RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy12044
(767 letters)
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein,
neurite growth regulation; HET: NAG BMA; 2.00A {Mus
musculus}
Length = 361
Score = 287 bits (735), Expect = 2e-90
Identities = 80/351 (22%), Positives = 136/351 (38%), Gaps = 33/351 (9%)
Query: 15 VSACPTSCICKWKGGKQTVECVNKSLITVVEGMDPNTQVLDYTGNNLKTLHNEKFQKMGL 74
V +CP +C+C + C + L V + + T +LD + NNL L E L
Sbjct: 9 VVSCPANCLC----ASNILSCSKQQLPNVPQSLPSYTALLDLSHNNLSRLRAEWTPT-RL 63
Query: 75 VNLQKIYLSRCRISVIDSKAFRGLTNLVDLDFSHNVLQTVPSDTFPDYPSLMKLTLSGNP 134
NL + LS ++ I S+AF + NL LD S N L T+ F D +L L L N
Sbjct: 64 TNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNH 123
Query: 135 IKQIKTGAFQPLSYLVTLELSKCGIEVIEDAAFVGLD---SLEWLKLDNNKITTISGSNI 191
I + AF+ ++ L L LS+ I + L L L +NK+ + +++
Sbjct: 124 IVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDL 183
Query: 192 LPT---GLHGIDLHHNPWTCDCLLIGLRRWLESTKTPMAID----PICSVPPRLSSVTIK 244
+G+ LH+NP CDC L L + + +D C +L ++
Sbjct: 184 QKLPAWVKNGLYLHNNPLECDCKLYQLFSHWQYRQLSSVMDFQEDLYCMHSKKLHNIF-- 241
Query: 245 QLSIDELACEPQITPSTFYLEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASE 304
S+D C E G +++ C K+ + ++
Sbjct: 242 --SLDFFNCSE---YKESAWEAHLGDTLTIRCDTKQQGMTKVWVSPSNEQVLSQG----- 291
Query: 305 SHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCVAENQAGSTSSNYTIRIV 355
S+ S G L ++D G + C A + + + + +++
Sbjct: 292 SNGSVSVRNGD------LFFKKVQVEDGGVYTCYAMGETFNETLSVELKVY 336
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG
containing, ligand binding protein,membr protein; HET:
NAG MAN; 2.70A {Homo sapiens}
Length = 477
Score = 216 bits (551), Expect = 2e-62
Identities = 69/337 (20%), Positives = 118/337 (35%), Gaps = 44/337 (13%)
Query: 49 PNTQVLDYTGNNLKTLHNEKFQKMGLVNLQKIYLSRCRISVIDSKAFRGLTNLVDLDFSH 108
+ + L NL ++ E L L + L I+ I +F+ L L L+ SH
Sbjct: 152 NSLEQLTLEKCNLTSIPTEALS--HLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISH 209
Query: 109 NVLQTVPSDTFPDYPSLMKLTLSGNPIKQIKTGAFQPLSYLVTLELSKCGIEVIEDAAFV 168
+ +L L+++ + + A + L YL L LS I IE +
Sbjct: 210 WPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLH 269
Query: 169 GLDSLEWLKLDNNKITTI----------------SGSNI--LPTG-------LHGIDLHH 203
L L+ ++L ++ + SG+ + L L + L
Sbjct: 270 ELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDS 329
Query: 204 NPWTCDCLLIGLRRWLESTKTPMAIDPICSVPPRLSSVTIKQLSIDELACE------PQI 257
NP CDC L+ + R P C+ P + K L
Sbjct: 330 NPLACDCRLLWVFRRR-WRLNFNRQQPTCATPEFVQGKEFKDFPDVLLPNYFTCRRARIR 388
Query: 258 TPSTFYLEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEI 317
+ + EG V +C+ P I WL + +SA + + +GT
Sbjct: 389 DRKAQQVFVDEGHTVQFVCRADGDPPPAILWLSP----RKHLVSAKSNGRLTVFPDGT-- 442
Query: 318 KKSELLIYNSNIDDNGTFVCVAENQAGSTSSNYTIRI 354
L + + + DNGT++C+A N G+ S + +
Sbjct: 443 ----LEVRYAQVQDNGTYLCIAANAGGNDSMPAHLHV 475
Score = 179 bits (457), Expect = 2e-49
Identities = 62/208 (29%), Positives = 95/208 (45%), Gaps = 7/208 (3%)
Query: 16 SACPTSCICKWKGGKQTVECVNKSLITVVEGMDPNTQVLDYTGNNLKTLHNEKFQKMGLV 75
+ CP C C + + V C K + V EG+ T++LD N +KTL+ ++F
Sbjct: 1 TGCPPRCECSAQD--RAVLCHRKRFVAVPEGIPTETRLLDLGKNRIKTLNQDEFA--SFP 56
Query: 76 NLQKIYLSRCRISVIDSKAFRGLTNLVDLDFSHNVLQTVPSDTFPDYPSLMKLTLSGNPI 135
+L+++ L+ +S ++ AF L NL L N L+ +P F +L KL +S N I
Sbjct: 57 HLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKI 116
Query: 136 KQIKTGAFQPLSYLVTLELSKCGIEVIEDAAFVGLDSLEWLKLDNNKITTISGSNILP-T 194
+ FQ L L +LE+ + I AF GL+SLE L L+ +T+I +
Sbjct: 117 VILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLH 176
Query: 195 GLHGIDLHHNPWTC--DCLLIGLRRWLE 220
GL + L H D L R
Sbjct: 177 GLIVLRLRHLNINAIRDYSFKRLYRLKV 204
Score = 135 bits (341), Expect = 6e-34
Identities = 39/161 (24%), Positives = 70/161 (43%), Gaps = 5/161 (3%)
Query: 49 PNTQVLDYTGNNLKTLHNEKFQKMGLVNLQKIYLSRCRISVIDSKAFRGLTNLVDLDFSH 108
N LD + N + L + FQ L NL+ + + + I +AF GL +L L
Sbjct: 104 SNLTKLDISENKIVILLDYMFQ--DLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEK 161
Query: 109 NVLQTVPSDTFPDYPSLMKLTLSGNPIKQIKTGAFQPLSYLVTLELSK-CGIEVIEDAAF 167
L ++P++ L+ L L I I+ +F+ L L LE+S ++ +
Sbjct: 162 CNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCL 221
Query: 168 VGLDSLEWLKLDNNKITTISGSNILP-TGLHGIDLHHNPWT 207
GL +L L + + +T + + L ++L +NP +
Sbjct: 222 YGL-NLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPIS 261
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4
complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB:
3zyo_A* 3zyn_A* 2dl9_A
Length = 452
Score = 214 bits (548), Expect = 3e-62
Identities = 77/311 (24%), Positives = 125/311 (40%), Gaps = 45/311 (14%)
Query: 49 PNTQVLD-YTGNNLKTLHNEKFQKMGLVNLQKIYLSRCRISVIDSKAFRGLTNLVDLDFS 107
P+ LD L+ + F+ GL NL+ + L C I + L L +L+
Sbjct: 171 PSLMRLDLGELKKLEYISEGAFE--GLFNLKYLNLGMCNIKDMP--NLTPLVGLEELE-- 224
Query: 108 HNVLQTVPSDTFPDYPSLMKLTLSGNPIKQIKTGAFQPLSYLVTLELSKCGIEVIEDAAF 167
+SGN +I+ G+F LS L L + + +IE AF
Sbjct: 225 ----------------------MSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAF 262
Query: 168 VGLDSLEWLKLDNNKITTISGSNILP-TGLHGIDLHHNPWTCDCLLIGLRRWL-ESTKTP 225
GL SL L L +N ++++ P L + LHHNPW CDC ++ L WL E T
Sbjct: 263 DGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWNCDCDILWLAWWLREYIPTN 322
Query: 226 MAIDPICSVPPRLSSVTIKQLSIDELACE-PQITPSTFYLEIQEGKNVSLLCKVSAIPEA 284
C P + + ++ C P I + L I EG+ L C+ P +
Sbjct: 323 STCCGRCHAPMHMRGRYLVEVDQASFQCSAPFIMDAPRDLNISEGRMAELKCRTP--PMS 380
Query: 285 KITWLFD-GVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCVAENQA 343
+ WL G + + S + +GT L + + D G + C+ N A
Sbjct: 381 SVKWLLPNGTVLSHASRHPR----ISVLNDGT------LNFSHVLLSDTGVYTCMVTNVA 430
Query: 344 GSTSSNYTIRI 354
G+++++ + +
Sbjct: 431 GNSNASAYLNV 441
Score = 136 bits (344), Expect = 2e-34
Identities = 53/225 (23%), Positives = 79/225 (35%), Gaps = 37/225 (16%)
Query: 1 MMYWIFLIATII-----KIVSACPTSCICKWKGGKQTVECVNKSLITVVEGMDPNTQVLD 55
+ ++++ I CP+ C C + V C + L V +G+ NT+ L+
Sbjct: 24 LTAQVWILCAAIAAAASAGPQNCPSVCSCSNQF--SKVVCTRRGLSEVPQGIPSNTRYLN 81
Query: 56 YTGNNLKTLHNEKFQKMGLVNLQKIYLSRCRISVIDSKAFRGLTNLVDLDFSHNVLQTVP 115
L I +I + FR L +L L N ++ +
Sbjct: 82 --------------------------LMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIE 115
Query: 116 SDTFPDYPSLMKLTLSGNPIKQIKTGAFQPLSYLVTLELSKCGIEVIEDAAFVGLDSLEW 175
F SL L L N + I +GAF+ LS L L L IE I AF + SL
Sbjct: 116 VGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMR 175
Query: 176 LKL-DNNKITTISGSNILP--TGLHGIDLHHNPWTCDCLLIGLRR 217
L L + K+ IS L ++L L L
Sbjct: 176 LDLGELKKLEYIS-EGAFEGLFNLKYLNLGMCNIKDMPNLTPLVG 219
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse;
HET: NAG BMA MAN; 3.25A {Homo sapiens}
Length = 440
Score = 208 bits (532), Expect = 3e-60
Identities = 74/310 (23%), Positives = 121/310 (39%), Gaps = 40/310 (12%)
Query: 49 PNTQVLD-YTGNNLKTLHNEKFQKMGLVNLQKIYLSRCRISVIDSKAFRGLTNLVDLDFS 107
P+ + LD L + F+ GL NL+ + L+ C + I L L +LD S
Sbjct: 160 PSLRRLDLGELKRLSYISEGAFE--GLSNLRYLNLAMCNLREIP--NLTPLIKLDELDLS 215
Query: 108 HNVLQTVPSDTFPDYPSLMKLTLSGNPIKQIKTGAFQPLSYLVTLELSKCGIEVIEDAAF 167
N L + +F L KL + + I+ I+ AF L LV + L+ + ++ F
Sbjct: 216 GNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLF 275
Query: 168 VGLDSLEWLKLDNNKITTISGSNILPTGLHGIDLHHNPWTCDCLLIGLRRWL-ESTKTPM 226
L LE + LHHNPW C+C ++ L W+ + +
Sbjct: 276 TPLHHLERI-----------------------HLHHNPWNCNCDILWLSWWIKDMAPSNT 312
Query: 227 AIDPICSVPPRLSSVTIKQLSIDELACE-PQITPSTFYLEIQEGKNVSLLCKVSAIPEAK 285
A C+ PP L I +L + C P I L + EG L C+ S
Sbjct: 313 ACCARCNTPPNLKGRYIGELDQNYFTCYAPVIVEPPADLNVTEGMAAELKCRAST-SLTS 371
Query: 286 ITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCVAENQAGS 345
++W+ P + + +GT L N + D G + C+ N G+
Sbjct: 372 VSWI---TPNGTVMTHGAYKVRIAVLSDGT------LNFTNVTVQDTGMYTCMVSNSVGN 422
Query: 346 TSSNYTIRIV 355
T+++ T+ +
Sbjct: 423 TTASATLNVT 432
Score = 176 bits (447), Expect = 3e-48
Identities = 61/194 (31%), Positives = 93/194 (47%), Gaps = 6/194 (3%)
Query: 15 VSACPTSCICKWKGGKQTVECVNKSLITVVEGMDPNTQVLDYTGNNLKTLHNEKFQKMGL 74
CP+ C C + V CV K+L V +G+ NT++L+ N ++ + F+ L
Sbjct: 32 AQTCPSVCSCSNQF--SKVICVRKNLREVPDGISTNTRLLNLHENQIQIIKVNSFK--HL 87
Query: 75 VNLQKIYLSRCRISVIDSKAFRGLTNLVDLDFSHNVLQTVPSDTFPDYPSLMKLTLSGNP 134
+L+ + LSR I I+ AF GL NL L+ N L T+P+ F L +L L NP
Sbjct: 88 RHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNP 147
Query: 135 IKQIKTGAFQPLSYLVTLELSKC-GIEVIEDAAFVGLDSLEWLKLDNNKITTISGSNILP 193
I+ I + AF + L L+L + + I + AF GL +L +L L + I L
Sbjct: 148 IESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIPNLTPLI 207
Query: 194 TGLHGIDLHHNPWT 207
L +DL N +
Sbjct: 208 K-LDELDLSGNHLS 220
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition,
OMGP, MAG, NOGO- signal transduction, neuronal
regeneration, ligand binding; HET: NDG MAN NAG BMA;
1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Length = 285
Score = 191 bits (488), Expect = 1e-55
Identities = 74/284 (26%), Positives = 110/284 (38%), Gaps = 50/284 (17%)
Query: 18 CPTSCICKWKGGKQTVECVNKSLITVVEGMDPNTQ------------------------V 53
CP +C+C + K T C + L V G+ +Q +
Sbjct: 2 CPGACVCYNEP-KVTTSCPQQGLQAVPVGIPAASQRIFLHGNRISHVPAASFRACRNLTI 60
Query: 54 LDYTGNNLKTLHNEKFQKM-----------------------GLVNLQKIYLSRCRISVI 90
L N L + F + GL L ++L RC + +
Sbjct: 61 LWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQEL 120
Query: 91 DSKAFRGLTNLVDLDFSHNVLQTVPSDTFPDYPSLMKLTLSGNPIKQIKTGAFQPLSYLV 150
FRGL L L N LQ +P DTF D +L L L GN I + AF+ L L
Sbjct: 121 GPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLD 180
Query: 151 TLELSKCGIEVIEDAAFVGLDSLEWLKLDNNKITTISGSNILP-TGLHGIDLHHNPWTCD 209
L L + + + AF L L L L N ++ + + P L + L+ NPW CD
Sbjct: 181 RLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCD 240
Query: 210 CLLIGLRRWLESTKTPMAIDPICSVPPRLSSVTIKQLSIDELAC 253
C L WL+ + + CS+P RL+ +K+L+ ++L
Sbjct: 241 CRARPLWAWLQK-FRGSSSEVPCSLPQRLAGRDLKRLAANDLQG 283
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like
receptor, MD-2, LPS, leucine-rich repeat, glycoprotein,
immune response; HET: NAG BMA FUL; 1.90A {Eptatretus
burgeri}
Length = 306
Score = 177 bits (451), Expect = 3e-50
Identities = 49/206 (23%), Positives = 84/206 (40%), Gaps = 8/206 (3%)
Query: 49 PNTQVLDYTGNNLKTLHNEK-FQKMGLVNLQKIYLSRCRISVIDSKAFRGLTNLVDLDFS 107
+ LD+ +NLK + F L NL + +S V + F GL++L L +
Sbjct: 101 EQLEHLDFQHSNLKQMSEFSVFL--SLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMA 158
Query: 108 HN-VLQTVPSDTFPDYPSLMKLTLSGNPIKQIKTGAFQPLSYLVTLELSKCGIEVIEDAA 166
N + D F + +L L LS ++Q+ AF LS L L +S ++
Sbjct: 159 GNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFP 218
Query: 167 FVGLDSLEWLKLDNNKITTISGSNI--LPTGLHGIDLHHNPWTCDCLLIGLRRWLESTKT 224
+ L+SL+ L N I T + P+ L ++L N + C C +W++ +
Sbjct: 219 YKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQ 278
Query: 225 --PMAIDPICSVPPRLSSVTIKQLSI 248
C+ P + + L+I
Sbjct: 279 LLVEVERMECATPSDKQGMPVLSLNI 304
Score = 116 bits (292), Expect = 1e-28
Identities = 38/194 (19%), Positives = 67/194 (34%), Gaps = 37/194 (19%)
Query: 18 CPTSCICKWKGGKQTVECVNKSLITVVEGMDPNTQVLDYTGNNLKTLHNEKFQKMGLVNL 77
CP+ C C + C +K L +V G+ + L+
Sbjct: 1 CPSRCSCS----GTEIRCNSKGLTSVPTGIPSSATRLE---------------------- 34
Query: 78 QKIYLSRCRISVIDSKAFRGLTNLVDLDFSHNVLQT--VPSDTFPDYPSLMKLTLSGNPI 135
L ++ + F LT L L S N L S + SL L LS N +
Sbjct: 35 ----LESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGV 90
Query: 136 KQIKTGAFQPLSYLVTLELSKCGIEVI-EDAAFVGLDSLEWLKLDNNKITTISGSNILP- 193
+ + F L L L+ ++ + E + F+ L +L +L + + + I
Sbjct: 91 ITM-SSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAF-NGIFNG 148
Query: 194 -TGLHGIDLHHNPW 206
+ L + + N +
Sbjct: 149 LSSLEVLKMAGNSF 162
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis,
glycoprotein, secreted, chemotaxis, LRR structural
protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Length = 220
Score = 165 bits (419), Expect = 7e-47
Identities = 64/246 (26%), Positives = 96/246 (39%), Gaps = 31/246 (12%)
Query: 17 ACPTSCICKWKGGKQTVECVNKSLITVVEGMDPNTQVLDYTGNNLKTL-HNEKFQKMGLV 75
ACP C C+ TV+C N+ L + E + T L N L F+ L
Sbjct: 4 ACPEKCRCEGT----TVDCSNQKLNKIPEHIPQYTAELRLNNNEFTVLEATGIFK--KLP 57
Query: 76 NLQKIYLSRCRISVIDSKAFRGLTNLVDLDFSHNVLQTVPSDTFPDYPSLMKLTLSGNPI 135
L+KI S +I+ I+ AF G + + ++ + N L+ V F SL L L N I
Sbjct: 58 QLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRI 117
Query: 136 KQIKTGAFQPLSYLVTLELSKCGIEVIEDAAFVGLDSLEWLKLDNNKITTISGSNILPTG 195
+ +F LS + L L I + AF L SL
Sbjct: 118 TCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLST-------------------- 157
Query: 196 LHGIDLHHNPWTCDCLLIGLRRWLESTKTPMAIDPICSVPPRLSSVTIKQLSIDELACEP 255
++L NP+ C+C L L WL K + +P C P L + I+ ++I + C+
Sbjct: 158 ---LNLLANPFNCNCYLAWLGEWLRK-KRIVTGNPRCQKPYFLKEIPIQDVAIQDFTCDD 213
Query: 256 QITPST 261
Sbjct: 214 AHHHHH 219
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA,
receptor-ligand complex transferase; HET: NAG NDG MAN
BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Length = 347
Score = 166 bits (421), Expect = 8e-46
Identities = 46/338 (13%), Positives = 86/338 (25%), Gaps = 92/338 (27%)
Query: 18 CPTSCICKWKGGKQTVECVNKSLITVVEGMDPNTQVLDYTGNNLKTLHNEKFQKMGLVNL 77
CP +C G + C + +
Sbjct: 1 CPDACCPH---GSSGLRCTRDGALDSLHH------------------------------- 26
Query: 78 QKIYLSRCRISVIDSKAFRGLTNLVDLDFSHNVLQTVPSDTFPDYPSLMKLTLSGNPIKQ 137
G NL +L + ++
Sbjct: 27 -----------------LPGAENLTELYIENQ-----------------------QHLQH 46
Query: 138 IKTGAFQPLSYLVTLELSKCGIEVIEDAAFVGLDSLEWLKLDNNKITTISGSNILPTGLH 197
++ + L L L + K G+ + AF L L L N + ++S + L
Sbjct: 47 LELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLSLQ 106
Query: 198 GIDLHHNPWTCDCLLIGLRRWLESTKTPMAIDPICSVPPRLSSVTIKQLSIDELACEPQI 257
+ L NP C C L L+RW E + + + P +
Sbjct: 107 ELVLSGNPLHCSCALRWLQRWEEEGLG-----GVPEQKLQCHGQGPLAHMPNASCGVPTL 161
Query: 258 TPSTFYLEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEI 317
+ G +V L C+V + W+ + + + +
Sbjct: 162 KVQVPNASVDVGDDVLLRCQVEGRGLEQAGWILTELEQSA------------TVMKSGGL 209
Query: 318 KKSELLIYN-SNIDDNGTFVCVAENQAGSTSSNYTIRI 354
L + N ++ + C AEN G + + +
Sbjct: 210 PSLGLTLANVTSDLNRKNVTCWAENDVGRAEVSVQVNV 247
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor
complex, developmental protein, domain, roundabout,
chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Length = 220
Score = 149 bits (379), Expect = 2e-41
Identities = 60/240 (25%), Positives = 89/240 (37%), Gaps = 32/240 (13%)
Query: 17 ACPTSCICKWKGGKQTVECVNKSLITVVEGMDPNTQVLDYTGNNLKTLHNEKFQKMGLVN 76
CP +C C V+C K L + + + N
Sbjct: 4 HCPAACTCS----NNIVDCRGKGLTEIPTNLPETITEIRLEQN----------------- 42
Query: 77 LQKIYLSRCRISVIDSKAFRGLTNLVDLDFSHNVLQTVPSDTFPDYPSLMKLTLSGNPIK 136
I VI AF L +D S+N + + D F SL L L GN I
Sbjct: 43 ---------TIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKIT 93
Query: 137 QIKTGAFQPLSYLVTLELSKCGIEVIEDAAFVGLDSLEWLKLDNNKITTISGSNILP-TG 195
++ F+ L L L L+ I + AF L +L L L +NK+ TI+ P
Sbjct: 94 ELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRA 153
Query: 196 LHGIDLHHNPWTCDCLLIGLRRWLESTKTPMAIDPICSVPPRLSSVTIKQLSIDELACEP 255
+ + L NP+ CDC L L +L + + C+ P RL++ I Q+ + C
Sbjct: 154 IQTMHLAQNPFICDCHLKWLADYLHTNPIETS-GARCTSPRRLANKRIGQIKSKKFRCSA 212
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors,
glycocalicin, leucine rich repeats, BLOO clotting; HET:
NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB:
1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A*
1p8v_A* 1u0n_D 3p72_A
Length = 290
Score = 149 bits (378), Expect = 2e-40
Identities = 53/223 (23%), Positives = 81/223 (36%), Gaps = 25/223 (11%)
Query: 17 ACPTSCICKWKGGKQTVECVNKSLITVVEGMDPNTQVLDYTGNNLKTLHNEKFQKM---- 72
C S + V C ++L + + +T +L + N L T
Sbjct: 3 ICEVSKVAS----HLEVNCDKRNLTALPPDLPKDTTILHLSENLLYTFSLATLMPYTRLT 58
Query: 73 ----------------GLVNLQKIYLSRCRISVIDSKAFRGLTNLVDLDFSHNVLQTVPS 116
L L + LS ++ + + L L LD S N L ++P
Sbjct: 59 QLNLDRAELTKLQVDGTLPVLGTLDLSHNQLQSLPL-LGQTLPALTVLDVSFNRLTSLPL 117
Query: 117 DTFPDYPSLMKLTLSGNPIKQIKTGAFQPLSYLVTLELSKCGIEVIEDAAFVGLDSLEWL 176
L +L L GN +K + G P L L L+ + + GL++L+ L
Sbjct: 118 GALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTL 177
Query: 177 KLDNNKITTISGSNILPTGLHGIDLHHNPWTCDCLLIGLRRWL 219
L N + TI L LH NPW C+C ++ RRWL
Sbjct: 178 LLQENSLYTIPKGFFGSHLLPFAFLHGNPWLCNCEILYFRRWL 220
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG;
2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Length = 680
Score = 154 bits (390), Expect = 3e-39
Identities = 54/220 (24%), Positives = 83/220 (37%), Gaps = 16/220 (7%)
Query: 49 PNTQVLDYTGNNLKTLHNEKFQKMGLVNLQKIYLSRCRISVIDSKAFRGLTNLVDLDFSH 108
P+ Q L LK + + L NL + LS I+ I+ GL L LD H
Sbjct: 454 PSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQH 513
Query: 109 NVLQTVPSDTFPDYP--------SLMKLTLSGNPIKQIKTGAFQPLSYLVTLELSKCGIE 160
N L + P P L L L N +I F+ L L ++L +
Sbjct: 514 NNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLN 573
Query: 161 VIEDAAFVGLDSLEWLKLDNNKITTISGSNILP--TGLHGIDLHHNPWTCDC-LLIGLRR 217
+ + F SL+ L L N IT++ P L +D+ NP+ C C +
Sbjct: 574 TLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCESIAWFVN 633
Query: 218 WLESTKTP---MAIDPICSVPPRLSSVTIKQLSIDELACE 254
W+ T T ++ +C+ PP + D +C+
Sbjct: 634 WINETHTNIPELSSHYLCNTPPHYHGFPV--RLFDTSSCK 671
Score = 140 bits (355), Expect = 8e-35
Identities = 48/178 (26%), Positives = 78/178 (43%), Gaps = 5/178 (2%)
Query: 31 QTVECVNKSLITVVEGMDPNTQVLDYTGNNLKTLHNEKFQKMGLVNLQKIYLSRCRISVI 90
+ +C + L V + + N VL+ T N L+ L F L + + IS +
Sbjct: 7 EVADCSHLKLTQVPDDLPTNITVLNLTHNQLRRLPAANFT--RYSQLTSLDVGFNTISKL 64
Query: 91 DSKAFRGLTNLVDLDFSHNVLQTVPSDTFPDYPSLMKLTLSGNPIKQIKTGAFQPLSYLV 150
+ + + L L L+ HN L + TF +L +L L N I++IK F L+
Sbjct: 65 EPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLI 124
Query: 151 TLELSKCGIEVIEDAAFVGLDSLEWLKLDNNKITTISG---SNILPTGLHGIDLHHNP 205
TL+LS G+ + V L++L+ L L NNKI + + L ++L N
Sbjct: 125 TLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQ 182
Score = 117 bits (295), Expect = 2e-27
Identities = 44/162 (27%), Positives = 76/162 (46%), Gaps = 6/162 (3%)
Query: 49 PNTQVLDYTGN--NLKTLHNEKFQKMGLVNLQKIYLSRCRISVIDSKAFRGLTNLVDLDF 106
N + L + + +L+TL NE F + L + L++ +IS I+S AF L +L LD
Sbjct: 353 INLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDL 412
Query: 107 SHNVL-QTVPSDTFPDYPSLMKLTLSGNPIKQIKTGAFQPLSYLVTLELSKCGIEVIEDA 165
N + Q + + ++ ++ LS N Q+ +F + L L L + ++ ++ +
Sbjct: 413 GLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSS 472
Query: 166 --AFVGLDSLEWLKLDNNKITTISGSNILP-TGLHGIDLHHN 204
F L +L L L NN I I+ + L +DL HN
Sbjct: 473 PSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHN 514
Score = 115 bits (289), Expect = 1e-26
Identities = 37/167 (22%), Positives = 70/167 (41%), Gaps = 14/167 (8%)
Query: 52 QVLDYTGNNLKTLHNEKFQKMGLVNLQKIYLSRCRISVIDSKAFRGLTNLVDLDFSHNVL 111
+ L + + L T N F + NL + LS ++V+ + +F L L +N +
Sbjct: 225 RNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNI 284
Query: 112 QTVPSDTFPDYPSLMKLTLSGN---------PIKQIKTGAFQPLSYLVTLELSKCGIEVI 162
Q + S + ++ L L + + +I +FQ L L L + I I
Sbjct: 285 QHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGI 344
Query: 163 EDAAFVGLDSLEWLKLDNNKITTIS-----GSNILPTGLHGIDLHHN 204
+ F GL +L++L L N+ + + ++ + LH ++L N
Sbjct: 345 KSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKN 391
Score = 113 bits (284), Expect = 4e-26
Identities = 37/164 (22%), Positives = 69/164 (42%), Gaps = 10/164 (6%)
Query: 49 PNTQVLDYTGNNLKTLHNEKFQKMGLVNLQKIYLSRCRISV--IDSKAFRGLTN--LVDL 104
+ L+ N++ + + F GL+NL+ + LS S+ + ++ F L + L L
Sbjct: 329 KCLEHLNMEDNDIPGIKSNMFT--GLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHIL 386
Query: 105 DFSHNVLQTVPSDTFPDYPSLMKLTLSGNPIKQ-IKTGAFQPLSYLVTLELSKCGIEVIE 163
+ + N + + SD F L L L N I Q + ++ L + + LS +
Sbjct: 387 NLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLT 446
Query: 164 DAAFVGLDSLEWLKLDNNKITTI-SGSNILP--TGLHGIDLHHN 204
+F + SL+ L L + + S + L +DL +N
Sbjct: 447 RNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNN 490
Score = 112 bits (283), Expect = 6e-26
Identities = 34/162 (20%), Positives = 67/162 (41%), Gaps = 6/162 (3%)
Query: 49 PNTQVLDYTGNNLKTLHNEKFQKMGLVNLQKIYLSRCRISVIDSKAFRGLTNLVDLDFSH 108
N Q L + N ++ L +E+ +L+K+ LS +I F + L L ++
Sbjct: 145 ENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNN 204
Query: 109 NVLQTVPSDTFPDY---PSLMKLTLSGNPIKQIKTGAFQPLSY--LVTLELSKCGIEVIE 163
L ++ S+ L+LS + + F L + L L+LS + V+
Sbjct: 205 VQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVG 264
Query: 164 DAAFVGLDSLEWLKLDNNKITTISGSNILP-TGLHGIDLHHN 204
+ +F L LE+ L+ N I + ++ + ++L +
Sbjct: 265 NDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRS 306
Score = 98.1 bits (245), Expect = 3e-21
Identities = 33/131 (25%), Positives = 56/131 (42%), Gaps = 4/131 (3%)
Query: 75 VNLQKIYLSRCRISVIDSKAFRGLTNLVDLDFSHNVLQTVPSDTFPDYPSLMKLTLSGNP 134
V+ + S +++ + TN+ L+ +HN L+ +P+ F Y L L + N
Sbjct: 4 VSHEVADCSHLKLTQVPDDLP---TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNT 60
Query: 135 IKQIKTGAFQPLSYLVTLELSKCGIEVIEDAAFVGLDSLEWLKLDNNKITTISGSNILP- 193
I +++ Q L L L L + + D F +L L L +N I I + +
Sbjct: 61 ISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQ 120
Query: 194 TGLHGIDLHHN 204
L +DL HN
Sbjct: 121 KNLITLDLSHN 131
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR,
immune system; 2.50A {Eptatretus burgeri}
Length = 270
Score = 145 bits (367), Expect = 4e-39
Identities = 64/265 (24%), Positives = 107/265 (40%), Gaps = 36/265 (13%)
Query: 16 SACPTSCICKWKGGKQTVECVNKSLITVVEGMDPNTQVLDYTGNNLKTLHNEKFQKMGLV 75
C C K +V+C +K L + + +T+ LD N L +L ++ F L
Sbjct: 6 KKDGGVCSCN--NNKNSVDCSSKKLTAIPSNIPADTKKLDLQSNKLSSLPSKAFH--RLT 61
Query: 76 NLQKIYLSRCRISVIDSKAFRGLTNLVDLDFSHNVLQTVPSDTFPDYPSLMKLTLSGNPI 135
L+ +YL+ ++ + + F+ L NL L + N LQ +P F +L +L L N +
Sbjct: 62 KLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQL 121
Query: 136 KQIKTGAFQPLSYLVTLELSKCGIEVIEDAAFVGLDSLEWLKLDNNKITTIS-------- 187
K + F L+ L L L ++ + F L SL+ L+L NN++ +
Sbjct: 122 KSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLT 181
Query: 188 -------GSNIL---PTG-------LHGIDLHHNPWTCDCL-LIGLRRWLESTKTPMAID 229
+N L P G L + L NPW C C +I + +WL K +
Sbjct: 182 ELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWDCTCNGIIYMAKWL-KKKADEGLG 240
Query: 230 PICSVPPRLSS-----VTIKQLSID 249
+ + +T K + D
Sbjct: 241 GVDTAGCEKGGKAVLEITEKDAASD 265
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2
related L recognition, receptor, innate immunity,
glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus
musculus} PDB: 3b2d_A* 3rg1_A*
Length = 606
Score = 152 bits (386), Expect = 5e-39
Identities = 45/209 (21%), Positives = 74/209 (35%), Gaps = 7/209 (3%)
Query: 16 SACPTSCICKWKGGKQTVECVNKSLITVVEGMDPNTQVLDYTGNNLKTLHNEKFQKMGLV 75
++ CI K +T C N L + + +T+ L+++ N L T+ N F L+
Sbjct: 2 TSSDQKCIEKEVN--KTYNCENLGLNEIPGTLPNSTECLEFSFNVLPTIQNTTFS--RLI 57
Query: 76 NLQKIYLSRCRISVIDSKAFRGLTNLVDLDFSHNVLQTVPSDTFPDYPSLMKLTLSGNPI 135
NL + L+RC+I I F+ L L + N L + +L L I
Sbjct: 58 NLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGI 117
Query: 136 KQIKTGAFQPLSYLVTLELSKCGIEVIEDAAFVGLDSLEWLKLDNNKITTISGSNILP-T 194
I L +L L I I+ + L+ L NN I +S ++
Sbjct: 118 SSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQ 177
Query: 195 GLHGIDLH--HNPWTCDCLLIGLRRWLES 221
+ L+ N +S
Sbjct: 178 QATNLSLNLNGNDIAGIEPGAFDSAVFQS 206
Score = 147 bits (372), Expect = 3e-37
Identities = 47/206 (22%), Positives = 77/206 (37%), Gaps = 8/206 (3%)
Query: 49 PNTQVLDYTGNNLKTLHNEKFQKMGLVNLQKIYLSRCRISVIDSKAFRGLTNLVDLDFSH 108
P ++LD LK + + L L+ + LS + + + F GL L L+
Sbjct: 400 PQLELLDLAFTRLKVKDAQSPFQ-NLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQG 458
Query: 109 NVLQTV---PSDTFPDYPSLMKLTLSGNPIKQIKTGAFQPLSYLVTLELSKCGIEVIEDA 165
N +++ L L LS + I AF L + ++LS +
Sbjct: 459 NHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIE 518
Query: 166 AFVGLDSLEWLKLDNNKITTISGSNILP-TGLHGIDLHHNPWTCDCLLIGLRRWLESTKT 224
A L + L L +N I+ I S + + I+L NP C C I W +
Sbjct: 519 ALSHLKGIY-LNLASNHISIILPSLLPILSQQRTINLRQNPLDCTCSNIYFLEWYKENMQ 577
Query: 225 --PMAIDPICSVPPRLSSVTIKQLSI 248
D +C PP L V + +++
Sbjct: 578 KLEDTEDTLCENPPLLRGVRLSDVTL 603
Score = 124 bits (313), Expect = 9e-30
Identities = 32/176 (18%), Positives = 70/176 (39%), Gaps = 9/176 (5%)
Query: 37 NKSLITVVEGMDPNT----QVLDYTGNNLKTLHNEKFQKMGLVNLQKIYLSRCRISVIDS 92
++L+ + +G+ +T + + + + + F+ + ++++ I L + I S
Sbjct: 212 TQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISS 271
Query: 93 KAFRGLTNLVDLDFSHNVLQTVPSDTFPDYPSLMKLTLSGNPIKQIKTGAFQPLSYLVTL 152
F + L +LD + L +P +L KL LS N + + + L L
Sbjct: 272 NTFHCFSGLQELDLTATHLSELP-SGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHL 330
Query: 153 ELSKCGIEV-IEDAAFVGLDSLEWLKLDNNKITTISGSNILPTG---LHGIDLHHN 204
+ + + L++L L L ++ I T N+ L ++L +N
Sbjct: 331 SIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYN 386
Score = 101 bits (253), Expect = 2e-22
Identities = 25/185 (13%), Positives = 51/185 (27%), Gaps = 31/185 (16%)
Query: 49 PNTQVLDYTGNNLKTLHNEKFQKMGLVNLQKIYLSRCRISVIDSKAFRGLTNL--VDLDF 106
+ L N++ ++ K L+ + I + + L + L+
Sbjct: 129 KTLESLYLGSNHISSIKLPKGF--PTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNL 186
Query: 107 SHNVLQTVPSDTFP-------------------------DYPSLMKLTLSGNPIKQIKTG 141
+ N + + F SL T + I
Sbjct: 187 NGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPA 246
Query: 142 AFQPLS--YLVTLELSKCGIEVIEDAAFVGLDSLEWLKLDNNKITTISGSNILPTGLHGI 199
F+ L + ++ L K I F L+ L L ++ + + + L +
Sbjct: 247 VFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLSELPSGLVGLSTLKKL 306
Query: 200 DLHHN 204
L N
Sbjct: 307 VLSAN 311
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS,
immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Length = 570
Score = 151 bits (383), Expect = 8e-39
Identities = 55/192 (28%), Positives = 85/192 (44%), Gaps = 9/192 (4%)
Query: 49 PNTQVLDYTGNNLKTLHNEKFQKMGLVNLQKIYLSRCRISVI-DSKAFRGLTNLVDLDFS 107
+ + LD + N + T+ + F +GL L+ + + + + F L NL+ LD S
Sbjct: 373 TSLKYLDLSFNGVITMSSN-F--LGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDIS 429
Query: 108 HNVLQTVPSDTFPDYPSLMKLTLSGNPIKQ-IKTGAFQPLSYLVTLELSKCGIEVIEDAA 166
H + + F SL L ++GN ++ F L L L+LS+C +E + A
Sbjct: 430 HTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTA 489
Query: 167 FVGLDSLEWLKLDNNKITTISGSNILP--TGLHGIDLHHNPWTCDCLLIG-LRRWLESTK 223
F L SL+ L + +N++ ++ I T L I LH NPW C C I L RWL
Sbjct: 490 FNSLSSLQVLNMASNQLKSVP-DGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSRWLNKNS 548
Query: 224 TPMAIDPICSVP 235
CS
Sbjct: 549 QKEQGSAKCSGS 560
Score = 120 bits (304), Expect = 9e-29
Identities = 41/189 (21%), Positives = 69/189 (36%), Gaps = 30/189 (15%)
Query: 22 CICKWKGGKQTVECVNKSLITVVEGMDPNTQVLDYTGNNLKTLHNEKFQKMGLVNLQKIY 81
C+ T +C+ + + + + +T+ LD
Sbjct: 3 CVEVVPNI--TYQCMELNFYKIPDNLPFSTKNLD-------------------------- 34
Query: 82 LSRCRISVIDSKAFRGLTNLVDLDFSHNVLQTVPSDTFPDYPSLMKLTLSGNPIKQIKTG 141
LS + + S +F L LD S +QT+ + L L L+GNPI+ + G
Sbjct: 35 LSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALG 94
Query: 142 AFQPLSYLVTLELSKCGIEVIEDAAFVGLDSLEWLKLDNNKITTISGSNILP--TGLHGI 199
AF LS L L + + +E+ L +L+ L + +N I + T L +
Sbjct: 95 AFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHL 154
Query: 200 DLHHNPWTC 208
DL N
Sbjct: 155 DLSSNKIQS 163
Score = 73.2 bits (180), Expect = 1e-13
Identities = 28/194 (14%), Positives = 59/194 (30%), Gaps = 17/194 (8%)
Query: 34 ECVNKSLITVVEGMDPNTQVLDYTGNNLKTLHNEKFQKMGLVNLQKIYLSRCRISV-IDS 92
+ + + + V+ M LD + N + + F+++ L K+ L S+ +
Sbjct: 162 QSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEI---RLHKLTLRNNFDSLNVMK 218
Query: 93 KAFRGLTNLVDLD------FSHNVLQTVPSDTFPDYPSLMKLTLSGNPIKQIK---TGAF 143
+GL L + L+ +L + F
Sbjct: 219 TCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLF 278
Query: 144 QPLSYLVTLELSKCGIEVIEDAAFVGLDSLEWLKLDNNKITTISGSNILPTGLHGIDLHH 203
L+ + + L IE ++D ++ + L+L N K + L +
Sbjct: 279 NCLTNVSSFSLVSVTIERVKDFSY--NFGWQHLELVNCKFGQF--PTLKLKSLKRLTFTS 334
Query: 204 NPWTCDCLLIGLRR 217
N + L
Sbjct: 335 NKGGNAFSEVDLPS 348
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding;
HET: NAG; 2.00A {Anopheles gambiae}
Length = 317
Score = 142 bits (361), Expect = 9e-38
Identities = 40/207 (19%), Positives = 67/207 (32%), Gaps = 9/207 (4%)
Query: 49 PNTQVLDYTGNNLKTLHNEKFQKMGLVNLQKIYLSRCRISVIDSKAFRGLTNLVDLDFSH 108
P+ + L NN+ + + Q + IYL+ +I+++ + + LD
Sbjct: 99 PSIETLHAANNNISRVSCSRGQ-----GKKNIYLANNKITMLRDLDEGCRSRVQYLDLKL 153
Query: 109 NVLQTVPSDTFPDY-PSLMKLTLSGNPIKQIKTGAFQPLSYLVTLELSKCGIEVIEDAAF 167
N + TV +L L L N I +K + L TL+LS + + F
Sbjct: 154 NEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQVV--FAKLKTLDLSSNKLAFM-GPEF 210
Query: 168 VGLDSLEWLKLDNNKITTISGSNILPTGLHGIDLHHNPWTCDCLLIGLRRWLESTKTPMA 227
+ W+ L NNK+ I + L DL N + C L +
Sbjct: 211 QSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQ 270
Query: 228 IDPICSVPPRLSSVTIKQLSIDELACE 254
+ CE
Sbjct: 271 TVKKLTGQNEEECTVPTLGHYGAYCCE 297
Score = 112 bits (283), Expect = 2e-27
Identities = 32/157 (20%), Positives = 60/157 (38%), Gaps = 13/157 (8%)
Query: 49 PNTQVLDYTGNNLKTLHNEKFQKMGLVNLQKIYLSRCRISVIDSKAFRGLTNLVDLDFSH 108
++ T ++LK Q N++++ LS +S I + T L L+ S
Sbjct: 10 NRYKIEKVTDSSLKQALASLRQ--SAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSS 67
Query: 109 NVLQTVPSDTFPDYPSLMKLTLSGNPIKQIKTGAFQPLSYLVTLELSKCGIEVIEDAAFV 168
NVL +L L L+ N ++++ + TL + I + +
Sbjct: 68 NVLYETLD--LESLSTLRTLDLNNNYVQEL-----LVGPSIETLHAANNNISRVSCSRGQ 120
Query: 169 GLDSLEWLKLDNNKITTISGSNILP-TGLHGIDLHHN 204
+ + L NNKIT + + + + +DL N
Sbjct: 121 ---GKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLN 154
Score = 96.6 bits (241), Expect = 6e-22
Identities = 29/131 (22%), Positives = 52/131 (39%), Gaps = 9/131 (6%)
Query: 74 LVNLQKIYLSRCRISVIDSKAFRGLTNLVDLDFSHNVLQTVPSDTFPDYPSLMKLTLSGN 133
+ ++ + + + N+ +LD S N L + + + L L LS N
Sbjct: 9 GNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSN 68
Query: 134 PIKQIKTGAFQPLSYLVTLELSKCGIEVIEDAAFVGLDSLEWLKLDNNKITTISGSNILP 193
+ + + LS L TL+L+ ++ + S+E L NN I+ +S S
Sbjct: 69 VLYET--LDLESLSTLRTLDLNNNYVQELL-----VGPSIETLHAANNNISRVSCSRG-- 119
Query: 194 TGLHGIDLHHN 204
G I L +N
Sbjct: 120 QGKKNIYLANN 130
Score = 87.7 bits (218), Expect = 6e-19
Identities = 22/110 (20%), Positives = 40/110 (36%), Gaps = 6/110 (5%)
Query: 95 FRGLTNLVDLDFSHNVLQTVPSDTFPDYPSLMKLTLSGNPIKQIKTGAFQPLSYLVTLEL 154
+ + + L+ + ++ +L LSGNP+ QI P + L L L
Sbjct: 6 KQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNL 65
Query: 155 SKCGIEVIEDAAFVGLDSLEWLKLDNNKITTISGSNILPTGLHGIDLHHN 204
S + D L +L L L+NN + + + + +N
Sbjct: 66 SSNVLYETLD--LESLSTLRTLDLNNNYVQELLV----GPSIETLHAANN 109
Score = 72.7 bits (179), Expect = 6e-14
Identities = 19/89 (21%), Positives = 33/89 (37%), Gaps = 1/89 (1%)
Query: 116 SDTFPDYPSLMKLTLSGNPIKQIKTGAFQPLSYLVTLELSKCGIEVIEDAAFVGLDSLEW 175
+ + ++ + +KQ Q + L+LS + I A LE
Sbjct: 3 HEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLEL 62
Query: 176 LKLDNNKITTISGSNILPTGLHGIDLHHN 204
L L +N + L T L +DL++N
Sbjct: 63 LNLSSNVLYETLDLESLST-LRTLDLNNN 90
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A
{Anopheles gambiae}
Length = 390
Score = 143 bits (363), Expect = 2e-37
Identities = 39/169 (23%), Positives = 73/169 (43%), Gaps = 4/169 (2%)
Query: 49 PNTQVLDYTGNNLKTLHNEKFQKMGLVNLQKIYLSRCRISVIDSKAFRGLTNLVDLDFSH 108
N +++ + + ++ L ++ + L+ +I ID+ AF + L
Sbjct: 45 NNQKIVTFKNSTMRKLPAALLD--SFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGF 102
Query: 109 NVLQTVPSDTFPDYPSLMKLTLSGNPIKQIKTGAFQPLSYLVTLELSKCGIEVIEDAAFV 168
N ++ +P F + P L L L N + + G F L TL +S +E IED F
Sbjct: 103 NAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQ 162
Query: 169 GLDSLEWLKLDNNKITTISGSNILPTGLHGIDLHHNPWTCDCLLIGLRR 217
SL+ L+L +N++T + S I L ++ +N + + I +
Sbjct: 163 ATTSLQNLQLSSNRLTHVDLSLI--PSLFHANVSYNLLSTLAIPIAVEE 209
Score = 141 bits (358), Expect = 9e-37
Identities = 44/192 (22%), Positives = 71/192 (36%), Gaps = 13/192 (6%)
Query: 49 PNTQVLDYTGNNLKTLHNEKFQKMGLVNLQKIYLSRCRISVIDSKAFRGLTNLVDLDFSH 108
+ LD + N++ + L + L ++ LV++D S+
Sbjct: 205 IAVEELDASHNSINVVRGPVNV-----ELTILKLQHNNLTDTA--WLLNYPGLVEVDLSY 257
Query: 109 NVLQTVPSDTFPDYPSLMKLTLSGNPIKQIKTGAFQPLSYLVTLELSKCGIEVIEDAAFV 168
N L+ + F L +L +S N + + QP+ L L+LS + +E
Sbjct: 258 NELEKIMYHPFVKMQRLERLYISNNRLVAL-NLYGQPIPTLKVLDLSHNHLLHVERNQP- 315
Query: 169 GLDSLEWLKLDNNKITTISGSNILPTGLHGIDLHHNPWTCDCLLIGLRRWLESTKTPMAI 228
D LE L LD+N I T+ S L + L HN W C+ L R
Sbjct: 316 QFDRLENLYLDHNSIVTLKLSTH--HTLKNLTLSHNDWDCNSLRALFRNVARP--AVDDA 371
Query: 229 DPICSVPPRLSS 240
D C + +L
Sbjct: 372 DQHCKIDYQLEH 383
Score = 123 bits (310), Expect = 2e-30
Identities = 26/174 (14%), Positives = 58/174 (33%), Gaps = 3/174 (1%)
Query: 33 VECVNKSLITVVEGMDPNTQVLDYTGNNLKTLHNEKFQKMGLVNLQKIYLSRCRISVIDS 92
V+ + + + D + F+ + L N + + + + +
Sbjct: 3 VKPRQPEYKCIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPA 62
Query: 93 KAFRGLTNLVDLDFSHNVLQTVPSDTFPDYPSLMKLTLSGNPIKQIKTGAFQPLSYLVTL 152
+ L+ + ++ + + F ++ KL + N I+ + FQ + L L
Sbjct: 63 ALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL 122
Query: 153 ELSKCGIEVIEDAAFVGLDSLEWLKLDNNKITTISGSNILP--TGLHGIDLHHN 204
L + + + F L L + NN + I + T L + L N
Sbjct: 123 VLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIE-DDTFQATTSLQNLQLSSN 175
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein;
innate immunity, leucine-rich repeat, innate immune
receptor system; HET: NAG; 2.47A {Danio rerio} PDB:
3v44_A*
Length = 455
Score = 144 bits (364), Expect = 5e-37
Identities = 53/182 (29%), Positives = 82/182 (45%), Gaps = 4/182 (2%)
Query: 59 NNLKTLHNEKFQKMGLVNLQKIYLSRCRISVIDSKAFRGLTNLVDLDFSHNVLQTVPSDT 118
N K N F+ + ++ LS+ +I + F T+L L + N + + +
Sbjct: 259 TNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNA 318
Query: 119 FPDYPSLMKLTLSGNPIKQIKTGAFQPLSYLVTLELSKCGIEVIEDAAFVGLDSLEWLKL 178
F L+KL LS N + I + F+ L L L+LS I + D +F+GL +L+ L L
Sbjct: 319 FWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELAL 378
Query: 179 DNNKITTISGS--NILPTGLHGIDLHHNPWTCDCLLIG-LRRWLESTKTPMAIDPICSVP 235
D N++ ++ + L + L I LH NPW C C I L RWL CS
Sbjct: 379 DTNQLKSVPDGIFDRLTS-LQKIWLHTNPWDCSCPRIDYLSRWLNKNSQKEQGSAKCSGS 437
Query: 236 PR 237
+
Sbjct: 438 GK 439
Score = 135 bits (341), Expect = 5e-34
Identities = 52/243 (21%), Positives = 95/243 (39%), Gaps = 23/243 (9%)
Query: 18 CPTSCICKWKGGKQTVECVNKSLITVVEGMDPNTQVLDYTGNNLKTLHNEKFQKMGLVNL 77
+ C C+N+ L V + + +D + N++ L+ F L +L
Sbjct: 4 GTSECSV----IGYNAICINRGL-HQVPELPAHVNYVDLSLNSIAELNETSFS--RLQDL 56
Query: 78 QKIYLSRCRIS-VIDSKAFRGLTNLVDLDFSHNVLQTVPSDTFPDYPSLMKLTLSGNPIK 136
Q + + + VI + FRGL++L+ L +N + + F +L LTL+ +
Sbjct: 57 QFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLD 116
Query: 137 --QIKTGAFQPLSYLVTLELSKCGIEVIE-DAAFVGLDSLEWLKLDNNKITTISGSNILP 193
+ F+PL+ L L L I+ I+ + F+ + L L NK+ +I ++L
Sbjct: 117 GAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLN 176
Query: 194 -TGLHGIDLHHNPWTCDCLLIGLRRWLESTKTPMAIDPICSVPPRLSSVTIKQLSIDELA 252
G H L + T + W + C P + +S+T LS +
Sbjct: 177 FQGKHFTLLRLSSITLQDMNEYWLGWEK-----------CGNPFKNTSITTLDLSGNGFK 225
Query: 253 CEP 255
Sbjct: 226 ESM 228
Score = 70.9 bits (174), Expect = 5e-13
Identities = 36/207 (17%), Positives = 57/207 (27%), Gaps = 53/207 (25%)
Query: 49 PNTQVLDYTGNNLKTLHNEKFQKMGLVNLQKIYLSRCRISVIDSKAFRGLTNLV------ 102
+ ++L NN+K + F + + L+ ++ I +
Sbjct: 129 TSLEMLVLRDNNIKKIQPASFFL-NMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRL 187
Query: 103 ----DLDFSHNVLQTVPSDTFPDYPSLMKLTLSGNPIKQIKTGAFQPL------------ 146
D + L S+ L LSGN K+ F
Sbjct: 188 SSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILS 247
Query: 147 ---------------------------SYLVTLELSKCGIEVIEDAAFVGLDSLEWLKLD 179
S + T +LSK I + + F LE L L
Sbjct: 248 NSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLA 307
Query: 180 NNKITTISGSNILP--TGLHGIDLHHN 204
N+I I N T L ++L N
Sbjct: 308 QNEINKID-DNAFWGLTHLLKLNLSQN 333
Score = 50.1 bits (120), Expect = 2e-06
Identities = 22/86 (25%), Positives = 34/86 (39%), Gaps = 26/86 (30%)
Query: 49 PNTQVLDYTGNNLKTLHNEKFQKMGLVNLQKIYLSRCRISVIDSKAFRGLTNLVDLDFSH 108
+VLD + N+++ L ++ +F GL NL +L
Sbjct: 347 DKLEVLDLSYNHIRALGDQ--------------------------SFLGLPNLKELALDT 380
Query: 109 NVLQTVPSDTFPDYPSLMKLTLSGNP 134
N L++VP F SL K+ L NP
Sbjct: 381 NQLKSVPDGIFDRLTSLQKIWLHTNP 406
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix,
leucine-rich repeat, protein; HET: NAG MAN; 2.70A
{Anopheles gambiae}
Length = 487
Score = 141 bits (358), Expect = 5e-36
Identities = 45/228 (19%), Positives = 74/228 (32%), Gaps = 9/228 (3%)
Query: 49 PNTQVLDYTGNNLKTLHNEKFQKMGLVNLQKIYLSRCRISVIDSKAFRGLTNLVDLDFSH 108
P+ + L NN+ + + Q + IYL+ +I+++ + + LD
Sbjct: 99 PSIETLHAANNNISRVSCSRGQ-----GKKNIYLANNKITMLRDLDEGCRSRVQYLDLKL 153
Query: 109 NVLQTVPSDTFPDY-PSLMKLTLSGNPIKQIKTGAFQPLSYLVTLELSKCGIEVIEDAAF 167
N + TV +L L L N I +K + L TL+LS + + F
Sbjct: 154 NEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQVV--FAKLKTLDLSSNKLAFMGPE-F 210
Query: 168 VGLDSLEWLKLDNNKITTISGSNILPTGLHGIDLHHNPWTCDCLLIGLRRWLESTKTPMA 227
+ W+ L NNK+ I + L DL N + C L +
Sbjct: 211 QSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQ 270
Query: 228 IDPICSVPPRLSSVTIKQLSIDELACEPQITPSTFYLEIQEGKNVSLL 275
+ CE P L + K +LL
Sbjct: 271 TVKKLTGQNEEECTVPTLGHYGAYCCEDLPAPFADRLIALKRKEHALL 318
Score = 117 bits (294), Expect = 7e-28
Identities = 33/175 (18%), Positives = 63/175 (36%), Gaps = 24/175 (13%)
Query: 49 PNTQVLDYTGNNLKTLHNEKFQKMGLVNLQKIYLSRCRISVIDSKAFRGLTNLVDLDFSH 108
++ T ++LK Q N++++ LS +S I + T L L+ S
Sbjct: 10 NRYKIEKVTDSSLKQALASLRQ--SAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSS 67
Query: 109 NVLQTVPS-----------------DTFPDYPSLMKLTLSGNPIKQIKTGAFQPLSYLVT 151
NVL PS+ L + N I ++ Q
Sbjct: 68 NVLYETLDLESLSTLRTLDLNNNYVQELLVGPSIETLHAANNNISRVSCSRGQ---GKKN 124
Query: 152 LELSKCGIEVIEDAAFVGLDSLEWLKLDNNKITTISGSNILP--TGLHGIDLHHN 204
+ L+ I ++ D +++L L N+I T++ + + L ++L +N
Sbjct: 125 IYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYN 179
Score = 94.9 bits (236), Expect = 1e-20
Identities = 29/131 (22%), Positives = 52/131 (39%), Gaps = 9/131 (6%)
Query: 74 LVNLQKIYLSRCRISVIDSKAFRGLTNLVDLDFSHNVLQTVPSDTFPDYPSLMKLTLSGN 133
+ ++ + + + N+ +LD S N L + + + L L LS N
Sbjct: 9 GNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSN 68
Query: 134 PIKQIKTGAFQPLSYLVTLELSKCGIEVIEDAAFVGLDSLEWLKLDNNKITTISGSNILP 193
+ + + LS L TL+L+ ++ + S+E L NN I+ +S S
Sbjct: 69 VLYET--LDLESLSTLRTLDLNNNYVQELL-----VGPSIETLHAANNNISRVSCSRG-- 119
Query: 194 TGLHGIDLHHN 204
G I L +N
Sbjct: 120 QGKKNIYLANN 130
Score = 87.6 bits (217), Expect = 3e-18
Identities = 22/110 (20%), Positives = 40/110 (36%), Gaps = 6/110 (5%)
Query: 95 FRGLTNLVDLDFSHNVLQTVPSDTFPDYPSLMKLTLSGNPIKQIKTGAFQPLSYLVTLEL 154
+ + + L+ + ++ +L LSGNP+ QI P + L L L
Sbjct: 6 KQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNL 65
Query: 155 SKCGIEVIEDAAFVGLDSLEWLKLDNNKITTISGSNILPTGLHGIDLHHN 204
S + D L +L L L+NN + + + + +N
Sbjct: 66 SSNVLYETLD--LESLSTLRTLDLNNNYVQELLV----GPSIETLHAANN 109
Score = 71.8 bits (176), Expect = 3e-13
Identities = 19/89 (21%), Positives = 33/89 (37%), Gaps = 1/89 (1%)
Query: 116 SDTFPDYPSLMKLTLSGNPIKQIKTGAFQPLSYLVTLELSKCGIEVIEDAAFVGLDSLEW 175
+ + ++ + +KQ Q + L+LS + I A LE
Sbjct: 3 HEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLEL 62
Query: 176 LKLDNNKITTISGSNILPTGLHGIDLHHN 204
L L +N + L T L +DL++N
Sbjct: 63 LNLSSNVLYETLDLESLST-LRTLDLNNN 90
Score = 63.7 bits (155), Expect = 1e-10
Identities = 13/161 (8%), Positives = 37/161 (22%), Gaps = 4/161 (2%)
Query: 50 NTQVLDYTGNNLKTLHNEKFQKMG---LVNLQKIYLSRCRISVIDSKAFRGLTNLVDLDF 106
N +V +K L + ++ L + D L
Sbjct: 261 NQRVQTVAKQTVKKLTGQNEEECTVPTLGHYGAYCCEDLPAPFADRLIALKRKEHALLSG 320
Query: 107 SHNVLQTVPSDTFPDYPSLMKLTLSGNPIKQIKTGAFQPLSYLVTLELSKCGIEVIEDAA 166
+ + + + + ++ + + +TLE K ++
Sbjct: 321 QGSETERLECERE-NQARQREIDALKEQYRTVIDQVTLRKQAKITLEQKKKALDEQVSNG 379
Query: 167 FVGLDSLEWLKLDNNKITTISGSNILPTGLHGIDLHHNPWT 207
L+ + + + L + +
Sbjct: 380 RRAHAELDGTLQQAVGQIELQHATEEQSPLQLLRAIVKRYE 420
Score = 59.5 bits (144), Expect = 2e-09
Identities = 20/151 (13%), Positives = 48/151 (31%), Gaps = 5/151 (3%)
Query: 49 PNTQVLDYTGNNLKTLHNEKFQKMGLVNLQKIYLSRCRISVIDSKAFRGLTNLVDLDFSH 108
+L G+ + L E+ ++I + + + + + L+
Sbjct: 313 KEHALLSGQGSETERLECEREN---QARQREIDALKEQYRTVIDQVTLRKQAKITLEQKK 369
Query: 109 NVLQTVPSDTFPDYPSLMKLTLSGNPIKQIKTGAFQPLSYLVTLELSKCGI-EVIEDAAF 167
L S+ + L +++ A + S L L E+ +
Sbjct: 370 KALDEQVSNGRRAHAELDGTLQQAVGQIELQ-HATEEQSPLQLLRAIVKRYEEMYVEQQS 428
Query: 168 VGLDSLEWLKLDNNKITTISGSNILPTGLHG 198
V +++ + +K T ++ N L+G
Sbjct: 429 VQNNAIRDWDMYQHKETQLAEENARLKKLNG 459
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil,
helix-loop-helix, leucine-rich repeat, protein; HET: NAG
MAN; 2.70A {Anopheles gambiae}
Length = 597
Score = 142 bits (360), Expect = 8e-36
Identities = 38/156 (24%), Positives = 69/156 (44%), Gaps = 4/156 (2%)
Query: 49 PNTQVLDYTGNNLKTLHNEKFQKMGLVNLQKIYLSRCRISVIDSKAFRGLTNLVDLDFSH 108
N +++ + + ++ L ++ + L+ +I ID+ AF + L
Sbjct: 51 NNQKIVTFKNSTMRKLPAALLD--SFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGF 108
Query: 109 NVLQTVPSDTFPDYPSLMKLTLSGNPIKQIKTGAFQPLSYLVTLELSKCGIEVIEDAAFV 168
N ++ +P F + P L L L N + + G F L TL +S +E IED F
Sbjct: 109 NAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQ 168
Query: 169 GLDSLEWLKLDNNKITTISGSNILPTGLHGIDLHHN 204
SL+ L+L +N++T + S L L ++ +N
Sbjct: 169 ATTSLQNLQLSSNRLTHVDLS--LIPSLFHANVSYN 202
Score = 123 bits (309), Expect = 2e-29
Identities = 29/180 (16%), Positives = 61/180 (33%), Gaps = 3/180 (1%)
Query: 28 GGKQT--VECVNKSLITVVEGMDPNTQVLDYTGNNLKTLHNEKFQKMGLVNLQKIYLSRC 85
GG+Q V+ + + + D + F+ + L N + +
Sbjct: 2 GGQQRYNVKPRQPEYKCIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNS 61
Query: 86 RISVIDSKAFRGLTNLVDLDFSHNVLQTVPSDTFPDYPSLMKLTLSGNPIKQIKTGAFQP 145
+ + + + L+ + ++ + + F ++ KL + N I+ + FQ
Sbjct: 62 TMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQN 121
Query: 146 LSYLVTLELSKCGIEVIEDAAFVGLDSLEWLKLDNNKITTISGSNILP-TGLHGIDLHHN 204
+ L L L + + + F L L + NN + I T L + L N
Sbjct: 122 VPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSN 181
Score = 123 bits (309), Expect = 2e-29
Identities = 42/213 (19%), Positives = 76/213 (35%), Gaps = 36/213 (16%)
Query: 49 PNTQVLDYTGNNLKTLHNEKFQKMGLVNLQKIYLSRCRISVIDSKAFRGLTNLVDLDFSH 108
P+ + + N L TL + ++++ S I+V+ LT L H
Sbjct: 192 PSLFHANVSYNLLSTLAI-------PIAVEELDASHNSINVVRGPVNVELT---ILKLQH 241
Query: 109 NVLQTVPSDTFPDYPSLMKLTLSGNPIKQIKTGAFQPLSYLVTLELSKCGIEVIEDAAFV 168
N L +YP L+++ LS N +++I F + L L +S + + +
Sbjct: 242 NNLTDTA--WLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVAL-NLYGQ 298
Query: 169 GLDSLEWLKLDNNKITTISGS--------------NILPT-------GLHGIDLHHNPWT 207
+ +L+ L L +N + + + N + T L + L HN W
Sbjct: 299 PIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHNSIVTLKLSTHHTLKNLTLSHNDWD 358
Query: 208 CDCLLIGLRRWLESTKTPMAIDPICSVPPRLSS 240
C+ L R D C + +L
Sbjct: 359 CNSLRALFRNVARP--AVDDADQHCKIDYQLEH 389
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto;
TLR2, PAM3CSK4, lipopeptide, innate immunity,
cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A
{Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A*
2z7x_A*
Length = 549
Score = 140 bits (355), Expect = 3e-35
Identities = 49/191 (25%), Positives = 81/191 (42%), Gaps = 14/191 (7%)
Query: 17 ACPTSCICKWKGGKQTVECVNKSLITVVEGMDPNTQVLDYTGNNLKTLHNEKFQKMGLVN 76
+C S +C + ++S ++ G+ + LD + N + + + + N
Sbjct: 3 SCDASGVC---------DGRSRSFTSIPSGLTAAMKSLDLSFNKITYIGHGDLR--ACAN 51
Query: 77 LQKIYLSRCRISVIDSKAFRGLTNLVDLDFSHNVLQTVPSDTFPDYPSLMKLTLSGNPIK 136
LQ + L RI+ I+ AF L +L LD S N L ++ S F SL L L GNP +
Sbjct: 52 LQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQ 111
Query: 137 QI-KTGAFQPLSYLVTLELSKC-GIEVIEDAAFVGLDSLEWLKLDNNKITTISGSNILP- 193
+ T F L+ L TL + I F GL SL L++ + ++
Sbjct: 112 TLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSI 171
Query: 194 TGLHGIDLHHN 204
+H + LH +
Sbjct: 172 RDIHHLTLHLS 182
Score = 129 bits (327), Expect = 9e-32
Identities = 43/191 (22%), Positives = 76/191 (39%), Gaps = 12/191 (6%)
Query: 49 PNTQVLDYTGNNLKTLHNEKFQKMGLVNLQKIYLSRCRISVIDSKAFRGLTNLVDLDFSH 108
P+ Q L + N+L+++ + L NL + +SR + + + + L+ S
Sbjct: 361 PSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHPMPD-SCQWPEKMRFLNLSS 419
Query: 109 NVLQTVPSDTFPDYPSLMKLTLSGNPIKQIKTGAFQPLSYLVTLELSKCGIEVIEDAAFV 168
++ V + +L L +S N + L L L +S+ ++ + DA+
Sbjct: 420 TGIRVVKTCIPQ---TLEVLDVSNNNLDSFSLF----LPRLQELYISRNKLKTLPDASL- 471
Query: 169 GLDSLEWLKLDNNKITTISGSNILP-TGLHGIDLHHNPWTCDCLLIG-LRRWLESTKTPM 226
L +K+ N++ ++ T L I LH NPW C C I L RWL
Sbjct: 472 -FPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSRWLNKNSQKE 530
Query: 227 AIDPICSVPPR 237
CS +
Sbjct: 531 QGSAKCSGSGK 541
Score = 104 bits (262), Expect = 1e-23
Identities = 28/167 (16%), Positives = 60/167 (35%), Gaps = 11/167 (6%)
Query: 49 PNTQVLDYTGNNLKTLHNEKFQ------KMGLVNLQKIYLSRCRISVIDSKAFRGLTNLV 102
+ D T N L + + K+ V ++++++ + + S + L +
Sbjct: 254 SEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVK 313
Query: 103 DLDFSHNVLQTVPSDTFPDYPSLMKLTLSGNPIKQIK---TGAFQPLSYLVTLELSKCGI 159
+ ++ + VP SL L LS N + + + L TL LS+ +
Sbjct: 314 RITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHL 373
Query: 160 EVIEDAA--FVGLDSLEWLKLDNNKITTISGSNILPTGLHGIDLHHN 204
++ + L +L L + N + S P + ++L
Sbjct: 374 RSMQKTGEILLTLKNLTSLDISRNTFHPMPDSCQWPEKMRFLNLSST 420
Score = 103 bits (258), Expect = 3e-23
Identities = 43/217 (19%), Positives = 78/217 (35%), Gaps = 11/217 (5%)
Query: 49 PNTQVLDYTGNNLKTLHNEKFQKMGLVNLQKIYLSRC-RISVIDSKAFRGLTNLVDLDFS 107
+ + L+ GN +TL L NLQ + + S I F GLT+L +L+
Sbjct: 98 SSLKYLNLMGNPYQTLGVTSLFP-NLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIK 156
Query: 108 HNVLQTVPSDTFPDYPSLMKLTLSGNPIKQIKTGAFQPLSYLVTLELSKCGIEVIEDAAF 167
L+ S + + LTL + + LS + LEL + + +
Sbjct: 157 ALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPL 216
Query: 168 VGLDSLEWLKLDNNKITTIS-GSNILPTGLHGIDLHHNPWTC-DCLLIGLRRWLESTKTP 225
+ +K + + ++ S L L + DC L GL + S
Sbjct: 217 PVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDV 276
Query: 226 MAIDPICSVPPRLSSVTIKQLSIDELACEPQITPSTF 262
+ S ++ +VTI++L I + + +
Sbjct: 277 V------SELGKVETVTIRRLHIPQFY-LFYDLSTVY 306
Score = 87.9 bits (218), Expect = 3e-18
Identities = 24/166 (14%), Positives = 52/166 (31%), Gaps = 11/166 (6%)
Query: 50 NTQVLDYTGNNLKTL-----HNEKFQKMGLVNLQKIYLSRCRISVIDSKAFRGLTNLVDL 104
+ + D + N L L + + + V+ + L
Sbjct: 232 GSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRL 291
Query: 105 DFSHNVLQTVPSDTFPDYPSLMKLTLSGNPIKQIKTGAFQPLSYLVTLELSKCGIE---V 161
L S + + ++T+ + + + Q L L L+LS+ + +
Sbjct: 292 HIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYL 351
Query: 162 IEDAAFVGLDSLEWLKLDNNKITTISGSNILPTGLHG---IDLHHN 204
A SL+ L L N + ++ + + L +D+ N
Sbjct: 352 KNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRN 397
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex,
leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A
{Homo sapiens} PDB: 1xwd_C*
Length = 350
Score = 133 bits (337), Expect = 2e-34
Identities = 43/217 (19%), Positives = 78/217 (35%), Gaps = 32/217 (14%)
Query: 17 ACPTSCICKWKGGKQTVECVNKSLITVVEGMDPNTQVLDYTGNNLKTLHNEKFQKM---- 72
C IC + C + + + N L + L+ + F
Sbjct: 1 GCH-HRICHCSN--RVFLCQESKVTEIPSDLPRNAIELRFVLTKLRVIQKGAFSGFGDLE 57
Query: 73 -------------------GLVNLQKIYLSRC-RISVIDSKAFRGLTNLVDLDFSHNVLQ 112
L L +I + + + I+ +AF+ L NL L S+ ++
Sbjct: 58 KIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIK 117
Query: 113 TVPSDTFPDYPSLMKLTLSGNP-IKQIKTGAFQPLSY-LVTLELSKCGIEVIEDAAFVGL 170
+P + L + N I I+ +F LS+ V L L+K GI+ I ++AF G
Sbjct: 118 HLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAFNGT 177
Query: 171 DSLEWLKLDNNKITTISGSNILP--TGLHGIDLHHNP 205
E DNN + + +++ +G +D+
Sbjct: 178 QLDELNLSDNNNLEELP-NDVFHGASGPVILDISRTR 213
Score = 88.3 bits (219), Expect = 5e-19
Identities = 28/176 (15%), Positives = 51/176 (28%), Gaps = 30/176 (17%)
Query: 49 PNTQVLDYTGNN-LKTLHNEKFQKMGLVNLQKIYLSRCRISVIDSKAFRGLTNLVDLDFS 107
+LD N + T+ F + ++L++ I I + AF G
Sbjct: 128 LQKVLLDIQDNINIHTIERNSFVGLS-FESVILWLNKNGIQEIHNSAFNGTQLDELNLSD 186
Query: 108 HNVLQTVPSDTFPDYPSLMKLTLSGNPIKQIKTGAFQPLSYLVTLELSKCGIEVIEDAAF 167
+N L+ +P+D F + L +S I + + + L L ++ +
Sbjct: 187 NNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTYN--LKKLP--TL 242
Query: 168 VGLDSLEWLKLDNNKITTISGSNILPTGLHGIDLHHNPWTCDCLLIGLRRWLESTK 223
L +L L P C R+ E
Sbjct: 243 EKLVALMEASLT------------------------YPSHCCAFANWRRQISELHP 274
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2,
lipopeptide, innate immunity, glycoprotein, immune RES
inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Length = 353
Score = 131 bits (332), Expect = 1e-33
Identities = 46/341 (13%), Positives = 88/341 (25%), Gaps = 112/341 (32%)
Query: 4 WIFLIATIIKIVSA----CPTSCICKWKGGKQTVECVNKSLITVVEGMDPNTQVL----- 54
W+ + +I +S S C + + SL ++ G+ + L
Sbjct: 6 WMVWVLGVIISLSKEESSNQASLSC---DRNGICKGSSGSLNSIPSGLTEAVKSLDLSNN 62
Query: 55 -------------------DYTGNNLKTLHNEKFQKM----------------------G 73
T N + T+ + F +
Sbjct: 63 RITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKP 122
Query: 74 LVNLQKIYLSRCRISVI-DSKAFRGLTNLVDLDFSHNV-LQTVPSDTFPDYPSLMKLTLS 131
L +L + L + ++ F LT L L + + F L +L +
Sbjct: 123 LSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEID 182
Query: 132 GNPIKQIKTGAFQPLSYLVTLELSKCGIEVIEDAAFVGLDSLEWLKLDNNKITTISGSNI 191
+ ++ + + + + + L L ++ + S+E L+L + + T S +
Sbjct: 183 ASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSEL 242
Query: 192 LP--------------------------------TGLHGIDLHH---------------- 203
+GL ++
Sbjct: 243 STGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTS 302
Query: 204 --------NPWTCDCLLIG-LRRWLESTKTPMAIDPICSVP 235
NPW C C I L RWL CS
Sbjct: 303 LQKIWLHTNPWDCSCPRIDYLSRWLNKNSQKEQGSAKCSGS 343
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein;
HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A*
1xcd_A*
Length = 330
Score = 130 bits (330), Expect = 2e-33
Identities = 42/168 (25%), Positives = 72/168 (42%), Gaps = 7/168 (4%)
Query: 40 LITVVEGMDPNTQVLDYTGNNLKTLHNEKFQKMGLVNLQKIYLSRCRI--SVIDSKAFRG 97
L + E M Q L N + + F GL + + L + S I++ AF+G
Sbjct: 112 LKELPEKMPKTLQELRVHENEITKVRKSVFN--GLNQMIVVELGTNPLKSSGIENGAFQG 169
Query: 98 LTNLVDLDFSHNVLQTVPSDTFPDYPSLMKLTLSGNPIKQIKTGAFQPLSYLVTLELSKC 157
+ L + + + T+P P SL +L L GN I ++ + + L+ L L LS
Sbjct: 170 MKKLSYIRIADTNITTIPQGLPP---SLTELHLDGNKITKVDAASLKGLNNLAKLGLSFN 226
Query: 158 GIEVIEDAAFVGLDSLEWLKLDNNKITTISGSNILPTGLHGIDLHHNP 205
I +++ + L L L+NNK+ + G + + LH+N
Sbjct: 227 SISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNN 274
Score = 126 bits (319), Expect = 4e-32
Identities = 39/172 (22%), Positives = 65/172 (37%), Gaps = 15/172 (8%)
Query: 49 PNTQVLDYTGNNLKT--LHNEKFQKMGLVNLQKIYLSRCRISVIDSKAFRGLTNLVDLDF 106
V++ N LK+ + N FQ G+ L I ++ I+ I LT L
Sbjct: 145 NQMIVVELGTNPLKSSGIENGAFQ--GMKKLSYIRIADTNITTIPQGLPPSLTEL---HL 199
Query: 107 SHNVLQTVPSDTFPDYPSLMKLTLSGNPIKQIKTGAFQPLSYLVTLELSKCGIEVIEDAA 166
N + V + + +L KL LS N I + G+ +L L L+ + +
Sbjct: 200 DGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVP-GG 258
Query: 167 FVGLDSLEWLKLDNNKITTISGSNILPTG-------LHGIDLHHNPWTCDCL 211
++ + L NN I+ I ++ P G G+ L NP +
Sbjct: 259 LADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEI 310
Score = 115 bits (289), Expect = 4e-28
Identities = 44/213 (20%), Positives = 75/213 (35%), Gaps = 57/213 (26%)
Query: 16 SACPTSCICKWKGGKQTVECVNKSLITVVEGMDPNTQVLDYTGNNLKTLHNEKFQKMGLV 75
CP C C + V+C + L V + + P+T +LD
Sbjct: 23 PVCPFRCQC----HLRVVQCSDLGLEKVPKDLPPDTALLD-------------------- 58
Query: 76 NLQKIYLSRCRISVIDSKAFRGLTNLVDLDFSHNVLQTVPSDTFPDYPSLMKLTLSGNPI 135
L +I+ I F+ L NL L +N + + F L +L LS N +
Sbjct: 59 ------LQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQL 112
Query: 136 KQIKTGAFQPLSYLVTLELSKCGIEVIEDAAFVGLDSLEWLKLDNNKITT---------- 185
K++ + L L + + I + + F GL+ + ++L N + +
Sbjct: 113 KELPEKMPKTLQE---LRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQG 169
Query: 186 --------ISGSNI------LPTGLHGIDLHHN 204
I+ +NI LP L + L N
Sbjct: 170 MKKLSYIRIADTNITTIPQGLPPSLTELHLDGN 202
Score = 85.8 bits (213), Expect = 2e-18
Identities = 18/140 (12%), Positives = 47/140 (33%), Gaps = 31/140 (22%)
Query: 49 PNTQVLDYTGNNLKTLHNEKFQKMGLVNLQKIYLSRCRISVIDSKAFRGLTNLVDLDFSH 108
N L + N++ + N +L++++L+ ++ + + + +
Sbjct: 216 NNLAKLGLSFNSISAVDNGSLA--NTPHLRELHLNNNKLVKVPG-GLADHKYIQVVYLHN 272
Query: 109 NVLQTVPSDTFP------DYPSLMKLTLSGNPIKQIKTGAFQPLSYLVTLELSKCGIEVI 162
N + + S+ F S ++L NP++ + I
Sbjct: 273 NNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWE----------------------I 310
Query: 163 EDAAFVGLDSLEWLKLDNNK 182
+ + F + ++L N K
Sbjct: 311 QPSTFRCVYVRAAVQLGNYK 330
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat,
asymmetric homodimer, glycoprotein, immune system; HET:
NAG FUC; 26.00A {Homo sapiens}
Length = 844
Score = 135 bits (342), Expect = 5e-33
Identities = 41/199 (20%), Positives = 84/199 (42%), Gaps = 4/199 (2%)
Query: 49 PNTQVLDYTGNNLKTLHNEKFQKMGLVNLQKIYLSRCRISVIDSKAFRGLTNLVDLDFSH 108
+ + +N+K F + +++ + LS + ++S+ F L +L L+ ++
Sbjct: 240 HHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAY 299
Query: 109 NVLQTVPSDTFPDYPSLMKLTLSGNPIKQIKTGAFQPLSYLVTLELSKCGIEVIEDAAFV 168
N + + + F +L L LS N + ++ + F L + ++L K I +I+D F
Sbjct: 300 NKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFK 359
Query: 169 GLDSLEWLKLDNNKITTISGSNILPTGLHGIDLHHNPWTCDCLLIGLRRWLESTKTPMAI 228
L+ L+ L L +N +TTI +P I L N + + ++ +
Sbjct: 360 FLEKLQTLDLRDNALTTIHFIPSIPD----IFLSGNKLVTLPKINLTANLIHLSENRLEN 415
Query: 229 DPICSVPPRLSSVTIKQLS 247
I R+ + I L+
Sbjct: 416 LDILYFLLRVPHLQILILN 434
Score = 128 bits (324), Expect = 8e-31
Identities = 59/248 (23%), Positives = 98/248 (39%), Gaps = 36/248 (14%)
Query: 49 PNTQVLDYTGNNLKTLHNEKFQKMGLVNLQKIYLSRCRISVIDSKAF-RGLTNLVDLDFS 107
P+ + +GN L TL I+LS R+ +D F + +L L +
Sbjct: 381 PSIPDIFLSGNKLVTLPKINLT------ANLIHLSENRLENLDILYFLLRVPHLQILILN 434
Query: 108 HNVLQTVPSD-TFPDYPSLMKLTLSGNPIK-----QIKTGAFQPLSYLVTLELSKCGIEV 161
N + D T + PSL +L L N ++ ++ F+ LS+L L L+ +
Sbjct: 435 QNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNS 494
Query: 162 IEDAAFVGLDSLEWLKLDNNKITTISGSNILP--------------------TGLHGIDL 201
+ F L +L L L++N++T +S +++ L +D+
Sbjct: 495 LPPGVFSHLTALRGLSLNSNRLTVLSHNDLPANLEILDISRNQLLAPNPDVFVSLSVLDI 554
Query: 202 HHNPWTCDCLLIGLRRWLESTKTPMAIDP---ICSVPPRLSSVTIKQLSIDELACEPQIT 258
HN + C+C L WL T +A P C P S V++ LS + E +
Sbjct: 555 THNKFICECELSTFINWLNHTNVTIAGPPADIYCVYPDSFSGVSLFSLSTEGCDEEEVLK 614
Query: 259 PSTFYLEI 266
F L I
Sbjct: 615 SLKFSLFI 622
Score = 122 bits (309), Expect = 6e-29
Identities = 45/182 (24%), Positives = 74/182 (40%), Gaps = 10/182 (5%)
Query: 31 QTVECVNKSLITVVEGMDPNTQVLDYTGNNLKTLHNEKFQKMGLVNLQKIYLSRCRISV- 89
+ +L V + + T+ L + N ++T+ F L LQ + L +
Sbjct: 7 RIAFYRFCNLTQVPQVL-NTTERLLLSFNYIRTVTASSFP--FLEQLQLLELGSQYTPLT 63
Query: 90 IDSKAFRGLTNLVDLDFSHNVLQTVPSDTFPDYPSLMKLTLSGNPIKQ--IKTGAFQPLS 147
ID +AFR L NL LD + + + D F L +L L + +K G F+ L
Sbjct: 64 IDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLK 123
Query: 148 YLVTLELSKCGIEVIE-DAAFVGLDSLEWLKLDNNKITTISG---SNILPTGLHGIDLHH 203
L L+LSK I + +F L+SL+ + +N+I + + L L
Sbjct: 124 ALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAA 183
Query: 204 NP 205
N
Sbjct: 184 NS 185
Score = 102 bits (257), Expect = 9e-23
Identities = 38/166 (22%), Positives = 62/166 (37%), Gaps = 14/166 (8%)
Query: 49 PNTQVLDYTGNNLKTLHNEKFQKMGLVNLQKIYLSRCRIS--VIDSKAFRGLTNLVDLDF 106
PN ++LD + + LH + FQ GL +L ++ L C +S V+ FR L L LD
Sbjct: 73 PNLRILDLGSSKIYFLHPDAFQ--GLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDL 130
Query: 107 SHNVLQTVP-SDTFPDYPSLMKLTLSGNPIKQIKTGAFQPLS--YLVTLELSKCGIEVIE 163
S N ++++ +F SL + S N I + +PL L L+ +
Sbjct: 131 SKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRV 190
Query: 164 DAAFVGLD------SLEWLKLDNNKITTISGSNILPTGLHGIDLHH 203
+ LE L + N T + +
Sbjct: 191 SVDWGKCMNPFRNMVLEILDVSGNGWTVDI-TGNFSNAISKSQAFS 235
Score = 102 bits (255), Expect = 2e-22
Identities = 39/176 (22%), Positives = 67/176 (38%), Gaps = 21/176 (11%)
Query: 49 PNTQVLDYTGNNLKTLHNEKFQKMG----LVNLQKIYLSRCRISVIDSKAF--------- 95
N+L + + + K + L+ + +S +V + F
Sbjct: 174 KTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQA 233
Query: 96 ---RGLTNLVDLDFSHNVLQTVPSDTFPDYP--SLMKLTLSGNPIKQIKTGAFQPLSYLV 150
+++ F + ++ +TF S+ L LS + + + F+ L L
Sbjct: 234 FSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLK 293
Query: 151 TLELSKCGIEVIEDAAFVGLDSLEWLKLDNNKITTISGSNI--LPTGLHGIDLHHN 204
L L+ I I D AF GLD+L+ L L N + + SN LP + IDL N
Sbjct: 294 VLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPK-VAYIDLQKN 348
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid
recognition, receptor immunity, lipid binding,
glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO
MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Length = 606
Score = 131 bits (331), Expect = 5e-32
Identities = 41/209 (19%), Positives = 67/209 (32%), Gaps = 30/209 (14%)
Query: 49 PNTQVLDYTGNNLKTLHNEKFQKMGLVNLQKIYLSRCRI-SVIDSKAFRGLTNLVDLDFS 107
LD + N K + F GL +L + ++ S F TNL LD S
Sbjct: 424 EKLLYLDISYTNTKIDFDGIFL--GLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLS 481
Query: 108 HNVLQTVPSDTFPDYPSLMKLTLSGNPIKQIKTGAFQPLSYLVTLELSKCGIEVIEDAAF 167
L+ + F L L +S N + + + + L L TL+ S IE +
Sbjct: 482 KCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGILQ 541
Query: 168 VGLDSLEWLKLDNNKITTISGSNILPTGLHGIDLHHNPWTCDCLLIGLRRWLESTKT--P 225
SL + L +N C C +W++ K
Sbjct: 542 HFPKSLAFFN-----------------------LTNNSVACICEHQKFLQWVKEQKQFLV 578
Query: 226 MAIDPICSVPPRLSSVTIKQLSIDELACE 254
C+ P +++ + L + C
Sbjct: 579 NVEQMTCATPVEMNTSLV--LDFNNSTCY 605
Score = 121 bits (306), Expect = 7e-29
Identities = 40/190 (21%), Positives = 72/190 (37%), Gaps = 30/190 (15%)
Query: 17 ACPTSCICKWKGGKQTVECVNKSLITVVEGMDPNTQVLDYTGNNLKTLHNEKFQKMGLVN 76
CI T +C+++ L V + + +T+ +D
Sbjct: 2 GSLNPCIEVVPNI--TYQCMDQKLSKVPDDIPSSTKNID--------------------- 38
Query: 77 LQKIYLSRCRISVIDSKAFRGLTNLVDLDFSHNVLQTVPSDTFPDYPSLMKLTLSGNPIK 136
LS + ++ S +F + L LD S ++T+ + L L L+GNPI+
Sbjct: 39 -----LSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQ 93
Query: 137 QIKTGAFQPLSYLVTLELSKCGIEVIEDAAFVGLDSLEWLKLDNNKITTISGSNILP--T 194
G+F L+ L L + + +E L +L+ L + +N I + T
Sbjct: 94 SFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLT 153
Query: 195 GLHGIDLHHN 204
L +DL +N
Sbjct: 154 NLVHVDLSYN 163
Score = 120 bits (304), Expect = 1e-28
Identities = 41/161 (25%), Positives = 67/161 (41%), Gaps = 10/161 (6%)
Query: 49 PNTQVLDYTGNNLKTLHNEKFQKMGLVNLQKIYLSRCRISVIDSKAFR--GLTNLVDLDF 106
P + L T N + + L +L + LSR +S ++ G +L LD
Sbjct: 328 PFLKSLTLTMNKGSISFKK----VALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDL 383
Query: 107 SHNVLQTVPSDTFPDYPSLMKLTLSGNPIKQI-KTGAFQPLSYLVTLELSKCGIEVIEDA 165
S N + + F L L + +K++ + AF L L+ L++S ++ D
Sbjct: 384 SFNGAIIMSA-NFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDG 442
Query: 166 AFVGLDSLEWLKLDNNKITTISGSNIL--PTGLHGIDLHHN 204
F+GL SL LK+ N + SN+ T L +DL
Sbjct: 443 IFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKC 483
Score = 100 bits (250), Expect = 5e-22
Identities = 32/157 (20%), Positives = 53/157 (33%), Gaps = 11/157 (7%)
Query: 50 NTQVLDYTGNNLKTLHNEKFQKMGLVNLQKIYLSRCRISVIDSKAFRGLTNLVDLDFSHN 109
T N + KF L N+ + L+ I ++ L
Sbjct: 262 TIDEFRLTYTNDFSDDIVKFH--CLANVSAMSLAGVSIKYLEDVPK--HFKWQSLSIIRC 317
Query: 110 VLQTVPSDTFPDYPSLMKLTLSGNPIKQIKTGAFQPLSYLVTLELSKCGIEVIEDAAF-- 167
L+ P+ P L LTL+ N L L L+LS+ + ++
Sbjct: 318 QLKQFPTLDL---PFLKSLTLTMNKGSIS--FKKVALPSLSYLDLSRNALSFSGCCSYSD 372
Query: 168 VGLDSLEWLKLDNNKITTISGSNILPTGLHGIDLHHN 204
+G +SL L L N +S + + L +D H+
Sbjct: 373 LGTNSLRHLDLSFNGAIIMSANFMGLEELQHLDFQHS 409
Score = 99.0 bits (247), Expect = 1e-21
Identities = 28/149 (18%), Positives = 54/149 (36%), Gaps = 10/149 (6%)
Query: 59 NNLKTLHNEKFQKMGLVNLQKIYLSRCRISVIDSKAFRGLTNLVDLDFSHNVLQTVPSDT 118
NL+ + + V + + L+ D F L N+ + + ++ +
Sbjct: 245 RNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKYLEDVP 304
Query: 119 FPDYPSLMKLTLSGNPIKQIKTGAFQPLSYLVTLELSKCGIEVIEDAAFVGLDSLEWLKL 178
+ L++ +KQ L +L +L L+ + V L SL +L L
Sbjct: 305 K--HFKWQSLSIIRCQLKQF---PTLDLPFLKSLTLTMNKGSISF--KKVALPSLSYLDL 357
Query: 179 DNNKITTI---SGSNILPTGLHGIDLHHN 204
N ++ S S++ L +DL N
Sbjct: 358 SRNALSFSGCCSYSDLGTNSLRHLDLSFN 386
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein,
signaling; HET: NAG FLC; 3.40A {Bos taurus}
Length = 332
Score = 122 bits (307), Expect = 2e-30
Identities = 46/173 (26%), Positives = 70/173 (40%), Gaps = 9/173 (5%)
Query: 37 NKSLITVVEGMDPNTQVLDYTGNNLKTLHNEKFQKMGLVNLQKIYLSRCRI--SVIDSKA 94
N L+ + + + L N ++ + F GL N+ I + + S + A
Sbjct: 112 NH-LVEIPPNLPSSLVELRIHDNRIRKVPKGVFS--GLRNMNCIEMGGNPLENSGFEPGA 168
Query: 95 FRGLTNLVDLDFSHNVLQTVPSDTFPDYPSLMKLTLSGNPIKQIKTGAFQPLSYLVTLEL 154
F GL L L S L +P D +L +L L N I+ I+ S L L L
Sbjct: 169 FDGL-KLNYLRISEAKLTGIPKDLPE---TLNELHLDHNKIQAIELEDLLRYSKLYRLGL 224
Query: 155 SKCGIEVIEDAAFVGLDSLEWLKLDNNKITTISGSNILPTGLHGIDLHHNPWT 207
I +IE+ + L +L L LDNNK++ + L + LH N T
Sbjct: 225 GHNQIRMIENGSLSFLPTLRELHLDNNKLSRVPAGLPDLKLLQVVYLHTNNIT 277
Score = 114 bits (288), Expect = 5e-28
Identities = 39/169 (23%), Positives = 64/169 (37%), Gaps = 16/169 (9%)
Query: 49 PNTQVLDYTGNNLK--TLHNEKFQKMGLVNLQKIYLSRCRISVIDSKAFRGLTNLVDLDF 106
N ++ GN L+ F + L + +S +++ I L L
Sbjct: 147 RNMNCIEMGGNPLENSGFEPGAFDGL---KLNYLRISEAKLTGIPKDLPETLNEL---HL 200
Query: 107 SHNVLQTVPSDTFPDYPSLMKLTLSGNPIKQIKTGAFQPLSYLVTLELSKCGIEVIEDAA 166
HN +Q + + Y L +L L N I+ I+ G+ L L L L + + A
Sbjct: 201 DHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLSRVP-AG 259
Query: 167 FVGLDSLEWLKLDNNKITTISGSNILPTG-------LHGIDLHHNPWTC 208
L L+ + L N IT + ++ P G +GI L +NP
Sbjct: 260 LPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPY 308
Score = 113 bits (285), Expect = 1e-27
Identities = 38/195 (19%), Positives = 66/195 (33%), Gaps = 43/195 (22%)
Query: 16 SACPTSCICKWKGGKQTVECVNKSLITVVEGMDPNTQVLDYTGNNLKTLHNEKFQKMGLV 75
+ CP C C + V+C + L V + + P+T +LD
Sbjct: 25 AMCPFGCHCH----LRVVQCSDLGLKAVPKEISPDTTLLD-------------------- 60
Query: 76 NLQKIYLSRCRISVIDSKAFRGLTNLVDLDFSHNVLQTVPSDTFPDYPSLMKLTLSGNPI 135
L IS + F+GL +L L +N + + F L KL +S N +
Sbjct: 61 ------LQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHL 114
Query: 136 KQIKTGAFQPLSYLVTLELSKCGIEVIEDAAFVGLDSLEWLKLDNNKITTISGSNILPTG 195
+I LV L + I + F GL ++ +++ N + G
Sbjct: 115 VEIPPNLPSS---LVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSG----FEPG 167
Query: 196 ------LHGIDLHHN 204
L+ + +
Sbjct: 168 AFDGLKLNYLRISEA 182
Score = 110 bits (278), Expect = 1e-26
Identities = 29/151 (19%), Positives = 56/151 (37%), Gaps = 11/151 (7%)
Query: 40 LITVVEGMDPNTQVLDYTGNNLKTLHNEKFQKMGLVNLQKIYLSRCRISVIDSKAFRGLT 99
L + + + L N ++ + E L ++ L +I +I++ + L
Sbjct: 184 LTGIPKDLPETLNELHLDHNKIQAIELEDLL--RYSKLYRLGLGHNQIRMIENGSLSFLP 241
Query: 100 NLVDLDFSHNVLQTVPSDTFPDYPSLMKLTLSGNPIKQIKTGAFQPL------SYLVTLE 153
L +L +N L VP+ PD L + L N I ++ F P+ +Y +
Sbjct: 242 TLRELHLDNNKLSRVPAG-LPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGIS 300
Query: 154 LS--KCGIEVIEDAAFVGLDSLEWLKLDNNK 182
L ++ A F + ++ N K
Sbjct: 301 LFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid,
MD-2, LPS, glycoprotein response, inflammatory response,
innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens}
PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Length = 276
Score = 116 bits (294), Expect = 3e-29
Identities = 40/188 (21%), Positives = 69/188 (36%), Gaps = 32/188 (17%)
Query: 19 PTSCICKWKGGKQTVECVNKSLITVVEGMDPNTQVLDYTGNNLKTLHNEKFQKMGLVNLQ 78
P + T +C+ + + + + +T+ LD + N
Sbjct: 2 PCVEVV----PNITYQCMELNFYKIPDNLPFSTKNLDLSFNP------------------ 39
Query: 79 KIYLSRCRISVIDSKAFRGLTNLVDLDFSHNVLQTVPSDTFPDYPSLMKLTLSGNPIKQI 138
+ + S +F L LD S +QT+ + L L L+GNPI+ +
Sbjct: 40 --------LRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSL 91
Query: 139 KTGAFQPLSYLVTLELSKCGIEVIEDAAFVGLDSLEWLKLDNNKITTISGSNILP--TGL 196
GAF LS L L + + +E+ L +L+ L + +N I + T L
Sbjct: 92 ALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNL 151
Query: 197 HGIDLHHN 204
+DL N
Sbjct: 152 EHLDLSSN 159
Score = 111 bits (281), Expect = 1e-27
Identities = 51/193 (26%), Positives = 72/193 (37%), Gaps = 32/193 (16%)
Query: 49 PNTQVLDYTGNNLKTLHNEKFQKMGLVNLQKIYLSRCRISVIDS-KAFRGLTNLVDLDFS 107
+ Q L NL +L N L L+++ ++ I + F LTNL LD S
Sbjct: 100 SSLQKLVAVETNLASLENFPIG--HLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLS 157
Query: 108 HNVLQTVPSDTFPDYPSL----MKLTLSGNPIKQIKTGAFQPLSYLVTLELSKCGIEVIE 163
N +Q++ + + L LS NP+ I+ GAF+ + L L L ++ +
Sbjct: 158 SNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIR-LKELALDTNQLKSVP 216
Query: 164 DAAFVGLDSLEWLKLDNNKITTISGSNILPTGLHGIDLHHNPWTCDCLLIG-LRRWLEST 222
D F L SL+ I LH NPW C C I L RWL
Sbjct: 217 DGIFDRLTSLQK-----------------------IWLHTNPWDCSCPRIDYLSRWLNKN 253
Query: 223 KTPMAIDPICSVP 235
CS
Sbjct: 254 SQKEQGSAKCSGS 266
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex,
GPCR, graves' disea autoimmunity, receptor-autoantibody
complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB:
3g04_C*
Length = 239
Score = 114 bits (287), Expect = 9e-29
Identities = 37/196 (18%), Positives = 68/196 (34%), Gaps = 36/196 (18%)
Query: 15 VSACPTSCICKWKGGKQTVECVNKSLITVVEGMDPNTQVLDYTGNNLKTLHNEKFQKMGL 74
+ C C ++ K + + + P+TQ L
Sbjct: 1 MGCSSPPCECH---QEEDFRVTCKDI-QRIPSLPPSTQTLK------------------- 37
Query: 75 VNLQKIYLSRCRISVIDSKAFRGLTNLVDLDFSHNV-LQTVPSDTFPDYPSLMKLTLSGN 133
L + I S AF L N+ + S +V LQ + S +F + + + +
Sbjct: 38 -------LIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNT 90
Query: 134 P-IKQIKTGAFQPLSYLVTLELSKCGIEVIEDAAFV-GLDSLEWLKL-DNNKITTISGS- 189
+ I A + L L L + G+++ D V D L++ DN +T+I +
Sbjct: 91 RNLTYIDPDALKELPLLKFLGIFNTGLKMFPDLTKVYSTDIFFILEITDNPYMTSIPVNA 150
Query: 190 -NILPTGLHGIDLHHN 204
L + L++N
Sbjct: 151 FQGLCNETLTLKLYNN 166
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity,
antibody, T cell, leucine-rich repeat, immune system;
1.70A {Petromyzon marinus} PDB: 3m18_A
Length = 251
Score = 108 bits (272), Expect = 1e-26
Identities = 57/228 (25%), Positives = 88/228 (38%), Gaps = 46/228 (20%)
Query: 15 VSACPTSCICKWKGGKQTVECVNKSLITVVEGMDPNTQVLDYTGNNLKTLHNEKFQKM-- 72
+ C T C GK+ V+C KSL +V G+ +T+ LD L TL + F+ +
Sbjct: 1 MKTCETVTGCTCNEGKKEVDCQGKSLDSVPSGIPADTEKLDLQSTGLATLSDATFRGLTK 60
Query: 73 --------------------GLVNLQKIYLSRCRISVIDSKAFRGLTNLVDLDFSHNVLQ 112
L L + L+ +++ + F LT L L N L+
Sbjct: 61 LTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLK 120
Query: 113 TVPSDTFPDYPSLMKLTLSGNPIKQIKTGAFQPLSYLVTLELSKCGIEVIEDAAFVGLDS 172
++PS F L +L L+ N ++ I GAF L+ L TL LS ++ + AF L
Sbjct: 121 SLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGK 180
Query: 173 LEWLKLDNNKITTISGSNILPTGLHGIDLHHNPWTCDCLLIG-LRRWL 219
L+ I L N + C I L +W+
Sbjct: 181 LQT-----------------------ITLFGNQFDCSRCEILYLSQWI 205
>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat,
glycoprotein, immune response, inflamma response, innate
immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO
MYR NAG GCS; 3.10A {Homo sapiens}
Length = 605
Score = 113 bits (284), Expect = 3e-26
Identities = 43/213 (20%), Positives = 77/213 (36%), Gaps = 29/213 (13%)
Query: 22 CICKWKGGKQTVECVNKSLITVVEGMDPNTQVLDYTGNNLKTLHNEKFQKM--------- 72
C+ T +C+ + + + + +T+ LD + N L+ L + F
Sbjct: 3 CVEVVPNI--TYQCMELNFYKIPDNLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLS 60
Query: 73 -------------GLVNLQKIYLSRCRISVIDSKAFRGLTNLVDLDFSHNVLQTVPSDTF 119
L +L + L+ I + AF GL++L L L ++ +
Sbjct: 61 RCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPI 120
Query: 120 PDYPSLMKLTLSGNPIKQIKTG-AFQPLSYLVTLELSKCGIEVIEDAAFVGLDSLEW--- 175
+L +L ++ N I+ K F L+ L L+LS I+ I L +
Sbjct: 121 GHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNL 180
Query: 176 -LKLDNNKITTISGSNILPTGLHGIDLHHNPWT 207
L L N + I LH + L +N +
Sbjct: 181 SLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDS 213
Score = 103 bits (260), Expect = 3e-23
Identities = 44/171 (25%), Positives = 69/171 (40%), Gaps = 10/171 (5%)
Query: 39 SLITVVEGMDPNTQVLDYTGNNLKTLHNEKFQKMGLVNLQKIYLSRCRISVID--SKAFR 96
+ + L +T N F ++ L +L+ + LSR +S S++
Sbjct: 315 KFGQFPTLKLKSLKRLTFTSNKG----GNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDF 370
Query: 97 GLTNLVDLDFSHNVLQTVPSDTFPDYPSLMKLTLSGNPIKQ-IKTGAFQPLSYLVTLELS 155
G T+L LD S N + T+ S+ F L L + +KQ + F L L+ L++S
Sbjct: 371 GTTSLKYLDLSFNGVITMSSN-FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDIS 429
Query: 156 KCGIEVIEDAAFVGLDSLEWLKLDNNKITTISGSNILP--TGLHGIDLHHN 204
V + F GL SLE LK+ N +I L +DL
Sbjct: 430 HTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQC 480
Score = 100 bits (251), Expect = 4e-22
Identities = 38/204 (18%), Positives = 67/204 (32%), Gaps = 51/204 (25%)
Query: 49 PNTQVLDYTGNNLK-TLHNEKFQKMGLVNLQKIYLSRCRISVIDSKAFRGLTNLVDLDFS 107
+ +VL GN+ + + F L NL + LS+C++ + AF L++L L+ S
Sbjct: 445 SSLEVLKMAGNSFQENFLPDIFT--ELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMS 502
Query: 108 HNVLQTVPSDTFPDYPSLMKLTLSGNPIKQIKTGAFQPLSYLVTLELSKCGIEVIEDAAF 167
HN ++ + + SL L S N I K Q
Sbjct: 503 HNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQH---------------------- 540
Query: 168 VGLDSLEWLKLDNNKITTISGSNILPTGLHGIDLHHNPWTCDCLLIGLRRWLESTKT--P 225
P+ L ++L N + C C +W++ +
Sbjct: 541 ------------------------FPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLV 576
Query: 226 MAIDPICSVPPRLSSVTIKQLSID 249
C+ P + + L+I
Sbjct: 577 EVERMECATPSDKQGMPVLSLNIT 600
Score = 92.4 bits (230), Expect = 1e-19
Identities = 38/166 (22%), Positives = 61/166 (36%), Gaps = 13/166 (7%)
Query: 49 PNTQVLDYTGNNLKTLHNEKFQKMGLVNLQKIYLSRCRISVID-SKAFRGLTNLVDLDFS 107
+ Q L NL +L N L L+++ ++ I + F LTNL LD S
Sbjct: 100 SSLQKLVAVETNLASLENFPIG--HLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLS 157
Query: 108 HNVLQTVPSDTFPDYPSL----MKLTLSGNPIKQIKTGAFQPLSYLVTLELSKCGIEV-I 162
N +Q++ + + L LS NP+ I+ GAF+ + L L L + +
Sbjct: 158 SNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIR-LHKLTLRNNFDSLNV 216
Query: 163 EDAAFVGLDSLEWLKLDNNKITTISGSNILP----TGLHGIDLHHN 204
GL LE +L + GL + +
Sbjct: 217 MKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEF 262
Score = 83.2 bits (206), Expect = 1e-16
Identities = 29/179 (16%), Positives = 56/179 (31%), Gaps = 28/179 (15%)
Query: 49 PNTQVLDYTGNNLKTLHNEKFQKMGLVNLQKIYLSRCRISVIDSKAFR------------ 96
N ++ + + + Q + L C+ + +
Sbjct: 282 TNVSSFSLVSVTIERVKDFSY----NFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKG 337
Query: 97 -------GLTNLVDLDFSHNVLQ--TVPSDTFPDYPSLMKLTLSGNPIKQIKTGAFQPLS 147
L +L LD S N L S + SL L LS N + + + F L
Sbjct: 338 GNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITM-SSNFLGLE 396
Query: 148 YLVTLELSKCGIE-VIEDAAFVGLDSLEWLKLDNNKITTISGSNILP-TGLHGIDLHHN 204
L L+ ++ + E + F+ L +L +L + + + L + + N
Sbjct: 397 QLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGN 455
Score = 82.8 bits (205), Expect = 1e-16
Identities = 27/159 (16%), Positives = 53/159 (33%), Gaps = 10/159 (6%)
Query: 49 PNTQVLDYTGNNLKTLHNEKFQKM-GLVNLQKIYLSRCRISVIDSKAFRGLTNLVDLDFS 107
N + ++ L ++ L N+ L I + ++ L+
Sbjct: 255 CNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSY--NFGWQHLELV 312
Query: 108 HNVLQTVPSDTFPDYPSLMKLTLSGNPIKQIKTGAFQPLSYLVTLELSKCGIEVIE--DA 165
+ P+ L + G + L L L+LS+ G+
Sbjct: 313 NCKFGQFPTLKLKSLKRLTFTSNKGG-----NAFSEVDLPSLEFLDLSRNGLSFKGCCSQ 367
Query: 166 AFVGLDSLEWLKLDNNKITTISGSNILPTGLHGIDLHHN 204
+ G SL++L L N + T+S + + L +D H+
Sbjct: 368 SDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHS 406
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance,
leucine-rich repeat glycoprotein, EGF-like domain,
signal protein; 2.8A {Drosophila melanogaster} SCOP:
c.10.2.7
Length = 192
Score = 95.5 bits (238), Expect = 1e-22
Identities = 53/245 (21%), Positives = 81/245 (33%), Gaps = 69/245 (28%)
Query: 18 CPTSCICKWKGGKQTVECVNKSLITVVEGMDPNTQVLDYTGNNLKTLHNEKFQKMGLVNL 77
CP C C+ TV+C + L + + +T L N L + ++
Sbjct: 2 CPAMCHCE----GTTVDCTGRGLKEIPRDIPLHTTELLLNDNELGRISSDG--------- 48
Query: 78 QKIYLSRCRISVIDSKAFRGLTNLVDLDFSHNVLQTVPSDTFPDYPSLMKLTLSGNPIKQ 137
F L +LV L+ N L + + F + +L L N IK+
Sbjct: 49 ----------------LFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKE 92
Query: 138 IKTGAFQPLSYLVTLELSKCGIEVIEDAAFVGLDSLEWLKLDNNKITTISGSNILPTG-- 195
I F GL L+ L L +N+I+ + G
Sbjct: 93 ISNKMFL------------------------GLHQLKTLNLYDNQISCV------MPGSF 122
Query: 196 -----LHGIDLHHNPWTCDCLLIGLRRWLESTKTPMAID-PICSVPPRLSSVTIKQLSID 249
L ++L NP+ C+C L WL K + C P ++ V IK L
Sbjct: 123 EHLNSLTSLNLASNPFNCNCHLAWFAEWLR--KKSLNGGAARCGAPSKVRDVQIKDLPHS 180
Query: 250 ELACE 254
E C
Sbjct: 181 EFKCS 185
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain,
protein binding, extra protein, structural genomics;
2.80A {Bacteroides thetaiotaomicron}
Length = 876
Score = 99 bits (249), Expect = 9e-22
Identities = 36/167 (21%), Positives = 57/167 (34%), Gaps = 18/167 (10%)
Query: 52 QVLDYTGNNLKTLHNEKFQKMGLVNLQKIYLSRCRISVIDSKAFRGLTNLVDLDFSHNVL 111
+LD N ++ L F V L + L +I I + L FSHN L
Sbjct: 576 GLLDCVHNKVRHLEA--FG--TNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKL 631
Query: 112 QTVPSDT-FPDYPSLMKLTLSGNPIKQIKTGAFQPLSY-----LVTLELSKCGIEVIEDA 165
+ +P+ + + S N I + T+ LS I+
Sbjct: 632 KYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTE 691
Query: 166 AFVGLDSLEWLKLDNNKITTISGSNILP--------TGLHGIDLHHN 204
F + + L NN +T+I +++ P L IDL N
Sbjct: 692 LFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFN 738
Score = 92.6 bits (230), Expect = 2e-19
Identities = 31/170 (18%), Positives = 53/170 (31%), Gaps = 19/170 (11%)
Query: 50 NTQVLDYTGNNLKTLHNEKFQKMGLVNLQKIYLSRCRISVI-------DSKAFRGLTNLV 102
N + + N ++ E F + I LS ++ I ++ L
Sbjct: 674 NASTVTLSYNEIQKFPTELFAT--GSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLT 731
Query: 103 DLDFSHNVLQTVPSD-TFPDYPSLMKLTLSGNPIKQIKTGAFQPLSYLVTLELSKC---- 157
+D N L ++ D P L + +S N T S L +
Sbjct: 732 TIDLRFNKLTSLSDDFRATTLPYLSNMDVSYNCFSSFPTQPLN-SSQLKAFGIRHQRDAE 790
Query: 158 --GIEVIEDAAFVGLDSLEWLKLDNNKITTISGSNILPTGLHGIDLHHNP 205
I SL L++ +N I + L L+ +D+ NP
Sbjct: 791 GNRILRQWPTGITTCPSLIQLQIGSNDIRKVDEK--LTPQLYILDIADNP 838
Score = 90.7 bits (225), Expect = 7e-19
Identities = 27/181 (14%), Positives = 62/181 (34%), Gaps = 19/181 (10%)
Query: 52 QVLDYTGNNLKTLHNEKFQKM-----GLVNLQKIYLSRCRISVI-DSKAFRGLTNLVDLD 105
+ + N + ++ + L I L +++ + D L L ++D
Sbjct: 700 STIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFRATTLPYLSNMD 759
Query: 106 FSHNVLQTVPSDTFPDYPSLMKLTL------SGNPIKQIKTGAFQPLSYLVTLELSKCGI 159
S+N + P+ + L + GN I + L+ L++ I
Sbjct: 760 VSYNCFSSFPTQPL-NSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDI 818
Query: 160 EVIEDAAFVGLDSLEWLKLDNNKITTISGSNILP---TGLHGIDLHHNPWTCDCLLIGLR 216
+++ L L + +N +I +++ P G++ + C +G+
Sbjct: 819 RKVDEKL---TPQLYILDIADNPNISIDVTSVCPYIEAGMYVLLYDKTQDIRGCDALGIE 875
Query: 217 R 217
R
Sbjct: 876 R 876
Score = 84.5 bits (209), Expect = 5e-17
Identities = 28/166 (16%), Positives = 51/166 (30%), Gaps = 15/166 (9%)
Query: 50 NTQVLDYTGNNLKTLHNEKFQKMGLVNLQKIYLSRCRISVIDSKAFRGLTNLVDLDFSHN 109
+ + + + L +L + L C L L L+ + N
Sbjct: 468 DWEDANSDYAKQYENEELSWS--NLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACN 525
Query: 110 VLQTVPS---------DTFPDYPSLMKLTLSGNPIKQI-KTGAFQPLSYLVTLELSKCGI 159
+ D P + + N +++ + + Q + L L+ +
Sbjct: 526 RGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKV 585
Query: 160 EVIEDAAFVGLDSLEWLKLDNNKITTI-SGSNILPTGLHGIDLHHN 204
+E AF L LKLD N+I I + G+ HN
Sbjct: 586 RHLE--AFGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHN 629
Score = 74.9 bits (184), Expect = 5e-14
Identities = 26/180 (14%), Positives = 51/180 (28%), Gaps = 33/180 (18%)
Query: 54 LDYTGNNLKTLHNEKFQKMGLVNLQKIYLSRCRISVI-------------------DSKA 94
+ N + + Q+ L LQ IY + + + +
Sbjct: 430 IGNLTNRITFISKA-IQR--LTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELS 486
Query: 95 FRGLTNLVDLDFSHNVLQTVPSDTFPDYPSLMKLTLSGNPIKQIK---------TGAFQP 145
+ L +L D++ + T D D P L L ++ N
Sbjct: 487 WSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDT 546
Query: 146 LSYLVTLELSKCGIEVI-EDAAFVGLDSLEWLKLDNNKITTISGSNILPTGLHGIDLHHN 204
+ + +E A+ + L L +NK+ + L + L +N
Sbjct: 547 GPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVRHLEAFGTN-VKLTDLKLDYN 605
Score = 63.4 bits (154), Expect = 2e-10
Identities = 27/172 (15%), Positives = 53/172 (30%), Gaps = 19/172 (11%)
Query: 46 GMDPNTQVLDYTGNNLKTLHNEKF-QKMGLVNLQKIYLSRC--RISVIDSKAFRGLTNLV 102
D + D + + K +K ++L+ + RI+ I SKA + LT L
Sbjct: 393 DYDQRLNLSDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITFI-SKAIQRLTKLQ 451
Query: 103 DLDFSHNVLQTVPSDTFPDYPSLMKLTLSGNPIKQIKTGAFQPLSYLVTLELSKCGIEVI 162
+ F+++ + + ++ L L +EL C
Sbjct: 452 IIYFANSPFTYDNIAVD-----WEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQ 506
Query: 163 EDAAFVGLDSLEWLKLDNNKITTISGSNILPTGLHG----------IDLHHN 204
L L+ L + N+ + + T L + +N
Sbjct: 507 LPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYN 558
Score = 58.0 bits (140), Expect = 8e-09
Identities = 27/152 (17%), Positives = 46/152 (30%), Gaps = 6/152 (3%)
Query: 76 NLQKIYLSRCRISVIDSKAFRGLTNLVDLDFSHNVLQTVPSDTFPDYPSLMKLTLSGNPI 135
+ + L+ A LT L L F + + + + I
Sbjct: 324 RVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRI 383
Query: 136 K-QIKTGAFQPLSYLVTLELSKCGIEVIEDAAFVGLDSLEWLK-----LDNNKITTISGS 189
+ K L +L + I + + DS LK N+IT IS +
Sbjct: 384 RMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITFISKA 443
Query: 190 NILPTGLHGIDLHHNPWTCDCLLIGLRRWLES 221
T L I ++P+T D + +
Sbjct: 444 IQRLTKLQIIYFANSPFTYDNIAVDWEDANSD 475
Score = 57.2 bits (138), Expect = 2e-08
Identities = 27/189 (14%), Positives = 49/189 (25%), Gaps = 26/189 (13%)
Query: 23 ICKWKGGKQTVECVNKSLITVVEGMDPNTQVLDYTGNNLKTLHNEKFQKMGLVNLQKIYL 82
+ W G + V+ N +T L G K + + L L+ +
Sbjct: 308 LDMW-GDQPGVDLDNNGRVTG----------LSLAGFGAKGRVPDAIGQ--LTELKVLSF 354
Query: 83 SRCRISVIDSKAF-RGLTNLVDLDFSHNVLQTVPSDTFPDYPSLMKLTLSGN------PI 135
+V LT + + H + L L + +
Sbjct: 355 GTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEM 414
Query: 136 KQIKTGAFQPLSYLVTLELSKCGIEVIEDAAFVGLDSLEWLKLDNNKITTISGSNILPTG 195
K IK + L + I I A L L+ + N+ T +
Sbjct: 415 KPIKKDSRISLKDT-QIGNLTNRITFISK-AIQRLTKLQIIYFANSPFTYD----NIAVD 468
Query: 196 LHGIDLHHN 204
+ +
Sbjct: 469 WEDANSDYA 477
Score = 42.6 bits (100), Expect = 5e-04
Identities = 12/123 (9%), Positives = 21/123 (17%), Gaps = 2/123 (1%)
Query: 83 SRCRISVIDSKAFRGLTNLVDLDFSHNVLQTVPSDTFPDYPSLMKLTLSGNPIKQIKTGA 142
+ L + + D L L+ +
Sbjct: 307 ELDMWGDQPGVDLDNNGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLF 366
Query: 143 FQPLSYLVTLELSKCGIEV-IEDAAFVGLDSLEWLKLDNNKITTISGSNILPTGLHGIDL 201
E K I + + L L + I + I L
Sbjct: 367 GDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKK-DSRISL 425
Query: 202 HHN 204
Sbjct: 426 KDT 428
Score = 38.3 bits (89), Expect = 0.010
Identities = 15/104 (14%), Positives = 31/104 (29%), Gaps = 2/104 (1%)
Query: 103 DLDFSHNVLQTVPSDTFPDYPSLMKLTLSGNPIKQIKTGAFQPLSYLVTLELSKCGIEVI 162
+ + ++ P + + L+L+G K A L+ L L V
Sbjct: 303 NFNKELDMWGDQPGVDLDNNGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVS 362
Query: 163 EDAAFVGLDSLEWLKLDNNKITTISGSNIL--PTGLHGIDLHHN 204
+ + + ++I L L+ DL +
Sbjct: 363 GRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQD 406
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1,
lipopeptide, innate immunity, glycoPro immune response,
inflammatory response, leucine-rich repeat membrane,
receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Length = 520
Score = 97.2 bits (242), Expect = 3e-21
Identities = 45/189 (23%), Positives = 67/189 (35%), Gaps = 28/189 (14%)
Query: 49 PNTQVLDYTGNNLKTLHNEKFQKMGLVNLQKIYLSRCRISVIDSK-AFRGLTNLVDLDFS 107
+ L N LK L + +LQ++ +S+ +S + K +L+ L+ S
Sbjct: 348 TELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMS 407
Query: 108 HNVLQTVPSDTFPDYPSLMKLTLSGNPIKQIKTGAFQPLSYLVTLELSKCGIEVIEDAAF 167
N+L P P + L L N IK I + L L L ++ ++ + D F
Sbjct: 408 SNILTDTIFRCLP--PRIKVLDLHSNKIKSIPKQVVK-LEALQELNVASNQLKSVPDGIF 464
Query: 168 VGLDSLEWLKLDNNKITTISGSNILPTGLHGIDLHHNPWTCDCLLIG-LRRWLESTKTPM 226
L SL+ + LH NPW C C I L RWL
Sbjct: 465 DRLTSLQKI-----------------------WLHTNPWDCSCPRIDYLSRWLNKNSQKE 501
Query: 227 AIDPICSVP 235
CS
Sbjct: 502 QGSAKCSGS 510
Score = 90.7 bits (225), Expect = 4e-19
Identities = 45/262 (17%), Positives = 82/262 (31%), Gaps = 32/262 (12%)
Query: 30 KQTVECVNKSLITVVEGMDPNTQVLDYTGNNLKTLHNEKFQKMGLVNLQKIYLSRCRISV 89
+ V+ LI V + + T +L+ + N IS
Sbjct: 2 EFLVDRSKNGLIHVPKDLSQKTTILNISQNY--------------------------ISE 35
Query: 90 IDSKAFRGLTNLVDLDFSHNVLQTVPSDTFPDYPSLMKLTLSGNPIKQIKTGAFQPLSYL 149
+ + L+ L L SHN +Q + F L L LS N + +I + P L
Sbjct: 36 LWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLVKI---SCHPTVNL 92
Query: 150 VTLELSKCGIEVI-EDAAFVGLDSLEWLKLDNNKITTISGSNILPTGLHGIDLHHNPWTC 208
L+LS + + F + L++L L + S I + + L
Sbjct: 93 KHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKSSVLPIAHLNISKVLLVLGETYG 152
Query: 209 DCLLIGL--RRWLESTKTPMAIDPICSVPPRLSSVTIKQLSIDELACEPQITPSTFYLEI 266
+ ES + +S T+ L + + C + +++L I
Sbjct: 153 EKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSI 212
Query: 267 QEGKNVSLLCKVSAIPEAKITW 288
+ + + TW
Sbjct: 213 LAKLQTNPKLSNLTLNNIETTW 234
Score = 71.0 bits (174), Expect = 6e-13
Identities = 28/202 (13%), Positives = 67/202 (33%), Gaps = 12/202 (5%)
Query: 34 ECVNKSLITVVEGMDPNTQVLDYTGNNLKTLHN---EKFQKMGLVNLQKIYLSRCRI--- 87
+ ++++ + N ++ + T NN++T N Q + + +S ++
Sbjct: 203 DNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQ 262
Query: 88 --SVIDSKAFRGLTNLVDLDFSHNVLQTVPSDTFPDYPSLMKLTLSGNPIKQIKTGAFQP 145
+ L L +V S + + ++ + + + +
Sbjct: 263 LDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSK 322
Query: 146 LSYLVTLELSKCGIEVIEDAAFVGLDSLEWLKLDNNKITTI---SGSNILPTGLHGIDLH 202
+S + L+ S + L LE L L N++ + + L +D+
Sbjct: 323 ISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDIS 382
Query: 203 HNPWTCDCLLIGLRRWLESTKT 224
N + D G W +S +
Sbjct: 383 QNSVSYD-EKKGDCSWTKSLLS 403
Score = 46.4 bits (110), Expect = 2e-05
Identities = 14/67 (20%), Positives = 31/67 (46%), Gaps = 3/67 (4%)
Query: 43 VVEGMDPNTQVLDYTGNNLKTLHNEKFQKMGLVNLQKIYLSRCRISVIDSKAFRGLTNLV 102
+ + P +VLD N +K++ + + L LQ++ ++ ++ + F LT+L
Sbjct: 415 IFRCLPPRIKVLDLHSNKIKSIPKQVVK---LEALQELNVASNQLKSVPDGIFDRLTSLQ 471
Query: 103 DLDFSHN 109
+ N
Sbjct: 472 KIWLHTN 478
>2wfh_A SLIT homolog 2 protein C-product; developmental protein,
neurogenesis, splicing, glycoprotein, leucine-rich
repeat, disulfide bond, differentiation; 1.80A {Homo
sapiens}
Length = 193
Score = 89.7 bits (223), Expect = 9e-21
Identities = 46/204 (22%), Positives = 69/204 (33%), Gaps = 54/204 (26%)
Query: 16 SACPTSCICKWKGGKQTVECVNKSLITVVEGMDPNTQVLDYTGNNLKTLHNEKFQKMGLV 75
S CPT C C V C NK L + +G+ + L GN +
Sbjct: 2 SRCPTECTC----LDTVVRCSNKGLKVLPKGIPRDVTELYLDGNQFTLV----------- 46
Query: 76 NLQKIYLSRCRISVIDSKAFRGLTNLVDLDFSHNVLQTVPSDTFPDYPSLMKLTLSGNPI 135
K +L +D S+N + T+ + +F + L+ L LS N +
Sbjct: 47 ----------------PKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRL 90
Query: 136 KQIKTGAFQPLSYLVTLELSKCGIEVIEDAAFVGLDSLEWLKLDNNKITTISGSNILPTG 195
+ I F L L L L I V+ + AF L +L
Sbjct: 91 RCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSH-------------------- 130
Query: 196 LHGIDLHHNPWTCDCLLIGLRRWL 219
+ + NP CDC + L W+
Sbjct: 131 ---LAIGANPLYCDCNMQWLSDWV 151
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain,
EF-hand domain; 1.6A {Listeria monocytogenes} SCOP:
b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A*
2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Length = 291
Score = 91.3 bits (227), Expect = 2e-20
Identities = 40/175 (22%), Positives = 69/175 (39%), Gaps = 15/175 (8%)
Query: 32 TVECVNKSLITVVEGMD--PNTQVLDYTGNNLKTLHNEKFQKMGLVNLQKIYLSRCRISV 89
+ + K +T + + + +++K++ Q L N+ K++L+ +++
Sbjct: 27 IKDNLKKKSVTDAVTQNELNSIDQIIANNSDIKSVQG--IQ--YLPNVTKLFLNGNKLTD 82
Query: 90 IDSKAFRGLTNLVDLDFSHNVLQTVPSDTFPDYPSLMKLTLSGNPIKQIKTGAFQPLSYL 149
I K L NL L N ++ + S D L L+L N I I L L
Sbjct: 83 I--KPLANLKNLGWLFLDENKVKDLSS--LKDLKKLKSLSLEHNGISDIN--GLVHLPQL 136
Query: 150 VTLELSKCGIEVIEDAAFVGLDSLEWLKLDNNKITTISGSNILPTGLHGIDLHHN 204
+L L I I L L+ L L++N+I+ I L L + L N
Sbjct: 137 ESLYLGNNKITDIT--VLSRLTKLDTLSLEDNQISDIVPLAGLTK-LQNLYLSKN 188
Score = 87.8 bits (218), Expect = 3e-19
Identities = 43/169 (25%), Positives = 60/169 (35%), Gaps = 15/169 (8%)
Query: 41 ITVVEGMD--PNTQVLDYTGNNLKTLHNEKFQKMGLVNLQKIYLSRCRISVIDSKAFRGL 98
I V+G+ PN L GN L + L NL ++L ++ + S + L
Sbjct: 58 IKSVQGIQYLPNVTKLFLNGNKLTDIKPLA----NLKNLGWLFLDENKVKDLSS--LKDL 111
Query: 99 TNLVDLDFSHNVLQTVPSDTFPDYPSLMKLTLSGNPIKQIKTGAFQPLSYLVTLELSKCG 158
L L HN + + P L L L N I I L+ L TL L
Sbjct: 112 KKLKSLSLEHNGISDING--LVHLPQLESLYLGNNKITDIT--VLSRLTKLDTLSLEDNQ 167
Query: 159 IEVIEDAAFVGLDSLEWLKLDNNKITTISGSNILPTGLHGIDLHHNPWT 207
I I GL L+ L L N I+ + L L ++L
Sbjct: 168 ISDIVP--LAGLTKLQNLYLSKNHISDLRALAGLKN-LDVLELFSQECL 213
Score = 76.6 bits (189), Expect = 2e-15
Identities = 28/132 (21%), Positives = 57/132 (43%), Gaps = 9/132 (6%)
Query: 73 GLVNLQKIYLSRCRISVIDSKAFRGLTNLVDLDFSHNVLQTVPSDTFPDYPSLMKLTLSG 132
K L + ++ + L ++ + +++ +++V P++ KL L+G
Sbjct: 22 AFAETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIKSVQG--IQYLPNVTKLFLNG 77
Query: 133 NPIKQIKTGAFQPLSYLVTLELSKCGIEVIEDAAFVGLDSLEWLKLDNNKITTISGSNIL 192
N + IK L L L L + ++ + + L L+ L L++N I+ I+G L
Sbjct: 78 NKLTDIK--PLANLKNLGWLFLDENKVKDLS--SLKDLKKLKSLSLEHNGISDINGLVHL 133
Query: 193 PTGLHGIDLHHN 204
L + L +N
Sbjct: 134 -PQLESLYLGNN 144
Score = 53.9 bits (130), Expect = 7e-08
Identities = 18/91 (19%), Positives = 33/91 (36%), Gaps = 7/91 (7%)
Query: 116 SDTFPD--YPSLMKLTLSGNPIKQIKTGAFQPLSYLVTLELSKCGIEVIEDAAFVGLDSL 173
F D + +K L + T L+ + + + I+ ++ L ++
Sbjct: 15 KQIFSDDAFAETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIKSVQ--GIQYLPNV 70
Query: 174 EWLKLDNNKITTISGSNILPTGLHGIDLHHN 204
L L+ NK+T I L L + L N
Sbjct: 71 TKLFLNGNKLTDIKPLANLKN-LGWLFLDEN 100
>4fmz_A Internalin; leucine rich repeat, structural genomic center for
structural genomics, JCSG, protein structure INI
PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes
serotype 4B}
Length = 347
Score = 92.2 bits (230), Expect = 2e-20
Identities = 31/167 (18%), Positives = 55/167 (32%), Gaps = 13/167 (7%)
Query: 41 ITVVEGMDPNT--QVLDYTGNNLKTLHNEKFQKMGLVNLQKIYLSRCRISVIDSKAFRGL 98
I + + T N + + + L + + +I+ + L
Sbjct: 189 IEDISPLASLTSLHYFTAYVNQITDITPVA----NMTRLNSLKIGNNKITDLS--PLANL 242
Query: 99 TNLVDLDFSHNVLQTVPSDTFPDYPSLMKLTLSGNPIKQIKTGAFQPLSYLVTLELSKCG 158
+ L L+ N + + + D L L + N I I LS L +L L+
Sbjct: 243 SQLTWLEIGTNQISDINA--VKDLTKLKMLNVGSNQISDIS--VLNNLSQLNSLFLNNNQ 298
Query: 159 IEVIEDAAFVGLDSLEWLKLDNNKITTISGSNILPTGLHGIDLHHNP 205
+ + GL +L L L N IT I L + + D +
Sbjct: 299 LGNEDMEVIGGLTNLTTLFLSQNHITDIRPLASL-SKMDSADFANQV 344
Score = 89.1 bits (222), Expect = 3e-19
Identities = 36/172 (20%), Positives = 69/172 (40%), Gaps = 14/172 (8%)
Query: 35 CVNKSLITVVEGMD--PNTQVLDYTGNNLKTLHNEKFQKMGLVNLQKIYLSRCRISVIDS 92
V + ++G++ N + L+ GN + + LV L +Y+ +I+ I
Sbjct: 50 VVAGEKVASIQGIEYLTNLEYLNLNGNQITDISPLS----NLVKLTNLYIGTNKITDIS- 104
Query: 93 KAFRGLTNLVDLDFSHNVLQTVPSDTFPDYPSLMKLTLSGNPIKQIKTGAFQPLSYLVTL 152
A + LTNL +L + + + + + + L L N + ++ L L
Sbjct: 105 -ALQNLTNLRELYLNEDNISDISP--LANLTKMYSLNLGANHNLSDLS-PLSNMTGLNYL 160
Query: 153 ELSKCGIEVIEDAAFVGLDSLEWLKLDNNKITTISGSNILPTGLHGIDLHHN 204
+++ ++ + L L L L+ N+I IS L T LH + N
Sbjct: 161 TVTESKVKDVT--PIANLTDLYSLSLNYNQIEDISPLASL-TSLHYFTAYVN 209
Score = 83.4 bits (207), Expect = 2e-17
Identities = 29/153 (18%), Positives = 54/153 (35%), Gaps = 13/153 (8%)
Query: 52 QVLDYTGNNLKTLHNEKFQKMGLVNLQKIYLSRCRISVIDSKAFRGLTNLVDLDFSHNVL 111
L + + + L + L + ++ + L ++ L + +
Sbjct: 3 ATLATLPAPINQIFPDA----DLAEGIRAVLQKASVTDV--VTQEELESITKLVVAGEKV 56
Query: 112 QTVPSDTFPDYPSLMKLTLSGNPIKQIKTGAFQPLSYLVTLELSKCGIEVIEDAAFVGLD 171
++ +L L L+GN I I L L L + I I A L
Sbjct: 57 ASIQG--IEYLTNLEYLNLNGNQITDIS--PLSNLVKLTNLYIGTNKITDIS--ALQNLT 110
Query: 172 SLEWLKLDNNKITTISGSNILPTGLHGIDLHHN 204
+L L L+ + I+ IS L T ++ ++L N
Sbjct: 111 NLRELYLNEDNISDISPLANL-TKMYSLNLGAN 142
Score = 69.5 bits (171), Expect = 9e-13
Identities = 22/136 (16%), Positives = 38/136 (27%), Gaps = 32/136 (23%)
Query: 49 PNTQVLDYTGNNLKTLHNEKFQKMGLVNLQKIYLSRCRISVIDSKAFRGLTNLVDLDFSH 108
L+ N + + + L L+ + + +IS I L+ L L ++
Sbjct: 243 SQLTWLEIGTNQISDI--NAVKD--LTKLKMLNVGSNQISDI--SVLNNLSQLNSLFLNN 296
Query: 109 NVLQTVPSDTFPDYPSLMKLTLSGNPIKQIKTGAFQPLSYLVTLELSKCGIEVIEDAAFV 168
N L + +L L LS N I I+
Sbjct: 297 NQLGNEDMEVIGGLTNLTTLFLSQNHITDIR--------------------------PLA 330
Query: 169 GLDSLEWLKLDNNKIT 184
L ++ N I
Sbjct: 331 SLSKMDSADFANQVIK 346
Score = 63.3 bits (155), Expect = 9e-11
Identities = 18/99 (18%), Positives = 37/99 (37%), Gaps = 8/99 (8%)
Query: 41 ITVVEGMDPNT--QVLDYTGNNLKTLHNEKFQKMGLVNLQKIYLSRCRISVIDSKAFRGL 98
I+ + + T ++L+ N + + L L ++L+ ++ D + GL
Sbjct: 255 ISDINAVKDLTKLKMLNVGSNQISDISVLN----NLSQLNSLFLNNNQLGNEDMEVIGGL 310
Query: 99 TNLVDLDFSHNVLQTVPSDTFPDYPSLMKLTLSGNPIKQ 137
TNL L S N + + + + IK+
Sbjct: 311 TNLTTLFLSQNHITDIRP--LASLSKMDSADFANQVIKK 347
Score = 52.9 bits (128), Expect = 2e-07
Identities = 19/80 (23%), Positives = 31/80 (38%), Gaps = 5/80 (6%)
Query: 125 LMKLTLSGNPIKQIKTGAFQPLSYLVTLELSKCGIEVIEDAAFVGLDSLEWLKLDNNKIT 184
L PI QI L+ + L K + + L+S+ L + K+
Sbjct: 2 AATLATLPAPINQIFP--DADLAEGIRAVLQKASVTDVV--TQEELESITKLVVAGEKVA 57
Query: 185 TISGSNILPTGLHGIDLHHN 204
+I G L T L ++L+ N
Sbjct: 58 SIQGIEYL-TNLEYLNLNGN 76
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR,
immune system; 1.50A {Eptatretus burgeri}
Length = 208
Score = 88.6 bits (220), Expect = 4e-20
Identities = 60/210 (28%), Positives = 87/210 (41%), Gaps = 44/210 (20%)
Query: 18 CPTSCICKWKGGKQTVECVNKSLITVVEGMDPNTQVLDYTGNNLKTLHNEKFQKMGLVNL 77
CP+ C C TVEC ++ +V G+ T LD N+LK+L
Sbjct: 1 CPSRCSC----SGTTVECYSQGRTSVPTGIPAQTTYLDLETNSLKSL------------- 43
Query: 78 QKIYLSRCRISVIDSKAFRGLTNLVDLDFSHNVLQTVPSDTFPDYPSLMKLTLSGNPIKQ 137
+ F LT+L L N LQ++P+ F SL L LS N ++
Sbjct: 44 -------------PNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQS 90
Query: 138 IKTGAFQPLSYLVTLELSKCGIEVIEDAAFVGLDSLEWLKLDNNKITTISGSNILPTG-- 195
+ G F L+ L L L+ ++ + D F L L+ L+L N++ ++ P G
Sbjct: 91 LPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSV------PDGVF 144
Query: 196 -----LHGIDLHHNPWTCDCLLIG-LRRWL 219
L I LH NPW C C I L W+
Sbjct: 145 DRLTSLQYIWLHDNPWDCTCPGIRYLSEWI 174
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain,
EF-hand domain; 1.8A {Listeria monocytogenes} SCOP:
b.1.18.15 c.10.2.1
Length = 308
Score = 90.5 bits (225), Expect = 5e-20
Identities = 40/173 (23%), Positives = 64/173 (36%), Gaps = 15/173 (8%)
Query: 35 CVNKSLITVVEGMD--PNTQVLDYTGNNLKTLHNEKFQKMGLVNLQKIYLSRCRISVIDS 92
+ +T +EG+ N L+ N + L K L + ++ LS + +
Sbjct: 47 SAFGTGVTTIEGVQYLNNLIGLELKDNQITDLAPLK----NLTKITELELSGNPLKNV-- 100
Query: 93 KAFRGLTNLVDLDFSHNVLQTVPSDTFPDYPSLMKLTLSGNPIKQIKTGAFQPLSYLVTL 152
A GL ++ LD + + V +L L L N I I L+ L L
Sbjct: 101 SAIAGLQSIKTLDLTSTQITDVTP--LAGLSNLQVLYLDLNQITNIS--PLAGLTNLQYL 156
Query: 153 ELSKCGIEVIEDAAFVGLDSLEWLKLDNNKITTISGSNILPTGLHGIDLHHNP 205
+ + + L L LK D+NKI+ IS L L + L +N
Sbjct: 157 SIGNAQVSDLT--PLANLSKLTTLKADDNKISDISPLASL-PNLIEVHLKNNQ 206
Score = 90.5 bits (225), Expect = 6e-20
Identities = 39/172 (22%), Positives = 66/172 (38%), Gaps = 15/172 (8%)
Query: 35 CVNKSLITVVEGMD--PNTQVLDYTGNNLKTLHNEKFQKMGLVNLQKIYLSRCRISVIDS 92
KS +T L G + T+ E Q L NL + L +I+ +
Sbjct: 25 AAGKSNVTDTVTQADLDGITTLSAFGTGVTTI--EGVQ--YLNNLIGLELKDNQITDLA- 79
Query: 93 KAFRGLTNLVDLDFSHNVLQTVPSDTFPDYPSLMKLTLSGNPIKQIKTGAFQPLSYLVTL 152
+ LT + +L+ S N L+ V + S+ L L+ I + LS L L
Sbjct: 80 -PLKNLTKITELELSGNPLKNVSA--IAGLQSIKTLDLTSTQITDVT--PLAGLSNLQVL 134
Query: 153 ELSKCGIEVIEDAAFVGLDSLEWLKLDNNKITTISGSNILPTGLHGIDLHHN 204
L I I GL +L++L + N +++ ++ L + L + N
Sbjct: 135 YLDLNQITNIS--PLAGLTNLQYLSIGNAQVSDLTPLANL-SKLTTLKADDN 183
Score = 82.8 bits (205), Expect = 2e-17
Identities = 34/159 (21%), Positives = 61/159 (38%), Gaps = 13/159 (8%)
Query: 49 PNTQVLDYTGNNLKTLHNEKFQKMGLVNLQKIYLSRCRISVIDSKAFRGLTNLVDLDFSH 108
L+ +GN LK + GL +++ + L+ +I+ + GL+NL L
Sbjct: 85 TKITELELSGNPLKNVSAIA----GLQSIKTLDLTSTQITDVT--PLAGLSNLQVLYLDL 138
Query: 109 NVLQTVPSDTFPDYPSLMKLTLSGNPIKQIKTGAFQPLSYLVTLELSKCGIEVIEDAAFV 168
N + + +L L++ + + LS L TL+ I I
Sbjct: 139 NQITNISP--LAGLTNLQYLSIGNAQVSDLT--PLANLSKLTTLKADDNKISDIS--PLA 192
Query: 169 GLDSLEWLKLDNNKITTISGSNILPTGLHGIDLHHNPWT 207
L +L + L NN+I+ +S L + L + T
Sbjct: 193 SLPNLIEVHLKNNQISDVSPLANTSN-LFIVTLTNQTIT 230
Score = 77.8 bits (192), Expect = 1e-15
Identities = 33/149 (22%), Positives = 51/149 (34%), Gaps = 14/149 (9%)
Query: 41 ITVVEGMD--PNTQVLDYTGNNLKTLHNEKFQKMGLVNLQKIYLSRCRISVIDSKAFRGL 98
+ V + + + LD T + + GL NLQ +YL +I+ I GL
Sbjct: 97 LKNVSAIAGLQSIKTLDLTSTQITDVTPLA----GLSNLQVLYLDLNQITNIS--PLAGL 150
Query: 99 TNLVDLDFSHNVLQTVPSDTFPDYPSLMKLTLSGNPIKQIKTGAFQPLSYLVTLELSKCG 158
TNL L + + + + L L N I I L L+ + L
Sbjct: 151 TNLQYLSIGNAQVSDLTP--LANLSKLTTLKADDNKISDIS--PLASLPNLIEVHLKNNQ 206
Query: 159 IEVIEDAAFVGLDSLEWLKLDNNKITTIS 187
I + +L + L N IT
Sbjct: 207 ISDVS--PLANTSNLFIVTLTNQTITNQP 233
Score = 67.0 bits (164), Expect = 4e-12
Identities = 22/108 (20%), Positives = 39/108 (36%), Gaps = 7/108 (6%)
Query: 97 GLTNLVDLDFSHNVLQTVPSDTFPDYPSLMKLTLSGNPIKQIKTGAFQPLSYLVTLELSK 156
L N + + + + T D + L+ G + I+ Q L+ L+ LEL
Sbjct: 17 ALANAIKIAAGKSNVTDTV--TQADLDGITTLSAFGTGVTTIE--GVQYLNNLIGLELKD 72
Query: 157 CGIEVIEDAAFVGLDSLEWLKLDNNKITTISGSNILPTGLHGIDLHHN 204
I + L + L+L N + +S L + +DL
Sbjct: 73 NQITDLA--PLKNLTKITELELSGNPLKNVSAIAGL-QSIKTLDLTST 117
Score = 51.6 bits (124), Expect = 4e-07
Identities = 21/114 (18%), Positives = 36/114 (31%), Gaps = 10/114 (8%)
Query: 41 ITVVEGMD--PNTQVLDYTGNNLKTLHNEKFQKMGLVNLQKIYLSRCRISVIDSKAFRGL 98
IT + + N Q L + L L L + +IS I L
Sbjct: 141 ITNISPLAGLTNLQYLSIGNAQVSDLTPLA----NLSKLTTLKADDNKISDIS--PLASL 194
Query: 99 TNLVDLDFSHNVLQTVPSDTFPDYPSLMKLTLSGNPIKQIKTGAFQPLSYLVTL 152
NL+++ +N + V + +L +TL+ I L +
Sbjct: 195 PNLIEVHLKNNQISDVSP--LANTSNLFIVTLTNQTITNQPVFYNNNLVVPNVV 246
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling
protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15
b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Length = 605
Score = 92.9 bits (230), Expect = 1e-19
Identities = 61/327 (18%), Positives = 106/327 (32%), Gaps = 24/327 (7%)
Query: 32 TVECVNKSLITVVEGMD--PNTQVLDYTGNNLKTLHNEKFQKMGLVNLQKIYLSRCRISV 89
+ + K +T + + + +++K++ Q L N+ K++L+ +++
Sbjct: 24 IKDNLKKKSVTDAVTQNELNSIDQIIANNSDIKSVQG--IQY--LPNVTKLFLNGNKLTD 79
Query: 90 IDSKAFRGLTNLVDLDFSHNVLQTVPSDTFPDYPSLMKLTLSGNPIKQIKTGAFQPLSYL 149
I K L NL L N ++ + S D L L+L N I I L L
Sbjct: 80 I--KPLTNLKNLGWLFLDENKIKDLSS--LKDLKKLKSLSLEHNGISDIN--GLVHLPQL 133
Query: 150 VTLELSKCGIEVIEDAAFVGLDSLEWLKLDNNKITTISGSNILPTGLHGIDLHHNPWTCD 209
+L L I I L L+ L L++N+I+ I L L + L N +
Sbjct: 134 ESLYLGNNKITDIT--VLSRLTKLDTLSLEDNQISDIVPLAGLTK-LQNLYLSKNHISDL 190
Query: 210 CLLIGLR--RWLESTKTPMAIDPICSVPPRLSSVTIKQLSIDELACEPQITPSTFYLEIQ 267
L GL+ LE PI + T+K L I+ Y +
Sbjct: 191 RALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDG-SLVTPEIISDDGDYEKPN 249
Query: 268 EGKNVSLLCK------VSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSE 321
++ + K F G Q + S+ V T T+++
Sbjct: 250 VKWHLPEFTNEVSFIFYQPVTIGKAKARFHGRVTQPLKEVYTVSYDVDGTVIKTKVEAGT 309
Query: 322 LLIYNSNIDDNGTFVCVAENQAGSTSS 348
+ G +
Sbjct: 310 RITAPKPPTKQGYVFKGWYTEKNGGHE 336
Score = 75.9 bits (186), Expect = 2e-14
Identities = 31/151 (20%), Positives = 63/151 (41%), Gaps = 13/151 (8%)
Query: 54 LDYTGNNLKTLHNEKFQKMGLVNLQKIYLSRCRISVIDSKAFRGLTNLVDLDFSHNVLQT 113
+K + + K L + ++ ++ L ++ + +++ +++
Sbjct: 4 TITVSTPIKQIFPDD----AFAETIKDNLKKKSVTDAVTQN--ELNSIDQIIANNSDIKS 57
Query: 114 VPSDTFPDYPSLMKLTLSGNPIKQIKTGAFQPLSYLVTLELSKCGIEVIEDAAFVGLDSL 173
V P++ KL L+GN + IK L L L L + I+ + + L L
Sbjct: 58 VQG--IQYLPNVTKLFLNGNKLTDIK--PLTNLKNLGWLFLDENKIKDLS--SLKDLKKL 111
Query: 174 EWLKLDNNKITTISGSNILPTGLHGIDLHHN 204
+ L L++N I+ I+G LP L + L +N
Sbjct: 112 KSLSLEHNGISDINGLVHLP-QLESLYLGNN 141
Score = 48.2 bits (114), Expect = 8e-06
Identities = 15/80 (18%), Positives = 31/80 (38%), Gaps = 5/80 (6%)
Query: 125 LMKLTLSGNPIKQIKTGAFQPLSYLVTLELSKCGIEVIEDAAFVGLDSLEWLKLDNNKIT 184
+ + PIKQI + + L K + L+S++ + +N+ I
Sbjct: 1 MGETITVSTPIKQIF--PDDAFAETIKDNLKKKSVTDAVTQN--ELNSIDQIIANNSDIK 56
Query: 185 TISGSNILPTGLHGIDLHHN 204
++ G L + + L+ N
Sbjct: 57 SVQGIQYL-PNVTKLFLNGN 75
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell
WALL attached, leucine rich repeat; 1.5A {Listeria
monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A*
1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Length = 466
Score = 91.2 bits (227), Expect = 2e-19
Identities = 41/169 (24%), Positives = 64/169 (37%), Gaps = 15/169 (8%)
Query: 41 ITVVEGMD--PNTQVLDYTGNNLKTLHNEKFQKMGLVNLQKIYLSRCRISVIDSKAFRGL 98
I+ + + N L GN LK + L NL + L+ +IS + GL
Sbjct: 211 ISDITPLGILTNLDELSLNGNQLKDIGTLA----SLTNLTDLDLANNQISNLA--PLSGL 264
Query: 99 TNLVDLDFSHNVLQTVPSDTFPDYPSLMKLTLSGNPIKQIKTGAFQPLSYLVTLELSKCG 158
T L +L N + + +L L L+ N ++ I L L L L
Sbjct: 265 TKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDIS--PISNLKNLTYLTLYFNN 320
Query: 159 IEVIEDAAFVGLDSLEWLKLDNNKITTISGSNILPTGLHGIDLHHNPWT 207
I I L L+ L NNK++ +S L T ++ + HN +
Sbjct: 321 ISDIS--PVSSLTKLQRLFFYNNKVSDVSSLANL-TNINWLSAGHNQIS 366
Score = 84.6 bits (210), Expect = 2e-17
Identities = 39/153 (25%), Positives = 64/153 (41%), Gaps = 14/153 (9%)
Query: 52 QVLDYTGNNLKTLHNEKFQKMGLVNLQKIYLSRCRISVIDSKAFRGLTNLVDLDFSHNVL 111
+ N + + L NL + L +I+ ID + LTNL L+ S N +
Sbjct: 93 VDILMNNNQIADITPLA----NLTNLTGLTLFNNQITDID--PLKNLTNLNRLELSSNTI 146
Query: 112 QTVPSDTFPDYPSLMKLTLSGNPIKQIKTGAFQPLSYLVTLELSKCGIEVIEDAAFVGLD 171
+ + SL +L+ N + +K L+ L L++S + I L
Sbjct: 147 SDISA--LSGLTSLQQLSFG-NQVTDLK--PLANLTTLERLDISSNKVSDIS--VLAKLT 199
Query: 172 SLEWLKLDNNKITTISGSNILPTGLHGIDLHHN 204
+LE L NN+I+ I+ IL T L + L+ N
Sbjct: 200 NLESLIATNNQISDITPLGIL-TNLDELSLNGN 231
Score = 83.1 bits (206), Expect = 8e-17
Identities = 39/173 (22%), Positives = 72/173 (41%), Gaps = 18/173 (10%)
Query: 35 CVNKSLITVVEGMD--PNTQVLDYTGNNLKTLHNEKFQKMGLVNLQKIYLSRCRISVIDS 92
++ I ++G++ N ++++ N L + K L L I ++ +I+ I
Sbjct: 52 QADRLGIKSIDGVEYLNNLTQINFSNNQLTDITPLK----NLTKLVDILMNNNQIADIT- 106
Query: 93 KAFRGLTNLVDLDFSHNVLQTVPSDTFPDYPSLMKLTLSGNPIKQIKTGAFQPLSYLVTL 152
LTNL L +N + + + +L +L LS N I I A L+ L L
Sbjct: 107 -PLANLTNLTGLTLFNNQITDID--PLKNLTNLNRLELSSNTISDIS--ALSGLTSLQQL 161
Query: 153 ELSKCGIEVIEDAAFVGLDSLEWLKLDNNKITTISG-SNILPTGLHGIDLHHN 204
++ L +LE L + +NK++ IS + + T L + +N
Sbjct: 162 SFGNQVTDLK---PLANLTTLERLDISSNKVSDISVLAKL--TNLESLIATNN 209
Score = 76.5 bits (189), Expect = 8e-15
Identities = 29/150 (19%), Positives = 57/150 (38%), Gaps = 13/150 (8%)
Query: 59 NNLKTLHNEKFQKM----GLVNLQKIYLSRCRISVIDSKAFRGLTNLVDLDFSHNVLQTV 114
+ + ++ L K L + ++ D+ + L + L ++++
Sbjct: 4 GSATITQDTPINQIFTDTALAEKMKTVLGKTNVT--DTVSQTDLDQVTTLQADRLGIKSI 61
Query: 115 PSDTFPDYPSLMKLTLSGNPIKQIKTGAFQPLSYLVTLELSKCGIEVIEDAAFVGLDSLE 174
+L ++ S N + I + L+ LV + ++ I I L +L
Sbjct: 62 DG--VEYLNNLTQINFSNNQLTDIT--PLKNLTKLVDILMNNNQIADIT--PLANLTNLT 115
Query: 175 WLKLDNNKITTISGSNILPTGLHGIDLHHN 204
L L NN+IT I L T L+ ++L N
Sbjct: 116 GLTLFNNQITDIDPLKNL-TNLNRLELSSN 144
Score = 30.7 bits (70), Expect = 1.8
Identities = 8/107 (7%), Positives = 24/107 (22%), Gaps = 27/107 (25%)
Query: 49 PNTQVLDYTGNNLKTLHNEKFQKMGLVNLQKIYLSRCRISVIDSKAFRGL---------- 98
N L N + L L + ++ L+ + +
Sbjct: 353 TNINWLSAGHNQISDLTPLA----NLTRITQLGLNDQAWTNAPVNYKANVSIPNTVKNVT 408
Query: 99 ------------TNLVDLDFSHNVLQTVPSDTFPDYPSLMKLTLSGN 133
+ + D + N+ ++ + + +
Sbjct: 409 GALIAPATISDGGSYTEPDITWNLPSYTNEVSY-TFSQPVTIGKGTT 454
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte
receptors, VLR, leucine-rich repeat, LRR adaptive
immunity, immune system; HET: DR2; 1.67A {Petromyzon
marinus}
Length = 229
Score = 86.3 bits (214), Expect = 3e-19
Identities = 53/211 (25%), Positives = 75/211 (35%), Gaps = 45/211 (21%)
Query: 17 ACPTSCICKWKGGKQTVECVNKSLITVVEGMDPNTQVLDYTGNNLKTLHNEKFQKMGLVN 76
ACP+ C C TV+C +K +V G+ N Q+L N + L
Sbjct: 12 ACPSQCSC----SGTTVDCRSKRHASVPAGIPTNAQILYLHDNQITKL------------ 55
Query: 77 LQKIYLSRCRISVIDSKAFRGLTNLVDLDFSHNVLQTVPSDTFPDYPSLMKLTLSGNPIK 136
+ F L NL +L N L +P F L L L N +
Sbjct: 56 --------------EPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLT 101
Query: 137 QIKTGAFQPLSYLVTLELSKCGIEVIEDAAFVGLDSLEWLKLDNNKITTISGSNILPTG- 195
+ + F L +L L + + + L L L LD N++ +I P G
Sbjct: 102 VLPSAVFDRLVHLKELFMCCNKLTELPR-GIERLTHLTHLALDQNQLKSI------PHGA 154
Query: 196 ------LHGIDLHHNPWTCDCLLIG-LRRWL 219
L L NPW C+C I LR W+
Sbjct: 155 FDRLSSLTHAYLFGNPWDCECRDIMYLRNWV 185
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding,
structural genomics, center for structural genomics,
JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Length = 636
Score = 90.9 bits (226), Expect = 5e-19
Identities = 34/172 (19%), Positives = 60/172 (34%), Gaps = 19/172 (11%)
Query: 49 PNTQVLDYTGNNLKTLHNEKFQKMGLVNLQKIYLSRCRISVIDSKAFRGLTNLVDLDFSH 108
+L+ N L+ F + L + L+ +I+ I + + +L F+H
Sbjct: 330 KKLGMLECLYNQLEGKLPA-FGS--EIKLASLNLAYNQITEIPANFCGFTEQVENLSFAH 386
Query: 109 NVLQTVPSDTFPDY-PSLMKLTLSGNPIKQIKTGAFQPLSY-------LVTLELSKCGIE 160
N L+ +P+ + + S N I + F PL + ++ LS I
Sbjct: 387 NKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQIS 446
Query: 161 VIEDAAFVGLDSLEWLKLDNNKITTISGSNILP--------TGLHGIDLHHN 204
F L + L N +T I +++ L IDL N
Sbjct: 447 KFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFN 498
Score = 82.0 bits (203), Expect = 3e-16
Identities = 30/175 (17%), Positives = 62/175 (35%), Gaps = 25/175 (14%)
Query: 52 QVLDYTGNNLKTLHNEKFQKM-----GLVNLQKIYLSRCRISVIDSKAFRGLTNLVDLDF 106
+D++ N + ++ + F + +N+ I LS +IS + F + L ++
Sbjct: 405 SAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINL 464
Query: 107 SHNVLQTVPSDTFPDYP-------SLMKLTLSGNPIKQI-KTGAFQPLSYLVTLELSKCG 158
N+L +P ++ D L + L N + ++ L YLV ++LS
Sbjct: 465 MGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNS 524
Query: 159 IEVIEDAAFVGLDSLEWLKLDNNKITTISGSNI---LP------TGLHGIDLHHN 204
+L+ + N + G+ P L + + N
Sbjct: 525 FSKFPTQPL-NSSTLKGFGIRNQRD--AQGNRTLREWPEGITLCPSLTQLQIGSN 576
Score = 81.2 bits (201), Expect = 4e-16
Identities = 26/169 (15%), Positives = 55/169 (32%), Gaps = 17/169 (10%)
Query: 52 QVLDYTGNNLKTL------HNEKFQKMGLVNLQKIYLSRCRISVID-SKAFRGLTNLVDL 104
Q+++ N + +Q IY+ + + + + L L
Sbjct: 276 QLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGML 335
Query: 105 DFSHNVLQTVPSDTFPDYPSLMKLTLSGNPIKQIKTGAFQPLSYLVTLELSKCGIEVIED 164
+ +N L+ F L L L+ N I +I + L + ++ I +
Sbjct: 336 ECLYNQLEGKL-PAFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLKYIPN 394
Query: 165 AAFVG-LDSLEWLKLDNNKITTISGSNILP--------TGLHGIDLHHN 204
+ + + N+I ++ G N P + I+L +N
Sbjct: 395 IFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNN 443
Score = 76.2 bits (188), Expect = 2e-14
Identities = 26/181 (14%), Positives = 58/181 (32%), Gaps = 19/181 (10%)
Query: 52 QVLDYTGNNLKTLHNEKFQKM-----GLVNLQKIYLSRCRISVI-DSKAFRGLTNLVDLD 105
++ GN L + + L I L +++ + D L LV +D
Sbjct: 460 SSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGID 519
Query: 106 FSHNVLQTVPSDTFPDYPSLMKLTLSGNPI----KQIKT--GAFQPLSYLVTLELSKCGI 159
S+N P+ + +L + + ++ L L++ I
Sbjct: 520 LSYNSFSKFPTQPL-NSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDI 578
Query: 160 EVIEDAAFVGLDSLEWLKLDNNKITTISGSNILP-TGLHGIDLHHNPWT--CDCLLIGLR 216
+ + ++ L + +N +I S + P L ++ C + ++
Sbjct: 579 RKVNEKI---TPNISVLDIKDNPNISIDLSYVCPYIEAGMYMLFYDKTQDIRGCDALDIK 635
Query: 217 R 217
R
Sbjct: 636 R 636
Score = 67.0 bits (164), Expect = 1e-11
Identities = 25/145 (17%), Positives = 45/145 (31%), Gaps = 17/145 (11%)
Query: 73 GLVNLQKIYLSRCRISVIDSKAFRGLTNLVDLDFSHNVLQTVPSDT--------FPDYPS 124
L +L + + C + L + ++ + N + P
Sbjct: 247 NLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEK 306
Query: 125 LMKLTLSGNPIKQIKTG----AFQPLSYLVTLELSKCGIEVIEDAAFVGLDSLEWLKLDN 180
+ + + N +KT + Q + L LE +E AF L L L
Sbjct: 307 IQIIYIGYN---NLKTFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAY 362
Query: 181 NKITTI-SGSNILPTGLHGIDLHHN 204
N+IT I + + + HN
Sbjct: 363 NQITEIPANFCGFTEQVENLSFAHN 387
Score = 55.8 bits (135), Expect = 4e-08
Identities = 18/158 (11%), Positives = 40/158 (25%), Gaps = 16/158 (10%)
Query: 50 NTQVLDYTGNNLKTLHNEKFQKMGLVNLQKIYLSRCRISVIDSKAFRGLTNLVDLDFSHN 109
+ Y + E F +L K ++ K+ R + N
Sbjct: 139 QKMRMHYQKTFVDYDPREDFS-----DLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSN 193
Query: 110 VLQTVPSDTFPDYPSLMKLTLSGNPIKQIKTGAFQPLSYLVTLELSKCGIEVIEDAAFVG 169
+ V L + + +P ED +
Sbjct: 194 NITFVSK-AVMRLTKLRQFYMGNSPF----VA-ENICEAWENENSEYAQQYKTEDLKWDN 247
Query: 170 LDSLEWLKL-DNNKITTISGS--NILPTGLHGIDLHHN 204
L L +++ + +T + + + I++ N
Sbjct: 248 LKDLTDVEVYNCPNLTKLPTFLKAL--PEMQLINVACN 283
Score = 51.6 bits (124), Expect = 7e-07
Identities = 17/147 (11%), Positives = 36/147 (24%), Gaps = 31/147 (21%)
Query: 76 NLQKIYLSRCRISVIDSKAFRGLTNLVDLDFSHNVLQTVPSDTFP--------------- 120
+ + L S A LT L L + + P
Sbjct: 82 RVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKM 141
Query: 121 ---------------DYPSLMKLTLSGNPIKQIKTGAFQPLSYLVTLELSKCGIEVIEDA 165
D+ L+K ++ +P ++ + + + I +
Sbjct: 142 RMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITFVS-K 200
Query: 166 AFVGLDSLEWLKLDNNKITTISGSNIL 192
A + L L + N+ +
Sbjct: 201 AVMRLTKLRQFYMGNSPFVAENICEAW 227
Score = 38.9 bits (91), Expect = 0.006
Identities = 13/117 (11%), Positives = 26/117 (22%), Gaps = 7/117 (5%)
Query: 98 LTNLVDLDFSHNVLQTVPSDTFPDYPSLMKLTLSGNPIKQIKTGAFQP-LSYLVTLELSK 156
+ L D L L L + K + +S ++ E +
Sbjct: 80 NGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQ 139
Query: 157 CGIEVIEDAAFVGLDSLEWLKLDNNKITTISGSNILPTGLHG------IDLHHNPWT 207
+ ++ L + I + + I N T
Sbjct: 140 KMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNIT 196
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell
invasion; 2.05A {Listeria monocytogenes}
Length = 263
Score = 84.3 bits (209), Expect = 3e-18
Identities = 38/172 (22%), Positives = 68/172 (39%), Gaps = 16/172 (9%)
Query: 36 VNKSLITVVEGMD--PNTQVLDYTGNNLKTLHNEKFQKMGLVNLQKIYLSRCRISVIDSK 93
+ K +T + Q + +N+++L + NL++++LS +IS +
Sbjct: 26 LGKQSVTDLVSQKELSGVQNFNGDNSNIQSLAGMQ----FFTNLKELHLSHNQISDL--S 79
Query: 94 AFRGLTNLVDLDFSHNVLQTVPSDTFPDYPSLMKLTLSGNPIKQIKTGAFQPLSYLVTLE 153
+ LT L +L + N L+ + L +L L N ++ + L L L
Sbjct: 80 PLKDLTKLEELSVNRNRLKNLNGIPSA---CLSRLFLDNNELRDTD--SLIHLKNLEILS 134
Query: 154 LSKCGIEVIEDAAFVGLDSLEWLKLDNNKITTISGSNILPTGLHGIDLHHNP 205
+ ++ I L LE L L N+IT G L ++ IDL
Sbjct: 135 IRNNKLKSIV--MLGFLSKLEVLDLHGNEITNTGGLTRLKK-VNWIDLTGQK 183
Score = 75.1 bits (185), Expect = 4e-15
Identities = 26/132 (19%), Positives = 58/132 (43%), Gaps = 10/132 (7%)
Query: 73 GLVNLQKIYLSRCRISVIDSKAFRGLTNLVDLDFSHNVLQTVPSDTFPDYPSLMKLTLSG 132
GL N K L + ++ + S + L+ + + + ++ +Q++ + +L +L LS
Sbjct: 17 GLANAVKQNLGKQSVTDLVS--QKELSGVQNFNGDNSNIQSLAG--MQFFTNLKELHLSH 72
Query: 133 NPIKQIKTGAFQPLSYLVTLELSKCGIEVIEDAAFVGLDSLEWLKLDNNKITTISGSNIL 192
N I + + L+ L L +++ ++ + + L L LDNN++ L
Sbjct: 73 NQISDLS--PLKDLTKLEELSVNRNRLKNLN---GIPSACLSRLFLDNNELRDTDSLIHL 127
Query: 193 PTGLHGIDLHHN 204
L + + +N
Sbjct: 128 -KNLEILSIRNN 138
Score = 68.5 bits (168), Expect = 8e-13
Identities = 32/149 (21%), Positives = 53/149 (35%), Gaps = 15/149 (10%)
Query: 41 ITVVEGMD--PNTQVLDYTGNNLKTLHNEKFQKMGLVNLQKIYLSRCRISVIDSKAFRGL 98
I + GM N + L + N + L K L L+++ ++R R+ ++
Sbjct: 53 IQSLAGMQFFTNLKELHLSHNQISDLSPLK----DLTKLEELSVNRNRLKNLNGIP---S 105
Query: 99 TNLVDLDFSHNVLQTVPSDTFPDYPSLMKLTLSGNPIKQIKTGAFQPLSYLVTLELSKCG 158
L L +N L+ S +L L++ N +K I LS L L+L
Sbjct: 106 ACLSRLFLDNNELRDTDS--LIHLKNLEILSIRNNKLKSIV--MLGFLSKLEVLDLHGNE 161
Query: 159 IEVIEDAAFVGLDSLEWLKLDNNKITTIS 187
I L + W+ L K
Sbjct: 162 ITNTGG--LTRLKKVNWIDLTGQKCVNEP 188
Score = 54.6 bits (132), Expect = 3e-08
Identities = 18/91 (19%), Positives = 37/91 (40%), Gaps = 7/91 (7%)
Query: 116 SDTFPD--YPSLMKLTLSGNPIKQIKTGAFQPLSYLVTLELSKCGIEVIEDAAFVGLDSL 173
+ FPD + +K L + + + + LS + I+ + +L
Sbjct: 10 NQVFPDPGLANAVKQNLGKQSVTDLVS--QKELSGVQNFNGDNSNIQSLA--GMQFFTNL 65
Query: 174 EWLKLDNNKITTISGSNILPTGLHGIDLHHN 204
+ L L +N+I+ +S L T L + ++ N
Sbjct: 66 KELHLSHNQISDLSPLKDL-TKLEELSVNRN 95
Score = 42.7 bits (101), Expect = 2e-04
Identities = 21/157 (13%), Positives = 47/157 (29%), Gaps = 21/157 (13%)
Query: 41 ITVVEGMD--PNTQVLDYTGNNLKTLHNEKFQKMGLVNLQKIYLSRCRISVIDSKAFRGL 98
+ + + N ++L N LK++ L L+ + L I+ L
Sbjct: 118 LRDTDSLIHLKNLEILSIRNNKLKSIVMLG----FLSKLEVLDLHGNEITNTGG--LTRL 171
Query: 99 TNLVDLDFSHNVLQTVPSDTFPDYPSLMKLTLSGNPIKQIKTGAFQPLSYLVTLELSKCG 158
+ +D + P P +L ++ N +K P +S G
Sbjct: 172 KKVNWIDLTGQKCVNEPVKYQP------ELYIT-NTVKDPDGRWISPYY------ISNGG 218
Query: 159 IEVIEDAAFVGLDSLEWLKLDNNKITTISGSNILPTG 195
V + + + ++ + + + G
Sbjct: 219 SYVDGCVLWELPVYTDEVSYKFSEYINVGETEAIFDG 255
>2kdg_A Myotilin; immonoglobulin domain, actin-binding, structural protein,
cell membrane, cytoplasm, cytoskeleton, disease
mutation, immunoglobulin domain; NMR {Homo sapiens}
Length = 100
Score = 78.9 bits (195), Expect = 5e-18
Identities = 24/95 (25%), Positives = 45/95 (47%), Gaps = 9/95 (9%)
Query: 264 LEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELL 323
+ I EG+ + KVS +P ++W +G +Q+ + H + +E+G L+
Sbjct: 15 MSIDEGRFCRMDFKVSGLPAPDVSWYLNGRTVQS-----DDLHKMIVSEKGL----HSLI 65
Query: 324 IYNSNIDDNGTFVCVAENQAGSTSSNYTIRIVLKE 358
D G + CVA+N+AG + + ++ KE
Sbjct: 66 FEVVRASDAGAYACVAKNRAGEATFTVQLDVLAKE 100
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR,
immune system; 2.30A {Eptatretus burgeri}
Length = 177
Score = 81.5 bits (202), Expect = 5e-18
Identities = 51/203 (25%), Positives = 71/203 (34%), Gaps = 54/203 (26%)
Query: 18 CPTSCICKWKGGKQTVECVNKSLITVVEGMDPNTQVLDYTGNNLKTLHNEKFQKMGLVNL 77
CP+ C C + C +K L +V G+ + L+ N L++L
Sbjct: 1 CPSRCSC----SGTEIRCNSKGLTSVPTGIPSSATRLELESNKLQSL------------- 43
Query: 78 QKIYLSRCRISVIDSKAFRGLTNLVDLDFSHNVLQTVPSDTFPDYPSLMKLTLSGNPIKQ 137
F LT L L S N +Q++P F L L L N ++
Sbjct: 44 -------------PHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQS 90
Query: 138 IKTGAFQPLSYLVTLELSKCGIEVIEDAAFVGLDSLEWLKLDNNKITTISGSNILPTGLH 197
+ G F L+ L L L ++ + D F L SL+
Sbjct: 91 LPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQK---------------------- 128
Query: 198 GIDLHHNPWTCDCLLIG-LRRWL 219
I LH NPW C C I L RWL
Sbjct: 129 -IWLHTNPWDCSCPRIDYLSRWL 150
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat
protein, structural genomi center for structural
genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Length = 197
Score = 81.9 bits (203), Expect = 6e-18
Identities = 22/155 (14%), Positives = 46/155 (29%), Gaps = 10/155 (6%)
Query: 52 QVLDYTGNNLKTLHNEKFQKMGLVNLQKIYLSRCRISVIDSKAFRGLTNLVDLDFSHNVL 111
+ N+ L + N++ + ++ + GL+NL L +
Sbjct: 47 TYITLANINVTDL--TGIEY--AHNIKDLTINNIHATNY--NPISGLSNLERLRIMGKDV 100
Query: 112 QTVPSDTFPDYPSLMKLTLSGNPIKQIKTGAFQPLSYLVTLELSKC-GIEVIEDAAFVGL 170
+ SL L +S + L + +++LS I I L
Sbjct: 101 TSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM--PLKTL 158
Query: 171 DSLEWLKLDNNKITTISGSNILPTGLHGIDLHHNP 205
L+ L + + + G L+ +
Sbjct: 159 PELKSLNIQFDGVHDYRGIEDF-PKLNQLYAFSQT 192
Score = 80.8 bits (200), Expect = 1e-17
Identities = 29/149 (19%), Positives = 51/149 (34%), Gaps = 11/149 (7%)
Query: 41 ITVVEGMD--PNTQVLDYTGNNLKTLHNEKFQKMGLVNLQKIYLSRCRISVIDSKAFRGL 98
+T + G++ N + L + + GL NL+++ + ++ GL
Sbjct: 56 VTDLTGIEYAHNIKDLTINNIHATNYNPIS----GLSNLERLRIMGKDVTSDKIPNLSGL 111
Query: 99 TNLVDLDFSHNVLQTVPSDTFPDYPSLMKLTLSGNP-IKQIKTGAFQPLSYLVTLELSKC 157
T+L LD SH+ P + + LS N I I + L L +L +
Sbjct: 112 TSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM--PLKTLPELKSLNIQFD 169
Query: 158 GIEVIEDAAFVGLDSLEWLKLDNNKITTI 186
G+ L L + I
Sbjct: 170 GVHDYR--GIEDFPKLNQLYAFSQTIGGK 196
Score = 57.3 bits (139), Expect = 2e-09
Identities = 18/131 (13%), Positives = 41/131 (31%), Gaps = 5/131 (3%)
Query: 76 NLQKIYLSRCRISVIDSKAFRGLTNLVDLDFSHNVLQTVPSDTFPDYPSLMKLTLSGNPI 135
+ S + + +L + ++ + + ++ LT++
Sbjct: 21 TFKAYLNGLLGQSSTANITEAQMNSLTYITLANINVTDLTG--IEYAHNIKDLTINNIHA 78
Query: 136 KQIKTGAFQPLSYLVTLELSKCGIEVIEDAAFVGLDSLEWLKLDNNKITTISGSNILP-T 194
LS L L + + + GL SL L + ++ + I
Sbjct: 79 TNYN--PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLP 136
Query: 195 GLHGIDLHHNP 205
++ IDL +N
Sbjct: 137 KVNSIDLSYNG 147
Score = 44.9 bits (107), Expect = 2e-05
Identities = 18/92 (19%), Positives = 30/92 (32%), Gaps = 7/92 (7%)
Query: 49 PNTQVLDYTGNNLKTLHNEKFQKMGLVNLQKIYLSRC-RISVIDSKAFRGLTNLVDLDFS 107
+ +LD + + K L + I LS I+ I + L L L+
Sbjct: 112 TSLTLLDISHSAHDDSILTKIN--TLPKVNSIDLSYNGAITDI--MPLKTLPELKSLNIQ 167
Query: 108 HNVLQTVPSDTFPDYPSLMKLTLSGNPIKQIK 139
+ + D+P L +L I K
Sbjct: 168 FDGVHDYRG--IEDFPKLNQLYAFSQTIGGKK 197
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto;
diacyl lipopeptide, innate immunity, Leu repeat, cell
membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG;
2.90A {Mus musculus}
Length = 562
Score = 86.5 bits (214), Expect = 8e-18
Identities = 53/279 (18%), Positives = 95/279 (34%), Gaps = 40/279 (14%)
Query: 2 MYWIFLIATIIKIVSACPTSCICKWKGGKQTVECVNKSLITVVEGMDPNTQVLDYTGNNL 61
+ +I + S P S + V+ N++L V + + P T+ L
Sbjct: 11 SFHFVCALALI-VGSMTPFSNE-----LESMVDYSNRNLTHVPKDLPPRTKALS------ 58
Query: 62 KTLHNEKFQKMGLVNLQKIYLSRCRISVIDSKAFRGLTNLVDLDFSHNVLQTVPSDTFPD 121
LS+ IS + L+ L L SHN ++++ F
Sbjct: 59 --------------------LSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLF 98
Query: 122 YPSLMKLTLSGNPIKQIKTGAFQPLSYLVTLELSKCGIEVI-EDAAFVGLDSLEWLKLDN 180
L L +S N +++ + P++ L L+LS +V+ F L L +L L
Sbjct: 99 NQDLEYLDVSHN---RLQNISCCPMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSA 155
Query: 181 NKITTISGSNILPTGLHGIDLHHNPWTCDCLLIGLRRWLESTKTPMAIDPI----CSVPP 236
K + + L I L + + +T + P V
Sbjct: 156 AKFRQLDLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNM 215
Query: 237 RLSSVTIKQLSIDELACEPQITPSTFYLEIQEGKNVSLL 275
++++ QLS +L E TF E+ G + +
Sbjct: 216 SVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNV 254
Score = 71.4 bits (175), Expect = 4e-13
Identities = 36/176 (20%), Positives = 59/176 (33%), Gaps = 34/176 (19%)
Query: 49 PNTQVLDYTGNNLKTLHNEKFQKMGLVNLQKIYLSRCRISVIDSKAFRGLT----NLVDL 104
Q L N LK N+ + ++ ++S A+ +++ L
Sbjct: 377 KRLQTLILQRNGLKNFFKVALM---TKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVL 433
Query: 105 DFSHNVLQTVPSDTFPDYPSLMKLTLSGNPIKQIKTGAFQPLSYLVTLELSKCGIEVIED 164
+ S N+L P P + L L N I I L L L ++ ++ + D
Sbjct: 434 NLSSNMLTGSVFRCLP--PKVKVLDLHNNRIMSIPKD-VTHLQALQELNVASNQLKSVPD 490
Query: 165 AAFVGLDSLEWLKLDNNKITTISGSNILPTGLHGIDLHHNPWTCDCLLI-GLRRWL 219
F L SL+++ L + NPW C C I L W+
Sbjct: 491 GVFDRLTSLQYIWLHD-----------------------NPWDCTCPGIRYLSEWI 523
Score = 64.1 bits (156), Expect = 8e-11
Identities = 21/180 (11%), Positives = 52/180 (28%), Gaps = 8/180 (4%)
Query: 37 NKSLITVVEGMDPNTQVLDYTGNNLKTLHNEK---FQKMGLVNLQKIYLSRCRISVIDSK 93
+ L+T + + +L+ T +++T FQ ++ + + I+ +
Sbjct: 235 CQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDR 294
Query: 94 AF-----RGLTNLVDLDFSHNVLQTVPSDTFPDYPSLMKLTLSGNPIKQIKTGAFQPLSY 148
L +L+ + V + + + LS + I S
Sbjct: 295 EEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSPSS 354
Query: 149 LVTLELSKCGIEVIEDAAFVGLDSLEWLKLDNNKITTISGSNILPTGLHGIDLHHNPWTC 208
L ++ L L+ L L N + ++ + ++
Sbjct: 355 FTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNS 414
>2dm3_A KIAA0992 protein, palladin; beta-sandwich, myopalladin,
actin-associated scaffold, structural genomics, NPPSFA;
NMR {Homo sapiens}
Length = 110
Score = 76.6 bits (189), Expect = 4e-17
Identities = 29/96 (30%), Positives = 45/96 (46%), Gaps = 9/96 (9%)
Query: 264 LEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELL 323
L +QEGK + CKVS +P ++W DG P++ +H + E G L+
Sbjct: 19 LTVQEGKLCRMDCKVSGLPTPDLSWQLDGKPVRP-----DSAHKMLVRENGV----HSLI 69
Query: 324 IYNSNIDDNGTFVCVAENQAGSTSSNYTIRIVLKEE 359
I D G + C+A N+AG S + + + KE
Sbjct: 70 IEPVTSRDAGIYTCIATNRAGQNSFSLELVVAAKES 105
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein
binding, plasma; 1.70A {Listeria monocytogenes} PDB:
3rfj_A
Length = 272
Score = 81.2 bits (201), Expect = 5e-17
Identities = 51/233 (21%), Positives = 86/233 (36%), Gaps = 46/233 (19%)
Query: 31 QTVECVNKSLITVVEGMDPNTQVLDYTGNNLKTL--------------HNEKFQKMG--- 73
+T+ + T + ++ +N + +
Sbjct: 1 ETITVSTPIKQIFPDDAFAETIKANLKKKSVTDAVTQNELNSIDQIIANNSDIKSVQGIQ 60
Query: 74 -LVNLQKIYLSRCRISVIDSKAFRGLTNLVDLDFSHNVLQTVPSDTFPDYPSLMKLTLSG 132
L N++ + L ++ I A + LTNL L + N LQ++P+ F +L +L L
Sbjct: 61 YLPNVRYLALGGNKLHDI--SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVE 118
Query: 133 NPIKQIKTGAFQPLSYLVTLELSKCGIEVIEDAAFVGLDSLEWLKLDNNKITTI-SG--- 188
N ++ + G F L+ L L L+ ++ + F L +L L L N++ ++ G
Sbjct: 119 NQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFD 178
Query: 189 -----------SNIL---PTG-------LHGIDLHHNPWTCDCLLIG-LRRWL 219
N L P G L I LH NPW C C I L W+
Sbjct: 179 KLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCPGIRYLSEWI 231
>1u2h_A APEG-1, aortic preferentially expressed protein 1; structural
genomics, IG-fold I-SET, RGD motif, homophilic adhesion,
arterial smooth muscle cells; 0.96A {Homo sapiens}
Length = 99
Score = 75.0 bits (185), Expect = 1e-16
Identities = 18/91 (19%), Positives = 37/91 (40%), Gaps = 9/91 (9%)
Query: 264 LEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELL 323
++EG++V + +V P+ ++WL + P++ + E G L
Sbjct: 15 QSVREGQDVIMSIRVQGEPKPVVSWLRNRQPVRP-----DQRRFAEEAEGGL----CRLR 65
Query: 324 IYNSNIDDNGTFVCVAENQAGSTSSNYTIRI 354
I + D G + C A N+ G+ + +
Sbjct: 66 ILAAERGDAGFYTCKAVNEYGARQCEARLEV 96
>1g1c_A Immunoglobulin-like domain I1 from titin; immunoglobulin domain,
beta-sandwhich, I-SET, structural protein; 2.10A {Homo
sapiens} SCOP: b.1.1.4
Length = 99
Score = 74.6 bits (184), Expect = 2e-16
Identities = 21/85 (24%), Positives = 37/85 (43%), Gaps = 9/85 (10%)
Query: 264 LEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELL 323
+ +G + +V P+ + W +GV I+ S+ Y E+ EL+
Sbjct: 15 QTVGQGSDAHFRVRVVGKPDPECEWYKNGVKIER-----SDRIYWYWPEDNV----CELV 65
Query: 324 IYNSNIDDNGTFVCVAENQAGSTSS 348
I + +D+ + + A N AG TSS
Sbjct: 66 IRDVTGEDSASIMVKAINIAGETSS 90
>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30,
N-terminal eight IG domains...; immunoglobulin domain;
HET: NAG NDG; 4.19A {Drosophila melanogaster}
Length = 816
Score = 82.7 bits (204), Expect = 2e-16
Identities = 29/134 (21%), Positives = 53/134 (39%), Gaps = 13/134 (9%)
Query: 245 QLSIDELACEPQITPSTFYLEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASE 304
+L + P I + ++ G +V L C P +I+W DG I N ++
Sbjct: 420 ELKLGGRFDPPVIRQAFQEETMEPGPSVFLKCVAGGNPTPEISWELDGKKIAN-----ND 474
Query: 305 SHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCVAENQAGSTSSNYTIRIVLKEENVEVV 364
+ V S L I + + +D G + C+A+++ G + + NV +
Sbjct: 475 RYQVGQYVTVNGDVVSYLNITSVHANDGGLYKCIAKSKVGVAEHSAKL-------NVYGL 527
Query: 365 TVF-PLEYVLIVSG 377
+E IV+G
Sbjct: 528 PYIRQMEKKAIVAG 541
Score = 69.2 bits (169), Expect = 3e-12
Identities = 29/118 (24%), Positives = 40/118 (33%), Gaps = 17/118 (14%)
Query: 255 PQITPSTF-YLEIQEGKNVSLLCKVSAIPE-AKITWLFDGVPIQNESMSASESHAVYSTE 312
P+I P F Q G+ ++L C V I W DG I SE + ++
Sbjct: 619 PRIIPFAFEEGPAQVGQYLTLHCSVPGGDLPLNIDWTLDGQAI-------SEDLGITTSR 671
Query: 313 EGTEIKKSELLIYNSNIDDNGTFVCVAENQAGSTSSNYTI------RIVLKEENVEVV 364
G S L I G F C A N AG + R +L+ +
Sbjct: 672 VGRRG--SVLTIEAVEASHAGNFTCHARNLAGHQQFTTPLNVYVPPRWILEPTDKAFA 727
Score = 68.4 bits (167), Expect = 5e-12
Identities = 23/101 (22%), Positives = 36/101 (35%), Gaps = 7/101 (6%)
Query: 255 PQITPSTFYLEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEG 314
P+ +G + + CK P+ ++TW E +S EEG
Sbjct: 715 PRWILEPTDKAFAQGSDAKVECKADGFPKPQVTWKKAVGDTPGEYKDLKKSD-NIRVEEG 773
Query: 315 TEIKKSELLIYNSNIDDNGTFVCVAENQAGSTSSNYTIRIV 355
T L + N + G ++C A N GS S + V
Sbjct: 774 T------LHVDNIQKTNEGYYLCEAINGIGSGLSAVIMISV 808
Score = 67.7 bits (165), Expect = 1e-11
Identities = 15/100 (15%), Positives = 31/100 (31%), Gaps = 20/100 (20%)
Query: 255 PQITPSTFYLEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEG 314
+ G+ C+ + P ++W+ DG I +
Sbjct: 344 LSAKIDPPTQTVDFGRPAVFTCQYTGNPIKTVSWMKDGKAIGHSE--------------- 388
Query: 315 TEIKKSELLIYNSNIDDNGTFVCVAENQAGSTSSNYTIRI 354
S L I + +D G + C N S ++ +++
Sbjct: 389 -----SVLRIESVKKEDKGMYQCFVRNDRESAEASAELKL 423
Score = 65.7 bits (160), Expect = 4e-11
Identities = 16/131 (12%), Positives = 33/131 (25%), Gaps = 14/131 (10%)
Query: 239 SSVTIKQLSIDELACEPQITPSTFYLEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNE 298
+ I + ++LLC P W +
Sbjct: 233 KGRLVITEPISSAVPKVVSLAKFDMKTYSGSSTMALLCPAQGYPVPVFRWYKFIEGTTRK 292
Query: 299 SMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCVAENQAGSTSSNYTI------ 352
+ + L+I ++ ++D+G ++CV N G S +
Sbjct: 293 Q--------AVVLNDRVKQVSGTLIIKDAVVEDSGKYLCVVNNSVGGESVETVLTVTAPL 344
Query: 353 RIVLKEENVEV 363
+ V
Sbjct: 345 SAKIDPPTQTV 355
Score = 63.0 bits (153), Expect = 2e-10
Identities = 23/95 (24%), Positives = 35/95 (36%), Gaps = 15/95 (15%)
Query: 255 PQITPSTFYLEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEG 314
P I I G+ + + C V+ P I W D + + G
Sbjct: 528 PYIRQ-MEKKAIVAGETLIVTCPVAGYPIDSIVWERDNRALP-------INRKQKVFPNG 579
Query: 315 TEIKKSELLIYNSNID-DNGTFVCVAENQAGSTSS 348
T L+I N + D T+ CVA+NQ G ++
Sbjct: 580 T------LIIENVERNSDQATYTCVAKNQEGYSAR 608
Score = 54.9 bits (132), Expect = 8e-08
Identities = 16/133 (12%), Positives = 36/133 (27%), Gaps = 18/133 (13%)
Query: 255 PQITPSTFYLEIQEGKNVSLLCKVSAI---PEAKITWLFDGVPIQNESMSASESHAVYST 311
+ G + + C + + ++W D + V +
Sbjct: 139 QYYEADVNKEHVIRGNSAVIKCLIPSFVADFVEVVSWHTDEEENYFPGAEYDGKYLVLPS 198
Query: 312 EEGTEIKKSELLIYN-SNIDDNGTFVCVAENQAGSTS--SNYTIRIVLKEENVE----VV 364
EL I D ++ C +++ + S R+V+ E VV
Sbjct: 199 --------GELHIREVGPEDGYKSYQCRTKHRLTGETRLSATKGRLVITEPISSAVPKVV 250
Query: 365 TVFPLEYVLIVSG 377
++ +
Sbjct: 251 SLAKFDMKTYSGS 263
Score = 54.6 bits (131), Expect = 1e-07
Identities = 19/115 (16%), Positives = 33/115 (28%), Gaps = 26/115 (22%)
Query: 264 LEIQEGKNVSLLCKVSAIPEAKITWLF-DGVPIQNESMSASESHAVYSTEEGTEIKKSEL 322
++ + CK S P +I W+ DG + + + +G L
Sbjct: 49 IDFSNSTGAEIECKASGNPMPEIIWIRSDGTAVGD------VPGLRQISSDGK------L 96
Query: 323 LIYNSNIDD------NGTFVCVAENQAGSTSSN-------YTIRIVLKEENVEVV 364
+ +D + C+A NQ GS S V+
Sbjct: 97 VFPPFRAEDYRQEVHAQVYACLARNQFGSIISRDVHVRAVVAQYYEADVNKEHVI 151
Score = 33.0 bits (75), Expect = 0.43
Identities = 6/37 (16%), Positives = 12/37 (32%)
Query: 322 LLIYNSNIDDNGTFVCVAENQAGSTSSNYTIRIVLKE 358
+ + N + F VA GS + ++
Sbjct: 1 MNMPNERLKWLMLFAAVALIACGSQTLAANPPDADQK 37
>2r15_A Myomesin-1; sarcomeric protein, IG-like domains, homodimer,
immunoglobul domain, muscle protein, thick filament,
contractIle protein; 2.24A {Homo sapiens}
Length = 212
Score = 77.6 bits (191), Expect = 2e-16
Identities = 26/124 (20%), Positives = 52/124 (41%), Gaps = 9/124 (7%)
Query: 235 PPRLSSVTIKQLSIDELACEPQITPSTFYLEIQEGKNVSLLCKVSAIPEAKITWLFDGVP 294
+KQ +I E + + IQEGK ++L C V P +++WL +
Sbjct: 98 EAYAEFQRLKQAAIAEKNRARVLGGLPDVVTIQEGKALNLTCNVWGDPPPEVSWLKNEKA 157
Query: 295 IQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCVAENQAGSTSSNYTIRI 354
+ ++ + T + I + D+G + V +N+ GS +S++T+ +
Sbjct: 158 LAQ-----TDHCNLKFEAGRT----AYFTINGVSTADSGKYGLVVKNKYGSETSDFTVSV 208
Query: 355 VLKE 358
+ E
Sbjct: 209 FIPE 212
Score = 58.0 bits (140), Expect = 1e-09
Identities = 15/106 (14%), Positives = 30/106 (28%), Gaps = 11/106 (10%)
Query: 268 EGKNVSLLCKVSA-IPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYN 326
+ + L V+ + + K+ W +G I+ S+ T E L I
Sbjct: 16 TAEGIQLYSFVTYYVEDLKVNWSHNGSAIRY-----SDRVKTGVTGEQ-----IWLQINE 65
Query: 327 SNIDDNGTFVCVAENQAGSTSSNYTIRIVLKEENVEVVTVFPLEYV 372
+D G +V + + +E +
Sbjct: 66 PTPNDKGKYVMELFDGKTGHQKTVDLSGQAYDEAYAEFQRLKQAAI 111
>2j8h_A Titin, connectin; cardiomyopathy, nuclear protein,
serine/threonine-protein KI LIMB-girdle muscular
dystrophy, phosphorylation; 1.99A {Homo sapiens} PDB:
2j8o_A 2ill_A
Length = 197
Score = 77.1 bits (190), Expect = 2e-16
Identities = 23/110 (20%), Positives = 43/110 (39%), Gaps = 12/110 (10%)
Query: 252 ACEPQIT--PSTFYLEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVY 309
A P L ++ N +L+CKV+ P+ + W G I + + +
Sbjct: 2 AMAPHFKEELRN--LNVRYQSNATLVCKVTGHPKPIVKWYRQGKEII----ADGLKYRIQ 55
Query: 310 STEEGTEIKKSELLIYNSNIDDNGTFVCVAENQAGSTSSNYTIRIVLKEE 359
+ G +L+I + DD + A NQ GS S ++ + + +
Sbjct: 56 EFKGGY----HQLIIASVTDDDATVYQVRATNQGGSVSGTASLEVEVPAK 101
Score = 72.1 bits (177), Expect = 1e-14
Identities = 21/105 (20%), Positives = 34/105 (32%), Gaps = 14/105 (13%)
Query: 255 PQITPSTFY-----LEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVY 309
+I + G+ VS+ S P+ ITW I N + + V
Sbjct: 100 AKIHLPKTLEGMGAVHALRGEVVSIKIPFSGKPDPVITWQKGQDLIDN-----NGHYQVI 154
Query: 310 STEEGTEIKKSELLIYNSNIDDNGTFVCVAENQAGSTSSNYTIRI 354
T T S + D G +V A+N+ G + +
Sbjct: 155 VTRSFT----SLVFPNGVERKDAGFYVVCAKNRFGIDQKTVELDV 195
>3irg_A Titin; IG-like, titin, OBSL1, complex, alternative splicing,
ATP-binding, calcium, calmodulin-binding,
cardiomyopathy; 1.30A {Homo sapiens} PDB: 3knb_A 3q5o_A
2wp3_T* 2wwk_T 2wwm_D 2y9r_T*
Length = 100
Score = 73.5 bits (181), Expect = 4e-16
Identities = 25/102 (24%), Positives = 41/102 (40%), Gaps = 12/102 (11%)
Query: 255 PQIT--PSTFYLEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTE 312
P+I PS + I EGK +++ C + P ++TW G I + E +
Sbjct: 6 PKIEALPSD--ISIDEGKVLTVACAFTGEPTPEVTWSCGGRKIHS-----QEQGRFHIEN 58
Query: 313 EGTEIKKSELLIYNSNIDDNGTFVCVAENQAGSTSSNYTIRI 354
+ L+I + D G + N+ GS S+ I I
Sbjct: 59 TD---DLTTLIIMDVQKQDGGLYTLSLGNEFGSDSATVNIHI 97
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich
repeat, LRR, system; 2.10A {Petromyzon marinus}
Length = 174
Score = 75.8 bits (187), Expect = 4e-16
Identities = 37/118 (31%), Positives = 56/118 (47%), Gaps = 6/118 (5%)
Query: 17 ACPTSCICKWKGGKQTVECVNKSLITVVEGMDPNTQVLDYTGNNLKTLHNEKFQKMGLVN 76
CP+ C C + V C N L +V G+ + Q L N + L F LVN
Sbjct: 5 GCPSQCSC----DQTLVNCQNIRLASVPAGIPTDKQRLWLNNNQITKLEPGVFDH--LVN 58
Query: 77 LQKIYLSRCRISVIDSKAFRGLTNLVDLDFSHNVLQTVPSDTFPDYPSLMKLTLSGNP 134
LQ++Y + +++ I + F LT L LD + N L+++P F + SL + L NP
Sbjct: 59 LQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYLYNNP 116
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor,
GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB:
3rez_A*
Length = 130
Score = 74.1 bits (182), Expect = 5e-16
Identities = 30/98 (30%), Positives = 35/98 (35%), Gaps = 14/98 (14%)
Query: 172 SLEWLKLDNNKITTISGSNILPTG-------LHGIDLHHNPWTCDCLLIGLRRWLESTKT 224
L L N +T LP G L L NPW CDC L+ LR WL
Sbjct: 32 DTTELVLTGNNLTA------LPPGLLDALPALRTAHLGANPWRCDCRLVPLRAWLAGRPE 85
Query: 225 PMAI-DPICSVPPRLSSVTIKQLSIDELACEPQITPST 261
D C PP L + L+ DEL P +
Sbjct: 86 RAPYRDLRCVAPPALRGRLLPYLAEDELRAACAPGPLS 123
Score = 45.2 bits (107), Expect = 6e-06
Identities = 23/135 (17%), Positives = 38/135 (28%), Gaps = 30/135 (22%)
Query: 18 CPTSCICKWKGGKQTVECVNKSL--ITVVEGMDPNTQVLDYTGNNLKTLHNEKFQKMGLV 75
CP C C V+C + L ++ +T L TGNNL L L
Sbjct: 2 CPAPCSCA----GTLVDCGRRGLTWASLPTAFPVDTTELVLTGNNLTALPPGLLDA--LP 55
Query: 76 NLQKIYLSR------CRISVIDSKAFRGLTNLVDLDFSHNVLQTVPSDTFPDYPSLMKLT 129
L+ +L CR+ + + + D +
Sbjct: 56 ALRTAHLGANPWRCDCRL----------------VPLRAWLAGRPERAPYRDLRCVAPPA 99
Query: 130 LSGNPIKQIKTGAFQ 144
L G + + +
Sbjct: 100 LRGRLLPYLAEDELR 114
>2kkq_A Myotilin; unknown function, actin-binding, cell membrane,
cytoplasm, cytoskeleton, disease mutation,
immunoglobulin domain; NMR {Homo sapiens}
Length = 116
Score = 73.2 bits (180), Expect = 8e-16
Identities = 26/91 (28%), Positives = 44/91 (48%), Gaps = 8/91 (8%)
Query: 264 LEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELL 323
++ EG +V L C++SAIP K+ W + +Q ++ ++Y G LL
Sbjct: 25 KKVLEGDSVKLECQISAIPPPKLFWKRNNEMVQFN----TDRISLYQDNTGR----VTLL 76
Query: 324 IYNSNIDDNGTFVCVAENQAGSTSSNYTIRI 354
I + N D G + A N+AG T+ N + +
Sbjct: 77 IKDVNKKDAGWYTVSAVNEAGVTTCNTRLDV 107
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY,
crystallography, immune system; 1.55A {Petromyzon
marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Length = 170
Score = 75.0 bits (185), Expect = 8e-16
Identities = 38/118 (32%), Positives = 57/118 (48%), Gaps = 6/118 (5%)
Query: 17 ACPTSCICKWKGGKQTVECVNKSLITVVEGMDPNTQVLDYTGNNLKTLHNEKFQKMGLVN 76
ACP+ C C TV+C KSL +V G+ TQVL N + L F + L
Sbjct: 2 ACPSQCSC----SGTTVDCSGKSLASVPTGIPTTTQVLYLYDNQITKLEPGVFDR--LTQ 55
Query: 77 LQKIYLSRCRISVIDSKAFRGLTNLVDLDFSHNVLQTVPSDTFPDYPSLMKLTLSGNP 134
L ++ L +++V+ + F LT L L + N L+++P F + SL + L NP
Sbjct: 56 LTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLLNNP 113
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder,
asparagine ladder, virulence factor, solenoid, cell
WALL; 2.70A {Listeria monocytogenes}
Length = 457
Score = 79.7 bits (197), Expect = 9e-16
Identities = 32/156 (20%), Positives = 50/156 (32%), Gaps = 18/156 (11%)
Query: 49 PNTQVLDYTGNNLKTLHNEKFQKMGLVNLQKIYLSRCRISVIDSKAFRGLTNLVDLDFSH 108
L T NN+ TL + NL + +++ +D LT L L+
Sbjct: 64 TGLTKLICTSNNITTLDLSQ-----NTNLTYLACDSNKLTNLD---VTPLTKLTYLNCDT 115
Query: 109 NVLQTVPSDTFPDYPSLMKLTLSGNPIKQIKTGAFQPLSYLVTLELSKCGIEVIEDAAFV 168
N L + P L L + N + +I + L L+ I
Sbjct: 116 NKLTKLD---VSQNPLLTYLNCARNTLTEID---VSHNTQLTELDCHLNKK--ITKLDVT 167
Query: 169 GLDSLEWLKLDNNKITTISGSNILPTGLHGIDLHHN 204
L L NKIT + S L+ ++ N
Sbjct: 168 PQTQLTTLDCSFNKITELDVSQ--NKLLNRLNCDTN 201
Score = 78.2 bits (193), Expect = 2e-15
Identities = 32/178 (17%), Positives = 54/178 (30%), Gaps = 35/178 (19%)
Query: 49 PNTQVLDYTGNNLKTLHNEKFQKMGLVNLQKIYLSRCRISVIDSKAFRGLTNLVDLDFSH 108
L+ NN+ L + L + S +++ ID LT L D S
Sbjct: 191 KLLNRLNCDTNNITKLDLN-----QNIQLTFLDCSSNKLTEID---VTPLTQLTYFDCSV 242
Query: 109 NVLQTVPSDTFPDYPSLMKLTLSGNPIK-------------------QIKTGAFQPLSYL 149
N L + T L L + +IK + L
Sbjct: 243 NPLTELDVSTLS---KLTTLHCIQTDLLEIDLTHNTQLIYFQAEGCRKIKELDVTHNTQL 299
Query: 150 VTLELSKCGIEVIEDAAFVGLDSLEWLKLDNNKITTISGSNILPTGLHGIDLHHNPWT 207
L+ GI ++ L +L L+N ++T + S+ T L + +
Sbjct: 300 YLLDCQAAGITELD---LSQNPKLVYLYLNNTELTELDVSHN--TKLKSLSCVNAHIQ 352
Score = 75.5 bits (186), Expect = 2e-14
Identities = 33/157 (21%), Positives = 49/157 (31%), Gaps = 18/157 (11%)
Query: 49 PNTQVLDYTGNNLKTLHNEKFQKMGLVNLQKIYLSRCRISVIDSKAFRGLTNLVDLDFSH 108
L+ N L L + L + +R ++ ID T L +LD
Sbjct: 106 TKLTYLNCDTNKLTKLDVSQ-----NPLLTYLNCARNTLTEID---VSHNTQLTELDCHL 157
Query: 109 NVLQTVPSDTFPDYPSLMKLTLSGNPIKQIKTGAFQPLSYLVTLELSKCGIEVIEDAAFV 168
N T L L S N I ++ L L I ++
Sbjct: 158 NKKITKL--DVTPQTQLTTLDCSFNKITELD---VSQNKLLNRLNCDTNNITKLD---LN 209
Query: 169 GLDSLEWLKLDNNKITTISGSNILPTGLHGIDLHHNP 205
L +L +NK+T I + + T L D NP
Sbjct: 210 QNIQLTFLDCSSNKLTEIDVTPL--TQLTYFDCSVNP 244
Score = 73.2 bits (180), Expect = 1e-13
Identities = 29/157 (18%), Positives = 50/157 (31%), Gaps = 15/157 (9%)
Query: 48 DPNTQVLDYTGNNLKTLHNEKFQKMGLVNLQKIYLSRCRISVIDSKAFRGLTNLVDLDFS 107
D N ++ ++ L L + I+ + LT L L +
Sbjct: 17 DDNFASEVAAAFEMQATDTISEEQ--LATLTSLDCHNSSITDMT--GIEKLTGLTKLICT 72
Query: 108 HNVLQTVPSDTFPDYPSLMKLTLSGNPIKQIKTGAFQPLSYLVTLELSKCGIEVIEDAAF 167
N + T+ +L L N + + PL+ L L + ++
Sbjct: 73 SNNITTLD---LSQNTNLTYLACDSNKLTNL---DVTPLTKLTYLNCDTNKLTKLD---V 123
Query: 168 VGLDSLEWLKLDNNKITTISGSNILPTGLHGIDLHHN 204
L +L N +T I S+ T L +D H N
Sbjct: 124 SQNPLLTYLNCARNTLTEIDVSHN--TQLTELDCHLN 158
Score = 68.2 bits (167), Expect = 4e-12
Identities = 24/132 (18%), Positives = 43/132 (32%), Gaps = 10/132 (7%)
Query: 76 NLQKIYLSRCRISVIDSKAFRGLTNLVDLDFSHNVLQTVPSDTFPDYPSLMKLTLSGNPI 135
N + + D+ + L L LD ++ + + L KL + N I
Sbjct: 19 NFASEVAAAFEMQATDTISEEQLATLTSLDCHNSSITDMTG--IEKLTGLTKLICTSNNI 76
Query: 136 KQIKTGAFQPLSYLVTLELSKCGIEVIEDAAFVGLDSLEWLKLDNNKITTISGSNILPTG 195
+ + L L + ++ L L +L D NK+T + S
Sbjct: 77 TTLD---LSQNTNLTYLACDSNKLTNLD---VTPLTKLTYLNCDTNKLTKLDVSQ--NPL 128
Query: 196 LHGIDLHHNPWT 207
L ++ N T
Sbjct: 129 LTYLNCARNTLT 140
Score = 67.0 bits (164), Expect = 8e-12
Identities = 31/229 (13%), Positives = 56/229 (24%), Gaps = 23/229 (10%)
Query: 49 PNTQVLDYTGNNLKTLHNEKFQKMGLVNLQKIYLSRCRISVIDSKAFRGLTNLVDLDFSH 108
D + N L L L ++ + + ID T L+
Sbjct: 233 TQLTYFDCSVNPLTELDVSTLS-----KLTTLHCIQTDLLEID---LTHNTQLIYFQAEG 284
Query: 109 NVLQTVPSDTFPDYPSLMKLTLSGNPIKQIKTGAFQPLSYLVTLELSKCGIEVIEDAAFV 168
+ + L L I ++ LV L L+ + ++
Sbjct: 285 C--RKIKELDVTHNTQLYLLDCQAAGITEL---DLSQNPKLVYLYLNNTELTELD---VS 336
Query: 169 GLDSLEWLKLDNNKITTISGSNILPTGLHGIDLHHNPWTCDCLLIGLRRWLESTKTPMAI 228
L+ L N I S +P L+ L +P +
Sbjct: 337 HNTKLKSLSCVNAHIQDFSSVGKIPA-LNNNFEAEGQTITMPKETLTNNSLTIAVSPDLL 395
Query: 229 D------PICSVPPRLSSVTIKQLSIDELACEPQITPSTFYLEIQEGKN 271
D I + ++ + L+ + TF E
Sbjct: 396 DQFGNPMNIEPGDGGVYDQATNTITWENLSTDNPAVTYTFTSENGAIVG 444
Score = 35.8 bits (83), Expect = 0.052
Identities = 13/60 (21%), Positives = 24/60 (40%), Gaps = 1/60 (1%)
Query: 145 PLSYLVTLELSKCGIEVIEDAAFVGLDSLEWLKLDNNKITTISGSNILPTGLHGIDLHHN 204
P + + ++ + + L +L L N+ IT ++G L TGL + N
Sbjct: 16 PDDNFASEVAAAFEMQATDTISEEQLATLTSLDCHNSSITDMTGIEKL-TGLTKLICTSN 74
>1wwb_X Protein (brain derived neurotrophic factor receptor TRKB); TRK
receptor, receptor tyrosine kinase, 3D-domain swapping,
transferase; 2.10A {Homo sapiens} SCOP: b.1.1.4 PDB:
1hcf_X
Length = 103
Score = 72.1 bits (177), Expect = 1e-15
Identities = 18/101 (17%), Positives = 35/101 (34%), Gaps = 8/101 (7%)
Query: 255 PQITPSTFYLEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEG 314
P IT F + + V P+ + W ++G + ++ H TE
Sbjct: 5 PTIT---FLESPTSDHHWCIPFTVKGNPKPALQWFYNGAILNESKYICTKIHVTNHTEY- 60
Query: 315 TEIKKSELLIYNSNIDDNGTFVCVAENQAGSTSSNYTIRIV 355
L + N +NG + +A+N+ G + +
Sbjct: 61 ----HGCLQLDNPTHMNNGDYTLIAKNEYGKDEKQISAHFM 97
>2yd1_A Tyrosine-protein phosphatase LAR; hydrolase; 1.80A {Drosophila
melanogaster} PDB: 3pxj_A
Length = 212
Score = 75.2 bits (185), Expect = 2e-15
Identities = 31/108 (28%), Positives = 42/108 (38%), Gaps = 13/108 (12%)
Query: 249 DELACEPQITPSTFYLEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAV 308
A P IT I+ G V + CK P I W+ + + S+
Sbjct: 105 KTPAGFPVITQGPGTRVIEVGHTVLMTCKAIGNPTPNIYWIKNQTKVD-------MSNPR 157
Query: 309 YSTEEGTEIKKSELLIYNSNIDDNGTFVCVAENQAGSTSSNYTIRIVL 356
YS ++G L I NS +D G + CVAEN G+ S T V
Sbjct: 158 YSLKDGF------LQIENSREEDQGKYECVAENSMGTEHSKATNLYVK 199
Score = 61.3 bits (149), Expect = 7e-11
Identities = 25/116 (21%), Positives = 38/116 (32%), Gaps = 10/116 (8%)
Query: 254 EPQITPSTFYLEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEE 313
P+I ++ G S C P I W +G + + V
Sbjct: 6 PPEIIRKPQNQGVRVGGVASFYCAARGDPPPSIVWRKNGKKVS----GTQSRYTVLEQPG 61
Query: 314 GTEIKKSELLIYNSNI-DDNGTFVCVAENQAGST-SSNYTIRIVLKEENVEVVTVF 367
G I L I D+ + CVAEN G S++ T+ I ++ V
Sbjct: 62 GISI----LRIEPVRAGRDDAPYECVAENGVGDAVSADATLTIYEGDKTPAGFPVI 113
>3qp3_A Titin; I-SET IG-like, sarcomere, M-BAND, transferase; 2.00A {Homo
sapiens}
Length = 103
Score = 71.6 bits (176), Expect = 2e-15
Identities = 22/85 (25%), Positives = 35/85 (41%), Gaps = 10/85 (11%)
Query: 264 LEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELL 323
+ G+N + V + P A++ W +GV +Q S Y+ G L
Sbjct: 18 HRVPCGQNTRFILNVQSKPTAEVKWYHNGVELQE------SSKIHYTNTSGV----LTLE 67
Query: 324 IYNSNIDDNGTFVCVAENQAGSTSS 348
I + + DD+GT+ V N G S
Sbjct: 68 ILDCHTDDSGTYRAVCTNYKGEASD 92
>2dm2_A Palladin; beta-sandwich, KIAA0992, actin-associated scaffold,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 110
Score = 71.6 bits (176), Expect = 2e-15
Identities = 25/86 (29%), Positives = 39/86 (45%), Gaps = 8/86 (9%)
Query: 264 LEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELL 323
+I EG V+ C+V+ P+ KI W DG I + S+ + + +GT L
Sbjct: 18 YKIFEGMPVTFTCRVAGNPKPKIYWFKDGKQISPK----SDHYTIQRDLDGT----CSLH 69
Query: 324 IYNSNIDDNGTFVCVAENQAGSTSSN 349
S +DD+G + +A N G S
Sbjct: 70 TTASTLDDDGNYTIMAANPQGRISCT 95
>2edj_A Roundabout homolog 2; KIAA1568 protein, beta sandwich, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 100
Score = 71.3 bits (175), Expect = 2e-15
Identities = 26/100 (26%), Positives = 37/100 (37%), Gaps = 12/100 (12%)
Query: 255 PQITPSTFYLEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEG 314
P I + L CK + P I+WL +G E+G
Sbjct: 9 PIILQGPANQTLAVDGTALLKCKATGDPLPVISWLKEGFTFP------GRDPRATIQEQG 62
Query: 315 TEIKKSELLIYNSNIDDNGTFVCVAENQAGSTSSNYTIRI 354
T L I N I D GT+ CVA + +G TS + + +
Sbjct: 63 T------LQIKNLRISDTGTYTCVATSSSGETSWSAVLDV 96
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis,
effector protein, virulence factor, toxin; 2.10A
{Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Length = 454
Score = 78.1 bits (193), Expect = 3e-15
Identities = 35/172 (20%), Positives = 57/172 (33%), Gaps = 35/172 (20%)
Query: 49 PNTQVLDYTGNNLKTLHNEKFQKMGLVNLQKIYLSRCRISVIDSKAFRGLTNLVDLDFSH 108
P + N+LK L + ++L+ I + + + L L + +
Sbjct: 195 PFLTAIYADNNSLKKLPDL------PLSLESIVAGNNILEELPE--LQNLPFLTTIYADN 246
Query: 109 NVLQTVPSD---------------TFPDYP-SLMKLTLSGNPIKQIKTGAFQPLSYLVTL 152
N+L+T+P P+ P SL L +S N + L L
Sbjct: 247 NLLKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSEL----PPNLYYL 302
Query: 153 ELSKCGIEVIEDAAFVGLDSLEWLKLDNNKITTISGSNILPTGLHGIDLHHN 204
S I + D SLE L + NNK+ + P L + N
Sbjct: 303 NASSNEIRSLCD----LPPSLEELNVSNNKLIELPAL---PPRLERLIASFN 347
Score = 75.4 bits (186), Expect = 2e-14
Identities = 28/170 (16%), Positives = 58/170 (34%), Gaps = 27/170 (15%)
Query: 49 PNTQVLDYTGNNLKTLHNE-----KFQKMGL---------VNLQKIYLSRCRISVIDSKA 94
P+ + L + N+L L L+ + +S ++ +
Sbjct: 91 PHLESLVASCNSLTELPELPQSLKSLLVDNNNLKALSDLPPLLEYLGVSNNQLEKLPE-- 148
Query: 95 FRGLTNLVDLDFSHNVLQTVPSDTFPDYPSLMKLTLSGNPIKQIKTGAFQPLSYLVTLEL 154
+ + L +D +N L+ +P PSL + N ++++ Q L +L +
Sbjct: 149 LQNSSFLKIIDVDNNSLKKLPD----LPPSLEFIAAGNNQLEELPE--LQNLPFLTAIYA 202
Query: 155 SKCGIEVIEDAAFVGLDSLEWLKLDNNKITTISGSNILPTGLHGIDLHHN 204
++ + SLE + NN + + L L I +N
Sbjct: 203 DNNSLKKL----PDLPLSLESIVAGNNILEELPELQNL-PFLTTIYADNN 247
Score = 61.6 bits (150), Expect = 4e-10
Identities = 23/164 (14%), Positives = 57/164 (34%), Gaps = 33/164 (20%)
Query: 60 NLKTLHNEKFQKMGLVNLQKIYLSRCRISVIDS-------------------KAFRGLTN 100
+ + + + ++ L+ +S + + + L +
Sbjct: 56 EQREMAVSRLRDCLDRQAHELELNNLGLSSLPELPPHLESLVASCNSLTELPELPQSLKS 115
Query: 101 LVDLDFSHNVLQTVPSDTFPDYPSLMKLTLSGNPIKQIKTGAFQPLSYLVTLELSKCGIE 160
L+ + + L +P P L L +S N ++++ Q S+L +++ ++
Sbjct: 116 LLVDNNNLKALSDLP-------PLLEYLGVSNNQLEKL--PELQNSSFLKIIDVDNNSLK 166
Query: 161 VIEDAAFVGLDSLEWLKLDNNKITTISGSNILPTGLHGIDLHHN 204
+ D SLE++ NN++ + L I +N
Sbjct: 167 KLPD----LPPSLEFIAAGNNQLEELP-ELQNLPFLTAIYADNN 205
Score = 56.9 bits (138), Expect = 1e-08
Identities = 21/135 (15%), Positives = 48/135 (35%), Gaps = 23/135 (17%)
Query: 52 QVLDYTGNNLKTLHNEKFQKMGLVNLQKIYLSRCRISVIDSKAFRGLTNLVDLDFSHNVL 111
+ L+ + N L L L+++ S ++ + NL L +N L
Sbjct: 320 EELNVSNNKLIELPAL------PPRLERLIASFNHLAEVPE----LPQNLKQLHVEYNPL 369
Query: 112 QTVPSDTFPDYPSLMKLTLSGNPIKQIKTGAFQPLSYLVTLELSKCGIEVIEDAAFVGLD 171
+ FPD P ++ + + ++ L L + + D +
Sbjct: 370 RE-----FPDIPESVEDLRMNSHLAEVPEL----PQNLKQLHVETNPLREFPDI----PE 416
Query: 172 SLEWLKLDNNKITTI 186
S+E L++++ ++
Sbjct: 417 SVEDLRMNSERVVDP 431
Score = 51.5 bits (124), Expect = 6e-07
Identities = 18/150 (12%), Positives = 44/150 (29%), Gaps = 33/150 (22%)
Query: 72 MGLVNLQKIYLSRCRISVIDSKAFRGLTNLVDLDFSHNVLQTVPSDTFPDYPSLMKLTLS 131
+ LQ+ ++ + +A + + + + + + + + L
Sbjct: 8 VSNTFLQEPLRHSSNLTEMPVEAEN-VKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLR 66
Query: 132 GNPIKQIKTGAFQPLSYLVTLELSKCGIEVIEDAAFVGLDSLEWLKLDNNKITTI----- 186
+Q LEL+ G+ + + LE L N +T +
Sbjct: 67 DCLDRQ-----------AHELELNNLGLSSLPEL----PPHLESLVASCNSLTELPELPQ 111
Query: 187 ----------SGSNI--LPTGLHGIDLHHN 204
+ + LP L + + +N
Sbjct: 112 SLKSLLVDNNNLKALSDLPPLLEYLGVSNN 141
Score = 50.0 bits (120), Expect = 2e-06
Identities = 15/119 (12%), Positives = 32/119 (26%), Gaps = 25/119 (21%)
Query: 52 QVLDYTGNNLKTLHNEKFQKMGLVNLQKIYLSRCRISVIDS---------------KAFR 96
+ L + N+L + NL+++++ + +
Sbjct: 340 ERLIASFNHLAEVPEL------PQNLKQLHVEYNPLREFPDIPESVEDLRMNSHLAEVPE 393
Query: 97 GLTNLVDLDFSHNVLQTVPSDTFPDYPSLMKLTLSGNPIKQIKTGAFQPLSYLVTLELS 155
NL L N L+ P S+ L ++ + A + L
Sbjct: 394 LPQNLKQLHVETNPLREFP----DIPESVEDLRMNSERVVDPYEFAHETTDKLEDDVFE 448
Score = 31.9 bits (73), Expect = 0.74
Identities = 10/61 (16%), Positives = 21/61 (34%), Gaps = 6/61 (9%)
Query: 49 PNTQVLDYTGNNLKTLHNEKFQKMGLVNLQKIYLSRCRISVIDSKAFRGLTNLVDLDFSH 108
N + L N L+ + +++ + ++ R+ A L D F H
Sbjct: 396 QNLKQLHVETNPLREFPDI------PESVEDLRMNSERVVDPYEFAHETTDKLEDDVFEH 449
Query: 109 N 109
+
Sbjct: 450 H 450
>2y25_A Myomesin; structural protein, sarcomere, M-BAND,
immunoglobulin-like D; 3.50A {Homo sapiens}
Length = 317
Score = 76.5 bits (188), Expect = 3e-15
Identities = 26/124 (20%), Positives = 52/124 (41%), Gaps = 9/124 (7%)
Query: 235 PPRLSSVTIKQLSIDELACEPQITPSTFYLEIQEGKNVSLLCKVSAIPEAKITWLFDGVP 294
+KQ +I E + + IQEGK ++L C V P +++WL +
Sbjct: 203 EAYAEFQRLKQAAIAEKNRARVLGGLPDVVTIQEGKALNLTCNVWGDPPPEVSWLKNEKA 262
Query: 295 IQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCVAENQAGSTSSNYTIRI 354
+ + + + T + I + D+G + V +N+ GS +S++T+ +
Sbjct: 263 LAS-----DDHCNLKFEAGRT----AYFTINGVSTADSGKYGLVVKNKYGSETSDFTVSV 313
Query: 355 VLKE 358
+ E
Sbjct: 314 FIPE 317
Score = 69.2 bits (169), Expect = 8e-13
Identities = 24/128 (18%), Positives = 44/128 (34%), Gaps = 19/128 (14%)
Query: 265 EIQEGKNVSLLCKVSAI-PEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELL 323
E+ NV L CKV+ I E I W D I + + ++G LL
Sbjct: 17 EVTGECNVLLKCKVANIKKETHIVWYKDEREISVDEK--------HDFKDGI----CTLL 64
Query: 324 IYNSNIDDNGTFVCVAENQAGSTSSNYTI------RIVLKEENVEVVTVFPLEYVLIVSG 377
I + D G + + ++ G S + ++++ ++ L+ G
Sbjct: 65 ITEFSKKDAGIYEVILKDDRGKDKSRLKLVDEAFKELMMEVCKKIALSATDLKIQSTAEG 124
Query: 378 IISVCSLV 385
I +
Sbjct: 125 IQLYSFVT 132
Score = 55.7 bits (134), Expect = 2e-08
Identities = 20/122 (16%), Positives = 39/122 (31%), Gaps = 12/122 (9%)
Query: 240 SVTIKQLSIDELACEPQITPSTFYLEIQ-EGKNVSLLCKVSAI-PEAKITWLFDGVPIQN 297
+ + + +I S L+IQ + + L V+ + K+ W +G I+
Sbjct: 92 KLVDEAFKELMMEVCKKIALSATDLKIQSTAEGIQLYSFVTYYVEDLKVNWSHNGSAIRY 151
Query: 298 ESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCVAENQAGSTSSNYTIRIVLK 357
S+ T E + L I +D G +V + +
Sbjct: 152 -----SDRVKTGVTGE-----QIWLQINEPTPNDKGKYVMELFDGKTGHQKTVDLSGQAY 201
Query: 358 EE 359
+E
Sbjct: 202 DE 203
>2e7c_A Myosin-binding protein C, fast-type; IG-like domain, fast MYBP-C,
C-protein, skeletal muscle fast-isoform, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 118
Score = 71.7 bits (176), Expect = 3e-15
Identities = 19/120 (15%), Positives = 43/120 (35%), Gaps = 14/120 (11%)
Query: 239 SSVTIKQLSIDELACEPQITPSTFY---LEIQEGKNVSLLCKVSAIPEAKITWLFDGVPI 295
S + ++I E+A P+I + G+ ++L+ P ++ W G P+
Sbjct: 6 SGTLAQPVTIREIAEPPKIRLPRHLRQTYIRKVGEQLNLVVPFQGKPRPQVVWTKGGAPL 65
Query: 296 QNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCVAENQAGSTSSNYTIRIV 355
S T + + + + D+G + + + ++ IR+V
Sbjct: 66 D-------TSRVHVRTSDFD----TVFFVRQAARSDSGEYELSVQIENMKDTATIRIRVV 114
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest
center for structu genomics, MCSG, LRR, N- and
C-terminal helices; 2.00A {Xanthomonas campestris PV}
Length = 328
Score = 75.8 bits (187), Expect = 5e-15
Identities = 29/147 (19%), Positives = 57/147 (38%), Gaps = 15/147 (10%)
Query: 49 PNTQVLDYTGNNLKTLHNEKFQKMGLVNLQKIYLSRCRISVIDSKAFRGLTNLVDLDFSH 108
P L+ L ++ F+ L +LQ + + + + + L L +
Sbjct: 81 PGRVALELRSVPLPQFPDQAFR---LSHLQHMTIDAAGLMEL-PDTMQQFAGLETLTLAR 136
Query: 109 NVLQTVPSDTFPDYPSLMKLTLSGNP--------IKQIKT-GAFQPLSYLVTLELSKCGI 159
N L+ +P + L +L++ P + G Q L L +L L GI
Sbjct: 137 NPLRALP-ASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGI 195
Query: 160 EVIEDAAFVGLDSLEWLKLDNNKITTI 186
+ A+ L +L+ LK+ N+ ++ +
Sbjct: 196 RSL-PASIANLQNLKSLKIRNSPLSAL 221
Score = 60.0 bits (146), Expect = 1e-09
Identities = 36/172 (20%), Positives = 64/172 (37%), Gaps = 31/172 (18%)
Query: 52 QVLDYTGNNLKTLHNEKFQKMG-LVNLQKIYLSRC-RISVI--------DSKAFRGLTNL 101
+ L N L+ L + L L+++ + C ++ + S +GL NL
Sbjct: 130 ETLTLARNPLRALPAS----IASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNL 185
Query: 102 VDLDFSHNVLQTVPSDTFPDYPSLMKLTLSGNPIKQIKTGAFQPLSYLVTLELSKC-GIE 160
L ++++P+ + +L L + +P+ + A L L L+L C +
Sbjct: 186 QSLRLEWTGIRSLPAS-IANLQNLKSLKIRNSPLSAL-GPAIHHLPKLEELDLRGCTALR 243
Query: 161 VIEDAAFVGLDSLEWLKL-DNNKITTISGSNILP------TGLHGIDLHHNP 205
F G L+ L L D + + T LP T L +DL
Sbjct: 244 NYPP-IFGGRAPLKRLILKDCSNLLT------LPLDIHRLTQLEKLDLRGCV 288
Score = 52.3 bits (126), Expect = 3e-07
Identities = 25/143 (17%), Positives = 48/143 (33%), Gaps = 20/143 (13%)
Query: 52 QVLDYTGNNLKTLHNEKFQKMGLVNLQKIYLSRCRISVIDSKAFRGLTNLVDLDFSH-NV 110
Q L +++L L NL+ + + +S + A L L +LD
Sbjct: 186 QSLRLEWTGIRSLPASIAN---LQNLKSLKIRNSPLSAL-GPAIHHLPKLEELDLRGCTA 241
Query: 111 LQTVPSDTFPDYPSLMKLTLSG-NPIKQIKTGAFQP-----LSYLVTLELSKC-GIEVIE 163
L+ P F L +L L + + + P L+ L L+L C + +
Sbjct: 242 LRNYP-PIFGGRAPLKRLILKDCSNLLTL------PLDIHRLTQLEKLDLRGCVNLSRLP 294
Query: 164 DAAFVGLDSLEWLKLDNNKITTI 186
L + + + + +
Sbjct: 295 SL-IAQLPANCIILVPPHLQAQL 316
Score = 48.8 bits (117), Expect = 4e-06
Identities = 24/155 (15%), Positives = 48/155 (30%), Gaps = 23/155 (14%)
Query: 52 QVLDYTG-NNLKTLHNE----------------KFQKMGLVNLQKIYLSRCR--ISVIDS 92
+ L + G L+ H+ + N +I R + D
Sbjct: 15 ENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHSAWRQANSNNPQIETRTGRALKATADL 74
Query: 93 KAFRGLTNLVDLDFSHNVLQTVPSDTFPDYPSLMKLTLSGNPIKQIKTGAFQPLSYLVTL 152
V L+ L P F L +T+ + ++ Q + L TL
Sbjct: 75 LEDATQPGRVALELRSVPLPQFPDQAF-RLSHLQHMTIDAAGLMEL-PDTMQQFAGLETL 132
Query: 153 ELSKCGIEVIEDAAFVGLDSLEWLKL-DNNKITTI 186
L++ + + + L+ L L + ++T +
Sbjct: 133 TLARNPLRALPA-SIASLNRLRELSIRACPELTEL 166
Score = 46.9 bits (112), Expect = 1e-05
Identities = 21/132 (15%), Positives = 35/132 (26%), Gaps = 23/132 (17%)
Query: 76 NLQKIYLSRCR--ISVIDS------------------KAFRGLTNLVDLDFSHNVLQTVP 115
+ +Y D N + L+
Sbjct: 13 GRENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHSAWRQANSNNPQIETRTGRALKATA 72
Query: 116 SDTFP-DYPSLMKLTLSGNPIKQIKTGAFQPLSYLVTLELSKCGIEVIEDAAFVGLDSLE 174
P + L L P+ Q AF+ LS+L + + G+ + D LE
Sbjct: 73 DLLEDATQPGRVALELRSVPLPQFPDQAFR-LSHLQHMTIDAAGLMELPD-TMQQFAGLE 130
Query: 175 WLKLDNNKITTI 186
L L N + +
Sbjct: 131 TLTLARNPLRAL 142
>3puc_A Titin; I-SET IG-like domain, M-BAND, transferase; 0.96A {Homo
sapiens}
Length = 99
Score = 70.0 bits (172), Expect = 6e-15
Identities = 19/86 (22%), Positives = 30/86 (34%), Gaps = 10/86 (11%)
Query: 264 LEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELL 323
+ K + P W DG I S ++G L
Sbjct: 16 TTVSSDSVAKFAVKATGEPRPTAIWTKDGKAIT------QGGKYKLSEDKGG----FFLE 65
Query: 324 IYNSNIDDNGTFVCVAENQAGSTSSN 349
I+ ++ D+G + C +N AGS SS+
Sbjct: 66 IHKTDTSDSGLYTCTVKNSAGSVSSS 91
>3lcy_A Titin; A-BAND, IG tandem domains, ATP-binding, calmodulin-BI
cardiomyopathy, disease mutation, disulfide bond,
immunoglo domain, isopeptide bond; 2.50A {Homo sapiens}
Length = 197
Score = 73.2 bits (180), Expect = 6e-15
Identities = 21/106 (19%), Positives = 34/106 (32%), Gaps = 14/106 (13%)
Query: 254 EPQITPSTFYLE---IQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYS 310
PQ P E G + L P +TW +QN SE+ + +
Sbjct: 100 TPQFHPGYPLKEKYYGAVGSTLRLHVMYIGRPVPAMTWFHGQKLLQN-----SENITIEN 154
Query: 311 TEEGTEIKKSELLIYN-SNIDDNGTFVCVAENQAGSTSSNYTIRIV 355
TE + L++ N G + N G+ + + I
Sbjct: 155 TEHY-----THLVMKNVQRKTHAGKYKVQLSNVFGTVDAILDVEIQ 195
Score = 72.4 bits (178), Expect = 9e-15
Identities = 16/91 (17%), Positives = 35/91 (38%), Gaps = 10/91 (10%)
Query: 264 LEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELL 323
+ + G+ L C++ P I W G + S + + + +G L
Sbjct: 17 VTTKLGEAAQLSCQIVGRPLPDIKWYRFGKELIQ-----SRKYKM--SSDGR---THTLT 66
Query: 324 IYNSNIDDNGTFVCVAENQAGSTSSNYTIRI 354
+ +D G + C+A N+ G ++ + +
Sbjct: 67 VMTEEQEDEGVYTCIATNEVGEVETSSKLLL 97
>1nct_A Titin; cell adhesion, glycoprotein, transmembrane, repeat, brain,
immunoglobulin fold, alternative splicing, signal,
muscle protein; NMR {Homo sapiens} SCOP: b.1.1.4 PDB:
1ncu_A 1tnm_A 1tnn_A
Length = 106
Score = 70.1 bits (172), Expect = 7e-15
Identities = 22/91 (24%), Positives = 35/91 (38%), Gaps = 10/91 (10%)
Query: 264 LEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELL 323
+ + EG++ C P +TWL G + S H V +T+ S
Sbjct: 24 MTVYEGESARFSCDTDGEPVPTVTWLRKGQVLST-----SARHQVTTTKYK-----STFE 73
Query: 324 IYNSNIDDNGTFVCVAENQAGSTSSNYTIRI 354
I + D G + V EN G + +T+ I
Sbjct: 74 ISSVQASDEGNYSVVVENSEGKQEAEFTLTI 104
>1fhg_A Telokin; immunoglobulin fold, beta barrel, contractIle protein;
2.00A {Meleagris gallopavo} SCOP: b.1.1.4 PDB: 1tlk_A
Length = 154
Score = 71.8 bits (176), Expect = 7e-15
Identities = 24/111 (21%), Positives = 44/111 (39%), Gaps = 9/111 (8%)
Query: 239 SSVTIKQLSIDELACEPQITPSTFYLEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNE 298
+++++ ++ +P T + +E+ EG CKV P+ ++ W D P++
Sbjct: 26 EDAFLEEVAEEKPHVKPYFTKTILDMEVVEGSAARFDCKVEGYPDPEVMWFKDDNPVKE- 84
Query: 299 SMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCVAENQAGSTSSN 349
S + EEG L I DD+ + C A N G +
Sbjct: 85 ----SRHFQIDYDEEGN----CSLTISEVCGDDDAKYTCKAVNSLGEATCT 127
>3kvq_A Vascular endothelial growth factor receptor 2; vegfr2,
angiogenesis, ATP-binding, developmental protein,
differentiation, glycoprotein; 2.70A {Homo sapiens}
Length = 108
Score = 70.1 bits (172), Expect = 8e-15
Identities = 26/121 (21%), Positives = 42/121 (34%), Gaps = 15/121 (12%)
Query: 244 KQLSIDELACEPQITPSTFYLEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSAS 303
+QL++ E P IT + G+++ + C S P +I W D +
Sbjct: 1 RQLTVLERV-APTITGNLENQTTSIGESIEVSCTASGNPPPQIMWFKDNETLV------E 53
Query: 304 ESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCVAENQAGSTSSNYTIRIVLKEE--NV 361
+S V L I +D G + C A + G I +E N+
Sbjct: 54 DSGIVLKDGNRN------LTIRRVRKEDEGLYTCQACSVLGCAKVEAFFIIEGAQEKTNL 107
Query: 362 E 362
E
Sbjct: 108 E 108
>3caf_A Fibroblast growth factor receptor 2; FGFR2, D2, ATP-binding,
disease MU ectodermal dysplasia, glycoprotein,
heparin-binding, immuno domain, kinase; 1.96A {Homo
sapiens} PDB: 3cu1_A* 3euu_A 3dar_A 1wvz_A
Length = 100
Score = 69.8 bits (171), Expect = 8e-15
Identities = 18/92 (19%), Positives = 30/92 (32%), Gaps = 9/92 (9%)
Query: 264 LEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELL 323
+ V C P + WL +G + Y L+
Sbjct: 18 HAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQ-----EHRIGGYKVRNQ----HWSLI 68
Query: 324 IYNSNIDDNGTFVCVAENQAGSTSSNYTIRIV 355
+ + D G + CV EN+ GS + Y + +V
Sbjct: 69 MESVVPSDKGNYTCVVENEYGSINHTYHLDVV 100
>2yr3_A Myosin light chain kinase, smooth muscle; IG domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 99
Score = 69.3 bits (170), Expect = 1e-14
Identities = 25/91 (27%), Positives = 41/91 (45%), Gaps = 13/91 (14%)
Query: 264 LEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELL 323
+ EG++ L C V P +ITWL +G PIQ + + L
Sbjct: 21 CAVIEGQDFVLQCSVRGTPVPRITWLLNGQPIQ-------YARSTCEAGVAE------LH 67
Query: 324 IYNSNIDDNGTFVCVAENQAGSTSSNYTIRI 354
I ++ +D+GT+ C+AEN G S + + +
Sbjct: 68 IQDALPEDHGTYTCLAENALGQVSCSAWVTV 98
>2yd6_A PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sapiens} PDB:
2yd7_A 2yd2_A 2yd3_A 2yd4_A* 2yd8_A* 2yd5_A* 3pxh_A
Length = 212
Score = 72.5 bits (178), Expect = 1e-14
Identities = 24/94 (25%), Positives = 38/94 (40%), Gaps = 7/94 (7%)
Query: 255 PQITPSTFYLEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEG 314
P I ++ + ++LC S P+ +ITW D +P+ S+ ++
Sbjct: 109 PTIDMGPQLKVVERTRTATMLCAASGNPDPEITWFKDFLPVD-------TSNNNGRIKQL 161
Query: 315 TEIKKSELLIYNSNIDDNGTFVCVAENQAGSTSS 348
L I S D G + CVA N AG+ S
Sbjct: 162 RSESIGALQIEQSEESDQGKYECVATNSAGTRYS 195
Score = 69.1 bits (169), Expect = 2e-13
Identities = 20/114 (17%), Positives = 37/114 (32%), Gaps = 10/114 (8%)
Query: 255 PQITPSTFYLEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEG 314
P+ T + G S +C+ + P KI W G + N + +
Sbjct: 7 PRFTRTPVDQTGVSGGVASFICQATGDPRPKIVWNKKGKKVSN-----QRFEVIEFDDGS 61
Query: 315 TEIKKSELLIYNSNI-DDNGTFVCVAENQAGSTSSNYTIRIVLKEENVEVVTVF 367
+ L I D + CVA N G S + + ++ +++
Sbjct: 62 GSV----LRIQPLRTPRDEAIYECVASNNVGEISVSTRLTVLREDQIPRGFPTI 111
>2rik_A Titin; I-SET IG fold, poly-IG linear array, structural protein;
1.60A {Oryctolagus cuniculus} PDB: 2rjm_A
Length = 284
Score = 74.0 bits (182), Expect = 1e-14
Identities = 24/118 (20%), Positives = 42/118 (35%), Gaps = 16/118 (13%)
Query: 255 PQITPSTFYLEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEG 314
P +++ G++ + C V+ KITW D I+ ++ + E
Sbjct: 6 PFFDLKPVSVDLALGESGTFKCHVTGTAPIKITWAKDNREIRP-----GGNYKMTLVENT 60
Query: 315 TEIKKSELLIYNSNIDDNGTFVCVAENQAGSTSSNYTI------RIVLKEENVEVVTV 366
+ L + D G + C A N AG S + + R + K E +V
Sbjct: 61 -----ATLTVLKVTKGDAGQYTCYASNVAGKDSCSAQLGVQEPPRFIKKLEPSRIVKQ 113
Score = 72.5 bits (178), Expect = 4e-14
Identities = 27/105 (25%), Positives = 46/105 (43%), Gaps = 16/105 (15%)
Query: 266 IQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIY 325
+++ ++ CK+ PE K+ W D IQ S + E + L +Y
Sbjct: 111 VKQDEHTRYECKIGGSPEIKVLWYKDETEIQE-----SSKFRMSFVESV-----AVLEMY 160
Query: 326 NSNIDDNGTFVCVAENQAGSTSSNYTI------RIVLKEENVEVV 364
N +++D+G + C A N AGS SS+ ++ K VE +
Sbjct: 161 NLSVEDSGDYTCEAHNAAGSASSSTSLKVKEPPVFRKKPHPVETL 205
Score = 69.0 bits (169), Expect = 7e-13
Identities = 20/100 (20%), Positives = 41/100 (41%), Gaps = 10/100 (10%)
Query: 255 PQITPSTFYLEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEG 314
P +E +G +V L C++ P +++W D +++ + + + E
Sbjct: 193 PVFRKKPHPVETLKGADVHLECELQGTPPFQVSWHKDKRELRS-----GKKYKI--MSEN 245
Query: 315 TEIKKSELLIYNSNIDDNGTFVCVAENQAGSTSSNYTIRI 354
+ + I N + D G + C A N GS + +I +
Sbjct: 246 F---LTSIHILNVDSADIGEYQCKASNDVGSYTCVGSITL 282
>2v44_A NCAM2, neural cell adhesion molecule 2; phosphorylation,
immunoglobulin domain, IG, membrane, homphilic,
glycoprotein, transmembrane; 1.77A {Homo sapiens} PDB:
2xy2_A* 2vaj_A
Length = 189
Score = 71.7 bits (176), Expect = 2e-14
Identities = 17/103 (16%), Positives = 35/103 (33%), Gaps = 11/103 (10%)
Query: 255 PQITPSTFYLEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEG 314
E ++G++ ++C+VS+ P ++WL+ + +
Sbjct: 97 LTFREVVSPQEFKQGEDAEVVCRVSSSPAPAVSWLYHNEEVT-----TISDNRFAMLANN 151
Query: 315 TEIKKSELLIYNSNIDDNGTFVCVAENQAGSTSSNYTIRIVLK 357
L I N N D G + C +A I +++
Sbjct: 152 N------LQILNINKSDEGIYRCEGRVEARGEIDFRDIIVIVN 188
Score = 70.6 bits (173), Expect = 4e-14
Identities = 26/102 (25%), Positives = 42/102 (41%), Gaps = 10/102 (9%)
Query: 255 PQITPSTFYLEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEG 314
Q+T S +E+ G++ C PE+ + G I + V +EG
Sbjct: 3 LQVTISLSKVELSVGESKFFTCTAIGEPESIDWYNPQGEKI-------ISTQRVVVQKEG 55
Query: 315 TEIKKSELLIYNSNIDDNGTFVCVAENQAGSTSSNYTIRIVL 356
+S L IYN+NI+D G + C A + G T + +
Sbjct: 56 V---RSRLTIYNANIEDAGIYRCQATDAKGQTQEATVVLEIY 94
>3irg_B Obscurin-like protein 1; IG-like, titin, OBSL1, complex,
alternative splicing, ATP-binding, calcium,
calmodulin-binding, cardiomyopathy; 1.30A {Homo sapiens}
PDB: 3knb_B 2wp3_O* 2wwm_C 2wwk_O
Length = 107
Score = 69.0 bits (169), Expect = 2e-14
Identities = 20/91 (21%), Positives = 32/91 (35%), Gaps = 10/91 (10%)
Query: 264 LEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELL 323
+ + G L C V P + W G + S + +G E LL
Sbjct: 23 VRVVSGAEAELKCVVLGEPPPVVVWEKGGQQLA-------ASERLSFPADGAE---HGLL 72
Query: 324 IYNSNIDDNGTFVCVAENQAGSTSSNYTIRI 354
+ + D G +VC A N AG + + +
Sbjct: 73 LTAALPTDAGVYVCRARNAAGEAYAAAAVTV 103
>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL
structural protein; 3.30A {Oryctolagus cuniculus}
Length = 570
Score = 76.0 bits (187), Expect = 2e-14
Identities = 24/116 (20%), Positives = 42/116 (36%), Gaps = 16/116 (13%)
Query: 255 PQITPSTFYLEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEG 314
P +E +G +V L C++ P +++W D ++ E
Sbjct: 385 PVFRKKPHPVETLKGADVHLECELQGTPPFQVSWHKDKRELR-------SGKKYKIMSEN 437
Query: 315 TEIKKSELLIYNSNIDDNGTFVCVAENQAGSTSSNYTI------RIVLKEENVEVV 364
+ + I N + D G + C A N GS + +I R V K ++ V
Sbjct: 438 FL---TSIHILNVDSADIGEYQCKASNDVGSDTCVGSITLKAPPRFVKKLSDISTV 490
Score = 75.6 bits (186), Expect = 2e-14
Identities = 29/117 (24%), Positives = 48/117 (41%), Gaps = 17/117 (14%)
Query: 255 PQIT-PSTFYLEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEE 313
P+ +++ ++ CK+ PE K+ W D IQ S S E
Sbjct: 291 PRFIKKLEPSRIVKQDEHTRYECKIGGSPEIKVLWYKDETEIQ------ESSKFRMSFVE 344
Query: 314 GTEIKKSELLIYNSNIDDNGTFVCVAENQAGSTSSNYTI------RIVLKEENVEVV 364
+ L +YN +++D+G + C A N AGS SS+ ++ K VE +
Sbjct: 345 SV----AVLEMYNLSVEDSGDYTCEAHNAAGSASSSTSLKVKEPPVFRKKPHPVETL 397
Score = 72.9 bits (179), Expect = 1e-13
Identities = 22/110 (20%), Positives = 42/110 (38%), Gaps = 10/110 (9%)
Query: 245 QLSIDELACEPQITPSTFYLEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASE 304
+L++ E P +++ G++ + C V+ KITW D I+
Sbjct: 188 KLTLSEHEVPPFFDLKPVSVDLALGESGTFKCHVTGTAPIKITWAKDNREIRP-----GG 242
Query: 305 SHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCVAENQAGSTSSNYTIRI 354
++ + E + L + D G + C A N AG S + + +
Sbjct: 243 NYKMTLVENT-----ATLTVLKVTKGDAGQYTCYASNVAGKDSCSAQLGV 287
Score = 71.8 bits (176), Expect = 4e-13
Identities = 18/101 (17%), Positives = 34/101 (33%), Gaps = 9/101 (8%)
Query: 255 PQITPSTFYLEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEG 314
P+ + G+ V L + + W D I ES + S E
Sbjct: 478 PRFVKKLSDISTVVGEEVQLQATIEGAEPISVAWFKDKGEIVRES-----DNIWISYSEN 532
Query: 315 TEIKKSELLIYNSNIDDNGTFVCVAENQAGSTSSNYTIRIV 355
+ L + + G + C +N+AG+ T+ ++
Sbjct: 533 I----ATLQFSRAEPANAGKYTCQIKNEAGTQECFATLSVL 569
Score = 71.4 bits (175), Expect = 5e-13
Identities = 25/119 (21%), Positives = 45/119 (37%), Gaps = 19/119 (15%)
Query: 255 PQITPSTFYLEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEG 314
P ++E G+ ++L CKV PE +I W + ++ SA +
Sbjct: 6 PYFIEPLEHVEAAIGEPITLQCKVDGTPEIRIAWYKEHTKLR----SAPAYKMQFKNNVA 61
Query: 315 TEIKKSELLIYNSNIDDNGTFVCVAENQAGSTSSNYTI---------RIVLKEENVEVV 364
+ L+I + D G + C AEN G+ +S+ + K ++V
Sbjct: 62 S------LVINKVDHSDVGEYTCKAENSVGAVASSAVLVIKERKLPPSFARKLKDVHET 114
Score = 71.0 bits (174), Expect = 6e-13
Identities = 24/132 (18%), Positives = 45/132 (34%), Gaps = 12/132 (9%)
Query: 246 LSIDELACEPQITPSTFYLEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASES 305
L I E P + G V+ C+++ +++W DG +++ +
Sbjct: 93 LVIKERKLPPSFARKLKDVHETLGFPVAFECRINGSEPLQVSWYKDGELLKD-----DAN 147
Query: 306 HAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCVAENQAGSTSSNYTIRIVLKEENVEVVT 365
+ L I ++ G + C A N G+ SS + ++ L E V
Sbjct: 148 LQTSFIHNV-----ATLQILQTDQSHVGQYNCSASNPLGTASS--SAKLTLSEHEVPPFF 200
Query: 366 VFPLEYVLIVSG 377
V + G
Sbjct: 201 DLKPVSVDLALG 212
>1f97_A Junction adhesion molecule; immunoglobulin superfamily,
beta-sandwich fold, cell adhesion; 2.50A {Mus musculus}
SCOP: b.1.1.1 b.1.1.4
Length = 212
Score = 71.9 bits (176), Expect = 2e-14
Identities = 20/108 (18%), Positives = 38/108 (35%), Gaps = 3/108 (2%)
Query: 255 PQITPSTFYLEIQEGKNVSLLCKV-SAIPEAKITWLFDGVPIQNESMSASESHAVYSTEE 313
P + + G L C P ++ +W DG+ + + + S
Sbjct: 105 PSKPTISVPSSVTIGNRAVLTCSEHDGSPPSEYSWFKDGISMLTADAKKTRAFMNSSFT- 163
Query: 314 GTEIKKSELLIYNSNIDDNGTFVCVAENQAGSTSSNYTIRIVLKEENV 361
+ K +L+ D+G + C A+N G+ + + E NV
Sbjct: 164 -IDPKSGDLIFDPVTAFDSGEYYCQAQNGYGTAMRSEAAHMDAVELNV 210
Score = 63.4 bits (154), Expect = 2e-11
Identities = 14/101 (13%), Positives = 33/101 (32%), Gaps = 2/101 (1%)
Query: 255 PQITPSTFYLEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEG 314
+ + +++ E +++ L C S ++ W F S+ +
Sbjct: 2 GSVYTAQSDVQVPENESIKLTCTYSGFSSPRVEWKFVQGSTTALVCYNSQI--TAPYADR 59
Query: 315 TEIKKSELLIYNSNIDDNGTFVCVAENQAGSTSSNYTIRIV 355
S + + DNG + C+ + G +I +
Sbjct: 60 VTFSSSGITFSSVTRKDNGEYTCMVSEEGGQNYGEVSIHLT 100
>2a38_A Titin; Z1Z2, structural protein; 2.00A {Homo sapiens} PDB: 1ya5_A
2f8v_A
Length = 194
Score = 71.3 bits (175), Expect = 2e-14
Identities = 19/105 (18%), Positives = 40/105 (38%), Gaps = 8/105 (7%)
Query: 255 PQITPSTFYLEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEG 314
P T + + EG + +S P +++W DG I +++ S +G
Sbjct: 6 PTFTQPLQSVVVLEGSTATFEAHISGFPVPEVSWFRDGQVIS----TSTLPGVQISFSDG 61
Query: 315 TEIKKSELLIYNSNIDDNGTFVCVAENQAGSTSSNYTIRIVLKEE 359
++L I ++G + A N +G +S + + +
Sbjct: 62 R----AKLTIPAVTKANSGRYSLKATNGSGQATSTAELLVKAETA 102
Score = 68.2 bits (167), Expect = 2e-13
Identities = 23/112 (20%), Positives = 44/112 (39%), Gaps = 14/112 (12%)
Query: 245 QLSIDELACEPQIT--PSTFYLEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSA 302
+L + P + + +++G V L +V+ IP + + DG IQ+
Sbjct: 94 ELLVKAETAPPNFVQRLQS--MTVRQGSQVRLQVRVTGIPTPVVKFYRDGAEIQS----- 146
Query: 303 SESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCVAENQAGSTSSNYTIRI 354
S + + LLI + +D+GT+ A N G +S + +
Sbjct: 147 SLDFQISQEGDL-----YSLLIAEAYPEDSGTYSVNATNSVGRATSTAELLV 193
>3ojm_B Fibroblast growth factor receptor 2; beta trefoil motif,
immunoglobulin-like domain, growth facto factor
receptor, extracellular; 2.10A {Homo sapiens} PDB:
1nun_B* 3oj2_C 2fdb_P 1iil_E 1ev2_E 1e0o_B* 1ii4_E
1djs_A 3ojv_C* 1cvs_C 1fq9_C* 1evt_C
Length = 231
Score = 72.2 bits (177), Expect = 2e-14
Identities = 18/107 (16%), Positives = 33/107 (30%), Gaps = 9/107 (8%)
Query: 264 LEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELL 323
+ V C P + WL +G Y L+
Sbjct: 29 HAVPAANTVKFRCPAGGNPMPTMRWLKNGKEF-----KQEHRIGGYKVRNQH----WSLI 79
Query: 324 IYNSNIDDNGTFVCVAENQAGSTSSNYTIRIVLKEENVEVVTVFPLE 370
+ + D G + CV EN+ GS + Y + +V + + ++
Sbjct: 80 MESVVPSDKGNYTCVVENEYGSINHTYHLDVVERSRHRPILQAGLPA 126
Score = 64.9 bits (158), Expect = 7e-12
Identities = 17/97 (17%), Positives = 37/97 (38%), Gaps = 1/97 (1%)
Query: 264 LEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSE-L 322
G +V +CKV + + I W+ ++ + G +E L
Sbjct: 128 ASTVVGGDVEFVCKVYSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKHSGINSSNAEVL 187
Query: 323 LIYNSNIDDNGTFVCVAENQAGSTSSNYTIRIVLKEE 359
++N D G ++C N G + + + ++ K++
Sbjct: 188 ALFNVTEADAGEYICKVSNYIGQANQSAWLTVLPKQQ 224
>2iep_A Muscle-specific kinase receptor; beta-sandwich, signaling
protein,transferase; 2.21A {Rattus norvegicus}
Length = 192
Score = 70.5 bits (173), Expect = 4e-14
Identities = 22/108 (20%), Positives = 39/108 (36%), Gaps = 11/108 (10%)
Query: 249 DELACEPQITPSTFYLEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAV 308
++L P IT ++ + + +C V + P+ +I+W + + I
Sbjct: 2 EKLPKAPVITTPLETVDALVEEVATFMCAVESYPQPEISWTRNKILI-------KLFDTR 54
Query: 309 YSTEEGTEIKKSELLIYNSNIDDNGTFVCVAENQAGSTSSNYTIRIVL 356
YS E L I + D+G + C A N G + V
Sbjct: 55 YSIREN----GQLLTILSVEDSDDGIYCCTANNGVGGAVESCGALQVK 98
Score = 67.1 bits (164), Expect = 6e-13
Identities = 25/101 (24%), Positives = 42/101 (41%), Gaps = 13/101 (12%)
Query: 255 PQITPSTFYLEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEG 314
P+IT ++I EG L C P+ ++W+ ++ E+ + E G
Sbjct: 101 PKITRPPINVKIIEGLKAVLPCTTMGNPKPSVSWIKGDSALR-------ENSRIAVLESG 153
Query: 315 TEIKKSELLIYNSNIDDNGTFVCVAENQAGSTSSNYTIRIV 355
+ L I+N +D G + CVA+N G+ S V
Sbjct: 154 S------LRIHNVQKEDAGQYRCVAKNSLGTAYSKLVKLEV 188
>2v5t_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; phosphorylation,
immunoglobulin domain, membrane, glycoprote adhesion,
transmembrane; HET: NAG; 2.00A {Homo sapiens}
Length = 189
Score = 70.6 bits (173), Expect = 4e-14
Identities = 22/101 (21%), Positives = 40/101 (39%), Gaps = 12/101 (11%)
Query: 254 EPQITPSTFYLEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEE 313
+ +F + G+ ++ C+ S PE I+W +G I+ E+
Sbjct: 98 AISMPQKSFNATAERGEEMTFSCRASGSPEPAISWFRNGKLIE-------ENEKYILKGS 150
Query: 314 GTEIKKSELLIYNSNIDDNGTFVCVAENQAGSTSSNYTIRI 354
+EL + N D G +VC A N+AG +++
Sbjct: 151 N-----TELTVRNIINSDGGPYVCRATNKAGEDEKQAFLQV 186
Score = 69.0 bits (169), Expect = 1e-13
Identities = 18/102 (17%), Positives = 36/102 (35%), Gaps = 11/102 (10%)
Query: 255 PQITPSTFYLEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEG 314
E ++G++ ++C+VS+ P ++WL+ + S +
Sbjct: 3 LTFREVVSPQEFKQGEDAEVVCRVSSSPAPAVSWLYHNEEVTTIS-----DNRFAMLANN 57
Query: 315 TEIKKSELLIYNSNIDDNGTFVCVAENQAGSTSSNYTIRIVL 356
L I N N D G + C +A I +++
Sbjct: 58 N------LQILNINKSDEGIYRCEGRVEARGEIDFRDIIVIV 93
>1wwc_A Protein (NT-3 growth factor receptor TRKC); TRK receptor, receptor
tyrosine kinase, 3D-domain swapping, transferase; 1.90A
{Homo sapiens} SCOP: b.1.1.4
Length = 118
Score = 68.3 bits (167), Expect = 4e-14
Identities = 18/101 (17%), Positives = 35/101 (34%), Gaps = 9/101 (8%)
Query: 255 PQITPSTFYLEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEG 314
P++ E + + V P + WL +G P++ + E + EG
Sbjct: 9 PRVV---SLEEPELRLEHCIEFVVRGNPPPTLHWLHNGQPLRESKIIHVEYYQEGEISEG 65
Query: 315 TEIKKSELLIYNSNIDDNGTFVCVAENQAGSTSSNYTIRIV 355
LL +NG + +A+N G+ + +
Sbjct: 66 C------LLFNKPTHYNNGNYTLIAKNPLGTANQTINGHFL 100
>2va4_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; transmembrane,
phosphorylation, immunoglobulin domain, membrane,
glycoprotein; HET: NAG; 1.9A {Homo sapiens} PDB: 2xy1_A*
Length = 192
Score = 70.6 bits (173), Expect = 4e-14
Identities = 23/115 (20%), Positives = 45/115 (39%), Gaps = 17/115 (14%)
Query: 255 PQITPSTFYLEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEG 314
+ +F + G+ ++ C+ S PE I+W +G I+ Y +
Sbjct: 5 ISMPQKSFNATAERGEEMTFSCRASGSPEPAISWFRNGKLIEENEK--------YILKGS 56
Query: 315 TEIKKSELLIYNSNIDDNGTFVCVAENQAGSTSSNYTIRI-----VLKEENVEVV 364
+EL + N D G +VC A N+AG +++ +++ +N
Sbjct: 57 N----TELTVRNIINSDGGPYVCRATNKAGEDEKQAFLQVFVQPHIIQLKNETTY 107
Score = 61.0 bits (148), Expect = 7e-11
Identities = 23/102 (22%), Positives = 34/102 (33%), Gaps = 8/102 (7%)
Query: 255 PQITPSTFYLEIQEGKNVSLLCKVSAIPEAKITWL--FDGVPIQNESMSASESHAVYSTE 312
P I E V+L+C P +ITW DG S V
Sbjct: 96 PHII-QLKNETTYENGQVTLVCDAEGEPIPEITWKRAVDGFTFTEGDKSLDGRIEVKGQH 154
Query: 313 EGTEIKKSELLIYNSNIDDNGTFVCVAENQAGSTSSNYTIRI 354
S L I + + D+G + C A ++ G + + I
Sbjct: 155 GS-----SSLHIKDVKLSDSGRYDCEAASRIGGHQKSMYLDI 191
>2eo9_A Roundabout homolog 1; beta-sandwich, IG-fold, H-ROBO-1, deleted in
U twenty twenty, neurogenesis, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 118
Score = 68.3 bits (167), Expect = 5e-14
Identities = 20/100 (20%), Positives = 34/100 (34%), Gaps = 12/100 (12%)
Query: 255 PQITPSTFYLEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEG 314
P I + L C + P I W DGV + ++ + E G
Sbjct: 9 PVIRQGPVNQTVAVDGTFVLSCVATGSPVPTILWRKDGVLVS------TQDSRIKQLENG 62
Query: 315 TEIKKSELLIYNSNIDDNGTFVCVAENQAGSTSSNYTIRI 354
L I + + D G + C+A +G + + I +
Sbjct: 63 V------LQIRYAKLGDTGRYTCIASTPSGEATWSAYIEV 96
>2cqv_A MLCK, myosin light chain kinase, smooth muscle and non- muscle
isozymes; IG fold, structural genomics, NPPSFA; NMR
{Homo sapiens} SCOP: b.1.1.4
Length = 114
Score = 67.7 bits (166), Expect = 6e-14
Identities = 26/101 (25%), Positives = 44/101 (43%), Gaps = 10/101 (9%)
Query: 255 PQITPSTFYLEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEG 314
PQI +++ G++V L KV+ TW+ IQ SE V ++E G
Sbjct: 8 PQIIQFPEDQKVRAGESVELFGKVTGTQPITCTWMKFRKQIQE-----SEHMKVENSENG 62
Query: 315 TEIKKSELLIYNSNIDDNGTFVCVAENQAGSTSSNYTIRIV 355
S+L I + + G + + EN+ GS + + +V
Sbjct: 63 -----SKLTILAARQEHCGCYTLLVENKLGSRQAQVNLTVV 98
>1nbq_A JAM, junctional adhesion molecule 1, PAM-1; reovirus receptor,
tight junction formation, immunoglobulin superfamily,
immune system; 2.90A {Homo sapiens} SCOP: b.1.1.1
b.1.1.4 PDB: 3eoy_G
Length = 209
Score = 70.4 bits (172), Expect = 7e-14
Identities = 18/101 (17%), Positives = 38/101 (37%), Gaps = 2/101 (1%)
Query: 255 PQITPSTFYLEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEG 314
+ S + I E V L C S ++ W FD ++ A S E+
Sbjct: 5 VTVHSSEPEVRIPENNPVKLSCAYSGFSSPRVEWKFDQGDTTRLVCYNNKITA--SYEDR 62
Query: 315 TEIKKSELLIYNSNIDDNGTFVCVAENQAGSTSSNYTIRIV 355
+ + + +D GT+ C+ + G++ ++++
Sbjct: 63 VTFLPTGITFKSVTREDTGTYTCMVSEEGGNSYGEVKVKLI 103
Score = 68.1 bits (166), Expect = 5e-13
Identities = 19/101 (18%), Positives = 35/101 (34%), Gaps = 4/101 (3%)
Query: 255 PQITPSTFYLEIQEGKNVSLLCKVS-AIPEAKITWLFDGVPIQNESMSASESHAVYSTEE 313
P G L C P ++ TW DG+ + + + A ++
Sbjct: 108 PSKPTVNIPSSATIGNRAVLTCSEQDGSPPSEYTWFKDGIVMPT---NPKSTRAFSNSSY 164
Query: 314 GTEIKKSELLIYNSNIDDNGTFVCVAENQAGSTSSNYTIRI 354
EL+ + D G + C A N G+ ++ +R+
Sbjct: 165 VLNPTTGELVFDPLSASDTGEYSCEARNGYGTPMTSNAVRM 205
>1epf_A NCAM, protein (neural cell adhesion molecule); immunoglobulin fold,
glycoprotein; 1.85A {Rattus norvegicus} SCOP: b.1.1.4
b.1.1.4 PDB: 2ncm_A 3ncm_A
Length = 191
Score = 69.9 bits (171), Expect = 8e-14
Identities = 16/101 (15%), Positives = 30/101 (29%), Gaps = 11/101 (10%)
Query: 255 PQITPSTFYLEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEG 314
+ E +EG++ ++C V + I W G + +
Sbjct: 101 LMFKNAPTPQEFKEGEDAVIVCDVVSSLPPTIIWKHKGRDVI-----LKKDVRFIVLSNN 155
Query: 315 TEIKKSELLIYNSNIDDNGTFVCVAENQAGSTSSNYTIRIV 355
L I D GT+ C A + I+++
Sbjct: 156 Y------LQIRGIKKTDEGTYRCEGRILARGEINFKDIQVI 190
Score = 63.3 bits (154), Expect = 1e-11
Identities = 25/96 (26%), Positives = 43/96 (44%), Gaps = 10/96 (10%)
Query: 255 PQITPSTFYLEIQEGKNVSLLCKVSAIP-EAKITWLF-DGVPIQNESMSASESHAVYSTE 312
Q+ EI G++ LC+V+ + I+W +G + + +V +
Sbjct: 3 LQVDIVPSQGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLS----PNQQRISVVWND 58
Query: 313 EGTEIKKSELLIYNSNIDDNGTFVCVAENQAGSTSS 348
+ + S L IYN+NIDD G + CV + G+ S
Sbjct: 59 DDS----STLTIYNANIDDAGIYKCVVTAEDGTQSE 90
>3grw_A Fibroblast growth factor receptor 3; FGFR3, protein-protein
complex, receptor tyrosine kinas binding, immunoglobulin
domain, kinase, membrane, nucleotid binding; HET: NAG;
2.10A {Homo sapiens}
Length = 241
Score = 70.7 bits (173), Expect = 8e-14
Identities = 22/123 (17%), Positives = 43/123 (34%), Gaps = 11/123 (8%)
Query: 255 PQITPSTFYLEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEG 314
++ L + V C + P I+WL +G + E
Sbjct: 18 ERMDKKL--LAVPAANTVRFRCPAAGNPTPSISWLKNGREFRGEHRIGGIKL-------- 67
Query: 315 TEIKKSELLIYNSNIDDNGTFVCVAENQAGSTSSNYTIRIVLKEENVEVVTVFPLEYVLI 374
++ L++ + D G + CV EN+ GS YT+ ++ + + ++
Sbjct: 68 -RHQQWSLVMESVVPSDRGNYTCVVENKFGSIRQTYTLDVLERSPHRPILQAGLPANQTA 126
Query: 375 VSG 377
V G
Sbjct: 127 VLG 129
Score = 62.3 bits (151), Expect = 6e-11
Identities = 17/92 (18%), Positives = 34/92 (36%), Gaps = 2/92 (2%)
Query: 265 EIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSE--L 322
G +V CKV + + I WL ++ + +E +++ L
Sbjct: 125 TAVLGSDVEFHCKVYSDAQPHIQWLKHVEVNGSKVGPDGTPYVTVLKSWISESVEADVRL 184
Query: 323 LIYNSNIDDNGTFVCVAENQAGSTSSNYTIRI 354
+ N + D G ++C A N G + + +
Sbjct: 185 RLANVSERDGGEYLCRATNFIGVAEKAFWLSV 216
>2v9r_A Roundabout homolog 1; proto-oncogene, differentiation,
phosphorylation, disease MU neuronal development,
immunoglobulin domain, chemotaxis; 2.00A {Homo sapiens}
PDB: 2v9q_A
Length = 212
Score = 70.2 bits (172), Expect = 9e-14
Identities = 20/86 (23%), Positives = 31/86 (36%), Gaps = 14/86 (16%)
Query: 265 EIQEGKNVSLLCKV-SAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELL 323
+ G+ + C+ PE I+W DG P+ + + G L+
Sbjct: 122 MVAVGEPAVMECQPPRGHPEPTISWKKDGSPLD-------DKDERITIRGGK------LM 168
Query: 324 IYNSNIDDNGTFVCVAENQAGSTSSN 349
I + D G +VCV N G S
Sbjct: 169 ITYTRKSDAGKYVCVGTNMVGERESE 194
Score = 65.2 bits (159), Expect = 4e-12
Identities = 22/102 (21%), Positives = 39/102 (38%), Gaps = 3/102 (2%)
Query: 247 SIDELACEPQITPSTFYLEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESH 306
S+ + P+I L + +G+ +L CK P I W G ++ +
Sbjct: 2 SLRQEDFPPRIVEHPSDLIVSKGEPATLNCKAEGRPTPTIEWYKGGERVETDKDDPRSHR 61
Query: 307 AVYSTEEGTEIKKSELLIYNSNIDDNGTFVCVAENQAGSTSS 348
+ G+ + ++ + D G +VCVA N G S
Sbjct: 62 ML--LPSGS-LFFLRIVHGRKSRPDEGVYVCVARNYLGEAVS 100
>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain,
vegfr-2, growth factor receptor, VEGF LI
hormone-signaling protein complex, angiogenesis; 3.20A
{Homo sapiens} PDB: 3v6b_R
Length = 772
Score = 74.0 bits (181), Expect = 9e-14
Identities = 23/116 (19%), Positives = 38/116 (32%), Gaps = 13/116 (11%)
Query: 239 SSVTIKQLSIDELACEPQITPSTFYLEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNE 298
++QL++ E P IT + G+++ + C S P +I W D +
Sbjct: 652 RHCVVRQLTVLERV-APTITGNLENQTTSIGESIEVSCTASGNPPPQIMWFKDNETLV-- 708
Query: 299 SMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCVAENQAGSTSSNYTIRI 354
+S V L I +D G + C A + G I
Sbjct: 709 ----EDSGIVLKDGNRN------LTIRRVRKEDEGLYTCQACSVLGCAKVEAFFII 754
Score = 69.8 bits (170), Expect = 2e-12
Identities = 17/114 (14%), Positives = 38/114 (33%), Gaps = 15/114 (13%)
Query: 245 QLSIDELACEPQITPSTFYLEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASE 304
+ + E + +E G+ V + K P +I W +G+P+
Sbjct: 321 FVRVHEKPFVAFGSGMESLVEATVGERVRIPAKYLGYPPPEIKWYKNGIPL-------ES 373
Query: 305 SHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCVAENQAGSTSSNYTIRIVLKE 358
+H + + L I + D G + + N ++ + +V+
Sbjct: 374 NHTIKAG--------HVLTIMEVSERDTGNYTVILTNPISKEKQSHVVSLVVYV 419
Score = 63.6 bits (154), Expect = 2e-10
Identities = 13/101 (12%), Positives = 34/101 (33%)
Query: 255 PQITPSTFYLEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEG 314
+ + +E+ G+ + L C I + ++ +++ +
Sbjct: 225 DVVLSPSHGIELSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSE 284
Query: 315 TEIKKSELLIYNSNIDDNGTFVCVAENQAGSTSSNYTIRIV 355
+ S L I D G + C A + + ++ +R+
Sbjct: 285 MKKFLSTLTIDGVTRSDQGLYTCAASSGLMTKKNSTFVRVH 325
Score = 60.2 bits (145), Expect = 2e-09
Identities = 16/123 (13%), Positives = 36/123 (29%), Gaps = 11/123 (8%)
Query: 255 PQITPSTFYLEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEG 314
P+++ L I+ + + C+ + + WL+ +E V +G
Sbjct: 32 PRLSIQKDILTIKANTTLQITCRG----QRDLDWLWPNNQSGSEQ-----RVEVTECSDG 82
Query: 315 TEIKKSELLIYNSNIDDNGTFVCVAENQAGSTSSNYTIRIVLKEENVEVVTVFPLEYVLI 374
L I +D G + C ++ ++ V + Y+
Sbjct: 83 LFC--KTLTIPKVIGNDTGAYKCFYRETDLASVIYVYVQDYRSPFIASVSDQHGVVYITE 140
Query: 375 VSG 377
Sbjct: 141 NKN 143
Score = 59.4 bits (143), Expect = 3e-09
Identities = 15/105 (14%), Positives = 38/105 (36%), Gaps = 10/105 (9%)
Query: 265 EIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKK----- 319
+ E ++VSL C +TW G + + + + ++
Sbjct: 560 QPTEQESVSLWCTADRSTFENLTWYKLGPQPLPIHVGELPTPVCKNLDTLWKLNATMFSN 619
Query: 320 -----SELLIYNSNIDDNGTFVCVAENQAGSTSSNYTIRIVLKEE 359
+ + N+++ D G +VC+A+++ ++ + E
Sbjct: 620 STNDILIMELKNASLQDQGDYVCLAQDRKTKKRHCVVRQLTVLER 664
Score = 57.5 bits (138), Expect = 1e-08
Identities = 21/127 (16%), Positives = 33/127 (25%), Gaps = 27/127 (21%)
Query: 255 PQITPSTFY---LEIQEGKNVSLLCKVSAIPE-AKITWLFDGVPIQNESMSASESHAVYS 310
PQI + Q G +L C V AIP I W + S + S
Sbjct: 421 PQIGEKSLISPVDSYQYGTTQTLTCTVYAIPPPHHIHWYWQLEEECANEPSQAVSVTNPY 480
Query: 311 TEEGTEIK-----------------------KSELLIYNSNIDDNGTFVCVAENQAGSTS 347
E K+ + + + + C A N+ G
Sbjct: 481 PCEEWRSVEDFQGGNKIEVNKNQFALIEGKNKTVSTLVIQAANVSALYKCEAVNKVGRGE 540
Query: 348 SNYTIRI 354
+ +
Sbjct: 541 RVISFHV 547
Score = 54.8 bits (131), Expect = 8e-08
Identities = 19/124 (15%), Positives = 33/124 (26%), Gaps = 14/124 (11%)
Query: 255 PQITPSTFYLEIQEGKNVSLLCKVSAIP-EAKITWLFDGVPIQNESMSASESHAVYSTEE 313
Y+ + K V + C S + + + S
Sbjct: 129 VSDQHGVVYITENKNKTVVIPCLGSISNLNVSLCARYPEKRFVPDGNRISWDS------- 181
Query: 314 GTEIKKSELLIYNSNIDDNGTFVCVAENQAGSTSSNYTIRIVLKEENVEVVTVFPLEYVL 373
K I + I G C A+ S S I +V+ + V + P +
Sbjct: 182 -----KKGFTIPSYMISYAGMVFCEAKINDESYQSIMYI-VVVVGYRIYDVVLSPSHGIE 235
Query: 374 IVSG 377
+ G
Sbjct: 236 LSVG 239
Score = 31.3 bits (70), Expect = 1.5
Identities = 4/36 (11%), Positives = 16/36 (44%), Gaps = 3/36 (8%)
Query: 331 DNGTFVCVAENQAGSTSSNYTI---RIVLKEENVEV 363
++CV A + ++ R+ ++++ + +
Sbjct: 8 AVALWLCVETRAASVGLPSVSLDLPRLSIQKDILTI 43
>1qz1_A Neural cell adhesion molecule 1, 140 kDa isoform; IG modules, NCAM;
2.00A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4
PDB: 1ie5_A
Length = 291
Score = 71.4 bits (175), Expect = 1e-13
Identities = 28/104 (26%), Positives = 49/104 (47%), Gaps = 8/104 (7%)
Query: 254 EPQITPSTFYLEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEE 313
Q S G++V+L+C PE ++W DG PI+N + +++
Sbjct: 196 TVQARQSIVNATANLGQSVTLVCDADGFPEPTMSWTKDGEPIEN---EEEDDEKHIFSDD 252
Query: 314 GTEIKKSELLIYNSNIDDNGTFVCVAENQAGSTSSNYTIRIVLK 357
SEL I N + +D +VC+AEN+AG ++ +++ K
Sbjct: 253 S-----SELTIRNVDKNDEAEYVCIAENKAGEQDASIHLKVFAK 291
Score = 68.7 bits (168), Expect = 1e-12
Identities = 16/104 (15%), Positives = 31/104 (29%), Gaps = 11/104 (10%)
Query: 255 PQITPSTFYLEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEG 314
+ E +EG++ ++C V + I W G + +
Sbjct: 101 LMFKNAPTPQEFKEGEDAVIVCDVVSSLPPTIIWKHKGRDV-----ILKKDVRFIVLSNN 155
Query: 315 TEIKKSELLIYNSNIDDNGTFVCVAENQAGSTSSNYTIRIVLKE 358
L I D GT+ C A + I++++
Sbjct: 156 Y------LQIRGIKKTDEGTYRCEGRILARGEINFKDIQVIVNV 193
Score = 57.6 bits (139), Expect = 3e-09
Identities = 26/118 (22%), Positives = 41/118 (34%), Gaps = 17/118 (14%)
Query: 255 PQITPSTFYLEIQEGKNVSLLCKVSAIP-EAKITWL-FDGVPIQNESMSASESHAVYSTE 312
Q+ EI G++ LC+V+ + I+W +G + S +
Sbjct: 3 LQVDIVPSQGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDDS- 61
Query: 313 EGTEIKKSELLIYNSNIDDNGTFVCVAENQAGSTSSNYT-------IRIVLKEENVEV 363
S L IYN+NIDD G + CV + G+ S + E
Sbjct: 62 -------STLTIYNANIDDAGIYKCVVTAEDGTQSEATVNVKIFQKLMFKNAPTPQEF 112
>2bk8_A Connectin, M1, titin heart isoform N2-B; IG domain, M-BAND,
structural protein, muscle, antibo; 1.69A {Homo sapiens}
Length = 97
Score = 66.2 bits (162), Expect = 1e-13
Identities = 20/92 (21%), Positives = 38/92 (41%), Gaps = 11/92 (11%)
Query: 264 LEIQEGKNVSLLCKVSAIPE-AKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSEL 322
+EG +V +CK+ + ++TW F ++N + E+G + L
Sbjct: 11 AVGEEGGHVKYVCKIENYDQSTQVTWYFGVRQLENSE------KYEITYEDGV----AIL 60
Query: 323 LIYNSNIDDNGTFVCVAENQAGSTSSNYTIRI 354
+ + D+GT+ C N G SS + +
Sbjct: 61 YVKDITKLDDGTYRCKVVNDYGEDSSYAELFV 92
>2yd9_A Receptor-type tyrosine-protein phosphatase S; hydrolase; HET: NAG
B3P; 2.60A {Homo sapiens}
Length = 304
Score = 71.0 bits (174), Expect = 2e-13
Identities = 16/111 (14%), Positives = 36/111 (32%), Gaps = 16/111 (14%)
Query: 245 QLSIDELACEPQITPSTFYLEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASE 304
L + P+ + EI G NV++ C P + W+ +
Sbjct: 196 NLYVRVQNVAPRFSILPMSHEIMPGGNVNITCVAVGSPMPYVKWMQGAEDLT-------- 247
Query: 305 SHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCVAENQAGSTSSNYTIRIV 355
++ ++ +++ D+ + CVA + G + I +
Sbjct: 248 --------PEDDMPVGRNVLELTDVKDSANYTCVAMSSLGVIEAVAQITVK 290
Score = 67.2 bits (164), Expect = 3e-12
Identities = 28/123 (22%), Positives = 49/123 (39%), Gaps = 11/123 (8%)
Query: 255 PQITPSTFYLEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEG 314
P I ++ + ++LC S P+ +ITW D +P+ ++ + + G
Sbjct: 109 PNIDMGPQLKVVERTRTATMLCAASGNPDPEITWFKDFLPVD----PSASNGRIKQLRSG 164
Query: 315 TEIKKSELLIYNSNIDDNGTFVCVAENQAGSTSSNYTIRIVLKEENVEVVTVFPLEYVLI 374
L I +S D G + CVA N AG S+ + ++ +NV I
Sbjct: 165 A------LQIESSEETDQGKYECVATNSAGVRYSS-PANLYVRVQNVAPRFSILPMSHEI 217
Query: 375 VSG 377
+ G
Sbjct: 218 MPG 220
Score = 65.2 bits (159), Expect = 1e-11
Identities = 17/114 (14%), Positives = 39/114 (34%), Gaps = 10/114 (8%)
Query: 255 PQITPSTFYLEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEG 314
P+ G S +C+ + P+ ++TW G + ++ + E
Sbjct: 7 PRFIKEPKDQIGVSGGVASFVCQATGDPKPRVTWNKKGKKV-----NSQRFETIEFDESA 61
Query: 315 TEIKKSELLIYNSNI-DDNGTFVCVAENQAGSTSSNYTIRIVLKEENVEVVTVF 367
+ L I D + CVA+N G + + + ++ +++
Sbjct: 62 GAV----LRIQPLRTPRDENVYECVAQNSVGEITVHAKLTVLREDQLPSGFPNI 111
>2wv3_A Neuroplastin; igcam, membrane, glycoprotein, cell membrane, cell
adhesion, transmembrane, disulfide bond, alternative
splicing; HET: NAG; 1.95A {Rattus norvegicus}
Length = 190
Score = 68.7 bits (168), Expect = 2e-13
Identities = 26/101 (25%), Positives = 41/101 (40%), Gaps = 6/101 (5%)
Query: 255 PQITPSTFYLEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEG 314
P IT EG++ + CK P + W + E ++S + + E
Sbjct: 93 PDITGHKRSENKNEGQDAMMYCKSVGYPHPEWMWRKKENGVFEEISNSSGRFFIINKENY 152
Query: 315 TEIKKSELLIYNSNI-DDNGTFVCVAENQAGSTSSNYTIRI 354
+EL I N I +D G + C A N GS S + +R+
Sbjct: 153 -----TELNIVNLQITEDPGEYECNATNSIGSASVSTVLRV 188
Score = 56.8 bits (137), Expect = 2e-09
Identities = 21/119 (17%), Positives = 39/119 (32%), Gaps = 24/119 (20%)
Query: 254 EPQITPSTFYLEIQEGKNVSLLCKVSAIPEAKIT--WLFDGVPIQNESMSASESHAVYST 311
EP+I S + V+L C +++ + W +GV + + + S
Sbjct: 3 EPRIVTSEEVIIRDSLLPVTLQCNLTSSSHTLMYSYWTKNGVEL-------TATRKNASN 55
Query: 312 EEGTEIKKSELLIYNSNIDDNGTFVCVAENQAGSTSSNYTI------RIVLKEENVEVV 364
E I +D+G + CV + +N TI I + +
Sbjct: 56 --------MEYRINKPRAEDSGEYHCVYHF-VSAPKANATIEVKAAPDITGHKRSENKN 105
>1ry7_B FGFR-3, fibroblast growth factor receptor 3; FGF-FGFR complex, beta
trefoil, IG domain, growth factor/growth factor receptor
complex; 3.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4
Length = 334
Score = 71.2 bits (174), Expect = 2e-13
Identities = 22/114 (19%), Positives = 42/114 (36%), Gaps = 9/114 (7%)
Query: 264 LEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELL 323
L + V C + P I+WL +G + E ++ + L+
Sbjct: 133 LAVPAANTVRFRCPAAGNPTPSISWLKNGREFRGEH---RIGGIKLRHQQWS------LV 183
Query: 324 IYNSNIDDNGTFVCVAENQAGSTSSNYTIRIVLKEENVEVVTVFPLEYVLIVSG 377
+ + D G + CV EN+ GS YT+ ++ + + ++ V G
Sbjct: 184 MESVVPSDRGNYTCVVENKFGSIRQTYTLDVLERSPHRPILQAGLPANQTAVLG 237
Score = 63.1 bits (153), Expect = 8e-11
Identities = 22/101 (21%), Positives = 39/101 (38%), Gaps = 4/101 (3%)
Query: 266 IQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSE---L 322
G +V CKV + + I WL ++ + G E L
Sbjct: 234 AVLGSDVEFHCKVYSDAQPHIQWLKHVEVNGSKVGPDGTPYVTVLKTAGANTTDKELEVL 293
Query: 323 LIYNSNIDDNGTFVCVAENQAGSTSSNYTIRIV-LKEENVE 362
++N +D G + C+A N G + + + ++ +EE VE
Sbjct: 294 SLHNVTFEDAGEYTCLAGNSIGFSHHSAWLVVLPAEEELVE 334
Score = 55.4 bits (133), Expect = 3e-08
Identities = 15/97 (15%), Positives = 24/97 (24%), Gaps = 15/97 (15%)
Query: 264 LEIQEGKNVSLLCKV-SAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSEL 322
L G V L C P W+ DG + E + L
Sbjct: 18 LVFGSGDAVELSCPPPGGGPMGPTVWVKDGTGL--------------VPSERVLVGPQRL 63
Query: 323 LIYNSNIDDNGTFVCVAENQAGSTSSNYTIRIVLKEE 359
+ N++ +D+G + C
Sbjct: 64 QVLNASHEDSGAYSCRQRLTQRVLCHFSVRVTDAPSS 100
>3qr2_A Basigin; CD147, EMMPRIN, immunoglobulin-like domain, beta sheet,
STRU genomics, berkeley structural genomics center,
BSGC, cell A; 2.30A {Homo sapiens} PDB: 3qqn_A
Length = 137
Score = 67.0 bits (163), Expect = 2e-13
Identities = 20/122 (16%), Positives = 38/122 (31%), Gaps = 3/122 (2%)
Query: 248 IDELACEPQITPSTFYLEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESM---SASE 304
+ + + + G +V L C+ P +I W F+G + +
Sbjct: 15 VPRGSHMAGFVQAPLSQQRWVGGSVELHCEAVGSPVPEIQWWFEGQGPNDICSQLWDGAR 74
Query: 305 SHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCVAENQAGSTSSNYTIRIVLKEENVEVV 364
V+ + S + I +D GT+ C A N R+ V+
Sbjct: 75 LDRVHIHATYHQHAASTISIDTLVEEDTGTYECRASNDPDRNHLTRAPRVKWVRAQAVVL 134
Query: 365 TV 366
+
Sbjct: 135 VL 136
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine
rich repeat domain, type three effector, salmonella
virulence factor; 1.90A {Salmonella typhimurium}
Length = 622
Score = 72.6 bits (178), Expect = 2e-13
Identities = 34/184 (18%), Positives = 63/184 (34%), Gaps = 28/184 (15%)
Query: 21 SCICKWKGGKQTVECVNKSLITVVEGMDPNTQVLDYTGNNLKTLHNEKFQKMGLVNLQKI 80
+C+ G + L T+ + + + L NNL +L L+ +
Sbjct: 36 ACLNN---GNAVLNVGESGLTTLPDCLPAHITTLVIPDNNLTSLPAL------PPELRTL 86
Query: 81 YLSRCRISVIDSKAFRGLTNLVDLDFSHNVLQTVPSDTFPDYPSLMKLTLSGNPIKQIKT 140
+S +++ + GL L L +PS L KL + GN + +
Sbjct: 87 EVSGNQLTSL-PVLPPGLLELSIFSNPLTHLPALPS-------GLCKLWIFGNQLTSLPV 138
Query: 141 GAFQPLSYLVTLELSKCGIEVIEDAAFVGLDSLEWLKLDNNKITTISGSNILPTGLHGID 200
L L +S + + L L NN++T++ P+GL +
Sbjct: 139 L----PPGLQELSVSDNQLASLPA----LPSELCKLWAYNNQLTSLPML---PSGLQELS 187
Query: 201 LHHN 204
+ N
Sbjct: 188 VSDN 191
Score = 72.2 bits (177), Expect = 3e-13
Identities = 34/173 (19%), Positives = 62/173 (35%), Gaps = 34/173 (19%)
Query: 49 PNTQVLDYTGNNLKTLHNEKFQKMGLVNLQKIYLSRCRISVIDSKAFRGLTNLVDLDFSH 108
P Q L + N L +L L K++ +++ + + L +L S
Sbjct: 141 PGLQELSVSDNQLASLPAL------PSELCKLWAYNNQLTSLPM----LPSGLQELSVSD 190
Query: 109 NVLQTVPSD---------------TFPDYP-SLMKLTLSGNPIKQIKTGAFQPLSYLVTL 152
N L ++P+ + P P L +L +SGN + + S L L
Sbjct: 191 NQLASLPTLPSELYKLWAYNNRLTSLPALPSGLKELIVSGNRLTSLPVL----PSELKEL 246
Query: 153 ELSKCGIEVIEDAAFVGLDSLEWLKLDNNKITTISGSNILPTGLHGIDLHHNP 205
+S + + L L + N++T + S I + ++L NP
Sbjct: 247 MVSGNRLTSLPM----LPSGLLSLSVYRNQLTRLPESLIHLSSETTVNLEGNP 295
Score = 64.1 bits (156), Expect = 1e-10
Identities = 29/167 (17%), Positives = 61/167 (36%), Gaps = 22/167 (13%)
Query: 52 QVLDYTGNNLKTLHNEKFQKMGLVNLQKIYLSRCRISVIDSKAFRGLTNLVDLDFSHNVL 111
Q L + N L +L L K++ R++ + + + L +L S N L
Sbjct: 184 QELSVSDNQLASLPTL------PSELYKLWAYNNRLTSLPA----LPSGLKELIVSGNRL 233
Query: 112 QTVPSDTFPDYPSLMKLTLSGNPIKQIKTGAFQPLSYLVTLELSKCGIEVIEDAAFVGLD 171
++P L +L +SGN + + S L++L + + + + ++ + L
Sbjct: 234 TSLP----VLPSELKELMVSGNRLTSLPML----PSGLLSLSVYRNQLTRLPES-LIHLS 284
Query: 172 SLEWLKLDNNKITTISGSNILPTGLHGIDLHHNPWT-CDCLLIGLRR 217
S + L+ N ++ + + + P D R
Sbjct: 285 SETTVNLEGNPLSERTLQA--LREITSAPGYSGPIIRFDMAGASAPR 329
>2vr9_A Roundabout 1, ROBO; immunoglobulin-like domain, AXON guidance, cell
adhesion, immunoglobulin domain; 3.2A {Drosophila
melanogaster} PDB: 2vra_A*
Length = 217
Score = 68.7 bits (168), Expect = 3e-13
Identities = 30/94 (31%), Positives = 44/94 (46%), Gaps = 8/94 (8%)
Query: 265 EIQEGKNVSLLC-KVSAIPEAKITWLFDGVPIQ-NESMSASESHAVYSTEEGTEIKKSEL 322
+ +G+ L C IPE + W+ DGVP+ ++MS S V + G L
Sbjct: 119 RVAKGETALLECGPPKGIPEPTLIWIKDGVPLDDLKAMSFGASSRVRIVDGGN------L 172
Query: 323 LIYNSNIDDNGTFVCVAENQAGSTSSNYTIRIVL 356
LI N D G + C+A+N G+ S+Y IV
Sbjct: 173 LISNVEPIDEGNYKCIAQNLVGTRESSYAKLIVQ 206
Score = 64.9 bits (158), Expect = 6e-12
Identities = 24/101 (23%), Positives = 43/101 (42%), Gaps = 7/101 (6%)
Query: 255 PQITPSTFYLEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEG 314
P+I L +++ + +L CKV PE I W DG P+ + + ++G
Sbjct: 10 PRIIEHPTDLVVKKNEPATLNCKVEGKPEPTIEWFKDGEPVS----TNEKKSHRVQFKDG 65
Query: 315 TEIKKSELLIYNSNIDDNGTFVCVAENQAGST-SSNYTIRI 354
+ D G + CVA+N+ G S + +++I
Sbjct: 66 ALF--FYRTMQGKKEQDGGEYWCVAKNRVGQAVSRHASLQI 104
>2wim_A N-CAM 2, NCAM2, neural cell adhesion molecule 2; cell membrane,
transmembrane, immunoglobulin; HET: NDG NAG; 3.00A {Homo
sapiens}
Length = 291
Score = 69.8 bits (171), Expect = 4e-13
Identities = 22/106 (20%), Positives = 42/106 (39%), Gaps = 12/106 (11%)
Query: 254 EPQITPSTFYLEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEE 313
+ +F + G+ ++ C+ S PE I+W +G I+ E+
Sbjct: 194 AISMPQKSFNATAERGEEMTFSCRASGSPEPAISWFRNGKLIE-------ENEKYILKGS 246
Query: 314 GTEIKKSELLIYNSNIDDNGTFVCVAENQAGSTSSNYTIRIVLKEE 359
+EL + N D G +VC A N+AG +++ ++
Sbjct: 247 N-----TELTVRNIINSDGGPYVCRATNKAGEDEKQAFLQVFVQHH 287
Score = 67.9 bits (166), Expect = 1e-12
Identities = 18/102 (17%), Positives = 36/102 (35%), Gaps = 11/102 (10%)
Query: 255 PQITPSTFYLEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEG 314
E ++G++ ++C+VS+ P ++WL+ + S +
Sbjct: 99 LTFREVVSPQEFKQGEDAEVVCRVSSSPAPAVSWLYHNEEVTTIS-----DNRFAMLANN 153
Query: 315 TEIKKSELLIYNSNIDDNGTFVCVAENQAGSTSSNYTIRIVL 356
L I N N D G + C +A I +++
Sbjct: 154 N------LQILNINKSDEGIYRCEGRVEARGEIDFRDIIVIV 189
Score = 63.7 bits (155), Expect = 4e-11
Identities = 24/94 (25%), Positives = 37/94 (39%), Gaps = 10/94 (10%)
Query: 255 PQITPSTFYLEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEG 314
Q+T S +E+ G++ C PE+ + G I + + V S
Sbjct: 5 LQVTISLSKVELSVGESKFFTCTAIGEPESIDWYNPQGEKIISTQRVVVQKEGVRSR--- 61
Query: 315 TEIKKSELLIYNSNIDDNGTFVCVAENQAGSTSS 348
L IYN+NI+D G + C A + G T
Sbjct: 62 -------LTIYNANIEDAGIYRCQATDAKGQTQE 88
>3k0w_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1,
isoform 2; hydrolase, immunoglobulin domain, nucleus,
protease; 2.80A {Homo sapiens}
Length = 218
Score = 68.4 bits (167), Expect = 4e-13
Identities = 20/118 (16%), Positives = 37/118 (31%), Gaps = 25/118 (21%)
Query: 254 EPQITPSTFYLEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEE 313
+ QI ++ G + L C P W + +P+ +E+
Sbjct: 118 KLQICVEPTSQKLMPGSTLVLQCVAVGSPIPHYQWFKNELPLTHET-------------- 163
Query: 314 GTEIKKSELLIYNSNIDDNGTFVCVAENQAGSTSSNYTIRIV------LKEENVEVVT 365
K ++ +++ GT+ C N S S I+ +N E T
Sbjct: 164 -----KKLYMVPYVDLEHQGTYWCHVYNDRDSQDSKKVEIIIDELNNLGHPDNKEQTT 216
Score = 63.4 bits (154), Expect = 2e-11
Identities = 19/94 (20%), Positives = 31/94 (32%), Gaps = 19/94 (20%)
Query: 255 PQITPSTFYLEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEG 314
+IT + + G+ V L C+ + P + W I N +
Sbjct: 19 SKITVNPESKAVLAGQFVKLCCRATGHPFVQYQWFKMNKEIPNGN--------------- 63
Query: 315 TEIKKSELLIYNSNIDDNGTFVCVAENQAGSTSS 348
SEL+ ++ D G +VC N S
Sbjct: 64 ----TSELIFNAVHVKDAGFYVCRVNNNFTFEFS 93
>1wit_A Twitchin 18TH IGSF module; immunoglobulin superfamily, I SET,
muscle protein; NMR {Caenorhabditis elegans} SCOP:
b.1.1.4 PDB: 1wiu_A
Length = 93
Score = 64.7 bits (158), Expect = 4e-13
Identities = 14/100 (14%), Positives = 35/100 (35%), Gaps = 10/100 (10%)
Query: 255 PQITPSTFYLEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEG 314
P+I ++ ++I+ G +L P+ TW + V +
Sbjct: 3 PKILTASRKIKIKAGFTHNLEVDFIGAPDPTATWTVGDSGAAL-----APELLVDAKSST 57
Query: 315 TEIKKSELLIYNSNIDDNGTFVCVAENQAGSTSSNYTIRI 354
T + ++ D+G + +N+ G + + + +
Sbjct: 58 T-----SIFFPSAKRADSGNYKLKVKNELGEDEAIFEVIV 92
>1rhf_A Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3 family, cellular
adhesion, ligand-independent DIME mutational analysis,
transferase; HET: EPE; 1.96A {Homo sapiens} SCOP:
b.1.1.1 b.1.1.4
Length = 182
Score = 67.5 bits (165), Expect = 4e-13
Identities = 21/117 (17%), Positives = 42/117 (35%), Gaps = 15/117 (12%)
Query: 254 EPQITPSTFYLEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEE 313
++ + L + +G+ V L C V + E I W+ DG +QN +Y
Sbjct: 2 GLKLMGAPVKLTVSQGQPVKLNCSVEGMEEPDIQWVKDGAVVQN-------LDQLYIPVS 54
Query: 314 GTEIKKSELLIYNSNIDDNGTFVCVAENQAGS-TSSNYTI------RIVLKEENVEV 363
L + + D G + C E+ + S + ++ +++ V
Sbjct: 55 EQHWIGF-LSLKSVERSDAGRYWCQVEDGGETEISQPVWLTVEGVPFFTVEPKDLAV 110
Score = 59.4 bits (144), Expect = 2e-10
Identities = 18/95 (18%), Positives = 28/95 (29%), Gaps = 21/95 (22%)
Query: 264 LEIQEGKNVSLLCKVSAIPE-AKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSEL 322
L + L C+ PE I W I + S
Sbjct: 108 LAVPPNAPFQLSCEAVGPPEPVTIVWWRGTTKIGGPA-------------------PSPS 148
Query: 323 LIYNSNIDDNGTFVCVAENQAGSTSSNYTIRIVLK 357
++ + + + F C A N G SS T + L+
Sbjct: 149 VLNVTGVTQSTMFSCEAHNLKGLASSR-TATVHLQ 182
>3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo
sapiens} PDB: 3p40_A*
Length = 404
Score = 70.7 bits (173), Expect = 5e-13
Identities = 16/101 (15%), Positives = 40/101 (39%), Gaps = 11/101 (10%)
Query: 255 PQITPSTFYLEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEG 314
P L + G++ L+C+ + P+ + W+ +G P+Q+ + +
Sbjct: 313 PYWLDEPKNLILAPGEDGRLVCRANGNPKPTVQWMVNGEPLQS-----APPNPNREVAGD 367
Query: 315 TEIKKSELLIYNSNIDDNGTFVCVAENQAGSTSSNYTIRIV 355
T ++ ++ I + C N+ G +N + ++
Sbjct: 368 T------IIFRDTQISSRAVYQCNTSNEHGYLLANAFVSVL 402
Score = 63.7 bits (155), Expect = 8e-11
Identities = 23/124 (18%), Positives = 41/124 (33%), Gaps = 10/124 (8%)
Query: 255 PQITPSTF-YLEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEE 313
P IT + + N+ + C+ P W + A +
Sbjct: 17 PTITKQSAKDHIVDPRDNILIECEAKGNPAPSFHWTRNSRFFN----IAKDPRVSMRRRS 72
Query: 314 GTEIKKSELLIYNSNIDDNGTFVCVAENQAGSTSSNYTIRIVLKEENVEVVTVFPLEYVL 373
GT + + + G + C A N+ G+ SN RI L+ + L+ V+
Sbjct: 73 GTLV--IDFRSGGRPEEYEGEYQCFARNKFGTALSN---RIRLQVSKSPLWPKENLDPVV 127
Query: 374 IVSG 377
+ G
Sbjct: 128 VQEG 131
Score = 63.3 bits (154), Expect = 1e-10
Identities = 24/100 (24%), Positives = 41/100 (41%), Gaps = 15/100 (15%)
Query: 255 PQITPSTFYLEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEG 314
PQ T S+ + G ++ L C S +P I W G + + A +
Sbjct: 225 PQGTASS--QMVLRGMDLLLECIASGVPTPDIAWYKKGGDLPS-------DKAKFENFNK 275
Query: 315 TEIKKSELLIYNSNIDDNGTFVCVAENQAGSTSSNYTIRI 354
L I N + +D+G + C+A N+ GS ++R+
Sbjct: 276 A------LRITNVSEEDSGEYFCLASNKMGSIRHTISVRV 309
Score = 53.3 bits (128), Expect = 1e-07
Identities = 16/87 (18%), Positives = 26/87 (29%), Gaps = 14/87 (16%)
Query: 264 LEIQEGKNVSLLCKVSA-IPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSEL 322
+ +QEG ++L C +P I W+ + ++ V G L
Sbjct: 126 VVVQEGAPLTLQCNPPPGLPSPVIFWMSSSMEP------ITQDKRVSQGHNGD------L 173
Query: 323 LIYN-SNIDDNGTFVCVAENQAGSTSS 348
N D + C A T
Sbjct: 174 YFSNVMLQDMQTDYSCNARFHFTHTIQ 200
>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker,
immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A
Length = 642
Score = 71.5 bits (175), Expect = 5e-13
Identities = 27/128 (21%), Positives = 42/128 (32%), Gaps = 21/128 (16%)
Query: 255 PQITPSTFYLEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEG 314
T S Y + G N+SL C ++ P A+ +WL DG Q+
Sbjct: 382 DDPTISPSYTYYRPGVNLSLSCHAASNPPAQYSWLIDGNIQQHT---------------- 425
Query: 315 TEIKKSELLIYNSNIDDNGTFVCVAENQAGSTSSNYTIRIVLKEENVEVVTVFPLEYVLI 374
EL I N ++G + C A N A S I + E + +
Sbjct: 426 -----QELFISNITEKNSGLYTCQANNSASGHSRTTVKTITVSAELPKPSISSNNSKPVE 480
Query: 375 VSGIISVC 382
++
Sbjct: 481 DKDAVAFT 488
Score = 66.1 bits (161), Expect = 3e-11
Identities = 23/138 (16%), Positives = 49/138 (35%), Gaps = 23/138 (16%)
Query: 245 QLSIDELACEPQITPSTFYLEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASE 304
L++ P I+P + G+N++L C ++ P A+ +W +G Q+
Sbjct: 196 ILNVLYGPDAPTISPLN--TSYRSGENLNLSCHAASNPPAQYSWFVNGTFQQST------ 247
Query: 305 SHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCVAENQAGSTSSNYTIRIVLKEENVEVV 364
EL I N ++++G++ C A N + I + E +
Sbjct: 248 ---------------QELFIPNITVNNSGSYTCQAHNSDTGLNRTTVTTITVYAEPPKPF 292
Query: 365 TVFPLEYVLIVSGIISVC 382
+ +++
Sbjct: 293 ITSNNSNPVEDEDAVALT 310
Score = 65.4 bits (159), Expect = 4e-11
Identities = 23/124 (18%), Positives = 45/124 (36%), Gaps = 21/124 (16%)
Query: 231 ICSVPPRLSSVTIKQLSIDELACEPQITPSTFYLEIQEGKNVSLLCKVSAIPEAKITWLF 290
+C + +S+ +++D L S G N++L C ++ P + +W
Sbjct: 536 VCGIQNSVSANRSDPVTLDVLYGPDTPIISPPDSSYLSGANLNLSCHSASNPSPQYSWRI 595
Query: 291 DGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCVAENQAGSTSSNY 350
+G+P Q+ L I ++NGT+ C N A +++
Sbjct: 596 NGIPQQHT---------------------QVLFIAKITPNNNGTYACFVSNLATGRNNSI 634
Query: 351 TIRI 354
I
Sbjct: 635 VKSI 638
Score = 56.1 bits (135), Expect = 3e-08
Identities = 19/143 (13%), Positives = 40/143 (27%), Gaps = 14/143 (9%)
Query: 231 ICSVPPRLSSVTIKQLSIDELACEPQITPSTF-YLEIQEGKNVSLLCKVSAIPEAKITWL 289
V P+ + S+ +++ V+ C+ A W
Sbjct: 87 TLHVIKSDLVNEEATGQFRVYPELPKPSISSNNSKPVEDKDAVAFTCEPETQD-ATYLWW 145
Query: 290 FDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCVAENQAGSTSSN 349
+ + S T L ++N +D ++ C +N + S+
Sbjct: 146 VNNQSLP------VSPRLQLSNGNRT------LTLFNVTRNDTASYKCETQNPVSARRSD 193
Query: 350 YTIRIVLKEENVEVVTVFPLEYV 372
I VL + ++ Y
Sbjct: 194 SVILNVLYGPDAPTISPLNTSYR 216
Score = 55.0 bits (132), Expect = 7e-08
Identities = 18/123 (14%), Positives = 33/123 (26%), Gaps = 6/123 (4%)
Query: 256 QITPSTFYLEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESM------SASESHAVY 309
++T + + EGK V LL +W N + + +
Sbjct: 1 KLTIESTPFNVAEGKEVLLLVHNLPQHLFGYSWYKGERVDGNRQIIGYVIGTQQATPGPA 60
Query: 310 STEEGTEIKKSELLIYNSNIDDNGTFVCVAENQAGSTSSNYTIRIVLKEENVEVVTVFPL 369
+ + LLI N +D G + V E ++
Sbjct: 61 YSGREIIYPNASLLIQNIIQNDTGFYTLHVIKSDLVNEEATGQFRVYPELPKPSISSNNS 120
Query: 370 EYV 372
+ V
Sbjct: 121 KPV 123
Score = 53.8 bits (129), Expect = 2e-07
Identities = 19/118 (16%), Positives = 41/118 (34%), Gaps = 14/118 (11%)
Query: 239 SSVTIKQLSIDELACEPQITPSTFYLEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNE 298
+ T+ +++ +P IT + +++ V+L C+ W + +
Sbjct: 275 NRTTVTTITVYAEPPKPFITSNNSN-PVEDEDAVALTCEPEIQN-TTYLWWVNNQSLPVS 332
Query: 299 SMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCVAENQAGSTSSNYTIRIVL 356
S + T L + + +D G + C +N+ S+ I VL
Sbjct: 333 P------RLQLSNDNRT------LTLLSVTRNDVGPYECGIQNELSVDHSDPVILNVL 378
Score = 53.4 bits (128), Expect = 2e-07
Identities = 15/95 (15%), Positives = 29/95 (30%), Gaps = 13/95 (13%)
Query: 255 PQITPSTFYLEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEG 314
S +++ V+ C+ A W +G + S
Sbjct: 468 KPSISSNNSKPVEDKDAVAFTCEPEAQNTT-YLWWVNGQSLP------VSPRLQLSNGNR 520
Query: 315 TEIKKSELLIYNSNIDDNGTFVCVAENQAGSTSSN 349
T L ++N +D +VC +N + S+
Sbjct: 521 T------LTLFNVTRNDARAYVCGIQNSVSANRSD 549
>3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical
bundle cytokine, hematopoietic cytokine-receptor
complex, cell surface, EXTR complex; 7.80A {Homo
sapiens}
Length = 527
Score = 71.3 bits (174), Expect = 5e-13
Identities = 15/114 (13%), Positives = 36/114 (31%), Gaps = 20/114 (17%)
Query: 256 QITPSTFYLEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGT 315
T S+ EI + + + A P+ + TW F E +
Sbjct: 328 NATNSSEDYEIDQYEEFCFSVRFKAYPQIRCTWTFSRKSFPCEQKGLDNGY--------- 378
Query: 316 EIKKSELLIYNSNIDDNGTFVCVAENQAGSTSSNYTI------RIVLKEENVEV 363
+ + ++ G ++ AEN + +T+ +++ + +
Sbjct: 379 -----SISKFCNHKHQPGEYIFHAENDDAQFTKMFTLNIRRKPQVLAEASASQA 427
Score = 67.4 bits (164), Expect = 9e-12
Identities = 13/100 (13%), Positives = 34/100 (34%), Gaps = 11/100 (11%)
Query: 255 PQITPSTFYLEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEG 314
+E+ +++L V A W+F + + ++ V S
Sbjct: 49 SGTVYEAAAVEVDVSASITLQVLVDAPGNISCLWVFKHSSLNCQPHFDLQNRGVVS---- 104
Query: 315 TEIKKSELLIYNSNIDDNGTFVCVAENQAGSTSSNYTIRI 354
++I G ++ +++A + + +T+ I
Sbjct: 105 -------MVILKMTETQAGEYLLFIQSEATNYTILFTVSI 137
Score = 62.4 bits (151), Expect = 3e-10
Identities = 16/119 (13%), Positives = 25/119 (21%), Gaps = 14/119 (11%)
Query: 260 STFYLEIQ-------EGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTE 312
F L I+ E C P TW N + +E
Sbjct: 406 KMFTLNIRRKPQVLAEASASQASCFSDGYPLPSWTWKKCSDKSPNCTEEITEGVWNRKAN 465
Query: 313 EGTEIK-KSELLIYNSNIDDNGTFVCVAENQAGSTSSNYTI------RIVLKEENVEVV 364
+ S + S C A N G++ + +
Sbjct: 466 RKVFGQWVSSSTLNMSEAIKGFLVKCCAYNSLGTSCETILLNSPGPFPFIQDGGTKHHH 524
Score = 62.0 bits (150), Expect = 4e-10
Identities = 14/95 (14%), Positives = 36/95 (37%), Gaps = 7/95 (7%)
Query: 255 PQITPSTFYLEIQEGKNVSLLCKVSAI-PEAKITWLFDGVPIQNESMSASESHAVYSTEE 313
PQ T L ++ G+ + + CK + +TW + ++ + ++ +
Sbjct: 230 PQTTLPQ--LFLKVGEPLWIRCKAVHVNHGFGLTWELENKALEEGNYFEMSTY----STN 283
Query: 314 GTEIKKSELLIYNSNIDDNGTFVCVAENQAGSTSS 348
T I+ + + +D G + C + ++
Sbjct: 284 RTMIRILFAFVSSVARNDTGYYTCSSSKHPSQSAL 318
Score = 49.3 bits (117), Expect = 3e-06
Identities = 22/124 (17%), Positives = 38/124 (30%), Gaps = 23/124 (18%)
Query: 255 PQITPSTFYLEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEG 314
T Y E + +L+C ++PE + W+ + ES AV EE
Sbjct: 141 LLYTLRRPYFRKMENQ-DALVCISESVPEPIVEWVLCDSQGE---SCKEESPAVVKKEEK 196
Query: 315 TEIKKSELLIYNSNIDDNGTFVCVAENQAG-STSSNYTIRIVLKEENVEVVTVFPLEYVL 373
+ C A N+ G + +TI ++ L +
Sbjct: 197 VLHE-----------LFGTDIRCCARNELGRECTRLFTI-------DLNQTPQTTLPQLF 238
Query: 374 IVSG 377
+ G
Sbjct: 239 LKVG 242
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold,
ligase; 2.80A {Shigella flexneri 2A}
Length = 571
Score = 71.2 bits (174), Expect = 6e-13
Identities = 27/162 (16%), Positives = 51/162 (31%), Gaps = 30/162 (18%)
Query: 49 PNTQVLDYTGNNLKTLHNEKFQKMGLVNLQKIYLSRCRISVIDSKAFRGLTNLVDLDFSH 108
P VL+ T N L +L +L+ + R+S + +L LD +
Sbjct: 80 PQITVLEITQNALISLPEL------PASLEYLDACDNRLSTLPEL----PASLKHLDVDN 129
Query: 109 NVLQTVPSDTFPDYPSLMKLTLSGNPIKQIKTGAFQP--LSYLVTLELSKCGIEVIEDAA 166
N L +P L + N + + P + L L + + + +
Sbjct: 130 NQLTMLPELP----ALLEYINADNNQLTML------PELPTSLEVLSVRNNQLTFLPE-- 177
Query: 167 FVGLDSLEWLKLDNNKITT----ISGSNILPTGLHGIDLHHN 204
+SLE L + N + + ++ N
Sbjct: 178 --LPESLEALDVSTNLLESLPAVPVRNHHSEETEIFFRCREN 217
Score = 60.0 bits (145), Expect = 2e-09
Identities = 24/149 (16%), Positives = 53/149 (35%), Gaps = 21/149 (14%)
Query: 59 NNLKTLHNEKFQKMG-LVNLQKIYLSRCRISVIDSKAFRGLTNLVDLDFSHNVLQTVPSD 117
N + + + F +R + + + +L + L ++P +
Sbjct: 20 NTISGTYADYFSAWDKWEKQALPGENRNEAVSLLKECL--INQFSELQLNRLNLSSLPDN 77
Query: 118 TFPDYPSLMKLTLSGNPIKQIKTGAFQP--LSYLVTLELSKCGIEVIEDAAFVGLDSLEW 175
P + L ++ N + + P + L L+ + + + SL+
Sbjct: 78 LP---PQITVLEITQNALISL------PELPASLEYLDACDNRLSTLPEL----PASLKH 124
Query: 176 LKLDNNKITTISGSNILPTGLHGIDLHHN 204
L +DNN++T + LP L I+ +N
Sbjct: 125 LDVDNNQLTMLPE---LPALLEYINADNN 150
Score = 45.3 bits (107), Expect = 6e-05
Identities = 17/111 (15%), Positives = 38/111 (34%), Gaps = 15/111 (13%)
Query: 100 NLVDL--DFSHNVLQTVPSDTFPDYPSLMKLTLSGNPIKQIKTGAFQP----LSYLVTLE 153
N L + +N + +D F + K L G + + ++ L+
Sbjct: 9 NNFSLSQNSFYNTISGTYADYFSAWDKWEKQALPGENRNEAVS---LLKECLINQFSELQ 65
Query: 154 LSKCGIEVIEDAAFVGLDSLEWLKLDNNKITTISGSNILPTGLHGIDLHHN 204
L++ + + D + L++ N + ++ P L +D N
Sbjct: 66 LNRLNLSSLPDNLP---PQITVLEITQNALISLPEL---PASLEYLDACDN 110
>2ens_A Advanced glycosylation END product-specific receptor;
beta-sandwich, C2-SET, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 96
Score = 64.4 bits (157), Expect = 6e-13
Identities = 24/105 (22%), Positives = 39/105 (37%), Gaps = 19/105 (18%)
Query: 254 EPQITPSTFYLEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEE 313
E Q+ + G V+L C+V A P +I W+ DGVP+
Sbjct: 10 EVQLVVEPEGGAVAPGGTVTLTCEVPAQPSPQIHWMKDGVPLPLPP-------------- 55
Query: 314 GTEIKKSELLIYNSNIDDNGTFVCVAENQAGSTSSNYTIRIVLKE 358
L++ D GT+ CVA + + + + I + E
Sbjct: 56 -----SPVLILPEIGPQDQGTYSCVATHSSHGPQESRAVSISIIE 95
>3bfo_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1
(isoform 2); hydrolase, immunoglobulin domain, nucleus,
protease; 1.15A {Homo sapiens}
Length = 91
Score = 64.3 bits (157), Expect = 6e-13
Identities = 18/105 (17%), Positives = 36/105 (34%), Gaps = 20/105 (19%)
Query: 254 EPQITPSTFYLEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEE 313
+ QI ++ G + L C P W + +P+ +E+
Sbjct: 3 KLQICVEPTSQKLMPGSTLVLQCVAVGSPIPHYQWFKNELPLTHET-------------- 48
Query: 314 GTEIKKSELLIYNSNIDDNGTFVCVAENQAGSTSSNYTIRIVLKE 358
K ++ +++ GT+ C N S S + I++ E
Sbjct: 49 -----KKLYMVPYVDLEHQGTYWCHVYNDRDSQDSK-KVEIIIDE 87
>2ckn_A Basic fibroblast growth factor receptor 1; kinase, transferase,
heparin-binding, nucleotide-binding, immunoglobulin
domain, alternatice splicing; NMR {Mus musculus}
Length = 95
Score = 64.0 bits (156), Expect = 7e-13
Identities = 22/108 (20%), Positives = 43/108 (39%), Gaps = 15/108 (13%)
Query: 247 SIDELACEPQITPSTFYLEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESH 306
++ E A + L + G + L C++ I WL DGV +
Sbjct: 2 TLPEQAQPWGVPVEVESLLVHPGDLLQLRCRLRD-DVQSINWLRDGVQLVES-------- 52
Query: 307 AVYSTEEGTEIKKSELLIYNSNIDDNGTFVCVAENQAGSTSSNYTIRI 354
T I E+ + +S D+G + CV + +GS ++ +++ +
Sbjct: 53 ------NRTRITGEEVEVRDSIPADSGLYACVTSSPSGSDTTYFSVNV 94
>2cr3_A Basic fibroblast growth factor receptor 1; IG fold, FGFR1, BFGF-R,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 99
Score = 64.3 bits (157), Expect = 7e-13
Identities = 19/102 (18%), Positives = 38/102 (37%), Gaps = 15/102 (14%)
Query: 254 EPQITPSTFYLEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEE 313
+ G + L C++ I WL DGV + +
Sbjct: 3 SGSSGVEVESFLVHPGDLLQLRCRLRDDV-QSINWLRDGVQL--------------AESN 47
Query: 314 GTEIKKSELLIYNSNIDDNGTFVCVAENQAGSTSSNYTIRIV 355
T I E+ + +S D+G + CV + +GS ++ +++ +
Sbjct: 48 RTRITGEEVEVQDSVPADSGLYACVTSSPSGSDTTYFSVNVS 89
>3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin
superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus
norvegicus}
Length = 403
Score = 69.9 bits (171), Expect = 9e-13
Identities = 23/124 (18%), Positives = 34/124 (27%), Gaps = 13/124 (10%)
Query: 255 PQITPSTFYLEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEG 314
+ T + G V L C+V P I W + + V G
Sbjct: 122 LRFLSQTESITAFMGDTVLLKCEVIGDPMPTIHWQKNQQDLNP----IPGDSRVVVLPSG 177
Query: 315 TEIKKSELLIYNSNIDDNGTFVCVAENQAGSTSSNYTIRIVL---KEENVEVVTVFPLEY 371
L I D+G + C A N A + + N +L P
Sbjct: 178 A------LQISRLQPGDSGVYRCSARNPASTRTGNEAEVRILSDPGLHRQLYFLQRPSNV 231
Query: 372 VLIV 375
+ I
Sbjct: 232 IAIE 235
Score = 66.0 bits (161), Expect = 2e-11
Identities = 29/115 (25%), Positives = 40/115 (34%), Gaps = 18/115 (15%)
Query: 255 PQITPSTFYLEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEG 314
+ EGK+ L C VS P TWL IQ YS G
Sbjct: 222 LYFLQRPSNVIAIEGKDAVLECCVSGYPPPSFTWLRGEEVIQ-------LRSKKYSLLGG 274
Query: 315 TEIKKSELLIYNSNIDDNGTFVCVAENQAGSTSSNYTI------RIVLKEENVEV 363
S LLI N DD+GT+ CV + + S++ + + N+
Sbjct: 275 -----SNLLISNVTDDDSGTYTCVVTYKNENISASAELTVLVPPWFLNHPSNLYA 324
Score = 64.5 bits (157), Expect = 4e-11
Identities = 22/101 (21%), Positives = 34/101 (33%), Gaps = 13/101 (12%)
Query: 255 PQITPSTFYLEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEG 314
P L E ++ C VS P + W+ +G + S
Sbjct: 313 PWFLNHPSNLYAYESMDIEFECAVSGKPVPTVNWMKNGDVV-------IPSDYFQIVGGS 365
Query: 315 TEIKKSELLIYNSNIDDNGTFVCVAENQAGSTSSNYTIRIV 355
L I D G + CVAEN+AG+ S+ + +
Sbjct: 366 N------LRILGVVKSDEGFYQCVAENEAGNAQSSAQLIVP 400
Score = 54.8 bits (132), Expect = 5e-08
Identities = 16/105 (15%), Positives = 29/105 (27%), Gaps = 7/105 (6%)
Query: 255 PQITPSTFYLEIQEGKNVSLLCKVSAI-PEAKITWLFDGVPIQNESMSASESHAVYSTEE 313
G NV L C + I W DG+ + +
Sbjct: 22 LHFVSEPSDAVTMRGGNVLLNCSAESDRGVPVIKWKKDGLILA----LGMDDRKQQLPNG 77
Query: 314 GTEIKKSELLIYNSNIDDNGTFVCVAENQAGSTSSNYTIRIVLKE 358
I +L + D G + C A + + T ++++
Sbjct: 78 SLLI--QNILHSRHHKPDEGLYQCEASLGDSGSIISRTAKVMVAG 120
>1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A
{Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4
b.1.1.4
Length = 395
Score = 69.9 bits (171), Expect = 9e-13
Identities = 16/91 (17%), Positives = 37/91 (40%), Gaps = 15/91 (16%)
Query: 264 LEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELL 323
+ +++G++V++ CKV+ +P + W + P+ + + L+
Sbjct: 319 IVVKQGQDVTIPCKVTGLPAPNVVWSHNAKPLSGGR---------ATVTDSG------LV 363
Query: 324 IYNSNIDDNGTFVCVAENQAGSTSSNYTIRI 354
I D G + C A N+ G +++
Sbjct: 364 IKGVKNGDKGYYGCRATNEHGDKYFETLVQV 394
Score = 65.7 bits (160), Expect = 2e-11
Identities = 15/105 (14%), Positives = 33/105 (31%), Gaps = 9/105 (8%)
Query: 254 EPQITPSTFYLEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEE 313
EP + + + G + C + P + +G + H S
Sbjct: 212 EPVPQYVSKDMMAKAGDVTMIYCMYGSNPMGYPNYFKNGKDVNGNPEDRITRHNRTSG-- 269
Query: 314 GTEIKKSELLIYNSNIDDNGTFVCVAENQAGSTSSNYTIRIVLKE 358
LL + +D G + C +N G +++++ +
Sbjct: 270 ------KRLLFKTTLPEDEGVYTCEVDNGVGKPQK-HSLKLTVVS 307
Score = 64.5 bits (157), Expect = 4e-11
Identities = 25/118 (21%), Positives = 38/118 (32%), Gaps = 19/118 (16%)
Query: 255 PQITPSTFYLEIQEGKNVSLLCKVSAIPE-AKITWLFDGVPIQNESMSASESHAVYSTEE 313
P + + +E L C + + K +W DG + E +A +E
Sbjct: 7 PVLKDQPAEVLFRENNPTVLECIIEGNDQGVKYSWKKDGKSY-----NWQEHNAALRKDE 61
Query: 314 GTEIKKSELLIYNSNIDDNGTFVCVAENQAGSTSSN-------YTIRIVLKEENVEVV 364
G+ L+ D G + C AE AG SS Y I K +
Sbjct: 62 GS------LVFLRPQASDEGHYQCFAETPAGVASSRVISFRKTYLIASPAKTHEKTPI 113
Score = 56.5 bits (136), Expect = 2e-08
Identities = 18/118 (15%), Positives = 31/118 (26%), Gaps = 10/118 (8%)
Query: 255 PQITPSTFYLEIQEGKNVSLLCKV-SAIPEAKITWLFDGVPIQNESMSASESHAVYSTEE 313
T EG+ L C + +A P+ ITW + + + +
Sbjct: 101 IASPAKTHEKTPIEGRPFQLDCVLPNAYPKPLITWKKRLSGADPNADVTDFDRRITAGPD 160
Query: 314 GTEIKKSELLIYN---SNIDDNGTFVCVAENQAGSTSSNYTIRIVLKEENVEVVTVFP 368
G L ++ D +VC A+N A +
Sbjct: 161 GN------LYFTIVTKEDVSDIYKYVCTAKNAAVDEEVVLVEYEIKGVTKDNSGYKGE 212
>2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor
tyrosine kinase, growth factor cytoki dimerization,
transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A*
Length = 524
Score = 70.1 bits (171), Expect = 1e-12
Identities = 23/104 (22%), Positives = 47/104 (45%), Gaps = 6/104 (5%)
Query: 255 PQITPSTFYLEIQEGKNVSLLCKVSAIPE-AKITWLFDGVPIQNESMSASESHAVYSTEE 313
P ++ S ++EG+ ++ C + + TW + + + S H ++ E
Sbjct: 212 PVVSVSKASYLLREGEEFTVTCTIKDVSSSVYSTWKRENSQTKLQEKYNSWHHGDFNYER 271
Query: 314 GTEIKKSELLIYNSNIDDNGTFVCVAENQAGSTSSNYTIRIVLK 357
+ L I ++ ++D+G F+C A N GS + T+ +V K
Sbjct: 272 Q-----ATLTISSARVNDSGVFMCYANNTFGSANVTTTLEVVDK 310
Score = 68.9 bits (168), Expect = 3e-12
Identities = 26/102 (25%), Positives = 32/102 (31%), Gaps = 8/102 (7%)
Query: 255 PQITPSTFYLEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEG 314
P+I N L C + PE I W F Q S S G
Sbjct: 413 PEIL------TYDRLVNGMLQCVAAGFPEPTIDWYFCPGTEQRCSASVLPVDVQTLNSSG 466
Query: 315 TEIKK--SELLIYNSNIDDNGTFVCVAENQAGSTSSNYTIRI 354
K + I +S NGT C A N G TS+ +
Sbjct: 467 PPFGKLVVQSSIDSSAFKHNGTVECKAYNDVGKTSAYFNFAF 508
Score = 67.8 bits (165), Expect = 5e-12
Identities = 18/120 (15%), Positives = 39/120 (32%), Gaps = 15/120 (12%)
Query: 255 PQITPSTFY---LEIQEGKNVSLLCKVSAIPE-AKITWLFDGVPIQNESMSASESHAVYS 310
I + + +G+NV L+ + A P+ W++ + S
Sbjct: 311 GFINIFPMINTTVFVNDGENVDLIVEYEAFPKPEHQQWIYMNRTFTD-----KWEDYPKS 365
Query: 311 TEEGTEIKKSELLIYNSNIDDNGTFVCVAENQAGSTSSNYTI------RIVLKEENVEVV 364
E SEL + + GT+ + N + + + + I+ + V +
Sbjct: 366 ENESNIRYVSELHLTRLKGTEGGTYTFLVSNSDVNAAIAFNVYVNTKPEILTYDRLVNGM 425
Score = 54.3 bits (130), Expect = 9e-08
Identities = 17/113 (15%), Positives = 40/113 (35%), Gaps = 25/113 (22%)
Query: 255 PQITPSTFYLEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEG 314
P I P L ++ G + LLC + W F+ + NE+
Sbjct: 37 PSIHPGKSDLIVRVGDEIRLLCTD----PGFVKWTFEILDETNEN--------------- 77
Query: 315 TEIKKSELLIYNSNIDDNGTFVCVAENQAGSTSSNYTI---RIVLKEENVEVV 364
K++E + + + G + C ++ ++ + ++ L + ++
Sbjct: 78 ---KQNEWITEKAEATNTGKYTCTNKHGLSNSIYVFVRDPAKLFLVDRSLYGK 127
Score = 47.7 bits (113), Expect = 1e-05
Identities = 17/123 (13%), Positives = 39/123 (31%), Gaps = 14/123 (11%)
Query: 255 PQITPSTFYLEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEG 314
++ L +E + + C ++ PE L + + + G
Sbjct: 115 AKLFLVDRSLYGKEDNDTLVRCPLT-DPEVTNYSLKGC----QGKPLPKDLRFIPDPKAG 169
Query: 315 TEIKKSELLIYN-SNIDDNGTFVCVAENQAGS-TSSNYTIRIVLKEENVEVVTVFPLEYV 372
++I + C + + S S + +++ + V VV+V Y+
Sbjct: 170 -------IMIKSVKRAYHRLCLHCSVDQEGKSVLSEKFILKVRPAFKAVPVVSVSKASYL 222
Query: 373 LIV 375
L
Sbjct: 223 LRE 225
>3mtr_A N-CAM-1, NCAM-1, neural cell adhesion molecule 1; immunoglobulin
domain, fibronectin type III repeat, CE adhesion; 1.80A
{Homo sapiens}
Length = 215
Score = 66.8 bits (163), Expect = 1e-12
Identities = 26/113 (23%), Positives = 45/113 (39%), Gaps = 11/113 (9%)
Query: 255 PQIT-PSTFYLEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEE 313
P++ P Y EG V++ C+V A P A I+W DG + S +++
Sbjct: 20 PKLQGPVAVY--TWEGNQVNITCEVFAYPSATISWFRDGQLLP------SSNYSNIKIYN 71
Query: 314 GTEIKKSELLIYNSNIDDNGTFVCVAENQAGSTSSNYTIRIVLKEENVEVVTV 366
S L + + +D G + C A N+ G S + + + + V
Sbjct: 72 TPS--ASYLEVTPDSENDFGNYNCTAVNRIGQESLEFILVQADTPSSPSIDQV 122
>1nn8_R CD155 antigen, poliovirus receptor; icosahedral virus,
picornavirus, virus/receptor complex; 15.00A {Homo
sapiens} SCOP: i.6.1.1 PDB: 1dgi_R
Length = 302
Score = 68.2 bits (166), Expect = 1e-12
Identities = 23/130 (17%), Positives = 42/130 (32%), Gaps = 8/130 (6%)
Query: 255 PQITPSTFYLEIQEGKNVSLLCKV-SAIPEAKITWLFDGVPIQNESMSASESHAVYSTEE 313
PQ T +++ C P A+ITW D + N S V
Sbjct: 118 PQNTAEVQKVQLTGEPVPMARCVSTGGRPPAQITWHSDLGGMPNTS-------QVPGFLS 170
Query: 314 GTEIKKSELLIYNSNIDDNGTFVCVAENQAGSTSSNYTIRIVLKEENVEVVTVFPLEYVL 373
GT S ++ S+ D C E+++ T+ + + ++ + + L
Sbjct: 171 GTVTVTSLWILVPSSQVDGKNVTCKVEHESFEKPQLLTVNLTVYYPPEVSISGYDNNWYL 230
Query: 374 IVSGIISVCS 383
+ C
Sbjct: 231 GQNEATLTCD 240
Score = 61.3 bits (148), Expect = 3e-10
Identities = 17/104 (16%), Positives = 31/104 (29%), Gaps = 18/104 (17%)
Query: 252 ACEPQITPSTFYLEIQEGKNVSLLCKVSAIPEA-KITWLFDGVPIQNESMSASESHAVYS 310
E I+ +L C + PE W P+
Sbjct: 216 PPEVSISGYD-NNWYLGQNEATLTCDARSNPEPTGYNWSTTMGPLP-------------- 260
Query: 311 TEEGTEIKKSELLIYNSNIDDNGTFVCVAENQAGSTSSNYTIRI 354
+ ++LLI + N T +C N G+ + T+++
Sbjct: 261 --PFAVAQGAQLLIRPVDKPINTTLICNVTNALGARQAELTVQV 302
Score = 45.9 bits (108), Expect = 3e-05
Identities = 19/106 (17%), Positives = 38/106 (35%), Gaps = 13/106 (12%)
Query: 264 LEIQEGKNVSLLCKVSAIPE-----AKITWLFDGVPIQ--------NESMSASESHAVYS 310
+ G +V+L C + +++TW G S S S+ +
Sbjct: 10 VPGFLGDSVTLPCYLQVPNMEVTHVSQLTWARHGESGSMAVFHQTQGPSYSESKRLEFVA 69
Query: 311 TEEGTEIKKSELLIYNSNIDDNGTFVCVAENQAGSTSSNYTIRIVL 356
G E++ + L ++ ++D G + C+ + S VL
Sbjct: 70 ARLGAELRNASLRMFGLRVEDEGNYTCLFVTFPQGSRSVDIWLRVL 115
>1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus
gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB:
2om5_A
Length = 382
Score = 68.7 bits (168), Expect = 2e-12
Identities = 22/100 (22%), Positives = 40/100 (40%), Gaps = 14/100 (14%)
Query: 255 PQITPSTFYLEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEG 314
P E G ++ C S P + WL DG P+ +++
Sbjct: 295 PDWLDVITDTEADIGSDLRWSCVASGKPRPAVRWLRDGQPL--------------ASQNR 340
Query: 315 TEIKKSELLIYNSNIDDNGTFVCVAENQAGSTSSNYTIRI 354
E+ EL ++D+G + CVAEN+ G+ ++ + +
Sbjct: 341 IEVSGGELRFSKLVLEDSGMYQCVAENKHGTVYASAELTV 380
Score = 62.6 bits (152), Expect = 2e-10
Identities = 28/127 (22%), Positives = 45/127 (35%), Gaps = 19/127 (14%)
Query: 255 PQIT---PSTFYLEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYST 311
P T + E + V+L C+ A P A W +G ++ + Y
Sbjct: 5 PVFEEQPAHTLFPEGSAEEKVTLTCRARANPPATYRWKMNGTELK------MGPDSRYRL 58
Query: 312 EEGTEIKKSELLIYNS-NIDDNGTFVCVAENQAGSTSSNYTIRIVLKEENVEVVTVFPLE 370
G L+I N D G++ CVA N G+ S L+ ++ + +
Sbjct: 59 VAGD------LVISNPVKAKDAGSYQCVATNARGTVVSR---EASLRFGFLQEFSAEERD 109
Query: 371 YVLIVSG 377
V I G
Sbjct: 110 PVKITEG 116
Score = 54.9 bits (132), Expect = 5e-08
Identities = 21/101 (20%), Positives = 32/101 (31%), Gaps = 16/101 (15%)
Query: 255 PQITPSTFYLEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEG 314
G+ V+L C P +I W ++ +S+
Sbjct: 208 SIKAKFPADTYALTGQMVTLECFAFGNPVPQIKWRKLDGSQTSKWLSSEPL--------- 258
Query: 315 TEIKKSELLIYNSNIDDNGTFVCVAENQAGSTSSNYTIRIV 355
L I N + +D GT+ C AEN G + I I
Sbjct: 259 -------LHIQNVDFEDEGTYECEAENIKGRDTYQGRIIIH 292
Score = 52.9 bits (127), Expect = 2e-07
Identities = 19/112 (16%), Positives = 34/112 (30%), Gaps = 15/112 (13%)
Query: 264 LEIQEGKNVSLLCKV-SAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSEL 322
++I EG V C P WL + P + + S G L
Sbjct: 111 VKITEGWGVMFTCSPPPHYPALSYRWLLNEFPNFIPA----DGRRFVSQTTGN------L 160
Query: 323 LIYNSNIDDNGTFVCVAENQAGSTS----SNYTIRIVLKEENVEVVTVFPLE 370
I + D G + C A + + S ++ + E+ + +
Sbjct: 161 YIAKTEASDLGNYSCFATSHIDFITKSVFSKFSQLSLAAEDARQYAPSIKAK 212
>2dlt_A Myosin binding protein C, fast-type; IG-like domain, mybpc2,
structural genomics, NPPSFA; NMR {Mus musculus}
Length = 106
Score = 63.2 bits (154), Expect = 2e-12
Identities = 17/92 (18%), Positives = 36/92 (39%), Gaps = 11/92 (11%)
Query: 264 LEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELL 323
L ++ + C+VS + W +GV ++ S + + G + +L+
Sbjct: 18 LTVKAAEQAVFKCEVSD-EKVTGKWYKNGVEVR-------PSKRITISHVG---RFHKLV 66
Query: 324 IYNSNIDDNGTFVCVAENQAGSTSSNYTIRIV 355
I + +D G + V + A S S+ +
Sbjct: 67 IDDVRPEDEGDYTFVPDGYALSLSAKLNFLEI 98
>3rbs_A Myomesin-1; immunoglobulin C-SET domain, contractIle protein; 1.85A
{Homo sapiens}
Length = 207
Score = 65.7 bits (160), Expect = 2e-12
Identities = 21/89 (23%), Positives = 33/89 (37%), Gaps = 13/89 (14%)
Query: 265 EIQEGKNVSLLCKVSAI-PEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELL 323
E+ NV L CKV+ I E I W D I + + ++G LL
Sbjct: 127 EVTGECNVLLKCKVANIKKETHIVWYKDEREISVDEK--------HDFKDGI----CTLL 174
Query: 324 IYNSNIDDNGTFVCVAENQAGSTSSNYTI 352
I + D G + + ++ G S +
Sbjct: 175 ITEFSKKDAGIYEVILKDDRGKDKSRLKL 203
Score = 63.8 bits (155), Expect = 1e-11
Identities = 14/86 (16%), Positives = 31/86 (36%), Gaps = 9/86 (10%)
Query: 264 LEIQEGKNVSLLCKVSAI-PEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSEL 322
+EI E V + + AK+ ++F+ I + ++ I E+
Sbjct: 12 VEILEKGQVRFWMQAEKLSGNAKVNYIFNEKEIFE-----GPKYKMHIDRNTGII---EM 63
Query: 323 LIYNSNIDDNGTFVCVAENQAGSTSS 348
+ +D GT+ ++ + S
Sbjct: 64 FMEKLQDEDEGTYTFQLQDGKATNHS 89
>3jqh_A C-type lectin domain family 4 member M; DC-signr, four-helix
bundle, oligomerization domain, alternative splicing,
calcium, cell membrane; 2.20A {Homo sapiens}
Length = 167
Score = 64.4 bits (158), Expect = 3e-12
Identities = 18/137 (13%), Positives = 37/137 (27%), Gaps = 16/137 (11%)
Query: 74 LVNLQKIYLSRCRISVIDSKAFRGLTNLVDLDFSHNVLQTVPSDTFPDYPSLMKLTLSGN 133
L K+ ++ + A L L + L + + P KL
Sbjct: 3 LPEKSKLQEIYQELTRL-KAAVGELPEKSKLQEIYQELTRLK-AAVGELPEKSKLQEIYQ 60
Query: 134 PIKQIKTGAFQPLSYLVTLELSKCGIEVIEDAAFVGLDSLEWLKLDNNKITTISGSNILP 193
+ ++K + L L+ + + AA L L+ ++T L
Sbjct: 61 ELTRLKAAVGE-LPEKSKLQEIYQELTRL-KAAVGELPEKSKLQEIYQELTE------LK 112
Query: 194 ------TGLHGIDLHHN 204
+ +
Sbjct: 113 AAVGELPEKSKLQEIYQ 129
Score = 55.2 bits (134), Expect = 5e-09
Identities = 19/138 (13%), Positives = 33/138 (23%), Gaps = 30/138 (21%)
Query: 49 PNTQVLDYTGNNLKTLHNEKFQKMGLVNLQKIYLSRCRISVIDSKAFRGLTNLVDLDFSH 108
P L L L + L K+ ++ + A L L +
Sbjct: 50 PEKSKLQEIYQELTRLKAAVGE---LPEKSKLQEIYQELTRL-KAAVGELPEKSKLQEIY 105
Query: 109 NVLQTVPSDTFPDYPSLMKLTLSGNPIKQIKTGAFQPLSYLVTLELSKCGIEVIEDAAFV 168
L + + P KL + Q+K AA
Sbjct: 106 QELTELK-AAVGELPEKSKLQEIYQELTQLK-------------------------AAVG 139
Query: 169 GLDSLEWLKLDNNKITTI 186
L + ++T +
Sbjct: 140 ELPDQSKQQQIYQELTDL 157
>3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor
protein tyrosine phosphatase; HET: NAG; 2.00A {Mus
musculus} PDB: 3jxa_A*
Length = 384
Score = 67.9 bits (166), Expect = 3e-12
Identities = 22/94 (23%), Positives = 42/94 (44%), Gaps = 14/94 (14%)
Query: 264 LEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELL 323
+ + ++V CK + P+ WL +G P+ T + +I++ L
Sbjct: 305 IHVAMEESVFWECKANGRPKPTYRWLKNGDPL--------------LTRDRIQIEQGTLN 350
Query: 324 IYNSNIDDNGTFVCVAENQAGSTSSNYTIRIVLK 357
I N+ D G + CVAEN+ G S+ + ++ +
Sbjct: 351 ITIVNLSDAGMYQCVAENKHGVIFSSAELSVIAE 384
Score = 63.3 bits (154), Expect = 9e-11
Identities = 27/99 (27%), Positives = 37/99 (37%), Gaps = 16/99 (16%)
Query: 255 PQIT---PSTFYLEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYST 311
P + E K V L C+V P+ I W +G + YS
Sbjct: 6 PVFVQEPSHVMFPLDSEEKKVKLSCEVKGNPKPHIRWKLNGTDVD------IGMDFRYSV 59
Query: 312 EEGTEIKKSELLIYNSN-IDDNGTFVCVAENQAGSTSSN 349
+G+ LLI N N D GT+ C+A N G+ S
Sbjct: 60 VDGS------LLINNPNKTQDAGTYQCIATNSFGTIVSR 92
Score = 58.7 bits (142), Expect = 3e-09
Identities = 22/101 (21%), Positives = 33/101 (32%), Gaps = 15/101 (14%)
Query: 255 PQITPSTFYLEIQEGKNVSLLCKVSAIPEAKITWLF-DGVPIQNESMSASESHAVYSTEE 313
+ ++G V L C P I W DG PI ++ +
Sbjct: 206 KIEVQFPETVPAEKGTTVKLECFALGNPVPTILWRRADGKPIARKARRHKSNG------- 258
Query: 314 GTEIKKSELLIYNSNIDDNGTFVCVAENQAGSTSSNYTIRI 354
L I N +D G++ CVAEN G + +
Sbjct: 259 -------ILEIPNFQQEDAGSYECVAENSRGKNVAKGQLTF 292
Score = 54.1 bits (130), Expect = 9e-08
Identities = 18/86 (20%), Positives = 29/86 (33%), Gaps = 13/86 (15%)
Query: 264 LEIQEGKNVSLLCKV-SAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSEL 322
+ ++ G+ + LLC E W+F+ P ++ S E G L
Sbjct: 112 VSVRRGQGMVLLCGPPPHSGELSYAWIFNEYPS------YQDNRRFVSQETGN------L 159
Query: 323 LIYNSNIDDNGTFVCVAENQAGSTSS 348
I D G + CV N +
Sbjct: 160 YIAKVEKSDVGNYTCVVTNTVTNHKV 185
>3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical
bundle cytokine, CY receptor complex, extracellular
complex; HET: NAG; 4.30A {Homo sapiens}
Length = 423
Score = 68.2 bits (166), Expect = 4e-12
Identities = 12/100 (12%), Positives = 33/100 (33%), Gaps = 11/100 (11%)
Query: 255 PQITPSTFYLEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEG 314
+E+ +++L V A W+F + + ++ V
Sbjct: 49 SGTVYEAAAVEVDVSASITLQVLVDAPGNISCLWVFKHSSLNCQPHFDLQNRGV------ 102
Query: 315 TEIKKSELLIYNSNIDDNGTFVCVAENQAGSTSSNYTIRI 354
++I G ++ +++A + + +T+ I
Sbjct: 103 -----VSMVILKMTETQAGEYLLFIQSEATNYTILFTVSI 137
Score = 64.3 bits (156), Expect = 6e-11
Identities = 16/100 (16%), Positives = 32/100 (32%), Gaps = 14/100 (14%)
Query: 255 PQITPSTFYLEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEG 314
T S+ EI + + + A P+ + TW F E +
Sbjct: 327 INATNSSEDYEIDQYEEFCFSVRFKAYPQIRCTWTFSRKSFPCEQKGLDNGY-------- 378
Query: 315 TEIKKSELLIYNSNIDDNGTFVCVAENQAGSTSSNYTIRI 354
+ + ++ G ++ AEN + +T+ I
Sbjct: 379 ------SISKFCNHKHQPGEYIFHAENDDAQFTKMFTLNI 412
Score = 62.8 bits (152), Expect = 2e-10
Identities = 18/115 (15%), Positives = 41/115 (35%), Gaps = 12/115 (10%)
Query: 255 PQITPSTFYLEIQEGKNVSLLCK-VSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEE 313
PQ T +L + G+ + + CK V +TW + ++ + ++ +
Sbjct: 230 PQTTLPQLFL--KVGEPLWIRCKAVHVNHGFGLTWELENKALEEGNYFEMSTY----STN 283
Query: 314 GTEIKKSELLIYNSNIDDNGTFVCVAENQAGSTSSNY-----TIRIVLKEENVEV 363
T I+ + + +D G + C + ++ I E+ E+
Sbjct: 284 RTMIRILFAFVSSVARNDTGYYTCSSSKHPSQSALVTIVEKGFINATNSSEDYEI 338
Score = 47.0 bits (111), Expect = 2e-05
Identities = 16/101 (15%), Positives = 32/101 (31%), Gaps = 15/101 (14%)
Query: 255 PQITPSTFYLEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEG 314
T Y E + +L+C ++PE + W+ ++ E
Sbjct: 141 LLYTLRRPYFRKMENQ-DALVCISESVPEPIVEWVLCDSQGESC-----------KEESP 188
Query: 315 TEIKKSELLIYNSNIDDNGTFVCVAENQAGSTSSNYTIRIV 355
+KK E +++ C A N+ G + +
Sbjct: 189 AVVKKEEKVLHE---LFGTDIRCCARNELGRECTRLFTIDL 226
>1pd6_A Cardiac MYBP-C;, myosin-binding protein C, cardiac-type, domain C2;
IG domain, structural protein; NMR {Homo sapiens} SCOP:
b.1.1.4
Length = 104
Score = 62.4 bits (152), Expect = 4e-12
Identities = 19/83 (22%), Positives = 36/83 (43%), Gaps = 10/83 (12%)
Query: 265 EIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLI 324
++ +G + L +++ +A++ WL +G IQ S + Y E K L I
Sbjct: 27 QVSKGHKIRLTVELAD-HDAEVKWLKNGQEIQ-------MSGSKYIFES--IGAKRTLTI 76
Query: 325 YNSNIDDNGTFVCVAENQAGSTS 347
++ D+ + CV + ST
Sbjct: 77 SQCSLADDAAYQCVVGGEKCSTE 99
>2jll_A NCAM2, neural cell adhesion molecule 2; immunoglobulin domain,
immunoglobulin superfamily, transmembrane,
phosphoprotein, membrane, glycoprotein; HET: NAG; 2.30A
{Homo sapiens} PDB: 2xyc_A* 2jlk_A* 2doc_A
Length = 389
Score = 67.5 bits (165), Expect = 4e-12
Identities = 23/101 (22%), Positives = 43/101 (42%), Gaps = 8/101 (7%)
Query: 255 PQITPSTFYLEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEG 314
P+ + EG +++ C V + P A I W D + + ++ + + YST
Sbjct: 101 PKFISNQTIYYSWEGNPINISCDVKSNPPASIHWRRDKLVLPAKN---TTNLKTYSTG-- 155
Query: 315 TEIKKSELLIYNSNIDDNGTFVCVAENQAGSTSSNYTIRIV 355
+K L I ++ +D G + C A N G+ Y + +
Sbjct: 156 ---RKMILEIAPTSDNDFGRYNCTATNHIGTRFQEYILALA 193
Score = 65.2 bits (159), Expect = 2e-11
Identities = 19/117 (16%), Positives = 36/117 (30%), Gaps = 10/117 (8%)
Query: 254 EPQITPSTFYLEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEE 313
+P I E V+L+C P +ITW S + +
Sbjct: 1 QPHIIQLKN-ETTYENGQVTLVCDAEGEPIPEITWKRAVDGFTFTEGDKSLDGRIEVKGQ 59
Query: 314 GTEIKKSELLIYNSNIDDNGTFVCVAENQAGSTSSNYTI------RIVLKEENVEVV 364
S L I + + D+G + C A ++ G + + + + +
Sbjct: 60 HG---SSSLHIKDVKLSDSGRYDCEAASRIGGHQKSMYLDIEYAPKFISNQTIYYSW 113
>2cry_A KIN of IRRE-like protein 3; IG fold, KIN of irregular chiasm-like
protein 3, nephrin- like 2, structural genomics, NPPSFA;
NMR {Homo sapiens} SCOP: b.1.1.1
Length = 122
Score = 62.6 bits (152), Expect = 4e-12
Identities = 22/103 (21%), Positives = 36/103 (34%), Gaps = 9/103 (8%)
Query: 255 PQIT-PSTFYLEIQEGKNVSLLCKVSAIPEA-KITWLFDGVPIQNESMSASESHAVYSTE 312
P I+ T + G+ + C + + P +I W + + S + T
Sbjct: 15 PIISSTQTQH--ALHGEKGQIKCFIRSTPPPDRIAWSWKENVL----ESGTSGRYTVETI 68
Query: 313 EGTEIKKSELLIYNSNIDDNGT-FVCVAENQAGSTSSNYTIRI 354
E S L I N D T + C A N GS + ++
Sbjct: 69 STEEGVISTLTISNIVRADFQTIYNCTAWNSFGSDTEIIRLKE 111
>2eo1_A OBSCN protein, cDNA FLJ14124 FIS, clone mamma1002498;
beta-sandwich, IG-fold, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 102
Score = 62.0 bits (151), Expect = 5e-12
Identities = 18/93 (19%), Positives = 36/93 (38%), Gaps = 11/93 (11%)
Query: 255 PQITPSTFYLEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEG 314
+ P+ ++ + G + +L C+V+ + ++TW DG + S V G
Sbjct: 12 AKEQPAHREVQAEAGASATLSCEVAQ-AQTEVTWYKDGKKLS-------SSSKVRVEAVG 63
Query: 315 TEIKKSELLIYNSNIDDNGTFVCVAENQAGSTS 347
L++ + + G + C A Q S
Sbjct: 64 ---CTRRLVVQQAGQAEAGEYSCEAGGQQLSFR 93
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET:
NAG; 2.50A {Mus musculus}
Length = 312
Score = 66.5 bits (162), Expect = 5e-12
Identities = 32/168 (19%), Positives = 55/168 (32%), Gaps = 14/168 (8%)
Query: 48 DPNTQVLDYTGNNLKTLHNEKFQKMGLVNLQKIYLSRCRIS----VIDSKAFRGLTNLVD 103
P +VL + E+ + L + LS +I + L
Sbjct: 148 KPGLKVLSIAQAHSLNFSCEQVRV--FPALSTLDLSDNPELGERGLISALCPLKFPTLQV 205
Query: 104 LDFSHNVLQTVP---SDTFPDYPSLMKLTLSGNPIKQI-KTGAFQPLSYLVTLELSKCGI 159
L + ++T S L L LS N ++ + S L +L LS G+
Sbjct: 206 LALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGL 265
Query: 160 EVIEDAAFVGLDSLEWLKLDNNKITTISGSNILPTGLHGIDLHHNPWT 207
+ + L L L N++ + LP + + L NP+
Sbjct: 266 KQVPKGLPA---KLSVLDLSYNRLDRNPSPDELPQ-VGNLSLKGNPFL 309
Score = 63.8 bits (155), Expect = 5e-11
Identities = 26/145 (17%), Positives = 39/145 (26%), Gaps = 31/145 (21%)
Query: 42 TVVEGMDPNTQVLDYTGNNLKTLHNEKFQ-KMGLVNLQKIYLSRCRIS-VIDSKAFRGLT 99
+ P QVL ++T V LQ + LS + + + +
Sbjct: 194 ALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPS 253
Query: 100 NLVDLDFSHNVLQTVPSDTFPDYPSLMKLTLSGNPIKQIKTGAFQPLSYLVTLELSKCGI 159
L L+ S L+ VP L L LS N + + P
Sbjct: 254 QLNSLNLSFTGLKQVPKGLP---AKLSVLDLSYNRLDRN------PS------------- 291
Query: 160 EVIEDAAFVGLDSLEWLKLDNNKIT 184
L + L L N
Sbjct: 292 -------PDELPQVGNLSLKGNPFL 309
Score = 62.2 bits (151), Expect = 2e-10
Identities = 29/166 (17%), Positives = 48/166 (28%), Gaps = 13/166 (7%)
Query: 52 QVLDYTGNNLKTLHNEKFQKMGLVNLQKIYLSRCRISVIDSKAFR----GLTNLVDLDFS 107
Q L + + +L + L + D+ L L +
Sbjct: 98 QELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIA 157
Query: 108 HNVLQTVPSDTFPDYPSLMKLTLSGNPIKQ----IKTGAFQPLSYLVTLELSKCGIEVIE 163
+ +P+L L LS NP I L L L G+E
Sbjct: 158 QAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPS 217
Query: 164 D---AAFVGLDSLEWLKLDNNKITTI--SGSNILPTGLHGIDLHHN 204
A L+ L L +N + + S P+ L+ ++L
Sbjct: 218 GVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFT 263
>2nzi_A Titin; IG-domain, FNIII-domain, transferase; 2.90A {Homo sapiens}
Length = 305
Score = 66.3 bits (162), Expect = 6e-12
Identities = 21/85 (24%), Positives = 36/85 (42%), Gaps = 8/85 (9%)
Query: 264 LEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELL 323
L ++ N +L+CKV+ P+ + W G I + + + + G +L+
Sbjct: 14 LNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIAD----GLKYRIQEFKGGY----HQLI 65
Query: 324 IYNSNIDDNGTFVCVAENQAGSTSS 348
I + DD + A NQ GS S
Sbjct: 66 IASVTDDDATVYQVRATNQGGSVSG 90
Score = 65.6 bits (160), Expect = 9e-12
Identities = 21/106 (19%), Positives = 34/106 (32%), Gaps = 14/106 (13%)
Query: 255 PQITPSTFY-----LEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVY 309
+I + G+ VS+ S P+ ITW I N + + V
Sbjct: 100 AKIHLPKTLEGMGAVHALRGEVVSIKIPFSGKPDPVITWQKGQDLIDN-----NGHYQVI 154
Query: 310 STEEGTEIKKSELLIYNSNIDDNGTFVCVAENQAGSTSSNYTIRIV 355
T T S + D G +V A+N+ G + +
Sbjct: 155 VTRSFT----SLVFPNGVERKDAGFYVVCAKNRFGIDQKTVELDVA 196
>2dav_A SLOW MYBP-C, myosin-binding protein C, SLOW-type; IG domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
b.1.1.4
Length = 126
Score = 62.3 bits (151), Expect = 7e-12
Identities = 16/108 (14%), Positives = 38/108 (35%), Gaps = 4/108 (3%)
Query: 264 LEIQEGKNVSLLCKVSAIPEA---KITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKS 320
++ G++++ + KV A I W F G + S + + E + +
Sbjct: 17 GTVKVGEDITFIAKVKAEDLLRKPTIKW-FKGKWMDLASKAGKHLQLKETFERHSRVYTF 75
Query: 321 ELLIYNSNIDDNGTFVCVAENQAGSTSSNYTIRIVLKEENVEVVTVFP 368
E+ I + + G + C + S ++ + + + P
Sbjct: 76 EMQIIKAKDNFAGNYRCEVTYKDKFDSCSFDLEVHESTGTTPNIDSGP 123
>1waa_A Titin; metal binding protein, calmodulin-binding, cytoskeleton,
immunoglobulin domain, muscle protein, phosphorylation,
repeat; 1.80A {Homo sapiens} PDB: 1waa_E 1waa_F 1tit_A
1tiu_A 2rq8_A
Length = 93
Score = 61.2 bits (149), Expect = 7e-12
Identities = 17/82 (20%), Positives = 30/82 (36%), Gaps = 11/82 (13%)
Query: 264 LEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELL 323
+E+ G+ ++S P+ W G P+ S E+G KK L+
Sbjct: 15 VEVFVGETAHFEIELSE-PDVHGQWKLKGQPLA-------ASPDCEIIEDG---KKHILI 63
Query: 324 IYNSNIDDNGTFVCVAENQAGS 345
++N + G A N +
Sbjct: 64 LHNCQLGMTGEVSFQAANTKSA 85
>2o26_X MAST/stem cell growth factor receptor; stem cell factor, receptor
tyrosine kinase, class III, recep ligand complex,
cytokine, 4-helix bundle; HET: NAG FUL MAN NDG; 2.50A
{Mus musculus}
Length = 290
Score = 65.5 bits (159), Expect = 9e-12
Identities = 20/102 (19%), Positives = 45/102 (44%), Gaps = 4/102 (3%)
Query: 255 PQITPSTFYLEIQEGKNVSLLCKVSAIPE-AKITWLFDGVPIQNESMSASESHAVYSTEE 313
P ++ +++G +++C + + WL Q+ + S + +
Sbjct: 189 PVVSVPETSHLLKKGDTFTVVCTIKDVSTSVNSMWLKMNPQPQHIAQVKHNS---WHRGD 245
Query: 314 GTEIKKSELLIYNSNIDDNGTFVCVAENQAGSTSSNYTIRIV 355
++ L I ++ +DD+G F+C A N GS + T+++V
Sbjct: 246 FNYERQETLTISSARVDDSGVFMCYANNTFGSANVTTTLKVV 287
Score = 52.0 bits (124), Expect = 2e-07
Identities = 16/112 (14%), Positives = 41/112 (36%), Gaps = 14/112 (12%)
Query: 266 IQEGKNVSLLCKVSAIPEAKITWL-FDGVPIQNESMSASESHAVYSTEEGTEIKKSELLI 324
+E + + C ++ ++ + + DG + ++ V + + G IK +
Sbjct: 103 GKEDSDALVRCPLTDPQVSQYSLIECDGKSLP------TDLTFVPNPKAGITIKNVK--- 153
Query: 325 YNSNIDDNGTFVCVAENQAGS-TSSNYTIRIVLKEENVEVVTVFPLEYVLIV 375
C A+ S +T+++ + + VV+V ++L
Sbjct: 154 ---RAYHRLCVRCAAQRDGTWLHSDKFTLKVREAIKAIPVVSVPETSHLLKK 202
Score = 51.3 bits (122), Expect = 5e-07
Identities = 19/96 (19%), Positives = 31/96 (32%), Gaps = 21/96 (21%)
Query: 255 PQITPSTFYLEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEG 314
P I P+ L ++ G +SL C + W F +
Sbjct: 13 PSIHPAQSELIVEAGDTLSLTCIDPD----FVRWTFKTYFNEM----------------- 51
Query: 315 TEIKKSELLIYNSNIDDNGTFVCVAENQAGSTSSNY 350
E KK+E + + GT+ C N S+ +
Sbjct: 52 VENKKNEWIQEKAEATRTGTYTCSNSNGLTSSIYVF 87
>3oq3_B IFN-alpha/beta binding protein C12R; mousepox virus, moscow strain,
cytokine decoy RE virus/viral protein, type-1
interferon, soluble A/B-IFNR; HET: EPE; 2.10A
{Ectromelia virus}
Length = 329
Score = 66.0 bits (160), Expect = 1e-11
Identities = 21/128 (16%), Positives = 42/128 (32%), Gaps = 17/128 (13%)
Query: 255 PQITPSTFYLEIQEGKNVSLLCKV-SAIPEAKITWLFDGVPIQNESMSASESHAVYSTEE 313
P P T+ L + + L C + A ITW + + +
Sbjct: 129 PSCIPETYELGTHDKYGIDLYCGILYAKHYNNITWYKNNQELIIDGTK------------ 176
Query: 314 GTEIKKSELLIYNSNIDDNGTFVCVAENQAGSTSSNYTIRIVLKEENVEVVTVFPLEYVL 373
L+I+N ++D+G + C ++ + + V+ + L
Sbjct: 177 -YSQSGQNLIIHNPELEDSGRYDCYVHYDDVRIKNDIVVSRCK---ILTVIPSQDHRFKL 232
Query: 374 IVSGIISV 381
I+ I+V
Sbjct: 233 ILDPKINV 240
Score = 53.3 bits (127), Expect = 1e-07
Identities = 15/122 (12%), Positives = 32/122 (26%), Gaps = 10/122 (8%)
Query: 238 LSSVTIKQLSIDELACEPQITPSTFYLEIQEGKNVSLLCKVSAIPEAK----ITWLFDGV 293
+ K L++ + + G+ ++ C + I W
Sbjct: 212 IVVSRCKILTVIPSQDHRFKLILDPKINVTIGEPANITCTAVSTSLLVDDVLIDWENPSG 271
Query: 294 PIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNG-TFVCVAENQAGSTSSNYTI 352
I + I ++ L N + G T+ C N + T+
Sbjct: 272 WIIG-----LDFGVYSILTSSGGITEATLYFENVTEEYIGNTYTCRGHNYYFDKTLTTTV 326
Query: 353 RI 354
+
Sbjct: 327 VL 328
Score = 38.7 bits (89), Expect = 0.006
Identities = 12/91 (13%), Positives = 23/91 (25%), Gaps = 7/91 (7%)
Query: 268 EGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNS 327
G+ S C + + E + + + G L I N
Sbjct: 43 LGEPFSAKCPPIEDSLLSHRYNDKDNVVNWEKIGKTRRPLNRRVKNGD------LWIANY 96
Query: 328 NIDDNGTF-VCVAENQAGSTSSNYTIRIVLK 357
+D+ +C + G + K
Sbjct: 97 TSNDSHRRYLCTVTTKNGDCVQGIVRSHIRK 127
>3s97_C Contactin-1; carbonic anhdyrase like immunoglobulin, cell adhesion
comple adhesion; HET: NAG; 2.30A {Homo sapiens}
Length = 201
Score = 63.4 bits (154), Expect = 1e-11
Identities = 25/101 (24%), Positives = 34/101 (33%), Gaps = 14/101 (13%)
Query: 254 EPQITPSTFYLEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEE 313
I + G+NV+L C P I W P+ S A ST
Sbjct: 113 PADIVVQFKDVYALMGQNVTLECFALGNPVPDIRWRKVLEPMP--------STAEISTSG 164
Query: 314 GTEIKKSELLIYNSNIDDNGTFVCVAENQAGSTSSNYTIRI 354
L I+N ++D G + C AEN G I +
Sbjct: 165 AV------LKIFNIQLEDEGIYECEAENIRGKDKHQARIYV 199
Score = 54.9 bits (132), Expect = 1e-08
Identities = 20/106 (18%), Positives = 37/106 (34%), Gaps = 12/106 (11%)
Query: 253 CEPQITPSTFYLEIQEGKNVSLLCKVSAI--PEAKITWLFDGVPIQNESMSASESHAVYS 310
+P + ++EGK + LLC + WL + P+ ++ + V S
Sbjct: 7 LDPFPPEERPEVRVKEGKGMVLLCDPPYHFPDDLSYRWLLNEFPVF---ITMDKRRFV-S 62
Query: 311 TEEGTEIKKSELLIYNSNIDDNGTFVCVAENQAGSTSSNYTIRIVL 356
G L I N D G + C + + + S ++
Sbjct: 63 QTNGN------LYIANVEASDKGNYSCFVSSPSITKSVFSKFIPLI 102
>2y23_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin-
like; 2.50A {Homo sapiens}
Length = 312
Score = 65.4 bits (159), Expect = 2e-11
Identities = 16/133 (12%), Positives = 40/133 (30%), Gaps = 9/133 (6%)
Query: 241 VTIKQLSIDELACEPQITPSTFYLEIQEGKNVSLLCKV-SAIPEAKITWLFDGVPIQNES 299
+ E S +EI E V + AK+ ++F+ I
Sbjct: 94 LKRLLALSHEHKFPTVPVKSELAVEILEKGQVRFWMQAEKLSGNAKVNYIFNEKEIFE-- 151
Query: 300 MSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCVAENQAGSTSSNYTIRIVLKEE 359
+ ++ E+ + +D GT+ ++ + S + + ++
Sbjct: 152 ---GPKYKMHIDRNT---GIIEMFMEKLQDEDEGTYTFQLQDGKATNHSTVVLVGDVFKK 205
Query: 360 NVEVVTVFPLEYV 372
+ E++
Sbjct: 206 LQKEAEFQRQEWI 218
Score = 65.0 bits (158), Expect = 2e-11
Identities = 18/104 (17%), Positives = 38/104 (36%), Gaps = 11/104 (10%)
Query: 255 PQITPSTFYLEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEG 314
P ++ +++ C P+++ +W D V ++ S V
Sbjct: 4 PFTKEVVVNVDDDGVISLNFECDKMT-PKSEFSWSKDYVSTED-----SPRLEVE----- 52
Query: 315 TEIKKSELLIYNSNIDDNGTFVCVAENQAGSTSSNYTIRIVLKE 358
++ K+++ + +DD G + C + G SS LK
Sbjct: 53 SKGNKTKMTFKDLGMDDLGIYSCDVTDTDGIASSYLIDEEELKR 96
Score = 64.2 bits (156), Expect = 3e-11
Identities = 25/120 (20%), Positives = 38/120 (31%), Gaps = 14/120 (11%)
Query: 234 VPPRLSSVTIKQLSIDELACEPQITPSTFYLEIQEGKNVSLLCKVSAI-PEAKITWLFDG 292
V +L Q P E+ NV L CKV+ I E I W D
Sbjct: 202 VFKKLQKEAEFQRQEWIRKQGPHFVEYL-SWEVTGECNVLLKCKVANIKKETHIVWYKDE 260
Query: 293 VPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCVAENQAGSTSSNYTI 352
I + + ++G LLI + D G + + ++ G S +
Sbjct: 261 REISVDEK--------HDFKDGI----CTLLITEFSKKDAGIYEVILKDDRGKDKSRLKL 308
>1he7_A High affinity nerve growth factor receptor; transferase,
TRK-receptor, strand-swapping; 2.0A {Homo sapiens} SCOP:
b.1.1.4 PDB: 1wwa_X 1www_X
Length = 126
Score = 61.1 bits (148), Expect = 2e-11
Identities = 18/103 (17%), Positives = 34/103 (33%), Gaps = 6/103 (5%)
Query: 255 PQITPSTFYLEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEG 314
P E + + V P + WLF+G + S +E + E
Sbjct: 4 PASVQL---HTAVEMHHWCIPFSVDGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANET- 59
Query: 315 TEIKKSELLIYNSNIDDNGTFVCVAENQAGSTSSNYTIRIVLK 357
++ L + +NG + +A N G S++ +
Sbjct: 60 --VRHGCLRLNQPTHVNNGNYTLLAANPFGQASASIMAAFMDN 100
>2x1w_L Vascular endothelial growth factor receptor 2; hormone-signaling
protein complex, angiogenesis, glycoprotein, HOST-virus
interaction, membrane; HET: NAG BMA; 2.70A {Homo
sapiens} PDB: 2x1x_R*
Length = 213
Score = 63.3 bits (153), Expect = 2e-11
Identities = 17/104 (16%), Positives = 38/104 (36%), Gaps = 5/104 (4%)
Query: 254 EPQITPSTFYLEIQEGKNVSLLCKVSAIPEAK--ITWLFDGVPIQNESMSASESHAVYST 311
+ ++PS +E+ G+ + L C W + Q++ + + +
Sbjct: 106 DVVLSPSH-GIELSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGS 164
Query: 312 EEGTEIKKSELLIYNSNIDDNGTFVCVAENQAGSTSSNYTIRIV 355
E + S L I D G + C A + + ++ +R+
Sbjct: 165 E--MKKFLSTLTIDGVTRSDQGLYTCAASSGLMTKKNSTFVRVH 206
Score = 54.0 bits (129), Expect = 2e-08
Identities = 19/124 (15%), Positives = 38/124 (30%), Gaps = 12/124 (9%)
Query: 254 EPQITPSTFYLEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEE 313
Y+ + K V + C S I ++ + + + +++
Sbjct: 9 SVSDQHGVVYITENKNKTVVIPCLGS-ISNLNVSLCARY---PEKRFVPDGNRISWDSKK 64
Query: 314 GTEIKKSELLIYNSNIDDNGTFVCVAENQAGSTSSNYTIRIVLKEENVEVVTVFPLEYVL 373
G I + I G C A+ S S I +V+ + V + P +
Sbjct: 65 G-------FTIPSYMISYAGMVFCEAKINDESYQSIMYI-VVVVGYRIYDVVLSPSHGIE 116
Query: 374 IVSG 377
+ G
Sbjct: 117 LSVG 120
>2yuz_A Myosin-binding protein C, SLOW-type; immunoglobulin domain,
SLOW-type myosin-binding protein C, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 100
Score = 60.0 bits (146), Expect = 2e-11
Identities = 18/90 (20%), Positives = 38/90 (42%), Gaps = 12/90 (13%)
Query: 264 LEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELL 323
+ GK + L C++S W +G+P+Q ES + ++G + +L+
Sbjct: 17 QTVNLGKEICLKCEISENIP--GKWTKNGLPVQ-------ESDRLKVVQKG---RIHKLV 64
Query: 324 IYNSNIDDNGTFVCVAENQAGSTSSNYTIR 353
I N+ +D G +V + + + +
Sbjct: 65 IANALTEDEGDYVFAPDAYNVTLPAKVHVI 94
>2c5d_C AXL oncogene, tyrosine-protein kinase receptor UFO; signaling
protein/receptor, growth regulation/complex, vitamin
K-dependent protein; HET: NAG; 3.3A {Homo sapiens}
Length = 195
Score = 62.6 bits (152), Expect = 2e-11
Identities = 15/98 (15%), Positives = 34/98 (34%), Gaps = 6/98 (6%)
Query: 254 EPQIT--PSTFYLEIQEGKNVSLLCKVSA-IPEAKITWLFDGVPIQNESMSASESHAVYS 310
E P + G +L C++ ++ WL DG ++ + ++
Sbjct: 2 ESPFVGNPGN--ITGARGLTGTLRCQLQVQGEPPEVHWLRDGQILELADSTQTQVPLGED 59
Query: 311 TEEGTEIKKSELLIYNSNIDDNGTFVCVAENQAGSTSS 348
++ + L I + + D G + C+ + S
Sbjct: 60 EQDDWIVVSQ-LRITSLQLSDTGQYQCLVFLGHQTFVS 96
Score = 61.1 bits (148), Expect = 8e-11
Identities = 19/103 (18%), Positives = 31/103 (30%), Gaps = 18/103 (17%)
Query: 255 PQITPSTFYLEIQEGKNVSLLCKVSAIPE-AKITWLFDGVPIQNESMSASESHAVYSTEE 313
P + +L C+ PE + WL D VP+
Sbjct: 107 PYFLEEPEDRTVAANTPFNLSCQAQGPPEPVDLLWLQDAVPLATAP-------------- 152
Query: 314 GTEIKKSELLIYNSNIDDNGTFVCVAENQAGSTSSNYTIRIVL 356
+ ++ ++ +F C A N G T+S VL
Sbjct: 153 ---GHGPQRSLHVPGLNKTSSFSCEAHNAKGVTTSRTATITVL 192
>1x44_A Myosin-binding protein C, SLOW-type; IG-like domain, SLOW-
type/skeletal muscle SLOW-isoform, structural genomics,
NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4
Length = 103
Score = 60.0 bits (146), Expect = 2e-11
Identities = 18/82 (21%), Positives = 27/82 (32%), Gaps = 9/82 (10%)
Query: 264 LEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELL 323
G+ V L C+VS +A + W +G I EG KK L+
Sbjct: 17 TTAYCGERVELECEVSE-DDANVKWFKNGEEIIP-----GPKSRYRIRVEG---KKHILI 67
Query: 324 IYNSNIDDNGTFVCVAENQAGS 345
I + D + + S
Sbjct: 68 IEGATKADAAEYSVMTTGGQSS 89
>3s35_X Vascular endothelial growth factor receptor 2; antibody, KDR, VEGF
receptor, cancer, immune system-transfer complex; HET:
NAG; 2.20A {Homo sapiens} PDB: 3s36_X 3s37_X
Length = 122
Score = 60.5 bits (146), Expect = 2e-11
Identities = 16/102 (15%), Positives = 37/102 (36%), Gaps = 1/102 (0%)
Query: 256 QITPSTFYLEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGT 315
++PS +E+ G+ + L C I + ++ +++ +
Sbjct: 11 VLSPSH-GIELSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEM 69
Query: 316 EIKKSELLIYNSNIDDNGTFVCVAENQAGSTSSNYTIRIVLK 357
+ S L I D G + C A + + ++ +R+ K
Sbjct: 70 KKFLSTLTIDGVTRSDQGLYTCAASSGLMTKKNSTFVRVHEK 111
>1itb_B Type 1 interleukin-1 receptor; immunoglobulin fold, transmembrane,
glycoprotein, signal, complex (immunoglobulin/receptor);
2.50A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB:
1ira_Y* 4dep_B* 1g0y_R
Length = 315
Score = 64.7 bits (157), Expect = 2e-11
Identities = 17/95 (17%), Positives = 32/95 (33%), Gaps = 3/95 (3%)
Query: 257 ITPSTFYLEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTE 316
++P+ +E+ G + L+C V+ W ++G I + E +
Sbjct: 212 VSPANETMEVDLGSQIQLICNVTGQLSDIAYWKWNGSVIDEDDPVLGEDYYSVENPANKR 271
Query: 317 IKKSE--LLIYNSNI-DDNGTFVCVAENQAGSTSS 348
L I F C A+N G ++
Sbjct: 272 RSTLITVLNISEIESRFYKHPFTCFAKNTHGIDAA 306
Score = 55.9 bits (134), Expect = 2e-08
Identities = 15/98 (15%), Positives = 26/98 (26%), Gaps = 19/98 (19%)
Query: 266 IQEGKNVSLLC------KVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKK 319
+ + L+C K K+ W D P+ +++ K
Sbjct: 115 LPVAGDGGLVCPYMEFFKNENNELPKLQWYKDCKPLLLDNIH-------------FSGVK 161
Query: 320 SELLIYNSNIDDNGTFVCVAENQAGSTSSNYTIRIVLK 357
L++ N G + C A T I
Sbjct: 162 DRLIVMNVAEKHRGNYTCHASYTYLGKQYPITRVIEFI 199
Score = 51.3 bits (122), Expect = 5e-07
Identities = 21/123 (17%), Positives = 40/123 (32%), Gaps = 12/123 (9%)
Query: 268 EGKNVSLLCKVSAIPE-AKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYN 326
+ C ++ ITW D ++E + + L
Sbjct: 19 ANEIDVRPCPLNPNEHKGTITWYKDDSKT----PVSTEQASRIHQHKEK------LWFVP 68
Query: 327 SNIDDNGTFVCVAENQAGSTSSNYTIRIVLKEENVEVVTVFPLEYVLIVSGIIS-VCSLV 385
+ ++D+G + CV N + + + V E N+ + L V+G VC +
Sbjct: 69 AKVEDSGHYYCVVRNSSYCLRIKISAKFVENEPNLCYNAQAIFKQKLPVAGDGGLVCPYM 128
Query: 386 LIF 388
F
Sbjct: 129 EFF 131
>3cx2_A Myosin-binding protein C, cardiac-type; protonation states,
actin-binding, cardiomyopathy, cell adhesion, disease
mutation, immunoglobulin domain; 1.30A {Homo sapiens}
PDB: 2v6h_A 2avg_A
Length = 108
Score = 60.0 bits (145), Expect = 2e-11
Identities = 16/95 (16%), Positives = 36/95 (37%), Gaps = 4/95 (4%)
Query: 264 LEIQEGKNVSLLCKVSAIPEAK---ITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKS 320
E+ G +++ +V+ K + W F G + S S + +++
Sbjct: 14 GEVTVGGSITFSARVAGASLLKPPVVKW-FKGKWVDLSSKVGQHLQLHDSYDRASKVYLF 72
Query: 321 ELLIYNSNIDDNGTFVCVAENQAGSTSSNYTIRIV 355
EL I ++ G++ C + SN+ + +
Sbjct: 73 ELHITDAQPAFTGSYRCEVSTKDKFDCSNFNLTVH 107
>2cr6_A KIAA1556 protein, obscurin; IG-fold, immunoglobulin domain,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 115
Score = 60.1 bits (146), Expect = 3e-11
Identities = 17/82 (20%), Positives = 34/82 (41%), Gaps = 9/82 (10%)
Query: 264 LEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELL 323
+++QEG + + C++S + W D P+ +E + + + G L
Sbjct: 23 VDVQEGSSATFRCRISPANYEPVHWFLDKTPLHA-----NELNEI-DAQPGGYHV---LT 73
Query: 324 IYNSNIDDNGTFVCVAENQAGS 345
+ + D+GT A +Q S
Sbjct: 74 LRQLALKDSGTIYFEAGDQRAS 95
>3mjg_X Beta-type platelet-derived growth factor receptor; protein-protein
complex, growth factor-receptor complex, TRA hormone
complex; HET: NDG NAG; 2.30A {Homo sapiens}
Length = 289
Score = 64.3 bits (156), Expect = 3e-11
Identities = 16/104 (15%), Positives = 37/104 (35%), Gaps = 5/104 (4%)
Query: 255 PQITPSTFYLEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEG 314
++ + +++G+N++L+C V W + ++
Sbjct: 182 INVSVNAVQTVVRQGENITLMCIVIGNEVVNFEWTYPRKESGRLVEPVTDFLLDMPYH-- 239
Query: 315 TEIKKSELLIYNSNIDDNGTFVCVAENQAGSTSSNYTIRIVLKE 358
+S L I ++ ++D+GT+ C I I + E
Sbjct: 240 ---IRSILHIPSAELEDSGTYTCNVTESVNDHQDEKAINITVVE 280
Score = 55.1 bits (132), Expect = 2e-08
Identities = 20/120 (16%), Positives = 33/120 (27%), Gaps = 16/120 (13%)
Query: 257 ITPSTFYLEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTE 316
+TP L + L C A + W E A +
Sbjct: 3 VTPPGPELVLNVSSTFVLTCSG----SAPVVWERMSQEPPQEMAKAQDGTFS-------- 50
Query: 317 IKKSELLIYNSNIDDNGTFVCVAENQAGS-TSSNYTIRIVLKEENVEVVTVFPLEYVLIV 375
S L + N D G + C + G T + I + + V + E + +
Sbjct: 51 ---SVLTLTNLTGLDTGEYFCTHNDSRGLETDERKRLYIFVPDPTVGFLPNDAEELFIFL 107
Score = 48.5 bits (115), Expect = 4e-06
Identities = 17/126 (13%), Positives = 44/126 (34%), Gaps = 22/126 (17%)
Query: 259 PSTFYLEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIK 318
++ + E +++ C+V+ P+ +T + Y + G
Sbjct: 100 AEELFIFLTEITEITIPCRVT-DPQLVVTLHEKKGDV--------ALPVPYDHQRGF--- 147
Query: 319 KSELLIYNSNIDDNGTFVCVAENQAGSTSSNYTIRIVLKEENVEVVTVFPLEYVLIVSGI 378
S I ++ +++C S+ L+ ++ V+V ++ V+
Sbjct: 148 --------SGIFEDRSYICKTTIGDREVDSDAYYVYRLQVSSIN-VSVNAVQTVVRQGEN 198
Query: 379 ISV-CS 383
I++ C
Sbjct: 199 ITLMCI 204
>3b5h_A Cervical EMMPRIN, HAB18G/CD147; IG-like domain, cell invasion;
2.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4
Length = 184
Score = 62.0 bits (150), Expect = 3e-11
Identities = 28/102 (27%), Positives = 44/102 (43%), Gaps = 6/102 (5%)
Query: 255 PQITPSTFYLEIQEGKNVSLLCKVSAIPEA-KITWLFDGVPIQNESMSASESHAVYSTEE 313
P++ I EG+ L+CK ++P W M+ SES S+ +
Sbjct: 84 PRVKAVKSSEHINEGETAMLVCKSESVPPVTDWAWYKITDSEDKALMNGSESRFFVSSSQ 143
Query: 314 GTEIKKSELLIYNSNI-DDNGTFVCVAENQAGSTSSNYTIRI 354
G +SEL I N N+ D G + C + GS + T+R+
Sbjct: 144 G----RSELHIENLNMEADPGQYRCNGTSSKGSDQAIITLRV 181
Score = 49.3 bits (117), Expect = 7e-07
Identities = 13/102 (12%), Positives = 32/102 (31%), Gaps = 22/102 (21%)
Query: 268 EGKNVSLLCKVSA--IPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIY 325
G + L C ++ WL GV ++ +++ +
Sbjct: 12 LGSKILLTCSLNDSATEVTGHRWLKGGVVLKEDALP-----------------GQKTEFK 54
Query: 326 NSNIDDNGTFVCVAENQAGSTSS---NYTIRIVLKEENVEVV 364
+ D G + CV + T++ + R+ + + +
Sbjct: 55 VDSDDQWGEYSCVFLPEPMGTANIQLHGPPRVKAVKSSEHIN 96
>2edf_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 103
Score = 59.6 bits (145), Expect = 3e-11
Identities = 19/82 (23%), Positives = 35/82 (42%), Gaps = 11/82 (13%)
Query: 264 LEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELL 323
+ G++V L C++S + WL D I+ S+ + V EG + L+
Sbjct: 18 QWVAPGEDVELRCELSRAG-TPVHWLKDRKAIRK-----SQKYDV--VCEG---TMAMLV 66
Query: 324 IYNSNIDDNGTFVCVAENQAGS 345
I +++ D G + C E +
Sbjct: 67 IRGASLKDAGEYTCEVEASKST 88
>3so5_A LIG-3, leucine-rich repeats and immunoglobulin-like DOMA protein 3;
structural genomics, joint center for struct genomics,
JCSG; HET: MLY MSE; 1.70A {Mus musculus}
Length = 112
Score = 60.1 bits (145), Expect = 3e-11
Identities = 22/105 (20%), Positives = 37/105 (35%), Gaps = 8/105 (7%)
Query: 251 LACE----PQITPSTFYLEIQEGKNVSLLCKVSAIPEAKIT--WLFDGVPIQNESMSASE 304
C+ PQIT G +VS C ++ ++ +T W D +Q+
Sbjct: 3 FVCDDFPXPQITVQPETQSAIXGSDVSFTCSAASSSDSPMTFAWXXDNEALQD--AEMEN 60
Query: 305 SHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCVAENQAGSTSSN 349
+ + + L + N G + CV N GS+ S
Sbjct: 61 YAHLRAQGGELMEYTTILRLRNVEFTSEGXYQCVISNHFGSSYSV 105
>1hnf_A CD2; T lymphocyte adhesion glycoprotein; HET: NAG; 2.50A {Homo
sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1cdb_A 1gya_A*
1qa9_A
Length = 182
Score = 61.8 bits (150), Expect = 3e-11
Identities = 17/109 (15%), Positives = 33/109 (30%), Gaps = 29/109 (26%)
Query: 245 QLSIDELACEPQITPSTFYLEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASE 304
L I E +P+I+ N +L C+V + ++ DG ++
Sbjct: 99 DLKIQERVSKPKIS--------WTCINTTLTCEVMNGTDPELNLYQDGKHLKLS------ 144
Query: 305 SHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCVAENQAGSTSSNYTIR 353
++ + + F C A N+ SS +
Sbjct: 145 ---------------QRVITHKWTTSLSAKFKCTAGNKVSKESSVEPVS 178
Score = 41.0 bits (96), Expect = 4e-04
Identities = 14/97 (14%), Positives = 29/97 (29%), Gaps = 13/97 (13%)
Query: 269 GKNVSLLCKVSAIPEAK--ITWLFDG-----VPIQNESMSASESHAVYSTEEGTEIKKSE 321
G++++L + + I W + E + E + GT
Sbjct: 14 GQDINLDIPSFQMSDDIDDIKWEKTSDKKKIAQFRKEKETFKEKDTYKLFKNGT------ 67
Query: 322 LLIYNSNIDDNGTFVCVAENQAGSTSSNYTIRIVLKE 358
L I + DD + + G + ++E
Sbjct: 68 LKIKHLKTDDQDIYKVSIYDTKGKNVLEKIFDLKIQE 104
>2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion,
membrane, development protein; HET: NAG; 1.95A
{Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A*
Length = 388
Score = 64.6 bits (157), Expect = 4e-11
Identities = 15/100 (15%), Positives = 31/100 (31%), Gaps = 20/100 (20%)
Query: 255 PQITPSTFYLEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEG 314
+ G+ C+ + P ++W+ DG I +
Sbjct: 308 LSAKIDPPTQTVDFGRPAVFTCQYTGNPIKTVSWMKDGKAIGHSE--------------- 352
Query: 315 TEIKKSELLIYNSNIDDNGTFVCVAENQAGSTSSNYTIRI 354
S L I + +D G + C N S ++ +++
Sbjct: 353 -----SVLRIESVKKEDKGMYQCFVRNDRESAEASAELKL 387
Score = 58.8 bits (142), Expect = 3e-09
Identities = 22/145 (15%), Positives = 40/145 (27%), Gaps = 18/145 (12%)
Query: 225 PMAIDPICSVPPRLSSVTIKQLSIDELACEPQITPSTFYLEIQEGKNVSLLCKVSAIPEA 284
+ + S +T S P + LE+ +SLLC P
Sbjct: 187 RLTGETRLSATKGRLVITEPISSSAPRT--PALVQKP--LELMVAHTISLLCPAQGFPAP 242
Query: 285 KITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCVAENQAG 344
W + + L+I ++ ++D+G ++CV N G
Sbjct: 243 SFRWYKFIEGTTRKQAVVLNDRVKQVS--------GTLIIKDAVVEDSGKYLCVVNNSVG 294
Query: 345 STSSNYTI------RIVLKEENVEV 363
S + + V
Sbjct: 295 GESVETVLTVTAPLSAKIDPPTQTV 319
Score = 51.9 bits (124), Expect = 4e-07
Identities = 21/126 (16%), Positives = 36/126 (28%), Gaps = 29/126 (23%)
Query: 255 PQIT--PSTFYLEIQEGKNVSLLCKVSAIPEAKITWLF-DGVPIQNESMSASESHAVYST 311
P P+ ++ + CK S P +I W+ DG + + +
Sbjct: 4 PVFLKEPTN-RIDFSNSTGAEIECKASGNPMPEIIWIRSDGTAVGD------VPGLRQIS 56
Query: 312 EEGTEIKKSELLIYNSNIDDN------GTFVCVAENQAGSTSSN-------YTIRIVLKE 358
+G L+ +D + C+A NQ GS S
Sbjct: 57 SDGK------LVFPPFRAEDYRQEVHAQVYACLARNQFGSIISRDVHVRAVVAQYYEADV 110
Query: 359 ENVEVV 364
V+
Sbjct: 111 NKEHVI 116
Score = 49.2 bits (117), Expect = 3e-06
Identities = 15/120 (12%), Positives = 30/120 (25%), Gaps = 14/120 (11%)
Query: 255 PQITPSTFYLEIQEGKNVSLLCKVSAI---PEAKITWLFDGVPIQNESMSASESHAVYST 311
+ G + + C + + ++W D + V
Sbjct: 104 QYYEADVNKEHVIRGNSAVIKCLIPSFVADFVEVVSWHTDEEENYFPGAEYDGKYLV--L 161
Query: 312 EEGTEIKKSELLIYN-SNIDDNGTFVCVAENQAGST--SSNYTIRIVLKEENVEVVTVFP 368
G L I D ++ C +++ S R+V+ E P
Sbjct: 162 PSGE------LHIREVGPEDGYKSYQCRTKHRLTGETRLSATKGRLVITEPISSSAPRTP 215
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A
resolution, N-formylmethionine, alpha subunit; HET: FME;
2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1
c.10.2.2 PDB: 1ltx_A*
Length = 567
Score = 65.2 bits (158), Expect = 4e-11
Identities = 31/169 (18%), Positives = 58/169 (34%), Gaps = 32/169 (18%)
Query: 39 SLITVVEGMDPNTQVLDYTGNNLKTLHNEKFQKMGLVNLQKIYLSRCRISVIDSKAFRGL 98
+ ++ +DP + K L KM +++ ++L+ ++V+ L
Sbjct: 406 QYFSTLKAVDP-MRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLTVLCH--LEQL 462
Query: 99 TNLVDLDFSHNVLQTVPSDTFPDYPSLMKLTLSGNPIKQIKTGAFQPLSYLVTLELSKCG 158
+ LD SHN L+ +P L L S N ++ + G
Sbjct: 463 LLVTHLDLSHNRLRALPP-ALAALRCLEVLQASDNALENVD------------------G 503
Query: 159 IEVIEDAAFVGLDSLEWLKLDNNKITTISGSNILP--TGLHGIDLHHNP 205
+ L L+ L L NN++ + L L ++L N
Sbjct: 504 VA--------NLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNS 544
Score = 63.2 bits (153), Expect = 2e-10
Identities = 26/119 (21%), Positives = 44/119 (36%), Gaps = 8/119 (6%)
Query: 23 ICKWKGGKQTVECVNKSLITVVEGMD--PNTQVLDYTGNNLKTLHNEKFQKMGLVNLQKI 80
+ K + V + +TV+ ++ LD + N L+ L L L+ +
Sbjct: 435 VLKMEYADVRVLHLAHKDLTVLCHLEQLLLVTHLDLSHNRLRALPPALAA---LRCLEVL 491
Query: 81 YLSRCRISVIDSKAFRGLTNLVDLDFSHNVLQTVPS-DTFPDYPSLMKLTLSGNPIKQI 138
S + +D L L +L +N LQ + P L+ L L GN + Q
Sbjct: 492 QASDNALENVDG--VANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQE 548
Score = 55.9 bits (134), Expect = 3e-08
Identities = 26/168 (15%), Positives = 54/168 (32%), Gaps = 19/168 (11%)
Query: 47 MDPNTQVLDYTGNNLKTL--HNEKFQKMGLVNLQKIYLSRCRISVIDSKAFRGLTNLVDL 104
Q + L+ L N+ ++ ++ + + + L +
Sbjct: 360 KSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQY-----FSTLKAV 414
Query: 105 DFSH--------NVLQTVPSDTFPDYPSLMKLTLSGNPIKQIKTGAFQPLSYLVTLELSK 156
D + S +Y + L L+ + + + L + L+LS
Sbjct: 415 DPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLTVLC--HLEQLLLVTHLDLSH 472
Query: 157 CGIEVIEDAAFVGLDSLEWLKLDNNKITTISGSNILPTGLHGIDLHHN 204
+ + A L LE L+ +N + + G LP L + L +N
Sbjct: 473 NRLRALPPA-LAALRCLEVLQASDNALENVDGVANLPR-LQELLLCNN 518
Score = 41.3 bits (96), Expect = 0.001
Identities = 17/93 (18%), Positives = 29/93 (31%), Gaps = 12/93 (12%)
Query: 49 PNTQVLDYTGNNLKTLHNEKFQKMGLVNLQKIYLSRCRISVIDS-KAFRGLTNLVDLDFS 107
+VL + N L+ + L LQ++ L R+ + + LV L+
Sbjct: 486 RCLEVLQASDNALENVDG--VAN--LPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQ 541
Query: 108 HNVLQTVPSDTFPDYPSLMKLTLSGNPIKQIKT 140
N L + L + I T
Sbjct: 542 GNSLCQE-----EGIQERLAEMLPS--VSSILT 567
>3ejj_X Macrophage colony-stimulating factor 1 receptor; growth
factor-receptor complex, receptor tyrosine kinase, CY
4-helix bundle, ATP-binding; HET: NAG; 2.40A {Mus
musculus}
Length = 289
Score = 63.4 bits (154), Expect = 4e-11
Identities = 18/101 (17%), Positives = 33/101 (32%), Gaps = 7/101 (6%)
Query: 255 PQITPSTFYLEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEG 314
PQI L G+ ++C + L G +++ Y
Sbjct: 187 PQIKLEPSKLVRIRGEAAQIVCSATNAEVGFNVILKRGDTKLEIPLNSDFQDNYYKKV-- 244
Query: 315 TEIKKSELLIYNSNIDDNGTFVCVAENQAGSTSSNYTIRIV 355
L + + D G + CVA N G+ ++ ++V
Sbjct: 245 -----RALSLNAVDFQDAGIYSCVASNDVGTRTATMNFQVV 280
Score = 59.6 bits (144), Expect = 8e-10
Identities = 18/100 (18%), Positives = 32/100 (32%), Gaps = 19/100 (19%)
Query: 255 PQITPSTFYLEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEG 314
P I PS L ++ G+ V+L C + + W P + S
Sbjct: 5 PVIEPSGPELVVEPGETVTLRCVSNG----SVEWDGPISPYWTLDPESPGST-------- 52
Query: 315 TEIKKSELLIYNSNIDDNGTFVCVAENQAGSTSSNYTIRI 354
L N+ + GT+ C + S+ + +
Sbjct: 53 -------LTTRNATFKNTGTYRCTELEDPMAGSTTIHLYV 85
Score = 55.0 bits (132), Expect = 3e-08
Identities = 17/114 (14%), Positives = 39/114 (34%), Gaps = 14/114 (12%)
Query: 264 LEIQEGKNVSLLCKVSAI-PEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSEL 322
+ + EG+ L C ++ + ++ + +G S
Sbjct: 99 VTVVEGQEAVLPCLITDPALKDSVSLMREGGRQVLRKTVYFFSP------------WRGF 146
Query: 323 LIYNSNIDDNGTFVCVAENQA-GSTSSNYTIRIVLKEENVEVVTVFPLEYVLIV 375
+I + + D+ T+VC STS+ +++ + + P + V I
Sbjct: 147 IIRKAKVLDSNTYVCKTMVNGRESTSTGIWLKVNRVHPEPPQIKLEPSKLVRIR 200
>2edk_A Myosin-binding protein C, fast-type; IG fold, fast MYBP-C,
C-protein, skeletal muscle fast- isoform, MYBPCF,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 101
Score = 59.3 bits (144), Expect = 4e-11
Identities = 13/82 (15%), Positives = 30/82 (36%), Gaps = 7/82 (8%)
Query: 264 LEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELL 323
++ G V + +VS A++ W+ +GV + S ++G + L+
Sbjct: 18 QQVFVGDRVEMAVEVSE-EGAQVMWMKNGVELTR---EDSFKARYRFKKDGK---RHILI 70
Query: 324 IYNSNIDDNGTFVCVAENQAGS 345
+ +D G + +
Sbjct: 71 FSDVVQEDRGRYQVITNGGQCE 92
>2eny_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 104
Score = 58.9 bits (143), Expect = 5e-11
Identities = 17/85 (20%), Positives = 29/85 (34%), Gaps = 11/85 (12%)
Query: 264 LEIQEGKNVSLLCKVSA-IPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSEL 322
+E+ EG++ S C +S W G + S +T +G +K L
Sbjct: 18 MEVLEGESCSFECVLSHESASDPAMWTVGGKTVG-------SSSRFQATRQG---RKYIL 67
Query: 323 LIYNSNIDDNGTFVCVAENQAGSTS 347
++ + D G V S
Sbjct: 68 VVREAAPSDAGEVVFSVRGLTSKAS 92
>2e6p_A Obscurin-like protein 1; IG-like domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 104
Score = 58.9 bits (143), Expect = 6e-11
Identities = 19/82 (23%), Positives = 34/82 (41%), Gaps = 11/82 (13%)
Query: 264 LEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELL 323
L + V L C++S + TW DG ++ ES + +G +K L+
Sbjct: 20 LTFTTSERVVLTCELSR-VDFPATWYKDGQKVE-------ESELLVVKMDG---RKHRLI 68
Query: 324 IYNSNIDDNGTFVCVAENQAGS 345
+ + + D+G F C E +
Sbjct: 69 LPEAKVQDSGEFECRTEGVSAF 90
>2yuv_A Myosin-binding protein C, SLOW-type; SLOW-type myosin-binding
protein C, immunoglobulin domain, structural genomics,
NPPSFA; NMR {Homo sapiens} PDB: 2yxm_A
Length = 100
Score = 58.5 bits (142), Expect = 8e-11
Identities = 15/84 (17%), Positives = 34/84 (40%), Gaps = 11/84 (13%)
Query: 264 LEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELL 323
++ +G V + +++ P+ ++ W +G I+ S +G + L
Sbjct: 18 YQVDKGGRVRFVVELAD-PKLEVKWYKNGQEIR-------PSTKYIFEHKGC---QRILF 66
Query: 324 IYNSNIDDNGTFVCVAENQAGSTS 347
I N + D+ + A ++ ST
Sbjct: 67 INNCQMTDDSEYYVTAGDEKCSTE 90
>2v9t_A Roundabout homolog 1; structural protein-receptor complex,
developmental protein, domain, roundabout, chemotaxis,
LRR domain; 1.70A {Homo sapiens}
Length = 117
Score = 58.3 bits (141), Expect = 1e-10
Identities = 21/95 (22%), Positives = 36/95 (37%), Gaps = 3/95 (3%)
Query: 255 PQITPSTFYLEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEG 314
P+I L + +G+ +L CK P I W G ++ + + G
Sbjct: 10 PRIVEHPSDLIVSKGEPATLNCKAEGRPTPTIEWYKGGERVETDKDDPRSHRMLL--PSG 67
Query: 315 TEIKKSELLIYNSNIDDNGTFVCVAENQAGSTSSN 349
+ ++ + D G +VCVA N G S+
Sbjct: 68 SLF-FLRIVHGRKSRPDEGVYVCVARNYLGEAVSH 101
>3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33;
2.40A {Caenorhabditis elegans} PDB: 1koa_A
Length = 573
Score = 63.7 bits (155), Expect = 1e-10
Identities = 22/137 (16%), Positives = 44/137 (32%), Gaps = 14/137 (10%)
Query: 216 RRWLESTKTPMAIDPICSV----PPRLSSVTIKQLSIDELACEPQITPSTFYLEIQEGKN 271
++ + + I + R +I+ D +P+ + E+ EG++
Sbjct: 440 TKYDAWPEPLPPLGRISNYSSLRKHRPQEYSIRDAFWDRSEAQPRFIVKPYGTEVGEGQS 499
Query: 272 VSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDD 331
+ C+V A +TW D ++ + L I DD
Sbjct: 500 ANFYCRVIASSPPVVTWHKDDRELKQ------SVKYMKRYNGN----DYGLTINRVKGDD 549
Query: 332 NGTFVCVAENQAGSTSS 348
G + A+N G+
Sbjct: 550 KGEYTVRAKNSYGTKEE 566
>1gxe_A Myosin binding protein C, cardiac-type; cytoskeleton, muscle, IGI,
thick filament, immunoglobulin domain; NMR {Homo
sapiens} SCOP: b.1.1.4
Length = 139
Score = 59.0 bits (142), Expect = 2e-10
Identities = 12/111 (10%), Positives = 31/111 (27%), Gaps = 19/111 (17%)
Query: 264 LEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEI------ 317
+ + G + L +S P + W + + + +
Sbjct: 28 IVVVAGNKLRLDVPISGDPAPTVIWQKAITQGNKAPARPAPDAPEDTGDSDEWVFDKKLL 87
Query: 318 -------------KKSELLIYNSNIDDNGTFVCVAENQAGSTSSNYTIRIV 355
+S + + +D G + +N G N T++++
Sbjct: 88 CETEGRVRVETTKDRSIFTVEGAEKEDEGVYTVTVKNPVGEDQVNLTVKVI 138
>4dkd_C Macrophage colony-stimulating factor 1 receptor; dimeric four-helix
bundle cytokine, receptor tyrosine kinase glycosylation;
HET: NAG BMA; 3.00A {Homo sapiens}
Length = 292
Score = 61.5 bits (149), Expect = 2e-10
Identities = 21/116 (18%), Positives = 43/116 (37%), Gaps = 7/116 (6%)
Query: 240 SVTIKQLSIDELACEPQITPSTFYLEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNES 299
S++I+ + P +T L G+ ++C S++ +L N
Sbjct: 172 SISIRLKVQKVIPGPPALTLVPAELVRIRGEAAQIVCSASSVDVNFDVFLQHN----NTK 227
Query: 300 MSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCVAENQAGSTSSNYTIRIV 355
++ + ++ K L + + G + CVA N G S++ R+V
Sbjct: 228 LAIPQQSDFHNNRYQ---KVLTLNLDQVDFQHAGNYSCVASNVQGKHSTSMFFRVV 280
Score = 54.6 bits (131), Expect = 4e-08
Identities = 19/100 (19%), Positives = 29/100 (29%), Gaps = 19/100 (19%)
Query: 255 PQITPSTFYLEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEG 314
P I PS L ++ G V+L C + W P S S
Sbjct: 5 PVIEPSVPELVVKPGATVTLRCVG----NGSVEWDGPPSPHWTLYSDGSSSI-------- 52
Query: 315 TEIKKSELLIYNSNIDDNGTFVCVAENQAGSTSSNYTIRI 354
L N+ + GT+ C S+ + +
Sbjct: 53 -------LSTNNATFQNTGTYRCTEPGDPLGGSAAIHLYV 85
Score = 52.3 bits (125), Expect = 2e-07
Identities = 18/115 (15%), Positives = 41/115 (35%), Gaps = 16/115 (13%)
Query: 264 LEIQEGKNVSLLCKVSA-IPEAKITWL-FDGVPIQNESMSASESHAVYSTEEGTEIKKSE 321
+ + E ++ L C ++ + EA ++ + G P+ ++ +S G
Sbjct: 99 VVVFEDQDALLPCLLTDPVLEAGVSLVRVRGRPLM------RHTNYSFSPWHG------- 145
Query: 322 LLIYNSNIDDNGTFVCVAENQAGSTSSN-YTIRIVLKEENVEVVTVFPLEYVLIV 375
I+ + + + C A S +++ +T+ P E V I
Sbjct: 146 FTIHRAKFIQSQDYQCSALMGGRKVMSISIRLKVQKVIPGPPALTLVPAELVRIR 200
>2k1m_A Myosin-binding protein C, cardiac-type; IG-I domain, cardiac
muscle, hypertrophic cardiomyopathy, actin-binding, cell
adhesion, disease mutation; NMR {Homo sapiens}
Length = 95
Score = 56.6 bits (137), Expect = 4e-10
Identities = 13/84 (15%), Positives = 24/84 (28%), Gaps = 11/84 (13%)
Query: 264 LEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELL 323
+E+ G + K+ W G I S+ EG + L
Sbjct: 18 VEVAAGSPAVFEAETER-AGVKVRWQRGGSDIS-------ASNKYGLATEG---TRHTLT 66
Query: 324 IYNSNIDDNGTFVCVAENQAGSTS 347
+ D G++ +A +
Sbjct: 67 VREVGPADQGSYAVIAGSSKVKFD 90
>2dm7_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} PDB: 2edl_A
2edw_A 2gqh_A 2edt_A 2edq_A 2edr_A
Length = 108
Score = 56.6 bits (137), Expect = 4e-10
Identities = 16/82 (19%), Positives = 33/82 (40%), Gaps = 12/82 (14%)
Query: 264 LEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELL 323
E EG +L C++S A + W ++ + ++G + EL
Sbjct: 18 KEASEGATATLQCELS--KVAPVEWKKGPETLR-------DGGRYSLKQDG---TRCELQ 65
Query: 324 IYNSNIDDNGTFVCVAENQAGS 345
I++ ++ D G + C+ + S
Sbjct: 66 IHDLSVADAGEYSCMCGQERTS 87
>2dku_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 103
Score = 56.6 bits (137), Expect = 4e-10
Identities = 17/82 (20%), Positives = 28/82 (34%), Gaps = 11/82 (13%)
Query: 264 LEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELL 323
L+++E CK P A +TW + ++ S H ++EG L
Sbjct: 18 LQVEEKGTAVFTCKTEH-PAATVTWRKGLLELRA-----SGKHQP--SQEG---LTLRLT 66
Query: 324 IYNSNIDDNGTFVCVAENQAGS 345
I D+ T+ C
Sbjct: 67 ISALEKADSDTYTCDIGQAQSR 88
>2cpc_A KIAA0657 protein; immunoglobulin domain, IG domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 113
Score = 56.3 bits (136), Expect = 6e-10
Identities = 19/102 (18%), Positives = 43/102 (42%), Gaps = 11/102 (10%)
Query: 246 LSIDELACEPQITPSTFYLEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASES 305
S +++ Y+ + V L C++ P A++ W DG + ES
Sbjct: 5 SSGTDVSSWIVYPSGKVYVAAVRLERVVLTCELCR-PWAEVRWTKDGEEVV-------ES 56
Query: 306 HAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCVAENQAGSTS 347
A+ +E L++ ++D+G ++C ++++ S +
Sbjct: 57 PALLLQKED---TVRRLVLPAVQLEDSGEYLCEIDDESASFT 95
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2
protein, silver-stainable protein SSP29, acidic prote in
leucines, structural genomics; NMR {Homo sapiens} PDB:
2rr6_A 2jqd_A
Length = 168
Score = 57.4 bits (139), Expect = 7e-10
Identities = 28/118 (23%), Positives = 45/118 (38%), Gaps = 6/118 (5%)
Query: 90 IDSKAFRGLTNLVDLDFSHNVLQTVPSDTFPDYPSLMKLTLSGNPIKQIKTGAFQPLSYL 149
+ ++ + LV LD + + T ++ +L L+L + + L L
Sbjct: 18 LRNRTPAAVRELV-LDNCKSNDGKIEGLT-AEFVNLEFLSLINVGLISVSN--LPKLPKL 73
Query: 150 VTLELSKCGIEVIEDAAFVGLDSLEWLKLDNNKITTISGSNILP--TGLHGIDLHHNP 205
LELS+ I D L +L L L NK+ IS L L +DL +
Sbjct: 74 KKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCE 131
Score = 54.4 bits (131), Expect = 9e-09
Identities = 26/107 (24%), Positives = 40/107 (37%), Gaps = 8/107 (7%)
Query: 37 NKSLITVVEGMD---PNTQVLDYTGNNLKTLHNEKFQKMGLVNLQKIYLSRCRISVIDSK 93
KS +EG+ N + L L ++ N K L L+K+ LS RI
Sbjct: 34 CKSNDGKIEGLTAEFVNLEFLSLINVGLISVSN--LPK--LPKLKKLELSENRIFGGLDM 89
Query: 94 AFRGLTNLVDLDFSHNVLQTVPS-DTFPDYPSLMKLTLSGNPIKQIK 139
L NL L+ S N L+ + + + L L L + +
Sbjct: 90 LAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLN 136
>3rjd_A High affinity immunoglobulin gamma FC receptor I; immune system;
HET: NAG MAN FUC P33; 2.65A {Homo sapiens}
Length = 262
Score = 59.5 bits (144), Expect = 7e-10
Identities = 16/103 (15%), Positives = 32/103 (31%), Gaps = 19/103 (18%)
Query: 254 EPQITPSTFYLEIQEGKNVSLLCKVSA-IPEAKITWLFDGVPIQNESMSASESHAVYSTE 312
+ EG+ ++L C + + +G + +
Sbjct: 82 RGWLLLQVSSRVFTEGEPLALRCHAWKDKLVYNVLYYRNGKAFKFFHWN----------- 130
Query: 313 EGTEIKKSELLIYNSNIDDNGTFVCVAENQAGSTSSNYTIRIV 355
S L I +NI NGT+ C + TS+ ++ +
Sbjct: 131 -------SNLTILKTNISHNGTYHCSGMGKHRYTSAGISVTVK 166
Score = 43.0 bits (101), Expect = 2e-04
Identities = 19/109 (17%), Positives = 38/109 (34%), Gaps = 24/109 (22%)
Query: 245 QLSIDELACEPQITPSTFYLEIQEGKNVSLLCKVSAIPEAKITWLF-----DGVPIQNES 299
+++ EL P + S + EG V+L C+ + + L+ ++ +
Sbjct: 162 SVTVKELFPAPVLNASVT-SPLLEGNLVTLSCETKLLLQRPGLQLYFSFYMGSKTLRGRN 220
Query: 300 MSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCVAENQAGSTSS 348
S SE I + +D+G + C A + G+
Sbjct: 221 TS------------------SEYQILTARREDSGLYWCEAATEDGNVLK 251
Score = 42.6 bits (100), Expect = 3e-04
Identities = 16/99 (16%), Positives = 34/99 (34%), Gaps = 21/99 (21%)
Query: 255 PQITPSTFYLEIQEGKNVSLLCKVSAIPE-AKITWLFDGVPIQNESMSASESHAVYSTEE 313
IT ++ + + + V+L C+V +P + W +G Q +
Sbjct: 2 AVITLQPPWVSVFQEETVTLHCEVLHLPGSSSTQWFLNGTATQTST-------------- 47
Query: 314 GTEIKKSELLIYNSNIDDNGTFVCVAENQAGSTSSNYTI 352
I +++++D+G + C S I
Sbjct: 48 ------PSYRITSASVNDSGEYRCQRGLSGRSDPIQLEI 80
>4dep_C Interleukin-1 receptor accessory protein; B-trefoil,
immunoglobulin, immune system, extracellular; HET: NAG;
3.10A {Homo sapiens} PDB: 3o4o_B*
Length = 349
Score = 60.3 bits (145), Expect = 8e-10
Identities = 20/122 (16%), Positives = 48/122 (39%), Gaps = 7/122 (5%)
Query: 240 SVTIKQLSIDELACEPQITP--STFYLEIQEGKNVSLLCKV----SAIPEAKITWLFDGV 293
++T+K + + A P I E + G+ + + C V ++ W DG
Sbjct: 210 TLTVKVVGSPKNAVPPVIHSPNDHVVYEKEPGEELLIPCTVYFSFLMDSRNEVWWTIDGK 269
Query: 294 PIQNESMSASESHAVYSTEEGTEIKKSELLIYN-SNIDDNGTFVCVAENQAGSTSSNYTI 352
+ ++ + + ++ + E + L I ++ D ++VC A + G + +
Sbjct: 270 KPDDITIDVTINESISHSRTEDETRTQILSIKKVTSEDLKRSYVCHARSAKGEVAKAAKV 329
Query: 353 RI 354
+
Sbjct: 330 KQ 331
Score = 49.9 bits (118), Expect = 2e-06
Identities = 18/141 (12%), Positives = 44/141 (31%), Gaps = 18/141 (12%)
Query: 253 CEPQITPSTFYLEIQEGKNVSLLC-----------KVSAIPEAKITWLFDGVPIQN-ESM 300
C+ + +++ E + + C + + W + E +
Sbjct: 6 CDDWGLDTMRQIQVFEDEPARIKCPLFEHFLKFNYSTAHSAGLTLIWYWTRQDRDLEEPI 65
Query: 301 SASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCVAENQAGSTSSNYTIRIVLKEEN 360
+ S E+ L + ++D G + C+ N + + + +V K+
Sbjct: 66 NFRLPENRISKEKDV------LWFRPTLLNDTGNYTCMLRNTTYCSKVAFPLEVVQKDSC 119
Query: 361 VEVVTVFPLEYVLIVSGIISV 381
P+ + I GI +
Sbjct: 120 FNSPMKLPVHKLYIEYGIQRI 140
Score = 46.8 bits (110), Expect = 2e-05
Identities = 20/127 (15%), Positives = 36/127 (28%), Gaps = 19/127 (14%)
Query: 248 IDELACEPQITPSTFYLEIQEGKNVSLLC-----KVSAIPEAKITWLFDGVPIQNESMSA 302
+ + +C + E + C + + ITW IQN +
Sbjct: 114 VQKDSCFNSPMKLPVHKLYIEYGIQRITCPNVDGYFPSSVKPTITWYMGCYKIQNFNNVI 173
Query: 303 SESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCVAENQAGSTSSNYTIRIVLKEENVE 362
E L + I +NG + CV + + T + +K
Sbjct: 174 PEG--------------MNLSFLIALISNNGNYTCVVTYPENGRTFHLTRTLTVKVVGSP 219
Query: 363 VVTVFPL 369
V P+
Sbjct: 220 KNAVPPV 226
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder,
flagella, contractIle protein; NMR {Chlamydomonas
reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Length = 198
Score = 58.2 bits (141), Expect = 9e-10
Identities = 30/130 (23%), Positives = 56/130 (43%), Gaps = 7/130 (5%)
Query: 77 LQKIYLSRCRISVIDSKAFRGLTNL--VDLDFSHNVLQTVPSDTFPDYPSLMKLTLSGNP 134
+ K + I + + + T V+L ++ + + T + L LS N
Sbjct: 1 MAKATTIKDAIRIFEERKSVVATEAEKVELHGMIPPIEKMDA-TLSTLKACKHLALSTNN 59
Query: 135 IKQIKTGAFQPLSYLVTLELSKCGIEVIEDAAFVGLDSLEWLKLDNNKITTISGSNILPT 194
I++I + + L L L + I+ IE+ V D+LE L + N+I ++SG L
Sbjct: 60 IEKIS--SLSGMENLRILSLGRNLIKKIENLDAV-ADTLEELWISYNQIASLSGIEKLVN 116
Query: 195 GLHGIDLHHN 204
L + + +N
Sbjct: 117 -LRVLYMSNN 125
Score = 56.6 bits (137), Expect = 2e-09
Identities = 23/113 (20%), Positives = 42/113 (37%), Gaps = 10/113 (8%)
Query: 40 LITVVEGMD--PNTQVLDYTGNNLKTLHN-EKFQKMGLVNLQKIYLSRCRISVIDSKAFR 96
I + + N ++L N +K + N + L+++++S +I+ +
Sbjct: 59 NIEKISSLSGMENLRILSLGRNLIKKIENLDAVAD----TLEELWISYNQIASL--SGIE 112
Query: 97 GLTNLVDLDFSHNVLQTVPS-DTFPDYPSLMKLTLSGNPIKQIKTGAFQPLSY 148
L NL L S+N + D L L L+GNP+ Y
Sbjct: 113 KLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEY 165
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP,
ribonucleoprotein, RNA binding protein/RNA complex;
2.38A {Homo sapiens} SCOP: c.10.2.4
Length = 176
Score = 57.4 bits (139), Expect = 1e-09
Identities = 31/155 (20%), Positives = 53/155 (34%), Gaps = 33/155 (21%)
Query: 53 VLDYTGNNLKTLHNEKFQKMGLVNLQKIYLSRCRISVIDSKAFRGLTNLVDLDFSHNVLQ 112
++ T ++ V +++ L +I VI++ L +DFS N ++
Sbjct: 1 MVKLTAELIEQAAQYT----NAVRDRELDLRGYKIPVIENLG-ATLDQFDAIDFSDNEIR 55
Query: 113 TVPSDTFPDYPSLMKLTLSGNPIKQIKTGAFQPLSYLVTLELSKCGIEVIEDAAFVGLDS 172
+ D FP L L ++ N I +I G Q L
Sbjct: 56 KL--DGFPLLRRLKTLLVNNNRICRIGEGLDQ------------------------ALPD 89
Query: 173 LEWLKLDNNKITTISGSNILP--TGLHGIDLHHNP 205
L L L NN + + + L L + + NP
Sbjct: 90 LTELILTNNSLVELGDLDPLASLKSLTYLCILRNP 124
Score = 55.4 bits (134), Expect = 5e-09
Identities = 28/150 (18%), Positives = 51/150 (34%), Gaps = 11/150 (7%)
Query: 40 LITVVEGMD--PNTQVLDYTGNNLKTLHNEKFQKMGLVNLQKIYLSRCRISVIDSKAFRG 97
LI + LD G + + N L I S I +D F
Sbjct: 8 LIEQAAQYTNAVRDRELDLRGYKIPVIENLGAT---LDQFDAIDFSDNEIRKLDG--FPL 62
Query: 98 LTNLVDLDFSHNVLQTVPSDTFPDYPSLMKLTLSGNPIKQIKT-GAFQPLSYLVTLELSK 156
L L L ++N + + P L +L L+ N + ++ L L L + +
Sbjct: 63 LRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILR 122
Query: 157 CGIEVIED-AAFVGLDSLEWLK-LDNNKIT 184
+ + +V + + ++ LD K+
Sbjct: 123 NPVTNKKHYRLYV-IYKVPQVRVLDFQKVK 151
>3o4o_C Interleukin-1 receptor type 2; cytokine-receptor complex,
beta-trefoil, IG-like fold, immun; HET: NAG; 3.30A {Homo
sapiens}
Length = 339
Score = 59.3 bits (143), Expect = 2e-09
Identities = 23/120 (19%), Positives = 42/120 (35%), Gaps = 17/120 (14%)
Query: 268 EGKNVSLLCK-------VSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKS 320
EG+ V+L C S P +TW + E ++G
Sbjct: 32 EGEPVALRCPQVPYWLWASVSPRINLTWHKNDSARTVPG----EEETRMWAQDGA----- 82
Query: 321 ELLIYNSNIDDNGTFVCVAENQAGSTSSNYTIRIVLKEENVEVVTVFPLEYVLIVSGIIS 380
L + + +D+GT+VC N + + +R+ + +P L SG++
Sbjct: 83 -LWLLPALQEDSGTYVCTTRNASYCDKMSIELRVFENTDAFLPFISYPQILTLSTSGVLV 141
Score = 58.9 bits (142), Expect = 2e-09
Identities = 18/109 (16%), Positives = 39/109 (35%), Gaps = 16/109 (14%)
Query: 254 EPQITPSTFYLEIQEGKNVSLLC-----KVSAIPEAKITWLFDGVPIQNESMSASESHAV 308
+ + ++ + + L+C + KI W D + + +
Sbjct: 120 DAFLPFISYPQILTLSTSGVLVCPDLSEFTRDKTDVKIQWYKDSLLLDK-------DNEK 172
Query: 309 YSTEEGTEIKKSELLIYNSNIDDNGTFVCVAENQAGSTSSNYTIRIVLK 357
+ + GT + LL+++ ++D G + CV N T I L+
Sbjct: 173 FLSVRGT----THLLVHDVALEDAGYYRCVLTFAHEGQQYNITRSIELR 217
Score = 56.2 bits (135), Expect = 2e-08
Identities = 21/112 (18%), Positives = 36/112 (32%), Gaps = 11/112 (9%)
Query: 255 PQITPSTFYLEIQEGKNVSLLCKVSA---IPEAKITW-LFDGVPIQNESMSA--SESHAV 308
P I + G +++ CKV P + W + I++ +E
Sbjct: 227 PVIISPLKTISASLGSRLTIPCKVFLGTGTPLTTMLWWTANDTHIESAYPGGRVTEGPRQ 286
Query: 309 YSTEEGTEIKKSELLIYNSNIDDNGT-FVCVAENQAGSTSSNYTIRIVLKEE 359
+E + L+ +D F CV N T+R +KE
Sbjct: 287 EYSENNENYIEVPLIFDPVTREDLHMDFKCVVHNTLSFQ----TLRTTVKEH 334
>2e7b_A Obscurin; IG-like domain, structural genomics, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens} PDB: 2yz8_A
Length = 103
Score = 53.9 bits (130), Expect = 3e-09
Identities = 19/82 (23%), Positives = 34/82 (41%), Gaps = 11/82 (13%)
Query: 264 LEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELL 323
LE+ EG +L C +S++ A + W + ++ +EG EL+
Sbjct: 18 LEVLEGGAATLRCVLSSVA-APVKWCYGNNVLR-------PGDKYSLRQEG---AMLELV 66
Query: 324 IYNSNIDDNGTFVCVAENQAGS 345
+ N D+G + C +Q S
Sbjct: 67 VRNLRPQDSGRYSCSFGDQTTS 88
>1gl4_B Basement membrane-specific heparan sulfate proteoglycan core
protein; immunoglobulin-like domain, extracellular
matrix; HET: EPE; 2.0A {Mus musculus} SCOP: b.1.1.4
Length = 98
Score = 53.7 bits (129), Expect = 4e-09
Identities = 18/103 (17%), Positives = 32/103 (31%), Gaps = 19/103 (18%)
Query: 255 PQIT-PSTFYLEIQEGKNVSLLCKVSA-IPEAKITWL-FDGVPIQNESMSASESHAVYST 311
+T ++ G +V+ +C + P + W + + +M
Sbjct: 10 IMVTVEEQRSQSVRPGADVTFICTAKSKSPAYTLVWTRLHNGKLPSRAM----------D 59
Query: 312 EEGTEIKKSELLIYNSNIDDNGTFVCVAENQAGSTSSNYTIRI 354
G L I N D GT+VC N T+ +
Sbjct: 60 FNGI------LTIRNVQPSDAGTYVCTGSNMFAMDQGTATLHV 96
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear
protein; 2.40A {Homo sapiens} PDB: 2je1_A
Length = 149
Score = 54.7 bits (132), Expect = 5e-09
Identities = 22/107 (20%), Positives = 41/107 (38%), Gaps = 8/107 (7%)
Query: 37 NKSLITVVEGMD---PNTQVLDYTGNNLKTLHNEKFQKMGLVNLQKIYLSRCRISVIDSK 93
++S +EG+ + L L ++ N K L L+K+ LS R+S
Sbjct: 27 SRSNEGKLEGLTDEFEELEFLSTINVGLTSIAN--LPK--LNKLKKLELSDNRVSGGLEV 82
Query: 94 AFRGLTNLVDLDFSHNVLQTVPS-DTFPDYPSLMKLTLSGNPIKQIK 139
NL L+ S N ++ + + + +L L L + +
Sbjct: 83 LAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLN 129
Score = 52.8 bits (127), Expect = 2e-08
Identities = 26/118 (22%), Positives = 43/118 (36%), Gaps = 6/118 (5%)
Query: 90 IDSKAFRGLTNLVDLDFSHNVLQTVPSDTFPDYPSLMKLTLSGNPIKQIKTGAFQPLSYL 149
+ ++ + LV LD S + + T ++ L L+ + I L+ L
Sbjct: 11 LRNRTPSDVKELV-LDNSRSNEGKLEGLT-DEFEELEFLSTINVGLTSI--ANLPKLNKL 66
Query: 150 VTLELSKCGIEVIEDAAFVGLDSLEWLKLDNNKITTISGSNILP--TGLHGIDLHHNP 205
LELS + + +L L L NKI +S L L +DL +
Sbjct: 67 KKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCE 124
>1sy6_A T-cell surface glycoprotein CD3 gamma/epsilon chain; CD3 epsilon,
OKT3 FAB, signaling protein/antibiotic complex; 2.10A
{Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 2atp_E*
Length = 204
Score = 56.1 bits (134), Expect = 5e-09
Identities = 17/121 (14%), Positives = 34/121 (28%), Gaps = 14/121 (11%)
Query: 232 CSVPPRLSSVTIKQLSIDELACEPQITPSTFYLEIQEGKNVSLLCKVSAIPEAKITWLFD 291
+ + + + E T Y G V L C P ++I W +
Sbjct: 91 DAAKKDDAKKDDAKKDGSDGNEEMGGITQTPYKVSISGTTVILTCPQY--PGSEILWQHN 148
Query: 292 GVPIQNESMSASESHAVYSTEEGTEIKKSELLIYN-SNIDDNGTFVCVAENQAGSTSSNY 350
I + + + L + S ++ +G +VC ++ Y
Sbjct: 149 DKNIGGDEDDKNIGS-----------DEDHLSLKEFSELEQSGYYVCYPRGSKPEDANFY 197
Query: 351 T 351
Sbjct: 198 L 198
Score = 47.6 bits (112), Expect = 4e-06
Identities = 16/102 (15%), Positives = 25/102 (24%), Gaps = 20/102 (19%)
Query: 265 EIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLI 324
+ QE +V L C ITW DG I K + +
Sbjct: 14 DYQEDGSVLLTCDA---EAKNITWFKDGKMIGF-----------------LTEDKKKWNL 53
Query: 325 YNSNIDDNGTFVCVAENQAGSTSSNYTIRIVLKEENVEVVTV 366
++ D G + C Y + +
Sbjct: 54 GSNAKDPRGMYQCKGSQNKSKPLQVYYRMGSADDAKKDAAKK 95
>2edh_A Obscurin; structural genomics, NPPSFA, national project on P
structural and functional analyses, riken structural
genomics/proteomics initiative; NMR {Homo sapiens}
Length = 113
Score = 53.5 bits (129), Expect = 6e-09
Identities = 17/82 (20%), Positives = 34/82 (41%), Gaps = 12/82 (14%)
Query: 264 LEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELL 323
E EG L C++S A + W +++ + H++ ++G + EL
Sbjct: 29 EEATEGATAVLRCELS--KMAPVEWWKGHETLRD-----GDRHSL--RQDG---ARCELQ 76
Query: 324 IYNSNIDDNGTFVCVAENQAGS 345
I +D G ++C+ + S
Sbjct: 77 IRGLVAEDAGEYLCMCGKERTS 98
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 58.3 bits (140), Expect = 7e-09
Identities = 88/604 (14%), Positives = 175/604 (28%), Gaps = 167/604 (27%)
Query: 37 NKSLITV-----VEGMDPNTQVLDYTGNNLKTLHNEKFQKMGLVNLQKIYLSRCRISVID 91
K +++V V+ D V D + L + + L +
Sbjct: 18 YKDILSVFEDAFVDNFDCK-DVQDMPKSILSKEEIDHIIMSKDAVSGTLRL----FWTLL 72
Query: 92 SKAFRGLTNLV------DLDFSHNVLQTVPSDT--------------FPDYPSLMKLTLS 131
SK + V + F + ++T + D K +S
Sbjct: 73 SKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVS 132
Query: 132 -GNPIKQIKTGAFQ--PLSYLVTLELSKCG-----IEVIEDAAF------------VG-- 169
P +++ + P ++ + G ++V +
Sbjct: 133 RLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNC 192
Query: 170 ------LDSLE--WLKLDNNKITTISGSNILPTGLHGI-----DLHHNPWTCDCLLIGLR 216
L+ L+ ++D N + S+ + +H I L + +CLL+ L
Sbjct: 193 NSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLV-LL 251
Query: 217 R-WLESTKTPMAIDPIC---------SVPPRLSSVTIKQLSIDELAC--EPQITPSTF-- 262
+ K A + C V LS+ T +S+D + P S
Sbjct: 252 NVQ--NAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLK 309
Query: 263 YLEIQ------EGKNVSLLCKVSAIPEAKI-------TWLFDGVPIQNESMSAS------ 303
YL+ + E + ++S I E+ W + +S
Sbjct: 310 YLDCRPQDLPREVLTTNPR-RLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEP 368
Query: 304 -ESHAVYST----EEGTEIKKSELLIY--NSNIDDNGTFV-------CVAENQAGSTSSN 349
E ++ I L + + D V V + ST S
Sbjct: 369 AEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISI 428
Query: 350 YTIRIVLKEENVEVVTV-------------FPLEYVL-------IVSGI---ISVCSLVL 386
+I + LK + + F + ++ S I +
Sbjct: 429 PSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPE 488
Query: 387 IF-LLVLCFLCFRRKKKKLKKKDESDKNVNGSNENVVKNLRESPKYTSVNATSATCMDKV 445
L + FL FR ++K++ D + N +GS N ++ L+ Y
Sbjct: 489 RMTLFRMVFLDFRFLEQKIRH-DSTAWNASGSILNTLQQLK---FY-------------- 530
Query: 446 NGGYII-ADGHNDMMLYATDSGILVATNNMNTYPSYSISYQIEQNPDLVNDAESV--DKD 502
YI D + ++ A + N+ + +I L+ + E++ +
Sbjct: 531 -KPYICDNDPKYERLVNAILDFLPKIEENLICSKYTDL-LRIA----LMAEDEAIFEEAH 584
Query: 503 RRAQ 506
++ Q
Sbjct: 585 KQVQ 588
Score = 32.1 bits (72), Expect = 0.87
Identities = 37/259 (14%), Positives = 79/259 (30%), Gaps = 91/259 (35%)
Query: 2 MYW---IFLIATIIKIVSACPTSCICK-WKGGKQTV------ECVNKSLITVVEGMDPNT 51
M+ +F + I PT + W ++ + SL+
Sbjct: 374 MFDRLSVFPPSAHI------PTILLSLIWFDVIKSDVMVVVNKLHKYSLV---------- 417
Query: 52 QVLDYTGNNLKTLHNEKFQKMGLVNLQKIYLSRCRISVIDSKAFRGLTNLVDLDFSHNVL 111
EK K +++ IYL ++ + + A ++VD +N+
Sbjct: 418 ---------------EKQPKESTISIPSIYL-ELKVKLENEYALH--RSIVD---HYNIP 456
Query: 112 QTVPSDTFP-----DYPSLMKLTLSGNPIKQIKTGAFQPLSY-LVTLELSKCGIEVIEDA 165
+T SD Y + + + L +E +
Sbjct: 457 KTFDSDDLIPPYLDQY-------------------FYSHIGHHLKNIEHPE------RMT 491
Query: 166 AF--VGLDSLEWL--KLDNNKITTISGSNILPTGLHGIDLH------HNPWTCDCLLIGL 215
F V LD +L K+ ++ + +IL T L + + ++P + L+ +
Sbjct: 492 LFRMVFLD-FRFLEQKIRHDSTAWNASGSILNT-LQQLKFYKPYICDNDP-KYERLVNAI 548
Query: 216 RRWLESTKTPMAIDPICSV 234
+L + + +
Sbjct: 549 LDFLPKIEENLICSKYTDL 567
Score = 29.8 bits (66), Expect = 4.4
Identities = 67/503 (13%), Positives = 122/503 (24%), Gaps = 180/503 (35%)
Query: 308 VYSTEEGTE--IKKSEL-LIYNSNIDDNGT---FVCVAENQA--------GSTSSNYT-I 352
++ + + K E+ I S +GT F + Q NY +
Sbjct: 35 CKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFL 94
Query: 353 RIVLKEENVEVVTVFP-LEYVLIVSGIISVCSLVLIFLLVLCFLCFRRKKKKLKKKDESD 411
+K E + P + + + + + +F + + KL++
Sbjct: 95 MSPIKTEQRQ-----PSMMTRMYIEQRDRLYNDNQVF--AKYNVSRLQPYLKLRQALLEL 147
Query: 412 KNVNGSNENVV--------KNLRESPKYTSVNATSATCMDKV------NGGYIIADGHND 457
+ +NV+ K + A C+ + + + +
Sbjct: 148 R----PAKNVLIDGVLGSGK---------TWVALDV-CLSYKVQCKMDFKIFWLNLKNCN 193
Query: 458 MMLYATDSGILVATNNMNTYPSYSISYQIEQNPDLVNDAESVDKDRRAQGGEDTQDTQDK 517
+ +L + YQI+ N +D S K R Q +
Sbjct: 194 -----SPETVLEMLQKL--------LYQIDPNWTSRSDHSSNIKLR-------IHSIQAE 233
Query: 518 ASE-AASVQYSDSGSQCQEWGNVCYNRMQPMQHIVLNNVYN----QPADIH----LTPEK 568
S Y + C +VL NV N ++ LT
Sbjct: 234 LRRLLKSKPYEN-----------CL--------LVLLNVQNAKAWNAFNLSCKILLT--- 271
Query: 569 FMDRDGYPVDFGLPKVPTHFP------ALVPATAY----------YRTLPHRRHTAANP- 611
R DF TH L P + LP T NP
Sbjct: 272 --TRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLT-TNPR 328
Query: 612 ------------NNRYSR----EAEFLSRSSQPASYEHYAPADVRYNIEGYPSASPTPYS 655
+ + L+ + +S PA+ R + + S
Sbjct: 329 RLSIIAESIRDGLATWDNWKHVNCDKLTTIIE-SSLNVLEPAEYR---KMFDRLS----- 379
Query: 656 SAPRVTFTEPLHILQGQPMQSNPPTETTTKNEQTWTESSADEQPSTSNPEKSNENKSEGF 715
F HI PT W + +
Sbjct: 380 -----VFPPSAHI----------PTILL---SLIWFDVIKSDV----------MVVVNKL 411
Query: 716 QAKRHMIDSLLKNRDVKVGSHLH 738
SL++ + + +
Sbjct: 412 HKY-----SLVEKQPKESTISIP 429
>2ch8_A BARF1, P33, 33 kDa early protein; viral protein, immunoglobulin
domain, oncogene; HET: NAG MAN; 2.3A {Epstein-barr
virus}
Length = 201
Score = 54.7 bits (131), Expect = 1e-08
Identities = 12/97 (12%), Positives = 32/97 (32%), Gaps = 8/97 (8%)
Query: 255 PQITPSTFYLEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEG 314
++ + + + +++ C V+A P + WL + + V ++G
Sbjct: 105 LTLSVHSERSQFPDFSVLTVTCTVNAFPHPHVQWLMPEGVE---PAPTAANGGVMKEKDG 161
Query: 315 T-EIKKSELLIYNSNIDDNGTFVCVAENQAGSTSSNY 350
+ + + + + CV +N Y
Sbjct: 162 SLSVA----VDLSLPKPWHLPVTCVGKNDKEEAHGVY 194
Score = 44.3 bits (104), Expect = 4e-05
Identities = 15/97 (15%), Positives = 35/97 (36%), Gaps = 10/97 (10%)
Query: 269 GKNVSLLC---KVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEI-------K 318
G+ V+L +VS PE +++W G + + ++
Sbjct: 6 GERVTLTSYWRRVSLGPEIEVSWFKLGPGEEQVLIGRMHHDVIFIEWPFRGFFDIHRSAN 65
Query: 319 KSELLIYNSNIDDNGTFVCVAENQAGSTSSNYTIRIV 355
L++ +NI +G ++C + + + +V
Sbjct: 66 TFFLVVTAANISHDGNYLCRMKLGETEVTKQEHLSVV 102
>3jz7_A MCAR, CAR, coxsackievirus and adenovirus receptor homolog; cell
adhesion molecule, immunoglobuline superfamily,
alternative splicing, cell adhesion; 2.19A {Mus
musculus} PDB: 3mj7_B* 2npl_X
Length = 214
Score = 54.7 bits (131), Expect = 1e-08
Identities = 15/102 (14%), Positives = 32/102 (31%), Gaps = 13/102 (12%)
Query: 255 PQITPSTFYLEIQEGKNVSLLCKVSA-IPEAKITWLFDGVPIQNESMSASESHAVYSTEE 313
P T + G + L C+ + W +
Sbjct: 122 PSGTRCFVDGSEEIGNDFKLKCEPKEGSLPLQFEWQKLSDSQTMPT------------PW 169
Query: 314 GTEIKKSELLIYNSNIDDNGTFVCVAENQAGSTSSNYTIRIV 355
E+ + + N++ + +GT+ C +N+ GS + +V
Sbjct: 170 LAEMTSPVISVKNASSEYSGTYSCTVQNRVGSDQCMLRLDVV 211
Score = 42.7 bits (100), Expect = 2e-04
Identities = 20/117 (17%), Positives = 34/117 (29%), Gaps = 18/117 (15%)
Query: 256 QITPSTFYLEIQEGKNVSLLCKVSAIPE----AKITWLFDGVPIQNESMSASESHAVYST 311
IT +E +G+ L CK + PE I WL Q
Sbjct: 2 SITTPEQRIEKAKGETAYLPCKFTLSPEDQGPLDIEWLISPSDNQIVDQVIILYSGDKIY 61
Query: 312 EEGTEIKKSE--------------LLIYNSNIDDNGTFVCVAENQAGSTSSNYTIRI 354
+ K + + N + D GT+ C + G + + + +
Sbjct: 62 DNYYPDLKGRVHFTSNDVKSGDASINVTNLQLSDIGTYQCKVKKAPGVANKKFLLTV 118
>3u83_A Poliovirus receptor-related protein 1; nectin-1, hinge region
plasiticity, cell adhesion; HET: PG6; 2.50A {Homo
sapiens} PDB: 3alp_A* 3u82_B 3sku_E* 2l7j_A
Length = 331
Score = 55.9 bits (134), Expect = 2e-08
Identities = 11/101 (10%), Positives = 24/101 (23%), Gaps = 9/101 (8%)
Query: 255 PQITPSTFYLEIQEGKNVSLLCKVS-AIPEAKITWLFDGVPIQNESMSASESHAVYSTEE 313
+ Q+ K + C + P + ++W
Sbjct: 136 EGTQAVLRAKKGQDDKVLVATCTSANGKPPSVVSWETRLKGEAEYQ--------EIRNPN 187
Query: 314 GTEIKKSELLIYNSNIDDNGTFVCVAENQAGSTSSNYTIRI 354
GT S + S + C+ + T+ +
Sbjct: 188 GTVTVISRYRLVPSREAHQQSLACIVNYHMDRFKESLTLNV 228
Score = 55.5 bits (133), Expect = 2e-08
Identities = 20/91 (21%), Positives = 30/91 (32%), Gaps = 18/91 (19%)
Query: 266 IQEGKNVSLLCKVSAIPEA-KITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLI 324
+ +V L CK A P A + W + +G E + L
Sbjct: 244 YLQRMDVKLTCKADANPPATEYHWTTLNGSL----------------PKGVEAQNRTLFF 287
Query: 325 YNS-NIDDNGTFVCVAENQAGSTSSNYTIRI 354
N GT++C A N G+ S + I
Sbjct: 288 KGPINYSLAGTYICEATNPIGTRSGQVEVNI 318
Score = 42.4 bits (99), Expect = 4e-04
Identities = 17/144 (11%), Positives = 37/144 (25%), Gaps = 15/144 (10%)
Query: 255 PQITPSTFYLEIQEGKNVSLLCKVS----AIPEAKITWLFDGVPIQNESMSASESHAVYS 310
Q+ + G +V L C + ++ ++TW + + S V
Sbjct: 15 SQVVQVNDSMYGFIGTDVVLHCSFANPLPSVKITQVTWQKSTNGSKQNVAIYNPSMGVSV 74
Query: 311 TEE--------GTEIKKSELLIYNSNIDDNGTFVCVAENQAGSTSSNYTIRIVLKEENVE 362
+ + ++D G ++C + + L
Sbjct: 75 LAPYRERVEFLRPSFTDGTIRLSRLELEDEGVYICEFATFPTGNRESQ---LNLTVMAKP 131
Query: 363 VVTVFPLEYVLIVSGIISVCSLVL 386
+ + VL LV
Sbjct: 132 TNWIEGTQAVLRAKKGQDDKVLVA 155
>2ny1_B T-cell surface glycoprotein CD4; HIV, GP120, CD4, viral
protein-immune system compl; HET: NAG SUC; 1.99A {Homo
sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 2nxz_B* 2ny0_B*
2nxy_B* 2ny2_B* 2ny3_B* 2ny4_B* 2ny5_C* 2ny6_B* 3jwd_C*
3jwo_C* 1g9m_C* 1g9n_C* 1gc1_C* 1rzj_C* 1rzk_C* 3o2d_A
3cd4_A 3lqa_C* 2b4c_C* 2qad_B* ...
Length = 184
Score = 53.8 bits (129), Expect = 2e-08
Identities = 8/91 (8%), Positives = 22/91 (24%), Gaps = 20/91 (21%)
Query: 265 EIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLI 324
+ +G++++L + + L +
Sbjct: 108 HLLQGQSLTLTLESPPGSSPSVQCRSPRGKNIQGG--------------------KTLSV 147
Query: 325 YNSNIDDNGTFVCVAENQAGSTSSNYTIRIV 355
+ D+GT+ C I ++
Sbjct: 148 SQLELQDSGTWTCTVLQNQKKVEFKIDIVVL 178
Score = 53.1 bits (127), Expect = 4e-08
Identities = 16/104 (15%), Positives = 35/104 (33%), Gaps = 7/104 (6%)
Query: 267 QEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSE----- 321
++G V L C S + W + + + + + ++S
Sbjct: 8 KKGDTVELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQGN 67
Query: 322 --LLIYNSNIDDNGTFVCVAENQAGSTSSNYTIRIVLKEENVEV 363
L+I N I+D+ T++C E+Q + ++
Sbjct: 68 FPLIIKNLKIEDSDTYICEVEDQKEEVQLLVFGLTANSDTHLLQ 111
>1vca_A VCAM-D1,2, human vascular cell adhesion molecule-1; immunoglobulin
superfamily, integrin-binding, cell adhesion protein;
1.80A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 PDB: 1ij9_A
1vsc_A
Length = 202
Score = 53.2 bits (127), Expect = 4e-08
Identities = 23/122 (18%), Positives = 43/122 (35%), Gaps = 12/122 (9%)
Query: 245 QLSIDELACEPQITPSTFYLEIQEGKNVSLLCKVSA---IPEAKITWLFDGVPIQNESMS 301
Q+ I +P+I S ++ GK +++ C V+ +I L ++++
Sbjct: 85 QVEIYSFPKDPEIHLSG---PLEAGKPITVKCSVADVYPFDRLEIDLLKGDHLMKSQEFL 141
Query: 302 ASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCVAENQAGSTSSNYTIRIVLKEENV 361
T+ E+ D VC A+ S T+R +KE V
Sbjct: 142 EDADRKSLETKS------LEVTFTPVIEDIGKVLVCRAKLHIDEMDSVPTVRQAVKELQV 195
Query: 362 EV 363
+
Sbjct: 196 YI 197
Score = 47.5 bits (112), Expect = 3e-06
Identities = 18/105 (17%), Positives = 35/105 (33%), Gaps = 13/105 (12%)
Query: 266 IQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIY 325
Q G +VSL C + +W N ++ E S L +
Sbjct: 13 AQIGDSVSLTCSTTGCESPFFSWRTQIDSPLNGKVT-------------NEGTTSTLTMN 59
Query: 326 NSNIDDNGTFVCVAENQAGSTSSNYTIRIVLKEENVEVVTVFPLE 370
+ + +++C A ++ + I ++ E+ PLE
Sbjct: 60 PVSFGNEHSYLCTATCESRKLEKGIQVEIYSFPKDPEIHLSGPLE 104
>3ry4_A Low affinity immunoglobulin gamma FC region recep; FC receptor,
CD32, immunoglobulin superfamily, low responder
polymorphism, cell membrane; HET: NAG; 1.50A {Homo
sapiens} PDB: 1fcg_A 3ry5_A 1h9v_A 3d5o_F* 3ry6_C*
2fcb_A
Length = 170
Score = 52.5 bits (126), Expect = 5e-08
Identities = 16/86 (18%), Positives = 26/86 (30%), Gaps = 19/86 (22%)
Query: 265 EIQEGKNVSLLCKVSA-IPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELL 323
E QEG+ + L C P K+T+ +G + +
Sbjct: 96 EFQEGETIMLRCHSWKDKPLVKVTFFQNGKSQKFSHLD------------------PTFS 137
Query: 324 IYNSNIDDNGTFVCVAENQAGSTSSN 349
I +N +G + C SS
Sbjct: 138 IPQANHSHSGDYHCTGNIGYTLFSSK 163
Score = 45.2 bits (107), Expect = 1e-05
Identities = 14/94 (14%), Positives = 32/94 (34%), Gaps = 21/94 (22%)
Query: 255 PQITPSTFYLEIQEGKNVSLLCKVSAIPEA-KITWLFDGVPIQNESMSASESHAVYSTEE 313
+ ++ + + +V+L C+ + PE+ I W +G I +
Sbjct: 5 AVLKLEPPWINVLQEDSVTLTCQGARSPESDSIQWFHNGNLIPTHT-------------- 50
Query: 314 GTEIKKSELLIYNSNIDDNGTFVCVAENQAGSTS 347
+ +N +D+G + C + S
Sbjct: 51 ------QPSYRFKANNNDSGEYTCQTGQTSLSDP 78
>3sbw_C Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-H1, programmed
death-1 ligand 1, complex, costimulatory, immune system;
2.28A {Homo sapiens} PDB: 3fn3_A 3bis_A 3bik_A
Length = 222
Score = 53.1 bits (127), Expect = 7e-08
Identities = 16/105 (15%), Positives = 29/105 (27%), Gaps = 7/105 (6%)
Query: 250 ELACEPQITPSTFYLEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVY 309
++ + L C+ P+A++ W ++ +S +
Sbjct: 112 KVNAPYNKINQRILVVDPVTSEHELTCQAEGYPKAEVIWTSSD----HQVLSGKTTTTNS 167
Query: 310 STEEGTEIKKSELLIYNSNIDDNGTFVCVAENQAGSTSSNYTIRI 354
EE S L I N N F C + + I
Sbjct: 168 KREEKLFNVTSTLRI---NTTTNEIFYCTFRRLDPEENHTAELVI 209
Score = 35.4 bits (81), Expect = 0.039
Identities = 20/129 (15%), Positives = 40/129 (31%), Gaps = 19/129 (14%)
Query: 269 GKNVSLLCKVSAIPEA-----KITWLFDGVPI---QNESMSASESHAVYS-----TEEGT 315
G N+++ CK + + W + I + H+ Y ++
Sbjct: 16 GSNMTIECKFPVEKQLDLAALIVYWEMEDKNIIQFVHGEEDLKVQHSSYRQRARLLKDQL 75
Query: 316 EIKKSELLIYNSNIDDNGTFVCVAENQAGSTSSNYTIRIVLKEENVEVVTVFPLEYVLIV 375
+ + L I + + D G + C+ S RI +K + V V
Sbjct: 76 SLGNAALQITDVKLQDAGVYRCMI-----SYGGADYKRITVKVNAPYNKINQRILVVDPV 130
Query: 376 SGIISV-CS 383
+ + C
Sbjct: 131 TSEHELTCQ 139
>3bp6_B Programmed cell death 1 ligand 2; PD-1, PD-L2, complex,
costimulation, glycoprotein, immunoglo domain, membrane,
transmembrane, receptor; 1.60A {Mus musculus} PDB:
3bp5_B 3rnq_B 3bov_A 3rnk_B
Length = 202
Score = 52.4 bits (125), Expect = 8e-08
Identities = 15/96 (15%), Positives = 31/96 (32%), Gaps = 1/96 (1%)
Query: 268 EGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNS 327
G +VSL C ++ + + S A E+ K I +
Sbjct: 16 VGSSVSLECDFDRRECTELEGIRASLQKVENDTSLQSERATLLEEQLPLGKAL-FHIPSV 74
Query: 328 NIDDNGTFVCVAENQAGSTSSNYTIRIVLKEENVEV 363
+ D+G + C+ A T+++ ++
Sbjct: 75 QVRDSGQYRCLVICGAAWDYKYLTVKVKASYMRIDT 110
Score = 48.5 bits (115), Expect = 1e-06
Identities = 23/101 (22%), Positives = 36/101 (35%), Gaps = 12/101 (11%)
Query: 254 EPQITPSTFYLEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEE 313
+ T LE+ V L C+ P A+++W N S+ A+ SH T E
Sbjct: 103 ASYMRIDTRILEVPGTGEVQLTCQARGYPLAEVSWQ-------NVSVPANTSHIR--TPE 153
Query: 314 GTEIKKSELLIYNSNIDDNGTFVCVAENQAGSTSSNYTIRI 354
G S L + + F C+ N ++ I
Sbjct: 154 GLYQVTSVLRLKPQ---PSRNFSCMFWNAHMKELTSAIIDP 191
>2fbo_J V1V2;, variable region-containing chitin-binding protein 3;
immunoglobulin, VCBP, V-type, V SET, immune system;
1.85A {Branchiostoma floridae}
Length = 250
Score = 53.0 bits (126), Expect = 9e-08
Identities = 18/113 (15%), Positives = 37/113 (32%), Gaps = 13/113 (11%)
Query: 255 PQITPSTFYLEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEG 314
+ +++ EG ++++ C + A +TW +N + + G
Sbjct: 137 NVHVSTAEVVQVDEGNDITMTCPCTDCANANVTWYTGPTFFENYETG-TYQPLANKNQFG 195
Query: 315 TEIKKSE------------LLIYNSNIDDNGTFVCVAENQAGSTSSNYTIRIV 355
SE L+I + I D G C G ++ + I+
Sbjct: 196 ITWFSSEIAGRASFSGARNLVIRAAKITDAGRVWCELATGQGELDADRSSTIL 248
Score = 38.7 bits (89), Expect = 0.004
Identities = 14/114 (12%), Positives = 33/114 (28%), Gaps = 22/114 (19%)
Query: 255 PQITPSTFYLEIQEGKNVSLLCKV---SAIPEAKITWLFDGVPIQNESM-----SASESH 306
+ + +E+ G V L C + I+WL P ++ + +
Sbjct: 3 MTVRTTHTEVEVHAGGTVELPCSYQLANDTQPPVISWLKGASPDRSTKVFKGNYNWQGEG 62
Query: 307 AVYSTEEGTEIKKSE--------------LLIYNSNIDDNGTFVCVAENQAGST 346
+ + + + L + + + D G + C + T
Sbjct: 63 LGFVESDSYKESFGDFLGRASVANLAAPTLRLTHVHPQDGGRYWCQVAQWSIRT 116
>2edn_A Myosin-binding protein C, fast-type; beta-sandwich, IG-fold, fast
MYBP-C, C-protein, skeletal muscle fast isoform,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 118
Score = 49.8 bits (118), Expect = 1e-07
Identities = 18/94 (19%), Positives = 36/94 (38%), Gaps = 4/94 (4%)
Query: 264 LEIQEGKNVSLLCKVSAIPEAK---ITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKS 320
+ ++ GK+ ++ KV+ I W F G ++ S S + S + +
Sbjct: 22 VSVETGKDAVVVAKVNGKELPDKPTIKW-FKGKWLELGSKSGARFSFKESHNSASNVYTV 80
Query: 321 ELLIYNSNIDDNGTFVCVAENQAGSTSSNYTIRI 354
EL I + D G + + + S + I +
Sbjct: 81 ELHIGKVVLGDRGYYRLEVKAKDTCDSCGFNIDV 114
>2oz4_A Intercellular adhesion molecule 1; IGSF domain, structural
plasticity, cell-surface dimerizatio adhesion; HET: NAG
FUC; 2.70A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 b.1.1.4
PDB: 1p53_A*
Length = 265
Score = 52.4 bits (125), Expect = 2e-07
Identities = 14/102 (13%), Positives = 27/102 (26%), Gaps = 25/102 (24%)
Query: 255 PQITPSTF--YLEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTE 312
P++ E + +C+ P ++ L DG
Sbjct: 184 PRLDERDCPGNWTWPENSQQTPMCQAWGNPLPELKCLKDGTFPL---------------- 227
Query: 313 EGTEIKKSELLIYNSNIDDNGTFVCVAENQAGSTSSNYTIRI 354
D GT++C A + G + T+ +
Sbjct: 228 -------PIGESVTVTRDLEGTYLCRARSTQGEVTREVTVNV 262
Score = 41.2 bits (96), Expect = 7e-04
Identities = 17/102 (16%), Positives = 32/102 (31%), Gaps = 22/102 (21%)
Query: 255 PQITPSTFYLEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEG 314
P E+ EG V++ C+ + +GVP Q
Sbjct: 99 PAPNVILTKPEVSEGTEVTVKCEAH----PRAKVTLNGVPAQ------------------ 136
Query: 315 TEIKKSELLIYNSNIDDNGTFVCVAENQAGSTSSNYTIRIVL 356
+++LL+ + D+ +F C A + + L
Sbjct: 137 PLGPRAQLLLKATPEDNGRSFSCSATLEVAGQLIHKNQTREL 178
Score = 40.8 bits (95), Expect = 9e-04
Identities = 10/103 (9%), Positives = 26/103 (25%), Gaps = 17/103 (16%)
Query: 255 PQITPSTFYLEIQEGKNVSLLCKVSAI---PEAKITWLFDGVPIQNESMSASESHAVYST 311
PQ+ ++ +++C + + EA++ + T
Sbjct: 7 PQLVSPR---VLEVDTQGTVVCSLDGLFPVSEAQVHLALGDQRLNPTV-----------T 52
Query: 312 EEGTEIKKSELLIYNSNIDDNGTFVCVAENQAGSTSSNYTIRI 354
+ + + C S + T+ I
Sbjct: 53 YGNDSFSAKASVSVTAEDEGTQRLTCAVILGNQSQETLQTVTI 95
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich
RE receptor-like kinases, leucine-rich repeat; HET: NAG
BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A*
3rj0_A*
Length = 768
Score = 53.8 bits (130), Expect = 2e-07
Identities = 34/136 (25%), Positives = 50/136 (36%), Gaps = 9/136 (6%)
Query: 74 LVNLQKIYLSRCRIS-VIDSKAFRGLTNLVDLDFSHNVLQ-TVPSDTFPDYPSLMKLTLS 131
LQ + +S ++S S+A T L L+ S N +P SL L+L+
Sbjct: 222 CSALQHLDISGNKLSGDF-SRAISTCTELKLLNISSNQFVGPIPPLPL---KSLQYLSLA 277
Query: 132 GNPIK-QIKTGAFQPLSYLVTLELSKCGIEVIEDAAFVGLDSLEWLKLDNNKIT-TISGS 189
N +I L L+LS F LE L L +N + +
Sbjct: 278 ENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMD 337
Query: 190 NILP-TGLHGIDLHHN 204
+L GL +DL N
Sbjct: 338 TLLKMRGLKVLDLSFN 353
Score = 52.6 bits (127), Expect = 4e-07
Identities = 29/180 (16%), Positives = 50/180 (27%), Gaps = 30/180 (16%)
Query: 52 QVLDYTGNNLKTLHNEKFQKMGLVNLQKIYLSRCRIS-VIDSKAFRGLTNLVDLDFSHNV 110
LD + N+L L+ + +S + L +L LD S N
Sbjct: 103 TSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANS 162
Query: 111 LQ-TVPSD--TFPDYPSLMKLTLSGN------PIKQIK------------TG---AFQPL 146
+ L L +SGN + + +
Sbjct: 163 ISGANVVGWVLSDGCGELKHLAISGNKISGDVDVSRCVNLEFLDVSSNNFSTGIPFLGDC 222
Query: 147 SYLVTLELSKCGIE-VIEDAAFVGLDSLEWLKLDNNKIT-TISGSNILPTGLHGIDLHHN 204
S L L++S + A L+ L + +N+ I + L + L N
Sbjct: 223 SALQHLDISGNKLSGDF-SRAISTCTELKLLNISSNQFVGPIPPLPL--KSLQYLSLAEN 279
Score = 51.1 bits (123), Expect = 1e-06
Identities = 38/172 (22%), Positives = 60/172 (34%), Gaps = 27/172 (15%)
Query: 47 MDPNTQVLDYTGNNLK-TLHNEKFQKMGLVNLQKIYLSRCRIS-VIDSKAFRGLTNLVDL 104
+ + LD + NN + + LQ++YL + I + LV L
Sbjct: 366 LSASLLTLDLSSNNFSGPILPN-LCQNPKNTLQELYLQNNGFTGKI-PPTLSNCSELVSL 423
Query: 105 DFSHNVLQ-TVPSDTFPDYPSLMKLTLSGNPIKQIKTGAFQP----LSYLVTLELSKCGI 159
S N L T+PS L L L N + G + L TL L +
Sbjct: 424 HLSFNYLSGTIPSS-LGSLSKLRDLKLWLNML----EGEIPQELMYVKTLETLILDFNDL 478
Query: 160 E-VIEDAAFVGLDSLEWLKLDNNKITTISGSNILP------TGLHGIDLHHN 204
I + +L W+ L NN+ ++G +P L + L +N
Sbjct: 479 TGEI-PSGLSNCTNLNWISLSNNR---LTGE--IPKWIGRLENLAILKLSNN 524
Score = 49.9 bits (120), Expect = 3e-06
Identities = 36/197 (18%), Positives = 61/197 (30%), Gaps = 57/197 (28%)
Query: 20 TSCICKWKGGKQTVECVNKSLITVVEGMDPNTQVLDYTGNNLKTLHNEKFQKMGLVNLQK 79
+ C + G V C + + +D + L +
Sbjct: 37 KNP-CTFDG----VTCRDDKVT-----------SIDLSSKPLNVGFSA------------ 68
Query: 80 IYLSRCRISVIDSKAFRGLTNLVDLDFSHNVLQ-TVPSDTFPDYPSLMKLTLSGNPIKQI 138
S + LT L L S++ + +V F SL L LS N +
Sbjct: 69 -----------VSSSLLSLTGLESLFLSNSHINGSVSG--FKCSASLTSLDLSRNSL--- 112
Query: 139 KTGAFQP------LSYLVTLELSKCGIE-VIEDAAFVGLDSLEWLKLDNNKIT-TISGSN 190
+G S L L +S ++ + + + L+SLE L L N I+
Sbjct: 113 -SGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGW 171
Query: 191 ILPTGLHG---IDLHHN 204
+L G + + N
Sbjct: 172 VLSDGCGELKHLAISGN 188
Score = 48.8 bits (117), Expect = 7e-06
Identities = 31/137 (22%), Positives = 47/137 (34%), Gaps = 31/137 (22%)
Query: 74 LVNLQKIYLSRCRIS-VIDSKAFRGLTNLVDLDFSHNVLQTVPSDTFPDYPSLMKLTLSG 132
L+ + LS S + + L LD S N S P SL L+ S
Sbjct: 317 CSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEF----SGELP--ESLTNLSAS- 369
Query: 133 NPIKQIKTGAFQPLSYLVTLELSKCGI--EVIEDAAFVGLDSLEWLKLDNNKIT-TISGS 189
L+TL+LS ++ + ++L+ L L NN T I +
Sbjct: 370 ----------------LLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPT 413
Query: 190 --NILPTGLHGIDLHHN 204
N + L + L N
Sbjct: 414 LSNC--SELVSLHLSFN 428
Score = 39.1 bits (92), Expect = 0.005
Identities = 27/161 (16%), Positives = 51/161 (31%), Gaps = 19/161 (11%)
Query: 52 QVLDYTGNNL-----KTLHNEKFQKMGLVNLQKIYLSRCRIS-VIDSKAFRGLTNLVDLD 105
+ + N L K + L NL + LS S I +L+ LD
Sbjct: 493 NWISLSNNRLTGEIPKWIGR-------LENLAILKLSNNSFSGNI-PAELGDCRSLIWLD 544
Query: 106 FSHNVLQ-TVPSDTFPDYPSLMKLTLSGNPIKQIKTGAFQPLSYLVTLELSKCGIEVIED 164
+ N+ T+P+ F + ++G IK + + L GI +
Sbjct: 545 LNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQ- 603
Query: 165 AAFVGLDSLEWLKLDNNKIT-TISGSNILPTGLHGIDLHHN 204
L + + + S + + +D+ +N
Sbjct: 604 --LNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYN 642
Score = 34.1 bits (79), Expect = 0.22
Identities = 27/120 (22%), Positives = 39/120 (32%), Gaps = 10/120 (8%)
Query: 41 ITVVEGMDPNTQVLDYTGNNLKTLHNEKFQKMGLVNLQKIYLSRCRISVIDSKAFRGLTN 100
V D + GN L+ Q L ++ S F +
Sbjct: 574 RYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGS 633
Query: 101 LVDLDFSHNVLQ-TVPSDTFPDYPSLMKLTLSGNPIKQIKTG----AFQPLSYLVTLELS 155
++ LD S+N+L +P P L L L N I +G L L L+LS
Sbjct: 634 MMFLDMSYNMLSGYIPK-EIGSMPYLFILNLGHNDI----SGSIPDEVGDLRGLNILDLS 688
Score = 30.6 bits (70), Expect = 2.4
Identities = 35/164 (21%), Positives = 54/164 (32%), Gaps = 21/164 (12%)
Query: 52 QVLDYTGNNLKTLHNEKFQKMGLVNLQKIYLSRCRISVIDSKAFRGLTNLVDLDFSHNVL 111
Q N + + G+ + I S+ L+ + + V
Sbjct: 561 QSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVY 620
Query: 112 QTVPSDTFPDYPSLMKLTLSGNPIKQIKTGA----FQPLSYLVTLELSK----CGIEVIE 163
S TF + S+M L +S N + +G + YL L L I
Sbjct: 621 GGHTSPTFDNNGSMMFLDMSYNML----SGYIPKEIGSMPYLFILNLGHNDISGSI---- 672
Query: 164 DAAFVGLDSLEWLKLDNNKIT-TI--SGSNILPTGLHGIDLHHN 204
L L L L +NK+ I + S + T L IDL +N
Sbjct: 673 PDEVGDLRGLNILDLSSNKLDGRIPQAMSAL--TMLTEIDLSNN 714
>1hng_A CD2; T lymphocyte adhesion glycoprotein; 2.80A {Rattus rattus}
SCOP: b.1.1.1 b.1.1.3
Length = 176
Score = 51.1 bits (122), Expect = 2e-07
Identities = 10/86 (11%), Positives = 23/86 (26%), Gaps = 21/86 (24%)
Query: 268 EGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNS 327
E N +L C+V + ++ +++ + +
Sbjct: 109 ECSNATLTCEVLEGTDVELKLYQGKEHLRSL---------------------RQKTMSYQ 147
Query: 328 NIDDNGTFVCVAENQAGSTSSNYTIR 353
+ F C A N+ S +
Sbjct: 148 WTNLRAPFKCKAVNRVSQESEMEVVN 173
Score = 41.5 bits (97), Expect = 3e-04
Identities = 16/97 (16%), Positives = 32/97 (32%), Gaps = 11/97 (11%)
Query: 268 EGKNVSLLCKVSAIPEAK--ITWLFDGVPI---QNESMSASESHAVYSTEEGTEIKKSEL 322
G ++L + + + W + + + +S A G L
Sbjct: 10 LGHGINLNIPNFQMTDDIDEVRWERGSTLVAEFKRKMKPFLKSGAFEILANGD------L 63
Query: 323 LIYNSNIDDNGTFVCVAENQAGSTSSNYTIRIVLKEE 359
I N DD+GT+ + G+ N + + + E
Sbjct: 64 KIKNLTRDDSGTYNVTVYSTNGTRILNKALDLRILEM 100
>2dru_A Chimera of CD48 antigen and T-cell surface antige; CD2 binding
domain of CD48, immune system; HET: NAG; 2.60A {Rattus
norvegicus}
Length = 180
Score = 51.0 bits (122), Expect = 2e-07
Identities = 13/109 (11%), Positives = 30/109 (27%), Gaps = 29/109 (26%)
Query: 245 QLSIDELACEPQITPSTFYLEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASE 304
+ + E+ +P I E N +L C+V + ++ +++
Sbjct: 99 TMEVYEMVSKPMIY--------WECSNATLTCEVLEGTDVELKLYQGKEHLRSLR----- 145
Query: 305 SHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCVAENQAGSTSSNYTIR 353
+ + + F C A N+ S +
Sbjct: 146 ----------------QKTMSYQWTNLRAPFKCKAVNRVSQESEMEVVN 178
>1wio_A CD4, T-cell surface glycoprotein CD4; immunoglobulin fold,
transmembrane, MHC lipoprotein, polymorphism; 3.90A
{Homo sapiens} SCOP: b.1.1.1 b.1.1.1 b.1.1.3 b.1.1.3
PDB: 1wip_A 1wiq_A 3t0e_E
Length = 363
Score = 52.5 bits (125), Expect = 3e-07
Identities = 16/116 (13%), Positives = 31/116 (26%), Gaps = 29/116 (25%)
Query: 265 EIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLI 324
+ +G++++L + + L +
Sbjct: 107 HLLQGQSLTLTLESPPGSSPSVQCRSPRGKNIQGG--------------------KTLSV 146
Query: 325 YNSNIDDNGTFVCVAENQAGSTSSNYTI---------RIVLKEENVEVVTVFPLEY 371
+ D+GT+ C I IV K+E +V FPL +
Sbjct: 147 SQLELQDSGTWTCTVLQNQKKVEFKIDIVVLAFQKASSIVYKKEGEQVEFSFPLAF 202
Score = 51.7 bits (123), Expect = 4e-07
Identities = 16/104 (15%), Positives = 35/104 (33%), Gaps = 7/104 (6%)
Query: 267 QEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKS------ 320
++G V L C S + W + + + + + ++S
Sbjct: 7 KKGDTVELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQGN 66
Query: 321 -ELLIYNSNIDDNGTFVCVAENQAGSTSSNYTIRIVLKEENVEV 363
L+I N I+D+ T++C E+Q + ++
Sbjct: 67 FPLIIKNLKIEDSDTYICEVEDQKEEVQLLVFGLTANSDTHLLQ 110
Score = 34.0 bits (77), Expect = 0.18
Identities = 12/125 (9%), Positives = 33/125 (26%), Gaps = 8/125 (6%)
Query: 231 ICSVPPRLSSVTIKQLSIDELACEPQITPSTFYLEIQEGKNVSLLCKVSAIPEAKITWLF 290
+ + S V K+ E + T + + + ++ ++ IT+
Sbjct: 176 VLAFQKASSIVYKKEGEQVEFSFPLAFTVEK----LTGSGELWWQAERASSSKSWITFDL 231
Query: 291 DGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCVAENQAGSTSSNY 350
+ S+ + + L +G E + G
Sbjct: 232 KN---KEVSVKRVTQDPKLQMGKKLPLH-LTLPQALPQYAGSGNLTLALEAKTGKLHQEV 287
Query: 351 TIRIV 355
+ ++
Sbjct: 288 NLVVM 292
Score = 31.7 bits (71), Expect = 0.86
Identities = 8/88 (9%), Positives = 20/88 (22%), Gaps = 24/88 (27%)
Query: 268 EGKNVSLLCKVS--AIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIY 325
+L C+V P+ ++ + +
Sbjct: 295 TQLQKNLTCEVWGPTSPKLMLSLKLENKEAKVSK---------------------REKAV 333
Query: 326 NSNIDDNGTFVCVAENQAG-STSSNYTI 352
+ G + C+ + SN +
Sbjct: 334 WVLNPEAGMWQCLLSDSGQVLLESNIKV 361
>1z7z_I Intercellular adhesion molecule-1; ICAM-1,kilifi,CD54,human
coxsackievirus A21, cryo-electron
microscopy,virus-receptor complex, icosahedral virus;
HET: NAG NDG; 8.00A {Homo sapiens} SCOP: b.1.1.3 b.1.1.3
b.1.1.4 b.1.1.4 b.1.1.4
Length = 450
Score = 51.8 bits (123), Expect = 5e-07
Identities = 17/102 (16%), Positives = 31/102 (30%), Gaps = 25/102 (24%)
Query: 255 PQITPSTF--YLEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTE 312
P++ E + +C+ P ++ L DG + ES V
Sbjct: 369 PRLDERDCPGNWTWPENSQQTPMCQAWGNPLPELKCLKDGTF----PLPIGESVTV---- 420
Query: 313 EGTEIKKSELLIYNSNIDDNGTFVCVAENQAGSTSSNYTIRI 354
D GT++C A + G + T+ +
Sbjct: 421 ---------------TRDLEGTYLCRARSTQGEVTREVTVNV 447
Score = 45.2 bits (106), Expect = 7e-05
Identities = 11/103 (10%), Positives = 23/103 (22%), Gaps = 16/103 (15%)
Query: 255 PQITPSTFYLEIQEGKNVSLLCKVSA---IPEAKITWLFDGVPIQNESMSASESHAVYST 311
++ + GKN++L C+V + L ++ E +
Sbjct: 87 ERVELAPLPSWQPVGKNLTLRCQVEGGAPRANLTVVLLRGEKELKREPAVGEPA------ 140
Query: 312 EEGTEIKKSELLIYNSNIDDNGTFVCVAENQAGSTSSNYTIRI 354
+ + F C E
Sbjct: 141 -------EVTTTVLVRRDHHGANFSCRTELDLRPQGLELFENT 176
Score = 44.1 bits (103), Expect = 2e-04
Identities = 13/102 (12%), Positives = 28/102 (27%), Gaps = 22/102 (21%)
Query: 255 PQITPSTFYLEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEG 314
P E+ EG V++ C+ + + +
Sbjct: 284 PAPNVILTKPEVSEGTEVTVKCEAHPRAKVTLNGVPAQPLGPR----------------- 326
Query: 315 TEIKKSELLIYNSNIDDNGTFVCVAENQAGSTSSNYTIRIVL 356
++LL+ + D+ +F C A + + L
Sbjct: 327 -----AQLLLKATPEDNGRSFSCSATLEVAGQLIHKNQTREL 363
Score = 43.3 bits (101), Expect = 2e-04
Identities = 14/110 (12%), Positives = 36/110 (32%), Gaps = 19/110 (17%)
Query: 254 EPQITPSTFYLEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEE 313
+ ++PS + + G +V + C S + +E
Sbjct: 1 QTSVSPSK--VILPRGGSVLVTCSTSCDQPMLLGI-----------------ETPLPKKE 41
Query: 314 GTEIKKSELLIYNSNIDDNGTFVCVAENQAGSTSSNYTIRIVLKEENVEV 363
+ + SN+ ++ +C + G +++ + + E VE+
Sbjct: 42 LLLPGNNRKVYELSNVQEDSQPMCYSNCPDGQSTAKTFLTVYWTPERVEL 91
Score = 36.4 bits (83), Expect = 0.034
Identities = 15/119 (12%), Positives = 30/119 (25%), Gaps = 16/119 (13%)
Query: 239 SSVTIKQLSIDELACEPQITPSTFYLEIQEGKNVSLLCKVSAI---PEAKITWLFDGVPI 295
++ QL L P S LE +++C + + EA++ +
Sbjct: 175 NTSAPYQLQTFVLPATPPQLVSPRVLE--VDTQGTVVCSLDGLFPVSEAQVHLALGDQRL 232
Query: 296 QNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCVAENQAGSTSSNYTIRI 354
T + + + C S + T+ I
Sbjct: 233 NPTV-----------TYGNDSFSAKASVSVTAEDEGTQRLTCAVILGNQSQETLQTVTI 280
>3eow_R Poliovirus receptor; immunoglobulin super family, alternative
splicing, cell adhesion, cell membrane, glycoprotein,
HOST-virus interaction; 3.50A {Homo sapiens} PDB: 3uro_R
3epc_R* 3epd_R* 3epf_R*
Length = 221
Score = 50.1 bits (119), Expect = 5e-07
Identities = 17/101 (16%), Positives = 32/101 (31%), Gaps = 8/101 (7%)
Query: 255 PQITPSTFYLEIQEGKNVSLLCKVS-AIPEAKITWLFDGVPIQNESMSASESHAVYSTEE 313
PQ T +++ C + P A+ITW D + S +
Sbjct: 117 PQNTAEVQKVQLTGEPVPMARCVSTGGRPPAQITWHSDLGGMPQTSQVPGFLSGTVTVT- 175
Query: 314 GTEIKKSELLIYNSNIDDNGTFVCVAENQAGSTSSNYTIRI 354
S ++ S+ D C E+++ T+ +
Sbjct: 176 ------SLWILVPSSQVDGKQVTCKVEHESFEKPQLLTVSL 210
Score = 32.7 bits (74), Expect = 0.27
Identities = 20/102 (19%), Positives = 38/102 (37%), Gaps = 13/102 (12%)
Query: 268 EGKNVSLLCKVSAIPEA-----KITWLFDG--------VPIQNESMSASESHAVYSTEEG 314
G +V+L C + ++TW G Q S S S+ + G
Sbjct: 13 LGDSVTLPCYLQVPNMEVTHVSQLTWARHGESGSMAVFHQTQGPSYSESKRLEFVAARLG 72
Query: 315 TEIKKSELLIYNSNIDDNGTFVCVAENQAGSTSSNYTIRIVL 356
E++ + L ++ ++D G++ C+ + S VL
Sbjct: 73 AELRDASLRMFGLRVEDEGSYTCLFVTFPQGSRSVDIWLRVL 114
>3r4d_A CEA-related cell adhesion molecule 1, isoform 1/2; immunoglobulin,
beta-sandwich, mceacam1A - immunoglobulin FO spike NTD -
galectin-like beta-sandwich fold; HET: NAG; 3.10A {Mus
musculus} PDB: 1l6z_A*
Length = 208
Score = 49.7 bits (118), Expect = 7e-07
Identities = 24/119 (20%), Positives = 38/119 (31%), Gaps = 15/119 (12%)
Query: 232 CSVPPRLSSVTIKQLSIDELACEPQITPSTFYLEIQEGKNVSLLCKVSAIPEAKITWLFD 291
+ T + Q ++E +V+L C + A I WLF+
Sbjct: 88 LDMTDENYRRTQATVRFHVHQPVTQPFLQVTNTTVKELDSVTLTCLSND-IGANIQWLFN 146
Query: 292 GVPIQ-NESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCVAENQAGSTSSN 349
+Q E M+ S++ S L I +D G + C N SN
Sbjct: 147 SQSLQLTERMTLSQN-------------NSILRIDPIKREDAGEYQCEISNPVSVRRSN 192
Score = 46.6 bits (110), Expect = 8e-06
Identities = 16/118 (13%), Positives = 31/118 (26%), Gaps = 8/118 (6%)
Query: 256 QITPSTFYLEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGT 315
++T ++ E NV LL + W ++ + A G
Sbjct: 1 EVTIEAVPPQVAEDNNVLLLVHNLPLALGAFAWYKGNTTAIDKEI-ARFVPNSNMNFTGQ 59
Query: 316 EIKKSE-------LLIYNSNIDDNGTFVCVAENQAGSTSSNYTIRIVLKEENVEVVTV 366
E LL + D G + ++ + V + + V
Sbjct: 60 AYSGREIIYSNGSLLFQMITMKDMGVYTLDMTDENYRRTQATVRFHVHQPVTQPFLQV 117
>2pet_A Lutheran blood group glycoprotein; immunoglobulin superfamily.,
cell adhesion; 1.70A {Homo sapiens} PDB: 2pf6_A
Length = 231
Score = 49.8 bits (118), Expect = 8e-07
Identities = 20/115 (17%), Positives = 38/115 (33%), Gaps = 8/115 (6%)
Query: 254 EPQITPSTFYLEI-QEGKNVSLLCKVS-AIPEAKITWLFDGVPIQNESMSASESHAVYST 311
+++P+ L + ++ C P KITW +G ++ E + T
Sbjct: 118 ATEVSPNKGTLSVMEDSAQEIATCNSRNGNPAPKITWYRNGQRLEVPVEMNPEGYMTSRT 177
Query: 312 EE---GTEIKKSELLIYNSNIDDNGTFVCVAENQAGSTSSNYTIRIVLKEENVEV 363
G S L + D + +F C A S R+ ++ +
Sbjct: 178 VREASGLLSLTSTLYLRLRKDDRDASFHCAAHY---SLPEGRHGRLDSPTFHLTL 229
Score = 35.9 bits (82), Expect = 0.030
Identities = 22/121 (18%), Positives = 41/121 (33%), Gaps = 12/121 (9%)
Query: 264 LEIQEGKNVSLLCKVSAIPEAK-ITWLF---DGVPIQNESMSASESHAVYSTEEGTEIK- 318
+E+ GK+V L C + + + W G + S S + +
Sbjct: 10 VEVMRGKSVILDCTPTGTHDHYMLEWFLTDRSGARPRLASAEMQGSELQVTMHDTRGRSP 69
Query: 319 ------KSELLIYNSNIDDNGTFVC-VAENQAGSTSSNYTIRIVLKEENVEVVTVFPLEY 371
+ L++ + + D +VC V AG+ + + + K E EV
Sbjct: 70 PYQLDSQGRLVLAEAQVGDERDYVCVVRAGAAGTAEATARLNVFAKPEATEVSPNKGTLS 129
Query: 372 V 372
V
Sbjct: 130 V 130
>1fnl_A Low affinity immunoglobulin gamma FC region receptor III-B; beta
sandwich, immunoglobulin-like, immune system receptor;
1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1e4j_A
1e4k_C* 1t83_C* 1t89_C* 3ay4_C*
Length = 175
Score = 48.3 bits (115), Expect = 1e-06
Identities = 16/94 (17%), Positives = 34/94 (36%), Gaps = 20/94 (21%)
Query: 266 IQEGKNVSLLCKV-SAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLI 324
+E + L C K+T+L +G + + S+ I
Sbjct: 100 FKEEDPIHLRCHSWKNTALHKVTYLQNGKDRKYFHHN------------------SDFHI 141
Query: 325 YNSNIDDNGTFVCVAENQAGSTSSNYTIRIVLKE 358
+ + D+G++ C + + SS T+ I + +
Sbjct: 142 PKATLKDSGSYFCRGLVGSKNVSSE-TVNITITQ 174
Score = 38.3 bits (89), Expect = 0.003
Identities = 14/94 (14%), Positives = 30/94 (31%), Gaps = 21/94 (22%)
Query: 255 PQITPSTFYLEIQEGKNVSLLCKVSAIPE-AKITWLFDGVPIQNESMSASESHAVYSTEE 313
+ + + E +V+L C+ + PE W + I +++
Sbjct: 8 AVVFLEPQWYSVLEKDSVTLKCQGAYSPEDNSTQWFHNESLISSQA-------------- 53
Query: 314 GTEIKKSELLIYNSNIDDNGTFVCVAENQAGSTS 347
S I + ++D+G + C S
Sbjct: 54 ------SSYFIDAATVNDSGEYRCQTNLSTLSDP 81
>1f2q_A High affinity immunoglobulin epsilon receptor ALP subunit;
immunoglobulin fold, glycoprotein, IGE-binding Pro
immune system; HET: NAG MAN; 2.40A {Homo sapiens} SCOP:
b.1.1.4 b.1.1.4 PDB: 1j86_A* 1rpq_A* 2y7q_A* 1f6a_A*
1j88_A* 1j89_A* 1j87_A*
Length = 176
Score = 47.6 bits (113), Expect = 2e-06
Identities = 15/95 (15%), Positives = 33/95 (34%), Gaps = 20/95 (21%)
Query: 265 EIQEGKNVSLLCKVSA-IPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELL 323
+ EG+ + L C K+ + DG ++ + +
Sbjct: 96 VVMEGQPLFLRCHGWRNWDVYKVIYYKDGEALKYWYEN------------------HNIS 137
Query: 324 IYNSNIDDNGTFVCVAENQAGSTSSNYTIRIVLKE 358
I N+ ++D+GT+ C + S + I + +
Sbjct: 138 ITNATVEDSGTYYCTGKVWQLDYESE-PLNITVIK 171
Score = 43.3 bits (102), Expect = 7e-05
Identities = 18/94 (19%), Positives = 35/94 (37%), Gaps = 21/94 (22%)
Query: 255 PQITPSTFYLEIQEGKNVSLLCKVSAIPEA-KITWLFDGVPIQNESMSASESHAVYSTEE 313
P+++ + + I +G+NV+L C + E W +G + +
Sbjct: 5 PKVSLNPPWNRIFKGENVTLTCNGNNFFEVSSTKWFHNGSLSEETN-------------- 50
Query: 314 GTEIKKSELLIYNSNIDDNGTFVCVAENQAGSTS 347
S L I N+ +D+G + C + S
Sbjct: 51 ------SSLNIVNAKFEDSGEYKCQHQQVNESEP 78
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 50.0 bits (119), Expect = 3e-06
Identities = 65/368 (17%), Positives = 110/368 (29%), Gaps = 144/368 (39%)
Query: 40 LITVVEGMDPNTQVLDY--TGNNLKTLHNEKFQKM-GL-VNLQKIYLSRCRISVIDS-KA 94
LI V Q+ Y T L E + G + Q + + I+ DS ++
Sbjct: 240 LIGV-------IQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVA-IAETDSWES 291
Query: 95 F-RGLTNLVDLDF-----SHNVLQTVPSDTFP-----DY-------PSLMKLTLSGNPIK 136
F + + + F + + P+ + P D PS M L++S +
Sbjct: 292 FFVSVRKAITVLFFIGVRCY---EAYPNTSLPPSILEDSLENNEGVPSPM-LSISNLTQE 347
Query: 137 QI-----KTGAFQPLSYLVTLELSKCGIEVIEDAAFVGLDSLEWLKLDNNKITTISGSNI 191
Q+ KT + P V + L V V +SG
Sbjct: 348 QVQDYVNKTNSHLPAGKQVEISL------VNGAKNLV-----------------VSGP-- 382
Query: 192 LPTGLHGIDLHHNPWTCDCLLIGLRRWLESTKTPMAID------------------PICS 233
P L+G L L K P +D P+ +
Sbjct: 383 -PQSLYG----------------LNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFLPV-A 424
Query: 234 VP---PRLSSVT---IKQLSIDELACEP---QITP--STFYLEIQEGKNVSLLCKVSA-I 281
P L + K L + ++ QI P TF +G + L +S I
Sbjct: 425 SPFHSHLLVPASDLINKDLVKNNVSFNAKDIQI-PVYDTF-----DGSD---LRVLSGSI 475
Query: 282 PEAKITWLFDGVPIQ-NESMSASESHAV--------------YSTEEGT---EIKKSELL 323
E + + +P++ + +H + + ++GT I L
Sbjct: 476 SERIVDCIIR-LPVKWETTTQFKATHILDFGPGGASGLGVLTHRNKDGTGVRVIVAGTL- 533
Query: 324 IYNSNIDD 331
+ N DD
Sbjct: 534 --DINPDD 539
Score = 42.0 bits (98), Expect = 0.001
Identities = 74/396 (18%), Positives = 115/396 (29%), Gaps = 143/396 (36%)
Query: 111 LQTVPSDTFPDYPSLMKLTLSGNPIKQIKTGAFQPLSYLVTLELSKCGIEVIEDAAFV-- 168
L+ D + Y L + + + + LS L+ DA V
Sbjct: 173 LR----DLYQTYHVL---------VGDLIKFSAETLSELIRTT---------LDAEKVFT 210
Query: 169 -GLDSLEWLKLDNNKITTISGSNILPTGLHGIDLHHNPWTCDCLLIGLRRWLESTKTP-- 225
GL+ LEWL NP + TP
Sbjct: 211 QGLNILEWL--------------------------ENP----------------SNTPDK 228
Query: 226 --MAIDPICSVPPRLSSVTIKQLSIDELACEPQ-ITPSTFYLEIQ----EGKNVSLLCKV 278
+ PI S P L V QL+ + + TP ++ + + V
Sbjct: 229 DYLLSIPI-SCP--LIGVI--QLAHYVVTAKLLGFTPGELRSYLKGATGHSQGL-----V 278
Query: 279 SAIPEAK--------------ITWLF-DGVPIQNE-SMSASESHAVYSTEEGTEIKKSEL 322
+A+ A+ IT LF GV ++ + + E E S +
Sbjct: 279 TAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPM 338
Query: 323 L-IYNSNIDDNGTFVCVAE-NQAGSTSSNYTIRIVLK--EENVEVVTVFPLEYVLIVSGI 378
L I SN+ V + N + I L +N+ VV+ P
Sbjct: 339 LSI--SNLTQEQVQDYVNKTNSHLPAGK--QVEISLVNGAKNL-VVSGPPQ--------- 384
Query: 379 ISVCSLVLIFLLVLCFLCFRRKKKKLKKKDESDKNVNGSNENVVKNLR----ESPKYTS- 433
S+ L L RK K D+S + S + + R SP ++
Sbjct: 385 -SLYGLNLTL----------RKAKAPSGLDQS--RIPFSERKLKFSNRFLPVASPFHSHL 431
Query: 434 -VNATSATCMDKVNGGYIIADGHNDMML--YATDSG 466
V A+ D V D+ + Y T G
Sbjct: 432 LVPASDLINKDLVKNNVSFN--AKDIQIPVYDTFDG 465
Score = 41.2 bits (96), Expect = 0.001
Identities = 100/586 (17%), Positives = 161/586 (27%), Gaps = 228/586 (38%)
Query: 90 IDSKAFRGLTNLVDLDFSHNVLQT---VPSDTFPDYPSLMKLTLSGNPIKQIKTGAF--- 143
+D+ + R LT SH L+ VP+ +F L + P T F
Sbjct: 1 MDAYSTRPLT------LSHGSLEHVLLVPTASFFIASQLQEQFNKILPEP---TEGFAAD 51
Query: 144 -QPLSYLVTLELSKCGIEVIEDAAFVG-LDSLEWLKLDNNKITTISGSNILPTG------ 195
+P + EL F+G + SL ++ +K+ +L
Sbjct: 52 DEPTT---PAELV---------GKFLGYVSSL----VEPSKVGQFD--QVLNLCLTEFEN 93
Query: 196 --LHGIDLHHNPWTCDCLLIGLRRWLESTKTPMAIDPICSVPPRLSSVTIKQ-LSIDELA 252
L G D+H L L L+ T + + IK ++ +A
Sbjct: 94 CYLEGNDIH-------ALAAKL---LQENDTT---------LVKTKEL-IKNYITARIMA 133
Query: 253 CEPQITPSTFYLEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQ-NESMSASESHAVYST 311
P S S L + A++ +F G Q N E +Y T
Sbjct: 134 KRPFDKKSN-----------SALFRAVGEGNAQLVAIFGG---QGNTDDYFEELRDLYQT 179
Query: 312 EEGTEIKKSELLIYNSNIDDNGTFVCVAEN-------QAGSTSSNYT----IRIVLKEEN 360
Y+ + D + + +T I L+ +
Sbjct: 180 -------------YHVLVGD---LIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPS 223
Query: 361 VEVVTVFPLEYVLIVSGIISVCSLVLIFLLVLC-FLCFRRKKKKLKKKDESDKNVNGSNE 419
P + L+ I S LI ++ L ++ + + G
Sbjct: 224 NT-----PDKDYLLSIPI----SCPLIGVIQLAHYVVTAK--------------LLGFT- 259
Query: 420 NVVKNLRESPKYTSVNAT---SATCMDKVNGGYIIADGHNDMMLYATDSG--ILVATNNM 474
LR K + ++ +A IA TDS V+
Sbjct: 260 --PGELRSYLKGATGHSQGLVTAVA---------IA---------ETDSWESFFVSVRKA 299
Query: 475 ------------NTYPSYSISYQIEQNPDLVNDAESVDKDRRAQGGEDTQDTQDKASEAA 522
YP+ S+ P ++ D+ + E S
Sbjct: 300 ITVLFFIGVRCYEAYPNTSLP------PSILEDSL--------ENNEGV------PSPML 339
Query: 523 SVQYSDSG---SQCQEWGNVCYNRMQPMQ---HIVLNNVYNQ------PAD-----IHLT 565
S+ S Q Q++ N N P I L N P + L
Sbjct: 340 SI----SNLTQEQVQDYVNKT-NSHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLR 394
Query: 566 PEK-----------FMDRDGYPVDFG---LP-KVPTHFPALVPATA 596
K F +R + F LP P H LVPA+
Sbjct: 395 KAKAPSGLDQSRIPFSER---KLKFSNRFLPVASPFHSHLLVPASD 437
>3shs_A HOC head outer capsid protein; immunoglobulin-like domain, phage
capsid decorative protein, interaction with bacteria;
1.95A {Enterobacteria phage RB49}
Length = 304
Score = 48.7 bits (115), Expect = 3e-06
Identities = 14/115 (12%), Positives = 37/115 (32%), Gaps = 24/115 (20%)
Query: 255 PQITPSTFYLEIQEGKNVSLLCKVSAIP----EAKITWLFDGVPIQNESMSASESHAVYS 310
++ + G +L V+ TW D P +N +
Sbjct: 3 FTVSIQSNKRCFLAGDGFTLTATVAGDEPLPSNLTYTWTKDDQPHENNT----------- 51
Query: 311 TEEGTEIKKSELLIYNSNIDDNGTFVCVAENQAGSTSSNYTIRIVLKEENVEVVT 365
+ L + ++ ++ G++ ++ TS + ++ + E + +T
Sbjct: 52 ---------ATLTVADATSENAGSYKVTVQDTDTMTSVESEVFLMEEAELIVNIT 97
Score = 40.2 bits (93), Expect = 0.002
Identities = 15/123 (12%), Positives = 32/123 (26%), Gaps = 29/123 (23%)
Query: 255 PQITPSTFYLEIQEGKNVSLLCKVSA--------IPEAKITWLFDGVPIQNESMSASESH 306
+ + +V L V E +W I
Sbjct: 93 IVNITEPQHFYVSSQTDVELHATVKFSGGKTPADNYELHYSWSKGEDVIDTTQ------- 145
Query: 307 AVYSTEEGTEIKKSELLIYNSNIDDNGTFVCVAENQAGSTSSNYTIRIVLKEENVEVVTV 366
++ I D NG + ++ ++++ + +I+L NV+ V
Sbjct: 146 --------------DITIQEFTADKNGVYTVKVWGESEDSAASASTKIMLATMNVDQDVV 191
Query: 367 FPL 369
Sbjct: 192 ESK 194
Score = 33.3 bits (75), Expect = 0.27
Identities = 22/118 (18%), Positives = 33/118 (27%), Gaps = 22/118 (18%)
Query: 258 TPSTFYLEIQEGKNVSLLCKVSAI----------PEAKITWLFDGVPIQNESMSASESHA 307
+ G +SL VS K W + ++ SE
Sbjct: 188 QDVVESKTVALGNEISLNYVVSEDIVGDSSGMPNLTIKYNWYLQREGQLSPTLIGSEVGE 247
Query: 308 VYSTEEGTEIKKSELLIYNSNIDDNGTFVCVAENQ----------AGSTSSNYTIRIV 355
T L ++ DD F CVA+ A STS ++ +V
Sbjct: 248 ALEGFSITP--DGHLFKESATYDDTAKFWCVAKLYQQIEDETVEVAASTSRKCSMEVV 303
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor
complex, structural genomics, protein structure
initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens}
SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Length = 461
Score = 49.2 bits (118), Expect = 4e-06
Identities = 32/199 (16%), Positives = 60/199 (30%), Gaps = 49/199 (24%)
Query: 36 VNKSLITVVEGMDPNTQVLDYTGNNLKTLHNEKFQKMGLVNLQKIYLSRCRISVID---- 91
++ + Q LD L + L Q + L C ++
Sbjct: 1 MSLDI-----------QSLDIQCEELSDARWAELLP-LLQQCQVVRLDDCGLTEARCKDI 48
Query: 92 SKAFRGLTNLVDLDFSHNVLQ-----------TVPSDTFPDYPSLMKLTLSGNPI----- 135
S A R L +L+ N L PS + KL+L +
Sbjct: 49 SSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPS------CKIQKLSLQNCCLTGAGC 102
Query: 136 KQIKTGAFQPLSYLVTLELSKC-----GIEVIEDAAFVGLDSLEWLKLDNNKITTISGSN 190
+ + + L L L LS G++++ + LE L+L+ ++ S
Sbjct: 103 GVL-SSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEP 161
Query: 191 ILP-----TGLHGIDLHHN 204
+ + + +N
Sbjct: 162 LASVLRAKPDFKELTVSNN 180
Score = 46.1 bits (110), Expect = 3e-05
Identities = 27/153 (17%), Positives = 44/153 (28%), Gaps = 23/153 (15%)
Query: 76 NLQKIYLSRCRISVID----SKAFRGLTNLVDLDFSHNVLQTVP----SDTFPDYP-SLM 126
L+K+ L C +S + R + +L S+N + D P L
Sbjct: 143 RLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLE 202
Query: 127 KLTLSGNPIK----QIKTGAFQPLSYLVTLELSKC-----GIEVIEDAAFVGLDSLEWLK 177
L L + + G + L L L G+ + L L
Sbjct: 203 ALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLW 262
Query: 178 LDNNKITTISGSNI---LP--TGLHGIDLHHNP 205
+ IT ++ L L + L N
Sbjct: 263 IWECGITAKGCGDLCRVLRAKESLKELSLAGNE 295
Score = 43.0 bits (102), Expect = 3e-04
Identities = 30/160 (18%), Positives = 54/160 (33%), Gaps = 26/160 (16%)
Query: 76 NLQKIYLSRCRISVIDSKAF-RGL----TNLVDLDFSHNVLQTVP----SDTFPDYPSLM 126
+L+++ L+ + ++ L L L S L+
Sbjct: 285 SLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLL 344
Query: 127 KLTLSGNPI-----KQIKTGAFQPLSYLVTLELSKCGI--EVIED--AAFVGLDSLEWLK 177
+L +S N + +++ G QP S L L L+ C + A + SL L
Sbjct: 345 ELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELD 404
Query: 178 LDNNKITTISGSNIL-------PTGLHGIDLHHNPWTCDC 210
L NN + +G L L + L+ W+ +
Sbjct: 405 LSNNCLGD-AGILQLVESVRQPGCLLEQLVLYDIYWSEEM 443
Score = 40.3 bits (95), Expect = 0.002
Identities = 22/153 (14%), Positives = 42/153 (27%), Gaps = 25/153 (16%)
Query: 76 NLQKIYLSRCRISVID----SKAFRGLTNLVDLDFSHNVLQ----TVPSDTFPDY-PSLM 126
L+ + L C ++ + +L +L N L L
Sbjct: 200 QLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLR 259
Query: 127 KLTLSGNPI-----KQIKTGAFQPLSYLVTLELSKC-----GIEVIEDAAFVGLDSLEWL 176
L + I + + L L L+ G ++ + LE L
Sbjct: 260 TLWIWECGITAKGCGDL-CRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESL 318
Query: 177 KLDNNKITTISGSNI---LP--TGLHGIDLHHN 204
+ + T S+ L L + + +N
Sbjct: 319 WVKSCSFTAACCSHFSSVLAQNRFLLELQISNN 351
Score = 32.6 bits (75), Expect = 0.46
Identities = 26/127 (20%), Positives = 44/127 (34%), Gaps = 22/127 (17%)
Query: 76 NLQKIYLSRCRISVIDSKAF-RGL----TNLVDLDFSHNVL-----QTVPSDTFPDYPSL 125
L ++ +S R+ + +GL + L L + + ++ + T SL
Sbjct: 342 FLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSL-AATLLANHSL 400
Query: 126 MKLTLSGNPI-----KQIKTGAFQPLSYLVTLELSKCGIEVIEDAAFVGLDSLEWLKLDN 180
+L LS N + Q+ QP L L L D L+ L+ D
Sbjct: 401 RELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSEE------MEDRLQALEKDK 454
Query: 181 NKITTIS 187
+ IS
Sbjct: 455 PSLRVIS 461
>3sgj_C Human FCG3A receptor; receptor complex, FC receptor, antibody,
immune system; HET: NAG BMA MAN FUC; 2.20A {Homo
sapiens} PDB: 3sgk_C*
Length = 204
Score = 46.8 bits (111), Expect = 7e-06
Identities = 18/116 (15%), Positives = 36/116 (31%), Gaps = 20/116 (17%)
Query: 255 PQITPSTFYLEIQEGKNVSLLCKV-SAIPEAKITWLFDGVPIQNESMSASESHAVYSTEE 313
+ +E + L C K+T+L +G + +
Sbjct: 89 GWLLLQAPRWVFKEEDPIHLRCHSWKNTALHKVTYLQNGKGRKYFHHN------------ 136
Query: 314 GTEIKKSELLIYNSNIDDNGTFVCVAENQAGSTSSN-YTIRIVLKEENVEVVTVFP 368
S+ I + + D+G++ C + + SS I I + + FP
Sbjct: 137 ------SDFYIPKATLKDSGSYFCRGLVGSKNVSSETVQITITQGLAVSTISSFFP 186
Score = 35.6 bits (82), Expect = 0.032
Identities = 16/94 (17%), Positives = 33/94 (35%), Gaps = 21/94 (22%)
Query: 255 PQITPSTFYLEIQEGKNVSLLCKVSAIPEAKIT-WLFDGVPIQNESMSASESHAVYSTEE 313
+ + + E +V+L C+ + PE + T W + I +++
Sbjct: 8 AVVFLEPQWYRVLEKDSVTLKCQGAYSPEDQSTQWFHNESLISSQA-------------- 53
Query: 314 GTEIKKSELLIYNSNIDDNGTFVCVAENQAGSTS 347
S I + +DD+G + C + S
Sbjct: 54 ------SSYFIDAATVDDSGEYRCQTQLSTLSDP 81
>2e6q_A Obscurin-like protein 1; IG-like domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 112
Score = 44.2 bits (104), Expect = 1e-05
Identities = 12/90 (13%), Positives = 33/90 (36%), Gaps = 3/90 (3%)
Query: 264 LEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELL 323
+++ +G++ +S + TW +G +++ + + L+
Sbjct: 18 VQVYDGEDAVFSLDLST--IIQGTWFLNGEELKSNEPEGQVEPGALRYRIEQKGLQHRLI 75
Query: 324 IYNSNIDDNGTFVCVAENQAGSTSSNYTIR 353
++ D+G V + S+ TI+
Sbjct: 76 LHAVKHQDSGALVGFSCPG-VQDSAALTIQ 104
>3mj6_A Junctional adhesion molecule-like; immunoglobulin tandem domain,
cell adhesion, cell junction, glycoprotein,
immunoglobulin domain, membrane; HET: NAG FUC; 2.19A
{Mus musculus} PDB: 3mj7_A* 3mj9_A*
Length = 268
Score = 46.8 bits (110), Expect = 1e-05
Identities = 16/129 (12%), Positives = 35/129 (27%), Gaps = 17/129 (13%)
Query: 257 ITPSTFYLEIQEGKNVSLLCKVSAIPE---AKITWLFDGVPIQNESMSASESHAVYSTEE 313
+ L ++ G + C + + E K+ W+F E S + S +
Sbjct: 121 LPEEPRDLRVRVGDTTQMRCSIQSTEEKRVTKVNWMFSSGSHTEEETVLSYDSNMRSGKF 180
Query: 314 GTEIKKSE--------------LLIYNSNIDDNGTFVCVAENQAGSTSSNYTIRIVLKEE 359
+ + + + D G + C + + +V E
Sbjct: 181 QSLGRFRNRVDLTGDISRNDGSIKLQTVKESDQGIYTCSIYVGKLESRKTIVLHVVQDEF 240
Query: 360 NVEVVTVFP 368
+ P
Sbjct: 241 QRTISPTPP 249
Score = 46.0 bits (108), Expect = 2e-05
Identities = 20/125 (16%), Positives = 41/125 (32%), Gaps = 13/125 (10%)
Query: 255 PQITPSTFYLEIQEGKNVSLLCKVSA---IPEAKITWLFDGVPIQNES----MSASESHA 307
P +T S+ L + G++V + C V ++ WLF ++ S
Sbjct: 6 PGLTVSSPQLRVHVGESVLMGCVVQRTEEKHVDRVDWLFSKDKDDASEYVLFYYSNLSVP 65
Query: 308 VYSTEEGTEIKKSE------LLIYNSNIDDNGTFVCVAENQAGSTSSNYTIRIVLKEENV 361
+ + + LL+ + D G + C + S + + + E
Sbjct: 66 TGRFQNRSHLVGDTFHNDGSLLLQDVQKADEGIYTCEIRLKNESMVMKKPVELWVLPEEP 125
Query: 362 EVVTV 366
+ V
Sbjct: 126 RDLRV 130
>1ccz_A Protein (CD58); LFA-3, glycoprotein; HET: NAG; 1.80A {Homo sapiens}
SCOP: b.1.1.1 b.1.1.3 PDB: 1ci5_A 1qa9_B
Length = 171
Score = 44.9 bits (106), Expect = 2e-05
Identities = 22/183 (12%), Positives = 49/183 (26%), Gaps = 38/183 (20%)
Query: 170 LDSLEWLKLDNNKITTISGSNILPTGLHGIDLHHNPWTCDCLLIGLRRWLESTKTPMAID 229
L + W K +K+ + S ++ + + + L E
Sbjct: 23 LKEVLWKK-QKDKVAELENSEFRAFSSFKNRVYLDTVSGSLTIYNLTSSDEDEYE----- 76
Query: 230 PICSVPPRLSSVTIKQLSIDELACEPQITPSTFYLEIQEGKNVSLLCKVSAIPEAKITWL 289
P ++ L + E+ +P I E N +L C+V + ++
Sbjct: 77 --MESPNITDTMKF-FLYVLEMVSKPMIY--------WECSNATLTCEVLEGTDVELKLY 125
Query: 290 FDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCVAENQAGSTSSN 349
+++ + + + F C A N+ S
Sbjct: 126 QGKEHLRSLR---------------------QKTMSYQWTNLRAPFKCKAVNRVSQESEM 164
Query: 350 YTI 352
+
Sbjct: 165 EVV 167
>1dr9_A B7-1 (CD80), T lymphocyte activation antigen; IG superfamily,
immune system; HET: NAG; 3.00A {Homo sapiens} SCOP:
b.1.1.1 b.1.1.3 PDB: 1i8l_A*
Length = 201
Score = 45.0 bits (106), Expect = 3e-05
Identities = 20/102 (19%), Positives = 37/102 (36%), Gaps = 9/102 (8%)
Query: 254 EPQITPSTFYLEIQEGKNVSLLCKVS-AIPEAKITWLFDGVPIQNESMSASESHAVYSTE 312
TPS EI ++C S PE ++WL +G + + + S+ E
Sbjct: 106 ADFPTPSISDFEIPTSNIRRIICSTSGGFPEPHLSWLENGEELNAINTTVSQ-----DPE 160
Query: 313 EGTEIKKSELLIYNSNIDDNGTFVCVAENQAGSTSSNYTIRI 354
S+L N+ N +F+C+ + + +
Sbjct: 161 TELYAVSSKLDF---NMTTNHSFMCLIKYGHLRVNQTFNWNT 199
Score = 30.7 bits (69), Expect = 1.1
Identities = 15/124 (12%), Positives = 32/124 (25%), Gaps = 10/124 (8%)
Query: 268 EGKNVSLLCKVSA----IPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSE-- 321
+ +L C + + + +I W + + Y T +
Sbjct: 8 VKEVATLSCGHNVSVEELAQTRIYWQKEKKMVLTMMSGDMNIWPEYK--NRTIFDITNNL 65
Query: 322 -LLIYNSNIDDNGTFVCVAENQAGSTSSNYT-IRIVLKEENVEVVTVFPLEYVLIVSGII 379
++I D GT+ CV + L + + +
Sbjct: 66 SIVILALRPSDEGTYECVVLKYEKDAFKREHLAEVTLSVKADFPTPSISDFEIPTSNIRR 125
Query: 380 SVCS 383
+CS
Sbjct: 126 IICS 129
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148,
structural genomics, PSI-2, protein structure
initiative; 2.10A {Legionella pneumophila subsp}
Length = 362
Score = 45.1 bits (107), Expect = 5e-05
Identities = 24/168 (14%), Positives = 51/168 (30%), Gaps = 46/168 (27%)
Query: 76 NLQKIYLSRCRISVIDSKAF-RGL----TNLVDLDFSHN------------VLQTVPSDT 118
++ + LS + +S + L N+ L+ S N L +P
Sbjct: 52 SVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPF-- 109
Query: 119 FPDYPSLMKLTLSGNPI-----KQIKTGAFQPLSYLVTLELSKCGIEVIEDAAFVGL--- 170
++ L L N + K + + +L L + + L
Sbjct: 110 -----TITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGND---LGIKSSDELIQI 161
Query: 171 -----DSLEWLKLDNNKITTISGSNI------LPTGLHGIDLHHNPWT 207
++ L L N + + + + + +P + +DL N
Sbjct: 162 LAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLG 209
Score = 40.5 bits (95), Expect = 0.001
Identities = 22/162 (13%), Positives = 48/162 (29%), Gaps = 39/162 (24%)
Query: 76 NLQKIYLSRCRISVIDSKAF-RGL----TNLVDLDFSHN------------VLQTVPSDT 118
+ + L S S F + ++ L+ N +L +P+
Sbjct: 110 TITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPA-- 167
Query: 119 FPDYPSLMKLTLSGNPI-----KQIKTGAFQPLSYLVTLELSKC-----GIEVIEDAAFV 168
++ L L GN + ++ + + +L+LS +
Sbjct: 168 -----NVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSS 222
Query: 169 GLDSLEWLKLDNNKITTISGSNI-----LPTGLHGIDLHHNP 205
+ + L L N + S N+ L + L ++
Sbjct: 223 IPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDI 264
Score = 38.1 bits (89), Expect = 0.009
Identities = 17/161 (10%), Positives = 41/161 (25%), Gaps = 35/161 (21%)
Query: 76 NLQKIYLSRCRISVIDSKAF-RGL----TNLVDLDFSHNVLQTVP----SDTFPDYPSLM 126
++ + LS + + ++V L+ N L L
Sbjct: 197 SVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQ 256
Query: 127 KLTLSGNPIKQIKTGAFQPL-------SYLVTLELSKCGI---------EVIEDAAFVGL 170
+ L + +K + + L ++ ++ + I +I + +
Sbjct: 257 TVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPSHSIPISNLIRELSG--- 313
Query: 171 DSLEWLKLDNNKITTISGSNI------LPTGLHGIDLHHNP 205
+ L N + +P L P
Sbjct: 314 -KADVPSLLNQCLIFAQKHQTNIEDLNIPDELRESIQTCKP 353
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral
twinning, leucine-rich repeat protein, LRR, merohedral
twinning; 2.2A {Schizosaccharomyces pombe} SCOP:
c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Length = 386
Score = 45.1 bits (107), Expect = 6e-05
Identities = 27/169 (15%), Positives = 45/169 (26%), Gaps = 36/169 (21%)
Query: 72 MGLVNLQKIYLSRCRISVIDSKAF----RGLTNLVDLDFSHNVLQ----TVPSDTFPDYP 123
M +++ L I+ D K+ ++ ++ S N + S+
Sbjct: 1 MARFSIEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKK 60
Query: 124 SLMKLTLSGNPIKQIKT----------GAFQPLSYLVTLELSKCGIEVIEDAAFVGL--- 170
L S ++K A L T+ LS +
Sbjct: 61 DLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSK 120
Query: 171 -DSLEWLKLDNNKITTISGSNI--------------LPTGLHGIDLHHN 204
LE L L NN + +G+ I L I N
Sbjct: 121 HTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRN 169
Score = 42.0 bits (99), Expect = 5e-04
Identities = 24/169 (14%), Positives = 43/169 (25%), Gaps = 43/169 (25%)
Query: 76 NLQKIYLSRCRISVIDSKAFRGL----------TNLVDLDFSHNVL--QTVP--SDTFPD 121
+L+ S + + L L + S N D
Sbjct: 61 DLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSK 120
Query: 122 YPSLMKLTLSGNPI-------------KQIKTGAFQPLSYLVTLELSKCGIEVIEDA--- 165
+ L L L N + + + L ++ + +E +
Sbjct: 121 HTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLE---NGSMK 177
Query: 166 ----AFVGLDSLEWLKLDNNKITTISGSNILPTGLHG------IDLHHN 204
F L +K+ N I ++L GL +DL N
Sbjct: 178 EWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDN 226
Score = 38.5 bits (90), Expect = 0.007
Identities = 17/119 (14%), Positives = 39/119 (32%), Gaps = 29/119 (24%)
Query: 76 NLQKIYLSRCRISVID----SKAFRGLTNLVDLDFSHNVLQT------VPSDTFPDYPSL 125
L+ + L + + + A + NL +L + +L V + + + L
Sbjct: 217 ELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGL 276
Query: 126 MKLTLSGNPIKQIKTGAFQPLSYLVTLELSKCGIEVIEDAAFVGLDSLEWLKLDNNKIT 184
L L N I+ + ++ + L +L+L+ N+ +
Sbjct: 277 QTLRLQYNEIELD-------------------AVRTLKTVIDEKMPDLLFLELNGNRFS 316
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed
beta-alpha superhelix, leucine-rich repeat structural
genomics; HET: MSE PG4; 1.99A {Bacteroides
thetaiotaomicron}
Length = 329
Score = 44.4 bits (105), Expect = 8e-05
Identities = 38/136 (27%), Positives = 58/136 (42%), Gaps = 10/136 (7%)
Query: 59 NNLKTLHNEKFQKMGLVNLQKIYLSRCRISVIDSKAFRGL----TNLVDLDFSHNVLQTV 114
+ L +E + + + I +D+ F+ + NLV LD S T+
Sbjct: 185 GAMGKLEDEIMK--AGLQPRDINFL-TIEGKLDNADFKLIRDYMPNLVSLDISKTNATTI 241
Query: 115 PSDTFPDYPSLMKLTLSGNPIKQIKTGAFQPLSYLV-TLELSKCGIEVIEDAAFVGLDSL 173
P TF L+K+ L N +K I F L TLEL + IE AF+G D+L
Sbjct: 242 PDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNL 299
Query: 174 EWLKLDNNKITTISGS 189
++ +KITT+
Sbjct: 300 RYVLATGDKITTLGDE 315
Score = 41.7 bits (98), Expect = 7e-04
Identities = 18/104 (17%), Positives = 33/104 (31%), Gaps = 7/104 (6%)
Query: 87 ISVIDSKAFRGLTNLVDLDFSHNVLQTVPSDTFPDYPSLMKLTLSGNPIKQIKTGAFQPL 146
+ + AF L + + + + K + F+ +
Sbjct: 164 KNRWEHFAFIEGEPLETTIQVGAM-GKLEDEIMKAGLQPRDINFLTIEGK-LDNADFKLI 221
Query: 147 SY----LVTLELSKCGIEVIEDAAFVGLDSLEWLKLDNNKITTI 186
LV+L++SK I D F L +KL + + TI
Sbjct: 222 RDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKL-PHNLKTI 264
Score = 39.0 bits (91), Expect = 0.004
Identities = 24/119 (20%), Positives = 44/119 (36%), Gaps = 5/119 (4%)
Query: 59 NNLKTLHNEKFQ--KMGLVNLQKIYLSRCRISVIDSKAFRGLTNLVDLDFSHNVLQTVPS 116
L N F+ + + NL + +S+ + I F L+ + HN+ +T+
Sbjct: 208 TIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHNL-KTIGQ 266
Query: 117 DTFPDYPSLMK-LTLSGNPIKQIKTGAFQPLSYLVTLELSKCGIEVIEDAAFVGLDSLE 174
F + L L L + + I+ GAF L + + I + D F +
Sbjct: 267 RVFSNCGRLAGTLELPAS-VTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSK 324
Score = 37.1 bits (86), Expect = 0.020
Identities = 20/121 (16%), Positives = 36/121 (29%), Gaps = 8/121 (6%)
Query: 58 GNNLKTLHNEKFQKMGLVNLQKIYLSRCRISVIDSKAFRGLTNLVDLDFSHNVLQTVPSD 117
+ N + G L+K+ LS I I+ AF+G NL + +
Sbjct: 86 AYAFSNVVNGVTK--GKQTLEKVILSEK-IKNIEDAAFKGCDNLKICQIRKKTAPNLLPE 142
Query: 118 TFPDYPSLM----KLTLSGNPIKQIKTGAFQPLSYLVTLELSKCGIEVIEDAAFVGLDSL 173
D + + + + + + AF L T + +ED
Sbjct: 143 ALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPLETTIQVG-AMGKLEDEIMKAGLQP 201
Query: 174 E 174
Sbjct: 202 R 202
>2zg1_A Sialic acid-binding IG-like lectin 5; siglec-5 inhibitory receptor,
two-domain structure, V-SET, C2-SET, IG-like domain,
6'-sialyllactose complex; HET: SIA; 2.70A {Homo sapiens}
PDB: 2zg3_A* 2zg2_A
Length = 214
Score = 43.3 bits (101), Expect = 1e-04
Identities = 17/113 (15%), Positives = 33/113 (29%), Gaps = 23/113 (20%)
Query: 245 QLSIDELACEPQITPSTFYLEIQEGKNVSLLCKVSAI----PEAKITWLFDGVPIQNESM 300
L + L +P I + G+ L C + P +W + + +
Sbjct: 117 NLEVTALIEKPDIHFLEPL---ESGRPTRLSCSLPGSCEAGPPLTFSWTGNALSPLDPET 173
Query: 301 SASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCVAENQAGSTSSNYTIR 353
+ S SEL + D C + Q ++ T++
Sbjct: 174 TRS----------------SELTLTPRPEDHGTNLTCQMKRQGAQVTTERTVQ 210
Score = 30.2 bits (67), Expect = 1.7
Identities = 26/135 (19%), Positives = 44/135 (32%), Gaps = 17/135 (12%)
Query: 267 QEGKNVSLLCKVSA-------IPEAKITWLFDGVPIQNESMSASESHAVYSTEEG----- 314
QEG V + C S P + W DG + A+ + E
Sbjct: 13 QEGLCVLVPCSFSYPWRSWYSSPPLYVYWFRDGEIPYYAEVVATNNPDRRVKPETQGRFR 72
Query: 315 ----TEIKKSELLIYNSNIDDNGTFVCVAENQAGSTSSNYTIRIVLK-EENVEVVTVFPL 369
+ K L I ++ ++D G++ E S ++ L+ +E + L
Sbjct: 73 LLGDVQKKNCSLSIGDARMEDTGSYFFRVERGRDVKYSYQQNKLNLEVTALIEKPDIHFL 132
Query: 370 EYVLIVSGIISVCSL 384
E + CSL
Sbjct: 133 EPLESGRPTRLSCSL 147
>3nvq_A Semaphorin-7A; beta-propeller, signaling, signaling protein-protein
binding; HET: NAG NDG; 2.40A {Homo sapiens}
Length = 590
Score = 44.6 bits (104), Expect = 1e-04
Identities = 29/253 (11%), Positives = 59/253 (23%), Gaps = 29/253 (11%)
Query: 103 DLDFSHNVLQTVPSDTFPDYPSLMKLTLSGNPIKQIKTGAFQPLSYLVTLELSK-CGIEV 161
+ + + + + L T G K ++ G + +E+
Sbjct: 361 KYHYQKVAVHRMQASHGETFHVLYLTTDRGTIHKVVEPGEQEHSFAFNIMEIQPFRRAAA 420
Query: 162 IEDAAFVGLDSLEWLKLDNNKITTISGSNILPTGLHGIDLHHNPWTCDCLLIGLRRWLES 221
I+ L + K+ S + L +++ CL+ R
Sbjct: 421 IQT---------MSLDAERRKLYVSSQWEVSQVPLDLCEVYGGG-CHGCLMS---RDPYC 467
Query: 222 TKTPMAIDPICSVPPRLSSVTIKQLSIDELACEPQITPSTFYLEIQEGKNVSLLCKVSAI 281
I S + E + + L C +
Sbjct: 468 GWDQGRCISIYSSERSVLQSINPAEPHKECPNPKPDKAPLQKVSLAPNSRYYLSCPME-S 526
Query: 282 PEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCVA-E 340
A +W Q + + L I N G + C A E
Sbjct: 527 RHATYSWRHKENVEQ-------SCEPGHQSPNCI------LFIENLTAQQYGHYFCEAQE 573
Query: 341 NQAGSTSSNYTIR 353
+ ++ +
Sbjct: 574 GSYFREAQHWQLL 586
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0,
hydrogen ION transport, inner membrane, ION transport,
membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A
3dze_A 3e2j_A
Length = 176
Score = 42.5 bits (100), Expect = 1e-04
Identities = 24/134 (17%), Positives = 42/134 (31%), Gaps = 25/134 (18%)
Query: 59 NNLKTLHNEKFQKMGLVNLQKIYLSRCRISVIDSKAFRGLTNLVDLDFSHNV------LQ 112
N+L T +K+ +Q I + I I GL + + L+
Sbjct: 51 NHLPTGPLDKY------KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLE 104
Query: 113 TVPSDTFPDYPSLMKLTLSGNP------IKQIKTGAFQPLSYLVTLELSKC-GIEVIEDA 165
+ S S++++ + I + L L LS G++ E
Sbjct: 105 RL-SQLENLQKSMLEMEIISCGNVTDKGIIALH-----HFRNLKYLFLSDLPGVKEKEKI 158
Query: 166 AFVGLDSLEWLKLD 179
SL L+L
Sbjct: 159 VQAFKTSLPSLELK 172
Score = 35.2 bits (81), Expect = 0.038
Identities = 11/81 (13%), Positives = 25/81 (30%), Gaps = 6/81 (7%)
Query: 143 FQPLSYLVTLELSKCGIEVIEDAAFVGLDSLEWLKLDNNK------ITTISGSNILPTGL 196
+ ++ + I I GL +E ++L + +S L +
Sbjct: 57 PLDKYKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSM 116
Query: 197 HGIDLHHNPWTCDCLLIGLRR 217
+++ D +I L
Sbjct: 117 LEMEIISCGNVTDKGIIALHH 137
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG;
1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Length = 313
Score = 43.3 bits (103), Expect = 2e-04
Identities = 34/170 (20%), Positives = 63/170 (37%), Gaps = 30/170 (17%)
Query: 49 PNTQVLDYTGNNL-----KTLHNEKFQKMGLVNLQKIYLSRCRIS-VIDSKAFRGLTNLV 102
L T N+ L + L + S +S + + L NLV
Sbjct: 101 TQLHYLYITHTNVSGAIPDFLSQ-------IKTLVTLDFSYNALSGTLPP-SISSLPNLV 152
Query: 103 DLDFSHNVLQ-TVPSDTFPDYPSLMK-LTLSGNPIKQIKTGAFQPLSY----LVTLELSK 156
+ F N + +P ++ + L +T+S N + TG P ++ L ++LS+
Sbjct: 153 GITFDGNRISGAIPD-SYGSFSKLFTSMTISRNRL----TGKI-PPTFANLNLAFVDLSR 206
Query: 157 CGIE-VIEDAAFVGLDSLEWLKLDNNKIT-TISGSNILPTGLHGIDLHHN 204
+E F + + + L N + + L L+G+DL +N
Sbjct: 207 NMLEGDAS-VLFGSDKNTQKIHLAKNSLAFDLG-KVGLSKNLNGLDLRNN 254
Score = 36.4 bits (85), Expect = 0.030
Identities = 16/62 (25%), Positives = 26/62 (41%), Gaps = 5/62 (8%)
Query: 74 LVNLQKIYLSRCRIS-VIDSKAFRGLTNLVDLDFSHNVLQ-TVPSDTFPDYPSLMKLTLS 131
N QKI+L++ ++ + NL LD +N + T+P L L +S
Sbjct: 220 DKNTQKIHLAKNSLAFDLGK--VGLSKNLNGLDLRNNRIYGTLPQ-GLTQLKFLHSLNVS 276
Query: 132 GN 133
N
Sbjct: 277 FN 278
Score = 34.4 bits (80), Expect = 0.10
Identities = 37/172 (21%), Positives = 60/172 (34%), Gaps = 40/172 (23%)
Query: 52 QVLDYTGNNL-----KTLHNEKFQKMGLVNLQKIYLSRCRIS-VIDSKAFRGLTNLV-DL 104
LD++ N L ++ + L NL I RIS I ++ + L +
Sbjct: 128 VTLDFSYNALSGTLPPSISS-------LPNLVGITFDGNRISGAI-PDSYGSFSKLFTSM 179
Query: 105 DFSHNVLQ-TVPSDTFPDYPSLMKLTLSGNPIKQIKTG----AFQPLSYLVTLELSKCGI 159
S N L +P +L + LS N + G F + L+K +
Sbjct: 180 TISRNRLTGKIPPTFA--NLNLAFVDLSRNML----EGDASVLFGSDKNTQKIHLAKNSL 233
Query: 160 E-VIEDAAFVGLDSLEWLKLDNNKITTISGSNILP------TGLHGIDLHHN 204
+ +L L L NN+ I G+ LP LH +++ N
Sbjct: 234 AFDLGK--VGLSKNLNGLDLRNNR---IYGT--LPQGLTQLKFLHSLNVSFN 278
Score = 33.7 bits (78), Expect = 0.20
Identities = 38/204 (18%), Positives = 59/204 (28%), Gaps = 74/204 (36%)
Query: 22 CICKWKGGKQTVECVNKSLITVVEGMDPNTQVLDYTGNNL-------KTLHNEKFQKMGL 74
C W G V C + V LD +G NL +L N L
Sbjct: 34 CNRTWLG----VLCDTDTQTYRV-------NNLDLSGLNLPKPYPIPSSLAN-------L 75
Query: 75 VNLQKIYLSRCRISVIDSKAFRG--------LTNLVDLDFSHNVLQ-TVPSDTFPDYPSL 125
L +Y+ G LT L L +H + +P +L
Sbjct: 76 PYLNFLYIG-------GINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPD-FLSQIKTL 127
Query: 126 MKLTLSGNPIKQIKTGAFQPLSYLVTLELSKCGIEVIEDAAFVGLDSLEWLKLDNNKIT- 184
+ L S N + +G P S +S +L + D N+I+
Sbjct: 128 VTLDFSYNAL----SGTL-PPS------ISSLP-------------NLVGITFDGNRISG 163
Query: 185 ----TISGSNILPTGLHGIDLHHN 204
+ + L T + + N
Sbjct: 164 AIPDSYGSFSKLFTSM---TISRN 184
Score = 31.7 bits (73), Expect = 0.74
Identities = 13/63 (20%), Positives = 20/63 (31%), Gaps = 5/63 (7%)
Query: 74 LVNLQKIYLSRCRIS-VIDSKAFRGLTNLVDLDFSHNVLQ-TVPSDTFPDYPSLMKLTLS 131
NL + L RI + + L L L+ S N L +P + +
Sbjct: 243 SKNLNGLDLRNNRIYGTL-PQGLTQLKFLHSLNVSFNNLCGEIPQG--GNLQRFDVSAYA 299
Query: 132 GNP 134
N
Sbjct: 300 NNK 302
>3rbg_A Cytotoxic and regulatory T-cell molecule; IGV, crtam, structural
genomics, PSI-biology, NEW YORK struc genomics research
consortium, nysgrc; 2.30A {Homo sapiens}
Length = 124
Score = 40.7 bits (95), Expect = 2e-04
Identities = 18/96 (18%), Positives = 36/96 (37%), Gaps = 5/96 (5%)
Query: 255 PQITPSTFYLEIQEGKNVSLLCKVSAIPEAKITWLFDG--VPIQNESMSASESHAVYSTE 312
+T T + ++EG+ ++L C S + + WL NE S
Sbjct: 2 GSLTNHTETITVEEGQTLTLKCVTSLRKNSSLQWLTPSGFTIFLNEYPVLKNSKYQLLHH 61
Query: 313 EGTEIKKSELLIYNSNIDDNGTFVCVAENQAGSTSS 348
++ + + N + D G + C+ + + ST
Sbjct: 62 SANQLS---ITVPNVTLQDEGVYKCLHYSDSVSTKE 94
>1gsm_A Madcam-1, mucosal addressin cell adhesion molecule-1; cell adhesion
protein, immunoglobulin fold, I-SET fold, cell adhesion
glycoprotein; 1.9A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4
PDB: 1bqs_A*
Length = 210
Score = 42.2 bits (98), Expect = 2e-04
Identities = 17/116 (14%), Positives = 38/116 (32%), Gaps = 16/116 (13%)
Query: 256 QITPSTFYLEIQEGKNVSLLCKVS-AIPEAKITWLFDGVPIQNESMSASESHAVYSTEEG 314
Q+ P + + G + L C+++ A A + W +
Sbjct: 9 QVEPPEPVVAVALGASRQLTCRLACADRGASVQWRGLDTSLGAV---------------Q 53
Query: 315 TEIKKSELLIYNSNIDDNGTFVCVAENQAGSTSSNYTIRIVLKEENVEVVTVFPLE 370
++ +S L + N+++ GT VCV + + + + V +
Sbjct: 54 SDTGRSVLTVRNASLSAAGTRVCVGSCGGRTFQHTVQLLVYAFPNQLTVSPAALVP 109
>2ocw_A Polymeric-immunoglobulin receptor; SC, secretory, antibody,
immunity, immune system; NMR {Homo sapiens} PDB: 3chn_S
3cm9_S 3chn_J 3cm9_J
Length = 585
Score = 43.4 bits (101), Expect = 3e-04
Identities = 18/119 (15%), Positives = 44/119 (36%), Gaps = 7/119 (5%)
Query: 255 PQITPSTFYLEIQEGKNVSLLCKVSAIPEAKITWLFDG-------VPIQNESMSASESHA 307
P + T + G+ V++ C K L+ V + ++ + +
Sbjct: 113 PGLLNDTKVYTVDLGRTVTINCPFKTENAQKRKSLYKQIGLYPVLVIDSSGYVNPNYTGR 172
Query: 308 VYSTEEGTEIKKSELLIYNSNIDDNGTFVCVAENQAGSTSSNYTIRIVLKEENVEVVTV 366
+ +GT ++I + D G ++C A + + S N ++++ E + +
Sbjct: 173 IRLDIQGTGQLLFSVVINQLRLSDAGQYLCQAGDDSNSNKKNADLQVLKPEPELVYEDL 231
Score = 39.2 bits (90), Expect = 0.005
Identities = 10/83 (12%), Positives = 21/83 (25%), Gaps = 7/83 (8%)
Query: 264 LEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELL 323
L + LC+ S+ + G + ++
Sbjct: 241 LGPEVANVAKFLCRQSSGENCDVVVNTLGKRAP-------AFEGRILLNPQDKDGSFSVV 293
Query: 324 IYNSNIDDNGTFVCVAENQAGST 346
I +D G ++C A +
Sbjct: 294 ITGLRKEDAGRYLCGAHSDGQLQ 316
Score = 38.1 bits (87), Expect = 0.011
Identities = 18/106 (16%), Positives = 34/106 (32%), Gaps = 11/106 (10%)
Query: 255 PQITPSTFYLEIQEGKNVSLLCKV---SAIPEAKITWLFDGVPIQNESMSASESHAVYST 311
P P + EG +VS+ C S + W G ++ +SE +
Sbjct: 3 PIFGPEE--VNSVEGNSVSITCYYPPTSVNRHTRKYWCRQGARGGCITLISSEGYVSSKY 60
Query: 312 EEGTEIKKS------ELLIYNSNIDDNGTFVCVAENQAGSTSSNYT 351
+ + I + DD+G + C + S + +
Sbjct: 61 AGRANLTNFPENGTFVVNIAQLSQDDSGRYKCGLGINSRGLSFDVS 106
Score = 37.3 bits (85), Expect = 0.021
Identities = 11/96 (11%), Positives = 30/96 (31%), Gaps = 9/96 (9%)
Query: 264 LEIQEGKNVSLLCKVSAIPEAKITWLFDG---------VPIQNESMSASESHAVYSTEEG 314
++ G +V++LC + I + + + +E ++ S E
Sbjct: 341 VKGVAGSSVAVLCPYNRKESKSIKYWCLWEGAQNGRCPLLVDSEGWVKAQYEGRLSLLEE 400
Query: 315 TEIKKSELLIYNSNIDDNGTFVCVAENQAGSTSSNY 350
+++ D G + C+ ++
Sbjct: 401 PGNGTFTVILNQLTSRDAGFYWCLTNGDTLWRTTVE 436
Score = 32.7 bits (73), Expect = 0.51
Identities = 10/86 (11%), Positives = 19/86 (22%), Gaps = 7/86 (8%)
Query: 267 QEGKNVSLLCKVSA----IPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSEL 322
G+ + + C + W G V E + L
Sbjct: 455 VLGETLKVPCHFPCKFSSYEKYWCKWNNTGCQALPSQDEGPSKAFVNCDENSRLVS---L 511
Query: 323 LIYNSNIDDNGTFVCVAENQAGSTSS 348
+ D G + C + +
Sbjct: 512 TLNLVTRADEGWYWCGVKQGHFYGET 537
>2v5y_A Receptor-type tyrosine-protein phosphatase MU; membrane, hydrolase,
glycoprotein, receptor protei tyrosine phosphatase, cell
adhesion; HET: NAG; 3.10A {Homo sapiens}
Length = 731
Score = 43.2 bits (101), Expect = 3e-04
Identities = 14/103 (13%), Positives = 32/103 (31%), Gaps = 7/103 (6%)
Query: 253 CEPQITPSTFYLEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTE 312
+E+ G+ + C A G+ +++ + + +
Sbjct: 163 TRTPHFLRIQNVEVNAGQFATFQCSAIGRTVAGDRLWLQGIDVRDAPLKEIKVTSSRRFI 222
Query: 313 EGTEIKKSELLIYNSNIDDNGTFVCVAENQAGSTSSNYTIRIV 355
+ + N+ D G + C+ + G SNY +V
Sbjct: 223 -------ASFNVVNTTKRDAGKYRCMIRTEGGVGISNYAELVV 258
>1olz_A Semaphorin 4D; developmental protein, CD100, beta-propeller, PSI
domain, IG-like domain, extracellular receptor,
neurogenesis; 2.0A {Homo sapiens} SCOP: b.1.1.4
b.69.12.1 g.16.2.1 PDB: 3ol2_A*
Length = 663
Score = 43.2 bits (100), Expect = 3e-04
Identities = 37/191 (19%), Positives = 61/191 (31%), Gaps = 18/191 (9%)
Query: 179 DNNKITTISGSNILPTGLHGIDLHHNPWTCDCLLIGLRRWLESTKTPMAIDPICSVPPRL 238
N + S S ++ L H C R + P A
Sbjct: 462 GNRFVYAGSNSGVVQAPLAFCGKHGTCEDCV----LARDPYCAWSPPTATCVALHQTESP 517
Query: 239 SSVTIKQLSIDELACEPQITPSTFYLEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNE 298
S I+++S D C + S + G L C + A++ W F ++ E
Sbjct: 518 SRGLIQEMSGDASVCPDKSKGSYRQHFFKHGGTAELKCSQKS-NLARVFWKFQNGVLKAE 576
Query: 299 SMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCVA-ENQAGSTSSNYTIRIVLK 357
S + LLI+N + D+G + C++ E T + VL+
Sbjct: 577 S-----PKYGLMGRKN-------LLIFNLSEGDSGVYQCLSEERVKNKTVFQVVAKHVLE 624
Query: 358 EENVEVVTVFP 368
+ V V P
Sbjct: 625 VKVVPKPVVAP 635
>2if7_A SLAM family member 6; NTB-A, homophilic receptor, immune system;
3.00A {Homo sapiens}
Length = 193
Score = 41.5 bits (97), Expect = 4e-04
Identities = 14/101 (13%), Positives = 31/101 (30%), Gaps = 22/101 (21%)
Query: 254 EPQITPSTFYLEIQEGKNVSLLCKV-SAIPEAKITWLFDGVPIQNESMSASESHAVYSTE 312
Q+T + + + L C V A W G + ++
Sbjct: 110 NIQVTNHSQLFQ-NMTCELHLTCSVEDADDNVSFRWEALGNTLSSQP------------- 155
Query: 313 EGTEIKKSELLIYNSNIDDNGTFVCVAENQAGSTSSNYTIR 353
+ + ++ I + C+AEN + S + + +
Sbjct: 156 -------NLTVSWDPRISSEQDYTCIAENAVSNLSFSVSAQ 189
Score = 40.4 bits (94), Expect = 9e-04
Identities = 25/124 (20%), Positives = 54/124 (43%), Gaps = 7/124 (5%)
Query: 268 EGKNVSLLCKVSAIPEAK-ITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKS-----E 321
G++V+L + A + ITWLF+ + ++S ++ T + +
Sbjct: 12 LGESVTLPLEFPAGEKVNFITWLFNETSLAFIVPHETKSPEIHVTNPKQGKRLNFTQSYS 71
Query: 322 LLIYNSNIDDNGTFVCVAENQAGSTSSNYTIRIVLKEENVEVVTVFPLEYVLIVSGIISV 381
L + N ++D G++ + + S+YT+RI+ + N+ VT + + +
Sbjct: 72 LQLSNLKMEDTGSYRAQISTKTSAKLSSYTLRILRQLRNI-QVTNHSQLFQNMTCELHLT 130
Query: 382 CSLV 385
CS+
Sbjct: 131 CSVE 134
>1xiw_A T-cell surface glycoprotein CD3 epsilon chain; CD3-epsilon,
CD3-delta, UCHT1-SCFV, immunoglobulin fold,
antibody-antigen complex; 1.90A {Homo sapiens} SCOP:
b.1.1.4
Length = 105
Score = 39.4 bits (91), Expect = 5e-04
Identities = 17/98 (17%), Positives = 33/98 (33%), Gaps = 15/98 (15%)
Query: 255 PQITPSTFYLEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEG 314
IT + + + I G V L C P ++I W + I + +
Sbjct: 8 GGITQTPYKVSIS-GTTVILTCPQY--PGSEILWQHNDKNIGGDEDDKNIGS-------- 56
Query: 315 TEIKKSELLIYN-SNIDDNGTFVCVAENQAGSTSSNYT 351
+ L + S ++ +G +VC ++ Y
Sbjct: 57 ---DEDHLSLKEFSELEQSGYYVCYPRGSKPEDANFYL 91
>2wng_A Tyrosine-protein phosphatase non-receptor type substrate 1; signal
regulatory protein alpha, immunoglobulin superfamily,
phosphoprotein; HET: NAG; 2.49A {Homo sapiens}
Length = 327
Score = 41.8 bits (98), Expect = 6e-04
Identities = 22/128 (17%), Positives = 46/128 (35%), Gaps = 9/128 (7%)
Query: 231 ICSVPPRLSSVTIKQLSIDELACEPQITPSTFYL-EIQEGKNVSLLCKVSAI--PEAKIT 287
IC V + + + ++ V++ C+V ++T
Sbjct: 196 ICEVAHVTLQGDPLRGTANLSETIRVPPTLEVTQQPVRAENQVNVTCQVRKFYPQRLQLT 255
Query: 288 WLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCVAENQA-GST 346
WL +G + E+ S ++GT S LL+ S D+ C E+ +
Sbjct: 256 WLENGNVSRTETASTVT-----ENKDGTYNWMSWLLVNVSAHRDDVKLTCQVEHDGQPAV 310
Query: 347 SSNYTIRI 354
S ++ +++
Sbjct: 311 SKSHDLKV 318
>2w59_A IGY FCU3-4; immunoglobulin, avian, immune system; HET: NAG MAN;
1.75A {Gallus gallus}
Length = 231
Score = 40.8 bits (95), Expect = 0.001
Identities = 19/144 (13%), Positives = 38/144 (26%), Gaps = 23/144 (15%)
Query: 228 IDPICSVPPRLSSVTIKQLSIDELACEPQITPSTFYLEIQEGKNVSLLCKVSAIP---EA 284
I P + + I PS E+ + L C V +P
Sbjct: 2 ISPDGAQSCSPIQLYA-------------IPPSP--GELYISLDAKLRCLVVNLPSDSSL 46
Query: 285 KITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCVAENQAG 344
+TW + + H GT S + + + F C +++
Sbjct: 47 SVTWTREKSGNLRPDPMVLQEH-----FNGTYSASSAVPVSTQDWLSGERFTCTVQHEEL 101
Query: 345 STSSNYTIRIVLKEENVEVVTVFP 368
+ ++ ++ F
Sbjct: 102 PLPLSKSVYRNTGPTTPPLIYPFA 125
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein,
BIG3 domain, LRR domain, STRU genomics; 2.05A
{Bacteroides ovatus} PDB: 4fd0_A
Length = 401
Score = 40.9 bits (96), Expect = 0.001
Identities = 16/108 (14%), Positives = 37/108 (34%), Gaps = 8/108 (7%)
Query: 87 ISVIDSKAFRGLTNLVDLDFSHNVLQTVPSDTFPDY-----PSLMKLTLSGNPIKQIKTG 141
++ I S+AF L ++ + P Y P L + + + I+ + G
Sbjct: 259 VTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPES-IRILGQG 317
Query: 142 AFQPLSYLVTLELSKCGIEVIEDAAFVGLDSLEWLKLDNNKITTISGS 189
+ L + + I +AF ++ +K++ +
Sbjct: 318 LLGGNRKVTQLTIPA-NVTQINFSAFNNT-GIKEVKVEGTTPPQVFEK 363
Score = 38.2 bits (89), Expect = 0.009
Identities = 18/105 (17%), Positives = 34/105 (32%), Gaps = 9/105 (8%)
Query: 87 ISVIDSKAFRGLTNLVDLDFSHNVLQTVPSDTFPDYPSLMKLTLSGNPIKQIKTGAFQPL 146
+ I S+AF + L ++ NV T+ + F + + L + I + AF
Sbjct: 214 LKEIGSQAFLKTSQLKTIEIPENV-STIGQEAF-RESGITTVKLPNG-VTNIASRAFYYC 270
Query: 147 SYLVTLELSK-----CGIEVIEDAAFVGLDSLEWLKLDNNKITTI 186
L + +I G L ++ I +
Sbjct: 271 PELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEI-PESIRIL 314
Score = 33.9 bits (78), Expect = 0.17
Identities = 18/110 (16%), Positives = 39/110 (35%), Gaps = 19/110 (17%)
Query: 87 ISVIDSKAFRGLTNLVDLDFSHNVLQTVPSDTFPDYPSLMKLTLSGNPIKQIKTGAFQPL 146
+ I AFR + + + + + +++ F ++ ++ ++Q+K F
Sbjct: 124 VKSIPKDAFRN-SQIAKVVLNEGL-KSIGDMAF-FNSTVQEIVFPST-LEQLKEDIFYYC 179
Query: 147 SYLVTLELSKCGIEVIEDAAFVGLDSLEWLKLDNNKITTISGSNILPTGL 196
L +LSK I + + F I + +LP L
Sbjct: 180 YNLKKADLSKTKITKLPASTF-----------VYAGIEEV----LLPVTL 214
Score = 32.8 bits (75), Expect = 0.38
Identities = 18/133 (13%), Positives = 41/133 (30%), Gaps = 16/133 (12%)
Query: 75 VNLQKIYLSRCRISVIDSKAFRGLTNLVDLDFSHNVLQTVPSDTFPDYPSLMKLTLSGNP 134
V + ++I G L + ++ + + + +LT+ N
Sbjct: 276 VTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPESI-RILGQGLLGGNRKVTQLTIPAN- 333
Query: 135 IKQIKTGAFQPLSYLVTLELSKCGIEVIEDAAFVGLDSLEWLKLDNNKITTISGSNILPT 194
+ QI AF + + +++ + + + G + IT I +P
Sbjct: 334 VTQINFSAFN-NTGIKEVKVEGTTPPQVFEKVWYG---------FPDDITVI----RVPA 379
Query: 195 GLHGIDLHHNPWT 207
+ N W
Sbjct: 380 ESVEKYKNANGWR 392
>4f80_A Butyrophilin subfamily 3 member A1; B7 superfamily, CD277, immune
system; 1.94A {Homo sapiens} PDB: 4f9l_A* 4f9p_A 4f8t_A
4f8q_A
Length = 226
Score = 39.7 bits (92), Expect = 0.002
Identities = 12/106 (11%), Positives = 30/106 (28%), Gaps = 9/106 (8%)
Query: 250 ELACEPQITPSTFYLEIQEGKNVSLLCKVS-AIPEAKITWLFDGVPIQNESMSASESHAV 308
EL + ++ + + L C+ + P+ +I W + + V
Sbjct: 114 ELKVAALGSDLHVDVKGYKDGGIHLECRSTGWYPQPQIQWSNN-----KGENIPTVEAPV 168
Query: 309 YSTEEGTEIKKSELLIYNSNIDDNGTFVCVAENQAGSTSSNYTIRI 354
+ G + +++ C + +I I
Sbjct: 169 VADGVGLYAVAASVIM---RGSSGEGVSCTIRSSLLGLEKTASISI 211
Score = 33.1 bits (75), Expect = 0.21
Identities = 19/141 (13%), Positives = 45/141 (31%), Gaps = 18/141 (12%)
Query: 256 QITPSTFYLEIQEGKNVSLLCKVSAIPEAK---ITWLFDGVP----------IQNESMSA 302
+ + + G++ L C + A+ + W+ + + SA
Sbjct: 6 SVLGPSGPILAMVGEDADLPCHLFPTMSAETMELKWVSSSLRQVVNVYADGKEVEDRQSA 65
Query: 303 SESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCVAENQAGSTSSNYTIRIVLKEENVE 362
+G K+ L I+N D+G ++C ++ + +++ ++
Sbjct: 66 PYRGRTSILRDGITAGKAALRIHNVTASDSGKYLCYFQDGDFYEKALVELKVAALGSDLH 125
Query: 363 VVTVFPLEYVLIVSGIISVCS 383
V + GI C
Sbjct: 126 VDVKGYKD-----GGIHLECR 141
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin
ligase, SCF, protein binding; HET: OGK; 2.80A
{Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Length = 592
Score = 40.7 bits (95), Expect = 0.002
Identities = 19/153 (12%), Positives = 50/153 (32%), Gaps = 12/153 (7%)
Query: 76 NLQKIYLSRCRISVIDSKAF----RGLTNLVDLDFSHNVLQTVPSDT----FPDYPSLMK 127
++ + + S D K + T+L L+F + + SL+
Sbjct: 165 KIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVS 224
Query: 128 LTLSGNPIKQIKTGAFQPLSYLVTLELSKCGIEVIEDAAFVGLDSLEWL-KLDNNKITTI 186
+ + I ++ G F+ + L ++ ++ L L +L + +
Sbjct: 225 VKVGDFEILELV-GFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPN 283
Query: 187 SGSNILP--TGLHGIDLHHNPWTCDCLLIGLRR 217
+ P + +DL + + +++
Sbjct: 284 EMPILFPFAAQIRKLDLLYALLETEDHCTLIQK 316
Score = 36.8 bits (85), Expect = 0.027
Identities = 27/192 (14%), Positives = 55/192 (28%), Gaps = 28/192 (14%)
Query: 73 GLVNLQKIYLSRCRISVIDSK--AFRGLTNLVDLD------FSHNVLQTVPSDTFPDYPS 124
L L+ ++ R +S +D A +L L F+ + L ++ +
Sbjct: 110 NLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHC----RK 165
Query: 125 LMKLTLSGNPIKQIKTGAFQPLS----YLVTLELSKCGIEVIEDAAFV----GLDSLEWL 176
+ L + + + L+ L L I SL +
Sbjct: 166 IKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSV 225
Query: 177 KLDNNKITTISGSNILPTGLH---GIDLHHNPWTCD-----CLLIGLRRWLESTKTPMAI 228
K+ + +I + G L G L+ + + L R S P +
Sbjct: 226 KVGDFEILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEM 285
Query: 229 DPICSVPPRLSS 240
+ ++
Sbjct: 286 PILFPFAAQIRK 297
Score = 32.2 bits (73), Expect = 0.63
Identities = 19/166 (11%), Positives = 46/166 (27%), Gaps = 25/166 (15%)
Query: 73 GLVNLQKIYLSRCRISVIDSKAF-RGLTNLVDLDFSHNVLQTVPSDTFPDY--------- 122
G L+ + + I+ ++ L NL D + +D D
Sbjct: 376 GCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGC 435
Query: 123 PSLMKLTLSGNPIKQIKTGAFQPLS----YLVTLELSKCGIEVIEDAAFV----GLDSLE 174
L + + + + + L G D + G +L+
Sbjct: 436 KKLRRFAFYLRQ-GGLTDLGLSYIGQYSPNVRWMLLGYVG---ESDEGLMEFSRGCPNLQ 491
Query: 175 WLKLDNNKITTISGSNILP--TGLHGIDLHHNPWT-CDCLLIGLRR 217
L++ + + + + L + + + L+ + R
Sbjct: 492 KLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASMTGQDLMQMAR 537
Score = 30.3 bits (68), Expect = 2.9
Identities = 16/95 (16%), Positives = 26/95 (27%), Gaps = 13/95 (13%)
Query: 72 MGLVNLQKIYLSRCRISVIDSKAF-RGLTNLVDLDFSHNVLQTVPSDT-----FPDYPSL 125
N++ + L S F RG NL L+ S+ PSL
Sbjct: 460 QYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCF----SERAIAAAVTKLPSL 515
Query: 126 MKLTLSGNPIKQIKTGAF---QPLSYLVTLELSKC 157
L + G +P + + +
Sbjct: 516 RYLWVQGYRASMTGQDLMQMARPYWNIELIPSRRV 550
>2rcj_C Light chain; immunoglobulin M, polymeric antibodies, immunology,
X-RAY solution scattering, constrained modelling, immune
system; NMR {Homo sapiens}
Length = 523
Score = 40.6 bits (95), Expect = 0.002
Identities = 27/155 (17%), Positives = 43/155 (27%), Gaps = 16/155 (10%)
Query: 218 WLESTKTPMAIDPICSVPPRLSSVTIKQLSIDELACEPQITPSTFYLEIQEGKNVSLLCK 277
T C+V + S+ + + + P + + + C
Sbjct: 290 LGTQTYI-------CNVNHKPSNTKVDKRVEPLSLPSVFLFPPKPKDTLMISRTPEVTCV 342
Query: 278 V----SAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNG 333
V P+ K W DGV + N E T S L + + N D
Sbjct: 343 VVDVSHEDPQVKFNWYVDGVQVHNAKTKPREQQ-----YNSTYRVVSVLTVLHQNWLDGK 397
Query: 334 TFVCVAENQAGSTSSNYTIRIVLKEENVEVVTVFP 368
+ C N+A TI + V P
Sbjct: 398 EYKCKVSNKALPAPIEKTISKAKGQPREPQVYTLP 432
Score = 29.4 bits (66), Expect = 5.1
Identities = 22/148 (14%), Positives = 50/148 (33%), Gaps = 19/148 (12%)
Query: 232 CSV-PPRLSSVTIKQLSIDELACEPQITPSTFYL----EIQEGKNVSLLCKVSA-IPE-A 284
C+ +S + + +P+ P+ E + +L+C +S P
Sbjct: 87 CASWNSSDNSYVFGTGTKVTVLGQPKANPTVTLFPPSSEELQANKATLVCLISDFYPGAV 146
Query: 285 KITWLFDGVPIQNESM---SASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCVAEN 341
+ W DG P++ + +S+ Y+ S L + + ++ C +
Sbjct: 147 TVAWKADGSPVKAGVETTKPSKQSNNKYAA-------SSYLSLTPEQWKSHRSYSCQVTH 199
Query: 342 QAGSTSSNYTIRIVLKEENVEVVTVFPL 369
+ + + + +VFPL
Sbjct: 200 EGSTVEKTVAPTEC--SASTKGPSVFPL 225
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral
signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A
{Homo sapiens}
Length = 372
Score = 39.7 bits (93), Expect = 0.003
Identities = 30/215 (13%), Positives = 65/215 (30%), Gaps = 49/215 (22%)
Query: 30 KQTVECVNKSLITVVEGMDPNTQVLDYTGNNLKTLHNEKFQKMGLVNLQKIYLSRCRISV 89
+ + + K L + + P +++LD N++F L +L+++ L+ R++
Sbjct: 28 LENAQAIKKKLGKLGRQVLPPSELLD-HLFFHYEFQNQRFSAEVLSSLRQLNLAGVRMTP 86
Query: 90 IDSKAF-RGL----TNLVDLDFSHN------------VLQTVPSDTFPDYPSLMKLTLSG 132
+ L L +++ + V KL L
Sbjct: 87 VKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLR-----------ARKLGLQL 135
Query: 133 NPI-----KQIKTGAFQPLSYLVTLELSKCGIEVIEDAAFVGL-------DSLEWLKLDN 180
N + K ++ + TL LS + A L S+ L L +
Sbjct: 136 NSLGPEACKDLRDLLLHDQCQITTLRLSNNPLT---AAGVAVLMEGLAGNTSVTHLSLLH 192
Query: 181 NKITTISGSNI-----LPTGLHGIDLHHNPWTCDC 210
+ + L +++ +N
Sbjct: 193 TGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTA 227
Score = 29.3 bits (66), Expect = 5.0
Identities = 23/163 (14%), Positives = 39/163 (23%), Gaps = 37/163 (22%)
Query: 76 NLQKIYLSRCRISVIDSKAF-RGL---TNLVDLDFSHNVLQTVP----SDTFPDYPSLMK 127
LQ++ ++ + A R +L L N L + D +
Sbjct: 212 QLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSSEGRQVLRDLGGAAEGGAR 271
Query: 128 LTLSGNPIKQIKTGAFQPLS------------------YLVTLELSKCGIEVIEDAAFVG 169
+ +S + LS L+ +L +
Sbjct: 272 VVVSLTEGTAVSEYWSVILSEVQRNLNSWDRARVQRHLELLLRDLEDSRGATLNPWRKAQ 331
Query: 170 L----DSLEWLKLDNNKITTISGSNIL-----PTGLHGIDLHH 203
L + L + SGS G H HH
Sbjct: 332 LLRVEGEVRALLEQLGSSGSPSGSWSHPQFEKGAGHH--HHHH 372
>1l6x_A Immunoglobulin gamma-1 heavy chain constant regio; IGG1 FC, FC
complex, immune system; HET: NAG BMA MAN GAL FUL; 1.65A
{Homo sapiens} SCOP: b.1.1.2 b.1.1.2 PDB: 2iwg_A*
3v7m_A* 3d6g_A* 3agv_A* 1oqo_A* 1oqx_A* 3v95_A* 2wah_A*
3sgj_A* 3sgk_A* 2dtq_A* 2dts_A* 3ave_A* 3ay4_A* 3do3_A*
2gj7_A* 1t83_A* 1t89_A* 1dn2_A* 3dnk_A ...
Length = 207
Score = 38.3 bits (89), Expect = 0.004
Identities = 22/116 (18%), Positives = 35/116 (30%), Gaps = 9/116 (7%)
Query: 257 ITPSTFYLEIQEGKNVSLLCKVSAI----PEAKITWLFDGVPIQNESMSASESHAVYSTE 312
+ P + + + C V + PE K W DGV + N E
Sbjct: 6 LFPPKPKDTLMISRTPEVTCVVVDVSHEDPEVKFNWYVDGVEVHNAKTKPREEQ-----Y 60
Query: 313 EGTEIKKSELLIYNSNIDDNGTFVCVAENQAGSTSSNYTIRIVLKEENVEVVTVFP 368
T S L + + + + + C N+A TI + V P
Sbjct: 61 NSTYRVVSVLTVLHQDWLNGKEYKCKVSNKALPAPIEKTISKAKGQPREPQVYTLP 116
Score = 30.6 bits (69), Expect = 1.4
Identities = 16/87 (18%), Positives = 27/87 (31%), Gaps = 11/87 (12%)
Query: 265 EIQEGKNVSLLCKVSAI--PEAKITWLFDGVPIQNESMSAS--ESHAVYSTEEGTEIKKS 320
+ VSL C V + + W +G P N + +S + S
Sbjct: 120 DELTKNQVSLTCLVKGFYPSDIAVEWESNGQPENNYKTTPPVLDSDGSFFLY-------S 172
Query: 321 ELLIYNSNIDDNGTFVCVAENQAGSTS 347
+L + S F C ++A
Sbjct: 173 KLTVDKSRWQQGNVFSCSVMHEALHNH 199
>1ow0_A IG alpha-1 chain C region; IGA1, fcari, CD89, antibody,
immunoglobulin-LIK immune system; HET: NAG FUL BMA GAL
SIA FUC MAN NDG; 3.10A {Homo sapiens} SCOP: b.1.1.2
b.1.1.2 PDB: 2qej_A*
Length = 214
Score = 38.7 bits (90), Expect = 0.004
Identities = 22/123 (17%), Positives = 37/123 (30%), Gaps = 16/123 (13%)
Query: 252 ACEPQIT---PSTFYLEIQEGKNVSLLCKVSAI---PEAKITWLFDGVPIQNESMSASES 305
AC P+++ P+ ++ G +L C ++ + TW + +
Sbjct: 1 ACHPRLSLHRPAL--EDLLLGSEANLTCTLTGLRDASGVTFTWTPSSGKSAVQGPPERDL 58
Query: 306 HAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCVAENQAGSTSSNYTIRIVLKEENVEVVT 365
YS S L + TF C A T T+ E V
Sbjct: 59 CGCYSVS-------SVLPGCAEPWNHGKTFTCTAAYPESKTPLTATLSKSGNTFRPE-VH 110
Query: 366 VFP 368
+ P
Sbjct: 111 LLP 113
Score = 33.3 bits (76), Expect = 0.17
Identities = 17/95 (17%), Positives = 32/95 (33%), Gaps = 4/95 (4%)
Query: 265 EIQEGKNVSLLCKVSAI--PEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSEL 322
E+ + V+L C + + WL + E S S T S L
Sbjct: 118 ELALNELVTLTCLARGFSPKDVLVRWLQGSQELPREKYLTWASRQEPSQGTTTFAVTSIL 177
Query: 323 LIYNSNIDDNGTFVCVAENQAGSTSSNYTIRIVLK 357
+ + TF C+ ++A +T + + +
Sbjct: 178 RVAAEDWKKGDTFSCMVGHEA--LPLAFTQKTIDR 210
>4acp_A IG gamma-1 chain C region; immune system, antibody, kifunensine;
HET: NAG; 2.49A {Homo sapiens} PDB: 2j6e_A*
Length = 240
Score = 38.4 bits (89), Expect = 0.005
Identities = 22/116 (18%), Positives = 35/116 (30%), Gaps = 9/116 (7%)
Query: 257 ITPSTFYLEIQEGKNVSLLCKVSAI----PEAKITWLFDGVPIQNESMSASESHAVYSTE 312
+ P + + + C V + PE K W DGV + N E
Sbjct: 27 LFPPKPKDTLMISRTPEVTCVVVDVSHEDPEVKFNWYVDGVEVHNAKTKPREEQ-----Y 81
Query: 313 EGTEIKKSELLIYNSNIDDNGTFVCVAENQAGSTSSNYTIRIVLKEENVEVVTVFP 368
T S L + + + + + C N+A TI + V P
Sbjct: 82 NSTYRVVSVLTVLHQDWLNGKEYKCKVSNKALPAPIEKTISKAKGQPREPQVYTLP 137
Score = 28.4 bits (63), Expect = 8.6
Identities = 16/87 (18%), Positives = 27/87 (31%), Gaps = 11/87 (12%)
Query: 265 EIQEGKNVSLLCKVSAI--PEAKITWLFDGVPIQNESMSAS--ESHAVYSTEEGTEIKKS 320
+ VSL C V + + W +G P N + +S + S
Sbjct: 141 DELTKNQVSLTCLVKGFYPSDIAVEWESNGQPENNYKATPPVLDSDGSFFLY-------S 193
Query: 321 ELLIYNSNIDDNGTFVCVAENQAGSTS 347
+L + S F C ++A
Sbjct: 194 KLTVDKSRWQQGNVFSCSVMHEALHNH 220
>1n26_A IL-6 receptor alpha chain; transmembrane, glycoprotein,
immunoglobulin domain, cytokine; HET: NAG BMA MAN NDG;
2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.2.1 b.1.2.1 PDB:
1p9m_C 2arw_A
Length = 325
Score = 38.7 bits (89), Expect = 0.005
Identities = 15/94 (15%), Positives = 29/94 (30%), Gaps = 14/94 (14%)
Query: 255 PQITPSTFYLEIQEGKNVSLLCK-VSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEE 313
P + L G +V+L C V A + W+ + ++
Sbjct: 7 PAQEVARGVLTSLPGDSVTLTCPGVEPEDNATVHWVLRKPAA-------GSHPSRWAGMG 59
Query: 314 GTEIKKSELLIYNSNIDDNGTFVCVAENQAGSTS 347
LL+ + + D+G + C + T
Sbjct: 60 RR------LLLRSVQLHDSGNYSCYRAGRPAGTV 87
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport
element (CTE), RNA recogni motif (RRM); HET: GTP CCC;
2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A
1fo1_A
Length = 267
Score = 38.4 bits (89), Expect = 0.005
Identities = 28/167 (16%), Positives = 50/167 (29%), Gaps = 9/167 (5%)
Query: 21 SCICKWKGGKQTVECVNKSLITVVEGMDPNTQVLDYTGNNLKTLHNEKFQKMGLVNLQKI 80
S + E N+ + ++ P +L+ K + Q +
Sbjct: 75 SALKAVNYKILDRE--NRRISIIINSSAPPHTILNELKPEQVEQLKLIMSKRYDGSQQAL 132
Query: 81 YLSRCRISVIDSKAFRGLTNLVDLDFSHNVLQTVPSDTFPDYPSLMKLTLSGNPIKQIK- 139
L R L L+ + + P L+ L LS N + ++
Sbjct: 133 DLKGLRSDPDLVAQNI-DVVLNRRSCMAATLRIIEEN----IPELLSLNLSNNRLYRLDD 187
Query: 140 -TGAFQPLSYLVTLELSKCGIEVIEDAAFVGLDSLEWLKLDNNKITT 185
+ Q L L LS ++ + + LE L LD N +
Sbjct: 188 MSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLCD 234
Score = 34.6 bits (79), Expect = 0.089
Identities = 15/85 (17%), Positives = 25/85 (29%), Gaps = 8/85 (9%)
Query: 123 PSLMKLTLSGNPIKQIKTGAFQPLSYLVTLELSKCGIEVIEDAAFVGLDSLEWLKLDNNK 182
S L L G + V L C + + L L L NN+
Sbjct: 127 GSQQALDLKGLRSDPDLVA----QNIDVVLNRRSCMAATLRIIEEN-IPELLSLNLSNNR 181
Query: 183 ITTISGSNIL---PTGLHGIDLHHN 204
+ + + + L ++L N
Sbjct: 182 LYRLDDMSSIVQKAPNLKILNLSGN 206
>1igt_B IGG2A intact antibody - MAB231; intact immunoglobulin V region C
region, immunoglobulin; HET: NAG FUL BMA MAN GAL FUC;
2.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 b.1.1.2
b.1.1.2
Length = 444
Score = 38.7 bits (90), Expect = 0.006
Identities = 27/155 (17%), Positives = 44/155 (28%), Gaps = 16/155 (10%)
Query: 221 STKTPMAIDPICSVPPRLSSVTIKQLSIDELACEPQ--ITPSTFYLEIQEGKNVSLLCKV 278
STK I+P P + + L P I P + + + C V
Sbjct: 208 STKVDKKIEP---RGPTIKPCPPCKCPAPNLLGGPSVFIFPPKIKDVLMISLSPIVTCVV 264
Query: 279 S----AIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGT 334
P+ +I+W + V + T S L I + +
Sbjct: 265 VDVSEDDPDVQISWFVNNVEVHTAQTQTHRED-----YNSTLRVVSALPIQHQDWMSGKE 319
Query: 335 FVCVAENQAGSTSSNYTIRIVLKEENVEVVTVFPL 369
F C N+ I + +V V+ L
Sbjct: 320 FKCKVNNKDLPAP--IERTISKPKGSVRAPQVYVL 352
Score = 37.6 bits (87), Expect = 0.014
Identities = 19/130 (14%), Positives = 42/130 (32%), Gaps = 11/130 (8%)
Query: 232 CSV--PPRLSSVTIKQLSIDELACEPQITPSTFYLEIQEGKNVSLLCKVSAI--PEAKIT 287
C V + + PQ+ E K V+L C V+ + +
Sbjct: 322 CKVNNKDLPAPIERTISKPKGSVRAPQVYVLPPPEEEMTKKQVTLTCMVTDFMPEDIYVE 381
Query: 288 WLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCVAENQAGSTS 347
W +G N + +G+ S+L + N + ++ C ++
Sbjct: 382 WTNNGKTELNYKNTEPVLD-----SDGSYFMYSKLRVEKKNWVERNSYSCSVVHEG--LH 434
Query: 348 SNYTIRIVLK 357
+++T + +
Sbjct: 435 NHHTTKSFSR 444
>2wqr_A IG epsilon chain C region; immune system, immunoglobulin domain,
glycoprotein; HET: NAG BMA MAN PG4; 1.90A {Homo sapiens}
PDB: 2y7q_B* 1o0v_A* 3h9y_A* 3h9z_A* 3ha0_A* 1fp5_A
1f6a_B 1g84_A
Length = 323
Score = 38.5 bits (89), Expect = 0.006
Identities = 19/143 (13%), Positives = 37/143 (25%), Gaps = 11/143 (7%)
Query: 232 CSV--PPRLSSVTIKQLSIDELACEPQITPSTFYLEIQEGKNVSLLCKVS----AIPEAK 285
C V + K+ + ++ K+ ++ C V + +
Sbjct: 89 CQVTYQGHTFEDSTKKCADSNPRGVSAYLSRPSPFDLFIRKSPTITCLVVDLAPSKGTVQ 148
Query: 286 ITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCVAENQAGS 345
+TW N S E GT S L + + + T+ C +
Sbjct: 149 LTWSRASGKPVNHSTRKEEKQ-----RNGTLTVTSTLPVGTRDWIEGETYQCRVTHPHLP 203
Query: 346 TSSNYTIRIVLKEENVEVVTVFP 368
+ + V F
Sbjct: 204 RALMRSTTKTSGPRAAPEVYAFA 226
>3bn3_B ICAM-5, intercellular adhesion molecule 5, telencephalin; I domain,
integrin, allosteric mobility, cell adhesi immune
system; HET: NAG; 2.10A {Homo sapiens}
Length = 196
Score = 37.7 bits (87), Expect = 0.007
Identities = 17/122 (13%), Positives = 29/122 (23%), Gaps = 14/122 (11%)
Query: 228 IDPICSV-PPRLSSVTIKQLSIDELACEPQITPSTFYLEIQEGKNVSLLCKVSA---IPE 283
P+C R + + + ++ P G+N +L C+V
Sbjct: 64 TQPVCFFRCARRTLQARGLIRTFQRPDRVELMPLP--PWQPVGENFTLSCRVPGAGPRAS 121
Query: 284 AKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCVAENQA 343
+T L + S + D F C AE
Sbjct: 122 LTLTLLRGAQELIRRS--------FAGEPPRARGAVLTATVLARREDHGANFSCRAELDL 173
Query: 344 GS 345
Sbjct: 174 RP 175
>1iga_A IGA1; immunoglobulin; NMR {Homo sapiens} PDB: 2esg_A 2qtj_A 3chn_A
1r70_B 3cm9_A
Length = 475
Score = 38.4 bits (89), Expect = 0.008
Identities = 23/125 (18%), Positives = 38/125 (30%), Gaps = 15/125 (12%)
Query: 253 CEPQITPSTFYL-----EIQEGKNVSLLCKVSAI--PEAKITWLFDGVPIQNESMSASES 305
P L E+ + V+L C + + WL + E S
Sbjct: 344 SGNTFRPEVHLLPPPSEELALNELVTLTCLARGFSPKDVLVRWLQGSQELPREKYLTWAS 403
Query: 306 HAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCVAENQAGSTSSNYTIRIVLK------EE 359
S T S L + + TF C+ ++A +T + + +
Sbjct: 404 RQEPSQGTTTFAVTSILRVAAEDWKKGDTFSCMVGHEA--LPLAFTQKTIDRLAGKPTHV 461
Query: 360 NVEVV 364
NV VV
Sbjct: 462 NVSVV 466
Score = 36.9 bits (85), Expect = 0.025
Identities = 25/157 (15%), Positives = 39/157 (24%), Gaps = 21/157 (13%)
Query: 221 STKTPMAIDPICSVPPRLSSVTIKQLSIDELACEPQITPSTFYL-----EIQEGKNVSLL 275
T + C VP + + +C P ++ G +L
Sbjct: 212 YTNPSQDVTVPCPVPSTPPTPSPSTPPTPSPSCCH---PRLSLHRPALEDLLLGSEANLT 268
Query: 276 CKVSAI---PEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDN 332
C ++ + TW + + YS S L +
Sbjct: 269 CTLTGLRDASGVTFTWTPSSGKSAVQGPPERDLCGCYSV-------SSVLPGCAEPWNHG 321
Query: 333 GTFVCVAENQAGSTSSNYTIRIVLKEENVEVVTVFPL 369
TF C A T T+ K N V L
Sbjct: 322 KTFTCTAAYPESKTPLTATLS---KSGNTFRPEVHLL 355
>1jbj_A CD3 epsilon and gamma ectodomain fragment complex; beta-sheet,
C2-SET immunoglobulin superfamily, H-bonded G strand
PAIR, single-chain; NMR {Mus musculus} SCOP: b.1.1.4
b.1.1.4 PDB: 1xmw_A
Length = 186
Score = 37.2 bits (85), Expect = 0.008
Identities = 15/105 (14%), Positives = 35/105 (33%), Gaps = 23/105 (21%)
Query: 256 QITPSTFYLEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGT 315
+ + I G +V L C + + + W +G + +
Sbjct: 2 DAENIEYKVSIS-GTSVELTCPLD--SDENLKWEKNGQELPQKH---------------- 42
Query: 316 EIKKSELLIYN-SNIDDNGTFVCVAENQAGSTSSNYTIRIVLKEE 359
L++ + S ++D+G +VC +T R+ ++
Sbjct: 43 ---DKHLVLQDFSEVEDSGYYVCYTPASNKNTYLYLKARVGSADD 84
Score = 35.6 bits (81), Expect = 0.027
Identities = 16/84 (19%), Positives = 26/84 (30%), Gaps = 20/84 (23%)
Query: 267 QEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYN 326
+ +V L C + + I WL DG I K+ + N
Sbjct: 120 RGDGSVLLTCGL---TDKTIKWLKDGSIIS-----------------PLNATKNTWNLGN 159
Query: 327 SNIDDNGTFVCVAENQAGSTSSNY 350
+ D GT+ C + + Y
Sbjct: 160 NAKDPRGTYQCQGAKETSNPLQVY 183
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain,
leucine rich repeats, BFR43, structural genomics, PSI-2;
1.95A {Bacteroides fragilis}
Length = 362
Score = 37.6 bits (86), Expect = 0.013
Identities = 24/152 (15%), Positives = 41/152 (26%), Gaps = 18/152 (11%)
Query: 73 GLVNLQKIYLSRCRISVIDSKAFRGLTNLVDLDFSHNVLQTVPSDTFPDYPSLMKLTLSG 132
+ L + + I K L +L ++ V D P+L KL L
Sbjct: 170 AMPLLNNLKIKGTNNLSIGKKPRPNLKSL-EIISGGLPDSVVEDILGSDLPNLEKLVLYV 228
Query: 133 NPIKQIKTGAFQPLS---------YLVTLELSKCGIE---VIEDAAFVGLDSLEWLKLDN 180
G L L + + V L LE + +
Sbjct: 229 GVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISA 288
Query: 181 NKITTISGSNILP-----TGLHGIDLHHNPWT 207
+T +L L I++ +N +
Sbjct: 289 GVLTDEGARLLLDHVDKIKHLKFINMKYNYLS 320
Score = 30.7 bits (68), Expect = 2.0
Identities = 13/94 (13%), Positives = 25/94 (26%), Gaps = 23/94 (24%)
Query: 69 FQKMGLVNLQKIYLSRCRISVIDSKAF---RGLTNLVDLDFSHNVLQTVPSDTFPDYPSL 125
F K NL+ + + + + F L L +D S VL + D
Sbjct: 246 FSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLD---- 301
Query: 126 MKLTLSGNPIKQIKTGAFQPLSYLVTLELSKCGI 159
+ +L + + +
Sbjct: 302 ----------------HVDKIKHLKFINMKYNYL 319
>3l5h_A Interleukin-6 receptor subunit beta; IG-like, FNIII, cell membrane,
disulfide bond, glycoprotein, immunoglobulin domain,
membrane, phosphoprotein; HET: NAG NDG BMA FUC; 3.60A
{Homo sapiens}
Length = 589
Score = 38.1 bits (88), Expect = 0.013
Identities = 17/124 (13%), Positives = 32/124 (25%), Gaps = 27/124 (21%)
Query: 255 PQITPSTFYLEIQEGKNVSLLCKVS-------AIPEAKITWLFDGVPIQNESMSASESHA 307
I+P +Q N + +C + + I W + I E + A
Sbjct: 6 GYISPE--SPVVQLHSNFTAVCVLKEKCMDYFHVNANYIVWKTNHFTIPKEQYTIINRTA 63
Query: 308 VYSTEEGTEIKKSELLIYNSNIDDNGTFVCVAENQAGSTSSNYTIRIVLKE-----ENVE 362
S + + N C + Y I I+ +N+
Sbjct: 64 ------------SSVTFTDIA-SLNIQLTCNILTFGQLEQNVYGITIISGLPPEKPKNLS 110
Query: 363 VVTV 366
+
Sbjct: 111 CIVN 114
>1hzh_H IGG, immunoglobulin heavy chain; antibody, immune system; HET: NAG
BMA MAN GAL FUC; 2.70A {Homo sapiens} SCOP: b.1.1.1
b.1.1.2 b.1.1.2 b.1.1.2 PDB: 2ig2_H 1mco_H*
Length = 457
Score = 37.5 bits (87), Expect = 0.016
Identities = 21/106 (19%), Positives = 36/106 (33%), Gaps = 9/106 (8%)
Query: 254 EPQITPSTFYLEIQEGKNVSLLCKVSAI--PEAKITWLFDGVPIQNESMSASESHAVYST 311
EPQ+ + VSL C V + + W +G P N +
Sbjct: 355 EPQVYTLPPSRDELTKNQVSLTCLVKGFYPSDIAVEWESNGQPENNYKTTPPVLD----- 409
Query: 312 EEGTEIKKSELLIYNSNIDDNGTFVCVAENQAGSTSSNYTIRIVLK 357
+G+ S+L + S F C ++A +YT + +
Sbjct: 410 SDGSFFLYSKLTVDKSRWQQGNVFSCSVMHEALHN--HYTQKSLSL 453
Score = 35.2 bits (81), Expect = 0.078
Identities = 29/167 (17%), Positives = 51/167 (30%), Gaps = 18/167 (10%)
Query: 207 TCDCLLIGLRRWLESTKTPMAIDPICSVPPRLSSVTIKQLSIDELACEPQITPSTFYLEI 266
C+ ++ P + D + PP + + S+ +P+ T +
Sbjct: 209 ICNVNHKPSNTKVDKKAEPKSCDKTHTCPPCPAPELLGGPSVFLFPPKPKDT-------L 261
Query: 267 QEGKNVSLLCKVS----AIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSEL 322
+ + C V PE K W DGV + N E T S L
Sbjct: 262 MISRTPEVTCVVVDVSHEDPEVKFNWYVDGVEVHNAKTKPREEQ-----YNSTYRVVSVL 316
Query: 323 LIYNSNIDDNGTFVCVAENQAGSTSSNYTIRIVLKEENVEVVTVFPL 369
+ + + + + C N+A T I + V+ L
Sbjct: 317 TVLHQDWLNGKEYKCKVSNKALPAPIEKT--ISKAKGQPREPQVYTL 361
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat,
signaling protein; HET: IHP; 1.80A {Arabidopsis
thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B*
3c6o_B* 3c6p_B*
Length = 594
Score = 37.2 bits (86), Expect = 0.019
Identities = 32/212 (15%), Positives = 60/212 (28%), Gaps = 31/212 (14%)
Query: 73 GLVNLQKIYLSRCRISVIDSKAF----RGLTNLVDLDFS-------HNVLQTVPSDTFPD 121
NL+++ L + + T+LV L+ S + L+ +
Sbjct: 154 TCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERL----VTR 209
Query: 122 YPSLMKLTLSGNPIKQIKTGAFQPLSYLVTLELSKCGIEVIED------AAFVGLDSLEW 175
P+L L L+ + Q L L EV D A G L
Sbjct: 210 CPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRC 269
Query: 176 LKLDNNKITTISGSNILP--TGLHGIDLHHNPWTCDCL------LIGLRR-WLESTKTPM 226
L + + + L ++L + L L+R W+
Sbjct: 270 LSGFWD-AVPAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDYIEDA 328
Query: 227 AIDPICSVPPRLSSVTIKQLSIDELACEPQIT 258
++ + S L + + + +T
Sbjct: 329 GLEVLASTCKDLRELRVFPSEPFVMEPNVALT 360
Score = 32.2 bits (73), Expect = 0.69
Identities = 19/106 (17%), Positives = 37/106 (34%), Gaps = 16/106 (15%)
Query: 76 NLQKIYLSRCRISVIDSKAF-RGLTNLVDLD------FSHNVLQTVPSDTFPDYPSLMKL 128
L++I L R ++ + + N L FS + L + + +L +L
Sbjct: 106 WLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATC----RNLKEL 161
Query: 129 TLSGNPIKQIKTGAFQPLS----YLVTLELSKCGIEVIEDAAFVGL 170
L + + + LV+L +S E + +A L
Sbjct: 162 DLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASE-VSFSALERL 206
>1i1c_A IGG2A, IG gamma-2A chain C region; FC, immune system; HET: NAG FUL
BMA MAN FUC; 2.70A {Rattus norvegicus} SCOP: b.1.1.2
b.1.1.2 PDB: 1i1a_D*
Length = 239
Score = 36.1 bits (83), Expect = 0.030
Identities = 24/117 (20%), Positives = 33/117 (28%), Gaps = 9/117 (7%)
Query: 256 QITPSTFYLEIQEGKNVSLLCKVSAI----PEAKITWLFDGVPIQNESMSASESHAVYST 311
I P + G + C V I PE + +W D V + A E
Sbjct: 19 FIFPPKTKDVLGGGLTPKVTCVVVDISQNDPEVRFSWFIDDVEVHTAQTHAPEKQ----- 73
Query: 312 EEGTEIKKSELLIYNSNIDDNGTFVCVAENQAGSTSSNYTIRIVLKEENVEVVTVFP 368
T SEL I + + TF C + A +I V
Sbjct: 74 SNSTLRSVSELPIVERDWLNGKTFKCKVNSGAFPAPIEKSISKPEGTPRGPQVYTMA 130
Score = 31.8 bits (72), Expect = 0.69
Identities = 17/97 (17%), Positives = 32/97 (32%), Gaps = 13/97 (13%)
Query: 265 EIQEGKNVSLLCKVSAI--PEAKITWLFDGVPIQNESMSAS--ESHAVYSTEEGTEIKKS 320
E VS+ C V P+ W +G P +N + ++ Y S
Sbjct: 134 EEMTQSQVSITCMVKGFYPPDIYTEWKMNGQPQENYKNTPPTMDTDGSYFLY-------S 186
Query: 321 ELLIYNSNIDDNGTFVCVAENQAGSTSSNYTIRIVLK 357
+L + TF C ++ + +T + +
Sbjct: 187 KLNVKKETWQQGNTFTCSVLHEG--LENEHTEKSLSH 221
>3m45_A Cell adhesion molecule 2; IG fold, dimer, disulfide bond,
glycoprotein, immunoglobulin membrane, transmembrane;
HET: NAG; 2.21A {Mus musculus}
Length = 108
Score = 34.1 bits (78), Expect = 0.036
Identities = 11/92 (11%), Positives = 30/92 (32%), Gaps = 6/92 (6%)
Query: 266 IQEGKNVSLLCKVSAIPEAKITWLFDGVPI--QNESMSASESHAVYSTEEGTEIKKSELL 323
+ EG L C+V + W ++ + ++ E+ +
Sbjct: 18 VVEGGTAILTCRVDQNDNTSLQWSNPAQQTLYFDDKKALRDNRIELVRASWHELS---IS 74
Query: 324 IYNSNIDDNGTFVCVAENQAGSTSSNYTIRIV 355
+ + ++ D G + C +S + ++
Sbjct: 75 VSDVSLSDEGQYTCSL-FTMPVKTSKAYLTVL 105
>3q0h_A T cell immunoreceptor with IG and ITIM domains; immune receptor,
adhesion, structural genomics, NEW YORK STR genomics
research consortium, nysgrc; 1.70A {Homo sapiens} PDB:
3rq3_A 3udw_A* 3ucr_A
Length = 117
Score = 34.1 bits (78), Expect = 0.043
Identities = 13/103 (12%), Positives = 35/103 (33%), Gaps = 25/103 (24%)
Query: 267 QEGKNVSLLCKVSAIPE--AKITWLFDGVPIQNESMSASESHAVYSTEEGTEI------- 317
++G ++ L C +S+ ++ W + A+ + + G I
Sbjct: 16 EKGGSIILQCHLSSTTAQVTQVNWEQQDQLL-----------AICNADLGWHISPSFKDR 64
Query: 318 ----KKSELLIYNSNIDDNGTFVC-VAENQAGSTSSNYTIRIV 355
L + + ++D G + C G+ + + ++
Sbjct: 65 VAPGPGLGLTLQSLTVNDTGEYFCIYHTYPDGTYTGRIFLEVL 107
>2or7_A T-cell immunoglobulin and mucin domain- containing protein 2; beta
barrel, immunoglobulin fold, IGV domain, TIM, immune
system; 1.50A {Mus musculus}
Length = 115
Score = 33.8 bits (77), Expect = 0.048
Identities = 17/103 (16%), Positives = 30/103 (29%), Gaps = 11/103 (10%)
Query: 267 QEGKNVSLLCKVSAIPEA--KITWLFDGVPI---------QNESMSASESHAVYSTEEGT 315
G V+L C S + W N + ++ Y +
Sbjct: 10 LAGHPVTLPCIYSTHLGGIVPMCWGLGECRHSYCIRSLIWTNGYTVTHQRNSRYQLKGNI 69
Query: 316 EIKKSELLIYNSNIDDNGTFVCVAENQAGSTSSNYTIRIVLKE 358
L I N+ + D G + CV E +Y + + +
Sbjct: 70 SEGNVSLTIENTVVGDGGPYCCVVEIPGAFHFVDYMLEVKPEL 112
>2oyp_A Hepatitis A virus cellular receptor 2; TIM-3, T-cell immunoglobulin
mucin, signaling protein; 1.95A {Mus musculus} PDB:
3kaa_A*
Length = 109
Score = 33.7 bits (77), Expect = 0.050
Identities = 18/103 (17%), Positives = 34/103 (33%), Gaps = 12/103 (11%)
Query: 267 QEGKNVSLLCKVSAIPEAK---ITWLFDGVPI---------QNESMSASESHAVYSTEEG 314
+ GKN L C + + W P +E + + Y +
Sbjct: 7 EVGKNAYLPCSYTLPTSGTLVPMCWGKGFCPWSQCTNELLRTDERNVTYQKSSRYQLKGD 66
Query: 315 TEIKKSELLIYNSNIDDNGTFVCVAENQAGSTSSNYTIRIVLK 357
L+I N +DD+GT+ C + +++ +K
Sbjct: 67 LNKGDVSLIIKNVTLDDHGTYCCRIQFPGLMNDKKLELKLDIK 109
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 34.2 bits (77), Expect = 0.060
Identities = 8/32 (25%), Positives = 12/32 (37%), Gaps = 11/32 (34%)
Query: 456 NDMMLYATDSGILVATNNMNTYPSYSISYQIE 487
+ LYA DS P+ +I +E
Sbjct: 27 ASLKLYADDSA-----------PALAIKATME 47
Score = 28.0 bits (61), Expect = 7.2
Identities = 8/42 (19%), Positives = 16/42 (38%), Gaps = 15/42 (35%)
Query: 313 EGTEIKK--SELLIYNSNIDDNGTFVCVAENQAGSTSSNYTI 352
E +KK + L +Y A++ A + + T+
Sbjct: 18 EKQALKKLQASLKLY-------------ADDSAPALAIKATM 46
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR,
cell cycle, protein turnover COM ligase-ligase inhibitor
complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1
c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Length = 336
Score = 35.2 bits (81), Expect = 0.061
Identities = 36/187 (19%), Positives = 62/187 (33%), Gaps = 15/187 (8%)
Query: 31 QTVECVNKSLITVVEGMDPNTQVLDYTGNNLKTLHNEKFQKMGLVNLQKIYLSRCRISVI 90
QT++ K+L V G + V+ + + +Q + LS I V
Sbjct: 50 QTLDLTGKNLHPDVTGRLLSQGVIAFRCPRSFM-DQPLAEHFSPFRVQHMDLSNSVIEVS 108
Query: 91 DSKAF-RGLTNLVDLDFSHNVLQTVPSDTFPDYPSLMKLTLSGNPIKQIKTGAFQPLS-- 147
+ L +L L +T +L++L LSG A Q L
Sbjct: 109 TLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSG--CSGFSEFALQTLLSS 166
Query: 148 --YLVTLELSKC-GI--EVIEDAAFVGLDSLEWLKLD--NNKITTISGSNILP--TGLHG 198
L L LS C + ++ A +++ L L + S ++ L
Sbjct: 167 CSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVH 226
Query: 199 IDLHHNP 205
+DL +
Sbjct: 227 LDLSDSV 233
Score = 33.7 bits (77), Expect = 0.20
Identities = 27/126 (21%), Positives = 43/126 (34%), Gaps = 19/126 (15%)
Query: 73 GLVNLQKIYLSRCRISVIDSKAFRGLTNLVDLDFSH------NVLQTVPSDTFPDYPSLM 126
LQ + L R+S +NLV L+ S LQT+ S L
Sbjct: 116 QCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSC----SRLD 171
Query: 127 KLTLSGNPI---KQIKTGAFQPLSYLVTLELSKCGIEVIEDAAFVGLD----SLEWLKL- 178
+L LS K ++ + L LS + ++ + L +L L L
Sbjct: 172 ELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGY-RKNLQKSDLSTLVRRCPNLVHLDLS 230
Query: 179 DNNKIT 184
D+ +
Sbjct: 231 DSVMLK 236
>2vol_A Murine IGG FC; FC, zinc, B30.2, nucleus, pryspry, cytoplasm, mouse
IGG, zinc-finger, DNA-binding, RNA-binding, tripartite
motif (TRIM) protein; HET: NAG MAN GAL FUC; 1.95A {Mus
musculus} PDB: 3hkf_A 1i1a_C* 1cqk_A
Length = 207
Score = 34.5 bits (79), Expect = 0.075
Identities = 20/104 (19%), Positives = 28/104 (26%), Gaps = 9/104 (8%)
Query: 269 GKNVSLLCKVS----AIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLI 324
+ C V PE + +W D V + E T SEL I
Sbjct: 18 TLTPKVTCVVVDISKDDPEVQFSWFVDDVEVHTAQTKPREEQ-----FNSTFRSVSELPI 72
Query: 325 YNSNIDDNGTFVCVAENQAGSTSSNYTIRIVLKEENVEVVTVFP 368
+ + + F C + A TI V P
Sbjct: 73 MHQDWLNGKEFKCRVNSAAFPAPIEKTISKTKGRPKAPQVYTLP 116
Score = 31.4 bits (71), Expect = 0.89
Identities = 19/97 (19%), Positives = 34/97 (35%), Gaps = 11/97 (11%)
Query: 255 PQITPSTFYLEIQEGKNVSLLCKVSAI--PEAKITWLFDGVPIQNESMSAS--ESHAVYS 310
PQ+ E VSL C ++ + + W +G P +N + ++ Y
Sbjct: 110 PQVYTLPPPKEQMAKDKVSLTCMITDFFPEDITVEWESNGQPAENYKNTQPIMDTDGSYF 169
Query: 311 TEEGTEIKKSELLIYNSNIDDNGTFVCVAENQAGSTS 347
S+L + SN + TF C ++
Sbjct: 170 VY-------SKLNVQKSNWEAGNTFTCSVLHEGLHNH 199
>3noi_A Natural cytotoxicity triggering receptor 3; immune system, innate
immunity, immunoglobulin-like I2 type natural killer
cell activation; HET: 1PG; 1.84A {Homo sapiens} PDB:
3pv6_B*
Length = 120
Score = 33.0 bits (75), Expect = 0.092
Identities = 21/101 (20%), Positives = 39/101 (38%), Gaps = 8/101 (7%)
Query: 267 QEGKNVSLLCKVSA----IPEAKITWLFD----GVPIQNESMSASESHAVYSTEEGTEIK 318
EG + L C +A + +TW D G ++N + A ++
Sbjct: 20 LEGSSAFLPCSFNASQGRLAIGSVTWFRDEVVPGKEVRNGTPEFRGRLAPLASSRFLHDH 79
Query: 319 KSELLIYNSNIDDNGTFVCVAENQAGSTSSNYTIRIVLKEE 359
++EL I + D +VC E + R+V+++E
Sbjct: 80 QAELHIRDVRGHDASIYVCRVEVLGLGVGTGNGTRLVVEKE 120
>1igy_B IGG1 intact antibody MAB61.1.3; intact immunoglobulin, V region, C
region, hinge region, immunoglobulin; HET: NAG FUL NDG
BMA MAN GAL FUC; 3.20A {Mus musculus} SCOP: b.1.1.1
b.1.1.2 b.1.1.2 b.1.1.2
Length = 434
Score = 34.9 bits (80), Expect = 0.093
Identities = 21/116 (18%), Positives = 37/116 (31%), Gaps = 9/116 (7%)
Query: 232 CSV--PPRLSSVTIKQLSIDELACEPQITPSTFYLEIQEGKNVSLLCKVSAI--PEAKIT 287
C V + + PQ+ E VSL C ++ + +
Sbjct: 312 CRVNSAAFPAPIEKTISKTKGKPRAPQVYTIPPPKEQMAKDKVSLTCMITDFFPEDITVE 371
Query: 288 WLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCVAENQA 343
W DG +N + +G+ S+L + SN + TF C ++
Sbjct: 372 WQSDGQAPENYKNTQPIMD-----TDGSYFVYSKLNVQKSNWEAGNTFTCSVLHEG 422
>1mq8_A ICAM-1, intercellular adhesion molecule-1, CD54 antigen; IG
superfamily, rossmann fold, metal mediated protein
interf immune system; HET: NAG; 3.30A {Homo sapiens}
SCOP: b.1.1.3 b.1.1.4
Length = 291
Score = 34.4 bits (78), Expect = 0.098
Identities = 15/119 (12%), Positives = 39/119 (32%), Gaps = 19/119 (15%)
Query: 254 EPQITPSTFYLEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEE 313
+ ++PS + + G +V + C S + +E
Sbjct: 1 QTSVSPSK--VILPRGGSVLVTCSTSCDQPKLLGI-----------------ETPLPKKE 41
Query: 314 GTEIKKSELLIYNSNIDDNGTFVCVAENQAGSTSSNYTIRIVLKEENVEVVTVFPLEYV 372
+ + SN+ ++ +C + G +++ + + E VE+ + + V
Sbjct: 42 LLLPGNNRKVYELSNVQEDSQPMCYSNCPDGQSTAKTFLTVYWTPERVELAPLPSWQPV 100
Score = 34.4 bits (78), Expect = 0.11
Identities = 15/125 (12%), Positives = 34/125 (27%), Gaps = 20/125 (16%)
Query: 235 PPRLSSVTIKQLSIDELACEPQITPSTFYLEIQEGKNVSLLCKVSAIP---EAKITWLFD 291
++ QL L P S ++ +++C + + EA++
Sbjct: 171 ELFENTSAPYQLQTFVLPATPPQLVSP--RVLEVDTQGTVVCSLDGLFPVSEAQVHLALG 228
Query: 292 GVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGT--FVCVAENQAGSTSSN 349
+ + + + + +D GT C S +
Sbjct: 229 DQRLN--PTVTYGNDSFSAKASVS-----------VTAEDEGTQRLTCAVILGNQSQETL 275
Query: 350 YTIRI 354
T+ I
Sbjct: 276 QTVTI 280
Score = 33.3 bits (75), Expect = 0.24
Identities = 16/125 (12%), Positives = 28/125 (22%), Gaps = 20/125 (16%)
Query: 255 PQITPSTFYLEIQEGKNVSLLCKVSA---IPEAKITWLFDGVPIQNESMSASESHAVYST 311
++ P GKN++L C+V + L ++ E + +
Sbjct: 89 VELAPLP--SWQPVGKNLTLRCQVEGGAPRANLTVVLLRGEKELKREPAVGEPAEVTTTV 146
Query: 312 EEGTEIKKSELLIYNSNIDDNGTFVCVAENQAGSTSSNYTIRIVLKEENVEVVTVFPLEY 371
+ F C E V P
Sbjct: 147 LVRRD-------------HHGANFSCRTELDLRPQGLELFENT--SAPYQLQTFVLPATP 191
Query: 372 VLIVS 376
+VS
Sbjct: 192 PQLVS 196
>1flt_X FLT-1, VGR1, FMS-like tyrosine kinase 1; complex (growth
factor-transferase), FLT-1 receptor, cystine
glycoprotein; 1.70A {Homo sapiens} SCOP: b.1.1.4 PDB:
1qsv_A 1qsz_A 1qty_X 2xac_C 1rv6_X*
Length = 95
Score = 32.4 bits (73), Expect = 0.11
Identities = 14/97 (14%), Positives = 34/97 (35%), Gaps = 12/97 (12%)
Query: 254 EPQITPSTFYLEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEE 313
+ + + EG+ + + C+V+ P +T +++ ++ + +
Sbjct: 5 VEMYSEIPEIIHMTEGRELVIPCRVT-SPNITVTL----KKFPLDTLIPDGKRIIWDSRK 59
Query: 314 GTEIKKSELLIYNSNIDDNGTFVCVAENQAGSTSSNY 350
G +I N+ + G C A +NY
Sbjct: 60 G-------FIISNATYKEIGLLTCEATVNGHLYKTNY 89
>3o3u_N Maltose-binding periplasmic protein, advanced Gly END
product-specific receptor; RAGE, AGER, scavenger
receptor; HET: MLR; 1.50A {Escherichia coli} PDB: 3cjj_A
2l7u_A* 2e5e_A
Length = 581
Score = 34.1 bits (78), Expect = 0.19
Identities = 20/88 (22%), Positives = 37/88 (42%), Gaps = 3/88 (3%)
Query: 269 GKNVSLLCKVSAI-PEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNS 327
G+ + L CK + P ++ W + + + + + + + + L +
Sbjct: 381 GEPLVLKCKGAPKKPPQRLEWKLNTGRTEAWKVLSPQGGGPWDSVARV-LPNGSLFLPAV 439
Query: 328 NIDDNGTFVCVAENQAGS-TSSNYTIRI 354
I D G F C A N+ G T SNY +R+
Sbjct: 440 GIQDEGIFRCQAMNRNGKETKSNYRVRV 467
>2or8_A Hepatitis A virus cellular receptor 1 homolog; beta barrel,
immunoglobulin fold, IGV domain, TIM, immune system;
2.50A {Mus musculus}
Length = 116
Score = 31.8 bits (72), Expect = 0.22
Identities = 21/105 (20%), Positives = 30/105 (28%), Gaps = 10/105 (9%)
Query: 267 QEGKNVSLLCKVSAIPEA-KITWLFDGVPI---------QNESMSASESHAVYSTEEGTE 316
G V+L C S W P N + + Y+ +
Sbjct: 10 VVGHPVTLPCTYSTYRGITTTCWGRGQCPSSACQNTLIWTNGHRVTYQKSSRYNLKGHIS 69
Query: 317 IKKSELLIYNSNIDDNGTFVCVAENQAGSTSSNYTIRIVLKEENV 361
L I NS D+G + C E T + +K E V
Sbjct: 70 EGDVSLTIENSVESDSGLYCCRVEIPGWFNDQKVTFSLQVKPELV 114
>1ntl_A CRRY-IG; immunology, complement, glycoprotein, SCR, CCP, immune
system; NMR {Mus musculus}
Length = 551
Score = 33.1 bits (75), Expect = 0.35
Identities = 21/137 (15%), Positives = 34/137 (24%), Gaps = 9/137 (6%)
Query: 221 STKTPMAIDPICSVPPRLSSVTIKQLSIDELACEPQITPSTFYLEIQEGKNVSLLCKVSA 280
+ + + + I P + + C V
Sbjct: 310 NPLLAKCVSRLADPEVPRDCGCKPCICTVPEVSSVFIFPPKPKDVLTITLTPKVTCVVVD 369
Query: 281 I----PEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFV 336
I PE + +W D V + E T SEL I + + + F
Sbjct: 370 ISKDDPEVQFSWFVDDVEVHTAQTQPREEQ-----FNSTFRSVSELPIMHQDWLNGKEFK 424
Query: 337 CVAENQAGSTSSNYTIR 353
C + A TI
Sbjct: 425 CRVNSAAFPAPIEKTIS 441
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 32.4 bits (73), Expect = 0.35
Identities = 20/90 (22%), Positives = 33/90 (36%), Gaps = 15/90 (16%)
Query: 486 IEQNPDLVNDAESVDKDRRAQGGEDTQDTQDKASEAASVQYSDSGSQ-CQEWGNVCYNRM 544
I Q L + ES+ K R Q D AS+ ++ + + +EW R
Sbjct: 74 IAQADRLTQEPESIRKWREEQ--RKRLQELDAASKVMEQEWREKAKKDLEEW----NQRQ 127
Query: 545 QPMQHIVLNNVYNQPADIHLTPEKFM-DRD 573
+ + N + N+ AD + F D
Sbjct: 128 S--EQVEKNKINNRIAD-----KAFYQQPD 150
>1eaj_A Coxsackie virus and adenovirus receptor; virus/viral protein
receptor, immunoglobulin V domain fold, symmetric dimer;
1.35A {Homo sapiens} SCOP: b.1.1.1 PDB: 1f5w_A 2j12_B
2j1k_A 2wbw_B* 2w9l_A* 1rsf_A 1jew_R 1kac_B 1p69_B
1p6a_B
Length = 126
Score = 31.4 bits (71), Expect = 0.41
Identities = 21/123 (17%), Positives = 43/123 (34%), Gaps = 27/123 (21%)
Query: 257 ITPSTFYLEIQEGKNVSLLCKVSAIPEAK----ITWLFDGVPIQNESMSASESHAVYSTE 312
TP E +G+ L CK + PE + I WL ++ + +YS +
Sbjct: 9 TTPEEMI-EKAKGETAYLPCKFTLSPEDQGPLDIEWLI----SPADNQKVDQVIILYSGD 63
Query: 313 EGTEIKKSE------------------LLIYNSNIDDNGTFVCVAENQAGSTSSNYTIRI 354
+ + + + + N + D GT+ C + G + + +
Sbjct: 64 KIYDDYYPDLKGRVHFTSNDLKSGDASINVTNLQLSDIGTYQCKVKKAPGVANKKIHLVV 123
Query: 355 VLK 357
++K
Sbjct: 124 LVK 126
>2rgs_A I, IG gamma-2B heavy chain; FC-fragment, immunoglobulin,
glycosylation, immune system; HET: NAG FUC MAN GAL;
2.13A {Mus musculus}
Length = 218
Score = 32.2 bits (73), Expect = 0.42
Identities = 20/118 (16%), Positives = 37/118 (31%), Gaps = 23/118 (19%)
Query: 232 CSVPPRLSSVTIKQLSIDELACEPQITPSTFYLEIQEGKNVSLLCKVSAI--PEAKITWL 289
R V I ++L+ K+VSL C V + + W
Sbjct: 111 IKGLVRAPQVYILPPPAEQLS----------------RKDVSLTCLVVGFNPGDISVEWT 154
Query: 290 FDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCVAENQAGSTS 347
+G +N +A +G+ S+L + S + +F C ++
Sbjct: 155 SNGHTEENYKDTAPVLD-----SDGSYFIYSKLNMKTSKWEKTDSFSCNVRHEGLKNY 207
>3ef2_A Agglutinin, lectin; beta-trefoil, calcium-binding,
carbohydrate-binding, sugar-binding, sugar binding
protein; HET: FUC GAL GLA; 1.80A {Marasmius oreades}
PDB: 2iho_A*
Length = 293
Score = 32.0 bits (72), Expect = 0.66
Identities = 24/118 (20%), Positives = 34/118 (28%), Gaps = 20/118 (16%)
Query: 431 YTSVNATSATCMDKVNGGYIIADGHN-DMMLYATDSGILVATNNMNTY-----PSYSISY 484
Y N S T +D VNG +DG D G + + S
Sbjct: 111 YKIQNYGSKTFVDLVNGD--SSDGAKIAGWTGTWDEG---NPHQKWYFNRMSVSSAEAQA 165
Query: 485 QIEQNPDLVNDAESVDKDRRAQGGEDTQDTQDKASEAASVQYSDSGSQCQEWGNVCYN 542
I +NP + D + TQ + DSG +W Y+
Sbjct: 166 AIARNPHIHGTYRGYILDGEYLVLPNATFTQ---------IWKDSGLPGSKWREQIYD 214
>2edo_A CD48 antigen; beta-sandwich, IG-fold, B-lymphocyte activation
marker blast-1, BCM1 surface antigen, leukocyte antigen
MEM-102, TCT.1; NMR {Homo sapiens}
Length = 121
Score = 30.7 bits (69), Expect = 0.71
Identities = 15/84 (17%), Positives = 31/84 (36%), Gaps = 3/84 (3%)
Query: 268 EGKNVSLLCKVSAIPEAK-ITWLFDGVP--IQNESMSASESHAVYSTEEGTEIKKSELLI 324
G NV+L S K +TW + ++ +S + + + + + L I
Sbjct: 18 SGSNVTLNISESLPENYKQLTWFYTFDQKIVEWDSRKSKYFESKFKGRVRLDPQSGALYI 77
Query: 325 YNSNIDDNGTFVCVAENQAGSTSS 348
+DN T++ + G+
Sbjct: 78 SKVQKEDNSTYIMRVLKKTGNEQE 101
>1zxq_A ICAM-2, intercellular adhesion molecule-2; immunoglobulin fold,
cell adhesion, glycoprotein, transmembr; HET: NAG; 2.20A
{Homo sapiens} SCOP: b.1.1.3 b.1.1.4
Length = 192
Score = 30.9 bits (69), Expect = 1.1
Identities = 10/83 (12%), Positives = 23/83 (27%), Gaps = 11/83 (13%)
Query: 266 IQEGKNVSLLCKVSA---IPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSEL 322
+ GK+ ++ C+V + + + E+ + +
Sbjct: 100 VAVGKSFTIECRVPTVEPLDSLTLFLFRGNETLHYET--------FGKAAPAPQEATATF 151
Query: 323 LIYNSNIDDNGTFVCVAENQAGS 345
D + F C+A S
Sbjct: 152 NSTADREDGHRNFSCLAVLDLMS 174
>3bia_X T-cell immunoglobulin and mucin domain- containing protein 4; beta
barrel, immunoglobulin fold, IGV domain, TIM,
glycoprotein; HET: TLA; 2.20A {Mus musculus} PDB:
3bi9_X* 3bib_X*
Length = 116
Score = 29.5 bits (66), Expect = 1.3
Identities = 15/86 (17%), Positives = 28/86 (32%), Gaps = 11/86 (12%)
Query: 267 QEGKNVSLLCKVSAIPEA--KITWLFDGVPI---QNESMSASESHAVYSTEEGTEIKKSE 321
G+ V+L C + ++ + W P E + + + +
Sbjct: 9 FLGQPVTLPCHYLSWSQSRNSMCWGKGSCPNSKCNAELLRTDGTRIISRKSTKYTLLGKV 68
Query: 322 ------LLIYNSNIDDNGTFVCVAEN 341
L I N+N D+G + C E
Sbjct: 69 QFGEVSLTISNTNRGDSGVYCCRIEV 94
>4atg_A TAF6; transcription, TFIID; HET: NHE; 1.89A {Antonospora locustae}
Length = 196
Score = 30.2 bits (68), Expect = 1.6
Identities = 11/31 (35%), Positives = 18/31 (58%), Gaps = 4/31 (12%)
Query: 720 HMIDSLLKNRDVKVGSHLHPHRGLMLPPVLT 750
+ SL+KN+ V + +LH +LP +LT
Sbjct: 68 ALYFSLIKNKHVFIDPYLHQ----ILPSLLT 94
>3ic9_A Dihydrolipoamide dehydrogenase; APC62701, colwellia psychrer 34H,
structural genomics, PSI-2; HET: FAD; 2.15A {Colwellia
psychrerythraea}
Length = 492
Score = 31.0 bits (71), Expect = 1.8
Identities = 9/37 (24%), Positives = 13/37 (35%), Gaps = 3/37 (8%)
Query: 629 ASYEHYAPADVRYNIEGYPSASPTPYSSAPRVTFTEP 665
A+ + N YP + + V FTEP
Sbjct: 324 AADDGKVAGT---NAGAYPVIAQGQRRAPLSVVFTEP 357
>3p73_B Beta-2-microglobulin; IG-like C1-type (immunoglobulin-like) domain,
histocompatibi antigen, immune system; HET: 16A; 1.32A
{Gallus gallus} PDB: 3p77_B* 3bev_B 3bew_B 3jvg_C*
2yez_B 2yf5_B 2yf6_B 2yf1_B*
Length = 99
Score = 28.4 bits (64), Expect = 2.6
Identities = 11/38 (28%), Positives = 16/38 (42%), Gaps = 2/38 (5%)
Query: 266 IQEGKNVSLLCKVSAI--PEAKITWLFDGVPIQNESMS 301
G L C + P+ IT + DGVP++ S
Sbjct: 15 ASAGTKNVLNCFAAGFHPPKISITLMKDGVPMEGAQYS 52
>1xt5_A Variable region-containing chitin-binding protein 3; innate
immunity, VCBP, primordial antigen receptor, florida
lancelet, amphioxus; 1.15A {Branchiostoma floridae}
Length = 135
Score = 29.1 bits (64), Expect = 2.7
Identities = 16/115 (13%), Positives = 33/115 (28%), Gaps = 22/115 (19%)
Query: 264 LEIQEGKNVSLLCKVSAIPEAK---ITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKS 320
+E+ G V L C + + I+WL P ++ + + E
Sbjct: 14 VEVHAGGTVELPCSYQLANDTQPPVISWLKGASPDRSTKVFKGNYNWQGEGLGFVESDSY 73
Query: 321 E-------------------LLIYNSNIDDNGTFVCVAENQAGSTSSNYTIRIVL 356
+ L + + + D G + C + T + V+
Sbjct: 74 KESFGDFLGRASVANLAAPTLRLTHVHPQDGGRYWCQVAQWSIRTEFGLDAKSVV 128
>3uly_B Charged multivesicular BODY protein 5; beta-hairpin, ESCRT-III,
CHMPS, membrane protein-transport P complex, BROX; 2.60A
{Homo sapiens} PDB: 3um1_B
Length = 69
Score = 27.6 bits (61), Expect = 3.0
Identities = 13/36 (36%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
Query: 552 LNNVYNQPADIHLTPEKFMDRDGYPVD-FGLPKVPT 586
L+ + PA P ++DG VD FGLP++P
Sbjct: 33 LDEAASAPAIPEGVPTDTKNKDGVLVDEFGLPQIPA 68
>3nl4_L Antigen binding fragment, immunoglobulin IGG - LI; FAB, rabbit,
conformation-specific, amyloid, immune system; 1.54A
{Oryctolagus cuniculus}
Length = 213
Score = 29.5 bits (67), Expect = 3.1
Identities = 15/83 (18%), Positives = 29/83 (34%), Gaps = 28/83 (33%)
Query: 265 EIQEGKNVSLLCKVSA-IPEAKITWLFDGVPIQ-------------NESMSAS------- 303
+ G V+++C + P+ +TW DG + + + S
Sbjct: 126 LVATGT-VTIVCVANKYFPDVTVTWEVDGTTQTTGIENSKTPQNSADCTYNLSSTLTLTS 184
Query: 304 ---ESHAVYS---TEEGTEIKKS 320
SH Y+ T+ T + +S
Sbjct: 185 TEYNSHKEYTCKVTQGTTSVVQS 207
>3qib_D 2B4 beta chain; IG domain, immune system; HET: NAG FUC BMA; 2.70A
{Mus musculus}
Length = 270
Score = 29.6 bits (66), Expect = 3.9
Identities = 12/92 (13%), Positives = 31/92 (33%), Gaps = 4/92 (4%)
Query: 265 EIQEGKNVSLLCKVSAI--PEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSEL 322
EI + +L+C + +++W +G + + + + + S
Sbjct: 160 EISHTQKATLVCLATGFYPDHVELSWWVNGKEVHSGVCTDPQPLKEQPALNDSRYALSSR 219
Query: 323 LIYNSN--IDDNGTFVCVAENQAGSTSSNYTI 352
L ++ + F C + S + +T
Sbjct: 220 LRVSATFWQNPRNHFRCQVQFYGLSENDEWTQ 251
>1xhn_A CREG, cellular repressor of E1A-stimulated genes; beta-barrel,
unknown function; HET: MSE; 1.95A {Homo sapiens} SCOP:
b.45.1.1
Length = 184
Score = 29.0 bits (64), Expect = 4.0
Identities = 12/57 (21%), Positives = 19/57 (33%), Gaps = 3/57 (5%)
Query: 603 HRRHTAANPNNRYSREAEFLSRSSQPASYEHYAPADVRYNIEGYPSASPTPYSSAPR 659
H H + P +R A F++ + + A + G P A S P
Sbjct: 7 HHHHGSLPPREDAARVARFVTHV---SDWGALATISTLEAVRGRPFADVLSLSDGPP 60
>2q86_A Valpha14 TCR; INKT cells, TCR, glycolipid recognition, innate
immunity, IM system; HET: NAG BMA MAN FUC; 1.85A {Mus
musculus} PDB: 3quy_C* 3o9w_C* 3qux_C* 3o8x_C* 3quz_C*
3rtq_C* 3rzc_C* 3ta3_C* 3tvm_C* 3qi9_C* 3ard_C* 3are_C*
3arf_C* 3arg_C* 3he6_C* 3he7_C* 3arb_C* 3scm_C* 3sda_C*
3sdc_C* ...
Length = 229
Score = 29.3 bits (65), Expect = 4.3
Identities = 39/200 (19%), Positives = 68/200 (34%), Gaps = 21/200 (10%)
Query: 256 QITPSTFYLEIQEGKNVSLLCKVSAIPEAKITW---LFDGVP---IQNESMSASESHAVY 309
Q+ S L +++G+N L C S P+ + W S+ Y
Sbjct: 3 QVEQSPQSLVVRQGENCVLQCNYSVTPDNHLRWYKQDTGKGLVLLTVLVDQKDKTSNGRY 62
Query: 310 STEEGTEIKKSELLIYNSNIDDNGTFVC-VAENQAGSTSSNYTIRIVLKEENVEVVTVFP 368
S + K S L I + +DD T+ C V + + S + ++ +N E V+
Sbjct: 63 SATLDKDAKHSTLHITATLLDDTATYFCVVGDRGSALFGSGTQLIVIPYIQNPE-PAVYQ 121
Query: 369 LEYVLIVSGIISVCSLVLIFLLVLCFLCFRRKKKKLKKKDESDKNVNGSNENVVKNLRES 428
L+ S ++C F F + K + + ++ +S
Sbjct: 122 LK--DPRSQDSTLC----------LFTDFDSQINVPKTMESGTFITDKCVLDMKAMDSKS 169
Query: 429 PKYTS-VNATSATCMDKVNG 447
+ N TS TC D
Sbjct: 170 NGAIAWSNQTSFTCQDIFKE 189
>3gbl_A BETA2-microglobulin; immune response, immunoglobulin domain, MHC I,
secreted, immune system; 2.10A {Ctenopharyngodon idella}
Length = 97
Score = 27.7 bits (62), Expect = 4.4
Identities = 11/35 (31%), Positives = 17/35 (48%), Gaps = 2/35 (5%)
Query: 269 GKNVSLLCKVSAI--PEAKITWLFDGVPIQNESMS 301
GK +L+C VS P+ I L +G I + +
Sbjct: 18 GKENTLICYVSGFHPPDISIELLKNGEVIADAQQT 52
>2bnu_A TCR alpha chain, T-cell receptor alpha chain C region; superagonist
peptide T-cell vaccines, transmembrane, immunoglobulin
domain; 1.40A {Homo sapiens} PDB: 2bnq_D 2bnr_D 2f54_D
2pyf_A* 2pye_D* 2f53_D 2p5e_D* 2p5w_D* 3mv7_D 3mv8_D
3mv9_D 3utt_D 2cdg_A
Length = 203
Score = 28.8 bits (64), Expect = 4.8
Identities = 17/97 (17%), Positives = 35/97 (36%), Gaps = 6/97 (6%)
Query: 256 QITPSTFYLEIQEGKNVSLLCKVSAIPEAKITW---LFDGVP---IQNESMSASESHAVY 309
++T L + EG+N+ L C + + W + +S ++
Sbjct: 2 EVTQIPAALSVPEGENLVLNCSFTDSAIYNLQWFRQDPGKGLTSLLLIQSSQREQTSGRL 61
Query: 310 STEEGTEIKKSELLIYNSNIDDNGTFVCVAENQAGST 346
+ +S L I S D+ T++C +G +
Sbjct: 62 NASLDKSSGRSTLYIAASQPGDSATYLCAVRPTSGGS 98
>2yiu_B Cytochrome C1, heme protein; oxidoreductase; HET: HEM SMA HEC;
2.70A {Paracoccus denitrificans}
Length = 263
Score = 29.2 bits (65), Expect = 5.2
Identities = 11/30 (36%), Positives = 15/30 (50%), Gaps = 5/30 (16%)
Query: 385 VLIFLLVLCFLCFRRKKK-----KLKKKDE 409
+IFL+VL L + KK K +K E
Sbjct: 234 SVIFLIVLAALLYLTNKKLWQPIKHPRKPE 263
>1pko_A Myelin oligodendrocyte glycoprotein; IGV-domain, immune system;
1.45A {Rattus norvegicus} SCOP: b.1.1.1 PDB: 1pkq_E
3csp_A 1py9_A
Length = 139
Score = 28.0 bits (62), Expect = 5.8
Identities = 15/92 (16%), Positives = 24/92 (26%), Gaps = 13/92 (14%)
Query: 269 GKNVSLLCKVSAIPEAK---ITWLFDGVP----------IQNESMSASESHAVYSTEEGT 315
G L C++S A + W Q+ + +E
Sbjct: 21 GDEAELPCRISPGKNATGMEVGWYRSPFSRVVHLYRNGKDQDAEQAPEYRGRTELLKESI 80
Query: 316 EIKKSELLIYNSNIDDNGTFVCVAENQAGSTS 347
K L I N D G + C + +
Sbjct: 81 GEGKVALRIQNVRFSDEGGYTCFFRDHSYQEE 112
>3o81_A Beta-2-microglobulin; IG-like C1-type (immunoglobulin-like) domain,
histocompatibi antigen, MHC class I molecule from B21
chicken, immune SYST; 2.00A {Gallus gallus}
Length = 119
Score = 27.8 bits (62), Expect = 6.5
Identities = 11/35 (31%), Positives = 16/35 (45%), Gaps = 2/35 (5%)
Query: 269 GKNVSLLCKVSAI--PEAKITWLFDGVPIQNESMS 301
G L C + P+ IT + DGVP++ S
Sbjct: 38 GTKNVLNCFAAGFHPPKISITLMKDGVPMEGAQYS 72
>3c6l_A TCR 2W20 alpha chain; TCR-PMHC complex; 3.40A {Mus musculus} SCOP:
b.1.1.1 b.1.1.2
Length = 185
Score = 28.3 bits (63), Expect = 6.7
Identities = 20/93 (21%), Positives = 31/93 (33%), Gaps = 6/93 (6%)
Query: 256 QITPSTFYLEIQEGKNVSLLCKVSAIPEAKITW---LFDGVP---IQNESMSASESHAVY 309
Q+ S L + EG+ L C W P I +S + +
Sbjct: 2 QVRQSPQSLTVWEGETAILNCSYEDSTFDYFPWYHQFPGESPALLIAIRPVSNKKEDGRF 61
Query: 310 STEEGTEIKKSELLIYNSNIDDNGTFVCVAENQ 342
+ KK L I +S D+ T+ C A +
Sbjct: 62 TIFFNKREKKFSLHIADSQPGDSATYFCAASDN 94
>1uct_A Immunoglobulin alpha FC receptor; beta stands, immune system; 2.10A
{Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1ovz_A*
1ow0_C*
Length = 218
Score = 28.7 bits (64), Expect = 6.9
Identities = 18/97 (18%), Positives = 39/97 (40%), Gaps = 19/97 (19%)
Query: 245 QLSIDELACEPQITPSTFYLEIQEGKNVSLLCKVSAIPEAKITWLFDG--VPIQNESMSA 302
+L + L +P ++ L + G+N+SL C + IP + + +G Q+ +
Sbjct: 97 ELVVTGLYGKPFLSADR-GLVLMPGENISLTCSSAHIPFDRFSLAKEGELSLPQH---QS 152
Query: 303 SESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCVA 339
E A +S + +++ +G + C
Sbjct: 153 GEHPANFS-------------LGPVDLNVSGIYRCYG 176
>3eyr_A Uncharacterized lipoprotein YCEB; ER542 NESG X-RAY YCEB_COLI
P0AB26, structural genomics, PSI- 2, protein structure
initiative; 2.01A {Escherichia coli K12} PDB: 3l6i_A
Length = 178
Score = 28.1 bits (62), Expect = 9.0
Identities = 17/82 (20%), Positives = 31/82 (37%), Gaps = 7/82 (8%)
Query: 75 VNLQKIYLSRCRISVIDSKAFRGLTNLVDLDFSHNVLQTVPSDTFPDYPSLMKLTLSGNP 134
+ L + + ++ + S+ R N V L N+ F + MKL L P
Sbjct: 38 IGLPGVADAHIVLTNLTSQIGREEPNKVTLTGDANLDMNSL---FGSQKATMKLKLKALP 94
Query: 135 IKQIKTGAFQPLSYLVTLELSK 156
+ + GA +L +E+
Sbjct: 95 VFDKEKGAI----FLKEMEVVD 112
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein
structure initiative, southeast collaboratory for
structural genomics secsg; 1.80A {Caenorhabditis
elegans} SCOP: c.10.1.1
Length = 197
Score = 27.9 bits (62), Expect = 9.6
Identities = 16/117 (13%), Positives = 39/117 (33%), Gaps = 19/117 (16%)
Query: 123 PSLMKLTLSGNPIKQIKTGAFQPL-------SYLVTLELSKCGIEVIEDAAFVGL----D 171
L ++ + N +K++ + L ++ L+ I E + L
Sbjct: 41 TDLKEVNI--NNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSP 98
Query: 172 SLEWLKLDNNKITTISGSNILPTGLHGIDLHHNPWTCDCLLIGLRRWLESTKTPMAI 228
SL L +++N +T + +L + + R+ + + M +
Sbjct: 99 SLRVLNVESNFLTPELLARLLRS------TLVTQSIVEFKADNQRQSVLGNQVEMDM 149
>1iam_A ICAM-1, CD54, intercellular adhesion molecule-1; rhinovirus
receptor, cell adhesion, integrin ligand, glycopr LFA-1
ligand, immunoglobulin fold; HET: NAG; 2.10A {Homo
sapiens} SCOP: b.1.1.3 b.1.1.4 PDB: 1ic1_A* 1d3l_A
1d3e_I 1d3i_I 3tcx_A
Length = 185
Score = 27.8 bits (61), Expect = 9.7
Identities = 10/83 (12%), Positives = 20/83 (24%), Gaps = 16/83 (19%)
Query: 266 IQEGKNVSLLCKVSA---IPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSEL 322
GK ++L C+V + + L ++ E + + +
Sbjct: 98 QPVGKQLTLRCQVEGGAPRAQLTVVLLRGEKELKREPAVGEPAEVTTTVLVRRD------ 151
Query: 323 LIYNSNIDDNGTFVCVAENQAGS 345
F C E
Sbjct: 152 -------HHGAQFSCRTELDLRP 167
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.315 0.131 0.389
Gapped
Lambda K H
0.267 0.0811 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 11,252,631
Number of extensions: 660279
Number of successful extensions: 4040
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1795
Number of HSP's successfully gapped: 689
Length of query: 767
Length of database: 6,701,793
Length adjustment: 101
Effective length of query: 666
Effective length of database: 3,881,772
Effective search space: 2585260152
Effective search space used: 2585260152
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 61 (27.1 bits)