Query psy12045
Match_columns 117
No_of_seqs 102 out of 260
Neff 3.6
Searched_HMMs 29240
Date Fri Aug 16 17:13:23 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy12045.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/12045hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3s40_A Diacylglycerol kinase; 97.1 0.00038 1.3E-08 54.2 4.3 38 62-99 253-290 (304)
2 2qv7_A Diacylglycerol kinase D 96.9 0.0015 5E-08 51.4 5.4 45 62-107 271-315 (337)
3 2bon_A Lipid kinase; DAG kinas 96.8 0.001 3.6E-08 52.4 4.1 37 62-98 272-308 (332)
4 1yt5_A Inorganic polyphosphate 70.8 2.4 8.3E-05 32.2 2.5 43 63-107 193-237 (258)
5 2i2c_A Probable inorganic poly 70.0 4.3 0.00015 31.0 3.8 44 65-108 201-247 (272)
6 2an1_A Putative kinase; struct 57.3 8.6 0.00029 29.1 3.3 45 63-107 221-271 (292)
7 1u0t_A Inorganic polyphosphate 56.1 11 0.00038 29.2 3.9 44 64-107 234-283 (307)
8 1yby_A Translation elongation 47.6 8.8 0.0003 29.7 2.0 27 63-89 22-51 (215)
9 1x6o_A Eukaryotic initiation f 42.1 11 0.00038 28.3 1.8 20 76-99 37-56 (174)
10 3cpf_A Eukaryotic translation 41.0 13 0.00046 26.4 2.0 20 76-99 13-32 (138)
11 3er0_A Eukaryotic translation 35.1 16 0.00056 27.2 1.7 20 76-99 37-56 (167)
12 1bkb_A Translation initiation 34.7 22 0.00075 25.1 2.2 20 76-99 15-34 (136)
13 3a5z_B EF-P, elongation factor 32.7 23 0.0008 26.7 2.2 21 75-99 12-32 (191)
14 3ggh_A K88 fimbrial protein AD 32.3 43 0.0015 27.2 3.8 34 64-101 222-255 (275)
15 1ueb_A EF-P, TT0860, elongatio 31.9 23 0.00078 26.5 2.0 21 75-99 7-27 (184)
16 2x48_A CAG38821; archeal virus 30.2 14 0.00047 20.9 0.5 11 81-91 5-15 (55)
17 3hks_A EIF-5A-2, eukaryotic tr 28.5 26 0.00089 26.1 1.9 20 76-99 35-54 (167)
18 2l3u_A YBBR family protein; be 26.7 12 0.00041 24.7 -0.3 35 76-110 4-42 (98)
19 1iz6_A Initiation factor 5A; S 26.4 36 0.0012 24.2 2.2 14 76-89 13-26 (138)
20 3oyy_A EF-P, elongation factor 25.3 37 0.0013 25.5 2.2 21 75-99 10-30 (191)
21 3tre_A EF-P, elongation factor 23.3 43 0.0015 25.1 2.2 21 75-99 12-32 (191)
22 3d82_A Cupin 2, conserved barr 23.1 1.2E+02 0.0043 17.9 4.0 32 73-104 55-86 (102)
23 2a6v_A EMP46P; beta sandwich, 22.5 47 0.0016 25.4 2.4 22 70-91 159-184 (226)
24 2arc_A ARAC, arabinose operon 20.9 1.1E+02 0.0038 19.7 3.7 38 70-107 40-77 (164)
25 2eif_A IF-5A, protein (eukaryo 20.5 50 0.0017 23.3 2.0 20 76-99 17-36 (136)
26 3dsh_A IRF-5, interferon regul 20.1 24 0.00081 27.7 0.2 13 60-72 103-115 (246)
No 1
>3s40_A Diacylglycerol kinase; structural genomics, the center for structural genomics of infectious diseases, csgid, transfer; 2.10A {Bacillus anthracis} PDB: 3t5p_A
Probab=97.14 E-value=0.00038 Score=54.25 Aligned_cols=38 Identities=29% Similarity=0.299 Sum_probs=31.8
Q ss_pred cccceecceEEEEeecCcceeecCccceecCcEEEEee
Q psy12045 62 GIAICQCKSAKIVTTKTIPMQVDGEACRVNPSIILLNH 99 (117)
Q Consensus 62 g~RLaQc~~VrItt~k~LPmQVDGEPW~Q~Ps~I~Is~ 99 (117)
.++..||++|+|++.+++|+|+|||++...|.+|+|..
T Consensus 253 ~v~~~~~~~v~i~~~~~~~~~~DGE~~~~~p~~i~v~p 290 (304)
T 3s40_A 253 DIFHVKAKSIHIETEEEKEVDTDGESSLHTPCQIELLQ 290 (304)
T ss_dssp TEEEEEESEEEEEESSCCEEEEC--CCEESSEEEEEEE
T ss_pred cEEEEEccEEEEEeCCCcEEEeCCCCCCCceEEEEEEC
Confidence 46889999999999999999999999998888877754
No 2
>2qv7_A Diacylglycerol kinase DGKB; alpha-beta domain 1, beta sandwich domain 2, protein-ADP COM transferase; HET: ADP; 2.30A {Staphylococcus aureus} SCOP: e.52.1.2 PDB: 2qvl_A
Probab=96.86 E-value=0.0015 Score=51.40 Aligned_cols=45 Identities=20% Similarity=0.211 Sum_probs=34.4
Q ss_pred cccceecceEEEEeecCcceeecCccceecCcEEEEeecCcccccc
Q psy12045 62 GIAICQCKSAKIVTTKTIPMQVDGEACRVNPSIILLNHLNKAPMLA 107 (117)
Q Consensus 62 g~RLaQc~~VrItt~k~LPmQVDGEPW~Q~Ps~I~Is~~nQa~ML~ 107 (117)
.++..||+.|+|++.+++|+|+|||++...|.+|++. +....+++
T Consensus 271 ~v~~~~~~~i~i~~~~~~~~~iDGE~~~~~~i~i~v~-p~~l~v~~ 315 (337)
T 2qv7_A 271 KVIYEKAKAINISSFTDLQLNVDGEYGGKLPANFLNL-ERHIDVFA 315 (337)
T ss_dssp TEEEEEESEEEEECSSCCEEEETTEEEEESCEEEEEE-EEEEEEEC
T ss_pred CEEEEEeeEEEEEECCCCeEEECCCcCCCCcEEEEEE-cCeEEEEe
Confidence 4688899999999888899999999999877555543 33344443
No 3
>2bon_A Lipid kinase; DAG kinase, transferase; 1.90A {Escherichia coli} SCOP: e.52.1.2 PDB: 2jgr_A 2p1r_A
Probab=96.78 E-value=0.001 Score=52.37 Aligned_cols=37 Identities=19% Similarity=0.108 Sum_probs=31.5
Q ss_pred cccceecceEEEEeecCcceeecCccceecCcEEEEe
Q psy12045 62 GIAICQCKSAKIVTTKTIPMQVDGEACRVNPSIILLN 98 (117)
Q Consensus 62 g~RLaQc~~VrItt~k~LPmQVDGEPW~Q~Ps~I~Is 98 (117)
.+++.||+.|+|++..++|+|+|||++...|.+|++.
T Consensus 272 ~v~~~~~~~i~I~~~~~~~~~iDGE~~~~~~~~i~v~ 308 (332)
T 2bon_A 272 NIIEGASSWFDIQAPHDITFNLDGEPLSGQNFHIEIL 308 (332)
T ss_dssp TEEEEEESEEEEEEEEEEEEEETTEEEEEEEEEEEEE
T ss_pred cEEEEEeeEEEEEECCCCeEEecCCCCCCceEEEEEE
Confidence 4678899999999988899999999999777666654
No 4
>1yt5_A Inorganic polyphosphate/ATP-NAD kinase; domain 1: alpha/beta domain2: beta sandwich, structural genomics, PSI, protein structure initiative; 2.30A {Thermotoga maritima}
Probab=70.81 E-value=2.4 Score=32.18 Aligned_cols=43 Identities=19% Similarity=0.192 Sum_probs=29.5
Q ss_pred ccceecceEEEEeecCcceeecCccce-ecCcEEEEeecC-cccccc
Q psy12045 63 IAICQCKSAKIVTTKTIPMQVDGEACR-VNPSIILLNHLN-KAPMLA 107 (117)
Q Consensus 63 ~RLaQc~~VrItt~k~LPmQVDGEPW~-Q~Ps~I~Is~~n-Qa~ML~ 107 (117)
+-+.+++.|+|++...+++.+||+... ..| |+|+... .+.+++
T Consensus 193 ~v~~~~~~i~i~~~~~~~~~~DG~~~~~~~~--i~i~~~~~~~~li~ 237 (258)
T 1yt5_A 193 VVIPSNFKVVVESQRDINMLVDGVLTGKTKR--IEVKKSRRYVRILR 237 (258)
T ss_dssp EEEETTSCEEEEEEEEEEEEETTEEEEEEEE--EEEEEEEEEEEEEE
T ss_pred EEECCCCEEEEEECCCEEEEECCCcceeeEE--EEEEECCCeEEEEE
Confidence 345678889998878899999999875 334 5665543 344443
No 5
>2i2c_A Probable inorganic polyphosphate/ATP-NAD kinase 1; NADP bound of lmnadk1, transferase; HET: DTA PG4; 1.85A {Listeria monocytogenes egd-e} PDB: 2i1w_A* 2i2a_A* 2i2b_A* 2i29_A* 2i2d_A* 2i2e_A* 3v7u_A* 3v7w_A* 3v7y_A* 3v80_A* 3v8m_A* 3v8n_A* 3v8p_A* 4dy6_A* 2i2f_A* 2q5f_A* 3v8q_A* 3v8r_A*
Probab=69.96 E-value=4.3 Score=31.03 Aligned_cols=44 Identities=14% Similarity=0.047 Sum_probs=28.1
Q ss_pred ceecceEEEEe--ecCcceeecCccceecCc-EEEEeecCccccccc
Q psy12045 65 ICQCKSAKIVT--TKTIPMQVDGEACRVNPS-IILLNHLNKAPMLAK 108 (117)
Q Consensus 65 LaQc~~VrItt--~k~LPmQVDGEPW~Q~Ps-~I~Is~~nQa~ML~k 108 (117)
+..++.|+|.+ ..++++++||+.+...|+ .|+|+...++.-|.+
T Consensus 201 ~~~~~~i~i~~~~~~~~~~~~DG~~~~~~~~~~v~i~~~~~~~~~i~ 247 (272)
T 2i2c_A 201 FPKHHVVSLQPVNDKDFQISVDHLSILHRDVQEIRYEVSAKKIHFAR 247 (272)
T ss_dssp EETTCCEEEEESSCCCEEEEETTEEEEECSEEEEEEEEEEEEEEEEE
T ss_pred eCCCCEEEEEEcCCCCEEEEECCCEeecCCCCEEEEEEcCCEEEEEE
Confidence 44566777764 456889999999654555 477877544433333
No 6
>2an1_A Putative kinase; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG, transferase; 2.00A {Salmonella typhimurium}
Probab=57.29 E-value=8.6 Score=29.10 Aligned_cols=45 Identities=7% Similarity=0.209 Sum_probs=28.3
Q ss_pred ccceecceEEEEee---cCcceeecCcccee-cC-cEEEEeecC-cccccc
Q psy12045 63 IAICQCKSAKIVTT---KTIPMQVDGEACRV-NP-SIILLNHLN-KAPMLA 107 (117)
Q Consensus 63 ~RLaQc~~VrItt~---k~LPmQVDGEPW~Q-~P-s~I~Is~~n-Qa~ML~ 107 (117)
+-+.+++.|+|++. .++++.+||+.... +| ..|+|+... .+++++
T Consensus 221 iv~~~~~~i~i~~~~~~~~~~~~~DG~~~~~~~~~~~v~i~~~~~~~~li~ 271 (292)
T 2an1_A 221 LVINSSSTIRLRFSHRRSDLEISCDSQIALPIQEGEDVLIRRCDYHLNLIH 271 (292)
T ss_dssp EEEETTCCEEEEECC---CEEEEETTSCCEEECTTCEEEEEEEEEEEEEEE
T ss_pred EEECCCCEEEEEEccCCCceEEEECCCeEEecCCCcEEEEEECCCEEEEEE
Confidence 44667888888763 56889999998643 22 246665543 345544
No 7
>1u0t_A Inorganic polyphosphate/ATP-NAD kinase; alpha-beta, beta sandwich, structural genomics, PSI, protein structure initiative; 2.30A {Mycobacterium tuberculosis} SCOP: e.52.1.1 PDB: 1u0r_A 1y3i_A* 1y3h_A
Probab=56.13 E-value=11 Score=29.18 Aligned_cols=44 Identities=7% Similarity=-0.023 Sum_probs=28.4
Q ss_pred cceecceEEEEee---cCcceeecCccc-eecCc-EEEEeecCc-ccccc
Q psy12045 64 AICQCKSAKIVTT---KTIPMQVDGEAC-RVNPS-IILLNHLNK-APMLA 107 (117)
Q Consensus 64 RLaQc~~VrItt~---k~LPmQVDGEPW-~Q~Ps-~I~Is~~nQ-a~ML~ 107 (117)
-+..++.|+|.+. ...++++||+.. ...|+ .|+|+...+ +.+++
T Consensus 234 v~~~~~~i~i~v~~~~~~~~~~~DG~~~~~l~~g~~i~i~~~~~~~~li~ 283 (307)
T 1u0t_A 234 VTSPEATIAIEIEADGHDALVFCDGRREMLIPAGSRLEVTRCVTSVKWAR 283 (307)
T ss_dssp EECTTCCEEEEECTTSCCEEEEETTTEEEEECTTCEEEEEECSSCEEEEE
T ss_pred EECCCCEEEEEEecCCCCEEEEECCCeEEecCCCCEEEEEECCCeeEEEE
Confidence 3556777777653 568899999974 34453 577777554 44443
No 8
>1yby_A Translation elongation factor P; conserved hypothetical protein, structural genomics, PSI, protein structure initiative; 1.95A {Clostridium thermocellum}
Probab=47.60 E-value=8.8 Score=29.69 Aligned_cols=27 Identities=11% Similarity=0.292 Sum_probs=14.6
Q ss_pred ccceecceEEEEe---ecCcceeecCccce
Q psy12045 63 IAICQCKSAKIVT---TKTIPMQVDGEACR 89 (117)
Q Consensus 63 ~RLaQc~~VrItt---~k~LPmQVDGEPW~ 89 (117)
.-|+|-+.+.+++ ++.+-+.+||.||.
T Consensus 22 ~~~~~~rg~Mi~a~dlKkG~~I~idG~p~~ 51 (215)
T 1yby_A 22 TSLYKKAGLMISAGDFKNGVTFELDGQIFQ 51 (215)
T ss_dssp ---------CEEGGGCCTTCEEEETTEEEE
T ss_pred hhhhhhCCEEEEhhhccCCCEEEECCEEEE
Confidence 3478877777764 46788999999995
No 9
>1x6o_A Eukaryotic initiation factor 5A; SGPP, structural genomics, PSI; 1.60A {Leishmania braziliensis} SCOP: b.34.5.2 b.40.4.5 PDB: 1xtd_A
Probab=42.09 E-value=11 Score=28.28 Aligned_cols=20 Identities=25% Similarity=0.444 Sum_probs=15.1
Q ss_pred ecCcceeecCccceecCcEEEEee
Q psy12045 76 TKTIPMQVDGEACRVNPSIILLNH 99 (117)
Q Consensus 76 ~k~LPmQVDGEPW~Q~Ps~I~Is~ 99 (117)
++.+-+.++|.||. +|.++|
T Consensus 37 rkG~~I~idG~p~~----Vve~~~ 56 (174)
T 1x6o_A 37 KKGGYVCINGRPCK----VIDLSV 56 (174)
T ss_dssp CTTCEEEETTEEEE----EEEEEE
T ss_pred cCCCEEEECCEEEE----EEEEEe
Confidence 46788999999994 455555
No 10
>3cpf_A Eukaryotic translation initiation factor 5A-1; structural genomics consortium, leukemia, apoptosis, SGC, HY initiation factor, nucleus; 2.50A {Homo sapiens}
Probab=41.02 E-value=13 Score=26.41 Aligned_cols=20 Identities=20% Similarity=0.448 Sum_probs=15.0
Q ss_pred ecCcceeecCccceecCcEEEEee
Q psy12045 76 TKTIPMQVDGEACRVNPSIILLNH 99 (117)
Q Consensus 76 ~k~LPmQVDGEPW~Q~Ps~I~Is~ 99 (117)
++.+-+.+||.||. ++.++|
T Consensus 13 rkG~~i~~~g~p~~----Vve~~~ 32 (138)
T 3cpf_A 13 RKNGFVVLKGRPCK----IVEMST 32 (138)
T ss_dssp CTTSEEEETTEEEE----EEEEEE
T ss_pred cCCCEEEECCEEEE----EEEEEe
Confidence 46688999999994 555655
No 11
>3er0_A Eukaryotic translation initiation factor 5A-2; yeast, low resolution, acetylation, hypusine, phosphoprotein, protein biosynthesis; 3.35A {Saccharomyces cerevisiae}
Probab=35.12 E-value=16 Score=27.16 Aligned_cols=20 Identities=15% Similarity=0.346 Sum_probs=14.6
Q ss_pred ecCcceeecCccceecCcEEEEee
Q psy12045 76 TKTIPMQVDGEACRVNPSIILLNH 99 (117)
Q Consensus 76 ~k~LPmQVDGEPW~Q~Ps~I~Is~ 99 (117)
++.+-+.+||.||. +|.+++
T Consensus 37 rkG~~I~idG~p~~----Vve~~~ 56 (167)
T 3er0_A 37 RKNGFVVIKSRPCK----IVDMST 56 (167)
T ss_dssp CTTCEEEETTEEEE----EEEEEE
T ss_pred cCCCEEEECCEEEE----EEEEEE
Confidence 46678999999995 455544
No 12
>1bkb_A Translation initiation factor 5A; 1.75A {Pyrobaculum aerophilum} SCOP: b.34.5.2 b.40.4.5
Probab=34.66 E-value=22 Score=25.10 Aligned_cols=20 Identities=25% Similarity=0.627 Sum_probs=14.7
Q ss_pred ecCcceeecCccceecCcEEEEee
Q psy12045 76 TKTIPMQVDGEACRVNPSIILLNH 99 (117)
Q Consensus 76 ~k~LPmQVDGEPW~Q~Ps~I~Is~ 99 (117)
++.+-+.+||.||. ++.++|
T Consensus 15 rkG~~i~~~g~p~~----Vve~~~ 34 (136)
T 1bkb_A 15 KEGSYVVIDGEPCR----VVEIEK 34 (136)
T ss_dssp CTTCEEEETTEEEE----EEEEEE
T ss_pred cCCCEEEECCEEEE----EEEEEE
Confidence 46678899999994 455555
No 13
>3a5z_B EF-P, elongation factor P; aminoacyl-tRNA synthetase paralog, translation, tRNA, lysyl- synthetase, structural genomics, NPPSFA; HET: KAA; 2.50A {Escherichia coli}
Probab=32.67 E-value=23 Score=26.69 Aligned_cols=21 Identities=14% Similarity=0.218 Sum_probs=15.0
Q ss_pred eecCcceeecCccceecCcEEEEee
Q psy12045 75 TTKTIPMQVDGEACRVNPSIILLNH 99 (117)
Q Consensus 75 t~k~LPmQVDGEPW~Q~Ps~I~Is~ 99 (117)
+++.+-+.+||.||. ++.++|
T Consensus 12 lk~G~~I~~dg~p~~----Vve~~~ 32 (191)
T 3a5z_B 12 FRAGLKIMLDGEPYA----VEASEF 32 (191)
T ss_dssp CCTTCEEEETTEEEE----EEEEEE
T ss_pred CCCCCEEEECCEEEE----EEEEEE
Confidence 356788999999994 445544
No 14
>3ggh_A K88 fimbrial protein AD; immunoglobulin like fold, fimbrium, plasmid, cell adhesion; 1.64A {Escherichia coli} PDB: 3gea_A 3hlr_A
Probab=32.31 E-value=43 Score=27.16 Aligned_cols=34 Identities=6% Similarity=0.163 Sum_probs=26.5
Q ss_pred cceecceEEEEeecCcceeecCccceecCcEEEEeecC
Q psy12045 64 AICQCKSAKIVTTKTIPMQVDGEACRVNPSIILLNHLN 101 (117)
Q Consensus 64 RLaQc~~VrItt~k~LPmQVDGEPW~Q~Ps~I~Is~~n 101 (117)
=|+|++.|+|++++++. +--.|. +|-.|.|++..
T Consensus 222 GI~~G~tI~itld~pvt---~~~~Wk-AsLpVtVtY~~ 255 (275)
T 3ggh_A 222 GIANGQTIEATFNQAVT---TSTQWS-APLNVAITYYD 255 (275)
T ss_dssp EECTTCEEEEEESSCCC---SCEEEE-CCEEEEEEETT
T ss_pred cccCCCEEEEEeCCccc---cceeEe-ccceEEEEEcC
Confidence 46899999999998754 667774 67788888853
No 15
>1ueb_A EF-P, TT0860, elongation factor P; beta barrel, riken structural genomics/proteomics initiative, RSGI, structural genomics; 1.65A {Thermus thermophilus} SCOP: b.34.5.2 b.40.4.5 b.40.4.5 PDB: 3huw_V 3huy_V
Probab=31.94 E-value=23 Score=26.51 Aligned_cols=21 Identities=14% Similarity=0.238 Sum_probs=15.0
Q ss_pred eecCcceeecCccceecCcEEEEee
Q psy12045 75 TTKTIPMQVDGEACRVNPSIILLNH 99 (117)
Q Consensus 75 t~k~LPmQVDGEPW~Q~Ps~I~Is~ 99 (117)
+++.+-+.+||.||. ++.++|
T Consensus 7 lkkG~~i~~dg~p~~----Vve~~~ 27 (184)
T 1ueb_A 7 LRPGTKVKMDGGLWE----CVEYQH 27 (184)
T ss_dssp CCTTCEEEETTEEEE----EEEEEE
T ss_pred cCCCCEEEECCEEEE----EEEEEE
Confidence 356788999999994 445544
No 16
>2x48_A CAG38821; archeal virus, viral protein; 2.60A {Sulfolobus islandicus rod-shaped virusorganism_taxid}
Probab=30.17 E-value=14 Score=20.89 Aligned_cols=11 Identities=36% Similarity=0.474 Sum_probs=9.5
Q ss_pred eeecCccceec
Q psy12045 81 MQVDGEACRVN 91 (117)
Q Consensus 81 mQVDGEPW~Q~ 91 (117)
+||.|.||+.+
T Consensus 5 ~~~~g~~~~l~ 15 (55)
T 2x48_A 5 IQVQGVRYYVE 15 (55)
T ss_dssp EEETTEEEEEC
T ss_pred HhhccHHHHHh
Confidence 79999999766
No 17
>3hks_A EIF-5A-2, eukaryotic translation initiation factor 5A-2; beta barrel, alternative splicing, hypusine, protein biosynthesis; 2.30A {Arabidopsis thaliana}
Probab=28.52 E-value=26 Score=26.10 Aligned_cols=20 Identities=10% Similarity=0.368 Sum_probs=14.5
Q ss_pred ecCcceeecCccceecCcEEEEee
Q psy12045 76 TKTIPMQVDGEACRVNPSIILLNH 99 (117)
Q Consensus 76 ~k~LPmQVDGEPW~Q~Ps~I~Is~ 99 (117)
++.+-+.+||.||. +|.++|
T Consensus 35 rkG~~I~idG~P~~----Vve~~~ 54 (167)
T 3hks_A 35 RKGGHIVIKNRPCK----VVEVST 54 (167)
T ss_dssp CTTSEEEETTEEEE----EEEEEE
T ss_pred cCCCEEEECCEEEE----EEEEEE
Confidence 46678899999995 455544
No 18
>2l3u_A YBBR family protein; beta strand, figure eight, figure 8, structural genomics, PS biology, protein structure initiative; NMR {Desulfitobacterium hafniense}
Probab=26.72 E-value=12 Score=24.66 Aligned_cols=35 Identities=6% Similarity=0.001 Sum_probs=17.2
Q ss_pred ecCcceeec----CccceecCcEEEEeecCccccccccc
Q psy12045 76 TKTIPMQVD----GEACRVNPSIILLNHLNKAPMLAKRK 110 (117)
Q Consensus 76 ~k~LPmQVD----GEPW~Q~Ps~I~Is~~nQa~ML~k~K 110 (117)
...+|+++- |.-+...|.+|.|++.+-...|.+-+
T Consensus 4 i~~VPV~v~n~~~~~~v~~~p~~V~V~v~G~~~~l~~l~ 42 (98)
T 2l3u_A 4 LYDLPIVLRNLPEDLVLEKPLPEVSVTIRAYPEILNNLT 42 (98)
T ss_dssp CCCCSCEEESCCTTEEESSCCCCCCCEEECCHHHHTTCC
T ss_pred EEecCEEEEeCCCceEEEcCCCEEEEEEEECHHHhhhCC
Confidence 345666653 22333345666666655444444433
No 19
>1iz6_A Initiation factor 5A; SH3-like barrel, OB fold, biosynthetic protein; 2.00A {Pyrococcus horikoshii} SCOP: b.34.5.2 b.40.4.5
Probab=26.41 E-value=36 Score=24.15 Aligned_cols=14 Identities=29% Similarity=0.513 Sum_probs=11.6
Q ss_pred ecCcceeecCccce
Q psy12045 76 TKTIPMQVDGEACR 89 (117)
Q Consensus 76 ~k~LPmQVDGEPW~ 89 (117)
++.+-+.+||.||.
T Consensus 13 kkG~~i~~~g~p~~ 26 (138)
T 1iz6_A 13 KPGRYIIIDDEPCR 26 (138)
T ss_dssp CTTSEEEETTEEEE
T ss_pred cCCCEEEECCEEEE
Confidence 46678899999995
No 20
>3oyy_A EF-P, elongation factor P; translation; 1.75A {Pseudomonas aeruginosa}
Probab=25.29 E-value=37 Score=25.54 Aligned_cols=21 Identities=10% Similarity=0.021 Sum_probs=14.7
Q ss_pred eecCcceeecCccceecCcEEEEee
Q psy12045 75 TTKTIPMQVDGEACRVNPSIILLNH 99 (117)
Q Consensus 75 t~k~LPmQVDGEPW~Q~Ps~I~Is~ 99 (117)
+++.+-+.+||.||. ++.++|
T Consensus 10 lk~G~~I~~dg~p~~----Vve~~~ 30 (191)
T 3oyy_A 10 FRAGQVANINGAPWV----IQKAEF 30 (191)
T ss_dssp CCTTCEEEETTEEEE----EEEEEE
T ss_pred CCCCCEEEECCEEEE----EEEEEe
Confidence 346678899999994 444544
No 21
>3tre_A EF-P, elongation factor P; protein synthesis, translation; 2.90A {Coxiella burnetii}
Probab=23.27 E-value=43 Score=25.15 Aligned_cols=21 Identities=29% Similarity=0.461 Sum_probs=14.9
Q ss_pred eecCcceeecCccceecCcEEEEee
Q psy12045 75 TTKTIPMQVDGEACRVNPSIILLNH 99 (117)
Q Consensus 75 t~k~LPmQVDGEPW~Q~Ps~I~Is~ 99 (117)
+++.+-+.+||.||. ++.++|
T Consensus 12 lkkG~~I~~dG~p~~----Vve~~~ 32 (191)
T 3tre_A 12 FRGGLKVMVDGDPCS----IIDNEF 32 (191)
T ss_dssp CCTTCEEEETTEEEE----EEEEEE
T ss_pred CCCCCEEEECCEEEE----EEEEEE
Confidence 346677899999994 455555
No 22
>3d82_A Cupin 2, conserved barrel domain protein; structural genomics, joint center for structural genomics; 2.05A {Shewanella frigidimarina ncimb 400}
Probab=23.10 E-value=1.2e+02 Score=17.95 Aligned_cols=32 Identities=9% Similarity=0.100 Sum_probs=19.8
Q ss_pred EEeecCcceeecCccceecCcEEEEeecCccc
Q psy12045 73 IVTTKTIPMQVDGEACRVNPSIILLNHLNKAP 104 (117)
Q Consensus 73 Itt~k~LPmQVDGEPW~Q~Ps~I~Is~~nQa~ 104 (117)
+.+...+-+.++|..|...|+.+.+-.++...
T Consensus 55 ~v~~G~~~~~~~~~~~~l~~Gd~~~ip~~~~H 86 (102)
T 3d82_A 55 IVMEGTLQIAFRDQNITLQAGEMYVIPKGVEH 86 (102)
T ss_dssp EEEESEEEEECSSCEEEEETTEEEEECTTCCB
T ss_pred EEEeCEEEEEECCEEEEEcCCCEEEECCCCeE
Confidence 33444455667788888878776665555433
No 23
>2a6v_A EMP46P; beta sandwich, carbohydrate binding protein, cargo receptor, structural genomics, NPPSFA; 1.52A {Saccharomyces cerevisiae} SCOP: b.29.1.13 PDB: 2a6w_A 2a6x_A
Probab=22.48 E-value=47 Score=25.36 Aligned_cols=22 Identities=14% Similarity=0.394 Sum_probs=17.3
Q ss_pred eEEEEe----ecCcceeecCccceec
Q psy12045 70 SAKIVT----TKTIPMQVDGEACRVN 91 (117)
Q Consensus 70 ~VrItt----~k~LPmQVDGEPW~Q~ 91 (117)
.|+|+. ++.|-|+||+..|++.
T Consensus 159 ~~ri~Y~~~~~~~l~v~id~~~Cf~~ 184 (226)
T 2a6v_A 159 TLRLTYNPLDNHLLKLQMDNRVCFQT 184 (226)
T ss_dssp EEEEEEEGGGTSEEEEEETTEEEEEE
T ss_pred EEEEEEEccCCCEEEEEEcCCeeEEE
Confidence 688887 3459999999888764
No 24
>2arc_A ARAC, arabinose operon regulatory protein; transcription factor, carbohydrate binding, coiled-coil, jelly roll; HET: ARA; 1.50A {Escherichia coli} SCOP: b.82.4.1 PDB: 2aac_A* 1xja_A 2ara_A
Probab=20.93 E-value=1.1e+02 Score=19.69 Aligned_cols=38 Identities=13% Similarity=0.066 Sum_probs=28.2
Q ss_pred eEEEEeecCcceeecCccceecCcEEEEeecCcccccc
Q psy12045 70 SAKIVTTKTIPMQVDGEACRVNPSIILLNHLNKAPMLA 107 (117)
Q Consensus 70 ~VrItt~k~LPmQVDGEPW~Q~Ps~I~Is~~nQa~ML~ 107 (117)
.+-+.+....-+.++|..+...|+.+.+-.+++.....
T Consensus 40 ~i~~v~~G~~~~~i~~~~~~l~~Gd~~~i~p~~~H~~~ 77 (164)
T 2arc_A 40 ILNLTIRGQGVVKNQGREFVCRPGDILLFPPGEIHHYG 77 (164)
T ss_dssp EEEEEEEECEEEEETTEEEEECTTCEEEECTTCCEEEE
T ss_pred EEEEEEEeEEEEEECCEEEEecCCeEEEEcCCCCEEEE
Confidence 35556677788899999999999888877777655443
No 25
>2eif_A IF-5A, protein (eukaryotic translation initiation factor; EIF-5A, OB-fold, structural genomics, BSGC STRU funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: b.34.5.2 b.40.4.5 PDB: 1eif_A
Probab=20.49 E-value=50 Score=23.31 Aligned_cols=20 Identities=20% Similarity=0.375 Sum_probs=14.6
Q ss_pred ecCcceeecCccceecCcEEEEee
Q psy12045 76 TKTIPMQVDGEACRVNPSIILLNH 99 (117)
Q Consensus 76 ~k~LPmQVDGEPW~Q~Ps~I~Is~ 99 (117)
++..-+.+||.||. ++.++|
T Consensus 17 r~G~~I~~~g~p~~----V~e~~~ 36 (136)
T 2eif_A 17 KVGQYVMIDGVPCE----IVDISV 36 (136)
T ss_dssp CTTSEEEETTEEEE----EEEEEE
T ss_pred cCCCEEEECCEEEE----EEEEEe
Confidence 46677899999995 455554
No 26
>3dsh_A IRF-5, interferon regulatory factor 5; phosphoactivation induced dimerization, DNA-binding, nucleus transcription, transcription regulation; 2.00A {Homo sapiens}
Probab=20.10 E-value=24 Score=27.68 Aligned_cols=13 Identities=38% Similarity=0.570 Sum_probs=10.5
Q ss_pred CccccceecceEE
Q psy12045 60 GHGIAICQCKSAK 72 (117)
Q Consensus 60 gsg~RLaQc~~Vr 72 (117)
+.+.|||||++.-
T Consensus 103 lyakRlcq~rVfW 115 (246)
T 3dsh_A 103 LYAIRLCQCKVFW 115 (246)
T ss_dssp EEEEECSSSCEEE
T ss_pred EEEEecCCCCeEe
Confidence 4567999999876
Done!