BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy12044
(767 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3ZYJ|A Chain A, Netring1 In Complex With Ngl1
pdb|3ZYJ|C Chain C, Netring1 In Complex With Ngl1
Length = 440
Score = 112 bits (281), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 101/409 (24%), Positives = 163/409 (39%), Gaps = 84/409 (20%)
Query: 18 CPTSCICKWKGGKQTVECVNKSLITVVEGMDPNTQVLDYTGNNLKTLHNEKFQKM----- 72
CP+ C C + K V CV K+L V +G+ NT++L+ N ++ + F+ +
Sbjct: 35 CPSVCSCSNQFSK--VICVRKNLREVPDGISTNTRLLNLHENQIQIIKVNSFKHLRHLEI 92
Query: 73 -----------------GLVNLQKIYLSRCRISVIDSKAFRGLTNLVDLDFSHNVLQTVP 115
GL NL + L R++ I + AF L+ L +L +N ++++P
Sbjct: 93 LQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIP 152
Query: 116 SDTFPDYPSLMKLTL--------------------------------------------- 130
S F PSL +L L
Sbjct: 153 SYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIPNLTPLIKLDEL 212
Query: 131 --SGNPIKQIKTGAFQPLSYLVTLELSKCGIEVIEDAAFVGLDSLEWLKLDNNKITTISG 188
SGN + I+ G+FQ L +L L + + I+VIE AF L SL + L +N +T +
Sbjct: 213 DLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPH 272
Query: 189 SNILPT-GLHGIDLHHNPWTCDCLLIGLRRWLESTK-TPMAIDPICSVPPRLSSVTIKQL 246
P L I LHHNPW C+C ++ L W++ + A C+ PP L I +L
Sbjct: 273 DLFTPLHHLERIHLHHNPWNCNCDILWLSWWIKDMAPSNTACCARCNTPPNLKGRYIGEL 332
Query: 247 SIDELAC-EPQITPSTFYLEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASES 305
+ C P I L + EG L C+ S ++W+ + +
Sbjct: 333 DQNYFTCYAPVIVEPPADLNVTEGMAAELKCRAST-SLTSVSWITPNGTVM--------T 383
Query: 306 HAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCVAENQAGSTSSNYTIRI 354
H Y + L N + D G + C+ N G+T+++ T+ +
Sbjct: 384 HGAYKVRIAV-LSDGTLNFTNVTVQDTGMYTCMVSNSVGNTTASATLNV 431
>pdb|3ZYI|A Chain A, Netring2 In Complex With Ngl2
Length = 452
Score = 106 bits (264), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 100/409 (24%), Positives = 163/409 (39%), Gaps = 85/409 (20%)
Query: 18 CPTSCICKWKGGKQTVECVNKSLITVVEGMDPNTQVLDYTGNNLKTLHNEKFQKM----- 72
CP+ C C + K V C + L V +G+ NT+ L+ NN++ + + F+ +
Sbjct: 46 CPSVCSCSNQFSK--VVCTRRGLSEVPQGIPSNTRYLNLMENNIQMIQADTFRHLHHLEV 103
Query: 73 -----------------GLVNLQKIYLSRCRISVIDSKAFRGLTNLVDLDFSHNVLQTVP 115
GL +L + L ++VI S AF L+ L +L +N ++++P
Sbjct: 104 LQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIP 163
Query: 116 SDTFPDYPSLMKLTL--------------------------------------------- 130
S F PSLM+L L
Sbjct: 164 SYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMPNLTPLVGLEEL 223
Query: 131 --SGNPIKQIKTGAFQPLSYLVTLELSKCGIEVIEDAAFVGLDSLEWLKLDNNKITTISG 188
SGN +I+ G+F LS L L + + +IE AF GL SL L L +N ++++
Sbjct: 224 EMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPH 283
Query: 189 SNILPTG-LHGIDLHHNPWTCDCLLIGLRRWL-ESTKTPMAIDPICSVPPRLSSVTIKQL 246
P L + LHHNPW CDC ++ L WL E T C P + + ++
Sbjct: 284 DLFTPLRYLVELHLHHNPWNCDCDILWLAWWLREYIPTNSTCCGRCHAPMHMRGRYLVEV 343
Query: 247 SIDELACE-PQITPSTFYLEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASES 305
C P I + L I EG+ L C+ P + + WL + +S +
Sbjct: 344 DQASFQCSAPFIMDAPRDLNISEGRMAELKCRTP--PMSSVKWLLPNGTV----LSHASR 397
Query: 306 HAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCVAENQAGSTSSNYTIRI 354
H S + S +L + D G + C+ N AG+++++ + +
Sbjct: 398 HPRISVLNDGTLNFSHVL-----LSDTGVYTCMVTNVAGNSNASAYLNV 441
>pdb|3ZYO|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
And Immunoglobulin Domain Of Netrin-G Ligand-3
Length = 411
Score = 100 bits (249), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 95/414 (22%), Positives = 159/414 (38%), Gaps = 84/414 (20%)
Query: 16 SACPTSCICKWKGGKQTVECVNKSLITVVEGMDPNTQVLDYTGNNLKTLHNEKFQKM--- 72
++CP +C C + + V C + L V + NT+ L+ N+++ + + F+ +
Sbjct: 4 TSCPAACSCSNQASR--VICTRRELAEVPASIPVNTRYLNLQENSIQVIRTDTFKHLRHL 61
Query: 73 -------------------GLVNLQKIYLSRCRISVIDSKAFRGLTNLVDLDFSHNVLQT 113
GL +L + L R++ + ++AF L+ L +L +N +++
Sbjct: 62 EILQLSKNLVRKIEVGAFNGLPSLNTLELFDNRLTTVPTQAFEYLSKLRELWLRNNPIES 121
Query: 114 VPSDTFPDYPSLMKL--------------------------------------------- 128
+PS F PSL +L
Sbjct: 122 IPSYAFNRVPSLRRLDLGELKRLEYISEAAFEGLVNLRYLNLGMCNLKDIPNLTALVRLE 181
Query: 129 --TLSGNPIKQIKTGAFQPLSYLVTLELSKCGIEVIEDAAFVGLDSLEWLKLDNNKITTI 186
LSGN + I+ G+FQ L+ L L L + IE AF L SLE L L +N + ++
Sbjct: 182 ELELSGNRLDLIRPGSFQGLTSLRKLWLMHAQVATIERNAFDDLKSLEELNLSHNNLMSL 241
Query: 187 SGSNILPT-GLHGIDLHHNPWTCDCLLIGLRRWL-ESTKTPMAIDPICSVPPRLSSVTIK 244
P L + L+HNPW C+C ++ L WL E+ + C P L I
Sbjct: 242 PHDLFTPLHRLERVHLNHNPWHCNCDVLWLSWWLKETVPSNTTCCARCHAPAGLKGRYIG 301
Query: 245 QLSIDELAC-EPQITPSTFYLEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSAS 303
+L C P I L + EG L C+ + + WL +
Sbjct: 302 ELDQSHFTCYAPVIVEPPTDLNVTEGMAAELKCR-TGTSMTSVNWLTPNGTLM------- 353
Query: 304 ESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCVAENQAGSTSSNYTIRIVLK 357
+H Y + L N + D G + C+ N AG+T+++ T+ + K
Sbjct: 354 -THGSYRVRISV-LHDGTLNFTNVTVQDTGQYTCMVTNSAGNTTASATLNVGTK 405
>pdb|1OZN|A Chain A, 1.5a Crystal Structure Of The Nogo Receptor Ligand Binding
Domain Reveals A Convergent Recognition Scaffold
Mediating Inhibition Of Myelination
Length = 285
Score = 91.3 bits (225), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 64/200 (32%), Positives = 96/200 (48%), Gaps = 5/200 (2%)
Query: 54 LDYTGN-NLKTLHNEKFQKMGLVNLQKIYLSRCRISVIDSKAFRGLTNLVDLDFSHNVLQ 112
LD + N L+++ F +G L ++L RC + + FRGL L L N LQ
Sbjct: 85 LDLSDNAQLRSVDPATFHGLG--RLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQ 142
Query: 113 TVPSDTFPDYPSLMKLTLSGNPIKQIKTGAFQPLSYLVTLELSKCGIEVIEDAAFVGLDS 172
+P DTF D +L L L GN I + AF+ L L L L + + + AF L
Sbjct: 143 ALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGR 202
Query: 173 LEWLKLDNNKITTISGSNILP-TGLHGIDLHHNPWTCDCLLIGLRRWLESTKTPMAIDPI 231
L L L N ++ + + P L + L+ NPW CDC L WL+ + + P
Sbjct: 203 LMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRARPLWAWLQKFRGSSSEVP- 261
Query: 232 CSVPPRLSSVTIKQLSIDEL 251
CS+P RL+ +K+L+ ++L
Sbjct: 262 CSLPQRLAGRDLKRLAANDL 281
Score = 63.2 bits (152), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 45/170 (26%), Positives = 72/170 (42%), Gaps = 28/170 (16%)
Query: 18 CPTSCICKWKGGKQTVECVNKSLITVVEGMDPNTQVLDYTGNNLKTLHNEKFQKMGLVNL 77
CP +C+C + K T C + L V G+ +Q
Sbjct: 2 CPGACVC-YNEPKVTTSCPQQGLQAVPVGIPAASQ------------------------- 35
Query: 78 QKIYLSRCRISVIDSKAFRGLTNLVDLDFSHNVLQTVPSDTFPDYPSLMKLTLSGNP-IK 136
+I+L RIS + + +FR NL L NVL + + F L +L LS N ++
Sbjct: 36 -RIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLR 94
Query: 137 QIKTGAFQPLSYLVTLELSKCGIEVIEDAAFVGLDSLEWLKLDNNKITTI 186
+ F L L TL L +CG++ + F GL +L++L L +N + +
Sbjct: 95 SVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQAL 144
>pdb|1P8T|A Chain A, Crystal Structure Of Nogo-66 Receptor
Length = 285
Score = 91.3 bits (225), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 64/200 (32%), Positives = 96/200 (48%), Gaps = 5/200 (2%)
Query: 54 LDYTGN-NLKTLHNEKFQKMGLVNLQKIYLSRCRISVIDSKAFRGLTNLVDLDFSHNVLQ 112
LD + N L+++ F +G L ++L RC + + FRGL L L N LQ
Sbjct: 84 LDLSDNAQLRSVDPATFHGLG--RLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQ 141
Query: 113 TVPSDTFPDYPSLMKLTLSGNPIKQIKTGAFQPLSYLVTLELSKCGIEVIEDAAFVGLDS 172
+P DTF D +L L L GN I + AF+ L L L L + + + AF L
Sbjct: 142 ALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGR 201
Query: 173 LEWLKLDNNKITTISGSNILP-TGLHGIDLHHNPWTCDCLLIGLRRWLESTKTPMAIDPI 231
L L L N ++ + + P L + L+ NPW CDC L WL+ + + P
Sbjct: 202 LMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRARPLWAWLQKFRGSSSEVP- 260
Query: 232 CSVPPRLSSVTIKQLSIDEL 251
CS+P RL+ +K+L+ ++L
Sbjct: 261 CSLPQRLAGRDLKRLAANDL 280
Score = 62.8 bits (151), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 45/170 (26%), Positives = 72/170 (42%), Gaps = 28/170 (16%)
Query: 18 CPTSCICKWKGGKQTVECVNKSLITVVEGMDPNTQVLDYTGNNLKTLHNEKFQKMGLVNL 77
CP +C+C + K T C + L V G+ +Q
Sbjct: 1 CPGACVC-YNEPKVTTSCPQQGLQAVPVGIPAASQ------------------------- 34
Query: 78 QKIYLSRCRISVIDSKAFRGLTNLVDLDFSHNVLQTVPSDTFPDYPSLMKLTLSGNP-IK 136
+I+L RIS + + +FR NL L NVL + + F L +L LS N ++
Sbjct: 35 -RIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLR 93
Query: 137 QIKTGAFQPLSYLVTLELSKCGIEVIEDAAFVGLDSLEWLKLDNNKITTI 186
+ F L L TL L +CG++ + F GL +L++L L +N + +
Sbjct: 94 SVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQAL 143
>pdb|3KJ4|A Chain A, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
pdb|3KJ4|D Chain D, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
Length = 286
Score = 88.2 bits (217), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 73/282 (25%), Positives = 113/282 (40%), Gaps = 50/282 (17%)
Query: 18 CPTSCICKWKGGKQTVECVNKSLITVVEGMDPNTQVLDYTGNNLKTLHNEKFQKM----- 72
CP +C+C + K T C + L V G+ ++Q + GN + + FQ
Sbjct: 1 CPGACVC-YNEPKVTTSCPQQGLQAVPTGIPASSQRIFLHGNRISYVPAASFQSCRNLTI 59
Query: 73 ------------------------------------------GLVNLQKIYLSRCRISVI 90
GL +L ++L RC + +
Sbjct: 60 LWLHSNALAGIDAAAFTGLTLLEQLDLSDNAQLRVVDPTTFRGLGHLHTLHLDRCGLQEL 119
Query: 91 DSKAFRGLTNLVDLDFSHNVLQTVPSDTFPDYPSLMKLTLSGNPIKQIKTGAFQPLSYLV 150
FRGL L L N LQ +P +TF D +L L L GN I + AF+ L L
Sbjct: 120 GPGLFRGLAALQYLYLQDNNLQALPDNTFRDLGNLTHLFLHGNRIPSVPEHAFRGLHSLD 179
Query: 151 TLELSKCGIEVIEDAAFVGLDSLEWLKLDNNKITTISGSNILP-TGLHGIDLHHNPWTCD 209
L L + + + AF L L L L N ++ + ++P L + L+ NPW CD
Sbjct: 180 RLLLHQNHVARVHPHAFRDLGRLMTLYLFANNLSMLPAEVLVPLRSLQYLRLNDNPWVCD 239
Query: 210 CLLIGLRRWLESTKTPMAIDPICSVPPRLSSVTIKQLSIDEL 251
C L WL+ + + P C++P RL+ +K+L+ +L
Sbjct: 240 CRARPLWAWLQKFRGSSSEVP-CNLPQRLAGRDLKRLAASDL 280
>pdb|2XOT|A Chain A, Crystal Structure Of Neuronal Leucine Rich Repeat Protein
Amigo-1
pdb|2XOT|B Chain B, Crystal Structure Of Neuronal Leucine Rich Repeat Protein
Amigo-1
Length = 361
Score = 87.8 bits (216), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 96/361 (26%), Positives = 156/361 (43%), Gaps = 41/361 (11%)
Query: 15 VSACPTSCICKWKGGKQTVECVNKSLITVVEGMDPNTQVLDYTGNNLKTLHNEKFQKMGL 74
V +CP +C+C + C + L V + + T +LD + NNL L E + L
Sbjct: 9 VVSCPANCLC----ASNILSCSKQQLPNVPQSLPSYTALLDLSHNNLSRLRAE-WTPTRL 63
Query: 75 VNLQKIYLSRCRISVIDSKAFRGLTNLVDLDFSHNVLQTVPSDTFPDYPSLMKLTLSGNP 134
NL + LS ++ I S+AF + NL LD S N L T+ F D +L L L N
Sbjct: 64 TNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNH 123
Query: 135 IKQIKTGAFQPLS-----YLVTLELSKCGIEVIEDAAFVGLDSLEWLKLDNNKITTISGS 189
I + AF+ ++ YL ++S+ +E+I+D L L L L +NK+ + +
Sbjct: 124 IVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGN--KLPKLMLLDLSSNKLKKLPLT 181
Query: 190 NI--LPTGL-HGIDLHHNPWTCDCLLIGL-RRWLE---STKTPMAIDPICSVPPRLSSVT 242
++ LP + +G+ LH+NP CDC L L W S+ D C +L ++
Sbjct: 182 DLQKLPAWVKNGLYLHNNPLECDCKLYQLFSHWQYRQLSSVMDFQEDLYCMHSKKLHNI- 240
Query: 243 IKQLSIDELACEPQITPSTFYLEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSA 302
S+D C + S + E G +++ C K+ W V NE + +
Sbjct: 241 ---FSLDFFNCS-EYKESAW--EAHLGDTLTIRCDTKQQGMTKV-W----VSPSNEQVLS 289
Query: 303 SESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCVAENQAGSTSSNYTIRIVLKEENVE 362
S+ S G +L ++D G + C A + + N T+ + LK N
Sbjct: 290 QGSNGSVSVRNG------DLFFKKVQVEDGGVYTCYAMGE----TFNETLSVELKVYNFT 339
Query: 363 V 363
+
Sbjct: 340 L 340
>pdb|3M19|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
pdb|3M19|B Chain B, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
Length = 251
Score = 84.3 bits (207), Expect = 2e-16, Method: Composition-based stats.
Identities = 62/207 (29%), Positives = 98/207 (47%), Gaps = 4/207 (1%)
Query: 15 VSACPTSCICKWKGGKQTVECVNKSLITVVEGMDPNTQVLDYTGNNLKTLHNEKFQKMGL 74
+ C T C GK+ V+C KSL +V G+ +T+ LD L TL + F+ GL
Sbjct: 1 MKTCETVTGCTCNEGKKEVDCQGKSLDSVPSGIPADTEKLDLQSTGLATLSDATFR--GL 58
Query: 75 VNLQKIYLSRCRISVIDSKAFRGLTNLVDLDFSHNVLQTVPSDTFPDYPSLMKLTLSGNP 134
L + L ++ + + F LT L L ++N L ++P F L KL L GN
Sbjct: 59 TKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQ 118
Query: 135 IKQIKTGAFQPLSYLVTLELSKCGIEVIEDAAFVGLDSLEWLKLDNNKITTISGSNILPT 194
+K + +G F L+ L L L+ ++ I AF L +L+ L L N++ ++
Sbjct: 119 LKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRL 178
Query: 195 G-LHGIDLHHNPWTCD-CLLIGLRRWL 219
G L I L N + C C ++ L +W+
Sbjct: 179 GKLQTITLFGNQFDCSRCEILYLSQWI 205
>pdb|3M18|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R2.1 In Complex With Hen Egg Lysozyme
Length = 251
Score = 83.2 bits (204), Expect = 5e-16, Method: Composition-based stats.
Identities = 62/207 (29%), Positives = 97/207 (46%), Gaps = 4/207 (1%)
Query: 15 VSACPTSCICKWKGGKQTVECVNKSLITVVEGMDPNTQVLDYTGNNLKTLHNEKFQKMGL 74
+ C T C GK+ V+C KSL +V G+ +T+ LD L TL + F+ GL
Sbjct: 1 MKTCETVTGCTCNEGKKEVDCQGKSLDSVPSGIPADTEKLDLQSTGLATLSDATFR--GL 58
Query: 75 VNLQKIYLSRCRISVIDSKAFRGLTNLVDLDFSHNVLQTVPSDTFPDYPSLMKLTLSGNP 134
L + L ++ + + F LT L L ++N L ++P F L KL L GN
Sbjct: 59 TKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQ 118
Query: 135 IKQIKTGAFQPLSYLVTLELSKCGIEVIEDAAFVGLDSLEWLKLDNNKITTISGSNILPT 194
+K + +G F L+ L L L+ ++ I AF L +L+ L L N++ ++
Sbjct: 119 LKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRL 178
Query: 195 G-LHGIDLHHNPWTCD-CLLIGLRRWL 219
G L I L N + C C + L +W+
Sbjct: 179 GKLQTITLFGNQFDCSRCETLYLSQWI 205
>pdb|2ID5|A Chain A, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|B Chain B, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|C Chain C, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|D Chain D, Crystal Structure Of The Lingo-1 Ectodomain
Length = 477
Score = 82.4 bits (202), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 58/184 (31%), Positives = 92/184 (50%), Gaps = 6/184 (3%)
Query: 16 SACPTSCICKWKGGKQTVECVNKSLITVVEGMDPNTQVLDYTGNNLKTLHNEKFQKMGLV 75
+ CP C C + + V C K + V EG+ T++LD N +KTL+ ++F
Sbjct: 1 TGCPPRCECSAQ--DRAVLCHRKRFVAVPEGIPTETRLLDLGKNRIKTLNQDEFASFP-- 56
Query: 76 NLQKIYLSRCRISVIDSKAFRGLTNLVDLDFSHNVLQTVPSDTFPDYPSLMKLTLSGNPI 135
+L+++ L+ +S ++ AF L NL L N L+ +P F +L KL +S N I
Sbjct: 57 HLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKI 116
Query: 136 KQIKTGAFQPLSYLVTLELSKCGIEVIEDAAFVGLDSLEWLKLDNNKITTISGSNILPTG 195
+ FQ L L +LE+ + I AF GL+SLE L L+ +T+I + +
Sbjct: 117 VILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEAL--SH 174
Query: 196 LHGI 199
LHG+
Sbjct: 175 LHGL 178
Score = 72.8 bits (177), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 64/291 (21%), Positives = 112/291 (38%), Gaps = 64/291 (21%)
Query: 75 VNLQKIYLSRCRISVIDSKAFRGLTNLVDLDFSHNVLQTVPSDTFPDYPSLMKLTLSGNP 134
+NL + ++ C ++ + A R L L L+ S+N + T+ + L ++ L G
Sbjct: 224 LNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQ 283
Query: 135 IKQIKTGAFQPLSYLVTLELSKCGIEVIEDAAFVGLDSLEWLKLDNNKITTISGSNILPT 194
+ ++ AF+ L+YL L +S + +E++ F + +LE L LD+
Sbjct: 284 LAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDS-------------- 329
Query: 195 GLHGIDLHHNPWTCDCLLIGL--RRWLESTKTPMAIDPICSVPPRLSSVTIKQLSIDELA 252
NP CDC L+ + RRW + P C+ P + K
Sbjct: 330 ---------NPLACDCRLLWVFRRRWRLNFNRQ---QPTCATPEFVQGKEFKDF------ 371
Query: 253 CEPQITPSTFY--------------LEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNE 298
P + ++ + + EG V +C+ P I WL
Sbjct: 372 --PDVLLPNYFTCRRARIRDRKAQQVFVDEGHTVQFVCRADGDPPPAILWL--------- 420
Query: 299 SMSASESHAVYSTEEG--TEIKKSELLIYNSNIDDNGTFVCVAENQAGSTS 347
+ H V + G T L + + + DNGT++C+A N G+ S
Sbjct: 421 ---SPRKHLVSAKSNGRLTVFPDGTLEVRYAQVQDNGTYLCIAANAGGNDS 468
Score = 38.1 bits (87), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 34/62 (54%)
Query: 74 LVNLQKIYLSRCRISVIDSKAFRGLTNLVDLDFSHNVLQTVPSDTFPDYPSLMKLTLSGN 133
L+ LQ+I L +++V++ AFRGL L L+ S N L T+ F +L L L N
Sbjct: 271 LLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSN 330
Query: 134 PI 135
P+
Sbjct: 331 PL 332
>pdb|3ZYN|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
pdb|3ZYN|B Chain B, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
Length = 321
Score = 82.4 bits (202), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 73/309 (23%), Positives = 121/309 (39%), Gaps = 73/309 (23%)
Query: 16 SACPTSCICKWKGGKQTVECVNKSLITVVEGMDPNTQVLDYTGNNLKTLHNEKFQKM--- 72
++CP +C C + + V C + L V + NT+ L+ N+++ + + F+ +
Sbjct: 4 TSCPAACSCSNQASR--VICTRRELAEVPASIPVNTRYLNLQENSIQVIRTDTFKHLRHL 61
Query: 73 -------------------GLVNLQKIYLSRCRISVIDSKAFRGLTNLVDLDFSHNVLQT 113
GL +L + L R++ + ++AF L+ L +L +N +++
Sbjct: 62 EILQLSKNLVRKIEVGAFNGLPSLNTLELFDNRLTTVPTQAFEYLSKLRELWLRNNPIES 121
Query: 114 VPSDTFPDYPSLMKL--------------------------------------------- 128
+PS F PSL +L
Sbjct: 122 IPSYAFNRVPSLRRLDLGELKRLEYISEAAFEGLVNLRYLNLGMCNLKDIPNLTALVRLE 181
Query: 129 --TLSGNPIKQIKTGAFQPLSYLVTLELSKCGIEVIEDAAFVGLDSLEWLKLDNNKITTI 186
LSGN + I+ G+FQ L+ L L L + IE AF L SLE L L +N + ++
Sbjct: 182 ELELSGNRLDLIRPGSFQGLTSLRKLWLMHAQVATIERNAFDDLKSLEELNLSHNNLMSL 241
Query: 187 SGSNILPT-GLHGIDLHHNPWTCDCLLIGLRRWL-ESTKTPMAIDPICSVPPRLSSVTIK 244
P L + L+HNPW C+C ++ L WL E+ + C P L I
Sbjct: 242 PHDLFTPLHRLERVHLNHNPWHCNCDVLWLSWWLKETVPSNTTCCARCHAPAGLKGRYIG 301
Query: 245 QLSIDELAC 253
+L C
Sbjct: 302 ELDQSHFTC 310
>pdb|2O6S|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
pdb|2O6S|B Chain B, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
Length = 208
Score = 81.6 bits (200), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 57/193 (29%), Positives = 89/193 (46%), Gaps = 29/193 (15%)
Query: 18 CPTSCICKWKGGKQTVECVNKSLITVVEGMDPNTQVLDYTGNNLKTLHNEKFQKMGLVNL 77
CP+ C C TVEC ++ +V G+ T LD N+LK+L N F + L +L
Sbjct: 1 CPSRCSCS----GTTVECYSQGRTSVPTGIPAQTTYLDLETNSLKSLPNGVFDE--LTSL 54
Query: 78 QKIYLSRCRISVIDSKAFRGLTNLVDLDFSHNVLQTVPSDTFPDYPSLMKLTLSGNPIKQ 137
++YL ++ + + F LT+L L+ S N LQ++P+ F L +L L+ N ++
Sbjct: 55 TQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQS 114
Query: 138 IKTGAFQPLSYLVTLELSKCGIEVIEDAAFVGLDSLEWLKLDNNKITTISGSNILPTGLH 197
+ G F L+ L L L + ++ + D F L SL++
Sbjct: 115 LPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQY---------------------- 152
Query: 198 GIDLHHNPWTCDC 210
I LH NPW C C
Sbjct: 153 -IWLHDNPWDCTC 164
>pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors A29
Length = 270
Score = 80.5 bits (197), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 56/222 (25%), Positives = 100/222 (45%), Gaps = 24/222 (10%)
Query: 23 ICKWKGGKQTVECVNKSLITVVEGMDPNTQVLDYTGNNLKTLHNEKFQKMG--------- 73
+C K +V+C +K L + + +T+ LD N L +L ++ F ++
Sbjct: 11 VCSCNNNKNSVDCSSKKLTAIPSNIPADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLND 70
Query: 74 -------------LVNLQKIYLSRCRISVIDSKAFRGLTNLVDLDFSHNVLQTVPSDTFP 120
L NL+ ++++ ++ + F L NL +L N L+++P F
Sbjct: 71 NKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFD 130
Query: 121 DYPSLMKLTLSGNPIKQIKTGAFQPLSYLVTLELSKCGIEVIEDAAFVGLDSLEWLKLDN 180
L L+L N ++ + G F L+ L L L ++ + + AF L L+ LKLDN
Sbjct: 131 SLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDN 190
Query: 181 NKITTI-SGSNILPTGLHGIDLHHNPWTCDC-LLIGLRRWLE 220
N++ + G+ L + L NPW C C +I + +WL+
Sbjct: 191 NQLKRVPEGAFDSLEKLKMLQLQENPWDCTCNGIIYMAKWLK 232
>pdb|2V70|A Chain A, Third Lrr Domain Of Human Slit2
pdb|2V70|B Chain B, Third Lrr Domain Of Human Slit2
pdb|2V70|C Chain C, Third Lrr Domain Of Human Slit2
pdb|2V70|D Chain D, Third Lrr Domain Of Human Slit2
Length = 220
Score = 76.6 bits (187), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 59/239 (24%), Positives = 102/239 (42%), Gaps = 31/239 (12%)
Query: 17 ACPTSCICKWKGGKQTVECVNKSLITVVEGMDPNTQVLDYTGNNLKTLHNEKFQKMGLVN 76
ACP C C+ TV+C N+ L + E + T L N L
Sbjct: 4 ACPEKCRCE----GTTVDCSNQKLNKIPEHIPQYTAELRLNNNEFTVLE----------- 48
Query: 77 LQKIYLSRCRISVIDSKAFRGLTNLVDLDFSHNVLQTVPSDTFPDYPSLMKLTLSGNPIK 136
+ F+ L L ++FS+N + + F + ++ L+ N ++
Sbjct: 49 --------------ATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLE 94
Query: 137 QIKTGAFQPLSYLVTLELSKCGIEVIEDAAFVGLDSLEWLKLDNNKITTIS-GSNILPTG 195
++ F+ L L TL L I + + +F+GL S+ L L +N+ITT++ G+
Sbjct: 95 NVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHS 154
Query: 196 LHGIDLHHNPWTCDCLLIGLRRWLESTKTPMAIDPICSVPPRLSSVTIKQLSIDELACE 254
L ++L NP+ C+C L L WL + +P C P L + I+ ++I + C+
Sbjct: 155 LSTLNLLANPFNCNCYLAWLGEWLRKKRIVTG-NPRCQKPYFLKEIPIQDVAIQDFTCD 212
>pdb|3V47|A Chain A, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
pdb|3V47|B Chain B, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
Length = 455
Score = 73.6 bits (179), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 52/162 (32%), Positives = 78/162 (48%), Gaps = 2/162 (1%)
Query: 60 NLKTLHNEKFQKMGLVNLQKIYLSRCRISVIDSKAFRGLTNLVDLDFSHNVLQTVPSDTF 119
N K N F+ + ++ LS+ +I + F T+L L + N + + + F
Sbjct: 260 NFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAF 319
Query: 120 PDYPSLMKLTLSGNPIKQIKTGAFQPLSYLVTLELSKCGIEVIEDAAFVGLDSLEWLKLD 179
L+KL LS N + I + F+ L L L+LS I + D +F+GL +L+ L LD
Sbjct: 320 WGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALD 379
Query: 180 NNKITTI-SGSNILPTGLHGIDLHHNPWTCDCLLIG-LRRWL 219
N++ ++ G T L I LH NPW C C I L RWL
Sbjct: 380 TNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSRWL 421
Score = 44.3 bits (103), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 39/121 (32%), Positives = 56/121 (46%), Gaps = 8/121 (6%)
Query: 98 LTNLVDLDFSHNVLQT----VPSDTFPDYPSLMKLTLSGNPIKQIKTGAFQPLSYLVTLE 153
+ L DL F QT + ++TF SL+ L L N Q++TGAF L+ L L
Sbjct: 50 FSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLT 109
Query: 154 LSKCGIE--VIEDAAFVGLDSLEWLKLDNNKITTISGSNILPT--GLHGIDLHHNPWTCD 209
L++C ++ V+ F L SLE L L +N I I ++ H +DL N
Sbjct: 110 LTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSI 169
Query: 210 C 210
C
Sbjct: 170 C 170
>pdb|2FT3|A Chain A, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|B Chain B, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|C Chain C, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|D Chain D, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|E Chain E, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|F Chain F, Crystal Structure Of The Biglycan Dimer Core Protein
Length = 332
Score = 72.4 bits (176), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 60/192 (31%), Positives = 93/192 (48%), Gaps = 16/192 (8%)
Query: 16 SACPTSCICKWKGGKQTVECVNKSLITVVEGMDPNTQVLDYTGNNLKTLHNEKFQKMGLV 75
+ CP C C + V+C + L V + + P+T +LD N++ L + F+ GL
Sbjct: 25 AMCPFGCHCHLR----VVQCSDLGLKAVPKEISPDTTLLDLQNNDISELRKDDFK--GLQ 78
Query: 76 NLQKIYLSRCRISVIDSKAFRGLTNLVDLDFSHNVLQTVPSDTFPDYP-SLMKLTLSGNP 134
+L + L +IS I KAF L L L S N L +P P+ P SL++L + N
Sbjct: 79 HLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLVEIP----PNLPSSLVELRIHDNR 134
Query: 135 IKQIKTGAFQPLSYLVTLELSKCGIE--VIEDAAFVGLDSLEWLKLDNNKITTISGSNIL 192
I+++ G F L + +E+ +E E AF GL L +L++ K+T I L
Sbjct: 135 IRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTGIPKD--L 191
Query: 193 PTGLHGIDLHHN 204
P L+ + L HN
Sbjct: 192 PETLNELHLDHN 203
>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
pdb|3RFS|B Chain B, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 272
Score = 72.4 bits (176), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 50/161 (31%), Positives = 74/161 (45%), Gaps = 25/161 (15%)
Query: 50 NTQVLDYTGNNLKTLHNEKFQKMGLVNLQKIYLSRCRISVIDSKAFRGLTNLVDLDFSHN 109
N L TGN L++L N F K L NL+++ L ++ + F LTNL L+ +HN
Sbjct: 86 NLTYLILTGNQLQSLPNGVFDK--LTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHN 143
Query: 110 VLQTVPSDTFPDYPSLMKLTLSGNPIKQIKTGAFQPLSYLVTLELSKCGIEVIEDAAFVG 169
LQ++P F +L +L LS N ++ + G F L+ L L L + ++ + D F
Sbjct: 144 QLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDR 203
Query: 170 LDSLEWLKLDNNKITTISGSNILPTGLHGIDLHHNPWTCDC 210
L SL++ I LH NPW C C
Sbjct: 204 LTSLQY-----------------------IWLHDNPWDCTC 221
Score = 34.7 bits (78), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 32/118 (27%), Positives = 57/118 (48%), Gaps = 6/118 (5%)
Query: 91 DSKAFRG---LTNLVDLDFSHNVLQTVPSDTFPDYPSLMKLTLSGNPIKQIKTGAFQPLS 147
D K+ +G L N+ L N L + + + +L L L+GN ++ + G F L+
Sbjct: 52 DIKSVQGIQYLPNVRYLALGGNKLHDISA--LKELTNLTYLILTGNQLQSLPNGVFDKLT 109
Query: 148 YLVTLELSKCGIEVIEDAAFVGLDSLEWLKLDNNKITTI-SGSNILPTGLHGIDLHHN 204
L L L + ++ + D F L +L +L L +N++ ++ G T L +DL +N
Sbjct: 110 NLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYN 167
>pdb|1XKU|A Chain A, Crystal Structure Of The Dimeric Protein Core Of Decorin,
The Archetypal Small Leucine-Rich Repeat Proteoglycan
Length = 330
Score = 68.6 bits (166), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 55/193 (28%), Positives = 91/193 (47%), Gaps = 13/193 (6%)
Query: 17 ACPTSCICKWKGGKQTVECVNKSLITVVEGMDPNTQVLDYTGNNLKTLHNEKFQKMGLVN 76
CP C C + V+C + L V + + P+T +LD N + + + F+ L N
Sbjct: 24 VCPFRCQCHLR----VVQCSDLGLEKVPKDLPPDTALLDLQNNKITEIKDGDFKN--LKN 77
Query: 77 LQKIYLSRCRISVIDSKAFRGLTNLVDLDFSHNVLQTVPSDTFPDYPSLMKLTLSGNPIK 136
L + L +IS I AF L L L S N L+ +P + P +L +L + N I
Sbjct: 78 LHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELP-EKMPK--TLQELRVHENEIT 134
Query: 137 QIKTGAFQPLSYLVTLELSKCGIEV--IEDAAFVGLDSLEWLKLDNNKITTISGSNILPT 194
+++ F L+ ++ +EL ++ IE+ AF G+ L ++++ + ITTI LP
Sbjct: 135 KVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQG--LPP 192
Query: 195 GLHGIDLHHNPWT 207
L + L N T
Sbjct: 193 SLTELHLDGNKIT 205
>pdb|1XCD|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 1
pdb|1XEC|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
pdb|1XEC|B Chain B, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
Length = 329
Score = 68.6 bits (166), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 55/193 (28%), Positives = 91/193 (47%), Gaps = 13/193 (6%)
Query: 17 ACPTSCICKWKGGKQTVECVNKSLITVVEGMDPNTQVLDYTGNNLKTLHNEKFQKMGLVN 76
CP C C + V+C + L V + + P+T +LD N + + + F+ L N
Sbjct: 24 VCPFRCQCHLR----VVQCSDLGLEKVPKDLPPDTALLDLQNNKITEIKDGDFKN--LKN 77
Query: 77 LQKIYLSRCRISVIDSKAFRGLTNLVDLDFSHNVLQTVPSDTFPDYPSLMKLTLSGNPIK 136
L + L +IS I AF L L L S N L+ +P + P +L +L + N I
Sbjct: 78 LHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELP-EKMPK--TLQELRVHENEIT 134
Query: 137 QIKTGAFQPLSYLVTLELSKCGIEV--IEDAAFVGLDSLEWLKLDNNKITTISGSNILPT 194
+++ F L+ ++ +EL ++ IE+ AF G+ L ++++ + ITTI LP
Sbjct: 135 KVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQG--LPP 192
Query: 195 GLHGIDLHHNPWT 207
L + L N T
Sbjct: 193 SLTELHLDGNKIT 205
>pdb|3E6J|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor (Vlr)
Rbc36 In Complex With H-Trisaccharide
Length = 229
Score = 68.2 bits (165), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 57/205 (27%), Positives = 88/205 (42%), Gaps = 31/205 (15%)
Query: 16 SACPTSCICKWKGGKQTVECVNKSLITVVEGMDPNTQVLDYTGNNLKTLHNEKFQKMGLV 75
+ACP+ C C TV+C +K +V G+ N Q+L N + L F L+
Sbjct: 11 AACPSQCSCS----GTTVDCRSKRHASVPAGIPTNAQILYLHDNQITKLEPGVFDS--LI 64
Query: 76 NLQKIYLSRCRISVIDSKAFRGLTNLVDLDFSHNVLQTVPSDTFPDYPSLMKLTLSGNPI 135
NL+++YL ++ + F LT L LD N L +PS F L +L + N +
Sbjct: 65 NLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKL 124
Query: 136 KQIKTGAFQPLSYLVTLELSKCGIEVIEDAAFVGLDSLEWLKLDNNKITTISGSNILPTG 195
++ G + L++L L L + ++ I AF L SL
Sbjct: 125 TELPRG-IERLTHLTHLALDQNQLKSIPHGAFDRLSSLT--------------------- 162
Query: 196 LHGIDLHHNPWTCDCL-LIGLRRWL 219
H L NPW C+C ++ LR W+
Sbjct: 163 -HAY-LFGNPWDCECRDIMYLRNWV 185
>pdb|1GWB|B Chain B, Structure Of Glycoprotein 1b
pdb|1GWB|A Chain A, Structure Of Glycoprotein 1b
Length = 281
Score = 66.2 bits (160), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 59/215 (27%), Positives = 89/215 (41%), Gaps = 35/215 (16%)
Query: 33 VECVNKSLITVVEGMDPNTQVLDYTGNNLKTLHNEKFQKMGLVNLQKIYLSRCRISVIDS 92
V C ++L + + +T +L + N L T M L ++ L RC ++ +
Sbjct: 16 VNCDKRNLTALPPDLPKDTTILHLSENLLYTFSLATL--MPYTRLTQLNLDRCELTKLQV 73
Query: 93 KAFRGLTNLVDLDFSHNVLQTVP--SDTFP---------------------DYPSLMKLT 129
L L LD SHN LQ++P T P L +L
Sbjct: 74 DG--TLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELY 131
Query: 130 LSGNPIKQIKTGAFQPLSYLVTLELSKCGIEVIEDAAFVGLDSLEWLKLDNNKITTIS-- 187
L GN +K + G P L L L+ + + GL++L+ L L N + TI
Sbjct: 132 LKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKG 191
Query: 188 --GSNILPTGLHGIDLHHNPWTCDCLLIGLRRWLE 220
GS++LP LH NPW C+C ++ RRWL+
Sbjct: 192 FFGSHLLPFAF----LHGNPWLCNCEILYFRRWLQ 222
>pdb|3RFJ|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 279
Score = 66.2 bits (160), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 51/171 (29%), Positives = 75/171 (43%), Gaps = 26/171 (15%)
Query: 50 NTQVLDYTGNNLKTLHNEKFQKMGLVNLQKIYLSRCRISVIDSKAFRGLTNLVDLDFSHN 109
N L TGN L++L N F K L NL+++ L ++ + F LTNL L HN
Sbjct: 86 NLTYLILTGNQLQSLPNGVFDK--LTNLKELVLVENQLQSLPDGVFDKLTNLTYLYLYHN 143
Query: 110 VLQTVPSDTFPDYPSLMKLTLSGNPIKQIKTGAFQPLSYLVTLELSKCGIEVIEDAAFVG 169
LQ++P F +L +L L N ++ + G F L+ L L L+ ++ + D F
Sbjct: 144 QLQSLPKGVFDKLTNLTRLDLDNNQLQSLPEGVFDKLTQLKQLSLNDNQLKSVPDGVFDR 203
Query: 170 LDSLEWLKLDNNKITTISGSNILPTGLHGIDLHHNPWTCDCL-LIGLRRWL 219
L T L I L +NPW C C ++ L RW+
Sbjct: 204 L-----------------------TSLTHIWLLNNPWDCACSDILYLSRWI 231
>pdb|1SQ0|B Chain B, Crystal Structure Of The Complex Of The Wild-Type Von
Willebrand Factor A1 Domain And Glycoprotein Ib Alpha At
2.6 Angstrom Resolution
Length = 288
Score = 66.2 bits (160), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 59/215 (27%), Positives = 88/215 (40%), Gaps = 35/215 (16%)
Query: 33 VECVNKSLITVVEGMDPNTQVLDYTGNNLKTLHNEKFQKMGLVNLQKIYLSRCRISVIDS 92
V C + L + + +T +L + N L T M L ++ L RC ++ +
Sbjct: 15 VNCDKRDLTALPPDLPKDTTILHLSENLLYTFSLATL--MPYTRLTQLNLDRCELTKLQV 72
Query: 93 KAFRGLTNLVDLDFSHNVLQTVP--SDTFP---------------------DYPSLMKLT 129
L L LD SHN LQ++P T P L +L
Sbjct: 73 DG--TLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELY 130
Query: 130 LSGNPIKQIKTGAFQPLSYLVTLELSKCGIEVIEDAAFVGLDSLEWLKLDNNKITTIS-- 187
L GN +K + G P L L L+ + + GL++L+ L L N + TI
Sbjct: 131 LKGNELKTLPPGLLTPTPKLEKLSLANNDLTELPAGLLNGLENLDTLLLQENSLYTIPKG 190
Query: 188 --GSNILPTGLHGIDLHHNPWTCDCLLIGLRRWLE 220
GS++LP LH NPW C+C ++ RRWL+
Sbjct: 191 FFGSHLLPFAF----LHGNPWLCNCEILYFRRWLQ 221
>pdb|1M0Z|A Chain A, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
pdb|1M0Z|B Chain B, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
Length = 290
Score = 65.9 bits (159), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 59/215 (27%), Positives = 88/215 (40%), Gaps = 35/215 (16%)
Query: 33 VECVNKSLITVVEGMDPNTQVLDYTGNNLKTLHNEKFQKMGLVNLQKIYLSRCRISVIDS 92
V C + L + + +T +L + N L T M L ++ L RC ++ +
Sbjct: 15 VNCDKRQLTALPPDLPKDTTILHLSENLLYTFSLATL--MPYTRLTQLNLDRCELTKLQV 72
Query: 93 KAFRGLTNLVDLDFSHNVLQTVP--SDTFP---------------------DYPSLMKLT 129
L L LD SHN LQ++P T P L +L
Sbjct: 73 DG--TLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELY 130
Query: 130 LSGNPIKQIKTGAFQPLSYLVTLELSKCGIEVIEDAAFVGLDSLEWLKLDNNKITTIS-- 187
L GN +K + G P L L L+ + + GL++L+ L L N + TI
Sbjct: 131 LKGNELKTLPPGLLTPTPKLEKLSLANNQLTELPAGLLNGLENLDTLLLQENSLYTIPKG 190
Query: 188 --GSNILPTGLHGIDLHHNPWTCDCLLIGLRRWLE 220
GS++LP LH NPW C+C ++ RRWL+
Sbjct: 191 FFGSHLLPFAF----LHGNPWLCNCEILYFRRWLQ 221
>pdb|1M10|B Chain B, Crystal Structure Of The Complex Of Glycoprotein Ib Alpha
And The Von Willebrand Factor A1 Domain
Length = 290
Score = 65.9 bits (159), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 59/215 (27%), Positives = 88/215 (40%), Gaps = 35/215 (16%)
Query: 33 VECVNKSLITVVEGMDPNTQVLDYTGNNLKTLHNEKFQKMGLVNLQKIYLSRCRISVIDS 92
V C + L + + +T +L + N L T M L ++ L RC ++ +
Sbjct: 15 VNCDKRQLTALPPDLPKDTTILHLSENLLYTFSLATL--MPYTRLTQLNLDRCELTKLQV 72
Query: 93 KAFRGLTNLVDLDFSHNVLQTVP--SDTFP---------------------DYPSLMKLT 129
L L LD SHN LQ++P T P L +L
Sbjct: 73 DG--TLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELY 130
Query: 130 LSGNPIKQIKTGAFQPLSYLVTLELSKCGIEVIEDAAFVGLDSLEWLKLDNNKITTIS-- 187
L GN +K + G P L L L+ + + GL++L+ L L N + TI
Sbjct: 131 LKGNELKTLPPGLLTPTPKLEKLSLANNQLTELPAGLLNGLENLDTLLLQENSLYTIPKG 190
Query: 188 --GSNILPTGLHGIDLHHNPWTCDCLLIGLRRWLE 220
GS++LP LH NPW C+C ++ RRWL+
Sbjct: 191 FFGSHLLPFAF----LHGNPWLCNCEILYFRRWLQ 221
>pdb|3P72|A Chain A, Structure Of Platelet Glycoprotein 1b Alpha With A Bound
Peptide Inhibitor
Length = 269
Score = 65.9 bits (159), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 59/215 (27%), Positives = 88/215 (40%), Gaps = 35/215 (16%)
Query: 33 VECVNKSLITVVEGMDPNTQVLDYTGNNLKTLHNEKFQKMGLVNLQKIYLSRCRISVIDS 92
V C + L + + +T +L + N L T M L ++ L RC ++ +
Sbjct: 15 VNCDKRQLTALPPDLPKDTTILHLSENLLYTFSLATL--MPYTRLTQLNLDRCELTKLQV 72
Query: 93 KAFRGLTNLVDLDFSHNVLQTVP--SDTFP---------------------DYPSLMKLT 129
L L LD SHN LQ++P T P L +L
Sbjct: 73 DG--TLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELY 130
Query: 130 LSGNPIKQIKTGAFQPLSYLVTLELSKCGIEVIEDAAFVGLDSLEWLKLDNNKITTIS-- 187
L GN +K + G P L L L+ + + GL++L+ L L N + TI
Sbjct: 131 LKGNELKTLPPGLLTPTPKLEKLSLANNQLTELPAGLLNGLENLDTLLLQENSLYTIPKG 190
Query: 188 --GSNILPTGLHGIDLHHNPWTCDCLLIGLRRWLE 220
GS++LP LH NPW C+C ++ RRWL+
Sbjct: 191 FFGSHLLPFAF----LHGNPWLCNCEILYFRRWLQ 221
>pdb|1P8V|A Chain A, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Alpha-thrombin At 2.6a
Length = 279
Score = 65.5 bits (158), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 59/215 (27%), Positives = 88/215 (40%), Gaps = 35/215 (16%)
Query: 33 VECVNKSLITVVEGMDPNTQVLDYTGNNLKTLHNEKFQKMGLVNLQKIYLSRCRISVIDS 92
V C + L + + +T +L + N L T M L ++ L RC ++ +
Sbjct: 15 VNCDKRDLTALPPDLPKDTTILHLSENLLYTFSLATL--MPYTRLTQLNLDRCELTKLQV 72
Query: 93 KAFRGLTNLVDLDFSHNVLQTVP--SDTFP---------------------DYPSLMKLT 129
L L LD SHN LQ++P T P L +L
Sbjct: 73 DG--TLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELY 130
Query: 130 LSGNPIKQIKTGAFQPLSYLVTLELSKCGIEVIEDAAFVGLDSLEWLKLDNNKITTIS-- 187
L GN +K + G P L L L+ + + GL++L+ L L N + TI
Sbjct: 131 LKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKG 190
Query: 188 --GSNILPTGLHGIDLHHNPWTCDCLLIGLRRWLE 220
GS++LP LH NPW C+C ++ RRWL+
Sbjct: 191 FFGSHLLPFAF----LHGNPWLCNCEILYFRRWLQ 221
>pdb|2O6R|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B61
Length = 177
Score = 65.5 bits (158), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 49/148 (33%), Positives = 71/148 (47%), Gaps = 11/148 (7%)
Query: 83 SRCRISVIDSKA-FRGLTNL--------VDLDFSHNVLQTVPSDTFPDYPSLMKLTLSGN 133
SRC S + + +GLT++ L+ N LQ++P F L KL+LS N
Sbjct: 3 SRCSCSGTEIRCNSKGLTSVPTGIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQN 62
Query: 134 PIKQIKTGAFQPLSYLVTLELSKCGIEVIEDAAFVGLDSLEWLKLDNNKITTI-SGSNIL 192
I+ + G F L+ L L L + ++ + + F L L+ L LD N++ ++ G
Sbjct: 63 QIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDR 122
Query: 193 PTGLHGIDLHHNPWTCDCLLIG-LRRWL 219
T L I LH NPW C C I L RWL
Sbjct: 123 LTSLQKIWLHTNPWDCSCPRIDYLSRWL 150
Score = 42.4 bits (98), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 35/139 (25%), Positives = 55/139 (39%), Gaps = 26/139 (18%)
Query: 18 CPTSCICKWKGGKQTVECVNKSLITVVEGMDPNTQVLDYTGNNLKTLHNEKFQKM----- 72
CP+ C C + C +K L +V G+ + L+ N L++L + F K+
Sbjct: 1 CPSRCSC----SGTEIRCNSKGLTSVPTGIPSSATRLELESNKLQSLPHGVFDKLTQLTK 56
Query: 73 -----------------GLVNLQKIYLSRCRISVIDSKAFRGLTNLVDLDFSHNVLQTVP 115
L L +YL ++ + + F LT L +L N L++VP
Sbjct: 57 LSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVP 116
Query: 116 SDTFPDYPSLMKLTLSGNP 134
F SL K+ L NP
Sbjct: 117 DGIFDRLTSLQKIWLHTNP 135
>pdb|1U0N|D Chain D, The Ternary Von Willebrand Factor A1-Glycoprotein Ibalpha-
Botrocetin Complex
Length = 265
Score = 65.5 bits (158), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 59/215 (27%), Positives = 88/215 (40%), Gaps = 35/215 (16%)
Query: 33 VECVNKSLITVVEGMDPNTQVLDYTGNNLKTLHNEKFQKMGLVNLQKIYLSRCRISVIDS 92
V C + L + + +T +L + N L T M L ++ L RC ++ +
Sbjct: 15 VNCDKRQLTALPPDLPKDTTILHLSENLLYTFSLATL--MPYTRLTQLNLDRCELTKLQV 72
Query: 93 KAFRGLTNLVDLDFSHNVLQTVP--SDTFP---------------------DYPSLMKLT 129
L L LD SHN LQ++P T P L +L
Sbjct: 73 DG--TLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELY 130
Query: 130 LSGNPIKQIKTGAFQPLSYLVTLELSKCGIEVIEDAAFVGLDSLEWLKLDNNKITTIS-- 187
L GN +K + G P L L L+ + + GL++L+ L L N + TI
Sbjct: 131 LKGNELKTLPPGLLTPTPKLEKLSLANNQLTELPAGLLNGLENLDTLLLQENSLYTIPKG 190
Query: 188 --GSNILPTGLHGIDLHHNPWTCDCLLIGLRRWLE 220
GS++LP LH NPW C+C ++ RRWL+
Sbjct: 191 FFGSHLLPFAF----LHGNPWLCNCEILYFRRWLQ 221
>pdb|1W8A|A Chain A, Third Lrr Domain Of Drosophila Slit
Length = 192
Score = 65.5 bits (158), Expect = 1e-10, Method: Composition-based stats.
Identities = 53/185 (28%), Positives = 84/185 (45%), Gaps = 12/185 (6%)
Query: 82 LSRCRISVIDSKAFRGLTNL--------VDLDFSHNVLQTVPSD-TFPDYPSLMKLTLSG 132
+ C + +D RGL + +L + N L + SD F P L+KL L
Sbjct: 5 MCHCEGTTVDCTG-RGLKEIPRDIPLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKR 63
Query: 133 NPIKQIKTGAFQPLSYLVTLELSKCGIEVIEDAAFVGLDSLEWLKLDNNKITTI-SGSNI 191
N + I+ AF+ S++ L+L + I+ I + F+GL L+ L L +N+I+ + GS
Sbjct: 64 NQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFE 123
Query: 192 LPTGLHGIDLHHNPWTCDCLLIGLRRWLESTKTPMAIDPICSVPPRLSSVTIKQLSIDEL 251
L ++L NP+ C+C L WL K+ C P ++ V IK L E
Sbjct: 124 HLNSLTSLNLASNPFNCNCHLAWFAEWLRK-KSLNGGAARCGAPSKVRDVQIKDLPHSEF 182
Query: 252 ACEPQ 256
C +
Sbjct: 183 KCSSE 187
>pdb|1P9A|G Chain G, Crystal Structure Of N-terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-alpha At 1.7 Angstrom
Resolution
pdb|1QYY|A Chain A, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
pdb|1QYY|G Chain G, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
Length = 290
Score = 64.3 bits (155), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 42/127 (33%), Positives = 60/127 (47%), Gaps = 8/127 (6%)
Query: 98 LTNLVDLDFSHNVLQTVPSDTFPDYPSLMKLTLSGNPIKQIKTGAFQPLSYLVTLELSKC 157
L L LD S N L ++P L +L L GN +K + G P L L L+
Sbjct: 99 LPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANN 158
Query: 158 GIEVIEDAAFVGLDSLEWLKLDNNKITTIS----GSNILPTGLHGIDLHHNPWTCDCLLI 213
+ + GL++L+ L L N + TI GS++LP LH NPW C+C ++
Sbjct: 159 NLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAF----LHGNPWLCNCEIL 214
Query: 214 GLRRWLE 220
RRWL+
Sbjct: 215 YFRRWLQ 221
>pdb|1OOK|G Chain G, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Human Alpha-thrombin
Length = 290
Score = 64.3 bits (155), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 42/127 (33%), Positives = 60/127 (47%), Gaps = 8/127 (6%)
Query: 98 LTNLVDLDFSHNVLQTVPSDTFPDYPSLMKLTLSGNPIKQIKTGAFQPLSYLVTLELSKC 157
L L LD S N L ++P L +L L GN +K + G P L L L+
Sbjct: 99 LPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANN 158
Query: 158 GIEVIEDAAFVGLDSLEWLKLDNNKITTIS----GSNILPTGLHGIDLHHNPWTCDCLLI 213
+ + GL++L+ L L N + TI GS++LP LH NPW C+C ++
Sbjct: 159 NLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAF----LHGNPWLCNCEIL 214
Query: 214 GLRRWLE 220
RRWL+
Sbjct: 215 YFRRWLQ 221
>pdb|2WFH|A Chain A, The Human Slit 2 Dimerization Domain D4
pdb|2WFH|B Chain B, The Human Slit 2 Dimerization Domain D4
Length = 193
Score = 64.3 bits (155), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 50/143 (34%), Positives = 67/143 (46%), Gaps = 15/143 (10%)
Query: 16 SACPTSCICKWKGGKQTVECVNKSLITVVEGMDPNTQVLDYTGNNL----KTLHNEKFQK 71
S CPT C C V C NK L + +G+ + L GN K L N K
Sbjct: 2 SRCPTECTCL----DTVVRCSNKGLKVLPKGIPRDVTELYLDGNQFTLVPKELSNYK--- 54
Query: 72 MGLVNLQKIYLSRCRISVIDSKAFRGLTNLVDLDFSHNVLQTVPSDTFPDYPSLMKLTLS 131
+L I LS RIS + +++F +T L+ L S+N L+ +P TF SL L+L
Sbjct: 55 ----HLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLH 110
Query: 132 GNPIKQIKTGAFQPLSYLVTLEL 154
GN I + GAF LS L L +
Sbjct: 111 GNDISVVPEGAFNDLSALSHLAI 133
Score = 45.8 bits (107), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 36/123 (29%), Positives = 57/123 (46%), Gaps = 2/123 (1%)
Query: 100 NLVDLDFSHNVLQTVPSDTFPDYPSLMKLTLSGNPIKQIKTGAFQPLSYLVTLELSKCGI 159
++ +L N VP + +Y L + LS N I + +F ++ L+TL LS +
Sbjct: 32 DVTELYLDGNQFTLVPKE-LSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRL 90
Query: 160 EVIEDAAFVGLDSLEWLKLDNNKITTI-SGSNILPTGLHGIDLHHNPWTCDCLLIGLRRW 218
I F GL SL L L N I+ + G+ + L + + NP CDC + L W
Sbjct: 91 RCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLYCDCNMQWLSDW 150
Query: 219 LES 221
++S
Sbjct: 151 VKS 153
>pdb|3PMH|G Chain G, Mechanism Of Sulfotyrosine-Mediated Glycoprotein Ib
Interaction With Two Distinct Alpha-Thrombin Sites
Length = 290
Score = 63.9 bits (154), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 42/127 (33%), Positives = 60/127 (47%), Gaps = 8/127 (6%)
Query: 98 LTNLVDLDFSHNVLQTVPSDTFPDYPSLMKLTLSGNPIKQIKTGAFQPLSYLVTLELSKC 157
L L LD S N L ++P L +L L GN +K + G P L L L+
Sbjct: 99 LPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANN 158
Query: 158 GIEVIEDAAFVGLDSLEWLKLDNNKITTIS----GSNILPTGLHGIDLHHNPWTCDCLLI 213
+ + GL++L+ L L N + TI GS++LP LH NPW C+C ++
Sbjct: 159 NLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAF----LHGNPWLCNCEIL 214
Query: 214 GLRRWLE 220
RRWL+
Sbjct: 215 YFRRWLQ 221
>pdb|2Z63|A Chain A, Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 570
Score = 63.5 bits (153), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 45/129 (34%), Positives = 63/129 (48%), Gaps = 3/129 (2%)
Query: 94 AFRGLTNLVDLDFSHNVLQTVPSDTFPDYPSLMKLTLSGNPIKQ-IKTGAFQPLSYLVTL 152
F L NL+ LD SH + + F SL L ++GN ++ F L L L
Sbjct: 416 VFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFL 475
Query: 153 ELSKCGIEVIEDAAFVGLDSLEWLKLDNNKITTI-SGSNILPTGLHGIDLHHNPWTCDCL 211
+LS+C +E + AF L SL+ L + +N++ ++ G T L I LH NPW C C
Sbjct: 476 DLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 535
Query: 212 LIG-LRRWL 219
I L RWL
Sbjct: 536 RIDYLSRWL 544
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 44/74 (59%)
Query: 103 DLDFSHNVLQTVPSDTFPDYPSLMKLTLSGNPIKQIKTGAFQPLSYLVTLELSKCGIEVI 162
+LD S N L+ + S +F +P L L LS I+ I+ GA+Q LS+L TL L+ I+ +
Sbjct: 32 NLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSL 91
Query: 163 EDAAFVGLDSLEWL 176
AF GL SL+ L
Sbjct: 92 ALGAFSGLSSLQKL 105
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 43/164 (26%), Positives = 78/164 (47%), Gaps = 9/164 (5%)
Query: 32 TVECVNKSLITVVEGMDPNTQVLDYTGNNLKTLHNEKFQKMGLVNLQKIYLSRCRISVID 91
T +C+ + + + + +T+ LD + N L+ L + F LQ + LSRC I I+
Sbjct: 11 TYQCMELNFYKIPDNLPFSTKNLDLSFNPLRHLGSYSF--FSFPELQVLDLSRCEIQTIE 68
Query: 92 SKAFRGLTNLVDLDFSHNVLQTVPSDTFPDYPSLMKLTLSGNPIKQIKTGAFQPLSYLVT 151
A++ L++L L + N +Q++ F SL KL + ++ P+ +L T
Sbjct: 69 DGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENF---PIGHLKT 125
Query: 152 LELSKCGIEVIEDAA----FVGLDSLEWLKLDNNKITTISGSNI 191
L+ +I+ F L +LE L L +NKI +I +++
Sbjct: 126 LKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDL 169
Score = 37.7 bits (86), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 34/61 (55%)
Query: 74 LVNLQKIYLSRCRISVIDSKAFRGLTNLVDLDFSHNVLQTVPSDTFPDYPSLMKLTLSGN 133
L NL + LS+C++ + AF L++L L+ + N L++VP F SL K+ L N
Sbjct: 469 LRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTN 528
Query: 134 P 134
P
Sbjct: 529 P 529
>pdb|2V9S|A Chain A, Second Lrr Domain Of Human Slit2
pdb|2V9S|B Chain B, Second Lrr Domain Of Human Slit2
pdb|2V9S|C Chain C, Second Lrr Domain Of Human Slit2
pdb|2V9S|D Chain D, Second Lrr Domain Of Human Slit2
Length = 220
Score = 62.8 bits (151), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 53/178 (29%), Positives = 80/178 (44%), Gaps = 2/178 (1%)
Query: 77 LQKIYLSRCRISVIDSKAFRGLTNLVDLDFSHNVLQTVPSDTFPDYPSLMKLTLSGNPIK 136
+ +I L + I VI AF L +D S+N + + D F SL L L GN I
Sbjct: 34 ITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKIT 93
Query: 137 QIKTGAFQPLSYLVTLELSKCGIEVIEDAAFVGLDSLEWLKLDNNKITTISGSNILP-TG 195
++ F+ L L L L+ I + AF L +L L L +NK+ TI+ P
Sbjct: 94 ELPKSLFEGLFSLQLLLLNANKINXLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRA 153
Query: 196 LHGIDLHHNPWTCDCLLIGLRRWLESTKTPMAIDPICSVPPRLSSVTIKQLSIDELAC 253
+ + L NP+ CDC L L +L + + C+ P RL++ I Q+ + C
Sbjct: 154 IQTMHLAQNPFICDCHLKWLADYLHTNPIETS-GARCTSPRRLANKRIGQIKSKKFRC 210
>pdb|2V9T|B Chain B, Complex Between The Second Lrr Domain Of Slit2 And The
First Ig Domain From Robo1
Length = 220
Score = 62.8 bits (151), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 53/178 (29%), Positives = 80/178 (44%), Gaps = 2/178 (1%)
Query: 77 LQKIYLSRCRISVIDSKAFRGLTNLVDLDFSHNVLQTVPSDTFPDYPSLMKLTLSGNPIK 136
+ +I L + I VI AF L +D S+N + + D F SL L L GN I
Sbjct: 34 ITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKIT 93
Query: 137 QIKTGAFQPLSYLVTLELSKCGIEVIEDAAFVGLDSLEWLKLDNNKITTISGSNILP-TG 195
++ F+ L L L L+ I + AF L +L L L +NK+ TI+ P
Sbjct: 94 ELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRA 153
Query: 196 LHGIDLHHNPWTCDCLLIGLRRWLESTKTPMAIDPICSVPPRLSSVTIKQLSIDELAC 253
+ + L NP+ CDC L L +L + + C+ P RL++ I Q+ + C
Sbjct: 154 IQTMHLAQNPFICDCHLKWLADYLHTNPIETS-GARCTSPRRLANKRIGQIKSKKFRC 210
>pdb|2Z80|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
pdb|2Z80|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 353
Score = 62.8 bits (151), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 51/167 (30%), Positives = 77/167 (46%), Gaps = 17/167 (10%)
Query: 17 ACPTSCICKWKGGKQTVECVNKSLITVVEGMDPNTQVLDYTGNNLKTLHNEKFQKMGLVN 76
+C + ICK G SL ++ G+ + LD + N + + N Q+ VN
Sbjct: 29 SCDRNGICKGSSG---------SLNSIPSGLTEAVKSLDLSNNRITYISNSDLQRC--VN 77
Query: 77 LQKIYLSRCRISVIDSKAFRGLTNLVDLDFSHNVLQTVPSDTFPDYPSLMKLTLSGNPIK 136
LQ + L+ I+ I+ +F L +L LD S+N L + S F SL L L GNP K
Sbjct: 78 LQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYK 137
Query: 137 QIKTGAFQPLSYLVTLELSKCG----IEVIEDAAFVGLDSLEWLKLD 179
+ G S+L L++ + G I+ F GL LE L++D
Sbjct: 138 TL--GETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEID 182
Score = 36.6 bits (83), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 39/80 (48%), Gaps = 1/80 (1%)
Query: 128 LTLSGNPIKQIKTGAFQPLSYLVTLELSKCGIEVIEDAAFVGLDSLEWLKLDNNKITTIS 187
L LS N I I Q L L L+ GI IE+ +F L SLE L L N ++ +S
Sbjct: 57 LDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLS 116
Query: 188 GSNILP-TGLHGIDLHHNPW 206
S P + L ++L NP+
Sbjct: 117 SSWFKPLSSLTFLNLLGNPY 136
Score = 35.0 bits (79), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 38/87 (43%), Gaps = 20/87 (22%)
Query: 48 DPNTQVLDYTGNNLKTLHNEKFQKMGLVNLQKIYLSRCRISVIDSKAFRGLTNLVDLDFS 107
+ N+ + +T N+K FQ M L+N ++ L++L+FS
Sbjct: 246 ETNSLIKKFTFRNVKITDESLFQVMKLLN--------------------QISGLLELEFS 285
Query: 108 HNVLQTVPSDTFPDYPSLMKLTLSGNP 134
N L++VP F SL K+ L NP
Sbjct: 286 RNQLKSVPDGIFDRLTSLQKIWLHTNP 312
Score = 31.2 bits (69), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 15/27 (55%), Positives = 15/27 (55%), Gaps = 1/27 (3%)
Query: 194 TGLHGIDLHHNPWTCDCLLIG-LRRWL 219
T L I LH NPW C C I L RWL
Sbjct: 301 TSLQKIWLHTNPWDCSCPRIDYLSRWL 327
>pdb|2Z7X|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 62.4 bits (150), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 51/167 (30%), Positives = 77/167 (46%), Gaps = 17/167 (10%)
Query: 17 ACPTSCICKWKGGKQTVECVNKSLITVVEGMDPNTQVLDYTGNNLKTLHNEKFQKMGLVN 76
+C + ICK G SL ++ G+ + LD + N + + N Q+ VN
Sbjct: 3 SCDRNGICKGSSG---------SLNSIPSGLTEAVKSLDLSNNRITYISNSDLQRC--VN 51
Query: 77 LQKIYLSRCRISVIDSKAFRGLTNLVDLDFSHNVLQTVPSDTFPDYPSLMKLTLSGNPIK 136
LQ + L+ I+ I+ +F L +L LD S+N L + S F SL L L GNP K
Sbjct: 52 LQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYK 111
Query: 137 QIKTGAFQPLSYLVTLELSKCG----IEVIEDAAFVGLDSLEWLKLD 179
+ G S+L L++ + G I+ F GL LE L++D
Sbjct: 112 TL--GETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEID 156
Score = 37.4 bits (85), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 39/80 (48%), Gaps = 1/80 (1%)
Query: 128 LTLSGNPIKQIKTGAFQPLSYLVTLELSKCGIEVIEDAAFVGLDSLEWLKLDNNKITTIS 187
L LS N I I Q L L L+ GI IE+ +F L SLE L L N ++ +S
Sbjct: 31 LDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLS 90
Query: 188 GSNILP-TGLHGIDLHHNPW 206
S P + L ++L NP+
Sbjct: 91 SSWFKPLSSLTFLNLLGNPY 110
Score = 34.7 bits (78), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 40/142 (28%), Positives = 59/142 (41%), Gaps = 24/142 (16%)
Query: 98 LTNLVDLDFSHNVLQTVPSDTFPDYPSLMK-LTLSGNPIKQIKTGAFQPLSYLVT----- 151
L NL ++D S N ++P +P MK L LS I + + L L
Sbjct: 386 LKNLTNIDISKNSFHSMPETC--QWPEKMKYLNLSSTRIHSVTGCIPKTLEILDVSNNNL 443
Query: 152 ------------LELSKCGIEVIEDAAFVGLDSLEWLKLDNNKITTI-SGSNILPTGLHG 198
L +S+ + + DA+ + + L LK+ N++ ++ G T L
Sbjct: 444 NLFSLNLPQLKELYISRNKLMTLPDASLLPM--LLVLKISRNQLKSVPDGIFDRLTSLQK 501
Query: 199 IDLHHNPWTCDCLLIG-LRRWL 219
I LH NPW C C I L RWL
Sbjct: 502 IWLHTNPWDCSCPRIDYLSRWL 523
>pdb|3T6Q|A Chain A, Crystal Structure Of Mouse Rp105MD-1 Complex
pdb|3T6Q|B Chain B, Crystal Structure Of Mouse Rp105MD-1 Complex
Length = 606
Score = 62.0 bits (149), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 68/248 (27%), Positives = 107/248 (43%), Gaps = 37/248 (14%)
Query: 31 QTVECVNKSLITVVEGMDPNTQVLDYTGNNLKTLHNEKFQKMGLVNLQKIYLSRCRISVI 90
+T +C N L + + Q L+ + N +L E F++ L+ + L+ R+ V
Sbjct: 363 ETSDCCNLQLRNL-----SHLQSLNLSYNEPLSLKTEAFKECP--QLELLDLAFTRLKVK 415
Query: 91 DSKA-FRGLTNLVDLDFSHNVLQTVPSDTFPDYPSLMKLTLSGN--PIKQI-KTGAFQPL 146
D+++ F+ L L L+ SH++L F P+L L L GN P I KT + Q L
Sbjct: 416 DAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTL 475
Query: 147 SYLVTLELSKCGIEVIEDAAFVGLDSLEWLKLDNNKITTIS--------------GSN-- 190
L L LS C + I+ AF L + + L +N++T+ S SN
Sbjct: 476 GRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGIYLNLASNHI 535
Query: 191 --ILPTGL------HGIDLHHNPWTCDCLLIGLRRWLESTKTPM--AIDPICSVPPRLSS 240
ILP+ L I+L NP C C I W + + D +C PP L
Sbjct: 536 SIILPSLLPILSQQRTINLRQNPLDCTCSNIYFLEWYKENMQKLEDTEDTLCENPPLLRG 595
Query: 241 VTIKQLSI 248
V + +++
Sbjct: 596 VRLSDVTL 603
Score = 39.7 bits (91), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 47/182 (25%), Positives = 72/182 (39%), Gaps = 27/182 (14%)
Query: 24 CKWKGGKQTVECVNKSLITVVEGMDPNTQVLDYTGNNLKTLHNEKFQKMGLVNLQKIYLS 83
C K +T C N L + + +T+ L+++ N L T+ N F + L+NL + L+
Sbjct: 8 CIEKEVNKTYNCENLGLNEIPGTLPNSTECLEFSFNVLPTIQNTTFSR--LINLTFLDLT 65
Query: 84 RCRISVIDSKAFRGLTNLVDLDFSHNVLQTVPSDTFPDYPSLMKLTLSGNPIKQIKTGAF 143
RC+I I DTF L L L+ NP+ + A
Sbjct: 66 RCQIYWIHE------------------------DTFQSQHRLDTLVLTANPLIFMAETAL 101
Query: 144 QPLSYLVTLELSKCGIEVIEDAAFVGLDSLEWLKLDNNKITTISGSNILPT-GLHGIDLH 202
L L + GI I+ +LE L L +N I++I PT L +D
Sbjct: 102 SGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQ 161
Query: 203 HN 204
+N
Sbjct: 162 NN 163
Score = 32.3 bits (72), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 44/85 (51%), Gaps = 2/85 (2%)
Query: 77 LQKIYLSRCRISVIDSKAFRGLTNLVDLDFSHNVLQTVPSDTFPDYPSLMKLTLSGNPIK 136
LQ++ L+ +S + S GL+ L L S N + + + ++PSL L++ GN +
Sbjct: 280 LQELDLTATHLSELPS-GLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKR 338
Query: 137 -QIKTGAFQPLSYLVTLELSKCGIE 160
++ TG + L L L+LS IE
Sbjct: 339 LELGTGCLENLENLRELDLSHDDIE 363
>pdb|3G3A|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|C Chain C, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|E Chain E, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|G Chain G, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
Length = 178
Score = 58.9 bits (141), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 41/127 (32%), Positives = 61/127 (48%), Gaps = 6/127 (4%)
Query: 8 IATIIKIVSACPTSCICKWKGGKQTVECVNKSLITVVEGMDPNTQVLDYTGNNLKTLHNE 67
+A I SACP+ C C TV+C KSL +V G+ TQVL N + L
Sbjct: 1 MARIRARGSACPSQCSCS----GTTVDCSGKSLASVPTGIPTTTQVLYLYDNQITKLEPG 56
Query: 68 KFQKMGLVNLQKIYLSRCRISVIDSKAFRGLTNLVDLDFSHNVLQTVPSDTFPDYPSLMK 127
F + L L ++ L +++V+ + F LT L L + N L+++P F + SL
Sbjct: 57 VFDR--LTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTH 114
Query: 128 LTLSGNP 134
+ L NP
Sbjct: 115 IWLLNNP 121
>pdb|2R9U|A Chain A, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|B Chain B, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|C Chain C, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|D Chain D, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
Length = 174
Score = 58.5 bits (140), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 37/119 (31%), Positives = 57/119 (47%), Gaps = 6/119 (5%)
Query: 16 SACPTSCICKWKGGKQTVECVNKSLITVVEGMDPNTQVLDYTGNNLKTLHNEKFQKMGLV 75
+ CP+ C C + V C N L +V G+ + Q L N + L F LV
Sbjct: 4 AGCPSQCSCD----QTLVNCQNIRLASVPAGIPTDKQRLWLNNNQITKLEPGVFDH--LV 57
Query: 76 NLQKIYLSRCRISVIDSKAFRGLTNLVDLDFSHNVLQTVPSDTFPDYPSLMKLTLSGNP 134
NLQ++Y + +++ I + F LT L LD + N L+++P F + SL + L NP
Sbjct: 58 NLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYLYNNP 116
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 47/95 (49%), Gaps = 2/95 (2%)
Query: 127 KLTLSGNPIKQIKTGAFQPLSYLVTLELSKCGIEVIEDAAFVGLDSLEWLKLDNNKITTI 186
+L L+ N I +++ G F L L L + + I F L L L L++N + +I
Sbjct: 37 RLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSI 96
Query: 187 -SGSNILPTGLHGIDLHHNPWTCDCL-LIGLRRWL 219
G+ L I L++NPW C+C ++ LR W+
Sbjct: 97 PRGAFDNLKSLTHIYLYNNPWDCECRDIMYLRNWV 131
>pdb|3RG1|A Chain A, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|E Chain E, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|I Chain I, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|M Chain M, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|B Chain B, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|F Chain F, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|J Chain J, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|N Chain N, Crystal Structure Of The Rp105MD-1 Complex
Length = 612
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 47/171 (27%), Positives = 78/171 (45%), Gaps = 26/171 (15%)
Query: 24 CKWKGGKQTVECVNKSLITVVEGMDPNTQVLDYTGNNLKTLHNEKFQKMGLVNLQKIYLS 83
C K G +T C N L + + + T+VL+++ N L T+ N F + L+NL + L+
Sbjct: 7 CTEKEGNRTYNCENLGLREIPDTLPNTTEVLEFSFNFLPTIQNTTFSR--LINLIFLDLT 64
Query: 84 RCRISVIDSKAFRGLTNLVDLDFSHNVLQTVPSDTFPDYPSLMKLTLSGNPIKQIKTGAF 143
RC+I+ V DTF + L + L+GNP+ + +
Sbjct: 65 RCQIN------------------------WVHEDTFQSHHQLNTIVLTGNPLIFMAETSL 100
Query: 144 QPLSYLVTLELSKCGIEVIEDAAFVGLDSLEWLKLDNNKITTISGSNILPT 194
+L L L++ GI +E L++LE L L +N I++I+ PT
Sbjct: 101 TGPKFLKHLFLTQTGISNLEFIPVHNLENLESLHLGSNHISSINLPENFPT 151
Score = 45.8 bits (107), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 58/226 (25%), Positives = 88/226 (38%), Gaps = 30/226 (13%)
Query: 52 QVLDYTGNNLKTLHNEKFQKMGLVNLQKIYLSRCRISVIDSKAFRGLTNLVDLDFSHNVL 111
Q L+ + N L ++ F++ + L + + + S F+ L L L+ SH +L
Sbjct: 378 QYLNLSYNEPLGLEDQAFKECPQLELLDVAFTHLHVKAPHS-PFQNLHLLRVLNLSHCLL 436
Query: 112 QTVPSDTFPDYPSLMKLTLSGNPIKQ---IKTGAFQPLSYLVTLELSKCGIEVIEDAAFV 168
T L L L GN + KT Q + L L LS C + I+ AF
Sbjct: 437 DTSNQHLLAGLQDLRHLNLQGNSFQDGSISKTNLLQMVGSLEILILSSCNLLSIDQQAFH 496
Query: 169 GLDSLEWLKLDNNKITTIS--------------GSN---ILPTGL-------HGIDLHHN 204
GL ++ L L +N +T S SN I+P L I+L HN
Sbjct: 497 GLRNVNHLDLSHNSLTGDSMDALSHLKGLYLNMASNNIRIIPPHLLPALSQQSIINLSHN 556
Query: 205 PWTCDCLLIGLRRWLEST--KTPMAIDPICSVPPRLSSVTIKQLSI 248
P C C I W + K + + C+ PP L V + + +
Sbjct: 557 PLDCTCSNIHFITWYKENLHKLEDSEETTCANPPSLRGVKLSDVKL 602
Score = 31.6 bits (70), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 35/140 (25%), Positives = 59/140 (42%), Gaps = 26/140 (18%)
Query: 69 FQKMGLVNLQKIYLSRCRISVIDSKAFRGLTNLVDLDFSHNVLQTVPS------------ 116
F+ + ++++ I L + R S + S FR T + +LD + L +PS
Sbjct: 247 FEGLCDMSVESINLQKHRFSDLSSSTFRCFTRVQELDLTAAHLNGLPSGIEGMNSLKKLV 306
Query: 117 ---DTF--------PDYPSLMKLTLSGNPIK-QIKTGAFQPLSYLVTLELSKCGIEVIE- 163
++F +PSL L + GN K + T + L L L+LS IE +
Sbjct: 307 LNANSFDQLCQINAASFPSLRDLYIKGNMRKLDLGTRCLEKLENLQKLDLSHSDIEASDC 366
Query: 164 -DAAFVGLDSLEWLKLDNNK 182
+ L L++L L N+
Sbjct: 367 CNLQLKNLRHLQYLNLSYNE 386
>pdb|3G39|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor
Length = 170
Score = 57.0 bits (136), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 38/118 (32%), Positives = 57/118 (48%), Gaps = 6/118 (5%)
Query: 17 ACPTSCICKWKGGKQTVECVNKSLITVVEGMDPNTQVLDYTGNNLKTLHNEKFQKMGLVN 76
ACP+ C C TV+C KSL +V G+ TQVL N + L F + L
Sbjct: 2 ACPSQCSCS----GTTVDCSGKSLASVPTGIPTTTQVLYLYDNQITKLEPGVFDR--LTQ 55
Query: 77 LQKIYLSRCRISVIDSKAFRGLTNLVDLDFSHNVLQTVPSDTFPDYPSLMKLTLSGNP 134
L ++ L +++V+ + F LT L L + N L+++P F + SL + L NP
Sbjct: 56 LTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLLNNP 113
>pdb|1QZ1|A Chain A, Crystal Structure Of The Ig 1-2-3 Fragment Of Ncam
Length = 291
Score = 57.0 bits (136), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 50/89 (56%), Gaps = 8/89 (8%)
Query: 269 GKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSN 328
G++V+L+C PE ++W DG PI+NE E H ++S + SEL I N +
Sbjct: 211 GQSVTLVCDADGFPEPTMSWTKDGEPIENEEED-DEKH-IFSDD------SSELTIRNVD 262
Query: 329 IDDNGTFVCVAENQAGSTSSNYTIRIVLK 357
+D +VC+AEN+AG ++ +++ K
Sbjct: 263 KNDEAEYVCIAENKAGEQDASIHLKVFAK 291
Score = 34.7 bits (78), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 43/86 (50%), Gaps = 12/86 (13%)
Query: 265 EIQEGKNVSLLCKVSAIPEAK-ITWLFDGVPIQNESMSASESH--AVYSTEEGTEIKKSE 321
EI G++ LC+V+ + K I+W E +S ++ V++ ++ S
Sbjct: 13 EISVGESKFFLCQVAGDAKDKDISWF----SPNGEKLSPNQQRISVVWNDDDS-----ST 63
Query: 322 LLIYNSNIDDNGTFVCVAENQAGSTS 347
L IYN+NIDD G + CV + G+ S
Sbjct: 64 LTIYNANIDDAGIYKCVVTAEDGTQS 89
>pdb|3OJA|B Chain B, Crystal Structure Of Lrim1APL1C COMPLEX
Length = 597
Score = 57.0 bits (136), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 38/132 (28%), Positives = 64/132 (48%), Gaps = 6/132 (4%)
Query: 67 EKFQKMGLVNLQKIYLSRCRISVIDSKAFRGLTNLVDLDFSHNVLQTVPSDTFPDYPSLM 126
+ F+++ L+NL + +I ID+ AF + L N ++ +P F + P L
Sbjct: 72 DSFRQVELLNLNDL-----QIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLT 126
Query: 127 KLTLSGNPIKQIKTGAFQPLSYLVTLELSKCGIEVIEDAAFVGLDSLEWLKLDNNKITTI 186
L L N + + G F L TL +S +E IED F SL+ L+L +N++T +
Sbjct: 127 VLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV 186
Query: 187 SGSNILPTGLHG 198
S ++P+ H
Sbjct: 187 DLS-LIPSLFHA 197
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 41/144 (28%), Positives = 63/144 (43%), Gaps = 4/144 (2%)
Query: 73 GLVNLQKIYLSRCRISVIDSKAFRGLTNLVDLDFSHNVLQTVPSDTFPDYPSLMKLTLSG 132
G VN++ L ++ D+ LV++D S+N L+ + F L +L +S
Sbjct: 228 GPVNVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISN 287
Query: 133 NPIKQIKTGAFQPLSYLVTLELSKCGIEVIEDAAFVGLDSLEWLKLDNNKITTISGSNIL 192
N + + QP+ L L+LS + +E D LE L LD+N I T+ S
Sbjct: 288 NRLVALNLYG-QPIPTLKVLDLSHNHLLHVERNQ-PQFDRLENLYLDHNSIVTLKLST-- 343
Query: 193 PTGLHGIDLHHNPWTCDCLLIGLR 216
L + L HN W C+ L R
Sbjct: 344 HHTLKNLTLSHNDWDCNSLRALFR 367
>pdb|3O6N|A Chain A, Crystal Structure Of Apl1 Leucine-Rich Repeat Domain
Length = 390
Score = 56.6 bits (135), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 38/132 (28%), Positives = 64/132 (48%), Gaps = 6/132 (4%)
Query: 67 EKFQKMGLVNLQKIYLSRCRISVIDSKAFRGLTNLVDLDFSHNVLQTVPSDTFPDYPSLM 126
+ F+++ L+NL + +I ID+ AF + L N ++ +P F + P L
Sbjct: 66 DSFRQVELLNLNDL-----QIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLT 120
Query: 127 KLTLSGNPIKQIKTGAFQPLSYLVTLELSKCGIEVIEDAAFVGLDSLEWLKLDNNKITTI 186
L L N + + G F L TL +S +E IED F SL+ L+L +N++T +
Sbjct: 121 VLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV 180
Query: 187 SGSNILPTGLHG 198
S ++P+ H
Sbjct: 181 DLS-LIPSLFHA 191
Score = 43.9 bits (102), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 43/152 (28%), Positives = 65/152 (42%), Gaps = 4/152 (2%)
Query: 65 HNEKFQKMGLVNLQKIYLSRCRISVIDSKAFRGLTNLVDLDFSHNVLQTVPSDTFPDYPS 124
HN G VN++ L ++ D+ LV++D S+N L+ + F
Sbjct: 214 HNSINVVRGPVNVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQR 273
Query: 125 LMKLTLSGNPIKQIKTGAFQPLSYLVTLELSKCGIEVIEDAAFVGLDSLEWLKLDNNKIT 184
L +L +S N + + QP+ L L+LS + +E D LE L LD+N I
Sbjct: 274 LERLYISNNRLVALNLYG-QPIPTLKVLDLSHNHLLHVERNQ-PQFDRLENLYLDHNSIV 331
Query: 185 TISGSNILPTGLHGIDLHHNPWTCDCLLIGLR 216
T+ S L + L HN W C+ L R
Sbjct: 332 TLKLST--HHTLKNLTLSHNDWDCNSLRALFR 361
>pdb|3G3B|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|C Chain C, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|E Chain E, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|G Chain G, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
Length = 170
Score = 56.6 bits (135), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 38/118 (32%), Positives = 57/118 (48%), Gaps = 6/118 (5%)
Query: 17 ACPTSCICKWKGGKQTVECVNKSLITVVEGMDPNTQVLDYTGNNLKTLHNEKFQKMGLVN 76
ACP+ C C TV+C KSL +V G+ TQVL N + L F + L
Sbjct: 2 ACPSQCSCS----GTTVDCSGKSLASVPTGIPTTTQVLYLYDNRITKLEPGVFDR--LTQ 55
Query: 77 LQKIYLSRCRISVIDSKAFRGLTNLVDLDFSHNVLQTVPSDTFPDYPSLMKLTLSGNP 134
L ++ L +++V+ + F LT L L + N L+++P F + SL + L NP
Sbjct: 56 LTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLRSLTHIWLLNNP 113
>pdb|2DM3|A Chain A, Solution Structure Of The Second Ig Domain Of Human
Palladin
Length = 110
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/97 (30%), Positives = 47/97 (48%), Gaps = 9/97 (9%)
Query: 264 LEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELL 323
L +QEGK + CKVS +P ++W DG P++ +S +H + E G L+
Sbjct: 19 LTVQEGKLCRMDCKVSGLPTPDLSWQLDGKPVRPDS-----AHKMLVRENGVH----SLI 69
Query: 324 IYNSNIDDNGTFVCVAENQAGSTSSNYTIRIVLKEEN 360
I D G + C+A N+AG S + + + KE
Sbjct: 70 IEPVTSRDAGIYTCIATNRAGQNSFSLELVVAAKESG 106
>pdb|3UL8|A Chain A, Crystal Structure Of The Tv3 Mutant V134l
Length = 279
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 64/243 (26%), Positives = 97/243 (39%), Gaps = 58/243 (23%)
Query: 32 TVECVNKSLITVVEGMDPNTQVLDYTGNNLKTLHNEKFQKMGLVNLQKIYLSRCRISVID 91
T +C+ + + + + +T+ LD + N L+ L + F LQ + LSRC I I+
Sbjct: 13 TYQCMELNFYKIPDNLPFSTKNLDLSFNPLRHLGSYSF--FSFPELQVLDLSRCEIQTIE 70
Query: 92 SKAFRGLTNLVDLDFSHNVLQTVPSDTFPDYPSLMKL--------TLSGNPIKQIKT--- 140
A++ L++L L + N +Q++ F SL KL +L PI +KT
Sbjct: 71 DGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVALETNLASLENFPIGHLKTLKE 130
Query: 141 --------------GAFQPLSYLVTLELSKCGIE-------------------------- 160
F L+ L L+LS I+
Sbjct: 131 LNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNP 190
Query: 161 --VIEDAAFVGLDSLEWLKLDNNKITTI-SGSNILPTGLHGIDLHHNPWTCDCLLIG-LR 216
I+ AF + L+ L LD N++ ++ G T L I LH NPW C C I L
Sbjct: 191 MNFIQPGAFKEI-RLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLS 249
Query: 217 RWL 219
RWL
Sbjct: 250 RWL 252
>pdb|3ULA|A Chain A, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
pdb|3ULA|C Chain C, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
Length = 279
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 64/243 (26%), Positives = 97/243 (39%), Gaps = 58/243 (23%)
Query: 32 TVECVNKSLITVVEGMDPNTQVLDYTGNNLKTLHNEKFQKMGLVNLQKIYLSRCRISVID 91
T +C+ + + + + +T+ LD + N L+ L + F LQ + LSRC I I+
Sbjct: 13 TYQCMELNFYKIPDNLPFSTKNLDLSWNPLRHLGSYSF--FSFPELQVLDLSRCEIQTIE 70
Query: 92 SKAFRGLTNLVDLDFSHNVLQTVPSDTFPDYPSLMKL--------TLSGNPIKQIKT--- 140
A++ L++L L + N +Q++ F SL KL +L PI +KT
Sbjct: 71 DGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKE 130
Query: 141 --------------GAFQPLSYLVTLELSKCGIE-------------------------- 160
F L+ L L+LS I+
Sbjct: 131 LNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNP 190
Query: 161 --VIEDAAFVGLDSLEWLKLDNNKITTI-SGSNILPTGLHGIDLHHNPWTCDCLLIG-LR 216
I+ AF + L+ L LD N++ ++ G T L I LH NPW C C I L
Sbjct: 191 MNFIQPGAFKEI-RLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLS 249
Query: 217 RWL 219
RWL
Sbjct: 250 RWL 252
>pdb|3UL7|A Chain A, Crystal Structure Of The Tv3 Mutant F63w
Length = 278
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 64/243 (26%), Positives = 97/243 (39%), Gaps = 58/243 (23%)
Query: 32 TVECVNKSLITVVEGMDPNTQVLDYTGNNLKTLHNEKFQKMGLVNLQKIYLSRCRISVID 91
T +C+ + + + + +T+ LD + N L+ L + F LQ + LSRC I I+
Sbjct: 12 TYQCMELNFYKIPDNLPFSTKNLDLSWNPLRHLGSYSF--FSFPELQVLDLSRCEIQTIE 69
Query: 92 SKAFRGLTNLVDLDFSHNVLQTVPSDTFPDYPSLMKL--------TLSGNPIKQIKT--- 140
A++ L++L L + N +Q++ F SL KL +L PI +KT
Sbjct: 70 DGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKE 129
Query: 141 --------------GAFQPLSYLVTLELSKCGIE-------------------------- 160
F L+ L L+LS I+
Sbjct: 130 LNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNP 189
Query: 161 --VIEDAAFVGLDSLEWLKLDNNKITTI-SGSNILPTGLHGIDLHHNPWTCDCLLIG-LR 216
I+ AF + L+ L LD N++ ++ G T L I LH NPW C C I L
Sbjct: 190 MNFIQPGAFKEI-RLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLS 248
Query: 217 RWL 219
RWL
Sbjct: 249 RWL 251
>pdb|2Z62|A Chain A, Crystal Structure Of The Tv3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z65|A Chain A, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
pdb|2Z65|B Chain B, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
Length = 276
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 64/243 (26%), Positives = 97/243 (39%), Gaps = 58/243 (23%)
Query: 32 TVECVNKSLITVVEGMDPNTQVLDYTGNNLKTLHNEKFQKMGLVNLQKIYLSRCRISVID 91
T +C+ + + + + +T+ LD + N L+ L + F LQ + LSRC I I+
Sbjct: 11 TYQCMELNFYKIPDNLPFSTKNLDLSFNPLRHLGSYSF--FSFPELQVLDLSRCEIQTIE 68
Query: 92 SKAFRGLTNLVDLDFSHNVLQTVPSDTFPDYPSLMKL--------TLSGNPIKQIKT--- 140
A++ L++L L + N +Q++ F SL KL +L PI +KT
Sbjct: 69 DGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKE 128
Query: 141 --------------GAFQPLSYLVTLELSKCGIE-------------------------- 160
F L+ L L+LS I+
Sbjct: 129 LNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNP 188
Query: 161 --VIEDAAFVGLDSLEWLKLDNNKITTI-SGSNILPTGLHGIDLHHNPWTCDCLLIG-LR 216
I+ AF + L+ L LD N++ ++ G T L I LH NPW C C I L
Sbjct: 189 MNFIQPGAFKEI-RLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLS 247
Query: 217 RWL 219
RWL
Sbjct: 248 RWL 250
>pdb|3B2D|A Chain A, Crystal Structure Of Human Rp105MD-1 Complex
pdb|3B2D|B Chain B, Crystal Structure Of Human Rp105MD-1 Complex
Length = 603
Score = 53.1 bits (126), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 45/164 (27%), Positives = 73/164 (44%), Gaps = 26/164 (15%)
Query: 23 ICKWKGGKQTVECVNKSLITVVEGMDPNTQVLDYTGNNLKTLHNEKFQKMGLVNLQKIYL 82
+C K +T C N L + + + T+ L+++ N L T+HN F + L+NL + L
Sbjct: 4 MCIEKEANKTYNCENLGLSEIPDTLPNTTEFLEFSFNFLPTIHNRTFSR--LMNLTFLDL 61
Query: 83 SRCRISVIDSKAFRGLTNLVDLDFSHNVLQTVPSDTFPDYPSLMKLTLSGNPIKQIKTGA 142
+RC+I+ I DTF + L L L+GNP+ + +
Sbjct: 62 TRCQINWIH------------------------EDTFQSHHQLSTLVLTGNPLIFMAETS 97
Query: 143 FQPLSYLVTLELSKCGIEVIEDAAFVGLDSLEWLKLDNNKITTI 186
L L L + GI +E L++LE L L +N I++I
Sbjct: 98 LNGPKSLKHLFLIQTGISNLEFIPVHNLENLESLYLGSNHISSI 141
Score = 49.3 bits (116), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 59/231 (25%), Positives = 91/231 (39%), Gaps = 33/231 (14%)
Query: 52 QVLDYTGNNLKTLHNEKFQKMGLVNLQKIYLSRCRISVIDSKAFRGLTNLVDLDFSHNVL 111
Q L+ + N L ++ F++ + L + +R I+ S F+ L L L+ ++ L
Sbjct: 376 QTLNLSHNEPLGLQSQAFKECPQLELLDLAFTRLHINAPQS-PFQNLHFLQVLNLTYCFL 434
Query: 112 QTVPSDTFPDYPSLMKLTLSGNPIKQ---IKTGAFQPLSYLVTLELSKCGIEVIEDAAFV 168
T P L L L GN + KT Q + L L LS CG+ I+ AF
Sbjct: 435 DTSNQHLLAGLPVLRHLNLKGNHFQDGTITKTNLLQTVGSLEVLILSSCGLLSIDQQAFH 494
Query: 169 GLDSLEWLKLDNNKIT----------------------TISGSNILP--TGLHGIDLHHN 204
L + + L +N +T I +LP + I+L HN
Sbjct: 495 SLGKMSHVDLSHNSLTCDSIDSLSHLKGIYLNLAANSINIISPRLLPILSQQSTINLSHN 554
Query: 205 PWTCDCLLIGLRRWLEST--KTPMAIDPICSVPPRLSSVTIKQLSIDELAC 253
P C C I W + K + + C+ PP L V +LS +L+C
Sbjct: 555 PLDCTCSNIHFLTWYKENLHKLEGSEETTCANPPSLRGV---KLSDVKLSC 602
Score = 48.5 bits (114), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 64/227 (28%), Positives = 91/227 (40%), Gaps = 37/227 (16%)
Query: 56 YTGNNLKTLHNEK--FQKMGLVNLQKIYLSRCRISVID--SKAFRGLTNLVDLDFSHNVL 111
Y N+K LH +K+G NLQ + LS I D S + L++L L+ SHN
Sbjct: 328 YIRGNVKKLHLGVGCLEKLG--NLQTLDLSHNDIEASDCCSLQLKNLSHLQTLNLSHNEP 385
Query: 112 QTVPSDTFPDYPSLMKLTLSGNPIK-QIKTGAFQPLSYLVTLELSKCGIEVIEDAAFVGL 170
+ S F + P L L L+ + FQ L +L L L+ C ++ GL
Sbjct: 386 LGLQSQAFKECPQLELLDLAFTRLHINAPQSPFQNLHFLQVLNLTYCFLDTSNQHLLAGL 445
Query: 171 DSLEWLKLDNNKIT--TISGSNILPT------------GLHGI--------------DLH 202
L L L N TI+ +N+L T GL I DL
Sbjct: 446 PVLRHLNLKGNHFQDGTITKTNLLQTVGSLEVLILSSCGLLSIDQQAFHSLGKMSHVDLS 505
Query: 203 HNPWTCDCLLIGLRRWLESTKTPMAIDPICSVPPRLSSVTIKQLSID 249
HN TCD I L+ +A + I + PRL + +Q +I+
Sbjct: 506 HNSLTCDS--IDSLSHLKGIYLNLAANSINIISPRLLPILSQQSTIN 550
Score = 32.3 bits (72), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 33/127 (25%), Positives = 53/127 (41%), Gaps = 25/127 (19%)
Query: 75 VNLQKIYLSRCRISVIDSKAFRGLTNLVDLDFSHNVLQTVPSD----------------- 117
++++ + L R S I S F+ T L +LD + L+ +PS
Sbjct: 251 MSVESLNLQEHRFSDISSTTFQCFTQLQELDLTATHLKGLPSGMKGLNLLKKLVLSVNHF 310
Query: 118 ------TFPDYPSLMKLTLSGNPIK-QIKTGAFQPLSYLVTLELSKCGIEVIEDAAFVGL 170
+ ++PSL L + GN K + G + L L TL+LS IE D + L
Sbjct: 311 DQLCQISAANFPSLTHLYIRGNVKKLHLGVGCLEKLGNLQTLDLSHNDIEA-SDCCSLQL 369
Query: 171 DSLEWLK 177
+L L+
Sbjct: 370 KNLSHLQ 376
Score = 31.6 bits (70), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 34/72 (47%), Gaps = 2/72 (2%)
Query: 74 LVNLQKIYLSRCRISVIDSKAFRGLTNLVDLDFSHNVLQTVPSDTFPDYPSLMKLTL--S 131
L NL+ +YL IS I NL LDF +N + + + + L+L +
Sbjct: 125 LENLESLYLGSNHISSIKFPKDFPARNLKVLDFQNNAIHYISREDMRSLEQAINLSLNFN 184
Query: 132 GNPIKQIKTGAF 143
GN +K I+ GAF
Sbjct: 185 GNNVKGIELGAF 196
>pdb|3UL9|A Chain A, Structure Of The Tv3 Mutant M41e
Length = 278
Score = 53.1 bits (126), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 64/243 (26%), Positives = 96/243 (39%), Gaps = 58/243 (23%)
Query: 32 TVECVNKSLITVVEGMDPNTQVLDYTGNNLKTLHNEKFQKMGLVNLQKIYLSRCRISVID 91
T +C + + + + +T+ LD + N L+ L + F LQ + LSRC I I+
Sbjct: 12 TYQCEELNFYKIPDNLPFSTKNLDLSFNPLRHLGSYSF--FSFPELQVLDLSRCEIQTIE 69
Query: 92 SKAFRGLTNLVDLDFSHNVLQTVPSDTFPDYPSLMKL--------TLSGNPIKQIKT--- 140
A++ L++L L + N +Q++ F SL KL +L PI +KT
Sbjct: 70 DGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKE 129
Query: 141 --------------GAFQPLSYLVTLELSKCGIE-------------------------- 160
F L+ L L+LS I+
Sbjct: 130 LNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNP 189
Query: 161 --VIEDAAFVGLDSLEWLKLDNNKITTI-SGSNILPTGLHGIDLHHNPWTCDCLLIG-LR 216
I+ AF + L+ L LD N++ ++ G T L I LH NPW C C I L
Sbjct: 190 MNFIQPGAFKEI-RLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLS 248
Query: 217 RWL 219
RWL
Sbjct: 249 RWL 251
>pdb|3CIG|A Chain A, Crystal Structure Of Mouse Tlr3 Ectodomain
pdb|3CIY|A Chain A, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
pdb|3CIY|B Chain B, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
Length = 697
Score = 50.4 bits (119), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 50/176 (28%), Positives = 73/176 (41%), Gaps = 14/176 (7%)
Query: 74 LVNLQKIYLSRCRISVIDSKAFRGLTNLVDLDFSHNVLQTV--------PSDTFPDYPSL 125
L NL + LS I+ I+ GL NL LDF HN L + P + L
Sbjct: 479 LRNLTILDLSNNNIANINEDLLEGLENLEILDFQHNNLARLWKRANPGGPVNFLKGLSHL 538
Query: 126 MKLTLSGNPIKQIKTGAFQPLSYLVTLELSKCGIEVIEDAAFVGLDSLEWLKLDNNKITT 185
L L N + +I G F+ L L ++ L + +E F SL L L N IT+
Sbjct: 539 HILNLESNGLDEIPVGVFKNLFELKSINLGLNNLNKLEPFIFDDQTSLRSLNLQKNLITS 598
Query: 186 ISGSNILP--TGLHGIDLHHNPWTCDCLLIG-LRRWLESTKT---PMAIDPICSVP 235
+ P L+ +D+ NP+ C C I W+ T T ++ +C+ P
Sbjct: 599 VEKDVFGPPFQNLNSLDMRFNPFDCTCESISWFVNWINQTHTNISELSTHYLCNTP 654
Score = 50.4 bits (119), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 38/118 (32%), Positives = 58/118 (49%), Gaps = 11/118 (9%)
Query: 77 LQKIYLSRCRISVIDSKAFRGL--TNLVDLDFSHNVLQTVPSDTFPDYPSLMKLTLSGNP 134
+Q + L+ ++ F GL TNL LD S+N L V + +F PSL L+L N
Sbjct: 224 IQNLSLANNQLLATSESTFSGLKWTNLTQLDLSYNNLHDVGNGSFSYLPSLRYLSLEYNN 283
Query: 135 IKQIKTGAFQPLSYLVTLELSKCGIEV---------IEDAAFVGLDSLEWLKLDNNKI 183
I+++ +F LS L L L + + I+D +F L LE+L +D+N I
Sbjct: 284 IQRLSPRSFYGLSNLRYLSLKRAFTKQSVSLASHPNIDDFSFQWLKYLEYLNMDDNNI 341
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 36/135 (26%), Positives = 65/135 (48%), Gaps = 3/135 (2%)
Query: 54 LDYTGNNLKTLHNEKFQKMGLVNLQKIYLSRCRISVIDSKAFRGLTNLVDLDFSHNVLQT 113
L+ T N++ + N F +G + + + L+ + + +RGL N+ ++ S+N
Sbjct: 386 LNLTKNHISKIANGTFSWLGQLRILDLGLNEIE-QKLSGQEWRGLRNIFEIYLSYNKYLQ 444
Query: 114 VPSDTFPDYPSLMKLTLSGNPIKQ--IKTGAFQPLSYLVTLELSKCGIEVIEDAAFVGLD 171
+ + +F PSL +L L +K I F+PL L L+LS I I + GL+
Sbjct: 445 LSTSSFALVPSLQRLMLRRVALKNVDISPSPFRPLRNLTILDLSNNNIANINEDLLEGLE 504
Query: 172 SLEWLKLDNNKITTI 186
+LE L +N + +
Sbjct: 505 NLEILDFQHNNLARL 519
Score = 42.7 bits (99), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 51/188 (27%), Positives = 77/188 (40%), Gaps = 34/188 (18%)
Query: 49 PNTQVLDYTGNNLKTLHNEKFQKMGLVNLQKIYLSRCRISVIDSKAFRGLTNLVDLDFSH 108
P +VL+ N L + ++ F + NL ++ L I I S F+ NL+ LD SH
Sbjct: 73 PLLKVLNLQHNELSQISDQTF--VFCTNLTELDLMSNSIHKIKSNPFKNQKNLIKLDLSH 130
Query: 109 NVLQTVPSDT--------------------------FPDYPSLMKLTLSGNPIKQIKTGA 142
N L + T F SL KL LS NP+K+ G
Sbjct: 131 NGLSSTKLGTGVQLENLQELLLAKNKILALRSEELEFLGNSSLRKLDLSSNPLKEFSPGC 190
Query: 143 FQPLSYLVTLELSKCGI--EVIEDAAF-VGLDSLEWLKLDNNKITTISGSN---ILPTGL 196
FQ + L L L+ + + E + + S++ L L NN++ S S + T L
Sbjct: 191 FQTIGKLFALLLNNAQLNPHLTEKLCWELSNTSIQNLSLANNQLLATSESTFSGLKWTNL 250
Query: 197 HGIDLHHN 204
+DL +N
Sbjct: 251 TQLDLSYN 258
Score = 38.5 bits (88), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 48/176 (27%), Positives = 78/176 (44%), Gaps = 5/176 (2%)
Query: 33 VECVNKSLITVVEGMDPNTQVLDYTGNNLKTLHNEKFQKMGLVNLQKIYLSRCRISVIDS 92
+C + L + + + N VL+ T N L+ L F + L + IS ++
Sbjct: 9 ADCSHLKLTHIPDDLPSNITVLNLTHNQLRRLPPTNFTRYS--QLAILDAGFNSISKLEP 66
Query: 93 KAFRGLTNLVDLDFSHNVLQTVPSDTFPDYPSLMKLTLSGNPIKQIKTGAFQPLSYLVTL 152
+ + L L L+ HN L + TF +L +L L N I +IK+ F+ L+ L
Sbjct: 67 ELCQILPLLKVLNLQHNELSQISDQTFVFCTNLTELDLMSNSIHKIKSNPFKNQKNLIKL 126
Query: 153 ELSKCGIEVIEDAAFVGLDSLEWLKLDNNKITTISGSNILPTG---LHGIDLHHNP 205
+LS G+ + V L++L+ L L NKI + + G L +DL NP
Sbjct: 127 DLSHNGLSSTKLGTGVQLENLQELLLAKNKILALRSEELEFLGNSSLRKLDLSSNP 182
>pdb|4ARN|A Chain A, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARN|B Chain B, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARN|C Chain C, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARN|D Chain D, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARR|A Chain A, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor With The Magic Triangle I3c
pdb|4ARR|B Chain B, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor With The Magic Triangle I3c
Length = 279
Score = 50.1 bits (118), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 45/184 (24%), Positives = 74/184 (40%), Gaps = 32/184 (17%)
Query: 39 SLITVVEGMDPNTQVL--DYTGNNLKTLHNEKFQKMGLVNLQKIYLSRCRISVIDSKAFR 96
S++ + + P T + D G N+ H ++ L L++ + R++ I +
Sbjct: 90 SILDYLGIVSPTTLIFESDNLGMNITRQHLDR-----LHGLKRFRFTTRRLTHIPANLLT 144
Query: 97 GLTNLVDLDFSHNVLQTVPSDTFPDYPSLMKLTLSGNPIKQIKTGAFQPLSYLVTLELSK 156
+ NL L+ N+ + +PS F D +L + N ++Q+ G F + L L L+
Sbjct: 145 DMRNLSHLELRANI-EEMPSHLFDDLENLESIEFGSNKLRQMPRGIFGKMPKLKQLNLAS 203
Query: 157 CGIEVIEDAAFVGLDSLEWLKLDNNKITTISGSNILPTGLHGIDLHHNPWTCDCLLIG-L 215
++ + D F L T L I LH NPW C C I L
Sbjct: 204 NQLKSVPDGIFDRL-----------------------TSLQKIWLHTNPWDCSCPRIDYL 240
Query: 216 RRWL 219
RWL
Sbjct: 241 SRWL 244
>pdb|3J0A|A Chain A, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
pdb|3J0A|B Chain B, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
Length = 844
Score = 50.1 bits (118), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 33/131 (25%), Positives = 66/131 (50%)
Query: 56 YTGNNLKTLHNEKFQKMGLVNLQKIYLSRCRISVIDSKAFRGLTNLVDLDFSHNVLQTVP 115
+ +N+K F + +++ + LS + ++S+ F L +L L+ ++N + +
Sbjct: 247 FGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIA 306
Query: 116 SDTFPDYPSLMKLTLSGNPIKQIKTGAFQPLSYLVTLELSKCGIEVIEDAAFVGLDSLEW 175
+ F +L L LS N + ++ + F L + ++L K I +I+D F L+ L+
Sbjct: 307 DEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQT 366
Query: 176 LKLDNNKITTI 186
L L +N +TTI
Sbjct: 367 LDLRDNALTTI 377
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 39/76 (51%), Gaps = 2/76 (2%)
Query: 113 TVPSDTFPDYPSLMKLTLSGNPIKQIKTGAFQPLSYLVTLELSKCGIE--VIEDAAFVGL 170
T+ + F + P+L L L + I + AFQ L +L L L CG+ V++D F L
Sbjct: 63 TIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNL 122
Query: 171 DSLEWLKLDNNKITTI 186
+L L L N+I ++
Sbjct: 123 KALTRLDLSKNQIRSL 138
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 33/103 (32%), Positives = 50/103 (48%), Gaps = 9/103 (8%)
Query: 49 PNTQVLDYTGNNLKTLHNEKFQKMGLVNLQKIYLSRCRIS--VIDSKAFRGLTNLVDLDF 106
PN ++LD + + LH + FQ GL +L ++ L C +S V+ FR L L LD
Sbjct: 73 PNLRILDLGSSKIYFLHPDAFQ--GLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDL 130
Query: 107 SHNVLQTV---PSDTFPDYPSLMKLTLSGNPIKQIKTGAFQPL 146
S N ++++ PS F SL + S N I + +PL
Sbjct: 131 SKNQIRSLYLHPS--FGKLNSLKSIDFSSNQIFLVCEHELEPL 171
Score = 38.9 bits (89), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 35/136 (25%), Positives = 58/136 (42%), Gaps = 7/136 (5%)
Query: 117 DTFPDYPSLMKLTLSGNPIKQIKTGAFQPLSYLVTLELSKCGIEVIEDAAFVGLDSLEWL 176
D F L L L+ N + + G F L+ L L L+ + V+ +LE L
Sbjct: 474 DVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLPA--NLEIL 531
Query: 177 KLDNNKITTISGSNILPTGLHGIDLHHNPWTCDCLLIGLRRWLESTKTPMA---IDPICS 233
+ N++ ++ + + L +D+ HN + C+C L WL T +A D C
Sbjct: 532 DISRNQL--LAPNPDVFVSLSVLDITHNKFICECELSTFINWLNHTNVTIAGPPADIYCV 589
Query: 234 VPPRLSSVTIKQLSID 249
P S V++ LS +
Sbjct: 590 YPDSFSGVSLFSLSTE 605
Score = 35.8 bits (81), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 45/170 (26%), Positives = 75/170 (44%), Gaps = 7/170 (4%)
Query: 124 SLMKLTLSGNPIKQIKTGAFQPLSYLVTLELSKCGIEVIEDAAFVGLDSLEWLKLDNNKI 183
S+ L LS + + + F+ L L L L+ I I D AF GLD+L+ L L N +
Sbjct: 267 SVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLL 326
Query: 184 TTISGSNI--LPTGLHGIDLHHNPWTCDCLLIGLRRWLESTKTPMAIDPICSVPPRLSSV 241
+ SN LP + IDL N + ++LE +T D + + S+
Sbjct: 327 GELYSSNFYGLPKVAY-IDLQKNH--IAIIQDQTFKFLEKLQTLDLRDNALTTIHFIPSI 383
Query: 242 TIKQLSIDELACEPQITPSTFYLEIQEGK--NVSLLCKVSAIPEAKITWL 289
LS ++L P+I + + + E + N+ +L + +P +I L
Sbjct: 384 PDIFLSGNKLVTLPKINLTANLIHLSENRLENLDILYFLLRVPHLQILIL 433
>pdb|2Z66|A Chain A, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|B Chain B, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|C Chain C, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|D Chain D, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 306
Score = 50.1 bits (118), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 55/179 (30%), Positives = 83/179 (46%), Gaps = 14/179 (7%)
Query: 18 CPTSCICKWKGGKQTVECVNKSLITVVEGMDPNTQVLDYTGNNLKTLHNEKFQKMGLVNL 77
CP+ C C G + + C +K L +V G+ + L+ N L++L + F K L L
Sbjct: 1 CPSRCSC---SGTE-IRCNSKGLTSVPTGIPSSATRLELESNKLQSLPHGVFDK--LTQL 54
Query: 78 QKIYLSRCRISV--IDSKAFRGLTNLVDLDFSHNVLQTVPSDTFPDYPSLMKLTLSGNPI 135
K+ LS +S S++ G T+L LD S N + T+ S+ F L L + +
Sbjct: 55 TKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN-FLGLEQLEHLDFQHSNL 113
Query: 136 KQI-KTGAFQPLSYLVTLELSKCGIEVIEDAAFVGLDSLEWLKLDNNKITTISGSNILP 193
KQ+ + F L L+ L++S V + F GL SLE LK+ N N LP
Sbjct: 114 KQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQ----ENFLP 168
Score = 33.1 bits (74), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 38/76 (50%), Gaps = 3/76 (3%)
Query: 74 LVNLQKIYLSRCRISVIDSKAFRGLTNLVDLDFSHNVLQTVPSDTFPDYPSLMKLTLSGN 133
L NL + LS+C++ + AF L++L L+ SHN ++ DTFP Y L L +
Sbjct: 174 LRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSL--DTFP-YKCLNSLQVLDY 230
Query: 134 PIKQIKTGAFQPLSYL 149
+ I T Q L +
Sbjct: 231 SLNHIMTSKKQELQHF 246
>pdb|2YR3|A Chain A, Solution Structure Of The Fourth Ig-Like Domain From
Myosin Light Chain Kinase, Smooth Muscle
Length = 99
Score = 49.7 bits (117), Expect = 6e-06, Method: Composition-based stats.
Identities = 29/80 (36%), Positives = 42/80 (52%), Gaps = 13/80 (16%)
Query: 268 EGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNS 327
EG++ L C V P +ITWL +G PIQ +A + E G +EL I ++
Sbjct: 25 EGQDFVLQCSVRGTPVPRITWLLNGQPIQ---------YARSTCEAGV----AELHIQDA 71
Query: 328 NIDDNGTFVCVAENQAGSTS 347
+D+GT+ C+AEN G S
Sbjct: 72 LPEDHGTYTCLAENALGQVS 91
>pdb|2A0Z|A Chain A, The Molecular Structure Of Toll-like Receptor 3 Ligand
Binding Domain
Length = 705
Score = 49.7 bits (117), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 45/153 (29%), Positives = 68/153 (44%), Gaps = 27/153 (17%)
Query: 61 LKTLHNEKFQKMGLVNLQKIYLSRCRISVIDSKAF------------------------- 95
L+TL NE F + L + L++ +IS I+S AF
Sbjct: 372 LRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEW 431
Query: 96 RGLTNLVDLDFSHNVLQTVPSDTFPDYPSLMKLTLSGNPIKQIKTGA--FQPLSYLVTLE 153
RGL N+ ++ S+N + ++F PSL +L L +K + + FQPL L L+
Sbjct: 432 RGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILD 491
Query: 154 LSKCGIEVIEDAAFVGLDSLEWLKLDNNKITTI 186
LS I I D GL+ LE L L +N + +
Sbjct: 492 LSNNNIANINDDMLEGLEKLEILDLQHNNLARL 524
Score = 43.1 bits (100), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 45/156 (28%), Positives = 73/156 (46%), Gaps = 2/156 (1%)
Query: 31 QTVECVNKSLITVVEGMDPNTQVLDYTGNNLKTLHNEKFQKMGLVNLQKIYLSRCRISVI 90
+ +C + L V + + N VL+ T N L+ L F + L + + IS +
Sbjct: 12 EVADCSHLKLTQVPDDLPTNITVLNLTHNQLRRLPAANFTRYS--QLTSLDVGFNTISKL 69
Query: 91 DSKAFRGLTNLVDLDFSHNVLQTVPSDTFPDYPSLMKLTLSGNPIKQIKTGAFQPLSYLV 150
+ + + L L L+ HN L + TF +L +L L N I++IK F L+
Sbjct: 70 EPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLI 129
Query: 151 TLELSKCGIEVIEDAAFVGLDSLEWLKLDNNKITTI 186
TL+LS G+ + V L++L+ L L NNKI +
Sbjct: 130 TLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQAL 165
Score = 42.7 bits (99), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 40/131 (30%), Positives = 62/131 (47%), Gaps = 13/131 (9%)
Query: 77 LQKIYLSRCRISVIDSKAFRGL--TNLVDLDFSHNVLQTVPSDTFPDYPSLMKLTLSGNP 134
++ + LS ++S + F GL TNL LD S+N L V +D+F P L L N
Sbjct: 229 IRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNN 288
Query: 135 IKQIKTGAFQPLSYLVTLELSK---------CGIEVIEDAAFVGLDSLEWLKLDNNKITT 185
I+ + + + L + L L + + I+D +F L LE L +++N I
Sbjct: 289 IQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPG 348
Query: 186 ISGSNILPTGL 196
I SN+ TGL
Sbjct: 349 IK-SNMF-TGL 357
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 51/189 (26%), Positives = 77/189 (40%), Gaps = 36/189 (19%)
Query: 49 PNTQVLDYTGNNLKTLHNEKFQKMGLVNLQKIYLSRCRISVIDSKAFRGLTNLVDLDFSH 108
P +VL+ N L L ++ F NL +++L I I + F NL+ LD SH
Sbjct: 78 PMLKVLNLQHNELSQLSDKTFA--FCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSH 135
Query: 109 N---------------------------VLQTVPSDTFPDYPSLMKLTLSGNPIKQIKTG 141
N L++ D F + SL KL LS N IK+ G
Sbjct: 136 NGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFAN-SSLKKLELSSNQIKEFSPG 194
Query: 142 AFQPLSYLVTLELS--KCGIEVIEDAAF-VGLDSLEWLKLDNNKITTISGSNILP---TG 195
F + L L L+ + G + E + S+ L L N++++T S + L T
Sbjct: 195 CFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTN 254
Query: 196 LHGIDLHHN 204
L +DL +N
Sbjct: 255 LTMLDLSYN 263
Score = 35.8 bits (81), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 32/110 (29%), Positives = 48/110 (43%), Gaps = 9/110 (8%)
Query: 43 VVEGMDPNTQVLDYTGNNLKTLHNEK-------FQKMGLVNLQKIYLSRCRISVIDSKAF 95
++EG++ ++LD NNL L F K GL +L + L I + F
Sbjct: 504 MLEGLEK-LEILDLQHNNLARLWKHANPGGPIYFLK-GLSHLHILNLESNGFDEIPVEVF 561
Query: 96 RGLTNLVDLDFSHNVLQTVPSDTFPDYPSLMKLTLSGNPIKQIKTGAFQP 145
+ L L +D N L T+P+ F + SL L L N I ++ F P
Sbjct: 562 KDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGP 611
Score = 32.0 bits (71), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 33/147 (22%), Positives = 52/147 (35%), Gaps = 26/147 (17%)
Query: 95 FRGLTNLVDLDFSHNVLQTVPSDTFPDYPSLMKLTLSGNPIKQIKTGAFQPLSYLVTLEL 154
+GL++L L+ N +P + F D L + L N + + F L +L L
Sbjct: 537 LKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNL 596
Query: 155 SKCGIEVIEDAAFVGLDSLEWLKLDNNKITTISGSNILPTGLHGIDLHHNPWTCDCLLIG 214
K I +E F G L +D+ NP+ C C I
Sbjct: 597 QKNLITSVEKKVF--------------------GPAF--RNLTELDMRFNPFDCTCESIA 634
Query: 215 -LRRWLESTKT---PMAIDPICSVPPR 237
W+ T T ++ +C+ PP
Sbjct: 635 WFVNWINETHTNIPELSSHYLCNTPPH 661
>pdb|3ULU|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form1)
pdb|3ULV|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form2)
Length = 694
Score = 49.7 bits (117), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 45/153 (29%), Positives = 68/153 (44%), Gaps = 27/153 (17%)
Query: 61 LKTLHNEKFQKMGLVNLQKIYLSRCRISVIDSKAF------------------------- 95
L+TL NE F + L + L++ +IS I+S AF
Sbjct: 377 LRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEW 436
Query: 96 RGLTNLVDLDFSHNVLQTVPSDTFPDYPSLMKLTLSGNPIKQIKTGA--FQPLSYLVTLE 153
RGL N+ ++ S+N + ++F PSL +L L +K + + FQPL L L+
Sbjct: 437 RGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILD 496
Query: 154 LSKCGIEVIEDAAFVGLDSLEWLKLDNNKITTI 186
LS I I D GL+ LE L L +N + +
Sbjct: 497 LSNNNIANINDDMLEGLEKLEILDLQHNNLARL 529
Score = 43.5 bits (101), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 45/156 (28%), Positives = 73/156 (46%), Gaps = 2/156 (1%)
Query: 31 QTVECVNKSLITVVEGMDPNTQVLDYTGNNLKTLHNEKFQKMGLVNLQKIYLSRCRISVI 90
+ +C + L V + + N VL+ T N L+ L F + L + + IS +
Sbjct: 17 EVADCSHLKLTQVPDDLPTNITVLNLTHNQLRRLPAANFTRYS--QLTSLDVGFNTISKL 74
Query: 91 DSKAFRGLTNLVDLDFSHNVLQTVPSDTFPDYPSLMKLTLSGNPIKQIKTGAFQPLSYLV 150
+ + + L L L+ HN L + TF +L +L L N I++IK F L+
Sbjct: 75 EPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLI 134
Query: 151 TLELSKCGIEVIEDAAFVGLDSLEWLKLDNNKITTI 186
TL+LS G+ + V L++L+ L L NNKI +
Sbjct: 135 TLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQAL 170
Score = 42.7 bits (99), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 40/131 (30%), Positives = 62/131 (47%), Gaps = 13/131 (9%)
Query: 77 LQKIYLSRCRISVIDSKAFRGL--TNLVDLDFSHNVLQTVPSDTFPDYPSLMKLTLSGNP 134
++ + LS ++S + F GL TNL LD S+N L V +D+F P L L N
Sbjct: 234 IRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNN 293
Query: 135 IKQIKTGAFQPLSYLVTLELSK---------CGIEVIEDAAFVGLDSLEWLKLDNNKITT 185
I+ + + + L + L L + + I+D +F L LE L +++N I
Sbjct: 294 IQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPG 353
Query: 186 ISGSNILPTGL 196
I SN+ TGL
Sbjct: 354 IK-SNMF-TGL 362
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 51/189 (26%), Positives = 77/189 (40%), Gaps = 36/189 (19%)
Query: 49 PNTQVLDYTGNNLKTLHNEKFQKMGLVNLQKIYLSRCRISVIDSKAFRGLTNLVDLDFSH 108
P +VL+ N L L ++ F NL +++L I I + F NL+ LD SH
Sbjct: 83 PMLKVLNLQHNELSQLSDKTFA--FCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSH 140
Query: 109 N---------------------------VLQTVPSDTFPDYPSLMKLTLSGNPIKQIKTG 141
N L++ D F + SL KL LS N IK+ G
Sbjct: 141 NGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFAN-SSLKKLELSSNQIKEFSPG 199
Query: 142 AFQPLSYLVTLELS--KCGIEVIEDAAF-VGLDSLEWLKLDNNKITTISGSNILP---TG 195
F + L L L+ + G + E + S+ L L N++++T S + L T
Sbjct: 200 CFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTN 259
Query: 196 LHGIDLHHN 204
L +DL +N
Sbjct: 260 LTMLDLSYN 268
Score = 35.8 bits (81), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 32/110 (29%), Positives = 48/110 (43%), Gaps = 9/110 (8%)
Query: 43 VVEGMDPNTQVLDYTGNNLKTLHNEK-------FQKMGLVNLQKIYLSRCRISVIDSKAF 95
++EG++ ++LD NNL L F K GL +L + L I + F
Sbjct: 509 MLEGLEK-LEILDLQHNNLARLWKHANPGGPIYFLK-GLSHLHILNLESNGFDEIPVEVF 566
Query: 96 RGLTNLVDLDFSHNVLQTVPSDTFPDYPSLMKLTLSGNPIKQIKTGAFQP 145
+ L L +D N L T+P+ F + SL L L N I ++ F P
Sbjct: 567 KDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGP 616
Score = 31.6 bits (70), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 33/147 (22%), Positives = 52/147 (35%), Gaps = 26/147 (17%)
Query: 95 FRGLTNLVDLDFSHNVLQTVPSDTFPDYPSLMKLTLSGNPIKQIKTGAFQPLSYLVTLEL 154
+GL++L L+ N +P + F D L + L N + + F L +L L
Sbjct: 542 LKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNL 601
Query: 155 SKCGIEVIEDAAFVGLDSLEWLKLDNNKITTISGSNILPTGLHGIDLHHNPWTCDCLLIG 214
K I +E F G L +D+ NP+ C C I
Sbjct: 602 QKNLITSVEKKVF--------------------GPAF--RNLTELDMRFNPFDCTCESIA 639
Query: 215 -LRRWLESTKT---PMAIDPICSVPPR 237
W+ T T ++ +C+ PP
Sbjct: 640 WFVNWINETHTNIPELSSHYLCNTPPH 666
>pdb|3V44|A Chain A, Crystal Structure Of The N-Terminal Fragment Of Zebrafish
Tlr5
Length = 407
Score = 49.3 bits (116), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 54/170 (31%), Positives = 74/170 (43%), Gaps = 17/170 (10%)
Query: 54 LDYTGNNLK-TLHNEKFQKMGLVNLQKIYLSRCRISVIDSKAFRGLTNLVDLD-FSHNVL 111
LD +GN K ++ F + +Q + LS S +F G TN D D F+ L
Sbjct: 217 LDLSGNGFKESMAKRFFDAIAGTKIQSLILSN---SYNMGSSF-GHTNFKDPDNFTFKGL 272
Query: 112 QTVPSDTFPDYPSLMKLTLSGNPIKQIKTGAFQPLSYLVTLELSKCGIEVIEDAAFVGLD 171
+ T LS + I + F + L L L++ I I+D AF GL
Sbjct: 273 EASGVKT---------CDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLT 323
Query: 172 SLEWLKLDNNKITTI-SGSNILPTGLHGIDLHHNPWTCDCLLIG-LRRWL 219
L+ L LD N++ ++ G T L I LH NPW C C I L RWL
Sbjct: 324 HLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSRWL 373
Score = 44.3 bits (103), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 39/121 (32%), Positives = 56/121 (46%), Gaps = 8/121 (6%)
Query: 98 LTNLVDLDFSHNVLQT----VPSDTFPDYPSLMKLTLSGNPIKQIKTGAFQPLSYLVTLE 153
+ L DL F QT + ++TF SL+ L L N Q++TGAF L+ L L
Sbjct: 50 FSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLT 109
Query: 154 LSKCGIE--VIEDAAFVGLDSLEWLKLDNNKITTISGSNILPT--GLHGIDLHHNPWTCD 209
L++C ++ V+ F L SLE L L +N I I ++ H +DL N
Sbjct: 110 LTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSI 169
Query: 210 C 210
C
Sbjct: 170 C 170
>pdb|1ZIW|A Chain A, Human Toll-Like Receptor 3 Extracellular Domain Structure
Length = 680
Score = 49.3 bits (116), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 45/153 (29%), Positives = 68/153 (44%), Gaps = 27/153 (17%)
Query: 61 LKTLHNEKFQKMGLVNLQKIYLSRCRISVIDSKAF------------------------- 95
L+TL NE F + L + L++ +IS I+S AF
Sbjct: 367 LRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEW 426
Query: 96 RGLTNLVDLDFSHNVLQTVPSDTFPDYPSLMKLTLSGNPIKQIKTGA--FQPLSYLVTLE 153
RGL N+ ++ S+N + ++F PSL +L L +K + + FQPL L L+
Sbjct: 427 RGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILD 486
Query: 154 LSKCGIEVIEDAAFVGLDSLEWLKLDNNKITTI 186
LS I I D GL+ LE L L +N + +
Sbjct: 487 LSNNNIANINDDMLEGLEKLEILDLQHNNLARL 519
Score = 43.1 bits (100), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 45/156 (28%), Positives = 73/156 (46%), Gaps = 2/156 (1%)
Query: 31 QTVECVNKSLITVVEGMDPNTQVLDYTGNNLKTLHNEKFQKMGLVNLQKIYLSRCRISVI 90
+ +C + L V + + N VL+ T N L+ L F + L + + IS +
Sbjct: 7 EVADCSHLKLTQVPDDLPTNITVLNLTHNQLRRLPAANFTRYS--QLTSLDVGFNTISKL 64
Query: 91 DSKAFRGLTNLVDLDFSHNVLQTVPSDTFPDYPSLMKLTLSGNPIKQIKTGAFQPLSYLV 150
+ + + L L L+ HN L + TF +L +L L N I++IK F L+
Sbjct: 65 EPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLI 124
Query: 151 TLELSKCGIEVIEDAAFVGLDSLEWLKLDNNKITTI 186
TL+LS G+ + V L++L+ L L NNKI +
Sbjct: 125 TLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQAL 160
Score = 42.7 bits (99), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 40/131 (30%), Positives = 62/131 (47%), Gaps = 13/131 (9%)
Query: 77 LQKIYLSRCRISVIDSKAFRGL--TNLVDLDFSHNVLQTVPSDTFPDYPSLMKLTLSGNP 134
++ + LS ++S + F GL TNL LD S+N L V +D+F P L L N
Sbjct: 224 IRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNN 283
Query: 135 IKQIKTGAFQPLSYLVTLELSK---------CGIEVIEDAAFVGLDSLEWLKLDNNKITT 185
I+ + + + L + L L + + I+D +F L LE L +++N I
Sbjct: 284 IQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPG 343
Query: 186 ISGSNILPTGL 196
I SN+ TGL
Sbjct: 344 IK-SNMF-TGL 352
Score = 39.7 bits (91), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 51/189 (26%), Positives = 77/189 (40%), Gaps = 36/189 (19%)
Query: 49 PNTQVLDYTGNNLKTLHNEKFQKMGLVNLQKIYLSRCRISVIDSKAFRGLTNLVDLDFSH 108
P +VL+ N L L ++ F NL +++L I I + F NL+ LD SH
Sbjct: 73 PMLKVLNLQHNELSQLSDKTFA--FCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSH 130
Query: 109 N---------------------------VLQTVPSDTFPDYPSLMKLTLSGNPIKQIKTG 141
N L++ D F + SL KL LS N IK+ G
Sbjct: 131 NGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFAN-SSLKKLELSSNQIKEFSPG 189
Query: 142 AFQPLSYLVTLELS--KCGIEVIEDAAF-VGLDSLEWLKLDNNKITTISGSNILP---TG 195
F + L L L+ + G + E + S+ L L N++++T S + L T
Sbjct: 190 CFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTN 249
Query: 196 LHGIDLHHN 204
L +DL +N
Sbjct: 250 LTMLDLSYN 258
Score = 35.8 bits (81), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 32/110 (29%), Positives = 48/110 (43%), Gaps = 9/110 (8%)
Query: 43 VVEGMDPNTQVLDYTGNNLKTLHNEK-------FQKMGLVNLQKIYLSRCRISVIDSKAF 95
++EG++ ++LD NNL L F K GL +L + L I + F
Sbjct: 499 MLEGLEK-LEILDLQHNNLARLWKHANPGGPIYFLK-GLSHLHILNLESNGFDEIPVEVF 556
Query: 96 RGLTNLVDLDFSHNVLQTVPSDTFPDYPSLMKLTLSGNPIKQIKTGAFQP 145
+ L L +D N L T+P+ F + SL L L N I ++ F P
Sbjct: 557 KDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGP 606
Score = 31.6 bits (70), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 33/147 (22%), Positives = 52/147 (35%), Gaps = 26/147 (17%)
Query: 95 FRGLTNLVDLDFSHNVLQTVPSDTFPDYPSLMKLTLSGNPIKQIKTGAFQPLSYLVTLEL 154
+GL++L L+ N +P + F D L + L N + + F L +L L
Sbjct: 532 LKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNL 591
Query: 155 SKCGIEVIEDAAFVGLDSLEWLKLDNNKITTISGSNILPTGLHGIDLHHNPWTCDCLLIG 214
K I +E F G L +D+ NP+ C C I
Sbjct: 592 QKNLITSVEKKVF--------------------GPAF--RNLTELDMRFNPFDCTCESIA 629
Query: 215 -LRRWLESTKT---PMAIDPICSVPPR 237
W+ T T ++ +C+ PP
Sbjct: 630 WFVNWINETHTNIPELSSHYLCNTPPH 656
>pdb|3VQ1|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ1|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ2|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
pdb|3VQ2|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
Length = 606
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 45/164 (27%), Positives = 78/164 (47%), Gaps = 9/164 (5%)
Query: 32 TVECVNKSLITVVEGMDPNTQVLDYTGNNLKTLHNEKFQKMGLVNLQKIYLSRCRISVID 91
T +C+++ L V + + +T+ +D + N LK L + F LQ + LSRC I I+
Sbjct: 15 TYQCMDQKLSKVPDDIPSSTKNIDLSFNPLKILKSYSFSNFS--ELQWLDLSRCEIETIE 72
Query: 92 SKAFRGLTNLVDLDFSHNVLQTVPSDTFPDYPSLMKLTLSGNPIKQIKTGAFQPLSYLVT 151
KA+ GL +L +L + N +Q+ +F SL L + +++ P+ L+T
Sbjct: 73 DKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESF---PIGQLIT 129
Query: 152 LELSKCGIEVIED----AAFVGLDSLEWLKLDNNKITTISGSNI 191
L+ I A F L +L + L N I TI+ +++
Sbjct: 130 LKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDL 173
Score = 39.7 bits (91), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 45/168 (26%), Positives = 70/168 (41%), Gaps = 26/168 (15%)
Query: 36 VNKSLITVVEGMDPNTQVLDYTGNNLKTLHNEKFQKMGLVNLQKIYLSRCRISVIDSKAF 95
+NK I+ + P+ LD + N L + +G +L+ + LS ++I S F
Sbjct: 337 MNKGSISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSF-NGAIIMSANF 395
Query: 96 RGLTNLVDLDFSHNVLQTVPSDTFPDYPSLMKLTLSGNPIKQIKTGAFQPLSYLVTLELS 155
GL L LDF H+ L+ V + AF L L+ L++S
Sbjct: 396 MGLEELQHLDFQHSTLKRVT-----------------------EFSAFLSLEKLLYLDIS 432
Query: 156 KCGIEVIEDAAFVGLDSLEWLKLDNNKITTISGSNILP--TGLHGIDL 201
++ D F+GL SL LK+ N + SN+ T L +DL
Sbjct: 433 YTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDL 480
>pdb|3FXI|A Chain A, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
pdb|3FXI|B Chain B, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
Length = 605
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 44/74 (59%)
Query: 103 DLDFSHNVLQTVPSDTFPDYPSLMKLTLSGNPIKQIKTGAFQPLSYLVTLELSKCGIEVI 162
+LD S N L+ + S +F +P L L LS I+ I+ GA+Q LS+L TL L+ I+ +
Sbjct: 32 NLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSL 91
Query: 163 EDAAFVGLDSLEWL 176
AF GL SL+ L
Sbjct: 92 ALGAFSGLSSLQKL 105
Score = 47.8 bits (112), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 43/164 (26%), Positives = 78/164 (47%), Gaps = 9/164 (5%)
Query: 32 TVECVNKSLITVVEGMDPNTQVLDYTGNNLKTLHNEKFQKMGLVNLQKIYLSRCRISVID 91
T +C+ + + + + +T+ LD + N L+ L + F LQ + LSRC I I+
Sbjct: 11 TYQCMELNFYKIPDNLPFSTKNLDLSFNPLRHLGSYSF--FSFPELQVLDLSRCEIQTIE 68
Query: 92 SKAFRGLTNLVDLDFSHNVLQTVPSDTFPDYPSLMKLTLSGNPIKQIKTGAFQPLSYLVT 151
A++ L++L L + N +Q++ F SL KL + ++ P+ +L T
Sbjct: 69 DGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENF---PIGHLKT 125
Query: 152 LELSKCGIEVIEDAA----FVGLDSLEWLKLDNNKITTISGSNI 191
L+ +I+ F L +LE L L +NKI +I +++
Sbjct: 126 LKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDL 169
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 38/157 (24%), Positives = 65/157 (41%), Gaps = 27/157 (17%)
Query: 94 AFRGLTNLVDLDFSHNVLQTVPSDTFPDYPSLMKLTLSGNPIKQ-IKTGAFQPLSYLVTL 152
F L NL+ LD SH + + F SL L ++GN ++ F L L L
Sbjct: 416 VFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFL 475
Query: 153 ELSKCGIEVIEDAAFVGLDSLEWLKLDNNKITTI----------------SGSNIL---- 192
+LS+C +E + AF L SL+ L + +N ++ S ++I+
Sbjct: 476 DLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKK 535
Query: 193 ------PTGLHGIDLHHNPWTCDCLLIGLRRWLESTK 223
P+ L ++L N + C C +W++ +
Sbjct: 536 QELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQR 572
Score = 32.7 bits (73), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 38/76 (50%), Gaps = 3/76 (3%)
Query: 74 LVNLQKIYLSRCRISVIDSKAFRGLTNLVDLDFSHNVLQTVPSDTFPDYPSLMKLTLSGN 133
L NL + LS+C++ + AF L++L L+ SHN ++ DTFP Y L L +
Sbjct: 469 LRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSL--DTFP-YKCLNSLQVLDY 525
Query: 134 PIKQIKTGAFQPLSYL 149
+ I T Q L +
Sbjct: 526 SLNHIMTSKKQELQHF 541
>pdb|2Z64|A Chain A, Crystal Structure Of Mouse Tlr4 And Mouse Md-2 Complex
Length = 599
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 45/164 (27%), Positives = 78/164 (47%), Gaps = 9/164 (5%)
Query: 32 TVECVNKSLITVVEGMDPNTQVLDYTGNNLKTLHNEKFQKMGLVNLQKIYLSRCRISVID 91
T +C+++ L V + + +T+ +D + N LK L + F LQ + LSRC I I+
Sbjct: 10 TYQCMDQKLSKVPDDIPSSTKNIDLSFNPLKILKSYSFSNFS--ELQWLDLSRCEIETIE 67
Query: 92 SKAFRGLTNLVDLDFSHNVLQTVPSDTFPDYPSLMKLTLSGNPIKQIKTGAFQPLSYLVT 151
KA+ GL +L +L + N +Q+ +F SL L + +++ P+ L+T
Sbjct: 68 DKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESF---PIGQLIT 124
Query: 152 LELSKCGIEVIED----AAFVGLDSLEWLKLDNNKITTISGSNI 191
L+ I A F L +L + L N I TI+ +++
Sbjct: 125 LKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDL 168
Score = 39.7 bits (91), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 45/168 (26%), Positives = 70/168 (41%), Gaps = 26/168 (15%)
Query: 36 VNKSLITVVEGMDPNTQVLDYTGNNLKTLHNEKFQKMGLVNLQKIYLSRCRISVIDSKAF 95
+NK I+ + P+ LD + N L + +G +L+ + LS ++I S F
Sbjct: 332 MNKGSISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSF-NGAIIMSANF 390
Query: 96 RGLTNLVDLDFSHNVLQTVPSDTFPDYPSLMKLTLSGNPIKQIKTGAFQPLSYLVTLELS 155
GL L LDF H+ L+ V + AF L L+ L++S
Sbjct: 391 MGLEELQHLDFQHSTLKRVT-----------------------EFSAFLSLEKLLYLDIS 427
Query: 156 KCGIEVIEDAAFVGLDSLEWLKLDNNKITTISGSNILP--TGLHGIDL 201
++ D F+GL SL LK+ N + SN+ T L +DL
Sbjct: 428 YTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDL 475
>pdb|4G8A|A Chain A, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
pdb|4G8A|B Chain B, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
Length = 635
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 44/74 (59%)
Query: 103 DLDFSHNVLQTVPSDTFPDYPSLMKLTLSGNPIKQIKTGAFQPLSYLVTLELSKCGIEVI 162
+LD S N L+ + S +F +P L L LS I+ I+ GA+Q LS+L TL L+ I+ +
Sbjct: 56 NLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSL 115
Query: 163 EDAAFVGLDSLEWL 176
AF GL SL+ L
Sbjct: 116 ALGAFSGLSSLQKL 129
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 43/164 (26%), Positives = 78/164 (47%), Gaps = 9/164 (5%)
Query: 32 TVECVNKSLITVVEGMDPNTQVLDYTGNNLKTLHNEKFQKMGLVNLQKIYLSRCRISVID 91
T +C+ + + + + +T+ LD + N L+ L + F LQ + LSRC I I+
Sbjct: 35 TYQCMELNFYKIPDNLPFSTKNLDLSFNPLRHLGSYSF--FSFPELQVLDLSRCEIQTIE 92
Query: 92 SKAFRGLTNLVDLDFSHNVLQTVPSDTFPDYPSLMKLTLSGNPIKQIKTGAFQPLSYLVT 151
A++ L++L L + N +Q++ F SL KL + ++ P+ +L T
Sbjct: 93 DGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENF---PIGHLKT 149
Query: 152 LELSKCGIEVIEDAA----FVGLDSLEWLKLDNNKITTISGSNI 191
L+ +I+ F L +LE L L +NKI +I +++
Sbjct: 150 LKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDL 193
Score = 44.3 bits (103), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 38/157 (24%), Positives = 65/157 (41%), Gaps = 27/157 (17%)
Query: 94 AFRGLTNLVDLDFSHNVLQTVPSDTFPDYPSLMKLTLSGNPIKQ-IKTGAFQPLSYLVTL 152
F L NL+ LD SH + + F SL L ++GN ++ F L L L
Sbjct: 440 VFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFL 499
Query: 153 ELSKCGIEVIEDAAFVGLDSLEWLKLDNNKITTI----------------SGSNIL---- 192
+LS+C +E + AF L SL+ L + +N ++ S ++I+
Sbjct: 500 DLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKK 559
Query: 193 ------PTGLHGIDLHHNPWTCDCLLIGLRRWLESTK 223
P+ L ++L N + C C +W++ +
Sbjct: 560 QELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQR 596
Score = 32.7 bits (73), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 38/76 (50%), Gaps = 3/76 (3%)
Query: 74 LVNLQKIYLSRCRISVIDSKAFRGLTNLVDLDFSHNVLQTVPSDTFPDYPSLMKLTLSGN 133
L NL + LS+C++ + AF L++L L+ SHN ++ DTFP Y L L +
Sbjct: 493 LRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSL--DTFP-YKCLNSLQVLDY 549
Query: 134 PIKQIKTGAFQPLSYL 149
+ I T Q L +
Sbjct: 550 SLNHIMTSKKQELQHF 565
>pdb|3TWI|D Chain D, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
pdb|3TWI|E Chain E, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
pdb|3TWI|F Chain F, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
Length = 179
Score = 48.5 bits (114), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 36/119 (30%), Positives = 53/119 (44%), Gaps = 6/119 (5%)
Query: 16 SACPTSCICKWKGGKQTVECVNKSLITVVEGMDPNTQVLDYTGNNLKTLHNEKFQKMGLV 75
+ACP+ C C TV C +SL +V G+ TQVL N + L F L
Sbjct: 11 AACPSQCSCS----GTTVNCQERSLASVPAGIPTTTQVLHLYINQITKLEPGVFDS--LT 64
Query: 76 NLQKIYLSRCRISVIDSKAFRGLTNLVDLDFSHNVLQTVPSDTFPDYPSLMKLTLSGNP 134
L + L+ +++ + F LT L L N L+++P F + SL + L NP
Sbjct: 65 QLTYLNLAVNQLTALPVGVFDKLTKLTHLALHINQLKSIPMGVFDNLKSLTHIYLFNNP 123
>pdb|1IE5|A Chain A, Nmr Structure Of The Third Immunoglobulin Domain From The
Neural Cell Adhesion Molecule
Length = 107
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 43/88 (48%), Gaps = 9/88 (10%)
Query: 270 KNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNI 329
++V+L C PE +TW DG PI+ E ++ YS SEL+I +
Sbjct: 29 QSVTLACDADGFPEPTMTWTKDGEPIEQE-----DNEEKYS----FNYDGSELIIKKVDK 79
Query: 330 DDNGTFVCVAENQAGSTSSNYTIRIVLK 357
D ++C+AEN+AG + +++ K
Sbjct: 80 SDEAEYICIAENKAGEQDATIHLKVFAK 107
>pdb|2VRA|A Chain A, Drosophila Robo Ig1-2 (Monoclinic Form)
pdb|2VRA|B Chain B, Drosophila Robo Ig1-2 (Monoclinic Form)
pdb|2VRA|C Chain C, Drosophila Robo Ig1-2 (Monoclinic Form)
pdb|2VRA|D Chain D, Drosophila Robo Ig1-2 (Monoclinic Form)
Length = 208
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 38/121 (31%), Positives = 57/121 (47%), Gaps = 15/121 (12%)
Query: 237 RLSSVTIKQLSIDELACEPQITPSTFYLEIQEGKNVSLLCKV-SAIPEAKITWLFDGVPI 295
R +S+ I L D+ EP+ T + +G+ L C IPE + W+ DGVP+
Sbjct: 98 RHASLQIAVLR-DDFRVEPKDT------RVAKGETALLECGPPKGIPEPTLIWIKDGVPL 150
Query: 296 QN-ESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCVAENQAGSTSSNYTIRI 354
+ ++MS S V + G LLI N D G + C+A+N G+ S+Y I
Sbjct: 151 DDLKAMSFGASSRVRIVDGGN------LLISNVEPIDEGNYKCIAQNLVGTRESSYAKLI 204
Query: 355 V 355
V
Sbjct: 205 V 205
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 31/114 (27%), Positives = 52/114 (45%), Gaps = 15/114 (13%)
Query: 255 PQITPSTFYLEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEG 314
P+I L +++ + +L CKV PE I W DG P+ S + +SH V
Sbjct: 10 PRIIEHPTDLVVKKNEPATLNCKVEGKPEPTIEWFKDGEPV---STNEKKSHRV------ 60
Query: 315 TEIKKSELLIYNS----NIDDNGTFVCVAENQAGSTSSNY-TIRIVLKEENVEV 363
+ K L Y + D G + CVA+N+ G S + +++I + ++ V
Sbjct: 61 -QFKDGALFFYRTMQGKKEQDGGEYWCVAKNRVGQAVSRHASLQIAVLRDDFRV 113
>pdb|2VR9|A Chain A, Drosophila Robo Ig1-2 (Tetragonal Form)
pdb|2VR9|B Chain B, Drosophila Robo Ig1-2 (Tetragonal Form)
pdb|2VR9|C Chain C, Drosophila Robo Ig1-2 (Tetragonal Form)
Length = 217
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 38/121 (31%), Positives = 57/121 (47%), Gaps = 15/121 (12%)
Query: 237 RLSSVTIKQLSIDELACEPQITPSTFYLEIQEGKNVSLLCKV-SAIPEAKITWLFDGVPI 295
R +S+ I L D+ EP+ T + +G+ L C IPE + W+ DGVP+
Sbjct: 98 RHASLQIAVLR-DDFRVEPKDT------RVAKGETALLECGPPKGIPEPTLIWIKDGVPL 150
Query: 296 QN-ESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCVAENQAGSTSSNYTIRI 354
+ ++MS S V + G LLI N D G + C+A+N G+ S+Y I
Sbjct: 151 DDLKAMSFGASSRVRIVDGGN------LLISNVEPIDEGNYKCIAQNLVGTRESSYAKLI 204
Query: 355 V 355
V
Sbjct: 205 V 205
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 31/114 (27%), Positives = 52/114 (45%), Gaps = 15/114 (13%)
Query: 255 PQITPSTFYLEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEG 314
P+I L +++ + +L CKV PE I W DG P+ S + +SH V
Sbjct: 10 PRIIEHPTDLVVKKNEPATLNCKVEGKPEPTIEWFKDGEPV---STNEKKSHRV------ 60
Query: 315 TEIKKSELLIYNS----NIDDNGTFVCVAENQAGSTSSNY-TIRIVLKEENVEV 363
+ K L Y + D G + CVA+N+ G S + +++I + ++ V
Sbjct: 61 -QFKDGALFFYRTMQGKKEQDGGEYWCVAKNRVGQAVSRHASLQIAVLRDDFRV 113
>pdb|2Y25|A Chain A, Crystal Structure Of The Myomesin Domains My11-My13
pdb|2Y25|B Chain B, Crystal Structure Of The Myomesin Domains My11-My13
pdb|2Y25|C Chain C, Crystal Structure Of The Myomesin Domains My11-My13
pdb|2Y25|D Chain D, Crystal Structure Of The Myomesin Domains My11-My13
Length = 317
Score = 46.2 bits (108), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 48/93 (51%), Gaps = 9/93 (9%)
Query: 266 IQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIY 325
IQEGK ++L C V P +++WL +NE AS+ H E G + + I
Sbjct: 234 IQEGKALNLTCNVWGDPPPEVSWL------KNEKALASDDHCNLKFEAG---RTAYFTIN 284
Query: 326 NSNIDDNGTFVCVAENQAGSTSSNYTIRIVLKE 358
+ D+G + V +N+ GS +S++T+ + + E
Sbjct: 285 GVSTADSGKYGLVVKNKYGSETSDFTVSVFIPE 317
>pdb|2KDG|A Chain A, Solution Structure Of The 1st Ig Domain Of Myotilin
Length = 100
Score = 45.8 bits (107), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/95 (25%), Positives = 46/95 (48%), Gaps = 9/95 (9%)
Query: 264 LEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELL 323
+ I EG+ + KVS +P ++W +G +Q++ + H + +E+G L+
Sbjct: 15 MSIDEGRFCRMDFKVSGLPAPDVSWYLNGRTVQSDDL-----HKMIVSEKGLH----SLI 65
Query: 324 IYNSNIDDNGTFVCVAENQAGSTSSNYTIRIVLKE 358
D G + CVA+N+AG + + ++ KE
Sbjct: 66 FEVVRASDAGAYACVAKNRAGEATFTVQLDVLAKE 100
>pdb|3RFE|A Chain A, Crystal Structure Of Glycoprotein Gpib Ectodomain
pdb|3RFE|B Chain B, Crystal Structure Of Glycoprotein Gpib Ectodomain
Length = 130
Score = 43.9 bits (102), Expect = 4e-04, Method: Composition-based stats.
Identities = 31/83 (37%), Positives = 39/83 (46%), Gaps = 14/83 (16%)
Query: 186 ISGSNI--LPTGL-------HGIDLHHNPWTCDCLLIGLRRWL--ESTKTPMAIDPICSV 234
++G+N+ LP GL L NPW CDC L+ LR WL + P D C
Sbjct: 38 LTGNNLTALPPGLLDALPALRTAHLGANPWRCDCRLVPLRAWLAGRPERAPYR-DLRCVA 96
Query: 235 PPRLSSVTIKQLSIDEL--ACEP 255
PP L + L+ DEL AC P
Sbjct: 97 PPALRGRLLPYLAEDELRAACAP 119
>pdb|2R15|A Chain A, Crystal Structure Of The Myomesin Domains 12 And 13
pdb|2R15|B Chain B, Crystal Structure Of The Myomesin Domains 12 And 13
Length = 212
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 46/93 (49%), Gaps = 9/93 (9%)
Query: 266 IQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIY 325
IQEGK ++L C V P +++WL +NE A H E G + + I
Sbjct: 129 IQEGKALNLTCNVWGDPPPEVSWL------KNEKALAQTDHCNLKFEAG---RTAYFTIN 179
Query: 326 NSNIDDNGTFVCVAENQAGSTSSNYTIRIVLKE 358
+ D+G + V +N+ GS +S++T+ + + E
Sbjct: 180 GVSTADSGKYGLVVKNKYGSETSDFTVSVFIPE 212
>pdb|3SB4|A Chain A, Crystal Structure Of A Hypothetical Leucine Rich Repeat
Protein (Bt_1240) From Bacteroides Thetaiotaomicron
Vpi-5482 At 1.99 A Resolution
pdb|3SB4|B Chain B, Crystal Structure Of A Hypothetical Leucine Rich Repeat
Protein (Bt_1240) From Bacteroides Thetaiotaomicron
Vpi-5482 At 1.99 A Resolution
Length = 329
Score = 43.5 bits (101), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 35/98 (35%), Positives = 47/98 (47%), Gaps = 4/98 (4%)
Query: 100 NLVDLDFSHNVLQTVPSDTFPDYPSLMKLTLSGNPIKQIKTGAFQPLSYLV-TLELSKCG 158
NLV LD S T+P TF L+K+ L N +K I F L TLEL
Sbjct: 227 NLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELP-AS 284
Query: 159 IEVIEDAAFVGLDSLEWLKLDNNKITTISGSNILPTGL 196
+ IE AF G D+L ++ +KITT+ G + G+
Sbjct: 285 VTAIEFGAFXGCDNLRYVLATGDKITTL-GDELFGNGV 321
>pdb|3REZ|A Chain A, Glycoprotein Gpib Variant
pdb|3REZ|B Chain B, Glycoprotein Gpib Variant
pdb|3REZ|C Chain C, Glycoprotein Gpib Variant
pdb|3REZ|D Chain D, Glycoprotein Gpib Variant
Length = 129
Score = 43.1 bits (100), Expect = 6e-04, Method: Composition-based stats.
Identities = 33/86 (38%), Positives = 40/86 (46%), Gaps = 8/86 (9%)
Query: 176 LKLDNNKITTI--SGSNILPTGLHGIDLHHNPWTCDCLLIGLRRWLES--TKTPMAIDPI 231
L L N +T++ + LP L L NPW CDC L LR WLE + P D
Sbjct: 35 LVLTGNNLTSVPPGAFDHLPQ-LRTAHLGANPWRCDCSLTYLRLWLEDRPERAPYR-DLR 92
Query: 232 CSVPPRLSSVTIKQLSIDEL--ACEP 255
C PP L + L+ DEL AC P
Sbjct: 93 CVAPPALRGRLLPYLAEDELRAACAP 118
>pdb|2Z81|A Chain A, Crystal Structure Of The Tlr1-tlr2 Heterodimer Induced By
Binding Of A Tri-acylated Lipopeptide
pdb|2Z82|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 43/147 (29%), Positives = 60/147 (40%), Gaps = 34/147 (23%)
Query: 98 LTNLVDLDFSHNVLQTVPSDTFPDYPSLMK-LTLSGNPIKQIKTGAFQPLSYLVTLELSK 156
L NL LD S N +P +P M+ L LS I+ +KT Q L L++S
Sbjct: 386 LKNLTSLDISRNTFHPMPDSC--QWPEKMRFLNLSSTGIRVVKTCIPQTLE---VLDVSN 440
Query: 157 CGIEVIEDAAFVGLDSLEWLKLDNNKITTISGSNILP----------------------- 193
+ D+ + L L+ L + NK+ T+ +++ P
Sbjct: 441 NNL----DSFSLFLPRLQELYISRNKLKTLPDASLFPVLLVMKISRNQLKSVPDGIFDRL 496
Query: 194 TGLHGIDLHHNPWTCDCLLIG-LRRWL 219
T L I LH NPW C C I L RWL
Sbjct: 497 TSLQKIWLHTNPWDCSCPRIDYLSRWL 523
Score = 32.3 bits (72), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 35/78 (44%)
Query: 77 LQKIYLSRCRISVIDSKAFRGLTNLVDLDFSHNVLQTVPSDTFPDYPSLMKLTLSGNPIK 136
++ + LS +I+ I R NL L + + T+ D F SL L LS N +
Sbjct: 28 MKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLS 87
Query: 137 QIKTGAFQPLSYLVTLEL 154
+ + F PLS L L L
Sbjct: 88 SLSSSWFGPLSSLKYLNL 105
>pdb|3A79|A Chain A, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
pdb|3A7B|A Chain A, Crystal Structure Of Tlr2-Streptococcus Pneumoniae
Lipoteichoic Acid Complex
pdb|3A7C|A Chain A, Crystal Structure Of Tlr2-Pe-Dtpa Complex
Length = 580
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 43/147 (29%), Positives = 60/147 (40%), Gaps = 34/147 (23%)
Query: 98 LTNLVDLDFSHNVLQTVPSDTFPDYPSLMK-LTLSGNPIKQIKTGAFQPLSYLVTLELSK 156
L NL LD S N +P +P M+ L LS I+ +KT Q L L++S
Sbjct: 412 LKNLTSLDISRNTFHPMPDSC--QWPEKMRFLNLSSTGIRVVKTCIPQTLE---VLDVSN 466
Query: 157 CGIEVIEDAAFVGLDSLEWLKLDNNKITTISGSNILP----------------------- 193
+ D+ + L L+ L + NK+ T+ +++ P
Sbjct: 467 NNL----DSFSLFLPRLQELYISRNKLKTLPDASLFPVLLVMKIASNQLKSVPDGIFDRL 522
Query: 194 TGLHGIDLHHNPWTCDCLLIG-LRRWL 219
T L I LH NPW C C I L RWL
Sbjct: 523 TSLQKIWLHTNPWDCSCPRIDYLSRWL 549
Score = 32.3 bits (72), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 35/78 (44%)
Query: 77 LQKIYLSRCRISVIDSKAFRGLTNLVDLDFSHNVLQTVPSDTFPDYPSLMKLTLSGNPIK 136
++ + LS +I+ I R NL L + + T+ D F SL L LS N +
Sbjct: 54 MKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLS 113
Query: 137 QIKTGAFQPLSYLVTLEL 154
+ + F PLS L L L
Sbjct: 114 SLSSSWFGPLSSLKYLNL 131
>pdb|2YD2|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human
Receptor Protein Tyrosine Phosphatase Sigma
Length = 214
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 44/92 (47%), Gaps = 13/92 (14%)
Query: 266 IQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIY 325
++ + ++LC S P+ +ITW D +P+ SAS +++ L I
Sbjct: 120 VERTRTATMLCAASGNPDPEITWFKDFLPV---DPSASNGRI-------KQLRSGALQIE 169
Query: 326 NSNIDDNGTFVCVAENQAG---STSSNYTIRI 354
+S D G + CVA N AG S+ +N +R+
Sbjct: 170 SSEETDQGKYECVATNSAGVRYSSPANLYVRV 201
>pdb|2YD9|A Chain A, Crystal Structure Of The N-Terminal Ig1-3 Module Of Human
Receptor Protein Tyrosine Phosphatase Sigma
Length = 304
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/116 (25%), Positives = 55/116 (47%), Gaps = 18/116 (15%)
Query: 266 IQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIY 325
++ + ++LC S P+ +ITW D +P+ SAS +++ L I
Sbjct: 120 VERTRTATMLCAASGNPDPEITWFKDFLPVDP---SASNGRI-------KQLRSGALQIE 169
Query: 326 NSNIDDNGTFVCVAENQAG---STSSNYTIRIVLKEENVE-VVTVFPLEYVLIVSG 377
+S D G + CVA N AG S+ +N +R+ +NV ++ P+ + ++ G
Sbjct: 170 SSEETDQGKYECVATNSAGVRYSSPANLYVRV----QNVAPRFSILPMSHEIMPGG 221
>pdb|2YD4|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of
Chicken Receptor Protein Tyrosine Phosphatase Sigma
Length = 210
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/97 (27%), Positives = 45/97 (46%), Gaps = 17/97 (17%)
Query: 266 IQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEG--TEIKKSELL 323
++ + ++LC S P+ +ITW D +P+ ST G +++ L
Sbjct: 120 VERTRTATMLCAASGNPDPEITWFKDFLPVDP------------STSNGRIKQLRSGGLQ 167
Query: 324 IYNSNIDDNGTFVCVAENQAG---STSSNYTIRIVLK 357
I +S D G + CVA N AG S+ +N +R+ K
Sbjct: 168 IESSEETDQGKYECVASNSAGVRYSSPANLYVRVGTK 204
>pdb|2YD3|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human
Receptor Protein Tyrosine Phosphatase Sigma
Length = 202
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 44/92 (47%), Gaps = 13/92 (14%)
Query: 266 IQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIY 325
++ + ++LC S P+ +ITW D +P+ SAS +++ L I
Sbjct: 120 VERTRTATMLCAASGNPDPEITWFKDFLPV---DPSASNGRI-------KQLRSGALQIE 169
Query: 326 NSNIDDNGTFVCVAENQAG---STSSNYTIRI 354
+S D G + CVA N AG S+ +N +R+
Sbjct: 170 SSEETDQGKYECVATNSAGVRYSSPANLYVRV 201
>pdb|2OMX|A Chain A, Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX
Length = 462
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 63/228 (27%), Positives = 99/228 (43%), Gaps = 24/228 (10%)
Query: 38 KSLITVVEGMDPNTQVLDYTG----NNLK--TLHNEKFQKM----GLVNLQKIYLSRCRI 87
K+L +V+ + N Q+ D T NL TL N + + L NL ++ LS I
Sbjct: 82 KNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTI 141
Query: 88 SVIDSKAFRGLTNLVDLDFSHNVLQTVPSDTFPDYPSLMKLTLSGNPIKQIKTGAFQPLS 147
S D A GLT+L L+FS N Q + +L +L +S N + I L+
Sbjct: 142 S--DISALSGLTSLQQLNFSSN--QVTDLKPLANLTTLERLDISSNKVSDISV-----LA 192
Query: 148 YLVTLELSKCGIEVIEDAAFVG-LDSLEWLKLDNNKITTISGSNILPTGLHGIDLHHNPW 206
L LE I D +G L +L+ L L+ N++ I G+ T L +DL +N
Sbjct: 193 KLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDI-GTLASLTNLTDLDLANNQI 251
Query: 207 TCDCLLIGLRRWLESTKTPMAIDPICSVPPRLSSVTIKQLSIDELACE 254
+ L GL + T+ + + I ++ P + L ++E E
Sbjct: 252 SNLAPLSGLTKL---TELKLGANQISNISPLAGLTALTNLELNENQLE 296
>pdb|3PXH|A Chain A, Tandem Ig Domains Of Tyrosine Phosphatase Lar
Length = 201
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/91 (25%), Positives = 41/91 (45%), Gaps = 13/91 (14%)
Query: 266 IQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIY 325
+++G+ ++LC P+ +I+W D +P+ S +++ L I
Sbjct: 121 VEKGRTATMLCAAGGNPDPEISWFKDFLPV----------DPAASNGRIKQLRSGALQIE 170
Query: 326 NSNIDDNGTFVCVAENQAG---STSSNYTIR 353
+S D G + CVA N AG S +N +R
Sbjct: 171 SSEESDQGKYECVATNSAGTRYSAPANLYVR 201
>pdb|2KKQ|A Chain A, Solution Nmr Structure Of The Ig-Like C2-Type 2 Domain Of
Human Myotilin. Northeast Structural Genomics Target
Hr3158
Length = 116
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 46/93 (49%), Gaps = 8/93 (8%)
Query: 265 EIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLI 324
++ EG +V L C++SAIP K+ W + +Q ++ ++Y G + LLI
Sbjct: 26 KVLEGDSVKLECQISAIPPPKLFWKRNNEMVQFN----TDRISLYQDNTG----RVTLLI 77
Query: 325 YNSNIDDNGTFVCVAENQAGSTSSNYTIRIVLK 357
+ N D G + A N+AG T+ N + + +
Sbjct: 78 KDVNKKDAGWYTVSAVNEAGVTTCNTRLDVTAR 110
>pdb|2LQR|A Chain A, Nmr Structure Of Ig3 Domain Of Palladin
Length = 108
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 47/98 (47%), Gaps = 10/98 (10%)
Query: 263 YLEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSEL 322
+ +I EG V+ C+V+ P+ KI W DG I + S+ + + +GT L
Sbjct: 16 HYKIFEGMPVTFTCRVAGNPKPKIYWFKDGKQISPK----SDHYTIQRDLDGT----CSL 67
Query: 323 LIYNSNIDDNGTFVCVAENQAGSTSSNYTIRIVLKEEN 360
S +DD+G + +A N G S T R++++ N
Sbjct: 68 HTTASTLDDDGNYTIMAANPQGRVSC--TGRLMVQAVN 103
>pdb|2OMY|A Chain A, Crystal Structure Of Inla S192n/hec1 Complex
Length = 461
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 62/228 (27%), Positives = 99/228 (43%), Gaps = 25/228 (10%)
Query: 38 KSLITVVEGMDPNTQVLDYTG----NNLK--TLHNEKFQKM----GLVNLQKIYLSRCRI 87
K+L +V+ + N Q+ D T NL TL N + + L NL ++ LS I
Sbjct: 82 KNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTI 141
Query: 88 SVIDSKAFRGLTNLVDLDFSHNVLQTVPSDTFPDYPSLMKLTLSGNPIKQIKTGAFQPLS 147
S D A GLT+L L+F + V P + +L +L +S N + I L+
Sbjct: 142 S--DISALSGLTSLQQLNFGNQVTDLKP---LANLTTLERLDISSNKVSDISV-----LA 191
Query: 148 YLVTLELSKCGIEVIEDAAFVG-LDSLEWLKLDNNKITTISGSNILPTGLHGIDLHHNPW 206
L LE I D +G L +L+ L L+ N++ I G+ T L +DL +N
Sbjct: 192 KLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDI-GTLASLTNLTDLDLANNQI 250
Query: 207 TCDCLLIGLRRWLESTKTPMAIDPICSVPPRLSSVTIKQLSIDELACE 254
+ L GL + T+ + + I ++ P + L ++E E
Sbjct: 251 SNLAPLSGLTKL---TELKLGANQISNISPLAGLTALTNLELNENQLE 295
>pdb|2OMV|A Chain A, Crystal Structure Of Inla S192n Y369s/hec1 Complex
pdb|2OMW|A Chain A, Crystal Structure Of Inla S192n Y369s/mec1 Complex
Length = 461
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 62/228 (27%), Positives = 99/228 (43%), Gaps = 25/228 (10%)
Query: 38 KSLITVVEGMDPNTQVLDYTG----NNLK--TLHNEKFQKM----GLVNLQKIYLSRCRI 87
K+L +V+ + N Q+ D T NL TL N + + L NL ++ LS I
Sbjct: 82 KNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTI 141
Query: 88 SVIDSKAFRGLTNLVDLDFSHNVLQTVPSDTFPDYPSLMKLTLSGNPIKQIKTGAFQPLS 147
S D A GLT+L L+F + V P + +L +L +S N + I L+
Sbjct: 142 S--DISALSGLTSLQQLNFGNQVTDLKP---LANLTTLERLDISSNKVSDISV-----LA 191
Query: 148 YLVTLELSKCGIEVIEDAAFVG-LDSLEWLKLDNNKITTISGSNILPTGLHGIDLHHNPW 206
L LE I D +G L +L+ L L+ N++ I G+ T L +DL +N
Sbjct: 192 KLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDI-GTLASLTNLTDLDLANNQI 250
Query: 207 TCDCLLIGLRRWLESTKTPMAIDPICSVPPRLSSVTIKQLSIDELACE 254
+ L GL + T+ + + I ++ P + L ++E E
Sbjct: 251 SNLAPLSGLTKL---TELKLGANQISNISPLAGLTALTNLELNENQLE 295
>pdb|2DM2|A Chain A, Solution Structure Of The First Ig Domain Of Human
Palladin
Length = 110
Score = 39.7 bits (91), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 47/98 (47%), Gaps = 10/98 (10%)
Query: 263 YLEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSEL 322
+ +I EG V+ C+V+ P+ KI W DG I + S+ + + +GT L
Sbjct: 17 HYKIFEGMPVTFTCRVAGNPKPKIYWFKDGKQISPK----SDHYTIQRDLDGT----CSL 68
Query: 323 LIYNSNIDDNGTFVCVAENQAGSTSSNYTIRIVLKEEN 360
S +DD+G + +A N G S T R++++ N
Sbjct: 69 HTTASTLDDDGNYTIMAANPQGRISC--TGRLMVQAVN 104
>pdb|2YD5|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human
Receptor Protein Tyrosine Phosphatase Lar
pdb|2YD8|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human
Receptor Protein Tyrosine Phosphatase Lar In Complex
With Sucrose Octasulphate
Length = 214
Score = 39.3 bits (90), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 22/92 (23%), Positives = 41/92 (44%), Gaps = 13/92 (14%)
Query: 266 IQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIY 325
+++ + ++LC P+ +I+W D +P+ S +++ L I
Sbjct: 120 VEKARTATMLCAAGGNPDPEISWFKDFLPV----------DPATSNGRIKQLRSGALQIE 169
Query: 326 NSNIDDNGTFVCVAENQAG---STSSNYTIRI 354
+S D G + CVA N AG S +N +R+
Sbjct: 170 SSEESDQGKYECVATNSAGTRYSAPANLYVRV 201
Score = 29.6 bits (65), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 17/91 (18%), Positives = 40/91 (43%), Gaps = 8/91 (8%)
Query: 269 GKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSN 328
G S +C+ + P+ +ITW+ G + ++ E + G+ ++ L +
Sbjct: 21 GGVASFVCQATGEPKPRITWMKKGKKVSSQRFEVIE----FDDGAGSVLRIQPLRVQR-- 74
Query: 329 IDDNGTFVCVAENQAGSTSSNYTIRIVLKEE 359
D + C A N G +++ + ++ +E+
Sbjct: 75 --DEAIYECTATNSLGEINTSAKLSVLEEEQ 103
>pdb|2EYR|A Chain A, A Structural Basis For Selection And Cross-species
Reactivity Of The Semi-invariant Nkt Cell Receptor In
Cd1d/glycolipid Recognition
pdb|2EYS|A Chain A, A Structural Basis For Selection And Cross-Species
Reactivity Of The Semi-Invariant Nkt Cell Receptor In
Cd1dGLYCOLIPID RECOGNITION
pdb|2EYT|A Chain A, A Structural Basis For Selection And Cross-Species
Reactivity Of The Semi-Invariant Nkt Cell Receptor In
Cd1dGLYCOLIPID RECOGNITION
pdb|2EYT|C Chain C, A Structural Basis For Selection And Cross-Species
Reactivity Of The Semi-Invariant Nkt Cell Receptor In
Cd1dGLYCOLIPID RECOGNITION
Length = 210
Score = 38.9 bits (89), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 47/97 (48%), Gaps = 7/97 (7%)
Query: 256 QITPSTFYLEIQEGKNVSLLCKVSAIPEAKITWLFDGV---PIQNESMSASE---SHAVY 309
Q+ S L I EGKN +L C + P + + W P+ M+ SE S+ Y
Sbjct: 5 QVEQSPQSLIILEGKNCTLQCNYTVSPFSNLRWYKQDTGRGPVSLTIMTFSENTKSNGRY 64
Query: 310 STEEGTEIKKSELLIYNSNIDDNGTFVCVAENQAGST 346
+ + K+S L I S + D+ +++CV ++ GST
Sbjct: 65 TATLDADTKQSSLHITASQLSDSASYICVVSDR-GST 100
>pdb|2PO6|C Chain C, Crystal Structure Of Cd1d-lipid-antigen Complexed With
Beta-2- Microglobulin, Nkt15 Alpha-chain And Nkt15
Beta-chain
pdb|2PO6|G Chain G, Crystal Structure Of Cd1d-lipid-antigen Complexed With
Beta-2- Microglobulin, Nkt15 Alpha-chain And Nkt15
Beta-chain
pdb|3SDX|E Chain E, Crystal Structure Of Human Autoreactive-Valpha24 Nkt Tcr
In Complex With Cd1d-Beta-Galactosylceramide
pdb|3SDX|G Chain G, Crystal Structure Of Human Autoreactive-Valpha24 Nkt Tcr
In Complex With Cd1d-Beta-Galactosylceramide
Length = 204
Score = 38.9 bits (89), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 47/97 (48%), Gaps = 7/97 (7%)
Query: 256 QITPSTFYLEIQEGKNVSLLCKVSAIPEAKITWLFDGV---PIQNESMSASE---SHAVY 309
Q+ S L I EGKN +L C + P + + W P+ M+ SE S+ Y
Sbjct: 2 QVEQSPQSLIILEGKNCTLQCNYTVSPFSNLRWYKQDTGRGPVSLTIMTFSENTKSNGRY 61
Query: 310 STEEGTEIKKSELLIYNSNIDDNGTFVCVAENQAGST 346
+ + K+S L I S + D+ +++CV ++ GST
Sbjct: 62 TATLDADTKQSSLHITASQLSDSASYICVVSDR-GST 97
>pdb|3HUJ|E Chain E, Crystal Structure Of Human Cd1d-Alpha-Galactosylceramide
In Complex With Semi-Invariant Nkt Cell Receptor
pdb|3HUJ|G Chain G, Crystal Structure Of Human Cd1d-Alpha-Galactosylceramide
In Complex With Semi-Invariant Nkt Cell Receptor
pdb|3VWJ|C Chain C, Ternary Crystal Structure Of The Human Nkt Tcr-Cd1d-C20:2
Complex
pdb|3VWK|C Chain C, Ternary Crystal Structure Of The Human Nkt
Tcr-Cd1d-4'deoxy-Alpha- Galactosylceramide Complex
Length = 209
Score = 38.9 bits (89), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 47/97 (48%), Gaps = 7/97 (7%)
Query: 256 QITPSTFYLEIQEGKNVSLLCKVSAIPEAKITWLFDGV---PIQNESMSASE---SHAVY 309
Q+ S L I EGKN +L C + P + + W P+ M+ SE S+ Y
Sbjct: 4 QVEQSPQSLIILEGKNCTLQCNYTVSPFSNLRWYKQDTGRGPVSLTIMTFSENTKSNGRY 63
Query: 310 STEEGTEIKKSELLIYNSNIDDNGTFVCVAENQAGST 346
+ + K+S L I S + D+ +++CV ++ GST
Sbjct: 64 TATLDADTKQSSLHITASQLSDSASYICVVSDR-GST 99
>pdb|2CDE|A Chain A, Structure And Binding Kinetics Of Three Different Human
Cd1d-Alpha-Galactosylceramide Specific T Cell Receptors
- Inkt-Tcr
pdb|2CDE|C Chain C, Structure And Binding Kinetics Of Three Different Human
Cd1d-Alpha-Galactosylceramide Specific T Cell Receptors
- Inkt-Tcr
pdb|2CDE|E Chain E, Structure And Binding Kinetics Of Three Different Human
Cd1d-Alpha-Galactosylceramide Specific T Cell Receptors
- Inkt-Tcr
Length = 192
Score = 38.9 bits (89), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 47/97 (48%), Gaps = 7/97 (7%)
Query: 256 QITPSTFYLEIQEGKNVSLLCKVSAIPEAKITWLFDGV---PIQNESMSASE---SHAVY 309
Q+ S L I EGKN +L C + P + + W P+ M+ SE S+ Y
Sbjct: 2 QVEQSPQSLIILEGKNCTLQCNYTVSPFSNLRWYKQDTGRGPVSLTIMTFSENTKSNGRY 61
Query: 310 STEEGTEIKKSELLIYNSNIDDNGTFVCVAENQAGST 346
+ + K+S L I S + D+ +++CV ++ GST
Sbjct: 62 TATLDADTKQSSLHITASQLSDSASYICVVSDR-GST 97
>pdb|3TYF|A Chain A, Crystal Structure Of A Cd1d-Lysophosphatidylcholine
Reactive Inkt Tcr
pdb|3TYF|C Chain C, Crystal Structure Of A Cd1d-Lysophosphatidylcholine
Reactive Inkt Tcr
pdb|3TZV|A Chain A, Crystal Structure Of An Inkt Tcr In Complex With Cd1d-
Lysophosphatidylcholine
pdb|3TZV|G Chain G, Crystal Structure Of An Inkt Tcr In Complex With Cd1d-
Lysophosphatidylcholine
Length = 213
Score = 38.9 bits (89), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 47/97 (48%), Gaps = 7/97 (7%)
Query: 256 QITPSTFYLEIQEGKNVSLLCKVSAIPEAKITWLFDGV---PIQNESMSASE---SHAVY 309
Q+ S L I EGKN +L C + P + + W P+ M+ SE S+ Y
Sbjct: 5 QVEQSPQSLIILEGKNCTLQCNYTVSPFSNLRWYKQDTGRGPVSLTIMTFSENTKSNGRY 64
Query: 310 STEEGTEIKKSELLIYNSNIDDNGTFVCVAENQAGST 346
+ + K+S L I S + D+ +++CV ++ GST
Sbjct: 65 TATLDADTKQSSLHITASQLSDSASYICVVSDR-GST 100
>pdb|3LAF|A Chain A, Structure Of Dcc, A Netrin-1 Receptor
Length = 403
Score = 38.5 bits (88), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 32/89 (35%), Positives = 40/89 (44%), Gaps = 14/89 (15%)
Query: 268 EGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNS 327
EGK+ L C VS P TWL IQ S YS G S LLI N
Sbjct: 235 EGKDAVLECCVSGYPPPSFTWLRGEEVIQLRSKK-------YSLLGG-----SNLLISNV 282
Query: 328 NIDDNGTFVCVA--ENQAGSTSSNYTIRI 354
DD+GT+ CV +N+ S S+ T+ +
Sbjct: 283 TDDDSGTYTCVVTYKNENISASAELTVLV 311
Score = 32.3 bits (72), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 36/91 (39%), Gaps = 15/91 (16%)
Query: 259 PSTFYLEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIK 318
PS Y E ++ C VS P + W+ +G V ++ +
Sbjct: 319 PSNLY--AYESMDIEFECAVSGKPVPTVNWMKNG-------------DVVIPSDYFQIVG 363
Query: 319 KSELLIYNSNIDDNGTFVCVAENQAGSTSSN 349
S L I D G + CVAEN+AG+ S+
Sbjct: 364 GSNLRILGVVKSDEGFYQCVAENEAGNAQSS 394
>pdb|1CS6|A Chain A, N-terminal Fragment Of Axonin-1 From Chicken
Length = 382
Score = 38.5 bits (88), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 44/86 (51%), Gaps = 14/86 (16%)
Query: 269 GKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSN 328
G ++ C S P + WL DG P+ AS++ S G E++ S+L++
Sbjct: 309 GSDLRWSCVASGKPRPAVRWLRDGQPL------ASQNRIEVS---GGELRFSKLVL---- 355
Query: 329 IDDNGTFVCVAENQAGSTSSNYTIRI 354
+D+G + CVAEN+ G+ ++ + +
Sbjct: 356 -EDSGMYQCVAENKHGTVYASAELTV 380
>pdb|2RJM|A Chain A, 3ig Structure Of Titin Domains I67-I69 E-To-A Mutated
Variant
Length = 284
Score = 38.5 bits (88), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 47/92 (51%), Gaps = 16/92 (17%)
Query: 266 IQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNES---MSASESHAVYSTEEGTEIKKSEL 322
+++ ++ CK+ PE K+ W D IQ S MS ES AV L
Sbjct: 111 VKQDEHTRYECKIGGSPEIKVLWYKDETEIQESSKFRMSFVESVAV-------------L 157
Query: 323 LIYNSNIDDNGTFVCVAENQAGSTSSNYTIRI 354
+YN +++D+G + C A N AGS SS+ ++++
Sbjct: 158 EMYNLSVEDSGDYTCEAHNAAGSASSSTSLKV 189
>pdb|2RIK|A Chain A, I-Band Fragment I67-I69 From Titin
Length = 284
Score = 38.1 bits (87), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 47/92 (51%), Gaps = 16/92 (17%)
Query: 266 IQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNES---MSASESHAVYSTEEGTEIKKSEL 322
+++ ++ CK+ PE K+ W D IQ S MS ES AV L
Sbjct: 111 VKQDEHTRYECKIGGSPEIKVLWYKDETEIQESSKFRMSFVESVAV-------------L 157
Query: 323 LIYNSNIDDNGTFVCVAENQAGSTSSNYTIRI 354
+YN +++D+G + C A N AGS SS+ ++++
Sbjct: 158 EMYNLSVEDSGDYTCEAHNAAGSASSSTSLKV 189
>pdb|3B43|A Chain A, I-band Fragment I65-i70 From Titin
Length = 570
Score = 37.7 bits (86), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 47/92 (51%), Gaps = 16/92 (17%)
Query: 266 IQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNES---MSASESHAVYSTEEGTEIKKSEL 322
+++ ++ CK+ PE K+ W D IQ S MS ES AV L
Sbjct: 303 VKQDEHTRYECKIGGSPEIKVLWYKDETEIQESSKFRMSFVESVAV-------------L 349
Query: 323 LIYNSNIDDNGTFVCVAENQAGSTSSNYTIRI 354
+YN +++D+G + C A N AGS SS+ ++++
Sbjct: 350 EMYNLSVEDSGDYTCEAHNAAGSASSSTSLKV 381
Score = 36.2 bits (82), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 25/99 (25%), Positives = 46/99 (46%), Gaps = 12/99 (12%)
Query: 263 YLEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSEL 322
++E G+ ++L CKV PE +I W + ++ S Y + + + L
Sbjct: 14 HVEAAIGEPITLQCKVDGTPEIRIAWYKEHTKLR--------SAPAYKMQFKNNV--ASL 63
Query: 323 LIYNSNIDDNGTFVCVAENQAGSTSSNYTIRIVLKEENV 361
+I + D G + C AEN G+ +S+ +V+KE +
Sbjct: 64 VINKVDHSDVGEYTCKAENSVGAVASSAV--LVIKERKL 100
>pdb|2YD6|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human
Receptor Protein Tyrosine Phosphatase Delta
pdb|2YD7|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human
Receptor Protein Tyrosine Phosphatase Delta
pdb|2YD7|B Chain B, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human
Receptor Protein Tyrosine Phosphatase Delta
Length = 212
Score = 37.4 bits (85), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 38/83 (45%), Gaps = 7/83 (8%)
Query: 266 IQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIY 325
++ + ++LC S P+ +ITW D +P+ + + + +I++SE
Sbjct: 120 VERTRTATMLCAASGNPDPEITWFKDFLPVDTSNNNGRIKQLRSESIGALQIEQSEE--- 176
Query: 326 NSNIDDNGTFVCVAENQAGSTSS 348
D G + CVA N AG+ S
Sbjct: 177 ----SDQGKYECVATNSAGTRYS 195
Score = 29.6 bits (65), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 22/93 (23%), Positives = 37/93 (39%), Gaps = 9/93 (9%)
Query: 269 GKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSN 328
G S +C+ + P KI W G + N+ E + G+ ++ L
Sbjct: 21 GGVASFICQATGDPRPKIVWNKKGKKVSNQRFEVIE----FDDGSGSVLRIQPLRTPR-- 74
Query: 329 IDDNGTFVCVAENQAGSTSSNYTIRIVLKEENV 361
D + CVA N G S + + VL+E+ +
Sbjct: 75 --DEAIYECVASNNVGEISVSTRL-TVLREDQI 104
>pdb|1E07|A Chain A, Model Of Human Carcinoembryonic Antigen By Homology
Modelling And Curve-Fitting To Experimental Solution
Scattering Data
Length = 642
Score = 37.4 bits (85), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 29/106 (27%), Positives = 45/106 (42%), Gaps = 23/106 (21%)
Query: 254 EPQITPSTFYLEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEE 313
+P I+PS Y + G N+SL C ++ P A+ +WL DG + ++
Sbjct: 383 DPTISPS--YTYYRPGVNLSLSCHAASNPPAQYSWLIDG-----------------NIQQ 423
Query: 314 GTEIKKSELLIYNSNIDDNGTFVCVAENQAGSTSSNYTIRIVLKEE 359
T+ EL I N ++G + C A N A S I + E
Sbjct: 424 HTQ----ELFISNITEKNSGLYTCQANNSASGHSRTTVKTITVSAE 465
Score = 31.6 bits (70), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 20/87 (22%), Positives = 40/87 (45%), Gaps = 23/87 (26%)
Query: 255 PQITPSTFYLEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEG 314
P I+P + G+N++L C ++ P A+ +W +G + ++
Sbjct: 206 PTISP--LNTSYRSGENLNLSCHAASNPPAQYSWFVNG-----------------TFQQS 246
Query: 315 TEIKKSELLIYNSNIDDNGTFVCVAEN 341
T+ EL I N ++++G++ C A N
Sbjct: 247 TQ----ELFIPNITVNNSGSYTCQAHN 269
Score = 30.4 bits (67), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 20/85 (23%), Positives = 34/85 (40%), Gaps = 24/85 (28%)
Query: 259 PSTFYLEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIK 318
P + YL G N++L C ++ P + +W +G+P Q+ +
Sbjct: 567 PDSSYLS---GANLNLSCHSASNPSPQYSWRINGIPQQHTQV------------------ 605
Query: 319 KSELLIYNSNIDDNGTFVCVAENQA 343
L I ++NGT+ C N A
Sbjct: 606 ---LFIAKITPNNNGTYACFVSNLA 627
>pdb|2YD1|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of
Drosophila Receptor Protein Tyrosine Phosphatase Dlar
Length = 212
Score = 37.4 bits (85), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 33/99 (33%), Positives = 45/99 (45%), Gaps = 17/99 (17%)
Query: 255 PQIT--PSTFYLEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTE 312
P IT P T +E+ G V + CK P I W I+N++ S+ YS +
Sbjct: 111 PVITQGPGTRVIEV--GHTVLMTCKAIGNPTPNIYW------IKNQT-KVDMSNPRYSLK 161
Query: 313 EGTEIKKSELLIYNSNIDDNGTFVCVAENQAGSTSSNYT 351
+G L I NS +D G + CVAEN G+ S T
Sbjct: 162 DGF------LQIENSREEDQGKYECVAENSMGTEHSKAT 194
>pdb|3PXJ|A Chain A, Tandem Ig Repeats Of Dlar
pdb|3PXJ|B Chain B, Tandem Ig Repeats Of Dlar
pdb|3PXJ|C Chain C, Tandem Ig Repeats Of Dlar
pdb|3PXJ|D Chain D, Tandem Ig Repeats Of Dlar
Length = 210
Score = 37.4 bits (85), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 33/99 (33%), Positives = 45/99 (45%), Gaps = 17/99 (17%)
Query: 255 PQIT--PSTFYLEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTE 312
P IT P T +E+ G V + CK P I W I+N++ S+ YS +
Sbjct: 113 PVITQGPGTRVIEV--GHTVLMTCKAIGNPTPNIYW------IKNQT-KVDMSNPRYSLK 163
Query: 313 EGTEIKKSELLIYNSNIDDNGTFVCVAENQAGSTSSNYT 351
+G L I NS +D G + CVAEN G+ S T
Sbjct: 164 DGF------LQIENSREEDQGKYECVAENSMGTEHSKAT 196
>pdb|2XY1|A Chain A, Crystal Structure Of Ncam2 Ig3-4
Length = 192
Score = 37.0 bits (84), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 22/97 (22%), Positives = 44/97 (45%), Gaps = 12/97 (12%)
Query: 261 TFYLEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKS 320
+F + G+ ++ C+ S PE I+W +G I+ +E + + + +
Sbjct: 11 SFNATAERGEEMTFSCRASGSPEPAISWFRNGKLIEE-----NEKYILKGS-------NT 58
Query: 321 ELLIYNSNIDDNGTFVCVAENQAGSTSSNYTIRIVLK 357
EL + N D G +VC A N+AG +++ ++
Sbjct: 59 ELTVRNIINSDGGPYVCRATNKAGEDEKQAFLQVFVQ 95
>pdb|3QP3|A Chain A, Crystal Structure Of Titin Domain M4, Tetragonal Form
pdb|3QP3|B Chain B, Crystal Structure Of Titin Domain M4, Tetragonal Form
pdb|3QP3|C Chain C, Crystal Structure Of Titin Domain M4, Tetragonal Form
Length = 103
Score = 37.0 bits (84), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 26/101 (25%), Positives = 44/101 (43%), Gaps = 10/101 (9%)
Query: 255 PQITPSTFYLEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEG 314
P+IT + G+N + V + P A++ W +GV +Q ES ++ T
Sbjct: 9 PRITLRMRSHRVPCGQNTRFILNVQSKPTAEVKWYHNGVELQ-------ESSKIHYTNTS 61
Query: 315 TEIKKSELLIYNSNIDDNGTFVCVAENQAGSTSSNYTIRIV 355
+ L I + + DD+GT+ V N G S T+ +
Sbjct: 62 GVLT---LEILDCHTDDSGTYRAVCTNYKGEASDYATLDVT 99
>pdb|2OM5|A Chain A, N-Terminal Fragment Of Human Tax1
Length = 381
Score = 37.0 bits (84), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 18/86 (20%), Positives = 39/86 (45%), Gaps = 14/86 (16%)
Query: 269 GKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSN 328
G N+ C + P + WL +G P+ +++ E+ +L +
Sbjct: 308 GSNLRWGCAAAGKPRPTVRWLRNGEPL--------------ASQNRVEVLAGDLRFSKLS 353
Query: 329 IDDNGTFVCVAENQAGSTSSNYTIRI 354
++D+G + CVAEN+ G+ ++ + +
Sbjct: 354 LEDSGMYQCVAENKHGTIYASAELAV 379
>pdb|1FHG|A Chain A, High Resolution Refinement Of Telokin
Length = 154
Score = 36.6 bits (83), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 24/94 (25%), Positives = 37/94 (39%), Gaps = 9/94 (9%)
Query: 254 EPQITPSTFYLEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEE 313
+P T + +E+ EG CKV P+ ++ W D P++ S + EE
Sbjct: 41 KPYFTKTILDMEVVEGSAARFDCKVEGYPDPEVMWFKDDNPVKE-----SRHFQIDYDEE 95
Query: 314 GTEIKKSELLIYNSNIDDNGTFVCVAENQAGSTS 347
G L I DD+ + C A N G +
Sbjct: 96 GN----CSLTISEVCGDDDAKYTCKAVNSLGEAT 125
>pdb|2EC8|A Chain A, Crystal Structure Of The Exctracellular Domain Of The
Receptor Tyrosine Kinase, Kit
Length = 524
Score = 36.6 bits (83), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 25/116 (21%), Positives = 55/116 (47%), Gaps = 10/116 (8%)
Query: 255 PQITPSTFYLEIQEGKNVSLLCKVSAIPEAKI-TWLFDGVPIQNESMSASESHAVYSTEE 313
P ++ S ++EG+ ++ C + + + TW + + + S H ++ E
Sbjct: 212 PVVSVSKASYLLREGEEFTVTCTIKDVSSSVYSTWKRENSQTKLQEKYNSWHHGDFNYE- 270
Query: 314 GTEIKKSELLIYNSNIDDNGTFVCVAENQAGSTSSNYTIRIVLKEENVEVVTVFPL 369
+++ L I ++ ++D+G F+C A N GS + T+ +V K + +FP+
Sbjct: 271 ----RQATLTISSARVNDSGVFMCYANNTFGSANVTTTLEVVDK----GFINIFPM 318
>pdb|2E9W|A Chain A, Crystal Structure Of The Extracellular Domain Of Kit In
Complex With Stem Cell Factor (Scf)
pdb|2E9W|B Chain B, Crystal Structure Of The Extracellular Domain Of Kit In
Complex With Stem Cell Factor (Scf)
Length = 489
Score = 36.6 bits (83), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 25/116 (21%), Positives = 55/116 (47%), Gaps = 10/116 (8%)
Query: 255 PQITPSTFYLEIQEGKNVSLLCKVSAIPEAKI-TWLFDGVPIQNESMSASESHAVYSTEE 313
P ++ S ++EG+ ++ C + + + TW + + + S H ++ E
Sbjct: 187 PVVSVSKASYLLREGEEFTVTCTIKDVSSSVYSTWKRENSQTKLQEKYNSWHHGDFNYE- 245
Query: 314 GTEIKKSELLIYNSNIDDNGTFVCVAENQAGSTSSNYTIRIVLKEENVEVVTVFPL 369
+++ L I ++ ++D+G F+C A N GS + T+ +V K + +FP+
Sbjct: 246 ----RQATLTISSARVNDSGVFMCYANNTFGSANVTTTLEVVDK----GFINIFPM 293
>pdb|2V5T|A Chain A, Crystal Structure Of Ncam2 Ig2-3
Length = 189
Score = 36.6 bits (83), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 22/97 (22%), Positives = 44/97 (45%), Gaps = 12/97 (12%)
Query: 261 TFYLEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKS 320
+F + G+ ++ C+ S PE I+W +G I+ +E + + + +
Sbjct: 105 SFNATAERGEEMTFSCRASGSPEPAISWFRNGKLIEE-----NEKYILKGS-------NT 152
Query: 321 ELLIYNSNIDDNGTFVCVAENQAGSTSSNYTIRIVLK 357
EL + N D G +VC A N+AG +++ ++
Sbjct: 153 ELTVRNIINSDGGPYVCRATNKAGEDEKQAFLQVFVQ 189
Score = 29.3 bits (64), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 8/26 (30%), Positives = 19/26 (73%)
Query: 265 EIQEGKNVSLLCKVSAIPEAKITWLF 290
E ++G++ ++C+VS+ P ++WL+
Sbjct: 13 EFKQGEDAEVVCRVSSSPAPAVSWLY 38
>pdb|2XY2|A Chain A, Crystal Structure Of Ncam2 Ig1-2
Length = 189
Score = 36.6 bits (83), Expect = 0.056, Method: Composition-based stats.
Identities = 35/117 (29%), Positives = 55/117 (47%), Gaps = 13/117 (11%)
Query: 256 QITPSTFYLEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGT 315
Q+T S +E+ G++ C PE+ I W Q E + +++ V +EG
Sbjct: 4 QVTISLSKVELSVGESKFFTCTAIGEPES-IDWYNP----QGEKIISTQR--VVVQKEGV 56
Query: 316 EIKKSELLIYNSNIDDNGTFVCVAENQAGSTS-SNYTIRIVLKEENVEVVTVFPLEY 371
+S L IYN+NI+D G + C A + G T + + I K EVV+ P E+
Sbjct: 57 ---RSRLTIYNANIEDAGIYRCQATDAKGQTQEATVVLEIYQKLTFREVVS--PQEF 108
Score = 29.3 bits (64), Expect = 8.1, Method: Composition-based stats.
Identities = 8/26 (30%), Positives = 19/26 (73%)
Query: 265 EIQEGKNVSLLCKVSAIPEAKITWLF 290
E ++G++ ++C+VS+ P ++WL+
Sbjct: 107 EFKQGEDAEVVCRVSSSPAPAVSWLY 132
>pdb|1TNM|A Chain A, Tertiary Structure Of An Immunoglobulin-Like Domain From
The Muscle Protein Titin: A New Member Of The I Set
pdb|1TNN|A Chain A, Tertiary Structure Of An Immunoglobulin-Like Domain From
The Muscle Protein Titin: A New Member Of The I Set
Length = 100
Score = 36.2 bits (82), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 38/91 (41%), Gaps = 10/91 (10%)
Query: 264 LEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELL 323
+ + EG++ C P +TWL G + +S S H V +T+ KS
Sbjct: 18 MTVYEGESARFSCDTDGEPVPTVTWLRKG-----QVLSTSARHQVTTTK-----YKSTFE 67
Query: 324 IYNSNIDDNGTFVCVAENQAGSTSSNYTIRI 354
I + D G + V EN G + +T+ I
Sbjct: 68 ISSVQASDEGNYSVVVENSEGKQEAEFTLTI 98
>pdb|1NCT|A Chain A, Titin Module M5, N-Terminally Extended, Nmr
pdb|1NCU|A Chain A, Titin Module M5, N-Terminally Extended, Nmr
Length = 106
Score = 35.8 bits (81), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 38/91 (41%), Gaps = 10/91 (10%)
Query: 264 LEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELL 323
+ + EG++ C P +TWL G + +S S H V +T+ KS
Sbjct: 24 MTVYEGESARFSCDTDGEPVPTVTWLRKG-----QVLSTSARHQVTTTK-----YKSTFE 73
Query: 324 IYNSNIDDNGTFVCVAENQAGSTSSNYTIRI 354
I + D G + V EN G + +T+ I
Sbjct: 74 ISSVQASDEGNYSVVVENSEGKQEAEFTLTI 104
>pdb|2WIM|A Chain A, Crystal Structure Of Ncam2 Ig1-3
pdb|2WIM|B Chain B, Crystal Structure Of Ncam2 Ig1-3
Length = 291
Score = 35.8 bits (81), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 24/98 (24%), Positives = 43/98 (43%), Gaps = 14/98 (14%)
Query: 261 TFYLEIQEGKNVSLLCKVSAIPEAKITWLFDGVPI-QNESMSASESHAVYSTEEGTEIKK 319
+F + G+ ++ C+ S PE I+W +G I +NE S+
Sbjct: 201 SFNATAERGEEMTFSCRASGSPEPAISWFRNGKLIEENEKYILKGSN------------- 247
Query: 320 SELLIYNSNIDDNGTFVCVAENQAGSTSSNYTIRIVLK 357
+EL + N D G +VC A N+AG +++ ++
Sbjct: 248 TELTVRNIINSDGGPYVCRATNKAGEDEKQAFLQVFVQ 285
Score = 34.7 bits (78), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 44/91 (48%), Gaps = 10/91 (10%)
Query: 256 QITPSTFYLEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGT 315
Q+T S +E+ G++ C PE+ I W Q E + +++ V +EG
Sbjct: 6 QVTISLSKVELSVGESKFFTCTAIGEPES-IDWYNP----QGEKIISTQRVVV--QKEGV 58
Query: 316 EIKKSELLIYNSNIDDNGTFVCVAENQAGST 346
+S L IYN+NI+D G + C A + G T
Sbjct: 59 ---RSRLTIYNANIEDAGIYRCQATDAKGQT 86
>pdb|2VAJ|A Chain A, Crystal Structure Of Ncam2 Ig1 (I4122 Cell Unit)
Length = 93
Score = 35.8 bits (81), Expect = 0.099, Method: Composition-based stats.
Identities = 28/91 (30%), Positives = 44/91 (48%), Gaps = 10/91 (10%)
Query: 256 QITPSTFYLEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGT 315
Q+T S +E+ G++ C PE+ I W Q E + +++ V +EG
Sbjct: 2 QVTISLSKVELSVGESKFFTCTAIGEPES-IDWYNP----QGEKIISTQR--VVVQKEGV 54
Query: 316 EIKKSELLIYNSNIDDNGTFVCVAENQAGST 346
+S L IYN+NI+D G + C A + G T
Sbjct: 55 ---RSRLTIYNANIEDAGIYRCQATDAKGQT 82
>pdb|1TLK|A Chain A, X-Ray Structure Determination Of Telokin, The C-Terminal
Domain Of Myosin Light Chain Kinase, At 2.8 Angstroms
Resolution
Length = 154
Score = 35.4 bits (80), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 23/94 (24%), Positives = 37/94 (39%), Gaps = 9/94 (9%)
Query: 254 EPQITPSTFYLEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEE 313
+P T + +++ EG CKV P+ ++ W D P++ S + EE
Sbjct: 41 KPYFTKTILDMDVVEGSAARFDCKVEGYPDPEVMWFKDDNPVKE-----SRHFQIDYDEE 95
Query: 314 GTEIKKSELLIYNSNIDDNGTFVCVAENQAGSTS 347
G L I DD+ + C A N G +
Sbjct: 96 GN----CSLTISEVCGDDDAKYTCKAVNSLGEAT 125
>pdb|2EDJ|A Chain A, Solution Structure Of The Fifth Ig-Like Domain From Human
Roundabout Homolog 2
Length = 100
Score = 35.4 bits (80), Expect = 0.12, Method: Composition-based stats.
Identities = 25/74 (33%), Positives = 33/74 (44%), Gaps = 12/74 (16%)
Query: 274 LLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNG 333
L CK + P I+WL +G A+ E+GT L I N I D G
Sbjct: 28 LKCKATGDPLPVISWLKEGFTFPGRDPRAT------IQEQGT------LQIKNLRISDTG 75
Query: 334 TFVCVAENQAGSTS 347
T+ CVA + +G TS
Sbjct: 76 TYTCVATSSSGETS 89
>pdb|2IFG|A Chain A, Structure Of The Extracellular Segment Of Human Trka In
Complex With Nerve Growth Factor
pdb|2IFG|B Chain B, Structure Of The Extracellular Segment Of Human Trka In
Complex With Nerve Growth Factor
Length = 347
Score = 35.4 bits (80), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 37/86 (43%)
Query: 135 IKQIKTGAFQPLSYLVTLELSKCGIEVIEDAAFVGLDSLEWLKLDNNKITTISGSNILPT 194
++ ++ + L L L + K G+ + AF L L L N + ++S +
Sbjct: 44 LQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGL 103
Query: 195 GLHGIDLHHNPWTCDCLLIGLRRWLE 220
L + L NP C C L L+RW E
Sbjct: 104 SLQELVLSGNPLHCSCALRWLQRWEE 129
Score = 32.7 bits (73), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 30/120 (25%), Positives = 48/120 (40%), Gaps = 7/120 (5%)
Query: 18 CPTSCICKWKGGKQTVECVNKSLITVVEGMDPNTQVLD--YTGNNLKTLHNEKFQKMGLV 75
CP +C G + C + + + P + L Y N H E GL
Sbjct: 1 CPDACC---PHGSSGLRCTRDGALDSLHHL-PGAENLTELYIENQQHLQHLELRDLRGLG 56
Query: 76 NLQKIYLSRCRISVIDSKAFRGLTNLVDLDFSHNVLQTVPSDTFPDYPSLMKLTLSGNPI 135
L+ + + + + + AF L L+ S N L+++ T SL +L LSGNP+
Sbjct: 57 ELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGL-SLQELVLSGNPL 115
Score = 32.7 bits (73), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 38/76 (50%), Gaps = 1/76 (1%)
Query: 73 GLVNLQKIYL-SRCRISVIDSKAFRGLTNLVDLDFSHNVLQTVPSDTFPDYPSLMKLTLS 131
G NL ++Y+ ++ + ++ + RGL L +L + L+ V D F P L +L LS
Sbjct: 29 GAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLS 88
Query: 132 GNPIKQIKTGAFQPLS 147
N ++ + Q LS
Sbjct: 89 FNALESLSWKTVQGLS 104
>pdb|3B5H|A Chain A, Crystal Structure Of The Extracellular Portion Of
Hab18gCD147
pdb|3B5H|B Chain B, Crystal Structure Of The Extracellular Portion Of
Hab18gCD147
pdb|3B5H|C Chain C, Crystal Structure Of The Extracellular Portion Of
Hab18gCD147
pdb|3B5H|D Chain D, Crystal Structure Of The Extracellular Portion Of
Hab18gCD147
Length = 184
Score = 35.4 bits (80), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 28/103 (27%), Positives = 48/103 (46%), Gaps = 8/103 (7%)
Query: 255 PQITPSTFYLEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNES--MSASESHAVYSTE 312
P++ I EG+ L+CK ++P W + + + M+ SES S+
Sbjct: 84 PRVKAVKSSEHINEGETAMLVCKSESVPPV-TDWAWYKITDSEDKALMNGSESRFFVSSS 142
Query: 313 EGTEIKKSELLIYNSNID-DNGTFVCVAENQAGSTSSNYTIRI 354
+G +SEL I N N++ D G + C + GS + T+R+
Sbjct: 143 QG----RSELHIENLNMEADPGQYRCNGTSSKGSDQAIITLRV 181
>pdb|1CVS|C Chain C, Crystal Structure Of A Dimeric Fgf2-Fgfr1 Complex
pdb|1CVS|D Chain D, Crystal Structure Of A Dimeric Fgf2-Fgfr1 Complex
pdb|1FQ9|C Chain C, Crystal Structure Of A Ternary Fgf2-Fgfr1-Heparin Complex
pdb|1FQ9|D Chain D, Crystal Structure Of A Ternary Fgf2-Fgfr1-Heparin Complex
Length = 225
Score = 35.0 bits (79), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 41/83 (49%), Gaps = 11/83 (13%)
Query: 269 GKNVSLLCKVSAIPEAKITWL----FDGVPIQNESMSASE---SHAVYSTEEGTEIKKSE 321
G NV +CKV + P+ I WL +G I +++ + + V +T++ E+
Sbjct: 130 GSNVEFMCKVYSDPQPHIQWLKHIEVNGSKIGPDNLPYVQILKTAGVNTTDKEMEV---- 185
Query: 322 LLIYNSNIDDNGTFVCVAENQAG 344
L + N + +D G + C+A N G
Sbjct: 186 LHLRNVSFEDAGEYTCLAGNSIG 208
Score = 32.7 bits (73), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 20/92 (21%), Positives = 39/92 (42%), Gaps = 13/92 (14%)
Query: 266 IQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIY 325
+ K V C S P+ + WL +G + + H + G +++ + I
Sbjct: 28 VPAAKTVKFKCPSSGTPQPTLRWLKNGKEFKPD-------HRI----GGYKVRYATWSII 76
Query: 326 NSNI--DDNGTFVCVAENQAGSTSSNYTIRIV 355
++ D G + C+ EN+ GS + Y + +V
Sbjct: 77 MDSVVPSDKGNYTCIVENEYGSINHTYQLDVV 108
>pdb|3OJV|C Chain C, Crystal Structure Of Fgf1 Complexed With The Ectodomain Of
Fgfr1c Exhibiting An Ordered Ligand
Specificity-Determining Betac'-Betae Loop
pdb|3OJV|D Chain D, Crystal Structure Of Fgf1 Complexed With The Ectodomain Of
Fgfr1c Exhibiting An Ordered Ligand
Specificity-Determining Betac'-Betae Loop
Length = 226
Score = 35.0 bits (79), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 41/83 (49%), Gaps = 11/83 (13%)
Query: 269 GKNVSLLCKVSAIPEAKITWL----FDGVPIQNESMSASE---SHAVYSTEEGTEIKKSE 321
G NV +CKV + P+ I WL +G I +++ + + V +T++ E+
Sbjct: 131 GSNVEFMCKVYSDPQPHIQWLKHIEVNGSKIGPDNLPYVQILKTAGVNTTDKEMEV---- 186
Query: 322 LLIYNSNIDDNGTFVCVAENQAG 344
L + N + +D G + C+A N G
Sbjct: 187 LHLRNVSFEDAGEYTCLAGNSIG 209
Score = 32.7 bits (73), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 20/92 (21%), Positives = 39/92 (42%), Gaps = 13/92 (14%)
Query: 266 IQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIY 325
+ K V C S P+ + WL +G + + H + G +++ + I
Sbjct: 29 VPAAKTVKFKCPSSGTPQPTLRWLKNGKEFKPD-------HRI----GGYKVRYATWSII 77
Query: 326 NSNI--DDNGTFVCVAENQAGSTSSNYTIRIV 355
++ D G + C+ EN+ GS + Y + +V
Sbjct: 78 MDSVVPSDKGNYTCIVENEYGSINHTYQLDVV 109
>pdb|1EPF|A Chain A, Crystal Structure Of The Two N-Terminal Immunoglobulin
Domains Of The Neural Cell Adhesion Molecule (Ncam)
pdb|1EPF|B Chain B, Crystal Structure Of The Two N-Terminal Immunoglobulin
Domains Of The Neural Cell Adhesion Molecule (Ncam)
pdb|1EPF|C Chain C, Crystal Structure Of The Two N-Terminal Immunoglobulin
Domains Of The Neural Cell Adhesion Molecule (Ncam)
pdb|1EPF|D Chain D, Crystal Structure Of The Two N-Terminal Immunoglobulin
Domains Of The Neural Cell Adhesion Molecule (Ncam)
Length = 191
Score = 35.0 bits (79), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 43/86 (50%), Gaps = 12/86 (13%)
Query: 265 EIQEGKNVSLLCKVSAIPEAK-ITWLFDGVPIQNESMSASESH--AVYSTEEGTEIKKSE 321
EI G++ LC+V+ + K I+W E +S ++ V++ ++ S
Sbjct: 13 EISVGESKFFLCQVAGDAKDKDISWF----SPNGEKLSPNQQRISVVWNDDDS-----ST 63
Query: 322 LLIYNSNIDDNGTFVCVAENQAGSTS 347
L IYN+NIDD G + CV + G+ S
Sbjct: 64 LTIYNANIDDAGIYKCVVTAEDGTQS 89
>pdb|1EVT|C Chain C, Crystal Structure Of Fgf1 In Complex With The
Extracellular Ligand Binding Domain Of Fgf Receptor 1
(Fgfr1)
pdb|1EVT|D Chain D, Crystal Structure Of Fgf1 In Complex With The
Extracellular Ligand Binding Domain Of Fgf Receptor 1
(Fgfr1)
Length = 225
Score = 35.0 bits (79), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 41/83 (49%), Gaps = 11/83 (13%)
Query: 269 GKNVSLLCKVSAIPEAKITWL----FDGVPIQNESMSASE---SHAVYSTEEGTEIKKSE 321
G NV +CKV + P+ I WL +G I +++ + + V +T++ E+
Sbjct: 130 GSNVEFMCKVYSDPQPHIQWLKHIEVNGSKIGPDNLPYVQILKTAGVNTTDKEMEV---- 185
Query: 322 LLIYNSNIDDNGTFVCVAENQAG 344
L + N + +D G + C+A N G
Sbjct: 186 LHLRNVSFEDAGEYTCLAGNSIG 208
Score = 31.6 bits (70), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 20/92 (21%), Positives = 38/92 (41%), Gaps = 13/92 (14%)
Query: 266 IQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIY 325
+ K V C S P + WL +G + + H + G +++ + I
Sbjct: 28 VPAAKTVKFKCPSSGTPNPTLRWLKNGKEFKPD-------HRI----GGYKVRYATWSII 76
Query: 326 NSNI--DDNGTFVCVAENQAGSTSSNYTIRIV 355
++ D G + C+ EN+ GS + Y + +V
Sbjct: 77 MDSVVPSDKGNYTCIVENEYGSINHTYQLDVV 108
>pdb|2V5R|A Chain A, Structural Basis For Dscam Isoform Specificity
pdb|2V5R|B Chain B, Structural Basis For Dscam Isoform Specificity
Length = 391
Score = 35.0 bits (79), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 49/209 (23%), Positives = 84/209 (40%), Gaps = 49/209 (23%)
Query: 156 KCGI-EVIEDAAFVGLDSLEWLKLD------NNKITTISGSNILPTG-LH----GIDLHH 203
KC I + D FV L WL + NN T +LP+G LH G + +
Sbjct: 124 KCEIPSYVADFVFVDL----WLDSEGRNYYPNNAAETDGKYLVLPSGELHIREVGPEDGY 179
Query: 204 NPWTCDC--LLIGLRRWLESTKTPMAI-DPICSVPPRLSSVTIKQLSIDELACEPQITPS 260
+ C L G R L +TK + I +P+ SV P+++ Q
Sbjct: 180 KSYQCRTKHRLTGETR-LSATKGRLVITEPVGSVRPKVNPQDKHQ--------------- 223
Query: 261 TFYLEIQEGKNVSLLCKVSAIPEAKITW--LFDGVPIQNESMSASESHAVYSTEEGTEIK 318
+++++ + SLLC + P W +G + AV + ++
Sbjct: 224 --FIDVELASSYSLLCMAQSYPTPSFRWYKFIEG---------TTRKQAVVLNDRVKQVS 272
Query: 319 KSELLIYNSNIDDNGTFVCVAENQAGSTS 347
+ L+I ++ ++D+G ++CV N G S
Sbjct: 273 GT-LIIKDAVVEDSGKYLCVVNNSVGGES 300
>pdb|1RY7|B Chain B, Crystal Structure Of The 3 Ig Form Of Fgfr3c In Complex
With Fgf1
Length = 334
Score = 34.7 bits (78), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 21/94 (22%), Positives = 39/94 (41%), Gaps = 13/94 (13%)
Query: 264 LEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELL 323
L + V C + P I+WL +G + E H + G +++ +
Sbjct: 133 LAVPAANTVRFRCPAAGNPTPSISWLKNGREFRGE-------HRI----GGIKLRHQQWS 181
Query: 324 IYNSNI--DDNGTFVCVAENQAGSTSSNYTIRIV 355
+ ++ D G + CV EN+ GS YT+ ++
Sbjct: 182 LVMESVVPSDRGNYTCVVENKFGSIRQTYTLDVL 215
>pdb|3GRW|A Chain A, Fgfr3 In Complex With A Fab
Length = 241
Score = 34.7 bits (78), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 21/94 (22%), Positives = 39/94 (41%), Gaps = 13/94 (13%)
Query: 264 LEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELL 323
L + V C + P I+WL +G + E H + G +++ +
Sbjct: 25 LAVPAANTVRFRCPAAGNPTPSISWLKNGREFRGE-------HRI----GGIKLRHQQWS 73
Query: 324 IYNSNI--DDNGTFVCVAENQAGSTSSNYTIRIV 355
+ ++ D G + CV EN+ GS YT+ ++
Sbjct: 74 LVMESVVPSDRGNYTCVVENKFGSIRQTYTLDVL 107
>pdb|2NCM|A Chain A, Neural Cell Adhesion Molecule, Nmr, 20 Structures
Length = 99
Score = 34.3 bits (77), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 43/86 (50%), Gaps = 12/86 (13%)
Query: 265 EIQEGKNVSLLCKVSAIPEAK-ITWLFDGVPIQNESMSASESH--AVYSTEEGTEIKKSE 321
EI G++ LC+V+ + K I+W E +S ++ V++ ++ S
Sbjct: 13 EISVGESKFFLCQVAGDAKDKDISWF----SPNGEKLSPNQQRISVVWNDDD-----SST 63
Query: 322 LLIYNSNIDDNGTFVCVAENQAGSTS 347
L IYN+NIDD G + CV + G+ S
Sbjct: 64 LTIYNANIDDAGIYKCVVTAEDGTQS 89
>pdb|2O26|X Chain X, Structure Of A Class Iii Rtk Signaling Assembly
pdb|2O26|Y Chain Y, Structure Of A Class Iii Rtk Signaling Assembly
pdb|2O26|U Chain U, Structure Of A Class Iii Rtk Signaling Assembly
pdb|2O26|W Chain W, Structure Of A Class Iii Rtk Signaling Assembly
Length = 290
Score = 34.3 bits (77), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 25/40 (62%)
Query: 318 KKSELLIYNSNIDDNGTFVCVAENQAGSTSSNYTIRIVLK 357
++ L I ++ +DD+G F+C A N GS + T+++V K
Sbjct: 250 RQETLTISSARVDDSGVFMCYANNTFGSANVTTTLKVVEK 289
>pdb|3JXA|A Chain A, Immunoglobulin Domains 1-4 Of Mouse Cntn4
pdb|3JXA|B Chain B, Immunoglobulin Domains 1-4 Of Mouse Cntn4
Length = 383
Score = 34.3 bits (77), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 21/80 (26%), Positives = 36/80 (45%), Gaps = 14/80 (17%)
Query: 276 CKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTF 335
CK + P+ WL +G P+ T + +I++ L I N+ D G +
Sbjct: 316 CKANGRPKPTYRWLKNGDPLL--------------TRDRIQIEQGTLNITIVNLSDAGMY 361
Query: 336 VCVAENQAGSTSSNYTIRIV 355
CVAEN+ G S+ + ++
Sbjct: 362 QCVAENKHGVIFSSAELSVI 381
Score = 33.1 bits (74), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 37/82 (45%), Gaps = 13/82 (15%)
Query: 268 EGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNS 327
E K V L C+V P+ I W +G + + M YS +G+ LLI N
Sbjct: 21 EEKKVKLSCEVKGNPKPHIRWKLNGTDV-DIGMDFR-----YSVVDGS------LLINNP 68
Query: 328 N-IDDNGTFVCVAENQAGSTSS 348
N D GT+ C+A N G+ S
Sbjct: 69 NKTQDAGTYQCIATNSFGTIVS 90
>pdb|2V5S|A Chain A, Structural Basis For Dscam Isoform Specificity
pdb|2V5S|B Chain B, Structural Basis For Dscam Isoform Specificity
Length = 394
Score = 34.3 bits (77), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 40/167 (23%), Positives = 66/167 (39%), Gaps = 39/167 (23%)
Query: 191 ILPTG-LH----GIDLHHNPWTCDC--LLIGLRRWLESTKTPMAI-DPICSVPPRLSSVT 242
+LP+G LH G + + + C L G R L +TK + I +PI S PR ++
Sbjct: 166 VLPSGELHIREVGPEDGYKSYQCRTKHRLTGETR-LSATKGRLVITEPISSSAPRTPALV 224
Query: 243 IKQLSIDELACEPQITPSTFYLEIQEGKNVSLLCKVSAIPEAKITW--LFDGVPIQNESM 300
K L E+ +SLLC P W +G
Sbjct: 225 QKPL------------------ELMVAHTISLLCPAQGFPAPSFRWYKFIEGT------- 259
Query: 301 SASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCVAENQAGSTS 347
+ AV + ++ + L+I ++ ++D+G ++CV N G S
Sbjct: 260 --TRKQAVVLNDRVKQVSGT-LIIKDAVVEDSGKYLCVVNNSVGGES 303
>pdb|1BIH|A Chain A, Crystal Structure Of The Insect Immune Protein Hemolin: A
New Domain Arrangement With Implications For Homophilic
Adhesion
pdb|1BIH|B Chain B, Crystal Structure Of The Insect Immune Protein Hemolin: A
New Domain Arrangement With Implications For Homophilic
Adhesion
Length = 395
Score = 34.3 bits (77), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 17/79 (21%), Positives = 35/79 (44%), Gaps = 15/79 (18%)
Query: 266 IQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIY 325
+++G++V++ CKV+ +P + W + P+ + ++S L+I
Sbjct: 321 VKQGQDVTIPCKVTGLPAPNVVWSHNAKPLSGGRATVTDSG---------------LVIK 365
Query: 326 NSNIDDNGTFVCVAENQAG 344
D G + C A N+ G
Sbjct: 366 GVKNGDKGYYGCRATNEHG 384
>pdb|3KLD|A Chain A, Ptprg Cntn4 Complex
Length = 384
Score = 34.3 bits (77), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 21/80 (26%), Positives = 36/80 (45%), Gaps = 14/80 (17%)
Query: 276 CKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTF 335
CK + P+ WL +G P+ T + +I++ L I N+ D G +
Sbjct: 317 CKANGRPKPTYRWLKNGDPLL--------------TRDRIQIEQGTLNITIVNLSDAGMY 362
Query: 336 VCVAENQAGSTSSNYTIRIV 355
CVAEN+ G S+ + ++
Sbjct: 363 QCVAENKHGVIFSSAELSVI 382
Score = 33.1 bits (74), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 37/82 (45%), Gaps = 13/82 (15%)
Query: 268 EGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNS 327
E K V L C+V P+ I W +G + + M YS +G+ LLI N
Sbjct: 22 EEKKVKLSCEVKGNPKPHIRWKLNGTDV-DIGMDFR-----YSVVDGS------LLINNP 69
Query: 328 N-IDDNGTFVCVAENQAGSTSS 348
N D GT+ C+A N G+ S
Sbjct: 70 NKTQDAGTYQCIATNSFGTIVS 91
>pdb|3O8X|C Chain C, Recognition Of Glycolipid Antigen By Inkt Cell Tcr
pdb|3O9W|C Chain C, Recognition Of A Glycolipid Antigen By The Inkt Cell Tcr
pdb|3QUX|C Chain C, Structure Of The Mouse Cd1d-Alpha-C-Galcer-Inkt Tcr
Complex
pdb|3QUY|C Chain C, Structure Of The Mouse Cd1d-Bnnh-Gsl-1'-Inkt Tcr Complex
pdb|3QUZ|C Chain C, Structure Of The Mouse Cd1d-Nu-Alpha-Galcer-Inkt Tcr
Complex
pdb|3RZC|C Chain C, Structure Of The Self-Antigen Igb3 Bound To Mouse Cd1d And
In Complex With The Inkt Tcr
pdb|3TA3|C Chain C, Structure Of The Mouse Cd1d-Glc-Dag-S2-Inkt Tcr Complex
pdb|3TVM|C Chain C, Structure Of The Mouse Cd1d-Smc124-Inkt Tcr Complex
pdb|3TVM|G Chain G, Structure Of The Mouse Cd1d-Smc124-Inkt Tcr Complex
pdb|3RTQ|C Chain C, Structure Of The Mouse Cd1d-Hs44-Inkt Tcr Complex
Length = 209
Score = 34.3 bits (77), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 23/98 (23%), Positives = 42/98 (42%), Gaps = 6/98 (6%)
Query: 254 EPQITPSTFYLEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSA------SESHA 307
+ Q+ S L +++G+N L C S P+ + W S++ S+
Sbjct: 2 KTQVEQSPQSLVVRQGENCVLQCNYSVTPDNHLRWFKQDTGKGLVSLTVLVDQKDKTSNG 61
Query: 308 VYSTEEGTEIKKSELLIYNSNIDDNGTFVCVAENQAGS 345
YS + K S L I + +DD T++CV ++ +
Sbjct: 62 RYSATLDKDAKHSTLHITATLLDDTATYICVVGDRGSA 99
>pdb|2Z7X|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 520
Score = 34.3 bits (77), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 44/164 (26%), Positives = 66/164 (40%), Gaps = 30/164 (18%)
Query: 59 NNLKTLHNEKFQKMGLVNLQKIYLSRCRISVIDSKAFRGLT-NLVDLDFSHNVLQTVPSD 117
N LK L + +LQ++ +S+ +S + K T +L+ L+ S N+L
Sbjct: 358 NQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFR 417
Query: 118 TFPDYPSLMKLTLSGNPIKQIKTGAFQPLSYLVTLELSKCGIEVIEDAAFVGLDSLEWLK 177
P P + L L N IK I V L++L+ L
Sbjct: 418 CLP--PRIKVLDLHSNKIKSIPKQV-------------------------VKLEALQELN 450
Query: 178 LDNNKITTI-SGSNILPTGLHGIDLHHNPWTCDCLLIG-LRRWL 219
+ +N++ ++ G T L I LH NPW C C I L RWL
Sbjct: 451 VASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSRWL 494
Score = 29.6 bits (65), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 33/104 (31%), Positives = 47/104 (45%), Gaps = 7/104 (6%)
Query: 104 LDFSHNVLQTVPSDTFPDYPSLMKLTLSGNPIKQIKTGAFQPLSYLVTLELSKCGIEVIE 163
+D S N L VP D L +S N I ++ T LS L L +S I+ ++
Sbjct: 5 VDRSKNGLIHVPKDL---SQKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLD 61
Query: 164 DAAFVGLDSLEWLKLDNNKITTISGSNILPT-GLHGIDLHHNPW 206
+ F LE+L L +NK+ IS PT L +DL N +
Sbjct: 62 ISVFKFNQELEYLDLSHNKLVKISCH---PTVNLKHLDLSFNAF 102
>pdb|2V5M|A Chain A, Structural Basis For Dscam Isoform Specificity
Length = 388
Score = 33.9 bits (76), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 40/167 (23%), Positives = 66/167 (39%), Gaps = 39/167 (23%)
Query: 191 ILPTG-LH----GIDLHHNPWTCDC--LLIGLRRWLESTKTPMAI-DPICSVPPRLSSVT 242
+LP+G LH G + + + C L G R L +TK + I +PI S PR ++
Sbjct: 160 VLPSGELHIREVGPEDGYKSYQCRTKHRLTGETR-LSATKGRLVITEPISSSAPRTPALV 218
Query: 243 IKQLSIDELACEPQITPSTFYLEIQEGKNVSLLCKVSAIPEAKITW--LFDGVPIQNESM 300
K L E+ +SLLC P W +G
Sbjct: 219 QKPL------------------ELMVAHTISLLCPAQGFPAPSFRWYKFIEGT------- 253
Query: 301 SASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCVAENQAGSTS 347
+ AV + ++ + L+I ++ ++D+G ++CV N G S
Sbjct: 254 --TRKQAVVLNDRVKQVSGT-LIIKDAVVEDSGKYLCVVNNSVGGES 297
>pdb|2IEP|A Chain A, Crystal Structure Of Immunoglobulin-Like Domains 1 And 2
Of The Receptor Tyrosine Kinase Musk
pdb|2IEP|B Chain B, Crystal Structure Of Immunoglobulin-Like Domains 1 And 2
Of The Receptor Tyrosine Kinase Musk
Length = 192
Score = 33.9 bits (76), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 44/96 (45%), Gaps = 13/96 (13%)
Query: 254 EPQITPSTFYLEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEE 313
+P+IT ++I EG L C P+ ++W I+ +S + E+ + E
Sbjct: 100 KPKITRPPINVKIIEGLKAVLPCTTMGNPKPSVSW------IKGDS-ALRENSRIAVLES 152
Query: 314 GTEIKKSELLIYNSNIDDNGTFVCVAENQAGSTSSN 349
G+ L I+N +D G + CVA+N G+ S
Sbjct: 153 GS------LRIHNVQKEDAGQYRCVAKNSLGTAYSK 182
>pdb|1YA5|A Chain A, Crystal Structure Of The Titin Domains Z1z2 In Complex
With Telethonin
pdb|1YA5|B Chain B, Crystal Structure Of The Titin Domains Z1z2 In Complex
With Telethonin
pdb|2F8V|A Chain A, Structure Of Full Length Telethonin In Complex With The
N-Terminus Of Titin
pdb|2F8V|B Chain B, Structure Of Full Length Telethonin In Complex With The
N-Terminus Of Titin
pdb|2F8V|C Chain C, Structure Of Full Length Telethonin In Complex With The
N-Terminus Of Titin
pdb|2F8V|D Chain D, Structure Of Full Length Telethonin In Complex With The
N-Terminus Of Titin
Length = 201
Score = 33.9 bits (76), Expect = 0.36, Method: Composition-based stats.
Identities = 31/122 (25%), Positives = 53/122 (43%), Gaps = 19/122 (15%)
Query: 247 SIDELACEPQITPSTFY-----LEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNE-SM 300
S EL + + P F + +++G V L +V+ IP + + DG IQ+
Sbjct: 91 STAELLVKAETAPPNFVQRLQSMTVRQGSQVRLQVRVTGIPTPVVKFYRDGAEIQSSLDF 150
Query: 301 SASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCVAENQAGSTSSNYTIRIVLKEEN 360
S+ +YS LLI + +D+GT+ A N G +S T ++++ E
Sbjct: 151 QISQEGDLYS-----------LLIAEAYPEDSGTYSVNATNSVGRATS--TAELLVQGET 197
Query: 361 VE 362
E
Sbjct: 198 RE 199
>pdb|2V9Q|A Chain A, First And Second Ig Domains From Human Robo1
pdb|2V9R|A Chain A, First And Second Ig Domains From Human Robo1 (Form 2)
Length = 212
Score = 33.9 bits (76), Expect = 0.38, Method: Composition-based stats.
Identities = 21/76 (27%), Positives = 32/76 (42%), Gaps = 13/76 (17%)
Query: 282 PEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCVAEN 341
PE I+W DG P+ ++ +E I+ +L+I + D G +VCV N
Sbjct: 140 PEPTISWKKDGSPLDDK-------------DERITIRGGKLMITYTRKSDAGKYVCVGTN 186
Query: 342 QAGSTSSNYTIRIVLK 357
G S VL+
Sbjct: 187 MVGERESEVAELTVLE 202
>pdb|2A38|A Chain A, Crystal Structure Of The N-Terminus Of Titin
pdb|2A38|B Chain B, Crystal Structure Of The N-Terminus Of Titin
pdb|2A38|C Chain C, Crystal Structure Of The N-Terminus Of Titin
Length = 194
Score = 33.9 bits (76), Expect = 0.38, Method: Composition-based stats.
Identities = 28/108 (25%), Positives = 46/108 (42%), Gaps = 17/108 (15%)
Query: 247 SIDELACEPQITPSTFY-----LEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNE-SM 300
S EL + + P F + +++G V L +V+ IP + + DG IQ+
Sbjct: 91 STAELLVKAETAPPNFVQRLQSMTVRQGSQVRLQVRVTGIPTPVVKFYRDGAEIQSSLDF 150
Query: 301 SASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCVAENQAGSTSS 348
S+ +YS LLI + +D+GT+ A N G +S
Sbjct: 151 QISQEGDLYS-----------LLIAEAYPEDSGTYSVNATNSVGRATS 187
>pdb|3TO4|C Chain C, Structure Of Mouse
Valpha14vbeta2-Mousecd1d-Alpha-Galactosylceramide
Length = 212
Score = 33.5 bits (75), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 23/96 (23%), Positives = 41/96 (42%), Gaps = 6/96 (6%)
Query: 256 QITPSTFYLEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSA------SESHAVY 309
Q+ S L +++G+N L C S P+ + W S++ S+ Y
Sbjct: 2 QVEQSPQSLVVRQGENSVLQCNYSVTPDNHLRWFKQDTGKGLVSLTVLVDQKDKTSNGRY 61
Query: 310 STEEGTEIKKSELLIYNSNIDDNGTFVCVAENQAGS 345
S + K S L I + +DD T++CV ++ +
Sbjct: 62 SATLDKDAKHSTLHITATLLDDTATYICVVGDRGSA 97
>pdb|3MTR|A Chain A, Crystal Structure Of The Ig5-Fn1 Tandem Of Human Ncam
pdb|3MTR|B Chain B, Crystal Structure Of The Ig5-Fn1 Tandem Of Human Ncam
Length = 215
Score = 33.5 bits (75), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 41/87 (47%), Gaps = 12/87 (13%)
Query: 268 EGKNVSLLCKVSAIPEAKITWLFDG--VPIQNESMSASESHAVYSTEEGTEIKKSELLIY 325
EG V++ C+V A P A I+W DG +P N S + +Y+T S L +
Sbjct: 32 EGNQVNITCEVFAYPSATISWFRDGQLLPSSNYS-----NIKIYNTPSA-----SYLEVT 81
Query: 326 NSNIDDNGTFVCVAENQAGSTSSNYTI 352
+ +D G + C A N+ G S + +
Sbjct: 82 PDSENDFGNYNCTAVNRIGQESLEFIL 108
>pdb|3P3Y|A Chain A, Crystal Structure Of Neurofascin Homophilic Adhesion
Complex In Space Group P6522
pdb|3P40|A Chain A, Crystal Structure Of Neurofascin Adhesion Complex In Space
Group P3221
Length = 404
Score = 33.5 bits (75), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 29/120 (24%), Positives = 49/120 (40%), Gaps = 23/120 (19%)
Query: 242 TIKQLSIDELACEPQITPSTFYLE-------IQEGKNVSLLCKVSAIPEAKITWLFDGVP 294
T+K L+ +A + TPS Y + + G ++ L C S +P I W G
Sbjct: 206 TLKVLTTRGVA---ERTPSFMYPQGTASSQMVLRGMDLLLECIASGVPTPDIAWYKKG-- 260
Query: 295 IQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCVAENQAGSTSSNYTIRI 354
+ S + E L I N + +D+G + C+A N+ GS ++R+
Sbjct: 261 -----------GDLPSDKAKFENFNKALRITNVSEEDSGEYFCLASNKMGSIRHTISVRV 309
Score = 31.2 bits (69), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 15/92 (16%), Positives = 40/92 (43%), Gaps = 11/92 (11%)
Query: 264 LEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELL 323
L + G++ L+C+ + P+ + W+ +G P+Q+ + + E+ ++
Sbjct: 322 LILAPGEDGRLVCRANGNPKPTVQWMVNGEPLQSAPPNPNR-----------EVAGDTII 370
Query: 324 IYNSNIDDNGTFVCVAENQAGSTSSNYTIRIV 355
++ I + C N+ G +N + ++
Sbjct: 371 FRDTQISSRAVYQCNTSNEHGYLLANAFVSVL 402
>pdb|3HE6|C Chain C, Crystal Structure Of Mouse Cd1d-Alpha-Galactosylceramide
With Mouse Valpha14-Vbeta8.2 Nkt Tcr
pdb|3HE7|C Chain C, Crystal Structure Of Mouse Cd1d-Alpha-Galactosylceramide
With Mouse Valpha14-Vbeta7 Nkt Tcr
pdb|3ARB|C Chain C, Ternary Crystal Structure Of The Nkt
Tcr-Cd1d-Alpha-Galactosylceramide Analogue-Och
pdb|3ARD|C Chain C, Ternary Crystal Structure Of The Mouse Nkt
Tcr-Cd1d-3'deoxy-Alpha- Galactosylceramide
pdb|3ARE|C Chain C, Ternary Crystal Structure Of The Mouse Nkt
Tcr-Cd1d-4'deoxy-Alpha- Galactosylceramide
pdb|3ARF|C Chain C, Ternary Crystal Structure Of The Mouse Nkt Tcr-Cd1d-C20:2
pdb|3ARG|C Chain C, Ternary Crystal Structure Of The Mouse Nkt Tcr-Cd1d-Alpha-
Glucosylceramide(C20:2)
pdb|3SCM|C Chain C, Crystal Structure Of Autoreactive-Valpha14-Vbeta6 Nkt Tcr
In Complex With Cd1d-Isoglobotrihexosylceramide
pdb|3SDA|C Chain C, Crystal Structure Of Autoreactive-Valpha14-Vbeta6 Nkt Tcr
In Complex With Cd1d-Beta-Galactosylceramide
pdb|3SDC|C Chain C, Crystal Structure Of Autoreactive-Valpha14-Vbeta6 Nkt Tcr
In Complex With Cd1d-Globotrihexosylceramide
pdb|3SDD|C Chain C, Crystal Structure Of Autoreactive-Valpha14-Vbeta6 Nkt Tcr
In Complex With Cd1d-Beta-Lactosylceramide
pdb|3TN0|C Chain C, Structure Of Mouse Va14vb8.2nkt Tcr-Mouse
Cd1d-A-C-Galactosylceramide Complex
pdb|3QI9|C Chain C, Crystal Structure Of Mouse Cd1d-Alpha-Phosphotidylinositol
With Mouse Valpha14-Vbeta6 2a3-D Nkt Tcr
Length = 207
Score = 33.5 bits (75), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 23/96 (23%), Positives = 41/96 (42%), Gaps = 6/96 (6%)
Query: 256 QITPSTFYLEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSA------SESHAVY 309
Q+ S L +++G+N L C S P+ + W S++ S+ Y
Sbjct: 2 QVEQSPQSLVVRQGENSVLQCNYSVTPDNHLRWFKQDTGKGLVSLTVLVDQKDKTSNGRY 61
Query: 310 STEEGTEIKKSELLIYNSNIDDNGTFVCVAENQAGS 345
S + K S L I + +DD T++CV ++ +
Sbjct: 62 SATLDKDAKHSTLHITATLLDDTATYICVVGDRGSA 97
>pdb|2J8H|A Chain A, Structure Of The Immunoglobulin Tandem Repeat A168-A169 Of
Titin
pdb|2J8O|A Chain A, Structure Of The Immunoglobulin Tandem Repeat Of Titin
A168- A169
pdb|2J8O|B Chain B, Structure Of The Immunoglobulin Tandem Repeat Of Titin
A168- A169
Length = 197
Score = 33.1 bits (74), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 24/103 (23%), Positives = 42/103 (40%), Gaps = 8/103 (7%)
Query: 252 ACEPQITPSTFYLEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYST 311
A P L ++ N +L+CKV+ P+ + W G I + + Y
Sbjct: 2 AMAPHFKEELRNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADGLK-------YRI 54
Query: 312 EEGTEIKKSELLIYNSNIDDNGTFVCVAENQAGSTSSNYTIRI 354
+E + +L+I + DD + A NQ GS S ++ +
Sbjct: 55 QE-FKGGYHQLIIASVTDDDATVYQVRATNQGGSVSGTASLEV 96
>pdb|3DMK|A Chain A, Crystal Structure Of Down Syndrome Cell Adhesion Molecule
(Dscam) Isoform 1.30.30, N-Terminal Eight Ig Domains
pdb|3DMK|B Chain B, Crystal Structure Of Down Syndrome Cell Adhesion Molecule
(Dscam) Isoform 1.30.30, N-Terminal Eight Ig Domains
pdb|3DMK|C Chain C, Crystal Structure Of Down Syndrome Cell Adhesion Molecule
(Dscam) Isoform 1.30.30, N-Terminal Eight Ig Domains
Length = 816
Score = 32.7 bits (73), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 40/92 (43%), Gaps = 6/92 (6%)
Query: 254 EPQITPSTFYLEIQE-GKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTE 312
+P + F E E G +V L C P +I+W DG I N Y T
Sbjct: 428 DPPVIRQAFQEETMEPGPSVFLKCVAGGNPTPEISWELDGKKIANNDRYQV---GQYVTV 484
Query: 313 EGTEIKKSELLIYNSNIDDNGTFVCVAENQAG 344
G + S L I + + +D G + C+A+++ G
Sbjct: 485 NGDVV--SYLNITSVHANDGGLYKCIAKSKVG 514
>pdb|3KNB|A Chain A, Crystal Structure Of The Titin C-Terminus In Complex With
Obscurin- Like 1
pdb|3Q5O|A Chain A, Crystal Structure Of Human Titin Domain M10
pdb|3Q5O|B Chain B, Crystal Structure Of Human Titin Domain M10
Length = 100
Score = 32.3 bits (72), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 24/100 (24%), Positives = 42/100 (42%), Gaps = 8/100 (8%)
Query: 255 PQITPSTFYLEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEG 314
P+I + I EGK +++ C + P ++TW G I S+ + E
Sbjct: 6 PKIEALPSDISIDEGKVLTVACAFTGEPTPEVTWSCGGRKIH------SQEQGRFHIENT 59
Query: 315 TEIKKSELLIYNSNIDDNGTFVCVAENQAGSTSSNYTIRI 354
++ + L+I + D G + N+ GS S+ I I
Sbjct: 60 DDL--TTLIIMDVQKQDGGLYTLSLGNEFGSDSATVNIHI 97
>pdb|4AY9|X Chain X, Structure Of Follicle-Stimulating Hormone In Complex With
The Entire Ectodomain Of Its Receptor
pdb|4AY9|Y Chain Y, Structure Of Follicle-Stimulating Hormone In Complex With
The Entire Ectodomain Of Its Receptor
pdb|4AY9|Z Chain Z, Structure Of Follicle-Stimulating Hormone In Complex With
The Entire Ectodomain Of Its Receptor
Length = 350
Score = 32.3 bits (72), Expect = 1.00, Method: Compositional matrix adjust.
Identities = 43/181 (23%), Positives = 75/181 (41%), Gaps = 32/181 (17%)
Query: 35 CVNKSLITVVEGMDPNTQVLDYTGNNLKTLHNEKFQKMGLVNLQKIYLSRCRI-SVIDSK 93
C + + + N L + L+ + F G +L+KI +S+ + VI++
Sbjct: 16 CQESKVTEIPSDLPRNAIELRFVLTKLRVIQKGAFSGFG--DLEKIEISQNDVLEVIEAD 73
Query: 94 AFRGLTNL--VDLDFSHNVLQTVPSDTFPDYPSLMKLTLSGNPIKQ-------------- 137
F L L + ++ ++N+L P + F + P+L L +S IK
Sbjct: 74 VFSNLPKLHEIRIEKANNLLYINP-EAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVL 132
Query: 138 -----------IKTGAFQPLSY-LVTLELSKCGIEVIEDAAFVGLDSLEWLKLDNNKITT 185
I+ +F LS+ V L L+K GI+ I ++AF G E DNN +
Sbjct: 133 LDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLEE 192
Query: 186 I 186
+
Sbjct: 193 L 193
>pdb|2NZI|A Chain A, Crystal Structure Of Domains A168-A170 From Titin
pdb|2NZI|B Chain B, Crystal Structure Of Domains A168-A170 From Titin
Length = 305
Score = 32.3 bits (72), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 24/103 (23%), Positives = 42/103 (40%), Gaps = 8/103 (7%)
Query: 252 ACEPQITPSTFYLEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYST 311
A P L ++ N +L+CKV+ P+ + W G I + + Y
Sbjct: 2 AMAPHFKEELRNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADGLK-------YRI 54
Query: 312 EEGTEIKKSELLIYNSNIDDNGTFVCVAENQAGSTSSNYTIRI 354
+E + +L+I + DD + A NQ GS S ++ +
Sbjct: 55 QE-FKGGYHQLIIASVTDDDATVYQVRATNQGGSVSGTASLEV 96
>pdb|1H5B|C Chain C, T Cell Receptor Valpha11 (Av11s5) Domain
Length = 113
Score = 32.3 bits (72), Expect = 1.0, Method: Composition-based stats.
Identities = 22/95 (23%), Positives = 43/95 (45%), Gaps = 6/95 (6%)
Query: 256 QITPSTFYLEIQEGKNVSLLCKVSAIPEAKITWLFDG-----VPIQNESMSASESHAVYS 310
Q+ S L + EG + +L C + + + W + + + E+ + S
Sbjct: 3 QVEQSPSALSLHEGTDSALRCNFTTTMRS-VQWFRQNSRGSLISLFYLASGTKENGRLKS 61
Query: 311 TEEGTEIKKSELLIYNSNIDDNGTFVCVAENQAGS 345
+ E + S L I ++ ++D+GT+ C AE +GS
Sbjct: 62 AFDSKERRYSTLHIRDAQLEDSGTYFCAAEASSGS 96
>pdb|2Q86|A Chain A, Structure Of The Mouse Invariant Nkt Cell Receptor
Valpha14
pdb|2Q86|C Chain C, Structure Of The Mouse Invariant Nkt Cell Receptor
Valpha14
Length = 229
Score = 32.3 bits (72), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 26/107 (24%), Positives = 47/107 (43%), Gaps = 6/107 (5%)
Query: 256 QITPSTFYLEIQEGKNVSLLCKVSAIPEAKITWLFD----GVPIQNESMSASE--SHAVY 309
Q+ S L +++G+N L C S P+ + W G+ + + + S+ Y
Sbjct: 3 QVEQSPQSLVVRQGENCVLQCNYSVTPDNHLRWYKQDTGKGLVLLTVLVDQKDKTSNGRY 62
Query: 310 STEEGTEIKKSELLIYNSNIDDNGTFVCVAENQAGSTSSNYTIRIVL 356
S + K S L I + +DD T+ CV ++ + + T IV+
Sbjct: 63 SATLDKDAKHSTLHITATLLDDTATYFCVVGDRGSALFGSGTQLIVI 109
>pdb|2ILL|A Chain A, Anomalous Substructure Of Titin-A168169
Length = 195
Score = 32.3 bits (72), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 22/91 (24%), Positives = 40/91 (43%), Gaps = 8/91 (8%)
Query: 264 LEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELL 323
L ++ N +L+CKV+ P+ + W G I + + Y +E + +L+
Sbjct: 12 LNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADGLK-------YRIQE-FKGGYHQLI 63
Query: 324 IYNSNIDDNGTFVCVAENQAGSTSSNYTIRI 354
I + DD + A NQ GS S ++ +
Sbjct: 64 IASVTDDDATVYQVRATNQGGSVSGTASLEV 94
>pdb|2WP3|T Chain T, Crystal Structure Of The Titin M10-Obscurin Like 1 Ig
Complex
pdb|2WWK|T Chain T, Crystal Structure Of The Titin M10-Obscurin Like 1 Ig F17r
Mutant Complex
pdb|2WWM|D Chain D, Crystal Structure Of The Titin M10-Obscurin Like 1 Ig
Complex In Space Group P1
pdb|2WWM|T Chain T, Crystal Structure Of The Titin M10-Obscurin Like 1 Ig
Complex In Space Group P1
pdb|2Y9R|T Chain T, Crystal Structure Of The M10 Domain Of Titin
Length = 102
Score = 32.3 bits (72), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 24/100 (24%), Positives = 42/100 (42%), Gaps = 8/100 (8%)
Query: 255 PQITPSTFYLEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEG 314
P+I + I EGK +++ C + P ++TW G I S+ + E
Sbjct: 8 PKIEALPSDISIDEGKVLTVACAFTGEPTPEVTWSCGGRKIH------SQEQGRFHIENT 61
Query: 315 TEIKKSELLIYNSNIDDNGTFVCVAENQAGSTSSNYTIRI 354
++ + L+I + D G + N+ GS S+ I I
Sbjct: 62 DDL--TTLIIMDVQKQDGGLYTLSLGNEFGSDSATVNIHI 99
>pdb|2WV3|A Chain A, Neuroplastin-55 Binds To And Signals Through The
Fibroblast Growth Factor Receptor
Length = 190
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 26/105 (24%), Positives = 42/105 (40%), Gaps = 4/105 (3%)
Query: 250 ELACEPQITPSTFYLEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVY 309
E+ P IT EG++ + CK P + W + E ++S +
Sbjct: 88 EVKAAPDITGHKRSENKNEGQDAMMYCKSVGYPHPEWMWRKKENGVFEEISNSSGRFFII 147
Query: 310 STEEGTEIKKSELLIYNSNIDDNGTFVCVAENQAGSTSSNYTIRI 354
+ E TE+ L I +D G + C A N GS S + +R+
Sbjct: 148 NKENYTELNIVNLQI----TEDPGEYECNATNSIGSASVSTVLRV 188
>pdb|4FQP|A Chain A, Crystal Structure Of Human Nectin-Like 5 Full Ectodomain
(D1-D3)
Length = 313
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 17/70 (24%), Positives = 33/70 (47%), Gaps = 1/70 (1%)
Query: 296 QNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCV-AENQAGSTSSNYTIRI 354
Q S S S+ + G E++ + L ++ ++D G + C+ GS S + +R+
Sbjct: 55 QGPSYSESKRLEFVAARLGAELRNASLRMFGLRVEDEGNYTCLFVTFPQGSRSVDIWLRV 114
Query: 355 VLKEENVEVV 364
+ K +N V
Sbjct: 115 LAKPQNTAEV 124
>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase
Inhibiting Protein), A Leucine Rich Repeat Protein
Involved In Plant Defense
Length = 313
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 21/78 (26%), Positives = 33/78 (42%)
Query: 74 LVNLQKIYLSRCRISVIDSKAFRGLTNLVDLDFSHNVLQTVPSDTFPDYPSLMKLTLSGN 133
L L +Y++ +S + LV LDFS+N L + P+L+ +T GN
Sbjct: 100 LTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGN 159
Query: 134 PIKQIKTGAFQPLSYLVT 151
I ++ S L T
Sbjct: 160 RISGAIPDSYGSFSKLFT 177
>pdb|1DGI|R Chain R, Cryo-Em Structure Of Human Poliovirus(Serotype 1)complexed
With Three Domain Cd155
pdb|1NN8|R Chain R, Cryoem Structure Of Poliovirus Receptor Bound To
Poliovirus
pdb|1NN8|S Chain S, Cryoem Structure Of Poliovirus Receptor Bound To
Poliovirus
pdb|1NN8|T Chain T, Cryoem Structure Of Poliovirus Receptor Bound To
Poliovirus
Length = 302
Score = 32.0 bits (71), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 17/70 (24%), Positives = 33/70 (47%), Gaps = 1/70 (1%)
Query: 296 QNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCV-AENQAGSTSSNYTIRI 354
Q S S S+ + G E++ + L ++ ++D G + C+ GS S + +R+
Sbjct: 55 QGPSYSESKRLEFVAARLGAELRNASLRMFGLRVEDEGNYTCLFVTFPQGSRSVDIWLRV 114
Query: 355 VLKEENVEVV 364
+ K +N V
Sbjct: 115 LAKPQNTAEV 124
>pdb|1H5B|B Chain B, T Cell Receptor Valpha11 (Av11s5) Domain
pdb|1H5B|D Chain D, T Cell Receptor Valpha11 (Av11s5) Domain
Length = 113
Score = 31.6 bits (70), Expect = 1.9, Method: Composition-based stats.
Identities = 21/95 (22%), Positives = 43/95 (45%), Gaps = 6/95 (6%)
Query: 256 QITPSTFYLEIQEGKNVSLLCKVSAIPEAKITWLFDG-----VPIQNESMSASESHAVYS 310
Q+ S L + EG + +L C + + + W + + + E+ + S
Sbjct: 3 QVEQSPSALSLHEGTDSALRCNFTTTMRS-VQWFRQNSRGSLISLFYLASGTKENGRLKS 61
Query: 311 TEEGTEIKKSELLIYNSNIDDNGTFVCVAENQAGS 345
+ E + S L I ++ ++D+GT+ C AE +G+
Sbjct: 62 AFDSKERRYSTLHIRDAQLEDSGTYFCAAEASSGA 96
>pdb|2OMZ|A Chain A, Crystal Structure Of Inla Y369a/hec1 Complex
Length = 466
Score = 31.2 bits (69), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 34/114 (29%), Positives = 52/114 (45%), Gaps = 8/114 (7%)
Query: 74 LVNLQKIYLSRCRISVIDSKAFRGLTNLVDLDFSHNVLQTVPSDTFPDYPSLMKLTLSGN 133
L NL ++ L+ ++ D LTNL DLD ++N + + L +L L N
Sbjct: 219 LTNLDELSLNGNQLK--DIGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGAN 274
Query: 134 PIKQIKTGAFQPLSYLVTLELSKCGIEVIEDAAFVGLDSLEWLKLDNNKITTIS 187
I I L+ L LEL++ +E I + L +L +L L N I+ IS
Sbjct: 275 QISNIS--PLAGLTALTNLELNENQLEDI--SPISNLKNLTYLTLYFNNISDIS 324
>pdb|1O6S|A Chain A, Internalin (Listeria Monocytogenes) E-Cadherin (Human)
Recognition Complex
pdb|1O6T|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|B Chain B, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
Length = 466
Score = 31.2 bits (69), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 34/114 (29%), Positives = 52/114 (45%), Gaps = 8/114 (7%)
Query: 74 LVNLQKIYLSRCRISVIDSKAFRGLTNLVDLDFSHNVLQTVPSDTFPDYPSLMKLTLSGN 133
L NL ++ L+ ++ D LTNL DLD ++N + + L +L L N
Sbjct: 220 LTNLDELSLNGNQLK--DIGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGAN 275
Query: 134 PIKQIKTGAFQPLSYLVTLELSKCGIEVIEDAAFVGLDSLEWLKLDNNKITTIS 187
I I L+ L LEL++ +E I + L +L +L L N I+ IS
Sbjct: 276 QISNIS--PLAGLTALTNLELNENQLEDI--SPISNLKNLTYLTLYFNNISDIS 325
>pdb|2OMT|A Chain A, Crystal Structure Of Inla G194s+sHEC1 COMPLEX
Length = 462
Score = 31.2 bits (69), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 34/114 (29%), Positives = 52/114 (45%), Gaps = 8/114 (7%)
Query: 74 LVNLQKIYLSRCRISVIDSKAFRGLTNLVDLDFSHNVLQTVPSDTFPDYPSLMKLTLSGN 133
L NL ++ L+ ++ D LTNL DLD ++N + + L +L L N
Sbjct: 216 LTNLDELSLNGNQLK--DIGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGAN 271
Query: 134 PIKQIKTGAFQPLSYLVTLELSKCGIEVIEDAAFVGLDSLEWLKLDNNKITTIS 187
I I L+ L LEL++ +E I + L +L +L L N I+ IS
Sbjct: 272 QISNI--SPLAGLTALTNLELNENQLEDI--SPISNLKNLTYLTLYFNNISDIS 321
>pdb|1XWD|C Chain C, Crystal Structure Of Human Follicle Stimulating Hormone
Complexed With Its Receptor
pdb|1XWD|F Chain F, Crystal Structure Of Human Follicle Stimulating Hormone
Complexed With Its Receptor
Length = 252
Score = 30.8 bits (68), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 43/163 (26%), Positives = 72/163 (44%), Gaps = 34/163 (20%)
Query: 54 LDYTGNNLKTLHNEKFQKMGLVNLQKIYLSRCRI-SVIDSKAFRGLTNL--VDLDFSHNV 110
L + L+ + F G +L+KI +S+ + VI++ F L L + ++ ++N+
Sbjct: 35 LRFVLTKLRVIQKGAFSGFG--DLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNL 92
Query: 111 LQTVPSDTFPDYPSLMKLTLSGNPIKQ-------------------------IKTGAFQP 145
L P + F + P+L L +S IK I+ +F
Sbjct: 93 LYINP-EAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVG 151
Query: 146 LSY-LVTLELSKCGIEVIEDAAFVGLDSLEWLKL-DNNKITTI 186
LS+ V L L+K GI+ I + AF G L+ L L DNN + +
Sbjct: 152 LSFESVILWLNKNGIQEIHNCAFNG-TQLDELNLSDNNNLEEL 193
>pdb|1H5B|A Chain A, T Cell Receptor Valpha11 (Av11s5) Domain
Length = 113
Score = 30.8 bits (68), Expect = 2.6, Method: Composition-based stats.
Identities = 21/95 (22%), Positives = 42/95 (44%), Gaps = 6/95 (6%)
Query: 256 QITPSTFYLEIQEGKNVSLLCKVSAIPEAKITWLFDG-----VPIQNESMSASESHAVYS 310
Q+ S L + EG + +L C + + + W + + + E+ + S
Sbjct: 3 QVEQSPSALSLHEGTDSALRCNFTTTMRS-VQWFRQNSRGSLISLFYLASGTKENGRLKS 61
Query: 311 TEEGTEIKKSELLIYNSNIDDNGTFVCVAENQAGS 345
+ + S L I ++ ++D+GT+ C AE +GS
Sbjct: 62 AFDSERARYSTLHIRDAQLEDSGTYFCAAEASSGS 96
>pdb|2OMU|A Chain A, Crystal Structure Of Inla G194s+s Y369s/hec1 Complex
Length = 462
Score = 30.8 bits (68), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 34/114 (29%), Positives = 52/114 (45%), Gaps = 8/114 (7%)
Query: 74 LVNLQKIYLSRCRISVIDSKAFRGLTNLVDLDFSHNVLQTVPSDTFPDYPSLMKLTLSGN 133
L NL ++ L+ ++ D LTNL DLD ++N + + L +L L N
Sbjct: 216 LTNLDELSLNGNQLK--DIGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGAN 271
Query: 134 PIKQIKTGAFQPLSYLVTLELSKCGIEVIEDAAFVGLDSLEWLKLDNNKITTIS 187
I I L+ L LEL++ +E I + L +L +L L N I+ IS
Sbjct: 272 QISNI--SPLAGLTALTNLELNENQLEDI--SPISNLKNLTYLTLYFNNISDIS 321
>pdb|1RHF|A Chain A, Crystal Structure Of Human Tyro3-D1d2
pdb|1RHF|B Chain B, Crystal Structure Of Human Tyro3-D1d2
Length = 182
Score = 30.8 bits (68), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 20/73 (27%), Positives = 34/73 (46%), Gaps = 4/73 (5%)
Query: 264 LEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNES---MSASESHAVYSTEEGTEIKKS 320
L + +G+ V L C V E I W+ DG +QN + SE H + + +++S
Sbjct: 12 LTVSQGQPVKLNCSVEGXEEPDIQWVKDGAVVQNLDQLYIPVSEQHWIGFLSLKS-VERS 70
Query: 321 ELLIYNSNIDDNG 333
+ Y ++D G
Sbjct: 71 DAGRYWCQVEDGG 83
>pdb|3OJM|B Chain B, Crystal Structure Of Fgf1 Complexed With The Ectodomain Of
Fgfr2b Harboring P253r Apert Mutation
Length = 231
Score = 30.8 bits (68), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 24/109 (22%), Positives = 41/109 (37%), Gaps = 14/109 (12%)
Query: 272 VSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSEL-LIYNSNI- 329
V C P + WL +G + E G +++ LI S +
Sbjct: 37 VKFRCPAGGNPMPTMRWLKNGKEFKQEHRIG-----------GYKVRNQHWSLIMESVVP 85
Query: 330 DDNGTFVCVAENQAGSTSSNYTIRIVLKEENVEVVTV-FPLEYVLIVSG 377
D G + CV EN+ GS + Y + +V + + ++ P +V G
Sbjct: 86 SDKGNYTCVVENEYGSINHTYHLDVVERSRHRPILQAGLPANASTVVGG 134
>pdb|3CAF|A Chain A, Crystal Structure Of Hfgfr2 D2 Domain
pdb|3CU1|A Chain A, Crystal Structure Of 2:2:2 Fgfr2d2:fgf1:sos Complex
pdb|3CU1|C Chain C, Crystal Structure Of 2:2:2 Fgfr2d2:fgf1:sos Complex
pdb|3EUU|A Chain A, Crystal Structure Of The Fgfr2 D2 Domain
pdb|3EUU|B Chain B, Crystal Structure Of The Fgfr2 D2 Domain
Length = 100
Score = 30.8 bits (68), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 21/86 (24%), Positives = 33/86 (38%), Gaps = 13/86 (15%)
Query: 272 VSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSEL-LIYNSNI- 329
V C P + WL +G + E G +++ LI S +
Sbjct: 26 VKFRCPAGGNPMPTMRWLKNGKEFKQEHRIG-----------GYKVRNQHWSLIMESVVP 74
Query: 330 DDNGTFVCVAENQAGSTSSNYTIRIV 355
D G + CV EN+ GS + Y + +V
Sbjct: 75 SDKGNYTCVVENEYGSINHTYHLDVV 100
>pdb|1WVZ|A Chain A, Solution Structure Of The D2 Domain Of The Fibroblast
Growth Factor
Length = 104
Score = 30.4 bits (67), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 21/86 (24%), Positives = 33/86 (38%), Gaps = 13/86 (15%)
Query: 272 VSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSEL-LIYNSNI- 329
V C P + WL +G + E G +++ LI S +
Sbjct: 30 VKFRCPAGGNPMPTMRWLKNGKEFKQEHRIG-----------GYKVRNQHWSLIMESVVP 78
Query: 330 DDNGTFVCVAENQAGSTSSNYTIRIV 355
D G + CV EN+ GS + Y + +V
Sbjct: 79 SDKGNYTCVVENEYGSINHTYHLDVV 104
>pdb|1IIL|E Chain E, Crystal Structure Of Pro253arg Apert Mutant Fgf Receptor 2
(Fgfr2) In Complex With Fgf2
pdb|1IIL|F Chain F, Crystal Structure Of Pro253arg Apert Mutant Fgf Receptor 2
(Fgfr2) In Complex With Fgf2
pdb|1IIL|G Chain G, Crystal Structure Of Pro253arg Apert Mutant Fgf Receptor 2
(Fgfr2) In Complex With Fgf2
pdb|1IIL|H Chain H, Crystal Structure Of Pro253arg Apert Mutant Fgf Receptor 2
(Fgfr2) In Complex With Fgf2
Length = 220
Score = 30.4 bits (67), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 24/109 (22%), Positives = 41/109 (37%), Gaps = 14/109 (12%)
Query: 272 VSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSEL-LIYNSNI- 329
V C P + WL +G + E G +++ LI S +
Sbjct: 29 VKFRCPAGGNPMPTMRWLKNGKEFKQEHRIG-----------GYKVRNQHWSLIMESVVP 77
Query: 330 DDNGTFVCVAENQAGSTSSNYTIRIVLKEENVEVVTV-FPLEYVLIVSG 377
D G + CV EN+ GS + Y + +V + + ++ P +V G
Sbjct: 78 SDKGNYTCVVENEYGSINHTYHLDVVERSRHRPILQAGLPANASTVVGG 126
>pdb|3DAR|A Chain A, Crystal Structure Of D2 Domain From Human Fgfr2
pdb|3DAR|B Chain B, Crystal Structure Of D2 Domain From Human Fgfr2
Length = 105
Score = 30.4 bits (67), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 21/86 (24%), Positives = 33/86 (38%), Gaps = 13/86 (15%)
Query: 272 VSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSEL-LIYNSNI- 329
V C P + WL +G + E G +++ LI S +
Sbjct: 31 VKFRCPAGGNPMPTMRWLKNGKEFKQEHRIG-----------GYKVRNQHWSLIMESVVP 79
Query: 330 DDNGTFVCVAENQAGSTSSNYTIRIV 355
D G + CV EN+ GS + Y + +V
Sbjct: 80 SDKGNYTCVVENEYGSINHTYHLDVV 105
>pdb|3OJA|A Chain A, Crystal Structure Of Lrim1APL1C COMPLEX
Length = 487
Score = 30.4 bits (67), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 33/133 (24%), Positives = 54/133 (40%), Gaps = 4/133 (3%)
Query: 80 IYLSRCRISVIDSKAFRGLTNLVDLDFSHNVLQTVP-SDTFPDYPSLMKLTLSGNPIKQI 138
IYL+ +I+++ + + LD N + TV ++ +L L L N I +
Sbjct: 125 IYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV 184
Query: 139 KTGAFQPLSYLVTLELSKCGIEVIEDAAFVGLDSLEWLKLDNNKITTISGSNILPTGLHG 198
K + L TL+LS + + F + W+ L NNK+ I + L
Sbjct: 185 KGQVV--FAKLKTLDLSSNKLAFM-GPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEH 241
Query: 199 IDLHHNPWTCDCL 211
DL N + C L
Sbjct: 242 FDLRGNGFHCGTL 254
Score = 29.3 bits (64), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 28/60 (46%), Gaps = 2/60 (3%)
Query: 127 KLTLSGNPIKQIKTGAFQPLSYLVTLELSKCGIEVIEDAAFVGLDSLEWLKLDNNKITTI 186
+L LSGNP+ QI P + L L LS + E L +L L L+NN + +
Sbjct: 38 ELDLSGNPLSQISAADLAPFTKLELLNLSSNVL--YETLDLESLSTLRTLDLNNNYVQEL 95
>pdb|2FDB|P Chain P, Crystal Structure Of Fibroblast Growth Factor (Fgf)8b In
Complex With Fgf Receptor (Fgfr) 2c
pdb|2FDB|R Chain R, Crystal Structure Of Fibroblast Growth Factor (Fgf)8b In
Complex With Fgf Receptor (Fgfr) 2c
Length = 220
Score = 30.4 bits (67), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 24/109 (22%), Positives = 41/109 (37%), Gaps = 14/109 (12%)
Query: 272 VSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSEL-LIYNSNI- 329
V C P + WL +G + E G +++ LI S +
Sbjct: 27 VKFRCPAGGNPMPTMRWLKNGKEFKQEHRIG-----------GYKVRNQHWSLIMESVVP 75
Query: 330 DDNGTFVCVAENQAGSTSSNYTIRIVLKEENVEVVTV-FPLEYVLIVSG 377
D G + CV EN+ GS + Y + +V + + ++ P +V G
Sbjct: 76 SDKGNYTCVVENEYGSINHTYHLDVVERSRHRPILQAGLPANASTVVGG 124
>pdb|4ECO|A Chain A, Crystal Structure Of A Hypothetical Protein (Bacegg_03329)
From Bacteroides Eggerthii Dsm 20697 At 2.70 A
Resolution
pdb|4ECO|B Chain B, Crystal Structure Of A Hypothetical Protein (Bacegg_03329)
From Bacteroides Eggerthii Dsm 20697 At 2.70 A
Resolution
Length = 636
Score = 30.4 bits (67), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 62/267 (23%), Positives = 99/267 (37%), Gaps = 43/267 (16%)
Query: 46 GMDPNTQVLDYTGNNLKTLHNEKFQKMGLVNLQKIYLSRCRISVIDSKAFRGL------- 98
G + L + N LK + N F + I S I +D K F L
Sbjct: 374 GFTEQVENLSFAHNKLKYIPN-IFDAKSVSVXSAIDFSYNEIGSVDGKNFDPLDPTPFKG 432
Query: 99 TNLVDLDFSHNVLQTVPSDTFPDYPSLMKLTLSGNPIKQIKTGAFQPLSYLVTLELSKCG 158
N+ ++ S+N + P + F L + L GN + +I + +
Sbjct: 433 INVSSINLSNNQISKFPKELFSTGSPLSSINLXGNXLTEIPKNSLKD------------- 479
Query: 159 IEVIEDAAFVGLDSLEWLKLDNNKITTISG---SNILPTGLHGIDLHHNPW--------- 206
E+ F L + L NK+T +S + LP L GIDL +N +
Sbjct: 480 ----ENENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPY-LVGIDLSYNSFSKFPTQPLN 534
Query: 207 --TCDCLLIGLRRWLESTKTPMAIDPICSVPPRLSSVTIKQLSIDELACEPQITPSTFYL 264
T I +R + +T ++ P L+ + I S D +ITP+ L
Sbjct: 535 SSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIG--SNDIRKVNEKITPNISVL 592
Query: 265 EIQEGKNVSL-LCKVSAIPEAKITWLF 290
+I++ N+S+ L V EA LF
Sbjct: 593 DIKDNPNISIDLSYVCPYIEAGXYXLF 619
>pdb|2ENS|A Chain A, Solution Structure Of The Third Ig-Like Domain From Human
Advanced Glycosylation End Product-Specific Receptor
Length = 96
Score = 30.4 bits (67), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 17/28 (60%)
Query: 266 IQEGKNVSLLCKVSAIPEAKITWLFDGV 293
+ G V+L C+V A P +I W+ DGV
Sbjct: 22 VAPGGTVTLTCEVPAQPSPQIHWMKDGV 49
>pdb|2CQV|A Chain A, Solution Structure Of The Eighth Ig-Like Domain Of Human
Myosin Light Chain Kinase
Length = 114
Score = 30.0 bits (66), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 27/103 (26%), Positives = 45/103 (43%), Gaps = 10/103 (9%)
Query: 255 PQITPSTFYLEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEG 314
PQI +++ G++V L KV+ TW+ IQ SE V ++E G
Sbjct: 8 PQIIQFPEDQKVRAGESVELFGKVTGTQPITCTWMKFRKQIQE-----SEHMKVENSENG 62
Query: 315 TEIKKSELLIYNSNIDDNGTFVCVAENQAGSTSSNYTIRIVLK 357
S+L I + + G + + EN+ GS + + +V K
Sbjct: 63 -----SKLTILAARQEHCGCYTLLVENKLGSRQAQVNLTVVDK 100
>pdb|3A79|B Chain B, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
Length = 562
Score = 30.0 bits (66), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 40/152 (26%), Positives = 65/152 (42%), Gaps = 16/152 (10%)
Query: 61 LKTLHNEKFQKMGLVNLQKIYLSRCRISVIDSKAFRGLTNLVDLDFSHNVLQTVPSD-TF 119
LK L Q+ GL N K+ L + +++L LD S N L + D T
Sbjct: 376 LKRLQTLILQRNGLKNFFKVALMT-----------KNMSSLETLDVSLNSLNSHAYDRTC 424
Query: 120 PDYPSLMKLTLSGNPIKQIKTGAFQPLSYLVTLELSKCGIEVIEDAAFVGLDSLEWLKLD 179
S++ L LS N + P ++ L ++ + + +D L +L+ L +
Sbjct: 425 AWAESILVLNLSSNMLTGSVFRCLPPKVKVLDLHNNRI-MSIPKDVT--HLQALQELNVA 481
Query: 180 NNKITTI-SGSNILPTGLHGIDLHHNPWTCDC 210
+N++ ++ G T L I LH NPW C C
Sbjct: 482 SNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTC 513
>pdb|1II4|E Chain E, Crystal Structure Of Ser252trp Apert Mutant Fgf Receptor 2
(Fgfr2) In Complex With Fgf2
pdb|1II4|F Chain F, Crystal Structure Of Ser252trp Apert Mutant Fgf Receptor 2
(Fgfr2) In Complex With Fgf2
pdb|1II4|G Chain G, Crystal Structure Of Ser252trp Apert Mutant Fgf Receptor 2
(Fgfr2) In Complex With Fgf2
pdb|1II4|H Chain H, Crystal Structure Of Ser252trp Apert Mutant Fgf Receptor 2
(Fgfr2) In Complex With Fgf2
Length = 220
Score = 30.0 bits (66), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 21/86 (24%), Positives = 33/86 (38%), Gaps = 13/86 (15%)
Query: 272 VSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSEL-LIYNSNI- 329
V C P + WL +G + E G +++ LI S +
Sbjct: 29 VKFRCPAGGNPMPTMRWLKNGKEFKQEHRIG-----------GYKVRNQHWSLIMESVVP 77
Query: 330 DDNGTFVCVAENQAGSTSSNYTIRIV 355
D G + CV EN+ GS + Y + +V
Sbjct: 78 SDKGNYTCVVENEYGSINHTYHLDVV 103
>pdb|1EV2|E Chain E, Crystal Structure Of Fgf2 In Complex With The
Extracellular Ligand Binding Domain Of Fgf Receptor 2
(Fgfr2)
pdb|1EV2|F Chain F, Crystal Structure Of Fgf2 In Complex With The
Extracellular Ligand Binding Domain Of Fgf Receptor 2
(Fgfr2)
pdb|1EV2|G Chain G, Crystal Structure Of Fgf2 In Complex With The
Extracellular Ligand Binding Domain Of Fgf Receptor 2
(Fgfr2)
pdb|1EV2|H Chain H, Crystal Structure Of Fgf2 In Complex With The
Extracellular Ligand Binding Domain Of Fgf Receptor 2
(Fgfr2)
Length = 220
Score = 30.0 bits (66), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 21/86 (24%), Positives = 33/86 (38%), Gaps = 13/86 (15%)
Query: 272 VSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSEL-LIYNSNI- 329
V C P + WL +G + E G +++ LI S +
Sbjct: 29 VKFRCPAGGNPMPTMRWLKNGKEFKQEHRIG-----------GYKVRNQHWSLIMESVVP 77
Query: 330 DDNGTFVCVAENQAGSTSSNYTIRIV 355
D G + CV EN+ GS + Y + +V
Sbjct: 78 SDKGNYTCVVENEYGSINHTYHLDVV 103
>pdb|3URO|R Chain R, Poliovirus Receptor Cd155 D1d2
Length = 221
Score = 30.0 bits (66), Expect = 5.5, Method: Composition-based stats.
Identities = 17/70 (24%), Positives = 34/70 (48%), Gaps = 1/70 (1%)
Query: 296 QNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCV-AENQAGSTSSNYTIRI 354
Q S S S+ + G E++ + L ++ ++D G++ C+ GS S + +R+
Sbjct: 54 QGPSYSESKRLEFVAARLGAELRDASLRMFGLRVEDEGSYTCLFVTFPQGSRSVDIWLRV 113
Query: 355 VLKEENVEVV 364
+ K +N V
Sbjct: 114 LAKPQNTAEV 123
>pdb|3EPC|R Chain R, Cryoem Structure Of Poliovirus Receptor Bound To
Poliovirus Type 1
pdb|3EPD|R Chain R, Cryoem Structure Of Poliovirus Receptor Bound To
Poliovirus Type 3
pdb|3EPF|R Chain R, Cryoem Structure Of Poliovirus Receptor Bound To
Poliovirus Type 2
Length = 213
Score = 30.0 bits (66), Expect = 5.6, Method: Composition-based stats.
Identities = 17/70 (24%), Positives = 34/70 (48%), Gaps = 1/70 (1%)
Query: 296 QNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCV-AENQAGSTSSNYTIRI 354
Q S S S+ + G E++ + L ++ ++D G++ C+ GS S + +R+
Sbjct: 53 QGPSYSESKRLEFVAARLGAELRDASLRMFGLRVEDEGSYTCLFVTFPQGSRSVDIWLRV 112
Query: 355 VLKEENVEVV 364
+ K +N V
Sbjct: 113 LAKPQNTAEV 122
>pdb|1E0O|B Chain B, Crystal Structure Of A Ternary Fgf1-Fgfr2-Heparin Complex
pdb|1E0O|D Chain D, Crystal Structure Of A Ternary Fgf1-Fgfr2-Heparin Complex
Length = 219
Score = 29.6 bits (65), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 21/86 (24%), Positives = 33/86 (38%), Gaps = 13/86 (15%)
Query: 272 VSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSEL-LIYNSNI- 329
V C P + WL +G + E G +++ LI S +
Sbjct: 28 VKFRCPAGGNPMPTMRWLKNGKEFKQEHRIG-----------GYKVRNQHWSLIMESVVP 76
Query: 330 DDNGTFVCVAENQAGSTSSNYTIRIV 355
D G + CV EN+ GS + Y + +V
Sbjct: 77 SDKGNYTCVVENEYGSINHTYHLDVV 102
>pdb|1NUN|B Chain B, Crystal Structure Analysis Of The Fgf10-fgfr2b Complex
Length = 230
Score = 29.6 bits (65), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 21/109 (19%), Positives = 39/109 (35%), Gaps = 14/109 (12%)
Query: 272 VSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNI-- 329
V C P WL +G + E G +++ + ++
Sbjct: 36 VKFRCPAGGNPXPTXRWLKNGKEFKQEHRIG-----------GYKVRNQHWSLIXESVVP 84
Query: 330 DDNGTFVCVAENQAGSTSSNYTIRIVLKEENVEVVTV-FPLEYVLIVSG 377
D G + CV EN+ GS + Y + +V + + ++ P +V G
Sbjct: 85 SDKGNYTCVVENEYGSINHTYHLDVVERSPHRPILQAGLPANASTVVGG 133
>pdb|2LE9|A Chain A, Ragec2-S100a13 Tetrameric Complex
pdb|2LE9|D Chain D, Ragec2-S100a13 Tetrameric Complex
Length = 93
Score = 29.6 bits (65), Expect = 7.2, Method: Composition-based stats.
Identities = 15/50 (30%), Positives = 24/50 (48%)
Query: 266 IQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGT 315
+ G V+L C+V A P +I W+ DGVP+ + ++GT
Sbjct: 15 VAPGGTVTLTCEVPAQPSPQIHWMKDGVPLPLPPSPVLILPEIGPQDQGT 64
>pdb|1DJS|A Chain A, Ligand-binding Portion Of Fibroblast Growth Factor
Receptor 2 In Complex With Fgf1
Length = 216
Score = 29.3 bits (64), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 18/86 (20%), Positives = 31/86 (36%), Gaps = 13/86 (15%)
Query: 272 VSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNI-- 329
V C P WL +G + E G +++ + ++
Sbjct: 29 VKFRCPAGGNPXPTXRWLKNGKEFKQEHRIG-----------GYKVRNQHWSLIXESVVP 77
Query: 330 DDNGTFVCVAENQAGSTSSNYTIRIV 355
D G + CV EN+ GS + Y + +V
Sbjct: 78 SDKGNYTCVVENEYGSINHTYHLDVV 103
>pdb|3QIU|C Chain C, Crystal Structure Of The 226 Tcr In Complex With MccI-Ek
pdb|3QIW|C Chain C, Crystal Structure Of The 226 Tcr In Complex With
Mcc-P5eI-Ek
Length = 205
Score = 29.3 bits (64), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 25/102 (24%), Positives = 39/102 (38%), Gaps = 23/102 (22%)
Query: 256 QITPSTFYLEIQEGKNVSLLCKVSAIPEA-------------KITWLFDGVPIQNESMSA 302
Q+ S L + EG +L C + A + +L G SA
Sbjct: 5 QVEQSPSALSLHEGTGSALRCNFTTTMRAVQWFRKNSRGSLINLFYLASGTKENGRLKSA 64
Query: 303 SESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCVAENQAG 344
+S YST L I ++ ++D+GT+ C AE +G
Sbjct: 65 FDSKERYST----------LHIRDAQLEDSGTYFCAAEPSSG 96
>pdb|3O53|A Chain A, Crystal Structure Of Lrim1 Leucine-Rich Repeat Domain
pdb|3O53|B Chain B, Crystal Structure Of Lrim1 Leucine-Rich Repeat Domain
Length = 317
Score = 29.3 bits (64), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 28/60 (46%), Gaps = 2/60 (3%)
Query: 127 KLTLSGNPIKQIKTGAFQPLSYLVTLELSKCGIEVIEDAAFVGLDSLEWLKLDNNKITTI 186
+L LSGNP+ QI P + L L LS + E L +L L L+NN + +
Sbjct: 38 ELDLSGNPLSQISAADLAPFTKLELLNLSSNVL--YETLDLESLSTLRTLDLNNNYVQEL 95
>pdb|1AHW|A Chain A, A Complex Of Extracellular Domain Of Tissue Factor With An
Inhibitory Fab (5g9)
pdb|1AHW|D Chain D, A Complex Of Extracellular Domain Of Tissue Factor With An
Inhibitory Fab (5g9)
pdb|1FGN|L Chain L, Monoclonal Murine Antibody 5g9-Anti-Human Tissue Factor
Length = 214
Score = 29.3 bits (64), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 32/138 (23%), Positives = 51/138 (36%), Gaps = 34/138 (24%)
Query: 258 TPSTFYLEIQEGKNVSLLCKVSAIPEAKITW------------------LFDGVPIQNES 299
+PS+ Y + G+ V++ CK S + W L DGVP +
Sbjct: 7 SPSSMYASL--GERVTITCKASQDIRKYLNWYQQKPWKSPKTLIYYATSLADGVPSR--- 61
Query: 300 MSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCVAENQAGSTSSNYTIRIVLKEE 359
S S S YS L I + DD T+ C+ ++ T T + + +
Sbjct: 62 FSGSGSGQDYS-----------LTISSLESDDTATYYCLQHGESPYTFGGGTKLEINRAD 110
Query: 360 NVEVVTVFPLEYVLIVSG 377
V++FP + SG
Sbjct: 111 AAPTVSIFPPSSEQLTSG 128
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.315 0.131 0.389
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 21,251,432
Number of Sequences: 62578
Number of extensions: 874495
Number of successful extensions: 2961
Number of sequences better than 100.0: 226
Number of HSP's better than 100.0 without gapping: 107
Number of HSP's successfully gapped in prelim test: 119
Number of HSP's that attempted gapping in prelim test: 2303
Number of HSP's gapped (non-prelim): 480
length of query: 767
length of database: 14,973,337
effective HSP length: 106
effective length of query: 661
effective length of database: 8,340,069
effective search space: 5512785609
effective search space used: 5512785609
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.8 bits)