Query psy12048
Match_columns 267
No_of_seqs 184 out of 323
Neff 3.8
Searched_HMMs 46136
Date Fri Aug 16 17:17:10 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy12048.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/12048hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4325|consensus 100.0 1.8E-35 3.9E-40 257.3 14.5 177 3-251 20-210 (212)
2 PF09282 Mago-bind: Mago bindi 99.5 1.3E-15 2.8E-20 97.0 0.4 26 2-27 2-27 (27)
3 KOG2315|consensus 99.1 1.4E-10 3.1E-15 115.6 8.4 53 196-250 514-566 (566)
4 COG5354 Uncharacterized protei 97.1 0.00051 1.1E-08 69.3 4.7 48 199-248 511-558 (561)
5 KOG4325|consensus 96.4 0.0055 1.2E-07 54.7 5.3 40 80-120 40-79 (212)
6 PF14282 FlxA: FlxA-like prote 65.9 28 0.0006 28.2 6.6 50 199-252 18-67 (106)
7 TIGR03091 SASP_sspK small, aci 48.1 7.8 0.00017 26.0 0.5 10 7-16 12-21 (32)
8 PF11855 DUF3375: Protein of u 47.1 58 0.0013 32.7 6.7 39 194-232 138-176 (478)
9 PF08176 SspK: Small acid-solu 31.5 21 0.00045 25.9 0.6 10 7-16 27-36 (47)
10 PF14193 DUF4315: Domain of un 29.5 1.4E+02 0.0031 23.7 5.0 39 196-236 18-57 (83)
11 PF06297 PET: PET Domain; Int 29.4 17 0.00038 30.0 -0.1 43 50-109 24-66 (106)
12 PF13864 Enkurin: Calmodulin-b 27.3 1.4E+02 0.003 23.6 4.7 53 194-252 38-90 (98)
13 PRK03081 sspK acid-soluble spo 26.9 28 0.0006 25.5 0.6 10 7-16 26-35 (50)
14 PF13243 Prenyltrans_1: Prenyl 26.9 21 0.00046 27.1 0.0 14 3-16 6-19 (109)
15 COG3880 Modulator of heat shoc 26.5 1E+02 0.0022 27.9 4.2 20 237-256 156-175 (176)
16 PF12017 Tnp_P_element: Transp 25.5 1.3E+02 0.0029 27.9 4.9 37 197-237 29-65 (236)
17 PF13234 rRNA_proc-arch: rRNA- 24.3 1.9E+02 0.0041 26.3 5.7 54 199-252 208-265 (268)
18 PF03962 Mnd1: Mnd1 family; I 23.1 3.6E+02 0.0079 23.9 7.0 28 226-253 100-127 (188)
19 PF04568 IATP: Mitochondrial A 20.2 72 0.0016 26.2 1.9 9 242-250 89-97 (100)
No 1
>KOG4325|consensus
Probab=100.00 E-value=1.8e-35 Score=257.29 Aligned_cols=177 Identities=37% Similarity=0.546 Sum_probs=128.7
Q ss_pred cccCCCcCCCCCcccceeccCCCCCCCCcccccchhHHHHhhccCCCCCCCCCCCCCCCCCCCCCCCCCccccccCcCCC
Q psy12048 3 VYIQPSRRPDGTFRKAIRVKAGYVPQDEVPLYESKGKQFANRQAAQSIPIGLDPSHVKKPVNPQNPIPGLVILDADDLGY 82 (267)
Q Consensus 3 ~~i~~s~R~DGt~Rk~~rvr~Gy~p~eev~~y~~~~~~~~k~~~~~~~PPG~~pe~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (267)
+||.+||||||||||+||||+||+|+|||++|+|++..|++..+.+ +||||+|+.++++ +++.
T Consensus 20 k~ia~TqRPDGT~RK~~RikeGYtPedEVp~YenK~~kffKek~eq-~PPGlePdaaa~~-kpk~--------------- 82 (212)
T KOG4325|consen 20 KIIAPTQRPDGTLRKPIRIKEGYTPEDEVPKYENKGSKFFKEKAEQ-GPPGLEPDAAAKP-KPKA--------------- 82 (212)
T ss_pred eeeccccCCCCccccceeccCCCCchhhhhhhhhhhhHHHhhhhhc-CCCCCCCCCCCCC-CCCc---------------
Confidence 8999999999999999999999999999999999999999998843 7999999977732 2211
Q ss_pred CCCCCchhhhhhhhhhhhhhhhccCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCChHHHHHHHHhhhHhhhhhhh
Q psy12048 83 VPQDEVPLYESKGKQFANRQAAQSIPIGLDPSHVKKPVNPQNPIPGLPPAPSELNFDNLSPEELEKRIKNLKKKVREITV 162 (267)
Q Consensus 83 ~pq~~v~~~~~k~k~~~kr~q~~~~p~g~~~~~~~kp~~~~~~~~gl~ksak~~~~~N~~~~~~krkekrkk~~v~~~~~ 162 (267)
+.-..|||++++++ | .||++++..+.....++
T Consensus 83 ---------------------------------------~eggEpglsktakR----n-----lKkeek~qaqaEK~eae 114 (212)
T KOG4325|consen 83 ---------------------------------------AEGGEPGLSKTAKR----N-----LKKEEKLQAQAEKAEAE 114 (212)
T ss_pred ---------------------------------------ccCCCccchhHHHh----h-----hhHHHHHHHHHHhhcch
Confidence 22336899999998 8 88888776643222222
Q ss_pred -----ccC--CCc----cc---ccccccccCCCCCCCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCC
Q psy12048 163 -----QVT--HPV----EM---PRQLNLKVSLKPPAPSELNFDNLSPEELEKRIKNLKKKVREIKTLEQKIESGEIKNPE 228 (267)
Q Consensus 163 -----~~~--~~~----~~---~~~~~~~~~~~~p~~~~~~~~~~~~~e~eKKiRnLkKKLRqIEeLk~K~~sGelk~L~ 228 (267)
.+. +++ ++ ..+.+...+.+.|. ..+....++++||||+|+||||+.|+|++++++|++ +
T Consensus 115 ea~S~sldsqkVnleasa~~~~apqgn~aa~~aA~d----~~dsaa~edkaKkIkaLKKKiR~tEalQQkiaagdl---n 187 (212)
T KOG4325|consen 115 EAGSASLDSQKVNLEASAMEALAPQGNNAACGAAPD----PGDSAAGEDKAKKIKALKKKIRLTEALQQKIAAGDL---N 187 (212)
T ss_pred hhhccccCccccchhhhhhhccCcccCcccccCCCC----CCcccchhhHHHHHHHHHHHHHHHHHHHHHHhcccC---C
Confidence 111 111 00 11111222221111 123345689999999999999999999999999985 5
Q ss_pred HHHHHHHhchHHHHHHHHHhhhh
Q psy12048 229 KDQLEKLQRKPDLLSEIMALKLS 251 (267)
Q Consensus 229 ~eQleKl~k~~el~~EL~~Le~~ 251 (267)
++|++|+.+..+|+.|++.||..
T Consensus 188 ~~qkEkfeKLaerRa~eeaLED~ 210 (212)
T KOG4325|consen 188 PEQKEKFEKLAERRAEEEALEDK 210 (212)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhh
Confidence 78888888888888888888753
No 2
>PF09282 Mago-bind: Mago binding; InterPro: IPR015362 Members of this family adopt a structure consisting of a small globular all-beta-domain, with a three-stranded beta-sheet and a contiguous beta-hairpin. They bind to Mago alpha-helices via extensive electrostatic interactions and at a beta2-beta3 loop via hydrophobic interactions []. ; GO: 0005515 protein binding; PDB: 1RK8_C.
Probab=99.53 E-value=1.3e-15 Score=96.96 Aligned_cols=26 Identities=58% Similarity=1.012 Sum_probs=13.7
Q ss_pred CcccCCCcCCCCCcccceeccCCCCC
Q psy12048 2 GVYIQPSRRPDGTFRKAIRVKAGYVP 27 (267)
Q Consensus 2 ~~~i~~s~R~DGt~Rk~~rvr~Gy~p 27 (267)
.+|||+|+||||||||+||||+||+|
T Consensus 2 er~I~~s~RpDGt~RK~irvr~GY~P 27 (27)
T PF09282_consen 2 ERIIPASQRPDGTWRKEIRVRPGYTP 27 (27)
T ss_dssp -EEE--EE-TTS-EE--EE--TT---
T ss_pred ccCcCcccCCCCCcccceeccCCcCC
Confidence 47999999999999999999999998
No 3
>KOG2315|consensus
Probab=99.12 E-value=1.4e-10 Score=115.60 Aligned_cols=53 Identities=43% Similarity=0.690 Sum_probs=51.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCHHHHHHHhchHHHHHHHHHhhh
Q psy12048 196 EELEKRIKNLKKKVREIKTLEQKIESGEIKNPEKDQLEKLQRKPDLLSEIMALKL 250 (267)
Q Consensus 196 ~e~eKKiRnLkKKLRqIEeLk~K~~sGelk~L~~eQleKl~k~~el~~EL~~Le~ 250 (267)
.+.+||||+|.||||.||.||++++.|+ +|+.+||+||+++..|+.||+.|++
T Consensus 514 ~~~ekKir~L~kkLraIe~LK~r~a~Ge--~Le~nQl~kIq~E~~~l~ELk~L~~ 566 (566)
T KOG2315|consen 514 SEEEKKIRSLLKKLRAIEALKERMANGE--QLEVNQLNKIQKEPKLLSELKKLGW 566 (566)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHhccc--ccCHHHHHHHhhhHHHHHHHHhhcC
Confidence 3889999999999999999999999999 9999999999999999999999974
No 4
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=97.12 E-value=0.00051 Score=69.30 Aligned_cols=48 Identities=38% Similarity=0.625 Sum_probs=46.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCCCCCHHHHHHHhchHHHHHHHHHh
Q psy12048 199 EKRIKNLKKKVREIKTLEQKIESGEIKNPEKDQLEKLQRKPDLLSEIMAL 248 (267)
Q Consensus 199 eKKiRnLkKKLRqIEeLk~K~~sGelk~L~~eQleKl~k~~el~~EL~~L 248 (267)
+.|||.|-||||.|+.|++++.+|| .|+-.|+.||..+.+++.||+.|
T Consensus 511 e~ki~sl~~~lRaIe~lker~~~~e--ele~~qv~kietee~VlsElk~l 558 (561)
T COG5354 511 EDKIRSLLKKLRAIEALKERMRSGE--ELEVIQVNKIETEEEVLSELKEL 558 (561)
T ss_pred HHHHHHHHHHhhhhhcchhhccccc--chhhhhhhhhhhHHHHHHHhhhc
Confidence 3499999999999999999999999 99999999999999999999998
No 5
>KOG4325|consensus
Probab=96.43 E-value=0.0055 Score=54.73 Aligned_cols=40 Identities=48% Similarity=0.861 Sum_probs=35.3
Q ss_pred CCCCCCCCchhhhhhhhhhhhhhhhccCCCCCCCCCCCCCC
Q psy12048 80 LGYVPQDEVPLYESKGKQFANRQAAQSIPIGLDPSHVKKPV 120 (267)
Q Consensus 80 ~~~~pq~~v~~~~~k~k~~~kr~q~~~~p~g~~~~~~~kp~ 120 (267)
-||+|+|+|..|++|+-.|-+.+. ...||||.|...++|.
T Consensus 40 eGYtPedEVp~YenK~~kffKek~-eq~PPGlePdaaa~~k 79 (212)
T KOG4325|consen 40 EGYTPEDEVPKYENKGSKFFKEKA-EQGPPGLEPDAAAKPK 79 (212)
T ss_pred CCCCchhhhhhhhhhhhHHHhhhh-hcCCCCCCCCCCCCCC
Confidence 589999999999999999988875 4479999998888877
No 6
>PF14282 FlxA: FlxA-like protein
Probab=65.85 E-value=28 Score=28.18 Aligned_cols=50 Identities=18% Similarity=0.371 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCCCCCHHHHHHHhchHHHHHHHHHhhhhc
Q psy12048 199 EKRIKNLKKKVREIKTLEQKIESGEIKNPEKDQLEKLQRKPDLLSEIMALKLSL 252 (267)
Q Consensus 199 eKKiRnLkKKLRqIEeLk~K~~sGelk~L~~eQleKl~k~~el~~EL~~Le~~l 252 (267)
+..|..|++.|..+.+-=..+.... .|++++.. .+...|..+|..|+..+
T Consensus 18 ~~~I~~L~~Qi~~Lq~ql~~l~~~~--~~~~e~k~--~q~q~Lq~QI~~LqaQI 67 (106)
T PF14282_consen 18 DSQIEQLQKQIKQLQEQLQELSQDS--DLDAEQKQ--QQIQLLQAQIQQLQAQI 67 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHccc--CCCHHHHH--HHHHHHHHHHHHHHHHH
Confidence 6778888877766655444555544 56666554 67778888888887654
No 7
>TIGR03091 SASP_sspK small, acid-soluble spore protein K. This protein family is restricted to a subset of endospore-forming bacteria such as Bacillus subtilis, all of which are in the Firmicutes (low-GC Gram-positive) lineage. It is a minor SASP (small, acid-soluble spore protein) designated SspK.
Probab=48.14 E-value=7.8 Score=25.99 Aligned_cols=10 Identities=60% Similarity=1.086 Sum_probs=8.7
Q ss_pred CCcCCCCCcc
Q psy12048 7 PSRRPDGTFR 16 (267)
Q Consensus 7 ~s~R~DGt~R 16 (267)
+|.|||||++
T Consensus 12 aSKR~dGtin 21 (32)
T TIGR03091 12 ASKRPDGTIN 21 (32)
T ss_pred hhcCCCCCcc
Confidence 6899999985
No 8
>PF11855 DUF3375: Protein of unknown function (DUF3375); InterPro: IPR021804 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 479 to 499 amino acids in length.
Probab=47.10 E-value=58 Score=32.73 Aligned_cols=39 Identities=23% Similarity=0.463 Sum_probs=35.5
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCHHHH
Q psy12048 194 SPEELEKRIKNLKKKVREIKTLEQKIESGEIKNPEKDQL 232 (267)
Q Consensus 194 ~~~e~eKKiRnLkKKLRqIEeLk~K~~sGelk~L~~eQl 232 (267)
..++.+.+|..|..++.+|+.-=+++.+|++..|+.+|+
T Consensus 138 ~~~Dp~~Ri~~Le~e~~~i~~EI~~l~aG~~~~ld~~~~ 176 (478)
T PF11855_consen 138 TDPDPERRIAELEREIAEIDAEIDRLEAGDVPVLDDTQA 176 (478)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHH
Confidence 346889999999999999999889999999999999987
No 9
>PF08176 SspK: Small acid-soluble spore protein K family; InterPro: IPR012611 This family consists of the small acid-soluble spore proteins (SASP) belonging to the K type (sspK). The sspK are unique to the spores of Bacillus subtilis and are expressed only in the forespore compartment of sporulating cells of this organism. The sspK gene is monocistronic and transcription is primarily by the RNA polymerase with the forespore-specific sigma factor, sigma-G. Mutation deleting sspK results in loss of SspK from the spore but had no discernible effect on sporulation, spore properties or spore germination [].; GO: 0030436 asexual sporulation, 0042601 endospore-forming forespore
Probab=31.54 E-value=21 Score=25.94 Aligned_cols=10 Identities=50% Similarity=0.843 Sum_probs=8.6
Q ss_pred CCcCCCCCcc
Q psy12048 7 PSRRPDGTFR 16 (267)
Q Consensus 7 ~s~R~DGt~R 16 (267)
+|.|||||+.
T Consensus 27 aSKR~dGtiN 36 (47)
T PF08176_consen 27 ASKRADGTIN 36 (47)
T ss_pred hhcCCCCCcc
Confidence 5899999985
No 10
>PF14193 DUF4315: Domain of unknown function (DUF4315)
Probab=29.53 E-value=1.4e+02 Score=23.69 Aligned_cols=39 Identities=23% Similarity=0.359 Sum_probs=29.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHH-HHHHcCCCCCCCHHHHHHHh
Q psy12048 196 EELEKRIKNLKKKVREIKTLE-QKIESGEIKNPEKDQLEKLQ 236 (267)
Q Consensus 196 ~e~eKKiRnLkKKLRqIEeLk-~K~~sGelk~L~~eQleKl~ 236 (267)
.+.+.|+|.|..++++.|-++ -.+-.+- .|+++||.-+-
T Consensus 18 ae~Q~rlK~Le~qk~E~EN~EIv~~VR~~--~mtp~eL~~~L 57 (83)
T PF14193_consen 18 AELQARLKELEAQKTEAENLEIVQMVRSM--KMTPEELAAFL 57 (83)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHc--CCCHHHHHHHH
Confidence 466778888998888888887 4455566 89999997543
No 11
>PF06297 PET: PET Domain; InterPro: IPR010442 The PET domain is a ~110 amino acid motif in the N-terminal part of LIM domain proteins. The domain was described in Drosophila proteins involved in cell differentiation and is named after Prickle, Espinas and Testin. PET domain proteins contain about three zinc-binding LIM domains (see PDOC00382 from INTERPRO, IPR001781 from INTERPRO) and are found among metazoans. The PET domain has been suggested to play a role in protein-protein interactions with proteins involved in planar polarity signalling or organisation of the cytoskeleton []. Some proteins known to contain a PET domain: Mammalian testin protein (Q9UGI8 from SWISSPROT), which may function as a tumour suppressor. Mammalian LIM domain only protein 6 (LMO6/Prickle3, O43900 from SWISSPROT). Fruit fly prickle (A1Z6W3 from SWISSPROT) and espinas (Q9U1I1 from SWISSPROT) proteins encoded by the tissue polarity gene prickle (pk), involved in the control of orientation of bristles and hairs. Mammalian prickle-like proteins 1 (Q96MT3 from SWISSPROT) and 2 (Q7Z3G6 from SWISSPROT). ; GO: 0008270 zinc ion binding
Probab=29.39 E-value=17 Score=30.02 Aligned_cols=43 Identities=30% Similarity=0.638 Sum_probs=32.2
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCccccccCcCCCCCCCCchhhhhhhhhhhhhhhhccCCC
Q psy12048 50 IPIGLDPSHVKKPVNPQNPIPGLVILDADDLGYVPQDEVPLYESKGKQFANRQAAQSIPI 109 (267)
Q Consensus 50 ~PPG~~pe~~~~~~~~~~~~~~~~~~~~~~~~~~pq~~v~~~~~k~k~~~kr~q~~~~p~ 109 (267)
+|||++++.+. . --.-.|.+.|++.-+-|.+++.++-...+|+
T Consensus 24 vPpgl~~~~v~-~----------------Ym~~LP~~~vP~~gS~Ge~~R~~QL~~QLP~ 66 (106)
T PF06297_consen 24 VPPGLSPELVE-Q----------------YMSCLPEEKVPVVGSPGEKYRRRQLLYQLPP 66 (106)
T ss_pred cCCCCChHHHH-H----------------HHHhCCCcCCCCCCCHHHHHHHHHHHHcCCc
Confidence 78999887555 1 1223678888888899999999988777754
No 12
>PF13864 Enkurin: Calmodulin-binding
Probab=27.26 E-value=1.4e+02 Score=23.56 Aligned_cols=53 Identities=32% Similarity=0.370 Sum_probs=39.7
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCHHHHHHHhchHHHHHHHHHhhhhc
Q psy12048 194 SPEELEKRIKNLKKKVREIKTLEQKIESGEIKNPEKDQLEKLQRKPDLLSEIMALKLSL 252 (267)
Q Consensus 194 ~~~e~eKKiRnLkKKLRqIEeLk~K~~sGelk~L~~eQleKl~k~~el~~EL~~Le~~l 252 (267)
+..+...-+..|+++..++..==+++- +.-+=+-+..++..|+.+|.+|+.++
T Consensus 38 ~eeER~~lL~~Lk~~~~el~~ey~~lp------~~~DT~~~~~rK~~lE~~L~qlE~dI 90 (98)
T PF13864_consen 38 SEEERQELLEGLKKNWDELNKEYQKLP------FSIDTLRKKRRKEELEKELKQLEKDI 90 (98)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHhCC------cccCCHHHHHHHHHHHHHHHHHHHHH
Confidence 456788889999999887765323222 22456778899999999999999876
No 13
>PRK03081 sspK acid-soluble spore protein K; Provisional
Probab=26.94 E-value=28 Score=25.52 Aligned_cols=10 Identities=50% Similarity=1.002 Sum_probs=8.6
Q ss_pred CCcCCCCCcc
Q psy12048 7 PSRRPDGTFR 16 (267)
Q Consensus 7 ~s~R~DGt~R 16 (267)
+|.|||||+.
T Consensus 26 ASKR~dGtiN 35 (50)
T PRK03081 26 ASKRPNGTIN 35 (50)
T ss_pred hhcCCCCCcc
Confidence 6899999975
No 14
>PF13243 Prenyltrans_1: Prenyltransferase-like; PDB: 3SDR_A 3SAE_A 3SDV_A 3SDT_A 3SDQ_A 3SDU_A.
Probab=26.86 E-value=21 Score=27.13 Aligned_cols=14 Identities=21% Similarity=0.686 Sum_probs=0.0
Q ss_pred cccCCCcCCCCCcc
Q psy12048 3 VYIQPSRRPDGTFR 16 (267)
Q Consensus 3 ~~i~~s~R~DGt~R 16 (267)
.+|-..|+|||+|.
T Consensus 6 ~~l~~~Q~~dG~W~ 19 (109)
T PF13243_consen 6 EWLLSQQNPDGSWG 19 (109)
T ss_dssp --------------
T ss_pred cccccccccccccc
Confidence 46778999999993
No 15
>COG3880 Modulator of heat shock repressor CtsR, McsA [Signal transduction mechanisms]
Probab=26.51 E-value=1e+02 Score=27.92 Aligned_cols=20 Identities=25% Similarity=0.312 Sum_probs=16.4
Q ss_pred chHHHHHHHHHhhhhcCCCC
Q psy12048 237 RKPDLLSEIMALKLSLHGEE 256 (267)
Q Consensus 237 k~~el~~EL~~Le~~l~~~~ 256 (267)
.-+.++++|..|+....|++
T Consensus 156 eAA~iRDqIr~Lk~k~~~dd 175 (176)
T COG3880 156 EAAVIRDQIRALKAKNGGDD 175 (176)
T ss_pred HHHHHHHHHHHHHhhcCCCC
Confidence 45688999999999887765
No 16
>PF12017 Tnp_P_element: Transposase protein; InterPro: IPR021896 Protein in this family are transposases found in insects. This region is about 230 amino acids in length and is found associated with PF05485 from PFAM.
Probab=25.47 E-value=1.3e+02 Score=27.87 Aligned_cols=37 Identities=32% Similarity=0.548 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCHHHHHHHhc
Q psy12048 197 ELEKRIKNLKKKVREIKTLEQKIESGEIKNPEKDQLEKLQR 237 (267)
Q Consensus 197 e~eKKiRnLkKKLRqIEeLk~K~~sGelk~L~~eQleKl~k 237 (267)
..++.++.|+++|...+.|++.+. . -+..+||..|..
T Consensus 29 ~le~~l~~Lk~~l~~~~~l~~~L~--~--~Fs~~Qi~~lk~ 65 (236)
T PF12017_consen 29 RLEKELKKLKQKLEKYQKLENSLK--Q--IFSEDQIRNLKN 65 (236)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH--H--hCcHHHHHHHhc
Confidence 456777777888877788877664 4 577888887764
No 17
>PF13234 rRNA_proc-arch: rRNA-processing arch domain; PDB: 4A4K_E 4A4Z_A 2XGJ_B 3L9O_A.
Probab=24.31 E-value=1.9e+02 Score=26.28 Aligned_cols=54 Identities=31% Similarity=0.528 Sum_probs=38.8
Q ss_pred HHHHH--HHHHHHHHHHHHHHHHHcCCC-CCCC-HHHHHHHhchHHHHHHHHHhhhhc
Q psy12048 199 EKRIK--NLKKKVREIKTLEQKIESGEI-KNPE-KDQLEKLQRKPDLLSEIMALKLSL 252 (267)
Q Consensus 199 eKKiR--nLkKKLRqIEeLk~K~~sGel-k~L~-~eQleKl~k~~el~~EL~~Le~~l 252 (267)
+=+|+ .+.+-++.++.|+.++.+-.+ ..++ .++++.+.++..|.+||+.|...+
T Consensus 208 DmkI~d~~~~e~~~k~~~Le~rl~~~~~~~~~~~~~~~~~~~~k~~l~~~i~~Lk~~l 265 (268)
T PF13234_consen 208 DMKIKDPEFVELVKKIEALEKRLSSHPLHKCPDFEEHYALYHEKAELQEEIKALKRQL 265 (268)
T ss_dssp HH----HHHHHHHHHHHHHHHHHHHSCHCCSSSHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hCCCCcHHHHHHHHHHHHHHHHHHhCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34454 567788899999988876543 1122 467799999999999999998765
No 18
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=23.07 E-value=3.6e+02 Score=23.90 Aligned_cols=28 Identities=25% Similarity=0.330 Sum_probs=20.7
Q ss_pred CCCHHHHHHHhchHHHHHHHHHhhhhcC
Q psy12048 226 NPEKDQLEKLQRKPDLLSEIMALKLSLH 253 (267)
Q Consensus 226 ~L~~eQleKl~k~~el~~EL~~Le~~l~ 253 (267)
.-+.+-...|.+..+|..+++.|...+.
T Consensus 100 ~~~~eR~~~l~~l~~l~~~~~~l~~el~ 127 (188)
T PF03962_consen 100 EESEEREELLEELEELKKELKELKKELE 127 (188)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445666778888888888888877664
No 19
>PF04568 IATP: Mitochondrial ATPase inhibitor, IATP; InterPro: IPR007648 ATP synthase inhibitor prevents the enzyme from switching to ATP hydrolysis during collapse of the electrochemical gradient, for example during oxygen deprivation [] ATP synthase inhibitor forms a one to one complex with the F1 ATPase, possibly by binding at the alpha-beta interface. It is thought to inhibit ATP synthesis by preventing the release of ATP []. The minimum inhibitory region for bovine inhibitor (P01096 from SWISSPROT) is from residues 39 to 72 []. The inhibitor has two oligomeric states, dimer (the active state) and tetramer. At low pH , the inhibitor forms a dimer via antiparallel coiled coil interactions between the C-terminal regions of two monomers. At high pH, the inhibitor forms tetramers and higher oligomers by coiled coil interactions involving the N terminus and inhibitory region, thus preventing the inhibitory activity []. ; GO: 0004857 enzyme inhibitor activity, 0045980 negative regulation of nucleotide metabolic process, 0005739 mitochondrion; PDB: 1GMJ_B 1OHH_H 1HF9_B 2V7Q_J.
Probab=20.18 E-value=72 Score=26.17 Aligned_cols=9 Identities=33% Similarity=0.209 Sum_probs=4.3
Q ss_pred HHHHHHhhh
Q psy12048 242 LSEIMALKL 250 (267)
Q Consensus 242 ~~EL~~Le~ 250 (267)
.++|+.|+.
T Consensus 89 ~k~i~~le~ 97 (100)
T PF04568_consen 89 RKEIDELEK 97 (100)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 444555544
Done!