Query psy12048
Match_columns 267
No_of_seqs 184 out of 323
Neff 3.8
Searched_HMMs 29240
Date Fri Aug 16 17:17:35 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy12048.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/12048hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1rk8_C PYM protein, within the 99.8 1.2E-22 4.1E-27 148.3 1.3 48 2-51 10-58 (58)
2 1rk8_C PYM protein, within the 92.1 0.033 1.1E-06 40.7 0.5 23 80-102 31-53 (58)
3 3twe_A Alpha4H; unknown functi 70.7 2.9 9.8E-05 25.8 2.3 15 196-210 11-25 (27)
4 1m46_B IQ4, IQ4 motif from MYO 39.0 25 0.00087 21.4 2.7 18 200-219 4-21 (26)
5 4g3b_A Alpha4F3D; alpha helix, 35.5 26 0.00089 21.4 2.3 15 196-210 11-25 (26)
6 3nmd_A CGMP dependent protein 21.1 1.1E+02 0.0036 23.0 3.9 43 202-249 25-67 (72)
7 3ljc_A ATP-dependent protease 20.5 1.6E+02 0.0054 25.2 5.6 45 204-253 205-249 (252)
8 2l5g_B Putative uncharacterize 19.2 86 0.0029 21.4 2.8 18 198-215 21-38 (42)
9 3he5_B Synzip2; heterodimeric 19.0 1.7E+02 0.0057 20.3 4.3 41 198-253 8-48 (52)
10 2i32_E Histone regulatory homo 14.4 31 0.0011 24.9 -0.3 20 8-31 37-56 (57)
No 1
>1rk8_C PYM protein, within the BGCN gene intron protein, CG30176-PA; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: b.72.3.1
Probab=99.85 E-value=1.2e-22 Score=148.26 Aligned_cols=48 Identities=71% Similarity=1.177 Sum_probs=25.2
Q ss_pred CcccCCCcCCCCCcccceeccCCCCCCCCcccccchhHH-HHhhccCCCCC
Q psy12048 2 GVYIQPSRRPDGTFRKAIRVKAGYVPQDEVPLYESKGKQ-FANRQAAQSIP 51 (267)
Q Consensus 2 ~~~i~~s~R~DGt~Rk~~rvr~Gy~p~eev~~y~~~~~~-~~k~~~~~~~P 51 (267)
++|||+|+||||||||+||||+||+|||||++|++++++ |.+++. +||
T Consensus 10 ~~~I~~s~RpDGT~RK~irVr~GY~Pqeev~~Y~~k~~~~~~~r~~--gvp 58 (58)
T 1rk8_C 10 GKFIPATKRPDGTWRKARRVKDGYVPQEEVPLYESKGKQFVAQRQA--GVP 58 (58)
T ss_dssp EEEECCEECTTSCEECCEECCTTCCC-------------------------
T ss_pred CEEcccccCCCCccccceeccCCcCCHHHhhhhhhhhhHHHHhhcc--CCC
Confidence 579999999999999999999999999999999999998 566665 565
No 2
>1rk8_C PYM protein, within the BGCN gene intron protein, CG30176-PA; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: b.72.3.1
Probab=92.14 E-value=0.033 Score=40.66 Aligned_cols=23 Identities=74% Similarity=1.223 Sum_probs=4.5
Q ss_pred CCCCCCCCchhhhhhhhhhhhhh
Q psy12048 80 LGYVPQDEVPLYESKGKQFANRQ 102 (267)
Q Consensus 80 ~~~~pq~~v~~~~~k~k~~~kr~ 102 (267)
.||+||++|.+|+++++++.+..
T Consensus 31 ~GY~Pqeev~~Y~~k~~~~~~~r 53 (58)
T 1rk8_C 31 DGYVPQEEVPLYESKGKQFVAQR 53 (58)
T ss_dssp TTCCC------------------
T ss_pred CCcCCHHHhhhhhhhhhHHHHhh
Confidence 69999999999999998865543
No 3
>3twe_A Alpha4H; unknown function; HET: PGE; 1.36A {Synthetic} PDB: 3twf_A* 4g4m_A*
Probab=70.71 E-value=2.9 Score=25.84 Aligned_cols=15 Identities=47% Similarity=0.973 Sum_probs=12.7
Q ss_pred hHHHHHHHHHHHHHH
Q psy12048 196 EELEKRIKNLKKKVR 210 (267)
Q Consensus 196 ~e~eKKiRnLkKKLR 210 (267)
++.+.++|.|+||||
T Consensus 11 edlqerlrklrkklr 25 (27)
T 3twe_A 11 EDLQERLRKLRKKLR 25 (27)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhc
Confidence 467889999999997
No 4
>1m46_B IQ4, IQ4 motif from MYO2P, A class V myosin; protein-peptide complex, myosin light chain, cell cycle protein; 2.10A {Saccharomyces cerevisiae}
Probab=38.99 E-value=25 Score=21.43 Aligned_cols=18 Identities=44% Similarity=0.739 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q psy12048 200 KRIKNLKKKVREIKTLEQKI 219 (267)
Q Consensus 200 KKiRnLkKKLRqIEeLk~K~ 219 (267)
.-|-||+||||. +|++++
T Consensus 4 rtitnlqkkirk--elkqrq 21 (26)
T 1m46_B 4 RTITNLQKKIRK--ELKQRQ 21 (26)
T ss_dssp HHHHHHHHHHHH--HHHHHH
T ss_pred HHHHHHHHHHHH--HHHHHH
Confidence 457788888874 566554
No 5
>4g3b_A Alpha4F3D; alpha helix, de novo designed, fluorinated protein, coiled-C NOVO protein; HET: 6FL; 1.19A {Synthetic} PDB: 4g4l_A* 3twg_A*
Probab=35.53 E-value=26 Score=21.38 Aligned_cols=15 Identities=33% Similarity=0.778 Sum_probs=12.6
Q ss_pred hHHHHHHHHHHHHHH
Q psy12048 196 EELEKRIKNLKKKVR 210 (267)
Q Consensus 196 ~e~eKKiRnLkKKLR 210 (267)
++.+.++|..+||||
T Consensus 11 ed~qerlrk~rkklr 25 (26)
T 4g3b_A 11 EDXQERLRKXRKKLR 25 (26)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhc
Confidence 466789999999997
No 6
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=21.12 E-value=1.1e+02 Score=22.97 Aligned_cols=43 Identities=19% Similarity=0.186 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCCCCCCHHHHHHHhchHHHHHHHHHhh
Q psy12048 202 IKNLKKKVREIKTLEQKIESGEIKNPEKDQLEKLQRKPDLLSEIMALK 249 (267)
Q Consensus 202 iRnLkKKLRqIEeLk~K~~sGelk~L~~eQleKl~k~~el~~EL~~Le 249 (267)
-..|++|+.+|...++.+.. |+..=.+|=.-..+|..||+.+.
T Consensus 25 q~~L~~K~eELr~kd~~I~e-----LEk~L~ekd~eI~~LqseLDKfr 67 (72)
T 3nmd_A 25 QYALQEKIEELRQRDALIDE-----LELELDQKDELIQMLQNELDKYR 67 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHhh
Confidence 35667777777766666552 22222244444556666666554
No 7
>3ljc_A ATP-dependent protease LA; LON N-domain, allosteric enzyme, ATP-binding, DNA-binding, H nucleotide-binding, serine protease, stress respo; 2.60A {Escherichia coli}
Probab=20.54 E-value=1.6e+02 Score=25.19 Aligned_cols=45 Identities=24% Similarity=0.309 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHHHHHHcCCCCCCCHHHHHHHhchHHHHHHHHHhhhhcC
Q psy12048 204 NLKKKVREIKTLEQKIESGEIKNPEKDQLEKLQRKPDLLSEIMALKLSLH 253 (267)
Q Consensus 204 nLkKKLRqIEeLk~K~~sGelk~L~~eQleKl~k~~el~~EL~~Le~~l~ 253 (267)
.+-.+--++-+|+.++.+-- .++|+|-+|+=-|+++|+.+...|.
T Consensus 205 ~lL~~e~e~~~l~~~I~~~v-----~~~~~k~Qrey~LrEQlk~IqkELG 249 (252)
T 3ljc_A 205 AMMESEIDLLQVEKRIRNRV-----KKQMEKSQREYYLNEQMKAIQKELG 249 (252)
T ss_dssp HHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 33444456666777777655 6899999999999999999887764
No 8
>2l5g_B Putative uncharacterized protein NCOR2, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=19.24 E-value=86 Score=21.36 Aligned_cols=18 Identities=33% Similarity=0.551 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHH
Q psy12048 198 LEKRIKNLKKKVREIKTL 215 (267)
Q Consensus 198 ~eKKiRnLkKKLRqIEeL 215 (267)
.+++|-.|++||++.|+-
T Consensus 21 te~kI~~lqkKlkeLee~ 38 (42)
T 2l5g_B 21 VEQQISKLKKKQQQLEEE 38 (42)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 456888888888888764
No 9
>3he5_B Synzip2; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=18.95 E-value=1.7e+02 Score=20.30 Aligned_cols=41 Identities=32% Similarity=0.416 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCHHHHHHHhchHHHHHHHHHhhhhcC
Q psy12048 198 LEKRIKNLKKKVREIKTLEQKIESGEIKNPEKDQLEKLQRKPDLLSEIMALKLSLH 253 (267)
Q Consensus 198 ~eKKiRnLkKKLRqIEeLk~K~~sGelk~L~~eQleKl~k~~el~~EL~~Le~~l~ 253 (267)
..|+|-.|+|---|.|.= ..-|+|| ...|++||..|+..+.
T Consensus 8 lrkkiarlkkdnlqlerd-------------eqnleki--ianlrdeiarleneva 48 (52)
T 3he5_B 8 LRKKIARLKKDNLQLERD-------------EQNLEKI--IANLRDEIARLENEVA 48 (52)
T ss_dssp HHHHHHHHHHHHHHHHHH-------------HHHHHHH--HHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHhhhhhhhhhh-------------HhhHHHH--HHHHHHHHHHHHHHHh
Confidence 346666666654444431 1346776 4679999999998765
No 10
>2i32_E Histone regulatory homolog A; histone deposition, chromatin regulation, histone chaperones, ASF1, HIRA, CAF-1, replication chaperone; 2.70A {Homo sapiens}
Probab=14.43 E-value=31 Score=24.92 Aligned_cols=20 Identities=25% Similarity=0.380 Sum_probs=12.3
Q ss_pred CcCCCCCcccceeccCCCCCCCCc
Q psy12048 8 SRRPDGTFRKAIRVKAGYVPQDEV 31 (267)
Q Consensus 8 s~R~DGt~Rk~~rvr~Gy~p~eev 31 (267)
++-||| -+||+|=|+|++|+
T Consensus 37 trt~dG----Krritp~~I~p~~~ 56 (57)
T 2i32_E 37 TRTADG----RRRITPLCIAQLDT 56 (57)
T ss_dssp EECTTS----CEEEECEEC-----
T ss_pred ecCCCC----cccccceecCCCCC
Confidence 567888 46899999999885
Done!