Query psy12044
Match_columns 767
No_of_seqs 561 out of 3323
Neff 7.5
Searched_HMMs 29240
Date Fri Aug 16 17:11:58 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy12044.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/12044hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3zyj_A Leucine-rich repeat-con 100.0 3E-38 1E-42 356.3 26.1 329 15-358 32-435 (440)
2 3zyi_A Leucine-rich repeat-con 100.0 6E-38 2E-42 355.1 25.2 329 15-359 43-446 (452)
3 2xot_A Amphoterin-induced prot 100.0 6E-37 2.1E-41 337.0 20.0 319 14-355 8-336 (361)
4 2id5_A Lingo-1, leucine rich r 100.0 3.3E-33 1.1E-37 317.8 23.7 324 16-354 1-475 (477)
5 2v9t_B SLIT homolog 2 protein 100.0 6E-29 2.1E-33 254.3 17.8 210 15-254 2-211 (220)
6 2v70_A SLIT-2, SLIT homolog 2 100.0 5.7E-28 1.9E-32 247.1 16.6 211 15-255 2-213 (220)
7 1ozn_A Reticulon 4 receptor; N 99.9 3.6E-27 1.2E-31 249.8 19.3 233 17-253 1-284 (285)
8 3m19_A Variable lymphocyte rec 99.9 5.9E-27 2E-31 243.9 19.2 203 16-222 2-208 (251)
9 1p9a_G Platelet glycoprotein I 99.9 5.6E-25 1.9E-29 234.4 20.6 200 21-222 3-223 (290)
10 2z66_A Variable lymphocyte rec 99.9 1.9E-25 6.6E-30 238.8 16.9 224 18-247 1-303 (306)
11 2o6q_A Variable lymphocyte rec 99.9 3.8E-24 1.3E-28 225.1 22.0 223 20-250 10-261 (270)
12 2z80_A TOLL-like receptor 2, v 99.9 4.1E-24 1.4E-28 233.4 17.5 219 13-236 19-344 (353)
13 1w8a_A SLIT protein; signaling 99.9 7.8E-24 2.7E-28 211.6 17.8 187 17-256 1-187 (192)
14 2wfh_A SLIT homolog 2 protein 99.9 7.5E-24 2.6E-28 212.1 16.7 184 16-254 2-185 (193)
15 2ifg_A High affinity nerve gro 99.9 9E-24 3.1E-28 230.0 17.2 232 103-355 12-248 (347)
16 2z62_A TOLL-like receptor 4, v 99.9 1.8E-23 6.1E-28 220.3 18.5 213 20-236 1-267 (276)
17 2o6s_A Variable lymphocyte rec 99.9 2.4E-23 8.2E-28 210.0 15.6 161 18-184 1-161 (208)
18 3e6j_A Variable lymphocyte rec 99.9 3.1E-22 1.1E-26 205.6 19.0 175 17-222 12-188 (229)
19 2ifg_A High affinity nerve gro 99.9 5.8E-23 2E-27 223.6 10.2 313 18-354 1-343 (347)
20 2xwt_C Thyrotropin receptor; s 99.9 2.1E-22 7.1E-27 207.6 13.1 183 16-207 2-193 (239)
21 3vq2_A TLR4, TOLL-like recepto 99.9 3.8E-22 1.3E-26 233.1 15.3 217 31-249 379-602 (606)
22 4g8a_A TOLL-like receptor 4; l 99.9 1.2E-21 4.1E-26 228.7 18.4 217 33-254 402-626 (635)
23 4g8a_A TOLL-like receptor 4; l 99.9 2.6E-21 8.8E-26 226.0 15.9 188 16-207 21-214 (635)
24 1ziw_A TOLL-like receptor 3; i 99.8 2.2E-21 7.6E-26 229.9 13.0 182 74-255 479-674 (680)
25 3rfs_A Internalin B, repeat mo 99.8 5.5E-20 1.9E-24 193.6 19.4 188 30-221 43-233 (272)
26 1xku_A Decorin; proteoglycan, 99.8 3.2E-20 1.1E-24 200.5 17.6 185 13-208 20-206 (330)
27 2o6r_A Variable lymphocyte rec 99.8 3.9E-20 1.3E-24 181.7 16.1 165 18-235 1-166 (177)
28 2ft3_A Biglycan; proteoglycan, 99.8 4.3E-20 1.5E-24 199.8 17.7 181 15-207 24-206 (332)
29 3v47_A TOLL-like receptor 5B a 99.8 5.6E-20 1.9E-24 206.9 15.8 162 75-236 275-438 (455)
30 2z7x_B TOLL-like receptor 1, v 99.8 1E-19 3.4E-24 208.7 18.2 200 32-236 306-511 (520)
31 3t6q_A CD180 antigen; protein- 99.8 2E-20 6.7E-25 218.6 12.1 197 49-248 400-603 (606)
32 3v47_A TOLL-like receptor 5B a 99.8 5.1E-20 1.8E-24 207.3 15.1 167 16-189 2-172 (455)
33 3t6q_A CD180 antigen; protein- 99.8 4.9E-20 1.7E-24 215.3 14.1 189 16-208 2-193 (606)
34 4ay9_X Follicle-stimulating ho 99.8 5.7E-20 2E-24 200.7 13.2 184 17-206 1-190 (350)
35 3vq2_A TLR4, TOLL-like recepto 99.8 3.4E-19 1.2E-23 208.2 18.9 185 19-207 4-194 (606)
36 3a79_B TLR6, VLRB.59, TOLL-lik 99.8 8.6E-19 2.9E-23 203.3 20.8 189 32-225 335-529 (562)
37 3j0a_A TOLL-like receptor 5; m 99.8 2.4E-19 8.2E-24 218.1 16.4 214 31-246 269-602 (844)
38 1ziw_A TOLL-like receptor 3; i 99.8 2.9E-19 9.8E-24 211.7 15.7 182 21-208 1-185 (680)
39 2o6s_A Variable lymphocyte rec 99.8 2.8E-18 9.7E-23 172.7 18.7 167 52-223 10-178 (208)
40 1ogq_A PGIP-2, polygalacturona 99.8 5.7E-19 1.9E-23 189.8 11.3 181 20-207 32-234 (313)
41 2z63_A TOLL-like receptor 4, v 99.8 7.9E-19 2.7E-23 203.0 13.0 203 31-236 350-561 (570)
42 2z63_A TOLL-like receptor 4, v 99.8 1.6E-18 5.4E-23 200.5 14.8 184 21-208 2-191 (570)
43 2z81_A CD282 antigen, TOLL-lik 99.8 1.3E-18 4.6E-23 200.5 12.7 181 22-207 2-185 (549)
44 2z81_A CD282 antigen, TOLL-lik 99.7 6.4E-18 2.2E-22 194.8 15.9 201 30-235 312-539 (549)
45 3m19_A Variable lymphocyte rec 99.7 3.2E-17 1.1E-21 170.2 19.1 153 50-207 15-168 (251)
46 1xku_A Decorin; proteoglycan, 99.7 3.2E-17 1.1E-21 176.9 17.7 172 31-207 103-276 (330)
47 1ogq_A PGIP-2, polygalacturona 99.7 5.3E-18 1.8E-22 182.2 10.8 175 30-208 103-282 (313)
48 2o6q_A Variable lymphocyte rec 99.7 4E-17 1.4E-21 171.4 16.8 167 22-207 3-170 (270)
49 3j0a_A TOLL-like receptor 5; m 99.7 1.2E-17 4.2E-22 203.0 14.8 180 21-207 1-187 (844)
50 3o53_A Protein LRIM1, AGAP0063 99.7 9.1E-18 3.1E-22 180.6 11.2 175 32-216 84-259 (317)
51 3a79_B TLR6, VLRB.59, TOLL-lik 99.7 9.7E-18 3.3E-22 194.5 12.1 162 11-183 17-181 (562)
52 2xwt_C Thyrotropin receptor; s 99.7 3.1E-17 1E-21 168.8 13.8 173 30-207 33-218 (239)
53 3oja_A Leucine-rich immune mol 99.7 1.2E-17 4E-22 190.8 11.4 159 49-215 99-258 (487)
54 3rfs_A Internalin B, repeat mo 99.7 4.3E-17 1.5E-21 171.4 14.9 171 30-208 65-236 (272)
55 2ft3_A Biglycan; proteoglycan, 99.7 4.8E-17 1.6E-21 175.8 14.6 170 32-207 106-277 (332)
56 1wwl_A Monocyte differentiatio 99.7 2.1E-17 7E-22 177.4 11.1 155 50-207 96-266 (312)
57 4fcg_A Uncharacterized protein 99.7 5.8E-17 2E-21 175.4 13.7 174 29-208 82-267 (328)
58 3oja_B Anopheles plasmodium-re 99.7 2.9E-16 1E-20 183.6 20.5 131 30-162 53-186 (597)
59 3o6n_A APL1; leucine-rich repe 99.7 2E-16 7E-21 174.6 18.0 177 30-208 47-286 (390)
60 3g39_A Variable lymphocyte rec 99.7 8.5E-17 2.9E-21 157.3 12.7 115 17-137 2-116 (170)
61 3o6n_A APL1; leucine-rich repe 99.7 1.5E-16 5E-21 175.8 16.0 171 33-207 28-199 (390)
62 4fcg_A Uncharacterized protein 99.7 1.2E-16 4.2E-21 172.8 14.8 155 48-208 80-243 (328)
63 3rgz_A Protein brassinosteroid 99.7 5.1E-17 1.7E-21 195.6 13.0 178 30-209 444-695 (768)
64 3oja_B Anopheles plasmodium-re 99.7 1.7E-16 5.8E-21 185.6 16.3 172 32-207 33-205 (597)
65 2xot_A Amphoterin-induced prot 99.7 1.1E-16 3.8E-21 175.4 13.8 152 52-208 21-177 (361)
66 1ozn_A Reticulon 4 receptor; N 99.7 8.1E-17 2.8E-21 170.0 11.7 159 50-210 106-264 (285)
67 2v9t_B SLIT homolog 2 protein 99.7 2.5E-16 8.7E-21 160.5 14.4 132 52-188 14-145 (220)
68 3rgz_A Protein brassinosteroid 99.7 1.1E-16 3.8E-21 192.6 13.2 178 30-209 468-719 (768)
69 2r9u_A Variable lymphocyte rec 99.7 2.6E-16 8.7E-21 154.6 13.3 119 14-138 2-120 (174)
70 1h6u_A Internalin H; cell adhe 99.7 5E-16 1.7E-20 166.5 16.5 166 30-209 43-210 (308)
71 1wwl_A Monocyte differentiatio 99.7 6.1E-17 2.1E-21 173.7 9.3 175 30-207 97-287 (312)
72 1h6u_A Internalin H; cell adhe 99.7 3.1E-16 1.1E-20 168.0 13.7 165 30-208 65-231 (308)
73 1p9a_G Platelet glycoprotein I 99.7 4.7E-16 1.6E-20 165.3 14.9 151 49-207 10-161 (290)
74 4ecn_A Leucine-rich repeat pro 99.7 1E-16 3.5E-21 194.1 9.6 117 91-207 440-586 (876)
75 4ezg_A Putative uncharacterize 99.7 4.7E-16 1.6E-20 155.3 12.6 151 48-207 43-194 (197)
76 1h6t_A Internalin B; cell adhe 99.6 5.1E-16 1.7E-20 165.1 13.4 165 31-208 49-214 (291)
77 3g39_A Variable lymphocyte rec 99.6 1.3E-15 4.4E-20 148.9 13.6 120 101-223 11-132 (170)
78 1xeu_A Internalin C; cellular 99.6 9.3E-16 3.2E-20 160.7 13.3 162 34-209 25-187 (263)
79 4eco_A Uncharacterized protein 99.6 3E-16 1E-20 184.9 10.3 117 91-207 198-343 (636)
80 2z7x_B TOLL-like receptor 1, v 99.6 6.6E-16 2.3E-20 176.9 12.6 145 31-183 3-150 (520)
81 2v70_A SLIT-2, SLIT homolog 2 99.6 1.5E-15 5.1E-20 154.7 13.6 132 52-188 14-146 (220)
82 4glp_A Monocyte differentiatio 99.6 5.4E-16 1.8E-20 166.1 10.0 157 49-207 91-264 (310)
83 2ell_A Acidic leucine-rich nuc 99.6 1.1E-15 3.8E-20 148.3 10.4 144 42-189 17-165 (168)
84 4eco_A Uncharacterized protein 99.6 3.4E-15 1.2E-19 175.9 16.7 153 50-208 434-601 (636)
85 3cvr_A Invasion plasmid antige 99.6 3.7E-15 1.3E-19 172.7 16.0 154 29-207 60-220 (571)
86 2z62_A TOLL-like receptor 4, v 99.6 3.1E-15 1.1E-19 157.1 13.3 133 30-164 30-166 (276)
87 4fmz_A Internalin; leucine ric 99.6 6.3E-15 2.2E-19 159.6 16.0 167 31-209 158-326 (347)
88 3zyj_A Leucine-rich repeat-con 99.6 2.8E-15 9.5E-20 168.5 13.7 153 50-207 44-198 (440)
89 3cvr_A Invasion plasmid antige 99.6 3.6E-15 1.2E-19 172.8 14.9 157 30-209 82-245 (571)
90 3zyi_A Leucine-rich repeat-con 99.6 4.6E-15 1.6E-19 167.3 15.5 154 50-208 55-210 (452)
91 4glp_A Monocyte differentiatio 99.6 2.6E-15 8.7E-20 160.8 12.2 159 50-208 65-238 (310)
92 3oja_A Leucine-rich immune mol 99.6 6.8E-16 2.3E-20 176.2 7.7 175 31-211 102-286 (487)
93 3e6j_A Variable lymphocyte rec 99.6 8.5E-15 2.9E-19 150.0 15.1 128 77-207 21-148 (229)
94 2z66_A Variable lymphocyte rec 99.6 1.3E-15 4.6E-20 162.3 9.3 178 31-210 104-290 (306)
95 3o53_A Protein LRIM1, AGAP0063 99.6 1.1E-15 3.9E-20 164.1 8.8 170 33-207 15-204 (317)
96 2z80_A TOLL-like receptor 2, v 99.6 2.1E-15 7.1E-20 164.3 11.0 151 53-208 35-188 (353)
97 1m9s_A Internalin B; cell inva 99.6 3.2E-15 1.1E-19 174.7 13.3 164 31-207 46-210 (605)
98 3g06_A SSPH2 (leucine-rich rep 99.6 4.2E-15 1.4E-19 174.1 14.2 165 17-207 30-194 (622)
99 2r9u_A Variable lymphocyte rec 99.6 8E-15 2.7E-19 143.9 13.1 119 102-223 15-135 (174)
100 1h6t_A Internalin B; cell adhe 99.6 1.1E-14 3.7E-19 154.8 14.6 148 48-208 45-192 (291)
101 4ezg_A Putative uncharacterize 99.6 6.7E-15 2.3E-19 146.9 11.7 147 30-185 46-195 (197)
102 2id5_A Lingo-1, leucine rich r 99.6 7.9E-15 2.7E-19 166.2 12.9 137 76-212 225-361 (477)
103 4ecn_A Leucine-rich repeat pro 99.6 8.6E-15 2.9E-19 177.3 12.7 173 30-208 450-658 (876)
104 2ell_A Acidic leucine-rich nuc 99.5 9.3E-15 3.2E-19 141.8 8.7 132 74-207 23-160 (168)
105 1o6v_A Internalin A; bacterial 99.5 4.1E-14 1.4E-18 160.1 14.6 169 30-211 201-370 (466)
106 1m9s_A Internalin B; cell inva 99.5 3.1E-14 1.1E-18 166.4 13.7 148 48-208 42-189 (605)
107 3bz5_A Internalin-J, INLJ; leu 99.5 1.3E-13 4.4E-18 156.0 17.6 160 30-208 44-205 (457)
108 1o6v_A Internalin A; bacterial 99.5 1.1E-13 3.8E-18 156.5 16.6 167 30-209 179-346 (466)
109 1xeu_A Internalin C; cellular 99.5 1.1E-14 3.6E-19 152.6 7.4 148 48-209 18-165 (263)
110 2je0_A Acidic leucine-rich nuc 99.5 1.5E-14 5.1E-19 137.4 7.0 127 49-179 17-148 (149)
111 4fmz_A Internalin; leucine ric 99.5 1.9E-13 6.5E-18 147.9 16.6 167 30-208 46-213 (347)
112 2o6r_A Variable lymphocyte rec 99.5 1.5E-13 5.2E-18 134.5 13.8 110 77-189 9-118 (177)
113 2je0_A Acidic leucine-rich nuc 99.5 2.7E-14 9.1E-19 135.7 8.1 128 74-203 16-149 (149)
114 3bz5_A Internalin-J, INLJ; leu 99.5 3E-13 1E-17 153.0 18.0 160 30-207 66-225 (457)
115 1a9n_A U2A', U2A'; complex (nu 99.5 4.6E-14 1.6E-18 138.2 8.4 130 49-183 19-152 (176)
116 4ay9_X Follicle-stimulating ho 99.5 2.2E-13 7.6E-18 148.4 13.7 175 30-207 32-215 (350)
117 3g06_A SSPH2 (leucine-rich rep 99.5 5.1E-13 1.7E-17 156.5 16.7 78 123-208 221-298 (622)
118 1w8a_A SLIT protein; signaling 99.5 2.5E-13 8.5E-18 135.2 12.0 109 78-189 11-120 (192)
119 1a9n_A U2A', U2A'; complex (nu 99.5 7.8E-14 2.7E-18 136.6 8.1 131 73-207 17-153 (176)
120 1jl5_A Outer protein YOPM; leu 99.4 1.3E-12 4.4E-17 147.7 17.1 156 30-207 73-228 (454)
121 2wfh_A SLIT homolog 2 protein 99.4 7.5E-13 2.6E-17 131.9 13.0 108 78-189 13-120 (193)
122 2ca6_A RAN GTPase-activating p 99.4 2.2E-14 7.6E-19 158.1 1.1 157 49-207 94-287 (386)
123 1jl5_A Outer protein YOPM; leu 99.4 2.3E-12 7.7E-17 145.6 17.2 159 30-208 93-251 (454)
124 3rfe_A Platelet glycoprotein I 99.4 6.6E-13 2.3E-17 123.9 8.8 55 199-253 60-115 (130)
125 4b8c_D Glucose-repressible alc 99.4 2E-13 6.9E-18 163.1 6.2 117 66-188 217-333 (727)
126 4b8c_D Glucose-repressible alc 99.4 4E-13 1.4E-17 160.5 8.7 157 49-209 173-331 (727)
127 3goz_A Leucine-rich repeat-con 99.4 1.1E-13 3.9E-18 151.3 2.3 158 48-207 21-209 (362)
128 2ast_B S-phase kinase-associat 99.4 1.1E-13 3.6E-18 149.1 1.5 174 30-206 49-234 (336)
129 3goz_A Leucine-rich repeat-con 99.3 1.8E-13 6.1E-18 149.8 1.8 179 30-208 24-239 (362)
130 3sb4_A Hypothetical leucine ri 99.3 4.8E-12 1.6E-16 136.5 10.6 155 48-207 48-310 (329)
131 2ca6_A RAN GTPase-activating p 99.3 3.2E-13 1.1E-17 148.8 0.9 176 31-208 35-258 (386)
132 1dce_A Protein (RAB geranylger 99.3 6.3E-12 2.2E-16 145.8 11.8 148 49-201 409-567 (567)
133 1dce_A Protein (RAB geranylger 99.3 6.1E-12 2.1E-16 146.0 11.4 166 37-209 358-548 (567)
134 2ast_B S-phase kinase-associat 99.3 3.5E-13 1.2E-17 145.1 0.4 174 30-205 72-258 (336)
135 1ds9_A Outer arm dynein; leuci 99.3 2.6E-14 8.8E-19 142.8 -9.2 108 74-186 47-155 (198)
136 3sb4_A Hypothetical leucine ri 99.3 1.8E-11 6.3E-16 131.9 12.1 102 98-201 225-328 (329)
137 1z7x_W Ribonuclease inhibitor; 99.2 8.7E-13 3E-17 148.2 -3.9 176 30-207 172-383 (461)
138 1ds9_A Outer arm dynein; leuci 99.2 1.5E-13 5.2E-18 137.1 -9.2 134 74-212 17-158 (198)
139 1z7x_W Ribonuclease inhibitor; 99.1 2.7E-12 9.3E-17 144.2 -1.7 134 49-184 28-183 (461)
140 3un9_A NLR family member X1; l 99.1 4.4E-12 1.5E-16 139.6 -4.8 163 46-208 69-253 (372)
141 4fdw_A Leucine rich hypothetic 98.9 3.9E-09 1.3E-13 117.2 13.4 163 33-204 162-333 (401)
142 4fdw_A Leucine rich hypothetic 98.9 7.8E-09 2.7E-13 114.7 12.3 158 39-204 145-310 (401)
143 3un9_A NLR family member X1; l 98.8 3E-10 1E-14 124.9 -0.5 155 31-186 75-254 (372)
144 3ogk_B Coronatine-insensitive 98.6 1.8E-09 6.1E-14 125.1 -2.6 157 48-207 317-501 (592)
145 3knb_B Obscurin-like protein 1 98.5 4.5E-08 1.5E-12 87.5 4.5 91 255-355 14-104 (107)
146 3knb_A Titin; IG-like, titin, 98.5 5.2E-08 1.8E-12 85.9 4.8 91 257-355 8-98 (100)
147 3ogk_B Coronatine-insensitive 98.5 1E-08 3.5E-13 118.7 -0.9 130 49-180 112-252 (592)
148 2p1m_B Transport inhibitor res 98.5 1.8E-08 6.2E-13 116.6 -0.4 85 121-206 430-518 (594)
149 2kdg_A Myotilin; immonoglobuli 98.4 2.8E-07 9.6E-12 80.1 5.4 91 257-356 8-98 (100)
150 1wit_A Twitchin 18TH IGSF modu 98.4 2.1E-07 7.2E-12 80.1 4.4 82 261-354 9-92 (93)
151 2kkq_A Myotilin; unknown funct 98.4 8.1E-07 2.8E-11 80.2 8.4 95 255-357 16-110 (116)
152 2cqv_A MLCK, myosin light chai 98.4 5.2E-07 1.8E-11 80.8 6.9 94 255-358 8-101 (114)
153 2p1m_B Transport inhibitor res 98.4 6.7E-08 2.3E-12 111.8 1.1 131 48-181 104-245 (594)
154 2edj_A Roundabout homolog 2; K 98.3 8.9E-07 3.1E-11 77.0 7.4 85 260-356 14-98 (100)
155 2dm2_A Palladin; beta-sandwich 98.3 1E-06 3.4E-11 78.3 7.7 95 255-357 9-103 (110)
156 3qp3_A Titin; I-SET IG-like, s 98.3 2.7E-07 9.3E-12 80.8 3.8 93 254-356 8-100 (103)
157 2dm3_A KIAA0992 protein, palla 98.3 4.3E-07 1.5E-11 80.5 5.0 95 255-358 10-104 (110)
158 1g1c_A Immunoglobulin-like dom 98.3 3.2E-07 1.1E-11 79.6 4.0 87 260-355 11-97 (99)
159 2yr3_A Myosin light chain kina 98.3 4E-07 1.4E-11 79.1 4.6 85 257-354 14-98 (99)
160 3cx2_A Myosin-binding protein 98.3 1.1E-06 3.9E-11 77.9 7.6 95 257-355 7-107 (108)
161 3kvq_A Vascular endothelial gr 98.3 8.3E-07 2.8E-11 78.2 6.0 91 255-357 11-101 (108)
162 2eo9_A Roundabout homolog 1; b 98.3 1.9E-06 6.4E-11 77.6 8.1 92 255-358 9-100 (118)
163 1gxe_A Myosin binding protein 98.3 1.2E-06 4.2E-11 82.2 7.0 91 261-354 25-137 (139)
164 2ra8_A Uncharacterized protein 98.2 5.2E-07 1.8E-11 98.5 4.7 154 48-207 138-320 (362)
165 1nct_A Titin; cell adhesion, g 98.2 7.6E-07 2.6E-11 79.0 4.7 90 255-354 15-104 (106)
166 1u2h_A APEG-1, aortic preferen 98.2 6.8E-07 2.3E-11 77.5 4.2 86 261-355 12-97 (99)
167 1wwb_X Protein (brain derived 98.2 1.1E-06 3.8E-11 77.5 5.7 83 268-355 15-97 (103)
168 2ckn_A Basic fibroblast growth 98.2 1.1E-06 3.8E-11 76.0 5.5 83 257-354 12-94 (95)
169 2e7c_A Myosin-binding protein 98.2 2.4E-06 8.4E-11 76.9 7.1 84 262-356 32-115 (118)
170 3puc_A Titin; I-SET IG-like do 98.2 1.1E-06 3.6E-11 76.1 4.0 86 260-355 12-97 (99)
171 3irg_A Titin; IG-like, titin, 98.1 1.6E-06 5.6E-11 74.9 4.8 89 258-354 9-97 (100)
172 2bk8_A Connectin, M1, titin he 98.1 2.6E-06 8.8E-11 73.7 6.0 85 260-354 7-92 (97)
173 4h09_A Hypothetical leucine ri 98.1 1.1E-05 3.8E-10 88.0 12.4 124 74-201 216-340 (379)
174 3irg_B Obscurin-like protein 1 98.1 1.6E-06 5.6E-11 76.2 4.4 91 255-355 14-104 (107)
175 3caf_A Fibroblast growth facto 98.1 2.1E-06 7.1E-11 74.6 4.8 83 263-354 17-99 (100)
176 1he7_A High affinity nerve gro 98.1 2.6E-06 9E-11 78.4 5.3 85 268-357 14-100 (126)
177 2ens_A Advanced glycosylation 98.1 3E-06 1E-10 73.3 5.2 75 262-355 18-92 (96)
178 3m45_A Cell adhesion molecule 98.1 5.6E-06 1.9E-10 72.5 7.1 96 257-355 9-105 (108)
179 2edn_A Myosin-binding protein 98.1 7.8E-06 2.7E-10 74.4 8.0 93 260-356 18-116 (118)
180 2yuz_A Myosin-binding protein 98.1 8.4E-06 2.9E-10 71.5 7.9 85 257-355 10-94 (100)
181 2dav_A SLOW MYBP-C, myosin-bin 98.1 6.6E-06 2.3E-10 75.8 7.3 96 257-356 10-111 (126)
182 3bfo_A Mucosa-associated lymph 98.0 5.2E-06 1.8E-10 71.0 5.9 68 261-347 10-77 (91)
183 3so5_A LIG-3, leucine-rich rep 98.0 3.4E-06 1.2E-10 74.0 4.9 98 255-354 11-111 (112)
184 1io0_A Tropomodulin; LRR prote 98.0 9E-07 3.1E-11 87.1 1.1 111 74-184 35-164 (185)
185 2ra8_A Uncharacterized protein 98.0 3.6E-06 1.2E-10 91.9 5.8 132 48-185 171-321 (362)
186 1fhg_A Telokin; immunoglobulin 98.0 3E-06 1E-10 80.3 4.3 94 255-357 42-135 (154)
187 4gt6_A Cell surface protein; l 98.0 1.6E-05 5.4E-10 87.5 10.1 136 62-205 254-389 (394)
188 3s35_X Vascular endothelial gr 98.0 5.5E-06 1.9E-10 74.8 5.4 92 264-357 18-111 (122)
189 2cr3_A Basic fibroblast growth 98.0 5.8E-06 2E-10 72.0 4.7 80 261-355 10-89 (99)
190 4hwu_A Fibroblast growth facto 97.9 1.3E-05 4.4E-10 69.0 6.1 78 262-355 9-86 (95)
191 1gl4_B Basement membrane-speci 97.9 1E-05 3.6E-10 69.9 5.5 78 262-354 18-96 (98)
192 3rw6_A Nuclear RNA export fact 97.9 2.4E-06 8.1E-11 89.1 0.9 81 96-177 167-257 (267)
193 3rbg_A Cytotoxic and regulator 97.9 1.2E-05 4.1E-10 73.1 5.6 94 260-356 7-101 (124)
194 2lu7_A Obscurin-like protein 1 97.9 1.7E-05 5.7E-10 67.4 6.1 69 263-342 5-73 (84)
195 1io0_A Tropomodulin; LRR prote 97.9 1.4E-06 4.6E-11 85.8 -1.0 118 92-209 29-166 (185)
196 1x44_A Myosin-binding protein 97.9 5E-05 1.7E-09 66.4 9.2 84 260-356 13-96 (103)
197 3qr2_A Basigin; CD147, EMMPRIN 97.9 7.4E-06 2.5E-10 75.8 4.0 97 252-348 19-118 (137)
198 2v9t_A Roundabout homolog 1; s 97.8 9.8E-06 3.4E-10 72.6 4.3 91 255-348 10-100 (117)
199 1wwc_A Protein (NT-3 growth fa 97.8 1.3E-05 4.3E-10 72.1 4.8 81 270-356 21-101 (118)
200 4fs7_A Uncharacterized protein 97.8 5.2E-05 1.8E-09 83.3 10.4 146 49-204 230-376 (394)
201 4h09_A Hypothetical leucine ri 97.8 9.8E-05 3.4E-09 80.4 12.3 135 50-191 218-352 (379)
202 2e6p_A Obscurin-like protein 1 97.8 4.1E-05 1.4E-09 66.9 7.5 78 264-356 20-97 (104)
203 2cry_A KIN of IRRE-like protei 97.8 4.8E-06 1.7E-10 75.4 1.1 90 261-355 20-112 (122)
204 2dlt_A Myosin binding protein 97.8 4.1E-05 1.4E-09 67.3 7.0 86 257-355 11-96 (106)
205 2edf_A Obscurin; beta-sandwich 97.8 4.1E-05 1.4E-09 66.7 6.8 82 260-356 14-95 (103)
206 3rbs_A Myomesin-1; immunoglobu 97.7 2.2E-05 7.5E-10 78.3 5.1 77 264-352 126-203 (207)
207 3rw6_A Nuclear RNA export fact 97.7 1.3E-05 4.5E-10 83.5 3.0 79 73-153 168-257 (267)
208 1waa_A Titin; metal binding pr 97.7 3.4E-05 1.2E-09 66.7 5.2 72 260-342 11-82 (93)
209 4fs7_A Uncharacterized protein 97.7 0.00014 4.9E-09 79.8 11.5 124 74-204 229-353 (394)
210 2dku_A KIAA1556 protein; beta- 97.7 0.00014 4.8E-09 63.3 9.0 89 255-358 9-97 (103)
211 2edk_A Myosin-binding protein 97.7 4.1E-05 1.4E-09 66.6 5.5 74 261-341 15-88 (101)
212 4gt6_A Cell surface protein; l 97.7 8.8E-05 3E-09 81.5 9.4 126 49-183 265-390 (394)
213 2k1m_A Myosin-binding protein 97.7 7.9E-05 2.7E-09 64.1 7.1 70 259-339 13-82 (95)
214 2lvc_A Obscurin-like protein 1 97.7 4.6E-05 1.6E-09 65.7 5.5 68 264-342 16-83 (91)
215 2e7b_A Obscurin; IG-like domai 97.6 9.2E-05 3.1E-09 64.5 7.3 87 255-356 9-95 (103)
216 3mjg_X Beta-type platelet-deri 97.6 8.6E-05 3E-09 76.8 7.8 91 263-358 190-280 (289)
217 2cr6_A KIAA1556 protein, obscu 97.6 5.3E-05 1.8E-09 67.7 5.3 83 261-356 20-102 (115)
218 1eaj_A Coxsackie virus and ade 97.6 6.2E-05 2.1E-09 67.3 5.6 103 253-355 4-124 (126)
219 2r15_A Myomesin-1; sarcomeric 97.6 4.8E-05 1.6E-09 74.6 5.3 85 263-356 126-210 (212)
220 2yuv_A Myosin-binding protein 97.6 0.00012 4.1E-09 63.5 6.7 77 264-355 18-94 (100)
221 2j8h_A Titin, connectin; cardi 97.6 9.5E-05 3.2E-09 71.7 6.7 90 260-357 10-99 (197)
222 2v5t_A NCAM2, N-CAM 2, neural 97.6 5.3E-05 1.8E-09 72.7 4.8 82 263-356 107-188 (189)
223 3kld_A Contactin 4, axcam, BIG 97.5 3.5E-05 1.2E-09 83.9 3.8 80 262-355 303-382 (384)
224 1z9m_A GAPA225; nectin-like, I 97.5 0.00013 4.4E-09 68.1 6.9 94 260-356 44-138 (145)
225 3mtr_A N-CAM-1, NCAM-1, neural 97.5 8.6E-05 2.9E-09 73.6 6.0 88 261-356 25-112 (215)
226 3s97_C Contactin-1; carbonic a 97.5 3.4E-05 1.2E-09 74.8 3.0 78 263-354 122-199 (201)
227 2yd1_A Tyrosine-protein phosph 97.5 7.3E-05 2.5E-09 73.8 5.3 82 262-356 118-200 (212)
228 2rik_A Titin; I-SET IG fold, p 97.5 7.9E-05 2.7E-09 76.8 5.8 90 255-354 193-282 (284)
229 4fqp_A Poliovirus receptor; im 97.5 6E-05 2E-09 79.3 4.9 76 265-356 228-304 (313)
230 2j8h_A Titin, connectin; cardi 97.5 7.4E-05 2.5E-09 72.4 5.0 83 262-354 112-195 (197)
231 2wv3_A Neuroplastin; igcam, me 97.5 0.0001 3.5E-09 71.3 5.9 88 261-355 99-189 (190)
232 2y25_A Myomesin; structural pr 97.5 0.00012 4.1E-09 76.5 6.7 85 263-356 231-315 (317)
233 4frw_A Poliovirus receptor-rel 97.5 0.00011 3.8E-09 71.6 6.0 84 264-356 128-211 (218)
234 2a38_A Titin; Z1Z2, structural 97.5 6.2E-05 2.1E-09 72.7 4.2 82 263-354 112-193 (194)
235 4fa8_A Secreted protein BARF1; 97.5 5.4E-05 1.9E-09 75.4 3.8 82 261-348 113-194 (203)
236 1nbq_A JAM, junctional adhesio 97.5 0.00015 5.2E-09 70.6 6.9 84 263-349 116-200 (209)
237 2eny_A Obscurin; beta-sandwich 97.5 0.00012 4.1E-09 64.4 5.4 73 259-341 13-86 (104)
238 1itb_B Type 1 interleukin-1 re 97.5 0.00016 5.6E-09 75.7 7.5 89 264-354 219-312 (315)
239 2iep_A Muscle-specific kinase 97.5 7.1E-05 2.4E-09 72.1 4.3 83 261-356 107-190 (192)
240 2yd1_A Tyrosine-protein phosph 97.4 0.00017 5.9E-09 71.1 6.9 92 257-356 9-102 (212)
241 2yd6_A PTPRD protein; hydrolas 97.4 8.3E-05 2.8E-09 73.5 4.6 91 257-356 9-100 (212)
242 2a38_A Titin; Z1Z2, structural 97.4 0.00012 4E-09 70.7 5.5 90 259-356 10-99 (194)
243 3lcy_A Titin; A-BAND, IG tande 97.4 0.00012 4.1E-09 70.6 5.4 91 257-357 10-100 (197)
244 2v44_A NCAM2, neural cell adhe 97.4 0.0001 3.4E-09 71.1 4.8 83 262-355 104-186 (189)
245 4gos_A V-SET domain-containing 97.4 0.00017 5.8E-09 65.9 6.1 95 260-354 11-118 (125)
246 2o26_X MAST/stem cell growth f 97.4 0.0001 3.4E-09 76.4 5.2 96 256-354 190-286 (290)
247 1pd6_A Cardiac MYBP-C;, myosin 97.4 0.00025 8.4E-09 62.5 6.7 68 264-341 26-93 (104)
248 1qz1_A Neural cell adhesion mo 97.4 9.5E-05 3.3E-09 76.3 4.7 85 263-355 205-289 (291)
249 2wim_A N-CAM 2, NCAM2, neural 97.4 0.00015 5.3E-09 74.7 6.2 82 263-356 203-284 (291)
250 2v9r_A Roundabout homolog 1; p 97.4 0.00019 6.6E-09 70.1 6.4 82 262-356 119-202 (212)
251 1cs6_A Axonin-1; neural cell a 97.4 8.8E-05 3E-09 80.1 4.2 79 263-355 303-381 (382)
252 1f97_A Junction adhesion molec 97.4 0.00018 6.1E-09 70.2 6.1 90 264-356 114-205 (212)
253 3ojm_B Fibroblast growth facto 97.4 0.00014 4.8E-09 72.0 5.3 87 262-357 27-113 (231)
254 3ojm_B Fibroblast growth facto 97.4 0.00024 8.1E-09 70.4 6.9 94 262-358 126-223 (231)
255 2vr9_A Roundabout 1, ROBO; imm 97.4 0.0003 1E-08 69.3 7.6 88 262-355 116-205 (217)
256 2jll_A NCAM2, neural cell adhe 97.3 0.00024 8.3E-09 76.7 7.4 89 263-356 9-99 (389)
257 3k0w_A Mucosa-associated lymph 97.3 0.0002 6.8E-09 71.2 6.0 76 261-355 125-201 (218)
258 1rhf_A Tyrosine-protein kinase 97.3 0.00036 1.2E-08 66.6 7.7 92 257-356 5-97 (182)
259 2yd6_A PTPRD protein; hydrolas 97.3 0.00012 4.1E-09 72.3 4.4 87 262-355 116-203 (212)
260 2dm7_A KIAA1556 protein; beta- 97.3 0.00029 9.8E-09 61.8 6.4 75 255-341 9-83 (108)
261 3grw_A Fibroblast growth facto 97.3 0.00027 9.1E-09 70.8 6.9 93 263-357 123-219 (241)
262 3jz7_A MCAR, CAR, coxsackievir 97.3 0.00012 4E-09 71.6 3.9 77 265-355 132-211 (214)
263 2x1w_L Vascular endothelial gr 97.3 0.00023 7.8E-09 70.6 6.1 89 264-356 115-207 (213)
264 2edh_A Obscurin; structural ge 97.3 0.00026 8.9E-09 62.7 5.9 80 260-355 25-104 (113)
265 2ny1_B T-cell surface glycopro 97.3 0.00016 5.6E-09 69.5 4.8 73 264-356 107-179 (184)
266 2va4_A NCAM2, N-CAM 2, neural 97.3 0.00021 7E-09 68.7 5.5 83 262-356 12-94 (192)
267 2nzi_A Titin; IG-domain, FNIII 97.3 0.00019 6.4E-09 74.8 5.5 89 260-356 10-98 (305)
268 2c5d_C AXL oncogene, tyrosine- 97.3 0.00021 7.3E-09 69.2 5.6 77 261-354 113-191 (195)
269 3p3y_A Neurofascin; IG domains 97.3 0.00017 5.9E-09 78.1 5.4 82 262-354 320-401 (404)
270 1epf_A NCAM, protein (neural c 97.3 0.00013 4.3E-09 70.4 3.9 80 262-352 108-187 (191)
271 3qs7_E FL cytokine receptor; i 97.3 0.00032 1.1E-08 77.9 7.5 84 261-355 55-138 (423)
272 2v5m_A Dscam; neurobiology SPL 97.3 0.00013 4.4E-09 78.8 4.2 72 263-354 316-387 (388)
273 3b5h_A Cervical EMMPRIN, HAB18 97.3 0.00037 1.3E-08 66.7 7.1 94 255-355 84-182 (184)
274 2va4_A NCAM2, N-CAM 2, neural 97.3 0.0004 1.4E-08 66.6 7.3 85 265-354 105-191 (192)
275 3lcy_A Titin; A-BAND, IG tande 97.3 0.0002 6.7E-09 69.0 5.0 83 263-355 112-195 (197)
276 3ejj_X Macrophage colony-stimu 97.3 0.00022 7.6E-09 73.4 5.6 87 262-356 194-281 (289)
277 2c5d_C AXL oncogene, tyrosine- 97.3 0.00031 1.1E-08 68.0 6.3 93 260-355 8-104 (195)
278 2yd9_A Receptor-type tyrosine- 97.3 0.00022 7.7E-09 74.4 5.6 92 257-357 9-101 (304)
279 2eo1_A OBSCN protein, cDNA FLJ 97.3 0.00042 1.4E-08 60.0 6.5 68 263-341 20-87 (102)
280 2cpc_A KIAA0657 protein; immun 97.2 0.00036 1.2E-08 61.7 6.1 77 264-355 23-99 (113)
281 1bih_A Hemolin; insect immunit 97.2 0.00014 4.8E-09 78.6 3.8 76 264-354 319-394 (395)
282 2rik_A Titin; I-SET IG fold, p 97.2 0.0002 6.8E-09 73.7 4.8 88 259-356 10-97 (284)
283 2iep_A Muscle-specific kinase 97.2 0.00049 1.7E-08 66.1 7.1 89 257-356 10-99 (192)
284 1ry7_B FGFR-3, fibroblast grow 97.2 0.00046 1.6E-08 72.9 7.4 92 262-358 230-329 (334)
285 2y23_A Myomesin; structural pr 97.2 0.00019 6.6E-09 74.7 4.4 78 264-353 231-309 (312)
286 4dep_C Interleukin-1 receptor 97.2 0.00015 5E-09 77.4 3.5 90 265-355 237-332 (349)
287 3e4g_A ATP synthase subunit S, 97.2 0.0001 3.6E-09 71.6 2.0 34 76-109 62-95 (176)
288 3grw_A Fibroblast growth facto 97.2 0.00028 9.6E-09 70.6 5.2 85 263-356 24-108 (241)
289 1rhf_A Tyrosine-protein kinase 97.2 0.00031 1.1E-08 67.1 5.2 75 261-354 105-181 (182)
290 3bp6_B Programmed cell death 1 97.2 0.00039 1.3E-08 67.8 6.0 89 262-356 10-103 (202)
291 3laf_A Deleted in colorectal c 97.2 0.00015 5.1E-09 78.7 3.1 81 262-355 320-400 (403)
292 3k0w_A Mucosa-associated lymph 97.2 0.0005 1.7E-08 68.2 6.7 83 255-356 19-102 (218)
293 2yd9_A Receptor-type tyrosine- 97.1 0.00022 7.6E-09 74.4 4.1 78 263-356 214-291 (304)
294 4fa8_A Secreted protein BARF1; 97.1 0.00028 9.5E-09 70.2 4.5 91 263-356 2-105 (203)
295 3r08_E T-cell surface glycopro 97.1 0.00033 1.1E-08 59.2 4.3 59 262-341 7-66 (82)
296 2oyp_A Hepatitis A virus cellu 97.1 0.00075 2.6E-08 58.8 6.8 92 264-356 4-108 (109)
297 2wv3_A Neuroplastin; igcam, me 97.1 0.00039 1.3E-08 67.1 5.3 77 264-356 12-91 (190)
298 4fom_A Poliovirus receptor-rel 97.1 0.00017 5.9E-09 75.3 2.7 78 264-356 222-300 (308)
299 1pko_A Myelin oligodendrocyte 97.1 0.0007 2.4E-08 62.4 6.6 94 262-355 14-120 (139)
300 2vr9_A Roundabout 1, ROBO; imm 97.1 0.00038 1.3E-08 68.5 4.9 95 256-356 11-106 (217)
301 1vca_A VCAM-D1,2, human vascul 97.1 0.00065 2.2E-08 67.0 6.4 79 265-356 12-90 (202)
302 3b43_A Titin; I-SET IG fold, e 97.1 0.00042 1.4E-08 79.8 5.6 87 260-356 390-476 (570)
303 2fbo_J V1V2;, variable region- 97.0 0.00028 9.7E-09 70.9 3.7 85 263-347 145-240 (250)
304 3jz7_A MCAR, CAR, coxsackievir 97.0 0.00082 2.8E-08 65.4 6.9 97 261-357 7-121 (214)
305 3p2t_A Leukocyte immunoglobuli 97.0 0.00051 1.7E-08 66.9 5.3 79 265-355 15-95 (196)
306 4f80_A Butyrophilin subfamily 97.0 0.0012 4E-08 65.8 8.0 90 263-352 13-115 (226)
307 2v9r_A Roundabout homolog 1; p 97.0 0.00046 1.6E-08 67.4 4.7 96 258-356 13-109 (212)
308 3qs9_E FL cytokine receptor; i 97.0 0.00051 1.7E-08 78.6 5.8 80 263-356 335-414 (527)
309 1jbj_A CD3 epsilon and gamma e 97.0 0.00041 1.4E-08 67.4 4.1 62 265-346 118-179 (186)
310 3bp6_B Programmed cell death 1 97.0 0.00049 1.7E-08 67.1 4.7 79 265-355 114-192 (202)
311 1nbq_A JAM, junctional adhesio 97.0 0.00032 1.1E-08 68.3 3.3 97 258-356 8-104 (209)
312 1f2q_A High affinity immunoglo 97.0 0.00052 1.8E-08 65.5 4.7 75 264-356 95-171 (176)
313 2v5t_A NCAM2, N-CAM 2, neural 97.0 0.00048 1.6E-08 65.9 4.3 84 261-355 9-92 (189)
314 2ec8_A MAST/stem cell growth f 96.9 0.00085 2.9E-08 75.9 6.9 89 263-356 322-411 (524)
315 3udw_C Poliovirus receptor; PV 96.9 0.001 3.6E-08 58.6 6.1 92 264-355 10-115 (118)
316 3e4g_A ATP synthase subunit S, 96.9 0.00011 3.7E-09 71.6 -0.5 38 50-89 62-100 (176)
317 1f97_A Junction adhesion molec 96.9 0.00042 1.5E-08 67.5 3.7 95 260-356 7-101 (212)
318 4gjt_B Poliovirus receptor-rel 96.9 0.0017 5.7E-08 58.7 7.4 94 262-355 8-116 (123)
319 3u83_A Poliovirus receptor-rel 96.9 0.00031 1E-08 74.0 2.6 77 264-356 242-320 (331)
320 2e6q_A Obscurin-like protein 1 96.9 0.002 6.7E-08 57.8 7.6 90 259-356 13-105 (112)
321 3r4d_A CEA-related cell adhesi 96.9 0.00058 2E-08 66.6 4.3 70 266-348 122-191 (208)
322 3b43_A Titin; I-SET IG fold, e 96.9 0.00057 1.9E-08 78.6 4.9 83 263-354 486-568 (570)
323 1jhl_L IGG1-kappa D11.15 FV (l 96.9 0.0012 4E-08 58.1 5.9 79 262-343 9-94 (108)
324 3sgj_C Human FCG3A receptor; r 96.9 0.00094 3.2E-08 66.0 5.9 71 263-355 16-87 (204)
325 3kld_A Contactin 4, axcam, BIG 96.9 0.00075 2.6E-08 73.3 5.6 80 263-356 214-294 (384)
326 1e07_A Carcinoembryonic antige 96.9 0.0011 3.7E-08 77.1 7.3 73 263-356 568-640 (642)
327 1ry7_B FGFR-3, fibroblast grow 96.9 0.00099 3.4E-08 70.2 6.4 85 264-357 133-217 (334)
328 3sgj_C Human FCG3A receptor; r 96.9 0.00045 1.5E-08 68.3 3.4 75 264-356 98-174 (204)
329 3mj6_A Junctional adhesion mol 96.9 0.00095 3.3E-08 68.0 5.9 94 263-357 127-238 (268)
330 2or8_A Hepatitis A virus cellu 96.9 0.0028 9.4E-08 56.1 8.3 94 262-356 5-109 (116)
331 3ry4_A Low affinity immunoglob 96.9 0.00062 2.1E-08 64.3 4.1 64 264-345 95-159 (170)
332 3v2a_R Vascular endothelial gr 96.9 0.00017 5.7E-09 85.6 0.0 87 262-360 674-760 (772)
333 3o4o_C Interleukin-1 receptor 96.9 0.00063 2.1E-08 72.1 4.5 97 257-353 229-332 (339)
334 3qs7_E FL cytokine receptor; i 96.8 0.00089 3.1E-08 74.2 5.7 82 263-358 335-416 (423)
335 3rbs_A Myomesin-1; immunoglobu 96.8 0.0014 4.7E-08 65.1 6.6 72 262-341 10-82 (207)
336 3p3y_A Neurofascin; IG domains 96.8 0.0011 3.7E-08 71.7 6.2 81 263-356 231-311 (404)
337 2gi7_A GPVI protein; IG-like d 96.8 0.00062 2.1E-08 65.8 3.8 69 265-354 18-88 (184)
338 1epf_A NCAM, protein (neural c 96.8 0.00086 3E-08 64.4 4.8 76 261-344 9-86 (191)
339 3uto_A Twitchin; kinase, muscl 96.8 0.00063 2.2E-08 78.7 4.4 84 261-354 489-572 (573)
340 1f2q_A High affinity immunoglo 96.8 0.0011 3.7E-08 63.3 5.3 73 261-355 11-84 (176)
341 2d3v_A Leukocyte immunoglobuli 96.8 0.00082 2.8E-08 65.4 4.5 79 265-355 15-95 (196)
342 1sy6_A T-cell surface glycopro 96.8 0.00077 2.6E-08 66.7 4.3 65 268-345 127-192 (204)
343 1jbj_A CD3 epsilon and gamma e 96.8 0.00098 3.3E-08 64.7 4.9 66 266-352 11-77 (186)
344 1hng_A CD2; T lymphocyte adhes 96.8 0.00059 2E-08 65.7 3.3 61 269-350 110-170 (176)
345 1fnl_A Low affinity immunoglob 96.8 0.00098 3.4E-08 63.6 4.8 72 262-355 15-87 (175)
346 3mj8_L Stimulatory hamster ant 96.8 0.0024 8.2E-08 62.6 7.7 90 263-355 9-108 (213)
347 1fnl_A Low affinity immunoglob 96.8 0.00076 2.6E-08 64.4 3.8 64 264-345 98-162 (175)
348 2oz4_A Intercellular adhesion 96.7 0.00091 3.1E-08 68.3 4.5 70 263-355 194-263 (265)
349 4i0k_A CD276 antigen; immunogl 96.7 0.0015 5.3E-08 64.3 6.0 84 265-356 121-206 (222)
350 3oq3_B IFN-alpha/beta binding 96.7 0.002 6.8E-08 68.2 7.0 88 262-354 236-328 (329)
351 1nfd_E H57 FAB; complex (immun 96.7 0.00084 2.9E-08 65.9 3.7 79 266-349 125-205 (212)
352 2nzi_A Titin; IG-domain, FNIII 96.7 0.0014 4.8E-08 68.0 5.5 85 263-357 113-198 (305)
353 2ocw_A Polymeric-immunoglobuli 96.7 0.0023 7.7E-08 73.3 7.6 92 262-356 450-546 (585)
354 1ugn_A LIR1, leukocyte immunog 96.7 0.0023 7.9E-08 62.2 6.7 73 264-345 110-182 (198)
355 4f80_A Butyrophilin subfamily 96.7 0.0016 5.4E-08 64.8 5.5 85 261-354 125-211 (226)
356 2v44_A NCAM2, neural cell adhe 96.6 0.0014 4.8E-08 62.8 4.9 84 261-355 9-94 (189)
357 3nl4_L Antigen binding fragmen 96.6 0.0029 9.9E-08 61.9 7.0 92 261-355 8-109 (213)
358 3sbw_C Programmed cell death 1 96.6 0.0027 9.2E-08 62.4 6.8 93 262-355 9-114 (222)
359 2jll_A NCAM2, neural cell adhe 96.6 0.0015 5.1E-08 70.4 5.3 84 263-354 109-192 (389)
360 3q0h_A T cell immunoreceptor w 96.6 0.00096 3.3E-08 59.9 3.1 88 263-356 12-108 (117)
361 2zg1_A Sialic acid-binding IG- 96.6 0.0021 7.1E-08 63.0 5.8 71 266-352 135-209 (214)
362 1bih_A Hemolin; insect immunit 96.6 0.0017 5.9E-08 69.9 5.7 91 255-356 7-99 (395)
363 1qfw_M FV, antibody (anti beta 96.6 0.0029 9.8E-08 55.6 6.0 78 262-342 9-93 (108)
364 3rjd_A High affinity immunoglo 96.6 0.0022 7.7E-08 64.6 5.9 73 261-355 8-81 (262)
365 2v5m_A Dscam; neurobiology SPL 96.5 0.0017 5.9E-08 69.9 5.2 85 264-356 222-306 (388)
366 1xau_A B- and T-lymphocyte att 96.5 0.0033 1.1E-07 55.5 5.9 84 263-349 23-108 (122)
367 2pet_A Lutheran blood group gl 96.5 0.0014 4.9E-08 64.8 4.2 80 263-342 127-211 (231)
368 2vsd_A CHIR AB1; immune system 96.5 0.0012 4.1E-08 58.1 3.2 65 265-343 15-79 (105)
369 1z7z_I Intercellular adhesion 96.5 0.0016 5.4E-08 72.0 5.0 71 262-355 378-448 (450)
370 1gsm_A Madcam-1, mucosal addre 96.5 0.0018 6.2E-08 64.8 4.9 78 263-356 16-95 (210)
371 3oq3_B IFN-alpha/beta binding 96.5 0.0026 8.8E-08 67.3 6.4 72 265-349 139-213 (329)
372 1hng_A CD2; T lymphocyte adhes 96.5 0.0017 5.7E-08 62.5 4.5 87 263-355 5-98 (176)
373 4dkd_C Macrophage colony-stimu 96.5 0.0012 4.1E-08 67.9 3.7 87 263-357 195-282 (292)
374 2y25_A Myomesin; structural pr 96.5 0.0012 4.2E-08 68.6 3.8 73 263-347 15-88 (317)
375 3ry4_A Low affinity immunoglob 96.5 0.0029 9.9E-08 59.5 6.1 71 263-355 13-84 (170)
376 1ccz_A Protein (CD58); LFA-3, 96.5 0.0017 5.9E-08 62.3 4.5 86 263-356 4-94 (171)
377 2wng_A Tyrosine-protein phosph 96.5 0.0028 9.4E-08 66.8 6.6 86 260-345 9-99 (327)
378 1h5b_A Murine T cell receptor 96.5 0.0022 7.4E-08 56.9 4.8 83 261-344 8-95 (113)
379 2gi7_A GPVI protein; IG-like d 96.5 0.0024 8.2E-08 61.5 5.4 67 264-345 103-169 (184)
380 3dmk_A DOWN syndrome cell adhe 96.5 0.0015 5.1E-08 78.2 4.7 86 263-355 723-808 (816)
381 2x1w_L Vascular endothelial gr 96.5 0.0038 1.3E-07 61.6 6.8 79 262-354 15-99 (213)
382 1zox_A CLM-1; IG-superfamily, 96.5 0.0044 1.5E-07 54.7 6.6 92 262-354 9-108 (113)
383 3mjg_X Beta-type platelet-deri 96.5 0.0038 1.3E-07 64.2 7.2 86 257-357 3-89 (289)
384 1pgv_A TMD-1, tropomodulin TMD 96.5 0.00083 2.8E-08 66.5 1.9 83 75-157 41-136 (197)
385 1qz1_A Neural cell adhesion mo 96.5 0.0024 8.3E-08 65.6 5.5 77 261-345 9-87 (291)
386 2j6e_L IGM, FAB light chain; a 96.4 0.0023 7.9E-08 63.7 5.1 78 267-348 148-227 (234)
387 3o4o_C Interleukin-1 receptor 96.4 0.0015 5.1E-08 69.1 3.8 90 258-357 22-118 (339)
388 1uct_A Immunoglobulin alpha FC 96.4 0.0015 5.2E-08 65.3 3.7 71 264-346 18-90 (218)
389 2pet_A Lutheran blood group gl 96.4 0.0022 7.5E-08 63.4 4.8 97 261-357 7-115 (231)
390 1ncn_A T lymphocyte activation 96.4 0.0028 9.5E-08 55.7 4.9 83 263-350 3-99 (110)
391 3sbw_C Programmed cell death 1 96.4 0.0038 1.3E-07 61.4 6.4 83 265-355 127-210 (222)
392 3s96_B 3B5H10 FAB light chain; 96.4 0.0024 8.2E-08 62.7 4.9 79 263-344 9-99 (218)
393 2if7_A SLAM family member 6; N 96.4 0.0025 8.6E-08 62.1 4.9 89 261-355 5-105 (193)
394 3laf_A Deleted in colorectal c 96.4 0.0025 8.4E-08 68.9 5.3 82 263-356 230-311 (403)
395 2ec8_A MAST/stem cell growth f 96.4 0.0033 1.1E-07 71.0 6.4 97 255-356 212-309 (524)
396 2d3v_A Leukocyte immunoglobuli 96.4 0.0016 5.6E-08 63.3 3.4 72 264-344 109-180 (196)
397 2nru_A Interleukin-1 receptor- 96.4 0.0018 6.2E-08 67.7 4.0 44 428-473 12-61 (307)
398 2q20_A VK1 O18/O8 germline lig 96.4 0.0027 9.4E-08 55.9 4.5 79 261-342 10-95 (109)
399 3p2t_A Leukocyte immunoglobuli 96.3 0.002 6.7E-08 62.6 3.8 70 265-344 110-179 (196)
400 1uct_A Immunoglobulin alpha FC 96.3 0.003 1E-07 63.1 5.3 66 264-343 115-180 (218)
401 2d9c_A Signal-regulatory prote 96.3 0.0095 3.3E-07 54.5 8.3 83 260-344 14-103 (136)
402 3pv7_A B7-H6, IG-like domain-c 96.3 0.0019 6.6E-08 65.1 3.8 94 263-356 12-118 (248)
403 2wim_A N-CAM 2, NCAM2, neural 96.3 0.004 1.4E-07 63.9 6.3 85 261-356 105-189 (291)
404 3r06_A Anti-mouse CD3epsilon a 96.3 0.0045 1.5E-07 60.5 6.4 91 261-354 8-106 (213)
405 4dep_C Interleukin-1 receptor 96.3 0.0023 7.8E-08 68.0 4.5 92 261-357 14-116 (349)
406 3mj8_L Stimulatory hamster ant 96.3 0.001 3.6E-08 65.2 1.7 78 266-348 126-205 (213)
407 1wio_A CD4, T-cell surface gly 96.3 0.0027 9.1E-08 68.1 5.1 94 262-355 184-292 (363)
408 1neu_A Myelin P0 protein; stru 96.3 0.0044 1.5E-07 55.3 5.7 92 263-355 8-118 (124)
409 1i3g_L Antibody FV fragment; a 96.3 0.0042 1.4E-07 54.9 5.3 80 260-342 10-96 (111)
410 4hwn_A FC receptor-like A; FCR 96.3 0.0021 7.3E-08 56.8 3.3 62 265-344 18-84 (108)
411 3mj6_A Junctional adhesion mol 96.3 0.0041 1.4E-07 63.2 5.9 97 259-356 10-120 (268)
412 3rrq_A Protein PD-1, programme 96.3 0.0054 1.8E-07 56.0 6.1 96 261-357 8-116 (129)
413 1xt5_A Variable region-contain 96.3 0.0043 1.5E-07 56.3 5.4 80 261-344 11-116 (135)
414 3khq_A B-cell antigen receptor 96.3 0.0053 1.8E-07 56.5 6.0 77 260-344 23-101 (133)
415 3d9a_L Light chain of hyhel10 96.3 0.0021 7.1E-08 63.0 3.4 77 267-346 125-203 (213)
416 2q87_A CMRF35-H antigen; all-b 96.2 0.0069 2.3E-07 53.2 6.4 93 263-356 5-106 (110)
417 2r15_A Myomesin-1; sarcomeric 96.2 0.0027 9.2E-08 61.8 4.1 71 268-348 16-87 (212)
418 1cs6_A Axonin-1; neural cell a 96.2 0.0036 1.2E-07 67.2 5.4 78 263-356 216-293 (382)
419 1dr9_A B7-1 (CD80), T lymphocy 96.2 0.0049 1.7E-07 59.8 5.9 76 267-351 119-196 (201)
420 1oll_A NK receptor; immune sys 96.2 0.004 1.4E-07 60.1 5.2 65 264-343 108-172 (188)
421 2ny1_B T-cell surface glycopro 96.2 0.0041 1.4E-07 59.5 5.1 82 263-344 4-92 (184)
422 4frw_A Poliovirus receptor-rel 96.2 0.0058 2E-07 59.1 6.3 87 262-348 7-107 (218)
423 1oll_A NK receptor; immune sys 96.2 0.0036 1.2E-07 60.5 4.7 79 265-355 14-94 (188)
424 1q0x_L FAB 9B1, light chain; a 96.2 0.0024 8.2E-08 62.6 3.4 75 267-345 128-204 (212)
425 3r4d_A CEA-related cell adhesi 96.2 0.0039 1.3E-07 60.5 5.0 92 264-355 9-107 (208)
426 3omz_A Human vdelta1 gamma del 96.2 0.0039 1.3E-07 63.5 5.1 85 259-344 7-103 (259)
427 2wng_A Tyrosine-protein phosph 96.2 0.0047 1.6E-07 65.0 5.9 77 266-347 232-310 (327)
428 2fbo_J V1V2;, variable region- 96.2 0.004 1.4E-07 62.3 5.1 82 261-346 9-116 (250)
429 3qs9_E FL cytokine receptor; i 96.2 0.0068 2.3E-07 69.2 7.6 81 263-354 57-137 (527)
430 1ugn_A LIR1, leukocyte immunog 96.2 0.0027 9.2E-08 61.7 3.6 80 265-356 15-97 (198)
431 4fmk_A Poliovirus receptor-rel 96.1 0.007 2.4E-07 58.8 6.6 86 263-348 10-111 (225)
432 3d9a_L Light chain of hyhel10 96.1 0.0078 2.7E-07 58.8 6.9 92 261-355 8-107 (213)
433 1c1e_H Catalytic antibody 1E9 96.1 0.0022 7.6E-08 63.3 3.0 75 265-347 135-211 (219)
434 2or7_A T-cell immunoglobulin a 96.1 0.0079 2.7E-07 53.3 6.3 84 262-346 5-100 (115)
435 3tv3_L PGT128 light chain, IG 96.1 0.0093 3.2E-07 58.2 7.5 88 263-355 9-105 (211)
436 3pv7_A B7-H6, IG-like domain-c 96.1 0.0054 1.9E-07 61.7 5.9 91 266-356 130-224 (248)
437 1lk3_L 9D7 light chain; antige 96.1 0.0033 1.1E-07 61.5 4.1 77 267-346 124-202 (210)
438 1itb_B Type 1 interleukin-1 re 96.1 0.0031 1.1E-07 65.8 4.1 82 263-354 14-96 (315)
439 2e27_L Anti-ciguatoxin antibod 96.1 0.0031 1E-07 56.8 3.5 79 261-342 10-95 (119)
440 3r0n_A Poliovirus receptor-rel 96.1 0.0056 1.9E-07 55.2 5.3 87 263-349 11-123 (128)
441 1q9r_B S25-2 FAB (IGG1K) heavy 96.1 0.0017 5.8E-08 64.4 1.9 73 266-346 139-213 (222)
442 1mqk_L Antibody 7E2 FV fragmen 96.1 0.0059 2E-07 54.9 5.4 80 261-343 8-94 (120)
443 1i8k_A Epidermal growth factor 96.0 0.0057 1.9E-07 53.6 4.8 79 261-342 8-93 (107)
444 2rcj_C Light chain; immunoglob 96.0 0.0052 1.8E-07 69.4 5.6 82 265-353 230-313 (523)
445 1dr9_A B7-1 (CD80), T lymphocy 96.0 0.006 2E-07 59.1 5.3 80 264-347 4-92 (201)
446 1lk3_L 9D7 light chain; antige 96.0 0.011 3.8E-07 57.7 7.2 92 261-355 7-106 (210)
447 2qsq_A Carcinoembryonic antige 96.0 0.007 2.4E-07 54.0 5.1 85 264-354 10-107 (111)
448 2ywz_A NEW antigen receptor va 96.0 0.0037 1.3E-07 55.3 3.3 77 261-341 7-87 (111)
449 3s97_C Contactin-1; carbonic a 95.9 0.0049 1.7E-07 59.2 4.4 76 262-347 16-93 (201)
450 2ocw_A Polymeric-immunoglobuli 95.9 0.011 3.9E-07 67.4 8.2 102 255-356 113-221 (585)
451 4fmk_A Poliovirus receptor-rel 95.9 0.0071 2.4E-07 58.8 5.6 80 268-354 135-215 (225)
452 3moq_A NEW antigen receptor va 95.9 0.0036 1.2E-07 57.3 3.1 80 261-344 7-90 (126)
453 4dzb_B Vbeta2 (MAIT T cell rec 95.9 0.0068 2.3E-07 60.9 5.4 82 261-344 8-101 (246)
454 3tf7_C 42F3 MUT7 SCFV (42F3 al 95.9 0.01 3.5E-07 60.3 6.7 85 259-344 8-100 (256)
455 3sob_L Antibody light chain; b 95.9 0.012 4.1E-07 58.4 7.1 92 261-355 31-130 (237)
456 2p1y_A Bispecific alpha/beta T 95.9 0.0045 1.5E-07 61.8 3.9 82 261-343 134-222 (238)
457 1e07_A Carcinoembryonic antige 95.9 0.0087 3E-07 69.4 6.9 73 264-357 391-463 (642)
458 2ptt_A CD48 antigen; CD244, CD 95.9 0.014 4.8E-07 51.1 6.7 76 263-343 12-96 (110)
459 2yz1_A Tyrosine-protein phosph 95.9 0.0075 2.5E-07 53.8 4.9 83 260-343 13-101 (120)
460 2ghw_B Anti-SARS SCFV antibody 95.9 0.0089 3E-07 60.1 6.1 79 263-344 144-229 (247)
461 3esu_F Antibody 14B7* light ch 95.9 0.0088 3E-07 60.2 6.0 84 259-345 9-99 (250)
462 2jju_A Signal regulatory prote 95.9 0.0077 2.6E-07 54.6 5.0 81 261-343 10-97 (127)
463 3tv3_L PGT128 light chain, IG 95.9 0.0022 7.4E-08 62.9 1.4 78 267-348 124-203 (211)
464 3sob_L Antibody light chain; b 95.8 0.0053 1.8E-07 60.9 4.2 77 267-346 148-226 (237)
465 3nl4_L Antigen binding fragmen 95.8 0.0047 1.6E-07 60.4 3.7 72 266-340 126-198 (213)
466 3eow_R Poliovirus receptor; im 95.8 0.011 3.8E-07 58.2 6.3 77 267-350 128-206 (221)
467 2edo_A CD48 antigen; beta-sand 95.8 0.0073 2.5E-07 54.5 4.6 89 263-356 13-110 (121)
468 2xzc_L FAB A.17 light chain; i 95.8 0.012 4E-07 57.8 6.5 76 268-346 128-205 (216)
469 3rjd_A High affinity immunoglo 95.8 0.0043 1.5E-07 62.5 3.2 75 264-356 92-167 (262)
470 2o26_X MAST/stem cell growth f 95.8 0.0088 3E-07 61.5 5.7 78 255-356 13-90 (290)
471 1pz5_B Heavy chain of FAB (SYA 95.8 0.0037 1.3E-07 61.8 2.7 75 266-348 137-213 (220)
472 2rcj_C Light chain; immunoglob 95.8 0.011 3.6E-07 66.8 6.7 84 265-352 125-210 (523)
473 1pgv_A TMD-1, tropomodulin TMD 95.8 0.0025 8.5E-08 63.0 1.3 111 49-159 41-169 (197)
474 3d9a_H Heavy chain of hyhel10 95.7 0.0044 1.5E-07 60.7 3.1 74 265-346 129-204 (210)
475 3auv_A SC-DSFV derived from th 95.7 0.0098 3.4E-07 61.3 5.9 84 259-345 17-107 (276)
476 4fom_A Poliovirus receptor-rel 95.7 0.013 4.4E-07 60.8 6.7 84 265-357 125-209 (308)
477 1u3h_A T-cell receptor alpha-c 94.7 0.0017 5.9E-08 57.3 0.0 81 261-342 6-93 (110)
478 2yc1_B Single chain antibody f 95.7 0.01 3.5E-07 55.7 5.3 81 259-342 21-108 (146)
479 3eow_R Poliovirus receptor; im 95.7 0.0092 3.2E-07 58.8 5.3 93 263-355 8-114 (221)
480 1moe_A Anti-CEA MAB T84.66; an 95.7 0.012 4E-07 58.8 6.1 93 261-356 8-112 (240)
481 4i0k_A CD276 antigen; immunogl 95.7 0.0072 2.5E-07 59.4 4.4 91 264-355 5-106 (222)
482 1nkr_A P58-CL42 KIR; inhibitor 95.7 0.0081 2.8E-07 58.6 4.7 69 264-342 17-85 (201)
483 3dmk_A DOWN syndrome cell adhe 95.7 0.0095 3.3E-07 71.2 6.3 88 264-356 439-526 (816)
484 1vca_A VCAM-D1,2, human vascul 95.7 0.0096 3.3E-07 58.5 5.3 77 264-346 101-180 (202)
485 2rgs_A I, IG gamma-2B heavy ch 95.7 0.0057 1.9E-07 60.7 3.5 76 266-346 23-102 (218)
486 1wio_A CD4, T-cell surface gly 95.6 0.0048 1.6E-07 66.1 3.2 71 265-355 107-177 (363)
487 3uim_A Brassinosteroid insensi 95.6 0.0061 2.1E-07 64.3 3.9 45 427-473 16-61 (326)
488 3b5h_A Cervical EMMPRIN, HAB18 95.6 0.014 4.8E-07 55.4 6.2 72 264-355 8-81 (184)
489 2vol_A Murine IGG FC; FC, zinc 95.6 0.01 3.4E-07 58.3 5.2 76 266-346 15-94 (207)
490 1sq2_N Novel antigen receptor; 95.6 0.0081 2.8E-07 53.4 4.0 78 261-342 7-88 (113)
491 3bia_X T-cell immunoglobulin a 95.6 0.035 1.2E-06 49.1 8.2 79 263-342 5-95 (116)
492 4ffy_L DENV1-E111 single chain 95.6 0.014 4.7E-07 52.9 5.6 80 261-343 8-98 (126)
493 2c1o_A IGK-C protein; FAB frag 95.6 0.0065 2.2E-07 61.3 3.7 77 267-346 167-245 (254)
494 2fbj_H IGA-kappa J539 FAB (hea 95.6 0.0073 2.5E-07 60.0 4.0 76 266-347 134-212 (220)
495 3umt_A SCFV heavy chain and li 95.5 0.019 6.4E-07 58.2 7.0 82 261-345 145-233 (256)
496 1pew_A JTO2, A lambda-6 type i 95.5 0.012 4.3E-07 51.5 4.8 80 262-342 8-94 (109)
497 1z7z_I Intercellular adhesion 95.5 0.013 4.4E-07 64.5 6.0 72 263-347 95-169 (450)
498 3o3u_N Maltose-binding peripla 95.5 0.015 5.3E-07 66.4 6.9 91 264-356 376-469 (581)
499 1p6f_A NKP46, natural cytotoxi 95.5 0.013 4.4E-07 59.6 5.5 103 265-382 112-242 (242)
500 3s96_B 3B5H10 FAB light chain; 95.5 0.0044 1.5E-07 60.8 1.9 77 266-347 133-211 (218)
No 1
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=100.00 E-value=3e-38 Score=356.33 Aligned_cols=329 Identities=29% Similarity=0.530 Sum_probs=244.4
Q ss_pred ccCCCCCceecccCCeeEEEecCCCccccccCCCCCccEEEeeCCCCCCCCchhhhccCCCCccEEEccCCCCCccCccc
Q psy12044 15 VSACPTSCICKWKGGKQTVECVNKSLITVVEGMDPNTQVLDYTGNNLKTLHNEKFQKMGLVNLQKIYLSRCRISVIDSKA 94 (767)
Q Consensus 15 ~~~CP~~C~C~~~g~~~~v~C~~~~L~~iP~~l~~~L~~L~Ls~N~L~~l~~~~f~~~~L~~L~~L~Ls~N~L~~i~p~~ 94 (767)
+..||..|.|... ...|+|.+.++..+|.+++++++.|+|++|.|+.+.+..|.. +++|+.|+|++|.|+.+.+.+
T Consensus 32 ~~~Cp~~C~C~~~--~~~v~c~~~~l~~iP~~~~~~l~~L~L~~n~i~~~~~~~~~~--l~~L~~L~Ls~n~i~~i~~~~ 107 (440)
T 3zyj_A 32 AQTCPSVCSCSNQ--FSKVICVRKNLREVPDGISTNTRLLNLHENQIQIIKVNSFKH--LRHLEILQLSRNHIRTIEIGA 107 (440)
T ss_dssp -CCCCSSSEECTT--SCEEECCSCCCSSCCSCCCTTCSEEECCSCCCCEECTTTTSS--CSSCCEEECCSSCCCEECGGG
T ss_pred cccCCCCCEeCCC--CCEEEeCCCCcCcCCCCCCCCCcEEEccCCcCCeeCHHHhhC--CCCCCEEECCCCcCCccChhh
Confidence 4689999999753 357999999999999999999999999999999988888874 788888888888888887777
Q ss_pred ccCCCCCCEEEccCCCCCCCCCCCCCCCCCCcEEECCCCcCccccc----------------------------------
Q psy12044 95 FRGLTNLVDLDFSHNVLQTVPSDTFPDYPSLMKLTLSGNPIKQIKT---------------------------------- 140 (767)
Q Consensus 95 f~~L~~L~~L~Ls~N~Lt~l~p~~f~~l~~L~~L~Ls~N~l~~l~~---------------------------------- 140 (767)
|.++++|++|+|++|+|+.+++..|..+++|+.|+|++|.|+.+++
T Consensus 108 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L 187 (440)
T 3zyj_A 108 FNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNL 187 (440)
T ss_dssp GTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSC
T ss_pred ccCCccCCEEECCCCcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhccccc
Confidence 8888888888888887777776666666666666666665554433
Q ss_pred -------------------------------------CCcCCCCCccEEeccCCCccccchhhhcCCCCCCeeeccCCcc
Q psy12044 141 -------------------------------------GAFQPLSYLVTLELSKCGIEVIEDAAFVGLDSLEWLKLDNNKI 183 (767)
Q Consensus 141 -------------------------------------~~~~~l~~L~~L~Ls~N~L~~i~~~~~~~l~~L~~L~Ls~N~L 183 (767)
..|..+++|+.|+|++|.|+++.+..|..+++|+.|+|++|+|
T Consensus 188 ~~L~L~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l 267 (440)
T 3zyj_A 188 RYLNLAMCNLREIPNLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNL 267 (440)
T ss_dssp CEEECTTSCCSSCCCCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCC
T ss_pred CeecCCCCcCccccccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCC
Confidence 2333334444444444444444455566677777888888888
Q ss_pred ccccCCCC-CCCCcccccCCCCCCCchhhhhhhhhhhccCCCCC-ccCCCCCCCCCCCCCcccccccccccCC-CCCCCC
Q psy12044 184 TTISGSNI-LPTGLHGIDLHHNPWTCDCLLIGLRRWLESTKTPM-AIDPICSVPPRLSSVTIKQLSIDELACE-PQITPS 260 (767)
Q Consensus 184 t~ip~~~~-~~~~L~~L~Ls~N~l~C~c~l~~l~~~l~~~~~~~-~~~~~C~~p~~l~g~~i~~l~~~~l~C~-P~i~~~ 260 (767)
+.++...+ .+++|+.|+|++|+|.|||.+.|+..|++...... .....|..|..+.|..+..++...+.|. |.+...
T Consensus 268 ~~~~~~~~~~l~~L~~L~L~~Np~~CdC~l~~l~~~~~~~~~~~~~~~~~C~~P~~l~g~~l~~l~~~~~~C~~P~i~~~ 347 (440)
T 3zyj_A 268 TLLPHDLFTPLHHLERIHLHHNPWNCNCDILWLSWWIKDMAPSNTACCARCNTPPNLKGRYIGELDQNYFTCYAPVIVEP 347 (440)
T ss_dssp CCCCTTTTSSCTTCCEEECCSSCEECSSTTHHHHHHHHTTSCSSCSCCCBEEESTTTTTCBCC----CCSCCCCCCEEEC
T ss_pred CccChhHhccccCCCEEEcCCCCccCCCCchHHHHHHHhccccCCccccCCCChhHhcCccHhHhhhhhccCCCCccccc
Confidence 87776654 46889999999999999999999999998764332 2457899999999999999999999997 555556
Q ss_pred ccceeecccccccccccccccCCCcEEEeecCeec-cCCCcccccccceeecccCcceeeeEEEEeeeccCCCCceeEee
Q psy12044 261 TFYLEIQEGKNVSLLCKVSAIPEAKITWLFDGVPI-QNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCVA 339 (767)
Q Consensus 261 ~~~~~v~~G~~vsL~C~a~g~P~p~itW~~~g~~l-~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~GtY~CvA 339 (767)
+....+.+|+.+++.|.+ +.|.|.+.|.++++.+ ...... ..+... ..++|.|.+++.+|.|.|+|+|
T Consensus 348 ~~~~~v~~G~~v~L~C~~-~~p~p~i~W~~~~~~~~~~~~~~----~~~~~~------~~~~L~I~~v~~~D~G~Y~C~a 416 (440)
T 3zyj_A 348 PADLNVTEGMAAELKCRA-STSLTSVSWITPNGTVMTHGAYK----VRIAVL------SDGTLNFTNVTVQDTGMYTCMV 416 (440)
T ss_dssp CCCEEECTTSCCEECCEE-SSTTSEEEEECTTSCEEESSSCC----SSEEEC------TTCCEEESSCCSTTCEEEEEEE
T ss_pred ccceeeccCceEEEEeec-CCCCCceEEEeCCCceeeccCCC----ceEEEc------cCCeEEEccCChhhCEEEEEEE
Confidence 667889999999999999 5789999999854333 221110 011111 1246999999999999999999
Q ss_pred ccCCCCcccceEEEEEeec
Q psy12044 340 ENQAGSTSSNYTIRIVLKE 358 (767)
Q Consensus 340 ~N~~G~s~~s~sL~V~~~~ 358 (767)
.|..|.+.+.+.+.|....
T Consensus 417 ~N~~G~~~~~~~~~v~~~~ 435 (440)
T 3zyj_A 417 SNSVGNTTASATLNVTGTH 435 (440)
T ss_dssp ECSSCEEEEEEEEEEC---
T ss_pred EcCCCcEEEEEEEEEeccc
Confidence 9999999888888776644
No 2
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=100.00 E-value=6e-38 Score=355.07 Aligned_cols=329 Identities=27% Similarity=0.491 Sum_probs=248.3
Q ss_pred ccCCCCCceecccCCeeEEEecCCCccccccCCCCCccEEEeeCCCCCCCCchhhhccCCCCccEEEccCCCCCccCccc
Q psy12044 15 VSACPTSCICKWKGGKQTVECVNKSLITVVEGMDPNTQVLDYTGNNLKTLHNEKFQKMGLVNLQKIYLSRCRISVIDSKA 94 (767)
Q Consensus 15 ~~~CP~~C~C~~~g~~~~v~C~~~~L~~iP~~l~~~L~~L~Ls~N~L~~l~~~~f~~~~L~~L~~L~Ls~N~L~~i~p~~ 94 (767)
...||..|.|.+. ...|+|.+.++..+|.+++++++.|+|++|.|+++.+..|.+ +++|+.|+|++|.|+++.+..
T Consensus 43 ~~~Cp~~C~C~~~--~~~v~c~~~~l~~iP~~~~~~l~~L~L~~n~i~~~~~~~~~~--l~~L~~L~Ls~n~i~~~~~~~ 118 (452)
T 3zyi_A 43 PQNCPSVCSCSNQ--FSKVVCTRRGLSEVPQGIPSNTRYLNLMENNIQMIQADTFRH--LHHLEVLQLGRNSIRQIEVGA 118 (452)
T ss_dssp -CCCCTTSEECSS--SCEEECCSSCCSSCCSCCCTTCSEEECCSSCCCEECTTTTTT--CTTCCEEECCSSCCCEECTTT
T ss_pred cCCCCCCCEECCC--CcEEEECCCCcCccCCCCCCCccEEECcCCcCceECHHHcCC--CCCCCEEECCCCccCCcChhh
Confidence 4689999999864 357999999999999999999999999999999998888874 888888888888888888888
Q ss_pred ccCCCCCCEEEccCCCCCCCCCCCCCCCCCCcEEECCCCcCcccccC---------------------------------
Q psy12044 95 FRGLTNLVDLDFSHNVLQTVPSDTFPDYPSLMKLTLSGNPIKQIKTG--------------------------------- 141 (767)
Q Consensus 95 f~~L~~L~~L~Ls~N~Lt~l~p~~f~~l~~L~~L~Ls~N~l~~l~~~--------------------------------- 141 (767)
|.++++|++|+|++|.|+.+++..|..+++|+.|+|++|.|+.+++.
T Consensus 119 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L 198 (452)
T 3zyi_A 119 FNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNL 198 (452)
T ss_dssp TTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTC
T ss_pred ccCcccCCEEECCCCcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCC
Confidence 88888888888888888877777777777777777776666554432
Q ss_pred --------------------------------------CcCCCCCccEEeccCCCccccchhhhcCCCCCCeeeccCCcc
Q psy12044 142 --------------------------------------AFQPLSYLVTLELSKCGIEVIEDAAFVGLDSLEWLKLDNNKI 183 (767)
Q Consensus 142 --------------------------------------~~~~l~~L~~L~Ls~N~L~~i~~~~~~~l~~L~~L~Ls~N~L 183 (767)
.|..+++|+.|+|++|.|+++.+..|..+++|+.|+|++|+|
T Consensus 199 ~~L~L~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l 278 (452)
T 3zyi_A 199 KYLNLGMCNIKDMPNLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNL 278 (452)
T ss_dssp CEEECTTSCCSSCCCCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred CEEECCCCcccccccccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcC
Confidence 233333444444444444444455566667777777888888
Q ss_pred ccccCCCC-CCCCcccccCCCCCCCchhhhhhhhhhhccCCCCC-ccCCCCCCCCCCCCCcccccccccccCC-CCCCCC
Q psy12044 184 TTISGSNI-LPTGLHGIDLHHNPWTCDCLLIGLRRWLESTKTPM-AIDPICSVPPRLSSVTIKQLSIDELACE-PQITPS 260 (767)
Q Consensus 184 t~ip~~~~-~~~~L~~L~Ls~N~l~C~c~l~~l~~~l~~~~~~~-~~~~~C~~p~~l~g~~i~~l~~~~l~C~-P~i~~~ 260 (767)
+.++...+ .+++|+.|+|++|+|.|+|.+.|+..|++...... .....|..|..+.|..+..++...+.|. |.+...
T Consensus 279 ~~~~~~~~~~l~~L~~L~L~~Np~~CdC~~~~l~~~l~~~~~~~~~~~~~C~~P~~l~g~~l~~~~~~~~~C~~P~i~~~ 358 (452)
T 3zyi_A 279 SSLPHDLFTPLRYLVELHLHHNPWNCDCDILWLAWWLREYIPTNSTCCGRCHAPMHMRGRYLVEVDQASFQCSAPFIMDA 358 (452)
T ss_dssp SCCCTTSSTTCTTCCEEECCSSCEECSTTTHHHHHHHHHHC---CCSSCBEEESTTTTTCBTTSCCGGGCCCCCCCCSBC
T ss_pred CccChHHhccccCCCEEEccCCCcCCCCCchHHHHHHHHhCccCCccCcEeCCchHhccchhhccchhhhcccCcccccc
Confidence 87776654 46789999999999999999999999998653322 2456899999999999999999999997 556666
Q ss_pred ccceeecccccccccccccccCCCcEEEeecCe-eccCCCcccccccceeecccCcceeeeEEEEeeeccCCCCceeEee
Q psy12044 261 TFYLEIQEGKNVSLLCKVSAIPEAKITWLFDGV-PIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCVA 339 (767)
Q Consensus 261 ~~~~~v~~G~~vsL~C~a~g~P~p~itW~~~g~-~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~GtY~CvA 339 (767)
+....+.+|+.+++.|.+. |.|.+.|.++++ .+...... ..+... ..++|.|.+++.+|.|.|+|.|
T Consensus 359 ~~~~~v~~G~~~~l~C~~~--p~p~i~W~~~~~~~~~~~~~~----~~~~~~------~~g~L~i~~v~~~D~G~Y~C~a 426 (452)
T 3zyi_A 359 PRDLNISEGRMAELKCRTP--PMSSVKWLLPNGTVLSHASRH----PRISVL------NDGTLNFSHVLLSDTGVYTCMV 426 (452)
T ss_dssp CCCEECCTTSCCEECCBCC--TTSEEEEECTTSCEECSSCCC----SSCEEC------TTSCEECSSCCTTCCEEEEEEE
T ss_pred cccccccCCCEEEEEEeCC--CCCcEEEEeCCCcEeccCCCC----CCEEEC------CCCeEEEeecCHHHCEEEEEEE
Confidence 6778899999999999998 999999998543 33221110 011111 1246999999999999999999
Q ss_pred ccCCCCcccceEEEEEeecc
Q psy12044 340 ENQAGSTSSNYTIRIVLKEE 359 (767)
Q Consensus 340 ~N~~G~s~~s~sL~V~~~~~ 359 (767)
.|..|...+.+.+.|...+.
T Consensus 427 ~N~~G~~~~~~~l~v~~~~~ 446 (452)
T 3zyi_A 427 TNVAGNSNASAYLNVSTAGT 446 (452)
T ss_dssp ECSSCEEEEEEEEEC-----
T ss_pred EcCCCcEEEEEEEEEEcccc
Confidence 99999988888877765443
No 3
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=100.00 E-value=6e-37 Score=337.03 Aligned_cols=319 Identities=26% Similarity=0.411 Sum_probs=262.4
Q ss_pred hccCCCCCceecccCCeeEEEecCCCccccccCCCCCccEEEeeCCCCCCCCchhhhccCCCCccEEEccCCCCCccCcc
Q psy12044 14 IVSACPTSCICKWKGGKQTVECVNKSLITVVEGMDPNTQVLDYTGNNLKTLHNEKFQKMGLVNLQKIYLSRCRISVIDSK 93 (767)
Q Consensus 14 ~~~~CP~~C~C~~~g~~~~v~C~~~~L~~iP~~l~~~L~~L~Ls~N~L~~l~~~~f~~~~L~~L~~L~Ls~N~L~~i~p~ 93 (767)
...+||..|.|.+ ..++|++.++..+|..++..++.|+|++|.|+++.+..|.. .+.+|+.|+|++|+|+.+.+.
T Consensus 8 ~~~~Cp~~C~C~~----~~l~c~~~~l~~iP~~~~~~l~~L~Ls~N~l~~l~~~~~~~-~l~~L~~L~L~~N~i~~i~~~ 82 (361)
T 2xot_A 8 SVVSCPANCLCAS----NILSCSKQQLPNVPQSLPSYTALLDLSHNNLSRLRAEWTPT-RLTNLHSLLLSHNHLNFISSE 82 (361)
T ss_dssp CCTTCCTTCEEET----TEEECCSSCCSSCCSSCCTTCSEEECCSSCCCEECTTSSSS-CCTTCCEEECCSSCCCEECTT
T ss_pred cCCCCCCCCEECC----CEEEeCCCCcCccCccCCCCCCEEECCCCCCCccChhhhhh-cccccCEEECCCCcCCccChh
Confidence 4568999999985 47999999999999999999999999999999999988851 289999999999999999999
Q ss_pred cccCCCCCCEEEccCCCCCCCCCCCCCCCCCCcEEECCCCcCcccccCCcCCCCCccEEeccCCCccccchhhh---cCC
Q psy12044 94 AFRGLTNLVDLDFSHNVLQTVPSDTFPDYPSLMKLTLSGNPIKQIKTGAFQPLSYLVTLELSKCGIEVIEDAAF---VGL 170 (767)
Q Consensus 94 ~f~~L~~L~~L~Ls~N~Lt~l~p~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~L~~i~~~~~---~~l 170 (767)
.|.++++|++|+|++|+|+.+++..|..+++|+.|+|++|.|+.+.+..|..+++|+.|+|++|.|+.++...| ..+
T Consensus 83 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l 162 (361)
T 2xot_A 83 AFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKL 162 (361)
T ss_dssp TTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----C
T ss_pred hccCCCCCCEEECCCCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999998877 569
Q ss_pred CCCCeeeccCCccccccCCCC-CCCC--cccccCCCCCCCchhhhhhh-hhhhccCCC---CCccCCCCCCCCCCCCCcc
Q psy12044 171 DSLEWLKLDNNKITTISGSNI-LPTG--LHGIDLHHNPWTCDCLLIGL-RRWLESTKT---PMAIDPICSVPPRLSSVTI 243 (767)
Q Consensus 171 ~~L~~L~Ls~N~Lt~ip~~~~-~~~~--L~~L~Ls~N~l~C~c~l~~l-~~~l~~~~~---~~~~~~~C~~p~~l~g~~i 243 (767)
++|+.|+|++|+|+.++...+ .++. ++.|+|++|+|.|+|.+.|+ ..|...... .......|..|..+.+ +
T Consensus 163 ~~L~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N~~~C~C~l~~~~~~~~~~~~~~~~~~~~~~~C~~p~~~~~--~ 240 (361)
T 2xot_A 163 PKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPLECDCKLYQLFSHWQYRQLSSVMDFQEDLYCMHSKKLHN--I 240 (361)
T ss_dssp TTCCEEECCSSCCCCCCHHHHHHSCHHHHTTEECCSSCEECCHHHHHHHHHHHHTTCHHHHTTGGGCEEESSSCCEE--G
T ss_pred CcCCEEECCCCCCCccCHHHhhhccHhhcceEEecCCCccCCcCcHHHHHHHHHhcCCchhccCcCCEeCCChHHcC--c
Confidence 999999999999998885432 2333 47899999999999999986 567755431 2235678998876543 2
Q ss_pred cccccccccCCCCCCCCccceeecccccccccccccccCCCcEEEeecCeeccCCCcccccccceeecccCcceeeeEEE
Q psy12044 244 KQLSIDELACEPQITPSTFYLEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELL 323 (767)
Q Consensus 244 ~~l~~~~l~C~P~i~~~~~~~~v~~G~~vsL~C~a~g~P~p~itW~~~g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~ 323 (767)
..+ ..+.|.+ ..+..+++.+|+.+.+.|.+.+ |.|.+.|.+++..+...... ...+.. ..++|.
T Consensus 241 ~~~--~~~~C~~---~~~~~v~v~~G~~~~l~C~~~g-p~p~i~W~~~~~~~~~~~~~---~~r~~~-------~~~~L~ 304 (361)
T 2xot_A 241 FSL--DFFNCSE---YKESAWEAHLGDTLTIRCDTKQ-QGMTKVWVSPSNEQVLSQGS---NGSVSV-------RNGDLF 304 (361)
T ss_dssp GGC--CCTTCCS---CCCCCCEEETTCCEEECCCCSS-TTCEEEEECTTSCBCCSCCS---SSSEEE-------ETTEEE
T ss_pred ccc--ccccCCC---ccccCceecCCCeEEEEeEeeC-CCCeEEEEeCCCeeEeeccc---CCceEe-------ecCeEE
Confidence 222 2677876 2334568899999999999999 99999999966543322110 001111 235799
Q ss_pred EeeeccCCCCceeEeeccCCCCcccceEEEEE
Q psy12044 324 IYNSNIDDNGTFVCVAENQAGSTSSNYTIRIV 355 (767)
Q Consensus 324 I~nvs~sD~GtY~CvA~N~~G~s~~s~sL~V~ 355 (767)
|.+++.+|.|.|+|.|.|..|.....+.+.|.
T Consensus 305 I~~v~~~D~G~Y~C~a~N~~g~~~~~~~l~V~ 336 (361)
T 2xot_A 305 FKKVQVEDGGVYTCYAMGETFNETLSVELKVY 336 (361)
T ss_dssp ESSCCTTSCEEEEEEEECSSCEEEEEEEEEEE
T ss_pred EeecCcccCEEEEEEEecCCCccEEEEEEEEE
Confidence 99999999999999999999888777766663
No 4
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=3.3e-33 Score=317.78 Aligned_cols=324 Identities=27% Similarity=0.467 Sum_probs=226.2
Q ss_pred cCCCCCceecccCCeeEEEecCCCccccccCCCCCccEEEeeCCCCCCCCchhhhccCCCCccEEEccCCCCCccCcccc
Q psy12044 16 SACPTSCICKWKGGKQTVECVNKSLITVVEGMDPNTQVLDYTGNNLKTLHNEKFQKMGLVNLQKIYLSRCRISVIDSKAF 95 (767)
Q Consensus 16 ~~CP~~C~C~~~g~~~~v~C~~~~L~~iP~~l~~~L~~L~Ls~N~L~~l~~~~f~~~~L~~L~~L~Ls~N~L~~i~p~~f 95 (767)
.+||..|.|... ...|+|.+.++..+|..++++++.|+|++|.|+++.+..|.. +++|+.|+|++|.|+++.|.+|
T Consensus 1 ~~Cp~~C~C~~~--~~~v~c~~~~l~~ip~~~~~~l~~L~L~~n~l~~~~~~~~~~--l~~L~~L~L~~n~i~~~~~~~~ 76 (477)
T 2id5_A 1 TGCPPRCECSAQ--DRAVLCHRKRFVAVPEGIPTETRLLDLGKNRIKTLNQDEFAS--FPHLEELELNENIVSAVEPGAF 76 (477)
T ss_dssp CCCSTTCEEETT--TTEEECCSCCCSSCCSCCCTTCSEEECCSSCCCEECTTTTTT--CTTCCEEECTTSCCCEECTTTT
T ss_pred CcccCCCeECCC--CCEEEeCCCCcCcCCCCCCCCCcEEECCCCccceECHhHccC--CCCCCEEECCCCccCEeChhhh
Confidence 379999999743 357999999999999999999999999999999998888874 8888888888888888888888
Q ss_pred cCCCCCCEEEccCCCCCCCCCCCCCCCCCCcEEECCCCcCcccccCCc------------------------CCCCCccE
Q psy12044 96 RGLTNLVDLDFSHNVLQTVPSDTFPDYPSLMKLTLSGNPIKQIKTGAF------------------------QPLSYLVT 151 (767)
Q Consensus 96 ~~L~~L~~L~Ls~N~Lt~l~p~~f~~l~~L~~L~Ls~N~l~~l~~~~~------------------------~~l~~L~~ 151 (767)
.++++|++|+|++|.|+.+++..|..+++|+.|+|++|.++++.+..| ..+++|+.
T Consensus 77 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 156 (477)
T 2id5_A 77 NNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQ 156 (477)
T ss_dssp TTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCE
T ss_pred hCCccCCEEECCCCcCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCE
Confidence 888888888888888888777777777777777776666554433332 22333333
Q ss_pred EeccCCCccccch-------------------------------------------------------------------
Q psy12044 152 LELSKCGIEVIED------------------------------------------------------------------- 164 (767)
Q Consensus 152 L~Ls~N~L~~i~~------------------------------------------------------------------- 164 (767)
|+|++|.++++++
T Consensus 157 L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l 236 (477)
T 2id5_A 157 LTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNL 236 (477)
T ss_dssp EEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCC
T ss_pred EECCCCcCcccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcc
Confidence 3333332222211
Q ss_pred -----hhhcCCCCCCeeeccCC------------------------------------------------ccccccCCCC
Q psy12044 165 -----AAFVGLDSLEWLKLDNN------------------------------------------------KITTISGSNI 191 (767)
Q Consensus 165 -----~~~~~l~~L~~L~Ls~N------------------------------------------------~Lt~ip~~~~ 191 (767)
..|..+++|+.|+|++| +|+.++...+
T Consensus 237 ~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~ 316 (477)
T 2id5_A 237 TAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVF 316 (477)
T ss_dssp CSCCHHHHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGB
T ss_pred cccCHHHhcCccccCeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHc
Confidence 11222233333333333 3333332221
Q ss_pred -CCCCcccccCCCCCCCchhhhhhhhhhhccCCCCCccCCCCCCCCCCCCCccccccc----ccccCC-CCCCC-Cccce
Q psy12044 192 -LPTGLHGIDLHHNPWTCDCLLIGLRRWLESTKTPMAIDPICSVPPRLSSVTIKQLSI----DELACE-PQITP-STFYL 264 (767)
Q Consensus 192 -~~~~L~~L~Ls~N~l~C~c~l~~l~~~l~~~~~~~~~~~~C~~p~~l~g~~i~~l~~----~~l~C~-P~i~~-~~~~~ 264 (767)
.+++|+.|+|++|+|.|+|.+.|+..|...... ......|..|..+.|..+.++.. ..+.|. |.+.. .+...
T Consensus 317 ~~l~~L~~L~l~~N~l~c~c~~~~~~~~~~~~~~-~~~~~~C~~p~~~~g~~l~~~~~~~~~~~~~C~~P~i~~~~~~~~ 395 (477)
T 2id5_A 317 HSVGNLETLILDSNPLACDCRLLWVFRRRWRLNF-NRQQPTCATPEFVQGKEFKDFPDVLLPNYFTCRRARIRDRKAQQV 395 (477)
T ss_dssp SCGGGCCEEECCSSCEECSGGGHHHHTTTTSSCC-TTCCCBEEESGGGTTCBGGGSCSSCCTTSSCCEEEEESCCSCEEE
T ss_pred CCCcccCEEEccCCCccCccchHhHHhhhhcccc-CccCceeCCchHHcCCchhhCccccccceeEeccccccccccccE
Confidence 235677788999999999999999887653322 23467899999999998877654 357786 33332 34667
Q ss_pred eecccccccccccccccCCCcEEEeecCeeccCCCcccccccceeecccCcceeeeEEEEeeeccCCCCceeEeeccCCC
Q psy12044 265 EIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCVAENQAG 344 (767)
Q Consensus 265 ~v~~G~~vsL~C~a~g~P~p~itW~~~g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~GtY~CvA~N~~G 344 (767)
.+.+|+.+.+.|.+.+.|.|.++|.+++..+...... ..+.... .++|.|.++..+|.|.|+|.|.|..|
T Consensus 396 ~v~~G~~v~l~C~~~g~P~p~i~W~~~~~~~~~~~~~----~~~~~~~------~~~L~i~~v~~~d~G~Y~C~a~N~~g 465 (477)
T 2id5_A 396 FVDEGHTVQFVCRADGDPPPAILWLSPRKHLVSAKSN----GRLTVFP------DGTLEVRYAQVQDNGTYLCIAANAGG 465 (477)
T ss_dssp EEETTCCEEECCCEEEESCCEEEEECTTSCBC-----------CEECT------TSCEEESSCCSTTCEEEEEEEEETTE
T ss_pred EEeCCCeEEEEEeccccCCCEEEEEECCccccccCCC----ceEEeCC------CCEEEEeeCChHHCEEEEEEEEeCCC
Confidence 8899999999999999999999999987655321110 1111111 24699999999999999999999999
Q ss_pred CcccceEEEE
Q psy12044 345 STSSNYTIRI 354 (767)
Q Consensus 345 ~s~~s~sL~V 354 (767)
.....+.+.|
T Consensus 466 ~~~~~~~l~V 475 (477)
T 2id5_A 466 NDSMPAHLHV 475 (477)
T ss_dssp EEEEEEEEEE
T ss_pred cEEEEEEEEE
Confidence 8776666554
No 5
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.96 E-value=6e-29 Score=254.30 Aligned_cols=210 Identities=27% Similarity=0.476 Sum_probs=161.1
Q ss_pred ccCCCCCceecccCCeeEEEecCCCccccccCCCCCccEEEeeCCCCCCCCchhhhccCCCCccEEEccCCCCCccCccc
Q psy12044 15 VSACPTSCICKWKGGKQTVECVNKSLITVVEGMDPNTQVLDYTGNNLKTLHNEKFQKMGLVNLQKIYLSRCRISVIDSKA 94 (767)
Q Consensus 15 ~~~CP~~C~C~~~g~~~~v~C~~~~L~~iP~~l~~~L~~L~Ls~N~L~~l~~~~f~~~~L~~L~~L~Ls~N~L~~i~p~~ 94 (767)
+..||+.|.|.| ..|+|++.++..+|..++++++.|+|++|.|+++++..|.. +++|+.|+|++|.|+++.+..
T Consensus 2 ~~~CP~~C~C~~----~~v~c~~~~l~~iP~~l~~~l~~L~l~~n~i~~i~~~~~~~--l~~L~~L~Ls~N~i~~~~~~~ 75 (220)
T 2v9t_B 2 SLHCPAACTCSN----NIVDCRGKGLTEIPTNLPETITEIRLEQNTIKVIPPGAFSP--YKKLRRIDLSNNQISELAPDA 75 (220)
T ss_dssp CCCSCTTSEEET----TEEECTTSCCSSCCSSCCTTCCEEECCSSCCCEECTTSSTT--CTTCCEEECCSSCCCEECTTT
T ss_pred CCCCCCCCEECC----CEEEcCCCCcCcCCCccCcCCCEEECCCCcCCCcCHhHhhC--CCCCCEEECCCCcCCCcCHHH
Confidence 568999999987 46999999999999998888889998888888887777763 777888888888777777777
Q ss_pred ccCCCCCCEEEccCCCCCCCCCCCCCCCCCCcEEECCCCcCcccccCCcCCCCCccEEeccCCCccccchhhhcCCCCCC
Q psy12044 95 FRGLTNLVDLDFSHNVLQTVPSDTFPDYPSLMKLTLSGNPIKQIKTGAFQPLSYLVTLELSKCGIEVIEDAAFVGLDSLE 174 (767)
Q Consensus 95 f~~L~~L~~L~Ls~N~Lt~l~p~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~L~~i~~~~~~~l~~L~ 174 (767)
|.++++|++|+|++|.|+.+++..|..+++|+.|+|++|.|+++.+..|..+++|+.|+|++|.|+++++..|.
T Consensus 76 ~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~------ 149 (220)
T 2v9t_B 76 FQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFS------ 149 (220)
T ss_dssp TTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTT------
T ss_pred hhCCcCCCEEECCCCcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHh------
Confidence 77777777777777777777766666666666666666666666655555555555555555555544443333
Q ss_pred eeeccCCccccccCCCCCCCCcccccCCCCCCCchhhhhhhhhhhccCCCCCccCCCCCCCCCCCCCcccccccccccCC
Q psy12044 175 WLKLDNNKITTISGSNILPTGLHGIDLHHNPWTCDCLLIGLRRWLESTKTPMAIDPICSVPPRLSSVTIKQLSIDELACE 254 (767)
Q Consensus 175 ~L~Ls~N~Lt~ip~~~~~~~~L~~L~Ls~N~l~C~c~l~~l~~~l~~~~~~~~~~~~C~~p~~l~g~~i~~l~~~~l~C~ 254 (767)
.+++|+.|+|++|+|.|+|.+.|+..|+...... .....|..|..++|..+.+++..++.|.
T Consensus 150 -----------------~l~~L~~L~L~~N~~~c~c~l~~l~~~l~~~~~~-~~~~~C~~P~~l~g~~l~~l~~~~~~c~ 211 (220)
T 2v9t_B 150 -----------------PLRAIQTMHLAQNPFICDCHLKWLADYLHTNPIE-TSGARCTSPRRLANKRIGQIKSKKFRCS 211 (220)
T ss_dssp -----------------TCTTCCEEECCSSCEECSGGGHHHHHHHHHCCCB-CSCCBEEESGGGTTCBGGGSCGGGCCC-
T ss_pred -----------------CCCCCCEEEeCCCCcCCCCccHHHHHHHHhCCCC-ccCCCcCCchHHcCCchhhCCHHHCcCc
Confidence 3456777888999999999999999998875432 3567899999999999999999999885
No 6
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.95 E-value=5.7e-28 Score=247.07 Aligned_cols=211 Identities=29% Similarity=0.519 Sum_probs=159.5
Q ss_pred ccCCCCCceecccCCeeEEEecCCCccccccCCCCCccEEEeeCCCCCCCCc-hhhhccCCCCccEEEccCCCCCccCcc
Q psy12044 15 VSACPTSCICKWKGGKQTVECVNKSLITVVEGMDPNTQVLDYTGNNLKTLHN-EKFQKMGLVNLQKIYLSRCRISVIDSK 93 (767)
Q Consensus 15 ~~~CP~~C~C~~~g~~~~v~C~~~~L~~iP~~l~~~L~~L~Ls~N~L~~l~~-~~f~~~~L~~L~~L~Ls~N~L~~i~p~ 93 (767)
..+||+.|.|.|. .++|++..+..+|..++..++.|+|++|.|+++.+ ..|.. +++|+.|+|++|.|+++.+.
T Consensus 2 ~~~CP~~C~C~~~----~l~~s~n~l~~iP~~~~~~~~~L~L~~N~l~~~~~~~~~~~--l~~L~~L~L~~N~i~~i~~~ 75 (220)
T 2v70_A 2 SLACPEKCRCEGT----TVDCSNQKLNKIPEHIPQYTAELRLNNNEFTVLEATGIFKK--LPQLRKINFSNNKITDIEEG 75 (220)
T ss_dssp --CCCTTCEEETT----EEECCSSCCSSCCSCCCTTCSEEECCSSCCCEECCCCCGGG--CTTCCEEECCSSCCCEECTT
T ss_pred CCCCCCCCEECCC----EeEeCCCCcccCccCCCCCCCEEEcCCCcCCccCchhhhcc--CCCCCEEECCCCcCCEECHH
Confidence 4689999999974 69999999999999988888899999999888754 44553 67777777777777777776
Q ss_pred cccCCCCCCEEEccCCCCCCCCCCCCCCCCCCcEEECCCCcCcccccCCcCCCCCccEEeccCCCccccchhhhcCCCCC
Q psy12044 94 AFRGLTNLVDLDFSHNVLQTVPSDTFPDYPSLMKLTLSGNPIKQIKTGAFQPLSYLVTLELSKCGIEVIEDAAFVGLDSL 173 (767)
Q Consensus 94 ~f~~L~~L~~L~Ls~N~Lt~l~p~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~L~~i~~~~~~~l~~L 173 (767)
+|.++++|++|+|++|.|+++++..|..+++|+.|+|++|.|+++.+..|..+++|+.|+|++|.|+++.+..|.
T Consensus 76 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~----- 150 (220)
T 2v70_A 76 AFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFD----- 150 (220)
T ss_dssp TTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTT-----
T ss_pred HhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhc-----
Confidence 777777777777777777777766666666666666666666666666666555566555555555555444443
Q ss_pred CeeeccCCccccccCCCCCCCCcccccCCCCCCCchhhhhhhhhhhccCCCCCccCCCCCCCCCCCCCcccccccccccC
Q psy12044 174 EWLKLDNNKITTISGSNILPTGLHGIDLHHNPWTCDCLLIGLRRWLESTKTPMAIDPICSVPPRLSSVTIKQLSIDELAC 253 (767)
Q Consensus 174 ~~L~Ls~N~Lt~ip~~~~~~~~L~~L~Ls~N~l~C~c~l~~l~~~l~~~~~~~~~~~~C~~p~~l~g~~i~~l~~~~l~C 253 (767)
.+++|+.|+|++|+|.|+|.+.|+..|+..... ....+.|..|..++|..+.+++...+.|
T Consensus 151 ------------------~l~~L~~L~L~~N~l~c~c~l~~l~~~~~~~~~-~~~~~~C~~P~~l~g~~l~~l~~~~~~~ 211 (220)
T 2v70_A 151 ------------------TLHSLSTLNLLANPFNCNCYLAWLGEWLRKKRI-VTGNPRCQKPYFLKEIPIQDVAIQDFTC 211 (220)
T ss_dssp ------------------TCTTCCEEECCSCCEECSGGGHHHHHHHHHSCC-BCCCCEEEESGGGTTEEGGGSCGGGCCC
T ss_pred ------------------CCCCCCEEEecCcCCcCCCchHHHHHHHHhcCc-cccCCccCCChHHCCCChhhCCHHHccc
Confidence 345667788899999999999999999986543 3456789999999999999999888887
Q ss_pred CC
Q psy12044 254 EP 255 (767)
Q Consensus 254 ~P 255 (767)
..
T Consensus 212 ~~ 213 (220)
T 2v70_A 212 DD 213 (220)
T ss_dssp CC
T ss_pred cc
Confidence 53
No 7
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.95 E-value=3.6e-27 Score=249.79 Aligned_cols=233 Identities=30% Similarity=0.538 Sum_probs=161.7
Q ss_pred CCCCCceecccCCeeEEEecCCCccccccCCCCCccEEEeeCCCCCCCCchhhhccCCCCccEEEccCCCCCccCccccc
Q psy12044 17 ACPTSCICKWKGGKQTVECVNKSLITVVEGMDPNTQVLDYTGNNLKTLHNEKFQKMGLVNLQKIYLSRCRISVIDSKAFR 96 (767)
Q Consensus 17 ~CP~~C~C~~~g~~~~v~C~~~~L~~iP~~l~~~L~~L~Ls~N~L~~l~~~~f~~~~L~~L~~L~Ls~N~L~~i~p~~f~ 96 (767)
+||..|.|.... ...++|++.++..+|..+++++++|+|++|.|+.+++..|.. +++|+.|+|++|.|+++.+..|.
T Consensus 1 ~CP~~C~C~~~~-~~~~~c~~~~l~~ip~~~~~~l~~L~l~~n~i~~~~~~~~~~--~~~L~~L~l~~n~l~~~~~~~~~ 77 (285)
T 1ozn_A 1 PCPGACVCYNEP-KVTTSCPQQGLQAVPVGIPAASQRIFLHGNRISHVPAASFRA--CRNLTILWLHSNVLARIDAAAFT 77 (285)
T ss_dssp CCCTTCEEECSS-SCEEECCSSCCSSCCTTCCTTCSEEECTTSCCCEECTTTTTT--CTTCCEEECCSSCCCEECTTTTT
T ss_pred CcCCCceECCCC-CeEEEcCcCCcccCCcCCCCCceEEEeeCCcCCccCHHHccc--CCCCCEEECCCCccceeCHhhcC
Confidence 699999997543 578999999999999999889999999999988888777764 66777777777766666666666
Q ss_pred CCCCCCEEEccCCC-CCCCCCCCCCCCCC------------------------CcEEECCCCcCcccccCCcCCCCCccE
Q psy12044 97 GLTNLVDLDFSHNV-LQTVPSDTFPDYPS------------------------LMKLTLSGNPIKQIKTGAFQPLSYLVT 151 (767)
Q Consensus 97 ~L~~L~~L~Ls~N~-Lt~l~p~~f~~l~~------------------------L~~L~Ls~N~l~~l~~~~~~~l~~L~~ 151 (767)
++++|++|+|++|. ++.+.+..|..+++ |+.|+|++|.++.+++..|..+++|+.
T Consensus 78 ~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 157 (285)
T 1ozn_A 78 GLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTH 157 (285)
T ss_dssp TCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred CccCCCEEeCCCCCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccE
Confidence 66666666666664 55554444544444 455555555555444444555566666
Q ss_pred EeccCCCccccchhhhcCCCCCCeeeccCCccccccCC-------------------------CCCCCCcccccCCCCCC
Q psy12044 152 LELSKCGIEVIEDAAFVGLDSLEWLKLDNNKITTISGS-------------------------NILPTGLHGIDLHHNPW 206 (767)
Q Consensus 152 L~Ls~N~L~~i~~~~~~~l~~L~~L~Ls~N~Lt~ip~~-------------------------~~~~~~L~~L~Ls~N~l 206 (767)
|+|++|.|+++++..|..+++|+.|+|++|.|+.+.+. +...++|+.|+|++|+|
T Consensus 158 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~ 237 (285)
T 1ozn_A 158 LFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPW 237 (285)
T ss_dssp EECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCE
T ss_pred EECCCCcccccCHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCc
Confidence 66666666655554455555555555555555443211 11235677788899999
Q ss_pred CchhhhhhhhhhhccCCCCCccCCCCCCCCCCCCCccccccccccc-C
Q psy12044 207 TCDCLLIGLRRWLESTKTPMAIDPICSVPPRLSSVTIKQLSIDELA-C 253 (767)
Q Consensus 207 ~C~c~l~~l~~~l~~~~~~~~~~~~C~~p~~l~g~~i~~l~~~~l~-C 253 (767)
.|+|.+.|+..|++.... ......|..|..+.|..+.++...++. |
T Consensus 238 ~c~~~~~~~~~~l~~~~~-~~~~~~c~~p~~l~g~~l~~l~~~~l~~C 284 (285)
T 1ozn_A 238 VCDCRARPLWAWLQKFRG-SSSEVPCSLPQRLAGRDLKRLAANDLQGC 284 (285)
T ss_dssp ECSGGGHHHHHHHHHCCS-EECCCBEEESGGGTTCBGGGSCGGGSCCC
T ss_pred cCCCCcHHHHHHHHhccc-ccCccccCCchHhCCcChhhcCHHHhccC
Confidence 999999999999987653 235678999999999999988887765 5
No 8
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.95 E-value=5.9e-27 Score=243.90 Aligned_cols=203 Identities=30% Similarity=0.539 Sum_probs=188.0
Q ss_pred cCCCCC--ceecccCCeeEEEecCCCccccccCCCCCccEEEeeCCCCCCCCchhhhccCCCCccEEEccCCCCCccCcc
Q psy12044 16 SACPTS--CICKWKGGKQTVECVNKSLITVVEGMDPNTQVLDYTGNNLKTLHNEKFQKMGLVNLQKIYLSRCRISVIDSK 93 (767)
Q Consensus 16 ~~CP~~--C~C~~~g~~~~v~C~~~~L~~iP~~l~~~L~~L~Ls~N~L~~l~~~~f~~~~L~~L~~L~Ls~N~L~~i~p~ 93 (767)
.+||.. |.|.. +...++|++..+..+|..++++++.|+|++|.|+++.+..|.. +++|+.|+|++|.|+++.+.
T Consensus 2 ~~Cp~~~gC~C~~--~~~~l~~~~~~l~~~p~~~~~~l~~L~L~~n~l~~~~~~~~~~--l~~L~~L~L~~n~l~~~~~~ 77 (251)
T 3m19_A 2 KTCETVTGCTCNE--GKKEVDCQGKSLDSVPSGIPADTEKLDLQSTGLATLSDATFRG--LTKLTWLNLDYNQLQTLSAG 77 (251)
T ss_dssp --CHHHHSSEEEG--GGTEEECTTCCCSSCCSCCCTTCCEEECTTSCCCCCCTTTTTT--CTTCCEEECTTSCCCCCCTT
T ss_pred ccCCCCCceEcCC--CCeEEecCCCCccccCCCCCCCCCEEEccCCCcCccCHhHhcC--cccCCEEECCCCcCCccCHh
Confidence 369997 99953 2467999999999999999999999999999999999988884 89999999999999999999
Q ss_pred cccCCCCCCEEEccCCCCCCCCCCCCCCCCCCcEEECCCCcCcccccCCcCCCCCccEEeccCCCccccchhhhcCCCCC
Q psy12044 94 AFRGLTNLVDLDFSHNVLQTVPSDTFPDYPSLMKLTLSGNPIKQIKTGAFQPLSYLVTLELSKCGIEVIEDAAFVGLDSL 173 (767)
Q Consensus 94 ~f~~L~~L~~L~Ls~N~Lt~l~p~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~L~~i~~~~~~~l~~L 173 (767)
.|.++++|++|+|++|.|+++++..|..+++|+.|+|++|.|+++++..|..+++|+.|+|++|.|+++++..|..+++|
T Consensus 78 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L 157 (251)
T 3m19_A 78 VFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNL 157 (251)
T ss_dssp TTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred HhccCCcCCEEECCCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCC
Confidence 99999999999999999999999999999999999999999999999889999999999999999999999889999999
Q ss_pred CeeeccCCccccccCCCC-CCCCcccccCCCCCCCch-hhhhhhhhhhccC
Q psy12044 174 EWLKLDNNKITTISGSNI-LPTGLHGIDLHHNPWTCD-CLLIGLRRWLEST 222 (767)
Q Consensus 174 ~~L~Ls~N~Lt~ip~~~~-~~~~L~~L~Ls~N~l~C~-c~l~~l~~~l~~~ 222 (767)
+.|+|++|+|+.+++..+ .+++|+.|+|++|+|.|+ |.+.|+..|+...
T Consensus 158 ~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~~~~~l~~~~~~~ 208 (251)
T 3m19_A 158 QTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCSRCEILYLSQWIREN 208 (251)
T ss_dssp CEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCTTSTTHHHHHHHHHHS
T ss_pred CEEECCCCcCCccCHHHHhCCCCCCEEEeeCCceeCCccccHHHHHHHHhc
Confidence 999999999999987544 568999999999999999 9999999998765
No 9
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.93 E-value=5.6e-25 Score=234.40 Aligned_cols=200 Identities=26% Similarity=0.407 Sum_probs=173.1
Q ss_pred CceecccCCeeEEEecCCCccccccCCCCCccEEEeeCCCCCCCCchhhhccCCCCccEEEccCCCCCcc----------
Q psy12044 21 SCICKWKGGKQTVECVNKSLITVVEGMDPNTQVLDYTGNNLKTLHNEKFQKMGLVNLQKIYLSRCRISVI---------- 90 (767)
Q Consensus 21 ~C~C~~~g~~~~v~C~~~~L~~iP~~l~~~L~~L~Ls~N~L~~l~~~~f~~~~L~~L~~L~Ls~N~L~~i---------- 90 (767)
.|.|..-...+.++|.+.++..+|..++++++.|+|++|.|+++.+..|.. +++|+.|+|++|.|+.+
T Consensus 3 ~C~~~~l~~l~~l~~~~~~l~~ip~~~~~~l~~L~L~~N~l~~~~~~~~~~--l~~L~~L~L~~n~l~~~~~~~~l~~L~ 80 (290)
T 1p9a_G 3 ICEVSKVASHLEVNCDKRNLTALPPDLPKDTTILHLSENLLYTFSLATLMP--YTRLTQLNLDRAELTKLQVDGTLPVLG 80 (290)
T ss_dssp SSEEECSTTCCEEECTTSCCSSCCSCCCTTCCEEECTTSCCSEEEGGGGTT--CTTCCEEECTTSCCCEEECCSCCTTCC
T ss_pred cccccccCCccEEECCCCCCCcCCCCCCCCCCEEEcCCCcCCccCHHHhhc--CCCCCEEECCCCccCcccCCCCCCcCC
Confidence 476765445688999999999999999999999999999999998877764 55565555555555433
Q ss_pred -----------CcccccCCCCCCEEEccCCCCCCCCCCCCCCCCCCcEEECCCCcCcccccCCcCCCCCccEEeccCCCc
Q psy12044 91 -----------DSKAFRGLTNLVDLDFSHNVLQTVPSDTFPDYPSLMKLTLSGNPIKQIKTGAFQPLSYLVTLELSKCGI 159 (767)
Q Consensus 91 -----------~p~~f~~L~~L~~L~Ls~N~Lt~l~p~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~L 159 (767)
.|..+.++++|++|+|++|+|+++++..|..+++|+.|+|++|.|+.+++..|..+++|+.|+|++|+|
T Consensus 81 ~L~Ls~N~l~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l 160 (290)
T 1p9a_G 81 TLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNL 160 (290)
T ss_dssp EEECCSSCCSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCC
T ss_pred EEECCCCcCCcCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcC
Confidence 244577888899999999999999888899999999999999999999988889999999999999999
Q ss_pred cccchhhhcCCCCCCeeeccCCccccccCCCCCCCCcccccCCCCCCCchhhhhhhhhhhccC
Q psy12044 160 EVIEDAAFVGLDSLEWLKLDNNKITTISGSNILPTGLHGIDLHHNPWTCDCLLIGLRRWLEST 222 (767)
Q Consensus 160 ~~i~~~~~~~l~~L~~L~Ls~N~Lt~ip~~~~~~~~L~~L~Ls~N~l~C~c~l~~l~~~l~~~ 222 (767)
+.+++..|..+++|+.|+|++|+|+.+|..++...+|+.|+|++|+|.|+|.+.|+..|+...
T Consensus 161 ~~l~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~~~~L~~l~L~~Np~~C~c~~~~l~~wl~~~ 223 (290)
T 1p9a_G 161 TELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNPWLCNCEILYFRRWLQDN 223 (290)
T ss_dssp SCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCCCSEEECCSCCBCCSGGGHHHHHHHHHT
T ss_pred CccCHHHhcCcCCCCEEECCCCcCCccChhhcccccCCeEEeCCCCccCcCccHHHHHHHHhC
Confidence 999988888999999999999999999999888889999999999999999999999999865
No 10
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.93 E-value=1.9e-25 Score=238.78 Aligned_cols=224 Identities=26% Similarity=0.433 Sum_probs=153.8
Q ss_pred CCCCceecccCCeeEEEecCCCccccccCCCCCccEEEeeCCCCCCCCchhhhccCCCCccEEEccCCCCCcc-------
Q psy12044 18 CPTSCICKWKGGKQTVECVNKSLITVVEGMDPNTQVLDYTGNNLKTLHNEKFQKMGLVNLQKIYLSRCRISVI------- 90 (767)
Q Consensus 18 CP~~C~C~~~g~~~~v~C~~~~L~~iP~~l~~~L~~L~Ls~N~L~~l~~~~f~~~~L~~L~~L~Ls~N~L~~i------- 90 (767)
||..|.|.|. .++|++.++..+|..+++++++|+|++|.|+.++...|.. +++|+.|+|++|.|+.+
T Consensus 1 CP~~C~C~~~----~l~c~~~~l~~ip~~~~~~l~~L~L~~n~l~~i~~~~~~~--l~~L~~L~L~~n~l~~~~~~~~~~ 74 (306)
T 2z66_A 1 CPSRCSCSGT----EIRCNSKGLTSVPTGIPSSATRLELESNKLQSLPHGVFDK--LTQLTKLSLSSNGLSFKGCCSQSD 74 (306)
T ss_dssp CCTTCEEETT----EEECCSSCCSSCCSCCCTTCCEEECCSSCCCCCCTTTTTT--CTTCSEEECCSSCCCEEEEEEHHH
T ss_pred CcCCCeeCCC----EEEcCCCCcccCCCCCCCCCCEEECCCCccCccCHhHhhc--cccCCEEECCCCccCcccCccccc
Confidence 9999999985 5999999999999999999999999999998888766653 55555555555554421
Q ss_pred ------------------------------------------Cc-ccccCCCCCCEEEccCCCCCCCCCCCCCCCCCCcE
Q psy12044 91 ------------------------------------------DS-KAFRGLTNLVDLDFSHNVLQTVPSDTFPDYPSLMK 127 (767)
Q Consensus 91 ------------------------------------------~p-~~f~~L~~L~~L~Ls~N~Lt~l~p~~f~~l~~L~~ 127 (767)
.+ ..|..+++|++|+|++|.+++..+..|..+++|+.
T Consensus 75 ~~~~~L~~L~Ls~n~i~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 154 (306)
T 2z66_A 75 FGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEV 154 (306)
T ss_dssp HSCSCCCEEECCSCSEEEEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCE
T ss_pred ccccccCEEECCCCccccChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCE
Confidence 11 23444555555555555554444444444445555
Q ss_pred EECCC-------------------------CcCcccccCCcCCCCCccEEeccCCCccccchhhhcCCCCCCeeeccCCc
Q psy12044 128 LTLSG-------------------------NPIKQIKTGAFQPLSYLVTLELSKCGIEVIEDAAFVGLDSLEWLKLDNNK 182 (767)
Q Consensus 128 L~Ls~-------------------------N~l~~l~~~~~~~l~~L~~L~Ls~N~L~~i~~~~~~~l~~L~~L~Ls~N~ 182 (767)
|+|++ |.++++.+..|..+++|+.|+|++|.|+++.+..|..+++|+.|+|++|.
T Consensus 155 L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 234 (306)
T 2z66_A 155 LKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNH 234 (306)
T ss_dssp EECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSC
T ss_pred EECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCC
Confidence 55554 44444444555555666666666666666655556666667777777777
Q ss_pred cccccCC-CCCC-CCcccccCCCCCCCchhhhhhhhhhhccCCCC--CccCCCCCCCCCCCCCcccccc
Q psy12044 183 ITTISGS-NILP-TGLHGIDLHHNPWTCDCLLIGLRRWLESTKTP--MAIDPICSVPPRLSSVTIKQLS 247 (767)
Q Consensus 183 Lt~ip~~-~~~~-~~L~~L~Ls~N~l~C~c~l~~l~~~l~~~~~~--~~~~~~C~~p~~l~g~~i~~l~ 247 (767)
|+.+.+. +... .+|+.|+|++|+|.|+|.+.|+..|+...... ......|..|..+.|..+..++
T Consensus 235 l~~~~~~~~~~~~~~L~~L~L~~N~~~~~c~~~~~~~~l~~~~~~~~~~~~~~C~~p~~~~g~~~~~~~ 303 (306)
T 2z66_A 235 IMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLVEVERMECATPSDKQGMPVLSLN 303 (306)
T ss_dssp CCBCSSSSCCCCCTTCCEEECTTCCEECSGGGHHHHHHHHHTGGGBSCGGGCBEEESGGGTTCBGGGCC
T ss_pred CcccCHHHHHhhhccCCEEEccCCCeecccChHHHHHHHHhhhhhhccccccccCCchhhCCceeeeec
Confidence 7655433 3333 58999999999999999999999999865432 2357789999999998887663
No 11
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.92 E-value=3.8e-24 Score=225.10 Aligned_cols=223 Identities=26% Similarity=0.504 Sum_probs=153.9
Q ss_pred CCceecccCCeeEEEecCCCccccccCCCCCccEEEeeCCCCCCCCchhhhccCCCCccEEEccCCCCCccCcccccCCC
Q psy12044 20 TSCICKWKGGKQTVECVNKSLITVVEGMDPNTQVLDYTGNNLKTLHNEKFQKMGLVNLQKIYLSRCRISVIDSKAFRGLT 99 (767)
Q Consensus 20 ~~C~C~~~g~~~~v~C~~~~L~~iP~~l~~~L~~L~Ls~N~L~~l~~~~f~~~~L~~L~~L~Ls~N~L~~i~p~~f~~L~ 99 (767)
..|.|.. ....++|++.++..+|..++++++.|+|++|.|+.+++..|.. +++|+.|+|++|.|+.+.+..|.+++
T Consensus 10 ~~C~c~~--~~~~l~~~~~~l~~ip~~~~~~l~~L~l~~n~l~~~~~~~~~~--l~~L~~L~l~~n~l~~i~~~~~~~l~ 85 (270)
T 2o6q_A 10 GVCSCNN--NKNSVDCSSKKLTAIPSNIPADTKKLDLQSNKLSSLPSKAFHR--LTKLRLLYLNDNKLQTLPAGIFKELK 85 (270)
T ss_dssp CSBEEET--TTTEEECTTSCCSSCCSCCCTTCSEEECCSSCCSCCCTTSSSS--CTTCCEEECCSSCCSCCCTTTTSSCT
T ss_pred CCCEeCC--CCCEEEccCCCCCccCCCCCCCCCEEECcCCCCCeeCHHHhcC--CCCCCEEECCCCccCeeChhhhcCCC
Confidence 4688853 2468999999999999999888999999999988888777763 66667766666666666555555555
Q ss_pred CCCEEEccCCCCCCCCCCC------------------------CCCCCCCcEEECCCCcCcccccCCcCCCCCccEEecc
Q psy12044 100 NLVDLDFSHNVLQTVPSDT------------------------FPDYPSLMKLTLSGNPIKQIKTGAFQPLSYLVTLELS 155 (767)
Q Consensus 100 ~L~~L~Ls~N~Lt~l~p~~------------------------f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls 155 (767)
+|++|+|++|.|+.+++.. |..+++|+.|+|++|.|+.+++..|..+++|+.|+|+
T Consensus 86 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~ 165 (270)
T 2o6q_A 86 NLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLY 165 (270)
T ss_dssp TCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCCEEECCCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEec
Confidence 5666555555555555444 4445555555555555555555556666677777777
Q ss_pred CCCccccchhhhcCCCCCCeeeccCCccccccCCCC-CCCCcccccCCCCCCCchhh-hhhhhhhhccCCC---CCccCC
Q psy12044 156 KCGIEVIEDAAFVGLDSLEWLKLDNNKITTISGSNI-LPTGLHGIDLHHNPWTCDCL-LIGLRRWLESTKT---PMAIDP 230 (767)
Q Consensus 156 ~N~L~~i~~~~~~~l~~L~~L~Ls~N~Lt~ip~~~~-~~~~L~~L~Ls~N~l~C~c~-l~~l~~~l~~~~~---~~~~~~ 230 (767)
+|.|+.+++..|..+++|+.|+|++|+|+.++...+ ..++|+.|+|++|+|.|+|. +.++..|+..... ......
T Consensus 166 ~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~~~~~~~~l~~~~~~~~~~~~~~ 245 (270)
T 2o6q_A 166 NNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWDCTCNGIIYMAKWLKKKADEGLGGVDTA 245 (270)
T ss_dssp SSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCSSSSSHHHHHHHHHHHHTTCSSTTCC
T ss_pred CCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCeeCCCccHHHHHHHHHhhccccccCcccc
Confidence 777777766667777788888888888887776544 46789999999999999997 7788888765422 122345
Q ss_pred CCCCCCCCCCCccccccccc
Q psy12044 231 ICSVPPRLSSVTIKQLSIDE 250 (767)
Q Consensus 231 ~C~~p~~l~g~~i~~l~~~~ 250 (767)
.|.. .+..+.++...+
T Consensus 246 ~C~~----~~~~~~~~~~~~ 261 (270)
T 2o6q_A 246 GCEK----GGKAVLEITEKD 261 (270)
T ss_dssp BBSS----SCSBGGGCCTTT
T ss_pred ccCC----CCeEeEEecchh
Confidence 6754 345555554443
No 12
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.91 E-value=4.1e-24 Score=233.43 Aligned_cols=219 Identities=29% Similarity=0.438 Sum_probs=150.7
Q ss_pred hhccCCCCCceecccCCeeEEEecCCCccccccCCCCCccEEEeeCCCCCCCCchhhhccCCCCccEEEccCCCCCccCc
Q psy12044 13 KIVSACPTSCICKWKGGKQTVECVNKSLITVVEGMDPNTQVLDYTGNNLKTLHNEKFQKMGLVNLQKIYLSRCRISVIDS 92 (767)
Q Consensus 13 ~~~~~CP~~C~C~~~g~~~~v~C~~~~L~~iP~~l~~~L~~L~Ls~N~L~~l~~~~f~~~~L~~L~~L~Ls~N~L~~i~p 92 (767)
..+..|+..|.|.|.+ .++|++..+..+|..+++++++|+|++|.|+++++..|.. +++|+.|+|++|.|+++.+
T Consensus 19 ~~~~~~~~~~~C~~~~---~c~~~~~~l~~iP~~~~~~L~~L~l~~n~i~~~~~~~~~~--l~~L~~L~L~~n~l~~~~~ 93 (353)
T 2z80_A 19 KEESSNQASLSCDRNG---ICKGSSGSLNSIPSGLTEAVKSLDLSNNRITYISNSDLQR--CVNLQALVLTSNGINTIEE 93 (353)
T ss_dssp --------CCEECTTS---EEECCSTTCSSCCTTCCTTCCEEECTTSCCCEECTTTTTT--CTTCCEEECTTSCCCEECT
T ss_pred CccCCCccCCCCCCCe---EeeCCCCCcccccccccccCcEEECCCCcCcccCHHHhcc--CCCCCEEECCCCccCccCH
Confidence 4567899999999965 4899999999999999888999999999888887766764 6777777777777777666
Q ss_pred ccccCCCCCCEEEccCCCCCCCCCCCCCCCCCCcEEECCCCcCccccc--------------------------CCcCCC
Q psy12044 93 KAFRGLTNLVDLDFSHNVLQTVPSDTFPDYPSLMKLTLSGNPIKQIKT--------------------------GAFQPL 146 (767)
Q Consensus 93 ~~f~~L~~L~~L~Ls~N~Lt~l~p~~f~~l~~L~~L~Ls~N~l~~l~~--------------------------~~~~~l 146 (767)
.+|.++++|++|+|++|.|+++++..|..+++|+.|+|++|.++.++. ..|..+
T Consensus 94 ~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l 173 (353)
T 2z80_A 94 DSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGL 173 (353)
T ss_dssp TTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTC
T ss_pred hhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCC
Confidence 666666666666666666666555445555555555555555554433 333334
Q ss_pred CCccEEeccCCCccccchh-------------------------------------------------------------
Q psy12044 147 SYLVTLELSKCGIEVIEDA------------------------------------------------------------- 165 (767)
Q Consensus 147 ~~L~~L~Ls~N~L~~i~~~------------------------------------------------------------- 165 (767)
++|+.|+|++|.++++.+.
T Consensus 174 ~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~ 253 (353)
T 2z80_A 174 TFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKK 253 (353)
T ss_dssp CEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCE
T ss_pred CCCCEEECCCCCcCccCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCccccccccccccccccchhhc
Confidence 4444444444444333221
Q ss_pred ------------------hhcCCCCCCeeeccCCccccccCCC-CCCCCcccccCCCCCCCchhh-hhhhhhhhccCCCC
Q psy12044 166 ------------------AFVGLDSLEWLKLDNNKITTISGSN-ILPTGLHGIDLHHNPWTCDCL-LIGLRRWLESTKTP 225 (767)
Q Consensus 166 ------------------~~~~l~~L~~L~Ls~N~Lt~ip~~~-~~~~~L~~L~Ls~N~l~C~c~-l~~l~~~l~~~~~~ 225 (767)
.+..+++|+.|+|++|+|+.++..+ ..+++|+.|+|++|+|.|+|. +.|+..|+......
T Consensus 254 l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~~~~~~~~l~~l~~~~~~~~~~ 333 (353)
T 2z80_A 254 FTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSRWLNKNSQK 333 (353)
T ss_dssp EEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCCCHHHHHHHHHHHHHTTTT
T ss_pred cccccccccCcchhhhHHHHhcccCCCEEECCCCCCCccCHHHHhcCCCCCEEEeeCCCccCcCCCcHHHHHHHHhcccc
Confidence 2344567888888888888888776 467899999999999999996 88999999887666
Q ss_pred CccCCCCCCCC
Q psy12044 226 MAIDPICSVPP 236 (767)
Q Consensus 226 ~~~~~~C~~p~ 236 (767)
......|..|.
T Consensus 334 ~~~~~~C~~p~ 344 (353)
T 2z80_A 334 EQGSAKCSGSG 344 (353)
T ss_dssp EESCCBBTTTC
T ss_pred CCCCcccCCCC
Confidence 55677888763
No 13
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.91 E-value=7.8e-24 Score=211.58 Aligned_cols=187 Identities=28% Similarity=0.525 Sum_probs=130.3
Q ss_pred CCCCCceecccCCeeEEEecCCCccccccCCCCCccEEEeeCCCCCCCCchhhhccCCCCccEEEccCCCCCccCccccc
Q psy12044 17 ACPTSCICKWKGGKQTVECVNKSLITVVEGMDPNTQVLDYTGNNLKTLHNEKFQKMGLVNLQKIYLSRCRISVIDSKAFR 96 (767)
Q Consensus 17 ~CP~~C~C~~~g~~~~v~C~~~~L~~iP~~l~~~L~~L~Ls~N~L~~l~~~~f~~~~L~~L~~L~Ls~N~L~~i~p~~f~ 96 (767)
+||..|.|.| +.++|++.++..+|..++.+++.|+|++|.|+++++.. .|.
T Consensus 1 ~CP~~C~C~~----~~l~~s~~~l~~ip~~~~~~l~~L~l~~n~i~~~~~~~-------------------------~~~ 51 (192)
T 1w8a_A 1 DCPAMCHCEG----TTVDCTGRGLKEIPRDIPLHTTELLLNDNELGRISSDG-------------------------LFG 51 (192)
T ss_dssp CCCTTSEEET----TEEECTTSCCSSCCSCCCTTCSEEECCSCCCCSBCCSC-------------------------SGG
T ss_pred CcCCCCEECC----CEEEcCCCCcCcCccCCCCCCCEEECCCCcCCccCCcc-------------------------ccc
Confidence 5999999998 45999999999999888777777777777777665531 233
Q ss_pred CCCCCCEEEccCCCCCCCCCCCCCCCCCCcEEECCCCcCcccccCCcCCCCCccEEeccCCCccccchhhhcCCCCCCee
Q psy12044 97 GLTNLVDLDFSHNVLQTVPSDTFPDYPSLMKLTLSGNPIKQIKTGAFQPLSYLVTLELSKCGIEVIEDAAFVGLDSLEWL 176 (767)
Q Consensus 97 ~L~~L~~L~Ls~N~Lt~l~p~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~L~~i~~~~~~~l~~L~~L 176 (767)
.+++|++|+|++|.|+++.+..|..+++|+.|+|++|.|+++++..|..+++|+.|+|++|.|+++.+..|..+
T Consensus 52 ~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l------ 125 (192)
T 1w8a_A 52 RLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHL------ 125 (192)
T ss_dssp GCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTC------
T ss_pred cCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcC------
Confidence 44444445555555555544555555555555555555555555555555566666666666665555444433
Q ss_pred eccCCccccccCCCCCCCCcccccCCCCCCCchhhhhhhhhhhccCCCCCccCCCCCCCCCCCCCcccccccccccCCCC
Q psy12044 177 KLDNNKITTISGSNILPTGLHGIDLHHNPWTCDCLLIGLRRWLESTKTPMAIDPICSVPPRLSSVTIKQLSIDELACEPQ 256 (767)
Q Consensus 177 ~Ls~N~Lt~ip~~~~~~~~L~~L~Ls~N~l~C~c~l~~l~~~l~~~~~~~~~~~~C~~p~~l~g~~i~~l~~~~l~C~P~ 256 (767)
++|+.|+|++|+|.|+|.+.|+..|+..... ....+.|..|..+++..+.++..+++.|.+.
T Consensus 126 -----------------~~L~~L~L~~N~l~c~c~l~~~~~~l~~~~~-~~~~~~C~~P~~l~~~~l~~l~~~~~~C~~~ 187 (192)
T 1w8a_A 126 -----------------NSLTSLNLASNPFNCNCHLAWFAEWLRKKSL-NGGAARCGAPSKVRDVQIKDLPHSEFKCSSE 187 (192)
T ss_dssp -----------------TTCCEEECTTCCBCCSGGGHHHHHHHHHHCC-SGGGCBBCSSTTTTTSBGGGSCTTTCCCCCC
T ss_pred -----------------CCCCEEEeCCCCccCcCcchHHHHHHHHcCC-CCCCCCCCCChHHcCCChhhCcHhhcCcCCC
Confidence 3455667788889999999999999887533 3356789999999999999999999999744
No 14
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.91 E-value=7.5e-24 Score=212.08 Aligned_cols=184 Identities=28% Similarity=0.477 Sum_probs=123.7
Q ss_pred cCCCCCceecccCCeeEEEecCCCccccccCCCCCccEEEeeCCCCCCCCchhhhccCCCCccEEEccCCCCCccCcccc
Q psy12044 16 SACPTSCICKWKGGKQTVECVNKSLITVVEGMDPNTQVLDYTGNNLKTLHNEKFQKMGLVNLQKIYLSRCRISVIDSKAF 95 (767)
Q Consensus 16 ~~CP~~C~C~~~g~~~~v~C~~~~L~~iP~~l~~~L~~L~Ls~N~L~~l~~~~f~~~~L~~L~~L~Ls~N~L~~i~p~~f 95 (767)
..||..|.|.+ ..++|++.++..+|..++++++.|+|++|.|+.++ ..|.. +++|+.|+|++|.|+.+
T Consensus 2 ~~CP~~C~C~~----~~l~~~~~~l~~ip~~~~~~l~~L~L~~n~i~~ip-~~~~~--l~~L~~L~Ls~N~i~~i----- 69 (193)
T 2wfh_A 2 SRCPTECTCLD----TVVRCSNKGLKVLPKGIPRDVTELYLDGNQFTLVP-KELSN--YKHLTLIDLSNNRISTL----- 69 (193)
T ss_dssp --CCTTCEEET----TEEECTTSCCSSCCSCCCTTCCEEECCSSCCCSCC-GGGGG--CTTCCEEECCSSCCCCC-----
T ss_pred CCCCCCCEeCC----CEEEcCCCCCCcCCCCCCCCCCEEECCCCcCchhH-HHhhc--ccCCCEEECCCCcCCEe-----
Confidence 47999999986 46999999999999888888888888887777555 33432 45555555555555544
Q ss_pred cCCCCCCEEEccCCCCCCCCCCCCCCCCCCcEEECCCCcCcccccCCcCCCCCccEEeccCCCccccchhhhcCCCCCCe
Q psy12044 96 RGLTNLVDLDFSHNVLQTVPSDTFPDYPSLMKLTLSGNPIKQIKTGAFQPLSYLVTLELSKCGIEVIEDAAFVGLDSLEW 175 (767)
Q Consensus 96 ~~L~~L~~L~Ls~N~Lt~l~p~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~L~~i~~~~~~~l~~L~~ 175 (767)
++..|..+++|+.|+|++|.|+++++..|..+++|+.|+|++|.|+.+++..|..+
T Consensus 70 -------------------~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l----- 125 (193)
T 2wfh_A 70 -------------------SNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDL----- 125 (193)
T ss_dssp -------------------CTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTC-----
T ss_pred -------------------CHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcC-----
Confidence 44445555555555555555555555445555555555555555554444333333
Q ss_pred eeccCCccccccCCCCCCCCcccccCCCCCCCchhhhhhhhhhhccCCCCCccCCCCCCCCCCCCCcccccccccccCC
Q psy12044 176 LKLDNNKITTISGSNILPTGLHGIDLHHNPWTCDCLLIGLRRWLESTKTPMAIDPICSVPPRLSSVTIKQLSIDELACE 254 (767)
Q Consensus 176 L~Ls~N~Lt~ip~~~~~~~~L~~L~Ls~N~l~C~c~l~~l~~~l~~~~~~~~~~~~C~~p~~l~g~~i~~l~~~~l~C~ 254 (767)
++|+.|+|++|+|.|+|.+.|+..|+..... ......|..|..++|..+.+++...+.|.
T Consensus 126 ------------------~~L~~L~L~~N~~~C~c~l~~l~~~~~~~~~-~~~~~~C~~P~~l~g~~l~~~~~~~~~~~ 185 (193)
T 2wfh_A 126 ------------------SALSHLAIGANPLYCDCNMQWLSDWVKSEYK-EPGIARCAGPGEMADKLLLTTPSKKFTCA 185 (193)
T ss_dssp ------------------TTCCEEECCSSCEECSGGGHHHHHHHHHSSC-CCSCCBEEESGGGTTCBTTTSCGGGCCC-
T ss_pred ------------------ccccEEEeCCCCeecCCcCHHHHHHHHhccC-CCCCcCcCCchHHCCCCcccCChHHeeeh
Confidence 3455677889999999999999999987532 23557899999999999999988877664
No 15
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.91 E-value=9e-24 Score=230.05 Aligned_cols=232 Identities=21% Similarity=0.357 Sum_probs=178.1
Q ss_pred EEEccCC-CCCCCCCCCCCCCCCCcEEECCC-CcCcccccCCcCCCCCccEEeccCCCccccchhhhcCCCCCCeeeccC
Q psy12044 103 DLDFSHN-VLQTVPSDTFPDYPSLMKLTLSG-NPIKQIKTGAFQPLSYLVTLELSKCGIEVIEDAAFVGLDSLEWLKLDN 180 (767)
Q Consensus 103 ~L~Ls~N-~Lt~l~p~~f~~l~~L~~L~Ls~-N~l~~l~~~~~~~l~~L~~L~Ls~N~L~~i~~~~~~~l~~L~~L~Ls~ 180 (767)
.++++++ .|+.++. |..+.+|+.|+|++ |.|+++++..|..+++|+.|+|++|+|+++++..|..+++|+.|+|++
T Consensus 12 ~v~~~~~n~l~~ip~--l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~ 89 (347)
T 2ifg_A 12 GLRCTRDGALDSLHH--LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSF 89 (347)
T ss_dssp CEECCSSCCCTTTTT--SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCS
T ss_pred EEEcCCCCCCCccCC--CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCC
Confidence 4566666 6776654 77777788888875 888888777788888888888888888888888888888888888888
Q ss_pred CccccccCCCCCCCCcccccCCCCCCCchhhhhhhhhhhccCCCCCc-cCCCCCCCCCCCCCcccccccccccCC-CCCC
Q psy12044 181 NKITTISGSNILPTGLHGIDLHHNPWTCDCLLIGLRRWLESTKTPMA-IDPICSVPPRLSSVTIKQLSIDELACE-PQIT 258 (767)
Q Consensus 181 N~Lt~ip~~~~~~~~L~~L~Ls~N~l~C~c~l~~l~~~l~~~~~~~~-~~~~C~~p~~l~g~~i~~l~~~~l~C~-P~i~ 258 (767)
|+|+.+++..+....|+.|+|.+|+|.|+|.+.|+..|+........ ....|..|..+.. +. ...|. |.+.
T Consensus 90 N~l~~~~~~~~~~~~L~~l~l~~N~~~c~c~l~~~~~~~~~~~~~l~~~~~~C~~~~~l~~-----l~--~~~c~~P~i~ 162 (347)
T 2ifg_A 90 NALESLSWKTVQGLSLQELVLSGNPLHCSCALRWLQRWEEEGLGGVPEQKLQCHGQGPLAH-----MP--NASCGVPTLK 162 (347)
T ss_dssp SCCSCCCSTTTCSCCCCEEECCSSCCCCCGGGHHHHHHHHTTCSSCGGGCCCCSSSSCSSC-----CC--CTTCCCCEEE
T ss_pred CccceeCHHHcccCCceEEEeeCCCccCCCccHHHHHHHHhCcccccccCCCCCCChHHhc-----CC--cccCCCCcee
Confidence 88888888777655699999999999999999999999987655433 6788988874432 22 25675 5555
Q ss_pred CCccceeecccccccccccccccCCCcEEEeecCeeccCCCcccccccceeecccCcceeeeEEEEeeeccCCCC-ceeE
Q psy12044 259 PSTFYLEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNG-TFVC 337 (767)
Q Consensus 259 ~~~~~~~v~~G~~vsL~C~a~g~P~p~itW~~~g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~G-tY~C 337 (767)
..+....+.+|+.+.|.|.+.+.|.+.+.|.+++..+..... .......+.|.|.++...|.| .|.|
T Consensus 163 ~~~~~~~v~~G~~v~L~C~~~g~p~p~i~W~~~~~~~~~~~~------------~~~~~~~~~L~i~~v~~~D~G~~Y~C 230 (347)
T 2ifg_A 163 VQVPNASVDVGDDVLLRCQVEGRGLEQAGWILTELEQSATVM------------KSGGLPSLGLTLANVTSDLNRKNVTC 230 (347)
T ss_dssp EECCSSCCBTTCCEEEEEEEECSSCCCCCEEESCCCSSEEEC------------CCCCSSEEEEEEESCCSTTTTCCEEE
T ss_pred ccCCceEEeCCCcEEEEEEEecCCCCEEEEEcCCceeecccc------------cceecccceEEEeeCChHHCCCeEEE
Confidence 555667889999999999999999999999997754321110 011234568999999999999 9999
Q ss_pred eeccCCCCcccceEEEEE
Q psy12044 338 VAENQAGSTSSNYTIRIV 355 (767)
Q Consensus 338 vA~N~~G~s~~s~sL~V~ 355 (767)
.+.|..|.....+.+.|.
T Consensus 231 ~a~n~~g~~~~~~~l~V~ 248 (347)
T 2ifg_A 231 WAENDVGRAEVSVQVNVS 248 (347)
T ss_dssp CCEETTEECCEEECCCCB
T ss_pred EEEcCCCCEEEEEEEEEc
Confidence 999998887665555443
No 16
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.90 E-value=1.8e-23 Score=220.26 Aligned_cols=213 Identities=27% Similarity=0.420 Sum_probs=153.6
Q ss_pred CCceecccCCeeEEEecCCCccccccCCCCCccEEEeeCCCCCCCCchhhhccCCCCccEEEccCCCCCccCcccccCCC
Q psy12044 20 TSCICKWKGGKQTVECVNKSLITVVEGMDPNTQVLDYTGNNLKTLHNEKFQKMGLVNLQKIYLSRCRISVIDSKAFRGLT 99 (767)
Q Consensus 20 ~~C~C~~~g~~~~v~C~~~~L~~iP~~l~~~L~~L~Ls~N~L~~l~~~~f~~~~L~~L~~L~Ls~N~L~~i~p~~f~~L~ 99 (767)
.+|.|.+.. ..++|.+.++..+|..+++++++|+|++|.|+++.+..|.. +++|+.|+|++|.|+.+.+..|.+++
T Consensus 1 ~~C~~~~~~--~~~~c~~~~l~~ip~~l~~~l~~L~ls~n~l~~~~~~~~~~--l~~L~~L~l~~n~l~~~~~~~~~~l~ 76 (276)
T 2z62_A 1 EPCVEVVPN--ITYQCMELNFYKIPDNLPFSTKNLDLSFNPLRHLGSYSFFS--FPELQVLDLSRCEIQTIEDGAYQSLS 76 (276)
T ss_dssp CCSEEEETT--TEEECTTSCCSSCCSSSCTTCCEEECTTCCCCEECTTTTTT--CTTCSEEECTTCCCCEECTTTTTTCT
T ss_pred CCceeccCC--ceEEecCCCccccCCCCCCCccEEECCCCcccccCHhHhcc--ccCCcEEECCCCcCCccCHHHccCCc
Confidence 368887643 67999999999999999999999999999999988877774 78888888888888888777788888
Q ss_pred CCCEEEccCCCCCCCCCCCCCCCCCCcEEECCCCcCcccccCCcCCCCCccEEeccCCCccccc-hhhhcCCCCCC----
Q psy12044 100 NLVDLDFSHNVLQTVPSDTFPDYPSLMKLTLSGNPIKQIKTGAFQPLSYLVTLELSKCGIEVIE-DAAFVGLDSLE---- 174 (767)
Q Consensus 100 ~L~~L~Ls~N~Lt~l~p~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~L~~i~-~~~~~~l~~L~---- 174 (767)
+|++|+|++|.|+++.+..|..+++|+.|+|++|.++++.+..+..+++|+.|+|++|.++++. +..|..+++|+
T Consensus 77 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~L 156 (276)
T 2z62_A 77 HLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDL 156 (276)
T ss_dssp TCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEEC
T ss_pred CCCEEECCCCccCccChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEEC
Confidence 8888888888887777666666666666666666666655545555555555555555554432 33344444444
Q ss_pred -----------------------------------------------eeeccCCccccccCCCC-CCCCcccccCCCCCC
Q psy12044 175 -----------------------------------------------WLKLDNNKITTISGSNI-LPTGLHGIDLHHNPW 206 (767)
Q Consensus 175 -----------------------------------------------~L~Ls~N~Lt~ip~~~~-~~~~L~~L~Ls~N~l 206 (767)
.|+|++|+|+.++...+ ..++|+.|+|++|+|
T Consensus 157 s~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~ 236 (276)
T 2z62_A 157 SSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPW 236 (276)
T ss_dssp CSSCCCEECGGGGHHHHTCTTCCEEEECCSSCCCEECTTSSCSCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCB
T ss_pred CCCCCCcCCHHHhhhhhhccccceeeecCCCcccccCccccCCCcccEEECCCCceeecCHhHhcccccccEEEccCCcc
Confidence 44444455554544432 357888999999999
Q ss_pred Cchhh-hhhhhhhhccCCCCCccCCCCCCCC
Q psy12044 207 TCDCL-LIGLRRWLESTKTPMAIDPICSVPP 236 (767)
Q Consensus 207 ~C~c~-l~~l~~~l~~~~~~~~~~~~C~~p~ 236 (767)
.|+|. +.|+..|+............|..+.
T Consensus 237 ~c~c~~l~~l~~~~~~~~~~~~~~~~C~~~~ 267 (276)
T 2z62_A 237 DCSCPRIDYLSRWLNKNSQKEQGSAKCSGSG 267 (276)
T ss_dssp CCCTTTTHHHHHHHHHTGGGBCSCCBBTTTC
T ss_pred cccCCchHHHHHHHHhcccccCCCceeeCCC
Confidence 99996 7888999887655555566787754
No 17
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.90 E-value=2.4e-23 Score=210.01 Aligned_cols=161 Identities=31% Similarity=0.558 Sum_probs=129.6
Q ss_pred CCCCceecccCCeeEEEecCCCccccccCCCCCccEEEeeCCCCCCCCchhhhccCCCCccEEEccCCCCCccCcccccC
Q psy12044 18 CPTSCICKWKGGKQTVECVNKSLITVVEGMDPNTQVLDYTGNNLKTLHNEKFQKMGLVNLQKIYLSRCRISVIDSKAFRG 97 (767)
Q Consensus 18 CP~~C~C~~~g~~~~v~C~~~~L~~iP~~l~~~L~~L~Ls~N~L~~l~~~~f~~~~L~~L~~L~Ls~N~L~~i~p~~f~~ 97 (767)
||..|.|.|.+ ++|.+.++..+|..+++++++|+|++|.|+++++..|.. +++|+.|+|++|+|+.+.+..|..
T Consensus 1 Cp~~C~C~~~~----v~c~~~~l~~~p~~~~~~l~~L~l~~n~l~~~~~~~~~~--l~~L~~L~l~~n~l~~~~~~~~~~ 74 (208)
T 2o6s_A 1 CPSRCSCSGTT----VECYSQGRTSVPTGIPAQTTYLDLETNSLKSLPNGVFDE--LTSLTQLYLGGNKLQSLPNGVFNK 74 (208)
T ss_dssp CCTTCEEETTE----EECCSSCCSSCCSCCCTTCSEEECCSSCCCCCCTTTTTT--CTTCSEEECCSSCCCCCCTTTTTT
T ss_pred CcCCCEECCCE----EEecCCCccCCCCCCCCCCcEEEcCCCccCcCChhhhcc--cccCcEEECCCCccCccChhhcCC
Confidence 99999999854 999999999999999999999999999999888877764 788888888888888887777888
Q ss_pred CCCCCEEEccCCCCCCCCCCCCCCCCCCcEEECCCCcCcccccCCcCCCCCccEEeccCCCccccchhhhcCCCCCCeee
Q psy12044 98 LTNLVDLDFSHNVLQTVPSDTFPDYPSLMKLTLSGNPIKQIKTGAFQPLSYLVTLELSKCGIEVIEDAAFVGLDSLEWLK 177 (767)
Q Consensus 98 L~~L~~L~Ls~N~Lt~l~p~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~L~~i~~~~~~~l~~L~~L~ 177 (767)
+++|++|+|++|.|+++++..|..+++|+.|+|++|.|+++++..|..+++|+.|+|++|.|+++++..|..+++|+.|+
T Consensus 75 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~ 154 (208)
T 2o6s_A 75 LTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIW 154 (208)
T ss_dssp CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEE
T ss_pred CCCcCEEECCCCcCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEE
Confidence 88888888888888888777777788888888888888777776677777777777777777776666566666666666
Q ss_pred ccCCccc
Q psy12044 178 LDNNKIT 184 (767)
Q Consensus 178 Ls~N~Lt 184 (767)
|++|.+.
T Consensus 155 l~~N~~~ 161 (208)
T 2o6s_A 155 LHDNPWD 161 (208)
T ss_dssp CCSCCBC
T ss_pred ecCCCee
Confidence 6665443
No 18
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.89 E-value=3.1e-22 Score=205.58 Aligned_cols=175 Identities=30% Similarity=0.565 Sum_probs=122.2
Q ss_pred CCCCCceecccCCeeEEEecCCCccccccCCCCCccEEEeeCCCCCCCCchhhhccCCCCccEEEccCCCCCccCccccc
Q psy12044 17 ACPTSCICKWKGGKQTVECVNKSLITVVEGMDPNTQVLDYTGNNLKTLHNEKFQKMGLVNLQKIYLSRCRISVIDSKAFR 96 (767)
Q Consensus 17 ~CP~~C~C~~~g~~~~v~C~~~~L~~iP~~l~~~L~~L~Ls~N~L~~l~~~~f~~~~L~~L~~L~Ls~N~L~~i~p~~f~ 96 (767)
.....|.|.|.+ |+|++..+..+|..++++|++|+|++|.|+++.+..|.. +++|+.|+|++|.|+.+.+..|.
T Consensus 12 ~~~~~~~Cs~~~----v~c~~~~l~~ip~~~~~~L~~L~Ls~n~i~~~~~~~~~~--l~~L~~L~L~~N~l~~i~~~~~~ 85 (229)
T 3e6j_A 12 ACPSQCSCSGTT----VDCRSKRHASVPAGIPTNAQILYLHDNQITKLEPGVFDS--LINLKELYLGSNQLGALPVGVFD 85 (229)
T ss_dssp CCCTTCEEETTE----EECTTSCCSSCCSCCCTTCSEEECCSSCCCCCCTTTTTT--CTTCCEEECCSSCCCCCCTTTTT
T ss_pred cCCCCCEEeCCE----eEccCCCcCccCCCCCCCCCEEEcCCCccCccCHHHhhC--ccCCcEEECCCCCCCCcChhhcc
Confidence 455689999854 999999999999988888888888888887777666653 66666666666666666555566
Q ss_pred CCCCCCEEEccCCCCCCCCCCCCCCCCCCcEEECCCCcCcccccCCcCCCCCccEEeccCCCccccchhhhcCCCCCCee
Q psy12044 97 GLTNLVDLDFSHNVLQTVPSDTFPDYPSLMKLTLSGNPIKQIKTGAFQPLSYLVTLELSKCGIEVIEDAAFVGLDSLEWL 176 (767)
Q Consensus 97 ~L~~L~~L~Ls~N~Lt~l~p~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~L~~i~~~~~~~l~~L~~L 176 (767)
++++|+.|+|++|.|+++++..|..+++|+.|+|++|.|+.++ ..+..+++|+.|
T Consensus 86 ~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~lp-------------------------~~~~~l~~L~~L 140 (229)
T 3e6j_A 86 SLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLTELP-------------------------RGIERLTHLTHL 140 (229)
T ss_dssp TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCSCC-------------------------TTGGGCTTCSEE
T ss_pred cCCCcCEEECCCCcCCccChhHhCcchhhCeEeccCCcccccC-------------------------cccccCCCCCEE
Confidence 6666666666666666665555555555555555555555332 234455666666
Q ss_pred eccCCccccccCCC-CCCCCcccccCCCCCCCchhh-hhhhhhhhccC
Q psy12044 177 KLDNNKITTISGSN-ILPTGLHGIDLHHNPWTCDCL-LIGLRRWLEST 222 (767)
Q Consensus 177 ~Ls~N~Lt~ip~~~-~~~~~L~~L~Ls~N~l~C~c~-l~~l~~~l~~~ 222 (767)
+|++|+|+.++... ..+++|+.|+|++|+|.|+|. +.++..|+...
T Consensus 141 ~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~~~~l~~~~~~~ 188 (229)
T 3e6j_A 141 ALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCECRDIMYLRNWVADH 188 (229)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTTBGGGHHHHHHHHHC
T ss_pred ECCCCcCCccCHHHHhCCCCCCEEEeeCCCccCCcchhHHHHHHHHhC
Confidence 66666666665442 245678888999999999996 88888888764
No 19
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.88 E-value=5.8e-23 Score=223.60 Aligned_cols=313 Identities=16% Similarity=0.215 Sum_probs=186.5
Q ss_pred CCCCc-eecccCCeeEEEecCC-CccccccCCC--CCccEEEeeC-CCCCCCCchhhhccCCCCccEEEccCCCCCccCc
Q psy12044 18 CPTSC-ICKWKGGKQTVECVNK-SLITVVEGMD--PNTQVLDYTG-NNLKTLHNEKFQKMGLVNLQKIYLSRCRISVIDS 92 (767)
Q Consensus 18 CP~~C-~C~~~g~~~~v~C~~~-~L~~iP~~l~--~~L~~L~Ls~-N~L~~l~~~~f~~~~L~~L~~L~Ls~N~L~~i~p 92 (767)
||..| .|.|. .|+|++. +|..||. +. .+|+.|+|++ |.|+++++..|.. |++|+.|+|++|+|+++.+
T Consensus 1 cp~~c~~C~~~----~v~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~--l~~L~~L~l~~N~l~~~~~ 73 (347)
T 2ifg_A 1 CPDACCPHGSS----GLRCTRDGALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRG--LGELRNLTIVKSGLRFVAP 73 (347)
T ss_dssp CCSSSCCSSSS----CEECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCS--CCCCSEEECCSSCCCEECT
T ss_pred CCCcCccccCC----EEEcCCCCCCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhcc--ccCCCEEECCCCccceeCH
Confidence 99999 99874 4899998 8999998 74 4699999996 9999999888874 8899999999999999988
Q ss_pred ccccCCCCCCEEEccCCCCCCCCCCCCCCCCCCcEEECCCCcCccccc-CCcCCCCCccEEeccCCCccccchhhhcCCC
Q psy12044 93 KAFRGLTNLVDLDFSHNVLQTVPSDTFPDYPSLMKLTLSGNPIKQIKT-GAFQPLSYLVTLELSKCGIEVIEDAAFVGLD 171 (767)
Q Consensus 93 ~~f~~L~~L~~L~Ls~N~Lt~l~p~~f~~l~~L~~L~Ls~N~l~~l~~-~~~~~l~~L~~L~Ls~N~L~~i~~~~~~~l~ 171 (767)
.+|.+|++|+.|+|++|+|+++++..|..+. |+.|+|.+|.+..... ..|..+.......+..+.++...+.
T Consensus 74 ~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~-L~~l~l~~N~~~c~c~l~~~~~~~~~~~~~l~~~~~~C~~~~------ 146 (347)
T 2ifg_A 74 DAFHFTPRLSRLNLSFNALESLSWKTVQGLS-LQELVLSGNPLHCSCALRWLQRWEEEGLGGVPEQKLQCHGQG------ 146 (347)
T ss_dssp TGGGSCSCCCEEECCSSCCSCCCSTTTCSCC-CCEEECCSSCCCCCGGGHHHHHHHHTTCSSCGGGCCCCSSSS------
T ss_pred HHhcCCcCCCEEeCCCCccceeCHHHcccCC-ceEEEeeCCCccCCCccHHHHHHHHhCcccccccCCCCCCCh------
Confidence 8899999999999999999998888887766 9999999998875432 1111111111122233333333332
Q ss_pred CCCeeeccCCccccccCCCCCCCCcccccCCCCC--CCchhhh--hhhhhhhccCCCCCccCCCC--CCCCCCCCCcccc
Q psy12044 172 SLEWLKLDNNKITTISGSNILPTGLHGIDLHHNP--WTCDCLL--IGLRRWLESTKTPMAIDPIC--SVPPRLSSVTIKQ 245 (767)
Q Consensus 172 ~L~~L~Ls~N~Lt~ip~~~~~~~~L~~L~Ls~N~--l~C~c~l--~~l~~~l~~~~~~~~~~~~C--~~p~~l~g~~i~~ 245 (767)
.|+.+.+..+..-.+. ..+..+.. ..|.. |.|...- ...+.|.............- .....+.-..+..
T Consensus 147 ~l~~l~~~~c~~P~i~---~~~~~~~v--~~G~~v~L~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~L~i~~v~~ 221 (347)
T 2ifg_A 147 PLAHMPNASCGVPTLK---VQVPNASV--DVGDDVLLRCQVEGRGLEQAGWILTELEQSATVMKSGGLPSLGLTLANVTS 221 (347)
T ss_dssp CSSCCCCTTCCCCEEE---EECCSSCC--BTTCCEEEEEEEECSSCCCCCEEESCCCSSEEECCCCCSSEEEEEEESCCS
T ss_pred HHhcCCcccCCCCcee---ccCCceEE--eCCCcEEEEEEEecCCCCEEEEEcCCceeecccccceecccceEEEeeCCh
Confidence 2222222221110000 00011111 11222 2232110 11234554432211100000 0000011111122
Q ss_pred cccc-cccCCCCC-------------CCCc--cceeecccccccccccccccCCCcEEEeecCeeccCCCccccccccee
Q psy12044 246 LSID-ELACEPQI-------------TPST--FYLEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVY 309 (767)
Q Consensus 246 l~~~-~l~C~P~i-------------~~~~--~~~~v~~G~~vsL~C~a~g~P~p~itW~~~g~~l~~~s~~~~~~~~~~ 309 (767)
-+.. .+.|...- ...+ .......|..+.|.|.+.+.|.|.+.|.+++..+....... ..
T Consensus 222 ~D~G~~Y~C~a~n~~g~~~~~~~l~V~~~P~i~~~~~~~g~~v~l~C~~~g~P~p~i~W~~~g~~l~~~~~~~-----~~ 296 (347)
T 2ifg_A 222 DLNRKNVTCWAENDVGRAEVSVQVNVSFPASVQLHTAVEMHHWCIPFSVDGQPAPSLRWLFNGSVLNETSFIF-----TE 296 (347)
T ss_dssp TTTTCCEEECCEETTEECCEEECCCCBEEEEEEECCCEESSSEEEEEEEEEESCCEEEEEETTEECCCCSSEE-----EE
T ss_pred HHCCCeEEEEEEcCCCCEEEEEEEEEcCCCeeeeccCccCceEEEEEEeeecCCCcEEEEeCCEECCCCccee-----eE
Confidence 2223 34453110 0001 12234568899999999999999999999988776432210 11
Q ss_pred ecc--cCcceeeeEEEEeeeccCCCCceeEeeccCCCCcccceEEEE
Q psy12044 310 STE--EGTEIKKSELLIYNSNIDDNGTFVCVAENQAGSTSSNYTIRI 354 (767)
Q Consensus 310 ~~~--~g~~~~~s~L~I~nvs~sD~GtY~CvA~N~~G~s~~s~sL~V 354 (767)
... .+.....+.|.|.++...|.|.|+|.|.|..|...+.+.+.|
T Consensus 297 ~~~~~~~~~~~~~~L~I~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V 343 (347)
T 2ifg_A 297 FLEPAANETVRHGCLRLNQPTHVNNGNYTLLAANPFGQASASIMAAF 343 (347)
T ss_dssp ECCCCTTCCCEEEEEEESSCCGGGCEEEEEEEEETTEEEEEEEEECS
T ss_pred EEeecCCCcccceEEEECCCCcccCceEEEEEecCCCceeeEEEEEe
Confidence 111 122345678999999999999999999999998776665544
No 20
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.87 E-value=2.1e-22 Score=207.63 Aligned_cols=183 Identities=24% Similarity=0.380 Sum_probs=167.8
Q ss_pred cCCCCCceecc-cCCeeEEEecCCCccccccCCCCCccEEEeeCCCCCCCCchhhhccCCCCccEEEccCCC-CCccCcc
Q psy12044 16 SACPTSCICKW-KGGKQTVECVNKSLITVVEGMDPNTQVLDYTGNNLKTLHNEKFQKMGLVNLQKIYLSRCR-ISVIDSK 93 (767)
Q Consensus 16 ~~CP~~C~C~~-~g~~~~v~C~~~~L~~iP~~l~~~L~~L~Ls~N~L~~l~~~~f~~~~L~~L~~L~Ls~N~-L~~i~p~ 93 (767)
..||..|.|.+ .. ..|+|.+ +..+|. ++.+++.|+|++|+|+++++..|.. +++|+.|+|++|. ++.+.+.
T Consensus 2 ~~cp~~C~C~~~~~--~~v~c~~--l~~ip~-~~~~l~~L~l~~n~l~~i~~~~~~~--l~~L~~L~l~~n~~l~~i~~~ 74 (239)
T 2xwt_C 2 GCSSPPCECHQEED--FRVTCKD--IQRIPS-LPPSTQTLKLIETHLRTIPSHAFSN--LPNISRIYVSIDVTLQQLESH 74 (239)
T ss_dssp -CCSSSCSEEECST--TEEEECS--CSSCCC-CCTTCCEEEEESCCCSEECTTTTTT--CTTCCEEEEECCSSCCEECTT
T ss_pred CCCCCCCeeCCCCc--ceeEccC--ccccCC-CCCcccEEEEeCCcceEECHHHccC--CCCCcEEeCCCCCCcceeCHh
Confidence 57999999975 43 6788976 889999 9999999999999999999988874 8999999999997 9999888
Q ss_pred cccCCCCCCEEEccC-CCCCCCCCCCCCCCCCCcEEECCCCcCcccccCCcCCCCCcc---EEeccCC-Cccccchhhhc
Q psy12044 94 AFRGLTNLVDLDFSH-NVLQTVPSDTFPDYPSLMKLTLSGNPIKQIKTGAFQPLSYLV---TLELSKC-GIEVIEDAAFV 168 (767)
Q Consensus 94 ~f~~L~~L~~L~Ls~-N~Lt~l~p~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~---~L~Ls~N-~L~~i~~~~~~ 168 (767)
+|.++++|++|+|++ |.|+.+++..|..+++|+.|+|++|.+++++. |..+.+|+ .|+|++| .++.+++..|.
T Consensus 75 ~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~l~~n~l~~lp~--~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~ 152 (239)
T 2xwt_C 75 SFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKMFPD--LTKVYSTDIFFILEITDNPYMTSIPVNAFQ 152 (239)
T ss_dssp TEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEEEEEECCCSCCC--CTTCCBCCSEEEEEEESCTTCCEECTTTTT
T ss_pred HcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEeCCCCCCccccc--cccccccccccEEECCCCcchhhcCccccc
Confidence 999999999999999 99999999999999999999999999999765 88888888 9999999 99999998999
Q ss_pred CCCCCC-eeeccCCccccccCCCCCCCCcccccCCCCC-CC
Q psy12044 169 GLDSLE-WLKLDNNKITTISGSNILPTGLHGIDLHHNP-WT 207 (767)
Q Consensus 169 ~l~~L~-~L~Ls~N~Lt~ip~~~~~~~~L~~L~Ls~N~-l~ 207 (767)
.+++|+ .|+|++|+|+.++...+...+|+.|+|++|+ +.
T Consensus 153 ~l~~L~~~L~l~~n~l~~i~~~~~~~~~L~~L~L~~n~~l~ 193 (239)
T 2xwt_C 153 GLCNETLTLKLYNNGFTSVQGYAFNGTKLDAVYLNKNKYLT 193 (239)
T ss_dssp TTBSSEEEEECCSCCCCEECTTTTTTCEEEEEECTTCTTCC
T ss_pred chhcceeEEEcCCCCCcccCHhhcCCCCCCEEEcCCCCCcc
Confidence 999999 9999999999999888777899999999995 75
No 21
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.87 E-value=3.8e-22 Score=233.11 Aligned_cols=217 Identities=22% Similarity=0.298 Sum_probs=178.0
Q ss_pred eEEEecCCCccccccCC--CCCccEEEeeCCCCCCCCc-hhhhccCCCCccEEEccCCCCCccCcccccCCCCCCEEEcc
Q psy12044 31 QTVECVNKSLITVVEGM--DPNTQVLDYTGNNLKTLHN-EKFQKMGLVNLQKIYLSRCRISVIDSKAFRGLTNLVDLDFS 107 (767)
Q Consensus 31 ~~v~C~~~~L~~iP~~l--~~~L~~L~Ls~N~L~~l~~-~~f~~~~L~~L~~L~Ls~N~L~~i~p~~f~~L~~L~~L~Ls 107 (767)
+.++.++..+..+|..+ .++|+.|+|++|.+.++.+ ..|.. +++|+.|+|++|.+.+..+..|.++++|++|+|+
T Consensus 379 ~~L~L~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~--l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 456 (606)
T 3vq2_A 379 RHLDLSFNGAIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLS--LEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMA 456 (606)
T ss_dssp CEEECCSCSEEEECCCCTTCTTCCEEECTTSEEESTTTTTTTTT--CTTCCEEECTTSCCEECCTTTTTTCTTCCEEECT
T ss_pred cEeECCCCccccchhhccCCCCCCeeECCCCccCCccChhhhhc--cccCCEEECcCCCCCccchhhhcCCCCCCEEECC
Confidence 45666677777777555 5789999999999988877 56663 8999999999999999999999999999999999
Q ss_pred CCCCCC-CCCCCCCCCCCCcEEECCCCcCcccccCCcCCCCCccEEeccCCCccccchhhhcCCCCCCeeeccCCccccc
Q psy12044 108 HNVLQT-VPSDTFPDYPSLMKLTLSGNPIKQIKTGAFQPLSYLVTLELSKCGIEVIEDAAFVGLDSLEWLKLDNNKITTI 186 (767)
Q Consensus 108 ~N~Lt~-l~p~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~L~~i~~~~~~~l~~L~~L~Ls~N~Lt~i 186 (767)
+|.+++ ..|..|..+++|+.|+|++|.++++.+..|..+++|+.|+|++|.++++.+..|..+++|+.|+|++|+|+.+
T Consensus 457 ~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~ 536 (606)
T 3vq2_A 457 GNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETS 536 (606)
T ss_dssp TCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCCCE
T ss_pred CCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCccc
Confidence 999998 5778899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCC-CcccccCCCCCCCchhhhhhhhhhhccCCCCC--ccCCCCCCCCCCCCCcccccccc
Q psy12044 187 SGSNILPT-GLHGIDLHHNPWTCDCLLIGLRRWLESTKTPM--AIDPICSVPPRLSSVTIKQLSID 249 (767)
Q Consensus 187 p~~~~~~~-~L~~L~Ls~N~l~C~c~l~~l~~~l~~~~~~~--~~~~~C~~p~~l~g~~i~~l~~~ 249 (767)
|..+...+ +|+.|++++|+|.|+|.+.|+..|+....... .....|..|..+.|..+.+++..
T Consensus 537 p~~~~~l~~~L~~l~l~~N~~~c~c~~~~~~~~l~~~~~~~~~~~~~~C~~p~~~~~~~l~~~~~~ 602 (606)
T 3vq2_A 537 KGILQHFPKSLAFFNLTNNSVACICEHQKFLQWVKEQKQFLVNVEQMTCATPVEMNTSLVLDFNNS 602 (606)
T ss_dssp ESCGGGSCTTCCEEECCSCCCCCSSTTHHHHTTTTTSSSSBSSGGGCCCC----------------
T ss_pred CHhHhhhcccCcEEEccCCCcccCCccHHHHHHHHcCcccccCCccceeCCChHhCCCEeeecccc
Confidence 98866554 69999999999999999999999997754332 36788999999999988887655
No 22
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.87 E-value=1.2e-21 Score=228.74 Aligned_cols=217 Identities=23% Similarity=0.372 Sum_probs=181.7
Q ss_pred EEecCCCccccccCC--CCCccEEEeeCCCCCCCCc-hhhhccCCCCccEEEccCCCCCccCcccccCCCCCCEEEccCC
Q psy12044 33 VECVNKSLITVVEGM--DPNTQVLDYTGNNLKTLHN-EKFQKMGLVNLQKIYLSRCRISVIDSKAFRGLTNLVDLDFSHN 109 (767)
Q Consensus 33 v~C~~~~L~~iP~~l--~~~L~~L~Ls~N~L~~l~~-~~f~~~~L~~L~~L~Ls~N~L~~i~p~~f~~L~~L~~L~Ls~N 109 (767)
+++.......++..+ .++++.++++.+.+....+ ..|. .+.+|+.++++.|.+....+..+..+++|+.|+|++|
T Consensus 402 L~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~--~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N 479 (635)
T 4g8a_A 402 LDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFL--SLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGN 479 (635)
T ss_dssp EECCSCSEEEECSCCTTCTTCCEEECTTSEEESTTSSCTTT--TCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTC
T ss_pred hhccccccccccccccccccccchhhhhccccccccccccc--cccccccccccccccccccccccccchhhhhhhhhhc
Confidence 333333333333333 4678888888777665443 4454 4889999999999999999999999999999999999
Q ss_pred C-CCCCCCCCCCCCCCCcEEECCCCcCcccccCCcCCCCCccEEeccCCCccccchhhhcCCCCCCeeeccCCccccccC
Q psy12044 110 V-LQTVPSDTFPDYPSLMKLTLSGNPIKQIKTGAFQPLSYLVTLELSKCGIEVIEDAAFVGLDSLEWLKLDNNKITTISG 188 (767)
Q Consensus 110 ~-Lt~l~p~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~L~~i~~~~~~~l~~L~~L~Ls~N~Lt~ip~ 188 (767)
. +..+.|..|..+++|+.|+|++|+|+++++..|.++++|+.|+|++|+|+++++..|..+++|+.|+|++|+|+.+++
T Consensus 480 ~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~ 559 (635)
T 4g8a_A 480 SFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKK 559 (635)
T ss_dssp EEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCS
T ss_pred ccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCH
Confidence 8 556778899999999999999999999999999999999999999999999999999999999999999999999877
Q ss_pred CCCC-C-CCcccccCCCCCCCchhhhhhhhhhhccCCCCC--ccCCCCCCCCCCCCCcccccccccccCC
Q psy12044 189 SNIL-P-TGLHGIDLHHNPWTCDCLLIGLRRWLESTKTPM--AIDPICSVPPRLSSVTIKQLSIDELACE 254 (767)
Q Consensus 189 ~~~~-~-~~L~~L~Ls~N~l~C~c~l~~l~~~l~~~~~~~--~~~~~C~~p~~l~g~~i~~l~~~~l~C~ 254 (767)
..+. . .+|+.|+|++|+|.|||.+.|+..|++...... .....|..|..++|..+.+++ ++|.
T Consensus 560 ~~l~~l~~~L~~L~L~~Np~~C~C~~~~~~~wl~~~~~~~~~~~~~~C~~P~~~~g~~l~~~~---~~C~ 626 (635)
T 4g8a_A 560 QELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLVEVERMECATPSDKQGMPVLSLN---ITCQ 626 (635)
T ss_dssp SCTTCCCTTCCEEECTTCCBCCSGGGHHHHHHHHHTTTTBSCGGGCBBCSSTTTTTCBGGGCC---CCC-
T ss_pred HHHHhhhCcCCEEEeeCCCCcccCCcHHHHHHHHhCCCccCCCCCceeCCchHHCCCEeeeec---cCCC
Confidence 6553 3 689999999999999999999999998765432 356889999999999988874 4564
No 23
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.85 E-value=2.6e-21 Score=225.98 Aligned_cols=188 Identities=25% Similarity=0.341 Sum_probs=164.3
Q ss_pred cCCCCCceecccCCeeEEEecCCCccccccCCCCCccEEEeeCCCCCCCCchhhhccCCCCccEEEccCCCCCccCcccc
Q psy12044 16 SACPTSCICKWKGGKQTVECVNKSLITVVEGMDPNTQVLDYTGNNLKTLHNEKFQKMGLVNLQKIYLSRCRISVIDSKAF 95 (767)
Q Consensus 16 ~~CP~~C~C~~~g~~~~v~C~~~~L~~iP~~l~~~L~~L~Ls~N~L~~l~~~~f~~~~L~~L~~L~Ls~N~L~~i~p~~f 95 (767)
..|..+|.|... ..+++|++++|+.||.++++++++|+|++|.|+++++..|.+ +++|++|+|++|+|+++.+.+|
T Consensus 21 p~~~~~c~~~~~--~~~~~c~~~~l~~vP~~lp~~~~~LdLs~N~i~~l~~~~f~~--l~~L~~L~Ls~N~i~~i~~~~f 96 (635)
T 4g8a_A 21 PESWEPCVEVVP--NITYQCMELNFYKIPDNLPFSTKNLDLSFNPLRHLGSYSFFS--FPELQVLDLSRCEIQTIEDGAY 96 (635)
T ss_dssp ----CCSEEEET--TTEEECTTSCCSSCCSSSCTTCCEEECTTSCCCEECTTTTTT--CTTCCEEECTTCCCCEECTTTT
T ss_pred CCCCCCccccCC--CCEEECCCCCcCccCCCCCcCCCEEEeeCCCCCCCCHHHHhC--CCCCCEEECCCCcCCCcChhHh
Confidence 345557888653 368999999999999999999999999999999999999985 9999999999999999999999
Q ss_pred cCCCCCCEEEccCCCCCCCCCCCCCCCCCCcEEECCCCcCcccccCCcCCCCCccEEeccCCCcccc-chhhhcCCCCCC
Q psy12044 96 RGLTNLVDLDFSHNVLQTVPSDTFPDYPSLMKLTLSGNPIKQIKTGAFQPLSYLVTLELSKCGIEVI-EDAAFVGLDSLE 174 (767)
Q Consensus 96 ~~L~~L~~L~Ls~N~Lt~l~p~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~L~~i-~~~~~~~l~~L~ 174 (767)
.++++|++|+|++|+|+++++..|.++++|++|+|++|.|+++++..|+++++|+.|+|++|.|+.+ .+..+..+++|+
T Consensus 97 ~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~ 176 (635)
T 4g8a_A 97 QSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLE 176 (635)
T ss_dssp TTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCC
T ss_pred cCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhh
Confidence 9999999999999999999999999999999999999999999999999999999999999999876 467788999999
Q ss_pred eeeccCCccccccCCCCC-C----CCcccccCCCCCCC
Q psy12044 175 WLKLDNNKITTISGSNIL-P----TGLHGIDLHHNPWT 207 (767)
Q Consensus 175 ~L~Ls~N~Lt~ip~~~~~-~----~~L~~L~Ls~N~l~ 207 (767)
.|+|++|+|+.+++..+. + ..+..++++.|.+.
T Consensus 177 ~L~L~~N~l~~~~~~~l~~L~~l~~~~~~~~ls~n~l~ 214 (635)
T 4g8a_A 177 HLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMN 214 (635)
T ss_dssp EEECCSSCCCEECGGGGHHHHTCTTCCCEEECTTCCCC
T ss_pred hhcccCccccccccccccchhhhhhhhhhhhcccCccc
Confidence 999999999987654321 1 22345677778775
No 24
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.85 E-value=2.2e-21 Score=229.90 Aligned_cols=182 Identities=24% Similarity=0.382 Sum_probs=114.8
Q ss_pred CCCccEEEccCCCCCccCcccccCCCCCCEEEccCCCCCCCCC--------CCCCCCCCCcEEECCCCcCcccccCCcCC
Q psy12044 74 LVNLQKIYLSRCRISVIDSKAFRGLTNLVDLDFSHNVLQTVPS--------DTFPDYPSLMKLTLSGNPIKQIKTGAFQP 145 (767)
Q Consensus 74 L~~L~~L~Ls~N~L~~i~p~~f~~L~~L~~L~Ls~N~Lt~l~p--------~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~ 145 (767)
+++|+.|+|++|+|+++.+..|.++++|++|+|++|.++++.. ..|..+++|+.|+|++|.++.+++..|.+
T Consensus 479 l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~ 558 (680)
T 1ziw_A 479 LRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKD 558 (680)
T ss_dssp CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTT
T ss_pred CCCCCEEECCCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCHHHccc
Confidence 6677777777777777766677777777777777777765422 23666777777777777777777777778
Q ss_pred CCCccEEeccCCCccccchhhhcCCCCCCeeeccCCccccccCCCC--CCCCcccccCCCCCCCchhhh-hhhhhhhccC
Q psy12044 146 LSYLVTLELSKCGIEVIEDAAFVGLDSLEWLKLDNNKITTISGSNI--LPTGLHGIDLHHNPWTCDCLL-IGLRRWLEST 222 (767)
Q Consensus 146 l~~L~~L~Ls~N~L~~i~~~~~~~l~~L~~L~Ls~N~Lt~ip~~~~--~~~~L~~L~Ls~N~l~C~c~l-~~l~~~l~~~ 222 (767)
+++|+.|+|++|.|+.+++..|..+++|+.|+|++|+|+.+++..+ .+++|+.|+|++|+|.|+|.+ .|+..|+...
T Consensus 559 l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~l~l~~N~~~c~c~~~~~~~~~~~~~ 638 (680)
T 1ziw_A 559 LFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCESIAWFVNWINET 638 (680)
T ss_dssp CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCCHHHHHHHHTTCSEEECTTCCCCBCCCCCSSEECCSSCC
T ss_pred ccCcceeECCCCCCCcCCHhHhCCCCCCCEEECCCCcCCccChhHhcccccccCEEEccCCCcccCCccHHHHHHHHHhc
Confidence 8888888888888888877777778888888888888887776543 357899999999999999996 9999998765
Q ss_pred CCCC---ccCCCCCCCCCCCCCcccccccccccCCC
Q psy12044 223 KTPM---AIDPICSVPPRLSSVTIKQLSIDELACEP 255 (767)
Q Consensus 223 ~~~~---~~~~~C~~p~~l~g~~i~~l~~~~l~C~P 255 (767)
.... .....|..|..++|..+.+++...+.|.+
T Consensus 639 ~~~~~~~~~~~~C~~p~~~~g~~l~~~~~~~~~~~~ 674 (680)
T 1ziw_A 639 HTNIPELSSHYLCNTPPHYHGFPVRLFDTSSCKDSA 674 (680)
T ss_dssp ------------------------------------
T ss_pred CcccccccCCcEECCchHHCCCcccccChhhcCCCc
Confidence 4332 24678999999999999999988777654
No 25
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.84 E-value=5.5e-20 Score=193.57 Aligned_cols=188 Identities=28% Similarity=0.467 Sum_probs=167.2
Q ss_pred eeEEEecCCCcccccc-CCCCCccEEEeeCCCCCCCCchhhhccCCCCccEEEccCCCCCccCcccccCCCCCCEEEccC
Q psy12044 30 KQTVECVNKSLITVVE-GMDPNTQVLDYTGNNLKTLHNEKFQKMGLVNLQKIYLSRCRISVIDSKAFRGLTNLVDLDFSH 108 (767)
Q Consensus 30 ~~~v~C~~~~L~~iP~-~l~~~L~~L~Ls~N~L~~l~~~~f~~~~L~~L~~L~Ls~N~L~~i~p~~f~~L~~L~~L~Ls~ 108 (767)
-+.+.+.+..+..++. .-.++|++|+|++|.|+++. .+. .+++|+.|+|++|.|+++.+..|.++++|++|+|++
T Consensus 43 L~~L~l~~~~i~~~~~l~~l~~L~~L~l~~n~l~~~~--~l~--~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 118 (272)
T 3rfs_A 43 IDQIIANNSDIKSVQGIQYLPNVRYLALGGNKLHDIS--ALK--ELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVE 118 (272)
T ss_dssp CCEEECTTSCCCCCTTGGGCTTCCEEECTTSCCCCCG--GGT--TCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTT
T ss_pred eeeeeeCCCCcccccccccCCCCcEEECCCCCCCCch--hhc--CCCCCCEEECCCCccCccChhHhcCCcCCCEEECCC
Confidence 3567888877777663 22689999999999999874 455 389999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCCCCCCCcEEECCCCcCcccccCCcCCCCCccEEeccCCCccccchhhhcCCCCCCeeeccCCccccccC
Q psy12044 109 NVLQTVPSDTFPDYPSLMKLTLSGNPIKQIKTGAFQPLSYLVTLELSKCGIEVIEDAAFVGLDSLEWLKLDNNKITTISG 188 (767)
Q Consensus 109 N~Lt~l~p~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~L~~i~~~~~~~l~~L~~L~Ls~N~Lt~ip~ 188 (767)
|.|+++++..|..+++|+.|+|++|.++++++..|..+++|+.|+|++|.|+++++..|..+++|+.|+|++|+|+.+++
T Consensus 119 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~ 198 (272)
T 3rfs_A 119 NQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPD 198 (272)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCT
T ss_pred CcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccCH
Confidence 99999999999999999999999999999999889999999999999999999999889999999999999999999887
Q ss_pred CC-CCCCCcccccCCCCCCCchhh-hhhhhhhhcc
Q psy12044 189 SN-ILPTGLHGIDLHHNPWTCDCL-LIGLRRWLES 221 (767)
Q Consensus 189 ~~-~~~~~L~~L~Ls~N~l~C~c~-l~~l~~~l~~ 221 (767)
.. ..+++|+.|+|++|+|.|+|. +.++..|...
T Consensus 199 ~~~~~l~~L~~L~l~~N~~~~~~~~l~~l~~~~n~ 233 (272)
T 3rfs_A 199 GVFDRLTSLQYIWLHDNPWDCTCPGIRYLSEWINK 233 (272)
T ss_dssp TTTTTCTTCCEEECCSSCBCCCTTTTHHHHHHHHH
T ss_pred HHHhCCcCCCEEEccCCCccccCcHHHHHHHHHHh
Confidence 64 467899999999999999996 6666666544
No 26
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.83 E-value=3.2e-20 Score=200.48 Aligned_cols=185 Identities=28% Similarity=0.505 Sum_probs=167.2
Q ss_pred hhccCCCCCceecccCCeeEEEecCCCccccccCCCCCccEEEeeCCCCCCCCchhhhccCCCCccEEEccCCCCCccCc
Q psy12044 13 KIVSACPTSCICKWKGGKQTVECVNKSLITVVEGMDPNTQVLDYTGNNLKTLHNEKFQKMGLVNLQKIYLSRCRISVIDS 92 (767)
Q Consensus 13 ~~~~~CP~~C~C~~~g~~~~v~C~~~~L~~iP~~l~~~L~~L~Ls~N~L~~l~~~~f~~~~L~~L~~L~Ls~N~L~~i~p 92 (767)
.....||..|.|.+ +.++|++..+..+|..+++.++.|+|++|.|+++++..|.+ +++|+.|+|++|.|+++.|
T Consensus 20 ~~~~~cp~~c~c~l----~~l~~~~~~l~~lp~~~~~~l~~L~L~~n~i~~~~~~~~~~--l~~L~~L~L~~n~l~~~~~ 93 (330)
T 1xku_A 20 PMGPVCPFRCQCHL----RVVQCSDLGLEKVPKDLPPDTALLDLQNNKITEIKDGDFKN--LKNLHTLILINNKISKISP 93 (330)
T ss_dssp --CCCCCTTCEEET----TEEECTTSCCCSCCCSCCTTCCEEECCSSCCCCBCTTTTTT--CTTCCEEECCSSCCCCBCT
T ss_pred cccCCCCCCCcCCC----eEEEecCCCccccCccCCCCCeEEECCCCcCCEeChhhhcc--CCCCCEEECCCCcCCeeCH
Confidence 34467999999997 45999999999999999999999999999999999988874 8999999999999999999
Q ss_pred ccccCCCCCCEEEccCCCCCCCCCCCCCCCCCCcEEECCCCcCcccccCCcCCCCCccEEeccCCCccc--cchhhhcCC
Q psy12044 93 KAFRGLTNLVDLDFSHNVLQTVPSDTFPDYPSLMKLTLSGNPIKQIKTGAFQPLSYLVTLELSKCGIEV--IEDAAFVGL 170 (767)
Q Consensus 93 ~~f~~L~~L~~L~Ls~N~Lt~l~p~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~L~~--i~~~~~~~l 170 (767)
..|.++++|++|+|++|.|+.++...+ ++|+.|+|++|.++++.+..|..+++|+.|+|++|.++. +.+..|..+
T Consensus 94 ~~~~~l~~L~~L~Ls~n~l~~l~~~~~---~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l 170 (330)
T 1xku_A 94 GAFAPLVKLERLYLSKNQLKELPEKMP---KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGM 170 (330)
T ss_dssp TTTTTCTTCCEEECCSSCCSBCCSSCC---TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGC
T ss_pred HHhcCCCCCCEEECCCCcCCccChhhc---ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCC
Confidence 999999999999999999998775543 799999999999999998889999999999999999964 677789999
Q ss_pred CCCCeeeccCCccccccCCCCCCCCcccccCCCCCCCc
Q psy12044 171 DSLEWLKLDNNKITTISGSNILPTGLHGIDLHHNPWTC 208 (767)
Q Consensus 171 ~~L~~L~Ls~N~Lt~ip~~~~~~~~L~~L~Ls~N~l~C 208 (767)
++|+.|++++|.++.++.... ++|+.|+|++|.+..
T Consensus 171 ~~L~~L~l~~n~l~~l~~~~~--~~L~~L~l~~n~l~~ 206 (330)
T 1xku_A 171 KKLSYIRIADTNITTIPQGLP--PSLTELHLDGNKITK 206 (330)
T ss_dssp TTCCEEECCSSCCCSCCSSCC--TTCSEEECTTSCCCE
T ss_pred CCcCEEECCCCccccCCcccc--ccCCEEECCCCcCCc
Confidence 999999999999999987654 789999999998863
No 27
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.83 E-value=3.9e-20 Score=181.68 Aligned_cols=165 Identities=32% Similarity=0.587 Sum_probs=107.2
Q ss_pred CCCCceecccCCeeEEEecCCCccccccCCCCCccEEEeeCCCCCCCCchhhhccCCCCccEEEccCCCCCccCcccccC
Q psy12044 18 CPTSCICKWKGGKQTVECVNKSLITVVEGMDPNTQVLDYTGNNLKTLHNEKFQKMGLVNLQKIYLSRCRISVIDSKAFRG 97 (767)
Q Consensus 18 CP~~C~C~~~g~~~~v~C~~~~L~~iP~~l~~~L~~L~Ls~N~L~~l~~~~f~~~~L~~L~~L~Ls~N~L~~i~p~~f~~ 97 (767)
||..|.|.|.+ ++|.+.++..+|..++++++.|+|++|.|+++++..| ..
T Consensus 1 Cp~~C~C~~~~----l~~~~~~l~~~p~~~~~~l~~L~l~~n~l~~~~~~~~--------------------------~~ 50 (177)
T 2o6r_A 1 CPSRCSCSGTE----IRCNSKGLTSVPTGIPSSATRLELESNKLQSLPHGVF--------------------------DK 50 (177)
T ss_dssp CCTTCEEETTE----EECCSSCCSSCCTTCCTTCSEEECCSSCCCCCCTTTT--------------------------TT
T ss_pred CcCCCEeCCCE----EEecCCCCccCCCCCCCCCcEEEeCCCcccEeCHHHh--------------------------cC
Confidence 99999999854 9999999988888777777777776666665554444 44
Q ss_pred CCCCCEEEccCCCCCCCCCCCCCCCCCCcEEECCCCcCcccccCCcCCCCCccEEeccCCCccccchhhhcCCCCCCeee
Q psy12044 98 LTNLVDLDFSHNVLQTVPSDTFPDYPSLMKLTLSGNPIKQIKTGAFQPLSYLVTLELSKCGIEVIEDAAFVGLDSLEWLK 177 (767)
Q Consensus 98 L~~L~~L~Ls~N~Lt~l~p~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~L~~i~~~~~~~l~~L~~L~ 177 (767)
+++|++|+|++|.|+++++..|..+++|+.|+|++|.|+++++..|..+++|+.|+|++|.|+++++..|..+
T Consensus 51 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l------- 123 (177)
T 2o6r_A 51 LTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRL------- 123 (177)
T ss_dssp CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTC-------
T ss_pred cccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCC-------
Confidence 4455555555555555555555555566666666666665555555555555555555555555444333333
Q ss_pred ccCCccccccCCCCCCCCcccccCCCCCCCchhh-hhhhhhhhccCCCCCccCCCCCCC
Q psy12044 178 LDNNKITTISGSNILPTGLHGIDLHHNPWTCDCL-LIGLRRWLESTKTPMAIDPICSVP 235 (767)
Q Consensus 178 Ls~N~Lt~ip~~~~~~~~L~~L~Ls~N~l~C~c~-l~~l~~~l~~~~~~~~~~~~C~~p 235 (767)
++|+.|+|++|+|.|+|. +.++..|+............|..+
T Consensus 124 ----------------~~L~~L~l~~N~~~~~~~~l~~l~~~~~~~~~~~~~~~~C~~~ 166 (177)
T 2o6r_A 124 ----------------TSLQKIWLHTNPWDCSCPRIDYLSRWLNKNSQKEQGSAKCSGS 166 (177)
T ss_dssp ----------------TTCCEEECCSSCBCCCHHHHHHHHHHHHHTGGGEESCCBBTTT
T ss_pred ----------------cccCEEEecCCCeeccCccHHHHHHHHhhCccccccCcEeCCC
Confidence 455566777788889997 788888888765544566677653
No 28
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.83 E-value=4.3e-20 Score=199.76 Aligned_cols=181 Identities=30% Similarity=0.529 Sum_probs=164.5
Q ss_pred ccCCCCCceecccCCeeEEEecCCCccccccCCCCCccEEEeeCCCCCCCCchhhhccCCCCccEEEccCCCCCccCccc
Q psy12044 15 VSACPTSCICKWKGGKQTVECVNKSLITVVEGMDPNTQVLDYTGNNLKTLHNEKFQKMGLVNLQKIYLSRCRISVIDSKA 94 (767)
Q Consensus 15 ~~~CP~~C~C~~~g~~~~v~C~~~~L~~iP~~l~~~L~~L~Ls~N~L~~l~~~~f~~~~L~~L~~L~Ls~N~L~~i~p~~ 94 (767)
...||..|.|.+. .++|++..+..+|..++++++.|+|++|.|+++.+..|.. +++|+.|+|++|.|+++.+..
T Consensus 24 ~~~cp~~c~c~l~----~l~~~~~~l~~ip~~~~~~l~~L~l~~n~i~~~~~~~~~~--l~~L~~L~L~~n~l~~~~~~~ 97 (332)
T 2ft3_A 24 SAMCPFGCHCHLR----VVQCSDLGLKAVPKEISPDTTLLDLQNNDISELRKDDFKG--LQHLYALVLVNNKISKIHEKA 97 (332)
T ss_dssp -CCCCSSCEEETT----EEECCSSCCSSCCSCCCTTCCEEECCSSCCCEECTTTTTT--CTTCCEEECCSSCCCEECGGG
T ss_pred cCCCCCCCcccCC----EEECCCCCccccCCCCCCCCeEEECCCCcCCccCHhHhhC--CCCCcEEECCCCccCccCHhH
Confidence 4679999999974 5999999999999999999999999999999999888874 899999999999999999999
Q ss_pred ccCCCCCCEEEccCCCCCCCCCCCCCCCCCCcEEECCCCcCcccccCCcCCCCCccEEeccCCCccc--cchhhhcCCCC
Q psy12044 95 FRGLTNLVDLDFSHNVLQTVPSDTFPDYPSLMKLTLSGNPIKQIKTGAFQPLSYLVTLELSKCGIEV--IEDAAFVGLDS 172 (767)
Q Consensus 95 f~~L~~L~~L~Ls~N~Lt~l~p~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~L~~--i~~~~~~~l~~ 172 (767)
|.++++|++|+|++|.|+.++...+ ++|++|+|++|.++.+++..|..+++|+.|+|++|.++. +.+..|..+ +
T Consensus 98 ~~~l~~L~~L~L~~n~l~~l~~~~~---~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~ 173 (332)
T 2ft3_A 98 FSPLRKLQKLYISKNHLVEIPPNLP---SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-K 173 (332)
T ss_dssp STTCTTCCEEECCSSCCCSCCSSCC---TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-C
T ss_pred hhCcCCCCEEECCCCcCCccCcccc---ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-c
Confidence 9999999999999999998876544 799999999999999998889999999999999999964 677778877 9
Q ss_pred CCeeeccCCccccccCCCCCCCCcccccCCCCCCC
Q psy12044 173 LEWLKLDNNKITTISGSNILPTGLHGIDLHHNPWT 207 (767)
Q Consensus 173 L~~L~Ls~N~Lt~ip~~~~~~~~L~~L~Ls~N~l~ 207 (767)
|+.|++++|+++.++.... ++|+.|+|++|.+.
T Consensus 174 L~~L~l~~n~l~~l~~~~~--~~L~~L~l~~n~i~ 206 (332)
T 2ft3_A 174 LNYLRISEAKLTGIPKDLP--ETLNELHLDHNKIQ 206 (332)
T ss_dssp CSCCBCCSSBCSSCCSSSC--SSCSCCBCCSSCCC
T ss_pred cCEEECcCCCCCccCcccc--CCCCEEECCCCcCC
Confidence 9999999999999987654 68999999999876
No 29
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.82 E-value=5.6e-20 Score=206.93 Aligned_cols=162 Identities=30% Similarity=0.479 Sum_probs=148.8
Q ss_pred CCccEEEccCCCCCccCcccccCCCCCCEEEccCCCCCCCCCCCCCCCCCCcEEECCCCcCcccccCCcCCCCCccEEec
Q psy12044 75 VNLQKIYLSRCRISVIDSKAFRGLTNLVDLDFSHNVLQTVPSDTFPDYPSLMKLTLSGNPIKQIKTGAFQPLSYLVTLEL 154 (767)
Q Consensus 75 ~~L~~L~Ls~N~L~~i~p~~f~~L~~L~~L~Ls~N~Lt~l~p~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L 154 (767)
.+|+.|+|++|.+.++.+..|..+++|++|+|++|.|+++++..|..+++|+.|+|++|.++++.+..|..+++|+.|+|
T Consensus 275 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 354 (455)
T 3v47_A 275 SGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDL 354 (455)
T ss_dssp SCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEEC
T ss_pred cCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEEC
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCccccchhhhcCCCCCCeeeccCCccccccCCCC-CCCCcccccCCCCCCCchhh-hhhhhhhhccCCCCCccCCCC
Q psy12044 155 SKCGIEVIEDAAFVGLDSLEWLKLDNNKITTISGSNI-LPTGLHGIDLHHNPWTCDCL-LIGLRRWLESTKTPMAIDPIC 232 (767)
Q Consensus 155 s~N~L~~i~~~~~~~l~~L~~L~Ls~N~Lt~ip~~~~-~~~~L~~L~Ls~N~l~C~c~-l~~l~~~l~~~~~~~~~~~~C 232 (767)
++|.|+++.+..|..+++|+.|+|++|+|+.++...+ .+++|+.|+|++|+|.|+|. +.|+..|+............|
T Consensus 355 s~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~l~~~l~~~~~~~~~~~~c 434 (455)
T 3v47_A 355 SYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSRWLNKNSQKEQGSAKC 434 (455)
T ss_dssp CSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTTTHHHHHHHHHTTTTEESCCBB
T ss_pred CCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCcccCCCcchHHHHHHHhCccceeeeeee
Confidence 9999999999999999999999999999999988654 57899999999999999998 788899998776655566677
Q ss_pred CCCC
Q psy12044 233 SVPP 236 (767)
Q Consensus 233 ~~p~ 236 (767)
..+.
T Consensus 435 ~~~~ 438 (455)
T 3v47_A 435 SGSG 438 (455)
T ss_dssp TTTC
T ss_pred cCCC
Confidence 7643
No 30
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.82 E-value=1e-19 Score=208.72 Aligned_cols=200 Identities=22% Similarity=0.308 Sum_probs=167.9
Q ss_pred EEEecCCCcccccc-CCCCCccEEEeeCCCCCCCCchhhhccCCCCccEEEccCCCCCcc--CcccccCCCCCCEEEccC
Q psy12044 32 TVECVNKSLITVVE-GMDPNTQVLDYTGNNLKTLHNEKFQKMGLVNLQKIYLSRCRISVI--DSKAFRGLTNLVDLDFSH 108 (767)
Q Consensus 32 ~v~C~~~~L~~iP~-~l~~~L~~L~Ls~N~L~~l~~~~f~~~~L~~L~~L~Ls~N~L~~i--~p~~f~~L~~L~~L~Ls~ 108 (767)
.++.++..+..++. .-.++|++|+|++|.+++..+..+.. +++|+.|+|++|+|+++ .|..|..+++|++|+|++
T Consensus 306 ~L~l~~n~l~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~--l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~ 383 (520)
T 2z7x_B 306 NFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGH--LTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQ 383 (520)
T ss_dssp EEEEESSCCCCCCCCSSCCCCCEEECCSSCCCTTTTTTCCC--CSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCS
T ss_pred EEEcCCCccccccchhhCCcccEEEeECCccChhhhhhhcc--CCCCCEEEccCCccCccccchHHHhhCCCCCEEECCC
Confidence 34444444444432 44678999999999999977777774 89999999999999984 457799999999999999
Q ss_pred CCCCC-CCCCCCCCCCCCcEEECCCCcCcccccCCcCCCCCccEEeccCCCccccchhhhcCCCCCCeeeccCCcccccc
Q psy12044 109 NVLQT-VPSDTFPDYPSLMKLTLSGNPIKQIKTGAFQPLSYLVTLELSKCGIEVIEDAAFVGLDSLEWLKLDNNKITTIS 187 (767)
Q Consensus 109 N~Lt~-l~p~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~L~~i~~~~~~~l~~L~~L~Ls~N~Lt~ip 187 (767)
|.+++ ++...|..+++|+.|+|++|.+++..+..+. ++|+.|+|++|.|+.++.. +..+++|+.|+|++|+|+.+|
T Consensus 384 N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~~ip~~-~~~l~~L~~L~L~~N~l~~l~ 460 (520)
T 2z7x_B 384 NSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIKSIPKQ-VVKLEALQELNVASNQLKSVP 460 (520)
T ss_dssp SCCBCCGGGCSCCCCTTCCEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCCCCCGG-GGGCTTCCEEECCSSCCCCCC
T ss_pred CcCCcccccchhccCccCCEEECcCCCCCcchhhhhc--ccCCEEECCCCcccccchh-hhcCCCCCEEECCCCcCCccC
Confidence 99998 6666788999999999999999887665553 7899999999999977665 458999999999999999999
Q ss_pred CC-CCCCCCcccccCCCCCCCchhhhhhh-hhhhccCCCCCccCCCCCCCC
Q psy12044 188 GS-NILPTGLHGIDLHHNPWTCDCLLIGL-RRWLESTKTPMAIDPICSVPP 236 (767)
Q Consensus 188 ~~-~~~~~~L~~L~Ls~N~l~C~c~l~~l-~~~l~~~~~~~~~~~~C~~p~ 236 (767)
.. +..+++|+.|+|++|+|.|+|.+.|+ ..|+.........+..|..|.
T Consensus 461 ~~~~~~l~~L~~L~l~~N~~~c~c~~~~~~~~~~~~~~~~~~~~~~C~~p~ 511 (520)
T 2z7x_B 461 DGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSRWLNKNSQKEQGSAKCSGSG 511 (520)
T ss_dssp TTTTTTCTTCCEEECCSSCBCCCHHHHHHHHHHHHHTTTTEESCCBBTTTC
T ss_pred HHHhccCCcccEEECcCCCCcccCCchHHHHHHHHhccccCCCCCCcCCcc
Confidence 87 55678999999999999999999999 999988766556778898874
No 31
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.82 E-value=2e-20 Score=218.63 Aligned_cols=197 Identities=25% Similarity=0.395 Sum_probs=140.6
Q ss_pred CCccEEEeeCCCCCCCCch-hhhccCCCCccEEEccCCCCCccCcccccCCCCCCEEEccCCCCCC---CCCCCCCCCCC
Q psy12044 49 PNTQVLDYTGNNLKTLHNE-KFQKMGLVNLQKIYLSRCRISVIDSKAFRGLTNLVDLDFSHNVLQT---VPSDTFPDYPS 124 (767)
Q Consensus 49 ~~L~~L~Ls~N~L~~l~~~-~f~~~~L~~L~~L~Ls~N~L~~i~p~~f~~L~~L~~L~Ls~N~Lt~---l~p~~f~~l~~ 124 (767)
++|+.|+|++|.+.+..+. .|. .+++|+.|+|++|.+.+..+..|..+++|++|+|++|.+++ ..+..|..+++
T Consensus 400 ~~L~~L~l~~n~l~~~~~~~~~~--~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~ 477 (606)
T 3t6q_A 400 PQLELLDLAFTRLKVKDAQSPFQ--NLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGR 477 (606)
T ss_dssp TTCSEEECTTCCEECCTTCCTTT--TCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTT
T ss_pred ccCCeEECCCCcCCCcccchhhh--CcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCC
Confidence 4555556665555544332 243 25666666666666666666666666667777776666655 22244666677
Q ss_pred CcEEECCCCcCcccccCCcCCCCCccEEeccCCCccccchhhhcCCCCCCeeeccCCccccccCCC-CCCCCcccccCCC
Q psy12044 125 LMKLTLSGNPIKQIKTGAFQPLSYLVTLELSKCGIEVIEDAAFVGLDSLEWLKLDNNKITTISGSN-ILPTGLHGIDLHH 203 (767)
Q Consensus 125 L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~L~~i~~~~~~~l~~L~~L~Ls~N~Lt~ip~~~-~~~~~L~~L~Ls~ 203 (767)
|+.|+|++|.++++.+..|..+++|+.|+|++|.|+++.+..|..+++| .|+|++|+|+.+++.. ..+++|+.|++++
T Consensus 478 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~ 556 (606)
T 3t6q_A 478 LEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQ 556 (606)
T ss_dssp CCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEECTT
T ss_pred ccEEECCCCccCccChhhhccccCCCEEECCCCccCcCChhHhCccccc-EEECcCCcccccCHhhcccCCCCCEEeCCC
Confidence 7777777777777777777777888888888888888777778778888 8888888888766553 2357889999999
Q ss_pred CCCCchhhhhhhhhhhccCCCC--CccCCCCCCCCCCCCCccccccc
Q psy12044 204 NPWTCDCLLIGLRRWLESTKTP--MAIDPICSVPPRLSSVTIKQLSI 248 (767)
Q Consensus 204 N~l~C~c~l~~l~~~l~~~~~~--~~~~~~C~~p~~l~g~~i~~l~~ 248 (767)
|+|.|+|.+.|+..|+...... ......|..|..++|..+.+++.
T Consensus 557 N~~~c~c~~~~~~~w~~~~~~~~~~~~~~~C~~p~~~~g~~l~~~~~ 603 (606)
T 3t6q_A 557 NPLDCTCSNIYFLEWYKENMQKLEDTEDTLCENPPLLRGVRLSDVTL 603 (606)
T ss_dssp CCEECSGGGHHHHHHHHHCGGGEECGGGCBEEESGGGTTCBGGGCCC
T ss_pred CCccccCCcHHHHHHHHhCcccccCCCCCeeCCchHhCCCeeeeeec
Confidence 9999999999999999865322 23567899999999998888754
No 32
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.82 E-value=5.1e-20 Score=207.27 Aligned_cols=167 Identities=25% Similarity=0.392 Sum_probs=147.0
Q ss_pred cCCCCCceecccCCeeEEEecCCCccccccCCCCCccEEEeeCCCCCCCCchhhhccCCCCccEEEccCCCCCc-cCccc
Q psy12044 16 SACPTSCICKWKGGKQTVECVNKSLITVVEGMDPNTQVLDYTGNNLKTLHNEKFQKMGLVNLQKIYLSRCRISV-IDSKA 94 (767)
Q Consensus 16 ~~CP~~C~C~~~g~~~~v~C~~~~L~~iP~~l~~~L~~L~Ls~N~L~~l~~~~f~~~~L~~L~~L~Ls~N~L~~-i~p~~ 94 (767)
..||..|.|.+ ..++|++.++..+|. +++++++|+|++|.|+++.+..|.+ +++|+.|+|++|.+.+ +.+..
T Consensus 2 ~p~~~~c~~~~----~~~~c~~~~l~~lp~-l~~~l~~L~Ls~n~i~~~~~~~~~~--l~~L~~L~L~~n~~~~~i~~~~ 74 (455)
T 3v47_A 2 DPGTSECSVIG----YNAICINRGLHQVPE-LPAHVNYVDLSLNSIAELNETSFSR--LQDLQFLKVEQQTPGLVIRNNT 74 (455)
T ss_dssp -----CCEEET----TEEECCSSCCSSCCC-CCTTCCEEECCSSCCCEECTTTTSS--CTTCCEEECCCCSTTCEECTTT
T ss_pred CCccceeEEEc----cccCcCCCCcccCCC-CCCccCEEEecCCccCcCChhHhcc--CccccEEECcCCcccceECccc
Confidence 46888999874 469999999999999 8899999999999999998888884 8999999999999984 55778
Q ss_pred ccCCCCCCEEEccCCCCCCCCCCCCCCCCCCcEEECCCCcCcccc--cCCcCCCCCccEEeccCCCccccchhh-hcCCC
Q psy12044 95 FRGLTNLVDLDFSHNVLQTVPSDTFPDYPSLMKLTLSGNPIKQIK--TGAFQPLSYLVTLELSKCGIEVIEDAA-FVGLD 171 (767)
Q Consensus 95 f~~L~~L~~L~Ls~N~Lt~l~p~~f~~l~~L~~L~Ls~N~l~~l~--~~~~~~l~~L~~L~Ls~N~L~~i~~~~-~~~l~ 171 (767)
|.++++|++|+|++|.++++.+..|..+++|++|+|++|.+++.. ...|..+++|+.|+|++|.|+++.+.. |..++
T Consensus 75 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~ 154 (455)
T 3v47_A 75 FRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMR 154 (455)
T ss_dssp TTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCT
T ss_pred ccccccCCEEeCCCCccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCC
Confidence 999999999999999999999999999999999999999999843 445899999999999999999997765 88999
Q ss_pred CCCeeeccCCccccccCC
Q psy12044 172 SLEWLKLDNNKITTISGS 189 (767)
Q Consensus 172 ~L~~L~Ls~N~Lt~ip~~ 189 (767)
+|+.|+|++|.++.+.+.
T Consensus 155 ~L~~L~L~~n~l~~~~~~ 172 (455)
T 3v47_A 155 RFHVLDLTFNKVKSICEE 172 (455)
T ss_dssp TCCEEECTTCCBSCCCTT
T ss_pred cccEEeCCCCcccccChh
Confidence 999999999999977654
No 33
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.81 E-value=4.9e-20 Score=215.26 Aligned_cols=189 Identities=23% Similarity=0.277 Sum_probs=167.2
Q ss_pred cCCCCCceecccCCeeEEEecCCCccccccCCCCCccEEEeeCCCCCCCCchhhhccCCCCccEEEccCCCCCccCcccc
Q psy12044 16 SACPTSCICKWKGGKQTVECVNKSLITVVEGMDPNTQVLDYTGNNLKTLHNEKFQKMGLVNLQKIYLSRCRISVIDSKAF 95 (767)
Q Consensus 16 ~~CP~~C~C~~~g~~~~v~C~~~~L~~iP~~l~~~L~~L~Ls~N~L~~l~~~~f~~~~L~~L~~L~Ls~N~L~~i~p~~f 95 (767)
..|+..|.|... ...++|.+.++..+|..++..+++|+|++|.|+++.+..|.. +++|++|+|++|.|..+.|.+|
T Consensus 2 ~~~~~~C~~~~~--~~~~~c~~~~l~~iP~~l~~~l~~L~Ls~n~i~~~~~~~~~~--l~~L~~L~Ls~n~i~~~~~~~~ 77 (606)
T 3t6q_A 2 TSSDQKCIEKEV--NKTYNCENLGLNEIPGTLPNSTECLEFSFNVLPTIQNTTFSR--LINLTFLDLTRCQIYWIHEDTF 77 (606)
T ss_dssp ----CCCEEEET--TTEEECTTSCCSSCCTTSCTTCCEEECTTCCCSEECTTTSTT--CTTCSEEECTTCCCCEECTTTT
T ss_pred ccccCceecccC--CceEECCCCCcccCcCCCCCcCcEEEccCCccCcCChhHhcc--CccceEEECCCCccceeChhhc
Confidence 468999999743 368999999999999999999999999999999999988984 9999999999999999999999
Q ss_pred cCCCCCCEEEccCCCCCCCCCCCCCCCCCCcEEECCCCcCcccccCCcCCCCCccEEeccCCCccccchhhhcCCCCCCe
Q psy12044 96 RGLTNLVDLDFSHNVLQTVPSDTFPDYPSLMKLTLSGNPIKQIKTGAFQPLSYLVTLELSKCGIEVIEDAAFVGLDSLEW 175 (767)
Q Consensus 96 ~~L~~L~~L~Ls~N~Lt~l~p~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~L~~i~~~~~~~l~~L~~ 175 (767)
.++++|++|+|++|.++++.|..|..+++|++|+|++|.++++.+..|..+++|+.|+|++|.++++....+..+++|+.
T Consensus 78 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 157 (606)
T 3t6q_A 78 QSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKV 157 (606)
T ss_dssp TTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCE
T ss_pred cCccccCeeeCCCCcccccChhhhcccccccEeeccccCcccCCcchhccCCcccEEECCCCcccccCcccccCCcccCE
Confidence 99999999999999999999999999999999999999999998888999999999999999999976555666999999
Q ss_pred eeccCCccccccCC-CCCCCCcc--cccCCCCCCCc
Q psy12044 176 LKLDNNKITTISGS-NILPTGLH--GIDLHHNPWTC 208 (767)
Q Consensus 176 L~Ls~N~Lt~ip~~-~~~~~~L~--~L~Ls~N~l~C 208 (767)
|+|++|.++.+++. +..+.+|+ .|++++|.+..
T Consensus 158 L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n~l~~ 193 (606)
T 3t6q_A 158 LDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAG 193 (606)
T ss_dssp EECCSSCCCEECHHHHHTTTTCCSEEEECTTCCCCE
T ss_pred EEcccCcccccChhhhhhhcccceeEEecCCCccCc
Confidence 99999999987543 34556777 78999998864
No 34
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.81 E-value=5.7e-20 Score=200.69 Aligned_cols=184 Identities=24% Similarity=0.349 Sum_probs=158.7
Q ss_pred CCCCC-ceecccCCeeEEEecCCCccccccCCCCCccEEEeeCCCCCCCCchhhhccCCCCccEEEccCCCCCc-cCccc
Q psy12044 17 ACPTS-CICKWKGGKQTVECVNKSLITVVEGMDPNTQVLDYTGNNLKTLHNEKFQKMGLVNLQKIYLSRCRISV-IDSKA 94 (767)
Q Consensus 17 ~CP~~-C~C~~~g~~~~v~C~~~~L~~iP~~l~~~L~~L~Ls~N~L~~l~~~~f~~~~L~~L~~L~Ls~N~L~~-i~p~~ 94 (767)
+||+. |.|.+ .+|+|++.+++.||.++++++++|+|++|+|+.+++..|.. +++|+.|+|++|.+.+ +.+.+
T Consensus 1 gCp~~~C~C~~----~~v~C~~~~Lt~iP~~l~~~l~~L~Ls~N~i~~i~~~~f~~--l~~L~~L~Ls~N~i~~~i~~~~ 74 (350)
T 4ay9_X 1 GCHHRICHCSN----RVFLCQESKVTEIPSDLPRNAIELRFVLTKLRVIQKGAFSG--FGDLEKIEISQNDVLEVIEADV 74 (350)
T ss_dssp -CCCSSSEEET----TEEEEESTTCCSCCTTCCTTCSEEEEESCCCSEECTTSSTT--CTTCCEEEEECCTTCCEECTTS
T ss_pred CCCCCccEeeC----CEEEecCCCCCccCcCcCCCCCEEEccCCcCCCcCHHHHcC--CCCCCEEECcCCCCCCccChhH
Confidence 69985 99986 46999999999999999999999999999999999999984 9999999999999865 55678
Q ss_pred ccCCCCCCE-EEccCCCCCCCCCCCCCCCCCCcEEECCCCcCcccccCCcCCCCCccEEeccC-CCccccchhhhcCCC-
Q psy12044 95 FRGLTNLVD-LDFSHNVLQTVPSDTFPDYPSLMKLTLSGNPIKQIKTGAFQPLSYLVTLELSK-CGIEVIEDAAFVGLD- 171 (767)
Q Consensus 95 f~~L~~L~~-L~Ls~N~Lt~l~p~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~-N~L~~i~~~~~~~l~- 171 (767)
|.++++|.+ +.++.|+|+.+++..|..+++|+.|++++|.|+.+++..+....++..|++.+ +.+..++...|..+.
T Consensus 75 f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~ 154 (350)
T 4ay9_X 75 FSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSF 154 (350)
T ss_dssp BCSCTTCCEEEEEEETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBS
T ss_pred hhcchhhhhhhcccCCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcch
Confidence 999998875 66678999999999999999999999999999999887777777888888865 578888877777764
Q ss_pred CCCeeeccCCccccccCCCCCCCCcccccCCC-CCC
Q psy12044 172 SLEWLKLDNNKITTISGSNILPTGLHGIDLHH-NPW 206 (767)
Q Consensus 172 ~L~~L~Ls~N~Lt~ip~~~~~~~~L~~L~Ls~-N~l 206 (767)
.|+.|+|++|+|+.|+...+...+|..|++.+ |.+
T Consensus 155 ~l~~L~L~~N~i~~i~~~~f~~~~L~~l~l~~~n~l 190 (350)
T 4ay9_X 155 ESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNL 190 (350)
T ss_dssp SCEEEECCSSCCCEECTTSSTTEEEEEEECTTCTTC
T ss_pred hhhhhccccccccCCChhhccccchhHHhhccCCcc
Confidence 57889999999999888887777888888875 444
No 35
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.80 E-value=3.4e-19 Score=208.15 Aligned_cols=185 Identities=26% Similarity=0.373 Sum_probs=162.9
Q ss_pred CCCceecccCCeeEEEecCCCccccccCCCCCccEEEeeCCCCCCCCchhhhccCCCCccEEEccCCCCCccCcccccCC
Q psy12044 19 PTSCICKWKGGKQTVECVNKSLITVVEGMDPNTQVLDYTGNNLKTLHNEKFQKMGLVNLQKIYLSRCRISVIDSKAFRGL 98 (767)
Q Consensus 19 P~~C~C~~~g~~~~v~C~~~~L~~iP~~l~~~L~~L~Ls~N~L~~l~~~~f~~~~L~~L~~L~Ls~N~L~~i~p~~f~~L 98 (767)
..+|.|... ...++|++.++..+|..+++++++|+|++|.|+++.+..|.+ +++|+.|+|++|.|+++.+.+|.++
T Consensus 4 ~~~c~~~~~--~~~~~c~~~~l~~ip~~~~~~l~~L~Ls~n~l~~~~~~~~~~--l~~L~~L~Ls~n~l~~i~~~~~~~l 79 (606)
T 3vq2_A 4 LNPCIEVVP--NITYQCMDQKLSKVPDDIPSSTKNIDLSFNPLKILKSYSFSN--FSELQWLDLSRCEIETIEDKAWHGL 79 (606)
T ss_dssp --CCEEEET--TTEEECTTSCCSSCCTTSCTTCCEEECTTSCCCEECTTTTTT--CTTCCEEECTTCCCCEECTTTTTTC
T ss_pred CCCceecCC--CCceEccCCCcccCCCCCCCCcCEEECCCCCcCEeChhhccC--CccCcEEeCCCCcccccCHHHhhch
Confidence 344777543 367999999999999999999999999999999999988884 8999999999999999999999999
Q ss_pred CCCCEEEccCCCCCCCCCCCCCCCCCCcEEECCCCcCcccccCCcCCCCCccEEeccCCCcccc-chhhhcCCCCCCeee
Q psy12044 99 TNLVDLDFSHNVLQTVPSDTFPDYPSLMKLTLSGNPIKQIKTGAFQPLSYLVTLELSKCGIEVI-EDAAFVGLDSLEWLK 177 (767)
Q Consensus 99 ~~L~~L~Ls~N~Lt~l~p~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~L~~i-~~~~~~~l~~L~~L~ 177 (767)
++|++|+|++|.|+++.|..|..+++|++|+|++|.++++++..|..+++|+.|+|++|.++++ .|..|..+++|+.|+
T Consensus 80 ~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~ 159 (606)
T 3vq2_A 80 HHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVD 159 (606)
T ss_dssp TTCCEEECTTCCCCCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEE
T ss_pred hhcCEeECCCCcccccChhhcCCcccCCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEE
Confidence 9999999999999999999999999999999999999999988899999999999999999874 477899999999999
Q ss_pred ccCCccccccCCCC-CCCC----cccccCCCCCCC
Q psy12044 178 LDNNKITTISGSNI-LPTG----LHGIDLHHNPWT 207 (767)
Q Consensus 178 Ls~N~Lt~ip~~~~-~~~~----L~~L~Ls~N~l~ 207 (767)
|++|+++.+++..+ .+.+ +..|++++|.+.
T Consensus 160 Ls~n~l~~~~~~~~~~l~~L~~~l~~L~l~~n~l~ 194 (606)
T 3vq2_A 160 LSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPID 194 (606)
T ss_dssp CCSSCCCEECTTTTHHHHHCTTCCCEEECTTCCCC
T ss_pred ccCCcceecChhhhhhhhccccccceeeccCCCcc
Confidence 99999998765533 2222 346777777765
No 36
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.80 E-value=8.6e-19 Score=203.34 Aligned_cols=189 Identities=22% Similarity=0.279 Sum_probs=159.2
Q ss_pred EEEecCCCcccccc-CCCCCccEEEeeCCCCCCCCchhhhccCCCCccEEEccCCCCCccC--cccccCCCCCCEEEccC
Q psy12044 32 TVECVNKSLITVVE-GMDPNTQVLDYTGNNLKTLHNEKFQKMGLVNLQKIYLSRCRISVID--SKAFRGLTNLVDLDFSH 108 (767)
Q Consensus 32 ~v~C~~~~L~~iP~-~l~~~L~~L~Ls~N~L~~l~~~~f~~~~L~~L~~L~Ls~N~L~~i~--p~~f~~L~~L~~L~Ls~ 108 (767)
.++.++..+..++. .-.++|++|+|++|.|++..+..+.. +++|+.|+|++|+|+++. |..|.++++|++|+|++
T Consensus 335 ~L~l~~n~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~--l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~ 412 (562)
T 3a79_B 335 MLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCST--LKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSL 412 (562)
T ss_dssp EEEEESSCCCCCCCCSSCCCCCEEECCSSCCCTTTTTTCCS--CSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTT
T ss_pred EEEccCCCcccccCccCCCCceEEECCCCccccchhhhhcc--cCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCC
Confidence 34444444443332 44678999999999999988877874 899999999999999865 46789999999999999
Q ss_pred CCCCC-CCCCCCCCCCCCcEEECCCCcCcccccCCcCCCCCccEEeccCCCccccchhhhcCCCCCCeeeccCCcccccc
Q psy12044 109 NVLQT-VPSDTFPDYPSLMKLTLSGNPIKQIKTGAFQPLSYLVTLELSKCGIEVIEDAAFVGLDSLEWLKLDNNKITTIS 187 (767)
Q Consensus 109 N~Lt~-l~p~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~L~~i~~~~~~~l~~L~~L~Ls~N~Lt~ip 187 (767)
|.+++ ++...|..+++|+.|+|++|.+++..+..+. ++|+.|+|++|.|+.++...+ .+++|+.|+|++|+|+.+|
T Consensus 413 N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~~ip~~~~-~l~~L~~L~L~~N~l~~l~ 489 (562)
T 3a79_B 413 NSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIMSIPKDVT-HLQALQELNVASNQLKSVP 489 (562)
T ss_dssp SCCBSCCSSCCCCCCTTCCEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCCCCCTTTT-SSCCCSEEECCSSCCCCCC
T ss_pred CcCCCccChhhhcCcccCCEEECCCCCCCcchhhhhc--CcCCEEECCCCcCcccChhhc-CCCCCCEEECCCCCCCCCC
Confidence 99998 7777799999999999999999887665543 789999999999998877655 8999999999999999999
Q ss_pred CC-CCCCCCcccccCCCCCCCchhhhhhhhh-hhccCCCC
Q psy12044 188 GS-NILPTGLHGIDLHHNPWTCDCLLIGLRR-WLESTKTP 225 (767)
Q Consensus 188 ~~-~~~~~~L~~L~Ls~N~l~C~c~l~~l~~-~l~~~~~~ 225 (767)
.. +..+++|+.|+|++|+|.|+|.+.|+.. |.......
T Consensus 490 ~~~~~~l~~L~~L~l~~N~~~c~c~~~~~~~~~~~~~~~~ 529 (562)
T 3a79_B 490 DGVFDRLTSLQYIWLHDNPWDCTCPGIRYLSEWINKHSGV 529 (562)
T ss_dssp TTSTTTCTTCCCEECCSCCBCCCHHHHHHHHHHHHHTTTT
T ss_pred HHHHhcCCCCCEEEecCCCcCCCcchHHHHHHHHHhcCCc
Confidence 87 5567899999999999999999999965 87665433
No 37
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.80 E-value=2.4e-19 Score=218.11 Aligned_cols=214 Identities=26% Similarity=0.409 Sum_probs=140.5
Q ss_pred eEEEecCCCccccccCC---CCCccEEEeeCCCCCCCCchhhhccCCCCccEEEccCCCCCccCcccccCCCCCCEEEcc
Q psy12044 31 QTVECVNKSLITVVEGM---DPNTQVLDYTGNNLKTLHNEKFQKMGLVNLQKIYLSRCRISVIDSKAFRGLTNLVDLDFS 107 (767)
Q Consensus 31 ~~v~C~~~~L~~iP~~l---~~~L~~L~Ls~N~L~~l~~~~f~~~~L~~L~~L~Ls~N~L~~i~p~~f~~L~~L~~L~Ls 107 (767)
+.++.++..+..++... .++|+.|+|++|.|+++.+..|.. +++|+.|+|++|.|+++.+..|.++++|+.|+|+
T Consensus 269 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~--l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~ 346 (844)
T 3j0a_A 269 RHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYG--LDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQ 346 (844)
T ss_dssp CEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTT--CSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECC
T ss_pred cEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcC--CCCCCEEECCCCCCCccCHHHhcCCCCCCEEECC
Confidence 44555555555554332 356666666666666666666653 6666666666666666666666666666666666
Q ss_pred CCCCCCCCCCCCCCCCCCcEEECCCCcCcccc------------------------------------------------
Q psy12044 108 HNVLQTVPSDTFPDYPSLMKLTLSGNPIKQIK------------------------------------------------ 139 (767)
Q Consensus 108 ~N~Lt~l~p~~f~~l~~L~~L~Ls~N~l~~l~------------------------------------------------ 139 (767)
+|.|+.+.+..|..+++|+.|+|++|.++++.
T Consensus 347 ~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~L~~L~l~~N~l~~l~~~~~~l~~L~ls~N~l~~l~~~~~~~~l~ 426 (844)
T 3j0a_A 347 KNHIAIIQDQTFKFLEKLQTLDLRDNALTTIHFIPSIPDIFLSGNKLVTLPKINLTANLIHLSENRLENLDILYFLLRVP 426 (844)
T ss_dssp SCCCCCCCSSCSCSCCCCCEEEEETCCSCCCSSCCSCSEEEEESCCCCCCCCCCTTCCEEECCSCCCCSSTTHHHHTTCT
T ss_pred CCCCCccChhhhcCCCCCCEEECCCCCCCcccCCCCcchhccCCCCcccccccccccceeecccCccccCchhhhhhcCC
Confidence 66666666555555555555555555443211
Q ss_pred ----------------------------------------------cCCcCCCCCccEEeccCCCccccchhhhcCCCCC
Q psy12044 140 ----------------------------------------------TGAFQPLSYLVTLELSKCGIEVIEDAAFVGLDSL 173 (767)
Q Consensus 140 ----------------------------------------------~~~~~~l~~L~~L~Ls~N~L~~i~~~~~~~l~~L 173 (767)
+..|..+++|+.|+|++|.|+++++..|..+++|
T Consensus 427 ~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L 506 (844)
T 3j0a_A 427 HLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTAL 506 (844)
T ss_dssp TCCEEEEESCCCCCCCSSSSSCSCTTCCBCEEESCCCSSSCCSCCCSSCSSCBCCEECCCCCHHHHTTCCTTSSSSCCSC
T ss_pred ccceeeCCCCcccccccccccccCCccccccCCCCccccccccccchhhhcCcccccEEECCCCcccccChhHccchhhh
Confidence 1224456677777777777777777778888888
Q ss_pred CeeeccCCccccccCCCCC--------------------CCCcccccCCCCCCCchhhhhhhhhhhccCCCCCc---cCC
Q psy12044 174 EWLKLDNNKITTISGSNIL--------------------PTGLHGIDLHHNPWTCDCLLIGLRRWLESTKTPMA---IDP 230 (767)
Q Consensus 174 ~~L~Ls~N~Lt~ip~~~~~--------------------~~~L~~L~Ls~N~l~C~c~l~~l~~~l~~~~~~~~---~~~ 230 (767)
+.|+|++|+|+.+++..+. ..+|+.|++++|+|.|+|.+.|+..|+...+.... ...
T Consensus 507 ~~L~Ls~N~l~~l~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~L~~l~l~~Np~~C~c~~~~f~~~~~~~~~~~~~~~~~~ 586 (844)
T 3j0a_A 507 RGLSLNSNRLTVLSHNDLPANLEILDISRNQLLAPNPDVFVSLSVLDITHNKFICECELSTFINWLNHTNVTIAGPPADI 586 (844)
T ss_dssp SEEEEESCCCSSCCCCCCCSCCCEEEEEEECCCCCCSCCCSSCCEEEEEEECCCCSSSCCSHHHHHHHTTTTTCCCGGGC
T ss_pred heeECCCCCCCccChhhhhccccEEECCCCcCCCCChhHhCCcCEEEecCCCcccccccHHHHHHHHhcCcccccccccC
Confidence 8888888888877665432 13567788999999999999999999876554332 455
Q ss_pred CCCCCCCCCCCccccc
Q psy12044 231 ICSVPPRLSSVTIKQL 246 (767)
Q Consensus 231 ~C~~p~~l~g~~i~~l 246 (767)
.|..|..+.|..+.++
T Consensus 587 ~C~~p~~~~g~~l~~~ 602 (844)
T 3j0a_A 587 YCVYPDSFSGVSLFSL 602 (844)
T ss_dssp CCSSCSSSCSCCTTTC
T ss_pred ccCCchhhCCCccccC
Confidence 7888777776655443
No 38
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.79 E-value=2.9e-19 Score=211.74 Aligned_cols=182 Identities=27% Similarity=0.408 Sum_probs=166.3
Q ss_pred CceecccCCeeEEEecCCCccccccCCCCCccEEEeeCCCCCCCCchhhhccCCCCccEEEccCCCCCccCcccccCCCC
Q psy12044 21 SCICKWKGGKQTVECVNKSLITVVEGMDPNTQVLDYTGNNLKTLHNEKFQKMGLVNLQKIYLSRCRISVIDSKAFRGLTN 100 (767)
Q Consensus 21 ~C~C~~~g~~~~v~C~~~~L~~iP~~l~~~L~~L~Ls~N~L~~l~~~~f~~~~L~~L~~L~Ls~N~L~~i~p~~f~~L~~ 100 (767)
+|.|.+ ..++|++.++..+|..+++++++|+|++|.|+++++..|.+ +++|+.|+|++|.++++.+.+|.++++
T Consensus 1 ~C~~~~----~~~~cs~~~L~~ip~~~~~~l~~L~Ls~n~l~~~~~~~~~~--l~~L~~L~Ls~n~l~~~~~~~~~~l~~ 74 (680)
T 1ziw_A 1 KCTVSH----EVADCSHLKLTQVPDDLPTNITVLNLTHNQLRRLPAANFTR--YSQLTSLDVGFNTISKLEPELCQKLPM 74 (680)
T ss_dssp ---CBS----SEEECCSSCCSSCCSCSCTTCSEEECCSSCCCCCCGGGGGG--GTTCSEEECCSSCCCCCCTTHHHHCTT
T ss_pred CceeEC----CeeECCCCCccccccccCCCCcEEECCCCCCCCcCHHHHhC--CCcCcEEECCCCccCccCHHHHhcccC
Confidence 478874 57999999999999999999999999999999999998985 899999999999999999999999999
Q ss_pred CCEEEccCCCCCCCCCCCCCCCCCCcEEECCCCcCcccccCCcCCCCCccEEeccCCCccccchhhhcCCCCCCeeeccC
Q psy12044 101 LVDLDFSHNVLQTVPSDTFPDYPSLMKLTLSGNPIKQIKTGAFQPLSYLVTLELSKCGIEVIEDAAFVGLDSLEWLKLDN 180 (767)
Q Consensus 101 L~~L~Ls~N~Lt~l~p~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~L~~i~~~~~~~l~~L~~L~Ls~ 180 (767)
|++|+|++|.|+.+++..|..+++|++|+|++|.++++++..|..+++|+.|+|++|.++++.+..|..+++|+.|+|++
T Consensus 75 L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~ 154 (680)
T 1ziw_A 75 LKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSN 154 (680)
T ss_dssp CCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCS
T ss_pred cCEEECCCCccCccChhhhccCCCCCEEECCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccC
Confidence 99999999999999988999999999999999999999999999999999999999999999988899999999999999
Q ss_pred CccccccCCC---CCCCCcccccCCCCCCCc
Q psy12044 181 NKITTISGSN---ILPTGLHGIDLHHNPWTC 208 (767)
Q Consensus 181 N~Lt~ip~~~---~~~~~L~~L~Ls~N~l~C 208 (767)
|.++.+++.. ....+|+.|++++|.+..
T Consensus 155 n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~ 185 (680)
T 1ziw_A 155 NKIQALKSEELDIFANSSLKKLELSSNQIKE 185 (680)
T ss_dssp SCCCCBCHHHHGGGTTCEESEEECTTCCCCC
T ss_pred CcccccCHHHhhccccccccEEECCCCcccc
Confidence 9999887542 245789999999998863
No 39
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.79 E-value=2.8e-18 Score=172.73 Aligned_cols=167 Identities=25% Similarity=0.417 Sum_probs=150.8
Q ss_pred cEEEeeCCCCCCCCchhhhccCCCCccEEEccCCCCCccCcccccCCCCCCEEEccCCCCCCCCCCCCCCCCCCcEEECC
Q psy12044 52 QVLDYTGNNLKTLHNEKFQKMGLVNLQKIYLSRCRISVIDSKAFRGLTNLVDLDFSHNVLQTVPSDTFPDYPSLMKLTLS 131 (767)
Q Consensus 52 ~~L~Ls~N~L~~l~~~~f~~~~L~~L~~L~Ls~N~L~~i~p~~f~~L~~L~~L~Ls~N~Lt~l~p~~f~~l~~L~~L~Ls 131 (767)
+.++++++.++.++... ..+|+.|+|++|.|+.+.+..|.++++|++|+|++|+|+++++..|..+++|++|+|+
T Consensus 10 ~~v~c~~~~l~~~p~~~-----~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls 84 (208)
T 2o6s_A 10 TTVECYSQGRTSVPTGI-----PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLS 84 (208)
T ss_dssp TEEECCSSCCSSCCSCC-----CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CEEEecCCCccCCCCCC-----CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECC
Confidence 57888999999887554 3589999999999999988889999999999999999999999889999999999999
Q ss_pred CCcCcccccCCcCCCCCccEEeccCCCccccchhhhcCCCCCCeeeccCCccccccCCC-CCCCCcccccCCCCCCCchh
Q psy12044 132 GNPIKQIKTGAFQPLSYLVTLELSKCGIEVIEDAAFVGLDSLEWLKLDNNKITTISGSN-ILPTGLHGIDLHHNPWTCDC 210 (767)
Q Consensus 132 ~N~l~~l~~~~~~~l~~L~~L~Ls~N~L~~i~~~~~~~l~~L~~L~Ls~N~Lt~ip~~~-~~~~~L~~L~Ls~N~l~C~c 210 (767)
+|.|+++++..|..+++|+.|+|++|.|+++++..|..+++|+.|+|++|.|+.++... ..+++|+.|+|++|+|.|+|
T Consensus 85 ~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~ 164 (208)
T 2o6s_A 85 TNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTC 164 (208)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCCCT
T ss_pred CCcCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeecCC
Confidence 99999999988999999999999999999999988999999999999999999998864 45789999999999999999
Q ss_pred h-hhhhhhhhccCC
Q psy12044 211 L-LIGLRRWLESTK 223 (767)
Q Consensus 211 ~-l~~l~~~l~~~~ 223 (767)
. +.++..|.....
T Consensus 165 ~~l~~L~~~~n~~~ 178 (208)
T 2o6s_A 165 PGIRYLSEWINKHS 178 (208)
T ss_dssp TTTHHHHHHHHHCT
T ss_pred CCHHHHHHHHHhCC
Confidence 6 667766665543
No 40
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.77 E-value=5.7e-19 Score=189.83 Aligned_cols=181 Identities=23% Similarity=0.338 Sum_probs=92.1
Q ss_pred CCceecccCCeeEEEecCC--------------Ccc---ccccCC--CCCccEEEeeC-CCCCCCCchhhhccCCCCccE
Q psy12044 20 TSCICKWKGGKQTVECVNK--------------SLI---TVVEGM--DPNTQVLDYTG-NNLKTLHNEKFQKMGLVNLQK 79 (767)
Q Consensus 20 ~~C~C~~~g~~~~v~C~~~--------------~L~---~iP~~l--~~~L~~L~Ls~-N~L~~l~~~~f~~~~L~~L~~ 79 (767)
..|.|.|.| |.|... .+. .+|..+ .++|++|+|++ |.+.+..+..|.+ +++|++
T Consensus 32 ~~C~~~w~g----v~C~~~~~~~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~--l~~L~~ 105 (313)
T 1ogq_A 32 DCCNRTWLG----VLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAK--LTQLHY 105 (313)
T ss_dssp CTTTTCSTT----EEECCSSSCCCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGG--CTTCSE
T ss_pred CCCcCCCcc----eEeCCCCCCceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhc--CCCCCE
Confidence 357677987 777532 222 233333 34455555553 5555444444442 455555
Q ss_pred EEccCCCCCccCcccccCCCCCCEEEccCCCCCCCCCCCCCCCCCCcEEECCCCcCcccccCCcCCCC-CccEEeccCCC
Q psy12044 80 IYLSRCRISVIDSKAFRGLTNLVDLDFSHNVLQTVPSDTFPDYPSLMKLTLSGNPIKQIKTGAFQPLS-YLVTLELSKCG 158 (767)
Q Consensus 80 L~Ls~N~L~~i~p~~f~~L~~L~~L~Ls~N~Lt~l~p~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~-~L~~L~Ls~N~ 158 (767)
|+|++|.|++..|..|.++++|++|+|++|.|++..|..|..+++|++|+|++|.+++..+..+..+. +|+.|+|++|.
T Consensus 106 L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~ 185 (313)
T 1ogq_A 106 LYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNR 185 (313)
T ss_dssp EEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSE
T ss_pred EECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCe
Confidence 55555555555555555555555555555555554445555555555555555555544444454444 55555555555
Q ss_pred ccccchhhhcCCCCCCeeeccCCcccccc-CCCCCCCCcccccCCCCCCC
Q psy12044 159 IEVIEDAAFVGLDSLEWLKLDNNKITTIS-GSNILPTGLHGIDLHHNPWT 207 (767)
Q Consensus 159 L~~i~~~~~~~l~~L~~L~Ls~N~Lt~ip-~~~~~~~~L~~L~Ls~N~l~ 207 (767)
+++..+..|..+. |+.|+|++|.|+.+. ..+..+++|+.|+|++|.+.
T Consensus 186 l~~~~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 234 (313)
T 1ogq_A 186 LTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLA 234 (313)
T ss_dssp EEEECCGGGGGCC-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEEC
T ss_pred eeccCChHHhCCc-ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCcee
Confidence 5554444454444 555555555555322 22333445555555555543
No 41
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.77 E-value=7.9e-19 Score=203.03 Aligned_cols=203 Identities=27% Similarity=0.433 Sum_probs=166.6
Q ss_pred eEEEecCCCcccc---ccCC--CCCccEEEeeCCCCCCCCchhhhccCCCCccEEEccCCCCCccCc-ccccCCCCCCEE
Q psy12044 31 QTVECVNKSLITV---VEGM--DPNTQVLDYTGNNLKTLHNEKFQKMGLVNLQKIYLSRCRISVIDS-KAFRGLTNLVDL 104 (767)
Q Consensus 31 ~~v~C~~~~L~~i---P~~l--~~~L~~L~Ls~N~L~~l~~~~f~~~~L~~L~~L~Ls~N~L~~i~p-~~f~~L~~L~~L 104 (767)
+.++.++..+..+ |..+ .++|++|+|++|.+.++++. +. .+++|+.|+|++|.+.+..+ ..|..+++|++|
T Consensus 350 ~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~--~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L 426 (570)
T 2z63_A 350 EFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN-FL--GLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYL 426 (570)
T ss_dssp CEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEE-EE--TCTTCCEEECTTSEEESCTTSCTTTTCTTCCEE
T ss_pred CEEeCcCCccCccccccccccccCccCEEECCCCcccccccc-cc--ccCCCCEEEccCCccccccchhhhhcCCCCCEE
Confidence 3455555555443 2222 46778888888887777665 54 37888999999988888765 568899999999
Q ss_pred EccCCCCCCCCCCCCCCCCCCcEEECCCCcCc-ccccCCcCCCCCccEEeccCCCccccchhhhcCCCCCCeeeccCCcc
Q psy12044 105 DFSHNVLQTVPSDTFPDYPSLMKLTLSGNPIK-QIKTGAFQPLSYLVTLELSKCGIEVIEDAAFVGLDSLEWLKLDNNKI 183 (767)
Q Consensus 105 ~Ls~N~Lt~l~p~~f~~l~~L~~L~Ls~N~l~-~l~~~~~~~l~~L~~L~Ls~N~L~~i~~~~~~~l~~L~~L~Ls~N~L 183 (767)
+|++|.+++..+..|..+++|+.|+|++|.++ +..+..|..+++|+.|+|++|.++++.+..|..+++|+.|+|++|+|
T Consensus 427 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l 506 (570)
T 2z63_A 427 DISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQL 506 (570)
T ss_dssp ECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred eCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcC
Confidence 99999999999899999999999999999998 56677899999999999999999999898999999999999999999
Q ss_pred ccccCCC-CCCCCcccccCCCCCCCchhhhhhhh-hhhccCCCCCccCCCCCCCC
Q psy12044 184 TTISGSN-ILPTGLHGIDLHHNPWTCDCLLIGLR-RWLESTKTPMAIDPICSVPP 236 (767)
Q Consensus 184 t~ip~~~-~~~~~L~~L~Ls~N~l~C~c~l~~l~-~~l~~~~~~~~~~~~C~~p~ 236 (767)
+.+++.. ..+++|+.|++++|+|.|+|...|+. .|+............|..|.
T Consensus 507 ~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~wl~~~~~~~~~~~~C~~~~ 561 (570)
T 2z63_A 507 KSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSRWLNKNSQKEQGSAKCSGSG 561 (570)
T ss_dssp SCCCTTTTTTCTTCCEEECCSSCBCCCTTTTHHHHHHHHHTGGGEESCCBBTTTC
T ss_pred CCCCHHHhhcccCCcEEEecCCcccCCCcchHHHHHHHHhccccCCCchhhCCCC
Confidence 9988764 46789999999999999999988887 99887654444444887763
No 42
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.77 E-value=1.6e-18 Score=200.50 Aligned_cols=184 Identities=26% Similarity=0.371 Sum_probs=164.8
Q ss_pred CceecccCCeeEEEecCCCccccccCCCCCccEEEeeCCCCCCCCchhhhccCCCCccEEEccCCCCCccCcccccCCCC
Q psy12044 21 SCICKWKGGKQTVECVNKSLITVVEGMDPNTQVLDYTGNNLKTLHNEKFQKMGLVNLQKIYLSRCRISVIDSKAFRGLTN 100 (767)
Q Consensus 21 ~C~C~~~g~~~~v~C~~~~L~~iP~~l~~~L~~L~Ls~N~L~~l~~~~f~~~~L~~L~~L~Ls~N~L~~i~p~~f~~L~~ 100 (767)
.|.|... ...++|.+.++..+|..++++++.|+|++|.|+++.+..|.. +++|+.|+|++|.|+++.+.+|.++++
T Consensus 2 ~c~~~~~--~~~~~c~~~~l~~ip~~l~~~l~~L~Ls~n~l~~~~~~~~~~--l~~L~~L~Ls~n~i~~i~~~~~~~l~~ 77 (570)
T 2z63_A 2 PCVEVVP--NITYQCMELNFYKIPDNLPFSTKNLDLSFNPLRHLGSYSFFS--FPELQVLDLSRCEIQTIEDGAYQSLSH 77 (570)
T ss_dssp CSEEEET--TTEEECCSSCCSSCCSSSCSSCCEEECCSCCCCEECTTTTTT--CSSCCEEECTTCCCCEECTTTTTTCTT
T ss_pred CccccCC--CcEEEeCCCCccccCCCccccccEEEccCCccCccChhHhhC--CCCceEEECCCCcCCccCcccccCchh
Confidence 5777643 367999999999999999999999999999999999988884 999999999999999999999999999
Q ss_pred CCEEEccCCCCCCCCCCCCCCCCCCcEEECCCCcCcccccCCcCCCCCccEEeccCCCcccc-chhhhcCCCCCCeeecc
Q psy12044 101 LVDLDFSHNVLQTVPSDTFPDYPSLMKLTLSGNPIKQIKTGAFQPLSYLVTLELSKCGIEVI-EDAAFVGLDSLEWLKLD 179 (767)
Q Consensus 101 L~~L~Ls~N~Lt~l~p~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~L~~i-~~~~~~~l~~L~~L~Ls 179 (767)
|++|+|++|.++.+++..|..+++|++|+|++|.++.+++..|..+++|+.|+|++|.++++ .|..|..+++|+.|+++
T Consensus 78 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~ 157 (570)
T 2z63_A 78 LSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLS 157 (570)
T ss_dssp CCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECT
T ss_pred CCEEeCcCCcCCccCHhhhcCccccccccccccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCc
Confidence 99999999999999999999999999999999999999888899999999999999999985 47789999999999999
Q ss_pred CCccccccCCC-CCCCCc----ccccCCCCCCCc
Q psy12044 180 NNKITTISGSN-ILPTGL----HGIDLHHNPWTC 208 (767)
Q Consensus 180 ~N~Lt~ip~~~-~~~~~L----~~L~Ls~N~l~C 208 (767)
+|.++.+++.. ..+.+| ..|++++|.+..
T Consensus 158 ~n~l~~~~~~~~~~l~~L~~~~~~L~l~~n~l~~ 191 (570)
T 2z63_A 158 SNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNF 191 (570)
T ss_dssp TSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCE
T ss_pred CCccceecHHHccchhccchhhhhcccCCCCcee
Confidence 99999876542 233444 678899998763
No 43
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.76 E-value=1.3e-18 Score=200.47 Aligned_cols=181 Identities=28% Similarity=0.390 Sum_probs=161.7
Q ss_pred ceecccCCeeEEEecCCCccccccCCCCCccEEEeeCCCCCCCCchhhhccCCCCccEEEccCCCCCccCcccccCCCCC
Q psy12044 22 CICKWKGGKQTVECVNKSLITVVEGMDPNTQVLDYTGNNLKTLHNEKFQKMGLVNLQKIYLSRCRISVIDSKAFRGLTNL 101 (767)
Q Consensus 22 C~C~~~g~~~~v~C~~~~L~~iP~~l~~~L~~L~Ls~N~L~~l~~~~f~~~~L~~L~~L~Ls~N~L~~i~p~~f~~L~~L 101 (767)
|.|.|.+ +++|++++++.+|..+++++++|+|++|.|+++.+..|.. +++|++|+|++|.|+++.+.+|.++++|
T Consensus 2 ~~C~~~~---~c~~~~~~l~~ip~~~~~~L~~L~Ls~n~l~~~~~~~~~~--l~~L~~L~Ls~n~i~~~~~~~~~~l~~L 76 (549)
T 2z81_A 2 LSCDASG---VCDGRSRSFTSIPSGLTAAMKSLDLSFNKITYIGHGDLRA--CANLQVLILKSSRINTIEGDAFYSLGSL 76 (549)
T ss_dssp CEECTTS---EEECTTSCCSSCCSCCCTTCCEEECCSSCCCEECSSTTSS--CTTCCEEECTTSCCCEECTTTTTTCTTC
T ss_pred ccCCCCc---eEECCCCccccccccCCCCccEEECcCCccCccChhhhhc--CCcccEEECCCCCcCccChhhccccccC
Confidence 4566654 3577889999999999999999999999999999888874 8999999999999999999999999999
Q ss_pred CEEEccCCCCCCCCCCCCCCCCCCcEEECCCCcCccc-ccCCcCCCCCccEEeccCCC-ccccchhhhcCCCCCCeeecc
Q psy12044 102 VDLDFSHNVLQTVPSDTFPDYPSLMKLTLSGNPIKQI-KTGAFQPLSYLVTLELSKCG-IEVIEDAAFVGLDSLEWLKLD 179 (767)
Q Consensus 102 ~~L~Ls~N~Lt~l~p~~f~~l~~L~~L~Ls~N~l~~l-~~~~~~~l~~L~~L~Ls~N~-L~~i~~~~~~~l~~L~~L~Ls 179 (767)
++|+|++|.|+++++..|..+++|++|+|++|.++++ .+..|..+++|+.|+|++|. +..+++..|..+++|+.|+|+
T Consensus 77 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~ 156 (549)
T 2z81_A 77 EHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIK 156 (549)
T ss_dssp CEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEE
T ss_pred CEEECCCCccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeecc
Confidence 9999999999999988899999999999999999975 35678999999999999998 677777789999999999999
Q ss_pred CCcccc-ccCCCCCCCCcccccCCCCCCC
Q psy12044 180 NNKITT-ISGSNILPTGLHGIDLHHNPWT 207 (767)
Q Consensus 180 ~N~Lt~-ip~~~~~~~~L~~L~Ls~N~l~ 207 (767)
+|.++. ++..+....+|+.|++++|.+.
T Consensus 157 ~n~l~~~~~~~l~~l~~L~~L~l~~n~~~ 185 (549)
T 2z81_A 157 ALSLRNYQSQSLKSIRDIHHLTLHLSESA 185 (549)
T ss_dssp ETTCCEECTTTTTTCSEEEEEEEECSBST
T ss_pred CCcccccChhhhhccccCceEecccCccc
Confidence 999996 4555666788999999998865
No 44
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.75 E-value=6.4e-18 Score=194.78 Aligned_cols=201 Identities=24% Similarity=0.301 Sum_probs=154.2
Q ss_pred eeEEEecCCCccccccCC---CCCccEEEeeCCCCCCCCch---hhhccCCCCccEEEccCCCCCccCc--ccccCCCCC
Q psy12044 30 KQTVECVNKSLITVVEGM---DPNTQVLDYTGNNLKTLHNE---KFQKMGLVNLQKIYLSRCRISVIDS--KAFRGLTNL 101 (767)
Q Consensus 30 ~~~v~C~~~~L~~iP~~l---~~~L~~L~Ls~N~L~~l~~~---~f~~~~L~~L~~L~Ls~N~L~~i~p--~~f~~L~~L 101 (767)
-+.++.++..+..+|..+ .++|+.|+|++|.+++..+. .+. .+++|+.|+|++|.|+++.+ ..|..+++|
T Consensus 312 L~~L~l~~n~l~~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~--~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L 389 (549)
T 2z81_A 312 VKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKG--AWPSLQTLVLSQNHLRSMQKTGEILLTLKNL 389 (549)
T ss_dssp CCEEEEESSCCCCCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTT--SSTTCCEEECTTSCCCCHHHHHHHGGGCTTC
T ss_pred ceEEEeccCccccCCHHHHhcCccccEEEccCCccccccccchhhhh--ccccCcEEEccCCcccccccchhhhhcCCCC
Confidence 355677777777787655 57888888888888875432 233 37788888888888887643 457788888
Q ss_pred CEEEccCCCCCCCCCCCCCCCCCCcEEECCCCcCcccccCC-----------------cCCCCCccEEeccCCCccccch
Q psy12044 102 VDLDFSHNVLQTVPSDTFPDYPSLMKLTLSGNPIKQIKTGA-----------------FQPLSYLVTLELSKCGIEVIED 164 (767)
Q Consensus 102 ~~L~Ls~N~Lt~l~p~~f~~l~~L~~L~Ls~N~l~~l~~~~-----------------~~~l~~L~~L~Ls~N~L~~i~~ 164 (767)
++|+|++|+|+.++ ..+..+++|+.|+|++|.++.++... +..+++|+.|+|++|+|+.++.
T Consensus 390 ~~L~Ls~N~l~~lp-~~~~~~~~L~~L~Ls~N~l~~l~~~~~~~L~~L~Ls~N~l~~~~~~l~~L~~L~Ls~N~l~~ip~ 468 (549)
T 2z81_A 390 TSLDISRNTFHPMP-DSCQWPEKMRFLNLSSTGIRVVKTCIPQTLEVLDVSNNNLDSFSLFLPRLQELYISRNKLKTLPD 468 (549)
T ss_dssp CEEECTTCCCCCCC-SCCCCCTTCCEEECTTSCCSCCCTTSCTTCSEEECCSSCCSCCCCCCTTCCEEECCSSCCSSCCC
T ss_pred CEEECCCCCCccCC-hhhcccccccEEECCCCCcccccchhcCCceEEECCCCChhhhcccCChhcEEECCCCccCcCCC
Confidence 88888888888654 45677777777777777776554321 1367889999999999997765
Q ss_pred hhhcCCCCCCeeeccCCccccccCC-CCCCCCcccccCCCCCCCchhh-hhhhhhhhccCCCCCccCCCCCCC
Q psy12044 165 AAFVGLDSLEWLKLDNNKITTISGS-NILPTGLHGIDLHHNPWTCDCL-LIGLRRWLESTKTPMAIDPICSVP 235 (767)
Q Consensus 165 ~~~~~l~~L~~L~Ls~N~Lt~ip~~-~~~~~~L~~L~Ls~N~l~C~c~-l~~l~~~l~~~~~~~~~~~~C~~p 235 (767)
+..+++|+.|+|++|+|+++++. +..+++|+.|+|++|+|.|+|. +.|+..|+............|..|
T Consensus 469 --~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~~~~l~~~l~~~~~~~~~~~~C~~~ 539 (549)
T 2z81_A 469 --ASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSRWLNKNSQKEQGSAKCSGS 539 (549)
T ss_dssp --GGGCTTCCEEECCSSCCCCCCTTGGGGCTTCCEEECCSSCBCCCHHHHHHHHHHHHHCTTTEESCCBBTTT
T ss_pred --cccCccCCEEecCCCccCCcCHHHHhcCcccCEEEecCCCccCCCccHHHHHHHHHhcccccCCCCeECCC
Confidence 45689999999999999988876 4467899999999999999999 577888998776655677788876
No 45
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.75 E-value=3.2e-17 Score=170.19 Aligned_cols=153 Identities=25% Similarity=0.379 Sum_probs=142.6
Q ss_pred CccEEEeeCCCCCCCCchhhhccCCCCccEEEccCCCCCccCcccccCCCCCCEEEccCCCCCCCCCCCCCCCCCCcEEE
Q psy12044 50 NTQVLDYTGNNLKTLHNEKFQKMGLVNLQKIYLSRCRISVIDSKAFRGLTNLVDLDFSHNVLQTVPSDTFPDYPSLMKLT 129 (767)
Q Consensus 50 ~L~~L~Ls~N~L~~l~~~~f~~~~L~~L~~L~Ls~N~L~~i~p~~f~~L~~L~~L~Ls~N~Lt~l~p~~f~~l~~L~~L~ 129 (767)
+.+.++++++.++.++.... .+|+.|+|++|.|+++.+..|.++++|++|+|++|.|+++++..|..+++|+.|+
T Consensus 15 ~~~~l~~~~~~l~~~p~~~~-----~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 89 (251)
T 3m19_A 15 GKKEVDCQGKSLDSVPSGIP-----ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLG 89 (251)
T ss_dssp GGTEEECTTCCCSSCCSCCC-----TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCeEEecCCCCccccCCCCC-----CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEE
Confidence 56789999999999886543 5899999999999999999999999999999999999999999999999999999
Q ss_pred CCCCcCcccccCCcCCCCCccEEeccCCCccccchhhhcCCCCCCeeeccCCccccccCC-CCCCCCcccccCCCCCCC
Q psy12044 130 LSGNPIKQIKTGAFQPLSYLVTLELSKCGIEVIEDAAFVGLDSLEWLKLDNNKITTISGS-NILPTGLHGIDLHHNPWT 207 (767)
Q Consensus 130 Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~L~~i~~~~~~~l~~L~~L~Ls~N~Lt~ip~~-~~~~~~L~~L~Ls~N~l~ 207 (767)
|++|.|+.+++..|..+++|+.|+|++|.|+++++..|..+++|+.|+|++|+|+.++.. +..+++|+.|+|++|.+.
T Consensus 90 L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 168 (251)
T 3m19_A 90 LANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQ 168 (251)
T ss_dssp CTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCS
T ss_pred CCCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCC
Confidence 999999999999999999999999999999999998899999999999999999999885 446789999999999987
No 46
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.73 E-value=3.2e-17 Score=176.95 Aligned_cols=172 Identities=23% Similarity=0.354 Sum_probs=133.4
Q ss_pred eEEEecCCCccccccCCCCCccEEEeeCCCCCCCCchhhhccCCCCccEEEccCCCCCc--cCcccccCCCCCCEEEccC
Q psy12044 31 QTVECVNKSLITVVEGMDPNTQVLDYTGNNLKTLHNEKFQKMGLVNLQKIYLSRCRISV--IDSKAFRGLTNLVDLDFSH 108 (767)
Q Consensus 31 ~~v~C~~~~L~~iP~~l~~~L~~L~Ls~N~L~~l~~~~f~~~~L~~L~~L~Ls~N~L~~--i~p~~f~~L~~L~~L~Ls~ 108 (767)
+.++.++..+..+|..+.++|++|++++|.|+++.+..|.. +++|+.|+|++|.+.. ..+..|.++++|++|+|++
T Consensus 103 ~~L~Ls~n~l~~l~~~~~~~L~~L~l~~n~l~~~~~~~~~~--l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~ 180 (330)
T 1xku_A 103 ERLYLSKNQLKELPEKMPKTLQELRVHENEITKVRKSVFNG--LNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIAD 180 (330)
T ss_dssp CEEECCSSCCSBCCSSCCTTCCEEECCSSCCCBBCHHHHTT--CTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCS
T ss_pred CEEECCCCcCCccChhhcccccEEECCCCcccccCHhHhcC--CccccEEECCCCcCCccCcChhhccCCCCcCEEECCC
Confidence 45666666777777777777777777777777777777763 7788888888887754 5667777888888888888
Q ss_pred CCCCCCCCCCCCCCCCCcEEECCCCcCcccccCCcCCCCCccEEeccCCCccccchhhhcCCCCCCeeeccCCccccccC
Q psy12044 109 NVLQTVPSDTFPDYPSLMKLTLSGNPIKQIKTGAFQPLSYLVTLELSKCGIEVIEDAAFVGLDSLEWLKLDNNKITTISG 188 (767)
Q Consensus 109 N~Lt~l~p~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~L~~i~~~~~~~l~~L~~L~Ls~N~Lt~ip~ 188 (767)
|.++.++...+ ++|+.|+|++|.++++.+..|..+++|+.|+|++|.|+++.+..|..+++|+.|+|++|.|+.+|.
T Consensus 181 n~l~~l~~~~~---~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~lp~ 257 (330)
T 1xku_A 181 TNITTIPQGLP---PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPG 257 (330)
T ss_dssp SCCCSCCSSCC---TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCSSCCT
T ss_pred CccccCCcccc---ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCccCCh
Confidence 88877664432 678888888888888877778888888888888888888877778888888888888888888887
Q ss_pred CCCCCCCcccccCCCCCCC
Q psy12044 189 SNILPTGLHGIDLHHNPWT 207 (767)
Q Consensus 189 ~~~~~~~L~~L~Ls~N~l~ 207 (767)
.+..+++|+.|+|++|++.
T Consensus 258 ~l~~l~~L~~L~l~~N~i~ 276 (330)
T 1xku_A 258 GLADHKYIQVVYLHNNNIS 276 (330)
T ss_dssp TTTTCSSCCEEECCSSCCC
T ss_pred hhccCCCcCEEECCCCcCC
Confidence 7777788888888888876
No 47
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.73 E-value=5.3e-18 Score=182.23 Aligned_cols=175 Identities=19% Similarity=0.151 Sum_probs=140.8
Q ss_pred eeEEEecCCCcc-ccccCC--CCCccEEEeeCCCCCCCCchhhhccCCCCccEEEccCCCCCccCcccccCCC-CCCEEE
Q psy12044 30 KQTVECVNKSLI-TVVEGM--DPNTQVLDYTGNNLKTLHNEKFQKMGLVNLQKIYLSRCRISVIDSKAFRGLT-NLVDLD 105 (767)
Q Consensus 30 ~~~v~C~~~~L~-~iP~~l--~~~L~~L~Ls~N~L~~l~~~~f~~~~L~~L~~L~Ls~N~L~~i~p~~f~~L~-~L~~L~ 105 (767)
-+.++.++..+. .+|..+ .++|++|+|++|.|++..+..|.. +++|+.|+|++|.|++..|..|..+. +|++|+
T Consensus 103 L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~--l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~ 180 (313)
T 1ogq_A 103 LHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISS--LPNLVGITFDGNRISGAIPDSYGSFSKLFTSMT 180 (313)
T ss_dssp CSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGG--CTTCCEEECCSSCCEEECCGGGGCCCTTCCEEE
T ss_pred CCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhc--CCCCCeEECcCCcccCcCCHHHhhhhhcCcEEE
Confidence 356777777776 666655 578999999999999877777774 88999999999999988888888887 899999
Q ss_pred ccCCCCCCCCCCCCCCCCCCcEEECCCCcCcccccCCcCCCCCccEEeccCCCccccchhhhcCCCCCCeeeccCCccc-
Q psy12044 106 FSHNVLQTVPSDTFPDYPSLMKLTLSGNPIKQIKTGAFQPLSYLVTLELSKCGIEVIEDAAFVGLDSLEWLKLDNNKIT- 184 (767)
Q Consensus 106 Ls~N~Lt~l~p~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~L~~i~~~~~~~l~~L~~L~Ls~N~Lt- 184 (767)
|++|.+++..|..|..+. |+.|+|++|.+++..+..|..+++|+.|+|++|.+++.++. +..+++|+.|+|++|+|+
T Consensus 181 L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~ 258 (313)
T 1ogq_A 181 ISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYG 258 (313)
T ss_dssp CCSSEEEEECCGGGGGCC-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEE
T ss_pred CcCCeeeccCChHHhCCc-ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccC
Confidence 999988887777787776 88888888888888777888888888888888888877665 677788888888888887
Q ss_pred cccCCCCCCCCcccccCCCCCCCc
Q psy12044 185 TISGSNILPTGLHGIDLHHNPWTC 208 (767)
Q Consensus 185 ~ip~~~~~~~~L~~L~Ls~N~l~C 208 (767)
.+|..+..+++|+.|+|++|++..
T Consensus 259 ~~p~~l~~l~~L~~L~Ls~N~l~~ 282 (313)
T 1ogq_A 259 TLPQGLTQLKFLHSLNVSFNNLCG 282 (313)
T ss_dssp CCCGGGGGCTTCCEEECCSSEEEE
T ss_pred cCChHHhcCcCCCEEECcCCcccc
Confidence 556556666778888888887764
No 48
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.73 E-value=4e-17 Score=171.35 Aligned_cols=167 Identities=26% Similarity=0.421 Sum_probs=149.4
Q ss_pred ceecccCCeeEEEecCCCccccccCCCCCccEEEeeCCCCCCCCchhhhccCCCCccEEEccCCCCCccCcccccCCCCC
Q psy12044 22 CICKWKGGKQTVECVNKSLITVVEGMDPNTQVLDYTGNNLKTLHNEKFQKMGLVNLQKIYLSRCRISVIDSKAFRGLTNL 101 (767)
Q Consensus 22 C~C~~~g~~~~v~C~~~~L~~iP~~l~~~L~~L~Ls~N~L~~l~~~~f~~~~L~~L~~L~Ls~N~L~~i~p~~f~~L~~L 101 (767)
..|.|.+ ....|.. +++.++++++.|+.++... ..+|+.|+|++|.|+.+.+..|.++++|
T Consensus 3 ~~C~~~~--~~C~c~~------------~~~~l~~~~~~l~~ip~~~-----~~~l~~L~l~~n~l~~~~~~~~~~l~~L 63 (270)
T 2o6q_A 3 ALCKKDG--GVCSCNN------------NKNSVDCSSKKLTAIPSNI-----PADTKKLDLQSNKLSSLPSKAFHRLTKL 63 (270)
T ss_dssp CCBGGGT--CSBEEET------------TTTEEECTTSCCSSCCSCC-----CTTCSEEECCSSCCSCCCTTSSSSCTTC
T ss_pred ccCCCCC--CCCEeCC------------CCCEEEccCCCCCccCCCC-----CCCCCEEECcCCCCCeeCHHHhcCCCCC
Confidence 4588987 2345532 4678999999999987643 2579999999999999988899999999
Q ss_pred CEEEccCCCCCCCCCCCCCCCCCCcEEECCCCcCcccccCCcCCCCCccEEeccCCCccccchhhhcCCCCCCeeeccCC
Q psy12044 102 VDLDFSHNVLQTVPSDTFPDYPSLMKLTLSGNPIKQIKTGAFQPLSYLVTLELSKCGIEVIEDAAFVGLDSLEWLKLDNN 181 (767)
Q Consensus 102 ~~L~Ls~N~Lt~l~p~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~L~~i~~~~~~~l~~L~~L~Ls~N 181 (767)
++|+|++|.|+.+++..|..+++|+.|+|++|.++.+++..|..+++|+.|+|++|.|+.+++..|..+++|+.|+|++|
T Consensus 64 ~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n 143 (270)
T 2o6q_A 64 RLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYN 143 (270)
T ss_dssp CEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEECCCCccCeeChhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCC
Confidence 99999999999999999999999999999999999999989999999999999999999999999999999999999999
Q ss_pred ccccccCCC-CCCCCcccccCCCCCCC
Q psy12044 182 KITTISGSN-ILPTGLHGIDLHHNPWT 207 (767)
Q Consensus 182 ~Lt~ip~~~-~~~~~L~~L~Ls~N~l~ 207 (767)
.|+.++... ..+++|+.|+|++|.+.
T Consensus 144 ~l~~~~~~~~~~l~~L~~L~L~~n~l~ 170 (270)
T 2o6q_A 144 ELQSLPKGVFDKLTSLKELRLYNNQLK 170 (270)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCS
T ss_pred cCCccCHhHccCCcccceeEecCCcCc
Confidence 999998774 45789999999999886
No 49
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.73 E-value=1.2e-17 Score=203.04 Aligned_cols=180 Identities=25% Similarity=0.246 Sum_probs=153.7
Q ss_pred CceecccCCeeEEEecCCCccccccCCCCCccEEEeeCCCCCCCCchhhhccCCCCccEEEccCCCCC-ccCcccccCCC
Q psy12044 21 SCICKWKGGKQTVECVNKSLITVVEGMDPNTQVLDYTGNNLKTLHNEKFQKMGLVNLQKIYLSRCRIS-VIDSKAFRGLT 99 (767)
Q Consensus 21 ~C~C~~~g~~~~v~C~~~~L~~iP~~l~~~L~~L~Ls~N~L~~l~~~~f~~~~L~~L~~L~Ls~N~L~-~i~p~~f~~L~ 99 (767)
.|.|. ...++|++.++..+|. ++++++.|+|++|.|+++.+..|.+ +++|+.|+|++|.+. .+.+.+|.+++
T Consensus 1 ~C~~~----~~~~dcs~~~L~~vP~-lp~~l~~LdLs~N~i~~i~~~~~~~--l~~L~~LdLs~n~~~~~i~~~~f~~L~ 73 (844)
T 3j0a_A 1 SCSFD----GRIAFYRFCNLTQVPQ-VLNTTERLLLSFNYIRTVTASSFPF--LEQLQLLELGSQYTPLTIDKEAFRNLP 73 (844)
T ss_dssp CCBTT----TEEEEESCCCSSCCCS-SCTTCCEEEEESCCCCEECSSSCSS--CCSCSEEEECTTCCCCEECTTTTSSCT
T ss_pred CceEe----ceEEEccCCCCCCCCC-CCCCcCEEECCCCcCCccChhHCcc--cccCeEEeCCCCCCccccCHHHhcCCC
Confidence 47776 3689999999999999 9999999999999999999988985 999999999999554 45588999999
Q ss_pred CCCEEEccCCCCCCCCCCCCCCCCCCcEEECCCCcCcccccC--CcCCCCCccEEeccCCCccccch-hhhcCCCCCCee
Q psy12044 100 NLVDLDFSHNVLQTVPSDTFPDYPSLMKLTLSGNPIKQIKTG--AFQPLSYLVTLELSKCGIEVIED-AAFVGLDSLEWL 176 (767)
Q Consensus 100 ~L~~L~Ls~N~Lt~l~p~~f~~l~~L~~L~Ls~N~l~~l~~~--~~~~l~~L~~L~Ls~N~L~~i~~-~~~~~l~~L~~L 176 (767)
+|++|+|++|.|+++.|..|..+++|+.|+|++|.+++..+. .|..+++|+.|+|++|.++++.+ ..|..+++|+.|
T Consensus 74 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L 153 (844)
T 3j0a_A 74 NLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSI 153 (844)
T ss_dssp TCCEEECTTCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEE
T ss_pred CCCEEECCCCcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEE
Confidence 999999999999999999999999999999999999985443 48999999999999999998865 578999999999
Q ss_pred eccCCccccccCCCC-CC--CCcccccCCCCCCC
Q psy12044 177 KLDNNKITTISGSNI-LP--TGLHGIDLHHNPWT 207 (767)
Q Consensus 177 ~Ls~N~Lt~ip~~~~-~~--~~L~~L~Ls~N~l~ 207 (767)
+|++|.++.+.+..+ .. .+|+.|+|++|.+.
T Consensus 154 ~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~n~l~ 187 (844)
T 3j0a_A 154 DFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLY 187 (844)
T ss_dssp EEESSCCCCCCSGGGHHHHHCSSCCCEECCSBSC
T ss_pred ECCCCcCCeeCHHHcccccCCccceEECCCCccc
Confidence 999999986644322 11 45666666666654
No 50
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.72 E-value=9.1e-18 Score=180.56 Aligned_cols=175 Identities=23% Similarity=0.313 Sum_probs=143.2
Q ss_pred EEEecCCCccccccCCCCCccEEEeeCCCCCCCCchhhhccCCCCccEEEccCCCCCccCcccccCCCCCCEEEccCCCC
Q psy12044 32 TVECVNKSLITVVEGMDPNTQVLDYTGNNLKTLHNEKFQKMGLVNLQKIYLSRCRISVIDSKAFRGLTNLVDLDFSHNVL 111 (767)
Q Consensus 32 ~v~C~~~~L~~iP~~l~~~L~~L~Ls~N~L~~l~~~~f~~~~L~~L~~L~Ls~N~L~~i~p~~f~~L~~L~~L~Ls~N~L 111 (767)
.++.++..+..++.. ++|++|++++|.|+++.... +++|+.|+|++|.|+++.+..|..+++|++|+|++|.|
T Consensus 84 ~L~Ls~n~l~~l~~~--~~L~~L~l~~n~l~~~~~~~-----~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l 156 (317)
T 3o53_A 84 TLDLNNNYVQELLVG--PSIETLHAANNNISRVSCSR-----GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEI 156 (317)
T ss_dssp EEECCSSEEEEEEEC--TTCCEEECCSSCCSEEEECC-----CSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCC
T ss_pred EEECcCCccccccCC--CCcCEEECCCCccCCcCccc-----cCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCC
Confidence 344444444444432 55666666666666655433 56899999999999999888899999999999999999
Q ss_pred CCCCCCCC-CCCCCCcEEECCCCcCcccccCCcCCCCCccEEeccCCCccccchhhhcCCCCCCeeeccCCccccccCCC
Q psy12044 112 QTVPSDTF-PDYPSLMKLTLSGNPIKQIKTGAFQPLSYLVTLELSKCGIEVIEDAAFVGLDSLEWLKLDNNKITTISGSN 190 (767)
Q Consensus 112 t~l~p~~f-~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~L~~i~~~~~~~l~~L~~L~Ls~N~Lt~ip~~~ 190 (767)
+++.+..+ ..+++|+.|+|++|.|+.++.. ..+++|+.|+|++|.|+++++. |..+++|+.|+|++|+|+.++..+
T Consensus 157 ~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~--~~l~~L~~L~Ls~N~l~~l~~~-~~~l~~L~~L~L~~N~l~~l~~~~ 233 (317)
T 3o53_A 157 DTVNFAELAASSDTLEHLNLQYNFIYDVKGQ--VVFAKLKTLDLSSNKLAFMGPE-FQSAAGVTWISLRNNKLVLIEKAL 233 (317)
T ss_dssp CEEEGGGGGGGTTTCCEEECTTSCCCEEECC--CCCTTCCEEECCSSCCCEECGG-GGGGTTCSEEECTTSCCCEECTTC
T ss_pred CcccHHHHhhccCcCCEEECCCCcCcccccc--cccccCCEEECCCCcCCcchhh-hcccCcccEEECcCCcccchhhHh
Confidence 99877766 4789999999999999988543 3589999999999999998775 888999999999999999999888
Q ss_pred CCCCCcccccCCCCCCCchhhhhhhh
Q psy12044 191 ILPTGLHGIDLHHNPWTCDCLLIGLR 216 (767)
Q Consensus 191 ~~~~~L~~L~Ls~N~l~C~c~l~~l~ 216 (767)
..+++|+.|+|++|+|.|+|...++.
T Consensus 234 ~~l~~L~~L~l~~N~~~~~~~~~~~~ 259 (317)
T 3o53_A 234 RFSQNLEHFDLRGNGFHCGTLRDFFS 259 (317)
T ss_dssp CCCTTCCEEECTTCCCBHHHHHHHHH
T ss_pred hcCCCCCEEEccCCCccCcCHHHHHh
Confidence 78899999999999999987665553
No 51
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.72 E-value=9.7e-18 Score=194.48 Aligned_cols=162 Identities=25% Similarity=0.306 Sum_probs=133.6
Q ss_pred HhhhccCCCCCceecccCCeeEEEecCCCccccccCCCCCccEEEeeCCCCCCCCchhhhccCCCCccEEEccCCCCCcc
Q psy12044 11 IIKIVSACPTSCICKWKGGKQTVECVNKSLITVVEGMDPNTQVLDYTGNNLKTLHNEKFQKMGLVNLQKIYLSRCRISVI 90 (767)
Q Consensus 11 ~~~~~~~CP~~C~C~~~g~~~~v~C~~~~L~~iP~~l~~~L~~L~Ls~N~L~~l~~~~f~~~~L~~L~~L~Ls~N~L~~i 90 (767)
++....+|+..|.|.. ...++|++.++..+|..+++++++|+|++|.|+++++..|.. +++|+.|+|++|.|+++
T Consensus 17 ~~~~~~~~~~~~~~~~---~~~l~ls~~~L~~ip~~~~~~L~~L~Ls~N~i~~~~~~~~~~--l~~L~~L~Ls~N~l~~~ 91 (562)
T 3a79_B 17 ALALIVGSMTPFSNEL---ESMVDYSNRNLTHVPKDLPPRTKALSLSQNSISELRMPDISF--LSELRVLRLSHNRIRSL 91 (562)
T ss_dssp -------------------CCEEECTTSCCCSCCTTSCTTCCEEECCSSCCCCCCGGGTTT--CTTCCEEECCSCCCCEE
T ss_pred HHHHHhccccccccCC---CcEEEcCCCCCccCCCCCCCCcCEEECCCCCccccChhhhcc--CCCccEEECCCCCCCcC
Confidence 3455567777777863 378999999999999999999999999999999999988984 89999999999999999
Q ss_pred CcccccCCCCCCEEEccCCCCCCCCCCCCCCCCCCcEEECCCCcCcccc-cCCcCCCCCccEEeccCCCccccchhhhcC
Q psy12044 91 DSKAFRGLTNLVDLDFSHNVLQTVPSDTFPDYPSLMKLTLSGNPIKQIK-TGAFQPLSYLVTLELSKCGIEVIEDAAFVG 169 (767)
Q Consensus 91 ~p~~f~~L~~L~~L~Ls~N~Lt~l~p~~f~~l~~L~~L~Ls~N~l~~l~-~~~~~~l~~L~~L~Ls~N~L~~i~~~~~~~ 169 (767)
.|.+|.++++|++|+|++|.|+.++.. .+++|+.|+|++|.++++. +..|.++++|+.|+|++|.|+... +..
T Consensus 92 ~~~~~~~l~~L~~L~Ls~N~l~~lp~~---~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~~---~~~ 165 (562)
T 3a79_B 92 DFHVFLFNQDLEYLDVSHNRLQNISCC---PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLD---LLP 165 (562)
T ss_dssp CTTTTTTCTTCCEEECTTSCCCEECSC---CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTTT---TGG
T ss_pred CHHHhCCCCCCCEEECCCCcCCccCcc---ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccCc---hhh
Confidence 999999999999999999999987755 7999999999999999976 478999999999999999998753 455
Q ss_pred CCCC--CeeeccCCcc
Q psy12044 170 LDSL--EWLKLDNNKI 183 (767)
Q Consensus 170 l~~L--~~L~Ls~N~L 183 (767)
+.+| +.|+|++|.+
T Consensus 166 l~~L~L~~L~L~~n~l 181 (562)
T 3a79_B 166 VAHLHLSCILLDLVSY 181 (562)
T ss_dssp GTTSCEEEEEEEESSC
T ss_pred hhhceeeEEEeecccc
Confidence 5555 9999999998
No 52
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.72 E-value=3.1e-17 Score=168.81 Aligned_cols=173 Identities=25% Similarity=0.305 Sum_probs=156.1
Q ss_pred eeEEEecCCCccccccCC---CCCccEEEeeCCC-CCCCCchhhhccCCCCccEEEccC-CCCCccCcccccCCCCCCEE
Q psy12044 30 KQTVECVNKSLITVVEGM---DPNTQVLDYTGNN-LKTLHNEKFQKMGLVNLQKIYLSR-CRISVIDSKAFRGLTNLVDL 104 (767)
Q Consensus 30 ~~~v~C~~~~L~~iP~~l---~~~L~~L~Ls~N~-L~~l~~~~f~~~~L~~L~~L~Ls~-N~L~~i~p~~f~~L~~L~~L 104 (767)
-+.++.++..+..+|... .++|++|+|++|. ++.+++..|.. +++|+.|+|++ |.|+.+.+..|.++++|++|
T Consensus 33 l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~--l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L 110 (239)
T 2xwt_C 33 TQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYN--LSKVTHIEIRNTRNLTYIDPDALKELPLLKFL 110 (239)
T ss_dssp CCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEES--CTTCCEEEEEEETTCCEECTTSEECCTTCCEE
T ss_pred ccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCC--CcCCcEEECCCCCCeeEcCHHHhCCCCCCCEE
Confidence 567899999999998743 5789999999997 99999988874 89999999999 99999999999999999999
Q ss_pred EccCCCCCCCCCCCCCCCCCCc---EEECCCC-cCcccccCCcCCCCCcc-EEeccCCCccccchhhhcCCCCCCeeecc
Q psy12044 105 DFSHNVLQTVPSDTFPDYPSLM---KLTLSGN-PIKQIKTGAFQPLSYLV-TLELSKCGIEVIEDAAFVGLDSLEWLKLD 179 (767)
Q Consensus 105 ~Ls~N~Lt~l~p~~f~~l~~L~---~L~Ls~N-~l~~l~~~~~~~l~~L~-~L~Ls~N~L~~i~~~~~~~l~~L~~L~Ls 179 (767)
+|++|.+++++. |..+++|+ .|+|++| .++.+++..|..+++|+ .|+|++|.|+.+++..|.. .+|+.|+|+
T Consensus 111 ~l~~n~l~~lp~--~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~-~~L~~L~L~ 187 (239)
T 2xwt_C 111 GIFNTGLKMFPD--LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNG-TKLDAVYLN 187 (239)
T ss_dssp EEEEECCCSCCC--CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTTTT-CEEEEEECT
T ss_pred eCCCCCCccccc--cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHhhcCC-CCCCEEEcC
Confidence 999999999764 88899998 9999999 99999999999999999 9999999999888877776 899999999
Q ss_pred CCc-cccccCCCC-CC-CCcccccCCCCCCC
Q psy12044 180 NNK-ITTISGSNI-LP-TGLHGIDLHHNPWT 207 (767)
Q Consensus 180 ~N~-Lt~ip~~~~-~~-~~L~~L~Ls~N~l~ 207 (767)
+|+ |+.++...+ .. ++|+.|+|++|++.
T Consensus 188 ~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~ 218 (239)
T 2xwt_C 188 KNKYLTVIDKDAFGGVYSGPSLLDVSQTSVT 218 (239)
T ss_dssp TCTTCCEECTTTTTTCSBCCSEEECTTCCCC
T ss_pred CCCCcccCCHHHhhccccCCcEEECCCCccc
Confidence 995 999987655 45 79999999999986
No 53
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.71 E-value=1.2e-17 Score=190.76 Aligned_cols=159 Identities=23% Similarity=0.304 Sum_probs=136.3
Q ss_pred CCccEEEeeCCCCCCCCchhhhccCCCCccEEEccCCCCCccCcccccCCCCCCEEEccCCCCCCCCCCCCC-CCCCCcE
Q psy12044 49 PNTQVLDYTGNNLKTLHNEKFQKMGLVNLQKIYLSRCRISVIDSKAFRGLTNLVDLDFSHNVLQTVPSDTFP-DYPSLMK 127 (767)
Q Consensus 49 ~~L~~L~Ls~N~L~~l~~~~f~~~~L~~L~~L~Ls~N~L~~i~p~~f~~L~~L~~L~Ls~N~Lt~l~p~~f~-~l~~L~~ 127 (767)
++|+.|+|++|.|+++++. .+++|+.|+|++|.|+++.+..|.++++|+.|+|++|.|+++++..|. .+++|+.
T Consensus 99 ~~L~~L~L~~N~l~~~~~~-----~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~ 173 (487)
T 3oja_A 99 PSIETLHAANNNISRVSCS-----RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEH 173 (487)
T ss_dssp TTCCEEECCSSCCCCEEEC-----CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCE
T ss_pred CCcCEEECcCCcCCCCCcc-----ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccE
Confidence 4555556666666555543 257899999999999999898999999999999999999998887775 7899999
Q ss_pred EECCCCcCcccccCCcCCCCCccEEeccCCCccccchhhhcCCCCCCeeeccCCccccccCCCCCCCCcccccCCCCCCC
Q psy12044 128 LTLSGNPIKQIKTGAFQPLSYLVTLELSKCGIEVIEDAAFVGLDSLEWLKLDNNKITTISGSNILPTGLHGIDLHHNPWT 207 (767)
Q Consensus 128 L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~L~~i~~~~~~~l~~L~~L~Ls~N~Lt~ip~~~~~~~~L~~L~Ls~N~l~ 207 (767)
|+|++|.|+++++ +..+++|+.|+|++|.|+++++. |..+++|+.|+|++|.|+.+|..+..+++|+.|+|++|++.
T Consensus 174 L~Ls~N~l~~~~~--~~~l~~L~~L~Ls~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~l~~N~l~ 250 (487)
T 3oja_A 174 LNLQYNFIYDVKG--QVVFAKLKTLDLSSNKLAFMGPE-FQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFH 250 (487)
T ss_dssp EECTTSCCCEEEC--CCCCTTCCEEECCSSCCCEECGG-GGGGTTCSEEECTTSCCCEECTTCCCCTTCCEEECTTCCBC
T ss_pred EecCCCccccccc--cccCCCCCEEECCCCCCCCCCHh-HcCCCCccEEEecCCcCcccchhhccCCCCCEEEcCCCCCc
Confidence 9999999999865 44689999999999999998876 88899999999999999999988888899999999999999
Q ss_pred chhhhhhh
Q psy12044 208 CDCLLIGL 215 (767)
Q Consensus 208 C~c~l~~l 215 (767)
|+|...++
T Consensus 251 c~~~~~~~ 258 (487)
T 3oja_A 251 CGTLRDFF 258 (487)
T ss_dssp HHHHHHHH
T ss_pred CcchHHHH
Confidence 98765444
No 54
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.71 E-value=4.3e-17 Score=171.37 Aligned_cols=171 Identities=27% Similarity=0.389 Sum_probs=154.3
Q ss_pred eeEEEecCCCcccccc-CCCCCccEEEeeCCCCCCCCchhhhccCCCCccEEEccCCCCCccCcccccCCCCCCEEEccC
Q psy12044 30 KQTVECVNKSLITVVE-GMDPNTQVLDYTGNNLKTLHNEKFQKMGLVNLQKIYLSRCRISVIDSKAFRGLTNLVDLDFSH 108 (767)
Q Consensus 30 ~~~v~C~~~~L~~iP~-~l~~~L~~L~Ls~N~L~~l~~~~f~~~~L~~L~~L~Ls~N~L~~i~p~~f~~L~~L~~L~Ls~ 108 (767)
-+.++.++..+..++. .-.++|++|+|++|.|+++++..|.. +++|+.|+|++|.|+++.+..|..+++|++|+|++
T Consensus 65 L~~L~l~~n~l~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~--l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 142 (272)
T 3rfs_A 65 VRYLALGGNKLHDISALKELTNLTYLILTGNQLQSLPNGVFDK--LTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAH 142 (272)
T ss_dssp CCEEECTTSCCCCCGGGTTCTTCCEEECTTSCCCCCCTTTTTT--CTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CcEEECCCCCCCCchhhcCCCCCCEEECCCCccCccChhHhcC--CcCCCEEECCCCcCCccCHHHhccCCCCCEEECCC
Confidence 4678888888887752 22678999999999999999988874 89999999999999999998899999999999999
Q ss_pred CCCCCCCCCCCCCCCCCcEEECCCCcCcccccCCcCCCCCccEEeccCCCccccchhhhcCCCCCCeeeccCCccccccC
Q psy12044 109 NVLQTVPSDTFPDYPSLMKLTLSGNPIKQIKTGAFQPLSYLVTLELSKCGIEVIEDAAFVGLDSLEWLKLDNNKITTISG 188 (767)
Q Consensus 109 N~Lt~l~p~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~L~~i~~~~~~~l~~L~~L~Ls~N~Lt~ip~ 188 (767)
|.|+++++..|..+++|+.|+|++|.++++++..|..+++|+.|+|++|.|+++++..|..+++|+.|+|++|.+...
T Consensus 143 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~-- 220 (272)
T 3rfs_A 143 NQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCT-- 220 (272)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCC--
T ss_pred CccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCcccc--
Confidence 999999999899999999999999999999998899999999999999999999998899999999999999988743
Q ss_pred CCCCCCCcccccCCCCCCCc
Q psy12044 189 SNILPTGLHGIDLHHNPWTC 208 (767)
Q Consensus 189 ~~~~~~~L~~L~Ls~N~l~C 208 (767)
.+.|+.|++..|.+..
T Consensus 221 ----~~~l~~l~~~~n~~~g 236 (272)
T 3rfs_A 221 ----CPGIRYLSEWINKHSG 236 (272)
T ss_dssp ----TTTTHHHHHHHHHTGG
T ss_pred ----CcHHHHHHHHHHhCCC
Confidence 3468888888888764
No 55
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.71 E-value=4.8e-17 Score=175.79 Aligned_cols=170 Identities=25% Similarity=0.300 Sum_probs=104.0
Q ss_pred EEEecCCCccccccCCCCCccEEEeeCCCCCCCCchhhhccCCCCccEEEccCCCCCc--cCcccccCCCCCCEEEccCC
Q psy12044 32 TVECVNKSLITVVEGMDPNTQVLDYTGNNLKTLHNEKFQKMGLVNLQKIYLSRCRISV--IDSKAFRGLTNLVDLDFSHN 109 (767)
Q Consensus 32 ~v~C~~~~L~~iP~~l~~~L~~L~Ls~N~L~~l~~~~f~~~~L~~L~~L~Ls~N~L~~--i~p~~f~~L~~L~~L~Ls~N 109 (767)
.++.++..+..+|..+.++|++|+|++|.|+.+++..|.. +++|+.|+|++|.++. ..+..|..+ +|+.|+|++|
T Consensus 106 ~L~L~~n~l~~l~~~~~~~L~~L~l~~n~i~~~~~~~~~~--l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n 182 (332)
T 2ft3_A 106 KLYISKNHLVEIPPNLPSSLVELRIHDNRIRKVPKGVFSG--LRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEA 182 (332)
T ss_dssp EEECCSSCCCSCCSSCCTTCCEEECCSSCCCCCCSGGGSS--CSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSS
T ss_pred EEECCCCcCCccCccccccCCEEECCCCccCccCHhHhCC--CccCCEEECCCCccccCCCCcccccCC-ccCEEECcCC
Confidence 3444444444555444455555555555555555444442 4555555555555532 444444444 5555555555
Q ss_pred CCCCCCCCCCCCCCCCcEEECCCCcCcccccCCcCCCCCccEEeccCCCccccchhhhcCCCCCCeeeccCCccccccCC
Q psy12044 110 VLQTVPSDTFPDYPSLMKLTLSGNPIKQIKTGAFQPLSYLVTLELSKCGIEVIEDAAFVGLDSLEWLKLDNNKITTISGS 189 (767)
Q Consensus 110 ~Lt~l~p~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~L~~i~~~~~~~l~~L~~L~Ls~N~Lt~ip~~ 189 (767)
.+++++...+ ++|+.|+|++|.++++.+..|..+++|+.|+|++|.|+++.+..|..+++|+.|+|++|+|+.+|..
T Consensus 183 ~l~~l~~~~~---~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~lp~~ 259 (332)
T 2ft3_A 183 KLTGIPKDLP---ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLSRVPAG 259 (332)
T ss_dssp BCSSCCSSSC---SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCCBCCTT
T ss_pred CCCccCcccc---CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCeecChh
Confidence 5555443221 4666777777777777666677777777777777777777776677777777777777777777766
Q ss_pred CCCCCCcccccCCCCCCC
Q psy12044 190 NILPTGLHGIDLHHNPWT 207 (767)
Q Consensus 190 ~~~~~~L~~L~Ls~N~l~ 207 (767)
+..+++|+.|+|++|++.
T Consensus 260 l~~l~~L~~L~l~~N~l~ 277 (332)
T 2ft3_A 260 LPDLKLLQVVYLHTNNIT 277 (332)
T ss_dssp GGGCTTCCEEECCSSCCC
T ss_pred hhcCccCCEEECCCCCCC
Confidence 666677777777777765
No 56
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.70 E-value=2.1e-17 Score=177.38 Aligned_cols=155 Identities=18% Similarity=0.151 Sum_probs=81.3
Q ss_pred CccEEEeeCCCCCCCCchhh--hccCCCCccEEEccCCCCCccCcccccCC-----CCCCEEEccCCCCCCCCCCCCCCC
Q psy12044 50 NTQVLDYTGNNLKTLHNEKF--QKMGLVNLQKIYLSRCRISVIDSKAFRGL-----TNLVDLDFSHNVLQTVPSDTFPDY 122 (767)
Q Consensus 50 ~L~~L~Ls~N~L~~l~~~~f--~~~~L~~L~~L~Ls~N~L~~i~p~~f~~L-----~~L~~L~Ls~N~Lt~l~p~~f~~l 122 (767)
+|++|+|++|.|++..+..+ . .+++|+.|+|++|.|+++ |..|..+ ++|++|+|++|.|+++++..|..+
T Consensus 96 ~L~~L~L~~n~l~~~~~~~~~~~--~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l 172 (312)
T 1wwl_A 96 GLQELTLENLEVTGTAPPPLLEA--TGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVF 172 (312)
T ss_dssp CCCEEEEEEEBCBSCCCCCSSSC--CSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCC
T ss_pred CccEEEccCCcccchhHHHHHHh--cCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccC
Confidence 45555555555554333332 2 255566666666665555 4444444 556666666666665555555566
Q ss_pred CCCcEEECCCCcCccc---c-cCCcCCCCCccEEeccCCCcccc---chhhhcCCCCCCeeeccCCcccccc--CCCCCC
Q psy12044 123 PSLMKLTLSGNPIKQI---K-TGAFQPLSYLVTLELSKCGIEVI---EDAAFVGLDSLEWLKLDNNKITTIS--GSNILP 193 (767)
Q Consensus 123 ~~L~~L~Ls~N~l~~l---~-~~~~~~l~~L~~L~Ls~N~L~~i---~~~~~~~l~~L~~L~Ls~N~Lt~ip--~~~~~~ 193 (767)
++|+.|+|++|++.+. + ...+..+++|+.|+|++|.|+++ ....+..+++|+.|+|++|+|++++ .....+
T Consensus 173 ~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l 252 (312)
T 1wwl_A 173 PALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWP 252 (312)
T ss_dssp SSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCC
T ss_pred CCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhc
Confidence 6666666666655442 1 11124555666666666655522 2233345556666666666665543 122234
Q ss_pred CCcccccCCCCCCC
Q psy12044 194 TGLHGIDLHHNPWT 207 (767)
Q Consensus 194 ~~L~~L~Ls~N~l~ 207 (767)
++|+.|+|++|.+.
T Consensus 253 ~~L~~L~Ls~N~l~ 266 (312)
T 1wwl_A 253 SQLNSLNLSFTGLK 266 (312)
T ss_dssp TTCCEEECTTSCCS
T ss_pred CCCCEEECCCCccC
Confidence 55666666666554
No 57
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.70 E-value=5.8e-17 Score=175.41 Aligned_cols=174 Identities=17% Similarity=0.154 Sum_probs=150.1
Q ss_pred CeeEEEecCCCccccccCC--CCCccEEEeeCCCCCCCCchhhhccCCCCccEEEccCCCCCccCcccccCCCCCCEEEc
Q psy12044 29 GKQTVECVNKSLITVVEGM--DPNTQVLDYTGNNLKTLHNEKFQKMGLVNLQKIYLSRCRISVIDSKAFRGLTNLVDLDF 106 (767)
Q Consensus 29 ~~~~v~C~~~~L~~iP~~l--~~~L~~L~Ls~N~L~~l~~~~f~~~~L~~L~~L~Ls~N~L~~i~p~~f~~L~~L~~L~L 106 (767)
.-..++.++..+..+|..+ .++|++|+|++|.|+.++ ..+.. +++|+.|+|++|.|+. +|..|.++++|++|+|
T Consensus 82 ~l~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~l~~lp-~~~~~--l~~L~~L~Ls~n~l~~-lp~~l~~l~~L~~L~L 157 (328)
T 4fcg_A 82 GRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLMELP-DTMQQ--FAGLETLTLARNPLRA-LPASIASLNRLRELSI 157 (328)
T ss_dssp TCCEEEEESSCCSSCCSCGGGGTTCSEEEEESSCCCCCC-SCGGG--GTTCSEEEEESCCCCC-CCGGGGGCTTCCEEEE
T ss_pred ceeEEEccCCCchhcChhhhhCCCCCEEECCCCCccchh-HHHhc--cCCCCEEECCCCcccc-CcHHHhcCcCCCEEEC
Confidence 3567999999999999877 679999999999999665 45553 8999999999999995 4778999999999999
Q ss_pred cCCCCCCCCCCCCCC---------CCCCcEEECCCCcCcccccCCcCCCCCccEEeccCCCccccchhhhcCCCCCCeee
Q psy12044 107 SHNVLQTVPSDTFPD---------YPSLMKLTLSGNPIKQIKTGAFQPLSYLVTLELSKCGIEVIEDAAFVGLDSLEWLK 177 (767)
Q Consensus 107 s~N~Lt~l~p~~f~~---------l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~L~~i~~~~~~~l~~L~~L~ 177 (767)
++|.+.+..|..+.. +++|+.|+|++|.|+.++ ..|..+++|+.|+|++|.|+++++ .|..+++|+.|+
T Consensus 158 ~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp-~~l~~l~~L~~L~L~~N~l~~l~~-~l~~l~~L~~L~ 235 (328)
T 4fcg_A 158 RACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLP-ASIANLQNLKSLKIRNSPLSALGP-AIHHLPKLEELD 235 (328)
T ss_dssp EEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCCCCC-GGGGGCTTCCEEEEESSCCCCCCG-GGGGCTTCCEEE
T ss_pred CCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcCcch-HhhcCCCCCCEEEccCCCCCcCch-hhccCCCCCEEE
Confidence 998888877776654 999999999999999665 468999999999999999998776 588999999999
Q ss_pred ccCCccc-cccCCCCCCCCcccccCCCCCCCc
Q psy12044 178 LDNNKIT-TISGSNILPTGLHGIDLHHNPWTC 208 (767)
Q Consensus 178 Ls~N~Lt-~ip~~~~~~~~L~~L~Ls~N~l~C 208 (767)
|++|++. .++..+..+++|+.|+|++|.+..
T Consensus 236 Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~ 267 (328)
T 4fcg_A 236 LRGCTALRNYPPIFGGRAPLKRLILKDCSNLL 267 (328)
T ss_dssp CTTCTTCCBCCCCTTCCCCCCEEECTTCTTCC
T ss_pred CcCCcchhhhHHHhcCCCCCCEEECCCCCchh
Confidence 9998877 556666778999999999998764
No 58
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.70 E-value=2.9e-16 Score=183.56 Aligned_cols=131 Identities=21% Similarity=0.358 Sum_probs=105.6
Q ss_pred eeEEEecCCCccccccCC---CCCccEEEeeCCCCCCCCchhhhccCCCCccEEEccCCCCCccCcccccCCCCCCEEEc
Q psy12044 30 KQTVECVNKSLITVVEGM---DPNTQVLDYTGNNLKTLHNEKFQKMGLVNLQKIYLSRCRISVIDSKAFRGLTNLVDLDF 106 (767)
Q Consensus 30 ~~~v~C~~~~L~~iP~~l---~~~L~~L~Ls~N~L~~l~~~~f~~~~L~~L~~L~Ls~N~L~~i~p~~f~~L~~L~~L~L 106 (767)
...+++.+..+..+|..+ .++|+.|+|++|.|+++++..|.. +++|+.|+|++|.|+++.+..|.++++|++|+|
T Consensus 53 l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~--l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 130 (597)
T 3oja_B 53 QKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAY--AHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVL 130 (597)
T ss_dssp CSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTT--CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred ceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcC--CCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEe
Confidence 367888888888888765 578888888888888888877774 788888888888888888888888888888888
Q ss_pred cCCCCCCCCCCCCCCCCCCcEEECCCCcCcccccCCcCCCCCccEEeccCCCcccc
Q psy12044 107 SHNVLQTVPSDTFPDYPSLMKLTLSGNPIKQIKTGAFQPLSYLVTLELSKCGIEVI 162 (767)
Q Consensus 107 s~N~Lt~l~p~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~L~~i 162 (767)
++|.|+.+++..|..+++|+.|+|++|.|+++++..|..+++|+.|+|++|.|+++
T Consensus 131 ~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~ 186 (597)
T 3oja_B 131 ERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV 186 (597)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBC
T ss_pred eCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCc
Confidence 88888888877778888888888888888888777777777777777777766543
No 59
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.70 E-value=2e-16 Score=174.63 Aligned_cols=177 Identities=19% Similarity=0.293 Sum_probs=142.3
Q ss_pred eeEEEecCCCccccccCC---CCCccEEEeeCCCCCCCCchhhhccCCCCccEEEccCCCCCccCcccccCCCCCCEEEc
Q psy12044 30 KQTVECVNKSLITVVEGM---DPNTQVLDYTGNNLKTLHNEKFQKMGLVNLQKIYLSRCRISVIDSKAFRGLTNLVDLDF 106 (767)
Q Consensus 30 ~~~v~C~~~~L~~iP~~l---~~~L~~L~Ls~N~L~~l~~~~f~~~~L~~L~~L~Ls~N~L~~i~p~~f~~L~~L~~L~L 106 (767)
-+.++..+..+..+|..+ .++|++|+|++|.|+++++..|.. +++|+.|+|++|.|+++.+..|.++++|++|+|
T Consensus 47 l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~--l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 124 (390)
T 3o6n_A 47 QKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAY--AHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVL 124 (390)
T ss_dssp CSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTT--CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred ceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccC--CCCcCEEECCCCCCCcCCHHHhcCCCCCCEEEC
Confidence 467888888888898765 578999999999999988888874 889999999999999988888899999999999
Q ss_pred cCCCCCCCCCCCCCCCCCCcEEECCCCcCcccccCCcCCCCCccEEeccCCCccccchh---------------------
Q psy12044 107 SHNVLQTVPSDTFPDYPSLMKLTLSGNPIKQIKTGAFQPLSYLVTLELSKCGIEVIEDA--------------------- 165 (767)
Q Consensus 107 s~N~Lt~l~p~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~L~~i~~~--------------------- 165 (767)
++|.|+.+++..|..+++|+.|+|++|.++++.+..|..+++|+.|+|++|.++++...
T Consensus 125 ~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~L~~L~l~~n~l~~~~~~ 204 (390)
T 3o6n_A 125 ERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAIP 204 (390)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBCCGGGCTTCSEEECCSSCCSEEECC
T ss_pred CCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCccccccccccceeecccccccccCCC
Confidence 99999988887788889999999999999888888888888888888888877654321
Q ss_pred --------------------------------------hhcCCCCCCeeeccCCccccccC-CCCCCCCcccccCCCCCC
Q psy12044 166 --------------------------------------AFVGLDSLEWLKLDNNKITTISG-SNILPTGLHGIDLHHNPW 206 (767)
Q Consensus 166 --------------------------------------~~~~l~~L~~L~Ls~N~Lt~ip~-~~~~~~~L~~L~Ls~N~l 206 (767)
.+..+++|+.|+|++|.|+.+.+ .+..+++|+.|+|++|.+
T Consensus 205 ~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l 284 (390)
T 3o6n_A 205 IAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRL 284 (390)
T ss_dssp SSCSEEECCSSCCCEEECCCCSSCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCC
T ss_pred CcceEEECCCCeeeeccccccccccEEECCCCCCcccHHHcCCCCccEEECCCCcCCCcChhHccccccCCEEECCCCcC
Confidence 23445677778888888876643 344567788888888877
Q ss_pred Cc
Q psy12044 207 TC 208 (767)
Q Consensus 207 ~C 208 (767)
..
T Consensus 285 ~~ 286 (390)
T 3o6n_A 285 VA 286 (390)
T ss_dssp CE
T ss_pred cc
Confidence 53
No 60
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.69 E-value=8.5e-17 Score=157.29 Aligned_cols=115 Identities=33% Similarity=0.589 Sum_probs=78.5
Q ss_pred CCCCCceecccCCeeEEEecCCCccccccCCCCCccEEEeeCCCCCCCCchhhhccCCCCccEEEccCCCCCccCccccc
Q psy12044 17 ACPTSCICKWKGGKQTVECVNKSLITVVEGMDPNTQVLDYTGNNLKTLHNEKFQKMGLVNLQKIYLSRCRISVIDSKAFR 96 (767)
Q Consensus 17 ~CP~~C~C~~~g~~~~v~C~~~~L~~iP~~l~~~L~~L~Ls~N~L~~l~~~~f~~~~L~~L~~L~Ls~N~L~~i~p~~f~ 96 (767)
+||..|.|.| +.++|++..+..+|..++++++.|+|++|.|+++.+..|.. +++|+.|+|++|+|+++.+..|.
T Consensus 2 ~CP~~C~C~~----~~l~~s~n~l~~ip~~~~~~l~~L~L~~N~i~~~~~~~~~~--l~~L~~L~Ls~N~l~~l~~~~f~ 75 (170)
T 3g39_A 2 ACPSQCSCSG----TTVDCSGKSLASVPTGIPTTTQVLYLYDNQITKLEPGVFDR--LTQLTRLDLDNNQLTVLPAGVFD 75 (170)
T ss_dssp CCC-CCEEET----TEEECTTSCCSSCCSCCCTTCSEEECCSSCCCCCCTTTTTT--CTTCSEEECCSSCCCCCCTTTTT
T ss_pred cCcCcCCcCC----CEEEeCCCCcCccCccCCCCCcEEEcCCCcCCccChhhhcC--cccCCEEECCCCCcCccChhhcc
Confidence 7999999987 45999999999999888777777777777777776666653 56666666666666666555566
Q ss_pred CCCCCCEEEccCCCCCCCCCCCCCCCCCCcEEECCCCcCcc
Q psy12044 97 GLTNLVDLDFSHNVLQTVPSDTFPDYPSLMKLTLSGNPIKQ 137 (767)
Q Consensus 97 ~L~~L~~L~Ls~N~Lt~l~p~~f~~l~~L~~L~Ls~N~l~~ 137 (767)
++++|++|+|++|+|+++++..|..+++|+.|+|++|.++.
T Consensus 76 ~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c 116 (170)
T 3g39_A 76 KLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLLNNPWDC 116 (170)
T ss_dssp TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCT
T ss_pred CCCCCCEEECCCCccCEeCHHHhcCCCCCCEEEeCCCCCCC
Confidence 66666666666666666555555555555555555555443
No 61
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.69 E-value=1.5e-16 Score=175.80 Aligned_cols=171 Identities=22% Similarity=0.356 Sum_probs=150.7
Q ss_pred EEecCCCccccccCC-CCCccEEEeeCCCCCCCCchhhhccCCCCccEEEccCCCCCccCcccccCCCCCCEEEccCCCC
Q psy12044 33 VECVNKSLITVVEGM-DPNTQVLDYTGNNLKTLHNEKFQKMGLVNLQKIYLSRCRISVIDSKAFRGLTNLVDLDFSHNVL 111 (767)
Q Consensus 33 v~C~~~~L~~iP~~l-~~~L~~L~Ls~N~L~~l~~~~f~~~~L~~L~~L~Ls~N~L~~i~p~~f~~L~~L~~L~Ls~N~L 111 (767)
+.+........+..+ ..+++.|++++|.++.++...|.. +++|+.|+|++|.|+.+.+..|..+++|++|+|++|.+
T Consensus 28 i~~~~~~~~~~~~~~~l~~l~~l~l~~~~l~~l~~~~~~~--l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l 105 (390)
T 3o6n_A 28 IDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDS--FRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAI 105 (390)
T ss_dssp ECSSCCCCEESCSSGGGCCCSEEEEESCEESEECTHHHHH--CCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred eecccccccccccccccCCceEEEecCCchhhCChhHhcc--cccCcEEECCCCcccccChhhccCCCCcCEEECCCCCC
Confidence 333333333333333 578999999999999999988885 89999999999999999998999999999999999999
Q ss_pred CCCCCCCCCCCCCCcEEECCCCcCcccccCCcCCCCCccEEeccCCCccccchhhhcCCCCCCeeeccCCccccccCCCC
Q psy12044 112 QTVPSDTFPDYPSLMKLTLSGNPIKQIKTGAFQPLSYLVTLELSKCGIEVIEDAAFVGLDSLEWLKLDNNKITTISGSNI 191 (767)
Q Consensus 112 t~l~p~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~L~~i~~~~~~~l~~L~~L~Ls~N~Lt~ip~~~~ 191 (767)
+++++..|..+++|+.|+|++|.++.+++..|..+++|+.|+|++|.++++.+..|..+++|+.|+|++|.++.++. .
T Consensus 106 ~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~--~ 183 (390)
T 3o6n_A 106 RYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDL--S 183 (390)
T ss_dssp CCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBCCG--G
T ss_pred CcCCHHHhcCCCCCCEEECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCcccc--c
Confidence 99999999999999999999999999998888999999999999999999999899999999999999999998753 3
Q ss_pred CCCCcccccCCCCCCC
Q psy12044 192 LPTGLHGIDLHHNPWT 207 (767)
Q Consensus 192 ~~~~L~~L~Ls~N~l~ 207 (767)
..++|+.|++++|.+.
T Consensus 184 ~l~~L~~L~l~~n~l~ 199 (390)
T 3o6n_A 184 LIPSLFHANVSYNLLS 199 (390)
T ss_dssp GCTTCSEEECCSSCCS
T ss_pred cccccceeeccccccc
Confidence 4578888888888775
No 62
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.69 E-value=1.2e-16 Score=172.82 Aligned_cols=155 Identities=19% Similarity=0.275 Sum_probs=137.4
Q ss_pred CCCccEEEeeCCCCCCCCchhhhccCCCCccEEEccCCCCCccCcccccCCCCCCEEEccCCCCCCCCCCCCCCCCCCcE
Q psy12044 48 DPNTQVLDYTGNNLKTLHNEKFQKMGLVNLQKIYLSRCRISVIDSKAFRGLTNLVDLDFSHNVLQTVPSDTFPDYPSLMK 127 (767)
Q Consensus 48 ~~~L~~L~Ls~N~L~~l~~~~f~~~~L~~L~~L~Ls~N~L~~i~p~~f~~L~~L~~L~Ls~N~Lt~l~p~~f~~l~~L~~ 127 (767)
..+++.|+|++|.|+.++...+. +++|++|+|++|.|+ .+|..|..+++|++|+|++|.|+.+ |..|..+++|+.
T Consensus 80 ~~~l~~L~L~~n~l~~lp~~l~~---l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~~l-p~~l~~l~~L~~ 154 (328)
T 4fcg_A 80 QPGRVALELRSVPLPQFPDQAFR---LSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLRAL-PASIASLNRLRE 154 (328)
T ss_dssp STTCCEEEEESSCCSSCCSCGGG---GTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCCCC-CGGGGGCTTCCE
T ss_pred ccceeEEEccCCCchhcChhhhh---CCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccccC-cHHHhcCcCCCE
Confidence 57899999999999988776543 899999999999999 5678899999999999999999955 567999999999
Q ss_pred EECCCCcCcccccCCcCC---------CCCccEEeccCCCccccchhhhcCCCCCCeeeccCCccccccCCCCCCCCccc
Q psy12044 128 LTLSGNPIKQIKTGAFQP---------LSYLVTLELSKCGIEVIEDAAFVGLDSLEWLKLDNNKITTISGSNILPTGLHG 198 (767)
Q Consensus 128 L~Ls~N~l~~l~~~~~~~---------l~~L~~L~Ls~N~L~~i~~~~~~~l~~L~~L~Ls~N~Lt~ip~~~~~~~~L~~ 198 (767)
|+|++|.+.+..+..+.. +++|+.|+|++|.|+.++ ..|..+++|+.|+|++|.|+.++..+..+++|+.
T Consensus 155 L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp-~~l~~l~~L~~L~L~~N~l~~l~~~l~~l~~L~~ 233 (328)
T 4fcg_A 155 LSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLP-ASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEE 233 (328)
T ss_dssp EEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCCCCC-GGGGGCTTCCEEEEESSCCCCCCGGGGGCTTCCE
T ss_pred EECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcCcch-HhhcCCCCCCEEEccCCCCCcCchhhccCCCCCE
Confidence 999998888777766654 999999999999999654 5699999999999999999999988778899999
Q ss_pred ccCCCCCCCc
Q psy12044 199 IDLHHNPWTC 208 (767)
Q Consensus 199 L~Ls~N~l~C 208 (767)
|+|++|.+..
T Consensus 234 L~Ls~n~~~~ 243 (328)
T 4fcg_A 234 LDLRGCTALR 243 (328)
T ss_dssp EECTTCTTCC
T ss_pred EECcCCcchh
Confidence 9999998864
No 63
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.69 E-value=5.1e-17 Score=195.63 Aligned_cols=178 Identities=21% Similarity=0.140 Sum_probs=132.4
Q ss_pred eeEEEecCCCcc-ccccCC--CCCccEEEeeCCCCCCCCchhhhccCCCCccEEEccCCCCCccCcccccCCCCCCEEEc
Q psy12044 30 KQTVECVNKSLI-TVVEGM--DPNTQVLDYTGNNLKTLHNEKFQKMGLVNLQKIYLSRCRISVIDSKAFRGLTNLVDLDF 106 (767)
Q Consensus 30 ~~~v~C~~~~L~-~iP~~l--~~~L~~L~Ls~N~L~~l~~~~f~~~~L~~L~~L~Ls~N~L~~i~p~~f~~L~~L~~L~L 106 (767)
-+.++..+..+. .+|..+ .++|+.|+|++|.+++..+..+.+ +++|+.|+|++|++++..|.+|..+++|++|+|
T Consensus 444 L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~--l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L 521 (768)
T 3rgz_A 444 LRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSN--CTNLNWISLSNNRLTGEIPKWIGRLENLAILKL 521 (768)
T ss_dssp CCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGG--CTTCCEEECCSSCCCSCCCGGGGGCTTCCEEEC
T ss_pred CCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhc--CCCCCEEEccCCccCCcCChHHhcCCCCCEEEC
Confidence 355677666666 556554 567888888888888777777764 778888888888888888888888888888888
Q ss_pred cCCCCCCCCCCCCCCCCCCcEEECCCCcCcccccC---------------------------------------------
Q psy12044 107 SHNVLQTVPSDTFPDYPSLMKLTLSGNPIKQIKTG--------------------------------------------- 141 (767)
Q Consensus 107 s~N~Lt~l~p~~f~~l~~L~~L~Ls~N~l~~l~~~--------------------------------------------- 141 (767)
++|.+++..|..|..+++|+.|+|++|.+++..|.
T Consensus 522 ~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 601 (768)
T 3rgz_A 522 SNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRS 601 (768)
T ss_dssp CSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCG
T ss_pred CCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccc
Confidence 88888877777788888888888888777644332
Q ss_pred -------------------------CcCCCCCccEEeccCCCccccchhhhcCCCCCCeeeccCCccc-cccCCCCCCCC
Q psy12044 142 -------------------------AFQPLSYLVTLELSKCGIEVIEDAAFVGLDSLEWLKLDNNKIT-TISGSNILPTG 195 (767)
Q Consensus 142 -------------------------~~~~l~~L~~L~Ls~N~L~~i~~~~~~~l~~L~~L~Ls~N~Lt-~ip~~~~~~~~ 195 (767)
.|..+++|+.|+|++|.+++.+|..|..+++|+.|+|++|+|+ .||..+..+++
T Consensus 602 ~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~ 681 (768)
T 3rgz_A 602 EQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRG 681 (768)
T ss_dssp GGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTT
T ss_pred hhhhccccccccccccceecccCchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCC
Confidence 2333566777888888888777777777888888888888877 56666666777
Q ss_pred cccccCCCCCCCch
Q psy12044 196 LHGIDLHHNPWTCD 209 (767)
Q Consensus 196 L~~L~Ls~N~l~C~ 209 (767)
|+.|+|++|.++..
T Consensus 682 L~~LdLs~N~l~g~ 695 (768)
T 3rgz_A 682 LNILDLSSNKLDGR 695 (768)
T ss_dssp CCEEECCSSCCEEC
T ss_pred CCEEECCCCcccCc
Confidence 77888888877643
No 64
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.68 E-value=1.7e-16 Score=185.58 Aligned_cols=172 Identities=23% Similarity=0.361 Sum_probs=151.2
Q ss_pred EEEecCCCccccccCC-CCCccEEEeeCCCCCCCCchhhhccCCCCccEEEccCCCCCccCcccccCCCCCCEEEccCCC
Q psy12044 32 TVECVNKSLITVVEGM-DPNTQVLDYTGNNLKTLHNEKFQKMGLVNLQKIYLSRCRISVIDSKAFRGLTNLVDLDFSHNV 110 (767)
Q Consensus 32 ~v~C~~~~L~~iP~~l-~~~L~~L~Ls~N~L~~l~~~~f~~~~L~~L~~L~Ls~N~L~~i~p~~f~~L~~L~~L~Ls~N~ 110 (767)
.+.|........+..+ ..+++.|++++|.++.+++..|.. +++|+.|+|++|.|+++.+..|..+++|++|+|++|.
T Consensus 33 ~i~~~~~~~~~~~~~l~l~~l~~l~l~~~~l~~lp~~~~~~--l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~ 110 (597)
T 3oja_B 33 HIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDS--FRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNA 110 (597)
T ss_dssp EECSSCCCCEESCSSGGGCCCSEEEESSCEESEECTHHHHH--CCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred eecccccccccCcccccCCCceEEEeeCCCCCCcCHHHHcc--CCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCc
Confidence 3444444433333333 578999999999999999998885 8999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCCCCCcEEECCCCcCcccccCCcCCCCCccEEeccCCCccccchhhhcCCCCCCeeeccCCccccccCCC
Q psy12044 111 LQTVPSDTFPDYPSLMKLTLSGNPIKQIKTGAFQPLSYLVTLELSKCGIEVIEDAAFVGLDSLEWLKLDNNKITTISGSN 190 (767)
Q Consensus 111 Lt~l~p~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~L~~i~~~~~~~l~~L~~L~Ls~N~Lt~ip~~~ 190 (767)
|+++++..|..+++|+.|+|++|.|+.+++..|..+++|+.|+|++|.|+++++..|..+++|+.|+|++|.|+.++..
T Consensus 111 l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~- 189 (597)
T 3oja_B 111 IRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLS- 189 (597)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCCGG-
T ss_pred CCCCCHHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcChh-
Confidence 9999999999999999999999999999998899999999999999999999999999999999999999999987633
Q ss_pred CCCCCcccccCCCCCCC
Q psy12044 191 ILPTGLHGIDLHHNPWT 207 (767)
Q Consensus 191 ~~~~~L~~L~Ls~N~l~ 207 (767)
.+++|+.|++++|.+.
T Consensus 190 -~l~~L~~L~l~~n~l~ 205 (597)
T 3oja_B 190 -LIPSLFHANVSYNLLS 205 (597)
T ss_dssp -GCTTCSEEECCSSCCS
T ss_pred -hhhhhhhhhcccCccc
Confidence 4467777888877765
No 65
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.68 E-value=1.1e-16 Score=175.38 Aligned_cols=152 Identities=27% Similarity=0.278 Sum_probs=140.7
Q ss_pred cEEEeeCCCCCCCCchhhhccCCCCccEEEccCCCCCccCccccc-CCCCCCEEEccCCCCCCCCCCCCCCCCCCcEEEC
Q psy12044 52 QVLDYTGNNLKTLHNEKFQKMGLVNLQKIYLSRCRISVIDSKAFR-GLTNLVDLDFSHNVLQTVPSDTFPDYPSLMKLTL 130 (767)
Q Consensus 52 ~~L~Ls~N~L~~l~~~~f~~~~L~~L~~L~Ls~N~L~~i~p~~f~-~L~~L~~L~Ls~N~Lt~l~p~~f~~l~~L~~L~L 130 (767)
+.++++++.|+.++.... ..|+.|+|++|.|+++.+..|. ++++|+.|+|++|+|+++++..|..+++|+.|+|
T Consensus 21 ~~l~c~~~~l~~iP~~~~-----~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~L 95 (361)
T 2xot_A 21 NILSCSKQQLPNVPQSLP-----SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDL 95 (361)
T ss_dssp TEEECCSSCCSSCCSSCC-----TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEEC
T ss_pred CEEEeCCCCcCccCccCC-----CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEEC
Confidence 478999999999886543 4689999999999999999898 9999999999999999999999999999999999
Q ss_pred CCCcCcccccCCcCCCCCccEEeccCCCccccchhhhcCCCCCCeeeccCCccccccCCCC----CCCCcccccCCCCCC
Q psy12044 131 SGNPIKQIKTGAFQPLSYLVTLELSKCGIEVIEDAAFVGLDSLEWLKLDNNKITTISGSNI----LPTGLHGIDLHHNPW 206 (767)
Q Consensus 131 s~N~l~~l~~~~~~~l~~L~~L~Ls~N~L~~i~~~~~~~l~~L~~L~Ls~N~Lt~ip~~~~----~~~~L~~L~Ls~N~l 206 (767)
++|.|+.+++..|..+++|+.|+|++|.|+.+.+..|..+++|+.|+|++|+|+.++...+ .+++|+.|+|++|.+
T Consensus 96 s~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l 175 (361)
T 2xot_A 96 SSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKL 175 (361)
T ss_dssp CSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCC
T ss_pred CCCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCC
Confidence 9999999999999999999999999999999999999999999999999999999998764 468999999999998
Q ss_pred Cc
Q psy12044 207 TC 208 (767)
Q Consensus 207 ~C 208 (767)
..
T Consensus 176 ~~ 177 (361)
T 2xot_A 176 KK 177 (361)
T ss_dssp CC
T ss_pred Cc
Confidence 73
No 66
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.68 E-value=8.1e-17 Score=170.05 Aligned_cols=159 Identities=25% Similarity=0.349 Sum_probs=79.7
Q ss_pred CccEEEeeCCCCCCCCchhhhccCCCCccEEEccCCCCCccCcccccCCCCCCEEEccCCCCCCCCCCCCCCCCCCcEEE
Q psy12044 50 NTQVLDYTGNNLKTLHNEKFQKMGLVNLQKIYLSRCRISVIDSKAFRGLTNLVDLDFSHNVLQTVPSDTFPDYPSLMKLT 129 (767)
Q Consensus 50 ~L~~L~Ls~N~L~~l~~~~f~~~~L~~L~~L~Ls~N~L~~i~p~~f~~L~~L~~L~Ls~N~Lt~l~p~~f~~l~~L~~L~ 129 (767)
+|++|+|++|.++++.+..|.. +++|+.|+|++|.|+.+.+..|..+++|++|+|++|.|+++++..|..+++|+.|+
T Consensus 106 ~L~~L~l~~n~l~~~~~~~~~~--l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 183 (285)
T 1ozn_A 106 RLHTLHLDRCGLQELGPGLFRG--LAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLL 183 (285)
T ss_dssp TCCEEECTTSCCCCCCTTTTTT--CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEE
T ss_pred CCCEEECCCCcCCEECHhHhhC--CcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCccccCEEE
Confidence 4444444444444444444432 44444444444444444444444444455555555544444444444455555555
Q ss_pred CCCCcCcccccCCcCCCCCccEEeccCCCccccchhhhcCCCCCCeeeccCCccccccCCCCCCCCcccccCCCCCCCch
Q psy12044 130 LSGNPIKQIKTGAFQPLSYLVTLELSKCGIEVIEDAAFVGLDSLEWLKLDNNKITTISGSNILPTGLHGIDLHHNPWTCD 209 (767)
Q Consensus 130 Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~L~~i~~~~~~~l~~L~~L~Ls~N~Lt~ip~~~~~~~~L~~L~Ls~N~l~C~ 209 (767)
|++|.++++.+..|..+++|+.|+|++|.|+++++..|..+++|+.|+|++|.+..-.........++.+....|.+.|.
T Consensus 184 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~~~~~~~~l~~~~~~~~~~~c~ 263 (285)
T 1ozn_A 184 LHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRARPLWAWLQKFRGSSSEVPCS 263 (285)
T ss_dssp CCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGGGHHHHHHHHHCCSEECCCBEE
T ss_pred CCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccCCCCcHHHHHHHHhcccccCccccC
Confidence 55555555544455555555555555555555555555555555555555555542221111112355566778888875
Q ss_pred h
Q psy12044 210 C 210 (767)
Q Consensus 210 c 210 (767)
-
T Consensus 264 ~ 264 (285)
T 1ozn_A 264 L 264 (285)
T ss_dssp E
T ss_pred C
Confidence 3
No 67
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.68 E-value=2.5e-16 Score=160.46 Aligned_cols=132 Identities=30% Similarity=0.413 Sum_probs=123.5
Q ss_pred cEEEeeCCCCCCCCchhhhccCCCCccEEEccCCCCCccCcccccCCCCCCEEEccCCCCCCCCCCCCCCCCCCcEEECC
Q psy12044 52 QVLDYTGNNLKTLHNEKFQKMGLVNLQKIYLSRCRISVIDSKAFRGLTNLVDLDFSHNVLQTVPSDTFPDYPSLMKLTLS 131 (767)
Q Consensus 52 ~~L~Ls~N~L~~l~~~~f~~~~L~~L~~L~Ls~N~L~~i~p~~f~~L~~L~~L~Ls~N~Lt~l~p~~f~~l~~L~~L~Ls 131 (767)
+.++++++.|+.++.... .+|+.|+|++|.|+.+.+..|..+++|+.|+|++|.|+++.+..|..+++|+.|+|+
T Consensus 14 ~~v~c~~~~l~~iP~~l~-----~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls 88 (220)
T 2v9t_B 14 NIVDCRGKGLTEIPTNLP-----ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLY 88 (220)
T ss_dssp TEEECTTSCCSSCCSSCC-----TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECC
T ss_pred CEEEcCCCCcCcCCCccC-----cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECC
Confidence 478999999999876532 589999999999999999899999999999999999999999999999999999999
Q ss_pred CCcCcccccCCcCCCCCccEEeccCCCccccchhhhcCCCCCCeeeccCCccccccC
Q psy12044 132 GNPIKQIKTGAFQPLSYLVTLELSKCGIEVIEDAAFVGLDSLEWLKLDNNKITTISG 188 (767)
Q Consensus 132 ~N~l~~l~~~~~~~l~~L~~L~Ls~N~L~~i~~~~~~~l~~L~~L~Ls~N~Lt~ip~ 188 (767)
+|.|+.+++..|..+++|+.|+|++|.|+++.+..|..+++|+.|+|++|+|+.++.
T Consensus 89 ~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~ 145 (220)
T 2v9t_B 89 GNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAK 145 (220)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCT
T ss_pred CCcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECH
Confidence 999999999999999999999999999999999999999999999999999998764
No 68
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.67 E-value=1.1e-16 Score=192.63 Aligned_cols=178 Identities=23% Similarity=0.212 Sum_probs=158.5
Q ss_pred eeEEEecCCCcc-ccccCC--CCCccEEEeeCCCCCCCCchhhhccCCCCccEEEccCCCCCccCcccccCCCCCCEEEc
Q psy12044 30 KQTVECVNKSLI-TVVEGM--DPNTQVLDYTGNNLKTLHNEKFQKMGLVNLQKIYLSRCRISVIDSKAFRGLTNLVDLDF 106 (767)
Q Consensus 30 ~~~v~C~~~~L~-~iP~~l--~~~L~~L~Ls~N~L~~l~~~~f~~~~L~~L~~L~Ls~N~L~~i~p~~f~~L~~L~~L~L 106 (767)
-+.++.++..+. .+|..+ .++|++|+|++|++++..+..+.. +++|+.|+|++|.+++.+|..|..+++|+.|+|
T Consensus 468 L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~--l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L 545 (768)
T 3rgz_A 468 LETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGR--LENLAILKLSNNSFSGNIPAELGDCRSLIWLDL 545 (768)
T ss_dssp CCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGG--CTTCCEEECCSSCCEEECCGGGGGCTTCCEEEC
T ss_pred ceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhc--CCCCCEEECCCCcccCcCCHHHcCCCCCCEEEC
Confidence 467888888887 566655 689999999999999988888885 899999999999999999999999999999999
Q ss_pred cCCCCCCCCCC---------------------------------------------------------------------
Q psy12044 107 SHNVLQTVPSD--------------------------------------------------------------------- 117 (767)
Q Consensus 107 s~N~Lt~l~p~--------------------------------------------------------------------- 117 (767)
++|.+++..|.
T Consensus 546 s~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~ 625 (768)
T 3rgz_A 546 NTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTS 625 (768)
T ss_dssp CSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECC
T ss_pred CCCccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCc
Confidence 99988765443
Q ss_pred -CCCCCCCCcEEECCCCcCcccccCCcCCCCCccEEeccCCCccccchhhhcCCCCCCeeeccCCccc-cccCCCCCCCC
Q psy12044 118 -TFPDYPSLMKLTLSGNPIKQIKTGAFQPLSYLVTLELSKCGIEVIEDAAFVGLDSLEWLKLDNNKIT-TISGSNILPTG 195 (767)
Q Consensus 118 -~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~L~~i~~~~~~~l~~L~~L~Ls~N~Lt-~ip~~~~~~~~ 195 (767)
.|..+++|+.|+|++|.+++.+|..|+.+++|+.|+|++|.|++.+|..|..+++|+.|+|++|+|+ .||..+..+.+
T Consensus 626 ~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~ 705 (768)
T 3rgz_A 626 PTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTM 705 (768)
T ss_dssp CSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCC
T ss_pred hhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCC
Confidence 3445678999999999999999999999999999999999999999999999999999999999999 66777777889
Q ss_pred cccccCCCCCCCch
Q psy12044 196 LHGIDLHHNPWTCD 209 (767)
Q Consensus 196 L~~L~Ls~N~l~C~ 209 (767)
|+.|+|++|++.+.
T Consensus 706 L~~L~ls~N~l~g~ 719 (768)
T 3rgz_A 706 LTEIDLSNNNLSGP 719 (768)
T ss_dssp CSEEECCSSEEEEE
T ss_pred CCEEECcCCccccc
Confidence 99999999999864
No 69
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.67 E-value=2.6e-16 Score=154.59 Aligned_cols=119 Identities=31% Similarity=0.564 Sum_probs=84.1
Q ss_pred hccCCCCCceecccCCeeEEEecCCCccccccCCCCCccEEEeeCCCCCCCCchhhhccCCCCccEEEccCCCCCccCcc
Q psy12044 14 IVSACPTSCICKWKGGKQTVECVNKSLITVVEGMDPNTQVLDYTGNNLKTLHNEKFQKMGLVNLQKIYLSRCRISVIDSK 93 (767)
Q Consensus 14 ~~~~CP~~C~C~~~g~~~~v~C~~~~L~~iP~~l~~~L~~L~Ls~N~L~~l~~~~f~~~~L~~L~~L~Ls~N~L~~i~p~ 93 (767)
++.+||..|.|.. ..++|++..+..+|..++++|+.|+|++|.|+++++..|.. +++|+.|+|++|+|+++.+.
T Consensus 2 ~~~~CP~~C~C~~----~~l~~~~n~l~~iP~~~~~~L~~L~Ls~N~l~~~~~~~~~~--l~~L~~L~Ls~N~l~~i~~~ 75 (174)
T 2r9u_A 2 HSAGCPSQCSCDQ----TLVNCQNIRLASVPAGIPTDKQRLWLNNNQITKLEPGVFDH--LVNLQQLYFNSNKLTAIPTG 75 (174)
T ss_dssp CCCSSCTTSEECS----SEEECCSSCCSSCCSCCCTTCSEEECCSSCCCCCCTTTTTT--CTTCCEEECCSSCCCCCCTT
T ss_pred CCCCCCCCCEECC----cEEEeCCCCCCccCCCcCCCCcEEEeCCCCccccCHHHhcC--CcCCCEEECCCCCCCccChh
Confidence 3578999999974 57999999999999888888888888888777777666653 66666666666666666555
Q ss_pred cccCCCCCCEEEccCCCCCCCCCCCCCCCCCCcEEECCCCcCccc
Q psy12044 94 AFRGLTNLVDLDFSHNVLQTVPSDTFPDYPSLMKLTLSGNPIKQI 138 (767)
Q Consensus 94 ~f~~L~~L~~L~Ls~N~Lt~l~p~~f~~l~~L~~L~Ls~N~l~~l 138 (767)
.|.++++|+.|+|++|+|+++++..|..+++|+.|+|++|.+...
T Consensus 76 ~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~~~c~ 120 (174)
T 2r9u_A 76 VFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYLYNNPWDCE 120 (174)
T ss_dssp TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCBCTT
T ss_pred HhCCcchhhEEECCCCccceeCHHHhccccCCCEEEeCCCCcccc
Confidence 566666666666666666666655555566666666666655433
No 70
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.67 E-value=5e-16 Score=166.48 Aligned_cols=166 Identities=22% Similarity=0.290 Sum_probs=141.0
Q ss_pred eeEEEecCCCccccccCC--CCCccEEEeeCCCCCCCCchhhhccCCCCccEEEccCCCCCccCcccccCCCCCCEEEcc
Q psy12044 30 KQTVECVNKSLITVVEGM--DPNTQVLDYTGNNLKTLHNEKFQKMGLVNLQKIYLSRCRISVIDSKAFRGLTNLVDLDFS 107 (767)
Q Consensus 30 ~~~v~C~~~~L~~iP~~l--~~~L~~L~Ls~N~L~~l~~~~f~~~~L~~L~~L~Ls~N~L~~i~p~~f~~L~~L~~L~Ls 107 (767)
-+.+++.+..+..+|. + .++|+.|+|++|.|+++.+ +. .+++|+.|+|++|.|+++. .|..+++|++|+|+
T Consensus 43 L~~L~l~~~~i~~l~~-~~~l~~L~~L~L~~n~i~~~~~--~~--~l~~L~~L~L~~n~l~~~~--~~~~l~~L~~L~l~ 115 (308)
T 1h6u_A 43 ITTLSAFGTGVTTIEG-VQYLNNLIGLELKDNQITDLAP--LK--NLTKITELELSGNPLKNVS--AIAGLQSIKTLDLT 115 (308)
T ss_dssp CCEEECTTSCCCCCTT-GGGCTTCCEEECCSSCCCCCGG--GT--TCCSCCEEECCSCCCSCCG--GGTTCTTCCEEECT
T ss_pred cCEEEeeCCCccCchh-hhccCCCCEEEccCCcCCCChh--Hc--cCCCCCEEEccCCcCCCch--hhcCCCCCCEEECC
Confidence 4678888888887763 4 6789999999999998877 55 3889999999999998863 58899999999999
Q ss_pred CCCCCCCCCCCCCCCCCCcEEECCCCcCcccccCCcCCCCCccEEeccCCCccccchhhhcCCCCCCeeeccCCcccccc
Q psy12044 108 HNVLQTVPSDTFPDYPSLMKLTLSGNPIKQIKTGAFQPLSYLVTLELSKCGIEVIEDAAFVGLDSLEWLKLDNNKITTIS 187 (767)
Q Consensus 108 ~N~Lt~l~p~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~L~~i~~~~~~~l~~L~~L~Ls~N~Lt~ip 187 (767)
+|.|+++++ |..+++|+.|+|++|.++++.+ +..+++|+.|+|++|.|+++.+ +..+++|+.|+|++|.|+.++
T Consensus 116 ~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~ 189 (308)
T 1h6u_A 116 STQITDVTP--LAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDLTP--LANLSKLTTLKADDNKISDIS 189 (308)
T ss_dssp TSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCG
T ss_pred CCCCCCchh--hcCCCCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCCCChh--hcCCCCCCEEECCCCccCcCh
Confidence 999998764 8889999999999999998876 7888999999999999998776 888999999999999999887
Q ss_pred CCCCCCCCcccccCCCCCCCch
Q psy12044 188 GSNILPTGLHGIDLHHNPWTCD 209 (767)
Q Consensus 188 ~~~~~~~~L~~L~Ls~N~l~C~ 209 (767)
. +..+++|+.|+|++|.+...
T Consensus 190 ~-l~~l~~L~~L~L~~N~l~~~ 210 (308)
T 1h6u_A 190 P-LASLPNLIEVHLKNNQISDV 210 (308)
T ss_dssp G-GGGCTTCCEEECTTSCCCBC
T ss_pred h-hcCCCCCCEEEccCCccCcc
Confidence 6 45668899999999988743
No 71
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.67 E-value=6.1e-17 Score=173.72 Aligned_cols=175 Identities=16% Similarity=0.133 Sum_probs=145.3
Q ss_pred eeEEEecCCCcc-ccccCC----CCCccEEEeeCCCCCCCCchhhhcc---CCCCccEEEccCCCCCccCcccccCCCCC
Q psy12044 30 KQTVECVNKSLI-TVVEGM----DPNTQVLDYTGNNLKTLHNEKFQKM---GLVNLQKIYLSRCRISVIDSKAFRGLTNL 101 (767)
Q Consensus 30 ~~~v~C~~~~L~-~iP~~l----~~~L~~L~Ls~N~L~~l~~~~f~~~---~L~~L~~L~Ls~N~L~~i~p~~f~~L~~L 101 (767)
-+.++.++..+. .+|..+ .++|++|+|++|.|+++ +..+..+ .+++|+.|+|++|.|+++.+..|..+++|
T Consensus 97 L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L 175 (312)
T 1wwl_A 97 LQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPAL 175 (312)
T ss_dssp CCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSC
T ss_pred ccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCC
Confidence 356777777776 577654 67899999999999999 5666541 12899999999999999999999999999
Q ss_pred CEEEccCCCCCCCC--CC--CCCCCCCCcEEECCCCcCccc---ccCCcCCCCCccEEeccCCCccccch-hhhcCCCCC
Q psy12044 102 VDLDFSHNVLQTVP--SD--TFPDYPSLMKLTLSGNPIKQI---KTGAFQPLSYLVTLELSKCGIEVIED-AAFVGLDSL 173 (767)
Q Consensus 102 ~~L~Ls~N~Lt~l~--p~--~f~~l~~L~~L~Ls~N~l~~l---~~~~~~~l~~L~~L~Ls~N~L~~i~~-~~~~~l~~L 173 (767)
++|+|++|++.+.. +. .+..+++|+.|+|++|.|+++ ....+..+++|+.|+|++|.|++.++ ..+..+++|
T Consensus 176 ~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L 255 (312)
T 1wwl_A 176 STLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQL 255 (312)
T ss_dssp CEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTC
T ss_pred CEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCC
Confidence 99999999987641 12 247899999999999999944 33445678999999999999999774 456678999
Q ss_pred CeeeccCCccccccCCCCCCCCcccccCCCCCCC
Q psy12044 174 EWLKLDNNKITTISGSNILPTGLHGIDLHHNPWT 207 (767)
Q Consensus 174 ~~L~Ls~N~Lt~ip~~~~~~~~L~~L~Ls~N~l~ 207 (767)
+.|+|++|+|+.+|..++ ++|+.|+|++|.+.
T Consensus 256 ~~L~Ls~N~l~~ip~~~~--~~L~~L~Ls~N~l~ 287 (312)
T 1wwl_A 256 NSLNLSFTGLKQVPKGLP--AKLSVLDLSYNRLD 287 (312)
T ss_dssp CEEECTTSCCSSCCSSCC--SEEEEEECCSSCCC
T ss_pred CEEECCCCccChhhhhcc--CCceEEECCCCCCC
Confidence 999999999999988776 78999999999987
No 72
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.66 E-value=3.1e-16 Score=168.03 Aligned_cols=165 Identities=21% Similarity=0.311 Sum_probs=148.1
Q ss_pred eeEEEecCCCccccccCC--CCCccEEEeeCCCCCCCCchhhhccCCCCccEEEccCCCCCccCcccccCCCCCCEEEcc
Q psy12044 30 KQTVECVNKSLITVVEGM--DPNTQVLDYTGNNLKTLHNEKFQKMGLVNLQKIYLSRCRISVIDSKAFRGLTNLVDLDFS 107 (767)
Q Consensus 30 ~~~v~C~~~~L~~iP~~l--~~~L~~L~Ls~N~L~~l~~~~f~~~~L~~L~~L~Ls~N~L~~i~p~~f~~L~~L~~L~Ls 107 (767)
-+.++.++..+..++. + .++|++|+|++|.|++++ .+. .+++|+.|+|++|.|+++.+ |..+++|++|+|+
T Consensus 65 L~~L~L~~n~i~~~~~-~~~l~~L~~L~L~~n~l~~~~--~~~--~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~ 137 (308)
T 1h6u_A 65 LIGLELKDNQITDLAP-LKNLTKITELELSGNPLKNVS--AIA--GLQSIKTLDLTSTQITDVTP--LAGLSNLQVLYLD 137 (308)
T ss_dssp CCEEECCSSCCCCCGG-GTTCCSCCEEECCSCCCSCCG--GGT--TCTTCCEEECTTSCCCCCGG--GTTCTTCCEEECC
T ss_pred CCEEEccCCcCCCChh-HccCCCCCEEEccCCcCCCch--hhc--CCCCCCEEECCCCCCCCchh--hcCCCCCCEEECC
Confidence 4678999988888886 4 578999999999999985 455 38999999999999999743 9999999999999
Q ss_pred CCCCCCCCCCCCCCCCCCcEEECCCCcCcccccCCcCCCCCccEEeccCCCccccchhhhcCCCCCCeeeccCCcccccc
Q psy12044 108 HNVLQTVPSDTFPDYPSLMKLTLSGNPIKQIKTGAFQPLSYLVTLELSKCGIEVIEDAAFVGLDSLEWLKLDNNKITTIS 187 (767)
Q Consensus 108 ~N~Lt~l~p~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~L~~i~~~~~~~l~~L~~L~Ls~N~Lt~ip 187 (767)
+|.++++.+ +..+++|+.|+|++|.++++.+ +..+++|+.|+|++|.|+++.+ +..+++|+.|+|++|+|+.++
T Consensus 138 ~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~L~~N~l~~~~ 211 (308)
T 1h6u_A 138 LNQITNISP--LAGLTNLQYLSIGNAQVSDLTP--LANLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVS 211 (308)
T ss_dssp SSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECTTSCCCBCG
T ss_pred CCccCcCcc--ccCCCCccEEEccCCcCCCChh--hcCCCCCCEEECCCCccCcChh--hcCCCCCCEEEccCCccCccc
Confidence 999999876 8899999999999999999876 8899999999999999999876 888999999999999999888
Q ss_pred CCCCCCCCcccccCCCCCCCc
Q psy12044 188 GSNILPTGLHGIDLHHNPWTC 208 (767)
Q Consensus 188 ~~~~~~~~L~~L~Ls~N~l~C 208 (767)
+ +..+++|+.|+|++|++.+
T Consensus 212 ~-l~~l~~L~~L~l~~N~i~~ 231 (308)
T 1h6u_A 212 P-LANTSNLFIVTLTNQTITN 231 (308)
T ss_dssp G-GTTCTTCCEEEEEEEEEEC
T ss_pred c-ccCCCCCCEEEccCCeeec
Confidence 5 5667899999999999875
No 73
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.66 E-value=4.7e-16 Score=165.34 Aligned_cols=151 Identities=22% Similarity=0.241 Sum_probs=121.4
Q ss_pred CCccEEEeeCCCCCCCCchhhhccCCCCccEEEccCCCCCccCcccccCCCCCCEEEccCCCCCCCCCCCCCCCCCCcEE
Q psy12044 49 PNTQVLDYTGNNLKTLHNEKFQKMGLVNLQKIYLSRCRISVIDSKAFRGLTNLVDLDFSHNVLQTVPSDTFPDYPSLMKL 128 (767)
Q Consensus 49 ~~L~~L~Ls~N~L~~l~~~~f~~~~L~~L~~L~Ls~N~L~~i~p~~f~~L~~L~~L~Ls~N~Lt~l~p~~f~~l~~L~~L 128 (767)
++++.|+++++.|+.++...+ ++|+.|+|++|.|+++.+..|.++++|+.|+|++|.|+++.+. ..+++|+.|
T Consensus 10 ~~l~~l~~~~~~l~~ip~~~~-----~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~--~~l~~L~~L 82 (290)
T 1p9a_G 10 ASHLEVNCDKRNLTALPPDLP-----KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD--GTLPVLGTL 82 (290)
T ss_dssp TTCCEEECTTSCCSSCCSCCC-----TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC--SCCTTCCEE
T ss_pred CCccEEECCCCCCCcCCCCCC-----CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC--CCCCcCCEE
Confidence 579999999999999886543 5799999999999999999999999999999999999887653 567778888
Q ss_pred ECCCCcCcccccCCcCCCCCccEEeccCCCccccchhhhcCCCCCCeeeccCCccccccCCCC-CCCCcccccCCCCCCC
Q psy12044 129 TLSGNPIKQIKTGAFQPLSYLVTLELSKCGIEVIEDAAFVGLDSLEWLKLDNNKITTISGSNI-LPTGLHGIDLHHNPWT 207 (767)
Q Consensus 129 ~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~L~~i~~~~~~~l~~L~~L~Ls~N~Lt~ip~~~~-~~~~L~~L~Ls~N~l~ 207 (767)
+|++|.|+.++. .+..+++|+.|+|++|.|+++++..|..+++|+.|+|++|+|+.++...+ .+++|+.|+|++|.+.
T Consensus 83 ~Ls~N~l~~l~~-~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 161 (290)
T 1p9a_G 83 DLSHNQLQSLPL-LGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLT 161 (290)
T ss_dssp ECCSSCCSSCCC-CTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCS
T ss_pred ECCCCcCCcCch-hhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCC
Confidence 888888776643 56677778888888888877777777777778888888887777776654 4567777777777776
No 74
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.65 E-value=1e-16 Score=194.11 Aligned_cols=117 Identities=19% Similarity=0.175 Sum_probs=67.5
Q ss_pred CcccccCCCCCCEEEccCCCCCC-----------------CCCCCCC--CCCCCcEEECCCCcCcccccCCcCCCCCccE
Q psy12044 91 DSKAFRGLTNLVDLDFSHNVLQT-----------------VPSDTFP--DYPSLMKLTLSGNPIKQIKTGAFQPLSYLVT 151 (767)
Q Consensus 91 ~p~~f~~L~~L~~L~Ls~N~Lt~-----------------l~p~~f~--~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~ 151 (767)
+|..|.++++|+.|+|++|.|++ .+|..+. .+++|+.|+|++|.+.+..|..|.++++|+.
T Consensus 440 IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~ 519 (876)
T 4ecn_A 440 ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQS 519 (876)
T ss_dssp ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCE
T ss_pred hhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCE
Confidence 34456666666666666666665 1334444 6666666666666666555555666666666
Q ss_pred EeccCCC-ccc-cchhhhcCCC-------CCCeeeccCCccccccC--CCCCCCCcccccCCCCCCC
Q psy12044 152 LELSKCG-IEV-IEDAAFVGLD-------SLEWLKLDNNKITTISG--SNILPTGLHGIDLHHNPWT 207 (767)
Q Consensus 152 L~Ls~N~-L~~-i~~~~~~~l~-------~L~~L~Ls~N~Lt~ip~--~~~~~~~L~~L~Ls~N~l~ 207 (767)
|+|++|. |++ ..|..+..+. +|+.|+|++|+|+.+|. .+..+++|+.|+|++|.+.
T Consensus 520 L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~~~l~~L~~L~~L~Ls~N~l~ 586 (876)
T 4ecn_A 520 LNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVR 586 (876)
T ss_dssp EECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCCHHHHTTCTTCCEEECTTSCCC
T ss_pred EECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCCccCChhhhhcCCCCCEEECCCCCcc
Confidence 6666665 555 4443333333 66666666666665555 4455556666666666554
No 75
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.65 E-value=4.7e-16 Score=155.33 Aligned_cols=151 Identities=15% Similarity=0.133 Sum_probs=131.6
Q ss_pred CCCccEEEeeCCCCCCCCchhhhccCCCCccEEEccCCCCCccCcccccCCCCCCEEEccCCCCCCCCCCCCCCCCCCcE
Q psy12044 48 DPNTQVLDYTGNNLKTLHNEKFQKMGLVNLQKIYLSRCRISVIDSKAFRGLTNLVDLDFSHNVLQTVPSDTFPDYPSLMK 127 (767)
Q Consensus 48 ~~~L~~L~Ls~N~L~~l~~~~f~~~~L~~L~~L~Ls~N~L~~i~p~~f~~L~~L~~L~Ls~N~Lt~l~p~~f~~l~~L~~ 127 (767)
.++|+.|++++|.|+.++ .+.. +++|+.|+|++|.++.+ ..|..+++|++|+|++|.+++..+..|..+++|+.
T Consensus 43 l~~L~~L~l~~n~i~~l~--~l~~--l~~L~~L~l~~n~~~~~--~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~ 116 (197)
T 4ezg_A 43 MNSLTYITLANINVTDLT--GIEY--AHNIKDLTINNIHATNY--NPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTL 116 (197)
T ss_dssp HHTCCEEEEESSCCSCCT--TGGG--CTTCSEEEEESCCCSCC--GGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCE
T ss_pred cCCccEEeccCCCccChH--HHhc--CCCCCEEEccCCCCCcc--hhhhcCCCCCEEEeECCccCcccChhhcCCCCCCE
Confidence 467999999999999877 3553 89999999999977765 46899999999999999999877788999999999
Q ss_pred EECCCCcCcccccCCcCCCCCccEEeccCCC-ccccchhhhcCCCCCCeeeccCCccccccCCCCCCCCcccccCCCCCC
Q psy12044 128 LTLSGNPIKQIKTGAFQPLSYLVTLELSKCG-IEVIEDAAFVGLDSLEWLKLDNNKITTISGSNILPTGLHGIDLHHNPW 206 (767)
Q Consensus 128 L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~-L~~i~~~~~~~l~~L~~L~Ls~N~Lt~ip~~~~~~~~L~~L~Ls~N~l 206 (767)
|+|++|.+++..+..|..+++|+.|+|++|. ++.++ .+..+++|+.|+|++|.|+.++ .+..+++|+.|++++|++
T Consensus 117 L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~--~l~~l~~L~~L~l~~n~i~~~~-~l~~l~~L~~L~l~~N~i 193 (197)
T 4ezg_A 117 LDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM--PLKTLPELKSLNIQFDGVHDYR-GIEDFPKLNQLYAFSQTI 193 (197)
T ss_dssp EECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG--GGGGCSSCCEEECTTBCCCCCT-TGGGCSSCCEEEECBC--
T ss_pred EEecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH--hhcCCCCCCEEECCCCCCcChH-HhccCCCCCEEEeeCccc
Confidence 9999999998777789999999999999998 87775 5889999999999999999987 555678999999999987
Q ss_pred C
Q psy12044 207 T 207 (767)
Q Consensus 207 ~ 207 (767)
.
T Consensus 194 ~ 194 (197)
T 4ezg_A 194 G 194 (197)
T ss_dssp -
T ss_pred C
Confidence 4
No 76
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.65 E-value=5.1e-16 Score=165.09 Aligned_cols=165 Identities=24% Similarity=0.337 Sum_probs=127.3
Q ss_pred eEEEecCCCcccccc-CCCCCccEEEeeCCCCCCCCchhhhccCCCCccEEEccCCCCCccCcccccCCCCCCEEEccCC
Q psy12044 31 QTVECVNKSLITVVE-GMDPNTQVLDYTGNNLKTLHNEKFQKMGLVNLQKIYLSRCRISVIDSKAFRGLTNLVDLDFSHN 109 (767)
Q Consensus 31 ~~v~C~~~~L~~iP~-~l~~~L~~L~Ls~N~L~~l~~~~f~~~~L~~L~~L~Ls~N~L~~i~p~~f~~L~~L~~L~Ls~N 109 (767)
+.+++++..+..++. .-.++|++|+|++|.|+++.+ +. .+++|+.|+|++|.|+.+. .+..+++|++|+|++|
T Consensus 49 ~~L~l~~~~i~~~~~~~~l~~L~~L~L~~n~l~~~~~--l~--~l~~L~~L~l~~n~l~~~~--~l~~l~~L~~L~L~~n 122 (291)
T 1h6t_A 49 DQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIKP--LA--NLKNLGWLFLDENKVKDLS--SLKDLKKLKSLSLEHN 122 (291)
T ss_dssp CEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGG--GT--TCTTCCEEECCSSCCCCGG--GGTTCTTCCEEECTTS
T ss_pred cEEEccCCCcccChhHhcCCCCCEEEccCCccCCCcc--cc--cCCCCCEEECCCCcCCCCh--hhccCCCCCEEECCCC
Confidence 567777777777653 115778888888888888776 54 3788888888888888753 3788888888888888
Q ss_pred CCCCCCCCCCCCCCCCcEEECCCCcCcccccCCcCCCCCccEEeccCCCccccchhhhcCCCCCCeeeccCCccccccCC
Q psy12044 110 VLQTVPSDTFPDYPSLMKLTLSGNPIKQIKTGAFQPLSYLVTLELSKCGIEVIEDAAFVGLDSLEWLKLDNNKITTISGS 189 (767)
Q Consensus 110 ~Lt~l~p~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~L~~i~~~~~~~l~~L~~L~Ls~N~Lt~ip~~ 189 (767)
.|+.+ ..+..+++|+.|+|++|.++++ ..+..+++|+.|+|++|.|+++.+ +..+++|+.|+|++|.|+.++.
T Consensus 123 ~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i~~l~~- 195 (291)
T 1h6t_A 123 GISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDLRA- 195 (291)
T ss_dssp CCCCC--GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCBCGG-
T ss_pred cCCCC--hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh--hcCCCccCEEECCCCcCCCChh-
Confidence 88876 3577788888888888888877 357778888888888888888766 7778888888888888888764
Q ss_pred CCCCCCcccccCCCCCCCc
Q psy12044 190 NILPTGLHGIDLHHNPWTC 208 (767)
Q Consensus 190 ~~~~~~L~~L~Ls~N~l~C 208 (767)
+..+++|+.|++++|++.+
T Consensus 196 l~~l~~L~~L~l~~n~i~~ 214 (291)
T 1h6t_A 196 LAGLKNLDVLELFSQECLN 214 (291)
T ss_dssp GTTCTTCSEEEEEEEEEEC
T ss_pred hccCCCCCEEECcCCcccC
Confidence 4566788888888887753
No 77
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.64 E-value=1.3e-15 Score=148.86 Aligned_cols=120 Identities=28% Similarity=0.474 Sum_probs=90.9
Q ss_pred CCEEEccCCCCCCCCCCCCCCCCCCcEEECCCCcCcccccCCcCCCCCccEEeccCCCccccchhhhcCCCCCCeeeccC
Q psy12044 101 LVDLDFSHNVLQTVPSDTFPDYPSLMKLTLSGNPIKQIKTGAFQPLSYLVTLELSKCGIEVIEDAAFVGLDSLEWLKLDN 180 (767)
Q Consensus 101 L~~L~Ls~N~Lt~l~p~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~L~~i~~~~~~~l~~L~~L~Ls~ 180 (767)
.+.|++++|.|+.++... .++|+.|+|++|.|+++.+..|..+++|+.|+|++|+|+++++..|..+++|+.|+|++
T Consensus 11 ~~~l~~s~n~l~~ip~~~---~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~ 87 (170)
T 3g39_A 11 GTTVDCSGKSLASVPTGI---PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLND 87 (170)
T ss_dssp TTEEECTTSCCSSCCSCC---CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEEEeCCCCcCccCccC---CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCC
Confidence 456677777776665432 25677777777777777777777777777777777777777777777778888888888
Q ss_pred CccccccCC-CCCCCCcccccCCCCCCCchhh-hhhhhhhhccCC
Q psy12044 181 NKITTISGS-NILPTGLHGIDLHHNPWTCDCL-LIGLRRWLESTK 223 (767)
Q Consensus 181 N~Lt~ip~~-~~~~~~L~~L~Ls~N~l~C~c~-l~~l~~~l~~~~ 223 (767)
|+|+.+++. +..+++|+.|+|++|+|.|+|. +.|+..|+....
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c~~l~~l~~~l~~~~ 132 (170)
T 3g39_A 88 NQLKSIPRGAFDNLKSLTHIWLLNNPWDCACSDILYLSRWISQHP 132 (170)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCBCTTBGGGHHHHHHHHHCG
T ss_pred CccCEeCHHHhcCCCCCCEEEeCCCCCCCCchhHHHHHHHHHhCc
Confidence 888877765 3456788999999999999995 999999988754
No 78
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.64 E-value=9.3e-16 Score=160.68 Aligned_cols=162 Identities=24% Similarity=0.301 Sum_probs=137.4
Q ss_pred EecCCCcccccc-CCCCCccEEEeeCCCCCCCCchhhhccCCCCccEEEccCCCCCccCcccccCCCCCCEEEccCCCCC
Q psy12044 34 ECVNKSLITVVE-GMDPNTQVLDYTGNNLKTLHNEKFQKMGLVNLQKIYLSRCRISVIDSKAFRGLTNLVDLDFSHNVLQ 112 (767)
Q Consensus 34 ~C~~~~L~~iP~-~l~~~L~~L~Ls~N~L~~l~~~~f~~~~L~~L~~L~Ls~N~L~~i~p~~f~~L~~L~~L~Ls~N~Lt 112 (767)
.+....+..++. .-.++|+.|++++|.|+.++ .+.. +++|+.|+|++|.|+++.+ |..+++|++|+|++|+|+
T Consensus 25 ~l~~~~i~~~~~~~~l~~L~~L~l~~n~i~~l~--~l~~--l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L~~N~l~ 98 (263)
T 1xeu_A 25 NLGKQSVTDLVSQKELSGVQNFNGDNSNIQSLA--GMQF--FTNLKELHLSHNQISDLSP--LKDLTKLEELSVNRNRLK 98 (263)
T ss_dssp HHTCSCTTSEECHHHHTTCSEEECTTSCCCCCT--TGGG--CTTCCEEECCSSCCCCCGG--GTTCSSCCEEECCSSCCS
T ss_pred HhcCCCcccccchhhcCcCcEEECcCCCcccch--HHhh--CCCCCEEECCCCccCCChh--hccCCCCCEEECCCCccC
Confidence 344455555552 12578999999999999887 4553 8999999999999999866 999999999999999999
Q ss_pred CCCCCCCCCCCCCcEEECCCCcCcccccCCcCCCCCccEEeccCCCccccchhhhcCCCCCCeeeccCCccccccCCCCC
Q psy12044 113 TVPSDTFPDYPSLMKLTLSGNPIKQIKTGAFQPLSYLVTLELSKCGIEVIEDAAFVGLDSLEWLKLDNNKITTISGSNIL 192 (767)
Q Consensus 113 ~l~p~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~L~~i~~~~~~~l~~L~~L~Ls~N~Lt~ip~~~~~ 192 (767)
++++. .. ++|+.|+|++|.|+++. .+..+++|+.|+|++|.|+++. .+..+++|+.|+|++|.|+.+ ..+..
T Consensus 99 ~l~~~--~~-~~L~~L~L~~N~l~~~~--~l~~l~~L~~L~Ls~N~i~~~~--~l~~l~~L~~L~L~~N~i~~~-~~l~~ 170 (263)
T 1xeu_A 99 NLNGI--PS-ACLSRLFLDNNELRDTD--SLIHLKNLEILSIRNNKLKSIV--MLGFLSKLEVLDLHGNEITNT-GGLTR 170 (263)
T ss_dssp CCTTC--CC-SSCCEEECCSSCCSBSG--GGTTCTTCCEEECTTSCCCBCG--GGGGCTTCCEEECTTSCCCBC-TTSTT
T ss_pred CcCcc--cc-CcccEEEccCCccCCCh--hhcCcccccEEECCCCcCCCCh--HHccCCCCCEEECCCCcCcch-HHhcc
Confidence 98653 33 89999999999999985 4889999999999999999985 588999999999999999988 55667
Q ss_pred CCCcccccCCCCCCCch
Q psy12044 193 PTGLHGIDLHHNPWTCD 209 (767)
Q Consensus 193 ~~~L~~L~Ls~N~l~C~ 209 (767)
+++|+.|++++|++.|.
T Consensus 171 l~~L~~L~l~~N~~~~~ 187 (263)
T 1xeu_A 171 LKKVNWIDLTGQKCVNE 187 (263)
T ss_dssp CCCCCEEEEEEEEEECC
T ss_pred CCCCCEEeCCCCcccCC
Confidence 78999999999998764
No 79
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.63 E-value=3e-16 Score=184.90 Aligned_cols=117 Identities=14% Similarity=0.111 Sum_probs=86.8
Q ss_pred CcccccCCCCCCEEEccCCCCCCC-----------------CCCCCC--CCCCCcEEECCCCcCcccccCCcCCCCCccE
Q psy12044 91 DSKAFRGLTNLVDLDFSHNVLQTV-----------------PSDTFP--DYPSLMKLTLSGNPIKQIKTGAFQPLSYLVT 151 (767)
Q Consensus 91 ~p~~f~~L~~L~~L~Ls~N~Lt~l-----------------~p~~f~--~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~ 151 (767)
+|..|+++++|++|+|++|.|++. .|..+. .+++|+.|+|++|.+.+..|..|.++++|+.
T Consensus 198 ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~ 277 (636)
T 4eco_A 198 VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQL 277 (636)
T ss_dssp ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCE
T ss_pred CCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCE
Confidence 456677777888888888887773 556666 7778888888888777777777777778888
Q ss_pred EeccCCC-ccc-cchhhhcCC------CCCCeeeccCCccccccC--CCCCCCCcccccCCCCCCC
Q psy12044 152 LELSKCG-IEV-IEDAAFVGL------DSLEWLKLDNNKITTISG--SNILPTGLHGIDLHHNPWT 207 (767)
Q Consensus 152 L~Ls~N~-L~~-i~~~~~~~l------~~L~~L~Ls~N~Lt~ip~--~~~~~~~L~~L~Ls~N~l~ 207 (767)
|+|++|. +++ ..|..+..+ ++|+.|+|++|+|+.+|. .+..+++|+.|+|++|.+.
T Consensus 278 L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~ip~~~~l~~l~~L~~L~L~~N~l~ 343 (636)
T 4eco_A 278 INVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLE 343 (636)
T ss_dssp EECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCSSCCCHHHHTTCTTCCEEECCSCCCE
T ss_pred EECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCCccCchhhhccCCCCCEEeCcCCcCc
Confidence 8888776 776 556556555 777788888887777776 5666677777777777766
No 80
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.63 E-value=6.6e-16 Score=176.93 Aligned_cols=145 Identities=25% Similarity=0.286 Sum_probs=133.9
Q ss_pred eEEEecCCCccccccCCCCCccEEEeeCCCCCCCCchhhhccCCCCccEEEccCCCCCccCcccccCCCCCCEEEccCCC
Q psy12044 31 QTVECVNKSLITVVEGMDPNTQVLDYTGNNLKTLHNEKFQKMGLVNLQKIYLSRCRISVIDSKAFRGLTNLVDLDFSHNV 110 (767)
Q Consensus 31 ~~v~C~~~~L~~iP~~l~~~L~~L~Ls~N~L~~l~~~~f~~~~L~~L~~L~Ls~N~L~~i~p~~f~~L~~L~~L~Ls~N~ 110 (767)
+.++|++.++..+|..+++++++|+|++|.|+++.+..|.. +++|+.|+|++|+|+++.|..|.++++|++|+|++|.
T Consensus 3 ~~l~ls~n~l~~ip~~~~~~L~~L~Ls~n~i~~~~~~~~~~--l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~ 80 (520)
T 2z7x_B 3 FLVDRSKNGLIHVPKDLSQKTTILNISQNYISELWTSDILS--LSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNK 80 (520)
T ss_dssp CEEECTTSCCSSCCCSCCTTCSEEECCSSCCCCCCHHHHTT--CTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSC
T ss_pred ceEecCCCCcccccccccccccEEECCCCcccccChhhccc--cccccEEecCCCccCCcChHHhhcccCCCEEecCCCc
Confidence 57999999999999999999999999999999999988884 8999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCCCCCcEEECCCCcCccc-ccCCcCCCCCccEEeccCCCccccchhhhcCCCCC--CeeeccCCcc
Q psy12044 111 LQTVPSDTFPDYPSLMKLTLSGNPIKQI-KTGAFQPLSYLVTLELSKCGIEVIEDAAFVGLDSL--EWLKLDNNKI 183 (767)
Q Consensus 111 Lt~l~p~~f~~l~~L~~L~Ls~N~l~~l-~~~~~~~l~~L~~L~Ls~N~L~~i~~~~~~~l~~L--~~L~Ls~N~L 183 (767)
|+.++.. .+++|++|+|++|.++++ .+..|..+++|+.|+|++|.|++. .|..+.+| +.|+|++|.+
T Consensus 81 l~~lp~~---~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~---~~~~l~~L~L~~L~l~~n~l 150 (520)
T 2z7x_B 81 LVKISCH---PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKS---SVLPIAHLNISKVLLVLGET 150 (520)
T ss_dssp CCEEECC---CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCGG---GGGGGTTSCEEEEEEEECTT
T ss_pred eeecCcc---ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccchh---hccccccceeeEEEeecccc
Confidence 9987654 799999999999999985 467899999999999999999873 46777888 9999999998
No 81
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.63 E-value=1.5e-15 Score=154.75 Aligned_cols=132 Identities=23% Similarity=0.411 Sum_probs=121.0
Q ss_pred cEEEeeCCCCCCCCchhhhccCCCCccEEEccCCCCCccCc-ccccCCCCCCEEEccCCCCCCCCCCCCCCCCCCcEEEC
Q psy12044 52 QVLDYTGNNLKTLHNEKFQKMGLVNLQKIYLSRCRISVIDS-KAFRGLTNLVDLDFSHNVLQTVPSDTFPDYPSLMKLTL 130 (767)
Q Consensus 52 ~~L~Ls~N~L~~l~~~~f~~~~L~~L~~L~Ls~N~L~~i~p-~~f~~L~~L~~L~Ls~N~Lt~l~p~~f~~l~~L~~L~L 130 (767)
+.|++++|.|+.++.... ..++.|+|++|.|+++.+ ..|..+++|+.|+|++|.|+++++..|..+++|+.|+|
T Consensus 14 ~~l~~s~n~l~~iP~~~~-----~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~L 88 (220)
T 2v70_A 14 TTVDCSNQKLNKIPEHIP-----QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILL 88 (220)
T ss_dssp TEEECCSSCCSSCCSCCC-----TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEEC
T ss_pred CEeEeCCCCcccCccCCC-----CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEEC
Confidence 479999999999876442 467899999999999854 56899999999999999999999999999999999999
Q ss_pred CCCcCcccccCCcCCCCCccEEeccCCCccccchhhhcCCCCCCeeeccCCccccccC
Q psy12044 131 SGNPIKQIKTGAFQPLSYLVTLELSKCGIEVIEDAAFVGLDSLEWLKLDNNKITTISG 188 (767)
Q Consensus 131 s~N~l~~l~~~~~~~l~~L~~L~Ls~N~L~~i~~~~~~~l~~L~~L~Ls~N~Lt~ip~ 188 (767)
++|.|+++++..|..+++|+.|+|++|.|+++.+..|..+++|+.|+|++|+|+.+++
T Consensus 89 s~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~ 146 (220)
T 2v70_A 89 TSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAP 146 (220)
T ss_dssp CSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCT
T ss_pred CCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECH
Confidence 9999999999999999999999999999999999999999999999999999998754
No 82
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.62 E-value=5.4e-16 Score=166.08 Aligned_cols=157 Identities=15% Similarity=0.092 Sum_probs=127.2
Q ss_pred CCccEEEeeCCCCCCCCchhh--hccCCCCccEEEccCCCCCccCc----ccccCCCCCCEEEccCCCCCCCCCCCCCCC
Q psy12044 49 PNTQVLDYTGNNLKTLHNEKF--QKMGLVNLQKIYLSRCRISVIDS----KAFRGLTNLVDLDFSHNVLQTVPSDTFPDY 122 (767)
Q Consensus 49 ~~L~~L~Ls~N~L~~l~~~~f--~~~~L~~L~~L~Ls~N~L~~i~p----~~f~~L~~L~~L~Ls~N~Lt~l~p~~f~~l 122 (767)
++|++|+|++|.+.+..+..+ . .+++|+.|+|++|.|++..+ ..+..+++|++|+|++|.|+++++..|..+
T Consensus 91 ~~L~~L~l~~n~l~~~~~~~~~~~--~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l 168 (310)
T 4glp_A 91 SRLKELTLEDLKITGTMPPLPLEA--TGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAF 168 (310)
T ss_dssp SCCCEEEEESCCCBSCCCCCSSSC--CCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCC
T ss_pred CceeEEEeeCCEeccchhhhhhhc--cCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccC
Confidence 569999999999998877776 4 48899999999999987544 345678899999999999999998899999
Q ss_pred CCCcEEECCCCcCcc---ccc-CCcCCCCCccEEeccCCCccccchh---hhcCCCCCCeeeccCCccccc-cCCCCCC-
Q psy12044 123 PSLMKLTLSGNPIKQ---IKT-GAFQPLSYLVTLELSKCGIEVIEDA---AFVGLDSLEWLKLDNNKITTI-SGSNILP- 193 (767)
Q Consensus 123 ~~L~~L~Ls~N~l~~---l~~-~~~~~l~~L~~L~Ls~N~L~~i~~~---~~~~l~~L~~L~Ls~N~Lt~i-p~~~~~~- 193 (767)
++|+.|+|++|++.+ +.. ..+..+++|+.|+|++|.|+.+... .+..+++|+.|+|++|+|+.+ |..+...
T Consensus 169 ~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~ 248 (310)
T 4glp_A 169 PALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCM 248 (310)
T ss_dssp TTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCC
T ss_pred CCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhcc
Confidence 999999999999875 332 2346788999999999999765442 356788999999999999877 5555544
Q ss_pred --CCcccccCCCCCCC
Q psy12044 194 --TGLHGIDLHHNPWT 207 (767)
Q Consensus 194 --~~L~~L~Ls~N~l~ 207 (767)
++|+.|+|++|.+.
T Consensus 249 ~~~~L~~L~Ls~N~l~ 264 (310)
T 4glp_A 249 WSSALNSLNLSFAGLE 264 (310)
T ss_dssp CCTTCCCEECCSSCCC
T ss_pred CcCcCCEEECCCCCCC
Confidence 68999999999887
No 83
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.61 E-value=1.1e-15 Score=148.33 Aligned_cols=144 Identities=22% Similarity=0.259 Sum_probs=124.7
Q ss_pred ccccCCCCCccEEEeeCCCCC-CCCchhhhccCCCCccEEEccCCCCCccCcccccCCCCCCEEEccCCCCCCCCCCCCC
Q psy12044 42 TVVEGMDPNTQVLDYTGNNLK-TLHNEKFQKMGLVNLQKIYLSRCRISVIDSKAFRGLTNLVDLDFSHNVLQTVPSDTFP 120 (767)
Q Consensus 42 ~iP~~l~~~L~~L~Ls~N~L~-~l~~~~f~~~~L~~L~~L~Ls~N~L~~i~p~~f~~L~~L~~L~Ls~N~Lt~l~p~~f~ 120 (767)
.++...+++++.|+|++|.|+ +..+..+.. +++|+.|+|++|.|+.+ ..|..+++|++|+|++|.|++..+..+.
T Consensus 17 ~~~~~~~~~L~~L~l~~n~l~~~~i~~~~~~--l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~ 92 (168)
T 2ell_A 17 ELRNRTPAAVRELVLDNCKSNDGKIEGLTAE--FVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAE 92 (168)
T ss_dssp HHTTSCTTSCSEEECCSCBCBTTBCSSCCGG--GGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHH
T ss_pred hhccCCcccCCEEECCCCCCChhhHHHHHHh--CCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHh
Confidence 445566789999999999998 333444553 88999999999999988 6799999999999999999997777777
Q ss_pred CCCCCcEEECCCCcCccccc-CCcCCCCCccEEeccCCCccccch---hhhcCCCCCCeeeccCCccccccCC
Q psy12044 121 DYPSLMKLTLSGNPIKQIKT-GAFQPLSYLVTLELSKCGIEVIED---AAFVGLDSLEWLKLDNNKITTISGS 189 (767)
Q Consensus 121 ~l~~L~~L~Ls~N~l~~l~~-~~~~~l~~L~~L~Ls~N~L~~i~~---~~~~~l~~L~~L~Ls~N~Lt~ip~~ 189 (767)
.+++|+.|+|++|.|++++. ..+..+++|+.|+|++|.|+++++ ..|..+++|+.|++++|.+..++..
T Consensus 93 ~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~ 165 (168)
T 2ell_A 93 KLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQEAPDS 165 (168)
T ss_dssp HCTTCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSCBCCSS
T ss_pred hCCCCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChhhcccc
Confidence 79999999999999999764 678899999999999999999887 6788999999999999999988754
No 84
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.61 E-value=3.4e-15 Score=175.91 Aligned_cols=153 Identities=19% Similarity=0.226 Sum_probs=101.3
Q ss_pred CccEEEeeCCCCCCCCchhhhccCCCCccEEEccCCCCCccCcccccCCC-------CCCEEEccCCCCCCCCCCCCC--
Q psy12044 50 NTQVLDYTGNNLKTLHNEKFQKMGLVNLQKIYLSRCRISVIDSKAFRGLT-------NLVDLDFSHNVLQTVPSDTFP-- 120 (767)
Q Consensus 50 ~L~~L~Ls~N~L~~l~~~~f~~~~L~~L~~L~Ls~N~L~~i~p~~f~~L~-------~L~~L~Ls~N~Lt~l~p~~f~-- 120 (767)
+|+.|+|++|.|+.++...+.. +++|+.|+|++|.|+.+.+..|..+. +|+.|+|++|.|+.++ ..+.
T Consensus 434 ~L~~L~Ls~N~l~~lp~~~~~~--l~~L~~L~Ls~N~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~lp-~~~~~~ 510 (636)
T 4eco_A 434 NVSSINLSNNQISKFPKELFST--GSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLS-DDFRAT 510 (636)
T ss_dssp CEEEEECCSSCCCSCCTHHHHT--TCCCSEEECCSSCCSBCCSSSSEETTEECTTGGGCCEEECCSSCCCBCC-GGGSTT
T ss_pred CCCEEECcCCccCcCCHHHHcc--CCCCCEEECCCCCCCCcCHHHhccccccccccCCccEEECcCCcCCccC-hhhhhc
Confidence 5666666666666666555542 56677777777777655444444332 6777777777777544 3343
Q ss_pred CCCCCcEEECCCCcCcccccCCcCCCCCccEEec------cCCCccccchhhhcCCCCCCeeeccCCccccccCCCCCCC
Q psy12044 121 DYPSLMKLTLSGNPIKQIKTGAFQPLSYLVTLEL------SKCGIEVIEDAAFVGLDSLEWLKLDNNKITTISGSNILPT 194 (767)
Q Consensus 121 ~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L------s~N~L~~i~~~~~~~l~~L~~L~Ls~N~Lt~ip~~~~~~~ 194 (767)
.+++|+.|+|++|.|+++ |..+..+++|+.|+| ++|.+.+..|..|..+++|+.|+|++|+|+.||..+. +
T Consensus 511 ~l~~L~~L~Ls~N~l~~i-p~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~ip~~~~--~ 587 (636)
T 4eco_A 511 TLPYLVGIDLSYNSFSKF-PTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDIRKVNEKIT--P 587 (636)
T ss_dssp TCTTCCEEECCSSCCSSC-CCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCCCBCCSCCC--T
T ss_pred cCCCcCEEECCCCCCCCc-ChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCcCCccCHhHh--C
Confidence 677777777777777773 445666777777777 4466666666677777777777777777777776644 5
Q ss_pred CcccccCCCCCCCc
Q psy12044 195 GLHGIDLHHNPWTC 208 (767)
Q Consensus 195 ~L~~L~Ls~N~l~C 208 (767)
+|+.|+|++|++.|
T Consensus 588 ~L~~L~Ls~N~l~~ 601 (636)
T 4eco_A 588 NISVLDIKDNPNIS 601 (636)
T ss_dssp TCCEEECCSCTTCE
T ss_pred cCCEEECcCCCCcc
Confidence 77777777777765
No 85
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.61 E-value=3.7e-15 Score=172.71 Aligned_cols=154 Identities=19% Similarity=0.221 Sum_probs=126.3
Q ss_pred CeeEEEecCCCccccccCCCCCccEEEeeCCCCCCCCchhhhccCCCCccEEEccCCCCCccCcccccCCCCCCEEEccC
Q psy12044 29 GKQTVECVNKSLITVVEGMDPNTQVLDYTGNNLKTLHNEKFQKMGLVNLQKIYLSRCRISVIDSKAFRGLTNLVDLDFSH 108 (767)
Q Consensus 29 ~~~~v~C~~~~L~~iP~~l~~~L~~L~Ls~N~L~~l~~~~f~~~~L~~L~~L~Ls~N~L~~i~p~~f~~L~~L~~L~Ls~ 108 (767)
.-..++|++.++..+|..++++|+.|+|++|.|+.++ . .+++|+.|+|++|.|+++ |. |.+ +|+.|+|++
T Consensus 60 ~L~~L~Ls~n~L~~lp~~l~~~L~~L~Ls~N~l~~ip-~-----~l~~L~~L~Ls~N~l~~i-p~-l~~--~L~~L~Ls~ 129 (571)
T 3cvr_A 60 QFSELQLNRLNLSSLPDNLPPQITVLEITQNALISLP-E-----LPASLEYLDACDNRLSTL-PE-LPA--SLKHLDVDN 129 (571)
T ss_dssp TCSEEECCSSCCSCCCSCCCTTCSEEECCSSCCSCCC-C-----CCTTCCEEECCSSCCSCC-CC-CCT--TCCEEECCS
T ss_pred CccEEEeCCCCCCccCHhHcCCCCEEECcCCCCcccc-c-----ccCCCCEEEccCCCCCCc-ch-hhc--CCCEEECCC
Confidence 3578999999999999999999999999999999877 2 268999999999999995 44 655 899999999
Q ss_pred CCCCCCCCCCCCCCCCCcEEECCCCcCcccccCCcCCCCCccEEeccCCCccccchhhhcCCCCCCeeeccCCccccccC
Q psy12044 109 NVLQTVPSDTFPDYPSLMKLTLSGNPIKQIKTGAFQPLSYLVTLELSKCGIEVIEDAAFVGLDSLEWLKLDNNKITTISG 188 (767)
Q Consensus 109 N~Lt~l~p~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~L~~i~~~~~~~l~~L~~L~Ls~N~Lt~ip~ 188 (767)
|.|++++. .+++|+.|+|++|.|++++. .+++|+.|+|++|.|++++. |. ++|+.|+|++|+|+.+|.
T Consensus 130 N~l~~lp~----~l~~L~~L~Ls~N~l~~lp~----~l~~L~~L~Ls~N~L~~lp~--l~--~~L~~L~Ls~N~L~~lp~ 197 (571)
T 3cvr_A 130 NQLTMLPE----LPALLEYINADNNQLTMLPE----LPTSLEVLSVRNNQLTFLPE--LP--ESLEALDVSTNLLESLPA 197 (571)
T ss_dssp SCCSCCCC----CCTTCCEEECCSSCCSCCCC----CCTTCCEEECCSSCCSCCCC--CC--TTCCEEECCSSCCSSCCC
T ss_pred CcCCCCCC----cCccccEEeCCCCccCcCCC----cCCCcCEEECCCCCCCCcch--hh--CCCCEEECcCCCCCchhh
Confidence 99999665 57889999999999988665 46788899999998888665 54 788888888888888877
Q ss_pred CCCCCCCc-------ccccCCCCCCC
Q psy12044 189 SNILPTGL-------HGIDLHHNPWT 207 (767)
Q Consensus 189 ~~~~~~~L-------~~L~Ls~N~l~ 207 (767)
+.. +| +.|+|++|.+.
T Consensus 198 -~~~--~L~~~~~~L~~L~Ls~N~l~ 220 (571)
T 3cvr_A 198 -VPV--RNHHSEETEIFFRCRENRIT 220 (571)
T ss_dssp -CC----------CCEEEECCSSCCC
T ss_pred -HHH--hhhcccccceEEecCCCcce
Confidence 332 66 88888888876
No 86
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.60 E-value=3.1e-15 Score=157.09 Aligned_cols=133 Identities=24% Similarity=0.301 Sum_probs=113.5
Q ss_pred eeEEEecCCCccccccC-C--CCCccEEEeeCCCCCCCCchhhhccCCCCccEEEccCCCCCccCcccccCCCCCCEEEc
Q psy12044 30 KQTVECVNKSLITVVEG-M--DPNTQVLDYTGNNLKTLHNEKFQKMGLVNLQKIYLSRCRISVIDSKAFRGLTNLVDLDF 106 (767)
Q Consensus 30 ~~~v~C~~~~L~~iP~~-l--~~~L~~L~Ls~N~L~~l~~~~f~~~~L~~L~~L~Ls~N~L~~i~p~~f~~L~~L~~L~L 106 (767)
-+.++.++..+..++.. + .++|++|+|++|.|+++.+..|.. +++|+.|+|++|.|+++.+..|.++++|++|+|
T Consensus 30 l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~--l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l 107 (276)
T 2z62_A 30 TKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQS--LSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 107 (276)
T ss_dssp CCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTT--CTTCCEEECTTCCCCEECTTTTTTCTTCCEEEC
T ss_pred ccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccC--CcCCCEEECCCCccCccChhhhcCCccccEEEC
Confidence 46788888888888763 3 578999999999999988888874 889999999999999998888999999999999
Q ss_pred cCCCCCCCCCCCCCCCCCCcEEECCCCcCcccc-cCCcCCCCCccEEeccCCCccccch
Q psy12044 107 SHNVLQTVPSDTFPDYPSLMKLTLSGNPIKQIK-TGAFQPLSYLVTLELSKCGIEVIED 164 (767)
Q Consensus 107 s~N~Lt~l~p~~f~~l~~L~~L~Ls~N~l~~l~-~~~~~~l~~L~~L~Ls~N~L~~i~~ 164 (767)
++|.++++.+..|..+++|+.|+|++|.++.+. +..|..+++|+.|+|++|.|+++++
T Consensus 108 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~ 166 (276)
T 2z62_A 108 VETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYC 166 (276)
T ss_dssp TTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECG
T ss_pred CCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCH
Confidence 999999988878888999999999999998854 6678888888888888888877654
No 87
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.60 E-value=6.3e-15 Score=159.65 Aligned_cols=167 Identities=20% Similarity=0.191 Sum_probs=98.5
Q ss_pred eEEEecCCCcccccc-CCCCCccEEEeeCCCCCCCCchhhhccCCCCccEEEccCCCCCccCcccccCCCCCCEEEccCC
Q psy12044 31 QTVECVNKSLITVVE-GMDPNTQVLDYTGNNLKTLHNEKFQKMGLVNLQKIYLSRCRISVIDSKAFRGLTNLVDLDFSHN 109 (767)
Q Consensus 31 ~~v~C~~~~L~~iP~-~l~~~L~~L~Ls~N~L~~l~~~~f~~~~L~~L~~L~Ls~N~L~~i~p~~f~~L~~L~~L~Ls~N 109 (767)
+.++..+..+..++. .-.++|+.|++++|.+.++.. +. .+++|+.|++++|.+..+.+ +..+++|++|+|++|
T Consensus 158 ~~L~l~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~--~~--~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n 231 (347)
T 4fmz_A 158 NYLTVTESKVKDVTPIANLTDLYSLSLNYNQIEDISP--LA--SLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNN 231 (347)
T ss_dssp CEEECCSSCCCCCGGGGGCTTCSEEECTTSCCCCCGG--GG--GCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSS
T ss_pred cEEEecCCCcCCchhhccCCCCCEEEccCCccccccc--cc--CCCccceeecccCCCCCCch--hhcCCcCCEEEccCC
Confidence 456666666655553 225667777777777776655 33 25666666666666665543 556666666666666
Q ss_pred CCCCCCCCCCCCCCCCcEEECCCCcCcccccCCcCCCCCccEEeccCCCccccchhhhcCCCCCCeeeccCCccccccCC
Q psy12044 110 VLQTVPSDTFPDYPSLMKLTLSGNPIKQIKTGAFQPLSYLVTLELSKCGIEVIEDAAFVGLDSLEWLKLDNNKITTISGS 189 (767)
Q Consensus 110 ~Lt~l~p~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~L~~i~~~~~~~l~~L~~L~Ls~N~Lt~ip~~ 189 (767)
.++.+++ +..+++|+.|+|++|.++.+. .+..+++|+.|+|++|.++++. .+..+++|+.|+|++|.++.+++.
T Consensus 232 ~l~~~~~--~~~l~~L~~L~l~~n~l~~~~--~~~~l~~L~~L~l~~n~l~~~~--~~~~l~~L~~L~L~~n~l~~~~~~ 305 (347)
T 4fmz_A 232 KITDLSP--LANLSQLTWLEIGTNQISDIN--AVKDLTKLKMLNVGSNQISDIS--VLNNLSQLNSLFLNNNQLGNEDME 305 (347)
T ss_dssp CCCCCGG--GTTCTTCCEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCCCCG--GGGGCTTCSEEECCSSCCCGGGHH
T ss_pred ccCCCcc--hhcCCCCCEEECCCCccCCCh--hHhcCCCcCEEEccCCccCCCh--hhcCCCCCCEEECcCCcCCCcChh
Confidence 6666554 556666666666666666552 3555666666666666666552 355566666666666666544322
Q ss_pred -CCCCCCcccccCCCCCCCch
Q psy12044 190 -NILPTGLHGIDLHHNPWTCD 209 (767)
Q Consensus 190 -~~~~~~L~~L~Ls~N~l~C~ 209 (767)
+..+++|+.|+|++|++...
T Consensus 306 ~l~~l~~L~~L~L~~n~l~~~ 326 (347)
T 4fmz_A 306 VIGGLTNLTTLFLSQNHITDI 326 (347)
T ss_dssp HHHTCTTCSEEECCSSSCCCC
T ss_pred HhhccccCCEEEccCCccccc
Confidence 23345566666666665543
No 88
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.60 E-value=2.8e-15 Score=168.50 Aligned_cols=153 Identities=26% Similarity=0.296 Sum_probs=135.9
Q ss_pred CccEEEeeCCCCCCCCchhhhccCCCCccEEEccCCCCCccCcccccCCCCCCEEEccCCCCCCCCCCCCCCCCCCcEEE
Q psy12044 50 NTQVLDYTGNNLKTLHNEKFQKMGLVNLQKIYLSRCRISVIDSKAFRGLTNLVDLDFSHNVLQTVPSDTFPDYPSLMKLT 129 (767)
Q Consensus 50 ~L~~L~Ls~N~L~~l~~~~f~~~~L~~L~~L~Ls~N~L~~i~p~~f~~L~~L~~L~Ls~N~Lt~l~p~~f~~l~~L~~L~ 129 (767)
....++.+++.|+.++.... .+|+.|+|++|+|+.+.+..|.++++|++|+|++|.|+.+.+..|..+++|+.|+
T Consensus 44 ~~~~v~c~~~~l~~iP~~~~-----~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~ 118 (440)
T 3zyj_A 44 QFSKVICVRKNLREVPDGIS-----TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLE 118 (440)
T ss_dssp TSCEEECCSCCCSSCCSCCC-----TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEE
T ss_pred CCCEEEeCCCCcCcCCCCCC-----CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEE
Confidence 35678999999999887543 5799999999999999999999999999999999999999999999999999999
Q ss_pred CCCCcCcccccCCcCCCCCccEEeccCCCccccchhhhcCCCCCCeeeccC-CccccccCCC-CCCCCcccccCCCCCCC
Q psy12044 130 LSGNPIKQIKTGAFQPLSYLVTLELSKCGIEVIEDAAFVGLDSLEWLKLDN-NKITTISGSN-ILPTGLHGIDLHHNPWT 207 (767)
Q Consensus 130 Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~L~~i~~~~~~~l~~L~~L~Ls~-N~Lt~ip~~~-~~~~~L~~L~Ls~N~l~ 207 (767)
|++|.|+.+++..|..+++|+.|+|++|.|+.+++..|..+++|+.|+|++ |.++.++... ..+++|+.|+|++|.+.
T Consensus 119 L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~ 198 (440)
T 3zyj_A 119 LFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR 198 (440)
T ss_dssp CCSSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCS
T ss_pred CCCCcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCc
Confidence 999999999999999999999999999999999988888889999999988 5666776643 35678888888888776
No 89
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.60 E-value=3.6e-15 Score=172.83 Aligned_cols=157 Identities=19% Similarity=0.237 Sum_probs=137.7
Q ss_pred eeEEEecCCCccccccCCCCCccEEEeeCCCCCCCCchhhhccCCCCccEEEccCCCCCccCcccccCCCCCCEEEccCC
Q psy12044 30 KQTVECVNKSLITVVEGMDPNTQVLDYTGNNLKTLHNEKFQKMGLVNLQKIYLSRCRISVIDSKAFRGLTNLVDLDFSHN 109 (767)
Q Consensus 30 ~~~v~C~~~~L~~iP~~l~~~L~~L~Ls~N~L~~l~~~~f~~~~L~~L~~L~Ls~N~L~~i~p~~f~~L~~L~~L~Ls~N 109 (767)
-+.++++++.+..+| .++++|+.|+|++|.|++++. +. .+|+.|+|++|.|+++.. .+++|+.|+|++|
T Consensus 82 L~~L~Ls~N~l~~ip-~~l~~L~~L~Ls~N~l~~ip~--l~----~~L~~L~Ls~N~l~~lp~----~l~~L~~L~Ls~N 150 (571)
T 3cvr_A 82 ITVLEITQNALISLP-ELPASLEYLDACDNRLSTLPE--LP----ASLKHLDVDNNQLTMLPE----LPALLEYINADNN 150 (571)
T ss_dssp CSEEECCSSCCSCCC-CCCTTCCEEECCSSCCSCCCC--CC----TTCCEEECCSSCCSCCCC----CCTTCCEEECCSS
T ss_pred CCEEECcCCCCcccc-cccCCCCEEEccCCCCCCcch--hh----cCCCEEECCCCcCCCCCC----cCccccEEeCCCC
Confidence 567999999999999 888999999999999999776 54 289999999999999644 6899999999999
Q ss_pred CCCCCCCCCCCCCCCCcEEECCCCcCcccccCCcCCCCCccEEeccCCCccccchhhhcCCCCC-------CeeeccCCc
Q psy12044 110 VLQTVPSDTFPDYPSLMKLTLSGNPIKQIKTGAFQPLSYLVTLELSKCGIEVIEDAAFVGLDSL-------EWLKLDNNK 182 (767)
Q Consensus 110 ~Lt~l~p~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~L~~i~~~~~~~l~~L-------~~L~Ls~N~ 182 (767)
.|++++. .+++|+.|+|++|.|++++. |. ++|+.|+|++|.|+.++. |.. +| +.|+|++|+
T Consensus 151 ~l~~lp~----~l~~L~~L~Ls~N~L~~lp~--l~--~~L~~L~Ls~N~L~~lp~--~~~--~L~~~~~~L~~L~Ls~N~ 218 (571)
T 3cvr_A 151 QLTMLPE----LPTSLEVLSVRNNQLTFLPE--LP--ESLEALDVSTNLLESLPA--VPV--RNHHSEETEIFFRCRENR 218 (571)
T ss_dssp CCSCCCC----CCTTCCEEECCSSCCSCCCC--CC--TTCCEEECCSSCCSSCCC--CC----------CCEEEECCSSC
T ss_pred ccCcCCC----cCCCcCEEECCCCCCCCcch--hh--CCCCEEECcCCCCCchhh--HHH--hhhcccccceEEecCCCc
Confidence 9999764 57899999999999999766 55 899999999999998766 443 67 999999999
Q ss_pred cccccCCCCCCCCcccccCCCCCCCch
Q psy12044 183 ITTISGSNILPTGLHGIDLHHNPWTCD 209 (767)
Q Consensus 183 Lt~ip~~~~~~~~L~~L~Ls~N~l~C~ 209 (767)
|+.||..++.+++|+.|+|++|++.+.
T Consensus 219 l~~lp~~l~~l~~L~~L~L~~N~l~~~ 245 (571)
T 3cvr_A 219 ITHIPENILSLDPTCTIILEDNPLSSR 245 (571)
T ss_dssp CCCCCGGGGGSCTTEEEECCSSSCCHH
T ss_pred ceecCHHHhcCCCCCEEEeeCCcCCCc
Confidence 999999888899999999999999864
No 90
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.60 E-value=4.6e-15 Score=167.30 Aligned_cols=154 Identities=27% Similarity=0.250 Sum_probs=137.7
Q ss_pred CccEEEeeCCCCCCCCchhhhccCCCCccEEEccCCCCCccCcccccCCCCCCEEEccCCCCCCCCCCCCCCCCCCcEEE
Q psy12044 50 NTQVLDYTGNNLKTLHNEKFQKMGLVNLQKIYLSRCRISVIDSKAFRGLTNLVDLDFSHNVLQTVPSDTFPDYPSLMKLT 129 (767)
Q Consensus 50 ~L~~L~Ls~N~L~~l~~~~f~~~~L~~L~~L~Ls~N~L~~i~p~~f~~L~~L~~L~Ls~N~Lt~l~p~~f~~l~~L~~L~ 129 (767)
....++.+++.++.++... ..+|+.|+|++|.|+++.+..|.++++|+.|+|++|.|+++.+..|..+++|+.|+
T Consensus 55 ~~~~v~c~~~~l~~iP~~~-----~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ 129 (452)
T 3zyi_A 55 QFSKVVCTRRGLSEVPQGI-----PSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLE 129 (452)
T ss_dssp SSCEEECCSSCCSSCCSCC-----CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEE
T ss_pred CCcEEEECCCCcCccCCCC-----CCCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEE
Confidence 3567899999999888643 35899999999999999999999999999999999999999999999999999999
Q ss_pred CCCCcCcccccCCcCCCCCccEEeccCCCccccchhhhcCCCCCCeeeccC-CccccccCCC-CCCCCcccccCCCCCCC
Q psy12044 130 LSGNPIKQIKTGAFQPLSYLVTLELSKCGIEVIEDAAFVGLDSLEWLKLDN-NKITTISGSN-ILPTGLHGIDLHHNPWT 207 (767)
Q Consensus 130 Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~L~~i~~~~~~~l~~L~~L~Ls~-N~Lt~ip~~~-~~~~~L~~L~Ls~N~l~ 207 (767)
|++|.|+.+++..|..+++|+.|+|++|.|+.+++..|..+++|+.|+|++ |.+..++... ..+.+|+.|+|++|.+.
T Consensus 130 L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~ 209 (452)
T 3zyi_A 130 LFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIK 209 (452)
T ss_dssp CCSSCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCS
T ss_pred CCCCcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccc
Confidence 999999999999999999999999999999999988899999999999998 5777777653 35678889999988876
Q ss_pred c
Q psy12044 208 C 208 (767)
Q Consensus 208 C 208 (767)
.
T Consensus 210 ~ 210 (452)
T 3zyi_A 210 D 210 (452)
T ss_dssp S
T ss_pred c
Confidence 3
No 91
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.60 E-value=2.6e-15 Score=160.79 Aligned_cols=159 Identities=16% Similarity=0.082 Sum_probs=118.0
Q ss_pred CccEEEeeCCCCCCCCch-hhhccCCCCccEEEccCCCCCccCcccc--cCCCCCCEEEccCCCCCCCCC----CCCCCC
Q psy12044 50 NTQVLDYTGNNLKTLHNE-KFQKMGLVNLQKIYLSRCRISVIDSKAF--RGLTNLVDLDFSHNVLQTVPS----DTFPDY 122 (767)
Q Consensus 50 ~L~~L~Ls~N~L~~l~~~-~f~~~~L~~L~~L~Ls~N~L~~i~p~~f--~~L~~L~~L~Ls~N~Lt~l~p----~~f~~l 122 (767)
.++.|.+.++.++...-. .+....+++|+.|+|++|.+.+..|..+ ..+++|++|+|++|.+++..+ ..+..+
T Consensus 65 ~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~ 144 (310)
T 4glp_A 65 RVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLK 144 (310)
T ss_dssp CCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBC
T ss_pred ceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhc
Confidence 467788888877642211 1111125678999999999888888777 888899999999998887544 234568
Q ss_pred CCCcEEECCCCcCcccccCCcCCCCCccEEeccCCCcccc---ch-hhhcCCCCCCeeeccCCccccccCC----CCCCC
Q psy12044 123 PSLMKLTLSGNPIKQIKTGAFQPLSYLVTLELSKCGIEVI---ED-AAFVGLDSLEWLKLDNNKITTISGS----NILPT 194 (767)
Q Consensus 123 ~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~L~~i---~~-~~~~~l~~L~~L~Ls~N~Lt~ip~~----~~~~~ 194 (767)
++|+.|+|++|.++++++..|..+++|+.|+|++|.+.+. .. ..+..+++|+.|+|++|+|+.++.. +..++
T Consensus 145 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~ 224 (310)
T 4glp_A 145 PGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGV 224 (310)
T ss_dssp SCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTC
T ss_pred cCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCC
Confidence 8899999999999888888888889999999999987652 22 2235788899999999988866542 22457
Q ss_pred CcccccCCCCCCCc
Q psy12044 195 GLHGIDLHHNPWTC 208 (767)
Q Consensus 195 ~L~~L~Ls~N~l~C 208 (767)
+|+.|+|++|.+..
T Consensus 225 ~L~~L~Ls~N~l~~ 238 (310)
T 4glp_A 225 QPHSLDLSHNSLRA 238 (310)
T ss_dssp CCSSEECTTSCCCC
T ss_pred CCCEEECCCCCCCc
Confidence 88889999988864
No 92
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.59 E-value=6.8e-16 Score=176.15 Aligned_cols=175 Identities=17% Similarity=0.183 Sum_probs=148.7
Q ss_pred eEEEecCCCccccccCCCCCccEEEeeCCCCCCCCchhhhccCCCCccEEEccCCCCCccCccccc-CCCCCCEEEccCC
Q psy12044 31 QTVECVNKSLITVVEGMDPNTQVLDYTGNNLKTLHNEKFQKMGLVNLQKIYLSRCRISVIDSKAFR-GLTNLVDLDFSHN 109 (767)
Q Consensus 31 ~~v~C~~~~L~~iP~~l~~~L~~L~Ls~N~L~~l~~~~f~~~~L~~L~~L~Ls~N~L~~i~p~~f~-~L~~L~~L~Ls~N 109 (767)
..++.+++.+..++...+++|+.|+|++|.|+++.+..|.. +++|+.|+|++|.|+++.+..|. .+++|+.|+|++|
T Consensus 102 ~~L~L~~N~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~--l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N 179 (487)
T 3oja_A 102 ETLHAANNNISRVSCSRGQGKKNIYLANNKITMLRDLDEGC--RSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYN 179 (487)
T ss_dssp CEEECCSSCCCCEEECCCSSCEEEECCSSCCCSGGGBCGGG--GSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTS
T ss_pred CEEECcCCcCCCCCccccCCCCEEECCCCCCCCCCchhhcC--CCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCC
Confidence 45667777777777777789999999999999999888875 89999999999999998888886 7999999999999
Q ss_pred CCCCCCCCCCCCCCCCcEEECCCCcCcccccCCcCCCCCccEEeccCCCccccchhhhcCCCCCCeeeccCCccc--ccc
Q psy12044 110 VLQTVPSDTFPDYPSLMKLTLSGNPIKQIKTGAFQPLSYLVTLELSKCGIEVIEDAAFVGLDSLEWLKLDNNKIT--TIS 187 (767)
Q Consensus 110 ~Lt~l~p~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~L~~i~~~~~~~l~~L~~L~Ls~N~Lt--~ip 187 (767)
.|+++++ +..+++|+.|+|++|.|+++++. |..+++|+.|+|++|.|++++. .+..+++|+.|+|++|.+. .++
T Consensus 180 ~l~~~~~--~~~l~~L~~L~Ls~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~lp~-~l~~l~~L~~L~l~~N~l~c~~~~ 255 (487)
T 3oja_A 180 FIYDVKG--QVVFAKLKTLDLSSNKLAFMGPE-FQSAAGVTWISLRNNKLVLIEK-ALRFSQNLEHFDLRGNGFHCGTLR 255 (487)
T ss_dssp CCCEEEC--CCCCTTCCEEECCSSCCCEECGG-GGGGTTCSEEECTTSCCCEECT-TCCCCTTCCEEECTTCCBCHHHHH
T ss_pred ccccccc--cccCCCCCEEECCCCCCCCCCHh-HcCCCCccEEEecCCcCcccch-hhccCCCCCEEEcCCCCCcCcchH
Confidence 9999864 34689999999999999999875 8899999999999999998765 5888999999999999998 555
Q ss_pred CCCCCCCCcccccCC-------CCCCCchhh
Q psy12044 188 GSNILPTGLHGIDLH-------HNPWTCDCL 211 (767)
Q Consensus 188 ~~~~~~~~L~~L~Ls-------~N~l~C~c~ 211 (767)
..+...+.|..|++. .|++.|.|.
T Consensus 256 ~~~~~l~~L~~l~~~~~~~~~~~~~~~c~~~ 286 (487)
T 3oja_A 256 DFFSKNQRVQTVAKQTVKKLTGQNEEECTVP 286 (487)
T ss_dssp HHHTTCHHHHHHHHHHHHHHTSSSSCCCSST
T ss_pred HHHHhCCCCcEEeccccccccCCCcccccCC
Confidence 555555667777775 666666653
No 93
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.59 E-value=8.5e-15 Score=150.00 Aligned_cols=128 Identities=23% Similarity=0.245 Sum_probs=104.6
Q ss_pred ccEEEccCCCCCccCcccccCCCCCCEEEccCCCCCCCCCCCCCCCCCCcEEECCCCcCcccccCCcCCCCCccEEeccC
Q psy12044 77 LQKIYLSRCRISVIDSKAFRGLTNLVDLDFSHNVLQTVPSDTFPDYPSLMKLTLSGNPIKQIKTGAFQPLSYLVTLELSK 156 (767)
Q Consensus 77 L~~L~Ls~N~L~~i~p~~f~~L~~L~~L~Ls~N~Lt~l~p~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~ 156 (767)
.+.++.+++.++.+... + .++|+.|+|++|.|+++.+..|..+++|+.|+|++|.|+.+++..|..+++|+.|+|++
T Consensus 21 ~~~v~c~~~~l~~ip~~-~--~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~ 97 (229)
T 3e6j_A 21 GTTVDCRSKRHASVPAG-I--PTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGT 97 (229)
T ss_dssp TTEEECTTSCCSSCCSC-C--CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEeEccCCCcCccCCC-C--CCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCC
Confidence 44566666666665432 2 26777888888888887777788888888888888888888777788888888888888
Q ss_pred CCccccchhhhcCCCCCCeeeccCCccccccCCCCCCCCcccccCCCCCCC
Q psy12044 157 CGIEVIEDAAFVGLDSLEWLKLDNNKITTISGSNILPTGLHGIDLHHNPWT 207 (767)
Q Consensus 157 N~L~~i~~~~~~~l~~L~~L~Ls~N~Lt~ip~~~~~~~~L~~L~Ls~N~l~ 207 (767)
|.|+++++..|..+++|+.|+|++|+|+.+|..+..+++|+.|+|++|.+.
T Consensus 98 N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~l~ 148 (229)
T 3e6j_A 98 NQLTVLPSAVFDRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQNQLK 148 (229)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCCSCCTTGGGCTTCSEEECCSSCCC
T ss_pred CcCCccChhHhCcchhhCeEeccCCcccccCcccccCCCCCEEECCCCcCC
Confidence 888888888888899999999999999999988888899999999999987
No 94
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.59 E-value=1.3e-15 Score=162.26 Aligned_cols=178 Identities=20% Similarity=0.229 Sum_probs=145.6
Q ss_pred eEEEecCCCcccccc--CC--CCCccEEEeeCCCCCCCCchhhhccCCCCccEEEccCCCCCc-cCcccccCCCCCCEEE
Q psy12044 31 QTVECVNKSLITVVE--GM--DPNTQVLDYTGNNLKTLHNEKFQKMGLVNLQKIYLSRCRISV-IDSKAFRGLTNLVDLD 105 (767)
Q Consensus 31 ~~v~C~~~~L~~iP~--~l--~~~L~~L~Ls~N~L~~l~~~~f~~~~L~~L~~L~Ls~N~L~~-i~p~~f~~L~~L~~L~ 105 (767)
+.++.++..+..++. .+ .++|++|+|++|.+.++.+..|.. +++|+.|+|++|.+++ ..|..|..+++|++|+
T Consensus 104 ~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~--l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ 181 (306)
T 2z66_A 104 EHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNG--LSSLEVLKMAGNSFQENFLPDIFTELRNLTFLD 181 (306)
T ss_dssp CEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTT--CTTCCEEECTTCEEGGGEECSCCTTCTTCCEEE
T ss_pred CEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhccc--CcCCCEEECCCCccccccchhHHhhCcCCCEEE
Confidence 445555666665553 22 467888888888888888777774 8899999999999987 5678899999999999
Q ss_pred ccCCCCCCCCCCCCCCCCCCcEEECCCCcCcccccCCcCCCCCccEEeccCCCccccchhhhcCCC-CCCeeeccCCccc
Q psy12044 106 FSHNVLQTVPSDTFPDYPSLMKLTLSGNPIKQIKTGAFQPLSYLVTLELSKCGIEVIEDAAFVGLD-SLEWLKLDNNKIT 184 (767)
Q Consensus 106 Ls~N~Lt~l~p~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~L~~i~~~~~~~l~-~L~~L~Ls~N~Lt 184 (767)
|++|.|+++.+..|..+++|+.|+|++|.++++.+..|..+++|+.|+|++|.|++..+..+..++ +|+.|+|++|.++
T Consensus 182 Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~ 261 (306)
T 2z66_A 182 LSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFA 261 (306)
T ss_dssp CTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEE
T ss_pred CCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCee
Confidence 999999999999999999999999999999999988899999999999999999999998888884 9999999999998
Q ss_pred cccCCCC---CCCCcccccCCCCCCCchh
Q psy12044 185 TISGSNI---LPTGLHGIDLHHNPWTCDC 210 (767)
Q Consensus 185 ~ip~~~~---~~~~L~~L~Ls~N~l~C~c 210 (767)
....... .....+.+.+..+.+.|..
T Consensus 262 ~~c~~~~~~~~l~~~~~~~~~~~~~~C~~ 290 (306)
T 2z66_A 262 CTCEHQSFLQWIKDQRQLLVEVERMECAT 290 (306)
T ss_dssp CSGGGHHHHHHHHHTGGGBSCGGGCBEEE
T ss_pred cccChHHHHHHHHhhhhhhccccccccCC
Confidence 5432111 1134455667778888853
No 95
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.59 E-value=1.1e-15 Score=164.12 Aligned_cols=170 Identities=22% Similarity=0.255 Sum_probs=109.0
Q ss_pred EEecCCCccccccCC---CCCccEEEeeCCCCCCCCchhhhccCCCCccEEEccCCCCCccCcccccCCCCCCEEEccCC
Q psy12044 33 VECVNKSLITVVEGM---DPNTQVLDYTGNNLKTLHNEKFQKMGLVNLQKIYLSRCRISVIDSKAFRGLTNLVDLDFSHN 109 (767)
Q Consensus 33 v~C~~~~L~~iP~~l---~~~L~~L~Ls~N~L~~l~~~~f~~~~L~~L~~L~Ls~N~L~~i~p~~f~~L~~L~~L~Ls~N 109 (767)
.+.+...+..++..+ .++|++|+|++|.|+++.+..|.. +++|+.|+|++|.|++..+ |..+++|++|+|++|
T Consensus 15 ~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~--l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n 90 (317)
T 3o53_A 15 EKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAP--FTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNN 90 (317)
T ss_dssp ESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTT--CTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCSS
T ss_pred eeccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhC--CCcCCEEECCCCcCCcchh--hhhcCCCCEEECcCC
Confidence 344444454444333 346788888888888877777764 7788888888888877654 777777777777777
Q ss_pred CCCCCCCC----------------CCCCCCCCcEEECCCCcCcccccCCcCCCCCccEEeccCCCccccchhhhc-CCCC
Q psy12044 110 VLQTVPSD----------------TFPDYPSLMKLTLSGNPIKQIKTGAFQPLSYLVTLELSKCGIEVIEDAAFV-GLDS 172 (767)
Q Consensus 110 ~Lt~l~p~----------------~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~L~~i~~~~~~-~l~~ 172 (767)
.|+++++. ....+++|+.|+|++|.++++.+..|..+++|+.|+|++|.|+++.+..+. .+++
T Consensus 91 ~l~~l~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~ 170 (317)
T 3o53_A 91 YVQELLVGPSIETLHAANNNISRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDT 170 (317)
T ss_dssp EEEEEEECTTCCEEECCSSCCSEEEECCCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTT
T ss_pred ccccccCCCCcCEEECCCCccCCcCccccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCc
Confidence 76654321 011234566666666666666666666666677777777776666555543 5666
Q ss_pred CCeeeccCCccccccCCCCCCCCcccccCCCCCCC
Q psy12044 173 LEWLKLDNNKITTISGSNILPTGLHGIDLHHNPWT 207 (767)
Q Consensus 173 L~~L~Ls~N~Lt~ip~~~~~~~~L~~L~Ls~N~l~ 207 (767)
|+.|+|++|.|+.++... .+++|+.|+|++|.+.
T Consensus 171 L~~L~L~~N~l~~~~~~~-~l~~L~~L~Ls~N~l~ 204 (317)
T 3o53_A 171 LEHLNLQYNFIYDVKGQV-VFAKLKTLDLSSNKLA 204 (317)
T ss_dssp CCEEECTTSCCCEEECCC-CCTTCCEEECCSSCCC
T ss_pred CCEEECCCCcCccccccc-ccccCCEEECCCCcCC
Confidence 777777777766665433 3556667777776665
No 96
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.59 E-value=2.1e-15 Score=164.31 Aligned_cols=151 Identities=23% Similarity=0.293 Sum_probs=136.3
Q ss_pred EEEeeCCCCCCCCchhhhccCCCCccEEEccCCCCCccCcccccCCCCCCEEEccCCCCCCCCCCCCCCCCCCcEEECCC
Q psy12044 53 VLDYTGNNLKTLHNEKFQKMGLVNLQKIYLSRCRISVIDSKAFRGLTNLVDLDFSHNVLQTVPSDTFPDYPSLMKLTLSG 132 (767)
Q Consensus 53 ~L~Ls~N~L~~l~~~~f~~~~L~~L~~L~Ls~N~L~~i~p~~f~~L~~L~~L~Ls~N~Lt~l~p~~f~~l~~L~~L~Ls~ 132 (767)
..+++++.++.++...+ ++|+.|+|++|.|+.+.+..|.++++|++|+|++|.|+++.+..|..+++|++|+|++
T Consensus 35 ~c~~~~~~l~~iP~~~~-----~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~ 109 (353)
T 2z80_A 35 ICKGSSGSLNSIPSGLT-----EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSY 109 (353)
T ss_dssp EEECCSTTCSSCCTTCC-----TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCS
T ss_pred EeeCCCCCccccccccc-----ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCC
Confidence 47889999999987543 5899999999999999888999999999999999999999999999999999999999
Q ss_pred CcCcccccCCcCCCCCccEEeccCCCccccch-hhhcCCCCCCeeeccCC-ccccccCC-CCCCCCcccccCCCCCCCc
Q psy12044 133 NPIKQIKTGAFQPLSYLVTLELSKCGIEVIED-AAFVGLDSLEWLKLDNN-KITTISGS-NILPTGLHGIDLHHNPWTC 208 (767)
Q Consensus 133 N~l~~l~~~~~~~l~~L~~L~Ls~N~L~~i~~-~~~~~l~~L~~L~Ls~N-~Lt~ip~~-~~~~~~L~~L~Ls~N~l~C 208 (767)
|.++++++..|..+++|+.|+|++|.++.++. ..|..+++|+.|+|++| .++.+++. +..+++|+.|++++|.+..
T Consensus 110 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~ 188 (353)
T 2z80_A 110 NYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQS 188 (353)
T ss_dssp SCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCE
T ss_pred CcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCc
Confidence 99999988889999999999999999999887 67889999999999999 58887654 4567899999999998863
No 97
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.59 E-value=3.2e-15 Score=174.71 Aligned_cols=164 Identities=25% Similarity=0.340 Sum_probs=118.5
Q ss_pred eEEEecCCCcccccc-CCCCCccEEEeeCCCCCCCCchhhhccCCCCccEEEccCCCCCccCcccccCCCCCCEEEccCC
Q psy12044 31 QTVECVNKSLITVVE-GMDPNTQVLDYTGNNLKTLHNEKFQKMGLVNLQKIYLSRCRISVIDSKAFRGLTNLVDLDFSHN 109 (767)
Q Consensus 31 ~~v~C~~~~L~~iP~-~l~~~L~~L~Ls~N~L~~l~~~~f~~~~L~~L~~L~Ls~N~L~~i~p~~f~~L~~L~~L~Ls~N 109 (767)
+.+++++..+..++. ..+++|+.|+|++|.|+++++ +.. +++|+.|+|++|.|+++. .|..+++|+.|+|++|
T Consensus 46 ~~L~l~~n~i~~l~~l~~l~~L~~L~Ls~N~l~~~~~--l~~--l~~L~~L~Ls~N~l~~l~--~l~~l~~L~~L~Ls~N 119 (605)
T 1m9s_A 46 DQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIKP--LTN--LKNLGWLFLDENKIKDLS--SLKDLKKLKSLSLEHN 119 (605)
T ss_dssp CCCBCTTCCCCCCTTGGGCTTCCEEECTTSCCCCCGG--GGG--CTTCCEEECCSSCCCCCT--TSTTCTTCCEEECTTS
T ss_pred CEEECcCCCCCCChHHccCCCCCEEEeeCCCCCCChh--hcc--CCCCCEEECcCCCCCCCh--hhccCCCCCEEEecCC
Confidence 345666666666653 125677888888888877766 443 777888888888777753 4777788888888888
Q ss_pred CCCCCCCCCCCCCCCCcEEECCCCcCcccccCCcCCCCCccEEeccCCCccccchhhhcCCCCCCeeeccCCccccccCC
Q psy12044 110 VLQTVPSDTFPDYPSLMKLTLSGNPIKQIKTGAFQPLSYLVTLELSKCGIEVIEDAAFVGLDSLEWLKLDNNKITTISGS 189 (767)
Q Consensus 110 ~Lt~l~p~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~L~~i~~~~~~~l~~L~~L~Ls~N~Lt~ip~~ 189 (767)
.|+.+. .|..+++|+.|+|++|.|+++ ..|..+++|+.|+|++|.|+++++ |..+++|+.|+|++|.|+.++ .
T Consensus 120 ~l~~l~--~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i~~l~-~ 192 (605)
T 1m9s_A 120 GISDIN--GLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDLR-A 192 (605)
T ss_dssp CCCCCG--GGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCBCG-G
T ss_pred CCCCCc--cccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh--hccCCCCCEEECcCCCCCCCh-H
Confidence 877753 467777888888888887777 357777788888888888877766 777778888888888887774 3
Q ss_pred CCCCCCcccccCCCCCCC
Q psy12044 190 NILPTGLHGIDLHHNPWT 207 (767)
Q Consensus 190 ~~~~~~L~~L~Ls~N~l~ 207 (767)
+..+++|+.|+|++|++.
T Consensus 193 l~~l~~L~~L~L~~N~l~ 210 (605)
T 1m9s_A 193 LAGLKNLDVLELFSQECL 210 (605)
T ss_dssp GTTCTTCSEEECCSEEEE
T ss_pred HccCCCCCEEEccCCcCc
Confidence 455677778888877765
No 98
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.59 E-value=4.2e-15 Score=174.14 Aligned_cols=165 Identities=21% Similarity=0.250 Sum_probs=138.4
Q ss_pred CCCCCceecccCCeeEEEecCCCccccccCCCCCccEEEeeCCCCCCCCchhhhccCCCCccEEEccCCCCCccCccccc
Q psy12044 17 ACPTSCICKWKGGKQTVECVNKSLITVVEGMDPNTQVLDYTGNNLKTLHNEKFQKMGLVNLQKIYLSRCRISVIDSKAFR 96 (767)
Q Consensus 17 ~CP~~C~C~~~g~~~~v~C~~~~L~~iP~~l~~~L~~L~Ls~N~L~~l~~~~f~~~~L~~L~~L~Ls~N~L~~i~p~~f~ 96 (767)
+||..|.|...+ ...++|++.++..+|..++++|+.|+|++|.|+.++. .+++|+.|+|++|+|+.+..
T Consensus 30 ~~~~~~~c~~~~-l~~L~ls~n~L~~lp~~l~~~L~~L~L~~N~l~~lp~------~l~~L~~L~Ls~N~l~~lp~---- 98 (622)
T 3g06_A 30 VVQKMRACLNNG-NAVLNVGESGLTTLPDCLPAHITTLVIPDNNLTSLPA------LPPELRTLEVSGNQLTSLPV---- 98 (622)
T ss_dssp HHHHHHHHHHHC-CCEEECCSSCCSCCCSCCCTTCSEEEECSCCCSCCCC------CCTTCCEEEECSCCCSCCCC----
T ss_pred cCcccccccCCC-CcEEEecCCCcCccChhhCCCCcEEEecCCCCCCCCC------cCCCCCEEEcCCCcCCcCCC----
Confidence 577788887643 5789999999999999999999999999999998876 16899999999999998754
Q ss_pred CCCCCCEEEccCCCCCCCCCCCCCCCCCCcEEECCCCcCcccccCCcCCCCCccEEeccCCCccccchhhhcCCCCCCee
Q psy12044 97 GLTNLVDLDFSHNVLQTVPSDTFPDYPSLMKLTLSGNPIKQIKTGAFQPLSYLVTLELSKCGIEVIEDAAFVGLDSLEWL 176 (767)
Q Consensus 97 ~L~~L~~L~Ls~N~Lt~l~p~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~L~~i~~~~~~~l~~L~~L 176 (767)
.+++|++|+|++|.|++++. .+++|+.|+|++|.|+.++.. +++|+.|+|++|.|++++. .+.+|+.|
T Consensus 99 ~l~~L~~L~Ls~N~l~~l~~----~l~~L~~L~L~~N~l~~lp~~----l~~L~~L~Ls~N~l~~l~~----~~~~L~~L 166 (622)
T 3g06_A 99 LPPGLLELSIFSNPLTHLPA----LPSGLCKLWIFGNQLTSLPVL----PPGLQELSVSDNQLASLPA----LPSELCKL 166 (622)
T ss_dssp CCTTCCEEEECSCCCCCCCC----CCTTCCEEECCSSCCSCCCCC----CTTCCEEECCSSCCSCCCC----CCTTCCEE
T ss_pred CCCCCCEEECcCCcCCCCCC----CCCCcCEEECCCCCCCcCCCC----CCCCCEEECcCCcCCCcCC----ccCCCCEE
Confidence 77999999999999999875 568899999999999987652 4889999999999988753 35678888
Q ss_pred eccCCccccccCCCCCCCCcccccCCCCCCC
Q psy12044 177 KLDNNKITTISGSNILPTGLHGIDLHHNPWT 207 (767)
Q Consensus 177 ~Ls~N~Lt~ip~~~~~~~~L~~L~Ls~N~l~ 207 (767)
+|++|.|+.++ ..+++|+.|+|++|.+.
T Consensus 167 ~L~~N~l~~l~---~~~~~L~~L~Ls~N~l~ 194 (622)
T 3g06_A 167 WAYNNQLTSLP---MLPSGLQELSVSDNQLA 194 (622)
T ss_dssp ECCSSCCSCCC---CCCTTCCEEECCSSCCS
T ss_pred ECCCCCCCCCc---ccCCCCcEEECCCCCCC
Confidence 88888888877 23467888888888776
No 99
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.58 E-value=8e-15 Score=143.86 Aligned_cols=119 Identities=27% Similarity=0.477 Sum_probs=89.7
Q ss_pred CEEEccCCCCCCCCCCCCCCCCCCcEEECCCCcCcccccCCcCCCCCccEEeccCCCccccchhhhcCCCCCCeeeccCC
Q psy12044 102 VDLDFSHNVLQTVPSDTFPDYPSLMKLTLSGNPIKQIKTGAFQPLSYLVTLELSKCGIEVIEDAAFVGLDSLEWLKLDNN 181 (767)
Q Consensus 102 ~~L~Ls~N~Lt~l~p~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~L~~i~~~~~~~l~~L~~L~Ls~N 181 (767)
+.|++++|.|+.++... . ++|+.|+|++|.|+++++..|..+++|+.|+|++|.|+++++..|..+++|+.|+|++|
T Consensus 15 ~~l~~~~n~l~~iP~~~-~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N 91 (174)
T 2r9u_A 15 TLVNCQNIRLASVPAGI-P--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN 91 (174)
T ss_dssp SEEECCSSCCSSCCSCC-C--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred cEEEeCCCCCCccCCCc-C--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC
Confidence 56677777776665432 2 56777777777777777777777777777777777777777766777788888888888
Q ss_pred ccccccCC-CCCCCCcccccCCCCCCCchhh-hhhhhhhhccCC
Q psy12044 182 KITTISGS-NILPTGLHGIDLHHNPWTCDCL-LIGLRRWLESTK 223 (767)
Q Consensus 182 ~Lt~ip~~-~~~~~~L~~L~Ls~N~l~C~c~-l~~l~~~l~~~~ 223 (767)
+|+.++.. +..+++|+.|+|++|+|.|+|. +.|+..|+....
T Consensus 92 ~l~~l~~~~~~~l~~L~~L~L~~N~~~c~~~~~~~l~~~~~~~~ 135 (174)
T 2r9u_A 92 HLKSIPRGAFDNLKSLTHIYLYNNPWDCECRDIMYLRNWVADHT 135 (174)
T ss_dssp CCCCCCTTTTTTCTTCSEEECCSSCBCTTBGGGHHHHHHHHHCG
T ss_pred ccceeCHHHhccccCCCEEEeCCCCcccccccHHHHHHHHHhcc
Confidence 88877776 4456788999999999999996 889999987653
No 100
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.58 E-value=1.1e-14 Score=154.83 Aligned_cols=148 Identities=24% Similarity=0.298 Sum_probs=133.1
Q ss_pred CCCccEEEeeCCCCCCCCchhhhccCCCCccEEEccCCCCCccCcccccCCCCCCEEEccCCCCCCCCCCCCCCCCCCcE
Q psy12044 48 DPNTQVLDYTGNNLKTLHNEKFQKMGLVNLQKIYLSRCRISVIDSKAFRGLTNLVDLDFSHNVLQTVPSDTFPDYPSLMK 127 (767)
Q Consensus 48 ~~~L~~L~Ls~N~L~~l~~~~f~~~~L~~L~~L~Ls~N~L~~i~p~~f~~L~~L~~L~Ls~N~Lt~l~p~~f~~l~~L~~ 127 (767)
.++|+.|++++|.|..+.. +.. +++|+.|+|++|.|+++.+ +..+++|++|+|++|.|++++ .+..+++|+.
T Consensus 45 l~~L~~L~l~~~~i~~~~~--~~~--l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~--~l~~l~~L~~ 116 (291)
T 1h6t_A 45 LNSIDQIIANNSDIKSVQG--IQY--LPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKDLS--SLKDLKKLKS 116 (291)
T ss_dssp HHTCCEEECTTSCCCCCTT--GGG--CTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCGG--GGTTCTTCCE
T ss_pred cCcccEEEccCCCcccChh--Hhc--CCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCCCh--hhccCCCCCE
Confidence 4679999999999998854 553 8999999999999999866 999999999999999999865 3889999999
Q ss_pred EECCCCcCcccccCCcCCCCCccEEeccCCCccccchhhhcCCCCCCeeeccCCccccccCCCCCCCCcccccCCCCCCC
Q psy12044 128 LTLSGNPIKQIKTGAFQPLSYLVTLELSKCGIEVIEDAAFVGLDSLEWLKLDNNKITTISGSNILPTGLHGIDLHHNPWT 207 (767)
Q Consensus 128 L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~L~~i~~~~~~~l~~L~~L~Ls~N~Lt~ip~~~~~~~~L~~L~Ls~N~l~ 207 (767)
|+|++|.++.+. .+..+++|+.|+|++|.|+++ ..+..+++|+.|+|++|+|+.+++ +..+++|+.|+|++|.+.
T Consensus 117 L~L~~n~i~~~~--~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~-l~~l~~L~~L~L~~N~i~ 191 (291)
T 1h6t_A 117 LSLEHNGISDIN--GLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP-LAGLTKLQNLYLSKNHIS 191 (291)
T ss_dssp EECTTSCCCCCG--GGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCC
T ss_pred EECCCCcCCCCh--hhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh-hcCCCccCEEECCCCcCC
Confidence 999999999973 588899999999999999998 468899999999999999999877 667789999999999987
Q ss_pred c
Q psy12044 208 C 208 (767)
Q Consensus 208 C 208 (767)
.
T Consensus 192 ~ 192 (291)
T 1h6t_A 192 D 192 (291)
T ss_dssp B
T ss_pred C
Confidence 4
No 101
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.57 E-value=6.7e-15 Score=146.91 Aligned_cols=147 Identities=20% Similarity=0.240 Sum_probs=127.7
Q ss_pred eeEEEecCCCccccccCC--CCCccEEEeeCCCCCCCCchhhhccCCCCccEEEccCCCCCccCcccccCCCCCCEEEcc
Q psy12044 30 KQTVECVNKSLITVVEGM--DPNTQVLDYTGNNLKTLHNEKFQKMGLVNLQKIYLSRCRISVIDSKAFRGLTNLVDLDFS 107 (767)
Q Consensus 30 ~~~v~C~~~~L~~iP~~l--~~~L~~L~Ls~N~L~~l~~~~f~~~~L~~L~~L~Ls~N~L~~i~p~~f~~L~~L~~L~Ls 107 (767)
-+.+++++..+..+| .+ .++|++|++++|.++.+. .+. .+++|+.|+|++|.+++..+..|..+++|++|+|+
T Consensus 46 L~~L~l~~n~i~~l~-~l~~l~~L~~L~l~~n~~~~~~--~l~--~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls 120 (197)
T 4ezg_A 46 LTYITLANINVTDLT-GIEYAHNIKDLTINNIHATNYN--PIS--GLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDIS 120 (197)
T ss_dssp CCEEEEESSCCSCCT-TGGGCTTCSEEEEESCCCSCCG--GGT--TCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECC
T ss_pred ccEEeccCCCccChH-HHhcCCCCCEEEccCCCCCcch--hhh--cCCCCCEEEeECCccCcccChhhcCCCCCCEEEec
Confidence 467899998998888 44 689999999999887764 455 38999999999999999778889999999999999
Q ss_pred CCCCCCCCCCCCCCCCCCcEEECCCCc-CcccccCCcCCCCCccEEeccCCCccccchhhhcCCCCCCeeeccCCcccc
Q psy12044 108 HNVLQTVPSDTFPDYPSLMKLTLSGNP-IKQIKTGAFQPLSYLVTLELSKCGIEVIEDAAFVGLDSLEWLKLDNNKITT 185 (767)
Q Consensus 108 ~N~Lt~l~p~~f~~l~~L~~L~Ls~N~-l~~l~~~~~~~l~~L~~L~Ls~N~L~~i~~~~~~~l~~L~~L~Ls~N~Lt~ 185 (767)
+|.+++..+..|..+++|+.|+|++|. ++.++ .+..+++|+.|+|++|.|+++. .+..+++|+.|++++|+|..
T Consensus 121 ~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~--~l~~l~~L~~L~l~~n~i~~~~--~l~~l~~L~~L~l~~N~i~~ 195 (197)
T 4ezg_A 121 HSAHDDSILTKINTLPKVNSIDLSYNGAITDIM--PLKTLPELKSLNIQFDGVHDYR--GIEDFPKLNQLYAFSQTIGG 195 (197)
T ss_dssp SSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG--GGGGCSSCCEEECTTBCCCCCT--TGGGCSSCCEEEECBC----
T ss_pred CCccCcHhHHHHhhCCCCCEEEccCCCCccccH--hhcCCCCCCEEECCCCCCcChH--HhccCCCCCEEEeeCcccCC
Confidence 999998777889999999999999998 77775 5889999999999999999976 58899999999999999864
No 102
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.57 E-value=7.9e-15 Score=166.20 Aligned_cols=137 Identities=23% Similarity=0.336 Sum_probs=113.8
Q ss_pred CccEEEccCCCCCccCcccccCCCCCCEEEccCCCCCCCCCCCCCCCCCCcEEECCCCcCcccccCCcCCCCCccEEecc
Q psy12044 76 NLQKIYLSRCRISVIDSKAFRGLTNLVDLDFSHNVLQTVPSDTFPDYPSLMKLTLSGNPIKQIKTGAFQPLSYLVTLELS 155 (767)
Q Consensus 76 ~L~~L~Ls~N~L~~i~p~~f~~L~~L~~L~Ls~N~Lt~l~p~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls 155 (767)
+|+.|+|++|.|+.+.+..|..+++|+.|+|++|.|+++++..|..+++|+.|+|++|.++++.+..|..+++|+.|+|+
T Consensus 225 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 304 (477)
T 2id5_A 225 NLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVS 304 (477)
T ss_dssp CCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECC
T ss_pred cccEEECcCCcccccCHHHhcCccccCeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECC
Confidence 45555666666776666678889999999999999999998899999999999999999999999999999999999999
Q ss_pred CCCccccchhhhcCCCCCCeeeccCCccccccCCCCCCCCcccccCCCCCCCchhhh
Q psy12044 156 KCGIEVIEDAAFVGLDSLEWLKLDNNKITTISGSNILPTGLHGIDLHHNPWTCDCLL 212 (767)
Q Consensus 156 ~N~L~~i~~~~~~~l~~L~~L~Ls~N~Lt~ip~~~~~~~~L~~L~Ls~N~l~C~c~l 212 (767)
+|.|+++++..|..+++|+.|+|++|.+..-....+....+..+.+.++...|.+..
T Consensus 305 ~N~l~~~~~~~~~~l~~L~~L~l~~N~l~c~c~~~~~~~~~~~~~~~~~~~~C~~p~ 361 (477)
T 2id5_A 305 GNQLTTLEESVFHSVGNLETLILDSNPLACDCRLLWVFRRRWRLNFNRQQPTCATPE 361 (477)
T ss_dssp SSCCSCCCGGGBSCGGGCCEEECCSSCEECSGGGHHHHTTTTSSCCTTCCCBEEESG
T ss_pred CCcCceeCHhHcCCCcccCEEEccCCCccCccchHhHHhhhhccccCccCceeCCch
Confidence 999999999999999999999999999985433222223344567788899997654
No 103
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.55 E-value=8.6e-15 Score=177.30 Aligned_cols=173 Identities=18% Similarity=0.162 Sum_probs=148.6
Q ss_pred eeEEEecCCCccc------------------cccCC----CCCccEEEeeCCCCCCCCchhhhccCCCCccEEEccCCC-
Q psy12044 30 KQTVECVNKSLIT------------------VVEGM----DPNTQVLDYTGNNLKTLHNEKFQKMGLVNLQKIYLSRCR- 86 (767)
Q Consensus 30 ~~~v~C~~~~L~~------------------iP~~l----~~~L~~L~Ls~N~L~~l~~~~f~~~~L~~L~~L~Ls~N~- 86 (767)
-+.++.++..+.. +|..+ .++|+.|+|++|.+.+..+..|.+ +++|+.|+|++|+
T Consensus 450 L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~--L~~L~~L~Ls~N~~ 527 (876)
T 4ecn_A 450 LQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYD--LPELQSLNIACNRG 527 (876)
T ss_dssp CCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGG--CSSCCEEECTTCTT
T ss_pred CCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhC--CCCCCEEECcCCCC
Confidence 4678888888887 89876 489999999999999888888885 8999999999998
Q ss_pred CCc-cCcccccCC-------CCCCEEEccCCCCCCCCCC--CCCCCCCCcEEECCCCcCcccccCCcCCCCCccEEeccC
Q psy12044 87 ISV-IDSKAFRGL-------TNLVDLDFSHNVLQTVPSD--TFPDYPSLMKLTLSGNPIKQIKTGAFQPLSYLVTLELSK 156 (767)
Q Consensus 87 L~~-i~p~~f~~L-------~~L~~L~Ls~N~Lt~l~p~--~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~ 156 (767)
|++ .+|..|..+ ++|+.|+|++|.|+.+ |. .|..+++|+.|+|++|.++.++ .|..+++|+.|+|++
T Consensus 528 lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~i-p~~~~l~~L~~L~~L~Ls~N~l~~lp--~~~~L~~L~~L~Ls~ 604 (876)
T 4ecn_A 528 ISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEF-PASASLQKMVKLGLLDCVHNKVRHLE--AFGTNVKLTDLKLDY 604 (876)
T ss_dssp SCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBC-CCHHHHTTCTTCCEEECTTSCCCBCC--CCCTTSEESEEECCS
T ss_pred cccccchHHHHhhhhcccccCCccEEEeeCCcCCcc-CChhhhhcCCCCCEEECCCCCcccch--hhcCCCcceEEECcC
Confidence 998 667655554 4999999999999954 45 7999999999999999999665 799999999999999
Q ss_pred CCccccchhhhcCCCC-CCeeeccCCccccccCCCCCCC--CcccccCCCCCCCc
Q psy12044 157 CGIEVIEDAAFVGLDS-LEWLKLDNNKITTISGSNILPT--GLHGIDLHHNPWTC 208 (767)
Q Consensus 157 N~L~~i~~~~~~~l~~-L~~L~Ls~N~Lt~ip~~~~~~~--~L~~L~Ls~N~l~C 208 (767)
|.|+.+ +..|..+++ |+.|+|++|.|+.+|..+.... +|+.|+|++|.+..
T Consensus 605 N~l~~l-p~~l~~l~~~L~~L~Ls~N~L~~lp~~~~~~~~~~L~~L~Ls~N~l~g 658 (876)
T 4ecn_A 605 NQIEEI-PEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGS 658 (876)
T ss_dssp SCCSCC-CTTSCEECTTCCEEECCSSCCCSCCSCCCTTCSSCEEEEECCSSCTTT
T ss_pred Cccccc-hHHHhhccccCCEEECcCCCCCcCchhhhccccCCCCEEECcCCcCCC
Confidence 999954 456888998 9999999999999987665544 49999999999863
No 104
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.54 E-value=9.3e-15 Score=141.76 Aligned_cols=132 Identities=23% Similarity=0.195 Sum_probs=119.0
Q ss_pred CCCccEEEccCCCCC-ccCcccccCCCCCCEEEccCCCCCCCCCCCCCCCCCCcEEECCCCcCcccccCCcCCCCCccEE
Q psy12044 74 LVNLQKIYLSRCRIS-VIDSKAFRGLTNLVDLDFSHNVLQTVPSDTFPDYPSLMKLTLSGNPIKQIKTGAFQPLSYLVTL 152 (767)
Q Consensus 74 L~~L~~L~Ls~N~L~-~i~p~~f~~L~~L~~L~Ls~N~Lt~l~p~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L 152 (767)
.++|+.|+|++|.|+ +.+|..|..+++|+.|+|++|.|+++ ..|..+++|+.|+|++|.+++..+..+..+++|+.|
T Consensus 23 ~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 100 (168)
T 2ell_A 23 PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHL 100 (168)
T ss_dssp TTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEE
T ss_pred cccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEE
Confidence 578999999999998 56677789999999999999999998 678999999999999999999777777779999999
Q ss_pred eccCCCccccch-hhhcCCCCCCeeeccCCccccccC----CCCCCCCcccccCCCCCCC
Q psy12044 153 ELSKCGIEVIED-AAFVGLDSLEWLKLDNNKITTISG----SNILPTGLHGIDLHHNPWT 207 (767)
Q Consensus 153 ~Ls~N~L~~i~~-~~~~~l~~L~~L~Ls~N~Lt~ip~----~~~~~~~L~~L~Ls~N~l~ 207 (767)
+|++|.|++++. ..+..+++|+.|+|++|.|+.++. .+..+++|+.|++++|.+.
T Consensus 101 ~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~ 160 (168)
T 2ell_A 101 NLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQ 160 (168)
T ss_dssp ECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSC
T ss_pred eccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChh
Confidence 999999999864 678999999999999999999887 5556789999999999875
No 105
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.53 E-value=4.1e-14 Score=160.13 Aligned_cols=169 Identities=25% Similarity=0.335 Sum_probs=143.0
Q ss_pred eeEEEecCCCcccccc-CCCCCccEEEeeCCCCCCCCchhhhccCCCCccEEEccCCCCCccCcccccCCCCCCEEEccC
Q psy12044 30 KQTVECVNKSLITVVE-GMDPNTQVLDYTGNNLKTLHNEKFQKMGLVNLQKIYLSRCRISVIDSKAFRGLTNLVDLDFSH 108 (767)
Q Consensus 30 ~~~v~C~~~~L~~iP~-~l~~~L~~L~Ls~N~L~~l~~~~f~~~~L~~L~~L~Ls~N~L~~i~p~~f~~L~~L~~L~Ls~ 108 (767)
-+.++.++..+..+++ ...++|+.|++++|.++++. .+.. +++|+.|+|++|.+++..+ +..+++|+.|+|++
T Consensus 201 L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~--~l~~--l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~ 274 (466)
T 1o6v_A 201 LESLIATNNQISDITPLGILTNLDELSLNGNQLKDIG--TLAS--LTNLTDLDLANNQISNLAP--LSGLTKLTELKLGA 274 (466)
T ss_dssp CSEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCG--GGGG--CTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCS
T ss_pred CCEEEecCCcccccccccccCCCCEEECCCCCcccch--hhhc--CCCCCEEECCCCccccchh--hhcCCCCCEEECCC
Confidence 4567887777776643 44788999999999999874 3553 8899999999999998865 88999999999999
Q ss_pred CCCCCCCCCCCCCCCCCcEEECCCCcCcccccCCcCCCCCccEEeccCCCccccchhhhcCCCCCCeeeccCCccccccC
Q psy12044 109 NVLQTVPSDTFPDYPSLMKLTLSGNPIKQIKTGAFQPLSYLVTLELSKCGIEVIEDAAFVGLDSLEWLKLDNNKITTISG 188 (767)
Q Consensus 109 N~Lt~l~p~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~L~~i~~~~~~~l~~L~~L~Ls~N~Lt~ip~ 188 (767)
|.++++++ +..+++|+.|+|++|.++++.+ +..+++|+.|+|++|.++++.+ +..+++|+.|++++|.+++++
T Consensus 275 n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~- 347 (466)
T 1o6v_A 275 NQISNISP--LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDVS- 347 (466)
T ss_dssp SCCCCCGG--GTTCTTCSEEECCSSCCSCCGG--GGGCTTCSEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCCCG-
T ss_pred CccCcccc--ccCCCccCeEEcCCCcccCchh--hcCCCCCCEEECcCCcCCCchh--hccCccCCEeECCCCccCCch-
Confidence 99998876 8889999999999999998876 7889999999999999999876 778999999999999999884
Q ss_pred CCCCCCCcccccCCCCCCCchhh
Q psy12044 189 SNILPTGLHGIDLHHNPWTCDCL 211 (767)
Q Consensus 189 ~~~~~~~L~~L~Ls~N~l~C~c~ 211 (767)
.+..+++|+.|++++|++.....
T Consensus 348 ~l~~l~~L~~L~l~~n~l~~~~~ 370 (466)
T 1o6v_A 348 SLANLTNINWLSAGHNQISDLTP 370 (466)
T ss_dssp GGTTCTTCCEEECCSSCCCBCGG
T ss_pred hhccCCCCCEEeCCCCccCccch
Confidence 45567889999999999875443
No 106
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.53 E-value=3.1e-14 Score=166.38 Aligned_cols=148 Identities=24% Similarity=0.301 Sum_probs=134.0
Q ss_pred CCCccEEEeeCCCCCCCCchhhhccCCCCccEEEccCCCCCccCcccccCCCCCCEEEccCCCCCCCCCCCCCCCCCCcE
Q psy12044 48 DPNTQVLDYTGNNLKTLHNEKFQKMGLVNLQKIYLSRCRISVIDSKAFRGLTNLVDLDFSHNVLQTVPSDTFPDYPSLMK 127 (767)
Q Consensus 48 ~~~L~~L~Ls~N~L~~l~~~~f~~~~L~~L~~L~Ls~N~L~~i~p~~f~~L~~L~~L~Ls~N~Lt~l~p~~f~~l~~L~~ 127 (767)
+.+|+.|+|++|.|..++. +.. |++|+.|+|++|.|+++.+ |..+++|+.|+|++|.|++++ .|..+++|+.
T Consensus 42 L~~L~~L~l~~n~i~~l~~--l~~--l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~--~l~~l~~L~~ 113 (605)
T 1m9s_A 42 LNSIDQIIANNSDIKSVQG--IQY--LPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIKDLS--SLKDLKKLKS 113 (605)
T ss_dssp HTTCCCCBCTTCCCCCCTT--GGG--CTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCCCT--TSTTCTTCCE
T ss_pred CCCCCEEECcCCCCCCChH--Hcc--CCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCCCCCh--hhccCCCCCE
Confidence 5789999999999998863 553 8999999999999999876 899999999999999999875 6899999999
Q ss_pred EECCCCcCcccccCCcCCCCCccEEeccCCCccccchhhhcCCCCCCeeeccCCccccccCCCCCCCCcccccCCCCCCC
Q psy12044 128 LTLSGNPIKQIKTGAFQPLSYLVTLELSKCGIEVIEDAAFVGLDSLEWLKLDNNKITTISGSNILPTGLHGIDLHHNPWT 207 (767)
Q Consensus 128 L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~L~~i~~~~~~~l~~L~~L~Ls~N~Lt~ip~~~~~~~~L~~L~Ls~N~l~ 207 (767)
|+|++|.|+.+. .+..+++|+.|+|++|.|+++ ..|..+++|+.|+|++|.|+.+++ +..+++|+.|+|++|.+.
T Consensus 114 L~Ls~N~l~~l~--~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~i~ 188 (605)
T 1m9s_A 114 LSLEHNGISDIN--GLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP-LAGLTKLQNLYLSKNHIS 188 (605)
T ss_dssp EECTTSCCCCCG--GGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCC
T ss_pred EEecCCCCCCCc--cccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh-hccCCCCCEEECcCCCCC
Confidence 999999999874 488999999999999999998 468999999999999999998877 667889999999999987
Q ss_pred c
Q psy12044 208 C 208 (767)
Q Consensus 208 C 208 (767)
.
T Consensus 189 ~ 189 (605)
T 1m9s_A 189 D 189 (605)
T ss_dssp B
T ss_pred C
Confidence 4
No 107
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.52 E-value=1.3e-13 Score=156.05 Aligned_cols=160 Identities=22% Similarity=0.220 Sum_probs=126.7
Q ss_pred eeEEEecCCCccccccCC--CCCccEEEeeCCCCCCCCchhhhccCCCCccEEEccCCCCCccCcccccCCCCCCEEEcc
Q psy12044 30 KQTVECVNKSLITVVEGM--DPNTQVLDYTGNNLKTLHNEKFQKMGLVNLQKIYLSRCRISVIDSKAFRGLTNLVDLDFS 107 (767)
Q Consensus 30 ~~~v~C~~~~L~~iP~~l--~~~L~~L~Ls~N~L~~l~~~~f~~~~L~~L~~L~Ls~N~L~~i~p~~f~~L~~L~~L~Ls 107 (767)
-+.+++++..+..+| .+ .++|++|+|++|.|++++ +. .+++|+.|+|++|.|+++. |..+++|++|+|+
T Consensus 44 L~~L~Ls~n~l~~~~-~l~~l~~L~~L~Ls~n~l~~~~---~~--~l~~L~~L~Ls~N~l~~~~---~~~l~~L~~L~L~ 114 (457)
T 3bz5_A 44 LTSLDCHNSSITDMT-GIEKLTGLTKLICTSNNITTLD---LS--QNTNLTYLACDSNKLTNLD---VTPLTKLTYLNCD 114 (457)
T ss_dssp CCEEECCSSCCCCCT-TGGGCTTCSEEECCSSCCSCCC---CT--TCTTCSEEECCSSCCSCCC---CTTCTTCCEEECC
T ss_pred CCEEEccCCCcccCh-hhcccCCCCEEEccCCcCCeEc---cc--cCCCCCEEECcCCCCceee---cCCCCcCCEEECC
Confidence 467888888888876 34 578999999999998874 54 3788999999999988872 8888999999999
Q ss_pred CCCCCCCCCCCCCCCCCCcEEECCCCcCcccccCCcCCCCCccEEeccCCCccccchhhhcCCCCCCeeeccCCcccccc
Q psy12044 108 HNVLQTVPSDTFPDYPSLMKLTLSGNPIKQIKTGAFQPLSYLVTLELSKCGIEVIEDAAFVGLDSLEWLKLDNNKITTIS 187 (767)
Q Consensus 108 ~N~Lt~l~p~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~L~~i~~~~~~~l~~L~~L~Ls~N~Lt~ip 187 (767)
+|.|++++ +..+++|+.|+|++|.++++. +..+++|+.|+|++|...+.. .+..+++|+.|+|++|+|+.++
T Consensus 115 ~N~l~~l~---~~~l~~L~~L~l~~N~l~~l~---l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~l~ 186 (457)
T 3bz5_A 115 TNKLTKLD---VSQNPLLTYLNCARNTLTEID---VSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSFNKITELD 186 (457)
T ss_dssp SSCCSCCC---CTTCTTCCEEECTTSCCSCCC---CTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECCSSCCCCCC
T ss_pred CCcCCeec---CCCCCcCCEEECCCCccceec---cccCCcCCEEECCCCCccccc--ccccCCcCCEEECCCCccceec
Confidence 99988863 788889999999999988863 677888888888888443333 3667888888888888888876
Q ss_pred CCCCCCCCcccccCCCCCCCc
Q psy12044 188 GSNILPTGLHGIDLHHNPWTC 208 (767)
Q Consensus 188 ~~~~~~~~L~~L~Ls~N~l~C 208 (767)
+...++|+.|++++|.+..
T Consensus 187 --l~~l~~L~~L~l~~N~l~~ 205 (457)
T 3bz5_A 187 --VSQNKLLNRLNCDTNNITK 205 (457)
T ss_dssp --CTTCTTCCEEECCSSCCSC
T ss_pred --cccCCCCCEEECcCCcCCe
Confidence 4556778888888887763
No 108
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.51 E-value=1.1e-13 Score=156.53 Aligned_cols=167 Identities=25% Similarity=0.307 Sum_probs=146.6
Q ss_pred eeEEEecCCCcccccc-CCCCCccEEEeeCCCCCCCCchhhhccCCCCccEEEccCCCCCccCcccccCCCCCCEEEccC
Q psy12044 30 KQTVECVNKSLITVVE-GMDPNTQVLDYTGNNLKTLHNEKFQKMGLVNLQKIYLSRCRISVIDSKAFRGLTNLVDLDFSH 108 (767)
Q Consensus 30 ~~~v~C~~~~L~~iP~-~l~~~L~~L~Ls~N~L~~l~~~~f~~~~L~~L~~L~Ls~N~L~~i~p~~f~~L~~L~~L~Ls~ 108 (767)
-+.++.++..+..++. .-.++|+.|++++|.++++.+ +.. +++|+.|+|++|.++.+ ..+..+++|+.|+|++
T Consensus 179 L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~--~~~--l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~ 252 (466)
T 1o6v_A 179 LERLDISSNKVSDISVLAKLTNLESLIATNNQISDITP--LGI--LTNLDELSLNGNQLKDI--GTLASLTNLTDLDLAN 252 (466)
T ss_dssp CCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCCCGG--GGG--CTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCS
T ss_pred CCEEECcCCcCCCChhhccCCCCCEEEecCCccccccc--ccc--cCCCCEEECCCCCcccc--hhhhcCCCCCEEECCC
Confidence 4678888888777654 126799999999999999876 443 88999999999999987 4588999999999999
Q ss_pred CCCCCCCCCCCCCCCCCcEEECCCCcCcccccCCcCCCCCccEEeccCCCccccchhhhcCCCCCCeeeccCCccccccC
Q psy12044 109 NVLQTVPSDTFPDYPSLMKLTLSGNPIKQIKTGAFQPLSYLVTLELSKCGIEVIEDAAFVGLDSLEWLKLDNNKITTISG 188 (767)
Q Consensus 109 N~Lt~l~p~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~L~~i~~~~~~~l~~L~~L~Ls~N~Lt~ip~ 188 (767)
|.++++.+ +..+++|+.|+|++|.++++++ +..+++|+.|+|++|.++++++ +..+++|+.|+|++|+++++++
T Consensus 253 n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~ 326 (466)
T 1o6v_A 253 NQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP 326 (466)
T ss_dssp SCCCCCGG--GTTCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCGG--GGGCTTCSEEECCSSCCSCCGG
T ss_pred Cccccchh--hhcCCCCCEEECCCCccCcccc--ccCCCccCeEEcCCCcccCchh--hcCCCCCCEEECcCCcCCCchh
Confidence 99999876 8899999999999999999876 8889999999999999999876 7889999999999999998876
Q ss_pred CCCCCCCcccccCCCCCCCch
Q psy12044 189 SNILPTGLHGIDLHHNPWTCD 209 (767)
Q Consensus 189 ~~~~~~~L~~L~Ls~N~l~C~ 209 (767)
+..+++|+.|++++|.+...
T Consensus 327 -~~~l~~L~~L~l~~n~l~~~ 346 (466)
T 1o6v_A 327 -VSSLTKLQRLFFYNNKVSDV 346 (466)
T ss_dssp -GGGCTTCCEEECCSSCCCCC
T ss_pred -hccCccCCEeECCCCccCCc
Confidence 45678999999999999864
No 109
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.51 E-value=1.1e-14 Score=152.64 Aligned_cols=148 Identities=23% Similarity=0.297 Sum_probs=130.1
Q ss_pred CCCccEEEeeCCCCCCCCchhhhccCCCCccEEEccCCCCCccCcccccCCCCCCEEEccCCCCCCCCCCCCCCCCCCcE
Q psy12044 48 DPNTQVLDYTGNNLKTLHNEKFQKMGLVNLQKIYLSRCRISVIDSKAFRGLTNLVDLDFSHNVLQTVPSDTFPDYPSLMK 127 (767)
Q Consensus 48 ~~~L~~L~Ls~N~L~~l~~~~f~~~~L~~L~~L~Ls~N~L~~i~p~~f~~L~~L~~L~Ls~N~Lt~l~p~~f~~l~~L~~ 127 (767)
..++..+++++|.++++. .+.. +++|+.|++++|.|+.+. .+..+++|++|+|++|.|+++++ |..+++|+.
T Consensus 18 l~~l~~l~l~~~~i~~~~--~~~~--l~~L~~L~l~~n~i~~l~--~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~ 89 (263)
T 1xeu_A 18 LANAVKQNLGKQSVTDLV--SQKE--LSGVQNFNGDNSNIQSLA--GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEE 89 (263)
T ss_dssp HHHHHHHHHTCSCTTSEE--CHHH--HTTCSEEECTTSCCCCCT--TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCE
T ss_pred HHHHHHHHhcCCCccccc--chhh--cCcCcEEECcCCCcccch--HHhhCCCCCEEECCCCccCCChh--hccCCCCCE
Confidence 456778899999999887 3443 789999999999999875 68999999999999999999987 899999999
Q ss_pred EECCCCcCcccccCCcCCCCCccEEeccCCCccccchhhhcCCCCCCeeeccCCccccccCCCCCCCCcccccCCCCCCC
Q psy12044 128 LTLSGNPIKQIKTGAFQPLSYLVTLELSKCGIEVIEDAAFVGLDSLEWLKLDNNKITTISGSNILPTGLHGIDLHHNPWT 207 (767)
Q Consensus 128 L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~L~~i~~~~~~~l~~L~~L~Ls~N~Lt~ip~~~~~~~~L~~L~Ls~N~l~ 207 (767)
|+|++|.+++++.. .. ++|+.|+|++|.|+++. .+..+++|+.|+|++|+|+.++ .+..+++|+.|+|++|.+.
T Consensus 90 L~L~~N~l~~l~~~--~~-~~L~~L~L~~N~l~~~~--~l~~l~~L~~L~Ls~N~i~~~~-~l~~l~~L~~L~L~~N~i~ 163 (263)
T 1xeu_A 90 LSVNRNRLKNLNGI--PS-ACLSRLFLDNNELRDTD--SLIHLKNLEILSIRNNKLKSIV-MLGFLSKLEVLDLHGNEIT 163 (263)
T ss_dssp EECCSSCCSCCTTC--CC-SSCCEEECCSSCCSBSG--GGTTCTTCCEEECTTSCCCBCG-GGGGCTTCCEEECTTSCCC
T ss_pred EECCCCccCCcCcc--cc-CcccEEEccCCccCCCh--hhcCcccccEEECCCCcCCCCh-HHccCCCCCEEECCCCcCc
Confidence 99999999998753 33 89999999999999974 4889999999999999999986 4556789999999999997
Q ss_pred ch
Q psy12044 208 CD 209 (767)
Q Consensus 208 C~ 209 (767)
..
T Consensus 164 ~~ 165 (263)
T 1xeu_A 164 NT 165 (263)
T ss_dssp BC
T ss_pred ch
Confidence 53
No 110
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.50 E-value=1.5e-14 Score=137.41 Aligned_cols=127 Identities=21% Similarity=0.274 Sum_probs=65.1
Q ss_pred CCccEEEeeCCCCC-CCCchhhhccCCCCccEEEccCCCCCccCcccccCCCCCCEEEccCCCCCCCCCCCCCCCCCCcE
Q psy12044 49 PNTQVLDYTGNNLK-TLHNEKFQKMGLVNLQKIYLSRCRISVIDSKAFRGLTNLVDLDFSHNVLQTVPSDTFPDYPSLMK 127 (767)
Q Consensus 49 ~~L~~L~Ls~N~L~-~l~~~~f~~~~L~~L~~L~Ls~N~L~~i~p~~f~~L~~L~~L~Ls~N~Lt~l~p~~f~~l~~L~~ 127 (767)
++++.|++++|.++ +..+..+.. +++|+.|+|++|.|+++ ..|..+++|++|+|++|.|++..|..+..+++|+.
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~--l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~ 92 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDE--FEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTH 92 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTT--CTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCE
T ss_pred ccCeEEEccCCcCChhHHHHHHhh--cCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCE
Confidence 44555555555555 222223332 45555555555555554 34555555555555555555544444444555555
Q ss_pred EECCCCcCcccc-cCCcCCCCCccEEeccCCCccccch---hhhcCCCCCCeeecc
Q psy12044 128 LTLSGNPIKQIK-TGAFQPLSYLVTLELSKCGIEVIED---AAFVGLDSLEWLKLD 179 (767)
Q Consensus 128 L~Ls~N~l~~l~-~~~~~~l~~L~~L~Ls~N~L~~i~~---~~~~~l~~L~~L~Ls 179 (767)
|+|++|.+++++ +..+..+++|+.|+|++|.++++++ ..+..+++|+.|+++
T Consensus 93 L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 93 LNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp EECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred EECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence 555555555542 2345555555555555555555544 345555555555543
No 111
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.50 E-value=1.9e-13 Score=147.95 Aligned_cols=167 Identities=20% Similarity=0.282 Sum_probs=133.1
Q ss_pred eeEEEecCCCcccccc-CCCCCccEEEeeCCCCCCCCchhhhccCCCCccEEEccCCCCCccCcccccCCCCCCEEEccC
Q psy12044 30 KQTVECVNKSLITVVE-GMDPNTQVLDYTGNNLKTLHNEKFQKMGLVNLQKIYLSRCRISVIDSKAFRGLTNLVDLDFSH 108 (767)
Q Consensus 30 ~~~v~C~~~~L~~iP~-~l~~~L~~L~Ls~N~L~~l~~~~f~~~~L~~L~~L~Ls~N~L~~i~p~~f~~L~~L~~L~Ls~ 108 (767)
-+.+++.+..+..++. .-.++|++|+|++|.|+.+++ +. .+++|+.|+|++|.++.+ ..|.++++|++|+|++
T Consensus 46 L~~L~l~~~~i~~~~~~~~~~~L~~L~l~~n~i~~~~~--~~--~l~~L~~L~L~~n~i~~~--~~~~~l~~L~~L~l~~ 119 (347)
T 4fmz_A 46 ITKLVVAGEKVASIQGIEYLTNLEYLNLNGNQITDISP--LS--NLVKLTNLYIGTNKITDI--SALQNLTNLRELYLNE 119 (347)
T ss_dssp CSEEECCSSCCCCCTTGGGCTTCCEEECCSSCCCCCGG--GT--TCTTCCEEECCSSCCCCC--GGGTTCTTCSEEECTT
T ss_pred ccEEEEeCCccccchhhhhcCCccEEEccCCccccchh--hh--cCCcCCEEEccCCcccCc--hHHcCCCcCCEEECcC
Confidence 4678888888877764 226789999999999988876 55 388999999999988886 3588899999999999
Q ss_pred CCCCCCCCCCCCCCCCCcEEECCCCcCcccccCCcCCCCCccEEeccCCCccccchhhhcCCCCCCeeeccCCccccccC
Q psy12044 109 NVLQTVPSDTFPDYPSLMKLTLSGNPIKQIKTGAFQPLSYLVTLELSKCGIEVIEDAAFVGLDSLEWLKLDNNKITTISG 188 (767)
Q Consensus 109 N~Lt~l~p~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~L~~i~~~~~~~l~~L~~L~Ls~N~Lt~ip~ 188 (767)
|.++.+++ +..+++|+.|++++|......+ .+..+++|+.|++++|.+..+.+ +..+++|+.|++++|.++.++.
T Consensus 120 n~i~~~~~--~~~l~~L~~L~l~~n~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~--~~~l~~L~~L~l~~n~l~~~~~ 194 (347)
T 4fmz_A 120 DNISDISP--LANLTKMYSLNLGANHNLSDLS-PLSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQIEDISP 194 (347)
T ss_dssp SCCCCCGG--GTTCTTCCEEECTTCTTCCCCG-GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCSEEECTTSCCCCCGG
T ss_pred CcccCchh--hccCCceeEEECCCCCCccccc-chhhCCCCcEEEecCCCcCCchh--hccCCCCCEEEccCCccccccc
Confidence 99888765 7888899999999885544443 37788888888888888888765 7788888888888888887776
Q ss_pred CCCCCCCcccccCCCCCCCc
Q psy12044 189 SNILPTGLHGIDLHHNPWTC 208 (767)
Q Consensus 189 ~~~~~~~L~~L~Ls~N~l~C 208 (767)
+..+.+|+.|++++|.+..
T Consensus 195 -~~~l~~L~~L~l~~n~l~~ 213 (347)
T 4fmz_A 195 -LASLTSLHYFTAYVNQITD 213 (347)
T ss_dssp -GGGCTTCCEEECCSSCCCC
T ss_pred -ccCCCccceeecccCCCCC
Confidence 4456778888888887764
No 112
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.50 E-value=1.5e-13 Score=134.45 Aligned_cols=110 Identities=25% Similarity=0.384 Sum_probs=97.8
Q ss_pred ccEEEccCCCCCccCcccccCCCCCCEEEccCCCCCCCCCCCCCCCCCCcEEECCCCcCcccccCCcCCCCCccEEeccC
Q psy12044 77 LQKIYLSRCRISVIDSKAFRGLTNLVDLDFSHNVLQTVPSDTFPDYPSLMKLTLSGNPIKQIKTGAFQPLSYLVTLELSK 156 (767)
Q Consensus 77 L~~L~Ls~N~L~~i~p~~f~~L~~L~~L~Ls~N~Lt~l~p~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~ 156 (767)
.+.+++++|.++.+... ..++|+.|+|++|.|+++++..|..+++|+.|+|++|.|+++++..|..+++|+.|+|++
T Consensus 9 ~~~l~~~~~~l~~~p~~---~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 85 (177)
T 2o6r_A 9 GTEIRCNSKGLTSVPTG---IPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHE 85 (177)
T ss_dssp TTEEECCSSCCSSCCTT---CCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEEEecCCCCccCCCC---CCCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCC
Confidence 45677777777776432 236899999999999999988899999999999999999999998899999999999999
Q ss_pred CCccccchhhhcCCCCCCeeeccCCccccccCC
Q psy12044 157 CGIEVIEDAAFVGLDSLEWLKLDNNKITTISGS 189 (767)
Q Consensus 157 N~L~~i~~~~~~~l~~L~~L~Ls~N~Lt~ip~~ 189 (767)
|.|+++++..|..+++|+.|+|++|.|+.++..
T Consensus 86 N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~ 118 (177)
T 2o6r_A 86 NKLQSLPNGVFDKLTQLKELALDTNQLKSVPDG 118 (177)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTT
T ss_pred CCccccCHHHhhCCcccCEEECcCCcceEeCHH
Confidence 999999998899999999999999999988764
No 113
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.50 E-value=2.7e-14 Score=135.65 Aligned_cols=128 Identities=20% Similarity=0.142 Sum_probs=113.2
Q ss_pred CCCccEEEccCCCCC-ccCcccccCCCCCCEEEccCCCCCCCCCCCCCCCCCCcEEECCCCcCcccccCCcCCCCCccEE
Q psy12044 74 LVNLQKIYLSRCRIS-VIDSKAFRGLTNLVDLDFSHNVLQTVPSDTFPDYPSLMKLTLSGNPIKQIKTGAFQPLSYLVTL 152 (767)
Q Consensus 74 L~~L~~L~Ls~N~L~-~i~p~~f~~L~~L~~L~Ls~N~Lt~l~p~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L 152 (767)
.++|+.|++++|.++ +..|..|..+++|+.|+|++|.|+++ ..|..+++|+.|+|++|.+++..+..+..+++|+.|
T Consensus 16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L 93 (149)
T 2je0_A 16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHL 93 (149)
T ss_dssp GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEE
T ss_pred CccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEE
Confidence 468999999999999 66677889999999999999999998 678999999999999999999777777789999999
Q ss_pred eccCCCccccc-hhhhcCCCCCCeeeccCCccccccC----CCCCCCCcccccCCC
Q psy12044 153 ELSKCGIEVIE-DAAFVGLDSLEWLKLDNNKITTISG----SNILPTGLHGIDLHH 203 (767)
Q Consensus 153 ~Ls~N~L~~i~-~~~~~~l~~L~~L~Ls~N~Lt~ip~----~~~~~~~L~~L~Ls~ 203 (767)
+|++|.|++++ +..+..+++|+.|+|++|.++.++. .+..+++|+.|++++
T Consensus 94 ~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~d 149 (149)
T 2je0_A 94 NLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGYD 149 (149)
T ss_dssp ECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred ECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCCC
Confidence 99999999974 4678999999999999999998876 344568899888864
No 114
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.49 E-value=3e-13 Score=153.03 Aligned_cols=160 Identities=20% Similarity=0.195 Sum_probs=115.3
Q ss_pred eeEEEecCCCccccccCCCCCccEEEeeCCCCCCCCchhhhccCCCCccEEEccCCCCCccCcccccCCCCCCEEEccCC
Q psy12044 30 KQTVECVNKSLITVVEGMDPNTQVLDYTGNNLKTLHNEKFQKMGLVNLQKIYLSRCRISVIDSKAFRGLTNLVDLDFSHN 109 (767)
Q Consensus 30 ~~~v~C~~~~L~~iP~~l~~~L~~L~Ls~N~L~~l~~~~f~~~~L~~L~~L~Ls~N~L~~i~p~~f~~L~~L~~L~Ls~N 109 (767)
-+.+++++..+..+|-.-.++|++|+|++|.|++++ +. .+++|+.|+|++|.|+++ + |..+++|++|+|++|
T Consensus 66 L~~L~Ls~n~l~~~~~~~l~~L~~L~Ls~N~l~~~~---~~--~l~~L~~L~L~~N~l~~l-~--~~~l~~L~~L~l~~N 137 (457)
T 3bz5_A 66 LTKLICTSNNITTLDLSQNTNLTYLACDSNKLTNLD---VT--PLTKLTYLNCDTNKLTKL-D--VSQNPLLTYLNCARN 137 (457)
T ss_dssp CSEEECCSSCCSCCCCTTCTTCSEEECCSSCCSCCC---CT--TCTTCCEEECCSSCCSCC-C--CTTCTTCCEEECTTS
T ss_pred CCEEEccCCcCCeEccccCCCCCEEECcCCCCceee---cC--CCCcCCEEECCCCcCCee-c--CCCCCcCCEEECCCC
Confidence 467888888888887555788999999999999874 55 388999999999999986 3 888899999999999
Q ss_pred CCCCCCCCCCCCCCCCcEEECCCCcCcccccCCcCCCCCccEEeccCCCccccchhhhcCCCCCCeeeccCCccccccCC
Q psy12044 110 VLQTVPSDTFPDYPSLMKLTLSGNPIKQIKTGAFQPLSYLVTLELSKCGIEVIEDAAFVGLDSLEWLKLDNNKITTISGS 189 (767)
Q Consensus 110 ~Lt~l~p~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~L~~i~~~~~~~l~~L~~L~Ls~N~Lt~ip~~ 189 (767)
.|+++. +..+++|+.|++++|...+.. .+..+++|+.|+|++|.|++++ +..+++|+.|++++|+|+.++
T Consensus 138 ~l~~l~---l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~l~---l~~l~~L~~L~l~~N~l~~~~-- 207 (457)
T 3bz5_A 138 TLTEID---VSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSFNKITELD---VSQNKLLNRLNCDTNNITKLD-- 207 (457)
T ss_dssp CCSCCC---CTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECCSSCCCCCC---CTTCTTCCEEECCSSCCSCCC--
T ss_pred ccceec---cccCCcCCEEECCCCCccccc--ccccCCcCCEEECCCCccceec---cccCCCCCEEECcCCcCCeec--
Confidence 988863 666777777777777433322 2556666777777777666653 555666666666666666552
Q ss_pred CCCCCCcccccCCCCCCC
Q psy12044 190 NILPTGLHGIDLHHNPWT 207 (767)
Q Consensus 190 ~~~~~~L~~L~Ls~N~l~ 207 (767)
+..+++|+.|++++|.+.
T Consensus 208 l~~l~~L~~L~Ls~N~l~ 225 (457)
T 3bz5_A 208 LNQNIQLTFLDCSSNKLT 225 (457)
T ss_dssp CTTCTTCSEEECCSSCCS
T ss_pred cccCCCCCEEECcCCccc
Confidence 334456666666666655
No 115
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.48 E-value=4.6e-14 Score=138.24 Aligned_cols=130 Identities=18% Similarity=0.236 Sum_probs=58.3
Q ss_pred CCccEEEeeCCCCCCCCchhhhccCCCCccEEEccCCCCCccCcccccCCCCCCEEEccCCCCCCCCCCCCCCCCCCcEE
Q psy12044 49 PNTQVLDYTGNNLKTLHNEKFQKMGLVNLQKIYLSRCRISVIDSKAFRGLTNLVDLDFSHNVLQTVPSDTFPDYPSLMKL 128 (767)
Q Consensus 49 ~~L~~L~Ls~N~L~~l~~~~f~~~~L~~L~~L~Ls~N~L~~i~p~~f~~L~~L~~L~Ls~N~Lt~l~p~~f~~l~~L~~L 128 (767)
.+++.|+|++|.|+.++. +.. ..++|+.|+|++|.|+++ ..|..+++|++|+|++|.|+++++..|..+++|+.|
T Consensus 19 ~~L~~L~l~~n~l~~i~~--~~~-~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 93 (176)
T 1a9n_A 19 VRDRELDLRGYKIPVIEN--LGA-TLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTEL 93 (176)
T ss_dssp TSCEEEECTTSCCCSCCC--GGG-GTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEE
T ss_pred CCceEEEeeCCCCchhHH--hhh-cCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCCCEE
Confidence 345555555555554421 111 022455555555555544 234445555555555555554444433444455555
Q ss_pred ECCCCcCccccc-CCcCCCCCccEEeccCCCccccchh---hhcCCCCCCeeeccCCcc
Q psy12044 129 TLSGNPIKQIKT-GAFQPLSYLVTLELSKCGIEVIEDA---AFVGLDSLEWLKLDNNKI 183 (767)
Q Consensus 129 ~Ls~N~l~~l~~-~~~~~l~~L~~L~Ls~N~L~~i~~~---~~~~l~~L~~L~Ls~N~L 183 (767)
+|++|.|+.++. ..+..+++|+.|+|++|.++.++.. .+..+++|+.|+++.|.+
T Consensus 94 ~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~~ 152 (176)
T 1a9n_A 94 ILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVKL 152 (176)
T ss_dssp ECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEECCH
T ss_pred ECCCCcCCcchhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcCCH
Confidence 555554444332 2344444444444444444443322 244444444444444443
No 116
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.47 E-value=2.2e-13 Score=148.36 Aligned_cols=175 Identities=22% Similarity=0.257 Sum_probs=147.4
Q ss_pred eeEEEecCCCccccccCC---CCCccEEEeeCCCCCC-CCchhhhccCCCCccE-EEccCCCCCccCcccccCCCCCCEE
Q psy12044 30 KQTVECVNKSLITVVEGM---DPNTQVLDYTGNNLKT-LHNEKFQKMGLVNLQK-IYLSRCRISVIDSKAFRGLTNLVDL 104 (767)
Q Consensus 30 ~~~v~C~~~~L~~iP~~l---~~~L~~L~Ls~N~L~~-l~~~~f~~~~L~~L~~-L~Ls~N~L~~i~p~~f~~L~~L~~L 104 (767)
-+.++.++..+..||.+. .++|++|+|++|.+.+ ++...|.+ +++|.. +.+..|+|+.+.+.+|.++++|++|
T Consensus 32 l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~--L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L 109 (350)
T 4ay9_X 32 AIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSN--LPKLHEIRIEKANNLLYINPEAFQNLPNLQYL 109 (350)
T ss_dssp CSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCS--CTTCCEEEEEEETTCCEECTTSBCCCTTCCEE
T ss_pred CCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhc--chhhhhhhcccCCcccccCchhhhhccccccc
Confidence 467889999999999864 5789999999999855 66677774 778765 6677899999999999999999999
Q ss_pred EccCCCCCCCCCCCCCCCCCCcEEECCC-CcCcccccCCcCCCC-CccEEeccCCCccccchhhhcCCCCCCeeecc-CC
Q psy12044 105 DFSHNVLQTVPSDTFPDYPSLMKLTLSG-NPIKQIKTGAFQPLS-YLVTLELSKCGIEVIEDAAFVGLDSLEWLKLD-NN 181 (767)
Q Consensus 105 ~Ls~N~Lt~l~p~~f~~l~~L~~L~Ls~-N~l~~l~~~~~~~l~-~L~~L~Ls~N~L~~i~~~~~~~l~~L~~L~Ls-~N 181 (767)
++++|.|+.+++..+....++..|++.+ |.+..++...|..+. .|+.|+|++|.|+.+++..|. ..+|+.|+++ +|
T Consensus 110 ~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i~~~~f~-~~~L~~l~l~~~n 188 (350)
T 4ay9_X 110 LISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAFN-GTQLDELNLSDNN 188 (350)
T ss_dssp EEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEECTTSST-TEEEEEEECTTCT
T ss_pred cccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccCCChhhcc-ccchhHHhhccCC
Confidence 9999999999988888888888898865 688888888888775 588899999999998877664 5678899987 57
Q ss_pred ccccccCCCC-CCCCcccccCCCCCCC
Q psy12044 182 KITTISGSNI-LPTGLHGIDLHHNPWT 207 (767)
Q Consensus 182 ~Lt~ip~~~~-~~~~L~~L~Ls~N~l~ 207 (767)
.++.|+...+ .+++|+.|+|++|.+.
T Consensus 189 ~l~~i~~~~f~~l~~L~~LdLs~N~l~ 215 (350)
T 4ay9_X 189 NLEELPNDVFHGASGPVILDISRTRIH 215 (350)
T ss_dssp TCCCCCTTTTTTEECCSEEECTTSCCC
T ss_pred cccCCCHHHhccCcccchhhcCCCCcC
Confidence 8899987764 5688999999999886
No 117
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.46 E-value=5.1e-13 Score=156.47 Aligned_cols=78 Identities=23% Similarity=0.207 Sum_probs=47.2
Q ss_pred CCCcEEECCCCcCcccccCCcCCCCCccEEeccCCCccccchhhhcCCCCCCeeeccCCccccccCCCCCCCCcccccCC
Q psy12044 123 PSLMKLTLSGNPIKQIKTGAFQPLSYLVTLELSKCGIEVIEDAAFVGLDSLEWLKLDNNKITTISGSNILPTGLHGIDLH 202 (767)
Q Consensus 123 ~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~L~~i~~~~~~~l~~L~~L~Ls~N~Lt~ip~~~~~~~~L~~L~Ls 202 (767)
++|+.|+|++|.|++++ ..+++|+.|+|++|.|+.++. .+++|+.|+|++|+|+.||..+..+++|+.|+|+
T Consensus 221 ~~L~~L~Ls~N~L~~lp----~~l~~L~~L~Ls~N~L~~lp~----~~~~L~~L~Ls~N~L~~lp~~l~~l~~L~~L~L~ 292 (622)
T 3g06_A 221 SGLKELIVSGNRLTSLP----VLPSELKELMVSGNRLTSLPM----LPSGLLSLSVYRNQLTRLPESLIHLSSETTVNLE 292 (622)
T ss_dssp TTCCEEECCSSCCSCCC----CCCTTCCEEECCSSCCSCCCC----CCTTCCEEECCSSCCCSCCGGGGGSCTTCEEECC
T ss_pred CCCCEEEccCCccCcCC----CCCCcCcEEECCCCCCCcCCc----ccccCcEEeCCCCCCCcCCHHHhhccccCEEEec
Confidence 44555555555555543 234556666666666665543 3556666666666666666655556666677777
Q ss_pred CCCCCc
Q psy12044 203 HNPWTC 208 (767)
Q Consensus 203 ~N~l~C 208 (767)
+|++.+
T Consensus 293 ~N~l~~ 298 (622)
T 3g06_A 293 GNPLSE 298 (622)
T ss_dssp SCCCCH
T ss_pred CCCCCC
Confidence 777664
No 118
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.46 E-value=2.5e-13 Score=135.15 Aligned_cols=109 Identities=27% Similarity=0.384 Sum_probs=94.0
Q ss_pred cEEEccCCCCCccCcccccCCCCCCEEEccCCCCCCCCCC-CCCCCCCCcEEECCCCcCcccccCCcCCCCCccEEeccC
Q psy12044 78 QKIYLSRCRISVIDSKAFRGLTNLVDLDFSHNVLQTVPSD-TFPDYPSLMKLTLSGNPIKQIKTGAFQPLSYLVTLELSK 156 (767)
Q Consensus 78 ~~L~Ls~N~L~~i~p~~f~~L~~L~~L~Ls~N~Lt~l~p~-~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~ 156 (767)
+.|++++|.|+.+.. .+. .+|++|+|++|.|+++++. .|..+++|+.|+|++|.|+++.+..|..+++|+.|+|++
T Consensus 11 ~~l~~s~~~l~~ip~-~~~--~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~ 87 (192)
T 1w8a_A 11 TTVDCTGRGLKEIPR-DIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE 87 (192)
T ss_dssp TEEECTTSCCSSCCS-CCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred CEEEcCCCCcCcCcc-CCC--CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCC
Confidence 567777777766543 232 2889999999999998875 588999999999999999999999999999999999999
Q ss_pred CCccccchhhhcCCCCCCeeeccCCccccccCC
Q psy12044 157 CGIEVIEDAAFVGLDSLEWLKLDNNKITTISGS 189 (767)
Q Consensus 157 N~L~~i~~~~~~~l~~L~~L~Ls~N~Lt~ip~~ 189 (767)
|.|+++++..|..+++|+.|+|++|+|+.+.+.
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~ 120 (192)
T 1w8a_A 88 NKIKEISNKMFLGLHQLKTLNLYDNQISCVMPG 120 (192)
T ss_dssp CCCCEECSSSSTTCTTCCEEECCSSCCCEECTT
T ss_pred CcCCccCHHHhcCCCCCCEEECCCCcCCeeCHH
Confidence 999999998899999999999999999987654
No 119
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.45 E-value=7.8e-14 Score=136.56 Aligned_cols=131 Identities=24% Similarity=0.293 Sum_probs=115.2
Q ss_pred CCCCccEEEccCCCCCccCcccccCCC-CCCEEEccCCCCCCCCCCCCCCCCCCcEEECCCCcCcccccCCcCCCCCccE
Q psy12044 73 GLVNLQKIYLSRCRISVIDSKAFRGLT-NLVDLDFSHNVLQTVPSDTFPDYPSLMKLTLSGNPIKQIKTGAFQPLSYLVT 151 (767)
Q Consensus 73 ~L~~L~~L~Ls~N~L~~i~p~~f~~L~-~L~~L~Ls~N~Lt~l~p~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~ 151 (767)
.+.+|+.|+|++|.|+.+ +. +..+. +|+.|+|++|.|+++ ..|..+++|+.|+|++|.|+++++..|..+++|+.
T Consensus 17 ~~~~L~~L~l~~n~l~~i-~~-~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 92 (176)
T 1a9n_A 17 NAVRDRELDLRGYKIPVI-EN-LGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTE 92 (176)
T ss_dssp CTTSCEEEECTTSCCCSC-CC-GGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCE
T ss_pred CcCCceEEEeeCCCCchh-HH-hhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCCCE
Confidence 378999999999999987 44 45554 999999999999998 57899999999999999999998777789999999
Q ss_pred EeccCCCccccch-hhhcCCCCCCeeeccCCccccccCC----CCCCCCcccccCCCCCCC
Q psy12044 152 LELSKCGIEVIED-AAFVGLDSLEWLKLDNNKITTISGS----NILPTGLHGIDLHHNPWT 207 (767)
Q Consensus 152 L~Ls~N~L~~i~~-~~~~~l~~L~~L~Ls~N~Lt~ip~~----~~~~~~L~~L~Ls~N~l~ 207 (767)
|+|++|.|+.++. ..+..+++|+.|+|++|.++.++.. +..+++|+.|++++|...
T Consensus 93 L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~~~ 153 (176)
T 1a9n_A 93 LILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVKLK 153 (176)
T ss_dssp EECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEECCHH
T ss_pred EECCCCcCCcchhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcCCHH
Confidence 9999999988765 4688999999999999999988874 556789999999999865
No 120
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.43 E-value=1.3e-12 Score=147.68 Aligned_cols=156 Identities=19% Similarity=0.223 Sum_probs=110.0
Q ss_pred eeEEEecCCCccccccCCCCCccEEEeeCCCCCCCCchhhhccCCCCccEEEccCCCCCccCcccccCCCCCCEEEccCC
Q psy12044 30 KQTVECVNKSLITVVEGMDPNTQVLDYTGNNLKTLHNEKFQKMGLVNLQKIYLSRCRISVIDSKAFRGLTNLVDLDFSHN 109 (767)
Q Consensus 30 ~~~v~C~~~~L~~iP~~l~~~L~~L~Ls~N~L~~l~~~~f~~~~L~~L~~L~Ls~N~L~~i~p~~f~~L~~L~~L~Ls~N 109 (767)
-+.++|++.++..+|. ++++++.|+|++|.+++++.. +.+|+.|++++|.++++.. + .++|++|+|++|
T Consensus 73 l~~L~l~~~~l~~lp~-~~~~L~~L~l~~n~l~~lp~~------~~~L~~L~l~~n~l~~l~~--~--~~~L~~L~L~~n 141 (454)
T 1jl5_A 73 AHELELNNLGLSSLPE-LPPHLESLVASCNSLTELPEL------PQSLKSLLVDNNNLKALSD--L--PPLLEYLGVSNN 141 (454)
T ss_dssp CSEEECTTSCCSCCCS-CCTTCSEEECCSSCCSSCCCC------CTTCCEEECCSSCCSCCCS--C--CTTCCEEECCSS
T ss_pred CCEEEecCCccccCCC-CcCCCCEEEccCCcCCccccc------cCCCcEEECCCCccCcccC--C--CCCCCEEECcCC
Confidence 3679999999988887 678899999999999986531 3577777777777776532 1 157777777777
Q ss_pred CCCCCCCCCCCCCCCCcEEECCCCcCcccccCCcCCCCCccEEeccCCCccccchhhhcCCCCCCeeeccCCccccccCC
Q psy12044 110 VLQTVPSDTFPDYPSLMKLTLSGNPIKQIKTGAFQPLSYLVTLELSKCGIEVIEDAAFVGLDSLEWLKLDNNKITTISGS 189 (767)
Q Consensus 110 ~Lt~l~p~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~L~~i~~~~~~~l~~L~~L~Ls~N~Lt~ip~~ 189 (767)
.+++++ .|..+++|+.|++++|.+++++.. ..+|+.|+|++|.+++++ .|..+++|+.|++++|++++++..
T Consensus 142 ~l~~lp--~~~~l~~L~~L~l~~N~l~~lp~~----~~~L~~L~L~~n~l~~l~--~~~~l~~L~~L~l~~N~l~~l~~~ 213 (454)
T 1jl5_A 142 QLEKLP--ELQNSSFLKIIDVDNNSLKKLPDL----PPSLEFIAAGNNQLEELP--ELQNLPFLTAIYADNNSLKKLPDL 213 (454)
T ss_dssp CCSSCC--CCTTCTTCCEEECCSSCCSCCCCC----CTTCCEEECCSSCCSSCC--CCTTCTTCCEEECCSSCCSSCCCC
T ss_pred CCCCCc--ccCCCCCCCEEECCCCcCcccCCC----cccccEEECcCCcCCcCc--cccCCCCCCEEECCCCcCCcCCCC
Confidence 777754 377777777777777777765431 246777777777777754 366777777777777777766543
Q ss_pred CCCCCCcccccCCCCCCC
Q psy12044 190 NILPTGLHGIDLHHNPWT 207 (767)
Q Consensus 190 ~~~~~~L~~L~Ls~N~l~ 207 (767)
. .+|+.|++++|.+.
T Consensus 214 ~---~~L~~L~l~~n~l~ 228 (454)
T 1jl5_A 214 P---LSLESIVAGNNILE 228 (454)
T ss_dssp C---TTCCEEECCSSCCS
T ss_pred c---CcccEEECcCCcCC
Confidence 2 46677777777654
No 121
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.42 E-value=7.5e-13 Score=131.94 Aligned_cols=108 Identities=26% Similarity=0.395 Sum_probs=92.3
Q ss_pred cEEEccCCCCCccCcccccCCCCCCEEEccCCCCCCCCCCCCCCCCCCcEEECCCCcCcccccCCcCCCCCccEEeccCC
Q psy12044 78 QKIYLSRCRISVIDSKAFRGLTNLVDLDFSHNVLQTVPSDTFPDYPSLMKLTLSGNPIKQIKTGAFQPLSYLVTLELSKC 157 (767)
Q Consensus 78 ~~L~Ls~N~L~~i~p~~f~~L~~L~~L~Ls~N~Lt~l~p~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N 157 (767)
+.+++++|.|+.+... + ..+|++|+|++|.|+.++ ..|..+++|+.|+|++|.|+++.+..|.++++|+.|+|++|
T Consensus 13 ~~l~~~~~~l~~ip~~-~--~~~l~~L~L~~n~i~~ip-~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N 88 (193)
T 2wfh_A 13 TVVRCSNKGLKVLPKG-I--PRDVTELYLDGNQFTLVP-KELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYN 88 (193)
T ss_dssp TEEECTTSCCSSCCSC-C--CTTCCEEECCSSCCCSCC-GGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEcCCCCCCcCCCC-C--CCCCCEEECCCCcCchhH-HHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCC
Confidence 3566666666655332 2 247888888888888665 67889999999999999999999999999999999999999
Q ss_pred CccccchhhhcCCCCCCeeeccCCccccccCC
Q psy12044 158 GIEVIEDAAFVGLDSLEWLKLDNNKITTISGS 189 (767)
Q Consensus 158 ~L~~i~~~~~~~l~~L~~L~Ls~N~Lt~ip~~ 189 (767)
.|+++++..|..+++|+.|+|++|.|+.++..
T Consensus 89 ~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~ 120 (193)
T 2wfh_A 89 RLRCIPPRTFDGLKSLRLLSLHGNDISVVPEG 120 (193)
T ss_dssp CCCBCCTTTTTTCTTCCEEECCSSCCCBCCTT
T ss_pred ccCEeCHHHhCCCCCCCEEECCCCCCCeeChh
Confidence 99999999999999999999999999988764
No 122
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.41 E-value=2.2e-14 Score=158.10 Aligned_cols=157 Identities=17% Similarity=0.176 Sum_probs=73.4
Q ss_pred CCccEEEeeCCCCCCC----CchhhhccCCCCccEEEccCCCCCccCccccc----CC---------CCCCEEEccCCCC
Q psy12044 49 PNTQVLDYTGNNLKTL----HNEKFQKMGLVNLQKIYLSRCRISVIDSKAFR----GL---------TNLVDLDFSHNVL 111 (767)
Q Consensus 49 ~~L~~L~Ls~N~L~~l----~~~~f~~~~L~~L~~L~Ls~N~L~~i~p~~f~----~L---------~~L~~L~Ls~N~L 111 (767)
++|++|+|++|.|+.. .+..+.. +++|+.|+|++|.|+...+..|. .+ ++|++|+|++|.|
T Consensus 94 ~~L~~L~Ls~n~l~~~~~~~l~~~l~~--~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l 171 (386)
T 2ca6_A 94 PKLHTVRLSDNAFGPTAQEPLIDFLSK--HTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRL 171 (386)
T ss_dssp TTCCEEECCSCCCCTTTHHHHHHHHHH--CTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCC
T ss_pred CcccEEECCCCcCCHHHHHHHHHHHHh--CCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCC
Confidence 5566666666666552 2223332 45566666666555433222222 22 5555555555555
Q ss_pred CC-CCC---CCCCCCCCCcEEECCCCcCc--c---cccCCcCCCCCccEEeccCCCcc----ccchhhhcCCCCCCeeec
Q psy12044 112 QT-VPS---DTFPDYPSLMKLTLSGNPIK--Q---IKTGAFQPLSYLVTLELSKCGIE----VIEDAAFVGLDSLEWLKL 178 (767)
Q Consensus 112 t~-l~p---~~f~~l~~L~~L~Ls~N~l~--~---l~~~~~~~l~~L~~L~Ls~N~L~----~i~~~~~~~l~~L~~L~L 178 (767)
+. ..+ ..|..+++|+.|+|++|.|+ + +.+..+..+++|+.|+|++|.|+ ...+..+..+++|+.|+|
T Consensus 172 ~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L 251 (386)
T 2ca6_A 172 ENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGL 251 (386)
T ss_dssp TGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEEC
T ss_pred CcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEEC
Confidence 41 111 12334455555555555554 1 22224444555555555555553 223334445555555555
Q ss_pred cCCccccc-----cCCC--CCCCCcccccCCCCCCC
Q psy12044 179 DNNKITTI-----SGSN--ILPTGLHGIDLHHNPWT 207 (767)
Q Consensus 179 s~N~Lt~i-----p~~~--~~~~~L~~L~Ls~N~l~ 207 (767)
++|.|+.. +..+ ...++|+.|+|++|.+.
T Consensus 252 ~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~ 287 (386)
T 2ca6_A 252 NDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIE 287 (386)
T ss_dssp TTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCB
T ss_pred CCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCC
Confidence 55555432 2211 11344555555555554
No 123
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.41 E-value=2.3e-12 Score=145.65 Aligned_cols=159 Identities=20% Similarity=0.201 Sum_probs=120.9
Q ss_pred eeEEEecCCCccccccCCCCCccEEEeeCCCCCCCCchhhhccCCCCccEEEccCCCCCccCcccccCCCCCCEEEccCC
Q psy12044 30 KQTVECVNKSLITVVEGMDPNTQVLDYTGNNLKTLHNEKFQKMGLVNLQKIYLSRCRISVIDSKAFRGLTNLVDLDFSHN 109 (767)
Q Consensus 30 ~~~v~C~~~~L~~iP~~l~~~L~~L~Ls~N~L~~l~~~~f~~~~L~~L~~L~Ls~N~L~~i~p~~f~~L~~L~~L~Ls~N 109 (767)
-+.++.++..+..+|.. +.+|+.|++++|.+++++.. .++|+.|+|++|.++++ | .|.++++|++|++++|
T Consensus 93 L~~L~l~~n~l~~lp~~-~~~L~~L~l~~n~l~~l~~~------~~~L~~L~L~~n~l~~l-p-~~~~l~~L~~L~l~~N 163 (454)
T 1jl5_A 93 LESLVASCNSLTELPEL-PQSLKSLLVDNNNLKALSDL------PPLLEYLGVSNNQLEKL-P-ELQNSSFLKIIDVDNN 163 (454)
T ss_dssp CSEEECCSSCCSSCCCC-CTTCCEEECCSSCCSCCCSC------CTTCCEEECCSSCCSSC-C-CCTTCTTCCEEECCSS
T ss_pred CCEEEccCCcCCccccc-cCCCcEEECCCCccCcccCC------CCCCCEEECcCCCCCCC-c-ccCCCCCCCEEECCCC
Confidence 46788888888888764 47889999999988876531 25788889998888885 4 4888888999999888
Q ss_pred CCCCCCCCCCCCCCCCcEEECCCCcCcccccCCcCCCCCccEEeccCCCccccchhhhcCCCCCCeeeccCCccccccCC
Q psy12044 110 VLQTVPSDTFPDYPSLMKLTLSGNPIKQIKTGAFQPLSYLVTLELSKCGIEVIEDAAFVGLDSLEWLKLDNNKITTISGS 189 (767)
Q Consensus 110 ~Lt~l~p~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~L~~i~~~~~~~l~~L~~L~Ls~N~Lt~ip~~ 189 (767)
.+++++. . ..+|+.|+|++|.+++++ .|..+++|+.|++++|.+++++.. ..+|+.|++++|.++.+|.
T Consensus 164 ~l~~lp~-~---~~~L~~L~L~~n~l~~l~--~~~~l~~L~~L~l~~N~l~~l~~~----~~~L~~L~l~~n~l~~lp~- 232 (454)
T 1jl5_A 164 SLKKLPD-L---PPSLEFIAAGNNQLEELP--ELQNLPFLTAIYADNNSLKKLPDL----PLSLESIVAGNNILEELPE- 232 (454)
T ss_dssp CCSCCCC-C---CTTCCEEECCSSCCSSCC--CCTTCTTCCEEECCSSCCSSCCCC----CTTCCEEECCSSCCSSCCC-
T ss_pred cCcccCC-C---cccccEEECcCCcCCcCc--cccCCCCCCEEECCCCcCCcCCCC----cCcccEEECcCCcCCcccc-
Confidence 8887653 2 257888888888888864 478888888888888888875431 2577888888888877773
Q ss_pred CCCCCCcccccCCCCCCCc
Q psy12044 190 NILPTGLHGIDLHHNPWTC 208 (767)
Q Consensus 190 ~~~~~~L~~L~Ls~N~l~C 208 (767)
+..+++|+.|++++|.+..
T Consensus 233 ~~~l~~L~~L~l~~N~l~~ 251 (454)
T 1jl5_A 233 LQNLPFLTTIYADNNLLKT 251 (454)
T ss_dssp CTTCTTCCEEECCSSCCSS
T ss_pred cCCCCCCCEEECCCCcCCc
Confidence 5566777888888877763
No 124
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=99.38 E-value=6.6e-13 Score=123.91 Aligned_cols=55 Identities=38% Similarity=0.709 Sum_probs=47.1
Q ss_pred ccCCCCCCCchhhhhhhhhhhccCCCC-CccCCCCCCCCCCCCCcccccccccccC
Q psy12044 199 IDLHHNPWTCDCLLIGLRRWLESTKTP-MAIDPICSVPPRLSSVTIKQLSIDELAC 253 (767)
Q Consensus 199 L~Ls~N~l~C~c~l~~l~~~l~~~~~~-~~~~~~C~~p~~l~g~~i~~l~~~~l~C 253 (767)
|+|++|+|.|||.+.|+..|+...... ......|..|..++|..+.++...++.|
T Consensus 60 L~L~~NP~~CdC~l~~l~~wl~~~~~~~~~~~~~C~~P~~l~g~~l~~l~~~~l~c 115 (130)
T 3rfe_A 60 AHLGANPWRCDCRLVPLRAWLAGRPERAPYRDLRCVAPPALRGRLLPYLAEDELRA 115 (130)
T ss_dssp EECCSSCCBCSGGGHHHHHHHHTSSCSGGGTTCBCCBSTTTTTCBGGGCCHHHHHH
T ss_pred EEecCCCeeccCccHHHHHHHHhCcccccccCcEeCcChHHcCCCcccCCHHHhhC
Confidence 378899999999999999999876532 2467899999999999999999888875
No 125
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.38 E-value=2e-13 Score=163.08 Aligned_cols=117 Identities=16% Similarity=0.124 Sum_probs=74.4
Q ss_pred chhhhccCCCCccEEEccCCCCCccCcccccCCCCCCEEEccCCCCCCCCCCCCCCCCCCcEEECCCCcCcccccCCcCC
Q psy12044 66 NEKFQKMGLVNLQKIYLSRCRISVIDSKAFRGLTNLVDLDFSHNVLQTVPSDTFPDYPSLMKLTLSGNPIKQIKTGAFQP 145 (767)
Q Consensus 66 ~~~f~~~~L~~L~~L~Ls~N~L~~i~p~~f~~L~~L~~L~Ls~N~Lt~l~p~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~ 145 (767)
+..|. .+.+|+.|+|++|.|..+.+. +.++++|++|+|++|.|+.+ |..|..|++|+.|+|++|.|+.+ |..|..
T Consensus 217 ~~~~~--~l~~L~~L~Ls~n~l~~l~~~-~~~l~~L~~L~Ls~N~l~~l-p~~~~~l~~L~~L~Ls~N~l~~l-p~~~~~ 291 (727)
T 4b8c_D 217 KDSKY--DDQLWHALDLSNLQIFNISAN-IFKYDFLTRLYLNGNSLTEL-PAEIKNLSNLRVLDLSHNRLTSL-PAELGS 291 (727)
T ss_dssp -------CCCCCCEEECTTSCCSCCCGG-GGGCCSCSCCBCTTSCCSCC-CGGGGGGTTCCEEECTTSCCSSC-CSSGGG
T ss_pred hhhhc--cCCCCcEEECCCCCCCCCChh-hcCCCCCCEEEeeCCcCccc-ChhhhCCCCCCEEeCcCCcCCcc-ChhhcC
Confidence 44444 266777777777777755433 44677777777777777743 35566777777777777777754 445667
Q ss_pred CCCccEEeccCCCccccchhhhcCCCCCCeeeccCCccccccC
Q psy12044 146 LSYLVTLELSKCGIEVIEDAAFVGLDSLEWLKLDNNKITTISG 188 (767)
Q Consensus 146 l~~L~~L~Ls~N~L~~i~~~~~~~l~~L~~L~Ls~N~Lt~ip~ 188 (767)
+++|+.|+|++|.|+.++. .|..+++|+.|+|++|.|+++++
T Consensus 292 l~~L~~L~L~~N~l~~lp~-~~~~l~~L~~L~L~~N~l~~~~p 333 (727)
T 4b8c_D 292 CFQLKYFYFFDNMVTTLPW-EFGNLCNLQFLGVEGNPLEKQFL 333 (727)
T ss_dssp GTTCSEEECCSSCCCCCCS-STTSCTTCCCEECTTSCCCSHHH
T ss_pred CCCCCEEECCCCCCCccCh-hhhcCCCccEEeCCCCccCCCCh
Confidence 7777777777777765544 36777777777777777765433
No 126
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.38 E-value=4e-13 Score=160.53 Aligned_cols=157 Identities=18% Similarity=0.192 Sum_probs=100.0
Q ss_pred CCccEEEeeCCCCCCCCchhhhccCCCC--ccEEEccCCCCCccCcccccCCCCCCEEEccCCCCCCCCCCCCCCCCCCc
Q psy12044 49 PNTQVLDYTGNNLKTLHNEKFQKMGLVN--LQKIYLSRCRISVIDSKAFRGLTNLVDLDFSHNVLQTVPSDTFPDYPSLM 126 (767)
Q Consensus 49 ~~L~~L~Ls~N~L~~l~~~~f~~~~L~~--L~~L~Ls~N~L~~i~p~~f~~L~~L~~L~Ls~N~Lt~l~p~~f~~l~~L~ 126 (767)
+.++.|+|.+|.+..+....+..+.|.+ |..+++..|.+. +.+..|..+.+|+.|+|++|.|..+++. +..+++|+
T Consensus 173 ~~~~~l~L~~n~~~~~~~~~l~~l~Ls~~~i~~~~~~~n~~~-~~~~~~~~l~~L~~L~Ls~n~l~~l~~~-~~~l~~L~ 250 (727)
T 4b8c_D 173 PLTPKIELFANGKDEANQALLQHKKLSQYSIDEDDDIENRMV-MPKDSKYDDQLWHALDLSNLQIFNISAN-IFKYDFLT 250 (727)
T ss_dssp --------------------------------------------------CCCCCCEEECTTSCCSCCCGG-GGGCCSCS
T ss_pred CccceEEeeCCCCCcchhhHhhcCccCcccccCcccccccee-cChhhhccCCCCcEEECCCCCCCCCChh-hcCCCCCC
Confidence 4578899999998876554443211111 222333444444 4578899999999999999999977755 44899999
Q ss_pred EEECCCCcCcccccCCcCCCCCccEEeccCCCccccchhhhcCCCCCCeeeccCCccccccCCCCCCCCcccccCCCCCC
Q psy12044 127 KLTLSGNPIKQIKTGAFQPLSYLVTLELSKCGIEVIEDAAFVGLDSLEWLKLDNNKITTISGSNILPTGLHGIDLHHNPW 206 (767)
Q Consensus 127 ~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~L~~i~~~~~~~l~~L~~L~Ls~N~Lt~ip~~~~~~~~L~~L~Ls~N~l 206 (767)
.|+|++|.|+.++ ..|..+++|+.|+|++|.|+.+ |..|..+.+|+.|+|++|.|+.||..+..+.+|+.|+|++|+|
T Consensus 251 ~L~Ls~N~l~~lp-~~~~~l~~L~~L~Ls~N~l~~l-p~~~~~l~~L~~L~L~~N~l~~lp~~~~~l~~L~~L~L~~N~l 328 (727)
T 4b8c_D 251 RLYLNGNSLTELP-AEIKNLSNLRVLDLSHNRLTSL-PAELGSCFQLKYFYFFDNMVTTLPWEFGNLCNLQFLGVEGNPL 328 (727)
T ss_dssp CCBCTTSCCSCCC-GGGGGGTTCCEEECTTSCCSSC-CSSGGGGTTCSEEECCSSCCCCCCSSTTSCTTCCCEECTTSCC
T ss_pred EEEeeCCcCcccC-hhhhCCCCCCEEeCcCCcCCcc-ChhhcCCCCCCEEECCCCCCCccChhhhcCCCccEEeCCCCcc
Confidence 9999999999664 5789999999999999999966 5679999999999999999999999888889999999999999
Q ss_pred Cch
Q psy12044 207 TCD 209 (767)
Q Consensus 207 ~C~ 209 (767)
...
T Consensus 329 ~~~ 331 (727)
T 4b8c_D 329 EKQ 331 (727)
T ss_dssp CSH
T ss_pred CCC
Confidence 854
No 127
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.36 E-value=1.1e-13 Score=151.34 Aligned_cols=158 Identities=18% Similarity=0.247 Sum_probs=93.1
Q ss_pred CCCccEEEeeCCCCCCCCc----hhhhccCCC-CccEEEccCCCCCccCcccccCC-----CCCCEEEccCCCCCCCCCC
Q psy12044 48 DPNTQVLDYTGNNLKTLHN----EKFQKMGLV-NLQKIYLSRCRISVIDSKAFRGL-----TNLVDLDFSHNVLQTVPSD 117 (767)
Q Consensus 48 ~~~L~~L~Ls~N~L~~l~~----~~f~~~~L~-~L~~L~Ls~N~L~~i~p~~f~~L-----~~L~~L~Ls~N~Lt~l~p~ 117 (767)
+.+|++|+|++|.|+.... ..|.. ++ +|+.|+|++|.|+...+..|..+ ++|++|+|++|.|+...+.
T Consensus 21 ~~~L~~L~Ls~n~l~~~~~~~l~~~l~~--~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~ 98 (362)
T 3goz_A 21 PHGVTSLDLSLNNLYSISTVELIQAFAN--TPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSD 98 (362)
T ss_dssp CTTCCEEECTTSCGGGSCHHHHHHHHHT--CCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHH
T ss_pred CCCceEEEccCCCCChHHHHHHHHHHHh--CCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHH
Confidence 4457777777777776665 44442 55 67777777777776665555554 6777777777776665544
Q ss_pred CC----CCC-CCCcEEECCCCcCcccccCCc----CC-CCCccEEeccCCCccccch----hhhcCCC-CCCeeeccCCc
Q psy12044 118 TF----PDY-PSLMKLTLSGNPIKQIKTGAF----QP-LSYLVTLELSKCGIEVIED----AAFVGLD-SLEWLKLDNNK 182 (767)
Q Consensus 118 ~f----~~l-~~L~~L~Ls~N~l~~l~~~~~----~~-l~~L~~L~Ls~N~L~~i~~----~~~~~l~-~L~~L~Ls~N~ 182 (767)
.+ ..+ ++|+.|+|++|.|+......+ .. ..+|+.|+|++|.|+.... ..+..++ +|+.|+|++|+
T Consensus 99 ~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~ 178 (362)
T 3goz_A 99 ELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNN 178 (362)
T ss_dssp HHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSC
T ss_pred HHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCC
Confidence 32 223 567777777777666554332 22 2467777777777664332 2233444 67777777776
Q ss_pred cccccCC-----CCCC-CCcccccCCCCCCC
Q psy12044 183 ITTISGS-----NILP-TGLHGIDLHHNPWT 207 (767)
Q Consensus 183 Lt~ip~~-----~~~~-~~L~~L~Ls~N~l~ 207 (767)
|+..... +... .+|+.|+|++|.+.
T Consensus 179 l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~ 209 (362)
T 3goz_A 179 LASKNCAELAKFLASIPASVTSLDLSANLLG 209 (362)
T ss_dssp GGGSCHHHHHHHHHTSCTTCCEEECTTSCGG
T ss_pred CchhhHHHHHHHHHhCCCCCCEEECCCCCCC
Confidence 6654321 1112 36667777777665
No 128
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.35 E-value=1.1e-13 Score=149.12 Aligned_cols=174 Identities=19% Similarity=0.183 Sum_probs=125.4
Q ss_pred eeEEEecCCCccc--cccCCCCCccEEEeeCCCCCCCCchhhhccCCCCccEEEccCCCCCcc-CcccccCCCCCCEEEc
Q psy12044 30 KQTVECVNKSLIT--VVEGMDPNTQVLDYTGNNLKTLHNEKFQKMGLVNLQKIYLSRCRISVI-DSKAFRGLTNLVDLDF 106 (767)
Q Consensus 30 ~~~v~C~~~~L~~--iP~~l~~~L~~L~Ls~N~L~~l~~~~f~~~~L~~L~~L~Ls~N~L~~i-~p~~f~~L~~L~~L~L 106 (767)
...++.++..+.. +..-+.++++.|++++|.+.+..+..+. +++|+.|+|++|.++.. .+..+..+++|++|+|
T Consensus 49 ~~~l~l~~~~~~~~~~~~~~~~~l~~L~l~~n~l~~~~~~~~~---~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L 125 (336)
T 2ast_B 49 WQTLDLTGKNLHPDVTGRLLSQGVIAFRCPRSFMDQPLAEHFS---PFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSL 125 (336)
T ss_dssp SSEEECTTCBCCHHHHHHHHHTTCSEEECTTCEECSCCCSCCC---CBCCCEEECTTCEECHHHHHHHHTTBCCCSEEEC
T ss_pred heeeccccccCCHHHHHhhhhccceEEEcCCccccccchhhcc---CCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeC
Confidence 3456666655431 0011136788888888888887776553 78888888888888765 6677888888888888
Q ss_pred cCCCCCCCCCCCCCCCCCCcEEECCCC-cCccc-ccCCcCCCCCccEEeccCC-Ccccc-chhhhcCCC-CCCeeeccCC
Q psy12044 107 SHNVLQTVPSDTFPDYPSLMKLTLSGN-PIKQI-KTGAFQPLSYLVTLELSKC-GIEVI-EDAAFVGLD-SLEWLKLDNN 181 (767)
Q Consensus 107 s~N~Lt~l~p~~f~~l~~L~~L~Ls~N-~l~~l-~~~~~~~l~~L~~L~Ls~N-~L~~i-~~~~~~~l~-~L~~L~Ls~N 181 (767)
++|.+++..+..|..+++|+.|+|++| .+++. .+..+..+++|+.|+|++| .+++. .+..+..++ +|+.|+|++|
T Consensus 126 ~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~ 205 (336)
T 2ast_B 126 EGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGY 205 (336)
T ss_dssp TTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSC
T ss_pred cCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCC
Confidence 888887766667778888888888888 67652 3444667888888888888 88764 355677788 8888888888
Q ss_pred c--cc--cccCCCCCCCCcccccCCCCCC
Q psy12044 182 K--IT--TISGSNILPTGLHGIDLHHNPW 206 (767)
Q Consensus 182 ~--Lt--~ip~~~~~~~~L~~L~Ls~N~l 206 (767)
. ++ .++..+..+++|+.|+|++|.+
T Consensus 206 ~~~~~~~~l~~~~~~~~~L~~L~l~~~~~ 234 (336)
T 2ast_B 206 RKNLQKSDLSTLVRRCPNLVHLDLSDSVM 234 (336)
T ss_dssp GGGSCHHHHHHHHHHCTTCSEEECTTCTT
T ss_pred cccCCHHHHHHHHhhCCCCCEEeCCCCCc
Confidence 4 43 4444444567888888888873
No 129
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.33 E-value=1.8e-13 Score=149.76 Aligned_cols=179 Identities=17% Similarity=0.247 Sum_probs=134.9
Q ss_pred eeEEEecCCCcccccc-----CC--CC-CccEEEeeCCCCCCCCchhhhcc--C-CCCccEEEccCCCCCccCcccc---
Q psy12044 30 KQTVECVNKSLITVVE-----GM--DP-NTQVLDYTGNNLKTLHNEKFQKM--G-LVNLQKIYLSRCRISVIDSKAF--- 95 (767)
Q Consensus 30 ~~~v~C~~~~L~~iP~-----~l--~~-~L~~L~Ls~N~L~~l~~~~f~~~--~-L~~L~~L~Ls~N~L~~i~p~~f--- 95 (767)
-+.++.++..+..++. .+ .+ +|++|+|++|.|+......+... . .++|+.|+|++|.|+...+..+
T Consensus 24 L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~ 103 (362)
T 3goz_A 24 VTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVKT 103 (362)
T ss_dssp CCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHH
T ss_pred ceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHHHHH
Confidence 3568888888877764 22 33 89999999999998877776641 1 2789999999999998877644
Q ss_pred -cCC-CCCCEEEccCCCCCCCCCCCC----CC-CCCCcEEECCCCcCcccccC----CcCCCC-CccEEeccCCCccccc
Q psy12044 96 -RGL-TNLVDLDFSHNVLQTVPSDTF----PD-YPSLMKLTLSGNPIKQIKTG----AFQPLS-YLVTLELSKCGIEVIE 163 (767)
Q Consensus 96 -~~L-~~L~~L~Ls~N~Lt~l~p~~f----~~-l~~L~~L~Ls~N~l~~l~~~----~~~~l~-~L~~L~Ls~N~L~~i~ 163 (767)
..+ ++|++|+|++|.|+...+..+ .. ..+|+.|+|++|.|+..... .+..++ +|+.|+|++|.|++..
T Consensus 104 l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~ 183 (362)
T 3goz_A 104 LAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKN 183 (362)
T ss_dssp HHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSC
T ss_pred HHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCchhh
Confidence 444 899999999999988776543 33 36899999999999854432 234444 8999999999998887
Q ss_pred hhhhc----CC-CCCCeeeccCCcccc-----ccCCCCC-CCCcccccCCCCCCCc
Q psy12044 164 DAAFV----GL-DSLEWLKLDNNKITT-----ISGSNIL-PTGLHGIDLHHNPWTC 208 (767)
Q Consensus 164 ~~~~~----~l-~~L~~L~Ls~N~Lt~-----ip~~~~~-~~~L~~L~Ls~N~l~C 208 (767)
+..+. .+ .+|+.|+|++|.|+. ++..+.. .++|+.|+|++|.+..
T Consensus 184 ~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~ 239 (362)
T 3goz_A 184 CAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHG 239 (362)
T ss_dssp HHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCC
T ss_pred HHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCc
Confidence 65444 44 599999999999987 4443333 3589999999999874
No 130
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.30 E-value=4.8e-12 Score=136.50 Aligned_cols=155 Identities=23% Similarity=0.320 Sum_probs=106.1
Q ss_pred CCCccEEEeeCCCCC--------------------CCCchhhhccC--------CCCccEEEccCCCCCccCcccccCCC
Q psy12044 48 DPNTQVLDYTGNNLK--------------------TLHNEKFQKMG--------LVNLQKIYLSRCRISVIDSKAFRGLT 99 (767)
Q Consensus 48 ~~~L~~L~Ls~N~L~--------------------~l~~~~f~~~~--------L~~L~~L~Ls~N~L~~i~p~~f~~L~ 99 (767)
.++|+.|+|++|+|. .++...|. + +.+|+.|+|.+ .++.+...+|.++.
T Consensus 48 l~~L~~LdLs~n~i~~~~~~~~~~~~~~~~~~~~~~I~~~aF~--~~~~~~~~g~~~L~~l~L~~-~i~~I~~~aF~~~~ 124 (329)
T 3sb4_A 48 FPSLKVLDISNAEIKMYSGKAGTYPNGKFYIYMANFVPAYAFS--NVVNGVTKGKQTLEKVILSE-KIKNIEDAAFKGCD 124 (329)
T ss_dssp CTTCCEEEEEEEEECCEEESSSSSGGGCCEEECTTEECTTTTE--EEETTEEEECTTCCC-CBCT-TCCEECTTTTTTCT
T ss_pred hccCeEEecCcceeEEecCccccccccccccccccccCHHHhc--ccccccccccCCCcEEECCc-cccchhHHHhhcCc
Confidence 567888888888888 34445554 5 78888888888 88888888888889
Q ss_pred CCCEEEccCCCCCCCCCCCCCC----------------------------------------------------------
Q psy12044 100 NLVDLDFSHNVLQTVPSDTFPD---------------------------------------------------------- 121 (767)
Q Consensus 100 ~L~~L~Ls~N~Lt~l~p~~f~~---------------------------------------------------------- 121 (767)
+|+.|+|.+|.++.+.+.+|..
T Consensus 125 ~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L~~~i~~~~~~~l~~~~~~~~~~~~~~ 204 (329)
T 3sb4_A 125 NLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPLETTIQVGAMGKLEDEIMKAGLQPRDI 204 (329)
T ss_dssp TCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCCEEEEEECTTCCHHHHHHHTTCCGGGC
T ss_pred ccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhccccccccccccccccceeEEecCCCcHHHHHhhcccCcccc
Confidence 9999999888876665555544
Q ss_pred --------------------CCCCcEEECCCCcCcccccCCcCCCCCccEEeccCCCccccchhhhcCCCCCC-eeeccC
Q psy12044 122 --------------------YPSLMKLTLSGNPIKQIKTGAFQPLSYLVTLELSKCGIEVIEDAAFVGLDSLE-WLKLDN 180 (767)
Q Consensus 122 --------------------l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~L~~i~~~~~~~l~~L~-~L~Ls~ 180 (767)
+++|+.|+|++|.++.++..+|.++.+|+.|+|.+| ++.+...+|.++.+|+ .|+|.+
T Consensus 205 ~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~ 283 (329)
T 3sb4_A 205 NFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA 283 (329)
T ss_dssp SEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT
T ss_pred ceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc
Confidence 345666666666666666666666666666666665 6666666666666666 666666
Q ss_pred CccccccCCCC-CCCCcccccCCCCCCC
Q psy12044 181 NKITTISGSNI-LPTGLHGIDLHHNPWT 207 (767)
Q Consensus 181 N~Lt~ip~~~~-~~~~L~~L~Ls~N~l~ 207 (767)
+++.|+...| .+.+|+.|++.+|.+.
T Consensus 284 -~l~~I~~~aF~~c~~L~~l~l~~n~i~ 310 (329)
T 3sb4_A 284 -SVTAIEFGAFMGCDNLRYVLATGDKIT 310 (329)
T ss_dssp -TCCEECTTTTTTCTTEEEEEECSSCCC
T ss_pred -cceEEchhhhhCCccCCEEEeCCCccC
Confidence 5666655444 3456666666666554
No 131
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.29 E-value=3.2e-13 Score=148.81 Aligned_cols=176 Identities=15% Similarity=0.150 Sum_probs=122.9
Q ss_pred eEEEecCCCccc-----cccCC--CCCccEEEeeCCCCCCCC---chhh-------hccCCCCccEEEccCCCCCc----
Q psy12044 31 QTVECVNKSLIT-----VVEGM--DPNTQVLDYTGNNLKTLH---NEKF-------QKMGLVNLQKIYLSRCRISV---- 89 (767)
Q Consensus 31 ~~v~C~~~~L~~-----iP~~l--~~~L~~L~Ls~N~L~~l~---~~~f-------~~~~L~~L~~L~Ls~N~L~~---- 89 (767)
+.++.++..+.. ++..+ .++|+.|+|++|.+..+. +..+ . .+++|+.|+|++|.|+.
T Consensus 35 ~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~--~~~~L~~L~Ls~n~l~~~~~~ 112 (386)
T 2ca6_A 35 KEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALL--KCPKLHTVRLSDNAFGPTAQE 112 (386)
T ss_dssp CEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHT--TCTTCCEEECCSCCCCTTTHH
T ss_pred cEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHh--hCCcccEEECCCCcCCHHHHH
Confidence 456666666553 22222 568888999887655432 3232 3 37888899999988887
Q ss_pred cCcccccCCCCCCEEEccCCCCCCCCCCCCCC----C---------CCCcEEECCCCcCccc-cc---CCcCCCCCccEE
Q psy12044 90 IDSKAFRGLTNLVDLDFSHNVLQTVPSDTFPD----Y---------PSLMKLTLSGNPIKQI-KT---GAFQPLSYLVTL 152 (767)
Q Consensus 90 i~p~~f~~L~~L~~L~Ls~N~Lt~l~p~~f~~----l---------~~L~~L~Ls~N~l~~l-~~---~~~~~l~~L~~L 152 (767)
..+..|..+++|++|+|++|.|+...+..+.. + ++|+.|+|++|.++.. .+ ..+..+++|+.|
T Consensus 113 ~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L 192 (386)
T 2ca6_A 113 PLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTV 192 (386)
T ss_dssp HHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEE
T ss_pred HHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCEE
Confidence 35667788888999999988886443333332 2 7888999999888722 22 345667888999
Q ss_pred eccCCCcc--c---cchhhhcCCCCCCeeeccCCcc-----ccccCCCCCCCCcccccCCCCCCCc
Q psy12044 153 ELSKCGIE--V---IEDAAFVGLDSLEWLKLDNNKI-----TTISGSNILPTGLHGIDLHHNPWTC 208 (767)
Q Consensus 153 ~Ls~N~L~--~---i~~~~~~~l~~L~~L~Ls~N~L-----t~ip~~~~~~~~L~~L~Ls~N~l~C 208 (767)
+|++|.|+ + +.+..+..+++|+.|+|++|.| ..++..+...++|+.|+|++|.+..
T Consensus 193 ~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~ 258 (386)
T 2ca6_A 193 KMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSA 258 (386)
T ss_dssp ECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCH
T ss_pred ECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCch
Confidence 99988887 3 3343677888899999999888 3455555566788889999888763
No 132
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.29 E-value=6.3e-12 Score=145.85 Aligned_cols=148 Identities=20% Similarity=0.258 Sum_probs=119.0
Q ss_pred CCccEEE-eeCCCCCCCCchhhh-----ccCCCCccEEEccCCCCCccCcccccCCCCCCEEEccCCCCCCCCCCCCCCC
Q psy12044 49 PNTQVLD-YTGNNLKTLHNEKFQ-----KMGLVNLQKIYLSRCRISVIDSKAFRGLTNLVDLDFSHNVLQTVPSDTFPDY 122 (767)
Q Consensus 49 ~~L~~L~-Ls~N~L~~l~~~~f~-----~~~L~~L~~L~Ls~N~L~~i~p~~f~~L~~L~~L~Ls~N~Lt~l~p~~f~~l 122 (767)
++|+.|+ ++.|.+..+....+. ......|+.|+|++|.|+++ |. |..+++|+.|+|++|.|+.+ |..|..+
T Consensus 409 ~~L~~L~~l~~n~~~~L~~l~l~~n~i~~l~~~~L~~L~Ls~n~l~~l-p~-~~~l~~L~~L~Ls~N~l~~l-p~~~~~l 485 (567)
T 1dce_A 409 STLKAVDPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLTVL-CH-LEQLLLVTHLDLSHNRLRAL-PPALAAL 485 (567)
T ss_dssp HHHHHHCGGGHHHHHHHHHHHHHHHHHHHHHHTTCSEEECTTSCCSSC-CC-GGGGTTCCEEECCSSCCCCC-CGGGGGC
T ss_pred HhcccCcchhhcccchhhhhhhhcccccccCccCceEEEecCCCCCCC-cC-ccccccCcEeecCccccccc-chhhhcC
Confidence 3567777 566655443322111 11123689999999999997 44 99999999999999999966 4689999
Q ss_pred CCCcEEECCCCcCcccccCCcCCCCCccEEeccCCCccccc-hhhhcCCCCCCeeeccCCccccccCCCCC----CCCcc
Q psy12044 123 PSLMKLTLSGNPIKQIKTGAFQPLSYLVTLELSKCGIEVIE-DAAFVGLDSLEWLKLDNNKITTISGSNIL----PTGLH 197 (767)
Q Consensus 123 ~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~L~~i~-~~~~~~l~~L~~L~Ls~N~Lt~ip~~~~~----~~~L~ 197 (767)
++|+.|+|++|.|++++ .|..+++|+.|+|++|.|+++. |..|..+++|+.|+|++|.|+++++.... +++|+
T Consensus 486 ~~L~~L~Ls~N~l~~lp--~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~ 563 (567)
T 1dce_A 486 RCLEVLQASDNALENVD--GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVS 563 (567)
T ss_dssp TTCCEEECCSSCCCCCG--GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCS
T ss_pred CCCCEEECCCCCCCCCc--ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccC
Confidence 99999999999999975 6999999999999999999997 88899999999999999999998876532 46777
Q ss_pred cccC
Q psy12044 198 GIDL 201 (767)
Q Consensus 198 ~L~L 201 (767)
.|++
T Consensus 564 ~L~l 567 (567)
T 1dce_A 564 SILT 567 (567)
T ss_dssp EEEC
T ss_pred ccCC
Confidence 7754
No 133
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.29 E-value=6.1e-12 Score=145.96 Aligned_cols=166 Identities=17% Similarity=0.184 Sum_probs=125.1
Q ss_pred CCCccccccCC--CCCccEEEeeCCC-------------CCCCCchhhhccCCCCccEEE-ccCCCCCccCcc-----cc
Q psy12044 37 NKSLITVVEGM--DPNTQVLDYTGNN-------------LKTLHNEKFQKMGLVNLQKIY-LSRCRISVIDSK-----AF 95 (767)
Q Consensus 37 ~~~L~~iP~~l--~~~L~~L~Ls~N~-------------L~~l~~~~f~~~~L~~L~~L~-Ls~N~L~~i~p~-----~f 95 (767)
++.+..+|..+ .++|+.|++++|. +.+..+..+.. |.+|+.|+ ++.|.+..+..- .+
T Consensus 358 ~n~L~~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~--l~~L~~L~~l~~n~~~~L~~l~l~~n~i 435 (567)
T 1dce_A 358 VEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQY--FSTLKAVDPMRAAYLDDLRSKFLLENSV 435 (567)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHH--HHHHHHHCGGGHHHHHHHHHHHHHHHHH
T ss_pred hhhHHhhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHH--HHhcccCcchhhcccchhhhhhhhcccc
Confidence 34445556544 4566666665553 44555555553 67777777 454433322100 01
Q ss_pred cC--CCCCCEEEccCCCCCCCCCCCCCCCCCCcEEECCCCcCcccccCCcCCCCCccEEeccCCCccccchhhhcCCCCC
Q psy12044 96 RG--LTNLVDLDFSHNVLQTVPSDTFPDYPSLMKLTLSGNPIKQIKTGAFQPLSYLVTLELSKCGIEVIEDAAFVGLDSL 173 (767)
Q Consensus 96 ~~--L~~L~~L~Ls~N~Lt~l~p~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~L~~i~~~~~~~l~~L 173 (767)
.. ...|+.|+|++|.|++++ . |..+++|+.|+|++|.|+.++ ..|..+++|+.|+|++|.|++++ .|..+++|
T Consensus 436 ~~l~~~~L~~L~Ls~n~l~~lp-~-~~~l~~L~~L~Ls~N~l~~lp-~~~~~l~~L~~L~Ls~N~l~~lp--~l~~l~~L 510 (567)
T 1dce_A 436 LKMEYADVRVLHLAHKDLTVLC-H-LEQLLLVTHLDLSHNRLRALP-PALAALRCLEVLQASDNALENVD--GVANLPRL 510 (567)
T ss_dssp HHHHHTTCSEEECTTSCCSSCC-C-GGGGTTCCEEECCSSCCCCCC-GGGGGCTTCCEEECCSSCCCCCG--GGTTCSSC
T ss_pred cccCccCceEEEecCCCCCCCc-C-ccccccCcEeecCcccccccc-hhhhcCCCCCEEECCCCCCCCCc--ccCCCCCC
Confidence 11 125999999999999975 4 999999999999999999764 48999999999999999999975 69999999
Q ss_pred CeeeccCCccccc--cCCCCCCCCcccccCCCCCCCch
Q psy12044 174 EWLKLDNNKITTI--SGSNILPTGLHGIDLHHNPWTCD 209 (767)
Q Consensus 174 ~~L~Ls~N~Lt~i--p~~~~~~~~L~~L~Ls~N~l~C~ 209 (767)
+.|+|++|+|+++ |..+..+++|+.|+|++|++...
T Consensus 511 ~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~ 548 (567)
T 1dce_A 511 QELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQE 548 (567)
T ss_dssp CEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGS
T ss_pred cEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCC
Confidence 9999999999988 67777889999999999999754
No 134
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.28 E-value=3.5e-13 Score=145.10 Aligned_cols=174 Identities=16% Similarity=0.094 Sum_probs=111.9
Q ss_pred eeEEEecCCCccccccCC--CCCccEEEeeCCCCCCC-CchhhhccCCCCccEEEccCCCCCccCcccccCCCCCCEEEc
Q psy12044 30 KQTVECVNKSLITVVEGM--DPNTQVLDYTGNNLKTL-HNEKFQKMGLVNLQKIYLSRCRISVIDSKAFRGLTNLVDLDF 106 (767)
Q Consensus 30 ~~~v~C~~~~L~~iP~~l--~~~L~~L~Ls~N~L~~l-~~~~f~~~~L~~L~~L~Ls~N~L~~i~p~~f~~L~~L~~L~L 106 (767)
-..+++.+..+...+..+ .++|+.|+|++|.+++. .+..+. .+++|+.|+|++|.+++..+..|..+++|++|+|
T Consensus 72 l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~--~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L 149 (336)
T 2ast_B 72 VIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILS--QCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNL 149 (336)
T ss_dssp CSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHT--TBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEEC
T ss_pred ceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHHHHh--hCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEEC
Confidence 345666666665554444 45677777777777654 344444 3677777777777777666667777777777777
Q ss_pred cCC-CCCCC-CCCCCCCCCCCcEEECCCC-cCccc-ccCCcCCCC-CccEEeccCC--Ccc-ccchhhhcCCCCCCeeec
Q psy12044 107 SHN-VLQTV-PSDTFPDYPSLMKLTLSGN-PIKQI-KTGAFQPLS-YLVTLELSKC--GIE-VIEDAAFVGLDSLEWLKL 178 (767)
Q Consensus 107 s~N-~Lt~l-~p~~f~~l~~L~~L~Ls~N-~l~~l-~~~~~~~l~-~L~~L~Ls~N--~L~-~i~~~~~~~l~~L~~L~L 178 (767)
++| .+++. .+..+..+++|+.|+|++| .++.. .+..+..++ +|+.|+|++| .++ ...+..+..+++|+.|+|
T Consensus 150 ~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l 229 (336)
T 2ast_B 150 SGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDL 229 (336)
T ss_dssp TTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEEC
T ss_pred CCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeC
Confidence 777 56542 3344556777777777777 77653 234456667 7777777777 444 333445666777777777
Q ss_pred cCCc-cc-cccCCCCCCCCcccccCCCCC
Q psy12044 179 DNNK-IT-TISGSNILPTGLHGIDLHHNP 205 (767)
Q Consensus 179 s~N~-Lt-~ip~~~~~~~~L~~L~Ls~N~ 205 (767)
++|. ++ ..+..+...++|+.|+|++|.
T Consensus 230 ~~~~~l~~~~~~~l~~l~~L~~L~l~~~~ 258 (336)
T 2ast_B 230 SDSVMLKNDCFQEFFQLNYLQHLSLSRCY 258 (336)
T ss_dssp TTCTTCCGGGGGGGGGCTTCCEEECTTCT
T ss_pred CCCCcCCHHHHHHHhCCCCCCEeeCCCCC
Confidence 7777 44 334444455777777777775
No 135
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.26 E-value=2.6e-14 Score=142.79 Aligned_cols=108 Identities=26% Similarity=0.280 Sum_probs=68.0
Q ss_pred CCCccEEEccCCCCCccCcccccCCCCCCEEEccCCCCCCCCCCCCCCCCCCcEEECCCCcCcccccCCcCCCCCccEEe
Q psy12044 74 LVNLQKIYLSRCRISVIDSKAFRGLTNLVDLDFSHNVLQTVPSDTFPDYPSLMKLTLSGNPIKQIKTGAFQPLSYLVTLE 153 (767)
Q Consensus 74 L~~L~~L~Ls~N~L~~i~p~~f~~L~~L~~L~Ls~N~Lt~l~p~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~ 153 (767)
+++|+.|+|++|.|+++ | .|..+++|+.|+|++|.|+.++ ..+..+++|+.|+|++|.+++++ .+..+++|+.|+
T Consensus 47 l~~L~~L~ls~n~l~~l-~-~~~~l~~L~~L~l~~n~l~~l~-~~~~~~~~L~~L~L~~N~l~~l~--~~~~l~~L~~L~ 121 (198)
T 1ds9_A 47 LKACKHLALSTNNIEKI-S-SLSGMENLRILSLGRNLIKKIE-NLDAVADTLEELWISYNQIASLS--GIEKLVNLRVLY 121 (198)
T ss_dssp TTTCSEEECSEEEESCC-C-CHHHHTTCCEEEEEEEEECSCS-SHHHHHHHCSEEEEEEEECCCHH--HHHHHHHSSEEE
T ss_pred CCCCCEEECCCCCCccc-c-ccccCCCCCEEECCCCCccccc-chhhcCCcCCEEECcCCcCCcCC--ccccCCCCCEEE
Confidence 66677777777766664 3 5666667777777777666543 34445566666666666666654 355666666666
Q ss_pred ccCCCccccch-hhhcCCCCCCeeeccCCccccc
Q psy12044 154 LSKCGIEVIED-AAFVGLDSLEWLKLDNNKITTI 186 (767)
Q Consensus 154 Ls~N~L~~i~~-~~~~~l~~L~~L~Ls~N~Lt~i 186 (767)
|++|.|+.+.. ..+..+++|+.|+|++|.++..
T Consensus 122 l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~ 155 (198)
T 1ds9_A 122 MSNNKITNWGEIDKLAALDKLEDLLLAGNPLYND 155 (198)
T ss_dssp ESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHH
T ss_pred CCCCcCCchhHHHHHhcCCCCCEEEecCCccccc
Confidence 66666666543 4566666666666666666544
No 136
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.25 E-value=1.8e-11 Score=131.90 Aligned_cols=102 Identities=33% Similarity=0.414 Sum_probs=93.9
Q ss_pred CCCCCEEEccCCCCCCCCCCCCCCCCCCcEEECCCCcCcccccCCcCCCCCcc-EEeccCCCccccchhhhcCCCCCCee
Q psy12044 98 LTNLVDLDFSHNVLQTVPSDTFPDYPSLMKLTLSGNPIKQIKTGAFQPLSYLV-TLELSKCGIEVIEDAAFVGLDSLEWL 176 (767)
Q Consensus 98 L~~L~~L~Ls~N~Lt~l~p~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~-~L~Ls~N~L~~i~~~~~~~l~~L~~L 176 (767)
+++|+.|+|++|+++.++..+|.++.+|+.|+|.+| ++.+...+|.++.+|+ .|+|.+ .++.+.+.+|.++.+|+.|
T Consensus 225 ~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l 302 (329)
T 3sb4_A 225 MPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYV 302 (329)
T ss_dssp CTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEE
T ss_pred cCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEE
Confidence 678999999999999999999999999999999998 9999999999999999 999998 8999999999999999999
Q ss_pred eccCCccccccCCCCC-CCCcccccC
Q psy12044 177 KLDNNKITTISGSNIL-PTGLHGIDL 201 (767)
Q Consensus 177 ~Ls~N~Lt~ip~~~~~-~~~L~~L~L 201 (767)
+|++|+++.|+...|. ..+|+.|+.
T Consensus 303 ~l~~n~i~~I~~~aF~~~~~L~~ly~ 328 (329)
T 3sb4_A 303 LATGDKITTLGDELFGNGVPSKLIYK 328 (329)
T ss_dssp EECSSCCCEECTTTTCTTCCCCEEEC
T ss_pred EeCCCccCccchhhhcCCcchhhhcc
Confidence 9999999999987664 567777653
No 137
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.17 E-value=8.7e-13 Score=148.23 Aligned_cols=176 Identities=13% Similarity=0.095 Sum_probs=111.7
Q ss_pred eeEEEecCCCccccc-----cCC---CCCccEEEeeCCCCCCCC----chhhhccCCCCccEEEccCCCCCccC-----c
Q psy12044 30 KQTVECVNKSLITVV-----EGM---DPNTQVLDYTGNNLKTLH----NEKFQKMGLVNLQKIYLSRCRISVID-----S 92 (767)
Q Consensus 30 ~~~v~C~~~~L~~iP-----~~l---~~~L~~L~Ls~N~L~~l~----~~~f~~~~L~~L~~L~Ls~N~L~~i~-----p 92 (767)
-+.++.++..+.... ..+ .++|+.|+|++|.++... +..+.. +++|+.|+|++|.|+... +
T Consensus 172 L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~--~~~L~~L~Ls~n~l~~~~~~~l~~ 249 (461)
T 1z7x_W 172 FKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVAS--KASLRELALGSNKLGDVGMAELCP 249 (461)
T ss_dssp CCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHH--CTTCCEEECCSSBCHHHHHHHHHH
T ss_pred CCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHh--CCCccEEeccCCcCChHHHHHHHH
Confidence 355666666654322 111 347888888888887643 334443 678888888888877643 2
Q ss_pred ccccCCCCCCEEEccCCCCCCC----CCCCCCCCCCCcEEECCCCcCcccccCCcC-----CCCCccEEeccCCCcccc-
Q psy12044 93 KAFRGLTNLVDLDFSHNVLQTV----PSDTFPDYPSLMKLTLSGNPIKQIKTGAFQ-----PLSYLVTLELSKCGIEVI- 162 (767)
Q Consensus 93 ~~f~~L~~L~~L~Ls~N~Lt~l----~p~~f~~l~~L~~L~Ls~N~l~~l~~~~~~-----~l~~L~~L~Ls~N~L~~i- 162 (767)
..+..+++|++|+|++|.|+.. .+..+..+++|+.|+|++|.++......+. ..++|+.|+|++|.+++.
T Consensus 250 ~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~ 329 (461)
T 1z7x_W 250 GLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAAC 329 (461)
T ss_dssp HHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGG
T ss_pred HHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHH
Confidence 3334577888888888887763 234455677888888888877654332222 235777888888877765
Q ss_pred ---chhhhcCCCCCCeeeccCCccccccCC-C----C-CCCCcccccCCCCCCC
Q psy12044 163 ---EDAAFVGLDSLEWLKLDNNKITTISGS-N----I-LPTGLHGIDLHHNPWT 207 (767)
Q Consensus 163 ---~~~~~~~l~~L~~L~Ls~N~Lt~ip~~-~----~-~~~~L~~L~Ls~N~l~ 207 (767)
.+..+..+++|+.|+|++|.|+..... + . ..++|+.|+|++|.+.
T Consensus 330 ~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~ 383 (461)
T 1z7x_W 330 CSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVS 383 (461)
T ss_dssp HHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCC
T ss_pred HHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCC
Confidence 234455667778888887777643211 1 1 1357777777777765
No 138
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.16 E-value=1.5e-13 Score=137.12 Aligned_cols=134 Identities=21% Similarity=0.166 Sum_probs=113.9
Q ss_pred CCCccEEEccCCCCCccCcc------cccCCCCCCEEEccCCCCCCCCCCCCCCCCCCcEEECCCCcCcccccCCcCCCC
Q psy12044 74 LVNLQKIYLSRCRISVIDSK------AFRGLTNLVDLDFSHNVLQTVPSDTFPDYPSLMKLTLSGNPIKQIKTGAFQPLS 147 (767)
Q Consensus 74 L~~L~~L~Ls~N~L~~i~p~------~f~~L~~L~~L~Ls~N~Lt~l~p~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~ 147 (767)
...++.++++.+.+.+..|. .|..+++|++|+|++|.|++++ .|..+++|+.|+|++|.|+.++. .+..++
T Consensus 17 ~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~l~--~~~~l~~L~~L~l~~n~l~~l~~-~~~~~~ 93 (198)
T 1ds9_A 17 RKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEKIS--SLSGMENLRILSLGRNLIKKIEN-LDAVAD 93 (198)
T ss_dssp TTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESCCC--CHHHHTTCCEEEEEEEEECSCSS-HHHHHH
T ss_pred cccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcccc--ccccCCCCCEEECCCCCcccccc-hhhcCC
Confidence 45666667777777766555 8999999999999999999965 78899999999999999997653 566678
Q ss_pred CccEEeccCCCccccchhhhcCCCCCCeeeccCCccccccC--CCCCCCCcccccCCCCCCCchhhh
Q psy12044 148 YLVTLELSKCGIEVIEDAAFVGLDSLEWLKLDNNKITTISG--SNILPTGLHGIDLHHNPWTCDCLL 212 (767)
Q Consensus 148 ~L~~L~Ls~N~L~~i~~~~~~~l~~L~~L~Ls~N~Lt~ip~--~~~~~~~L~~L~Ls~N~l~C~c~l 212 (767)
+|+.|+|++|.|++++ .+..+++|+.|+|++|+|+.++. .+..+++|+.|++++|++.|.|..
T Consensus 94 ~L~~L~L~~N~l~~l~--~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~ 158 (198)
T 1ds9_A 94 TLEELWISYNQIASLS--GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKE 158 (198)
T ss_dssp HCSEEEEEEEECCCHH--HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHT
T ss_pred cCCEEECcCCcCCcCC--ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCcccccccc
Confidence 9999999999999975 58889999999999999998764 455678999999999999988753
No 139
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.14 E-value=2.7e-12 Score=144.16 Aligned_cols=134 Identities=20% Similarity=0.299 Sum_probs=62.4
Q ss_pred CCccEEEeeCCCCCCCC----chhhhccCCCCccEEEccCCCCCccCcccc-cCCC----CCCEEEccCCCCCC----CC
Q psy12044 49 PNTQVLDYTGNNLKTLH----NEKFQKMGLVNLQKIYLSRCRISVIDSKAF-RGLT----NLVDLDFSHNVLQT----VP 115 (767)
Q Consensus 49 ~~L~~L~Ls~N~L~~l~----~~~f~~~~L~~L~~L~Ls~N~L~~i~p~~f-~~L~----~L~~L~Ls~N~Lt~----l~ 115 (767)
+++++|+|++|.|+... +..+. .+++|+.|+|++|.|+...+..+ ..+. +|++|+|++|.|+. ..
T Consensus 28 ~~L~~L~L~~~~l~~~~~~~l~~~l~--~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l 105 (461)
T 1z7x_W 28 QQCQVVRLDDCGLTEARCKDISSALR--VNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVL 105 (461)
T ss_dssp TTCSEEEEESSCCCHHHHHHHHHHHH--TCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHH
T ss_pred CCccEEEccCCCCCHHHHHHHHHHHH--hCCCcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEccCCCCCHHHHHHH
Confidence 45555555555555321 12222 24555555555555554322222 2233 45555555555553 22
Q ss_pred CCCCCCCCCCcEEECCCCcCcccccCC-----cCCCCCccEEeccCCCccccc----hhhhcCCCCCCeeeccCCccc
Q psy12044 116 SDTFPDYPSLMKLTLSGNPIKQIKTGA-----FQPLSYLVTLELSKCGIEVIE----DAAFVGLDSLEWLKLDNNKIT 184 (767)
Q Consensus 116 p~~f~~l~~L~~L~Ls~N~l~~l~~~~-----~~~l~~L~~L~Ls~N~L~~i~----~~~~~~l~~L~~L~Ls~N~Lt 184 (767)
+..|..+++|+.|+|++|.++...... +...++|+.|+|++|.++... +..+..+++|+.|+|++|.++
T Consensus 106 ~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~ 183 (461)
T 1z7x_W 106 SSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDIN 183 (461)
T ss_dssp HHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCH
T ss_pred HHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcc
Confidence 344555555555555555554322211 112334555555555555432 233344455555555555554
No 140
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.05 E-value=4.4e-12 Score=139.57 Aligned_cols=163 Identities=15% Similarity=0.181 Sum_probs=123.2
Q ss_pred CCCCCccEEEeeCCCCCCCCchhhhcc---CCCCccEEEccCCCCCccCcccc-cCCCCCCEEEccCCCCCCCCCCCC--
Q psy12044 46 GMDPNTQVLDYTGNNLKTLHNEKFQKM---GLVNLQKIYLSRCRISVIDSKAF-RGLTNLVDLDFSHNVLQTVPSDTF-- 119 (767)
Q Consensus 46 ~l~~~L~~L~Ls~N~L~~l~~~~f~~~---~L~~L~~L~Ls~N~L~~i~p~~f-~~L~~L~~L~Ls~N~Lt~l~p~~f-- 119 (767)
.+.+.++.|+|++|.|+......+... ...+|+.|+|++|.|+......+ ..+.+|+.|+|++|.|+......+
T Consensus 69 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~ 148 (372)
T 3un9_A 69 EVLSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRD 148 (372)
T ss_dssp HHHTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHH
T ss_pred HHHhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHH
Confidence 345789999999999997766655532 23689999999999986543333 346789999999999976543333
Q ss_pred ---CCCCCCcEEECCCCcCccccc----CCcCCCCCccEEeccCCCccccc----hhhhcCCCCCCeeeccCCccccccC
Q psy12044 120 ---PDYPSLMKLTLSGNPIKQIKT----GAFQPLSYLVTLELSKCGIEVIE----DAAFVGLDSLEWLKLDNNKITTISG 188 (767)
Q Consensus 120 ---~~l~~L~~L~Ls~N~l~~l~~----~~~~~l~~L~~L~Ls~N~L~~i~----~~~~~~l~~L~~L~Ls~N~Lt~ip~ 188 (767)
...++|+.|+|++|.|+.... ..+..+++|+.|+|++|.|+... ...+...++|+.|+|++|.|+....
T Consensus 149 ~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~ 228 (372)
T 3un9_A 149 LLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAA 228 (372)
T ss_dssp HHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHH
T ss_pred HHHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHH
Confidence 346789999999999976432 23466889999999999998654 4556778899999999999985432
Q ss_pred -----CCCCCCCcccccCCCCCCCc
Q psy12044 189 -----SNILPTGLHGIDLHHNPWTC 208 (767)
Q Consensus 189 -----~~~~~~~L~~L~Ls~N~l~C 208 (767)
.+...++|+.|+|++|.+.-
T Consensus 229 ~~l~~~L~~~~~L~~L~Ls~N~i~~ 253 (372)
T 3un9_A 229 LALARAAREHPSLELLHLYFNELSS 253 (372)
T ss_dssp HHHHHHHHHCSSCCEEECTTSSCCH
T ss_pred HHHHHHHHhCCCCCEEeccCCCCCH
Confidence 22234789999999999874
No 141
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.94 E-value=3.9e-09 Score=117.17 Aligned_cols=163 Identities=16% Similarity=0.257 Sum_probs=118.7
Q ss_pred EEecCCCccccccCC---CCCccEEEeeCCCCCCCCchhhhccCCCCccEEEccCCCCCccCcccccCCCCCCEEEccCC
Q psy12044 33 VECVNKSLITVVEGM---DPNTQVLDYTGNNLKTLHNEKFQKMGLVNLQKIYLSRCRISVIDSKAFRGLTNLVDLDFSHN 109 (767)
Q Consensus 33 v~C~~~~L~~iP~~l---~~~L~~L~Ls~N~L~~l~~~~f~~~~L~~L~~L~Ls~N~L~~i~p~~f~~L~~L~~L~Ls~N 109 (767)
+.... .+..|.... ..+|+.|+|++|.++.++...|. +.+|+.|.|.+ .++.+...+|.++.+|+.|+|..|
T Consensus 162 i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~---~~~L~~l~lp~-~l~~I~~~aF~~~~~L~~l~l~~~ 236 (401)
T 4fdw_A 162 IVFPS-TLEQLKEDIFYYCYNLKKADLSKTKITKLPASTFV---YAGIEEVLLPV-TLKEIGSQAFLKTSQLKTIEIPEN 236 (401)
T ss_dssp EECCT-TCCEECSSTTTTCTTCCEEECTTSCCSEECTTTTT---TCCCSEEECCT-TCCEECTTTTTTCTTCCCEECCTT
T ss_pred EEeCC-CccEehHHHhhCcccCCeeecCCCcceEechhhEe---ecccCEEEeCC-chheehhhHhhCCCCCCEEecCCC
Confidence 44433 556666544 46789999999999998888887 57888888874 488888888888888888888764
Q ss_pred CCCCCCCCCCCCCCCCcEEECCCCcCcccccCCcCCCCCccEEeccCCCcc-----ccchhhhcCCCCCCeeeccCCccc
Q psy12044 110 VLQTVPSDTFPDYPSLMKLTLSGNPIKQIKTGAFQPLSYLVTLELSKCGIE-----VIEDAAFVGLDSLEWLKLDNNKIT 184 (767)
Q Consensus 110 ~Lt~l~p~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~L~-----~i~~~~~~~l~~L~~L~Ls~N~Lt 184 (767)
++.+...+|.+ .+|+.+.| .|.++.+...+|.++.+|+.|+|.+|.+. .+...+|.++.+|+.|+|. |.++
T Consensus 237 -l~~I~~~aF~~-~~L~~i~l-p~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~-~~i~ 312 (401)
T 4fdw_A 237 -VSTIGQEAFRE-SGITTVKL-PNGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIP-ESIR 312 (401)
T ss_dssp -CCEECTTTTTT-CCCSEEEE-ETTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCC-TTCC
T ss_pred -ccCcccccccc-CCccEEEe-CCCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeC-CceE
Confidence 67777777776 67777777 45577777777777777777777776655 5666777777777777777 4577
Q ss_pred cccCCCCC-CCCcccccCCCC
Q psy12044 185 TISGSNIL-PTGLHGIDLHHN 204 (767)
Q Consensus 185 ~ip~~~~~-~~~L~~L~Ls~N 204 (767)
.|....|. +.+|+.|.|..|
T Consensus 313 ~I~~~aF~~c~~L~~l~lp~~ 333 (401)
T 4fdw_A 313 ILGQGLLGGNRKVTQLTIPAN 333 (401)
T ss_dssp EECTTTTTTCCSCCEEEECTT
T ss_pred EEhhhhhcCCCCccEEEECcc
Confidence 77666554 367777777554
No 142
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.87 E-value=7.8e-09 Score=114.70 Aligned_cols=158 Identities=19% Similarity=0.250 Sum_probs=134.9
Q ss_pred CccccccCCC--CCccEEEeeCCCCCCCCchhhhccCCCCccEEEccCCCCCccCcccccCCCCCCEEEccCCCCCCCCC
Q psy12044 39 SLITVVEGMD--PNTQVLDYTGNNLKTLHNEKFQKMGLVNLQKIYLSRCRISVIDSKAFRGLTNLVDLDFSHNVLQTVPS 116 (767)
Q Consensus 39 ~L~~iP~~l~--~~L~~L~Ls~N~L~~l~~~~f~~~~L~~L~~L~Ls~N~L~~i~p~~f~~L~~L~~L~Ls~N~Lt~l~p 116 (767)
++..|+...+ .+|+.|.|.+ .+..+....|.. |.+|+.|+|.+|.++.+...+|. ..+|+.|.|. +.++.+..
T Consensus 145 ~i~~I~~~aF~~~~L~~i~lp~-~l~~I~~~aF~~--c~~L~~l~l~~n~l~~I~~~aF~-~~~L~~l~lp-~~l~~I~~ 219 (401)
T 4fdw_A 145 GLKSIGDMAFFNSTVQEIVFPS-TLEQLKEDIFYY--CYNLKKADLSKTKITKLPASTFV-YAGIEEVLLP-VTLKEIGS 219 (401)
T ss_dssp TCCEECTTTTTTCCCCEEECCT-TCCEECSSTTTT--CTTCCEEECTTSCCSEECTTTTT-TCCCSEEECC-TTCCEECT
T ss_pred CccEECHHhcCCCCceEEEeCC-CccEehHHHhhC--cccCCeeecCCCcceEechhhEe-ecccCEEEeC-Cchheehh
Confidence 3666665442 4689999986 889999999984 89999999999999999999998 5899999998 45999999
Q ss_pred CCCCCCCCCcEEECCCCcCcccccCCcCCCCCccEEeccCCCccccchhhhcCCCCCCeeeccCCccc-----cccCCCC
Q psy12044 117 DTFPDYPSLMKLTLSGNPIKQIKTGAFQPLSYLVTLELSKCGIEVIEDAAFVGLDSLEWLKLDNNKIT-----TISGSNI 191 (767)
Q Consensus 117 ~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~L~~i~~~~~~~l~~L~~L~Ls~N~Lt-----~ip~~~~ 191 (767)
.+|.++.+|+.|.|..| ++.+...+|.+ .+|+.+.| .+.++.+...+|.++.+|+.|+|.+|.+. .|+...|
T Consensus 220 ~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~l-p~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF 296 (401)
T 4fdw_A 220 QAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKL-PNGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCL 296 (401)
T ss_dssp TTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEE-ETTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTT
T ss_pred hHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEe-CCCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHh
Confidence 99999999999999975 88899999998 78999999 56789999999999999999999998776 6776655
Q ss_pred -CCCCcccccCCCC
Q psy12044 192 -LPTGLHGIDLHHN 204 (767)
Q Consensus 192 -~~~~L~~L~Ls~N 204 (767)
.+.+|+.+.|.++
T Consensus 297 ~~c~~L~~l~l~~~ 310 (401)
T 4fdw_A 297 EGCPKLARFEIPES 310 (401)
T ss_dssp TTCTTCCEECCCTT
T ss_pred hCCccCCeEEeCCc
Confidence 4578999999854
No 143
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.83 E-value=3e-10 Score=124.89 Aligned_cols=155 Identities=14% Similarity=0.121 Sum_probs=115.3
Q ss_pred eEEEecCCCccccc-----cCC---CCCccEEEeeCCCCCCCCchhhhccCCCCccEEEccCCCCCccCcccc-----cC
Q psy12044 31 QTVECVNKSLITVV-----EGM---DPNTQVLDYTGNNLKTLHNEKFQKMGLVNLQKIYLSRCRISVIDSKAF-----RG 97 (767)
Q Consensus 31 ~~v~C~~~~L~~iP-----~~l---~~~L~~L~Ls~N~L~~l~~~~f~~~~L~~L~~L~Ls~N~L~~i~p~~f-----~~ 97 (767)
+.++.++..+.... ..+ ..+|+.|+|++|.|+......+.. .+.+|+.|+|++|.|+......| ..
T Consensus 75 ~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~-~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~~ 153 (372)
T 3un9_A 75 RQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLP-VFLRARKLGLQLNSLGPEACKDLRDLLLHD 153 (372)
T ss_dssp CEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHH-HHHTEEEEECCSSCCCHHHHHHHHHHHHST
T ss_pred CEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHH-HHHhccHhhcCCCCCCHHHHHHHHHHHHhc
Confidence 45666666655422 111 268999999999998654444432 36789999999999987654444 35
Q ss_pred CCCCCEEEccCCCCCCCC----CCCCCCCCCCcEEECCCCcCcccc----cCCcCCCCCccEEeccCCCccccch----h
Q psy12044 98 LTNLVDLDFSHNVLQTVP----SDTFPDYPSLMKLTLSGNPIKQIK----TGAFQPLSYLVTLELSKCGIEVIED----A 165 (767)
Q Consensus 98 L~~L~~L~Ls~N~Lt~l~----p~~f~~l~~L~~L~Ls~N~l~~l~----~~~~~~l~~L~~L~Ls~N~L~~i~~----~ 165 (767)
.++|++|+|++|.|+... ...+..+++|++|+|++|.|+... ...+...++|+.|+|++|.|+.... .
T Consensus 154 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~ 233 (372)
T 3un9_A 154 QCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALAR 233 (372)
T ss_dssp TCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHH
T ss_pred CCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHH
Confidence 689999999999987532 233456889999999999998643 3456677899999999999987543 3
Q ss_pred hhcCCCCCCeeeccCCccccc
Q psy12044 166 AFVGLDSLEWLKLDNNKITTI 186 (767)
Q Consensus 166 ~~~~l~~L~~L~Ls~N~Lt~i 186 (767)
.+...++|+.|+|++|.|+..
T Consensus 234 ~L~~~~~L~~L~Ls~N~i~~~ 254 (372)
T 3un9_A 234 AAREHPSLELLHLYFNELSSE 254 (372)
T ss_dssp HHHHCSSCCEEECTTSSCCHH
T ss_pred HHHhCCCCCEEeccCCCCCHH
Confidence 455678999999999999853
No 144
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=98.63 E-value=1.8e-09 Score=125.11 Aligned_cols=157 Identities=11% Similarity=0.074 Sum_probs=95.0
Q ss_pred CCCccEEEeeCCCCCCCC-chhhhccCCCCccEEEccC-----------CCCCccC-cccccCCCCCCEEEccCCCCCCC
Q psy12044 48 DPNTQVLDYTGNNLKTLH-NEKFQKMGLVNLQKIYLSR-----------CRISVID-SKAFRGLTNLVDLDFSHNVLQTV 114 (767)
Q Consensus 48 ~~~L~~L~Ls~N~L~~l~-~~~f~~~~L~~L~~L~Ls~-----------N~L~~i~-p~~f~~L~~L~~L~Ls~N~Lt~l 114 (767)
.++|+.|+|+ +.+.... ...+. .+++|+.|+|++ |.++... ...+.++++|++|+|+.|.+++.
T Consensus 317 ~~~L~~L~L~-~~~~~~~l~~~~~--~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~ 393 (592)
T 3ogk_B 317 CPNLEVLETR-NVIGDRGLEVLAQ--YCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNE 393 (592)
T ss_dssp CTTCCEEEEE-GGGHHHHHHHHHH--HCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHH
T ss_pred CcCCCEEecc-CccCHHHHHHHHH--hCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHH
Confidence 5678888888 4444322 22223 367788888883 5555432 22244577888888877777764
Q ss_pred CCCCCCC-CCCCcEEECC----CCcCccccc-----CCcCCCCCccEEeccCCC--ccccchhhhc-CCCCCCeeeccCC
Q psy12044 115 PSDTFPD-YPSLMKLTLS----GNPIKQIKT-----GAFQPLSYLVTLELSKCG--IEVIEDAAFV-GLDSLEWLKLDNN 181 (767)
Q Consensus 115 ~p~~f~~-l~~L~~L~Ls----~N~l~~l~~-----~~~~~l~~L~~L~Ls~N~--L~~i~~~~~~-~l~~L~~L~Ls~N 181 (767)
....+.. +++|+.|+|+ .|.+++.+. ..+.++++|+.|+|+.|. +++.....+. .+++|+.|+|++|
T Consensus 394 ~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n 473 (592)
T 3ogk_B 394 SLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYV 473 (592)
T ss_dssp HHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSC
T ss_pred HHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCC
Confidence 4444443 6778888885 666765421 224557778888876433 5544433333 3677888888887
Q ss_pred cccc--ccCCCCCCCCcccccCCCCCCC
Q psy12044 182 KITT--ISGSNILPTGLHGIDLHHNPWT 207 (767)
Q Consensus 182 ~Lt~--ip~~~~~~~~L~~L~Ls~N~l~ 207 (767)
.++. ++......++|+.|+|++|++.
T Consensus 474 ~l~~~~~~~~~~~~~~L~~L~l~~n~l~ 501 (592)
T 3ogk_B 474 GESDEGLMEFSRGCPNLQKLEMRGCCFS 501 (592)
T ss_dssp CSSHHHHHHHHTCCTTCCEEEEESCCCB
T ss_pred CCCHHHHHHHHhcCcccCeeeccCCCCc
Confidence 7763 2322234467777888887753
No 145
>3knb_B Obscurin-like protein 1; IG-like, titin, OBSL1, ATP-binding, calmodulin-BIN cardiomyopathy, disease mutation, immunoglobulin domain; 1.40A {Homo sapiens} PDB: 2wp3_O* 2wwm_C 2wwk_O
Probab=98.54 E-value=4.5e-08 Score=87.53 Aligned_cols=91 Identities=20% Similarity=0.316 Sum_probs=69.9
Q ss_pred CCCCCCccceeecccccccccccccccCCCcEEEeecCeeccCCCcccccccceeecccCcceeeeEEEEeeeccCCCCc
Q psy12044 255 PQITPSTFYLEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGT 334 (767)
Q Consensus 255 P~i~~~~~~~~v~~G~~vsL~C~a~g~P~p~itW~~~g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~Gt 334 (767)
|.+...+....+.+|+.+.|.|.+.+.|.|.+.|++++..+...... ..... .....|.|.++..+|.|.
T Consensus 14 P~f~~~p~~~~v~~G~~~~l~C~~~G~P~p~v~W~k~g~~l~~~~~~-------~~~~~---~~~~~L~I~~v~~~D~G~ 83 (107)
T 3knb_B 14 PCFLRFPRPVRVVSGAEAELKCVVLGEPPPVVVWEKGGQQLAASERL-------SFPAD---GAEHGLLLTAALPTDAGV 83 (107)
T ss_dssp EEEEECCCCEEEETTSCEEEEEEEEEESCCEEEEEETTEECCCCSSE-------ECCEE---TTEEEEEESSCCGGGCEE
T ss_pred CEEEeCCCcEEEeCCCcEEEEEEEEEecCCEEEEEECcccccceeeE-------EEeec---CceEEEEEecCChhhCEE
Confidence 34444455678889999999999999999999999999877543221 11111 124579999999999999
Q ss_pred eeEeeccCCCCcccceEEEEE
Q psy12044 335 FVCVAENQAGSTSSNYTIRIV 355 (767)
Q Consensus 335 Y~CvA~N~~G~s~~s~sL~V~ 355 (767)
|.|.|.|..|.....+.|.|.
T Consensus 84 Y~C~a~N~~G~~~~~~~l~V~ 104 (107)
T 3knb_B 84 YVCRARNAAGEAYAAAAVTVL 104 (107)
T ss_dssp EEEEEEETTEEEEEEEEEEEE
T ss_pred EEEEEEECCCEEEEEEEEEEE
Confidence 999999999988777766654
No 146
>3knb_A Titin; IG-like, titin, OBSL1, ATP-binding, calmodulin-BIN cardiomyopathy, disease mutation, immunoglobulin domain; 1.40A {Homo sapiens} PDB: 3q5o_A 2wp3_T* 2wwk_T 2wwm_D 2y9r_T*
Probab=98.53 E-value=5.2e-08 Score=85.91 Aligned_cols=91 Identities=23% Similarity=0.375 Sum_probs=68.8
Q ss_pred CCCCccceeecccccccccccccccCCCcEEEeecCeeccCCCcccccccceeecccCcceeeeEEEEeeeccCCCCcee
Q psy12044 257 ITPSTFYLEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFV 336 (767)
Q Consensus 257 i~~~~~~~~v~~G~~vsL~C~a~g~P~p~itW~~~g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~GtY~ 336 (767)
+...+....+.+|+.+.|.|.+.+.|.|.+.|++++..+..... ..+..... .....|.|.++..+|.|.|.
T Consensus 8 i~~~p~~~~v~~G~~~~l~C~~~g~P~p~v~W~k~g~~i~~~~~-----~~~~~~~~---~~~~~L~I~~~~~~D~G~Y~ 79 (100)
T 3knb_A 8 IEALPSDISIDEGKVLTVACAFTGEPTPEVTWSCGGRKIHSQEQ-----GRFHIENT---DDLTTLIIMDVQKQDGGLYT 79 (100)
T ss_dssp ECCCCSEEEEETTSEEEEEEEEEEESCCEEEEEETTEECCTTGG-----GTEEEEEC---SSEEEEEESSCCGGGCEEEE
T ss_pred EEeCCCcEEEeCCCeEEEEEEEEEecCCEEEEEECceEeeeecc-----ceeeeecc---cceEEEEEcCCCccCCEEEE
Confidence 33344567888999999999999999999999999887754321 11111111 12457999999999999999
Q ss_pred EeeccCCCCcccceEEEEE
Q psy12044 337 CVAENQAGSTSSNYTIRIV 355 (767)
Q Consensus 337 CvA~N~~G~s~~s~sL~V~ 355 (767)
|.|.|..|.....+.+.|.
T Consensus 80 C~a~N~~G~~~~~~~l~V~ 98 (100)
T 3knb_A 80 LSLGNEFGSDSATVNIHIR 98 (100)
T ss_dssp EEEEETTEEEEEEEEEEEE
T ss_pred EEEEECCCEEEEEEEEEEE
Confidence 9999999988777766654
No 147
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=98.50 E-value=1e-08 Score=118.68 Aligned_cols=130 Identities=12% Similarity=0.124 Sum_probs=76.1
Q ss_pred CCccEEEeeCCCCCCCCchhhhccCCC-CccEEEccCCC-CCcc-CcccccCCCCCCEEEccCCCCCCCCC----CCCCC
Q psy12044 49 PNTQVLDYTGNNLKTLHNEKFQKMGLV-NLQKIYLSRCR-ISVI-DSKAFRGLTNLVDLDFSHNVLQTVPS----DTFPD 121 (767)
Q Consensus 49 ~~L~~L~Ls~N~L~~l~~~~f~~~~L~-~L~~L~Ls~N~-L~~i-~p~~f~~L~~L~~L~Ls~N~Lt~l~p----~~f~~ 121 (767)
++|++|+|++|.+++.....+... ++ +|+.|+|++|. ++.. .+..+.++++|++|+|++|.+++... ..+..
T Consensus 112 ~~L~~L~L~~~~i~~~~~~~l~~~-~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~ 190 (592)
T 3ogk_B 112 RQLKSVHFRRMIVSDLDLDRLAKA-RADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQH 190 (592)
T ss_dssp TTCCEEEEESCBCCHHHHHHHHHH-HGGGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHH
T ss_pred CCCCeEEeeccEecHHHHHHHHHh-ccccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhc
Confidence 566677777776655444444321 22 37777776665 1110 11222356777777777777655422 12345
Q ss_pred CCCCcEEECCCCcCccccc----CCcCCCCCccEEeccCCCccccchhhhcCCCCCCeeeccC
Q psy12044 122 YPSLMKLTLSGNPIKQIKT----GAFQPLSYLVTLELSKCGIEVIEDAAFVGLDSLEWLKLDN 180 (767)
Q Consensus 122 l~~L~~L~Ls~N~l~~l~~----~~~~~l~~L~~L~Ls~N~L~~i~~~~~~~l~~L~~L~Ls~ 180 (767)
+++|+.|+|++|.++++.. ..+..+++|+.|+|++|.+.+++ ..+..+++|+.|+++.
T Consensus 191 ~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~l~-~~~~~~~~L~~L~l~~ 252 (592)
T 3ogk_B 191 NTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELV-GFFKAAANLEEFCGGS 252 (592)
T ss_dssp CCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGGGH-HHHHHCTTCCEEEECB
T ss_pred CCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHHHH-HHHhhhhHHHhhcccc
Confidence 6777777777777763332 23345677777777777777654 4566677777777764
No 148
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=98.46 E-value=1.8e-08 Score=116.57 Aligned_cols=85 Identities=14% Similarity=0.106 Sum_probs=41.8
Q ss_pred CCCCCcEEECCCCcCcccccCCcCC-CCCccEEeccCCCccccchhhh-cCCCCCCeeeccCCcccccc--CCCCCCCCc
Q psy12044 121 DYPSLMKLTLSGNPIKQIKTGAFQP-LSYLVTLELSKCGIEVIEDAAF-VGLDSLEWLKLDNNKITTIS--GSNILPTGL 196 (767)
Q Consensus 121 ~l~~L~~L~Ls~N~l~~l~~~~~~~-l~~L~~L~Ls~N~L~~i~~~~~-~~l~~L~~L~Ls~N~Lt~ip--~~~~~~~~L 196 (767)
.+++|+.|+|++ .++......+.. +++|+.|+|++|.+++.....+ ..+++|+.|+|++|.++... .....+++|
T Consensus 430 ~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L 508 (594)
T 2p1m_B 430 HCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETM 508 (594)
T ss_dssp HCTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGS
T ss_pred hCCCccEEeecC-cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCC
Confidence 345555555544 333322222222 4556666666666554433333 44566666666666654221 111223556
Q ss_pred ccccCCCCCC
Q psy12044 197 HGIDLHHNPW 206 (767)
Q Consensus 197 ~~L~Ls~N~l 206 (767)
+.|++++|++
T Consensus 509 ~~L~l~~~~~ 518 (594)
T 2p1m_B 509 RSLWMSSCSV 518 (594)
T ss_dssp SEEEEESSCC
T ss_pred CEEeeeCCCC
Confidence 6666666655
No 149
>2kdg_A Myotilin; immonoglobulin domain, actin-binding, structural protein, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens}
Probab=98.38 E-value=2.8e-07 Score=80.10 Aligned_cols=91 Identities=22% Similarity=0.463 Sum_probs=68.0
Q ss_pred CCCCccceeecccccccccccccccCCCcEEEeecCeeccCCCcccccccceeecccCcceeeeEEEEeeeccCCCCcee
Q psy12044 257 ITPSTFYLEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFV 336 (767)
Q Consensus 257 i~~~~~~~~v~~G~~vsL~C~a~g~P~p~itW~~~g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~GtY~ 336 (767)
+...+....+..|..+.|.|.+.+.|.+.+.|.+++..+...... ...... .....|.|.++...|.|.|.
T Consensus 8 ~~~~p~~~~~~~G~~~~l~C~~~g~p~p~v~W~~~g~~~~~~~~~-----~~~~~~----~~~~~L~i~~v~~~D~G~Y~ 78 (100)
T 2kdg_A 8 FIQVPENMSIDEGRFCRMDFKVSGLPAPDVSWYLNGRTVQSDDLH-----KMIVSE----KGLHSLIFEVVRASDAGAYA 78 (100)
T ss_dssp CCCCCCCEEEETTCCEEEEEECEEESCCEEEEEETTEEECCCSSS-----CEEEET----TTEEEEEESSCCGGGCEEEE
T ss_pred EEeCCCCEEecCCCEEEEEEEEEeeCCCEEEEEECCEECcCCCcE-----EEEEcC----CCeEEEEECCCCcccCEEEE
Confidence 333445567889999999999999999999999988776543211 111111 12357999999999999999
Q ss_pred EeeccCCCCcccceEEEEEe
Q psy12044 337 CVAENQAGSTSSNYTIRIVL 356 (767)
Q Consensus 337 CvA~N~~G~s~~s~sL~V~~ 356 (767)
|.+.|..|.....+.+.|..
T Consensus 79 C~a~n~~g~~~~~~~l~V~~ 98 (100)
T 2kdg_A 79 CVAKNRAGEATFTVQLDVLA 98 (100)
T ss_dssp EEEEETTEEEEEEEEEEEEC
T ss_pred EEEEcCCCeEEEEEEEEEEe
Confidence 99999999877777766654
No 150
>1wit_A Twitchin 18TH IGSF module; immunoglobulin superfamily, I SET, muscle protein; NMR {Caenorhabditis elegans} SCOP: b.1.1.4 PDB: 1wiu_A
Probab=98.38 E-value=2.1e-07 Score=80.12 Aligned_cols=82 Identities=15% Similarity=0.319 Sum_probs=63.1
Q ss_pred ccceeecccccccccccccccCCCcEEEeecC--eeccCCCcccccccceeecccCcceeeeEEEEeeeccCCCCceeEe
Q psy12044 261 TFYLEIQEGKNVSLLCKVSAIPEAKITWLFDG--VPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCV 338 (767)
Q Consensus 261 ~~~~~v~~G~~vsL~C~a~g~P~p~itW~~~g--~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~GtY~Cv 338 (767)
.....+..|+.+.|.|.+.+.|.|.+.|.+++ ..+..... .. .....+.|.|.++..+|.|.|.|.
T Consensus 9 ~~~~~v~~G~~~~l~C~~~g~P~p~i~W~k~~~~~~~~~~~~-------~~-----~~~~~~~L~i~~~~~~D~G~Y~C~ 76 (93)
T 1wit_A 9 SRKIKIKAGFTHNLEVDFIGAPDPTATWTVGDSGAALAPELL-------VD-----AKSSTTSIFFPSAKRADSGNYKLK 76 (93)
T ss_dssp CCEEEECTTBCCEEEEEEECCSSCEEEEECSTTTCBCSTTSE-------EE-----EETTEEEEECTTBCGGGCEEEEEE
T ss_pred CCceEEeCCCEEEEEEEEEEcCCCEEEEEECCCCcccCCcEE-------EE-----ecCCEEEEEECCCChhcCEEEEEE
Confidence 44567889999999999999999999999988 65533211 00 012346799999999999999999
Q ss_pred eccCCCCcccceEEEE
Q psy12044 339 AENQAGSTSSNYTIRI 354 (767)
Q Consensus 339 A~N~~G~s~~s~sL~V 354 (767)
|.|..|.....+.+.|
T Consensus 77 a~N~~G~~~~~~~l~V 92 (93)
T 1wit_A 77 VKNELGEDEAIFEVIV 92 (93)
T ss_dssp EEETTEEEEEEEEEEE
T ss_pred EEcCCCeEEEEEEEEE
Confidence 9999997766655543
No 151
>2kkq_A Myotilin; unknown function, actin-binding, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens}
Probab=98.37 E-value=8.1e-07 Score=80.19 Aligned_cols=95 Identities=26% Similarity=0.416 Sum_probs=71.0
Q ss_pred CCCCCCccceeecccccccccccccccCCCcEEEeecCeeccCCCcccccccceeecccCcceeeeEEEEeeeccCCCCc
Q psy12044 255 PQITPSTFYLEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGT 334 (767)
Q Consensus 255 P~i~~~~~~~~v~~G~~vsL~C~a~g~P~p~itW~~~g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~Gt 334 (767)
|.+...+....+.+|+.+.|.|.+.+.|.+.+.|.+++..+.... ..+.....+ .....|.|.++...|.|.
T Consensus 16 p~f~~~p~~~~v~~G~~v~L~C~~~g~p~p~v~W~k~~~~~~~~~------~~~~~~~~~--~~~~~L~I~~v~~~D~G~ 87 (116)
T 2kkq_A 16 PMFIYKPQSKKVLEGDSVKLECQISAIPPPKLFWKRNNEMVQFNT------DRISLYQDN--TGRVTLLIKDVNKKDAGW 87 (116)
T ss_dssp CCBSSCCCCEEEETTEEEEEEEEBCCBSCCEEEEEETTEECCCCB------TTEEEEECT--TCEEEEEEEEECGGGCEE
T ss_pred CeEEeCCCcEEEeCCCcEEEEEEEeccCCCEEEEEECCEECcCCC------CeEEEEeCC--CCeEEEEECCCCcccCEE
Confidence 445555566788999999999999999999999999887664321 111111111 123579999999999999
Q ss_pred eeEeeccCCCCcccceEEEEEee
Q psy12044 335 FVCVAENQAGSTSSNYTIRIVLK 357 (767)
Q Consensus 335 Y~CvA~N~~G~s~~s~sL~V~~~ 357 (767)
|.|.+.|..|.....+.+.|...
T Consensus 88 Y~C~a~N~~G~~~~~~~l~V~~~ 110 (116)
T 2kkq_A 88 YTVSAVNEAGVTTCNTRLDVTAR 110 (116)
T ss_dssp EEEEEEETTEEEEEEEEEEEECC
T ss_pred EEEEEEcCCCeEEEEEEEEEeCC
Confidence 99999999998877777766653
No 152
>2cqv_A MLCK, myosin light chain kinase, smooth muscle and non- muscle isozymes; IG fold, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4
Probab=98.36 E-value=5.2e-07 Score=80.79 Aligned_cols=94 Identities=23% Similarity=0.320 Sum_probs=72.4
Q ss_pred CCCCCCccceeecccccccccccccccCCCcEEEeecCeeccCCCcccccccceeecccCcceeeeEEEEeeeccCCCCc
Q psy12044 255 PQITPSTFYLEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGT 334 (767)
Q Consensus 255 P~i~~~~~~~~v~~G~~vsL~C~a~g~P~p~itW~~~g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~Gt 334 (767)
|.+........+..|+.+.|.|.+.+.|.+.+.|++++..+..... +.... ......|.|.++...|.|.
T Consensus 8 p~i~~~~~~~~v~~G~~v~l~C~~~g~p~p~i~W~k~~~~~~~~~~-------~~~~~---~~~~~~L~I~~v~~~D~G~ 77 (114)
T 2cqv_A 8 PQIIQFPEDQKVRAGESVELFGKVTGTQPITCTWMKFRKQIQESEH-------MKVEN---SENGSKLTILAARQEHCGC 77 (114)
T ss_dssp CEESCCCCSEEEETTCCEEEEEEEESSSSCEEEEEESSSBCCCSSS-------EEEEE---CSSEEEEEETTCCTTTCEE
T ss_pred CEEEeCCCCeEEeCCCeEEEEEEEEcCCCCEEEEEECCEECcCCCC-------EEEEE---cCCEEEEEECCCChhcCEE
Confidence 4444455567888999999999999999999999998876643221 11111 1225689999999999999
Q ss_pred eeEeeccCCCCcccceEEEEEeec
Q psy12044 335 FVCVAENQAGSTSSNYTIRIVLKE 358 (767)
Q Consensus 335 Y~CvA~N~~G~s~~s~sL~V~~~~ 358 (767)
|+|.+.|..|.....+.+.|...+
T Consensus 78 Y~C~a~N~~g~~~~~~~l~V~~~p 101 (114)
T 2cqv_A 78 YTLLVENKLGSRQAQVNLTVVDKP 101 (114)
T ss_dssp EEEEEECSSCEEECCEEEEEECSC
T ss_pred EEEEEEECCCcEEEEEEEEEECCC
Confidence 999999999988888888877544
No 153
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=98.36 E-value=6.7e-08 Score=111.77 Aligned_cols=131 Identities=19% Similarity=0.171 Sum_probs=82.9
Q ss_pred CCCccEEEeeCCCCCCCCchhhhccCCCCccEEEccCC-CCCcc-CcccccCCCCCCEEEccCCCCCCCCCCCC----CC
Q psy12044 48 DPNTQVLDYTGNNLKTLHNEKFQKMGLVNLQKIYLSRC-RISVI-DSKAFRGLTNLVDLDFSHNVLQTVPSDTF----PD 121 (767)
Q Consensus 48 ~~~L~~L~Ls~N~L~~l~~~~f~~~~L~~L~~L~Ls~N-~L~~i-~p~~f~~L~~L~~L~Ls~N~Lt~l~p~~f----~~ 121 (767)
.++|+.|+|++|.+++.....+.. .+++|+.|+|++| .++.. .+..+.++++|++|+|++|.+++..+..+ ..
T Consensus 104 ~~~L~~L~L~~~~~~~~~~~~l~~-~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~ 182 (594)
T 2p1m_B 104 YTWLEEIRLKRMVVTDDCLELIAK-SFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDT 182 (594)
T ss_dssp CTTCCEEEEESCBCCHHHHHHHHH-HCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTT
T ss_pred CCCCCeEEeeCcEEcHHHHHHHHH-hCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhc
Confidence 357888888888777655555531 2678888888887 44442 23334467888888888888766543333 35
Q ss_pred CCCCcEEECCCCcCcccccCC----cCCCCCccEEeccCC-CccccchhhhcCCCCCCeeeccCC
Q psy12044 122 YPSLMKLTLSGNPIKQIKTGA----FQPLSYLVTLELSKC-GIEVIEDAAFVGLDSLEWLKLDNN 181 (767)
Q Consensus 122 l~~L~~L~Ls~N~l~~l~~~~----~~~l~~L~~L~Ls~N-~L~~i~~~~~~~l~~L~~L~Ls~N 181 (767)
+++|+.|+|++|. ..+.... +..+++|+.|+|++| .+.+ .+..+..+++|+.|+++.+
T Consensus 183 ~~~L~~L~l~~~~-~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~-l~~~~~~~~~L~~L~l~~~ 245 (594)
T 2p1m_B 183 YTSLVSLNISCLA-SEVSFSALERLVTRCPNLKSLKLNRAVPLEK-LATLLQRAPQLEELGTGGY 245 (594)
T ss_dssp CCCCCEEECTTCC-SCCCHHHHHHHHHHCTTCCEEECCTTSCHHH-HHHHHHHCTTCSEEECSBC
T ss_pred CCcCcEEEecccC-CcCCHHHHHHHHHhCCCCcEEecCCCCcHHH-HHHHHhcCCcceEcccccc
Confidence 6688888888876 2222111 233578888888877 4444 4455666777777765443
No 154
>2edj_A Roundabout homolog 2; KIAA1568 protein, beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.33 E-value=8.9e-07 Score=77.04 Aligned_cols=85 Identities=25% Similarity=0.391 Sum_probs=65.5
Q ss_pred CccceeecccccccccccccccCCCcEEEeecCeeccCCCcccccccceeecccCcceeeeEEEEeeeccCCCCceeEee
Q psy12044 260 STFYLEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCVA 339 (767)
Q Consensus 260 ~~~~~~v~~G~~vsL~C~a~g~P~p~itW~~~g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~GtY~CvA 339 (767)
.+....+..|+.+.|.|.+.+.|.+.+.|.+++..+..... .+... ..+.|.|.++...|.|.|.|.+
T Consensus 14 ~p~~~~v~~G~~~~l~C~~~g~p~p~v~W~~~~~~~~~~~~------~~~~~------~~~~L~i~~v~~~d~G~Y~C~a 81 (100)
T 2edj_A 14 GPANQTLAVDGTALLKCKATGDPLPVISWLKEGFTFPGRDP------RATIQ------EQGTLQIKNLRISDTGTYTCVA 81 (100)
T ss_dssp CCCCEEEESSSEEEECCEEECSSCCEEEEEESSSEESSSCS------SCEEC------TTCCEEEESCCTTTCCEEEEEE
T ss_pred CcCCEEEcCCCcEEEEEEEEEcCCCEEEEEECCEECCCCCC------CEEEc------CCCEEEEccCCcccCEEEEEEE
Confidence 34456778999999999999999999999998876642111 01111 1246999999999999999999
Q ss_pred ccCCCCcccceEEEEEe
Q psy12044 340 ENQAGSTSSNYTIRIVL 356 (767)
Q Consensus 340 ~N~~G~s~~s~sL~V~~ 356 (767)
.|..|.....+.+.|..
T Consensus 82 ~n~~g~~~~~~~l~V~~ 98 (100)
T 2edj_A 82 TSSSGETSWSAVLDVTE 98 (100)
T ss_dssp ECSSCCCBCCEEEEEES
T ss_pred EcCCCCEEEEEEEEEec
Confidence 99999888877776653
No 155
>2dm2_A Palladin; beta-sandwich, KIAA0992, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.32 E-value=1e-06 Score=78.26 Aligned_cols=95 Identities=25% Similarity=0.349 Sum_probs=70.3
Q ss_pred CCCCCCccceeecccccccccccccccCCCcEEEeecCeeccCCCcccccccceeecccCcceeeeEEEEeeeccCCCCc
Q psy12044 255 PQITPSTFYLEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGT 334 (767)
Q Consensus 255 P~i~~~~~~~~v~~G~~vsL~C~a~g~P~p~itW~~~g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~Gt 334 (767)
|.+........+.+|..+.|.|.+.+.|.+.+.|++++..+..... .+..... ......|.|.++...|.|.
T Consensus 9 P~~~~~~~~~~v~~G~~v~l~C~~~g~p~p~v~W~k~g~~~~~~~~------~~~~~~~--~~~~~~L~i~~v~~~D~G~ 80 (110)
T 2dm2_A 9 PFFEMKLKHYKIFEGMPVTFTCRVAGNPKPKIYWFKDGKQISPKSD------HYTIQRD--LDGTCSLHTTASTLDDDGN 80 (110)
T ss_dssp CCBSSCCCCEEEETTCCEEEEEEBCCSSCCEEEEECSSCBCCTTCS------SEEEEEC--TTCEEEEEESSCCTTTCSC
T ss_pred CEEEecCcCeEEeCCCeEEEEEEEEecCCCEEEEEECCEECCCCCC------eEEEEEC--CCcEEEEEECCCChhhCEE
Confidence 3444445567788999999999999999999999998876643211 1111111 1123579999999999999
Q ss_pred eeEeeccCCCCcccceEEEEEee
Q psy12044 335 FVCVAENQAGSTSSNYTIRIVLK 357 (767)
Q Consensus 335 Y~CvA~N~~G~s~~s~sL~V~~~ 357 (767)
|.|.+.|..|.....+.+.|...
T Consensus 81 Y~C~a~N~~g~~~~~~~l~V~~~ 103 (110)
T 2dm2_A 81 YTIMAANPQGRISCTGRLMVQAV 103 (110)
T ss_dssp CEEEEECTTCCEEECCCEEEECC
T ss_pred EEEEEEECCCeEEEEEEEEEECC
Confidence 99999999999888777777653
No 156
>3qp3_A Titin; I-SET IG-like, sarcomere, M-BAND, transferase; 2.00A {Homo sapiens}
Probab=98.32 E-value=2.7e-07 Score=80.76 Aligned_cols=93 Identities=27% Similarity=0.410 Sum_probs=69.8
Q ss_pred CCCCCCCccceeecccccccccccccccCCCcEEEeecCeeccCCCcccccccceeecccCcceeeeEEEEeeeccCCCC
Q psy12044 254 EPQITPSTFYLEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNG 333 (767)
Q Consensus 254 ~P~i~~~~~~~~v~~G~~vsL~C~a~g~P~p~itW~~~g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~G 333 (767)
.|.+........+..|+.+.|.|.+.+.|.|.+.|.+++..+..... +.... ......|.|.++..+|.|
T Consensus 8 ~P~~~~~~~~~~v~~G~~v~l~C~~~g~p~p~i~W~k~~~~~~~~~~-------~~~~~---~~~~~~L~i~~~~~~D~G 77 (103)
T 3qp3_A 8 APRITLRMRSHRVPCGQNTRFILNVQSKPTAEVKWYHNGVELQESSK-------IHYTN---TSGVLTLEILDCHTDDSG 77 (103)
T ss_dssp EEEEEECCCCEEEETTCCEEEEEEEEEESCCEEEEEETTEECCCCSS-------EEEEE---ETTEEEEEECSCCGGGCE
T ss_pred CCEEEeCCcceEEeCCCeEEEEEEEEecCCCEEEEEECCEECCCCCC-------EEEEE---CCCEEEEEEcCCCcccCE
Confidence 34444445567788999999999999999999999999877654321 11111 112357999999999999
Q ss_pred ceeEeeccCCCCcccceEEEEEe
Q psy12044 334 TFVCVAENQAGSTSSNYTIRIVL 356 (767)
Q Consensus 334 tY~CvA~N~~G~s~~s~sL~V~~ 356 (767)
.|.|.|.|..|.....+.+.|..
T Consensus 78 ~Y~C~a~N~~G~~~~~~~l~V~~ 100 (103)
T 3qp3_A 78 TYRAVCTNYKGEASDYATLDVTG 100 (103)
T ss_dssp EEEEEEEETTEEEEEEEEEEEEC
T ss_pred EEEEEEEeCCCcEEEEEEEEEEC
Confidence 99999999999887777666643
No 157
>2dm3_A KIAA0992 protein, palladin; beta-sandwich, myopalladin, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.31 E-value=4.3e-07 Score=80.51 Aligned_cols=95 Identities=31% Similarity=0.547 Sum_probs=70.8
Q ss_pred CCCCCCccceeecccccccccccccccCCCcEEEeecCeeccCCCcccccccceeecccCcceeeeEEEEeeeccCCCCc
Q psy12044 255 PQITPSTFYLEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGT 334 (767)
Q Consensus 255 P~i~~~~~~~~v~~G~~vsL~C~a~g~P~p~itW~~~g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~Gt 334 (767)
|.+........+.+|..+.|.|.+.+.|.+.+.|++++..+...... ...... .....|.|.++..+|.|.
T Consensus 10 P~i~~~~~~~~v~~G~~v~l~C~~~g~p~p~v~W~~~g~~~~~~~~~-----~~~~~~----~~~~~L~i~~v~~~D~G~ 80 (110)
T 2dm3_A 10 PHFLQAPGDLTVQEGKLCRMDCKVSGLPTPDLSWQLDGKPVRPDSAH-----KMLVRE----NGVHSLIIEPVTSRDAGI 80 (110)
T ss_dssp CEEEECCCEEEEESSSCBCCEEEEECSSCCEEECBBSSSBCCCCSSE-----EEEECT----TSCEEEEESSCCGGGCSB
T ss_pred CcEEeCCCcEEEeCCCEEEEEEEEEEcCCCEEEEEECCEECCCCCce-----EEEEec----CCeEEEEEeeCCcccCEE
Confidence 33434445678889999999999999999999999987665432211 111111 124579999999999999
Q ss_pred eeEeeccCCCCcccceEEEEEeec
Q psy12044 335 FVCVAENQAGSTSSNYTIRIVLKE 358 (767)
Q Consensus 335 Y~CvA~N~~G~s~~s~sL~V~~~~ 358 (767)
|.|.+.|..|.....+.+.|..++
T Consensus 81 Y~C~a~n~~g~~~~~~~l~V~~~p 104 (110)
T 2dm3_A 81 YTCIATNRAGQNSFSLELVVAAKE 104 (110)
T ss_dssp BCEEEECSSCEEEECCEEEEECCC
T ss_pred EEEEEECCCCEEEEEEEEEEeCCC
Confidence 999999999998888888776644
No 158
>1g1c_A Immunoglobulin-like domain I1 from titin; immunoglobulin domain, beta-sandwhich, I-SET, structural protein; 2.10A {Homo sapiens} SCOP: b.1.1.4
Probab=98.31 E-value=3.2e-07 Score=79.61 Aligned_cols=87 Identities=23% Similarity=0.305 Sum_probs=65.7
Q ss_pred CccceeecccccccccccccccCCCcEEEeecCeeccCCCcccccccceeecccCcceeeeEEEEeeeccCCCCceeEee
Q psy12044 260 STFYLEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCVA 339 (767)
Q Consensus 260 ~~~~~~v~~G~~vsL~C~a~g~P~p~itW~~~g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~GtY~CvA 339 (767)
......+..|+.+.|.|.+.+.|.+.+.|++++..+...... .... .......|.|.++..+|.|.|.|.|
T Consensus 11 ~~~~~~v~~G~~v~l~C~~~g~p~p~v~W~k~g~~~~~~~~~-------~~~~--~~~~~~~L~i~~v~~~D~G~Y~C~a 81 (99)
T 1g1c_A 11 RIQSQTVGQGSDAHFRVRVVGKPDPECEWYKNGVKIERSDRI-------YWYW--PEDNVCELVIRDVTGEDSASIMVKA 81 (99)
T ss_dssp CCCCEEEETTSCEEEEEEEEEESCCEEEEEETTEECCCCSSE-------EEEE--EETTEEEEEECSCCGGGCEEEEEEE
T ss_pred cCcceEEcCCCcEEEEEEEEEeCCCEEEEEECCEECCCCCCE-------EEEE--cCCCEEEEEECCCCcCCCEEEEEEE
Confidence 344567889999999999999999999999998776543211 1100 0112457999999999999999999
Q ss_pred ccCCCCcccceEEEEE
Q psy12044 340 ENQAGSTSSNYTIRIV 355 (767)
Q Consensus 340 ~N~~G~s~~s~sL~V~ 355 (767)
.|..|.....+.+.|.
T Consensus 82 ~N~~g~~~~~~~l~V~ 97 (99)
T 1g1c_A 82 INIAGETSSHAFLLVQ 97 (99)
T ss_dssp EETTEEEEEEEEEEEE
T ss_pred EECCCcEEEEEEEEEe
Confidence 9999988776666554
No 159
>2yr3_A Myosin light chain kinase, smooth muscle; IG domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.30 E-value=4e-07 Score=79.12 Aligned_cols=85 Identities=32% Similarity=0.553 Sum_probs=64.6
Q ss_pred CCCCccceeecccccccccccccccCCCcEEEeecCeeccCCCcccccccceeecccCcceeeeEEEEeeeccCCCCcee
Q psy12044 257 ITPSTFYLEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFV 336 (767)
Q Consensus 257 i~~~~~~~~v~~G~~vsL~C~a~g~P~p~itW~~~g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~GtY~ 336 (767)
+...+....+..|+.+.|.|.+.+.|.|.+.|.+++..+...... .......|.|.++..+|.|.|.
T Consensus 14 ~~~~~~~~~v~~G~~v~l~C~~~g~p~p~v~W~~~g~~~~~~~~~-------------~~~~~~~L~i~~v~~~D~G~Y~ 80 (99)
T 2yr3_A 14 FSSVLKDCAVIEGQDFVLQCSVRGTPVPRITWLLNGQPIQYARST-------------CEAGVAELHIQDALPEDHGTYT 80 (99)
T ss_dssp EEECCCCEEECTTCCEEEECEEEEESCCCCEEEESSSBCSSCCCE-------------EETTEEEEEECSCCTTCCBCEE
T ss_pred eeecCCCCEEeCCCeEEEEEEEeeeCCCeEEEEECCEECcccceE-------------eeCCeEEEEECCCChhhCEEEE
Confidence 333344567889999999999999999999999988766432211 0112467999999999999999
Q ss_pred EeeccCCCCcccceEEEE
Q psy12044 337 CVAENQAGSTSSNYTIRI 354 (767)
Q Consensus 337 CvA~N~~G~s~~s~sL~V 354 (767)
|.+.|..|.....+.+.|
T Consensus 81 C~a~N~~g~~~~~~~l~V 98 (99)
T 2yr3_A 81 CLAENALGQVSCSAWVTV 98 (99)
T ss_dssp EEEECSSCEEEEECCEEE
T ss_pred EEEEECCCeEEEEEEEEE
Confidence 999999998766555443
No 160
>3cx2_A Myosin-binding protein C, cardiac-type; protonation states, actin-binding, cardiomyopathy, cell adhesion, disease mutation, immunoglobulin domain; 1.30A {Homo sapiens} PDB: 2v6h_A 2avg_A
Probab=98.30 E-value=1.1e-06 Score=77.90 Aligned_cols=95 Identities=12% Similarity=0.182 Sum_probs=65.1
Q ss_pred CCCCccceeecccccccccccccccCC---CcEEEeecCeeccCCCcccccccceeec---ccCcceeeeEEEEeeeccC
Q psy12044 257 ITPSTFYLEIQEGKNVSLLCKVSAIPE---AKITWLFDGVPIQNESMSASESHAVYST---EEGTEIKKSELLIYNSNID 330 (767)
Q Consensus 257 i~~~~~~~~v~~G~~vsL~C~a~g~P~---p~itW~~~g~~l~~~s~~~~~~~~~~~~---~~g~~~~~s~L~I~nvs~s 330 (767)
+...+..+.+..|+.++|.|.+.+.|. |.+.|++++....... ... .+.+. ..........|.|.++...
T Consensus 7 f~~~p~~~~v~~G~~v~L~C~~~g~p~~~~p~v~W~k~~~~~~~~~---~~~-~~~~~~~~~~~~~~~~~~L~I~~v~~~ 82 (108)
T 3cx2_A 7 FVMRPQDGEVTVGGSITFSARVAGASLLKPPVVKWFKGKWVDLSSK---VGQ-HLQLHDSYDRASKVYLFELHITDAQPA 82 (108)
T ss_dssp CSBCCCCEEEETTCCEEEEEEEECC-CCSCCEEEEEETTTEEGGGG---CBT-TEEEEEEEETTTTEEEEEEEECSCCGG
T ss_pred EEeCCCcEEEeCCCCEEEEEEECCCccCCCcEEEEccCCccccccc---CCc-eEEEeeEEecccccceEEEEEecCCCc
Confidence 333445677889999999999999998 9999998652211100 000 11111 0111223578999999999
Q ss_pred CCCceeEeeccCCCCcccceEEEEE
Q psy12044 331 DNGTFVCVAENQAGSTSSNYTIRIV 355 (767)
Q Consensus 331 D~GtY~CvA~N~~G~s~~s~sL~V~ 355 (767)
|.|.|.|.+.|..|...+.+.|.|.
T Consensus 83 D~G~Y~C~a~N~~G~~~~~~~L~V~ 107 (108)
T 3cx2_A 83 FTGSYRCEVSTKDKFDCSNFNLTVH 107 (108)
T ss_dssp GCEEEEEEEECSSCEEEEEEEEEEE
T ss_pred cCEEEEEEEecCCCceEEEEEEEEe
Confidence 9999999999999988877777653
No 161
>3kvq_A Vascular endothelial growth factor receptor 2; vegfr2, angiogenesis, ATP-binding, developmental protein, differentiation, glycoprotein; 2.70A {Homo sapiens} SCOP: b.1.1.0
Probab=98.27 E-value=8.3e-07 Score=78.23 Aligned_cols=91 Identities=21% Similarity=0.300 Sum_probs=61.2
Q ss_pred CCCCCCccceeecccccccccccccccCCCcEEEeecCeeccCCCcccccccceeecccCcceeeeEEEEeeeccCCCCc
Q psy12044 255 PQITPSTFYLEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGT 334 (767)
Q Consensus 255 P~i~~~~~~~~v~~G~~vsL~C~a~g~P~p~itW~~~g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~Gt 334 (767)
|.+........+..|+.+.|.|.+.+.|.+.+.|.+++..+..... .... ...+.|.|.++..+|.|.
T Consensus 11 P~~~~~~~~~~v~~G~~v~l~C~~~g~p~p~i~W~~~~~~~~~~~~-------~~~~-----~~~~~L~i~~v~~~D~G~ 78 (108)
T 3kvq_A 11 PTITGNLENQTTSIGESIEVSCTASGNPPPQIMWFKDNETLVEDSG-------IVLK-----DGNRNLTIRRVRKEDEGL 78 (108)
T ss_dssp CCCBSCCCCEEEETTCCEEEECBCC----CCEEEEESSSBCCCBTT-------EEEE-----TTTTEEEECSCCGGGCEE
T ss_pred CceecCCCCeEEeCCCeEEEEEECcCcCCCeEEEEECCeEcccCCC-------eEEe-----CCCcEEEEeecCcccCEE
Confidence 3444445567788999999999999999999999998766543211 1111 123579999999999999
Q ss_pred eeEeeccCCCCcccceEEEEEee
Q psy12044 335 FVCVAENQAGSTSSNYTIRIVLK 357 (767)
Q Consensus 335 Y~CvA~N~~G~s~~s~sL~V~~~ 357 (767)
|.|.+.|..|.....+.+.|...
T Consensus 79 Y~C~a~n~~g~~~~~~~l~V~~~ 101 (108)
T 3kvq_A 79 YTCQACSVLGCAKVEAFFIIEGA 101 (108)
T ss_dssp EEEEEC----CEEEEEEEEEEC-
T ss_pred EEEEEEeCCCceEEEEEEEEeCC
Confidence 99999999999888877777653
No 162
>2eo9_A Roundabout homolog 1; beta-sandwich, IG-fold, H-ROBO-1, deleted in U twenty twenty, neurogenesis, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.26 E-value=1.9e-06 Score=77.58 Aligned_cols=92 Identities=20% Similarity=0.360 Sum_probs=69.5
Q ss_pred CCCCCCccceeecccccccccccccccCCCcEEEeecCeeccCCCcccccccceeecccCcceeeeEEEEeeeccCCCCc
Q psy12044 255 PQITPSTFYLEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGT 334 (767)
Q Consensus 255 P~i~~~~~~~~v~~G~~vsL~C~a~g~P~p~itW~~~g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~Gt 334 (767)
|.+........+..|+.+.|.|.+.+.|.+.+.|++++..+.... ..+... ..+.|.|.++..+|.|.
T Consensus 9 P~i~~~p~~~~v~~G~~v~l~C~~~g~p~p~i~W~k~g~~~~~~~------~~~~~~------~~~~L~i~~v~~~D~G~ 76 (118)
T 2eo9_A 9 PVIRQGPVNQTVAVDGTFVLSCVATGSPVPTILWRKDGVLVSTQD------SRIKQL------ENGVLQIRYAKLGDTGR 76 (118)
T ss_dssp CCCSBCCCCEEEETTCEEEEECBCCCSSCCEEEEEESSSBCCTTS------TTEEEE------ETTEEEEESCCGGGCCC
T ss_pred CEEEcCCCCEEEcCCCeEEEEEEEEecCCCEEEEEECCEECcCCC------CeEEEc------cCCEEEEccCCcCCCEE
Confidence 344444556778899999999999999999999999887664311 111111 13479999999999999
Q ss_pred eeEeeccCCCCcccceEEEEEeec
Q psy12044 335 FVCVAENQAGSTSSNYTIRIVLKE 358 (767)
Q Consensus 335 Y~CvA~N~~G~s~~s~sL~V~~~~ 358 (767)
|.|.+.|..|.....+.+.|....
T Consensus 77 Y~C~a~n~~g~~~~~~~l~V~~~~ 100 (118)
T 2eo9_A 77 YTCIASTPSGEATWSAYIEVQEFG 100 (118)
T ss_dssp EEEEEECSSCEEEEECCEEEECCS
T ss_pred EEEEEEcCCCcEEEEEEEEEEeCC
Confidence 999999999988777777776543
No 163
>1gxe_A Myosin binding protein C, cardiac-type; cytoskeleton, muscle, IGI, thick filament, immunoglobulin domain; NMR {Homo sapiens} SCOP: b.1.1.4
Probab=98.25 E-value=1.2e-06 Score=82.16 Aligned_cols=91 Identities=14% Similarity=0.253 Sum_probs=62.5
Q ss_pred ccceeecccccccccccccccCCCcEEEeecCeeccC----------------------CCcccccccceeecccCccee
Q psy12044 261 TFYLEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQN----------------------ESMSASESHAVYSTEEGTEIK 318 (767)
Q Consensus 261 ~~~~~v~~G~~vsL~C~a~g~P~p~itW~~~g~~l~~----------------------~s~~~~~~~~~~~~~~g~~~~ 318 (767)
+..+.+..|..+.|.|.+.|.|.|.++|.+++..... ..........+.... ...
T Consensus 25 p~~~~v~~G~~v~L~C~~~G~P~P~i~W~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~r~~i~~---~~~ 101 (139)
T 1gxe_A 25 PDTIVVVAGNKLRLDVPISGDPAPTVIWQKAITQGNKAPARPAPDAPEDTGDSDEWVFDKKLLCETEGRVRVET---TKD 101 (139)
T ss_dssp CCEEEESSSSCCCCEEECCSBSCCEEEEEEECCCSCSSCCCCCCCCCCCCCCSSCCCCSCCCCCSCSSSCEEEE---ETT
T ss_pred CCCEEEeCCCeEEEEEEEEEcCCCeEEEEECCcccccccccccccccccccccccccccceeecCCCCeEEEEe---CCC
Confidence 3467889999999999999999999999998721100 000000000111111 112
Q ss_pred eeEEEEeeeccCCCCceeEeeccCCCCcccceEEEE
Q psy12044 319 KSELLIYNSNIDDNGTFVCVAENQAGSTSSNYTIRI 354 (767)
Q Consensus 319 ~s~L~I~nvs~sD~GtY~CvA~N~~G~s~~s~sL~V 354 (767)
.+.|.|.++...|.|.|.|.|.|..|.....+.+.|
T Consensus 102 ~s~L~I~~v~~~DsG~Y~C~A~N~~G~~~~~~~L~V 137 (139)
T 1gxe_A 102 RSIFTVEGAEKEDEGVYTVTVKNPVGEDQVNLTVKV 137 (139)
T ss_dssp EEEEECSCCCTTTCEEEEEEEECSSCEEEEEEEEEE
T ss_pred EEEEEECCCCcccCEEEEEEEEeCCceEEEEEEEEE
Confidence 467999999999999999999999998777666654
No 164
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.24 E-value=5.2e-07 Score=98.54 Aligned_cols=154 Identities=16% Similarity=0.141 Sum_probs=102.6
Q ss_pred CCCccEEEeeCCCCCC-----C----CchhhhccCCCCccEEEccCCCCCccCcccccCCCCCCEEEccCCCCCCCCCCC
Q psy12044 48 DPNTQVLDYTGNNLKT-----L----HNEKFQKMGLVNLQKIYLSRCRISVIDSKAFRGLTNLVDLDFSHNVLQTVPSDT 118 (767)
Q Consensus 48 ~~~L~~L~Ls~N~L~~-----l----~~~~f~~~~L~~L~~L~Ls~N~L~~i~p~~f~~L~~L~~L~Ls~N~Lt~l~p~~ 118 (767)
+++|+.|.|..+.+.. + ....+. .+++|+.|+|++|.-..+.+ +. +++|+.|+|..|.++......
T Consensus 138 l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~--~~P~L~~L~L~g~~~l~l~~--~~-~~~L~~L~L~~~~l~~~~l~~ 212 (362)
T 2ra8_A 138 FAHFEGLFWGDIDFEEQEISWIEQVDLSPVLD--AMPLLNNLKIKGTNNLSIGK--KP-RPNLKSLEIISGGLPDSVVED 212 (362)
T ss_dssp HTTCSEEEECCCCTTTCCGGGCBCCBCHHHHH--TCTTCCEEEEECCBTCBCCS--CB-CTTCSEEEEECSBCCHHHHHH
T ss_pred cchhhheeecCcchhhcccccccccCHHHHHh--cCCCCcEEEEeCCCCceecc--cc-CCCCcEEEEecCCCChHHHHH
Confidence 4689999997654321 1 123333 37899999999873122222 43 889999999988876432222
Q ss_pred C--CCCCCCcEEECCC--Cc------CcccccCCc--CCCCCccEEeccCCCccccchhhhc---CCCCCCeeeccCCcc
Q psy12044 119 F--PDYPSLMKLTLSG--NP------IKQIKTGAF--QPLSYLVTLELSKCGIEVIEDAAFV---GLDSLEWLKLDNNKI 183 (767)
Q Consensus 119 f--~~l~~L~~L~Ls~--N~------l~~l~~~~~--~~l~~L~~L~Ls~N~L~~i~~~~~~---~l~~L~~L~Ls~N~L 183 (767)
+ ..+++|+.|+|+. |. +..+.+ .+ ..+++|+.|+|++|.+.......+. .+++|+.|+|+.|.|
T Consensus 213 l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~-~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L 291 (362)
T 2ra8_A 213 ILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRP-LFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVL 291 (362)
T ss_dssp HHHSBCTTCCEEEEECBCGGGTCCSCGGGTGG-GSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCC
T ss_pred HHHccCCCCcEEEEeccccccccchhHHHHHH-HHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCC
Confidence 2 2688999999853 22 111111 12 2478999999999998864443343 478999999999999
Q ss_pred cc-----ccCCCCCCCCcccccCCCCCCC
Q psy12044 184 TT-----ISGSNILPTGLHGIDLHHNPWT 207 (767)
Q Consensus 184 t~-----ip~~~~~~~~L~~L~Ls~N~l~ 207 (767)
+. +...+..+++|+.|+|++|.+.
T Consensus 292 ~d~G~~~L~~~L~~l~~L~~L~L~~n~i~ 320 (362)
T 2ra8_A 292 TDEGARLLLDHVDKIKHLKFINMKYNYLS 320 (362)
T ss_dssp BHHHHHHHHTTHHHHTTCSEEECCSBBCC
T ss_pred ChHHHHHHHhhcccCCcceEEECCCCcCC
Confidence 85 3332223478999999999876
No 165
>1nct_A Titin; cell adhesion, glycoprotein, transmembrane, repeat, brain, immunoglobulin fold, alternative splicing, signal, muscle protein; NMR {Homo sapiens} SCOP: b.1.1.4 PDB: 1ncu_A 1tnm_A 1tnn_A
Probab=98.23 E-value=7.6e-07 Score=78.99 Aligned_cols=90 Identities=23% Similarity=0.413 Sum_probs=67.4
Q ss_pred CCCCCCccceeecccccccccccccccCCCcEEEeecCeeccCCCcccccccceeecccCcceeeeEEEEeeeccCCCCc
Q psy12044 255 PQITPSTFYLEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGT 334 (767)
Q Consensus 255 P~i~~~~~~~~v~~G~~vsL~C~a~g~P~p~itW~~~g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~Gt 334 (767)
|.+...+....+..|+.+.|.|.+.+.|.|.+.|.+++..+..... +.... ......|.|.++...|.|.
T Consensus 15 ~~i~~~p~~~~v~~G~~v~L~C~~~g~p~p~v~W~k~g~~l~~~~~-------~~~~~---~~~~~~L~I~~v~~~D~G~ 84 (106)
T 1nct_A 15 ARILTKPRSMTVYEGESARFSCDTDGEPVPTVTWLRKGQVLSTSAR-------HQVTT---TKYKSTFEISSVQASDEGN 84 (106)
T ss_dssp CEEEECCCCEEESSSSCEECCEEEECSSCCBCCBCSSSSCCTTCSS-------EEEEE---CSSEEEEEECCCCSSCCSE
T ss_pred CEEEECCCCEEEeCCCcEEEEEEEEEcCCCEEEEEECCEECCCCCC-------EEEEE---CCCEEEEEECcCCchhCEE
Confidence 3344445567889999999999999999999999998866543211 11111 1124689999999999999
Q ss_pred eeEeeccCCCCcccceEEEE
Q psy12044 335 FVCVAENQAGSTSSNYTIRI 354 (767)
Q Consensus 335 Y~CvA~N~~G~s~~s~sL~V 354 (767)
|.|.+.|..|.....+.+.|
T Consensus 85 Y~C~a~N~~G~~~~~~~l~V 104 (106)
T 1nct_A 85 YSVVVENSEGKQEAEFTLTI 104 (106)
T ss_dssp EEECCBCSSCBCCEEEEEEE
T ss_pred EEEEEEeCCCeEEEEEEEEE
Confidence 99999999998777666654
No 166
>1u2h_A APEG-1, aortic preferentially expressed protein 1; structural genomics, IG-fold I-SET, RGD motif, homophilic adhesion, arterial smooth muscle cells; 0.96A {Homo sapiens}
Probab=98.22 E-value=6.8e-07 Score=77.45 Aligned_cols=86 Identities=20% Similarity=0.374 Sum_probs=64.6
Q ss_pred ccceeecccccccccccccccCCCcEEEeecCeeccCCCcccccccceeecccCcceeeeEEEEeeeccCCCCceeEeec
Q psy12044 261 TFYLEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCVAE 340 (767)
Q Consensus 261 ~~~~~v~~G~~vsL~C~a~g~P~p~itW~~~g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~GtY~CvA~ 340 (767)
+....+..|..+.|.|.+.+.|.+.+.|.+++..+..... .+.... ......|.|.++...|.|.|.|.+.
T Consensus 12 ~~~~~v~~G~~v~l~C~~~g~p~p~v~W~k~~~~~~~~~~------~~~~~~---~~~~~~L~i~~~~~~D~G~Y~C~a~ 82 (99)
T 1u2h_A 12 LMDQSVREGQDVIMSIRVQGEPKPVVSWLRNRQPVRPDQR------RFAEEA---EGGLCRLRILAAERGDAGFYTCKAV 82 (99)
T ss_dssp CCCEEEETTCCEEEEEEEEEESCCEEEEEETTEECCCBTT------EEEEEC---GGGEEEEEESSCCGGGCEEEEEEEE
T ss_pred CCceEecCCCEEEEEEEEEEcCCCEEEEEECCEECCCCCC------EEEEEC---CCCEEEEEEccCCcCCCEEEEEEEE
Confidence 3456788999999999999999999999998876643221 111111 1123479999999999999999999
Q ss_pred cCCCCcccceEEEEE
Q psy12044 341 NQAGSTSSNYTIRIV 355 (767)
Q Consensus 341 N~~G~s~~s~sL~V~ 355 (767)
|..|.....+.+.|.
T Consensus 83 N~~g~~~~~~~l~V~ 97 (99)
T 1u2h_A 83 NEYGARQCEARLEVR 97 (99)
T ss_dssp ETTEEEEEEEEEEEE
T ss_pred ECCCceeEEEEEEEE
Confidence 999987776666553
No 167
>1wwb_X Protein (brain derived neurotrophic factor receptor TRKB); TRK receptor, receptor tyrosine kinase, 3D-domain swapping, transferase; 2.10A {Homo sapiens} SCOP: b.1.1.4 PDB: 1hcf_X
Probab=98.22 E-value=1.1e-06 Score=77.51 Aligned_cols=83 Identities=13% Similarity=0.278 Sum_probs=62.6
Q ss_pred ccccccccccccccCCCcEEEeecCeeccCCCcccccccceeecccCcceeeeEEEEeeeccCCCCceeEeeccCCCCcc
Q psy12044 268 EGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCVAENQAGSTS 347 (767)
Q Consensus 268 ~G~~vsL~C~a~g~P~p~itW~~~g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~GtY~CvA~N~~G~s~ 347 (767)
.+..+.+.|.+.|.|.|.++|.+++..+...... .......+.....+.|.|.++..+|.|.|+|.|.|..|...
T Consensus 15 ~~~~~~~~c~v~G~P~P~i~W~k~g~~l~~~~~~-----~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~ 89 (103)
T 1wwb_X 15 SDHHWCIPFTVKGNPKPALQWFYNGAILNESKYI-----CTKIHVTNHTEYHGCLQLDNPTHMNNGDYTLIAKNEYGKDE 89 (103)
T ss_dssp CCCEEEEEEEEECSSCCEEEEEETTEEECCCSSE-----EEEEEEECSSEEEEEEEEESCCGGGCEEEEEEEECSSCEEE
T ss_pred ECcEEEEEEEEEEeCCCEEEEEECCEECCCCCcE-----eEEEEecCCcEEEEEEEECCCCcccCEEEEEEEEeCCCcEe
Confidence 4567889999999999999999999877654211 01111123334567799999999999999999999999987
Q ss_pred cceEEEEE
Q psy12044 348 SNYTIRIV 355 (767)
Q Consensus 348 ~s~sL~V~ 355 (767)
..+.+.|.
T Consensus 90 ~~~~l~V~ 97 (103)
T 1wwb_X 90 KQISAHFM 97 (103)
T ss_dssp EEEEECCS
T ss_pred EEEEEEEC
Confidence 77766554
No 168
>2ckn_A Basic fibroblast growth factor receptor 1; kinase, transferase, heparin-binding, nucleotide-binding, immunoglobulin domain, alternatice splicing; NMR {Mus musculus}
Probab=98.22 E-value=1.1e-06 Score=75.99 Aligned_cols=83 Identities=22% Similarity=0.440 Sum_probs=62.9
Q ss_pred CCCCccceeecccccccccccccccCCCcEEEeecCeeccCCCcccccccceeecccCcceeeeEEEEeeeccCCCCcee
Q psy12044 257 ITPSTFYLEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFV 336 (767)
Q Consensus 257 i~~~~~~~~v~~G~~vsL~C~a~g~P~p~itW~~~g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~GtY~ 336 (767)
+........+..|+.+.|.|.+.+.| +.+.|.+++..+..... +.. ....|.|.++...|.|.|.
T Consensus 12 ~~~~~~~~~v~~G~~v~l~C~~~g~p-p~i~W~k~g~~~~~~~~-------~~~-------~~~~L~i~~~~~~D~G~Y~ 76 (95)
T 2ckn_A 12 VPVEVESLLVHPGDLLQLRCRLRDDV-QSINWLRDGVQLVESNR-------TRI-------TGEEVEVRDSIPADSGLYA 76 (95)
T ss_dssp BTTBBCCEEECTTSCEEEECCEESSC-CEEEEEBTTBCCCCCSS-------EEE-------CSSEEEESSCCGGGSEEEE
T ss_pred EEcCcceEEEcCCCeEEEEEECCCCC-CceEEEECCEecCCCCC-------EEE-------eCCEEEECCCChHHCEEEE
Confidence 33344566788999999999999988 89999998876643211 111 1357999999999999999
Q ss_pred EeeccCCCCcccceEEEE
Q psy12044 337 CVAENQAGSTSSNYTIRI 354 (767)
Q Consensus 337 CvA~N~~G~s~~s~sL~V 354 (767)
|.+.|..|.....+.+.|
T Consensus 77 C~a~n~~g~~~~~~~l~V 94 (95)
T 2ckn_A 77 CVTSSPSGSDTTYFSVNV 94 (95)
T ss_dssp EEEEETTEEEEEEEEEEE
T ss_pred EEeccCCCcEEEEEEEEE
Confidence 999999988766655544
No 169
>2e7c_A Myosin-binding protein C, fast-type; IG-like domain, fast MYBP-C, C-protein, skeletal muscle fast-isoform, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.18 E-value=2.4e-06 Score=76.89 Aligned_cols=84 Identities=14% Similarity=0.277 Sum_probs=65.4
Q ss_pred cceeecccccccccccccccCCCcEEEeecCeeccCCCcccccccceeecccCcceeeeEEEEeeeccCCCCceeEeecc
Q psy12044 262 FYLEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCVAEN 341 (767)
Q Consensus 262 ~~~~v~~G~~vsL~C~a~g~P~p~itW~~~g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~GtY~CvA~N 341 (767)
....+..|+.+.|.|.+.+.|.|.+.|.+++..+..... .+. .......|.|.++...|.|.|.|.|.|
T Consensus 32 ~~~~v~~G~~~~l~C~~~g~P~p~i~W~k~g~~l~~~~~--------~~~---~~~~~~~L~i~~~~~~D~G~Y~C~a~N 100 (118)
T 2e7c_A 32 QTYIRKVGEQLNLVVPFQGKPRPQVVWTKGGAPLDTSRV--------HVR---TSDFDTVFFVRQAARSDSGEYELSVQI 100 (118)
T ss_dssp SCEEEESSSCEEEEEEEEEESCCEEEEEETTEECCCSSC--------EEE---ECSSEEEEEESSCCTTTCEEEEEEEEC
T ss_pred CCEEEECCCEEEEEEEEccCCCCEEEEEECCEECCCCcE--------EEE---ECCCeEEEEECCCChhcCEEEEEEEEe
Confidence 456788899999999999999999999999887642111 111 112346799999999999999999999
Q ss_pred CCCCcccceEEEEEe
Q psy12044 342 QAGSTSSNYTIRIVL 356 (767)
Q Consensus 342 ~~G~s~~s~sL~V~~ 356 (767)
..|.....+.+.|..
T Consensus 101 ~~G~~~~~~~l~V~~ 115 (118)
T 2e7c_A 101 ENMKDTATIRIRVVE 115 (118)
T ss_dssp SSCEECCEEEEEEEC
T ss_pred CCCeEEEEEEEEEEc
Confidence 999877777666643
No 170
>3puc_A Titin; I-SET IG-like domain, M-BAND, transferase; 0.96A {Homo sapiens}
Probab=98.16 E-value=1.1e-06 Score=76.11 Aligned_cols=86 Identities=22% Similarity=0.310 Sum_probs=65.0
Q ss_pred CccceeecccccccccccccccCCCcEEEeecCeeccCCCcccccccceeecccCcceeeeEEEEeeeccCCCCceeEee
Q psy12044 260 STFYLEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCVA 339 (767)
Q Consensus 260 ~~~~~~v~~G~~vsL~C~a~g~P~p~itW~~~g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~GtY~CvA 339 (767)
......+..|..+.|.|.+.+.|.+.+.|.+++..+..... +..... .....|.|.++...|.|.|.|.+
T Consensus 12 ~~~~~~v~~G~~~~l~C~~~g~p~p~v~W~~~g~~~~~~~~-------~~~~~~---~~~~~L~i~~~~~~d~G~Y~C~a 81 (99)
T 3puc_A 12 GLQDTTVSSDSVAKFAVKATGEPRPTAIWTKDGKAITQGGK-------YKLSED---KGGFFLEIHKTDTSDSGLYTCTV 81 (99)
T ss_dssp CCCCEEEESSSCEEEEEEEEEESCCEEEEEETTEECCSSSS-------EEEEEE---TTEEEEEECSCCGGGCEEEEEEE
T ss_pred cCccEEEeCCCcEEEEEEEEecCCCEEEEEECCEECcCCCC-------EEEEEe---CCEEEEEECCCCcccCEEEEEEE
Confidence 34456788999999999999999999999998877643221 111111 12357999999999999999999
Q ss_pred ccCCCCcccceEEEEE
Q psy12044 340 ENQAGSTSSNYTIRIV 355 (767)
Q Consensus 340 ~N~~G~s~~s~sL~V~ 355 (767)
.|..|.....+.+.|.
T Consensus 82 ~n~~g~~~~~~~l~V~ 97 (99)
T 3puc_A 82 KNSAGSVSSSCKLTIK 97 (99)
T ss_dssp EETTEEEEEEEEEEEE
T ss_pred EeCCCcEeEEEEEEEE
Confidence 9999987766666553
No 171
>3irg_A Titin; IG-like, titin, OBSL1, complex, alternative splicing, ATP-binding, calcium, calmodulin-binding, cardiomyopathy; 1.30A {Homo sapiens} PDB: 3knb_A 3q5o_A 2wp3_T* 2wwk_T 2wwm_D 2y9r_T*
Probab=98.14 E-value=1.6e-06 Score=74.86 Aligned_cols=89 Identities=22% Similarity=0.376 Sum_probs=65.5
Q ss_pred CCCccceeecccccccccccccccCCCcEEEeecCeeccCCCcccccccceeecccCcceeeeEEEEeeeccCCCCceeE
Q psy12044 258 TPSTFYLEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVC 337 (767)
Q Consensus 258 ~~~~~~~~v~~G~~vsL~C~a~g~P~p~itW~~~g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~GtY~C 337 (767)
...+....+.+|+.+.|.|.+.+.|.+.+.|.+++..+..... ..+..... .....|.|.++...|.|.|.|
T Consensus 9 ~~~~~~~~~~~G~~~~l~C~~~g~p~p~v~W~~~~~~~~~~~~-----~~~~~~~~---~~~~~L~i~~v~~~D~G~Y~C 80 (100)
T 3irg_A 9 EALPSDISIDEGKVLTVACAFTGEPTPEVTWSCGGRKIHSQEQ-----GRFHIENT---DDLTTLIIMDVQKQDGGLYTL 80 (100)
T ss_dssp CCCCSEEEEETTSEEEEEEEEEEESCCEEEEEETTEECCTTGG-----GTEEEEEC---SSEEEEEESSCCGGGCEEEEE
T ss_pred ecCCCcEEEcCCCcEEEEEEEEEcCCCceEEEECCEEeecCCC-----CEEEEEec---CCEEEEEEeecCcccCEEEEE
Confidence 3344556788999999999999999999999998876642211 11111111 124679999999999999999
Q ss_pred eeccCCCCcccceEEEE
Q psy12044 338 VAENQAGSTSSNYTIRI 354 (767)
Q Consensus 338 vA~N~~G~s~~s~sL~V 354 (767)
.+.|..|.....+.+.|
T Consensus 81 ~a~n~~g~~~~~~~l~V 97 (100)
T 3irg_A 81 SLGNEFGSDSATVNIHI 97 (100)
T ss_dssp EEEETTEEEEEEEEEEE
T ss_pred EEEeCCCcEEEEEEEEE
Confidence 99999988766665554
No 172
>2bk8_A Connectin, M1, titin heart isoform N2-B; IG domain, M-BAND, structural protein, muscle, antibo; 1.69A {Homo sapiens}
Probab=98.13 E-value=2.6e-06 Score=73.71 Aligned_cols=85 Identities=24% Similarity=0.334 Sum_probs=64.6
Q ss_pred Cccceeeccccccccccccccc-CCCcEEEeecCeeccCCCcccccccceeecccCcceeeeEEEEeeeccCCCCceeEe
Q psy12044 260 STFYLEIQEGKNVSLLCKVSAI-PEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCV 338 (767)
Q Consensus 260 ~~~~~~v~~G~~vsL~C~a~g~-P~p~itW~~~g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~GtY~Cv 338 (767)
.+....+.+|+.+.|.|.+.+. |.+.+.|++++..+...... .... ......|.|.++...|.|.|.|.
T Consensus 7 ~~~~~~v~~G~~v~l~C~~~g~~p~~~v~W~~~~~~~~~~~~~-------~~~~---~~~~~~L~i~~v~~~D~G~Y~C~ 76 (97)
T 2bk8_A 7 QIMHAVGEEGGHVKYVCKIENYDQSTQVTWYFGVRQLENSEKY-------EITY---EDGVAILYVKDITKLDDGTYRCK 76 (97)
T ss_dssp CCCCEEECTTCCEEEEEEEESCCTTCEEEEEETTEECCSSSSE-------EEEE---ETTEEEEEECSCCGGGCEEEEEE
T ss_pred cCcCEEEcCCCcEEEEEEEeccCCCCEEEEEECCEECcCCCCE-------EEEE---cCCeEEEEEecCChhhCeEEEEE
Confidence 3446778899999999999997 99999999988766432211 1110 11245799999999999999999
Q ss_pred eccCCCCcccceEEEE
Q psy12044 339 AENQAGSTSSNYTIRI 354 (767)
Q Consensus 339 A~N~~G~s~~s~sL~V 354 (767)
+.|..|.....+.+.|
T Consensus 77 a~n~~g~~~~~~~l~V 92 (97)
T 2bk8_A 77 VVNDYGEDSSYAELFV 92 (97)
T ss_dssp EECSSCEEEEEEEEEE
T ss_pred EECCCCeEeEEEEEEE
Confidence 9999998777665554
No 173
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.13 E-value=1.1e-05 Score=88.00 Aligned_cols=124 Identities=20% Similarity=0.271 Sum_probs=56.5
Q ss_pred CCCccEEEccCCCCCccCcccccCCCCCCEEEccCCCCCCCCCCCCCCCCCCcEEECCCCcCcccccCCcCCCCCccEEe
Q psy12044 74 LVNLQKIYLSRCRISVIDSKAFRGLTNLVDLDFSHNVLQTVPSDTFPDYPSLMKLTLSGNPIKQIKTGAFQPLSYLVTLE 153 (767)
Q Consensus 74 L~~L~~L~Ls~N~L~~i~p~~f~~L~~L~~L~Ls~N~Lt~l~p~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~ 153 (767)
+.+|+.+.+.. .+..+...+|.++.+|+.+.+..+ ++.+....|.++.+|+.+.+..+ ++.+...+|.++.+|+.+.
T Consensus 216 ~~~l~~i~~~~-~~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~ 292 (379)
T 4h09_A 216 GKNLKKITITS-GVTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKVV 292 (379)
T ss_dssp CSSCSEEECCT-TCCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCEEE
T ss_pred ccccceeeecc-ceeEEccccccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ceecccccccccccccccc
Confidence 34444444432 233344444444555555554333 44444444444555555544322 4444444455555555555
Q ss_pred ccCCCccccchhhhcCCCCCCeeeccCCccccccCCCCC-CCCcccccC
Q psy12044 154 LSKCGIEVIEDAAFVGLDSLEWLKLDNNKITTISGSNIL-PTGLHGIDL 201 (767)
Q Consensus 154 Ls~N~L~~i~~~~~~~l~~L~~L~Ls~N~Lt~ip~~~~~-~~~L~~L~L 201 (767)
|.++.++.+...+|.++.+|+.+.|.. .++.|....|. ..+|+.+.|
T Consensus 293 l~~~~i~~I~~~aF~~c~~L~~i~lp~-~l~~I~~~aF~~C~~L~~i~i 340 (379)
T 4h09_A 293 MDNSAIETLEPRVFMDCVKLSSVTLPT-ALKTIQVYAFKNCKALSTISY 340 (379)
T ss_dssp ECCTTCCEECTTTTTTCTTCCEEECCT-TCCEECTTTTTTCTTCCCCCC
T ss_pred ccccccceehhhhhcCCCCCCEEEcCc-cccEEHHHHhhCCCCCCEEEE
Confidence 544445444444555555555555432 24444443332 244444444
No 174
>3irg_B Obscurin-like protein 1; IG-like, titin, OBSL1, complex, alternative splicing, ATP-binding, calcium, calmodulin-binding, cardiomyopathy; 1.30A {Homo sapiens} PDB: 3knb_B 2wp3_O* 2wwm_C 2wwk_O
Probab=98.12 E-value=1.6e-06 Score=76.17 Aligned_cols=91 Identities=20% Similarity=0.316 Sum_probs=67.4
Q ss_pred CCCCCCccceeecccccccccccccccCCCcEEEeecCeeccCCCcccccccceeecccCcceeeeEEEEeeeccCCCCc
Q psy12044 255 PQITPSTFYLEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGT 334 (767)
Q Consensus 255 P~i~~~~~~~~v~~G~~vsL~C~a~g~P~p~itW~~~g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~Gt 334 (767)
|.+........+..|+.+.|.|.+.+.|.+.+.|.+++..+...... ..... .....|.|.++..+|.|.
T Consensus 14 P~~~~~~~~~~v~~G~~v~l~C~~~g~p~p~i~W~~~~~~~~~~~~~-------~~~~~---~~~~~L~i~~~~~~D~G~ 83 (107)
T 3irg_B 14 PCFLRFPRPVRVVSGAEAELKCVVLGEPPPVVVWEKGGQQLAASERL-------SFPAD---GAEHGLLLTAALPTDAGV 83 (107)
T ss_dssp EEEEECCCCEEEETTSCEEEEEEEEEESCCEEEEEETTEECCCCSSE-------ECCEE---TTEEEEEESSCCGGGCEE
T ss_pred CeeEcCCccEEEeCCCeEEEEEEEeecCCCEEEEEECCeECCCCCcE-------EEEeC---CCEEEEEEccCCHHhCEE
Confidence 44444445677889999999999999999999999988776432211 11111 123479999999999999
Q ss_pred eeEeeccCCCCcccceEEEEE
Q psy12044 335 FVCVAENQAGSTSSNYTIRIV 355 (767)
Q Consensus 335 Y~CvA~N~~G~s~~s~sL~V~ 355 (767)
|.|.+.|..|.....+.+.|.
T Consensus 84 Y~C~a~n~~g~~~~~~~l~V~ 104 (107)
T 3irg_B 84 YVCRARNAAGEAYAAAAVTVL 104 (107)
T ss_dssp EEEEEEETTEEEEEEEEEEEE
T ss_pred EEEEEEcCCCcEEEEEEEEEE
Confidence 999999999887766666554
No 175
>3caf_A Fibroblast growth factor receptor 2; FGFR2, D2, ATP-binding, disease MU ectodermal dysplasia, glycoprotein, heparin-binding, immuno domain, kinase; 1.96A {Homo sapiens} PDB: 3cu1_A* 3euu_A 3dar_A 1wvz_A
Probab=98.10 E-value=2.1e-06 Score=74.59 Aligned_cols=83 Identities=20% Similarity=0.418 Sum_probs=62.1
Q ss_pred ceeecccccccccccccccCCCcEEEeecCeeccCCCcccccccceeecccCcceeeeEEEEeeeccCCCCceeEeeccC
Q psy12044 263 YLEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCVAENQ 342 (767)
Q Consensus 263 ~~~v~~G~~vsL~C~a~g~P~p~itW~~~g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~GtY~CvA~N~ 342 (767)
...+..|..+.|.|.+.+.|.+.+.|.+++..+...... ..... ....+.|.|.++...|.|.|.|.+.|.
T Consensus 17 ~~~v~~G~~v~l~C~~~g~p~p~v~W~~~~~~~~~~~~~----~~~~~-----~~~~~~L~i~~v~~~D~G~Y~C~a~N~ 87 (100)
T 3caf_A 17 LHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRI----GGYKV-----RNQHWSLIMESVVPSDKGNYTCVVENE 87 (100)
T ss_dssp EEEECTTCCEEEECCEEEESCCEEEEEETTEECCGGGST----TCCEE-----EGGGTEEEECSCCGGGCEEEEEEEEET
T ss_pred EEEecCCCEEEEEEEccccCCCEEEEEECCEEccccccc----ccEEE-----ecCeEEEEEccCCcCCCEEEEEEEEeC
Confidence 456788999999999999999999999988766432211 00000 112357999999999999999999999
Q ss_pred CCCcccceEEEE
Q psy12044 343 AGSTSSNYTIRI 354 (767)
Q Consensus 343 ~G~s~~s~sL~V 354 (767)
.|.....+.+.|
T Consensus 88 ~g~~~~~~~l~V 99 (100)
T 3caf_A 88 YGSINHTYHLDV 99 (100)
T ss_dssp TEEEEEEEEEEE
T ss_pred CCEEEEEEEEEE
Confidence 988766555543
No 176
>1he7_A High affinity nerve growth factor receptor; transferase, TRK-receptor, strand-swapping; 2.0A {Homo sapiens} SCOP: b.1.1.4 PDB: 1wwa_X 1www_X
Probab=98.09 E-value=2.6e-06 Score=78.44 Aligned_cols=85 Identities=19% Similarity=0.318 Sum_probs=63.0
Q ss_pred ccccccccccccccCCCcEEEeecCeeccCCCcccccccceeecc--cCcceeeeEEEEeeeccCCCCceeEeeccCCCC
Q psy12044 268 EGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTE--EGTEIKKSELLIYNSNIDDNGTFVCVAENQAGS 345 (767)
Q Consensus 268 ~G~~vsL~C~a~g~P~p~itW~~~g~~l~~~s~~~~~~~~~~~~~--~g~~~~~s~L~I~nvs~sD~GtY~CvA~N~~G~ 345 (767)
.+..+.|.|.+.|.|.|.|+|+++|..+...... . ..... .+.....+.|.|.++...|.|.|+|.|.|..|.
T Consensus 14 ~~~~~~l~c~v~G~P~P~I~W~knG~~l~~~~~~----~-~~~~~~~~~~~~~~~~L~i~~~~~~D~G~YtC~A~N~~G~ 88 (126)
T 1he7_A 14 EMHHWCIPFSVDGQPAPSLRWLFNGSVLNETSFI----F-TEFLEPAANETVRHGCLRLNQPTHVNNGNYTLLAANPFGQ 88 (126)
T ss_dssp CCCEEEEEEEECCSSCCEEEEEETTEECCCCSSE----E-EEEECCCSSCCCEEEEEEEESCCGGGCEEEEEEEEETTEE
T ss_pred cCccEEEEEEEeeeCCCeEEEEECCEECCCCCce----e-EEEeeccccccccceEEEECcCCCCCCEEEEEEEEECCCe
Confidence 4556789999999999999999999888654321 0 11111 111223578999999999999999999999999
Q ss_pred cccceEEEEEee
Q psy12044 346 TSSNYTIRIVLK 357 (767)
Q Consensus 346 s~~s~sL~V~~~ 357 (767)
....+.+.|...
T Consensus 89 ~~~t~~l~v~~~ 100 (126)
T 1he7_A 89 ASASIMAAFMDN 100 (126)
T ss_dssp EEEEEEECCCSC
T ss_pred EEEEEEEEEEcC
Confidence 877776666543
No 177
>2ens_A Advanced glycosylation END product-specific receptor; beta-sandwich, C2-SET, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.07 E-value=3e-06 Score=73.27 Aligned_cols=75 Identities=28% Similarity=0.511 Sum_probs=58.5
Q ss_pred cceeecccccccccccccccCCCcEEEeecCeeccCCCcccccccceeecccCcceeeeEEEEeeeccCCCCceeEeecc
Q psy12044 262 FYLEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCVAEN 341 (767)
Q Consensus 262 ~~~~v~~G~~vsL~C~a~g~P~p~itW~~~g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~GtY~CvA~N 341 (767)
....+..|..+.|.|.+.+.|.+.+.|++++..+... ....|.|.++...|.|.|.|.+.|
T Consensus 18 ~~~~v~~G~~v~l~C~~~g~p~~~v~W~k~~~~~~~~-------------------~~~~L~i~~v~~~d~G~Y~C~a~n 78 (96)
T 2ens_A 18 EGGAVAPGGTVTLTCEVPAQPSPQIHWMKDGVPLPLP-------------------PSPVLILPEIGPQDQGTYSCVATH 78 (96)
T ss_dssp TTSEECTTCEEEEECCCSSCSSCCCCCEESSSBCSSC-------------------CCSEEEEESCCTTTCEEEECEECC
T ss_pred CCCEEcCCCeEEEEEEEccCCCCEEEEEECCEECcCC-------------------CCCEEEECCCCcccCEEEEEEEEe
Confidence 3456789999999999999999999999987665322 124799999999999999999999
Q ss_pred CCCCcccceEEEEE
Q psy12044 342 QAGSTSSNYTIRIV 355 (767)
Q Consensus 342 ~~G~s~~s~sL~V~ 355 (767)
..|....+..+.+.
T Consensus 79 ~~~~~~~s~~~~v~ 92 (96)
T 2ens_A 79 SSHGPQESRAVSIS 92 (96)
T ss_dssp SSCCCEECCCEEEE
T ss_pred CCCCcEEEEEEEEE
Confidence 76655444444443
No 178
>3m45_A Cell adhesion molecule 2; IG fold, dimer, disulfide bond, glycoprotein, immunoglobulin membrane, transmembrane; HET: NAG; 2.21A {Mus musculus}
Probab=98.07 E-value=5.6e-06 Score=72.48 Aligned_cols=96 Identities=14% Similarity=0.258 Sum_probs=63.6
Q ss_pred CCCCccceeecccccccccccccccCCCcEEEeecCe-eccCCCcccccccceeecccCcceeeeEEEEeeeccCCCCce
Q psy12044 257 ITPSTFYLEIQEGKNVSLLCKVSAIPEAKITWLFDGV-PIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTF 335 (767)
Q Consensus 257 i~~~~~~~~v~~G~~vsL~C~a~g~P~p~itW~~~g~-~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~GtY 335 (767)
+...+....+.+|+.+.|.|.+.+.+.+.+.|.+++. .+............+..... ......|.|.++..+|.|.|
T Consensus 9 ~~~~~~~~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~r~~~~~~--~~~~~~L~I~~v~~~D~G~Y 86 (108)
T 3m45_A 9 QFPLTQNVTVVEGGTAILTCRVDQNDNTSLQWSNPAQQTLYFDDKKALRDNRIELVRA--SWHELSISVSDVSLSDEGQY 86 (108)
T ss_dssp CCEECCCEEEETTSCEEEEEEESSCSSCCEEEECTTCCEEEETTEECSCCTTEEEEEE--SSSEEEEEECSCCGGGCEEE
T ss_pred ccccCCeeEEEeCCcEEEEeEEcCCCccEEEEEcCCCceEEEcCCcccccCcEEEeec--CCCcEEEEECCCChhHCeEE
Confidence 3344556788899999999999999999999998664 22111100000011111111 11456899999999999999
Q ss_pred eEeeccCCCCcccceEEEEE
Q psy12044 336 VCVAENQAGSTSSNYTIRIV 355 (767)
Q Consensus 336 ~CvA~N~~G~s~~s~sL~V~ 355 (767)
.|.+.| .|.....+.+.|.
T Consensus 87 ~C~~~n-~~~~~~~~~L~V~ 105 (108)
T 3m45_A 87 TCSLFT-MPVKTSKAYLTVL 105 (108)
T ss_dssp EEEECS-SSCEEEEEEEEEE
T ss_pred EEEEEc-CCCcEEEEEEEEE
Confidence 999999 7766666555554
No 179
>2edn_A Myosin-binding protein C, fast-type; beta-sandwich, IG-fold, fast MYBP-C, C-protein, skeletal muscle fast isoform, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.07 E-value=7.8e-06 Score=74.39 Aligned_cols=93 Identities=15% Similarity=0.222 Sum_probs=64.3
Q ss_pred Cccceeeccccccccccccccc---CCCcEEEeecCeeccCCCcccccccceeec---ccCcceeeeEEEEeeeccCCCC
Q psy12044 260 STFYLEIQEGKNVSLLCKVSAI---PEAKITWLFDGVPIQNESMSASESHAVYST---EEGTEIKKSELLIYNSNIDDNG 333 (767)
Q Consensus 260 ~~~~~~v~~G~~vsL~C~a~g~---P~p~itW~~~g~~l~~~s~~~~~~~~~~~~---~~g~~~~~s~L~I~nvs~sD~G 333 (767)
.+..+.+.+|+.+.|.|.+.+. |.|.+.|+++........ ...+ +.+. .........+|.|.++...|.|
T Consensus 18 ~P~~v~V~eG~~v~L~C~v~g~~~~p~P~V~W~Kgk~~~~~~~---~~~~-~~~~~~~~~~~~~~~~~L~I~~v~~~D~G 93 (118)
T 2edn_A 18 KPDSVSVETGKDAVVVAKVNGKELPDKPTIKWFKGKWLELGSK---SGAR-FSFKESHNSASNVYTVELHIGKVVLGDRG 93 (118)
T ss_dssp CCCCCEEETTSCEECCEEEETTTSSSCCCCEEEETTTCCCCCS---TTSS-CEEEEEECSSSCEEEEEEEESSCCTTTCS
T ss_pred CCCCeEEeCCCCEEEEEEEeccCCCCCCcEEEeeCCEeccCCC---CccE-EEeccccccccccceEEEEEeeCChhhCE
Confidence 3456788999999999999774 799999998641111100 0001 1111 1111224578999999999999
Q ss_pred ceeEeeccCCCCcccceEEEEEe
Q psy12044 334 TFVCVAENQAGSTSSNYTIRIVL 356 (767)
Q Consensus 334 tY~CvA~N~~G~s~~s~sL~V~~ 356 (767)
.|.|.+.|..|...+.+.|.|..
T Consensus 94 ~Y~Cevsn~~g~~s~~~~L~V~~ 116 (118)
T 2edn_A 94 YYRLEVKAKDTCDSCGFNIDVEA 116 (118)
T ss_dssp CEEEEEECSSCEEEEEECCEEEC
T ss_pred EEEEEEEEcCCcEEEEEEEEEEc
Confidence 99999999999877777776654
No 180
>2yuz_A Myosin-binding protein C, SLOW-type; immunoglobulin domain, SLOW-type myosin-binding protein C, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.06 E-value=8.4e-06 Score=71.52 Aligned_cols=85 Identities=19% Similarity=0.408 Sum_probs=61.4
Q ss_pred CCCCccceeecccccccccccccccCCCcEEEeecCeeccCCCcccccccceeecccCcceeeeEEEEeeeccCCCCcee
Q psy12044 257 ITPSTFYLEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFV 336 (767)
Q Consensus 257 i~~~~~~~~v~~G~~vsL~C~a~g~P~p~itW~~~g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~GtY~ 336 (767)
+........+.+|+.+.|.|.+ .|.+.+.|++++..+..... +.....+ ....|.|.++..+|.|.|.
T Consensus 10 ~~~~~~~~~v~~G~~v~l~C~v--~p~p~v~W~k~g~~l~~~~r-------~~i~~~~---~~~~L~I~~v~~~D~G~Y~ 77 (100)
T 2yuz_A 10 ILTPLTDQTVNLGKEICLKCEI--SENIPGKWTKNGLPVQESDR-------LKVVQKG---RIHKLVIANALTEDEGDYV 77 (100)
T ss_dssp CSBCCCCEEEETTSCCCEEEEC--SSCCCEEEEETTEECCCCSS-------EEEEECS---SEEEEEESSCCGGGCSEEE
T ss_pred EeccCCceEEcCCCCEEEEEEe--CCCCeEEEEECCEECCCCCc-------EEEEEeC---CEEEEEECCCChhhCEEEE
Confidence 3344456788899999999999 88999999999987753321 1111111 2357999999999999999
Q ss_pred EeeccCCCCcccceEEEEE
Q psy12044 337 CVAENQAGSTSSNYTIRIV 355 (767)
Q Consensus 337 CvA~N~~G~s~~s~sL~V~ 355 (767)
|.|.|. .....+.|.|.
T Consensus 78 C~a~N~--~~~~~a~L~V~ 94 (100)
T 2yuz_A 78 FAPDAY--NVTLPAKVHVI 94 (100)
T ss_dssp EEESSS--CCCEEEEEEEE
T ss_pred EEEcCC--CeeEEEEEEEe
Confidence 999997 33445555554
No 181
>2dav_A SLOW MYBP-C, myosin-binding protein C, SLOW-type; IG domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4
Probab=98.05 E-value=6.6e-06 Score=75.76 Aligned_cols=96 Identities=14% Similarity=0.215 Sum_probs=67.6
Q ss_pred CCCCccceeeccccccccccccccc---CCCcEEEeecCeeccCCCcccccccceeec---ccCcceeeeEEEEeeeccC
Q psy12044 257 ITPSTFYLEIQEGKNVSLLCKVSAI---PEAKITWLFDGVPIQNESMSASESHAVYST---EEGTEIKKSELLIYNSNID 330 (767)
Q Consensus 257 i~~~~~~~~v~~G~~vsL~C~a~g~---P~p~itW~~~g~~l~~~s~~~~~~~~~~~~---~~g~~~~~s~L~I~nvs~s 330 (767)
+...+..+.+.+|+.++|.|.+.+. |.|.+.|+++........ ...+ +.+. ..........|.|.++...
T Consensus 10 F~~~P~~v~V~eG~~v~L~C~v~g~~~~p~P~V~W~Kgk~~~~~~~---~~~~-~~~~~~~~~~~~~~~~~L~I~~v~~~ 85 (126)
T 2dav_A 10 FIEKPQGGTVKVGEDITFIAKVKAEDLLRKPTIKWFKGKWMDLASK---AGKH-LQLKETFERHSRVYTFEMQIIKAKDN 85 (126)
T ss_dssp CCSCCCCCEEETTCCEEEEEEEECCCSSSCCEEEEEESSSCCHHHH---TTSS-EEEEEEEETTTTEEEEEEEECSCCTT
T ss_pred EEEcCCCeEEeCCCCEEEEEEEeccCCCCCCcEEEeeCcCcccCCC---CCce-EEEccccccccccceEEEEEccCCcc
Confidence 3344566788999999999998764 899999999631110000 0001 1111 1111223578999999999
Q ss_pred CCCceeEeeccCCCCcccceEEEEEe
Q psy12044 331 DNGTFVCVAENQAGSTSSNYTIRIVL 356 (767)
Q Consensus 331 D~GtY~CvA~N~~G~s~~s~sL~V~~ 356 (767)
|.|.|.|.+.|..|...+.+.|.|..
T Consensus 86 DaG~Y~Cevsn~~g~~~~~~~L~V~~ 111 (126)
T 2dav_A 86 FAGNYRCEVTYKDKFDSCSFDLEVHE 111 (126)
T ss_dssp SCEEEEEEEECSSCEEEECCEEEEEC
T ss_pred cCEEEEEEEEeCCCcEEEEEEEEEEe
Confidence 99999999999999999999998887
No 182
>3bfo_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1 (isoform 2); hydrolase, immunoglobulin domain, nucleus, protease; 1.15A {Homo sapiens}
Probab=98.04 E-value=5.2e-06 Score=70.96 Aligned_cols=68 Identities=19% Similarity=0.432 Sum_probs=56.3
Q ss_pred ccceeecccccccccccccccCCCcEEEeecCeeccCCCcccccccceeecccCcceeeeEEEEeeeccCCCCceeEeec
Q psy12044 261 TFYLEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCVAE 340 (767)
Q Consensus 261 ~~~~~v~~G~~vsL~C~a~g~P~p~itW~~~g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~GtY~CvA~ 340 (767)
+....+..|+.+.|.|.+.+.|.+.+.|.+++..+.... ...|.|.++..+|.|.|.|.+.
T Consensus 10 p~~~~v~~G~~~~l~C~~~g~p~p~i~W~~~~~~~~~~~-------------------~~~L~i~~v~~~d~G~Y~C~a~ 70 (91)
T 3bfo_A 10 PTSQKLMPGSTLVLQCVAVGSPIPHYQWFKNELPLTHET-------------------KKLYMVPYVDLEHQGTYWCHVY 70 (91)
T ss_dssp CCCEEECTTSCEEEECEEECSSCCEEEEEETTEECTTCC-------------------SSEEEESSCCGGGCEEEEEEEE
T ss_pred CCccEecCCCcEEEEEEeccCCCCEEEEEcCCeeCCcCC-------------------CCeEEECCCCHHhCEEEEEEEE
Confidence 334567899999999999999999999999887654321 2478999999999999999999
Q ss_pred cCCCCcc
Q psy12044 341 NQAGSTS 347 (767)
Q Consensus 341 N~~G~s~ 347 (767)
|..|...
T Consensus 71 n~~g~~~ 77 (91)
T 3bfo_A 71 NDRDSQD 77 (91)
T ss_dssp CSSCEEE
T ss_pred cCCCCEE
Confidence 9998644
No 183
>3so5_A LIG-3, leucine-rich repeats and immunoglobulin-like DOMA protein 3; structural genomics, joint center for struct genomics, JCSG; HET: MLY MSE; 1.70A {Mus musculus}
Probab=98.04 E-value=3.4e-06 Score=73.97 Aligned_cols=98 Identities=22% Similarity=0.322 Sum_probs=65.0
Q ss_pred CCCCCCccceeeccccccccccccccc--CCCcEEEeecCeeccCCCcccccccceeecccCcceeeeEEEEeeeccCCC
Q psy12044 255 PQITPSTFYLEIQEGKNVSLLCKVSAI--PEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDN 332 (767)
Q Consensus 255 P~i~~~~~~~~v~~G~~vsL~C~a~g~--P~p~itW~~~g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~ 332 (767)
|.+...+....+..|..+.|.|.+.+. +.+.+.|.+++..+........ ..+...........+.|.|.++...|.
T Consensus 11 P~i~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~i~W~k~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~L~I~~v~~~D~ 88 (112)
T 3so5_A 11 PQITVQPETQSAIXGSDVSFTCSAASSSDSPMTFAWXXDNEALQDAEMENY--AHLRAQGGELMEYTTILRLRNVEFTSE 88 (112)
T ss_dssp CEEEECCCCEEECTTCCEEEEEEEEESCCCCCEEEEEETTEECTTCEEEEE--EETTGGGSSCEEEEEEEEECSCCGGGC
T ss_pred CeEEeCCCCcEEECCCCEEEEEEEecCCCCCEEEEEccCCcccccccccce--eeeeccCCCccccceEEEEeccccccC
Confidence 334444555678899999999999855 4689999998877654321100 000111111223357899999999999
Q ss_pred CceeEeeccCCCCc-ccceEEEE
Q psy12044 333 GTFVCVAENQAGST-SSNYTIRI 354 (767)
Q Consensus 333 GtY~CvA~N~~G~s-~~s~sL~V 354 (767)
|.|.|.+.|..|.. ...+.+.|
T Consensus 89 G~Y~C~a~n~~g~~~s~~~~l~V 111 (112)
T 3so5_A 89 GXYQCVISNHFGSSYSVXAXLTI 111 (112)
T ss_dssp EEEEEEEEETTEEEECCCEEEEE
T ss_pred CeEEEEEEeCCCcEEEeEEEEEe
Confidence 99999999998873 34554443
No 184
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.03 E-value=9e-07 Score=87.12 Aligned_cols=111 Identities=14% Similarity=0.073 Sum_probs=55.4
Q ss_pred CCCccEEEccCC-CCCcc----CcccccCCCCCCEEEccCCCCCCCC----CCCCCCCCCCcEEECCCCcCcccc----c
Q psy12044 74 LVNLQKIYLSRC-RISVI----DSKAFRGLTNLVDLDFSHNVLQTVP----SDTFPDYPSLMKLTLSGNPIKQIK----T 140 (767)
Q Consensus 74 L~~L~~L~Ls~N-~L~~i----~p~~f~~L~~L~~L~Ls~N~Lt~l~----p~~f~~l~~L~~L~Ls~N~l~~l~----~ 140 (767)
.++|+.|+|++| .|... ....+...++|++|+|++|.|.... ...+...++|+.|+|++|.|.... .
T Consensus 35 ~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~ 114 (185)
T 1io0_A 35 DPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALV 114 (185)
T ss_dssp CTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHH
T ss_pred CCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHHH
Confidence 456666666666 65542 2233445556666666666654321 112223345666666666655421 2
Q ss_pred CCcCCCCCccEEec--cCCCccccc----hhhhcCCCCCCeeeccCCccc
Q psy12044 141 GAFQPLSYLVTLEL--SKCGIEVIE----DAAFVGLDSLEWLKLDNNKIT 184 (767)
Q Consensus 141 ~~~~~l~~L~~L~L--s~N~L~~i~----~~~~~~l~~L~~L~Ls~N~Lt 184 (767)
..+....+|+.|+| ++|.|.... ...+...++|+.|+|++|.+.
T Consensus 115 ~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 115 EALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp HGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred HHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence 23444455666666 556555432 123333455555555555543
No 185
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.02 E-value=3.6e-06 Score=91.90 Aligned_cols=132 Identities=16% Similarity=0.161 Sum_probs=92.6
Q ss_pred CCCccEEEeeCCCCCCCCchhhhccCCCCccEEEccCCCCCccCccccc--CCCCCCEEEccC--CCCCC------CCCC
Q psy12044 48 DPNTQVLDYTGNNLKTLHNEKFQKMGLVNLQKIYLSRCRISVIDSKAFR--GLTNLVDLDFSH--NVLQT------VPSD 117 (767)
Q Consensus 48 ~~~L~~L~Ls~N~L~~l~~~~f~~~~L~~L~~L~Ls~N~L~~i~p~~f~--~L~~L~~L~Ls~--N~Lt~------l~p~ 117 (767)
+++|+.|+|++|.-..+.+ +. +++|+.|+|..|.+.......+. .+++|+.|+|+. |...+ +.+
T Consensus 171 ~P~L~~L~L~g~~~l~l~~--~~---~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~- 244 (362)
T 2ra8_A 171 MPLLNNLKIKGTNNLSIGK--KP---RPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRP- 244 (362)
T ss_dssp CTTCCEEEEECCBTCBCCS--CB---CTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGG-
T ss_pred CCCCcEEEEeCCCCceecc--cc---CCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHH-
Confidence 4789999999984122322 32 68999999999988765444444 789999999863 22111 111
Q ss_pred CC--CCCCCCcEEECCCCcCcccccCCc---CCCCCccEEeccCCCccccchh----hhcCCCCCCeeeccCCcccc
Q psy12044 118 TF--PDYPSLMKLTLSGNPIKQIKTGAF---QPLSYLVTLELSKCGIEVIEDA----AFVGLDSLEWLKLDNNKITT 185 (767)
Q Consensus 118 ~f--~~l~~L~~L~Ls~N~l~~l~~~~~---~~l~~L~~L~Ls~N~L~~i~~~----~~~~l~~L~~L~Ls~N~Lt~ 185 (767)
.+ ..+++|+.|+|.+|.+.......+ ..+++|+.|+|+.|.|++.... .+..+++|+.|+|++|.|+.
T Consensus 245 ~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d 321 (362)
T 2ra8_A 245 LFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSD 321 (362)
T ss_dssp GSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCH
T ss_pred HHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCH
Confidence 12 247899999999999874322122 2478999999999999875332 33557899999999998874
No 186
>1fhg_A Telokin; immunoglobulin fold, beta barrel, contractIle protein; 2.00A {Meleagris gallopavo} SCOP: b.1.1.4 PDB: 1tlk_A
Probab=98.01 E-value=3e-06 Score=80.32 Aligned_cols=94 Identities=22% Similarity=0.416 Sum_probs=69.7
Q ss_pred CCCCCCccceeecccccccccccccccCCCcEEEeecCeeccCCCcccccccceeecccCcceeeeEEEEeeeccCCCCc
Q psy12044 255 PQITPSTFYLEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGT 334 (767)
Q Consensus 255 P~i~~~~~~~~v~~G~~vsL~C~a~g~P~p~itW~~~g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~Gt 334 (767)
|.+........+..|..+.|.|.+.+.|.+.+.|++++..+..... +..... ......|.|.++...|.|.
T Consensus 42 P~~~~~~~~~~v~~G~~v~L~C~~~g~P~p~v~W~k~g~~~~~~~~-------~~~~~~--~~~~~~L~I~~v~~~D~G~ 112 (154)
T 1fhg_A 42 PYFTKTILDMEVVEGSAARFDCKVEGYPDPEVMWFKDDNPVKESRH-------FQIDYD--EEGNCSLTISEVCGDDDAK 112 (154)
T ss_dssp EEEEECCCCEEEETTSCEEEEEEEEEESCCEEEEEETTEECCCSSS-------EEEEEC--TTCEEEEEESSCCGGGCEE
T ss_pred CeEEccCCcEEEeCCCeEEEEEEEEEecCCEEEEEECCEECCCCCc-------EEEEEC--CCCeEEEEECCCChhcCEE
Confidence 3333344457788999999999999999999999999877653221 111100 1124689999999999999
Q ss_pred eeEeeccCCCCcccceEEEEEee
Q psy12044 335 FVCVAENQAGSTSSNYTIRIVLK 357 (767)
Q Consensus 335 Y~CvA~N~~G~s~~s~sL~V~~~ 357 (767)
|.|.+.|..|.....+.+.|...
T Consensus 113 Y~C~a~N~~G~~~~~~~l~V~~~ 135 (154)
T 1fhg_A 113 YTCKAVNSLGEATCTAELLVETM 135 (154)
T ss_dssp EEEEEEETTEEEEEEEEEEEECC
T ss_pred EEEEEEECCCeEEEEEEEEEeCc
Confidence 99999999998877777766543
No 187
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=97.99 E-value=1.6e-05 Score=87.51 Aligned_cols=136 Identities=18% Similarity=0.323 Sum_probs=75.2
Q ss_pred CCCCchhhhccCCCCccEEEccCCCCCccCcccccCCCCCCEEEccCCCCCCCCCCCCCCCCCCcEEECCCCcCcccccC
Q psy12044 62 KTLHNEKFQKMGLVNLQKIYLSRCRISVIDSKAFRGLTNLVDLDFSHNVLQTVPSDTFPDYPSLMKLTLSGNPIKQIKTG 141 (767)
Q Consensus 62 ~~l~~~~f~~~~L~~L~~L~Ls~N~L~~i~p~~f~~L~~L~~L~Ls~N~Lt~l~p~~f~~l~~L~~L~Ls~N~l~~l~~~ 141 (767)
..+....|. ++.+|+.+.|.++ +..+...+|.++.+|+.+.+. +.++.+...+|.++.+|+.+.|..+ ++.+...
T Consensus 254 ~~i~~~aF~--~c~~L~~i~lp~~-~~~I~~~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~ 328 (394)
T 4gt6_A 254 ARIETHAFD--SCAYLASVKMPDS-VVSIGTGAFMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-ITQILDD 328 (394)
T ss_dssp EEECTTTTT--TCSSCCEEECCTT-CCEECTTTTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCEECTT
T ss_pred eEcccceee--ecccccEEecccc-cceecCcccccccccccccCC-CcccccCceeecCCCCcCEEEeCCc-ccEehHh
Confidence 334444554 3566666666543 334555666666677776664 4566666666766777777776643 6666666
Q ss_pred CcCCCCCccEEeccCCCccccchhhhcCCCCCCeeeccCCccccccCCCCCCCCcccccCCCCC
Q psy12044 142 AFQPLSYLVTLELSKCGIEVIEDAAFVGLDSLEWLKLDNNKITTISGSNILPTGLHGIDLHHNP 205 (767)
Q Consensus 142 ~~~~l~~L~~L~Ls~N~L~~i~~~~~~~l~~L~~L~Ls~N~Lt~ip~~~~~~~~L~~L~Ls~N~ 205 (767)
+|.++.+|+.+.|..+ ++.+...+|.++.+|+.+++.+|.... ..++....|+.|.+..|.
T Consensus 329 aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~~~~--~~~~~~~~L~~i~i~~~~ 389 (394)
T 4gt6_A 329 AFAGCEQLERIAIPSS-VTKIPESAFSNCTALNNIEYSGSRSQW--NAISTDSGLQNLPVAPGS 389 (394)
T ss_dssp TTTTCTTCCEEEECTT-CCBCCGGGGTTCTTCCEEEESSCHHHH--HTCBCCCCC---------
T ss_pred HhhCCCCCCEEEECcc-cCEEhHhHhhCCCCCCEEEECCceeeh--hhhhccCCCCEEEeCCCC
Confidence 6776777777766533 666666667777777777766654321 122334455555555443
No 188
>3s35_X Vascular endothelial growth factor receptor 2; antibody, KDR, VEGF receptor, cancer, immune system-transfer complex; HET: NAG; 2.20A {Homo sapiens} PDB: 3s36_X 3s37_X
Probab=97.99 E-value=5.5e-06 Score=74.78 Aligned_cols=92 Identities=16% Similarity=0.267 Sum_probs=62.8
Q ss_pred eeeccccccccccccccc--CCCcEEEeecCeeccCCCcccccccceeecccCcceeeeEEEEeeeccCCCCceeEeecc
Q psy12044 264 LEIQEGKNVSLLCKVSAI--PEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCVAEN 341 (767)
Q Consensus 264 ~~v~~G~~vsL~C~a~g~--P~p~itW~~~g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~GtY~CvA~N 341 (767)
+.+.+|+.+.|.|.+.+. +.+.+.|.+++..+......... . ............+.|.|.++..+|.|.|+|.|.|
T Consensus 18 v~v~~G~~v~L~C~~~g~p~~~~~i~W~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~n 95 (122)
T 3s35_X 18 IELSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRD-L-KTQSGSEMKKFLSTLTIDGVTRSDQGLYTCAASS 95 (122)
T ss_dssp EEEEETCCEEEEEEEEECTTCCCEEEEECSCTTCCHHHHBCCS-C-CEEEETTEEEEEEEEEESSCCGGGCEEEEEEEEC
T ss_pred EEEecCCeEEEEEEEEcCCCCcEEEEEECCCcccCCceeeeec-c-ccccCCceeeEEEEEEECCCCcccCEEEEEEEcc
Confidence 467889999999999984 45688999977643211000000 0 0111111123456899999999999999999999
Q ss_pred CCCCcccceEEEEEee
Q psy12044 342 QAGSTSSNYTIRIVLK 357 (767)
Q Consensus 342 ~~G~s~~s~sL~V~~~ 357 (767)
..|.....+.+.|..+
T Consensus 96 ~~g~~~~~~~l~V~~~ 111 (122)
T 3s35_X 96 GLMTKKNSTFVRVHEK 111 (122)
T ss_dssp SSCEEEEEEEEEEEEE
T ss_pred CCCceEEEEEEEEecc
Confidence 9998887777766543
No 189
>2cr3_A Basic fibroblast growth factor receptor 1; IG fold, FGFR1, BFGF-R, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.95 E-value=5.8e-06 Score=72.03 Aligned_cols=80 Identities=21% Similarity=0.446 Sum_probs=60.0
Q ss_pred ccceeecccccccccccccccCCCcEEEeecCeeccCCCcccccccceeecccCcceeeeEEEEeeeccCCCCceeEeec
Q psy12044 261 TFYLEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCVAE 340 (767)
Q Consensus 261 ~~~~~v~~G~~vsL~C~a~g~P~p~itW~~~g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~GtY~CvA~ 340 (767)
+....+..|..+.|.|.+.+.| |.+.|.+++..+..... +.. ....|.|.++...|.|.|.|.+.
T Consensus 10 p~~~~v~~G~~v~L~C~~~g~p-p~i~W~k~g~~~~~~~~-------~~~-------~~~~L~i~~v~~~D~G~Y~C~a~ 74 (99)
T 2cr3_A 10 VESFLVHPGDLLQLRCRLRDDV-QSINWLRDGVQLAESNR-------TRI-------TGEEVEVQDSVPADSGLYACVTS 74 (99)
T ss_dssp EEECCBCTTSCEEEECCCCSSC-CEEEEEESSSBCCCCSS-------EEE-------CSSEEEETTCCTTTCEEEEEEEE
T ss_pred CcCeEEeCCCcEEEEEEecCCC-CeEEEEECCEECCCCCc-------EEE-------ECCEEEEccCCHHHCEEEEEEEE
Confidence 3456678899999999999987 79999998866533211 111 13579999999999999999999
Q ss_pred cCCCCcccceEEEEE
Q psy12044 341 NQAGSTSSNYTIRIV 355 (767)
Q Consensus 341 N~~G~s~~s~sL~V~ 355 (767)
|..|.....+.+.|.
T Consensus 75 n~~g~~~~~~~l~V~ 89 (99)
T 2cr3_A 75 SPSGSDTTYFSVNVS 89 (99)
T ss_dssp ETTEEEEEEEEECBC
T ss_pred eCCceEEEEEEEEEe
Confidence 999886555544443
No 190
>4hwu_A Fibroblast growth factor receptor 2; FGFR2, KGFR, CD332, IG-C2 type 1 domain, IG superfamily, IMM system, structural genomics, PSI-biology; 2.90A {Mus musculus}
Probab=97.91 E-value=1.3e-05 Score=68.99 Aligned_cols=78 Identities=21% Similarity=0.363 Sum_probs=59.5
Q ss_pred cceeecccccccccccccccCCCcEEEeecCeeccCCCcccccccceeecccCcceeeeEEEEeeeccCCCCceeEeecc
Q psy12044 262 FYLEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCVAEN 341 (767)
Q Consensus 262 ~~~~v~~G~~vsL~C~a~g~P~p~itW~~~g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~GtY~CvA~N 341 (767)
....+..|+.+.|.|.+.+ .|.+.|.+++..+...... .. ..+.|.|.++..+|.|.|.|.+.|
T Consensus 9 ~~~~v~~G~~~~l~C~~~~--~p~v~W~k~g~~~~~~~~~-------~~-------~~~~L~i~~~~~~D~G~Y~C~a~n 72 (95)
T 4hwu_A 9 EAYVVAPGESLELQCMLKD--AAVISWTKDGVHLGPNNRT-------VL-------IGEYLQIKGATPRDSGLYACTAAR 72 (95)
T ss_dssp EEEEECTTSCEEEECCCCT--TCEEEEEETTEEECCCSSE-------EE-------ETTEEEECSCCGGGCEEEEEEEEC
T ss_pred CcEEECCCCEEEEEEEeCC--CCEEEEEECCEECCCCceE-------EE-------eCCEEEECcCCcccCEEEEEEEcc
Confidence 3567789999999999987 5799999988776432211 11 134799999999999999999999
Q ss_pred CCCCcccceEEEEE
Q psy12044 342 QAGSTSSNYTIRIV 355 (767)
Q Consensus 342 ~~G~s~~s~sL~V~ 355 (767)
..|.....+.+.|.
T Consensus 73 ~~g~~~~~~~l~V~ 86 (95)
T 4hwu_A 73 TVDSETWIFMVNVT 86 (95)
T ss_dssp SSCEEEEEEEEEEC
T ss_pred CCCcEEEEEEEEEe
Confidence 99876666655544
No 191
>1gl4_B Basement membrane-specific heparan sulfate proteoglycan core protein; immunoglobulin-like domain, extracellular matrix; HET: EPE; 2.0A {Mus musculus} SCOP: b.1.1.4
Probab=97.90 E-value=1e-05 Score=69.93 Aligned_cols=78 Identities=19% Similarity=0.290 Sum_probs=59.1
Q ss_pred cceeeccccccccccccc-ccCCCcEEEeecCeeccCCCcccccccceeecccCcceeeeEEEEeeeccCCCCceeEeec
Q psy12044 262 FYLEIQEGKNVSLLCKVS-AIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCVAE 340 (767)
Q Consensus 262 ~~~~v~~G~~vsL~C~a~-g~P~p~itW~~~g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~GtY~CvA~ 340 (767)
....+..|+.+.|.|.+. +.|.+.+.|.+++....... .....+.|.|.++..+|.|.|.|.+.
T Consensus 18 ~~~~v~~G~~v~l~C~~~~~~p~~~v~W~k~~~~~~~~~---------------~~~~~~~L~i~~v~~~D~G~Y~C~a~ 82 (98)
T 1gl4_B 18 RSQSVRPGADVTFICTAKSKSPAYTLVWTRLHNGKLPSR---------------AMDFNGILTIRNVQPSDAGTYVCTGS 82 (98)
T ss_dssp CEEEECTTCCEEEEEEEEESSSCCEEEEEEGGGBCCCTT---------------EEEETTEEEECSCCGGGCEEEEEEEE
T ss_pred CCeEEecCCCEEEEEeCCCCCCCcEEEEEeCCCCCCCce---------------eecCCCEEEEeCCChhhCEEEEEEec
Confidence 345788999999999998 68999999998643221110 01123479999999999999999999
Q ss_pred cCCCCcccceEEEE
Q psy12044 341 NQAGSTSSNYTIRI 354 (767)
Q Consensus 341 N~~G~s~~s~sL~V 354 (767)
|..|.....+.+.|
T Consensus 83 n~~g~~~~~~~l~V 96 (98)
T 1gl4_B 83 NMFAMDQGTATLHV 96 (98)
T ss_dssp CSSCEEEEEEEEEE
T ss_pred CCCCccccEEEEEE
Confidence 99998776665554
No 192
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.87 E-value=2.4e-06 Score=89.15 Aligned_cols=81 Identities=26% Similarity=0.260 Sum_probs=55.5
Q ss_pred cCCCCCCEEEccCCCCCCCC--CCCCCCCCCCcEEECCCCcCccccc-CCcCCCCCccEEeccCCCccccch-------h
Q psy12044 96 RGLTNLVDLDFSHNVLQTVP--SDTFPDYPSLMKLTLSGNPIKQIKT-GAFQPLSYLVTLELSKCGIEVIED-------A 165 (767)
Q Consensus 96 ~~L~~L~~L~Ls~N~Lt~l~--p~~f~~l~~L~~L~Ls~N~l~~l~~-~~~~~l~~L~~L~Ls~N~L~~i~~-------~ 165 (767)
.++++|+.|+|++|+|+++. +..+..+++|+.|+|++|.|+++.. ..+..+ +|+.|+|++|.|.+..+ .
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l~~l~~l-~L~~L~L~~Npl~~~~~~~~~y~~~ 245 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGL-KLEELWLDGNSLCDTFRDQSTYISA 245 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGGGGGGTTS-CCSEEECTTSTTGGGCSSHHHHHHH
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCchhhhhcccC-CcceEEccCCcCccccCcchhHHHH
Confidence 45778888888888888754 3445577888888888888887622 223333 78888888888775322 3
Q ss_pred hhcCCCCCCeee
Q psy12044 166 AFVGLDSLEWLK 177 (767)
Q Consensus 166 ~~~~l~~L~~L~ 177 (767)
.+..+++|+.||
T Consensus 246 il~~~P~L~~LD 257 (267)
T 3rw6_A 246 IRERFPKLLRLD 257 (267)
T ss_dssp HHHHCTTCCEES
T ss_pred HHHHCcccCeEC
Confidence 456677777766
No 193
>3rbg_A Cytotoxic and regulatory T-cell molecule; IGV, crtam, structural genomics, PSI-biology, NEW YORK struc genomics research consortium, nysgrc; 2.30A {Homo sapiens}
Probab=97.87 E-value=1.2e-05 Score=73.13 Aligned_cols=94 Identities=13% Similarity=0.264 Sum_probs=63.2
Q ss_pred CccceeecccccccccccccccCCCcEEEeecCeeccC-CCcccccccceeecccCcceeeeEEEEeeeccCCCCceeEe
Q psy12044 260 STFYLEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQN-ESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCV 338 (767)
Q Consensus 260 ~~~~~~v~~G~~vsL~C~a~g~P~p~itW~~~g~~l~~-~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~GtY~Cv 338 (767)
.+..+.+.+|+.++|.|.+.+.+.+.+.|...+..+.. ..........+.... .......|.|.++..+|.|.|.|.
T Consensus 7 ~~~~~~v~~G~~v~L~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~r~~~~~--~~~~~~~L~I~~v~~~DsG~Y~C~ 84 (124)
T 3rbg_A 7 HTETITVEEGQTLTLKCVTSLRKNSSLQWLTPSGFTIFLNEYPVLKNSKYQLLH--HSANQLSITVPNVTLQDEGVYKCL 84 (124)
T ss_dssp SEEEEEEETTSCEEEEEECCCCTTCEEEEECTTSCEEEETTEECSCSSCCEEEE--EETTEEEEEESSCCGGGCEEEEEE
T ss_pred CCccEEEcCCCCEEEEeEEeccCCCEEEEECCCCeEEEEeccccccCCcEEEEe--CCCCEEEEEECCCChHHCEEEEEE
Confidence 44567788999999999999999999999975432211 000000001111111 122346899999999999999999
Q ss_pred eccCCCCcccceEEEEEe
Q psy12044 339 AENQAGSTSSNYTIRIVL 356 (767)
Q Consensus 339 A~N~~G~s~~s~sL~V~~ 356 (767)
+.|. |.....+.+.|..
T Consensus 85 a~n~-g~~~~~~~l~V~~ 101 (124)
T 3rbg_A 85 HYSD-SVSTKEVKVIVLA 101 (124)
T ss_dssp EESS-SEEEEEEEEEEEC
T ss_pred EEcC-CCCcEEEEEEEEe
Confidence 9998 7776666666654
No 194
>2lu7_A Obscurin-like protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, structural prote; NMR {Homo sapiens}
Probab=97.87 E-value=1.7e-05 Score=67.44 Aligned_cols=69 Identities=19% Similarity=0.430 Sum_probs=52.6
Q ss_pred ceeecccccccccccccccCCCcEEEeecCeeccCCCcccccccceeecccCcceeeeEEEEeeeccCCCCceeEeeccC
Q psy12044 263 YLEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCVAENQ 342 (767)
Q Consensus 263 ~~~v~~G~~vsL~C~a~g~P~p~itW~~~g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~GtY~CvA~N~ 342 (767)
.+.+..|+.+.|.|.+.+ |.|.+.|++++..+...... .....+ ....|.|.++..+|.|.|.|.|.|.
T Consensus 5 ~v~~~~G~~v~l~C~vs~-p~p~v~W~k~g~~l~~~~~~-------~~~~~~---~~~~L~I~~~~~~D~G~Y~C~a~n~ 73 (84)
T 2lu7_A 5 RVRSTPGGDLELVVHLSG-PGGPVRWYKDGERLASQGRV-------QLEQAG---ARQVLRVQGARSGDAGEYLCDAPQD 73 (84)
T ss_dssp CEEECTTSCEEEECCCSC-CSTTCEEEETTEECCCCSSE-------EEEECS---SCEEEEESSCSSTTCEEEEEECTTT
T ss_pred EEEEecCCCEEEEEEECC-CCcEEEEEECCEEccccccE-------EEeecC---CeEEEEecCCCCcccEEEEEEECCE
Confidence 467789999999999876 99999999999887543221 111111 2357999999999999999998653
No 195
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.87 E-value=1.4e-06 Score=85.82 Aligned_cols=118 Identities=12% Similarity=0.071 Sum_probs=88.9
Q ss_pred cccccCCCCCCEEEccCC-CCCCC----CCCCCCCCCCCcEEECCCCcCcccc----cCCcCCCCCccEEeccCCCcccc
Q psy12044 92 SKAFRGLTNLVDLDFSHN-VLQTV----PSDTFPDYPSLMKLTLSGNPIKQIK----TGAFQPLSYLVTLELSKCGIEVI 162 (767)
Q Consensus 92 p~~f~~L~~L~~L~Ls~N-~Lt~l----~p~~f~~l~~L~~L~Ls~N~l~~l~----~~~~~~l~~L~~L~Ls~N~L~~i 162 (767)
...+...++|++|+|++| .|... ....+...++|++|+|++|.|.... ...+...++|+.|+|++|.|...
T Consensus 29 ~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~ 108 (185)
T 1io0_A 29 KRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGS 108 (185)
T ss_dssp HHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHH
T ss_pred HHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHH
Confidence 456778899999999999 88742 2234566789999999999997532 23345568899999999999865
Q ss_pred c----hhhhcCCCCCCeeec--cCCcccc-----ccCCCCCCCCcccccCCCCCCCch
Q psy12044 163 E----DAAFVGLDSLEWLKL--DNNKITT-----ISGSNILPTGLHGIDLHHNPWTCD 209 (767)
Q Consensus 163 ~----~~~~~~l~~L~~L~L--s~N~Lt~-----ip~~~~~~~~L~~L~Ls~N~l~C~ 209 (767)
. ..++....+|+.|+| ++|.|+. +...+....+|+.|+|++|.+...
T Consensus 109 g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~~~ 166 (185)
T 1io0_A 109 GILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQGPR 166 (185)
T ss_dssp HHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHHHH
T ss_pred HHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCChH
Confidence 3 455677889999999 8899974 222222347899999999987643
No 196
>1x44_A Myosin-binding protein C, SLOW-type; IG-like domain, SLOW- type/skeletal muscle SLOW-isoform, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4
Probab=97.86 E-value=5e-05 Score=66.35 Aligned_cols=84 Identities=24% Similarity=0.311 Sum_probs=59.3
Q ss_pred CccceeecccccccccccccccCCCcEEEeecCeeccCCCcccccccceeecccCcceeeeEEEEeeeccCCCCceeEee
Q psy12044 260 STFYLEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCVA 339 (767)
Q Consensus 260 ~~~~~~v~~G~~vsL~C~a~g~P~p~itW~~~g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~GtY~CvA 339 (767)
......+.+|+.+.|.|.+.+ +.+.+.|++++..+...... .+.....+ ....|.|.++..+|.|.|.|.+
T Consensus 13 ~~~~~~v~~G~~v~l~C~~~~-~~~~v~W~k~g~~l~~~~~~-----~~~~~~~~---~~~~L~I~~~~~~D~G~Y~C~a 83 (103)
T 1x44_A 13 QLEDTTAYCGERVELECEVSE-DDANVKWFKNGEEIIPGPKS-----RYRIRVEG---KKHILIIEGATKADAAEYSVMT 83 (103)
T ss_dssp CCCCEEEETTEEEEEEEECSS-SSCCCEEEETTEECCCSTTC-----SEEEEEET---TEEEEEEEEECTTTCSEEEEEE
T ss_pred cCCCEEEECCCCEEEEEEecC-CCCeEEEEECCEECCCCCce-----EEEEEEcC---CEEEEEECCCCcccCEEEEEEE
Confidence 344567889999999999987 77999999998776543211 11111111 2467999999999999999999
Q ss_pred ccCCCCcccceEEEEEe
Q psy12044 340 ENQAGSTSSNYTIRIVL 356 (767)
Q Consensus 340 ~N~~G~s~~s~sL~V~~ 356 (767)
.| ....+.+.|..
T Consensus 84 ~n----~~~~~~l~V~~ 96 (103)
T 1x44_A 84 TG----GQSSAKLSVDL 96 (103)
T ss_dssp TT----EEEEEEEEEEC
T ss_pred CC----CcEEEEEEEeC
Confidence 87 34445555544
No 197
>3qr2_A Basigin; CD147, EMMPRIN, immunoglobulin-like domain, beta sheet, STRU genomics, berkeley structural genomics center, BSGC, cell A; 2.30A {Homo sapiens} PDB: 3qqn_A
Probab=97.86 E-value=7.4e-06 Score=75.75 Aligned_cols=97 Identities=19% Similarity=0.248 Sum_probs=66.1
Q ss_pred cCCCCCCCCccceeecccccccccccccccCCCcEEEeecCeeccCCCccc-cc--ccceeecccCcceeeeEEEEeeec
Q psy12044 252 ACEPQITPSTFYLEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSA-SE--SHAVYSTEEGTEIKKSELLIYNSN 328 (767)
Q Consensus 252 ~C~P~i~~~~~~~~v~~G~~vsL~C~a~g~P~p~itW~~~g~~l~~~s~~~-~~--~~~~~~~~~g~~~~~s~L~I~nvs 328 (767)
.+.|.+...+....+..|..+.|.|.+.+.|.|.+.|.+++..+....... .. ...+...........+.|.|.++.
T Consensus 19 ~~pP~~~~~p~~~~v~~G~~v~L~C~~~g~P~p~i~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~ 98 (137)
T 3qr2_A 19 SHMAGFVQAPLSQQRWVGGSVELHCEAVGSPVPEIQWWFEGQGPNDICSQLWDGARLDRVHIHATYHQHAASTISIDTLV 98 (137)
T ss_dssp --CCEEEECCCCEEEETTSCEEEEEEEECSSCCEEEEEEEESSTTCCCEECCTTHHHHTEEEEEEESSSEEEEEEECSCC
T ss_pred CCCCeEEcCCCCEEEeCCCCEEEEEEEeeecCCeEEEEECCCCccccceeecccCcccceEEecccccccceEEEECCCC
Confidence 345666666677788899999999999999999999999765443211000 00 001111111112245789999999
Q ss_pred cCCCCceeEeeccCCCCccc
Q psy12044 329 IDDNGTFVCVAENQAGSTSS 348 (767)
Q Consensus 329 ~sD~GtY~CvA~N~~G~s~~ 348 (767)
.+|.|.|.|.|.|..|....
T Consensus 99 ~~D~G~Y~C~a~N~~G~~~~ 118 (137)
T 3qr2_A 99 EEDTGTYECRASNDPDRNHL 118 (137)
T ss_dssp GGGCEEEEEEEECCTTSSSC
T ss_pred cccCEEEEEEEEecCCccce
Confidence 99999999999999998754
No 198
>2v9t_A Roundabout homolog 1; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens}
Probab=97.84 E-value=9.8e-06 Score=72.57 Aligned_cols=91 Identities=25% Similarity=0.432 Sum_probs=59.3
Q ss_pred CCCCCCccceeecccccccccccccccCCCcEEEeecCeeccCCCcccccccceeecccCcceeeeEEEEeeeccCCCCc
Q psy12044 255 PQITPSTFYLEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGT 334 (767)
Q Consensus 255 P~i~~~~~~~~v~~G~~vsL~C~a~g~P~p~itW~~~g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~Gt 334 (767)
|.+...+....+..|+.+.|.|.+.+.|.|.+.|++++..+....... ... .....++. .....+.+.++...|.|.
T Consensus 10 P~i~~~p~~~~v~~G~~v~L~C~~~g~P~p~v~W~k~~~~~~~~~~~~-~~~-~~~~~~~~-~~~~~i~~~~v~~~D~G~ 86 (117)
T 2v9t_A 10 PRIVEHPSDLIVSKGEPATLNCKAEGRPTPTIEWYKGGERVETDKDDP-RSH-RMLLPSGS-LFFLRIVHGRKSRPDEGV 86 (117)
T ss_dssp EEEEECCCCEEECTTCCEEECCEEEEESCCEEEEEETTEECCCTTTCS-SCS-EEECTTSC-EEESSCCCBTTBCSSCEE
T ss_pred CeeEcCCCCEEEcCCCcEEEEEECCccCCCeEEEEECCEeccccCCCC-cce-eEEecCCc-EEEEEEEeCCCCcCcCEE
Confidence 333334445678899999999999999999999999987765432110 000 11111111 111123333567899999
Q ss_pred eeEeeccCCCCccc
Q psy12044 335 FVCVAENQAGSTSS 348 (767)
Q Consensus 335 Y~CvA~N~~G~s~~ 348 (767)
|.|.|.|..|...+
T Consensus 87 Y~C~a~N~~G~~~s 100 (117)
T 2v9t_A 87 YVCVARNYLGEAVS 100 (117)
T ss_dssp EEEEEEETTEEEEC
T ss_pred EEEEEEeCccceEe
Confidence 99999999998765
No 199
>1wwc_A Protein (NT-3 growth factor receptor TRKC); TRK receptor, receptor tyrosine kinase, 3D-domain swapping, transferase; 1.90A {Homo sapiens} SCOP: b.1.1.4
Probab=97.83 E-value=1.3e-05 Score=72.15 Aligned_cols=81 Identities=21% Similarity=0.364 Sum_probs=59.4
Q ss_pred ccccccccccccCCCcEEEeecCeeccCCCcccccccceeecccCcceeeeEEEEeeeccCCCCceeEeeccCCCCcccc
Q psy12044 270 KNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCVAENQAGSTSSN 349 (767)
Q Consensus 270 ~~vsL~C~a~g~P~p~itW~~~g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~GtY~CvA~N~~G~s~~s 349 (767)
....+.|.+.+.|.|.+.|.+++..+...... ....... .....+.|.|.++...|.|.|.|.|.|..|...+.
T Consensus 21 ~~~~l~C~~~g~P~p~i~W~k~g~~l~~~~~~-----~~~~~~~-~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~G~~~~~ 94 (118)
T 1wwc_A 21 LEHCIEFVVRGNPPPTLHWLHNGQPLRESKII-----HVEYYQE-GEISEGCLLFNKPTHYNNGNYTLIAKNPLGTANQT 94 (118)
T ss_dssp CEEEEEEEEECSSCCEEEEEETTEECCCSSSE-----EEEEEEC-SSEEEEEEEEESCCGGGCEEEEEEEEETTEEEEEE
T ss_pred cceEEEEEeeeeCCCeEEEEECCEECCCCCce-----eEEEecc-CccccEEEEECCCChhcCEEEEEEEECCCCeEeeE
Confidence 34567899999999999999998877543321 1111111 11345689999999999999999999999988777
Q ss_pred eEEEEEe
Q psy12044 350 YTIRIVL 356 (767)
Q Consensus 350 ~sL~V~~ 356 (767)
+.+.|..
T Consensus 95 ~~l~v~~ 101 (118)
T 1wwc_A 95 INGHFLK 101 (118)
T ss_dssp EEECCSC
T ss_pred EEEEEcc
Confidence 7665544
No 200
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=97.81 E-value=5.2e-05 Score=83.28 Aligned_cols=146 Identities=21% Similarity=0.309 Sum_probs=103.7
Q ss_pred CCccEEEeeCCCCCCCCchhhhccCCCCccEEEccCCCCCccCcccccCCCCCCEEEccCCCCCCCCCCCCCCCCCCcEE
Q psy12044 49 PNTQVLDYTGNNLKTLHNEKFQKMGLVNLQKIYLSRCRISVIDSKAFRGLTNLVDLDFSHNVLQTVPSDTFPDYPSLMKL 128 (767)
Q Consensus 49 ~~L~~L~Ls~N~L~~l~~~~f~~~~L~~L~~L~Ls~N~L~~i~p~~f~~L~~L~~L~Ls~N~Lt~l~p~~f~~l~~L~~L 128 (767)
.+|+.+.+.. .++.+....|. ++.+|+.+.+..+ +..+...+|..+..|+.+.+..+. +....|..+.+|+.+
T Consensus 230 ~~l~~i~ip~-~~~~i~~~~f~--~~~~l~~~~~~~~-~~~i~~~~F~~~~~l~~~~~~~~~---i~~~~F~~~~~L~~i 302 (394)
T 4fs7_A 230 TGVKNIIIPD-SFTELGKSVFY--GCTDLESISIQNN-KLRIGGSLFYNCSGLKKVIYGSVI---VPEKTFYGCSSLTEV 302 (394)
T ss_dssp CCCCEEEECT-TCCEECSSTTT--TCSSCCEEEECCT-TCEECSCTTTTCTTCCEEEECSSE---ECTTTTTTCTTCCEE
T ss_pred CCCceEEECC-Cceeccccccc--ccccceeEEcCCC-cceeeccccccccccceeccCcee---ecccccccccccccc
Confidence 4567777753 45566666666 3788888888765 344556778888888888776654 334567778888888
Q ss_pred ECCCCcCcccccCCcCCCCCccEEeccCCCccccchhhhcCCCCCCeeeccCCccccccCCCCC-CCCcccccCCCC
Q psy12044 129 TLSGNPIKQIKTGAFQPLSYLVTLELSKCGIEVIEDAAFVGLDSLEWLKLDNNKITTISGSNIL-PTGLHGIDLHHN 204 (767)
Q Consensus 129 ~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~L~~i~~~~~~~l~~L~~L~Ls~N~Lt~ip~~~~~-~~~L~~L~Ls~N 204 (767)
.+..+ ++.+...+|.++.+|+.++|.. .++.+...+|.++.+|+.++|..| ++.|....|. ..+|+.++|..+
T Consensus 303 ~l~~~-i~~I~~~aF~~c~~L~~i~lp~-~v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~~ 376 (394)
T 4fs7_A 303 KLLDS-VKFIGEEAFESCTSLVSIDLPY-LVEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELPKR 376 (394)
T ss_dssp EECTT-CCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEEGG
T ss_pred ccccc-cceechhhhcCCCCCCEEEeCC-cccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEECCC
Confidence 88654 7777777888888888888864 377777778888888888888765 7777766654 467777777543
No 201
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=97.80 E-value=9.8e-05 Score=80.40 Aligned_cols=135 Identities=22% Similarity=0.331 Sum_probs=77.7
Q ss_pred CccEEEeeCCCCCCCCchhhhccCCCCccEEEccCCCCCccCcccccCCCCCCEEEccCCCCCCCCCCCCCCCCCCcEEE
Q psy12044 50 NTQVLDYTGNNLKTLHNEKFQKMGLVNLQKIYLSRCRISVIDSKAFRGLTNLVDLDFSHNVLQTVPSDTFPDYPSLMKLT 129 (767)
Q Consensus 50 ~L~~L~Ls~N~L~~l~~~~f~~~~L~~L~~L~Ls~N~L~~i~p~~f~~L~~L~~L~Ls~N~Lt~l~p~~f~~l~~L~~L~ 129 (767)
+++.+.+.. .+..+....|. ++.+|+.+.+..+ ++.+...+|.++.+|+.+.+.. .++.+....|.++.+|+.+.
T Consensus 218 ~l~~i~~~~-~~~~i~~~~f~--~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~-~i~~i~~~aF~~c~~L~~i~ 292 (379)
T 4h09_A 218 NLKKITITS-GVTTLGDGAFY--GMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYA-KVKTVPYLLCSGCSNLTKVV 292 (379)
T ss_dssp SCSEEECCT-TCCEECTTTTT--TCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECC-CCSEECTTTTTTCTTCCEEE
T ss_pred ccceeeecc-ceeEEcccccc--CCccceEEEcCCC-ccEeCccccceeehhccccccc-cceecccccccccccccccc
Confidence 344444432 24444444444 2556666666543 5555556666666666666643 35555556666666666666
Q ss_pred CCCCcCcccccCCcCCCCCccEEeccCCCccccchhhhcCCCCCCeeeccCCccccccCCCC
Q psy12044 130 LSGNPIKQIKTGAFQPLSYLVTLELSKCGIEVIEDAAFVGLDSLEWLKLDNNKITTISGSNI 191 (767)
Q Consensus 130 Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~L~~i~~~~~~~l~~L~~L~Ls~N~Lt~ip~~~~ 191 (767)
+.++.++.+...+|.++.+|+.+.|..+ ++.+...+|.++.+|+.+.|..+ ++.|....|
T Consensus 293 l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~~-v~~I~~~aF 352 (379)
T 4h09_A 293 MDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYPKS-ITLIESGAF 352 (379)
T ss_dssp ECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTT
T ss_pred ccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEECCc-cCEEchhHh
Confidence 6666666666666666666666666533 55666666666666666666433 555544443
No 202
>2e6p_A Obscurin-like protein 1; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.80 E-value=4.1e-05 Score=66.90 Aligned_cols=78 Identities=21% Similarity=0.436 Sum_probs=57.6
Q ss_pred eeecccccccccccccccCCCcEEEeecCeeccCCCcccccccceeecccCcceeeeEEEEeeeccCCCCceeEeeccCC
Q psy12044 264 LEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCVAENQA 343 (767)
Q Consensus 264 ~~v~~G~~vsL~C~a~g~P~p~itW~~~g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~GtY~CvA~N~~ 343 (767)
..+..|+.+.|.|.+.+.+.+ +.|++++..+...... ..... .....|.|.++..+|.|.|.|.+.|..
T Consensus 20 ~~v~~G~~v~l~C~~~~~p~~-v~W~k~g~~~~~~~~~-------~~~~~---~~~~~L~I~~~~~~D~G~Y~C~a~n~~ 88 (104)
T 2e6p_A 20 LTFTTSERVVLTCELSRVDFP-ATWYKDGQKVEESELL-------VVKMD---GRKHRLILPEAKVQDSGEFECRTEGVS 88 (104)
T ss_dssp EEEESSSCEECCEECSSTTCC-CEEEETTEECCCBTTB-------EEEEE---TTEEEEEESSCCTTTCEEEEEECSSCC
T ss_pred EEEeCCCcEEEEEEecCCCCc-cEEeeCCEECCCCCCE-------EEEeC---CCEEEEEECCCChhhCEEEEEEECCce
Confidence 677899999999999999999 9999998776532211 11111 124579999999999999999999874
Q ss_pred CCcccceEEEEEe
Q psy12044 344 GSTSSNYTIRIVL 356 (767)
Q Consensus 344 G~s~~s~sL~V~~ 356 (767)
+ .+.+.|..
T Consensus 89 ~----~~~l~V~~ 97 (104)
T 2e6p_A 89 A----FFGVTVQD 97 (104)
T ss_dssp C----CEEEEEEC
T ss_pred E----EEEEEEcC
Confidence 3 45555544
No 203
>2cry_A KIN of IRRE-like protein 3; IG fold, KIN of irregular chiasm-like protein 3, nephrin- like 2, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.1
Probab=97.77 E-value=4.8e-06 Score=75.38 Aligned_cols=90 Identities=19% Similarity=0.198 Sum_probs=64.3
Q ss_pred ccceeecccccccccccccccCCCc-EEEeecCeeccCCCcccccccceeec-ccCcceeeeEEEEeeeccCCC-CceeE
Q psy12044 261 TFYLEIQEGKNVSLLCKVSAIPEAK-ITWLFDGVPIQNESMSASESHAVYST-EEGTEIKKSELLIYNSNIDDN-GTFVC 337 (767)
Q Consensus 261 ~~~~~v~~G~~vsL~C~a~g~P~p~-itW~~~g~~l~~~s~~~~~~~~~~~~-~~g~~~~~s~L~I~nvs~sD~-GtY~C 337 (767)
.....+.+|+.+.|.|.+.+.|.|. +.|.+++..+..... ..+... ........+.|.|.++..+|. |.|.|
T Consensus 20 ~~~~~~~~G~~v~l~C~~~g~P~p~~i~W~~~~~~l~~~~~-----~~~~~~~~~~~~~~~~~L~I~~v~~~D~~G~Y~C 94 (122)
T 2cry_A 20 TQTQHALHGEKGQIKCFIRSTPPPDRIAWSWKENVLESGTS-----GRYTVETISTEEGVISTLTISNIVRADFQTIYNC 94 (122)
T ss_dssp ECCCCCCTTSCCCCCEEECCSSCCSEEEEESSSCEECSEEE-----TTEEEEEEEETTEEEEEEECTTCCHHHHHSCEEE
T ss_pred CCeEEEecCCCEEEEEEEeecCCCcEeEEEECCEEccCCCC-----CCEEEEEecCCCceEEEEEEcCCChhhCCceEEE
Confidence 3456678899999999999999997 999998876643110 111111 000112256899999999998 99999
Q ss_pred eeccCCCCcccceEEEEE
Q psy12044 338 VAENQAGSTSSNYTIRIV 355 (767)
Q Consensus 338 vA~N~~G~s~~s~sL~V~ 355 (767)
.|.|..|.....+.+.|.
T Consensus 95 ~a~N~~G~~~~~~~l~V~ 112 (122)
T 2cry_A 95 TAWNSFGSDTEIIRLKEQ 112 (122)
T ss_dssp EEECSSCEEEEEECCCCS
T ss_pred EEECCCCeEEEEEEEEEC
Confidence 999999988766555443
No 204
>2dlt_A Myosin binding protein C, fast-type; IG-like domain, mybpc2, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=97.76 E-value=4.1e-05 Score=67.28 Aligned_cols=86 Identities=15% Similarity=0.255 Sum_probs=60.3
Q ss_pred CCCCccceeecccccccccccccccCCCcEEEeecCeeccCCCcccccccceeecccCcceeeeEEEEeeeccCCCCcee
Q psy12044 257 ITPSTFYLEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFV 336 (767)
Q Consensus 257 i~~~~~~~~v~~G~~vsL~C~a~g~P~p~itW~~~g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~GtY~ 336 (767)
+........+..|+.+.|.|.+.+.+.+ +.|++++..+...... ..... .....|.|.++..+|.|.|.
T Consensus 11 ~~~~~~~~~v~~G~~v~l~C~~~~~~~~-v~W~k~g~~~~~~~~~-------~~~~~---~~~~~L~I~~v~~~D~G~Y~ 79 (106)
T 2dlt_A 11 VLQDIADLTVKAAEQAVFKCEVSDEKVT-GKWYKNGVEVRPSKRI-------TISHV---GRFHKLVIDDVRPEDEGDYT 79 (106)
T ss_dssp EEECCCCEEEESSCCEECCCEESCSSCE-EEEEESSCBCCCCSSC-------EEEEE---TTEEEEEESSCCTTTCSCEE
T ss_pred EecCCCCeEEeCCCeEEEEEEEcCCCcc-eEEEcCCEECcCCCCE-------EEEEe---CCEEEEEECCCCcCCCEEEE
Confidence 3334456788899999999999998888 9999988766432211 11111 12357999999999999999
Q ss_pred EeeccCCCCcccceEEEEE
Q psy12044 337 CVAENQAGSTSSNYTIRIV 355 (767)
Q Consensus 337 CvA~N~~G~s~~s~sL~V~ 355 (767)
|.+.|. .....+.+.|.
T Consensus 80 C~a~n~--~~~~~~~l~V~ 96 (106)
T 2dlt_A 80 FVPDGY--ALSLSAKLNFL 96 (106)
T ss_dssp EEEETS--CCCCCBCEEEE
T ss_pred EEEccC--CceEEEEEEEE
Confidence 999998 33334444443
No 205
>2edf_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.75 E-value=4.1e-05 Score=66.75 Aligned_cols=82 Identities=22% Similarity=0.381 Sum_probs=58.5
Q ss_pred CccceeecccccccccccccccCCCcEEEeecCeeccCCCcccccccceeecccCcceeeeEEEEeeeccCCCCceeEee
Q psy12044 260 STFYLEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCVA 339 (767)
Q Consensus 260 ~~~~~~v~~G~~vsL~C~a~g~P~p~itW~~~g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~GtY~CvA 339 (767)
......+..|+.+.|.|.+.+ +.+.+.|++++..+..... +.....+ ....|.|.++...|.|.|.|.+
T Consensus 14 ~~~~~~v~~G~~v~l~C~~~~-~~~~v~W~k~g~~~~~~~~-------~~~~~~~---~~~~L~I~~v~~~D~G~Y~C~a 82 (103)
T 2edf_A 14 PLEDQWVAPGEDVELRCELSR-AGTPVHWLKDRKAIRKSQK-------YDVVCEG---TMAMLVIRGASLKDAGEYTCEV 82 (103)
T ss_dssp CCCCEEECTTSCEEECCEESS-SSCCCCEEESSCBCCCSSS-------EEEEEET---TEEEEEESSCCTTTCSEEEEEC
T ss_pred cCCccEEcCCCCEEEEEEEeC-CCCcEEEEECCEEccCCCC-------EEEEECC---CEEEEEECCCCcccCEEEEEEE
Confidence 344567889999999999997 8889999998876643221 1111111 1457999999999999999999
Q ss_pred ccCCCCcccceEEEEEe
Q psy12044 340 ENQAGSTSSNYTIRIVL 356 (767)
Q Consensus 340 ~N~~G~s~~s~sL~V~~ 356 (767)
.| ....+.+.|..
T Consensus 83 ~n----~~~~~~l~V~~ 95 (103)
T 2edf_A 83 EA----SKSTASLHVEE 95 (103)
T ss_dssp SS----CEEEEEEEECC
T ss_pred cc----CCcEEEEEEeC
Confidence 98 23445555543
No 206
>3rbs_A Myomesin-1; immunoglobulin C-SET domain, contractIle protein; 1.85A {Homo sapiens}
Probab=97.73 E-value=2.2e-05 Score=78.31 Aligned_cols=77 Identities=26% Similarity=0.375 Sum_probs=61.7
Q ss_pred eeeccccccccccccccc-CCCcEEEeecCeeccCCCcccccccceeecccCcceeeeEEEEeeeccCCCCceeEeeccC
Q psy12044 264 LEIQEGKNVSLLCKVSAI-PEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCVAENQ 342 (767)
Q Consensus 264 ~~v~~G~~vsL~C~a~g~-P~p~itW~~~g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~GtY~CvA~N~ 342 (767)
..+.+|..+.|.|.+.+. |.|.+.|++++..+...... ........|.|.++..+|.|.|+|.|.|.
T Consensus 126 ~~v~~g~~v~l~C~v~g~~P~p~i~W~k~g~~l~~~~~~------------~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~ 193 (207)
T 3rbs_A 126 WEVTGECNVLLKCKVANIKKETHIVWYKDEREISVDEKH------------DFKDGICTLLITEFSKKDAGIYEVILKDD 193 (207)
T ss_dssp EEEETTTEEEEEEEEESCCTTCEEEEEETTEEECCCCCC------------CCSSEEEEEEETTCCGGGCEEEEEEEEET
T ss_pred cEEcCCCcEEEEEEEeCCCCCCEEEEEECCEECCCCCce------------EcCCCEEEEEECCCCcccCEEEEEEEEcC
Confidence 567789999999999999 99999999999877543211 01123457999999999999999999999
Q ss_pred CCCcccceEE
Q psy12044 343 AGSTSSNYTI 352 (767)
Q Consensus 343 ~G~s~~s~sL 352 (767)
.|...+.+.|
T Consensus 194 ~G~~~~~~~L 203 (207)
T 3rbs_A 194 RGKDKSRLKL 203 (207)
T ss_dssp TEEEEEEEEE
T ss_pred CCEEEEEEEE
Confidence 9988776655
No 207
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.70 E-value=1.3e-05 Score=83.50 Aligned_cols=79 Identities=24% Similarity=0.282 Sum_probs=63.4
Q ss_pred CCCCccEEEccCCCCCccC--cccccCCCCCCEEEccCCCCCCCCCCCCCCCC--CCcEEECCCCcCccccc-------C
Q psy12044 73 GLVNLQKIYLSRCRISVID--SKAFRGLTNLVDLDFSHNVLQTVPSDTFPDYP--SLMKLTLSGNPIKQIKT-------G 141 (767)
Q Consensus 73 ~L~~L~~L~Ls~N~L~~i~--p~~f~~L~~L~~L~Ls~N~Lt~l~p~~f~~l~--~L~~L~Ls~N~l~~l~~-------~ 141 (767)
.+++|+.|+|++|+|+++. +..+..+++|+.|+|++|.|+++. .+..+. +|+.|+|++|.+.+..+ .
T Consensus 168 ~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~--~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~ 245 (267)
T 3rw6_A 168 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSER--ELDKIKGLKLEELWLDGNSLCDTFRDQSTYISA 245 (267)
T ss_dssp HCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGG--GGGGGTTSCCSEEECTTSTTGGGCSSHHHHHHH
T ss_pred hCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCch--hhhhcccCCcceEEccCCcCccccCcchhHHHH
Confidence 3789999999999999964 466778999999999999999872 233444 99999999999986433 2
Q ss_pred CcCCCCCccEEe
Q psy12044 142 AFQPLSYLVTLE 153 (767)
Q Consensus 142 ~~~~l~~L~~L~ 153 (767)
.+..+++|+.||
T Consensus 246 il~~~P~L~~LD 257 (267)
T 3rw6_A 246 IRERFPKLLRLD 257 (267)
T ss_dssp HHHHCTTCCEES
T ss_pred HHHHCcccCeEC
Confidence 356678888886
No 208
>1waa_A Titin; metal binding protein, calmodulin-binding, cytoskeleton, immunoglobulin domain, muscle protein, phosphorylation, repeat; 1.80A {Homo sapiens} PDB: 1waa_E 1waa_F 1tit_A 1tiu_A 2rq8_A
Probab=97.69 E-value=3.4e-05 Score=66.72 Aligned_cols=72 Identities=22% Similarity=0.384 Sum_probs=53.7
Q ss_pred CccceeecccccccccccccccCCCcEEEeecCeeccCCCcccccccceeecccCcceeeeEEEEeeeccCCCCceeEee
Q psy12044 260 STFYLEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCVA 339 (767)
Q Consensus 260 ~~~~~~v~~G~~vsL~C~a~g~P~p~itW~~~g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~GtY~CvA 339 (767)
......+.+|+.+.|.|.+.+ +.+.+.|++++..+..... +.....+ ....|.|.++..+|.|.|.|.|
T Consensus 11 ~~~~~~v~~G~~v~l~C~v~~-~~~~v~W~k~g~~i~~~~~-------~~i~~~g---~~~~L~I~~v~~~D~G~Y~C~a 79 (93)
T 1waa_A 11 PLYGVEVFVGETAHFEIELSE-PDVHGQWKLKGQPLAASPD-------CEIIEDG---KKHILILHNCQLGMTGEVSFQA 79 (93)
T ss_dssp CCCCEEEETTSCEEEEEEESS-SSCCCEEEETTEECCCBTT-------EEEEEET---TEEEEEECSCCGGGCEEEEEEE
T ss_pred cCcceEEeCCCCEEEEEEECC-CCCeEEEEECCEECcCCCC-------EEEEEEC---CEEEEEECCCChhhCEEEEEEE
Confidence 344567889999999999976 4588999999987754321 1111111 2357999999999999999999
Q ss_pred ccC
Q psy12044 340 ENQ 342 (767)
Q Consensus 340 ~N~ 342 (767)
.|.
T Consensus 80 ~n~ 82 (93)
T 1waa_A 80 ANT 82 (93)
T ss_dssp TTE
T ss_pred CCC
Confidence 884
No 209
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=97.69 E-value=0.00014 Score=79.75 Aligned_cols=124 Identities=19% Similarity=0.260 Sum_probs=93.5
Q ss_pred CCCccEEEccCCCCCccCcccccCCCCCCEEEccCCCCCCCCCCCCCCCCCCcEEECCCCcCcccccCCcCCCCCccEEe
Q psy12044 74 LVNLQKIYLSRCRISVIDSKAFRGLTNLVDLDFSHNVLQTVPSDTFPDYPSLMKLTLSGNPIKQIKTGAFQPLSYLVTLE 153 (767)
Q Consensus 74 L~~L~~L~Ls~N~L~~i~p~~f~~L~~L~~L~Ls~N~Lt~l~p~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~ 153 (767)
..+|+.+.+.. .++.+...+|.++.+|+.+.+..+ +..+....|..+..|+.+.+..+. +....|..+.+|+.+.
T Consensus 229 ~~~l~~i~ip~-~~~~i~~~~f~~~~~l~~~~~~~~-~~~i~~~~F~~~~~l~~~~~~~~~---i~~~~F~~~~~L~~i~ 303 (394)
T 4fs7_A 229 KTGVKNIIIPD-SFTELGKSVFYGCTDLESISIQNN-KLRIGGSLFYNCSGLKKVIYGSVI---VPEKTFYGCSSLTEVK 303 (394)
T ss_dssp TCCCCEEEECT-TCCEECSSTTTTCSSCCEEEECCT-TCEECSCTTTTCTTCCEEEECSSE---ECTTTTTTCTTCCEEE
T ss_pred cCCCceEEECC-CceecccccccccccceeEEcCCC-cceeeccccccccccceeccCcee---eccccccccccccccc
Confidence 46788888764 456666777888888998888765 445666778888888888877654 4456788888888888
Q ss_pred ccCCCccccchhhhcCCCCCCeeeccCCccccccCCCCC-CCCcccccCCCC
Q psy12044 154 LSKCGIEVIEDAAFVGLDSLEWLKLDNNKITTISGSNIL-PTGLHGIDLHHN 204 (767)
Q Consensus 154 Ls~N~L~~i~~~~~~~l~~L~~L~Ls~N~Lt~ip~~~~~-~~~L~~L~Ls~N 204 (767)
+..+ ++.+...+|.++.+|+.++|.. .++.|....|. ..+|+.+.|..|
T Consensus 304 l~~~-i~~I~~~aF~~c~~L~~i~lp~-~v~~I~~~aF~~c~~L~~i~lp~~ 353 (394)
T 4fs7_A 304 LLDS-VKFIGEEAFESCTSLVSIDLPY-LVEEIGKRSFRGCTSLSNINFPLS 353 (394)
T ss_dssp ECTT-CCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCTTCCEECCCTT
T ss_pred cccc-cceechhhhcCCCCCCEEEeCC-cccEEhHHhccCCCCCCEEEECcc
Confidence 8654 7778888888888999888864 48888776664 478888888765
No 210
>2dku_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.68 E-value=0.00014 Score=63.27 Aligned_cols=89 Identities=19% Similarity=0.271 Sum_probs=63.2
Q ss_pred CCCCCCccceeecccccccccccccccCCCcEEEeecCeeccCCCcccccccceeecccCcceeeeEEEEeeeccCCCCc
Q psy12044 255 PQITPSTFYLEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGT 334 (767)
Q Consensus 255 P~i~~~~~~~~v~~G~~vsL~C~a~g~P~p~itW~~~g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~Gt 334 (767)
|.+........+.+|+.+.|.|. .+.|.+.+.|.+++..+..... +.... ......|.|.++..+|.|.
T Consensus 9 p~~~~~~~~~~v~~G~~v~l~C~-~~~p~~~v~W~k~~~~l~~~~~-------~~~~~---~~~~~~L~I~~v~~~D~G~ 77 (103)
T 2dku_A 9 NCFTEELTNLQVEEKGTAVFTCK-TEHPAATVTWRKGLLELRASGK-------HQPSQ---EGLTLRLTISALEKADSDT 77 (103)
T ss_dssp CCCSSCCCCEEEETTSEEEEEEE-CSSCCSCCEEEESSCBCCSSSS-------EEEEE---ETTEEEEEEESCCTTTCSE
T ss_pred CEeEecCCcEEEeCCCcEEEEEE-eCCCCCeEEEEeCCEECCCCCe-------EEEEe---CCCEEEEEECCCCcccCEE
Confidence 44444455678899999999999 5888999999998876654321 11111 1123479999999999999
Q ss_pred eeEeeccCCCCcccceEEEEEeec
Q psy12044 335 FVCVAENQAGSTSSNYTIRIVLKE 358 (767)
Q Consensus 335 Y~CvA~N~~G~s~~s~sL~V~~~~ 358 (767)
|.|. .|.....+.+.|...+
T Consensus 78 Y~C~----~g~~~~~~~l~V~~~p 97 (103)
T 2dku_A 78 YTCD----IGQAQSRAQLLVQGRR 97 (103)
T ss_dssp EEEE----CSSCBCCEEEEEECSC
T ss_pred EEEE----eCCceEEEEEEEeCcc
Confidence 9998 5666666777766533
No 211
>2edk_A Myosin-binding protein C, fast-type; IG fold, fast MYBP-C, C-protein, skeletal muscle fast- isoform, MYBPCF, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.67 E-value=4.1e-05 Score=66.64 Aligned_cols=74 Identities=18% Similarity=0.286 Sum_probs=54.0
Q ss_pred ccceeecccccccccccccccCCCcEEEeecCeeccCCCcccccccceeecccCcceeeeEEEEeeeccCCCCceeEeec
Q psy12044 261 TFYLEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCVAE 340 (767)
Q Consensus 261 ~~~~~v~~G~~vsL~C~a~g~P~p~itW~~~g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~GtY~CvA~ 340 (767)
.....+..|+.+.|.|.+.+.+ +.+.|++++..+........ .+..... .....|.|.++..+|.|.|.|.+.
T Consensus 15 ~~~~~v~~G~~v~l~C~~~~~~-~~v~W~k~g~~i~~~~~~~~---~~~~~~~---~~~~~L~I~~~~~~D~G~Y~C~a~ 87 (101)
T 2edk_A 15 LEDQQVFVGDRVEMAVEVSEEG-AQVMWMKNGVELTREDSFKA---RYRFKKD---GKRHILIFSDVVQEDRGRYQVITN 87 (101)
T ss_dssp CCCEEEESSCCCBCCEEESCSS-CCCEEEESSCBCCCSCCSSC---CCEEEEC---SSEEEEECSSCCGGGCSBEEEECS
T ss_pred CCceEEcCCCCEEEEEEEeCCC-CEEEEEECCEECCCCCCcce---eEEEEEC---CCEEEEEECCCChhhCEEEEEEEc
Confidence 3456788999999999999998 99999998877654321100 1111111 124579999999999999999998
Q ss_pred c
Q psy12044 341 N 341 (767)
Q Consensus 341 N 341 (767)
|
T Consensus 88 n 88 (101)
T 2edk_A 88 G 88 (101)
T ss_dssp S
T ss_pred C
Confidence 7
No 212
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=97.67 E-value=8.8e-05 Score=81.45 Aligned_cols=126 Identities=19% Similarity=0.296 Sum_probs=97.1
Q ss_pred CCccEEEeeCCCCCCCCchhhhccCCCCccEEEccCCCCCccCcccccCCCCCCEEEccCCCCCCCCCCCCCCCCCCcEE
Q psy12044 49 PNTQVLDYTGNNLKTLHNEKFQKMGLVNLQKIYLSRCRISVIDSKAFRGLTNLVDLDFSHNVLQTVPSDTFPDYPSLMKL 128 (767)
Q Consensus 49 ~~L~~L~Ls~N~L~~l~~~~f~~~~L~~L~~L~Ls~N~L~~i~p~~f~~L~~L~~L~Ls~N~Lt~l~p~~f~~l~~L~~L 128 (767)
..|+.+.|.++ +..+....|.+ +.+|+.+.+. +.++.+...+|.++.+|+.++|..+ ++.+...+|.++.+|+.+
T Consensus 265 ~~L~~i~lp~~-~~~I~~~aF~~--c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i 339 (394)
T 4gt6_A 265 AYLASVKMPDS-VVSIGTGAFMN--CPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERI 339 (394)
T ss_dssp SSCCEEECCTT-CCEECTTTTTT--CTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEE
T ss_pred ccccEEecccc-cceecCccccc--ccccccccCC-CcccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEE
Confidence 46788888654 45677777874 8999999996 6788888899999999999999754 888888999999999999
Q ss_pred ECCCCcCcccccCCcCCCCCccEEeccCCCccccchhhhcCCCCCCeeeccCCcc
Q psy12044 129 TLSGNPIKQIKTGAFQPLSYLVTLELSKCGIEVIEDAAFVGLDSLEWLKLDNNKI 183 (767)
Q Consensus 129 ~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~L~~i~~~~~~~l~~L~~L~Ls~N~L 183 (767)
.|..+ ++.+...+|.++.+|+.+++.++.... ..|.....|+.|.+..|.+
T Consensus 340 ~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~~~~---~~~~~~~~L~~i~i~~~~~ 390 (394)
T 4gt6_A 340 AIPSS-VTKIPESAFSNCTALNNIEYSGSRSQW---NAISTDSGLQNLPVAPGSI 390 (394)
T ss_dssp EECTT-CCBCCGGGGTTCTTCCEEEESSCHHHH---HTCBCCCCC----------
T ss_pred EECcc-cCEEhHhHhhCCCCCCEEEECCceeeh---hhhhccCCCCEEEeCCCCE
Confidence 99755 889999999999999999999875432 4577788899888877654
No 213
>2k1m_A Myosin-binding protein C, cardiac-type; IG-I domain, cardiac muscle, hypertrophic cardiomyopathy, actin-binding, cell adhesion, disease mutation; NMR {Homo sapiens}
Probab=97.66 E-value=7.9e-05 Score=64.05 Aligned_cols=70 Identities=17% Similarity=0.294 Sum_probs=52.1
Q ss_pred CCccceeecccccccccccccccCCCcEEEeecCeeccCCCcccccccceeecccCcceeeeEEEEeeeccCCCCceeEe
Q psy12044 259 PSTFYLEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCV 338 (767)
Q Consensus 259 ~~~~~~~v~~G~~vsL~C~a~g~P~p~itW~~~g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~GtY~Cv 338 (767)
.......+..|..+.|.|.+ +.+.+.+.|++++..+..... +.....+ ....|.|.++...|.|.|.|.
T Consensus 13 ~~~~~~~v~~G~~v~l~C~~-~~p~~~v~W~k~~~~l~~~~~-------~~~~~~~---~~~~L~I~~v~~~D~G~Y~C~ 81 (95)
T 2k1m_A 13 KKPRSVEVAAGSPAVFEAET-ERAGVKVRWQRGGSDISASNK-------YGLATEG---TRHTLTVREVGPADQGSYAVI 81 (95)
T ss_dssp BCCCCEEEETTSCEEEEEEC-SSSSCCCEEECSSSEECSSTT-------CEEEEET---TEEEEEESSCCTTCCSEEEEE
T ss_pred eCCCcEEEeCCCcEEEEEEe-CCCCCeEEEEECCEECCCCCc-------EEEEEcC---CEEEEEEcCCCcccCEEEEEE
Confidence 33456678899999999999 788899999998876643221 1111111 135799999999999999999
Q ss_pred e
Q psy12044 339 A 339 (767)
Q Consensus 339 A 339 (767)
+
T Consensus 82 a 82 (95)
T 2k1m_A 82 A 82 (95)
T ss_dssp E
T ss_pred E
Confidence 9
No 214
>2lvc_A Obscurin-like protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, structural prote; NMR {Homo sapiens}
Probab=97.66 E-value=4.6e-05 Score=65.75 Aligned_cols=68 Identities=25% Similarity=0.515 Sum_probs=51.2
Q ss_pred eeecccccccccccccccCCCcEEEeecCeeccCCCcccccccceeecccCcceeeeEEEEeeeccCCCCceeEeeccC
Q psy12044 264 LEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCVAENQ 342 (767)
Q Consensus 264 ~~v~~G~~vsL~C~a~g~P~p~itW~~~g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~GtY~CvA~N~ 342 (767)
+++.+|+.+.|.|.+.+ |.+.+.|++++..+...... .....+ ....|.|.++..+|.|.|.|.|.|.
T Consensus 16 v~~~~g~~v~l~C~v~~-p~~~v~W~k~g~~i~~~~~~-------~i~~~~---~~~~L~I~~v~~~D~G~Y~C~a~n~ 83 (91)
T 2lvc_A 16 VHAITSECVMLACEVDR-EDAPVRWYKDGQEVEESDFV-------VLENEG---PHRRLVLPATQPSDGGEFQCVAGDE 83 (91)
T ss_dssp EECCTTCCEEEEEECSC-TTSCCEEEETTSCCCCCSSC-------EEEEET---TEEEEEESSCCGGGCSEEEEECSSC
T ss_pred EEEECCCcEEEEEEECC-CCcEEEEEECCEEeeeeeee-------eEEecC---CeEEEEeCCCChhhcEEEEEEEcce
Confidence 45678999999999866 88999999998877543221 111111 2357999999999999999999764
No 215
>2e7b_A Obscurin; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yz8_A
Probab=97.64 E-value=9.2e-05 Score=64.46 Aligned_cols=87 Identities=20% Similarity=0.368 Sum_probs=61.0
Q ss_pred CCCCCCccceeecccccccccccccccCCCcEEEeecCeeccCCCcccccccceeecccCcceeeeEEEEeeeccCCCCc
Q psy12044 255 PQITPSTFYLEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGT 334 (767)
Q Consensus 255 P~i~~~~~~~~v~~G~~vsL~C~a~g~P~p~itW~~~g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~Gt 334 (767)
|.+........+.+|+.+.|.|.+.+.|.+ +.|++++..+..... +..... .....|.|.++..+|.|.
T Consensus 9 p~~~~~~~~~~v~~G~~v~l~C~~~~~p~~-v~W~k~~~~l~~~~~-------~~~~~~---~~~~~L~I~~v~~~D~G~ 77 (103)
T 2e7b_A 9 VRFQEALKDLEVLEGGAATLRCVLSSVAAP-VKWCYGNNVLRPGDK-------YSLRQE---GAMLELVVRNLRPQDSGR 77 (103)
T ss_dssp CCCTBCCCCEEEESSSCEEEEEECSSCCCS-CEEEESSSBCCCSSS-------EEEEEC---SSEEEEEECSCCTTTCCC
T ss_pred CEEEecCccEEEECCCcEEEEEEEeCCCCC-eEEEECCEECCCCCc-------EEEEEc---CCEEEEEEccCCcccCEE
Confidence 334444556788899999999999999999 999998776642211 111111 124579999999999999
Q ss_pred eeEeeccCCCCcccceEEEEEe
Q psy12044 335 FVCVAENQAGSTSSNYTIRIVL 356 (767)
Q Consensus 335 Y~CvA~N~~G~s~~s~sL~V~~ 356 (767)
|.|. .|.....+.+.|..
T Consensus 78 Y~C~----~g~~~~~~~l~V~~ 95 (103)
T 2e7b_A 78 YSCS----FGDQTTSATLTVTA 95 (103)
T ss_dssp EEEE----CSSCBCCBCEEEEC
T ss_pred EEEE----ECCcEEEEEEEEEe
Confidence 9998 45555556665554
No 216
>3mjg_X Beta-type platelet-derived growth factor receptor; protein-protein complex, growth factor-receptor complex, TRA hormone complex; HET: NDG NAG; 2.30A {Homo sapiens}
Probab=97.61 E-value=8.6e-05 Score=76.79 Aligned_cols=91 Identities=18% Similarity=0.287 Sum_probs=67.7
Q ss_pred ceeecccccccccccccccCCCcEEEeecCeeccCCCcccccccceeecccCcceeeeEEEEeeeccCCCCceeEeeccC
Q psy12044 263 YLEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCVAENQ 342 (767)
Q Consensus 263 ~~~v~~G~~vsL~C~a~g~P~p~itW~~~g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~GtY~CvA~N~ 342 (767)
...+.+|+.+.|.|.+.+.|.+.+.|.+++......... .............+.|.|.++..+|.|.|.|.|.|.
T Consensus 190 ~~~v~~G~~v~L~C~~~g~p~p~v~W~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~ 264 (289)
T 3mjg_X 190 QTVVRQGENITLMCIVIGNEVVNFEWTYPRKESGRLVEP-----VTDFLLDMPYHIRSILHIPSAELEDSGTYTCNVTES 264 (289)
T ss_dssp CSEEETTSCEEEEEEEESCSSBEEEEECTTSSSSCCCCC-----EEEESCTTTTEEEEEEEESSCCSSCCEEEEEEEEET
T ss_pred cceeEcCCCEEEEEEECCCCCcceEEEcCCccCCCcccc-----cccccCCcceEEEEEEEEcccChhhCcEEEEEeecC
Confidence 356789999999999999999999999866543221110 011111222445678999999999999999999999
Q ss_pred CCCcccceEEEEEeec
Q psy12044 343 AGSTSSNYTIRIVLKE 358 (767)
Q Consensus 343 ~G~s~~s~sL~V~~~~ 358 (767)
.|.......+.+...+
T Consensus 265 ~G~~~~~~~l~v~~~~ 280 (289)
T 3mjg_X 265 VNDHQDEKAINITVVE 280 (289)
T ss_dssp TTTEEEEEEEEEEEEC
T ss_pred CCCceeEEEEEEEEEe
Confidence 9999988888877643
No 217
>2cr6_A KIAA1556 protein, obscurin; IG-fold, immunoglobulin domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.60 E-value=5.3e-05 Score=67.73 Aligned_cols=83 Identities=18% Similarity=0.371 Sum_probs=60.1
Q ss_pred ccceeecccccccccccccccCCCcEEEeecCeeccCCCcccccccceeecccCcceeeeEEEEeeeccCCCCceeEeec
Q psy12044 261 TFYLEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCVAE 340 (767)
Q Consensus 261 ~~~~~v~~G~~vsL~C~a~g~P~p~itW~~~g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~GtY~CvA~ 340 (767)
.....+.+|+.+.|.|.+.+.|.|.+.|++++..+...... ..... ......|.|.++..+|.|.|.|.+
T Consensus 20 ~~~~~v~~G~~v~l~C~~~g~p~p~v~W~k~g~~l~~~~~~-------~~~~~--~~~~~~L~I~~v~~~D~G~Y~C~~- 89 (115)
T 2cr6_A 20 LEDVDVQEGSSATFRCRISPANYEPVHWFLDKTPLHANELN-------EIDAQ--PGGYHVLTLRQLALKDSGTIYFEA- 89 (115)
T ss_dssp CCEEEEETTSCEECCCEEESTTCCSCEEEESSCEECCSSSC-------CBCCB--TTTBCCBEECSCCTTTCEEEEEEE-
T ss_pred CccEEEeCCCcEEEEEEEcCCCCCccEEEECCEECCCCCcE-------EEEEc--CCCEEEEEEcCCChhhCEEEEEEE-
Confidence 34567889999999999999999999999998776543221 00000 112346999999999999999994
Q ss_pred cCCCCcccceEEEEEe
Q psy12044 341 NQAGSTSSNYTIRIVL 356 (767)
Q Consensus 341 N~~G~s~~s~sL~V~~ 356 (767)
|.....+.+.|..
T Consensus 90 ---g~~~~~~~L~V~~ 102 (115)
T 2cr6_A 90 ---GDQRASAALRVTE 102 (115)
T ss_dssp ---TTEECCEEEEEEC
T ss_pred ---CCeeEEEEEEEEC
Confidence 5555566666654
No 218
>1eaj_A Coxsackie virus and adenovirus receptor; virus/viral protein receptor, immunoglobulin V domain fold, symmetric dimer; 1.35A {Homo sapiens} SCOP: b.1.1.1 PDB: 1f5w_A 2j12_B 2j1k_A 2wbw_B* 2w9l_A* 1rsf_A 1jew_R 1kac_B 1p69_B 1p6a_B
Probab=97.60 E-value=6.2e-05 Score=67.28 Aligned_cols=103 Identities=20% Similarity=0.316 Sum_probs=63.4
Q ss_pred CCCCCCCCccceeecccccccccccccccCC----CcEEEeecC-------eeccC--CC-c----ccccccceeecccC
Q psy12044 253 CEPQITPSTFYLEIQEGKNVSLLCKVSAIPE----AKITWLFDG-------VPIQN--ES-M----SASESHAVYSTEEG 314 (767)
Q Consensus 253 C~P~i~~~~~~~~v~~G~~vsL~C~a~g~P~----p~itW~~~g-------~~l~~--~s-~----~~~~~~~~~~~~~g 314 (767)
|...+...+..+.+..|+.++|.|.+.+.+. +.+.|.+.+ ..+.. .. . ......+..+....
T Consensus 4 ~~~~v~~~~~~v~~~~G~~v~L~C~~~~~~~~~~~~~v~W~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~r~~~~~~~ 83 (126)
T 1eaj_A 4 RSLSITTPEEMIEKAKGETAYLPCKFTLSPEDQGPLDIEWLISPADNQKVDQVIILYSGDKIYDDYYPDLKGRVHFTSND 83 (126)
T ss_dssp SSCEESSSEEEEEEETTSCEEECCBEECCTTCCSCEEEEEEEEETTSSCCSEEEEEEETTEEECTTSSTTTTTEEECCSC
T ss_pred ccEEEECCCceEEEEeCCCEEEEEEEecCCCCCCceEEEEEEeCCCcCCCceEEEEEeCCeeccccCccccCeeEEEccc
Confidence 4444444555678899999999999887654 359998843 11110 00 0 00001112222221
Q ss_pred cceeeeEEEEeeeccCCCCceeEeeccCCCCcccceEEEEE
Q psy12044 315 TEIKKSELLIYNSNIDDNGTFVCVAENQAGSTSSNYTIRIV 355 (767)
Q Consensus 315 ~~~~~s~L~I~nvs~sD~GtY~CvA~N~~G~s~~s~sL~V~ 355 (767)
.......|.|.++..+|.|.|.|.+.+..|.....+.|.|.
T Consensus 84 ~~~~~~sL~I~~v~~~D~G~Y~C~v~~~~~~~~~~~~L~V~ 124 (126)
T 1eaj_A 84 LKSGDASINVTNLQLSDIGTYQCKVKKAPGVANKKIHLVVL 124 (126)
T ss_dssp GGGTBCCEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEE
T ss_pred ccCCeEEEEECcCChHHCeEEEEEEEcCCccCCcEEEEEEE
Confidence 23334679999999999999999999987765555555543
No 219
>2r15_A Myomesin-1; sarcomeric protein, IG-like domains, homodimer, immunoglobul domain, muscle protein, thick filament, contractIle protein; 2.24A {Homo sapiens}
Probab=97.59 E-value=4.8e-05 Score=74.61 Aligned_cols=85 Identities=25% Similarity=0.443 Sum_probs=64.9
Q ss_pred ceeecccccccccccccccCCCcEEEeecCeeccCCCcccccccceeecccCcceeeeEEEEeeeccCCCCceeEeeccC
Q psy12044 263 YLEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCVAENQ 342 (767)
Q Consensus 263 ~~~v~~G~~vsL~C~a~g~P~p~itW~~~g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~GtY~CvA~N~ 342 (767)
...+..|..+.|.|.+.+.|.|.+.|.+++..+...... ..... ......|.|.++...|.|.|.|.|.|.
T Consensus 126 ~~~v~~g~~~~l~C~~~g~p~p~v~W~~~~~~~~~~~~~-------~~~~~--~~~~~~L~i~~~~~~d~G~Y~C~a~N~ 196 (212)
T 2r15_A 126 VVTIQEGKALNLTCNVWGDPPPEVSWLKNEKALAQTDHC-------NLKFE--AGRTAYFTINGVSTADSGKYGLVVKNK 196 (212)
T ss_dssp EEEEETTCCEEEEEEEECSSCCEEEEEETTEEECCCSSE-------EEEEE--TTTEEEEEESSCCGGGCEEEEEEEEET
T ss_pred cEEEccCCeEEEEEEEcCCCCceEEEEECCeECccCCCE-------EEEEc--CCCEEEEEEcCcchHHCeEEEEEEEcC
Confidence 456788999999999999999999999998776543211 11111 012368999999999999999999999
Q ss_pred CCCcccceEEEEEe
Q psy12044 343 AGSTSSNYTIRIVL 356 (767)
Q Consensus 343 ~G~s~~s~sL~V~~ 356 (767)
.|.....+.+.|..
T Consensus 197 ~g~~~~~~~l~V~~ 210 (212)
T 2r15_A 197 YGSETSDFTVSVFI 210 (212)
T ss_dssp TEEEEEEEEEEEEC
T ss_pred CCcEEEEEEEEEEc
Confidence 99887777666543
No 220
>2yuv_A Myosin-binding protein C, SLOW-type; SLOW-type myosin-binding protein C, immunoglobulin domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2yxm_A
Probab=97.55 E-value=0.00012 Score=63.46 Aligned_cols=77 Identities=17% Similarity=0.391 Sum_probs=54.5
Q ss_pred eeecccccccccccccccCCCcEEEeecCeeccCCCcccccccceeecccCcceeeeEEEEeeeccCCCCceeEeeccCC
Q psy12044 264 LEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCVAENQA 343 (767)
Q Consensus 264 ~~v~~G~~vsL~C~a~g~P~p~itW~~~g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~GtY~CvA~N~~ 343 (767)
..+..|+.+.|.|.+. .|.+.+.|++++..+..... +.....+ ....|.|.++..+|.|.|.|.+
T Consensus 18 ~~v~~G~~v~l~C~~~-~p~~~v~W~k~g~~i~~~~~-------~~~~~~~---~~~~L~I~~~~~~D~G~Y~C~a---- 82 (100)
T 2yuv_A 18 YQVDKGGRVRFVVELA-DPKLEVKWYKNGQEIRPSTK-------YIFEHKG---CQRILFINNCQMTDDSEYYVTA---- 82 (100)
T ss_dssp EEECTTEEEEEEEEES-CTTSCEEEEESSCBCCCBTT-------EEEEEET---TEEEEEEEEECTTTCCEEEEEE----
T ss_pred cEEcCCCcEEEEEEec-CCCceEEEEECCEECCCCCC-------EEEEecC---CEEEEEEcCCCcCcCEEEEEEE----
Confidence 4677899999999998 79999999998876643221 1111111 2347999999999999999999
Q ss_pred CCcccceEEEEE
Q psy12044 344 GSTSSNYTIRIV 355 (767)
Q Consensus 344 G~s~~s~sL~V~ 355 (767)
|.....+.+.|.
T Consensus 83 g~~~~~~~l~V~ 94 (100)
T 2yuv_A 83 GDEKCSTELFVR 94 (100)
T ss_dssp TTEEEEEEEEEC
T ss_pred CCceEEEEEEEe
Confidence 444444444443
No 221
>2j8h_A Titin, connectin; cardiomyopathy, nuclear protein, serine/threonine-protein KI LIMB-girdle muscular dystrophy, phosphorylation; 1.99A {Homo sapiens} PDB: 2j8o_A 2ill_A
Probab=97.55 E-value=9.5e-05 Score=71.66 Aligned_cols=90 Identities=23% Similarity=0.360 Sum_probs=66.4
Q ss_pred CccceeecccccccccccccccCCCcEEEeecCeeccCCCcccccccceeecccCcceeeeEEEEeeeccCCCCceeEee
Q psy12044 260 STFYLEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCVA 339 (767)
Q Consensus 260 ~~~~~~v~~G~~vsL~C~a~g~P~p~itW~~~g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~GtY~CvA 339 (767)
.+....+.+|+.+.|.|.+.+.|.+.+.|.+++..+..... + +.... .......|.|.++...|.|.|.|.+
T Consensus 10 ~~~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~-----~-~~~~~--~~~~~~~L~i~~~~~~d~G~Y~C~~ 81 (197)
T 2j8h_A 10 ELRNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADGL-----K-YRIQE--FKGGYHQLIIASVTDDDATVYQVRA 81 (197)
T ss_dssp CCCCEEEETTSCEEEEEEEECSSCCEEEEEETTEECCCCSS-----S-EEEEE--ETTTEEEEEECSCCGGGCSEEEEEE
T ss_pred cCCccEEcCCCEEEEEEEEeecCCCEEEEEECCEECccCCC-----c-EEEEE--cCCCEEEEEECcCCHHhCEEEEEEE
Confidence 34456788999999999999999999999998877653211 0 11110 0112348999999999999999999
Q ss_pred ccCCCCcccceEEEEEee
Q psy12044 340 ENQAGSTSSNYTIRIVLK 357 (767)
Q Consensus 340 ~N~~G~s~~s~sL~V~~~ 357 (767)
.|..|.....+.+.|...
T Consensus 82 ~n~~g~~~~~~~l~V~~~ 99 (197)
T 2j8h_A 82 TNQGGSVSGTASLEVEVP 99 (197)
T ss_dssp EETTEEEEEEEEEEEEEE
T ss_pred EECCCceeEEEEEEEcCC
Confidence 999888777777766543
No 222
>2v5t_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; phosphorylation, immunoglobulin domain, membrane, glycoprote adhesion, transmembrane; HET: NAG; 2.00A {Homo sapiens}
Probab=97.55 E-value=5.3e-05 Score=72.73 Aligned_cols=82 Identities=24% Similarity=0.475 Sum_probs=63.6
Q ss_pred ceeecccccccccccccccCCCcEEEeecCeeccCCCcccccccceeecccCcceeeeEEEEeeeccCCCCceeEeeccC
Q psy12044 263 YLEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCVAENQ 342 (767)
Q Consensus 263 ~~~v~~G~~vsL~C~a~g~P~p~itW~~~g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~GtY~CvA~N~ 342 (767)
...+..|..+.|.|.+.+.|.+.+.|.+++..+...... ... ...+.|.|.++...|.|.|.|.|.|.
T Consensus 107 ~~~~~~g~~v~l~C~~~g~p~~~v~W~~~g~~~~~~~~~-------~~~-----~~~~~L~i~~~~~~d~G~Y~C~a~n~ 174 (189)
T 2v5t_A 107 NATAERGEEMTFSCRASGSPEPAISWFRNGKLIEENEKY-------ILK-----GSNTELTVRNIINSDGGPYVCRATNK 174 (189)
T ss_dssp EEETTSCCCEEEECEEEEESCCEEEEEETTEECCCSSSE-------EEE-----TTTTEEEECSCCGGGCEEEEEEEEET
T ss_pred cccccCCCcEEEEEEEccCCCCeEEEEECCEECcCCCcE-------EEe-----cCCCEEEEcCCChhhCeeEEEEEEeC
Confidence 345678999999999999999999999988776543211 111 11357999999999999999999999
Q ss_pred CCCcccceEEEEEe
Q psy12044 343 AGSTSSNYTIRIVL 356 (767)
Q Consensus 343 ~G~s~~s~sL~V~~ 356 (767)
.|.....+.+.|.+
T Consensus 175 ~g~~~~~~~l~V~v 188 (189)
T 2v5t_A 175 AGEDEKQAFLQVFV 188 (189)
T ss_dssp TEEEEEEEEEEEEC
T ss_pred CCceeEEEEEEEEe
Confidence 99888777766643
No 223
>3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor protein tyrosine phosphatase; HET: NAG; 2.00A {Mus musculus} PDB: 3jxa_A*
Probab=97.54 E-value=3.5e-05 Score=83.91 Aligned_cols=80 Identities=26% Similarity=0.476 Sum_probs=64.1
Q ss_pred cceeecccccccccccccccCCCcEEEeecCeeccCCCcccccccceeecccCcceeeeEEEEeeeccCCCCceeEeecc
Q psy12044 262 FYLEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCVAEN 341 (767)
Q Consensus 262 ~~~~v~~G~~vsL~C~a~g~P~p~itW~~~g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~GtY~CvA~N 341 (767)
....+..|..+.|.|.+.+.|.|.+.|.+++..+..... +. ...+.|.|.++..+|.|.|.|.|.|
T Consensus 303 ~~~~v~~g~~v~l~C~~~g~P~p~i~W~k~g~~l~~~~~-------~~-------~~~~~L~i~~v~~~D~G~Y~C~A~N 368 (384)
T 3kld_A 303 NDIHVAMEESVFWECKANGRPKPTYRWLKNGDPLLTRDR-------IQ-------IEQGTLNITIVNLSDAGMYQCVAEN 368 (384)
T ss_dssp CCEEECTTCCEEEECEEEEESCCEEEEEETTEECCCBTT-------EE-------EETTEEEESSCCGGGCEEEEEEEEE
T ss_pred CceEecCCCCEEEEeECCccCCCeEEEEECCEECCCCcc-------EE-------EeCCEEEEeecChhhCEEEEEEEEe
Confidence 345677899999999999999999999999887643221 11 1124799999999999999999999
Q ss_pred CCCCcccceEEEEE
Q psy12044 342 QAGSTSSNYTIRIV 355 (767)
Q Consensus 342 ~~G~s~~s~sL~V~ 355 (767)
..|...+++.|.|.
T Consensus 369 ~~G~~~~~a~L~V~ 382 (384)
T 3kld_A 369 KHGVIFSSAELSVI 382 (384)
T ss_dssp TTEEEEEEEEEEEC
T ss_pred CCceEEeceEEEEe
Confidence 99998887777664
No 224
>1z9m_A GAPA225; nectin-like, IG-like domain, V domain, cell adhesion; 2.40A {Homo sapiens}
Probab=97.52 E-value=0.00013 Score=68.12 Aligned_cols=94 Identities=14% Similarity=0.180 Sum_probs=61.9
Q ss_pred CccceeecccccccccccccccCCCcEEEeecCeeccCCCc-ccccccceeecccCcceeeeEEEEeeeccCCCCceeEe
Q psy12044 260 STFYLEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESM-SASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCV 338 (767)
Q Consensus 260 ~~~~~~v~~G~~vsL~C~a~g~P~p~itW~~~g~~l~~~s~-~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~GtY~Cv 338 (767)
.+....+..|+.+.|.|.+.+.+.+.+.|...+........ .......+..... ......|.|.++...|.|.|.|.
T Consensus 44 ~p~~~~v~~G~~v~L~C~~~~~~~~~i~W~~~~~~~i~~~~~~~~~~~r~~~~~~--~~~~~~L~I~~v~~~DsG~Y~C~ 121 (145)
T 1z9m_A 44 WTSDETVVAGGTVVLKCQVKDHEDSSLQWSNPAQQTLYFGEKRALRDNRIQLVTS--TPHELSISISNVALADEGEYTCS 121 (145)
T ss_dssp BCCCEEEETTSCEEEEEECSCCTTCCEEEECTTCCEEEETTEECSCCTTEEEEEE--CSSEEEEEECSCCGGGCEEEEEE
T ss_pred CCceEEEEcCCCEEEEEEEcCCCCcEEEEECCCCcEEEECCceecccCCEEEecC--CCCeEEEEECCCChhhCEEEEEE
Confidence 44567889999999999999999999999853321110000 0000011111110 11246899999999999999999
Q ss_pred eccCCCCcccceEEEEEe
Q psy12044 339 AENQAGSTSSNYTIRIVL 356 (767)
Q Consensus 339 A~N~~G~s~~s~sL~V~~ 356 (767)
+.|. |.....+.+.|..
T Consensus 122 ~~n~-~~~~~~~~L~V~~ 138 (145)
T 1z9m_A 122 IFTM-PVRTAKSLVTVLG 138 (145)
T ss_dssp ECSS-SCEEEEEEEEEEC
T ss_pred EEcC-CCceEEEEEEEEe
Confidence 9999 7766666666654
No 225
>3mtr_A N-CAM-1, NCAM-1, neural cell adhesion molecule 1; immunoglobulin domain, fibronectin type III repeat, CE adhesion; 1.80A {Homo sapiens}
Probab=97.52 E-value=8.6e-05 Score=73.55 Aligned_cols=88 Identities=25% Similarity=0.385 Sum_probs=67.1
Q ss_pred ccceeecccccccccccccccCCCcEEEeecCeeccCCCcccccccceeecccCcceeeeEEEEeeeccCCCCceeEeec
Q psy12044 261 TFYLEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCVAE 340 (767)
Q Consensus 261 ~~~~~v~~G~~vsL~C~a~g~P~p~itW~~~g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~GtY~CvA~ 340 (767)
+....+..|+.+.|.|.+.+.|.+.+.|.+++..+...... .+.... ....+.|.|.++...|.|.|.|.+.
T Consensus 25 p~~~~~~~G~~v~l~C~~~g~p~p~i~W~~~g~~l~~~~~~-----~~~~~~---~~~~~~L~i~~~~~~d~G~Y~C~a~ 96 (215)
T 3mtr_A 25 PVAVYTWEGNQVNITCEVFAYPSATISWFRDGQLLPSSNYS-----NIKIYN---TPSASYLEVTPDSENDFGNYNCTAV 96 (215)
T ss_dssp CSEEEECTTCCEEEEEEEEEESCCEEEEEETTEESSCSSSC-----SEEEEE---ETTEEEEEECCCSGGGCEEEEEEEE
T ss_pred CceEEEECCCCEEEEEEEeecCCCEEEEEECCeECCCCCCc-----cEEEec---CCCeeEEEEecCChhhCeEEEEEEE
Confidence 33467889999999999999999999999998876543211 111111 1125789999999999999999999
Q ss_pred cCCCCcccceEEEEEe
Q psy12044 341 NQAGSTSSNYTIRIVL 356 (767)
Q Consensus 341 N~~G~s~~s~sL~V~~ 356 (767)
|..|.....+.+.+..
T Consensus 97 n~~g~~~~~~~l~v~~ 112 (215)
T 3mtr_A 97 NRIGQESLEFILVQAD 112 (215)
T ss_dssp CSSCEEEEEEEEEECC
T ss_pred ECCCceEEEEEEEECC
Confidence 9999887777666654
No 226
>3s97_C Contactin-1; carbonic anhdyrase like immunoglobulin, cell adhesion comple adhesion; HET: NAG; 2.30A {Homo sapiens}
Probab=97.52 E-value=3.4e-05 Score=74.77 Aligned_cols=78 Identities=26% Similarity=0.394 Sum_probs=61.5
Q ss_pred ceeecccccccccccccccCCCcEEEeecCeeccCCCcccccccceeecccCcceeeeEEEEeeeccCCCCceeEeeccC
Q psy12044 263 YLEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCVAENQ 342 (767)
Q Consensus 263 ~~~v~~G~~vsL~C~a~g~P~p~itW~~~g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~GtY~CvA~N~ 342 (767)
...+..|..+.|.|.+.+.|.+.+.|.+++..+...... . .....|.|.++...|.|.|+|.+.|.
T Consensus 122 ~~~~~~g~~~~l~C~~~g~p~p~v~W~~~~~~~~~~~~~---------~-----~~~~~L~i~~v~~~d~G~Y~C~a~n~ 187 (201)
T 3s97_C 122 DVYALMGQNVTLECFALGNPVPDIRWRKVLEPMPSTAEI---------S-----TSGAVLKIFNIQLEDEGIYECEAENI 187 (201)
T ss_dssp CEEEETTCCEEEEEEEEEESCCEEEEEETTBCCCTTCEE---------E-----TTTTEEEECSCCGGGCEEEEEEEEET
T ss_pred ceEEecCCcEEEEEEccCCCCCceEEEeCCCcCCCceee---------c-----CCCCEEEEccCChhhCEEEEEEEEec
Confidence 456778999999999999999999999988755432111 0 11347999999999999999999999
Q ss_pred CCCcccceEEEE
Q psy12044 343 AGSTSSNYTIRI 354 (767)
Q Consensus 343 ~G~s~~s~sL~V 354 (767)
.|.....+.+.|
T Consensus 188 ~g~~~~~~~l~V 199 (201)
T 3s97_C 188 RGKDKHQARIYV 199 (201)
T ss_dssp TEEEEEEEEEEE
T ss_pred CCceeeeEEEEE
Confidence 998877666655
No 227
>2yd1_A Tyrosine-protein phosphatase LAR; hydrolase; 1.80A {Drosophila melanogaster} PDB: 3pxj_A
Probab=97.51 E-value=7.3e-05 Score=73.82 Aligned_cols=82 Identities=27% Similarity=0.417 Sum_probs=63.6
Q ss_pred cceeecccccccccccccccCCCcEEEeecCeeccCCCcccccccceeecccCcceeeeEEEEeeeccCCCCceeEeecc
Q psy12044 262 FYLEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCVAEN 341 (767)
Q Consensus 262 ~~~~v~~G~~vsL~C~a~g~P~p~itW~~~g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~GtY~CvA~N 341 (767)
....+..|..+.|.|.+.+.|.+.+.|.+++..+...... +. ...+.|.|.++...|.|.|+|.|.|
T Consensus 118 ~~~~~~~g~~v~l~C~~~g~p~p~i~W~~~~~~~~~~~~~------~~-------~~~~~L~i~~v~~~d~G~Y~C~a~N 184 (212)
T 2yd1_A 118 GTRVIEVGHTVLMTCKAIGNPTPNIYWIKNQTKVDMSNPR------YS-------LKDGFLQIENSREEDQGKYECVAEN 184 (212)
T ss_dssp CCEEEETTCCEEECCEEECSSCCEEEEEETTEECCTTSTT------EE-------EETTEEEECSCCGGGCEEEEEEEEE
T ss_pred CceEeecCCeEEEEEEeccCCCCeEEEEECCeEcccCCCe------EE-------ccCCeEEEccCChhhCEEEEEEeec
Confidence 3456778999999999999999999999988776432111 11 1124799999999999999999999
Q ss_pred CCCCcccc-eEEEEEe
Q psy12044 342 QAGSTSSN-YTIRIVL 356 (767)
Q Consensus 342 ~~G~s~~s-~sL~V~~ 356 (767)
..|...+. +.+.|..
T Consensus 185 ~~G~~~s~~~~l~V~~ 200 (212)
T 2yd1_A 185 SMGTEHSKATNLYVKV 200 (212)
T ss_dssp TTEEEECCCEEEEEEC
T ss_pred CCCceeEEEEEEEEEe
Confidence 99988764 6666654
No 228
>2rik_A Titin; I-SET IG fold, poly-IG linear array, structural protein; 1.60A {Oryctolagus cuniculus} PDB: 2rjm_A
Probab=97.51 E-value=7.9e-05 Score=76.78 Aligned_cols=90 Identities=22% Similarity=0.362 Sum_probs=67.0
Q ss_pred CCCCCCccceeecccccccccccccccCCCcEEEeecCeeccCCCcccccccceeecccCcceeeeEEEEeeeccCCCCc
Q psy12044 255 PQITPSTFYLEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGT 334 (767)
Q Consensus 255 P~i~~~~~~~~v~~G~~vsL~C~a~g~P~p~itW~~~g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~Gt 334 (767)
|.+...+....+..|..+.|.|.+.+.|.+.+.|.+++..+...... .... ......|.|.++...|.|.
T Consensus 193 p~~~~~~~~~~~~~g~~v~l~C~~~g~p~~~v~W~~~~~~~~~~~~~-------~~~~---~~~~~~L~i~~v~~~d~G~ 262 (284)
T 2rik_A 193 PVFRKKPHPVETLKGADVHLECELQGTPPFQVSWHKDKRELRSGKKY-------KIMS---ENFLTSIHILNVDSADIGE 262 (284)
T ss_dssp CBCCSCCCCEEECTTCCEEEEEECBSSSCCEEEEEETTEEECBTTTE-------EEEE---ETTEEEEEECSCCGGGCEE
T ss_pred CcceeCCCcceecCCCeEEEEEEEEecCCCEEEEEECCEECcCCCCE-------EEEE---cCCEEEEEEcCCCcccCEE
Confidence 33444444567788999999999999999999999998776543211 1111 1123579999999999999
Q ss_pred eeEeeccCCCCcccceEEEE
Q psy12044 335 FVCVAENQAGSTSSNYTIRI 354 (767)
Q Consensus 335 Y~CvA~N~~G~s~~s~sL~V 354 (767)
|.|.|.|..|.....+.+.|
T Consensus 263 Y~C~a~N~~G~~~~~~~l~V 282 (284)
T 2rik_A 263 YQCKASNDVGSYTCVGSITL 282 (284)
T ss_dssp EEEEEEETTEEEEEEEEEEE
T ss_pred EEEEEEeCCCceeEEEEEEE
Confidence 99999999998877666654
No 229
>4fqp_A Poliovirus receptor; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; HET: NAG BMA FUC MAN; 3.60A {Homo sapiens} PDB: 1nn8_R 1dgi_R
Probab=97.50 E-value=6e-05 Score=79.28 Aligned_cols=76 Identities=20% Similarity=0.321 Sum_probs=60.7
Q ss_pred eecccccccccccccccCCC-cEEEeecCeeccCCCcccccccceeecccCcceeeeEEEEeeeccCCCCceeEeeccCC
Q psy12044 265 EIQEGKNVSLLCKVSAIPEA-KITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCVAENQA 343 (767)
Q Consensus 265 ~v~~G~~vsL~C~a~g~P~p-~itW~~~g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~GtY~CvA~N~~ 343 (767)
.+..|..+.|.|.+.+.|.| .+.|.+++..+..... .....|.|.++...|.|.|.|.|.|..
T Consensus 228 ~~~~g~~v~l~C~~~g~P~p~~v~W~~~~~~l~~~~~----------------~~~~~L~i~~v~~~d~G~Y~C~a~N~~ 291 (313)
T 4fqp_A 228 WYLGQNEATLTCDARSNPEPTGYNWSTTMGPLPPFAV----------------AQGAQLLIRPVDKPINTTLICNVTNAL 291 (313)
T ss_dssp EETTCCCEEEEEEEEEESCCCEEEEEETTBSCCTTEE----------------EETTEEEECCCSSCCEEEEEEEEECSS
T ss_pred eecCCCeEEEEEEecCCCCCcEEEEEECCEECCCceE----------------EeCCEEEECcCChhhCEEEEEEEEeCC
Confidence 34567889999999999999 6999998876533211 123479999999999999999999999
Q ss_pred CCcccceEEEEEe
Q psy12044 344 GSTSSNYTIRIVL 356 (767)
Q Consensus 344 G~s~~s~sL~V~~ 356 (767)
|.....+.+.|..
T Consensus 292 G~~~~~~~l~V~~ 304 (313)
T 4fqp_A 292 GARQAELTVQVKE 304 (313)
T ss_dssp CEEEEEEEEEEEC
T ss_pred CcEEEEEEEEEEe
Confidence 9888777776654
No 230
>2j8h_A Titin, connectin; cardiomyopathy, nuclear protein, serine/threonine-protein KI LIMB-girdle muscular dystrophy, phosphorylation; 1.99A {Homo sapiens} PDB: 2j8o_A 2ill_A
Probab=97.49 E-value=7.4e-05 Score=72.43 Aligned_cols=83 Identities=22% Similarity=0.240 Sum_probs=62.7
Q ss_pred cceeecccccccccccccccCCCcEEEeecCeeccCCCcccccccceeecccCcceeeeEEEEee-eccCCCCceeEeec
Q psy12044 262 FYLEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYN-SNIDDNGTFVCVAE 340 (767)
Q Consensus 262 ~~~~v~~G~~vsL~C~a~g~P~p~itW~~~g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~n-vs~sD~GtY~CvA~ 340 (767)
....+..|..+.|.|.+.+.|.+.+.|.+++..+...... .... ......|.|.+ +...|.|.|.|.+.
T Consensus 112 ~~~~~~~g~~~~l~C~~~g~p~p~i~W~~~~~~~~~~~~~-------~~~~---~~~~~~L~i~~~~~~~d~G~Y~C~a~ 181 (197)
T 2j8h_A 112 GAVHALRGEVVSIKIPFSGKPDPVITWQKGQDLIDNNGHY-------QVIV---TRSFTSLVFPNGVERKDAGFYVVCAK 181 (197)
T ss_dssp EEEEEETTCCCEEEEEEEEESCCEEEEEESSCEECSSSSC-------EEEE---CSSEEEEECTTCCCGGGCEEEEEEEE
T ss_pred CeEEEeCCCEEEEEEEEEecCCCcEEEEECCEEeecCCCE-------EEEE---cCCceEEEEeCCCCcccCEeEEEEEE
Confidence 3456778999999999999999999999988766532211 1111 11246799999 99999999999999
Q ss_pred cCCCCcccceEEEE
Q psy12044 341 NQAGSTSSNYTIRI 354 (767)
Q Consensus 341 N~~G~s~~s~sL~V 354 (767)
|..|.....+.+.|
T Consensus 182 N~~g~~~~~~~l~V 195 (197)
T 2j8h_A 182 NRFGIDQKTVELDV 195 (197)
T ss_dssp ETTEEEEEEEEEEE
T ss_pred eCCCcEeEEEEEEE
Confidence 99998766665554
No 231
>2wv3_A Neuroplastin; igcam, membrane, glycoprotein, cell membrane, cell adhesion, transmembrane, disulfide bond, alternative splicing; HET: NAG; 1.95A {Rattus norvegicus}
Probab=97.48 E-value=0.0001 Score=71.26 Aligned_cols=88 Identities=25% Similarity=0.383 Sum_probs=63.3
Q ss_pred ccceeecccccccccccccccCCCcEEEee--cCeeccCCCcccccccceeecccCcceeeeEEEEeeec-cCCCCceeE
Q psy12044 261 TFYLEIQEGKNVSLLCKVSAIPEAKITWLF--DGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSN-IDDNGTFVC 337 (767)
Q Consensus 261 ~~~~~v~~G~~vsL~C~a~g~P~p~itW~~--~g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs-~sD~GtY~C 337 (767)
.....+..|..+.|.|.+.+.|.+.+.|.+ ++..+..... ...+..... ...+.|.|.++. .+|.|.|.|
T Consensus 99 ~~~~~~~~g~~v~l~C~~~g~p~p~i~W~~~~~g~~~~~~~~----~~~~~~~~~---~~~~~L~i~~~~~~~d~G~Y~C 171 (190)
T 2wv3_A 99 KRSENKNEGQDAMMYCKSVGYPHPEWMWRKKENGVFEEISNS----SGRFFIINK---ENYTELNIVNLQITEDPGEYEC 171 (190)
T ss_dssp CSEEEEETTSCEEEEEEEECSSCCEEEEEEEETTEEEECCCT----TSCEEEEEC---SSEEEEEECSCCTTTSCEEEEE
T ss_pred CCcceeeCCCcEEEEEEeCccCCCceEEEEcCCCceeeeecC----CCeEEEecC---CCeeEEEEEeccccCCCEEEEE
Confidence 334567889999999999999999999999 6655431111 011111111 123579999999 799999999
Q ss_pred eeccCCCCcccceEEEEE
Q psy12044 338 VAENQAGSTSSNYTIRIV 355 (767)
Q Consensus 338 vA~N~~G~s~~s~sL~V~ 355 (767)
.|.|..|.....+.+.|.
T Consensus 172 ~a~N~~g~~~~~~~l~V~ 189 (190)
T 2wv3_A 172 NATNSIGSASVSTVLRVR 189 (190)
T ss_dssp EEECSSCEEEEEEEEEEE
T ss_pred EEEecCCcceeEEEEEEE
Confidence 999999988777766654
No 232
>2y25_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin-like D; 3.50A {Homo sapiens}
Probab=97.47 E-value=0.00012 Score=76.52 Aligned_cols=85 Identities=25% Similarity=0.455 Sum_probs=65.7
Q ss_pred ceeecccccccccccccccCCCcEEEeecCeeccCCCcccccccceeecccCcceeeeEEEEeeeccCCCCceeEeeccC
Q psy12044 263 YLEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCVAENQ 342 (767)
Q Consensus 263 ~~~v~~G~~vsL~C~a~g~P~p~itW~~~g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~GtY~CvA~N~ 342 (767)
...+..|+.+.|.|.+.+.|.+.+.|.+++..+...... ..... ......|.|.++...|.|.|.|.|.|.
T Consensus 231 ~~~v~~g~~~~l~C~~~g~p~p~i~W~~~g~~~~~~~~~-------~~~~~--~~~~~~L~i~~v~~~d~G~Y~C~a~N~ 301 (317)
T 2y25_A 231 VVTIQEGKALNLTCNVWGDPPPEVSWLKNEKALASDDHC-------NLKFE--AGRTAYFTINGVSTADSGKYGLVVKNK 301 (317)
T ss_dssp EEEEETTSBBCEEEEEECSSCCEEEEEESSSEECCCSSE-------EECCB--TTTEEEEEEBSCCSTTCEEEEEEEEET
T ss_pred cEEEEcCCEEEEEEEEecCCCCEEEEEECCEeCCCCCcE-------EEEEc--CCCEEEEEECCCCHHHCEEEEEEEEeC
Confidence 457789999999999999999999999988776433211 11111 012368999999999999999999999
Q ss_pred CCCcccceEEEEEe
Q psy12044 343 AGSTSSNYTIRIVL 356 (767)
Q Consensus 343 ~G~s~~s~sL~V~~ 356 (767)
.|.....+.+.|..
T Consensus 302 ~g~~~~~~~l~V~~ 315 (317)
T 2y25_A 302 YGSETSDFTVSVFI 315 (317)
T ss_dssp TEEEEEEEEEEEEC
T ss_pred CCeEEEEEEEEEEc
Confidence 99988777776654
No 233
>4frw_A Poliovirus receptor-related protein 4; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; 3.50A {Homo sapiens}
Probab=97.47 E-value=0.00011 Score=71.60 Aligned_cols=84 Identities=15% Similarity=0.210 Sum_probs=63.8
Q ss_pred eeecccccccccccccccCCCcEEEeecCeeccCCCcccccccceeecccCcceeeeEEEEeeeccCCCCceeEeeccCC
Q psy12044 264 LEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCVAENQA 343 (767)
Q Consensus 264 ~~v~~G~~vsL~C~a~g~P~p~itW~~~g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~GtY~CvA~N~~ 343 (767)
..+..+..+.+.|.+.+.|.|.++|.+++..+..... ....+.....+.|.|..+...|.|.|+|.|.|.+
T Consensus 128 ~~~~~~~~~~~~c~~~g~p~p~i~W~~~~~~~~~~~~---------~~~~~~~~~~s~L~i~~~~~~d~g~YtC~a~N~~ 198 (218)
T 4frw_A 128 LEEGQGLTLAASCTAEGSPAPSVTWDTEVKGTTSSRS---------FKHSRSAAVTSEFHLVPSRSMNGQPLTCVVSHPG 198 (218)
T ss_dssp EETTCCSEEEEEEEEEEBSCCEEEEEESSCCEEEEEE---------EECSSSEEEEEEEEECCCGGGTTCEEEEEEECTT
T ss_pred eeeeeccccceeeeccCCcCceEEEEECCcccccCce---------EecCCcEEEEEEEEEeeCCHHhCeEEEEEEEeCC
Confidence 3455678899999999999999999998765432211 1122333456789999999999999999999999
Q ss_pred CCcccceEEEEEe
Q psy12044 344 GSTSSNYTIRIVL 356 (767)
Q Consensus 344 G~s~~s~sL~V~~ 356 (767)
|.....+++.+.+
T Consensus 199 g~~~~~~t~~v~V 211 (218)
T 4frw_A 199 LLQDQRITHILHV 211 (218)
T ss_dssp CSSCEEEEEECCE
T ss_pred CCeEEEEEEEEEE
Confidence 9887777666554
No 234
>2a38_A Titin; Z1Z2, structural protein; 2.00A {Homo sapiens} PDB: 1ya5_A 2f8v_A
Probab=97.47 E-value=6.2e-05 Score=72.68 Aligned_cols=82 Identities=27% Similarity=0.430 Sum_probs=62.1
Q ss_pred ceeecccccccccccccccCCCcEEEeecCeeccCCCcccccccceeecccCcceeeeEEEEeeeccCCCCceeEeeccC
Q psy12044 263 YLEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCVAENQ 342 (767)
Q Consensus 263 ~~~v~~G~~vsL~C~a~g~P~p~itW~~~g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~GtY~CvA~N~ 342 (767)
...+..|..+.|.|.+.+.|.+.+.|.+++..+...... .....+ ....|.|.++...|.|.|.|.|.|.
T Consensus 112 ~~~~~~g~~~~l~C~~~g~p~~~v~W~~~~~~~~~~~~~-------~~~~~~---~~~~L~i~~~~~~d~G~Y~C~a~n~ 181 (194)
T 2a38_A 112 SMTVRQGSQVRLQVRVTGIPTPVVKFYRDGAEIQSSLDF-------QISQEG---DLYSLLIAEAYPEDSGTYSVNATNS 181 (194)
T ss_dssp CEEECTTEEEEEEEEEEEESCCEEEEEETTEECCCSSSE-------EEEEET---TEEEEEEEEECGGGCEEEEEEEEET
T ss_pred cEEEcCCCEEEEEEEEEEecCCeEEEEECCEECCCCCcE-------EEEEcC---CEEEEEECCCChhcCeEEEEEEEeC
Confidence 456788999999999999999999999988776532211 111111 1347999999999999999999999
Q ss_pred CCCcccceEEEE
Q psy12044 343 AGSTSSNYTIRI 354 (767)
Q Consensus 343 ~G~s~~s~sL~V 354 (767)
.|.....+.+.|
T Consensus 182 ~g~~~~~~~l~V 193 (194)
T 2a38_A 182 VGRATSTAELLV 193 (194)
T ss_dssp TEEEEEEEEEEE
T ss_pred CCceEEEEEEEE
Confidence 998776665544
No 235
>4fa8_A Secreted protein BARF1; immunoglobulin-like domains, 4-helix bundle fold, viral PROT cytokine complex; HET: NAG BMA; 2.20A {Human herpesvirus 4} PDB: 2ch8_A* 3uez_A* 4adf_A* 4adq_A*
Probab=97.47 E-value=5.4e-05 Score=75.35 Aligned_cols=82 Identities=15% Similarity=0.231 Sum_probs=53.1
Q ss_pred ccceeecccccccccccccccCCCcEEEeecCeeccCCCcccccccceeecccCcceeeeEEEEeeeccCCCCceeEeec
Q psy12044 261 TFYLEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCVAE 340 (767)
Q Consensus 261 ~~~~~v~~G~~vsL~C~a~g~P~p~itW~~~g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~GtY~CvA~ 340 (767)
+....+.+|..+.|.|.+.|.|.|.++|.+++..+...... ...+....++. -..+.+.++..+|.|.|+|+|.
T Consensus 113 ~~~~~v~~g~~~~l~C~~~G~P~P~v~W~~~~~~~~~~~~~---~~r~~~~~~g~---l~il~i~~v~~~D~G~YtC~A~ 186 (203)
T 4fa8_A 113 SERSQFPDFSVLTVTCTVNAFPHPHVQWLMPEGVEPAPTAA---NGGVMKEKDGS---LSVAVDLSLPKPWHLPVTCVGK 186 (203)
T ss_dssp EEECCSSCSCCEEEEEEEEEESCCEEEECCC---------------CCEECTTSC---EEEEEEEEECSSCCCCEEEEEE
T ss_pred ceeEEEcCCCEEEEEEEcCCCCCCEEEEEECCeeecCcccc---cceEEEeCCCC---EEEEEECCCCHHHCEEEEEEEE
Confidence 33456778999999999999999999999865433211110 01111222221 1245567899999999999999
Q ss_pred cCCCCccc
Q psy12044 341 NQAGSTSS 348 (767)
Q Consensus 341 N~~G~s~~ 348 (767)
|..|.+..
T Consensus 187 N~~G~a~~ 194 (203)
T 4fa8_A 187 NDKEEAHG 194 (203)
T ss_dssp SSSCEEEE
T ss_pred cCCCEEEE
Confidence 99998764
No 236
>1nbq_A JAM, junctional adhesion molecule 1, PAM-1; reovirus receptor, tight junction formation, immunoglobulin superfamily, immune system; 2.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 PDB: 3eoy_G
Probab=97.46 E-value=0.00015 Score=70.56 Aligned_cols=84 Identities=20% Similarity=0.324 Sum_probs=59.4
Q ss_pred ceeecccccccccccc-cccCCCcEEEeecCeeccCCCcccccccceeecccCcceeeeEEEEeeeccCCCCceeEeecc
Q psy12044 263 YLEIQEGKNVSLLCKV-SAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCVAEN 341 (767)
Q Consensus 263 ~~~v~~G~~vsL~C~a-~g~P~p~itW~~~g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~GtY~CvA~N 341 (767)
...+..|..+.|.|.+ .+.|.+.+.|.+++..+..............+ ......+.|.|.++..+|.|.|+|.|.|
T Consensus 116 ~~~~~~g~~~~l~C~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~L~i~~~~~~d~G~Y~C~a~n 192 (209)
T 1nbq_A 116 PSSATIGNRAVLTCSEQDGSPPSEYTWFKDGIVMPTNPKSTRAFSNSSY---VLNPTTGELVFDPLSASDTGEYSCEARN 192 (209)
T ss_dssp BSEEETTSCEEECCCCCSCBSCCEEEEEETTCCCCSCSSSSSSCTTCCC---CCCTTTCCEEESSCCGGGCCCEEEEEEC
T ss_pred ccceecCCEEEEEEeCCCCCCCceeEEEECCeeCCCccccceeeeccce---EEcCCcceEEEEeccccCCeEEEEEEeC
Confidence 3457789999999996 89999999999988766543321111000000 0111346799999999999999999999
Q ss_pred CCCCcccc
Q psy12044 342 QAGSTSSN 349 (767)
Q Consensus 342 ~~G~s~~s 349 (767)
..|....+
T Consensus 193 ~~g~~~~s 200 (209)
T 1nbq_A 193 GYGTPMTS 200 (209)
T ss_dssp SSSCCEEC
T ss_pred CcCccccc
Confidence 99988433
No 237
>2eny_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.46 E-value=0.00012 Score=64.45 Aligned_cols=73 Identities=22% Similarity=0.352 Sum_probs=53.6
Q ss_pred CCccceeecccccccccccccccCC-CcEEEeecCeeccCCCcccccccceeecccCcceeeeEEEEeeeccCCCCceeE
Q psy12044 259 PSTFYLEIQEGKNVSLLCKVSAIPE-AKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVC 337 (767)
Q Consensus 259 ~~~~~~~v~~G~~vsL~C~a~g~P~-p~itW~~~g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~GtY~C 337 (767)
.......+.+|+.+.|.|.+.+.+. +.+.|++++..+..... +.....+ ....|.|.++..+|.|.|+|
T Consensus 13 ~~~~~~~v~~G~~v~l~C~v~~~~~~~~v~W~k~g~~i~~~~r-------~~~~~~~---~~~~L~I~~v~~~D~G~Y~C 82 (104)
T 2eny_A 13 KRLKTMEVLEGESCSFECVLSHESASDPAMWTVGGKTVGSSSR-------FQATRQG---RKYILVVREAAPSDAGEVVF 82 (104)
T ss_dssp BCCCCEEEESSCCEEEEEECSSCCCSSCBCCBSSSSBCSBCSS-------CEEEEET---TEEEEEECSCCTTTCSCEEE
T ss_pred ecCCCcEEcCCCcEEEEEEEcCCCCCceeEEEECCEECCCCCC-------EEEEEcC---CEEEEEECCCCHHHCEEEEE
Confidence 3345678889999999999998875 48999999877653321 1111111 23579999999999999999
Q ss_pred eecc
Q psy12044 338 VAEN 341 (767)
Q Consensus 338 vA~N 341 (767)
.+.|
T Consensus 83 ~a~~ 86 (104)
T 2eny_A 83 SVRG 86 (104)
T ss_dssp EETT
T ss_pred EECC
Confidence 9865
No 238
>1itb_B Type 1 interleukin-1 receptor; immunoglobulin fold, transmembrane, glycoprotein, signal, complex (immunoglobulin/receptor); 2.50A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ira_Y* 4dep_B* 1g0y_R
Probab=97.45 E-value=0.00016 Score=75.68 Aligned_cols=89 Identities=21% Similarity=0.360 Sum_probs=66.1
Q ss_pred eeecccccccccccccccCCCcEEEeecCeeccCCCcccccccceeecccC----cceeeeEEEEeeeccCC-CCceeEe
Q psy12044 264 LEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEG----TEIKKSELLIYNSNIDD-NGTFVCV 338 (767)
Q Consensus 264 ~~v~~G~~vsL~C~a~g~P~p~itW~~~g~~l~~~s~~~~~~~~~~~~~~g----~~~~~s~L~I~nvs~sD-~GtY~Cv 338 (767)
..+..|..+.|.|.+.+.|.|.+.|.+++..+......... .......+ .....+.|.|.++..+| .|.|.|.
T Consensus 219 ~~~~~g~~v~l~C~~~g~P~p~i~W~~~g~~i~~~~~~~~~--~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~~G~Y~C~ 296 (315)
T 1itb_B 219 MEVDLGSQIQLICNVTGQLSDIAYWKWNGSVIDEDDPVLGE--DYYSVENPANKRRSTLITVLNISEIESRFYKHPFTCF 296 (315)
T ss_dssp EECCSSSCEEEEEEEEECTTSEEEEEETTEECCTTCSSEEE--EEEEECCSSCGGGEEEEEEEEESSCCGGGGTSCEEEE
T ss_pred EEEeCCCcEEEEEEEecCCCCeeEEEECCEECCcccccccc--cceeeeccCCCceeEEEEEEEEeecCHHHcCCceEEE
Confidence 46789999999999999999999999998877654321111 01111111 12345689999999999 9999999
Q ss_pred eccCCCCcccceEEEE
Q psy12044 339 AENQAGSTSSNYTIRI 354 (767)
Q Consensus 339 A~N~~G~s~~s~sL~V 354 (767)
|.|..|.....+.+.+
T Consensus 297 a~N~~G~~~~~~~l~v 312 (315)
T 1itb_B 297 AKNTHGIDAAYIQLIY 312 (315)
T ss_dssp EECTTCCEEEEEEEEC
T ss_pred EecCCCceeEEEEEEe
Confidence 9999999887776654
No 239
>2iep_A Muscle-specific kinase receptor; beta-sandwich, signaling protein,transferase; 2.21A {Rattus norvegicus}
Probab=97.45 E-value=7.1e-05 Score=72.14 Aligned_cols=83 Identities=23% Similarity=0.447 Sum_probs=62.5
Q ss_pred ccceeecccccccccccccccCCCcEEEeecCeeccCCCcccccccceeecccCcceeeeEEEEeeeccCCCCceeEeec
Q psy12044 261 TFYLEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCVAE 340 (767)
Q Consensus 261 ~~~~~v~~G~~vsL~C~a~g~P~p~itW~~~g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~GtY~CvA~ 340 (767)
.....+..|..+.|.|.+.+.|.+.+.|.+++..+..... +.... .+.|.|.++...|.|.|.|.+.
T Consensus 107 ~~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~~~~~~~~~~-------~~~~~------~~~L~i~~~~~~d~G~Y~C~a~ 173 (192)
T 2iep_A 107 PINVKIIEGLKAVLPCTTMGNPKPSVSWIKGDSALRENSR-------IAVLE------SGSLRIHNVQKEDAGQYRCVAK 173 (192)
T ss_dssp CCCEEEETTSCEEECCEEEEESCCEEEEEETTEECCCCSS-------EEECT------TSCEEESSCCGGGCEEEEEEEE
T ss_pred CcceEEeCCCcEEEEEEEeccCCceEEEEeCCEEccCCCc-------EEEec------CCcEEEecCChhhCEEEEEEEE
Confidence 3345677899999999999999999999998877654321 11111 2369999999999999999999
Q ss_pred cCCCCcc-cceEEEEEe
Q psy12044 341 NQAGSTS-SNYTIRIVL 356 (767)
Q Consensus 341 N~~G~s~-~s~sL~V~~ 356 (767)
|..|... ..+.+.|..
T Consensus 174 n~~g~~~s~~~~l~V~~ 190 (192)
T 2iep_A 174 NSLGTAYSKLVKLEVEV 190 (192)
T ss_dssp ETTEEEECCCEEEEEEC
T ss_pred cCCCcEEEEEEEEEEEe
Confidence 9998774 346555543
No 240
>2yd1_A Tyrosine-protein phosphatase LAR; hydrolase; 1.80A {Drosophila melanogaster} PDB: 3pxj_A
Probab=97.43 E-value=0.00017 Score=71.07 Aligned_cols=92 Identities=24% Similarity=0.312 Sum_probs=66.5
Q ss_pred CCCCccceeecccccccccccccccCCCcEEEeecCeeccCCCcccccccceeecccCcceeeeEEEEeeecc-CCCCce
Q psy12044 257 ITPSTFYLEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNI-DDNGTF 335 (767)
Q Consensus 257 i~~~~~~~~v~~G~~vsL~C~a~g~P~p~itW~~~g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~-sD~GtY 335 (767)
+...+....+.+|+.+.|.|.+.+.|.+.+.|.+++..+..... + +..... ......|.|.++.. .|.|.|
T Consensus 9 ~~~~p~~~~v~~G~~v~l~C~~~g~p~~~v~W~~~~~~~~~~~~-----~-~~~~~~--~~~~~~L~i~~v~~~~d~G~Y 80 (212)
T 2yd1_A 9 IIRKPQNQGVRVGGVASFYCAARGDPPPSIVWRKNGKKVSGTQS-----R-YTVLEQ--PGGISILRIEPVRAGRDDAPY 80 (212)
T ss_dssp EEECCCCEEEETTSCEEEEEEEECSSCCEEEEEETTEECCTTST-----T-EEEEEE--TTTEEEEEESSCCTTTTCSEE
T ss_pred EEcCCCceEEecCCEEEEEEEEccCCCCeEEEEECCEECCCCcc-----e-eEEEEc--CCCeEEEEEEecCCCCcCceE
Confidence 33344556788999999999999999999999998877642110 0 111110 11236899999999 999999
Q ss_pred eEeeccCCCC-cccceEEEEEe
Q psy12044 336 VCVAENQAGS-TSSNYTIRIVL 356 (767)
Q Consensus 336 ~CvA~N~~G~-s~~s~sL~V~~ 356 (767)
.|.+.|..|. ....+.+.|..
T Consensus 81 ~C~~~n~~g~~~~~~~~l~V~~ 102 (212)
T 2yd1_A 81 ECVAENGVGDAVSADATLTIYE 102 (212)
T ss_dssp EEEEECSSSCEEEEEEEEEEEC
T ss_pred EEEEEeCCCCeEEeeEEEEEec
Confidence 9999999887 55666666654
No 241
>2yd6_A PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sapiens} PDB: 2yd7_A 2yd2_A 2yd3_A 2yd4_A* 2yd8_A* 2yd5_A* 3pxh_A
Probab=97.43 E-value=8.3e-05 Score=73.48 Aligned_cols=91 Identities=23% Similarity=0.354 Sum_probs=66.6
Q ss_pred CCCCccceeecccccccccccccccCCCcEEEeecCeeccCCCcccccccceeecccCcceeeeEEEEeee-ccCCCCce
Q psy12044 257 ITPSTFYLEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNS-NIDDNGTF 335 (767)
Q Consensus 257 i~~~~~~~~v~~G~~vsL~C~a~g~P~p~itW~~~g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nv-s~sD~GtY 335 (767)
+...+....+.+|+.+.|.|.+.+.|.+.+.|.+++..+...... ..... ......|.|.++ ...|.|.|
T Consensus 9 ~~~~p~~~~v~~G~~v~L~C~~~g~p~~~v~W~k~~~~~~~~~~~------~~~~~---~~~~~~L~i~~v~~~~d~G~Y 79 (212)
T 2yd6_A 9 FTRTPVDQTGVSGGVASFICQATGDPRPKIVWNKKGKKVSNQRFE------VIEFD---DGSGSVLRIQPLRTPRDEAIY 79 (212)
T ss_dssp EEECCCCEEEETTSCEEEEEEEEEESCCEEEEEETTEECCCTTEE------EEEEG---GGTEEEEEECSCCTTTTCEEE
T ss_pred EEeCcceeEEecCCeEEEEEEEeeCCCCEEEEEECCcCCCCCcee------EEEEc---CCCceEEEEeccCCCCCCeEE
Confidence 333344567889999999999999999999999988776543211 00000 112467999999 59999999
Q ss_pred eEeeccCCCCcccceEEEEEe
Q psy12044 336 VCVAENQAGSTSSNYTIRIVL 356 (767)
Q Consensus 336 ~CvA~N~~G~s~~s~sL~V~~ 356 (767)
.|.+.|..|.....+.+.|..
T Consensus 80 ~C~a~n~~g~~~~~~~l~V~~ 100 (212)
T 2yd6_A 80 ECVASNNVGEISVSTRLTVLR 100 (212)
T ss_dssp EEEEEETTEEEEEEEEEEEEC
T ss_pred EEEEEcCCCcEEEEEEEEEec
Confidence 999999988876666666654
No 242
>2a38_A Titin; Z1Z2, structural protein; 2.00A {Homo sapiens} PDB: 1ya5_A 2f8v_A
Probab=97.42 E-value=0.00012 Score=70.67 Aligned_cols=90 Identities=18% Similarity=0.309 Sum_probs=66.6
Q ss_pred CCccceeecccccccccccccccCCCcEEEeecCeeccCCCcccccccceeecccCcceeeeEEEEeeeccCCCCceeEe
Q psy12044 259 PSTFYLEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCV 338 (767)
Q Consensus 259 ~~~~~~~v~~G~~vsL~C~a~g~P~p~itW~~~g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~GtY~Cv 338 (767)
..+....+.+|+.+.|.|.+.+.|.+.+.|.+++..+...... .+.... ......|.|.++...|.|.|.|.
T Consensus 10 ~~~~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~-----~~~~~~---~~~~~~L~i~~~~~~d~G~Y~C~ 81 (194)
T 2a38_A 10 QPLQSVVVLEGSTATFEAHISGFPVPEVSWFRDGQVISTSTLP-----GVQISF---SDGRAKLTIPAVTKANSGRYSLK 81 (194)
T ss_dssp ECCCCEEEETTSCEEEEEEEEEESCCEEEEEESSSBCCTTTST-----TCEEEE---ETTEEEEEESSCCGGGCEEEEEE
T ss_pred ccCCceEEECCCEEEEEEEEEecCCCEEEEEECCEEcccccCC-----ceEEEe---CCCEEEEEECCCCcccCEEEEEE
Confidence 3344567889999999999999999999999988766443211 011110 12246899999999999999999
Q ss_pred eccCCCCcccceEEEEEe
Q psy12044 339 AENQAGSTSSNYTIRIVL 356 (767)
Q Consensus 339 A~N~~G~s~~s~sL~V~~ 356 (767)
+.|..|.....+.+.|..
T Consensus 82 ~~n~~~~~~~~~~l~v~~ 99 (194)
T 2a38_A 82 ATNGSGQATSTAELLVKA 99 (194)
T ss_dssp EEETTEEEEEEEEEEEEC
T ss_pred EEcCCceEeEEEEEEEcc
Confidence 999988877766666653
No 243
>3lcy_A Titin; A-BAND, IG tandem domains, ATP-binding, calmodulin-BI cardiomyopathy, disease mutation, disulfide bond, immunoglo domain, isopeptide bond; 2.50A {Homo sapiens}
Probab=97.42 E-value=0.00012 Score=70.61 Aligned_cols=91 Identities=16% Similarity=0.344 Sum_probs=67.6
Q ss_pred CCCCccceeecccccccccccccccCCCcEEEeecCeeccCCCcccccccceeecccCcceeeeEEEEeeeccCCCCcee
Q psy12044 257 ITPSTFYLEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFV 336 (767)
Q Consensus 257 i~~~~~~~~v~~G~~vsL~C~a~g~P~p~itW~~~g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~GtY~ 336 (767)
+........+..|+.+.|.|.+.+.|.+.+.|.+++..+...... ..... .....|.|.++...|.|.|.
T Consensus 10 ~~~~~~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~-------~~~~~---~~~~~L~i~~~~~~d~G~Y~ 79 (197)
T 3lcy_A 10 IRKEMKDVTTKLGEAAQLSCQIVGRPLPDIKWYRFGKELIQSRKY-------KMSSD---GRTHTLTVMTEEQEDEGVYT 79 (197)
T ss_dssp EEECCCCEEEETTSEEEEEEEEEEESCCEEEEEETTEEECCCSSE-------EEEES---SSEEEEEEECCSGGGCEEEE
T ss_pred ccccCCceEEeCCCcEEEEEEEecCCCCEEEEEECCEECCCCccE-------EEEeC---CCEEEEEEecCCccCCEEEE
Confidence 333444667889999999999999999999999988776432211 11111 12357999999999999999
Q ss_pred EeeccCCCCcccceEEEEEee
Q psy12044 337 CVAENQAGSTSSNYTIRIVLK 357 (767)
Q Consensus 337 CvA~N~~G~s~~s~sL~V~~~ 357 (767)
|.+.|..|.....+.+.+...
T Consensus 80 C~~~n~~~~~~~~~~l~v~~~ 100 (197)
T 3lcy_A 80 CIATNEVGEVETSSKLLLQAT 100 (197)
T ss_dssp EEEECSSCEEEEEEEEEEEEE
T ss_pred EEEECCCCceeEEEEEEEEcC
Confidence 999999888777777666543
No 244
>2v44_A NCAM2, neural cell adhesion molecule 2; phosphorylation, immunoglobulin domain, IG, membrane, homphilic, glycoprotein, transmembrane; 1.77A {Homo sapiens} PDB: 2xy2_A* 2vaj_A
Probab=97.42 E-value=0.0001 Score=71.09 Aligned_cols=83 Identities=22% Similarity=0.418 Sum_probs=59.6
Q ss_pred cceeecccccccccccccccCCCcEEEeecCeeccCCCcccccccceeecccCcceeeeEEEEeeeccCCCCceeEeecc
Q psy12044 262 FYLEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCVAEN 341 (767)
Q Consensus 262 ~~~~v~~G~~vsL~C~a~g~P~p~itW~~~g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~GtY~CvA~N 341 (767)
....+..|..+.|.|.+.+.|.+.+.|.+++..+..... ..+... ..+.|.|.++..+|.|.|+|.|.|
T Consensus 104 ~~~~~~~g~~~~l~C~~~g~p~p~v~W~~~~~~~~~~~~-----~~~~~~------~~~~L~i~~v~~~d~G~Y~C~a~n 172 (189)
T 2v44_A 104 SPQEFKQGEDAEVVCRVSSSPAPAVSWLYHNEEVTTISD-----NRFAML------ANNNLQILNINKSDEGIYRCEGRV 172 (189)
T ss_dssp CSEEEETTSCEEECCEEECSSCCEEEEEEEC--CEECCC-----TTEEEC------TTSCEEETTCCGGGCEEEEEEEEE
T ss_pred CcEEEeCCCCEEEEEEECcCCCCcEEEEECCcEEeccCC-----CCEEEe------cCCcEEEEEcCcccCeEEEEEEEc
Confidence 345678899999999999999999999998766532110 011111 123799999999999999999999
Q ss_pred CCCCcccceEEEEE
Q psy12044 342 QAGSTSSNYTIRIV 355 (767)
Q Consensus 342 ~~G~s~~s~sL~V~ 355 (767)
..|.......+.+.
T Consensus 173 ~~~~~~~~~~~~v~ 186 (189)
T 2v44_A 173 EARGEIDFRDIIVI 186 (189)
T ss_dssp TTTTEEEEEEEEEE
T ss_pred cccCceeeeeEEEE
Confidence 98776655555443
No 245
>4gos_A V-SET domain-containing T-cell activation inhibit; immunoglobulin domain, glycoprotein, disulfide bond, immunit adaptive immunity; HET: NAG BMA MAN; 1.59A {Homo sapiens}
Probab=97.42 E-value=0.00017 Score=65.88 Aligned_cols=95 Identities=18% Similarity=0.261 Sum_probs=60.4
Q ss_pred CccceeecccccccccccccccCC---CcEEEeecCee--cc---CC-----CcccccccceeecccCcceeeeEEEEee
Q psy12044 260 STFYLEIQEGKNVSLLCKVSAIPE---AKITWLFDGVP--IQ---NE-----SMSASESHAVYSTEEGTEIKKSELLIYN 326 (767)
Q Consensus 260 ~~~~~~v~~G~~vsL~C~a~g~P~---p~itW~~~g~~--l~---~~-----s~~~~~~~~~~~~~~g~~~~~s~L~I~n 326 (767)
.........|+.++|.|....... ..+.|.+.+.. +. .. ........+..+..........+|.|.+
T Consensus 11 ~~~~v~g~vG~~v~L~C~~~~~~~~~~~~V~W~k~~~~~~v~~~~~g~~~~~~~~~~~~~R~~~~~~~~~~g~~sL~I~~ 90 (125)
T 4gos_A 11 TTVASAGNIGEDGILSCTFEPDIKLSDIVIQWLKEGVLGLVHEFKEGKDELSEQDEMFRGRTAVFADQVIVGNASLRLKN 90 (125)
T ss_dssp EEECEEEETTSCEEEEEEECCCSCGGGCEEEEEETTCSSBSEEEETTEECCTTBCGGGTTCEEECTTTGGGTBCCEEESS
T ss_pred cCceEEEeCCCCEEEEEEEcCCcccCcEEEEEEEeccCceEEEEEeecccccccCccccceEEEecCCccCCeEEEEECC
Confidence 344556778999999998764433 36899884321 10 00 0001111123333333344467899999
Q ss_pred eccCCCCceeEeeccCCCCcccceEEEE
Q psy12044 327 SNIDDNGTFVCVAENQAGSTSSNYTIRI 354 (767)
Q Consensus 327 vs~sD~GtY~CvA~N~~G~s~~s~sL~V 354 (767)
++.+|.|.|.|.+.+..|...+.+.|.|
T Consensus 91 v~~~D~G~Y~C~v~~~~g~~~~~v~LkV 118 (125)
T 4gos_A 91 VQLTDAGTYKCYIITSKGKGNANLEYKT 118 (125)
T ss_dssp CCGGGCEEEEEEEEETTEEEEEEEEEEE
T ss_pred CChHHCEEEEEEEEeCCCeEEEEEEEEE
Confidence 9999999999999998887766665554
No 246
>2o26_X MAST/stem cell growth factor receptor; stem cell factor, receptor tyrosine kinase, class III, recep ligand complex, cytokine, 4-helix bundle; HET: NAG FUL MAN NDG; 2.50A {Mus musculus}
Probab=97.42 E-value=0.0001 Score=76.41 Aligned_cols=96 Identities=19% Similarity=0.378 Sum_probs=65.0
Q ss_pred CCCCCccceeecccccccccccccccCCCc-EEEeecCeeccCCCcccccccceeecccCcceeeeEEEEeeeccCCCCc
Q psy12044 256 QITPSTFYLEIQEGKNVSLLCKVSAIPEAK-ITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGT 334 (767)
Q Consensus 256 ~i~~~~~~~~v~~G~~vsL~C~a~g~P~p~-itW~~~g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~Gt 334 (767)
.+........+..|+.+.|.|.+.+.|.|. +.|.+++..+...... ...............+.|.|.++...|.|.
T Consensus 190 ~i~~~~~~~~v~~G~~v~l~C~~~g~p~p~~i~W~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~L~I~~v~~~d~G~ 266 (290)
T 2o26_X 190 VVSVPETSHLLKKGDTFTVVCTIKDVSTSVNSMWLKMNPQPQHIAQV---KHNSWHRGDFNYERQETLTISSARVDDSGV 266 (290)
T ss_dssp EEECSCSBCCCCTTCCEEEEEEEEESSTTCEEEEEEESSSEEECCCE---ECCEEEEETTEEEEEEEEEESSCCSSSCEE
T ss_pred ccccCCCcceEecCCcEEEEEEEecCCcceeEEEecCCCCCccceee---cccccccCceeeEEEEEEEEcCCCcccCeE
Confidence 333333445778999999999999999996 9999987653200000 000011111123445789999999999999
Q ss_pred eeEeeccCCCCcccceEEEE
Q psy12044 335 FVCVAENQAGSTSSNYTIRI 354 (767)
Q Consensus 335 Y~CvA~N~~G~s~~s~sL~V 354 (767)
|.|.|.|..|.....+.+.|
T Consensus 267 Y~C~a~N~~g~~~~~~~l~V 286 (290)
T 2o26_X 267 FMCYANNTFGSANVTTTLKV 286 (290)
T ss_dssp EEEEEECSSCEEEEEEEECC
T ss_pred EEEEEeCCCCcEEEEEEEEE
Confidence 99999999998866655544
No 247
>1pd6_A Cardiac MYBP-C;, myosin-binding protein C, cardiac-type, domain C2; IG domain, structural protein; NMR {Homo sapiens} SCOP: b.1.1.4
Probab=97.40 E-value=0.00025 Score=62.48 Aligned_cols=68 Identities=24% Similarity=0.457 Sum_probs=50.9
Q ss_pred eeecccccccccccccccCCCcEEEeecCeeccCCCcccccccceeecccCcceeeeEEEEeeeccCCCCceeEeecc
Q psy12044 264 LEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCVAEN 341 (767)
Q Consensus 264 ~~v~~G~~vsL~C~a~g~P~p~itW~~~g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~GtY~CvA~N 341 (767)
..+..|+.+.|.|.+ +.|.+.+.|++++..+.... ..+.....+ ....|.|.++..+|.|.|.|.+.+
T Consensus 26 ~~v~~G~~v~L~C~~-~~p~~~v~W~k~g~~l~~~~------~~~~~~~~~---~~~~L~I~~v~~~D~G~Y~C~a~~ 93 (104)
T 1pd6_A 26 YQVSKGHKIRLTVEL-ADHDAEVKWLKNGQEIQMSG------SKYIFESIG---AKRTLTISQCSLADDAAYQCVVGG 93 (104)
T ss_dssp EEEETTSCEEEEEEC-SSSSSCCEEEESSSEECCCS------SSSEEEEET---TEEEEEECSCSSSSCEEEEEEETT
T ss_pred EEEecCCCEEEEEEE-cCCCCEEEEEECCEECCCCC------CeEEEEecC---CEEEEEECCCCcccCEEEEEEECC
Confidence 578899999999999 78899999999987765430 011111111 134799999999999999999954
No 248
>1qz1_A Neural cell adhesion molecule 1, 140 kDa isoform; IG modules, NCAM; 2.00A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ie5_A
Probab=97.39 E-value=9.5e-05 Score=76.34 Aligned_cols=85 Identities=31% Similarity=0.590 Sum_probs=64.1
Q ss_pred ceeecccccccccccccccCCCcEEEeecCeeccCCCcccccccceeecccCcceeeeEEEEeeeccCCCCceeEeeccC
Q psy12044 263 YLEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCVAENQ 342 (767)
Q Consensus 263 ~~~v~~G~~vsL~C~a~g~P~p~itW~~~g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~GtY~CvA~N~ 342 (767)
...+..|..+.|.|.+.+.|.|.+.|.+++..+....... ..+... ...+.|.|.++..+|.|.|.|.|.|.
T Consensus 205 ~~~~~~g~~v~l~C~~~g~p~p~i~W~~~g~~~~~~~~~~---~~~~~~-----~~~~~L~i~~v~~~d~G~Y~C~a~N~ 276 (291)
T 1qz1_A 205 NATANLGQSVTLVCDADGFPEPTMSWTKDGEPIENEEEDD---EKHIFS-----DDSSELTIRNVDKNDEAEYVCIAENK 276 (291)
T ss_dssp EEETTSCCCEEEEEEEEEESCCEEEEEETTEECCCC--CC---SSEEEC-----TTSCEEEECSCCGGGCEEEEEEEEET
T ss_pred ccccccCceEEEEEEEEEeCCCcEEEEECCEECcCCCCCC---cceEEc-----CCCcEEEEEecChhcCEEEEEEEEeC
Confidence 3467789999999999999999999999988765432110 011111 12357999999999999999999999
Q ss_pred CCCcccceEEEEE
Q psy12044 343 AGSTSSNYTIRIV 355 (767)
Q Consensus 343 ~G~s~~s~sL~V~ 355 (767)
.|.....+.+.|.
T Consensus 277 ~G~~~~~~~l~V~ 289 (291)
T 1qz1_A 277 AGEQDASIHLKVF 289 (291)
T ss_dssp TEEEEEEEEEEEE
T ss_pred CCceEEEEEEEEE
Confidence 9988777776664
No 249
>2wim_A N-CAM 2, NCAM2, neural cell adhesion molecule 2; cell membrane, transmembrane, immunoglobulin; HET: NDG NAG; 3.00A {Homo sapiens}
Probab=97.39 E-value=0.00015 Score=74.74 Aligned_cols=82 Identities=24% Similarity=0.475 Sum_probs=63.8
Q ss_pred ceeecccccccccccccccCCCcEEEeecCeeccCCCcccccccceeecccCcceeeeEEEEeeeccCCCCceeEeeccC
Q psy12044 263 YLEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCVAENQ 342 (767)
Q Consensus 263 ~~~v~~G~~vsL~C~a~g~P~p~itW~~~g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~GtY~CvA~N~ 342 (767)
...+..|..+.|.|.+.+.|.+.+.|.+++..+...... ... .....|.|.++...|.|.|.|.|.|.
T Consensus 203 ~~~~~~g~~~~l~C~~~g~p~p~v~W~~~g~~~~~~~~~-------~~~-----~~~~~L~i~~~~~~d~G~Y~C~a~N~ 270 (291)
T 2wim_A 203 NATAERGEEMTFSCRASGSPEPAISWFRNGKLIEENEKY-------ILK-----GSNTELTVRNIINSDGGPYVCRATNK 270 (291)
T ss_dssp ECCSSSCCEEEEECBCCCBSCCEEEEEETTEECCCTTTE-------EEC-----STTCEEEEESCCSTTCEEEEEEEEET
T ss_pred cceecCCCeEEEEEEeecCCCCeEEEEECCEECcCCccE-------EEc-----CCccEEEEeeCCcccCEEEEEEEEEC
Confidence 345678999999999999999999999998776543211 111 11357999999999999999999999
Q ss_pred CCCcccceEEEEEe
Q psy12044 343 AGSTSSNYTIRIVL 356 (767)
Q Consensus 343 ~G~s~~s~sL~V~~ 356 (767)
.|...+.+.+.+..
T Consensus 271 ~G~~~~~~~l~v~~ 284 (291)
T 2wim_A 271 AGEDEKQAFLQVFV 284 (291)
T ss_dssp TEEEEEEEEEEC--
T ss_pred CCceeeeEEEEEEE
Confidence 99988877776654
No 250
>2v9r_A Roundabout homolog 1; proto-oncogene, differentiation, phosphorylation, disease MU neuronal development, immunoglobulin domain, chemotaxis; 2.00A {Homo sapiens} PDB: 2v9q_A
Probab=97.38 E-value=0.00019 Score=70.10 Aligned_cols=82 Identities=24% Similarity=0.513 Sum_probs=62.5
Q ss_pred cceeecccccccccccc-cccCCCcEEEeecCeeccCCCcccccccceeecccCcceeeeEEEEeeeccCCCCceeEeec
Q psy12044 262 FYLEIQEGKNVSLLCKV-SAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCVAE 340 (767)
Q Consensus 262 ~~~~v~~G~~vsL~C~a-~g~P~p~itW~~~g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~GtY~CvA~ 340 (767)
....+..|..+.|.|.+ .+.|.+.+.|.+++..+...... .. ...+.|.|.++..+|.|.|.|.+.
T Consensus 119 ~~~~~~~g~~~~l~C~~~~~~p~~~v~W~~~~~~l~~~~~~------~~-------~~~~~L~i~~~~~~d~G~Y~C~a~ 185 (212)
T 2v9r_A 119 SDVMVAVGEPAVMECQPPRGHPEPTISWKKDGSPLDDKDER------IT-------IRGGKLMITYTRKSDAGKYVCVGT 185 (212)
T ss_dssp CCEEEETTSCEEEECBCCCEESCCEEEEEETTEEECTTSTT------EE-------EETTEEEESSCCGGGCEEEEEEEE
T ss_pred CceEecCCCcEEEEEecCCCCCCCEEEEEECCccCCCCcce------EE-------ccCCeEEEeeCCHhhCeeEEEEEe
Confidence 34567889999999998 89999999999988776532211 11 123479999999999999999999
Q ss_pred cCCCCcccc-eEEEEEe
Q psy12044 341 NQAGSTSSN-YTIRIVL 356 (767)
Q Consensus 341 N~~G~s~~s-~sL~V~~ 356 (767)
|..|...+. +.+.|..
T Consensus 186 N~~g~~~s~~~~l~V~~ 202 (212)
T 2v9r_A 186 NMVGERESEVAELTVLE 202 (212)
T ss_dssp ETTEEEECCCEEEEEEC
T ss_pred cccCceecceEEEEEEe
Confidence 999876553 5666543
No 251
>1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB: 2om5_A
Probab=97.37 E-value=8.8e-05 Score=80.08 Aligned_cols=79 Identities=25% Similarity=0.481 Sum_probs=63.3
Q ss_pred ceeecccccccccccccccCCCcEEEeecCeeccCCCcccccccceeecccCcceeeeEEEEeeeccCCCCceeEeeccC
Q psy12044 263 YLEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCVAENQ 342 (767)
Q Consensus 263 ~~~v~~G~~vsL~C~a~g~P~p~itW~~~g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~GtY~CvA~N~ 342 (767)
...+..|..+.|.|.+.+.|.+.+.|.+++..+...... .. ..+.|.|.++...|.|.|.|.|.|.
T Consensus 303 ~~~~~~g~~~~l~C~~~g~p~p~v~W~~~g~~~~~~~~~-------~~-------~~~~L~i~~v~~~d~G~Y~C~a~N~ 368 (382)
T 1cs6_A 303 DTEADIGSDLRWSCVASGKPRPAVRWLRDGQPLASQNRI-------EV-------SGGELRFSKLVLEDSGMYQCVAENK 368 (382)
T ss_dssp CEEEETTCCEEEECEEEEESCCEEEEEETTEECCCCSSE-------EE-------ETTEEEESSCCGGGCEEEEEEEEET
T ss_pred ccEEcCCCeEEEEEEeeeecCCEEEEEECCEECCCCceE-------EE-------ECCEEEECcCCcccCEEEEEEEEeC
Confidence 456778999999999999999999999998776543211 11 1347999999999999999999999
Q ss_pred CCCcccceEEEEE
Q psy12044 343 AGSTSSNYTIRIV 355 (767)
Q Consensus 343 ~G~s~~s~sL~V~ 355 (767)
.|.....+.+.|.
T Consensus 369 ~G~~~~~~~l~V~ 381 (382)
T 1cs6_A 369 HGTVYASAELTVQ 381 (382)
T ss_dssp TEEEEEEEEEEEE
T ss_pred CCeEEEEEEEEEe
Confidence 9998877766653
No 252
>1f97_A Junction adhesion molecule; immunoglobulin superfamily, beta-sandwich fold, cell adhesion; 2.50A {Mus musculus} SCOP: b.1.1.1 b.1.1.4
Probab=97.37 E-value=0.00018 Score=70.22 Aligned_cols=90 Identities=18% Similarity=0.330 Sum_probs=60.7
Q ss_pred eeeccccccccccc-ccccCCCcEEEeecCe-eccCCCcccccccceeecccCcceeeeEEEEeeeccCCCCceeEeecc
Q psy12044 264 LEIQEGKNVSLLCK-VSAIPEAKITWLFDGV-PIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCVAEN 341 (767)
Q Consensus 264 ~~v~~G~~vsL~C~-a~g~P~p~itW~~~g~-~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~GtY~CvA~N 341 (767)
..+..|..+.|.|. +.+.|.+.+.|.+++. .+..............+. .....+.|.|.++..+|.|.|.|.|.|
T Consensus 114 ~~~~~g~~~~l~C~~~~~~p~~~i~W~~~~~~~l~~~~~~~~~~~~~~~~---~~~~~~~L~i~~~~~~d~G~Y~C~a~n 190 (212)
T 1f97_A 114 SSVTIGNRAVLTCSEHDGSPPSEYSWFKDGISMLTADAKKTRAFMNSSFT---IDPKSGDLIFDPVTAFDSGEYYCQAQN 190 (212)
T ss_dssp SEEETTSCEEEEEECSCCBSCCEEEEEETTEESBC-----CBSCSSSCEE---ECTTTCCEEESSCCGGGCEEEEEEEEC
T ss_pred cccCCCCeEEEEEEcccCcCCCEEEEEeCCcccccccccccccccCceeE---ecCCCceEEEEecChhhCcEEEEEEcc
Confidence 45778999999999 7999999999999987 665433211110000000 011245799999999999999999999
Q ss_pred CCCCcccceEEEEEe
Q psy12044 342 QAGSTSSNYTIRIVL 356 (767)
Q Consensus 342 ~~G~s~~s~sL~V~~ 356 (767)
..|....+..+.+.+
T Consensus 191 ~~g~~~~s~~~~l~V 205 (212)
T 1f97_A 191 GYGTAMRSEAAHMDA 205 (212)
T ss_dssp SSSCCEECCCEEEEE
T ss_pred ccCCccccceEEEEE
Confidence 999884444444443
No 253
>3ojm_B Fibroblast growth factor receptor 2; beta trefoil motif, immunoglobulin-like domain, growth facto factor receptor, extracellular; 2.10A {Homo sapiens} PDB: 1nun_B* 3oj2_C 2fdb_P 1iil_E 1ev2_E 1e0o_B* 1ii4_E 1djs_A 3ojv_C* 1cvs_C 1fq9_C* 1evt_C
Probab=97.36 E-value=0.00014 Score=72.03 Aligned_cols=87 Identities=21% Similarity=0.414 Sum_probs=65.3
Q ss_pred cceeecccccccccccccccCCCcEEEeecCeeccCCCcccccccceeecccCcceeeeEEEEeeeccCCCCceeEeecc
Q psy12044 262 FYLEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCVAEN 341 (767)
Q Consensus 262 ~~~~v~~G~~vsL~C~a~g~P~p~itW~~~g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~GtY~CvA~N 341 (767)
....+.+|+.+.|.|.+.+.|.+.+.|.+++..+........ . ........|.|.++...|.|.|.|.+.|
T Consensus 27 ~~~~v~~G~~v~L~C~~~~~p~~~v~W~~~~~~~~~~~~~~~----~-----~~~~~~~~L~i~~~~~~d~G~Y~C~~~n 97 (231)
T 3ojm_B 27 RLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGG----Y-----KVRNQHWSLIMESVVPSDKGNYTCVVEN 97 (231)
T ss_dssp SCEEEETTSCEEEECCEEEESCCEEEEEETTEECCGGGSTTC----C-----EEEGGGTEEEECSCCGGGCEEEEEEEEE
T ss_pred eeEEEccCCCEEEEEecccCCCCeEEEEECCccccccccccc----e-----eeecCcceEEEecCCcccCEEEEEEEec
Confidence 345678999999999999999999999998877643221100 0 0111235799999999999999999999
Q ss_pred CCCCcccceEEEEEee
Q psy12044 342 QAGSTSSNYTIRIVLK 357 (767)
Q Consensus 342 ~~G~s~~s~sL~V~~~ 357 (767)
..|.....+.+.|...
T Consensus 98 ~~~~~~~~~~l~V~~~ 113 (231)
T 3ojm_B 98 EYGSINHTYHLDVVER 113 (231)
T ss_dssp TTEEEEEEEEEEEECC
T ss_pred ccCcccccEEEEEEcC
Confidence 9888777777766643
No 254
>3ojm_B Fibroblast growth factor receptor 2; beta trefoil motif, immunoglobulin-like domain, growth facto factor receptor, extracellular; 2.10A {Homo sapiens} PDB: 1nun_B* 3oj2_C 2fdb_P 1iil_E 1ev2_E 1e0o_B* 1ii4_E 1djs_A 3ojv_C* 1cvs_C 1fq9_C* 1evt_C
Probab=97.36 E-value=0.00024 Score=70.37 Aligned_cols=94 Identities=18% Similarity=0.348 Sum_probs=66.0
Q ss_pred cceeecccccccccccccccCCCcEEEee----cCeeccCCCcccccccceeecccCcceeeeEEEEeeeccCCCCceeE
Q psy12044 262 FYLEIQEGKNVSLLCKVSAIPEAKITWLF----DGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVC 337 (767)
Q Consensus 262 ~~~~v~~G~~vsL~C~a~g~P~p~itW~~----~g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~GtY~C 337 (767)
....+..|..+.|.|.+.+.|.+.+.|.+ ++..+........ .............+.|.|.++...|.|.|+|
T Consensus 126 ~~~~~~~g~~~~l~C~~~~~p~p~v~W~~~~~~~g~~~~~~~~~~~---~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C 202 (231)
T 3ojm_B 126 ANASTVVGGDVEFVCKVYSDAQPHIQWIKHVEKNGSKYGPDGLPYL---KVLKHSGINSSNAEVLALFNVTEADAGEYIC 202 (231)
T ss_dssp CCEEEETTCCEEEECCEECSSCCEEEEEEECCBTTBSBCTTSCBCE---EEEEECSTTCSCTTEEEECSCCGGGCEEEEE
T ss_pred CceEEEeCCcEEEEEEEecCCCCEEEEEECCCCCCccccCCCcceE---eEecccccccCCccEEEEecCCHHHCeEEEE
Confidence 34567789999999999999999999998 5554432221100 0000011112234579999999999999999
Q ss_pred eeccCCCCcccceEEEEEeec
Q psy12044 338 VAENQAGSTSSNYTIRIVLKE 358 (767)
Q Consensus 338 vA~N~~G~s~~s~sL~V~~~~ 358 (767)
.+.|..|.....+.+.|..++
T Consensus 203 ~a~n~~g~~~~~~~l~V~~~p 223 (231)
T 3ojm_B 203 KVSNYIGQANQSAWLTVLPKQ 223 (231)
T ss_dssp EEEETTEEEEEEEEEEEECCC
T ss_pred EEEeccceEeeEEEEEEecCC
Confidence 999999998777777776543
No 255
>2vr9_A Roundabout 1, ROBO; immunoglobulin-like domain, AXON guidance, cell adhesion, immunoglobulin domain; 3.2A {Drosophila melanogaster} PDB: 2vra_A*
Probab=97.35 E-value=0.0003 Score=69.28 Aligned_cols=88 Identities=31% Similarity=0.525 Sum_probs=63.4
Q ss_pred cceeecccccccccccc-cccCCCcEEEeecCeeccCCCccccc-ccceeecccCcceeeeEEEEeeeccCCCCceeEee
Q psy12044 262 FYLEIQEGKNVSLLCKV-SAIPEAKITWLFDGVPIQNESMSASE-SHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCVA 339 (767)
Q Consensus 262 ~~~~v~~G~~vsL~C~a-~g~P~p~itW~~~g~~l~~~s~~~~~-~~~~~~~~~g~~~~~s~L~I~nvs~sD~GtY~CvA 339 (767)
....+..|..+.|.|.+ .+.|.+.+.|.+++..+......... ...... ...+.|.|.++..+|.|.|+|.|
T Consensus 116 ~~~~~~~g~~v~l~C~~~~g~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~~------~~~~~L~i~~~~~~d~G~Y~C~a 189 (217)
T 2vr9_A 116 KDTRVAKGETALLECGPPKGIPEPTLIWIKDGVPLDDLKAMSFGASSRVRI------VDGGNLLISNVEPIDEGNYKCIA 189 (217)
T ss_dssp CCEEECTTSCEEECCBCCCEESCCEEEEEETTEEECCCCCC---CCCSEEE------ETTTEEEESSCCSTTCEEEEEEE
T ss_pred CccEEcCCCeEEEEEECCCCCCCCeEEEEECCcCCCcccccccccCCcEEe------cCCCcEEEeeCCHHHCeEEEEEE
Confidence 34567889999999999 89999999999998877643221100 011111 12347999999999999999999
Q ss_pred ccCCCCcccceEEEEE
Q psy12044 340 ENQAGSTSSNYTIRIV 355 (767)
Q Consensus 340 ~N~~G~s~~s~sL~V~ 355 (767)
.|..|.......+.+.
T Consensus 190 ~N~~G~~~~~~~~lv~ 205 (217)
T 2vr9_A 190 QNLVGTRESSYAKLIV 205 (217)
T ss_dssp EETTEEEECCCEEEEE
T ss_pred EcccceeccccEEEEE
Confidence 9999988776544433
No 256
>2jll_A NCAM2, neural cell adhesion molecule 2; immunoglobulin domain, immunoglobulin superfamily, transmembrane, phosphoprotein, membrane, glycoprotein; HET: NAG; 2.30A {Homo sapiens} PDB: 2xyc_A* 2jlk_A* 2doc_A
Probab=97.35 E-value=0.00024 Score=76.69 Aligned_cols=89 Identities=21% Similarity=0.356 Sum_probs=65.5
Q ss_pred ceeecccccccccccccccCCCcEEEeec--CeeccCCCcccccccceeecccCcceeeeEEEEeeeccCCCCceeEeec
Q psy12044 263 YLEIQEGKNVSLLCKVSAIPEAKITWLFD--GVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCVAE 340 (767)
Q Consensus 263 ~~~v~~G~~vsL~C~a~g~P~p~itW~~~--g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~GtY~CvA~ 340 (767)
...+.+|+.+.|.|.+.+.|.+.+.|.++ +..+......... + +.... ....+.|.|.++..+|.|.|.|.|.
T Consensus 9 ~~~~~~G~~v~l~C~~~g~p~p~v~W~~~~~g~~~~~~~~~~~~-~-~~~~~---~~~~~~L~i~~v~~~D~G~Y~C~a~ 83 (389)
T 2jll_A 9 NETTYENGQVTLVCDAEGEPIPEITWKRAVDGFTFTEGDKSLDG-R-IEVKG---QHGSSSLHIKDVKLSDSGRYDCEAA 83 (389)
T ss_dssp CEEEETTSEEEEEEEEECSSCCEEEEEETTTTEEECC--CCSSS-S-EEEEE---CSSEEEEEEESCCGGGCEEEEEEEE
T ss_pred ceEEeCCCeEEEEEEeecccCCeEEEEeCCCCceeccCcCCCCC-e-EEEec---cCCcceEEEcccChhhCEEEEEEEE
Confidence 45677899999999999999999999998 7766542211111 1 11111 1235689999999999999999999
Q ss_pred cCCCCcccceEEEEEe
Q psy12044 341 NQAGSTSSNYTIRIVL 356 (767)
Q Consensus 341 N~~G~s~~s~sL~V~~ 356 (767)
|..|.....+.|.|..
T Consensus 84 n~~g~~~~~~~l~V~~ 99 (389)
T 2jll_A 84 SRIGGHQKSMYLDIEY 99 (389)
T ss_dssp CSSCEEEEEEEEEEEE
T ss_pred eCCCCcceEEEEEEEe
Confidence 9999887777777664
No 257
>3k0w_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1, isoform 2; hydrolase, immunoglobulin domain, nucleus, protease; 2.80A {Homo sapiens}
Probab=97.34 E-value=0.0002 Score=71.22 Aligned_cols=76 Identities=21% Similarity=0.405 Sum_probs=59.9
Q ss_pred ccceeecccccccccccccccCCCcEEEeecCeeccCCCcccccccceeecccCcceeeeEEEEeeeccCCCCceeEeec
Q psy12044 261 TFYLEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCVAE 340 (767)
Q Consensus 261 ~~~~~v~~G~~vsL~C~a~g~P~p~itW~~~g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~GtY~CvA~ 340 (767)
+....+..|..+.|.|.+.+.|.+.+.|.+++..+.... ...|.|.++...|.|.|+|.|.
T Consensus 125 ~~~~~v~~G~~v~L~C~~~g~p~~~v~W~~~~~~~~~~~-------------------~~~L~i~~v~~~d~G~Y~C~a~ 185 (218)
T 3k0w_A 125 PTSQKLMPGSTLVLQCVAVGSPIPHYQWFKNELPLTHET-------------------KKLYMVPYVDLEHQGTYWCHVY 185 (218)
T ss_dssp CCCEEECTTCCEEEECEEEBSSCCEEEEEETTEECTTCC-------------------SSEEEESSCCGGGCEEEEEEEE
T ss_pred CCceeecCCCcEEEEEEecccCCCeEEEEECCEECCCCC-------------------CCEEEEeecChhcCEEEEEEEE
Confidence 334567889999999999999999999999887664321 2468999999999999999999
Q ss_pred cCCCC-cccceEEEEE
Q psy12044 341 NQAGS-TSSNYTIRIV 355 (767)
Q Consensus 341 N~~G~-s~~s~sL~V~ 355 (767)
|..|. ....+.+.|.
T Consensus 186 n~~g~~~s~~~~l~V~ 201 (218)
T 3k0w_A 186 NDRDSQDSKKVEIIID 201 (218)
T ss_dssp CSSCEEECCCEEEEEC
T ss_pred cCCCCceeeeEEEEEe
Confidence 98887 3334555543
No 258
>1rhf_A Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3 family, cellular adhesion, ligand-independent DIME mutational analysis, transferase; HET: EPE; 1.96A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4
Probab=97.33 E-value=0.00036 Score=66.62 Aligned_cols=92 Identities=22% Similarity=0.356 Sum_probs=65.2
Q ss_pred CCCCccceeecccccccccccccccCCCcEEEeecCeeccCCCcccccccceeecccCcceeeeEEEEeeeccCCCCcee
Q psy12044 257 ITPSTFYLEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFV 336 (767)
Q Consensus 257 i~~~~~~~~v~~G~~vsL~C~a~g~P~p~itW~~~g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~GtY~ 336 (767)
+...+....+..|+.+.|.|.+.+.|.+.+.|.+++..+..... ......+ ....+.|.|.++...|.|.|.
T Consensus 5 ~~~~p~~~~v~~G~~v~l~C~~~~~p~~~v~W~k~~~~~~~~~~-------~~~~~~~-~~~~~~L~i~~~~~~d~G~Y~ 76 (182)
T 1rhf_A 5 LMGAPVKLTVSQGQPVKLNCSVEGMEEPDIQWVKDGAVVQNLDQ-------LYIPVSE-QHWIGFLSLKSVERSDAGRYW 76 (182)
T ss_dssp --CCCEEEEEETTCCEEEEEEEESCSSCCEEEEETTEECCSSEE-------EEEEEET-TEEEEEEEESSCCGGGCEEEE
T ss_pred EEeCCcceEEeCCCcEEEEEEEeCCCCCeEEEEECCeecCCCCc-------eEEEecC-CCceEEEEEeecCcccCeEEE
Confidence 33445567788999999999999999999999998876644311 1111111 223578999999999999999
Q ss_pred EeeccCCCCc-ccceEEEEEe
Q psy12044 337 CVAENQAGST-SSNYTIRIVL 356 (767)
Q Consensus 337 CvA~N~~G~s-~~s~sL~V~~ 356 (767)
|.+.+..|.. ...+.+.|..
T Consensus 77 C~~~~~~~~~~~~~~~l~V~~ 97 (182)
T 1rhf_A 77 CQVEDGGETEISQPVWLTVEG 97 (182)
T ss_dssp EEESSCTTCEECCCEEEEEEC
T ss_pred EEEEcCCCcEEEEEEEEEEec
Confidence 9999986653 3456666553
No 259
>2yd6_A PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sapiens} PDB: 2yd7_A 2yd2_A 2yd3_A 2yd4_A* 2yd8_A* 2yd5_A* 3pxh_A
Probab=97.33 E-value=0.00012 Score=72.30 Aligned_cols=87 Identities=24% Similarity=0.428 Sum_probs=61.0
Q ss_pred cceeecccccccccccccccCCCcEEEeecCeeccCCCcccccccceeecccCcceeeeEEEEeeeccCCCCceeEeecc
Q psy12044 262 FYLEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCVAEN 341 (767)
Q Consensus 262 ~~~~v~~G~~vsL~C~a~g~P~p~itW~~~g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~GtY~CvA~N 341 (767)
....+..|..+.|.|.+.+.|.+.+.|.+++..+...... ..+.... ....+.|.|.++...|.|.|+|.|.|
T Consensus 116 ~~~~~~~g~~v~l~C~~~g~p~p~v~W~~~g~~l~~~~~~----~~~~~~~---~~~~~~L~i~~~~~~d~G~Y~C~a~N 188 (212)
T 2yd6_A 116 QLKVVERTRTATMLCAASGNPDPEITWFKDFLPVDTSNNN----GRIKQLR---SESIGALQIEQSEESDQGKYECVATN 188 (212)
T ss_dssp CCEEEETTSCEEEEEEEECSSCCEEEEEETTEEC----------CCEEEEE---ETTEEEEEECSCCGGGCEEEEEEEEE
T ss_pred cceeEecCCCEEEEEEecCCCCCeEEEEECCccccCcCCC----ceEEEEe---cCCeEEEEEcCCCcccCEEEEEEEEC
Confidence 3456778999999999999999999999998776543111 0011110 11247899999999999999999999
Q ss_pred CCCCcccc-eEEEEE
Q psy12044 342 QAGSTSSN-YTIRIV 355 (767)
Q Consensus 342 ~~G~s~~s-~sL~V~ 355 (767)
..|...+. +.+.+.
T Consensus 189 ~~G~~~s~~a~l~~~ 203 (212)
T 2yd6_A 189 SAGTRYSAPANLYVR 203 (212)
T ss_dssp TTEEEECCCEEEEEE
T ss_pred CCCccccccccEEEE
Confidence 99987653 444443
No 260
>2dm7_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2edl_A 2edw_A 2gqh_A 2edt_A 2edq_A 2edr_A
Probab=97.33 E-value=0.00029 Score=61.81 Aligned_cols=75 Identities=21% Similarity=0.434 Sum_probs=53.3
Q ss_pred CCCCCCccceeecccccccccccccccCCCcEEEeecCeeccCCCcccccccceeecccCcceeeeEEEEeeeccCCCCc
Q psy12044 255 PQITPSTFYLEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGT 334 (767)
Q Consensus 255 P~i~~~~~~~~v~~G~~vsL~C~a~g~P~p~itW~~~g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~Gt 334 (767)
|.+........+.+|+.+.|.|.+.+. +.+.|.+++..+..... +.....+ ....|.|.++..+|.|.
T Consensus 9 p~~~~~~~~~~v~~G~~v~l~C~~~~~--p~v~W~k~~~~~~~~~~-------~~~~~~~---~~~~L~I~~v~~~D~G~ 76 (108)
T 2dm7_A 9 ARFTQDLKTKEASEGATATLQCELSKV--APVEWKKGPETLRDGGR-------YSLKQDG---TRCELQIHDLSVADAGE 76 (108)
T ss_dssp CCBCSCCBCCEEETTSCEEEEEEBSSS--CCCEEESSSSBCCSSSS-------CEEEEET---TEEEEEESSCCTTTCSE
T ss_pred CeeeecCCcEEEeCCCcEEEEEEeCCC--CeeEEEECCEECCCCCC-------EEEEecC---CEEEEEECCCCcccCEE
Confidence 444444556788899999999998765 78999998776543211 1111111 23569999999999999
Q ss_pred eeEeecc
Q psy12044 335 FVCVAEN 341 (767)
Q Consensus 335 Y~CvA~N 341 (767)
|.|.+.|
T Consensus 77 Y~C~a~n 83 (108)
T 2dm7_A 77 YSCMCGQ 83 (108)
T ss_dssp EEEEETT
T ss_pred EEEEEcC
Confidence 9999955
No 261
>3grw_A Fibroblast growth factor receptor 3; FGFR3, protein-protein complex, receptor tyrosine kinas binding, immunoglobulin domain, kinase, membrane, nucleotid binding; HET: NAG; 2.10A {Homo sapiens}
Probab=97.32 E-value=0.00027 Score=70.82 Aligned_cols=93 Identities=19% Similarity=0.286 Sum_probs=64.1
Q ss_pred ceeecccccccccccccccCCCcEEEee----cCeeccCCCcccccccceeecccCcceeeeEEEEeeeccCCCCceeEe
Q psy12044 263 YLEIQEGKNVSLLCKVSAIPEAKITWLF----DGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCV 338 (767)
Q Consensus 263 ~~~v~~G~~vsL~C~a~g~P~p~itW~~----~g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~GtY~Cv 338 (767)
...+..|..+.|.|.+.+.|.+.+.|.+ ++..+........ ..............+.|.|.++...|.|.|+|.
T Consensus 123 ~~~~~~g~~v~L~C~~~~~p~p~v~W~~~~~~~g~~~~~~~~~~~--~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~ 200 (241)
T 3grw_A 123 NQTAVLGSDVEFHCKVYSDAQPHIQWLKHVEVNGSKVGPDGTPYV--TVLKSWISESVEADVRLRLANVSERDGGEYLCR 200 (241)
T ss_dssp SEECCTTCCEEEEEEEECSSCCEEEEEEECCSSSCSSCTTTCCCE--EEEEEEECSBSEEEEEEEECSCCGGGCEEEEEE
T ss_pred cceecCCCEEEEEEEEecCCCCEEEEEEcccCCCcccCCCCceee--eeeeEeeeeecCCceEEEECcCCcccCcEEEEE
Confidence 4456789999999999999999999999 5554432221100 000011112233467899999999999999999
Q ss_pred eccCCCCcccceEEEEEee
Q psy12044 339 AENQAGSTSSNYTIRIVLK 357 (767)
Q Consensus 339 A~N~~G~s~~s~sL~V~~~ 357 (767)
+.|..|.....+.+.|...
T Consensus 201 a~N~~g~~~~~~~l~V~~~ 219 (241)
T 3grw_A 201 ATNFIGVAEKAFWLSVHGP 219 (241)
T ss_dssp EECSSCEEEEEEEEEC---
T ss_pred EecCcceEEEEEEEEecCC
Confidence 9999999877777766543
No 262
>3jz7_A MCAR, CAR, coxsackievirus and adenovirus receptor homolog; cell adhesion molecule, immunoglobuline superfamily, alternative splicing, cell adhesion; 2.19A {Mus musculus} PDB: 3mj7_B* 2npl_X
Probab=97.31 E-value=0.00012 Score=71.59 Aligned_cols=77 Identities=17% Similarity=0.350 Sum_probs=57.5
Q ss_pred eecccccccccccc-cccCCCcEEEeecCe--eccCCCcccccccceeecccCcceeeeEEEEeeeccCCCCceeEeecc
Q psy12044 265 EIQEGKNVSLLCKV-SAIPEAKITWLFDGV--PIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCVAEN 341 (767)
Q Consensus 265 ~v~~G~~vsL~C~a-~g~P~p~itW~~~g~--~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~GtY~CvA~N 341 (767)
.+..|..+.|.|.+ .+.|.+.+.|.+++. .+..... .....+.|.|.++..+|.|.|+|.|.|
T Consensus 132 ~~~~g~~v~l~C~~~~g~p~~~v~W~~~~~~~~~~~~~~--------------~~~~~~~L~i~~~~~~d~G~Y~C~a~N 197 (214)
T 3jz7_A 132 SEEIGNDFKLKCEPKEGSLPLQFEWQKLSDSQTMPTPWL--------------AEMTSPVISVKNASSEYSGTYSCTVQN 197 (214)
T ss_dssp CCBTTCCEEEEEECSBCCSSCEEEEEECSTTCCCCGGGG--------------GGTTSSEEEECSCCGGGCEEEEEEEEC
T ss_pred ceecCCcEEEEecCCCCCCCCEEEEEECCCCCccCccce--------------eccCCCEEEEecCCHHHCEEEEEEEEc
Confidence 46789999999999 899999999999532 2211100 011234899999999999999999999
Q ss_pred CCCCcccceEEEEE
Q psy12044 342 QAGSTSSNYTIRIV 355 (767)
Q Consensus 342 ~~G~s~~s~sL~V~ 355 (767)
..|.....+.+.|.
T Consensus 198 ~~g~~~~~~~l~V~ 211 (214)
T 3jz7_A 198 RVGSDQCMLRLDVV 211 (214)
T ss_dssp SSCEEEEEEEECCB
T ss_pred CCCcEEEEEEEEEe
Confidence 99988766655543
No 263
>2x1w_L Vascular endothelial growth factor receptor 2; hormone-signaling protein complex, angiogenesis, glycoprotein, HOST-virus interaction, membrane; HET: NAG BMA; 2.70A {Homo sapiens} PDB: 2x1x_R*
Probab=97.31 E-value=0.00023 Score=70.56 Aligned_cols=89 Identities=16% Similarity=0.285 Sum_probs=61.3
Q ss_pred eeecccccccccccccccCC--CcEEEeecCeeccCCCc-ccccccceeeccc-CcceeeeEEEEeeeccCCCCceeEee
Q psy12044 264 LEIQEGKNVSLLCKVSAIPE--AKITWLFDGVPIQNESM-SASESHAVYSTEE-GTEIKKSELLIYNSNIDDNGTFVCVA 339 (767)
Q Consensus 264 ~~v~~G~~vsL~C~a~g~P~--p~itW~~~g~~l~~~s~-~~~~~~~~~~~~~-g~~~~~s~L~I~nvs~sD~GtY~CvA 339 (767)
..+..|+.++|.|.+.+.|. +.+.|.+++..+..... .. . ...... ......+.|.|.++..+|.|.|.|.|
T Consensus 115 ~~v~~G~~v~L~C~~~g~p~~~~~i~W~~~g~~~~~~~~~~~---~-~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a 190 (213)
T 2x1w_L 115 IELSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNR---D-LKTQSGSEMKKFLSTLTIDGVTRSDQGLYTCAA 190 (213)
T ss_dssp EEEETTCCEEEEEEEEECTTBCCEEEEECSCSSCCSEEEEEE---E-ECCCSSCSCEEEEEEEEESSCCGGGCEEEEEEE
T ss_pred eEEcCCCCEEEEEEEECCCCCceEEEEEecCCccceEEEecc---c-cccccCccceeeeEEEEECCCCcccCEEEEEEE
Confidence 47789999999999998654 57999987765322111 00 0 000000 01233568999999999999999999
Q ss_pred ccCCCCcccceEEEEEe
Q psy12044 340 ENQAGSTSSNYTIRIVL 356 (767)
Q Consensus 340 ~N~~G~s~~s~sL~V~~ 356 (767)
.|..|.....+.+.|..
T Consensus 191 ~N~~g~~~~~~~l~V~~ 207 (213)
T 2x1w_L 191 SSGLMTKKNSTFVRVHE 207 (213)
T ss_dssp ECSSCEEEEEEEEEEEC
T ss_pred ecCCCcEEEEEEEEEec
Confidence 99999887777666653
No 264
>2edh_A Obscurin; structural genomics, NPPSFA, national project on P structural and functional analyses, riken structural genomics/proteomics initiative; NMR {Homo sapiens}
Probab=97.31 E-value=0.00026 Score=62.71 Aligned_cols=80 Identities=20% Similarity=0.399 Sum_probs=55.7
Q ss_pred CccceeecccccccccccccccCCCcEEEeecCeeccCCCcccccccceeecccCcceeeeEEEEeeeccCCCCceeEee
Q psy12044 260 STFYLEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCVA 339 (767)
Q Consensus 260 ~~~~~~v~~G~~vsL~C~a~g~P~p~itW~~~g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~GtY~CvA 339 (767)
......+.+|+.+.|.|.+.+. |.+.|++++..+..... +.....+ ....|.|.++..+|.|.|.|.+
T Consensus 25 ~~~~~~v~~G~~v~l~C~~~~~--p~v~W~k~~~~l~~~~~-------~~~~~~~---~~~~L~I~~v~~~D~G~Y~C~a 92 (113)
T 2edh_A 25 GLRNEEATEGATAVLRCELSKM--APVEWWKGHETLRDGDR-------HSLRQDG---ARCELQIRGLVAEDAGEYLCMC 92 (113)
T ss_dssp CCCCCEECTTSCEEEEEEESSC--CCCEEEESSSBCCCSSS-------EEEEEET---TEEEEEECSCCSTTCEEEEEEE
T ss_pred cCCceEEeCCCeEEEEEEECCC--CcEEEEECCEECCCCCc-------EEEEECC---CEEEEEECCCChhhCEEEEEEe
Confidence 3445678899999999999775 78999998876643211 1111111 2357999999999999999999
Q ss_pred ccCCCCcccceEEEEE
Q psy12044 340 ENQAGSTSSNYTIRIV 355 (767)
Q Consensus 340 ~N~~G~s~~s~sL~V~ 355 (767)
|.....+.+.|.
T Consensus 93 ----~~~~~~~~l~V~ 104 (113)
T 2edh_A 93 ----GKERTSAMLTVR 104 (113)
T ss_dssp ----TTEEEEEEEEEC
T ss_pred ----CCCCEEEEEEEe
Confidence 444445555544
No 265
>2ny1_B T-cell surface glycoprotein CD4; HIV, GP120, CD4, viral protein-immune system compl; HET: NAG SUC; 1.99A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 2nxz_B* 2ny0_B* 2nxy_B* 2ny2_B* 2ny3_B* 2ny4_B* 2ny5_C* 2ny6_B* 3jwd_C* 3jwo_C* 1g9m_C* 1g9n_C* 1gc1_C* 1rzj_C* 1rzk_C* 3o2d_A 3cd4_A 3lqa_C* 2b4c_C* 2qad_B* ...
Probab=97.30 E-value=0.00016 Score=69.52 Aligned_cols=73 Identities=11% Similarity=0.146 Sum_probs=58.9
Q ss_pred eeecccccccccccccccCCCcEEEeecCeeccCCCcccccccceeecccCcceeeeEEEEeeeccCCCCceeEeeccCC
Q psy12044 264 LEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCVAENQA 343 (767)
Q Consensus 264 ~~v~~G~~vsL~C~a~g~P~p~itW~~~g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~GtY~CvA~N~~ 343 (767)
..+..|+.+.|.|.+.+.|.+.+.|.+++..+ ......|.|.++..+|.|.|+|.|.|..
T Consensus 107 ~~v~~g~~~~l~C~~~~~p~~~v~W~~~~~~~--------------------~~~~~~L~i~~v~~~d~G~Y~C~a~n~~ 166 (184)
T 2ny1_B 107 THLLQGQSLTLTLESPPGSSPSVQCRSPRGKN--------------------IQGGKTLSVSQLELQDSGTWTCTVLQNQ 166 (184)
T ss_dssp SEEETTCCEEEEEECCTTCCCEEEEECTTSCE--------------------EEESSEEEESSCCGGGCEEEEEEEEETT
T ss_pred ceeecCCCEEEEEEcCCCCCCEEEEEeCCCcc--------------------ccCceEEEEecCCcCCCeEEEEEEEECC
Confidence 35678999999999999999999999876433 1234579999999999999999999988
Q ss_pred CCcccceEEEEEe
Q psy12044 344 GSTSSNYTIRIVL 356 (767)
Q Consensus 344 G~s~~s~sL~V~~ 356 (767)
+.....+.+.|..
T Consensus 167 ~~~~~~~~l~V~~ 179 (184)
T 2ny1_B 167 KKVEFKIDIVVLA 179 (184)
T ss_dssp EEEEEEEEEEEEC
T ss_pred ceEEEEEEEEEEe
Confidence 8777666665544
No 266
>2va4_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; transmembrane, phosphorylation, immunoglobulin domain, membrane, glycoprotein; HET: NAG; 1.9A {Homo sapiens} PDB: 2xy1_A*
Probab=97.30 E-value=0.00021 Score=68.70 Aligned_cols=83 Identities=25% Similarity=0.500 Sum_probs=63.8
Q ss_pred cceeecccccccccccccccCCCcEEEeecCeeccCCCcccccccceeecccCcceeeeEEEEeeeccCCCCceeEeecc
Q psy12044 262 FYLEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCVAEN 341 (767)
Q Consensus 262 ~~~~v~~G~~vsL~C~a~g~P~p~itW~~~g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~GtY~CvA~N 341 (767)
....+.+|+.+.|.|.+.+.|.+.+.|.+++..+..... +... .....|.|.++...|.|.|.|.+.+
T Consensus 12 ~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~-------~~~~-----~~~~~L~i~~~~~~d~G~Y~C~~~~ 79 (192)
T 2va4_A 12 FNATAERGEEMTFSCRASGSPEPAISWFRNGKLIEENEK-------YILK-----GSNTELTVRNIINSDGGPYVCRATN 79 (192)
T ss_dssp EEEETTSCCCEEEECEEECSSCCEEEEEETTEECCCSSS-------EEEE-----TTTTEEEECSCCGGGCEEEEEEEEE
T ss_pred cEEEEecCCCEEEEEeeccCCCCeEEEEECCeEcCCCcc-------EEEe-----CCeeEEEEecCChhcCcEEEEEEEc
Confidence 356778999999999999999999999998877654321 1111 1124799999999999999999999
Q ss_pred CCCCcccceEEEEEe
Q psy12044 342 QAGSTSSNYTIRIVL 356 (767)
Q Consensus 342 ~~G~s~~s~sL~V~~ 356 (767)
..|.....+.+.|..
T Consensus 80 ~~~~~~~~~~l~V~~ 94 (192)
T 2va4_A 80 KAGEDEKQAFLQVFV 94 (192)
T ss_dssp TTEEEEEEEEEEEEE
T ss_pred cccccceEEEEEEEc
Confidence 988777666666644
No 267
>2nzi_A Titin; IG-domain, FNIII-domain, transferase; 2.90A {Homo sapiens}
Probab=97.29 E-value=0.00019 Score=74.76 Aligned_cols=89 Identities=24% Similarity=0.366 Sum_probs=65.7
Q ss_pred CccceeecccccccccccccccCCCcEEEeecCeeccCCCcccccccceeecccCcceeeeEEEEeeeccCCCCceeEee
Q psy12044 260 STFYLEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCVA 339 (767)
Q Consensus 260 ~~~~~~v~~G~~vsL~C~a~g~P~p~itW~~~g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~GtY~CvA 339 (767)
.+....+..|+.+.|.|.+.+.|.+.+.|.+++..+..... + +.... .......|.|.++...|.|.|.|.+
T Consensus 10 ~p~~~~v~~G~~v~l~C~~~g~p~~~v~W~~~~~~~~~~~~-----~-~~~~~--~~~~~~~L~i~~v~~~d~G~Y~C~a 81 (305)
T 2nzi_A 10 ELRNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADGL-----K-YRIQE--FKGGYHQLIIASVTDDDATVYQVRA 81 (305)
T ss_dssp CCCCEEECTTCCEEEEEEEECSSCCEEEEEETTEECCCCSS-----S-EEEEE--ETTTEEEEEESSCCGGGCSEEEEEE
T ss_pred cccceEEeCCCcEEEEEEEeCCCCCeEEEEECCEEcccCCC-----e-EEEEE--CCCCEEEEEEccCChhhCeEEEEEE
Confidence 34457788999999999999999999999998876643211 0 11110 0112357999999999999999999
Q ss_pred ccCCCCcccceEEEEEe
Q psy12044 340 ENQAGSTSSNYTIRIVL 356 (767)
Q Consensus 340 ~N~~G~s~~s~sL~V~~ 356 (767)
.|..|.....+.+.|..
T Consensus 82 ~n~~g~~~~~~~l~V~~ 98 (305)
T 2nzi_A 82 TNQGGSVSGTASLEVEV 98 (305)
T ss_dssp EETTEEEEEEEEEEECE
T ss_pred EcCCCCccceEEEEEec
Confidence 99988876666666654
No 268
>2c5d_C AXL oncogene, tyrosine-protein kinase receptor UFO; signaling protein/receptor, growth regulation/complex, vitamin K-dependent protein; HET: NAG; 3.3A {Homo sapiens}
Probab=97.29 E-value=0.00021 Score=69.19 Aligned_cols=77 Identities=25% Similarity=0.412 Sum_probs=60.0
Q ss_pred ccceeecccccccccccccccCCC-cEEEeecCeeccCCCcccccccceeecccCcceeeeEEEEeeeccCCCCceeEee
Q psy12044 261 TFYLEIQEGKNVSLLCKVSAIPEA-KITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCVA 339 (767)
Q Consensus 261 ~~~~~v~~G~~vsL~C~a~g~P~p-~itW~~~g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~GtY~CvA 339 (767)
+....+..|..+.|.|.+.+.|.+ .+.|.+++..+...... ...+.|.|.++. |.|.|.|.|
T Consensus 113 ~~~~~~~~g~~~~l~C~~~g~p~p~~v~W~~~~~~~~~~~~~---------------~~~~~L~i~~~~--d~G~Y~C~a 175 (195)
T 2c5d_C 113 PEDRTVAANTPFNLSCQAQGPPEPVDLLWLQDAVPLATAPGH---------------GPQRSLHVPGLN--KTSSFSCEA 175 (195)
T ss_dssp CCCEEECTTCCEEEEEEEECSSCCCEEEEEESSCBSSSSTTS---------------SCCEEEEECCCS--SCEEEEEEE
T ss_pred CCcEEEcCCCEEEEEeECCCCCCCCEEEEEECCEeccCCCCc---------------CCCCeEEEcccc--cCceEEEEE
Confidence 334667889999999999999999 99999988766433221 234578888877 789999999
Q ss_pred ccCCCCcc-cceEEEE
Q psy12044 340 ENQAGSTS-SNYTIRI 354 (767)
Q Consensus 340 ~N~~G~s~-~s~sL~V 354 (767)
.|..|... ..+.+.|
T Consensus 176 ~N~~g~~~s~~~~l~V 191 (195)
T 2c5d_C 176 HNAKGVTTSRTATITV 191 (195)
T ss_dssp EETTEEEECCCEEEEE
T ss_pred EcCCCceEEEEEEEEE
Confidence 99999875 5676665
No 269
>3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo sapiens} PDB: 3p40_A*
Probab=97.29 E-value=0.00017 Score=78.11 Aligned_cols=82 Identities=18% Similarity=0.486 Sum_probs=63.8
Q ss_pred cceeecccccccccccccccCCCcEEEeecCeeccCCCcccccccceeecccCcceeeeEEEEeeeccCCCCceeEeecc
Q psy12044 262 FYLEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCVAEN 341 (767)
Q Consensus 262 ~~~~v~~G~~vsL~C~a~g~P~p~itW~~~g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~GtY~CvA~N 341 (767)
....+..|+.+.|.|.+.+.|.+.+.|.+++..+....... . . ....+.|.|.++..+|.|.|.|.|.|
T Consensus 320 ~~~~v~~g~~~~l~C~~~g~p~p~v~W~~~g~~~~~~~~~~---~-~-------~~~~~~L~i~~v~~~d~G~Y~C~a~N 388 (404)
T 3p3y_A 320 KNLILAPGEDGRLVCRANGNPKPTVQWMVNGEPLQSAPPNP---N-R-------EVAGDTIIFRDTQISSRAVYQCNTSN 388 (404)
T ss_dssp CCEEECTTCCEEEECEEEEESCCEEEEEETTEEGGGSCCCT---T-E-------EEETTEEEESSCCSSCCCEEEEEEEE
T ss_pred CcceeecCCcEEEEEEccccCCCceEEEECCEecCCCCCCc---e-E-------EecCCEEEEeecCHHHCEEEEEEEEe
Confidence 34567789999999999999999999999988775432210 0 0 11234799999999999999999999
Q ss_pred CCCCcccceEEEE
Q psy12044 342 QAGSTSSNYTIRI 354 (767)
Q Consensus 342 ~~G~s~~s~sL~V 354 (767)
..|.....+.+.|
T Consensus 389 ~~G~~~~~~~l~V 401 (404)
T 3p3y_A 389 EHGYLLANAFVSV 401 (404)
T ss_dssp TTEEEEEEEEEEE
T ss_pred CCCcEEEEEEEEE
Confidence 9998877766654
No 270
>1epf_A NCAM, protein (neural cell adhesion molecule); immunoglobulin fold, glycoprotein; 1.85A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 PDB: 2ncm_A 3ncm_A
Probab=97.29 E-value=0.00013 Score=70.39 Aligned_cols=80 Identities=20% Similarity=0.265 Sum_probs=58.4
Q ss_pred cceeecccccccccccccccCCCcEEEeecCeeccCCCcccccccceeecccCcceeeeEEEEeeeccCCCCceeEeecc
Q psy12044 262 FYLEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCVAEN 341 (767)
Q Consensus 262 ~~~~v~~G~~vsL~C~a~g~P~p~itW~~~g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~GtY~CvA~N 341 (767)
....+..|..+.|.|.+.+.|.+.+.|.+++..+..... ..+.... .+.|.|.++...|.|.|.|.|.|
T Consensus 108 ~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~~~~~~~~~~-----~~~~~~~------~~~L~i~~~~~~d~G~Y~C~a~n 176 (191)
T 1epf_A 108 TPQEFKEGEDAVIVCDVVSSLPPTIIWKHKGRDVILKKD-----VRFIVLS------NNYLQIRGIKKTDEGTYRCEGRI 176 (191)
T ss_dssp SSEECCTTSCEEECCEEECSSCCEEEEEETTEEGGGGCC-----TTEEECT------TSCEEETTCCGGGCEEEEEEEEE
T ss_pred CcEeecCCCeEEEEEEECCCCCCEEEEEECCEEeeccCC-----ceEEEec------CCeEEECCCChhhCEEEEEEEEE
Confidence 345677899999999999999999999998877642211 1111111 23699999999999999999999
Q ss_pred CCCCcccceEE
Q psy12044 342 QAGSTSSNYTI 352 (767)
Q Consensus 342 ~~G~s~~s~sL 352 (767)
..+.......+
T Consensus 177 ~~~~~~~~~~i 187 (191)
T 1epf_A 177 LARGEINFKDI 187 (191)
T ss_dssp GGGTEEEEEEE
T ss_pred ecceeEEEEEE
Confidence 87654443333
No 271
>3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, CY receptor complex, extracellular complex; HET: NAG; 4.30A {Homo sapiens}
Probab=97.28 E-value=0.00032 Score=77.92 Aligned_cols=84 Identities=13% Similarity=0.220 Sum_probs=60.7
Q ss_pred ccceeecccccccccccccccCCCcEEEeecCeeccCCCcccccccceeecccCcceeeeEEEEeeeccCCCCceeEeec
Q psy12044 261 TFYLEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCVAE 340 (767)
Q Consensus 261 ~~~~~v~~G~~vsL~C~a~g~P~p~itW~~~g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~GtY~CvA~ 340 (767)
+..+++.+|+.+.|.|.+.+.|.+.+.|.+++..+...... .........|.|.++..+|.|.|.|.|.
T Consensus 55 ~~~v~V~~G~~v~L~C~v~g~P~p~i~W~~~~~~l~~~~~~-----------~~~~~~~~sL~I~~v~~~D~G~Y~C~a~ 123 (423)
T 3qs7_E 55 AAAVEVDVSASITLQVLVDAPGNISCLWVFKHSSLNCQPHF-----------DLQNRGVVSMVILKMTETQAGEYLLFIQ 123 (423)
T ss_dssp -CEEEECSSCCEEEEEECSCCSSCEEEEEETTEEECCCCBC----------------CEEEEEESSCCSSSCSEEEEEEE
T ss_pred cccEEEecCCcEEEEEEEEcCCCCeEEEEECCCccCcccee-----------ccccceEEEEEEeecCcccCEEEEEEEE
Confidence 34678999999999999999999999999987655321111 0011123468999999999999999999
Q ss_pred cCCCCcccceEEEEE
Q psy12044 341 NQAGSTSSNYTIRIV 355 (767)
Q Consensus 341 N~~G~s~~s~sL~V~ 355 (767)
|..|.....+.+.|.
T Consensus 124 N~~g~~~~~~~l~V~ 138 (423)
T 3qs7_E 124 SEATNYTILFTVSIR 138 (423)
T ss_dssp C--CEEEEEEEEEEC
T ss_pred cCCCcEEEEEEEEEe
Confidence 999877666655554
No 272
>2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion, membrane, development protein; HET: NAG; 1.95A {Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A*
Probab=97.28 E-value=0.00013 Score=78.84 Aligned_cols=72 Identities=21% Similarity=0.466 Sum_probs=60.4
Q ss_pred ceeecccccccccccccccCCCcEEEeecCeeccCCCcccccccceeecccCcceeeeEEEEeeeccCCCCceeEeeccC
Q psy12044 263 YLEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCVAENQ 342 (767)
Q Consensus 263 ~~~v~~G~~vsL~C~a~g~P~p~itW~~~g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~GtY~CvA~N~ 342 (767)
...+..|+.+.|.|.+.+.|.+.+.|.+++..+... .+.|.|.++...|.|.|.|.|.|.
T Consensus 316 ~~~v~~g~~~~l~C~~~g~p~p~i~W~~~g~~i~~~--------------------~~~L~i~~v~~~d~G~Y~C~a~N~ 375 (388)
T 2v5m_A 316 TQTVDFGRPAVFTCQYTGNPIKTVSWMKDGKAIGHS--------------------ESVLRIESVKKEDKGMYQCFVRND 375 (388)
T ss_dssp EEEECTTSCEEEEEEEEEECCCEEEEEETTEECSCC--------------------SSEEEESSCCGGGCEEEEEEEECS
T ss_pred cEEecCCCCEEEEEEeccccCCeEEEEECCEECccC--------------------CCEEEEecCChhhCEEEEEEEEcC
Confidence 346778999999999999999999999998766321 246999999999999999999999
Q ss_pred CCCcccceEEEE
Q psy12044 343 AGSTSSNYTIRI 354 (767)
Q Consensus 343 ~G~s~~s~sL~V 354 (767)
.|.....+.+.|
T Consensus 376 ~G~~~~~~~l~V 387 (388)
T 2v5m_A 376 RESAEASAELKL 387 (388)
T ss_dssp SCEEEEEEEEEE
T ss_pred CCcEEEEEEEEe
Confidence 998877666543
No 273
>3b5h_A Cervical EMMPRIN, HAB18G/CD147; IG-like domain, cell invasion; 2.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4
Probab=97.28 E-value=0.00037 Score=66.74 Aligned_cols=94 Identities=23% Similarity=0.392 Sum_probs=63.8
Q ss_pred CCCCCCccceeecccccccccccccccC-CCcEEEee---cCeeccCCCcccccccceeecccCcceeeeEEEEeeec-c
Q psy12044 255 PQITPSTFYLEIQEGKNVSLLCKVSAIP-EAKITWLF---DGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSN-I 329 (767)
Q Consensus 255 P~i~~~~~~~~v~~G~~vsL~C~a~g~P-~p~itW~~---~g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs-~ 329 (767)
|.+........+..|..+.|.|.+.+.| .+.+.|.+ ++........ ...+..... ...+.|.|.++. .
T Consensus 84 P~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~~i~W~~~~~~~~~~~~~~~----~~~~~~~~~---~~~~~L~i~~v~~~ 156 (184)
T 3b5h_A 84 PRVKAVKSSEHINEGETAMLVCKSESVPPVTDWAWYKITDSEDKALMNGS----ESRFFVSSS---QGRSELHIENLNME 156 (184)
T ss_dssp CCCEESCSEEEECTTSCEEEEEECCCSSCCCEEEEEECCSSSCEECCTTG----GGTEEEEEE---TTEEEEEECSCCTT
T ss_pred CceeecCCCcEEcCCCcEEEEEEECCCCCCCeEEEEEcCCCCCEEeecCC----CCEEEEEec---CCeeEEEEeecccc
Confidence 3333333445678899999999999999 79999999 3332221100 011111111 123589999999 8
Q ss_pred CCCCceeEeeccCCCCcccceEEEEE
Q psy12044 330 DDNGTFVCVAENQAGSTSSNYTIRIV 355 (767)
Q Consensus 330 sD~GtY~CvA~N~~G~s~~s~sL~V~ 355 (767)
.|.|.|.|.|.|..|.....+.+.|.
T Consensus 157 ~d~G~Y~C~a~N~~g~~~~~~~l~V~ 182 (184)
T 3b5h_A 157 ADPGQYRCNGTSSKGSDQAIITLRVR 182 (184)
T ss_dssp TSSEEEEEEEEETTEEEEEEEEEEEC
T ss_pred ccCceEEEEEEeCCCcceEEEEEEEe
Confidence 99999999999999988777666553
No 274
>2va4_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; transmembrane, phosphorylation, immunoglobulin domain, membrane, glycoprotein; HET: NAG; 1.9A {Homo sapiens} PDB: 2xy1_A*
Probab=97.28 E-value=0.0004 Score=66.63 Aligned_cols=85 Identities=22% Similarity=0.393 Sum_probs=60.0
Q ss_pred eecccccccccccccccCCCcEEEeec--CeeccCCCcccccccceeecccCcceeeeEEEEeeeccCCCCceeEeeccC
Q psy12044 265 EIQEGKNVSLLCKVSAIPEAKITWLFD--GVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCVAENQ 342 (767)
Q Consensus 265 ~v~~G~~vsL~C~a~g~P~p~itW~~~--g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~GtY~CvA~N~ 342 (767)
.+..|..+.|.|.+.+.|.+.+.|.++ +..+.......... +.... ....+.|.|.++..+|.|.|.|.|.|.
T Consensus 105 ~~~~g~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~--~~~~~---~~~~~~L~i~~~~~~d~G~Y~C~a~n~ 179 (192)
T 2va4_A 105 TTYENGQVTLVCDAEGEPIPEITWKRAVDGFTFTEGDKSLDGR--IEVKG---QHGSSSLHIKDVKLSDSGRYDCEAASR 179 (192)
T ss_dssp EECTTSEEEEEEEEEEESCCEEEEEETTTTEEECTTCBCTTSC--EEEEE---ETTEEEEEEESCCGGGCEEEEEEEECS
T ss_pred eEEeCCeEEEEEEecCCCCCcEEEEeCCCCceeeccccccCCc--EEEee---ccCceEEEEecCCcccCEEEEEEEEec
Confidence 456799999999999999999999997 44443322111111 11110 112467999999999999999999999
Q ss_pred CCCcccceEEEE
Q psy12044 343 AGSTSSNYTIRI 354 (767)
Q Consensus 343 ~G~s~~s~sL~V 354 (767)
.|.....+.+.|
T Consensus 180 ~g~~~~~~~l~V 191 (192)
T 2va4_A 180 IGGHQKSMYLDI 191 (192)
T ss_dssp SCEEEEEEEEEE
T ss_pred CCceEEEEEEEe
Confidence 998776665554
No 275
>3lcy_A Titin; A-BAND, IG tandem domains, ATP-binding, calmodulin-BI cardiomyopathy, disease mutation, disulfide bond, immunoglo domain, isopeptide bond; 2.50A {Homo sapiens}
Probab=97.27 E-value=0.0002 Score=69.04 Aligned_cols=83 Identities=16% Similarity=0.176 Sum_probs=62.4
Q ss_pred ceeecccccccccccccccCCCcEEEeecCeeccCCCcccccccceeecccCcceeeeEEEEeeecc-CCCCceeEeecc
Q psy12044 263 YLEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNI-DDNGTFVCVAEN 341 (767)
Q Consensus 263 ~~~v~~G~~vsL~C~a~g~P~p~itW~~~g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~-sD~GtY~CvA~N 341 (767)
...+..|..+.|.|.+.+.|.+.+.|.+++..+...... .... ......|.|.++.. +|.|.|+|.+.|
T Consensus 112 ~~~~~~g~~~~l~C~~~~~p~p~v~W~~~~~~~~~~~~~-------~~~~---~~~~~~L~i~~~~~~~d~G~Y~C~a~n 181 (197)
T 3lcy_A 112 KYYGAVGSTLRLHVMYIGRPVPAMTWFHGQKLLQNSENI-------TIEN---TEHYTHLVMKNVQRKTHAGKYKVQLSN 181 (197)
T ss_dssp EEEEETTSCEEEEEEEEEESCCEEEEEETTEECCCCSSE-------EEEE---CSSEEEEEESSCCHHHHCEEEEEEEEC
T ss_pred ceeecCCCeEEEEEEEeeeeCCeeEEeECCEECCCCCce-------EEEE---cCCEEEEEEccccchhhCceEEEEEEc
Confidence 345678999999999999999999999988776533211 1111 11236799999984 899999999999
Q ss_pred CCCCcccceEEEEE
Q psy12044 342 QAGSTSSNYTIRIV 355 (767)
Q Consensus 342 ~~G~s~~s~sL~V~ 355 (767)
..|.....+.+.|.
T Consensus 182 ~~g~~~~~~~l~V~ 195 (197)
T 3lcy_A 182 VFGTVDAILDVEIQ 195 (197)
T ss_dssp SSCEEEEEEEEEEE
T ss_pred CcCceEEEEEEEEe
Confidence 99988776666554
No 276
>3ejj_X Macrophage colony-stimulating factor 1 receptor; growth factor-receptor complex, receptor tyrosine kinase, CY 4-helix bundle, ATP-binding; HET: NAG; 2.40A {Mus musculus} PDB: 4exp_X*
Probab=97.26 E-value=0.00022 Score=73.42 Aligned_cols=87 Identities=16% Similarity=0.251 Sum_probs=65.3
Q ss_pred cceeecccccccccccccc-cCCCcEEEeecCeeccCCCcccccccceeecccCcceeeeEEEEeeeccCCCCceeEeec
Q psy12044 262 FYLEIQEGKNVSLLCKVSA-IPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCVAE 340 (767)
Q Consensus 262 ~~~~v~~G~~vsL~C~a~g-~P~p~itW~~~g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~GtY~CvA~ 340 (767)
....+..|..+.|.|.+.+ .|.+.+.|.+++..+...... ..........+.|.|.++..+|.|.|.|.|.
T Consensus 194 ~~~~~~~g~~~~l~C~~~~~~p~~~i~W~~~~~~~~~~~~~--------~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~ 265 (289)
T 3ejj_X 194 SKLVRIRGEAAQIVCSATNAEVGFNVILKRGDTKLEIPLNS--------DFQDNYYKKVRALSLNAVDFQDAGIYSCVAS 265 (289)
T ss_dssp SSEECCSSSCEEEEEEEEESSSCCEEEEEETTEECCCCEEE--------EECSSSEEEEEEEEESSCCSSSCEEEEEEEE
T ss_pred CceEEEeCCcEEEEEEeCCCCCceEEEEEECCEEeeccCCc--------ccccceEEeeEEEEEEeecccCCEEEEEEEE
Confidence 3445578999999999998 789999999988766432111 0012223346789999999999999999999
Q ss_pred cCCCCcccceEEEEEe
Q psy12044 341 NQAGSTSSNYTIRIVL 356 (767)
Q Consensus 341 N~~G~s~~s~sL~V~~ 356 (767)
|..|...+++.|.+..
T Consensus 266 N~~G~~~~s~~L~~~~ 281 (289)
T 3ejj_X 266 NDVGTRTATMNFQVVE 281 (289)
T ss_dssp CSSCEEEEEEEEECC-
T ss_pred cCCCCccccEEEEEEe
Confidence 9999988877776543
No 277
>2c5d_C AXL oncogene, tyrosine-protein kinase receptor UFO; signaling protein/receptor, growth regulation/complex, vitamin K-dependent protein; HET: NAG; 3.3A {Homo sapiens}
Probab=97.26 E-value=0.00031 Score=68.04 Aligned_cols=93 Identities=17% Similarity=0.216 Sum_probs=64.8
Q ss_pred Cccceeeccccccccccccc-ccCCCcEEEeecCeeccCCCcccccccceeecccCccee--eeEEEEeeeccCCCCcee
Q psy12044 260 STFYLEIQEGKNVSLLCKVS-AIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIK--KSELLIYNSNIDDNGTFV 336 (767)
Q Consensus 260 ~~~~~~v~~G~~vsL~C~a~-g~P~p~itW~~~g~~l~~~s~~~~~~~~~~~~~~g~~~~--~s~L~I~nvs~sD~GtY~ 336 (767)
.+....+.+|+.+.|.|.+. +.|.+.+.|.+++..+...... ...+.....+.... .+.|.|.++...|.|.|.
T Consensus 8 ~p~~~~v~~G~~v~l~C~~~~~~p~~~v~W~~~g~~l~~~~~~---~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~ 84 (195)
T 2c5d_C 8 NPGNITGARGLTGTLRCQLQVQGEPPEVHWLRDGQILELADST---QTQVPLGEDEQDDWIVVSQLRITSLQLSDTGQYQ 84 (195)
T ss_dssp CCCCEEECTTCCEEEEEEEEEESSCCCCEEEETTEECCSCEEE---EEEEECSSSTTSEEEEEEEEEESSCCSTTCEEEE
T ss_pred ChhheEEecCCcEEEecccccCCCCcEEEEEECCEEcccCCCC---ceEEEEccccccceeeccEEEEEeccccCCcEEE
Confidence 44566788999999999999 9999999999988776543110 00111111211222 578999999999999999
Q ss_pred EeeccCCCCcccc-eEEEEE
Q psy12044 337 CVAENQAGSTSSN-YTIRIV 355 (767)
Q Consensus 337 CvA~N~~G~s~~s-~sL~V~ 355 (767)
|.+.|..|..... +.+.|.
T Consensus 85 C~~~~~~~~~~~~~~~l~V~ 104 (195)
T 2c5d_C 85 CLVFLGHQTFVSQPGYVGLE 104 (195)
T ss_dssp EEEEETTEEEECCCEEEEEC
T ss_pred EEEEeCCCceecccEEEEEe
Confidence 9999987654433 555554
No 278
>2yd9_A Receptor-type tyrosine-protein phosphatase S; hydrolase; HET: NAG B3P; 2.60A {Homo sapiens}
Probab=97.25 E-value=0.00022 Score=74.39 Aligned_cols=92 Identities=17% Similarity=0.326 Sum_probs=62.6
Q ss_pred CCCCccceeecccccccccccccccCCCcEEEeecCeeccCCCcccccccceeecccCcceeeeEEEEeeecc-CCCCce
Q psy12044 257 ITPSTFYLEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNI-DDNGTF 335 (767)
Q Consensus 257 i~~~~~~~~v~~G~~vsL~C~a~g~P~p~itW~~~g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~-sD~GtY 335 (767)
+...+....+.+|+.+.|.|.+.+.|.+.+.|.+++..+...... ......+ ....|.|.++.. .|.|.|
T Consensus 9 ~~~~p~~~~v~~G~~v~l~C~~~g~p~~~i~W~k~g~~i~~~~~~------~~~~~~~---~~~~L~i~~~~~~~D~G~Y 79 (304)
T 2yd9_A 9 FIKEPKDQIGVSGGVASFVCQATGDPKPRVTWNKKGKKVNSQRFE------TIEFDES---AGAVLRIQPLRTPRDENVY 79 (304)
T ss_dssp EEECCCCEEEETTSCEEEEEEEECSSCCEEEEC-------CTTEE------EEEETTT---TEEEEEECSCCTTTTCSEE
T ss_pred eeecCCceEecCCCeEEEEEEEEEeCCCeEEEEECCEECCCCceE------EEEecCC---CceEEEEecccccCCCeEE
Confidence 333444567889999999999999999999999988766332111 1111111 136799999997 999999
Q ss_pred eEeeccCCCCcccceEEEEEee
Q psy12044 336 VCVAENQAGSTSSNYTIRIVLK 357 (767)
Q Consensus 336 ~CvA~N~~G~s~~s~sL~V~~~ 357 (767)
.|.+.|..|.....+.+.|...
T Consensus 80 ~C~a~n~~g~~~~~~~l~V~~~ 101 (304)
T 2yd9_A 80 ECVAQNSVGEITVHAKLTVLRE 101 (304)
T ss_dssp EEEEECSSCEECCEEEEEEECG
T ss_pred EEEEECCCCeEEEEEEEEEecc
Confidence 9999999998777777777653
No 279
>2eo1_A OBSCN protein, cDNA FLJ14124 FIS, clone mamma1002498; beta-sandwich, IG-fold, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.25 E-value=0.00042 Score=60.04 Aligned_cols=68 Identities=21% Similarity=0.419 Sum_probs=51.4
Q ss_pred ceeecccccccccccccccCCCcEEEeecCeeccCCCcccccccceeecccCcceeeeEEEEeeeccCCCCceeEeecc
Q psy12044 263 YLEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCVAEN 341 (767)
Q Consensus 263 ~~~v~~G~~vsL~C~a~g~P~p~itW~~~g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~GtY~CvA~N 341 (767)
...+..|+.+.|.|.+. .|.+.+.|++++..+..... +..... .....|.|.++...|.|.|.|.+.+
T Consensus 20 ~~~v~~G~~v~L~C~~~-~p~~~v~W~k~g~~~~~~~~-------~~~~~~---~~~~~L~I~~~~~~D~G~Y~C~a~~ 87 (102)
T 2eo1_A 20 EVQAEAGASATLSCEVA-QAQTEVTWYKDGKKLSSSSK-------VRVEAV---GCTRRLVVQQAGQAEAGEYSCEAGG 87 (102)
T ss_dssp EEEEETTCCEEECCBCS-CSSSCCEEEETTEECCCCSS-------EEEEEE---TTEEEEEETTCCTTTCSCEEEEETT
T ss_pred cEEEeCCCcEEEEEEec-CCCCceEEEECCEECCCCCC-------EEEEEc---CCEEEEEECCCCcccCEEEEEEcCC
Confidence 45778999999999998 88899999999877643221 111111 1235799999999999999999964
No 280
>2cpc_A KIAA0657 protein; immunoglobulin domain, IG domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.25 E-value=0.00036 Score=61.66 Aligned_cols=77 Identities=19% Similarity=0.473 Sum_probs=55.3
Q ss_pred eeecccccccccccccccCCCcEEEeecCeeccCCCcccccccceeecccCcceeeeEEEEeeeccCCCCceeEeeccCC
Q psy12044 264 LEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCVAENQA 343 (767)
Q Consensus 264 ~~v~~G~~vsL~C~a~g~P~p~itW~~~g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~GtY~CvA~N~~ 343 (767)
..+..|+.+.|.|.+. .|.+.+.|++++..+..... +.....+ ....|.|.++..+|.|.|.|.+.|
T Consensus 23 ~~~~~G~~v~L~C~~~-~p~~~v~W~k~g~~~~~~~~-------~~~~~~~---~~~~L~I~~v~~~D~G~Y~C~a~n-- 89 (113)
T 2cpc_A 23 VAAVRLERVVLTCELC-RPWAEVRWTKDGEEVVESPA-------LLLQKED---TVRRLVLPAVQLEDSGEYLCEIDD-- 89 (113)
T ss_dssp EEEETTCCEEEEEEES-CTTCCCEEEETTEECCCBTT-------BEEEECS---SEEEEEESSCCTTTCEEEEEESSS--
T ss_pred EEEEcCCeEEEEEEec-CCCCeEEEEECCEECccCCC-------EEEEECC---CEEEEEECCCCcccCEEEEEEEec--
Confidence 5677899999999985 78899999998877654221 1111111 235799999999999999999998
Q ss_pred CCcccceEEEEE
Q psy12044 344 GSTSSNYTIRIV 355 (767)
Q Consensus 344 G~s~~s~sL~V~ 355 (767)
....+.+.|.
T Consensus 90 --~~~~~~l~V~ 99 (113)
T 2cpc_A 90 --ESASFTVTVT 99 (113)
T ss_dssp --CEEEEEEEEE
T ss_pred --CcEEEEEEEe
Confidence 3334445444
No 281
>1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A {Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4
Probab=97.23 E-value=0.00014 Score=78.64 Aligned_cols=76 Identities=22% Similarity=0.530 Sum_probs=61.6
Q ss_pred eeecccccccccccccccCCCcEEEeecCeeccCCCcccccccceeecccCcceeeeEEEEeeeccCCCCceeEeeccCC
Q psy12044 264 LEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCVAENQA 343 (767)
Q Consensus 264 ~~v~~G~~vsL~C~a~g~P~p~itW~~~g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~GtY~CvA~N~~ 343 (767)
..+..|+.+.|.|.+.+.|.+.+.|.+++..+..... .. ..+.|.|.++..+|.|.|+|.|.|..
T Consensus 319 ~~~~~g~~~~l~C~~~g~p~p~v~W~~~g~~~~~~~~--------~~-------~~~~L~i~~~~~~d~G~Y~C~a~N~~ 383 (395)
T 1bih_A 319 IVVKQGQDVTIPCKVTGLPAPNVVWSHNAKPLSGGRA--------TV-------TDSGLVIKGVKNGDKGYYGCRATNEH 383 (395)
T ss_dssp EEECTTSCEEEECEEEEESCCCCEEEETTEECCSSSE--------EE-------ETTEEEESSCCSTTCEEEEEEEEETT
T ss_pred eEecCCCeEEEEEEECcccCCeeEEEECCEECCCCce--------EE-------ECCEEEEeeCCcccCEEEEEEEEccC
Confidence 5677899999999999999999999999887654311 11 12379999999999999999999999
Q ss_pred CCcccceEEEE
Q psy12044 344 GSTSSNYTIRI 354 (767)
Q Consensus 344 G~s~~s~sL~V 354 (767)
|.....+.+.|
T Consensus 384 G~~~~~~~l~V 394 (395)
T 1bih_A 384 GDKYFETLVQV 394 (395)
T ss_dssp EEEEEEEEEEE
T ss_pred CCceEEEEEEE
Confidence 98877666654
No 282
>2rik_A Titin; I-SET IG fold, poly-IG linear array, structural protein; 1.60A {Oryctolagus cuniculus} PDB: 2rjm_A
Probab=97.22 E-value=0.0002 Score=73.68 Aligned_cols=88 Identities=20% Similarity=0.327 Sum_probs=66.1
Q ss_pred CCccceeecccccccccccccccCCCcEEEeecCeeccCCCcccccccceeecccCcceeeeEEEEeeeccCCCCceeEe
Q psy12044 259 PSTFYLEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCV 338 (767)
Q Consensus 259 ~~~~~~~v~~G~~vsL~C~a~g~P~p~itW~~~g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~GtY~Cv 338 (767)
..+....+..|+.+.|.|.+.+.|.+.+.|.+++..+...... .... ......|.|.++...|.|.|.|.
T Consensus 10 ~~p~~~~~~~G~~v~l~C~~~g~p~~~v~W~~~~~~~~~~~~~-----~~~~-----~~~~~~L~i~~v~~~d~G~Y~C~ 79 (284)
T 2rik_A 10 LKPVSVDLALGESGTFKCHVTGTAPIKITWAKDNREIRPGGNY-----KMTL-----VENTATLTVLKVTKGDAGQYTCY 79 (284)
T ss_dssp ECCCCEEEETTCCEEEEEEEESSSCCEEEEEETTEECCSSSSE-----EEEE-----ETTEEEEEESSCCGGGCEEEEEE
T ss_pred ccccceEecCCCcEEEEEEEEcCCCCEEEEEECCEECcCCCcE-----EEEE-----cCCEEEEEEecCCcccCEEEEEE
Confidence 3344567889999999999999999999999988776432211 0111 11246899999999999999999
Q ss_pred eccCCCCcccceEEEEEe
Q psy12044 339 AENQAGSTSSNYTIRIVL 356 (767)
Q Consensus 339 A~N~~G~s~~s~sL~V~~ 356 (767)
+.|..|.....+.+.|..
T Consensus 80 ~~n~~g~~~~~~~l~V~~ 97 (284)
T 2rik_A 80 ASNVAGKDSCSAQLGVQE 97 (284)
T ss_dssp EEETTEEEEEEEEEEEEC
T ss_pred EEECCceEEEEEEEEccC
Confidence 999988876666666654
No 283
>2iep_A Muscle-specific kinase receptor; beta-sandwich, signaling protein,transferase; 2.21A {Rattus norvegicus}
Probab=97.21 E-value=0.00049 Score=66.11 Aligned_cols=89 Identities=20% Similarity=0.355 Sum_probs=63.5
Q ss_pred CCCCccceeecccccccccccccccCCCcEEEeecCeeccCCCcccccccceeecccCcceeeeEEEEeeeccCCCCcee
Q psy12044 257 ITPSTFYLEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFV 336 (767)
Q Consensus 257 i~~~~~~~~v~~G~~vsL~C~a~g~P~p~itW~~~g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~GtY~ 336 (767)
+........+..|+.+.|.|.+.+.|.+.+.|.+++..+..... .+.... ....|.|.++...|.|.|.
T Consensus 10 i~~~~~~~~~~~G~~v~l~C~~~~~p~~~i~W~~~~~~~~~~~~------~~~~~~-----~~~~L~i~~~~~~d~G~Y~ 78 (192)
T 2iep_A 10 ITTPLETVDALVEEVATFMCAVESYPQPEISWTRNKILIKLFDT------RYSIRE-----NGQLLTILSVEDSDDGIYC 78 (192)
T ss_dssp ESSCCCEEEEETTSCEEEECCEEEESCCEEEEEETTEECCTTCT------TEEEEG-----GGTEEEESSCCGGGCEEEE
T ss_pred eecCccceeeeCCCcEEEEeeCCCCCCCeEEEEECCEEccccCc------cEEEcC-----CccEEEEcCCCcccCeEEE
Confidence 33344456788999999999999999999999998876643211 111111 1246999999999999999
Q ss_pred EeeccCCCCc-ccceEEEEEe
Q psy12044 337 CVAENQAGST-SSNYTIRIVL 356 (767)
Q Consensus 337 CvA~N~~G~s-~~s~sL~V~~ 356 (767)
|.+.|..|.. ...+.+.+..
T Consensus 79 C~~~~~~~~~~~~~~~l~v~~ 99 (192)
T 2iep_A 79 CTANNGVGGAVESCGALQVKM 99 (192)
T ss_dssp EEEECSSSCCEEEEEEEEEEE
T ss_pred EEEEcCCCceeEeEEEEEEEe
Confidence 9999988774 3344555543
No 284
>1ry7_B FGFR-3, fibroblast growth factor receptor 3; FGF-FGFR complex, beta trefoil, IG domain, growth factor/growth factor receptor complex; 3.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4
Probab=97.20 E-value=0.00046 Score=72.87 Aligned_cols=92 Identities=23% Similarity=0.379 Sum_probs=65.2
Q ss_pred cceeecccccccccccccccCCCcEEEee----cCeeccCCCcccccccceeeccc-C---cceeeeEEEEeeeccCCCC
Q psy12044 262 FYLEIQEGKNVSLLCKVSAIPEAKITWLF----DGVPIQNESMSASESHAVYSTEE-G---TEIKKSELLIYNSNIDDNG 333 (767)
Q Consensus 262 ~~~~v~~G~~vsL~C~a~g~P~p~itW~~----~g~~l~~~s~~~~~~~~~~~~~~-g---~~~~~s~L~I~nvs~sD~G 333 (767)
....+..|..+.|.|.+.+.|.+.+.|.+ ++..+...... ....... + .....+.|.|.++...|.|
T Consensus 230 ~~~~~~~G~~v~l~C~~~g~p~p~v~W~~~~~~~g~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G 304 (334)
T 1ry7_B 230 ANQTAVLGSDVEFHCKVYSDAQPHIQWLKHVEVNGSKVGPDGTP-----YVTVLKTAGANTTDKELEVLSLHNVTFEDAG 304 (334)
T ss_dssp CCEEEESSCCEEECCCCBCSSCEEEEEEECCCGGGCSBCTTSSB-----CCCCCCCSSCSCSCTTCCCEEECSCCTTSCS
T ss_pred CceEEeCCCCEEEEEEEecCCCCeEEEEECCcCCCccccCCCCe-----eEEEeecCccccccccccEEEEccCCHHHCE
Confidence 34567889999999999999999999998 45444322110 0000100 0 0112347999999999999
Q ss_pred ceeEeeccCCCCcccceEEEEEeec
Q psy12044 334 TFVCVAENQAGSTSSNYTIRIVLKE 358 (767)
Q Consensus 334 tY~CvA~N~~G~s~~s~sL~V~~~~ 358 (767)
.|+|.|.|..|.....+.+.|...+
T Consensus 305 ~Y~C~a~N~~G~~~~~~~l~V~~~~ 329 (334)
T 1ry7_B 305 EYTCLAGNSIGFSHHSAWLVVLPAE 329 (334)
T ss_dssp EEEEEEEESSCCEEEEEEEEEECSC
T ss_pred EEEEEEeCCCCeEEEEEEEEEEECC
Confidence 9999999999998888877776543
No 285
>2y23_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin- like; 2.50A {Homo sapiens}
Probab=97.20 E-value=0.00019 Score=74.70 Aligned_cols=78 Identities=24% Similarity=0.334 Sum_probs=61.3
Q ss_pred eeecccccccccccccccCCC-cEEEeecCeeccCCCcccccccceeecccCcceeeeEEEEeeeccCCCCceeEeeccC
Q psy12044 264 LEIQEGKNVSLLCKVSAIPEA-KITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCVAENQ 342 (767)
Q Consensus 264 ~~v~~G~~vsL~C~a~g~P~p-~itW~~~g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~GtY~CvA~N~ 342 (767)
..+..|..+.|.|.+.+.|.+ .+.|.+++..+...... .. ......|.|.++..+|.|.|.|.|.|.
T Consensus 231 ~~v~~G~~~~l~C~~~~~p~~~~v~W~~~g~~~~~~~~~-------~~-----~~~~~~L~I~~v~~~d~G~Y~C~a~N~ 298 (312)
T 2y23_A 231 WEVTGECNVLLKCKVANIKKETHIVWYKDEREISVDEKH-------DF-----KDGICTLLITEFSKKDAGIYEVILKDD 298 (312)
T ss_dssp EEEETTTEEEEEEEEESCCSSCEEEEEETTEEEEEECCC----------------CEEEEEECSCSGGGCEEEEEEEEST
T ss_pred EEEeCCCEEEEEEEEcCCCCCCEEEEeeCCEECCCCCcE-------EE-----ECCEEEEEECcCCHHHCEEEEEEEEcC
Confidence 467799999999999999988 99999998777532111 00 122468999999999999999999999
Q ss_pred CCCcccceEEE
Q psy12044 343 AGSTSSNYTIR 353 (767)
Q Consensus 343 ~G~s~~s~sL~ 353 (767)
.|.....+.|.
T Consensus 299 ~G~~~~~~~l~ 309 (312)
T 2y23_A 299 RGKDKSRLKLV 309 (312)
T ss_dssp TCCEEEEEEEC
T ss_pred CCceeeeeEEE
Confidence 99887766554
No 286
>4dep_C Interleukin-1 receptor accessory protein; B-trefoil, immunoglobulin, immune system, extracellular; HET: NAG; 3.10A {Homo sapiens} PDB: 3o4o_B*
Probab=97.20 E-value=0.00015 Score=77.37 Aligned_cols=90 Identities=17% Similarity=0.301 Sum_probs=40.2
Q ss_pred eeccccccccccccc----ccCCCcEEEeecCeeccCCC-cccccccceeecccCcceeeeEEEEeeeccCCC-CceeEe
Q psy12044 265 EIQEGKNVSLLCKVS----AIPEAKITWLFDGVPIQNES-MSASESHAVYSTEEGTEIKKSELLIYNSNIDDN-GTFVCV 338 (767)
Q Consensus 265 ~v~~G~~vsL~C~a~----g~P~p~itW~~~g~~l~~~s-~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~-GtY~Cv 338 (767)
.+..|..+.|.|.+. +.|.+.+.|.+++..+.... ....... ......+.....+.|.|.++..+|. |.|.|.
T Consensus 237 ~v~~G~~v~l~C~~~~~~~g~p~p~v~W~~~g~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~L~i~~v~~~d~~G~Y~C~ 315 (349)
T 4dep_C 237 EKEPGEELLIPCTVYFSFLMDSRNEVWWTIDGKKPDDITIDVTINES-ISHSRTEDETRTQILSIKKVTSEDLKRSYVCH 315 (349)
T ss_dssp --------CCCEEEEECCCTTCCCEEEEESSCC--------CCCCEE-EECCTTCCEEEEECC-------------CEEE
T ss_pred EEecCCcEEEEEEEEEccCCCCCCEEEEEECCEEccccCCccccccc-eeeecCCCcEEEEEEEEeeccHHHcCCcEEEE
Confidence 677899999999998 57889999999887765411 1100000 0011112233456799999999999 999999
Q ss_pred eccCCCCcccceEEEEE
Q psy12044 339 AENQAGSTSSNYTIRIV 355 (767)
Q Consensus 339 A~N~~G~s~~s~sL~V~ 355 (767)
|.|..|.....+.+.|.
T Consensus 316 a~N~~G~~~~~~~l~v~ 332 (349)
T 4dep_C 316 ARSAKGEVAKAAKVKQK 332 (349)
T ss_dssp EECSSCEEEEECC----
T ss_pred EEcCCCcEEEEEEEeee
Confidence 99999998887777664
No 287
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.19 E-value=0.0001 Score=71.61 Aligned_cols=34 Identities=18% Similarity=0.223 Sum_probs=18.1
Q ss_pred CccEEEccCCCCCccCcccccCCCCCCEEEccCC
Q psy12044 76 NLQKIYLSRCRISVIDSKAFRGLTNLVDLDFSHN 109 (767)
Q Consensus 76 ~L~~L~Ls~N~L~~i~p~~f~~L~~L~~L~Ls~N 109 (767)
+|+.|+|++|.|+...-..+.++++|+.|+|++|
T Consensus 62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C 95 (176)
T 3e4g_A 62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKC 95 (176)
T ss_dssp CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESC
T ss_pred eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCC
Confidence 4555666665555443344455555555555555
No 288
>3grw_A Fibroblast growth factor receptor 3; FGFR3, protein-protein complex, receptor tyrosine kinas binding, immunoglobulin domain, kinase, membrane, nucleotid binding; HET: NAG; 2.10A {Homo sapiens}
Probab=97.18 E-value=0.00028 Score=70.64 Aligned_cols=85 Identities=24% Similarity=0.477 Sum_probs=64.8
Q ss_pred ceeecccccccccccccccCCCcEEEeecCeeccCCCcccccccceeecccCcceeeeEEEEeeeccCCCCceeEeeccC
Q psy12044 263 YLEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCVAENQ 342 (767)
Q Consensus 263 ~~~v~~G~~vsL~C~a~g~P~p~itW~~~g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~GtY~CvA~N~ 342 (767)
...+.+|+.+.|.|.+.+.|.+.+.|.+++..+....... ... .......|.|.++...|.|.|.|.+.|.
T Consensus 24 ~~~v~~G~~v~L~C~~~~~p~~~v~W~~~~~~~~~~~~~~----~~~-----~~~~~~~L~i~~v~~~d~G~Y~C~~~~~ 94 (241)
T 3grw_A 24 LLAVPAANTVRFRCPAAGNPTPSISWLKNGREFRGEHRIG----GIK-----LRHQQWSLVMESVVPSDRGNYTCVVENK 94 (241)
T ss_dssp EEEEETTSEEEEECCEECSSCCEEEEEETTEECCGGGSTT----CCE-----EEGGGTEEEECSCCGGGCEEEEEEEEET
T ss_pred ceEEcCCCeEEEEEEecCCCCceeEEEECCcccCCCCccc----cee-----eeccceEEEEEeCCcccCEEEEEEEeec
Confidence 4677899999999999999999999999887764322110 000 1122357999999999999999999999
Q ss_pred CCCcccceEEEEEe
Q psy12044 343 AGSTSSNYTIRIVL 356 (767)
Q Consensus 343 ~G~s~~s~sL~V~~ 356 (767)
.|.....+.+.|..
T Consensus 95 ~~~~~~~~~l~V~~ 108 (241)
T 3grw_A 95 FGSIRQTYTLDVLE 108 (241)
T ss_dssp TEEEEEEEEEEEEC
T ss_pred CCceEEEEEEEEec
Confidence 88877777777665
No 289
>1rhf_A Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3 family, cellular adhesion, ligand-independent DIME mutational analysis, transferase; HET: EPE; 1.96A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4
Probab=97.17 E-value=0.00031 Score=67.06 Aligned_cols=75 Identities=24% Similarity=0.338 Sum_probs=57.4
Q ss_pred ccceeecccccccccccccccCCC-cEEEeecCeeccCCCcccccccceeecccCcceeeeEEEEeeeccCCCCceeEee
Q psy12044 261 TFYLEIQEGKNVSLLCKVSAIPEA-KITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCVA 339 (767)
Q Consensus 261 ~~~~~v~~G~~vsL~C~a~g~P~p-~itW~~~g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~GtY~CvA 339 (767)
.....+..|..+.|.|.+.+.|.| .+.|.+++..+..... ....|.|.++ .|.|.|+|.|
T Consensus 105 ~~~~~~~~g~~~~l~C~~~g~p~p~~v~W~~~~~~~~~~~~-----------------~~~~L~i~~~--~d~G~Y~C~a 165 (182)
T 1rhf_A 105 PKDLAVPPNAPFQLSCEAVGPPEPVTIVWWRGTTKIGGPAP-----------------SPSVLNVTGV--TQSTMFSCEA 165 (182)
T ss_dssp CCCEEECTTCCEEEEEEEECSSSCCEEEEEETTEECSCSEE-----------------SSEEEEECCC--SSCEEEEEEE
T ss_pred CcceEecCCCEEEEEeEecCCCCCCEEEEEcCCeECCCCCC-----------------CceEEEEecc--ccCeEEEEEE
Confidence 344677889999999999999999 9999998876633211 3457888887 5899999999
Q ss_pred ccCCCCccc-ceEEEE
Q psy12044 340 ENQAGSTSS-NYTIRI 354 (767)
Q Consensus 340 ~N~~G~s~~-s~sL~V 354 (767)
.|..|...+ .+.+.|
T Consensus 166 ~N~~g~~~s~~~~l~V 181 (182)
T 1rhf_A 166 HNLKGLASSRTATVHL 181 (182)
T ss_dssp EETTEEEECCCEEEEE
T ss_pred ECCCCCcccceEEEEe
Confidence 999987743 555543
No 290
>3bp6_B Programmed cell death 1 ligand 2; PD-1, PD-L2, complex, costimulation, glycoprotein, immunoglo domain, membrane, transmembrane, receptor; 1.60A {Mus musculus} PDB: 3bp5_B 3rnq_B 3bov_A 3rnk_B
Probab=97.17 E-value=0.00039 Score=67.85 Aligned_cols=89 Identities=17% Similarity=0.163 Sum_probs=60.7
Q ss_pred cceeecccccccccccccccCC-----CcEEEeecCeeccCCCcccccccceeecccCcceeeeEEEEeeeccCCCCcee
Q psy12044 262 FYLEIQEGKNVSLLCKVSAIPE-----AKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFV 336 (767)
Q Consensus 262 ~~~~v~~G~~vsL~C~a~g~P~-----p~itW~~~g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~GtY~ 336 (767)
....+.+|+.+.|.|.+.+.+. +.+.|.+.+....... ....+...........|.|.++..+|.|.|.
T Consensus 10 ~~v~v~~G~~v~L~C~~~~~p~~~~~~~~v~W~k~~~~~~~~~------~r~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~ 83 (202)
T 3bp6_B 10 EVYTVDVGSSVSLECDFDRRECTELEGIRASLQKVENDTSLQS------ERATLLEEQLPLGKALFHIPSVQVRDSGQYR 83 (202)
T ss_dssp SEEEEETTSCEEEEEEECTTC---CTTEEEEEEECC--CCCBC------SSCEECGGGGGGTEEEEEECSCCGGGCEEEE
T ss_pred cCEEEeCCCcEEEEEEecCCCCCCccceEEEEEcCCCcccccC------CceEEeeccccCCeeEEEECCCCHHHCcEEE
Confidence 3567889999999999999876 8899999332221110 1111222222234578999999999999999
Q ss_pred EeeccCCCCcccceEEEEEe
Q psy12044 337 CVAENQAGSTSSNYTIRIVL 356 (767)
Q Consensus 337 CvA~N~~G~s~~s~sL~V~~ 356 (767)
|.+.|..|.....+.+.|..
T Consensus 84 C~~~~~~~~~~~~~~l~V~~ 103 (202)
T 3bp6_B 84 CLVICGAAWDYKYLTVKVKA 103 (202)
T ss_dssp EEEEETTEEEEEEEEEEEEB
T ss_pred EEEEeCCCcceEEEEEEecC
Confidence 99999888766666666554
No 291
>3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus norvegicus}
Probab=97.15 E-value=0.00015 Score=78.65 Aligned_cols=81 Identities=26% Similarity=0.403 Sum_probs=63.3
Q ss_pred cceeecccccccccccccccCCCcEEEeecCeeccCCCcccccccceeecccCcceeeeEEEEeeeccCCCCceeEeecc
Q psy12044 262 FYLEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCVAEN 341 (767)
Q Consensus 262 ~~~~v~~G~~vsL~C~a~g~P~p~itW~~~g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~GtY~CvA~N 341 (767)
....+..|..+.|.|.+.+.|.+.+.|.+++..+...... .. ...+.|.|.++...|.|.|.|.|.|
T Consensus 320 ~~~~~~~g~~v~l~C~~~g~p~p~v~W~~~g~~~~~~~~~-------~~------~~~~~L~i~~v~~~d~G~Y~C~a~N 386 (403)
T 3laf_A 320 SNLYAYESMDIEFECAVSGKPVPTVNWMKNGDVVIPSDYF-------QI------VGGSNLRILGVVKSDEGFYQCVAEN 386 (403)
T ss_dssp CCEECCTTCCEEECCEEEEESCCEEEEEETTEECCCSSSE-------EE------ETTTEEEESSCCGGGCEEEEEEEEE
T ss_pred cceEEecCCeEEEEEEEeeccCCEEEEEECCEECCCCCcE-------EE------ecCccEEEeccccccCEEEEEEEEc
Confidence 3455678999999999999999999999998776433211 11 1235699999999999999999999
Q ss_pred CCCCcccceEEEEE
Q psy12044 342 QAGSTSSNYTIRIV 355 (767)
Q Consensus 342 ~~G~s~~s~sL~V~ 355 (767)
..|.....+.+.|.
T Consensus 387 ~~G~~~~~~~l~V~ 400 (403)
T 3laf_A 387 EAGNAQSSAQLIVP 400 (403)
T ss_dssp TTEEEEEEEEEECC
T ss_pred CCceEEEEEEEEEe
Confidence 99988877766543
No 292
>3k0w_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1, isoform 2; hydrolase, immunoglobulin domain, nucleus, protease; 2.80A {Homo sapiens}
Probab=97.15 E-value=0.0005 Score=68.24 Aligned_cols=83 Identities=23% Similarity=0.350 Sum_probs=64.5
Q ss_pred CCCCCCccceeecccccccccccccccCCCcEEEeecCeeccCCCcccccccceeecccCcceeeeEEEEeeeccCCCCc
Q psy12044 255 PQITPSTFYLEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGT 334 (767)
Q Consensus 255 P~i~~~~~~~~v~~G~~vsL~C~a~g~P~p~itW~~~g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~Gt 334 (767)
+.+...+....+..|+.+.|.|.+.+.|.+.+.|++++..+... ....|.|.++...|.|.
T Consensus 19 ~~i~~~p~~~~v~~G~~v~L~C~~~~~p~~~v~W~~~~~~~~~~-------------------~~~~L~i~~v~~~d~G~ 79 (218)
T 3k0w_A 19 SKITVNPESKAVLAGQFVKLCCRATGHPFVQYQWFKMNKEIPNG-------------------NTSELIFNAVHVKDAGF 79 (218)
T ss_dssp CCEEECCCCEEEETTSBEEEECEETTTTSSEEEEEETTEECTTC-------------------CSSEEEETTCCGGGCEE
T ss_pred CEEEECCCCeEEeCCCcEEEEeeecCCCCCEEEEEECCEECCCC-------------------CCCEEEEccCChhhCeE
Confidence 34444555678889999999999999999999999987665322 13579999999999999
Q ss_pred eeEeeccCCCCc-ccceEEEEEe
Q psy12044 335 FVCVAENQAGST-SSNYTIRIVL 356 (767)
Q Consensus 335 Y~CvA~N~~G~s-~~s~sL~V~~ 356 (767)
|.|.+.|..|.. ...+.+.|..
T Consensus 80 Y~C~~~n~~~~~~s~~~~l~V~~ 102 (218)
T 3k0w_A 80 YVCRVNNNFTFEFSQWSQLDVCD 102 (218)
T ss_dssp EEEEEECTTCCEECCCEEEEEEC
T ss_pred eEEEEEcCCCCceeeEEEEEEEc
Confidence 999999987754 3345665554
No 293
>2yd9_A Receptor-type tyrosine-protein phosphatase S; hydrolase; HET: NAG B3P; 2.60A {Homo sapiens}
Probab=97.14 E-value=0.00022 Score=74.43 Aligned_cols=78 Identities=21% Similarity=0.364 Sum_probs=57.4
Q ss_pred ceeecccccccccccccccCCCcEEEeecCeeccCCCcccccccceeecccCcceeeeEEEEeeeccCCCCceeEeeccC
Q psy12044 263 YLEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCVAENQ 342 (767)
Q Consensus 263 ~~~v~~G~~vsL~C~a~g~P~p~itW~~~g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~GtY~CvA~N~ 342 (767)
...+..|..+.|.|.+.+.|.|.+.|.+++..+...... ......|.+.++ .|.|.|+|.|.|.
T Consensus 214 ~~~v~~G~~v~l~C~~~g~p~p~v~W~~~~~~l~~~~~~--------------~~~~~~L~i~~~--~d~G~Y~C~a~N~ 277 (304)
T 2yd9_A 214 SHEIMPGGNVNITCVAVGSPMPYVKWMQGAEDLTPEDDM--------------PVGRNVLELTDV--KDSANYTCVAMSS 277 (304)
T ss_dssp CBCCCTTCCEEEEEEEEEESCCEEEEEETTEECSCSSSC--------------CBSEEEEEECSC--CSCEEEEEEEEET
T ss_pred ceEEcCCCeEEEEEEEeeeCCCEEEEEECCEECCCcccc--------------cCCcEEEEEccc--ccCEEEEEEEEeC
Confidence 456788999999999999999999999998776543211 112234666555 6899999999999
Q ss_pred CCCcccceEEEEEe
Q psy12044 343 AGSTSSNYTIRIVL 356 (767)
Q Consensus 343 ~G~s~~s~sL~V~~ 356 (767)
.|.....+.+.|..
T Consensus 278 ~G~~~~~~~l~V~~ 291 (304)
T 2yd9_A 278 LGVIEAVAQITVKS 291 (304)
T ss_dssp TEEEEEEEEEC---
T ss_pred CCcEEEEEEEEEec
Confidence 99887776666554
No 294
>4fa8_A Secreted protein BARF1; immunoglobulin-like domains, 4-helix bundle fold, viral PROT cytokine complex; HET: NAG BMA; 2.20A {Human herpesvirus 4} PDB: 2ch8_A* 3uez_A* 4adf_A* 4adq_A*
Probab=97.13 E-value=0.00028 Score=70.16 Aligned_cols=91 Identities=16% Similarity=0.231 Sum_probs=61.0
Q ss_pred ceeecccccccccc---cccccCCCcEEEeecCeeccCCCcc--------ccc--ccceeecccCcceeeeEEEEeeecc
Q psy12044 263 YLEIQEGKNVSLLC---KVSAIPEAKITWLFDGVPIQNESMS--------ASE--SHAVYSTEEGTEIKKSELLIYNSNI 329 (767)
Q Consensus 263 ~~~v~~G~~vsL~C---~a~g~P~p~itW~~~g~~l~~~s~~--------~~~--~~~~~~~~~g~~~~~s~L~I~nvs~ 329 (767)
.+++..|+.++|.| .+.+.|.+.+.|++++......... ... ...+... .......|.|.++..
T Consensus 2 ~Vta~~Ge~v~L~C~~~~v~~~p~~~V~W~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~L~I~~v~~ 78 (203)
T 4fa8_A 2 AVTAFLGERVTLTSYWRRVSLGPEIEVSWFKLGPGEEQVLIGRMHHDVIFIEWPFRGFFDIH---RSANTFFLVVTAANI 78 (203)
T ss_dssp CCEEETTCCEEEEEECSSTTCSTTSEEEEEEEETTTEEEEEEEEETTEEEECGGGBTTEEEE---EETTEEEEEESSCCG
T ss_pred CeEEEcCCCEEEEeeeeccCCCCCcEEEEEEcCCCcceEEEEecCCceEEeeccccceEEEE---EcCCEEEEEEccCCH
Confidence 35678999999999 4678899999999865432111000 000 0000000 011245799999999
Q ss_pred CCCCceeEeeccCCCCcccceEEEEEe
Q psy12044 330 DDNGTFVCVAENQAGSTSSNYTIRIVL 356 (767)
Q Consensus 330 sD~GtY~CvA~N~~G~s~~s~sL~V~~ 356 (767)
+|.|.|.|.+.|..|.....+.+.|..
T Consensus 79 ~D~G~Y~C~a~n~~g~~~~~~~l~V~~ 105 (203)
T 4fa8_A 79 SHDGNYLCRMKLGETEVTKQEHLSVVK 105 (203)
T ss_dssp GGCEEEEEEEEETTEEEEEEEEEEEEE
T ss_pred HHCeEEEEEEEcCCCcEEEEEEEEecC
Confidence 999999999999988887777776654
No 295
>3r08_E T-cell surface glycoprotein CD3 epsilon chain; antibody, T-cell receptor, signalling, immune SY; 4.10A {Cricetulus migratorius}
Probab=97.13 E-value=0.00033 Score=59.17 Aligned_cols=59 Identities=20% Similarity=0.493 Sum_probs=47.1
Q ss_pred cceeecccccccccccccccCCCcEEEeecCeeccCCCcccccccceeecccCcceeeeEEEEeee-ccCCCCceeEeec
Q psy12044 262 FYLEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNS-NIDDNGTFVCVAE 340 (767)
Q Consensus 262 ~~~~v~~G~~vsL~C~a~g~P~p~itW~~~g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nv-s~sD~GtY~CvA~ 340 (767)
....+..|..++|.|.+.+.|. |+|.+++..+... ..+.|.|.++ ..+|.|.|+|.|.
T Consensus 7 ~~~v~~~G~~v~L~C~~~g~P~--i~W~kdg~~l~~~-------------------~~~~L~I~~v~~~~DsG~Y~C~A~ 65 (82)
T 3r08_E 7 EYKVSISGTSVELTCPLDSDEN--LKWEKNGQELPQK-------------------HDKHLVLQDFSEVEDSGYYVCYTP 65 (82)
T ss_dssp CCEEEEETTEEEEECSSCCCSS--CEEEETTEECTTC-------------------CSSCCBCCSCCTTTTCSCEEEECS
T ss_pred ceeEEEcCCeEEEEEECCCCCc--EEEEECCEECcCC-------------------CCCEEEECccCccCcCEEEEEEEc
Confidence 3455678999999999999984 9999998776432 1246889996 7899999999997
Q ss_pred c
Q psy12044 341 N 341 (767)
Q Consensus 341 N 341 (767)
+
T Consensus 66 t 66 (82)
T 3r08_E 66 A 66 (82)
T ss_dssp S
T ss_pred c
Confidence 6
No 296
>2oyp_A Hepatitis A virus cellular receptor 2; TIM-3, T-cell immunoglobulin mucin, signaling protein; 1.95A {Mus musculus} PDB: 3kaa_A*
Probab=97.13 E-value=0.00075 Score=58.85 Aligned_cols=92 Identities=18% Similarity=0.319 Sum_probs=57.2
Q ss_pred eeecccccccccccccccCC---CcEEEeecCeec--------c-CCC-cccccccceeecccCcceeeeEEEEeeeccC
Q psy12044 264 LEIQEGKNVSLLCKVSAIPE---AKITWLFDGVPI--------Q-NES-MSASESHAVYSTEEGTEIKKSELLIYNSNID 330 (767)
Q Consensus 264 ~~v~~G~~vsL~C~a~g~P~---p~itW~~~g~~l--------~-~~s-~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~s 330 (767)
+.+..|+.++|.|...+.+. ..+.|.+..... . ... ........+.+. .........|.|.++..+
T Consensus 4 v~~~~G~~v~L~C~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~g~~~~~~~~~r~~~~-~~~~~~~~sL~I~~v~~~ 82 (109)
T 2oyp_A 4 YKVEVGKNAYLPCSYTLPTSGTLVPMCWGKGFCPWSQCTNELLRTDERNVTYQKSSRYQLK-GDLNKGDVSLIIKNVTLD 82 (109)
T ss_dssp EEECTTSCEEECCBCCCCTTCCCCCEEEESSSCCSSSCSSEEEEECSSSEEEESCTTEEEC-SCGGGTBCCEEECSCCGG
T ss_pred EEEEcCCCEEEEEEeECCCCCCeEEEEEEecCCCCCCceeEEEEcCCcCccccccceEEEc-cCccCCcEeEEEccCCCh
Confidence 46778999999999877643 348999854210 0 000 000001111111 112233468999999999
Q ss_pred CCCceeEeeccCCCCcccceEEEEEe
Q psy12044 331 DNGTFVCVAENQAGSTSSNYTIRIVL 356 (767)
Q Consensus 331 D~GtY~CvA~N~~G~s~~s~sL~V~~ 356 (767)
|.|.|.|.+.+..+.....+.+.|.+
T Consensus 83 D~G~Y~C~v~~~~~~~~~~~~l~V~V 108 (109)
T 2oyp_A 83 DHGTYCCRIQFPGLMNDKKLELKLDI 108 (109)
T ss_dssp GCEEEEEEECCSSTTCCEEEEEEEEE
T ss_pred hCeEEEEEEEcCCcccceEEEEEEEe
Confidence 99999999999877666666665543
No 297
>2wv3_A Neuroplastin; igcam, membrane, glycoprotein, cell membrane, cell adhesion, transmembrane, disulfide bond, alternative splicing; HET: NAG; 1.95A {Rattus norvegicus}
Probab=97.11 E-value=0.00039 Score=67.07 Aligned_cols=77 Identities=21% Similarity=0.351 Sum_probs=59.9
Q ss_pred eeecc-cccccccccccccCC--CcEEEeecCeeccCCCcccccccceeecccCcceeeeEEEEeeeccCCCCceeEeec
Q psy12044 264 LEIQE-GKNVSLLCKVSAIPE--AKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCVAE 340 (767)
Q Consensus 264 ~~v~~-G~~vsL~C~a~g~P~--p~itW~~~g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~GtY~CvA~ 340 (767)
..+.+ |+.+.|.|.+.+.+. +.+.|.+++..+...... .....|.|.++...|.|.|.|.+.
T Consensus 12 ~~v~~~G~~v~l~C~~~~~~~~~~~v~W~~~~~~~~~~~~~---------------~~~~~L~i~~~~~~d~G~Y~C~~~ 76 (190)
T 2wv3_A 12 VIIRDSLLPVTLQCNLTSSSHTLMYSYWTKNGVELTATRKN---------------ASNMEYRINKPRAEDSGEYHCVYH 76 (190)
T ss_dssp EECCCSSSCEEEEEEEEECSSCEEEEEEEETTEECTTCCBC---------------CSEEEEEESSCCGGGCEEEEEEEE
T ss_pred EEEccCCceEEEEEEeccCCCCceEEEEEECCEECcccceE---------------eccEEEEEecCCcccCEEEEEEEE
Confidence 34445 999999999998887 899999988776543221 134689999999999999999999
Q ss_pred cCCCCcccceEEEEEe
Q psy12044 341 NQAGSTSSNYTIRIVL 356 (767)
Q Consensus 341 N~~G~s~~s~sL~V~~ 356 (767)
|. |.....+.+.|..
T Consensus 77 n~-~~~~~~~~l~V~~ 91 (190)
T 2wv3_A 77 FV-SAPKANATIEVKA 91 (190)
T ss_dssp ET-TEEEEEEEEEEEC
T ss_pred eC-CcccccEEEEEec
Confidence 98 7666666666654
No 298
>4fom_A Poliovirus receptor-related protein 3; immunoglobulin-like domain, IG domain, cell adhesion; HET: NAG BMA MAN FUC; 3.93A {Homo sapiens}
Probab=97.09 E-value=0.00017 Score=75.34 Aligned_cols=78 Identities=19% Similarity=0.253 Sum_probs=58.7
Q ss_pred eeecccccccccccccccCCC-cEEEeecCeeccCCCcccccccceeecccCcceeeeEEEEeeeccCCCCceeEeeccC
Q psy12044 264 LEIQEGKNVSLLCKVSAIPEA-KITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCVAENQ 342 (767)
Q Consensus 264 ~~v~~G~~vsL~C~a~g~P~p-~itW~~~g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~GtY~CvA~N~ 342 (767)
..+..|+.+.|.|.+.+.|.| .+.|.+++..+...... .....|.|.++..+|.|.|.|.|.|.
T Consensus 222 ~~~~~g~~v~l~C~~~g~P~p~~v~W~k~~~~~~~~~~~---------------~~~~~l~i~~v~~~d~G~Y~C~A~N~ 286 (308)
T 4fom_A 222 NWFVGRKGVNLKCNADANPPPFKSVWSRLDGQWPDGLLA---------------SDNTLHFVHPLTFNYSGVYICKVTNS 286 (308)
T ss_dssp CEETTCCSCEEECCEEEESCEEEEECCBSSSCCCSSCBC---------------STTEEECCSCCCSCCCSEEEEEEEET
T ss_pred eeeeccccEEEEEEEecCCCCcEEEEEECCeECCCcEEE---------------cCCeEEEECCCChhhCEEEEEEEEeC
Confidence 345567889999999999988 69999987655432211 11234667889999999999999999
Q ss_pred CCCcccceEEEEEe
Q psy12044 343 AGSTSSNYTIRIVL 356 (767)
Q Consensus 343 ~G~s~~s~sL~V~~ 356 (767)
.|.....+.+.|..
T Consensus 287 ~G~~~~~~~l~V~~ 300 (308)
T 4fom_A 287 LGQRSDQKVIYISD 300 (308)
T ss_dssp TEEEEEEEECCEEC
T ss_pred CCcEEEEEEEEEEc
Confidence 99887776665543
No 299
>1pko_A Myelin oligodendrocyte glycoprotein; IGV-domain, immune system; 1.45A {Rattus norvegicus} SCOP: b.1.1.1 PDB: 1pkq_E 3csp_A 1py9_A
Probab=97.09 E-value=0.0007 Score=62.38 Aligned_cols=94 Identities=15% Similarity=0.254 Sum_probs=59.2
Q ss_pred cceeecccccccccccccccC---CCcEEEeecCe--ecc---CCC-c----ccccccceeecccCcceeeeEEEEeeec
Q psy12044 262 FYLEIQEGKNVSLLCKVSAIP---EAKITWLFDGV--PIQ---NES-M----SASESHAVYSTEEGTEIKKSELLIYNSN 328 (767)
Q Consensus 262 ~~~~v~~G~~vsL~C~a~g~P---~p~itW~~~g~--~l~---~~s-~----~~~~~~~~~~~~~g~~~~~s~L~I~nvs 328 (767)
..+.+..|+.+.|.|.+...+ .+.+.|.+.+. .+. ... . ......++.+...........|.|.++.
T Consensus 14 ~~v~~~~G~~v~L~C~~~~~~~~~~~~v~W~~~~~~~~v~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~ 93 (139)
T 1pko_A 14 HPIRALVGDEAELPCRISPGKNATGMEVGWYRSPFSRVVHLYRNGKDQDAEQAPEYRGRTELLKESIGEGKVALRIQNVR 93 (139)
T ss_dssp SCEEEETTSCEEEEEEEESCCCCTTSEEEEEEC--CCEEEEEETTEECGGGSCSTTTTSEEEECTTGGGTEEEEEESSCC
T ss_pred CCEEEEeCCCEEEeeEccCCCCCCceEEEEEECCCCceEEEEeCCcccccccCcccCCceEEccccccCCeEEEEEccCC
Confidence 356788999999999987654 36899998653 111 000 0 0000111222222222345689999999
Q ss_pred cCCCCceeEeeccCCCCcccceEEEEE
Q psy12044 329 IDDNGTFVCVAENQAGSTSSNYTIRIV 355 (767)
Q Consensus 329 ~sD~GtY~CvA~N~~G~s~~s~sL~V~ 355 (767)
.+|.|.|.|.+.+..|.....+.|.|.
T Consensus 94 ~~D~G~Y~C~v~~~~~~~~~~~~L~V~ 120 (139)
T 1pko_A 94 FSDEGGYTCFFRDHSYQEEAAVELKVE 120 (139)
T ss_dssp GGGCEEEEEEEEETTEEEEEEEEEEEE
T ss_pred HHHCEEEEEEEEcCCCceEEEEEEEEe
Confidence 999999999999988765555666655
No 300
>2vr9_A Roundabout 1, ROBO; immunoglobulin-like domain, AXON guidance, cell adhesion, immunoglobulin domain; 3.2A {Drosophila melanogaster} PDB: 2vra_A*
Probab=97.07 E-value=0.00038 Score=68.53 Aligned_cols=95 Identities=26% Similarity=0.470 Sum_probs=63.7
Q ss_pred CCCCCccceeecccccccccccccccCCCcEEEeecCeeccCCCcccccccceeecccCcceeeeEEEEeeeccCCCCce
Q psy12044 256 QITPSTFYLEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTF 335 (767)
Q Consensus 256 ~i~~~~~~~~v~~G~~vsL~C~a~g~P~p~itW~~~g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~GtY 335 (767)
.+...+....+.+|+.+.|.|.+.+.|.+.+.|.+++..+...... ..... ...+ .....+.|.++...|.|.|
T Consensus 11 ~i~~~p~~~~v~~G~~v~L~C~~~g~p~~~v~W~~~g~~~~~~~~~---~~~~~-~~~~--~~~~~l~i~~v~~~d~G~Y 84 (217)
T 2vr9_A 11 RIIEHPTDLVVKKNEPATLNCKVEGKPEPTIEWFKDGEPVSTNEKK---SHRVQ-FKDG--ALFFYRTMQGKKEQDGGEY 84 (217)
T ss_dssp EEEECCCCEEECTTSCEEECCEEECSSCCEEEEEETTEECCCSSSS---SSEEE-CTTS--CEEESSCCBSSSCBCCEEE
T ss_pred EEecCCCceEEeCCCcEEEEEEcCCCCCCeEEEEECCcCccCCCcc---ceeEE-ecCC--ceEEEEEeccCCcccCceE
Confidence 3333445577889999999999999999999999988776543211 01011 1111 1122346788899999999
Q ss_pred eEeeccCCCCcc-cceEEEEEe
Q psy12044 336 VCVAENQAGSTS-SNYTIRIVL 356 (767)
Q Consensus 336 ~CvA~N~~G~s~-~s~sL~V~~ 356 (767)
.|.+.|..|... ..+.+.+..
T Consensus 85 ~C~~~n~~g~~~~~~~~l~v~~ 106 (217)
T 2vr9_A 85 WCVAKNRVGQAVSRHASLQIAV 106 (217)
T ss_dssp EEEEEETTEEEECCCEEEEECE
T ss_pred EEEEecCCCccccccceEEEEE
Confidence 999999887653 355555554
No 301
>1vca_A VCAM-D1,2, human vascular cell adhesion molecule-1; immunoglobulin superfamily, integrin-binding, cell adhesion protein; 1.80A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 PDB: 1ij9_A 1vsc_A
Probab=97.06 E-value=0.00065 Score=67.02 Aligned_cols=79 Identities=19% Similarity=0.257 Sum_probs=56.3
Q ss_pred eecccccccccccccccCCCcEEEeecCeeccCCCcccccccceeecccCcceeeeEEEEeeeccCCCCceeEeeccCCC
Q psy12044 265 EIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCVAENQAG 344 (767)
Q Consensus 265 ~v~~G~~vsL~C~a~g~P~p~itW~~~g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~GtY~CvA~N~~G 344 (767)
.+.+|+.+.|.|.+.+.|.|.+.|.+....... ..... ......|.|.++...|.|.|.|.|.|..|
T Consensus 12 ~~~~G~~v~L~C~~~g~P~p~i~W~~~~~~~~~--------~~~~~-----~~~~~~L~I~~v~~~D~G~Y~C~a~n~~~ 78 (202)
T 1vca_A 12 LAQIGDSVSLTCSTTGCESPFFSWRTQIDSPLN--------GKVTN-----EGTTSTLTMNPVSFGNEHSYLCTATCESR 78 (202)
T ss_dssp EEETTSCEEEEEEEESCSSCEEEEEETTCCCCS--------SEEEE-----ETTEEEEEESSCCGGGCSEEEEEEEETTE
T ss_pred EEcCCCcEEEEEeecCCCCCeEEEECCCCCCcc--------ceEEE-----cCCccEEEECcCCHHHCEEEEEEEEECCc
Confidence 345899999999999999999999873211000 00000 01234699999999999999999999988
Q ss_pred CcccceEEEEEe
Q psy12044 345 STSSNYTIRIVL 356 (767)
Q Consensus 345 ~s~~s~sL~V~~ 356 (767)
.....+.+.|..
T Consensus 79 ~~~~~~~l~V~~ 90 (202)
T 1vca_A 79 KLEKGIQVEIYS 90 (202)
T ss_dssp EEEEEEEEEEEB
T ss_pred eEeeEEEEEEEe
Confidence 766666666654
No 302
>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus}
Probab=97.05 E-value=0.00042 Score=79.76 Aligned_cols=87 Identities=22% Similarity=0.350 Sum_probs=66.0
Q ss_pred CccceeecccccccccccccccCCCcEEEeecCeeccCCCcccccccceeecccCcceeeeEEEEeeeccCCCCceeEee
Q psy12044 260 STFYLEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCVA 339 (767)
Q Consensus 260 ~~~~~~v~~G~~vsL~C~a~g~P~p~itW~~~g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~GtY~CvA 339 (767)
.+....+.+|..+.|.|.+.+.|.|.+.|.+++..+..... +..... .....|.|.++..+|.|.|.|.|
T Consensus 390 ~~~~~~~~~G~~v~l~C~~~g~P~p~v~W~k~g~~l~~~~~-------~~~~~~---~~~~~L~i~~v~~~D~G~Y~C~A 459 (570)
T 3b43_A 390 KPHPVETLKGADVHLECELQGTPPFQVSWHKDKRELRSGKK-------YKIMSE---NFLTSIHILNVDSADIGEYQCKA 459 (570)
T ss_dssp CCCCEEECTTCCEEEEEEEESSSSCCCEEEETTEECCSSSS-------EEEEEE---TTEEEEEECSCCGGGCEEEEEEE
T ss_pred CCCceeecCCCEEEEEEEEecCCCCEEEEEECCEECcCCCC-------EEEEEc---CCEEEEEECCCChhhCEEEEEEE
Confidence 34455677899999999999999999999999887653321 111111 12357999999999999999999
Q ss_pred ccCCCCcccceEEEEEe
Q psy12044 340 ENQAGSTSSNYTIRIVL 356 (767)
Q Consensus 340 ~N~~G~s~~s~sL~V~~ 356 (767)
.|..|.....+.+.+..
T Consensus 460 ~N~~G~~~~~~~l~v~~ 476 (570)
T 3b43_A 460 SNDVGSDTCVGSITLKA 476 (570)
T ss_dssp ECSSCEEEEEEEEEECC
T ss_pred EECCCeEEEEEEEEecc
Confidence 99999887776666543
No 303
>2fbo_J V1V2;, variable region-containing chitin-binding protein 3; immunoglobulin, VCBP, V-type, V SET, immune system; 1.85A {Branchiostoma floridae}
Probab=97.04 E-value=0.00028 Score=70.93 Aligned_cols=85 Identities=19% Similarity=0.384 Sum_probs=56.2
Q ss_pred ceeecccccccccccccccCCCcEEEeecCeeccCCCccc-------ccccceeeccc--Cc--ceeeeEEEEeeeccCC
Q psy12044 263 YLEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSA-------SESHAVYSTEE--GT--EIKKSELLIYNSNIDD 331 (767)
Q Consensus 263 ~~~v~~G~~vsL~C~a~g~P~p~itW~~~g~~l~~~s~~~-------~~~~~~~~~~~--g~--~~~~s~L~I~nvs~sD 331 (767)
...+.+|..+.|.|.+.+.|.|.+.|.+++..+....... ........... .. ......|.|.++..+|
T Consensus 145 ~~~v~~g~~v~L~C~~~g~p~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D 224 (250)
T 2fbo_J 145 VVQVDEGNDITMTCPCTDCANANVTWYTGPTFFENYETGTYQPLANKNQFGITWFSSEIAGRASFSGARNLVIRAAKITD 224 (250)
T ss_dssp EEECCTTCCEEECCCEESCTTCEEEEEEEEECSSCSSSCEEEEEEEECTTSCEEECTTTTTSEEEETTTEEEECSCCGGG
T ss_pred eEEecCCCcEEEEEEecCCCCCeeEEEeCCCcccccccCcceeEeccCCCCccccCceEecccccCCccEEEEecCCccc
Confidence 3556679999999999999999999999877664321100 00000000000 00 0123689999999999
Q ss_pred CCceeEeeccCCCCcc
Q psy12044 332 NGTFVCVAENQAGSTS 347 (767)
Q Consensus 332 ~GtY~CvA~N~~G~s~ 347 (767)
.|.|+|.|.|..|...
T Consensus 225 ~G~Y~C~a~N~~g~~g 240 (250)
T 2fbo_J 225 AGRVWCELATGQGELD 240 (250)
T ss_dssp CEEEEEEEESSSSGGG
T ss_pred CEEEEEEecCCccccC
Confidence 9999999999777443
No 304
>3jz7_A MCAR, CAR, coxsackievirus and adenovirus receptor homolog; cell adhesion molecule, immunoglobuline superfamily, alternative splicing, cell adhesion; 2.19A {Mus musculus} PDB: 3mj7_B* 2npl_X
Probab=97.04 E-value=0.00082 Score=65.40 Aligned_cols=97 Identities=19% Similarity=0.364 Sum_probs=63.8
Q ss_pred ccceeecccccccccccccccC----CCcEEEeecCeec----------cCCCccc----ccccceeecccCcceeeeEE
Q psy12044 261 TFYLEIQEGKNVSLLCKVSAIP----EAKITWLFDGVPI----------QNESMSA----SESHAVYSTEEGTEIKKSEL 322 (767)
Q Consensus 261 ~~~~~v~~G~~vsL~C~a~g~P----~p~itW~~~g~~l----------~~~s~~~----~~~~~~~~~~~g~~~~~s~L 322 (767)
...+.+.+|+.+.|.|.+.+.+ .+.+.|.+.+... .+..... .......+...........|
T Consensus 7 ~~~v~v~~G~~v~L~C~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~L 86 (214)
T 3jz7_A 7 EQRIEKAKGETAYLPCKFTLSPEDQGPLDIEWLISPSDNQIVDQVIILYSGDKIYDNYYPDLKGRVHFTSNDVKSGDASI 86 (214)
T ss_dssp EEEEEEETTSCEEECCBCCCCTTCCSCCEEEEEEEESSSSCCSEEEEEEETTEEECCCCGGGTTTEEESCSCGGGTBCCE
T ss_pred CceEEEecCCCEEEEEEEecCCCCCCcEEEEEEecCCCCCCCceEEEEEeCCeEccccCCccccceEEeccCccCCcccE
Confidence 3456788999999999999877 4699998832111 0100000 00111222222233345789
Q ss_pred EEeeeccCCCCceeEeeccCCCCcccceEEEEEee
Q psy12044 323 LIYNSNIDDNGTFVCVAENQAGSTSSNYTIRIVLK 357 (767)
Q Consensus 323 ~I~nvs~sD~GtY~CvA~N~~G~s~~s~sL~V~~~ 357 (767)
.|.++...|.|.|.|.+.|..|.....+.+.|...
T Consensus 87 ~i~~v~~~D~G~Y~C~~~~~~~~~~~~~~l~V~~~ 121 (214)
T 3jz7_A 87 NVTNLQLSDIGTYQCKVKKAPGVANKKFLLTVLVK 121 (214)
T ss_dssp EECSCCGGGCEEEEEEEEETTEEEEEEEEEEEECC
T ss_pred EEccCChhhCeEEEEEEEeCCCccccEEEEEEEcC
Confidence 99999999999999999998887766676666543
No 305
>3p2t_A Leukocyte immunoglobulin-like receptor subfamily 4; LILR, IG, inhibitory receptor, disulfide, immune system; 1.70A {Homo sapiens}
Probab=97.03 E-value=0.00051 Score=66.87 Aligned_cols=79 Identities=15% Similarity=0.201 Sum_probs=56.9
Q ss_pred eecccccccccccccccCCCcEEEeecCeeccCCCcccccccceeecccCcceeeeEEEEeeeccCCCCceeEeeccCCC
Q psy12044 265 EIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCVAENQAG 344 (767)
Q Consensus 265 ~v~~G~~vsL~C~a~g~P~p~itW~~~g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~GtY~CvA~N~~G 344 (767)
.+..|+.++|.|.+.+ +.+.+.|++++..+...... .........|.|.++..+|.|.|.|.+.|..|
T Consensus 15 ~v~~G~~v~L~C~~~~-~~~~~~w~k~g~~~~~~~~~-----------~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g 82 (196)
T 3p2t_A 15 VISWGNSVTIWCQGTL-EAREYRLDKEESPAPWDRQN-----------PLEPKNKARFSIPSMTEDYAGRYRCYYRSPVG 82 (196)
T ss_dssp EEETTCCEEEEEECCT-TCCEEEEEETTSCSCSEEEC-----------CCSSSSEEEEEESSCCGGGCEEEEEEEEETTE
T ss_pred cCCCCCcEEEEeeCCC-CCCEEEEEECCCCCcccccc-----------cccCCceEEEEeccCCcccCceEEEEEeCCCc
Confidence 5778999999999988 77899999987655321110 00012346799999999999999999999987
Q ss_pred Cc--ccceEEEEE
Q psy12044 345 ST--SSNYTIRIV 355 (767)
Q Consensus 345 ~s--~~s~sL~V~ 355 (767)
.. ...+.+.|.
T Consensus 83 ~~~~s~~~~l~V~ 95 (196)
T 3p2t_A 83 WSQPSDPLELVMT 95 (196)
T ss_dssp EBCCCCCEEEEEE
T ss_pred ccCCCccEEEEec
Confidence 33 334555554
No 306
>4f80_A Butyrophilin subfamily 3 member A1; B7 superfamily, CD277, immune system; 1.94A {Homo sapiens} PDB: 4f9l_A* 4f9p_A 4f8t_A 4f8q_A
Probab=97.03 E-value=0.0012 Score=65.78 Aligned_cols=90 Identities=17% Similarity=0.255 Sum_probs=58.2
Q ss_pred ceeecccccccccccccccCCC---cEEEeecCeecc-----CCC-----cccccccceeecccCcceeeeEEEEeeecc
Q psy12044 263 YLEIQEGKNVSLLCKVSAIPEA---KITWLFDGVPIQ-----NES-----MSASESHAVYSTEEGTEIKKSELLIYNSNI 329 (767)
Q Consensus 263 ~~~v~~G~~vsL~C~a~g~P~p---~itW~~~g~~l~-----~~s-----~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~ 329 (767)
.+.+..|+.+.|.|.+.+.+.+ .+.|.+++.... +.. .......+..............|.|.++..
T Consensus 13 pV~v~~G~~v~L~C~v~~~~~~~~~~V~W~k~~~~~~v~~~~~g~~~~~~~~~~~~~r~~~~~~~~~~~~~~L~I~~v~~ 92 (226)
T 4f80_A 13 PILAMVGEDADLPCHLFPTMSAETMELKWVSSSLRQVVNVYADGKEVEDRQSAPYRGRTSILRDGITAGKAALRIHNVTA 92 (226)
T ss_dssp CEEEETTSCEEEEEEEESCCCCTTSEEEEEETTTCCEEEEEETTEECGGGSCTTTTTTEEEECTTGGGTEEEEEESSCCG
T ss_pred CEEEEcCCcEEEEEEEECCCCCCceEEEEEECCCCceEEEEeCCeEcccccCccccceEEEecccccCCeEEEEEeeCch
Confidence 4567899999999998776554 689988542110 000 000011112223333444567899999999
Q ss_pred CCCCceeEeeccCCCCcccceEE
Q psy12044 330 DDNGTFVCVAENQAGSTSSNYTI 352 (767)
Q Consensus 330 sD~GtY~CvA~N~~G~s~~s~sL 352 (767)
+|.|.|.|.+.|..|.....+.+
T Consensus 93 ~D~G~Y~C~a~n~~~~~~~~v~~ 115 (226)
T 4f80_A 93 SDSGKYLCYFQDGDFYEKALVEL 115 (226)
T ss_dssp GGCEEEEEEEEETTEEEEEEEEE
T ss_pred HHCeeEEEEEECCCcEEEEEEEE
Confidence 99999999999987766554433
No 307
>2v9r_A Roundabout homolog 1; proto-oncogene, differentiation, phosphorylation, disease MU neuronal development, immunoglobulin domain, chemotaxis; 2.00A {Homo sapiens} PDB: 2v9q_A
Probab=97.01 E-value=0.00046 Score=67.37 Aligned_cols=96 Identities=22% Similarity=0.397 Sum_probs=63.3
Q ss_pred CCCccceeecccccccccccccccCCCcEEEeecCeeccCCCcccccccceeecccCcceeeeEEEEeeeccCCCCceeE
Q psy12044 258 TPSTFYLEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVC 337 (767)
Q Consensus 258 ~~~~~~~~v~~G~~vsL~C~a~g~P~p~itW~~~g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~GtY~C 337 (767)
...+....+.+|+.+.|.|.+.+.|.+.+.|.+++..+........ .. ......+ ......|.+.++...|.|.|.|
T Consensus 13 ~~~p~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~-~~-~~~~~~~-~~~~~~l~i~~~~~~d~G~Y~C 89 (212)
T 2v9r_A 13 VEHPSDLIVSKGEPATLNCKAEGRPTPTIEWYKGGERVETDKDDPR-SH-RMLLPSG-SLFFLRIVHGRKSRPDEGVYVC 89 (212)
T ss_dssp EECCCCEEECTTCCEEECCEEEEESCCEEEEEETTEECCCTTTCTT-CS-EEECTTS-CEEESSCCCCSSCCCSCEEEEE
T ss_pred ecCCCceEEeCCCcEEEEEEcCCCCCCEEEEEECCEEeeccccccc-cc-eEEecCC-cEEEEEEEecCCCcccCeEEEE
Confidence 3344456788999999999999999999999998877654322110 01 1111111 1112345566778999999999
Q ss_pred eeccCCCCc-ccceEEEEEe
Q psy12044 338 VAENQAGST-SSNYTIRIVL 356 (767)
Q Consensus 338 vA~N~~G~s-~~s~sL~V~~ 356 (767)
.+.|..|.. ...+.+.|..
T Consensus 90 ~~~n~~g~~~~~~~~l~V~~ 109 (212)
T 2v9r_A 90 VARNYLGEAVSHDASLEVAI 109 (212)
T ss_dssp EEEETTEEEECCCEEEEECE
T ss_pred EEECCCCceeecceEEEEEe
Confidence 999988765 3456666654
No 308
>3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, hematopoietic cytokine-receptor complex, cell surface, EXTR complex; 7.80A {Homo sapiens}
Probab=97.00 E-value=0.00051 Score=78.58 Aligned_cols=80 Identities=18% Similarity=0.281 Sum_probs=62.4
Q ss_pred ceeecccccccccccccccCCCcEEEeecCeeccCCCcccccccceeecccCcceeeeEEEEeeeccCCCCceeEeeccC
Q psy12044 263 YLEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCVAENQ 342 (767)
Q Consensus 263 ~~~v~~G~~vsL~C~a~g~P~p~itW~~~g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~GtY~CvA~N~ 342 (767)
...+.+|..+.|.|.+.+.|.|.+.|.+++..+...... ......|.|.++..+|.|.|+|.|.|.
T Consensus 335 ~~~v~~G~~v~L~C~~~g~P~p~i~W~k~g~~l~~~~~~--------------~~~~~~L~I~~v~~~D~G~YtC~A~N~ 400 (527)
T 3qs9_E 335 DYEIDQYEEFCFSVRFKAYPQIRCTWTFSRKSFPCEQKG--------------LDNGYSISKFCNHKHQPGEYIFHAEND 400 (527)
T ss_dssp EECCCTTCCCCEEEEEEEESCCEEEEEETTEEEECBCCB--------------CSSSSEEEEECCCTTCCSCEEEEEEET
T ss_pred cEEEcCCCeEEEEEEEEecCCCEEEEEECCEECcCCccc--------------ccCCcEEEEecCCcccCEEEEEEEEeC
Confidence 356778999999999999999999999998877543211 012346899999999999999999999
Q ss_pred CCCcccceEEEEEe
Q psy12044 343 AGSTSSNYTIRIVL 356 (767)
Q Consensus 343 ~G~s~~s~sL~V~~ 356 (767)
.|.....+.+.|..
T Consensus 401 ~g~~~~~~~L~V~~ 414 (527)
T 3qs9_E 401 DAQFTKMFTLNIRR 414 (527)
T ss_dssp TEEEEEEEEEC--C
T ss_pred CCcEEEEEEEEEec
Confidence 99887766666543
No 309
>1jbj_A CD3 epsilon and gamma ectodomain fragment complex; beta-sheet, C2-SET immunoglobulin superfamily, H-bonded G strand PAIR, single-chain; NMR {Mus musculus} SCOP: b.1.1.4 b.1.1.4 PDB: 1xmw_A
Probab=96.99 E-value=0.00041 Score=67.40 Aligned_cols=62 Identities=24% Similarity=0.418 Sum_probs=50.5
Q ss_pred eecccccccccccccccCCCcEEEeecCeeccCCCcccccccceeecccCcceeeeEEEEeeeccCCCCceeEeeccCCC
Q psy12044 265 EIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCVAENQAG 344 (767)
Q Consensus 265 ~v~~G~~vsL~C~a~g~P~p~itW~~~g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~GtY~CvA~N~~G 344 (767)
.+..|..+.|.|.+ |.|.+.|.+++..+..... ....|.|.++..+|.|.|+|.|.|..|
T Consensus 118 ~~~~G~~v~l~C~~---p~p~i~W~k~g~~i~~~~~-----------------~~~~L~i~~v~~~D~G~Y~C~a~N~~g 177 (186)
T 1jbj_A 118 GSRGDGSVLLTCGL---TDKTIKWLKDGSIISPLNA-----------------TKNTWNLGNNAKDPRGTYQCQGAKETS 177 (186)
T ss_dssp CCSSSCEEEEECSS---SCSCEEEEETTEECCCSSC-----------------CSSCCEEEETTSCCEEEEEEEESSCEE
T ss_pred ecCCCCeEEEEeeC---CCCeEEEEECCEECcccCC-----------------CcceEEECCCCcCcCEEEEEEEEcCcC
Confidence 34589999999998 8899999999887642211 235689999999999999999999887
Q ss_pred Cc
Q psy12044 345 ST 346 (767)
Q Consensus 345 ~s 346 (767)
..
T Consensus 178 ~~ 179 (186)
T 1jbj_A 178 NP 179 (186)
T ss_dssp EE
T ss_pred Cc
Confidence 64
No 310
>3bp6_B Programmed cell death 1 ligand 2; PD-1, PD-L2, complex, costimulation, glycoprotein, immunoglo domain, membrane, transmembrane, receptor; 1.60A {Mus musculus} PDB: 3bp5_B 3rnq_B 3bov_A 3rnk_B
Probab=96.99 E-value=0.00049 Score=67.06 Aligned_cols=79 Identities=20% Similarity=0.289 Sum_probs=56.5
Q ss_pred eecccccccccccccccCCCcEEEeecCeeccCCCcccccccceeecccCcceeeeEEEEeeeccCCCCceeEeeccCCC
Q psy12044 265 EIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCVAENQAG 344 (767)
Q Consensus 265 ~v~~G~~vsL~C~a~g~P~p~itW~~~g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~GtY~CvA~N~~G 344 (767)
.+..|..+.|.|.+.+.|.|.+.|.+++..+... ......+. ...+.+.++...|.|.|+|.|.|..|
T Consensus 114 ~~~~g~~v~l~C~~~g~P~p~v~W~~~~~~~~~~---------~~~~~~~~---~~~~~i~~v~~~d~G~Y~C~a~N~~g 181 (202)
T 3bp6_B 114 EVPGTGEVQLTCQARGYPLAEVSWQNVSVPANTS---------HIRTPEGL---YQVTSVLRLKPQPSRNFSCMFWNAHM 181 (202)
T ss_dssp ECTTTCCEEEEEEEEEBSCCEEEETTCCSCCEEE---------EEECTTSC---EEEEEEEEECCCTTCCEEEEEEETTT
T ss_pred ecCCCCeEEEEEEccccCCceEEEEeCCCCccCc---------eeeCCCCC---EEEEEEEEEEcCCCCEEEEEEEcCCc
Confidence 4567999999999999999999999866543210 01111111 23456778889999999999999999
Q ss_pred CcccceEEEEE
Q psy12044 345 STSSNYTIRIV 355 (767)
Q Consensus 345 ~s~~s~sL~V~ 355 (767)
.....+.+.+.
T Consensus 182 ~~~~~~~l~v~ 192 (202)
T 3bp6_B 182 KELTSAIIDPL 192 (202)
T ss_dssp TEEEEEEECC-
T ss_pred ccccEEEEEec
Confidence 88776665543
No 311
>1nbq_A JAM, junctional adhesion molecule 1, PAM-1; reovirus receptor, tight junction formation, immunoglobulin superfamily, immune system; 2.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 PDB: 3eoy_G
Probab=96.98 E-value=0.00032 Score=68.25 Aligned_cols=97 Identities=18% Similarity=0.356 Sum_probs=60.8
Q ss_pred CCCccceeecccccccccccccccCCCcEEEeecCeeccCCCcccccccceeecccCcceeeeEEEEeeeccCCCCceeE
Q psy12044 258 TPSTFYLEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVC 337 (767)
Q Consensus 258 ~~~~~~~~v~~G~~vsL~C~a~g~P~p~itW~~~g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~GtY~C 337 (767)
...+....+.+|+.+.|.|.+.+.|.+.+.|.+++..+........... .............|.|.++...|.|.|.|
T Consensus 8 ~~~~~~~~v~~G~~v~L~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~--~~~~~r~~~~~~~L~i~~~~~~d~G~Y~C 85 (209)
T 1nbq_A 8 HSSEPEVRIPENNPVKLSCAYSGFSSPRVEWKFDQGDTTRLVCYNNKIT--ASYEDRVTFLPTGITFKSVTREDTGTYTC 85 (209)
T ss_dssp ECSCSBCCEETTCCCEEECEEESCSSEEEEEEEEETTEEEESEETTEEC--TTTTTTCEEETTEEECSCCCTTSCSEEEE
T ss_pred EcCCCceEEEcCCCEEEEEEEeCCCCcEEEEEEcCCceeEEEEecCccC--ccccCceEeeccEEEEeeCCHHHCcEEEE
Confidence 3444566788999999999999999999999996544211000000000 00000111112679999999999999999
Q ss_pred eeccCCCCcccceEEEEEe
Q psy12044 338 VAENQAGSTSSNYTIRIVL 356 (767)
Q Consensus 338 vA~N~~G~s~~s~sL~V~~ 356 (767)
.+.+..|.......+.+.+
T Consensus 86 ~~~~~~g~~~~~~~~~l~V 104 (209)
T 1nbq_A 86 MVSEEGGNSYGEVKVKLIV 104 (209)
T ss_dssp EEEETTSSCEECCEEECCE
T ss_pred EEecCCCCccceEEEEEEE
Confidence 9999876444334444333
No 312
>1f2q_A High affinity immunoglobulin epsilon receptor ALP subunit; immunoglobulin fold, glycoprotein, IGE-binding Pro immune system; HET: NAG MAN; 2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1j86_A* 1rpq_A* 2y7q_A* 1f6a_A* 1j88_A* 1j89_A* 1j87_A*
Probab=96.97 E-value=0.00052 Score=65.53 Aligned_cols=75 Identities=20% Similarity=0.331 Sum_probs=55.3
Q ss_pred eeecccccccccccc-cccCCCcEEEeecCeeccCCCcccccccceeecccCcceeeeEEEEeeeccCCCCceeEeeccC
Q psy12044 264 LEIQEGKNVSLLCKV-SAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCVAENQ 342 (767)
Q Consensus 264 ~~v~~G~~vsL~C~a-~g~P~p~itW~~~g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~GtY~CvA~N~ 342 (767)
..+..|+.+.|.|.+ .+.|.+.+.|.+++..+... .....|.|.++..+|.|.|+|.+.|.
T Consensus 95 ~~~~~g~~~~l~C~~~~~~p~~~~~W~~~g~~~~~~------------------~~~~~L~i~~v~~~d~G~Y~C~a~n~ 156 (176)
T 1f2q_A 95 EVVMEGQPLFLRCHGWRNWDVYKVIYYKDGEALKYW------------------YENHNISITNATVEDSGTYYCTGKVW 156 (176)
T ss_dssp SEEETTSCEEEEEEEGGGCCEEEEEEEETTEECCSC------------------CCSSEEEESSCCGGGCEEEEEEEEET
T ss_pred ceeeCCCCEEEEEEecCCCCceEEEEEECCEEEeee------------------cCCCeEEECCCCcccCEEEEEEEEeC
Confidence 456789999999999 46677899999988766311 11357999999999999999999996
Q ss_pred CCC-cccceEEEEEe
Q psy12044 343 AGS-TSSNYTIRIVL 356 (767)
Q Consensus 343 ~G~-s~~s~sL~V~~ 356 (767)
.+. ....+.+.|..
T Consensus 157 ~~~~~s~~~~l~V~~ 171 (176)
T 1f2q_A 157 QLDYESEPLNITVIK 171 (176)
T ss_dssp TEEEECCCEEEEEEC
T ss_pred CcceEecCEEEEEec
Confidence 433 33345555543
No 313
>2v5t_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; phosphorylation, immunoglobulin domain, membrane, glycoprote adhesion, transmembrane; HET: NAG; 2.00A {Homo sapiens}
Probab=96.96 E-value=0.00048 Score=65.89 Aligned_cols=84 Identities=21% Similarity=0.413 Sum_probs=56.0
Q ss_pred ccceeecccccccccccccccCCCcEEEeecCeeccCCCcccccccceeecccCcceeeeEEEEeeeccCCCCceeEeec
Q psy12044 261 TFYLEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCVAE 340 (767)
Q Consensus 261 ~~~~~v~~G~~vsL~C~a~g~P~p~itW~~~g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~GtY~CvA~ 340 (767)
+....+.+|+.+.|.|.+.+.|.+.+.|.+++..+..... ..+... ..+.|.|.++...|.|.|.|.+.
T Consensus 9 ~~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~-----~~~~~~------~~~~L~i~~~~~~d~G~Y~C~~~ 77 (189)
T 2v5t_A 9 VSPQEFKQGEDAEVVCRVSSSPAPAVSWLYHNEEVTTISD-----NRFAML------ANNNLQILNINKSDEGIYRCEGR 77 (189)
T ss_dssp CSSEEEETTSCEEECCEEECSSCCEEEEEC-----CBCCC-----TTEEEC------TTSCEEETTCCGGGCEEEEEEEE
T ss_pred CCCEEEeCCCcEEEEEEEcCCCCCEEEEEECCccceeccC-----CeEEEe------cCCCEEEeeCCHhHCcEEEEEEE
Confidence 3456788999999999999999999999998765532110 111111 12469999999999999999999
Q ss_pred cCCCCcccceEEEEE
Q psy12044 341 NQAGSTSSNYTIRIV 355 (767)
Q Consensus 341 N~~G~s~~s~sL~V~ 355 (767)
+..+.......+.+.
T Consensus 78 ~~~~~~~~~~~~~l~ 92 (189)
T 2v5t_A 78 VEARGEIDFRDIIVI 92 (189)
T ss_dssp ETTTTEEEEEEEEEE
T ss_pred EcCCCceEEEEEEEE
Confidence 887654433333333
No 314
>2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor tyrosine kinase, growth factor cytoki dimerization, transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A*
Probab=96.95 E-value=0.00085 Score=75.91 Aligned_cols=89 Identities=17% Similarity=0.285 Sum_probs=67.4
Q ss_pred ceeecccccccccccccccCCCc-EEEeecCeeccCCCcccccccceeecccCcceeeeEEEEeeeccCCCCceeEeecc
Q psy12044 263 YLEIQEGKNVSLLCKVSAIPEAK-ITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCVAEN 341 (767)
Q Consensus 263 ~~~v~~G~~vsL~C~a~g~P~p~-itW~~~g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~GtY~CvA~N 341 (767)
...+..|..+.|.|.+.+.|.|. +.|.+++..+..... +.......+.....+.|.|.++..+|.|.|+|.|.|
T Consensus 322 ~~~v~~G~~v~l~C~~~g~P~p~~v~W~k~g~~~~~~~~-----~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N 396 (524)
T 2ec8_A 322 TVFVNDGENVDLIVEYEAFPKPEHQQWIYMNRTFTDKWE-----DYPKSENESNIRYVSELHLTRLKGTEGGTYTFLVSN 396 (524)
T ss_dssp EEEECTTCCEEEEEEEEEESCCCEEEEESSSCBCSSSBC-----CEESCCSSSCCEEEEEEEECSCCGGGCEEEEEEEEC
T ss_pred eEEEcCCCcEEEEEEEeecCCCcEEEEEECCeeccCCcc-----ceeEEccCCCceeEEEEEEeecCcccCeEEEEEEEe
Confidence 45678899999999999999999 999998876654321 111111122233567899999999999999999999
Q ss_pred CCCCcccceEEEEEe
Q psy12044 342 QAGSTSSNYTIRIVL 356 (767)
Q Consensus 342 ~~G~s~~s~sL~V~~ 356 (767)
..|.....+.+.|..
T Consensus 397 ~~g~~~~~~~l~V~~ 411 (524)
T 2ec8_A 397 SDVNAAIAFNVYVNT 411 (524)
T ss_dssp SSCEEEEEEEEEECE
T ss_pred cCceEEEEEEEEEec
Confidence 999977777776654
No 315
>3udw_C Poliovirus receptor; PVR tigit IGSF signal transduction immunology, IGSF, cell SU receptor signalling, glycosylation, membrane protein; HET: NAG; 2.90A {Homo sapiens}
Probab=96.94 E-value=0.001 Score=58.58 Aligned_cols=92 Identities=21% Similarity=0.335 Sum_probs=55.0
Q ss_pred eeecccccccccccc-cccCCCc----EEEeecCeeccCCCcc------cccccceeecccCccee--eeEEEEeeeccC
Q psy12044 264 LEIQEGKNVSLLCKV-SAIPEAK----ITWLFDGVPIQNESMS------ASESHAVYSTEEGTEIK--KSELLIYNSNID 330 (767)
Q Consensus 264 ~~v~~G~~vsL~C~a-~g~P~p~----itW~~~g~~l~~~s~~------~~~~~~~~~~~~g~~~~--~s~L~I~nvs~s 330 (767)
+.+..|+.++|.|.+ .+.+.+. +.|.+++....-.... .....+..+........ ...|.|.++..+
T Consensus 10 v~~~~G~~v~L~C~~~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~sL~I~~v~~~ 89 (118)
T 3udw_C 10 VPGFLGDSVTLPCYLQVPNMEVTHVSQLTWARHGESGSMAVFHQTQGPSYSESKRLEFVAARLGAELRNASLRMFGLRVE 89 (118)
T ss_dssp EEEETTSCEEECCEEECCTTCCCEEEEEEEEETTCSBCSEEEETTTEEEETTCSSEEETTCCTTSCCCBCCEEECSCCGG
T ss_pred EEEeeCCcEEEEEEeECCCCCCCceEEEEEEEcCCCceEEEEeCCCCCccCCcCcEEEecccccCCCCCcEEEEeecChH
Confidence 677899999999998 4444444 9999864211000000 00011122222111111 568999999999
Q ss_pred CCCceeEeecc-CCCCcccceEEEEE
Q psy12044 331 DNGTFVCVAEN-QAGSTSSNYTIRIV 355 (767)
Q Consensus 331 D~GtY~CvA~N-~~G~s~~s~sL~V~ 355 (767)
|.|.|.|.+.+ ..|.....+.|.|.
T Consensus 90 D~G~Y~C~v~~~~~~~~~~~~~L~V~ 115 (118)
T 3udw_C 90 DEGNYTCLFVTFPQGSRSVDIWLRVL 115 (118)
T ss_dssp GCEEEEEEEEEETTEEEEEEEEEEEE
T ss_pred HCeEEEEEEEECCCCCccceEEEEEE
Confidence 99999999988 55555555555444
No 316
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=96.94 E-value=0.00011 Score=71.56 Aligned_cols=38 Identities=26% Similarity=0.480 Sum_probs=19.8
Q ss_pred CccEEEeeCCCCCCCCchhhhccCCCCccEEEccCCC-CCc
Q psy12044 50 NTQVLDYTGNNLKTLHNEKFQKMGLVNLQKIYLSRCR-ISV 89 (767)
Q Consensus 50 ~L~~L~Ls~N~L~~l~~~~f~~~~L~~L~~L~Ls~N~-L~~ 89 (767)
.|+.|||+++.|+...-..+. ++++|+.|+|++|. |+.
T Consensus 62 ~L~~LDLs~~~Itd~GL~~L~--~~~~L~~L~L~~C~~ItD 100 (176)
T 3e4g_A 62 KIQAIDATDSCIMSIGFDHME--GLQYVEKIRLCKCHYIED 100 (176)
T ss_dssp CEEEEEEESCCCCGGGGGGGT--TCSCCCEEEEESCTTCCH
T ss_pred eEeEEeCcCCCccHHHHHHhc--CCCCCCEEEeCCCCccCH
Confidence 455666666655544333333 35566666666653 443
No 317
>1f97_A Junction adhesion molecule; immunoglobulin superfamily, beta-sandwich fold, cell adhesion; 2.50A {Mus musculus} SCOP: b.1.1.1 b.1.1.4
Probab=96.93 E-value=0.00042 Score=67.50 Aligned_cols=95 Identities=15% Similarity=0.330 Sum_probs=60.0
Q ss_pred CccceeecccccccccccccccCCCcEEEeecCeeccCCCcccccccceeecccCcceeeeEEEEeeeccCCCCceeEee
Q psy12044 260 STFYLEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCVA 339 (767)
Q Consensus 260 ~~~~~~v~~G~~vsL~C~a~g~P~p~itW~~~g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~GtY~CvA 339 (767)
.+....+.+|+.+.|.|.+.+.|.+.+.|.+++..+........... .............|.|.++...|.|.|.|.+
T Consensus 7 ~~~~~~v~~G~~v~L~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~--~~~~~r~~~~~~~L~i~~v~~~D~G~Y~C~~ 84 (212)
T 1f97_A 7 AQSDVQVPENESIKLTCTYSGFSSPRVEWKFVQGSTTALVCYNSQIT--APYADRVTFSSSGITFSSVTRKDNGEYTCMV 84 (212)
T ss_dssp SCSEEEEETTCCEEEECEEESCSSEEEEEEEEETTEEEEEEETTEEC--GGGTTTEEEETTEEEESCCCGGGCEEEEEEE
T ss_pred cCCCeEEEcCCCEEEEeEeCCCCCcEEEEEECCCceeeEEecCCccc--ccccCcEEeeceeEEEcccCcccCeEEEEEE
Confidence 34456788999999999999999999999996644211100000000 0000011112267999999999999999999
Q ss_pred ccCCCCcccceEEEEEe
Q psy12044 340 ENQAGSTSSNYTIRIVL 356 (767)
Q Consensus 340 ~N~~G~s~~s~sL~V~~ 356 (767)
.+..|.......+.+.+
T Consensus 85 ~~~~g~~~~~~~~~l~V 101 (212)
T 1f97_A 85 SEEGGQNYGEVSIHLTV 101 (212)
T ss_dssp EETTSSSEEEEEEEEEE
T ss_pred EccCCCcccEEEEEEEE
Confidence 99877433333333333
No 318
>4gjt_B Poliovirus receptor-related protein 4; six-bladed -propeller, IGV-like fold, viral entry, MV-H, NEC BETA4/BETA5 groove; HET: NAG; 3.10A {Homo sapiens}
Probab=96.92 E-value=0.0017 Score=58.74 Aligned_cols=94 Identities=16% Similarity=0.253 Sum_probs=55.8
Q ss_pred cceeecccccccccccccccCC---CcEEEeecCeecc-------CCC----cccccccceeecccCcceeeeEEEEeee
Q psy12044 262 FYLEIQEGKNVSLLCKVSAIPE---AKITWLFDGVPIQ-------NES----MSASESHAVYSTEEGTEIKKSELLIYNS 327 (767)
Q Consensus 262 ~~~~v~~G~~vsL~C~a~g~P~---p~itW~~~g~~l~-------~~s----~~~~~~~~~~~~~~g~~~~~s~L~I~nv 327 (767)
..+++..|+.++|.|...+.+. ..+.|.+...... ... .......++.+..........+|.|.++
T Consensus 8 ~~vtv~~G~~v~L~C~~~~~~~~~~~~V~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v 87 (123)
T 4gjt_B 8 DVVTVVLGQDAKLPCFYRGDSGEQVGQVAWARVDAGEGAQELALLHSKYGLHVSPAYEGRVEQPPPPRNPLDGSVLLRNA 87 (123)
T ss_dssp SEEECCTTSEEEECCEECCCTTCCEEEEEEEECCCSSCCCEEEEECSSSCCCBCGGGTTTEECCCSSCCTTBCCEEEESC
T ss_pred CEEEEEcCCCEEEEEEEeCCccCceeEEEEEEcCCCCCcceeEEEEecCCcEeCccceeEEEEecCCCcCCEEEEEECCC
Confidence 3567889999999999876554 3578987321110 000 0000011122222233334567999999
Q ss_pred ccCCCCceeEeecc-CCCCcccceEEEEE
Q psy12044 328 NIDDNGTFVCVAEN-QAGSTSSNYTIRIV 355 (767)
Q Consensus 328 s~sD~GtY~CvA~N-~~G~s~~s~sL~V~ 355 (767)
..+|.|.|.|.+.+ +.|.....+.|.|.
T Consensus 88 ~~~DsG~Y~C~v~t~~~g~~~~~~~L~Vl 116 (123)
T 4gjt_B 88 VQADEGEYECRVSTFPAGSFQARLRLRVL 116 (123)
T ss_dssp CSSSCSEEEEEEEESSSCEEEEEEEEEC-
T ss_pred ChHHCEEEEEEEEECCCCeEEeEEEEEEE
Confidence 99999999998755 45655555555443
No 319
>3u83_A Poliovirus receptor-related protein 1; nectin-1, hinge region plasiticity, cell adhesion; HET: PG6; 2.50A {Homo sapiens} PDB: 3alp_A* 3u82_B 4fmf_A* 3sku_E* 2l7j_A
Probab=96.91 E-value=0.00031 Score=74.04 Aligned_cols=77 Identities=25% Similarity=0.349 Sum_probs=61.1
Q ss_pred eeecccccccccccccccCCCc-EEEeecCeeccCCCcccccccceeecccCcceeeeEEEEe-eeccCCCCceeEeecc
Q psy12044 264 LEIQEGKNVSLLCKVSAIPEAK-ITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIY-NSNIDDNGTFVCVAEN 341 (767)
Q Consensus 264 ~~v~~G~~vsL~C~a~g~P~p~-itW~~~g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~-nvs~sD~GtY~CvA~N 341 (767)
..+..|..+.|.|.+.+.|.+. +.|.+++..+.... ....+.|.|. ++...|.|.|.|.|.|
T Consensus 242 ~~~~~g~~~~l~C~~~g~p~p~~i~W~~~~~~~~~~~----------------~~~~~~L~i~~~v~~~d~G~Y~C~a~N 305 (331)
T 3u83_A 242 NWYLQRMDVKLTCKADANPPATEYHWTTLNGSLPKGV----------------EAQNRTLFFKGPINYSLAGTYICEATN 305 (331)
T ss_dssp CCBTTCCCEEEEEEEEEESCCCEEEEEETTBSCCTTE----------------EEETTEEEECSCCCGGGCEEEEEEEEE
T ss_pred ceEeCCCeEEEEEeCcCCCCCCEEEEEECCCcccccc----------------eecCcEEEEeCCCccccCeEEEEEEEe
Confidence 3467899999999999999998 99999876653221 1123578999 8999999999999999
Q ss_pred CCCCcccceEEEEEe
Q psy12044 342 QAGSTSSNYTIRIVL 356 (767)
Q Consensus 342 ~~G~s~~s~sL~V~~ 356 (767)
..|.....+.+.|..
T Consensus 306 ~~G~~~~~~~l~V~~ 320 (331)
T 3u83_A 306 PIGTRSGQVEVNITE 320 (331)
T ss_dssp TTEEEEEEEEECCBC
T ss_pred ccccceEEEEEEEec
Confidence 999887766666554
No 320
>2e6q_A Obscurin-like protein 1; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=96.91 E-value=0.002 Score=57.80 Aligned_cols=90 Identities=12% Similarity=0.231 Sum_probs=58.5
Q ss_pred CCccceeecccccccccccccccCCCcEEEeecCeeccCCCcc---cccccceeecccCcceeeeEEEEeeeccCCCCce
Q psy12044 259 PSTFYLEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMS---ASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTF 335 (767)
Q Consensus 259 ~~~~~~~v~~G~~vsL~C~a~g~P~p~itW~~~g~~l~~~s~~---~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~GtY 335 (767)
......++.+|+.+.|.|.+.+ .+.+.|++++..+...... .+....+.....+ ....|.|.++..+|.|.|
T Consensus 13 ~~l~d~~v~eG~~a~f~C~vs~--~p~v~W~knG~~l~~~~~~~~~~~~~~r~~i~~~g---~~~~L~I~~v~~~D~G~Y 87 (112)
T 2e6q_A 13 AGLEDVQVYDGEDAVFSLDLST--IIQGTWFLNGEELKSNEPEGQVEPGALRYRIEQKG---LQHRLILHAVKHQDSGAL 87 (112)
T ss_dssp ECCCCEEEETTCEEEEEEEESS--CCCCEEEESSCBCCSSCCCTTSCTTSCEEEECCBT---TEEEEEEESCCSTTCSEE
T ss_pred cCCCCeEEcCCCcEEEEEEECC--CCeEEEEECCEECccCcccccccccccEEEEEeCC---cEEEEEECCCCHHHCccE
Confidence 3445678899999999999997 7889999999888654310 0011112222222 245799999999999999
Q ss_pred eEeeccCCCCcccceEEEEEe
Q psy12044 336 VCVAENQAGSTSSNYTIRIVL 356 (767)
Q Consensus 336 ~CvA~N~~G~s~~s~sL~V~~ 356 (767)
+|...+ ....+..|.|..
T Consensus 88 ~~~~~~---~~~ssA~L~V~~ 105 (112)
T 2e6q_A 88 VGFSCP---GVQDSAALTIQE 105 (112)
T ss_dssp EEEEET---TEEEEEEEEEEC
T ss_pred EEEEEC---CeeEEEEEEEeC
Confidence 774432 223445555543
No 321
>3r4d_A CEA-related cell adhesion molecule 1, isoform 1/2; immunoglobulin, beta-sandwich, mceacam1A - immunoglobulin FO spike NTD - galectin-like beta-sandwich fold; HET: NAG; 3.10A {Mus musculus} PDB: 1l6z_A*
Probab=96.90 E-value=0.00058 Score=66.61 Aligned_cols=70 Identities=27% Similarity=0.433 Sum_probs=54.6
Q ss_pred ecccccccccccccccCCCcEEEeecCeeccCCCcccccccceeecccCcceeeeEEEEeeeccCCCCceeEeeccCCCC
Q psy12044 266 IQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCVAENQAGS 345 (767)
Q Consensus 266 v~~G~~vsL~C~a~g~P~p~itW~~~g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~GtY~CvA~N~~G~ 345 (767)
+..|..+.|.|.+.+.| +.+.|.+++..+..... +.... ....|.|.++...|.|.|+|.+.|..|.
T Consensus 122 ~~~g~~v~l~C~~~~~p-p~i~W~~~g~~l~~~~~-------~~~~~-----~~~~L~i~~v~~~d~G~Y~C~a~N~~g~ 188 (208)
T 3r4d_A 122 VKELDSVTLTCLSNDIG-ANIQWLFNSQSLQLTER-------MTLSQ-----NNSILRIDPIKREDAGEYQCEISNPVSV 188 (208)
T ss_dssp CCTTCCEEEEEECSCTT-CEEEEEETTEECCCCSS-------EEEET-----TTTEEEESSCCGGGCEEEEEEEECTTCC
T ss_pred EeeCCCEEEEEECCCCC-CceEEEECCEeCCCCCC-------eEEcC-----CCCEEEEeccCHHhCeEEEEEEecCCCc
Confidence 67899999999999976 89999998877643221 11111 1257999999999999999999999998
Q ss_pred ccc
Q psy12044 346 TSS 348 (767)
Q Consensus 346 s~~ 348 (767)
..+
T Consensus 189 ~~s 191 (208)
T 3r4d_A 189 RRS 191 (208)
T ss_dssp EEC
T ss_pred ccC
Confidence 665
No 322
>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus}
Probab=96.89 E-value=0.00057 Score=78.61 Aligned_cols=83 Identities=18% Similarity=0.323 Sum_probs=62.4
Q ss_pred ceeecccccccccccccccCCCcEEEeecCeeccCCCcccccccceeecccCcceeeeEEEEeeeccCCCCceeEeeccC
Q psy12044 263 YLEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCVAENQ 342 (767)
Q Consensus 263 ~~~v~~G~~vsL~C~a~g~P~p~itW~~~g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~GtY~CvA~N~ 342 (767)
...+..|+.+.|.|.+.+.|.+.+.|++++..+..... .+.... ......|.|.++...|.|.|.|.|.|.
T Consensus 486 ~~~~~~g~~~~l~c~~~g~p~~~v~W~k~~~~~~~~~~------~~~~~~---~~~~~~L~i~~~~~~d~G~Y~C~a~N~ 556 (570)
T 3b43_A 486 DISTVVGEEVQLQATIEGAEPISVAWFKDKGEIVRESD------NIWISY---SENIATLQFSRAEPANAGKYTCQIKNE 556 (570)
T ss_dssp CBCCBTTCCEEEEEEEESCSSCCCEEEETTEECCCCTT------TEEECC---CSSEEEEEESSCCTTCCEEEEEEEECS
T ss_pred CceecCCCeEEEEEEEecCCCCEEEEEeCCeEeccCCC------eEEEEE---CCCEEEEEECcCCHHHCEEEEEEEEEC
Confidence 45567899999999999999999999998754422111 011111 112468999999999999999999999
Q ss_pred CCCcccceEEEE
Q psy12044 343 AGSTSSNYTIRI 354 (767)
Q Consensus 343 ~G~s~~s~sL~V 354 (767)
.|.....+.|.|
T Consensus 557 ~G~~~~~a~L~V 568 (570)
T 3b43_A 557 AGTQECFATLSV 568 (570)
T ss_dssp SCEEEEEEEECC
T ss_pred CcEEEEEEEEEE
Confidence 999888776654
No 323
>1jhl_L IGG1-kappa D11.15 FV (light chain); complex(antibody-antigen); 2.40A {Mus musculus} SCOP: b.1.1.1
Probab=96.89 E-value=0.0012 Score=58.11 Aligned_cols=79 Identities=16% Similarity=0.275 Sum_probs=52.2
Q ss_pred cceeecccccccccccccccCCCcEEEeecC--e---ecc-CCCccccc-ccceeecccCcceeeeEEEEeeeccCCCCc
Q psy12044 262 FYLEIQEGKNVSLLCKVSAIPEAKITWLFDG--V---PIQ-NESMSASE-SHAVYSTEEGTEIKKSELLIYNSNIDDNGT 334 (767)
Q Consensus 262 ~~~~v~~G~~vsL~C~a~g~P~p~itW~~~g--~---~l~-~~s~~~~~-~~~~~~~~~g~~~~~s~L~I~nvs~sD~Gt 334 (767)
..+.+.+|+.++|.|.+.+.+.+.+.|++.. . .+. ........ ...+.... ......|.|.++..+|.|.
T Consensus 9 ~~~~~~~G~~v~L~C~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~r~~~~~---~~~~~~L~I~~v~~~DsG~ 85 (108)
T 1jhl_L 9 SYLVASPGETITINCRASKSISKSLAWYQEKPGKTNNLLIYSGSTLQSGIPSRFSGSG---SGTDFTLTISSLEPEDFAM 85 (108)
T ss_dssp SEEEECTTSCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEE---SSSEEEEEECSCCTTCCSE
T ss_pred CeeEEcCCCCEEEEeEECCCCCceEEEEEECCCCCCEEEEEcCCCcCCCCCceEEEEe---cCCEEEEEECCCCHHHCEE
Confidence 3567889999999999999988999998843 1 111 10000000 11111111 1234689999999999999
Q ss_pred eeEeeccCC
Q psy12044 335 FVCVAENQA 343 (767)
Q Consensus 335 Y~CvA~N~~ 343 (767)
|.|.+.|..
T Consensus 86 Y~C~~~n~~ 94 (108)
T 1jhl_L 86 YICQQHNEY 94 (108)
T ss_dssp EEEEECSSS
T ss_pred EEEEEccCC
Confidence 999998863
No 324
>3sgj_C Human FCG3A receptor; receptor complex, FC receptor, antibody, immune system; HET: NAG BMA MAN FUC; 2.20A {Homo sapiens} PDB: 3sgk_C*
Probab=96.89 E-value=0.00094 Score=65.95 Aligned_cols=71 Identities=21% Similarity=0.476 Sum_probs=55.4
Q ss_pred ceeecccccccccccccccCCCc-EEEeecCeeccCCCcccccccceeecccCcceeeeEEEEeeeccCCCCceeEeecc
Q psy12044 263 YLEIQEGKNVSLLCKVSAIPEAK-ITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCVAEN 341 (767)
Q Consensus 263 ~~~v~~G~~vsL~C~a~g~P~p~-itW~~~g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~GtY~CvA~N 341 (767)
...+.+|+.+.|.|.+.+.+.+. +.|++++..+.... ..|.|.++..+|.|.|.|.+.|
T Consensus 16 ~~~v~~G~~v~L~C~~~~~p~~~~v~W~k~g~~l~~~~--------------------~~L~i~~v~~~D~G~Y~C~a~n 75 (204)
T 3sgj_C 16 WYRVLEKDSVTLKCQGAYSPEDQSTQWFHNESLISSQA--------------------SSYFIDAATVDDSGEYRCQTQL 75 (204)
T ss_dssp CSEEETTCCEEEEEECCSSSSCCCEEEEETTEEESCCS--------------------SEEEESSCCGGGCEEEEEEETT
T ss_pred CeEEECCCCEEEEEcCCCCCCCcEEEEEECCEEcccCc--------------------cEEEEecccccCCEEEEEEeCC
Confidence 35678999999999999998876 99999887654321 5799999999999999999998
Q ss_pred CCCCcccceEEEEE
Q psy12044 342 QAGSTSSNYTIRIV 355 (767)
Q Consensus 342 ~~G~s~~s~sL~V~ 355 (767)
.. ....+.+.|.
T Consensus 76 ~~--~s~~~~l~V~ 87 (204)
T 3sgj_C 76 ST--LSDPVQLEVH 87 (204)
T ss_dssp SB--CCCCEEEEEE
T ss_pred Cc--ccccEEEEEe
Confidence 43 3334555554
No 325
>3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor protein tyrosine phosphatase; HET: NAG; 2.00A {Mus musculus} PDB: 3jxa_A*
Probab=96.89 E-value=0.00075 Score=73.26 Aligned_cols=80 Identities=26% Similarity=0.412 Sum_probs=61.2
Q ss_pred ceeecccccccccccccccCCCcEEEeec-CeeccCCCcccccccceeecccCcceeeeEEEEeeeccCCCCceeEeecc
Q psy12044 263 YLEIQEGKNVSLLCKVSAIPEAKITWLFD-GVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCVAEN 341 (767)
Q Consensus 263 ~~~v~~G~~vsL~C~a~g~P~p~itW~~~-g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~GtY~CvA~N 341 (767)
...+.+|+.+.|.|.+.+.|.|.+.|.++ +..+..... . ....+.|.|.++..+|.|.|.|.|.|
T Consensus 214 ~~~~~~G~~v~l~C~~~g~P~p~i~W~k~~~~~~~~~~~---------~-----~~~~~~L~I~~v~~~D~G~Y~C~a~N 279 (384)
T 3kld_A 214 TVPAEKGTTVKLECFALGNPVPTILWRRADGKPIARKAR---------R-----HKSNGILEIPNFQQEDAGSYECVAEN 279 (384)
T ss_dssp EEEEETTSCEEEEEEEEEESCCEEEEEETTCCCCCTTCE---------E-----CTTSCEEEECSCCGGGCEEEEEEEEE
T ss_pred ceEecCCCcEEEEEEEeecCCCcEEEEeCCCccccccce---------e-----cCCCcEEEECCCChhhCEEEEEEEEc
Confidence 34567899999999999999999999984 333321110 0 01235799999999999999999999
Q ss_pred CCCCcccceEEEEEe
Q psy12044 342 QAGSTSSNYTIRIVL 356 (767)
Q Consensus 342 ~~G~s~~s~sL~V~~ 356 (767)
..|.......+.|..
T Consensus 280 ~~G~~~~~~~l~v~~ 294 (384)
T 3kld_A 280 SRGKNVAKGQLTFYA 294 (384)
T ss_dssp TTEEEEEEEEEEEEE
T ss_pred CCCeEEEEEEEEEec
Confidence 999887777776654
No 326
>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A
Probab=96.89 E-value=0.0011 Score=77.12 Aligned_cols=73 Identities=25% Similarity=0.503 Sum_probs=62.4
Q ss_pred ceeecccccccccccccccCCCcEEEeecCeeccCCCcccccccceeecccCcceeeeEEEEeeeccCCCCceeEeeccC
Q psy12044 263 YLEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCVAENQ 342 (767)
Q Consensus 263 ~~~v~~G~~vsL~C~a~g~P~p~itW~~~g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~GtY~CvA~N~ 342 (767)
...+..|+.+.|.|.+.+.|.+.+.|.+++..+.. ...|.|.++...|.|.|.|.|.|.
T Consensus 568 ~~~v~~g~~~~l~C~~~g~p~p~v~W~~~g~~i~~---------------------~~~L~i~~~~~~d~G~Y~C~a~N~ 626 (642)
T 1e07_A 568 DSSYLSGANLNLSCHSASNPSPQYSWRINGIPQQH---------------------TQVLFIAKITPNNNGTYACFVSNL 626 (642)
T ss_pred ceeEEcCCcEEEEEEeccCCCCeEEEEECCEECcc---------------------CceEEECcccccCCeEEEEEEEec
Confidence 45677899999999999999999999998876532 136899999999999999999999
Q ss_pred CCCcccceEEEEEe
Q psy12044 343 AGSTSSNYTIRIVL 356 (767)
Q Consensus 343 ~G~s~~s~sL~V~~ 356 (767)
.|....++.+.|.+
T Consensus 627 ~G~~~~s~~l~V~v 640 (642)
T 1e07_A 627 ATGRNNSIVKSITV 640 (642)
T ss_pred ccCcceeEEEEEEE
Confidence 99998888777665
No 327
>1ry7_B FGFR-3, fibroblast growth factor receptor 3; FGF-FGFR complex, beta trefoil, IG domain, growth factor/growth factor receptor complex; 3.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4
Probab=96.89 E-value=0.00099 Score=70.23 Aligned_cols=85 Identities=24% Similarity=0.491 Sum_probs=64.3
Q ss_pred eeecccccccccccccccCCCcEEEeecCeeccCCCcccccccceeecccCcceeeeEEEEeeeccCCCCceeEeeccCC
Q psy12044 264 LEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCVAENQA 343 (767)
Q Consensus 264 ~~v~~G~~vsL~C~a~g~P~p~itW~~~g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~GtY~CvA~N~~ 343 (767)
..+..|+.+.|.|.+.+.|.+.+.|.+++..+........ . ........|.|.++...|.|.|.|.+.|..
T Consensus 133 ~~v~~g~~v~l~C~~~g~p~~~v~W~~~~~~~~~~~~~~~----~-----~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~ 203 (334)
T 1ry7_B 133 LAVPAANTVRFRCPAAGNPTPSISWLKNGREFRGEHRIGG----I-----KLRHQQWSLVMESVVPSDRGNYTCVVENKF 203 (334)
T ss_dssp EEEETTCCEEEECCCCCSSCCEEECCBTTBCCCTTSSTTC----C-----CCCTTTTEEEECSCCGGGCCCEEEEEEETT
T ss_pred EEecCCCcEEEEEEccCCCCCeEEEEECCEECcccccccc----e-----ecccceEEEEECCCCcccCEEEEEEEEeCC
Confidence 4677899999999999999999999998876644322100 0 011123579999999999999999999999
Q ss_pred CCcccceEEEEEee
Q psy12044 344 GSTSSNYTIRIVLK 357 (767)
Q Consensus 344 G~s~~s~sL~V~~~ 357 (767)
|.....+.+.|...
T Consensus 204 g~~~~~~~l~V~~~ 217 (334)
T 1ry7_B 204 GSIRQTYTLDVLER 217 (334)
T ss_dssp EEEEEEEEEEEECC
T ss_pred CCEEEEEEEEEecC
Confidence 88777777776653
No 328
>3sgj_C Human FCG3A receptor; receptor complex, FC receptor, antibody, immune system; HET: NAG BMA MAN FUC; 2.20A {Homo sapiens} PDB: 3sgk_C*
Probab=96.88 E-value=0.00045 Score=68.34 Aligned_cols=75 Identities=20% Similarity=0.295 Sum_probs=55.5
Q ss_pred eeeccccccccccccccc-CCCcEEEeecCeeccCCCcccccccceeecccCcceeeeEEEEeeeccCCCCceeEeeccC
Q psy12044 264 LEIQEGKNVSLLCKVSAI-PEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCVAENQ 342 (767)
Q Consensus 264 ~~v~~G~~vsL~C~a~g~-P~p~itW~~~g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~GtY~CvA~N~ 342 (767)
..+.+|+.+.|.|.+.+. |.+.+.|.+++..+... .....|.|.++..+|.|.|+|.|.|.
T Consensus 98 ~~v~~G~~v~L~C~~~~~~p~~~v~W~k~g~~~~~~------------------~~~~~L~i~~v~~~D~G~Y~C~a~n~ 159 (204)
T 3sgj_C 98 WVFKEEDPIHLRCHSWKNTALHKVTYLQNGKGRKYF------------------HHNSDFYIPKATLKDSGSYFCRGLVG 159 (204)
T ss_dssp SEEETTCCEEEEEEEGGGCCCEEEEEEETTEEEEEE------------------EECCCEEESSCCGGGCEEEEEEEEET
T ss_pred eeEeCCCcEEEEEEecCCCCCceEEEEECCcEeecc------------------cCCceEEECcCCcccCEEEEEEEEeC
Confidence 456789999999999665 66899999988764211 12357999999999999999999994
Q ss_pred -CCCcccceEEEEEe
Q psy12044 343 -AGSTSSNYTIRIVL 356 (767)
Q Consensus 343 -~G~s~~s~sL~V~~ 356 (767)
.+.....+.+.|..
T Consensus 160 ~~~~~s~~~~l~V~~ 174 (204)
T 3sgj_C 160 SKNVSSETVQITITQ 174 (204)
T ss_dssp TEEEECCCEEEEEEC
T ss_pred CCceecCcEEEEEeC
Confidence 44444455555543
No 329
>3mj6_A Junctional adhesion molecule-like; immunoglobulin tandem domain, cell adhesion, cell junction, glycoprotein, immunoglobulin domain, membrane; HET: NAG FUC; 2.19A {Mus musculus} PDB: 3mj7_A* 3mj9_A*
Probab=96.87 E-value=0.00095 Score=67.97 Aligned_cols=94 Identities=14% Similarity=0.303 Sum_probs=62.1
Q ss_pred ceeecccccccccccc---cccCCCcEEEeec-CeeccCCCcc-------------ccccc-ceeecccCcceeeeEEEE
Q psy12044 263 YLEIQEGKNVSLLCKV---SAIPEAKITWLFD-GVPIQNESMS-------------ASESH-AVYSTEEGTEIKKSELLI 324 (767)
Q Consensus 263 ~~~v~~G~~vsL~C~a---~g~P~p~itW~~~-g~~l~~~s~~-------------~~~~~-~~~~~~~g~~~~~s~L~I 324 (767)
...+..|..+.|.|.+ .+.|.+.+.|.++ +......... ..... .... ........+.|.|
T Consensus 127 ~~~v~~G~~v~L~C~~~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~-~~~~~~~~~~L~i 205 (268)
T 3mj6_A 127 DLRVRVGDTTQMRCSIQSTEEKRVTKVNWMFSSGSHTEEETVLSYDSNMRSGKFQSLGRFRNRVDL-TGDISRNDGSIKL 205 (268)
T ss_dssp EEEEETTCCEEECCBCEESSSSCCCEEEEEEECTTCSSCEEEEEEETTSSSCEEECSSTTTTTEEE-CSCGGGTBCCEEE
T ss_pred ccccccCCcEEEEEEecCCCCCCccceEEEecCCCCCcceeEEEecCCCCccccccccccccceEe-eccCCCCeEEEEE
Confidence 5677899999999999 6779999999984 3211111000 00000 0000 1111234568999
Q ss_pred eeeccCCCCceeEeeccCCCCcccceEEEEEee
Q psy12044 325 YNSNIDDNGTFVCVAENQAGSTSSNYTIRIVLK 357 (767)
Q Consensus 325 ~nvs~sD~GtY~CvA~N~~G~s~~s~sL~V~~~ 357 (767)
.++..+|.|.|+|.|.|..|.....+.+.|...
T Consensus 206 ~~v~~~D~G~Y~C~a~n~~g~~~~~~~l~V~~~ 238 (268)
T 3mj6_A 206 QTVKESDQGIYTCSIYVGKLESRKTIVLHVVQD 238 (268)
T ss_dssp CSCCGGGCEEEEEEEEETTEEEEEEEEEEEECC
T ss_pred CcCChhhCeEEEEEEEcCCceEEEEEEEEEEcC
Confidence 999999999999999998888777777776543
No 330
>2or8_A Hepatitis A virus cellular receptor 1 homolog; beta barrel, immunoglobulin fold, IGV domain, TIM, immune system; 2.50A {Mus musculus}
Probab=96.87 E-value=0.0028 Score=56.07 Aligned_cols=94 Identities=19% Similarity=0.189 Sum_probs=56.1
Q ss_pred cceeecccccccccccccc-cCCCcEEEeecCee--------ccCC-C-cccccccceeecccCcceeeeEEEEeeeccC
Q psy12044 262 FYLEIQEGKNVSLLCKVSA-IPEAKITWLFDGVP--------IQNE-S-MSASESHAVYSTEEGTEIKKSELLIYNSNID 330 (767)
Q Consensus 262 ~~~~v~~G~~vsL~C~a~g-~P~p~itW~~~g~~--------l~~~-s-~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~s 330 (767)
..+.+.+|+.++|.|.... .....+.|.+.... +... . ........+.+. .........|.|.++..+
T Consensus 5 ~~v~~~~G~~v~L~C~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~-~~~~~~~~sL~I~~v~~~ 83 (116)
T 2or8_A 5 VEVKGVVGHPVTLPCTYSTYRGITTTCWGRGQCPSSACQNTLIWTNGHRVTYQKSSRYNLK-GHISEGDVSLTIENSVES 83 (116)
T ss_dssp EEEEEETTSCEEECCBCCCTTCCCCEEEEESCCCSSSCTTEEEEECSSSEEEESSTTEECC-SCGGGTBCCEEESSCCGG
T ss_pred ceEEEEeCCcEEEEEEeeCCCCCcEEEEEEECCCCCCceEEEEEeCCcccCcCCCCeEEEe-cCCCCCeEEEEECCCCcc
Confidence 3567889999999999865 34567999985411 0000 0 000001111111 112233467999999999
Q ss_pred CCCceeEeeccCCCCcccceEEEEEe
Q psy12044 331 DNGTFVCVAENQAGSTSSNYTIRIVL 356 (767)
Q Consensus 331 D~GtY~CvA~N~~G~s~~s~sL~V~~ 356 (767)
|.|.|.|.+.+..+.......+.+.+
T Consensus 84 DsG~Y~C~v~~~~~~~~~~~~~~l~V 109 (116)
T 2or8_A 84 DSGLYCCRVEIPGWFNDQKVTFSLQV 109 (116)
T ss_dssp GCEEEEEEECCSSTTCCEEEEEEEEE
T ss_pred cCEEEEEEEEcCCcccccEEEEEEEE
Confidence 99999999998765442244444444
No 331
>3ry4_A Low affinity immunoglobulin gamma FC region recep; FC receptor, CD32, immunoglobulin superfamily, low responder polymorphism, cell membrane; HET: NAG; 1.50A {Homo sapiens} PDB: 1fcg_A 3ry5_A 1h9v_A 3d5o_F* 3ry6_C* 2fcb_A
Probab=96.86 E-value=0.00062 Score=64.28 Aligned_cols=64 Identities=23% Similarity=0.378 Sum_probs=50.9
Q ss_pred eeecccccccccccc-cccCCCcEEEeecCeeccCCCcccccccceeecccCcceeeeEEEEeeeccCCCCceeEeeccC
Q psy12044 264 LEIQEGKNVSLLCKV-SAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCVAENQ 342 (767)
Q Consensus 264 ~~v~~G~~vsL~C~a-~g~P~p~itW~~~g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~GtY~CvA~N~ 342 (767)
..+.+|..+.|.|.+ .+.|.+.+.|.+++..+... .....|.|.++...|.|.|.|.+.|.
T Consensus 95 ~~~~~g~~~~l~C~~~~~~p~~~~~W~~~g~~~~~~------------------~~~~~L~i~~v~~~d~G~Y~C~a~n~ 156 (170)
T 3ry4_A 95 LEFQEGETIMLRCHSWKDKPLVKVTFFQNGKSQKFS------------------HLDPTFSIPQANHSHSGDYHCTGNIG 156 (170)
T ss_dssp SEECTTCCEEEEEEEGGGCCEEEEEEEETTEEEEEE------------------SSCCEEEESSCCGGGCEEEEEEEEET
T ss_pred ceeecCCeEEEEEECCCCCCCceEEEEECCeEcccc------------------CCCCeEEEEeccccCCEEEEEEEEeC
Confidence 356789999999999 45677999999988765311 11346899999999999999999998
Q ss_pred CCC
Q psy12044 343 AGS 345 (767)
Q Consensus 343 ~G~ 345 (767)
.|.
T Consensus 157 ~g~ 159 (170)
T 3ry4_A 157 YTL 159 (170)
T ss_dssp TEE
T ss_pred cCc
Confidence 875
No 332
>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R
Probab=96.86 E-value=0.00017 Score=85.62 Aligned_cols=87 Identities=20% Similarity=0.276 Sum_probs=0.0
Q ss_pred cceeecccccccccccccccCCCcEEEeecCeeccCCCcccccccceeecccCcceeeeEEEEeeeccCCCCceeEeecc
Q psy12044 262 FYLEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCVAEN 341 (767)
Q Consensus 262 ~~~~v~~G~~vsL~C~a~g~P~p~itW~~~g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~GtY~CvA~N 341 (767)
....+..|+.+.|.|.+.+.|.|.+.|++++..+...... .. ....+.|.|.++..+|.|.|.|.|.|
T Consensus 674 ~~~~v~~g~~~~l~C~~~g~P~p~v~W~k~g~~l~~~~~~-------~~-----~~~~~~L~I~~v~~~D~G~Y~C~a~N 741 (772)
T 3v2a_R 674 ENQTTSIGESIEVSCTASGNPPPQIMWFKDNETLVEDSGI-------VL-----KDGNRNLTIRRVRKEDEGLYTCQACS 741 (772)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CceEEeCCCCEEEEEEeCccCCCeEEEEECCeECcCCCCe-------EE-----cCCCcEEEECcCCHHHCEEEEEEEEe
Confidence 3456778999999999999999999999988766543211 00 11246799999999999999999999
Q ss_pred CCCCcccceEEEEEeeccc
Q psy12044 342 QAGSTSSNYTIRIVLKEEN 360 (767)
Q Consensus 342 ~~G~s~~s~sL~V~~~~~p 360 (767)
..|.....+.+.|...+..
T Consensus 742 ~~G~~~~~~~l~V~~~p~~ 760 (772)
T 3v2a_R 742 VLGCAKVEAFFIIEGAQEK 760 (772)
T ss_dssp -------------------
T ss_pred CCcceeEEEEEEEECCCCc
Confidence 9999999888887765443
No 333
>3o4o_C Interleukin-1 receptor type 2; cytokine-receptor complex, beta-trefoil, IG-like fold, immun; HET: NAG; 3.30A {Homo sapiens}
Probab=96.85 E-value=0.00063 Score=72.06 Aligned_cols=97 Identities=18% Similarity=0.275 Sum_probs=66.5
Q ss_pred CCCCccceeecccccccccccc---cccC-CCcEEEeecCeeccCCCccc--ccccceeecccCcceeeeEEEEeeeccC
Q psy12044 257 ITPSTFYLEIQEGKNVSLLCKV---SAIP-EAKITWLFDGVPIQNESMSA--SESHAVYSTEEGTEIKKSELLIYNSNID 330 (767)
Q Consensus 257 i~~~~~~~~v~~G~~vsL~C~a---~g~P-~p~itW~~~g~~l~~~s~~~--~~~~~~~~~~~g~~~~~s~L~I~nvs~s 330 (767)
+........+..|..+.|.|.+ .+.| .+.+.|.+++..+....... ...........+.....+.|.|.++..+
T Consensus 229 i~~~~~~~~v~~G~~v~L~C~~~~~~g~P~~~~v~W~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~L~i~~v~~~ 308 (339)
T 3o4o_C 229 IISPLKTISASLGSRLTIPCKVFLGTGTPLTTMLWWTANDTHIESAYPGGRVTEGPRQEYSENNENYIEVPLIFDPVTRE 308 (339)
T ss_dssp ECCCSCCCCCCCCSCCCCCCCEEESSSCCSSCEEEEESSSSCSSSSSCSSSCEECCCEECCCSSSCEEEECCEECSSCCC
T ss_pred EecCCceeEeccCCCEEEEEEEECCCCCCCCceEEEEECCeecccccccccceecceEEecccCceEEEEEEEEEEechh
Confidence 3333445567889999999999 8999 88999998887654321110 0011122223333334557999999999
Q ss_pred CC-CceeEeeccCCCCcccceEEE
Q psy12044 331 DN-GTFVCVAENQAGSTSSNYTIR 353 (767)
Q Consensus 331 D~-GtY~CvA~N~~G~s~~s~sL~ 353 (767)
|. |.|.|.|.|..|.......+.
T Consensus 309 d~~G~Y~C~a~N~~G~~~~~~~~~ 332 (339)
T 3o4o_C 309 DLHMDFKCVVHNTLSFQTLRTTVK 332 (339)
T ss_dssp SCCCCCEEEEEETTEEECCBCCCC
T ss_pred hcCccEEEEEEeccCceEEEEEhh
Confidence 97 999999999999887765443
No 334
>3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, CY receptor complex, extracellular complex; HET: NAG; 4.30A {Homo sapiens}
Probab=96.83 E-value=0.00089 Score=74.25 Aligned_cols=82 Identities=17% Similarity=0.294 Sum_probs=57.6
Q ss_pred ceeecccccccccccccccCCCcEEEeecCeeccCCCcccccccceeecccCcceeeeEEEEeeeccCCCCceeEeeccC
Q psy12044 263 YLEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCVAENQ 342 (767)
Q Consensus 263 ~~~v~~G~~vsL~C~a~g~P~p~itW~~~g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~GtY~CvA~N~ 342 (767)
...+.+|+.+.|.|.+.+.|.|.++|.+++..+......... ...+........|.|.|+|.|.|.
T Consensus 335 ~~~v~~G~~v~l~C~~~g~P~p~i~W~k~g~~l~~~~~~~~~--------------~~~~~~~~~~~~D~G~YtC~A~N~ 400 (423)
T 3qs7_E 335 DYEIDQYEEFCFSVRFKAYPQIRCTWTFSRKSFPCEQKGLDN--------------GYSISKFCNHKHQPGEYIFHAEND 400 (423)
T ss_dssp EECCCTTCCCCEEEEEEEESCCEEEEEETTEEEECBCCBCSS--------------SSEEEEECCCTTCCSCEEEEEEET
T ss_pred cEEecCCCeEEEEEEEEEcCCCeEEEEECCEECCCccccccC--------------CcEEEEEecccccCEEEEEEEEcC
Confidence 456778999999999999999999999999887543311000 001222445568999999999999
Q ss_pred CCCcccceEEEEEeec
Q psy12044 343 AGSTSSNYTIRIVLKE 358 (767)
Q Consensus 343 ~G~s~~s~sL~V~~~~ 358 (767)
.|.....+.|.|..++
T Consensus 401 ~G~~~~s~~L~v~~~p 416 (423)
T 3qs7_E 401 DAQFTKMFTLNIRSGT 416 (423)
T ss_dssp TEEEEEEEEEC-----
T ss_pred CceEEEEEEEEEecCC
Confidence 9998888777766543
No 335
>3rbs_A Myomesin-1; immunoglobulin C-SET domain, contractIle protein; 1.85A {Homo sapiens}
Probab=96.83 E-value=0.0014 Score=65.07 Aligned_cols=72 Identities=17% Similarity=0.243 Sum_probs=54.1
Q ss_pred cceeecccccccccccccc-cCCCcEEEeecCeeccCCCcccccccceeecccCcceeeeEEEEeeeccCCCCceeEeec
Q psy12044 262 FYLEIQEGKNVSLLCKVSA-IPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCVAE 340 (767)
Q Consensus 262 ~~~~v~~G~~vsL~C~a~g-~P~p~itW~~~g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~GtY~CvA~ 340 (767)
...++.+|..+.|.|.+.. .|.|.+.|++++..+...... .+.+. .......|.|.++..+|.|.|+|.+.
T Consensus 10 ~~~~v~eg~~v~l~c~~~~~~P~p~i~W~kng~~l~~~~~~-----~~~~~---~~~g~~~L~I~~v~~~D~G~Y~C~a~ 81 (207)
T 3rbs_A 10 LAVEILEKGQVRFWMQAEKLSGNAKVNYIFNEKEIFEGPKY-----KMHID---RNTGIIEMFMEKLQDEDEGTYTFQLQ 81 (207)
T ss_dssp EEEEECGGGCEEEEEECSCCCSCCEEEEEETTEEECSSSSC-----EEEEC---TTTCEEEEEESCCCGGGCEEEEEEEE
T ss_pred CceEEEeCCeEEEEEEEecCCCCCEEEEEECCEECccCCCE-----EEEEe---CCCCEEEEEECCCChhhCEEEEEEEE
Confidence 3567889999999999864 799999999999887543211 11111 11133579999999999999999999
Q ss_pred c
Q psy12044 341 N 341 (767)
Q Consensus 341 N 341 (767)
|
T Consensus 82 N 82 (207)
T 3rbs_A 82 D 82 (207)
T ss_dssp E
T ss_pred C
Confidence 8
No 336
>3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo sapiens} PDB: 3p40_A*
Probab=96.83 E-value=0.0011 Score=71.69 Aligned_cols=81 Identities=25% Similarity=0.457 Sum_probs=63.6
Q ss_pred ceeecccccccccccccccCCCcEEEeecCeeccCCCcccccccceeecccCcceeeeEEEEeeeccCCCCceeEeeccC
Q psy12044 263 YLEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCVAENQ 342 (767)
Q Consensus 263 ~~~v~~G~~vsL~C~a~g~P~p~itW~~~g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~GtY~CvA~N~ 342 (767)
...+..|..+.|.|.+.+.|.+.+.|.+++..+...... . ....+.|.|.++...|.|.|.|.+.|.
T Consensus 231 ~~~~~~G~~v~l~C~~~g~p~~~v~W~~~~~~~~~~~~~--------~-----~~~~~~L~i~~~~~~d~G~Y~C~a~n~ 297 (404)
T 3p3y_A 231 SQMVLRGMDLLLECIASGVPTPDIAWYKKGGDLPSDKAK--------F-----ENFNKALRITNVSEEDSGEYFCLASNK 297 (404)
T ss_dssp EEEEETTSCEEEECCBCCSSCCEEEEEETTBCCCTTTEE--------E-----EGGGTEEEESSCCGGGCEEEEEEEECS
T ss_pred CceEecCCCEEEEEEECCCCCCcEEEEECCEECCCCccc--------c-----cccCceEEEccCCHhHCEEEEEEEEeC
Confidence 355778999999999999999999999988766432211 0 112357999999999999999999999
Q ss_pred CCCcccceEEEEEe
Q psy12044 343 AGSTSSNYTIRIVL 356 (767)
Q Consensus 343 ~G~s~~s~sL~V~~ 356 (767)
.|.....+.+.|..
T Consensus 298 ~g~~~~~~~l~V~~ 311 (404)
T 3p3y_A 298 MGSIRHTISVRVKA 311 (404)
T ss_dssp SCEEEEEEEEEEEE
T ss_pred CCcEEEEEEEEEeC
Confidence 99877777666654
No 337
>2gi7_A GPVI protein; IG-like domains, blood clotting, cell adhesion; 2.40A {Homo sapiens}
Probab=96.82 E-value=0.00062 Score=65.78 Aligned_cols=69 Identities=13% Similarity=0.042 Sum_probs=53.1
Q ss_pred eecccccccccccccccCCCcEEEeecCeeccCCCcccccccceeecccCcceeeeEEEEeeeccCCCCceeEeeccCCC
Q psy12044 265 EIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCVAENQAG 344 (767)
Q Consensus 265 ~v~~G~~vsL~C~a~g~P~p~itW~~~g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~GtY~CvA~N~~G 344 (767)
.+.+|+.++|.|.+.+ +.+.+.|++++... ......|.|.++...|.|.|.|.+.|..|
T Consensus 18 ~v~~G~~v~L~C~~~~-~~~~~~W~k~g~~~--------------------~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g 76 (184)
T 2gi7_A 18 LVPLEKPVTLRCQGPP-GVDLYRLEKLSSSR--------------------YQDQAVLFIPAMKRSLAGRYRCSYQNGSL 76 (184)
T ss_dssp EEETTCCEEEEEECST-TCSEEEEEETTTCC--------------------EESSSEEEESSCCGGGCEEEEEEEEETTE
T ss_pred cccCCCcEEEEEeCCC-CCCEEEEEECCccc--------------------cCcccEEEECcCChhhCceEEEEEEcCCC
Confidence 6789999999999988 78899999976540 11235799999999999999999999876
Q ss_pred Ccc--cceEEEE
Q psy12044 345 STS--SNYTIRI 354 (767)
Q Consensus 345 ~s~--~s~sL~V 354 (767)
... ..+.+.|
T Consensus 77 ~~~~s~~~~l~V 88 (184)
T 2gi7_A 77 WSLPSDQLELVA 88 (184)
T ss_dssp EBCCCCCEEEEE
T ss_pred ccCCCCCEEEEe
Confidence 433 3344444
No 338
>1epf_A NCAM, protein (neural cell adhesion molecule); immunoglobulin fold, glycoprotein; 1.85A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 PDB: 2ncm_A 3ncm_A
Probab=96.82 E-value=0.00086 Score=64.38 Aligned_cols=76 Identities=29% Similarity=0.517 Sum_probs=55.5
Q ss_pred ccceeecccccccccccccccC-CCcEEEee-cCeeccCCCcccccccceeecccCcceeeeEEEEeeeccCCCCceeEe
Q psy12044 261 TFYLEIQEGKNVSLLCKVSAIP-EAKITWLF-DGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCV 338 (767)
Q Consensus 261 ~~~~~v~~G~~vsL~C~a~g~P-~p~itW~~-~g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~GtY~Cv 338 (767)
+....+.+|+.+.|.|.+.+.+ .+.+.|.+ ++..+..... .+.... .......|.|.++...|.|.|.|.
T Consensus 9 p~~~~v~~G~~v~l~C~~~~~~~~~~v~W~~~~g~~~~~~~~------~~~~~~--~~~~~~~L~i~~~~~~d~G~Y~C~ 80 (191)
T 1epf_A 9 PSQGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQ------RISVVW--NDDDSSTLTIYNANIDDAGIYKCV 80 (191)
T ss_dssp SSSEEEETTCCEEEEEEECCCSCCCEEEEECTTSCEECCBSS------SEEEEE--EETTEEEEEECSCCGGGCEEEEEE
T ss_pred CCCcEEcCCCCEEEEEECCCCCCCceEEEEeCCCccccCCCC------eEEEEE--CCCCceEEEEccCCcccCEEEEEE
Confidence 3456778999999999999987 88999999 7665542111 011111 012346899999999999999999
Q ss_pred eccCCC
Q psy12044 339 AENQAG 344 (767)
Q Consensus 339 A~N~~G 344 (767)
+.+..|
T Consensus 81 ~~~~~~ 86 (191)
T 1epf_A 81 VTAEDG 86 (191)
T ss_dssp EEETTT
T ss_pred EEcCCC
Confidence 999874
No 339
>3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33; 2.40A {Caenorhabditis elegans} PDB: 1koa_A
Probab=96.81 E-value=0.00063 Score=78.67 Aligned_cols=84 Identities=20% Similarity=0.322 Sum_probs=66.3
Q ss_pred ccceeecccccccccccccccCCCcEEEeecCeeccCCCcccccccceeecccCcceeeeEEEEeeeccCCCCceeEeec
Q psy12044 261 TFYLEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCVAE 340 (767)
Q Consensus 261 ~~~~~v~~G~~vsL~C~a~g~P~p~itW~~~g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~GtY~CvA~ 340 (767)
.....+..|+.+.+.|.+.+.|.|.++|.++++.+...... .... ......|.|.++...|.|.|+|.|.
T Consensus 489 ~~~~~v~~G~~~~~~~~v~g~P~P~v~W~k~~~el~~s~~~-------~i~~---~~~~~~L~I~~~~~~D~G~Yt~~A~ 558 (573)
T 3uto_A 489 PYGTEVGEGQSANFYCRVIASSPPVVTWHKDDRELKQSVKY-------MKRY---NGNDYGLTINRVKGDDKGEYTVRAK 558 (573)
T ss_dssp CCCEEECTTSCEEEEEEEECSSCCEEEEEETTEECCSSSSE-------EEEE---ETTEEEEEECSCCGGGCEEEEEEEE
T ss_pred CCCcEEeCCCcEEEEEEEEccCCCeEEEEECCEEcccCCcE-------EEEE---cCCEEEEEEcCCCcccCcEEEEEEE
Confidence 34567889999999999999999999999998877543221 1111 1234579999999999999999999
Q ss_pred cCCCCcccceEEEE
Q psy12044 341 NQAGSTSSNYTIRI 354 (767)
Q Consensus 341 N~~G~s~~s~sL~V 354 (767)
|..|...+.+.+.|
T Consensus 559 N~~G~~~~~v~l~V 572 (573)
T 3uto_A 559 NSYGTKEEIVFLNV 572 (573)
T ss_dssp ETTEEEEEEEEEEE
T ss_pred eCCCcEEEEEEEEE
Confidence 99999888777765
No 340
>1f2q_A High affinity immunoglobulin epsilon receptor ALP subunit; immunoglobulin fold, glycoprotein, IGE-binding Pro immune system; HET: NAG MAN; 2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1j86_A* 1rpq_A* 2y7q_A* 1f6a_A* 1j88_A* 1j89_A* 1j87_A*
Probab=96.80 E-value=0.0011 Score=63.25 Aligned_cols=73 Identities=23% Similarity=0.448 Sum_probs=54.3
Q ss_pred ccceeecccccccccccccccCCC-cEEEeecCeeccCCCcccccccceeecccCcceeeeEEEEeeeccCCCCceeEee
Q psy12044 261 TFYLEIQEGKNVSLLCKVSAIPEA-KITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCVA 339 (767)
Q Consensus 261 ~~~~~v~~G~~vsL~C~a~g~P~p-~itW~~~g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~GtY~CvA 339 (767)
+....+.+|+.+.|.|.+.+.+.+ .+.|.+++..+.. ....|.|.++...|.|.|.|.+
T Consensus 11 p~~~~v~~G~~v~L~C~~~~~~~~~~i~W~~~~~~~~~--------------------~~~~L~i~~v~~~d~G~Y~C~~ 70 (176)
T 1f2q_A 11 PPWNRIFKGENVTLTCNGNNFFEVSSTKWFHNGSLSEE--------------------TNSSLNIVNAKFEDSGEYKCQH 70 (176)
T ss_dssp SSCSEEETTCCEEEECCTTCC----CCEEEETTEECSC--------------------CSSEEEECSCCGGGCEEEEEEC
T ss_pred CCCcceecCCcEEEEEeCCCCCCcceEEEEECCeECCC--------------------CceEEEEeccceecCEEEEEEc
Confidence 334578899999999999998885 6999998866532 1357999999999999999999
Q ss_pred ccCCCCcccceEEEEE
Q psy12044 340 ENQAGSTSSNYTIRIV 355 (767)
Q Consensus 340 ~N~~G~s~~s~sL~V~ 355 (767)
.|..+.. .+.+.|.
T Consensus 71 ~~~~~s~--~~~l~V~ 84 (176)
T 1f2q_A 71 QQVNESE--PVYLEVF 84 (176)
T ss_dssp TTSSCCC--CEEEEEE
T ss_pred CCccccc--cEEEEEe
Confidence 9866543 4444444
No 341
>2d3v_A Leukocyte immunoglobulin-like receptor subfamily A member 5 isoform 1; immunoglobulin-like fold, immune system; 1.85A {Homo sapiens}
Probab=96.80 E-value=0.00082 Score=65.45 Aligned_cols=79 Identities=15% Similarity=0.257 Sum_probs=56.3
Q ss_pred eecccccccccccccccCCCcEEEeecCeeccCCCcccccccceeecccCcceeeeEEEEeeeccCCCCceeEeeccCCC
Q psy12044 265 EIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCVAENQAG 344 (767)
Q Consensus 265 ~v~~G~~vsL~C~a~g~P~p~itW~~~g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~GtY~CvA~N~~G 344 (767)
.+.+|+.++|.|.+.+.+. .+.|++++..+...... .........|.|.++...|.|.|.|.+.|..|
T Consensus 15 ~v~~G~~v~L~C~~~~~~~-~~~W~k~g~~~~~~~~~-----------~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g 82 (196)
T 2d3v_A 15 VISRGNSVTIRCQGTLEAQ-EYRLVKEGSPEPWDTQN-----------PLEPKNKARFSIPSMTEHHAGRYRCYYYSPAG 82 (196)
T ss_dssp EEETTCCEEEEEECCTTCC-EEEEEETTCSSCSEEEC-----------CCSSTTEEEEEESSCCGGGCEEEEEEEEETTE
T ss_pred cccCCCeEEEEEeCCCCCc-EEEEEECCCCCCccccc-----------ccCCccccEEEeccCChhHCeEEEEEEeCCCC
Confidence 6778999999999988776 99999987655321100 00112346799999999999999999998876
Q ss_pred Ccc--cceEEEEE
Q psy12044 345 STS--SNYTIRIV 355 (767)
Q Consensus 345 ~s~--~s~sL~V~ 355 (767)
... ..+.+.|.
T Consensus 83 ~~~~s~~~~l~V~ 95 (196)
T 2d3v_A 83 WSEPSDPLELVVT 95 (196)
T ss_dssp ECBCCCCEEEEEE
T ss_pred cCCcCccEEEEec
Confidence 443 33444444
No 342
>1sy6_A T-cell surface glycoprotein CD3 gamma/epsilon chain; CD3 epsilon, OKT3 FAB, signaling protein/antibiotic complex; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 2atp_E*
Probab=96.79 E-value=0.00077 Score=66.65 Aligned_cols=65 Identities=18% Similarity=0.436 Sum_probs=50.5
Q ss_pred ccccccccccccccCCCcEEEeecCeeccCCCcccccccceeecccCcceeeeEEEEeee-ccCCCCceeEeeccCCCC
Q psy12044 268 EGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNS-NIDDNGTFVCVAENQAGS 345 (767)
Q Consensus 268 ~G~~vsL~C~a~g~P~p~itW~~~g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nv-s~sD~GtY~CvA~N~~G~ 345 (767)
+|..++|.|. +.|.+.+.|.+++..+...... ... ....+.|.|.++ ...|.|.|+|.|.|..|.
T Consensus 127 ~G~~v~L~C~--g~p~p~i~W~k~~~~l~~~~~~----~~~-------~~~~~~L~I~~v~~~~D~G~Y~C~A~N~~g~ 192 (204)
T 1sy6_A 127 SGTTVILTCP--QYPGSEILWQHNDKNIGGDEDD----KNI-------GSDEDHLSLKEFSELEQSGYYVCYPRGSKPE 192 (204)
T ss_dssp ETTEEEEECS--CCCSSCEEEEETTEEESCCTTC----TTE-------EEETTEEEETTCCHHHHCEEEEEEETTSCGG
T ss_pred cCCcEEEEcC--CCCCCceEEEECCEECCCccCC----ceE-------ecCCCEEEEeeCCccccCEEEEEEeccCCCC
Confidence 8999999999 7888999999998776432110 000 112467999999 999999999999999985
No 343
>1jbj_A CD3 epsilon and gamma ectodomain fragment complex; beta-sheet, C2-SET immunoglobulin superfamily, H-bonded G strand PAIR, single-chain; NMR {Mus musculus} SCOP: b.1.1.4 b.1.1.4 PDB: 1xmw_A
Probab=96.78 E-value=0.00098 Score=64.68 Aligned_cols=66 Identities=20% Similarity=0.465 Sum_probs=51.7
Q ss_pred ecccccccccccccccCCCcEEEeecCeeccCCCcccccccceeecccCcceeeeEEEEee-eccCCCCceeEeeccCCC
Q psy12044 266 IQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYN-SNIDDNGTFVCVAENQAG 344 (767)
Q Consensus 266 v~~G~~vsL~C~a~g~P~p~itW~~~g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~n-vs~sD~GtY~CvA~N~~G 344 (767)
...|+.+.|.|.+.+ + +.+.|.+++..+... ....|.|.+ +..+|.|.|.|.|.|..|
T Consensus 11 ~~~G~~v~L~C~~~~-~-~~i~W~k~g~~l~~~-------------------~~~~L~I~~~~~~~D~G~Y~C~a~n~~g 69 (186)
T 1jbj_A 11 SISGTSVELTCPLDS-D-ENLKWEKNGQELPQK-------------------HDKHLVLQDFSEVEDSGYYVCYTPASNK 69 (186)
T ss_dssp EEETTEEEEECSSCC-C-TTCEEEETTEEECSC-------------------CCSEEEEESCCTTTSCEEEEEECSSCCC
T ss_pred EeCCcEEEEEEeCCC-C-CceEEEECCEECCCC-------------------CCCEEEECCCCccccCEEEEEEEEeCCC
Confidence 467999999999988 4 359999998776432 123699999 999999999999999988
Q ss_pred CcccceEE
Q psy12044 345 STSSNYTI 352 (767)
Q Consensus 345 ~s~~s~sL 352 (767)
.....+.+
T Consensus 70 ~~~~~~~~ 77 (186)
T 1jbj_A 70 NTYLYLKA 77 (186)
T ss_dssp CCCEEECC
T ss_pred cEEEEEEE
Confidence 74443333
No 344
>1hng_A CD2; T lymphocyte adhesion glycoprotein; 2.80A {Rattus rattus} SCOP: b.1.1.1 b.1.1.3
Probab=96.78 E-value=0.00059 Score=65.73 Aligned_cols=61 Identities=15% Similarity=0.162 Sum_probs=47.6
Q ss_pred cccccccccccccCCCcEEEeecCeeccCCCcccccccceeecccCcceeeeEEEEeeeccCCCCceeEeeccCCCCccc
Q psy12044 269 GKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCVAENQAGSTSS 348 (767)
Q Consensus 269 G~~vsL~C~a~g~P~p~itW~~~g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~GtY~CvA~N~~G~s~~ 348 (767)
+..+.|.|.+.+.|.|.+.|.+++..+.... .+.+.++...|.|.|.|.|.|..|...+
T Consensus 110 ~~~v~L~C~~~g~p~p~i~W~~~g~~l~~~~---------------------~~~i~~~~~~d~G~Y~C~a~N~~g~~~~ 168 (176)
T 1hng_A 110 CSNATLTCEVLEGTDVELKLYQGKEHLRSLR---------------------QKTMSYQWTNLRAPFKCKAVNRVSQESE 168 (176)
T ss_dssp TTTTEEEEECSSCSSCEEEEEETTEEEEEES---------------------SSEEEEECSCCSSCEEEEEEETTEEEEE
T ss_pred CCcEEEEEEecCCCCcEEEEEECCEECCCCC---------------------cEEEEEEEccCCeEEEEEEEecCCCcee
Confidence 3458999999999999999999887664221 1344577899999999999999987655
Q ss_pred ce
Q psy12044 349 NY 350 (767)
Q Consensus 349 s~ 350 (767)
..
T Consensus 169 ~~ 170 (176)
T 1hng_A 169 ME 170 (176)
T ss_dssp EE
T ss_pred cc
Confidence 43
No 345
>1fnl_A Low affinity immunoglobulin gamma FC region receptor III-B; beta sandwich, immunoglobulin-like, immune system receptor; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1e4j_A 1e4k_C* 1t83_C* 1t89_C* 3ay4_C*
Probab=96.78 E-value=0.00098 Score=63.62 Aligned_cols=72 Identities=19% Similarity=0.415 Sum_probs=55.7
Q ss_pred cceeecccccccccccccccCCCc-EEEeecCeeccCCCcccccccceeecccCcceeeeEEEEeeeccCCCCceeEeec
Q psy12044 262 FYLEIQEGKNVSLLCKVSAIPEAK-ITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCVAE 340 (767)
Q Consensus 262 ~~~~v~~G~~vsL~C~a~g~P~p~-itW~~~g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~GtY~CvA~ 340 (767)
....+.+|+.+.|.|.+.+.+.+. +.|.+++..+.. ..+.|.|.++..+|.|.|.|.+.
T Consensus 15 ~~~~v~~G~~v~L~C~~~~~p~~~~~~W~~~~~~~~~--------------------~~~~L~i~~~~~~d~G~Y~C~~~ 74 (175)
T 1fnl_A 15 QWYSVLEKDSVTLKCQGAYSPEDNSTQWFHNESLISS--------------------QASSYFIDAATVNDSGEYRCQTN 74 (175)
T ss_dssp CCSEEETTCCEEEEEECCCBTTBCCCEEEETTEEEES--------------------SCSEEEESSCCGGGCEEEEEECS
T ss_pred CceeeeCCCcEEEEeeCCCCCCCcceEEEECCEEccC--------------------CceEEEEeCCCcccCEEEEEEee
Confidence 345678999999999999988776 789998866542 13479999999999999999999
Q ss_pred cCCCCcccceEEEEE
Q psy12044 341 NQAGSTSSNYTIRIV 355 (767)
Q Consensus 341 N~~G~s~~s~sL~V~ 355 (767)
|..+ ...+.+.|.
T Consensus 75 n~~~--s~~~~l~V~ 87 (175)
T 1fnl_A 75 LSTL--SDPVQLEVH 87 (175)
T ss_dssp SSCC--CCCEEEEEE
T ss_pred CCcc--cccEEEEEe
Confidence 8554 334455544
No 346
>3mj8_L Stimulatory hamster antibody HL4E10 FAB light CHA; hamster IGG, immune system; 2.94A {Cricetulus migratorius} PDB: 3mj9_L*
Probab=96.77 E-value=0.0024 Score=62.56 Aligned_cols=90 Identities=11% Similarity=0.276 Sum_probs=58.9
Q ss_pred ceeecccccccccccccccCCCcEEEeec--Ceecc----CCCcccc-cccceeecccCcceeeeEEEEeeeccCCCCce
Q psy12044 263 YLEIQEGKNVSLLCKVSAIPEAKITWLFD--GVPIQ----NESMSAS-ESHAVYSTEEGTEIKKSELLIYNSNIDDNGTF 335 (767)
Q Consensus 263 ~~~v~~G~~vsL~C~a~g~P~p~itW~~~--g~~l~----~~s~~~~-~~~~~~~~~~g~~~~~s~L~I~nvs~sD~GtY 335 (767)
...+.+|+.+.|.|.+.+.+.+.+.|++. +.... ....... ....+.... ......|.|.++..+|.|.|
T Consensus 9 ~~~v~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~---~~~~~~L~I~~v~~~D~G~Y 85 (213)
T 3mj8_L 9 LVSVALGQKATITCSGDKLSDVYVHWYQQKAGQAPVLVIYEDNRRPSGIPDHFSGSN---SGNMATLTISKAQAGDEADY 85 (213)
T ss_dssp EEEEETTSCEEEEEECSSTTTSCEEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEE---ETTEEEEEESSCCGGGCEEE
T ss_pred cEEEeCCCCEEEEEEcCCCCCceEEEEEECCCCCcEEEEEECCccCCCccCcEEEEe---cCCEEEEEECCCChhhCEEE
Confidence 67788999999999999999999999882 21110 0000000 001111111 22346799999999999999
Q ss_pred eEeeccCCC---CcccceEEEEE
Q psy12044 336 VCVAENQAG---STSSNYTIRIV 355 (767)
Q Consensus 336 ~CvA~N~~G---~s~~s~sL~V~ 355 (767)
.|.+.+..| .......+.|.
T Consensus 86 ~C~~~~~~~~~~~~~~~~~l~V~ 108 (213)
T 3mj8_L 86 YCQSWDGTNSAWVFGSGTKVTVL 108 (213)
T ss_dssp EEEEEETTTTEEEEBCCEEEEEE
T ss_pred EEEeccCCcceeEEcCceEEEEe
Confidence 999999887 33444555554
No 347
>1fnl_A Low affinity immunoglobulin gamma FC region receptor III-B; beta sandwich, immunoglobulin-like, immune system receptor; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1e4j_A 1e4k_C* 1t83_C* 1t89_C* 3ay4_C*
Probab=96.75 E-value=0.00076 Score=64.39 Aligned_cols=64 Identities=19% Similarity=0.312 Sum_probs=50.7
Q ss_pred eeecccccccccccccccCCC-cEEEeecCeeccCCCcccccccceeecccCcceeeeEEEEeeeccCCCCceeEeeccC
Q psy12044 264 LEIQEGKNVSLLCKVSAIPEA-KITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCVAENQ 342 (767)
Q Consensus 264 ~~v~~G~~vsL~C~a~g~P~p-~itW~~~g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~GtY~CvA~N~ 342 (767)
..+.+|..+.|.|.+.+.+.+ .+.|.+++..+.. ......|.|.++..+|.|.|.|.|.|.
T Consensus 98 ~~~~~g~~~~l~C~~~~~~~~~~~~W~k~g~~~~~------------------~~~~~~L~i~~v~~~d~G~Y~C~a~n~ 159 (175)
T 1fnl_A 98 WVFKEEDPIHLRCHSWKNTALHKVTYLQNGKDRKY------------------FHHNSDFHIPKATLKDSGSYFCRGLVG 159 (175)
T ss_dssp SEEETTCCEEEEEEECTTCCCEEEEEEETTEEEEE------------------EEECCCEEESSCCGGGCEEEEEEEEET
T ss_pred ceecCCCCEEEEEEcCCCCCceEEEEEECCeEccC------------------CCCCCEEEEcccChhhCeEEEEEEEcC
Confidence 456789999999999887654 9999998876521 112357999999999999999999997
Q ss_pred CCC
Q psy12044 343 AGS 345 (767)
Q Consensus 343 ~G~ 345 (767)
.|.
T Consensus 160 ~~~ 162 (175)
T 1fnl_A 160 SKN 162 (175)
T ss_dssp TEE
T ss_pred CCC
Confidence 553
No 348
>2oz4_A Intercellular adhesion molecule 1; IGSF domain, structural plasticity, cell-surface dimerizatio adhesion; HET: NAG FUC; 2.70A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 b.1.1.4 PDB: 1p53_A*
Probab=96.74 E-value=0.00091 Score=68.34 Aligned_cols=70 Identities=20% Similarity=0.311 Sum_probs=54.4
Q ss_pred ceeecccccccccccccccCCCcEEEeecCeeccCCCcccccccceeecccCcceeeeEEEEeeeccCCCCceeEeeccC
Q psy12044 263 YLEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCVAENQ 342 (767)
Q Consensus 263 ~~~v~~G~~vsL~C~a~g~P~p~itW~~~g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~GtY~CvA~N~ 342 (767)
...+.+|+.+.|.|.+.+.|.|.+.|.+++..+.. .+ .+..+..+|.|.|.|.|.|.
T Consensus 194 ~~~v~~g~~~~l~C~~~g~P~p~i~W~~~~~~~~~---------------~g--------~~~~v~~~d~G~Y~C~a~N~ 250 (265)
T 2oz4_A 194 NWTWPENSQQTPMCQAWGNPLPELKCLKDGTFPLP---------------IG--------ESVTVTRDLEGTYLCRARST 250 (265)
T ss_dssp EEEEETTCEECCCCCCEEESCCEEEEEETTTEECC---------------TT--------SCEECCGGGCEEEEEEEEET
T ss_pred ccEEcCCCeEEEEeECccCCCCeEEEEECCcccCC---------------CC--------cEEEeehhhCeEEEEEEECC
Confidence 45678899999999999999999999998762111 01 11247789999999999999
Q ss_pred CCCcccceEEEEE
Q psy12044 343 AGSTSSNYTIRIV 355 (767)
Q Consensus 343 ~G~s~~s~sL~V~ 355 (767)
.|.....+.+.|.
T Consensus 251 ~G~~~~~~~l~V~ 263 (265)
T 2oz4_A 251 QGEVTREVTVNVL 263 (265)
T ss_dssp TEEEEEEEEEEEE
T ss_pred CCcEEEEEEEEEe
Confidence 9988777766654
No 349
>4i0k_A CD276 antigen; immunoglobulin domain, glycoprotein, immunity, adaptive IMMU structural genomics, protein structure initiative; HET: NAG BMA MAN; 2.97A {Mus musculus}
Probab=96.73 E-value=0.0015 Score=64.33 Aligned_cols=84 Identities=19% Similarity=0.366 Sum_probs=56.4
Q ss_pred eecccccccccccc-cccCCCcEEEee-cCeeccCCCcccccccceeecccCcceeeeEEEEeeeccCCCCceeEeeccC
Q psy12044 265 EIQEGKNVSLLCKV-SAIPEAKITWLF-DGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCVAENQ 342 (767)
Q Consensus 265 ~v~~G~~vsL~C~a-~g~P~p~itW~~-~g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~GtY~CvA~N~ 342 (767)
.+..|..+.|.|.+ .+.|.+.+.|.. ++..+..... ..... ........|.+.++..+|.|.|+|.+.|.
T Consensus 121 ~v~~G~~~~l~C~~~~g~P~~~v~W~~~~~~~~~~~~~-------~~~~~-~~~~~~~~l~i~~v~~~d~G~Y~C~a~n~ 192 (222)
T 4i0k_A 121 DLRPGNMVTITCSSYQGYPEAEVFWKDGQGVPLTGNVT-------TSQMA-NERGLFDVHSVLRVVLGANGTYSCLVRNP 192 (222)
T ss_dssp ---CCSEEEEEEEEEEEBSCCEEEEECTTSCBCCSEEE-------EEEEE-CTTSCEEEEEEEEEECCTTCEEEEEEEET
T ss_pred eecCCceEEEEEecccccCCCeEEEEcCCCccCCCCcc-------eeEEc-CCCCeEEEEEEEEEEeCCCCEEEEEEECC
Confidence 45679999999999 888999999988 3433321110 00000 01111235788999999999999999999
Q ss_pred CCCcccceEEEEEe
Q psy12044 343 AGSTSSNYTIRIVL 356 (767)
Q Consensus 343 ~G~s~~s~sL~V~~ 356 (767)
.|.....+.+.|..
T Consensus 193 ~g~~~~~~~l~V~~ 206 (222)
T 4i0k_A 193 VLQQDAHGSVTITG 206 (222)
T ss_dssp TTTEEEEEEEECCC
T ss_pred CCCCceEEEEEEeC
Confidence 99887777666554
No 350
>3oq3_B IFN-alpha/beta binding protein C12R; mousepox virus, moscow strain, cytokine decoy RE virus/viral protein, type-1 interferon, soluble A/B-IFNR; HET: EPE; 2.10A {Ectromelia virus}
Probab=96.70 E-value=0.002 Score=68.21 Aligned_cols=88 Identities=17% Similarity=0.219 Sum_probs=62.6
Q ss_pred cceeecccccccccccccccC---CC-cEEEeecCeeccCCCcccccccceeecccCcceeeeEEEEeeeccCCCC-cee
Q psy12044 262 FYLEIQEGKNVSLLCKVSAIP---EA-KITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNG-TFV 336 (767)
Q Consensus 262 ~~~~v~~G~~vsL~C~a~g~P---~p-~itW~~~g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~G-tY~ 336 (767)
....+..|+.+.|.|.+.+.| .+ .+.|.+++..+...... .. ......+. ...+.|.|.++..+|.| .|+
T Consensus 236 ~~~~v~~G~~~~l~C~~~g~p~~~~~i~v~W~~~g~~i~~~~~~---~~-~~~~~~~~-~~~~~L~I~~v~~~D~G~~Y~ 310 (329)
T 3oq3_B 236 PKINVTIGEPANITCTAVSTSLLVDDVLIDWENPSGWIIGLDFG---VY-SILTSSGG-ITEATLYFENVTEEYIGNTYT 310 (329)
T ss_dssp SEEEECTTSCEEEEEEEEETTCCTTCCEEEEECTTSCBCCBCSS---EE-EEEEEETT-EEEEEEEESSCCGGGTTCEEE
T ss_pred CeeEEecCCCEEEEEEEEECCCCCCCcEEEEEECCeeeeccCCc---ee-eeecccCc-eeEeEEEEEeccHHHCCCcEE
Confidence 346778999999999999998 77 88999988764221110 00 00001111 35678999999999999 999
Q ss_pred EeeccCCCCcccceEEEE
Q psy12044 337 CVAENQAGSTSSNYTIRI 354 (767)
Q Consensus 337 CvA~N~~G~s~~s~sL~V 354 (767)
|.|.|..|.....+.+.|
T Consensus 311 C~a~N~~G~~~~~~~l~v 328 (329)
T 3oq3_B 311 CRGHNYYFDKTLTTTVVL 328 (329)
T ss_dssp EEEECSSCEEEEEEEEEE
T ss_pred EEEEecCCceEEEEEEEe
Confidence 999999998776665543
No 351
>1nfd_E H57 FAB; complex (immunoreceptor-immunoglobulin), complex (immunorece immunoglobulin) complex; HET: NAG NDG; 2.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2
Probab=96.69 E-value=0.00084 Score=65.93 Aligned_cols=79 Identities=15% Similarity=0.311 Sum_probs=55.9
Q ss_pred eccccccccccccccc-CC-CcEEEeecCeeccCCCcccccccceeecccCcceeeeEEEEeeeccCCCCceeEeeccCC
Q psy12044 266 IQEGKNVSLLCKVSAI-PE-AKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCVAENQA 343 (767)
Q Consensus 266 v~~G~~vsL~C~a~g~-P~-p~itW~~~g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~GtY~CvA~N~~ 343 (767)
+..|..+.|.|.+.+. |. +.+.|.+++..+....... .......+ ....+.|.|.++..+|.|.|+|.|.|..
T Consensus 125 ~~~g~~v~L~C~~~g~~p~~~~v~W~k~g~~~~~~~~~~----~~~~~~~~-~~~~s~L~i~~~~~~d~G~Y~C~a~n~~ 199 (212)
T 1nfd_E 125 ELRTNKATLVCLVNDFYPGSATVTWKANGATINDGVKTT----KPSKQGQN-YMTSSYLSLTADQWKSHNRVSCQVTHEG 199 (212)
T ss_dssp HHHTTEECCCEEEEEEBSSCCEEEEEETTEEECSSCBCC----CCBCSSSC-EEEEEBCCEEHHHHHTCSCEEEEEECTT
T ss_pred hccCCceEEEEEEEeeECCccEEEEEECCeEcCCCeecC----CceecCCC-ceEEEEEEEchhhcCCCCeEEEEEEeCC
Confidence 4568899999999987 44 7999999988775432110 00111122 3345679999999999999999999988
Q ss_pred CCcccc
Q psy12044 344 GSTSSN 349 (767)
Q Consensus 344 G~s~~s 349 (767)
+.....
T Consensus 200 ~~~~~~ 205 (212)
T 1nfd_E 200 ETVEKS 205 (212)
T ss_dssp TTCCCC
T ss_pred ceEEEE
Confidence 765443
No 352
>2nzi_A Titin; IG-domain, FNIII-domain, transferase; 2.90A {Homo sapiens}
Probab=96.68 E-value=0.0014 Score=68.01 Aligned_cols=85 Identities=21% Similarity=0.233 Sum_probs=64.4
Q ss_pred ceeecccccccccccccccCCCcEEEeecCeeccCCCcccccccceeecccCcceeeeEEEEee-eccCCCCceeEeecc
Q psy12044 263 YLEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYN-SNIDDNGTFVCVAEN 341 (767)
Q Consensus 263 ~~~v~~G~~vsL~C~a~g~P~p~itW~~~g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~n-vs~sD~GtY~CvA~N 341 (767)
...+..|..+.|.|.+.+.|.+.+.|.+++..+...... .... ......|.|.+ +...|.|.|.|.|.|
T Consensus 113 ~~~~~~g~~~~l~C~~~g~p~p~i~W~~~~~~~~~~~~~-------~~~~---~~~~~~l~i~~~~~~~d~G~Y~C~a~N 182 (305)
T 2nzi_A 113 AVHALRGEVVSIKIPFSGKPDPVITWQKGQDLIDNNGHY-------QVIV---TRSFTSLVFPNGVERKDAGFYVVCAKN 182 (305)
T ss_dssp CEEEETTCCEEEEEEEEEESCCEEEEEESSSBCCSSSSC-------EEEE---CSSEEEEEETTCCCSTTCEEEEEEEEE
T ss_pred cEEecCCCEEEEEEEECCCCCCEEEEEECCEECCCCCcE-------EEEE---cCCceEEEEecCCccCccEEEEEEEEe
Confidence 345678999999999999999999999987766432211 1110 11245788998 999999999999999
Q ss_pred CCCCcccceEEEEEee
Q psy12044 342 QAGSTSSNYTIRIVLK 357 (767)
Q Consensus 342 ~~G~s~~s~sL~V~~~ 357 (767)
..|.....+.+.+...
T Consensus 183 ~~G~~~~~~~l~v~~~ 198 (305)
T 2nzi_A 183 RFGIDQKTVELDVADV 198 (305)
T ss_dssp TTEEEEEEEEEEEEBC
T ss_pred CCCceeeEEEEEEecC
Confidence 9999887777776643
No 353
>2ocw_A Polymeric-immunoglobulin receptor; SC, secretory, antibody, immunity, immune system; NMR {Homo sapiens} PDB: 3chn_S 3cm9_S 3chn_J 3cm9_J
Probab=96.67 E-value=0.0023 Score=73.31 Aligned_cols=92 Identities=9% Similarity=0.058 Sum_probs=63.0
Q ss_pred cceeeccccccccccccc----ccCCCcEEEeecCeeccCCCcccccccceeecccCcceeeeEEEEeeeccCCCCceeE
Q psy12044 262 FYLEIQEGKNVSLLCKVS----AIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVC 337 (767)
Q Consensus 262 ~~~~v~~G~~vsL~C~a~----g~P~p~itW~~~g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~GtY~C 337 (767)
....+..|+.+.|.|.+. +.|.+.+.|.+++..+......... ..+.........+.|.|.++..+|.|.|+|
T Consensus 450 ~~~~v~~G~~v~L~C~~~~~~~~~p~~~v~W~k~g~~~~~~~~~~~~---~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C 526 (585)
T 2ocw_A 450 GNVTAVLGETLKVPCHFPCKFSSYEKYWCKWNNTGCQALPSQDEGPS---KAFVNCDENSRLVSLTLNLVTRADEGWYWC 526 (585)
T ss_pred CceeEecCCcEEEEEEecCCCCCCccEEEEEeecCceeeeccCCCCC---cceEEecCcccEEEEEECCCCcccCeEEEE
Confidence 445678899999999886 6788899999988765432211000 001111112234689999999999999999
Q ss_pred eeccCCCCcccc-eEEEEEe
Q psy12044 338 VAENQAGSTSSN-YTIRIVL 356 (767)
Q Consensus 338 vA~N~~G~s~~s-~sL~V~~ 356 (767)
.|.|..|..... +.|.|..
T Consensus 527 ~a~N~~G~~~~~~~~l~V~~ 546 (585)
T 2ocw_A 527 GVKQGHFYGETAAVYVAVEE 546 (585)
T ss_pred EeEeCCCccEEEEEEEEEEe
Confidence 999999876653 5555554
No 354
>1ugn_A LIR1, leukocyte immunoglobulin-like receptor 1; immunoglobulin-like folds, immune system; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 3d2u_D* 1g0x_A 1p7q_D 1ufu_A 1vdg_A 2gw5_A 2dyp_D 2otp_A 3q2c_A
Probab=96.66 E-value=0.0023 Score=62.21 Aligned_cols=73 Identities=12% Similarity=0.147 Sum_probs=49.1
Q ss_pred eeecccccccccccccccCCCcEEEeecCeeccCCCcccccccceeecccCcceeeeEEEEeeeccCCCCceeEeeccCC
Q psy12044 264 LEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCVAENQA 343 (767)
Q Consensus 264 ~~v~~G~~vsL~C~a~g~P~p~itW~~~g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~GtY~CvA~N~~ 343 (767)
..+.+|+.+.|.|.+.+. .+.+.|.+++..+...... ............|.|.++..+|.|.|.|.|.|..
T Consensus 110 ~~v~~G~~v~L~C~~~~~-~~~v~W~k~g~~~~~~~~~--------~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~ 180 (198)
T 1ugn_A 110 PVVNSGGNVTLQCDSQVA-FDGFILCKEGEDEHPQCLN--------SQPHARGSSRAIFSVGPVSPSRRWWYRCYAYDSN 180 (198)
T ss_dssp SEEETTCCEEEEEECSSC-CSEEEEEEC------CEEE--------C------CCEEEEEECCCCTTSCEEEEEEEECTT
T ss_pred cccCCCCcEEEEEecCCC-CcEEEEEECCCccCCcccc--------ccccCCCcceeEEEecccCcccCeEEEEEEEeCC
Confidence 457789999999999988 7899999988665321110 0000001124689999999999999999999986
Q ss_pred CC
Q psy12044 344 GS 345 (767)
Q Consensus 344 G~ 345 (767)
+.
T Consensus 181 ~~ 182 (198)
T 1ugn_A 181 SP 182 (198)
T ss_dssp ST
T ss_pred CC
Confidence 63
No 355
>4f80_A Butyrophilin subfamily 3 member A1; B7 superfamily, CD277, immune system; 1.94A {Homo sapiens} PDB: 4f9l_A* 4f9p_A 4f8t_A 4f8q_A
Probab=96.66 E-value=0.0016 Score=64.78 Aligned_cols=85 Identities=13% Similarity=0.148 Sum_probs=52.1
Q ss_pred ccceeecccccccccccccc-cCCCcEEEeecCe-eccCCCcccccccceeecccCcceeeeEEEEeeeccCCCCceeEe
Q psy12044 261 TFYLEIQEGKNVSLLCKVSA-IPEAKITWLFDGV-PIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCV 338 (767)
Q Consensus 261 ~~~~~v~~G~~vsL~C~a~g-~P~p~itW~~~g~-~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~GtY~Cv 338 (767)
.....+..|..+.+.|.+.+ .|.|.++|.+++. .+...... ......+.. ..+.+.++..+|.|.|+|.
T Consensus 125 ~~~~~~~~g~~v~l~c~~~g~~P~p~i~W~k~~~~~~~~~~~~------~~~~~~g~~---~v~s~l~v~~~d~G~YtC~ 195 (226)
T 4f80_A 125 HVDVKGYKDGGIHLECRSTGWYPQPQIQWSNNKGENIPTVEAP------VVADGVGLY---AVAASVIMRGSSGEGVSCT 195 (226)
T ss_dssp EEEEEEEETTEEEEEEEEEEEBSCCEEEEECTTSCBCCCEECC------CEECTTSCE---EEEEEEEECC----CEEEE
T ss_pred cceeeeccCCceeeEEEeccCCCCCEEEEEECCceEcCCCceE------EEECCCCcE---EEEEEEEechhcCcEEEEE
Confidence 33456778999999999988 5999999998543 33221110 111112211 1234456778899999999
Q ss_pred eccCCCCcccceEEEE
Q psy12044 339 AENQAGSTSSNYTIRI 354 (767)
Q Consensus 339 A~N~~G~s~~s~sL~V 354 (767)
|.|..|...+.+.+.|
T Consensus 196 a~N~~g~~~~~~~v~v 211 (226)
T 4f80_A 196 IRSSLLGLEKTASISI 211 (226)
T ss_dssp EEETTTTEEEEEEECC
T ss_pred EEeCCCCeEEEEEEEE
Confidence 9999998777665544
No 356
>2v44_A NCAM2, neural cell adhesion molecule 2; phosphorylation, immunoglobulin domain, IG, membrane, homphilic, glycoprotein, transmembrane; 1.77A {Homo sapiens} PDB: 2xy2_A* 2vaj_A
Probab=96.65 E-value=0.0014 Score=62.84 Aligned_cols=84 Identities=31% Similarity=0.538 Sum_probs=59.2
Q ss_pred ccceeecccccccccccccccCCCcEEEee-cCeeccCCCcccccccceeecccCcceeeeEEEEeeeccCCCCceeEee
Q psy12044 261 TFYLEIQEGKNVSLLCKVSAIPEAKITWLF-DGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCVA 339 (767)
Q Consensus 261 ~~~~~v~~G~~vsL~C~a~g~P~p~itW~~-~g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~GtY~CvA 339 (767)
+....+..|+.+.|.|.+.+.|. .+.|.+ ++..+..... +.....+ ....|.|.++...|.|.|.|.+
T Consensus 9 ~~~~~v~~G~~v~L~C~~~~~p~-~v~W~~~~~~~~~~~~~-------~~~~~~~---~~~~L~i~~~~~~d~G~Y~C~~ 77 (189)
T 2v44_A 9 LSKVELSVGESKFFTCTAIGEPE-SIDWYNPQGEKIISTQR-------VVVQKEG---VRSRLTIYNANIEDAGIYRCQA 77 (189)
T ss_dssp CSEEEEETTCCEEEEEEEEECCS-EEEEECTTSCBCCCCSS-------EEEEEET---TEEEEEECSCCGGGCEEEEEEE
T ss_pred CCceEEecCCcEEEEEEeecCCe-eEEEEeCCCCccCCCce-------EEEECCC---CeEEEEEccCCcccCeEEEEEE
Confidence 34567889999999999998887 899999 5655432211 1111111 2358999999999999999999
Q ss_pred ccCCCCc-ccceEEEEE
Q psy12044 340 ENQAGST-SSNYTIRIV 355 (767)
Q Consensus 340 ~N~~G~s-~~s~sL~V~ 355 (767)
.|..|.. ...+.+.+.
T Consensus 78 ~~~~g~~~~~~~~l~v~ 94 (189)
T 2v44_A 78 TDAKGQTQEATVVLEIY 94 (189)
T ss_dssp ECTTSCEEEEEEEEEEE
T ss_pred EeCCCCcEEEEEEEEEe
Confidence 9988765 334444443
No 357
>3nl4_L Antigen binding fragment, immunoglobulin IGG - LI; FAB, rabbit, conformation-specific, amyloid, immune system; 1.54A {Oryctolagus cuniculus} PDB: 4hbc_L
Probab=96.61 E-value=0.0029 Score=61.94 Aligned_cols=92 Identities=14% Similarity=0.159 Sum_probs=58.4
Q ss_pred ccceeecccccccccccccccCCCcEEEeecC--eec---cC-CCccccc-ccceeecccCcceeeeEEEEeeeccCCCC
Q psy12044 261 TFYLEIQEGKNVSLLCKVSAIPEAKITWLFDG--VPI---QN-ESMSASE-SHAVYSTEEGTEIKKSELLIYNSNIDDNG 333 (767)
Q Consensus 261 ~~~~~v~~G~~vsL~C~a~g~P~p~itW~~~g--~~l---~~-~s~~~~~-~~~~~~~~~g~~~~~s~L~I~nvs~sD~G 333 (767)
+....+.+|+.+.|.|.+.+.+.+.+.|+++. ... .. ....... ...+... .......|.|.++..+|.|
T Consensus 8 p~~~~v~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~---~~~~~~~L~I~~v~~~D~G 84 (213)
T 3nl4_L 8 PASVSEPVGGTVTIKCQASQSISSYLAWYQQKPGQRPRLLIYETSTLASGVPSRFKGS---GSGTDFTLTISDLECADAA 84 (213)
T ss_dssp CSEEEEETTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEE---EETTEEEEEECSCCGGGCE
T ss_pred CCeEEEcCCCCEEEEEEecCCCCceEEEEEECCCCCcEEEEEeCCccCCCCCccEEEe---cCCCEEEEEECCCChHHCE
Confidence 44567889999999999999999999998732 111 00 0000000 0111111 1123457999999999999
Q ss_pred ceeEeeccCCCC---cccceEEEEE
Q psy12044 334 TFVCVAENQAGS---TSSNYTIRIV 355 (767)
Q Consensus 334 tY~CvA~N~~G~---s~~s~sL~V~ 355 (767)
.|.|.+.|..+. ......+.|.
T Consensus 85 ~Y~C~~~~~~~~~~~~~~~~~l~V~ 109 (213)
T 3nl4_L 85 TYYCQSTYENPTYVSFGGGTEVGVK 109 (213)
T ss_dssp EEEEEECCSSTTTCEECCCEEEEEE
T ss_pred EEEEecCCCCceeEEeCCCeEEEEe
Confidence 999999998763 2334455553
No 358
>3sbw_C Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-H1, programmed death-1 ligand 1, complex, costimulatory, immune system; 2.28A {Homo sapiens} PDB: 3fn3_A 3bis_A 3bik_A
Probab=96.61 E-value=0.0027 Score=62.44 Aligned_cols=93 Identities=15% Similarity=0.291 Sum_probs=58.6
Q ss_pred cceeecccccccccccccccC-----CCcEEEeecCeeccCCCc--------ccccccceeecccCcceeeeEEEEeeec
Q psy12044 262 FYLEIQEGKNVSLLCKVSAIP-----EAKITWLFDGVPIQNESM--------SASESHAVYSTEEGTEIKKSELLIYNSN 328 (767)
Q Consensus 262 ~~~~v~~G~~vsL~C~a~g~P-----~p~itW~~~g~~l~~~s~--------~~~~~~~~~~~~~g~~~~~s~L~I~nvs 328 (767)
..+.+..|+.+.|.|.+.+.| .+.+.|.+++..+..... .........+...+.......|.|.++.
T Consensus 9 ~~v~~~~G~~v~L~C~~~~~p~~~~~~~~v~W~~~~~~v~~~~~g~~~~~~~~~~~~~r~~~~~~~~~~~~~~L~I~~v~ 88 (222)
T 3sbw_C 9 DLYVVEYGSNMTIECKFPVEKQLDLAALIVYWEMEDKNIIQFVHGEEDLKVQHSSYRQRARLLKDQLSLGNAALQITDVK 88 (222)
T ss_dssp SEEEEETTSCEEEEEECCCCSSCCTTTCEEEEEETTEEEEEEETTEECSSSSCGGGSSSEEECHHHHTTTEEEEEESSCC
T ss_pred ccEEEEcCCcEEEEeEecCCCCCCCccEEEEEEECCcEEEEEeCCccccccccccccCceEEccccccCCEEEEEEcCcc
Confidence 345778899999999987776 348999987533211100 0000011112111112235689999999
Q ss_pred cCCCCceeEeeccCCCCcccceEEEEE
Q psy12044 329 IDDNGTFVCVAENQAGSTSSNYTIRIV 355 (767)
Q Consensus 329 ~sD~GtY~CvA~N~~G~s~~s~sL~V~ 355 (767)
.+|.|.|.|.+.+ .|.....+.+.|.
T Consensus 89 ~~D~G~Y~C~~~~-~~~~~~~~~l~V~ 114 (222)
T 3sbw_C 89 LQDAGVYRCMISY-GGADYKRITVKVN 114 (222)
T ss_dssp GGGCEEEEEEEES-SSEEEEEEEEEEE
T ss_pred cccCeEEEEEEEe-CCCceeEEEEEEE
Confidence 9999999999998 5555555555555
No 359
>2jll_A NCAM2, neural cell adhesion molecule 2; immunoglobulin domain, immunoglobulin superfamily, transmembrane, phosphoprotein, membrane, glycoprotein; HET: NAG; 2.30A {Homo sapiens} PDB: 2xyc_A* 2jlk_A* 2doc_A
Probab=96.61 E-value=0.0015 Score=70.36 Aligned_cols=84 Identities=23% Similarity=0.391 Sum_probs=63.2
Q ss_pred ceeecccccccccccccccCCCcEEEeecCeeccCCCcccccccceeecccCcceeeeEEEEeeeccCCCCceeEeeccC
Q psy12044 263 YLEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCVAENQ 342 (767)
Q Consensus 263 ~~~v~~G~~vsL~C~a~g~P~p~itW~~~g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~GtY~CvA~N~ 342 (767)
...+..|+.+.|.|.+.+.|.+.+.|.+++..+...... .+.... ......|.|.++...|.|.|.|.|.|.
T Consensus 109 ~~~~~~g~~~~l~C~~~g~p~~~i~W~~~g~~l~~~~~~-----~~~~~~---~~~~~~L~i~~~~~~d~G~Y~C~a~N~ 180 (389)
T 2jll_A 109 IYYSWEGNPINISCDVKSNPPASIHWRRDKLVLPAKNTT-----NLKTYS---TGRKMILEIAPTSDNDFGRYNCTATNH 180 (389)
T ss_dssp EEEECTTCCEEEEECEEEESCCEEEEEETTEESSCTTCT-----TEEEEE---CSSCEEEEECCCSTTSSEEEEEEEEET
T ss_pred eEEeccCCEEEEEEEEEecCCCeEEEEECCccCCcccCc-----eEEEec---cCCEEEEEECCCChhhCEEEEEEEEcC
Confidence 345678999999999999999999999998776543211 111111 112457999999999999999999999
Q ss_pred CCCcccceEEEE
Q psy12044 343 AGSTSSNYTIRI 354 (767)
Q Consensus 343 ~G~s~~s~sL~V 354 (767)
.|.....+.+.+
T Consensus 181 ~G~~~~~~~l~v 192 (389)
T 2jll_A 181 IGTRFQEYILAL 192 (389)
T ss_dssp TEEEEEEEEEEE
T ss_pred CCcEEEEEEEEe
Confidence 998776665554
No 360
>3q0h_A T cell immunoreceptor with IG and ITIM domains; immune receptor, adhesion, structural genomics, NEW YORK STR genomics research consortium, nysgrc; 1.70A {Homo sapiens} PDB: 3rq3_A 3udw_A* 3ucr_A
Probab=96.60 E-value=0.00096 Score=59.94 Aligned_cols=88 Identities=15% Similarity=0.305 Sum_probs=57.2
Q ss_pred ceeecccccccccccccc--cCCCcEEEeecCeeccCCC------cccccccceeecccCcceeeeEEEEeeeccCCCCc
Q psy12044 263 YLEIQEGKNVSLLCKVSA--IPEAKITWLFDGVPIQNES------MSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGT 334 (767)
Q Consensus 263 ~~~v~~G~~vsL~C~a~g--~P~p~itW~~~g~~l~~~s------~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~Gt 334 (767)
.+.+..|+.++|.|...+ .....+.|.++...+.... .......++.+ .....|.|.++..+|.|.
T Consensus 12 ~v~~~~G~~v~L~C~~~~~~~~~~~v~W~k~~~~i~~~~~~~~~~~~~~~~~R~~~------~~~~sL~I~~v~~~D~G~ 85 (117)
T 3q0h_A 12 NISAEKGGSIILQCHLSSTTAQVTQVNWEQQDQLLAICNADLGWHISPSFKDRVAP------GPGLGLTLQSLTVNDTGE 85 (117)
T ss_dssp CEEEETTCCEEECEEEESCCCEEEEEEEEETTEEEEEEETTTEEECCGGGTTTEEE------CSTTCEEECSCCGGGCEE
T ss_pred CEEEecCCCEEEEEEecCCCCCEEEEEEEeCCEEEEEEECCCCceeCccccCcEEe------CCceEEEEeeCChhhCEE
Confidence 467789999999999876 3345789998654322110 00000111111 114579999999999999
Q ss_pred eeEeec-cCCCCcccceEEEEEe
Q psy12044 335 FVCVAE-NQAGSTSSNYTIRIVL 356 (767)
Q Consensus 335 Y~CvA~-N~~G~s~~s~sL~V~~ 356 (767)
|.|.+. +..|.....+.|.|..
T Consensus 86 Y~C~v~~~~~g~~~~~~~L~V~~ 108 (117)
T 3q0h_A 86 YFCIYHTYPDGTYTGRIFLEVLE 108 (117)
T ss_dssp EEEEEEEETTCCEEEEEEEEEEC
T ss_pred EEEEEEECCCCCeEEEEEEEEEc
Confidence 999864 4567666666776665
No 361
>2zg1_A Sialic acid-binding IG-like lectin 5; siglec-5 inhibitory receptor, two-domain structure, V-SET, C2-SET, IG-like domain, 6'-sialyllactose complex; HET: SIA; 2.70A {Homo sapiens} PDB: 2zg3_A* 2zg2_A
Probab=96.59 E-value=0.0021 Score=62.99 Aligned_cols=71 Identities=17% Similarity=0.386 Sum_probs=49.5
Q ss_pred eccccccccccccccc----CCCcEEEeecCeeccCCCcccccccceeecccCcceeeeEEEEeeeccCCCCceeEeecc
Q psy12044 266 IQEGKNVSLLCKVSAI----PEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCVAEN 341 (767)
Q Consensus 266 v~~G~~vsL~C~a~g~----P~p~itW~~~g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~GtY~CvA~N 341 (767)
+.+|+.+.|.|.+.+. |.|.++|.+++...... .....+.|.|..+...|.|.|+|.|.|
T Consensus 135 ~~~G~~v~L~C~~~~~~~~~p~p~v~W~~~~~~~~~~----------------~~~~~~~L~i~~~~~~~~g~Y~C~a~n 198 (214)
T 2zg1_A 135 LESGRPTRLSCSLPGSCEAGPPLTFSWTGNALSPLDP----------------ETTRSSELTLTPRPEDHGTNLTCQMKR 198 (214)
T ss_dssp CCTTCCEEEEEECTTCCSCSSCCEEEEESSTTSSSCS----------------SCCCSSEEEECCCTTCCSCEEEEEEEC
T ss_pred ccCCCeEEEEEEeccCCCCCCCceEEEeCCCCccCCC----------------CceeEEEEEEecccHHcCcEEEEEEEe
Confidence 5679999999999774 78999999977432110 012346789999988899999999999
Q ss_pred CCCCcccceEE
Q psy12044 342 QAGSTSSNYTI 352 (767)
Q Consensus 342 ~~G~s~~s~sL 352 (767)
..+.......+
T Consensus 199 ~~~~~~~~~~v 209 (214)
T 2zg1_A 199 QGAQVTTERTV 209 (214)
T ss_dssp C----CCEEEE
T ss_pred CCCCcceEEEE
Confidence 86554444333
No 362
>1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A {Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4
Probab=96.59 E-value=0.0017 Score=69.93 Aligned_cols=91 Identities=21% Similarity=0.335 Sum_probs=65.7
Q ss_pred CCCCCCccceeecccccccccccccc-cCCCcEEEeecCeeccCCCcccccccceeecccCcceeeeEEEEeeeccCCCC
Q psy12044 255 PQITPSTFYLEIQEGKNVSLLCKVSA-IPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNG 333 (767)
Q Consensus 255 P~i~~~~~~~~v~~G~~vsL~C~a~g-~P~p~itW~~~g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~G 333 (767)
|.+...+....+.+|+.+.|.|.+.+ .|.+.+.|.+++..+..... + .... ...+.|.|.++...|.|
T Consensus 7 P~~~~~p~~~~v~~G~~v~l~C~~~~~~p~~~v~W~k~g~~~~~~~~-----~-~~~~-----~~~~~L~i~~~~~~D~G 75 (395)
T 1bih_A 7 PVLKDQPAEVLFRENNPTVLECIIEGNDQGVKYSWKKDGKSYNWQEH-----N-AALR-----KDEGSLVFLRPQASDEG 75 (395)
T ss_dssp CEECCCCSEEEEETTSCEEECCCEESCCSSCEEEEEESSSBCCTTTT-----T-EEEC-----TTSCCEEESSCCGGGCE
T ss_pred CEeecCCCceEEeCCCEEEEEEEEecCCCCceEEEEECCcCcccccc-----e-EEEe-----cCCceEEEecCCCCCCc
Confidence 34444455677889999999999999 88999999998876643321 0 1111 12346999999999999
Q ss_pred ceeEeeccCCCCccc-ceEEEEEe
Q psy12044 334 TFVCVAENQAGSTSS-NYTIRIVL 356 (767)
Q Consensus 334 tY~CvA~N~~G~s~~-s~sL~V~~ 356 (767)
.|.|.+.|..|.... .+.+.+..
T Consensus 76 ~Y~C~a~n~~g~~~s~~~~l~v~~ 99 (395)
T 1bih_A 76 HYQCFAETPAGVASSRVISFRKTY 99 (395)
T ss_dssp EEEEEEEETTEEEECCCEEEEEEE
T ss_pred EEEEEEEeCCCeEEeEEEEEEEEE
Confidence 999999998876542 35555544
No 363
>1qfw_M FV, antibody (anti beta subunit) (light chain); glycoprotein hormone; HET: NAG; 3.50A {Mus musculus} SCOP: b.1.1.1
Probab=96.57 E-value=0.0029 Score=55.63 Aligned_cols=78 Identities=17% Similarity=0.227 Sum_probs=51.2
Q ss_pred cceeecccccccccccccccCCCcEEEeecC--e---eccCC-Cccccc-ccceeecccCcceeeeEEEEeeeccCCCCc
Q psy12044 262 FYLEIQEGKNVSLLCKVSAIPEAKITWLFDG--V---PIQNE-SMSASE-SHAVYSTEEGTEIKKSELLIYNSNIDDNGT 334 (767)
Q Consensus 262 ~~~~v~~G~~vsL~C~a~g~P~p~itW~~~g--~---~l~~~-s~~~~~-~~~~~~~~~g~~~~~s~L~I~nvs~sD~Gt 334 (767)
..+.+.+|+.++|.|.+.+.+.+.+.|.+.. . .+... ...... ..++... .......|.|.++..+|.|.
T Consensus 9 ~~~~v~~G~~v~L~C~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~r~~~~---~~~~~~~L~I~~v~~~DsG~ 85 (108)
T 1qfw_M 9 KSMSMSVGERVTLSCKASETVDSFVSWYQQKPEQSPKLLIFGASNRFSGVPDRFTGS---GSATDFTLTISSVQAEDFAD 85 (108)
T ss_dssp SCEECCTTCCEEEEEEESSCCCSCEEEEEECTTSCCEEEECSSSCBCTTCCTTEECC---BCSSEEEEEESSCCTTCCSE
T ss_pred CeEEEcCCCCEEEEeeeCCCCCcEEEEEEECCCCCCEEEEEEcCccCCCCCCcEEEE---cCCCEEEEEECCCChhhCEE
Confidence 3467889999999999988888899998742 1 11111 000000 1111111 12234689999999999999
Q ss_pred eeEeeccC
Q psy12044 335 FVCVAENQ 342 (767)
Q Consensus 335 Y~CvA~N~ 342 (767)
|.|.+.+.
T Consensus 86 Y~C~~~~~ 93 (108)
T 1qfw_M 86 YHCGQTYN 93 (108)
T ss_dssp EEEEECSS
T ss_pred EEEEEccC
Confidence 99999875
No 364
>3rjd_A High affinity immunoglobulin gamma FC receptor I; immune system; HET: NAG MAN FUC P33; 2.65A {Homo sapiens}
Probab=96.55 E-value=0.0022 Score=64.61 Aligned_cols=73 Identities=19% Similarity=0.463 Sum_probs=57.1
Q ss_pred ccceeecccccccccccccccCCC-cEEEeecCeeccCCCcccccccceeecccCcceeeeEEEEeeeccCCCCceeEee
Q psy12044 261 TFYLEIQEGKNVSLLCKVSAIPEA-KITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCVA 339 (767)
Q Consensus 261 ~~~~~v~~G~~vsL~C~a~g~P~p-~itW~~~g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~GtY~CvA 339 (767)
+....+.+|+.+.|.|.+.+.+.+ .+.|.+++..+... ...|.|.++...|.|.|.|.+
T Consensus 8 p~~~~v~~G~~v~l~C~~~~~~~~~~~~W~~~g~~~~~~--------------------~~~l~i~~~~~~d~G~Y~C~~ 67 (262)
T 3rjd_A 8 PPWVSVFQEETVTLHCEVLHLPGSSSTQWFLNGTATQTS--------------------TPSYRITSASVNDSGEYRCQR 67 (262)
T ss_dssp SCCSEEETTCCEEEEEECSSCCCTTCEEEEETTEECSCC--------------------SSEEEESSCCGGGCEEEEEEE
T ss_pred CCcEEeeCCCeEEEEEECCCCCCCceEEEEECCEEeecc--------------------CCeEEEecCCcccCeEEEEEE
Confidence 344567899999999999999888 99999988765422 246899999999999999999
Q ss_pred ccCCCCcccceEEEEE
Q psy12044 340 ENQAGSTSSNYTIRIV 355 (767)
Q Consensus 340 ~N~~G~s~~s~sL~V~ 355 (767)
.|..+.. .+.+.|.
T Consensus 68 ~~~~~s~--~~~l~v~ 81 (262)
T 3rjd_A 68 GLSGRSD--PIQLEIH 81 (262)
T ss_dssp SSSCCCC--CEEEEEE
T ss_pred ecCCccc--cEEEEEe
Confidence 9876543 3444443
No 365
>2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion, membrane, development protein; HET: NAG; 1.95A {Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A*
Probab=96.54 E-value=0.0017 Score=69.87 Aligned_cols=85 Identities=20% Similarity=0.420 Sum_probs=61.0
Q ss_pred eeecccccccccccccccCCCcEEEeecCeeccCCCcccccccceeecccCcceeeeEEEEeeeccCCCCceeEeeccCC
Q psy12044 264 LEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCVAENQA 343 (767)
Q Consensus 264 ~~v~~G~~vsL~C~a~g~P~p~itW~~~g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~GtY~CvA~N~~ 343 (767)
..+..|..+.|.|.+.+.|.+.+.|.+++............ .......+.|.|.++...|.|.|.|.|.|..
T Consensus 222 ~~v~~G~~v~l~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~--------~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~ 293 (388)
T 2v5m_A 222 LELMVAHTISLLCPAQGFPAPSFRWYKFIEGTTRKQAVVLN--------DRVKQVSGTLIIKDAVVEDSGKYLCVVNNSV 293 (388)
T ss_dssp EEEETTSCEEECCCCEEESCCEEEEEEECTTSSCEEECCCS--------SSEEEETTEEEESSCCGGGCEEEEEEEECSS
T ss_pred eEEeeCCcEEEEEECCCCCCCEEEEEecCCCCccccccccc--------CceecccCEEEECcCCHHHCeEEEEEEecCC
Confidence 45678999999999999999999999964322111000000 0111224579999999999999999999999
Q ss_pred CCcccceEEEEEe
Q psy12044 344 GSTSSNYTIRIVL 356 (767)
Q Consensus 344 G~s~~s~sL~V~~ 356 (767)
|.....+.+.|..
T Consensus 294 g~~~~~~~l~V~~ 306 (388)
T 2v5m_A 294 GGESVETVLTVTA 306 (388)
T ss_dssp CEEEEEEEEEEEE
T ss_pred CceeEEEEEEEeC
Confidence 9877777666654
No 366
>1xau_A B- and T-lymphocyte attenuator; IG domain, beta sandwich, structural genomics, PSI, protein structure initiative; 1.80A {Mus musculus} SCOP: b.1.1.4
Probab=96.54 E-value=0.0033 Score=55.52 Aligned_cols=84 Identities=17% Similarity=0.217 Sum_probs=54.7
Q ss_pred ceeecccccccccccccc-cCCCcEEEeecCe-eccCCCcccccccceeecccCcceeeeEEEEeeeccCCCCceeEeec
Q psy12044 263 YLEIQEGKNVSLLCKVSA-IPEAKITWLFDGV-PIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCVAE 340 (767)
Q Consensus 263 ~~~v~~G~~vsL~C~a~g-~P~p~itW~~~g~-~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~GtY~CvA~ 340 (767)
...+..|+.+.|.|.+.+ .+.|.++|.+.+. ........ .................|++..+..+|+|.|.|.|.
T Consensus 23 ~~tv~~G~~~~LeCpv~yc~~rPnVtWcK~~~~~c~~L~~~---~q~~~~w~e~~n~s~fiL~f~~V~~sDsG~YrCsAn 99 (122)
T 1xau_A 23 KHSAWTGELFKIECPVKYCVHRPNVTWCKHNGTIWVPLEVG---PQLYTSWEENRSVPVFVLHFKPIHLSDNGSYSCSTN 99 (122)
T ss_dssp EEEECTTSCEEEEEEEECSSSCCCEEEEEECSSSEEECCCB---TTEEEEEECSSSSCEEEEEETTCCGGGCEEEEEEEE
T ss_pred cEEEecCCeEEEEeEecCCCCCCcEEEEecCCeeccccccc---eeeecceeccCCceeEEEEEeeEEEcCCccEEEEee
Confidence 346778999999999966 5799999998542 11111000 000001111111234579999999999999999999
Q ss_pred cCCCCcccc
Q psy12044 341 NQAGSTSSN 349 (767)
Q Consensus 341 N~~G~s~~s 349 (767)
+..|...+.
T Consensus 100 ~~~g~ieSH 108 (122)
T 1xau_A 100 FNSQVINSH 108 (122)
T ss_dssp ETTEEEECC
T ss_pred CCCCceeee
Confidence 988876664
No 367
>2pet_A Lutheran blood group glycoprotein; immunoglobulin superfamily., cell adhesion; 1.70A {Homo sapiens} PDB: 2pf6_A
Probab=96.54 E-value=0.0014 Score=64.80 Aligned_cols=80 Identities=21% Similarity=0.297 Sum_probs=52.7
Q ss_pred ceeecccccc-cccccc-cccCCCcEEEeecCeeccCCCcccccccc---eeecccCcceeeeEEEEeeeccCCCCceeE
Q psy12044 263 YLEIQEGKNV-SLLCKV-SAIPEAKITWLFDGVPIQNESMSASESHA---VYSTEEGTEIKKSELLIYNSNIDDNGTFVC 337 (767)
Q Consensus 263 ~~~v~~G~~v-sL~C~a-~g~P~p~itW~~~g~~l~~~s~~~~~~~~---~~~~~~g~~~~~s~L~I~nvs~sD~GtY~C 337 (767)
...+..|..+ .|.|.+ .+.|.+.+.|.+++..+............ ......+.....+.|.+......|.|.|+|
T Consensus 127 ~~~~~~g~~~~~l~C~~~~~~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~L~i~~~~~dd~g~Y~C 206 (231)
T 2pet_A 127 TLSVMEDSAQEIATCNSRNGNPAPKITWYRNGQRLEVPVEMNPEGYMTSRTVREASGLLSLTSTLYLRLRKDDRDASFHC 206 (231)
T ss_dssp SCCTTCCSEEEEEEEEEEEEBSCCEEEEEETTEECCCCSSCCSSEEEEEEEEECTTSCEEEEEEEEEECCGGGGGCEEEE
T ss_pred ceeecCCCceEEEEEEeECcccCCEEEEEECCccCccccccccceeecceeEecCCCeEEEEEEEEEecchhhCCceEEE
Confidence 3445678777 999999 89999999999998877654411111110 011122333344678887555556999999
Q ss_pred eeccC
Q psy12044 338 VAENQ 342 (767)
Q Consensus 338 vA~N~ 342 (767)
.|.|.
T Consensus 207 ~a~n~ 211 (231)
T 2pet_A 207 AAHYS 211 (231)
T ss_dssp EEEEE
T ss_pred EEEcC
Confidence 99995
No 368
>2vsd_A CHIR AB1; immune system receptor, FC receptor; HET: NAG NDG MAN; 1.82A {Gallus gallus}
Probab=96.53 E-value=0.0012 Score=58.05 Aligned_cols=65 Identities=20% Similarity=0.385 Sum_probs=47.6
Q ss_pred eecccccccccccccccCCCcEEEeecCeeccCCCcccccccceeecccCcceeeeEEEEeeeccCCCCceeEeeccCC
Q psy12044 265 EIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCVAENQA 343 (767)
Q Consensus 265 ~v~~G~~vsL~C~a~g~P~p~itW~~~g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~GtY~CvA~N~~ 343 (767)
.+..|++++|.|.+.+.+ ..+.|++++........ ........|.|.+++.+|.|.|.|.+.|..
T Consensus 15 ~v~~G~~VtL~C~~~~~~-~~~~w~k~g~~~~~~~~-------------~~~~~~~~l~I~~v~~~dsG~Y~C~~~n~~ 79 (105)
T 2vsd_A 15 GVSLGDTVTLRCHLPRMA-AWVQLWLNGTLRFDKEK-------------DKEQDAAEFSFAVTNLEDAGTYQCRYQVSE 79 (105)
T ss_dssp SCCTTCEEEEEEECCSSC-EEEEEEETTEEEEEEEE-------------CTTCSEEEEEEECCSGGGCEEEEEEEEEET
T ss_pred CcCcCCCEEEEEEcCCCC-cEEEEEECCccceeeec-------------cCCCCEEEEEECCCCHHHCeEEEEEEEcCC
Confidence 567899999999987653 57889888765432110 012234679999999999999999998853
No 369
>1z7z_I Intercellular adhesion molecule-1; ICAM-1,kilifi,CD54,human coxsackievirus A21, cryo-electron microscopy,virus-receptor complex, icosahedral virus; HET: NAG NDG; 8.00A {Homo sapiens} SCOP: b.1.1.3 b.1.1.3 b.1.1.4 b.1.1.4 b.1.1.4
Probab=96.53 E-value=0.0016 Score=71.97 Aligned_cols=71 Identities=20% Similarity=0.318 Sum_probs=55.7
Q ss_pred cceeecccccccccccccccCCCcEEEeecCeeccCCCcccccccceeecccCcceeeeEEEEeeeccCCCCceeEeecc
Q psy12044 262 FYLEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCVAEN 341 (767)
Q Consensus 262 ~~~~v~~G~~vsL~C~a~g~P~p~itW~~~g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~GtY~CvA~N 341 (767)
....+.+|..+.|.|.+.+.|.|.+.|.+++..+... +. .+ .+...|.|.|.|.|.|
T Consensus 378 ~~~~~~~g~~~~l~C~~~g~P~p~i~W~~~g~~~~~~---------------g~-----~~---~v~~~d~G~Y~C~a~N 434 (450)
T 1z7z_I 378 GNWTWPENSQQTPMCQAWGNPLPELKCLKDGTFPLPI---------------GE-----SV---TVTRDLEGTYLCRARS 434 (450)
T ss_dssp SEEEEETTCEECCCCCCEEESCCEEEEEETTTEECCT---------------TS-----CE---ECCGGGCEEEEEEEEE
T ss_pred CceeEcCCCeEEEEEecccCCCCcEEEEECCcccCCC---------------CC-----eE---eEehhhCeEEEEEEEe
Confidence 3457788999999999999999999999987632111 10 11 5778999999999999
Q ss_pred CCCCcccceEEEEE
Q psy12044 342 QAGSTSSNYTIRIV 355 (767)
Q Consensus 342 ~~G~s~~s~sL~V~ 355 (767)
..|.....+.+.|.
T Consensus 435 ~~G~~~~~~~l~V~ 448 (450)
T 1z7z_I 435 TQGEVTREVTVNVL 448 (450)
T ss_dssp TTEEEEEEEEEEEE
T ss_pred CCCceeEEEEEEEE
Confidence 99998887777664
No 370
>1gsm_A Madcam-1, mucosal addressin cell adhesion molecule-1; cell adhesion protein, immunoglobulin fold, I-SET fold, cell adhesion glycoprotein; 1.9A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1bqs_A*
Probab=96.53 E-value=0.0018 Score=64.80 Aligned_cols=78 Identities=21% Similarity=0.349 Sum_probs=58.3
Q ss_pred ceeecccccccccccccccCCC--cEEEeecCeeccCCCcccccccceeecccCcceeeeEEEEeeeccCCCCceeEeec
Q psy12044 263 YLEIQEGKNVSLLCKVSAIPEA--KITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCVAE 340 (767)
Q Consensus 263 ~~~v~~G~~vsL~C~a~g~P~p--~itW~~~g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~GtY~CvA~ 340 (767)
.+.+..|..+.|.|.+ +.|.| .|.|......+. .... ......|.|.+++.+|.|.|.|.+.
T Consensus 16 ~v~v~~G~sv~L~C~a-~~p~P~~~i~W~~~~~~l~----------~~~~-----~~~~~~L~I~~v~~~d~G~Y~C~a~ 79 (210)
T 1gsm_A 16 VVAVALGASRQLTCRL-ACADRGASVQWRGLDTSLG----------AVQS-----DTGRSVLTVRNASLSAAGTRVCVGS 79 (210)
T ss_dssp EEEEETTCCEEEEEEE-CCSSTTCEEEEESSTTTTC----------CEEE-----ESSEEEEEECSCCGGGCEEEEEEEE
T ss_pred ceEEeCCCCEEEEEEC-CCCCCCcceEEeecccccC----------cEEe-----cCCccEEEECccCcccCceEEEEEE
Confidence 3578899999999999 99888 999998432220 0110 1234679999999999999999999
Q ss_pred cCCCCcccceEEEEEe
Q psy12044 341 NQAGSTSSNYTIRIVL 356 (767)
Q Consensus 341 N~~G~s~~s~sL~V~~ 356 (767)
|..+.....+.+.|..
T Consensus 80 n~~~~~~~~~~ltV~~ 95 (210)
T 1gsm_A 80 CGGRTFQHTVQLLVYA 95 (210)
T ss_dssp ETTEEEEEEEEEEEEB
T ss_pred eCCCceEEEEEEEEEe
Confidence 9887766666666654
No 371
>3oq3_B IFN-alpha/beta binding protein C12R; mousepox virus, moscow strain, cytokine decoy RE virus/viral protein, type-1 interferon, soluble A/B-IFNR; HET: EPE; 2.10A {Ectromelia virus}
Probab=96.53 E-value=0.0026 Score=67.32 Aligned_cols=72 Identities=15% Similarity=0.294 Sum_probs=55.3
Q ss_pred eecccccccccccccccC-CCcEEEeecCeeccCCCcccccccceeecccCcceeeeEEEEeeeccCCCCceeEeeccC-
Q psy12044 265 EIQEGKNVSLLCKVSAIP-EAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCVAENQ- 342 (767)
Q Consensus 265 ~v~~G~~vsL~C~a~g~P-~p~itW~~~g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~GtY~CvA~N~- 342 (767)
.+.+|..+.|.|.+.+.| .+.+.|.+++..+..... + +. .....|.|.++..+|.|.|+|.+.|.
T Consensus 139 ~~~~G~~v~L~C~~~g~p~~~~i~W~k~~~~l~~~~~-----~-~~-------~~~~~L~I~~v~~~D~G~Y~C~a~n~~ 205 (329)
T 3oq3_B 139 GTHDKYGIDLYCGILYAKHYNNITWYKNNQELIIDGT-----K-YS-------QSGQNLIIHNPELEDSGRYDCYVHYDD 205 (329)
T ss_dssp TSSTTTCEEEECCCCSCCCCCEEEEEETTEECCCSSS-----S-EE-------EETTEEEECSCCGGGCEEEEEEEEECC
T ss_pred EEeCCCcEEEEeccCCCCCCceEEEEECCccCCCCCc-----e-Ee-------cCCCEEEEeecChhhCEEEEEEEEecc
Confidence 456799999999999999 999999998877632111 0 11 11367999999999999999999987
Q ss_pred -CCCcccc
Q psy12044 343 -AGSTSSN 349 (767)
Q Consensus 343 -~G~s~~s 349 (767)
.|.....
T Consensus 206 ~~g~~~~~ 213 (329)
T 3oq3_B 206 VRIKNDIV 213 (329)
T ss_dssp TTSSSCEE
T ss_pred cCCCceeE
Confidence 6665554
No 372
>1hng_A CD2; T lymphocyte adhesion glycoprotein; 2.80A {Rattus rattus} SCOP: b.1.1.1 b.1.1.3
Probab=96.53 E-value=0.0017 Score=62.52 Aligned_cols=87 Identities=17% Similarity=0.152 Sum_probs=57.1
Q ss_pred ceeecccccccccccccc--cCCCcEEEeecCeeccCCCc---ccccccceeecccCcceeeeEEEEeeeccCCCCceeE
Q psy12044 263 YLEIQEGKNVSLLCKVSA--IPEAKITWLFDGVPIQNESM---SASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVC 337 (767)
Q Consensus 263 ~~~v~~G~~vsL~C~a~g--~P~p~itW~~~g~~l~~~s~---~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~GtY~C 337 (767)
.+.+.+|+.+.|.|.... .+.+.+.|.+++..+..... .......+... ..+.|.|.++..+|.|.|.|
T Consensus 5 ~v~~~~G~~v~L~c~~~~~~~~~~~i~W~k~~~~i~~~~~~~~~~~~~~r~~~~------~~gsL~I~~v~~~D~G~Y~C 78 (176)
T 1hng_A 5 TVWGALGHGINLNIPNFQMTDDIDEVRWERGSTLVAEFKRKMKPFLKSGAFEIL------ANGDLKIKNLTRDDSGTYNV 78 (176)
T ss_dssp EEEEETTSCEEECCTTCCCCTTEEEEEEEETTEEEEEEETTSCCEESSTTEEEC------TTSCEEESSCCGGGCEEEEE
T ss_pred EEEEEcCCcEEEcCCCCCcccccccEEEEeCCceeEEEcCCCeecCCCCeEEEC------CCCcEEEcccccccCEEEEE
Confidence 356678999999996544 56779999998764431110 00011111111 12459999999999999999
Q ss_pred eeccCCCCc--ccceEEEEE
Q psy12044 338 VAENQAGST--SSNYTIRIV 355 (767)
Q Consensus 338 vA~N~~G~s--~~s~sL~V~ 355 (767)
.+.|..|.. ...+.+.|.
T Consensus 79 ~~~n~~g~~~~~~~~~l~V~ 98 (176)
T 1hng_A 79 TVYSTNGTRILNKALDLRIL 98 (176)
T ss_dssp EEEETTCCEEEEEEEEEEEE
T ss_pred EEEeCCCCEEEEEEEEEEEe
Confidence 999998886 444555444
No 373
>4dkd_C Macrophage colony-stimulating factor 1 receptor; dimeric four-helix bundle cytokine, receptor tyrosine kinase glycosylation; HET: NAG BMA; 3.00A {Homo sapiens}
Probab=96.53 E-value=0.0012 Score=67.92 Aligned_cols=87 Identities=18% Similarity=0.259 Sum_probs=58.7
Q ss_pred ceeecccccccccccccccCC-CcEEEeecCeeccCCCcccccccceeecccCcceeeeEEEEeeeccCCCCceeEeecc
Q psy12044 263 YLEIQEGKNVSLLCKVSAIPE-AKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCVAEN 341 (767)
Q Consensus 263 ~~~v~~G~~vsL~C~a~g~P~-p~itW~~~g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~GtY~CvA~N 341 (767)
...+..|..+.|.|.+.+.+. +.+.|..++..+...... .+ ..+.....+.|.|.++..+|.|.|+|.|.|
T Consensus 195 ~~~~~~g~~v~l~C~~~~~~~~~~~~w~~~~~~~~~~~~~-------~~-~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N 266 (292)
T 4dkd_C 195 ELVRIRGEAAQIVCSASSVDVNFDVFLQHNNTKLAIPQQS-------DF-HNNRYQKVLTLNLDQVDFQHAGNYSCVASN 266 (292)
T ss_dssp CBCCCSSSCEEEEEEEEESSSCCEEECCBSSCCCCCCBEE-------EE-ETTEEEEEEEEEESSCCTTSCEEEEEEEEC
T ss_pred ceeEecCCCEEEEEEecCCCCceEEEEeCCCcccccCccc-------ee-ccceeeeEEEEEECccChhcCeEEEEEEec
Confidence 344568999999999998775 456776666544221110 00 111123456899999999999999999999
Q ss_pred CCCCcccceEEEEEee
Q psy12044 342 QAGSTSSNYTIRIVLK 357 (767)
Q Consensus 342 ~~G~s~~s~sL~V~~~ 357 (767)
..|.....+.+.|..+
T Consensus 267 ~~g~~~~~~~l~V~~~ 282 (292)
T 4dkd_C 267 VQGKHSTSMFFRVVES 282 (292)
T ss_dssp SSCEEEEEEEECC---
T ss_pred CCCCceeEEEEEEeeC
Confidence 9999877776666543
No 374
>2y25_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin-like D; 3.50A {Homo sapiens}
Probab=96.52 E-value=0.0012 Score=68.63 Aligned_cols=73 Identities=26% Similarity=0.346 Sum_probs=56.3
Q ss_pred ceeeccccccccccccccc-CCCcEEEeecCeeccCCCcccccccceeecccCcceeeeEEEEeeeccCCCCceeEeecc
Q psy12044 263 YLEIQEGKNVSLLCKVSAI-PEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCVAEN 341 (767)
Q Consensus 263 ~~~v~~G~~vsL~C~a~g~-P~p~itW~~~g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~GtY~CvA~N 341 (767)
...+.+|+.+.|.|.+.+. |.+.+.|.+++..+...... .. ......|.|.++...|.|.|.|.+.|
T Consensus 15 ~~~v~~G~~v~l~C~~~~~~p~~~v~W~~~~~~~~~~~~~-------~~-----~~~~~~L~i~~~~~~d~G~Y~C~~~n 82 (317)
T 2y25_A 15 SWEVTGECNVLLKCKVANIKKETHIVWYKDEREISVDEKH-------DF-----KDGICTLLITEFSKKDAGIYEVILKD 82 (317)
T ss_dssp EEEEETTTEEEEEEEEESCCTTCEEEEEETTEEECCSCC-----------------CCEEEEETTCCSTTCSCEEEEEES
T ss_pred eEEECCCCeEEEEEEEcCCCCCCEEEEEECCeEcCCCCcE-------EE-----ECCeEEEEEccCCcccCeEEEEEEEC
Confidence 4678899999999999887 78999999998776532211 00 12346899999999999999999999
Q ss_pred CCCCcc
Q psy12044 342 QAGSTS 347 (767)
Q Consensus 342 ~~G~s~ 347 (767)
..|...
T Consensus 83 ~~g~~~ 88 (317)
T 2y25_A 83 DRGKDK 88 (317)
T ss_dssp SSCEEE
T ss_pred CCCcEE
Confidence 887543
No 375
>3ry4_A Low affinity immunoglobulin gamma FC region recep; FC receptor, CD32, immunoglobulin superfamily, low responder polymorphism, cell membrane; HET: NAG; 1.50A {Homo sapiens} PDB: 1fcg_A 3ry5_A 1h9v_A 3d5o_F* 3ry6_C* 2fcb_A
Probab=96.52 E-value=0.0029 Score=59.54 Aligned_cols=71 Identities=18% Similarity=0.478 Sum_probs=53.3
Q ss_pred ceeecccccccccccccccC-CCcEEEeecCeeccCCCcccccccceeecccCcceeeeEEEEeeeccCCCCceeEeecc
Q psy12044 263 YLEIQEGKNVSLLCKVSAIP-EAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCVAEN 341 (767)
Q Consensus 263 ~~~v~~G~~vsL~C~a~g~P-~p~itW~~~g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~GtY~CvA~N 341 (767)
...+.+|+.+.|.|.+.+.| .+.+.|.+++..+... ...+.+.++...|.|.|.|.+.+
T Consensus 13 ~~~v~~G~~v~l~C~~~~~p~~~~~~W~~~g~~~~~~--------------------~~~~~~~~~~~~d~G~Y~C~~~~ 72 (170)
T 3ry4_A 13 WINVLQEDSVTLTCQGARSPESDSIQWFHNGNLIPTH--------------------TQPSYRFKANNNDSGEYTCQTGQ 72 (170)
T ss_dssp CSEEETTCEEEEEEESCCCSSSSCEEEEETTEECTTC--------------------CSSEEEEECCGGGCEEEEEEETT
T ss_pred CeEEECCCcEEEEEEecCCCCcceEEEEECCeEcccC--------------------ccceEEEecccccCeEEEEEEeC
Confidence 34678899999999999987 6799999988766432 12356778999999999999997
Q ss_pred CCCCcccceEEEEE
Q psy12044 342 QAGSTSSNYTIRIV 355 (767)
Q Consensus 342 ~~G~s~~s~sL~V~ 355 (767)
..+.. .+.+.|.
T Consensus 73 ~~~s~--~~~l~v~ 84 (170)
T 3ry4_A 73 TSLSD--PVHLTVL 84 (170)
T ss_dssp SBCCC--CEEEEEE
T ss_pred CCceE--eEEEEEE
Confidence 54433 3444444
No 376
>1ccz_A Protein (CD58); LFA-3, glycoprotein; HET: NAG; 1.80A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1ci5_A 1qa9_B
Probab=96.52 E-value=0.0017 Score=62.29 Aligned_cols=86 Identities=15% Similarity=0.169 Sum_probs=57.3
Q ss_pred ceeecccccccccccccccCCCcEEEeecCeeccCCCcccc-----cccceeecccCcceeeeEEEEeeeccCCCCceeE
Q psy12044 263 YLEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSAS-----ESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVC 337 (767)
Q Consensus 263 ~~~v~~G~~vsL~C~a~g~P~p~itW~~~g~~l~~~s~~~~-----~~~~~~~~~~g~~~~~s~L~I~nvs~sD~GtY~C 337 (767)
.+.+..|+.++|.|.+.. |.+.+.|.+++..+........ ...+..+ ....+.|.|.++...|.|.|.|
T Consensus 4 ~v~~~~G~~VtL~c~~~~-~~~~i~W~~~~~~i~~~~~~~~~~~~~~~~R~~~-----~~~~~sL~I~~v~~~DsG~Y~C 77 (171)
T 1ccz_A 4 QIYGVVYGNVTFHVPSNV-PLKEVLWKKQKDKVAELENSEFRAFSSFKNRVYL-----DTVSGSLTIYNLTSSDEDEYEM 77 (171)
T ss_dssp EEEEETTCCEEECCCCSS-CCSCEEEEETTEEEEEEETTEEEECGGGTTSEEE-----CTTTCCEEECSCCGGGCEEEEE
T ss_pred EEEEEcCCCEEEcCCCCC-CcceEEEEeCCcEEEEEcCCCcccccccCCcEEE-----eCCCCeEEECCCChhhCceEEE
Confidence 356778999999999854 8899999997654321110000 0001111 0134679999999999999999
Q ss_pred eeccCCCCcccceEEEEEe
Q psy12044 338 VAENQAGSTSSNYTIRIVL 356 (767)
Q Consensus 338 vA~N~~G~s~~s~sL~V~~ 356 (767)
.+.|..| ...+.+.|..
T Consensus 78 ~~~n~~~--~~~~~L~V~~ 94 (171)
T 1ccz_A 78 ESPNITD--TMKFFLYVLE 94 (171)
T ss_dssp ECTTCCS--CEEEEEEEEC
T ss_pred EEeCCCC--cEEEEEEEEC
Confidence 9999877 4555665543
No 377
>2wng_A Tyrosine-protein phosphatase non-receptor type substrate 1; signal regulatory protein alpha, immunoglobulin superfamily, phosphoprotein; HET: NAG; 2.49A {Homo sapiens}
Probab=96.52 E-value=0.0028 Score=66.81 Aligned_cols=86 Identities=21% Similarity=0.344 Sum_probs=56.4
Q ss_pred Cccceeeccccccccccccccc-CCCcEEEeecCeeccCCCcccc--cccceeecccC--cceeeeEEEEeeeccCCCCc
Q psy12044 260 STFYLEIQEGKNVSLLCKVSAI-PEAKITWLFDGVPIQNESMSAS--ESHAVYSTEEG--TEIKKSELLIYNSNIDDNGT 334 (767)
Q Consensus 260 ~~~~~~v~~G~~vsL~C~a~g~-P~p~itW~~~g~~l~~~s~~~~--~~~~~~~~~~g--~~~~~s~L~I~nvs~sD~Gt 334 (767)
.+....+.+|+.+.|.|.+.+. |.+.+.|++++......-.... ....+...... .......|.|.++..+|.|.
T Consensus 9 ~p~~~~v~~G~~v~L~C~~~~~~p~~~v~W~k~~~~~~~~i~~~~~~~~~r~~~~~~~~~~~~~~~~L~I~~v~~~D~G~ 88 (327)
T 2wng_A 9 PDKSVSVAAGESAILHCTVTSLIPVGPIQWFRGAGPARELIYNQKEGHFPRVTTVSESTKRENMDFSISISNITPADAGT 88 (327)
T ss_dssp CCSEEEEETTSCEEECCEESCCCSCCCEEEEESCSTTCEEEEETTSSCCTTEEECC---CTTCCBCCEEECSCCGGGCEE
T ss_pred CCCceEEecCCcEEEEEEccCcCCCceEEEEECCCCCceEEEEcCCCCcceeeeecccccccCceeEEEEccCccccCeE
Confidence 3456788899999999999987 8899999997643210000000 00011111111 11345679999999999999
Q ss_pred eeEeeccCCCC
Q psy12044 335 FVCVAENQAGS 345 (767)
Q Consensus 335 Y~CvA~N~~G~ 345 (767)
|.|.+.|..+.
T Consensus 89 Y~C~a~n~~~~ 99 (327)
T 2wng_A 89 YYCVKFRKGSP 99 (327)
T ss_dssp EEEEEEESSTT
T ss_pred EEEEeecCCCc
Confidence 99999998664
No 378
>1h5b_A Murine T cell receptor (TCR) valpha domain; immune response, immunoglobulin fold; 1.85A {Mus musculus} SCOP: b.1.1.1 PDB: 1h5b_C 1h5b_B
Probab=96.52 E-value=0.0022 Score=56.89 Aligned_cols=83 Identities=22% Similarity=0.424 Sum_probs=52.3
Q ss_pred ccceeecccccccccccccccCCCcEEEeecC--ee---ccCCCcccccccceeecccCcceeeeEEEEeeeccCCCCce
Q psy12044 261 TFYLEIQEGKNVSLLCKVSAIPEAKITWLFDG--VP---IQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTF 335 (767)
Q Consensus 261 ~~~~~v~~G~~vsL~C~a~g~P~p~itW~~~g--~~---l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~GtY 335 (767)
+..+.+.+|+.++|.|.+.+.+ +.+.|++.. .. +...........++.............|.|.++..+|.|.|
T Consensus 8 p~~~~v~~G~~v~L~C~~~~~~-~~v~W~r~~~~~~~~~l~~~~~~~~~~~r~~~~~~~~~~~~~~L~I~~v~~~DsG~Y 86 (113)
T 1h5b_A 8 PSALSLHEGTDSALRCNFTTTM-RSVQWFRQNSRGSLISLFYLASGTKENGRLKSAFDSERARYSTLHIRDAQLEDSGTY 86 (113)
T ss_dssp CSEEEEETTCCEEEEEEESSCC-SEEEEEEECTTSCEEEEEEESSSEEEETTEEEECCSSSSSEEEEEECSCCGGGCEEE
T ss_pred CCEEEEecCCcEEEEEEECCCC-ceEEEEEECCCCCeEEEEEECCCCccCCceEEEEccCCCCEEEEEECCCChhhCEEE
Confidence 3456788999999999988755 689998742 11 10000000001112222111133456899999999999999
Q ss_pred eEeeccCCC
Q psy12044 336 VCVAENQAG 344 (767)
Q Consensus 336 ~CvA~N~~G 344 (767)
.|.+.|..|
T Consensus 87 ~C~~~n~~~ 95 (113)
T 1h5b_A 87 FCAAEASSG 95 (113)
T ss_dssp EEEEECSSS
T ss_pred EEEEecCCC
Confidence 999998765
No 379
>2gi7_A GPVI protein; IG-like domains, blood clotting, cell adhesion; 2.40A {Homo sapiens}
Probab=96.49 E-value=0.0024 Score=61.53 Aligned_cols=67 Identities=15% Similarity=0.265 Sum_probs=50.4
Q ss_pred eeecccccccccccccccCCCcEEEeecCeeccCCCcccccccceeecccCcceeeeEEEEeeeccCCCCceeEeeccCC
Q psy12044 264 LEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCVAENQA 343 (767)
Q Consensus 264 ~~v~~G~~vsL~C~a~g~P~p~itW~~~g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~GtY~CvA~N~~ 343 (767)
..+.+|+.+.|.|.+.+.+ +.+.|++++..+..... .......|.|.++..+|.|.|.|.|.|..
T Consensus 103 ~~v~~G~~v~l~C~~~~~~-~~~~w~k~g~~~~~~~~--------------~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~ 167 (184)
T 2gi7_A 103 PAVSSGGDVTLQCQTRYGF-DQFALYKEGDPAPYKNP--------------ERWYRASFPIITVTAAHSGTYRCYSFSSR 167 (184)
T ss_dssp CSSCCTTCEEEEEECSSCC-CEEEEEECCCCTTSCCC--------------CEEEEESSSEEEETTCCSEEEEEEEECTT
T ss_pred ceecCCCcEEEEEEcCCCC-cEEEEEECCCcCcceec--------------CCCceEEEEEccCCccCCeEEEEEEEeCC
Confidence 3566899999999987654 69999998766543110 12234578899999999999999999976
Q ss_pred CC
Q psy12044 344 GS 345 (767)
Q Consensus 344 G~ 345 (767)
+.
T Consensus 168 ~~ 169 (184)
T 2gi7_A 168 DP 169 (184)
T ss_dssp ST
T ss_pred CC
Confidence 53
No 380
>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster}
Probab=96.48 E-value=0.0015 Score=78.21 Aligned_cols=86 Identities=21% Similarity=0.342 Sum_probs=62.9
Q ss_pred ceeecccccccccccccccCCCcEEEeecCeeccCCCcccccccceeecccCcceeeeEEEEeeeccCCCCceeEeeccC
Q psy12044 263 YLEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCVAENQ 342 (767)
Q Consensus 263 ~~~v~~G~~vsL~C~a~g~P~p~itW~~~g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~GtY~CvA~N~ 342 (767)
...+..|..+.|.|.+.+.|.|.++|.+++..+.......... .......++|.|.++..+|.|.|.|.|.|.
T Consensus 723 ~~~v~~G~~v~l~C~~~g~P~p~i~W~k~~~~~~~~~~~~~~~-------~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~ 795 (816)
T 3dmk_A 723 DKAFAQGSDAKVECKADGFPKPQVTWKKAVGDTPGEYKDLKKS-------DNIRVEEGTLHVDNIQKTNEGYYLCEAING 795 (816)
T ss_dssp CEEEETTCCEEEECEEEEESCCEEECCEECSSSTTCCBCCCCB-------TTEEEETTEEEECSCCGGGCEEEEEEEECS
T ss_pred cceecCCCcEEEEEEEecCCCCeEEEEecCCCCCccccccccC-------CCEEecCCEEEECcCChhhCeEEEEEEEeC
Confidence 4566789999999999999999999999765443221110000 011112357999999999999999999999
Q ss_pred CCCcccceEEEEE
Q psy12044 343 AGSTSSNYTIRIV 355 (767)
Q Consensus 343 ~G~s~~s~sL~V~ 355 (767)
.|.+.+.+.+...
T Consensus 796 ~G~~~~~v~~~~~ 808 (816)
T 3dmk_A 796 IGSGLSAVIMISV 808 (816)
T ss_dssp SSSCEEEEEEEEE
T ss_pred CCCCcEEEEEEEe
Confidence 9999887766544
No 381
>2x1w_L Vascular endothelial growth factor receptor 2; hormone-signaling protein complex, angiogenesis, glycoprotein, HOST-virus interaction, membrane; HET: NAG BMA; 2.70A {Homo sapiens} PDB: 2x1x_R*
Probab=96.48 E-value=0.0038 Score=61.62 Aligned_cols=79 Identities=19% Similarity=0.155 Sum_probs=52.0
Q ss_pred cceeeccc--ccccccccccccCCCcEEEeec---CeeccCCCcccccccceeecccCcceeeeEEEEeeeccCCCCcee
Q psy12044 262 FYLEIQEG--KNVSLLCKVSAIPEAKITWLFD---GVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFV 336 (767)
Q Consensus 262 ~~~~v~~G--~~vsL~C~a~g~P~p~itW~~~---g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~GtY~ 336 (767)
..+.+.+| +.+.|.|.+.+ |.+.++|++. +..+..... ... .....|.|.++..+|.|.|.
T Consensus 15 ~~v~v~eG~~~~v~L~C~~~~-p~~~v~w~~~~~~g~~~~~~~~-------~~~------~~~~~l~I~~v~~~D~G~Y~ 80 (213)
T 2x1w_L 15 GVVYITENKNKTVVIPCLGSI-SNLNVSLCARYPEKRFVPDGNR-------ISW------DSKKGFTIPSYMISYAGMVF 80 (213)
T ss_dssp EEEEECCSTTCEEEECCCBSS-TTCCEEEEEETTTEEECCCSSS-------CEE------ETTTEEEEEGGGTTTCSEEE
T ss_pred eEEEEecCCCccEEEeeccCC-CCcEEEEEhhcCCCccccCCCc-------ccc------cCCccEEEccCChhcCceEE
Confidence 56778899 99999999986 7799999874 444332211 111 11235899999999999999
Q ss_pred EeeccCCCCcccc-eEEEE
Q psy12044 337 CVAENQAGSTSSN-YTIRI 354 (767)
Q Consensus 337 CvA~N~~G~s~~s-~sL~V 354 (767)
|.|.|..+..... +.+.+
T Consensus 81 C~a~n~~~~~~s~~~~l~v 99 (213)
T 2x1w_L 81 CEAKINDESYQSIMYIVVV 99 (213)
T ss_dssp EEEC----CEECCCEEEEE
T ss_pred EEEEECCeeEEEEEEEEEE
Confidence 9999854443322 44544
No 382
>1zox_A CLM-1; IG-superfamily, IG-V, NKP44-like, myeloid IG-like receptor, structural genomics, PSI, protein structure initiative; 2.10A {Mus musculus}
Probab=96.48 E-value=0.0044 Score=54.69 Aligned_cols=92 Identities=12% Similarity=0.112 Sum_probs=54.2
Q ss_pred cceeecccccccccccccccCC-CcEEEeecCe-----eccC-CCcc-cccccceeecccCcceeeeEEEEeeeccCCCC
Q psy12044 262 FYLEIQEGKNVSLLCKVSAIPE-AKITWLFDGV-----PIQN-ESMS-ASESHAVYSTEEGTEIKKSELLIYNSNIDDNG 333 (767)
Q Consensus 262 ~~~~v~~G~~vsL~C~a~g~P~-p~itW~~~g~-----~l~~-~s~~-~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~G 333 (767)
..+.+.+|+.++|.|....... ..+.|.+... .+.. .... .....++.... ........|.|.++..+|.|
T Consensus 9 ~~v~~~~G~~v~L~C~~~~~~~~~~v~W~~~~~~~~~~~l~~~~~~~~~~~~~R~~~~~-~~~~~~~sL~I~~~~~~DsG 87 (113)
T 1zox_A 9 EEVSGQEQGSLTVQCRYTSGWKDYKKYWCQGVPQRSCKTLVETDASEQLVKKNRVSIRD-NQRDFIFTVTMEDLRMSDAG 87 (113)
T ss_dssp SEEEEETTSCEEEEEEECGGGTTSCEEEEESSSGGGCEEEEECCSSSCCEEETTEEEEE-ETTTTEEEEEECSCCGGGCE
T ss_pred CEEEEeCCCcEEEEeECCCCcccceEEEEeCCCCCCCeEEEEecCccccccCCCEEEEE-CCcCCEEEEEEccCCHHHCE
Confidence 3467889999999999876543 3599998431 1111 0000 00011111111 11223468999999999999
Q ss_pred ceeEeeccCCCCcccceEEEE
Q psy12044 334 TFVCVAENQAGSTSSNYTIRI 354 (767)
Q Consensus 334 tY~CvA~N~~G~s~~s~sL~V 354 (767)
.|.|.+.+........+.|.|
T Consensus 88 ~Y~C~v~~~~~~~~~~v~L~V 108 (113)
T 1zox_A 88 IYWCGITKGGLDPMFKVTVNI 108 (113)
T ss_dssp EEEEEECCSSSCCEEEEEEEE
T ss_pred EEEEeeEcCCCCccEEEEEEE
Confidence 999999887533333343333
No 383
>3mjg_X Beta-type platelet-derived growth factor receptor; protein-protein complex, growth factor-receptor complex, TRA hormone complex; HET: NDG NAG; 2.30A {Homo sapiens}
Probab=96.47 E-value=0.0038 Score=64.15 Aligned_cols=86 Identities=21% Similarity=0.266 Sum_probs=56.6
Q ss_pred CCCCccceeecccccccccccccccCCCcEEEeecCeeccCCCcccccccceeecccCcceeeeEEEEeeeccCCCCcee
Q psy12044 257 ITPSTFYLEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFV 336 (767)
Q Consensus 257 i~~~~~~~~v~~G~~vsL~C~a~g~P~p~itW~~~g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~GtY~ 336 (767)
+.+......+.+|+.+.|.|.+.+. +.|.+++..+... ..... .....+.|.|.++...|.|.|.
T Consensus 3 i~~~~~~~~v~~G~~v~L~C~~~~~----v~W~~~~~~~~~~---------~~~~~--~~~~~~~L~i~~~~~~D~G~Y~ 67 (289)
T 3mjg_X 3 VTPPGPELVLNVSSTFVLTCSGSAP----VVWERMSQEPPQE---------MAKAQ--DGTFSSVLTLTNLTGLDTGEYF 67 (289)
T ss_dssp BCSSCSEEECCTTCCEEEEEEESSC----CEEEBTTBCCSEE---------EEECT--TSCEEEEEEECSCCGGGCEEEE
T ss_pred ecCCCCeEEEeCCCcEEEEEeccce----EEEECCCCCcccc---------eeccC--CCceeEEEEEccCChhhCEEEE
Confidence 4444455678899999999998875 9999988665210 11111 1123578999999999999999
Q ss_pred EeeccCCCC-cccceEEEEEee
Q psy12044 337 CVAENQAGS-TSSNYTIRIVLK 357 (767)
Q Consensus 337 CvA~N~~G~-s~~s~sL~V~~~ 357 (767)
|.+.|..|. ......+.+.+.
T Consensus 68 C~a~n~~g~~~~~~~~~~v~v~ 89 (289)
T 3mjg_X 68 CTHNDSRGLETDERKRLYIFVP 89 (289)
T ss_dssp EECCC------CCCEEEEEECC
T ss_pred EEEcccCCCCcCcEEeEEEEEE
Confidence 999998876 333455555554
No 384
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=96.47 E-value=0.00083 Score=66.46 Aligned_cols=83 Identities=12% Similarity=0.135 Sum_probs=41.7
Q ss_pred CCccEEEccCC-CCCcc----CcccccCCCCCCEEEccCCCCCCCCCCC----CCCCCCCcEEECCCCcCcccc----cC
Q psy12044 75 VNLQKIYLSRC-RISVI----DSKAFRGLTNLVDLDFSHNVLQTVPSDT----FPDYPSLMKLTLSGNPIKQIK----TG 141 (767)
Q Consensus 75 ~~L~~L~Ls~N-~L~~i----~p~~f~~L~~L~~L~Ls~N~Lt~l~p~~----f~~l~~L~~L~Ls~N~l~~l~----~~ 141 (767)
+.|+.|+|++| .|... +..++..-..|+.|+|++|.|....... +..-..|+.|+|++|.|.... ..
T Consensus 41 ~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~ 120 (197)
T 1pgv_A 41 TDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLR 120 (197)
T ss_dssp SSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHH
T ss_pred CCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHHH
Confidence 45666777664 55532 2344555556666666666665322222 223345666666666655321 12
Q ss_pred CcCCCCCccEEeccCC
Q psy12044 142 AFQPLSYLVTLELSKC 157 (767)
Q Consensus 142 ~~~~l~~L~~L~Ls~N 157 (767)
++..-..|+.|+|++|
T Consensus 121 aL~~N~tL~~L~L~n~ 136 (197)
T 1pgv_A 121 STLVTQSIVEFKADNQ 136 (197)
T ss_dssp HTTTTCCCSEEECCCC
T ss_pred HHhhCCceeEEECCCC
Confidence 2333344556665543
No 385
>1qz1_A Neural cell adhesion molecule 1, 140 kDa isoform; IG modules, NCAM; 2.00A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ie5_A
Probab=96.46 E-value=0.0024 Score=65.58 Aligned_cols=77 Identities=29% Similarity=0.522 Sum_probs=55.7
Q ss_pred ccceeecccccccccccccccC-CCcEEEee-cCeeccCCCcccccccceeecccCcceeeeEEEEeeeccCCCCceeEe
Q psy12044 261 TFYLEIQEGKNVSLLCKVSAIP-EAKITWLF-DGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCV 338 (767)
Q Consensus 261 ~~~~~v~~G~~vsL~C~a~g~P-~p~itW~~-~g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~GtY~Cv 338 (767)
+....+..|+.+.|.|.+.+.+ .+.+.|.+ ++..+..... + +.... .....+.|.|.++...|.|.|.|.
T Consensus 9 p~~~~v~~G~~v~l~C~~~~~~~~~~i~W~~~~g~~~~~~~~-----~-~~~~~--~~~~~~~L~i~~~~~~D~G~Y~C~ 80 (291)
T 1qz1_A 9 PSQGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQ-----R-ISVVW--NDDDSSTLTIYNANIDDAGIYKCV 80 (291)
T ss_dssp SSSEEEETTCCEEEEEEESSCCSCCEEEEECTTSCBCCSSCS-----S-EEEEE--EETTEEEEEECSCCGGGCEEEEEE
T ss_pred CCCceEeCCCeEEEEEEeCCCCCCcEeEEECCCCeECccCCc-----e-EEEEE--cCCCeEEEEEecCCCCCCEEEEEE
Confidence 3455788999999999999987 68999998 6655532211 1 11111 012346899999999999999999
Q ss_pred eccCCCC
Q psy12044 339 AENQAGS 345 (767)
Q Consensus 339 A~N~~G~ 345 (767)
+.|..|.
T Consensus 81 ~~n~~g~ 87 (291)
T 1qz1_A 81 VTAEDGT 87 (291)
T ss_dssp EECTTSC
T ss_pred EEcCCCC
Confidence 9998864
No 386
>2j6e_L IGM, FAB light chain; autoimmune complex human IGM rheumatoid factor IGG1-FC, immunoglobulin C region, membrane, glycoprotein, transmembrane; HET: NAG FUL BMA MAN NDG GAL; 3.0A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2
Probab=96.44 E-value=0.0023 Score=63.68 Aligned_cols=78 Identities=13% Similarity=0.308 Sum_probs=53.8
Q ss_pred cccccccccccccccCC--CcEEEeecCeeccCCCcccccccceeecccCcceeeeEEEEeeeccCCCCceeEeeccCCC
Q psy12044 267 QEGKNVSLLCKVSAIPE--AKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCVAENQAG 344 (767)
Q Consensus 267 ~~G~~vsL~C~a~g~P~--p~itW~~~g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~GtY~CvA~N~~G 344 (767)
..|+.+.|.|.+.+.+. +.++|.+++..+...... .......++.....+.|.|..+...|.|.|+|.|.|..+
T Consensus 148 ~~g~~v~L~C~~~g~~p~~~~v~W~k~g~~l~~~~~~----~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~~ 223 (234)
T 2j6e_L 148 LQANKATLVCLISDFFPGAVTVAWKADGAPVKAGVET----TKPSKQSNNKYAASSYLSLTPEQWKSHRSYSCQVTHEGS 223 (234)
T ss_dssp HTTSCCCEEECCCBCSSCCCEEEEEETTEECCSSEEE----CCCCCCTTSCCBCCEEECCCGGGTTTSCCEEEEEEBTTB
T ss_pred hcCCceEEEEEEEEEcCCceEEEEEECCEECCCCccc----cCceECCCCCEEEEEEEEECHHHcCCCCeEEEEEEeCCC
Confidence 35789999999998643 389999998876543110 000111223334456889999999999999999999877
Q ss_pred Cccc
Q psy12044 345 STSS 348 (767)
Q Consensus 345 ~s~~ 348 (767)
...+
T Consensus 224 ~~~~ 227 (234)
T 2j6e_L 224 TVEK 227 (234)
T ss_dssp CCCE
T ss_pred ceEE
Confidence 6443
No 387
>3o4o_C Interleukin-1 receptor type 2; cytokine-receptor complex, beta-trefoil, IG-like fold, immun; HET: NAG; 3.30A {Homo sapiens}
Probab=96.44 E-value=0.0015 Score=69.14 Aligned_cols=90 Identities=18% Similarity=0.251 Sum_probs=64.6
Q ss_pred CCCccceeeccccccccccccc-------ccCCCcEEEeecCeeccCCCcccccccceeecccCcceeeeEEEEeeeccC
Q psy12044 258 TPSTFYLEIQEGKNVSLLCKVS-------AIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNID 330 (767)
Q Consensus 258 ~~~~~~~~v~~G~~vsL~C~a~-------g~P~p~itW~~~g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~s 330 (767)
...+....+.+|+.+.|.|.+. +.|.+.+.|.+++..+...... ...+ ....+.|.|.++...
T Consensus 22 ~~~~~~~~v~~G~~v~L~C~~~~~~~~~~~~p~~~v~W~k~~~~~~~~~~~---~~~~-------~~~~~~L~i~~v~~~ 91 (339)
T 3o4o_C 22 GRHYKREFRLEGEPVALRCPQVPYWLWASVSPRINLTWHKNDSARTVPGEE---ETRM-------WAQDGALWLLPALQE 91 (339)
T ss_dssp EECSCCEEEETTBCCEEECTTSCSSCCSTTSSCCBCCCEESSCCSCCSCCS---SSCE-------EEETTEEEESSBCTT
T ss_pred CcCceEEEEECCccEEEEeccccccccccCCCCceEEEEECCCCcccCccc---cccE-------EeeCCeEEECCCCcc
Confidence 3344567788999999999998 8899999999987653211100 0001 112357999999999
Q ss_pred CCCceeEeeccCCCCcccceEEEEEee
Q psy12044 331 DNGTFVCVAENQAGSTSSNYTIRIVLK 357 (767)
Q Consensus 331 D~GtY~CvA~N~~G~s~~s~sL~V~~~ 357 (767)
|.|.|.|.+.|..|.....+.+.|...
T Consensus 92 D~G~Y~C~~~n~~g~~~~~~~l~V~~~ 118 (339)
T 3o4o_C 92 DSGTYVCTTRNASYCDKMSIELRVFEN 118 (339)
T ss_dssp CCEEEECCEEETTEEEEEEEEEEEECS
T ss_pred cCEEEEEEEECCcceEEEEEEEEEEcC
Confidence 999999999998887666666666543
No 388
>1uct_A Immunoglobulin alpha FC receptor; beta stands, immune system; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1ovz_A* 1ow0_C*
Probab=96.44 E-value=0.0015 Score=65.29 Aligned_cols=71 Identities=11% Similarity=0.068 Sum_probs=50.4
Q ss_pred eeecccccccccccccccCCCcEEEeecCeeccCCCcccccccceeecccCcceeee--EEEEeeeccCCCCceeEeecc
Q psy12044 264 LEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKS--ELLIYNSNIDDNGTFVCVAEN 341 (767)
Q Consensus 264 ~~v~~G~~vsL~C~a~g~P~p~itW~~~g~~l~~~s~~~~~~~~~~~~~~g~~~~~s--~L~I~nvs~sD~GtY~CvA~N 341 (767)
..+.+|+.++|.|.+.+ +.+.+.|++++..+..... . . . ...... .|.|.++..+|.|.|.|.+.|
T Consensus 18 ~~v~~G~~vtL~C~~~~-~~~~~~W~k~g~~~~~~~~-----~-~--~---~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n 85 (218)
T 1uct_A 18 PVIPLDGSVKIQCQAIR-EAYLTQLMIIKNSTYREIG-----R-R--L---KFWNETDPEFVIDHMDANKAGRYQCQYRI 85 (218)
T ss_dssp SEEETTCCEEEEECCCT-TCSEEEEEEEETTEEEECS-----E-E--C---C----CCCEEEECSCCGGGCEEEEEEEEE
T ss_pred CccCCCCCEEEEEEcCC-CCCEEEEEECCCccccccc-----c-c--C---CCCcceeeEEEEcccccccCEEEEEEEEc
Confidence 35788999999999987 6789999998755432110 0 0 0 011123 799999999999999999999
Q ss_pred CCCCc
Q psy12044 342 QAGST 346 (767)
Q Consensus 342 ~~G~s 346 (767)
..|..
T Consensus 86 ~~~~~ 90 (218)
T 1uct_A 86 GHYRF 90 (218)
T ss_dssp TTTEE
T ss_pred CCCce
Confidence 76643
No 389
>2pet_A Lutheran blood group glycoprotein; immunoglobulin superfamily., cell adhesion; 1.70A {Homo sapiens} PDB: 2pf6_A
Probab=96.42 E-value=0.0022 Score=63.43 Aligned_cols=97 Identities=19% Similarity=0.359 Sum_probs=60.3
Q ss_pred ccceeecccccccccccccccCC-CcEEEeecCeeccCCCcc-----ccc-ccceeecccC----cceeeeEEEEeeecc
Q psy12044 261 TFYLEIQEGKNVSLLCKVSAIPE-AKITWLFDGVPIQNESMS-----ASE-SHAVYSTEEG----TEIKKSELLIYNSNI 329 (767)
Q Consensus 261 ~~~~~v~~G~~vsL~C~a~g~P~-p~itW~~~g~~l~~~s~~-----~~~-~~~~~~~~~g----~~~~~s~L~I~nvs~ 329 (767)
+....+.+|+.+.|.|.+.+.+. +.+.|.+++.......+. ... .....+.... .....+.|.|.++..
T Consensus 7 p~~~~v~~G~~v~L~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~L~i~~v~~ 86 (231)
T 2pet_A 7 PPLVEVMRGKSVILDCTPTGTHDHYMLEWFLTDRSGARPRLASAEMQGSELQVTMHDTRGRSPPYQLDSQGRLVLAEAQV 86 (231)
T ss_dssp CSEEEEETTCCEEECCCCBSCCSEEEEEEEEECTTCCCCEEEEEEEETTEEEEEECCCSCCSSCCEECTTCCEEESSCCG
T ss_pred CCcEEEEcCCCEEEecccCCCCCceEEEEEEeCCCceeEEEEeccccCCccccccccccccccccccCCCceEEEcccCc
Confidence 34567889999999999999985 899999854321100000 000 0001100000 011123499999999
Q ss_pred CCCCceeEeeccCC-CCcccceEEEEEee
Q psy12044 330 DDNGTFVCVAENQA-GSTSSNYTIRIVLK 357 (767)
Q Consensus 330 sD~GtY~CvA~N~~-G~s~~s~sL~V~~~ 357 (767)
.|.|.|.|.+.+.. +.....+.+.|...
T Consensus 87 ~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~ 115 (231)
T 2pet_A 87 GDERDYVCVVRAGAAGTAEATARLNVFAK 115 (231)
T ss_dssp GGCEEEEEEEECGGGCEEEEEEEEEEEBC
T ss_pred ccCceEEEEEEecCCCceEEEEEEEEEec
Confidence 99999999999987 66666666666543
No 390
>1ncn_A T lymphocyte activation antigen CD86; IG V, beta strands, immune system; 2.70A {Homo sapiens} SCOP: b.1.1.1 PDB: 1i85_A
Probab=96.42 E-value=0.0028 Score=55.66 Aligned_cols=83 Identities=11% Similarity=0.132 Sum_probs=52.2
Q ss_pred ceeecccccccccccccccCCC-----cEEEeecCee-c---cCCCc-----ccccccceeecccCcceeeeEEEEeeec
Q psy12044 263 YLEIQEGKNVSLLCKVSAIPEA-----KITWLFDGVP-I---QNESM-----SASESHAVYSTEEGTEIKKSELLIYNSN 328 (767)
Q Consensus 263 ~~~v~~G~~vsL~C~a~g~P~p-----~itW~~~g~~-l---~~~s~-----~~~~~~~~~~~~~g~~~~~s~L~I~nvs 328 (767)
.+.+..|+.+.|.|...+.|.+ .+.|.+++.. + ..... ......+..+. .....|.|.++.
T Consensus 3 ~v~~~~G~~v~L~C~~~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~-----~~~~sL~I~~v~ 77 (110)
T 1ncn_A 3 KIQAYFNETADLPCQFANSQNQSLSELVVFWQDQENLVLNEVYLGKEKFDSVHSKYMGRTSFD-----SDSWTLRLHNLQ 77 (110)
T ss_dssp EEEEETTSCEEEECCCCCTTCCCGGGEEEEEEETTCCEEEEEETTEECCSSBCTTTTTSEEEE-----TTTTEEEECSCC
T ss_pred EEEEEeCCCEEEEeEeCCCCcCCCccEEEEEEeCCCccEEEEECCcccccccCcccCCcEEEE-----CCCEEEEEcCCC
Confidence 3567789999999998765543 3999986431 1 01000 00000111111 113689999999
Q ss_pred cCCCCceeEeeccCCCCcccce
Q psy12044 329 IDDNGTFVCVAENQAGSTSSNY 350 (767)
Q Consensus 329 ~sD~GtY~CvA~N~~G~s~~s~ 350 (767)
.+|.|.|.|.+.+..+.....+
T Consensus 78 ~~D~G~Y~C~v~~~~~~~~~~~ 99 (110)
T 1ncn_A 78 IKDKGLYQCIIHHKKPTGMIRI 99 (110)
T ss_dssp GGGCEEEEEEEEEECSSSEEEE
T ss_pred hHHCEEEEEEEEcCCCCceEEE
Confidence 9999999999998877655443
No 391
>3sbw_C Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-H1, programmed death-1 ligand 1, complex, costimulatory, immune system; 2.28A {Homo sapiens} PDB: 3fn3_A 3bis_A 3bik_A
Probab=96.40 E-value=0.0038 Score=61.35 Aligned_cols=83 Identities=16% Similarity=0.192 Sum_probs=53.8
Q ss_pred eecccccccccccccccCCCcEEEeec-CeeccCCCcccccccceeecccCcceeeeEEEEeeeccCCCCceeEeeccCC
Q psy12044 265 EIQEGKNVSLLCKVSAIPEAKITWLFD-GVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCVAENQA 343 (767)
Q Consensus 265 ~v~~G~~vsL~C~a~g~P~p~itW~~~-g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~GtY~CvA~N~~ 343 (767)
.+..|..+.|.|.+.+.|.|.+.|.++ +..+...... .......+.....+. ..+...|.|.|+|.|.|..
T Consensus 127 ~~~~g~~v~L~C~~~g~P~p~i~W~~~~g~~~~~~~~~-----~~~~~~~~~~~~~~~---l~v~~~d~g~Y~C~a~n~~ 198 (222)
T 3sbw_C 127 VDPVTSEHELTCQAEGYPKAEVIWTSSDHQVLSGKTTT-----TNSKREEKLFNVTST---LRINTTTNEIFYCTFRRLD 198 (222)
T ss_dssp EETTTTEEEEEEEEEEBSCCEEEEEETTCCEECCEEEE-----EECC----CEEEEEE---EEEECCTTCEEEEEEEETT
T ss_pred eecCCCcEEEEEEecCCCCCeEEEEECCCceecCccce-----EEEcCCCCCEEEEEE---EEEeccCCcEEEEEEEeCc
Confidence 456789999999999999999999997 5444321110 000111121112222 2445689999999999999
Q ss_pred CCcccceEEEEE
Q psy12044 344 GSTSSNYTIRIV 355 (767)
Q Consensus 344 G~s~~s~sL~V~ 355 (767)
|.....+.+.|.
T Consensus 199 g~~~~~~~l~v~ 210 (222)
T 3sbw_C 199 PEENHTAELVIP 210 (222)
T ss_dssp TTEEEEEEEECC
T ss_pred cceeeEEEEEec
Confidence 988777666554
No 392
>3s96_B 3B5H10 FAB light chain; huntingtin, immune system; 1.90A {Mus musculus} PDB: 2qhr_L 3ffd_B 4dcq_A
Probab=96.40 E-value=0.0024 Score=62.71 Aligned_cols=79 Identities=14% Similarity=0.235 Sum_probs=52.7
Q ss_pred ceeeccccccccccccccc-CCCcEEEeecC--eec---c-CCC----ccccc-ccceeecccCcceeeeEEEEeeeccC
Q psy12044 263 YLEIQEGKNVSLLCKVSAI-PEAKITWLFDG--VPI---Q-NES----MSASE-SHAVYSTEEGTEIKKSELLIYNSNID 330 (767)
Q Consensus 263 ~~~v~~G~~vsL~C~a~g~-P~p~itW~~~g--~~l---~-~~s----~~~~~-~~~~~~~~~g~~~~~s~L~I~nvs~s 330 (767)
.+.+.+|+.+.|.|.+.+. +.+.+.|++.. ... . ... ..... ...+.... ......|.|.++..+
T Consensus 9 ~~~v~~G~~v~L~C~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~---~~~~~~L~I~~v~~~ 85 (218)
T 3s96_B 9 SASFSLGASAKLTCTLNSQHSTYTIEWYQQQPLKPPKYVMELKKDGSHSTGDGIPDRFSGSS---SGADRYLSISNIQPE 85 (218)
T ss_dssp EEEEETTSCEEEEEEECGGGTTCCEEEEEECTTSCCEEEEEECTTSCEEECSSCCTTEEEEE---ETTEEEEEESSCCGG
T ss_pred cEEECCCCcEEEEEECCCCCCCcEEEEEEECCCCCeEEEEEEcccCccccCCCcccceEEec---CCceEEEEEccCCcc
Confidence 6778899999999999999 89999998832 111 0 000 00000 00111110 223467999999999
Q ss_pred CCCceeEeeccCCC
Q psy12044 331 DNGTFVCVAENQAG 344 (767)
Q Consensus 331 D~GtY~CvA~N~~G 344 (767)
|.|.|.|.+.+..|
T Consensus 86 D~G~Y~C~~~~~~~ 99 (218)
T 3s96_B 86 DEAIYICGVGDTIK 99 (218)
T ss_dssp GCEEEEEEEEEEET
T ss_pred cCEEEEEEEecCCC
Confidence 99999999998876
No 393
>2if7_A SLAM family member 6; NTB-A, homophilic receptor, immune system; 3.00A {Homo sapiens}
Probab=96.40 E-value=0.0025 Score=62.11 Aligned_cols=89 Identities=21% Similarity=0.335 Sum_probs=60.0
Q ss_pred ccceeecccccccccccccc-cCCCcEEEeecCeeccCCCc--c--------ccc-ccceeecccCcceeeeEEEEeeec
Q psy12044 261 TFYLEIQEGKNVSLLCKVSA-IPEAKITWLFDGVPIQNESM--S--------ASE-SHAVYSTEEGTEIKKSELLIYNSN 328 (767)
Q Consensus 261 ~~~~~v~~G~~vsL~C~a~g-~P~p~itW~~~g~~l~~~s~--~--------~~~-~~~~~~~~~g~~~~~s~L~I~nvs 328 (767)
+..+.+.+|+.+.|.|.+.+ .+.+.+.|.+++..+..... . ... ..+..+. ....|.|.++.
T Consensus 5 p~~v~~~~G~~v~L~C~~~~~~~~~~v~W~~~~~~i~~~~~~~~~~~~~~~~~~~~~~R~~~~------~~~sL~I~~v~ 78 (193)
T 2if7_A 5 PLMVNGILGESVTLPLEFPAGEKVNFITWLFNETSLAFIVPHETKSPEIHVTNPKQGKRLNFT------QSYSLQLSNLK 78 (193)
T ss_dssp CEEEEEETTSCEEECCCCCCCSCCCEEEEEETTEEEEEEECCSSSCCEEEECCHHHHTTEEEC------TTCCEEECSCC
T ss_pred CeEEEEEecCeEEEeccCCCcccccEEEEEECCEEEEEEecccCCCCceeecCccccccEEEC------CCeEEEECCCC
Confidence 44567889999999999875 45579999998654321100 0 000 0011111 24679999999
Q ss_pred cCCCCceeEeeccCCCCcccceEEEEE
Q psy12044 329 IDDNGTFVCVAENQAGSTSSNYTIRIV 355 (767)
Q Consensus 329 ~sD~GtY~CvA~N~~G~s~~s~sL~V~ 355 (767)
.+|.|.|.|.+.+..|.....+.+.|.
T Consensus 79 ~~D~G~Y~C~~~~~~~~~~~~~~L~V~ 105 (193)
T 2if7_A 79 MEDTGSYRAQISTKTSAKLSSYTLRIL 105 (193)
T ss_dssp GGGCEEEEEEEECSSCEEEEEEEEEEE
T ss_pred cccCceEEEEEEecCCCeEEEEEEEEE
Confidence 999999999999988876555566554
No 394
>3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus norvegicus}
Probab=96.39 E-value=0.0025 Score=68.91 Aligned_cols=82 Identities=32% Similarity=0.447 Sum_probs=63.5
Q ss_pred ceeecccccccccccccccCCCcEEEeecCeeccCCCcccccccceeecccCcceeeeEEEEeeeccCCCCceeEeeccC
Q psy12044 263 YLEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCVAENQ 342 (767)
Q Consensus 263 ~~~v~~G~~vsL~C~a~g~P~p~itW~~~g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~GtY~CvA~N~ 342 (767)
...+..|+.+.|.|.+.+.|.+.+.|.+++..+...... ... ...+.|.|.++...|.|.|.|.+.|.
T Consensus 230 ~~~~~~g~~~~l~C~~~~~p~~~~~W~~~~~~~~~~~~~------~~~------~~~~~L~i~~~~~~d~G~Y~C~a~n~ 297 (403)
T 3laf_A 230 NVIAIEGKDAVLECCVSGYPPPSFTWLRGEEVIQLRSKK------YSL------LGGSNLLISNVTDDDSGTYTCVVTYK 297 (403)
T ss_dssp CEEEETTSCEEECCEEEEESCCEEEEEETTEECCCSSSS------EEE------ETTTEEEECSCCGGGCEEEEEEEEET
T ss_pred ceEecCCCcEEEEEEcCCCCCCeEEEEECCeeccCCCce------EEE------CCccEEEEeCCCHHHCEEEEEEEEcC
Confidence 456678999999999999999999999988766432211 111 11246999999999999999999999
Q ss_pred CCCcccceEEEEEe
Q psy12044 343 AGSTSSNYTIRIVL 356 (767)
Q Consensus 343 ~G~s~~s~sL~V~~ 356 (767)
.|.....+.+.|..
T Consensus 298 ~g~~~~~~~l~V~~ 311 (403)
T 3laf_A 298 NENISASAELTVLV 311 (403)
T ss_dssp TEEEEEEEEEEEEE
T ss_pred CCceEEEEEEEEEC
Confidence 98877777777655
No 395
>2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor tyrosine kinase, growth factor cytoki dimerization, transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A*
Probab=96.37 E-value=0.0033 Score=70.99 Aligned_cols=97 Identities=20% Similarity=0.391 Sum_probs=68.4
Q ss_pred CCCCCCccceeecccccccccccccccCCCc-EEEeecCeeccCCCcccccccceeecccCcceeeeEEEEeeeccCCCC
Q psy12044 255 PQITPSTFYLEIQEGKNVSLLCKVSAIPEAK-ITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNG 333 (767)
Q Consensus 255 P~i~~~~~~~~v~~G~~vsL~C~a~g~P~p~-itW~~~g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~G 333 (767)
|.+........+..|+.+.|.|.+.+.|.+. +.|.+++..+.... .....+.........+.|.|.++...|.|
T Consensus 212 p~i~~~~~~~~v~~G~~v~L~C~~~g~p~p~~i~W~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~L~I~~~~~~D~G 286 (524)
T 2ec8_A 212 PVVSVSKASYLLREGEEFTVTCTIKDVSSSVYSTWKRENSQTKLQE-----KYNSWHHGDFNYERQATLTISSARVNDSG 286 (524)
T ss_dssp CEEECSCSEEEEETTSCEEEEEEEEESSTTCEEEEEETTCSCCCCE-----EEEEEECSSSCEEEEEEEEESSCCTTTCE
T ss_pred CcEEecCCcceEEcCCcEEEEEEEecCCCcEEEEEEeCCCCCcccc-----ccccccccCCccceEEEEEECCCCHHHCE
Confidence 3343444455788999999999999999887 99999876531000 00011111112345678999999999999
Q ss_pred ceeEeeccCCCCcccceEEEEEe
Q psy12044 334 TFVCVAENQAGSTSSNYTIRIVL 356 (767)
Q Consensus 334 tY~CvA~N~~G~s~~s~sL~V~~ 356 (767)
.|.|.+.|..|.....+.+.|..
T Consensus 287 ~Y~C~a~n~~g~~~~~~~l~V~~ 309 (524)
T 2ec8_A 287 VFMCYANNTFGSANVTTTLEVVD 309 (524)
T ss_dssp EEEEEEECSSCEEEEEEEEEEES
T ss_pred EEEEEEEecCCceEEEEEEEEec
Confidence 99999999999887777666653
No 396
>2d3v_A Leukocyte immunoglobulin-like receptor subfamily A member 5 isoform 1; immunoglobulin-like fold, immune system; 1.85A {Homo sapiens}
Probab=96.37 E-value=0.0016 Score=63.27 Aligned_cols=72 Identities=11% Similarity=0.049 Sum_probs=44.0
Q ss_pred eeecccccccccccccccCCCcEEEeecCeeccCCCcccccccceeecccCcceeeeEEEEeeeccCCCCceeEeeccCC
Q psy12044 264 LEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCVAENQA 343 (767)
Q Consensus 264 ~~v~~G~~vsL~C~a~g~P~p~itW~~~g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~GtY~CvA~N~~ 343 (767)
..+.+|+.++|.|.+.+.| +.+.|.+++..+...... .... ........|.|.++..+|.|.|.|.|.|..
T Consensus 109 ~~v~~G~~v~L~C~~~~~p-~~~~W~k~g~~~~~~~~~------~~~~--~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~ 179 (196)
T 2d3v_A 109 PVVTSGENVTLQCGSRLRF-DRFILTEEGDHKLSWTLD------SQLT--PSGQFQALFPVGPVTPSHRWMLRCYGSRRH 179 (196)
T ss_dssp --------CEEEEEESSCC-SEEEEEEC---CCEEEEE------CEEC--TTSCEEEEEECCCCBTTBCEEEEEEEEETT
T ss_pred ccccCCCcEEEEEEcCCCC-CEEEEEccCCcccccccc------cccc--cCCCceeEEEeeecCcccCeeEEEEEEccC
Confidence 3567899999999999998 899999988655321110 0000 011234689999999999999999999865
Q ss_pred C
Q psy12044 344 G 344 (767)
Q Consensus 344 G 344 (767)
+
T Consensus 180 ~ 180 (196)
T 2d3v_A 180 I 180 (196)
T ss_dssp E
T ss_pred C
Confidence 4
No 397
>2nru_A Interleukin-1 receptor-associated kinase 4; inhibitor, IRAK, transferase; HET: TPO SEP T12; 2.00A {Homo sapiens} PDB: 2nry_A* 2oib_A* 2oic_A* 2oid_A* 2o8y_A*
Probab=96.37 E-value=0.0018 Score=67.70 Aligned_cols=44 Identities=9% Similarity=0.106 Sum_probs=39.8
Q ss_pred CCcccHHHHHhcccCCCCCCC------CccccCCCCcceEEeeCCceEEEec
Q psy12044 428 SPKYTSVNATSATCMDKVNGG------YIIADGHNDMMLYATDSGILVATNN 473 (767)
Q Consensus 428 ~~~fs~~El~~AT~~nnFs~~------nlIG~GgfG~VYKG~~dG~~VA~~~ 473 (767)
.+.|++.++.++| ++|+.. +.||+|+||.||+|..+|..||++.
T Consensus 12 ~~~~~~~~l~~~~--~~f~~~~~~~~~~~lg~G~~g~Vy~~~~~~~~vavK~ 61 (307)
T 2nru_A 12 FHSFSFYELKNVT--NNFDERPISVGGNKMGEGGFGVVYKGYVNNTTVAVKK 61 (307)
T ss_dssp CEECCHHHHHHHT--TTTCCSBTTTTCCEEEECSSEEEEEEESSSCEEEEEE
T ss_pred CCcccHHHHHHHH--cccccccccccCCccccCCCeEEEEEEECCceEEEEE
Confidence 4568999999999 999988 8999999999999997788899876
No 398
>2q20_A VK1 O18/O8 germline light chain variable domain; Al, light chain amyloidosis, amyloid, immunoglobulin, protein fibril; 1.30A {Homo sapiens} PDB: 2kqm_A 3cdf_A 3cdc_A 2kqn_A 3cdy_A 2q1e_A 3dvi_A 1igm_L 1bww_A 1b0w_A 1bre_A 1qp1_A 3dvf_A 1rei_A 1wtl_A 1ar2_A 1fgv_L 2bx5_A 2uzi_L* 1bvk_A ...
Probab=96.36 E-value=0.0027 Score=55.87 Aligned_cols=79 Identities=14% Similarity=0.184 Sum_probs=51.7
Q ss_pred ccceeecccccccccccccccCCCcEEEeecC--e---ecc-CCCccccc-ccceeecccCcceeeeEEEEeeeccCCCC
Q psy12044 261 TFYLEIQEGKNVSLLCKVSAIPEAKITWLFDG--V---PIQ-NESMSASE-SHAVYSTEEGTEIKKSELLIYNSNIDDNG 333 (767)
Q Consensus 261 ~~~~~v~~G~~vsL~C~a~g~P~p~itW~~~g--~---~l~-~~s~~~~~-~~~~~~~~~g~~~~~s~L~I~nvs~sD~G 333 (767)
+..+.+.+|+.++|.|.+.+.+.+.+.|.+.. . .+. ........ ..++... .......|.|.++..+|.|
T Consensus 10 p~~~~v~~G~~v~L~C~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~R~~~~---~~~~~~~L~I~~v~~~DsG 86 (109)
T 2q20_A 10 PSSLSASVGDRVTITCQASQDISNYLNWYQQKPGKAPKLLIYDASNLETGVPSRFSGS---GSGTDFTFTISSLQPEDIA 86 (109)
T ss_dssp CSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCEEEEEETTTEECTTCCTTEEEE---EETTEEEEEESSCCGGGCE
T ss_pred CCEEEecCCCcEEEEEeeccCCCCcEEEEEECCCCCCEEEEEEcCccCCCCCCcEEEe---ccCCEEEEEECCCChhhCE
Confidence 34567889999999999988888899999843 1 111 10000000 1111111 0123457999999999999
Q ss_pred ceeEeeccC
Q psy12044 334 TFVCVAENQ 342 (767)
Q Consensus 334 tY~CvA~N~ 342 (767)
.|.|.+.+.
T Consensus 87 ~Y~C~~~~~ 95 (109)
T 2q20_A 87 TYYCQQYDN 95 (109)
T ss_dssp EEEEEECSS
T ss_pred EEEEEEeeC
Confidence 999999874
No 399
>3p2t_A Leukocyte immunoglobulin-like receptor subfamily 4; LILR, IG, inhibitory receptor, disulfide, immune system; 1.70A {Homo sapiens}
Probab=96.35 E-value=0.002 Score=62.64 Aligned_cols=70 Identities=17% Similarity=0.297 Sum_probs=50.6
Q ss_pred eecccccccccccccccCCCcEEEeecCeeccCCCcccccccceeecccCcceeeeEEEEeeeccCCCCceeEeeccCCC
Q psy12044 265 EIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCVAENQAG 344 (767)
Q Consensus 265 ~v~~G~~vsL~C~a~g~P~p~itW~~~g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~GtY~CvA~N~~G 344 (767)
.+..|+.++|.|.+.+ +.+.+.|++++..+...... .. .........|.|.++..+|.|.|.|.|.|..+
T Consensus 110 ~v~~G~~v~L~C~~~~-~~~~~~w~k~g~~~~~~~~~------~~---~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~~ 179 (196)
T 3p2t_A 110 LVTSGKSVTLLCQSRS-PMDTFLLCKERAAHPLLCLR------SE---HGAQQHQAEFPMSPVTSVHGGTYRCFSSHGFS 179 (196)
T ss_dssp EECTTCCEEEEEEEEE-EEEEEEEEETTCCCGGGSEE------EE---EEEEEEEEEEEECSCCGGGCEEEEEEEECGGG
T ss_pred eecCCCeEEEEEecCC-CCCEEEEEeCCCcccceeec------cc---ccccCcceEEEeCCCcccCCCeEEEEEEcCCC
Confidence 5678999999999887 45689999987654321110 00 00112356799999999999999999999876
No 400
>1uct_A Immunoglobulin alpha FC receptor; beta stands, immune system; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1ovz_A* 1ow0_C*
Probab=96.35 E-value=0.003 Score=63.06 Aligned_cols=66 Identities=17% Similarity=0.296 Sum_probs=50.5
Q ss_pred eeecccccccccccccccCCCcEEEeecCeeccCCCcccccccceeecccCcceeeeEEEEeeeccCCCCceeEeeccCC
Q psy12044 264 LEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCVAENQA 343 (767)
Q Consensus 264 ~~v~~G~~vsL~C~a~g~P~p~itW~~~g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~GtY~CvA~N~~ 343 (767)
..+.+|+.++|.|.+.+.+.+.+.|.+++..+.... . .......|.|.++..+|.|.|.|.|.|..
T Consensus 115 ~~v~~G~~v~L~C~~~~~~~~~~~W~k~g~~~~~~~---------~-----~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~ 180 (218)
T 1uct_A 115 LVLMPGENISLTCSSAHIPFDRFSLAKEGELSLPQH---------Q-----SGEHPANFSLGPVDLNVSGIYRCYGWYNR 180 (218)
T ss_dssp SEECTTCCCEEEEECSSSCCSEEEEEETTCSSCCSE---------E-----ECSSSEEEECCSCCGGGCEEEEEEEECTT
T ss_pred CccCCCCCEEEEEeCCCCCCCEEEEEECCCcccccc---------c-----CCCccCEEEEccCCcccCEEEEEEEEcCC
Confidence 356789999999977777888999999886553210 0 01124679999999999999999998764
No 401
>2d9c_A Signal-regulatory protein beta-1; beta-sandwich, SIRP-beta-1, CD172B antigen, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.34 E-value=0.0095 Score=54.51 Aligned_cols=83 Identities=20% Similarity=0.331 Sum_probs=52.1
Q ss_pred Cccceeeccccccccccccccc-CCCcEEEeecCe----eccCCCcccccccceeeccc--CcceeeeEEEEeeeccCCC
Q psy12044 260 STFYLEIQEGKNVSLLCKVSAI-PEAKITWLFDGV----PIQNESMSASESHAVYSTEE--GTEIKKSELLIYNSNIDDN 332 (767)
Q Consensus 260 ~~~~~~v~~G~~vsL~C~a~g~-P~p~itW~~~g~----~l~~~s~~~~~~~~~~~~~~--g~~~~~s~L~I~nvs~sD~ 332 (767)
.+..+.+.+|+.++|.|.+.+. +.+.+.|+++.. .+..... .....+..... ........|.|.++..+|.
T Consensus 14 ~p~~~~v~~G~~v~L~C~~~~~~~~~~v~W~r~~~~~~~~i~~~~~--~~~~r~~~~~~~~~~~~~~~~L~I~~v~~~Ds 91 (136)
T 2d9c_A 14 PEKSVSVAAGESATLRCAMTSLIPVGPIMWFRGAGAGRELIYNQKE--GHFPRVTTVSELTKRNNLDFSISISNITPADA 91 (136)
T ss_dssp CCSEEEEETTSCEEECCEESCCCSCCCCEEEETTTSSCEEEEESSS--CCCSSBCCSSCSSSSSCCBCCEEESSCCTTTC
T ss_pred cCcEEEEcCCCCEEEEEEEcCCCCCceEEEEeecCCCeEEEEEcCC--CcccceeeeeeeccCCCCEEEEEECCCCHHHC
Confidence 3446788899999999998775 567899998642 1111000 00001111100 0112256899999999999
Q ss_pred CceeEeeccCCC
Q psy12044 333 GTFVCVAENQAG 344 (767)
Q Consensus 333 GtY~CvA~N~~G 344 (767)
|.|.|.+.+..+
T Consensus 92 G~Y~C~~~~~~~ 103 (136)
T 2d9c_A 92 GTYYCVKFRKGS 103 (136)
T ss_dssp EEEEEEEEECCS
T ss_pred EEEEEEEEeCCC
Confidence 999999987543
No 402
>3pv7_A B7-H6, IG-like domain-containing protein DKFZP686O24166/DKFZP686I21167; NK cell receptor, receptor-ligand complex, immune system; HET: NAG; 2.00A {Homo sapiens} PDB: 3pv6_A*
Probab=96.33 E-value=0.0019 Score=65.06 Aligned_cols=94 Identities=13% Similarity=0.244 Sum_probs=59.1
Q ss_pred ceeecccccccccccccccCCCc-----EEEeecCeeccCCC-cc-ccccc------ceeecccCcceeeeEEEEeeecc
Q psy12044 263 YLEIQEGKNVSLLCKVSAIPEAK-----ITWLFDGVPIQNES-MS-ASESH------AVYSTEEGTEIKKSELLIYNSNI 329 (767)
Q Consensus 263 ~~~v~~G~~vsL~C~a~g~P~p~-----itW~~~g~~l~~~s-~~-~~~~~------~~~~~~~g~~~~~s~L~I~nvs~ 329 (767)
...+..|+.+.|.|.+.+.|.+. +.|.++........ .. ..... ...+...........|.|.++..
T Consensus 12 ~~~v~~G~~v~L~C~~~g~p~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sL~I~~v~~ 91 (248)
T 3pv7_A 12 TQITPLNDNVTIFCNIFYSQPLNITSMGITWFWKSLTFDKEVKVFEFFGDHQEAFRPGAIVSPWRLKSGDASLRLPGIQL 91 (248)
T ss_dssp EEEEETTSCEEECCEEEESSCCCTTSCEEEEEEECSSCCCEEEEEEEESSCEEESSTTCBCCHHHHTTTBCCEEESSCCG
T ss_pred CeEEeCCCCEEEeeEEecCCCcCCCceEEEEEEEcCCCCcceEEEEecCCcccccCCceEEEeccCCCCcEEEEeCCCCH
Confidence 45678999999999998888776 99998532211000 00 00000 00000011122345699999999
Q ss_pred CCCCceeEeeccCCCCcccceEEEEEe
Q psy12044 330 DDNGTFVCVAENQAGSTSSNYTIRIVL 356 (767)
Q Consensus 330 sD~GtY~CvA~N~~G~s~~s~sL~V~~ 356 (767)
.|.|.|.|.+.+..+.....+.+.|..
T Consensus 92 ~D~G~Y~C~~~~~~~~~~~~~~L~V~~ 118 (248)
T 3pv7_A 92 EEAGEYRCEVVVTPLKAQGTVQLEVVA 118 (248)
T ss_dssp GGCEEEEEEEEETTEEEEEEEEEEEEB
T ss_pred HHCeEEEEEEEeCCccceeEEEEEEec
Confidence 999999999999877666666666554
No 403
>2wim_A N-CAM 2, NCAM2, neural cell adhesion molecule 2; cell membrane, transmembrane, immunoglobulin; HET: NDG NAG; 3.00A {Homo sapiens}
Probab=96.33 E-value=0.004 Score=63.94 Aligned_cols=85 Identities=21% Similarity=0.415 Sum_probs=57.2
Q ss_pred ccceeecccccccccccccccCCCcEEEeecCeeccCCCcccccccceeecccCcceeeeEEEEeeeccCCCCceeEeec
Q psy12044 261 TFYLEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCVAE 340 (767)
Q Consensus 261 ~~~~~v~~G~~vsL~C~a~g~P~p~itW~~~g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~GtY~CvA~ 340 (767)
.....+..|..+.|.|.+.+.|.+.+.|.+++..+..... ..+... ....|.|.++...|.|.|.|.+.
T Consensus 105 ~~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~-----~~~~~~------~~~~L~i~~v~~~d~G~Y~C~~~ 173 (291)
T 2wim_A 105 VSPQEFKQGEDAEVVCRVSSSPAPAVSWLYHNEEVTTISD-----NRFAML------ANNNLQILNINKSDEGIYRCEGR 173 (291)
T ss_dssp CCSEEEETTSCEEECCCCBCSSCCEEEEECC----CBCCC-----SSEEEC------TTSCEEETTCCGGGCEEEEEEEE
T ss_pred CCChhhcCCCCEEEEEEEccCCCCEEEEEECCccccccCC-----ceEEEc------cCCCEEEEecchhhCEEEEEEEE
Confidence 3345678999999999999999999999998765542111 001111 12469999999999999999999
Q ss_pred cCCCCcccceEEEEEe
Q psy12044 341 NQAGSTSSNYTIRIVL 356 (767)
Q Consensus 341 N~~G~s~~s~sL~V~~ 356 (767)
|..+.......+.+.+
T Consensus 174 n~~~~~~~~~~~~~~v 189 (291)
T 2wim_A 174 VEARGEIDFRDIIVIV 189 (291)
T ss_dssp ETTTTEEEEEEEEEEE
T ss_pred ECCCCeeEEeeEEEEe
Confidence 9876544433344443
No 404
>3r06_A Anti-mouse CD3epsilon antibody 2C11 FAB light CHA; anti-CD3epsilon, T-cell receptor, signalling, IMMU; 2.50A {Cricetulus migratorius} PDB: 3r08_L 3ld8_B 3ldb_B*
Probab=96.33 E-value=0.0045 Score=60.55 Aligned_cols=91 Identities=14% Similarity=0.158 Sum_probs=56.9
Q ss_pred ccceeecccccccccccccccCCCcEEEeecC--eec---cC-CCc-ccccccceeecccCcceeeeEEEEeeeccCCCC
Q psy12044 261 TFYLEIQEGKNVSLLCKVSAIPEAKITWLFDG--VPI---QN-ESM-SASESHAVYSTEEGTEIKKSELLIYNSNIDDNG 333 (767)
Q Consensus 261 ~~~~~v~~G~~vsL~C~a~g~P~p~itW~~~g--~~l---~~-~s~-~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~G 333 (767)
+....+.+|+.+.|.|.+.+.+.+.+.|++.. ... .. ... .......+... .......|.|.++..+|.|
T Consensus 8 p~~~~v~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~---~~~~~~~L~I~~v~~~D~G 84 (213)
T 3r06_A 8 PSSLPASLGDRVTINCQASQDISNYLNWYQQKPGKAPKLLIYYTNKLADGVPSRFSGS---GSGRDSSFTISSLESEDIG 84 (213)
T ss_dssp CSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEE---EETTEEEEEESSCCGGGCS
T ss_pred CCEEEecCCCcEEEEEEeCCCcCceEEEEEECCCCCcEEEEEEcCcCCCCCCCcEEEe---ccCCEEEEEECCCCcccCE
Confidence 34567889999999999999999999998732 111 00 000 00000111111 1123458999999999999
Q ss_pred ceeEeeccCCCCcc-cceEEEE
Q psy12044 334 TFVCVAENQAGSTS-SNYTIRI 354 (767)
Q Consensus 334 tY~CvA~N~~G~s~-~s~sL~V 354 (767)
.|.|.+.+..+... ....+.|
T Consensus 85 ~Y~C~~~~~~~~~~~~~~~l~V 106 (213)
T 3r06_A 85 SYYCQQYYNYPWTFGPGTKLEI 106 (213)
T ss_dssp EEEEEECSSSSCEECCCEEEEE
T ss_pred EEEEecccCCceEEcCCceEEE
Confidence 99999998764322 2344444
No 405
>4dep_C Interleukin-1 receptor accessory protein; B-trefoil, immunoglobulin, immune system, extracellular; HET: NAG; 3.10A {Homo sapiens} PDB: 3o4o_B*
Probab=96.33 E-value=0.0023 Score=67.98 Aligned_cols=92 Identities=14% Similarity=0.246 Sum_probs=62.5
Q ss_pred ccceeecccccccccccccccCC-----------CcEEEeecCeeccCCCcccccccceeecccCcceeeeEEEEeeecc
Q psy12044 261 TFYLEIQEGKNVSLLCKVSAIPE-----------AKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNI 329 (767)
Q Consensus 261 ~~~~~v~~G~~vsL~C~a~g~P~-----------p~itW~~~g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~ 329 (767)
...+.+.+|+.+.|.|.+.+.|. +.+.|++++............ ............|.|.++..
T Consensus 14 ~~~v~v~~G~~v~L~C~~~~~p~~~~ys~~~~~~~~i~W~k~~~~~~~~~~~~~~-----~~~~~~~~~~~~L~i~~~~~ 88 (349)
T 4dep_C 14 MRQIQVFEDEPARIKCPLFEHFLKFNYSTAHSAGLTLIWYWTRQDRDLEEPINFR-----LPENRISKEKDVLWFRPTLL 88 (349)
T ss_dssp CCCCEEETTSCEEEECTCCCCCSSSCHHHHHHTTCEEEEEEEESSCCCEEECCCC-----CGGGCEEEETTEEEESSCCG
T ss_pred eeeEEEecCCeEEEEccccccccccccccccCCCceEEEEECCCCCccccccccc-----ccCceEeecCCEEEEccCCh
Confidence 34567889999999999997664 999999976321100000000 00011112245799999999
Q ss_pred CCCCceeEeeccCCCCcccceEEEEEee
Q psy12044 330 DDNGTFVCVAENQAGSTSSNYTIRIVLK 357 (767)
Q Consensus 330 sD~GtY~CvA~N~~G~s~~s~sL~V~~~ 357 (767)
.|.|.|.|.+.|..|.....+.+.|...
T Consensus 89 ~D~G~Y~C~a~n~~~~~~~~~~l~V~~~ 116 (349)
T 4dep_C 89 NDTGNYTCMLRNTTYCSKVAFPLEVVQK 116 (349)
T ss_dssp GGCEEEEEEEECSSCEEEEEEEEEEECC
T ss_pred hhCEEEEEEEecCCceEEEEEEEEEecC
Confidence 9999999999999888777777776653
No 406
>3mj8_L Stimulatory hamster antibody HL4E10 FAB light CHA; hamster IGG, immune system; 2.94A {Cricetulus migratorius} PDB: 3mj9_L*
Probab=96.33 E-value=0.001 Score=65.22 Aligned_cols=78 Identities=17% Similarity=0.358 Sum_probs=55.0
Q ss_pred ecccccccccccccccC-C-CcEEEeecCeeccCCCcccccccceeecccCcceeeeEEEEeeeccCCCCceeEeeccCC
Q psy12044 266 IQEGKNVSLLCKVSAIP-E-AKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCVAENQA 343 (767)
Q Consensus 266 v~~G~~vsL~C~a~g~P-~-p~itW~~~g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~GtY~CvA~N~~ 343 (767)
+..|..+.|.|.+.+.+ . +.+.|.+++..+...... .. ... ..+.....+.|.|..+..+|.|.|+|.|.|..
T Consensus 126 ~~~g~~v~l~C~~~g~~p~~~~v~W~k~g~~l~~~~~~---~~-~~~-~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~ 200 (213)
T 3mj8_L 126 ELKTNQATLVCMINGFYPADVAVTWEADGTPITQGVKT---TQ-PSK-SDSKYMATSYLTMTADAWKSRNTFICKVTHGG 200 (213)
T ss_dssp HHTTTEEEEEEEEEEEBSSCCEEEEEETTEEECTTEEE---CC-CEE-ETTEEEEEEEEEEESHHHHSCSCEEEEEEETT
T ss_pred cccCCcEEEEEEeeceeCCCeEEEEEcCCcccCCCccc---CC-cCc-cCCcEEEEEEEEEeHHHcCCCCEEEEEEEECC
Confidence 34789999999999863 3 499999998877542111 00 011 23334455779999999999999999999987
Q ss_pred CCccc
Q psy12044 344 GSTSS 348 (767)
Q Consensus 344 G~s~~ 348 (767)
+....
T Consensus 201 ~~~~~ 205 (213)
T 3mj8_L 201 NTVEK 205 (213)
T ss_dssp EEEEE
T ss_pred ccEEe
Confidence 65443
No 407
>1wio_A CD4, T-cell surface glycoprotein CD4; immunoglobulin fold, transmembrane, MHC lipoprotein, polymorphism; 3.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1 b.1.1.3 b.1.1.3 PDB: 1wip_A 1wiq_A 3t0e_E
Probab=96.32 E-value=0.0027 Score=68.07 Aligned_cols=94 Identities=9% Similarity=0.073 Sum_probs=62.0
Q ss_pred cceeecccccccccccccc-----cCCCcEEEeecCeeccCCCcccc-cccceeeccc--C-----cceeeeEEEEeeec
Q psy12044 262 FYLEIQEGKNVSLLCKVSA-----IPEAKITWLFDGVPIQNESMSAS-ESHAVYSTEE--G-----TEIKKSELLIYNSN 328 (767)
Q Consensus 262 ~~~~v~~G~~vsL~C~a~g-----~P~p~itW~~~g~~l~~~s~~~~-~~~~~~~~~~--g-----~~~~~s~L~I~nvs 328 (767)
....+.+|..+.|.|.+.+ .|.+.+.|.+++..+........ ....+..... . .......|.|.++.
T Consensus 184 ~~~~~~~G~~v~l~C~~~~~~~~~~P~p~i~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~ 263 (363)
T 1wio_A 184 SIVYKKEGEQVEFSFPLAFTVEKLTGSGELWWQAERASSSKSWITFDLKNKEVSVKRVTQDPKLQMGKKLPLHLTLPQAL 263 (363)
T ss_dssp EEEEEETBCCEEEECCCCCCCCSSCEEEEEEEEESSCCCCCCEEEEEECSSCEEEEEEECSSCCBCCSSSSCEEEESSBC
T ss_pred CceEEecCCEEEEEEEEecccccCCCceeEEEecCCCCccceEEEEEecCCeeeccccccchhhhcccCCceEEEEccCC
Confidence 3456778999999998877 78899999998766543111000 0000111000 0 01113489999999
Q ss_pred cCCCCceeEeeccC--CCCcccceEEEEE
Q psy12044 329 IDDNGTFVCVAENQ--AGSTSSNYTIRIV 355 (767)
Q Consensus 329 ~sD~GtY~CvA~N~--~G~s~~s~sL~V~ 355 (767)
..|.|.|.|.|.|. .|.....+.+.|.
T Consensus 264 ~~d~G~Y~C~a~n~~~~g~~~~~~~l~V~ 292 (363)
T 1wio_A 264 PQYAGSGNLTLALEAKTGKLHQEVNLVVM 292 (363)
T ss_dssp GGGCEEEEEEECBTTTTCCEEEEEEEEEE
T ss_pred cCcCcEEEEEEEEhhhcCeEEEEEeEEEE
Confidence 99999999999999 8877666666554
No 408
>1neu_A Myelin P0 protein; structural protein, glycoprotein, transmembrane, phosphorylation, immunoglobulin fold, signal; 1.90A {Rattus norvegicus} SCOP: b.1.1.1
Probab=96.30 E-value=0.0044 Score=55.26 Aligned_cols=92 Identities=21% Similarity=0.302 Sum_probs=52.2
Q ss_pred ceeeccccccccccccccc----CCCcEEEeecCee------ccCC---Ccc----cccccceeecccCcceeeeEEEEe
Q psy12044 263 YLEIQEGKNVSLLCKVSAI----PEAKITWLFDGVP------IQNE---SMS----ASESHAVYSTEEGTEIKKSELLIY 325 (767)
Q Consensus 263 ~~~v~~G~~vsL~C~a~g~----P~p~itW~~~g~~------l~~~---s~~----~~~~~~~~~~~~g~~~~~s~L~I~ 325 (767)
.+.+..|+.+.|.|..... ..+.+.|.+.... +... ... .....++.+... .......|.|.
T Consensus 8 ~v~~~~G~~v~L~C~~~~~~~~~~~~~v~W~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~R~~~~~~-~~~~~~sL~I~ 86 (124)
T 1neu_A 8 EVYGAVGSQVTLHCSFWSSEWVSDDISFTWRYQPEGGRDAISIFHYAKGQPYIDEVGTFKERIQWVGD-PSWKDGSIVIH 86 (124)
T ss_dssp EEEEETTSCEEECCEEECSSCCCSCCEEEEEEEETTCCCCEEEEEEETTEEEECSSSTTTTCEEECCB-GGGTBCCEEEC
T ss_pred eEEEEeCCeEEEEeEEeCCCCCCCceEEEEEEcCCCCCceEEEEEecCCeeccccCccccCcEEEecC-CcCCeEEEEEc
Confidence 4677899999999997543 4678999984320 1000 000 000111111111 12234689999
Q ss_pred eeccCCCCceeEeeccCCCCc--ccceEEEEE
Q psy12044 326 NSNIDDNGTFVCVAENQAGST--SSNYTIRIV 355 (767)
Q Consensus 326 nvs~sD~GtY~CvA~N~~G~s--~~s~sL~V~ 355 (767)
++..+|.|.|.|.+.+..+.. ...+.|.|.
T Consensus 87 ~v~~~D~G~Y~C~v~~~~~~~~~~~~v~L~V~ 118 (124)
T 1neu_A 87 NLDYSDNGTFTCDVKNPPDIVGKTSQVTLYVF 118 (124)
T ss_dssp SCCGGGCEEEEEEEEC----CCEEEEEEEEEE
T ss_pred cCChhhCEEEEEEEEcCCCCcCcEeeEEEEEe
Confidence 999999999999999877653 333444443
No 409
>1i3g_L Antibody FV fragment; antibiotic; 2.44A {Mus musculus} SCOP: b.1.1.1 PDB: 3iy6_A
Probab=96.29 E-value=0.0042 Score=54.92 Aligned_cols=80 Identities=18% Similarity=0.249 Sum_probs=51.8
Q ss_pred CccceeecccccccccccccccCCCcEEEeecC--e---eccC-CCccccc-ccceeecccCcceeeeEEEEeeeccCCC
Q psy12044 260 STFYLEIQEGKNVSLLCKVSAIPEAKITWLFDG--V---PIQN-ESMSASE-SHAVYSTEEGTEIKKSELLIYNSNIDDN 332 (767)
Q Consensus 260 ~~~~~~v~~G~~vsL~C~a~g~P~p~itW~~~g--~---~l~~-~s~~~~~-~~~~~~~~~g~~~~~s~L~I~nvs~sD~ 332 (767)
.+..+.+.+|+.++|.|.+.+.+.+.+.|++.. . .+.. ....... ..++.... ......|.|.++..+|.
T Consensus 10 ~p~~~~~~~G~~v~L~C~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~R~~~~~---~~~~~~L~I~~v~~~Ds 86 (111)
T 1i3g_L 10 SHKFMSTSVGDRVSITCKASQDVGTAVAWYQQKPGQSPKLLIYWASTRHTGVPDRFTGSG---SGTDFTLTISNVQSEDL 86 (111)
T ss_dssp SCSEEECCTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEE---ETTEEEEEESSCCGGGC
T ss_pred eCCEEEEcCCCCEEEEEEeCCCCCCCEEEEEECCCCCCEEEEEECCccCCCCCCcEEEEc---CCCEEEEEECCCCHHHC
Confidence 344577889999999999988878889998843 1 1111 0000000 11111110 12345799999999999
Q ss_pred CceeEeeccC
Q psy12044 333 GTFVCVAENQ 342 (767)
Q Consensus 333 GtY~CvA~N~ 342 (767)
|.|.|.+.+.
T Consensus 87 G~Y~C~~~~~ 96 (111)
T 1i3g_L 87 ADYFCQQYSS 96 (111)
T ss_dssp SEEEEEECSS
T ss_pred EEEEEEEecC
Confidence 9999999865
No 410
>4hwn_A FC receptor-like A; FCRLA, FCRL, IG-C2 domain, IG superfamily, immune system, ST genomics, PSI-biology; 2.01A {Homo sapiens}
Probab=96.28 E-value=0.0021 Score=56.78 Aligned_cols=62 Identities=24% Similarity=0.369 Sum_probs=44.7
Q ss_pred eecccccccccccccccCCC-----cEEEeecCeeccCCCcccccccceeecccCcceeeeEEEEeeeccCCCCceeEee
Q psy12044 265 EIQEGKNVSLLCKVSAIPEA-----KITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCVA 339 (767)
Q Consensus 265 ~v~~G~~vsL~C~a~g~P~p-----~itW~~~g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~GtY~CvA 339 (767)
.+.+|+.++|.|.+...+.. .+.|.+++..+.. ......|.|.++...|.|.|.|.+
T Consensus 18 ~v~~G~~VtL~C~~~~~~~~~~~~~~~~w~k~g~~l~~------------------~~~~~~l~i~~v~~~dsG~Y~C~~ 79 (108)
T 4hwn_A 18 EPQAGSPMTLSCQTKLPLQRSAARLLFSFYKDGRIVQS------------------RGLSSEFQIPTASEDHSGSYWCEA 79 (108)
T ss_dssp SCBTTCCEEEEEEC---------CCEEEEEETTEEEEE------------------EESCCEEEESSCCGGGCEEEEEEE
T ss_pred cCCCCCcEEEEEcccCCCCCcCcceEEEEEECCcCccC------------------CCcccEEEeCccCcccCeEEEEEE
Confidence 46689999999998765544 4899998876531 012357899999999999999999
Q ss_pred ccCCC
Q psy12044 340 ENQAG 344 (767)
Q Consensus 340 ~N~~G 344 (767)
.+..+
T Consensus 80 ~~~~~ 84 (108)
T 4hwn_A 80 ATEDN 84 (108)
T ss_dssp ECTTS
T ss_pred EeCCC
Confidence 98754
No 411
>3mj6_A Junctional adhesion molecule-like; immunoglobulin tandem domain, cell adhesion, cell junction, glycoprotein, immunoglobulin domain, membrane; HET: NAG FUC; 2.19A {Mus musculus} PDB: 3mj7_A* 3mj9_A*
Probab=96.27 E-value=0.0041 Score=63.18 Aligned_cols=97 Identities=16% Similarity=0.250 Sum_probs=59.2
Q ss_pred CCccceeeccccccccccccc---ccCCCcEEEeecCeeccCCCcc----------ccc-ccceeecccCcceeeeEEEE
Q psy12044 259 PSTFYLEIQEGKNVSLLCKVS---AIPEAKITWLFDGVPIQNESMS----------ASE-SHAVYSTEEGTEIKKSELLI 324 (767)
Q Consensus 259 ~~~~~~~v~~G~~vsL~C~a~---g~P~p~itW~~~g~~l~~~s~~----------~~~-~~~~~~~~~g~~~~~s~L~I 324 (767)
..+..+.+.+|+.+.|.|.+. +.+.+.+.|.+.+......... ... .....+. .........|.|
T Consensus 10 ~~~~~~~v~~G~~v~L~C~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~-~~~~~~~~~L~I 88 (268)
T 3mj6_A 10 VSSPQLRVHVGESVLMGCVVQRTEEKHVDRVDWLFSKDKDDASEYVLFYYSNLSVPTGRFQNRSHLV-GDTFHNDGSLLL 88 (268)
T ss_dssp --CCEEEEETTCCEEECCBCCCSSCCCEEEEEEEEESSSTTCCEEEEEEETTEEEECGGGTTTEEEC-SCTTTTBCCEEE
T ss_pred cCCCceEEecCCcEEEEEEeecCCCCceEEEEEEEeCCCCCceEEEEEEcCCCcccCccccCceEEe-ecCCCCEEEEEE
Confidence 344457788999999999988 6778889999954322111000 000 0011111 111223467999
Q ss_pred eeeccCCCCceeEeeccCCCCcccceEEEEEe
Q psy12044 325 YNSNIDDNGTFVCVAENQAGSTSSNYTIRIVL 356 (767)
Q Consensus 325 ~nvs~sD~GtY~CvA~N~~G~s~~s~sL~V~~ 356 (767)
.++..+|.|.|.|.+.+..+.......+.+.+
T Consensus 89 ~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~l~V 120 (268)
T 3mj6_A 89 QDVQKADEGIYTCEIRLKNESMVMKKPVELWV 120 (268)
T ss_dssp CSCCGGGCEEEEEEEEETTCCCEEEEEEEEEE
T ss_pred CCCCHhHCEEEEEEEEecCCcceEEEEEEEEE
Confidence 99999999999999998766554434444433
No 412
>3rrq_A Protein PD-1, programmed cell death protein 1; programmed death-1, costimulatory, immune system; 2.10A {Homo sapiens}
Probab=96.26 E-value=0.0054 Score=56.00 Aligned_cols=96 Identities=19% Similarity=0.277 Sum_probs=58.5
Q ss_pred ccceeecccccccccccccccC-CCcEEEeec--Cee---ccC--CCccccc-ccceeecccCcceeeeEEEEeeeccCC
Q psy12044 261 TFYLEIQEGKNVSLLCKVSAIP-EAKITWLFD--GVP---IQN--ESMSASE-SHAVYSTEEGTEIKKSELLIYNSNIDD 331 (767)
Q Consensus 261 ~~~~~v~~G~~vsL~C~a~g~P-~p~itW~~~--g~~---l~~--~s~~~~~-~~~~~~~~~g~~~~~s~L~I~nvs~sD 331 (767)
+..+.+.+|+.++|.|...+.. ...+.|++. +.. +.. ....... ..++.... ........|.|.++..+|
T Consensus 8 P~~~~v~~G~~vtL~C~~s~~~~~~~v~Wyrq~~g~~~~~l~~~~~~~~~~~~~~Rf~~~~-~~~~~~~sL~I~~~~~~D 86 (129)
T 3rrq_A 8 PALLVVTEGDNATFTCSFSNTSESFVLNWYRMSPSNQTDKLAAFPEDRSQPGQDCRFRVTQ-LPNGRDFHMSVVRARRND 86 (129)
T ss_dssp CSEEEEETTSCEEEEEECCCCC-CEEEEEEEEESTTSCEEEEEETC--------CCEEEEE-CTTSSEEEEEESSCCGGG
T ss_pred CCEEEEeCCCCEEEEeEecCCCCCcEEEEeEeCCCCCccEEEEEcCCccCCCcCCcEEEEE-cCCCCEEEEEECCCChhH
Confidence 3456788999999999988764 567899872 211 110 0000000 11121111 122335689999999999
Q ss_pred CCceeEeeccCCCCc----ccceEEEEEee
Q psy12044 332 NGTFVCVAENQAGST----SSNYTIRIVLK 357 (767)
Q Consensus 332 ~GtY~CvA~N~~G~s----~~s~sL~V~~~ 357 (767)
.|.|.|.+.+..+.. ...+.|.|..+
T Consensus 87 sg~Y~C~~~~~~~~~~~~~s~~~~L~V~~~ 116 (129)
T 3rrq_A 87 SGTYLCGAISLAPKLQIKESLRAELRVTER 116 (129)
T ss_dssp CEEEEEEEEECGGGCEEEECCCEEEEEECC
T ss_pred CEEEEEEEEecCCCceeeEeceEEEEEecC
Confidence 999999999876654 34466666543
No 413
>1xt5_A Variable region-containing chitin-binding protein 3; innate immunity, VCBP, primordial antigen receptor, florida lancelet, amphioxus; 1.15A {Branchiostoma floridae}
Probab=96.26 E-value=0.0043 Score=56.31 Aligned_cols=80 Identities=16% Similarity=0.263 Sum_probs=50.8
Q ss_pred ccceeecccccccccccccc---cCCCcEEEeecCeeccCCCcc-----------------------cccccceeecccC
Q psy12044 261 TFYLEIQEGKNVSLLCKVSA---IPEAKITWLFDGVPIQNESMS-----------------------ASESHAVYSTEEG 314 (767)
Q Consensus 261 ~~~~~v~~G~~vsL~C~a~g---~P~p~itW~~~g~~l~~~s~~-----------------------~~~~~~~~~~~~g 314 (767)
+..+.+..|+.++|.|.... .+.+.+.|.+.........+. .....++.+..
T Consensus 11 ~~~v~v~~G~~v~L~C~~~~~~~~~~~~v~W~k~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~-- 88 (135)
T 1xt5_A 11 HTEVEVHAGGTVELPCSYQLANDTQPPVISWLKGASPDRSTKVFKGNYNWQGEGLGFVESDSYKESFGDFLGRASVAN-- 88 (135)
T ss_dssp CSEEEEETTSCEEECCEEEEETCCSCCEEEEEEESSSSSEEEEEEEEECCCCTTCCCCTTSEEEEECGGGTTTEEESC--
T ss_pred CceEEEeCCCCEEEeeEeecCCCCCccEEEEEeeCCCCCceEEEEeccccccccccccccccccccChhhcCcEEEec--
Confidence 34567889999999998753 577899999854221000000 00001111111
Q ss_pred cceeeeEEEEeeeccCCCCceeEeeccCCC
Q psy12044 315 TEIKKSELLIYNSNIDDNGTFVCVAENQAG 344 (767)
Q Consensus 315 ~~~~~s~L~I~nvs~sD~GtY~CvA~N~~G 344 (767)
.....|.|.++..+|.|.|.|.+.+..+
T Consensus 89 --~~~~sL~I~~v~~~D~G~Y~C~v~~~~~ 116 (135)
T 1xt5_A 89 --LAAPTLRLTHVHPQDGGRYWCQVAQWSI 116 (135)
T ss_dssp --TTSCCEEECSCCGGGCEEEEEEEECSSC
T ss_pred --CCCCeEEECCCChhhCcEEEEEEEcCCc
Confidence 1246799999999999999999988654
No 414
>3khq_A B-cell antigen receptor complex-associated protei chain; CD79B, CD79A, IG-beta, BCR, IG domain, V-SET, immunoglobulin protein binding; HET: FLC GSH; 1.70A {Mus musculus} PDB: 3kho_A*
Probab=96.26 E-value=0.0053 Score=56.48 Aligned_cols=77 Identities=18% Similarity=0.284 Sum_probs=51.7
Q ss_pred CccceeecccccccccccccccCCCcEEEeec--CeeccCCCcccccccceeecccCcceeeeEEEEeeeccCCCCceeE
Q psy12044 260 STFYLEIQEGKNVSLLCKVSAIPEAKITWLFD--GVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVC 337 (767)
Q Consensus 260 ~~~~~~v~~G~~vsL~C~a~g~P~p~itW~~~--g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~GtY~C 337 (767)
.+....+.+|+.++|.|.+.+. +.+.|+++ +........ ...++..... .....|.|.++..+|.|.|.|
T Consensus 23 ~p~~~~v~~G~~v~L~C~~~~~--~~v~W~r~~~g~~~~~l~~---~~~r~~~~~~---~~~~~L~I~~~~~~DsG~Y~C 94 (133)
T 3khq_A 23 HPRFAAKKRSSMVKFHCYTNHS--GALTWFRKRGSQQPQELVS---EEGRIVQTQN---GSVYTLTIQNIQYEDNGIYFC 94 (133)
T ss_dssp ECSEEEECTTCCEEEEEEESSS--SCEEEEEECTTSCCEECCC---TTTTEEEEEE---TTEEEEEECSCCGGGCEEEEE
T ss_pred cCceEEEeCCCeEEEEEEeCCC--CEEEEEEeCCCCCCEEEEE---eCCCEEEEcC---CCEEEEEECCCChHHCEEEEE
Confidence 3456678899999999999887 89999985 221110000 0111221111 124679999999999999999
Q ss_pred eeccCCC
Q psy12044 338 VAENQAG 344 (767)
Q Consensus 338 vA~N~~G 344 (767)
.+.|..|
T Consensus 95 ~a~n~~g 101 (133)
T 3khq_A 95 KQKCDSA 101 (133)
T ss_dssp EESSCC-
T ss_pred EEEeCCC
Confidence 9999865
No 415
>3d9a_L Light chain of hyhel10 antibody fragment (FAB); lysozyme, antigen, allergen, antimic bacteriolytic enzyme, glycosidase, hydrolase; 1.20A {Mus musculus} PDB: 3hfm_L 1xgp_A 1xgq_A 1xgr_A 1xgt_A 1dqq_A 1dqm_L 1dqj_A 1nby_A 1nbz_A 1ndg_A 1ndm_A 1xgu_A 1fh5_L 1bm3_L 1opg_L 1mlb_A 1mlc_A 1rih_L 1p2c_A ...
Probab=96.25 E-value=0.0021 Score=63.00 Aligned_cols=77 Identities=17% Similarity=0.395 Sum_probs=53.9
Q ss_pred cccccccccccccc-cCCC-cEEEeecCeeccCCCcccccccceeecccCcceeeeEEEEeeeccCCCCceeEeeccCCC
Q psy12044 267 QEGKNVSLLCKVSA-IPEA-KITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCVAENQAG 344 (767)
Q Consensus 267 ~~G~~vsL~C~a~g-~P~p-~itW~~~g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~GtY~CvA~N~~G 344 (767)
..|..+.|.|.+.+ .|.+ .+.|.+++..+....... .......++.....+.|.|.++...|.|.|+|.|.|...
T Consensus 125 ~~g~~~~l~C~~~g~~p~~~~v~W~k~g~~~~~~~~~~---~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~~ 201 (213)
T 3d9a_L 125 LTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNS---WTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTS 201 (213)
T ss_dssp HHTTEEEEEEEEEEEBSSCCEEEEEETTEEECTTEEEE---ECCCCTTTCCEEEEEEEEEEHHHHHHCCEEEEEEECTTC
T ss_pred cCCCcEEEEEEEeeecCCceEEEEEcCCCcCcceeeec---CCCccCCCCCEEEEEEEEEeccccCCCCEEEEEEEEccC
Confidence 36889999999987 5555 899999988765431100 001111223334467899999999999999999999876
Q ss_pred Cc
Q psy12044 345 ST 346 (767)
Q Consensus 345 ~s 346 (767)
..
T Consensus 202 ~~ 203 (213)
T 3d9a_L 202 TS 203 (213)
T ss_dssp SS
T ss_pred CC
Confidence 54
No 416
>2q87_A CMRF35-H antigen; all-beta, immunoglobulin, IG-superfamily, IG-V, NKP44-like, natural killer cell IG-like receptor, inhibitory receptor; 1.70A {Homo sapiens}
Probab=96.23 E-value=0.0069 Score=53.21 Aligned_cols=93 Identities=12% Similarity=0.135 Sum_probs=54.8
Q ss_pred ceeecccccccccccccccC-CCcEEEeecC--ee---ccC-CCcccccccceeecccCcceeeeEEEEeeeccCCCCce
Q psy12044 263 YLEIQEGKNVSLLCKVSAIP-EAKITWLFDG--VP---IQN-ESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTF 335 (767)
Q Consensus 263 ~~~v~~G~~vsL~C~a~g~P-~p~itW~~~g--~~---l~~-~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~GtY 335 (767)
.+.+.+|+.++|.|...... ...+.|.+.. .. +.. .........++.... ........|.|.++..+|.|.|
T Consensus 5 ~v~~~~G~~v~L~C~~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~R~~~~~-~~~~~~~~L~I~~~~~~DsG~Y 83 (110)
T 2q87_A 5 TVAGPVGGSLSVQCPYEKEHRTLNKYWCRPPQIFLCDKIVETKGSAGKRNGRVSIRD-SPANLSFTVTLENLTEEDAGTY 83 (110)
T ss_dssp EEEECTTSCEEEEEECCGGGTTSEEEEESCCSSSSCCCSEESSSTTCSEETTEEEEE-EGGGTEEEEEESSCCGGGCEEE
T ss_pred EEEEeCCCcEEEEeEecCCcCCceEEEEecCCCCCCeEEEEeCCccccccCCEEEEE-cCcCCEEEEEEccCCHHHCEEE
Confidence 45778999999999987654 3689998743 11 110 000000011111111 1122346899999999999999
Q ss_pred eEeeccCC-C-CcccceEEEEEe
Q psy12044 336 VCVAENQA-G-STSSNYTIRIVL 356 (767)
Q Consensus 336 ~CvA~N~~-G-~s~~s~sL~V~~ 356 (767)
.|.+.+.. | .....+.+.+.+
T Consensus 84 ~C~~~~~~~g~~~~~~~~v~v~V 106 (110)
T 2q87_A 84 WCGVDTPWLQDFHDPVVEVEVSV 106 (110)
T ss_dssp EEEEECTTSCCBCCCSEEEEEEE
T ss_pred EEEEecCccCccCCccEEEEEEE
Confidence 99998875 4 122344444444
No 417
>2r15_A Myomesin-1; sarcomeric protein, IG-like domains, homodimer, immunoglobul domain, muscle protein, thick filament, contractIle protein; 2.24A {Homo sapiens}
Probab=96.23 E-value=0.0027 Score=61.85 Aligned_cols=71 Identities=17% Similarity=0.237 Sum_probs=50.0
Q ss_pred cccccccccccccc-CCCcEEEeecCeeccCCCcccccccceeecccCcceeeeEEEEeeeccCCCCceeEeeccCCCCc
Q psy12044 268 EGKNVSLLCKVSAI-PEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCVAENQAGST 346 (767)
Q Consensus 268 ~G~~vsL~C~a~g~-P~p~itW~~~g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~GtY~CvA~N~~G~s 346 (767)
.+..+.|.|.+.+. |.+.+.|.+++..+..... +..... .....|.|.++..+|.|.|.|.+.|..|..
T Consensus 16 ~~~~~~l~C~~~~~~p~~~i~W~~~g~~i~~~~~-------~~~~~~---~~~~~L~i~~v~~~D~G~Y~C~~~n~~~~~ 85 (212)
T 2r15_A 16 TAEGIQLYSFVTYYVEDLKVNWSHNGSAIRYSDR-------VKTGVT---GEQIWLQINEPTPNDKGKYVMELFDGKTGH 85 (212)
T ss_dssp CSSEEEEEEEBSSCCSSCEEEEEETTEECCCCSS-------EEEEEE---TTEEEEEEESCCGGGCEEEEEEEECSSCEE
T ss_pred cCceEEEEEEEeccCCCceEEEEECCEEccCCCe-------EEEEEe---CCEEEEEECCCCcccCEEEEEEEecCCcce
Confidence 45566788888775 5889999999877654321 111111 123569999999999999999999977654
Q ss_pred cc
Q psy12044 347 SS 348 (767)
Q Consensus 347 ~~ 348 (767)
..
T Consensus 86 ~~ 87 (212)
T 2r15_A 86 QK 87 (212)
T ss_dssp EE
T ss_pred EE
Confidence 43
No 418
>1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB: 2om5_A
Probab=96.22 E-value=0.0036 Score=67.23 Aligned_cols=78 Identities=26% Similarity=0.273 Sum_probs=61.6
Q ss_pred ceeecccccccccccccccCCCcEEEeecCeeccCCCcccccccceeecccCcceeeeEEEEeeeccCCCCceeEeeccC
Q psy12044 263 YLEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCVAENQ 342 (767)
Q Consensus 263 ~~~v~~G~~vsL~C~a~g~P~p~itW~~~g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~GtY~CvA~N~ 342 (767)
...+..|..+.|.|.+.+.|.+.+.|.+++..+... .......|.|.++...|.|.|.|.+.|.
T Consensus 216 ~~~~~~G~~v~l~C~~~g~p~~~i~W~~~~~~~~~~----------------~~~~~~~L~i~~~~~~d~G~Y~C~a~n~ 279 (382)
T 1cs6_A 216 DTYALTGQMVTLECFAFGNPVPQIKWRKLDGSQTSK----------------WLSSEPLLHIQNVDFEDEGTYECEAENI 279 (382)
T ss_dssp EEEEETTCCEEEECEEEEESCCEEEEEECCSCCSCC----------------CSBSSSEEEECSCCGGGCEEEEEEEEET
T ss_pred ceEEeCCCeEEEEEEEccCCCCEEEEEECCcccccE----------------EecCCcEEEEccCChhhCEEEEEEEEcC
Confidence 456778999999999999999999999976554320 0122357999999999999999999999
Q ss_pred CCCcccceEEEEEe
Q psy12044 343 AGSTSSNYTIRIVL 356 (767)
Q Consensus 343 ~G~s~~s~sL~V~~ 356 (767)
.|.....+.+.|..
T Consensus 280 ~g~~~~~~~l~V~~ 293 (382)
T 1cs6_A 280 KGRDTYQGRIIIHA 293 (382)
T ss_dssp TEEEEEEEEEEEEE
T ss_pred CCeEEEEEEEEEec
Confidence 98877766666654
No 419
>1dr9_A B7-1 (CD80), T lymphocyte activation antigen; IG superfamily, immune system; HET: NAG; 3.00A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1i8l_A*
Probab=96.22 E-value=0.0049 Score=59.79 Aligned_cols=76 Identities=17% Similarity=0.352 Sum_probs=50.2
Q ss_pred ccccccccccccc-ccCCCcEEEeecCeeccCCCcccccccceeeccc-CcceeeeEEEEeeeccCCCCceeEeeccCCC
Q psy12044 267 QEGKNVSLLCKVS-AIPEAKITWLFDGVPIQNESMSASESHAVYSTEE-GTEIKKSELLIYNSNIDDNGTFVCVAENQAG 344 (767)
Q Consensus 267 ~~G~~vsL~C~a~-g~P~p~itW~~~g~~l~~~s~~~~~~~~~~~~~~-g~~~~~s~L~I~nvs~sD~GtY~CvA~N~~G 344 (767)
..|..+.|.|.+. +.|.|.+.|.+++..+..... ....... +..... .+..+...|.|.|+|.|.|..|
T Consensus 119 ~~g~~~~l~C~~~~g~P~p~i~W~k~g~~l~~~~~------~~~~~~~~~~~~~~---~~~~v~~~d~g~Y~C~a~n~~~ 189 (201)
T 1dr9_A 119 PTSNIRRIICSTSGGFPEPHLSWLENGEELNAINT------TVSQDPETELYAVS---SKLDFNMTTNHSFMCLIKYGHL 189 (201)
T ss_dssp SSTTEEEEEEEEEEESSCEEEEEEESSCEECCSEE------EEEECTTTCCEEEE---EEEEEETTSCEEEEEEEEETTC
T ss_pred CCCCeEEEEEecCCccCCCEEEEEECCEECccccc------eEEecCCCcEEEEE---EEEEEEecCCCEEEEEEecCcc
Confidence 4577889999995 999999999998877653211 0111111 111111 2344556899999999999998
Q ss_pred CcccceE
Q psy12044 345 STSSNYT 351 (767)
Q Consensus 345 ~s~~s~s 351 (767)
...+.+.
T Consensus 190 ~~s~~~~ 196 (201)
T 1dr9_A 190 RVNQTFN 196 (201)
T ss_dssp CEEEEEE
T ss_pred eeeeEEe
Confidence 7665443
No 420
>1oll_A NK receptor; immune system/receptor, NK cell triggering receptor, immune system, IG domain, cytotoxicity, C2-type IG-like domains; 1.93A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4
Probab=96.20 E-value=0.004 Score=60.14 Aligned_cols=65 Identities=15% Similarity=0.287 Sum_probs=48.5
Q ss_pred eeecccccccccccccccCCCcEEEeecCeeccCCCcccccccceeecccCcceeeeEEEEeeeccCCCCceeEeeccCC
Q psy12044 264 LEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCVAENQA 343 (767)
Q Consensus 264 ~~v~~G~~vsL~C~a~g~P~p~itW~~~g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~GtY~CvA~N~~ 343 (767)
..+.+|+.++|.|.+.+ +.+.+.|++++..+... .. .......|.|.++..+|.|.|.|.|.|..
T Consensus 108 ~~v~~G~~v~L~C~~~~-~~~~~~w~k~g~~~~~~---------~~-----~~~~~~~L~I~~v~~~d~G~Y~C~a~n~~ 172 (188)
T 1oll_A 108 PEVISGEKVTFYCRLDT-ATSMFLLLKEGRSSHVQ---------RG-----YGKVQAEFPLGPVTTAHRGTYRCFGSYNN 172 (188)
T ss_dssp SEEETTCEEEEEEECSS-SCSEEEEEEESSSCEEE---------EE-----ECSSEEEEEEEECCGGGCEEEEEECEEET
T ss_pred CccccCCEEEEEEEcCC-CCCEEEEEECCcccccc---------cc-----CCCceeEEEECCCCcCCCcEEEEEEEcCC
Confidence 35678999999999876 45689999987654320 00 01234689999999999999999998764
No 421
>2ny1_B T-cell surface glycoprotein CD4; HIV, GP120, CD4, viral protein-immune system compl; HET: NAG SUC; 1.99A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 2nxz_B* 2ny0_B* 2nxy_B* 2ny2_B* 2ny3_B* 2ny4_B* 2ny5_C* 2ny6_B* 3jwd_C* 3jwo_C* 1g9m_C* 1g9n_C* 1gc1_C* 1rzj_C* 1rzk_C* 3o2d_A 3cd4_A 3lqa_C* 2b4c_C* 2qad_B* ...
Probab=96.19 E-value=0.0041 Score=59.50 Aligned_cols=82 Identities=21% Similarity=0.305 Sum_probs=53.3
Q ss_pred ceeecccccccccccccccCCCcEEEeecCee--ccCCC-ccc----ccccceeecccCcceeeeEEEEeeeccCCCCce
Q psy12044 263 YLEIQEGKNVSLLCKVSAIPEAKITWLFDGVP--IQNES-MSA----SESHAVYSTEEGTEIKKSELLIYNSNIDDNGTF 335 (767)
Q Consensus 263 ~~~v~~G~~vsL~C~a~g~P~p~itW~~~g~~--l~~~s-~~~----~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~GtY 335 (767)
.+.+.+|+.+.|.|.+.+.+.+.+.|.+++.. +.... ... .....+.............|.|.++..+|.|.|
T Consensus 4 ~v~~~~G~~v~L~C~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~L~i~~v~~~D~G~Y 83 (184)
T 2ny1_B 4 VVLGKKGDTVELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQGNFPLIIKNLKIEDSDTY 83 (184)
T ss_dssp EEEEETTSCEEECCBCSSSSCCCEEEEETTCCEEEEEETTEEEECSCTTGGGEECCGGGGGGTBCCEEECSCCGGGCEEE
T ss_pred cEEEeCCCCEEEEEEEcCCCceEEEEEeCCccceEEecCceEecCChhhCCccccccccccCCeEEEEEecCCHHHCEEE
Confidence 35678899999999999999999999997642 21000 000 000011111111122245699999999999999
Q ss_pred eEeeccCCC
Q psy12044 336 VCVAENQAG 344 (767)
Q Consensus 336 ~CvA~N~~G 344 (767)
.|.+.|..|
T Consensus 84 ~C~~~~~~~ 92 (184)
T 2ny1_B 84 ICEVEDQKE 92 (184)
T ss_dssp EEEETTEEE
T ss_pred EEEEEcCCC
Confidence 999998754
No 422
>4frw_A Poliovirus receptor-related protein 4; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; 3.50A {Homo sapiens}
Probab=96.19 E-value=0.0058 Score=59.09 Aligned_cols=87 Identities=11% Similarity=0.177 Sum_probs=55.9
Q ss_pred cceeecccccccccccccccCCC---cEEEeecCeeccCCCcc-----------cccccceeecccCcceeeeEEEEeee
Q psy12044 262 FYLEIQEGKNVSLLCKVSAIPEA---KITWLFDGVPIQNESMS-----------ASESHAVYSTEEGTEIKKSELLIYNS 327 (767)
Q Consensus 262 ~~~~v~~G~~vsL~C~a~g~P~p---~itW~~~g~~l~~~s~~-----------~~~~~~~~~~~~g~~~~~s~L~I~nv 327 (767)
..+++..|+.+.|.|.+.+.+.+ .+.|.+++......... ......+.+..........+|.|.++
T Consensus 7 ~~vtv~~G~~v~L~C~v~~~~~~~~~~V~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~sL~I~~v 86 (218)
T 4frw_A 7 DVVTVVLGQDAKLPCFYRGDSGEQVGQVAWARVDAGEGAQELALLHSKYGLHVSPAYEGRVEQPPPPRNPLDGSVLLRNA 86 (218)
T ss_dssp SEEEEETTSCEEECCEECCCTTCEEEEEEEEEECSSSCEEEEEEEETTTEEEECGGGTTTEECCSSCCCTTBCCEEESSC
T ss_pred CeEEEEcCCCEEEEEEEEcCCCCCccEEEEEECCCCCCceeEEEecCCCCeEeCccccceEEEecccccCCeEEEEEeec
Confidence 35678899999999999988865 48999865433211110 00011112222222233467999999
Q ss_pred ccCCCCceeEeeccCCCCccc
Q psy12044 328 NIDDNGTFVCVAENQAGSTSS 348 (767)
Q Consensus 328 s~sD~GtY~CvA~N~~G~s~~ 348 (767)
..+|.|.|.|.+.+..+....
T Consensus 87 ~~~D~G~Y~C~~~~~~~~~~~ 107 (218)
T 4frw_A 87 VQADEGEYECRVSTFPAGSFQ 107 (218)
T ss_dssp CGGGCEEEEEEEEEETTEEEE
T ss_pred cHHHCCceeEEEEeccCceee
Confidence 999999999999876654443
No 423
>1oll_A NK receptor; immune system/receptor, NK cell triggering receptor, immune system, IG domain, cytotoxicity, C2-type IG-like domains; 1.93A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4
Probab=96.18 E-value=0.0036 Score=60.49 Aligned_cols=79 Identities=14% Similarity=0.228 Sum_probs=54.2
Q ss_pred eecccccccccccccccCCCcEEEeecCeeccCCCcccccccceeecccCcceeeeEEEEeeeccCCCCceeEeeccCCC
Q psy12044 265 EIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCVAENQAG 344 (767)
Q Consensus 265 ~v~~G~~vsL~C~a~g~P~p~itW~~~g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~GtY~CvA~N~~G 344 (767)
.+..|+.++|.|.+.+ +.+.+.|++++..+..... ..........|.|.++...|.|.|.|.+.|..+
T Consensus 14 ~v~~G~~v~L~C~~~~-~~~~~~w~k~g~~~~~~~~-----------~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~ 81 (188)
T 1oll_A 14 MVPKEKQVTICCQGNY-GAVEYQLHFEGSLFAVDRP-----------KPPERINKVKFYIPDMNSRMAGQYSCIYRVGEL 81 (188)
T ss_dssp EEETTCCEEEEEECCT-TCCEEEEEETTEEEEEECC-----------SSCTTCCEEEEEESSCCGGGCEEEEEEEEETTE
T ss_pred cCCCCCCEEEEEecCC-CCCEEEEEECCCccccccc-----------ccCCCcceeEEEeCcCCcccCeEEEEEecCCCC
Confidence 5778999999999875 3468999998866532100 000122356799999999999999999988655
Q ss_pred Ccc--cceEEEEE
Q psy12044 345 STS--SNYTIRIV 355 (767)
Q Consensus 345 ~s~--~s~sL~V~ 355 (767)
... ..+.+.|.
T Consensus 82 ~~~~s~~~~l~V~ 94 (188)
T 1oll_A 82 WSEPSNLLDLVVT 94 (188)
T ss_dssp ECCCCCCEEEEEE
T ss_pred CCCCCCceEEEec
Confidence 433 33444443
No 424
>1q0x_L FAB 9B1, light chain; anti-morphine antibody, FAB fragment, immune system; HET: PG4; 1.60A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1q0y_L* 1ngp_L* 1ngq_L 3ks0_L* 1gig_L 2vir_A 2vis_A* 2vit_A 1sm3_L 4a6y_L 1ind_L* 1ine_L* 1yuh_L* 2zpk_L 3rhw_K* 3ri5_K* 3ria_K* 3rif_K* 1mfe_L* 1mfb_L* ...
Probab=96.18 E-value=0.0024 Score=62.60 Aligned_cols=75 Identities=13% Similarity=0.334 Sum_probs=52.6
Q ss_pred cccccccccccccccCCC--cEEEeecCeeccCCCcccccccceeecccCcceeeeEEEEeeeccCCCCceeEeeccCCC
Q psy12044 267 QEGKNVSLLCKVSAIPEA--KITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCVAENQAG 344 (767)
Q Consensus 267 ~~G~~vsL~C~a~g~P~p--~itW~~~g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~GtY~CvA~N~~G 344 (767)
..|..+.|.|.+.+.+.+ .+.|.+++..+...... .......++.....+.|.|......|.|.|+|.+.|...
T Consensus 128 ~~g~~v~L~C~~~g~~p~~~~v~W~k~g~~l~~~~~~----~~~~~~~~g~~~~~s~L~i~~~~~~d~g~Y~C~a~n~~~ 203 (212)
T 1q0x_L 128 LSTAKATLVCTITDFYPGVVTVDWKVDGTPVTAGMET----TQPSKQSNNKYMASSYLTLTARAWERHSSYSCQVTHEGH 203 (212)
T ss_dssp HTTTEEEEEEEEEEEBSSCCEEEEEETTEEECTTEEE----CCCEECTTSCEEEEEEEEEEHHHHTTCCEEEEEEEETTE
T ss_pred ccCCcEEEEEEEEEEeCCCeEEEEEECCEeCCCCeec----CCceeCCCCCEEEEEEEEEcHHHccCCCcEEEEEEeCCc
Confidence 468899999999886543 89999998876543110 001112233444567899999999999999999998765
Q ss_pred C
Q psy12044 345 S 345 (767)
Q Consensus 345 ~ 345 (767)
.
T Consensus 204 ~ 204 (212)
T 1q0x_L 204 S 204 (212)
T ss_dssp E
T ss_pred c
Confidence 4
No 425
>3r4d_A CEA-related cell adhesion molecule 1, isoform 1/2; immunoglobulin, beta-sandwich, mceacam1A - immunoglobulin FO spike NTD - galectin-like beta-sandwich fold; HET: NAG; 3.10A {Mus musculus} PDB: 1l6z_A*
Probab=96.18 E-value=0.0039 Score=60.55 Aligned_cols=92 Identities=13% Similarity=0.212 Sum_probs=56.0
Q ss_pred eeecccccccccccccccCCCcEEEeecCeeccCCCccccc--ccceee----cccCcceeeeEEEEeeeccCCCCceeE
Q psy12044 264 LEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASE--SHAVYS----TEEGTEIKKSELLIYNSNIDDNGTFVC 337 (767)
Q Consensus 264 ~~v~~G~~vsL~C~a~g~P~p~itW~~~g~~l~~~s~~~~~--~~~~~~----~~~g~~~~~s~L~I~nvs~sD~GtY~C 337 (767)
..+.+|+.+.|.|...+.+.+.+.|+++........+.... ...... .........+.|.|.++...|.|.|.|
T Consensus 9 ~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~r~~~~~~~~L~i~~v~~~D~G~Y~C 88 (208)
T 3r4d_A 9 PQVAEDNNVLLLVHNLPLALGAFAWYKGNTTAIDKEIARFVPNSNMNFTGQAYSGREIIYSNGSLLFQMITMKDMGVYTL 88 (208)
T ss_dssp SEEETTCCEEEEEECCCSSCSEEEEEESSCCCGGGEEEEEEGGGTEEEECTTCCSSEEECTTSCEEECSCCGGGCEEEEE
T ss_pred ceeecCCcEEEEEeCCCCCceEEEeccCCCCCccceEEEEecCCCccccCccccceeEEecCCeEEEccccccCCeEEEE
Confidence 46778999999999888899999998754322211110000 000000 000001123469999999999999999
Q ss_pred eeccCC-CCcccceEEEEE
Q psy12044 338 VAENQA-GSTSSNYTIRIV 355 (767)
Q Consensus 338 vA~N~~-G~s~~s~sL~V~ 355 (767)
.+.+.. +.....+.+.|.
T Consensus 89 ~~~~~~~~~~~~~~~l~V~ 107 (208)
T 3r4d_A 89 DMTDENYRRTQATVRFHVH 107 (208)
T ss_dssp EEECSSCEEEEEEEEEEEE
T ss_pred EEEcccCceeEEEEEEEec
Confidence 999985 333444455544
No 426
>3omz_A Human vdelta1 gamma delta T cell receptor delta1A; immunoglobulin fold, immune surveillance of cell stress PROT A/B, MIC-A/B binding, epithelium; 3.04A {Homo sapiens}
Probab=96.17 E-value=0.0039 Score=63.49 Aligned_cols=85 Identities=19% Similarity=0.304 Sum_probs=47.4
Q ss_pred CCccceeecccccccccccccccCCCcEEEeec--Cee---ccCCC------ccccccc-ceeecccCcceeeeEEEEee
Q psy12044 259 PSTFYLEIQEGKNVSLLCKVSAIPEAKITWLFD--GVP---IQNES------MSASESH-AVYSTEEGTEIKKSELLIYN 326 (767)
Q Consensus 259 ~~~~~~~v~~G~~vsL~C~a~g~P~p~itW~~~--g~~---l~~~s------~~~~~~~-~~~~~~~g~~~~~s~L~I~n 326 (767)
..+..+.+.+|+.++|.|.+.+.+.+.+.|++. +.. +.... ....... .... ..........|.|.+
T Consensus 7 ~~p~~~~v~~G~~v~L~C~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~-~~~~~~~~~~L~I~~ 85 (259)
T 3omz_A 7 GRTKSVIRQTGSSAEITCDLAEGSTGYIHWYLHQEGKAPQRLLYYDSYTSSVVLESGISPGKYD-TYGSTRKNLRMILRN 85 (259)
T ss_dssp ----CEEEETTCCEEEECCC-----CEEEEEEECTTSCCEEEEEEETTTCCEEECTTCCBTTEE-EECC--CCCEEEESS
T ss_pred cCCceeEecCCCcEEEEEEEccCCCcEEEEEEECCCCCcEEEEEEecCcCccccCCCCCcceeE-eecCCCCeEEEEECC
Confidence 344567788999999999999999999999872 211 10000 0000000 0000 001122345799999
Q ss_pred eccCCCCceeEeeccCCC
Q psy12044 327 SNIDDNGTFVCVAENQAG 344 (767)
Q Consensus 327 vs~sD~GtY~CvA~N~~G 344 (767)
+..+|.|.|.|.+.+..+
T Consensus 86 v~~~DsG~Y~C~~~~~~~ 103 (259)
T 3omz_A 86 LIENDSGVYYCATWDQNY 103 (259)
T ss_dssp CCGGGCEEEEEEEECTTS
T ss_pred CCcccCEEEEEEEeeCCc
Confidence 999999999999998765
No 427
>2wng_A Tyrosine-protein phosphatase non-receptor type substrate 1; signal regulatory protein alpha, immunoglobulin superfamily, phosphoprotein; HET: NAG; 2.49A {Homo sapiens}
Probab=96.17 E-value=0.0047 Score=64.98 Aligned_cols=77 Identities=23% Similarity=0.368 Sum_probs=49.8
Q ss_pred ecccccccccccccccCCC--cEEEeecCeeccCCCcccccccceeecccCcceeeeEEEEeeeccCCCCceeEeeccCC
Q psy12044 266 IQEGKNVSLLCKVSAIPEA--KITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCVAENQA 343 (767)
Q Consensus 266 v~~G~~vsL~C~a~g~P~p--~itW~~~g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~GtY~CvA~N~~ 343 (767)
+.+|..+.|.|.+.+.+.+ .+.|.+++..+..... .......++.....+.|.|..+..+|.|.|+|.|.|..
T Consensus 232 ~~~G~~v~l~C~~~g~~p~~~~v~W~k~g~~l~~~~~-----~~~~~~~~g~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~ 306 (327)
T 2wng_A 232 VRAENQVNVTCQVRKFYPQRLQLTWLENGNVSRTETA-----STVTENKDGTYNWMSWLLVNVSAHRDDVKLTCQVEHDG 306 (327)
T ss_dssp CSSTTCCEEEEEEEEEBSSCEEEEEEETTEEEEEEEC-----CSCEECTTSCEEEEEEEEC-------CCEEEEEEEETT
T ss_pred cCCCCcEEEEEEEccccCCCcEEEEEECCeEccCccc-----CceEECCCCcEEEEEEEEEccccccCCCEEEEEEEeCC
Confidence 5689999999999996544 7999999887654211 11122233444455678899999999999999999998
Q ss_pred CCcc
Q psy12044 344 GSTS 347 (767)
Q Consensus 344 G~s~ 347 (767)
|...
T Consensus 307 ~~~~ 310 (327)
T 2wng_A 307 QPAV 310 (327)
T ss_dssp CCCE
T ss_pred CCCc
Confidence 8653
No 428
>2fbo_J V1V2;, variable region-containing chitin-binding protein 3; immunoglobulin, VCBP, V-type, V SET, immune system; 1.85A {Branchiostoma floridae}
Probab=96.17 E-value=0.004 Score=62.35 Aligned_cols=82 Identities=17% Similarity=0.266 Sum_probs=54.8
Q ss_pred ccceeecccccccccccccc---cCCCcEEEeecCeeccCCCcc-----------------------cccccceeecccC
Q psy12044 261 TFYLEIQEGKNVSLLCKVSA---IPEAKITWLFDGVPIQNESMS-----------------------ASESHAVYSTEEG 314 (767)
Q Consensus 261 ~~~~~v~~G~~vsL~C~a~g---~P~p~itW~~~g~~l~~~s~~-----------------------~~~~~~~~~~~~g 314 (767)
...+.+.+|+.+.|.|.+.+ .+.+.+.|.+++.......+. .....+..+..
T Consensus 9 ~~~v~v~~G~~v~L~C~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~-- 86 (250)
T 2fbo_J 9 HTEVEVHAGGTVELPCSYQLANDTQPPVISWLKGASPDRSTKVFKGNYNWQGEGLGFVESDSYKESFGDFLGRASVAN-- 86 (250)
T ss_dssp CSEEEECTTSCEEECCEEEECSCCSCCEEEEEEEEETTEEEEEEEEEECCCBTTBCCCTTSEEEEECGGGTTTEECSC--
T ss_pred CCceEEecCCeEEEEEEeEcCCCCCceEEEEEeCCCCCccEEEEeeccccccccccccccccccccCCCcCceEEecc--
Confidence 34567889999999999987 788999999965332000000 00000011111
Q ss_pred cceeeeEEEEeeeccCCCCceeEeeccCCCCc
Q psy12044 315 TEIKKSELLIYNSNIDDNGTFVCVAENQAGST 346 (767)
Q Consensus 315 ~~~~~s~L~I~nvs~sD~GtY~CvA~N~~G~s 346 (767)
.....|.|.++..+|.|.|.|.+.+..+..
T Consensus 87 --~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~ 116 (250)
T 2fbo_J 87 --LAAPTLRLTHVHPQDGGRYWCQVAQWSIRT 116 (250)
T ss_dssp --TTSCCEEECSCCGGGCEEEEEEEECTTCCS
T ss_pred --CCcceEEEeeCChhhCeEEEEEeccCccCC
Confidence 123579999999999999999999987764
No 429
>3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, hematopoietic cytokine-receptor complex, cell surface, EXTR complex; 7.80A {Homo sapiens}
Probab=96.15 E-value=0.0068 Score=69.17 Aligned_cols=81 Identities=14% Similarity=0.231 Sum_probs=58.3
Q ss_pred ceeecccccccccccccccCCCcEEEeecCeeccCCCcccccccceeecccCcceeeeEEEEeeeccCCCCceeEeeccC
Q psy12044 263 YLEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCVAENQ 342 (767)
Q Consensus 263 ~~~v~~G~~vsL~C~a~g~P~p~itW~~~g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~GtY~CvA~N~ 342 (767)
.+++.+|+.++|.|.+.+.+...+.|++++..+....... ...+...+|.|.++..+|.|.|.|.+.|.
T Consensus 57 ~~~v~~g~~~~L~c~~~~~~~~~~~W~~~~~~l~~~~~~~-----------~~~r~~~SL~I~~v~~~D~G~Y~C~~~n~ 125 (527)
T 3qs9_E 57 AVEVDVSASITLQVLVDAPGNISCLWVFKHSSLNCQPHFD-----------LQNRGVVSMVILKMTETQAGEYLLFIQSE 125 (527)
T ss_dssp EEEECSSCCEEEEEECSCCSSCEEEEEETTEEECCCCBC----------------CEEEEEESSCCSSSCSEEEEEEEC-
T ss_pred eEEEeccccEEEEEEEecCCceeEEEEecCCccCcccccC-----------CCcceEEEEEECcCChhhCeeEEEEEEec
Confidence 6789999999999999999999999999877553222110 01122346999999999999999999998
Q ss_pred CCCcccceEEEE
Q psy12044 343 AGSTSSNYTIRI 354 (767)
Q Consensus 343 ~G~s~~s~sL~V 354 (767)
.|.....+.+.+
T Consensus 126 ~~~~~~~~~v~v 137 (527)
T 3qs9_E 126 ATNYTILFTVSI 137 (527)
T ss_dssp -CEEEEEEEEEE
T ss_pred cccEEEEEEEEE
Confidence 876655444433
No 430
>1ugn_A LIR1, leukocyte immunoglobulin-like receptor 1; immunoglobulin-like folds, immune system; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 3d2u_D* 1g0x_A 1p7q_D 1ufu_A 1vdg_A 2gw5_A 2dyp_D 2otp_A 3q2c_A
Probab=96.15 E-value=0.0027 Score=61.74 Aligned_cols=80 Identities=15% Similarity=0.208 Sum_probs=55.7
Q ss_pred eecccccccccccccccCCCcEEEeecCeeccCCCcccccccceeecccCcceeeeEEEEeeeccCCCCceeEeeccCC-
Q psy12044 265 EIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCVAENQA- 343 (767)
Q Consensus 265 ~v~~G~~vsL~C~a~g~P~p~itW~~~g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~GtY~CvA~N~~- 343 (767)
.+.+|+.++|.|.+.+.+. .+.|++++..+...... . ........|.|.++...|.|.|.|.+.|..
T Consensus 15 ~v~~G~~v~L~C~~~~~~~-~~~W~k~g~~~~~~~~~----~-------~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~~ 82 (198)
T 1ugn_A 15 VITQGSPVTLRCQGGQETQ-EYRLYREKKTAPWITRI----P-------QELVKKGQFPIPSITWEHTGRYRCYYGSDTA 82 (198)
T ss_dssp EEETTCCEEEEEECCTTCC-CEEEEESSSCCHHHHTS----C-------HHHHTTTEEEESSCCGGGCEEEEEEEEETTT
T ss_pred cccCCCcEEEEEEecCCCc-EEEEEECCccccccccc----c-------ccCCcccEEEECCCCHHHCeEEEEEEECCCC
Confidence 6779999999999998876 79999987655311000 0 001123579999999999999999999987
Q ss_pred CC--cccceEEEEEe
Q psy12044 344 GS--TSSNYTIRIVL 356 (767)
Q Consensus 344 G~--s~~s~sL~V~~ 356 (767)
|. ....+.+.|..
T Consensus 83 g~~~~s~~~~l~V~~ 97 (198)
T 1ugn_A 83 GRSESSDPLELVVTG 97 (198)
T ss_dssp EECCCCCCEEEEEEC
T ss_pred CcccCCccEEEEEcc
Confidence 52 23345555543
No 431
>4fmk_A Poliovirus receptor-related protein 2; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; HET: NAG BMA MAN FUC; 2.56A {Mus musculus} PDB: 4fn0_A* 4fs0_A*
Probab=96.14 E-value=0.007 Score=58.84 Aligned_cols=86 Identities=15% Similarity=0.267 Sum_probs=54.1
Q ss_pred ceeecccccccccccccccCCCc---EEEeecCeeccCCC-------c--ccccccceeec----ccCcceeeeEEEEee
Q psy12044 263 YLEIQEGKNVSLLCKVSAIPEAK---ITWLFDGVPIQNES-------M--SASESHAVYST----EEGTEIKKSELLIYN 326 (767)
Q Consensus 263 ~~~v~~G~~vsL~C~a~g~P~p~---itW~~~g~~l~~~s-------~--~~~~~~~~~~~----~~g~~~~~s~L~I~n 326 (767)
.+.+..|+.+.|.|.+.+.+.+. +.|.+++....... . .........+. .........+|.|.+
T Consensus 10 ~V~~~~G~~v~L~C~~~~~~~~~~~~V~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sL~I~~ 89 (225)
T 4fmk_A 10 EVRGRLGGTVELPCHLLPPTTERVSQVTWQRLDGTVVAAFHPSFGVDFPNSQFSKDRLSFVRARPETNADLRDATLAFRG 89 (225)
T ss_dssp EEEEETTSCEEECCEECSSCCCEEEEEEEECTTSCEEEEEETTTEEECCCTTSCTTTEEECCCSCSCCSSCCBCCEEECS
T ss_pred EEEEecCCCEEEEEEEECCCCCceeEEEEEECCCcceEEEecccceeeccccccccceeeeccccccccccCcEEEEEcc
Confidence 35678899999999998877664 78998653321100 0 00000001111 111223356799999
Q ss_pred eccCCCCceeEeeccCCCCccc
Q psy12044 327 SNIDDNGTFVCVAENQAGSTSS 348 (767)
Q Consensus 327 vs~sD~GtY~CvA~N~~G~s~~ 348 (767)
+..+|.|.|.|.+.+..+....
T Consensus 90 v~~~D~G~Y~C~~~~~~~~~~~ 111 (225)
T 4fmk_A 90 LRVEDEGNYTCEFATFPNGTRR 111 (225)
T ss_dssp CCGGGCEEEEEEEEEETTEEEE
T ss_pred CCHHHCcceEEEEEeCCCccee
Confidence 9999999999999987765544
No 432
>3d9a_L Light chain of hyhel10 antibody fragment (FAB); lysozyme, antigen, allergen, antimic bacteriolytic enzyme, glycosidase, hydrolase; 1.20A {Mus musculus} PDB: 3hfm_L 1xgp_A 1xgq_A 1xgr_A 1xgt_A 1dqq_A 1dqm_L 1dqj_A 1nby_A 1nbz_A 1ndg_A 1ndm_A 1xgu_A 1fh5_L 1bm3_L 1opg_L 1mlb_A 1mlc_A 1rih_L 1p2c_A ...
Probab=96.14 E-value=0.0078 Score=58.80 Aligned_cols=92 Identities=21% Similarity=0.255 Sum_probs=57.9
Q ss_pred ccceeecccccccccccccccCCCcEEEeecC--eecc---C-CCccccc-ccceeecccCcceeeeEEEEeeeccCCCC
Q psy12044 261 TFYLEIQEGKNVSLLCKVSAIPEAKITWLFDG--VPIQ---N-ESMSASE-SHAVYSTEEGTEIKKSELLIYNSNIDDNG 333 (767)
Q Consensus 261 ~~~~~v~~G~~vsL~C~a~g~P~p~itW~~~g--~~l~---~-~s~~~~~-~~~~~~~~~g~~~~~s~L~I~nvs~sD~G 333 (767)
+..+.+..|+.+.|.|.+.+.+.+.+.|+++. .... . ....... ...+.... ......|.|.++..+|.|
T Consensus 8 p~~~~v~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~---~~~~~~L~I~~v~~~D~G 84 (213)
T 3d9a_L 8 PATLSVTPGNSVSLSCRASQSIGNNLHWYQQKSHESPRLLIKYASQSISGIPSRFSGSG---SGTDFTLSINSVETEDFG 84 (213)
T ss_dssp CSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEE---ETTEEEEEESSCCGGGCE
T ss_pred CccEEEeCCCcEEEEEECCCCCCCCEEEEEeCCCCCcEEEEEEcccccccccccEEEEc---CCCEEEEEECCCChhhCE
Confidence 34567889999999999999999999998742 2110 0 0000000 01111111 112458999999999999
Q ss_pred ceeEeeccCCCCccc-ceEEEEE
Q psy12044 334 TFVCVAENQAGSTSS-NYTIRIV 355 (767)
Q Consensus 334 tY~CvA~N~~G~s~~-s~sL~V~ 355 (767)
.|.|.+.|..+.... ...+.|.
T Consensus 85 ~Y~C~~~~~~~~~~~~~~~l~V~ 107 (213)
T 3d9a_L 85 MYFCQQSNSWPYTFGGGTKLEIK 107 (213)
T ss_dssp EEEEEECSSSSCEECCCEEEEEC
T ss_pred EEEEeeecCCcceeCCCEEEEEe
Confidence 999999998775433 2345443
No 433
>1c1e_H Catalytic antibody 1E9 (heavy chain); diels-alder, immunoglobulin, immune system; HET: ENH; 1.90A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1dbb_H* 1dba_H* 1dbj_H* 1dbk_H* 1dbm_H* 2dbl_H* 3ojd_B 1jgl_H* 1jhk_H 1ghf_H 1tet_H* 3e8u_H 1fj1_B 1cl7_H
Probab=96.14 E-value=0.0022 Score=63.26 Aligned_cols=75 Identities=23% Similarity=0.305 Sum_probs=49.8
Q ss_pred eecccccccccccccc-cCCC-cEEEeecCeeccCCCcccccccceeecccCcceeeeEEEEeeeccCCCCceeEeeccC
Q psy12044 265 EIQEGKNVSLLCKVSA-IPEA-KITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCVAENQ 342 (767)
Q Consensus 265 ~v~~G~~vsL~C~a~g-~P~p-~itW~~~g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~GtY~CvA~N~ 342 (767)
.+..|..+.|.|.+.+ .|.| .+.|.+++..+...... . . ...+.....+.|.| .....|.|.|+|.|.|.
T Consensus 135 ~~~~g~~v~L~C~~~g~~P~p~~v~W~~~g~~~~~~~~~----~-~--~~~~~~~~~s~L~i-~~~~~d~g~Y~C~a~n~ 206 (219)
T 1c1e_H 135 AAQTNSMVTLGCLVKGYFPEPVTVTWNSGSLSSGVHTFP----A-V--LQSDLYTLSSSVTV-PSSPRPSETVTCNVAHP 206 (219)
T ss_dssp SSCCSSEEEEEEEEEEEBSSCCEEEEGGGTBCTTEEECC----C-E--ESSSCEEEEEEEEE-ESSSTTTSCCEEEEEEG
T ss_pred ccccCCeEEEEEEcccccCCCeEEEEEeCCcccceEecC----C-c--ccCCeEEEEEEEEE-ecccCCCCEEEEEEEeC
Confidence 3457899999999998 8998 99999987654211100 0 0 01133334567888 44444669999999998
Q ss_pred CCCcc
Q psy12044 343 AGSTS 347 (767)
Q Consensus 343 ~G~s~ 347 (767)
.|...
T Consensus 207 ~~~~~ 211 (219)
T 1c1e_H 207 ASSTK 211 (219)
T ss_dssp GGTEE
T ss_pred CCCcc
Confidence 77543
No 434
>2or7_A T-cell immunoglobulin and mucin domain- containing protein 2; beta barrel, immunoglobulin fold, IGV domain, TIM, immune system; 1.50A {Mus musculus}
Probab=96.13 E-value=0.0079 Score=53.28 Aligned_cols=84 Identities=18% Similarity=0.235 Sum_probs=51.1
Q ss_pred cceeeccccccccccccccc--CCCcEEEeecC-------eecc--CCC-cccccccceeecccCcceeeeEEEEeeecc
Q psy12044 262 FYLEIQEGKNVSLLCKVSAI--PEAKITWLFDG-------VPIQ--NES-MSASESHAVYSTEEGTEIKKSELLIYNSNI 329 (767)
Q Consensus 262 ~~~~v~~G~~vsL~C~a~g~--P~p~itW~~~g-------~~l~--~~s-~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~ 329 (767)
..+.+..|+.++|.|..... ....+.|.+.. ..+. ... ........+.+ ..........|.|.++..
T Consensus 5 ~~v~~~~G~~v~L~C~~~~~~~~~~~v~W~~~~~~~~~~~~~~i~~~~~~~~~~~~~r~~~-~~~~~~~~~sL~I~~v~~ 83 (115)
T 2or7_A 5 TAVQGLAGHPVTLPCIYSTHLGGIVPMCWGLGECRHSYCIRSLIWTNGYTVTHQRNSRYQL-KGNISEGNVSLTIENTVV 83 (115)
T ss_dssp -CEEEETTSCEEECCBCCHHHHCSCCEEEEESCHHHHTTTTEEEEECSSSEEEESSTTEEC-CSCGGGTBCCEEESSCCG
T ss_pred cEEEEEcCCCEEEEEEeecCCCCCEEEEEECCCCCcCCCceEEEEeCCeEcccccCccEEE-ecCccCCeEEEEEccCCH
Confidence 34678899999999998653 35689999864 1111 000 00000111111 111223456899999999
Q ss_pred CCCCceeEeeccCCCCc
Q psy12044 330 DDNGTFVCVAENQAGST 346 (767)
Q Consensus 330 sD~GtY~CvA~N~~G~s 346 (767)
+|.|.|.|.+.+.....
T Consensus 84 ~DsG~Y~C~v~~~~~~~ 100 (115)
T 2or7_A 84 GDGGPYCCVVEIPGAFH 100 (115)
T ss_dssp GGCEEEEEEECCTTSCE
T ss_pred HHCEEEEEEEECCCcee
Confidence 99999999998764433
No 435
>3tv3_L PGT128 light chain, IG lambda-2 chain C regions; FAB, HIV-1 neutralizing antibody, GP120, immune system; HET: PCA MAN GOL EPE; 1.29A {Homo sapiens} PDB: 3tyg_L* 3twc_L* 3tnm_L 2mcg_1 1mcw_M 1a8j_L 3mcg_1 1dcl_A 1mcb_A* 1mcc_A* 1mcd_A* 1mce_A* 1mcf_A* 1mch_A 1mci_A* 1mcj_A* 1mck_A 1mcl_A* 1mcn_A* 1mcq_A ...
Probab=96.13 E-value=0.0093 Score=58.23 Aligned_cols=88 Identities=10% Similarity=0.192 Sum_probs=56.4
Q ss_pred ceeecccccccccccccccCCCcEEEeec--Ceecc---C-CCcccc-cccceeecccCcceeeeEEEEeeeccCCCCce
Q psy12044 263 YLEIQEGKNVSLLCKVSAIPEAKITWLFD--GVPIQ---N-ESMSAS-ESHAVYSTEEGTEIKKSELLIYNSNIDDNGTF 335 (767)
Q Consensus 263 ~~~v~~G~~vsL~C~a~g~P~p~itW~~~--g~~l~---~-~s~~~~-~~~~~~~~~~g~~~~~s~L~I~nvs~sD~GtY 335 (767)
...+.+|+.+.|.|.+. +.+.+.|.++ +.... . ...... ....+.... ......|.|.++..+|.|.|
T Consensus 9 ~~~v~~G~~v~L~C~~~--~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~---~~~~~~L~I~~v~~~D~G~Y 83 (211)
T 3tv3_L 9 SASGSPGQSITISCTGT--SNNFVSWYQQHAGKAPKLVIYDVNKRPSGVPDRFSGSK---SGNTASLTVSGLQTDDEAVY 83 (211)
T ss_dssp EEEECTTCEEEEEEECC--CSSCEEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEE---ETTEEEEEEESCCGGGCEEE
T ss_pred eEEEcCCCCEEEEEEEC--CCCeEEEEEECCCCCCEEEEEEecccCCCCcCcEEEEc---cCCEEEEEECCCChhHCEEE
Confidence 67788999999999998 8899999983 22111 0 000000 001111111 22346799999999999999
Q ss_pred eEeeccCCC--CcccceEEEEE
Q psy12044 336 VCVAENQAG--STSSNYTIRIV 355 (767)
Q Consensus 336 ~CvA~N~~G--~s~~s~sL~V~ 355 (767)
.|.+.+..| .......+.|.
T Consensus 84 ~C~~~~~~~~~~~~~~~~l~V~ 105 (211)
T 3tv3_L 84 YCGSLVGNWDVIFGGGTKLTVL 105 (211)
T ss_dssp EEEEEETTTEEEECCCEEEEEC
T ss_pred EEEEecCCCceeECCCceEEEe
Confidence 999999877 33344555554
No 436
>3pv7_A B7-H6, IG-like domain-containing protein DKFZP686O24166/DKFZP686I21167; NK cell receptor, receptor-ligand complex, immune system; HET: NAG; 2.00A {Homo sapiens} PDB: 3pv6_A*
Probab=96.13 E-value=0.0054 Score=61.70 Aligned_cols=91 Identities=19% Similarity=0.228 Sum_probs=53.6
Q ss_pred ecccccccccccccc-cCCC-cEEEeecCeeccCCCcccccc--cceeecccCcceeeeEEEEeeeccCCCCceeEeecc
Q psy12044 266 IQEGKNVSLLCKVSA-IPEA-KITWLFDGVPIQNESMSASES--HAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCVAEN 341 (767)
Q Consensus 266 v~~G~~vsL~C~a~g-~P~p-~itW~~~g~~l~~~s~~~~~~--~~~~~~~~g~~~~~s~L~I~nvs~sD~GtY~CvA~N 341 (767)
...|..+.|.|.+.+ .|.+ .+.|.+++..+.......... ........+.....+.|.+......|.|.|+|.+.|
T Consensus 130 ~~~~~~~~L~C~~~g~~P~pi~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~g~YtC~a~n 209 (248)
T 3pv7_A 130 GMKENEDKYMCESSGFYPEAINITWEKQTQKFPHPIEISEDVITGPTIKNMDGTFNVTSCLKLNSSQEDPGTVYQCVVRH 209 (248)
T ss_dssp ------CEEEEEEEEEBSSCCEEEEEEECSSSCSCEEECTTEEEEEEEECTTSCEEEEEEEECC--CCCTTCEEEEEEEC
T ss_pred cccCCCcEEEEEEccEECCCeEEEEEECCccCCCccccccceeecccEECCCCCEEEEEEEEEcCccccCCCEEEEEEEC
Confidence 345677889999998 7888 999999886543221111110 011222334445567788888888899999999999
Q ss_pred CCCCcccceEEEEEe
Q psy12044 342 QAGSTSSNYTIRIVL 356 (767)
Q Consensus 342 ~~G~s~~s~sL~V~~ 356 (767)
..+.......+.+.+
T Consensus 210 ~~~~~~~~~~v~l~V 224 (248)
T 3pv7_A 210 ASLHTPLRSNFTLTA 224 (248)
T ss_dssp TTCSSCEEEEECC--
T ss_pred CCCCCCcEEEEEEEE
Confidence 988755544444433
No 437
>1lk3_L 9D7 light chain; antigen-antibody complex, immune system; 1.91A {Rattus norvegicus} SCOP: b.1.1.1 b.1.1.2 PDB: 1fn4_A 1c5d_L 1bfo_A 3b9k_L*
Probab=96.12 E-value=0.0033 Score=61.54 Aligned_cols=77 Identities=14% Similarity=0.361 Sum_probs=53.2
Q ss_pred ccccccccccccccc-CCC-cEEEeecCeeccCCCcccccccceeecccCcceeeeEEEEeeeccCCCCceeEeeccCCC
Q psy12044 267 QEGKNVSLLCKVSAI-PEA-KITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCVAENQAG 344 (767)
Q Consensus 267 ~~G~~vsL~C~a~g~-P~p-~itW~~~g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~GtY~CvA~N~~G 344 (767)
..|..+.|.|.+.+. |.+ .+.|.+++..+....... .......++.....+.|.|..+..+|.|.|+|.|.|...
T Consensus 124 ~~g~~v~l~C~~~g~~p~~~~v~W~k~g~~~~~~~~~~---~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~~ 200 (210)
T 1lk3_L 124 LATGGASVVCLMNNFYPRDISVKWKIDGTERRDGVLDS---VTDQDSKDSTYSMSSTLSLTKADYESHNLYTCEVVHKTS 200 (210)
T ss_dssp HTTTEEEEEEEEEEEBSSCCEEEEEETTEECCTTEEEE---ECCCCTTTCCEEEEEEEEEEHHHHHTCCEEEEEEECTTC
T ss_pred ccCCcEEEEEEEEeEeCCceEEEEEeCCccCCCCceEc---cCCccCCCCCEEEEEEEEEChHHhccCCcEEEEEEecCC
Confidence 468899999999874 443 899999988765431000 001111233344567899999999999999999999866
Q ss_pred Cc
Q psy12044 345 ST 346 (767)
Q Consensus 345 ~s 346 (767)
..
T Consensus 201 ~~ 202 (210)
T 1lk3_L 201 SS 202 (210)
T ss_dssp SS
T ss_pred CC
Confidence 43
No 438
>1itb_B Type 1 interleukin-1 receptor; immunoglobulin fold, transmembrane, glycoprotein, signal, complex (immunoglobulin/receptor); 2.50A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ira_Y* 4dep_B* 1g0y_R
Probab=96.11 E-value=0.0031 Score=65.75 Aligned_cols=82 Identities=16% Similarity=0.279 Sum_probs=58.4
Q ss_pred ceeecccccccccccccccC-CCcEEEeecCeeccCCCcccccccceeecccCcceeeeEEEEeeeccCCCCceeEeecc
Q psy12044 263 YLEIQEGKNVSLLCKVSAIP-EAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCVAEN 341 (767)
Q Consensus 263 ~~~v~~G~~vsL~C~a~g~P-~p~itW~~~g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~GtY~CvA~N 341 (767)
.+.+.+|+.+.|.|.+.+.+ .+.+.|.+++........ ... ......+.|.|.++...|.|.|.|.+.|
T Consensus 14 ~~~v~~G~~v~L~C~~~~~~~~~~v~W~k~~~~~~~~~~---~~~-------~~~~~~~~L~i~~v~~~D~G~Y~C~a~n 83 (315)
T 1itb_B 14 ILVSSANEIDVRPCPLNPNEHKGTITWYKDDSKTPVSTE---QAS-------RIHQHKEKLWFVPAKVEDSGHYYCVVRN 83 (315)
T ss_dssp CCEEETTSCCCCBCCCCSCCCSSCCCEECTTSCSCSCCC---TTS-------SSEECSSBEECTTCCGGGCSCCEECCCS
T ss_pred EEEEcCCCcEEEEeeccCcCCCceEEEEeCCCcCccccc---cCC-------cEeccCCeEEECCCChhhCEEEEEEEeC
Confidence 45778999999999999988 889999998753211100 000 0111234799999999999999999999
Q ss_pred CCCCcccceEEEE
Q psy12044 342 QAGSTSSNYTIRI 354 (767)
Q Consensus 342 ~~G~s~~s~sL~V 354 (767)
..|.....+.+.+
T Consensus 84 ~~g~~~~~~~v~v 96 (315)
T 1itb_B 84 SSYCLRIKISAKF 96 (315)
T ss_dssp SSCCCCEECCCEE
T ss_pred CceEEEEEEEEEE
Confidence 9887665554443
No 439
>2e27_L Anti-ciguatoxin antibody, light chain; immunoglobulin fold, immune system; HET: AB0; 1.70A {Mus musculus} PDB: 3iy1_A
Probab=96.11 E-value=0.0031 Score=56.80 Aligned_cols=79 Identities=20% Similarity=0.257 Sum_probs=51.6
Q ss_pred ccceeecccccccccccccccCCCcEEEeecC--e---ecc-CCCccccc-ccceeecccCcceeeeEEEEeeeccCCCC
Q psy12044 261 TFYLEIQEGKNVSLLCKVSAIPEAKITWLFDG--V---PIQ-NESMSASE-SHAVYSTEEGTEIKKSELLIYNSNIDDNG 333 (767)
Q Consensus 261 ~~~~~v~~G~~vsL~C~a~g~P~p~itW~~~g--~---~l~-~~s~~~~~-~~~~~~~~~g~~~~~s~L~I~nvs~sD~G 333 (767)
+..+.+.+|+.++|.|.+.+.+.+.+.|++.. . .+. ........ ..++... .......|.|.++..+|.|
T Consensus 10 p~~v~v~~G~~vtL~C~~~~~~~~~v~W~r~~~g~~~~~l~~~~~~~~~~~~~R~~~~---~~~~~~~L~I~~v~~~DsG 86 (119)
T 2e27_L 10 PSSLSASLGGKVTITCKANQDIKKKIAWYQHKPGKGPRLLIYYTSTLKSGISSRFSGS---GSGRDYSFSISNLEPEDAA 86 (119)
T ss_dssp CSEEEEETTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEE---EETTEEEEEECSCCGGGCE
T ss_pred CCeEEEeCCCCEEEEEEeCCCCCceEEEEEECCCCCCEEEEEECCccCCCCCCcEEEE---ccCCEEEEEECCCChHHCE
Confidence 34567889999999999998888899999842 1 111 10000000 1111111 1123457999999999999
Q ss_pred ceeEeeccC
Q psy12044 334 TFVCVAENQ 342 (767)
Q Consensus 334 tY~CvA~N~ 342 (767)
.|.|.+.+.
T Consensus 87 ~Y~C~~~~~ 95 (119)
T 2e27_L 87 TYYCLQYDN 95 (119)
T ss_dssp EEEEEECGG
T ss_pred EEEEEEccC
Confidence 999999874
No 440
>3r0n_A Poliovirus receptor-related protein 2; IG-domain, cell-adhesion molecule, virus entry receptor, STR genomics, PSI-biology; 1.30A {Homo sapiens} PDB: 4dfh_A 4dfi_A
Probab=96.11 E-value=0.0056 Score=55.21 Aligned_cols=87 Identities=18% Similarity=0.320 Sum_probs=51.1
Q ss_pred ceeecccccccccccccccCCC----cEEEeecCee-----c--c----CCCcccc--cccceeecccCcc--------e
Q psy12044 263 YLEIQEGKNVSLLCKVSAIPEA----KITWLFDGVP-----I--Q----NESMSAS--ESHAVYSTEEGTE--------I 317 (767)
Q Consensus 263 ~~~v~~G~~vsL~C~a~g~P~p----~itW~~~g~~-----l--~----~~s~~~~--~~~~~~~~~~g~~--------~ 317 (767)
.+.+..|+.++|.|.....+.+ .+.|.+.... + . ....... ...+..+...... .
T Consensus 11 ~v~~~~G~~v~L~C~~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~g~~~~~~~ 90 (128)
T 3r0n_A 11 EVRGQLGGTVELPCHLLPPVPGLYISLVTWQRPDAPANHQNVAAFHPKMGPSFPSPKPGSERLSFVSAKQSTGQDTEAEL 90 (128)
T ss_dssp EEECCTTSCEEECCEEESCCTTCEEEEEEEECTTSCGGGCEEEEEETTTEEECCSSSSCGGGEEESSCBCCCSTTCCCBC
T ss_pred eEEEEcCCCEEEEEEeecCCCCCcEEEEEEEEeCCCCCCeeEEEEecccCcccccccccCCcEEEeccccccccccccCC
Confidence 4577889999999998876655 7899985210 0 0 0000000 1112222222111 1
Q ss_pred eeeEEEEeeeccCCCCceeEeecc-CCCCcccc
Q psy12044 318 KKSELLIYNSNIDDNGTFVCVAEN-QAGSTSSN 349 (767)
Q Consensus 318 ~~s~L~I~nvs~sD~GtY~CvA~N-~~G~s~~s 349 (767)
....|.|.++..+|.|.|.|.+.+ ..|.....
T Consensus 91 ~~~sL~I~~v~~~D~G~Y~C~v~~~~~g~~~~~ 123 (128)
T 3r0n_A 91 QDATLALHGLTVEDEGNYTCEFATFPKGSVRGM 123 (128)
T ss_dssp SBCCEEECSCCGGGCEEEEEEEEEETTEEEEEE
T ss_pred CCeEEEEccCCchhCeEEEEEEEeCCCCCcccE
Confidence 245899999999999999997654 34444333
No 441
>1q9r_B S25-2 FAB (IGG1K) heavy chain; antigen-binding fragment, anti-carbohydrate, anti-LPS, antibody, immunoglobulin, KDO, complex, immune system; HET: KDA KDO; 1.45A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1q9l_B 1q9k_B* 1q9q_B* 1q9v_B* 2r1w_B* 2r1x_B* 2r1y_B* 2r2b_B* 2r2e_B* 2r2h_B* 3bpc_B* 3sy0_B* 3t4y_B* 3t65_B* 2r23_B* 1q9t_B* 3t77_B* 3okl_B* 3okk_B* 3okm_B ...
Probab=96.10 E-value=0.0017 Score=64.37 Aligned_cols=73 Identities=22% Similarity=0.264 Sum_probs=52.2
Q ss_pred eccccccccccccccc-CCC-cEEEeecCeeccCCCcccccccceeecccCcceeeeEEEEeeeccCCCCceeEeeccCC
Q psy12044 266 IQEGKNVSLLCKVSAI-PEA-KITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCVAENQA 343 (767)
Q Consensus 266 v~~G~~vsL~C~a~g~-P~p-~itW~~~g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~GtY~CvA~N~~ 343 (767)
+..|..+.|.|.+.+. |.| .+.|.+++..+..... ......+.....+.|.|..+...| |.|+|.|.|..
T Consensus 139 ~~~g~~v~L~C~~~g~~P~p~~v~W~~~g~~~~~~~~-------~~~~~~~~~~~~s~L~i~~~~~~d-g~y~C~a~n~~ 210 (222)
T 1q9r_B 139 AQTNSMVTLGCLVKGYFPEPVTVTWNSGSLSSGVHTF-------PAVLQSDLYTLSSSVTVPSSTWPS-ETVTCNVAHPA 210 (222)
T ss_dssp CCCSSEEEEEEEEEEEBSSCCEEEEGGGTBCTTEEEE-------EEEEETTEEEEEEEEEEETTTTTT-SCCEEEEEEGG
T ss_pred ccCCCcEEEEEEEccEECCCCEEEEecCCeEcceEec-------cccccCCcEEEEEEEEECchhcCC-CeEEEEEEccC
Confidence 4578999999999986 888 9999998765422100 011122333445678998888889 99999999988
Q ss_pred CCc
Q psy12044 344 GST 346 (767)
Q Consensus 344 G~s 346 (767)
|..
T Consensus 211 ~~~ 213 (222)
T 1q9r_B 211 SST 213 (222)
T ss_dssp GTE
T ss_pred CCC
Confidence 764
No 442
>1mqk_L Antibody 7E2 FV fragment, light chain; membrane protein, cytochrome C oxidase, high- resolution structure, immune system; 1.28A {Mus musculus} SCOP: b.1.1.1 PDB: 1ar1_D 3ehb_D* 3hb3_D* 1qle_L* 1f6l_L 3iy2_A 1vfa_A 1dvf_A 1kir_A 1g7i_A 1g7j_A 1a2y_A 1kip_A 1kiq_A 1vfb_A 1g7h_A 1a7o_L 1g7l_A 1g7m_A 1a7n_L ...
Probab=96.10 E-value=0.0059 Score=54.93 Aligned_cols=80 Identities=15% Similarity=0.223 Sum_probs=52.1
Q ss_pred ccceeecccccccccccccccCCCcEEEeecC--ee---cc-CCCccccc-ccceeecccCcceeeeEEEEeeeccCCCC
Q psy12044 261 TFYLEIQEGKNVSLLCKVSAIPEAKITWLFDG--VP---IQ-NESMSASE-SHAVYSTEEGTEIKKSELLIYNSNIDDNG 333 (767)
Q Consensus 261 ~~~~~v~~G~~vsL~C~a~g~P~p~itW~~~g--~~---l~-~~s~~~~~-~~~~~~~~~g~~~~~s~L~I~nvs~sD~G 333 (767)
+..+.+.+|+.++|.|.+.+.+.+.+.|++.. .. +. ........ ..++... .......|.|.++..+|.|
T Consensus 8 p~~~~v~~G~~v~L~C~~~~~~~~~v~W~r~~~g~~~~~li~~~~~~~~~~~~R~~~~---~~~~~~~L~I~~v~~~DsG 84 (120)
T 1mqk_L 8 PVSLSASVGETVTITCRASENIYSYLAWYQQKQGKSPQFLVYNAKTLGEGVPSRFSGS---GSGTQFSLKINSLLPEDFG 84 (120)
T ss_dssp CSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEE---EETTEEEEEESSCCGGGCE
T ss_pred CCeEEEcCCCcEEEEEEeCCCCCceEEEEEECCCCCCEEEEEeCCcCCCCCCceEEEe---ccCCEEEEEECCCCHHHCE
Confidence 34567889999999999998888899999842 21 11 10000000 1111111 0123467999999999999
Q ss_pred ceeEeeccCC
Q psy12044 334 TFVCVAENQA 343 (767)
Q Consensus 334 tY~CvA~N~~ 343 (767)
.|.|.+.+..
T Consensus 85 ~Y~C~~~~~~ 94 (120)
T 1mqk_L 85 SYYCQHHYGT 94 (120)
T ss_dssp EEEEEECSSS
T ss_pred EEEEEEEeCC
Confidence 9999998753
No 443
>1i8k_A Epidermal growth factor receptor antibody MR1SCFV light chain; antibody-peptide complex, immunoglobulin fold, type II' beta turn., immune system; 1.80A {Mus musculus} SCOP: b.1.1.1 PDB: 1i8i_A
Probab=96.02 E-value=0.0057 Score=53.57 Aligned_cols=79 Identities=15% Similarity=0.230 Sum_probs=51.2
Q ss_pred ccceeecccccccccccccccCCCcEEEeecC--e---ecc-CCCccccc-ccceeecccCcceeeeEEEEeeeccCCCC
Q psy12044 261 TFYLEIQEGKNVSLLCKVSAIPEAKITWLFDG--V---PIQ-NESMSASE-SHAVYSTEEGTEIKKSELLIYNSNIDDNG 333 (767)
Q Consensus 261 ~~~~~v~~G~~vsL~C~a~g~P~p~itW~~~g--~---~l~-~~s~~~~~-~~~~~~~~~g~~~~~s~L~I~nvs~sD~G 333 (767)
+..+.+.+|+.++|.|.+.+.+.+.+.|.+.. . .+. ........ ..++... .......|.|.++..+|.|
T Consensus 8 p~~~~~~~G~~v~L~C~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~r~~~~---~~~~~~~L~I~~v~~~DsG 84 (107)
T 1i8k_A 8 PASLSVATGEKVTIRCMTSTDIDDDMNWYQQKPGEPPKFLISEGNTLRPGVPSRFSSS---GTGTDFVFTIENTLSEDVG 84 (107)
T ss_dssp CSEEECCTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEE---EETTEEEEEESSCCGGGCE
T ss_pred CCeEEecCCCCEEEEEEECCCCCCcEEEEEECCCCCCEEEEEecCccCCCCCCCEEEE---ccCCEEEEEECCCCHHHCE
Confidence 34567889999999999988888899998842 1 111 10000000 1111111 1123457999999999999
Q ss_pred ceeEeeccC
Q psy12044 334 TFVCVAENQ 342 (767)
Q Consensus 334 tY~CvA~N~ 342 (767)
.|.|.+.+.
T Consensus 85 ~Y~C~~~~~ 93 (107)
T 1i8k_A 85 DYYCLQSFN 93 (107)
T ss_dssp EEEEEECSS
T ss_pred EEEEEEeeC
Confidence 999999875
No 444
>2rcj_C Light chain; immunoglobulin M, polymeric antibodies, immunology, X-RAY solution scattering, constrained modelling, immune system; NMR {Homo sapiens}
Probab=96.02 E-value=0.0052 Score=69.35 Aligned_cols=82 Identities=15% Similarity=0.308 Sum_probs=58.6
Q ss_pred eeccccccccccccccc-CCC-cEEEeecCeeccCCCcccccccceeecccCcceeeeEEEEeeeccCCCCceeEeeccC
Q psy12044 265 EIQEGKNVSLLCKVSAI-PEA-KITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCVAENQ 342 (767)
Q Consensus 265 ~v~~G~~vsL~C~a~g~-P~p-~itW~~~g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~GtY~CvA~N~ 342 (767)
.+..|..+.|.|.+.+. |.| .++|.+++..+...... ......+.....+.|.|.++...| |.|.|.|.|.
T Consensus 230 ~~~~G~~~~l~C~~~g~~P~p~~v~W~k~g~~~~~~~~~------~~~~~~g~~~~~s~L~i~~~~~~d-G~Y~C~a~n~ 302 (523)
T 2rcj_C 230 KSTSGGTAALGCLVKDYFPQPVTVSWNSGALTSGVHTFP------AVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHK 302 (523)
T ss_pred ccccCCceEEEEEEeceeCCCeEEEEecCCcccceEeCC------cEecCCCcEEEEEEEEechhhcCC-ceEEEEEEeC
Confidence 45689999999999887 777 89999988654221110 011122333446789999999999 9999999999
Q ss_pred CCCcccceEEE
Q psy12044 343 AGSTSSNYTIR 353 (767)
Q Consensus 343 ~G~s~~s~sL~ 353 (767)
.|.......+.
T Consensus 303 ~g~~~~~~~l~ 313 (523)
T 2rcj_C 303 PSNTKVDKRVE 313 (523)
T ss_pred CCCcceEEecC
Confidence 99865544443
No 445
>1dr9_A B7-1 (CD80), T lymphocyte activation antigen; IG superfamily, immune system; HET: NAG; 3.00A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1i8l_A*
Probab=96.00 E-value=0.006 Score=59.13 Aligned_cols=80 Identities=13% Similarity=0.195 Sum_probs=53.7
Q ss_pred eeeccccccccccccc----ccCCCcEEEeecCeeccCCCccc-----ccccceeecccCcceeeeEEEEeeeccCCCCc
Q psy12044 264 LEIQEGKNVSLLCKVS----AIPEAKITWLFDGVPIQNESMSA-----SESHAVYSTEEGTEIKKSELLIYNSNIDDNGT 334 (767)
Q Consensus 264 ~~v~~G~~vsL~C~a~----g~P~p~itW~~~g~~l~~~s~~~-----~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~Gt 334 (767)
+.+..|+.+.|.|.+. +.+.+.+.|.+++..+....... ....+..+. ......|.|.++..+|.|.
T Consensus 4 v~v~~G~~v~L~C~~~~~~~~~~~~~~~W~~~~~~i~~~~~~~~~~~~~~~~r~~~~----~~~~~~L~I~~v~~~D~G~ 79 (201)
T 1dr9_A 4 VTKEVKEVATLSCGHNVSVEELAQTRIYWQKEKKMVLTMMSGDMNIWPEYKNRTIFD----ITNNLSIVILALRPSDEGT 79 (201)
T ss_dssp EEEETTSCEEECCSCCCCTTHHHHCEEEEEETTEEEEEEETTEEEECHHHHTTEEEE----STTTTEEEECSCCGGGCEE
T ss_pred EEEEeCCCEEEecccCCCcccccccEEEEEeCCcEEEEEeCCceeecCcccceeEEc----cCCCcEEEEecccchhCeE
Confidence 5677899999999985 45678999999876553111000 000001110 1124579999999999999
Q ss_pred eeEeeccCCCCcc
Q psy12044 335 FVCVAENQAGSTS 347 (767)
Q Consensus 335 Y~CvA~N~~G~s~ 347 (767)
|.|.+.|..|...
T Consensus 80 Y~C~~~~~~g~~~ 92 (201)
T 1dr9_A 80 YECVVLKYEKDAF 92 (201)
T ss_dssp EEEEEEECCTTSC
T ss_pred EEEEEEcCCCCcc
Confidence 9999999887654
No 446
>1lk3_L 9D7 light chain; antigen-antibody complex, immune system; 1.91A {Rattus norvegicus} SCOP: b.1.1.1 b.1.1.2 PDB: 1fn4_A 1c5d_L 1bfo_A 3b9k_L*
Probab=95.99 E-value=0.011 Score=57.73 Aligned_cols=92 Identities=17% Similarity=0.225 Sum_probs=57.8
Q ss_pred ccceeecccccccccccccccCCCcEEEeec--Ceec---cC-CCccccc-ccceeecccCcceeeeEEEEeeeccCCCC
Q psy12044 261 TFYLEIQEGKNVSLLCKVSAIPEAKITWLFD--GVPI---QN-ESMSASE-SHAVYSTEEGTEIKKSELLIYNSNIDDNG 333 (767)
Q Consensus 261 ~~~~~v~~G~~vsL~C~a~g~P~p~itW~~~--g~~l---~~-~s~~~~~-~~~~~~~~~g~~~~~s~L~I~nvs~sD~G 333 (767)
+....+.+|+.+.|.|.+.+.+.+.+.|+++ +..+ .. ....... ...+.... ......|.|.++..+|.|
T Consensus 7 p~~~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~g~~~~~~~~~~~~~~~~~~~r~~~~~---~~~~~~L~I~~v~~~D~G 83 (210)
T 1lk3_L 7 PPALTVSPGEKLTISCKASESVTSRMHWYQQKPGQQPKLLIYKASNLASGVPARFSGSG---SGTDFTLTIDPVEADDTA 83 (210)
T ss_dssp CSEEEECTTSCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEE---ETTEEEEEESSCCGGGCE
T ss_pred CCcEEEcCCCCEEEEeeCCCccCCCEEEEEECCCCCeEEEEEccccccCCccccEEEEe---cCCEEEEEECCCCHHHCe
Confidence 4456788999999999999999899999873 2211 00 0000000 01111111 112458999999999999
Q ss_pred ceeEeeccCCCCccc-ceEEEEE
Q psy12044 334 TFVCVAENQAGSTSS-NYTIRIV 355 (767)
Q Consensus 334 tY~CvA~N~~G~s~~-s~sL~V~ 355 (767)
.|.|.+.|..+.... ...+.|.
T Consensus 84 ~Y~C~~~~~~~~~~~~~~~l~V~ 106 (210)
T 1lk3_L 84 IYFCQQSWNGPLTFGAGTKLELK 106 (210)
T ss_dssp EEEEEECSSSSCEECCCEEEEEC
T ss_pred EEEEEEEcCCCceeCCCEEEEEc
Confidence 999999998764332 2344443
No 447
>2qsq_A Carcinoembryonic antigen-related cell adhesion MO; glycoprotein, GPI-anchor, immunoglobulin DOMA lipoprotein, membrane; 1.95A {Homo sapiens} PDB: 2qst_A 2ver_N* 2gk2_A
Probab=95.97 E-value=0.007 Score=53.95 Aligned_cols=85 Identities=19% Similarity=0.156 Sum_probs=52.4
Q ss_pred eeecccccccccccccccCCCcEEEeecCeeccCCCccc------------ccccceeecccCcceeeeEEEEeeeccCC
Q psy12044 264 LEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSA------------SESHAVYSTEEGTEIKKSELLIYNSNIDD 331 (767)
Q Consensus 264 ~~v~~G~~vsL~C~a~g~P~p~itW~~~g~~l~~~s~~~------------~~~~~~~~~~~g~~~~~s~L~I~nvs~sD 331 (767)
..+.+|+.+.|.|.......+.+.|.+.........+.. ....+... ..+++|.|.+++.+|
T Consensus 10 ~~~~~G~~v~L~~~~~p~~~~~i~W~kg~~~~~~~~I~~y~~~~~~~~~~~~~~gR~~~------~~ngSL~I~nvt~~D 83 (111)
T 2qsq_A 10 FNVAEGKEVLLLVHNLPQHLFGYSWYKGERVDGNRQIIGYVIGTQQATPGPAYSGREII------YPNASLLIQNIIQND 83 (111)
T ss_dssp SEEETTSCEEEEEESCCSSEEEEEEEESSSCCGGGEEEEEETTTTEEEECTTCCSCEEE------CTTSCEEECSCCGGG
T ss_pred ceeccCCCEEEEEeCCCCCceEEEEEeCCCCCCCcEEEEEECCCcceecCcccCCcEEE------ecCCcEEEccCcccC
Confidence 467799999999975444455799987543221111100 00111111 124589999999999
Q ss_pred CCceeEeeccCCCC-cccceEEEE
Q psy12044 332 NGTFVCVAENQAGS-TSSNYTIRI 354 (767)
Q Consensus 332 ~GtY~CvA~N~~G~-s~~s~sL~V 354 (767)
.|.|+|.+.+..+. ....+.+.|
T Consensus 84 ~G~Ytc~v~~~~~~~~~~~~~L~V 107 (111)
T 2qsq_A 84 AGFYTLHVIKSDLVNEEATGQFRV 107 (111)
T ss_dssp CEEEEEEEEETTSCCEEEEEEEEE
T ss_pred CeEEEEEEEeCCCcEEEEEEEEEE
Confidence 99999999988653 344444444
No 448
>2ywz_A NEW antigen receptor variable domain; IG VNAR, immune system; 2.21A {Orectolobus maculatus} PDB: 2ywy_A
Probab=95.95 E-value=0.0037 Score=55.27 Aligned_cols=77 Identities=18% Similarity=0.285 Sum_probs=49.8
Q ss_pred ccceeeccccccccccccccc--CCCcEEEeec--CeeccCCCcccccccceeecccCcceeeeEEEEeeeccCCCCcee
Q psy12044 261 TFYLEIQEGKNVSLLCKVSAI--PEAKITWLFD--GVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFV 336 (767)
Q Consensus 261 ~~~~~v~~G~~vsL~C~a~g~--P~p~itW~~~--g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~GtY~ 336 (767)
+..+.+.+|+.++|.|.+.+. +.+.+.|++. +..... ..... .++.... ........|.|.++..+|.|.|.
T Consensus 7 p~~~~~~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~--~~~~~-~r~~~~~-~~~~~~~~L~I~~v~~~DsG~Y~ 82 (111)
T 2ywz_A 7 PRTITKETGESLTIKCVLKDHSCGLSSTTWYRTQLGSTNEK--TISIG-GRYDETV-DKGSKSFSLRISDLRVEDSGTYK 82 (111)
T ss_dssp CSEEEECTTCCEEEEEEEESCSSCCCEEEEEEEETTCCCCE--ECCSB-TTEEEEE-ETTTTEEEEEECSCCGGGCEEEE
T ss_pred CCcEEEccCCCEEEEeEECCCCCCCCEEEEEEeCCCCCceE--eeEeC-CCEEEEE-eCCCCEEEEEECCCChhcCEEEE
Confidence 345678899999999998765 5678999884 221100 00000 1111111 01123568999999999999999
Q ss_pred Eeecc
Q psy12044 337 CVAEN 341 (767)
Q Consensus 337 CvA~N 341 (767)
|.+.+
T Consensus 83 C~~~~ 87 (111)
T 2ywz_A 83 CQADY 87 (111)
T ss_dssp EEEEE
T ss_pred EEEEc
Confidence 99987
No 449
>3s97_C Contactin-1; carbonic anhdyrase like immunoglobulin, cell adhesion comple adhesion; HET: NAG; 2.30A {Homo sapiens}
Probab=95.95 E-value=0.0049 Score=59.20 Aligned_cols=76 Identities=22% Similarity=0.464 Sum_probs=55.3
Q ss_pred cceeeccccccccccc-ccccCC-CcEEEeecCeeccCCCcccccccceeecccCcceeeeEEEEeeeccCCCCceeEee
Q psy12044 262 FYLEIQEGKNVSLLCK-VSAIPE-AKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCVA 339 (767)
Q Consensus 262 ~~~~v~~G~~vsL~C~-a~g~P~-p~itW~~~g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~GtY~CvA 339 (767)
....+.+|+.+.|.|. +.+.|. +.+.|.+++..+..... .. .... ...+.|.|.++..+|.|.|.|.+
T Consensus 16 ~~~~v~~G~~v~L~C~~~~~~p~~~~v~W~~~~~~~~~~~~----~~-~~~~-----~~~~~L~i~~v~~~d~G~Y~C~~ 85 (201)
T 3s97_C 16 PEVRVKEGKGMVLLCDPPYHFPDDLSYRWLLNEFPVFITMD----KR-RFVS-----QTNGNLYIANVEASDKGNYSCFV 85 (201)
T ss_dssp CCEEEETTCCEEECCCCCSEESSCCEEEEEESSTTCBCCCS----SS-EEEC-----TTTCCEEESSCCGGGCEEEEEEE
T ss_pred ceEEEECCCCEEEeccccccCCCceEEEEEECCceeeeeeC----CC-eEEE-----cCCCeEEECcCCcccCeEEEEEE
Confidence 4567889999999999 889998 99999998765531110 00 1111 11356999999999999999999
Q ss_pred ccCCCCcc
Q psy12044 340 ENQAGSTS 347 (767)
Q Consensus 340 ~N~~G~s~ 347 (767)
.+..+...
T Consensus 86 ~~~~~~~~ 93 (201)
T 3s97_C 86 SSPSITKS 93 (201)
T ss_dssp EEGGGTEE
T ss_pred EecCCCcc
Confidence 98765443
No 450
>2ocw_A Polymeric-immunoglobulin receptor; SC, secretory, antibody, immunity, immune system; NMR {Homo sapiens} PDB: 3chn_S 3cm9_S 3chn_J 3cm9_J
Probab=95.94 E-value=0.011 Score=67.37 Aligned_cols=102 Identities=14% Similarity=0.244 Sum_probs=68.0
Q ss_pred CCCCCCccceeecccccccccccccccC-CCcEEEeecCeecc----CC-C-cccccccceeecccCcceeeeEEEEeee
Q psy12044 255 PQITPSTFYLEIQEGKNVSLLCKVSAIP-EAKITWLFDGVPIQ----NE-S-MSASESHAVYSTEEGTEIKKSELLIYNS 327 (767)
Q Consensus 255 P~i~~~~~~~~v~~G~~vsL~C~a~g~P-~p~itW~~~g~~l~----~~-s-~~~~~~~~~~~~~~g~~~~~s~L~I~nv 327 (767)
|.+........+.+|+.+.|.|.+.+.+ .+.+.|++++.... .. . ........+.+...+.......|.|.++
T Consensus 113 p~~~~~~~~~~v~~G~~v~l~C~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~L~I~~v 192 (585)
T 2ocw_A 113 PGLLNDTKVYTVDLGRTVTINCPFKTENAQKRKSLYKQIGLYPVLVIDSSGYVNPNYTGRIRLDIQGTGQLLFSVVINQL 192 (585)
T ss_pred ccccCCCccEEEEcCCCEEEEEEecCCCCCccEEEEECCCCCceEEecCCcccCccccCcEEEEeccCCCcEEEEEEccC
Confidence 3344445566788999999999998654 57899999764321 10 0 0000011222333333334458999999
Q ss_pred ccCCCCceeEeeccCCCCcccceEEEEEe
Q psy12044 328 NIDDNGTFVCVAENQAGSTSSNYTIRIVL 356 (767)
Q Consensus 328 s~sD~GtY~CvA~N~~G~s~~s~sL~V~~ 356 (767)
...|.|.|.|.+.|..|.....+.+.|..
T Consensus 193 ~~~D~G~Y~C~a~n~~g~~~~~~~l~V~~ 221 (585)
T 2ocw_A 193 RLSDAGQYLCQAGDDSNSNKKNADLQVLK 221 (585)
T ss_pred ChhHCeEEEEEeccCCccccceEEEEEcc
Confidence 99999999999999999887777777754
No 451
>4fmk_A Poliovirus receptor-related protein 2; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; HET: NAG BMA MAN FUC; 2.56A {Mus musculus} PDB: 4fn0_A* 4fs0_A*
Probab=95.94 E-value=0.0071 Score=58.76 Aligned_cols=80 Identities=15% Similarity=0.168 Sum_probs=52.4
Q ss_pred ccccccccc-cccccCCCcEEEeecCeeccCCCcccccccceeecccCcceeeeEEEEeeeccCCCCceeEeeccCCCCc
Q psy12044 268 EGKNVSLLC-KVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCVAENQAGST 346 (767)
Q Consensus 268 ~G~~vsL~C-~a~g~P~p~itW~~~g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~GtY~CvA~N~~G~s 346 (767)
.+....+.| .+.+.|.+.+.|+.++........ ......+.....+.|.|..+...|.|.|+|.|.|..|..
T Consensus 135 ~~~~~~~~c~~~~~~P~~~~~w~~~~~~~~~~~~-------~~~~~~~~~~~~s~L~i~~~~~~d~g~YtC~a~N~~~~~ 207 (225)
T 4fmk_A 135 PQSVAVARCVSTGGRPPARITWISSLGGEAKDTQ-------EPGIQAGTVTIISRYSLVPVGRADGVKVTCRVEHESFEE 207 (225)
T ss_dssp SSCEEEEEEEEEEEBSCCEEEEECSSCCEEEEEE-------EECSSTTCEEEEEEEEECCCGGGTTCEEEEEEECTTCSS
T ss_pred ceeeeeeeeeecCCCCCCEEEEEECCccccCCcc-------eEEecCCCEEEEEEEEEeeCCHHHCCEEEEEEEcCCCCe
Confidence 344455555 456678889999886544322111 112223334456789999999999999999999998877
Q ss_pred ccceEEEE
Q psy12044 347 SSNYTIRI 354 (767)
Q Consensus 347 ~~s~sL~V 354 (767)
.....+.+
T Consensus 208 ~~~~~v~l 215 (225)
T 4fmk_A 208 PILLPVTL 215 (225)
T ss_dssp CEEEEEEC
T ss_pred EEEEEEEE
Confidence 65544443
No 452
>3moq_A NEW antigen receptor variable domain, P3(40) PEPT amyloid beta A4 protein; AB-ignar, AB-12Y-2, glycoprotein, membran protease inhibitor; 2.05A {Orectolobus maculatus} PDB: 2z8w_C 2z8v_C 1ves_A 1ver_A
Probab=95.94 E-value=0.0036 Score=57.25 Aligned_cols=80 Identities=16% Similarity=0.185 Sum_probs=51.3
Q ss_pred ccceeeccccccccccccccc--CCCcEEEeec--CeeccCCCcccccccceeecccCcceeeeEEEEeeeccCCCCcee
Q psy12044 261 TFYLEIQEGKNVSLLCKVSAI--PEAKITWLFD--GVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFV 336 (767)
Q Consensus 261 ~~~~~v~~G~~vsL~C~a~g~--P~p~itW~~~--g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~GtY~ 336 (767)
+..+.+.+|+.++|.|...+. +.+.+.|++. +..... ..... .++..... .......|.|.+++.+|.|.|.
T Consensus 7 p~~v~v~~G~svtL~C~~s~~~~~~~~v~Wyrq~~g~~~~~--li~~~-~R~~~~~~-~~~~~~sL~I~~v~~~DsG~Y~ 82 (126)
T 3moq_A 7 PRTATKETGESLTINCVLRDASFELKDTGWYRTKLGSTNEQ--SISIG-GRYVETVN-KGSKSFSLRISDLRVEDSGTYK 82 (126)
T ss_dssp CSEEEEETTCCEEEEEEEESCSSCCCEEEEEEEETTCCCCE--ECCCB-TTEEEEEE-TTTTEEEEEECSCCGGGCEEEE
T ss_pred CceEEEeCCCCEEEEEEeecCccCCceEEEEEeCCCCCceE--EEEeC-CcEEEEEe-CCCCEEEEEECcCChHhCEEEE
Confidence 445678899999999998765 5678999883 221110 00000 11111111 1123568999999999999999
Q ss_pred EeeccCCC
Q psy12044 337 CVAENQAG 344 (767)
Q Consensus 337 CvA~N~~G 344 (767)
|.+.+..+
T Consensus 83 C~~~~~~~ 90 (126)
T 3moq_A 83 CQAFYVFF 90 (126)
T ss_dssp EEEEEEEE
T ss_pred EEEEEcCC
Confidence 99987654
No 453
>4dzb_B Vbeta2 (MAIT T cell receptor); immune system; 1.70A {Homo sapiens} PDB: 1ymm_E* 3o4l_E* 3o6f_D 3t0e_D 1ktk_E 3mfg_B 2ij0_E
Probab=95.91 E-value=0.0068 Score=60.89 Aligned_cols=82 Identities=11% Similarity=0.285 Sum_probs=52.4
Q ss_pred ccceeecccccccccccccccCCCcEEEeecC--ee---cc-----CCC-ccccc-ccceeecccCcceeeeEEEEeeec
Q psy12044 261 TFYLEIQEGKNVSLLCKVSAIPEAKITWLFDG--VP---IQ-----NES-MSASE-SHAVYSTEEGTEIKKSELLIYNSN 328 (767)
Q Consensus 261 ~~~~~v~~G~~vsL~C~a~g~P~p~itW~~~g--~~---l~-----~~s-~~~~~-~~~~~~~~~g~~~~~s~L~I~nvs 328 (767)
+..+.+.+|+.+.|.|.+.+.+.+.+.|++.. .. +. +.. ..... ..++..... ......|.|.++.
T Consensus 8 p~~~~v~~G~~v~L~C~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~--~~~~~~L~I~~v~ 85 (246)
T 4dzb_B 8 PSWVISKSGTSVKIECRSLDFQATTMFWYRQFPKQSLMLMATSNEGSKATYEQGVEKDKFLINHA--SLTLSTLTVTSAH 85 (246)
T ss_dssp CSEEEEETTSCEEEEEEESSSCCCSEEEEEECTTSCCEEEEEECTTSCCEECTTCCGGGEEEEEE--ETTEEEEEECSCC
T ss_pred CcEEEEeCCCcEEEEeEecCCCceEEEEEEECCCCCcEEEEEEccCCCceecCcccCCcEEEEec--CCCEEEEEECCCC
Confidence 34567889999999999999999999998721 11 10 000 00000 011111110 1234589999999
Q ss_pred cCCCCceeEeeccCCC
Q psy12044 329 IDDNGTFVCVAENQAG 344 (767)
Q Consensus 329 ~sD~GtY~CvA~N~~G 344 (767)
.+|.|.|.|.+.+..+
T Consensus 86 ~~D~G~Y~C~~~~~~~ 101 (246)
T 4dzb_B 86 PEDSSFYICSARTSGD 101 (246)
T ss_dssp GGGCEEEEEEECCSSG
T ss_pred HHHCEEEEEEEecCCC
Confidence 9999999999987643
No 454
>3tf7_C 42F3 MUT7 SCFV (42F3 alpha chain, linker, 42F3 BE; IG and MHC, antigen recognition, TCR-PMHC, membrane receptor system; 2.75A {Mus musculus}
Probab=95.90 E-value=0.01 Score=60.34 Aligned_cols=85 Identities=12% Similarity=0.141 Sum_probs=54.5
Q ss_pred CCccceeecccccccccccccccCCCcEEEeecC--eec---cCC---CcccccccceeecccCcceeeeEEEEeeeccC
Q psy12044 259 PSTFYLEIQEGKNVSLLCKVSAIPEAKITWLFDG--VPI---QNE---SMSASESHAVYSTEEGTEIKKSELLIYNSNID 330 (767)
Q Consensus 259 ~~~~~~~v~~G~~vsL~C~a~g~P~p~itW~~~g--~~l---~~~---s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~s 330 (767)
..+..+.+.+|+.++|.|.+.+.+.+.+.|++.. ... ... .........+.... ........|.|.++..+
T Consensus 8 q~p~~~~v~~G~~v~L~C~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~-~~~~~~~sL~I~~v~~~ 86 (256)
T 3tf7_C 8 QPDARVTVSEGASLQLRCKYSYSATPYLFWYVQYPRQGPQMLLKYYSGDPVVQGVNGFEAEF-SKSDSSFHLRKASVHRS 86 (256)
T ss_dssp CSCSEEEEETTSCEEECCEEECSSCCEEEEEEECTTSCCEEEEEECSSCSEEECSTTCEEEE-ETTTTEEEEEESSCCGG
T ss_pred ecCceEEecCCCeEEEEEEeCCCCCceEEEEEECCCCCeEEEEEEccCCcccccCCCeEEEE-cCCCCEEEEEECCCCcc
Confidence 3445678889999999999999999999998732 111 000 00000000111100 01123567999999999
Q ss_pred CCCceeEeeccCCC
Q psy12044 331 DNGTFVCVAENQAG 344 (767)
Q Consensus 331 D~GtY~CvA~N~~G 344 (767)
|.|.|.|.+.|..+
T Consensus 87 DsG~Y~C~~~~~~~ 100 (256)
T 3tf7_C 87 DSAVYFCAVSAKGT 100 (256)
T ss_dssp GCSEEEEEEECTTC
T ss_pred cCEEEEEEEecCCC
Confidence 99999999998765
No 455
>3sob_L Antibody light chain; beta propeller, protein binding-immune system complex; 1.90A {Homo sapiens} PDB: 1pkq_A 3u1s_L*
Probab=95.89 E-value=0.012 Score=58.36 Aligned_cols=92 Identities=15% Similarity=0.182 Sum_probs=57.6
Q ss_pred ccceeecccccccccccccccCCCcEEEeecC--eec---cC-CC-cccccccceeecccCcceeeeEEEEeeeccCCCC
Q psy12044 261 TFYLEIQEGKNVSLLCKVSAIPEAKITWLFDG--VPI---QN-ES-MSASESHAVYSTEEGTEIKKSELLIYNSNIDDNG 333 (767)
Q Consensus 261 ~~~~~v~~G~~vsL~C~a~g~P~p~itW~~~g--~~l---~~-~s-~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~G 333 (767)
+....+.+|+.+.|.|.+.+.+.+.+.|++.. ... .. .. ........+... .......|.|.++..+|.|
T Consensus 31 p~~~~v~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~---~~~~~~~L~I~~v~~~D~G 107 (237)
T 3sob_L 31 PSSLSASVGDRVTITCRASQDVSTAVAWYQQKPGKAPKLLIYSASFLYSGVPSRFSGS---GSGTDFTLTISSLQPEDFA 107 (237)
T ss_dssp CSEEEEETTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEE---EETTEEEEEESSCCGGGCE
T ss_pred CCeEEEeCCCcEEEEEecCCCCCceEEEEEECCCCCCEEEEEeccccCCCCCCcEEEE---cCCCEEEEEECCCChhhCe
Confidence 44567889999999999999999999998732 111 00 00 000000111111 1123567999999999999
Q ss_pred ceeEeeccCCCCcc-cceEEEEE
Q psy12044 334 TFVCVAENQAGSTS-SNYTIRIV 355 (767)
Q Consensus 334 tY~CvA~N~~G~s~-~s~sL~V~ 355 (767)
.|.|.+.+..+... ....+.|.
T Consensus 108 ~Y~C~~~~~~~~~~~~~~~l~V~ 130 (237)
T 3sob_L 108 TYYCQQSYTTPPTFGQGTKVEIK 130 (237)
T ss_dssp EEEEEECSSSSCEECCCEEEEEE
T ss_pred EEEEeeccCCceEEcCcEEEEEe
Confidence 99999988765322 23445443
No 456
>2p1y_A Bispecific alpha/beta TCR; autoimmunity, immunoglobulin fold, diabody, immune system; 2.42A {Mus musculus} PDB: 1bwm_A
Probab=95.88 E-value=0.0045 Score=61.81 Aligned_cols=82 Identities=21% Similarity=0.206 Sum_probs=52.4
Q ss_pred ccceeecccccccccccccccCCCcEEEeecC--ee---ccCC-Cc-ccccccceeecccCcceeeeEEEEeeeccCCCC
Q psy12044 261 TFYLEIQEGKNVSLLCKVSAIPEAKITWLFDG--VP---IQNE-SM-SASESHAVYSTEEGTEIKKSELLIYNSNIDDNG 333 (767)
Q Consensus 261 ~~~~~v~~G~~vsL~C~a~g~P~p~itW~~~g--~~---l~~~-s~-~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~G 333 (767)
+....+.+|+.+.|.|.+.+.|.+.+.|.++. .. +... .. .......+.... ........|.|.++..+|.|
T Consensus 134 p~~~~v~~G~~v~L~C~~~~~p~~~i~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~-~~~~~~~~L~I~~v~~~D~G 212 (238)
T 2p1y_A 134 PQSLTVWEGETAILNCSYENSAFDYFPWYQQFPGEGPALLISILSVSDKKEDGRFTIFF-NKREKKLSLHIADSQPGDSA 212 (238)
T ss_dssp CSEEEEETTSCEEEEEECCCTTCCEEEEEEECTTSCCEEEEEEETTCSEEEETTEEEEE-ETTTTEEEEEETTCCGGGCE
T ss_pred CceEEEeCCCeEEEEEEEecCCCCcEEEEEECCCCCCEEEEEEccCCCcccCCceEEEe-cCCCCeEEEEEcCCCHHHCE
Confidence 34456789999999999999999999999853 11 1000 00 000000111110 01122468999999999999
Q ss_pred ceeEeeccCC
Q psy12044 334 TFVCVAENQA 343 (767)
Q Consensus 334 tY~CvA~N~~ 343 (767)
.|.|.+.|..
T Consensus 213 ~Y~C~a~n~~ 222 (238)
T 2p1y_A 213 TYFCAAIDTN 222 (238)
T ss_dssp EEEEEEEETT
T ss_pred EEEEEEeeCC
Confidence 9999999873
No 457
>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A
Probab=95.88 E-value=0.0087 Score=69.35 Aligned_cols=73 Identities=32% Similarity=0.513 Sum_probs=60.1
Q ss_pred eeecccccccccccccccCCCcEEEeecCeeccCCCcccccccceeecccCcceeeeEEEEeeeccCCCCceeEeeccCC
Q psy12044 264 LEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCVAENQA 343 (767)
Q Consensus 264 ~~v~~G~~vsL~C~a~g~P~p~itW~~~g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~GtY~CvA~N~~ 343 (767)
..+..|..+.|.|.+.+.|.+.+.|.+++..+.. ...|.|.++...|.|.|.|.|.|..
T Consensus 391 ~~~~~g~~~~l~C~~~g~p~~~i~W~~~g~~~~~---------------------~~~L~i~~~~~~d~G~Y~C~a~n~~ 449 (642)
T 1e07_A 391 TYYRPGVNLSLSCHAASNPPAQYSWLIDGNIQQH---------------------TQELFISNITEKNSGLYTCQANNSA 449 (642)
T ss_pred eEecCCCcEEEEEEcCccCCCeEEEEECCEEcCC---------------------CceEEEccCChhhCeEEEEEEEcCC
Confidence 4567899999999999999999999998866532 1358999999999999999999999
Q ss_pred CCcccceEEEEEee
Q psy12044 344 GSTSSNYTIRIVLK 357 (767)
Q Consensus 344 G~s~~s~sL~V~~~ 357 (767)
|.......+.+.+.
T Consensus 450 g~~~~s~~~~v~v~ 463 (642)
T 1e07_A 450 SGHSRTTVKTITVS 463 (642)
T ss_pred CCCcccceEEEEEe
Confidence 88777655555554
No 458
>2ptt_A CD48 antigen; CD244, CD48, NK cell receptor, X-RAY, immune system; 1.63A {Mus musculus} PDB: 2ptv_A
Probab=95.88 E-value=0.014 Score=51.06 Aligned_cols=76 Identities=26% Similarity=0.309 Sum_probs=49.5
Q ss_pred ceeecccccccccccc-cccCCCcEEEeecC-eeccCC----Cc--cccc-ccceeecccCcceeeeEEEEeeeccCCCC
Q psy12044 263 YLEIQEGKNVSLLCKV-SAIPEAKITWLFDG-VPIQNE----SM--SASE-SHAVYSTEEGTEIKKSELLIYNSNIDDNG 333 (767)
Q Consensus 263 ~~~v~~G~~vsL~C~a-~g~P~p~itW~~~g-~~l~~~----s~--~~~~-~~~~~~~~~g~~~~~s~L~I~nvs~sD~G 333 (767)
.+.+..|+.++|.|.. .+.+.+.+.|.+.. ..+... .. .... ..++... .....|.|.++..+|.|
T Consensus 12 ~v~~~~G~~v~L~C~~~~~~~~~~v~W~~~~~~~i~~~~~~~~~~~~~~~~~~R~~~~-----~~~~sL~I~~v~~~DsG 86 (110)
T 2ptt_A 12 DINAYTGSNVTLKIHKDPLGPYRRITWLHTKNQKILEYNYNSTKTIFESEFKGRVYLE-----ENNGALHISNVRKEDKG 86 (110)
T ss_dssp SEEEETTSCEEECSCSSCCCSCSEEEEEESTTBEEEEEETTSCEEECSSTTTTTEEEC-----TTTCCEEESSCCGGGCE
T ss_pred CEEEecCCcEEEeCCccCCCCcCEEEEEecCCccEEEEECCCCceeeccccCCcEEEe-----CCCccEEECCCCcccCe
Confidence 4677899999999998 66777899999832 211100 00 0000 0111111 13467999999999999
Q ss_pred ceeEeeccCC
Q psy12044 334 TFVCVAENQA 343 (767)
Q Consensus 334 tY~CvA~N~~ 343 (767)
.|.|.+.+..
T Consensus 87 ~Y~C~v~~~~ 96 (110)
T 2ptt_A 87 TYYMRVLRET 96 (110)
T ss_dssp EEEEEEESSS
T ss_pred EEEEEEEcCC
Confidence 9999997654
No 459
>2yz1_A Tyrosine-protein phosphatase non-receptor type substrate 1; beta-sandwich, structural genomics, NPPSFA; 1.40A {Mus musculus}
Probab=95.88 E-value=0.0075 Score=53.82 Aligned_cols=83 Identities=19% Similarity=0.285 Sum_probs=50.8
Q ss_pred Cccceeeccccccccccccccc-CCCcEEEeecCee----ccCCCc-ccccccceeecccCcceeeeEEEEeeeccCCCC
Q psy12044 260 STFYLEIQEGKNVSLLCKVSAI-PEAKITWLFDGVP----IQNESM-SASESHAVYSTEEGTEIKKSELLIYNSNIDDNG 333 (767)
Q Consensus 260 ~~~~~~v~~G~~vsL~C~a~g~-P~p~itW~~~g~~----l~~~s~-~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~G 333 (767)
.+..+.+.+|+.++|.|.+.+. +.+.+.|+++... +..... ........ ............|.|.++..+|.|
T Consensus 13 ~p~~~~~~~G~~v~L~C~~~~~~~~~~v~W~r~~~~~~~~i~~~~~~~~~r~~~~-~~~~~~~~~~~~L~I~~v~~~DsG 91 (120)
T 2yz1_A 13 PEKSVSVAAGDSTVLNCTLTSLLPVGPIKWYRGVGQSRLLIYSFTGEHFPRVTNV-SDATKRNNMDFSIRISNVTPEDAG 91 (120)
T ss_dssp CSSEEEECTTCCEEECCEESCCCSCCCEEEEESSSTTCEEEEEECEECTTTCCSE-EECCBSSTTBCCEEECSCCGGGCE
T ss_pred CCceEEEeCCCCEEEEeEECCCCCCcEEEEEcCCCCCcEEEEEcCCcccCcccce-eeccccCCCeEEEEECCCCHHHCE
Confidence 3445778899999999998765 5678999986421 110000 00000000 000001122357999999999999
Q ss_pred ceeEeeccCC
Q psy12044 334 TFVCVAENQA 343 (767)
Q Consensus 334 tY~CvA~N~~ 343 (767)
.|.|.+.+..
T Consensus 92 ~Y~C~~~~~~ 101 (120)
T 2yz1_A 92 TYYCVKFQKG 101 (120)
T ss_dssp EEEEEEEECC
T ss_pred EEEEEEEcCC
Confidence 9999998753
No 460
>2ghw_B Anti-SARS SCFV antibody, 80R; S protein, neutralizing antibody, virus/viral protein/antibiotic complex; 2.30A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1
Probab=95.87 E-value=0.0089 Score=60.06 Aligned_cols=79 Identities=15% Similarity=0.237 Sum_probs=52.3
Q ss_pred ceeecccccccccccccccCCCcEEEee--cCeeccCC----C-cccccccceeecccCcceeeeEEEEeeeccCCCCce
Q psy12044 263 YLEIQEGKNVSLLCKVSAIPEAKITWLF--DGVPIQNE----S-MSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTF 335 (767)
Q Consensus 263 ~~~v~~G~~vsL~C~a~g~P~p~itW~~--~g~~l~~~----s-~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~GtY 335 (767)
...+.+|+.++|.|.+.+.+.+.+.|++ ++..+... . ........+.... ......|.|.++..+|.|.|
T Consensus 144 ~~~v~~G~~v~L~C~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~---~~~~~~L~I~~v~~~D~G~Y 220 (247)
T 2ghw_B 144 TLSLSPGERATLSCRASQSVRSNLAWYQQKPGQAPRPLIYDASTRATGIPDRFSGSG---SGTDFTLTISRLEPEDFAVY 220 (247)
T ss_dssp EEEECTTSCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEC---SSSEEEEEECSCCGGGCEEE
T ss_pred EEEecCCCcEEEEEEeCCCccceEEEEEECCCCCcEEEEEEeccCCCccCCCEEEec---CCCeEEEEECcCCHHHCEEE
Confidence 4567899999999999999999999998 44322100 0 0000001111110 12346799999999999999
Q ss_pred eEeeccCCC
Q psy12044 336 VCVAENQAG 344 (767)
Q Consensus 336 ~CvA~N~~G 344 (767)
.|.+.|..+
T Consensus 221 ~C~a~~~~~ 229 (247)
T 2ghw_B 221 YCQQRSNWP 229 (247)
T ss_dssp EEEECSSSS
T ss_pred EEEEccCCC
Confidence 999998643
No 461
>3esu_F Antibody 14B7* light chain and antibody 14B7* heavy chain linked with A synthetic...; single-chain FV, monoclonal antibody, immunoglobulin; 1.30A {Mus musculus} PDB: 3et9_F 3esv_F 3etb_F 1h8n_A 1h8s_A* 1h8o_A*
Probab=95.87 E-value=0.0088 Score=60.21 Aligned_cols=84 Identities=20% Similarity=0.218 Sum_probs=54.6
Q ss_pred CCccceeecccccccccccccccCCCcEEEeecC--e---eccC-CCc-ccccccceeecccCcceeeeEEEEeeeccCC
Q psy12044 259 PSTFYLEIQEGKNVSLLCKVSAIPEAKITWLFDG--V---PIQN-ESM-SASESHAVYSTEEGTEIKKSELLIYNSNIDD 331 (767)
Q Consensus 259 ~~~~~~~v~~G~~vsL~C~a~g~P~p~itW~~~g--~---~l~~-~s~-~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD 331 (767)
..+..+.+.+|+.++|.|.+.+.+.+.+.|.+.. . .+.. ... .......+... .......|.|.++..+|
T Consensus 9 ~~p~~~~v~~G~~v~L~C~~~~~~~~~i~W~k~~~~~~~~~l~~~~~~~~~~~~~r~~~~---~~~~~~~L~I~~v~~~D 85 (250)
T 3esu_F 9 QSTSSLSASLGDRVTISCRASQDIRNYLNWYQQKPDGTVKLLIYYTSRLQSGVPSRFSGS---GSGTDYSLTISNLEQED 85 (250)
T ss_dssp CSCSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCEEEEEETTTEECTTCCTTEEEE---EETTEEEEEESSCCGGG
T ss_pred ecCCEEEeeCCCcEEEEEEecccCCceEEEEEECCCCCCEEEEEEeCCCCCCCCCCEEEe---CCCCEEEEEEccCChhh
Confidence 3445567889999999999999999999999842 1 1100 000 00000111110 11223579999999999
Q ss_pred CCceeEeeccCCCC
Q psy12044 332 NGTFVCVAENQAGS 345 (767)
Q Consensus 332 ~GtY~CvA~N~~G~ 345 (767)
.|.|.|.+.|..+.
T Consensus 86 ~G~Y~C~~~n~~~~ 99 (250)
T 3esu_F 86 IGTYFCQQGNTLPW 99 (250)
T ss_dssp CEEEEEEECSSSSC
T ss_pred CEEEEEEEeeCCCc
Confidence 99999999987654
No 462
>2jju_A Signal regulatory protein beta-1; immunoglobulin domain, immunoglobulin superfamily, immune system, transmembrane, paired receptor; 1.19A {Homo sapiens} PDB: 2jjv_A 2uv3_A* 2jjt_A* 2jjs_A* 2jjw_A
Probab=95.86 E-value=0.0077 Score=54.61 Aligned_cols=81 Identities=21% Similarity=0.346 Sum_probs=50.6
Q ss_pred ccceeeccccccccccccccc-CCCcEEEeecCee----ccCCCcccccccceeeccc--CcceeeeEEEEeeeccCCCC
Q psy12044 261 TFYLEIQEGKNVSLLCKVSAI-PEAKITWLFDGVP----IQNESMSASESHAVYSTEE--GTEIKKSELLIYNSNIDDNG 333 (767)
Q Consensus 261 ~~~~~v~~G~~vsL~C~a~g~-P~p~itW~~~g~~----l~~~s~~~~~~~~~~~~~~--g~~~~~s~L~I~nvs~sD~G 333 (767)
+..+.+.+|+.++|.|.+.+. +.+.+.|+++... +..... .....+..... ........|.|.++..+|.|
T Consensus 10 p~~~~v~~G~~vtL~C~~~~~~~~~~v~W~r~~~~~~~li~~~~~--~~~~r~~~~~~~~~~~~~~~~L~I~~v~~~DsG 87 (127)
T 2jju_A 10 EKSVSVAAGESATLRCAMTSLIPVGPIMWFRGAGAGRELIYNQKE--GHFPRVTTVSELTKRNNLDFSISISNITPADAG 87 (127)
T ss_dssp CSEEEEETTSCEEECCEESCCCSCCCEEEEECSSTTCEEEEESSS--SCCTTEEEC-------CCBCCEEECSCCGGGCE
T ss_pred CCeEEEeCCCCEEEEEEEeCCCCCCEEEEEecCCCCcEEEEECCC--CccCcEEeeEeeeecCCCEEEEEECCCCHHHCE
Confidence 345678899999999998775 5678999985421 111000 00001111100 01123568999999999999
Q ss_pred ceeEeeccCC
Q psy12044 334 TFVCVAENQA 343 (767)
Q Consensus 334 tY~CvA~N~~ 343 (767)
.|.|.+.+..
T Consensus 88 ~Y~C~~~~~~ 97 (127)
T 2jju_A 88 TYYCVKFRKG 97 (127)
T ss_dssp EEEEEEEECC
T ss_pred EEEEEEEcCC
Confidence 9999998753
No 463
>3tv3_L PGT128 light chain, IG lambda-2 chain C regions; FAB, HIV-1 neutralizing antibody, GP120, immune system; HET: PCA MAN GOL EPE; 1.29A {Homo sapiens} PDB: 3tyg_L* 3twc_L* 3tnm_L 2mcg_1 1mcw_M 1a8j_L 3mcg_1 1dcl_A 1mcb_A* 1mcc_A* 1mcd_A* 1mce_A* 1mcf_A* 1mch_A 1mci_A* 1mcj_A* 1mck_A 1mcl_A* 1mcn_A* 1mcq_A ...
Probab=95.86 E-value=0.0022 Score=62.86 Aligned_cols=78 Identities=12% Similarity=0.287 Sum_probs=54.6
Q ss_pred cccccccccccccccC--CCcEEEeecCeeccCCCcccccccceeecccCcceeeeEEEEeeeccCCCCceeEeeccCCC
Q psy12044 267 QEGKNVSLLCKVSAIP--EAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCVAENQAG 344 (767)
Q Consensus 267 ~~G~~vsL~C~a~g~P--~p~itW~~~g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~GtY~CvA~N~~G 344 (767)
..|..+.|.|.+.+.+ .+.+.|.+++..+...... ........+.....+.|.|..+...|.|.|+|.+.|..+
T Consensus 124 ~~g~~v~l~C~~~g~~p~~~~v~W~k~g~~l~~~~~~----~~~~~~~~~~~~~~s~L~i~~~~~~d~g~Y~C~v~~~~~ 199 (211)
T 3tv3_L 124 LQANKATLVCLISDFYPGAVTVAWKADSSPVKAGVET----TTPSKQSNNKYAASSYLSLTPEQWKSHRSYSCQVTHEGS 199 (211)
T ss_dssp HHTTCEEEEEEEEEEBSSCCEEEEEETTEEECTTEEE----CCCEECTTSSEEEEEEEEECHHHHHHSSCEEEEEEETTE
T ss_pred hcCCCeEEEEEeeeecCCCeEEEEEECCeecCCCccc----CCceECCCCCEEEEEEEEEcHHHhCCCCeEEEEEEECCC
Confidence 3689999999998863 5789999998876542111 001112233444557789999988999999999999876
Q ss_pred Cccc
Q psy12044 345 STSS 348 (767)
Q Consensus 345 ~s~~ 348 (767)
....
T Consensus 200 ~~~~ 203 (211)
T 3tv3_L 200 TVEK 203 (211)
T ss_dssp EEEE
T ss_pred CEEe
Confidence 5443
No 464
>3sob_L Antibody light chain; beta propeller, protein binding-immune system complex; 1.90A {Homo sapiens} PDB: 1pkq_A 3u1s_L*
Probab=95.84 E-value=0.0053 Score=60.94 Aligned_cols=77 Identities=21% Similarity=0.367 Sum_probs=54.0
Q ss_pred ccccccccccccccc-C-CCcEEEeecCeeccCCCcccccccceeecccCcceeeeEEEEeeeccCCCCceeEeeccCCC
Q psy12044 267 QEGKNVSLLCKVSAI-P-EAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCVAENQAG 344 (767)
Q Consensus 267 ~~G~~vsL~C~a~g~-P-~p~itW~~~g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~GtY~CvA~N~~G 344 (767)
..|+.+.|.|.+.+. | .+.++|.+++..+...... .........+.....+.|.+......|.|.|+|.+.|...
T Consensus 148 ~~g~~v~l~C~~~~~~p~~~~v~W~k~g~~~~~~~~~---~~~~~~~~~g~~~~~s~L~i~~~~~~d~g~Y~C~a~n~~~ 224 (237)
T 3sob_L 148 LKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQE---SVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGL 224 (237)
T ss_dssp HHHTEEEEEEEEEEEBSSCCEEEEEETTEECCSSEEE---EECCCCTTTCCEEEEEEEEEEHHHHTTCCEEEEEEECTTC
T ss_pred ccCCceEEEEEEcccCCCceEEEEEECCCCCCCceee---cccccccCCCcEEEEEEEEEcHHHccCCCcEEEEEeeCCC
Confidence 357789999999884 4 5899999998876542100 0001112234445567899999999999999999999876
Q ss_pred Cc
Q psy12044 345 ST 346 (767)
Q Consensus 345 ~s 346 (767)
..
T Consensus 225 ~~ 226 (237)
T 3sob_L 225 SS 226 (237)
T ss_dssp SS
T ss_pred CC
Confidence 54
No 465
>3nl4_L Antigen binding fragment, immunoglobulin IGG - LI; FAB, rabbit, conformation-specific, amyloid, immune system; 1.54A {Oryctolagus cuniculus} PDB: 4hbc_L
Probab=95.83 E-value=0.0047 Score=60.41 Aligned_cols=72 Identities=15% Similarity=0.356 Sum_probs=51.6
Q ss_pred ecccccccccccccc-cCCCcEEEeecCeeccCCCcccccccceeecccCcceeeeEEEEeeeccCCCCceeEeec
Q psy12044 266 IQEGKNVSLLCKVSA-IPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCVAE 340 (767)
Q Consensus 266 v~~G~~vsL~C~a~g-~P~p~itW~~~g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~GtY~CvA~ 340 (767)
+..|+.+.|.|.+.+ .|.+.+.|.+++..+........ .......+.....+.|.|..+...|.|.|+|.|.
T Consensus 126 ~~~g~~v~l~C~~~g~~P~~~v~W~k~g~~~~~~~~~~~---~~~~~~~~~~~~~s~L~i~~~~~~d~g~Y~C~a~ 198 (213)
T 3nl4_L 126 LVATGTVTIVCVANKYFPDVTVTWEVDGTTQTTGIENSK---TPQNSADCTYNLSSTLTLTSTEYNSHKEYTCKVT 198 (213)
T ss_dssp HHTTSEEEEEEEEEEEBSCCEEEEEETTEECCSSEEEEE---CCCCTTTCCEEEEEEEEEEHHHHHTCCEEEEEEE
T ss_pred hccCCcEeEEEEEecccCCcEEEEEeCCccCCCCeeccc---CcccCCCCeEEEEEEEEecHHHcCCCCeEEEEEE
Confidence 456889999999998 89999999999877653220000 0011122333445789999999999999999998
No 466
>3eow_R Poliovirus receptor; immunoglobulin super family, alternative splicing, cell adhesion, cell membrane, glycoprotein, HOST-virus interaction; 3.50A {Homo sapiens} PDB: 3uro_R 3epc_R* 3epd_R* 3epf_R*
Probab=95.81 E-value=0.011 Score=58.25 Aligned_cols=77 Identities=23% Similarity=0.245 Sum_probs=52.9
Q ss_pred ccccccc-cccccc-ccCCCcEEEeecCeeccCCCcccccccceeecccCcceeeeEEEEeeeccCCCCceeEeeccCCC
Q psy12044 267 QEGKNVS-LLCKVS-AIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCVAENQAG 344 (767)
Q Consensus 267 ~~G~~vs-L~C~a~-g~P~p~itW~~~g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~GtY~CvA~N~~G 344 (767)
..|..+. |.|.+. +.|.+.++|.+++........ ......+.....+.|.|..+...|.|.|+|.+.|..+
T Consensus 128 ~~g~~~~~l~C~~~~g~P~p~v~W~k~~~~~~~~~~-------~~~~~~~~~~~~s~L~i~~~~~~d~g~ytC~a~n~~~ 200 (221)
T 3eow_R 128 LTGEPVPMARCVSTGGRPPAQITWHSDLGGMPQTSQ-------VPGFLSGTVTVTSLWILVPSSQVDGKQVTCKVEHESF 200 (221)
T ss_dssp CCSSSCCEEEEEEESCSSCCCEEEECSSSCCCCCEE-------ECCCCBTTBCCEEEEECCCCSCCCCCCEEEEECCSCS
T ss_pred cCCceEEEEEEECCCccCCCeeEEEeCCCCCCccce-------eecCCCCcEEEEEEEEEeCCHHHCCCeEEEEEECCCC
Confidence 4677775 999987 889999999875322211100 1111233445567899999999999999999999987
Q ss_pred Ccccce
Q psy12044 345 STSSNY 350 (767)
Q Consensus 345 ~s~~s~ 350 (767)
.....+
T Consensus 201 ~~~~~~ 206 (221)
T 3eow_R 201 EKPQLL 206 (221)
T ss_dssp SSCEEE
T ss_pred CCCeEE
Confidence 654443
No 467
>2edo_A CD48 antigen; beta-sandwich, IG-fold, B-lymphocyte activation marker blast-1, BCM1 surface antigen, leukocyte antigen MEM-102, TCT.1; NMR {Homo sapiens}
Probab=95.80 E-value=0.0073 Score=54.46 Aligned_cols=89 Identities=17% Similarity=0.211 Sum_probs=54.9
Q ss_pred ceeecccccccccccc-cccCCCcEEEeecCe-eccCCCcc----c-ccc-cceeecccCcceeeeEEEEeeeccCCCCc
Q psy12044 263 YLEIQEGKNVSLLCKV-SAIPEAKITWLFDGV-PIQNESMS----A-SES-HAVYSTEEGTEIKKSELLIYNSNIDDNGT 334 (767)
Q Consensus 263 ~~~v~~G~~vsL~C~a-~g~P~p~itW~~~g~-~l~~~s~~----~-~~~-~~~~~~~~g~~~~~s~L~I~nvs~sD~Gt 334 (767)
.+.+.+|+.++|.|.. .......+.|++... .+...... . ... .+..+ ...++.|.|.+++.+|.|.
T Consensus 13 pv~~~~G~~VtL~c~~~~~~~~~~i~W~~~~~~~i~~~~~~~~~~~~~~f~~R~~l-----~~~~~sL~I~nv~~~DsG~ 87 (121)
T 2edo_A 13 HMTVVSGSNVTLNISESLPENYKQLTWFYTFDQKIVEWDSRKSKYFESKFKGRVRL-----DPQSGALYISKVQKEDNST 87 (121)
T ss_dssp CCEEETTSCEEECCSSCCCSSEEEEEEEEETTEEEEEECSSCEEECSCTTTTTCEE-----CTTTCCEEESSCCGGGCSE
T ss_pred EEEEEeCCCEEEeCCCCCCCceeEEEEEcCCCCeEEEEECcCCeEeChhcCCcEEE-----eCCCceEEEeCCCHHHCeE
Confidence 3577899999999987 344456899998642 22111100 0 000 00111 1134689999999999999
Q ss_pred eeEeeccCCC-CcccceEEEEEe
Q psy12044 335 FVCVAENQAG-STSSNYTIRIVL 356 (767)
Q Consensus 335 Y~CvA~N~~G-~s~~s~sL~V~~ 356 (767)
|.|...+..+ .....+.+.|..
T Consensus 88 Y~c~v~~~~~~~~~~~~~L~V~~ 110 (121)
T 2edo_A 88 YIMRVLKKTGNEQEWKIKLQVLD 110 (121)
T ss_dssp EEEEEEETTTEEEECCEECEEEC
T ss_pred EEEEEEcCCCcEEEEEEEEEEEC
Confidence 9999986654 334456666554
No 468
>2xzc_L FAB A.17 light chain; immune system; HET: XOP; 1.36A {Homo sapiens} PDB: 2xza_L* 3kdm_L* 3nps_C 1dn0_A 1qlr_A* 2v7n_A 3eo0_A 3eo1_A 2agj_L* 2fx7_L 1tzg_L 2fx8_L 2fx9_L* 1u6a_L 3hi1_L* 3kym_A 3kyk_L 3qwo_L* 3ixt_L* 3qeg_L ...
Probab=95.80 E-value=0.012 Score=57.82 Aligned_cols=76 Identities=17% Similarity=0.350 Sum_probs=52.7
Q ss_pred cccccccccccccc-CCC-cEEEeecCeeccCCCcccccccceeecccCcceeeeEEEEeeeccCCCCceeEeeccCCCC
Q psy12044 268 EGKNVSLLCKVSAI-PEA-KITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCVAENQAGS 345 (767)
Q Consensus 268 ~G~~vsL~C~a~g~-P~p-~itW~~~g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~GtY~CvA~N~~G~ 345 (767)
.|..+.|.|.+.+. |.+ .+.|.+++..+....... .......++.....+.|.|..+...|.|.|+|.|.|....
T Consensus 128 ~g~~v~L~C~~~g~~P~~~~v~W~k~g~~~~~~~~~~---~~~~~~~~g~~~~~s~L~i~~~~~~d~g~Y~C~a~n~~~~ 204 (216)
T 2xzc_L 128 KSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQES---VTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLS 204 (216)
T ss_dssp HTTEEEEEEEEEEEBSSCCEEEEEETTEECCSSEEEE---ECCCCTTTCCEEEEEEEEEEHHHHTTCCEEEEEEECTTCS
T ss_pred cCCcEEEEEEEEeEcCCceEEEEEECCeecCCCeeEe---cCcccCCCCCEEEEEEEEECHHHhCCCCcEEEEEEcCCCC
Confidence 57899999999884 554 899999988765431000 0001112333445568999999999999999999998755
Q ss_pred c
Q psy12044 346 T 346 (767)
Q Consensus 346 s 346 (767)
.
T Consensus 205 ~ 205 (216)
T 2xzc_L 205 S 205 (216)
T ss_dssp S
T ss_pred C
Confidence 3
No 469
>3rjd_A High affinity immunoglobulin gamma FC receptor I; immune system; HET: NAG MAN FUC P33; 2.65A {Homo sapiens}
Probab=95.77 E-value=0.0043 Score=62.47 Aligned_cols=75 Identities=21% Similarity=0.311 Sum_probs=59.6
Q ss_pred eeecccccccccccc-cccCCCcEEEeecCeeccCCCcccccccceeecccCcceeeeEEEEeeeccCCCCceeEeeccC
Q psy12044 264 LEIQEGKNVSLLCKV-SAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCVAENQ 342 (767)
Q Consensus 264 ~~v~~G~~vsL~C~a-~g~P~p~itW~~~g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~GtY~CvA~N~ 342 (767)
..+.+|+.+.|.|.+ .+.|.+.+.|.+++..+... .....|.|.++...|.|.|.|.+.|.
T Consensus 92 ~~~~~g~~v~l~C~~~~~~p~~~v~W~~~g~~~~~~------------------~~~~~l~i~~~~~~d~G~Y~C~~~n~ 153 (262)
T 3rjd_A 92 RVFTEGEPLALRCHAWKDKLVYNVLYYRNGKAFKFF------------------HWNSNLTILKTNISHNGTYHCSGMGK 153 (262)
T ss_dssp SEEETTSCEEEEEEEGGGCCCEEEEEEETTEEEEEE------------------EECCCEEESSCCGGGCEEEEEEEESS
T ss_pred eEEecCCeEEEEEEccCCCCCceEEEEECCcccccc------------------CCCCeEEEEECChhhCEEEEEEEeCC
Confidence 456789999999999 77788899999987665311 12356899999999999999999999
Q ss_pred CCCcccceEEEEEe
Q psy12044 343 AGSTSSNYTIRIVL 356 (767)
Q Consensus 343 ~G~s~~s~sL~V~~ 356 (767)
.+.....+.+.|..
T Consensus 154 ~~~~~~~~~l~V~~ 167 (262)
T 3rjd_A 154 HRYTSAGISVTVKE 167 (262)
T ss_dssp SEEEEECEEEEEEC
T ss_pred CCccccceEEEecc
Confidence 87776667776664
No 470
>2o26_X MAST/stem cell growth factor receptor; stem cell factor, receptor tyrosine kinase, class III, recep ligand complex, cytokine, 4-helix bundle; HET: NAG FUL MAN NDG; 2.50A {Mus musculus}
Probab=95.77 E-value=0.0088 Score=61.51 Aligned_cols=78 Identities=24% Similarity=0.399 Sum_probs=56.4
Q ss_pred CCCCCCccceeecccccccccccccccCCCcEEEeecCeeccCCCcccccccceeecccCcceeeeEEEEeeeccCCCCc
Q psy12044 255 PQITPSTFYLEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGT 334 (767)
Q Consensus 255 P~i~~~~~~~~v~~G~~vsL~C~a~g~P~p~itW~~~g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~Gt 334 (767)
|.+........+.+|+.+.|.|.+.+ .+.|.+++..+. ... ...+.|.|.++...|.|.
T Consensus 13 P~i~~~~~~~~v~~G~~v~l~C~~~~----~i~W~~~~~~~~------------~~~-----~~~~~L~i~~~~~~d~G~ 71 (290)
T 2o26_X 13 PSIHPAQSELIVEAGDTLSLTCIDPD----FVRWTFKTYFNE------------MVE-----NKKNEWIQEKAEATRTGT 71 (290)
T ss_dssp CEESSCSSEEEEETTSCEEEEEECTT----EEEEEEECSSSC------------EEE-----ECSSEEEETTCCGGGCEE
T ss_pred CEEeCCCCeEEEcCCCcEEEEECCCC----cEEEecCCccee------------eec-----CCCceEEEeccCHHhCeE
Confidence 34444555677889999999999988 899999876550 000 112689999999999999
Q ss_pred eeEeeccCCCCcccceEEEEEe
Q psy12044 335 FVCVAENQAGSTSSNYTIRIVL 356 (767)
Q Consensus 335 Y~CvA~N~~G~s~~s~sL~V~~ 356 (767)
|.|.+.| |. ...+.+.|..
T Consensus 72 Y~C~~~n--g~-~~~~~l~V~~ 90 (290)
T 2o26_X 72 YTCSNSN--GL-TSSIYVFVRD 90 (290)
T ss_dssp EEEEESS--SC-EEEEEEEEEC
T ss_pred EEEEeeC--Cc-cEEEEEEEeC
Confidence 9999999 43 4445555543
No 471
>1pz5_B Heavy chain of FAB (SYA/J6); antibody-antigen structure, peptide-carbohydrate mimicry, VA design, immune system; 1.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1m7d_B* 1m71_B* 1m7i_B* 1r24_B 1uz6_F 1uz8_B* 1clz_H*
Probab=95.77 E-value=0.0037 Score=61.76 Aligned_cols=75 Identities=21% Similarity=0.333 Sum_probs=51.2
Q ss_pred eccccccccccccccc-CCC-cEEEeecCeeccCCCcccccccceeecccCcceeeeEEEEeeeccCCCCceeEeeccCC
Q psy12044 266 IQEGKNVSLLCKVSAI-PEA-KITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCVAENQA 343 (767)
Q Consensus 266 v~~G~~vsL~C~a~g~-P~p-~itW~~~g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~GtY~CvA~N~~ 343 (767)
+..|..+.|.|.+.+. |.| .++|.+++......... . . . ..+.....+.|.|......+ |.|+|.|.|..
T Consensus 137 ~~~g~~v~L~C~~~g~~P~p~~v~W~~~~~~~~~~~~~----~-~-~-~~~~~~~~s~L~i~~~~~~~-g~Y~C~a~n~~ 208 (220)
T 1pz5_B 137 DTSGSSVTLGCLVKGYFPEPVTVKWNYGALSSGVRTVS----S-V-L-QSGFYSLSSLVTVPSSTWPS-QTVICNVAHPA 208 (220)
T ss_dssp CSCSSSEEEEEEEEEEBSSCCEEEEGGGTCCTTEEECC----C-E-E-ETTEEEEEEEEEECGGGTTT-SCCEEEEEEGG
T ss_pred cCCCCcEEEEEEEEEEeCCCeEEEEecCCcccceEEcC----C-c-c-cCCeEEEEEEEEEcchhcCC-ceEEEEEEECC
Confidence 4678999999999987 888 99999876531100000 0 0 0 11333345778888887766 99999999998
Q ss_pred CCccc
Q psy12044 344 GSTSS 348 (767)
Q Consensus 344 G~s~~ 348 (767)
|...+
T Consensus 209 ~~~~~ 213 (220)
T 1pz5_B 209 SKVDL 213 (220)
T ss_dssp GTEEE
T ss_pred ccEee
Confidence 86444
No 472
>2rcj_C Light chain; immunoglobulin M, polymeric antibodies, immunology, X-RAY solution scattering, constrained modelling, immune system; NMR {Homo sapiens}
Probab=95.76 E-value=0.011 Score=66.78 Aligned_cols=84 Identities=13% Similarity=0.283 Sum_probs=59.2
Q ss_pred eecccccccccccccccCCC--cEEEeecCeeccCCCcccccccceeecccCcceeeeEEEEeeeccCCCCceeEeeccC
Q psy12044 265 EIQEGKNVSLLCKVSAIPEA--KITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCVAENQ 342 (767)
Q Consensus 265 ~v~~G~~vsL~C~a~g~P~p--~itW~~~g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~GtY~CvA~N~ 342 (767)
.+..|+.+.|.|.+.+.+.+ .++|.+++..+....... .......+.....+.|.|.++...|.|.|.|.|.|.
T Consensus 125 ~~~~g~~v~l~C~~~g~~p~~~~v~W~k~g~~l~~~~~~~----~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~ 200 (523)
T 2rcj_C 125 EELQANKATLVCLISDFYPGAVTVAWKADGSPVKAGVETT----KPSKQSNNKYAASSYLSLTPEQWKSHRSYSCQVTHE 200 (523)
T ss_pred cccCCCceEEEEEeccccCCceEEEEecCCCCCCCceEec----cccccCCCCEEEEEEEEEechhcCCCceEEEEEEec
Confidence 44578899999999998764 899999887664321110 001112233344568999999999999999999999
Q ss_pred CCCcccceEE
Q psy12044 343 AGSTSSNYTI 352 (767)
Q Consensus 343 ~G~s~~s~sL 352 (767)
.|.....+.+
T Consensus 201 ~~~~~~~~~~ 210 (523)
T 2rcj_C 201 GSTVEKTVAP 210 (523)
T ss_pred Ccccccceee
Confidence 8876655543
No 473
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=95.75 E-value=0.0025 Score=63.04 Aligned_cols=111 Identities=11% Similarity=0.067 Sum_probs=73.6
Q ss_pred CCccEEEeeCC-CCCCCCchhhhcc--CCCCccEEEccCCCCCccC----cccccCCCCCCEEEccCCCCCCCC----CC
Q psy12044 49 PNTQVLDYTGN-NLKTLHNEKFQKM--GLVNLQKIYLSRCRISVID----SKAFRGLTNLVDLDFSHNVLQTVP----SD 117 (767)
Q Consensus 49 ~~L~~L~Ls~N-~L~~l~~~~f~~~--~L~~L~~L~Ls~N~L~~i~----p~~f~~L~~L~~L~Ls~N~Lt~l~----p~ 117 (767)
..|+.|+|++| .|..-....+... .-..|+.|+|++|.|.... ..++..-..|+.|+|++|.|.... ..
T Consensus 41 ~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~ 120 (197)
T 1pgv_A 41 TDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLR 120 (197)
T ss_dssp SSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHH
T ss_pred CCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHHH
Confidence 57999999986 8875332222210 2468999999999998643 345556689999999999998532 23
Q ss_pred CCCCCCCCcEEECCCCcC---ccc----ccCCcCCCCCccEEeccCCCc
Q psy12044 118 TFPDYPSLMKLTLSGNPI---KQI----KTGAFQPLSYLVTLELSKCGI 159 (767)
Q Consensus 118 ~f~~l~~L~~L~Ls~N~l---~~l----~~~~~~~l~~L~~L~Ls~N~L 159 (767)
.+..-..|+.|+|++|.. ... ....+..-++|+.|+|+.|.+
T Consensus 121 aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~~ 169 (197)
T 1pgv_A 121 STLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASM 169 (197)
T ss_dssp HTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCH
T ss_pred HHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCCc
Confidence 455667899999997643 221 112333445666777765544
No 474
>3d9a_H Heavy chain of hyhel10 antibody fragment (FAB); lysozyme, antigen, allergen, antimic bacteriolytic enzyme, glycosidase, hydrolase; 1.20A {Mus musculus} PDB: 3hfm_H 1gpo_H 3ks0_H* 1dqd_H 1ndm_B 1nak_H 1dqq_B 1dqm_H 1dqj_B 1nby_B 1nbz_B 1xgu_B 1ndg_B 1xgt_B 1xgp_B 1xgq_B 1xgr_B 1s5i_H 1f8t_H 1f90_H ...
Probab=95.75 E-value=0.0044 Score=60.74 Aligned_cols=74 Identities=23% Similarity=0.296 Sum_probs=51.5
Q ss_pred eeccccccccccccccc-CCC-cEEEeecCeeccCCCcccccccceeecccCcceeeeEEEEeeeccCCCCceeEeeccC
Q psy12044 265 EIQEGKNVSLLCKVSAI-PEA-KITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCVAENQ 342 (767)
Q Consensus 265 ~v~~G~~vsL~C~a~g~-P~p-~itW~~~g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~GtY~CvA~N~ 342 (767)
.+..|..+.|.|.+.+. |.| .+.|.+++..+...... . . ...+.....+.|.|..+...+ |.|+|.|.|.
T Consensus 129 ~~~~g~~v~L~C~~~g~~P~p~~v~W~~~~~~~~~~~~~----~-~--~~~~~~~~~s~L~i~~~~~~~-g~Y~C~a~n~ 200 (210)
T 3d9a_H 129 AAQTNSMVTLGCLVKGYFPEPVTVTWNSGSLSSGVHTFP----A-V--LQSDLYTLSSSVTVPSSTWPS-ETVTCNVAHP 200 (210)
T ss_dssp SCCCSSEEEEEEEEEEEBSSCCEEEEGGGTBCTTEEECC----C-E--EETTEEEEEEEEEEEGGGTTT-SCCEEEEEEG
T ss_pred ccccCCcEEEEEEEeeEecCCcEEEEeeCCcccceEEcC----C-c--cCCCcEEEEEEEEEcHHHcCC-CcEEEEEEeC
Confidence 34678999999999987 888 99999987643211000 0 0 011333445678998888766 9999999998
Q ss_pred CCCc
Q psy12044 343 AGST 346 (767)
Q Consensus 343 ~G~s 346 (767)
.|..
T Consensus 201 ~~~~ 204 (210)
T 3d9a_H 201 ASST 204 (210)
T ss_dssp GGTE
T ss_pred CCCc
Confidence 8764
No 475
>3auv_A SC-DSFV derived from the G6-FAB; SC-DSFV (disulfide-stabilized SCFV), SCFV, monovalent antibo antibody engineering, immune system; 2.40A {Homo sapiens} PDB: 2kh2_B 3iy0_L
Probab=95.74 E-value=0.0098 Score=61.26 Aligned_cols=84 Identities=15% Similarity=0.198 Sum_probs=54.8
Q ss_pred CCccceeecccccccccccccccCCCcEEEeecCe-----eccC-CCcc-cccccceeecccCcceeeeEEEEeeeccCC
Q psy12044 259 PSTFYLEIQEGKNVSLLCKVSAIPEAKITWLFDGV-----PIQN-ESMS-ASESHAVYSTEEGTEIKKSELLIYNSNIDD 331 (767)
Q Consensus 259 ~~~~~~~v~~G~~vsL~C~a~g~P~p~itW~~~g~-----~l~~-~s~~-~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD 331 (767)
..+..+.+.+|+.++|.|.+.+.+.+.+.|+++.. .+.. .... ......+.... ......|.|.++..+|
T Consensus 17 ~~p~~~~v~~G~~v~L~C~~~~~p~~~i~W~r~~~~~~~~~~~~~~~~~~~~~~~r~~~~~---~~~~~~L~I~~v~~~D 93 (276)
T 3auv_A 17 QSPSSLSASVGDRVTITCRASQDVSTAVAWYQQKPGKAPKLLIYSASFLYSGVPSRFSGSG---SGTDFTLTISSLQPED 93 (276)
T ss_dssp EECSEEECCTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEE---ETTEEEEEESSCCGGG
T ss_pred eCCCeEEEcCCCCEEEEeEcCCCCCCcEEEEEECCCCCCEEEEEEcCccCCCCCCCEEEec---cCCeEEEEEccCChhh
Confidence 33456678899999999999999999999988431 1110 0000 00001111110 1123579999999999
Q ss_pred CCceeEeeccCCCC
Q psy12044 332 NGTFVCVAENQAGS 345 (767)
Q Consensus 332 ~GtY~CvA~N~~G~ 345 (767)
.|.|.|.+.|..+.
T Consensus 94 sG~Y~C~~~n~~~~ 107 (276)
T 3auv_A 94 FATYYCQQHYTTPP 107 (276)
T ss_dssp CEEEEEEECSSSSC
T ss_pred CEEEEEEEecCCcc
Confidence 99999999987654
No 476
>4fom_A Poliovirus receptor-related protein 3; immunoglobulin-like domain, IG domain, cell adhesion; HET: NAG BMA MAN FUC; 3.93A {Homo sapiens}
Probab=95.72 E-value=0.013 Score=60.85 Aligned_cols=84 Identities=17% Similarity=0.262 Sum_probs=60.0
Q ss_pred eecccccccccccc-cccCCCcEEEeecCeeccCCCcccccccceeecccCcceeeeEEEEeeeccCCCCceeEeeccCC
Q psy12044 265 EIQEGKNVSLLCKV-SAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCVAENQA 343 (767)
Q Consensus 265 ~v~~G~~vsL~C~a-~g~P~p~itW~~~g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~GtY~CvA~N~~ 343 (767)
....+..+.+.|.+ .+.|.+.+.|.+++..+..... ....+.....+.|.|..+...|.|.|+|.+.|..
T Consensus 125 ~~~~~~~~~l~C~~~~g~P~~~i~W~~~~~~~~~~~~---------~~~~~~~~~~s~l~i~~~~~~d~g~Y~C~a~n~~ 195 (308)
T 4fom_A 125 IDGGNETVAAICIAATGKPVAHIDWEGDLGEMESTTT---------SFPNETATIISQYKLFPTRFARGRRITCVVKHPA 195 (308)
T ss_dssp CTTCSCEEEEEEEEEEEBSCCEEEECCCSSBCCEEEE---------ECTTSCEEEEEEEEECCCGGGTTCEEEEEEECTT
T ss_pred EEcCCceEEEEEEecCCcCCceEEEEECCcccccccc---------eeeeecccccccceEEeeeecCCccEEEEEEccC
Confidence 34457788999975 6889999999998766533211 1122333445679999999999999999999998
Q ss_pred CCcccceEEEEEee
Q psy12044 344 GSTSSNYTIRIVLK 357 (767)
Q Consensus 344 G~s~~s~sL~V~~~ 357 (767)
|.......+.+.+.
T Consensus 196 ~~~~~~~~~~l~V~ 209 (308)
T 4fom_A 196 LEKDIRYSFILDIQ 209 (308)
T ss_dssp CSSCEEEEEECCCC
T ss_pred CCCceEEeEEEEEe
Confidence 87766555554443
No 477
>1u3h_A T-cell receptor alpha-chain; complex, immune system; 2.42A {Mus musculus} SCOP: b.1.1.1 PDB: 1b88_A 1kj2_A* 1kb5_A 1d9k_A*
Probab=94.70 E-value=0.0017 Score=57.33 Aligned_cols=81 Identities=22% Similarity=0.206 Sum_probs=51.1
Q ss_pred ccceeecccccccccccccccCCCcEEEeecC--eecc---C-CCcc-cccccceeecccCcceeeeEEEEeeeccCCCC
Q psy12044 261 TFYLEIQEGKNVSLLCKVSAIPEAKITWLFDG--VPIQ---N-ESMS-ASESHAVYSTEEGTEIKKSELLIYNSNIDDNG 333 (767)
Q Consensus 261 ~~~~~v~~G~~vsL~C~a~g~P~p~itW~~~g--~~l~---~-~s~~-~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~G 333 (767)
+..+.+.+|+.++|.|.+.+.+.+.+.|.+.. .... . .... .....++.... ........|.|.++..+|.|
T Consensus 6 p~~v~v~~G~~v~L~C~~~~~~~~~v~W~r~~~g~~~~~l~~~~~~~~~~~~~R~~~~~-~~~~~~~~L~I~~v~~~DsG 84 (110)
T 1u3h_A 6 PQSLTVWEGETAILNCSYENSAFDYFPWYQQFPGEGPALLISILSVSDKKEDGRFTIFF-NKREKKLSLHIADSQPGDSA 84 (110)
Confidence 34567789999999999988888899998843 1110 0 0000 00001111111 11233468999999999999
Q ss_pred ceeEeeccC
Q psy12044 334 TFVCVAENQ 342 (767)
Q Consensus 334 tY~CvA~N~ 342 (767)
.|.|.+.+.
T Consensus 85 ~Y~C~~~~~ 93 (110)
T 1u3h_A 85 TYFCAASAN 93 (110)
Confidence 999999874
No 478
>2yc1_B Single chain antibody fragment 9004G; immune system-toxin complex, scorpion toxin; 1.90A {Homo sapiens} PDB: 2ybr_B 3lh2_L 3h3p_L 3lhp_L
Probab=95.71 E-value=0.01 Score=55.69 Aligned_cols=81 Identities=16% Similarity=0.212 Sum_probs=52.4
Q ss_pred CCccceeecccccccccccccccCCCcEEEeecC--e---eccC-CCccccc-ccceeecccCcceeeeEEEEeeeccCC
Q psy12044 259 PSTFYLEIQEGKNVSLLCKVSAIPEAKITWLFDG--V---PIQN-ESMSASE-SHAVYSTEEGTEIKKSELLIYNSNIDD 331 (767)
Q Consensus 259 ~~~~~~~v~~G~~vsL~C~a~g~P~p~itW~~~g--~---~l~~-~s~~~~~-~~~~~~~~~g~~~~~s~L~I~nvs~sD 331 (767)
..+..+.+.+|+.++|.|.+.+.+.+.+.|++.. . .+.. ....... ..++.... ......|.|.+++.+|
T Consensus 21 q~p~~v~v~~G~sVtL~C~~s~~~~~~v~Wyrq~~g~~~~~li~~~~~~~~~~~~Rfs~~~---~~~~~sL~I~~v~~~D 97 (146)
T 2yc1_B 21 QSPATLSVSPGERATLSCRASQSVRSYLAWYQQKPGQAPRLLFSDASNRATGIPARFTGSG---SGTDFTLTISSLEPED 97 (146)
T ss_dssp EECSEEEECTTSCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEE---ETTEEEEEESSCCGGG
T ss_pred EeCCEEEEecCCCEEEEEEECCCCCCEEEEEEECCCCCCEEEEEeCCccCCCcCCCeEEec---CCCEEEEEECCCCHHH
Confidence 3345677889999999999988777889998842 1 1111 1000000 11111110 1234679999999999
Q ss_pred CCceeEeeccC
Q psy12044 332 NGTFVCVAENQ 342 (767)
Q Consensus 332 ~GtY~CvA~N~ 342 (767)
.|.|.|.+.+.
T Consensus 98 sG~Y~C~~~~~ 108 (146)
T 2yc1_B 98 FAIYYCQQYRY 108 (146)
T ss_dssp CSEEEEEECSS
T ss_pred CEEEEEEEecC
Confidence 99999999875
No 479
>3eow_R Poliovirus receptor; immunoglobulin super family, alternative splicing, cell adhesion, cell membrane, glycoprotein, HOST-virus interaction; 3.50A {Homo sapiens} PDB: 3uro_R 3epc_R* 3epd_R* 3epf_R*
Probab=95.70 E-value=0.0092 Score=58.81 Aligned_cols=93 Identities=19% Similarity=0.357 Sum_probs=55.5
Q ss_pred ceeecccccccccccccc-cCCCc----EEEeecCeeccCCCccccc------ccceeecccCc--ceeeeEEEEeeecc
Q psy12044 263 YLEIQEGKNVSLLCKVSA-IPEAK----ITWLFDGVPIQNESMSASE------SHAVYSTEEGT--EIKKSELLIYNSNI 329 (767)
Q Consensus 263 ~~~v~~G~~vsL~C~a~g-~P~p~----itW~~~g~~l~~~s~~~~~------~~~~~~~~~g~--~~~~s~L~I~nvs~ 329 (767)
.+.+..|+.+.|.|.+.+ .+.+. +.|.+++....-....... ..+..+..... ......|.|.++..
T Consensus 8 ~v~~~~G~~v~L~C~~~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~sL~I~~v~~ 87 (221)
T 3eow_R 8 QVPGFLGDSVTLPCYLQVPNMEVTHVSQLTWARHGESGSMAVFHQTQGPSYSESKRLEFVAARLGAELRDASLRMFGLRV 87 (221)
T ss_dssp CCCCCCSSCCEEECCCCCCSSSCCCEEEEEECBSSSCSSCCCEEESSSEEECSCSSCEEESSCSSCCCCCCEEECCCSSC
T ss_pred cEEEEeCCCEEEEeeeccCCCCCccceEEEEEeCCCCceEEEEECCCCCCcCCCCcEEEecccCCCCCCCceEEEccCCh
Confidence 456778999999999854 44444 9999875321111000000 01111111111 12356899999999
Q ss_pred CCCCceeEeeccCC-CCcccceEEEEE
Q psy12044 330 DDNGTFVCVAENQA-GSTSSNYTIRIV 355 (767)
Q Consensus 330 sD~GtY~CvA~N~~-G~s~~s~sL~V~ 355 (767)
+|.|.|.|.+.+.. |.....+.+.|.
T Consensus 88 ~D~G~Y~C~~~~~~~~~~~~~~~L~V~ 114 (221)
T 3eow_R 88 EDEGSYTCLFVTFPQGSRSVDIWLRVL 114 (221)
T ss_dssp CCCSCBEEEEEESSSCSCEEECCCCCC
T ss_pred HHCeEEEEEEEeCCCCceEEEEEEEEE
Confidence 99999999999876 555444444443
No 480
>1moe_A Anti-CEA MAB T84.66; anti carcinoembryonic antigen, diabody, dimer, SCFV, variable domain, immune system; 2.60A {Mus musculus} SCOP: b.1.1.1 b.1.1.1
Probab=95.70 E-value=0.012 Score=58.76 Aligned_cols=93 Identities=17% Similarity=0.210 Sum_probs=58.0
Q ss_pred ccceeecccccccccccccccC----CCcEEEeecC--ee---ccC-CCcccc-cccceeecccCcceeeeEEEEeeecc
Q psy12044 261 TFYLEIQEGKNVSLLCKVSAIP----EAKITWLFDG--VP---IQN-ESMSAS-ESHAVYSTEEGTEIKKSELLIYNSNI 329 (767)
Q Consensus 261 ~~~~~v~~G~~vsL~C~a~g~P----~p~itW~~~g--~~---l~~-~s~~~~-~~~~~~~~~~g~~~~~s~L~I~nvs~ 329 (767)
+....+.+|+.+.|.|.+.+.+ .+.+.|.++. .. +.. ...... ...++.... ......|.|.++..
T Consensus 8 p~~~~v~~G~~v~L~C~~~~~~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~---~~~~~~L~I~~v~~ 84 (240)
T 1moe_A 8 PASLAVSLGQRATMSCRAGESVDIFGVGFLHWYQQKPGQPPKLLIYRASNLESGIPVRFSGTG---SRTDFTLIIDPVEA 84 (240)
T ss_dssp CSEEEECTTSCEEEEEEESSCCEETTEECEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEE---ETTEEEEEESSCCG
T ss_pred CCeEEecCCCCEEEEEeCCCccccCCCceEEEEEECCCCCceEEEEEecccCcCCCccEEEEe---cCCeEEEEEcCCCh
Confidence 3456788999999999999988 7899998842 21 110 000000 011111111 11234799999999
Q ss_pred CCCCceeEeeccCCCC-cccceEEEEEe
Q psy12044 330 DDNGTFVCVAENQAGS-TSSNYTIRIVL 356 (767)
Q Consensus 330 sD~GtY~CvA~N~~G~-s~~s~sL~V~~ 356 (767)
+|.|.|.|.+.|..+. ......+.|..
T Consensus 85 ~D~G~Y~C~~~n~~~~~~~~~~~l~V~~ 112 (240)
T 1moe_A 85 DDVATYYCQQTNEDPYTFGGGTKLEIKG 112 (240)
T ss_dssp GGCEEEEEEECSSSSCCBCCCEEEEECC
T ss_pred hhCEEEEEEEccCCceeecCCEEEEEec
Confidence 9999999999998664 22344555443
No 481
>4i0k_A CD276 antigen; immunoglobulin domain, glycoprotein, immunity, adaptive IMMU structural genomics, protein structure initiative; HET: NAG BMA MAN; 2.97A {Mus musculus}
Probab=95.69 E-value=0.0072 Score=59.39 Aligned_cols=91 Identities=14% Similarity=0.252 Sum_probs=56.1
Q ss_pred eeecccccccccccccccCC-----CcEEEeecCeeccCCCc------ccccccceeecccCcceeeeEEEEeeeccCCC
Q psy12044 264 LEIQEGKNVSLLCKVSAIPE-----AKITWLFDGVPIQNESM------SASESHAVYSTEEGTEIKKSELLIYNSNIDDN 332 (767)
Q Consensus 264 ~~v~~G~~vsL~C~a~g~P~-----p~itW~~~g~~l~~~s~------~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~ 332 (767)
+.+.+|+.+.|.|.+.+.+. +.+.|.+++....-... .........+...........|.|.++...|.
T Consensus 5 v~~~~G~~v~L~C~~~~~~~~~~~~~~v~W~~~~~~~~i~~~~~~~~~~~~~~~r~~~~~~~~~~~~~sL~I~~v~~~D~ 84 (222)
T 4i0k_A 5 VVALVDTDATLRCSFSPEPGFSLAQLNLIWQLTDTKQLVHSFTEGRDQGSAYSNRTALFPDLLVQGNASLRLQRVRVTDE 84 (222)
T ss_dssp CCCCTTSCEEECCBCCCCTTCCTTTEEEEEEETTTCCEEEEEETTEEEEESSCSCEECCTTTGGGTBCCEEECSCCGGGC
T ss_pred EEEECCCCeEEEEEecCCCCCCCCceEEEEEECCCccEEEEEcCCcccccceeCcEEEecccccCCeEEEEECCcccccC
Confidence 45678999999999988754 78999986532210000 00001112222222233357899999999999
Q ss_pred CceeEeeccCCCCcccceEEEEE
Q psy12044 333 GTFVCVAENQAGSTSSNYTIRIV 355 (767)
Q Consensus 333 GtY~CvA~N~~G~s~~s~sL~V~ 355 (767)
|.|.|.+.+. +.....+.+.|.
T Consensus 85 G~Y~C~~~~~-~~~~~~~~l~V~ 106 (222)
T 4i0k_A 85 GSYTCFVSIQ-DFDSAAVSLQVA 106 (222)
T ss_dssp SCEEEEEEEC-CCCCCCCCCCCC
T ss_pred EEEEEEEEeC-CCceEEEEEEEE
Confidence 9999999985 333444444443
No 482
>1nkr_A P58-CL42 KIR; inhibitory receptor, natural killer cells, immunological receptors, immunoglobulin fold; 1.70A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1m4k_A 1efx_D 2dli_A 2dl2_A 3h8n_A
Probab=95.68 E-value=0.0081 Score=58.56 Aligned_cols=69 Identities=14% Similarity=0.133 Sum_probs=49.1
Q ss_pred eeecccccccccccccccCCCcEEEeecCeeccCCCcccccccceeecccCcceeeeEEEEeeeccCCCCceeEeeccC
Q psy12044 264 LEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCVAENQ 342 (767)
Q Consensus 264 ~~v~~G~~vsL~C~a~g~P~p~itW~~~g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~GtY~CvA~N~ 342 (767)
..+.+|+.++|.|.+.. +.+.+.|++++..+...... . .. ........|.|.++...|.|.|.|.+.+.
T Consensus 17 ~~v~~G~~v~L~C~~~~-~~~~~~w~k~g~~~~~~~~~----~--~~---~~~~~~~~l~I~~v~~~D~G~Y~C~a~~~ 85 (201)
T 1nkr_A 17 PLVKSEETVILQCWSDV-MFEHFLLHREGMFNDTLRLI----G--EH---HDGVSKANFSISRMTQDLAGTYRCYGSVT 85 (201)
T ss_dssp SEEETTCCEEEEEEESS-CCSEEEEEEESSSCEEEEEE----C--EE---ETTEEEEEEEESSCCGGGCEEEEEEEEBT
T ss_pred CccCCCCcEEEEEeccC-CCCEEEEEECCCcCCcceee----e--ec---CCCCceEEEEeccCCcccCeEEEEeEecC
Confidence 45678999999999874 77899999987654321100 0 00 01123567999999999999999999764
No 483
>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster}
Probab=95.68 E-value=0.0095 Score=71.19 Aligned_cols=88 Identities=24% Similarity=0.388 Sum_probs=64.5
Q ss_pred eeecccccccccccccccCCCcEEEeecCeeccCCCcccccccceeecccCcceeeeEEEEeeeccCCCCceeEeeccCC
Q psy12044 264 LEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCVAENQA 343 (767)
Q Consensus 264 ~~v~~G~~vsL~C~a~g~P~p~itW~~~g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~GtY~CvA~N~~ 343 (767)
..+..|..+.|.|.+.+.|.+.+.|.+++..+......... .+... .....+.|.|.++...|.|.|+|.+.|..
T Consensus 439 ~~v~~G~~v~L~C~~~g~p~p~v~W~~~g~~l~~~~~~~~~---~~~~~--~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~ 513 (816)
T 3dmk_A 439 ETMEPGPSVFLKCVAGGNPTPEISWELDGKKIANNDRYQVG---QYVTV--NGDVVSYLNITSVHANDGGLYKCIAKSKV 513 (816)
T ss_dssp EEECSSSCEEEEEEEECSSCCEEEEEETTEECCSCTTEEEE---EEECT--TSCEEEEEEESSCCTTTCEEEEEEEEETT
T ss_pred eEEcCCCCEEEEEEEecCCCCEEEEEECCEECCCCCCcccc---cEEec--CCCcEEEEEEeeccccCCEEEEEEEEECC
Confidence 45678999999999999999999999988776543221000 00111 12234579999999999999999999999
Q ss_pred CCcccceEEEEEe
Q psy12044 344 GSTSSNYTIRIVL 356 (767)
Q Consensus 344 G~s~~s~sL~V~~ 356 (767)
|.....+.+.|..
T Consensus 514 g~~~~~~~l~V~~ 526 (816)
T 3dmk_A 514 GVAEHSAKLNVYG 526 (816)
T ss_dssp EEEEEEEEEEECS
T ss_pred CeEEEEEEEEEec
Confidence 9877777666653
No 484
>1vca_A VCAM-D1,2, human vascular cell adhesion molecule-1; immunoglobulin superfamily, integrin-binding, cell adhesion protein; 1.80A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 PDB: 1ij9_A 1vsc_A
Probab=95.68 E-value=0.0096 Score=58.47 Aligned_cols=77 Identities=17% Similarity=0.224 Sum_probs=51.7
Q ss_pred eeecccccccccccccccCC---CcEEEeecCeeccCCCcccccccceeecccCcceeeeEEEEeeeccCCCCceeEeec
Q psy12044 264 LEIQEGKNVSLLCKVSAIPE---AKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCVAE 340 (767)
Q Consensus 264 ~~v~~G~~vsL~C~a~g~P~---p~itW~~~g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~GtY~CvA~ 340 (767)
..+..|+.++|.|.+.+.+. +.++|++++..+......... .........+.|.+......|.|.|+|.|.
T Consensus 101 ~~~~~G~~~~L~C~~~~~~p~~~~~i~W~k~~~~l~~~~~~~~~------~~~~~~~~~~~l~i~~~~~d~~g~ytC~A~ 174 (202)
T 1vca_A 101 GPLEAGKPITVKCSVADVYPFDRLEIDLLKGDHLMKSQEFLEDA------DRKSLETKSLEVTFTPVIEDIGKVLVCRAK 174 (202)
T ss_dssp SCEETTSCEEEEEEEEEEBSGGGEEEEEEETTEEEEEEECCSCC------SSCCCEEEEEEEEECCCGGGTTCEEEEEEE
T ss_pred eEEcCCCCEEEEEEECCcCCCCCeEEEEEeCCeECccccccccc------CcCcceEEEEEEEEEeeeccCCCeEEEEEE
Confidence 45778999999999988643 378999998766432211000 000112234566777777788899999999
Q ss_pred cCCCCc
Q psy12044 341 NQAGST 346 (767)
Q Consensus 341 N~~G~s 346 (767)
|..|..
T Consensus 175 n~~~~~ 180 (202)
T 1vca_A 175 LHIDEM 180 (202)
T ss_dssp ECSCCC
T ss_pred ccccCC
Confidence 988764
No 485
>2rgs_A I, IG gamma-2B heavy chain; FC-fragment, immunoglobulin, glycosylation, immune system; HET: NAG FUC MAN GAL; 2.13A {Mus musculus}
Probab=95.65 E-value=0.0057 Score=60.73 Aligned_cols=76 Identities=16% Similarity=0.251 Sum_probs=53.7
Q ss_pred eccccccccccccccc---CC-CcEEEeecCeeccCCCcccccccceeecccCcceeeeEEEEeeeccCCCCceeEeecc
Q psy12044 266 IQEGKNVSLLCKVSAI---PE-AKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCVAEN 341 (767)
Q Consensus 266 v~~G~~vsL~C~a~g~---P~-p~itW~~~g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~GtY~CvA~N 341 (767)
+..|+.+.|.|.+.+. |. +.+.|++++..+...... .......+.....+.|.|.++...|.|.|.|.+.|
T Consensus 23 v~~G~~v~L~C~~~g~~~~p~~~~v~W~k~~~~~~~~~~~-----~~~~~~~~~~~~~~~L~I~~~~~~D~g~Y~C~~~~ 97 (218)
T 2rgs_A 23 LMISLTPKVTCVVVDVSEDDPDVQISWFVNNVEVHTAQTQ-----THREDYNSTIRVVSTLPIQHQDWMSGKEFKCKVNN 97 (218)
T ss_dssp HCTTSCCEEEEEEEEECTTSCCEEEEEEETTEEECCCEEE-----EEEETTTTEEEEEEEEECCHHHHHTTCCEEEEEEE
T ss_pred hccCCCeeEEEEEcCCccCCCceEEEEEECCccccCcccc-----cccccCCCeEEEEEEEEEcHHHcCCCCeEEEEEEC
Confidence 6789999999999887 33 799999988665422110 00011122233457899999999999999999999
Q ss_pred CCCCc
Q psy12044 342 QAGST 346 (767)
Q Consensus 342 ~~G~s 346 (767)
..+..
T Consensus 98 ~~~~~ 102 (218)
T 2rgs_A 98 KDLPS 102 (218)
T ss_dssp TTCSS
T ss_pred CcCCC
Confidence 87643
No 486
>1wio_A CD4, T-cell surface glycoprotein CD4; immunoglobulin fold, transmembrane, MHC lipoprotein, polymorphism; 3.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1 b.1.1.3 b.1.1.3 PDB: 1wip_A 1wiq_A 3t0e_E
Probab=95.65 E-value=0.0048 Score=66.07 Aligned_cols=71 Identities=11% Similarity=0.162 Sum_probs=56.1
Q ss_pred eecccccccccccccccCCCcEEEeecCeeccCCCcccccccceeecccCcceeeeEEEEeeeccCCCCceeEeeccCCC
Q psy12044 265 EIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCVAENQAG 344 (767)
Q Consensus 265 ~v~~G~~vsL~C~a~g~P~p~itW~~~g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~GtY~CvA~N~~G 344 (767)
.+.+|+.+.|.|.+.+.|.+.+.|.+++..+ ......|.|.++...|.|.|.|.+.|..+
T Consensus 107 ~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~--------------------~~~~~~L~i~~v~~~d~G~Y~C~a~~~~~ 166 (363)
T 1wio_A 107 HLLQGQSLTLTLESPPGSSPSVQCRSPRGKN--------------------IQGGKTLSVSQLELQDSGTWTCTVLQNQK 166 (363)
T ss_dssp SEESBSCEEEEEECCTTCCCCEEEECSSSCE--------------------EEESSEEEECSBCGGGCEECEEEEEETTE
T ss_pred EEecCCCEEEEEEcCCCCCCeEEEEcCCCcc--------------------cccceEEEEeeCChhcCCEEEEEEecCCC
Confidence 5678999999999999999999999876432 11345799999999999999999998766
Q ss_pred CcccceEEEEE
Q psy12044 345 STSSNYTIRIV 355 (767)
Q Consensus 345 ~s~~s~sL~V~ 355 (767)
.....+.+.|.
T Consensus 167 ~~~~~~~l~v~ 177 (363)
T 1wio_A 167 KVEFKIDIVVL 177 (363)
T ss_dssp EEEECCEECEE
T ss_pred eEEEEEEEEEe
Confidence 65555555444
No 487
>3uim_A Brassinosteroid insensitive 1-associated receptor; kinase, protein kinase, transferase; HET: SEP TPO ANP; 2.20A {Arabidopsis thaliana} PDB: 3ulz_A* 3tl8_A*
Probab=95.64 E-value=0.0061 Score=64.29 Aligned_cols=45 Identities=18% Similarity=0.268 Sum_probs=41.5
Q ss_pred CCCcccHHHHHhcccCCCCCCCCccccCCCCcceEEe-eCCceEEEec
Q psy12044 427 ESPKYTSVNATSATCMDKVNGGYIIADGHNDMMLYAT-DSGILVATNN 473 (767)
Q Consensus 427 ~~~~fs~~El~~AT~~nnFs~~nlIG~GgfG~VYKG~-~dG~~VA~~~ 473 (767)
..+.|++.++..++ ++|.-..+||+|+||.||+|. .+|+.||++.
T Consensus 16 ~~~~~~~~~~~~~~--~~y~~~~~lg~G~~g~V~~~~~~~~~~vavK~ 61 (326)
T 3uim_A 16 QLKRFSLRELQVAS--DNFSNKNILGRGGFGKVYKGRLADGTLVAVKR 61 (326)
T ss_dssp CCEECCTHHHHTTT--TSSCSTTEEECCSSSEEEEECCSSSCCEEEEE
T ss_pred ccceecHHHHHHHh--hccccceeEecCCCcEEEEEEecCCCEEEEEE
Confidence 44678899999999 999999999999999999999 8999999987
No 488
>3b5h_A Cervical EMMPRIN, HAB18G/CD147; IG-like domain, cell invasion; 2.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4
Probab=95.64 E-value=0.014 Score=55.44 Aligned_cols=72 Identities=19% Similarity=0.361 Sum_probs=50.5
Q ss_pred eeecccccccccccccccCCC--cEEEeecCeeccCCCcccccccceeecccCcceeeeEEEEeeeccCCCCceeEeecc
Q psy12044 264 LEIQEGKNVSLLCKVSAIPEA--KITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCVAEN 341 (767)
Q Consensus 264 ~~v~~G~~vsL~C~a~g~P~p--~itW~~~g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~GtY~CvA~N 341 (767)
..+.+|+.+.|.|.+.+.+.+ .+.|.+++..+...... .....|.+. ...|.|.|.|.+.|
T Consensus 8 ~~v~~G~~v~l~C~~~~~~~p~~~~~W~k~~~~l~~~~~~---------------~~~~~l~i~--~~~d~G~Y~C~~~n 70 (184)
T 3b5h_A 8 TVEDLGSKILLTCSLNDSATEVTGHRWLKGGVVLKEDALP---------------GQKTEFKVD--SDDQWGEYSCVFLP 70 (184)
T ss_dssp EEEEETTEEEEEEEEESCSSCCCEEEEESSSEEEECTTCC---------------CSEEEEEEC--GGGCCEEEEEEEES
T ss_pred EEEecCCCEEEEEECCCCCCCceEEEEEeCCEEeeccccc---------------CCcEEEEEe--chhhCeEEEEEEEC
Confidence 456789999999999988777 89999988776543221 112344444 68899999999998
Q ss_pred CCCCcccceEEEEE
Q psy12044 342 QAGSTSSNYTIRIV 355 (767)
Q Consensus 342 ~~G~s~~s~sL~V~ 355 (767)
. ....+.+.|.
T Consensus 71 ~---~~~~~~l~V~ 81 (184)
T 3b5h_A 71 E---PMGTANIQLH 81 (184)
T ss_dssp T---TSCEEEEEEC
T ss_pred C---cCcEEEEEEe
Confidence 2 2244455554
No 489
>2vol_A Murine IGG FC; FC, zinc, B30.2, nucleus, pryspry, cytoplasm, mouse IGG, zinc-finger, DNA-binding, RNA-binding, tripartite motif (TRIM) protein; HET: NAG MAN GAL FUC; 1.95A {Mus musculus} PDB: 3hkf_A 1i1a_C* 1cqk_A
Probab=95.61 E-value=0.01 Score=58.30 Aligned_cols=76 Identities=20% Similarity=0.284 Sum_probs=53.6
Q ss_pred ecccccccccccccccC----CCcEEEeecCeeccCCCcccccccceeecccCcceeeeEEEEeeeccCCCCceeEeecc
Q psy12044 266 IQEGKNVSLLCKVSAIP----EAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCVAEN 341 (767)
Q Consensus 266 v~~G~~vsL~C~a~g~P----~p~itW~~~g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~GtY~CvA~N 341 (767)
+..|+.+.|.|.+.+.+ .+.+.|.+++..+...... .. .....+.....+.|.|.++..+|.|.|.|.+.|
T Consensus 15 v~~G~~v~L~C~~~g~~~~p~~~~v~W~k~~~~~~~~~~~---~~--~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~~ 89 (207)
T 2vol_A 15 LTITLTPKVTCVVVDISKDDPEVQFSWFVDDVEVHTAQTK---PR--EEQFNSTFRSVSELPIMHQDWLNGKEFKCRVNS 89 (207)
T ss_dssp HSTTSCCEEEEEEEEECTTCCCCEEEEEETTEEECCCEEE---CC--CEETTTEEEEEEEEECCHHHHHTTCCEEEEEEC
T ss_pred hccCCceEEEEEEeCcccCCCceEEEEEECCccccccccC---CC--cCcCCCcEEEEEEEEEehhHcCCCCEEEEEEEc
Confidence 67899999999998874 2489999988655322110 00 001122233456899999999999999999999
Q ss_pred CCCCc
Q psy12044 342 QAGST 346 (767)
Q Consensus 342 ~~G~s 346 (767)
..+..
T Consensus 90 ~~~~~ 94 (207)
T 2vol_A 90 AAFPA 94 (207)
T ss_dssp TTCSS
T ss_pred cCCCC
Confidence 88754
No 490
>1sq2_N Novel antigen receptor; immunoglobulin fold, protein-protein complex, hydrolase/immune system complex; 1.45A {Ginglymostoma cirratum} SCOP: b.1.1.1 PDB: 1t6v_N
Probab=95.61 E-value=0.0081 Score=53.35 Aligned_cols=78 Identities=15% Similarity=0.241 Sum_probs=50.2
Q ss_pred ccceeecccccccccccccccC--CCcEEEeec--CeeccCCCcccccccceeecccCcceeeeEEEEeeeccCCCCcee
Q psy12044 261 TFYLEIQEGKNVSLLCKVSAIP--EAKITWLFD--GVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFV 336 (767)
Q Consensus 261 ~~~~~v~~G~~vsL~C~a~g~P--~p~itW~~~--g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~GtY~ 336 (767)
+..+.+.+|+.++|.|.+.+.+ .+.+.|.++ +..... +.... .++..... .......|.|.++..+|.|.|.
T Consensus 7 p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~g~~~~~--~~~~~-~r~~~~~~-~~~~~~~L~I~~~~~~DsG~Y~ 82 (113)
T 1sq2_N 7 PRSVTKETGESLTINCVLRDASYALGSTCWYRKKSGEGNEE--SISKG-GRYVETVN-SGSKSFSLRINDLTVEDGGTYR 82 (113)
T ss_dssp CSEEEECTTCCEEEEEEECSCSSCCCCEEEEEEETTSCCCE--ECCCB-TTEEEEEE-TTTTEEEEEECSCCGGGCEEEE
T ss_pred CccEEEecCCCEEEEEEECCCcCCCCEEEEEEeCCCCCceE--eEEeC-CCEEEEEe-CCCCEEEEEECCCChhhCEEEE
Confidence 3456788999999999988765 578999884 221110 00001 11111111 1123568999999999999999
Q ss_pred EeeccC
Q psy12044 337 CVAENQ 342 (767)
Q Consensus 337 CvA~N~ 342 (767)
|.+.+.
T Consensus 83 C~~~~~ 88 (113)
T 1sq2_N 83 CGLGVA 88 (113)
T ss_dssp EEECBT
T ss_pred EEEEeC
Confidence 999874
No 491
>3bia_X T-cell immunoglobulin and mucin domain- containing protein 4; beta barrel, immunoglobulin fold, IGV domain, TIM, glycoprotein; HET: TLA; 2.20A {Mus musculus} PDB: 3bi9_X* 3bib_X*
Probab=95.61 E-value=0.035 Score=49.14 Aligned_cols=79 Identities=18% Similarity=0.259 Sum_probs=48.0
Q ss_pred ceeecccccccccccccc--cCCCcEEEeecC-ee------cc-CCC--cccccccceeecccCcceeeeEEEEeeeccC
Q psy12044 263 YLEIQEGKNVSLLCKVSA--IPEAKITWLFDG-VP------IQ-NES--MSASESHAVYSTEEGTEIKKSELLIYNSNID 330 (767)
Q Consensus 263 ~~~v~~G~~vsL~C~a~g--~P~p~itW~~~g-~~------l~-~~s--~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~s 330 (767)
.+.+..|+.++|.|.... .....+.|.+.. .. +. ... ........+.+... .......|.|.+++.+
T Consensus 5 ~v~~~~G~~vtL~C~~~~~~~~~~~v~W~r~~~~~~~~~~~l~~~~~~~~~~~~~~r~~~~~~-~~~~~~sL~I~~v~~~ 83 (116)
T 3bia_X 5 TIIGFLGQPVTLPCHYLSWSQSRNSMCWGKGSCPNSKCNAELLRTDGTRIISRKSTKYTLLGK-VQFGEVSLTISNTNRG 83 (116)
T ss_dssp EEEEETTSCEEECCBCTTCCTTTCEEEEEESSCCSSSCTTEEEEECSSSEEEESSTTEEECSC-GGGTBCCEEECSCCGG
T ss_pred EEEEeeCCcEEEEEEeeCCCCCeEEEEEeeecCCCCCCceEEEEECCcccccccCceEEEecc-CCCCEEEEEEccCChh
Confidence 467789999999999863 234469998854 11 10 000 00000011222111 2334567999999999
Q ss_pred CCCceeEeeccC
Q psy12044 331 DNGTFVCVAENQ 342 (767)
Q Consensus 331 D~GtY~CvA~N~ 342 (767)
|.|.|.|.+...
T Consensus 84 Dsg~Y~C~v~~~ 95 (116)
T 3bia_X 84 DSGVYCCRIEVP 95 (116)
T ss_dssp GCEEEEEEEECS
T ss_pred HCEEEEEEEEcC
Confidence 999999998754
No 492
>4ffy_L DENV1-E111 single chain variable fragment (light; viral envelope proteins, structural genomics, antibody epito flavivirus, niaid; 2.50A {Mus musculus}
Probab=95.60 E-value=0.014 Score=52.87 Aligned_cols=80 Identities=18% Similarity=0.244 Sum_probs=51.4
Q ss_pred ccceeecccccccccccccccC----CCcEEEeecC--e---eccCC-Cc-ccccccceeecccCcceeeeEEEEeeecc
Q psy12044 261 TFYLEIQEGKNVSLLCKVSAIP----EAKITWLFDG--V---PIQNE-SM-SASESHAVYSTEEGTEIKKSELLIYNSNI 329 (767)
Q Consensus 261 ~~~~~v~~G~~vsL~C~a~g~P----~p~itW~~~g--~---~l~~~-s~-~~~~~~~~~~~~~g~~~~~s~L~I~nvs~ 329 (767)
+..+.+.+|+.++|.|.+...+ .+.+.|++.. . .+... .. ......++... .......|.|.++..
T Consensus 8 p~~v~v~~G~~v~L~C~~~~~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~r~~~~---~~~~~~sL~I~~v~~ 84 (126)
T 4ffy_L 8 PASLAVSLGQRATISCRASESVDHYGNSFIYWYQQKPGQPPKLLIYLASNLESGVPARFSGS---GSETDFTLTIDSVET 84 (126)
T ss_dssp CSEEEEETTSCEEEEEEESSCCEETTEECEEEEEECTTSCCEEEEETTTEECTTSCTTEEEE---EETTEEEEEESSCCG
T ss_pred CCeEEEeCCCCEEEEEecCCCcccCCCceEEEEEECCCCCCEEEEEEcCccCCCCCCcEEEe---cCCCEEEEEECCCCH
Confidence 3456788999999999998876 6789998832 1 11110 00 00001111111 122356899999999
Q ss_pred CCCCceeEeeccCC
Q psy12044 330 DDNGTFVCVAENQA 343 (767)
Q Consensus 330 sD~GtY~CvA~N~~ 343 (767)
+|.|.|.|.+.+..
T Consensus 85 ~DsG~Y~C~~~~~~ 98 (126)
T 4ffy_L 85 DDAATYYCQQNNED 98 (126)
T ss_dssp GGCEEEEEEECSSS
T ss_pred HHCEEEEEEEecCC
Confidence 99999999998754
No 493
>2c1o_A IGK-C protein; FAB fragment, enantioselective, finrozole, immune system, antibody, ENA11His antibody, immunoglobulin domain; 2.75A {Mus musculus}
Probab=95.58 E-value=0.0065 Score=61.33 Aligned_cols=77 Identities=17% Similarity=0.351 Sum_probs=52.3
Q ss_pred cccccccccccccccCC--CcEEEeecCeeccCCCcccccccceeecccCcceeeeEEEEeeeccCCCCceeEeeccCCC
Q psy12044 267 QEGKNVSLLCKVSAIPE--AKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCVAENQAG 344 (767)
Q Consensus 267 ~~G~~vsL~C~a~g~P~--p~itW~~~g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~GtY~CvA~N~~G 344 (767)
..|..+.|.|.+.+.+. +.++|.+++..+...... ........++.....+.|.|.++..+|.|.|+|.|.|...
T Consensus 167 ~~g~~v~l~C~~~g~~p~~~~v~W~k~g~~l~~~~~~---~~~~~~~~~g~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~~ 243 (254)
T 2c1o_A 167 LTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLN---SWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTS 243 (254)
T ss_dssp HHTTEEEEEEEEEEEBSSCCEEEEEESSSEECTTEEE---EECCCCTTTCCEEEEEEEEEEHHHHHTCCEEEEEEECTTC
T ss_pred ccCCcEEEEEEEecccCCCcEEEEEECCCcccCccee---ccccccCCCCcEEEEEEEEeccccccCCCeEEEEEEcCCC
Confidence 35778999999988543 459999998776543100 0000111223334567899999999999999999999876
Q ss_pred Cc
Q psy12044 345 ST 346 (767)
Q Consensus 345 ~s 346 (767)
..
T Consensus 244 ~~ 245 (254)
T 2c1o_A 244 TS 245 (254)
T ss_dssp SS
T ss_pred CC
Confidence 53
No 494
>2fbj_H IGA-kappa J539 FAB (heavy chain); immunoglobulin; HET: NAG FUC; 1.95A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1mcp_H 2mcp_H*
Probab=95.57 E-value=0.0073 Score=59.96 Aligned_cols=76 Identities=13% Similarity=0.243 Sum_probs=53.5
Q ss_pred eccccccccccccccc-CC--CcEEEeecCeeccCCCcccccccceeecccCcceeeeEEEEeeeccCCCCceeEeeccC
Q psy12044 266 IQEGKNVSLLCKVSAI-PE--AKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCVAENQ 342 (767)
Q Consensus 266 v~~G~~vsL~C~a~g~-P~--p~itW~~~g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~GtY~CvA~N~ 342 (767)
+..|..+.|.|.+.+. |. +.+.|.+++..+..... . ......+.....+.|.|......|.|.|+|.+.|.
T Consensus 134 ~~~g~~v~L~C~~~g~~P~~~~~v~W~~~~~~~~~~~~-----~-~~~~~~g~~~~~s~L~i~~~~~~d~g~ytC~v~n~ 207 (220)
T 2fbj_H 134 ALSSDPVIIGCLIHDYFPSGTMNVTWGKSGKDITTVNF-----P-PALASGGRYTMSNQLTLPAVECPEGESVKCSVQHD 207 (220)
T ss_dssp SSCCSSEEEEEEEEEEBSCCCEEEEESCCCSSCEEEEC-----C-CEECSSSCEEEEEEEEECGGGSCTTCEEEEEEEET
T ss_pred ccCCCcEEEEEEEEeEECCCcEEEEEecCCEecceEec-----C-ceECCCCCEEEEEEEEECHHHcCCCCeEEEEEEcC
Confidence 4578899999999887 66 79999998765421000 0 11122344445567888888888999999999998
Q ss_pred CCCcc
Q psy12044 343 AGSTS 347 (767)
Q Consensus 343 ~G~s~ 347 (767)
.|...
T Consensus 208 ~~~~~ 212 (220)
T 2fbj_H 208 SNPVQ 212 (220)
T ss_dssp TSCCE
T ss_pred CCceE
Confidence 87644
No 495
>3umt_A SCFV heavy chain and light chain; stability engineering, anthrax, anti-BCLA antibody, immunoglobulin fold (VH and VL domains), antibody, immune S; HET: NHE; 1.80A {Mus musculus} PDB: 1xiw_D
Probab=95.52 E-value=0.019 Score=58.19 Aligned_cols=82 Identities=18% Similarity=0.228 Sum_probs=52.7
Q ss_pred ccceeecccccccccccccccCCCcEEEeec--Ceecc---C-CCccccc-ccceeecccCcceeeeEEEEeeeccCCCC
Q psy12044 261 TFYLEIQEGKNVSLLCKVSAIPEAKITWLFD--GVPIQ---N-ESMSASE-SHAVYSTEEGTEIKKSELLIYNSNIDDNG 333 (767)
Q Consensus 261 ~~~~~v~~G~~vsL~C~a~g~P~p~itW~~~--g~~l~---~-~s~~~~~-~~~~~~~~~g~~~~~s~L~I~nvs~sD~G 333 (767)
+....+.+|+.++|.|.+.+.+.+.+.|++. +.... . ....... ...+... .......|.|.++..+|.|
T Consensus 145 p~~~~v~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~---~~~~~~~L~I~~v~~~D~G 221 (256)
T 3umt_A 145 PSSLSASLGERVSITCRASQDIGSNLNWLQQKPDGTIKRLIYATSSLDSGVPKRFSGS---RSGSDYSLTISSLESEDFV 221 (256)
T ss_dssp CSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTCCEEEEEETTTEECTTSCTTEEEE---EETTEEEEEECSCCGGGCS
T ss_pred CCeEEEECCCCEEEEEEEecCCCcEEEEEEECCCCCcEEEEEeccccCCccCCCEEEe---cCCCEEEEEECCCChhHCE
Confidence 3346788999999999999999899999873 22111 0 0000000 0111111 1122457999999999999
Q ss_pred ceeEeeccCCCC
Q psy12044 334 TFVCVAENQAGS 345 (767)
Q Consensus 334 tY~CvA~N~~G~ 345 (767)
.|.|.+.+..+.
T Consensus 222 ~Y~C~~~~~~~~ 233 (256)
T 3umt_A 222 DYYCLQYASSPP 233 (256)
T ss_dssp EEEEEECSSSSC
T ss_pred EEEEEEeeCCCc
Confidence 999999986543
No 496
>1pew_A JTO2, A lambda-6 type immunoglobulin light chain, domain; beta sheet, immune system; 1.60A {Homo sapiens} SCOP: b.1.1.1 PDB: 1cd0_A 1pw3_A 2cd0_A 2w0k_A 3b5g_A 3bdx_A* 2w0l_A
Probab=95.50 E-value=0.012 Score=51.51 Aligned_cols=80 Identities=14% Similarity=0.251 Sum_probs=49.8
Q ss_pred cceeeccccccccccc-ccccC-CCcEEEeecCeec---c-CCCccccc-ccceeecccCcceeeeEEEEeeeccCCCCc
Q psy12044 262 FYLEIQEGKNVSLLCK-VSAIP-EAKITWLFDGVPI---Q-NESMSASE-SHAVYSTEEGTEIKKSELLIYNSNIDDNGT 334 (767)
Q Consensus 262 ~~~~v~~G~~vsL~C~-a~g~P-~p~itW~~~g~~l---~-~~s~~~~~-~~~~~~~~~g~~~~~s~L~I~nvs~sD~Gt 334 (767)
....+.+|+.++|.|. ..+.+ .+.+.|.+..... . ........ ..++....+ .......|.|.++..+|.|.
T Consensus 8 ~~~~v~~G~~v~L~C~v~~~~~~~~~v~W~r~~~~~~~l~~~~~~~~~~~~~R~~~~~~-~~~~~~~L~I~~v~~~DsG~ 86 (109)
T 1pew_A 8 HSVSESPGKTVTISCTRSSGNIASNYVQWYQQRSAPITVIYEDNQRPSGVPDRFAGSID-RSSNSASLTISGLKTEDEAD 86 (109)
T ss_dssp SEEEECTTSCEEEEEEESSSCGGGSCCEEEEC-CCCEEEEBTTTBCCTTCCTTEEEEEE-TTTTEEEEEECSCCGGGCEE
T ss_pred CCEEEcCCCCEEEEEEeCCCCCCCccEEEEEECCCCcEEEEecCCcCCCCCCcEEEEec-cCCCEEEEEECCCChhhCEE
Confidence 4567889999999999 77665 5789998855211 0 00000000 111111110 12235689999999999999
Q ss_pred eeEeeccC
Q psy12044 335 FVCVAENQ 342 (767)
Q Consensus 335 Y~CvA~N~ 342 (767)
|.|.+.+.
T Consensus 87 Y~C~~~~~ 94 (109)
T 1pew_A 87 YYCQSYDA 94 (109)
T ss_dssp EEEEEEET
T ss_pred EEEEEEeC
Confidence 99999763
No 497
>1z7z_I Intercellular adhesion molecule-1; ICAM-1,kilifi,CD54,human coxsackievirus A21, cryo-electron microscopy,virus-receptor complex, icosahedral virus; HET: NAG NDG; 8.00A {Homo sapiens} SCOP: b.1.1.3 b.1.1.3 b.1.1.4 b.1.1.4 b.1.1.4
Probab=95.49 E-value=0.013 Score=64.53 Aligned_cols=72 Identities=17% Similarity=0.173 Sum_probs=56.5
Q ss_pred ceeecccccccccccccccCCC---cEEEeecCeeccCCCcccccccceeecccCcceeeeEEEEeeeccCCCCceeEee
Q psy12044 263 YLEIQEGKNVSLLCKVSAIPEA---KITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCVA 339 (767)
Q Consensus 263 ~~~v~~G~~vsL~C~a~g~P~p---~itW~~~g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~GtY~CvA 339 (767)
...+.+|+.+.|.|.+.+.+.+ .+.|++++..+...... .....+.|.|.++...|.|.|.|.+
T Consensus 95 ~~~v~~G~~v~L~C~~~g~~~~~~~~v~W~k~g~~l~~~~~~-------------~~~~~~~L~i~~~~~~d~G~Y~C~a 161 (450)
T 1z7z_I 95 PSWQPVGKNLTLRCQVEGGAPRANLTVVLLRGEKELKREPAV-------------GEPAEVTTTVLVRRDHHGANFSCRT 161 (450)
T ss_dssp CSEECTTSEEEEEEEEECCBCGGGEEEEEEETTEEEEEEECC-------------TTTEEEEEEEECCSSCSSCEEEEEE
T ss_pred CceEeeCCeEEEEEEecCCCCCcCcEEEEeeCCEEeeccccc-------------ccccceEEEEEeeccccCceEEEEE
Confidence 3567789999999999999888 89999998776432211 0122458999999999999999999
Q ss_pred ccCCCCcc
Q psy12044 340 ENQAGSTS 347 (767)
Q Consensus 340 ~N~~G~s~ 347 (767)
.|..|...
T Consensus 162 ~n~~g~~~ 169 (450)
T 1z7z_I 162 ELDLRPQG 169 (450)
T ss_dssp EEECGGGT
T ss_pred EcccCCCC
Confidence 99987654
No 498
>3o3u_N Maltose-binding periplasmic protein, advanced Gly END product-specific receptor; RAGE, AGER, scavenger receptor; HET: MLR; 1.50A {Escherichia coli} PDB: 3s59_A 3s58_A 3cjj_A 2l7u_A* 2e5e_A
Probab=95.49 E-value=0.015 Score=66.43 Aligned_cols=91 Identities=21% Similarity=0.399 Sum_probs=60.1
Q ss_pred eeecccccccccccc-cccCCCcEEEeecCeeccCCCccccc-ccceeecccCcceeeeEEEEeeeccCCCCceeEeecc
Q psy12044 264 LEIQEGKNVSLLCKV-SAIPEAKITWLFDGVPIQNESMSASE-SHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCVAEN 341 (767)
Q Consensus 264 ~~v~~G~~vsL~C~a-~g~P~p~itW~~~g~~l~~~s~~~~~-~~~~~~~~~g~~~~~s~L~I~nvs~sD~GtY~CvA~N 341 (767)
..+..|+.++|.|.+ .+.|.+.+.|.+++..+......... ... +.........+.|.|.+++.+|.|.|+|.+.|
T Consensus 376 ~~~~~G~~v~L~C~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~--~~~r~~~~~~~~L~i~~v~~~D~G~Y~C~~~n 453 (581)
T 3o3u_N 376 ITARIGEPLVLKCKGAPKKPPQRLEWKLNTGRTEAWKVLSPQGGGP--WDSVARVLPNGSLFLPAVGIQDEGIFRCQAMN 453 (581)
T ss_dssp EEEETTSCEEECCTTCCSSSSCEEEEEEEETTSSSCEECCSCCSSG--GGGTSEECTTSCEEESSCCGGGCEEEEEEEEC
T ss_pred cceecCCcEEEeeeecCCCCCceEEEEEcCCeeEEEEecccCCCCC--cCCcEEEcCCceEEEeccccccCeEEEEEEEc
Confidence 567889999999999 78899999999975422111000000 000 00000111234799999999999999999999
Q ss_pred CCCCc-ccceEEEEEe
Q psy12044 342 QAGST-SSNYTIRIVL 356 (767)
Q Consensus 342 ~~G~s-~~s~sL~V~~ 356 (767)
..|.. ...+.+.|..
T Consensus 454 ~~~~~~~~~~~l~V~~ 469 (581)
T 3o3u_N 454 RNGKETKSNYRVRVYQ 469 (581)
T ss_dssp TTSCEEEEEEEEEEEB
T ss_pred CCCceeEEEEEEEEEc
Confidence 98877 5566666654
No 499
>1p6f_A NKP46, natural cytotoxicity triggering receptor 1; natural cytotoxicity receptor, NK cell receptor, immunoglobulin fold, immune system; 2.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4
Probab=95.47 E-value=0.013 Score=59.60 Aligned_cols=103 Identities=14% Similarity=0.159 Sum_probs=0.0
Q ss_pred eecccccccccccccccCCCcEEEeecCeeccCCCcccccccceeecccCcceeeeEEEEeeeccCCCCceeEeeccCC-
Q psy12044 265 EIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCVAENQA- 343 (767)
Q Consensus 265 ~v~~G~~vsL~C~a~g~P~p~itW~~~g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~GtY~CvA~N~~- 343 (767)
.+.+|+.++|.|.+.+.+. .+.|++++..+...... ......|.|.++..+|.|.|.|.+.|..
T Consensus 112 ~v~~G~~vtL~C~~~~~~~-~~~w~k~g~~~~~~~~~--------------~~~~~~l~I~~v~~~d~G~Y~C~a~n~~~ 176 (242)
T 1p6f_A 112 EVISGEKVTFYCRLDTATS-MFLLLKEGRSSHVQRGY--------------GKVQAEFPLGPVTTAHRGTYRCFGSYNNH 176 (242)
T ss_dssp EEETTCEEEEEEECTTSCS-EEEEEECSSSCEEEEEE--------------CSSEEEEEEEECCGGGCEEEEEEEEEETT
T ss_pred ccCCCCcEEEEEecCCCCC-EEEEEECCCccCccccC--------------CCceEEEEeCCCccccCEEEEEEEECCCC
Q ss_pred --CCcccceEEEEEeecccceeecccc-------------------------ceeeeEEEeeehhh
Q psy12044 344 --GSTSSNYTIRIVLKEENVEVVTVFP-------------------------LEYVLIVSGIISVC 382 (767)
Q Consensus 344 --G~s~~s~sL~V~~~~~p~~~~~~~~-------------------------~~~~~iIigivv~l 382 (767)
......+.|.|.............+ ......++.+.++.
T Consensus 177 ~~s~~S~~~~l~V~~~~~~P~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nl~r~~~a~ 242 (242)
T 1p6f_A 177 AWSFPSEPVKLLVTGDIENTSLAPEDPTFPADTWGTYLLTTETGLQKDHALWDHTAQNLLRMGLAF 242 (242)
T ss_dssp EECCCCCCEEEEEEC---------------------------------------------------
T ss_pred cccCCCCCEEEEEeccCCCCcccCcCCCccccccccccccccCCCCCCCCCccchheeeeEEEecC
No 500
>3s96_B 3B5H10 FAB light chain; huntingtin, immune system; 1.90A {Mus musculus} PDB: 2qhr_L 3ffd_B 4dcq_A
Probab=95.46 E-value=0.0044 Score=60.76 Aligned_cols=77 Identities=17% Similarity=0.363 Sum_probs=49.8
Q ss_pred ecccccccccccccc-cCCC-cEEEeecCeeccCCCcccccccceeecccCcceeeeEEEEeeeccCCCCceeEeeccCC
Q psy12044 266 IQEGKNVSLLCKVSA-IPEA-KITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCVAENQA 343 (767)
Q Consensus 266 v~~G~~vsL~C~a~g-~P~p-~itW~~~g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~GtY~CvA~N~~ 343 (767)
...+..+.|.|.+.+ .|.+ .+.|.+++..+....... ......+.....+.|.+......|.|.|+|.|.|..
T Consensus 133 ~~~~~~v~L~C~~~g~~p~~~~v~W~k~g~~l~~~~~~~-----~~~~~~~~~~~~s~l~i~~~~~~d~g~Y~C~a~n~~ 207 (218)
T 3s96_B 133 ELKENKATLVCLISNFSPSGVTVAWKANGTPITQGVDTS-----NPTKEGNKFMASSFLHLTSDQWRSHNSFTCQVTHEG 207 (218)
T ss_dssp HHHTTEEEEEEEEEEEBSSCCEEEEEETTEEC-------------------CEEEEEEEEEEHHHHHTCSCEEEEEEETT
T ss_pred cccCCcEEEEEEECcccCCCeEEEEEECCEECcCceecC-----cccccCCcEEEEEEEEEeHHHccCCCeEEEEEEeCC
Confidence 345678999999988 5666 899999988775421110 011113333445668888888889999999999987
Q ss_pred CCcc
Q psy12044 344 GSTS 347 (767)
Q Consensus 344 G~s~ 347 (767)
+...
T Consensus 208 ~~~~ 211 (218)
T 3s96_B 208 DTVE 211 (218)
T ss_dssp EEEE
T ss_pred Cccc
Confidence 6543
Done!