Query psy12045
Match_columns 117
No_of_seqs 102 out of 260
Neff 3.6
Searched_HMMs 46136
Date Fri Aug 16 17:12:58 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy12045.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/12045hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0782|consensus 99.8 1.2E-19 2.6E-24 163.0 3.4 63 51-113 639-701 (1004)
2 KOG1169|consensus 99.7 4.1E-19 8.8E-24 158.3 3.4 59 52-110 558-621 (634)
3 KOG1170|consensus 99.5 3.5E-15 7.7E-20 137.2 3.2 51 60-110 742-794 (1099)
4 PF00609 DAGK_acc: Diacylglyce 99.1 3.8E-11 8.2E-16 89.1 3.1 36 52-87 124-161 (161)
5 TIGR00147 lipid kinase, YegS/R 97.0 0.0011 2.4E-08 52.1 4.7 37 63-99 250-286 (293)
6 PRK13057 putative lipid kinase 96.9 0.0016 3.4E-08 51.6 4.8 45 54-98 227-275 (287)
7 smart00045 DAGKa Diacylglycero 96.8 0.00073 1.6E-08 49.7 2.3 31 57-87 128-160 (160)
8 PRK12361 hypothetical protein; 95.7 0.0099 2.2E-07 51.5 3.5 45 62-107 496-540 (547)
9 PRK13337 putative lipid kinase 95.5 0.024 5.3E-07 45.3 4.6 45 53-97 235-283 (304)
10 TIGR03702 lip_kinase_YegS lipi 95.3 0.033 7.2E-07 44.3 4.8 35 64-98 244-278 (293)
11 PRK13054 lipid kinase; Reviewe 95.2 0.025 5.4E-07 45.2 3.9 44 63-107 249-292 (300)
12 PRK00861 putative lipid kinase 94.7 0.041 9E-07 43.7 3.8 35 63-97 252-286 (300)
13 PRK13059 putative lipid kinase 94.7 0.061 1.3E-06 43.1 4.7 36 63-98 248-283 (295)
14 PRK13055 putative lipid kinase 93.8 0.14 2.9E-06 42.0 5.2 54 53-107 239-299 (334)
15 PF10446 DUF2457: Protein of u 92.9 0.022 4.8E-07 50.5 -0.8 10 88-97 148-157 (458)
16 PRK11914 diacylglycerol kinase 91.6 0.27 5.8E-06 39.2 4.0 35 63-98 260-294 (306)
17 PF09026 CENP-B_dimeris: Centr 91.1 0.064 1.4E-06 39.3 0.0 7 53-59 46-52 (101)
18 COG1597 LCB5 Sphingosine kinas 88.4 0.66 1.4E-05 38.0 3.9 44 63-107 251-294 (301)
19 PLN02958 diacylglycerol kinase 78.2 2.9 6.3E-05 36.6 3.9 53 53-107 400-463 (481)
20 PRK14075 pnk inorganic polypho 75.2 5.3 0.00011 32.1 4.3 44 63-107 191-235 (256)
21 PLN02204 diacylglycerol kinase 63.4 8.9 0.00019 35.3 3.7 43 63-106 552-595 (601)
22 PF08207 EFP_N: Elongation fac 61.1 8.3 0.00018 24.6 2.2 15 75-89 5-19 (58)
23 PF03153 TFIIA: Transcription 52.2 11 0.00023 31.3 2.1 11 62-72 332-342 (375)
24 PF06581 p31comet: Mad1 and Cd 50.4 13 0.00029 31.3 2.3 31 67-97 227-261 (264)
25 PF02311 AraC_binding: AraC-li 42.6 47 0.001 21.5 3.7 41 68-108 23-63 (136)
26 PLN03078 Putative tRNA pseudou 42.0 20 0.00043 32.6 2.3 38 64-107 331-369 (513)
27 PF07883 Cupin_2: Cupin domain 37.2 93 0.002 18.6 4.3 39 70-108 21-59 (71)
28 PF07351 DUF1480: Protein of u 35.7 47 0.001 23.5 2.9 40 68-110 26-67 (80)
29 KOG0699|consensus 34.0 20 0.00043 32.5 1.0 11 49-59 309-319 (542)
30 PRK12426 elongation factor P; 31.2 33 0.00071 27.1 1.7 15 75-89 7-21 (185)
31 PF02088 Ornatin: Ornatin; In 28.9 19 0.00041 22.5 0.0 31 66-96 2-32 (41)
32 PF14310 Fn3-like: Fibronectin 26.6 91 0.002 19.9 3.0 35 66-100 32-68 (71)
33 PRK15301 hypothetical protein; 24.2 56 0.0012 26.2 1.9 27 63-92 86-112 (186)
34 PRK03298 hypothetical protein; 24.0 57 0.0012 26.9 2.0 20 87-106 48-67 (224)
35 COG1917 Uncharacterized conser 21.3 1.8E+02 0.0039 20.1 3.9 33 75-107 71-103 (131)
36 PF12852 Cupin_6: Cupin 21.3 2.4E+02 0.0052 20.6 4.7 49 61-109 26-78 (186)
37 PF04050 Upf2: Up-frameshift s 21.0 51 0.0011 24.9 1.1 13 47-59 63-75 (170)
38 PRK06788 flagellar motor switc 20.3 20 0.00044 26.5 -1.2 28 64-91 54-83 (119)
No 1
>KOG0782|consensus
Probab=99.77 E-value=1.2e-19 Score=163.05 Aligned_cols=63 Identities=46% Similarity=0.788 Sum_probs=60.3
Q ss_pred HhHHHHhhcCccccceecceEEEEeecCcceeecCccceecCcEEEEeecCcccccccccCCc
Q psy12045 51 EEEEELQAGGHGIAICQCKSAKIVTTKTIPMQVDGEACRVNPSIILLNHLNKAPMLAKRKGCK 113 (117)
Q Consensus 51 e~LaqLQvGgsg~RLaQc~~VrItt~k~LPmQVDGEPW~Q~Ps~I~Is~~nQa~ML~k~K~~r 113 (117)
-+||.|||||||.||+||+.|+++|+|.||||||||||+++|+.|+|.++|||+||+|.|++-
T Consensus 639 asLAALQvGGhGERl~QCreV~l~T~KaIPmQVDGEPC~LAps~Iri~lrnqa~Mvqk~KRR~ 701 (1004)
T KOG0782|consen 639 ASLAALQVGGHGERLAQCREVRLITNKAIPMQVDGEPCLLAPSIIRIGLRNQAPMVQKEKRRG 701 (1004)
T ss_pred HHHHHHhhcCcchhhhhceeEEEEeccccceeecCcchhcchhheEEeecccchHHHHHhhcc
Confidence 479999999999999999999999999999999999999999999999999999999998653
No 2
>KOG1169|consensus
Probab=99.75 E-value=4.1e-19 Score=158.30 Aligned_cols=59 Identities=41% Similarity=0.534 Sum_probs=53.0
Q ss_pred hHHHHhhcCc-ccccee----cceEEEEeecCcceeecCccceecCcEEEEeecCccccccccc
Q psy12045 52 EEEELQAGGH-GIAICQ----CKSAKIVTTKTIPMQVDGEACRVNPSIILLNHLNKAPMLAKRK 110 (117)
Q Consensus 52 ~LaqLQvGgs-g~RLaQ----c~~VrItt~k~LPmQVDGEPW~Q~Ps~I~Is~~nQa~ML~k~K 110 (117)
|++++|+|+. ++|||| |..++|.+++++|||||||||||+||+|+|||+||++||++..
T Consensus 558 h~~~~qvgL~~a~rigQ~~a~~~~~~i~~~k~~PMQiDGEPW~Q~p~tI~Ithk~q~~mL~~~~ 621 (634)
T KOG1169|consen 558 HLLQEQVGLESALRIGQRLAQCSERVIGTKKTFPMQIDGEPWMQPPCTIEITHKNQAPMLMKAA 621 (634)
T ss_pred hhhhhhhccchhhHHHHHhhccEEEEeccccCcceecCCccccCCCceEEEEecchHhhhhccc
Confidence 7899999985 688885 5555599999999999999999999999999999999999875
No 3
>KOG1170|consensus
Probab=99.53 E-value=3.5e-15 Score=137.17 Aligned_cols=51 Identities=43% Similarity=0.632 Sum_probs=47.0
Q ss_pred CccccceecceEEEEee--cCcceeecCccceecCcEEEEeecCccccccccc
Q psy12045 60 GHGIAICQCKSAKIVTT--KTIPMQVDGEACRVNPSIILLNHLNKAPMLAKRK 110 (117)
Q Consensus 60 gsg~RLaQc~~VrItt~--k~LPmQVDGEPW~Q~Ps~I~Is~~nQa~ML~k~K 110 (117)
++..|||||++|+|++. ..||||||||||.|||+.|+|.|+|.|.||.|++
T Consensus 742 LqhHRIAQCr~V~I~IlGDE~IPVQvDGEaWlQPPG~irIvHKNRaQmL~Rnr 794 (1099)
T KOG1170|consen 742 LQHHRIAQCRHVRIVILGDEGIPVQVDGEAWLQPPGIIRIVHKNRAQMLARNR 794 (1099)
T ss_pred hhhhhhhhceEEEEEEecCCCCceeecCccccCCCceeeeehhhhHHHhhcch
Confidence 56689999999999975 6799999999999999999999999999998864
No 4
>PF00609 DAGK_acc: Diacylglycerol kinase accessory domain; InterPro: IPR000756 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. Diacylglycerol (DAG) is a second messenger that acts as a protein kinase C activator. The DAG kinase domain is assumed to be an accessory domain. Upon cell stimulation, DAG kinase converts DAG into phosphatidate, initiating the resynthesis of phosphatidylinositols and attenuating protein kinase C activity. It catalyses the reaction: ATP + 1,2-diacylglycerol = ADP + 1,2-diacylglycerol 3-phosphate. The enzyme is stimulated by calcium and phosphatidylserine and phosphorylated by protein kinase C. This domain is always associated with IPR001206 from INTERPRO.; GO: 0004143 diacylglycerol kinase activity, 0007205 activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway
Probab=99.11 E-value=3.8e-11 Score=89.10 Aligned_cols=36 Identities=33% Similarity=0.508 Sum_probs=34.0
Q ss_pred hHHHHhhcCc-cccceecceEEEEeec-CcceeecCcc
Q psy12045 52 EEEELQAGGH-GIAICQCKSAKIVTTK-TIPMQVDGEA 87 (117)
Q Consensus 52 ~LaqLQvGgs-g~RLaQc~~VrItt~k-~LPmQVDGEP 87 (117)
||+++|+|++ ++|||||++|+|++++ ++||||||||
T Consensus 124 hl~~~~~g~~~~~rl~Q~~~i~i~~~~~~~~~QvDGEp 161 (161)
T PF00609_consen 124 HLGQIQAGLSSAKRLAQGRPIRIETKENKVPFQVDGEP 161 (161)
T ss_pred hhhhhhhccCCceEeecCCEEEEEECCCceeEEeCCCC
Confidence 7999999975 6899999999999999 9999999998
No 5
>TIGR00147 lipid kinase, YegS/Rv2252/BmrU family. The E. coli member of this family, YegS has been purified and shown to have phosphatidylglycerol kinase activity. The member from M. tuberculosis, Rv2252, has diacylglycerol kinase activity. BmrU from B. subtilis is in an operon with multidrug efflux transporter Bmr, but is uncharacterized.
Probab=97.01 E-value=0.0011 Score=52.10 Aligned_cols=37 Identities=24% Similarity=0.258 Sum_probs=32.9
Q ss_pred ccceecceEEEEeecCcceeecCccceecCcEEEEee
Q psy12045 63 IAICQCKSAKIVTTKTIPMQVDGEACRVNPSIILLNH 99 (117)
Q Consensus 63 ~RLaQc~~VrItt~k~LPmQVDGEPW~Q~Ps~I~Is~ 99 (117)
++..||++|+|++.+++|+|+|||++...|..|+|..
T Consensus 250 v~~~~~~~~~i~~~~~~~~~iDGE~~~~~p~~i~v~p 286 (293)
T TIGR00147 250 IIYGKASRIDIQTPHKITFNLDGEPLGGTPFHIEILP 286 (293)
T ss_pred EEEEEccEEEEEcCCCcEEEeCCCcCCCCcEEEEEEh
Confidence 5778999999999999999999999998887777754
No 6
>PRK13057 putative lipid kinase; Reviewed
Probab=96.91 E-value=0.0016 Score=51.60 Aligned_cols=45 Identities=22% Similarity=0.369 Sum_probs=35.9
Q ss_pred HHHhhcCc----cccceecceEEEEeecCcceeecCccceecCcEEEEe
Q psy12045 54 EELQAGGH----GIAICQCKSAKIVTTKTIPMQVDGEACRVNPSIILLN 98 (117)
Q Consensus 54 aqLQvGgs----g~RLaQc~~VrItt~k~LPmQVDGEPW~Q~Ps~I~Is 98 (117)
..+..|.+ .++.-||++++|++.+++|+|+|||.+...|.+|.|.
T Consensus 227 ~~~~~g~~~~~~~v~~~~~~~~~i~~~~~~~~~~DGE~~~~~p~~i~v~ 275 (287)
T PRK13057 227 PALRRGRHGEWPDVRAFRTTELELRTRKPRPINTDGELTTYTPAHFRVL 275 (287)
T ss_pred HHHhcCCccCCCcEEEEEeeEEEEEeCCCcEEeeCCccCCCCCEEEEEE
Confidence 33445543 3788899999999999999999999998888666664
No 7
>smart00045 DAGKa Diacylglycerol kinase accessory domain (presumed). Diacylglycerol (DAG) is a second messenger that acts as a protein kinase C activator. DAG can be produced from the hydrolysis of phosphatidylinositol 4,5-bisphosphate (PIP2) by a phosphoinositide-specific phospholipase C and by the degradation of phosphatidylcholine (PC) by a phospholipase C or the concerted actions of phospholipase D and phosphatidate phosphohydrolase. This domain might either be an accessory domain or else contribute to the catalytic domain. Bacterial homologues are known.
Probab=96.84 E-value=0.00073 Score=49.68 Aligned_cols=31 Identities=58% Similarity=0.847 Sum_probs=26.3
Q ss_pred hhcCccccceecceEE--EEeecCcceeecCcc
Q psy12045 57 QAGGHGIAICQCKSAK--IVTTKTIPMQVDGEA 87 (117)
Q Consensus 57 QvGgsg~RLaQc~~Vr--Itt~k~LPmQVDGEP 87 (117)
.++.+++++.||+.|+ |.+..++|+|+||||
T Consensus 128 ~~~~~~v~~~~~~~v~i~i~~~~~~~~q~DGE~ 160 (160)
T smart00045 128 QVGLAGRRIAQCSEVRITIKTSKTIPMQVDGEP 160 (160)
T ss_pred hccCCCceeecCceEEEEEecCCceeeecCCCC
Confidence 3455678999999999 777889999999996
No 8
>PRK12361 hypothetical protein; Provisional
Probab=95.74 E-value=0.0099 Score=51.48 Aligned_cols=45 Identities=18% Similarity=0.220 Sum_probs=35.3
Q ss_pred cccceecceEEEEeecCcceeecCccceecCcEEEEeecCcccccc
Q psy12045 62 GIAICQCKSAKIVTTKTIPMQVDGEACRVNPSIILLNHLNKAPMLA 107 (117)
Q Consensus 62 g~RLaQc~~VrItt~k~LPmQVDGEPW~Q~Ps~I~Is~~nQa~ML~ 107 (117)
.++..+|+.|+|++.+++|+|+|||++...|.+|.|.. +..++++
T Consensus 496 ~v~~~~~k~v~I~~~~~~~~~iDGE~~~~~p~~i~v~p-~al~vlv 540 (547)
T PRK12361 496 KVHHAHAKKVTISSQKPIKYVIDGELFEDEDLTIEVQP-ASLKVFV 540 (547)
T ss_pred ceEEEEeeEEEEEeCCceEEEECCccCCceEEEEEEec-CceEEEe
Confidence 36777999999999999999999999988787777653 3334443
No 9
>PRK13337 putative lipid kinase; Reviewed
Probab=95.48 E-value=0.024 Score=45.32 Aligned_cols=45 Identities=16% Similarity=0.197 Sum_probs=33.9
Q ss_pred HHHHhhcCc----cccceecceEEEEeecCcceeecCccceecCcEEEE
Q psy12045 53 EEELQAGGH----GIAICQCKSAKIVTTKTIPMQVDGEACRVNPSIILL 97 (117)
Q Consensus 53 LaqLQvGgs----g~RLaQc~~VrItt~k~LPmQVDGEPW~Q~Ps~I~I 97 (117)
+..+..|.| .+...+|+.|+|+..+++|+|+|||+....|-.|++
T Consensus 235 ~~~~~~g~~~~~~~v~~~~~~~~~i~~~~~~~~~iDGE~~~~~p~~i~v 283 (304)
T PRK13337 235 ATLALRGEHIKHPKVIYTKANRIKVSSFDKMQLNLDGEYGGKLPAEFEN 283 (304)
T ss_pred HHHHHcCCcCCCCcEEEEEccEEEEEcCCCCeEEeCCCcCCCCCEEEEE
Confidence 344455543 256678999999999999999999998876755554
No 10
>TIGR03702 lip_kinase_YegS lipid kinase YegS. Members of this protein family are designated YegS, an apparent lipid kinase family in the Proteobacteria. Bakali, et al. report phosphatidylglycerol kinase activity for the member from Escherichia coli, but refrain from calling that activity synonymous with its biological role. Note that a broader, subfamily-type model (TIGR00147), includes this family but also multiple paralogs in some species and varied functions.
Probab=95.28 E-value=0.033 Score=44.32 Aligned_cols=35 Identities=14% Similarity=0.096 Sum_probs=27.8
Q ss_pred cceecceEEEEeecCcceeecCccceecCcEEEEe
Q psy12045 64 AICQCKSAKIVTTKTIPMQVDGEACRVNPSIILLN 98 (117)
Q Consensus 64 RLaQc~~VrItt~k~LPmQVDGEPW~Q~Ps~I~Is 98 (117)
.-.+++.++|++.+++|+|+|||+.-..|..|++.
T Consensus 244 ~~~~~~~i~i~~~~~~~~~vDGE~~~~~p~~i~v~ 278 (293)
T TIGR03702 244 VRARLPWLEIEAPQPLTFNLDGEPLSGRHFRIEVL 278 (293)
T ss_pred EEEEcCEEEEEeCCCcEEEECCCcCCCceEEEEEE
Confidence 34567889999999999999999987667555553
No 11
>PRK13054 lipid kinase; Reviewed
Probab=95.20 E-value=0.025 Score=45.17 Aligned_cols=44 Identities=14% Similarity=0.024 Sum_probs=33.1
Q ss_pred ccceecceEEEEeecCcceeecCccceecCcEEEEeecCcccccc
Q psy12045 63 IAICQCKSAKIVTTKTIPMQVDGEACRVNPSIILLNHLNKAPMLA 107 (117)
Q Consensus 63 ~RLaQc~~VrItt~k~LPmQVDGEPW~Q~Ps~I~Is~~nQa~ML~ 107 (117)
+..-+++.|+|++.+++|+|+|||++-..|-+|+|. ++-.++++
T Consensus 249 v~~~~~~~v~i~~~~~~~~~iDGE~~~~~p~~i~v~-p~al~vl~ 292 (300)
T PRK13054 249 IIRARLPWLEIQAPHELTFNLDGEPLSGRHFRIEVL-PAALRCRL 292 (300)
T ss_pred EEEEECCEEEEEcCCCCEEEeCCCcCCCccEEEEEE-cCeeEEEe
Confidence 456689999999988999999999998767555553 44444444
No 12
>PRK00861 putative lipid kinase; Reviewed
Probab=94.66 E-value=0.041 Score=43.72 Aligned_cols=35 Identities=29% Similarity=0.335 Sum_probs=28.9
Q ss_pred ccceecceEEEEeecCcceeecCccceecCcEEEE
Q psy12045 63 IAICQCKSAKIVTTKTIPMQVDGEACRVNPSIILL 97 (117)
Q Consensus 63 ~RLaQc~~VrItt~k~LPmQVDGEPW~Q~Ps~I~I 97 (117)
+...+|+.|+|++.+++|+|+|||+....|-+|.|
T Consensus 252 v~~~~~~~i~I~~~~~~~~~~DGE~~~~~p~~i~v 286 (300)
T PRK00861 252 IGYLRAKQVKITTDPPQKVVIDGEVVGTTPIEIEC 286 (300)
T ss_pred eEEEEccEEEEEeCCCeEEEECCccCCCceEEEEE
Confidence 56678999999999999999999998766655554
No 13
>PRK13059 putative lipid kinase; Reviewed
Probab=94.65 E-value=0.061 Score=43.07 Aligned_cols=36 Identities=19% Similarity=0.168 Sum_probs=29.7
Q ss_pred ccceecceEEEEeecCcceeecCccceecCcEEEEe
Q psy12045 63 IAICQCKSAKIVTTKTIPMQVDGEACRVNPSIILLN 98 (117)
Q Consensus 63 ~RLaQc~~VrItt~k~LPmQVDGEPW~Q~Ps~I~Is 98 (117)
+..-+|++|+|++.+++|+|+|||+.-..|.+|.+.
T Consensus 248 v~~~~~~~i~i~~~~~~~~~~DGE~~~~~p~~i~v~ 283 (295)
T PRK13059 248 LIYFKTDKLEIESNEEIVTDIDGERGPDFPLNIECI 283 (295)
T ss_pred EEEEEeeEEEEEeCCCceEEeCCCcCCCCcEEEEEe
Confidence 555689999999999999999999977777666664
No 14
>PRK13055 putative lipid kinase; Reviewed
Probab=93.81 E-value=0.14 Score=41.95 Aligned_cols=54 Identities=15% Similarity=0.123 Sum_probs=36.9
Q ss_pred HHHHhh-cCc----cccceecceEEEEeec--CcceeecCccceecCcEEEEeecCcccccc
Q psy12045 53 EEELQA-GGH----GIAICQCKSAKIVTTK--TIPMQVDGEACRVNPSIILLNHLNKAPMLA 107 (117)
Q Consensus 53 LaqLQv-Ggs----g~RLaQc~~VrItt~k--~LPmQVDGEPW~Q~Ps~I~Is~~nQa~ML~ 107 (117)
+..+.. |.| .++.-+|+.|+|++.. ++|+|+|||+....|.+|++. ++..++++
T Consensus 239 ~~~~~~~G~~~~~~~v~~~~~~~i~I~~~~~~~~~~~iDGE~~~~~pv~i~v~-p~al~v~~ 299 (334)
T PRK13055 239 MALILNGGKHIDDPRVIYIKTSKLTIEPLGDDRLMVNLDGEYGGDAPMTFENL-KQHIEFFA 299 (334)
T ss_pred HHHHHhCCCCCCCCcEEEEEccEEEEEeCCCCcceEeeCCCcCCCCcEEEEEE-cCeEEEEe
Confidence 344555 533 3566789999998753 599999999987777666664 34444544
No 15
>PF10446 DUF2457: Protein of unknown function (DUF2457); InterPro: IPR018853 This entry represents a family of uncharacterised proteins.
Probab=92.86 E-value=0.022 Score=50.50 Aligned_cols=10 Identities=30% Similarity=0.042 Sum_probs=3.9
Q ss_pred ceecCcEEEE
Q psy12045 88 CRVNPSIILL 97 (117)
Q Consensus 88 W~Q~Ps~I~I 97 (117)
|.++-|-|..
T Consensus 148 ~~~S~sS~~S 157 (458)
T PF10446_consen 148 RRSSDSSIES 157 (458)
T ss_pred cCCCCCcccc
Confidence 3333344443
No 16
>PRK11914 diacylglycerol kinase; Reviewed
Probab=91.63 E-value=0.27 Score=39.24 Aligned_cols=35 Identities=17% Similarity=0.208 Sum_probs=26.9
Q ss_pred ccceecceEEEEeecCcceeecCccceecCcEEEEe
Q psy12045 63 IAICQCKSAKIVTTKTIPMQVDGEACRVNPSIILLN 98 (117)
Q Consensus 63 ~RLaQc~~VrItt~k~LPmQVDGEPW~Q~Ps~I~Is 98 (117)
+..-+|+.|+|.+. .+|+++|||+....|.+|.+.
T Consensus 260 v~~~~~~~i~i~~~-~~~~~~DGE~~~~~p~~i~v~ 294 (306)
T PRK11914 260 VSTARAKTVHVECP-GINAYADGDFACPLPAEISAV 294 (306)
T ss_pred EEEEEeEEEEEEcC-CcceecCCCcCCCCceEEEEE
Confidence 45668999999886 489999999976666555553
No 17
>PF09026 CENP-B_dimeris: Centromere protein B dimerisation domain; InterPro: IPR015115 Centromere protein B (CENP-B) interacts with centromeric heterochromatin in chromosomes and binds to a specific subset of alphoid satellite DNA, called the CENP-B box. CENP-B may organise arrays of centromere satellite DNA into a higher order structure, which then directs centromere formation and kinetochore assembly in mammalian chromosomes. The CENP-B dimerisation domain is composed of two alpha-helices, which are folded into an antiparallel configuration. Dimerisation of CENP-B is mediated by this domain, in which monomers dimerise to form a symmetrical, antiparallel, four-helix bundle structure with a large hydrophobic patch in which 23 residues of one monomer form van der Waals contacts with the other monomer. This CENP-B dimer configuration may be suitable for capturing two distant CENP-B boxes during centromeric heterochromatin formation []. ; GO: 0003677 DNA binding, 0003682 chromatin binding, 0006355 regulation of transcription, DNA-dependent, 0000775 chromosome, centromeric region, 0005634 nucleus; PDB: 1UFI_A.
Probab=91.10 E-value=0.064 Score=39.28 Aligned_cols=7 Identities=29% Similarity=-0.230 Sum_probs=2.6
Q ss_pred HHHHhhc
Q psy12045 53 EEELQAG 59 (117)
Q Consensus 53 LaqLQvG 59 (117)
+|-...+
T Consensus 46 fgea~~~ 52 (101)
T PF09026_consen 46 FGEAMAY 52 (101)
T ss_dssp HHHHHHH
T ss_pred HHHHHhh
Confidence 3333333
No 18
>COG1597 LCB5 Sphingosine kinase and enzymes related to eukaryotic diacylglycerol kinase [Lipid metabolism / General function prediction only]
Probab=88.43 E-value=0.66 Score=37.96 Aligned_cols=44 Identities=23% Similarity=0.329 Sum_probs=34.0
Q ss_pred ccceecceEEEEeecCcceeecCccceecCcEEEEeecCcccccc
Q psy12045 63 IAICQCKSAKIVTTKTIPMQVDGEACRVNPSIILLNHLNKAPMLA 107 (117)
Q Consensus 63 ~RLaQc~~VrItt~k~LPmQVDGEPW~Q~Ps~I~Is~~nQa~ML~ 107 (117)
+-..+|+.+.|++...+++++|||+....|.+|++. +.-.++|.
T Consensus 251 v~~~~~~~~~i~~~~~~~~~~DGE~~~~~p~~i~~~-p~al~vl~ 294 (301)
T COG1597 251 VEYLRAKKLEITSDPPIPVNLDGEYLGKTPVTIEVL-PGALRVLV 294 (301)
T ss_pred eEEEeccEEEEEcCCCceEeeCCccCCCCcEEEEEe-cccEEEEc
Confidence 566889999999999999999999999999555553 33344443
No 19
>PLN02958 diacylglycerol kinase/D-erythro-sphingosine kinase
Probab=78.18 E-value=2.9 Score=36.56 Aligned_cols=53 Identities=21% Similarity=0.132 Sum_probs=35.4
Q ss_pred HHHHhhcCc----cccceecceEEEEee-------cCcceeecCccceecCcEEEEeecCcccccc
Q psy12045 53 EEELQAGGH----GIAICQCKSAKIVTT-------KTIPMQVDGEACRVNPSIILLNHLNKAPMLA 107 (117)
Q Consensus 53 LaqLQvGgs----g~RLaQc~~VrItt~-------k~LPmQVDGEPW~Q~Ps~I~Is~~nQa~ML~ 107 (117)
|..+..|.| .+..-+|+.++|+.. +..++++|||+.-..|.+|.+. .++.|+.
T Consensus 400 l~~~~~G~h~~~~~V~~~k~k~~~I~~~~~~~~~~~~~~i~iDGE~~~~~p~~i~v~--~~al~~~ 463 (481)
T PLN02958 400 MTKLSDGTHVKSPYVMYLKVKAFVLEPGPRTDDPTKGGIIDSDGEVLARGNGSYKCD--QKALMSY 463 (481)
T ss_pred HHHHhCCCccCCCceEEEEEEEEEEEECCcccCcCcCCeEEECCcccCCCCceeeec--ccccccc
Confidence 444555543 256678999999873 4578999999987778666654 3444443
No 20
>PRK14075 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=75.19 E-value=5.3 Score=32.11 Aligned_cols=44 Identities=18% Similarity=0.222 Sum_probs=31.4
Q ss_pred ccceecceEEEEeecCcceeecCccceecCcEEEEeecC-cccccc
Q psy12045 63 IAICQCKSAKIVTTKTIPMQVDGEACRVNPSIILLNHLN-KAPMLA 107 (117)
Q Consensus 63 ~RLaQc~~VrItt~k~LPmQVDGEPW~Q~Ps~I~Is~~n-Qa~ML~ 107 (117)
+=+.+++.|+|.+.+.+++++||+.. .+...|+|+... .+.+++
T Consensus 191 iVlp~~~~I~I~~~~~~~l~iDGe~~-~~~~~I~I~~s~~~l~li~ 235 (256)
T PRK14075 191 IVIPSNEKVTVESQRDINLIVDGVLV-GKTNRITVKKSRRYVRILR 235 (256)
T ss_pred eEcCCCCEEEEEECCceEEEECCCCc-CCCcEEEEEECCCEEEEEE
Confidence 34668999999988889999999973 222367777644 455554
No 21
>PLN02204 diacylglycerol kinase
Probab=63.44 E-value=8.9 Score=35.34 Aligned_cols=43 Identities=7% Similarity=0.048 Sum_probs=29.9
Q ss_pred ccceecceEEEEee-cCcceeecCccceecCcEEEEeecCccccc
Q psy12045 63 IAICQCKSAKIVTT-KTIPMQVDGEACRVNPSIILLNHLNKAPML 106 (117)
Q Consensus 63 ~RLaQc~~VrItt~-k~LPmQVDGEPW~Q~Ps~I~Is~~nQa~ML 106 (117)
+..-+++.++|+.. ...++++|||+....|..|+|. ++-..++
T Consensus 552 Ve~~ktk~f~~~s~~~~~~~niDGE~~~~~~v~v~V~-~~al~lf 595 (601)
T PLN02204 552 VEHHKTPAFTFTSFGDESVWNLDGEIFQAHQLSAQVF-RGLVNLF 595 (601)
T ss_pred EEEEEeeEEEEEECCCCceEEeCCCcCCCccEEEEEE-cCeeEEE
Confidence 46678999999875 5688999999876666666653 3334443
No 22
>PF08207 EFP_N: Elongation factor P (EF-P) KOW-like domain; InterPro: IPR013185 This entry represents the N-terminal domain of homologues of elongation factor P, which probably are translation initiation factors. ; PDB: 3TRE_A 1YBY_A 1IZ6_B 1UEB_B 3HUW_V 3HUY_V 3A5Z_H 3OYY_B.
Probab=61.15 E-value=8.3 Score=24.56 Aligned_cols=15 Identities=27% Similarity=0.474 Sum_probs=11.0
Q ss_pred eecCcceeecCccce
Q psy12045 75 TTKTIPMQVDGEACR 89 (117)
Q Consensus 75 t~k~LPmQVDGEPW~ 89 (117)
+++.+-+++||+||.
T Consensus 5 lr~G~~i~~~g~~~~ 19 (58)
T PF08207_consen 5 LRKGMVIEIDGEPYV 19 (58)
T ss_dssp --TTSEEEETTEEEE
T ss_pred ccCCCEEEECCEEEE
Confidence 456677899999995
No 23
>PF03153 TFIIA: Transcription factor IIA, alpha/beta subunit; InterPro: IPR004855 Transcription factor IIA (TFIIA) is one of several factors that form part of a transcription pre-initiation complex along with RNA polymerase II, the TATA-box-binding protein (TBP) and TBP-associated factors, on the TATA-box sequence upstream of the initiation start site. After initiation, some components of the pre-initiation complex (including TFIIA) remain attached and re-initiate a subsequent round of transcription. TFIIA binds to TBP to stabilise TBP binding to the TATA element. TFIIA also inhibits the cytokine HMGB1 (high mobility group 1 protein) binding to TBP [], and can dissociate HMGB1 already bound to TBP/TATA-box. Human and Drosophila TFIIA have three subunits: two large subunits, LN/alpha and LC/beta, derived from the same gene, and a small subunit, S/gamma. Yeast TFIIA has two subunits: a large TOA1 subunit that shows sequence similarity to the N-terminal of LN/alpha and the C-terminal of LC/beta, and a small subunit, TOA2 that is highly homologous with S/gamma. The conserved regions of the large and small subunits of TFIIA combine to form two domains: a four-helix bundle (helical domain) composed of two helices from each of the N-terminal regions of TOA1 and TOA2 in yeast; and a beta-barrel (beta-barrel domain) composed of beta-sheets from the C-terminal regions of TOA1 and TOA2 []. This entry represents the precursor that yields both the alpha and beta subunits of TFIIA. The TFIIA heterotrimer is an essential general transcription initiation factor for the expression of genes transcribed by RNA polymerase II []. ; GO: 0006367 transcription initiation from RNA polymerase II promoter, 0005672 transcription factor TFIIA complex; PDB: 1NVP_B 1YTF_B 1RM1_C 1NH2_B.
Probab=52.23 E-value=11 Score=31.29 Aligned_cols=11 Identities=18% Similarity=0.634 Sum_probs=7.7
Q ss_pred cccceecceEE
Q psy12045 62 GIAICQCKSAK 72 (117)
Q Consensus 62 g~RLaQc~~Vr 72 (117)
.+=|||.-.|.
T Consensus 332 ~~~~c~~~kv~ 342 (375)
T PF03153_consen 332 NVVLCQYDKVT 342 (375)
T ss_dssp -EEEEEEEEEE
T ss_pred CEEEEEeeccc
Confidence 46788887776
No 24
>PF06581 p31comet: Mad1 and Cdc20-bound-Mad2 binding; InterPro: IPR009511 This entry represents Mad1 and Cdc20-bound-Mad2 binding proteins that are involved in the cell-cycle surveillance mechanism called the spindle checkpoint []. This mechanism monitors the proper bipolar attachment of sister chromatids to spindle microtubules and ensures the fidelity of chromosome segregation during mitosis. A key player in mitosis is Mad2, which exhibits an unusual two-state behaviour. A Mad1-Mad2 core complex recruits cytosolic Mad2 to kinetochores through Mad2 dimerisation and converts Mad2 to a conformer amenable to Cdc20 binding. p31comet inactivates the checkpoint by binding to Mad1- or Cdc20-bound Mad2 in such a way as to stop Mad2 activation and to promote the dissociation of the Mad2-Cdc20 complex [].; GO: 0007096 regulation of exit from mitosis, 0005634 nucleus; PDB: 2QYF_B.
Probab=50.36 E-value=13 Score=31.26 Aligned_cols=31 Identities=19% Similarity=0.105 Sum_probs=16.2
Q ss_pred ecceEEEEeec---Ccc-eeecCccceecCcEEEE
Q psy12045 67 QCKSAKIVTTK---TIP-MQVDGEACRVNPSIILL 97 (117)
Q Consensus 67 Qc~~VrItt~k---~LP-mQVDGEPW~Q~Ps~I~I 97 (117)
|++..+|++.. .+| +--+..-|+|+|.+|.-
T Consensus 227 rg~~~~I~ls~~~~~~~~~~~edyIWfQaPvtiKG 261 (264)
T PF06581_consen 227 RGKKLTITLSCGRPSIPATAWEDYIWFQAPVTIKG 261 (264)
T ss_dssp S-EEEEEEEE-S-----TTTTTTEEEEE-SS-EE-
T ss_pred CCceEEEEEecCCCCCCCCcchheEEEecCccccc
Confidence 45666666643 244 33478899999988863
No 25
>PF02311 AraC_binding: AraC-like ligand binding domain; InterPro: IPR003313 This entry defines the arabinose-binding and dimerisation domain of the bacterial gene regulatory protein AraC. The crystal structure of the arabinose-binding and dimerization domain of the Escherichia coli gene regulatory protein AraC was determined in the presence and absence of L-arabinose. The arabinose-bound molecule shows that the protein adopts an unusual fold, binding sugar within a beta barrel and completely burying the arabinose with the amino-terminal arm of the protein. Dimer contacts in the presence of arabinose are mediated by an antiparallel coiled-coil. In the uncomplexed protein, the amino-terminal arm is disordered, uncovering the sugar-binding pocket and allowing it to serve as an oligomerization interface [].; GO: 0006355 regulation of transcription, DNA-dependent; PDB: 1XJA_B 2ARA_A 2AAC_B 2ARC_A.
Probab=42.61 E-value=47 Score=21.50 Aligned_cols=41 Identities=12% Similarity=0.138 Sum_probs=27.1
Q ss_pred cceEEEEeecCcceeecCccceecCcEEEEeecCccccccc
Q psy12045 68 CKSAKIVTTKTIPMQVDGEACRVNPSIILLNHLNKAPMLAK 108 (117)
Q Consensus 68 c~~VrItt~k~LPmQVDGEPW~Q~Ps~I~Is~~nQa~ML~k 108 (117)
.-.+-+.+....-+.++|..+...|+.+.+..+++..-...
T Consensus 23 ~~~i~~v~~G~~~~~~~~~~~~l~~g~~~li~p~~~H~~~~ 63 (136)
T PF02311_consen 23 FYEIIYVLSGEGTLHIDGQEYPLKPGDLFLIPPGQPHSYYP 63 (136)
T ss_dssp SEEEEEEEEE-EEEEETTEEEEE-TT-EEEE-TTS-EEEEE
T ss_pred CEEEEEEeCCEEEEEECCEEEEEECCEEEEecCCccEEEec
Confidence 44555666777778999999999999999888877544433
No 26
>PLN03078 Putative tRNA pseudouridine synthase; Provisional
Probab=41.96 E-value=20 Score=32.63 Aligned_cols=38 Identities=18% Similarity=0.052 Sum_probs=25.3
Q ss_pred cceecceEEEEe-ecCcceeecCccceecCcEEEEeecCcccccc
Q psy12045 64 AICQCKSAKIVT-TKTIPMQVDGEACRVNPSIILLNHLNKAPMLA 107 (117)
Q Consensus 64 RLaQc~~VrItt-~k~LPmQVDGEPW~Q~Ps~I~Is~~nQa~ML~ 107 (117)
||++.+..+|.. ....|+-..|.+| |+|+..+|..||-
T Consensus 331 ~i~~s~~R~I~~~~~~~~~~~~g~~f------v~i~I~GqSFmlh 369 (513)
T PLN03078 331 RISASHFRKIFRCSCGKLEKSLGFDF------VELSIWGESFMLH 369 (513)
T ss_pred ccchhheEEEEEeecCCccccCCceE------EEEEEEehhHHHH
Confidence 888876555543 3445666678866 4666688888874
No 27
>PF07883 Cupin_2: Cupin domain; InterPro: IPR013096 This family represents the conserved barrel domain of the cupin superfamily [] (cupa is the Latin term for a small barrel). ; PDB: 2OPK_C 3BU7_B 2PHD_D 3NVC_A 3NKT_A 3NJZ_A 3NW4_A 3NST_A 3NL1_A 2H0V_A ....
Probab=37.16 E-value=93 Score=18.59 Aligned_cols=39 Identities=15% Similarity=0.124 Sum_probs=29.4
Q ss_pred eEEEEeecCcceeecCccceecCcEEEEeecCccccccc
Q psy12045 70 SAKIVTTKTIPMQVDGEACRVNPSIILLNHLNKAPMLAK 108 (117)
Q Consensus 70 ~VrItt~k~LPmQVDGEPW~Q~Ps~I~Is~~nQa~ML~k 108 (117)
.+-+-+.-.+-+++||+++...|+.+.+..+++..-++.
T Consensus 21 e~~~vl~G~~~~~~~~~~~~l~~Gd~~~i~~~~~H~~~n 59 (71)
T PF07883_consen 21 EFFYVLSGEGTLTVDGERVELKPGDAIYIPPGVPHQVRN 59 (71)
T ss_dssp EEEEEEESEEEEEETTEEEEEETTEEEEEETTSEEEEEE
T ss_pred EEEEEEECCEEEEEccEEeEccCCEEEEECCCCeEEEEE
Confidence 455666777889999999999999877766776554443
No 28
>PF07351 DUF1480: Protein of unknown function (DUF1480); InterPro: IPR009950 This family consists of several hypothetical Enterobacterial proteins of around 80 residues in length. The function of this family is unknown.
Probab=35.70 E-value=47 Score=23.54 Aligned_cols=40 Identities=23% Similarity=0.205 Sum_probs=21.6
Q ss_pred cceEEEEee--cCcceeecCccceecCcEEEEeecCccccccccc
Q psy12045 68 CKSAKIVTT--KTIPMQVDGEACRVNPSIILLNHLNKAPMLAKRK 110 (117)
Q Consensus 68 c~~VrItt~--k~LPmQVDGEPW~Q~Ps~I~Is~~nQa~ML~k~K 110 (117)
.++|.|..+ ..|.||.|| |--.-|+=. .+.++..+|.|.+
T Consensus 26 ~~tlsIPCksdpdlcmQLDg--WDe~TSiPA-~ldgk~~lLyr~h 67 (80)
T PF07351_consen 26 EDTLSIPCKSDPDLCMQLDG--WDEHTSIPA-ILDGKPSLLYRQH 67 (80)
T ss_pred CCeEEeecCCChhheeEecc--cccCCccce-EECCceeeeeehh
Confidence 566777654 448899988 332222111 1355555555543
No 29
>KOG0699|consensus
Probab=34.04 E-value=20 Score=32.46 Aligned_cols=11 Identities=27% Similarity=0.196 Sum_probs=5.9
Q ss_pred HHHhHHHHhhc
Q psy12045 49 EEEEEEELQAG 59 (117)
Q Consensus 49 eee~LaqLQvG 59 (117)
.+.+|+-+-.|
T Consensus 309 ~e~~map~~~~ 319 (542)
T KOG0699|consen 309 VEGSMAPLLLG 319 (542)
T ss_pred hhhcccccccc
Confidence 34566665444
No 30
>PRK12426 elongation factor P; Provisional
Probab=31.17 E-value=33 Score=27.10 Aligned_cols=15 Identities=0% Similarity=-0.006 Sum_probs=12.2
Q ss_pred eecCcceeecCccce
Q psy12045 75 TTKTIPMQVDGEACR 89 (117)
Q Consensus 75 t~k~LPmQVDGEPW~ 89 (117)
+++.+-+++||.||.
T Consensus 7 ik~G~~i~~~g~~~~ 21 (185)
T PRK12426 7 LSVGMFISTKDGLYK 21 (185)
T ss_pred cCCCCEEEECCEEEE
Confidence 456788999999995
No 31
>PF02088 Ornatin: Ornatin; InterPro: IPR002463 Ornatin is a potent glycoprotein IIb-IIIa (GP IIb-IIIa) antagonist and platelet aggregation inhibitor []. The protein is 41-52 residues in length and contains the RGD recognition motif common in adhesion proteins, and 6 conserved cysteine residues. The sequences of ornatin isoforms B, C, D and E are highly similar, while isoforms A2 and A3 are less similar, lacking the N-terminal 9 residues. Ornatins share ~40% identity with decorsin, a GP IIb-IIIa antagonist isolated from the leech (Macrobdella decora) [].; GO: 0007155 cell adhesion, 0030193 regulation of blood coagulation, 0005576 extracellular region
Probab=28.93 E-value=19 Score=22.54 Aligned_cols=31 Identities=23% Similarity=0.298 Sum_probs=21.0
Q ss_pred eecceEEEEeecCcceeecCccceecCcEEE
Q psy12045 66 CQCKSAKIVTTKTIPMQVDGEACRVNPSIIL 96 (117)
Q Consensus 66 aQc~~VrItt~k~LPmQVDGEPW~Q~Ps~I~ 96 (117)
-||+.|+-+.--.-...++|-||....|.|-
T Consensus 2 ~~c~d~ke~gqp~~kcrc~gkpctvgkc~~a 32 (41)
T PF02088_consen 2 PQCGDFKESGQPNDKCRCNGKPCTVGKCNIA 32 (41)
T ss_pred ccchhhHhcCCCCcccccCCeeeceeeeeec
Confidence 4666666544444458899999887777653
No 32
>PF14310 Fn3-like: Fibronectin type III-like domain; PDB: 3ABZ_D 3AC0_D 2X40_A 2X41_A 2X42_A.
Probab=26.60 E-value=91 Score=19.88 Aligned_cols=35 Identities=11% Similarity=0.018 Sum_probs=20.9
Q ss_pred eecceEEEEeecCcceee--cCccceecCcEEEEeec
Q psy12045 66 CQCKSAKIVTTKTIPMQV--DGEACRVNPSIILLNHL 100 (117)
Q Consensus 66 aQc~~VrItt~k~LPmQV--DGEPW~Q~Ps~I~Is~~ 100 (117)
|+.++|+|++...-=..+ ++.-|...|+.+.|...
T Consensus 32 Ges~~v~~~l~~~~l~~~d~~~~~~~~~~G~~~l~vG 68 (71)
T PF14310_consen 32 GESKTVSFTLPPEDLAYWDEDAGKWVIEPGTYTLSVG 68 (71)
T ss_dssp T-EEEEEEEEEHHHHEEEETTTTCEEE-SEEEEEEEE
T ss_pred CCEEEEEEEECHHHEeeEcCCCCEEEEeCCeEEEEEE
Confidence 456666666654322333 44579999999988754
No 33
>PRK15301 hypothetical protein; Provisional
Probab=24.22 E-value=56 Score=26.17 Aligned_cols=27 Identities=11% Similarity=0.238 Sum_probs=21.7
Q ss_pred ccceecceEEEEeecCcceeecCccceecC
Q psy12045 63 IAICQCKSAKIVTTKTIPMQVDGEACRVNP 92 (117)
Q Consensus 63 ~RLaQc~~VrItt~k~LPmQVDGEPW~Q~P 92 (117)
+|.|+-..+.|+++. +++||.|+...+
T Consensus 86 f~fg~~G~~~vklsd---a~lDGkpv~Lg~ 112 (186)
T PRK15301 86 FLFGNNGGLAVKVSQ---MILDGKSYPIGK 112 (186)
T ss_pred EEEcCCCcEEEEEhh---hEECCcEeeeee
Confidence 689998888888876 788888887643
No 34
>PRK03298 hypothetical protein; Provisional
Probab=24.04 E-value=57 Score=26.87 Aligned_cols=20 Identities=5% Similarity=-0.046 Sum_probs=14.2
Q ss_pred cceecCcEEEEeecCccccc
Q psy12045 87 ACRVNPSIILLNHLNKAPML 106 (117)
Q Consensus 87 PW~Q~Ps~I~Is~~nQa~ML 106 (117)
-||-|||++.+....-...+
T Consensus 48 NW~pp~~~~~~~~~~g~~~v 67 (224)
T PRK03298 48 NWMSPPCTLTEEPPGGVEEV 67 (224)
T ss_pred ccCCCCeEEEEEecCCcEEE
Confidence 49999999999775333333
No 35
>COG1917 Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]
Probab=21.30 E-value=1.8e+02 Score=20.10 Aligned_cols=33 Identities=12% Similarity=0.093 Sum_probs=24.0
Q ss_pred eecCcceeecCccceecCcEEEEeecCcccccc
Q psy12045 75 TTKTIPMQVDGEACRVNPSIILLNHLNKAPMLA 107 (117)
Q Consensus 75 t~k~LPmQVDGEPW~Q~Ps~I~Is~~nQa~ML~ 107 (117)
+.-.+-+|++|+++...|+.+.+-.+|...-+.
T Consensus 71 l~G~~~~~~~g~~~~l~~Gd~i~ip~g~~H~~~ 103 (131)
T COG1917 71 LEGEGTVQLEGEKKELKAGDVIIIPPGVVHGLK 103 (131)
T ss_pred EecEEEEEecCCceEecCCCEEEECCCCeeeec
Confidence 345577899999999999887776666554443
No 36
>PF12852 Cupin_6: Cupin
Probab=21.25 E-value=2.4e+02 Score=20.58 Aligned_cols=49 Identities=22% Similarity=0.268 Sum_probs=32.1
Q ss_pred ccccceecceEE--EEeecCcceeecC--ccceecCcEEEEeecCcccccccc
Q psy12045 61 HGIAICQCKSAK--IVTTKTIPMQVDG--EACRVNPSIILLNHLNKAPMLAKR 109 (117)
Q Consensus 61 sg~RLaQc~~Vr--Itt~k~LPmQVDG--EPW~Q~Ps~I~Is~~nQa~ML~k~ 109 (117)
++++..+...+. +.+...+-++++| .|-...++.|.+-.++.+..|...
T Consensus 26 W~~~~~~~~~~~fh~V~~G~~~l~~~~~~~~~~L~~GDivllp~g~~H~l~~~ 78 (186)
T PF12852_consen 26 WGLRFPGSPGASFHVVLRGSCWLRVPGGGEPIRLEAGDIVLLPRGTAHVLSSD 78 (186)
T ss_pred cEEeccCCCceEEEEEECCeEEEEEcCCCCeEEecCCCEEEEcCCCCeEeCCC
Confidence 455555553333 3445566777776 788888888888778877777543
No 37
>PF04050 Upf2: Up-frameshift suppressor 2 ; InterPro: IPR007193 This entry represents Up-frameshift suppressor 2 (also known as Nonsense-mediated mRNA decay protein 2). Transcripts harbouring premature signals for translation termination are recognised and rapidly degraded by eukaryotic cells through a pathway known as nonsense-mediated mRNA decay. In Saccharomyces cerevisiae, three trans-acting factors (Upf1 to Upf3) are required for nonsense-mediated mRNA decay [].; PDB: 2WJV_D.
Probab=20.99 E-value=51 Score=24.94 Aligned_cols=13 Identities=31% Similarity=0.319 Sum_probs=7.9
Q ss_pred HHHHHhHHHHhhc
Q psy12045 47 EEEEEEEEELQAG 59 (117)
Q Consensus 47 ~eeee~LaqLQvG 59 (117)
++=+..|.+|-.-
T Consensus 63 ~dFeref~kmm~e 75 (170)
T PF04050_consen 63 EDFEREFQKMMAE 75 (170)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3445667776665
No 38
>PRK06788 flagellar motor switch protein; Validated
Probab=20.35 E-value=20 Score=26.55 Aligned_cols=28 Identities=0% Similarity=0.007 Sum_probs=22.0
Q ss_pred cceecceEEEE--eecCcceeecCccceec
Q psy12045 64 AICQCKSAKIV--TTKTIPMQVDGEACRVN 91 (117)
Q Consensus 64 RLaQc~~VrIt--t~k~LPmQVDGEPW~Q~ 91 (117)
.|+-+..|.+. +..++-+.|+|-||+.+
T Consensus 54 ~L~vGDVI~Ldk~~~dpv~v~Vng~~~f~G 83 (119)
T PRK06788 54 QLKVGDVLEVEKNLGHKVDVYLSNMKVGIG 83 (119)
T ss_pred CCCCCCEEEeCCcCCCCEEEEECCEEEEEE
Confidence 66778888886 45667788999999865
Done!