RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy12045
         (117 letters)



>d2bona1 e.52.1.2 (A:5-299) Lipid kinase YegS {Escherichia coli
           [TaxId: 562]}
          Length = 295

 Score = 36.1 bits (82), Expect = 4e-04
 Identities = 7/37 (18%), Positives = 8/37 (21%)

Query: 59  GGHGIAICQCKSAKIVTTKTIPMQVDGEACRVNPSII 95
               I         I     I   +DGE        I
Sbjct: 240 DNPNIIEGASSWFDIQAPHDITFNLDGEPLSGQNFHI 276


>d2qv7a1 e.52.1.2 (A:1-312) Diacylglycerol kinase DgkB
           {Staphylococcus aureus [TaxId: 1280]}
          Length = 312

 Score = 33.4 bits (75), Expect = 0.003
 Identities = 8/35 (22%), Positives = 14/35 (40%), Gaps = 4/35 (11%)

Query: 56  LQAGGH----GIAICQCKSAKIVTTKTIPMQVDGE 86
              G H     +   + K+  I +   + + VDGE
Sbjct: 239 ASRGEHTKHPKVIYEKAKAINISSFTDLQLNVDGE 273


>d1bjta_ e.11.1.1 (A:) DNA topoisomerase II, C-terminal fragment
           (residues 410-1202) {Baker's yeast (Saccharomyces
           cerevisiae) [TaxId: 4932]}
          Length = 760

 Score = 29.8 bits (66), Expect = 0.075
 Identities = 10/52 (19%), Positives = 24/52 (46%)

Query: 4   REEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEE 55
            +E  +K  ++K+E+E E E   +   ++    + +  E   +E  + + E 
Sbjct: 707 TKERYQKLLKQKQEKETELENLLKLSAKDIWNTDLKAFEVGYQEFLQRDAEA 758



 Score = 29.0 bits (64), Expect = 0.13
 Identities = 11/51 (21%), Positives = 23/51 (45%)

Query: 2   GKREEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEE 52
            +R ++  K+++EKE E E   +   +D    +    E   +E  + + E 
Sbjct: 708 KERYQKLLKQKQEKETELENLLKLSAKDIWNTDLKAFEVGYQEFLQRDAEA 758



 Score = 25.9 bits (56), Expect = 1.3
 Identities = 9/53 (16%), Positives = 24/53 (45%), Gaps = 1/53 (1%)

Query: 7   EEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEE-EEEEEEEEEEEEELQA 58
           +E  ++  K+++E+E E E       ++    + +  E   +E  + + E + 
Sbjct: 708 KERYQKLLKQKQEKETELENLLKLSAKDIWNTDLKAFEVGYQEFLQRDAEARG 760


>d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal
           (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]}
          Length = 267

 Score = 28.7 bits (63), Expect = 0.14
 Identities = 16/49 (32%), Positives = 20/49 (40%)

Query: 5   EEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEE 53
             EE + E   EE E  +   +E  E   E DE   E+  E EE   E 
Sbjct: 178 NGEEREAEVPPEERERVQRFRQEVLEAIVETDEGLLEKYLEGEEVTGEA 226



 Score = 27.9 bits (61), Expect = 0.25
 Identities = 15/53 (28%), Positives = 21/53 (39%)

Query: 1   MGKREEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEE 53
             + E   E+ E  +   +E  E   E DE   E+  E EE   E  E+   E
Sbjct: 181 EREAEVPPEERERVQRFRQEVLEAIVETDEGLLEKYLEGEEVTGEALEKAFHE 233


>d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal
           (G) domain {Thermus thermophilus [TaxId: 274]}
          Length = 276

 Score = 28.5 bits (63), Expect = 0.18
 Identities = 12/48 (25%), Positives = 20/48 (41%)

Query: 6   EEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEE 53
            +  +    +E  ++  E  E+  E   + DE    +  E EE  EEE
Sbjct: 188 TDIREIPIPEEYLDQAREYHEKLVEVAADFDENIMLKYLEGEEPTEEE 235


>d2bg1a1 e.3.1.1 (A:337-789) Penicillin-binding protein 1b,
          transpeptidase domain {Streptococcus pneumoniae [TaxId:
          1313]}
          Length = 453

 Score = 27.3 bits (59), Expect = 0.41
 Identities = 11/68 (16%), Positives = 25/68 (36%), Gaps = 10/68 (14%)

Query: 15 KEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEELQAGGHGIAICQCKSAKIV 74
              E +E   +   + +    +E + E  ++   +   +E++ GG+          KI 
Sbjct: 6  TTLAEAQERMYDYLAQRDNVSAKELKNEATQKFYRDLAAKEIENGGY----------KIT 55

Query: 75 TTKTIPMQ 82
          TT    + 
Sbjct: 56 TTIDQKIH 63


>d1qkla_ a.143.1.2 (A:) RPB6 {Human (Homo sapiens) [TaxId: 9606]}
          Length = 127

 Score = 25.9 bits (57), Expect = 0.81
 Identities = 10/48 (20%), Positives = 26/48 (54%)

Query: 5  EEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEE 52
          + E+  + ++ ++ EE+E  ++ E+ EEE ++  E     E  +  ++
Sbjct: 3  DNEDNFDGDDFDDVEEDEGLDDLENAEEEGQENVEILPSGERPQANQK 50



 Score = 25.5 bits (56), Expect = 1.3
 Identities = 11/45 (24%), Positives = 23/45 (51%)

Query: 11 EEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEE 55
          + E+  + ++ ++ EE+E  ++ E  EEE +E  E     E  + 
Sbjct: 3  DNEDNFDGDDFDDVEEDEGLDDLENAEEEGQENVEILPSGERPQA 47



 Score = 25.2 bits (55), Expect = 1.7
 Identities = 14/40 (35%), Positives = 24/40 (60%)

Query: 20 EEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEELQAG 59
          + E+  + +D ++ EEDE  ++ E  EEE +E  E L +G
Sbjct: 3  DNEDNFDGDDFDDVEEDEGLDDLENAEEEGQENVEILPSG 42



 Score = 25.2 bits (55), Expect = 1.7
 Identities = 10/48 (20%), Positives = 23/48 (47%)

Query: 6  EEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEE 53
          + E+  + +  ++ EE+E  ++ +  EEE  E  E     E  +  ++
Sbjct: 3  DNEDNFDGDDFDDVEEDEGLDDLENAEEEGQENVEILPSGERPQANQK 50



 Score = 24.4 bits (53), Expect = 2.7
 Identities = 10/48 (20%), Positives = 25/48 (52%)

Query: 8  EEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEE 55
          + ++  + ++ ++ EE+E  +D E  EE+ +E  E     E  +  ++
Sbjct: 3  DNEDNFDGDDFDDVEEDEGLDDLENAEEEGQENVEILPSGERPQANQK 50



 Score = 24.4 bits (53), Expect = 3.4
 Identities = 11/50 (22%), Positives = 24/50 (48%)

Query: 1  MGKREEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEE 50
          M   E+  + ++ +  EE+E  ++ E  +EE +E  E     E  +  ++
Sbjct: 1  MSDNEDNFDGDDFDDVEEDEGLDDLENAEEEGQENVEILPSGERPQANQK 50



 Score = 24.4 bits (53), Expect = 3.5
 Identities = 11/48 (22%), Positives = 23/48 (47%)

Query: 7  EEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEE 54
          + E   +  + ++ EE+E  ++ E  EEE +E  E     E  +  ++
Sbjct: 3  DNEDNFDGDDFDDVEEDEGLDDLENAEEEGQENVEILPSGERPQANQK 50



 Score = 24.0 bits (52), Expect = 4.2
 Identities = 11/43 (25%), Positives = 23/43 (53%)

Query: 21 EEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEELQAGGHGI 63
          + E+  + D+ ++ E++E  ++ E  EEE +E  E+   G   
Sbjct: 3  DNEDNFDGDDFDDVEEDEGLDDLENAEEEGQENVEILPSGERP 45



 Score = 24.0 bits (52), Expect = 4.3
 Identities = 12/43 (27%), Positives = 23/43 (53%)

Query: 16 EEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEELQA 58
          E+  + ++ ++ E++E  ++ E  EEE +E  E     E  QA
Sbjct: 5  EDNFDGDDFDDVEEDEGLDDLENAEEEGQENVEILPSGERPQA 47


>d1ygpa_ c.87.1.4 (A:) Glycogen phosphorylase {Baker's yeast
           (Saccharomyces cerevisiae) [TaxId: 4932]}
          Length = 876

 Score = 26.5 bits (58), Expect = 0.83
 Identities = 13/56 (23%), Positives = 24/56 (42%), Gaps = 1/56 (1%)

Query: 17  EEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEELQAGGHGI-AICQCKSA 71
           E+ E+    + +  E  +   +E   + E+  ++E +  L  GG G  A C   S 
Sbjct: 119 EDPEDPAASKGKPREMIKGALDELGFKLEDVLDQEPDAGLGNGGLGRLAACFVDSM 174


>d2ayua1 d.305.1.1 (A:70-370) Nucleosome assembly protein, NAP
           {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
          Length = 301

 Score = 26.1 bits (57), Expect = 1.2
 Identities = 14/50 (28%), Positives = 26/50 (52%)

Query: 3   KREEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEE 52
           +R      +E+ K E+  + +E  E   E E   +EEE+ + + EEE+ +
Sbjct: 65  QRSRIISGQEQPKPEQIAKGQEIVESLNETELLVDEEEKAQNDSEEEQVK 114



 Score = 25.4 bits (55), Expect = 1.7
 Identities = 13/43 (30%), Positives = 25/43 (58%)

Query: 2   GKREEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEE 44
           G+ + + E+  + +E  E   E E   DEEE+ +++ EEE+ +
Sbjct: 72  GQEQPKPEQIAKGQEIVESLNETELLVDEEEKAQNDSEEEQVK 114



 Score = 25.4 bits (55), Expect = 2.3
 Identities = 12/40 (30%), Positives = 23/40 (57%)

Query: 15  KEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEE 54
           +E+ + E+  + +E  E   E E   +EEE+ + + EEE+
Sbjct: 73  QEQPKPEQIAKGQEIVESLNETELLVDEEEKAQNDSEEEQ 112



 Score = 25.4 bits (55), Expect = 2.3
 Identities = 13/43 (30%), Positives = 23/43 (53%)

Query: 17  EEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEELQAG 59
           +E+ + E+  +  E  E  +E E   +EEE+ + + EEE   G
Sbjct: 73  QEQPKPEQIAKGQEIVESLNETELLVDEEEKAQNDSEEEQVKG 115



 Score = 25.0 bits (54), Expect = 2.4
 Identities = 10/42 (23%), Positives = 24/42 (57%)

Query: 14  EKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEE 55
           +++ + E+  + +E  E   E +   +EEE+ + + EEE+ +
Sbjct: 73  QEQPKPEQIAKGQEIVESLNETELLVDEEEKAQNDSEEEQVK 114



 Score = 25.0 bits (54), Expect = 2.7
 Identities = 12/42 (28%), Positives = 24/42 (57%)

Query: 12  EEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEE 53
           +E+ + E+  + +E  E   E E   +EEE+ + + EEE+ +
Sbjct: 73  QEQPKPEQIAKGQEIVESLNETELLVDEEEKAQNDSEEEQVK 114



 Score = 25.0 bits (54), Expect = 2.8
 Identities = 10/42 (23%), Positives = 25/42 (59%)

Query: 16  EEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEELQ 57
           +E+ + E+  + ++  E   + E   +EEE+ + + EEE+++
Sbjct: 73  QEQPKPEQIAKGQEIVESLNETELLVDEEEKAQNDSEEEQVK 114



 Score = 24.6 bits (53), Expect = 3.2
 Identities = 13/44 (29%), Positives = 23/44 (52%)

Query: 18  EEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEELQAGGH 61
           +E+ + E+  + +E  E   E E   +EEE+ + + EE Q  G 
Sbjct: 73  QEQPKPEQIAKGQEIVESLNETELLVDEEEKAQNDSEEEQVKGI 116



 Score = 24.2 bits (52), Expect = 4.6
 Identities = 10/44 (22%), Positives = 22/44 (50%)

Query: 20  EEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEELQAGGHGI 63
           +E+ + E+  + +E  +   E E   +EEE+ + +  +    GI
Sbjct: 73  QEQPKPEQIAKGQEIVESLNETELLVDEEEKAQNDSEEEQVKGI 116



 Score = 23.8 bits (51), Expect = 6.5
 Identities = 10/41 (24%), Positives = 22/41 (53%)

Query: 17  EEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEELQ 57
           + E+  + +E  +   E E   +EEE+ + + EEE+ + + 
Sbjct: 77  KPEQIAKGQEIVESLNETELLVDEEEKAQNDSEEEQVKGIP 117


>d1siga_ a.177.1.1 (A:) Sigma70 {Escherichia coli [TaxId: 562]}
          Length = 334

 Score = 26.0 bits (56), Expect = 1.4
 Identities = 12/51 (23%), Positives = 26/51 (50%)

Query: 5   EEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEE 55
             EE+          E  +E+ ++DE+E+EED +++  +++   + E   E
Sbjct: 57  NAEEDLAPTATHVGSELSQEDLDDDEDEDEEDGDDDSADDDNSIDPELARE 107



 Score = 25.2 bits (54), Expect = 2.3
 Identities = 8/46 (17%), Positives = 24/46 (52%)

Query: 6  EEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEE 51
           +   EE+          E  +ED +++E+++EE+ +++  +++  
Sbjct: 54 VDPNAEEDLAPTATHVGSELSQEDLDDDEDEDEEDGDDDSADDDNS 99



 Score = 25.2 bits (54), Expect = 2.3
 Identities = 8/46 (17%), Positives = 24/46 (52%)

Query: 7  EEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEE 52
           +   EE+          E  +++ +++EDE+EE+ +++  +++  
Sbjct: 54 VDPNAEEDLAPTATHVGSELSQEDLDDDEDEDEEDGDDDSADDDNS 99



 Score = 25.2 bits (54), Expect = 2.5
 Identities = 8/44 (18%), Positives = 22/44 (50%)

Query: 5  EEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEE 48
             EE           E  +E+ +D+E+E+E++ +++  +++  
Sbjct: 56 PNAEEDLAPTATHVGSELSQEDLDDDEDEDEEDGDDDSADDDNS 99



 Score = 24.5 bits (52), Expect = 3.8
 Identities = 8/45 (17%), Positives = 24/45 (53%)

Query: 11 EEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEE 55
           +   EE+          +  +E+ D++E+E+EE+ +++  +++ 
Sbjct: 54 VDPNAEEDLAPTATHVGSELSQEDLDDDEDEDEEDGDDDSADDDN 98



 Score = 24.5 bits (52), Expect = 4.6
 Identities = 7/53 (13%), Positives = 22/53 (41%)

Query: 16  EEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEELQAGGHGIAICQC 68
              EE+          E  +++ +++E+E+EE+ +++  +           + 
Sbjct: 56  PNAEEDLAPTATHVGSELSQEDLDDDEDEDEEDGDDDSADDDNSIDPELAREK 108


>d1sdma_ c.37.1.9 (A:) Kinesin heavy chain-like protein {Potato
           (Solanum tuberosum) [TaxId: 4113]}
          Length = 364

 Score = 25.7 bits (55), Expect = 1.5
 Identities = 10/37 (27%), Positives = 18/37 (48%)

Query: 3   KREEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEE 39
           K    +E    +K     +E+   + D+EE EE ++E
Sbjct: 328 KNVSSKEVARLKKLVSYWKEQAGRKGDDEELEEIQDE 364



 Score = 24.6 bits (52), Expect = 3.7
 Identities = 7/36 (19%), Positives = 17/36 (47%)

Query: 15  KEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEE 50
               +E    ++     +E+   + ++EE EE ++E
Sbjct: 329 NVSSKEVARLKKLVSYWKEQAGRKGDDEELEEIQDE 364



 Score = 24.6 bits (52), Expect = 4.3
 Identities = 9/37 (24%), Positives = 18/37 (48%)

Query: 10  KEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEE 46
           K    KE    ++     +++   + D+EE EE ++E
Sbjct: 328 KNVSSKEVARLKKLVSYWKEQAGRKGDDEELEEIQDE 364



 Score = 24.2 bits (51), Expect = 5.2
 Identities = 7/35 (20%), Positives = 17/35 (48%)

Query: 21  EEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEE 55
              +E    ++     +E+   + ++EE EE ++E
Sbjct: 330 VSSKEVARLKKLVSYWKEQAGRKGDDEELEEIQDE 364



 Score = 23.8 bits (50), Expect = 7.1
 Identities = 7/35 (20%), Positives = 16/35 (45%)

Query: 7   EEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEE 41
              KE    ++     +E+     ++EE +E ++E
Sbjct: 330 VSSKEVARLKKLVSYWKEQAGRKGDDEELEEIQDE 364



 Score = 23.8 bits (50), Expect = 7.7
 Identities = 8/37 (21%), Positives = 18/37 (48%)

Query: 15  KEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEE 51
           K    +E    ++     +E+   + ++EE EE ++E
Sbjct: 328 KNVSSKEVARLKKLVSYWKEQAGRKGDDEELEEIQDE 364


>d1oisa_ e.15.1.1 (A:) Eukaryotic DNA topoisomerase I, N-terminal
           DNA-binding fragment {Baker's yeast (Saccharomyces
           cerevisiae) [TaxId: 4932]}
          Length = 223

 Score = 25.1 bits (55), Expect = 2.1
 Identities = 7/26 (26%), Positives = 18/26 (69%)

Query: 3   KREEEEEKEEEEKEEEEEEEEEEEEE 28
           ++E++++   +EK++   E E+ EE+
Sbjct: 104 QKEQKKQLTSQEKKQIRLEREKFEED 129



 Score = 23.9 bits (52), Expect = 5.9
 Identities = 6/27 (22%), Positives = 18/27 (66%)

Query: 5   EEEEEKEEEEKEEEEEEEEEEEEEDEE 31
            ++E+K++   +E+++   E E+ +E+
Sbjct: 103 LQKEQKKQLTSQEKKQIRLEREKFEED 129



 Score = 23.5 bits (51), Expect = 8.1
 Identities = 6/28 (21%), Positives = 19/28 (67%)

Query: 7   EEEKEEEEKEEEEEEEEEEEEEDEEEEE 34
           + +KE++++   +E+++   E ++ EE+
Sbjct: 102 QLQKEQKKQLTSQEKKQIRLEREKFEED 129



 Score = 23.1 bits (50), Expect = 9.3
 Identities = 7/28 (25%), Positives = 19/28 (67%)

Query: 8   EEKEEEEKEEEEEEEEEEEEEDEEEEEE 35
           + ++E++K+   +E+++   E E+ EE+
Sbjct: 102 QLQKEQKKQLTSQEKKQIRLEREKFEED 129


>d1qs0a_ c.36.1.11 (A:) 2-oxoisovalerate dehydrogenase (E1B), PP
           module {Pseudomonas putida [TaxId: 303]}
          Length = 407

 Score = 25.2 bits (54), Expect = 2.4
 Identities = 6/39 (15%), Positives = 11/39 (28%)

Query: 18  EEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEEL 56
           EEE +    E +       +E E+              +
Sbjct: 350 EEEHQATTAEFEAAVIAAQKEAEQYGTLANGHIPSAASM 388


>d2ncda_ c.37.1.9 (A:) Kinesin motor Ncd (non-claret
          disjunctional) {Fruit fly (Drosophila melanogaster)
          [TaxId: 7227]}
          Length = 368

 Score = 25.3 bits (54), Expect = 2.4
 Identities = 7/31 (22%), Positives = 13/31 (41%)

Query: 12 EEEKEEEEEEEEEEEEEDEEEEEEDEEEEEE 42
           +  EE     E++  E E  +E+  +   E
Sbjct: 2  RQRTEELLRCNEQQAAELETCKEQLFQSNME 32



 Score = 24.1 bits (51), Expect = 5.3
 Identities = 6/31 (19%), Positives = 14/31 (45%)

Query: 7  EEEKEEEEKEEEEEEEEEEEEEDEEEEEEDE 37
           +  EE  +  E++  E E  +++  +   E
Sbjct: 2  RQRTEELLRCNEQQAAELETCKEQLFQSNME 32



 Score = 24.1 bits (51), Expect = 6.5
 Identities = 7/31 (22%), Positives = 14/31 (45%)

Query: 4  REEEEEKEEEEKEEEEEEEEEEEEEDEEEEE 34
          R+  EE     +++  E E  +E+  +   E
Sbjct: 2  RQRTEELLRCNEQQAAELETCKEQLFQSNME 32


>d2fgea3 d.185.1.1 (A:272-539) Presequence protease 1, PREP1 {Thale
           cress (Arabidopsis thaliana) [TaxId: 3702]}
          Length = 268

 Score = 24.6 bits (53), Expect = 3.2
 Identities = 14/51 (27%), Positives = 25/51 (49%)

Query: 6   EEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEEL 56
           + E+  +EE EE+   E+ +    EE+  E     EE + ++E  +  E L
Sbjct: 213 DPEKATQEEVEEKNILEKVKAAMTEEDLAELARATEELKLKQETPDPPEAL 263



 Score = 23.4 bits (50), Expect = 7.8
 Identities = 14/47 (29%), Positives = 23/47 (48%)

Query: 5   EEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEE 51
           E+  ++E EEK   E+ +    EED  E     EE + ++E  +  E
Sbjct: 215 EKATQEEVEEKNILEKVKAAMTEEDLAELARATEELKLKQETPDPPE 261


>d1k4ta3 e.15.1.1 (A:201-430) Eukaryotic DNA topoisomerase I,
           N-terminal DNA-binding fragment {Human (Homo sapiens)
           [TaxId: 9606]}
          Length = 230

 Score = 24.7 bits (54), Expect = 3.4
 Identities = 8/26 (30%), Positives = 16/26 (61%)

Query: 3   KREEEEEKEEEEKEEEEEEEEEEEEE 28
           + E  ++  +EEK + +EE E+  +E
Sbjct: 112 QTEARKQMSKEEKLKIKEENEKLLKE 137


>d1wp5a_ b.68.10.1 (A:) Topoisomerase IV subunit A, ParC, C-terminal
           domain {Bacillus stearothermophilus [TaxId: 1422]}
          Length = 323

 Score = 24.5 bits (52), Expect = 3.6
 Identities = 5/16 (31%), Positives = 7/16 (43%)

Query: 33  EEEDEEEEEEEEEEEE 48
           E ED+ E+     E  
Sbjct: 306 EAEDKTEKLAAALEHH 321



 Score = 24.2 bits (51), Expect = 5.1
 Identities = 5/16 (31%), Positives = 7/16 (43%)

Query: 26  EEEDEEEEEEDEEEEE 41
           E ED+ E+     E  
Sbjct: 306 EAEDKTEKLAAALEHH 321



 Score = 24.2 bits (51), Expect = 5.6
 Identities = 4/16 (25%), Positives = 7/16 (43%)

Query: 20  EEEEEEEEEDEEEEEE 35
           E E++ E+     E  
Sbjct: 306 EAEDKTEKLAAALEHH 321



 Score = 24.2 bits (51), Expect = 5.8
 Identities = 4/16 (25%), Positives = 7/16 (43%)

Query: 31  EEEEEDEEEEEEEEEE 46
           E E++ E+     E  
Sbjct: 306 EAEDKTEKLAAALEHH 321



 Score = 24.2 bits (51), Expect = 5.9
 Identities = 4/16 (25%), Positives = 7/16 (43%)

Query: 37  EEEEEEEEEEEEEEEE 52
           E E++ E+     E  
Sbjct: 306 EAEDKTEKLAAALEHH 321



 Score = 24.2 bits (51), Expect = 5.9
 Identities = 4/16 (25%), Positives = 7/16 (43%)

Query: 38  EEEEEEEEEEEEEEEE 53
           E E++ E+     E  
Sbjct: 306 EAEDKTEKLAAALEHH 321



 Score = 24.2 bits (51), Expect = 5.9
 Identities = 4/16 (25%), Positives = 7/16 (43%)

Query: 39  EEEEEEEEEEEEEEEE 54
           E E++ E+     E  
Sbjct: 306 EAEDKTEKLAAALEHH 321



 Score = 24.2 bits (51), Expect = 5.9
 Identities = 4/16 (25%), Positives = 7/16 (43%)

Query: 40  EEEEEEEEEEEEEEEE 55
           E E++ E+     E  
Sbjct: 306 EAEDKTEKLAAALEHH 321



 Score = 23.8 bits (50), Expect = 6.7
 Identities = 3/16 (18%), Positives = 7/16 (43%)

Query: 36  DEEEEEEEEEEEEEEE 51
           + E++ E+     E  
Sbjct: 306 EAEDKTEKLAAALEHH 321



 Score = 23.8 bits (50), Expect = 6.9
 Identities = 5/19 (26%), Positives = 8/19 (42%)

Query: 14  EKEEEEEEEEEEEEEDEEE 32
            K E E++ E+     E  
Sbjct: 303 WKVEAEDKTEKLAAALEHH 321



 Score = 23.8 bits (50), Expect = 7.2
 Identities = 4/16 (25%), Positives = 7/16 (43%)

Query: 24  EEEEEDEEEEEEDEEE 39
           E E++ E+     E  
Sbjct: 306 EAEDKTEKLAAALEHH 321



 Score = 23.8 bits (50), Expect = 7.3
 Identities = 3/16 (18%), Positives = 7/16 (43%)

Query: 27  EEDEEEEEEDEEEEEE 42
           E +++ E+     E  
Sbjct: 306 EAEDKTEKLAAALEHH 321



 Score = 23.8 bits (50), Expect = 7.7
 Identities = 3/16 (18%), Positives = 7/16 (43%)

Query: 34  EEDEEEEEEEEEEEEE 49
           E +++ E+     E  
Sbjct: 306 EAEDKTEKLAAALEHH 321



 Score = 23.8 bits (50), Expect = 8.2
 Identities = 4/16 (25%), Positives = 7/16 (43%)

Query: 19  EEEEEEEEEEDEEEEE 34
           E E++ E+     E  
Sbjct: 306 EAEDKTEKLAAALEHH 321



 Score = 23.4 bits (49), Expect = 8.4
 Identities = 4/16 (25%), Positives = 6/16 (37%)

Query: 32  EEEEDEEEEEEEEEEE 47
           E E+  E+     E  
Sbjct: 306 EAEDKTEKLAAALEHH 321



 Score = 23.4 bits (49), Expect = 8.7
 Identities = 4/16 (25%), Positives = 7/16 (43%)

Query: 18  EEEEEEEEEEEDEEEE 33
           E E++ E+     E  
Sbjct: 306 EAEDKTEKLAAALEHH 321



 Score = 23.4 bits (49), Expect = 9.2
 Identities = 4/16 (25%), Positives = 7/16 (43%)

Query: 35  EDEEEEEEEEEEEEEE 50
           E E++ E+     E  
Sbjct: 306 EAEDKTEKLAAALEHH 321


>d1rq0a_ e.38.1.1 (A:) Peptide chain release factor 1, RF1
          {Thermotoga maritima [TaxId: 2336]}
          Length = 333

 Score = 24.7 bits (53), Expect = 3.8
 Identities = 16/51 (31%), Positives = 25/51 (49%)

Query: 6  EEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEEL 56
          E  + EE E      +E +E  E   EE E+E E E+ E+E ++  +E   
Sbjct: 28 EYAKIEEIENITNRIKETQEFIELLREEGENELEIEKYEKELDQLYQELLF 78



 Score = 23.5 bits (50), Expect = 8.0
 Identities = 15/43 (34%), Positives = 21/43 (48%)

Query: 5  EEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEE 47
          EE E      KE +E  E   EE + E E E  E+E ++  +E
Sbjct: 33 EEIENITNRIKETQEFIELLREEGENELEIEKYEKELDQLYQE 75



 Score = 23.5 bits (50), Expect = 8.2
 Identities = 15/51 (29%), Positives = 24/51 (47%)

Query: 5  EEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEE 55
          E+ +    E  + EE E      ++ +E  E   EE E E E E+ E+E +
Sbjct: 20 EQMKNYGMEYAKIEEIENITNRIKETQEFIELLREEGENELEIEKYEKELD 70


>d2bfda1 c.36.1.11 (A:6-400) Branched-chain alpha-keto acid
           dehydrogenase, PP module {Human (Homo sapiens) [TaxId:
           9606]}
          Length = 395

 Score = 24.4 bits (52), Expect = 4.8
 Identities = 9/54 (16%), Positives = 22/54 (40%)

Query: 5   EEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEELQA 58
           EE+E+   ++   +  E  E+ E   +        +  +E   +  +++E L  
Sbjct: 326 EEQEKAWRKQSRRKVMEAFEQAERKPKPNPNLLFSDVYQEMPAQLRKQQESLAR 379


>d1w85a_ c.36.1.11 (A:) Pyruvate dehydrogenase E1-alpha, PdhA
           {Bacillus stearothermophilus [TaxId: 1422]}
          Length = 365

 Score = 24.0 bits (51), Expect = 5.3
 Identities = 14/54 (25%), Positives = 26/54 (48%)

Query: 5   EEEEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEELQA 58
           EEEE    E+ +EE +E  ++ +E  +++  D      EE     +E+ E  + 
Sbjct: 308 EEEENNVIEQAKEEIKEAIKKADETPKQKVTDLISIMFEELPFNLKEQYEIYKE 361


>d1ofcx3 a.187.1.1 (X:697-798) HAND domain of the nucleosome
          remodeling ATPase ISWI {Fruit fly (Drosophila
          melanogaster) [TaxId: 7227]}
          Length = 102

 Score = 23.6 bits (51), Expect = 5.6
 Identities = 10/41 (24%), Positives = 20/41 (48%)

Query: 8  EEKEEEEKEEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEE 48
           +  E   +  + + EE+ + DE E   +EE +E+E    +
Sbjct: 59 PKNTELGSDATKVQREEQRKIDEAEPLTEEEIQEKENLLSQ 99



 Score = 22.9 bits (49), Expect = 9.4
 Identities = 11/40 (27%), Positives = 20/40 (50%)

Query: 16 EEEEEEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEE 55
          +  E   +  + + EE+ + DE E   EEE +E+E    +
Sbjct: 60 KNTELGSDATKVQREEQRKIDEAEPLTEEEIQEKENLLSQ 99


>d1iruc_ d.153.1.4 (C:) Proteasome alpha subunit (non-catalytic)
           {Cow (Bos taurus) [TaxId: 9913]}
          Length = 250

 Score = 23.9 bits (51), Expect = 5.9
 Identities = 9/26 (34%), Positives = 17/26 (65%)

Query: 3   KREEEEEKEEEEKEEEEEEEEEEEEE 28
           +  +++E E+  K+ EEEE + E E+
Sbjct: 225 RVLKQKEVEQLIKKHEEEEAKAEREK 250


>d2oara1 f.16.1.1 (A:10-118) Gated mechanosensitive channel
           {Mycobacterium tuberculosis [TaxId: 1773]}
          Length = 109

 Score = 23.2 bits (50), Expect = 6.6
 Identities = 3/16 (18%), Positives = 8/16 (50%)

Query: 41  EEEEEEEEEEEEEEEL 56
            ++ E E+  + +  L
Sbjct: 89  RKKGEVEQPGDTQVVL 104


>d1zhxa1 d.338.1.1 (A:2-434) Oxysterol-binding protein homolog 4,
           KES1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId:
           4932]}
          Length = 433

 Score = 23.8 bits (51), Expect = 7.2
 Identities = 15/78 (19%), Positives = 26/78 (33%), Gaps = 9/78 (11%)

Query: 9   EKEEEEKEEEEEEEEEEEEEDEEEEEE---------DEEEEEEEEEEEEEEEEEEELQAG 59
               + K E EE + E  +E+E +            D     EE     E+++     A 
Sbjct: 329 NLIAKTKTELEETQRELRKEEEAKGISWQRRWFKDFDYSVTPEEGALVPEKDDTFLKLAS 388

Query: 60  GHGIAICQCKSAKIVTTK 77
              ++     S  +V  K
Sbjct: 389 ALNLSTKNAPSGTLVGDK 406


>d1umda_ c.36.1.11 (A:) Branched-chain alpha-keto acid
           dehydrogenase, PP module {Thermus thermophilus [TaxId:
           274]}
          Length = 362

 Score = 23.3 bits (49), Expect = 10.0
 Identities = 14/56 (25%), Positives = 22/56 (39%), Gaps = 6/56 (10%)

Query: 7   EEEKEEEEKEEEEEEEEEEEEEDEEEEEEDEE------EEEEEEEEEEEEEEEEEL 56
           EE +E+  +E   E E   +E +E      E        E+      +E   +EEL
Sbjct: 307 EEWEEDVREEIRAELERGLKEAEEAGPVPPEWMFEDVFAEKPWHLLRQEALLKEEL 362


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.292    0.119    0.301 

Gapped
Lambda     K      H
   0.267   0.0654    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 480,278
Number of extensions: 27706
Number of successful extensions: 1327
Number of sequences better than 10.0: 1
Number of HSP's gapped: 680
Number of HSP's successfully gapped: 466
Length of query: 117
Length of database: 2,407,596
Length adjustment: 74
Effective length of query: 43
Effective length of database: 1,391,576
Effective search space: 59837768
Effective search space used: 59837768
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 17 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 44 (21.6 bits)
S2: 47 (22.0 bits)