RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy12045
(117 letters)
>gnl|CDD|233191 TIGR00927, 2A1904, K+-dependent Na+/Ca+ exchanger. [Transport and
binding proteins, Cations and iron carrying compounds].
Length = 1096
Score = 55.0 bits (132), Expect = 5e-10
Identities = 28/48 (58%), Positives = 36/48 (75%)
Query: 8 EEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEE 55
E K++E+ + + + E+EEEEEE+EEEEEEEEEEEEEEEEE E
Sbjct: 844 EAKQDEKGVDGGGGSDGGDSEEEEEEEEEEEEEEEEEEEEEEEEEENE 891
Score = 53.8 bits (129), Expect = 1e-09
Identities = 28/53 (52%), Positives = 38/53 (71%)
Query: 5 EEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEELQ 57
E + E +++EK + + + +EEEEEE+EEEEEEEEEEEEEEEEEE +
Sbjct: 840 ENQGEAKQDEKGVDGGGGSDGGDSEEEEEEEEEEEEEEEEEEEEEEEEEENEE 892
Score = 53.1 bits (127), Expect = 2e-09
Identities = 28/50 (56%), Positives = 38/50 (76%)
Query: 2 GKREEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEE 51
G+ +++E+ + + + EEEEEE+EEEEEE+EEEEEEEEEEEE EE
Sbjct: 843 GEAKQDEKGVDGGGGSDGGDSEEEEEEEEEEEEEEEEEEEEEEEEEENEE 892
Score = 51.9 bits (124), Expect = 7e-09
Identities = 30/54 (55%), Positives = 36/54 (66%)
Query: 5 EEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEELQA 58
+ + + EEEEEEEEEEEEE+EEEEEE+EEEEE EE E E + QA
Sbjct: 853 DGGGGSDGGDSEEEEEEEEEEEEEEEEEEEEEEEEEENEEPLSLEWPETRQKQA 906
Score = 50.8 bits (121), Expect = 2e-08
Identities = 28/54 (51%), Positives = 38/54 (70%)
Query: 2 GKREEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEE 55
G++E E + E K++E+ + + + EEE+EEEEEEEEEEEEEEEEEEE
Sbjct: 833 GEQELNAENQGEAKQDEKGVDGGGGSDGGDSEEEEEEEEEEEEEEEEEEEEEEE 886
Score = 46.5 bits (110), Expect = 5e-07
Identities = 25/58 (43%), Positives = 37/58 (63%), Gaps = 4/58 (6%)
Query: 2 GKREEEEEKEEEEKEEEEEEEEEEEEEDEEE----EEEDEEEEEEEEEEEEEEEEEEE 55
++E E+E + + E +++E+ + + E+EEEEEEEEEEEEEEEEEEE
Sbjct: 827 EVKDETGEQELNAENQGEAKQDEKGVDGGGGSDGGDSEEEEEEEEEEEEEEEEEEEEE 884
Score = 44.2 bits (104), Expect = 3e-06
Identities = 24/56 (42%), Positives = 36/56 (64%)
Query: 2 GKREEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEELQ 57
+ E+E E + E +++E+ + + + +EEEEEEEEEEEEEEEEEEE +
Sbjct: 830 DETGEQELNAENQGEAKQDEKGVDGGGGSDGGDSEEEEEEEEEEEEEEEEEEEEEE 885
Score = 40.4 bits (94), Expect = 6e-05
Identities = 29/82 (35%), Positives = 39/82 (47%), Gaps = 31/82 (37%)
Query: 5 EEEEEKEEEEKEEEEEEEEEEEEEDEEEE------------------------------- 33
E E +++E + + E + ++ E +DE E
Sbjct: 806 ETEAGEKDEHEGQSETQADDTEVKDETGEQELNAENQGEAKQDEKGVDGGGGSDGGDSEE 865
Query: 34 EEDEEEEEEEEEEEEEEEEEEE 55
EE+EEEEEEEEEEEEEEEEEEE
Sbjct: 866 EEEEEEEEEEEEEEEEEEEEEE 887
Score = 38.4 bits (89), Expect = 3e-04
Identities = 25/62 (40%), Positives = 34/62 (54%), Gaps = 1/62 (1%)
Query: 2 GKREEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEE-EEEEEELQAGG 60
G+ E E E E K E+E E E E +E + + E + EE E E E E E E+E E++ G
Sbjct: 677 GENESEGEIPAERKGEQEGEGEIEAKEADHKGETEAEEVEHEGETEAEGTEDEGEIETGE 736
Query: 61 HG 62
G
Sbjct: 737 EG 738
Score = 37.7 bits (87), Expect = 5e-04
Identities = 27/58 (46%), Positives = 30/58 (51%), Gaps = 1/58 (1%)
Query: 6 EEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEE-EEEEEEEEEEEEEEEELQAGGHG 62
E E KE + K E E EE E E E E E EDE E E EE EE E+E E E +
Sbjct: 698 EIEAKEADHKGETEAEEVEHEGETEAEGTEDEGEIETGEEGEEVEDEGEGEAEGKHEV 755
Score = 36.9 bits (85), Expect = 0.001
Identities = 24/54 (44%), Positives = 32/54 (59%)
Query: 2 GKREEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEE 55
G++E E E E +E + + E E EE E + E E E E+E E E EE EE E+E
Sbjct: 691 GEQEGEGEIEAKEADHKGETEAEEVEHEGETEAEGTEDEGEIETGEEGEEVEDE 744
Score = 36.9 bits (85), Expect = 0.001
Identities = 27/59 (45%), Positives = 35/59 (59%), Gaps = 1/59 (1%)
Query: 5 EEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEE-ELQAGGHG 62
E E +E EE E+E E E E + E E E + E E E E E E +E+E+E E+QAG G
Sbjct: 731 EIETGEEGEEVEDEGEGEAEGKHEVETEGDRKETEHEGETEAEGKEDEDEGEIQAGEDG 789
Score = 36.1 bits (83), Expect = 0.002
Identities = 22/65 (33%), Positives = 32/65 (49%), Gaps = 4/65 (6%)
Query: 2 GKREEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEE----EEEEEELQ 57
G+ EE E E++ E E + E E E + E + E+E E E E +E E E EE++
Sbjct: 657 GENGEESGGEAEQEGETETKGENESEGEIPAERKGEQEGEGEIEAKEADHKGETEAEEVE 716
Query: 58 AGGHG 62
G
Sbjct: 717 HEGET 721
Score = 35.7 bits (82), Expect = 0.003
Identities = 20/55 (36%), Positives = 27/55 (49%)
Query: 6 EEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEELQAGG 60
E E + EE E E+E E E + E E E + E + E+E E E E +E G
Sbjct: 654 EAEGENGEESGGEAEQEGETETKGENESEGEIPAERKGEQEGEGEIEAKEADHKG 708
Score = 35.0 bits (80), Expect = 0.004
Identities = 24/59 (40%), Positives = 32/59 (54%)
Query: 2 GKREEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEELQAGG 60
K + + + E E+ E E E E E EDE E E EE EE E+E E E E + E++ G
Sbjct: 701 AKEADHKGETEAEEVEHEGETEAEGTEDEGEIETGEEGEEVEDEGEGEAEGKHEVETEG 759
Score = 35.0 bits (80), Expect = 0.005
Identities = 24/61 (39%), Positives = 35/61 (57%)
Query: 2 GKREEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEELQAGGH 61
+R+ E+E E E + +E + + E E E+ E E E E E E+E E E EE EE++ G
Sbjct: 687 AERKGEQEGEGEIEAKEADHKGETEAEEVEHEGETEAEGTEDEGEIETGEEGEEVEDEGE 746
Query: 62 G 62
G
Sbjct: 747 G 747
Score = 34.6 bits (79), Expect = 0.007
Identities = 20/56 (35%), Positives = 29/56 (51%)
Query: 5 EEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEELQAGG 60
E E E E + EE E E+E + E + E+E E E E + E+E E E++A
Sbjct: 648 EGERPTEAEGENGEESGGEAEQEGETETKGENESEGEIPAERKGEQEGEGEIEAKE 703
Score = 34.6 bits (79), Expect = 0.008
Identities = 22/56 (39%), Positives = 28/56 (50%)
Query: 4 REEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEELQAG 59
+E + + E + EE E E E E E E+E E E EE EE E+E E E E
Sbjct: 700 EAKEADHKGETEAEEVEHEGETEAEGTEDEGEIETGEEGEEVEDEGEGEAEGKHEV 755
Score = 34.2 bits (78), Expect = 0.010
Identities = 24/57 (42%), Positives = 30/57 (52%)
Query: 5 EEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEELQAGGH 61
E EE E E + E E E+E E E EE EE E+E E E E + E E E + + H
Sbjct: 710 TEAEEVEHEGETEAEGTEDEGEIETGEEGEEVEDEGEGEAEGKHEVETEGDRKETEH 766
Score = 33.4 bits (76), Expect = 0.017
Identities = 23/61 (37%), Positives = 26/61 (42%), Gaps = 2/61 (3%)
Query: 2 GKREEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEELQAGGH 61
G E E E EE E E E E EE E E+E E E + E E E E+ A
Sbjct: 633 GDVAEAEHTGERTGEEGERPTEAEGENGEESG--GEAEQEGETETKGENESEGEIPAERK 690
Query: 62 G 62
G
Sbjct: 691 G 691
Score = 33.0 bits (75), Expect = 0.023
Identities = 27/83 (32%), Positives = 36/83 (43%), Gaps = 29/83 (34%)
Query: 2 GKREEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEE--------------------- 40
G + E + E E E++E E + E + ++ E +DE E
Sbjct: 796 GAEGKVEHEGETEAGEKDEHEGQSETQADDTEVKDETGEQELNAENQGEAKQDEKGVDGG 855
Query: 41 --------EEEEEEEEEEEEEEE 55
EEEEEEEEEEEEEEE
Sbjct: 856 GGSDGGDSEEEEEEEEEEEEEEE 878
Score = 32.7 bits (74), Expect = 0.031
Identities = 24/61 (39%), Positives = 32/61 (52%)
Query: 2 GKREEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEELQAGGH 61
G+ E EE + E E E E E+E E E EE EE ++E E E E + E E E + +
Sbjct: 708 GETEAEEVEHEGETEAEGTEDEGEIETGEEGEEVEDEGEGEAEGKHEVETEGDRKETEHE 767
Query: 62 G 62
G
Sbjct: 768 G 768
Score = 31.5 bits (71), Expect = 0.072
Identities = 21/59 (35%), Positives = 32/59 (54%)
Query: 2 GKREEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEELQAGG 60
G+ EE E E E + E + E E E + E E E + E E +E+E+E E + E+ + G
Sbjct: 735 GEEGEEVEDEGEGEAEGKHEVETEGDRKETEHEGETEAEGKEDEDEGEIQAGEDGEMKG 793
Score = 31.5 bits (71), Expect = 0.081
Identities = 21/61 (34%), Positives = 30/61 (49%)
Query: 2 GKREEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEELQAGGH 61
E E + E ++E E E EE EE E+E E + E + E E E + +E E E +
Sbjct: 714 EVEHEGETEAEGTEDEGEIETGEEGEEVEDEGEGEAEGKHEVETEGDRKETEHEGETEAE 773
Query: 62 G 62
G
Sbjct: 774 G 774
Score = 30.7 bits (69), Expect = 0.13
Identities = 21/63 (33%), Positives = 31/63 (49%), Gaps = 5/63 (7%)
Query: 5 EEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEE-----EEEELQAG 59
E+E E E E K E E E + +E E E E E + +E+E+E E + E+ +E
Sbjct: 742 EDEGEGEAEGKHEVETEGDRKETEHEGETEAEGKEDEDEGEIQAGEDGEMKGDEGAEGKV 801
Query: 60 GHG 62
H
Sbjct: 802 EHE 804
Score = 30.7 bits (69), Expect = 0.15
Identities = 19/54 (35%), Positives = 28/54 (51%)
Query: 6 EEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEELQAG 59
E + KE E + E E E +E+E+E E + ED E + +E E + E E E
Sbjct: 758 EGDRKETEHEGETEAEGKEDEDEGEIQAGEDGEMKGDEGAEGKVEHEGETEAGE 811
Score = 30.7 bits (69), Expect = 0.15
Identities = 19/53 (35%), Positives = 30/53 (56%)
Query: 3 KREEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEE 55
K E E + E E +E+E+E E + ED E + ++ E + E E E E E++E
Sbjct: 762 KETEHEGETEAEGKEDEDEGEIQAGEDGEMKGDEGAEGKVEHEGETEAGEKDE 814
Score = 30.3 bits (68), Expect = 0.23
Identities = 21/61 (34%), Positives = 33/61 (54%)
Query: 2 GKREEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEELQAGGH 61
+ EE E++ E E E + E E E + ++ E E E E E +E+E+E E + E+ G
Sbjct: 736 EEGEEVEDEGEGEAEGKHEVETEGDRKETEHEGETEAEGKEDEDEGEIQAGEDGEMKGDE 795
Query: 62 G 62
G
Sbjct: 796 G 796
Score = 29.6 bits (66), Expect = 0.36
Identities = 15/47 (31%), Positives = 26/47 (55%)
Query: 6 EEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEE 52
E + E E + E E E E E+DE E + + + ++ E ++E E+E
Sbjct: 790 EMKGDEGAEGKVEHEGETEAGEKDEHEGQSETQADDTEVKDETGEQE 836
Score = 28.8 bits (64), Expect = 0.70
Identities = 19/60 (31%), Positives = 32/60 (53%)
Query: 3 KREEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEELQAGGHG 62
++E E E E E + +E+E+E E + ++ E + DE E + E E E E E++ G
Sbjct: 761 RKETEHEGETEAEGKEDEDEGEIQAGEDGEMKGDEGAEGKVEHEGETEAGEKDEHEGQSE 820
Score = 26.9 bits (59), Expect = 2.8
Identities = 16/49 (32%), Positives = 22/49 (44%)
Query: 7 EEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEE 55
+ + E E E EE E + E E +E E E+E E E + E E
Sbjct: 632 KGDVAEAEHTGERTGEEGERPTEAEGENGEESGGEAEQEGETETKGENE 680
>gnl|CDD|235250 PRK04195, PRK04195, replication factor C large subunit;
Provisional.
Length = 482
Score = 53.8 bits (130), Expect = 1e-09
Identities = 32/57 (56%), Positives = 48/57 (84%)
Query: 3 KREEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEELQAG 59
KREEE+++++++ +++EEEEEEE E++EEE EEEEEE EEE+EEEEE+++ QA
Sbjct: 422 KREEEKKEKKKKAFAGKKKEEEEEEEKEKKEEEKEEEEEEAEEEKEEEEEKKKKQAT 478
Score = 53.0 bits (128), Expect = 2e-09
Identities = 29/59 (49%), Positives = 46/59 (77%)
Query: 2 GKREEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEELQAGG 60
K E++ E+E++EK+++ +++EEE+EEE+E+ EEE+EEEEEE EEE+EEEE +
Sbjct: 417 EKAEKKREEEKKEKKKKAFAGKKKEEEEEEEKEKKEEEKEEEEEEAEEEKEEEEEKKKK 475
Score = 49.5 bits (119), Expect = 4e-08
Identities = 28/53 (52%), Positives = 43/53 (81%)
Query: 3 KREEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEE 55
E+ E+K EEEK+E++++ ++++EEEEEE E++EEE+EEEEEE EEE+E
Sbjct: 415 IVEKAEKKREEEKKEKKKKAFAGKKKEEEEEEEKEKKEEEKEEEEEEAEEEKE 467
Score = 49.1 bits (118), Expect = 5e-08
Identities = 26/53 (49%), Positives = 43/53 (81%)
Query: 3 KREEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEE 55
K E+ EK+ EE+++E++++ ++ EEEEEE++E++EEE+EEEEEE EEE+
Sbjct: 414 KIVEKAEKKREEEKKEKKKKAFAGKKKEEEEEEEKEKKEEEKEEEEEEAEEEK 466
Score = 48.8 bits (117), Expect = 6e-08
Identities = 26/53 (49%), Positives = 45/53 (84%)
Query: 3 KREEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEE 55
+ E+++EEE+KE++++ +++E+EEEEE++++EEE+EEEEEE EEE+EE
Sbjct: 416 VEKAEKKREEEKKEKKKKAFAGKKKEEEEEEEKEKKEEEKEEEEEEAEEEKEE 468
Score = 48.8 bits (117), Expect = 6e-08
Identities = 25/61 (40%), Positives = 47/61 (77%)
Query: 1 MGKREEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEELQAGG 60
+ ++ E++ +EE+++++++ +++EE+EEEE+E +EEE+EEEEEE EEE+EEE +
Sbjct: 415 IVEKAEKKREEEKKEKKKKAFAGKKKEEEEEEEKEKKEEEKEEEEEEAEEEKEEEEEKKK 474
Query: 61 H 61
Sbjct: 475 K 475
Score = 47.2 bits (113), Expect = 3e-07
Identities = 25/53 (47%), Positives = 44/53 (83%)
Query: 3 KREEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEE 55
K ++ EK E+++EEE++E++++ +++EEE+EEE+E++EEE+EEEEEE E
Sbjct: 411 KIKKIVEKAEKKREEEKKEKKKKAFAGKKKEEEEEEEKEKKEEEKEEEEEEAE 463
Score = 46.8 bits (112), Expect = 4e-07
Identities = 24/53 (45%), Positives = 43/53 (81%)
Query: 3 KREEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEE 55
K+ E+ +++ E+E++E++++ + +EEEEE+E+E++EEE+EEEEEE EEE
Sbjct: 413 KKIVEKAEKKREEEKKEKKKKAFAGKKKEEEEEEEKEKKEEEKEEEEEEAEEE 465
Score = 45.3 bits (108), Expect = 1e-06
Identities = 23/54 (42%), Positives = 40/54 (74%)
Query: 2 GKREEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEE 55
K ++ +K E+ E++ EEE++E+++ ++ EEEEEEE+E++EEE+EEEE
Sbjct: 406 KKATKKIKKIVEKAEKKREEEKKEKKKKAFAGKKKEEEEEEEKEKKEEEKEEEE 459
Score = 44.5 bits (106), Expect = 2e-06
Identities = 23/53 (43%), Positives = 43/53 (81%)
Query: 3 KREEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEE 55
K+ ++ ++ E+K EEE++E++++ +++EE+EEEE+E++EEE+EEEEEE
Sbjct: 410 KKIKKIVEKAEKKREEEKKEKKKKAFAGKKKEEEEEEEKEKKEEEKEEEEEEA 462
Score = 42.6 bits (101), Expect = 1e-05
Identities = 19/53 (35%), Positives = 39/53 (73%)
Query: 3 KREEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEE 55
++ +K ++ E+ E++ EEE++E +++ +++EEEEEEE+E++EEE+E
Sbjct: 404 GSKKATKKIKKIVEKAEKKREEEKKEKKKKAFAGKKKEEEEEEEKEKKEEEKE 456
Score = 40.7 bits (96), Expect = 5e-05
Identities = 19/54 (35%), Positives = 40/54 (74%)
Query: 2 GKREEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEE 55
G ++ ++ ++ ++ E++ EEE++E+ ++ ++EEEEEEE+E++EEE+EE
Sbjct: 404 GSKKATKKIKKIVEKAEKKREEEKKEKKKKAFAGKKKEEEEEEEKEKKEEEKEE 457
Score = 39.1 bits (92), Expect = 1e-04
Identities = 17/53 (32%), Positives = 40/53 (75%)
Query: 6 EEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEELQA 58
++ K+ ++ E+ E++ EEE+++++++ +++EEEEEEE+E++EEE+ +
Sbjct: 406 KKATKKIKKIVEKAEKKREEEKKEKKKKAFAGKKKEEEEEEEKEKKEEEKEEE 458
Score = 30.7 bits (70), Expect = 0.14
Identities = 17/51 (33%), Positives = 32/51 (62%)
Query: 5 EEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEE 55
EE E +K ++ ++ E+ E + EEE+ E++++ +++EEEEEEE
Sbjct: 397 EEIEFLTGSKKATKKIKKIVEKAEKKREEEKKEKKKKAFAGKKKEEEEEEE 447
Score = 30.3 bits (69), Expect = 0.17
Identities = 16/51 (31%), Positives = 33/51 (64%)
Query: 5 EEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEE 55
EEE E K+ ++ ++ E+ +++ EEE +E++++ +++EEEEEE
Sbjct: 396 EEEIEFLTGSKKATKKIKKIVEKAEKKREEEKKEKKKKAFAGKKKEEEEEE 446
Score = 29.9 bits (68), Expect = 0.22
Identities = 13/51 (25%), Positives = 33/51 (64%)
Query: 5 EEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEE 55
EEE + ++ ++ ++ E+ E++ EE+++E++++ +++EEEEE
Sbjct: 395 TEEEIEFLTGSKKATKKIKKIVEKAEKKREEEKKEKKKKAFAGKKKEEEEE 445
>gnl|CDD|217203 pfam02724, CDC45, CDC45-like protein. CDC45 is an essential gene
required for initiation of DNA replication in S.
cerevisiae, forming a complex with MCM5/CDC46.
Homologues of CDC45 have been identified in human, mouse
and smut fungus among others.
Length = 583
Score = 49.2 bits (118), Expect = 5e-08
Identities = 13/57 (22%), Positives = 39/57 (68%)
Query: 2 GKREEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEELQA 58
G EEE + E + + EE++++++E +EE++E + E++E+++++++++++
Sbjct: 104 GDIEEELQDEPRYDDAYRDLEEDDDDDEESDEEDEESSKSEDDEDDDDDDDDDDIAT 160
Score = 47.3 bits (113), Expect = 2e-07
Identities = 14/55 (25%), Positives = 39/55 (70%)
Query: 1 MGKREEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEE 55
+ EEE ++E + ++ + EE+++D+EE +E++EE + E++E++++++++
Sbjct: 101 FDDGDIEEELQDEPRYDDAYRDLEEDDDDDEESDEEDEESSKSEDDEDDDDDDDD 155
Score = 41.5 bits (98), Expect = 2e-05
Identities = 13/51 (25%), Positives = 32/51 (62%)
Query: 3 KREEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEE 53
+ + EE++ ++EE +EE+EE E++E+D++++++++ E E
Sbjct: 116 YDDAYRDLEEDDDDDEESDEEDEESSKSEDDEDDDDDDDDDDIATRERSLE 166
Score = 39.6 bits (93), Expect = 1e-04
Identities = 11/53 (20%), Positives = 33/53 (62%)
Query: 6 EEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEELQA 58
+ E+++++ EE +EE+EE + +++E+++D++++++ E E +
Sbjct: 121 RDLEEDDDDDEESDEEDEESSKSEDDEDDDDDDDDDDIATRERSLERRRRRRE 173
Score = 39.2 bits (92), Expect = 1e-04
Identities = 15/54 (27%), Positives = 33/54 (61%)
Query: 5 EEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEELQA 58
+EE ++E+EE + E++E++++++D+++ E E E EE+ EL+
Sbjct: 130 DEESDEEDEESSKSEDDEDDDDDDDDDDIATRERSLERRRRRREWEEKRAELEF 183
Score = 32.6 bits (75), Expect = 0.033
Identities = 11/38 (28%), Positives = 24/38 (63%)
Query: 22 EEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEELQAG 59
+ EEE +E +D + EE+++++EE +EE+ ++
Sbjct: 104 GDIEEELQDEPRYDDAYRDLEEDDDDDEESDEEDEESS 141
Score = 31.9 bits (73), Expect = 0.054
Identities = 11/40 (27%), Positives = 23/40 (57%)
Query: 23 EEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEELQAGGHG 62
+ EEE ++E D+ + EE+++++EE +EE +
Sbjct: 104 GDIEEELQDEPRYDDAYRDLEEDDDDDEESDEEDEESSKS 143
Score = 31.1 bits (71), Expect = 0.11
Identities = 13/52 (25%), Positives = 29/52 (55%)
Query: 5 EEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEEL 56
+EE++E + E++E+++++++++D E E E EE+ E E
Sbjct: 133 SDEEDEESSKSEDDEDDDDDDDDDDIATRERSLERRRRRREWEEKRAELEFY 184
>gnl|CDD|217927 pfam04147, Nop14, Nop14-like family. Emg1 and Nop14 are novel
proteins whose interaction is required for the
maturation of the 18S rRNA and for 40S ribosome
production.
Length = 809
Score = 47.7 bits (114), Expect = 2e-07
Identities = 22/53 (41%), Positives = 44/53 (83%)
Query: 3 KREEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEE 55
+ EEEEE ++++EE+++++ EEEE++ + ++EE+EE+E+ ++E++EEEEE
Sbjct: 321 EDEEEEEDGVDDEDEEDDDDDLEEEEEDVDLSDEEEDEEDEDSDDEDDEEEEE 373
Score = 47.7 bits (114), Expect = 2e-07
Identities = 25/53 (47%), Positives = 43/53 (81%)
Query: 3 KREEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEE 55
EEEE+ ++E EE+++++ EEEEED + +E+E+EE+E+ ++E++EEEEEE
Sbjct: 322 DEEEEEDGVDDEDEEDDDDDLEEEEEDVDLSDEEEDEEDEDSDDEDDEEEEEE 374
Score = 46.5 bits (111), Expect = 4e-07
Identities = 23/54 (42%), Positives = 46/54 (85%)
Query: 2 GKREEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEE 55
G+ EE+EE+EE+ ++E+EE+++++ E+EEE+ + +EEE+EE+E+ ++E++EE
Sbjct: 317 GQGEEDEEEEEDGVDDEDEEDDDDDLEEEEEDVDLSDEEEDEEDEDSDDEDDEE 370
Score = 46.1 bits (110), Expect = 6e-07
Identities = 23/52 (44%), Positives = 44/52 (84%)
Query: 5 EEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEEL 56
EEE+ ++E++E+++++ EEEEE+ + +EE++EE+E+ ++E++EEEEEEE
Sbjct: 325 EEEDGVDDEDEEDDDDDLEEEEEDVDLSDEEEDEEDEDSDDEDDEEEEEEEK 376
Score = 46.1 bits (110), Expect = 7e-07
Identities = 24/54 (44%), Positives = 45/54 (83%)
Query: 2 GKREEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEE 55
G+ +EEEE++ + E+EE+++++ EEE+E+ + DEEE+EE+E+ ++E++EEEE
Sbjct: 319 GEEDEEEEEDGVDDEDEEDDDDDLEEEEEDVDLSDEEEDEEDEDSDDEDDEEEE 372
Score = 45.8 bits (109), Expect = 7e-07
Identities = 23/53 (43%), Positives = 42/53 (79%)
Query: 5 EEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEELQ 57
+ EE EEEE++ ++E+EE++++D EEEEED + +EEE+EE+E+ ++E+ +
Sbjct: 317 GQGEEDEEEEEDGVDDEDEEDDDDDLEEEEEDVDLSDEEEDEEDEDSDDEDDE 369
Score = 45.8 bits (109), Expect = 8e-07
Identities = 23/57 (40%), Positives = 44/57 (77%)
Query: 2 GKREEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEELQA 58
+ E+ + E+EE ++++ EEEEE+ + +EEE++E+E+ ++E++EEEEEEE+E +
Sbjct: 324 EEEEDGVDDEDEEDDDDDLEEEEEDVDLSDEEEDEEDEDSDDEDDEEEEEEEKEKKK 380
Score = 44.2 bits (105), Expect = 3e-06
Identities = 22/54 (40%), Positives = 44/54 (81%)
Query: 2 GKREEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEE 55
+ EE+E+EEE+ ++E+EE+++++ +EEEE+ D +EEE+EE+E+ ++E++E
Sbjct: 316 LGQGEEDEEEEEDGVDDEDEEDDDDDLEEEEEDVDLSDEEEDEEDEDSDDEDDE 369
Score = 43.8 bits (104), Expect = 4e-06
Identities = 23/51 (45%), Positives = 42/51 (82%)
Query: 1 MGKREEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEE 51
G +E+EE ++++ EEEEE+ + +EE++EE+E+ ++E++EEEEEEE+E+
Sbjct: 328 DGVDDEDEEDDDDDLEEEEEDVDLSDEEEDEEDEDSDDEDDEEEEEEEKEK 378
Score = 42.3 bits (100), Expect = 1e-05
Identities = 20/50 (40%), Positives = 39/50 (78%)
Query: 7 EEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEEL 56
+ EE+E+EEE+ ++E+EE+D+++ EE+EE+ + +EEE+EE+E+ +
Sbjct: 316 LGQGEEDEEEEEDGVDDEDEEDDDDDLEEEEEDVDLSDEEEDEEDEDSDD 365
Score = 41.9 bits (99), Expect = 2e-05
Identities = 21/55 (38%), Positives = 38/55 (69%)
Query: 5 EEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEELQAG 59
++++ + EE+EEEEE+ +DE+EE++D++ EEEEE+ + +EEE+E
Sbjct: 308 PDDDDNFGLGQGEEDEEEEEDGVDDEDEEDDDDDLEEEEEDVDLSDEEEDEEDED 362
Score = 40.0 bits (94), Expect = 1e-04
Identities = 21/51 (41%), Positives = 37/51 (72%)
Query: 5 EEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEE 55
E +++ + EE+EEEEE+ D+E+EE+D+++ EEEEE+ + +EEE+
Sbjct: 307 EPDDDDNFGLGQGEEDEEEEEDGVDDEDEEDDDDDLEEEEEDVDLSDEEED 357
Score = 37.7 bits (88), Expect = 5e-04
Identities = 18/51 (35%), Positives = 36/51 (70%)
Query: 5 EEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEE 55
+E E +++ + EE+EEEEED ++E++E+++++ EEEEE+ + +E
Sbjct: 304 DEFEPDDDDNFGLGQGEEDEEEEEDGVDDEDEEDDDDDLEEEEEDVDLSDE 354
Score = 37.3 bits (87), Expect = 8e-04
Identities = 17/51 (33%), Positives = 37/51 (72%)
Query: 5 EEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEE 55
++E E ++++ + EE+EEEE++ ++EDEE+++++ EEEEE+ + +
Sbjct: 303 DDEFEPDDDDNFGLGQGEEDEEEEEDGVDDEDEEDDDDDLEEEEEDVDLSD 353
Score = 36.9 bits (86), Expect = 0.001
Identities = 19/58 (32%), Positives = 38/58 (65%)
Query: 4 REEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEELQAGGH 61
EEE+ KE + ++E E ++++ + EEDEEEEE+ ++E+EE+++++L+
Sbjct: 290 EEEEDSKESADDLDDEFEPDDDDNFGLGQGEEDEEEEEDGVDDEDEEDDDDDLEEEEE 347
Score = 36.5 bits (85), Expect = 0.002
Identities = 17/52 (32%), Positives = 36/52 (69%)
Query: 5 EEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEEL 56
+ ++E E ++ + + EE+EE+EE+ +DE+EE+++++ EEEEE+ +
Sbjct: 301 DLDDEFEPDDDDNFGLGQGEEDEEEEEDGVDDEDEEDDDDDLEEEEEDVDLS 352
Score = 35.7 bits (83), Expect = 0.003
Identities = 17/56 (30%), Positives = 38/56 (67%)
Query: 1 MGKREEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEEL 56
++ +++ E + ++ + EE+E+EEE+ D+E+EE+++++ EEEEE+ +L
Sbjct: 296 KESADDLDDEFEPDDDDNFGLGQGEEDEEEEEDGVDDEDEEDDDDDLEEEEEDVDL 351
Score = 35.4 bits (82), Expect = 0.003
Identities = 21/55 (38%), Positives = 38/55 (69%)
Query: 1 MGKREEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEE 55
M EE++E+EE+ KE ++ ++E E +D++ + EE+EEEEE+ ++E+EE
Sbjct: 282 MRGEEEDDEEEEDSKESADDLDDEFEPDDDDNFGLGQGEEDEEEEEDGVDDEDEE 336
Score = 34.2 bits (79), Expect = 0.008
Identities = 19/53 (35%), Positives = 33/53 (62%)
Query: 3 KREEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEE 55
K EEE KEE E+ ++ E E EEE++E+EE+ +E ++ ++E E ++
Sbjct: 258 KTEEELAKEEAERLKKLEAERLRRMRGEEEDDEEEEDSKESADDLDDEFEPDD 310
Score = 34.2 bits (79), Expect = 0.009
Identities = 20/49 (40%), Positives = 37/49 (75%)
Query: 3 KREEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEE 51
EEEE+ + ++EE+EE+E+ ++E+DEEEEEE++E+++++ E E
Sbjct: 342 LEEEEEDVDLSDEEEDEEDEDSDDEDDEEEEEEEKEKKKKKSAESTRSE 390
Score = 26.5 bits (59), Expect = 4.0
Identities = 9/47 (19%), Positives = 27/47 (57%)
Query: 8 EEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEE 54
E ++++ ++++ ++++ D ++ E++EE+EEE+ E
Sbjct: 124 SEIDKDDDVRDDDDFDDDDLGDLASDDRAAHFGGGEDDEEDEEEQPE 170
>gnl|CDD|214486 smart00045, DAGKa, Diacylglycerol kinase accessory domain
(presumed). Diacylglycerol (DAG) is a second messenger
that acts as a protein kinase C activator. DAG can be
produced from the hydrolysis of phosphatidylinositol
4,5-bisphosphate (PIP2) by a phosphoinositide-specific
phospholipase C and by the degradation of
phosphatidylcholine (PC) by a phospholipase C or the
concerted actions of phospholipase D and phosphatidate
phosphohydrolase. This domain might either be an
accessory domain or else contribute to the catalytic
domain. Bacterial homologues are known.
Length = 160
Score = 46.6 bits (111), Expect = 2e-07
Identities = 18/34 (52%), Positives = 20/34 (58%), Gaps = 2/34 (5%)
Query: 56 LQAGGHGIAICQCKSAKIV--TTKTIPMQVDGEA 87
Q G G I QC +I T+KTIPMQVDGE
Sbjct: 127 RQVGLAGRRIAQCSEVRITIKTSKTIPMQVDGEP 160
>gnl|CDD|216019 pfam00609, DAGK_acc, Diacylglycerol kinase accessory domain.
Diacylglycerol (DAG) is a second messenger that acts as
a protein kinase C activator. This domain is assumed to
be an accessory domain: its function is unknown.
Length = 157
Score = 46.4 bits (111), Expect = 2e-07
Identities = 15/33 (45%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
Query: 56 LQAGGH-GIAICQCKSAKIVTTKTIPMQVDGEA 87
+Q G I Q +I T K IPMQVDGE
Sbjct: 125 VQVGLGSAKRIAQGGPIRIETKKKIPMQVDGEP 157
>gnl|CDD|217049 pfam02459, Adeno_terminal, Adenoviral DNA terminal protein. This
protein is covalently attached to the terminii of
replicating DNA in vivo.
Length = 548
Score = 45.4 bits (108), Expect = 1e-06
Identities = 23/34 (67%), Positives = 24/34 (70%)
Query: 20 EEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEE 53
E EEE+EEEEE EEEEEEEEEEE EEE
Sbjct: 300 PSPPEPEEEEEEEEEVPEEEEEEEEEEERTFEEE 333
Score = 44.3 bits (105), Expect = 2e-06
Identities = 23/38 (60%), Positives = 24/38 (63%)
Query: 21 EEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEELQA 58
E EE+EEEEEE EEEEEEEEEEE EEE
Sbjct: 300 PSPPEPEEEEEEEEEVPEEEEEEEEEEERTFEEEVRAT 337
Score = 44.3 bits (105), Expect = 3e-06
Identities = 22/34 (64%), Positives = 24/34 (70%)
Query: 17 EEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEE 50
E EEEEEE+EE EE+EEEEEEEE EEE
Sbjct: 300 PSPPEPEEEEEEEEEVPEEEEEEEEEEERTFEEE 333
Score = 43.9 bits (104), Expect = 4e-06
Identities = 22/34 (64%), Positives = 24/34 (70%)
Query: 16 EEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEE 49
E EEEEEEE+E EEE+EEEEEEE EEE
Sbjct: 300 PSPPEPEEEEEEEEEVPEEEEEEEEEEERTFEEE 333
Score = 43.1 bits (102), Expect = 6e-06
Identities = 21/34 (61%), Positives = 24/34 (70%)
Query: 11 EEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEE 44
+ EEEEEEEEE E+EEEEEE+EE EEE
Sbjct: 300 PSPPEPEEEEEEEEEVPEEEEEEEEEEERTFEEE 333
Score = 42.3 bits (100), Expect = 1e-05
Identities = 20/33 (60%), Positives = 24/33 (72%)
Query: 5 EEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDE 37
E +EEEE+EEE EEEEEEEE+EE E+E
Sbjct: 301 SPPEPEEEEEEEEEVPEEEEEEEEEEERTFEEE 333
Score = 41.6 bits (98), Expect = 2e-05
Identities = 23/34 (67%), Positives = 24/34 (70%)
Query: 14 EKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEE 47
E EEEEEEEEE EEEEE+EEEEE EEE
Sbjct: 300 PSPPEPEEEEEEEEEVPEEEEEEEEEEERTFEEE 333
Score = 41.6 bits (98), Expect = 2e-05
Identities = 23/39 (58%), Positives = 26/39 (66%)
Query: 3 KREEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEE 41
+R E E+EEEEEEE EEEE+EEEEEE EEE
Sbjct: 295 RRRPPPSPPEPEEEEEEEEEVPEEEEEEEEEEERTFEEE 333
Score = 41.6 bits (98), Expect = 2e-05
Identities = 22/40 (55%), Positives = 26/40 (65%)
Query: 3 KREEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEE 42
+R E +EEEEEEEE EEE+EEEEEE+ EEE
Sbjct: 294 RRRRPPPSPPEPEEEEEEEEEVPEEEEEEEEEEERTFEEE 333
Score = 37.7 bits (88), Expect = 6e-04
Identities = 18/29 (62%), Positives = 19/29 (65%)
Query: 31 EEEEEDEEEEEEEEEEEEEEEEEEELQAG 59
E EEEEEEEEE EEEEEEEE +
Sbjct: 300 PSPPEPEEEEEEEEEVPEEEEEEEEEEER 328
>gnl|CDD|217503 pfam03344, Daxx, Daxx Family. The Daxx protein (also known as the
Fas-binding protein) is thought to play a role in
apoptosis, but precise role played by Daxx remains to be
determined. Daxx forms a complex with Axin.
Length = 715
Score = 44.9 bits (106), Expect = 2e-06
Identities = 33/56 (58%), Positives = 42/56 (75%)
Query: 7 EEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEELQAGGHG 62
+E +EEE EEEEEEEEEEEEE++E EEE+ E+EEEEEE E + EEE++ G
Sbjct: 437 QESEEEESVEEEEEEEEEEEEEEQESEEEEGEDEEEEEEVEADNGSEEEMEGSSEG 492
Score = 44.1 bits (104), Expect = 3e-06
Identities = 37/59 (62%), Positives = 42/59 (71%)
Query: 1 MGKREEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEELQAG 59
M +E EEE+ EE+EEEEEEEEEEE+E EEEE EDEEEEEE E + EEE E G
Sbjct: 434 MASQESEEEESVEEEEEEEEEEEEEEQESEEEEGEDEEEEEEVEADNGSEEEMEGSSEG 492
Score = 43.7 bits (103), Expect = 4e-06
Identities = 34/60 (56%), Positives = 43/60 (71%)
Query: 3 KREEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEELQAGGHG 62
+E EE+E E+EEEEEEEEEEEE++ EEEE ++EEEEEE E + EEE E + G G
Sbjct: 435 ASQESEEEESVEEEEEEEEEEEEEEQESEEEEGEDEEEEEEVEADNGSEEEMEGSSEGDG 494
Score = 42.2 bits (99), Expect = 2e-05
Identities = 31/59 (52%), Positives = 39/59 (66%)
Query: 2 GKREEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEELQAGG 60
+ EE E+EEEE+EEEEEEE+E EEE+ E+EEE+EE E + EEE E E G
Sbjct: 439 SEEEESVEEEEEEEEEEEEEEQESEEEEGEDEEEEEEVEADNGSEEEMEGSSEGDGDGE 497
Score = 38.0 bits (88), Expect = 4e-04
Identities = 29/46 (63%), Positives = 35/46 (76%)
Query: 18 EEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEELQAGGHGI 63
+E EEEE EE+EEEEEE+EEEE+E EEEE E+EEEEE +G
Sbjct: 437 QESEEEESVEEEEEEEEEEEEEEQESEEEEGEDEEEEEEVEADNGS 482
Score = 38.0 bits (88), Expect = 4e-04
Identities = 28/51 (54%), Positives = 36/51 (70%)
Query: 5 EEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEE 55
EEEEE+EEE++ EEEE E+EEEEE+ E + EEE E E + + EE EE
Sbjct: 451 EEEEEEEEEQESEEEEGEDEEEEEEVEADNGSEEEMEGSSEGDGDGEEPEE 501
Score = 38.0 bits (88), Expect = 5e-04
Identities = 30/54 (55%), Positives = 38/54 (70%)
Query: 2 GKREEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEE 55
+ EEEEE+EEEE+E+E EEEE E+EE+EEE E D EEE E E + + EE
Sbjct: 445 VEEEEEEEEEEEEEEQESEEEEGEDEEEEEEVEADNGSEEEMEGSSEGDGDGEE 498
Score = 36.0 bits (83), Expect = 0.002
Identities = 24/71 (33%), Positives = 39/71 (54%)
Query: 5 EEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEELQAGGHGIA 64
EEEE++ EEE+ E+EEEEEE E ++ EEE + E + + EE EE+ E
Sbjct: 456 EEEEQESEEEEGEDEEEEEEVEADNGSEEEMEGSSEGDGDGEEPEEDAERRNSEMAGISR 515
Query: 65 ICQCKSAKIVT 75
+ + + + +
Sbjct: 516 MSEGQQPRGSS 526
Score = 34.9 bits (80), Expect = 0.005
Identities = 27/56 (48%), Positives = 33/56 (58%)
Query: 2 GKREEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEELQ 57
+ E +E EEEE EEEEEE+EEEEEEE+E EEEE E+EE +
Sbjct: 418 SSDPSKASSTSGESPSMASQESEEEESVEEEEEEEEEEEEEEQESEEEEGEDEEEE 473
Score = 33.0 bits (75), Expect = 0.022
Identities = 26/53 (49%), Positives = 31/53 (58%)
Query: 3 KREEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEE 55
R + K E +E EE+E EEE+EEEEEEEEEE+E EEEE E
Sbjct: 416 SRSSDPSKASSTSGESPSMASQESEEEESVEEEEEEEEEEEEEEQESEEEEGE 468
Score = 31.4 bits (71), Expect = 0.084
Identities = 23/58 (39%), Positives = 28/58 (48%)
Query: 3 KREEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEELQAGG 60
EEE E EEEE+E E + EEE E E + D EE EE+ E E + G
Sbjct: 462 SEEEEGEDEEEEEEVEADNGSEEEMEGSSEGDGDGEEPEEDAERRNSEMAGISRMSEG 519
Score = 29.1 bits (65), Expect = 0.56
Identities = 24/54 (44%), Positives = 30/54 (55%)
Query: 2 GKREEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEE 55
G + + E +E +EEE E+EEEEEEEEEEEE+E EEEE
Sbjct: 413 GTSSRSSDPSKASSTSGESPSMASQESEEEESVEEEEEEEEEEEEEEQESEEEE 466
>gnl|CDD|219900 pfam08553, VID27, VID27 cytoplasmic protein. This is a family of
fungal and plant proteins and contains many hypothetical
proteins. VID27 is a cytoplasmic protein that plays a
potential role in vacuolar protein degradation.
Length = 794
Score = 44.7 bits (106), Expect = 2e-06
Identities = 24/52 (46%), Positives = 34/52 (65%)
Query: 4 REEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEE 55
E E+ E +EEEE+EEEEEEEDE+E E ++EE EE++ E + E+
Sbjct: 378 ALEIEDANTERDDEEEEDEEEEEEEDEDEGPSKEHSDDEEFEEDDVESKYED 429
Score = 44.0 bits (104), Expect = 3e-06
Identities = 24/60 (40%), Positives = 39/60 (65%)
Query: 6 EEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEELQAGGHGIAI 65
E E E+++EEEE+EEEEEE++E+E +E ++EE EE++ E + E G +A+
Sbjct: 379 LEIEDANTERDDEEEEDEEEEEEEDEDEGPSKEHSDDEEFEEDDVESKYEDSDGNSSLAV 438
Score = 43.6 bits (103), Expect = 5e-06
Identities = 20/49 (40%), Positives = 32/49 (65%)
Query: 1 MGKREEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEE 49
+ E + EEEE EEEEEEE+E+E +E +++E EE++ E + E+
Sbjct: 381 IEDANTERDDEEEEDEEEEEEEDEDEGPSKEHSDDEEFEEDDVESKYED 429
Score = 42.8 bits (101), Expect = 8e-06
Identities = 21/49 (42%), Positives = 32/49 (65%)
Query: 7 EEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEE 55
+ E E+ E ++EEEEDEEEEEE++E+E +E ++EE EE+
Sbjct: 373 LDAFSALEIEDANTERDDEEEEDEEEEEEEDEDEGPSKEHSDDEEFEED 421
Score = 42.4 bits (100), Expect = 1e-05
Identities = 20/51 (39%), Positives = 32/51 (62%)
Query: 4 REEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEE 54
+++ + +E E++ + E ED E +DEEEE+EEEEEEE+E+E
Sbjct: 358 KQKWTKAKETEQDYILDAFSALEIEDANTERDDEEEEDEEEEEEEDEDEGP 408
Score = 42.4 bits (100), Expect = 1e-05
Identities = 21/48 (43%), Positives = 33/48 (68%)
Query: 6 EEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEE 53
E E+ E ++EEEE+EEEE+EE+E+E +E ++EE EE++ E
Sbjct: 377 SALEIEDANTERDDEEEEDEEEEEEEDEDEGPSKEHSDDEEFEEDDVE 424
Score = 42.0 bits (99), Expect = 1e-05
Identities = 19/48 (39%), Positives = 33/48 (68%)
Query: 7 EEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEE 54
+ E+ E ++EEEE+EEE+EEE+E++ +E ++EE EE++ E
Sbjct: 377 SALEIEDANTERDDEEEEDEEEEEEEDEDEGPSKEHSDDEEFEEDDVE 424
Score = 41.3 bits (97), Expect = 3e-05
Identities = 19/50 (38%), Positives = 32/50 (64%)
Query: 5 EEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEE 54
+ E E E ++EEEE+E+EEEEE+++E +E ++EE EE++
Sbjct: 373 LDAFSALEIEDANTERDDEEEEDEEEEEEEDEDEGPSKEHSDDEEFEEDD 422
Score = 39.7 bits (93), Expect = 9e-05
Identities = 20/56 (35%), Positives = 36/56 (64%)
Query: 5 EEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEELQAGG 60
E ++ + ++EEEE+EEEEE+E+E+E +E ++EE EE++ E + + G
Sbjct: 377 SALEIEDANTERDDEEEEDEEEEEEEDEDEGPSKEHSDDEEFEEDDVESKYEDSDG 432
Score = 38.6 bits (90), Expect = 3e-04
Identities = 20/51 (39%), Positives = 31/51 (60%), Gaps = 3/51 (5%)
Query: 8 EEKEEEEKEEEE---EEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEE 55
++K + KE E+ + E ++ E D+EEEE+EEEEEEE+E+E
Sbjct: 358 KQKWTKAKETEQDYILDAFSALEIEDANTERDDEEEEDEEEEEEEDEDEGP 408
Score = 37.8 bits (88), Expect = 5e-04
Identities = 19/53 (35%), Positives = 32/53 (60%)
Query: 3 KREEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEE 55
K + +E E++ + E E+ E ++EE+E+EEEEEEE+E+E +E
Sbjct: 360 KWTKAKETEQDYILDAFSALEIEDANTERDDEEEEDEEEEEEEDEDEGPSKEH 412
Score = 36.7 bits (85), Expect = 0.001
Identities = 21/56 (37%), Positives = 31/56 (55%), Gaps = 2/56 (3%)
Query: 9 EKEEEEKEEEEEEEEEEEEED--EEEEEEDEEEEEEEEEEEEEEEEEEELQAGGHG 62
E ++K + +E E++ D E ED E ++EEEE+EEEEEEE + G
Sbjct: 354 ETLNKQKWTKAKETEQDYILDAFSALEIEDANTERDDEEEEDEEEEEEEDEDEGPS 409
Score = 36.3 bits (84), Expect = 0.002
Identities = 18/51 (35%), Positives = 32/51 (62%)
Query: 5 EEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEE 55
E +++ + +E E++ + E E+ + E ++EEEE+EEEEEEE+E
Sbjct: 354 ETLNKQKWTKAKETEQDYILDAFSALEIEDANTERDDEEEEDEEEEEEEDE 404
Score = 27.0 bits (60), Expect = 2.3
Identities = 12/32 (37%), Positives = 20/32 (62%)
Query: 15 KEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEE 46
+ EE E E +EEED E++E + + +E+E
Sbjct: 63 RVYEEGEAELDEEEDGEDDELSVDSGQSKEDE 94
Score = 26.6 bits (59), Expect = 3.8
Identities = 13/30 (43%), Positives = 19/30 (63%)
Query: 21 EEEEEEEEDEEEEEEDEEEEEEEEEEEEEE 50
EE E E DEEE+ ED+E + + +E+E
Sbjct: 65 YEEGEAELDEEEDGEDDELSVDSGQSKEDE 94
Score = 26.3 bits (58), Expect = 5.1
Identities = 12/40 (30%), Positives = 23/40 (57%)
Query: 18 EEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEELQ 57
EE E E +EE++ E++E + + +E+E +E L+
Sbjct: 65 YEEGEAELDEEEDGEDDELSVDSGQSKEDEWVFLIDESLR 104
>gnl|CDD|185603 PTZ00415, PTZ00415, transmission-blocking target antigen s230;
Provisional.
Length = 2849
Score = 44.3 bits (104), Expect = 3e-06
Identities = 23/56 (41%), Positives = 38/56 (67%)
Query: 4 REEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEELQAG 59
R EE ++++E+E+ED+++EE+DEEEEEEEEE + ++E+EE + G
Sbjct: 138 RHLAEEDMSPRDNFVIDDDDEDEDEDDDDEEDDEEEEEEEEEIKGFDDEDEEDEGG 193
Score = 42.0 bits (98), Expect = 2e-05
Identities = 21/49 (42%), Positives = 38/49 (77%)
Query: 5 EEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEE 53
++++E E+E+ ++EE++EEEEEEE+E + +DE+EE+E E+ E+ E
Sbjct: 154 DDDDEDEDEDDDDEEDDEEEEEEEEEIKGFDDEDEEDEGGEDFTYEKSE 202
Score = 42.0 bits (98), Expect = 2e-05
Identities = 23/58 (39%), Positives = 40/58 (68%), Gaps = 4/58 (6%)
Query: 1 MGKREEEEEKEEEEKEEEEEEEEEEEEEDEEEEEE----DEEEEEEEEEEEEEEEEEE 54
M R+ +++E E+E++++EE++EE+EEEEEE D+E+EE+E E+ E+ E
Sbjct: 145 MSPRDNFVIDDDDEDEDEDDDDEEDDEEEEEEEEEIKGFDDEDEEDEGGEDFTYEKSE 202
Score = 41.6 bits (97), Expect = 3e-05
Identities = 19/53 (35%), Positives = 39/53 (73%)
Query: 8 EEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEELQAGG 60
E++ ++ ++++E+E++++++EED+EEEEEEEEE + ++E+E GG
Sbjct: 141 AEEDMSPRDNFVIDDDDEDEDEDDDDEEDDEEEEEEEEEIKGFDDEDEEDEGG 193
Score = 41.6 bits (97), Expect = 3e-05
Identities = 20/53 (37%), Positives = 37/53 (69%)
Query: 16 EEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEELQAGGHGIAICQC 68
++E+E+E++++EED+EEEEE+EEE + ++E+EE+E E+ + C
Sbjct: 156 DDEDEDEDDDDEEDDEEEEEEEEEIKGFDDEDEEDEGGEDFTYEKSEVDKTDC 208
Score = 41.6 bits (97), Expect = 3e-05
Identities = 22/50 (44%), Positives = 38/50 (76%)
Query: 5 EEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEE 54
++E+E E+++ EE++EEEEEEEEE + ++EDEE+E E+ E+ E ++
Sbjct: 156 DDEDEDEDDDDEEDDEEEEEEEEEIKGFDDEDEEDEGGEDFTYEKSEVDK 205
Score = 40.8 bits (95), Expect = 5e-05
Identities = 18/58 (31%), Positives = 39/58 (67%)
Query: 3 KREEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEELQAGG 60
+R +E+ + ++++E+EDE++++E+++EEEEEEEEE + ++E+ + G
Sbjct: 135 RRARHLAEEDMSPRDNFVIDDDDEDEDEDDDDEEDDEEEEEEEEEIKGFDDEDEEDEG 192
Score = 40.4 bits (94), Expect = 7e-05
Identities = 19/50 (38%), Positives = 40/50 (80%)
Query: 7 EEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEEL 56
+++ E+E++++++EE++EEEEE+EEE + ++E+EE+E E+ E+ E+
Sbjct: 154 DDDDEDEDEDDDDEEDDEEEEEEEEEIKGFDDEDEEDEGGEDFTYEKSEV 203
Score = 37.7 bits (87), Expect = 6e-04
Identities = 14/44 (31%), Positives = 30/44 (68%)
Query: 19 EEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEELQAGGHG 62
EE+ + ++++++E+E++++EE++EEEEEEE + G
Sbjct: 141 AEEDMSPRDNFVIDDDDEDEDEDDDDEEDDEEEEEEEEEIKGFD 184
Score = 31.6 bits (71), Expect = 0.074
Identities = 16/48 (33%), Positives = 34/48 (70%)
Query: 2 GKREEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEE 49
++++E+++EE+EEEEEE + ++EDEE+E ++ E+ E ++ +
Sbjct: 160 EDEDDDDEEDDEEEEEEEEEIKGFDDEDEEDEGGEDFTYEKSEVDKTD 207
>gnl|CDD|218556 pfam05327, RRN3, RNA polymerase I specific transcription initiation
factor RRN3. This family consists of several eukaryotic
proteins which are homologous to the yeast RRN3 protein.
RRN3 is one of the RRN genes specifically required for
the transcription of rDNA by RNA polymerase I (Pol I) in
Saccharomyces cerevisiae.
Length = 554
Score = 43.8 bits (104), Expect = 4e-06
Identities = 14/46 (30%), Positives = 29/46 (63%)
Query: 14 EKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEELQAG 59
E ++ ++EEEE DE++++ED+ + ++++EEE + E E
Sbjct: 221 ELDDIDDEEEERVLADEDDDDEDDMFDMDDDDEEESDPEVERTSTI 266
Score = 41.9 bits (99), Expect = 2e-05
Identities = 10/45 (22%), Positives = 29/45 (64%)
Query: 17 EEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEELQAGGH 61
++ ++EEEE +E+++++++ + ++++EEE + E E +
Sbjct: 223 DDIDDEEEERVLADEDDDDEDDMFDMDDDDEEESDPEVERTSTIK 267
Score = 40.0 bits (94), Expect = 7e-05
Identities = 14/46 (30%), Positives = 30/46 (65%)
Query: 5 EEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEE 50
E + E ++ + EEEE +E+++DE++ + ++++EEE + E E
Sbjct: 217 EIQNELDDIDDEEEERVLADEDDDDEDDMFDMDDDDEEESDPEVER 262
Score = 39.2 bits (92), Expect = 2e-04
Identities = 14/46 (30%), Positives = 31/46 (67%)
Query: 7 EEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEE 52
E + E ++ ++EEEE +E+D++E++ + ++++EEE + E E
Sbjct: 217 EIQNELDDIDDEEEERVLADEDDDDEDDMFDMDDDDEEESDPEVER 262
Score = 38.4 bits (90), Expect = 3e-04
Identities = 10/42 (23%), Positives = 29/42 (69%)
Query: 3 KREEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEE 44
+ ++ +++EEE +E++++E++ D ++++E+E + E E
Sbjct: 221 ELDDIDDEEEERVLADEDDDDEDDMFDMDDDDEEESDPEVER 262
Score = 38.1 bits (89), Expect = 4e-04
Identities = 12/44 (27%), Positives = 29/44 (65%)
Query: 14 EKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEELQ 57
E + E ++ ++EEEE +E+D++E++ + ++++EEE +
Sbjct: 217 EIQNELDDIDDEEEERVLADEDDDDEDDMFDMDDDDEEESDPEV 260
Score = 37.3 bits (87), Expect = 8e-04
Identities = 11/46 (23%), Positives = 30/46 (65%)
Query: 11 EEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEEL 56
+ +++EEE +E+++++++ + D+++EEE + E E +E+
Sbjct: 224 DIDDEEEERVLADEDDDDEDDMFDMDDDDEEESDPEVERTSTIKEV 269
>gnl|CDD|217783 pfam03896, TRAP_alpha, Translocon-associated protein (TRAP),
alpha subunit. The alpha-subunit of the TRAP complex
(TRAP alpha) is a single-spanning membrane protein of
the endoplasmic reticulum (ER) which is found in
proximity of nascent polypeptide chains translocating
across the membrane.
Length = 281
Score = 43.2 bits (102), Expect = 5e-06
Identities = 23/49 (46%), Positives = 30/49 (61%)
Query: 2 GKREEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEE 50
GK ++ E EE E++ +E+EEDE EEDE E EEEE+EE E
Sbjct: 24 GKGPFASAQDLTEDEEAEDDVVDEDEEDEAVVEEDENELTEEEEDEEGE 72
Score = 42.1 bits (99), Expect = 1e-05
Identities = 21/40 (52%), Positives = 30/40 (75%)
Query: 19 EEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEELQA 58
E+EE E++ DE+EE+E EE+E E EEEE+EE E++A
Sbjct: 36 EDEEAEDDVVDEDEEDEAVVEEDENELTEEEEDEEGEVKA 75
Score = 39.8 bits (93), Expect = 1e-04
Identities = 19/46 (41%), Positives = 29/46 (63%)
Query: 16 EEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEELQAGGH 61
++ E+EE E++ +E+EEDE EE+E E EEEE+EE +
Sbjct: 31 AQDLTEDEEAEDDVVDEDEEDEAVVEEDENELTEEEEDEEGEVKAS 76
Score = 39.4 bits (92), Expect = 1e-04
Identities = 20/42 (47%), Positives = 29/42 (69%)
Query: 12 EEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEE 53
++ E+EE E++ +EDEE+E EE+E E EEEE+EE E
Sbjct: 31 AQDLTEDEEAEDDVVDEDEEDEAVVEEDENELTEEEEDEEGE 72
>gnl|CDD|218734 pfam05758, Ycf1, Ycf1. The chloroplast genomes of most higher
plants contain two giant open reading frames designated
ycf1 and ycf2. Although the function of Ycf1 is unknown,
it is known to be an essential gene.
Length = 832
Score = 43.1 bits (102), Expect = 7e-06
Identities = 16/55 (29%), Positives = 29/55 (52%)
Query: 1 MGKREEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEE 55
+ + E EE+EEE E E E + + E+E +E+ EE+E+ ++ E+
Sbjct: 226 LKETSETEEREEETDVEIETTSETKGTKQEQEGSTEEDPSLFSEEKEDPDKTEDL 280
Score = 42.3 bits (100), Expect = 1e-05
Identities = 21/60 (35%), Positives = 37/60 (61%), Gaps = 8/60 (13%)
Query: 3 KREEEEEKEEE---EKEEEEEEEEEEEEED-----EEEEEEDEEEEEEEEEEEEEEEEEE 54
+REEE + E E E + ++E+E EED EE+E+ D+ E+ ++ E +E+++EE
Sbjct: 234 EREEETDVEIETTSETKGTKQEQEGSTEEDPSLFSEEKEDPDKTEDLDKLEILKEKKDEE 293
Score = 41.9 bits (99), Expect = 2e-05
Identities = 16/54 (29%), Positives = 30/54 (55%)
Query: 4 REEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEELQ 57
EE E+E + + E E + ++E E EED EE+E+ ++ E+ ++L+
Sbjct: 231 ETEEREEETDVEIETTSETKGTKQEQEGSTEEDPSLFSEEKEDPDKTEDLDKLE 284
Score = 41.9 bits (99), Expect = 2e-05
Identities = 18/48 (37%), Positives = 24/48 (50%)
Query: 10 KEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEELQ 57
KE E EE EEE + E E E + +E+E EE+ EE+E
Sbjct: 227 KETSETEEREEETDVEIETTSETKGTKQEQEGSTEEDPSLFSEEKEDP 274
Score = 41.5 bits (98), Expect = 2e-05
Identities = 18/54 (33%), Positives = 29/54 (53%)
Query: 3 KREEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEEL 56
K E E+ EEE + E E E + +E+E EE+ EE+E+ ++ E+L
Sbjct: 227 KETSETEEREEETDVEIETTSETKGTKQEQEGSTEEDPSLFSEEKEDPDKTEDL 280
Score = 41.5 bits (98), Expect = 3e-05
Identities = 16/57 (28%), Positives = 30/57 (52%)
Query: 1 MGKREEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEELQ 57
+ EEE E E E + ++E+E EE+ EE+E+ ++ E+ ++ E L+
Sbjct: 231 ETEEREEETDVEIETTSETKGTKQEQEGSTEEDPSLFSEEKEDPDKTEDLDKLEILK 287
Score = 41.1 bits (97), Expect = 3e-05
Identities = 17/51 (33%), Positives = 28/51 (54%)
Query: 3 KREEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEE 53
K +E E EE E+E + E E E + ++E+E EE+ EE+E+ +
Sbjct: 225 KLKETSETEEREEETDVEIETTSETKGTKQEQEGSTEEDPSLFSEEKEDPD 275
Score = 39.2 bits (92), Expect = 2e-04
Identities = 15/52 (28%), Positives = 28/52 (53%)
Query: 3 KREEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEE 54
K+ +E + EE +EE + E E E ++E++ EE+ EE+E+ +
Sbjct: 224 KKLKETSETEEREEETDVEIETTSETKGTKQEQEGSTEEDPSLFSEEKEDPD 275
Score = 38.4 bits (90), Expect = 3e-04
Identities = 16/42 (38%), Positives = 23/42 (54%)
Query: 15 KEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEEL 56
K +E E EE EEE + E E E + ++E+E EE+ L
Sbjct: 225 KLKETSETEEREEETDVEIETTSETKGTKQEQEGSTEEDPSL 266
Score = 37.7 bits (88), Expect = 5e-04
Identities = 16/46 (34%), Positives = 24/46 (52%)
Query: 10 KEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEE 55
K +E E EE EEE + E + E + ++E+E EE+ EE
Sbjct: 225 KLKETSETEEREEETDVEIETTSETKGTKQEQEGSTEEDPSLFSEE 270
Score = 37.7 bits (88), Expect = 5e-04
Identities = 18/51 (35%), Positives = 27/51 (52%), Gaps = 4/51 (7%)
Query: 10 KEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEE----EEEEEEL 56
K+ +E E EE EEE + E E E ++E+E EE+ EE+E+
Sbjct: 224 KKLKETSETEEREEETDVEIETTSETKGTKQEQEGSTEEDPSLFSEEKEDP 274
Score = 33.4 bits (77), Expect = 0.018
Identities = 11/45 (24%), Positives = 26/45 (57%)
Query: 1 MGKREEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEE 45
++E+E EE EE+E+ ++ E+ ++ + +E+++EE
Sbjct: 249 TKGTKQEQEGSTEEDPSLFSEEKEDPDKTEDLDKLEILKEKKDEE 293
Score = 32.7 bits (75), Expect = 0.028
Identities = 11/45 (24%), Positives = 27/45 (60%)
Query: 2 GKREEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEE 46
K ++E++ E++ EE+E+ + E+ ++ E +E+++EE
Sbjct: 249 TKGTKQEQEGSTEEDPSLFSEEKEDPDKTEDLDKLEILKEKKDEE 293
Score = 28.0 bits (63), Expect = 1.3
Identities = 10/34 (29%), Positives = 18/34 (52%)
Query: 25 EEEEDEEEEEEDEEEEEEEEEEEEEEEEEEELQA 58
+E + EE EE+ + E E E + ++E+E
Sbjct: 227 KETSETEEREEETDVEIETTSETKGTKQEQEGST 260
Score = 27.3 bits (61), Expect = 2.3
Identities = 8/32 (25%), Positives = 23/32 (71%)
Query: 1 MGKREEEEEKEEEEKEEEEEEEEEEEEEDEEE 32
+ K++E + + E++ ++EE++E+ + +E+E
Sbjct: 647 IEKKKEFKILDYTEEKTKKEEKKEKNKREEKE 678
Score = 26.9 bits (60), Expect = 2.8
Identities = 10/31 (32%), Positives = 23/31 (74%)
Query: 14 EKEEEEEEEEEEEEEDEEEEEEDEEEEEEEE 44
EK++E + + EE+ ++EE++++ + EE+E
Sbjct: 648 EKKKEFKILDYTEEKTKKEEKKEKNKREEKE 678
Score = 26.9 bits (60), Expect = 3.2
Identities = 10/31 (32%), Positives = 23/31 (74%)
Query: 21 EEEEEEEEDEEEEEEDEEEEEEEEEEEEEEE 51
E+++E + + EE+ ++EE++E+ + EE+E
Sbjct: 648 EKKKEFKILDYTEEKTKKEEKKEKNKREEKE 678
Score = 26.5 bits (59), Expect = 4.3
Identities = 10/31 (32%), Positives = 22/31 (70%)
Query: 7 EEEKEEEEKEEEEEEEEEEEEEDEEEEEEDE 37
E++KE + + EE+ ++EE++++ + EE E
Sbjct: 648 EKKKEFKILDYTEEKTKKEEKKEKNKREEKE 678
Score = 26.1 bits (58), Expect = 5.6
Identities = 10/31 (32%), Positives = 21/31 (67%)
Query: 4 REEEEEKEEEEKEEEEEEEEEEEEEDEEEEE 34
+++E K + EE+ ++EE++E+ EE+E
Sbjct: 648 EKKKEFKILDYTEEKTKKEEKKEKNKREEKE 678
Score = 26.1 bits (58), Expect = 6.1
Identities = 11/31 (35%), Positives = 22/31 (70%)
Query: 20 EEEEEEEEEDEEEEEEDEEEEEEEEEEEEEE 50
E+++E + D EE+ +EE++E+ + EE+E
Sbjct: 648 EKKKEFKILDYTEEKTKKEEKKEKNKREEKE 678
Score = 25.3 bits (56), Expect = 9.7
Identities = 11/31 (35%), Positives = 22/31 (70%)
Query: 9 EKEEEEKEEEEEEEEEEEEEDEEEEEEDEEE 39
EK++E K + EE+ ++EE +E+ + +E+E
Sbjct: 648 EKKKEFKILDYTEEKTKKEEKKEKNKREEKE 678
>gnl|CDD|237378 PRK13406, bchD, magnesium chelatase subunit D; Provisional.
Length = 584
Score = 43.1 bits (102), Expect = 7e-06
Identities = 13/40 (32%), Positives = 21/40 (52%)
Query: 11 EEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEE 50
+ EEE ED+++ EDEEE+++ E+ EE
Sbjct: 260 APPQPPEEEPPPPPPPPEDDDDPPEDEEEQDDAEDRALEE 299
Score = 41.5 bits (98), Expect = 2e-05
Identities = 12/41 (29%), Positives = 22/41 (53%)
Query: 16 EEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEEL 56
+ EEE E++D+ E+EEE+++ E+ EE+
Sbjct: 260 APPQPPEEEPPPPPPPPEDDDDPPEDEEEQDDAEDRALEEI 300
Score = 41.2 bits (97), Expect = 3e-05
Identities = 13/45 (28%), Positives = 24/45 (53%)
Query: 14 EKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEELQA 58
+ EEE E++++ E+EEE+++ E+ EE L+A
Sbjct: 260 APPQPPEEEPPPPPPPPEDDDDPPEDEEEQDDAEDRALEEIVLEA 304
Score = 41.2 bits (97), Expect = 3e-05
Identities = 11/39 (28%), Positives = 21/39 (53%)
Query: 5 EEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEE 43
+ +EE E++++ EDEEE+++ E+ EE
Sbjct: 261 PPQPPEEEPPPPPPPPEDDDDPPEDEEEQDDAEDRALEE 299
Score = 40.8 bits (96), Expect = 4e-05
Identities = 12/40 (30%), Positives = 21/40 (52%)
Query: 6 EEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEE 45
+ EEE E++++ E+EEE+D+ E+ EE
Sbjct: 260 APPQPPEEEPPPPPPPPEDDDDPPEDEEEQDDAEDRALEE 299
Score = 40.0 bits (94), Expect = 8e-05
Identities = 9/40 (22%), Positives = 21/40 (52%)
Query: 12 EEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEE 51
+ EEE +++++ ++EEE+++ E+ EE
Sbjct: 260 APPQPPEEEPPPPPPPPEDDDDPPEDEEEQDDAEDRALEE 299
Score = 40.0 bits (94), Expect = 8e-05
Identities = 11/40 (27%), Positives = 21/40 (52%)
Query: 5 EEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEE 44
+ EEE E++++ ++EEE++D E+ EE
Sbjct: 260 APPQPPEEEPPPPPPPPEDDDDPPEDEEEQDDAEDRALEE 299
Score = 39.6 bits (93), Expect = 1e-04
Identities = 11/40 (27%), Positives = 21/40 (52%)
Query: 13 EEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEE 52
+ EEE E++++ E+EEE+++ E+ EE
Sbjct: 260 APPQPPEEEPPPPPPPPEDDDDPPEDEEEQDDAEDRALEE 299
Score = 39.6 bits (93), Expect = 1e-04
Identities = 10/40 (25%), Positives = 20/40 (50%)
Query: 7 EEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEE 46
+ EE+ E++++ E+EEE ++ E+ EE
Sbjct: 260 APPQPPEEEPPPPPPPPEDDDDPPEDEEEQDDAEDRALEE 299
Score = 38.5 bits (90), Expect = 3e-04
Identities = 10/40 (25%), Positives = 21/40 (52%)
Query: 8 EEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEE 47
+ E+E E+++D E+EE++++ E+ EE
Sbjct: 260 APPQPPEEEPPPPPPPPEDDDDPPEDEEEQDDAEDRALEE 299
Score = 38.5 bits (90), Expect = 3e-04
Identities = 8/36 (22%), Positives = 16/36 (44%)
Query: 25 EEEEDEEEEEEDEEEEEEEEEEEEEEEEEEELQAGG 60
+ EEE E++++ E+EEE++
Sbjct: 260 APPQPPEEEPPPPPPPPEDDDDPPEDEEEQDDAEDR 295
Score = 38.5 bits (90), Expect = 3e-04
Identities = 10/40 (25%), Positives = 21/40 (52%)
Query: 9 EKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEE 48
+ +EE E++D+ E+E+E+++ E+ EE
Sbjct: 260 APPQPPEEEPPPPPPPPEDDDDPPEDEEEQDDAEDRALEE 299
Score = 33.8 bits (78), Expect = 0.013
Identities = 8/38 (21%), Positives = 14/38 (36%)
Query: 27 EEDEEEEEEDEEEEEEEEEEEEEEEEEEELQAGGHGIA 64
+ EEE E++++ E+EEE
Sbjct: 260 APPQPPEEEPPPPPPPPEDDDDPPEDEEEQDDAEDRAL 297
>gnl|CDD|237063 PRK12329, nusA, transcription elongation factor NusA; Provisional.
Length = 449
Score = 42.8 bits (101), Expect = 8e-06
Identities = 22/53 (41%), Positives = 30/53 (56%)
Query: 3 KREEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEE 55
+REEEE + E +E E E+ E EED E E+E E+E+E EE + E
Sbjct: 391 QREEEEALQREAEERLEAEQAERAEEDARLRELYPLPEDEFEDEDELEEAQPE 443
Score = 41.3 bits (97), Expect = 3e-05
Identities = 18/51 (35%), Positives = 28/51 (54%)
Query: 5 EEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEE 55
+ E E+ E ++ E EE+ E E++ E+E+E EE + EEEEE
Sbjct: 399 QREAEERLEAEQAERAEEDARLRELYPLPEDEFEDEDELEEAQPEEEEEAR 449
Score = 40.5 bits (95), Expect = 6e-05
Identities = 20/53 (37%), Positives = 29/53 (54%)
Query: 3 KREEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEE 55
+ EEE + E E+ E E+ E EE+ E E+E E+E+E EE + EE
Sbjct: 392 REEEEALQREAEERLEAEQAERAEEDARLRELYPLPEDEFEDEDELEEAQPEE 444
Score = 39.8 bits (93), Expect = 8e-05
Identities = 20/55 (36%), Positives = 28/55 (50%)
Query: 6 EEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEELQAGG 60
+ E+EE + E EE E E+ E EE+ E E+E E+E+E EE Q
Sbjct: 390 SQREEEEALQREAEERLEAEQAERAEEDARLRELYPLPEDEFEDEDELEEAQPEE 444
Score = 39.8 bits (93), Expect = 9e-05
Identities = 19/54 (35%), Positives = 28/54 (51%)
Query: 4 REEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEELQ 57
+ EE+E ++E EE E E+ E EE+ E E+E E+E+E EE
Sbjct: 389 ISQREEEEALQREAEERLEAEQAERAEEDARLRELYPLPEDEFEDEDELEEAQP 442
Score = 39.8 bits (93), Expect = 1e-04
Identities = 19/51 (37%), Positives = 27/51 (52%)
Query: 5 EEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEE 55
E ++EEEE + E EE E E+ E EE+ E E+E E+E+E
Sbjct: 387 ELISQREEEEALQREAEERLEAEQAERAEEDARLRELYPLPEDEFEDEDEL 437
Score = 39.8 bits (93), Expect = 1e-04
Identities = 21/50 (42%), Positives = 28/50 (56%)
Query: 4 REEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEE 53
RE EE E E+ E EE+ E E+E ++E+E EE + EEEEE
Sbjct: 400 REAEERLEAEQAERAEEDARLRELYPLPEDEFEDEDELEEAQPEEEEEAR 449
Score = 38.6 bits (90), Expect = 2e-04
Identities = 20/53 (37%), Positives = 27/53 (50%)
Query: 5 EEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEELQ 57
E + EEE+ + E EE E E E EED E E+E E+E+EL+
Sbjct: 386 AELISQREEEEALQREAEERLEAEQAERAEEDARLRELYPLPEDEFEDEDELE 438
Score = 36.3 bits (84), Expect = 0.001
Identities = 16/54 (29%), Positives = 25/54 (46%)
Query: 5 EEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEELQA 58
E+ + E + EEEE + E E+ E E+ E EE+ E E+E +
Sbjct: 380 AEDAKVAELISQREEEEALQREAEERLEAEQAERAEEDARLRELYPLPEDEFED 433
Score = 35.5 bits (82), Expect = 0.003
Identities = 17/51 (33%), Positives = 25/51 (49%)
Query: 5 EEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEE 55
E +++ E+ K E + EEEE + E EE E E+ E EE+ E
Sbjct: 374 AEYDQEAEDAKVAELISQREEEEALQREAEERLEAEQAERAEEDARLRELY 424
Score = 35.5 bits (82), Expect = 0.003
Identities = 16/55 (29%), Positives = 26/55 (47%)
Query: 4 REEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEELQA 58
+ E + E+EE + E EE E E+ E +E+ E E+E E+E +
Sbjct: 383 AKVAELISQREEEEALQREAEERLEAEQAERAEEDARLRELYPLPEDEFEDEDEL 437
Score = 35.1 bits (81), Expect = 0.004
Identities = 15/53 (28%), Positives = 26/53 (49%)
Query: 3 KREEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEE 55
+ E + EE+E + E EE E ++ E E++ E E+E E+E+
Sbjct: 383 AKVAELISQREEEEALQREAEERLEAEQAERAEEDARLRELYPLPEDEFEDED 435
Score = 34.8 bits (80), Expect = 0.005
Identities = 17/53 (32%), Positives = 26/53 (49%)
Query: 3 KREEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEE 55
K E ++E E+ + E + EEEE + E E+ E E+ E EE+ E
Sbjct: 371 KDSAEYDQEAEDAKVAELISQREEEEALQREAEERLEAEQAERAEEDARLREL 423
Score = 34.8 bits (80), Expect = 0.005
Identities = 17/46 (36%), Positives = 26/46 (56%)
Query: 3 KREEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEE 48
+R E E+ E E++ E E++ E+E+E EE + EEEEE
Sbjct: 404 ERLEAEQAERAEEDARLRELYPLPEDEFEDEDELEEAQPEEEEEAR 449
Score = 34.8 bits (80), Expect = 0.006
Identities = 18/48 (37%), Positives = 25/48 (52%)
Query: 3 KREEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEE 50
E E ++ E EE+ E ++E E+EDE EE + EEEEE
Sbjct: 402 AEERLEAEQAERAEEDARLRELYPLPEDEFEDEDELEEAQPEEEEEAR 449
Score = 34.0 bits (78), Expect = 0.009
Identities = 18/52 (34%), Positives = 25/52 (48%)
Query: 5 EEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEEL 56
E ++E E+ + E + EEEE E EE E E+ E EE+ E L
Sbjct: 375 EYDQEAEDAKVAELISQREEEEALQREAEERLEAEQAERAEEDARLRELYPL 426
Score = 34.0 bits (78), Expect = 0.009
Identities = 16/53 (30%), Positives = 26/53 (49%)
Query: 4 REEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEEL 56
++ E +E E + E + EEE+ + E +E E E+ E EE+ EL
Sbjct: 371 KDSAEYDQEAEDAKVAELISQREEEEALQREAEERLEAEQAERAEEDARLREL 423
Score = 30.5 bits (69), Expect = 0.16
Identities = 15/48 (31%), Positives = 26/48 (54%)
Query: 11 EEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEELQA 58
E +++ E+ + E + +EEE + E EE E E+ E EE+ L+
Sbjct: 375 EYDQEAEDAKVAELISQREEEEALQREAEERLEAEQAERAEEDARLRE 422
Score = 29.8 bits (67), Expect = 0.29
Identities = 14/40 (35%), Positives = 23/40 (57%)
Query: 1 MGKREEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEE 40
+R EE+ + E E+E E+E+E +E + EE+EE
Sbjct: 410 QAERAEEDARLRELYPLPEDEFEDEDELEEAQPEEEEEAR 449
Score = 28.2 bits (63), Expect = 0.94
Identities = 15/44 (34%), Positives = 24/44 (54%)
Query: 15 KEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEELQA 58
K+ E ++E E+ + E + EEEE + E EE E E+ +A
Sbjct: 371 KDSAEYDQEAEDAKVAELISQREEEEALQREAEERLEAEQAERA 414
Score = 26.3 bits (58), Expect = 4.7
Identities = 15/39 (38%), Positives = 20/39 (51%)
Query: 21 EEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEELQAG 59
E ++E ED + E + EEEE + E EE E QA
Sbjct: 374 AEYDQEAEDAKVAELISQREEEEALQREAEERLEAEQAE 412
>gnl|CDD|237284 PRK13108, PRK13108, prolipoprotein diacylglyceryl transferase;
Reviewed.
Length = 460
Score = 42.7 bits (100), Expect = 1e-05
Identities = 10/51 (19%), Positives = 17/51 (33%)
Query: 4 REEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEE 54
RE+ + + + + E EE E +E E E E+
Sbjct: 373 REQPGDLAGQAPAAHQVDAEAASAAPEEPAALASEAHDETEPEVPEKAAPI 423
Score = 41.5 bits (97), Expect = 2e-05
Identities = 10/54 (18%), Positives = 17/54 (31%)
Query: 6 EEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEELQAG 59
E E+ + + + + E EE E +E E E E+
Sbjct: 372 EREQPGDLAGQAPAAHQVDAEAASAAPEEPAALASEAHDETEPEVPEKAAPIPD 425
Score = 41.1 bits (96), Expect = 4e-05
Identities = 10/55 (18%), Positives = 20/55 (36%)
Query: 4 REEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEELQA 58
EE + + E+E+ + + + + E EE E +E E +
Sbjct: 362 AVEETSEADIEREQPGDLAGQAPAAHQVDAEAASAAPEEPAALASEAHDETEPEV 416
Score = 40.0 bits (93), Expect = 8e-05
Identities = 10/55 (18%), Positives = 19/55 (34%)
Query: 5 EEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEELQAG 59
E + E+E+ + + + + +E E +E E E E A
Sbjct: 368 EADIEREQPGDLAGQAPAAHQVDAEAASAAPEEPAALASEAHDETEPEVPEKAAP 422
Score = 39.2 bits (91), Expect = 2e-04
Identities = 13/59 (22%), Positives = 20/59 (33%), Gaps = 2/59 (3%)
Query: 6 EEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEE--EEEELQAGGHG 62
+ + + E EE E DE E E E+ + + +EL G G
Sbjct: 380 AGQAPAAHQVDAEAASAAPEEPAALASEAHDETEPEVPEKAAPIPDPAKPDELAVAGPG 438
Score = 38.8 bits (90), Expect = 2e-04
Identities = 9/55 (16%), Positives = 15/55 (27%)
Query: 5 EEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEELQAG 59
E+ + + + E EE E +E E E E+
Sbjct: 373 REQPGDLAGQAPAAHQVDAEAASAAPEEPAALASEAHDETEPEVPEKAAPIPDPA 427
Score = 35.3 bits (81), Expect = 0.003
Identities = 10/51 (19%), Positives = 16/51 (31%)
Query: 5 EEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEE 55
+ + E EE E DE E E E+ + + +E
Sbjct: 386 AHQVDAEAASAAPEEPAALASEAHDETEPEVPEKAAPIPDPAKPDELAVAG 436
Score = 33.0 bits (75), Expect = 0.019
Identities = 10/51 (19%), Positives = 17/51 (33%)
Query: 4 REEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEE 54
R+ E EE E + E E+ + + + + E EE
Sbjct: 355 RDGESTPAVEETSEADIEREQPGDLAGQAPAAHQVDAEAASAAPEEPAALA 405
Score = 28.4 bits (63), Expect = 0.78
Identities = 9/47 (19%), Positives = 17/47 (36%)
Query: 6 EEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEE 52
EE E +E E E E+ + + +E ++ E +
Sbjct: 399 EEPAALASEAHDETEPEVPEKAAPIPDPAKPDELAVAGPGDDPAEPD 445
Score = 27.6 bits (61), Expect = 1.4
Identities = 10/47 (21%), Positives = 17/47 (36%)
Query: 5 EEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEE 51
EE E +E E E E+ + + DE ++ E +
Sbjct: 399 EEPAALASEAHDETEPEVPEKAAPIPDPAKPDELAVAGPGDDPAEPD 445
>gnl|CDD|217829 pfam03985, Paf1, Paf1. Members of this family are components of
the RNA polymerase II associated Paf1 complex. The Paf1
complex functions during the elongation phase of
transcription in conjunction with Spt4-Spt5 and
Spt16-Pob3i.
Length = 431
Score = 42.0 bits (99), Expect = 1e-05
Identities = 22/60 (36%), Positives = 32/60 (53%)
Query: 1 MGKREEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEELQAGG 60
KR + + E+ +E+E+EEEE+ DE EEEE E+ EEE + E+ E G
Sbjct: 355 RDKRRARLDPIDFEEVDEDEDEEEEQRSDEHEEEEGEDSEEEGSQSREDGSSESSSDVGS 414
Score = 41.3 bits (97), Expect = 3e-05
Identities = 18/56 (32%), Positives = 31/56 (55%)
Query: 3 KREEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEELQA 58
E+E+E+EE+ +E EEEE E+ EE+ + ED E + + E + ++ A
Sbjct: 370 VDEDEDEEEEQRSDEHEEEEGEDSEEEGSQSREDGSSESSSDVGSDSESKADKESA 425
Score = 40.9 bits (96), Expect = 3e-05
Identities = 20/51 (39%), Positives = 28/51 (54%)
Query: 5 EEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEE 55
EE +E E+EE+E+ +E EEEE ED EEE E+ E + + E
Sbjct: 368 EEVDEDEDEEEEQRSDEHEEEEGEDSEEEGSQSREDGSSESSSDVGSDSES 418
Score = 40.5 bits (95), Expect = 6e-05
Identities = 17/54 (31%), Positives = 30/54 (55%)
Query: 1 MGKREEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEE 54
+ E +E+++EEE++ +E EEEE E+ EEE + E+ E + + E
Sbjct: 365 IDFEEVDEDEDEEEEQRSDEHEEEEGEDSEEEGSQSREDGSSESSSDVGSDSES 418
Score = 40.1 bits (94), Expect = 7e-05
Identities = 18/51 (35%), Positives = 29/51 (56%)
Query: 5 EEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEE 55
+ EE E+E++EEE+ +E EEEE E+ EEE + E+ E + +
Sbjct: 366 DFEEVDEDEDEEEEQRSDEHEEEEGEDSEEEGSQSREDGSSESSSDVGSDS 416
Score = 39.7 bits (93), Expect = 9e-05
Identities = 18/54 (33%), Positives = 32/54 (59%)
Query: 5 EEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEELQA 58
EE +++E+E+EE+ +E EEEE ++ EEE + E+ E + + E +A
Sbjct: 367 FEEVDEDEDEEEEQRSDEHEEEEGEDSEEEGSQSREDGSSESSSDVGSDSESKA 420
Score = 39.3 bits (92), Expect = 1e-04
Identities = 15/54 (27%), Positives = 32/54 (59%)
Query: 2 GKREEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEE 55
+ +E+E++EEE++ +E EEEE E+ E+E + ++ E + + E + +
Sbjct: 368 EEVDEDEDEEEEQRSDEHEEEEGEDSEEEGSQSREDGSSESSSDVGSDSESKAD 421
Score = 38.6 bits (90), Expect = 3e-04
Identities = 20/53 (37%), Positives = 31/53 (58%)
Query: 3 KREEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEE 55
K + +K + + EE +E+E++EEE+ DE EEEE E+ EEE + E
Sbjct: 350 KESKMRDKRRARLDPIDFEEVDEDEDEEEEQRSDEHEEEEGEDSEEEGSQSRE 402
Score = 37.4 bits (87), Expect = 5e-04
Identities = 21/56 (37%), Positives = 33/56 (58%)
Query: 7 EEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEELQAGGHG 62
+E + +K + + EE DE+E+EE+E+ +E EEEE E+ EEE Q+ G
Sbjct: 349 TKESKMRDKRRARLDPIDFEEVDEDEDEEEEQRSDEHEEEEGEDSEEEGSQSREDG 404
Score = 37.4 bits (87), Expect = 7e-04
Identities = 18/57 (31%), Positives = 34/57 (59%)
Query: 5 EEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEELQAGGH 61
+E + +++ + + EE +E+++EEEE+ +E EEEE E+ EEE + + G
Sbjct: 350 KESKMRDKRRARLDPIDFEEVDEDEDEEEEQRSDEHEEEEGEDSEEEGSQSREDGSS 406
Score = 37.0 bits (86), Expect = 8e-04
Identities = 15/51 (29%), Positives = 28/51 (54%)
Query: 5 EEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEE 55
EEEE++ +E +EEE E+ EEE + E+ + + + E + ++E
Sbjct: 376 EEEEQRSDEHEEEEGEDSEEEGSQSREDGSSESSSDVGSDSESKADKESAS 426
Score = 36.6 bits (85), Expect = 0.001
Identities = 13/51 (25%), Positives = 26/51 (50%)
Query: 5 EEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEE 55
E+ ++ EEE+ E+ EEE + ED E + + E + ++E + +
Sbjct: 379 EQRSDEHEEEEGEDSEEEGSQSREDGSSESSSDVGSDSESKADKESASDSD 429
Score = 36.6 bits (85), Expect = 0.001
Identities = 19/61 (31%), Positives = 32/61 (52%)
Query: 3 KREEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEELQAGGHG 62
R++ + + EE +E+E+EEEE +E E+EE E+ EEE + E+ + G
Sbjct: 354 MRDKRRARLDPIDFEEVDEDEDEEEEQRSDEHEEEEGEDSEEEGSQSREDGSSESSSDVG 413
Query: 63 I 63
Sbjct: 414 S 414
Score = 36.3 bits (84), Expect = 0.001
Identities = 15/56 (26%), Positives = 28/56 (50%)
Query: 4 REEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEELQAG 59
EEE+ +E E+EE E+ EEE + E+ E + + E + ++E + +
Sbjct: 376 EEEEQRSDEHEEEEGEDSEEEGSQSREDGSSESSSDVGSDSESKADKESASDSDSE 431
Score = 36.3 bits (84), Expect = 0.002
Identities = 19/51 (37%), Positives = 31/51 (60%)
Query: 5 EEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEE 55
+E + ++ + + + EE +EDE+EEEE +E EEEE E+ EEE +
Sbjct: 349 TKESKMRDKRRARLDPIDFEEVDEDEDEEEEQRSDEHEEEEGEDSEEEGSQ 399
Score = 34.7 bits (80), Expect = 0.005
Identities = 13/53 (24%), Positives = 26/53 (49%)
Query: 3 KREEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEE 55
+ EE+ E EE+E E+ EEE + ++ E + + E + ++E +
Sbjct: 376 EEEEQRSDEHEEEEGEDSEEEGSQSREDGSSESSSDVGSDSESKADKESASDS 428
Score = 33.9 bits (78), Expect = 0.009
Identities = 12/54 (22%), Positives = 27/54 (50%)
Query: 2 GKREEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEE 55
++ +E +EEE ++ EEE + E+ E + + E + ++E + + E
Sbjct: 378 EEQRSDEHEEEEGEDSEEEGSQSREDGSSESSSDVGSDSESKADKESASDSDSE 431
Score = 32.8 bits (75), Expect = 0.024
Identities = 17/52 (32%), Positives = 30/52 (57%)
Query: 4 REEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEE 55
R ++ + + + + EE +E+E+E+EE+ +E EEEE E+ EEE
Sbjct: 345 RNPSTKESKMRDKRRARLDPIDFEEVDEDEDEEEEQRSDEHEEEEGEDSEEE 396
Score = 27.8 bits (62), Expect = 1.2
Identities = 9/46 (19%), Positives = 20/46 (43%)
Query: 1 MGKREEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEE 46
+ E+ E+E + E+ E + + E + D+E + + E
Sbjct: 386 EEEEGEDSEEEGSQSREDGSSESSSDVGSDSESKADKESASDSDSE 431
>gnl|CDD|212055 cd11486, SLC5sbd_SGLT1, Na(+)/glucose cotransporter SGLT1;solute
binding domain. Human SGLT1 (hSGLT1) is a
high-affinity/low-capacity glucose transporter, which
can also transport galactose. In the transport
mechanism, two Na+ ions first bind to the extracellular
side of the transporter and induce a conformational
change in the glucose binding site. This results in an
increased affinity for glucose. A second conformational
change in the transporter follows, bringing the Na+ and
glucose binding sites to the inner surface of the
membrane. Glucose is then released, followed by the Na+
ions. In the process, hSGLT1 is also able to transport
water and urea and may be a major pathway for transport
of these across the intestinal brush-border membrane.
hSGLT1 is encoded by the SLC5A1 gene and expressed
mostly in the intestine, but also in the trachea,
kidney, heart, brain, testis, and prostate. The
WHO/UNICEF oral rehydration solution (ORS) for the
treatment of secretory diarrhea contains salt and
glucose. The glucose, along with sodium ions, is
transported by hSGLT1 and water is either co-transported
along with these or follows by osmosis. Mutations in
SGLT1 are associated with intestinal glucose galactose
malabsorption (GGM). Up-regulation of intestinal SGLT1
may protect against enteric infections. SGLT1 is
expressed in colorectal, head and neck, and prostate
tumors. Epidermal growth factor receptor (EGFR)
functions in cell survival by stabilizing SGLT1, and
thereby maintaining intracellular glucose levels. SGLT1
is predicted to have 14 membrane-spanning regions. This
subgroup belongs to the solute carrier 5
(SLC5)transporter family.
Length = 635
Score = 41.8 bits (98), Expect = 2e-05
Identities = 15/65 (23%), Positives = 30/65 (46%), Gaps = 14/65 (21%)
Query: 4 REEEEEKEEEEKEEEEEEEEEEEEEDEEEEEE--------------DEEEEEEEEEEEEE 49
R EE+ + + ++ E+E+E E E +EE ++ D+ + + EEEE
Sbjct: 538 RNSTEERIDLDADDWTEDEDENEMETDEERKKPGCCRKAYNWFCGFDQGKAPKLTEEEEA 597
Query: 50 EEEEE 54
+ +
Sbjct: 598 ALKMK 602
Score = 35.2 bits (81), Expect = 0.004
Identities = 9/29 (31%), Positives = 18/29 (62%)
Query: 28 EDEEEEEEDEEEEEEEEEEEEEEEEEEEL 56
E+ + + D+ E+E+E E E +EE ++
Sbjct: 542 EERIDLDADDWTEDEDENEMETDEERKKP 570
Score = 34.8 bits (80), Expect = 0.005
Identities = 15/69 (21%), Positives = 29/69 (42%), Gaps = 15/69 (21%)
Query: 3 KREEEEEKEEEEKEEEEEEEEEEEEE---------------DEEEEEEDEEEEEEEEEEE 47
+R + + + E E+E E E +EE + D+ + + EEEE + +
Sbjct: 543 ERIDLDADDWTEDEDENEMETDEERKKPGCCRKAYNWFCGFDQGKAPKLTEEEEAALKMK 602
Query: 48 EEEEEEEEL 56
+ E+ L
Sbjct: 603 MTDTSEKPL 611
Score = 34.5 bits (79), Expect = 0.008
Identities = 11/30 (36%), Positives = 18/30 (60%)
Query: 30 EEEEEEDEEEEEEEEEEEEEEEEEEELQAG 59
EE + D ++ E+E+E E E +EE + G
Sbjct: 542 EERIDLDADDWTEDEDENEMETDEERKKPG 571
Score = 32.5 bits (74), Expect = 0.037
Identities = 9/27 (33%), Positives = 16/27 (59%)
Query: 29 DEEEEEEDEEEEEEEEEEEEEEEEEEE 55
+ EE D + ++ E+E+E E E +E
Sbjct: 539 NSTEERIDLDADDWTEDEDENEMETDE 565
>gnl|CDD|218333 pfam04931, DNA_pol_phi, DNA polymerase phi. This family includes
the fifth essential DNA polymerase in yeast EC:2.7.7.7.
Pol5p is localised exclusively to the nucleolus and
binds near or at the enhancer region of rRNA-encoding
DNA repeating units.
Length = 784
Score = 41.8 bits (98), Expect = 2e-05
Identities = 21/53 (39%), Positives = 34/53 (64%)
Query: 2 GKREEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEE 54
E EEE E++ +E +++E+E E ED E E E + E+ EE+E+E++ E E
Sbjct: 643 QLFEGEEEDEDDLEETDDDEDECEAIEDSESESESDGEDGEEDEQEDDAEANE 695
Score = 40.6 bits (95), Expect = 5e-05
Identities = 19/52 (36%), Positives = 35/52 (67%)
Query: 1 MGKREEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEE 52
+ + EEE+E + EE +++E+E E E+ + E E + E+ EE+E+E++ E E
Sbjct: 644 LFEGEEEDEDDLEETDDDEDECEAIEDSESESESDGEDGEEDEQEDDAEANE 695
Score = 40.6 bits (95), Expect = 6e-05
Identities = 19/56 (33%), Positives = 38/56 (67%)
Query: 3 KREEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEELQA 58
K ++ E EE++E++ EE +++E++ E E+ E E E + E+ EE+E+E++ +A
Sbjct: 638 KSRHQQLFEGEEEDEDDLEETDDDEDECEAIEDSESESESDGEDGEEDEQEDDAEA 693
Score = 40.2 bits (94), Expect = 6e-05
Identities = 20/53 (37%), Positives = 35/53 (66%)
Query: 3 KREEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEE 55
+ ++ E E+E+E++ EE +++EDE E ED E E E + E+ EE+E+E+
Sbjct: 637 NKSRHQQLFEGEEEDEDDLEETDDDEDECEAIEDSESESESDGEDGEEDEQED 689
Score = 39.5 bits (92), Expect = 1e-04
Identities = 18/53 (33%), Positives = 36/53 (67%)
Query: 3 KREEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEE 55
+ E EE++E++ EE +++E+E E ++ E E + + E+ EE+E+E++ E E
Sbjct: 643 QLFEGEEEDEDDLEETDDDEDECEAIEDSESESESDGEDGEEDEQEDDAEANE 695
Score = 36.8 bits (85), Expect = 0.001
Identities = 21/61 (34%), Positives = 35/61 (57%), Gaps = 4/61 (6%)
Query: 2 GKREEEEEKEEEEKEEEEEEE----EEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEELQ 57
G+ E+E++ EE + +E+E E E E E D E+ EEDE+E++ E E ++ +
Sbjct: 647 GEEEDEDDLEETDDDEDECEAIEDSESESESDGEDGEEDEQEDDAEANEGVVPIDKAVRR 706
Query: 58 A 58
A
Sbjct: 707 A 707
Score = 35.6 bits (82), Expect = 0.003
Identities = 14/55 (25%), Positives = 27/55 (49%)
Query: 5 EEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEELQAG 59
+E+E + E+ E E E + E+ EEDE+E++ + E ++ + L
Sbjct: 661 DEDECEAIEDSESESESDGEDGEEDEQEDDAEANEGVVPIDKAVRRALPKVLNLP 715
Score = 35.6 bits (82), Expect = 0.003
Identities = 18/49 (36%), Positives = 31/49 (63%)
Query: 7 EEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEE 55
E + ++ E EEE+E++ EE +++E+E E E+ E E E + E+ EE
Sbjct: 636 ENKSRHQQLFEGEEEDEDDLEETDDDEDECEAIEDSESESESDGEDGEE 684
Score = 35.2 bits (81), Expect = 0.005
Identities = 20/55 (36%), Positives = 36/55 (65%)
Query: 3 KREEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEELQ 57
K +E + + ++ E EEE+E++ EE D++E+E + E+ E E E + E+ EE+ Q
Sbjct: 633 KADENKSRHQQLFEGEEEDEDDLEETDDDEDECEAIEDSESESESDGEDGEEDEQ 687
Score = 34.8 bits (80), Expect = 0.006
Identities = 16/60 (26%), Positives = 29/60 (48%)
Query: 6 EEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEELQAGGHGIAI 65
+++E E E E+ E E E + E+ EE+E+ED+ E E ++ + A+
Sbjct: 659 DDDEDECEAIEDSESESESDGEDGEEDEQEDDAEANEGVVPIDKAVRRALPKVLNLPDAL 718
Score = 32.5 bits (74), Expect = 0.030
Identities = 18/50 (36%), Positives = 31/50 (62%)
Query: 10 KEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEELQAG 59
K +E K ++ E EEE++++ EE D++E+E E E+ E E E + + G
Sbjct: 633 KADENKSRHQQLFEGEEEDEDDLEETDDDEDECEAIEDSESESESDGEDG 682
Score = 27.5 bits (61), Expect = 1.8
Identities = 14/56 (25%), Positives = 25/56 (44%)
Query: 5 EEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEELQAGG 60
E E+ E E + + E+ EE+E+E+D E E ++ + + GG
Sbjct: 666 EAIEDSESESESDGEDGEEDEQEDDAEANEGVVPIDKAVRRALPKVLNLPDALDGG 721
>gnl|CDD|221175 pfam11705, RNA_pol_3_Rpc31, DNA-directed RNA polymerase III subunit
Rpc31. RNA polymerase III contains seventeen subunits
in yeasts and in human cells. Twelve of these are akin
to RNA polymerase I or II and the other five are RNA pol
III-specific, and form the functionally distinct groups
(i) Rpc31-Rpc34-Rpc82, and (ii) Rpc37-Rpc53. Rpc31,
Rpc34 and Rpc82 form a cluster of enzyme-specific
subunits that contribute to transcription initiation in
S.cerevisiae and H.sapiens. There is evidence that these
subunits are anchored at or near the N-terminal Zn-fold
of Rpc1, itself prolonged by a highly conserved but RNA
polymerase III-specific domain.
Length = 221
Score = 41.3 bits (97), Expect = 2e-05
Identities = 24/51 (47%), Positives = 41/51 (80%)
Query: 5 EEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEE 55
EEEE+ +E+ E++ +E E E+ +EE+E+DEEEEEEEEEE+E+ +++++
Sbjct: 144 EEEEDIDEKLSMLEKKLKELEAEDVDEEDEKDEEEEEEEEEEDEDFDDDDD 194
Score = 40.9 bits (96), Expect = 3e-05
Identities = 20/47 (42%), Positives = 38/47 (80%)
Query: 5 EEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEE 51
E+ E++ KE E E+ +EE+E+DEEEEEE+EEE+E+ ++++++++
Sbjct: 151 EKLSMLEKKLKELEAEDVDEEDEKDEEEEEEEEEEDEDFDDDDDDDD 197
Score = 40.5 bits (95), Expect = 5e-05
Identities = 18/51 (35%), Positives = 41/51 (80%)
Query: 5 EEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEE 55
E+ +EK +++ +E E E+ +E++E++EE+EEEEEEE+E+ ++++++++
Sbjct: 147 EDIDEKLSMLEKKLKELEAEDVDEEDEKDEEEEEEEEEEDEDFDDDDDDDD 197
Score = 40.1 bits (94), Expect = 5e-05
Identities = 22/53 (41%), Positives = 40/53 (75%)
Query: 3 KREEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEE 55
EEE+ E+ E++ +E E E+ DEE+E+++EEEEEEEEE+E+ ++++++
Sbjct: 143 TEEEEDIDEKLSMLEKKLKELEAEDVDEEDEKDEEEEEEEEEEDEDFDDDDDD 195
Score = 40.1 bits (94), Expect = 7e-05
Identities = 18/51 (35%), Positives = 41/51 (80%)
Query: 5 EEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEE 55
EE+ +++ E++ +E E E+ ++E+E++E+EEEEEEEE+E+ +++++++
Sbjct: 146 EEDIDEKLSMLEKKLKELEAEDVDEEDEKDEEEEEEEEEEDEDFDDDDDDD 196
Score = 39.7 bits (93), Expect = 7e-05
Identities = 24/52 (46%), Positives = 38/52 (73%)
Query: 4 REEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEE 55
EEEE +E+ E++ +E E ED +EE+E +EEEEEEEEEE+E+ ++++
Sbjct: 142 FTEEEEDIDEKLSMLEKKLKELEAEDVDEEDEKDEEEEEEEEEEDEDFDDDD 193
Score = 38.2 bits (89), Expect = 3e-04
Identities = 17/47 (36%), Positives = 37/47 (78%)
Query: 2 GKREEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEE 48
K E+K +E + E+ +EE+E++EE+EEEEEE++E+ ++++++++
Sbjct: 151 EKLSMLEKKLKELEAEDVDEEDEKDEEEEEEEEEEDEDFDDDDDDDD 197
Score = 37.0 bits (86), Expect = 6e-04
Identities = 18/47 (38%), Positives = 36/47 (76%)
Query: 1 MGKREEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEE 47
E++ +E E E+ +EE+E++EEE+EEEEEEDE+ ++++++++
Sbjct: 151 EKLSMLEKKLKELEAEDVDEEDEKDEEEEEEEEEEDEDFDDDDDDDD 197
Score = 36.7 bits (85), Expect = 9e-04
Identities = 25/55 (45%), Positives = 38/55 (69%)
Query: 2 GKREEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEEL 56
KR+ EEEE +E+ E++ ++ E E+ DEE+E++EEEEEEEEEE+E+
Sbjct: 135 FKRKVGLFTEEEEDIDEKLSMLEKKLKELEAEDVDEEDEKDEEEEEEEEEEDEDF 189
Score = 34.7 bits (80), Expect = 0.004
Identities = 21/54 (38%), Positives = 37/54 (68%)
Query: 2 GKREEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEE 55
K E+EE+ E+ E++ +E + E+ +E++E++EEEEEEEEEE+E+ +
Sbjct: 137 RKVGLFTEEEEDIDEKLSMLEKKLKELEAEDVDEEDEKDEEEEEEEEEEDEDFD 190
Score = 31.6 bits (72), Expect = 0.063
Identities = 15/32 (46%), Positives = 29/32 (90%)
Query: 5 EEEEEKEEEEKEEEEEEEEEEEEEDEEEEEED 36
+ +EE E++E+EEEEEEEE+E+ +D++++++D
Sbjct: 167 DVDEEDEKDEEEEEEEEEEDEDFDDDDDDDDD 198
Score = 30.5 bits (69), Expect = 0.13
Identities = 14/32 (43%), Positives = 30/32 (93%)
Query: 5 EEEEEKEEEEKEEEEEEEEEEEEEDEEEEEED 36
+EE++++EE+EEEEEEE+E+ ++D++++++D
Sbjct: 168 VDEEDEKDEEEEEEEEEEDEDFDDDDDDDDDD 199
>gnl|CDD|215601 PLN03142, PLN03142, Probable chromatin-remodeling complex ATPase
chain; Provisional.
Length = 1033
Score = 40.9 bits (96), Expect = 4e-05
Identities = 20/58 (34%), Positives = 32/58 (55%)
Query: 7 EEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEELQAGGHGIA 64
EEE+ + EEE+EEE E + D++E E+E+E+EE++EE I+
Sbjct: 1 EEEQVNTQANEEEDEEELEAVARSAGSDSDDDEVPAEDEDEDEEDDEEAESPAKAEIS 58
Score = 39.8 bits (93), Expect = 9e-05
Identities = 19/65 (29%), Positives = 35/65 (53%)
Query: 9 EKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEELQAGGHGIAICQC 68
E+E+ + EEE+EEE E D +++E E+E+E+EE++E I +
Sbjct: 1 EEEQVNTQANEEEDEEELEAVARSAGSDSDDDEVPAEDEDEDEEDDEEAESPAKAEISKR 60
Query: 69 KSAKI 73
+ A++
Sbjct: 61 EKARL 65
Score = 38.6 bits (90), Expect = 3e-04
Identities = 19/51 (37%), Positives = 31/51 (60%)
Query: 5 EEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEE 55
EEE+ + +EE+EEE E + ++DE E+E+E+EE++EE E
Sbjct: 1 EEEQVNTQANEEEDEEELEAVARSAGSDSDDDEVPAEDEDEDEEDDEEAES 51
Score = 36.7 bits (85), Expect = 0.001
Identities = 17/49 (34%), Positives = 27/49 (55%)
Query: 5 EEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEE 53
+ + EEE EEE E D +++E E+E+E+EE++EE E
Sbjct: 4 QVNTQANEEEDEEELEAVARSAGSDSDDDEVPAEDEDEDEEDDEEAESP 52
Score = 36.7 bits (85), Expect = 0.001
Identities = 16/51 (31%), Positives = 30/51 (58%)
Query: 5 EEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEE 55
EE+ + E+E+EEE E + ++++ E+E+E+EE++EE E
Sbjct: 2 EEQVNTQANEEEDEEELEAVARSAGSDSDDDEVPAEDEDEDEEDDEEAESP 52
Score = 34.4 bits (79), Expect = 0.008
Identities = 17/54 (31%), Positives = 29/54 (53%)
Query: 1 MGKREEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEE 54
+ E+E+EE+ E + +D+E EDE+E+EE++EE E + E
Sbjct: 3 EQVNTQANEEEDEEELEAVARSAGSDSDDDEVPAEDEDEDEEDDEEAESPAKAE 56
Score = 31.7 bits (72), Expect = 0.075
Identities = 14/54 (25%), Positives = 31/54 (57%)
Query: 2 GKREEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEE 55
+ E+EEE E + + +++E ++E+E+E+++EE E + E + E+
Sbjct: 10 NEEEDEEELEAVARSAGSDSDDDEVPAEDEDEDEEDDEEAESPAKAEISKREKA 63
Score = 29.0 bits (65), Expect = 0.60
Identities = 13/47 (27%), Positives = 24/47 (51%)
Query: 14 EKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEELQAGG 60
EKE + ++ + ++ + E EE + EE+EE+E+L G
Sbjct: 777 EKEVRYLMQAHQKGQLKDTIDVAEPEEPGDPLTAEEQEEKEQLLEEG 823
Score = 26.7 bits (59), Expect = 3.3
Identities = 11/46 (23%), Positives = 25/46 (54%)
Query: 6 EEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEE 51
E+E + + ++ + ++ + + EE + EE+EE+E+ EE
Sbjct: 777 EKEVRYLMQAHQKGQLKDTIDVAEPEEPGDPLTAEEQEEKEQLLEE 822
Score = 26.7 bits (59), Expect = 3.7
Identities = 13/56 (23%), Positives = 34/56 (60%)
Query: 2 GKREEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEELQ 57
+ + ++E E+E+E+EE++EE E + + + E+ +E ++++++E+Q
Sbjct: 22 ARSAGSDSDDDEVPAEDEDEDEEDDEEAESPAKAEISKREKARLKELKKQKKQEIQ 77
Score = 26.7 bits (59), Expect = 3.9
Identities = 14/46 (30%), Positives = 24/46 (52%)
Query: 9 EKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEE 54
EKE + ++ + ++ D E EE + EE+EE+E+ EE
Sbjct: 777 EKEVRYLMQAHQKGQLKDTIDVAEPEEPGDPLTAEEQEEKEQLLEE 822
Score = 26.3 bits (58), Expect = 5.0
Identities = 12/46 (26%), Positives = 24/46 (52%)
Query: 5 EEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEE 50
E+E + ++ + ++ + E EE + EE+EE+E+ EE
Sbjct: 777 EKEVRYLMQAHQKGQLKDTIDVAEPEEPGDPLTAEEQEEKEQLLEE 822
Score = 26.3 bits (58), Expect = 5.4
Identities = 13/46 (28%), Positives = 24/46 (52%)
Query: 7 EEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEE 52
E+E + ++ + ++ + E EE D EE+EE+E+ EE
Sbjct: 777 EKEVRYLMQAHQKGQLKDTIDVAEPEEPGDPLTAEEQEEKEQLLEE 822
>gnl|CDD|240329 PTZ00248, PTZ00248, eukaryotic translation initiation factor 2
subunit 1; Provisional.
Length = 319
Score = 40.4 bits (95), Expect = 5e-05
Identities = 25/46 (54%), Positives = 37/46 (80%)
Query: 10 KEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEE 55
+EE+ EE E+ EEEEEED+ E EDE+EE+E+EEEEE+++E ++
Sbjct: 274 GDEEDLEELLEKAEEEEEEDDYSESEDEDEEDEDEEEEEDDDEGDK 319
Score = 40.4 bits (95), Expect = 6e-05
Identities = 25/48 (52%), Positives = 38/48 (79%)
Query: 1 MGKREEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEE 48
+G EE+ E+ E+ EEEEEE++ E EDE+EE+EDEEEEE+++E ++
Sbjct: 272 VGGDEEDLEELLEKAEEEEEEDDYSESEDEDEEDEDEEEEEDDDEGDK 319
Score = 39.6 bits (93), Expect = 1e-04
Identities = 21/46 (45%), Positives = 36/46 (78%)
Query: 6 EEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEE 51
+EE EE E+ EEEEEE++ + E+E+E++E+EEEEE+++E ++
Sbjct: 274 GDEEDLEELLEKAEEEEEEDDYSESEDEDEEDEDEEEEEDDDEGDK 319
Score = 39.3 bits (92), Expect = 1e-04
Identities = 23/46 (50%), Positives = 37/46 (80%)
Query: 5 EEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEE 50
+EE+ EE ++ EEEEEE++ E E+E+EEDE+EEEEE+++E ++
Sbjct: 274 GDEEDLEELLEKAEEEEEEDDYSESEDEDEEDEDEEEEEDDDEGDK 319
Score = 38.5 bits (90), Expect = 2e-04
Identities = 22/46 (47%), Positives = 36/46 (78%)
Query: 9 EKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEE 54
EE+ +E E+ EEEEEE+D E E+++EE+E+EEEEE+++E ++
Sbjct: 274 GDEEDLEELLEKAEEEEEEDDYSESEDEDEEDEDEEEEEDDDEGDK 319
Score = 38.5 bits (90), Expect = 3e-04
Identities = 24/53 (45%), Positives = 38/53 (71%)
Query: 3 KREEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEE 55
K E E +EE EE E+ EEEEE+++ E ++E+EE+E+EEEEE+++E +
Sbjct: 266 KGEPEVVGGDEEDLEELLEKAEEEEEEDDYSESEDEDEEDEDEEEEEDDDEGD 318
Score = 37.3 bits (87), Expect = 5e-04
Identities = 22/46 (47%), Positives = 37/46 (80%)
Query: 8 EEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEE 53
++E+ E+ E+ EEEEEE++ E E+EDEE+E+EEEEE+++E ++
Sbjct: 274 GDEEDLEELLEKAEEEEEEDDYSESEDEDEEDEDEEEEEDDDEGDK 319
Score = 36.9 bits (86), Expect = 8e-04
Identities = 21/46 (45%), Positives = 36/46 (78%)
Query: 12 EEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEELQ 57
+E++ EE E+ EEEE+E++ E E+E+EE+E+EEEEE+++E +
Sbjct: 274 GDEEDLEELLEKAEEEEEEDDYSESEDEDEEDEDEEEEEDDDEGDK 319
Score = 36.9 bits (86), Expect = 9e-04
Identities = 21/46 (45%), Positives = 37/46 (80%)
Query: 7 EEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEE 52
+E++ EE E+ EEEEEE++ E E+E++E+E+EEEEE+++E ++
Sbjct: 274 GDEEDLEELLEKAEEEEEEDDYSESEDEDEEDEDEEEEEDDDEGDK 319
>gnl|CDD|220759 pfam10446, DUF2457, Protein of unknown function (DUF2457). This
is a family of uncharacterized proteins.
Length = 449
Score = 40.4 bits (94), Expect = 5e-05
Identities = 17/53 (32%), Positives = 44/53 (83%)
Query: 3 KREEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEE 55
K+E K +E EEE EEE+++EED++++++++E++++++++E++E+E+++
Sbjct: 33 KKENAIRKLGKEAEEEAMEEEDDDEEDDDDDDDEDEDDDDDDDDEDDEDEDDD 85
Score = 39.2 bits (91), Expect = 1e-04
Identities = 17/52 (32%), Positives = 43/52 (82%)
Query: 2 GKREEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEE 53
R+ +E EEE EEE+++EE+++++D+E+E++D+++++E++E+E++++
Sbjct: 37 AIRKLGKEAEEEAMEEEDDDEEDDDDDDDEDEDDDDDDDDEDDEDEDDDDST 88
Score = 37.7 bits (87), Expect = 5e-04
Identities = 15/57 (26%), Positives = 43/57 (75%)
Query: 3 KREEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEELQAG 59
+E EEE EEE ++EE+++++++E++++++++D+E++E+E++++ ++ G
Sbjct: 42 GKEAEEEAMEEEDDDEEDDDDDDDEDEDDDDDDDDEDDEDEDDDDSTLHDDSSADDG 98
Score = 36.5 bits (84), Expect = 0.002
Identities = 17/48 (35%), Positives = 41/48 (85%)
Query: 1 MGKREEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEE 48
+GK EEE EEE+ +EE+++++++E+ED++++++DE++E+E++++
Sbjct: 41 LGKEAEEEAMEEEDDDEEDDDDDDDEDEDDDDDDDDEDDEDEDDDDST 88
Score = 36.1 bits (83), Expect = 0.002
Identities = 16/48 (33%), Positives = 38/48 (79%)
Query: 9 EKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEEL 56
E + +E EEE EEE+D+EE+++D+++E+E++++++++E++E+
Sbjct: 35 ENAIRKLGKEAEEEAMEEEDDDEEDDDDDDDEDEDDDDDDDDEDDEDE 82
Score = 35.7 bits (82), Expect = 0.002
Identities = 16/43 (37%), Positives = 37/43 (86%)
Query: 15 KEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEELQ 57
K +E EEE EEED++EE++D++++E+E++++++++E++E +
Sbjct: 40 KLGKEAEEEAMEEEDDDEEDDDDDDDEDEDDDDDDDDEDDEDE 82
Score = 34.6 bits (79), Expect = 0.007
Identities = 14/47 (29%), Positives = 38/47 (80%)
Query: 10 KEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEEL 56
KE ++ +E EEE EE++++EE+D+++++E+E++++++++E++
Sbjct: 34 KENAIRKLGKEAEEEAMEEEDDDEEDDDDDDDEDEDDDDDDDDEDDE 80
Score = 30.7 bits (69), Expect = 0.16
Identities = 13/55 (23%), Positives = 43/55 (78%)
Query: 5 EEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEELQAG 59
EE++++E+++ +++E+E+++++++DE++E+ED+++ ++ ++ E + +AG
Sbjct: 52 EEDDDEEDDDDDDDEDEDDDDDDDDEDDEDEDDDDSTLHDDSSADDGNETDNEAG 106
Score = 30.3 bits (68), Expect = 0.17
Identities = 13/51 (25%), Positives = 39/51 (76%)
Query: 5 EEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEE 55
EEE+ +EE+ +++++E+E+++++D++E++EDE++++ ++ ++ E
Sbjct: 50 MEEEDDDEEDDDDDDDEDEDDDDDDDDEDDEDEDDDDSTLHDDSSADDGNE 100
Score = 30.0 bits (67), Expect = 0.23
Identities = 11/51 (21%), Positives = 39/51 (76%)
Query: 4 REEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEE 54
EEE++ EE++ ++++E+E++++++D+E++E++++++ ++ ++ E
Sbjct: 50 MEEEDDDEEDDDDDDDEDEDDDDDDDDEDDEDEDDDDSTLHDDSSADDGNE 100
Score = 29.2 bits (65), Expect = 0.53
Identities = 12/55 (21%), Positives = 40/55 (72%)
Query: 1 MGKREEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEE 55
M + +++EE ++++ +E+E++++++++ED+E+E++D+ ++ ++ E + E
Sbjct: 50 MEEEDDDEEDDDDDDDEDEDDDDDDDDEDDEDEDDDDSTLHDDSSADDGNETDNE 104
>gnl|CDD|221775 pfam12794, MscS_TM, Mechanosensitive ion channel inner membrane
domain 1. The small mechanosensitive channel, MscS, is
a part of the turgor-driven solute efflux system that
protects bacteria from lysis in the event of osmotic
shock. The MscS protein alone is sufficient to form a
functional mechanosensitive channel gated directly by
tension in the lipid bilayer. The MscS proteins are
heptamers of three transmembrane subunits with seven
converging M3 domains, and this domain is one of the
inner membrane domains.
Length = 339
Score = 39.5 bits (93), Expect = 1e-04
Identities = 13/30 (43%), Positives = 15/30 (50%), Gaps = 3/30 (10%)
Query: 3 KREE---EEEKEEEEKEEEEEEEEEEEEED 29
KR E + +EEEE E E EE E D
Sbjct: 266 KRAEILAQRAEEEEESSEGAAETIEEPELD 295
Score = 39.1 bits (92), Expect = 1e-04
Identities = 10/29 (34%), Positives = 13/29 (44%)
Query: 14 EKEEEEEEEEEEEEEDEEEEEEDEEEEEE 42
K E + EEEE+ E + EE E
Sbjct: 265 AKRAEILAQRAEEEEESSEGAAETIEEPE 293
Score = 36.8 bits (86), Expect = 0.001
Identities = 12/29 (41%), Positives = 13/29 (44%)
Query: 9 EKEEEEKEEEEEEEEEEEEEDEEEEEEDE 37
K E + EEEEE E E EE E
Sbjct: 265 AKRAEILAQRAEEEEESSEGAAETIEEPE 293
Score = 36.8 bits (86), Expect = 0.001
Identities = 12/27 (44%), Positives = 13/27 (48%)
Query: 30 EEEEEEDEEEEEEEEEEEEEEEEEEEL 56
E + EEEEE E E EE EL
Sbjct: 268 AEILAQRAEEEEESSEGAAETIEEPEL 294
Score = 36.0 bits (84), Expect = 0.002
Identities = 11/29 (37%), Positives = 13/29 (44%)
Query: 20 EEEEEEEEEDEEEEEEDEEEEEEEEEEEE 48
+ E + EEEEE E E EE E
Sbjct: 265 AKRAEILAQRAEEEEESSEGAAETIEEPE 293
Score = 35.3 bits (82), Expect = 0.003
Identities = 11/30 (36%), Positives = 14/30 (46%)
Query: 4 REEEEEKEEEEKEEEEEEEEEEEEEDEEEE 33
+ + E + EEEEE E E EE E
Sbjct: 264 KAKRAEILAQRAEEEEESSEGAAETIEEPE 293
Score = 34.5 bits (80), Expect = 0.005
Identities = 11/30 (36%), Positives = 14/30 (46%)
Query: 15 KEEEEEEEEEEEEEDEEEEEEDEEEEEEEE 44
K + E + EE+EE E E EE E
Sbjct: 264 KAKRAEILAQRAEEEEESSEGAAETIEEPE 293
Score = 33.0 bits (76), Expect = 0.018
Identities = 9/30 (30%), Positives = 14/30 (46%)
Query: 10 KEEEEKEEEEEEEEEEEEEDEEEEEEDEEE 39
K + + + EEEEE + E +E E
Sbjct: 264 KAKRAEILAQRAEEEEESSEGAAETIEEPE 293
Score = 33.0 bits (76), Expect = 0.019
Identities = 10/29 (34%), Positives = 13/29 (44%)
Query: 22 EEEEEEEDEEEEEEDEEEEEEEEEEEEEE 50
+ E + EEE+E E E EE E
Sbjct: 265 AKRAEILAQRAEEEEESSEGAAETIEEPE 293
Score = 32.6 bits (75), Expect = 0.029
Identities = 10/29 (34%), Positives = 12/29 (41%)
Query: 21 EEEEEEEEDEEEEEEDEEEEEEEEEEEEE 49
+ E EEEE+ E E EE E
Sbjct: 265 AKRAEILAQRAEEEEESSEGAAETIEEPE 293
>gnl|CDD|215774 pfam00183, HSP90, Hsp90 protein.
Length = 529
Score = 39.0 bits (91), Expect = 2e-04
Identities = 25/40 (62%), Positives = 33/40 (82%)
Query: 12 EEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEE 51
E EKE +EEEEEE+EE +EEEE+ ++EEE +EEEE+EE
Sbjct: 30 EVEKEVPDEEEEEEKEEKKEEEEKTTDKEEEVDEEEEKEE 69
Score = 38.2 bits (89), Expect = 4e-04
Identities = 24/42 (57%), Positives = 36/42 (85%)
Query: 14 EKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEE 55
EKE E+E +EEEEE++EE++E+EE+ ++EEE +EEEE+EE
Sbjct: 28 EKEVEKEVPDEEEEEEKEEKKEEEEKTTDKEEEVDEEEEKEE 69
Score = 37.4 bits (87), Expect = 6e-04
Identities = 23/42 (54%), Positives = 36/42 (85%)
Query: 5 EEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEE 46
E+E EKE ++EEEEE+EE++EEE++ ++E+E +EEEE+EE
Sbjct: 28 EKEVEKEVPDEEEEEEKEEKKEEEEKTTDKEEEVDEEEEKEE 69
Score = 34.7 bits (80), Expect = 0.005
Identities = 22/55 (40%), Positives = 42/55 (76%)
Query: 3 KREEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEELQ 57
K +EE+EEE++E++EEEE+ ++E+E +EEE++EE++++ ++ +E E EL
Sbjct: 33 KEVPDEEEEEEKEEKKEEEEKTTDKEEEVDEEEEKEEKKKKTKKVKETTTEWELL 87
Score = 27.0 bits (60), Expect = 2.5
Identities = 17/31 (54%), Positives = 21/31 (67%)
Query: 11 EEEEKEEEEEEEEEEEEEDEEEEEEDEEEEE 41
E+EE EEE+EE E E E EE+ ED + EE
Sbjct: 497 EDEEVEEEDEEAEVETTEPAEEDAEDSKMEE 527
Score = 26.3 bits (58), Expect = 4.8
Identities = 16/32 (50%), Positives = 22/32 (68%)
Query: 17 EEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEE 48
+E+EE EEE+EE E E E EE+ E+ + EE
Sbjct: 496 DEDEEVEEEDEEAEVETTEPAEEDAEDSKMEE 527
Score = 25.5 bits (56), Expect = 8.5
Identities = 17/32 (53%), Positives = 22/32 (68%)
Query: 20 EEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEE 51
+E+EE EEEDEE E E E EE+ E+ + EE
Sbjct: 496 DEDEEVEEEDEEAEVETTEPAEEDAEDSKMEE 527
Score = 25.5 bits (56), Expect = 9.7
Identities = 15/32 (46%), Positives = 22/32 (68%)
Query: 19 EEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEE 50
+E+EE EEE++E E E E EE+ E+ + EE
Sbjct: 496 DEDEEVEEEDEEAEVETTEPAEEDAEDSKMEE 527
>gnl|CDD|217393 pfam03154, Atrophin-1, Atrophin-1 family. Atrophin-1 is the
protein product of the dentatorubral-pallidoluysian
atrophy (DRPLA) gene. DRPLA OMIM:125370 is a progressive
neurodegenerative disorder. It is caused by the
expansion of a CAG repeat in the DRPLA gene on
chromosome 12p. This results in an extended
polyglutamine region in atrophin-1, that is thought to
confer toxicity to the protein, possibly through
altering its interactions with other proteins. The
expansion of a CAG repeat is also the underlying defect
in six other neurodegenerative disorders, including
Huntington's disease. One interaction of expanded
polyglutamine repeats that is thought to be pathogenic
is that with the short glutamine repeat in the
transcriptional coactivator CREB binding protein, CBP.
This interaction draws CBP away from its usual nuclear
location to the expanded polyglutamine repeat protein
aggregates that are characteristic of the polyglutamine
neurodegenerative disorders. This interferes with
CBP-mediated transcription and causes cytotoxicity.
Length = 979
Score = 38.9 bits (90), Expect = 2e-04
Identities = 23/64 (35%), Positives = 30/64 (46%), Gaps = 5/64 (7%)
Query: 3 KREEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEE-----EEEEEEEEEEEELQ 57
KREE EK + E E++ EE E E+E E+E E + E E E E E +L
Sbjct: 580 KREEAVEKAKREAEQKAREEREREKEKEKEREREREREAERAAKASSSSHESRMSEPQLS 639
Query: 58 AGGH 61
H
Sbjct: 640 GPAH 643
Score = 35.4 bits (81), Expect = 0.004
Identities = 19/49 (38%), Positives = 29/49 (59%)
Query: 10 KEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEELQA 58
K +++EE E+ + E E+ EE E E+E+E+E E E E E E +A
Sbjct: 576 KLAKKREEAVEKAKREAEQKAREEREREKEKEKEREREREREAERAAKA 624
Score = 34.3 bits (78), Expect = 0.009
Identities = 17/41 (41%), Positives = 25/41 (60%)
Query: 9 EKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEE 49
+K EE E+ + E E++ E+ E E+E E+E E E E E E
Sbjct: 579 KKREEAVEKAKREAEQKAREEREREKEKEKEREREREREAE 619
>gnl|CDD|237047 PRK12298, obgE, GTPase CgtA; Reviewed.
Length = 390
Score = 38.7 bits (91), Expect = 2e-04
Identities = 14/49 (28%), Positives = 31/49 (63%)
Query: 3 KREEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEE 51
+ E EE + E+ E ++ E+ E+ EEE++D+ +++ +E+++E E
Sbjct: 337 REEAEEAEAPEKVEFMWDDYHREQLEEVEEEDDDDWDDDWDEDDDEGVE 385
Score = 38.3 bits (90), Expect = 3e-04
Identities = 18/49 (36%), Positives = 32/49 (65%)
Query: 4 REEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEE 52
REE EE E EK E ++ E+ +E EEE+D++ +++ +E+++E E
Sbjct: 337 REEAEEAEAPEKVEFMWDDYHREQLEEVEEEDDDDWDDDWDEDDDEGVE 385
Score = 37.5 bits (88), Expect = 6e-04
Identities = 15/49 (30%), Positives = 31/49 (63%)
Query: 7 EEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEE 55
EE EE +E E E+ E +D E+ +E EEE++++ +++ +E+++
Sbjct: 333 EENPREEAEEAEAPEKVEFMWDDYHREQLEEVEEEDDDDWDDDWDEDDD 381
Score = 36.8 bits (86), Expect = 0.001
Identities = 16/53 (30%), Positives = 32/53 (60%), Gaps = 3/53 (5%)
Query: 5 EEEEEKEEEEKEEEEEEE---EEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEE 54
EE +E EE E E+ E ++ E EE EE+++++ +++ +E+++E E
Sbjct: 333 EENPREEAEEAEAPEKVEFMWDDYHREQLEEVEEEDDDDWDDDWDEDDDEGVE 385
Score = 36.8 bits (86), Expect = 0.001
Identities = 15/54 (27%), Positives = 32/54 (59%)
Query: 4 REEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEELQ 57
EE E+ E ++ E ++ E+ EE EEED+++ +++ +E+++E E +
Sbjct: 336 PREEAEEAEAPEKVEFMWDDYHREQLEEVEEEDDDDWDDDWDEDDDEGVEVIYK 389
Score = 36.4 bits (85), Expect = 0.001
Identities = 14/53 (26%), Positives = 32/53 (60%)
Query: 3 KREEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEE 55
+ EE EE E E+ E ++ ++ EE E+E++++ +++ +E+++E E
Sbjct: 333 EENPREEAEEAEAPEKVEFMWDDYHREQLEEVEEEDDDDWDDDWDEDDDEGVE 385
>gnl|CDD|235640 PRK05901, PRK05901, RNA polymerase sigma factor; Provisional.
Length = 509
Score = 38.8 bits (91), Expect = 2e-04
Identities = 9/58 (15%), Positives = 43/58 (74%)
Query: 3 KREEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEELQAGG 60
+ ++ ++++ +++ ++++ ++++D+E+++ED+++++ ++E+EE++E +E +
Sbjct: 126 VLNQADDDDDDDDDDDLDDDDIDDDDDDEDDDEDDDDDDVDDEDEEKKEAKELEKLSD 183
Score = 38.8 bits (91), Expect = 2e-04
Identities = 10/54 (18%), Positives = 42/54 (77%)
Query: 3 KREEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEEL 56
+++++ + ++ + ++++++E+++ED+++++ D+E+EE++E +E E+ +++
Sbjct: 133 DDDDDDDDDLDDDDIDDDDDDEDDDEDDDDDDVDDEDEEKKEAKELEKLSDDDD 186
Score = 38.4 bits (90), Expect = 3e-04
Identities = 9/52 (17%), Positives = 38/52 (73%)
Query: 5 EEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEEL 56
+ +++ +++ ++E+++E++++++ ++E+EE +E +E E+ ++++ +E
Sbjct: 141 DLDDDDIDDDDDDEDDDEDDDDDDVDDEDEEKKEAKELEKLSDDDDFVWDED 192
Score = 38.4 bits (90), Expect = 3e-04
Identities = 10/54 (18%), Positives = 42/54 (77%)
Query: 5 EEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEELQA 58
++++ ++++ E+++E++++++ +DE+EE+++ +E E+ ++++ +E++ +A
Sbjct: 143 DDDDIDDDDDDEDDDEDDDDDDVDDEDEEKKEAKELEKLSDDDDFVWDEDDSEA 196
Score = 38.1 bits (89), Expect = 4e-04
Identities = 11/54 (20%), Positives = 39/54 (72%)
Query: 5 EEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEELQA 58
++++ +E++ E++++++ ++E+E+++E +E E+ ++++ +E++ E QA
Sbjct: 147 IDDDDDDEDDDEDDDDDDVDDEDEEKKEAKELEKLSDDDDFVWDEDDSEALRQA 200
Score = 38.1 bits (89), Expect = 4e-04
Identities = 8/51 (15%), Positives = 43/51 (84%)
Query: 5 EEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEE 55
+++++ ++++ ++++++E+++E++D+++ ++++EE++E +E E+ ++++
Sbjct: 137 DDDDDLDDDDIDDDDDDEDDDEDDDDDDVDDEDEEKKEAKELEKLSDDDDF 187
Score = 38.1 bits (89), Expect = 4e-04
Identities = 9/52 (17%), Positives = 39/52 (75%)
Query: 5 EEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEEL 56
+ +++ ++E+ +E++++++ ++E++E++E ++ E+ ++++ +E++ E L
Sbjct: 146 DIDDDDDDEDDDEDDDDDDVDDEDEEKKEAKELEKLSDDDDFVWDEDDSEAL 197
Score = 37.7 bits (88), Expect = 5e-04
Identities = 10/53 (18%), Positives = 42/53 (79%)
Query: 5 EEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEELQ 57
+++++ +++ ++++++E+++E+D++++ +DE+EE++E +E E+ ++++
Sbjct: 136 DDDDDDLDDDDIDDDDDDEDDDEDDDDDDVDDEDEEKKEAKELEKLSDDDDFV 188
Score = 37.3 bits (87), Expect = 8e-04
Identities = 9/76 (11%), Positives = 46/76 (60%)
Query: 3 KREEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEELQAGGHG 62
+++++ ++ + ++ ++++++E++++++++++ ++E+EE++E +E E+ ++
Sbjct: 132 DDDDDDDDDDLDDDDIDDDDDDEDDDEDDDDDDVDDEDEEKKEAKELEKLSDDDDFVWDE 191
Query: 63 IAICQCKSAKIVTTKT 78
+ A+ T
Sbjct: 192 DDSEALRQARKDAKLT 207
Score = 36.1 bits (84), Expect = 0.002
Identities = 9/51 (17%), Positives = 35/51 (68%)
Query: 2 GKREEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEE 52
+++++++++E +++++ ++E+EE+ E +E E ++++ +E++ E
Sbjct: 146 DIDDDDDDEDDDEDDDDDDVDDEDEEKKEAKELEKLSDDDDFVWDEDDSEA 196
Score = 35.0 bits (81), Expect = 0.004
Identities = 8/52 (15%), Positives = 42/52 (80%)
Query: 5 EEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEEL 56
+ + ++++ ++++++ ++++ +D++++E+D+E++++++ ++E+EE++E
Sbjct: 125 DVLNQADDDDDDDDDDDLDDDDIDDDDDDEDDDEDDDDDDVDDEDEEKKEAK 176
Score = 34.2 bits (79), Expect = 0.009
Identities = 7/49 (14%), Positives = 40/49 (81%)
Query: 9 EKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEELQ 57
+ + ++++++++++ ++D+ ++++D+E+++E++++++ ++E+EE +
Sbjct: 125 DVLNQADDDDDDDDDDDLDDDDIDDDDDDEDDDEDDDDDDVDDEDEEKK 173
Score = 33.8 bits (78), Expect = 0.013
Identities = 8/51 (15%), Positives = 42/51 (82%)
Query: 8 EEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEELQA 58
+ + + +++++++++ +++D +++++DE+++E++++++ ++E+EE+ +A
Sbjct: 125 DVLNQADDDDDDDDDDDLDDDDIDDDDDDEDDDEDDDDDDVDDEDEEKKEA 175
Score = 31.5 bits (72), Expect = 0.071
Identities = 5/51 (9%), Positives = 40/51 (78%)
Query: 5 EEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEE 55
++ + + +++++++++++ D+++ ++D+++E+++E++++++ ++E+
Sbjct: 119 NYVKDIDVLNQADDDDDDDDDDDLDDDDIDDDDDDEDDDEDDDDDDVDDED 169
>gnl|CDD|226894 COG4499, COG4499, Predicted membrane protein [Function unknown].
Length = 434
Score = 38.2 bits (89), Expect = 3e-04
Identities = 15/50 (30%), Positives = 34/50 (68%)
Query: 4 REEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEE 53
++ E K+E + EE E + +EE+ +EE E+ ++E+ +E++E+ +++E
Sbjct: 383 KKLGEVKDETDASEEAEAKAKEEKLKQEENEKKQKEQADEDKEKRQKDER 432
Score = 35.5 bits (82), Expect = 0.003
Identities = 12/50 (24%), Positives = 35/50 (70%)
Query: 6 EEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEE 55
++ + ++E + EE E + +EE ++EE +++++E+ +E++E+ +++E
Sbjct: 383 KKLGEVKDETDASEEAEAKAKEEKLKQEENEKKQKEQADEDKEKRQKDER 432
Score = 35.2 bits (81), Expect = 0.004
Identities = 15/58 (25%), Positives = 37/58 (63%)
Query: 3 KREEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEELQAGG 60
K ++ +K E K+E + EE E + EE+ +++E E++++E+ +E++E+ ++ +
Sbjct: 377 KLQDYTKKLGEVKDETDASEEAEAKAKEEKLKQEENEKKQKEQADEDKEKRQKDERKK 434
Score = 33.6 bits (77), Expect = 0.013
Identities = 14/55 (25%), Positives = 35/55 (63%)
Query: 3 KREEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEELQ 57
++E +E ++ ++ ++ E ++E D EE E + +EE+ ++EE E++++E+
Sbjct: 367 RQELLKEYNKKLQDYTKKLGEVKDETDASEEAEAKAKEEKLKQEENEKKQKEQAD 421
Score = 33.2 bits (76), Expect = 0.016
Identities = 14/53 (26%), Positives = 37/53 (69%)
Query: 5 EEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEELQ 57
++ ++ ++ E ++E + EE E + +EE+ ++EE E++++E+ +E++E+ Q
Sbjct: 376 KKLQDYTKKLGEVKDETDASEEAEAKAKEEKLKQEENEKKQKEQADEDKEKRQ 428
Score = 32.8 bits (75), Expect = 0.024
Identities = 12/52 (23%), Positives = 35/52 (67%)
Query: 4 REEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEE 55
+E ++ ++ K+ E ++E + E+ E + ++E+ ++EE E++++E+ +E+
Sbjct: 372 KEYNKKLQDYTKKLGEVKDETDASEEAEAKAKEEKLKQEENEKKQKEQADED 423
Score = 32.5 bits (74), Expect = 0.032
Identities = 12/51 (23%), Positives = 34/51 (66%)
Query: 1 MGKREEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEE 51
K E +++ + +E E + +EE+ +++E E+++ E+ +E++E+ +++E
Sbjct: 382 TKKLGEVKDETDASEEAEAKAKEEKLKQEENEKKQKEQADEDKEKRQKDER 432
Score = 32.1 bits (73), Expect = 0.046
Identities = 13/53 (24%), Positives = 35/53 (66%)
Query: 3 KREEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEE 55
K ++ ++ +K E ++E + EE E + +E++ ++EE E++++E+ +E++
Sbjct: 372 KEYNKKLQDYTKKLGEVKDETDASEEAEAKAKEEKLKQEENEKKQKEQADEDK 424
Score = 30.9 bits (70), Expect = 0.10
Identities = 13/58 (22%), Positives = 34/58 (58%)
Query: 1 MGKREEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEELQA 58
+ + +E +E K+ ++ ++ E +DE + E+ E + +EE+ ++EE E+++ +
Sbjct: 362 LSGDKRQELLKEYNKKLQDYTKKLGEVKDETDASEEAEAKAKEEKLKQEENEKKQKEQ 419
Score = 27.1 bits (60), Expect = 2.5
Identities = 11/50 (22%), Positives = 27/50 (54%)
Query: 9 EKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEELQA 58
+K +E +E ++ +D ++ + ++E + EE E + +EE+L+
Sbjct: 360 TDLSGDKRQELLKEYNKKLQDYTKKLGEVKDETDASEEAEAKAKEEKLKQ 409
>gnl|CDD|227596 COG5271, MDN1, AAA ATPase containing von Willebrand factor type A
(vWA) domain [General function prediction only].
Length = 4600
Score = 37.7 bits (87), Expect = 5e-04
Identities = 20/62 (32%), Positives = 35/62 (56%), Gaps = 5/62 (8%)
Query: 3 KREEEEEKEEEEKEEEEEEEEEEEEEDEEEEE-----EDEEEEEEEEEEEEEEEEEEELQ 57
K E + EK+E ++E+ EE +ED ++++ ED+E+ E+ EE +E EE +
Sbjct: 4020 KEEADAEKDEPMQDEDPLEENNTLDEDIQQDDFSDLAEDDEKMNEDGFEENVQENEESTE 4079
Query: 58 AG 59
G
Sbjct: 4080 DG 4081
Score = 36.5 bits (84), Expect = 0.002
Identities = 14/54 (25%), Positives = 33/54 (61%)
Query: 4 REEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEELQ 57
E E++ E+ E + +E++++ E++D +E+E+EEE ++ ++E+Q
Sbjct: 3917 LETEQKSNEQSAANNESDLVSKEDDNKALEDKDRQEKEDEEEMSDDVGIDDEIQ 3970
Score = 36.1 bits (83), Expect = 0.002
Identities = 14/50 (28%), Positives = 31/50 (62%)
Query: 6 EEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEE 55
+E+ ++++ + E++E+ E+ EE +E+EE E+ + +EE E+ E
Sbjct: 4044 DEDIQQDDFSDLAEDDEKMNEDGFEENVQENEESTEDGVKSDEELEQGEV 4093
Score = 35.7 bits (82), Expect = 0.003
Identities = 18/62 (29%), Positives = 33/62 (53%), Gaps = 3/62 (4%)
Query: 2 GKREEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEE---EEELQA 58
+ E+ E+ E+ ++++ + ED+E+ ED EE +E EE E+ +EEL+
Sbjct: 4031 MQDEDPLEENNTLDEDIQQDDFSDLAEDDEKMNEDGFEENVQENEESTEDGVKSDEELEQ 4090
Query: 59 GG 60
G
Sbjct: 4091 GE 4092
Score = 35.7 bits (82), Expect = 0.003
Identities = 15/52 (28%), Positives = 32/52 (61%)
Query: 5 EEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEEL 56
+E++ K E+K+ +E+E+EEE +D ++E + + +E + E E+ +L
Sbjct: 3938 KEDDNKALEDKDRQEKEDEEEMSDDVGIDDEIQPDIQENNSQPPPENEDLDL 3989
Score = 34.6 bits (79), Expect = 0.007
Identities = 13/48 (27%), Positives = 29/48 (60%)
Query: 5 EEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEE 52
++ + E++++ E+ EE +E+EE E+ + +EE E+ E E++
Sbjct: 4050 DDFSDLAEDDEKMNEDGFEENVQENEESTEDGVKSDEELEQGEVPEDQ 4097
Score = 34.2 bits (78), Expect = 0.008
Identities = 15/48 (31%), Positives = 27/48 (56%)
Query: 6 EEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEE 53
E++EK E+ EE +E EE ED + +E+ E+ E E++ + +
Sbjct: 4057 EDDEKMNEDGFEENVQENEESTEDGVKSDEELEQGEVPEDQAIDNHPK 4104
Score = 34.2 bits (78), Expect = 0.010
Identities = 16/55 (29%), Positives = 29/55 (52%)
Query: 5 EEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEELQAG 59
E EE E +++ E+ E D +E+D + E+++ +E+E+EEE G
Sbjct: 3910 EPNEEDLLETEQKSNEQSAANNESDLVSKEDDNKALEDKDRQEKEDEEEMSDDVG 3964
Score = 33.8 bits (77), Expect = 0.015
Identities = 11/52 (21%), Positives = 30/52 (57%)
Query: 4 REEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEE 55
E+ E + +E++ + E++D +E+E++EE ++ ++E + + +E
Sbjct: 3924 NEQSAANNESDLVSKEDDNKALEDKDRQEKEDEEEMSDDVGIDDEIQPDIQE 3975
Score = 33.4 bits (76), Expect = 0.017
Identities = 13/50 (26%), Positives = 25/50 (50%)
Query: 7 EEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEEL 56
EE+ + +E E E E + + ++ E E + EEE ++ +EE+
Sbjct: 3843 EEDTANQSDLDESEARELESDMNGVTKDSVVSENENSDSEEENQDLDEEV 3892
Score = 33.0 bits (75), Expect = 0.023
Identities = 12/49 (24%), Positives = 28/49 (57%)
Query: 5 EEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEE 53
E + +E+ + E+++ +E+EDEEE +D ++E + + +E +
Sbjct: 3931 NESDLVSKEDDNKALEDKDRQEKEDEEEMSDDVGIDDEIQPDIQENNSQ 3979
Score = 33.0 bits (75), Expect = 0.026
Identities = 11/59 (18%), Positives = 32/59 (54%), Gaps = 3/59 (5%)
Query: 3 KREEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEE---EEEEEEEEEEELQA 58
++ E+ E + +E++ + ED++ +E+++EEE ++ ++E + + +E
Sbjct: 3921 QKSNEQSAANNESDLVSKEDDNKALEDKDRQEKEDEEEMSDDVGIDDEIQPDIQENNSQ 3979
Score = 32.3 bits (73), Expect = 0.048
Identities = 15/57 (26%), Positives = 32/57 (56%), Gaps = 4/57 (7%)
Query: 5 EEEEEKEEEEKEEEE----EEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEELQ 57
EE +E+ ++++ E++E+ E+ EE ++ EE E+ + +EE E+ E+
Sbjct: 4038 EENNTLDEDIQQDDFSDLAEDDEKMNEDGFEENVQENEESTEDGVKSDEELEQGEVP 4094
Score = 31.9 bits (72), Expect = 0.058
Identities = 14/47 (29%), Positives = 27/47 (57%)
Query: 8 EEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEE 54
E+K+ +EKE+EEE ++ +DE + + E + E E+ + E+
Sbjct: 3946 EDKDRQEKEDEEEMSDDVGIDDEIQPDIQENNSQPPPENEDLDLPED 3992
Score = 31.5 bits (71), Expect = 0.071
Identities = 11/53 (20%), Positives = 30/53 (56%)
Query: 5 EEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEELQ 57
+ KE++ K E+++ +E+E+E+E ++ ++E + + +E + E +
Sbjct: 3933 SDLVSKEDDNKALEDKDRQEKEDEEEMSDDVGIDDEIQPDIQENNSQPPPENE 3985
Score = 31.5 bits (71), Expect = 0.083
Identities = 17/54 (31%), Positives = 33/54 (61%), Gaps = 3/54 (5%)
Query: 8 EEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEE---EEELQA 58
+EKE + ++ + E+ + E DE +EE D E++E ++E+ EE +E++Q
Sbjct: 3996 DEKEGDVSKDSDLEDMDMEAADENKEEADAEKDEPMQDEDPLEENNTLDEDIQQ 4049
Score = 31.1 bits (70), Expect = 0.097
Identities = 11/49 (22%), Positives = 30/49 (61%)
Query: 3 KREEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEE 51
K ++ + E+++++E+E+EEE ++ ++E + + +E + E E+
Sbjct: 3938 KEDDNKALEDKDRQEKEDEEEMSDDVGIDDEIQPDIQENNSQPPPENED 3986
Score = 31.1 bits (70), Expect = 0.099
Identities = 12/50 (24%), Positives = 30/50 (60%)
Query: 6 EEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEE 55
E ++ +EE + E++E ++E+ EE DE+ ++++ + E++E+
Sbjct: 4014 EAADENKEEADAEKDEPMQDEDPLEENNTLDEDIQQDDFSDLAEDDEKMN 4063
Score = 31.1 bits (70), Expect = 0.12
Identities = 14/53 (26%), Positives = 30/53 (56%)
Query: 5 EEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEELQ 57
E+E + ++ E+ + E +E ++E + E+DE ++E+ EE +E+ Q
Sbjct: 3997 EKEGDVSKDSDLEDMDMEAADENKEEADAEKDEPMQDEDPLEENNTLDEDIQQ 4049
Score = 30.0 bits (67), Expect = 0.29
Identities = 15/60 (25%), Positives = 26/60 (43%), Gaps = 14/60 (23%)
Query: 6 EEEEKEEEEKEEEEEEEEEEEEEDEEEE--------------EEDEEEEEEEEEEEEEEE 51
E++ EE EE+ + + +E E E E+E + EEE ++ +EE
Sbjct: 3832 NEDDDLEELANEEDTANQSDLDESEARELESDMNGVTKDSVVSENENSDSEEENQDLDEE 3891
Score = 29.6 bits (66), Expect = 0.33
Identities = 13/54 (24%), Positives = 25/54 (46%)
Query: 3 KREEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEEL 56
+ + E E +E E + ++ E E + EEE ++ +EE + E+L
Sbjct: 3846 TANQSDLDESEARELESDMNGVTKDSVVSENENSDSEEENQDLDEEVNDIPEDL 3899
Score = 29.6 bits (66), Expect = 0.35
Identities = 11/49 (22%), Positives = 28/49 (57%)
Query: 4 REEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEE 52
+E++ + E++ +E+E+EEE ++ ++E + +E + E E+
Sbjct: 3938 KEDDNKALEDKDRQEKEDEEEMSDDVGIDDEIQPDIQENNSQPPPENED 3986
Score = 29.6 bits (66), Expect = 0.36
Identities = 16/56 (28%), Positives = 33/56 (58%)
Query: 4 REEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEELQAG 59
E+ E+E+E+ +E E+E+ ++ D ++ D +++ E E EEE+ E ++G
Sbjct: 2925 VSEQIEEEDEKDDEYGEQEKVSDKNDYLKDFIDYDDDGSISTESEPEEEKRECESG 2980
Score = 29.6 bits (66), Expect = 0.38
Identities = 15/61 (24%), Positives = 27/61 (44%)
Query: 2 GKREEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEELQAGGH 61
G E +E EE ++ + +EE E+ E E++ D + + + E +EE G
Sbjct: 4066 GFEENVQENEESTEDGVKSDEELEQGEVPEDQAIDNHPKMDAKSTFASAEADEENTDKGI 4125
Query: 62 G 62
Sbjct: 4126 V 4126
Score = 29.6 bits (66), Expect = 0.40
Identities = 14/48 (29%), Positives = 31/48 (64%)
Query: 8 EEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEE 55
E+ + +EKE + ++ + E+ D E +E++EE + E++E ++E+ E
Sbjct: 3991 EDLKLDEKEGDVSKDSDLEDMDMEAADENKEEADAEKDEPMQDEDPLE 4038
Score = 29.6 bits (66), Expect = 0.43
Identities = 16/66 (24%), Positives = 26/66 (39%), Gaps = 11/66 (16%)
Query: 2 GKREEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEE-----------EEEEEEEEE 50
G + E++ EE EE+ + + +E E E E E E + E
Sbjct: 3823 GAEDITNTLNEDDDLEELANEEDTANQSDLDESEARELESDMNGVTKDSVVSENENSDSE 3882
Query: 51 EEEEEL 56
EE ++L
Sbjct: 3883 EENQDL 3888
Score = 29.2 bits (65), Expect = 0.46
Identities = 14/58 (24%), Positives = 27/58 (46%)
Query: 6 EEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEELQAGGHGI 63
EE +E EE E+ + +EE E+ E E++ + + + + E + + GI
Sbjct: 4068 EENVQENEESTEDGVKSDEELEQGEVPEDQAIDNHPKMDAKSTFASAEADEENTDKGI 4125
Score = 29.2 bits (65), Expect = 0.52
Identities = 15/56 (26%), Positives = 33/56 (58%), Gaps = 1/56 (1%)
Query: 2 GKREEEEEKEEEEKEEEEEEEEEEE-EEDEEEEEEDEEEEEEEEEEEEEEEEEEEL 56
G ++ + E+ + E +E +EE + E+DE ++ED EE +E+ ++++ +L
Sbjct: 4000 GDVSKDSDLEDMDMEAADENKEEADAEKDEPMQDEDPLEENNTLDEDIQQDDFSDL 4055
Score = 29.2 bits (65), Expect = 0.53
Identities = 11/47 (23%), Positives = 29/47 (61%)
Query: 6 EEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEE 52
E+++++E+E EEE ++ ++E + + +E+ + E E+ + E+
Sbjct: 3946 EDKDRQEKEDEEEMSDDVGIDDEIQPDIQENNSQPPPENEDLDLPED 3992
Score = 28.8 bits (64), Expect = 0.68
Identities = 16/62 (25%), Positives = 29/62 (46%)
Query: 3 KREEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEELQAGGHG 62
K +EE E+ E +++ + + + + E +EE ++ E EE EE G+G
Sbjct: 4083 KSDEELEQGEVPEDQAIDNHPKMDAKSTFASAEADEENTDKGIVGENEELGEEDGVRGNG 4142
Query: 63 IA 64
A
Sbjct: 4143 TA 4144
Score = 27.7 bits (61), Expect = 1.7
Identities = 12/55 (21%), Positives = 33/55 (60%)
Query: 1 MGKREEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEE 55
+ ++E + K+ + ++ + E +E +EE + E++E ++E+ EE +E+ ++
Sbjct: 3995 LDEKEGDVSKDSDLEDMDMEAADENKEEADAEKDEPMQDEDPLEENNTLDEDIQQ 4049
Score = 27.3 bits (60), Expect = 2.6
Identities = 14/54 (25%), Positives = 27/54 (50%)
Query: 5 EEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEELQA 58
E E + EE+ ++ +EE + ED ++ +E EE+ E E++ Q+
Sbjct: 3874 SENENSDSEEENQDLDEEVNDIPEDLSNSLNEKLWDEPNEEDLLETEQKSNEQS 3927
Score = 26.5 bits (58), Expect = 3.8
Identities = 12/52 (23%), Positives = 24/52 (46%)
Query: 5 EEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEEL 56
+E E E E + ++ E+E + E+E ++ +EE + E+ L
Sbjct: 3852 LDESEARELESDMNGVTKDSVVSENENSDSEEENQDLDEEVNDIPEDLSNSL 3903
Score = 26.1 bits (57), Expect = 5.6
Identities = 14/63 (22%), Positives = 32/63 (50%), Gaps = 8/63 (12%)
Query: 3 KREEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEE--------EEEEEEEEEEEEEEEE 54
+ + +E + E E+ + E+ + DE+E + ++ E +E +EE + E++E
Sbjct: 3970 QPDIQENNSQPPPENEDLDLPEDLKLDEKEGDVSKDSDLEDMDMEAADENKEEADAEKDE 4029
Query: 55 ELQ 57
+Q
Sbjct: 4030 PMQ 4032
Score = 25.7 bits (56), Expect = 7.8
Identities = 16/60 (26%), Positives = 26/60 (43%), Gaps = 6/60 (10%)
Query: 3 KREEEEEKEEEEKEE------EEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEEL 56
+ + +E E E E ++ E E D EEE +D +EE + E+ E+L
Sbjct: 3848 NQSDLDESEARELESDMNGVTKDSVVSENENSDSEEENQDLDEEVNDIPEDLSNSLNEKL 3907
>gnl|CDD|179712 PRK04019, rplP0, acidic ribosomal protein P0; Validated.
Length = 330
Score = 37.5 bits (88), Expect = 5e-04
Identities = 22/45 (48%), Positives = 28/45 (62%)
Query: 15 KEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEELQAG 59
++ +EE +E + + EEEEEEEEEEEEEE EEE AG
Sbjct: 280 DKDALDEELKEVLSAQAQAAAAEEEEEEEEEEEEEEPSEEEAAAG 324
Score = 36.4 bits (85), Expect = 0.001
Identities = 20/41 (48%), Positives = 26/41 (63%)
Query: 14 EKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEE 54
+K+ +EE +E + +EEEEEEEEEEEEE EEE
Sbjct: 280 DKDALDEELKEVLSAQAQAAAAEEEEEEEEEEEEEEPSEEE 320
Score = 36.0 bits (84), Expect = 0.002
Identities = 19/41 (46%), Positives = 27/41 (65%)
Query: 6 EEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEE 46
+++ +EE KE + + E+EEEEEE+EEEEE EEE
Sbjct: 280 DKDALDEELKEVLSAQAQAAAAEEEEEEEEEEEEEEPSEEE 320
Score = 36.0 bits (84), Expect = 0.002
Identities = 21/49 (42%), Positives = 29/49 (59%)
Query: 10 KEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEELQA 58
+++ +EE +E + + EEE+EEEEEEEEEE EEE L A
Sbjct: 279 ADKDALDEELKEVLSAQAQAAAAEEEEEEEEEEEEEEPSEEEAAAGLGA 327
Score = 35.6 bits (83), Expect = 0.002
Identities = 19/35 (54%), Positives = 23/35 (65%)
Query: 5 EEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEE 39
EE +E + + EEEEEEEE+EEEEE EEE
Sbjct: 286 EELKEVLSAQAQAAAAEEEEEEEEEEEEEEPSEEE 320
Score = 35.2 bits (82), Expect = 0.003
Identities = 22/48 (45%), Positives = 29/48 (60%)
Query: 15 KEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEELQAGGHG 62
+++ +EE +E + + EEEEEEEEEEEEEE EE A G G
Sbjct: 279 ADKDALDEELKEVLSAQAQAAAAEEEEEEEEEEEEEEPSEEEAAAGLG 326
Score = 34.5 bits (80), Expect = 0.007
Identities = 17/40 (42%), Positives = 26/40 (65%)
Query: 5 EEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEE 44
++ ++E +E + + EEE+EEEEEE+EEE EEE
Sbjct: 281 KDALDEELKEVLSAQAQAAAAEEEEEEEEEEEEEEPSEEE 320
Score = 33.7 bits (78), Expect = 0.011
Identities = 19/41 (46%), Positives = 27/41 (65%)
Query: 9 EKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEE 49
+K+ ++E +E + + EEEEE+EEEEEEEE EEE
Sbjct: 280 DKDALDEELKEVLSAQAQAAAAEEEEEEEEEEEEEEPSEEE 320
Score = 33.7 bits (78), Expect = 0.011
Identities = 17/43 (39%), Positives = 27/43 (62%)
Query: 1 MGKREEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEE 43
+ ++ +E+ +E + + EEEE+EEEEEE+EE EEE
Sbjct: 278 LADKDALDEELKEVLSAQAQAAAAEEEEEEEEEEEEEEPSEEE 320
Score = 32.5 bits (75), Expect = 0.026
Identities = 17/41 (41%), Positives = 26/41 (63%)
Query: 5 EEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEE 45
+++ EE ++ + + EE+EEEEEE+EEEE EEE
Sbjct: 280 DKDALDEELKEVLSAQAQAAAAEEEEEEEEEEEEEEPSEEE 320
Score = 31.8 bits (73), Expect = 0.051
Identities = 18/47 (38%), Positives = 27/47 (57%)
Query: 18 EEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEELQAGGHGIA 64
+++ +EE +E + + EEEEEEEEEEEEEE + G+
Sbjct: 280 DKDALDEELKEVLSAQAQAAAAEEEEEEEEEEEEEEPSEEEAAAGLG 326
>gnl|CDD|219655 pfam07946, DUF1682, Protein of unknown function (DUF1682). The
members of this family are all hypothetical eukaryotic
proteins of unknown function. One member is described as
being an adipocyte-specific protein, but no evidence of
this was found.
Length = 322
Score = 37.6 bits (88), Expect = 5e-04
Identities = 21/51 (41%), Positives = 36/51 (70%)
Query: 4 REEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEE 54
REEEEEK + EEE +EE +E++E++++EE + + + EE+ + EE+E
Sbjct: 265 REEEEEKILKAAEEERQEEAQEKKEEKKKEEREAKLAKLSPEEQRKLEEKE 315
Score = 32.6 bits (75), Expect = 0.026
Identities = 15/48 (31%), Positives = 32/48 (66%)
Query: 3 KREEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEE 50
+ EEE++EE +E++EE+++EE E + +E+ + EE+E +++
Sbjct: 273 LKAAEEERQEEAQEKKEEKKKEEREAKLAKLSPEEQRKLEEKERKKQA 320
Score = 31.8 bits (73), Expect = 0.046
Identities = 17/43 (39%), Positives = 27/43 (62%)
Query: 14 EKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEEL 56
E+EEE+ + EEE EE +E+ EE+++EE E + + EE
Sbjct: 266 EEEEEKILKAAEEERQEEAQEKKEEKKKEEREAKLAKLSPEEQ 308
Score = 31.8 bits (73), Expect = 0.054
Identities = 18/52 (34%), Positives = 35/52 (67%)
Query: 7 EEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEELQA 58
++ +EEEE++ + EEE +EE +E++EE ++EE E + + EE+ +L+
Sbjct: 262 DKTREEEEEKILKAAEEERQEEAQEKKEEKKKEEREAKLAKLSPEEQRKLEE 313
Score = 30.3 bits (69), Expect = 0.19
Identities = 16/37 (43%), Positives = 26/37 (70%)
Query: 23 EEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEELQAG 59
EEEEE+ + EE+ +EE +E++EE+++EE E A
Sbjct: 266 EEEEEKILKAAEEERQEEAQEKKEEKKKEEREAKLAK 302
>gnl|CDD|222581 pfam14181, YqfQ, YqfQ-like protein. The YqfQ-like protein family
includes the B. subtilis YqfQ protein, also known as
VrrA, which is functionally uncharacterized. This family
of proteins is found in bacteria. Proteins in this
family are typically between 146 and 237 amino acids in
length. There are two conserved sequence motifs: QYGP
and PKLY.
Length = 155
Score = 37.0 bits (86), Expect = 6e-04
Identities = 16/47 (34%), Positives = 31/47 (65%)
Query: 5 EEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEE 51
+EEEE EEE +E E+E+ E + + +E+++ E + + E+E+ + E
Sbjct: 96 DEEEETEEESTDETEQEDPPETKTESKEKKKREVPKPKTEKEKPKTE 142
Score = 34.7 bits (80), Expect = 0.003
Identities = 16/48 (33%), Positives = 31/48 (64%)
Query: 5 EEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEE 52
++EEE+ EEE +E E+E+ E + E +E++ E + + E+E+ + E
Sbjct: 95 DDEEEETEEESTDETEQEDPPETKTESKEKKKREVPKPKTEKEKPKTE 142
Score = 34.7 bits (80), Expect = 0.003
Identities = 15/48 (31%), Positives = 30/48 (62%)
Query: 11 EEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEELQA 58
++EE+E EEE +E E+ED E + + +E+++ E + + E+E+
Sbjct: 95 DDEEEETEEESTDETEQEDPPETKTESKEKKKREVPKPKTEKEKPKTE 142
Score = 34.0 bits (78), Expect = 0.006
Identities = 15/49 (30%), Positives = 31/49 (63%)
Query: 6 EEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEE 54
++E+EE E+E +E E+E+ E + E +E ++ E + + E+E+ + E
Sbjct: 94 SDDEEEETEEESTDETEQEDPPETKTESKEKKKREVPKPKTEKEKPKTE 142
Score = 34.0 bits (78), Expect = 0.007
Identities = 15/51 (29%), Positives = 30/51 (58%)
Query: 3 KREEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEE 53
++EE+E EE+ +E E+E+ E E +E+ + E + + E+E+ + E
Sbjct: 92 SSSDDEEEETEEESTDETEQEDPPETKTESKEKKKREVPKPKTEKEKPKTE 142
Score = 33.2 bits (76), Expect = 0.011
Identities = 16/48 (33%), Positives = 29/48 (60%)
Query: 8 EEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEE 55
+ EEEE EEE +E E+E+ E + E E+++ E + + E+E+ +
Sbjct: 94 SDDEEEETEEESTDETEQEDPPETKTESKEKKKREVPKPKTEKEKPKT 141
Score = 33.2 bits (76), Expect = 0.013
Identities = 17/52 (32%), Positives = 32/52 (61%)
Query: 4 REEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEE 55
RE +EEE+ EEE +E E+E+ E + E +E+++ E + + E+E+ +
Sbjct: 89 RELSSSDDEEEETEEESTDETEQEDPPETKTESKEKKKREVPKPKTEKEKPK 140
Score = 33.2 bits (76), Expect = 0.013
Identities = 13/49 (26%), Positives = 32/49 (65%)
Query: 7 EEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEE 55
+++EEE +EE +E E+E+ + + E +++++ E + + E+E+ + E
Sbjct: 94 SDDEEEETEEESTDETEQEDPPETKTESKEKKKREVPKPKTEKEKPKTE 142
Score = 32.0 bits (73), Expect = 0.030
Identities = 15/49 (30%), Positives = 29/49 (59%)
Query: 2 GKREEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEE 50
EEEE +EE E E+E+ E + E +E+++ + + + E+E+ + E
Sbjct: 94 SDDEEEETEEESTDETEQEDPPETKTESKEKKKREVPKPKTEKEKPKTE 142
Score = 32.0 bits (73), Expect = 0.036
Identities = 15/48 (31%), Positives = 27/48 (56%)
Query: 10 KEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEELQ 57
+++EEE EEE +E E E+ E E +E+++ E + + E+E
Sbjct: 92 SSSDDEEEETEEESTDETEQEDPPETKTESKEKKKREVPKPKTEKEKP 139
Score = 26.3 bits (58), Expect = 3.1
Identities = 10/30 (33%), Positives = 17/30 (56%)
Query: 30 EEEEEEDEEEEEEEEEEEEEEEEEEELQAG 59
++EEE+ EEE +E E+E+ E +
Sbjct: 94 SDDEEEETEEESTDETEQEDPPETKTESKE 123
>gnl|CDD|233692 TIGR02031, BchD-ChlD, magnesium chelatase ATPase subunit D. This
model represents one of two ATPase subunits of the
trimeric magnesium chelatase responsible for insertion
of magnesium ion into protoporphyrin IX. This is an
essential step in the biosynthesis of both chlorophyll
and bacteriochlorophyll. This subunit is found in green
plants, photosynthetic algae, cyanobacteria and other
photosynthetic bacteria. Unlike subunit I (TIGR02030),
this subunit is not found in archaea [Biosynthesis of
cofactors, prosthetic groups, and carriers, Chlorophyll
and bacteriochlorphyll].
Length = 589
Score = 37.5 bits (87), Expect = 7e-04
Identities = 14/44 (31%), Positives = 22/44 (50%)
Query: 13 EEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEEL 56
E E + E E EEE DE ++ + ++ EE ++ EEL
Sbjct: 267 PEPEPQPPPPPPPPEPPEPEEEPDEPDQTDPDDGEETDQIPEEL 310
Score = 35.2 bits (81), Expect = 0.004
Identities = 11/43 (25%), Positives = 21/43 (48%)
Query: 8 EEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEE 50
E E + E E EE+ +E ++ + ++ EE ++ EE
Sbjct: 267 PEPEPQPPPPPPPPEPPEPEEEPDEPDQTDPDDGEETDQIPEE 309
Score = 34.8 bits (80), Expect = 0.006
Identities = 13/42 (30%), Positives = 21/42 (50%)
Query: 5 EEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEE 46
E E + E E EEE +E ++ + +D EE ++ EE
Sbjct: 268 EPEPQPPPPPPPPEPPEPEEEPDEPDQTDPDDGEETDQIPEE 309
Score = 34.0 bits (78), Expect = 0.009
Identities = 12/43 (27%), Positives = 21/43 (48%)
Query: 5 EEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEE 47
E E + E E EEE ++ ++ + D+ EE ++ EE
Sbjct: 267 PEPEPQPPPPPPPPEPPEPEEEPDEPDQTDPDDGEETDQIPEE 309
Score = 33.6 bits (77), Expect = 0.012
Identities = 14/45 (31%), Positives = 22/45 (48%)
Query: 4 REEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEE 48
R E E + E E EEE DE ++ + ++ EE ++ EE
Sbjct: 265 RLPEPEPQPPPPPPPPEPPEPEEEPDEPDQTDPDDGEETDQIPEE 309
Score = 33.6 bits (77), Expect = 0.013
Identities = 12/43 (27%), Positives = 21/43 (48%)
Query: 11 EEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEE 53
E E + E E EEE +E ++ + ++ EE ++ EE
Sbjct: 267 PEPEPQPPPPPPPPEPPEPEEEPDEPDQTDPDDGEETDQIPEE 309
Score = 32.5 bits (74), Expect = 0.039
Identities = 12/43 (27%), Positives = 21/43 (48%)
Query: 7 EEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEE 49
E + + E E EEE +E ++ D ++ EE ++ EE
Sbjct: 267 PEPEPQPPPPPPPPEPPEPEEEPDEPDQTDPDDGEETDQIPEE 309
Score = 32.1 bits (73), Expect = 0.041
Identities = 9/43 (20%), Positives = 21/43 (48%)
Query: 12 EEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEE 54
E + + E + EEE ++ ++ + ++ EE ++ EE
Sbjct: 267 PEPEPQPPPPPPPPEPPEPEEEPDEPDQTDPDDGEETDQIPEE 309
Score = 31.7 bits (72), Expect = 0.058
Identities = 11/48 (22%), Positives = 21/48 (43%)
Query: 4 REEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEE 51
R + E + E E E+E +E + + ++ EE ++ EE
Sbjct: 262 RATRLPEPEPQPPPPPPPPEPPEPEEEPDEPDQTDPDDGEETDQIPEE 309
Score = 31.3 bits (71), Expect = 0.078
Identities = 10/39 (25%), Positives = 18/39 (46%)
Query: 19 EEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEELQ 57
E E + E + EEE +E ++ + ++ EE Q
Sbjct: 267 PEPEPQPPPPPPPPEPPEPEEEPDEPDQTDPDDGEETDQ 305
Score = 30.5 bits (69), Expect = 0.18
Identities = 12/52 (23%), Positives = 24/52 (46%)
Query: 5 EEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEEL 56
+ E E EEE +E ++ D ++ EE ++ EE + E + + +
Sbjct: 272 QPPPPPPPPEPPEPEEEPDEPDQTDPDDGEETDQIPEELMFDAVEADLPDNI 323
Score = 26.7 bits (59), Expect = 2.9
Identities = 13/53 (24%), Positives = 23/53 (43%)
Query: 5 EEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEELQ 57
E E EEE +E ++ + ++ EE D+ EE + E + + L
Sbjct: 273 PPPPPPPPEPPEPEEEPDEPDQTDPDDGEETDQIPEELMFDAVEADLPDNILA 325
Score = 25.9 bits (57), Expect = 6.0
Identities = 11/51 (21%), Positives = 24/51 (47%)
Query: 9 EKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEELQAG 59
+ E +EE +E ++ + ++ EE ++ EE + E + + LQ
Sbjct: 280 PEPPEPEEEPDEPDQTDPDDGEETDQIPEELMFDAVEADLPDNILATLQTV 330
>gnl|CDD|227693 COG5406, COG5406, Nucleosome binding factor SPN, SPT16 subunit
[Transcription / DNA replication, recombination, and
repair / Chromatin structure and dynamics].
Length = 1001
Score = 37.3 bits (86), Expect = 7e-04
Identities = 19/50 (38%), Positives = 31/50 (62%)
Query: 5 EEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEE 54
E EEE E E ++E +E +E+E+ +E ED E+E E + +EE+ E+
Sbjct: 933 ESEEEVSEYEASSDDESDETDEDEESDESSEDLSEDESENDSSDEEDGED 982
Score = 36.5 bits (84), Expect = 0.001
Identities = 16/48 (33%), Positives = 28/48 (58%)
Query: 5 EEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEE 52
E +E E+EE +E E+ E+E E++ +EED E+ +E E + +
Sbjct: 948 ESDETDEDEESDESSEDLSEDESENDSSDEEDGEDWDELESKAAYDSR 995
Score = 36.1 bits (83), Expect = 0.002
Identities = 15/51 (29%), Positives = 28/51 (54%)
Query: 5 EEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEE 55
++E E +E EE +E E+ E++ E + DEE+ E+ +E E + +
Sbjct: 945 SDDESDETDEDEESDESSEDLSEDESENDSSDEEDGEDWDELESKAAYDSR 995
Score = 35.8 bits (82), Expect = 0.002
Identities = 18/54 (33%), Positives = 31/54 (57%)
Query: 2 GKREEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEE 55
EEE E E ++E +E +E+EE +E E+ E+E E + +EE+ E+ +
Sbjct: 931 SDESEEEVSEYEASSDDESDETDEDEESDESSEDLSEDESENDSSDEEDGEDWD 984
Score = 35.8 bits (82), Expect = 0.003
Identities = 24/65 (36%), Positives = 36/65 (55%), Gaps = 8/65 (12%)
Query: 2 GKREEEEEKEEEEKEEEEEEEEEEEEEDEEEE--------EEDEEEEEEEEEEEEEEEEE 53
G +E +E EEE E E ++E +E DE+EE EDE E + +EE+ E+ +E
Sbjct: 926 GSDDESDESEEEVSEYEASSDDESDETDEDEESDESSEDLSEDESENDSSDEEDGEDWDE 985
Query: 54 EELQA 58
E +A
Sbjct: 986 LESKA 990
Score = 33.4 bits (76), Expect = 0.016
Identities = 17/54 (31%), Positives = 32/54 (59%)
Query: 6 EEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEELQAG 59
++E +E E+E E E ++E DE +E+E+ +E E+ E+E E + + + G
Sbjct: 927 SDDESDESEEEVSEYEASSDDESDETDEDEESDESSEDLSEDESENDSSDEEDG 980
>gnl|CDD|218561 pfam05340, DUF740, Protein of unknown function (DUF740). This
family consists of several uncharacterized plant
proteins of unknown function.
Length = 565
Score = 37.3 bits (86), Expect = 8e-04
Identities = 21/38 (55%), Positives = 27/38 (71%)
Query: 21 EEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEELQA 58
EEEEE E EE+EE E+E + +E+ EEEEEEEL+
Sbjct: 140 LEEEEEVEMEEDEEYYEKEPGKVVDEKSEEEEEEELKT 177
Score = 36.2 bits (83), Expect = 0.002
Identities = 19/35 (54%), Positives = 25/35 (71%)
Query: 17 EEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEE 51
EEEEE E EE++E E+E + +E+ EEEEEEE
Sbjct: 140 LEEEEEVEMEEDEEYYEKEPGKVVDEKSEEEEEEE 174
Score = 35.8 bits (82), Expect = 0.003
Identities = 20/35 (57%), Positives = 25/35 (71%)
Query: 18 EEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEE 52
EEEEE E EEDEE E++ + +E+ EEEEEEE
Sbjct: 140 LEEEEEVEMEEDEEYYEKEPGKVVDEKSEEEEEEE 174
Score = 35.4 bits (81), Expect = 0.004
Identities = 19/38 (50%), Positives = 26/38 (68%)
Query: 13 EEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEE 50
+ EEEEE E EE+E+ E+E + +E+ EEEEEEE
Sbjct: 137 DLVLEEEEEVEMEEDEEYYEKEPGKVVDEKSEEEEEEE 174
Score = 34.6 bits (79), Expect = 0.007
Identities = 19/45 (42%), Positives = 29/45 (64%)
Query: 10 KEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEE 54
+ +EEEE E EE+EE E+E + +E+ EEEEEEE + ++
Sbjct: 136 PDLVLEEEEEVEMEEDEEYYEKEPGKVVDEKSEEEEEEELKTMKD 180
Score = 33.1 bits (75), Expect = 0.024
Identities = 19/41 (46%), Positives = 28/41 (68%)
Query: 9 EKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEE 49
+EEEE E EE+EE E+E + +E+ EEEEEEE + ++
Sbjct: 140 LEEEEEVEMEEDEEYYEKEPGKVVDEKSEEEEEEELKTMKD 180
Score = 32.7 bits (74), Expect = 0.032
Identities = 17/44 (38%), Positives = 29/44 (65%)
Query: 8 EEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEE 51
+ EEE+E E EE+EE E++ + +++ EEEEEEE + ++
Sbjct: 137 DLVLEEEEEVEMEEDEEYYEKEPGKVVDEKSEEEEEEELKTMKD 180
Score = 31.9 bits (72), Expect = 0.057
Identities = 18/41 (43%), Positives = 28/41 (68%)
Query: 7 EEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEE 47
EE+EE E EE+EE E+E + +E+ E+EEEEE + ++
Sbjct: 140 LEEEEEVEMEEDEEYYEKEPGKVVDEKSEEEEEEELKTMKD 180
Score = 30.8 bits (69), Expect = 0.13
Identities = 18/41 (43%), Positives = 28/41 (68%)
Query: 5 EEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEE 45
EEEE+ E E++EE E+E + DE+ EEE+EEE + ++
Sbjct: 140 LEEEEEVEMEEDEEYYEKEPGKVVDEKSEEEEEEELKTMKD 180
Score = 30.0 bits (67), Expect = 0.25
Identities = 17/41 (41%), Positives = 28/41 (68%)
Query: 6 EEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEE 46
EEE+E E +E+EE E+E + +E+ EE+EEEE + ++
Sbjct: 140 LEEEEEVEMEEDEEYYEKEPGKVVDEKSEEEEEEELKTMKD 180
Score = 25.8 bits (56), Expect = 7.5
Identities = 14/48 (29%), Positives = 24/48 (50%)
Query: 6 EEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEE 53
+++E+ E + E + + +EEEE E EE+EE E+E
Sbjct: 111 DDDEENLPSSIAPPEIDPEPRKPIVPDLVLEEEEEVEMEEDEEYYEKE 158
>gnl|CDD|221203 pfam11748, DUF3306, Protein of unknown function (DUF3306). This
family of proteobacterial species proteins has no known
function.
Length = 115
Score = 36.1 bits (84), Expect = 8e-04
Identities = 19/58 (32%), Positives = 25/58 (43%)
Query: 3 KREEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEELQAGG 60
K E+ E E EEE EEEE+ E E+EE EE + + + L G
Sbjct: 10 KLAVRAEEPAEPAETAEEEAAAAAPAPAPEEEEEAELEDEELLEELDLPDPDTLTPGS 67
Score = 31.9 bits (73), Expect = 0.025
Identities = 18/47 (38%), Positives = 23/47 (48%)
Query: 10 KEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEEL 56
++ + EE E E EE+ EEEEE E E+EE EEL
Sbjct: 9 RKLAVRAEEPAEPAETAEEEAAAAAPAPAPEEEEEAELEDEELLEEL 55
Score = 27.7 bits (62), Expect = 0.83
Identities = 13/54 (24%), Positives = 22/54 (40%)
Query: 5 EEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEELQA 58
E + EE+ EEE+E E E++E EE + + + + A
Sbjct: 18 PAEPAETAEEEAAAAAPAPAPEEEEEAELEDEELLEELDLPDPDTLTPGSDFSA 71
>gnl|CDD|130712 TIGR01651, CobT, cobaltochelatase, CobT subunit. This model
describes Pseudomonas denitrificans CobT gene product,
which is a cobalt chelatase subunit that functions in
cobalamin biosynthesis. Cobalamin (vitamin B12) can be
synthesized via several pathways, including an aerobic
pathway (found in Pseudomonas denitrificans) and an
anaerobic pathway (found in P. shermanii and Salmonella
typhimurium). These pathways differ in the point of
cobalt insertion during corrin ring formation. There are
apparently a number of variations on these two pathways,
where the major differences seem to be concerned with
the process of ring contraction. Confusion regarding the
functions of enzymes found in the aerobic vs. anaerobic
pathways has arisen because nonhomologous genes in these
different pathways were given the same gene symbols.
Thus, cobT in the aerobic pathway (P. denitrificans) is
not a homolog of cobT in the anaerobic pathway (S.
typhimurium). It should be noted that E. coli
synthesizes cobalamin only when it is supplied with the
precursor cobinamide, which is a complex intermediate.
Additionally, all E. coli cobalamin synthesis genes
(cobU, cobS and cobT) were named after their Salmonella
typhimurium homologs which function in the anaerobic
cobalamin synthesis pathway. This model describes the
aerobic cobalamin pathway Pseudomonas denitrificans CobT
gene product, which is a cobalt chelatase subunit, with
a MW ~70 kDa. The aerobic pathway cobalt chelatase is a
heterotrimeric, ATP-dependent enzyme that catalyzes
cobalt insertion during cobalamin biosynthesis. The
other two subunits are the P. denitrificans CobS
(TIGR01650) and CobN (pfam02514 CobN/Magnesium
Chelatase) proteins. To avoid potential confusion with
the nonhomologous Salmonella typhimurium/E.coli cobT
gene product, the P. denitrificans gene symbol is not
used in the name of this model [Biosynthesis of
cofactors, prosthetic groups, and carriers, Heme,
porphyrin, and cobalamin].
Length = 600
Score = 37.2 bits (86), Expect = 8e-04
Identities = 20/55 (36%), Positives = 31/55 (56%)
Query: 1 MGKREEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEE 55
MG E E++E+ + ++ E E+EE+ E E E +E +E E + E E EEE
Sbjct: 203 MGDDTESEDEEDGDDDQPTENEQEEQGEGEGEGQEGSAPQESEATDRESESGEEE 257
Score = 36.5 bits (84), Expect = 0.001
Identities = 16/54 (29%), Positives = 30/54 (55%)
Query: 5 EEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEELQA 58
++ E ++EE+ ++++ E E+EE+ E E E E +E E + E E E +
Sbjct: 205 DDTESEDEEDGDDDQPTENEQEEQGEGEGEGQEGSAPQESEATDRESESGEEEM 258
Score = 35.3 bits (81), Expect = 0.004
Identities = 17/56 (30%), Positives = 30/56 (53%)
Query: 5 EEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEELQAGG 60
E+EE+ ++++ E E+EE+ E E + +E +E E + E E EEE +
Sbjct: 210 EDEEDGDDDQPTENEQEEQGEGEGEGQEGSAPQESEATDRESESGEEEMVQSDQDD 265
Score = 33.4 bits (76), Expect = 0.019
Identities = 16/54 (29%), Positives = 32/54 (59%)
Query: 6 EEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEELQAG 59
EE + E ++EE+ ++++ E ++EE+ E E E +E +E E + E ++G
Sbjct: 201 EEMGDDTESEDEEDGDDDQPTENEQEEQGEGEGEGQEGSAPQESEATDRESESG 254
Score = 33.0 bits (75), Expect = 0.022
Identities = 15/55 (27%), Positives = 30/55 (54%)
Query: 5 EEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEELQAG 59
E+EE+ E E + +E +E E D E E +EE + ++++ +E +++ G
Sbjct: 224 EQEEQGEGEGEGQEGSAPQESEATDRESESGEEEMVQSDQDDLPDESDDDSETPG 278
Score = 33.0 bits (75), Expect = 0.023
Identities = 16/51 (31%), Positives = 27/51 (52%)
Query: 5 EEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEE 55
EE + E E EE+ ++++ E E EE+ E + E +E +E E + E
Sbjct: 201 EEMGDDTESEDEEDGDDDQPTENEQEEQGEGEGEGQEGSAPQESEATDRES 251
Score = 33.0 bits (75), Expect = 0.025
Identities = 17/58 (29%), Positives = 32/58 (55%)
Query: 5 EEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEELQAGGHG 62
E+EE+ E E E +E +E E + E E EEE + ++++ +E +++ + G G
Sbjct: 223 NEQEEQGEGEGEGQEGSAPQESEATDRESESGEEEMVQSDQDDLPDESDDDSETPGEG 280
Score = 32.6 bits (74), Expect = 0.027
Identities = 16/52 (30%), Positives = 30/52 (57%)
Query: 6 EEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEELQ 57
++++ E E+EE+ E E E +E +E E + E E EEE + ++++L
Sbjct: 216 DDDQPTENEQEEQGEGEGEGQEGSAPQESEATDRESESGEEEMVQSDQDDLP 267
Score = 32.2 bits (73), Expect = 0.049
Identities = 13/54 (24%), Positives = 29/54 (53%)
Query: 2 GKREEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEE 55
+EE+ + E E +E +E E + E E E+E + ++++ +E +++ E
Sbjct: 222 ENEQEEQGEGEGEGQEGSAPQESEATDRESESGEEEMVQSDQDDLPDESDDDSE 275
Score = 31.5 bits (71), Expect = 0.085
Identities = 17/40 (42%), Positives = 26/40 (65%)
Query: 16 EEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEE 55
E EE ++ E EDEE+ ++D+ E E+EE+ E E E +E
Sbjct: 198 ELAEEMGDDTESEDEEDGDDDQPTENEQEEQGEGEGEGQE 237
Score = 30.7 bits (69), Expect = 0.15
Identities = 14/52 (26%), Positives = 29/52 (55%)
Query: 4 REEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEE 55
E E+E++ E + E +E +E E + E E EEE + ++++ +E ++
Sbjct: 221 TENEQEEQGEGEGEGQEGSAPQESEATDRESESGEEEMVQSDQDDLPDESDD 272
Score = 30.7 bits (69), Expect = 0.16
Identities = 17/52 (32%), Positives = 30/52 (57%)
Query: 4 REEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEE 55
RE E E+ ++ E E+EE+ D+++ E+E+EE+ E E E +E +
Sbjct: 191 REMLRSMELAEEMGDDTESEDEEDGDDDQPTENEQEEQGEGEGEGQEGSAPQ 242
Score = 28.8 bits (64), Expect = 0.62
Identities = 14/49 (28%), Positives = 26/49 (53%)
Query: 2 GKREEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEE 50
G+ E +E +E E + E E EEE + +++D +E +++ E E
Sbjct: 231 GEGEGQEGSAPQESEATDRESESGEEEMVQSDQDDLPDESDDDSETPGE 279
Score = 27.2 bits (60), Expect = 2.4
Identities = 11/50 (22%), Positives = 24/50 (48%)
Query: 2 GKREEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEE 51
E +E ++ E + E E EE+ + ++D+ +E +++ E E
Sbjct: 230 EGEGEGQEGSAPQESEATDRESESGEEEMVQSDQDDLPDESDDDSETPGE 279
Score = 26.8 bits (59), Expect = 3.3
Identities = 15/41 (36%), Positives = 26/41 (63%)
Query: 19 EEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEELQAG 59
E EE ++ + E+EE+ ++++ E E+EE+ E E E Q G
Sbjct: 198 ELAEEMGDDTESEDEEDGDDDQPTENEQEEQGEGEGEGQEG 238
Score = 26.1 bits (57), Expect = 5.1
Identities = 15/41 (36%), Positives = 24/41 (58%)
Query: 20 EEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEELQAGG 60
E EE ++ E E+EED ++++ E E+EE+ E E G
Sbjct: 198 ELAEEMGDDTESEDEEDGDDDQPTENEQEEQGEGEGEGQEG 238
Score = 25.3 bits (55), Expect = 9.3
Identities = 14/41 (34%), Positives = 24/41 (58%)
Query: 22 EEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEELQAGGHG 62
E EE D+ E E++E+ ++++ E E+EE+ E G G
Sbjct: 198 ELAEEMGDDTESEDEEDGDDDQPTENEQEEQGEGEGEGQEG 238
>gnl|CDD|217392 pfam03153, TFIIA, Transcription factor IIA, alpha/beta subunit.
Transcription initiation factor IIA (TFIIA) is a
heterotrimer, the three subunits being known as alpha,
beta, and gamma, in order of molecular weight. The N and
C-terminal domains of the gamma subunit are represented
in pfam02268 and pfam02751, respectively. This family
represents the precursor that yields both the alpha and
beta subunits. The TFIIA heterotrimer is an essential
general transcription initiation factor for the
expression of genes transcribed by RNA polymerase II.
Together with TFIID, TFIIA binds to the promoter region;
this is the first step in the formation of a
pre-initiation complex (PIC). Binding of the rest of the
transcription machinery follows this step. After
initiation, the PIC does not completely dissociate from
the promoter. Some components, including TFIIA, remain
attached and re-initiate a subsequent round of
transcription.
Length = 332
Score = 37.0 bits (86), Expect = 9e-04
Identities = 9/52 (17%), Positives = 30/52 (57%)
Query: 3 KREEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEE 54
KR + + + ++E + +++++ED E + D+ +++ +E+ E+ + +
Sbjct: 237 KRRTIAQIDGIDSDDEGDGSDDDDDEDAIESDLDDSDDDVSDEDGEDLFDTD 288
Score = 33.6 bits (77), Expect = 0.013
Identities = 7/38 (18%), Positives = 24/38 (63%)
Query: 18 EEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEE 55
++E + ++++DE+ E D ++ +++ +E+ E+ +
Sbjct: 250 DDEGDGSDDDDDEDAIESDLDDSDDDVSDEDGEDLFDT 287
Score = 33.6 bits (77), Expect = 0.014
Identities = 4/39 (10%), Positives = 25/39 (64%)
Query: 17 EEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEE 55
++E + +++++++ E + ++ +++ +E+ E+ + +
Sbjct: 250 DDEGDGSDDDDDEDAIESDLDDSDDDVSDEDGEDLFDTD 288
>gnl|CDD|235396 PRK05299, rpsB, 30S ribosomal protein S2; Provisional.
Length = 258
Score = 36.7 bits (86), Expect = 0.001
Identities = 21/36 (58%), Positives = 25/36 (69%)
Query: 13 EEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEE 48
E ++ E EEEEE+ EEEEE+EEEEE EE E E
Sbjct: 223 EGRQGRLAEAAEEEEEEAEEEEEEEEEEEAEEAEAE 258
Score = 36.7 bits (86), Expect = 0.001
Identities = 21/36 (58%), Positives = 25/36 (69%)
Query: 8 EEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEE 43
E ++ E EEEEEE EEE+EEEEEE+ EE E E
Sbjct: 223 EGRQGRLAEAAEEEEEEAEEEEEEEEEEEAEEAEAE 258
Score = 36.3 bits (85), Expect = 0.001
Identities = 20/34 (58%), Positives = 24/34 (70%)
Query: 2 GKREEEEEKEEEEKEEEEEEEEEEEEEDEEEEEE 35
G++ E EEE+EE EEEEEEEEEE+ EE E
Sbjct: 224 GRQGRLAEAAEEEEEEAEEEEEEEEEEEAEEAEA 257
Score = 35.9 bits (84), Expect = 0.002
Identities = 20/33 (60%), Positives = 23/33 (69%)
Query: 20 EEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEE 52
+ E E+EEEE E+EEEEEEEEE EE E E
Sbjct: 226 QGRLAEAAEEEEEEAEEEEEEEEEEEAEEAEAE 258
Score = 35.5 bits (83), Expect = 0.002
Identities = 20/33 (60%), Positives = 23/33 (69%)
Query: 18 EEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEE 50
+ E EEE+EE EEE+EEEEEEE EE E E
Sbjct: 226 QGRLAEAAEEEEEEAEEEEEEEEEEEAEEAEAE 258
Score = 35.5 bits (83), Expect = 0.003
Identities = 22/33 (66%), Positives = 23/33 (69%)
Query: 22 EEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEE 54
+ E EEEEEE EEEEEEEEEEE EE E E
Sbjct: 226 QGRLAEAAEEEEEEAEEEEEEEEEEEAEEAEAE 258
Score = 35.5 bits (83), Expect = 0.003
Identities = 20/33 (60%), Positives = 23/33 (69%)
Query: 19 EEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEE 51
+ E EE+EEE EE+EEEEEEEE EE E E
Sbjct: 226 QGRLAEAAEEEEEEAEEEEEEEEEEEAEEAEAE 258
Score = 35.1 bits (82), Expect = 0.003
Identities = 20/33 (60%), Positives = 23/33 (69%)
Query: 21 EEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEE 53
+ E +EEEEE +EEEEEEEEEE EE E E
Sbjct: 226 QGRLAEAAEEEEEEAEEEEEEEEEEEAEEAEAE 258
Score = 35.1 bits (82), Expect = 0.003
Identities = 21/33 (63%), Positives = 23/33 (69%)
Query: 23 EEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEE 55
+ E EEEEE+ EEEEEEEEEEE EE E E
Sbjct: 226 QGRLAEAAEEEEEEAEEEEEEEEEEEAEEAEAE 258
Score = 34.8 bits (81), Expect = 0.004
Identities = 20/34 (58%), Positives = 24/34 (70%)
Query: 4 REEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDE 37
R+ + EE+EEE EEEEEEEEE+E EE E E
Sbjct: 225 RQGRLAEAAEEEEEEAEEEEEEEEEEEAEEAEAE 258
Score = 34.8 bits (81), Expect = 0.005
Identities = 20/33 (60%), Positives = 23/33 (69%)
Query: 17 EEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEE 49
+ E EEEE+E EEEE+EEEEEE EE E E
Sbjct: 226 QGRLAEAAEEEEEEAEEEEEEEEEEEAEEAEAE 258
Score = 34.4 bits (80), Expect = 0.005
Identities = 20/33 (60%), Positives = 23/33 (69%)
Query: 12 EEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEE 44
+ E EEEEEE EE+EEEEEE+E EE E E
Sbjct: 226 QGRLAEAAEEEEEEAEEEEEEEEEEEAEEAEAE 258
Score = 34.0 bits (79), Expect = 0.009
Identities = 20/33 (60%), Positives = 23/33 (69%)
Query: 7 EEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEE 39
+ E +EEEEE EEEEEEE+EEE EE E E
Sbjct: 226 QGRLAEAAEEEEEEAEEEEEEEEEEEAEEAEAE 258
Score = 33.6 bits (78), Expect = 0.012
Identities = 21/33 (63%), Positives = 23/33 (69%)
Query: 3 KREEEEEKEEEEKEEEEEEEEEEEEEDEEEEEE 35
+ E EEEE+E EEEEEEEEEEE EE E E
Sbjct: 226 QGRLAEAAEEEEEEAEEEEEEEEEEEAEEAEAE 258
Score = 33.6 bits (78), Expect = 0.013
Identities = 20/33 (60%), Positives = 23/33 (69%)
Query: 2 GKREEEEEKEEEEKEEEEEEEEEEEEEDEEEEE 34
R E +EEEE+ EEEEEEEEEEE +E E E
Sbjct: 226 QGRLAEAAEEEEEEAEEEEEEEEEEEAEEAEAE 258
Score = 33.2 bits (77), Expect = 0.017
Identities = 19/33 (57%), Positives = 23/33 (69%)
Query: 6 EEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEE 38
+ E E+EEEE EEEEEEEE+EE EE + E
Sbjct: 226 QGRLAEAAEEEEEEAEEEEEEEEEEEAEEAEAE 258
Score = 32.4 bits (75), Expect = 0.027
Identities = 20/32 (62%), Positives = 23/32 (71%)
Query: 27 EEDEEEEEEDEEEEEEEEEEEEEEEEEEELQA 58
+ E E+EEEE EEEEEEEEEEE EE +A
Sbjct: 226 QGRLAEAAEEEEEEAEEEEEEEEEEEAEEAEA 257
>gnl|CDD|165442 PHA03171, PHA03171, UL37 tegument protein; Provisional.
Length = 499
Score = 37.0 bits (85), Expect = 0.001
Identities = 25/60 (41%), Positives = 31/60 (51%), Gaps = 4/60 (6%)
Query: 13 EEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEELQAGGHGIAICQCKSAK 72
E EE EEE+ + E D E EEEDEEEE E + E + E L G+A C + K
Sbjct: 81 EAGEEAEEEDNDRECPDTEAEEEDEEEEIEAPDPEVNPLDAEGLS----GLAREACDALK 136
Score = 32.0 bits (72), Expect = 0.058
Identities = 17/35 (48%), Positives = 21/35 (60%)
Query: 6 EEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEE 40
E E+ EEE + E + E EEEDEEEE E + E
Sbjct: 81 EAGEEAEEEDNDRECPDTEAEEEDEEEEIEAPDPE 115
Score = 31.2 bits (70), Expect = 0.086
Identities = 15/32 (46%), Positives = 19/32 (59%)
Query: 4 REEEEEKEEEEKEEEEEEEEEEEEEDEEEEEE 35
E EEE + E + E EEE+EEEE E + E
Sbjct: 84 EEAEEEDNDRECPDTEAEEEDEEEEIEAPDPE 115
Score = 31.2 bits (70), Expect = 0.10
Identities = 14/37 (37%), Positives = 23/37 (62%)
Query: 1 MGKREEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDE 37
+ EE E+E+ ++E + E EEE+EE+E E + E
Sbjct: 79 FAEAGEEAEEEDNDRECPDTEAEEEDEEEEIEAPDPE 115
Score = 31.2 bits (70), Expect = 0.10
Identities = 16/35 (45%), Positives = 22/35 (62%)
Query: 5 EEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEE 39
E EE EEE+ + E + E EEE++EEE E + E
Sbjct: 81 EAGEEAEEEDNDRECPDTEAEEEDEEEEIEAPDPE 115
Score = 30.8 bits (69), Expect = 0.15
Identities = 15/35 (42%), Positives = 22/35 (62%)
Query: 8 EEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEE 42
E EE E+E+ + E + E E+E+EEEE E + E
Sbjct: 81 EAGEEAEEEDNDRECPDTEAEEEDEEEEIEAPDPE 115
Score = 29.6 bits (66), Expect = 0.32
Identities = 15/35 (42%), Positives = 20/35 (57%)
Query: 4 REEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEE 38
EE +EE+ E + E EEE+E+EE E D E
Sbjct: 81 EAGEEAEEEDNDRECPDTEAEEEDEEEEIEAPDPE 115
Score = 27.7 bits (61), Expect = 1.3
Identities = 17/40 (42%), Positives = 22/40 (55%), Gaps = 3/40 (7%)
Query: 2 GKREEEEEKEEEE---KEEEEEEEEEEEEEDEEEEEEDEE 38
G+ EEE+ + E + EEE+EEEE E D E D E
Sbjct: 83 GEEAEEEDNDRECPDTEAEEEDEEEEIEAPDPEVNPLDAE 122
Score = 27.0 bits (59), Expect = 3.1
Identities = 13/35 (37%), Positives = 22/35 (62%)
Query: 7 EEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEE 41
E +E EE++ + E + E EE++EEEE + + E
Sbjct: 81 EAGEEAEEEDNDRECPDTEAEEEDEEEEIEAPDPE 115
>gnl|CDD|219408 pfam07423, DUF1510, Protein of unknown function (DUF1510). This
family consists of several hypothetical bacterial
proteins of around 200 residues in length. The function
of this family is unknown.
Length = 214
Score = 36.6 bits (85), Expect = 0.001
Identities = 24/51 (47%), Positives = 38/51 (74%)
Query: 5 EEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEE 55
E +EE++E E++E++ + E+EDEE EEE+EEE+EE +E E+E EE+
Sbjct: 64 EVKEEEKEAANSEDKEDKGDAEKEDEESEEENEEEDEESSDENEKETEEKT 114
Score = 36.3 bits (84), Expect = 0.001
Identities = 25/54 (46%), Positives = 36/54 (66%)
Query: 2 GKREEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEE 55
K EE+E E+KE++ + E+E+EE +EE EEEDEE +E E+E EE+ E
Sbjct: 65 VKEEEKEAANSEDKEDKGDAEKEDEESEEENEEEDEESSDENEKETEEKTESNV 118
Score = 35.9 bits (83), Expect = 0.002
Identities = 23/53 (43%), Positives = 38/53 (71%)
Query: 3 KREEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEE 55
+ +EEEKE E++E++ + E+E++E EEE +EE+EE +E E+E EE+ E
Sbjct: 63 EEVKEEEKEAANSEDKEDKGDAEKEDEESEEENEEEDEESSDENEKETEEKTE 115
Score = 33.9 bits (78), Expect = 0.010
Identities = 22/50 (44%), Positives = 34/50 (68%)
Query: 5 EEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEE 54
E++E + + ++E+EE EEE EEEDEE +E+E+E EE+ E E+E
Sbjct: 75 SEDKEDKGDAEKEDEESEEENEEEDEESSDENEKETEEKTESNVEKEITN 124
Score = 33.6 bits (77), Expect = 0.011
Identities = 22/56 (39%), Positives = 39/56 (69%)
Query: 3 KREEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEELQA 58
++E ++ ++E E EE +EEE+E + E++E+ + E+E+EE EEE EEE+E +
Sbjct: 48 EQEAKKSDDQETAEIEEVKEEEKEAANSEDKEDKGDAEKEDEESEEENEEEDEESS 103
Score = 32.8 bits (75), Expect = 0.020
Identities = 24/54 (44%), Positives = 35/54 (64%)
Query: 2 GKREEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEE 55
+E E EE ++EE+E E++E+ + E+EDEE EEE EEE+EE +E E
Sbjct: 54 SDDQETAEIEEVKEEEKEAANSEDKEDKGDAEKEDEESEEENEEEDEESSDENE 107
Score = 32.8 bits (75), Expect = 0.021
Identities = 23/58 (39%), Positives = 36/58 (62%)
Query: 3 KREEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEELQAGG 60
E++E+K + EKE+EE EEE EEE++E +E ++E EE+ E E+E + G
Sbjct: 74 NSEDKEDKGDAEKEDEESEEENEEEDEESSDENEKETEEKTESNVEKEITNPSWKPVG 131
Score = 32.0 bits (73), Expect = 0.044
Identities = 21/51 (41%), Positives = 36/51 (70%)
Query: 5 EEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEE 55
+E+E K+ +++E E EE +EEE++ E+ E++ + E+E+EE EEE EE
Sbjct: 47 DEQEAKKSDDQETAEIEEVKEEEKEAANSEDKEDKGDAEKEDEESEEENEE 97
Score = 30.1 bits (68), Expect = 0.19
Identities = 18/54 (33%), Positives = 36/54 (66%)
Query: 2 GKREEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEE 55
+ +E+E ++ +++E E EE +E+E+E E++E++ + E+E+EE EEE
Sbjct: 41 SDQAAADEQEAKKSDDQETAEIEEVKEEEKEAANSEDKEDKGDAEKEDEESEEE 94
Score = 29.7 bits (67), Expect = 0.23
Identities = 21/54 (38%), Positives = 37/54 (68%)
Query: 2 GKREEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEE 55
E+E +K ++++ E EE +EEE+E E+++++ + E+E+EE EEE EEE
Sbjct: 45 AADEQEAKKSDDQETAEIEEVKEEEKEAANSEDKEDKGDAEKEDEESEEENEEE 98
Score = 28.9 bits (65), Expect = 0.46
Identities = 19/50 (38%), Positives = 31/50 (62%)
Query: 2 GKREEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEE 51
K ++ + ++E+E+ EEE EEE+EE DE E+E +E+ E E+E
Sbjct: 77 DKEDKGDAEKEDEESEEENEEEDEESSDENEKETEEKTESNVEKEITNPS 126
Score = 28.5 bits (64), Expect = 0.56
Identities = 17/54 (31%), Positives = 36/54 (66%)
Query: 2 GKREEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEE 55
+ +++E +K +++E E EE ++EE+E + E++E++ + E+E+EE EE
Sbjct: 40 PSDQAAADEQEAKKSDDQETAEIEEVKEEEKEAANSEDKEDKGDAEKEDEESEE 93
Score = 28.2 bits (63), Expect = 0.89
Identities = 18/54 (33%), Positives = 34/54 (62%)
Query: 5 EEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEELQA 58
++ E+E K+ +++E E EE EEE+E E++E++ + E+E+EE E +
Sbjct: 42 DQAAADEQEAKKSDDQETAEIEEVKEEEKEAANSEDKEDKGDAEKEDEESEEEN 95
>gnl|CDD|226920 COG4547, CobT, Cobalamin biosynthesis protein CobT
(nicotinate-mononucleotide:5, 6-dimethylbenzimidazole
phosphoribosyltransferase) [Coenzyme metabolism].
Length = 620
Score = 36.4 bits (84), Expect = 0.002
Identities = 18/49 (36%), Positives = 27/49 (55%)
Query: 5 EEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEE 53
E+ E EE + +E EE+E E D E EE + + E E+ E +E +E
Sbjct: 245 EDSEAGREESEGSDESEEDEAEATDGEGEEGEMDAAEASEDSESDESDE 293
Score = 36.0 bits (83), Expect = 0.002
Identities = 17/57 (29%), Positives = 32/57 (56%)
Query: 2 GKREEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEELQA 58
G E+ +E++ ++ + + E+ E E+ E +E EE+E E + E EE E + +A
Sbjct: 226 GIEEDADEEDGDDDQPDNNEDSEAGREESEGSDESEEDEAEATDGEGEEGEMDAAEA 282
Score = 36.0 bits (83), Expect = 0.002
Identities = 20/58 (34%), Positives = 33/58 (56%)
Query: 1 MGKREEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEELQA 58
G EE+ +EE+ ++++ + E+ E EE E +E EE+E E + E EE E+ A
Sbjct: 222 TGDDGIEEDADEEDGDDDQPDNNEDSEAGREESEGSDESEEDEAEATDGEGEEGEMDA 279
Score = 36.0 bits (83), Expect = 0.002
Identities = 19/49 (38%), Positives = 27/49 (55%)
Query: 6 EEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEE 54
E+ E EE E +E EE+E E + E EE E + E E+ E +E +E
Sbjct: 245 EDSEAGREESEGSDESEEDEAEATDGEGEEGEMDAAEASEDSESDESDE 293
Score = 36.0 bits (83), Expect = 0.002
Identities = 19/51 (37%), Positives = 29/51 (56%)
Query: 5 EEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEE 55
+ E +EE E +E EE+E E + E EE E + E E+ E +E +E+ E
Sbjct: 246 DSEAGREESEGSDESEEDEAEATDGEGEEGEMDAAEASEDSESDESDEDTE 296
Score = 35.6 bits (82), Expect = 0.003
Identities = 18/54 (33%), Positives = 28/54 (51%)
Query: 2 GKREEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEE 55
+ E +E E +E EE+E E + + EE E D E E+ E +E +E+ E
Sbjct: 244 NEDSEAGREESEGSDESEEDEAEATDGEGEEGEMDAAEASEDSESDESDEDTET 297
Score = 34.4 bits (79), Expect = 0.007
Identities = 16/52 (30%), Positives = 27/52 (51%)
Query: 4 REEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEE 55
E+ + E+ E +E EE+E E + E E+ E + E E+ E +E +E
Sbjct: 242 DNNEDSEAGREESEGSDESEEDEAEATDGEGEEGEMDAAEASEDSESDESDE 293
Score = 34.0 bits (78), Expect = 0.009
Identities = 19/55 (34%), Positives = 30/55 (54%)
Query: 4 REEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEELQA 58
REE E +E E++E E + E EE + + E E+ E +E +E+ E E+ A
Sbjct: 251 REESEGSDESEEDEAEATDGEGEEGEMDAAEASEDSESDESDEDTETPGEDARPA 305
Score = 34.0 bits (78), Expect = 0.010
Identities = 16/52 (30%), Positives = 26/52 (50%)
Query: 6 EEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEELQ 57
++++ + E E EE E +E EE+E E + E EE E + E E+
Sbjct: 237 DDDQPDNNEDSEAGREESEGSDESEEDEAEATDGEGEEGEMDAAEASEDSES 288
Score = 33.3 bits (76), Expect = 0.016
Identities = 18/51 (35%), Positives = 27/51 (52%)
Query: 5 EEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEE 55
E+ ++ + + E+ E EE E DE EE+E E + E EE E + E E
Sbjct: 234 EDGDDDQPDNNEDSEAGREESEGSDESEEDEAEATDGEGEEGEMDAAEASE 284
Score = 32.5 bits (74), Expect = 0.033
Identities = 16/55 (29%), Positives = 30/55 (54%)
Query: 1 MGKREEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEE 55
M + E+ ++ EE+ +EE+ +++ + E+ E EE E +E EE+E E
Sbjct: 212 MLGSMDMAEETGDDGIEEDADEEDGDDDQPDNNEDSEAGREESEGSDESEEDEAE 266
Score = 31.4 bits (71), Expect = 0.097
Identities = 18/51 (35%), Positives = 26/51 (50%)
Query: 2 GKREEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEE 52
G+ E E E EE E E + E EE E + E ++ E +E +E+ E E
Sbjct: 250 GREESEGSDESEEDEAEATDGEGEEGEMDAAEASEDSESDESDEDTETPGE 300
Score = 30.2 bits (68), Expect = 0.24
Identities = 15/58 (25%), Positives = 28/58 (48%)
Query: 4 REEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEELQAGGH 61
R+ + E+ ++ EE+ +EED ++++ D E+ E EE E +E E
Sbjct: 210 RDMLGSMDMAEETGDDGIEEDADEEDGDDDQPDNNEDSEAGREESEGSDESEEDEAEA 267
Score = 29.4 bits (66), Expect = 0.38
Identities = 14/52 (26%), Positives = 26/52 (50%)
Query: 4 REEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEE 55
R + + EE ++ EE+ DEE+ ++D+ + E+ E EE E +
Sbjct: 207 RVVRDMLGSMDMAEETGDDGIEEDADEEDGDDDQPDNNEDSEAGREESEGSD 258
>gnl|CDD|233467 TIGR01554, major_cap_HK97, phage major capsid protein, HK97
family. This model family represents the major capsid
protein component of the heads (capsids) of
bacteriophage HK97, phi-105, P27, and related phage.
This model represents one of several analogous families
lacking detectable sequence similarity. The gene
encoding this component is typically located in an
operon encoding the small and large terminase subunits,
the portal protein and the prohead or maturation
protease [Mobile and extrachromosomal element
functions, Prophage functions].
Length = 384
Score = 36.2 bits (84), Expect = 0.002
Identities = 19/55 (34%), Positives = 30/55 (54%)
Query: 6 EEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEELQAGG 60
+E ++ E E+ E EEE+ E D +EE D+ + E + EE +E E + A G
Sbjct: 12 AKELRKLTEDEKLAEAEEEKAEYDALKEEIDKLDAEIDRLEELLDELEAKPAASG 66
Score = 36.2 bits (84), Expect = 0.002
Identities = 18/55 (32%), Positives = 29/55 (52%)
Query: 4 REEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEELQA 58
+E E E KE + E+E+ E EEE+ E + +EE ++ + E + EEL
Sbjct: 2 KELREALAELAKELRKLTEDEKLAEAEEEKAEYDALKEEIDKLDAEIDRLEELLD 56
Score = 34.6 bits (80), Expect = 0.005
Identities = 19/62 (30%), Positives = 30/62 (48%)
Query: 3 KREEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEELQAGGHG 62
+E + E+E+ E EEE+ E + EE ++ D E + EE +E E + GG G
Sbjct: 12 AKELRKLTEDEKLAEAEEEKAEYDALKEEIDKLDAEIDRLEELLDELEAKPAASGEGGGG 71
Query: 63 IA 64
Sbjct: 72 EE 73
Score = 34.6 bits (80), Expect = 0.006
Identities = 16/54 (29%), Positives = 29/54 (53%)
Query: 5 EEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEELQA 58
E +E + ++E+ E EEE+ E + +EE ++ + E + EE +E E A
Sbjct: 10 ELAKELRKLTEDEKLAEAEEEKAEYDALKEEIDKLDAEIDRLEELLDELEAKPA 63
Score = 34.6 bits (80), Expect = 0.006
Identities = 20/57 (35%), Positives = 28/57 (49%)
Query: 2 GKREEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEELQA 58
K E EE++ E +EE ++ + E D EE DE E + E EEEE +A
Sbjct: 22 EKLAEAEEEKAEYDALKEEIDKLDAEIDRLEELLDELEAKPAASGEGGGGEEEEEEA 78
Score = 33.9 bits (78), Expect = 0.010
Identities = 17/60 (28%), Positives = 31/60 (51%)
Query: 3 KREEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEELQAGGHG 62
+ +E K E+++ E EEE+ E + +EE + + E + EE +E E + +G G
Sbjct: 10 ELAKELRKLTEDEKLAEAEEEKAEYDALKEEIDKLDAEIDRLEELLDELEAKPAASGEGG 69
Score = 33.1 bits (76), Expect = 0.019
Identities = 16/62 (25%), Positives = 29/62 (46%)
Query: 4 REEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEELQAGGHGI 63
R+ E+++ E EEE+ E + +EE ++ + E + EE +E E + E G
Sbjct: 16 RKLTEDEKLAEAEEEKAEYDALKEEIDKLDAEIDRLEELLDELEAKPAASGEGGGGEEEE 75
Query: 64 AI 65
Sbjct: 76 EE 77
Score = 32.3 bits (74), Expect = 0.033
Identities = 17/59 (28%), Positives = 28/59 (47%)
Query: 3 KREEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEELQAGGH 61
++ E + +EE + + E + EE DE E + E EEEEEE + E + +
Sbjct: 30 EKAEYDALKEEIDKLDAEIDRLEELLDELEAKPAASGEGGGGEEEEEEAKAEAAEFRAY 88
Score = 31.9 bits (73), Expect = 0.042
Identities = 14/53 (26%), Positives = 28/53 (52%)
Query: 6 EEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEELQA 58
+E +E + +E + E+E+ E EEE E + +EE ++ + E + L+
Sbjct: 1 LKELREALAELAKELRKLTEDEKLAEAEEEKAEYDALKEEIDKLDAEIDRLEE 53
Score = 31.6 bits (72), Expect = 0.063
Identities = 19/56 (33%), Positives = 29/56 (51%)
Query: 3 KREEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEELQA 58
EEE+ E + +EE ++ + E + EE +E E + E EEEEEE +A
Sbjct: 25 AEAEEEKAEYDALKEEIDKLDAEIDRLEELLDELEAKPAASGEGGGGEEEEEEAKA 80
Score = 30.0 bits (68), Expect = 0.22
Identities = 13/54 (24%), Positives = 27/54 (50%)
Query: 5 EEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEELQA 58
+E + E +E + E+E+ E EEE+ E + +EE ++ + E + +
Sbjct: 1 LKELREALAELAKELRKLTEDEKLAEAEEEKAEYDALKEEIDKLDAEIDRLEEL 54
>gnl|CDD|239286 cd02988, Phd_like_VIAF, Phosducin (Phd)-like family, Viral
inhibitor of apoptosis (IAP)-associated factor (VIAF)
subfamily; VIAF is a Phd-like protein that functions in
caspase activation during apoptosis. It was identified
as an IAP binding protein through a screen of a human
B-cell library using a prototype IAP. VIAF lacks a
consensus IAP binding motif and while it does not
function as an IAP antagonist, it still plays a
regulatory role in the complete activation of caspases.
VIAF itself is a substrate for IAP-mediated
ubiquitination, suggesting that it may be a target of
IAPs in the prevention of cell death. The similarity of
VIAF to Phd points to a potential role distinct from
apoptosis regulation. Phd functions as a cytosolic
regulator of G protein by specifically binding to G
protein betagamma (Gbg)-subunits. The C-terminal domain
of Phd adopts a thioredoxin fold, but it does not
contain a CXXC motif. Phd interacts with G protein beta
mostly through the N-terminal helical domain.
Length = 192
Score = 35.7 bits (83), Expect = 0.002
Identities = 17/46 (36%), Positives = 24/46 (52%)
Query: 9 EKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEE 54
K KEEEEE E +E E E + +E +EE +EEE++
Sbjct: 15 PKPPSPKEEEEEALELAIQEAHENALEKKLLDELDEELDEEEDDRF 60
Score = 34.5 bits (80), Expect = 0.005
Identities = 17/49 (34%), Positives = 27/49 (55%)
Query: 5 EEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEE 53
+ +EEE+E E +E E E++ DE +EE +EEE++ EE
Sbjct: 15 PKPPSPKEEEEEALELAIQEAHENALEKKLLDELDEELDEEEDDRFLEE 63
Score = 33.4 bits (77), Expect = 0.012
Identities = 18/48 (37%), Positives = 26/48 (54%)
Query: 3 KREEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEE 50
K +E+EEE E +E E E + +E DEE +EEE++ EE
Sbjct: 16 KPPSPKEEEEEALELAIQEAHENALEKKLLDELDEELDEEEDDRFLEE 63
Score = 32.2 bits (74), Expect = 0.030
Identities = 15/44 (34%), Positives = 25/44 (56%)
Query: 12 EEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEE 55
+ +EEEEE E +E E E++ +E +EE +EEE++
Sbjct: 15 PKPPSPKEEEEEALELAIQEAHENALEKKLLDELDEELDEEEDD 58
Score = 31.9 bits (73), Expect = 0.041
Identities = 15/48 (31%), Positives = 27/48 (56%)
Query: 4 REEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEE 51
+ ++EEEE E +E E +++ +E +EE +EEE++ EE
Sbjct: 16 KPPSPKEEEEEALELAIQEAHENALEKKLLDELDEELDEEEDDRFLEE 63
Score = 26.8 bits (60), Expect = 2.1
Identities = 15/49 (30%), Positives = 24/49 (48%), Gaps = 6/49 (12%)
Query: 16 EEEEEEEEEEEEEDEEEEEEDEEEEEEE------EEEEEEEEEEEELQA 58
+ +EEEEE E +E E E+ +EE +EEE++ L+
Sbjct: 15 PKPPSPKEEEEEALELAIQEAHENALEKKLLDELDEELDEEEDDRFLEE 63
>gnl|CDD|240331 PTZ00254, PTZ00254, 40S ribosomal protein SA; Provisional.
Length = 249
Score = 35.8 bits (83), Expect = 0.002
Identities = 13/42 (30%), Positives = 18/42 (42%)
Query: 10 KEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEE 51
++ EE EE+EE E ++ E EE EE E
Sbjct: 205 RDPEEAEEKEEAAAETAGVEDAAAAAAEAEEGEEWVAAANNE 246
Score = 34.6 bits (80), Expect = 0.005
Identities = 13/41 (31%), Positives = 17/41 (41%)
Query: 12 EEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEE 52
+ E+ EE+EE E E+ E EE EE E
Sbjct: 206 DPEEAEEKEEAAAETAGVEDAAAAAAEAEEGEEWVAAANNE 246
Score = 34.3 bits (79), Expect = 0.007
Identities = 13/41 (31%), Positives = 17/41 (41%)
Query: 6 EEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEE 46
+ EE EE+E+ E E+ E EE EE E
Sbjct: 206 DPEEAEEKEEAAAETAGVEDAAAAAAEAEEGEEWVAAANNE 246
Score = 34.3 bits (79), Expect = 0.008
Identities = 13/42 (30%), Positives = 18/42 (42%)
Query: 4 REEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEE 45
R+ EE +E+EE E E+ E EE +E E
Sbjct: 205 RDPEEAEEKEEAAAETAGVEDAAAAAAEAEEGEEWVAAANNE 246
Score = 33.5 bits (77), Expect = 0.012
Identities = 13/36 (36%), Positives = 16/36 (44%)
Query: 19 EEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEE 54
+ EE EE+EE E E+ E EE EE
Sbjct: 206 DPEEAEEKEEAAAETAGVEDAAAAAAEAEEGEEWVA 241
Score = 33.5 bits (77), Expect = 0.012
Identities = 12/41 (29%), Positives = 17/41 (41%)
Query: 15 KEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEE 55
++ EE EE+EE + E+ E EE EE
Sbjct: 205 RDPEEAEEKEEAAAETAGVEDAAAAAAEAEEGEEWVAAANN 245
Score = 33.1 bits (76), Expect = 0.016
Identities = 12/40 (30%), Positives = 18/40 (45%)
Query: 23 EEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEELQAGGHG 62
+ EE E++EE + E+ E EE EE A +
Sbjct: 206 DPEEAEEKEEAAAETAGVEDAAAAAAEAEEGEEWVAAANN 245
Score = 32.7 bits (75), Expect = 0.023
Identities = 12/42 (28%), Positives = 17/42 (40%)
Query: 3 KREEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEE 44
+ EE E++EE E E+ E EE E+ E
Sbjct: 205 RDPEEAEEKEEAAAETAGVEDAAAAAAEAEEGEEWVAAANNE 246
Score = 32.3 bits (74), Expect = 0.028
Identities = 13/41 (31%), Positives = 17/41 (41%)
Query: 9 EKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEE 49
+ EE E++EE E E+ E EE EE E
Sbjct: 206 DPEEAEEKEEAAAETAGVEDAAAAAAEAEEGEEWVAAANNE 246
Score = 31.6 bits (72), Expect = 0.058
Identities = 14/41 (34%), Positives = 17/41 (41%)
Query: 14 EKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEE 54
+ EE EE+EE E E+ E EE EE E
Sbjct: 206 DPEEAEEKEEAAAETAGVEDAAAAAAEAEEGEEWVAAANNE 246
Score = 31.6 bits (72), Expect = 0.064
Identities = 13/41 (31%), Positives = 17/41 (41%)
Query: 13 EEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEE 53
+ +E EE+EE E E+ E EE EE E
Sbjct: 206 DPEEAEEKEEAAAETAGVEDAAAAAAEAEEGEEWVAAANNE 246
Score = 31.6 bits (72), Expect = 0.066
Identities = 13/40 (32%), Positives = 17/40 (42%)
Query: 21 EEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEELQAGG 60
+ EE EE++E E E+ E EE EE A
Sbjct: 206 DPEEAEEKEEAAAETAGVEDAAAAAAEAEEGEEWVAAANN 245
Score = 31.2 bits (71), Expect = 0.075
Identities = 14/40 (35%), Positives = 16/40 (40%)
Query: 16 EEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEE 55
EE EE+EE E E+ E EE EE E
Sbjct: 207 PEEAEEKEEAAAETAGVEDAAAAAAEAEEGEEWVAAANNE 246
Score = 31.2 bits (71), Expect = 0.082
Identities = 13/41 (31%), Positives = 17/41 (41%)
Query: 8 EEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEE 48
+ +E EEKEE E E+ E +E EE E
Sbjct: 206 DPEEAEEKEEAAAETAGVEDAAAAAAEAEEGEEWVAAANNE 246
>gnl|CDD|235549 PRK05658, PRK05658, RNA polymerase sigma factor RpoD; Validated.
Length = 619
Score = 35.9 bits (84), Expect = 0.002
Identities = 14/45 (31%), Positives = 24/45 (53%)
Query: 13 EEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEELQ 57
EE+ E EE +++++EEEEE+E ++ +E EL
Sbjct: 173 FVDPNAEEDPAHVGSELEELDDDEDEEEEEDENDDSLAADESELP 217
Score = 35.2 bits (82), Expect = 0.003
Identities = 14/48 (29%), Positives = 27/48 (56%)
Query: 9 EKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEEL 56
+ +E+ E EE D++E+EE+EE+E ++ +E E E++
Sbjct: 173 FVDPNAEEDPAHVGSELEELDDDEDEEEEEDENDDSLAADESELPEKV 220
Score = 34.4 bits (80), Expect = 0.007
Identities = 15/47 (31%), Positives = 25/47 (53%)
Query: 7 EEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEE 53
+ EE E EE ++DE+EEEE++E ++ +E E E+
Sbjct: 173 FVDPNAEEDPAHVGSELEELDDDEDEEEEEDENDDSLAADESELPEK 219
Score = 34.4 bits (80), Expect = 0.007
Identities = 14/39 (35%), Positives = 23/39 (58%)
Query: 20 EEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEELQA 58
+ EE+ E EE +++E+EEEEE+E ++ L A
Sbjct: 173 FVDPNAEEDPAHVGSELEELDDDEDEEEEEDENDDSLAA 211
Score = 34.0 bits (79), Expect = 0.009
Identities = 15/51 (29%), Positives = 26/51 (50%)
Query: 4 REEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEE 54
+ E E +E + + EED + EE +++E+EEEEE+E +
Sbjct: 156 YDRLENGERRLRELIDGFVDPNAEEDPAHVGSELEELDDDEDEEEEEDEND 206
Score = 34.0 bits (79), Expect = 0.009
Identities = 15/47 (31%), Positives = 26/47 (55%)
Query: 6 EEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEE 52
+ EE+ E EE +++++EEEEEDE ++ +E E E+
Sbjct: 173 FVDPNAEEDPAHVGSELEELDDDEDEEEEEDENDDSLAADESELPEK 219
Score = 34.0 bits (79), Expect = 0.011
Identities = 15/49 (30%), Positives = 26/49 (53%)
Query: 3 KREEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEE 51
+ EE+ E EE +++EDEEEEE++ ++ +E E E+
Sbjct: 171 DGFVDPNAEEDPAHVGSELEELDDDEDEEEEEDENDDSLAADESELPEK 219
Score = 32.8 bits (76), Expect = 0.021
Identities = 15/50 (30%), Positives = 27/50 (54%)
Query: 8 EEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEELQ 57
E++ E EE +D+E+EEE+E+E ++ +E E E+ L+
Sbjct: 173 FVDPNAEEDPAHVGSELEELDDDEDEEEEEDENDDSLAADESELPEKVLE 222
Score = 32.8 bits (76), Expect = 0.027
Identities = 15/48 (31%), Positives = 25/48 (52%)
Query: 8 EEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEE 55
+ E E+ E + + EE+ E EE +++E+EEEEE+E
Sbjct: 157 DRLENGERRLRELIDGFVDPNAEEDPAHVGSELEELDDDEDEEEEEDE 204
Score = 29.4 bits (67), Expect = 0.43
Identities = 11/38 (28%), Positives = 18/38 (47%)
Query: 16 EEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEE 53
EE + ++ E+E + + DE+ EEE E E
Sbjct: 61 EEAPDADDLLLAENEADAQTDEDAEEEAAAALSSVESE 98
Score = 28.6 bits (65), Expect = 0.72
Identities = 10/39 (25%), Positives = 17/39 (43%)
Query: 18 EEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEEL 56
EE + ++ E E + +E+ EEE E E+
Sbjct: 61 EEAPDADDLLLAENEADAQTDEDAEEEAAAALSSVESEI 99
Score = 28.6 bits (65), Expect = 0.78
Identities = 9/38 (23%), Positives = 17/38 (44%)
Query: 17 EEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEE 54
EE + ++ + E + + +E+ EEE E E
Sbjct: 61 EEAPDADDLLLAENEADAQTDEDAEEEAAAALSSVESE 98
Score = 27.8 bits (63), Expect = 1.1
Identities = 10/38 (26%), Positives = 17/38 (44%)
Query: 14 EKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEE 51
E+ + ++ E E + + +ED EEE E E
Sbjct: 61 EEAPDADDLLLAENEADAQTDEDAEEEAAAALSSVESE 98
Score = 27.5 bits (62), Expect = 1.7
Identities = 15/53 (28%), Positives = 30/53 (56%)
Query: 5 EEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEELQ 57
+ EE ++E+EEEEE+E +D +E E E+ E+ + ++ ++L+
Sbjct: 183 AHVGSELEELDDDEDEEEEEDENDDSLAADESELPEKVLEKFKALAKQYKKLR 235
Score = 27.5 bits (62), Expect = 1.9
Identities = 11/38 (28%), Positives = 17/38 (44%)
Query: 13 EEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEE 50
EE + ++ E E D + +E+ EEE E E
Sbjct: 61 EEAPDADDLLLAENEADAQTDEDAEEEAAAALSSVESE 98
Score = 27.1 bits (61), Expect = 2.5
Identities = 11/40 (27%), Positives = 18/40 (45%)
Query: 20 EEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEELQAG 59
EE + ++ E E D + +E+ EEE E + G
Sbjct: 61 EEAPDADDLLLAENEADAQTDEDAEEEAAAALSSVESEIG 100
Score = 27.1 bits (61), Expect = 2.7
Identities = 9/38 (23%), Positives = 16/38 (42%)
Query: 8 EEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEE 45
EE + + E E + + +++ EEE E E
Sbjct: 61 EEAPDADDLLLAENEADAQTDEDAEEEAAAALSSVESE 98
Score = 26.7 bits (60), Expect = 3.0
Identities = 9/38 (23%), Positives = 15/38 (39%)
Query: 11 EEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEE 48
EE ++ E E + +E+ E+E E E
Sbjct: 61 EEAPDADDLLLAENEADAQTDEDAEEEAAAALSSVESE 98
Score = 26.7 bits (60), Expect = 3.1
Identities = 10/38 (26%), Positives = 16/38 (42%)
Query: 9 EKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEE 46
E+ + + E E + + DE+ EEE E E
Sbjct: 61 EEAPDADDLLLAENEADAQTDEDAEEEAAAALSSVESE 98
Score = 26.3 bits (59), Expect = 4.4
Identities = 9/38 (23%), Positives = 17/38 (44%)
Query: 5 EEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEE 42
EE + ++ E E + + +E+ +EE E E
Sbjct: 61 EEAPDADDLLLAENEADAQTDEDAEEEAAAALSSVESE 98
Score = 25.9 bits (58), Expect = 7.0
Identities = 10/38 (26%), Positives = 16/38 (42%)
Query: 6 EEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEE 43
EE ++ E E + + +E+ EEE E E
Sbjct: 61 EEAPDADDLLLAENEADAQTDEDAEEEAAAALSSVESE 98
>gnl|CDD|235548 PRK05657, PRK05657, RNA polymerase sigma factor RpoS; Validated.
Length = 325
Score = 35.7 bits (83), Expect = 0.002
Identities = 11/51 (21%), Positives = 21/51 (41%)
Query: 8 EEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEELQA 58
K + E+ + +E E DE+ E+E + + EEE + +
Sbjct: 2 TLKVHDLNEDADFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVL 52
Score = 33.0 bits (76), Expect = 0.020
Identities = 7/48 (14%), Positives = 21/48 (43%)
Query: 7 EEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEE 54
+ + ++ + +E E +++ EE+ + + EEE + +
Sbjct: 2 TLKVHDLNEDADFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQ 49
Score = 33.0 bits (76), Expect = 0.023
Identities = 10/48 (20%), Positives = 19/48 (39%)
Query: 6 EEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEE 53
+ + E + +E E +E EEE + + EEE + +
Sbjct: 2 TLKVHDLNEDADFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQ 49
Score = 31.8 bits (73), Expect = 0.044
Identities = 10/48 (20%), Positives = 20/48 (41%)
Query: 5 EEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEE 52
+ E+ + +E E +E+ EEE + + EEE + +
Sbjct: 2 TLKVHDLNEDADFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQ 49
Score = 31.8 bits (73), Expect = 0.051
Identities = 13/46 (28%), Positives = 22/46 (47%)
Query: 16 EEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEELQAGGH 61
+ + E+ + DE E +E+ EEE + + EEEL + G
Sbjct: 2 TLKVHDLNEDADFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGA 47
Score = 30.3 bits (69), Expect = 0.16
Identities = 9/43 (20%), Positives = 18/43 (41%)
Query: 4 REEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEE 46
E+ +E E +E+ EEE + + +EE + +
Sbjct: 7 DLNEDADFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQ 49
Score = 30.3 bits (69), Expect = 0.19
Identities = 9/45 (20%), Positives = 20/45 (44%)
Query: 3 KREEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEE 47
+ E+ + +E E +E+ EE+ + + EEE + +
Sbjct: 5 VHDLNEDADFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQ 49
Score = 29.9 bits (68), Expect = 0.22
Identities = 9/46 (19%), Positives = 20/46 (43%)
Query: 3 KREEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEE 48
K + E + ++ E +E+ E+E + + EEE + +
Sbjct: 4 KVHDLNEDADFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQ 49
>gnl|CDD|235401 PRK05306, infB, translation initiation factor IF-2; Validated.
Length = 746
Score = 35.6 bits (83), Expect = 0.003
Identities = 20/54 (37%), Positives = 25/54 (46%)
Query: 5 EEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEELQA 58
EEE KEE ++E EEE + E EE E EE+ + E EE E
Sbjct: 40 EEEARKEEAKREAEEEAKAEAEEAAAAEAEEEAKAEAAAAAPAEEAAEAAAAAE 93
Score = 35.2 bits (82), Expect = 0.003
Identities = 22/54 (40%), Positives = 27/54 (50%)
Query: 5 EEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEELQA 58
EEEE ++EE K E EEE + E EE E E+E + E EE E A
Sbjct: 39 EEEEARKEEAKREAEEEAKAEAEEAAAAEAEEEAKAEAAAAAPAEEAAEAAAAA 92
Score = 34.4 bits (80), Expect = 0.007
Identities = 17/56 (30%), Positives = 24/56 (42%)
Query: 3 KREEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEELQA 58
++EE + + EEE + E EE E E+E + E EE E E A
Sbjct: 44 RKEEAKREAEEEAKAEAEEAAAAEAEEEAKAEAAAAAPAEEAAEAAAAAEAAARPA 99
>gnl|CDD|237799 PRK14715, PRK14715, DNA polymerase II large subunit; Provisional.
Length = 1627
Score = 35.6 bits (82), Expect = 0.003
Identities = 21/45 (46%), Positives = 30/45 (66%)
Query: 10 KEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEE 54
KE +EK+EE++EE+ EE + EE +EE EEEE+ E E+ E
Sbjct: 277 KELKEKKEEKDEEKSEEVKTEEVDEEFEEEEKGFYYELYEKVNIE 321
Score = 35.2 bits (81), Expect = 0.004
Identities = 18/42 (42%), Positives = 29/42 (69%)
Query: 17 EEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEELQA 58
E++EE++EE+ E+ + EE DEE EEEE+ E E+ ++A
Sbjct: 281 EKKEEKDEEKSEEVKTEEVDEEFEEEEKGFYYELYEKVNIEA 322
Score = 34.8 bits (80), Expect = 0.006
Identities = 18/41 (43%), Positives = 29/41 (70%)
Query: 15 KEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEE 55
KE +E++EE++EE+ EE + E+ +EE EEEE+ E E+
Sbjct: 277 KELKEKKEEKDEEKSEEVKTEEVDEEFEEEEKGFYYELYEK 317
Score = 34.1 bits (78), Expect = 0.011
Identities = 17/41 (41%), Positives = 27/41 (65%)
Query: 6 EEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEE 46
E++E+++EEK EE + EE +EE +EEE+ E E+ E
Sbjct: 281 EKKEEKDEEKSEEVKTEEVDEEFEEEEKGFYYELYEKVNIE 321
Score = 32.5 bits (74), Expect = 0.039
Identities = 18/41 (43%), Positives = 27/41 (65%)
Query: 5 EEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEE 45
E++EEK+EE+ EE + EE +EE E+EE+ E E+ E
Sbjct: 281 EKKEEKDEEKSEEVKTEEVDEEFEEEEKGFYYELYEKVNIE 321
Score = 32.1 bits (73), Expect = 0.054
Identities = 20/57 (35%), Positives = 36/57 (63%)
Query: 3 KREEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEELQAG 59
K +E+++E++E++ EE + EE +EE EEEE+ E E+ E ++ +E+ AG
Sbjct: 277 KELKEKKEEKDEEKSEEVKTEEVDEEFEEEEKGFYYELYEKVNIEANKKFIKEVIAG 333
Score = 31.4 bits (71), Expect = 0.079
Identities = 17/42 (40%), Positives = 25/42 (59%)
Query: 1 MGKREEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEE 42
K+EE++E++ EE + EE +EE EEEE E E+ E
Sbjct: 280 KEKKEEKDEEKSEEVKTEEVDEEFEEEEKGFYYELYEKVNIE 321
>gnl|CDD|203043 pfam04546, Sigma70_ner, Sigma-70, non-essential region. The
domain is found in the primary vegetative sigma factor.
The function of this domain is unclear and can be
removed without loss of function.
Length = 211
Score = 35.2 bits (82), Expect = 0.003
Identities = 15/49 (30%), Positives = 28/49 (57%)
Query: 5 EEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEE 53
+ E E +EE+ ED+++++EDE+E++EEE + + EE
Sbjct: 31 DPNAAAAAATAAAIESELDEEDLEDDDDDDEDEDEDDEEEADLGPDPEE 79
Score = 34.9 bits (81), Expect = 0.004
Identities = 13/46 (28%), Positives = 25/46 (54%)
Query: 11 EEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEEL 56
+ E E DEE+ E+D++++E+E+E++EEE +
Sbjct: 31 DPNAAAAAATAAAIESELDEEDLEDDDDDDEDEDEDDEEEADLGPD 76
Score = 34.5 bits (80), Expect = 0.006
Identities = 14/45 (31%), Positives = 27/45 (60%)
Query: 11 EEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEE 55
E E +EE+ E+++++DE+E+E++EEE + + EE
Sbjct: 35 AAAAATAAAIESELDEEDLEDDDDDDEDEDEDDEEEADLGPDPEE 79
Score = 33.7 bits (78), Expect = 0.011
Identities = 14/46 (30%), Positives = 26/46 (56%)
Query: 11 EEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEEL 56
E E +EED E++++D+E+E+E++EEE + + E
Sbjct: 34 AAAAAATAAAIESELDEEDLEDDDDDDEDEDEDDEEEADLGPDPEE 79
Score = 33.7 bits (78), Expect = 0.011
Identities = 11/49 (22%), Positives = 28/49 (57%)
Query: 6 EEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEE 54
+ E E +EE+ +++++++++E+E++EEE + + EE
Sbjct: 31 DPNAAAAAATAAAIESELDEEDLEDDDDDDEDEDEDDEEEADLGPDPEE 79
Score = 31.4 bits (72), Expect = 0.063
Identities = 9/45 (20%), Positives = 23/45 (51%)
Query: 19 EEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEELQAGGHGI 63
+ E E +EE+ E++++++E+E+E++ + G
Sbjct: 31 DPNAAAAAATAAAIESELDEEDLEDDDDDDEDEDEDDEEEADLGP 75
Score = 30.2 bits (69), Expect = 0.16
Identities = 11/41 (26%), Positives = 24/41 (58%)
Query: 18 EEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEELQA 58
+ E E DEE+ E++++++E+E+E++E +A
Sbjct: 31 DPNAAAAAATAAAIESELDEEDLEDDDDDDEDEDEDDEEEA 71
Score = 25.2 bits (56), Expect = 8.2
Identities = 11/35 (31%), Positives = 24/35 (68%)
Query: 2 GKREEEEEKEEEEKEEEEEEEEEEEEEDEEEEEED 36
+EE+ E+++ ++E+E+E++EEE D + E+
Sbjct: 45 ESELDEEDLEDDDDDDEDEDEDDEEEADLGPDPEE 79
>gnl|CDD|227496 COG5167, VID27, Protein involved in vacuole import and degradation
[Intracellular trafficking and secretion].
Length = 776
Score = 35.4 bits (81), Expect = 0.003
Identities = 14/57 (24%), Positives = 29/57 (50%)
Query: 1 MGKREEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEELQ 57
+ EK+ ++ E+ E E +E E EE+ E+ E+E + + +++EL+
Sbjct: 353 LDSSSVPLEKQFDDILYFEKMEIENRNPEESEHEEEVEDYEDENDHSKRICDDDELE 409
Score = 35.0 bits (80), Expect = 0.005
Identities = 14/53 (26%), Positives = 25/53 (47%)
Query: 3 KREEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEE 55
EE E+++ + E++ ++ E+ + E EE E EEE E+ E
Sbjct: 341 WGNEEAERKDYILDSSSVPLEKQFDDILYFEKMEIENRNPEESEHEEEVEDYE 393
Score = 34.6 bits (79), Expect = 0.007
Identities = 15/63 (23%), Positives = 25/63 (39%)
Query: 2 GKREEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEELQAGGH 61
G E E + + E++ ++ E+ E + EE E EEE E+ E+E
Sbjct: 342 GNEEAERKDYILDSSSVPLEKQFDDILYFEKMEIENRNPEESEHEEEVEDYEDENDHSKR 401
Query: 62 GIA 64
Sbjct: 402 ICD 404
Score = 34.6 bits (79), Expect = 0.007
Identities = 18/64 (28%), Positives = 27/64 (42%)
Query: 3 KREEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEELQAGGHG 62
K EE + ++ + E++ +D E+ E E EE E EEE E+ H
Sbjct: 340 KWGNEEAERKDYILDSSSVPLEKQFDDILYFEKMEIENRNPEESEHEEEVEDYEDENDHS 399
Query: 63 IAIC 66
IC
Sbjct: 400 KRIC 403
Score = 33.8 bits (77), Expect = 0.011
Identities = 15/51 (29%), Positives = 26/51 (50%)
Query: 5 EEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEE 55
E++ + E+ E E EE + EEE ED E+E + + +++E E
Sbjct: 360 LEKQFDDILYFEKMEIENRNPEESEHEEEVEDYEDENDHSKRICDDDELEN 410
Score = 33.8 bits (77), Expect = 0.011
Identities = 15/53 (28%), Positives = 24/53 (45%)
Query: 3 KREEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEE 55
++ EE E ++ + E++ D+ E E E EE E EEE E+
Sbjct: 339 EKWGNEEAERKDYILDSSSVPLEKQFDDILYFEKMEIENRNPEESEHEEEVED 391
Score = 33.8 bits (77), Expect = 0.012
Identities = 17/56 (30%), Positives = 26/56 (46%)
Query: 6 EEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEELQAGGH 61
E+ E E EE E EEE E+ EDE + + +++E E +E+ G
Sbjct: 371 EKMEIENRNPEESEHEEEVEDYEDENDHSKRICDDDELENHFRAADEKNSHLVVGF 426
Score = 33.8 bits (77), Expect = 0.014
Identities = 15/46 (32%), Positives = 23/46 (50%)
Query: 3 KREEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEE 48
K E E EE + EEE E+ E+E + + +D+E E +E
Sbjct: 372 KMEIENRNPEESEHEEEVEDYEDENDHSKRICDDDELENHFRAADE 417
Score = 33.0 bits (75), Expect = 0.022
Identities = 17/50 (34%), Positives = 24/50 (48%)
Query: 6 EEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEE 55
EK E E EE E EEE ED E+E + + +++E E +E
Sbjct: 368 LYFEKMEIENRNPEESEHEEEVEDYEDENDHSKRICDDDELENHFRAADE 417
Score = 32.7 bits (74), Expect = 0.028
Identities = 16/46 (34%), Positives = 24/46 (52%)
Query: 4 REEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEE 49
+ E E + EE E EEE E+ E+E D + D++E E +E
Sbjct: 372 KMEIENRNPEESEHEEEVEDYEDENDHSKRICDDDELENHFRAADE 417
Score = 32.3 bits (73), Expect = 0.039
Identities = 14/50 (28%), Positives = 27/50 (54%)
Query: 3 KREEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEE 52
+++ ++ E+ E E EE E E+E E+ EDE + + +++E E
Sbjct: 361 EKQFDDILYFEKMEIENRNPEESEHEEEVEDYEDENDHSKRICDDDELEN 410
Score = 31.1 bits (70), Expect = 0.11
Identities = 15/50 (30%), Positives = 25/50 (50%)
Query: 5 EEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEE 54
E+ E E + EE E EEE E+ E+E + + +++E E +E
Sbjct: 368 LYFEKMEIENRNPEESEHEEEVEDYEDENDHSKRICDDDELENHFRAADE 417
Score = 30.0 bits (67), Expect = 0.31
Identities = 14/51 (27%), Positives = 23/51 (45%)
Query: 5 EEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEE 55
E+ EE E+++ + E + ++ E+ E E EE E EEE
Sbjct: 338 NEKWGNEEAERKDYILDSSSVPLEKQFDDILYFEKMEIENRNPEESEHEEE 388
>gnl|CDD|218223 pfam04712, Radial_spoke, Radial spokehead-like protein. This
family includes the radial spoke head proteins RSP4 and
RSP6 from Chlamydomonas reinhardtii, and several
eukaryotic homologues, including mammalian RSHL1, the
protein product of a familial ciliary dyskinesia
candidate gene.
Length = 481
Score = 35.4 bits (82), Expect = 0.003
Identities = 20/33 (60%), Positives = 25/33 (75%)
Query: 17 EEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEE 49
E+++EEEE+EDEEEEEE+EE EE E EE
Sbjct: 343 NPEQKDEEEEQEDEEEEEEEEEPEEPEPEEGPP 375
Score = 35.0 bits (81), Expect = 0.004
Identities = 32/86 (37%), Positives = 42/86 (48%), Gaps = 30/86 (34%)
Query: 4 REEEEEKEEEEKEEEEEEEEEEEEED------------------------------EEEE 33
EEEEE+EEEE E +E EE + E E++
Sbjct: 288 EEEEEEEEEEEPAERDELEENPDFEGLEVRELADSLDNWVHHVQHILPQGRCTWVNPEQK 347
Query: 34 EEDEEEEEEEEEEEEEEEEEEELQAG 59
+E+EE+E+EEEEEEEEE EE E + G
Sbjct: 348 DEEEEQEDEEEEEEEEEPEEPEPEEG 373
Score = 35.0 bits (81), Expect = 0.005
Identities = 19/33 (57%), Positives = 24/33 (72%)
Query: 19 EEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEE 51
E+++EEEE E+EEEE+EEEE EE E EE
Sbjct: 343 NPEQKDEEEEQEDEEEEEEEEEPEEPEPEEGPP 375
Score = 35.0 bits (81), Expect = 0.005
Identities = 18/33 (54%), Positives = 25/33 (75%)
Query: 15 KEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEE 47
E+++EEEE+E+E+EEEEEE+ EE E EE
Sbjct: 343 NPEQKDEEEEQEDEEEEEEEEEPEEPEPEEGPP 375
Score = 35.0 bits (81), Expect = 0.005
Identities = 18/33 (54%), Positives = 25/33 (75%)
Query: 21 EEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEE 53
E+++EE+E+E+EE+EEEEEE EE E EE
Sbjct: 343 NPEQKDEEEEQEDEEEEEEEEEPEEPEPEEGPP 375
Score = 34.3 bits (79), Expect = 0.007
Identities = 19/34 (55%), Positives = 26/34 (76%)
Query: 23 EEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEEL 56
E++++EEE+E++EEEEEEEE EE E EE L
Sbjct: 343 NPEQKDEEEEQEDEEEEEEEEEPEEPEPEEGPPL 376
Score = 34.3 bits (79), Expect = 0.008
Identities = 19/35 (54%), Positives = 26/35 (74%)
Query: 22 EEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEEL 56
E+++E+EE+E+E+EEEEEEE EE E EE L
Sbjct: 343 NPEQKDEEEEQEDEEEEEEEEEPEEPEPEEGPPLL 377
Score = 30.8 bits (70), Expect = 0.12
Identities = 26/41 (63%), Positives = 30/41 (73%)
Query: 12 EEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEE 52
E E E EEEEEEEE + +EE+E EEEEEEE EE +EEE
Sbjct: 164 EVELREGEEEEEEEEVGEADEEDEGEEEEEEEPEEVPKEEE 204
Score = 30.4 bits (69), Expect = 0.15
Identities = 26/41 (63%), Positives = 30/41 (73%)
Query: 7 EEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEE 47
E E E E+EEEEEE E +EEDE EEEE+EE EE +EEE
Sbjct: 164 EVELREGEEEEEEEEVGEADEEDEGEEEEEEEPEEVPKEEE 204
Score = 30.4 bits (69), Expect = 0.16
Identities = 28/41 (68%), Positives = 30/41 (73%)
Query: 14 EKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEE 54
E E E EEEEEEEE E +EEDE EEEEEEE EE +EEE
Sbjct: 164 EVELREGEEEEEEEEVGEADEEDEGEEEEEEEPEEVPKEEE 204
Score = 29.6 bits (67), Expect = 0.28
Identities = 26/41 (63%), Positives = 31/41 (75%)
Query: 11 EEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEE 51
E E +E EEEEEEEE E +EE+E +EEEEEE EE +EEE
Sbjct: 164 EVELREGEEEEEEEEVGEADEEDEGEEEEEEEPEEVPKEEE 204
Score = 29.6 bits (67), Expect = 0.29
Identities = 20/42 (47%), Positives = 23/42 (54%)
Query: 20 EEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEELQAGGH 61
EEEEEEEE+EE E DE EE + E E E + L H
Sbjct: 287 LEEEEEEEEEEEPAERDELEENPDFEGLEVRELADSLDNWVH 328
Score = 29.6 bits (67), Expect = 0.36
Identities = 24/41 (58%), Positives = 30/41 (73%)
Query: 5 EEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEE 45
E E + EEE+EEEE E +EE+E EEEEEE+ EE +EEE
Sbjct: 164 EVELREGEEEEEEEEVGEADEEDEGEEEEEEEPEEVPKEEE 204
Score = 29.3 bits (66), Expect = 0.39
Identities = 24/41 (58%), Positives = 31/41 (75%)
Query: 6 EEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEE 46
E E +E EE+EEEEE E +EE++ EEEEE+E EE +EEE
Sbjct: 164 EVELREGEEEEEEEEVGEADEEDEGEEEEEEEPEEVPKEEE 204
Score = 28.9 bits (65), Expect = 0.62
Identities = 23/37 (62%), Positives = 28/37 (75%)
Query: 19 EEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEE 55
E EEEEEEE+ E +E++E EEEEEEE EE +EEE
Sbjct: 168 REGEEEEEEEEVGEADEEDEGEEEEEEEPEEVPKEEE 204
Score = 28.9 bits (65), Expect = 0.64
Identities = 32/83 (38%), Positives = 36/83 (43%), Gaps = 38/83 (45%)
Query: 13 EEKEEEEEEEEEEEEEDEEEEEED------------------------------------ 36
E+EEEEEEEEE E DE EE D
Sbjct: 287 LEEEEEEEEEEEPAERDELEENPDFEGLEVRELADSLDNWVHHVQHILPQGRCTWVNPEQ 346
Query: 37 --EEEEEEEEEEEEEEEEEEELQ 57
EEEE+E+EEEEEEEEE EE +
Sbjct: 347 KDEEEEQEDEEEEEEEEEPEEPE 369
Score = 28.5 bits (64), Expect = 0.78
Identities = 23/36 (63%), Positives = 27/36 (75%)
Query: 21 EEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEEL 56
E E E E+EEEEEE E +EE+E EEEEEEE EE+
Sbjct: 164 EVELREGEEEEEEEEVGEADEEDEGEEEEEEEPEEV 199
Score = 28.5 bits (64), Expect = 0.79
Identities = 25/41 (60%), Positives = 30/41 (73%)
Query: 9 EKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEE 49
E E E EEEEEEEE E ++E+E EE+EEEE EE +EEE
Sbjct: 164 EVELREGEEEEEEEEVGEADEEDEGEEEEEEEPEEVPKEEE 204
Score = 28.5 bits (64), Expect = 0.81
Identities = 24/44 (54%), Positives = 29/44 (65%)
Query: 19 EEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEELQAGGHG 62
E E E EEE+EEEE + +EE+E EEEEEEE EE + G G
Sbjct: 164 EVELREGEEEEEEEEVGEADEEDEGEEEEEEEPEEVPKEEEGTG 207
Score = 27.7 bits (62), Expect = 1.5
Identities = 24/40 (60%), Positives = 29/40 (72%)
Query: 16 EEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEE 55
E E E EEEEEE+E E ++E+E EEEEEEE EE +EE
Sbjct: 164 EVELREGEEEEEEEEVGEADEEDEGEEEEEEEPEEVPKEE 203
Score = 27.7 bits (62), Expect = 1.6
Identities = 24/37 (64%), Positives = 29/37 (78%)
Query: 4 REEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEE 40
RE EEE+EEEE E +EE+E EEEE+EE EE +EEE
Sbjct: 168 REGEEEEEEEEVGEADEEDEGEEEEEEEPEEVPKEEE 204
Score = 26.6 bits (59), Expect = 3.1
Identities = 22/37 (59%), Positives = 27/37 (72%)
Query: 3 KREEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEE 39
+ EEEE+EEE E +EE+E EEEEE+E EE EEE
Sbjct: 168 REGEEEEEEEEVGEADEEDEGEEEEEEEPEEVPKEEE 204
>gnl|CDD|220605 pfam10156, Med17, Subunit 17 of Mediator complex. This Mediator
complex subunit was formerly known as Srb4 in yeasts or
Trap80 in Drosophila and human. The Med17 subunit is
located within the head domain and is essential for
cell viability to the extent that a mutant strain of
cerevisiae lacking it shows all RNA polymerase
II-dependent transcription ceasing at non-permissive
temperatures.
Length = 454
Score = 35.4 bits (82), Expect = 0.003
Identities = 15/46 (32%), Positives = 28/46 (60%)
Query: 12 EEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEELQ 57
EE EE +E + + EE +EE+++EE++ ++ EE ++ EE
Sbjct: 51 EESLREEIAKEAAKIDFSEESDEEEDDEEDDNDDSEENKDTVEEFP 96
Score = 35.0 bits (81), Expect = 0.004
Identities = 17/44 (38%), Positives = 29/44 (65%)
Query: 6 EEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEE 49
EE +EE KE + + EE +E+E++EE+D ++ EE ++ EE
Sbjct: 51 EESLREEIAKEAAKIDFSEESDEEEDDEEDDNDDSEENKDTVEE 94
Score = 34.6 bits (80), Expect = 0.006
Identities = 16/44 (36%), Positives = 28/44 (63%)
Query: 8 EEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEE 51
EE EE +E + + EE DEEE++E+++ ++ EE ++ EE
Sbjct: 51 EESLREEIAKEAAKIDFSEESDEEEDDEEDDNDDSEENKDTVEE 94
Score = 33.5 bits (77), Expect = 0.013
Identities = 14/36 (38%), Positives = 24/36 (66%)
Query: 5 EEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEE 40
+E K + +E +EEE++EE++ D+ EE +D EE
Sbjct: 59 AKEAAKIDFSEESDEEEDDEEDDNDDSEENKDTVEE 94
Score = 33.1 bits (76), Expect = 0.017
Identities = 17/48 (35%), Positives = 31/48 (64%)
Query: 11 EEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEELQA 58
EE +EE +E + + +E +EEED+EE++ ++ EE ++ EE +A
Sbjct: 51 EESLREEIAKEAAKIDFSEESDEEEDDEEDDNDDSEENKDTVEEFPKA 98
Score = 33.1 bits (76), Expect = 0.018
Identities = 16/44 (36%), Positives = 28/44 (63%)
Query: 7 EEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEE 50
EE EE +E + + EE ++EE++EED+ ++ EE ++ EE
Sbjct: 51 EESLREEIAKEAAKIDFSEESDEEEDDEEDDNDDSEENKDTVEE 94
Score = 32.7 bits (75), Expect = 0.028
Identities = 13/40 (32%), Positives = 26/40 (65%)
Query: 5 EEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEE 44
EE KE + + EE +EEE++E+++ ++ +E ++ EE
Sbjct: 55 REEIAKEAAKIDFSEESDEEEDDEEDDNDDSEENKDTVEE 94
Score = 31.9 bits (73), Expect = 0.044
Identities = 13/50 (26%), Positives = 30/50 (60%)
Query: 9 EKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEELQA 58
E+ E+ +E + + EE +EEE+++E++ ++ EE ++ EE + +
Sbjct: 51 EESLREEIAKEAAKIDFSEESDEEEDDEEDDNDDSEENKDTVEEFPKARD 100
Score = 31.6 bits (72), Expect = 0.072
Identities = 14/40 (35%), Positives = 26/40 (65%)
Query: 4 REEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEE 43
REE ++ + EE +EEE++EED+ ++ E+ ++ EE
Sbjct: 55 REEIAKEAAKIDFSEESDEEEDDEEDDNDDSEENKDTVEE 94
Score = 28.5 bits (64), Expect = 0.80
Identities = 9/33 (27%), Positives = 23/33 (69%)
Query: 3 KREEEEEKEEEEKEEEEEEEEEEEEEDEEEEEE 35
+ + +E +E+E++EE++ ++ EE+++ EE
Sbjct: 62 AAKIDFSEESDEEEDDEEDDNDDSEENKDTVEE 94
Score = 25.8 bits (57), Expect = 6.1
Identities = 10/37 (27%), Positives = 23/37 (62%)
Query: 1 MGKREEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDE 37
+ K + + EE EEE++EE++ ++ +E ++ +E
Sbjct: 58 IAKEAAKIDFSEESDEEEDDEEDDNDDSEENKDTVEE 94
>gnl|CDD|218538 pfam05285, SDA1, SDA1. This family consists of several SDA1
protein homologues. SDA1 is a Saccharomyces cerevisiae
protein which is involved in the control of the actin
cytoskeleton. The protein is essential for cell
viability and is localised in the nucleus.
Length = 317
Score = 35.0 bits (81), Expect = 0.004
Identities = 21/53 (39%), Positives = 36/53 (67%)
Query: 3 KREEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEE 55
+ E+ E ++++ EEEE E EE+E+ D+E E D E ++E E + E+EEE++
Sbjct: 87 EAEQGLESDDDDDEEEEWEVEEDEDSDDEGEWIDVESDKEIESSDSEDEEEKD 139
Score = 33.9 bits (78), Expect = 0.011
Identities = 19/54 (35%), Positives = 36/54 (66%)
Query: 2 GKREEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEE 55
++++E E+ E ++++EEEE E EEDE+ ++E E + E ++E E + E+E
Sbjct: 82 ERKKKEAEQGLESDDDDDEEEEWEVEEDEDSDDEGEWIDVESDKEIESSDSEDE 135
Score = 33.1 bits (76), Expect = 0.018
Identities = 22/54 (40%), Positives = 36/54 (66%)
Query: 2 GKREEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEE 55
K+E E+ E ++ ++EEEE E EE+ED ++E E + E ++E E + E+EEE
Sbjct: 84 KKKEAEQGLESDDDDDEEEEWEVEEDEDSDDEGEWIDVESDKEIESSDSEDEEE 137
Score = 32.3 bits (74), Expect = 0.031
Identities = 19/53 (35%), Positives = 38/53 (71%)
Query: 4 REEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEEL 56
+ +EEE++++E E+ E +++++EE+E E EEDE+ ++E E + E ++E E
Sbjct: 77 KWKEEERKKKEAEQGLESDDDDDEEEEWEVEEDEDSDDEGEWIDVESDKEIES 129
Score = 32.3 bits (74), Expect = 0.033
Identities = 21/51 (41%), Positives = 35/51 (68%)
Query: 5 EEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEE 55
EEE +K+E E+ E +++++EEEE E EE+ED ++E E + E ++E E
Sbjct: 80 EEERKKKEAEQGLESDDDDDEEEEWEVEEDEDSDDEGEWIDVESDKEIESS 130
Score = 32.3 bits (74), Expect = 0.035
Identities = 20/49 (40%), Positives = 35/49 (71%)
Query: 7 EEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEE 55
E+ KEEE K++E E+ E +++D+EEEE + EE+E+ ++E E + E +
Sbjct: 76 EKWKEEERKKKEAEQGLESDDDDDEEEEWEVEEDEDSDDEGEWIDVESD 124
Score = 31.9 bits (73), Expect = 0.040
Identities = 25/52 (48%), Positives = 35/52 (67%)
Query: 5 EEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEEL 56
E E E+E+E++E ++ +E+ DEE EEDEEE EEEE E E+E+ EL
Sbjct: 126 EIESSDSEDEEEKDEAAKKAKEDSDEELSEEDEEEAAEEEEAEAEKEKASEL 177
Score = 31.9 bits (73), Expect = 0.048
Identities = 18/53 (33%), Positives = 36/53 (67%)
Query: 5 EEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEELQ 57
++++E+EE E EE+E+ ++E E D E ++E E + E+EEE++E ++ +
Sbjct: 96 DDDDEEEEWEVEEDEDSDDEGEWIDVESDKEIESSDSEDEEEKDEAAKKAKED 148
Score = 31.5 bits (72), Expect = 0.058
Identities = 23/57 (40%), Positives = 35/57 (61%)
Query: 2 GKREEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEELQA 58
G+ + E +E E + E+EEE++E + +E+ DEE EE+EEE EEEE E +
Sbjct: 116 GEWIDVESDKEIESSDSEDEEEKDEAAKKAKEDSDEELSEEDEEEAAEEEEAEAEKE 172
Score = 31.2 bits (71), Expect = 0.076
Identities = 19/53 (35%), Positives = 36/53 (67%)
Query: 5 EEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEELQ 57
EEEE + EE+++ ++E E + E D+E E D E+EEE++E ++ +E+ + +
Sbjct: 100 EEEEWEVEEDEDSDDEGEWIDVESDKEIESSDSEDEEEKDEAAKKAKEDSDEE 152
Score = 31.2 bits (71), Expect = 0.084
Identities = 19/50 (38%), Positives = 36/50 (72%)
Query: 6 EEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEE 55
E+ ++EE +K+E E+ E ++++DEEEE E EE+E+ ++E E + E ++
Sbjct: 76 EKWKEEERKKKEAEQGLESDDDDDEEEEWEVEEDEDSDDEGEWIDVESDK 125
Score = 30.8 bits (70), Expect = 0.10
Identities = 17/51 (33%), Positives = 37/51 (72%)
Query: 5 EEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEE 55
E+ +E+E ++KE E+ E ++++++EEE E +E+E+ ++E E + E ++E
Sbjct: 76 EKWKEEERKKKEAEQGLESDDDDDEEEEWEVEEDEDSDDEGEWIDVESDKE 126
Score = 30.4 bits (69), Expect = 0.19
Identities = 18/53 (33%), Positives = 37/53 (69%)
Query: 3 KREEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEE 55
K +EEE K++E ++ E +++++EEE+ E EE+++ ++E E + E ++E E
Sbjct: 77 KWKEEERKKKEAEQGLESDDDDDEEEEWEVEEDEDSDDEGEWIDVESDKEIES 129
Score = 28.9 bits (65), Expect = 0.51
Identities = 18/52 (34%), Positives = 34/52 (65%)
Query: 4 REEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEE 55
E + E +++ E + E+EEE+++ ++ +++ +EE EE+EEE EEEE
Sbjct: 115 EGEWIDVESDKEIESSDSEDEEEKDEAAKKAKEDSDEELSEEDEEEAAEEEE 166
Score = 26.2 bits (58), Expect = 5.3
Identities = 19/50 (38%), Positives = 32/50 (64%)
Query: 6 EEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEE 55
EEE + E E+ +EEE + +E E+ E +++++EEEE E EE+E+
Sbjct: 62 EEEVVDGIPGLELLEKWKEEERKKKEAEQGLESDDDDDEEEEWEVEEDED 111
>gnl|CDD|217902 pfam04111, APG6, Autophagy protein Apg6. In yeast, 15 Apg proteins
coordinate the formation of autophagosomes. Autophagy is
a bulk degradation process induced by starvation in
eukaryotic cells. Apg6/Vps30p has two distinct functions
in the autophagic process, either associated with the
membrane or in a retrieval step of the carboxypeptidase
Y sorting pathway.
Length = 356
Score = 35.2 bits (81), Expect = 0.004
Identities = 20/48 (41%), Positives = 31/48 (64%)
Query: 9 EKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEEL 56
E +E +KEEE +E EE E E+++ + E E +EE+E+ E EE + L
Sbjct: 71 ELDELKKEEERLLDELEELEKEDDDLDGELVELQEEKEQLENEELQYL 118
Score = 32.2 bits (73), Expect = 0.037
Identities = 23/59 (38%), Positives = 32/59 (54%), Gaps = 4/59 (6%)
Query: 3 KREEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEE----EEEEEEEEEEEEEEEEELQ 57
+ E E + E +E ++EEE DE EE E E+ E E +EE+E+ E EELQ
Sbjct: 58 QNVEISNYEALDSELDELKKEEERLLDELEELEKEDDDLDGELVELQEEKEQLENEELQ 116
Score = 31.4 bits (71), Expect = 0.073
Identities = 20/53 (37%), Positives = 30/53 (56%), Gaps = 1/53 (1%)
Query: 6 EEEEKEEEEKEEE-EEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEELQ 57
+E +KEEE +E EE E+E+++ D E E EE+E+ E EE + E
Sbjct: 73 DELKKEEERLLDELEELEKEDDDLDGELVELQEEKEQLENEELQYLREYNLFD 125
Score = 27.9 bits (62), Expect = 1.3
Identities = 18/55 (32%), Positives = 31/55 (56%)
Query: 3 KREEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEELQ 57
K+EEE +E E+ E+E+++ + E + +EE+E E EE + E + LQ
Sbjct: 76 KKEEERLLDELEELEKEDDDLDGELVELQEEKEQLENEELQYLREYNLFDRNNLQ 130
Score = 25.6 bits (56), Expect = 7.5
Identities = 19/60 (31%), Positives = 31/60 (51%), Gaps = 6/60 (10%)
Query: 5 EEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEE------EEEEEEEEELQA 58
+ E + E E + E +E + EEE DE EE E+E++ E +EE+E+L+
Sbjct: 53 SKLESQNVEISNYEALDSELDELKKEEERLLDELEELEKEDDDLDGELVELQEEKEQLEN 112
>gnl|CDD|221250 pfam11831, Myb_Cef, pre-mRNA splicing factor component. This
family is a region of the Myb-Related Cdc5p/Cef1
proteins, in fungi, and is part of the pre-mRNA splicing
factor complex.
Length = 363
Score = 35.0 bits (81), Expect = 0.004
Identities = 21/40 (52%), Positives = 26/40 (65%)
Query: 17 EEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEEL 56
E EEEEEE EE EEE EED + + + EE +E+EEL
Sbjct: 148 ELPEEEEEEPEEMEEELEEDAADRDARKRAAEEAKEQEEL 187
Score = 31.6 bits (72), Expect = 0.061
Identities = 22/54 (40%), Positives = 30/54 (55%)
Query: 5 EEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEELQA 58
+ + E E E EEEEEE EE EEE EE+ + + + EE +E+EE Q
Sbjct: 140 KPKNEFELELPEEEEEEPEEMEEELEEDAADRDARKRAAEEAKEQEELRRRSQV 193
Score = 28.9 bits (65), Expect = 0.60
Identities = 22/47 (46%), Positives = 29/47 (61%), Gaps = 1/47 (2%)
Query: 3 KREEEEEKEEEEKEEEEEEEEEEE-EEDEEEEEEDEEEEEEEEEEEE 48
K + E E E E+EEEE EE EEE EED + + + EE +E+EE
Sbjct: 140 KPKNEFELELPEEEEEEPEEMEEELEEDAADRDARKRAAEEAKEQEE 186
>gnl|CDD|148051 pfam06213, CobT, Cobalamin biosynthesis protein CobT. This family
consists of several bacterial cobalamin biosynthesis
(CobT) proteins. CobT is involved in the transformation
of precorrin-3 into cobyrinic acid.
Length = 282
Score = 34.8 bits (80), Expect = 0.005
Identities = 16/55 (29%), Positives = 32/55 (58%)
Query: 5 EEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEELQAG 59
E E E+ ++E++ +E+E++++ EEEE + E+ + EE E E++A
Sbjct: 215 EPESADSEDNEDEDDPKEDEDDDQGEEEESGSSDSLSEDSDASSEEMESGEMEAA 269
Score = 34.0 bits (78), Expect = 0.008
Identities = 15/55 (27%), Positives = 30/55 (54%)
Query: 1 MGKREEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEE 55
+G E + E+ E E++ +E+E++++ +EEE + E+ + EE E E
Sbjct: 212 LGDEPESADSEDNEDEDDPKEDEDDDQGEEEESGSSDSLSEDSDASSEEMESGEM 266
Score = 32.9 bits (75), Expect = 0.023
Identities = 16/50 (32%), Positives = 28/50 (56%)
Query: 5 EEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEE 54
E+ E E++ KE+E++++ EEEE + ++ + EE E E E E
Sbjct: 221 SEDNEDEDDPKEDEDDDQGEEEESGSSDSLSEDSDASSEEMESGEMEAAE 270
Score = 31.7 bits (72), Expect = 0.063
Identities = 14/53 (26%), Positives = 30/53 (56%)
Query: 3 KREEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEE 55
+ +E ++ E + E+ E+E+D +E+E+D++ EEEE + E+ +
Sbjct: 203 LSSMDMAEELGDEPESADSEDNEDEDDPKEDEDDDQGEEEESGSSDSLSEDSD 255
Score = 31.3 bits (71), Expect = 0.073
Identities = 15/59 (25%), Positives = 35/59 (59%)
Query: 1 MGKREEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEELQAG 59
M EE ++ E E+ E+E++ +E++++++ E+EE + E+ + EE+++G
Sbjct: 206 MDMAEELGDEPESADSEDNEDEDDPKEDEDDDQGEEEESGSSDSLSEDSDASSEEMESG 264
Score = 28.6 bits (64), Expect = 0.61
Identities = 12/51 (23%), Positives = 26/51 (50%)
Query: 5 EEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEE 55
+ +E++++++ EEEE + ED + E+ E E E E ++ +
Sbjct: 229 DPKEDEDDDQGEEEESGSSDSLSEDSDASSEEMESGEMEAAEASADDTPDS 279
Score = 28.6 bits (64), Expect = 0.62
Identities = 15/53 (28%), Positives = 27/53 (50%)
Query: 3 KREEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEE 55
+E++ KE+E+ ++ EEEE + E+ + EE E E E E ++
Sbjct: 224 NEDEDDPKEDEDDDQGEEEESGSSDSLSEDSDASSEEMESGEMEAAEASADDT 276
Score = 25.5 bits (56), Expect = 8.1
Identities = 11/51 (21%), Positives = 29/51 (56%)
Query: 4 REEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEE 54
R+ + E+ +E E + E+ ++E++ +++E++++ EEEE +
Sbjct: 200 RDMLSSMDMAEELGDEPESADSEDNEDEDDPKEDEDDDQGEEEESGSSDSL 250
>gnl|CDD|224188 COG1269, NtpI, Archaeal/vacuolar-type H+-ATPase subunit I [Energy
production and conversion].
Length = 660
Score = 34.6 bits (80), Expect = 0.007
Identities = 20/55 (36%), Positives = 27/55 (49%)
Query: 3 KREEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEELQ 57
K E E + EE + E+ E EE + EE E +EE E+ E+ EE E L
Sbjct: 89 KLEAELKSLEEVIKPAEKFSSEVEELTRKLEERLSELDEELEDLEDLLEELEPLA 143
Score = 32.7 bits (75), Expect = 0.025
Identities = 18/52 (34%), Positives = 24/52 (46%)
Query: 2 GKREEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEE 53
E + EE K E+ E EE + EE E +EE E+ E+ EE E
Sbjct: 89 KLEAELKSLEEVIKPAEKFSSEVEELTRKLEERLSELDEELEDLEDLLEELE 140
Score = 31.6 bits (72), Expect = 0.071
Identities = 20/53 (37%), Positives = 26/53 (49%)
Query: 6 EEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEELQA 58
E E K EE + E+ E EE + EE E +EE E+ E+ EE E A
Sbjct: 91 EAELKSLEEVIKPAEKFSSEVEELTRKLEERLSELDEELEDLEDLLEELEPLA 143
Score = 30.8 bits (70), Expect = 0.15
Identities = 17/55 (30%), Positives = 22/55 (40%)
Query: 4 REEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEELQA 58
E E E + + E E E+ E +DE E E E E+ EEL A
Sbjct: 211 NELGFELYEVPEFDGGPSELISELEEVIAEIQDELESLRSELEALAEKIAEELLA 265
Score = 28.5 bits (64), Expect = 0.77
Identities = 19/62 (30%), Positives = 26/62 (41%), Gaps = 4/62 (6%)
Query: 4 REEEEEKEEEEKEEEEEEEE----EEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEELQAG 59
+ EE + EK E EE EE + +EE ED E+ EE E + + L G
Sbjct: 95 KSLEEVIKPAEKFSSEVEELTRKLEERLSELDEELEDLEDLLEELEPLAYLDFDLSLLRG 154
Query: 60 GH 61
Sbjct: 155 LK 156
Score = 28.1 bits (63), Expect = 1.1
Identities = 10/42 (23%), Positives = 16/42 (38%)
Query: 1 MGKREEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEE 42
+ + E + E E E E E+ E+ E E E+
Sbjct: 234 LEEVIAEIQDELESLRSELEALAEKIAEELLAVREILEIEKA 275
Score = 27.7 bits (62), Expect = 1.6
Identities = 15/50 (30%), Positives = 20/50 (40%)
Query: 8 EEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEELQ 57
E E +E E ++E E E E E+ EE E E E+ L
Sbjct: 228 SELISELEEVIAEIQDELESLRSELEALAEKIAEELLAVREILEIEKALG 277
Score = 27.7 bits (62), Expect = 1.6
Identities = 14/57 (24%), Positives = 24/57 (42%)
Query: 1 MGKREEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEELQ 57
+ + E + EE E+ E E + +E + ++ E EE + EE EL
Sbjct: 70 LRSVKGLEGRLFILPEEVEKLEAELKSLEEVIKPAEKFSSEVEELTRKLEERLSELD 126
Score = 27.3 bits (61), Expect = 1.8
Identities = 15/56 (26%), Positives = 22/56 (39%)
Query: 2 GKREEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEELQ 57
G E + EE E ++E E E E E+ EE E E E+ ++
Sbjct: 225 GGPSELISELEEVIAEIQDELESLRSELEALAEKIAEELLAVREILEIEKALGDVL 280
Score = 25.8 bits (57), Expect = 6.8
Identities = 17/63 (26%), Positives = 25/63 (39%)
Query: 3 KREEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEELQAGGHG 62
E EE E ++E E E E E+ EE E E E+ + +L +
Sbjct: 230 LISELEEVIAEIQDELESLRSELEALAEKIAEELLAVREILEIEKALGDVLSKLARTEYT 289
Query: 63 IAI 65
+AI
Sbjct: 290 LAI 292
>gnl|CDD|237192 PRK12758, PRK12758, DNA topoisomerase IV subunit A; Provisional.
Length = 869
Score = 34.2 bits (79), Expect = 0.008
Identities = 17/56 (30%), Positives = 28/56 (50%)
Query: 1 MGKREEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEEL 56
G R + + + E EE EEE EE EE D E+ + E++ ++E+ + L
Sbjct: 813 KGNRLTTYKVKTINELEPLPYEEPEEETAEEPEEVDPEDVKSEDDIDDEDTGQLGL 868
Score = 31.5 bits (72), Expect = 0.072
Identities = 16/48 (33%), Positives = 26/48 (54%)
Query: 12 EEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEELQAG 59
+ K E E EE +EE EE EE + E+ + E++ ++E+ Q G
Sbjct: 820 YKVKTINELEPLPYEEPEEETAEEPEEVDPEDVKSEDDIDDEDTGQLG 867
Score = 28.0 bits (63), Expect = 1.0
Identities = 14/39 (35%), Positives = 21/39 (53%)
Query: 22 EEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEELQAGG 60
E E EE EEE EE EE + E+ + E++ + + G
Sbjct: 826 NELEPLPYEEPEEETAEEPEEVDPEDVKSEDDIDDEDTG 864
>gnl|CDD|183610 PRK12585, PRK12585, putative monovalent cation/H+ antiporter
subunit G; Reviewed.
Length = 197
Score = 33.9 bits (77), Expect = 0.009
Identities = 23/52 (44%), Positives = 36/52 (69%)
Query: 4 REEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEE 55
R+E+ EK +E+EE EE E E E++ +E ED+EE+E E EE+ EE+ ++
Sbjct: 124 RQEQIEKARQEREELEERMEWERREEKIDEREDQEEQEREREEQTIEEQSDD 175
Score = 32.0 bits (72), Expect = 0.041
Identities = 23/52 (44%), Positives = 35/52 (67%)
Query: 3 KREEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEE 54
+REE EE+ E E+ EE+ +E E++EE E E EE EE+ ++ E E E++E
Sbjct: 134 EREELEERMEWERREEKIDEREDQEEQEREREEQTIEEQSDDSEHEIIEQDE 185
Score = 30.8 bits (69), Expect = 0.12
Identities = 19/50 (38%), Positives = 35/50 (70%)
Query: 6 EEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEE 55
E E++ +E+E++EE+E E EE+ EE+ +D E E E++E E E ++++
Sbjct: 145 ERREEKIDEREDQEEQEREREEQTIEEQSDDSEHEIIEQDESETESDDDK 194
Score = 29.6 bits (66), Expect = 0.28
Identities = 19/53 (35%), Positives = 36/53 (67%)
Query: 3 KREEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEE 55
+R EE+ E E++EE+E E EE+ E++ ++ E E E++E E E ++++ E+
Sbjct: 145 ERREEKIDEREDQEEQEREREEQTIEEQSDDSEHEIIEQDESETESDDDKTEK 197
Score = 29.6 bits (66), Expect = 0.29
Identities = 22/49 (44%), Positives = 32/49 (65%)
Query: 10 KEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEELQA 58
+E+ EK +E EE EE E E EE+ +E E++EE+E E EE+ E Q+
Sbjct: 125 QEQIEKARQEREELEERMEWERREEKIDEREDQEEQEREREEQTIEEQS 173
Score = 25.0 bits (54), Expect = 9.5
Identities = 18/53 (33%), Positives = 34/53 (64%)
Query: 3 KREEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEE 55
K+++ ++K+ +E+ E+ +E E+ EE E E EE+ +E E++EE+E E
Sbjct: 111 KKDDIKKKKSLIIRQEQIEKARQEREELEERMEWERREEKIDEREDQEEQERE 163
>gnl|CDD|234504 TIGR04216, halo_surf_glyco, major cell surface glycoprotein.
Members of this family are the S-layer-forming
halobacterial major cell surface glycoprotein. The
highest scores below model cutoffs are fragmentary
paralogs to actual members of the family. Modifications
include at N-linked and O-linked glycosylation, a
C-terminal diphytanylglyceryl modification, and probable
cleavage of the PGF-CTERM tail.
Length = 782
Score = 34.1 bits (78), Expect = 0.010
Identities = 16/58 (27%), Positives = 19/58 (32%)
Query: 8 EEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEELQAGGHGIAI 65
EE E + E+ EE E E EE EE G GIA+
Sbjct: 709 EETERPDTTTSEDPTTTTTPTTTGPEETTETAEPTTTTEEPTEETTTGSSTPGFGIAV 766
Score = 31.4 bits (71), Expect = 0.091
Identities = 14/60 (23%), Positives = 19/60 (31%)
Query: 6 EEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEELQAGGHGIAI 65
EE E+ + E+ EE E E EE EE G +A+
Sbjct: 709 EETERPDTTTSEDPTTTTTPTTTGPEETTETAEPTTTTEEPTEETTTGSSTPGFGIAVAL 768
>gnl|CDD|218003 pfam04281, Tom22, Mitochondrial import receptor subunit Tom22.
The mitochondrial protein translocase family, which is
responsible for movement of nuclear encoded
pre-proteins into mitochondria, is very complex with at
least 19 components. These proteins include several
chaperone proteins, four proteins of the outer membrane
translocase (Tom) import receptor, five proteins of the
Tom channel complex, five proteins of the inner
membrane translocase (Tim) and three "motor" proteins.
This family represents the Tom22 proteins. The N
terminal region of Tom22 has been shown to have
chaperone-like activity, and the C terminal region
faces the intermembrane face.
Length = 136
Score = 33.4 bits (77), Expect = 0.010
Identities = 13/50 (26%), Positives = 28/50 (56%)
Query: 1 MGKREEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEE 50
M K E E++ +EK + +EE +D++E++ D + + ++ + E E
Sbjct: 1 MVKLTEVEDETFQEKPAAPKNLAQEESDDDDEDDTDTDSDISDDSDFENE 50
Score = 32.2 bits (74), Expect = 0.020
Identities = 9/46 (19%), Positives = 26/46 (56%)
Query: 7 EEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEE 52
E ++E +E+ + +EE ++++E+D + + + ++ + E E
Sbjct: 5 TEVEDETFQEKPAAPKNLAQEESDDDDEDDTDTDSDISDDSDFENE 50
Score = 31.1 bits (71), Expect = 0.058
Identities = 9/46 (19%), Positives = 26/46 (56%)
Query: 8 EEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEE 53
E E+E +E+ + +E+ ++++ED+ + + + ++ + E E
Sbjct: 5 TEVEDETFQEKPAAPKNLAQEESDDDDEDDTDTDSDISDDSDFENE 50
Score = 29.1 bits (66), Expect = 0.26
Identities = 9/45 (20%), Positives = 25/45 (55%)
Query: 11 EEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEE 55
E E++ +E+ + EE +++DE++ + + + ++ + E E
Sbjct: 6 EVEDETFQEKPAAPKNLAQEESDDDDEDDTDTDSDISDDSDFENE 50
Score = 29.1 bits (66), Expect = 0.32
Identities = 9/46 (19%), Positives = 25/46 (54%)
Query: 6 EEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEE 51
E E E +++ + +EE D+++E++ + + + ++ + E E
Sbjct: 5 TEVEDETFQEKPAAPKNLAQEESDDDDEDDTDTDSDISDDSDFENE 50
Score = 28.8 bits (65), Expect = 0.42
Identities = 8/44 (18%), Positives = 25/44 (56%)
Query: 12 EEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEE 55
E ++E +E+ + +EE +D++E++ + + + ++ + E
Sbjct: 5 TEVEDETFQEKPAAPKNLAQEESDDDDEDDTDTDSDISDDSDFE 48
Score = 27.6 bits (62), Expect = 1.2
Identities = 9/45 (20%), Positives = 24/45 (53%)
Query: 11 EEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEE 55
E E E +E+ + +EE ++D+E++ + + + ++ + E
Sbjct: 5 TEVEDETFQEKPAAPKNLAQEESDDDDEDDTDTDSDISDDSDFEN 49
Score = 26.8 bits (60), Expect = 1.8
Identities = 6/41 (14%), Positives = 23/41 (56%)
Query: 17 EEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEELQ 57
E+E +E+ +EE ++++E++ + + + ++ + +
Sbjct: 8 EDETFQEKPAAPKNLAQEESDDDDEDDTDTDSDISDDSDFE 48
>gnl|CDD|220972 pfam11081, DUF2890, Protein of unknown function (DUF2890). This
family is conserved in dsDNA adenoviruses of
vertebrates. The function is not known.
Length = 172
Score = 33.4 bits (76), Expect = 0.011
Identities = 21/42 (50%), Positives = 30/42 (71%)
Query: 5 EEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEE 46
++EEE + + EE EE+EEE E+ ++ +EEDEE EE EEE
Sbjct: 18 KDEEEDWDSQAEEVEEDEEEMEDWEDSLDEEDEEAEEVEEET 59
Score = 33.4 bits (76), Expect = 0.011
Identities = 20/42 (47%), Positives = 31/42 (73%)
Query: 11 EEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEE 52
++EE++ + + EE EE+E+E E+ ED +EE+EE EE EEE
Sbjct: 18 KDEEEDWDSQAEEVEEDEEEMEDWEDSLDEEDEEAEEVEEET 59
Score = 33.0 bits (75), Expect = 0.015
Identities = 21/42 (50%), Positives = 30/42 (71%)
Query: 14 EKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEE 55
+ EEE+ + + EE E++EEE ED E+ +EE+EE EE EEE
Sbjct: 18 KDEEEDWDSQAEEVEEDEEEMEDWEDSLDEEDEEAEEVEEET 59
Score = 33.0 bits (75), Expect = 0.017
Identities = 21/42 (50%), Positives = 31/42 (73%)
Query: 13 EEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEE 54
+++EE+ + + EE EEDEEE E+ E+ +EE+EE EE EEE
Sbjct: 18 KDEEEDWDSQAEEVEEDEEEMEDWEDSLDEEDEEAEEVEEET 59
Score = 32.6 bits (74), Expect = 0.020
Identities = 21/42 (50%), Positives = 30/42 (71%)
Query: 9 EKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEE 50
+ EEE+ + + EE EE+EEE E+ E+ +EE+EE EE EEE
Sbjct: 18 KDEEEDWDSQAEEVEEDEEEMEDWEDSLDEEDEEAEEVEEET 59
Score = 31.8 bits (72), Expect = 0.040
Identities = 21/42 (50%), Positives = 30/42 (71%)
Query: 10 KEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEE 51
K+EEE + + EE EE+EE+ E+ E+ +EE+EE EE EEE
Sbjct: 18 KDEEEDWDSQAEEVEEDEEEMEDWEDSLDEEDEEAEEVEEET 59
Score = 31.8 bits (72), Expect = 0.048
Identities = 20/42 (47%), Positives = 31/42 (73%)
Query: 7 EEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEE 48
++E+E+ + + EE EE+EEE ED E+ ++E+EE EE EEE
Sbjct: 18 KDEEEDWDSQAEEVEEDEEEMEDWEDSLDEEDEEAEEVEEET 59
Score = 31.4 bits (71), Expect = 0.068
Identities = 20/42 (47%), Positives = 30/42 (71%)
Query: 8 EEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEE 49
+++EE+ + EE EE+EEE ++ E+ DEE+EE EE EEE
Sbjct: 18 KDEEEDWDSQAEEVEEDEEEMEDWEDSLDEEDEEAEEVEEET 59
Score = 31.0 bits (70), Expect = 0.076
Identities = 19/42 (45%), Positives = 31/42 (73%)
Query: 6 EEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEE 47
++EE++ + + EE EE+EEE E+ E+ +E++EE EE EEE
Sbjct: 18 KDEEEDWDSQAEEVEEDEEEMEDWEDSLDEEDEEAEEVEEET 59
Score = 29.9 bits (67), Expect = 0.19
Identities = 19/53 (35%), Positives = 33/53 (62%)
Query: 3 KREEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEE 55
K ++ K ++EEE+ + + E+ EE+EE+ E+ E+ +EE+EE EE E
Sbjct: 4 KGNAKKLKVRPPPTKDEEEDWDSQAEEVEEDEEEMEDWEDSLDEEDEEAEEVE 56
Score = 29.5 bits (66), Expect = 0.24
Identities = 17/55 (30%), Positives = 33/55 (60%)
Query: 1 MGKREEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEE 55
M + ++ + ++EEE+ + + +E EE+E+E E+ E+ +EE+EE EE
Sbjct: 1 MPPKGNAKKLKVRPPPTKDEEEDWDSQAEEVEEDEEEMEDWEDSLDEEDEEAEEV 55
Score = 27.6 bits (61), Expect = 1.4
Identities = 16/55 (29%), Positives = 28/55 (50%)
Query: 7 EEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEELQAGGH 61
+ + EE E++EEE E+ E+ ++E+EE E+ EEE + + Q
Sbjct: 25 DSQAEEVEEDEEEMEDWEDSLDEEDEEAEEVEEETAASSKAPSSSSKSSSQETIS 79
>gnl|CDD|221179 pfam11711, Tim54, Inner membrane protein import complex subunit
Tim54. Mitochondrial function depends on the import of
hundreds of different proteins synthesised in the
cytosol. Protein import is a multi-step pathway which
includes the binding of precursor proteins to surface
receptors, translocation of the precursor across one or
both mitochondrial membranes, and folding and assembly
of the imported protein inside the mitochondrion. Most
precursor proteins carry amino-terminal targeting
signals, called pre-sequences, and are imported into
mitochondria via import complexes located in both the
outer and the inner membrane (IM). The IM complex, TIM,
is made up of at least two proteins which mediate
translocation of proteins into the matrix by removing
their signal peptide and another pair of proteins, Tim54
and Tim22, that insert the polytopic proteins, that
carry internal targetting information, into the inner
membrane.
Length = 377
Score = 33.9 bits (78), Expect = 0.011
Identities = 17/51 (33%), Positives = 20/51 (39%)
Query: 5 EEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEE 55
E E +E E E E E E EE E EE E+ EEE +
Sbjct: 199 EPPEPTVDEAAPETEVEATPAAESPAEPAEETAETTPEETEDAPEEENNKP 249
Score = 32.0 bits (73), Expect = 0.043
Identities = 15/55 (27%), Positives = 20/55 (36%)
Query: 3 KREEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEELQ 57
E ++ E E E E E EE E EE E+ EEE + +
Sbjct: 200 PPEPTVDEAAPETEVEATPAAESPAEPAEETAETTPEETEDAPEEENNKPVKPPV 254
Score = 31.6 bits (72), Expect = 0.054
Identities = 17/50 (34%), Positives = 20/50 (40%)
Query: 6 EEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEE 55
+ E E +E E E E E E EE E EE E+ EEE
Sbjct: 196 DPPEPPEPTVDEAAPETEVEATPAAESPAEPAEETAETTPEETEDAPEEE 245
Score = 31.6 bits (72), Expect = 0.055
Identities = 18/55 (32%), Positives = 21/55 (38%)
Query: 1 MGKREEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEE 55
+G + E E E E E E E E EE E EE E+ EEE
Sbjct: 192 LGPLDPPEPPEPTVDEAAPETEVEATPAAESPAEPAEETAETTPEETEDAPEEEN 246
Score = 31.6 bits (72), Expect = 0.062
Identities = 13/52 (25%), Positives = 19/52 (36%)
Query: 7 EEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEELQA 58
E + ++ E E E + E +E E EE E+ EEE
Sbjct: 199 EPPEPTVDEAAPETEVEATPAAESPAEPAEETAETTPEETEDAPEEENNKPV 250
>gnl|CDD|240327 PTZ00243, PTZ00243, ABC transporter; Provisional.
Length = 1560
Score = 34.0 bits (78), Expect = 0.012
Identities = 10/45 (22%), Positives = 19/45 (42%)
Query: 8 EEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEE 52
E KE ++ +E + + E E + D E ++E E +
Sbjct: 880 ELKENKDSKEGDADAEVAEVDAAPGGAVDHEPPVAKQEGNAEGGD 924
Score = 32.1 bits (73), Expect = 0.048
Identities = 9/45 (20%), Positives = 19/45 (42%)
Query: 5 EEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEE 49
E +E K+ +E + + E E + + E ++E E +
Sbjct: 880 ELKENKDSKEGDADAEVAEVDAAPGGAVDHEPPVAKQEGNAEGGD 924
Score = 31.7 bits (72), Expect = 0.060
Identities = 8/50 (16%), Positives = 20/50 (40%)
Query: 11 EEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEELQAGG 60
E +E ++ +E + + E + + + E ++E E + A
Sbjct: 880 ELKENKDSKEGDADAEVAEVDAAPGGAVDHEPPVAKQEGNAEGGDGAALD 929
Score = 30.9 bits (70), Expect = 0.14
Identities = 11/58 (18%), Positives = 25/58 (43%)
Query: 18 EEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEELQAGGHGIAICQCKSAKIVT 75
E +E ++ +E D + E + + + E ++E A G A + +++T
Sbjct: 880 ELKENKDSKEGDADAEVAEVDAAPGGAVDHEPPVAKQEGNAEGGDGAALDAAAGRLMT 937
Score = 30.5 bits (69), Expect = 0.16
Identities = 8/56 (14%), Positives = 22/56 (39%)
Query: 4 REEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEELQAG 59
E +E ++ ++ + + E E + + + ++E E + + AG
Sbjct: 878 AAELKENKDSKEGDADAEVAEVDAAPGGAVDHEPPVAKQEGNAEGGDGAALDAAAG 933
Score = 27.8 bits (62), Expect = 1.6
Identities = 8/45 (17%), Positives = 17/45 (37%)
Query: 2 GKREEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEE 46
+E ++ KE + E E + + E ++E E +
Sbjct: 880 ELKENKDSKEGDADAEVAEVDAAPGGAVDHEPPVAKQEGNAEGGD 924
>gnl|CDD|221185 pfam11719, Drc1-Sld2, DNA replication and checkpoint protein.
Genome duplication is precisely regulated by
cyclin-dependent kinases CDKs, which bring about the
onset of S phase by activating replication origins and
then prevent relicensing of origins until mitosis is
completed. The optimum sequence motif for CDK
phosphorylation is S/T-P-K/R-K/R, and Drc1-Sld2 is found
to have at least 11 potential phosphorylation sites.
Drc1 is required for DNA synthesis and S-M replication
checkpoint control. Drc1 associates with Cdc2 and is
phosphorylated at the onset of S phase when Cdc2 is
activated. Thus Cdc2 promotes DNA replication by
phosphorylating Drc1 and regulating its association with
Cut5. Sld2 and Sld3 represent the minimal set of S-CDK
substrates required for DNA replication.
Length = 397
Score = 33.6 bits (77), Expect = 0.013
Identities = 13/39 (33%), Positives = 17/39 (43%)
Query: 6 EEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEE 44
EEE ++E E E EE EEE D + +E
Sbjct: 242 EEESIDDELDVLREIEAEEAGIGPIEEEVVDSQAANDEP 280
Score = 31.3 bits (71), Expect = 0.089
Identities = 12/41 (29%), Positives = 19/41 (46%)
Query: 17 EEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEELQ 57
EEE ++E + E E EE EEE + + +E +
Sbjct: 242 EEESIDDELDVLREIEAEEAGIGPIEEEVVDSQAANDEPRR 282
Score = 30.1 bits (68), Expect = 0.19
Identities = 12/40 (30%), Positives = 18/40 (45%)
Query: 4 REEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEE 43
+EEE +E + E E EE EEE + + +E
Sbjct: 241 QEEESIDDELDVLREIEAEEAGIGPIEEEVVDSQAANDEP 280
Score = 30.1 bits (68), Expect = 0.24
Identities = 11/39 (28%), Positives = 18/39 (46%)
Query: 13 EEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEE 51
EE+ ++E + E E EE EEE + + +E
Sbjct: 242 EEESIDDELDVLREIEAEEAGIGPIEEEVVDSQAANDEP 280
Score = 29.4 bits (66), Expect = 0.37
Identities = 11/40 (27%), Positives = 19/40 (47%)
Query: 15 KEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEE 54
+EEE ++E + + E EE EEE + + +E
Sbjct: 241 QEEESIDDELDVLREIEAEEAGIGPIEEEVVDSQAANDEP 280
Score = 28.6 bits (64), Expect = 0.61
Identities = 12/42 (28%), Positives = 17/42 (40%)
Query: 20 EEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEELQAGGH 61
EEE ++E D E E EE EEE + + +
Sbjct: 242 EEESIDDELDVLREIEAEEAGIGPIEEEVVDSQAANDEPRRV 283
Score = 28.6 bits (64), Expect = 0.73
Identities = 13/46 (28%), Positives = 27/46 (58%)
Query: 5 EEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEE 50
EE + +EK E ++++E+E+DEE +EE E++++ +
Sbjct: 316 IHEEIPKLDEKSLSEFLGYMGGIDEDDEDEDDEESKEEVEKKQKVK 361
Score = 27.1 bits (60), Expect = 2.5
Identities = 13/51 (25%), Positives = 28/51 (54%)
Query: 11 EEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEELQAGGH 61
EE + +E+ E +E+DE+E++EE +EE E++++ + +
Sbjct: 317 HEEIPKLDEKSLSEFLGYMGGIDEDDEDEDDEESKEEVEKKQKVKKKPRKR 367
Score = 25.9 bits (57), Expect = 6.5
Identities = 14/61 (22%), Positives = 26/61 (42%), Gaps = 1/61 (1%)
Query: 1 MGKREEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEE-EEEEEELQAG 59
M + E E + EE + +E E +E++E+E+ EE +EE++
Sbjct: 298 MRPVRAKPSDEPSLPESDIHEEIPKLDEKSLSEFLGYMGGIDEDDEDEDDEESKEEVEKK 357
Query: 60 G 60
Sbjct: 358 Q 358
>gnl|CDD|216110 pfam00771, FHIPEP, FHIPEP family.
Length = 658
Score = 33.6 bits (78), Expect = 0.015
Identities = 11/32 (34%), Positives = 17/32 (53%)
Query: 1 MGKREEEEEKEEEEKEEEEEEEEEEEEEDEEE 32
+ KR+ +E E E + E E E EEE ++
Sbjct: 295 LSKRKRQEAAEAEAEAAEAEAAAEPEEESWDD 326
Score = 27.8 bits (63), Expect = 1.4
Identities = 13/40 (32%), Positives = 19/40 (47%)
Query: 20 EEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEELQAG 59
+ +E E E E E E E EEE ++ + EL+ G
Sbjct: 299 KRQEAAEAEAEAAEAEAAAEPEEESWDDVLPVDPLELELG 338
>gnl|CDD|237549 PRK13897, PRK13897, type IV secretion system component VirD4;
Provisional.
Length = 606
Score = 33.6 bits (77), Expect = 0.015
Identities = 11/29 (37%), Positives = 17/29 (58%)
Query: 10 KEEEEKEEEEEEEEEEEEEDEEEEEEDEE 38
E +E E E EEDEE+++ED++
Sbjct: 578 NNEASEETETITVPENNEEDEEDDDEDDD 606
Score = 33.6 bits (77), Expect = 0.016
Identities = 10/31 (32%), Positives = 17/31 (54%)
Query: 3 KREEEEEKEEEEKEEEEEEEEEEEEEDEEEE 33
E +E E E EE+EE++DE+++
Sbjct: 576 ANNNEASEETETITVPENNEEDEEDDDEDDD 606
Score = 32.8 bits (75), Expect = 0.028
Identities = 10/29 (34%), Positives = 18/29 (62%)
Query: 13 EEKEEEEEEEEEEEEEDEEEEEEDEEEEE 41
+ EE E E +EE+EE+D+E+++
Sbjct: 578 NNEASEETETITVPENNEEDEEDDDEDDD 606
Score = 32.5 bits (74), Expect = 0.035
Identities = 10/29 (34%), Positives = 18/29 (62%)
Query: 20 EEEEEEEEEDEEEEEEDEEEEEEEEEEEE 48
E EE E E +EE+EE+++E+++
Sbjct: 578 NNEASEETETITVPENNEEDEEDDDEDDD 606
Score = 31.7 bits (72), Expect = 0.059
Identities = 10/29 (34%), Positives = 17/29 (58%)
Query: 26 EEEDEEEEEEDEEEEEEEEEEEEEEEEEE 54
E EE E E EE+EE+++E+++
Sbjct: 578 NNEASEETETITVPENNEEDEEDDDEDDD 606
Score = 31.7 bits (72), Expect = 0.069
Identities = 10/32 (31%), Positives = 17/32 (53%)
Query: 9 EKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEE 40
E EE E E +E+EE++DE+++
Sbjct: 575 RANNNEASEETETITVPENNEEDEEDDDEDDD 606
Score = 31.3 bits (71), Expect = 0.076
Identities = 12/38 (31%), Positives = 20/38 (52%)
Query: 8 EEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEE 45
+E + E EE E E EEDEE+++E+++
Sbjct: 569 QEPYDPRANNNEASEETETITVPENNEEDEEDDDEDDD 606
Score = 31.3 bits (71), Expect = 0.079
Identities = 11/29 (37%), Positives = 17/29 (58%)
Query: 6 EEEEKEEEEKEEEEEEEEEEEEEDEEEEE 34
E EE E E EE+EE+D+E+++
Sbjct: 578 NNEASEETETITVPENNEEDEEDDDEDDD 606
Score = 30.5 bits (69), Expect = 0.15
Identities = 9/29 (31%), Positives = 17/29 (58%)
Query: 19 EEEEEEEEEEDEEEEEEDEEEEEEEEEEE 47
E EE E E +E+EE+++E+++
Sbjct: 578 NNEASEETETITVPENNEEDEEDDDEDDD 606
Score = 30.5 bits (69), Expect = 0.16
Identities = 10/29 (34%), Positives = 17/29 (58%)
Query: 25 EEEEDEEEEEEDEEEEEEEEEEEEEEEEE 53
E EE E E EE+EE+++E+++
Sbjct: 578 NNEASEETETITVPENNEEDEEDDDEDDD 606
Score = 30.5 bits (69), Expect = 0.16
Identities = 11/32 (34%), Positives = 18/32 (56%)
Query: 4 REEEEEKEEEEKEEEEEEEEEEEEEDEEEEEE 35
R E EE + E EE+EED++E+++
Sbjct: 575 RANNNEASEETETITVPENNEEDEEDDDEDDD 606
Score = 30.5 bits (69), Expect = 0.16
Identities = 9/25 (36%), Positives = 16/25 (64%)
Query: 31 EEEEEDEEEEEEEEEEEEEEEEEEE 55
EE E E EE+EE+++E+++
Sbjct: 582 SEETETITVPENNEEDEEDDDEDDD 606
Score = 30.5 bits (69), Expect = 0.17
Identities = 9/29 (31%), Positives = 17/29 (58%)
Query: 18 EEEEEEEEEEEDEEEEEEDEEEEEEEEEE 46
E EE E E E++EE+++E+++
Sbjct: 578 NNEASEETETITVPENNEEDEEDDDEDDD 606
Score = 29.8 bits (67), Expect = 0.25
Identities = 9/27 (33%), Positives = 16/27 (59%)
Query: 2 GKREEEEEKEEEEKEEEEEEEEEEEEE 28
EE E E EE+EE+++E+++
Sbjct: 580 EASEETETITVPENNEEDEEDDDEDDD 606
Score = 29.8 bits (67), Expect = 0.32
Identities = 9/29 (31%), Positives = 17/29 (58%)
Query: 22 EEEEEEEDEEEEEEDEEEEEEEEEEEEEE 50
E EE E + EE+EE+++E+++
Sbjct: 578 NNEASEETETITVPENNEEDEEDDDEDDD 606
Score = 29.0 bits (65), Expect = 0.51
Identities = 9/29 (31%), Positives = 17/29 (58%)
Query: 24 EEEEEDEEEEEEDEEEEEEEEEEEEEEEE 52
E +E E E EE+EE+++E+++
Sbjct: 578 NNEASEETETITVPENNEEDEEDDDEDDD 606
Score = 29.0 bits (65), Expect = 0.60
Identities = 9/28 (32%), Positives = 17/28 (60%)
Query: 2 GKREEEEEKEEEEKEEEEEEEEEEEEED 29
+ EE E + EE+EE+++E++D
Sbjct: 579 NEASEETETITVPENNEEDEEDDDEDDD 606
Score = 29.0 bits (65), Expect = 0.63
Identities = 9/29 (31%), Positives = 17/29 (58%)
Query: 23 EEEEEEDEEEEEEDEEEEEEEEEEEEEEE 51
E E+ E E EE+EE+++E+++
Sbjct: 578 NNEASEETETITVPENNEEDEEDDDEDDD 606
Score = 28.2 bits (63), Expect = 1.0
Identities = 9/29 (31%), Positives = 18/29 (62%)
Query: 21 EEEEEEEEDEEEEEEDEEEEEEEEEEEEE 49
E EE + E+ EE+EE+++E+++
Sbjct: 578 NNEASEETETITVPENNEEDEEDDDEDDD 606
Score = 27.5 bits (61), Expect = 2.0
Identities = 9/28 (32%), Positives = 17/28 (60%)
Query: 28 EDEEEEEEDEEEEEEEEEEEEEEEEEEE 55
+E EE + E EE+EE+++E++
Sbjct: 578 NNEASEETETITVPENNEEDEEDDDEDD 605
Score = 25.5 bits (56), Expect = 9.1
Identities = 8/28 (28%), Positives = 13/28 (46%)
Query: 28 EDEEEEEEDEEEEEEEEEEEEEEEEEEE 55
E +E E E EE+EE+++
Sbjct: 575 RANNNEASEETETITVPENNEEDEEDDD 602
>gnl|CDD|233199 TIGR00939, 2a57, Equilibrative Nucleoside Transporter (ENT).
[Transport and binding proteins, Nucleosides, purines
and pyrimidines].
Length = 437
Score = 33.2 bits (76), Expect = 0.017
Identities = 11/75 (14%), Positives = 27/75 (36%), Gaps = 9/75 (12%)
Query: 3 KREEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEELQAG--- 59
K+ ++ E+E K E + E+ ++ + E+E E +E ++ L+
Sbjct: 207 KKLDKGAGEDETKGELRSKAEQNGIPHGGDQPSPTLVLDWEKEPESPDEPQKPLKTSVWV 266
Query: 60 ------GHGIAICQC 68
++
Sbjct: 267 VFTKVWLLAFSVVFV 281
>gnl|CDD|225962 COG3428, COG3428, Predicted membrane protein [Function unknown].
Length = 494
Score = 33.2 bits (76), Expect = 0.017
Identities = 14/62 (22%), Positives = 20/62 (32%), Gaps = 1/62 (1%)
Query: 2 GKREEEEEKEEEEKEEEEEEEEEEEEE-DEEEEEEDEEEEEEEEEEEEEEEEEEELQAGG 60
G+ E E + E E E ++ D E E + EEE E +
Sbjct: 123 GEAEAELVEREIAFELAALVREARVKKLDALELAEADTPEEEVAEVLARSQSSVLRYPMN 182
Query: 61 HG 62
G
Sbjct: 183 KG 184
Score = 30.9 bits (70), Expect = 0.11
Identities = 14/57 (24%), Positives = 18/57 (31%)
Query: 2 GKREEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEELQA 58
G E E E E E E E + + E E + EEE E +
Sbjct: 121 GGGEAEAELVEREIAFELAALVREARVKKLDALELAEADTPEEEVAEVLARSQSSVL 177
Score = 29.7 bits (67), Expect = 0.32
Identities = 9/49 (18%), Positives = 15/49 (30%)
Query: 5 EEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEE 53
E E ++ + E E + EEE E + + E
Sbjct: 137 ELAALVREARVKKLDALELAEADTPEEEVAEVLARSQSSVLRYPMNKGE 185
Score = 28.9 bits (65), Expect = 0.61
Identities = 8/51 (15%), Positives = 15/51 (29%)
Query: 2 GKREEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEE 52
+E K+ + E E + +EE E + + E
Sbjct: 135 AFELAALVREARVKKLDALELAEADTPEEEVAEVLARSQSSVLRYPMNKGE 185
>gnl|CDD|224217 COG1298, FlhA, Flagellar biosynthesis pathway, component FlhA [Cell
motility and secretion / Intracellular trafficking and
secretion].
Length = 696
Score = 33.4 bits (77), Expect = 0.018
Identities = 16/42 (38%), Positives = 28/42 (66%)
Query: 15 KEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEEL 56
K +E++ EE+E+ +E ++EE+EEEEE ++ + E EL
Sbjct: 325 KRKEQQAEEKEKPAEEAKKEEEEEEEESVDDVLLIDPIELEL 366
Score = 32.6 bits (75), Expect = 0.034
Identities = 17/40 (42%), Positives = 26/40 (65%)
Query: 7 EEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEE 46
+E++ EEKE+ EE ++EEEE+EEE +D + E E
Sbjct: 326 RKEQQAEEKEKPAEEAKKEEEEEEEESVDDVLLIDPIELE 365
Score = 30.7 bits (70), Expect = 0.14
Identities = 15/40 (37%), Positives = 25/40 (62%)
Query: 12 EEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEE 51
+E++ EE+E+ EE + EEEEEE+E ++ + E E
Sbjct: 326 RKEQQAEEKEKPAEEAKKEEEEEEEESVDDVLLIDPIELE 365
Score = 30.3 bits (69), Expect = 0.18
Identities = 17/39 (43%), Positives = 25/39 (64%)
Query: 3 KREEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEE 41
K ++ EEKE+ +E ++EEEEEEEE ++ D E E
Sbjct: 327 KEQQAEEKEKPAEEAKKEEEEEEEESVDDVLLIDPIELE 365
Score = 30.3 bits (69), Expect = 0.19
Identities = 15/41 (36%), Positives = 27/41 (65%)
Query: 10 KEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEE 50
K +E++ EE+E+ EE +++EEEEEE+ ++ + E E
Sbjct: 325 KRKEQQAEEKEKPAEEAKKEEEEEEEESVDDVLLIDPIELE 365
Score = 30.3 bits (69), Expect = 0.20
Identities = 16/40 (40%), Positives = 26/40 (65%)
Query: 14 EKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEE 53
KE++ EE+E+ EE ++EEEE+EEE ++ + E E
Sbjct: 326 RKEQQAEEKEKPAEEAKKEEEEEEEESVDDVLLIDPIELE 365
Score = 30.3 bits (69), Expect = 0.21
Identities = 16/42 (38%), Positives = 28/42 (66%)
Query: 18 EEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEELQAG 59
+E++ EE+E+ EE +++EEEEEEE ++ + EL+ G
Sbjct: 326 RKEQQAEEKEKPAEEAKKEEEEEEEESVDDVLLIDPIELELG 367
Score = 28.8 bits (65), Expect = 0.59
Identities = 12/34 (35%), Positives = 23/34 (67%)
Query: 2 GKREEEEEKEEEEKEEEEEEEEEEEEEDEEEEEE 35
+++ EE+++ E+ ++EEEEEEEE D+ +
Sbjct: 327 KEQQAEEKEKPAEEAKKEEEEEEEESVDDVLLID 360
>gnl|CDD|185618 PTZ00438, PTZ00438, gamete antigen 27/25-like protein; Provisional.
Length = 374
Score = 33.1 bits (75), Expect = 0.018
Identities = 26/65 (40%), Positives = 39/65 (60%)
Query: 3 KREEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEELQAGGHG 62
K EEE+E EE +E EE E EEE +D+E+ E+D+E+E + E +E E E ++
Sbjct: 107 KEEEEDEDVEEIEEVEEVEVVEEEYDDDEDSEKDDEKESDAEGDENELAGEYIIEEVDDD 166
Query: 63 IAICQ 67
+AI
Sbjct: 167 VAILN 171
Score = 32.0 bits (72), Expect = 0.043
Identities = 22/49 (44%), Positives = 37/49 (75%)
Query: 8 EEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEEL 56
+++EEE+++ EE EE EE E EEE ++DE+ E+++E+E + E +E EL
Sbjct: 106 QKEEEEDEDVEEIEEVEEVEVVEEEYDDDEDSEKDDEKESDAEGDENEL 154
Score = 31.2 bits (70), Expect = 0.094
Identities = 26/57 (45%), Positives = 38/57 (66%)
Query: 3 KREEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEELQAG 59
+ E +KEEEE E+ EE EE EE E EEE +D+E+ E+++E+E + E +E AG
Sbjct: 100 EEERGTQKEEEEDEDVEEIEEVEEVEVVEEEYDDDEDSEKDDEKESDAEGDENELAG 156
Score = 30.0 bits (67), Expect = 0.22
Identities = 23/56 (41%), Positives = 39/56 (69%)
Query: 5 EEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEELQAGG 60
EE ++EEE++E+ EE EE EE + EEE D++E+ E+++E+E + E +E + G
Sbjct: 101 EERGTQKEEEEDEDVEEIEEVEEVEVVEEEYDDDEDSEKDDEKESDAEGDENELAG 156
Score = 28.9 bits (64), Expect = 0.59
Identities = 23/50 (46%), Positives = 36/50 (72%)
Query: 11 EEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEELQAGG 60
EEE ++EEEE+E+ EE EE EE + EEE +++E+ E+++E+E A G
Sbjct: 100 EEERGTQKEEEEDEDVEEIEEVEEVEVVEEEYDDDEDSEKDDEKESDAEG 149
>gnl|CDD|227391 COG5058, LAG1, Protein transporter of the TRAM (translocating
chain-associating membrane) superfamily, longevity
assurance factor [Intracellular trafficking and
secretion].
Length = 395
Score = 33.3 bits (76), Expect = 0.018
Identities = 11/27 (40%), Positives = 17/27 (62%)
Query: 19 EEEEEEEEEEDEEEEEEDEEEEEEEEE 45
E E ++E +DE EEE D E E++ +
Sbjct: 369 EGELKDERSDDESEEESDLESSEDKND 395
Score = 33.3 bits (76), Expect = 0.019
Identities = 10/27 (37%), Positives = 17/27 (62%)
Query: 24 EEEEEDEEEEEEDEEEEEEEEEEEEEE 50
E E +DE ++E EEE + E E++ +
Sbjct: 369 EGELKDERSDDESEEESDLESSEDKND 395
Score = 32.5 bits (74), Expect = 0.035
Identities = 10/24 (41%), Positives = 15/24 (62%)
Query: 31 EEEEEDEEEEEEEEEEEEEEEEEE 54
E E +DE ++E EEE + E E+
Sbjct: 369 EGELKDERSDDESEEESDLESSED 392
Score = 31.7 bits (72), Expect = 0.057
Identities = 10/27 (37%), Positives = 17/27 (62%)
Query: 26 EEEDEEEEEEDEEEEEEEEEEEEEEEE 52
E E ++E +DE EEE + E E++ +
Sbjct: 369 EGELKDERSDDESEEESDLESSEDKND 395
Score = 31.0 bits (70), Expect = 0.12
Identities = 9/27 (33%), Positives = 17/27 (62%)
Query: 27 EEDEEEEEEDEEEEEEEEEEEEEEEEE 53
E + ++E D+E EEE + E E++ +
Sbjct: 369 EGELKDERSDDESEEESDLESSEDKND 395
Score = 30.6 bits (69), Expect = 0.17
Identities = 10/27 (37%), Positives = 16/27 (59%)
Query: 12 EEEKEEEEEEEEEEEEEDEEEEEEDEE 38
E E ++E ++E EEE D E E+ +
Sbjct: 369 EGELKDERSDDESEEESDLESSEDKND 395
Score = 30.2 bits (68), Expect = 0.18
Identities = 9/34 (26%), Positives = 20/34 (58%)
Query: 1 MGKREEEEEKEEEEKEEEEEEEEEEEEEDEEEEE 34
+ R E + ++E+ ++E EEE + E E++ +
Sbjct: 362 VAYRVIWEGELKDERSDDESEEESDLESSEDKND 395
Score = 30.2 bits (68), Expect = 0.23
Identities = 10/27 (37%), Positives = 17/27 (62%)
Query: 20 EEEEEEEEEDEEEEEEDEEEEEEEEEE 46
E E ++E D+E EEE + E E++ +
Sbjct: 369 EGELKDERSDDESEEESDLESSEDKND 395
Score = 29.8 bits (67), Expect = 0.29
Identities = 7/27 (25%), Positives = 17/27 (62%)
Query: 23 EEEEEEDEEEEEEDEEEEEEEEEEEEE 49
E E +++ ++E +EE + E E++ +
Sbjct: 369 EGELKDERSDDESEEESDLESSEDKND 395
Score = 29.4 bits (66), Expect = 0.36
Identities = 10/27 (37%), Positives = 18/27 (66%)
Query: 11 EEEEKEEEEEEEEEEEEEDEEEEEEDE 37
E E K+E ++E EEE + E E++++
Sbjct: 369 EGELKDERSDDESEEESDLESSEDKND 395
Score = 29.0 bits (65), Expect = 0.55
Identities = 8/27 (29%), Positives = 17/27 (62%)
Query: 22 EEEEEEEDEEEEEEDEEEEEEEEEEEE 48
E E ++E ++E E+E + E E++ +
Sbjct: 369 EGELKDERSDDESEEESDLESSEDKND 395
Score = 28.7 bits (64), Expect = 0.60
Identities = 8/27 (29%), Positives = 17/27 (62%)
Query: 16 EEEEEEEEEEEEEDEEEEEEDEEEEEE 42
E E ++E ++E +EE + E E++ +
Sbjct: 369 EGELKDERSDDESEEESDLESSEDKND 395
Score = 28.7 bits (64), Expect = 0.61
Identities = 9/27 (33%), Positives = 17/27 (62%)
Query: 28 EDEEEEEEDEEEEEEEEEEEEEEEEEE 54
E E ++E ++E EEE + E E++ +
Sbjct: 369 EGELKDERSDDESEEESDLESSEDKND 395
>gnl|CDD|218055 pfam04386, SspB, Stringent starvation protein B. Escherichia coli
stringent starvation protein B (SspB), is thought to
enhance the specificity of degradation of tmRNA-tagged
proteins by the ClpXP protease. The tmRNA tag, also
known as ssrA, is an 11-aa peptide added to the C
terminus of proteins stalled during translation, targets
proteins for degradation by ClpXP and ClpAP. SspB a
cytoplasmic protein that specifically binds to residues
1-4 and 7 of the tag. Binding of SspB enhances
degradation of tagged proteins by ClpX, and masks
sequence elements important for ClpA interactions,
inhibiting degradation by ClpA. However, more recent
work has cast doubt on the importance of SspB in
wild-type cells. SspB is encoded in an operon whose
synthesis is stimulated by carbon, amino acid, and
phosphate starvation. SspB may play a special role
during nutrient stress, for example by ensuring rapid
degradation of the products of stalled translation,
without causing a global increase in degradation of all
ClpXP substrates.
Length = 153
Score = 32.6 bits (75), Expect = 0.020
Identities = 12/40 (30%), Positives = 26/40 (65%)
Query: 18 EEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEELQ 57
E EE +EEEEE++++ ++ E+E+ E ++ + + L+
Sbjct: 111 EPEEADEEEEEEDDDADDSPEDEDPEPKDPPKTKGRPSLK 150
Score = 32.2 bits (74), Expect = 0.032
Identities = 14/39 (35%), Positives = 24/39 (61%)
Query: 24 EEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEELQAGGHG 62
E EE DEEEEEED++ ++ E+E+ E ++ + +
Sbjct: 111 EPEEADEEEEEEDDDADDSPEDEDPEPKDPPKTKGRPSL 149
Score = 31.8 bits (73), Expect = 0.038
Identities = 12/39 (30%), Positives = 24/39 (61%)
Query: 20 EEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEELQA 58
E EE +EEE+EE+++ D+ E+E+ E ++ + +
Sbjct: 111 EPEEADEEEEEEDDDADDSPEDEDPEPKDPPKTKGRPSL 149
Score = 31.8 bits (73), Expect = 0.042
Identities = 12/36 (33%), Positives = 24/36 (66%)
Query: 16 EEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEE 51
E EE +EEEEEE+D+ ++ ++E+ E ++ + +
Sbjct: 111 EPEEADEEEEEEDDDADDSPEDEDPEPKDPPKTKGR 146
Score = 31.0 bits (71), Expect = 0.064
Identities = 13/36 (36%), Positives = 24/36 (66%)
Query: 17 EEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEE 52
E EE +EEEEEED++ ++ E+E+ E ++ + +
Sbjct: 111 EPEEADEEEEEEDDDADDSPEDEDPEPKDPPKTKGR 146
Score = 29.9 bits (68), Expect = 0.21
Identities = 12/36 (33%), Positives = 24/36 (66%)
Query: 12 EEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEE 47
E E+ +EEEEEE+++ +D E+E+ E ++ + +
Sbjct: 111 EPEEADEEEEEEDDDADDSPEDEDPEPKDPPKTKGR 146
Score = 28.7 bits (65), Expect = 0.43
Identities = 11/36 (30%), Positives = 24/36 (66%)
Query: 11 EEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEE 46
E EE +EEEEEE+++ ++ E+E+ + ++ + +
Sbjct: 111 EPEEADEEEEEEDDDADDSPEDEDPEPKDPPKTKGR 146
Score = 28.3 bits (64), Expect = 0.63
Identities = 11/36 (30%), Positives = 22/36 (61%)
Query: 5 EEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEE 40
E EE EEEE+E+++ ++ E+E+ E ++ +
Sbjct: 111 EPEEADEEEEEEDDDADDSPEDEDPEPKDPPKTKGR 146
Score = 27.9 bits (63), Expect = 0.91
Identities = 12/36 (33%), Positives = 24/36 (66%)
Query: 6 EEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEE 41
E EE +EEE+EE+++ ++ E+ED E ++ + +
Sbjct: 111 EPEEADEEEEEEDDDADDSPEDEDPEPKDPPKTKGR 146
>gnl|CDD|145949 pfam03066, Nucleoplasmin, Nucleoplasmin. Nucleoplasmins are also
known as chromatin decondensation proteins. They bind to
core histones and transfer DNA to them in a reaction
that requires ATP. This is thought to play a role in the
assembly of regular nucleosomal arrays.
Length = 146
Score = 32.3 bits (74), Expect = 0.021
Identities = 17/31 (54%), Positives = 28/31 (90%)
Query: 22 EEEEEEEDEEEEEEDEEEEEEEEEEEEEEEE 52
EE+E +D+EE+EE+E++EE+++E+E EEEE
Sbjct: 109 SEEDESDDDEEDEEEEDDEEDDDEDESEEEE 139
Score = 31.9 bits (73), Expect = 0.038
Identities = 17/31 (54%), Positives = 28/31 (90%)
Query: 19 EEEEEEEEEEDEEEEEEDEEEEEEEEEEEEE 49
EE+E +++E++EEEE+DEE+++E+E EEEE
Sbjct: 109 SEEDESDDDEEDEEEEDDEEDDDEDESEEEE 139
Score = 31.5 bits (72), Expect = 0.041
Identities = 17/31 (54%), Positives = 28/31 (90%)
Query: 16 EEEEEEEEEEEEEDEEEEEEDEEEEEEEEEE 46
EE+E +++EE+E+EE++EED++E+E EEEE
Sbjct: 109 SEEDESDDDEEDEEEEDDEEDDDEDESEEEE 139
Score = 31.5 bits (72), Expect = 0.042
Identities = 19/31 (61%), Positives = 27/31 (87%)
Query: 12 EEEKEEEEEEEEEEEEEDEEEEEEDEEEEEE 42
EE E +++EE+EEEE+DEE+++EDE EEEE
Sbjct: 109 SEEDESDDDEEDEEEEDDEEDDDEDESEEEE 139
Score = 31.5 bits (72), Expect = 0.044
Identities = 17/31 (54%), Positives = 28/31 (90%)
Query: 18 EEEEEEEEEEEDEEEEEEDEEEEEEEEEEEE 48
EE+E +++EEDEEEE+++E+++E+E EEEE
Sbjct: 109 SEEDESDDDEEDEEEEDDEEDDDEDESEEEE 139
Score = 31.5 bits (72), Expect = 0.044
Identities = 17/31 (54%), Positives = 28/31 (90%)
Query: 21 EEEEEEEEDEEEEEEDEEEEEEEEEEEEEEE 51
EE+E ++DEE+EEE+++EE+++E+E EEEE
Sbjct: 109 SEEDESDDDEEDEEEEDDEEDDDEDESEEEE 139
Score = 31.5 bits (72), Expect = 0.049
Identities = 17/31 (54%), Positives = 28/31 (90%)
Query: 20 EEEEEEEEEDEEEEEEDEEEEEEEEEEEEEE 50
EE+E ++++E+EEEED+EE+++E+E EEEE
Sbjct: 109 SEEDESDDDEEDEEEEDDEEDDDEDESEEEE 139
Score = 31.5 bits (72), Expect = 0.052
Identities = 17/31 (54%), Positives = 28/31 (90%)
Query: 23 EEEEEEDEEEEEEDEEEEEEEEEEEEEEEEE 53
EE+E D++EE+E+EE++EE+++E+E EEEE
Sbjct: 109 SEEDESDDDEEDEEEEDDEEDDDEDESEEEE 139
Score = 31.1 bits (71), Expect = 0.061
Identities = 17/34 (50%), Positives = 28/34 (82%)
Query: 25 EEEEDEEEEEEDEEEEEEEEEEEEEEEEEEELQA 58
EE++ +++EEDEEEE++EE+++E+E EEEE
Sbjct: 109 SEEDESDDDEEDEEEEDDEEDDDEDESEEEESPV 142
Score = 31.1 bits (71), Expect = 0.069
Identities = 16/31 (51%), Positives = 28/31 (90%)
Query: 24 EEEEEDEEEEEEDEEEEEEEEEEEEEEEEEE 54
EE+E +++EE++EEE++EE+++E+E EEEE
Sbjct: 109 SEEDESDDDEEDEEEEDDEEDDDEDESEEEE 139
Score = 30.8 bits (70), Expect = 0.090
Identities = 16/31 (51%), Positives = 28/31 (90%)
Query: 14 EKEEEEEEEEEEEEEDEEEEEEDEEEEEEEE 44
+E+E +++EE+EEE+++EE++DE+E EEEE
Sbjct: 109 SEEDESDDDEEDEEEEDDEEDDDEDESEEEE 139
Score = 30.4 bits (69), Expect = 0.10
Identities = 16/31 (51%), Positives = 28/31 (90%)
Query: 13 EEKEEEEEEEEEEEEEDEEEEEEDEEEEEEE 43
E++E +++EE+EEEED+EE+++++E EEEE
Sbjct: 109 SEEDESDDDEEDEEEEDDEEDDDEDESEEEE 139
Score = 30.4 bits (69), Expect = 0.13
Identities = 15/31 (48%), Positives = 28/31 (90%)
Query: 17 EEEEEEEEEEEEDEEEEEEDEEEEEEEEEEE 47
EE+E +++EE++EEE++E++++E+E EEEE
Sbjct: 109 SEEDESDDDEEDEEEEDDEEDDDEDESEEEE 139
Score = 30.0 bits (68), Expect = 0.15
Identities = 16/31 (51%), Positives = 27/31 (87%)
Query: 9 EKEEEEKEEEEEEEEEEEEEDEEEEEEDEEE 39
+E+E ++EE+EEEE++EED++E+E +EEE
Sbjct: 109 SEEDESDDDEEDEEEEDDEEDDDEDESEEEE 139
Score = 30.0 bits (68), Expect = 0.16
Identities = 14/31 (45%), Positives = 28/31 (90%)
Query: 11 EEEEKEEEEEEEEEEEEEDEEEEEEDEEEEE 41
EE++ +++EE+EEEE+++E+++E++ EEEE
Sbjct: 109 SEEDESDDDEEDEEEEDDEEDDDEDESEEEE 139
Score = 29.6 bits (67), Expect = 0.24
Identities = 17/31 (54%), Positives = 26/31 (83%)
Query: 7 EEEKEEEEKEEEEEEEEEEEEEDEEEEEEDE 37
EE E ++ EE+EEEE++EE++DE+E EE+E
Sbjct: 109 SEEDESDDDEEDEEEEDDEEDDDEDESEEEE 139
Score = 29.6 bits (67), Expect = 0.26
Identities = 17/31 (54%), Positives = 28/31 (90%)
Query: 5 EEEEEKEEEEKEEEEEEEEEEEEEDEEEEEE 35
EE+E +++E++EEEE++EE+++EDE EEEE
Sbjct: 109 SEEDESDDDEEDEEEEDDEEDDDEDESEEEE 139
Score = 28.8 bits (65), Expect = 0.45
Identities = 16/31 (51%), Positives = 27/31 (87%)
Query: 8 EEKEEEEKEEEEEEEEEEEEEDEEEEEEDEE 38
E++E + +EE+EEEE++EE+D+E+E E+EE
Sbjct: 109 SEEDESDDDEEDEEEEDDEEDDDEDESEEEE 139
Score = 28.4 bits (64), Expect = 0.66
Identities = 15/33 (45%), Positives = 27/33 (81%)
Query: 1 MGKREEEEEKEEEEKEEEEEEEEEEEEEDEEEE 33
+ E+E + +EE++EEE++EE+++E+E EEEE
Sbjct: 107 VASEEDESDDDEEDEEEEDDEEDDDEDESEEEE 139
>gnl|CDD|227563 COG5238, RNA1, Ran GTPase-activating protein (RanGAP) involved in
mRNA processing and transport [Signal transduction
mechanisms / RNA processing and modification].
Length = 388
Score = 33.0 bits (75), Expect = 0.022
Identities = 19/51 (37%), Positives = 27/51 (52%)
Query: 6 EEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEEL 56
E EK+E + EE +EE E+E E +E EE E E E + ++ E L
Sbjct: 333 EVVEKQEGDVVTEESTDEESEDEVEIDESVIEEVAEMELLEVQVDDLAERL 383
Score = 32.2 bits (73), Expect = 0.036
Identities = 16/49 (32%), Positives = 25/49 (51%)
Query: 4 REEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEE 52
E++E + +E +EE E+E E DE EE E E E + ++ E
Sbjct: 334 VVEKQEGDVVTEESTDEESEDEVEIDESVIEEVAEMELLEVQVDDLAER 382
Score = 31.1 bits (70), Expect = 0.093
Identities = 19/50 (38%), Positives = 27/50 (54%)
Query: 8 EEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEELQ 57
E+ E + E++E + EE +EE EDE E +E EE E E E+Q
Sbjct: 326 EDIFEVVEVVEKQEGDVVTEESTDEESEDEVEIDESVIEEVAEMELLEVQ 375
Score = 31.1 bits (70), Expect = 0.10
Identities = 18/49 (36%), Positives = 26/49 (53%)
Query: 5 EEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEE 53
E E E++E + EE +EE EDE E +E EE E E E + ++
Sbjct: 330 EVVEVVEKQEGDVVTEESTDEESEDEVEIDESVIEEVAEMELLEVQVDD 378
Score = 29.9 bits (67), Expect = 0.30
Identities = 17/52 (32%), Positives = 26/52 (50%)
Query: 4 REEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEE 55
+ E E EK+E + EE +E+ E+E E +E EE E E E + +
Sbjct: 326 EDIFEVVEVVEKQEGDVVTEESTDEESEDEVEIDESVIEEVAEMELLEVQVD 377
Score = 29.1 bits (65), Expect = 0.44
Identities = 16/51 (31%), Positives = 26/51 (50%)
Query: 6 EEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEEL 56
+E + EE +EE E+E E +E EE + E E + ++ E E E+
Sbjct: 338 QEGDVVTEESTDEESEDEVEIDESVIEEVAEMELLEVQVDDLAERLAETEI 388
Score = 28.7 bits (64), Expect = 0.58
Identities = 17/53 (32%), Positives = 27/53 (50%)
Query: 2 GKREEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEE 54
+++E + EE +EE E+E E +E EE E E E + ++ E E E
Sbjct: 335 VEKQEGDVVTEESTDEESEDEVEIDESVIEEVAEMELLEVQVDDLAERLAETE 387
Score = 28.4 bits (63), Expect = 0.97
Identities = 15/51 (29%), Positives = 26/51 (50%)
Query: 4 REEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEE 54
E E++E + EE +EE E+E + +E +E E E E + ++ E
Sbjct: 332 VEVVEKQEGDVVTEESTDEESEDEVEIDESVIEEVAEMELLEVQVDDLAER 382
>gnl|CDD|227504 COG5177, COG5177, Uncharacterized conserved protein [Function
unknown].
Length = 769
Score = 33.1 bits (75), Expect = 0.022
Identities = 17/51 (33%), Positives = 27/51 (52%)
Query: 5 EEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEE 55
EE+ + +EE ++++ +E D EE DEE ++ E EE EEE
Sbjct: 398 EEDGQCNDEESTMSAIDDDDPKENDNEEVAGDEESAIDDNEGFEELSPEEE 448
Score = 32.7 bits (74), Expect = 0.026
Identities = 18/54 (33%), Positives = 29/54 (53%)
Query: 4 REEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEELQ 57
+E + E+ ++E ++ E EE EEEE E + E+E+ E +E ELQ
Sbjct: 419 KENDNEEVAGDEESAIDDNEGFEELSPEEEERQLREFRDMEKEDREFPDEAELQ 472
Score = 31.6 bits (71), Expect = 0.067
Identities = 17/50 (34%), Positives = 25/50 (50%)
Query: 5 EEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEE 54
+EE + ++ +E + EE DEE +D E EE EEEE + E
Sbjct: 405 DEESTMSAIDDDDPKENDNEEVAGDEESAIDDNEGFEELSPEEEERQLRE 454
Score = 31.6 bits (71), Expect = 0.075
Identities = 16/51 (31%), Positives = 27/51 (52%)
Query: 7 EEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEELQ 57
+++ +E EE +EE +D E EE EEEE + E + E+E+ +
Sbjct: 414 DDDDPKENDNEEVAGDEESAIDDNEGFEELSPEEEERQLREFRDMEKEDRE 464
Score = 30.4 bits (68), Expect = 0.16
Identities = 20/60 (33%), Positives = 30/60 (50%), Gaps = 8/60 (13%)
Query: 6 EEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEE--------EEEEEEEEELQ 57
E++EEE+ + +EE +D++ +E D EE +EE EE EEEE Q
Sbjct: 392 WAEDEEEEDGQCNDEESTMSAIDDDDPKENDNEEVAGDEESAIDDNEGFEELSPEEEERQ 451
Score = 28.9 bits (64), Expect = 0.57
Identities = 15/49 (30%), Positives = 29/49 (59%)
Query: 6 EEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEE 54
++++ +E + EE +EE +++E EE EEEE + E + E+E+
Sbjct: 414 DDDDPKENDNEEVAGDEESAIDDNEGFEELSPEEEERQLREFRDMEKED 462
Score = 28.9 bits (64), Expect = 0.62
Identities = 14/43 (32%), Positives = 25/43 (58%)
Query: 13 EEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEE 55
+ K E+EEEE+ + DEE ++++ +E + EE +EE
Sbjct: 389 QAKWAEDEEEEDGQCNDEESTMSAIDDDDPKENDNEEVAGDEE 431
Score = 28.9 bits (64), Expect = 0.67
Identities = 17/54 (31%), Positives = 27/54 (50%)
Query: 1 MGKREEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEE 54
K + EE +E+ ++ E EE EEEE + E + E+E+ E +E E
Sbjct: 417 DPKENDNEEVAGDEESAIDDNEGFEELSPEEEERQLREFRDMEKEDREFPDEAE 470
Score = 28.5 bits (63), Expect = 0.80
Identities = 15/51 (29%), Positives = 29/51 (56%)
Query: 5 EEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEE 55
++++ KE + +E +EE ++ + EE EEEE + E + E+E+ E
Sbjct: 414 DDDDPKENDNEEVAGDEESAIDDNEGFEELSPEEEERQLREFRDMEKEDRE 464
Score = 27.7 bits (61), Expect = 1.5
Identities = 16/55 (29%), Positives = 28/55 (50%)
Query: 1 MGKREEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEE 55
+ + EE +EE ++ E EE +EEE + E + E+E+ E +E E +
Sbjct: 418 PKENDNEEVAGDEESAIDDNEGFEELSPEEEERQLREFRDMEKEDREFPDEAELQ 472
Score = 27.7 bits (61), Expect = 1.7
Identities = 16/47 (34%), Positives = 24/47 (51%)
Query: 5 EEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEE 51
+EE ++ E EE EEEE + E + E E+ E +E E + E
Sbjct: 429 DEESAIDDNEGFEELSPEEEERQLREFRDMEKEDREFPDEAELQPSE 475
Score = 27.0 bits (59), Expect = 2.6
Identities = 16/51 (31%), Positives = 25/51 (49%)
Query: 3 KREEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEE 53
+ +EE ++ E EE EEEE E + E+E+ E +E E + E
Sbjct: 425 EVAGDEESAIDDNEGFEELSPEEEERQLREFRDMEKEDREFPDEAELQPSE 475
>gnl|CDD|237258 PRK12903, secA, preprotein translocase subunit SecA; Reviewed.
Length = 925
Score = 33.1 bits (76), Expect = 0.022
Identities = 18/56 (32%), Positives = 30/56 (53%)
Query: 1 MGKREEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEEL 56
M R EE E EE++ ++E + E E +E EEE + E + E E + + ++L
Sbjct: 829 MLMRPEELELINEEQKNLKQEIKLELSEIQEAEEEIQNINENKNEFVEFKNDPKKL 884
Score = 31.2 bits (71), Expect = 0.11
Identities = 18/53 (33%), Positives = 29/53 (54%)
Query: 5 EEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEELQ 57
E EEE+ + + + EE EE + EE+ ++E + E E +E EEE+Q
Sbjct: 813 ESEEERLKALRIQREEMLMRPEELELINEEQKNLKQEIKLELSEIQEAEEEIQ 865
Score = 29.6 bits (67), Expect = 0.32
Identities = 17/52 (32%), Positives = 26/52 (50%)
Query: 3 KREEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEE 54
+REE + EE + EE++ ++E E E E EEE + E + E E
Sbjct: 825 QREEMLMRPEELELINEEQKNLKQEIKLELSEIQEAEEEIQNINENKNEFVE 876
Score = 29.6 bits (67), Expect = 0.34
Identities = 16/51 (31%), Positives = 26/51 (50%)
Query: 5 EEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEE 55
EE + ++EE EE E +EE++ +E + E E +E EEE +
Sbjct: 816 EERLKALRIQREEMLMRPEELELINEEQKNLKQEIKLELSEIQEAEEEIQN 866
Score = 29.6 bits (67), Expect = 0.36
Identities = 17/52 (32%), Positives = 26/52 (50%)
Query: 6 EEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEELQ 57
EEE + + EE EE E EE+++ ++E + E E +E EEE
Sbjct: 815 EEERLKALRIQREEMLMRPEELELINEEQKNLKQEIKLELSEIQEAEEEIQN 866
Score = 29.3 bits (66), Expect = 0.53
Identities = 18/53 (33%), Positives = 27/53 (50%)
Query: 3 KREEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEE 55
+ EEE K + EE EE E EE++ ++E + E E +E EEE +
Sbjct: 813 ESEEERLKALRIQREEMLMRPEELELINEEQKNLKQEIKLELSEIQEAEEEIQ 865
Score = 28.9 bits (65), Expect = 0.55
Identities = 15/49 (30%), Positives = 25/49 (51%)
Query: 5 EEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEE 53
++EE EE E EE+++ ++E + E E +E EEE + E
Sbjct: 821 ALRIQREEMLMRPEELELINEEQKNLKQEIKLELSEIQEAEEEIQNINE 869
Score = 28.9 bits (65), Expect = 0.56
Identities = 15/50 (30%), Positives = 24/50 (48%)
Query: 7 EEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEEL 56
+ E+ EE E EE++ +E + E E +E EEE + E + E
Sbjct: 825 QREEMLMRPEELELINEEQKNLKQEIKLELSEIQEAEEEIQNINENKNEF 874
Score = 28.9 bits (65), Expect = 0.68
Identities = 16/52 (30%), Positives = 24/52 (46%)
Query: 4 REEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEE 55
R + + EE EE E EE + ++E + E E +E EEE + E
Sbjct: 818 RLKALRIQREEMLMRPEELELINEEQKNLKQEIKLELSEIQEAEEEIQNINE 869
Score = 27.7 bits (62), Expect = 1.3
Identities = 11/52 (21%), Positives = 25/52 (48%)
Query: 3 KREEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEE 54
+ + + + E+ EE E E+++ +++ + E E +E EEE +
Sbjct: 816 EERLKALRIQREEMLMRPEELELINEEQKNLKQEIKLELSEIQEAEEEIQNI 867
Score = 27.7 bits (62), Expect = 1.7
Identities = 14/54 (25%), Positives = 27/54 (50%)
Query: 4 REEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEELQ 57
+E ++ E E+E + + EE EE + EE++ ++E + E E+Q
Sbjct: 805 QELIDQIIESEEERLKALRIQREEMLMRPEELELINEEQKNLKQEIKLELSEIQ 858
Score = 26.6 bits (59), Expect = 3.6
Identities = 15/54 (27%), Positives = 23/54 (42%)
Query: 1 MGKREEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEE 54
+ + + EE EE E EE+ ++E E E +E EEE + E
Sbjct: 816 EERLKALRIQREEMLMRPEELELINEEQKNLKQEIKLELSEIQEAEEEIQNINE 869
Score = 26.6 bits (59), Expect = 3.9
Identities = 14/53 (26%), Positives = 26/53 (49%)
Query: 3 KREEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEE 55
K + +E + EE E EE++ ++E + + E +E EEE + E +
Sbjct: 820 KALRIQREEMLMRPEELELINEEQKNLKQEIKLELSEIQEAEEEIQNINENKN 872
>gnl|CDD|235672 PRK06012, flhA, flagellar biosynthesis protein FlhA; Validated.
Length = 697
Score = 32.8 bits (76), Expect = 0.025
Identities = 12/28 (42%), Positives = 17/28 (60%)
Query: 1 MGKREEEEEKEEEEKEEEEEEEEEEEEE 28
+ KRE++ + E+ EEEE E EEE
Sbjct: 326 LRKREKKAAELAAEEAEEEEAAEPEEES 353
Score = 27.0 bits (61), Expect = 2.5
Identities = 11/25 (44%), Positives = 14/25 (56%)
Query: 20 EEEEEEEEEDEEEEEEDEEEEEEEE 44
E++ E EE EEE+ E EEE
Sbjct: 329 REKKAAELAAEEAEEEEAAEPEEES 353
>gnl|CDD|240402 PTZ00399, PTZ00399, cysteinyl-tRNA-synthetase; Provisional.
Length = 651
Score = 32.7 bits (75), Expect = 0.025
Identities = 12/41 (29%), Positives = 32/41 (78%)
Query: 8 EEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEE 48
++KEE ++E+EE+E +E++ + ++++E++++E E+ E+
Sbjct: 548 DDKEELQREKEEKEALKEQKRLRKLKKQEEKKKKELEKLEK 588
Score = 32.7 bits (75), Expect = 0.026
Identities = 14/43 (32%), Positives = 30/43 (69%), Gaps = 2/43 (4%)
Query: 3 KREEEEE--KEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEE 43
K +++EE +E+EEKE +E++ + + +EE+++ E E+ E+
Sbjct: 546 KLDDKEELQREKEEKEALKEQKRLRKLKKQEEKKKKELEKLEK 588
Score = 32.3 bits (74), Expect = 0.040
Identities = 12/41 (29%), Positives = 28/41 (68%)
Query: 10 KEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEE 50
++EE + E+EE+E +E+ + + +EE++++E E+ E+
Sbjct: 548 DDKEELQREKEEKEALKEQKRLRKLKKQEEKKKKELEKLEK 588
Score = 31.5 bits (72), Expect = 0.082
Identities = 13/41 (31%), Positives = 29/41 (70%)
Query: 13 EEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEE 53
++KEE + E+EE+E E++ +++EE++++E E+ E+
Sbjct: 548 DDKEELQREKEEKEALKEQKRLRKLKKQEEKKKKELEKLEK 588
Score = 30.4 bits (69), Expect = 0.17
Identities = 12/43 (27%), Positives = 31/43 (72%)
Query: 15 KEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEELQ 57
++EE + E+EE+E +E++ + +++EE++++E E+ E+ +
Sbjct: 548 DDKEELQREKEEKEALKEQKRLRKLKKQEEKKKKELEKLEKAK 590
Score = 30.4 bits (69), Expect = 0.19
Identities = 13/44 (29%), Positives = 30/44 (68%)
Query: 15 KEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEELQA 58
K +++EE + E+EE E +E+ + +++EE++++E E+ +A
Sbjct: 546 KLDDKEELQREKEEKEALKEQKRLRKLKKQEEKKKKELEKLEKA 589
>gnl|CDD|237622 PRK14140, PRK14140, heat shock protein GrpE; Provisional.
Length = 191
Score = 32.3 bits (74), Expect = 0.026
Identities = 24/51 (47%), Positives = 33/51 (64%)
Query: 8 EEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEELQA 58
E++ E+ EEE EE E EE ++E EEE EEE E E +EE+ + EL+A
Sbjct: 1 MEEKNEQVEEEVEETEVEEAVEDEVEEETVEEESEAELLDEEQAKIAELEA 51
Score = 31.9 bits (73), Expect = 0.044
Identities = 25/58 (43%), Positives = 36/58 (62%)
Query: 1 MGKREEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEELQA 58
M ++ E+ E+E EE E EE E+E EEE EEE E E +EE+ + E E + +EL+
Sbjct: 1 MEEKNEQVEEEVEETEVEEAVEDEVEEETVEEESEAELLDEEQAKIAELEAKLDELEE 58
Score = 31.1 bits (71), Expect = 0.088
Identities = 24/54 (44%), Positives = 32/54 (59%)
Query: 5 EEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEELQA 58
EE EE E EE E+E EEE EEE E E ++E+ + E E + +E EE L+
Sbjct: 10 EEVEETEVEEAVEDEVEEETVEEESEAELLDEEQAKIAELEAKLDELEERYLRL 63
Score = 28.4 bits (64), Expect = 0.74
Identities = 24/54 (44%), Positives = 30/54 (55%)
Query: 5 EEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEELQA 58
EE E EE ++E EEE EEE E E +EE + E E + +E EE LQA
Sbjct: 12 VEETEVEEAVEDEVEEETVEEESEAELLDEEQAKIAELEAKLDELEERYLRLQA 65
Score = 25.0 bits (55), Expect = 9.4
Identities = 23/47 (48%), Positives = 27/47 (57%)
Query: 18 EEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEELQAGGHGIA 64
EE+ E+ EEE EE E E+ E+E EEE EEE E E L IA
Sbjct: 1 MEEKNEQVEEEVEETEVEEAVEDEVEEETVEEESEAELLDEEQAKIA 47
>gnl|CDD|149343 pfam08229, SHR3_chaperone, ER membrane protein SH3. This family of
proteins are membrane localised chaperones that are
required for correct plasma membrane localisation of
amino acid permeases (AAPs). SH3 prevents AAPs proteins
from aggregating and assists in their correct folding.
In the absence of SH3, AAPs are retained in the ER.
Length = 196
Score = 32.3 bits (74), Expect = 0.030
Identities = 12/35 (34%), Positives = 18/35 (51%)
Query: 8 EEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEE 42
E K+ + EE EE E +EEE + E++E
Sbjct: 158 EWKDAKLLEEFAAEEAEAAAAAKEEESAEGEKKES 192
Score = 31.5 bits (72), Expect = 0.048
Identities = 12/35 (34%), Positives = 17/35 (48%)
Query: 5 EEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEE 39
E ++ K EE EE E +E+E E E +E
Sbjct: 158 EWKDAKLLEEFAAEEAEAAAAAKEEESAEGEKKES 192
Score = 30.8 bits (70), Expect = 0.090
Identities = 12/35 (34%), Positives = 18/35 (51%)
Query: 18 EEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEE 52
E ++ + EE EE E +EEE E E++E
Sbjct: 158 EWKDAKLLEEFAAEEAEAAAAAKEEESAEGEKKES 192
Score = 30.8 bits (70), Expect = 0.10
Identities = 12/35 (34%), Positives = 18/35 (51%)
Query: 19 EEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEE 53
E ++ + EE EE E +EEE E E++E
Sbjct: 158 EWKDAKLLEEFAAEEAEAAAAAKEEESAEGEKKES 192
Score = 30.4 bits (69), Expect = 0.14
Identities = 10/32 (31%), Positives = 15/32 (46%)
Query: 2 GKREEEEEKEEEEKEEEEEEEEEEEEEDEEEE 33
+ ++ + EE EE E +EEE E E
Sbjct: 157 AEWKDAKLLEEFAAEEAEAAAAAKEEESAEGE 188
Score = 30.4 bits (69), Expect = 0.15
Identities = 11/35 (31%), Positives = 18/35 (51%)
Query: 16 EEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEE 50
E ++ + EE +E E +EEE E E++E
Sbjct: 158 EWKDAKLLEEFAAEEAEAAAAAKEEESAEGEKKES 192
Score = 30.0 bits (68), Expect = 0.20
Identities = 11/31 (35%), Positives = 14/31 (45%)
Query: 24 EEEEEDEEEEEEDEEEEEEEEEEEEEEEEEE 54
E ++ EE EE E +EEE E E
Sbjct: 158 EWKDAKLLEEFAAEEAEAAAAAKEEESAEGE 188
Score = 29.6 bits (67), Expect = 0.27
Identities = 12/33 (36%), Positives = 17/33 (51%)
Query: 12 EEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEE 44
++ K EE EE E +EEE E E++E
Sbjct: 160 KDAKLLEEFAAEEAEAAAAAKEEESAEGEKKES 192
Score = 29.2 bits (66), Expect = 0.32
Identities = 12/35 (34%), Positives = 18/35 (51%)
Query: 17 EEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEE 51
E ++ + EE EE E +EEE E E++E
Sbjct: 158 EWKDAKLLEEFAAEEAEAAAAAKEEESAEGEKKES 192
Score = 29.2 bits (66), Expect = 0.38
Identities = 12/30 (40%), Positives = 14/30 (46%)
Query: 3 KREEEEEKEEEEKEEEEEEEEEEEEEDEEE 32
K EE EE E +EEE E E +E
Sbjct: 163 KLLEEFAAEEAEAAAAAKEEESAEGEKKES 192
Score = 28.8 bits (65), Expect = 0.50
Identities = 12/35 (34%), Positives = 17/35 (48%)
Query: 14 EKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEE 48
E ++ + EE EE E EEE E E++E
Sbjct: 158 EWKDAKLLEEFAAEEAEAAAAAKEEESAEGEKKES 192
Score = 28.8 bits (65), Expect = 0.55
Identities = 12/35 (34%), Positives = 18/35 (51%)
Query: 9 EKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEE 43
E ++ + EE EE E +EEE E E++E
Sbjct: 158 EWKDAKLLEEFAAEEAEAAAAAKEEESAEGEKKES 192
Score = 28.5 bits (64), Expect = 0.57
Identities = 11/31 (35%), Positives = 15/31 (48%)
Query: 25 EEEEDEEEEEEDEEEEEEEEEEEEEEEEEEE 55
E ++ + EE EE E +EEE E E
Sbjct: 158 EWKDAKLLEEFAAEEAEAAAAAKEEESAEGE 188
Score = 28.5 bits (64), Expect = 0.62
Identities = 9/31 (29%), Positives = 14/31 (45%)
Query: 27 EEDEEEEEEDEEEEEEEEEEEEEEEEEEELQ 57
E + + E+ EE E +EEE E +
Sbjct: 158 EWKDAKLLEEFAAEEAEAAAAAKEEESAEGE 188
Score = 28.1 bits (63), Expect = 0.79
Identities = 11/35 (31%), Positives = 18/35 (51%)
Query: 21 EEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEE 55
E ++ + +E EE E +EEE E E++E
Sbjct: 158 EWKDAKLLEEFAAEEAEAAAAAKEEESAEGEKKES 192
Score = 28.1 bits (63), Expect = 0.98
Identities = 11/35 (31%), Positives = 18/35 (51%)
Query: 13 EEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEE 47
E K+ + EE EE + ++EE E E++E
Sbjct: 158 EWKDAKLLEEFAAEEAEAAAAAKEEESAEGEKKES 192
Score = 27.7 bits (62), Expect = 1.2
Identities = 10/35 (28%), Positives = 18/35 (51%)
Query: 20 EEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEE 54
E ++ + E+ EE + +EEE E E++E
Sbjct: 158 EWKDAKLLEEFAAEEAEAAAAAKEEESAEGEKKES 192
>gnl|CDD|215153 PLN02271, PLN02271, serine hydroxymethyltransferase.
Length = 586
Score = 32.5 bits (74), Expect = 0.031
Identities = 18/71 (25%), Positives = 32/71 (45%), Gaps = 14/71 (19%)
Query: 30 EEEEEEDEEEEEEEEEEEEEEEEEEELQAGGHGIAI----------CQCKSAKIVTTKTI 79
E++EE++E+ EE +E+EEE+ E+E GH + + S+ K
Sbjct: 53 EQKEEKEEDAGEEGDEDEEEQGEDEHFSILGHPMCLKRPRDGDSSSSSSSSSS----KRA 108
Query: 80 PMQVDGEACRV 90
+ E+ R
Sbjct: 109 AVDSGLESRRA 119
Score = 30.9 bits (70), Expect = 0.12
Identities = 16/26 (61%), Positives = 21/26 (80%)
Query: 13 EEKEEEEEEEEEEEEEDEEEEEEDEE 38
E+KEE+EE+ EE +EDEEE+ EDE
Sbjct: 53 EQKEEKEEDAGEEGDEDEEEQGEDEH 78
Score = 29.8 bits (67), Expect = 0.27
Identities = 13/26 (50%), Positives = 20/26 (76%)
Query: 16 EEEEEEEEEEEEEDEEEEEEDEEEEE 41
E++EE+EE+ EE +E+EEE E+E
Sbjct: 53 EQKEEKEEDAGEEGDEDEEEQGEDEH 78
Score = 29.8 bits (67), Expect = 0.33
Identities = 13/26 (50%), Positives = 21/26 (80%)
Query: 22 EEEEEEEDEEEEEEDEEEEEEEEEEE 47
E++EE+E++ EE DE+EEE+ E+E
Sbjct: 53 EQKEEKEEDAGEEGDEDEEEQGEDEH 78
Score = 29.8 bits (67), Expect = 0.34
Identities = 12/26 (46%), Positives = 21/26 (80%)
Query: 23 EEEEEEDEEEEEEDEEEEEEEEEEEE 48
E++EE++E+ EE +E+EEE+ E+E
Sbjct: 53 EQKEEKEEDAGEEGDEDEEEQGEDEH 78
Score = 29.4 bits (66), Expect = 0.43
Identities = 14/26 (53%), Positives = 21/26 (80%)
Query: 20 EEEEEEEEEDEEEEEEDEEEEEEEEE 45
E++EE+EE+ EE +EDEEE+ E+E
Sbjct: 53 EQKEEKEEDAGEEGDEDEEEQGEDEH 78
Score = 29.4 bits (66), Expect = 0.46
Identities = 13/26 (50%), Positives = 21/26 (80%)
Query: 21 EEEEEEEEDEEEEEEDEEEEEEEEEE 46
E++EE+EED EE +++EEE+ E+E
Sbjct: 53 EQKEEKEEDAGEEGDEDEEEQGEDEH 78
Score = 28.6 bits (64), Expect = 0.74
Identities = 12/26 (46%), Positives = 21/26 (80%)
Query: 19 EEEEEEEEEEDEEEEEEDEEEEEEEE 44
E++EE+EE+ EE +E++EE+ E+E
Sbjct: 53 EQKEEKEEDAGEEGDEDEEEQGEDEH 78
Score = 28.6 bits (64), Expect = 0.79
Identities = 13/26 (50%), Positives = 21/26 (80%)
Query: 5 EEEEEKEEEEKEEEEEEEEEEEEEDE 30
E++EEKEE+ EE +E+EEE+ E++
Sbjct: 53 EQKEEKEEDAGEEGDEDEEEQGEDEH 78
Score = 28.6 bits (64), Expect = 0.85
Identities = 12/25 (48%), Positives = 20/25 (80%)
Query: 11 EEEEKEEEEEEEEEEEEEDEEEEEE 35
++EEKEE+ EE +E+EE++ E+E
Sbjct: 54 QKEEKEEDAGEEGDEDEEEQGEDEH 78
Score = 28.2 bits (63), Expect = 0.92
Identities = 13/26 (50%), Positives = 21/26 (80%)
Query: 8 EEKEEEEKEEEEEEEEEEEEEDEEEE 33
E+KEE+E++ EE +E+EEE+ E+E
Sbjct: 53 EQKEEKEEDAGEEGDEDEEEQGEDEH 78
Score = 28.2 bits (63), Expect = 1.0
Identities = 11/26 (42%), Positives = 21/26 (80%)
Query: 18 EEEEEEEEEEEDEEEEEEDEEEEEEE 43
E++EE+EE+ +E +E+E+E+ E+E
Sbjct: 53 EQKEEKEEDAGEEGDEDEEEQGEDEH 78
Score = 28.2 bits (63), Expect = 1.2
Identities = 12/26 (46%), Positives = 20/26 (76%)
Query: 24 EEEEEDEEEEEEDEEEEEEEEEEEEE 49
E++EE EE+ E+ +E+EEE+ E+E
Sbjct: 53 EQKEEKEEDAGEEGDEDEEEQGEDEH 78
Score = 27.8 bits (62), Expect = 1.3
Identities = 11/26 (42%), Positives = 21/26 (80%)
Query: 25 EEEEDEEEEEEDEEEEEEEEEEEEEE 50
E++E++EE+ +E +E+EEE+ E+E
Sbjct: 53 EQKEEKEEDAGEEGDEDEEEQGEDEH 78
Score = 27.8 bits (62), Expect = 1.5
Identities = 11/26 (42%), Positives = 21/26 (80%)
Query: 17 EEEEEEEEEEEEDEEEEEEDEEEEEE 42
E++EE+EE+ E+ +E+EE++ E+E
Sbjct: 53 EQKEEKEEDAGEEGDEDEEEQGEDEH 78
Score = 27.1 bits (60), Expect = 2.5
Identities = 12/26 (46%), Positives = 20/26 (76%)
Query: 9 EKEEEEKEEEEEEEEEEEEEDEEEEE 34
E++EE++E+ EE +E+EEE E+E
Sbjct: 53 EQKEEKEEDAGEEGDEDEEEQGEDEH 78
Score = 27.1 bits (60), Expect = 2.5
Identities = 13/26 (50%), Positives = 21/26 (80%)
Query: 6 EEEEKEEEEKEEEEEEEEEEEEEDEE 31
E++E++EE+ EE +E+EEE+ EDE
Sbjct: 53 EQKEEKEEDAGEEGDEDEEEQGEDEH 78
Score = 26.7 bits (59), Expect = 3.3
Identities = 12/26 (46%), Positives = 21/26 (80%)
Query: 26 EEEDEEEEEEDEEEEEEEEEEEEEEE 51
E+++E+EE+ EE +E+EEE+ E+E
Sbjct: 53 EQKEEKEEDAGEEGDEDEEEQGEDEH 78
Score = 26.7 bits (59), Expect = 3.8
Identities = 11/25 (44%), Positives = 21/25 (84%)
Query: 11 EEEEKEEEEEEEEEEEEEDEEEEEE 35
E++E++EE+ EE +E+E+E+ E+E
Sbjct: 53 EQKEEKEEDAGEEGDEDEEEQGEDE 77
Score = 26.3 bits (58), Expect = 4.7
Identities = 10/26 (38%), Positives = 21/26 (80%)
Query: 12 EEEKEEEEEEEEEEEEEDEEEEEEDE 37
E+++E+EE+ EE +E++EE+ E++
Sbjct: 53 EQKEEKEEDAGEEGDEDEEEQGEDEH 78
Score = 25.9 bits (57), Expect = 5.8
Identities = 12/25 (48%), Positives = 19/25 (76%)
Query: 3 KREEEEEKEEEEKEEEEEEEEEEEE 27
++EE+EE EE +E+EEE+ E+E
Sbjct: 54 QKEEKEEDAGEEGDEDEEEQGEDEH 78
Score = 25.9 bits (57), Expect = 6.8
Identities = 11/26 (42%), Positives = 21/26 (80%)
Query: 14 EKEEEEEEEEEEEEEDEEEEEEDEEE 39
E++EE+EE+ EE +++EEE+ ++E
Sbjct: 53 EQKEEKEEDAGEEGDEDEEEQGEDEH 78
>gnl|CDD|235033 PRK02363, PRK02363, DNA-directed RNA polymerase subunit delta;
Reviewed.
Length = 129
Score = 31.9 bits (73), Expect = 0.031
Identities = 14/51 (27%), Positives = 36/51 (70%)
Query: 5 EEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEE 55
E +E+ +K++++ + +++ D++ +D+ +EE+ +EE++E+EE+EE
Sbjct: 79 EIIPLEEKFDKKKKKFMDGDDDIIDDDILPDDDFDEEDLDEEDDEDEEDEE 129
Score = 29.6 bits (67), Expect = 0.18
Identities = 13/51 (25%), Positives = 35/51 (68%)
Query: 5 EEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEE 55
EE EE+ +++++ + +++ +++ D++ +EE+ +EE++E+EE+E
Sbjct: 78 EEIIPLEEKFDKKKKKFMDGDDDIIDDDILPDDDFDEEDLDEEDDEDEEDE 128
Score = 27.7 bits (62), Expect = 1.1
Identities = 12/47 (25%), Positives = 35/47 (74%)
Query: 1 MGKREEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEE 47
+ ++ ++++K+ + +++ +++ ++D +EE+ DEE++E+EE+EE
Sbjct: 83 LEEKFDKKKKKFMDGDDDIIDDDILPDDDFDEEDLDEEDDEDEEDEE 129
Score = 27.3 bits (61), Expect = 1.2
Identities = 11/46 (23%), Positives = 33/46 (71%)
Query: 3 KREEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEE 48
+ + +++K++ +++ +++ +D+ +EE+ +EE++E+EE+EE
Sbjct: 84 EEKFDKKKKKFMDGDDDIIDDDILPDDDFDEEDLDEEDDEDEEDEE 129
>gnl|CDD|234352 TIGR03779, Bac_Flav_CT_M, Bacteroides conjugative transposon TraM
protein. Members of this protein family are designated
TraM and are found in a proposed transfer region of a
class of conjugative transposon found in the Bacteroides
lineage [Cellular processes, DNA transformation].
Length = 410
Score = 32.4 bits (74), Expect = 0.032
Identities = 16/48 (33%), Positives = 21/48 (43%)
Query: 11 EEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEELQA 58
E K +EE+E E EE E + E EE+ E+ EL A
Sbjct: 137 YEYPKTDEEKELLREVEELESRLATEPSPAPELEEQLALMEKSYELAA 184
Score = 30.5 bits (69), Expect = 0.14
Identities = 12/44 (27%), Positives = 17/44 (38%)
Query: 4 REEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEE 47
E + +E++E E EE E E E EE+ E
Sbjct: 134 GSFYEYPKTDEEKELLREVEELESRLATEPSPAPELEEQLALME 177
Score = 30.1 bits (68), Expect = 0.19
Identities = 13/45 (28%), Positives = 18/45 (40%)
Query: 14 EKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEELQA 58
+E E + +E++E E EE E E E EE A
Sbjct: 130 NRELGSFYEYPKTDEEKELLREVEELESRLATEPSPAPELEEQLA 174
Score = 26.6 bits (59), Expect = 3.1
Identities = 11/38 (28%), Positives = 16/38 (42%)
Query: 3 KREEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEE 40
+ +EE++ E EE E E E EE+ E
Sbjct: 140 PKTDEEKELLREVEELESRLATEPSPAPELEEQLALME 177
Score = 26.6 bits (59), Expect = 3.2
Identities = 12/54 (22%), Positives = 29/54 (53%)
Query: 4 REEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEELQ 57
+E E+K++++K ++ + E+ D+E ++ + +EE +E E L+
Sbjct: 64 QEALEQKQKDKKRTLQDLADSFEKSDKESQDYSSSDSGFDEEPDEPAETAGSLR 117
Score = 25.8 bits (57), Expect = 5.8
Identities = 11/36 (30%), Positives = 14/36 (38%)
Query: 2 GKREEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDE 37
E+E +E EE E E E EE+ E
Sbjct: 142 TDEEKELLREVEELESRLATEPSPAPELEEQLALME 177
>gnl|CDD|233870 TIGR02442, Cob-chelat-sub, cobaltochelatase subunit.
Cobaltochelatase is responsible for the insertion of
cobalt into the corrin ring of coenzyme B12 during its
biosynthesis. Two versions have been well described.
CbiK/CbiX is a monomeric, anaerobic version which acts
early in the biosynthesis (pfam06180). CobNST is a
trimeric, ATP-dependent, aerobic version which acts late
in the biosynthesis (TIGR02257/TIGR01650/TIGR01651). A
number of genomes (actinobacteria, cyanobacteria,
betaproteobacteria and pseudomonads) which apparently
biosynthesize B12, encode a cobN gene but are
demonstrably lacking cobS and cobT. These genomes do,
however contain a homolog (modelled here) of the
magnesium chelatase subunits BchI/BchD family. Aside
from the cyanobacteria (which have a separate magnesium
chelatase trimer), these species do not make chlorins,
so do not have any use for a magnesium chelatase.
Furthermore, in nearly all cases the members of this
family are proximal to either CobN itself or other genes
involved in cobalt transport or B12 biosynthesis.
Length = 633
Score = 32.4 bits (74), Expect = 0.032
Identities = 16/63 (25%), Positives = 35/63 (55%), Gaps = 3/63 (4%)
Query: 5 EEEEEKEEEEKEEEEEE---EEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEELQAGGH 61
E+ + K+E++ EE+ EE + E+ +E E++ E+ ++E+E + + +A G
Sbjct: 315 EQPQGKDEKDLEEKPEEPGPDPEKPDEGEDDAEQSGPRGHPTPGNDDEKEPDPQEEADGQ 374
Query: 62 GIA 64
G +
Sbjct: 375 GSS 377
>gnl|CDD|215079 PLN00151, PLN00151, potassium transporter; Provisional.
Length = 852
Score = 32.4 bits (74), Expect = 0.034
Identities = 7/34 (20%), Positives = 17/34 (50%)
Query: 17 EEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEE 50
E++ E+ +D++++ + EEEE+
Sbjct: 33 SEDDSEDPASLDDDDDDRDSGGGMLEEEEDGNMR 66
Score = 32.4 bits (74), Expect = 0.039
Identities = 10/66 (15%), Positives = 20/66 (30%), Gaps = 16/66 (24%)
Query: 5 EEEEEKEEEEKEEEEE----------------EEEEEEEEDEEEEEEDEEEEEEEEEEEE 48
EEE E++ E+ ++++D+ + EEE
Sbjct: 1 MEEESSGGIGSSSNGSGGLVGTDSGESRWVDGSEDDSEDPASLDDDDDDRDSGGGMLEEE 60
Query: 49 EEEEEE 54
E+
Sbjct: 61 EDGNMR 66
Score = 32.0 bits (73), Expect = 0.051
Identities = 10/62 (16%), Positives = 20/62 (32%), Gaps = 17/62 (27%)
Query: 11 EEEEKEEEEEEEEE-----------------EEEEDEEEEEEDEEEEEEEEEEEEEEEEE 53
EEE E++ E+ D+++++ + EEEE
Sbjct: 2 EEESSGGIGSSSNGSGGLVGTDSGESRWVDGSEDDSEDPASLDDDDDDRDSGGGMLEEEE 61
Query: 54 EE 55
+
Sbjct: 62 DG 63
Score = 30.9 bits (70), Expect = 0.12
Identities = 8/48 (16%), Positives = 22/48 (45%)
Query: 1 MGKREEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEE 48
+ + E + + E++ E+ +++D++ + EEEE+
Sbjct: 19 LVGTDSGESRWVDGSEDDSEDPASLDDDDDDRDSGGGMLEEEEDGNMR 66
>gnl|CDD|224530 COG1614, CdhC, CO dehydrogenase/acetyl-CoA synthase beta subunit
[Energy production and conversion].
Length = 470
Score = 32.5 bits (74), Expect = 0.034
Identities = 34/76 (44%), Positives = 37/76 (48%), Gaps = 1/76 (1%)
Query: 4 REEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEELQAGGHGI 63
RE +EK E EEEEEEEEE+EEE E E EE E E GG GI
Sbjct: 387 REFLKEKGHPVVERWAEEEEEEEEEEEEEAAEAEAPMEEPVPGFEVPEMPMPAAGGGGGI 446
Query: 64 AICQCKSAKIVTTKTI 79
I K+AKI K I
Sbjct: 447 KIV-LKNAKITAEKVI 461
>gnl|CDD|222508 pfam14033, DUF4246, Protein of unknown function (DUF4246). This
family of proteins is functionally uncharacterized. This
family of proteins is found in bacteria and fungi.
Proteins in this family are typically between 392 and
644 amino acids in length.
Length = 496
Score = 32.2 bits (74), Expect = 0.035
Identities = 16/42 (38%), Positives = 22/42 (52%)
Query: 11 EEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEE 52
E KE+E EE + E EDE+ E+ E EE + EE +
Sbjct: 262 EYHPKEKEPEEPKPEPGEDEDYEDYWERLEEYLDWREERRKA 303
Score = 31.8 bits (73), Expect = 0.060
Identities = 15/38 (39%), Positives = 21/38 (55%)
Query: 18 EEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEE 55
E +E+E EE + E EDE+ E+ E EE + EE
Sbjct: 262 EYHPKEKEPEEPKPEPGEDEDYEDYWERLEEYLDWREE 299
Score = 30.7 bits (70), Expect = 0.13
Identities = 15/42 (35%), Positives = 22/42 (52%)
Query: 13 EEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEE 54
E +E+E EE + E E+E+ ED E EE + EE +
Sbjct: 262 EYHPKEKEPEEPKPEPGEDEDYEDYWERLEEYLDWREERRKA 303
Score = 29.5 bits (67), Expect = 0.30
Identities = 16/42 (38%), Positives = 22/42 (52%)
Query: 9 EKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEE 50
E +EKE EE + E E+ED E+ E EE + EE +
Sbjct: 262 EYHPKEKEPEEPKPEPGEDEDYEDYWERLEEYLDWREERRKA 303
Score = 29.5 bits (67), Expect = 0.31
Identities = 13/44 (29%), Positives = 23/44 (52%)
Query: 14 EKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEELQ 57
E +E+E EE + E E+E+ ++ E EE + EE + +
Sbjct: 262 EYHPKEKEPEEPKPEPGEDEDYEDYWERLEEYLDWREERRKAIH 305
Score = 28.8 bits (65), Expect = 0.57
Identities = 13/42 (30%), Positives = 22/42 (52%)
Query: 12 EEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEE 53
E +E+E EE + E ++E+ E+ E EE + EE +
Sbjct: 262 EYHPKEKEPEEPKPEPGEDEDYEDYWERLEEYLDWREERRKA 303
Score = 28.4 bits (64), Expect = 0.86
Identities = 15/45 (33%), Positives = 22/45 (48%)
Query: 1 MGKREEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEE 45
G +EKE EE + E E+E+ E+ E EE + EE +
Sbjct: 259 YGVEYHPKEKEPEEPKPEPGEDEDYEDYWERLEEYLDWREERRKA 303
Score = 28.0 bits (63), Expect = 1.1
Identities = 13/42 (30%), Positives = 22/42 (52%)
Query: 8 EEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEE 49
E +E++ EE + E E+E+ E+ E EE + EE +
Sbjct: 262 EYHPKEKEPEEPKPEPGEDEDYEDYWERLEEYLDWREERRKA 303
>gnl|CDD|162338 TIGR01398, FlhA, flagellar biosynthesis protein FlhA. This model
describes flagellar biosynthesis protein FlhA, one of a
large number of genes associated with the biosynthesis
of functional bacterial flagella. Homologs of many such
proteins, including FlhA, function in type III protein
secretion systems. A separate model describes InvA
(Salmonella enterica), LcrD (Yersinia enterocolitica),
HrcV (Xanthomonas), etc., all of which score below the
noise cutoff for this model [Cellular processes,
Chemotaxis and motility].
Length = 678
Score = 32.2 bits (74), Expect = 0.035
Identities = 13/28 (46%), Positives = 16/28 (57%)
Query: 2 GKREEEEEKEEEEKEEEEEEEEEEEEED 29
K+EEE E + +EE EEEEE D
Sbjct: 313 SKQEEEAAAEAAKAQEEAAEEEEESIND 340
Score = 31.8 bits (73), Expect = 0.063
Identities = 15/38 (39%), Positives = 21/38 (55%)
Query: 3 KREEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEE 40
++EEE E K +EE EEEEE ++ +D E E
Sbjct: 313 SKQEEEAAAEAAKAQEEAAEEEEESINDILALDDLELE 350
Score = 31.5 bits (72), Expect = 0.079
Identities = 10/30 (33%), Positives = 17/30 (56%)
Query: 10 KEEEEKEEEEEEEEEEEEEDEEEEEEDEEE 39
+ +++EE E + +EE EEEEE +
Sbjct: 311 RRSKQEEEAAAEAAKAQEEAAEEEEESIND 340
Score = 31.1 bits (71), Expect = 0.10
Identities = 11/30 (36%), Positives = 18/30 (60%)
Query: 3 KREEEEEKEEEEKEEEEEEEEEEEEEDEEE 32
+R ++EE+ E + +EE EEEEE +
Sbjct: 311 RRSKQEEEAAAEAAKAQEEAAEEEEESIND 340
Score = 30.7 bits (70), Expect = 0.13
Identities = 12/29 (41%), Positives = 16/29 (55%)
Query: 8 EEKEEEEKEEEEEEEEEEEEEDEEEEEED 36
K+EEE E + +EE E+EEE D
Sbjct: 312 RSKQEEEAAAEAAKAQEEAAEEEEESIND 340
Score = 30.7 bits (70), Expect = 0.14
Identities = 12/41 (29%), Positives = 22/41 (53%)
Query: 19 EEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEELQAG 59
++EEE + + +E+ EEEEE + ++ EL+ G
Sbjct: 312 RSKQEEEAAAEAAKAQEEAAEEEEESINDILALDDLELELG 352
Score = 30.3 bits (69), Expect = 0.17
Identities = 10/32 (31%), Positives = 17/32 (53%)
Query: 3 KREEEEEKEEEEKEEEEEEEEEEEEEDEEEEE 34
R +++EE E + +EE EEE+E +
Sbjct: 309 LRRRSKQEEEAAAEAAKAQEEAAEEEEESIND 340
Score = 30.3 bits (69), Expect = 0.18
Identities = 14/40 (35%), Positives = 21/40 (52%)
Query: 17 EEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEEL 56
++EEE E + +EE EEEEE + ++ E EL
Sbjct: 312 RSKQEEEAAAEAAKAQEEAAEEEEESINDILALDDLELEL 351
Score = 29.5 bits (67), Expect = 0.38
Identities = 10/29 (34%), Positives = 16/29 (55%)
Query: 7 EEEKEEEEKEEEEEEEEEEEEEDEEEEEE 35
++EEE E + +EE EE+EE +
Sbjct: 312 RSKQEEEAAAEAAKAQEEAAEEEEESIND 340
Score = 28.4 bits (64), Expect = 0.81
Identities = 10/29 (34%), Positives = 17/29 (58%)
Query: 15 KEEEEEEEEEEEEEDEEEEEEDEEEEEEE 43
+ ++EEE E + +EE E+EEE +
Sbjct: 312 RSKQEEEAAAEAAKAQEEAAEEEEESIND 340
Score = 28.4 bits (64), Expect = 1.0
Identities = 9/29 (31%), Positives = 16/29 (55%)
Query: 12 EEEKEEEEEEEEEEEEEDEEEEEEDEEEE 40
++EEE E + +E+ EEEE+ +
Sbjct: 312 RSKQEEEAAAEAAKAQEEAAEEEEESIND 340
Score = 27.6 bits (62), Expect = 1.4
Identities = 14/39 (35%), Positives = 21/39 (53%)
Query: 3 KREEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEE 41
+ ++EEE E + +EE EEEEE + D+ E E
Sbjct: 312 RSKQEEEAAAEAAKAQEEAAEEEEESINDILALDDLELE 350
Score = 27.6 bits (62), Expect = 1.7
Identities = 10/30 (33%), Positives = 16/30 (53%)
Query: 15 KEEEEEEEEEEEEEDEEEEEEDEEEEEEEE 44
+ ++EEE E +EE +EEEE +
Sbjct: 311 RRSKQEEEAAAEAAKAQEEAAEEEEESIND 340
Score = 26.5 bits (59), Expect = 4.7
Identities = 10/29 (34%), Positives = 15/29 (51%)
Query: 14 EKEEEEEEEEEEEEEDEEEEEEDEEEEEE 42
++EEE E + EE EE+EE +
Sbjct: 312 RSKQEEEAAAEAAKAQEEAAEEEEESIND 340
>gnl|CDD|216269 pfam01056, Myc_N, Myc amino-terminal region. The myc family
belongs to the basic helix-loop-helix leucine zipper
class of transcription factors, see pfam00010. Myc forms
a heterodimer with Max, and this complex regulates cell
growth through direct activation of genes involved in
cell replication. Mutations in the C-terminal 20
residues of this domain cause unique changes in the
induction of apoptosis, transformation, and G2 arrest.
Length = 329
Score = 32.2 bits (73), Expect = 0.039
Identities = 15/21 (71%), Positives = 17/21 (80%)
Query: 27 EEDEEEEEEDEEEEEEEEEEE 47
D E EE++EEEEEEEEEEE
Sbjct: 223 GSDSESEEDEEEEEEEEEEEE 243
Score = 32.2 bits (73), Expect = 0.041
Identities = 16/21 (76%), Positives = 17/21 (80%)
Query: 34 EEDEEEEEEEEEEEEEEEEEE 54
D E EE+EEEEEEEEEEEE
Sbjct: 223 GSDSESEEDEEEEEEEEEEEE 243
Score = 31.1 bits (70), Expect = 0.087
Identities = 15/21 (71%), Positives = 17/21 (80%)
Query: 31 EEEEEDEEEEEEEEEEEEEEE 51
+ E EE+EEEEEEEEEEEE
Sbjct: 223 GSDSESEEDEEEEEEEEEEEE 243
Score = 31.1 bits (70), Expect = 0.11
Identities = 13/21 (61%), Positives = 17/21 (80%)
Query: 20 EEEEEEEEEDEEEEEEDEEEE 40
+ E EE++EEEEEE+EEEE
Sbjct: 223 GSDSESEEDEEEEEEEEEEEE 243
Score = 31.1 bits (70), Expect = 0.11
Identities = 16/21 (76%), Positives = 17/21 (80%)
Query: 28 EDEEEEEEDEEEEEEEEEEEE 48
+ E EEDEEEEEEEEEEEE
Sbjct: 223 GSDSESEEDEEEEEEEEEEEE 243
Score = 30.7 bits (69), Expect = 0.12
Identities = 14/21 (66%), Positives = 17/21 (80%)
Query: 30 EEEEEEDEEEEEEEEEEEEEE 50
+ E +E+EEEEEEEEEEEE
Sbjct: 223 GSDSESEEDEEEEEEEEEEEE 243
Score = 30.7 bits (69), Expect = 0.12
Identities = 14/21 (66%), Positives = 17/21 (80%)
Query: 24 EEEEEDEEEEEEDEEEEEEEE 44
+ E EE+EEE+EEEEEEEE
Sbjct: 223 GSDSESEEDEEEEEEEEEEEE 243
Score = 30.7 bits (69), Expect = 0.12
Identities = 15/22 (68%), Positives = 18/22 (81%)
Query: 35 EDEEEEEEEEEEEEEEEEEEEL 56
+ E EE+EEEEEEEEEEEE+
Sbjct: 223 GSDSESEEDEEEEEEEEEEEEI 244
Score = 30.7 bits (69), Expect = 0.13
Identities = 15/21 (71%), Positives = 17/21 (80%)
Query: 33 EEEDEEEEEEEEEEEEEEEEE 53
+ E EE+EEEEEEEEEEEE
Sbjct: 223 GSDSESEEDEEEEEEEEEEEE 243
Score = 30.7 bits (69), Expect = 0.14
Identities = 14/21 (66%), Positives = 17/21 (80%)
Query: 26 EEEDEEEEEEDEEEEEEEEEE 46
+ E EE+E+EEEEEEEEEE
Sbjct: 223 GSDSESEEDEEEEEEEEEEEE 243
Score = 30.3 bits (68), Expect = 0.16
Identities = 16/23 (69%), Positives = 17/23 (73%)
Query: 7 EEEKEEEEKEEEEEEEEEEEEED 29
+ E EE EEEEEEEEEEEE D
Sbjct: 223 GSDSESEEDEEEEEEEEEEEEID 245
Score = 30.3 bits (68), Expect = 0.17
Identities = 14/21 (66%), Positives = 17/21 (80%)
Query: 12 EEEKEEEEEEEEEEEEEDEEE 32
+ E EE+EEEEEEEE+EEE
Sbjct: 223 GSDSESEEDEEEEEEEEEEEE 243
Score = 30.3 bits (68), Expect = 0.19
Identities = 13/21 (61%), Positives = 17/21 (80%)
Query: 19 EEEEEEEEEEDEEEEEEDEEE 39
+ E EE+E+EEEEEE+EEE
Sbjct: 223 GSDSESEEDEEEEEEEEEEEE 243
Score = 29.9 bits (67), Expect = 0.27
Identities = 13/21 (61%), Positives = 17/21 (80%)
Query: 18 EEEEEEEEEEEDEEEEEEDEE 38
+ E EE+EE+EEEEEE+EE
Sbjct: 223 GSDSESEEDEEEEEEEEEEEE 243
Score = 29.9 bits (67), Expect = 0.28
Identities = 14/21 (66%), Positives = 16/21 (76%)
Query: 13 EEKEEEEEEEEEEEEEDEEEE 33
E EE+EEEEEEE+EEEE
Sbjct: 223 GSDSESEEDEEEEEEEEEEEE 243
Score = 29.5 bits (66), Expect = 0.34
Identities = 15/21 (71%), Positives = 17/21 (80%)
Query: 21 EEEEEEEEDEEEEEEDEEEEE 41
+ E EEDEEEEEE+EEEEE
Sbjct: 223 GSDSESEEDEEEEEEEEEEEE 243
Score = 29.5 bits (66), Expect = 0.34
Identities = 14/20 (70%), Positives = 17/20 (85%)
Query: 16 EEEEEEEEEEEEEDEEEEEE 35
+ E EE+EEEEE+EEEEEE
Sbjct: 224 SDSESEEDEEEEEEEEEEEE 243
Score = 29.1 bits (65), Expect = 0.44
Identities = 13/21 (61%), Positives = 17/21 (80%)
Query: 25 EEEEDEEEEEEDEEEEEEEEE 45
+ + EE+EE+EEEEEEEEE
Sbjct: 223 GSDSESEEDEEEEEEEEEEEE 243
Score = 29.1 bits (65), Expect = 0.46
Identities = 14/21 (66%), Positives = 17/21 (80%)
Query: 32 EEEEDEEEEEEEEEEEEEEEE 52
+ + EE+EEEEEEEEEEEE
Sbjct: 223 GSDSESEEDEEEEEEEEEEEE 243
Score = 29.1 bits (65), Expect = 0.47
Identities = 13/21 (61%), Positives = 17/21 (80%)
Query: 23 EEEEEEDEEEEEEDEEEEEEE 43
+ E +E+EEEE+EEEEEEE
Sbjct: 223 GSDSESEEDEEEEEEEEEEEE 243
Score = 29.1 bits (65), Expect = 0.52
Identities = 14/22 (63%), Positives = 17/22 (77%)
Query: 4 REEEEEKEEEEKEEEEEEEEEE 25
+ E EE+E+EEEEEEEEEE
Sbjct: 222 SGSDSESEEDEEEEEEEEEEEE 243
Score = 28.7 bits (64), Expect = 0.54
Identities = 15/21 (71%), Positives = 18/21 (85%)
Query: 16 EEEEEEEEEEEEEDEEEEEED 36
+ E EE+EEEEEE+EEEEE D
Sbjct: 225 DSESEEDEEEEEEEEEEEEID 245
Score = 28.4 bits (63), Expect = 0.73
Identities = 13/21 (61%), Positives = 17/21 (80%)
Query: 17 EEEEEEEEEEEEDEEEEEEDE 37
+ E EE+EEE+EEEEEE+E
Sbjct: 223 GSDSESEEDEEEEEEEEEEEE 243
Score = 28.4 bits (63), Expect = 0.79
Identities = 13/21 (61%), Positives = 17/21 (80%)
Query: 22 EEEEEEEDEEEEEEDEEEEEE 42
+ E E++EEEEE+EEEEEE
Sbjct: 223 GSDSESEEDEEEEEEEEEEEE 243
Score = 28.0 bits (62), Expect = 1.0
Identities = 14/20 (70%), Positives = 17/20 (85%)
Query: 11 EEEEKEEEEEEEEEEEEEDE 30
+ E EE+EEEEEEEEEE+E
Sbjct: 224 SDSESEEDEEEEEEEEEEEE 243
Score = 28.0 bits (62), Expect = 1.1
Identities = 13/21 (61%), Positives = 17/21 (80%)
Query: 11 EEEEKEEEEEEEEEEEEEDEE 31
+ + EE+EEEEEEEEE+EE
Sbjct: 223 GSDSESEEDEEEEEEEEEEEE 243
Score = 27.6 bits (61), Expect = 1.6
Identities = 13/21 (61%), Positives = 17/21 (80%)
Query: 6 EEEEKEEEEKEEEEEEEEEEE 26
+ + EE++EEEEEEEEEEE
Sbjct: 223 GSDSESEEDEEEEEEEEEEEE 243
Score = 27.2 bits (60), Expect = 2.1
Identities = 13/21 (61%), Positives = 17/21 (80%)
Query: 16 EEEEEEEEEEEEEDEEEEEED 36
+ E EE+EEEE+EEEEEE+
Sbjct: 223 GSDSESEEDEEEEEEEEEEEE 243
Score = 26.4 bits (58), Expect = 3.6
Identities = 15/21 (71%), Positives = 16/21 (76%)
Query: 2 GKREEEEEKEEEEKEEEEEEE 22
G E EE EEEE+EEEEEEE
Sbjct: 223 GSDSESEEDEEEEEEEEEEEE 243
>gnl|CDD|219069 pfam06512, Na_trans_assoc, Sodium ion transport-associated.
Members of this family contain a region found
exclusively in eukaryotic sodium channels or their
subunits, many of which are voltage-gated. Members very
often also contain between one and four copies of
pfam00520 and, less often, one copy of pfam00612.
Length = 230
Score = 32.0 bits (73), Expect = 0.042
Identities = 20/52 (38%), Positives = 27/52 (51%)
Query: 5 EEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEEL 56
E +EE K+ E + EE++ E + E EEEEEE EEEEE+
Sbjct: 125 ESSYGFKEESKKGSAETLKLEEKDSSSSEGSTVDLEPPEEEEEEIAEEEEEV 176
Score = 31.6 bits (72), Expect = 0.052
Identities = 20/53 (37%), Positives = 26/53 (49%)
Query: 5 EEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEELQ 57
KEE +K E + EE++ E + E EEEEEE EEEEE +
Sbjct: 126 SSYGFKEESKKGSAETLKLEEKDSSSSEGSTVDLEPPEEEEEEIAEEEEEVKE 178
Score = 27.3 bits (61), Expect = 1.9
Identities = 16/56 (28%), Positives = 26/56 (46%), Gaps = 3/56 (5%)
Query: 5 EEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEE---EEEEEEEEEEEEEEELQ 57
+E+ E +EE ++ E + EE++ E + E EEEEEE E +
Sbjct: 118 NDEDTSSESSYGFKEESKKGSAETLKLEEKDSSSSEGSTVDLEPPEEEEEEIAEEE 173
Score = 25.8 bits (57), Expect = 6.1
Identities = 21/53 (39%), Positives = 29/53 (54%), Gaps = 6/53 (11%)
Query: 2 GKREEEEEKEEEEKEEEEEEEEEEE------EEDEEEEEEDEEEEEEEEEEEE 48
G +EE ++ E + EE++ E E EEEEEE EEEEE +E E+
Sbjct: 129 GFKEESKKGSAETLKLEEKDSSSSEGSTVDLEPPEEEEEEIAEEEEEVKEPED 181
Score = 25.8 bits (57), Expect = 6.5
Identities = 16/40 (40%), Positives = 21/40 (52%)
Query: 1 MGKREEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEE 40
+ E++ E + E EEEEEE EEEEE E E+
Sbjct: 142 LKLEEKDSSSSEGSTVDLEPPEEEEEEIAEEEEEVKEPED 181
>gnl|CDD|235449 PRK05415, PRK05415, hypothetical protein; Provisional.
Length = 341
Score = 32.2 bits (74), Expect = 0.043
Identities = 18/46 (39%), Positives = 26/46 (56%)
Query: 13 EEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEELQA 58
+E+ EEEEE E + +E+E +EEEEEE E E ++A
Sbjct: 12 DEEPLEEEEEPELRAQQAFDEQEAFAPAAPDEEEEEEGELEAAVEA 57
Score = 31.0 bits (71), Expect = 0.092
Identities = 19/47 (40%), Positives = 25/47 (53%)
Query: 12 EEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEELQA 58
+EE EEEEE E ++ +E+E +EEEEEE E E A
Sbjct: 12 DEEPLEEEEEPELRAQQAFDEQEAFAPAAPDEEEEEEGELEAAVEAA 58
Score = 29.8 bits (68), Expect = 0.28
Identities = 19/46 (41%), Positives = 25/46 (54%)
Query: 6 EEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEE 51
+EE EEEE+ E ++ +E+E DEEEEEE E E E
Sbjct: 12 DEEPLEEEEEPELRAQQAFDEQEAFAPAAPDEEEEEEGELEAAVEA 57
Score = 29.5 bits (67), Expect = 0.32
Identities = 17/50 (34%), Positives = 27/50 (54%)
Query: 3 KREEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEE 52
+ + +EE EEE+E E ++ +E++ +EEEEEE E E E
Sbjct: 8 RIDFDEEPLEEEEEPELRAQQAFDEQEAFAPAAPDEEEEEEGELEAAVEA 57
Score = 29.5 bits (67), Expect = 0.34
Identities = 19/45 (42%), Positives = 25/45 (55%)
Query: 11 EEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEE 55
+EE EEEEE E ++ +E+E +EEEEEE E E E
Sbjct: 12 DEEPLEEEEEPELRAQQAFDEQEAFAPAAPDEEEEEEGELEAAVE 56
Score = 29.1 bits (66), Expect = 0.43
Identities = 19/45 (42%), Positives = 24/45 (53%)
Query: 11 EEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEE 55
EE +EEEE E ++ DE+E +EEEEEE E E E
Sbjct: 13 EEPLEEEEEPELRAQQAFDEQEAFAPAAPDEEEEEEGELEAAVEA 57
Score = 27.5 bits (62), Expect = 1.4
Identities = 15/42 (35%), Positives = 22/42 (52%)
Query: 18 EEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEELQAG 59
+EE EEEEE + ++ +E+E +EEEEEE
Sbjct: 12 DEEPLEEEEEPELRAQQAFDEQEAFAPAAPDEEEEEEGELEA 53
>gnl|CDD|220135 pfam09184, PPP4R2, PPP4R2. PPP4R2 (protein phosphatase 4 core
regulatory subunit R2) is the regulatory subunit of the
histone H2A phosphatase complex. It has been shown to
confer resistance to the anticancer drug cisplatin in
yeast, and may confer resistance in higher eukaryotes.
Length = 285
Score = 32.1 bits (73), Expect = 0.043
Identities = 19/42 (45%), Positives = 35/42 (83%)
Query: 8 EEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEE 49
+K ++E++++++ + EE+E +E+EEE+E EEEEEEE+E+E
Sbjct: 244 NKKSDDEEDDDQDGDYVEEKELKEDEEEEETEEEEEEEDEDE 285
Score = 32.1 bits (73), Expect = 0.047
Identities = 20/42 (47%), Positives = 35/42 (83%)
Query: 13 EEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEE 54
+K ++EE+++++ + EE+E +++EEEEE EEEEEEE+E+E
Sbjct: 244 NKKSDDEEDDDQDGDYVEEKELKEDEEEEETEEEEEEEDEDE 285
Score = 31.3 bits (71), Expect = 0.066
Identities = 19/42 (45%), Positives = 33/42 (78%)
Query: 10 KEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEE 51
++ + EE+++++ + EE E +E+E+EEE EEEEEEE+E+E
Sbjct: 244 NKKSDDEEDDDQDGDYVEEKELKEDEEEEETEEEEEEEDEDE 285
Score = 31.3 bits (71), Expect = 0.073
Identities = 19/40 (47%), Positives = 32/40 (80%)
Query: 3 KREEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEE 42
K ++EE+ +++ EE+E +E+EEE+E EEEE+EE+E+E
Sbjct: 246 KSDDEEDDDQDGDYVEEKELKEDEEEEETEEEEEEEDEDE 285
Score = 31.3 bits (71), Expect = 0.079
Identities = 20/41 (48%), Positives = 34/41 (82%)
Query: 15 KEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEE 55
++ ++EE+++++ D EE+E +E+EEEEE EEEEEEE+E+
Sbjct: 244 NKKSDDEEDDDQDGDYVEEKELKEDEEEEETEEEEEEEDED 284
Score = 30.9 bits (70), Expect = 0.092
Identities = 19/43 (44%), Positives = 35/43 (81%)
Query: 10 KEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEE 52
K ++ +EE+++++ + E++E +E++EEEE EEEEEEE+E+E
Sbjct: 243 KNKKSDDEEDDDQDGDYVEEKELKEDEEEEETEEEEEEEDEDE 285
Score = 30.9 bits (70), Expect = 0.096
Identities = 20/42 (47%), Positives = 35/42 (83%)
Query: 12 EEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEE 53
++ ++EE+++++ + +E+E +EDEEEEE EEEEEEE+E+E
Sbjct: 244 NKKSDDEEDDDQDGDYVEEKELKEDEEEEETEEEEEEEDEDE 285
Score = 30.9 bits (70), Expect = 0.11
Identities = 19/42 (45%), Positives = 33/42 (78%)
Query: 6 EEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEE 47
++ +EE+ +++ + EE+E +++EEEEE EEEEEEE+E+E
Sbjct: 244 NKKSDDEEDDDQDGDYVEEKELKEDEEEEETEEEEEEEDEDE 285
Score = 30.9 bits (70), Expect = 0.11
Identities = 20/51 (39%), Positives = 39/51 (76%)
Query: 5 EEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEE 55
+++ K + K ++ ++EE+++++ + EE++ +E+EEEEE EEEEEEE+E
Sbjct: 233 QDDGPKGSDVKNKKSDDEEDDDQDGDYVEEKELKEDEEEEETEEEEEEEDE 283
Score = 30.6 bits (69), Expect = 0.12
Identities = 21/42 (50%), Positives = 34/42 (80%)
Query: 14 EKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEE 55
K+ ++EE+++++ + EE+E E+EEEEE EEEEEEE+E+E
Sbjct: 244 NKKSDDEEDDDQDGDYVEEKELKEDEEEEETEEEEEEEDEDE 285
Score = 30.2 bits (68), Expect = 0.19
Identities = 20/43 (46%), Positives = 34/43 (79%)
Query: 4 REEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEE 46
+ ++ + EE++ ++ + EE+E +EDEEEEE +EEEEEE+E+E
Sbjct: 243 KNKKSDDEEDDDQDGDYVEEKELKEDEEEEETEEEEEEEDEDE 285
Score = 30.2 bits (68), Expect = 0.20
Identities = 19/42 (45%), Positives = 33/42 (78%)
Query: 7 EEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEE 48
++ ++EE ++++ + EE+E E+EEEE+ EEEEEEE+E+E
Sbjct: 244 NKKSDDEEDDDQDGDYVEEKELKEDEEEEETEEEEEEEDEDE 285
Score = 29.8 bits (67), Expect = 0.24
Identities = 19/41 (46%), Positives = 34/41 (82%)
Query: 3 KREEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEE 43
K+ ++EE ++++ + EE+E +E+EE+EE EEE+EEE+E+E
Sbjct: 245 KKSDDEEDDDQDGDYVEEKELKEDEEEEETEEEEEEEDEDE 285
Score = 29.0 bits (65), Expect = 0.54
Identities = 18/43 (41%), Positives = 36/43 (83%)
Query: 3 KREEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEE 45
K ++ +++E+++++ + EE+E +E++EEEE E+EEEEE+E+E
Sbjct: 243 KNKKSDDEEDDDQDGDYVEEKELKEDEEEEETEEEEEEEDEDE 285
Score = 28.3 bits (63), Expect = 0.89
Identities = 17/48 (35%), Positives = 34/48 (70%)
Query: 8 EEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEE 55
+ + + + + ++ ++EE+D+++ + EE+E +E+EEEEE EEEEE
Sbjct: 232 SQDDGPKGSDVKNKKSDDEEDDDQDGDYVEEKELKEDEEEEETEEEEE 279
Score = 26.3 bits (58), Expect = 3.7
Identities = 17/34 (50%), Positives = 26/34 (76%)
Query: 2 GKREEEEEKEEEEKEEEEEEEEEEEEEDEEEEEE 35
++ + EE+E +E+EEEEE EEEE+EE+E+E
Sbjct: 252 DDDQDGDYVEEKELKEDEEEEETEEEEEEEDEDE 285
>gnl|CDD|221275 pfam11861, DUF3381, Domain of unknown function (DUF3381). This
domain is functionally uncharacterized. This domain is
found in eukaryotes. This presumed domain is typically
between 156 to 174 amino acids in length. This domain is
found associated with pfam07780, pfam01728.
Length = 154
Score = 31.5 bits (72), Expect = 0.043
Identities = 22/52 (42%), Positives = 33/52 (63%)
Query: 6 EEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEELQ 57
+ +++EKEEEEEEE E EE DEEE+ ++ E+E + + E+ E E Q
Sbjct: 92 KLLGLDKKEKEEEEEEEVEVEELDEEEQIDELLEKELAKLKREKRRENERKQ 143
Score = 30.7 bits (70), Expect = 0.095
Identities = 20/58 (34%), Positives = 38/58 (65%)
Query: 1 MGKREEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEELQA 58
+G ++E+E+EEEE+ E EE +EEE+ ++ E+E + + E+ E E +++E + Q
Sbjct: 94 LGLDKKEKEEEEEEEVEVEELDEEEQIDELLEKELAKLKREKRRENERKQKEILKEQM 151
Score = 29.9 bits (68), Expect = 0.15
Identities = 19/53 (35%), Positives = 35/53 (66%)
Query: 3 KREEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEE 55
++ +K+E+E+EEEEE E EE +E+E+ +E E+E + + E+ E E ++
Sbjct: 91 RKLLGLDKKEKEEEEEEEVEVEELDEEEQIDELLEKELAKLKREKRRENERKQ 143
Score = 28.8 bits (65), Expect = 0.40
Identities = 21/56 (37%), Positives = 39/56 (69%)
Query: 2 GKREEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEELQ 57
K+E+EEE+EEE + EE +EEE+ +E E+E + + E+ E E +++E +E+++
Sbjct: 97 DKKEKEEEEEEEVEVEELDEEEQIDELLEKELAKLKREKRRENERKQKEILKEQMK 152
Score = 24.9 bits (55), Expect = 8.8
Identities = 17/42 (40%), Positives = 29/42 (69%)
Query: 17 EEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEELQA 58
+ +++E+EE+EEEE E EE +EEE+ +E E+E +L+
Sbjct: 92 KLLGLDKKEKEEEEEEEVEVEELDEEEQIDELLEKELAKLKR 133
>gnl|CDD|218752 pfam05793, TFIIF_alpha, Transcription initiation factor IIF, alpha
subunit (TFIIF-alpha). Transcription initiation factor
IIF, alpha subunit (TFIIF-alpha) or RNA polymerase
II-associating protein 74 (RAP74) is the large subunit
of transcription factor IIF (TFIIF), which is essential
for accurate initiation and stimulates elongation by RNA
polymerase II.
Length = 528
Score = 32.2 bits (73), Expect = 0.045
Identities = 15/52 (28%), Positives = 29/52 (55%)
Query: 5 EEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEEL 56
+ EE+E++ E + E E++E+ +E EEE+ EEE ++ ++L
Sbjct: 290 SSASGNDPEEREDKLSPEIPAKPEIEQDEDSEESEEEKNEEEGGLSKKGKKL 341
Score = 31.5 bits (71), Expect = 0.079
Identities = 17/58 (29%), Positives = 34/58 (58%)
Query: 6 EEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEELQAGGHGI 63
+ +E E+K E + E E+DE+ EE +EE+ EEE ++ ++ ++L+ +G+
Sbjct: 294 GNDPEEREDKLSPEIPAKPEIEQDEDSEESEEEKNEEEGGLSKKGKKLKKLKGKKNGL 351
Score = 29.9 bits (67), Expect = 0.24
Identities = 15/53 (28%), Positives = 27/53 (50%)
Query: 6 EEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEELQA 58
+ + +E E++ E + E E++ED EE EEE+ EEE ++ +
Sbjct: 289 DSSASGNDPEEREDKLSPEIPAKPEIEQDEDSEESEEEKNEEEGGLSKKGKKL 341
Score = 29.5 bits (66), Expect = 0.40
Identities = 18/53 (33%), Positives = 29/53 (54%)
Query: 4 REEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEEL 56
REE+ + + EE E++ + + E E++E+ EE EEE+ EEE L
Sbjct: 282 REEDYISDSSASGNDPEEREDKLSPEIPAKPEIEQDEDSEESEEEKNEEEGGL 334
Score = 29.2 bits (65), Expect = 0.51
Identities = 13/50 (26%), Positives = 26/50 (52%)
Query: 5 EEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEE 54
+ + E+ E++ E + + E++E+ EE EEE+ EEE ++
Sbjct: 289 DSSASGNDPEEREDKLSPEIPAKPEIEQDEDSEESEEEKNEEEGGLSKKG 338
Score = 28.8 bits (64), Expect = 0.57
Identities = 18/54 (33%), Positives = 26/54 (48%)
Query: 2 GKREEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEE 55
G E EE + + EE E++ E E E++E+ EE EEE+ EE
Sbjct: 277 GDDEGREEDYISDSSASGNDPEEREDKLSPEIPAKPEIEQDEDSEESEEEKNEE 330
Score = 28.8 bits (64), Expect = 0.72
Identities = 17/51 (33%), Positives = 27/51 (52%)
Query: 5 EEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEE 55
EE+ + + EE E++ E + E E++E+ EE EEE+ EEE
Sbjct: 281 GREEDYISDSSASGNDPEEREDKLSPEIPAKPEIEQDEDSEESEEEKNEEE 331
Score = 28.4 bits (63), Expect = 0.80
Identities = 14/41 (34%), Positives = 25/41 (60%)
Query: 4 REEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEE 44
RE++ E K E E++E+ EE E+E+ EEE ++ ++
Sbjct: 300 REDKLSPEIPAKPEIEQDEDSEESEEEKNEEEGGLSKKGKK 340
Score = 27.6 bits (61), Expect = 1.5
Identities = 17/58 (29%), Positives = 30/58 (51%)
Query: 3 KREEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEELQAGG 60
++E +E+ + + EE ED+ E + E E++E+ EE EEE+ + GG
Sbjct: 276 DGDDEGREEDYISDSSASGNDPEEREDKLSPEIPAKPEIEQDEDSEESEEEKNEEEGG 333
Score = 27.2 bits (60), Expect = 2.2
Identities = 14/47 (29%), Positives = 27/47 (57%)
Query: 2 GKREEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEE 48
G EE E + + + E E++E+ +E EEE++EEE ++ ++
Sbjct: 294 GNDPEEREDKLSPEIPAKPEIEQDEDSEESEEEKNEEEGGLSKKGKK 340
Score = 26.1 bits (57), Expect = 5.7
Identities = 12/51 (23%), Positives = 26/51 (50%)
Query: 5 EEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEE 55
++ +++ EE + + E+ E++ E + E E++E+ EE EE
Sbjct: 275 DDGDDEGREEDYISDSSASGNDPEEREDKLSPEIPAKPEIEQDEDSEESEE 325
Score = 26.1 bits (57), Expect = 6.3
Identities = 12/52 (23%), Positives = 29/52 (55%)
Query: 3 KREEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEE 54
E K E E++E+ EE EEE+ E+E + ++ ++ + ++ ++++
Sbjct: 304 LSPEIPAKPEIEQDEDSEESEEEKNEEEGGLSKKGKKLKKLKGKKNGLDKDD 355
>gnl|CDD|218312 pfam04889, Cwf_Cwc_15, Cwf15/Cwc15 cell cycle control protein.
This family represents Cwf15/Cwc15 (from
Schizosaccharomyces pombe and Saccharomyces cerevisiae
respectively) and their homologues. The function of
these proteins is unknown, but they form part of the
spliceosome and are thus thought to be involved in mRNA
splicing.
Length = 241
Score = 32.0 bits (73), Expect = 0.047
Identities = 11/57 (19%), Positives = 32/57 (56%)
Query: 2 GKREEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEELQA 58
+ +E++++E+E K + EE+ + D+ + D + +++ ++++ E+E L
Sbjct: 93 NEGDEDDDEEDEIKRKRIEEDARNSDADDSDSSSDSDSSDDDSDDDDSEDETAALLR 149
Score = 28.9 bits (65), Expect = 0.44
Identities = 15/53 (28%), Positives = 30/53 (56%)
Query: 6 EEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEELQA 58
+ + + + ++++ E+E E E+ ++E EE+E EEEE+ EE +A
Sbjct: 124 SSSDSDSSDDDSDDDDSEDETAALLRELEKIKKERAEEKEREEEEKAAEEEKA 176
Score = 28.9 bits (65), Expect = 0.52
Identities = 18/55 (32%), Positives = 34/55 (61%)
Query: 5 EEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEELQAG 59
+++ ++++ E+E E E+ ++E E++E EEEE+ EEE+ EEE+ G
Sbjct: 130 SSDDDSDDDDSEDETAALLRELEKIKKERAEEKEREEEEKAAEEEKAREEEILTG 184
>gnl|CDD|185594 PTZ00395, PTZ00395, Sec24-related protein; Provisional.
Length = 1560
Score = 32.4 bits (73), Expect = 0.047
Identities = 14/44 (31%), Positives = 22/44 (50%)
Query: 3 KREEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEE 46
KRE+ E ++ E+ +EE E E E+E E ++ EE
Sbjct: 548 KREDHPEGGTNRQKYEQSDEESVESSSSENSSENENEVTDKGEE 591
Score = 28.1 bits (62), Expect = 1.0
Identities = 12/45 (26%), Positives = 20/45 (44%)
Query: 9 EKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEE 53
K E+ E ++ E+ ++E E E E E E ++ EE
Sbjct: 547 AKREDHPEGGTNRQKYEQSDEESVESSSSENSSENENEVTDKGEE 591
Score = 28.1 bits (62), Expect = 1.4
Identities = 12/45 (26%), Positives = 20/45 (44%)
Query: 6 EEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEE 50
+ E E ++ E+ +EE E E+ E E E ++ EE
Sbjct: 547 AKREDHPEGGTNRQKYEQSDEESVESSSSENSSENENEVTDKGEE 591
Score = 27.7 bits (61), Expect = 1.6
Identities = 12/46 (26%), Positives = 20/46 (43%)
Query: 11 EEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEEL 56
+ E E ++ E+ +EE E E E E E ++ EE+
Sbjct: 547 AKREDHPEGGTNRQKYEQSDEESVESSSSENSSENENEVTDKGEEI 592
Score = 27.7 bits (61), Expect = 1.8
Identities = 15/63 (23%), Positives = 25/63 (39%)
Query: 18 EEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEELQAGGHGIAICQCKSAKIVTTK 77
+ E+ E + ++ E+ +EE E E E E E+ G I K+ +
Sbjct: 547 AKREDHPEGGTNRQKYEQSDEESVESSSSENSSENENEVTDKGEEIYSLLKKTINRIDMN 606
Query: 78 TIP 80
IP
Sbjct: 607 KIP 609
Score = 27.3 bits (60), Expect = 2.1
Identities = 13/47 (27%), Positives = 21/47 (44%)
Query: 2 GKREEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEE 48
G + E+ E ++ E+ +EE E E E E E ++ EE
Sbjct: 545 GIAKREDHPEGGTNRQKYEQSDEESVESSSSENSSENENEVTDKGEE 591
Score = 26.6 bits (58), Expect = 3.6
Identities = 11/45 (24%), Positives = 20/45 (44%)
Query: 5 EEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEE 49
+ E+ E ++ E+ +EE + E E E E ++ EE
Sbjct: 547 AKREDHPEGGTNRQKYEQSDEESVESSSSENSSENENEVTDKGEE 591
Score = 26.2 bits (57), Expect = 5.6
Identities = 10/45 (22%), Positives = 21/45 (46%)
Query: 8 EEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEE 52
++E+ + ++ E+ +E+ E E E E E ++ EE
Sbjct: 547 AKREDHPEGGTNRQKYEQSDEESVESSSSENSSENENEVTDKGEE 591
Score = 25.8 bits (56), Expect = 8.5
Identities = 10/45 (22%), Positives = 20/45 (44%)
Query: 7 EEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEE 51
+ ++ E ++ E+ +EE E + E E E ++ EE
Sbjct: 547 AKREDHPEGGTNRQKYEQSDEESVESSSSENSSENENEVTDKGEE 591
>gnl|CDD|223626 COG0552, FtsY, Signal recognition particle GTPase [Intracellular
trafficking and secretion].
Length = 340
Score = 31.8 bits (73), Expect = 0.049
Identities = 20/36 (55%), Positives = 23/36 (63%)
Query: 5 EEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEE 40
EK EEE EE E E+E+ EEEDEEEE+E E
Sbjct: 1 MGFFEKLEEELEELEAEKEKIEEEDEEEEKEGWFER 36
Score = 30.7 bits (70), Expect = 0.12
Identities = 19/36 (52%), Positives = 22/36 (61%)
Query: 12 EEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEE 47
E+ EEE EE E E E+ EEEDEEEE+E E
Sbjct: 1 MGFFEKLEEELEELEAEKEKIEEEDEEEEKEGWFER 36
Score = 30.7 bits (70), Expect = 0.14
Identities = 18/40 (45%), Positives = 26/40 (65%)
Query: 20 EEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEELQAG 59
E+ EE+ EE E ++E+ EEE+EEEE+E E L+ G
Sbjct: 1 MGFFEKLEEELEELEAEKEKIEEEDEEEEKEGWFERLKQG 40
Score = 30.3 bits (69), Expect = 0.16
Identities = 17/36 (47%), Positives = 23/36 (63%)
Query: 14 EKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEE 49
E+ EEE EE E E+E+ E+E+EEEE+E E
Sbjct: 1 MGFFEKLEEELEELEAEKEKIEEEDEEEEKEGWFER 36
Score = 30.3 bits (69), Expect = 0.20
Identities = 18/36 (50%), Positives = 22/36 (61%)
Query: 19 EEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEE 54
E+ EEE EE E E E+ EEE+EEEE+E E
Sbjct: 1 MGFFEKLEEELEELEAEKEKIEEEDEEEEKEGWFER 36
Score = 29.9 bits (68), Expect = 0.24
Identities = 16/36 (44%), Positives = 23/36 (63%)
Query: 18 EEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEE 53
E+ EEE +E E E+++ EEE+EEEE+E E
Sbjct: 1 MGFFEKLEEELEELEAEKEKIEEEDEEEEKEGWFER 36
Score = 29.5 bits (67), Expect = 0.35
Identities = 18/36 (50%), Positives = 23/36 (63%)
Query: 16 EEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEE 51
E+ EEE EE E E+E+ EEE+EEEE+E E
Sbjct: 1 MGFFEKLEEELEELEAEKEKIEEEDEEEEKEGWFER 36
Score = 28.8 bits (65), Expect = 0.65
Identities = 17/36 (47%), Positives = 22/36 (61%)
Query: 17 EEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEE 52
E+ EEE E+ E E+E EEE+EEEE+E E
Sbjct: 1 MGFFEKLEEELEELEAEKEKIEEEDEEEEKEGWFER 36
Score = 28.4 bits (64), Expect = 0.79
Identities = 15/36 (41%), Positives = 23/36 (63%)
Query: 11 EEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEE 46
++ EEE EE E E+++ EEE++EEE+E E
Sbjct: 1 MGFFEKLEEELEELEAEKEKIEEEDEEEEKEGWFER 36
Score = 28.0 bits (63), Expect = 0.99
Identities = 17/36 (47%), Positives = 23/36 (63%)
Query: 9 EKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEE 44
E+ EEE EE E E+E+ EEE+EE+E+E E
Sbjct: 1 MGFFEKLEEELEELEAEKEKIEEEDEEEEKEGWFER 36
Score = 28.0 bits (63), Expect = 1.1
Identities = 17/35 (48%), Positives = 25/35 (71%)
Query: 1 MGKREEEEEKEEEEKEEEEEEEEEEEEEDEEEEEE 35
MG E+ EE+ EE + E+E+ EEE+EEE++E E
Sbjct: 1 MGFFEKLEEELEELEAEKEKIEEEDEEEEKEGWFE 35
Score = 27.6 bits (62), Expect = 1.7
Identities = 18/31 (58%), Positives = 22/31 (70%)
Query: 3 KREEEEEKEEEEKEEEEEEEEEEEEEDEEEE 33
K EEE E+ E EKE+ EEE+EEEE+E E
Sbjct: 6 KLEEELEELEAEKEKIEEEDEEEEKEGWFER 36
Score = 26.8 bits (60), Expect = 2.5
Identities = 16/36 (44%), Positives = 22/36 (61%)
Query: 7 EEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEE 42
E+ E+E EE E E+E+ E+E+EEEE E E
Sbjct: 1 MGFFEKLEEELEELEAEKEKIEEEDEEEEKEGWFER 36
Score = 25.7 bits (57), Expect = 7.9
Identities = 14/32 (43%), Positives = 23/32 (71%)
Query: 3 KREEEEEKEEEEKEEEEEEEEEEEEEDEEEEE 34
++ EEE +E E ++E+ EEE+EEEE++ E
Sbjct: 5 EKLEEELEELEAEKEKIEEEDEEEEKEGWFER 36
Score = 25.3 bits (56), Expect = 8.9
Identities = 17/32 (53%), Positives = 21/32 (65%)
Query: 4 REEEEEKEEEEKEEEEEEEEEEEEEDEEEEEE 35
+ EEE EE E E+E+ EEE+EEEE E E
Sbjct: 5 EKLEEELEELEAEKEKIEEEDEEEEKEGWFER 36
>gnl|CDD|219838 pfam08432, DUF1742, Fungal protein of unknown function (DUF1742).
This is a family of fungal proteins of unknown function.
Length = 182
Score = 31.6 bits (72), Expect = 0.055
Identities = 11/56 (19%), Positives = 44/56 (78%)
Query: 1 MGKREEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEEL 56
+ + E+ +KE EEK++ + ++++ +++ ++++++ +++++++ E+++E+E E++L
Sbjct: 67 LAEEIEKVKKEYEEKQKWKWKKKKSKKKKDKDKDKKDDKKDDKSEKKDEKEAEDKL 122
Score = 31.2 bits (71), Expect = 0.083
Identities = 10/67 (14%), Positives = 44/67 (65%)
Query: 3 KREEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEELQAGGHG 62
K EE++K + +K++ ++++++++++ ++++++ E+++E+E E++ E+ +
Sbjct: 76 KEYEEKQKWKWKKKKSKKKKDKDKDKKDDKKDDKSEKKDEKEAEDKLEDLTKSYSETLST 135
Query: 63 IAICQCK 69
++ + +
Sbjct: 136 LSELKPR 142
Score = 30.8 bits (70), Expect = 0.10
Identities = 11/50 (22%), Positives = 42/50 (84%)
Query: 3 KREEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEE 52
K+E EE+++ + K+++ +++++++++ ++++++D+ E+++E+E E++ E+
Sbjct: 75 KKEYEEKQKWKWKKKKSKKKKDKDKDKKDDKKDDKSEKKDEKEAEDKLED 124
Score = 30.4 bits (69), Expect = 0.13
Identities = 11/50 (22%), Positives = 43/50 (86%)
Query: 4 REEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEE 53
++E EEK++ + ++++ ++++++++D++++++D++ E+++E+E E++ E+
Sbjct: 75 KKEYEEKQKWKWKKKKSKKKKDKDKDKKDDKKDDKSEKKDEKEAEDKLED 124
Score = 29.7 bits (67), Expect = 0.22
Identities = 9/52 (17%), Positives = 42/52 (80%)
Query: 3 KREEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEE 54
K ++E E++++ K ++++ +++++++ ++++++ +++ E+++E+E E++ E+
Sbjct: 73 KVKKEYEEKQKWKWKKKKSKKKKDKDKDKKDDKKDDKSEKKDEKEAEDKLED 124
Score = 29.7 bits (67), Expect = 0.22
Identities = 11/53 (20%), Positives = 42/53 (79%)
Query: 3 KREEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEE 55
K+E EE E+ +KE EE+++ + +++ +++++ ++++++++++++ E+++E+
Sbjct: 64 KKELAEEIEKVKKEYEEKQKWKWKKKKSKKKKDKDKDKKDDKKDDKSEKKDEK 116
Score = 29.7 bits (67), Expect = 0.26
Identities = 9/56 (16%), Positives = 40/56 (71%)
Query: 1 MGKREEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEEL 56
++++ + K+++ K+++++++++++++ +++ E+ +E+E E++ E+ + E L
Sbjct: 78 YEEKQKWKWKKKKSKKKKDKDKDKKDDKKDDKSEKKDEKEAEDKLEDLTKSYSETL 133
Score = 27.0 bits (60), Expect = 2.4
Identities = 10/53 (18%), Positives = 42/53 (79%)
Query: 3 KREEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEE 55
K++++E EE EK ++E EE+++ + +++ ++ +++++++++++++++ E++
Sbjct: 61 KKKKKELAEEIEKVKKEYEEKQKWKWKKKKSKKKKDKDKDKKDDKKDDKSEKK 113
Score = 27.0 bits (60), Expect = 2.4
Identities = 9/51 (17%), Positives = 33/51 (64%)
Query: 1 MGKREEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEE 51
K++++++K++++ +++++ E+++E+E E++ E+ + E E +
Sbjct: 90 KSKKKKDKDKDKKDDKKDDKSEKKDEKEAEDKLEDLTKSYSETLSTLSELK 140
Score = 26.2 bits (58), Expect = 3.8
Identities = 5/52 (9%), Positives = 36/52 (69%)
Query: 2 GKREEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEE 53
+ ++++ ++++ +++++++++++++ E+++E++ E++ E+ + E
Sbjct: 83 KWKWKKKKSKKKKDKDKDKKDDKKDDKSEKKDEKEAEDKLEDLTKSYSETLS 134
>gnl|CDD|218010 pfam04293, SpoVR, SpoVR like protein. Bacillus subtilis stage V
sporulation protein R is involved in spore cortex
formation. Little is known about cortex biosynthesis,
except that it depends on several sigma E controlled
genes, including spoVR.
Length = 427
Score = 31.8 bits (73), Expect = 0.057
Identities = 14/54 (25%), Positives = 26/54 (48%)
Query: 3 KREEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEEL 56
K EEEK +E+ EE + + + + ++ EEE + EE +E++
Sbjct: 174 KLSLEEEKARQEEREEYLQSQVNDLWRTIPPQREKLEEERARRKRFPEEPQEDI 227
Score = 26.0 bits (58), Expect = 5.1
Identities = 11/43 (25%), Positives = 20/43 (46%)
Query: 15 KEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEELQ 57
K EEE+ +EE +E + + + + E+ EEE +
Sbjct: 174 KLSLEEEKARQEEREEYLQSQVNDLWRTIPPQREKLEEERARR 216
>gnl|CDD|240271 PTZ00108, PTZ00108, DNA topoisomerase 2-like protein; Provisional.
Length = 1388
Score = 31.9 bits (73), Expect = 0.057
Identities = 9/29 (31%), Positives = 22/29 (75%)
Query: 15 KEEEEEEEEEEEEEDEEEEEEDEEEEEEE 43
K + E++++ E D+ E+E+DE++E+++
Sbjct: 1360 KSDSSSEDDDDSEVDDSEDEDDEDDEDDD 1388
Score = 30.8 bits (70), Expect = 0.12
Identities = 7/31 (22%), Positives = 24/31 (77%)
Query: 10 KEEEEKEEEEEEEEEEEEEDEEEEEEDEEEE 40
K++ + E++++ E ++ ++E++E+DE+++
Sbjct: 1358 KKKSDSSSEDDDDSEVDDSEDEDDEDDEDDD 1388
Score = 30.8 bits (70), Expect = 0.13
Identities = 7/32 (21%), Positives = 24/32 (75%)
Query: 10 KEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEE 41
++++ E++++ E ++ E+E++ED+E+++
Sbjct: 1357 RKKKSDSSSEDDDDSEVDDSEDEDDEDDEDDD 1388
Score = 30.8 bits (70), Expect = 0.13
Identities = 8/30 (26%), Positives = 23/30 (76%)
Query: 15 KEEEEEEEEEEEEEDEEEEEEDEEEEEEEE 44
K+ + E++++ E ++ E+ED+E++E+++
Sbjct: 1359 KKSDSSSEDDDDSEVDDSEDEDDEDDEDDD 1388
Score = 30.8 bits (70), Expect = 0.14
Identities = 8/29 (27%), Positives = 22/29 (75%)
Query: 22 EEEEEEEDEEEEEEDEEEEEEEEEEEEEE 50
+ + ED+++ E D+ E+E++E++E+++
Sbjct: 1360 KSDSSSEDDDDSEVDDSEDEDDEDDEDDD 1388
Score = 30.8 bits (70), Expect = 0.15
Identities = 8/29 (27%), Positives = 22/29 (75%)
Query: 27 EEDEEEEEEDEEEEEEEEEEEEEEEEEEE 55
+ D E++D+ E ++ E+E++E++E+++
Sbjct: 1360 KSDSSSEDDDDSEVDDSEDEDDEDDEDDD 1388
Score = 30.8 bits (70), Expect = 0.15
Identities = 7/32 (21%), Positives = 24/32 (75%)
Query: 3 KREEEEEKEEEEKEEEEEEEEEEEEEDEEEEE 34
++++ + E++ + E ++ E+E++ED+E+++
Sbjct: 1357 RKKKSDSSSEDDDDSEVDDSEDEDDEDDEDDD 1388
Score = 30.4 bits (69), Expect = 0.19
Identities = 8/29 (27%), Positives = 22/29 (75%)
Query: 21 EEEEEEEEDEEEEEEDEEEEEEEEEEEEE 49
+ + E+D++ E +D E+E++E++E+++
Sbjct: 1360 KSDSSSEDDDDSEVDDSEDEDDEDDEDDD 1388
Score = 30.0 bits (68), Expect = 0.23
Identities = 7/32 (21%), Positives = 25/32 (78%)
Query: 15 KEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEE 46
++++ + E++++ E ++ EDE++E++E+++
Sbjct: 1357 RKKKSDSSSEDDDDSEVDDSEDEDDEDDEDDD 1388
Score = 30.0 bits (68), Expect = 0.29
Identities = 7/29 (24%), Positives = 22/29 (75%)
Query: 20 EEEEEEEEEDEEEEEEDEEEEEEEEEEEE 48
+ + E++D+ E ++ E+E++E++E+++
Sbjct: 1360 KSDSSSEDDDDSEVDDSEDEDDEDDEDDD 1388
Score = 29.6 bits (67), Expect = 0.31
Identities = 7/29 (24%), Positives = 21/29 (72%)
Query: 28 EDEEEEEEDEEEEEEEEEEEEEEEEEEEL 56
+ + E+D++ E ++ E+E++E++E++
Sbjct: 1360 KSDSSSEDDDDSEVDDSEDEDDEDDEDDD 1388
Score = 29.6 bits (67), Expect = 0.38
Identities = 6/29 (20%), Positives = 22/29 (75%)
Query: 25 EEEEDEEEEEEDEEEEEEEEEEEEEEEEE 53
+ + E++++ E ++ E+E++E++E+++
Sbjct: 1360 KSDSSSEDDDDSEVDDSEDEDDEDDEDDD 1388
Score = 29.2 bits (66), Expect = 0.43
Identities = 7/29 (24%), Positives = 22/29 (75%)
Query: 26 EEEDEEEEEEDEEEEEEEEEEEEEEEEEE 54
+ + E+++D E ++ E+E++E++E+++
Sbjct: 1360 KSDSSSEDDDDSEVDDSEDEDDEDDEDDD 1388
Score = 29.2 bits (66), Expect = 0.46
Identities = 6/29 (20%), Positives = 22/29 (75%)
Query: 19 EEEEEEEEEEDEEEEEEDEEEEEEEEEEE 47
+ + E+++D E ++ ++E++E++E+++
Sbjct: 1360 KSDSSSEDDDDSEVDDSEDEDDEDDEDDD 1388
Score = 29.2 bits (66), Expect = 0.46
Identities = 8/34 (23%), Positives = 23/34 (67%)
Query: 3 KREEEEEKEEEEKEEEEEEEEEEEEEDEEEEEED 36
+ +++ E +++ E ++ E+E+DE++E++D
Sbjct: 1355 RPRKKKSDSSSEDDDDSEVDDSEDEDDEDDEDDD 1388
Score = 29.2 bits (66), Expect = 0.49
Identities = 5/29 (17%), Positives = 22/29 (75%)
Query: 23 EEEEEEDEEEEEEDEEEEEEEEEEEEEEE 51
+ + +++++ E ++ E+E++E++E+++
Sbjct: 1360 KSDSSSEDDDDSEVDDSEDEDDEDDEDDD 1388
Score = 29.2 bits (66), Expect = 0.49
Identities = 6/29 (20%), Positives = 22/29 (75%)
Query: 14 EKEEEEEEEEEEEEEDEEEEEEDEEEEEE 42
+ + E++++ E +D E+E+++++E+++
Sbjct: 1360 KSDSSSEDDDDSEVDDSEDEDDEDDEDDD 1388
Score = 28.9 bits (65), Expect = 0.61
Identities = 7/29 (24%), Positives = 22/29 (75%)
Query: 9 EKEEEEKEEEEEEEEEEEEEDEEEEEEDE 37
+ + +++++ E ++ E+ED+E++E+D+
Sbjct: 1360 KSDSSSEDDDDSEVDDSEDEDDEDDEDDD 1388
Score = 27.3 bits (61), Expect = 2.4
Identities = 5/29 (17%), Positives = 22/29 (75%)
Query: 24 EEEEEDEEEEEEDEEEEEEEEEEEEEEEE 52
+ + E++++ + ++ E+E++E++E+++
Sbjct: 1360 KSDSSSEDDDDSEVDDSEDEDDEDDEDDD 1388
>gnl|CDD|129022 smart00786, SHR3_chaperone, ER membrane protein SH3. This family
of proteins are membrane localised chaperones that are
required for correct plasma membrane localisation of
amino acid permeases (AAPs). Shr3 prevents AAPs proteins
from aggregating and assists in their correct folding.
In the absence of Shr3, AAPs are retained in the ER.
Length = 196
Score = 31.6 bits (72), Expect = 0.058
Identities = 8/35 (22%), Positives = 15/35 (42%)
Query: 5 EEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEE 39
E ++ K++EE EE +E + + E
Sbjct: 158 ERKDAKQKEEFAAEERKEALAAAAKKSATPQKVET 192
Score = 30.4 bits (69), Expect = 0.14
Identities = 9/35 (25%), Positives = 17/35 (48%)
Query: 8 EEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEE 42
E K+ ++KEE EE +E ++ ++ E
Sbjct: 158 ERKDAKQKEEFAAEERKEALAAAAKKSATPQKVET 192
Score = 29.3 bits (66), Expect = 0.39
Identities = 7/36 (19%), Positives = 18/36 (50%)
Query: 2 GKREEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDE 37
+R++ ++KEE EE +E ++ ++ +
Sbjct: 157 AERKDAKQKEEFAAEERKEALAAAAKKSATPQKVET 192
Score = 28.9 bits (65), Expect = 0.42
Identities = 7/35 (20%), Positives = 18/35 (51%)
Query: 14 EKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEE 48
E+++ +++EE EE +E ++ ++ E
Sbjct: 158 ERKDAKQKEEFAAEERKEALAAAAKKSATPQKVET 192
Score = 28.9 bits (65), Expect = 0.50
Identities = 6/35 (17%), Positives = 17/35 (48%)
Query: 16 EEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEE 50
E ++ +++EE +E +E ++ ++ E
Sbjct: 158 ERKDAKQKEEFAAEERKEALAAAAKKSATPQKVET 192
Score = 28.5 bits (64), Expect = 0.61
Identities = 7/35 (20%), Positives = 18/35 (51%)
Query: 9 EKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEE 43
E+++ +++EE EE +E ++ ++ E
Sbjct: 158 ERKDAKQKEEFAAEERKEALAAAAKKSATPQKVET 192
Score = 28.5 bits (64), Expect = 0.62
Identities = 6/32 (18%), Positives = 15/32 (46%)
Query: 24 EEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEE 55
E ++ ++EE EE +E ++ ++
Sbjct: 158 ERKDAKQKEEFAAEERKEALAAAAKKSATPQK 189
Score = 28.1 bits (63), Expect = 0.99
Identities = 7/35 (20%), Positives = 17/35 (48%)
Query: 18 EEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEE 52
E ++ +++EE EE +E ++ ++ E
Sbjct: 158 ERKDAKQKEEFAAEERKEALAAAAKKSATPQKVET 192
Score = 27.7 bits (62), Expect = 1.0
Identities = 7/35 (20%), Positives = 17/35 (48%)
Query: 17 EEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEE 51
E ++ +++EE EE +E ++ ++ E
Sbjct: 158 ERKDAKQKEEFAAEERKEALAAAAKKSATPQKVET 192
Score = 27.7 bits (62), Expect = 1.1
Identities = 5/32 (15%), Positives = 15/32 (46%)
Query: 23 EEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEE 54
E ++ + +EE +E +E ++ ++
Sbjct: 158 ERKDAKQKEEFAAEERKEALAAAAKKSATPQK 189
Score = 27.7 bits (62), Expect = 1.1
Identities = 7/33 (21%), Positives = 16/33 (48%)
Query: 12 EEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEE 44
++ K++EE EE +E ++ ++ E
Sbjct: 160 KDAKQKEEFAAEERKEALAAAAKKSATPQKVET 192
Score = 27.3 bits (61), Expect = 1.6
Identities = 6/31 (19%), Positives = 14/31 (45%)
Query: 27 EEDEEEEEEDEEEEEEEEEEEEEEEEEEELQ 57
E + +++E+ EE +E ++ Q
Sbjct: 158 ERKDAKQKEEFAAEERKEALAAAAKKSATPQ 188
Score = 27.0 bits (60), Expect = 2.1
Identities = 6/34 (17%), Positives = 15/34 (44%)
Query: 25 EEEEDEEEEEEDEEEEEEEEEEEEEEEEEEELQA 58
E ++ +++EE EE +E ++ +
Sbjct: 158 ERKDAKQKEEFAAEERKEALAAAAKKSATPQKVE 191
Score = 27.0 bits (60), Expect = 2.2
Identities = 6/35 (17%), Positives = 17/35 (48%)
Query: 21 EEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEE 55
E ++ ++++E EE +E ++ ++ E
Sbjct: 158 ERKDAKQKEEFAAEERKEALAAAAKKSATPQKVET 192
>gnl|CDD|234767 PRK00448, polC, DNA polymerase III PolC; Validated.
Length = 1437
Score = 31.7 bits (73), Expect = 0.061
Identities = 19/77 (24%), Positives = 41/77 (53%), Gaps = 1/77 (1%)
Query: 6 EEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEELQAGGHGIAI 65
+ + + ++ KEE E+ E ++EEEDE+ +E E ++ E E++++ + + + G I
Sbjct: 160 KIDFEIDDSKEELEKFEAQKEEEDEKLAKEALEAMKKLEAEKKKQSKNFDPKEGPVQIGK 219
Query: 66 CQCKSAKIVTTKTIPMQ 82
+ +I K I +
Sbjct: 220 -KIDKEEITPMKEINEE 235
Score = 27.9 bits (63), Expect = 1.2
Identities = 14/46 (30%), Positives = 29/46 (63%)
Query: 5 EEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEE 50
+EE EK E +KEEE+E+ +E E ++ E +++++ + + +E
Sbjct: 169 KEELEKFEAQKEEEDEKLAKEALEAMKKLEAEKKKQSKNFDPKEGP 214
>gnl|CDD|129416 TIGR00316, cdhC, CO dehydrogenase/CO-methylating acetyl-CoA
synthase complex, beta subunit. Nomenclature follows
the description for Methanosarcina thermophila. The
CO-methylating acetyl-CoA synthase is considered the
defining enzyme of the Wood-Ljungdahl pathway, used for
acetate catabolism by sulfate reducing bacteria but for
acetate biosynthesis by acetogenic bacteria such as
oorella thermoacetica (f. Clostridium thermoaceticum)
[Energy metabolism, Chemoautotrophy].
Length = 458
Score = 31.7 bits (72), Expect = 0.062
Identities = 26/70 (37%), Positives = 32/70 (45%), Gaps = 1/70 (1%)
Query: 10 KEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEELQAGGHGIAICQCK 69
KE+ + E +EEE EEEEE + EE E E E + A GI I K
Sbjct: 389 KEKGHPVVKRVVREVDEEEIEEEEEAMQPEEMEMEGFEVPALQMPAASAAPAGIKIV-LK 447
Query: 70 SAKIVTTKTI 79
+AKI K I
Sbjct: 448 NAKITIEKVI 457
>gnl|CDD|234750 PRK00409, PRK00409, recombination and DNA strand exchange inhibitor
protein; Reviewed.
Length = 782
Score = 31.7 bits (73), Expect = 0.062
Identities = 23/49 (46%), Positives = 34/49 (69%)
Query: 6 EEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEE 54
EE E+E E+K EE E +E E+ +EE EE +E+ +EEE++ EE E+E
Sbjct: 526 EELERELEQKAEEAEALLKEAEKLKEELEEKKEKLQEEEDKLLEEAEKE 574
Score = 29.4 bits (67), Expect = 0.38
Identities = 19/56 (33%), Positives = 38/56 (67%)
Query: 3 KREEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEELQA 58
+RE E++ EE E +E E+ +EE E+++E+ ++EE++ EE E+E ++ +E +
Sbjct: 529 ERELEQKAEEAEALLKEAEKLKEELEEKKEKLQEEEDKLLEEAEKEAQQAIKEAKK 584
Score = 28.3 bits (64), Expect = 1.1
Identities = 18/52 (34%), Positives = 35/52 (67%)
Query: 4 REEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEE 55
E E +E EK +EE EE++E+ ++EE++ +E E+E ++ +E ++E +E
Sbjct: 537 EEAEALLKEAEKLKEELEEKKEKLQEEEDKLLEEAEKEAQQAIKEAKKEADE 588
Score = 27.1 bits (61), Expect = 2.4
Identities = 21/59 (35%), Positives = 40/59 (67%)
Query: 3 KREEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEELQAGGH 61
+E E+ KEE E+++E+ +EEE++ +E E+E + +E ++E +E +E +LQ GG+
Sbjct: 543 LKEAEKLKEELEEKKEKLQEEEDKLLEEAEKEAQQAIKEAKKEADEIIKELRQLQKGGY 601
Score = 25.6 bits (57), Expect = 9.1
Identities = 19/56 (33%), Positives = 34/56 (60%), Gaps = 3/56 (5%)
Query: 3 KREEEEEKEEEEKEEEEE---EEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEE 55
+ E++ +E E +E E EE EE++E +EEE+ EE E+E ++ +E ++E
Sbjct: 530 RELEQKAEEAEALLKEAEKLKEELEEKKEKLQEEEDKLLEEAEKEAQQAIKEAKKE 585
>gnl|CDD|178945 PRK00247, PRK00247, putative inner membrane protein translocase
component YidC; Validated.
Length = 429
Score = 31.7 bits (72), Expect = 0.063
Identities = 14/85 (16%), Positives = 29/85 (34%)
Query: 3 KREEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEELQAGGHG 62
K+ EK E + ++E ++ E E E +E + + G
Sbjct: 333 KKTRTAEKNEAKARKKEIAQKRRAAEREINREARQERAAAMARARARRAAVKAKKKGLID 392
Query: 63 IAICQCKSAKIVTTKTIPMQVDGEA 87
+ + ++ +K P QV+
Sbjct: 393 ASPNEDTPSENEESKGSPPQVEATT 417
>gnl|CDD|222792 PHA00435, PHA00435, capsid assembly protein.
Length = 306
Score = 31.7 bits (72), Expect = 0.064
Identities = 23/52 (44%), Positives = 30/52 (57%)
Query: 5 EEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEEL 56
++ + E++E E ED EEEE +E EE+EEEE EEE EE E L
Sbjct: 54 DDPYGNPDPFGEDDEGRIEVRISEDGEEEEVEEGEEDEEEEGEEESEEFEPL 105
Score = 31.3 bits (71), Expect = 0.074
Identities = 22/56 (39%), Positives = 30/56 (53%)
Query: 5 EEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEELQAGG 60
E ++ E++E E E+ EE+E EE EE+EEEE EEE EE + G
Sbjct: 51 ETSDDPYGNPDPFGEDDEGRIEVRISEDGEEEEVEEGEEDEEEEGEEESEEFEPLG 106
Score = 30.2 bits (68), Expect = 0.18
Identities = 20/51 (39%), Positives = 27/51 (52%)
Query: 5 EEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEE 55
E E + + E++E E E+ +EEE EE EE+EEEE EEE
Sbjct: 49 EPETSDDPYGNPDPFGEDDEGRIEVRISEDGEEEEVEEGEEDEEEEGEEES 99
Score = 29.8 bits (67), Expect = 0.24
Identities = 22/47 (46%), Positives = 30/47 (63%)
Query: 5 EEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEE 51
E++E + E E+ EEEE EE E++EEEE +EE EE E + EE
Sbjct: 65 EDDEGRIEVRISEDGEEEEVEEGEEDEEEEGEEESEEFEPLGDTPEE 111
Score = 29.4 bits (66), Expect = 0.38
Identities = 22/49 (44%), Positives = 29/49 (59%)
Query: 5 EEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEE 53
E+++ E E+ EEEE EE EE+EEE+ EEE EE E + EE
Sbjct: 63 FGEDDEGRIEVRISEDGEEEEVEEGEEDEEEEGEEESEEFEPLGDTPEE 111
Score = 29.0 bits (65), Expect = 0.47
Identities = 23/54 (42%), Positives = 29/54 (53%)
Query: 7 EEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEELQAGG 60
E +E E E+ EEEE +E EE+E+EE EEE EE E + EEL
Sbjct: 63 FGEDDEGRIEVRISEDGEEEEVEEGEEDEEEEGEEESEEFEPLGDTPEELTEAS 116
Score = 28.3 bits (63), Expect = 0.77
Identities = 21/50 (42%), Positives = 27/50 (54%)
Query: 6 EEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEE 55
E E ++ + E++E E ED EEEE EE EE+EEEE EE
Sbjct: 48 AEPETSDDPYGNPDPFGEDDEGRIEVRISEDGEEEEVEEGEEDEEEEGEE 97
Score = 28.3 bits (63), Expect = 1.0
Identities = 27/56 (48%), Positives = 33/56 (58%)
Query: 4 REEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEELQAG 59
R E E+ E+EE EE EE+EEEE EEE EE E + EE E E+ EE + G
Sbjct: 70 RIEVRISEDGEEEEVEEGEEDEEEEGEEESEEFEPLGDTPEELTEASEQLEEHEEG 125
Score = 27.9 bits (62), Expect = 1.1
Identities = 20/51 (39%), Positives = 28/51 (54%)
Query: 5 EEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEE 55
E E ++ + E++E + E+ EEEE EE EE+EEEE EEE
Sbjct: 48 AEPETSDDPYGNPDPFGEDDEGRIEVRISEDGEEEEVEEGEEDEEEEGEEE 98
Score = 27.9 bits (62), Expect = 1.1
Identities = 20/51 (39%), Positives = 28/51 (54%)
Query: 4 REEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEE 54
+ + +++E E E+ EEEE E+ EE+EEEE EEE EE E
Sbjct: 54 DDPYGNPDPFGEDDEGRIEVRISEDGEEEEVEEGEEDEEEEGEEESEEFEP 104
Score = 27.9 bits (62), Expect = 1.1
Identities = 22/54 (40%), Positives = 30/54 (55%)
Query: 6 EEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEELQAG 59
E+ E + E+ EEEE E+ EE+EE+E EEE EE E + EE +A
Sbjct: 63 FGEDDEGRIEVRISEDGEEEEVEEGEEDEEEEGEEESEEFEPLGDTPEELTEAS 116
Score = 27.9 bits (62), Expect = 1.2
Identities = 18/51 (35%), Positives = 27/51 (52%)
Query: 5 EEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEE 55
E E + ++ + E++E E ++ EEEE EE EE+EEEE E
Sbjct: 46 ELAEPETSDDPYGNPDPFGEDDEGRIEVRISEDGEEEEVEEGEEDEEEEGE 96
Score = 27.5 bits (61), Expect = 1.5
Identities = 28/55 (50%), Positives = 34/55 (61%)
Query: 4 REEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEELQA 58
R E+ +EEE +E EE+EEEE EEE EE E + EE E E+ EE EE QA
Sbjct: 74 RISEDGEEEEVEEGEEDEEEEGEEESEEFEPLGDTPEELTEASEQLEEHEEGFQA 128
Score = 27.1 bits (60), Expect = 2.0
Identities = 18/52 (34%), Positives = 25/52 (48%)
Query: 9 EKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEELQAGG 60
E E E ++ + ED+E E E+ EEEE EE EE+EE +
Sbjct: 46 ELAEPETSDDPYGNPDPFGEDDEGRIEVRISEDGEEEEVEEGEEDEEEEGEE 97
Score = 25.6 bits (56), Expect = 6.6
Identities = 24/51 (47%), Positives = 31/51 (60%)
Query: 6 EEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEEL 56
EEE+ EE +E+EEEE EEE EE E + EE E E+ EE EE + +
Sbjct: 79 GEEEEVEEGEEDEEEEGEEESEEFEPLGDTPEELTEASEQLEEHEEGFQAM 129
>gnl|CDD|220785 pfam10498, IFT57, Intra-flagellar transport protein 57. Eukaryotic
cilia and flagella are specialised organelles found at
the periphery of cells of diverse organisms.
Intra-flagellar transport (IFT) is required for the
assembly and maintenance of eukaryotic cilia and
flagella, and consists of the bidirectional movement of
large protein particles between the base and the distal
tip of the organelle. IFT particles contain multiple
copies of two distinct protein complexes, A and B, which
contain at least 6 and 11 protein subunits. IFT57 is
part of complex B but is not, however, required for the
core subunits to stay associated. This protein is known
as Huntington-interacting protein-1 in humans.
Length = 355
Score = 31.6 bits (72), Expect = 0.066
Identities = 17/38 (44%), Positives = 24/38 (63%)
Query: 20 EEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEELQ 57
EE+EEE +E++ E EE EEE E EE +++E Q
Sbjct: 127 PNEEDEEENVDEDDAEIILEEVEEEVEIEEVDDDEGTQ 164
Score = 31.2 bits (71), Expect = 0.095
Identities = 17/44 (38%), Positives = 26/44 (59%)
Query: 17 EEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEELQAGG 60
EE+EEE +ED+ E +E EEE E EE +++E +E +
Sbjct: 127 PNEEDEEENVDEDDAEIILEEVEEEVEIEEVDDDEGTQETKYKR 170
Score = 30.8 bits (70), Expect = 0.10
Identities = 20/75 (26%), Positives = 35/75 (46%)
Query: 18 EEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEELQAGGHGIAICQCKSAKIVTTK 77
EE+EEE ++++ E EE EEE E EE +++E + G ++ ++ +
Sbjct: 127 PNEEDEEENVDEDDAEIILEEVEEEVEIEEVDDDEGTQETKYKRGDTSLTPQAKDVLESL 186
Query: 78 TIPMQVDGEACRVNP 92
+ E RV P
Sbjct: 187 IDAAEWKLEVERVLP 201
Score = 30.8 bits (70), Expect = 0.13
Identities = 17/43 (39%), Positives = 26/43 (60%)
Query: 9 EKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEE 51
+ EE EEE +E++ E EE EEE E EE +++E +E +
Sbjct: 125 KYPNEEDEEENVDEDDAEIILEEVEEEVEIEEVDDDEGTQETK 167
Score = 30.1 bits (68), Expect = 0.25
Identities = 18/54 (33%), Positives = 29/54 (53%)
Query: 6 EEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEELQAG 59
EE EEE +E++ E EE E+E E EE +++E +E + + + QA
Sbjct: 127 PNEEDEEENVDEDDAEIILEEVEEEVEIEEVDDDEGTQETKYKRGDTSLTPQAK 180
Score = 28.5 bits (64), Expect = 0.75
Identities = 18/45 (40%), Positives = 28/45 (62%)
Query: 16 EEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEELQAGG 60
EE+EEE +E++ E EE EEE E EE +++E +E + + G
Sbjct: 128 NEEDEEENVDEDDAEIILEEVEEEVEIEEVDDDEGTQETKYKRGD 172
Score = 28.5 bits (64), Expect = 0.77
Identities = 16/57 (28%), Positives = 30/57 (52%)
Query: 1 MGKREEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEELQ 57
EE+E+E ++++ E EE EEE E EE +D+E +E + + + + +
Sbjct: 124 PKYPNEEDEEENVDEDDAEIILEEVEEEVEIEEVDDDEGTQETKYKRGDTSLTPQAK 180
Score = 26.6 bits (59), Expect = 3.9
Identities = 16/46 (34%), Positives = 29/46 (63%)
Query: 3 KREEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEE 48
KR + +E+EE+ +E++ E EE EEE E +E +++E +E +
Sbjct: 122 KRPKYPNEEDEEENVDEDDAEIILEEVEEEVEIEEVDDDEGTQETK 167
>gnl|CDD|222977 PHA03089, PHA03089, late transcription factor VLTF-4; Provisional.
Length = 191
Score = 31.3 bits (71), Expect = 0.068
Identities = 18/76 (23%), Positives = 38/76 (50%), Gaps = 1/76 (1%)
Query: 3 KREEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEELQAGGHG 62
K+ ++++KE+EE E EE + EE+EE +++ + E + + E E+ +
Sbjct: 65 KKTKKKKKEKEEVPELAAEELSDSEENEENDKKVDYELPKVQNTAAEVNHEDVIDLSDLK 124
Query: 63 IAICQ-CKSAKIVTTK 77
+A K K + ++
Sbjct: 125 LATENIIKDLKKINSR 140
Score = 28.2 bits (63), Expect = 0.88
Identities = 13/52 (25%), Positives = 31/52 (59%)
Query: 3 KREEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEE 54
R+++ K+ ++K++E+EE E E+ + EE+EE +++ + E + +
Sbjct: 58 PRKKKTTKKTKKKKKEKEEVPELAAEELSDSEENEENDKKVDYELPKVQNTA 109
Score = 27.1 bits (60), Expect = 1.9
Identities = 13/53 (24%), Positives = 31/53 (58%)
Query: 3 KREEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEE 55
++++ +K +++K+E+EE E EE + EE +E +++ + E + + E
Sbjct: 59 RKKKTTKKTKKKKKEKEEVPELAAEELSDSEENEENDKKVDYELPKVQNTAAE 111
Score = 27.1 bits (60), Expect = 2.0
Identities = 16/57 (28%), Positives = 32/57 (56%)
Query: 3 KREEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEELQAG 59
K+ +K+ +K +++++E+EE E EE D EE EE +++ + E + + A
Sbjct: 54 KKTTPRKKKTTKKTKKKKKEKEEVPELAAEELSDSEENEENDKKVDYELPKVQNTAA 110
Score = 25.9 bits (57), Expect = 4.8
Identities = 13/53 (24%), Positives = 30/53 (56%)
Query: 3 KREEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEE 55
K++ ++ ++++KE+EE E EE + EE E+ +++ + E + + E
Sbjct: 60 KKKTTKKTKKKKKEKEEVPELAAEELSDSEENEENDKKVDYELPKVQNTAAEV 112
Score = 25.5 bits (56), Expect = 6.8
Identities = 13/53 (24%), Positives = 31/53 (58%)
Query: 3 KREEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEE 55
K++ K++ K+ +++++E+EE + EE + EE EE +++ + E +
Sbjct: 53 KKKTTPRKKKTTKKTKKKKKEKEEVPELAAEELSDSEENEENDKKVDYELPKV 105
>gnl|CDD|227880 COG5593, COG5593, Nucleic-acid-binding protein possibly involved in
ribosomal biogenesis [Translation, ribosomal structure
and biogenesis].
Length = 821
Score = 31.6 bits (71), Expect = 0.069
Identities = 19/53 (35%), Positives = 31/53 (58%), Gaps = 3/53 (5%)
Query: 6 EEEEKEEEEKEEEEEEEEEEE---EEDEEEEEEDEEEEEEEEEEEEEEEEEEE 55
++E+ + E +E ++EE +E D E++ D E EE+E EEE+EEE
Sbjct: 732 DDEDAKSEGSQESDQEEGLDEIFYSFDGEQDNSDSFAESSEEDESSEEEKEEE 784
Score = 31.6 bits (71), Expect = 0.081
Identities = 20/58 (34%), Positives = 32/58 (55%), Gaps = 2/58 (3%)
Query: 3 KREEEEEKEEEEKEEE--EEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEELQA 58
K E +E ++EE +E + E++ D E +E+E EEE+EEEE +E +A
Sbjct: 737 KSEGSQESDQEEGLDEIFYSFDGEQDNSDSFAESSEEDESSEEEKEEEENKEVSAKRA 794
Score = 30.0 bits (67), Expect = 0.25
Identities = 17/53 (32%), Positives = 27/53 (50%)
Query: 1 MGKREEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEE 53
+E +EE +E + E++ + E EE+E EEE+EEEE +E
Sbjct: 736 AKSEGSQESDQEEGLDEIFYSFDGEQDNSDSFAESSEEDESSEEEKEEEENKE 788
Score = 28.9 bits (64), Expect = 0.70
Identities = 19/61 (31%), Positives = 29/61 (47%), Gaps = 6/61 (9%)
Query: 7 EEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEE------EEEEEEEEEEEEEEEELQAGG 60
+ +E+ K E +E ++EE DE D E+ E EE+E EEE+EE +
Sbjct: 729 DAIDDEDAKSEGSQESDQEEGLDEIFYSFDGEQDNSDSFAESSEEDESSEEEKEEEENKE 788
Query: 61 H 61
Sbjct: 789 V 789
Score = 27.3 bits (60), Expect = 2.2
Identities = 19/63 (30%), Positives = 31/63 (49%), Gaps = 13/63 (20%)
Query: 6 EEEEKEEEEKEEEEEEEEEEEEEDEE--------EEEEDE-----EEEEEEEEEEEEEEE 52
++E K + +E+ + E +E + EE + E + E EE+E EEE+E
Sbjct: 723 DDEPKLDAIDDEDAKSEGSQESDQEEGLDEIFYSFDGEQDNSDSFAESSEEDESSEEEKE 782
Query: 53 EEE 55
EEE
Sbjct: 783 EEE 785
Score = 26.5 bits (58), Expect = 3.9
Identities = 12/45 (26%), Positives = 24/45 (53%)
Query: 5 EEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEE 49
+ E+ + E EE+E EEE EEEE ++ + ++++ +
Sbjct: 757 FDGEQDNSDSFAESSEEDESSEEEKEEEENKEVSAKRAKKKQRKN 801
>gnl|CDD|216531 pfam01496, V_ATPase_I, V-type ATPase 116kDa subunit family. This
family consists of the 116kDa V-type ATPase (vacuolar
(H+)-ATPases) subunits, as well as V-type ATP synthase
subunit i. The V-type ATPases family are proton pumps
that acidify intracellular compartments in eukaryotic
cells for example yeast central vacuoles,
clathrin-coated and synaptic vesicles. They have
important roles in membrane trafficking processes. The
116kDa subunit (subunit a) in the V-type ATPase is part
of the V0 functional domain responsible for proton
transport. The a subunit is a transmembrane glycoprotein
with multiple putative transmembrane helices it has a
hydrophilic amino terminal and a hydrophobic carboxy
terminal. It has roles in proton transport and assembly
of the V-type ATPase complex. This subunit is encoded by
two homologous gene in yeast VPH1 and STV1.
Length = 707
Score = 31.6 bits (72), Expect = 0.070
Identities = 20/52 (38%), Positives = 27/52 (51%)
Query: 3 KREEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEE 54
EE + E E KE EE E E+E +E EE + +EE+ +E EE E
Sbjct: 72 LEEEILDLEAEIKEVEENLESLEKEINELEEWLNVLDEEKSFLDENLEELSE 123
Score = 31.6 bits (72), Expect = 0.075
Identities = 19/63 (30%), Positives = 29/63 (46%), Gaps = 1/63 (1%)
Query: 2 GKREEEEEKEEEEKEEEEEEEEEE-EEEDEEEEEEDEEEEEEEEEEEEEEEEEEELQAGG 60
GK + KE + EEE + E E +E +E E ++E E EE +EE+ L
Sbjct: 59 GKPDVPPSKEFLDLEEEILDLEAEIKEVEENLESLEKEINELEEWLNVLDEEKSFLDENL 118
Query: 61 HGI 63
+
Sbjct: 119 EEL 121
Score = 31.2 bits (71), Expect = 0.083
Identities = 21/57 (36%), Positives = 26/57 (45%)
Query: 1 MGKREEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEELQ 57
EEE E E +E EE E E+E E EE +EE+ +E EE EL
Sbjct: 69 FLDLEEEILDLEAEIKEVEENLESLEKEINELEEWLNVLDEEKSFLDENLEELSELS 125
Score = 29.3 bits (66), Expect = 0.44
Identities = 16/50 (32%), Positives = 23/50 (46%)
Query: 8 EEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEELQ 57
+ + + +E + EEE + E E E EE E E+E E EE L
Sbjct: 56 DTGGKPDVPPSKEFLDLEEEILDLEAEIKEVEENLESLEKEINELEEWLN 105
Score = 25.8 bits (57), Expect = 7.8
Identities = 16/53 (30%), Positives = 24/53 (45%), Gaps = 1/53 (1%)
Query: 6 EEEEKEEEEKEEEEEEEEEEEEEDEEE-EEEDEEEEEEEEEEEEEEEEEEELQ 57
+ K + +E + EEE + E E +E +E E E+E E EE L
Sbjct: 56 DTGGKPDVPPSKEFLDLEEEILDLEAEIKEVEENLESLEKEINELEEWLNVLD 108
>gnl|CDD|222648 pfam14283, DUF4366, Domain of unknown function (DUF4366). This
family of proteins is found in bacteria and eukaryotes.
Proteins in this family are typically between 227 and
387 amino acids in length.
Length = 213
Score = 31.2 bits (71), Expect = 0.071
Identities = 13/48 (27%), Positives = 17/48 (35%)
Query: 18 EEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEELQAGGHGIAI 65
EEE+ + E E E E E EEE + G G +
Sbjct: 115 EEEDAAAPTCSCCPVCSVNMTECTGPEPEPEPEPEEEPEKKSGMGPLL 162
Score = 31.2 bits (71), Expect = 0.085
Identities = 12/40 (30%), Positives = 13/40 (32%)
Query: 12 EEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEE 51
EEE E E E E E EEE E+
Sbjct: 115 EEEDAAAPTCSCCPVCSVNMTECTGPEPEPEPEPEEEPEK 154
Score = 30.0 bits (68), Expect = 0.18
Identities = 12/40 (30%), Positives = 14/40 (35%)
Query: 16 EEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEE 55
EEE+ E E E E E EEE E+
Sbjct: 115 EEEDAAAPTCSCCPVCSVNMTECTGPEPEPEPEPEEEPEK 154
Score = 30.0 bits (68), Expect = 0.19
Identities = 12/40 (30%), Positives = 13/40 (32%)
Query: 7 EEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEE 46
EEE E E E E E EEE E+
Sbjct: 115 EEEDAAAPTCSCCPVCSVNMTECTGPEPEPEPEPEEEPEK 154
Score = 30.0 bits (68), Expect = 0.23
Identities = 12/40 (30%), Positives = 15/40 (37%)
Query: 11 EEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEE 50
EEE+ + E E E E E EEE E+
Sbjct: 115 EEEDAAAPTCSCCPVCSVNMTECTGPEPEPEPEPEEEPEK 154
Score = 29.6 bits (67), Expect = 0.25
Identities = 13/49 (26%), Positives = 18/49 (36%)
Query: 17 EEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEELQAGGHGIAI 65
EEE+ E E E E E EEE E ++G + +
Sbjct: 115 EEEDAAAPTCSCCPVCSVNMTECTGPEPEPEPEPEEEPEKKSGMGPLLL 163
Score = 29.6 bits (67), Expect = 0.30
Identities = 11/40 (27%), Positives = 14/40 (35%)
Query: 13 EEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEE 52
EE++ E E E E E EEE E+
Sbjct: 115 EEEDAAAPTCSCCPVCSVNMTECTGPEPEPEPEPEEEPEK 154
Score = 28.8 bits (65), Expect = 0.44
Identities = 11/46 (23%), Positives = 16/46 (34%)
Query: 15 KEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEELQAGG 60
+EE+ + E E E E EEE E++ G
Sbjct: 115 EEEDAAAPTCSCCPVCSVNMTECTGPEPEPEPEPEEEPEKKSGMGP 160
Score = 28.8 bits (65), Expect = 0.44
Identities = 11/40 (27%), Positives = 14/40 (35%)
Query: 6 EEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEE 45
EEE+ E E E + E EEE E+
Sbjct: 115 EEEDAAAPTCSCCPVCSVNMTECTGPEPEPEPEPEEEPEK 154
Score = 28.8 bits (65), Expect = 0.51
Identities = 12/40 (30%), Positives = 14/40 (35%)
Query: 5 EEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEE 44
EEE+ E E E E E EEE E+
Sbjct: 115 EEEDAAAPTCSCCPVCSVNMTECTGPEPEPEPEPEEEPEK 154
Score = 28.5 bits (64), Expect = 0.74
Identities = 11/40 (27%), Positives = 14/40 (35%)
Query: 14 EKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEE 53
E+E+ E E E E E EEE E+
Sbjct: 115 EEEDAAAPTCSCCPVCSVNMTECTGPEPEPEPEPEEEPEK 154
Score = 26.1 bits (58), Expect = 4.2
Identities = 10/28 (35%), Positives = 18/28 (64%)
Query: 13 EEKEEEEEEEEEEEEEDEEEEEEDEEEE 40
+EK +++ +E + DE+EEE+DE
Sbjct: 186 QEKGAPDDDLDEYDYGDEDEEEDDEPPW 213
>gnl|CDD|221931 pfam13136, DUF3984, Protein of unknown function (DUF3984). This
family of proteins is functionally uncharacterized. This
family of proteins is found in eukaryotes. Proteins in
this family are typically between 393 and 442 amino
acids in length.
Length = 301
Score = 31.2 bits (71), Expect = 0.075
Identities = 10/34 (29%), Positives = 17/34 (50%)
Query: 6 EEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEE 39
+E+ + E ++E + E E E+E DE E
Sbjct: 239 DEDIRAEMASIDDESFSSLSDSESESEDEIDEAE 272
Score = 30.4 bits (69), Expect = 0.16
Identities = 9/34 (26%), Positives = 17/34 (50%)
Query: 11 EEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEE 44
+E+ + E ++E + E E E+E +E E
Sbjct: 239 DEDIRAEMASIDDESFSSLSDSESESEDEIDEAE 272
Score = 30.1 bits (68), Expect = 0.23
Identities = 10/34 (29%), Positives = 16/34 (47%)
Query: 18 EEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEE 51
+E+ E D+E + E E E+E +E E
Sbjct: 239 DEDIRAEMASIDDESFSSLSDSESESEDEIDEAE 272
Score = 29.3 bits (66), Expect = 0.41
Identities = 9/34 (26%), Positives = 16/34 (47%)
Query: 16 EEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEE 49
+E+ E +++ D E E E+E +E E
Sbjct: 239 DEDIRAEMASIDDESFSSLSDSESESEDEIDEAE 272
Score = 29.3 bits (66), Expect = 0.42
Identities = 10/36 (27%), Positives = 18/36 (50%)
Query: 22 EEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEELQ 57
+E+ E ++E + E E E+E +E E+Q
Sbjct: 239 DEDIRAEMASIDDESFSSLSDSESESEDEIDEAEVQ 274
Score = 27.0 bits (60), Expect = 2.1
Identities = 10/34 (29%), Positives = 16/34 (47%)
Query: 17 EEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEE 50
+E+ E +DE + E E E+E +E E
Sbjct: 239 DEDIRAEMASIDDESFSSLSDSESESEDEIDEAE 272
Score = 27.0 bits (60), Expect = 2.2
Identities = 9/34 (26%), Positives = 16/34 (47%)
Query: 19 EEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEE 52
+E+ E ++E + E E E+E +E E
Sbjct: 239 DEDIRAEMASIDDESFSSLSDSESESEDEIDEAE 272
Score = 26.6 bits (59), Expect = 2.9
Identities = 9/34 (26%), Positives = 16/34 (47%)
Query: 20 EEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEE 53
+E+ E ++E + E E E+E +E E
Sbjct: 239 DEDIRAEMASIDDESFSSLSDSESESEDEIDEAE 272
Score = 26.6 bits (59), Expect = 3.0
Identities = 9/34 (26%), Positives = 16/34 (47%)
Query: 21 EEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEE 54
+E+ E ++E + E E E+E +E E
Sbjct: 239 DEDIRAEMASIDDESFSSLSDSESESEDEIDEAE 272
Score = 26.6 bits (59), Expect = 3.4
Identities = 8/34 (23%), Positives = 15/34 (44%)
Query: 8 EEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEE 41
+E E ++E + E E E++ +E E
Sbjct: 239 DEDIRAEMASIDDESFSSLSDSESESEDEIDEAE 272
Score = 25.8 bits (57), Expect = 5.8
Identities = 8/33 (24%), Positives = 14/33 (42%)
Query: 3 KREEEEEKEEEEKEEEEEEEEEEEEEDEEEEEE 35
+ E +++ + E E EDE +E E
Sbjct: 240 EDIRAEMASIDDESFSSLSDSESESEDEIDEAE 272
Score = 25.8 bits (57), Expect = 6.0
Identities = 9/34 (26%), Positives = 15/34 (44%)
Query: 13 EEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEE 46
+E E ++E + E E E+E +E E
Sbjct: 239 DEDIRAEMASIDDESFSSLSDSESESEDEIDEAE 272
Score = 25.4 bits (56), Expect = 7.2
Identities = 7/34 (20%), Positives = 16/34 (47%)
Query: 14 EKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEE 47
+++ E ++E + + E E+E +E E
Sbjct: 239 DEDIRAEMASIDDESFSSLSDSESESEDEIDEAE 272
>gnl|CDD|184539 PRK14150, PRK14150, heat shock protein GrpE; Provisional.
Length = 193
Score = 31.0 bits (71), Expect = 0.078
Identities = 19/55 (34%), Positives = 31/55 (56%)
Query: 5 EEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEELQAG 59
EE+K +E+ EE E E E++E+ +E E ++E +E + E E + E QA
Sbjct: 2 SNEEQKTPQEQVSEEIEAEVEQQEEADEAELEDELDEADARIAELEAQLAEAQAE 56
Score = 29.9 bits (68), Expect = 0.19
Identities = 19/55 (34%), Positives = 30/55 (54%)
Query: 3 KREEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEELQ 57
K +E+ EE E E E++EE +E E ++E +E D E E + E + EE +
Sbjct: 7 KTPQEQVSEEIEAEVEQQEEADEAELEDELDEADARIAELEAQLAEAQAEERDSV 61
>gnl|CDD|236154 PRK08119, PRK08119, flagellar motor switch protein; Validated.
Length = 382
Score = 31.4 bits (72), Expect = 0.079
Identities = 14/57 (24%), Positives = 31/57 (54%)
Query: 1 MGKREEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEELQ 57
+G+ EEEEE+ EEE+ + E + ++++++ + +E E+E + +Q
Sbjct: 224 LGEEEEEEEEVEEEEAQASPAAEPATAQAAPAPKQEQQQAPPQRQEPEKEAQPVNVQ 280
Score = 28.3 bits (64), Expect = 0.93
Identities = 14/45 (31%), Positives = 22/45 (48%)
Query: 17 EEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEELQAGGH 61
EEEEEEEE EEE+ + E + ++E+++ Q
Sbjct: 226 EEEEEEEEVEEEEAQASPAAEPATAQAAPAPKQEQQQAPPQRQEP 270
Score = 27.1 bits (61), Expect = 2.1
Identities = 15/49 (30%), Positives = 27/49 (55%)
Query: 10 KEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEELQA 58
+EEEE+EE EEEE + E + ++E+++ + +E E +A
Sbjct: 226 EEEEEEEEVEEEEAQASPAAEPATAQAAPAPKQEQQQAPPQRQEPEKEA 274
>gnl|CDD|236277 PRK08493, PRK08493, NADH dehydrogenase subunit G; Validated.
Length = 819
Score = 31.6 bits (72), Expect = 0.079
Identities = 14/52 (26%), Positives = 26/52 (50%)
Query: 3 KREEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEE 54
+ EE K+ KE EE E+ E+ E+ E +EE ++E ++ ++
Sbjct: 449 LKSLEEFKQSIVKEAALSILEEIREKVLEQAEQGCENQEEVKKEVPKKVKKI 500
Score = 30.1 bits (68), Expect = 0.25
Identities = 11/47 (23%), Positives = 23/47 (48%)
Query: 2 GKREEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEE 48
+E EE +E+ E+ E+ E EE ++E ++ ++ E +
Sbjct: 459 IVKEAALSILEEIREKVLEQAEQGCENQEEVKKEVPKKVKKIPEVDT 505
Score = 28.1 bits (63), Expect = 1.0
Identities = 13/54 (24%), Positives = 26/54 (48%)
Query: 6 EEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEELQAG 59
E EE E+ E+ E+ E++EE +++ ++ ++ E + EEL
Sbjct: 462 EAALSILEEIREKVLEQAEQGCENQEEVKKEVPKKVKKIPEVDTYLLLEELGIN 515
Score = 27.7 bits (62), Expect = 1.3
Identities = 14/49 (28%), Positives = 25/49 (51%)
Query: 5 EEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEE 53
EEE + E+ ++ +E EE E+ E+ E+ E +EE ++E
Sbjct: 444 EEEAILKSLEEFKQSIVKEAALSILEEIREKVLEQAEQGCENQEEVKKE 492
Score = 27.7 bits (62), Expect = 1.4
Identities = 10/52 (19%), Positives = 24/52 (46%)
Query: 5 EEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEEL 56
+ ++ EE E+ E+ E E +E+ ++E ++ ++ E + L
Sbjct: 457 QSIVKEAALSILEEIREKVLEQAEQGCENQEEVKKEVPKKVKKIPEVDTYLL 508
Score = 27.4 bits (61), Expect = 1.8
Identities = 14/49 (28%), Positives = 24/49 (48%)
Query: 6 EEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEE 54
EEE + +E ++ +E EE E E+ E+ E +EE ++E
Sbjct: 444 EEEAILKSLEEFKQSIVKEAALSILEEIREKVLEQAEQGCENQEEVKKE 492
Score = 27.4 bits (61), Expect = 1.9
Identities = 14/47 (29%), Positives = 23/47 (48%)
Query: 9 EKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEE 55
E+E K EE ++ +E EE E+ E+ E+ E +EE +
Sbjct: 444 EEEAILKSLEEFKQSIVKEAALSILEEIREKVLEQAEQGCENQEEVK 490
Score = 26.6 bits (59), Expect = 3.8
Identities = 14/50 (28%), Positives = 26/50 (52%)
Query: 7 EEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEEL 56
EEE + EE ++ +E EE ++ E+ E+ E +EE ++E+
Sbjct: 444 EEEAILKSLEEFKQSIVKEAALSILEEIREKVLEQAEQGCENQEEVKKEV 493
>gnl|CDD|236410 PRK09202, nusA, transcription elongation factor NusA; Validated.
Length = 470
Score = 31.4 bits (72), Expect = 0.081
Identities = 17/59 (28%), Positives = 25/59 (42%)
Query: 5 EEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEELQAGGHGI 63
EE E E ++E EE E +E E E EE+ ++ E + E + GI
Sbjct: 389 EELLEIEGFDEETVEELRERAKEALETEALAQEEKLADDLLSLEGLDRELAFKLAEKGI 447
Score = 29.8 bits (68), Expect = 0.23
Identities = 16/52 (30%), Positives = 24/52 (46%)
Query: 5 EEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEEL 56
EE E E +EE EE E ++ E E +EE+ ++ E + EL
Sbjct: 387 PVEELLEIEGFDEETVEELRERAKEALETEALAQEEKLADDLLSLEGLDREL 438
Score = 28.7 bits (65), Expect = 0.73
Identities = 12/50 (24%), Positives = 22/50 (44%)
Query: 5 EEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEE 54
EE+ + E + E + E + ED E+ +E + E +EE+
Sbjct: 421 EEKLADDLLSLEGLDRELAFKLAEKGIKTLEDLAEQAVDELIDIEGDEEK 470
Score = 28.3 bits (64), Expect = 0.87
Identities = 13/50 (26%), Positives = 23/50 (46%)
Query: 5 EEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEE 54
EE E+ +E E E +EE+ +D E + E + E+ + E+
Sbjct: 403 EELRERAKEALETEALAQEEKLADDLLSLEGLDRELAFKLAEKGIKTLED 452
Score = 27.9 bits (63), Expect = 1.1
Identities = 14/53 (26%), Positives = 24/53 (45%)
Query: 3 KREEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEE 55
+ E +E+ EE E +E E E +EE+ D+ E + E + E+
Sbjct: 393 EIEGFDEETVEELRERAKEALETEALAQEEKLADDLLSLEGLDRELAFKLAEK 445
Score = 27.9 bits (63), Expect = 1.3
Identities = 11/51 (21%), Positives = 24/51 (47%)
Query: 5 EEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEE 55
+EE+ ++ E + E + E+ + E+ E+ +E + E +EE
Sbjct: 419 AQEEKLADDLLSLEGLDRELAFKLAEKGIKTLEDLAEQAVDELIDIEGDEE 469
Score = 27.5 bits (62), Expect = 1.5
Identities = 12/53 (22%), Positives = 23/53 (43%)
Query: 5 EEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEELQ 57
+E E E +EE+ ++ E + E E+ + E+ E+ +EL
Sbjct: 410 KEALETEALAQEEKLADDLLSLEGLDRELAFKLAEKGIKTLEDLAEQAVDELI 462
Score = 27.5 bits (62), Expect = 1.5
Identities = 13/51 (25%), Positives = 23/51 (45%)
Query: 6 EEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEEL 56
EE + +E E E +EE+ D+ E + E + E+ + E+L
Sbjct: 403 EELRERAKEALETEALAQEEKLADDLLSLEGLDRELAFKLAEKGIKTLEDL 453
Score = 27.1 bits (61), Expect = 2.3
Identities = 14/51 (27%), Positives = 23/51 (45%)
Query: 6 EEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEEL 56
EE E+ E E +EE E+ E ++ E E +EE+ ++ L
Sbjct: 381 EELAYVPVEELLEIEGFDEETVEELRERAKEALETEALAQEEKLADDLLSL 431
Score = 27.1 bits (61), Expect = 2.3
Identities = 13/50 (26%), Positives = 22/50 (44%)
Query: 9 EKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEELQA 58
EE + E +EE EE + +E + E +EE+ ++ E L
Sbjct: 387 PVEELLEIEGFDEETVEELRERAKEALETEALAQEEKLADDLLSLEGLDR 436
Score = 26.4 bits (59), Expect = 4.4
Identities = 12/51 (23%), Positives = 21/51 (41%)
Query: 7 EEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEELQ 57
E KE E E +EE+ ++ E + E + E+ + E+ E
Sbjct: 407 ERAKEALETEALAQEEKLADDLLSLEGLDRELAFKLAEKGIKTLEDLAEQA 457
Score = 26.4 bits (59), Expect = 4.7
Identities = 16/50 (32%), Positives = 22/50 (44%)
Query: 5 EEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEE 54
EE EE E E +EE EE E +E E E +EE+ ++
Sbjct: 381 EELAYVPVEELLEIEGFDEETVEELRERAKEALETEALAQEEKLADDLLS 430
Score = 26.0 bits (58), Expect = 6.1
Identities = 14/55 (25%), Positives = 23/55 (41%)
Query: 2 GKREEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEEL 56
G EE E+ E +E E E +EE ++ E + E + E+ + L
Sbjct: 396 GFDEETVEELRERAKEALETEALAQEEKLADDLLSLEGLDRELAFKLAEKGIKTL 450
>gnl|CDD|227447 COG5117, NOC3, Protein involved in the nuclear export of
pre-ribosomes [Translation, ribosomal structure and
biogenesis / Intracellular trafficking and secretion].
Length = 657
Score = 31.5 bits (71), Expect = 0.084
Identities = 11/51 (21%), Positives = 22/51 (43%)
Query: 2 GKREEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEE 52
+ EE E E E E + D ++E++ EE++ E +++
Sbjct: 82 DNVVADVNNGEEFLSESESEASLEIDSDIKDEKQKSLEEQKIAPEIPVKQQ 132
Score = 30.0 bits (67), Expect = 0.27
Identities = 11/43 (25%), Positives = 20/43 (46%)
Query: 15 KEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEELQ 57
EE E E E E + + +E+++ EE++ E + Q
Sbjct: 90 NGEEFLSESESEASLEIDSDIKDEKQKSLEEQKIAPEIPVKQQ 132
Score = 28.8 bits (64), Expect = 0.70
Identities = 10/41 (24%), Positives = 21/41 (51%)
Query: 13 EEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEE 53
EE E E E E + + ++E+ + EE++ E +++
Sbjct: 92 EEFLSESESEASLEIDSDIKDEKQKSLEEQKIAPEIPVKQQ 132
Score = 28.4 bits (63), Expect = 0.88
Identities = 11/53 (20%), Positives = 25/53 (47%)
Query: 3 KREEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEE 55
K ++ + EE E E E + + + +DE+++ EE++ E ++
Sbjct: 79 KTKDNVVADVNNGEEFLSESESEASLEIDSDIKDEKQKSLEEQKIAPEIPVKQ 131
Score = 28.4 bits (63), Expect = 0.89
Identities = 10/44 (22%), Positives = 21/44 (47%)
Query: 14 EKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEELQ 57
E+ E E E E D + ++E ++ EE++ E +++
Sbjct: 92 EEFLSESESEASLEIDSDIKDEKQKSLEEQKIAPEIPVKQQIDS 135
Score = 28.1 bits (62), Expect = 1.1
Identities = 11/49 (22%), Positives = 25/49 (51%)
Query: 3 KREEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEE 51
EE + E E E + + ++E++ EE++ E +++ + E+E
Sbjct: 90 NGEEFLSESESEASLEIDSDIKDEKQKSLEEQKIAPEIPVKQQIDSEKE 138
Score = 27.7 bits (61), Expect = 1.6
Identities = 9/49 (18%), Positives = 27/49 (55%)
Query: 8 EEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEEL 56
EE E + E E + + ++++++ E+++ E +++ + E+E +
Sbjct: 92 EEFLSESESEASLEIDSDIKDEKQKSLEEQKIAPEIPVKQQIDSEKERI 140
Score = 27.7 bits (61), Expect = 1.6
Identities = 12/47 (25%), Positives = 24/47 (51%)
Query: 7 EEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEE 53
EE E E E E + + ++E ++ EE + E +++ + E+E
Sbjct: 92 EEFLSESESEASLEIDSDIKDEKQKSLEEQKIAPEIPVKQQIDSEKE 138
Score = 27.3 bits (60), Expect = 1.9
Identities = 11/47 (23%), Positives = 24/47 (51%)
Query: 6 EEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEE 52
EE E E + E + + ++E+ + EE+ E +++ + E+E
Sbjct: 92 EEFLSESESEASLEIDSDIKDEKQKSLEEQKIAPEIPVKQQIDSEKE 138
>gnl|CDD|227356 COG5023, COG5023, Tubulin [Cytoskeleton].
Length = 443
Score = 31.2 bits (71), Expect = 0.084
Identities = 16/41 (39%), Positives = 23/41 (56%)
Query: 15 KEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEE 55
E EE E E ED + EE+ E E++ ++EE+EEE
Sbjct: 403 GEGMEEGEFSEAREDVADLEEEYEAAEQDSYLDDEEDEEEM 443
Score = 29.3 bits (66), Expect = 0.44
Identities = 17/42 (40%), Positives = 23/42 (54%)
Query: 3 KREEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEE 44
E EE E E E+ + EEE E E++ D+EE+EEE
Sbjct: 402 VGEGMEEGEFSEAREDVADLEEEYEAAEQDSYLDDEEDEEEM 443
Score = 28.5 bits (64), Expect = 0.67
Identities = 17/40 (42%), Positives = 23/40 (57%)
Query: 13 EEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEE 52
E EE E E E+ D EEE E E++ ++EE+EEE
Sbjct: 404 EGMEEGEFSEAREDVADLEEEYEAAEQDSYLDDEEDEEEM 443
Score = 28.1 bits (63), Expect = 1.1
Identities = 16/40 (40%), Positives = 23/40 (57%)
Query: 8 EEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEE 47
E EE E E E+ + EEE E E++ ++EE+EEE
Sbjct: 404 EGMEEGEFSEAREDVADLEEEYEAAEQDSYLDDEEDEEEM 443
>gnl|CDD|215180 PLN02316, PLN02316, synthase/transferase.
Length = 1036
Score = 31.4 bits (71), Expect = 0.085
Identities = 20/53 (37%), Positives = 31/53 (58%), Gaps = 2/53 (3%)
Query: 7 EEEKEEEEK--EEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEELQ 57
EE++ E EK +EE E E + EE+ EEE+ E + + + E E+ E+LQ
Sbjct: 252 EEKRRELEKLAKEEAERERQAEEQRRREEEKAAMEADRAQAKAEVEKRREKLQ 304
Score = 30.6 bits (69), Expect = 0.17
Identities = 17/51 (33%), Positives = 26/51 (50%)
Query: 6 EEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEEL 56
EE+ +E E+ +EE E E + EE EEE E + + + E E+ E
Sbjct: 252 EEKRRELEKLAKEEAERERQAEEQRRREEEKAAMEADRAQAKAEVEKRREK 302
Score = 29.5 bits (66), Expect = 0.43
Identities = 17/57 (29%), Positives = 30/57 (52%)
Query: 3 KREEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEELQAG 59
KR E E+ +EE E E + EE+ E+E+ E + + + E E+ E+ + L+
Sbjct: 254 KRRELEKLAKEEAERERQAEEQRRREEEKAAMEADRAQAKAEVEKRREKLQNLLKKA 310
Score = 28.3 bits (63), Expect = 0.86
Identities = 16/57 (28%), Positives = 31/57 (54%)
Query: 1 MGKREEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEELQ 57
M + E+ EE++ E E+ +EE E + + EE+ EEE+ E + + + E++
Sbjct: 241 MDEHSFEDFLLEEKRRELEKLAKEEAERERQAEEQRRREEEKAAMEADRAQAKAEVE 297
Score = 28.3 bits (63), Expect = 1.1
Identities = 16/41 (39%), Positives = 22/41 (53%)
Query: 18 EEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEELQA 58
EE+ E E+ EE E E + EE+ EEE+ E + QA
Sbjct: 252 EEKRRELEKLAKEEAERERQAEEQRRREEEKAAMEADRAQA 292
Score = 27.1 bits (60), Expect = 2.4
Identities = 14/64 (21%), Positives = 28/64 (43%), Gaps = 7/64 (10%)
Query: 3 KREEEEEKEEEE-------KEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEE 55
KR ++ ++E+ E+ +E+ + + + E EE E E+E E E+
Sbjct: 25 KRIQQNNGDKEDSSTSTSSLSVSAVEKTSNAKEEIQVDFQHNSESAVEEVEAEDEIEVEQ 84
Query: 56 LQAG 59
Q+
Sbjct: 85 NQSD 88
Score = 26.8 bits (59), Expect = 2.9
Identities = 13/48 (27%), Positives = 23/48 (47%)
Query: 5 EEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEE 52
+EE + + + E EE E EDE E E+++ + + +EE
Sbjct: 54 NAKEEIQVDFQHNSESAVEEVEAEDEIEVEQNQSDVLKSSSIVKEESI 101
Score = 26.8 bits (59), Expect = 3.0
Identities = 10/45 (22%), Positives = 19/45 (42%)
Query: 2 GKREEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEE 46
++ +EE + + + E EE E E+E E E+ +
Sbjct: 42 SSLSVSAVEKTSNAKEEIQVDFQHNSESAVEEVEAEDEIEVEQNQ 86
Score = 25.6 bits (56), Expect = 9.4
Identities = 14/43 (32%), Positives = 24/43 (55%)
Query: 16 EEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEELQA 58
EE+ E E+ +E+ E E + EE+ EEE+ E + + +A
Sbjct: 252 EEKRRELEKLAKEEAERERQAEEQRRREEEKAAMEADRAQAKA 294
>gnl|CDD|236080 PRK07734, motB, flagellar motor protein MotB; Reviewed.
Length = 259
Score = 31.3 bits (71), Expect = 0.087
Identities = 14/44 (31%), Positives = 29/44 (65%)
Query: 15 KEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEELQA 58
K+ +++ E+E+E E E+ +++EE E ++++E EEL+A
Sbjct: 66 KDFLSDQKPEDEKELSASSLEAEQAKKKEEAEAKKKKEMEELKA 109
Score = 30.9 bits (70), Expect = 0.11
Identities = 12/41 (29%), Positives = 25/41 (60%)
Query: 19 EEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEELQAG 59
+ E+E+E E E+ +++EE E ++++E EE + +Q
Sbjct: 73 KPEDEKELSASSLEAEQAKKKEEAEAKKKKEMEELKAVQKK 113
>gnl|CDD|216831 pfam01988, VIT1, VIT family. This family includes the vacuolar
Fe2+/Mn2+ uptake transporter, Ccc1 and the vacuolar iron
transporter VIT1.
Length = 209
Score = 31.1 bits (71), Expect = 0.090
Identities = 20/83 (24%), Positives = 32/83 (38%), Gaps = 21/83 (25%)
Query: 3 KREEEEEKEEEEKEEEEEEEEEEEEEDEEEE--------------------EEDEEEEEE 42
K E + E+ E E+E+ E E + E E +E E ++D +
Sbjct: 57 KSERDLEEAELEREKRELENDPEGEREELAEIYRARGLSEELARQVARELMKKDALDAMM 116
Query: 43 EEEEEEEEEEEEELQAGG-HGIA 64
EE E E L+A G++
Sbjct: 117 REELGLEPETASPLKAALASGLS 139
Score = 28.0 bits (63), Expect = 0.84
Identities = 13/32 (40%), Positives = 18/32 (56%)
Query: 9 EKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEE 40
K E + EE E E E+ E E++ E E +E E
Sbjct: 56 VKSERDLEEAELEREKRELENDPEGEREELAE 87
Score = 26.5 bits (59), Expect = 2.9
Identities = 12/32 (37%), Positives = 17/32 (53%)
Query: 13 EEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEE 44
+ E + EE E E E+ E E + + E EE E
Sbjct: 56 VKSERDLEEAELEREKRELENDPEGEREELAE 87
>gnl|CDD|227492 COG5163, NOP7, Protein required for biogenesis of the 60S ribosomal
subunit [Translation, ribosomal structure and
biogenesis].
Length = 591
Score = 31.2 bits (70), Expect = 0.090
Identities = 13/54 (24%), Positives = 27/54 (50%)
Query: 7 EEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEELQAGG 60
E+ + EE+ ++ E EE+++++EE + ++E EL+A G
Sbjct: 459 RASLMTMEETQRHSEEDLVNRFEDVRYEHVAGEEDDDDDEELQAQKELELEAQG 512
Score = 30.4 bits (68), Expect = 0.21
Identities = 13/56 (23%), Positives = 26/56 (46%)
Query: 9 EKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEELQAGGHGIA 64
EE + EE+ E+ + EE+++++EE + ++EL+ GI
Sbjct: 459 RASLMTMEETQRHSEEDLVNRFEDVRYEHVAGEEDDDDDEELQAQKELELEAQGIK 514
>gnl|CDD|222927 PHA02774, PHA02774, E1; Provisional.
Length = 613
Score = 31.0 bits (71), Expect = 0.095
Identities = 14/56 (25%), Positives = 26/56 (46%), Gaps = 2/56 (3%)
Query: 5 EEEEEKEEEEKEEEEEEEEEEEEED--EEEEEEDEEEEEEEEEEEEEEEEEEELQA 58
E E E + E E E+ + + D ++ E ++E EE+E+++QA
Sbjct: 20 EAEAECSDGEDELEDLFDTGSDISDLIDDAEVVQGGNSLALFHQQEAEEDEQQIQA 75
Score = 30.6 bits (70), Expect = 0.16
Identities = 11/57 (19%), Positives = 21/57 (36%)
Query: 18 EEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEELQAGGHGIAICQCKSAKIV 74
EE++ +EE + EEE E E E + G + + + + +
Sbjct: 113 EEQDSGLGNSLEEESTDVVEEEGVESSGGGEGGSETGQGGGNGLVLDLLRSSNRRAT 169
Score = 26.0 bits (58), Expect = 5.0
Identities = 9/44 (20%), Positives = 15/44 (34%)
Query: 16 EEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEELQAG 59
EEE + EE+ E E E + + L++
Sbjct: 121 NSLEEESTDVVEEEGVESSGGGEGGSETGQGGGNGLVLDLLRSS 164
Score = 25.6 bits (57), Expect = 8.6
Identities = 9/38 (23%), Positives = 16/38 (42%)
Query: 19 EEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEEL 56
+ EE E E E + E+E E+ + + +L
Sbjct: 8 DPEEGGSGWFLVEAEAECSDGEDELEDLFDTGSDISDL 45
>gnl|CDD|240285 PTZ00135, PTZ00135, 60S acidic ribosomal protein P0; Provisional.
Length = 310
Score = 31.1 bits (71), Expect = 0.10
Identities = 8/25 (32%), Positives = 9/25 (36%)
Query: 36 DEEEEEEEEEEEEEEEEEEELQAGG 60
EEEEEEE+ G
Sbjct: 283 AAAAAAAAAAPAEEEEEEEDDMGFG 307
Score = 30.8 bits (70), Expect = 0.12
Identities = 7/22 (31%), Positives = 9/22 (40%)
Query: 8 EEKEEEEKEEEEEEEEEEEEED 29
EEEEEEE++
Sbjct: 283 AAAAAAAAAAPAEEEEEEEDDM 304
Score = 30.0 bits (68), Expect = 0.25
Identities = 7/21 (33%), Positives = 9/21 (42%)
Query: 7 EEEKEEEEKEEEEEEEEEEEE 27
EEEEEEE++
Sbjct: 283 AAAAAAAAAAPAEEEEEEEDD 303
Score = 29.2 bits (66), Expect = 0.46
Identities = 6/21 (28%), Positives = 9/21 (42%)
Query: 12 EEEKEEEEEEEEEEEEEDEEE 32
EEEEE+E++
Sbjct: 283 AAAAAAAAAAPAEEEEEEEDD 303
Score = 28.8 bits (65), Expect = 0.48
Identities = 6/23 (26%), Positives = 9/23 (39%)
Query: 9 EKEEEEKEEEEEEEEEEEEEDEE 31
EEEEEE+++
Sbjct: 281 AAAAAAAAAAAAPAEEEEEEEDD 303
Score = 28.8 bits (65), Expect = 0.49
Identities = 7/21 (33%), Positives = 9/21 (42%)
Query: 33 EEEDEEEEEEEEEEEEEEEEE 53
EEEEEEE++
Sbjct: 283 AAAAAAAAAAPAEEEEEEEDD 303
Score = 28.8 bits (65), Expect = 0.51
Identities = 7/20 (35%), Positives = 9/20 (45%)
Query: 5 EEEEEKEEEEKEEEEEEEEE 24
EEEEEEE++
Sbjct: 284 AAAAAAAAAPAEEEEEEEDD 303
Score = 28.4 bits (64), Expect = 0.77
Identities = 6/22 (27%), Positives = 9/22 (40%)
Query: 15 KEEEEEEEEEEEEEDEEEEEED 36
EE+EEEE++
Sbjct: 283 AAAAAAAAAAPAEEEEEEEDDM 304
Score = 28.4 bits (64), Expect = 0.78
Identities = 7/23 (30%), Positives = 9/23 (39%)
Query: 14 EKEEEEEEEEEEEEEDEEEEEED 36
E+EEEEE+D
Sbjct: 281 AAAAAAAAAAAAPAEEEEEEEDD 303
Score = 28.4 bits (64), Expect = 0.78
Identities = 7/21 (33%), Positives = 9/21 (42%)
Query: 26 EEEDEEEEEEDEEEEEEEEEE 46
EEEEEEE++
Sbjct: 283 AAAAAAAAAAPAEEEEEEEDD 303
Score = 28.4 bits (64), Expect = 0.81
Identities = 7/23 (30%), Positives = 9/23 (39%)
Query: 28 EDEEEEEEDEEEEEEEEEEEEEE 50
EEEEEEE++
Sbjct: 281 AAAAAAAAAAAAPAEEEEEEEDD 303
Score = 28.4 bits (64), Expect = 0.84
Identities = 7/21 (33%), Positives = 9/21 (42%)
Query: 5 EEEEEKEEEEKEEEEEEEEEE 25
EEEEEEE++
Sbjct: 283 AAAAAAAAAAPAEEEEEEEDD 303
Score = 28.1 bits (63), Expect = 0.93
Identities = 6/21 (28%), Positives = 9/21 (42%)
Query: 13 EEKEEEEEEEEEEEEEDEEEE 33
EEEE+EE++
Sbjct: 283 AAAAAAAAAAPAEEEEEEEDD 303
Score = 27.7 bits (62), Expect = 1.3
Identities = 7/21 (33%), Positives = 9/21 (42%)
Query: 17 EEEEEEEEEEEEDEEEEEEDE 37
+EEEEEED+
Sbjct: 283 AAAAAAAAAAPAEEEEEEEDD 303
Score = 27.7 bits (62), Expect = 1.3
Identities = 7/21 (33%), Positives = 9/21 (42%)
Query: 34 EEDEEEEEEEEEEEEEEEEEE 54
EEEEEEE++
Sbjct: 283 AAAAAAAAAAPAEEEEEEEDD 303
Score = 27.7 bits (62), Expect = 1.3
Identities = 7/21 (33%), Positives = 9/21 (42%)
Query: 32 EEEEDEEEEEEEEEEEEEEEE 52
EEEEEEE++
Sbjct: 283 AAAAAAAAAAPAEEEEEEEDD 303
Score = 27.7 bits (62), Expect = 1.4
Identities = 8/26 (30%), Positives = 8/26 (30%)
Query: 35 EDEEEEEEEEEEEEEEEEEEELQAGG 60
EEEEEEE G
Sbjct: 281 AAAAAAAAAAAAPAEEEEEEEDDMGF 306
Score = 27.7 bits (62), Expect = 1.6
Identities = 7/21 (33%), Positives = 9/21 (42%)
Query: 6 EEEEKEEEEKEEEEEEEEEEE 26
EEEEEEE++
Sbjct: 283 AAAAAAAAAAPAEEEEEEEDD 303
Score = 27.3 bits (61), Expect = 1.6
Identities = 6/21 (28%), Positives = 9/21 (42%)
Query: 19 EEEEEEEEEEDEEEEEEDEEE 39
EEEEE+E++
Sbjct: 283 AAAAAAAAAAPAEEEEEEEDD 303
Score = 27.3 bits (61), Expect = 1.9
Identities = 7/21 (33%), Positives = 9/21 (42%)
Query: 31 EEEEEDEEEEEEEEEEEEEEE 51
EEEEEEE++
Sbjct: 283 AAAAAAAAAAPAEEEEEEEDD 303
Score = 26.5 bits (59), Expect = 3.1
Identities = 6/21 (28%), Positives = 9/21 (42%)
Query: 18 EEEEEEEEEEEDEEEEEEDEE 38
EEEEEE+++
Sbjct: 283 AAAAAAAAAAPAEEEEEEEDD 303
Score = 26.5 bits (59), Expect = 3.4
Identities = 6/21 (28%), Positives = 9/21 (42%)
Query: 20 EEEEEEEEEDEEEEEEDEEEE 40
EEEE+EE++
Sbjct: 283 AAAAAAAAAAPAEEEEEEEDD 303
Score = 26.1 bits (58), Expect = 5.0
Identities = 7/21 (33%), Positives = 9/21 (42%)
Query: 27 EEDEEEEEEDEEEEEEEEEEE 47
EEEEEEE++
Sbjct: 283 AAAAAAAAAAPAEEEEEEEDD 303
Score = 26.1 bits (58), Expect = 5.2
Identities = 6/21 (28%), Positives = 9/21 (42%)
Query: 21 EEEEEEEEDEEEEEEDEEEEE 41
EEE+EEE++
Sbjct: 283 AAAAAAAAAAPAEEEEEEEDD 303
Score = 25.7 bits (57), Expect = 5.8
Identities = 6/21 (28%), Positives = 9/21 (42%)
Query: 23 EEEEEEDEEEEEEDEEEEEEE 43
E+EEEEE++
Sbjct: 283 AAAAAAAAAAPAEEEEEEEDD 303
Score = 25.7 bits (57), Expect = 6.5
Identities = 7/21 (33%), Positives = 9/21 (42%)
Query: 25 EEEEDEEEEEEDEEEEEEEEE 45
EEEEEEE++
Sbjct: 283 AAAAAAAAAAPAEEEEEEEDD 303
Score = 25.4 bits (56), Expect = 7.8
Identities = 8/25 (32%), Positives = 8/25 (32%)
Query: 38 EEEEEEEEEEEEEEEEEELQAGGHG 62
EEEEEE G G
Sbjct: 283 AAAAAAAAAAPAEEEEEEEDDMGFG 307
Score = 25.4 bits (56), Expect = 8.5
Identities = 6/21 (28%), Positives = 9/21 (42%)
Query: 22 EEEEEEEDEEEEEEDEEEEEE 42
EE+EEEE++
Sbjct: 283 AAAAAAAAAAPAEEEEEEEDD 303
>gnl|CDD|237177 PRK12704, PRK12704, phosphodiesterase; Provisional.
Length = 520
Score = 30.9 bits (71), Expect = 0.10
Identities = 23/57 (40%), Positives = 41/57 (71%)
Query: 3 KREEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEELQAG 59
++EE +++ E E+ EEE E++E+E E++++E E++EEE EE EE+ +E E +G
Sbjct: 93 QKEENLDRKLELLEKREEELEKKEKELEQKQQELEKKEEELEELIEEQLQELERISG 149
Score = 29.7 bits (68), Expect = 0.27
Identities = 18/55 (32%), Positives = 39/55 (70%)
Query: 3 KREEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEELQ 57
+R E ++ E+ ++EE + + E ++ EEE +++E+E E++++E E++EEEL+
Sbjct: 80 RRNELQKLEKRLLQKEENLDRKLELLEKREEELEKKEKELEQKQQELEKKEEELE 134
Score = 28.2 bits (64), Expect = 0.92
Identities = 19/52 (36%), Positives = 36/52 (69%)
Query: 3 KREEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEE 54
++EE + E E+ EEE E++E++ E+++++ E++EEE EE EE+ +E
Sbjct: 92 LQKEENLDRKLELLEKREEELEKKEKELEQKQQELEKKEEELEELIEEQLQE 143
Score = 27.0 bits (61), Expect = 2.7
Identities = 19/51 (37%), Positives = 33/51 (64%)
Query: 8 EEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEELQA 58
+KEE + E E+ EEE +++E+E +++++E E++EEE EE EE
Sbjct: 92 LQKEENLDRKLELLEKREEELEKKEKELEQKQQELEKKEEELEELIEEQLQ 142
Score = 26.7 bits (60), Expect = 2.8
Identities = 19/58 (32%), Positives = 37/58 (63%), Gaps = 3/58 (5%)
Query: 3 KREEEEEKEEEEKEEEEEEE---EEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEELQ 57
+ E E+E E E ++ E+ ++EE D + E ++ EEE E++E+E E++++EL+
Sbjct: 70 RNEFEKELRERRNELQKLEKRLLQKEENLDRKLELLEKREEELEKKEKELEQKQQELE 127
>gnl|CDD|236545 PRK09510, tolA, cell envelope integrity inner membrane protein
TolA; Provisional.
Length = 387
Score = 30.9 bits (70), Expect = 0.11
Identities = 13/55 (23%), Positives = 37/55 (67%)
Query: 3 KREEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEELQ 57
+ EE+ +K+E+++ EE ++++ E+E ++ E++ +E++++ EE ++ L+
Sbjct: 76 RAEEQRKKKEQQQAEELQQKQAAEQERLKQLEKERLAAQEQKKQAEEAAKQAALK 130
Score = 30.5 bits (69), Expect = 0.17
Identities = 11/56 (19%), Positives = 36/56 (64%)
Query: 3 KREEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEELQA 58
+R+++E+++ EE ++++ E+E ++ E+E +E++++ EE ++ +++
Sbjct: 80 QRKKKEQQQAEELQQKQAAEQERLKQLEKERLAAQEQKKQAEEAAKQAALKQKQAE 135
Score = 30.2 bits (68), Expect = 0.18
Identities = 14/56 (25%), Positives = 35/56 (62%)
Query: 3 KREEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEELQA 58
KR EE+ K++E+++ EE ++++ E++ ++ E E +E++++ EE ++
Sbjct: 75 KRAEEQRKKKEQQQAEELQQKQAAEQERLKQLEKERLAAQEQKKQAEEAAKQAALK 130
Score = 29.4 bits (66), Expect = 0.43
Identities = 12/56 (21%), Positives = 35/56 (62%)
Query: 3 KREEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEELQA 58
K+E+++ +E ++K+ E+E ++ E++ +E +++ EE ++ ++++ E A
Sbjct: 83 KKEQQQAEELQQKQAAEQERLKQLEKERLAAQEQKKQAEEAAKQAALKQKQAEEAA 138
Score = 29.0 bits (65), Expect = 0.45
Identities = 12/56 (21%), Positives = 34/56 (60%)
Query: 3 KREEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEELQA 58
+++ EE ++++ E+E ++ E+E +E+++ EE ++ ++++ EE +A
Sbjct: 86 QQQAEELQQKQAAEQERLKQLEKERLAAQEQKKQAEEAAKQAALKQKQAEEAAAKA 141
Score = 28.2 bits (63), Expect = 0.93
Identities = 13/55 (23%), Positives = 38/55 (69%)
Query: 4 REEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEELQA 58
R+++++K + EE+ +++E+++ E+ ++++ E+E ++ E+E +E++ QA
Sbjct: 66 RQQQQQKSAKRAEEQRKKKEQQQAEELQQKQAAEQERLKQLEKERLAAQEQKKQA 120
Score = 27.8 bits (62), Expect = 1.4
Identities = 11/57 (19%), Positives = 35/57 (61%)
Query: 2 GKREEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEELQA 58
+ EE+++++E+++ EE ++++ E E ++ ++E +E++++ EE ++
Sbjct: 73 SAKRAEEQRKKKEQQQAEELQQKQAAEQERLKQLEKERLAAQEQKKQAEEAAKQAAL 129
Score = 27.1 bits (60), Expect = 2.2
Identities = 11/56 (19%), Positives = 33/56 (58%)
Query: 3 KREEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEELQA 58
++ EE ++++ ++E ++ E+E +E++++ EE ++ ++++ EE A
Sbjct: 87 QQAEELQQKQAAEQERLKQLEKERLAAQEQKKQAEEAAKQAALKQKQAEEAAAKAA 142
Score = 26.7 bits (59), Expect = 2.8
Identities = 10/55 (18%), Positives = 29/55 (52%)
Query: 4 REEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEELQA 58
++++ ++E K+ E+E +E++ + EE + ++++ EE + +A
Sbjct: 93 QQKQAAEQERLKQLEKERLAAQEQKKQAEEAAKQAALKQKQAEEAAAKAAAAAKA 147
>gnl|CDD|215059 PLN00111, PLN00111, accumulation of photosystem one; Provisional.
Length = 399
Score = 30.8 bits (70), Expect = 0.14
Identities = 12/45 (26%), Positives = 18/45 (40%)
Query: 14 EKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEELQA 58
+ E+E EE + E E ++ E E EEEL+
Sbjct: 221 GGRIVDFEDESEEPDPPPEGPSSPLLTELDDSEIEAPSSEEELKE 265
Score = 29.2 bits (66), Expect = 0.38
Identities = 16/60 (26%), Positives = 25/60 (41%), Gaps = 5/60 (8%)
Query: 5 EEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEE-----EELQAG 59
E+E EE + E E ++ E E EEE +E EE E++++G
Sbjct: 221 GGRIVDFEDESEEPDPPPEGPSSPLLTELDDSEIEAPSSEEELKELAEETLEAWEKVRSG 280
Score = 28.8 bits (65), Expect = 0.58
Identities = 17/55 (30%), Positives = 24/55 (43%)
Query: 4 REEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEELQA 58
R + E++ EE + E E +D E E EEE +E EE L+A
Sbjct: 219 RIGGRIVDFEDESEEPDPPPEGPSSPLLTELDDSEIEAPSSEEELKELAEETLEA 273
>gnl|CDD|217476 pfam03286, Pox_Ag35, Pox virus Ag35 surface protein.
Length = 198
Score = 30.5 bits (69), Expect = 0.15
Identities = 12/54 (22%), Positives = 30/54 (55%)
Query: 3 KREEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEEL 56
K +E+ +EE++ E ++++ EE E + + EE + +E + + E+++
Sbjct: 71 KDKEKLTEEEKKPESDDDKTEENENDPDNNEESGDSQESASANSLSDIDNEDDM 124
Score = 29.3 bits (66), Expect = 0.30
Identities = 14/40 (35%), Positives = 25/40 (62%)
Query: 10 KEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEE 49
K+++EK EEE++ E +++ EE E D + EE + +E
Sbjct: 70 KKDKEKLTEEEKKPESDDDKTEENENDPDNNEESGDSQES 109
Score = 27.8 bits (62), Expect = 1.1
Identities = 13/49 (26%), Positives = 30/49 (61%)
Query: 10 KEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEELQA 58
++ K++++E+ EEE++ E ++++ EE E + + EE + +E A
Sbjct: 64 TTKKSKKKDKEKLTEEEKKPESDDDKTEENENDPDNNEESGDSQESASA 112
Score = 27.8 bits (62), Expect = 1.1
Identities = 13/49 (26%), Positives = 30/49 (61%)
Query: 3 KREEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEE 51
K ++ ++++KE+ EEE++ E +D++ EE + + + EE + +E
Sbjct: 61 KPATTKKSKKKDKEKLTEEEKKPESDDDKTEENENDPDNNEESGDSQES 109
Score = 27.0 bits (60), Expect = 1.9
Identities = 12/53 (22%), Positives = 28/53 (52%)
Query: 3 KREEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEE 55
++ EEEK+ E +++ EE E + + +EE + E + + E++ ++
Sbjct: 74 EKLTEEEKKPESDDDKTEENENDPDNNEESGDSQESASANSLSDIDNEDDMDD 126
Score = 27.0 bits (60), Expect = 2.2
Identities = 13/50 (26%), Positives = 31/50 (62%)
Query: 3 KREEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEE 52
++ +K +++ +E+ EEE++ E D+++ EE+E + + EE + +E
Sbjct: 60 RKPATTKKSKKKDKEKLTEEEKKPESDDDKTEENENDPDNNEESGDSQES 109
Score = 25.9 bits (57), Expect = 5.4
Identities = 14/52 (26%), Positives = 30/52 (57%)
Query: 3 KREEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEE 54
KR K K+ +++++E+ EE+++ E +D++ EE E + + EE +
Sbjct: 54 KRPTTPRKPATTKKSKKKDKEKLTEEEKKPESDDDKTEENENDPDNNEESGD 105
Score = 25.9 bits (57), Expect = 5.5
Identities = 10/51 (19%), Positives = 27/51 (52%)
Query: 4 REEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEE 54
EE++ + +++K EE E + + EE + +E + + E++ ++ +
Sbjct: 78 EEEKKPESDDDKTEENENDPDNNEESGDSQESASANSLSDIDNEDDMDDSD 128
Score = 25.9 bits (57), Expect = 5.7
Identities = 11/52 (21%), Positives = 28/52 (53%)
Query: 2 GKREEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEE 53
K + EE+++ E ++++ EE E + ++ EE + +E + + E++
Sbjct: 72 DKEKLTEEEKKPESDDDKTEENENDPDNNEESGDSQESASANSLSDIDNEDD 123
Score = 25.5 bits (56), Expect = 7.3
Identities = 11/38 (28%), Positives = 23/38 (60%)
Query: 22 EEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEELQAG 59
++E+ E+E++ E D+++ EE E + + EE + Q
Sbjct: 72 DKEKLTEEEKKPESDDDKTEENENDPDNNEESGDSQES 109
Score = 25.1 bits (55), Expect = 9.3
Identities = 11/52 (21%), Positives = 31/52 (59%)
Query: 3 KREEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEE 54
K+ ++++KE+ +EE++ E ++++ E+ E + ++ EE + +E +
Sbjct: 66 KKSKKKDKEKLTEEEKKPESDDDKTEENENDPDNNEESGDSQESASANSLSD 117
>gnl|CDD|235316 PRK04863, mukB, cell division protein MukB; Provisional.
Length = 1486
Score = 30.7 bits (70), Expect = 0.15
Identities = 23/51 (45%), Positives = 32/51 (62%)
Query: 9 EKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEELQAG 59
EK E + + EE EE EE++E EE DE++EE E E EEE +EL++
Sbjct: 348 EKIERYQADLEELEERLEEQNEVVEEADEQQEENEARAEAAEEEVDELKSQ 398
Score = 26.8 bits (60), Expect = 2.7
Identities = 12/51 (23%), Positives = 22/51 (43%)
Query: 8 EEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEELQA 58
+ E+E ++ +EE E E E E E ++ E+ + + L A
Sbjct: 550 LDDEDELEQLQEELEARLESLSESVSEARERRMALRQQLEQLQARIQRLAA 600
Score = 26.5 bits (59), Expect = 4.3
Identities = 20/47 (42%), Positives = 28/47 (59%)
Query: 6 EEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEE 52
E+ E+ + + EE EE EE+ E EE +E+ EE E E EEE +E
Sbjct: 348 EKIERYQADLEELEERLEEQNEVVEEADEQQEENEARAEAAEEEVDE 394
>gnl|CDD|221429 pfam12118, SprA-related, SprA-related family. This protein is
found in bacteria. Proteins in this family are typically
between 234 to 465 amino acids in length. There is a
conserved GEV sequence motif.Most members are annotated
as being SprA-related.
Length = 261
Score = 30.5 bits (69), Expect = 0.15
Identities = 15/50 (30%), Positives = 32/50 (64%)
Query: 2 GKREEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEE 51
G +E +K+ E +EE EEE E+D+ E + ++++E++++EE++
Sbjct: 63 GSASQELQKQASESNDEEVVGEEEPEKDQAEAGKQLSQKQQEQQQQEEKQ 112
>gnl|CDD|115196 pfam06524, NOA36, NOA36 protein. This family consists of several
NOA36 proteins which contain 29 highly conserved
cysteine residues. The function of this protein is
unknown.
Length = 314
Score = 30.3 bits (68), Expect = 0.16
Identities = 9/39 (23%), Positives = 22/39 (56%)
Query: 8 EEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEE 46
E +++E + +EEE+ +D++ E+ D+ +E+
Sbjct: 271 YESDDDEGSSSNDYDEEEDGDDDDNEDNDDTNTNHGDED 309
Score = 29.9 bits (67), Expect = 0.26
Identities = 9/38 (23%), Positives = 22/38 (57%)
Query: 16 EEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEE 53
E +++E + DEEE+ +D++ E+ ++ +E+
Sbjct: 272 ESDDDEGSSSNDYDEEEDGDDDDNEDNDDTNTNHGDED 309
Score = 28.8 bits (64), Expect = 0.52
Identities = 8/39 (20%), Positives = 22/39 (56%)
Query: 17 EEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEE 55
E +++E D +EEE+ ++++ E+ ++ +E+
Sbjct: 271 YESDDDEGSSSNDYDEEEDGDDDDNEDNDDTNTNHGDED 309
Score = 28.8 bits (64), Expect = 0.58
Identities = 7/39 (17%), Positives = 22/39 (56%)
Query: 13 EEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEE 51
E +++E + +E+E+ +++D E+ ++ +E+
Sbjct: 271 YESDDDEGSSSNDYDEEEDGDDDDNEDNDDTNTNHGDED 309
Score = 28.8 bits (64), Expect = 0.69
Identities = 8/39 (20%), Positives = 22/39 (56%)
Query: 16 EEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEE 54
E +++E + +EEE+ D+++ E+ ++ +E+
Sbjct: 271 YESDDDEGSSSNDYDEEEDGDDDDNEDNDDTNTNHGDED 309
Score = 28.4 bits (63), Expect = 0.76
Identities = 8/39 (20%), Positives = 21/39 (53%)
Query: 6 EEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEE 44
E + +E + +EEE+ +++D E+ ++ +E+
Sbjct: 271 YESDDDEGSSSNDYDEEEDGDDDDNEDNDDTNTNHGDED 309
Score = 28.4 bits (63), Expect = 0.77
Identities = 6/39 (15%), Positives = 22/39 (56%)
Query: 14 EKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEE 52
+ +++E + ++EE+ ++D+ E+ ++ +E+
Sbjct: 271 YESDDDEGSSSNDYDEEEDGDDDDNEDNDDTNTNHGDED 309
Score = 28.4 bits (63), Expect = 0.82
Identities = 9/43 (20%), Positives = 23/43 (53%)
Query: 18 EEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEELQAGG 60
E +++E ++ +EEED ++++ E+ ++ +E G
Sbjct: 271 YESDDDEGSSSNDYDEEEDGDDDDNEDNDDTNTNHGDEDCDNG 313
Score = 28.4 bits (63), Expect = 0.87
Identities = 9/39 (23%), Positives = 21/39 (53%)
Query: 7 EEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEE 45
E ++E + +EEE+ ++D+ E+ +D +E+
Sbjct: 271 YESDDDEGSSSNDYDEEEDGDDDDNEDNDDTNTNHGDED 309
Score = 28.4 bits (63), Expect = 0.89
Identities = 7/39 (17%), Positives = 23/39 (58%)
Query: 5 EEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEE 43
E ++ E + +EEE+ +++++E+ ++ + +E+
Sbjct: 271 YESDDDEGSSSNDYDEEEDGDDDDNEDNDDTNTNHGDED 309
Score = 28.0 bits (62), Expect = 1.1
Identities = 6/39 (15%), Positives = 22/39 (56%)
Query: 12 EEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEE 50
E ++E + +EE++ +++++E+ ++ +E+
Sbjct: 271 YESDDDEGSSSNDYDEEEDGDDDDNEDNDDTNTNHGDED 309
Score = 28.0 bits (62), Expect = 1.3
Identities = 7/39 (17%), Positives = 21/39 (53%)
Query: 11 EEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEE 49
E + +E + +EEED ++++ ++ ++ +E+
Sbjct: 271 YESDDDEGSSSNDYDEEEDGDDDDNEDNDDTNTNHGDED 309
Score = 26.5 bits (58), Expect = 4.0
Identities = 6/39 (15%), Positives = 23/39 (58%)
Query: 9 EKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEE 47
+ ++++ + +EEE+ D+++ E++++ +E+
Sbjct: 271 YESDDDEGSSSNDYDEEEDGDDDDNEDNDDTNTNHGDED 309
Score = 26.1 bits (57), Expect = 4.4
Identities = 8/40 (20%), Positives = 22/40 (55%)
Query: 2 GKREEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEE 41
G +++E +EEE+ ++++ ED ++ + +E+
Sbjct: 270 GYESDDDEGSSSNDYDEEEDGDDDDNEDNDDTNTNHGDED 309
Score = 25.7 bits (56), Expect = 7.4
Identities = 8/36 (22%), Positives = 20/36 (55%)
Query: 27 EEDEEEEEEDEEEEEEEEEEEEEEEEEEELQAGGHG 62
E +++E + +EEE+ ++++ E+ + HG
Sbjct: 271 YESDDDEGSSSNDYDEEEDGDDDDNEDNDDTNTNHG 306
>gnl|CDD|218421 pfam05086, Dicty_REP, Dictyostelium (Slime Mold) REP protein. This
family consists of REP proteins from Dictyostelium
(Slime molds). REP protein is likely involved in
transcription regulation and control of DNA replication,
specifically amplification of plasmid at low copy
numbers. The formation of homomultimers may be required
for their regulatory activity.
Length = 910
Score = 30.6 bits (69), Expect = 0.16
Identities = 14/34 (41%), Positives = 27/34 (79%)
Query: 16 EEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEE 49
EE + +E E+D+ +E+ED++E+E+E+E+E+E
Sbjct: 877 EEYLISQFQENEDDDADEDEDQDEDEDEDEDEDE 910
Score = 29.8 bits (67), Expect = 0.29
Identities = 11/25 (44%), Positives = 21/25 (84%)
Query: 6 EEEEKEEEEKEEEEEEEEEEEEEDE 30
E E+ + +E E+++E+E+E+E+EDE
Sbjct: 886 ENEDDDADEDEDQDEDEDEDEDEDE 910
Score = 29.8 bits (67), Expect = 0.32
Identities = 13/34 (38%), Positives = 27/34 (79%)
Query: 22 EEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEE 55
EE + +E E++D +E+E+++E+E+E+E+E+E
Sbjct: 877 EEYLISQFQENEDDDADEDEDQDEDEDEDEDEDE 910
Score = 29.8 bits (67), Expect = 0.33
Identities = 10/23 (43%), Positives = 21/23 (91%)
Query: 12 EEEKEEEEEEEEEEEEEDEEEEE 34
E++ +E+E+++E+E+EDE+E+E
Sbjct: 888 EDDDADEDEDQDEDEDEDEDEDE 910
Score = 29.4 bits (66), Expect = 0.45
Identities = 12/34 (35%), Positives = 27/34 (79%)
Query: 17 EEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEE 50
EE + +E ED++ +E+++++E+E+E+E+E+E
Sbjct: 877 EEYLISQFQENEDDDADEDEDQDEDEDEDEDEDE 910
Score = 29.0 bits (65), Expect = 0.57
Identities = 10/25 (40%), Positives = 23/25 (92%)
Query: 14 EKEEEEEEEEEEEEEDEEEEEEDEE 38
E E+++ +E+E+++EDE+E+E+++E
Sbjct: 886 ENEDDDADEDEDQDEDEDEDEDEDE 910
Score = 28.6 bits (64), Expect = 0.74
Identities = 10/25 (40%), Positives = 22/25 (88%)
Query: 8 EEKEEEEKEEEEEEEEEEEEEDEEE 32
E ++++ E+E+++E+E+E+EDE+E
Sbjct: 886 ENEDDDADEDEDQDEDEDEDEDEDE 910
Score = 28.3 bits (63), Expect = 0.89
Identities = 12/34 (35%), Positives = 27/34 (79%)
Query: 18 EEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEE 51
EE + +E ++++ +EDE+++E+E+E+E+E+E
Sbjct: 877 EEYLISQFQENEDDDADEDEDQDEDEDEDEDEDE 910
Score = 28.3 bits (63), Expect = 0.93
Identities = 12/34 (35%), Positives = 27/34 (79%)
Query: 7 EEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEE 40
EE + +E E+++ +E+E++DE+E+E+++E+E
Sbjct: 877 EEYLISQFQENEDDDADEDEDQDEDEDEDEDEDE 910
Score = 28.3 bits (63), Expect = 0.94
Identities = 11/29 (37%), Positives = 24/29 (82%)
Query: 13 EEKEEEEEEEEEEEEEDEEEEEEDEEEEE 41
+ +E E+++ +E+E+ +E+E+EDE+E+E
Sbjct: 882 SQFQENEDDDADEDEDQDEDEDEDEDEDE 910
Score = 28.3 bits (63), Expect = 0.99
Identities = 12/34 (35%), Positives = 27/34 (79%)
Query: 12 EEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEE 45
EE + +E E+++ +++E+++EDE+E+E+E+E
Sbjct: 877 EEYLISQFQENEDDDADEDEDQDEDEDEDEDEDE 910
Score = 28.3 bits (63), Expect = 1.1
Identities = 12/34 (35%), Positives = 26/34 (76%)
Query: 21 EEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEE 54
EE + E E+++ +E+E+++E+E+E+E+E+E
Sbjct: 877 EEYLISQFQENEDDDADEDEDQDEDEDEDEDEDE 910
Score = 27.9 bits (62), Expect = 1.2
Identities = 12/34 (35%), Positives = 27/34 (79%)
Query: 11 EEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEE 44
EE + +E E+++ +EDE+++E+++E+E+E+E
Sbjct: 877 EEYLISQFQENEDDDADEDEDQDEDEDEDEDEDE 910
Score = 26.3 bits (58), Expect = 4.2
Identities = 9/29 (31%), Positives = 25/29 (86%)
Query: 5 EEEEEKEEEEKEEEEEEEEEEEEEDEEEE 33
+ +E E+++ +E+E+++E+E+E+++E+E
Sbjct: 882 SQFQENEDDDADEDEDQDEDEDEDEDEDE 910
Score = 26.3 bits (58), Expect = 4.5
Identities = 11/34 (32%), Positives = 28/34 (82%)
Query: 19 EEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEE 52
EE + +E+E+++ +++E+++E+E+E+E+E+E
Sbjct: 877 EEYLISQFQENEDDDADEDEDQDEDEDEDEDEDE 910
Score = 25.6 bits (56), Expect = 9.3
Identities = 7/26 (26%), Positives = 20/26 (76%)
Query: 1 MGKREEEEEKEEEEKEEEEEEEEEEE 26
+++ +++E++ E+E+E+E+E+E
Sbjct: 885 QENEDDDADEDEDQDEDEDEDEDEDE 910
>gnl|CDD|215521 PLN02967, PLN02967, kinase.
Length = 581
Score = 30.4 bits (68), Expect = 0.16
Identities = 18/57 (31%), Positives = 30/57 (52%)
Query: 5 EEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEELQAGGH 61
EEE+ E++ ++ + ++ +E+ ED+ E E + EE E E E EEEL
Sbjct: 128 VEEEKTEKKVRKRRKVKKMDEDVEDQGSESEVSDVEESEFVTSLENESEEELDLEKD 184
Score = 30.4 bits (68), Expect = 0.21
Identities = 18/56 (32%), Positives = 31/56 (55%)
Query: 2 GKREEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEELQ 57
EE+ EK+ ++ + ++ +E+ E++ E E D EE E E E EEE +L+
Sbjct: 127 DVEEEKTEKKVRKRRKVKKMDEDVEDQGSESEVSDVEESEFVTSLENESEEELDLE 182
Score = 26.2 bits (57), Expect = 5.1
Identities = 14/50 (28%), Positives = 28/50 (56%)
Query: 2 GKREEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEE 51
+R+ ++ E+ E + E E + EE + E+E EEE + E+++ E+
Sbjct: 139 KRRKVKKMDEDVEDQGSESEVSDVEESEFVTSLENESEEELDLEKDDGED 188
>gnl|CDD|233044 TIGR00600, rad2, DNA excision repair protein (rad2). All proteins
in this family for which functions are known are flap
endonucleases that generate the 3' incision next to DNA
damage as part of nucleotide excision repair. This
family is related to many other flap endonuclease
families including the fen1 family. This family is based
on the phylogenomic analysis of JA Eisen (1999, Ph.D.
Thesis, Stanford University) [DNA metabolism, DNA
replication, recombination, and repair].
Length = 1034
Score = 30.6 bits (69), Expect = 0.16
Identities = 19/60 (31%), Positives = 30/60 (50%), Gaps = 3/60 (5%)
Query: 2 GKREEEEEKEEEEKEEEEEE---EEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEELQA 58
R+E E+ +E EE+ EEE++ +D + E +D EE E E E+ L+A
Sbjct: 698 EHRKEIEDLLFDESEEDNIVGMIEEEKDADDFKNEWQDISLEELEALEANLLAEQNSLKA 757
Score = 27.9 bits (62), Expect = 1.4
Identities = 13/48 (27%), Positives = 23/48 (47%)
Query: 7 EEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEE 54
+ +E E+ E + E E +E E+ +E EE+ EEE++
Sbjct: 678 SQPTDESEENAENKVASIEGEHRKEIEDLLFDESEEDNIVGMIEEEKD 725
Score = 27.2 bits (60), Expect = 2.2
Identities = 14/45 (31%), Positives = 22/45 (48%)
Query: 7 EEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEE 51
E E+ E K E E +E ED +E +E+ EEE++ +
Sbjct: 683 ESEENAENKVASIEGEHRKEIEDLLFDESEEDNIVGMIEEEKDAD 727
Score = 27.2 bits (60), Expect = 2.5
Identities = 15/52 (28%), Positives = 26/52 (50%)
Query: 6 EEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEELQ 57
E EE E + E E +E E+ +E E++ EEE++ ++ + E Q
Sbjct: 683 ESEENAENKVASIEGEHRKEIEDLLFDESEEDNIVGMIEEEKDADDFKNEWQ 734
Score = 26.8 bits (59), Expect = 3.1
Identities = 13/50 (26%), Positives = 24/50 (48%)
Query: 5 EEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEE 54
+ ++ EE E + E E ++ E+ DE EE+ EEE++ +
Sbjct: 678 SQPTDESEENAENKVASIEGEHRKEIEDLLFDESEEDNIVGMIEEEKDAD 727
Score = 26.8 bits (59), Expect = 3.2
Identities = 14/50 (28%), Positives = 22/50 (44%)
Query: 6 EEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEE 55
+ E EE E + E E E E+ +E EE+ EEE++ +
Sbjct: 678 SQPTDESEENAENKVASIEGEHRKEIEDLLFDESEEDNIVGMIEEEKDAD 727
Score = 26.8 bits (59), Expect = 3.6
Identities = 13/49 (26%), Positives = 23/49 (46%)
Query: 8 EEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEEL 56
+ +E +E E + E E +E E+ +E EE+ EEE++
Sbjct: 678 SQPTDESEENAENKVASIEGEHRKEIEDLLFDESEEDNIVGMIEEEKDA 726
Score = 26.4 bits (58), Expect = 5.0
Identities = 13/51 (25%), Positives = 21/51 (41%)
Query: 5 EEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEE 55
+ K + E EE E + + E +E E+ +E EE+ EE
Sbjct: 672 LQVPSKSQPTDESEENAENKVASIEGEHRKEIEDLLFDESEEDNIVGMIEE 722
Score = 26.0 bits (57), Expect = 6.6
Identities = 13/51 (25%), Positives = 25/51 (49%)
Query: 3 KREEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEE 53
K + +E EE + + E E +E E+ ++ EE+ EEE++ +
Sbjct: 677 KSQPTDESEENAENKVASIEGEHRKEIEDLLFDESEEDNIVGMIEEEKDAD 727
>gnl|CDD|145361 pfam02161, Prog_receptor, Progesterone receptor.
Length = 456
Score = 30.4 bits (68), Expect = 0.17
Identities = 7/32 (21%), Positives = 17/32 (53%)
Query: 4 REEEEEKEEEEKEEEEEEEEEEEEEDEEEEEE 35
R + ++E +EK ++++ + E + E E
Sbjct: 51 RSCQGQEEPDEKTQDQQSLSDVERAEPEVEAS 82
Score = 30.0 bits (67), Expect = 0.28
Identities = 8/30 (26%), Positives = 16/30 (53%)
Query: 18 EEEEEEEEEEEDEEEEEEDEEEEEEEEEEE 47
+ +EE +E+ +D++ + E E E E
Sbjct: 54 QGQEEPDEKTQDQQSLSDVERAEPEVEASR 83
Score = 29.2 bits (65), Expect = 0.47
Identities = 7/30 (23%), Positives = 16/30 (53%)
Query: 25 EEEEDEEEEEEDEEEEEEEEEEEEEEEEEE 54
+ +E+ +E+ +D++ + E E E E
Sbjct: 54 QGQEEPDEKTQDQQSLSDVERAEPEVEASR 83
Score = 28.9 bits (64), Expect = 0.53
Identities = 8/30 (26%), Positives = 15/30 (50%)
Query: 23 EEEEEEDEEEEEEDEEEEEEEEEEEEEEEE 52
+ +EE DE+ +++ + E E E E
Sbjct: 54 QGQEEPDEKTQDQQSLSDVERAEPEVEASR 83
Score = 27.7 bits (61), Expect = 1.6
Identities = 9/32 (28%), Positives = 15/32 (46%)
Query: 5 EEEEEKEEEEKEEEEEEEEEEEEEDEEEEEED 36
EE +EK ++++ + E E E E E
Sbjct: 57 EEPDEKTQDQQSLSDVERAEPEVEASRGRGEG 88
>gnl|CDD|220369 pfam09731, Mitofilin, Mitochondrial inner membrane protein.
Mitofilin controls mitochondrial cristae morphology.
Mitofilin is enriched in the narrow space between the
inner boundary and the outer membranes, where it forms a
homotypic interaction and assembles into a large
multimeric protein complex. The first 78 amino acids
contain a typical amino-terminal-cleavable mitochondrial
presequence rich in positive-charged and hydroxylated
residues and a membrane anchor domain. In addition, it
has three centrally located coiled coil domains.
Length = 493
Score = 30.4 bits (69), Expect = 0.17
Identities = 19/55 (34%), Positives = 30/55 (54%)
Query: 4 REEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEELQA 58
+ EEEE+ E +E+ EE + EE+ E +E E++ E E E+EEL+
Sbjct: 183 KAEEEEELERALKEKREELLSKLEEELLARLESKEAALEKQLRLEFEREKEELRK 237
Score = 29.6 bits (67), Expect = 0.36
Identities = 18/51 (35%), Positives = 26/51 (50%)
Query: 8 EEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEELQA 58
+EK EE + EEE E E E+ E E E+EE ++ EE+L+
Sbjct: 195 KEKREELLSKLEEELLARLESKEAALEKQLRLEFEREKEELRKKYEEKLRQ 245
Score = 27.7 bits (62), Expect = 1.6
Identities = 16/55 (29%), Positives = 30/55 (54%)
Query: 4 REEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEELQA 58
+E+ EE + +EE E +E E++ + E E+EE ++ EE+ +EL+
Sbjct: 195 KEKREELLSKLEEELLARLESKEAALEKQLRLEFEREKEELRKKYEEKLRQELER 249
Score = 26.9 bits (60), Expect = 2.5
Identities = 17/55 (30%), Positives = 28/55 (50%)
Query: 4 REEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEELQA 58
EE E +E++EE + EEE E +E E++ E E E+EE ++ +
Sbjct: 187 EEELERALKEKREELLSKLEEELLARLESKEAALEKQLRLEFEREKEELRKKYEE 241
Score = 25.8 bits (57), Expect = 6.0
Identities = 15/50 (30%), Positives = 25/50 (50%)
Query: 9 EKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEELQA 58
E + EE+EE E +E+ EE + EE+ E +E E++ E +
Sbjct: 181 ELKAEEEEELERALKEKREELLSKLEEELLARLESKEAALEKQLRLEFER 230
>gnl|CDD|218673 pfam05642, Sporozoite_P67, Sporozoite P67 surface antigen. This
family consists of several Theileria P67 surface
antigens. A stage specific surface antigen of Theileria
parva, p67, is the basis for the development of an
anti-sporozoite vaccine for the control of East Coast
fever (ECF) in cattle. The antigen has been shown to
contain five distinct linear peptide sequences
recognised by sporozoite-neutralising murine monoclonal
antibodies.
Length = 727
Score = 30.4 bits (68), Expect = 0.17
Identities = 13/81 (16%), Positives = 36/81 (44%)
Query: 4 REEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEELQAGGHGI 63
R +E +E + ++ E+ ++ + + + EED+++ EEE+ + ++ + + G+
Sbjct: 87 RSFQEPVSQESEVQDNTEQNQDTKGSKTDSEEDDDDSEEEDNKSTSSKDGKGSKKTQPGV 146
Query: 64 AICQCKSAKIVTTKTIPMQVD 84
+ + T Q
Sbjct: 147 STSSGSTTSGTDLNTKQSQTG 167
Score = 28.9 bits (64), Expect = 0.67
Identities = 10/45 (22%), Positives = 25/45 (55%)
Query: 3 KREEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEE 47
+E E + E+ ++ + + + EE+D++ EEED + ++ +
Sbjct: 94 SQESEVQDNTEQNQDTKGSKTDSEEDDDDSEEEDNKSTSSKDGKG 138
>gnl|CDD|182840 PRK10921, PRK10921, twin-arginine protein translocation system
subunit TatC; Provisional.
Length = 258
Score = 30.1 bits (68), Expect = 0.17
Identities = 9/21 (42%), Positives = 12/21 (57%)
Query: 2 GKREEEEEKEEEEKEEEEEEE 22
GK EE+ + E E E+ EE
Sbjct: 238 GKGRRREEENDAEAESEKTEE 258
Score = 28.2 bits (63), Expect = 0.97
Identities = 8/17 (47%), Positives = 11/17 (64%)
Query: 15 KEEEEEEEEEEEEEDEE 31
+ EEE + E E E+ EE
Sbjct: 242 RREEENDAEAESEKTEE 258
Score = 27.8 bits (62), Expect = 1.1
Identities = 8/16 (50%), Positives = 10/16 (62%)
Query: 36 DEEEEEEEEEEEEEEE 51
EEE + E E E+ EE
Sbjct: 243 REEENDAEAESEKTEE 258
Score = 27.8 bits (62), Expect = 1.3
Identities = 9/20 (45%), Positives = 11/20 (55%)
Query: 15 KEEEEEEEEEEEEEDEEEEE 34
K EEE + E E E+ EE
Sbjct: 239 KGRRREEENDAEAESEKTEE 258
>gnl|CDD|222948 PHA02941, PHA02941, hypothetical protein; Provisional.
Length = 356
Score = 30.3 bits (68), Expect = 0.18
Identities = 21/48 (43%), Positives = 31/48 (64%)
Query: 9 EKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEEL 56
+E+E K+E +E+ DEE EE +E++EEEE EEEEE + +L
Sbjct: 308 GEEKEPKQESQEQLFNPFAIDEEMLEETQEQQEEEENEEEEENDTVKL 355
>gnl|CDD|237744 PRK14521, rpsP, 30S ribosomal protein S16; Provisional.
Length = 186
Score = 30.1 bits (68), Expect = 0.18
Identities = 19/53 (35%), Positives = 23/53 (43%)
Query: 3 KREEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEE 55
E E+K E + E E++ E EE EEEE EE EE EE
Sbjct: 131 AALEAEKKVNEARAEAVAEKKAAEAAAVAAEEAAAAEEEEAEEAPAEEAPAEE 183
Score = 29.7 bits (67), Expect = 0.23
Identities = 17/46 (36%), Positives = 19/46 (41%)
Query: 6 EEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEE 51
E + EK+ E EE EEEE EE EE EE E
Sbjct: 141 EARAEAVAEKKAAEAAAVAAEEAAAAEEEEAEEAPAEEAPAEESAE 186
Score = 28.6 bits (64), Expect = 0.51
Identities = 15/50 (30%), Positives = 22/50 (44%)
Query: 4 REEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEE 53
++ E + E E++ E E+ EE+E EE EE EE E
Sbjct: 137 KKVNEARAEAVAEKKAAEAAAVAAEEAAAAEEEEAEEAPAEEAPAEESAE 186
Score = 28.6 bits (64), Expect = 0.65
Identities = 19/53 (35%), Positives = 22/53 (41%)
Query: 7 EEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEELQAG 59
E EK+ E E E++ E EE EEEE EE EE E A
Sbjct: 134 EAEKKVNEARAEAVAEKKAAEAAAVAAEEAAAAEEEEAEEAPAEEAPAEESAE 186
Score = 26.7 bits (59), Expect = 2.6
Identities = 14/45 (31%), Positives = 19/45 (42%)
Query: 3 KREEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEE 47
R E +++ + EE E+EE EE EE EE E
Sbjct: 142 ARAEAVAEKKAAEAAAVAAEEAAAAEEEEAEEAPAEEAPAEESAE 186
Score = 25.5 bits (56), Expect = 6.4
Identities = 17/53 (32%), Positives = 22/53 (41%)
Query: 3 KREEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEE 55
K+ ++ E EK+ E E E+ E EE EEEE EE E
Sbjct: 125 KKAAKKAALEAEKKVNEARAEAVAEKKAAEAAAVAAEEAAAAEEEEAEEAPAE 177
>gnl|CDD|191187 pfam05087, Rota_VP2, Rotavirus VP2 protein. Rotavirus particles
consist of three concentric proteinaceous capsid
layers. The innermost capsid (core) is made of VP2. The
genomic RNA and the two minor proteins VP1 and VP3 are
encapsidated within this layer. The N-terminus of
rotavirus VP2 is necessary for the encapsidation of VP1
and VP3.
Length = 887
Score = 30.3 bits (68), Expect = 0.18
Identities = 10/58 (17%), Positives = 32/58 (55%), Gaps = 3/58 (5%)
Query: 3 KREEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEE---EEEEEEEEEEEEEEEELQ 57
+RE + +E+++E+++++ + +E+ D++E + + +E+ +E L+
Sbjct: 6 RREANINNNDRMQEKDDEKQDQKNRMELKEKVLDKKEEVVTDNVDSPVKEQSSQENLK 63
Score = 25.7 bits (56), Expect = 8.9
Identities = 10/54 (18%), Positives = 32/54 (59%)
Query: 4 REEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEELQ 57
R +E++ E+++++ E +E+ ++ EE ++ + +E+ +E + +E++
Sbjct: 16 RMQEKDDEKQDQKNRMELKEKVLDKKEEVVTDNVDSPVKEQSSQENLKIADEVK 69
>gnl|CDD|218954 pfam06246, Isy1, Isy1-like splicing family. Isy1 protein is
important in the optimisation of splicing.
Length = 253
Score = 30.4 bits (69), Expect = 0.18
Identities = 19/57 (33%), Positives = 32/57 (56%)
Query: 5 EEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEELQAGGH 61
EE+ E E E E+E E+ EE +E ++ED + EE+E EE+ +++ + H
Sbjct: 172 EEDGVLLEYEAEREKELIEKLVEEWKEIQDEDLQAEEDEREEDIYIPLDDDAEFVAH 228
>gnl|CDD|237028 PRK12267, PRK12267, methionyl-tRNA synthetase; Reviewed.
Length = 648
Score = 30.2 bits (69), Expect = 0.18
Identities = 11/32 (34%), Positives = 19/32 (59%)
Query: 21 EEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEE 52
+ EEE +E+ E +E EE+E++ E+ E
Sbjct: 511 DVEEEIAYIKEQMEGSAPKEPEEKEKKPEKPE 542
Score = 29.8 bits (68), Expect = 0.26
Identities = 11/32 (34%), Positives = 17/32 (53%)
Query: 18 EEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEE 49
+ EEE +E E E EE+E++ E+ E
Sbjct: 511 DVEEEIAYIKEQMEGSAPKEPEEKEKKPEKPE 542
Score = 29.8 bits (68), Expect = 0.28
Identities = 10/32 (31%), Positives = 19/32 (59%)
Query: 19 EEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEE 50
+ EEE +++ E +E EE+E++ E+ E
Sbjct: 511 DVEEEIAYIKEQMEGSAPKEPEEKEKKPEKPE 542
Score = 29.4 bits (67), Expect = 0.37
Identities = 12/34 (35%), Positives = 19/34 (55%)
Query: 4 REEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDE 37
R + EE+ KE+ E +E EE E++ E+ E
Sbjct: 509 RIDVEEEIAYIKEQMEGSAPKEPEEKEKKPEKPE 542
Score = 29.4 bits (67), Expect = 0.38
Identities = 10/32 (31%), Positives = 18/32 (56%)
Query: 13 EEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEE 44
+ +EE +E+ E +E EE E++ E+ E
Sbjct: 511 DVEEEIAYIKEQMEGSAPKEPEEKEKKPEKPE 542
Score = 29.4 bits (67), Expect = 0.40
Identities = 11/32 (34%), Positives = 18/32 (56%)
Query: 20 EEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEE 51
+ EEE E+ E +E EE+E++ E+ E
Sbjct: 511 DVEEEIAYIKEQMEGSAPKEPEEKEKKPEKPE 542
Score = 29.0 bits (66), Expect = 0.48
Identities = 10/32 (31%), Positives = 19/32 (59%)
Query: 23 EEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEE 54
+ EEE +E+ + +E EE+E++ E+ E
Sbjct: 511 DVEEEIAYIKEQMEGSAPKEPEEKEKKPEKPE 542
Score = 29.0 bits (66), Expect = 0.50
Identities = 9/32 (28%), Positives = 19/32 (59%)
Query: 12 EEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEE 43
+ E+E +E+ E +E EE++++ E+ E
Sbjct: 511 DVEEEIAYIKEQMEGSAPKEPEEKEKKPEKPE 542
Score = 29.0 bits (66), Expect = 0.55
Identities = 11/32 (34%), Positives = 19/32 (59%)
Query: 22 EEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEE 53
+ EEE +E+ E +E EE+E++ E+ E
Sbjct: 511 DVEEEIAYIKEQMEGSAPKEPEEKEKKPEKPE 542
Score = 28.6 bits (65), Expect = 0.62
Identities = 8/33 (24%), Positives = 19/33 (57%)
Query: 3 KREEEEEKEEEEKEEEEEEEEEEEEEDEEEEEE 35
+ + EEE +++ E +E EE++++ E+
Sbjct: 509 RIDVEEEIAYIKEQMEGSAPKEPEEKEKKPEKP 541
Score = 28.6 bits (65), Expect = 0.64
Identities = 11/32 (34%), Positives = 19/32 (59%)
Query: 24 EEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEE 55
+ EEE +E+ E +E EE+E++ E+ E
Sbjct: 511 DVEEEIAYIKEQMEGSAPKEPEEKEKKPEKPE 542
Score = 28.6 bits (65), Expect = 0.74
Identities = 10/32 (31%), Positives = 19/32 (59%)
Query: 17 EEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEE 48
+ EEE +E+ E ++ EE+E++ E+ E
Sbjct: 511 DVEEEIAYIKEQMEGSAPKEPEEKEKKPEKPE 542
Score = 28.6 bits (65), Expect = 0.76
Identities = 10/32 (31%), Positives = 17/32 (53%)
Query: 11 EEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEE 42
+ EE+ +E+ E E EE+E + E+ E
Sbjct: 511 DVEEEIAYIKEQMEGSAPKEPEEKEKKPEKPE 542
Score = 28.2 bits (64), Expect = 0.99
Identities = 10/32 (31%), Positives = 19/32 (59%)
Query: 16 EEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEE 47
+ EEE +E+ + +E EE+E++ E+ E
Sbjct: 511 DVEEEIAYIKEQMEGSAPKEPEEKEKKPEKPE 542
Score = 27.8 bits (63), Expect = 1.4
Identities = 11/32 (34%), Positives = 19/32 (59%)
Query: 9 EKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEE 40
+ EEE +E+ E +E EE+E++ E+ E
Sbjct: 511 DVEEEIAYIKEQMEGSAPKEPEEKEKKPEKPE 542
Score = 26.7 bits (60), Expect = 2.9
Identities = 9/32 (28%), Positives = 17/32 (53%)
Query: 25 EEEEDEEEEEEDEEEEEEEEEEEEEEEEEEEL 56
+ EE+ +E E +E EE+E++ E+
Sbjct: 511 DVEEEIAYIKEQMEGSAPKEPEEKEKKPEKPE 542
Score = 26.7 bits (60), Expect = 3.0
Identities = 8/32 (25%), Positives = 19/32 (59%)
Query: 8 EEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEE 39
+ +EE +E+ E +E +E+E++ ++ E
Sbjct: 511 DVEEEIAYIKEQMEGSAPKEPEEKEKKPEKPE 542
Score = 26.7 bits (60), Expect = 3.7
Identities = 8/32 (25%), Positives = 19/32 (59%)
Query: 26 EEEDEEEEEEDEEEEEEEEEEEEEEEEEEELQ 57
+ E+E +++ E +E EE+E++ E+ +
Sbjct: 511 DVEEEIAYIKEQMEGSAPKEPEEKEKKPEKPE 542
>gnl|CDD|220102 pfam09073, BUD22, BUD22. BUD22 has been shown in yeast to be a
nuclear protein involved in bud-site selection. It plays
a role in positioning the proximal bud pole signal. More
recently it has been shown to be involved in ribosome
biogenesis.
Length = 424
Score = 30.2 bits (68), Expect = 0.18
Identities = 17/55 (30%), Positives = 39/55 (70%)
Query: 2 GKREEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEEL 56
GK +++ +K ++++ +E ++++EEE + E+E + EE E++ ++EEEE+ + E
Sbjct: 149 GKAKKKTKKSKKKEAKESSDKDDEEESESEDESKSEESAEDDSDDEEEEDSDSED 203
Score = 29.4 bits (66), Expect = 0.32
Identities = 20/59 (33%), Positives = 37/59 (62%)
Query: 2 GKREEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEELQAGG 60
K +++E KE +K++EEE E E+E + EE E+D ++EEEE+ + E+ + + +
Sbjct: 156 KKSKKKEAKESSDKDDEEESESEDESKSEESAEDDSDDEEEEDSDSEDYSQYDGMLVDS 214
Score = 28.6 bits (64), Expect = 0.71
Identities = 17/57 (29%), Positives = 36/57 (63%)
Query: 1 MGKREEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEELQ 57
+ +++ K+ ++KE +E ++++EEE E E+E EE E++ ++EEEE+ +
Sbjct: 147 KKGKAKKKTKKSKKKEAKESSDKDDEEESESEDESKSEESAEDDSDDEEEEDSDSED 203
Score = 27.5 bits (61), Expect = 1.6
Identities = 18/55 (32%), Positives = 38/55 (69%)
Query: 1 MGKREEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEE 55
K ++ + K++ +K +++E +E +++DEEE E ++E + EE E++ ++EEEE
Sbjct: 143 ETKAKKGKAKKKTKKSKKKEAKESSDKDDEEESESEDESKSEESAEDDSDDEEEE 197
Score = 27.1 bits (60), Expect = 2.7
Identities = 16/53 (30%), Positives = 38/53 (71%)
Query: 3 KREEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEE 55
++ + +K+ ++ +++E +E +++++EE E EDE + EE E++ ++EEEE+
Sbjct: 146 AKKGKAKKKTKKSKKKEAKESSDKDDEEESESEDESKSEESAEDDSDDEEEED 198
>gnl|CDD|240521 cd13394, Syo1_like, Fungal symportin 1 (syo1) and similar proteins.
This family of eukaryotic proteins includes
Saccharomyces cerevisiae Ydl063c and Chaetomium
thermophilum Syo1, which mediate the co-import of two
ribosomal proteins, Rpl5 and Rpl11 (which both interact
with 5S rRNA) into the nucleus. Import precedes their
association with rRNA and subsequent ribosome assembly
in the nucleolus. The primary structure of syo1 is a
mixture of Armadillo- (ARM, N-terminal part of syo1) and
HEAT-repeats (C-terminal part of syo1).
Length = 597
Score = 30.4 bits (69), Expect = 0.18
Identities = 13/47 (27%), Positives = 26/47 (55%)
Query: 30 EEEEEEDEEEEEEEEEEEEEEEEEEELQAGGHGIAICQCKSAKIVTT 76
E ++++DE E+E+ +E+EEE+E++E S ++T
Sbjct: 304 ELDKKDDEAMEDEQSDEDEEEDEDDEASETLVPELSPLEISLDLLTA 350
>gnl|CDD|218517 pfam05236, TAF4, Transcription initiation factor TFIID component
TAF4 family. This region of similarity is found in
Transcription initiation factor TFIID component TAF4.
Length = 255
Score = 30.1 bits (68), Expect = 0.18
Identities = 13/42 (30%), Positives = 25/42 (59%)
Query: 6 EEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEE 47
+++KEEEE+ E E E+ ++ ++ +EE++ E EE
Sbjct: 119 AQKQKEEEERRVERRRELGLEDPEQLRLKQKAKEEQKAESEE 160
Score = 28.5 bits (64), Expect = 0.70
Identities = 14/42 (33%), Positives = 24/42 (57%)
Query: 8 EEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEE 49
+K++EE+E E E ED E+ ++ +EE++ E EE
Sbjct: 119 AQKQKEEEERRVERRRELGLEDPEQLRLKQKAKEEQKAESEE 160
Score = 28.1 bits (63), Expect = 0.99
Identities = 12/45 (26%), Positives = 25/45 (55%)
Query: 13 EEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEELQ 57
+K++EEEE E + E+ ++ +++ +EE++ E EE
Sbjct: 119 AQKQKEEEERRVERRRELGLEDPEQLRLKQKAKEEQKAESEETRH 163
Score = 27.4 bits (61), Expect = 1.7
Identities = 14/42 (33%), Positives = 25/42 (59%)
Query: 11 EEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEE 52
+++KEEEE E E E+ E+ +++ +EE++ E EE
Sbjct: 119 AQKQKEEEERRVERRRELGLEDPEQLRLKQKAKEEQKAESEE 160
Score = 25.8 bits (57), Expect = 5.9
Identities = 11/43 (25%), Positives = 27/43 (62%)
Query: 1 MGKREEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEE 43
+ ++++EEE+ E+ E E+ E+ +++ +E+++ E EE
Sbjct: 118 LAQKQKEEEERRVERRRELGLEDPEQLRLKQKAKEEQKAESEE 160
>gnl|CDD|223130 COG0052, RpsB, Ribosomal protein S2 [Translation, ribosomal
structure and biogenesis].
Length = 252
Score = 29.9 bits (68), Expect = 0.20
Identities = 14/35 (40%), Positives = 18/35 (51%)
Query: 4 REEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEE 38
R E + EEE EE+EE E+ E +EE E
Sbjct: 218 RAILEGRGGALDEEEAAIEEDEEVEEFEAKEEAAE 252
Score = 29.2 bits (66), Expect = 0.45
Identities = 14/31 (45%), Positives = 18/31 (58%)
Query: 13 EEKEEEEEEEEEEEEEDEEEEEEDEEEEEEE 43
E + +EEE EEDEE EE + +EE E
Sbjct: 222 EGRGGALDEEEAAIEEDEEVEEFEAKEEAAE 252
Score = 28.4 bits (64), Expect = 0.83
Identities = 14/31 (45%), Positives = 17/31 (54%)
Query: 20 EEEEEEEEEDEEEEEEDEEEEEEEEEEEEEE 50
E +E+E EEDEE EE E +EE E
Sbjct: 222 EGRGGALDEEEAAIEEDEEVEEFEAKEEAAE 252
Score = 28.0 bits (63), Expect = 1.00
Identities = 14/31 (45%), Positives = 17/31 (54%)
Query: 23 EEEEEEDEEEEEEDEEEEEEEEEEEEEEEEE 53
E +EEE EE+EE EE E +EE E
Sbjct: 222 EGRGGALDEEEAAIEEDEEVEEFEAKEEAAE 252
Score = 27.6 bits (62), Expect = 1.3
Identities = 14/31 (45%), Positives = 17/31 (54%)
Query: 24 EEEEEDEEEEEEDEEEEEEEEEEEEEEEEEE 54
E +EEE EE+EE EE E +EE E
Sbjct: 222 EGRGGALDEEEAAIEEDEEVEEFEAKEEAAE 252
Score = 27.6 bits (62), Expect = 1.3
Identities = 13/31 (41%), Positives = 16/31 (51%)
Query: 11 EEEEKEEEEEEEEEEEEEDEEEEEEDEEEEE 41
E +EEE EE+E+ EE E EE E
Sbjct: 222 EGRGGALDEEEAAIEEDEEVEEFEAKEEAAE 252
Score = 27.2 bits (61), Expect = 1.6
Identities = 14/31 (45%), Positives = 17/31 (54%)
Query: 17 EEEEEEEEEEEEDEEEEEEDEEEEEEEEEEE 47
E +EEE EE+EE EE E +EE E
Sbjct: 222 EGRGGALDEEEAAIEEDEEVEEFEAKEEAAE 252
Score = 27.2 bits (61), Expect = 1.9
Identities = 13/31 (41%), Positives = 17/31 (54%)
Query: 18 EEEEEEEEEEEDEEEEEEDEEEEEEEEEEEE 48
E +EEE EE+E+ EE E +EE E
Sbjct: 222 EGRGGALDEEEAAIEEDEEVEEFEAKEEAAE 252
Score = 27.2 bits (61), Expect = 2.2
Identities = 13/31 (41%), Positives = 17/31 (54%)
Query: 16 EEEEEEEEEEEEEDEEEEEEDEEEEEEEEEE 46
E +EEE EE+EE +E E +EE E
Sbjct: 222 EGRGGALDEEEAAIEEDEEVEEFEAKEEAAE 252
Score = 26.9 bits (60), Expect = 2.4
Identities = 14/31 (45%), Positives = 17/31 (54%)
Query: 25 EEEEDEEEEEEDEEEEEEEEEEEEEEEEEEE 55
E +EEE EE+EE EE E +EE E
Sbjct: 222 EGRGGALDEEEAAIEEDEEVEEFEAKEEAAE 252
Score = 26.9 bits (60), Expect = 2.6
Identities = 14/31 (45%), Positives = 17/31 (54%)
Query: 22 EEEEEEEDEEEEEEDEEEEEEEEEEEEEEEE 52
E DEEE +E+EE EE E +EE E
Sbjct: 222 EGRGGALDEEEAAIEEDEEVEEFEAKEEAAE 252
Score = 26.5 bits (59), Expect = 3.5
Identities = 12/30 (40%), Positives = 18/30 (60%)
Query: 2 GKREEEEEKEEEEKEEEEEEEEEEEEEDEE 31
G+ +E+E +E+EE EE E +EE E
Sbjct: 223 GRGGALDEEEAAIEEDEEVEEFEAKEEAAE 252
Score = 26.1 bits (58), Expect = 4.4
Identities = 12/31 (38%), Positives = 17/31 (54%)
Query: 19 EEEEEEEEEEDEEEEEEDEEEEEEEEEEEEE 49
E +EE+ EE++E EE E +EE E
Sbjct: 222 EGRGGALDEEEAAIEEDEEVEEFEAKEEAAE 252
Score = 25.3 bits (56), Expect = 9.2
Identities = 12/31 (38%), Positives = 17/31 (54%)
Query: 21 EEEEEEEEDEEEEEEDEEEEEEEEEEEEEEE 51
E ++EE E++EE EE E +EE E
Sbjct: 222 EGRGGALDEEEAAIEEDEEVEEFEAKEEAAE 252
>gnl|CDD|114011 pfam05262, Borrelia_P83, Borrelia P83/100 protein. This family
consists of several Borrelia P83/P100 antigen proteins.
Length = 489
Score = 30.4 bits (68), Expect = 0.21
Identities = 16/55 (29%), Positives = 32/55 (58%)
Query: 3 KREEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEELQ 57
K+ E +K E EK + E ++ +EE ++ + + ++E + E+E E++E E Q
Sbjct: 273 KQVAENQKREIEKAQIEIKKNDEEALKAKDHKAFDLKQESKASEKEAEDKELEAQ 327
Score = 28.4 bits (63), Expect = 0.74
Identities = 15/54 (27%), Positives = 33/54 (61%)
Query: 3 KREEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEEL 56
KRE E+ + E +K +EE + ++ + + ++E E+E E++E E +++ E +
Sbjct: 280 KREIEKAQIEIKKNDEEALKAKDHKAFDLKQESKASEKEAEDKELEAQKKREPV 333
Score = 26.5 bits (58), Expect = 4.0
Identities = 13/51 (25%), Positives = 29/51 (56%)
Query: 3 KREEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEE 53
+R+E +K++E K + + +ED++ E + E E+ + E ++ +EE
Sbjct: 246 QRDEVRQKQQEAKNLPKPADTSSPKEDKQVAENQKREIEKAQIEIKKNDEE 296
>gnl|CDD|219358 pfam07271, Cytadhesin_P30, Cytadhesin P30/P32. This family
consists of several Mycoplasma species specific
Cytadhesin P32 and P30 proteins. P30 has been found to
be membrane associated and localised on the tip
organelle. It is thought that it is important in
cytadherence and virulence.
Length = 279
Score = 30.0 bits (67), Expect = 0.21
Identities = 16/56 (28%), Positives = 28/56 (50%)
Query: 10 KEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEELQAGGHGIAI 65
K +E++ EE+E +E+ E + E E++ E + EE +E Q G +A
Sbjct: 96 KRKEKRLLEEKERQEQMAEQLQRISEQNEQQAIEIDPTEEVNTQEPTQPAGVNVAN 151
Score = 29.3 bits (65), Expect = 0.38
Identities = 15/48 (31%), Positives = 26/48 (54%), Gaps = 3/48 (6%)
Query: 3 KREEE---EEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEE 47
KR+E+ EEKE +E+ E+ + E+ E + E + EE +E +
Sbjct: 96 KRKEKRLLEEKERQEQMAEQLQRISEQNEQQAIEIDPTEEVNTQEPTQ 143
Score = 27.3 bits (60), Expect = 2.1
Identities = 13/48 (27%), Positives = 27/48 (56%)
Query: 5 EEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEE 52
+ +E++ EEKE +E+ E+ + E+ E++ E + EE +E +
Sbjct: 96 KRKEKRLLEEKERQEQMAEQLQRISEQNEQQAIEIDPTEEVNTQEPTQ 143
Score = 26.2 bits (57), Expect = 4.5
Identities = 14/51 (27%), Positives = 29/51 (56%)
Query: 9 EKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEELQAG 59
+++E+ EE+E +E+ E+ + E++E++ E + EE +E AG
Sbjct: 96 KRKEKRLLEEKERQEQMAEQLQRISEQNEQQAIEIDPTEEVNTQEPTQPAG 146
Score = 26.2 bits (57), Expect = 5.1
Identities = 12/48 (25%), Positives = 25/48 (52%)
Query: 8 EEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEE 55
+ KE+ EE+E +E+ E+ E+ +++ E + EE +E +
Sbjct: 96 KRKEKRLLEEKERQEQMAEQLQRISEQNEQQAIEIDPTEEVNTQEPTQ 143
>gnl|CDD|216289 pfam01080, Presenilin, Presenilin. Mutations in presenilin-1 are a
major cause of early onset Alzheimer's disease. It has
been found that presenilin-1 binds to beta-catenin
in-vivo. This family also contains SPE proteins from
C.elegans.
Length = 403
Score = 30.2 bits (68), Expect = 0.21
Identities = 17/63 (26%), Positives = 27/63 (42%), Gaps = 6/63 (9%)
Query: 3 KREEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEE------EEEEEEEEEEEEEL 56
+ E+ E +E + E E + + EED E+ E E+ EEEEE +
Sbjct: 267 ELPEKSSTPELSDDESDSSETESQSDSSLAPEEDAAEQPEVQSNSLPSNEKREEEEERGV 326
Query: 57 QAG 59
+ G
Sbjct: 327 KLG 329
Score = 27.5 bits (61), Expect = 1.6
Identities = 10/55 (18%), Positives = 17/55 (30%)
Query: 4 REEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEELQA 58
+ + E E+ E +DE + E E + + EE A
Sbjct: 248 KSTRSAANPDSAPTSHSTLELPEKSSTPELSDDESDSSETESQSDSSLAPEEDAA 302
>gnl|CDD|148682 pfam07222, PBP_sp32, Proacrosin binding protein sp32. This family
consists of several mammalian specific proacrosin
binding protein sp32 sequences. sp32 is a sperm specific
protein which is known to bind with with 55- and 53-kDa
proacrosins and the 49-kDa acrosin intermediate. The
exact function of sp32 is unclear, it is thought however
that the binding of sp32 to proacrosin may be involved
in packaging the acrosin zymogen into the acrosomal
matrix.
Length = 243
Score = 30.0 bits (67), Expect = 0.23
Identities = 16/53 (30%), Positives = 34/53 (64%)
Query: 3 KREEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEE 55
+ + + K+E+ + +E +E + E+++ +EE EEEE EEE ++EE + ++
Sbjct: 191 QVKAPKPKQEQLLSKLQEYLQEHKTEEKQPQEEQEEEEVEEEAKQEEGQGTDD 243
Score = 29.6 bits (66), Expect = 0.28
Identities = 17/50 (34%), Positives = 31/50 (62%)
Query: 5 EEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEE 54
+ K + K+E+ + +E ++ + EE+ +EE+EEEE EEE ++EE
Sbjct: 188 GSVQVKAPKPKQEQLLSKLQEYLQEHKTEEKQPQEEQEEEEVEEEAKQEE 237
Score = 29.2 bits (65), Expect = 0.42
Identities = 16/54 (29%), Positives = 33/54 (61%)
Query: 1 MGKREEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEE 54
+G + + + ++++ + +E +E EE++ EE+EEEE EEE ++EE +
Sbjct: 186 LGGSVQVKAPKPKQEQLLSKLQEYLQEHKTEEKQPQEEQEEEEVEEEAKQEEGQ 239
Score = 29.2 bits (65), Expect = 0.44
Identities = 17/54 (31%), Positives = 34/54 (62%)
Query: 2 GKREEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEE 55
G + + K ++E+ + +E +E + EE++ ++E+EEEE EEE ++EE +
Sbjct: 188 GSVQVKAPKPKQEQLLSKLQEYLQEHKTEEKQPQEEQEEEEVEEEAKQEEGQGT 241
Score = 28.5 bits (63), Expect = 0.64
Identities = 17/57 (29%), Positives = 31/57 (54%)
Query: 1 MGKREEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEELQ 57
+ + + ++E+ + +E E + EE + +EE+EEEE EEE ++EE Q
Sbjct: 183 SLSLGGSVQVKAPKPKQEQLLSKLQEYLQEHKTEEKQPQEEQEEEEVEEEAKQEEGQ 239
Score = 28.5 bits (63), Expect = 0.75
Identities = 16/53 (30%), Positives = 32/53 (60%)
Query: 7 EEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEELQAG 59
+ + K ++E+ + +E +E + E+++ +EE+EEEE EEE ++E G
Sbjct: 188 GSVQVKAPKPKQEQLLSKLQEYLQEHKTEEKQPQEEQEEEEVEEEAKQEEGQG 240
Score = 28.1 bits (62), Expect = 0.97
Identities = 18/52 (34%), Positives = 29/52 (55%)
Query: 11 EEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEELQAGGHG 62
+ K + ++E+ + E +E EE++ +EE+EEEE EEE Q G G
Sbjct: 189 SVQVKAPKPKQEQLLSKLQEYLQEHKTEEKQPQEEQEEEEVEEEAKQEEGQG 240
Score = 26.5 bits (58), Expect = 3.2
Identities = 13/46 (28%), Positives = 30/46 (65%)
Query: 2 GKREEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEE 47
+ + + +E +E + EE++ +EE++EEE EE+ ++EE + ++
Sbjct: 198 KQEQLLSKLQEYLQEHKTEEKQPQEEQEEEEVEEEAKQEEGQGTDD 243
>gnl|CDD|235600 PRK05771, PRK05771, V-type ATP synthase subunit I; Validated.
Length = 646
Score = 29.9 bits (68), Expect = 0.23
Identities = 21/53 (39%), Positives = 25/53 (47%)
Query: 4 REEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEEL 56
RE +EE EE EKE E EE +E + EE E E E E E + L
Sbjct: 218 REIKEELEEIEKERESLLEELKELAKKYLEELLALYEYLEIELERAEALSKFL 270
Score = 28.7 bits (65), Expect = 0.70
Identities = 19/55 (34%), Positives = 25/55 (45%)
Query: 2 GKREEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEEL 56
G E + +EE EE E+E E EE +E ++ EE E E E E E
Sbjct: 211 GTPSELIREIKEELEEIEKERESLLEELKELAKKYLEELLALYEYLEIELERAEA 265
Score = 28.0 bits (63), Expect = 1.1
Identities = 23/57 (40%), Positives = 35/57 (61%), Gaps = 1/57 (1%)
Query: 2 GKREEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEE-EEEEEEEEEEEEELQ 57
REE+++ + EE ++ EEE E+ E+E +E EEE E E E +E E+E E L+
Sbjct: 71 PLREEKKKVSVKSLEELIKDVEEELEKIEKEIKELEEEISELENEIKELEQEIERLE 127
Score = 28.0 bits (63), Expect = 1.2
Identities = 21/55 (38%), Positives = 29/55 (52%), Gaps = 2/55 (3%)
Query: 6 EEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEE--EEEEEEEEEEEEEEELQA 58
+ EEK++ + EE +D EEE E E+E E EEE E E E +EL+
Sbjct: 67 PKLNPLREEKKKVSVKSLEELIKDVEEELEKIEKEIKELEEEISELENEIKELEQ 121
Score = 27.6 bits (62), Expect = 1.5
Identities = 15/53 (28%), Positives = 24/53 (45%), Gaps = 1/53 (1%)
Query: 8 EEKEEEEKEEEEEEEEEEEE-EDEEEEEEDEEEEEEEEEEEEEEEEEEELQAG 59
E +EE +E E+E E EE ++ ++ +E E E E E E +
Sbjct: 218 REIKEELEEIEKERESLLEELKELAKKYLEELLALYEYLEIELERAEALSKFL 270
Score = 26.8 bits (60), Expect = 2.8
Identities = 18/53 (33%), Positives = 26/53 (49%)
Query: 5 EEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEELQ 57
EE E + +EE EE E+E E EE ++ ++ EE E E EL+
Sbjct: 209 EEGTPSELIREIKEELEEIEKERESLLEELKELAKKYLEELLALYEYLEIELE 261
Score = 26.8 bits (60), Expect = 3.0
Identities = 21/54 (38%), Positives = 32/54 (59%)
Query: 5 EEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEELQA 58
EE+K+ K EE ++ EEE ++ E+E E EEE E E E +E E+E++
Sbjct: 72 LREEKKKVSVKSLEELIKDVEEELEKIEKEIKELEEEISELENEIKELEQEIER 125
Score = 26.8 bits (60), Expect = 3.4
Identities = 14/52 (26%), Positives = 27/52 (51%)
Query: 7 EEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEELQA 58
+ EE+++ + +E ++ +EE E+ E+E +E EEE EL+
Sbjct: 63 RSYLPKLNPLREEKKKVSVKSLEELIKDVEEELEKIEKEIKELEEEISELEN 114
Score = 26.4 bits (59), Expect = 4.0
Identities = 24/68 (35%), Positives = 33/68 (48%), Gaps = 10/68 (14%)
Query: 1 MGKREEEEEKEEEEKEEEEEEEEEEEE----------EDEEEEEEDEEEEEEEEEEEEEE 50
+ +E +E EEE K+ E E EEE ++E EE E E E EE +E +
Sbjct: 184 VVLKELSDEVEEELKKLGFERLELEEEGTPSELIREIKEELEEIEKERESLLEELKELAK 243
Query: 51 EEEEELQA 58
+ EEL A
Sbjct: 244 KYLEELLA 251
Score = 26.4 bits (59), Expect = 4.2
Identities = 17/51 (33%), Positives = 24/51 (47%)
Query: 8 EEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEELQA 58
E E ++E EE E+E E +E +E + EE E E E E +A
Sbjct: 215 ELIREIKEELEEIEKERESLLEELKELAKKYLEELLALYEYLEIELERAEA 265
Score = 26.0 bits (58), Expect = 6.2
Identities = 15/56 (26%), Positives = 29/56 (51%)
Query: 3 KREEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEELQA 58
+ + E++++ + EE + EEE ++ E+E +E EEE E E E++
Sbjct: 63 RSYLPKLNPLREEKKKVSVKSLEELIKDVEEELEKIEKEIKELEEEISELENEIKE 118
>gnl|CDD|224680 COG1766, fliF, Flagellar basal body M-ring protein [Cell motility
and secretion].
Length = 545
Score = 30.0 bits (68), Expect = 0.24
Identities = 15/47 (31%), Positives = 23/47 (48%)
Query: 11 EEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEELQ 57
E + EEE + EEE+ EE D +E+ +EE+ +E L
Sbjct: 474 AEALEAAEEERQGPEEEDVLPEEIRDSNDEQLGLGDEEQRRGKEVLL 520
Score = 29.3 bits (66), Expect = 0.50
Identities = 14/55 (25%), Positives = 27/55 (49%)
Query: 3 KREEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEELQ 57
+R E E E+E + EEE+ E+ + +++ +EE+ +E E L+
Sbjct: 470 RRRGAEALEAAEEERQGPEEEDVLPEEIRDSNDEQLGLGDEEQRRGKEVLLERLR 524
Score = 27.0 bits (60), Expect = 2.8
Identities = 18/54 (33%), Positives = 25/54 (46%), Gaps = 4/54 (7%)
Query: 3 KREEEEEKEEEEKEEEEEEEEEEEE----EDEEEEEEDEEEEEEEEEEEEEEEE 52
+ E E EEE++ EEE+ EE DE+ DEE+ +E E E
Sbjct: 472 RGAEALEAAEEERQGPEEEDVLPEEIRDSNDEQLGLGDEEQRRGKEVLLERLRE 525
>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional.
Length = 2084
Score = 30.1 bits (67), Expect = 0.25
Identities = 21/55 (38%), Positives = 36/55 (65%)
Query: 3 KREEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEELQ 57
K EE +K EE+K++ EE ++ EE+E + E +E EE ++ EE +++E EE +
Sbjct: 1662 KAAEEAKKAEEDKKKAEEAKKAEEDEKKAAEALKKEAEEAKKAEELKKKEAEEKK 1716
Score = 29.3 bits (65), Expect = 0.40
Identities = 21/55 (38%), Positives = 41/55 (74%)
Query: 3 KREEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEELQ 57
K+ EE++K+ EE ++ EE+E++ E ++E EE ++ EE +++E EE+++ EEL+
Sbjct: 1668 KKAEEDKKKAEEAKKAEEDEKKAAEALKKEAEEAKKAEELKKKEAEEKKKAEELK 1722
Score = 29.0 bits (64), Expect = 0.62
Identities = 21/55 (38%), Positives = 37/55 (67%)
Query: 3 KREEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEELQ 57
K EE++K EE K+ EEE + + EE ++ EE+ ++ EE ++ EE+E++ E L+
Sbjct: 1641 KEAEEKKKAEELKKAEEENKIKAAEEAKKAEEDKKKAEEAKKAEEDEKKAAEALK 1695
Score = 28.2 bits (62), Expect = 1.1
Identities = 20/55 (36%), Positives = 39/55 (70%)
Query: 1 MGKREEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEE 55
+ K+E EE+K+ EE ++ EEE + + E+ ++ EED+++ EE ++ EE+E++ E
Sbjct: 1638 LKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEEDKKKAEEAKKAEEDEKKAAE 1692
Score = 28.2 bits (62), Expect = 1.2
Identities = 22/57 (38%), Positives = 38/57 (66%)
Query: 1 MGKREEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEELQ 57
+ K EE +K EE K++E EE+++ EE + EEE + EE ++E EE++++ EE +
Sbjct: 1694 LKKEAEEAKKAEELKKKEAEEKKKAEELKKAEEENKIKAEEAKKEAEEDKKKAEEAK 1750
Score = 28.2 bits (62), Expect = 1.3
Identities = 20/53 (37%), Positives = 36/53 (67%)
Query: 3 KREEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEE 55
K+ EE +K EEE + + EE ++ EED+++ EE ++ EE+E++ E ++E E
Sbjct: 1647 KKAEELKKAEEENKIKAAEEAKKAEEDKKKAEEAKKAEEDEKKAAEALKKEAE 1699
Score = 27.8 bits (61), Expect = 1.7
Identities = 20/53 (37%), Positives = 37/53 (69%)
Query: 3 KREEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEE 55
K+ EE +K EE++++ E ++E EE ++ EE ++E EE+++ EE ++ EEE
Sbjct: 1675 KKAEEAKKAEEDEKKAAEALKKEAEEAKKAEELKKKEAEEKKKAEELKKAEEE 1727
Score = 27.4 bits (60), Expect = 2.0
Identities = 27/75 (36%), Positives = 46/75 (61%)
Query: 3 KREEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEELQAGGHG 62
K EE ++KE EEK++ EE ++ EEE + EE +E EE++++ EE +++EEE + H
Sbjct: 1703 KAEELKKKEAEEKKKAEELKKAEEENKIKAEEAKKEAEEDKKKAEEAKKDEEEKKKIAHL 1762
Query: 63 IAICQCKSAKIVTTK 77
+ K+ +I K
Sbjct: 1763 KKEEEKKAEEIRKEK 1777
Score = 27.0 bits (59), Expect = 2.5
Identities = 21/55 (38%), Positives = 38/55 (69%)
Query: 3 KREEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEELQ 57
K EEE++K E+ K++E EE+++ EE + EEE + EE ++ EE++++ EE +
Sbjct: 1627 KAEEEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEEDKKKAEEAK 1681
Score = 27.0 bits (59), Expect = 2.6
Identities = 21/55 (38%), Positives = 36/55 (65%)
Query: 3 KREEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEELQ 57
K EE+E+K E ++E EE ++ EE ++E EE ++ EE ++ EEE + + EE +
Sbjct: 1682 KAEEDEKKAAEALKKEAEEAKKAEELKKKEAEEKKKAEELKKAEEENKIKAEEAK 1736
Score = 27.0 bits (59), Expect = 2.7
Identities = 18/53 (33%), Positives = 36/53 (67%)
Query: 3 KREEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEE 55
K+ EEE K + +E ++ EE++++ E+ ++ EEDE++ E ++E EE ++ E
Sbjct: 1653 KKAEEENKIKAAEEAKKAEEDKKKAEEAKKAEEDEKKAAEALKKEAEEAKKAE 1705
Score = 27.0 bits (59), Expect = 3.2
Identities = 21/53 (39%), Positives = 34/53 (64%)
Query: 3 KREEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEE 55
K E +KE EE ++ EE +++E EE ++ EE + EEE + + EE ++E EE
Sbjct: 1689 KAAEALKKEAEEAKKAEELKKKEAEEKKKAEELKKAEEENKIKAEEAKKEAEE 1741
Score = 26.6 bits (58), Expect = 3.8
Identities = 18/55 (32%), Positives = 38/55 (69%)
Query: 3 KREEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEELQ 57
K EEE + + E+ ++ EE++++ EE ++ EE++++ E ++E EE ++ EEL+
Sbjct: 1654 KAEEENKIKAAEEAKKAEEDKKKAEEAKKAEEDEKKAAEALKKEAEEAKKAEELK 1708
Score = 26.6 bits (58), Expect = 4.4
Identities = 19/53 (35%), Positives = 37/53 (69%)
Query: 3 KREEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEE 55
K++ EE K+ EE E++ E ++E E+ ++ EE +++E EE+++ EE ++ EE
Sbjct: 1674 KKKAEEAKKAEEDEKKAAEALKKEAEEAKKAEELKKKEAEEKKKAEELKKAEE 1726
Score = 25.9 bits (56), Expect = 6.6
Identities = 19/53 (35%), Positives = 37/53 (69%)
Query: 3 KREEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEE 55
K+ EE+EK+ E ++E EE ++ EE +++E E++++ EE ++ EEE + + E
Sbjct: 1681 KKAEEDEKKAAEALKKEAEEAKKAEELKKKEAEEKKKAEELKKAEEENKIKAE 1733
Score = 25.9 bits (56), Expect = 7.9
Identities = 16/55 (29%), Positives = 38/55 (69%)
Query: 3 KREEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEELQ 57
K++E EEK++ E+ ++ EEE + + +E ++ E+++++ EE ++ EE+E++
Sbjct: 1639 KKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEEDKKKAEEAKKAEEDEKKAAEA 1693
Score = 25.5 bits (55), Expect = 8.5
Identities = 20/51 (39%), Positives = 35/51 (68%)
Query: 4 REEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEE 54
+ EE +K EE K + EE ++ EEE+ + E+ + +E EE+++ EE ++ EEE
Sbjct: 1608 KAEEAKKAEEAKIKAEELKKAEEEKKKVEQLKKKEAEEKKKAEELKKAEEE 1658
Score = 25.5 bits (55), Expect = 8.6
Identities = 21/53 (39%), Positives = 35/53 (66%)
Query: 3 KREEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEE 55
K EE + K EE K+ EEE+++ E+ + +E EE+ + EE ++ EEE + + EE
Sbjct: 1614 KAEEAKIKAEELKKAEEEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEE 1666
>gnl|CDD|220271 pfam09507, CDC27, DNA polymerase subunit Cdc27. This protein forms
the C subunit of DNA polymerase delta. It carries the
essential residues for binding to the Pol1 subunit of
polymerase alpha, from residues 293-332, which are
characterized by the motif D--G--VT, referred to as the
DPIM motif. The first 160 residues of the protein form
the minimal domain for binding to the B subunit, Cdc1,
of polymerase delta, the final 10 C-terminal residues,
362-372, being the DNA sliding clamp, PCNA, binding
motif.
Length = 427
Score = 29.8 bits (67), Expect = 0.25
Identities = 23/45 (51%), Positives = 30/45 (66%)
Query: 7 EEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEE 51
EEE EE+EKE+ + ++ E+EDE+EE E E EEEE EE E
Sbjct: 284 EEETEEKEKEKRKRLKKMMEDEDEDEEMEIVPESPVEEEESEEPE 328
Score = 29.4 bits (66), Expect = 0.36
Identities = 21/53 (39%), Positives = 32/53 (60%)
Query: 3 KREEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEE 55
E+E+EK + K+ E+E+E+EE E E +EEE EE E ++EEE+
Sbjct: 287 TEEKEKEKRKRLKKMMEDEDEDEEMEIVPESPVEEEESEEPEPPPLPKKEEEK 339
Score = 27.5 bits (61), Expect = 1.8
Identities = 23/53 (43%), Positives = 31/53 (58%)
Query: 3 KREEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEE 55
K E EEE EE+E+E+ + ++ E+E+EDEE E E EEEE EE
Sbjct: 275 KPSGERSDSEEETEEKEKEKRKRLKKMMEDEDEDEEMEIVPESPVEEEESEEP 327
Score = 26.7 bits (59), Expect = 3.3
Identities = 17/51 (33%), Positives = 30/51 (58%)
Query: 2 GKREEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEE 52
K+ +E+++++E E +EE EEE + EDE E +E+E+E+E
Sbjct: 223 KKKTKEKKEKKEASESTVKEESEEESGKRDVILEDESAEPTGLDEDEDEDE 273
Score = 26.7 bits (59), Expect = 3.5
Identities = 18/54 (33%), Positives = 33/54 (61%)
Query: 3 KREEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEEL 56
+E+E+++E + E + EEE EE E+E+ + ++ E+E+E+EE E E
Sbjct: 264 GLDEDEDEDEPKPSGERSDSEEETEEKEKEKRKRLKKMMEDEDEDEEMEIVPES 317
Score = 26.0 bits (57), Expect = 6.6
Identities = 16/58 (27%), Positives = 35/58 (60%)
Query: 3 KREEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEELQAGG 60
+ E +E+E E+E + E + +EE EE+++E+ + ++ E+E+E+EE++
Sbjct: 258 ESAEPTGLDEDEDEDEPKPSGERSDSEEETEEKEKEKRKRLKKMMEDEDEDEEMEIVP 315
Score = 25.6 bits (56), Expect = 7.2
Identities = 17/51 (33%), Positives = 32/51 (62%)
Query: 3 KREEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEE 53
K++ +E+KE++E E +EE EEE + + ++E E +E+E+E+E
Sbjct: 223 KKKTKEKKEKKEASESTVKEESEEESGKRDVILEDESAEPTGLDEDEDEDE 273
>gnl|CDD|173965 cd08045, TAF4, TATA Binding Protein (TBP) Associated Factor 4
(TAF4) is one of several TAFs that bind TBP and is
involved in forming Transcription Factor IID (TFIID)
complex. The TATA Binding Protein (TBP) Associated
Factor 4 (TAF4) is one of several TAFs that bind TBP and
are involved in forming the Transcription Factor IID
(TFIID) complex. TFIID is one of seven General
Transcription Factors (GTF) (TFIIA, TFIIB, TFIID, TFIIE,
TFIIF, and TFIID) that are involved in accurate
initiation of transcription by RNA polymerase II in
eukaryote. TFIID plays an important role in the
recognition of promoter DNA and assembly of the
pre-initiation complex. TFIID complex is composed of the
TBP and at least 13 TAFs. TAFs from various species were
originally named by their predicted molecular weight or
their electrophoretic mobility in polyacrylamide gels. A
new, unified nomenclature for the pol II TAFs has been
suggested to show the relationship between TAF orthologs
and paralogs. Several hypotheses are proposed for TAFs
functions such as serving as activator-binding sites,
core-promoter recognition or a role in essential
catalytic activity. Each TAF, with the help of a
specific activator, is required only for the expression
of subset of genes and is not universally involved for
transcription as are GTFs. In yeast and human cells,
TAFs have been found as components of other complexes
besides TFIID. Several TAFs interact via histone-fold
(HFD) motifs; HFD is the interaction motif involved in
heterodimerization of the core histones and their
assembly into nucleosome octamers. The minimal HFD
contains three alpha-helices linked by two loops and is
found in core histones, TAFS and many other
transcription factors. TFIID has a histone octamer-like
substructure. TAF4 domain interacts with TAF12 and makes
a novel histone-like heterodimer that binds DNA and has
a core promoter function of a subset of genes.
Length = 212
Score = 29.6 bits (67), Expect = 0.25
Identities = 17/46 (36%), Positives = 28/46 (60%)
Query: 6 EEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEE 51
E+ E+EEEEK +EEE E E+ +++ +E ++EE+EE
Sbjct: 120 EQLEREEEEKRDEEERERLLRAAKSRSEQSRLKQKAKEMQKEEDEE 165
Score = 28.1 bits (63), Expect = 1.1
Identities = 15/45 (33%), Positives = 28/45 (62%)
Query: 11 EEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEE 55
E+ E+EEEE+ +EEE E + E+ +++ +E ++EE+E
Sbjct: 120 EQLEREEEEKRDEEERERLLRAAKSRSEQSRLKQKAKEMQKEEDE 164
Score = 28.1 bits (63), Expect = 1.1
Identities = 15/43 (34%), Positives = 28/43 (65%)
Query: 3 KREEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEE 45
+REEEE+++EEE+E + E+ +++ E ++EE+EE
Sbjct: 123 EREEEEKRDEEERERLLRAAKSRSEQSRLKQKAKEMQKEEDEE 165
Score = 27.3 bits (61), Expect = 1.8
Identities = 15/46 (32%), Positives = 27/46 (58%)
Query: 8 EEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEE 53
E+ E EE+E+ +EEE E + E +++ +E ++EE+EE
Sbjct: 120 EQLEREEEEKRDEEERERLLRAAKSRSEQSRLKQKAKEMQKEEDEE 165
Score = 26.1 bits (58), Expect = 4.0
Identities = 15/46 (32%), Positives = 29/46 (63%)
Query: 5 EEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEE 50
E+ E +EEE+++EEE E + E+ +++ +E ++EE+EE
Sbjct: 120 EQLEREEEEKRDEEERERLLRAAKSRSEQSRLKQKAKEMQKEEDEE 165
Score = 25.8 bits (57), Expect = 6.5
Identities = 12/47 (25%), Positives = 27/47 (57%)
Query: 1 MGKREEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEE 47
+ + E EEE++ +E+E E + ++ ++ +E ++EE+EE
Sbjct: 119 LEQLEREEEEKRDEEERERLLRAAKSRSEQSRLKQKAKEMQKEEDEE 165
>gnl|CDD|219956 pfam08658, Rad54_N, Rad54 N terminal. This is the N terminal of
the DNA repair protein Rad54.
Length = 191
Score = 29.6 bits (67), Expect = 0.26
Identities = 8/26 (30%), Positives = 17/26 (65%)
Query: 29 DEEEEEEDEEEEEEEEEEEEEEEEEE 54
D++ + E+E+ E+++E EE E +
Sbjct: 142 DDKPKIEEEKAEKDQEPEESETKLSN 167
Score = 29.6 bits (67), Expect = 0.29
Identities = 10/27 (37%), Positives = 19/27 (70%)
Query: 33 EEEDEEEEEEEEEEEEEEEEEEELQAG 59
+++ + EEE+ E+++E EE E +L G
Sbjct: 142 DDKPKIEEEKAEKDQEPEESETKLSNG 168
Score = 28.5 bits (64), Expect = 0.69
Identities = 10/25 (40%), Positives = 15/25 (60%)
Query: 2 GKREEEEEKEEEEKEEEEEEEEEEE 26
K + EEEK E+++E EE E +
Sbjct: 143 DKPKIEEEKAEKDQEPEESETKLSN 167
Score = 27.7 bits (62), Expect = 1.2
Identities = 7/26 (26%), Positives = 16/26 (61%)
Query: 25 EEEEDEEEEEEDEEEEEEEEEEEEEE 50
+++ EEE+ ++++E EE E +
Sbjct: 142 DDKPKIEEEKAEKDQEPEESETKLSN 167
Score = 27.7 bits (62), Expect = 1.4
Identities = 10/26 (38%), Positives = 17/26 (65%)
Query: 6 EEEEKEEEEKEEEEEEEEEEEEEDEE 31
+++ K EEEK E+++E EE E +
Sbjct: 142 DDKPKIEEEKAEKDQEPEESETKLSN 167
Score = 27.3 bits (61), Expect = 1.4
Identities = 8/30 (26%), Positives = 17/30 (56%)
Query: 28 EDEEEEEEDEEEEEEEEEEEEEEEEEEELQ 57
+D+ + EE++ E+++E EE E +
Sbjct: 142 DDKPKIEEEKAEKDQEPEESETKLSNGPKV 171
Score = 27.3 bits (61), Expect = 1.6
Identities = 7/26 (26%), Positives = 17/26 (65%)
Query: 12 EEEKEEEEEEEEEEEEEDEEEEEEDE 37
+++ + EEE+ E+++E +E E +
Sbjct: 142 DDKPKIEEEKAEKDQEPEESETKLSN 167
Score = 27.3 bits (61), Expect = 1.6
Identities = 8/26 (30%), Positives = 17/26 (65%)
Query: 23 EEEEEEDEEEEEEDEEEEEEEEEEEE 48
+++ + +EE+ E+D+E EE E +
Sbjct: 142 DDKPKIEEEKAEKDQEPEESETKLSN 167
Score = 27.3 bits (61), Expect = 1.9
Identities = 8/25 (32%), Positives = 17/25 (68%)
Query: 11 EEEEKEEEEEEEEEEEEEDEEEEEE 35
+++ K EEE+ E+++E E+ E +
Sbjct: 142 DDKPKIEEEKAEKDQEPEESETKLS 166
Score = 26.9 bits (60), Expect = 2.1
Identities = 8/26 (30%), Positives = 17/26 (65%)
Query: 8 EEKEEEEKEEEEEEEEEEEEEDEEEE 33
++K + E+E+ E+++E EE E +
Sbjct: 142 DDKPKIEEEKAEKDQEPEESETKLSN 167
Score = 26.9 bits (60), Expect = 2.1
Identities = 8/24 (33%), Positives = 15/24 (62%)
Query: 5 EEEEEKEEEEKEEEEEEEEEEEEE 28
+ + E+E+ EK++E EE E +
Sbjct: 144 KPKIEEEKAEKDQEPEESETKLSN 167
Score = 26.9 bits (60), Expect = 2.2
Identities = 6/26 (23%), Positives = 17/26 (65%)
Query: 18 EEEEEEEEEEEDEEEEEEDEEEEEEE 43
+++ + EEE+ ++++E E+ E +
Sbjct: 142 DDKPKIEEEKAEKDQEPEESETKLSN 167
Score = 26.5 bits (59), Expect = 2.7
Identities = 8/26 (30%), Positives = 17/26 (65%)
Query: 5 EEEEEKEEEEKEEEEEEEEEEEEEDE 30
+++ + EEE+ E+++E EE E +
Sbjct: 142 DDKPKIEEEKAEKDQEPEESETKLSN 167
Score = 26.5 bits (59), Expect = 2.9
Identities = 7/26 (26%), Positives = 16/26 (61%)
Query: 22 EEEEEEEDEEEEEEDEEEEEEEEEEE 47
+++ + E+E+ E++ E EE E +
Sbjct: 142 DDKPKIEEEKAEKDQEPEESETKLSN 167
Score = 26.5 bits (59), Expect = 3.5
Identities = 8/26 (30%), Positives = 15/26 (57%)
Query: 27 EEDEEEEEEDEEEEEEEEEEEEEEEE 52
++ + EEE E+++E EE E +
Sbjct: 142 DDKPKIEEEKAEKDQEPEESETKLSN 167
Score = 26.2 bits (58), Expect = 3.8
Identities = 8/26 (30%), Positives = 17/26 (65%)
Query: 26 EEEDEEEEEEDEEEEEEEEEEEEEEE 51
+++ + EEE+ E+++E EE E +
Sbjct: 142 DDKPKIEEEKAEKDQEPEESETKLSN 167
Score = 26.2 bits (58), Expect = 4.0
Identities = 8/26 (30%), Positives = 17/26 (65%)
Query: 16 EEEEEEEEEEEEEDEEEEEEDEEEEE 41
+++ + EEE+ E+D+E EE + +
Sbjct: 142 DDKPKIEEEKAEKDQEPEESETKLSN 167
Score = 25.8 bits (57), Expect = 5.7
Identities = 7/26 (26%), Positives = 16/26 (61%)
Query: 7 EEEKEEEEKEEEEEEEEEEEEEDEEE 32
+++ + EE++ E+++E EE E
Sbjct: 142 DDKPKIEEEKAEKDQEPEESETKLSN 167
Score = 25.8 bits (57), Expect = 6.2
Identities = 7/26 (26%), Positives = 15/26 (57%)
Query: 14 EKEEEEEEEEEEEEEDEEEEEEDEEE 39
+ + + EEE+ E++++ EE E
Sbjct: 142 DDKPKIEEEKAEKDQEPEESETKLSN 167
Score = 25.8 bits (57), Expect = 6.2
Identities = 8/26 (30%), Positives = 16/26 (61%)
Query: 17 EEEEEEEEEEEEDEEEEEEDEEEEEE 42
+++ + EEE+ E ++E EE E +
Sbjct: 142 DDKPKIEEEKAEKDQEPEESETKLSN 167
Score = 25.8 bits (57), Expect = 6.2
Identities = 7/26 (26%), Positives = 17/26 (65%)
Query: 19 EEEEEEEEEEDEEEEEEDEEEEEEEE 44
+++ + EEE+ E+++E +E E +
Sbjct: 142 DDKPKIEEEKAEKDQEPEESETKLSN 167
Score = 25.8 bits (57), Expect = 6.2
Identities = 8/25 (32%), Positives = 16/25 (64%)
Query: 11 EEEEKEEEEEEEEEEEEEDEEEEEE 35
++ + EEE+ E+++E EE E +
Sbjct: 143 DKPKIEEEKAEKDQEPEESETKLSN 167
>gnl|CDD|218598 pfam05470, eIF-3c_N, Eukaryotic translation initiation factor 3
subunit 8 N-terminus. The largest of the mammalian
translation initiation factors, eIF3, consists of at
least eight subunits ranging in mass from 35 to 170 kDa.
eIF3 binds to the 40 S ribosome in an early step of
translation initiation and promotes the binding of
methionyl-tRNAi and mRNA.
Length = 593
Score = 29.8 bits (67), Expect = 0.26
Identities = 16/55 (29%), Positives = 30/55 (54%)
Query: 8 EEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEELQAGGHG 62
E+ E E++EEEE+E+++++ D+E+E+ED EE E + +
Sbjct: 133 EDPESEDEEEEEDEDDDDDGSDDEDEDEDGVGATEEVAASSESGVDRVKEDDEED 187
Score = 28.6 bits (64), Expect = 0.80
Identities = 16/51 (31%), Positives = 31/51 (60%)
Query: 6 EEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEEL 56
E E++EEEE E+++++ ++E+EDE+ EE E + +E++E
Sbjct: 136 ESEDEEEEEDEDDDDDGSDDEDEDEDGVGATEEVAASSESGVDRVKEDDEE 186
Score = 27.8 bits (62), Expect = 1.4
Identities = 16/56 (28%), Positives = 34/56 (60%)
Query: 4 REEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEELQAG 59
RE+ E ++EEE+E+E+++++ ++EDE+E+ EE E + +E+ +
Sbjct: 132 REDPESEDEEEEEDEDDDDDGSDDEDEDEDGVGATEEVAASSESGVDRVKEDDEED 187
Score = 26.7 bits (59), Expect = 3.6
Identities = 16/58 (27%), Positives = 33/58 (56%)
Query: 5 EEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEELQAGGHG 62
E+EEE+E+E+ +++ ++E+E+E+ EE E + +E++EE+E
Sbjct: 138 EDEEEEEDEDDDDDGSDDEDEDEDGVGATEEVAASSESGVDRVKEDDEEDEDADLSKK 195
>gnl|CDD|236766 PRK10811, rne, ribonuclease E; Reviewed.
Length = 1068
Score = 30.0 bits (68), Expect = 0.26
Identities = 11/52 (21%), Positives = 29/52 (55%)
Query: 3 KREEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEE 54
K ++E+++ + E + +E+ + ++E + EE+ +E E+EE ++
Sbjct: 664 KARTQDEQQQAPRRERQRRRNDEKRQAQQEAKALNVEEQSVQETEQEERVQQ 715
Score = 30.0 bits (68), Expect = 0.27
Identities = 11/54 (20%), Positives = 16/54 (29%)
Query: 5 EEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEELQA 58
E E +++ + EE E E E E + E E E
Sbjct: 945 HAEPVVEPQDETADIEEAAETAEVVVAEPEVVAQPAAPVVAEVAAEVETVTAVE 998
Score = 29.6 bits (67), Expect = 0.35
Identities = 12/51 (23%), Positives = 18/51 (35%)
Query: 5 EEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEE 55
+E E E E ++E + EE + E E E + E E
Sbjct: 940 QEVAEHAEPVVEPQDETADIEEAAETAEVVVAEPEVVAQPAAPVVAEVAAE 990
Score = 29.6 bits (67), Expect = 0.37
Identities = 13/51 (25%), Positives = 16/51 (31%)
Query: 5 EEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEE 55
E E E + E + EE E E E E + E E E
Sbjct: 944 EHAEPVVEPQDETADIEEAAETAEVVVAEPEVVAQPAAPVVAEVAAEVETV 994
Score = 29.2 bits (66), Expect = 0.45
Identities = 12/50 (24%), Positives = 17/50 (34%)
Query: 6 EEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEE 55
+E E E E ++E + EE E E E E + E
Sbjct: 939 AQEVAEHAEPVVEPQDETADIEEAAETAEVVVAEPEVVAQPAAPVVAEVA 988
Score = 28.9 bits (65), Expect = 0.73
Identities = 12/50 (24%), Positives = 15/50 (30%)
Query: 6 EEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEE 55
E + E + EE E E E E + E E E E
Sbjct: 950 VEPQDETADIEEAAETAEVVVAEPEVVAQPAAPVVAEVAAEVETVTAVEP 999
Score = 28.5 bits (64), Expect = 0.88
Identities = 12/54 (22%), Positives = 27/54 (50%)
Query: 5 EEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEELQA 58
E+ ++E+++ E + +E + ++E + EE+ +E E+EE Q
Sbjct: 663 EKARTQDEQQQAPRRERQRRRNDEKRQAQQEAKALNVEEQSVQETEQEERVQQV 716
Score = 27.7 bits (62), Expect = 1.4
Identities = 11/54 (20%), Positives = 17/54 (31%)
Query: 5 EEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEELQA 58
+E + E E ++E + EE E E E E + E
Sbjct: 939 AQEVAEHAEPVVEPQDETADIEEAAETAEVVVAEPEVVAQPAAPVVAEVAAEVE 992
Score = 27.7 bits (62), Expect = 1.5
Identities = 12/52 (23%), Positives = 17/52 (32%)
Query: 7 EEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEELQA 58
E + E ++E + EE E E E E + E E E
Sbjct: 944 EHAEPVVEPQDETADIEEAAETAEVVVAEPEVVAQPAAPVVAEVAAEVETVT 995
Score = 27.3 bits (61), Expect = 2.3
Identities = 12/51 (23%), Positives = 16/51 (31%)
Query: 5 EEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEE 55
++E + EE E E E E + E E E E E
Sbjct: 952 PQDETADIEEAAETAEVVVAEPEVVAQPAAPVVAEVAAEVETVTAVEPEVA 1002
Score = 26.9 bits (60), Expect = 3.0
Identities = 12/51 (23%), Positives = 17/51 (33%)
Query: 5 EEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEE 55
E ++E + E+ E E E E + E E E E E
Sbjct: 951 EPQDETADIEEAAETAEVVVAEPEVVAQPAAPVVAEVAAEVETVTAVEPEV 1001
Score = 26.5 bits (59), Expect = 3.4
Identities = 11/54 (20%), Positives = 14/54 (25%)
Query: 5 EEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEELQA 58
+E + EE + E E E E E E E E
Sbjct: 954 DETADIEEAAETAEVVVAEPEVVAQPAAPVVAEVAAEVETVTAVEPEVAPAQVP 1007
Score = 25.8 bits (57), Expect = 6.8
Identities = 12/49 (24%), Positives = 14/49 (28%)
Query: 5 EEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEE 53
EE E E E E + E E E E E + E
Sbjct: 960 EEAAETAEVVVAEPEVVAQPAAPVVAEVAAEVETVTAVEPEVAPAQVPE 1008
Score = 25.8 bits (57), Expect = 8.2
Identities = 10/50 (20%), Positives = 25/50 (50%)
Query: 4 REEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEE 53
RE E +EE + + +++ E + ++ E E+ ++E+++ E
Sbjct: 630 REGRENREENRRNRRQAQQQTAETRESQQAEVTEKARTQDEQQQAPRRER 679
>gnl|CDD|214923 smart00937, PCRF, This domain is found in peptide chain release
factors.
Length = 116
Score = 29.0 bits (66), Expect = 0.27
Identities = 20/37 (54%), Positives = 21/37 (56%)
Query: 22 EEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEELQA 58
E EEEED+E E EEE EE E E EEE EE
Sbjct: 1 ELLEEEEDDEMRELAEEELEELEAELEEELEELLKLL 37
Score = 25.5 bits (57), Expect = 4.9
Identities = 18/37 (48%), Positives = 23/37 (62%)
Query: 20 EEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEEL 56
E EEEE+++ E E+E EE E E EEE EE + L
Sbjct: 1 ELLEEEEDDEMRELAEEELEELEAELEEELEELLKLL 37
Score = 25.5 bits (57), Expect = 5.7
Identities = 18/33 (54%), Positives = 21/33 (63%)
Query: 18 EEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEE 50
EEEE++E E EEE EE E E EEE EE +
Sbjct: 4 EEEEDDEMRELAEEELEELEAELEEELEELLKL 36
>gnl|CDD|220371 pfam09736, Bud13, Pre-mRNA-splicing factor of RES complex. This
entry is characterized by proteins with alternating
conserved and low-complexity regions. Bud13 together
with Snu17p and a newly identified factor,
Pml1p/Ylr016c, form a novel trimeric complex. called
The RES complex, pre-mRNA retention and splicing
complex. Subunits of this complex are not essential for
viability of yeasts but they are required for efficient
splicing in vitro and in vivo. Furthermore,
inactivation of this complex causes pre-mRNA leakage
from the nucleus. Bud13 contains a unique,
phylogenetically conserved C-terminal region of unknown
function.
Length = 141
Score = 29.2 bits (66), Expect = 0.27
Identities = 21/55 (38%), Positives = 36/55 (65%)
Query: 2 GKREEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEEL 56
G+ + EEK EE++ E+EE+E +EE+E E + ++EE E+ EE E+ + + L
Sbjct: 9 GRIIDIEEKREEKEREKEEKERKEEKEKEWGKGLVQKEEREKRLEELEKAKNKPL 63
Score = 27.7 bits (62), Expect = 1.1
Identities = 18/47 (38%), Positives = 32/47 (68%)
Query: 12 EEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEELQA 58
EE++EE+E E+EE+E ++E+E+E + ++EE E+ EE E+
Sbjct: 15 EEKREEKEREKEEKERKEEKEKEWGKGLVQKEEREKRLEELEKAKNK 61
>gnl|CDD|235668 PRK06007, fliF, flagellar MS-ring protein; Reviewed.
Length = 542
Score = 29.8 bits (68), Expect = 0.27
Identities = 19/51 (37%), Positives = 30/51 (58%)
Query: 5 EEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEE 55
EE +E+EE E E ++EE E+E+ EEE + E+ + E +E+ EE
Sbjct: 479 EEAALEEDEEAALEVELSDDEELEEEKAEEELKYEDLLKRLRELAKEDPEE 529
Score = 27.9 bits (63), Expect = 1.1
Identities = 18/51 (35%), Positives = 28/51 (54%)
Query: 4 REEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEE 54
E E++EE E E ++EE EE++ EEE E+ + E +E+ EE
Sbjct: 479 EEAALEEDEEAALEVELSDDEELEEEKAEEELKYEDLLKRLRELAKEDPEE 529
>gnl|CDD|178493 PLN02905, PLN02905, beta-amylase.
Length = 702
Score = 30.0 bits (67), Expect = 0.29
Identities = 15/58 (25%), Positives = 28/58 (48%)
Query: 26 EEEDEEEEEEDEEEEEEEEEEEEEEEEEEELQAGGHGIAICQCKSAKIVTTKTIPMQV 83
EE+DEEE + D +EE++ + E+ G A+ + + + ++I QV
Sbjct: 13 EEDDEEEMDMDVKEEDDGDRRNREKHIPVTGMVSVDGAAVSSSGNDEFMHQQSIQEQV 70
Score = 28.4 bits (63), Expect = 1.0
Identities = 9/25 (36%), Positives = 17/25 (68%)
Query: 19 EEEEEEEEEEDEEEEEEDEEEEEEE 43
EE++EEE + D +EE++ + E+
Sbjct: 13 EEDDEEEMDMDVKEEDDGDRRNREK 37
Score = 27.6 bits (61), Expect = 1.6
Identities = 10/25 (40%), Positives = 17/25 (68%)
Query: 21 EEEEEEEEDEEEEEEDEEEEEEEEE 45
EE++EEE D + +EED+ + E+
Sbjct: 13 EEDDEEEMDMDVKEEDDGDRRNREK 37
Score = 26.5 bits (58), Expect = 3.6
Identities = 9/25 (36%), Positives = 17/25 (68%)
Query: 18 EEEEEEEEEEEDEEEEEEDEEEEEE 42
EE++EEE + + +EE++ D E+
Sbjct: 13 EEDDEEEMDMDVKEEDDGDRRNREK 37
Score = 26.5 bits (58), Expect = 4.1
Identities = 9/25 (36%), Positives = 17/25 (68%)
Query: 20 EEEEEEEEEDEEEEEEDEEEEEEEE 44
EE++EEE + + +EE+D + E+
Sbjct: 13 EEDDEEEMDMDVKEEDDGDRRNREK 37
Score = 25.7 bits (56), Expect = 6.8
Identities = 8/25 (32%), Positives = 16/25 (64%)
Query: 13 EEKEEEEEEEEEEEEEDEEEEEEDE 37
EE +EEE + + +EE+D + ++
Sbjct: 13 EEDDEEEMDMDVKEEDDGDRRNREK 37
Score = 25.7 bits (56), Expect = 7.1
Identities = 8/25 (32%), Positives = 17/25 (68%)
Query: 8 EEKEEEEKEEEEEEEEEEEEEDEEE 32
EE +EEE + + +EE++ + + E+
Sbjct: 13 EEDDEEEMDMDVKEEDDGDRRNREK 37
Score = 25.7 bits (56), Expect = 7.3
Identities = 8/25 (32%), Positives = 16/25 (64%)
Query: 17 EEEEEEEEEEEEDEEEEEEDEEEEE 41
EE++EEE + + EE++ + E+
Sbjct: 13 EEDDEEEMDMDVKEEDDGDRRNREK 37
>gnl|CDD|237875 PRK14974, PRK14974, cell division protein FtsY; Provisional.
Length = 336
Score = 29.6 bits (67), Expect = 0.31
Identities = 25/50 (50%), Positives = 36/50 (72%)
Query: 7 EEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEEL 56
EE+ EEEE+EE E EEEEEEEDEEE++E ++ + E +E++ E+L
Sbjct: 17 EEKIEEEEEEEAPEAEEEEEEEDEEEKKEKPGFFDKAKITEIKEKDIEDL 66
Score = 29.2 bits (66), Expect = 0.45
Identities = 22/32 (68%), Positives = 27/32 (84%)
Query: 14 EKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEE 45
EK EE+ EEEEEEE E EEEE+EE+EEE++E
Sbjct: 14 EKVEEKIEEEEEEEAPEAEEEEEEEDEEEKKE 45
Score = 28.4 bits (64), Expect = 0.73
Identities = 25/57 (43%), Positives = 41/57 (71%), Gaps = 2/57 (3%)
Query: 3 KREEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEE--EELQ 57
K EE+ E+EEEE+ E EEEEEEE+E+E++E+ ++ + E +E++ E+ EEL+
Sbjct: 15 KVEEKIEEEEEEEAPEAEEEEEEEDEEEKKEKPGFFDKAKITEIKEKDIEDLLEELE 71
Score = 26.1 bits (58), Expect = 5.7
Identities = 23/56 (41%), Positives = 38/56 (67%)
Query: 3 KREEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEELQA 58
+ EEEE E EE+EEEE+EEE++E+ ++ + E +E++ E+ EE E E L++
Sbjct: 22 EEEEEEAPEAEEEEEEEDEEEKKEKPGFFDKAKITEIKEKDIEDLLEELELELLES 77
Score = 25.7 bits (57), Expect = 6.7
Identities = 19/32 (59%), Positives = 26/32 (81%)
Query: 28 EDEEEEEEDEEEEEEEEEEEEEEEEEEELQAG 59
E++ EEEE+EE E EEEEEEE+EEE++ + G
Sbjct: 17 EEKIEEEEEEEAPEAEEEEEEEDEEEKKEKPG 48
>gnl|CDD|219563 pfam07767, Nop53, Nop53 (60S ribosomal biogenesis). This nucleolar
family of proteins are involved in 60S ribosomal
biogenesis. They are specifically involved in the
processing beyond the 27S stage of 25S rRNA maturation.
This family contains sequences that bear similarity to
the glioma tumour suppressor candidate region gene 2
protein (p60). This protein has been found to interact
with herpes simplex type 1 regulatory proteins.
Length = 387
Score = 29.7 bits (67), Expect = 0.31
Identities = 17/53 (32%), Positives = 29/53 (54%)
Query: 3 KREEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEE 55
K+ +E E+ EE+K E+ E +E E E+ +++ EEE ++E E E
Sbjct: 211 KKRQELERVEEKKLEKMAPEASRLDEMSEGLLEESDDDGEEESDDESAWEGFE 263
Score = 29.3 bits (66), Expect = 0.43
Identities = 18/53 (33%), Positives = 28/53 (52%)
Query: 3 KREEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEE 55
KR+E E EE++ E+ E +E E EE +++ EEE ++E E E
Sbjct: 212 KRQELERVEEKKLEKMAPEASRLDEMSEGLLEESDDDGEEESDDESAWEGFES 264
>gnl|CDD|215214 PLN02381, PLN02381, valyl-tRNA synthetase.
Length = 1066
Score = 29.9 bits (67), Expect = 0.33
Identities = 15/61 (24%), Positives = 32/61 (52%)
Query: 12 EEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEELQAGGHGIAICQCKSA 71
E E E++ EEE E + ++EE+ E+E ++ + ++E + + + Q G + +
Sbjct: 5 ESEAEKKILTEEELERKKKKEEKAKEKELKKLKAAQKEAKAKLQAQQASDGTNVPKKSEK 64
Query: 72 K 72
K
Sbjct: 65 K 65
Score = 26.8 bits (59), Expect = 3.4
Identities = 11/53 (20%), Positives = 31/53 (58%)
Query: 3 KREEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEE 55
K++EE+ KE+E K+ + ++E + + ++ + ++ E++ + + E+E
Sbjct: 22 KKKEEKAKEKELKKLKAAQKEAKAKLQAQQASDGTNVPKKSEKKSRKRDVEDE 74
Score = 26.4 bits (58), Expect = 4.8
Identities = 13/54 (24%), Positives = 30/54 (55%)
Query: 11 EEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEELQAGGHGIA 64
E EK+ EEE E +++ EE+ +E E ++ + ++E + + + + + G +
Sbjct: 6 SEAEKKILTEEELERKKKKEEKAKEKELKKLKAAQKEAKAKLQAQQASDGTNVP 59
Score = 25.6 bits (56), Expect = 8.7
Identities = 13/51 (25%), Positives = 32/51 (62%)
Query: 2 GKREEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEE 52
G R E E +++ EEE E ++++EE+ +E+E + + ++E + + + ++
Sbjct: 1 GSRTESEAEKKILTEEELERKKKKEEKAKEKELKKLKAAQKEAKAKLQAQQ 51
>gnl|CDD|133433 cd05297, GH4_alpha_glucosidase_galactosidase, Glycoside Hydrolases
Family 4; Alpha-glucosidases and alpha-galactosidases.
Glucosidases cleave glycosidic bonds to release glucose
from oligosaccharides. Alpha-glucosidases and
alpha-galactosidases release alpha-D-glucose and
alpha-D-galactose, respectively, via the hydrolysis of
alpha-glycopyranoside bonds. Some bacteria
simultaneously translocate and phosphorylate
disaccharides via the phosphoenolpyruvate-dependent
phosphotransferase system (PEP-PTS). After
translocation, these phospho-disaccharides may be
hydrolyzed by the GH4 glycoside hydrolases such as the
alpha-glucosidases. Other organsisms (such as archaea
and Thermotoga maritima) lack the PEP-PTS system, but
have several enzymes normally associated with the
PEP-PTS operon. Alpha-glucosidases and
alpha-galactosidases are part of the NAD(P)-binding
Rossmann fold superfamily, which includes a wide variety
of protein families including the NAD(P)-binding domains
of alcohol dehydrogenases, tyrosine-dependent
oxidoreductases, glyceraldehyde-3-phosphate
dehydrogenases, formate/glycerate dehydrogenases,
siroheme synthases, 6-phosphogluconate dehydrogenases,
aminoacid dehydrogenases, repressor rex, and NAD-binding
potassium channel domains, among others.
Length = 423
Score = 29.5 bits (67), Expect = 0.34
Identities = 16/57 (28%), Positives = 27/57 (47%), Gaps = 1/57 (1%)
Query: 10 KEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEELQAGG-HGIAI 65
KE ++ E E+E DEE+ E EE + E ++EE + ++ G + I
Sbjct: 260 KETKKIWYGEFNEDEYGGRDEEQGWEWYEERLKLILAEIDKEELDPVKRSGEYASPI 316
Score = 29.1 bits (66), Expect = 0.45
Identities = 12/53 (22%), Positives = 23/53 (43%)
Query: 3 KREEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEE 55
K ++ E ++E +EE+ E EE + E ++EE + + E
Sbjct: 260 KETKKIWYGEFNEDEYGGRDEEQGWEWYEERLKLILAEIDKEELDPVKRSGEY 312
>gnl|CDD|219355 pfam07267, Nucleo_P87, Nucleopolyhedrovirus capsid protein P87.
This family consists of several Nucleopolyhedrovirus
capsid protein P87 sequences. P87 is expressed late in
infection and concentrated in infected cell nuclei.
Length = 606
Score = 29.5 bits (66), Expect = 0.35
Identities = 11/32 (34%), Positives = 20/32 (62%)
Query: 18 EEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEE 49
E +E+E+D +E+E D E+E + EE++
Sbjct: 366 LPEYSSDEDEDDSDEDEVDYEKERKRRREEDK 397
Score = 27.9 bits (62), Expect = 1.2
Identities = 10/40 (25%), Positives = 22/40 (55%)
Query: 3 KREEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEE 42
++ E +E+E++ +E+E D E+E + EE++
Sbjct: 358 RKRRRVPPLPEYSSDEDEDDSDEDEVDYEKERKRRREEDK 397
Score = 27.5 bits (61), Expect = 1.9
Identities = 10/31 (32%), Positives = 19/31 (61%)
Query: 25 EEEEDEEEEEEDEEEEEEEEEEEEEEEEEEE 55
E +E+E+D +E+E + E+E + EE+
Sbjct: 366 LPEYSSDEDEDDSDEDEVDYEKERKRRREED 396
Score = 27.2 bits (60), Expect = 2.1
Identities = 9/32 (28%), Positives = 20/32 (62%)
Query: 17 EEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEE 48
E +E+E++ +E+E + E+E + EE++
Sbjct: 366 LPEYSSDEDEDDSDEDEVDYEKERKRRREEDK 397
Score = 27.2 bits (60), Expect = 2.5
Identities = 11/32 (34%), Positives = 20/32 (62%)
Query: 23 EEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEE 54
E DE+E++ DE+E + E+E + EE++
Sbjct: 366 LPEYSSDEDEDDSDEDEVDYEKERKRRREEDK 397
Score = 27.2 bits (60), Expect = 2.6
Identities = 11/32 (34%), Positives = 20/32 (62%)
Query: 21 EEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEE 52
E +EDE++ +EDE + E+E + EE++
Sbjct: 366 LPEYSSDEDEDDSDEDEVDYEKERKRRREEDK 397
Score = 26.8 bits (59), Expect = 3.6
Identities = 10/32 (31%), Positives = 20/32 (62%)
Query: 19 EEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEE 50
E +E+ED+ +E+E + E+E + EE++
Sbjct: 366 LPEYSSDEDEDDSDEDEVDYEKERKRRREEDK 397
Score = 26.0 bits (57), Expect = 6.1
Identities = 9/33 (27%), Positives = 20/33 (60%)
Query: 15 KEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEE 47
E +E+E++ DE+E + ++E + EE++
Sbjct: 365 PLPEYSSDEDEDDSDEDEVDYEKERKRRREEDK 397
Score = 25.6 bits (56), Expect = 8.9
Identities = 9/39 (23%), Positives = 23/39 (58%)
Query: 20 EEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEELQA 58
E +E++++ +E++ + E+E + EE++ L+A
Sbjct: 366 LPEYSSDEDEDDSDEDEVDYEKERKRRREEDKNFLRLKA 404
Score = 25.2 bits (55), Expect = 9.4
Identities = 9/32 (28%), Positives = 20/32 (62%)
Query: 14 EKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEE 45
E +E+E++ +EDE + E++ + EE++
Sbjct: 366 LPEYSSDEDEDDSDEDEVDYEKERKRRREEDK 397
>gnl|CDD|235302 PRK04456, PRK04456, acetyl-CoA decarbonylase/synthase complex
subunit beta; Reviewed.
Length = 463
Score = 29.3 bits (66), Expect = 0.38
Identities = 27/55 (49%), Positives = 31/55 (56%), Gaps = 2/55 (3%)
Query: 25 EEEEDEEEEEEDEEEEEEEEEEEEEEEEEEELQAGGHGIAICQCKSAKIVTTKTI 79
EE+EEEEEE+EEEEE E E +L A G GI I K+AKI K I
Sbjct: 403 AAEEEEEEEEEEEEEEEPVAEVMMMPAPEMQLPASG-GIKII-LKNAKIYAEKVI 455
Score = 27.0 bits (60), Expect = 2.4
Identities = 15/26 (57%), Positives = 18/26 (69%)
Query: 3 KREEEEEKEEEEKEEEEEEEEEEEEE 28
+R EE+EEEE+EEEEEEE E
Sbjct: 400 ERWAAEEEEEEEEEEEEEEEPVAEVM 425
Score = 26.2 bits (58), Expect = 4.2
Identities = 15/23 (65%), Positives = 16/23 (69%)
Query: 10 KEEEEKEEEEEEEEEEEEEDEEE 32
EEE+EEEEEEEEEEE E
Sbjct: 403 AAEEEEEEEEEEEEEEEPVAEVM 425
Score = 25.4 bits (56), Expect = 8.0
Identities = 14/23 (60%), Positives = 16/23 (69%)
Query: 9 EKEEEEKEEEEEEEEEEEEEDEE 31
EEEE+EEEEEEEEEE +
Sbjct: 403 AAEEEEEEEEEEEEEEEPVAEVM 425
>gnl|CDD|221342 pfam11960, DUF3474, Domain of unknown function (DUF3474). This
presumed domain is functionally uncharacterized. This
domain is found in bacteria and eukaryotes. This domain
is typically between 126 to 140 amino acids in length.
This domain is found associated with pfam00487.
Length = 135
Score = 28.9 bits (65), Expect = 0.40
Identities = 13/20 (65%), Positives = 14/20 (70%)
Query: 40 EEEEEEEEEEEEEEEELQAG 59
EEEEEE +EEEEEE G
Sbjct: 74 EEEEEENGNDEEEEEEFDPG 93
Score = 28.5 bits (64), Expect = 0.51
Identities = 13/16 (81%), Positives = 13/16 (81%)
Query: 20 EEEEEEEEEDEEEEEE 35
EEEEEE DEEEEEE
Sbjct: 74 EEEEEENGNDEEEEEE 89
Score = 28.1 bits (63), Expect = 0.75
Identities = 12/16 (75%), Positives = 13/16 (81%)
Query: 37 EEEEEEEEEEEEEEEE 52
EEEEEE +EEEEEE
Sbjct: 74 EEEEEENGNDEEEEEE 89
Score = 28.1 bits (63), Expect = 0.75
Identities = 12/16 (75%), Positives = 13/16 (81%)
Query: 38 EEEEEEEEEEEEEEEE 53
EEEEEE +EEEEEE
Sbjct: 74 EEEEEENGNDEEEEEE 89
Score = 28.1 bits (63), Expect = 0.75
Identities = 12/16 (75%), Positives = 13/16 (81%)
Query: 39 EEEEEEEEEEEEEEEE 54
EEEEEE +EEEEEE
Sbjct: 74 EEEEEENGNDEEEEEE 89
Score = 28.1 bits (63), Expect = 0.77
Identities = 12/16 (75%), Positives = 14/16 (87%)
Query: 30 EEEEEEDEEEEEEEEE 45
EEEEEE+ +EEEEEE
Sbjct: 74 EEEEEENGNDEEEEEE 89
Score = 27.3 bits (61), Expect = 1.2
Identities = 11/16 (68%), Positives = 13/16 (81%)
Query: 31 EEEEEDEEEEEEEEEE 46
EEEEE+ +EEEEEE
Sbjct: 74 EEEEEENGNDEEEEEE 89
Score = 27.3 bits (61), Expect = 1.2
Identities = 11/16 (68%), Positives = 13/16 (81%)
Query: 32 EEEEDEEEEEEEEEEE 47
EEEE+E +EEEEEE
Sbjct: 74 EEEEEENGNDEEEEEE 89
Score = 27.3 bits (61), Expect = 1.2
Identities = 12/18 (66%), Positives = 14/18 (77%)
Query: 19 EEEEEEEEEEDEEEEEED 36
EEEEEE ++EEEEE D
Sbjct: 74 EEEEEENGNDEEEEEEFD 91
Score = 27.3 bits (61), Expect = 1.3
Identities = 11/16 (68%), Positives = 13/16 (81%)
Query: 17 EEEEEEEEEEEEDEEE 32
EEEEEE +EE+EEE
Sbjct: 74 EEEEEENGNDEEEEEE 89
Score = 27.3 bits (61), Expect = 1.5
Identities = 11/16 (68%), Positives = 13/16 (81%)
Query: 16 EEEEEEEEEEEEEDEE 31
EEEEEE +EEE+EE
Sbjct: 74 EEEEEENGNDEEEEEE 89
Score = 27.3 bits (61), Expect = 1.6
Identities = 11/16 (68%), Positives = 14/16 (87%)
Query: 23 EEEEEEDEEEEEEDEE 38
EEEEEE+ +EEE+EE
Sbjct: 74 EEEEEENGNDEEEEEE 89
Score = 26.9 bits (60), Expect = 1.6
Identities = 11/16 (68%), Positives = 13/16 (81%)
Query: 36 DEEEEEEEEEEEEEEE 51
+EEEEE +EEEEEE
Sbjct: 74 EEEEEENGNDEEEEEE 89
Score = 26.9 bits (60), Expect = 1.7
Identities = 11/16 (68%), Positives = 13/16 (81%)
Query: 33 EEEDEEEEEEEEEEEE 48
EEE+EE +EEEEEE
Sbjct: 74 EEEEEENGNDEEEEEE 89
Score = 26.9 bits (60), Expect = 1.8
Identities = 12/16 (75%), Positives = 13/16 (81%)
Query: 27 EEDEEEEEEDEEEEEE 42
EE+EEE DEEEEEE
Sbjct: 74 EEEEEENGNDEEEEEE 89
Score = 26.9 bits (60), Expect = 2.1
Identities = 10/16 (62%), Positives = 13/16 (81%)
Query: 24 EEEEEDEEEEEEDEEE 39
EEEEE+ +EE+EEE
Sbjct: 74 EEEEEENGNDEEEEEE 89
Score = 26.5 bits (59), Expect = 2.2
Identities = 11/16 (68%), Positives = 13/16 (81%)
Query: 18 EEEEEEEEEEEDEEEE 33
EEEEEE +E+EEEE
Sbjct: 74 EEEEEENGNDEEEEEE 89
Score = 26.5 bits (59), Expect = 2.6
Identities = 11/16 (68%), Positives = 13/16 (81%)
Query: 34 EEDEEEEEEEEEEEEE 49
EE+EEE +EEEEEE
Sbjct: 74 EEEEEENGNDEEEEEE 89
Score = 26.5 bits (59), Expect = 2.9
Identities = 12/18 (66%), Positives = 14/18 (77%)
Query: 12 EEEKEEEEEEEEEEEEED 29
EEE+EE +EEEEEE D
Sbjct: 74 EEEEEENGNDEEEEEEFD 91
Score = 26.2 bits (58), Expect = 3.5
Identities = 11/16 (68%), Positives = 13/16 (81%)
Query: 35 EDEEEEEEEEEEEEEE 50
E+EEEE +EEEEEE
Sbjct: 74 EEEEEENGNDEEEEEE 89
Score = 26.2 bits (58), Expect = 3.5
Identities = 10/16 (62%), Positives = 13/16 (81%)
Query: 25 EEEEDEEEEEEDEEEE 40
EEEE+E +E+EEEE
Sbjct: 74 EEEEEENGNDEEEEEE 89
Score = 25.8 bits (57), Expect = 4.0
Identities = 11/16 (68%), Positives = 13/16 (81%)
Query: 11 EEEEKEEEEEEEEEEE 26
EEEE+E +EEEEEE
Sbjct: 74 EEEEEENGNDEEEEEE 89
>gnl|CDD|222613 pfam14235, DUF4337, Domain of unknown function (DUF4337). This
family of proteins is functionally uncharacterized. This
family of proteins is found in bacteria. Proteins in
this family are typically between 187 and 201 amino
acids in length. There is a single completely conserved
residue Q that may be functionally important.
Length = 158
Score = 29.1 bits (66), Expect = 0.41
Identities = 12/55 (21%), Positives = 21/55 (38%)
Query: 11 EEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEELQAGGHGIAI 65
E E E + + +E+ E +E E + +E E E + H A+
Sbjct: 62 ELEAAAPRAELQAKIARYKKEKARYRSEAKELEAKAKEAEAESDHALHQHHRFAL 116
Score = 26.8 bits (60), Expect = 2.3
Identities = 8/34 (23%), Positives = 17/34 (50%)
Query: 5 EEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEE 38
+ + + ++EK E +E E + +E E E +
Sbjct: 73 QAKIARYKKEKARYRSEAKELEAKAKEAEAESDH 106
Score = 25.6 bits (57), Expect = 5.2
Identities = 7/34 (20%), Positives = 16/34 (47%)
Query: 9 EKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEE 42
+ + ++E+ E +E E + +E E E +
Sbjct: 73 QAKIARYKKEKARYRSEAKELEAKAKEAEAESDH 106
>gnl|CDD|220284 pfam09538, FYDLN_acid, Protein of unknown function (FYDLN_acid).
Members of this family are bacterial proteins with a
conserved motif [KR]FYDLN, sometimes flanked by a pair
of CXXC motifs, followed by a long region of low
complexity sequence in which roughly half the residues
are Asp and Glu, including multiple runs of five or more
acidic residues. The function of members of this family
is unknown.
Length = 104
Score = 28.4 bits (64), Expect = 0.42
Identities = 8/53 (15%), Positives = 38/53 (71%)
Query: 3 KREEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEE 55
+++E EE+E + +++++++++D+ + +D++ + ++++++ E++++E
Sbjct: 52 DAAKKDEDEEDEDDVVLDDDDDDDDDDDLPDLDDDDVDLDDDDDDFLEDDDDE 104
Score = 27.7 bits (62), Expect = 0.88
Identities = 9/54 (16%), Positives = 37/54 (68%)
Query: 3 KREEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEEL 56
R + E+ K++E+EE+E++ D++++++D+++ + ++++ + +++++
Sbjct: 43 SRAPAADAEDAAKKDEDEEDEDDVVLDDDDDDDDDDDLPDLDDDDVDLDDDDDD 96
Score = 27.3 bits (61), Expect = 1.1
Identities = 7/53 (13%), Positives = 34/53 (64%)
Query: 4 REEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEEL 56
E + + E+ +++E+EE++++ +D+++++++++ + ++++ +L
Sbjct: 38 PEVAKSRAPAADAEDAAKKDEDEEDEDDVVLDDDDDDDDDDDLPDLDDDDVDL 90
Score = 25.3 bits (56), Expect = 5.0
Identities = 10/50 (20%), Positives = 30/50 (60%)
Query: 6 EEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEE 55
EE E + + E+ ++DE+EE+ED+ +++++++++++ +
Sbjct: 34 EEVPPEVAKSRAPAADAEDAAKKDEDEEDEDDVVLDDDDDDDDDDDLPDL 83
Score = 24.6 bits (54), Expect = 10.0
Identities = 7/51 (13%), Positives = 32/51 (62%)
Query: 5 EEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEE 55
EE + + + + E+ +++++EE+E+D +++++++++++ + +
Sbjct: 34 EEVPPEVAKSRAPAADAEDAAKKDEDEEDEDDVVLDDDDDDDDDDDLPDLD 84
>gnl|CDD|217059 pfam02480, Herpes_gE, Alphaherpesvirus glycoprotein E.
Glycoprotein E (gE) of Alphaherpesvirus forms a complex
with glycoprotein I (gI) (pfam01688), functioning as an
immunoglobulin G (IgG) Fc binding protein. gE is
involved in virus spread but is not essential for
propagation.
Length = 437
Score = 29.3 bits (66), Expect = 0.42
Identities = 8/33 (24%), Positives = 16/33 (48%)
Query: 27 EEDEEEEEEDEEEEEEEEEEEEEEEEEEELQAG 59
E E+ D E ++EE + + + E ++G
Sbjct: 401 NELFEDVSSDSESDDEEFDSDSDREPSGPSKSG 433
>gnl|CDD|234456 TIGR04074, bacter_Hen1, 3' terminal RNA ribose
2'-O-methyltransferase Hen1. Members of this protein
family are bacterial Hen1, a 3' terminal RNA ribose
2'-O-methyltransferase that acts in bacterial RNA
repair. All members of the seed alignment belong to a
cassette with the RNA repair enzyme polynucleotide
kinase-phosphatase (Pnkp). Chemically similar Hen1 in
eukaryotes acts instead on small regulatory RNAs
[Transcription, RNA processing, Protein synthesis, tRNA
and rRNA base modification].
Length = 462
Score = 29.2 bits (66), Expect = 0.43
Identities = 11/22 (50%), Positives = 14/22 (63%)
Query: 25 EEEEDEEEEEEDEEEEEEEEEE 46
E +E E EE E EE +EE E+
Sbjct: 241 EADEAEPEEAETEEAQEEAAEK 262
Score = 29.2 bits (66), Expect = 0.47
Identities = 11/22 (50%), Positives = 14/22 (63%)
Query: 32 EEEEDEEEEEEEEEEEEEEEEE 53
E +E E EE E EE +EE E+
Sbjct: 241 EADEAEPEEAETEEAQEEAAEK 262
Score = 28.4 bits (64), Expect = 0.83
Identities = 12/22 (54%), Positives = 14/22 (63%)
Query: 34 EEDEEEEEEEEEEEEEEEEEEE 55
E DE E EE E EE +EE E+
Sbjct: 241 EADEAEPEEAETEEAQEEAAEK 262
Score = 27.7 bits (62), Expect = 1.5
Identities = 10/22 (45%), Positives = 14/22 (63%)
Query: 33 EEEDEEEEEEEEEEEEEEEEEE 54
E ++ E EE E EE +EE E+
Sbjct: 241 EADEAEPEEAETEEAQEEAAEK 262
Score = 27.3 bits (61), Expect = 2.1
Identities = 10/22 (45%), Positives = 14/22 (63%)
Query: 31 EEEEEDEEEEEEEEEEEEEEEE 52
E +E + EE E EE +EE E+
Sbjct: 241 EADEAEPEEAETEEAQEEAAEK 262
Score = 27.3 bits (61), Expect = 2.3
Identities = 11/23 (47%), Positives = 14/23 (60%)
Query: 29 DEEEEEEDEEEEEEEEEEEEEEE 51
E +E E EE E EE +EE E+
Sbjct: 240 AEADEAEPEEAETEEAQEEAAEK 262
Score = 26.9 bits (60), Expect = 3.0
Identities = 9/22 (40%), Positives = 14/22 (63%)
Query: 24 EEEEEDEEEEEEDEEEEEEEEE 45
E +E + EE E +E +EE E+
Sbjct: 241 EADEAEPEEAETEEAQEEAAEK 262
Score = 26.9 bits (60), Expect = 3.2
Identities = 10/23 (43%), Positives = 13/23 (56%)
Query: 36 DEEEEEEEEEEEEEEEEEEELQA 58
E +E E EE E EE +EE +
Sbjct: 240 AEADEAEPEEAETEEAQEEAAEK 262
Score = 26.5 bits (59), Expect = 3.6
Identities = 12/22 (54%), Positives = 14/22 (63%)
Query: 27 EEDEEEEEEDEEEEEEEEEEEE 48
E DE E EE E EE +EE E+
Sbjct: 241 EADEAEPEEAETEEAQEEAAEK 262
Score = 26.5 bits (59), Expect = 3.6
Identities = 10/22 (45%), Positives = 14/22 (63%)
Query: 17 EEEEEEEEEEEEDEEEEEEDEE 38
E +E E EE E +E +EE E+
Sbjct: 241 EADEAEPEEAETEEAQEEAAEK 262
Score = 26.1 bits (58), Expect = 5.2
Identities = 11/23 (47%), Positives = 13/23 (56%)
Query: 14 EKEEEEEEEEEEEEEDEEEEEED 36
E +E E EE E EE EE E+
Sbjct: 241 EADEAEPEEAETEEAQEEAAEKP 263
Score = 26.1 bits (58), Expect = 5.8
Identities = 11/22 (50%), Positives = 14/22 (63%)
Query: 18 EEEEEEEEEEEDEEEEEEDEEE 39
E +E E EE E EE +EE E+
Sbjct: 241 EADEAEPEEAETEEAQEEAAEK 262
Score = 25.7 bits (57), Expect = 6.4
Identities = 9/22 (40%), Positives = 14/22 (63%)
Query: 26 EEEDEEEEEEDEEEEEEEEEEE 47
E ++ E EE + EE +EE E+
Sbjct: 241 EADEAEPEEAETEEAQEEAAEK 262
Score = 25.7 bits (57), Expect = 7.1
Identities = 11/22 (50%), Positives = 14/22 (63%)
Query: 11 EEEEKEEEEEEEEEEEEEDEEE 32
E +E E EE E EE +EE E+
Sbjct: 241 EADEAEPEEAETEEAQEEAAEK 262
Score = 25.7 bits (57), Expect = 7.3
Identities = 11/22 (50%), Positives = 14/22 (63%)
Query: 6 EEEEKEEEEKEEEEEEEEEEEE 27
E +E E EE E EE +EE E+
Sbjct: 241 EADEAEPEEAETEEAQEEAAEK 262
Score = 25.7 bits (57), Expect = 7.5
Identities = 10/22 (45%), Positives = 14/22 (63%)
Query: 28 EDEEEEEEDEEEEEEEEEEEEE 49
E +E E E+ E EE +EE E+
Sbjct: 241 EADEAEPEEAETEEAQEEAAEK 262
Score = 25.7 bits (57), Expect = 7.6
Identities = 10/22 (45%), Positives = 14/22 (63%)
Query: 23 EEEEEEDEEEEEEDEEEEEEEE 44
E +E E EE E E+ +EE E+
Sbjct: 241 EADEAEPEEAETEEAQEEAAEK 262
Score = 25.3 bits (56), Expect = 9.8
Identities = 10/22 (45%), Positives = 13/22 (59%)
Query: 21 EEEEEEEEDEEEEEEDEEEEEE 42
E +E E E+ E EE EE E+
Sbjct: 241 EADEAEPEEAETEEAQEEAAEK 262
>gnl|CDD|235562 PRK05687, fliH, flagellar assembly protein H; Validated.
Length = 246
Score = 29.1 bits (66), Expect = 0.44
Identities = 13/44 (29%), Positives = 16/44 (36%)
Query: 18 EEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEELQAGGH 61
E E E + EE EEE EEE E ++ H
Sbjct: 26 PPPEPPPPEPAAPPPEPPEPEEVPEEEAAPLTEEELEAIRQQAH 69
Score = 28.4 bits (64), Expect = 0.78
Identities = 17/56 (30%), Positives = 20/56 (35%)
Query: 6 EEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEELQAGGH 61
E E E E EE EEE EEE E ++ EE +A G
Sbjct: 26 PPPEPPPPEPAAPPPEPPEPEEVPEEEAAPLTEEELEAIRQQAHEEGFAAGKAEGR 81
Score = 26.4 bits (59), Expect = 3.4
Identities = 15/55 (27%), Positives = 18/55 (32%)
Query: 5 EEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEELQAG 59
E E E E EE +EE EEE E ++ EE G
Sbjct: 26 PPPEPPPPEPAAPPPEPPEPEEVPEEEAAPLTEEELEAIRQQAHEEGFAAGKAEG 80
Score = 26.0 bits (58), Expect = 5.0
Identities = 16/58 (27%), Positives = 23/58 (39%)
Query: 4 REEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEELQAGGH 61
E + E E EE EEE EE+ E ++ EE + E +A G+
Sbjct: 28 PEPPPPEPAAPPPEPPEPEEVPEEEAAPLTEEELEAIRQQAHEEGFAAGKAEGRAEGY 85
Score = 25.7 bits (57), Expect = 6.2
Identities = 17/58 (29%), Positives = 21/58 (36%)
Query: 4 REEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEELQAGGH 61
E E E EE EEE EEE E ++ EE + E E G+
Sbjct: 32 PPEPAAPPPEPPEPEEVPEEEAAPLTEEELEAIRQQAHEEGFAAGKAEGRAEGYEAGY 89
>gnl|CDD|214395 CHL00204, ycf1, Ycf1; Provisional.
Length = 1832
Score = 29.3 bits (66), Expect = 0.48
Identities = 11/42 (26%), Positives = 27/42 (64%)
Query: 14 EKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEE 55
K+ E + + EE+ ++++++++++EEE + EE+ E E
Sbjct: 730 GKDAEFKISDSVEEKTKKKKKKEKKKEEEYKREEKARIEIAE 771
Score = 28.9 bits (65), Expect = 0.64
Identities = 11/42 (26%), Positives = 26/42 (61%)
Query: 5 EEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEE 46
++ E + + EE+ ++++++E+ +EEE + EE+ E E
Sbjct: 730 GKDAEFKISDSVEEKTKKKKKKEKKKEEEYKREEKARIEIAE 771
Score = 28.5 bits (64), Expect = 0.72
Identities = 22/66 (33%), Positives = 32/66 (48%), Gaps = 12/66 (18%)
Query: 7 EEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEE--------EEEEE----EEEE 54
+E E EE+ E EEE + E E E + +E+E EE EE E+ +E E
Sbjct: 243 KETSETEERVESEEETDVEIETASETKGTKQEQEGSTEEDPSPSLFSEEREDPDKIDETE 302
Query: 55 ELQAGG 60
E++ G
Sbjct: 303 EIRVNG 308
Score = 28.5 bits (64), Expect = 0.79
Identities = 11/43 (25%), Positives = 26/43 (60%)
Query: 1 MGKREEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEE 43
GK E + + E++ ++++++E+++E+E + EE E E
Sbjct: 729 NGKDAEFKISDSVEEKTKKKKKKEKKKEEEYKREEKARIEIAE 771
Score = 27.8 bits (62), Expect = 1.7
Identities = 10/42 (23%), Positives = 27/42 (64%)
Query: 7 EEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEE 48
++ E + + EE+ ++++++++++EEE + EE+ E E
Sbjct: 730 GKDAEFKISDSVEEKTKKKKKKEKKKEEEYKREEKARIEIAE 771
Score = 27.4 bits (61), Expect = 1.9
Identities = 17/42 (40%), Positives = 23/42 (54%)
Query: 10 KEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEE 51
K+ +E E EE E EEE D E E E + ++E+E EE
Sbjct: 240 KKLKETSETEERVESEEETDVEIETASETKGTKQEQEGSTEE 281
Score = 27.0 bits (60), Expect = 2.7
Identities = 10/42 (23%), Positives = 25/42 (59%)
Query: 8 EEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEE 49
+ E + + EE+ +++++ E+++EE+ + EE+ E E
Sbjct: 730 GKDAEFKISDSVEEKTKKKKKKEKKKEEEYKREEKARIEIAE 771
Score = 26.2 bits (58), Expect = 5.7
Identities = 10/40 (25%), Positives = 25/40 (62%)
Query: 12 EEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEE 51
+ E + + EE+ +++ ++E++++EE + EE+ E E
Sbjct: 732 DAEFKISDSVEEKTKKKKKKEKKKEEEYKREEKARIEIAE 771
Score = 26.2 bits (58), Expect = 5.9
Identities = 11/42 (26%), Positives = 25/42 (59%)
Query: 12 EEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEE 53
++ E + + EE+ + ++++E+ +EEE + EE+ E E
Sbjct: 730 GKDAEFKISDSVEEKTKKKKKKEKKKEEEYKREEKARIEIAE 771
Score = 25.8 bits (57), Expect = 6.5
Identities = 9/39 (23%), Positives = 26/39 (66%)
Query: 19 EEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEELQ 57
++ E + + EE+ + ++++E+++EEE + EE+ ++
Sbjct: 730 GKDAEFKISDSVEEKTKKKKKKEKKKEEEYKREEKARIE 768
Score = 25.8 bits (57), Expect = 6.8
Identities = 18/52 (34%), Positives = 27/52 (51%), Gaps = 10/52 (19%)
Query: 2 GKREEEEEKEEEEKEEEEEEEEEEE---EED-------EEEEEEDEEEEEEE 43
+ EEE + E E E + ++E+E EED EE E+ D+ +E EE
Sbjct: 252 VESEEETDVEIETASETKGTKQEQEGSTEEDPSPSLFSEEREDPDKIDETEE 303
Score = 25.8 bits (57), Expect = 7.1
Identities = 13/44 (29%), Positives = 26/44 (59%), Gaps = 2/44 (4%)
Query: 9 EKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEE 52
K+ E K + EE+ ++++ ++E++ EEE + EE+ E E
Sbjct: 730 GKDAEFKISDSVEEKTKKKK--KKEKKKEEEYKREEKARIEIAE 771
Score = 25.8 bits (57), Expect = 7.6
Identities = 12/32 (37%), Positives = 22/32 (68%)
Query: 5 EEEEEKEEEEKEEEEEEEEEEEEEDEEEEEED 36
E+ ++K+++EK++EEE + EE+ E E D
Sbjct: 743 EKTKKKKKKEKKKEEEYKREEKARIEIAEAWD 774
Score = 25.4 bits (56), Expect = 8.5
Identities = 11/42 (26%), Positives = 24/42 (57%)
Query: 13 EEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEE 54
+ E + + EE+ +++++E ++EEE + EE+ E E
Sbjct: 730 GKDAEFKISDSVEEKTKKKKKKEKKKEEEYKREEKARIEIAE 771
Score = 25.4 bits (56), Expect = 9.7
Identities = 9/40 (22%), Positives = 26/40 (65%)
Query: 17 EEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEEL 56
++ E + + +E+ +++ ++E+++EEE + EE+ E+
Sbjct: 730 GKDAEFKISDSVEEKTKKKKKKEKKKEEEYKREEKARIEI 769
>gnl|CDD|215107 PLN00220, PLN00220, tubulin beta chain; Provisional.
Length = 447
Score = 29.0 bits (65), Expect = 0.49
Identities = 19/48 (39%), Positives = 27/48 (56%)
Query: 2 GKREEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEE 49
G+ +E E E E + E ++ +D +EE E E+EEEEEE EE
Sbjct: 400 GEGMDEMEFTEAESNMNDLVSEYQQYQDATADEEGEYEDEEEEEEYEE 447
Score = 27.1 bits (60), Expect = 2.5
Identities = 17/43 (39%), Positives = 24/43 (55%)
Query: 13 EEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEE 55
+E E E E + E ++ +D +EE E E+EEEEEE E
Sbjct: 404 DEMEFTEAESNMNDLVSEYQQYQDATADEEGEYEDEEEEEEYE 446
Score = 26.3 bits (58), Expect = 4.6
Identities = 18/47 (38%), Positives = 26/47 (55%)
Query: 8 EEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEE 54
E +E E E E + E ++ ++ +EE E E+EEEEEE EE
Sbjct: 401 EGMDEMEFTEAESNMNDLVSEYQQYQDATADEEGEYEDEEEEEEYEE 447
Score = 26.3 bits (58), Expect = 5.1
Identities = 17/47 (36%), Positives = 26/47 (55%)
Query: 5 EEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEE 51
E +E E E E + E ++ ++ ++E E E+EEEEEE EE
Sbjct: 401 EGMDEMEFTEAESNMNDLVSEYQQYQDATADEEGEYEDEEEEEEYEE 447
>gnl|CDD|236912 PRK11448, hsdR, type I restriction enzyme EcoKI subunit R;
Provisional.
Length = 1123
Score = 29.1 bits (66), Expect = 0.49
Identities = 12/51 (23%), Positives = 27/51 (52%)
Query: 8 EEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEELQA 58
+++ E + E+ + + E + +E + E EE+++E E + E+LQ
Sbjct: 155 KQQLELQAREKAQSQALAEAQQQELVALEGLAAELEEKQQELEAQLEQLQE 205
Score = 28.4 bits (64), Expect = 0.95
Identities = 12/54 (22%), Positives = 26/54 (48%)
Query: 5 EEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEELQA 58
+++ K++ E + E+ + E + +E E E EE+++EL+A
Sbjct: 145 HALQQEVLTLKQQLELQAREKAQSQALAEAQQQELVALEGLAAELEEKQQELEA 198
Score = 28.4 bits (64), Expect = 0.98
Identities = 12/56 (21%), Positives = 30/56 (53%)
Query: 3 KREEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEELQA 58
K++ E + E+ + + E +++E E + EE+++E E + E+ +E+ +
Sbjct: 155 KQQLELQAREKAQSQALAEAQQQELVALEGLAAELEEKQQELEAQLEQLQEKAAET 210
>gnl|CDD|113290 pfam04514, BTV_NS2, Bluetongue virus non-structural protein NS2.
This family includes NS2 proteins from other members of
the Orbivirus genus. NS2 is a non-specific
single-stranded RNA-binding protein that forms large
homomultimers and accumulates in viral inclusion bodies
of infected cells. Three RNA binding regions have been
identified in Bluetongue virus serotype 17 at residues
2-11, 153-166 and 274-286. NS2 multimers also possess
nucleotidyl phosphatase activity. The precise function
of NS2 is not known, but it may be involved in the
transport and condensation of viral mRNAs.
Length = 363
Score = 29.1 bits (65), Expect = 0.51
Identities = 17/45 (37%), Positives = 25/45 (55%)
Query: 1 MGKREEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEE 45
M EE + + KE+E EE E + +DE+E ED E+ E + E
Sbjct: 230 MINWNLEERRRDLRKEQELEENVERDSDDEDEHGEDSEDGETKPE 274
Score = 27.2 bits (60), Expect = 2.2
Identities = 13/43 (30%), Positives = 25/43 (58%)
Query: 4 REEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEE 46
EE+ + ++E+E EE E + D+E+E ++ E+ E + E
Sbjct: 232 NWNLEERRRDLRKEQELEENVERDSDDEDEHGEDSEDGETKPE 274
Score = 27.2 bits (60), Expect = 2.4
Identities = 14/51 (27%), Positives = 25/51 (49%)
Query: 4 REEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEE 54
R E E EE + +E++ EE E + ++E+E E+ E+ E +
Sbjct: 222 RRLAELVEMINWNLEERRRDLRKEQELEENVERDSDDEDEHGEDSEDGETK 272
Score = 27.2 bits (60), Expect = 2.5
Identities = 15/56 (26%), Positives = 26/56 (46%)
Query: 6 EEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEELQAGGH 61
E E E EE + E+E EE+ E + ++E+E E+ E+ E + +
Sbjct: 221 ERRLAELVEMINWNLEERRRDLRKEQELEENVERDSDDEDEHGEDSEDGETKPESY 276
>gnl|CDD|237629 PRK14160, PRK14160, heat shock protein GrpE; Provisional.
Length = 211
Score = 29.0 bits (65), Expect = 0.53
Identities = 22/49 (44%), Positives = 33/49 (67%)
Query: 5 EEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEE 53
EE+ KE E KEE++ +EE+ E E+ E+EE E+ EE E + EE ++E
Sbjct: 14 EEDCCKENENKEEDKGKEEDLEFEEIEKEEIIEDSEESNEVKIEELKDE 62
Score = 28.6 bits (64), Expect = 0.73
Identities = 20/58 (34%), Positives = 36/58 (62%)
Query: 1 MGKREEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEELQA 58
M K ++ + E E++ +E E +EE++ +EE+ E EE E+EE E+ EE E +++
Sbjct: 1 MEKECKDAKHENMEEDCCKENENKEEDKGKEEDLEFEEIEKEEIIEDSEESNEVKIEE 58
Score = 28.2 bits (63), Expect = 0.80
Identities = 22/55 (40%), Positives = 35/55 (63%)
Query: 3 KREEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEELQ 57
K + E EE+ +E E +EE++ +E++ E EE E+EE E+ EE E + EEL+
Sbjct: 6 KDAKHENMEEDCCKENENKEEDKGKEEDLEFEEIEKEEIIEDSEESNEVKIEELK 60
Score = 28.2 bits (63), Expect = 0.92
Identities = 20/54 (37%), Positives = 33/54 (61%)
Query: 3 KREEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEEL 56
K E EE +E E +EE++ +EE+ + EE E++E E+ EE E + EE ++
Sbjct: 9 KHENMEEDCCKENENKEEDKGKEEDLEFEEIEKEEIIEDSEESNEVKIEELKDE 62
Score = 26.3 bits (58), Expect = 4.3
Identities = 19/51 (37%), Positives = 33/51 (64%)
Query: 5 EEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEE 55
+E E +EE+K +EE+ E EE E++E E+ +E E + EE ++E + +E
Sbjct: 18 CKENENKEEDKGKEEDLEFEEIEKEEIIEDSEESNEVKIEELKDENNKLKE 68
Score = 25.9 bits (57), Expect = 5.1
Identities = 20/53 (37%), Positives = 34/53 (64%)
Query: 3 KREEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEE 55
+E E KEE++ +EE+ E EE E+E+ E+ E+ E + EE ++E + +EE
Sbjct: 17 CCKENENKEEDKGKEEDLEFEEIEKEEIIEDSEESNEVKIEELKDENNKLKEE 69
>gnl|CDD|227352 COG5019, CDC3, Septin family protein [Cell division and chromosome
partitioning / Cytoskeleton].
Length = 373
Score = 28.8 bits (65), Expect = 0.54
Identities = 15/52 (28%), Positives = 27/52 (51%)
Query: 5 EEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEEL 56
E ++ E + EEE E +++ ++ E+E EE E+ EE +E +L
Sbjct: 300 EPSLKEIHEARLNEEERELKKKFTEKIREKEKRLEELEQNLIEERKELNSKL 351
Score = 28.4 bits (64), Expect = 0.78
Identities = 17/56 (30%), Positives = 37/56 (66%)
Query: 3 KREEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEELQA 58
+RE +++ E+ +E+E+ EE E+ EE +E + + EE +++ E+ E+ E+L++
Sbjct: 315 ERELKKKFTEKIREKEKRLEELEQNLIEERKELNSKLEEIQKKLEDLEKRLEKLKS 370
Score = 27.3 bits (61), Expect = 1.7
Identities = 15/55 (27%), Positives = 25/55 (45%)
Query: 4 REEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEELQA 58
R E+ + E +E E +EE E + + E+ E+E+ EE E+ L
Sbjct: 288 RTEKLSGLKNSGEPSLKEIHEARLNEEERELKKKFTEKIREKEKRLEELEQNLIE 342
Score = 27.3 bits (61), Expect = 1.8
Identities = 17/56 (30%), Positives = 27/56 (48%)
Query: 1 MGKREEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEEL 56
+ + E +E E EEE E + + E+ E+E+ EE E+ EE +EL
Sbjct: 292 LSGLKNSGEPSLKEIHEARLNEEERELKKKFTEKIREKEKRLEELEQNLIEERKEL 347
Score = 27.3 bits (61), Expect = 2.2
Identities = 17/58 (29%), Positives = 30/58 (51%)
Query: 2 GKREEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEELQAG 59
EE E K++ ++ E+E+ EE E EE E + EE +++ E+ E+ L+
Sbjct: 311 LNEEERELKKKFTEKIREKEKRLEELEQNLIEERKELNSKLEEIQKKLEDLEKRLEKL 368
Score = 26.9 bits (60), Expect = 2.5
Identities = 16/58 (27%), Positives = 33/58 (56%)
Query: 1 MGKREEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEELQA 58
+ + E E +K+ EK E+E+ EE E++ EE ++ + EE +++ E+ E+ +
Sbjct: 311 LNEEERELKKKFTEKIREKEKRLEELEQNLIEERKELNSKLEEIQKKLEDLEKRLEKL 368
>gnl|CDD|223649 COG0576, GrpE, Molecular chaperone GrpE (heat shock protein)
[Posttranslational modification, protein turnover,
chaperones].
Length = 193
Score = 28.8 bits (65), Expect = 0.55
Identities = 27/49 (55%), Positives = 35/49 (71%)
Query: 10 KEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEELQA 58
++E+K EE + EE EE E EEEE +EEE EEE E EEE++E EL+A
Sbjct: 2 SDKEQKTEEPDAEETEEAEKSEEEEAEEEEPEEENELEEEQQEIAELEA 50
Score = 28.4 bits (64), Expect = 0.57
Identities = 27/56 (48%), Positives = 35/56 (62%)
Query: 3 KREEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEELQA 58
+ + EE EE EK EEEE EEEE EE+ E EEE +E E E + EE +++ QA
Sbjct: 9 EEPDAEETEEAEKSEEEEAEEEEPEEENELEEEQQEIAELEAQLEELKDKYLRAQA 64
Score = 28.4 bits (64), Expect = 0.68
Identities = 25/55 (45%), Positives = 38/55 (69%)
Query: 3 KREEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEELQ 57
+E++ +E + +E EE E+ EEEE +EEE EE+ E EEE++E E E + EEL+
Sbjct: 2 SDKEQKTEEPDAEETEEAEKSEEEEAEEEEPEEENELEEEQQEIAELEAQLEELK 56
Score = 27.7 bits (62), Expect = 1.3
Identities = 25/53 (47%), Positives = 35/53 (66%)
Query: 5 EEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEELQ 57
EE + EE E+ E+ EEEE EEEE EEE E +EE++E E E + EE +++
Sbjct: 8 TEEPDAEETEEAEKSEEEEAEEEEPEEENELEEEQQEIAELEAQLEELKDKYL 60
Score = 27.3 bits (61), Expect = 1.7
Identities = 26/54 (48%), Positives = 38/54 (70%)
Query: 1 MGKREEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEE 54
M +E++ E+ + E+ EE E+ EEEE E+EE EEE+E EEE++E E E + EE
Sbjct: 1 MSDKEQKTEEPDAEETEEAEKSEEEEAEEEEPEEENELEEEQQEIAELEAQLEE 54
Score = 25.0 bits (55), Expect = 9.6
Identities = 24/51 (47%), Positives = 33/51 (64%)
Query: 5 EEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEE 55
EE E+ EEEE EEEE EEE E EE+++E E E + EE +++ + E E
Sbjct: 17 EEAEKSEEEEAEEEEPEEENELEEEQQEIAELEAQLEELKDKYLRAQAEFE 67
>gnl|CDD|219922 pfam08595, RXT2_N, RXT2-like, N-terminal. The family represents
the N-terminal region of RXT2-like proteins. In S.
cerevisiae, RXT2 has been demonstrated to be involved
in conjugation with cellular fusion (mating) and
invasive growth. A high throughput localisation study
has localised RXT2 to the nucleus.
Length = 141
Score = 28.5 bits (64), Expect = 0.55
Identities = 9/27 (33%), Positives = 22/27 (81%)
Query: 29 DEEEEEEDEEEEEEEEEEEEEEEEEEE 55
DE+ + D+++E++E++EE + E+++E
Sbjct: 48 DEDGGDIDDDDEDDEDDEEADAEDDDE 74
Score = 28.1 bits (63), Expect = 0.69
Identities = 9/27 (33%), Positives = 22/27 (81%)
Query: 16 EEEEEEEEEEEEEDEEEEEEDEEEEEE 42
+E+ + ++++E+DE++EE D E+++E
Sbjct: 48 DEDGGDIDDDDEDDEDDEEADAEDDDE 74
Score = 27.0 bits (60), Expect = 1.6
Identities = 8/27 (29%), Positives = 22/27 (81%)
Query: 17 EEEEEEEEEEEEDEEEEEEDEEEEEEE 43
+E+ + ++++ED+E++EE + E+++E
Sbjct: 48 DEDGGDIDDDDEDDEDDEEADAEDDDE 74
Score = 27.0 bits (60), Expect = 2.0
Identities = 7/28 (25%), Positives = 23/28 (82%)
Query: 9 EKEEEEKEEEEEEEEEEEEEDEEEEEED 36
+++ + ++++E++E++EE D E+++E+
Sbjct: 48 DEDGGDIDDDDEDDEDDEEADAEDDDEN 75
Score = 27.0 bits (60), Expect = 2.1
Identities = 9/27 (33%), Positives = 22/27 (81%)
Query: 21 EEEEEEEEDEEEEEEDEEEEEEEEEEE 47
+E+ + +D++E++ED+EE + E+++E
Sbjct: 48 DEDGGDIDDDDEDDEDDEEADAEDDDE 74
Score = 26.6 bits (59), Expect = 2.3
Identities = 9/27 (33%), Positives = 22/27 (81%)
Query: 27 EEDEEEEEEDEEEEEEEEEEEEEEEEE 53
+ED + ++D+E++E++EE + E+++E
Sbjct: 48 DEDGGDIDDDDEDDEDDEEADAEDDDE 74
Score = 26.6 bits (59), Expect = 2.6
Identities = 7/27 (25%), Positives = 22/27 (81%)
Query: 22 EEEEEEEDEEEEEEDEEEEEEEEEEEE 48
+E+ + D+++E+++++EE + E+++E
Sbjct: 48 DEDGGDIDDDDEDDEDDEEADAEDDDE 74
Score = 26.6 bits (59), Expect = 2.8
Identities = 9/27 (33%), Positives = 22/27 (81%)
Query: 24 EEEEEDEEEEEEDEEEEEEEEEEEEEE 50
+E+ D ++++ED+E++EE + E+++E
Sbjct: 48 DEDGGDIDDDDEDDEDDEEADAEDDDE 74
Score = 26.6 bits (59), Expect = 2.8
Identities = 7/27 (25%), Positives = 22/27 (81%)
Query: 19 EEEEEEEEEEDEEEEEEDEEEEEEEEE 45
+E+ + +++DE++E+++E + E+++E
Sbjct: 48 DEDGGDIDDDDEDDEDDEEADAEDDDE 74
Score = 26.2 bits (58), Expect = 3.0
Identities = 6/27 (22%), Positives = 22/27 (81%)
Query: 25 EEEEDEEEEEEDEEEEEEEEEEEEEEE 51
+E+ + +++++++E++EE + E+++E
Sbjct: 48 DEDGGDIDDDDEDDEDDEEADAEDDDE 74
Score = 26.2 bits (58), Expect = 3.2
Identities = 9/27 (33%), Positives = 22/27 (81%)
Query: 20 EEEEEEEEEDEEEEEEDEEEEEEEEEE 46
+E+ + ++D+E++E+DEE + E+++E
Sbjct: 48 DEDGGDIDDDDEDDEDDEEADAEDDDE 74
Score = 26.2 bits (58), Expect = 3.8
Identities = 7/29 (24%), Positives = 22/29 (75%)
Query: 28 EDEEEEEEDEEEEEEEEEEEEEEEEEEEL 56
+++ + +D++E++E++EE + E+++E
Sbjct: 48 DEDGGDIDDDDEDDEDDEEADAEDDDENP 76
Score = 26.2 bits (58), Expect = 3.9
Identities = 8/27 (29%), Positives = 22/27 (81%)
Query: 26 EEEDEEEEEEDEEEEEEEEEEEEEEEE 52
+E+ + +++DE++E++EE + E+++E
Sbjct: 48 DEDGGDIDDDDEDDEDDEEADAEDDDE 74
Score = 25.8 bits (57), Expect = 4.5
Identities = 8/27 (29%), Positives = 22/27 (81%)
Query: 23 EEEEEEDEEEEEEDEEEEEEEEEEEEE 49
+E+ + ++++E+DE++EE + E+++E
Sbjct: 48 DEDGGDIDDDDEDDEDDEEADAEDDDE 74
Score = 25.8 bits (57), Expect = 4.7
Identities = 7/27 (25%), Positives = 22/27 (81%)
Query: 12 EEEKEEEEEEEEEEEEEDEEEEEEDEE 38
+E+ + ++++E++E+++E + E+D+E
Sbjct: 48 DEDGGDIDDDDEDDEDDEEADAEDDDE 74
Score = 25.8 bits (57), Expect = 5.3
Identities = 5/27 (18%), Positives = 22/27 (81%)
Query: 18 EEEEEEEEEEEDEEEEEEDEEEEEEEE 44
+E+ + +++++++E++E+ + E+++E
Sbjct: 48 DEDGGDIDDDDEDDEDDEEADAEDDDE 74
Score = 25.0 bits (55), Expect = 8.3
Identities = 7/27 (25%), Positives = 22/27 (81%)
Query: 11 EEEEKEEEEEEEEEEEEEDEEEEEEDE 37
+E+ + ++++E++E++E+ + E++DE
Sbjct: 48 DEDGGDIDDDDEDDEDDEEADAEDDDE 74
>gnl|CDD|240370 PTZ00342, PTZ00342, acyl-CoA synthetase; Provisional.
Length = 746
Score = 28.9 bits (65), Expect = 0.57
Identities = 15/66 (22%), Positives = 30/66 (45%), Gaps = 1/66 (1%)
Query: 3 KREEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEE-EEEELQAGGH 61
+EE+ + +EE++ D E ED E ++E+ E+ ++ + +A
Sbjct: 219 NKEEKNNGSNVNNNGNKNNKEEQKGNDLSNELEDISLGPLEYDKEKLEKIKDLKEKAKKL 278
Query: 62 GIAICQ 67
GI+I
Sbjct: 279 GISIIL 284
>gnl|CDD|148679 pfam07218, RAP1, Rhoptry-associated protein 1 (RAP-1). This family
consists of several rhoptry-associated protein 1 (RAP-1)
sequences which appear to be specific to Plasmodium
falciparum.
Length = 790
Score = 28.9 bits (64), Expect = 0.57
Identities = 19/47 (40%), Positives = 30/47 (63%)
Query: 3 KREEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEE 49
K + ++ EEEE E +EE EE EE++ E E+ E +EE+ + +EE
Sbjct: 234 KNDGDKVAEEEEFELDEEHEEAEEDKKEALEKIGAEGDEEKFKFDEE 280
Score = 27.0 bits (59), Expect = 2.8
Identities = 20/51 (39%), Positives = 32/51 (62%)
Query: 1 MGKREEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEE 51
+ K EEE + + + ++ EEEE E +E+ EE EED++E E+ E +EE
Sbjct: 223 LEKLEEEIDILKNDGDKVAEEEEFELDEEHEEAEEDKKEALEKIGAEGDEE 273
Score = 25.8 bits (56), Expect = 6.6
Identities = 21/58 (36%), Positives = 35/58 (60%)
Query: 3 KREEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEELQAGG 60
K EEEE E +E+ EE EE+++E E E ++E+ + +EE + E + ++ AGG
Sbjct: 239 KVAEEEEFELDEEHEEAEEDKKEALEKIGAEGDEEKFKFDEEIKFIEHDVKDRNIAGG 296
>gnl|CDD|215212 PLN02372, PLN02372, violaxanthin de-epoxidase.
Length = 455
Score = 29.0 bits (65), Expect = 0.59
Identities = 19/51 (37%), Positives = 29/51 (56%)
Query: 5 EEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEE 55
EE E+ +E + EEE E+E E+ +EEE + EE +E E++EE
Sbjct: 371 EEGEKTIVKEARQIEEELEKEVEKLGKEEESLFKRVALEEGLKELEQDEEN 421
Score = 27.9 bits (62), Expect = 1.2
Identities = 20/51 (39%), Positives = 29/51 (56%)
Query: 4 REEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEE 54
E E+E E+ KEEE + EE +E E+DEE +E +EE+E E+
Sbjct: 386 EELEKEVEKLGKEEESLFKRVALEEGLKELEQDEENFLKELSKEEKELLEK 436
Score = 26.7 bits (59), Expect = 3.1
Identities = 20/55 (36%), Positives = 30/55 (54%)
Query: 1 MGKREEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEE 55
+ K EE EK ++ + EEE E+E E +EEE + EE +E E++EE
Sbjct: 366 LEKDVEEGEKTIVKEARQIEEELEKEVEKLGKEEESLFKRVALEEGLKELEQDEE 420
Score = 26.3 bits (58), Expect = 4.0
Identities = 20/53 (37%), Positives = 30/53 (56%), Gaps = 1/53 (1%)
Query: 6 EEEEKEEEEKEEE-EEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEELQ 57
E EK+ EE E+ +E + EEE E+E E+ +EEE + EE +EL+
Sbjct: 364 ERLEKDVEEGEKTIVKEARQIEEELEKEVEKLGKEEESLFKRVALEEGLKELE 416
Score = 26.3 bits (58), Expect = 4.0
Identities = 19/54 (35%), Positives = 33/54 (61%)
Query: 4 REEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEELQ 57
R+ EEE E+E ++ +EEE + EE ++ E++EE +E +EE+E L+
Sbjct: 382 RQIEEELEKEVEKLGKEEESLFKRVALEEGLKELEQDEENFLKELSKEEKELLE 435
>gnl|CDD|235285 PRK04335, PRK04335, cell division protein ZipA; Provisional.
Length = 313
Score = 28.6 bits (64), Expect = 0.59
Identities = 17/47 (36%), Positives = 25/47 (53%)
Query: 7 EEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEE 53
EE ++EE EE E + + + EEE E E +E EE + E E +
Sbjct: 130 EEPRDEEVLEEPEPVAAKVPMAEVQPEEETEIEVDEPEEPKPEPELD 176
Score = 28.2 bits (63), Expect = 0.95
Identities = 20/54 (37%), Positives = 26/54 (48%)
Query: 4 REEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEELQ 57
+ E + EE EE EE E + E + EEE E E +E EE + E EL
Sbjct: 123 EKVEPQVEEPRDEEVLEEPEPVAAKVPMAEVQPEEETEIEVDEPEEPKPEPELD 176
Score = 26.3 bits (58), Expect = 3.9
Identities = 18/53 (33%), Positives = 26/53 (49%)
Query: 7 EEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEELQAG 59
E EEEE + E+EE + + + E E + EE +EE EE E + A
Sbjct: 95 GGELEEEEDKFEQEEAPIPVQAQSQPQPEKVEPQVEEPRDEEVLEEPEPVAAK 147
Score = 25.9 bits (57), Expect = 6.1
Identities = 19/53 (35%), Positives = 27/53 (50%)
Query: 5 EEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEELQ 57
E+ E + EE +EE EE E + E + EEE E E +E EE + E +
Sbjct: 122 PEKVEPQVEEPRDEEVLEEPEPVAAKVPMAEVQPEEETEIEVDEPEEPKPEPE 174
>gnl|CDD|184287 PRK13735, PRK13735, conjugal transfer mating pair stabilization
protein TraG; Provisional.
Length = 942
Score = 28.9 bits (65), Expect = 0.59
Identities = 10/56 (17%), Positives = 20/56 (35%)
Query: 2 GKREEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEELQ 57
G + EE + + E + + + + EE+ +E + EEL
Sbjct: 875 GDTQNSIRGEENTVKGQYSELQNHHKTEALSQNNKYNEEKSAQERMPGADSPEELM 930
Score = 28.2 bits (63), Expect = 1.2
Identities = 10/57 (17%), Positives = 21/57 (36%)
Query: 1 MGKREEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEELQ 57
+ E + + E + + E + EE+ +E + EE + +E Q
Sbjct: 881 IRGEENTVKGQYSELQNHHKTEALSQNNKYNEEKSAQERMPGADSPEELMKRAKEYQ 937
Score = 27.8 bits (62), Expect = 1.6
Identities = 9/51 (17%), Positives = 22/51 (43%)
Query: 3 KREEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEE 53
K + E + + E + + EE+ +E + EE + +E +++
Sbjct: 889 KGQYSELQNHHKTEALSQNNKYNEEKSAQERMPGADSPEELMKRAKEYQDK 939
>gnl|CDD|220684 pfam10310, DUF2413, Protein of unknown function (DUF2413). This is
a family of proteins conserved in fungi. The function is
not known.
Length = 436
Score = 29.0 bits (65), Expect = 0.60
Identities = 14/50 (28%), Positives = 19/50 (38%)
Query: 3 KREEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEE 52
K E EEK + + E + + E EEEEE EE +
Sbjct: 70 KPTESSAASSEEKPAKPRKSAESTRSSHPKSKAPSTESEEEEEPEETPDP 119
Score = 27.8 bits (62), Expect = 1.2
Identities = 13/56 (23%), Positives = 21/56 (37%)
Query: 3 KREEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEELQA 58
+ ++ K E EE+ + + E + + E EEEEE EE
Sbjct: 63 RNPKKSSKPTESSAASSEEKPAKPRKSAESTRSSHPKSKAPSTESEEEEEPEETPD 118
Score = 27.8 bits (62), Expect = 1.4
Identities = 11/47 (23%), Positives = 18/47 (38%)
Query: 7 EEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEE 53
E E++ + + E + + E EEEEE EE +
Sbjct: 73 ESSAASSEEKPAKPRKSAESTRSSHPKSKAPSTESEEEEEPEETPDP 119
Score = 27.1 bits (60), Expect = 2.2
Identities = 11/47 (23%), Positives = 17/47 (36%)
Query: 8 EEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEE 54
E +E+ + + E + E EEEEE EE +
Sbjct: 73 ESSAASSEEKPAKPRKSAESTRSSHPKSKAPSTESEEEEEPEETPDP 119
>gnl|CDD|233186 TIGR00920, 2A060605, 3-hydroxy-3-methylglutaryl-coenzyme A
reductase. [Transport and binding proteins,
Carbohydrates, organic alcohols, and acids].
Length = 889
Score = 28.7 bits (64), Expect = 0.62
Identities = 13/53 (24%), Positives = 19/53 (35%)
Query: 28 EDEEEEEEDEEEEEEEEEEEEEEEEEEELQAGGHGIAICQCKSAKIVTTKTIP 80
E E EEE E +E L++ A+ + +V K IP
Sbjct: 425 EQPSCSAPKEPEEELPAEPRPIDECLSILKSDKGAQALSDAEVIALVNAKHIP 477
>gnl|CDD|227701 COG5414, COG5414, TATA-binding protein-associated factor
[Transcription].
Length = 392
Score = 28.9 bits (64), Expect = 0.63
Identities = 21/58 (36%), Positives = 35/58 (60%)
Query: 2 GKREEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEELQAG 59
G +E+++E+ E + +EE + + +E EE+EED+E EE E E +E EL+ G
Sbjct: 292 GDKEQQQEEVENAEAHKEEVQSDRPDEIGEEKEEDDENEENERHTELLADELNELEKG 349
Score = 28.5 bits (63), Expect = 0.68
Identities = 20/51 (39%), Positives = 31/51 (60%)
Query: 5 EEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEE 55
E +E E +KE+++EE E E EE + + +E EE+EE++E EE E
Sbjct: 284 IENKEVSEGDKEQQQEEVENAEAHKEEVQSDRPDEIGEEKEEDDENEENER 334
Score = 28.5 bits (63), Expect = 0.73
Identities = 20/49 (40%), Positives = 32/49 (65%)
Query: 6 EEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEE 54
E E KE E ++E+++EE E E +EE + + +E EE+EE++E EE
Sbjct: 283 EIENKEVSEGDKEQQQEEVENAEAHKEEVQSDRPDEIGEEKEEDDENEE 331
Score = 28.5 bits (63), Expect = 0.83
Identities = 21/57 (36%), Positives = 34/57 (59%)
Query: 1 MGKREEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEELQ 57
+G E E ++ E +E+++EE E E +EE + D +E EE+EE++E EE E
Sbjct: 279 VGAAEIENKEVSEGDKEQQQEEVENAEAHKEEVQSDRPDEIGEEKEEDDENEENERH 335
Score = 27.0 bits (59), Expect = 3.1
Identities = 20/55 (36%), Positives = 31/55 (56%)
Query: 2 GKREEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEEL 56
+E E +E+++EE E E +EE + +E EE+EE++E EE E E L
Sbjct: 285 ENKEVSEGDKEQQQEEVENAEAHKEEVQSDRPDEIGEEKEEDDENEENERHTELL 339
Score = 26.6 bits (58), Expect = 3.2
Identities = 20/54 (37%), Positives = 34/54 (62%)
Query: 5 EEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEELQA 58
+E E ++E+++EE E E +EE + + ++ EE+EE++E EE E EL A
Sbjct: 287 KEVSEGDKEQQQEEVENAEAHKEEVQSDRPDEIGEEKEEDDENEENERHTELLA 340
Score = 26.2 bits (57), Expect = 5.0
Identities = 20/63 (31%), Positives = 33/63 (52%)
Query: 2 GKREEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEELQAGGH 61
++E+++EE + E +EE + + +E EE EE++E EE E E +EL
Sbjct: 289 VSEGDKEQQQEEVENAEAHKEEVQSDRPDEIGEEKEEDDENEENERHTELLADELNELEK 348
Query: 62 GIA 64
GI
Sbjct: 349 GIE 351
>gnl|CDD|227199 COG4862, MecA, Negative regulator of genetic competence,
sporulation and motility [Posttranslational
modification, protein turnover, chaperones / Signal
transduction mechanisms / Cell motility and secretion].
Length = 224
Score = 28.5 bits (64), Expect = 0.63
Identities = 17/55 (30%), Positives = 31/55 (56%)
Query: 3 KREEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEELQ 57
K + E E ++ E + +E+ EE E+ EE ++ E+EE+ +E E+E + L
Sbjct: 77 KSKIEGEGPDDLDEFLDMPDEDGAEEGLEQLEEKFDDVEKEEQGDEAEKEPDYLY 131
>gnl|CDD|184724 PRK14520, rpsP, 30S ribosomal protein S16; Provisional.
Length = 155
Score = 28.5 bits (64), Expect = 0.64
Identities = 10/53 (18%), Positives = 13/53 (24%)
Query: 3 KREEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEE 55
K E E E +++ E E E EEE
Sbjct: 102 KLELFNAALAEADGGPTAEATTPKKKKAAAEAAAAEAAAPAAEAAAAAAAEEE 154
Score = 28.1 bits (63), Expect = 0.74
Identities = 8/49 (16%), Positives = 13/49 (26%)
Query: 7 EEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEE 55
E + E ++++ E E E EEE
Sbjct: 107 NAALAEADGGPTAEATTPKKKKAAAEAAAAEAAAPAAEAAAAAAAEEEA 155
Score = 28.1 bits (63), Expect = 0.85
Identities = 8/45 (17%), Positives = 13/45 (28%)
Query: 4 REEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEE 48
E + E ++++ E E E EEE
Sbjct: 111 AEADGGPTAEATTPKKKKAAAEAAAAEAAAPAAEAAAAAAAEEEA 155
Score = 27.7 bits (62), Expect = 1.2
Identities = 7/49 (14%), Positives = 13/49 (26%)
Query: 6 EEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEE 54
E + E ++++ E + E EEE
Sbjct: 107 NAALAEADGGPTAEATTPKKKKAAAEAAAAEAAAPAAEAAAAAAAEEEA 155
Score = 27.4 bits (61), Expect = 1.3
Identities = 7/49 (14%), Positives = 13/49 (26%)
Query: 5 EEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEE 53
+ + E ++++ E E E EEE
Sbjct: 107 NAALAEADGGPTAEATTPKKKKAAAEAAAAEAAAPAAEAAAAAAAEEEA 155
Score = 26.6 bits (59), Expect = 2.8
Identities = 6/49 (12%), Positives = 12/49 (24%)
Query: 10 KEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEELQA 58
+ + E + ++ E E E E +A
Sbjct: 107 NAALAEADGGPTAEATTPKKKKAAAEAAAAEAAAPAAEAAAAAAAEEEA 155
Score = 26.6 bits (59), Expect = 3.0
Identities = 8/40 (20%), Positives = 12/40 (30%)
Query: 2 GKREEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEE 41
G E ++++ E E E EEE
Sbjct: 116 GPTAEATTPKKKKAAAEAAAAEAAAPAAEAAAAAAAEEEA 155
Score = 25.0 bits (55), Expect = 7.9
Identities = 4/49 (8%), Positives = 10/49 (20%)
Query: 11 EEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEELQAG 59
E + E +++ + E E +
Sbjct: 107 NAALAEADGGPTAEATTPKKKKAAAEAAAAEAAAPAAEAAAAAAAEEEA 155
>gnl|CDD|178439 PLN02847, PLN02847, triacylglycerol lipase.
Length = 633
Score = 28.7 bits (64), Expect = 0.64
Identities = 19/56 (33%), Positives = 25/56 (44%)
Query: 5 EEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEELQAGG 60
EEE E E E E+E +E E D + +EEE +E EEE + A
Sbjct: 484 RVITSSVEEEVTEGELWYELEKELQRQETEVDAQAQEEEAAAAKEITEEENVLAKA 539
Score = 26.8 bits (59), Expect = 3.4
Identities = 19/59 (32%), Positives = 26/59 (44%)
Query: 2 GKREEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEELQAGG 60
R EEE E E E E+E + +E E + + +EEE +E EEE L
Sbjct: 482 EDRVITSSVEEEVTEGELWYELEKELQRQETEVDAQAQEEEAAAAKEITEEENVLAKAV 540
Score = 26.0 bits (57), Expect = 5.2
Identities = 18/50 (36%), Positives = 25/50 (50%)
Query: 5 EEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEE 54
EEEEE E EEE E E E ++E + +E E + + +EEE
Sbjct: 473 EEEEEPLLSEDRVITSSVEEEVTEGELWYELEKELQRQETEVDAQAQEEE 522
Score = 25.6 bits (56), Expect = 7.7
Identities = 18/57 (31%), Positives = 29/57 (50%), Gaps = 3/57 (5%)
Query: 5 EEEEEKEEEEKEEEEEEEEEEEEEDEEEEE---EDEEEEEEEEEEEEEEEEEEELQA 58
++E+EEE E+ EE+ E E E E+E + +E E + + +EEE A
Sbjct: 469 GHDDEEEEEPLLSEDRVITSSVEEEVTEGELWYELEKELQRQETEVDAQAQEEEAAA 525
>gnl|CDD|218555 pfam05320, Pox_RNA_Pol_19, Poxvirus DNA-directed RNA polymerase
19 kDa subunit. This family contains several
DNA-directed RNA polymerase 19 kDa polypeptides. The
Poxvirus DNA-directed RNA polymerase (EC: 2.7.7.6)
catalyzes DNA-template-directed extension of the 3'-end
of an RNA strand by one nucleotide at a time.
Length = 167
Score = 28.5 bits (64), Expect = 0.64
Identities = 13/35 (37%), Positives = 23/35 (65%)
Query: 21 EEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEE 55
E+ ++ + E ++++ EE EEEEE+EE+ E E
Sbjct: 2 EDSDDIIDYESDDDDSEEYEEEEEDEEDAESLESS 36
Score = 27.4 bits (61), Expect = 1.6
Identities = 13/36 (36%), Positives = 24/36 (66%)
Query: 17 EEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEE 52
E+ ++ + E +D++ EE +EEEE+EE+ E E +
Sbjct: 2 EDSDDIIDYESDDDDSEEYEEEEEDEEDAESLESSD 37
Score = 27.0 bits (60), Expect = 2.0
Identities = 15/32 (46%), Positives = 23/32 (71%)
Query: 25 EEEEDEEEEEEDEEEEEEEEEEEEEEEEEEEL 56
E+ +D + E D+++ EE EEEEE+EE+ E L
Sbjct: 2 EDSDDIIDYESDDDDSEEYEEEEEDEEDAESL 33
Score = 27.0 bits (60), Expect = 2.0
Identities = 12/36 (33%), Positives = 24/36 (66%)
Query: 19 EEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEE 54
E+ ++ + E ++++ E+ EEEEE+EE+ E E +
Sbjct: 2 EDSDDIIDYESDDDDSEEYEEEEEDEEDAESLESSD 37
Score = 27.0 bits (60), Expect = 2.3
Identities = 13/36 (36%), Positives = 24/36 (66%)
Query: 16 EEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEE 51
E+ ++ + E ++D+ EE E+EEE+EE+ E E +
Sbjct: 2 EDSDDIIDYESDDDDSEEYEEEEEDEEDAESLESSD 37
Score = 26.6 bits (59), Expect = 2.5
Identities = 14/36 (38%), Positives = 24/36 (66%)
Query: 18 EEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEE 53
E+ ++ + E D+++ EE EEEEE+EE+ E E +
Sbjct: 2 EDSDDIIDYESDDDDSEEYEEEEEDEEDAESLESSD 37
Score = 26.6 bits (59), Expect = 2.7
Identities = 13/36 (36%), Positives = 23/36 (63%)
Query: 12 EEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEE 47
E+ + + E ++++ E+ EEEEEDEE+ E E +
Sbjct: 2 EDSDDIIDYESDDDDSEEYEEEEEDEEDAESLESSD 37
Score = 26.2 bits (58), Expect = 4.0
Identities = 12/36 (33%), Positives = 23/36 (63%)
Query: 8 EEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEE 43
E+ ++ E ++++ EE EE+EE+EE+ E E +
Sbjct: 2 EDSDDIIDYESDDDDSEEYEEEEEDEEDAESLESSD 37
Score = 26.2 bits (58), Expect = 4.0
Identities = 12/36 (33%), Positives = 23/36 (63%)
Query: 14 EKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEE 49
E ++ + E ++++ EE EEE+E+EE+ E E +
Sbjct: 2 EDSDDIIDYESDDDDSEEYEEEEEDEEDAESLESSD 37
Score = 26.2 bits (58), Expect = 4.3
Identities = 11/36 (30%), Positives = 24/36 (66%)
Query: 13 EEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEE 48
E+ ++ + E ++++ +E EEEE++EE+ E E +
Sbjct: 2 EDSDDIIDYESDDDDSEEYEEEEEDEEDAESLESSD 37
Score = 25.8 bits (57), Expect = 4.8
Identities = 14/36 (38%), Positives = 24/36 (66%)
Query: 5 EEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEE 40
E+ ++ + E ++++ EE EEEEEDEE+ E E +
Sbjct: 2 EDSDDIIDYESDDDDSEEYEEEEEDEEDAESLESSD 37
Score = 25.4 bits (56), Expect = 6.5
Identities = 10/35 (28%), Positives = 23/35 (65%)
Query: 11 EEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEE 45
+ ++ + E ++++ EE +EEEE+E++ E E +
Sbjct: 3 DSDDIIDYESDDDDSEEYEEEEEDEEDAESLESSD 37
Score = 25.4 bits (56), Expect = 7.0
Identities = 14/37 (37%), Positives = 22/37 (59%)
Query: 1 MGKREEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDE 37
M ++ + E ++ + EE EEEEE+EED E E +
Sbjct: 1 MEDSDDIIDYESDDDDSEEYEEEEEDEEDAESLESSD 37
>gnl|CDD|237001 PRK11856, PRK11856, branched-chain alpha-keto acid dehydrogenase
subunit E2; Reviewed.
Length = 411
Score = 28.6 bits (65), Expect = 0.69
Identities = 8/38 (21%), Positives = 8/38 (21%)
Query: 18 EEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEE 55
EEE E E E E E
Sbjct: 77 EEEGEAEAAAAAEAAPEAPAPEPAPAAAAAAAAAPAAA 114
Score = 28.6 bits (65), Expect = 0.78
Identities = 8/48 (16%), Positives = 8/48 (16%)
Query: 5 EEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEE 52
EEE E E E E E
Sbjct: 77 EEEGEAEAAAAAEAAPEAPAPEPAPAAAAAAAAAPAAAAAPAAPAAAA 124
Score = 28.2 bits (64), Expect = 0.88
Identities = 8/50 (16%), Positives = 8/50 (16%)
Query: 7 EEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEEL 56
EEE E E E E E
Sbjct: 77 EEEGEAEAAAAAEAAPEAPAPEPAPAAAAAAAAAPAAAAAPAAPAAAAAK 126
Score = 27.8 bits (63), Expect = 1.2
Identities = 8/48 (16%), Positives = 8/48 (16%)
Query: 11 EEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEELQA 58
EE E E E E E A
Sbjct: 78 EEGEAEAAAAAEAAPEAPAPEPAPAAAAAAAAAPAAAAAPAAPAAAAA 125
Score = 27.8 bits (63), Expect = 1.5
Identities = 11/51 (21%), Positives = 13/51 (25%)
Query: 23 EEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEELQAGGHGIAICQCKSAKI 73
EEE E + E E E A A +AK
Sbjct: 77 EEEGEAEAAAAAEAAPEAPAPEPAPAAAAAAAAAPAAAAAPAAPAAAAAKA 127
Score = 26.7 bits (60), Expect = 3.4
Identities = 8/49 (16%), Positives = 9/49 (18%)
Query: 11 EEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEELQAG 59
EEE + E E E E A
Sbjct: 77 EEEGEAEAAAAAEAAPEAPAPEPAPAAAAAAAAAPAAAAAPAAPAAAAA 125
Score = 26.3 bits (59), Expect = 4.0
Identities = 6/48 (12%), Positives = 7/48 (14%)
Query: 4 REEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEE 51
EE E + E E E
Sbjct: 77 EEEGEAEAAAAAEAAPEAPAPEPAPAAAAAAAAAPAAAAAPAAPAAAA 124
Score = 25.1 bits (56), Expect = 10.0
Identities = 7/48 (14%), Positives = 8/48 (16%)
Query: 6 EEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEE 53
EEE + E E E E
Sbjct: 77 EEEGEAEAAAAAEAAPEAPAPEPAPAAAAAAAAAPAAAAAPAAPAAAA 124
>gnl|CDD|217756 pfam03839, Sec62, Translocation protein Sec62.
Length = 217
Score = 28.6 bits (64), Expect = 0.70
Identities = 7/52 (13%), Positives = 25/52 (48%)
Query: 2 GKREEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEE 53
K + E + +++ E+ + + E ++ +E++EE+++ ++
Sbjct: 24 NKDKGNPEIYNKINSQDKAIEKFKLLIKAQMAERVKKLHSQEKKEEKKKPKK 75
>gnl|CDD|221490 pfam12253, CAF1A, Chromatin assembly factor 1 subunit A. The
CAF-1 or chromatin assembly factor-1 consists of three
subunits, and this is the first, or A. The A domain is
uniquely required for the progression of S phase in
mouse cells, independent of its ability to promote
histone deposition but dependent on its ability to
interact with HP1 - heterochromatin protein 1-rich
heterochromatin domains next to centromeres that are
crucial for chromosome segregation during mitosis. This
HP1-CAF-1 interaction module functions as a built-in
replication control for heterochromatin, which, like a
control barrier, has an impact on S-phase progression
in addition to DNA-based checkpoints.
Length = 76
Score = 27.2 bits (61), Expect = 0.71
Identities = 14/30 (46%), Positives = 24/30 (80%)
Query: 18 EEEEEEEEEEEDEEEEEEDEEEEEEEEEEE 47
+ E EEEEE ED E E+E++EEE+++++ +
Sbjct: 45 DAEWEEEEEGEDLESEDEEDEEEDDDDDMD 74
Score = 26.8 bits (60), Expect = 1.1
Identities = 15/30 (50%), Positives = 24/30 (80%)
Query: 20 EEEEEEEEEDEEEEEEDEEEEEEEEEEEEE 49
+ E EEEEE E+ E EDEE+EEE+++++ +
Sbjct: 45 DAEWEEEEEGEDLESEDEEDEEEDDDDDMD 74
Score = 26.8 bits (60), Expect = 1.2
Identities = 13/30 (43%), Positives = 24/30 (80%)
Query: 22 EEEEEEEDEEEEEEDEEEEEEEEEEEEEEE 51
+ E EEE+E E+ E E+EE+EEE+++++ +
Sbjct: 45 DAEWEEEEEGEDLESEDEEDEEEDDDDDMD 74
Score = 26.8 bits (60), Expect = 1.3
Identities = 14/30 (46%), Positives = 24/30 (80%)
Query: 12 EEEKEEEEEEEEEEEEEDEEEEEEDEEEEE 41
+ E EEEEE E+ E E++E+EEE+D+++ +
Sbjct: 45 DAEWEEEEEGEDLESEDEEDEEEDDDDDMD 74
Score = 26.4 bits (59), Expect = 1.4
Identities = 14/32 (43%), Positives = 24/32 (75%)
Query: 25 EEEEDEEEEEEDEEEEEEEEEEEEEEEEEEEL 56
+ E +EEEE ED E E+EE+EEE+++++ +
Sbjct: 45 DAEWEEEEEGEDLESEDEEDEEEDDDDDMDGF 76
Score = 26.4 bits (59), Expect = 1.4
Identities = 14/31 (45%), Positives = 24/31 (77%)
Query: 6 EEEEKEEEEKEEEEEEEEEEEEEDEEEEEED 36
+ E +EEEE E+ E E+EE+EEED++++ +
Sbjct: 45 DAEWEEEEEGEDLESEDEEDEEEDDDDDMDG 75
Score = 26.4 bits (59), Expect = 1.4
Identities = 15/30 (50%), Positives = 24/30 (80%)
Query: 17 EEEEEEEEEEEEDEEEEEEDEEEEEEEEEE 46
+ E EEEEE E+ E E+EEDEEE+++++ +
Sbjct: 45 DAEWEEEEEGEDLESEDEEDEEEDDDDDMD 74
Score = 26.4 bits (59), Expect = 1.4
Identities = 13/29 (44%), Positives = 23/29 (79%)
Query: 16 EEEEEEEEEEEEEDEEEEEEDEEEEEEEE 44
E EEEEE E+ E E+EE+E+E+++++ +
Sbjct: 46 AEWEEEEEGEDLESEDEEDEEEDDDDDMD 74
Score = 26.4 bits (59), Expect = 1.6
Identities = 12/30 (40%), Positives = 24/30 (80%)
Query: 16 EEEEEEEEEEEEEDEEEEEEDEEEEEEEEE 45
+ E EEEEE E+ + E+EE++EE+++++ +
Sbjct: 45 DAEWEEEEEGEDLESEDEEDEEEDDDDDMD 74
Score = 26.0 bits (58), Expect = 2.2
Identities = 12/30 (40%), Positives = 24/30 (80%)
Query: 23 EEEEEEDEEEEEEDEEEEEEEEEEEEEEEE 52
+ E EE+EE E+ + E+EE+EEE+++++ +
Sbjct: 45 DAEWEEEEEGEDLESEDEEDEEEDDDDDMD 74
Score = 25.3 bits (56), Expect = 3.9
Identities = 12/30 (40%), Positives = 24/30 (80%)
Query: 21 EEEEEEEEDEEEEEEDEEEEEEEEEEEEEE 50
+ E EEEE+ E+ E ++EE+EEE+++++ +
Sbjct: 45 DAEWEEEEEGEDLESEDEEDEEEDDDDDMD 74
Score = 25.3 bits (56), Expect = 4.1
Identities = 13/30 (43%), Positives = 24/30 (80%)
Query: 11 EEEEKEEEEEEEEEEEEEDEEEEEEDEEEE 40
+ E +EEEE E+ E E+E++EEE++D++ +
Sbjct: 45 DAEWEEEEEGEDLESEDEEDEEEDDDDDMD 74
Score = 25.3 bits (56), Expect = 4.3
Identities = 12/30 (40%), Positives = 24/30 (80%)
Query: 19 EEEEEEEEEEDEEEEEEDEEEEEEEEEEEE 48
+ E EEEEE ++ E E++E+EEE+++++ +
Sbjct: 45 DAEWEEEEEGEDLESEDEEDEEEDDDDDMD 74
Score = 25.3 bits (56), Expect = 4.5
Identities = 13/30 (43%), Positives = 24/30 (80%)
Query: 24 EEEEEDEEEEEEDEEEEEEEEEEEEEEEEE 53
+ E E+EEE E+ E E+EE+EEE+++++ +
Sbjct: 45 DAEWEEEEEGEDLESEDEEDEEEDDDDDMD 74
Score = 24.9 bits (55), Expect = 5.1
Identities = 15/30 (50%), Positives = 24/30 (80%)
Query: 13 EEKEEEEEEEEEEEEEDEEEEEEDEEEEEE 42
+ + EEEEE E+ E EDEE+EEED++++ +
Sbjct: 45 DAEWEEEEEGEDLESEDEEDEEEDDDDDMD 74
Score = 24.5 bits (54), Expect = 7.4
Identities = 13/26 (50%), Positives = 22/26 (84%)
Query: 5 EEEEEKEEEEKEEEEEEEEEEEEEDE 30
EEEEE E+ E E+EE+EEE+++++ +
Sbjct: 49 EEEEEGEDLESEDEEDEEEDDDDDMD 74
Score = 24.1 bits (53), Expect = 9.5
Identities = 12/30 (40%), Positives = 24/30 (80%)
Query: 14 EKEEEEEEEEEEEEEDEEEEEEDEEEEEEE 43
+ E EEEEE E+ E ++EE+EE++++++ +
Sbjct: 45 DAEWEEEEEGEDLESEDEEDEEEDDDDDMD 74
>gnl|CDD|227519 COG5192, BMS1, GTP-binding protein required for 40S ribosome
biogenesis [Translation, ribosomal structure and
biogenesis].
Length = 1077
Score = 28.6 bits (63), Expect = 0.73
Identities = 17/53 (32%), Positives = 27/53 (50%)
Query: 5 EEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEELQ 57
E E E+ +KEE E EE D E+++ D EE+ + EE+ + E +
Sbjct: 640 ETEREENARKKEELRGNFELEERGDPEKKDVDWYTEEKRKIEEQLKINRSEFE 692
Score = 27.4 bits (60), Expect = 2.3
Identities = 17/53 (32%), Positives = 29/53 (54%)
Query: 5 EEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEELQ 57
+E E E+EE ++EE E EE D E+++ + EE+ + EE+L+
Sbjct: 633 SADEVDYETEREENARKKEELRGNFELEERGDPEKKDVDWYTEEKRKIEEQLK 685
Score = 26.2 bits (57), Expect = 4.5
Identities = 15/52 (28%), Positives = 27/52 (51%)
Query: 3 KREEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEE 54
+REE K+EE + E EE + E+ + + +E+ + EE+ + E E
Sbjct: 642 EREENARKKEELRGNFELEERGDPEKKDVDWYTEEKRKIEEQLKINRSEFET 693
Score = 25.9 bits (56), Expect = 6.1
Identities = 18/57 (31%), Positives = 27/57 (47%)
Query: 2 GKREEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEELQA 58
G+ E ++ E+ E+ E+EE + E EE E EE +E + E E E A
Sbjct: 591 GEEELIQDDEKGNFEDLEDEENSSDNEMEESRGSSVTAENEESADEVDYETEREENA 647
Score = 25.9 bits (56), Expect = 8.0
Identities = 18/52 (34%), Positives = 23/52 (44%)
Query: 6 EEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEELQ 57
E+ E EE + E EE E EE DE + E E EE ++EE
Sbjct: 605 EDLEDEENSSDNEMEESRGSSVTAENEESADEVDYETEREENARKKEELRGN 656
>gnl|CDD|235229 PRK04156, gltX, glutamyl-tRNA synthetase; Provisional.
Length = 567
Score = 28.7 bits (65), Expect = 0.74
Identities = 21/55 (38%), Positives = 28/55 (50%)
Query: 1 MGKREEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEE 55
MG+ E K +E +E EE EE+ E EE E EEEEE++EE+
Sbjct: 34 MGENPELRSKAKEIIPIVKEVVEEVNSLSLEEQRERLEELAPELLEEEEEKKEEK 88
Score = 27.1 bits (61), Expect = 2.5
Identities = 16/46 (34%), Positives = 22/46 (47%)
Query: 8 EEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEE 53
EE EE+ E EE E EEEEE +EE++ E+ +
Sbjct: 56 EEVNSLSLEEQRERLEELAPELLEEEEEKKEEKKGLPPLPNAEKGK 101
Score = 26.4 bits (59), Expect = 4.9
Identities = 16/49 (32%), Positives = 24/49 (48%)
Query: 7 EEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEE 55
+E EE EE+ E EE E EE+EE++EE++ E+
Sbjct: 52 KEVVEEVNSLSLEEQRERLEELAPELLEEEEEKKEEKKGLPPLPNAEKG 100
Score = 26.0 bits (58), Expect = 5.3
Identities = 12/39 (30%), Positives = 21/39 (53%)
Query: 5 EEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEE 43
EE+ + EE E EEEEE++E+++ E+ +
Sbjct: 63 LEEQRERLEELAPELLEEEEEKKEEKKGLPPLPNAEKGK 101
Score = 25.6 bits (57), Expect = 7.7
Identities = 13/41 (31%), Positives = 21/41 (51%)
Query: 1 MGKREEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEE 41
+ E+ E EE E EEEEE++EE+ + E+ +
Sbjct: 61 LSLEEQRERLEELAPELLEEEEEKKEEKKGLPPLPNAEKGK 101
Score = 25.2 bits (56), Expect = 9.5
Identities = 13/39 (33%), Positives = 20/39 (51%)
Query: 7 EEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEE 45
EE+ E +E E EEEEE+ EE++ E+ +
Sbjct: 63 LEEQRERLEELAPELLEEEEEKKEEKKGLPPLPNAEKGK 101
>gnl|CDD|202833 pfam03962, Mnd1, Mnd1 family. This family of proteins includes
MND1 from S. cerevisiae. The mnd1 protein forms a
complex with hop2 to promote homologous chromosome
pairing and meiotic double-strand break repair.
Length = 188
Score = 28.4 bits (64), Expect = 0.78
Identities = 18/55 (32%), Positives = 32/55 (58%)
Query: 3 KREEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEELQ 57
K + EK ++E EE ++ E + + E+ ++ EE EE E EE ++ E+EL+
Sbjct: 66 KLKTRLEKLKKELEELKQRIAELQAQIEKLKKGREETEERTELLEELKQLEKELK 120
Score = 27.6 bits (62), Expect = 1.2
Identities = 19/55 (34%), Positives = 34/55 (61%)
Query: 4 REEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEELQA 58
R E+ +KE EE ++ E + + E+ ++ EE EE E EE ++ E+E ++L+A
Sbjct: 70 RLEKLKKELEELKQRIAELQAQIEKLKKGREETEERTELLEELKQLEKELKKLKA 124
Score = 27.6 bits (62), Expect = 1.2
Identities = 15/54 (27%), Positives = 32/54 (59%)
Query: 5 EEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEELQA 58
++E E+ ++ E + + E+ ++ EE EE E EE ++ E+E ++ + EL+
Sbjct: 75 KKELEELKQRIAELQAQIEKLKKGREETEERTELLEELKQLEKELKKLKAELEK 128
>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau;
Validated.
Length = 824
Score = 28.4 bits (64), Expect = 0.81
Identities = 14/43 (32%), Positives = 20/43 (46%)
Query: 16 EEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEELQA 58
EEEE E++ ++E+ + EE E EEEL A
Sbjct: 773 APPPSPPSEEEEMAEDDAPSMDDEDRRDAEEVAMELLEEELGA 815
Score = 25.3 bits (56), Expect = 8.5
Identities = 14/48 (29%), Positives = 18/48 (37%)
Query: 6 EEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEE 53
EEEE ED+ +DE+ + EE E EEE
Sbjct: 765 APAAAPAAAPPPSPPSEEEEMAEDDAPSMDDEDRRDAEEVAMELLEEE 812
>gnl|CDD|225288 COG2433, COG2433, Uncharacterized conserved protein [Function
unknown].
Length = 652
Score = 28.5 bits (64), Expect = 0.87
Identities = 19/58 (32%), Positives = 28/58 (48%)
Query: 1 MGKREEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEELQA 58
G E + +E+E E+E EEEE E ++ ++ EE E EEE EL+
Sbjct: 386 RGYPLAEALSKVKEEERPREKEGTEEEERREITVYEKRIKKLEETVERLEEENSELKR 443
Score = 27.4 bits (61), Expect = 2.2
Identities = 20/52 (38%), Positives = 27/52 (51%)
Query: 4 REEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEE 55
+ +EE+ EKE EEEE E E+ ++ EE E EEE E + E E
Sbjct: 395 SKVKEEERPREKEGTEEEERREITVYEKRIKKLEETVERLEEENSELKRELE 446
>gnl|CDD|240388 PTZ00372, PTZ00372, endonuclease 4-like protein; Provisional.
Length = 413
Score = 28.1 bits (63), Expect = 0.90
Identities = 10/56 (17%), Positives = 32/56 (57%)
Query: 3 KREEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEELQA 58
EEE + +++++E++ E +++ E+ +++++E++E + E E + +
Sbjct: 40 STFSEEENKVATTSTKKDKKEDKNNESKKKSEKKKKKKKEKKEPKSEGETKLGFKT 95
Score = 26.6 bits (59), Expect = 3.4
Identities = 11/55 (20%), Positives = 31/55 (56%)
Query: 3 KREEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEELQ 57
+E EEE + +++++ED+ E + + E+++++++E++E + E
Sbjct: 35 SKEILSTFSEEENKVATTSTKKDKKEDKNNESKKKSEKKKKKKKEKKEPKSEGET 89
>gnl|CDD|223497 COG0420, SbcD, DNA repair exonuclease [DNA replication,
recombination, and repair].
Length = 390
Score = 28.3 bits (63), Expect = 0.92
Identities = 21/53 (39%), Positives = 24/53 (45%)
Query: 3 KREEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEE 55
EE E E EE E + EE EE +E D E EEE E EE E +
Sbjct: 336 LAEEPESSELEELLSELDVEEAFEELLADEVLLDRESEEELEAALEELLELLD 388
Score = 26.7 bits (59), Expect = 3.6
Identities = 19/62 (30%), Positives = 24/62 (38%), Gaps = 6/62 (9%)
Query: 3 KREEEEEKEEEEKEEEEEE------EEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEEL 56
E + EE + E EE EE EE +E + E EEE E EE E
Sbjct: 329 LEERATDLAEEPESSELEELLSELDVEEAFEELLADEVLLDRESEEELEAALEELLELLD 388
Query: 57 QA 58
+
Sbjct: 389 EG 390
>gnl|CDD|185562 PTZ00335, PTZ00335, tubulin alpha chain; Provisional.
Length = 448
Score = 28.1 bits (63), Expect = 0.93
Identities = 16/39 (41%), Positives = 19/39 (48%)
Query: 15 KEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEE 53
E EE E E ED E+D EE E +EE EE+
Sbjct: 410 GEGMEEGEFSEAREDLAALEKDYEEVGAESADEEGEEDV 448
Score = 25.8 bits (57), Expect = 7.3
Identities = 14/38 (36%), Positives = 19/38 (50%), Gaps = 4/38 (10%)
Query: 13 EEKEEEEEEEEEEE----EEDEEEEEEDEEEEEEEEEE 46
E EE E E E+ E+D EE + +EE EE+
Sbjct: 411 EGMEEGEFSEAREDLAALEKDYEEVGAESADEEGEEDV 448
>gnl|CDD|204414 pfam10211, Ax_dynein_light, Axonemal dynein light chain. Axonemal
dynein light chain proteins play a dynamic role in
flagellar and cilia motility. Eukaryotic cilia and
flagella are complex organelles consisting of a core
structure, the axoneme, which is composed of nine
microtubule doublets forming a cylinder that surrounds a
pair of central singlet microtubules. This
ultra-structural arrangement seems to be one of the most
stable micro-tubular assemblies known and is responsible
for the flagellar and ciliary movement of a large number
of organisms ranging from protozoan to mammals. This
light chain interacts directly with the N-terminal half
of the heavy chains.
Length = 189
Score = 27.9 bits (63), Expect = 0.94
Identities = 22/58 (37%), Positives = 33/58 (56%)
Query: 1 MGKREEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEELQA 58
GK E E+E ++ E+E+EE E+ E E + E E EEEE + EE+ +E L+
Sbjct: 120 QGKSELEQEIKKLEEEKEELEKRVAELEAKLEAIEKREEEERQIEEKRHADEIAFLKK 177
Score = 27.2 bits (61), Expect = 1.7
Identities = 21/53 (39%), Positives = 31/53 (58%)
Query: 5 EEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEELQ 57
+ E+ K E E+E ++ EEE+EE E E E + E E+ EEEE + EE+
Sbjct: 117 QAEQGKSELEQEIKKLEEEKEELEKRVAELEAKLEAIEKREEEERQIEEKRHA 169
Score = 26.0 bits (58), Expect = 4.3
Identities = 20/53 (37%), Positives = 33/53 (62%)
Query: 3 KREEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEE 55
++ + E+ + E E+E ++ EEE+EE E+ E E + E E+ EEEE + EE
Sbjct: 113 RKALQAEQGKSELEQEIKKLEEEKEELEKRVAELEAKLEAIEKREEEERQIEE 165
Score = 26.0 bits (58), Expect = 5.1
Identities = 19/51 (37%), Positives = 32/51 (62%)
Query: 3 KREEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEE 53
+ E+ + + E+E ++ EEE+EE E+ E E + E E+ EEEE + EE+
Sbjct: 117 QAEQGKSELEQEIKKLEEEKEELEKRVAELEAKLEAIEKREEEERQIEEKR 167
Score = 26.0 bits (58), Expect = 5.2
Identities = 20/58 (34%), Positives = 35/58 (60%)
Query: 1 MGKREEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEELQA 58
M K + E+ + E ++E ++ EEE+EE ++ E + + E E+ EEEE + EE+ A
Sbjct: 112 MRKALQAEQGKSELEQEIKKLEEEKEELEKRVAELEAKLEAIEKREEEERQIEEKRHA 169
>gnl|CDD|130727 TIGR01666, YCCS, TIGR01666 family membrane protein. This model
represents a clade of sequences from gamma and beta
proteobacteria. These proteins are >700 amino acids long
and many have been annotated as putative membrane
proteins. The gene from Salmonella has been annotated as
a putative efflux transporter. The gene from E. coli has
the name yccS [Cell envelope, Other].
Length = 704
Score = 28.3 bits (63), Expect = 0.95
Identities = 11/38 (28%), Positives = 16/38 (42%)
Query: 19 EEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEEL 56
E EE E +++E E E ++E EE L
Sbjct: 645 EHIEEIPEAIFNQQQESIETLELRKQEMTAEERAVFSL 682
>gnl|CDD|237538 PRK13876, PRK13876, conjugal transfer coupling protein TraG;
Provisional.
Length = 663
Score = 28.4 bits (64), Expect = 0.97
Identities = 6/46 (13%), Positives = 20/46 (43%)
Query: 7 EEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEE 52
+ + + + + E E +E E E E + +++++++
Sbjct: 590 DGDDDGDPDNGGIRRQPELPEHEEIVPEPRPPENEFDLLDDDDDDD 635
Score = 28.4 bits (64), Expect = 1.0
Identities = 7/42 (16%), Positives = 18/42 (42%)
Query: 16 EEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEELQ 57
+ + + E E EE E E E + +++++++
Sbjct: 596 DPDNGGIRRQPELPEHEEIVPEPRPPENEFDLLDDDDDDDAA 637
Score = 28.0 bits (63), Expect = 1.1
Identities = 8/37 (21%), Positives = 18/37 (48%)
Query: 5 EEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEE 41
++ E E EE E E+E + +D+++++
Sbjct: 599 NGGIRRQPELPEHEEIVPEPRPPENEFDLLDDDDDDD 635
Score = 28.0 bits (63), Expect = 1.4
Identities = 8/33 (24%), Positives = 18/33 (54%)
Query: 3 KREEEEEKEEEEKEEEEEEEEEEEEEDEEEEEE 35
+R+ E + EE E E E + D++++++
Sbjct: 603 RRQPELPEHEEIVPEPRPPENEFDLLDDDDDDD 635
Score = 27.6 bits (62), Expect = 1.9
Identities = 7/40 (17%), Positives = 17/40 (42%)
Query: 16 EEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEE 55
+ + + E E EE E E E + ++++++
Sbjct: 595 GDPDNGGIRRQPELPEHEEIVPEPRPPENEFDLLDDDDDD 634
Score = 27.2 bits (61), Expect = 2.1
Identities = 10/35 (28%), Positives = 18/35 (51%)
Query: 2 GKREEEEEKEEEEKEEEEEEEEEEEEEDEEEEEED 36
G R + E E EE E E E + ++++++D
Sbjct: 601 GIRRQPELPEHEEIVPEPRPPENEFDLLDDDDDDD 635
Score = 27.2 bits (61), Expect = 2.1
Identities = 8/45 (17%), Positives = 21/45 (46%)
Query: 2 GKREEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEE 46
G + + + ++ E E EE E E E + +++++++
Sbjct: 591 GDDDGDPDNGGIRRQPELPEHEEIVPEPRPPENEFDLLDDDDDDD 635
Score = 27.2 bits (61), Expect = 2.1
Identities = 7/51 (13%), Positives = 21/51 (41%)
Query: 8 EEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEELQA 58
+ ++ + + + E E EE E E E + +++++++
Sbjct: 590 DGDDDGDPDNGGIRRQPELPEHEEIVPEPRPPENEFDLLDDDDDDDAARPR 640
>gnl|CDD|218177 pfam04615, Utp14, Utp14 protein. This protein is found to be part
of a large ribonucleoprotein complex containing the U3
snoRNA. Depletion of the Utp proteins impedes production
of the 18S rRNA, indicating that they are part of the
active pre-rRNA processing complex. This large RNP
complex has been termed the small subunit (SSU)
processome.
Length = 728
Score = 28.1 bits (63), Expect = 0.99
Identities = 21/55 (38%), Positives = 27/55 (49%)
Query: 5 EEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEELQAG 59
+EE K + E ++EE D E EE E E EEE +EEE EE + G
Sbjct: 367 DEENSGLLSMKFMQRAEARKKEENDAEIEELRRELEGEEESDEEENEEPSKKNVG 421
Score = 25.8 bits (57), Expect = 7.5
Identities = 23/57 (40%), Positives = 37/57 (64%)
Query: 3 KREEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEELQAG 59
K E +E+KE +E+EE E+EEE + E+ + + E+ ++EEEEEE +EE L+
Sbjct: 444 KNEFKEKKESDEEEELEDEEEAKVEKVANKLLKRSEKAQKEEEEEELDEENPWLKTT 500
Score = 25.4 bits (56), Expect = 9.8
Identities = 21/53 (39%), Positives = 35/53 (66%)
Query: 3 KREEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEE 55
K+E + E +E+++ +EEEE E+EEE E+ + E+ ++EEEEEE +E
Sbjct: 440 KKENKNEFKEKKESDEEEELEDEEEAKVEKVANKLLKRSEKAQKEEEEEELDE 492
>gnl|CDD|215628 PLN03196, PLN03196, MOC1-like protein; Provisional.
Length = 487
Score = 28.1 bits (63), Expect = 1.0
Identities = 10/43 (23%), Positives = 21/43 (48%)
Query: 8 EEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEE 50
E++ + E EE E + E E +EE++++++E
Sbjct: 436 EQRMSGDFIEGEEMEPLFSMGGKLEMPGSESVSDEEDDDDDDE 478
Score = 27.4 bits (61), Expect = 1.7
Identities = 10/47 (21%), Positives = 22/47 (46%)
Query: 13 EEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEELQAG 59
E++ + E EE E + E E +EE++++++E+
Sbjct: 436 EQRMSGDFIEGEEMEPLFSMGGKLEMPGSESVSDEEDDDDDDEVLYR 482
Score = 27.4 bits (61), Expect = 1.8
Identities = 11/49 (22%), Positives = 24/49 (48%)
Query: 8 EEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEEL 56
++K E+ + E EE E + + E +EE++++++E L
Sbjct: 432 DDKFEQRMSGDFIEGEEMEPLFSMGGKLEMPGSESVSDEEDDDDDDEVL 480
Score = 26.6 bits (59), Expect = 3.1
Identities = 10/34 (29%), Positives = 17/34 (50%)
Query: 5 EEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEE 38
E EE + + E E DEE++++D+E
Sbjct: 445 EGEEMEPLFSMGGKLEMPGSESVSDEEDDDDDDE 478
Score = 25.8 bits (57), Expect = 6.2
Identities = 10/34 (29%), Positives = 17/34 (50%)
Query: 6 EEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEE 39
E EE E + E E +EE+++D++E
Sbjct: 445 EGEEMEPLFSMGGKLEMPGSESVSDEEDDDDDDE 478
Score = 25.4 bits (56), Expect = 8.3
Identities = 9/34 (26%), Positives = 17/34 (50%)
Query: 7 EEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEE 40
E E+ E + E E +EE++D+++E
Sbjct: 445 EGEEMEPLFSMGGKLEMPGSESVSDEEDDDDDDE 478
>gnl|CDD|215275 PLN02498, PLN02498, omega-3 fatty acid desaturase.
Length = 450
Score = 28.3 bits (63), Expect = 1.0
Identities = 11/23 (47%), Positives = 13/23 (56%)
Query: 37 EEEEEEEEEEEEEEEEEEELQAG 59
EEEE+EE E+EE E G
Sbjct: 75 EEEEDEEGVNGVGEDEEGEFDPG 97
>gnl|CDD|217956 pfam04194, PDCD2_C, Programmed cell death protein 2, C-terminal
putative domain.
Length = 165
Score = 27.8 bits (62), Expect = 1.0
Identities = 17/51 (33%), Positives = 24/51 (47%)
Query: 12 EEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEELQAGGHG 62
EE+E E EE EE E + EE E+E +E+EE +E +
Sbjct: 8 PEEEEYETLHAPSLPEEPEEREIDAFEELEKEGGGGKEDEETDESEKAKSD 58
Score = 26.6 bits (59), Expect = 2.9
Identities = 18/44 (40%), Positives = 22/44 (50%)
Query: 6 EEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEE 49
EEE+ E EE EE E D EE E E +E+EE +E
Sbjct: 8 PEEEEYETLHAPSLPEEPEEREIDAFEELEKEGGGGKEDEETDE 51
>gnl|CDD|223945 COG1013, PorB, Pyruvate:ferredoxin oxidoreductase and related
2-oxoacid:ferredoxin oxidoreductases, beta subunit
[Energy production and conversion].
Length = 294
Score = 28.0 bits (63), Expect = 1.1
Identities = 10/43 (23%), Positives = 18/43 (41%)
Query: 2 GKREEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEE 44
G EE E E+ + + E + +++ DE EE +
Sbjct: 250 GIFYPVEEYLEYEERFKHLTKSNPELIQKLQKDVDERWEELKR 292
Score = 27.3 bits (61), Expect = 1.8
Identities = 15/55 (27%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
Query: 2 GKREEEEEKEEEEKEEEEEEEEEE-EEEDEEEEEEDEEEEEEEEEEEEEEEEEEE 55
GK EEE+ K+ EE E EE + + + E ++ +++ +E EE +
Sbjct: 237 GKAEEEKGKDIPIGIFYPVEEYLEYEERFKHLTKSNPELIQKLQKDVDERWEELK 291
Score = 26.9 bits (60), Expect = 2.3
Identities = 9/40 (22%), Positives = 19/40 (47%)
Query: 10 KEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEE 49
EE E EE + + + E ++ +++ +E EE +
Sbjct: 253 YPVEEYLEYEERFKHLTKSNPELIQKLQKDVDERWEELKR 292
Score = 26.5 bits (59), Expect = 3.4
Identities = 15/59 (25%), Positives = 26/59 (44%), Gaps = 5/59 (8%)
Query: 4 REEEEEKEEEEKEEEEEEEEEEEEEDEEEEEE-----DEEEEEEEEEEEEEEEEEEELQ 57
R E + EEE+ ++ EE E EE E ++ +++ +E EEL+
Sbjct: 233 RYEPGKAEEEKGKDIPIGIFYPVEEYLEYEERFKHLTKSNPELIQKLQKDVDERWEELK 291
>gnl|CDD|173502 PTZ00266, PTZ00266, NIMA-related protein kinase; Provisional.
Length = 1021
Score = 28.2 bits (62), Expect = 1.1
Identities = 20/53 (37%), Positives = 25/53 (47%)
Query: 3 KREEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEE 55
KR E E+EE E+ E E E E E E E E E E + E + + E E
Sbjct: 458 KRIERLEREERERLERERMERIERERLERERLERERLERDRLERDRLDRLERE 510
Score = 26.2 bits (57), Expect = 5.1
Identities = 20/56 (35%), Positives = 25/56 (44%)
Query: 2 GKREEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEELQ 57
R+ E K E+K E E EE E + E E E E E E E E E + L+
Sbjct: 445 AHRKALEMKILEKKRIERLEREERERLERERMERIERERLERERLERERLERDRLE 500
Score = 26.2 bits (57), Expect = 5.9
Identities = 18/47 (38%), Positives = 22/47 (46%)
Query: 9 EKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEE 55
EK+ E+ E EE E E E E E E E E E E E + E +
Sbjct: 456 EKKRIERLEREERERLERERMERIERERLERERLERERLERDRLERD 502
Score = 25.5 bits (55), Expect = 9.1
Identities = 18/49 (36%), Positives = 22/49 (44%)
Query: 8 EEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEEL 56
E+K E E EE E E E + E E E E E E E + E + L
Sbjct: 456 EKKRIERLEREERERLERERMERIERERLERERLERERLERDRLERDRL 504
Score = 25.5 bits (55), Expect = 9.3
Identities = 17/53 (32%), Positives = 25/53 (47%)
Query: 3 KREEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEE 55
+R E EE+E E+E E E E E + E E E + E + + E E +
Sbjct: 461 ERLEREERERLERERMERIERERLERERLERERLERDRLERDRLDRLERERVD 513
>gnl|CDD|130366 TIGR01299, synapt_SV2, synaptic vesicle protein SV2. This model
describes a tightly conserved subfamily of the larger
family of sugar (and other) transporters described by
PFAM model pfam00083. Members of this subfamily include
closely related forms SV2A and SV2B of synaptic vesicle
protein from vertebrates and a more distantly related
homolog (below trusted cutoff) from Drosophila
melanogaster. Members are predicted to have two sets of
six transmembrane helices.
Length = 742
Score = 28.0 bits (62), Expect = 1.1
Identities = 14/50 (28%), Positives = 25/50 (50%)
Query: 4 REEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEE 53
R E+E+ +++ + E +DEEE E + E +E++E E E
Sbjct: 48 RFEDEDDDDDFPAPADGYSRGEAADDEEEGEASSDATEGHDEDDEIYEGE 97
Score = 28.0 bits (62), Expect = 1.4
Identities = 14/62 (22%), Positives = 30/62 (48%), Gaps = 11/62 (17%)
Query: 9 EKEEEEKEEEEEEEEEEEEEDEE-----------EEEEDEEEEEEEEEEEEEEEEEEELQ 57
++ ++E + E+E++D++ E +DEEE E + E +E++E+
Sbjct: 35 DRAQDEYSQRSYSRFEDEDDDDDFPAPADGYSRGEAADDEEEGEASSDATEGHDEDDEIY 94
Query: 58 AG 59
G
Sbjct: 95 EG 96
Score = 25.7 bits (56), Expect = 8.5
Identities = 13/48 (27%), Positives = 24/48 (50%)
Query: 7 EEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEE 54
E+E ++++ + E D+EEE E + E +E++E E E
Sbjct: 50 EDEDDDDDFPAPADGYSRGEAADDEEEGEASSDATEGHDEDDEIYEGE 97
>gnl|CDD|224212 COG1293, COG1293, Predicted RNA-binding protein homologous to
eukaryotic snRNP [Transcription].
Length = 564
Score = 28.1 bits (63), Expect = 1.2
Identities = 12/53 (22%), Positives = 22/53 (41%)
Query: 3 KREEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEE 55
K+ + + + + E +E E + E+ E ++ EE EE EE
Sbjct: 373 KKLKGAKVNLDRQLSELKEAIAYYESAKTALEKAEGKKAIEEIREELIEEGLL 425
Score = 27.7 bits (62), Expect = 1.7
Identities = 12/52 (23%), Positives = 22/52 (42%)
Query: 2 GKREEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEE 53
G + + + E KE E + ++ E ++ EE EE EE + +
Sbjct: 377 GAKVNLDRQLSELKEAIAYYESAKTALEKAEGKKAIEEIREELIEEGLLKSK 428
Score = 27.4 bits (61), Expect = 2.1
Identities = 15/56 (26%), Positives = 35/56 (62%)
Query: 3 KREEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEELQA 58
++ E ++ ++ E E++ E+E ++ + + E++++E EE E+ EE ++ E L A
Sbjct: 273 EKFERDKIKQLASELEKKLEKELKKLENKLEKQEDELEELEKAAEELRQKGELLYA 328
Score = 27.0 bits (60), Expect = 2.3
Identities = 13/51 (25%), Positives = 22/51 (43%)
Query: 7 EEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEELQ 57
+ K +++ E +E E + E E ++ EE EE EE L+
Sbjct: 376 KGAKVNLDRQLSELKEAIAYYESAKTALEKAEGKKAIEEIREELIEEGLLK 426
Score = 26.6 bits (59), Expect = 3.9
Identities = 11/55 (20%), Positives = 20/55 (36%)
Query: 2 GKREEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEEL 56
K + + + +E E + E+ E + EE EE EE + +
Sbjct: 375 LKGAKVNLDRQLSELKEAIAYYESAKTALEKAEGKKAIEEIREELIEEGLLKSKK 429
Score = 26.2 bits (58), Expect = 5.2
Identities = 11/54 (20%), Positives = 22/54 (40%)
Query: 1 MGKREEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEE 54
+ + +++ E +E E + E+ E + EE EE EE + +
Sbjct: 375 LKGAKVNLDRQLSELKEAIAYYESAKTALEKAEGKKAIEEIREELIEEGLLKSK 428
Score = 25.8 bits (57), Expect = 5.9
Identities = 14/54 (25%), Positives = 34/54 (62%)
Query: 5 EEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEELQA 58
+E+ E+++ ++ E E++ E+E + E + +++E+E EE E+ EE ++ +
Sbjct: 272 DEKFERDKIKQLASELEKKLEKELKKLENKLEKQEDELEELEKAAEELRQKGEL 325
>gnl|CDD|227494 COG5165, POB3, Nucleosome-binding factor SPN, POB3 subunit
[Transcription / DNA replication, recombination, and
repair / Chromatin structure and dynamics].
Length = 508
Score = 28.0 bits (62), Expect = 1.3
Identities = 11/47 (23%), Positives = 20/47 (42%)
Query: 16 EEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEELQAGGHG 62
+ E+ EEDE E+E+ + + + EE + + GG
Sbjct: 457 DSEDINMGSAGEEDESEDEDFQMVSDSDVAEEYDLQAALSDAEGGSD 503
Score = 27.7 bits (61), Expect = 1.7
Identities = 10/43 (23%), Positives = 20/43 (46%)
Query: 9 EKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEE 51
+ E+ EE+E E+E+ + + D EE + + + E
Sbjct: 457 DSEDINMGSAGEEDESEDEDFQMVSDSDVAEEYDLQAALSDAE 499
Score = 26.5 bits (58), Expect = 4.0
Identities = 10/43 (23%), Positives = 19/43 (44%)
Query: 12 EEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEE 54
+ E EE+E EDE+ + + + EE + + + E
Sbjct: 457 DSEDINMGSAGEEDESEDEDFQMVSDSDVAEEYDLQAALSDAE 499
Score = 26.1 bits (57), Expect = 4.8
Identities = 11/51 (21%), Positives = 22/51 (43%)
Query: 5 EEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEE 55
E+ +E+E E+E+ + D + EE + + + E +EE
Sbjct: 458 SEDINMGSAGEEDESEDEDFQMVSDSDVAEEYDLQAALSDAEGGSDEERPS 508
Score = 25.3 bits (55), Expect = 9.9
Identities = 14/56 (25%), Positives = 27/56 (48%)
Query: 3 KREEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEELQA 58
K EE +E + + + E+ EE++ E+E+ + + + EE +LQA
Sbjct: 438 KARNEEVQERLQTDLGSISDSEDINMGSAGEEDESEDEDFQMVSDSDVAEEYDLQA 493
>gnl|CDD|223756 COG0684, MenG, Demethylmenaquinone methyltransferase [Coenzyme
metabolism].
Length = 210
Score = 27.6 bits (62), Expect = 1.3
Identities = 10/40 (25%), Positives = 16/40 (40%)
Query: 31 EEEEEDEEEEEEEEEEEEEEEEEEELQAGGHGIAICQCKS 70
E DE E +E + +E+ E + G I I +
Sbjct: 168 PAELADEVAEAAKEIKAKEDFIREAIAQGRTLIEILPLRK 207
>gnl|CDD|217373 pfam03115, Astro_capsid, Astrovirus capsid protein precursor. This
product is encoded by astrovirus ORF2, one of the three
astrovirus ORFs (1a, 1b, 2). The 87kD precursor protein
undergoes an intracellular cleavage to form a 79kD
protein. Subsequently, extracellular trypsin cleavage
yields the three proteins forming the infectious virion.
Length = 787
Score = 27.8 bits (62), Expect = 1.3
Identities = 13/44 (29%), Positives = 23/44 (52%)
Query: 13 EEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEEL 56
+ + E EE E+ + E+ EE + E+E E+E++EL
Sbjct: 646 QSRAELSGLEERAVEDAPDPYEDLISLEETDTEDESTEDEDDEL 689
>gnl|CDD|130141 TIGR01069, mutS2, MutS2 family protein. Function of MutS2 is
unknown. It should not be considered a DNA mismatch
repair protein. It is likely a DNA mismatch binding
protein of unknown cellular function [DNA metabolism,
Other].
Length = 771
Score = 27.9 bits (62), Expect = 1.3
Identities = 17/49 (34%), Positives = 32/49 (65%)
Query: 3 KREEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEE 51
++E E++ E EK +E+E+ ++E E E EE ++ E ++ E E+E +E
Sbjct: 524 EKELEQKNEHLEKLLKEQEKLKKELEQEMEELKERERNKKLELEKEAQE 572
Score = 27.9 bits (62), Expect = 1.5
Identities = 17/53 (32%), Positives = 32/53 (60%)
Query: 1 MGKREEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEE 53
+ K E++ E++ E E+ +E+E+ +E E+E EE +E E ++ E E+E
Sbjct: 517 IEKLSALEKELEQKNEHLEKLLKEQEKLKKELEQEMEELKERERNKKLELEKE 569
Score = 27.9 bits (62), Expect = 1.5
Identities = 19/53 (35%), Positives = 33/53 (62%)
Query: 6 EEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEELQA 58
EKE E+K E E+ +E+E+ ++E E++ EE +E E ++ E E+E +A
Sbjct: 521 SALEKELEQKNEHLEKLLKEQEKLKKELEQEMEELKERERNKKLELEKEAQEA 573
Score = 25.6 bits (56), Expect = 9.7
Identities = 18/53 (33%), Positives = 32/53 (60%)
Query: 6 EEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEELQA 58
E+ E+E E++ E E+ +E E+ ++E E+E EE +E E ++ E E +A
Sbjct: 518 EKLSALEKELEQKNEHLEKLLKEQEKLKKELEQEMEELKERERNKKLELEKEA 570
>gnl|CDD|218737 pfam05764, YL1, YL1 nuclear protein. The proteins in this family
are designated YL1. These proteins have been shown to
be DNA-binding and may be a transcription factor.
Length = 238
Score = 27.7 bits (62), Expect = 1.4
Identities = 27/51 (52%), Positives = 39/51 (76%)
Query: 7 EEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEELQ 57
EEE+++EE E EEEEEEEE + D ++ E+DE E ++EEE E+E + EE L+
Sbjct: 35 EEEEDDEEFEIEEEEEEEEVDSDFDDSEDDEPESDDEEEGEKELQREERLK 85
Score = 26.6 bits (59), Expect = 3.6
Identities = 26/51 (50%), Positives = 37/51 (72%)
Query: 5 EEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEE 55
EEEE+ EE E EEEEEEEE + + D+ E++E E ++EEE E+E + EE +
Sbjct: 35 EEEEDDEEFEIEEEEEEEEVDSDFDDSEDDEPESDDEEEGEKELQREERLK 85
>gnl|CDD|224340 COG1422, COG1422, Predicted membrane protein [Function unknown].
Length = 201
Score = 27.7 bits (62), Expect = 1.4
Identities = 10/39 (25%), Positives = 25/39 (64%)
Query: 4 REEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEE 42
+E+ +E ++ KE ++E E +E D ++ ++ +E++ E
Sbjct: 71 QEKMKELQKMMKEFQKEFREAQESGDMKKLKKLQEKQME 109
>gnl|CDD|188306 TIGR03319, RNase_Y, ribonuclease Y. Members of this family are
RNase Y, an endoribonuclease. The member from Bacillus
subtilis, YmdA, has been shown to be involved in
turnover of yitJ riboswitch [Transcription, Degradation
of RNA].
Length = 514
Score = 28.0 bits (63), Expect = 1.4
Identities = 20/54 (37%), Positives = 32/54 (59%)
Query: 3 KREEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEEL 56
+ E + K E ++EE E++E+E +E+ DE+EEE EE E+ EE E +
Sbjct: 88 REETLDRKMESLDKKEENLEKKEKELSNKEKNLDEKEEELEELIAEQREELERI 141
Score = 26.4 bits (59), Expect = 3.9
Identities = 18/54 (33%), Positives = 32/54 (59%)
Query: 4 REEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEELQ 57
+ EE + + + +++EE E++E E +E +E+EEE EE E+ EEL+
Sbjct: 86 LQREETLDRKMESLDKKEENLEKKEKELSNKEKNLDEKEEELEELIAEQREELE 139
Score = 25.7 bits (57), Expect = 7.6
Identities = 18/59 (30%), Positives = 31/59 (52%), Gaps = 3/59 (5%)
Query: 2 GKREEEEEKEEEEKEEEEEEEEEEEEE---DEEEEEEDEEEEEEEEEEEEEEEEEEELQ 57
K E + + E E+E +E E + E + EE D + E +++EE E++E+EL
Sbjct: 56 AKEEVHKLRAELERELKERRNELQRLERRLLQREETLDRKMESLDKKEENLEKKEKELS 114
>gnl|CDD|191675 pfam07047, OPA3, Optic atrophy 3 protein (OPA3). This family
consists of several optic atrophy 3 (OPA3) proteins.
OPA3 deficiency causes type III 3-methylglutaconic
aciduria (MGA) in humans. This disease manifests with
early bilateral optic atrophy, spasticity,
extrapyramidal dysfunction, ataxia, and cognitive
deficits, but normal longevity.
Length = 134
Score = 27.2 bits (61), Expect = 1.4
Identities = 12/34 (35%), Positives = 18/34 (52%)
Query: 5 EEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEE 38
+E +KEEE ++E EE E E + E E +
Sbjct: 101 RKEAKKEEELQQELEELEARVGELELEIERQKAR 134
Score = 25.3 bits (56), Expect = 6.6
Identities = 11/38 (28%), Positives = 22/38 (57%)
Query: 3 KREEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEE 40
+R+ +E ++EE+ ++E EE E + E E E ++
Sbjct: 97 QRQSRKEAKKEEELQQELEELEARVGELELEIERQKAR 134
>gnl|CDD|219293 pfam07093, SGT1, SGT1 protein. This family consists of several
eukaryotic SGT1 proteins. Human SGT1 or hSGT1 is known
to suppress GCR2 and is highly expressed in the muscle
and heart. The function of this family is unknown
although it has been speculated that SGT1 may be
functionally analogous to the Gcr2p protein of
Saccharomyces cerevisiae which is known to be a
regulatory factor of glycolytic gene expression.
Length = 557
Score = 27.8 bits (62), Expect = 1.4
Identities = 11/47 (23%), Positives = 29/47 (61%)
Query: 5 EEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEE 51
+E + ++ ++ +E+++E+++EDE+ + EE EE ++ + E
Sbjct: 475 DEIDNDLPDDSDDADEDDDEDDDEDEDSSSDSTLEELEEYMDQMDAE 521
Score = 27.4 bits (61), Expect = 1.8
Identities = 11/40 (27%), Positives = 27/40 (67%)
Query: 17 EEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEEL 56
++ ++ +E+++ED++E+E+ + EE EE ++ + EL
Sbjct: 483 DDSDDADEDDDEDDDEDEDSSSDSTLEELEEYMDQMDAEL 522
Score = 27.0 bits (60), Expect = 2.5
Identities = 11/61 (18%), Positives = 37/61 (60%)
Query: 1 MGKREEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEELQAGG 60
+G +++E + + + ++ +E+++E+++++E+ D EE EE ++ + E ++ +
Sbjct: 470 LGLKDDEIDNDLPDDSDDADEDDDEDDDEDEDSSSDSTLEELEEYMDQMDAELKQTDSSN 529
Query: 61 H 61
+
Sbjct: 530 N 530
Score = 26.2 bits (58), Expect = 4.6
Identities = 12/53 (22%), Positives = 31/53 (58%)
Query: 1 MGKREEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEE 53
M +++E + + ++ +E+++E++DE+E+ + EE EE ++ + E
Sbjct: 469 MLGLKDDEIDNDLPDDSDDADEDDDEDDDEDEDSSSDSTLEELEEYMDQMDAE 521
>gnl|CDD|224337 COG1419, FlhF, Flagellar GTP-binding protein [Cell motility and
secretion].
Length = 407
Score = 27.7 bits (62), Expect = 1.4
Identities = 13/56 (23%), Positives = 25/56 (44%)
Query: 2 GKREEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEELQ 57
K+ E E++ +E ++ EE + +E+ E EE E ++E+Q
Sbjct: 94 AKKIERSTPSLIERKTQEVKDSGEEIAEMMRDEKVPIRELEEIPPEFVALYKQEIQ 149
>gnl|CDD|217861 pfam04050, Upf2, Up-frameshift suppressor 2. Transcripts
harbouring premature signals for translation
termination are recognised and rapidly degraded by
eukaryotic cells through a pathway known as
nonsense-mediated mRNA decay. In Saccharomyces
cerevisiae, three trans-acting factors (Upf1 to Upf3)
are required for nonsense-mediated mRNA decay.
Length = 171
Score = 27.3 bits (61), Expect = 1.4
Identities = 22/54 (40%), Positives = 37/54 (68%)
Query: 5 EEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEELQA 58
EE+EE EE++++E +EEE + D+E++EE + EEE+ +EEE + E +A
Sbjct: 11 EEDEELPEEDEDDESSDEEEVDLPDDEQDEESDSEEEQIFVTRQEEEVDPEAEA 64
Score = 26.6 bits (59), Expect = 2.9
Identities = 20/53 (37%), Positives = 32/53 (60%)
Query: 5 EEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEELQ 57
E EE E++E +EEE + ++E+DEE + E+E+ +EEE + E E E
Sbjct: 15 ELPEEDEDDESSDEEEVDLPDDEQDEESDSEEEQIFVTRQEEEVDPEAEAEFD 67
Score = 26.6 bits (59), Expect = 3.0
Identities = 19/54 (35%), Positives = 35/54 (64%)
Query: 2 GKREEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEE 55
G+ +EE +E+E+ E +EEE + +++++EE + EEE+ +EEE + E E
Sbjct: 10 GEEDEELPEEDEDDESSDEEEVDLPDDEQDEESDSEEEQIFVTRQEEEVDPEAE 63
Score = 26.2 bits (58), Expect = 3.7
Identities = 21/51 (41%), Positives = 34/51 (66%)
Query: 4 REEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEE 54
++ EE EE +E+E++E +EEE D ++E+DEE + EEE+ +EEE
Sbjct: 7 SDDGEEDEELPEEDEDDESSDEEEVDLPDDEQDEESDSEEEQIFVTRQEEE 57
Score = 26.2 bits (58), Expect = 4.0
Identities = 18/51 (35%), Positives = 34/51 (66%)
Query: 6 EEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEEL 56
E E ++ EE+EE EE+E+++ +EEE + ++E++EE + EEE+ +
Sbjct: 1 SGSESESDDGEEDEELPEEDEDDESSDEEEVDLPDDEQDEESDSEEEQIFV 51
Score = 25.8 bits (57), Expect = 4.8
Identities = 19/53 (35%), Positives = 35/53 (66%)
Query: 5 EEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEELQ 57
++ E++EE EE+E++E +EEE + ++E +EE + EEE+ +EEE+
Sbjct: 7 SDDGEEDEELPEEDEDDESSDEEEVDLPDDEQDEESDSEEEQIFVTRQEEEVD 59
Score = 25.8 bits (57), Expect = 5.1
Identities = 18/52 (34%), Positives = 35/52 (67%)
Query: 6 EEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEELQ 57
E ++ EE+E+ EE+E++E +E+E + +DE++EE + EEE+ +E +
Sbjct: 6 ESDDGEEDEELPEEDEDDESSDEEEVDLPDDEQDEESDSEEEQIFVTRQEEE 57
Score = 25.4 bits (56), Expect = 7.1
Identities = 20/50 (40%), Positives = 31/50 (62%)
Query: 5 EEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEE 54
E E + EE EE EE+E++E DEEE + ++E++EE + EEE+
Sbjct: 3 SESESDDGEEDEELPEEDEDDESSDEEEVDLPDDEQDEESDSEEEQIFVT 52
Score = 25.0 bits (55), Expect = 9.3
Identities = 18/51 (35%), Positives = 32/51 (62%)
Query: 5 EEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEE 55
EE+E+ E ++EE + ++E++EE + EEE+ +EEE + E E E +
Sbjct: 18 EEDEDDESSDEEEVDLPDDEQDEESDSEEEQIFVTRQEEEVDPEAEAEFDR 68
Score = 25.0 bits (55), Expect = 9.7
Identities = 18/55 (32%), Positives = 37/55 (67%)
Query: 4 REEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEELQA 58
+ EE++E E++E++E +EEE + ++E+++E + EEE+ +EEE + +A
Sbjct: 8 DDGEEDEELPEEDEDDESSDEEEVDLPDDEQDEESDSEEEQIFVTRQEEEVDPEA 62
>gnl|CDD|215283 PLN02518, PLN02518, pheophorbide a oxygenase.
Length = 539
Score = 27.9 bits (62), Expect = 1.4
Identities = 7/26 (26%), Positives = 15/26 (57%)
Query: 13 EEKEEEEEEEEEEEEEDEEEEEEDEE 38
E +++E EE+ E++ +E D +
Sbjct: 59 EAALQQDEGEEQRVEQELGQESSDSK 84
Score = 27.5 bits (61), Expect = 1.6
Identities = 7/26 (26%), Positives = 14/26 (53%)
Query: 21 EEEEEEEEDEEEEEEDEEEEEEEEEE 46
E +++E EE+ E E +E + +
Sbjct: 59 EAALQQDEGEEQRVEQELGQESSDSK 84
Score = 27.5 bits (61), Expect = 1.8
Identities = 7/25 (28%), Positives = 14/25 (56%)
Query: 11 EEEEKEEEEEEEEEEEEEDEEEEEE 35
E +++E EE+ E+E +E +
Sbjct: 59 EAALQQDEGEEQRVEQELGQESSDS 83
Score = 27.1 bits (60), Expect = 2.5
Identities = 7/26 (26%), Positives = 15/26 (57%)
Query: 6 EEEEKEEEEKEEEEEEEEEEEEEDEE 31
E +++E +E+ E+E +E D +
Sbjct: 59 EAALQQDEGEEQRVEQELGQESSDSK 84
Score = 27.1 bits (60), Expect = 2.5
Identities = 8/26 (30%), Positives = 15/26 (57%)
Query: 30 EEEEEEDEEEEEEEEEEEEEEEEEEE 55
E ++DE EE+ E+E +E + +
Sbjct: 59 EAALQQDEGEEQRVEQELGQESSDSK 84
Score = 26.8 bits (59), Expect = 3.4
Identities = 7/26 (26%), Positives = 15/26 (57%)
Query: 12 EEEKEEEEEEEEEEEEEDEEEEEEDE 37
E +++E EE+ E+E +E + +
Sbjct: 59 EAALQQDEGEEQRVEQELGQESSDSK 84
Score = 26.4 bits (58), Expect = 4.5
Identities = 7/26 (26%), Positives = 15/26 (57%)
Query: 28 EDEEEEEEDEEEEEEEEEEEEEEEEE 53
E +++E EE+ E+E +E + +
Sbjct: 59 EAALQQDEGEEQRVEQELGQESSDSK 84
Score = 26.0 bits (57), Expect = 5.7
Identities = 8/26 (30%), Positives = 15/26 (57%)
Query: 23 EEEEEEDEEEEEEDEEEEEEEEEEEE 48
E ++DE EE+ E+E +E + +
Sbjct: 59 EAALQQDEGEEQRVEQELGQESSDSK 84
Score = 26.0 bits (57), Expect = 6.2
Identities = 7/26 (26%), Positives = 14/26 (53%)
Query: 24 EEEEEDEEEEEEDEEEEEEEEEEEEE 49
E + +E EE+ E+E +E + +
Sbjct: 59 EAALQQDEGEEQRVEQELGQESSDSK 84
>gnl|CDD|189762 pfam00901, Orbi_VP5, Orbivirus outer capsid protein VP5.
cryoelectron microscopy indicates that VP5 is a trimer
implying that there are 360 copies of VP5 per virion.
Length = 507
Score = 27.7 bits (62), Expect = 1.5
Identities = 19/47 (40%), Positives = 30/47 (63%)
Query: 6 EEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEE 52
E E+KEEE +E+ ++ E+ ED EE + + E + EEEEE++ E
Sbjct: 97 EREQKEEEVREKHNKKIIEKFGEDLEEVYKFMKGEAKVEEEEEKQME 143
>gnl|CDD|225340 COG2719, SpoVR, Uncharacterized conserved protein [Function
unknown].
Length = 495
Score = 27.8 bits (62), Expect = 1.5
Identities = 11/48 (22%), Positives = 20/48 (41%)
Query: 9 EKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEEL 56
E+E +EE EE + + + + E ++ E EE+L
Sbjct: 185 EEERARQEEREEYLQSQVNDLWRTLPKKPGEAAVKDARRFPSEPEEDL 232
Score = 27.4 bits (61), Expect = 1.7
Identities = 12/53 (22%), Positives = 23/53 (43%)
Query: 3 KREEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEE 55
KR ++ EEE +EE EE + + ++ ++ E ++ E E
Sbjct: 177 KRPKKISSEEERARQEEREEYLQSQVNDLWRTLPKKPGEAAVKDARRFPSEPE 229
>gnl|CDD|222571 pfam14153, Spore_coat_CotO, Spore coat protein CotO. Bacillus
spores are protected by a protein shell consisting of
over 50 different polypeptides, known as the coat. This
family of proteins has an important morphogenetic role
in coat assembly, it is involved in the assembly of at
least 5 different coat proteins including CotB, CotG,
CotS, CotSA and CotW. It is likely to act at a late
stage of coat assembly.
Length = 185
Score = 27.5 bits (61), Expect = 1.5
Identities = 23/53 (43%), Positives = 39/53 (73%)
Query: 3 KREEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEE 55
+EEE++ E EE E+E+E E E E+ E++E++E +EEE+EEE E+ +++E
Sbjct: 52 SKEEEQKIEYEEAEKEKEAGEPEREDIAEQQEKEEIAQEEEKEEEAEDVKQQE 104
Score = 26.7 bits (59), Expect = 2.6
Identities = 25/53 (47%), Positives = 38/53 (71%)
Query: 3 KREEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEE 55
K +EEE+K E E+ E+E+E E E ED E++E EE +EEE+EEE E+ +++
Sbjct: 51 KSKEEEQKIEYEEAEKEKEAGEPEREDIAEQQEKEEIAQEEEKEEEAEDVKQQ 103
Score = 26.7 bits (59), Expect = 2.9
Identities = 22/51 (43%), Positives = 36/51 (70%)
Query: 5 EEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEE 55
E++ E EE EKE+E E E E+ +++E+EE +EEE+EEE E+ +++E
Sbjct: 56 EQKIEYEEAEKEKEAGEPEREDIAEQQEKEEIAQEEEKEEEAEDVKQQEVF 106
Score = 26.3 bits (58), Expect = 3.2
Identities = 23/56 (41%), Positives = 37/56 (66%)
Query: 2 GKREEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEELQ 57
+ +EE+++ E EE E+E+E E E E+ E+ E+EE +EEE+EEE E+ + Q
Sbjct: 48 EHVKSKEEEQKIEYEEAEKEKEAGEPEREDIAEQQEKEEIAQEEEKEEEAEDVKQQ 103
Score = 26.3 bits (58), Expect = 3.8
Identities = 23/59 (38%), Positives = 36/59 (61%)
Query: 1 MGKREEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEELQAG 59
+E + +EEE++ E EE E+E+E E E E+ E++E+EE +EEE+EEE
Sbjct: 43 KENSDEHVKSKEEEQKIEYEEAEKEKEAGEPEREDIAEQQEKEEIAQEEEKEEEAEDVK 101
Score = 25.9 bits (57), Expect = 4.4
Identities = 21/57 (36%), Positives = 37/57 (64%)
Query: 1 MGKREEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEELQ 57
+ + +E+E++ + EE E+E+E E + E+ E +E+EE +EEE+EEE E+ Q
Sbjct: 46 SDEHVKSKEEEQKIEYEEAEKEKEAGEPEREDIAEQQEKEEIAQEEEKEEEAEDVKQ 102
Score = 25.9 bits (57), Expect = 5.4
Identities = 22/55 (40%), Positives = 38/55 (69%)
Query: 3 KREEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEELQ 57
++EEE+E +E + +EEE++ E EE E+E+E E E E+ E++E+EE +E +
Sbjct: 38 EKEEEKENSDEHVKSKEEEQKIEYEEAEKEKEAGEPEREDIAEQQEKEEIAQEEE 92
Score = 25.6 bits (56), Expect = 5.8
Identities = 21/54 (38%), Positives = 36/54 (66%)
Query: 2 GKREEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEE 55
++E +E + ++EE++ E EE E+E E E E E+ E++E+EE +EEE+E
Sbjct: 41 EEKENSDEHVKSKEEEQKIEYEEAEKEKEAGEPEREDIAEQQEKEEIAQEEEKE 94
Score = 25.2 bits (55), Expect = 7.9
Identities = 19/53 (35%), Positives = 35/53 (66%)
Query: 3 KREEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEE 55
+ ++ E +E E+++E E E E+ E +E+EE +EEE+EEE E+ +++E
Sbjct: 55 EEQKIEYEEAEKEKEAGEPEREDIAEQQEKEEIAQEEEKEEEAEDVKQQEVFS 107
>gnl|CDD|221641 pfam12569, NARP1, NMDA receptor-regulated protein 1. This domain
family is found in eukaryotes, and is approximately 40
amino acids in length. The family is found in
association with pfam07719, pfam00515. There is a single
completely conserved residue L that may be functionally
important. NARP1 is the mammalian homologue of a yeast
N-terminal acetyltransferase that regulates entry into
the G(0) phase of the cell cycle.
Length = 516
Score = 27.6 bits (62), Expect = 1.5
Identities = 9/48 (18%), Positives = 27/48 (56%)
Query: 3 KREEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEE 50
K+ +++++ E+K E+EE E+ ++ E + + + E ++ + +
Sbjct: 412 KKLRKKQRKAEKKAEKEEAEKAAAKKKAEAAAKKAKGPDGETKKVDPD 459
Score = 27.6 bits (62), Expect = 1.8
Identities = 10/51 (19%), Positives = 25/51 (49%)
Query: 1 MGKREEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEE 51
G E K+ +K+ + E++ E+EE ++ ++ E ++ + + E
Sbjct: 403 NGNLSPAERKKLRKKQRKAEKKAEKEEAEKAAAKKKAEAAAKKAKGPDGET 453
Score = 26.4 bits (59), Expect = 4.1
Identities = 9/51 (17%), Positives = 27/51 (52%)
Query: 5 EEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEE 55
E +K +++ + E++ E+EE E +++ E ++ + + E ++ +
Sbjct: 408 PAERKKLRKKQRKAEKKAEKEEAEKAAAKKKAEAAAKKAKGPDGETKKVDP 458
>gnl|CDD|172358 PRK13831, PRK13831, conjugal transfer protein TrbI; Provisional.
Length = 432
Score = 27.8 bits (62), Expect = 1.5
Identities = 14/58 (24%), Positives = 25/58 (43%)
Query: 3 KREEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEELQAGG 60
++EE+ + + EE E +EE + E+EE+ E + + LQA
Sbjct: 99 QQEEKAVNPFTPQPGQREERRPTLESEEEWRARLKREQEEQYLRERQRQRMARLQANA 156
Score = 27.0 bits (60), Expect = 2.9
Identities = 13/46 (28%), Positives = 21/46 (45%)
Query: 12 EEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEELQ 57
E ++EE+ + EE E EEE + E+EE+ L+
Sbjct: 97 ETQQEEKAVNPFTPQPGQREERRPTLESEEEWRARLKREQEEQYLR 142
Score = 25.9 bits (57), Expect = 7.1
Identities = 15/64 (23%), Positives = 29/64 (45%), Gaps = 7/64 (10%)
Query: 1 MGKREEEE-------EKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEE 53
+G+ ++++ E ++EEK + + E+ E EEE + E+EE+
Sbjct: 82 IGEPQQQQTFQPTPVETQQEEKAVNPFTPQPGQREERRPTLESEEEWRARLKREQEEQYL 141
Query: 54 EELQ 57
E Q
Sbjct: 142 RERQ 145
>gnl|CDD|215656 pfam00012, HSP70, Hsp70 protein. Hsp70 chaperones help to fold
many proteins. Hsp70 assisted folding involves repeated
cycles of substrate binding and release. Hsp70 activity
is ATP dependent. Hsp70 proteins are made up of two
regions: the amino terminus is the ATPase domain and the
carboxyl terminus is the substrate binding region.
Length = 598
Score = 27.6 bits (62), Expect = 1.6
Identities = 23/71 (32%), Positives = 35/71 (49%), Gaps = 9/71 (12%)
Query: 3 KREEEEEKEEEE---------KEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEE 53
++E E K E E +EE ++ E +++ EE E +EE E E++EE E +
Sbjct: 523 RKERIEAKNEAEEYVYSLEKSLKEEGDKLPEADKKKVEEAIEWLKEELEGEDKEEIEAKT 582
Query: 54 EELQAGGHGIA 64
EELQ I
Sbjct: 583 EELQKVVQPIG 593
Score = 27.2 bits (61), Expect = 2.1
Identities = 9/48 (18%), Positives = 22/48 (45%)
Query: 8 EEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEE 55
K++ +E++ ++E E ++ EE E+++ +E E
Sbjct: 481 SAKDKGTGKEQKITITASSGLSDDEIERMVKDAEEYAAEDKKRKERIE 528
Score = 27.2 bits (61), Expect = 2.4
Identities = 13/51 (25%), Positives = 24/51 (47%)
Query: 1 MGKREEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEE 51
G +E++ ++E E ++ EE ED++ +E E + E EE
Sbjct: 485 KGTGKEQKITITASSGLSDDEIERMVKDAEEYAAEDKKRKERIEAKNEAEE 535
Score = 25.7 bits (57), Expect = 6.9
Identities = 16/56 (28%), Positives = 30/56 (53%), Gaps = 3/56 (5%)
Query: 4 REEEEEKEEEEKEEEEEEEEEEEEEDEEEEE---EDEEEEEEEEEEEEEEEEEEEL 56
++ EE E++K +E E + E EE E ++E ++ E ++++ EE E L
Sbjct: 511 KDAEEYAAEDKKRKERIEAKNEAEEYVYSLEKSLKEEGDKLPEADKKKVEEAIEWL 566
Score = 25.7 bits (57), Expect = 6.9
Identities = 12/54 (22%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
Query: 4 REEEEEKEEEEKEEEEEE-EEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEEL 56
+++ KE++ ++E E ++ EE E+++ +E E + E EE
Sbjct: 483 KDKGTGKEQKITITASSGLSDDEIERMVKDAEEYAAEDKKRKERIEAKNEAEEY 536
Score = 25.3 bits (56), Expect = 9.9
Identities = 9/48 (18%), Positives = 21/48 (43%)
Query: 6 EEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEE 53
++K ++++ +DE E + EE E+++ +E E
Sbjct: 481 SAKDKGTGKEQKITITASSGLSDDEIERMVKDAEEYAAEDKKRKERIE 528
>gnl|CDD|222160 pfam13476, AAA_23, AAA domain.
Length = 204
Score = 27.5 bits (61), Expect = 1.6
Identities = 24/54 (44%), Positives = 39/54 (72%)
Query: 4 REEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEELQ 57
R EE + + +EK+E EE E+E EE E+E++ E+ EE+E+++E EE +EEL+
Sbjct: 144 RLEELKFKRKEKKERLEELEKELEELEDEKDLLEKLLEEKEKKKELEELKEELE 197
Score = 26.4 bits (58), Expect = 3.9
Identities = 23/55 (41%), Positives = 38/55 (69%)
Query: 3 KREEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEELQ 57
+ +E+++ EE E+E EE E+E++ E+ EE E+++E EE +EE EE EEL+
Sbjct: 150 FKRKEKKERLEELEKELEELEDEKDLLEKLLEEKEKKKELEELKEELEELLEELE 204
Score = 26.0 bits (57), Expect = 5.0
Identities = 19/53 (35%), Positives = 37/53 (69%)
Query: 5 EEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEELQ 57
+E +E + K +E++E EE E++ EE E++++ E+ EE+E+++E EEL+
Sbjct: 141 GQERLEELKFKRKEKKERLEELEKELEELEDEKDLLEKLLEEKEKKKELEELK 193
Score = 25.2 bits (55), Expect = 8.0
Identities = 22/53 (41%), Positives = 38/53 (71%)
Query: 5 EEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEELQ 57
+ + KE++E+ EE E+E EE E++++ E+ EE+E+++E EE +EE EEL
Sbjct: 148 LKFKRKEKKERLEELEKELEELEDEKDLLEKLLEEKEKKKELEELKEELEELL 200
Score = 25.2 bits (55), Expect = 9.5
Identities = 21/55 (38%), Positives = 38/55 (69%)
Query: 3 KREEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEELQ 57
+ + + ++++E EE E+E EE E+E + E+ EE+E+++E EE +EE EE L+
Sbjct: 147 ELKFKRKEKKERLEELEKELEELEDEKDLLEKLLEEKEKKKELEELKEELEELLE 201
Score = 25.2 bits (55), Expect = 10.0
Identities = 21/53 (39%), Positives = 37/53 (69%)
Query: 2 GKREEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEE 54
+ EE + K +E+KE EE E+E EE ++E++ ++ EE+E+++E EE +EE
Sbjct: 143 ERLEELKFKRKEKKERLEELEKELEELEDEKDLLEKLLEEKEKKKELEELKEE 195
>gnl|CDD|223997 COG1071, AcoA, Pyruvate/2-oxoglutarate dehydrogenase complex,
dehydrogenase (E1) component, eukaryotic type, alpha
subunit [Energy production and conversion].
Length = 358
Score = 27.6 bits (62), Expect = 1.6
Identities = 17/54 (31%), Positives = 24/54 (44%)
Query: 5 EEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEELQA 58
EEE E E E + E +E E E + + E+ E EE+ EEL+
Sbjct: 305 EEELEAIEAEAKAEVDEAVEFAEASPYPDVSELFEDVYAEGPPHLEEQREELEE 358
>gnl|CDD|217509 pfam03353, Lin-8, Ras-mediated vulval-induction antagonist. LIN-8
is a nuclear protein, present at the sites of
transcriptional repressor complexes, which interacts
with LIN-35 Rb.Lin35 Rb is a product of the class B
synMuv gene lin-35 which silences genes required for
vulval specification through chromatin modification and
remodelling. The biological role of the interaction has
not yet been determined however predictions have been
made. The interaction shows that class A synMuv genes
control vulval induction through the transcriptional
regulation of gene expression. LIN-8 normally functions
as part of a protein complex however when the complex is
absent, other family members can partially replace LIN-8
activity.
Length = 316
Score = 27.4 bits (61), Expect = 1.7
Identities = 13/60 (21%), Positives = 24/60 (40%)
Query: 3 KREEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEELQAGGHG 62
+ E ++ EE +E +E E EE +D +E E+ +E ++ Q
Sbjct: 151 EDRTRESQDMEENDEVDEVEVEEVPDDYGANLAVDEPEQSTMSRPQEVKQSVPAQQAPPN 210
Score = 27.0 bits (60), Expect = 2.3
Identities = 16/51 (31%), Positives = 29/51 (56%)
Query: 4 REEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEE 54
R+E E++E ++E++ + ED E +D EE +E +E E EE ++
Sbjct: 127 RKEPWTGEDQEADDEDDIIYDGIFEDRTRESQDMEENDEVDEVEVEEVPDD 177
Score = 26.6 bits (59), Expect = 2.9
Identities = 17/69 (24%), Positives = 33/69 (47%), Gaps = 3/69 (4%)
Query: 2 GKREEEEEKEEEEKEEEEEEEEEE---EEEDEEEEEEDEEEEEEEEEEEEEEEEEEELQA 58
G+ E E KE E++E ++E++ + E+ E ++ EE +E +E E EE +
Sbjct: 120 GQFEAELRKEPWTGEDQEADDEDDIIYDGIFEDRTRESQDMEENDEVDEVEVEEVPDDYG 179
Query: 59 GGHGIAICQ 67
+ +
Sbjct: 180 ANLAVDEPE 188
Score = 25.4 bits (56), Expect = 8.2
Identities = 12/44 (27%), Positives = 21/44 (47%)
Query: 12 EEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEE 55
+ E+ E ++ EE DE +E E EE ++ +E E+
Sbjct: 147 DGIFEDRTRESQDMEENDEVDEVEVEEVPDDYGANLAVDEPEQS 190
Score = 25.4 bits (56), Expect = 8.4
Identities = 10/43 (23%), Positives = 19/43 (44%)
Query: 11 EEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEE 53
E E ++ EE +E +E E E+ ++ +E E+
Sbjct: 148 GIFEDRTRESQDMEENDEVDEVEVEEVPDDYGANLAVDEPEQS 190
Score = 25.4 bits (56), Expect = 8.8
Identities = 12/54 (22%), Positives = 25/54 (46%)
Query: 5 EEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEELQA 58
E++ E ++ EE +E +E E +E ++ +E E+ +E Q+
Sbjct: 148 GIFEDRTRESQDMEENDEVDEVEVEEVPDDYGANLAVDEPEQSTMSRPQEVKQS 201
>gnl|CDD|222762 pfam14456, alpha-hel2, Alpha-helical domain 2. An alpha-helical
domain found in gene neighborhoods encoding genes
containing bacterial homologs of components of the
ubiquitin modification pathway such as the E1, E2, Ub
and JAB peptidase proteins.
Length = 322
Score = 27.4 bits (61), Expect = 1.7
Identities = 13/33 (39%), Positives = 16/33 (48%)
Query: 19 EEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEE 51
E++EEE E E E E+DEE EE
Sbjct: 140 EDDEEEALEVLEGEGEDDEEAAAEEYFSRVRPA 172
Score = 25.9 bits (57), Expect = 6.2
Identities = 13/29 (44%), Positives = 16/29 (55%)
Query: 27 EEDEEEEEEDEEEEEEEEEEEEEEEEEEE 55
E+DEEE E E E E++EE EE
Sbjct: 140 EDDEEEALEVLEGEGEDDEEAAAEEYFSR 168
Score = 25.5 bits (56), Expect = 7.8
Identities = 15/53 (28%), Positives = 19/53 (35%)
Query: 20 EEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEELQAGGHGIAICQCKSAK 72
E++EEE E E E ED+EE EE H + K
Sbjct: 140 EDDEEEALEVLEGEGEDDEEAAAEEYFSRVRPALAPDDGHPHLFKWGPEWARK 192
>gnl|CDD|213783 TIGR03181, PDH_E1_alph_x, pyruvate dehydrogenase E1 component,
alpha subunit. Members of this protein family are the
alpha subunit of the E1 component of pyruvate
dehydrogenase (PDH). This model represents one branch of
a larger family that E1-alpha proteins from
2-oxoisovalerate dehydrogenase, acetoin dehydrogenase,
another PDH clade, etc [Energy metabolism, Pyruvate
dehydrogenase].
Length = 341
Score = 27.5 bits (62), Expect = 1.7
Identities = 19/53 (35%), Positives = 26/53 (49%), Gaps = 3/53 (5%)
Query: 4 REEEEEKEEEEKEEEEEEEEEEEEE---DEEEEEEDEEEEEEEEEEEEEEEEE 53
R +EEE+E +K+ + E + DEE+EE EEE E E E E
Sbjct: 261 RTKEEEEEWRKKDPILRLRKYLERKGLWDEEQEEALEEEAEAEVAEAVAEALA 313
Score = 25.2 bits (56), Expect = 9.6
Identities = 18/45 (40%), Positives = 23/45 (51%), Gaps = 9/45 (20%)
Query: 19 EEEEEEEEEED---------EEEEEEDEEEEEEEEEEEEEEEEEE 54
+EEEEE ++D E + DEE+EE EEE E E E
Sbjct: 263 KEEEEEWRKKDPILRLRKYLERKGLWDEEQEEALEEEAEAEVAEA 307
>gnl|CDD|227446 COG5116, RPN2, 26S proteasome regulatory complex component
[Posttranslational modification, protein turnover,
chaperones].
Length = 926
Score = 27.6 bits (61), Expect = 1.8
Identities = 10/47 (21%), Positives = 21/47 (44%)
Query: 3 KREEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEE 49
K +++ +EK ++E + E E E E ++ EE+ +
Sbjct: 792 KAAARAKQKPKEKGPNDKEIKIESPSVETEGERCTIKQREEKGIDAP 838
Score = 25.7 bits (56), Expect = 8.5
Identities = 10/53 (18%), Positives = 23/53 (43%)
Query: 3 KREEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEE 55
K +E+ ++E K E E E E ++ EE + ++++ + +
Sbjct: 800 KPKEKGPNDKEIKIESPSVETEGERCTIKQREEKGIDAPAILNVKKKKPYKVD 852
>gnl|CDD|226246 COG3723, RecT, Recombinational DNA repair protein (RecE pathway)
[DNA replication, recombination, and repair].
Length = 276
Score = 27.5 bits (61), Expect = 1.8
Identities = 17/55 (30%), Positives = 28/55 (50%)
Query: 1 MGKREEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEE 55
M E+E E E + EE+ E+ + E E + +E +EE E+ + EE+E
Sbjct: 217 MQTAVTEDEAERREPLDVTPEEDSEQLDSEPSGEPEAQETDEENEKPIDVSEEKE 271
Score = 26.0 bits (57), Expect = 5.1
Identities = 15/54 (27%), Positives = 28/54 (51%)
Query: 5 EEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEELQA 58
E+E + E + EE+ E+ + + E E +E +EE E+ + EE+E +
Sbjct: 222 TEDEAERREPLDVTPEEDSEQLDSEPSGEPEAQETDEENEKPIDVSEEKEPITE 275
Score = 25.2 bits (55), Expect = 9.9
Identities = 15/51 (29%), Positives = 27/51 (52%)
Query: 3 KREEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEE 53
+E E +E + EE+ E+ + E E E ++ +EE E+ + EE+E
Sbjct: 222 TEDEAERREPLDVTPEEDSEQLDSEPSGEPEAQETDEENEKPIDVSEEKEP 272
>gnl|CDD|222800 PHA00458, PHA00458, single-stranded DNA-binding protein.
Length = 233
Score = 27.1 bits (60), Expect = 1.8
Identities = 15/39 (38%), Positives = 27/39 (69%)
Query: 17 EEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEE 55
+E+EE+ E + + +DEEE +E++EEE EE+E+ +
Sbjct: 194 DEDEEDGYVASEAKARKPQDEEEWDEDDEEESEEDEDGD 232
Score = 25.5 bits (56), Expect = 7.8
Identities = 16/38 (42%), Positives = 25/38 (65%)
Query: 11 EEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEE 48
E+EE E + + +DEEE +ED+EEE EE+E+ +
Sbjct: 195 EDEEDGYVASEAKARKPQDEEEWDEDDEEESEEDEDGD 232
>gnl|CDD|233573 TIGR01781, Trep_dent_lipo, Treponema denticola clustered
lipoprotein. This model represents a family of six
predicted lipoproteins from a region of about 20
tandemly arranged genes in the Treponema denticola
genome. Two other neighboring genes share the
lipoprotein signal peptide region but do not show more
extensive homology. The function of this locus is
unknown.
Length = 412
Score = 27.2 bits (60), Expect = 1.9
Identities = 12/52 (23%), Positives = 25/52 (48%)
Query: 3 KREEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEE 54
K+E++E E + E+ + EE+E E + E + + E+ +E +
Sbjct: 22 KKEDKESGLREMRVEKFSKMEEKENEFLSKPEYNTHVKSPEQIKELSNKISG 73
>gnl|CDD|184416 PRK13955, mscL, large-conductance mechanosensitive channel;
Provisional.
Length = 130
Score = 26.7 bits (59), Expect = 1.9
Identities = 12/18 (66%), Positives = 14/18 (77%)
Query: 10 KEEEEKEEEEEEEEEEEE 27
K+EEEKEEE E +EEE
Sbjct: 96 KKEEEKEEEIPEPTKEEE 113
Score = 26.7 bits (59), Expect = 2.2
Identities = 10/19 (52%), Positives = 14/19 (73%)
Query: 15 KEEEEEEEEEEEEEDEEEE 33
++EEE+EEE E +EEE
Sbjct: 95 SKKEEEKEEEIPEPTKEEE 113
Score = 26.3 bits (58), Expect = 2.7
Identities = 11/19 (57%), Positives = 15/19 (78%)
Query: 38 EEEEEEEEEEEEEEEEEEL 56
++EEE+EEE E +EEEL
Sbjct: 96 KKEEEKEEEIPEPTKEEEL 114
Score = 25.9 bits (57), Expect = 3.6
Identities = 10/18 (55%), Positives = 14/18 (77%)
Query: 9 EKEEEEKEEEEEEEEEEE 26
+KEEE++EE E +EEE
Sbjct: 96 KKEEEKEEEIPEPTKEEE 113
Score = 25.9 bits (57), Expect = 4.1
Identities = 13/27 (48%), Positives = 16/27 (59%)
Query: 3 KREEEEEKEEEEKEEEEEEEEEEEEED 29
++EEEKEEE E +EEE E D
Sbjct: 94 TSKKEEEKEEEIPEPTKEEELLGEIRD 120
Score = 25.2 bits (55), Expect = 6.9
Identities = 11/20 (55%), Positives = 15/20 (75%)
Query: 37 EEEEEEEEEEEEEEEEEEEL 56
++EEE+EEE E +EEE L
Sbjct: 96 KKEEEKEEEIPEPTKEEELL 115
Score = 25.2 bits (55), Expect = 7.0
Identities = 10/20 (50%), Positives = 14/20 (70%)
Query: 15 KEEEEEEEEEEEEEDEEEEE 34
++EEE+EEE E +EEE
Sbjct: 94 TSKKEEEKEEEIPEPTKEEE 113
Score = 25.2 bits (55), Expect = 8.1
Identities = 11/22 (50%), Positives = 15/22 (68%)
Query: 10 KEEEEKEEEEEEEEEEEEEDEE 31
K +KEEE+EEE E ++EE
Sbjct: 92 KLTSKKEEEKEEEIPEPTKEEE 113
Score = 25.2 bits (55), Expect = 8.5
Identities = 9/18 (50%), Positives = 14/18 (77%)
Query: 23 EEEEEEDEEEEEEDEEEE 40
++EEE++EE E +EEE
Sbjct: 96 KKEEEKEEEIPEPTKEEE 113
>gnl|CDD|100109 cd05831, Ribosomal_P1, Ribosomal protein P1. This subfamily
represents the eukaryotic large ribosomal protein P1.
Eukaryotic P1 and P2 are functionally equivalent to the
bacterial protein L7/L12, but are not homologous to
L7/L12. P1 is located in the L12 stalk, with proteins
P2, P0, L11, and 28S rRNA. P1 and P2 are the only
proteins in the ribosome to occur as multimers, always
appearing as sets of heterodimers. Recent data indicate
that eukaryotes have four copies (two heterodimers),
while most archaeal species contain six copies of L12p
(three homodimers) and bacteria may have four or six
copies (two or three homodimers), depending on the
species. Experiments using S. cerevisiae P1 and P2
indicate that P1 proteins are positioned more
internally with limited reactivity in the C-terminal
domains, while P2 proteins seem to be more externally
located and are more likely to interact with other
cellular components. In lower eukaryotes, P1 and P2 are
further subdivided into P1A, P1B, P2A, and P2B, which
form P1A/P2B and P1B/P2A heterodimers. Some plant
species have a third P-protein, called P3, which is not
homologous to P1 and P2. In humans, P1 and P2 are
strongly autoimmunogenic. They play a significant role
in the etiology and pathogenesis of systemic lupus
erythema (SLE). In addition, the ribosome-inactivating
protein trichosanthin (TCS) interacts with human P0,
P1, and P2, with its primary binding site located in
the C-terminal region of P2. TCS inactivates the
ribosome by depurinating a specific adenine in the
sarcin-ricin loop of 28S rRNA.
Length = 103
Score = 26.5 bits (59), Expect = 1.9
Identities = 11/20 (55%), Positives = 16/20 (80%)
Query: 6 EEEEKEEEEKEEEEEEEEEE 25
E K+EE+KEEEEEE +++
Sbjct: 78 AAEAKKEEKKEEEEEESDDD 97
Score = 26.1 bits (58), Expect = 3.1
Identities = 11/23 (47%), Positives = 16/23 (69%)
Query: 8 EEKEEEEKEEEEEEEEEEEEEDE 30
E K+EE++EEEEEE +D+
Sbjct: 75 AAAAAEAKKEEKKEEEEEESDDD 97
Score = 25.0 bits (55), Expect = 6.8
Identities = 10/20 (50%), Positives = 16/20 (80%)
Query: 7 EEEKEEEEKEEEEEEEEEEE 26
E ++EEK+EEEEEE +++
Sbjct: 78 AAEAKKEEKKEEEEEESDDD 97
>gnl|CDD|145910 pfam03012, PP_M1, Phosphoprotein. This family includes the M1
phosphoprotein non-structural RNA polymerase alpha
subunit, which is thought to be a component of the
active polymerase, and may be involved in template
binding.
Length = 298
Score = 27.4 bits (61), Expect = 1.9
Identities = 12/36 (33%), Positives = 19/36 (52%)
Query: 1 MGKREEEEEKEEEEKEEEEEEEEEEEEEDEEEEEED 36
M + + + K + EEE+E+E EE+ E ED
Sbjct: 53 MSRLQISDAKPSQFTEEEDEDEGSSEEDFYMTEGED 88
>gnl|CDD|223610 COG0536, Obg, Predicted GTPase [General function prediction only].
Length = 369
Score = 27.1 bits (61), Expect = 1.9
Identities = 12/34 (35%), Positives = 17/34 (50%)
Query: 4 REEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDE 37
+ E E E EE E E ++E ED E +D+
Sbjct: 336 KAEAEAAEAEELPVEVEVLYDDEHEDFEIVRDDD 369
Score = 26.7 bits (60), Expect = 3.1
Identities = 11/34 (32%), Positives = 17/34 (50%)
Query: 3 KREEEEEKEEEEKEEEEEEEEEEEEEDEEEEEED 36
K E E + EE E E ++E E+ E ++D
Sbjct: 336 KAEAEAAEAEELPVEVEVLYDDEHEDFEIVRDDD 369
Score = 26.0 bits (58), Expect = 5.4
Identities = 13/37 (35%), Positives = 19/37 (51%)
Query: 13 EEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEE 49
EE + E E E EE E E D+E E+ E +++
Sbjct: 333 EETKAEAEAAEAEELPVEVEVLYDDEHEDFEIVRDDD 369
Score = 26.0 bits (58), Expect = 6.0
Identities = 11/41 (26%), Positives = 19/41 (46%)
Query: 1 MGKREEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEE 41
EE + + E + EE E E +DE E+ E +++
Sbjct: 329 AELLEETKAEAEAAEAEELPVEVEVLYDDEHEDFEIVRDDD 369
Score = 26.0 bits (58), Expect = 6.0
Identities = 13/37 (35%), Positives = 19/37 (51%)
Query: 7 EEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEE 43
EE K E E E EE E E ++E E+ E +++
Sbjct: 333 EETKAEAEAAEAEELPVEVEVLYDDEHEDFEIVRDDD 369
Score = 25.6 bits (57), Expect = 6.3
Identities = 12/37 (32%), Positives = 19/37 (51%)
Query: 8 EEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEE 44
EE + E + E EE E E ++E ED E +++
Sbjct: 333 EETKAEAEAAEAEELPVEVEVLYDDEHEDFEIVRDDD 369
Score = 25.6 bits (57), Expect = 7.4
Identities = 12/37 (32%), Positives = 19/37 (51%)
Query: 6 EEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEE 42
EE + E E E EE E E D+E E+ + +++
Sbjct: 333 EETKAEAEAAEAEELPVEVEVLYDDEHEDFEIVRDDD 369
>gnl|CDD|224143 COG1222, RPT1, ATP-dependent 26S proteasome regulatory subunit
[Posttranslational modification, protein turnover,
chaperones].
Length = 406
Score = 27.2 bits (61), Expect = 2.0
Identities = 19/93 (20%), Positives = 35/93 (37%), Gaps = 4/93 (4%)
Query: 6 EEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEELQAGGHGIAI 65
+E + E+ + + E+E+ EE+ E E + E + EE E L+ +
Sbjct: 19 QEYLNKLEDTKLKLLEKEKRLLLLEEQRLEA-EGLRLKREVDRLREEIERLKEPPLIVGT 77
Query: 66 CQ---CKSAKIVTTKTIPMQVDGEACRVNPSII 95
IV + T P V V+ ++
Sbjct: 78 VLEVLDDGRAIVKSSTGPKFVVNILSFVDRDLL 110
>gnl|CDD|222440 pfam13897, GOLD_2, Golgi-dynamics membrane-trafficking.
Sec14-like Golgi-trafficking domain The GOLD domain is
always found combined with lipid- or
membrane-association domains.
Length = 136
Score = 27.0 bits (60), Expect = 2.0
Identities = 13/22 (59%), Positives = 15/22 (68%)
Query: 34 EEDEEEEEEEEEEEEEEEEEEE 55
E +EEEEEE EEEE E + E
Sbjct: 53 ESSDEEEEEEAEEEEAETGDVE 74
Score = 26.6 bits (59), Expect = 2.3
Identities = 12/22 (54%), Positives = 15/22 (68%)
Query: 27 EEDEEEEEEDEEEEEEEEEEEE 48
E +EEEEE+ EEEE E + E
Sbjct: 53 ESSDEEEEEEAEEEEAETGDVE 74
>gnl|CDD|233914 TIGR02538, type_IV_pilB, type IV-A pilus assembly ATPase PilB.
This model describes a protein of type IV pilus
biogenesis designated PilB in Pseudomonas aeruginosa but
PilF in Neisseria gonorrhoeae; the more common usage,
reflected here, is PilB. This protein is an ATPase
involved in protein export for pilin assembly and is
closely related to GspE (TIGR02533) of type II
secretion, also called the main terminal branch of the
general secretion pathway. Note that type IV pilus
systems are often divided into type IV-A and IV-B, with
the latter group including bundle-forming pilus,
mannose-sensitive hemagglutinin, etc. Members of this
family are found in type IV-A systems [Cell envelope,
Surface structures, Protein fate, Protein and peptide
secretion and trafficking].
Length = 564
Score = 27.3 bits (61), Expect = 2.0
Identities = 7/41 (17%), Positives = 22/41 (53%)
Query: 10 KEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEE 50
+ +E +E+ + EE + + +DE ++ E++ +++
Sbjct: 138 GSDSLAKELGDEDIGDLEELDVDAIDDEGPDDIEQDAVDDD 178
Score = 25.7 bits (57), Expect = 6.7
Identities = 7/34 (20%), Positives = 20/34 (58%)
Query: 8 EEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEE 41
E +E+ + EE + + ++E ++ E+D +++
Sbjct: 145 ELGDEDIGDLEELDVDAIDDEGPDDIEQDAVDDD 178
Score = 25.4 bits (56), Expect = 9.2
Identities = 6/42 (14%), Positives = 22/42 (52%)
Query: 2 GKREEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEE 43
G + ++ +E + EE + + +DE ++ +++ +++
Sbjct: 137 GGSDSLAKELGDEDIGDLEELDVDAIDDEGPDDIEQDAVDDD 178
>gnl|CDD|227441 COG5110, RPN1, 26S proteasome regulatory complex component
[Posttranslational modification, protein turnover,
chaperones].
Length = 881
Score = 27.2 bits (60), Expect = 2.0
Identities = 12/47 (25%), Positives = 30/47 (63%)
Query: 11 EEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEELQ 57
E ++K++ +E+ + E + ++D+++EEEE+ EE+ + +L+
Sbjct: 4 ESDKKQQTIDEQSQISPEKQTPNKKDKKKEEEEQLSEEDAMLKGDLE 50
Score = 26.4 bits (58), Expect = 4.9
Identities = 10/48 (20%), Positives = 32/48 (66%)
Query: 6 EEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEE 53
+E +K+++ +E+ + E++ ++++++++EEE+ EE+ + + E
Sbjct: 3 DESDKKQQTIDEQSQISPEKQTPNKKDKKKEEEEQLSEEDAMLKGDLE 50
>gnl|CDD|179525 PRK03003, PRK03003, GTP-binding protein Der; Reviewed.
Length = 472
Score = 27.2 bits (61), Expect = 2.1
Identities = 10/37 (27%), Positives = 18/37 (48%)
Query: 20 EEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEEL 56
+++E E D +E + E ++E+ E E E L
Sbjct: 2 DDDEAEMRADGTWADESDWELDDEDLAELEAAEGGPL 38
Score = 26.5 bits (59), Expect = 3.6
Identities = 10/34 (29%), Positives = 16/34 (47%)
Query: 16 EEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEE 49
++E E + DE + E D+E+ E E E
Sbjct: 3 DDEAEMRADGTWADESDWELDDEDLAELEAAEGG 36
Score = 25.7 bits (57), Expect = 7.1
Identities = 9/35 (25%), Positives = 17/35 (48%)
Query: 12 EEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEE 46
++++ E + +E D E ++ED E E E
Sbjct: 2 DDDEAEMRADGTWADESDWELDDEDLAELEAAEGG 36
Score = 25.7 bits (57), Expect = 7.4
Identities = 9/35 (25%), Positives = 17/35 (48%)
Query: 19 EEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEE 53
+++E E + +E D E ++E+ E E E
Sbjct: 2 DDDEAEMRADGTWADESDWELDDEDLAELEAAEGG 36
>gnl|CDD|215094 PLN00188, PLN00188, enhanced disease resistance protein (EDR2);
Provisional.
Length = 719
Score = 27.5 bits (61), Expect = 2.1
Identities = 10/38 (26%), Positives = 24/38 (63%)
Query: 17 EEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEE 54
+E+ +++EE + E E+E + + E ++ EEE +++
Sbjct: 442 DEDSDDDEEFQIPESEQEPETTKNETKDTAMEEEPQDK 479
Score = 27.1 bits (60), Expect = 2.4
Identities = 9/42 (21%), Positives = 23/42 (54%)
Query: 1 MGKREEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEE 42
+E+ + +EE + E E+E E + + ++ +EE +++
Sbjct: 438 SVMMDEDSDDDEEFQIPESEQEPETTKNETKDTAMEEEPQDK 479
Score = 26.7 bits (59), Expect = 3.4
Identities = 11/38 (28%), Positives = 24/38 (63%)
Query: 6 EEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEE 43
+E+ ++EE + E E+E E ++E ++ EEE +++
Sbjct: 442 DEDSDDDEEFQIPESEQEPETTKNETKDTAMEEEPQDK 479
Score = 26.3 bits (58), Expect = 4.8
Identities = 11/39 (28%), Positives = 25/39 (64%)
Query: 18 EEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEEL 56
+E+ +++EE + E E+E E + E ++ EEE ++++
Sbjct: 442 DEDSDDDEEFQIPESEQEPETTKNETKDTAMEEEPQDKI 480
Score = 26.3 bits (58), Expect = 5.0
Identities = 11/41 (26%), Positives = 26/41 (63%)
Query: 16 EEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEEL 56
+E+ +++EE + + E+E E + E ++ EEE +++ +L
Sbjct: 442 DEDSDDDEEFQIPESEQEPETTKNETKDTAMEEEPQDKIDL 482
Score = 25.9 bits (57), Expect = 5.8
Identities = 9/30 (30%), Positives = 16/30 (53%)
Query: 30 EEEEEEDEEEEEEEEEEEEEEEEEEELQAG 59
+E+ ++DEE + E E+E E + E
Sbjct: 442 DEDSDDDEEFQIPESEQEPETTKNETKDTA 471
Score = 25.9 bits (57), Expect = 6.6
Identities = 9/38 (23%), Positives = 24/38 (63%)
Query: 12 EEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEE 49
+E+ +++EE + E E++ E + + ++ EEE +++
Sbjct: 442 DEDSDDDEEFQIPESEQEPETTKNETKDTAMEEEPQDK 479
Score = 25.5 bits (56), Expect = 9.3
Identities = 10/46 (21%), Positives = 22/46 (47%)
Query: 6 EEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEE 51
++ +K +E ++ +E+ D++EE + E E+E E
Sbjct: 416 KKNQKPQESSPSLDQTNAASRNSVMMDEDSDDDEEFQIPESEQEPE 461
Score = 25.5 bits (56), Expect = 9.8
Identities = 10/37 (27%), Positives = 21/37 (56%)
Query: 11 EEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEE 47
E+ + +EE + E E+E + + E + EEE +++
Sbjct: 443 EDSDDDEEFQIPESEQEPETTKNETKDTAMEEEPQDK 479
>gnl|CDD|234045 TIGR02876, spore_yqfD, sporulation protein YqfD. YqfD is part of
the sigma-E regulon in the sporulation program of
endospore-forming Gram-positive bacteria. Mutation
results in a sporulation defect in Bacillus subtilis.
Members are found in all currently known
endospore-forming bacteria, including the genera
Bacillus, Symbiobacterium, Carboxydothermus,
Clostridium, and Thermoanaerobacter [Cellular processes,
Sporulation and germination].
Length = 382
Score = 27.3 bits (61), Expect = 2.2
Identities = 20/70 (28%), Positives = 36/70 (51%), Gaps = 11/70 (15%)
Query: 21 EEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEELQAGGHGIAICQCKSAKIVTTKTIP 80
+E E E+ E+ +EE E+ +E+ E+E ++EL +AKIV+ K +
Sbjct: 312 VKETYYEVKEKVEKVTKEEAIEKAKEKAEKELKKELD-----------PNAKIVSDKILS 360
Query: 81 MQVDGEACRV 90
+V+G +V
Sbjct: 361 ERVEGGKVKV 370
>gnl|CDD|219924 pfam08597, eIF3_subunit, Translation initiation factor eIF3
subunit. This is a family of proteins which are
subunits of the eukaryotic translation initiation factor
3 (eIF3). In yeast it is called Hcr1. The Saccharomyces
cerevisiae protein eIF3j (HCR1) has been shown to be
required for processing of 20S pre-rRNA and binds to 18S
rRNA and eIF3 subunits Rpg1p and Prt1p.
Length = 242
Score = 26.9 bits (60), Expect = 2.3
Identities = 15/54 (27%), Positives = 32/54 (59%)
Query: 3 KREEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEEL 56
K + ++ + + +E+E+ + E+EE+ E EE+ E+E E+ + +EE +L
Sbjct: 55 KAKAKKALKAKIEEKEKAKREKEEKGLRELEEDTPEDELAEKLRLRKLQEESDL 108
Score = 26.5 bits (59), Expect = 3.3
Identities = 15/54 (27%), Positives = 35/54 (64%)
Query: 5 EEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEELQA 58
E+++ K+ ++EE+EE+EEE+ + + + + + + EE+E+ + E+EE+
Sbjct: 29 EDDDVKDSWDEEEDEEKEEEKAKVAAKAKAKKALKAKIEEKEKAKREKEEKGLR 82
>gnl|CDD|217940 pfam04177, TAP42, TAP42-like family. The TOR signalling pathway
activates a cell-growth program in response to
nutrients. TIP41 (pfam04176) interacts with TAP42 and
negatively regulates the TOR signaling pathway.
Length = 335
Score = 26.9 bits (60), Expect = 2.4
Identities = 10/39 (25%), Positives = 23/39 (58%)
Query: 7 EEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEE 45
E+E + + E EE+E++E+++E+++EE +
Sbjct: 285 EQEMKRGGVPQGGGEAAASAEEEEDDEDDEEDDDEETLK 323
Score = 26.5 bits (59), Expect = 3.7
Identities = 14/43 (32%), Positives = 25/43 (58%)
Query: 8 EEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEE 50
+E E+E + + E EEEED+E++EE+++EE +
Sbjct: 281 DEYLEQEMKRGGVPQGGGEAAASAEEEEDDEDDEEDDDEETLK 323
Score = 26.1 bits (58), Expect = 4.7
Identities = 15/43 (34%), Positives = 25/43 (58%)
Query: 7 EEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEE 49
+E E+E K + E EEEE+DE++EE+++EE +
Sbjct: 281 DEYLEQEMKRGGVPQGGGEAAASAEEEEDDEDDEEDDDEETLK 323
Score = 25.7 bits (57), Expect = 5.8
Identities = 14/40 (35%), Positives = 24/40 (60%)
Query: 19 EEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEELQA 58
E+E + E EEEE++E++EE+++EE L+A
Sbjct: 285 EQEMKRGGVPQGGGEAAASAEEEEDDEDDEEDDDEETLKA 324
>gnl|CDD|216881 pfam02115, Rho_GDI, RHO protein GDP dissociation inhibitor.
Length = 200
Score = 26.9 bits (60), Expect = 2.4
Identities = 15/47 (31%), Positives = 27/47 (57%)
Query: 11 EEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEELQ 57
E+E E+ EE E+EEDE+ ++ +E +E ++E+E L+
Sbjct: 3 EQEPTAEQAEEIAAEDEEDEDSVNYKPPPQKSLKEIQELDKEDESLR 49
>gnl|CDD|221581 pfam12446, DUF3682, Protein of unknown function (DUF3682). This
domain family is found in eukaryotes, and is typically
between 125 and 136 amino acids in length.
Length = 133
Score = 26.7 bits (59), Expect = 2.4
Identities = 15/40 (37%), Positives = 26/40 (65%)
Query: 16 EEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEE 55
+EEEEEEEE+E++++ DE + ++ ++ E E EE
Sbjct: 92 GHTRQEEEEEEEENEKQQQSDEAQVQQHQQHEHPAENGEE 131
Score = 26.3 bits (58), Expect = 3.1
Identities = 14/40 (35%), Positives = 25/40 (62%)
Query: 9 EKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEE 48
+E+EEEEEE E++++ DE + ++ ++ E E EE
Sbjct: 92 GHTRQEEEEEEEENEKQQQSDEAQVQQHQQHEHPAENGEE 131
Score = 25.5 bits (56), Expect = 6.2
Identities = 14/40 (35%), Positives = 25/40 (62%)
Query: 12 EEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEE 51
++EEEEEEEE E++ + +E + ++ ++ E E EE
Sbjct: 92 GHTRQEEEEEEEENEKQQQSDEAQVQQHQQHEHPAENGEE 131
Score = 25.2 bits (55), Expect = 8.2
Identities = 14/37 (37%), Positives = 26/37 (70%)
Query: 3 KREEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEE 39
++EEEEE+EE EK+++ +E + ++ + E E+ EE
Sbjct: 95 RQEEEEEEEENEKQQQSDEAQVQQHQQHEHPAENGEE 131
Score = 24.8 bits (54), Expect = 9.8
Identities = 14/40 (35%), Positives = 23/40 (57%)
Query: 13 EEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEE 52
+EEEEEEEE E+ ++ +E ++ ++ E E EE
Sbjct: 92 GHTRQEEEEEEEENEKQQQSDEAQVQQHQQHEHPAENGEE 131
>gnl|CDD|236498 PRK09401, PRK09401, reverse gyrase; Reviewed.
Length = 1176
Score = 27.2 bits (61), Expect = 2.4
Identities = 19/55 (34%), Positives = 26/55 (47%), Gaps = 4/55 (7%)
Query: 3 KREEEEEKEEEE----KEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEE 53
+R +E +K + K E E E E E+EE E E E+ EE+EEE
Sbjct: 824 ERYKEYKKSKGYVLVIKLENGGGLELEGEFSEKEEAEKFYNNLIEVEKVEEKEEE 878
Score = 26.4 bits (59), Expect = 4.2
Identities = 18/56 (32%), Positives = 26/56 (46%), Gaps = 6/56 (10%)
Query: 7 EEEKEEEEKEEE------EEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEEL 56
E KE ++ + E E E + E+EE E+ E E+ EE+EEEL
Sbjct: 824 ERYKEYKKSKGYVLVIKLENGGGLELEGEFSEKEEAEKFYNNLIEVEKVEEKEEEL 879
Score = 25.3 bits (56), Expect = 9.6
Identities = 12/35 (34%), Positives = 18/35 (51%)
Query: 2 GKREEEEEKEEEEKEEEEEEEEEEEEEDEEEEEED 36
G E E + E++E E+ E E EE+EE+
Sbjct: 844 GGGLELEGEFSEKEEAEKFYNNLIEVEKVEEKEEE 878
>gnl|CDD|220112 pfam09110, HAND, HAND. The HAND domain adopts a secondary
structure consisting of four alpha helices, three of
which (H2, H3, H4) form an L-like configuration. Helix
H2 runs antiparallel to helices H3 and H4, packing
closely against helix H4, whilst helix H1 reposes in the
concave surface formed by these three helices and runs
perpendicular to them. The domain confers DNA and
nucleosome binding properties to the protein.
Length = 109
Score = 26.5 bits (59), Expect = 2.4
Identities = 18/45 (40%), Positives = 27/45 (60%)
Query: 11 EEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEE 55
++ +EE+EEE E + E+E+ D E EEEEEE++ EE
Sbjct: 64 DDVGDGDEEDEEEREAKRKLEQEKIDNAEPLTEEEEEEKQRLLEE 108
Score = 25.7 bits (57), Expect = 4.1
Identities = 15/41 (36%), Positives = 28/41 (68%)
Query: 6 EEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEE 46
+ +E++EEE+E + + E+E+ + E EE+EEE++ EE
Sbjct: 68 DGDEEDEEEREAKRKLEQEKIDNAEPLTEEEEEEKQRLLEE 108
Score = 25.3 bits (56), Expect = 5.4
Identities = 15/45 (33%), Positives = 29/45 (64%)
Query: 7 EEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEE 51
++ + +E++EEE E + + E+++ + E EEEEEE++ EE
Sbjct: 64 DDVGDGDEEDEEEREAKRKLEQEKIDNAEPLTEEEEEEKQRLLEE 108
Score = 24.5 bits (54), Expect = 9.3
Identities = 15/42 (35%), Positives = 26/42 (61%)
Query: 15 KEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEEL 56
+ + +EE+EEE + + + E E+ + E EEEEEE++ L
Sbjct: 64 DDVGDGDEEDEEEREAKRKLEQEKIDNAEPLTEEEEEEKQRL 105
>gnl|CDD|240228 PTZ00010, PTZ00010, tubulin beta chain; Provisional.
Length = 445
Score = 27.0 bits (60), Expect = 2.4
Identities = 11/25 (44%), Positives = 15/25 (60%)
Query: 20 EEEEEEEEEDEEEEEEDEEEEEEEE 44
E ++ ++ EEE E DEEEE E
Sbjct: 421 EYQQYQDATVEEEGEFDEEEEAYEI 445
Score = 26.7 bits (59), Expect = 3.0
Identities = 15/42 (35%), Positives = 21/42 (50%)
Query: 13 EEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEE 54
+E E E E + E ++ +D EEE E +EEEE E
Sbjct: 404 DEMEFTEAESNMNDLVSEYQQYQDATVEEEGEFDEEEEAYEI 445
Score = 26.3 bits (58), Expect = 4.0
Identities = 14/41 (34%), Positives = 19/41 (46%)
Query: 11 EEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEE 51
E E E E + E + ++ EEE E +EEEE E
Sbjct: 405 EMEFTEAESNMNDLVSEYQQYQDATVEEEGEFDEEEEAYEI 445
Score = 25.9 bits (57), Expect = 5.5
Identities = 16/46 (34%), Positives = 23/46 (50%)
Query: 2 GKREEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEE 47
G+ +E E E E + E ++ +D EEE E +EEEE E
Sbjct: 400 GEGMDEMEFTEAESNMNDLVSEYQQYQDATVEEEGEFDEEEEAYEI 445
Score = 25.5 bits (56), Expect = 8.5
Identities = 14/45 (31%), Positives = 22/45 (48%)
Query: 14 EKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEELQA 58
E +E E E E ++ E + ++ EEE E +EEEE +
Sbjct: 401 EGMDEMEFTEAESNMNDLVSEYQQYQDATVEEEGEFDEEEEAYEI 445
>gnl|CDD|129310 TIGR00206, fliF, flagellar basal-body M-ring protein/flagellar
hook-basal body protein (fliF). Component of the M
(cytoplasmic associated) ring, one of four rings
(L,P,S,M) which make up the flagellar hook-basal body
which is a major portion of the flagellar organelle.
Although the basic structure of the flagella appears to
be similar for all bacteria, additional rings and
structures surrounding the basal body have been observed
for some bacteria (eg Vibrio cholerae and Treponema
pallidum) [Cellular processes, Chemotaxis and motility].
Length = 555
Score = 27.2 bits (60), Expect = 2.5
Identities = 15/48 (31%), Positives = 24/48 (50%)
Query: 4 REEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEE 51
R E + E E+E ++ EE+EDE E E + ++ E +EE
Sbjct: 479 RPLERRRREREEELAKQAHLREEQEDEVEGELIKLDDLVGGINEGDEE 526
Score = 26.8 bits (59), Expect = 2.8
Identities = 16/55 (29%), Positives = 27/55 (49%)
Query: 1 MGKREEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEE 55
+REEE K+ +EE+E+E E E + ++ E +EE E +E+
Sbjct: 485 RREREEELAKQAHLREEQEDEVEGELIKLDDLVGGINEGDEEVSNAELRAMAKEK 539
>gnl|CDD|216648 pfam01690, PLRV_ORF5, Potato leaf roll virus readthrough protein.
This family consists mainly of the potato leaf roll
virus readthrough protein. This is generated via a
readthrough of open reading frame 3 a coat protein
allowing transcription of open reading frame 5 to give
an extended coat protein with a large c-terminal
addition or read through domain. The readthrough protein
is thought to play a role in the circulative aphid
transmission of potato leaf roll virus. Also in the
family is open reading frame 6 from beet western yellows
virus and potato leaf roll virus both luteovirus and an
unknown protein from cucurbit aphid-borne yellows virus
a closterovirus.
Length = 460
Score = 27.0 bits (60), Expect = 2.5
Identities = 10/54 (18%), Positives = 24/54 (44%)
Query: 3 KREEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEEL 56
E+ E++ + + E + E +ED++EE + E + ++ +L
Sbjct: 267 PDEQSSERQTFKTPPQPESSSDAENGLVSLVDEDDKEEVSRDSESDAPPDDTDL 320
>gnl|CDD|237205 PRK12792, flhA, flagellar biosynthesis protein FlhA; Reviewed.
Length = 694
Score = 27.0 bits (60), Expect = 2.5
Identities = 9/31 (29%), Positives = 14/31 (45%)
Query: 3 KREEEEEKEEEEKEEEEEEEEEEEEEDEEEE 33
+R E K + EEE + E +D +E
Sbjct: 325 RRRAARAAAEAAKVKREEESAQAEAKDSVKE 355
Score = 25.8 bits (57), Expect = 6.4
Identities = 10/41 (24%), Positives = 16/41 (39%)
Query: 21 EEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEELQAGGH 61
E + EEE + E ++ +E+ E EL G
Sbjct: 329 ARAAAEAAKVKREEESAQAEAKDSVKEQLRTAEIELCLGKQ 369
>gnl|CDD|218115 pfam04502, DUF572, Family of unknown function (DUF572). Family of
eukaryotic proteins with undetermined function.
Length = 321
Score = 27.0 bits (60), Expect = 2.6
Identities = 19/48 (39%), Positives = 28/48 (58%)
Query: 8 EEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEE 55
E EK+EEEEEEEE+E + E EE+ ++E+ E++EE
Sbjct: 174 EALFRREKKEEEEEEEEDEALIKSLSFGPETEEDRRRADDEDSEDDEE 221
Score = 27.0 bits (60), Expect = 2.7
Identities = 21/63 (33%), Positives = 30/63 (47%), Gaps = 5/63 (7%)
Query: 2 GKREEEEEKEEEEKEEEEEEEEEEEEEDE-----EEEEEDEEEEEEEEEEEEEEEEEEEL 56
R E +K +EE+EE E+E EEE + E D + E E E EE +E +
Sbjct: 104 ATRNYEADKLDEEQEERVEKEREEELAGDAMKKLENRTADSKREMEVLERLEELKELQSR 163
Query: 57 QAG 59
+A
Sbjct: 164 RAD 166
Score = 26.6 bits (59), Expect = 3.5
Identities = 16/60 (26%), Positives = 32/60 (53%)
Query: 3 KREEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEELQAGGHG 62
E+++EEEE+EE+E + E EE+ ++E+ E++EE+ + ++G
Sbjct: 176 LFRREKKEEEEEEEEDEALIKSLSFGPETEEDRRRADDEDSEDDEEDNDNTPSPKSGSSS 235
>gnl|CDD|234655 PRK00133, metG, methionyl-tRNA synthetase; Reviewed.
Length = 673
Score = 27.0 bits (61), Expect = 2.6
Identities = 7/40 (17%), Positives = 13/40 (32%)
Query: 9 EKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEE 48
+ E+++ E E +E + EE E
Sbjct: 528 TRIEDKQIEALIEASKEAAAAKAAAAAAAAPLAEEPIAET 567
Score = 26.7 bits (60), Expect = 3.8
Identities = 8/37 (21%), Positives = 12/37 (32%)
Query: 13 EEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEE 49
E+K+ E E +E + EE E
Sbjct: 531 EDKQIEALIEASKEAAAAKAAAAAAAAPLAEEPIAET 567
Score = 26.3 bits (59), Expect = 4.0
Identities = 7/37 (18%), Positives = 11/37 (29%)
Query: 18 EEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEE 54
E+++ E E +E EE E
Sbjct: 531 EDKQIEALIEASKEAAAAKAAAAAAAAPLAEEPIAET 567
Score = 25.9 bits (58), Expect = 6.0
Identities = 7/37 (18%), Positives = 11/37 (29%)
Query: 14 EKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEE 50
E ++ E E +E + EE E
Sbjct: 531 EDKQIEALIEASKEAAAAKAAAAAAAAPLAEEPIAET 567
Score = 25.5 bits (57), Expect = 9.0
Identities = 6/37 (16%), Positives = 12/37 (32%)
Query: 16 EEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEE 52
E+++ E E ++ + EE E
Sbjct: 531 EDKQIEALIEASKEAAAAKAAAAAAAAPLAEEPIAET 567
Score = 25.5 bits (57), Expect = 9.0
Identities = 7/37 (18%), Positives = 12/37 (32%)
Query: 19 EEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEE 55
E+++ E E +E + EE E
Sbjct: 531 EDKQIEALIEASKEAAAAKAAAAAAAAPLAEEPIAET 567
>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common
bacterial type. SMC (structural maintenance of
chromosomes) proteins bind DNA and act in organizing and
segregating chromosomes for partition. SMC proteins are
found in bacteria, archaea, and eukaryotes. This family
represents the SMC protein of most bacteria. The smc
gene is often associated with scpB (TIGR00281) and scpA
genes, where scp stands for segregation and condensation
protein. SMC was shown (in Caulobacter crescentus) to be
induced early in S phase but present and bound to DNA
throughout the cell cycle [Cellular processes, Cell
division, DNA metabolism, Chromosome-associated
proteins].
Length = 1179
Score = 26.9 bits (60), Expect = 2.6
Identities = 21/54 (38%), Positives = 29/54 (53%)
Query: 5 EEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEELQA 58
E + E+ +E + +E E + E EE +E EE EEE E E E EEL+A
Sbjct: 736 ARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEA 789
Score = 26.6 bits (59), Expect = 3.4
Identities = 24/57 (42%), Positives = 28/57 (49%)
Query: 3 KREEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEELQAG 59
+ E E E+ EE + +E E E E EE EE EE EEE E E E EE E
Sbjct: 737 RLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQ 793
Score = 26.2 bits (58), Expect = 5.2
Identities = 29/56 (51%), Positives = 34/56 (60%)
Query: 3 KREEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEELQA 58
REE EE +EE KE EEE EE E E EE+ +E E E EEE EE ++EL A
Sbjct: 237 LREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYA 292
Score = 25.8 bits (57), Expect = 7.3
Identities = 23/51 (45%), Positives = 30/51 (58%)
Query: 8 EEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEELQA 58
+E EE E EE+ EE +EE + E E +E E E EE E EE EE+L+
Sbjct: 333 DELAEELAELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQLET 383
Score = 25.4 bits (56), Expect = 8.3
Identities = 26/55 (47%), Positives = 30/55 (54%)
Query: 4 REEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEELQA 58
EE E K +E EE E EE+ EE EE E + E EE E E EE E EEL+
Sbjct: 325 LEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEELESRLEELEE 379
>gnl|CDD|218328 pfam04921, XAP5, XAP5, circadian clock regulator. This protein
is found in a wide range of eukaryotes. It is a nuclear
protein and is suggested to be DNA binding. In plants,
this family is essential for correct circadian clock
functioning by acting as a light-quality regulator
coordinating the activities of blue and red light
signalling pathways during plant growth - inhibiting
growth in red light but promoting growth in blue light.
Length = 233
Score = 26.9 bits (60), Expect = 2.6
Identities = 12/28 (42%), Positives = 20/28 (71%)
Query: 27 EEDEEEEEEDEEEEEEEEEEEEEEEEEE 54
+D+EEE+EDE E+E++ +E E +E
Sbjct: 14 GDDDEEEDEDEGEDEKKVPKESSEPDEA 41
Score = 26.5 bits (59), Expect = 2.8
Identities = 19/72 (26%), Positives = 32/72 (44%), Gaps = 18/72 (25%)
Query: 5 EEEEEKEEEEKEEEEEEEEEEEEEDEEEEEED------------------EEEEEEEEEE 46
+++EE++E+E E+E++ +E E DE + EE+E E
Sbjct: 15 DDDEEEDEDEGEDEKKVPKESSEPDEANVNPNKKKIGKNPSVDTSFLPDKAREEKEAELR 74
Query: 47 EEEEEEEEELQA 58
EE EE + Q
Sbjct: 75 EELREEFLKKQE 86
Score = 25.8 bits (57), Expect = 6.4
Identities = 10/28 (35%), Positives = 20/28 (71%)
Query: 28 EDEEEEEEDEEEEEEEEEEEEEEEEEEE 55
D++EEE+++E E+E++ +E E +E
Sbjct: 14 GDDDEEEDEDEGEDEKKVPKESSEPDEA 41
Score = 25.4 bits (56), Expect = 7.9
Identities = 10/28 (35%), Positives = 20/28 (71%)
Query: 16 EEEEEEEEEEEEEDEEEEEEDEEEEEEE 43
+++EEE+E+E EDE++ ++ E +E
Sbjct: 14 GDDDEEEDEDEGEDEKKVPKESSEPDEA 41
Score = 25.0 bits (55), Expect = 9.5
Identities = 17/70 (24%), Positives = 28/70 (40%), Gaps = 18/70 (25%)
Query: 7 EEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEE------------------EEEEEEEEE 48
++ EEE+++E E+E++ +E E +E EE+E E
Sbjct: 14 GDDDEEEDEDEGEDEKKVPKESSEPDEANVNPNKKKIGKNPSVDTSFLPDKAREEKEAEL 73
Query: 49 EEEEEEELQA 58
EE EE
Sbjct: 74 REELREEFLK 83
>gnl|CDD|217356 pfam03078, ATHILA, ATHILA ORF-1 family. ATHILA is a group of
Arabidopsis thaliana retrotransposons belonging to the
Ty3/gypsy family of the long terminal repeat (LTR) class
of eukaryotic retrotransposons. The central region of
ATHILA retrotransposons contains two or three open
reading frames (ORFs). This family represents the ORF1
product. The function of ORF1 is unknown.
Length = 456
Score = 26.9 bits (59), Expect = 2.8
Identities = 17/45 (37%), Positives = 24/45 (53%)
Query: 9 EKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEE 53
KE ++ E EE EED +EE+ED+E E E+ + EE
Sbjct: 359 SKEILGATDDIEHTEEATEEDVDEEDEDDEAELEKFDTSMYHFEE 403
Score = 26.1 bits (57), Expect = 5.5
Identities = 16/53 (30%), Positives = 24/53 (45%)
Query: 9 EKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEELQAGGH 61
+ E EE EE+ +EE+ED+E E E + EE E + + H
Sbjct: 366 TDDIEHTEEATEEDVDEEDEDDEAELEKFDTSMYHFEEHVPPARESKSLSEAH 418
>gnl|CDD|237046 PRK12297, obgE, GTPase CgtA; Reviewed.
Length = 424
Score = 27.0 bits (61), Expect = 2.8
Identities = 15/36 (41%), Positives = 19/36 (52%)
Query: 10 KEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEE 45
+E E EEEE EEE EEEE+D +E+
Sbjct: 327 EETPEFPLEEEEVEEEVYYKFEEEEKDFTITRDEDG 362
Score = 26.2 bits (59), Expect = 4.4
Identities = 15/36 (41%), Positives = 19/36 (52%)
Query: 17 EEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEE 52
EE E EEEE EEE EEEE++ +E+
Sbjct: 327 EETPEFPLEEEEVEEEVYYKFEEEEKDFTITRDEDG 362
Score = 25.8 bits (58), Expect = 6.5
Identities = 14/36 (38%), Positives = 20/36 (55%)
Query: 20 EEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEE 55
EE E E+EE EEE + EEEE++ +E+
Sbjct: 327 EETPEFPLEEEEVEEEVYYKFEEEEKDFTITRDEDG 362
Score = 25.8 bits (58), Expect = 6.9
Identities = 14/36 (38%), Positives = 20/36 (55%)
Query: 12 EEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEE 47
EE E EEEE EEE + EEE+++ +E+
Sbjct: 327 EETPEFPLEEEEVEEEVYYKFEEEEKDFTITRDEDG 362
Score = 25.4 bits (57), Expect = 9.2
Identities = 14/36 (38%), Positives = 19/36 (52%)
Query: 11 EEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEE 46
EE + EEEE EEE + EEEE + +E+
Sbjct: 327 EETPEFPLEEEEVEEEVYYKFEEEEKDFTITRDEDG 362
>gnl|CDD|236233 PRK08311, PRK08311, putative RNA polymerase sigma factor SigI;
Reviewed.
Length = 237
Score = 26.8 bits (60), Expect = 2.8
Identities = 21/48 (43%), Positives = 28/48 (58%)
Query: 10 KEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEELQ 57
KE + +EE+EEE++ E E EE +EEEE EE EE EE +
Sbjct: 91 KESKHNLVLSNSDEEDEEENDIEIELSLEEYQEEEENEERREEIEEFK 138
>gnl|CDD|223880 COG0810, TonB, Periplasmic protein TonB, links inner and outer
membranes [Cell envelope biogenesis, outer membrane].
Length = 244
Score = 26.7 bits (59), Expect = 3.2
Identities = 12/46 (26%), Positives = 21/46 (45%)
Query: 7 EEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEE 52
E EE + E E EE+ + E E E + +E+ + E++
Sbjct: 48 VLEAPTEEPQPEPEPPEEQPKPPTEPETPPEPTPPKPKEKPKPEKK 93
Score = 26.7 bits (59), Expect = 3.2
Identities = 11/46 (23%), Positives = 21/46 (45%)
Query: 6 EEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEE 51
E EE + E E EE+ + E E + + +E+ + E++
Sbjct: 48 VLEAPTEEPQPEPEPPEEQPKPPTEPETPPEPTPPKPKEKPKPEKK 93
Score = 26.3 bits (58), Expect = 4.4
Identities = 11/50 (22%), Positives = 23/50 (46%)
Query: 1 MGKREEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEE 50
+ + E EE + E E EE+ + + E E + +E+ + E++
Sbjct: 44 LAAKVLEAPTEEPQPEPEPPEEQPKPPTEPETPPEPTPPKPKEKPKPEKK 93
>gnl|CDD|221323 pfam11931, DUF3449, Domain of unknown function (DUF3449). This
presumed domain is functionally uncharacterized. This
domain is found in eukaryotes. This domain is typically
between 181 to 207 amino acids in length. This domain
has two conserved sequence motifs: PIP and CEICG. The
domain carries a zinc-finger domain of the C2H2-type.
Length = 187
Score = 26.5 bits (59), Expect = 3.2
Identities = 11/38 (28%), Positives = 20/38 (52%)
Query: 19 EEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEEL 56
EEE + +E E+ ED +++ +++EEE L
Sbjct: 33 EEERQASADESSEDASEDGSDDDSDDDEEEPIYNPLNL 70
>gnl|CDD|224009 COG1084, COG1084, Predicted GTPase [General function prediction
only].
Length = 346
Score = 26.5 bits (59), Expect = 3.4
Identities = 15/52 (28%), Positives = 20/52 (38%)
Query: 4 REEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEE 55
E+ EE E EE EE + ++ EE + E EE EE
Sbjct: 295 EEKLEEIEASVLEEGGEEPLKISATKGCGLDKLREEVRKTALEPLLEERSEE 346
>gnl|CDD|215369 PLN02685, PLN02685, iron superoxide dismutase.
Length = 299
Score = 26.5 bits (58), Expect = 3.5
Identities = 13/44 (29%), Positives = 22/44 (50%)
Query: 4 REEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEE 47
R E + ++E+EE E+EEE D E E + + + E +
Sbjct: 256 RLESAKARAAQREQEETRTEDEEEPDSEAVEMYLDSDIDVSEVD 299
Score = 25.3 bits (55), Expect = 9.8
Identities = 11/34 (32%), Positives = 18/34 (52%)
Query: 21 EEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEE 54
+ E+EE E+EEE D E E + + + E +
Sbjct: 266 QREQEETRTEDEEEPDSEAVEMYLDSDIDVSEVD 299
>gnl|CDD|241384 cd13230, PH1_SSRP1-like, Structure Specific Recognition protein 1
(SSRP1) Pleckstrin homology (PH) domain, repeat 1.
SSRP1 is a component of FACT (facilitator of chromatin
transcription), an essential chromatin reorganizing
factor. In yeast FACT (yFACT) is composed of three
proteins: Spt16/Cdc68, Pob3, and Nhp6. In metazoans the
Pob3 and Nhp6 orthologs are fused to form SSRP1/T160 in
human and mouse, respectively. The middle domain of the
Pob3 subunit (Pob3-M) has an unusual double pleckstrin
homology (PH) architecture. yFACT interacts in a
physiologically important way with the central
single-strand DNA binding factor RPA to promote a step
in DNA Replication. Coordinated function by yFACT and
RPA is important during nucleosome deposition. These
results support the model that the FACT family has an
essential role in constructing nucleosomes during DNA
replication, and suggest that RPA contributes to this
process. Members of this cd are composed of the first
PH-like repeat. PH domains have diverse functions, but
in general are involved in targeting proteins to the
appropriate cellular location or in the interaction with
a binding partner. They share little sequence
conservation, but all have a common fold, which is
electrostatically polarized. Less than 10% of PH domains
bind phosphoinositide phosphates (PIPs) with high
affinity and specificity. PH domains are distinguished
from other PIP-binding domains by their specific
high-affinity binding to PIPs with two vicinal phosphate
groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3
which results in targeting some PH domain proteins to
the plasma membrane. A few display strong specificity in
lipid binding. Any specificity is usually determined by
loop regions or insertions in the N-terminus of the
domain, which are not conserved across all PH domains.
PH domains are found in cellular signaling proteins such
as serine/threonine kinase, tyrosine kinases, regulators
of G-proteins, endocytotic GTPases, adaptors, as well as
cytoskeletal associated molecules and in lipid
associated enzymes.
Length = 137
Score = 26.0 bits (58), Expect = 3.5
Identities = 12/31 (38%), Positives = 19/31 (61%)
Query: 14 EKEEEEEEEEEEEEEDEEEEEEDEEEEEEEE 44
+K+EE E E EE+ EE+ + + E+E E
Sbjct: 85 DKDEEIELELNLTEEELEEKYKGKLEKEYEG 115
>gnl|CDD|225638 COG3096, MukB, Uncharacterized protein involved in chromosome
partitioning [Cell division and chromosome
partitioning].
Length = 1480
Score = 26.8 bits (59), Expect = 3.6
Identities = 19/52 (36%), Positives = 30/52 (57%)
Query: 7 EEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEELQA 58
++EK E + + EE EE++E EE +E +EE E E E E +EL++
Sbjct: 346 QQEKIERYQADLEELTIRLEEQNEVVEEANERQEENEARAEAAELEVDELKS 397
>gnl|CDD|240412 PTZ00420, PTZ00420, coronin; Provisional.
Length = 568
Score = 26.5 bits (58), Expect = 3.8
Identities = 11/50 (22%), Positives = 18/50 (36%)
Query: 6 EEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEE 55
+E+E E+ + E +E+ E EEE + E E
Sbjct: 462 KEKELLTEKGGAQFSSANSLERGADEDYLIVNGTNEPYEEEVIKTNENEN 511
Score = 25.7 bits (56), Expect = 8.3
Identities = 12/50 (24%), Positives = 19/50 (38%)
Query: 5 EEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEE 54
+E+E E+ + E DE+ + E EEE + E E
Sbjct: 462 KEKELLTEKGGAQFSSANSLERGADEDYLIVNGTNEPYEEEVIKTNENEN 511
>gnl|CDD|173534 PTZ00341, PTZ00341, Ring-infected erythrocyte surface antigen;
Provisional.
Length = 1136
Score = 26.7 bits (58), Expect = 3.9
Identities = 24/49 (48%), Positives = 28/49 (57%)
Query: 7 EEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEE 55
EE EE +E EE EE EE EE EE+ EE EE ++E EE EE
Sbjct: 1085 EENVEENVEEIEENVEENVEENAEENAEENAEENAEEYDDENPEEHNEE 1133
Score = 26.3 bits (57), Expect = 5.8
Identities = 26/51 (50%), Positives = 29/51 (56%)
Query: 5 EEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEE 55
E EE EE +E EE EE EE+ EE EE+ EE EE EE EE EE
Sbjct: 1067 ENVEEIEENIEENIEENVEENVEENVEEIEENVEENVEENAEENAEENAEE 1117
Score = 25.9 bits (56), Expect = 6.4
Identities = 24/49 (48%), Positives = 28/49 (57%)
Query: 7 EEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEE 55
EE EE +E EE EE EE EE EE+ EE EE EE EE ++E
Sbjct: 1077 EENIEENVEENVEENVEEIEENVEENVEENAEENAEENAEENAEEYDDE 1125
Score = 25.9 bits (56), Expect = 7.1
Identities = 24/49 (48%), Positives = 28/49 (57%)
Query: 7 EEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEE 55
EE EE +E EE EE EE EE EE+ EE EE EE ++E EE
Sbjct: 1081 EENVEENVEENVEEIEENVEENVEENAEENAEENAEENAEEYDDENPEE 1129
Score = 25.9 bits (56), Expect = 7.6
Identities = 26/51 (50%), Positives = 28/51 (54%)
Query: 5 EEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEE 55
E EE EE +E EE EE EE EE EE+ EE EE EE EE EE
Sbjct: 1071 EIEENIEENIEENVEENVEENVEEIEENVEENVEENAEENAEENAEENAEE 1121
Score = 25.5 bits (55), Expect = 8.4
Identities = 23/48 (47%), Positives = 28/48 (58%)
Query: 7 EEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEE 54
EE EE E+ EE EE EE EE EE+ EE ++E EE EE +E
Sbjct: 1089 EENVEEIEENVEENVEENAEENAEENAEENAEEYDDENPEEHNEEYDE 1136
Score = 25.5 bits (55), Expect = 8.5
Identities = 26/53 (49%), Positives = 32/53 (60%)
Query: 5 EEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEELQ 57
E EE EE +E EE EE +EE+ EE EE+ EE EE EE EE EE++
Sbjct: 1044 EIEENAEENVEENIEENIEEYDEENVEEIEENIEENIEENVEENVEENVEEIE 1096
Score = 25.5 bits (55), Expect = 9.1
Identities = 27/51 (52%), Positives = 32/51 (62%)
Query: 5 EEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEE 55
E EE +EE EE EE EE +EE+ EE EE+ EE EE EE EE +EE
Sbjct: 1017 ENVEEYDEENVEEVEENVEEYDEENVEEIEENAEENVEENIEENIEEYDEE 1067
Score = 25.5 bits (55), Expect = 9.6
Identities = 23/51 (45%), Positives = 29/51 (56%)
Query: 5 EEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEE 55
E EE EE +E EE EE EE+ EE E+ EE ++E EE EE +E
Sbjct: 1086 ENVEENVEEIEENVEENVEENAEENAEENAEENAEEYDDENPEEHNEEYDE 1136
>gnl|CDD|220735 pfam10408, Ufd2P_core, Ubiquitin elongating factor core. This is
the most conserved part of the core region of Ufd2P
ubiquitin elongating factor or E4, running from helix
alpha-11 to alpha-38. It consists of 31 helices of
variable length connected by loops of variable size
forming a compact unit; the helical packing pattern of
the compact unit consists of five structural repeats
that resemble tandem Armadillo (ARM) repeats. This
domain is involved in ubiquitination as it binds Cdc48p
and escorts ubiquitinated proteins from Cdc48p to the
proteasome for degradation. The core is structurally
similar to the nuclear transporter protein
importin-alpha. The core is associated with the U-box at
the C-terminus, pfam04564, which has ligase activity.
Length = 625
Score = 26.5 bits (59), Expect = 3.9
Identities = 15/53 (28%), Positives = 23/53 (43%), Gaps = 6/53 (11%)
Query: 29 DEEEEEEDEEEEEEEEEEEEEEEEEEELQAGGHGIAICQCKSAKIVTTKTIPM 81
++E +D E E +EE EE E E Q Q KS + +T+ +
Sbjct: 461 QLQKELQDRAEWESLSQEEREERESELRQLER------QAKSYLQLANETVKL 507
>gnl|CDD|219405 pfam07418, PCEMA1, Acidic phosphoprotein precursor PCEMA1. This
family consists of several acidic phosphoprotein
precursor PCEMA1 sequences which appear to be found
exclusively in Plasmodium chabaudi. PCEMA1 is an antigen
that is associated with the membrane of the infected
erythrocyte throughout the entire intraerythrocytic
cycle. The exact function of this family is unclear.
Length = 286
Score = 26.4 bits (58), Expect = 4.0
Identities = 17/52 (32%), Positives = 30/52 (57%)
Query: 1 MGKREEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEE 52
+ E + E +E+ + E E + ++ +E E E++ E+E EEE EE+E E
Sbjct: 230 LKDGENDNEVKEKIRREYREWKGDKANTNETEIEDESEDEYEEEAGEEQENE 281
>gnl|CDD|240419 PTZ00440, PTZ00440, reticulocyte binding protein 2-like protein;
Provisional.
Length = 2722
Score = 26.7 bits (59), Expect = 4.0
Identities = 15/59 (25%), Positives = 32/59 (54%)
Query: 3 KREEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEELQAGGH 61
K + EE ++E E+ E E +E+ +EE ++++ ++EEE++ +E E+
Sbjct: 2571 KAKIEESRKERERIESETQEDNTDEEQINRQQQERLQKEEEQKAYSQERLNREVSGTDD 2629
>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and
chromosome partitioning].
Length = 1163
Score = 26.6 bits (59), Expect = 4.0
Identities = 20/56 (35%), Positives = 27/56 (48%)
Query: 3 KREEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEELQA 58
+ EE E+ E EE +EE EE+ EE +E E EE E E E E++
Sbjct: 342 RETLLEELEQLLAELEEAKEELEEKLSALLEELEELFEALREELAELEAELAEIRN 397
Score = 25.8 bits (57), Expect = 6.5
Identities = 23/55 (41%), Positives = 32/55 (58%)
Query: 3 KREEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEELQ 57
+ EE E + EE +E EE +E+ E EE EE + EE E+ E EE +EEL+
Sbjct: 310 RLEELENELEELEERLEELKEKIEALKEELEERETLLEELEQLLAELEEAKEELE 364
Score = 25.8 bits (57), Expect = 7.2
Identities = 23/57 (40%), Positives = 31/57 (54%)
Query: 2 GKREEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEELQA 58
+EE EE+E +E E+ E EE ++E EE+ EE EE E EE EL+A
Sbjct: 334 ALKEELEERETLLEELEQLLAELEEAKEELEEKLSALLEELEELFEALREELAELEA 390
Score = 25.4 bits (56), Expect = 8.9
Identities = 24/55 (43%), Positives = 31/55 (56%)
Query: 2 GKREEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEEL 56
+ EE +EK E KEE EE E EE ++ E +E +EE EE+ EE EEL
Sbjct: 323 ERLEELKEKIEALKEELEERETLLEELEQLLAELEEAKEELEEKLSALLEELEEL 377
>gnl|CDD|223097 COG0018, ArgS, Arginyl-tRNA synthetase [Translation, ribosomal
structure and biogenesis].
Length = 577
Score = 26.4 bits (59), Expect = 4.0
Identities = 19/56 (33%), Positives = 23/56 (41%), Gaps = 8/56 (14%)
Query: 9 EKEEEEKEEEEEEEEEEEEED--------EEEEEEDEEEEEEEEEEEEEEEEEEEL 56
EK E E + E EE+ DEEE EE E+ E +EE EL
Sbjct: 178 EKRGREALGLTPEPDGYLGEYYVKIAKDLEEDPGNDEEEAREEVEKLESGDEEAEL 233
Score = 26.1 bits (58), Expect = 5.2
Identities = 17/53 (32%), Positives = 25/53 (47%)
Query: 3 KREEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEE 55
KR E E + E + +D EE+ ++EEE EE E+ E +EE
Sbjct: 179 KRGREALGLTPEPDGYLGEYYVKIAKDLEEDPGNDEEEAREEVEKLESGDEEA 231
Score = 25.7 bits (57), Expect = 6.9
Identities = 14/51 (27%), Positives = 24/51 (47%)
Query: 4 REEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEE 54
RE E + E + ++ +E+ ++EE EE E+ E +EE E
Sbjct: 182 REALGLTPEPDGYLGEYYVKIAKDLEEDPGNDEEEAREEVEKLESGDEEAE 232
>gnl|CDD|215637 PLN03223, PLN03223, Polycystin cation channel protein; Provisional.
Length = 1634
Score = 26.4 bits (58), Expect = 4.0
Identities = 13/32 (40%), Positives = 18/32 (56%)
Query: 26 EEEDEEEEEEDEEEEEEEEEEEEEEEEEEELQ 57
E DEEEEE EE+E+ +E +E L+
Sbjct: 1475 ENPDEEEEEAFREEKEKVFTYLNKELDEAGLK 1506
>gnl|CDD|235366 PRK05218, PRK05218, heat shock protein 90; Provisional.
Length = 613
Score = 26.2 bits (59), Expect = 4.0
Identities = 13/24 (54%), Positives = 18/24 (75%)
Query: 29 DEEEEEEDEEEEEEEEEEEEEEEE 52
D + +EDEEE+EE+EE EEE +
Sbjct: 473 DLDLGKEDEEEKEEKEEAEEEFKP 496
Score = 26.2 bits (59), Expect = 5.1
Identities = 12/25 (48%), Positives = 19/25 (76%)
Query: 32 EEEEDEEEEEEEEEEEEEEEEEEEL 56
+ + +E+EEE+EE+EE EEE + L
Sbjct: 473 DLDLGKEDEEEKEEKEEAEEEFKPL 497
>gnl|CDD|177802 PLN00221, PLN00221, tubulin alpha chain; Provisional.
Length = 450
Score = 26.3 bits (58), Expect = 4.0
Identities = 17/39 (43%), Positives = 19/39 (48%)
Query: 16 EEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEE 54
E EE E E ED E+D EE E E E +E EE
Sbjct: 411 EGMEEGEFSEAREDLAALEKDYEEVGAESAEGEGDEGEE 449
>gnl|CDD|215562 PLN03078, PLN03078, Putative tRNA pseudouridine synthase;
Provisional.
Length = 513
Score = 26.4 bits (58), Expect = 4.1
Identities = 13/50 (26%), Positives = 22/50 (44%)
Query: 9 EKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEELQA 58
E E EE E EE+EED +E E+ + + + +++A
Sbjct: 271 EMSSSESEENHGEISEEDEEDLSFSSIPSGSSDENEDILKFQSSQVQIRA 320
>gnl|CDD|218744 pfam05781, MRVI1, MRVI1 protein. This family consists of mammalian
MRVI1 proteins which are related to the
lymphoid-restricted membrane protein (JAW1) and the IP3
receptor associated cGMP kinase substrates A and B
(IRAGA and IRAGB). The function of MRVI1 is unknown
although mutations in the Mrvi1 gene induces myeloid
leukaemia by altering the expression of a gene important
for myeloid cell growth and/or differentiation so it has
been speculated that Mrvi1 is a tumour suppressor gene.
IRAG is very similar in sequence to MRVI1 and is an
essential NO/cGKI-dependent regulator of IP3-induced
calcium release. Activation of cGKI decreases
IP3-stimulated elevations in intracellular calcium,
induces smooth muscle relaxation and contributes to the
antiproliferative and pro-apoptotic effects of NO/cGMP.
Jaw1 is a member of a class of proteins with
COOH-terminal hydrophobic membrane anchors and is
structurally similar to proteins involved in vesicle
targeting and fusion. This suggests that the function
and/or the structure of the ER in lymphocytes may be
modified by lymphoid-restricted resident ER proteins.
Length = 538
Score = 26.5 bits (58), Expect = 4.2
Identities = 14/53 (26%), Positives = 25/53 (47%)
Query: 4 REEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEEL 56
EEE+K ++ ++ E E EE E + +E E EE ++E+ +
Sbjct: 413 DAEEEKKTKKLQDLREPEGEEAVERTRKPSLSEEVAETEEWDKEQRSSKLASW 465
>gnl|CDD|223616 COG0542, clpA, ATP-binding subunits of Clp protease and DnaK/DnaJ
chaperones [Posttranslational modification, protein
turnover, chaperones].
Length = 786
Score = 26.5 bits (59), Expect = 4.2
Identities = 17/51 (33%), Positives = 31/51 (60%)
Query: 4 REEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEE 54
+ E EKE E+E++E+E++ +E + +E E E+E E E +E++ E
Sbjct: 411 AQLEIEKEALEREQDEKEKKLIDEIIKLKEGRIPELEKELEAEVDEDDIAE 461
>gnl|CDD|219939 pfam08619, Nha1_C, Alkali metal cation/H+ antiporter Nha1 C
terminus. The C terminus of the plasma membrane Nha1
antiporter plays an important role in the immediate cell
response to hypo-osmotic shock which prevents an
execessive loss of ions and water. This domain is found
with pfam00999.
Length = 430
Score = 26.3 bits (58), Expect = 4.3
Identities = 13/58 (22%), Positives = 23/58 (39%)
Query: 5 EEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEELQAGGHG 62
E E ++ E D E+E+ + ++ + ++EEE E L A G
Sbjct: 363 EASERRKNREPSSSSPPSRPRSRRDSEDEDTERDDSDSDDEEETPAERRRRLAALGEL 420
Score = 25.9 bits (57), Expect = 6.4
Identities = 11/54 (20%), Positives = 18/54 (33%)
Query: 5 EEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEELQA 58
E E + + E+ E + E DE EE + E+E +
Sbjct: 110 ENSAESDNTSYGLSKLAEDSENIDVRPVYESDERSGISEEGSRPSKLREQEQRP 163
>gnl|CDD|200340 TIGR03927, T7SS_EssA_Firm, type VII secretion protein EssA.
Members of this family are associated with type VII
secretion of WXG100 family targets in the Firmicutes,
but not in the Actinobacteria. This highly divergent
protein family consists largely of a central region of
highly polar low-complexity sequence containing
occasional LF motifs in weak repeats about 17 residues
in length, flanked by hydrophobic N- and C-terminal
regions [Protein fate, Protein and peptide secretion
and trafficking].
Length = 150
Score = 25.8 bits (57), Expect = 4.5
Identities = 12/48 (25%), Positives = 27/48 (56%)
Query: 7 EEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEE 54
EK++ E + +EE E +++ EE ++ ++ +E+ E+EE +
Sbjct: 30 RYEKKDIEINTDYLQEETELDKELFTPEEQKKITFQKHKEKPEQEELK 77
>gnl|CDD|240272 PTZ00109, PTZ00109, DNA gyrase subunit b; Provisional.
Length = 903
Score = 26.4 bits (58), Expect = 4.5
Identities = 14/53 (26%), Positives = 23/53 (43%)
Query: 7 EEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEELQAG 59
K+ KE EE+ D + E EDE+ + + E +E E + + G
Sbjct: 760 LLNKDYSSKETTRSVEEKGNAPDLDNEYEDEKLDNKNMRENNVDEVELKTELG 812
>gnl|CDD|236278 PRK08506, PRK08506, replicative DNA helicase; Provisional.
Length = 472
Score = 26.1 bits (58), Expect = 4.6
Identities = 13/33 (39%), Positives = 19/33 (57%)
Query: 3 KREEEEEKEEEEKEEEEEEEEEEEEEDEEEEEE 35
K EE+EKE++ K+E +EE + EE E
Sbjct: 391 KEREEKEKEKKAKKEGKEERRIHFQNKSIEEAE 423
>gnl|CDD|223079 PHA03419, PHA03419, E4 protein; Provisional.
Length = 200
Score = 26.1 bits (57), Expect = 4.6
Identities = 16/58 (27%), Positives = 31/58 (53%)
Query: 2 GKREEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEELQAG 59
G +++E++K+E EK + E+ ++ E + E E E E+ E+ E E++ G
Sbjct: 91 GGKKKEKKKKETEKPAQGGEKPDQGPEAKGEGEGHEPEDPPPEDTPPPPGGEGEVEGG 148
>gnl|CDD|224173 COG1253, TlyC, Hemolysins and related proteins containing CBS
domains [General function prediction only].
Length = 429
Score = 26.1 bits (58), Expect = 4.7
Identities = 16/36 (44%), Positives = 17/36 (47%)
Query: 22 EEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEELQ 57
E EEE EEE E E EE EEEE E +
Sbjct: 163 EPVEEEALTSTEEELELVSESAEEGVLEEEEREMIN 198
>gnl|CDD|235378 PRK05256, PRK05256, condesin subunit E; Provisional.
Length = 238
Score = 26.1 bits (58), Expect = 4.7
Identities = 11/25 (44%), Positives = 17/25 (68%)
Query: 28 EDEEEEEEDEEEEEEEEEEEEEEEE 52
E+ ++E +E EEE+ +EEEEE
Sbjct: 214 ENHLQQESSLNDETEEEQPDEEEEE 238
Score = 26.1 bits (58), Expect = 4.8
Identities = 11/25 (44%), Positives = 16/25 (64%)
Query: 19 EEEEEEEEEEDEEEEEEDEEEEEEE 43
E ++E ++E EEE +EEEEE
Sbjct: 214 ENHLQQESSLNDETEEEQPDEEEEE 238
Score = 26.1 bits (58), Expect = 4.9
Identities = 10/25 (40%), Positives = 16/25 (64%)
Query: 29 DEEEEEEDEEEEEEEEEEEEEEEEE 53
+ ++E +E EEE+ +EEEEE
Sbjct: 214 ENHLQQESSLNDETEEEQPDEEEEE 238
Score = 25.7 bits (57), Expect = 7.2
Identities = 11/25 (44%), Positives = 16/25 (64%)
Query: 17 EEEEEEEEEEEEDEEEEEEDEEEEE 41
E ++E ++ EEE+ DEEEEE
Sbjct: 214 ENHLQQESSLNDETEEEQPDEEEEE 238
Score = 25.3 bits (56), Expect = 7.4
Identities = 10/25 (40%), Positives = 16/25 (64%)
Query: 22 EEEEEEEDEEEEEEDEEEEEEEEEE 46
E ++E +E +EE+ +EEEEE
Sbjct: 214 ENHLQQESSLNDETEEEQPDEEEEE 238
Score = 25.3 bits (56), Expect = 8.0
Identities = 10/25 (40%), Positives = 15/25 (60%)
Query: 24 EEEEEDEEEEEEDEEEEEEEEEEEE 48
E + E ++ EEE+ +EEEEE
Sbjct: 214 ENHLQQESSLNDETEEEQPDEEEEE 238
Score = 25.3 bits (56), Expect = 8.2
Identities = 12/25 (48%), Positives = 16/25 (64%)
Query: 18 EEEEEEEEEEEDEEEEEEDEEEEEE 42
E ++E DE EEE+ +EEEEE
Sbjct: 214 ENHLQQESSLNDETEEEQPDEEEEE 238
Score = 25.3 bits (56), Expect = 9.1
Identities = 10/25 (40%), Positives = 16/25 (64%)
Query: 21 EEEEEEEEDEEEEEEDEEEEEEEEE 45
E ++E +E E+E+ +EEEEE
Sbjct: 214 ENHLQQESSLNDETEEEQPDEEEEE 238
>gnl|CDD|236658 PRK10153, PRK10153, DNA-binding transcriptional activator CadC;
Provisional.
Length = 517
Score = 26.2 bits (58), Expect = 4.8
Identities = 11/50 (22%), Positives = 15/50 (30%)
Query: 23 EEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEELQAGGHGIAICQCKSAK 72
EEE E+ E E E + A A+CQ +
Sbjct: 108 SEEEGEEILASSPPPIPEAVPATAEPSESANAQFPAPPLTRAVCQSPAKS 157
>gnl|CDD|224881 COG1970, MscL, Large-conductance mechanosensitive channel [Cell
envelope biogenesis, outer membrane].
Length = 130
Score = 25.7 bits (57), Expect = 4.9
Identities = 7/25 (28%), Positives = 10/25 (40%)
Query: 32 EEEEDEEEEEEEEEEEEEEEEEEEL 56
+ + E+EE E EE L
Sbjct: 95 NKLRRKLEKEEPEAPAPAPPAEEVL 119
>gnl|CDD|117592 pfam09026, Cenp-B_dimeris, Centromere protein B dimerisation
domain. The centromere protein B (CENP-B) dimerisation
domain is composed of two alpha-helices, which are
folded into an antiparallel configuration. Dimerisation
of CENP-B is mediated by this domain, in which monomers
dimerise to form a symmetrical, antiparallel,
four-helix bundle structure with a large hydrophobic
patch in which 23 residues of one monomer form van der
Waals contacts with the other monomer. This CENP-B
dimer configuration may be suitable for capturing two
distant CENP-B boxes during centromeric heterochromatin
formation.
Length = 101
Score = 25.5 bits (55), Expect = 5.0
Identities = 14/34 (41%), Positives = 30/34 (88%)
Query: 21 EEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEE 54
E EE+ + D +EEE+D++E+EE+++E+++E+++E
Sbjct: 7 EGEEDSDSDSDEEEDDDDEDEEDDDEDDDEDDDE 40
Score = 25.5 bits (55), Expect = 5.4
Identities = 14/34 (41%), Positives = 30/34 (88%)
Query: 14 EKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEE 47
E EE+ + + +EEE+D++E+EED++E+++E+++E
Sbjct: 7 EGEEDSDSDSDEEEDDDDEDEEDDDEDDDEDDDE 40
Score = 24.7 bits (53), Expect = 9.8
Identities = 15/45 (33%), Positives = 35/45 (77%)
Query: 20 EEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEELQAGGHGIA 64
E EE+ + + +EEE++D+E+EE+++E+++E+++E + + G +A
Sbjct: 7 EGEEDSDSDSDEEEDDDDEDEEDDDEDDDEDDDEVPVPSFGEAMA 51
Score = 24.7 bits (53), Expect = 9.9
Identities = 14/34 (41%), Positives = 29/34 (85%)
Query: 5 EEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEE 38
E EE+ + + EEE++++E+EE++DE+++E+D+E
Sbjct: 7 EGEEDSDSDSDEEEDDDDEDEEDDDEDDDEDDDE 40
>gnl|CDD|215276 PLN02500, PLN02500, cytochrome P450 90B1.
Length = 490
Score = 26.0 bits (57), Expect = 5.1
Identities = 11/22 (50%), Positives = 15/22 (68%)
Query: 8 EEKEEEEKEEEEEEEEEEEEED 29
E K EE E+ +EE+E EE+D
Sbjct: 243 ERKMEERIEKLKEEDESVEEDD 264
>gnl|CDD|220777 pfam10486, PI3K_1B_p101, Phosphoinositide 3-kinase gamma adapter
protein p101 subunit. Class I PI3Ks are dual-specific
lipid and protein kinases involved in numerous
intracellular signaling pathways. Class IB PI3K,
p110gamma, is mainly activated by seven-transmembrane
G-protein-coupled receptors (GPCRs), through its
regulatory subunit p101 and G-protein beta-gamma
subunits.
Length = 856
Score = 26.1 bits (57), Expect = 5.1
Identities = 10/19 (52%), Positives = 13/19 (68%)
Query: 43 EEEEEEEEEEEEELQAGGH 61
E+EE EEEEEE+ + G
Sbjct: 313 SEDEEVEEEEEEDDETDGL 331
>gnl|CDD|237628 PRK14156, PRK14156, heat shock protein GrpE; Provisional.
Length = 177
Score = 25.9 bits (57), Expect = 5.3
Identities = 22/52 (42%), Positives = 28/52 (53%)
Query: 7 EEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEELQA 58
EE + EE EEE E E EE +E EE E+ E E E +E E + L+A
Sbjct: 2 SEEIKNEEVEEEVEATETEETVEEVVEETPEKSELELANERADEFENKYLRA 53
>gnl|CDD|237621 PRK14139, PRK14139, heat shock protein GrpE; Provisional.
Length = 185
Score = 25.7 bits (57), Expect = 5.3
Identities = 10/45 (22%), Positives = 16/45 (35%)
Query: 14 EKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEELQA 58
E ++ E+E EE + E+ E E E +A
Sbjct: 2 ENTQQNPSEQEAEEAGAAAQAAAAAAAAAEDAAPALEAELAEAEA 46
>gnl|CDD|218581 pfam05416, Peptidase_C37, Southampton virus-type processing
peptidase. Corresponds to Merops family C37.
Norwalk-like viruses (NLVs), including the Southampton
virus, cause acute non-bacterial gastroenteritis in
humans. The NLV genome encodes three open reading frames
(ORFs). ORF1 encodes a polyprotein, which is processed
by the viral protease into six proteins.
Length = 535
Score = 26.0 bits (57), Expect = 5.4
Identities = 15/36 (41%), Positives = 20/36 (55%)
Query: 2 GKREEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDE 37
GK +E E+ E+ EEE E + E D EEEE +
Sbjct: 270 GKYSIQEYLEDRERYEEELAERQATEADFCEEEEAK 305
Score = 26.0 bits (57), Expect = 5.9
Identities = 19/54 (35%), Positives = 28/54 (51%), Gaps = 3/54 (5%)
Query: 7 EEEKEEEEKEEEEEEEE---EEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEELQ 57
+EE +E +K EE + +E ED E EE+ E + E + EEEE + Q
Sbjct: 255 DEEYDEYKKIREERGGKYSIQEYLEDRERYEEELAERQATEADFCEEEEAKIRQ 308
>gnl|CDD|129661 TIGR00570, cdk7, CDK-activating kinase assembly factor MAT1. All
proteins in this family for which functions are known
are cyclin dependent protein kinases that are components
of TFIIH, a complex that is involved in nucleotide
excision repair and transcription initiation. Also known
as MAT1 (menage a trois 1). This family is based on the
phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis,
Stanford University) [DNA metabolism, DNA replication,
recombination, and repair].
Length = 309
Score = 25.9 bits (57), Expect = 5.4
Identities = 17/47 (36%), Positives = 31/47 (65%)
Query: 10 KEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEEL 56
KE+ +E+EE EE E E++EEE+ ++EEEE++ + + ++ L
Sbjct: 137 KEKSTREQEELEEALEFEKEEEEQRRLLLQKEEEEQQMNKRKNKQAL 183
>gnl|CDD|235937 PRK07111, PRK07111, anaerobic ribonucleoside triphosphate
reductase; Provisional.
Length = 735
Score = 26.1 bits (58), Expect = 5.5
Identities = 15/54 (27%), Positives = 25/54 (46%)
Query: 5 EEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEELQA 58
E +E +EKE EEEE + ++ +E+ +E E+E + QA
Sbjct: 250 ELGVGEEVDEKESLNEEEELLLLLLALDFNIAKKAQEKADELAEKETRKRTYQA 303
Score = 25.3 bits (56), Expect = 9.4
Identities = 13/53 (24%), Positives = 24/53 (45%)
Query: 6 EEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEELQA 58
EE E+E EEEE D ++ +E+ +E E+E + + ++
Sbjct: 254 GEEVDEKESLNEEEELLLLLLALDFNIAKKAQEKADELAEKETRKRTYQAMEG 306
>gnl|CDD|219290 pfam07084, Spot_14, Thyroid hormone-inducible hepatic protein Spot
14. This family consists of several thyroid
hormone-inducible hepatic protein (Spot 14 or S14)
sequences. Mainly expressed in tissues that synthesise
triglycerides, the mRNA coding for Spot 14 has been
shown to be increased in rat liver by insulin, dietary
carbohydrates, glucose in hepatocyte culture medium, as
well as thyroid hormone. In contrast, dietary fats and
polyunsaturated fatty acids, have been shown to decrease
the amount of Spot 14 mRNA, while an elevated level of
cAMP acts as a dominant negative factor. In addition,
liver-specific factors or chromatin organisation of the
gene have been shown to contribute to the regulation of
its expression. Spot 14 protein is thought to be
required for induction of hepatic lipogenesis.
Length = 160
Score = 25.5 bits (56), Expect = 5.5
Identities = 14/27 (51%), Positives = 16/27 (59%)
Query: 5 EEEEEKEEEEKEEEEEEEEEEEEEDEE 31
E EKE++ E EE EEEE E D E
Sbjct: 95 GEMSEKEKDANESEEAEEEELGELDLE 121
>gnl|CDD|215620 PLN03187, PLN03187, meiotic recombination protein DMC1 homolog;
Provisional.
Length = 344
Score = 25.9 bits (57), Expect = 5.7
Identities = 14/54 (25%), Positives = 26/54 (48%)
Query: 28 EDEEEEEEDEEEEEEEEEEEEEEEEEEELQAGGHGIAICQCKSAKIVTTKTIPM 81
DE + + E EE +EEE+ E ++ + G + + + + A I T + M
Sbjct: 7 ADEGAQLQLVEAEEVDEEEDLFESIDKLISQGINAGDVKKLQDAGIYTCNGLMM 60
>gnl|CDD|219746 pfam08208, RNA_polI_A34, DNA-directed RNA polymerase I subunit
RPA34.5. This is a family of proteins conserved from
yeasts to human. Subunit A34.5 of RNA polymerase I is a
non-essential subunit which is thought to help Pol I
overcome topological constraints imposed on ribosomal
DNA during the process of transcription.
Length = 193
Score = 25.8 bits (57), Expect = 5.8
Identities = 17/53 (32%), Positives = 35/53 (66%)
Query: 5 EEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEELQ 57
E E E+E + E+E E EEEE +E++++ E ++E++E+++++E+ E
Sbjct: 130 SESETSEKETTAKVEKEAEVEEEEKKEKKKKKEVKKEKKEKKDKKEKMVEPKG 182
Score = 25.8 bits (57), Expect = 6.0
Identities = 16/51 (31%), Positives = 36/51 (70%)
Query: 5 EEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEE 55
E E E E+E + E+E E EEEE++++++++E ++E++E+++++E
Sbjct: 125 PSELGSESETSEKETTAKVEKEAEVEEEEKKEKKKKKEVKKEKKEKKDKKE 175
Score = 25.1 bits (55), Expect = 9.1
Identities = 15/51 (29%), Positives = 35/51 (68%)
Query: 5 EEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEE 55
E E++ + E+E E EEEE++E ++++E +E++E+++++E+ E +
Sbjct: 133 ETSEKETTAKVEKEAEVEEEEKKEKKKKKEVKKEKKEKKDKKEKMVEPKGS 183
>gnl|CDD|219285 pfam07065, D123, D123. This family contains a number of
eukaryotic D123 proteins approximately 330 residues
long. It has been shown that mutated variants of D123
exhibit temperature-dependent differences in their
degradation rate. D123 proteins are regulators of eIF2,
the central regulator of translational initiation.
Length = 295
Score = 25.7 bits (57), Expect = 5.9
Identities = 14/50 (28%), Positives = 23/50 (46%)
Query: 7 EEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEEL 56
EE +E + E + ED+++E+ D E E ++ E EEL
Sbjct: 34 SEESSLPIYQESSDNEYSDWFEDDDDEDTDVTRPEFPELHQKIREAIEEL 83
>gnl|CDD|234338 TIGR03742, PRTRC_F, PRTRC system protein F. A novel genetic system
characterized by seven (usually) major proteins,
including a ParB homolog and a ThiF homolog, is commonly
found on plasmids or in bacterial chromosomal regions
near phage, plasmid, or transposon markers. It is most
common among the beta Proteobacteria. We designate the
system PRTRC, or ParB-Related,ThiF-Related Cassette.
This protein family is designated protein F. It is the
most divergent of the families.
Length = 342
Score = 25.9 bits (57), Expect = 6.0
Identities = 13/36 (36%), Positives = 19/36 (52%)
Query: 12 EEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEE 47
E E +EEE EE +E+DE+ E E+ E+
Sbjct: 164 EGETDEEEALEELCDEDDEDREAYLPSVVEQALLED 199
Score = 25.5 bits (56), Expect = 9.0
Identities = 12/36 (33%), Positives = 19/36 (52%)
Query: 16 EEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEE 51
E E +EEE EE +E++E+ E E+ E+
Sbjct: 164 EGETDEEEALEELCDEDDEDREAYLPSVVEQALLED 199
>gnl|CDD|224415 COG1498, SIK1, Protein implicated in ribosomal biogenesis, Nop56p
homolog [Translation, ribosomal structure and
biogenesis].
Length = 395
Score = 25.8 bits (57), Expect = 6.0
Identities = 12/58 (20%), Positives = 18/58 (31%)
Query: 2 GKREEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEELQAG 59
+ E + EEE E E E E E E++ E + +L
Sbjct: 1 MSLVDFEPFPSDADALEEELLISEGGVSSALEVNLELELIEGEKKLELVVCDTKLGNA 58
>gnl|CDD|219009 pfam06404, PSK, Phytosulfokine precursor protein (PSK). This
family consists of several plant specific
phytosulfokine precursor proteins. Phytosulfokines, are
active as either a pentapeptide or a C-terminally
truncated tetrapeptide. These compounds were first
isolated because of their ability to stimulate cell
division in somatic embryo cultures of Asparagus
officinalis.
Length = 74
Score = 24.6 bits (54), Expect = 6.2
Identities = 11/30 (36%), Positives = 15/30 (50%)
Query: 26 EEEDEEEEEEDEEEEEEEEEEEEEEEEEEE 55
E + E E + +E+E E E E EEE
Sbjct: 24 HESSKIEAAESSKVDEDEVVSECEGEGEEE 53
Score = 24.6 bits (54), Expect = 6.3
Identities = 12/31 (38%), Positives = 15/31 (48%)
Query: 2 GKREEEEEKEEEEKEEEEEEEEEEEEEDEEE 32
G + E E K +E+E E E E EEE
Sbjct: 23 GHESSKIEAAESSKVDEDEVVSECEGEGEEE 53
Score = 24.2 bits (53), Expect = 8.9
Identities = 11/30 (36%), Positives = 15/30 (50%)
Query: 10 KEEEEKEEEEEEEEEEEEEDEEEEEEDEEE 39
E + E E + +E+E E E E EEE
Sbjct: 24 HESSKIEAAESSKVDEDEVVSECEGEGEEE 53
>gnl|CDD|234801 PRK00591, prfA, peptide chain release factor 1; Validated.
Length = 359
Score = 25.8 bits (58), Expect = 6.3
Identities = 19/40 (47%), Positives = 25/40 (62%)
Query: 14 EKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEE 53
+++ EE +E EEE D E E +EE +E EE EE EEE
Sbjct: 58 QEDLEEAKEMLEEESDPEMREMAKEELKELEERLEELEEE 97
>gnl|CDD|227615 COG5296, COG5296, Transcription factor involved in TATA site
selection and in elongation by RNA polymerase II
[Transcription].
Length = 521
Score = 25.8 bits (56), Expect = 6.5
Identities = 15/58 (25%), Positives = 26/58 (44%)
Query: 1 MGKREEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEELQA 58
+ K E EE+ E+ E + ++ +E +E E+ EE EE E+ + A
Sbjct: 151 LKKTREREERLYSERHIELQRFKDYKELEESEQGLQEEYTPSYAEEAVEDISRTDDFA 208
>gnl|CDD|223403 COG0326, HtpG, Molecular chaperone, HSP90 family [Posttranslational
modification, protein turnover, chaperones].
Length = 623
Score = 25.7 bits (57), Expect = 6.5
Identities = 12/32 (37%), Positives = 19/32 (59%)
Query: 22 EEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEE 53
+ + E EEE+E D EEE++E + E +E
Sbjct: 482 GDLDLELLEEEDEADSEEEKKEFKPLLERVKE 513
>gnl|CDD|220149 pfam09234, DUF1963, Domain of unknown function (DUF1963). This
domain is found in a set of hypothetical bacterial
proteins. Its exact function has not, as yet, been
described.
Length = 221
Score = 25.8 bits (57), Expect = 6.7
Identities = 19/49 (38%), Positives = 25/49 (51%)
Query: 5 EEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEE 53
+ E E K E+ +E E+D E+E E E E EEE+EE EE
Sbjct: 92 FLKAPFEGELKLPFEKSDEPISEDDYSFEQEYESEILELEEEDEELIEE 140
>gnl|CDD|240341 PTZ00272, PTZ00272, heat shock protein 83 kDa (Hsp83); Provisional.
Length = 701
Score = 25.8 bits (56), Expect = 6.8
Identities = 16/57 (28%), Positives = 38/57 (66%)
Query: 1 MGKREEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEELQ 57
M ++ E+E +E++E+ ++ +E+ EE EE +E +E ++++ ++ +E +E E+Q
Sbjct: 206 MVEKTTEKEVTDEDEEDTKKADEDGEEPKVEEVKEGDEGKKKKTKKVKEVTKEYEVQ 262
>gnl|CDD|235795 PRK06402, rpl12p, 50S ribosomal protein L12P; Reviewed.
Length = 106
Score = 24.9 bits (55), Expect = 6.8
Identities = 17/30 (56%), Positives = 20/30 (66%)
Query: 30 EEEEEEDEEEEEEEEEEEEEEEEEEELQAG 59
EE++EEEEEEEE+EE EEE AG
Sbjct: 71 AAAAAAAEEKKEEEEEEEEKEESEEEAAAG 100
>gnl|CDD|116948 pfam08367, M16C_assoc, Peptidase M16C associated. This domain
appears in eukaryotes as well as bacteria and tends to
be found near the C-terminus of the metalloprotease
M16C (pfam05193).
Length = 248
Score = 25.7 bits (57), Expect = 7.1
Identities = 16/46 (34%), Positives = 24/46 (52%)
Query: 10 KEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEE 55
E E++ EEE E+ E++ EED+E+ E E EE + E
Sbjct: 4 DETLEEKLNEEEREKLEKKKSSLSEEDKEKIIERGLELEELQSTPE 49
>gnl|CDD|224273 COG1354, scpA, Rec8/ScpA/Scc1-like protein (kleisin family)
[Replication, recombination, and repair].
Length = 248
Score = 25.7 bits (57), Expect = 7.1
Identities = 20/44 (45%), Positives = 24/44 (54%)
Query: 15 KEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEELQA 58
KEEEE E+EE EE +E EE E +E E E EEE +
Sbjct: 77 KEEEEAEDEELEEPRDELVARLEEYERYKEAAELLAELEEERRD 120
>gnl|CDD|236134 PRK07940, PRK07940, DNA polymerase III subunit delta'; Validated.
Length = 394
Score = 25.6 bits (57), Expect = 7.2
Identities = 11/29 (37%), Positives = 14/29 (48%)
Query: 34 EEDEEEEEEEEEEEEEEEEEEELQAGGHG 62
E + + E +E E EE L AGG G
Sbjct: 251 EAEAKALTAERDEAETEELRTALGAGGTG 279
>gnl|CDD|215366 PLN02681, PLN02681, proline dehydrogenase.
Length = 455
Score = 25.8 bits (57), Expect = 7.2
Identities = 12/53 (22%), Positives = 19/53 (35%), Gaps = 7/53 (13%)
Query: 43 EEEEEEEEEEEEELQAGGHGIAICQ-CKSAKIVTTKTIPMQVDGEACRVNPSI 94
E E EEE A +C+ +P+ +D E + P+I
Sbjct: 203 EPEPLTAEEERLLELAHERLQKLCERAAQLG------VPLLIDAEYTSLQPAI 249
>gnl|CDD|236842 PRK11091, PRK11091, aerobic respiration control sensor protein
ArcB; Provisional.
Length = 779
Score = 25.7 bits (57), Expect = 7.2
Identities = 13/33 (39%), Positives = 20/33 (60%)
Query: 6 EEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEE 38
E EK EE ++E E+ + E +E EE + E E+
Sbjct: 120 AEREKAEEARQEAFEQLKNEIKEREETQIELEQ 152
>gnl|CDD|223052 PHA03346, PHA03346, US22 family homolog; Provisional.
Length = 520
Score = 25.9 bits (57), Expect = 7.3
Identities = 9/51 (17%), Positives = 27/51 (52%)
Query: 9 EKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEELQAG 59
+++E ++E++++ E+ D +E++ + ++ +E E E + G
Sbjct: 426 PDDDDEGDDEDDDDWEDLGFDLDEDDVYDLKDVDEWRLERRIATAERWELG 476
>gnl|CDD|223003 PHA03169, PHA03169, hypothetical protein; Provisional.
Length = 413
Score = 25.7 bits (56), Expect = 7.5
Identities = 6/50 (12%), Positives = 10/50 (20%)
Query: 6 EEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEE 55
E E E ++ + E+ EE
Sbjct: 128 PESPASHSPPPSPPSHPGPHEPAPPESHNPSPNQQPSSFLQPSHEDSPEE 177
Score = 25.3 bits (55), Expect = 9.7
Identities = 9/61 (14%), Positives = 15/61 (24%)
Query: 2 GKREEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEELQAGGH 61
E E +++ + E+ EE E E E + G
Sbjct: 133 SHSPPPSPPSHPGPHEPAPPESHNPSPNQQPSSFLQPSHEDSPEEPEPPTSEPEPDSPGP 192
Query: 62 G 62
Sbjct: 193 P 193
>gnl|CDD|237178 PRK12705, PRK12705, hypothetical protein; Provisional.
Length = 508
Score = 25.4 bits (56), Expect = 7.6
Identities = 15/56 (26%), Positives = 26/56 (46%)
Query: 3 KREEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEELQA 58
++EE+ + E+ + E + EE E+ E E EE E++ + E QA
Sbjct: 88 QKEEQLDARAEKLDNLENQLEEREKALSARELELEELEKQLDNELYRVAGLTPEQA 143
>gnl|CDD|206733 cd04170, EF-G_bact, Elongation factor G (EF-G) family.
Translocation is mediated by EF-G (also called
translocase). The structure of EF-G closely resembles
that of the complex between EF-Tu and tRNA. This is an
example of molecular mimicry; a protein domain evolved
so that it mimics the shape of a tRNA molecule. EF-G in
the GTP form binds to the ribosome, primarily through
the interaction of its EF-Tu-like domain with the 50S
subunit. The binding of EF-G to the ribosome in this
manner stimulates the GTPase activity of EF-G. On GTP
hydrolysis, EF-G undergoes a conformational change that
forces its arm deeper into the A site on the 30S
subunit. To accommodate this domain, the peptidyl-tRNA
in the A site moves to the P site, carrying the mRNA and
the deacylated tRNA with it. The ribosome may be
prepared for these rearrangements by the initial binding
of EF-G as well. The dissociation of EF-G leaves the
ribosome ready to accept the next aminoacyl-tRNA into
the A site. This group contains only bacterial members.
Length = 268
Score = 25.6 bits (57), Expect = 7.7
Identities = 22/55 (40%), Positives = 29/55 (52%), Gaps = 2/55 (3%)
Query: 7 EEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEE--EEEEEEEEELQAG 59
+ + E E EE +E+ E EE E E +EE E+ EE E EEEL+AG
Sbjct: 176 DPGEPSVEIEIPEELKEKVAEAREELLEAVAETDEELMEKYLEEGELTEEELRAG 230
>gnl|CDD|217286 pfam02919, Topoisom_I_N, Eukaryotic DNA topoisomerase I, DNA
binding fragment. Topoisomerase I promotes the
relaxation of DNA superhelical tension by introducing a
transient single-stranded break in duplex DNA and are
vital for the processes of replication, transcription,
and recombination. This family may be more than one
structural domain.
Length = 215
Score = 25.2 bits (56), Expect = 7.7
Identities = 8/26 (30%), Positives = 19/26 (73%)
Query: 3 KREEEEEKEEEEKEEEEEEEEEEEEE 28
++E+++ +EEK+ +EE+++ EE
Sbjct: 98 EKEKKKAMSKEEKKAIKEEKDKLEEP 123
>gnl|CDD|223294 COG0216, PrfA, Protein chain release factor A [Translation,
ribosomal structure and biogenesis].
Length = 363
Score = 25.6 bits (57), Expect = 7.8
Identities = 17/48 (35%), Positives = 31/48 (64%)
Query: 10 KEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEELQ 57
+E ++ +E+ E+ +E E+++ E + EEE +E E + EE EEEL+
Sbjct: 53 REYKKAQEDLEDAKEMLAEEKDPEMREMAEEEIKELEAKIEELEEELK 100
>gnl|CDD|236136 PRK07946, PRK07946, putative monovalent cation/H+ antiporter
subunit C; Reviewed.
Length = 163
Score = 25.4 bits (56), Expect = 7.8
Identities = 9/45 (20%), Positives = 18/45 (40%)
Query: 2 GKREEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEE 46
+R + ++ ++ E + E D EE E EE ++
Sbjct: 119 RRRGLASAAPDHDRSDDPETGRQTAEGDAFGPEEFERPLEEAKDL 163
>gnl|CDD|240282 PTZ00126, PTZ00126, tyrosyl-tRNA synthetase; Provisional.
Length = 383
Score = 25.4 bits (56), Expect = 7.9
Identities = 13/59 (22%), Positives = 17/59 (28%), Gaps = 3/59 (5%)
Query: 3 KREEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEE---EEELQA 58
EE K + EE E + EE + EE EEL+
Sbjct: 1 TNPGEEFKSGSCSIKVGLREELETGFRGSPPQSKLSLEERVKLCLSIGEECIQPEELRE 59
>gnl|CDD|221173 pfam11702, DUF3295, Protein of unknown function (DUF3295). This
family is conserved in fungi but the function is not
known.
Length = 509
Score = 25.7 bits (56), Expect = 8.0
Identities = 12/51 (23%), Positives = 27/51 (52%)
Query: 7 EEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEELQ 57
E +++E E EE++ +E E+++++ + E+ EE +E+ Q
Sbjct: 281 ERTSDDDEDAIETEEDDVDESAIEDDDDDSDWEDSVEESGRSSVDEKTMFQ 331
Score = 25.3 bits (55), Expect = 9.8
Identities = 12/39 (30%), Positives = 23/39 (58%)
Query: 10 KEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEE 48
E ++E+ E EE++ DE E+D+++ + E+ EE
Sbjct: 280 PERTSDDDEDAIETEEDDVDESAIEDDDDDSDWEDSVEE 318
>gnl|CDD|224739 COG1826, TatA, Sec-independent protein secretion pathway
components [Intracellular trafficking and secretion].
Length = 94
Score = 24.7 bits (54), Expect = 8.0
Identities = 12/52 (23%), Positives = 31/52 (59%)
Query: 3 KREEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEE 54
K+ + K E ++E + EE +++++E E + +EE ++ E +E+ +++
Sbjct: 40 KKAASDVKNELDEELKLEELDDKKKELTAELQATKEELDQLASELKEDLKKK 91
>gnl|CDD|237869 PRK14962, PRK14962, DNA polymerase III subunits gamma and tau;
Provisional.
Length = 472
Score = 25.5 bits (56), Expect = 8.0
Identities = 15/60 (25%), Positives = 33/60 (55%)
Query: 1 MGKREEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEELQAGG 60
+ +E + +E+ + +++E+ +EE + EE++E+ E E+ +E EEL+ G
Sbjct: 331 ATRFSSPNVQENDVEEKNDNSNVQQKEKKKEESKAKEEKQEDIEFEKRFKELMEELKEKG 390
>gnl|CDD|184899 PRK14906, PRK14906, DNA-directed RNA polymerase subunit beta'/alpha
domain fusion protein; Provisional.
Length = 1460
Score = 25.6 bits (56), Expect = 8.1
Identities = 11/51 (21%), Positives = 20/51 (39%)
Query: 4 REEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEE 54
R E + E++E ++ D+E +E E + EE E +
Sbjct: 170 RLIEATRRLSVDYVPEDDEFVDDIGDDERLTAEEVRAEVADIYEEYNERKA 220
Score = 25.6 bits (56), Expect = 8.2
Identities = 13/54 (24%), Positives = 23/54 (42%)
Query: 5 EEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEELQA 58
E + E + + E++E D+ ++E EE E + EE E +A
Sbjct: 167 ERDRLIEATRRLSVDYVPEDDEFVDDIGDDERLTAEEVRAEVADIYEEYNERKA 220
>gnl|CDD|237035 PRK12280, rplW, 50S ribosomal protein L23; Reviewed.
Length = 158
Score = 25.1 bits (55), Expect = 8.2
Identities = 12/35 (34%), Positives = 26/35 (74%)
Query: 22 EEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEEL 56
EE E+E +E +E EE+E + ++E++E++E+++
Sbjct: 92 PEESEKEQKEVSKETEEKEAIKAKKEKKEKKEKKV 126
>gnl|CDD|215252 PLN02458, PLN02458, transferase, transferring glycosyl groups.
Length = 346
Score = 25.6 bits (56), Expect = 8.2
Identities = 9/33 (27%), Positives = 12/33 (36%)
Query: 33 EEEDEEEEEEEEEEEEEEEEEEELQAGGHGIAI 65
E E E+EEEE +L I +
Sbjct: 85 PAPARSAESETASLLEKEEEEPKLAPRRLVIIV 117
>gnl|CDD|234017 TIGR02794, tolA_full, TolA protein. TolA couples the inner
membrane complex of itself with TolQ and TolR to the
outer membrane complex of TolB and OprL (also called
Pal). Most of the length of the protein consists of
low-complexity sequence that may differ in both length
and composition from one species to another,
complicating efforts to discriminate TolA (the most
divergent gene in the tol-pal system) from paralogs such
as TonB. Selection of members of the seed alignment and
criteria for setting scoring cutoffs are based largely
conserved operon struction. //The Tol-Pal complex is
required for maintaining outer membrane integrity. Also
involved in transport (uptake) of colicins and
filamentous DNA, and implicated in pathogenesis.
Transport is energized by the proton motive force. TolA
is an inner membrane protein that interacts with
periplasmic TolB and with outer membrane porins ompC,
phoE and lamB [Transport and binding proteins, Other,
Cellular processes, Pathogenesis].
Length = 346
Score = 25.6 bits (56), Expect = 8.4
Identities = 16/55 (29%), Positives = 34/55 (61%)
Query: 3 KREEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEELQ 57
K+E+E +K+ E++ EE E++ E+ ++E E+ E+ ++ E+ ++ EE Q
Sbjct: 64 KKEQERQKKLEQQAEEAEKQRAAEQARQKELEQRAAAEKAAKQAEQAAKQAEEKQ 118
>gnl|CDD|240415 PTZ00429, PTZ00429, beta-adaptin; Provisional.
Length = 746
Score = 25.7 bits (56), Expect = 8.5
Identities = 7/24 (29%), Positives = 12/24 (50%)
Query: 36 DEEEEEEEEEEEEEEEEEEELQAG 59
D E +EE+ E+++ E G
Sbjct: 605 DVELDEEDTEDDDAVELPSTPSMG 628
>gnl|CDD|219240 pfam06957, COPI_C, Coatomer (COPI) alpha subunit C-terminus.
This family represents the C-terminus (approximately
500 residues) of the eukaryotic coatomer alpha subunit.
Coatomer (COPI) is a large cytosolic protein complex
which forms a coat around vesicles budding from the
Golgi apparatus. Such coatomer-coated vesicles have
been proposed to play a role in many distinct steps of
intracellular transport. Note that many family members
also contain the pfam04053 domain.
Length = 421
Score = 25.6 bits (56), Expect = 8.6
Identities = 10/43 (23%), Positives = 20/43 (46%)
Query: 11 EEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEE 53
+ ++ E+ + DE+ E E+ ++EE E +EE
Sbjct: 32 DFAVMGGDDWGEDADLGLDEDGYLEGEDGLLDDEEGPEGGDEE 74
>gnl|CDD|140276 PTZ00249, PTZ00249, variable surface protein Vir28; Provisional.
Length = 516
Score = 25.4 bits (55), Expect = 8.7
Identities = 17/67 (25%), Positives = 30/67 (44%), Gaps = 8/67 (11%)
Query: 1 MGKREEEEEKEEEEKEE--------EEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEE 52
+G+ E E EE +E E E E E +E+++ + + E+EE+ +
Sbjct: 345 LGQSGPLESSESEETDEYAGPKGLPEPELELVELQEEDQRHGLKHDVDTFREDEEDTFLQ 404
Query: 53 EEELQAG 59
E + AG
Sbjct: 405 EGDQPAG 411
>gnl|CDD|213395 cd12152, F1-ATPase_delta, mitochondrial ATP synthase delta subunit.
The F-ATPase is found in bacterial plasma membranes,
mitochondrial inner membranes and in chloroplast
thylakoid membranes. It has also been found in the
archaea Methanosarcina barkeri. It uses a proton
gradient to drive ATP synthesis and hydrolyzes ATP to
build the proton gradient. The extrinisic membrane
domain, F1, is composed of alpha, beta, gamma, delta,
and epsilon subunits with a stoichiometry of 3:3:1:1:1.
Alpha and beta subunit form the globular catalytic
moiety, a hexameric ring of alternating subunits. Gamma,
delta and epsilon subunits form a stalk, connecting F1
to F0, the integral membrane proton translocating
domain. In bacteria, which is lacking a eukaryotic
epsilon subunit homolog, this subunit is called the
epsilon subunit.
Length = 123
Score = 24.8 bits (55), Expect = 9.0
Identities = 13/39 (33%), Positives = 20/39 (51%)
Query: 20 EEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEELQA 58
+E E E+ D E EE E EE + ++E E+ +A
Sbjct: 78 DEAERPEDIDVERAEEALERAEERLAQAKDEREKARAEA 116
>gnl|CDD|217952 pfam04189, Gcd10p, Gcd10p family. eIF-3 is a multi-subunit complex
that stimulates translation initiation in vitro at
several different steps. This family corresponds to the
gamma subunit if eIF3. The Yeast protein Gcd10p has also
been shown to be part of a complex with the
methyltransferase Gcd14p that is involved in modifying
tRNA.
Length = 299
Score = 25.3 bits (56), Expect = 9.1
Identities = 11/28 (39%), Positives = 12/28 (42%)
Query: 28 EDEEEEEEDEEEEEEEEEEEEEEEEEEE 55
E EE EEEE E EEE +
Sbjct: 272 YFEPPAEEIEEEEPEVLPEEELNTMKPS 299
>gnl|CDD|217502 pfam03343, SART-1, SART-1 family. SART-1 is a protein involved in
cell cycle arrest and pre-mRNA splicing. It has been
shown to be a component of U4/U6 x U5 tri-snRNP complex
in human, Schizosaccharomyces pombe and Saccharomyces
cerevisiae. SART-1 is a known tumour antigen in a range
of cancers recognised by T cells.
Length = 603
Score = 25.5 bits (56), Expect = 9.3
Identities = 20/57 (35%), Positives = 35/57 (61%)
Query: 2 GKREEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEELQA 58
K EE+ E +++ EE + EE++EDEE+E+ D + E + +EE+EEE++
Sbjct: 404 QKEPLEEKPENKDESVEEISDAEEDDEDEEDEDGDGDVEMSAVDNDEEKEEEDKEAI 460
>gnl|CDD|227509 COG5182, CUS1, Splicing factor 3b, subunit 2 [RNA processing and
modification].
Length = 429
Score = 25.3 bits (55), Expect = 9.4
Identities = 12/48 (25%), Positives = 19/48 (39%)
Query: 6 EEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEE 53
E + E EE +EE+ E+E+ EE ++ E E
Sbjct: 356 ELLQFEAEEIYNDEEQYTRPVYENEDFEERVDDVSNGGLAEFAPAAVE 403
>gnl|CDD|236836 PRK11072, PRK11072, bifunctional glutamine-synthetase
adenylyltransferase/deadenyltransferase; Reviewed.
Length = 943
Score = 25.6 bits (57), Expect = 9.4
Identities = 11/36 (30%), Positives = 19/36 (52%)
Query: 25 EEEEDEEEEEEDEEEEEEEEEEEEEEEEEEELQAGG 60
++EE+ EEE E+ E ++ +EE+ L G
Sbjct: 438 DDEEETEEEAASEQWRELWQDALDEEDATPLLAELG 473
>gnl|CDD|218747 pfam05786, Cnd2, Condensin complex subunit 2. This family consists
of several Barren protein homologues from several
eukaryotic organisms. In Drosophila Barren (barr) is
required for sister-chromatid segregation in mitosis.
barr encodes a novel protein that is present in
proliferating cells and has homologues in yeast and
human. Mitotic defects in barr embryos become apparent
during cycle 16, resulting in a loss of PNS and CNS
neurons. Centromeres move apart at the
metaphase-anaphase transition and Cyclin B is degraded,
but sister chromatids remain connected, resulting in
chromatin bridging. Barren protein localises to
chromatin throughout mitosis. Colocalisation and
biochemical experiments indicate that Barren associates
with Topoisomerase II throughout mitosis and alters the
activity of Topoisomerase II. It has been suggested that
this association is required for proper chromosomal
segregation by facilitating the decatenation of
chromatids at anaphase. This family forms one of the
three non-structural maintenance of chromosomes (SMC)
subunits of the mitotic condensation complex along with
Cnd1 and Cnd3.
Length = 719
Score = 25.5 bits (56), Expect = 9.6
Identities = 11/30 (36%), Positives = 17/30 (56%)
Query: 22 EEEEEEEDEEEEEEDEEEEEEEEEEEEEEE 51
E E+D +E+ ED + + EE E E+E
Sbjct: 344 INAEVEDDPDEDAEDGGDGGDAEEFEAEKE 373
>gnl|CDD|213756 TIGR02985, Sig70_bacteroi1, RNA polymerase sigma-70 factor,
Bacteroides expansion family 1. This group of sigma
factors are members of the sigma-70 family (TIGR02937)
and are found primarily in the genus Bacteroides. This
family appears to have resulted from a lineage-specific
expansion as B. thetaiotaomicron VPI-5482, Bacteroides
forsythus ATCC 43037, Bacteroides fragilis YCH46 and
Bacteroides fragilis NCTC 9343 contain 25, 12, 24 and 23
members, respectively. There are currentlyonly two known
members of this family outside of the Bacteroides, in
Rhodopseudomonas and Bradyrhizobium.
Length = 161
Score = 24.8 bits (55), Expect = 9.6
Identities = 20/44 (45%), Positives = 27/44 (61%)
Query: 13 EEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEEL 56
++ EE+ +EE E EE E E + EEE E +E EE EE E+L
Sbjct: 71 KQVEEKYQEELAEIEERELSEADPEEELEAKELEEIIEEAIEKL 114
>gnl|CDD|223957 COG1026, COG1026, Predicted Zn-dependent peptidases,
insulinase-like [General function prediction only].
Length = 978
Score = 25.4 bits (56), Expect = 9.7
Identities = 13/46 (28%), Positives = 29/46 (63%)
Query: 11 EEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEEL 56
E+ EKEE E ++ E +E+ E+ ++ ++ +E +++ + EE+L
Sbjct: 463 EKLEKEERELLQKRSSELTDEDLEKIIKDSKKLKERQDQPDSEEDL 508
>gnl|CDD|225281 COG2425, COG2425, Uncharacterized protein containing a von
Willebrand factor type A (vWA) domain [General function
prediction only].
Length = 437
Score = 25.4 bits (56), Expect = 9.9
Identities = 16/44 (36%), Positives = 20/44 (45%)
Query: 16 EEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEELQAG 59
+ E E+ E E E E +EE E E EE EEL +G
Sbjct: 119 LQREGSEDFLEGEREGLLSEKQEEISLSGEMEGILEEVEELISG 162
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.292 0.119 0.301
Gapped
Lambda K H
0.267 0.0812 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 6,572,956
Number of extensions: 688203
Number of successful extensions: 44133
Number of sequences better than 10.0: 1
Number of HSP's gapped: 19935
Number of HSP's successfully gapped: 9068
Length of query: 117
Length of database: 10,937,602
Length adjustment: 80
Effective length of query: 37
Effective length of database: 7,389,282
Effective search space: 273403434
Effective search space used: 273403434
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 17 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 44 (21.6 bits)
S2: 53 (24.0 bits)