BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy12045
         (117 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2EP5|A Chain A, Structural Study Of Project Id St1242 From Sulfolobus
           Tokodaii Strain7
 pdb|2EP5|B Chain B, Structural Study Of Project Id St1242 From Sulfolobus
           Tokodaii Strain7
 pdb|2EP5|C Chain C, Structural Study Of Project Id St1242 From Sulfolobus
           Tokodaii Strain7
 pdb|2EP5|D Chain D, Structural Study Of Project Id St1242 From Sulfolobus
           Tokodaii Strain7
          Length = 350

 Score = 28.1 bits (61), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 16/54 (29%), Positives = 24/54 (44%), Gaps = 1/54 (1%)

Query: 60  GHGIAICQCKSAKIVTTKTIPMQVDGEACRVNPSIILLNHLNKAPMLAKRKGCK 113
              I +   K+ KIV +   P ++D +   +NP  I   HL       +RKG K
Sbjct: 90  AESIELELVKNGKIVVSNASPFRMDPDVPLINPE-INWEHLELLKFQKERKGWK 142


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.321    0.133    0.400 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,724,799
Number of Sequences: 62578
Number of extensions: 42639
Number of successful extensions: 66
Number of sequences better than 100.0: 1
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 66
Number of HSP's gapped (non-prelim): 1
length of query: 117
length of database: 14,973,337
effective HSP length: 80
effective length of query: 37
effective length of database: 9,967,097
effective search space: 368782589
effective search space used: 368782589
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 45 (21.9 bits)