RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy12048
(267 letters)
>d1rk8c_ b.72.3.1 (C:) Pym (Within the bgcn gene intron protein,
WIBG), N-terminal domain {Fruit fly (Drosophila
melanogaster) [TaxId: 7227]}
Length = 33
Score = 40.3 bits (94), Expect = 5e-06
Identities = 17/26 (65%), Positives = 21/26 (80%)
Query: 2 GVYIQPSRRPDGTFRKAIRVKAGYVP 27
G +I ++RPDGT+RKA RVK GYVP
Sbjct: 8 GKFIPATKRPDGTWRKARRVKDGYVP 33
>d2f9ya1 c.14.1.4 (A:4-319) Acetyl-coenzyme A carboxylase carboxyl
transferase subunit alpha, AccA {Escherichia coli
[TaxId: 562]}
Length = 316
Score = 31.2 bits (70), Expect = 0.10
Identities = 11/52 (21%), Positives = 26/52 (50%), Gaps = 3/52 (5%)
Query: 197 ELEKRIKNLKKKVREIKTLEQKIESGEIKNPEKDQLEKLQRK-PDLLSEIMA 247
+ E+ I L+ K+ + ++ E +I +++ +L+ K +L +I A
Sbjct: 4 DFEQPIAELEAKIDSLTAGSRQDEKLDINI--DEEVHRLREKSVELTRKIFA 53
Score = 25.8 bits (56), Expect = 6.1
Identities = 17/117 (14%), Positives = 38/117 (32%), Gaps = 28/117 (23%)
Query: 145 ELEKRIKNLKKKVREITVQVTHPVEMPRQLNLKVSLKPPAPSELNFDNLSPEELEKRIKN 204
+ E+ I L+ K+ L + D +++ +
Sbjct: 4 DFEQPIAELEAKIDS--------------------LTAGS----RQDEKLDINIDEEVHR 39
Query: 205 LKKKVREIKTLEQKIESGEIKNPEKDQLEKLQRKPDLLSEIMALKLSLHGEEGEGEG 261
L++K E L +KI + ++ + QL + ++P L + G+
Sbjct: 40 LREKSVE---LTRKIFA-DLGAWQIAQLARHPQRPYTLDYVRLAFDEFDELAGDRAY 92
>d1chma1 c.55.2.1 (A:2-156) Creatinase {Pseudomonas putida [TaxId:
303]}
Length = 155
Score = 29.0 bits (64), Expect = 0.32
Identities = 8/43 (18%), Positives = 16/43 (37%), Gaps = 7/43 (16%)
Query: 169 EMPRQLNLKVSLKPPAPSELNFDNLSPEELEKRIKNLKKKVRE 211
+MP+ L ++ K + S +E R L+ +
Sbjct: 1 QMPKTLRIRNGDKVRST-------FSAQEYANRQARLRAHLAA 36
>d1e52a_ a.2.9.1 (A:) C-terminal UvrC-binding domain of UvrB
{Escherichia coli [TaxId: 562]}
Length = 56
Score = 26.6 bits (59), Expect = 0.56
Identities = 5/20 (25%), Positives = 14/20 (70%)
Query: 140 NLSPEELEKRIKNLKKKVRE 159
++SP+ L+++I L+ + +
Sbjct: 9 DMSPKALQQKIHELEGLMMQ 28
Score = 26.6 bits (59), Expect = 0.56
Identities = 5/20 (25%), Positives = 14/20 (70%)
Query: 192 NLSPEELEKRIKNLKKKVRE 211
++SP+ L+++I L+ + +
Sbjct: 9 DMSPKALQQKIHELEGLMMQ 28
>d1cc8a_ d.58.17.1 (A:) ATX1 metallochaperone protein (ATOX1)
{Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 72
Score = 27.0 bits (60), Expect = 0.66
Identities = 8/24 (33%), Positives = 13/24 (54%)
Query: 192 NLSPEELEKRIKNLKKKVREIKTL 215
L + + ++IK K+VR K L
Sbjct: 49 TLPYDFILEKIKKTGKEVRSGKQL 72
>d1j2pa_ d.153.1.4 (A:) Proteasome alpha subunit (non-catalytic)
{Archaeon Archaeoglobus fulgidus [TaxId: 2234]}
Length = 243
Score = 28.1 bits (62), Expect = 0.92
Identities = 8/23 (34%), Positives = 16/23 (69%)
Query: 138 FDNLSPEELEKRIKNLKKKVREI 160
F +SPEEL+ ++ +++RE+
Sbjct: 218 FKEVSPEELKPYVERANERIREL 240
Score = 28.1 bits (62), Expect = 0.92
Identities = 8/23 (34%), Positives = 16/23 (69%)
Query: 190 FDNLSPEELEKRIKNLKKKVREI 212
F +SPEEL+ ++ +++RE+
Sbjct: 218 FKEVSPEELKPYVERANERIREL 240
>d1v2za_ a.186.1.1 (A:) Circadian clock protein KaiA, C-terminal
domain {Thermosynechococcus elongatus bp-1 [TaxId:
197221]}
Length = 106
Score = 26.6 bits (59), Expect = 1.4
Identities = 8/40 (20%), Positives = 16/40 (40%), Gaps = 8/40 (20%)
Query: 190 FDNLSPEELEKRIKNLKKKVREI--------KTLEQKIES 221
F +SP + K + L+ R I + ++I+
Sbjct: 6 FRRMSPADKRKLLDELRSIYRTIVLEYFNTDAKVNERIDE 45
>d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major
[TaxId: 5664]}
Length = 174
Score = 27.3 bits (59), Expect = 1.4
Identities = 9/77 (11%), Positives = 32/77 (41%), Gaps = 2/77 (2%)
Query: 137 NFDNLSPEELEKRIKNLKKKVREITVQVTHPVEMPRQLNLKVSLKPPAPSELNFDNLSPE 196
+ S E L +R+ + + + ++ + + + + L +N + E
Sbjct: 100 VVLHTSTEVLFERLTKRQYSEAKRAENMEAEIQCICEEEARDAYEDDI--VLVRENDTLE 157
Query: 197 ELEKRIKNLKKKVREIK 213
++ ++ ++++V +K
Sbjct: 158 QMAATVEEIRERVEVLK 174
>d1r8ja1 a.186.1.1 (A:177-282) Circadian clock protein KaiA,
C-terminal domain {Synechococcus elongatus PCC 7942
[TaxId: 1140]}
Length = 106
Score = 26.2 bits (58), Expect = 1.7
Identities = 10/40 (25%), Positives = 16/40 (40%), Gaps = 8/40 (20%)
Query: 190 FDNLSPEELEKRIKNLKKKVREI--------KTLEQKIES 221
NL E +K + ++ REI L Q I++
Sbjct: 3 LRNLPAYESQKLHQAMQTSYREIVLSYFSPNSNLNQSIDN 42
>d1w25a1 c.23.1.1 (A:2-140) Response regulator PleD, receiver domain
{Caulobacter crescentus [TaxId: 155892]}
Length = 139
Score = 26.7 bits (58), Expect = 1.8
Identities = 8/30 (26%), Positives = 13/30 (43%)
Query: 194 SPEELEKRIKNLKKKVREIKTLEQKIESGE 223
L R+++L + I L Q+ SG
Sbjct: 107 DDVMLFARVRSLTRFKLVIDELRQREASGR 136
>d1tj7a_ a.127.1.1 (A:) Argininosuccinate lyase/delta-crystallin
{Escherichia coli [TaxId: 562]}
Length = 455
Score = 27.2 bits (59), Expect = 2.2
Identities = 6/31 (19%), Positives = 15/31 (48%)
Query: 193 LSPEELEKRIKNLKKKVREIKTLEQKIESGE 223
L+ EE + + L + +++ Q+I +
Sbjct: 48 LTAEEQAQLEEALNVLLEDVRARPQQILESD 78
>d2b2na1 c.37.1.19 (A:26-333) Transcription-repair coupling factor,
TRCF {Escherichia coli [TaxId: 562]}
Length = 308
Score = 27.2 bits (59), Expect = 2.2
Identities = 13/81 (16%), Positives = 21/81 (25%), Gaps = 6/81 (7%)
Query: 124 NPIPGLPPAPSELNFDNLSPEELEKRIKNLKKKVREITVQVTHPVEMPRQLNLKVSLKPP 183
P P F L +L+ E ++P
Sbjct: 234 YWQPLFFSEPLPPLFSYFPANTLLVNTGDLETSAERFQADTLARFENRGVD----PMRPL 289
Query: 184 APSELNFDNLSPEELEKRIKN 204
P + + L +EL +KN
Sbjct: 290 LPPQSLW--LRVDELFSELKN 308
>d1hs7a_ a.47.2.1 (A:) Vam3p N-terminal domain {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 97
Score = 25.7 bits (56), Expect = 2.2
Identities = 12/53 (22%), Positives = 24/53 (45%), Gaps = 9/53 (16%)
Query: 196 EELEKRIKNLKKKVREI------KTLEQKIESGEIKNPEKDQL-EKLQRKPDL 241
E ++ + L+K+ +I K L KIE+ I P + +K++ +
Sbjct: 13 ETFAEQSRVLEKECTKIGSKRDSKELRYKIETELI--PNCTSVRDKIESNILI 63
>d2a1ia1 c.52.1.20 (A:99-227) DNA excision repair protein ERCC-1
{Human (Homo sapiens) [TaxId: 9606]}
Length = 129
Score = 26.2 bits (58), Expect = 2.6
Identities = 13/44 (29%), Positives = 24/44 (54%), Gaps = 4/44 (9%)
Query: 136 LNFDNLSPEELEKRIKNLKK--KVREITVQV--THPVEMPRQLN 175
L + NL P+ + R+++L K +R + VQV P + ++L
Sbjct: 45 LRYHNLHPDYIHGRLQSLGKNFALRVLLVQVDVKDPQQALKELA 88
Score = 24.6 bits (54), Expect = 7.6
Identities = 7/21 (33%), Positives = 13/21 (61%)
Query: 188 LNFDNLSPEELEKRIKNLKKK 208
L + NL P+ + R+++L K
Sbjct: 45 LRYHNLHPDYIHGRLQSLGKN 65
>d2gycw1 a.2.2.1 (W:1-60) Ribosomal protein L29 (L29p) {Escherichia
coli [TaxId: 562]}
Length = 60
Score = 24.9 bits (55), Expect = 2.6
Identities = 8/36 (22%), Positives = 16/36 (44%), Gaps = 1/36 (2%)
Query: 140 NLSPEELEKRIKNLKKKVREITVQ-VTHPVEMPRQL 174
S EEL + NL ++ + +Q + ++ L
Sbjct: 8 EKSVEELNTELLNLLREQFNLRMQAASGQLQQSHLL 43
Score = 24.5 bits (54), Expect = 3.3
Identities = 10/38 (26%), Positives = 16/38 (42%), Gaps = 3/38 (7%)
Query: 192 NLSPEELEKRIKNLKKKVREIKTLEQKIESGEIKNPEK 229
S EEL + NL + E L + SG+++
Sbjct: 8 EKSVEELNTELLNLLR---EQFNLRMQAASGQLQQSHL 42
>d1tf5a3 c.37.1.19 (A:1-226,A:349-395) Translocation ATPase SecA,
nucleotide-binding domains {Bacillus subtilis [TaxId:
1423]}
Length = 273
Score = 26.8 bits (59), Expect = 2.8
Identities = 3/23 (13%), Positives = 10/23 (43%)
Query: 199 EKRIKNLKKKVREIKTLEQKIES 221
++ + +K +I + E+
Sbjct: 13 KRTLNRYEKIANDIDAIRGDYEN 35
Score = 25.7 bits (56), Expect = 6.4
Identities = 7/36 (19%), Positives = 17/36 (47%)
Query: 135 ELNFDNLSPEELEKRIKNLKKKVREITVQVTHPVEM 170
+++NLS + L+ + K+++ + VE
Sbjct: 30 RGDYENLSDDALKHKTIEFKERLEKGATTDDLLVEA 65
>d1nkta3 c.37.1.19 (A:-15-225,A:350-396) Translocation ATPase SecA,
nucleotide-binding domains {Mycobacterium tuberculosis
[TaxId: 1773]}
Length = 288
Score = 26.9 bits (59), Expect = 2.9
Identities = 7/23 (30%), Positives = 11/23 (47%)
Query: 199 EKRIKNLKKKVREIKTLEQKIES 221
+ +K LKK + TL +E
Sbjct: 27 GRMVKRLKKVADYVGTLSDDVEK 49
>d1bf5a1 a.47.1.1 (A:136-316) STAT-1, coiled coil domain {Human
(Homo sapiens) [TaxId: 9606]}
Length = 181
Score = 26.4 bits (58), Expect = 3.2
Identities = 18/66 (27%), Positives = 31/66 (46%), Gaps = 12/66 (18%)
Query: 197 ELEKRIKNLKKKV----REIKTLEQKIESGEIK--------NPEKDQLEKLQRKPDLLSE 244
EL+ +++N+K KV EIK+LE + + K + + Q++ LL +
Sbjct: 6 ELDSKVRNVKDKVMCIEHEIKSLEDLQDEYDFKCKTLQNREHETNGVAKSDQKQEQLLLK 65
Query: 245 IMALKL 250
M L L
Sbjct: 66 KMYLML 71
>d1r73a_ a.2.2.1 (A:) Ribosomal protein L29 (L29p) {Thermotoga
maritima [TaxId: 2336]}
Length = 66
Score = 24.9 bits (55), Expect = 3.3
Identities = 9/38 (23%), Positives = 20/38 (52%), Gaps = 3/38 (7%)
Query: 192 NLSPEELEKRIKNLKKKVREIKTLEQKIESGEIKNPEK 229
N + EEL+ ++ K+ ++ L ++ G++KN
Sbjct: 8 NYTDEELKNLLEEKKR---QLMELRFQLAMGQLKNTSL 42
>d2j0121 a.2.2.1 (2:12-62) Ribosomal protein L29 (L29p) {Thermus
thermophilus [TaxId: 274]}
Length = 51
Score = 24.5 bits (54), Expect = 3.3
Identities = 10/36 (27%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
Query: 140 NLSPEELEKRIKNLKKKVREITVQ-VTHPVEMPRQL 174
LSP ELEK ++ K+++ E+ Q + ++
Sbjct: 4 KLSPVELEKLVREKKRELMELRFQASIGQLSQNHKI 39
>d1acoa2 c.83.1.1 (A:2-528) Aconitase A, N-terminal domain {Cow (Bos
taurus) [TaxId: 9913]}
Length = 527
Score = 26.7 bits (58), Expect = 3.5
Identities = 19/70 (27%), Positives = 35/70 (50%), Gaps = 10/70 (14%)
Query: 177 KVSLKPPAP-SELNFDNLSPEELEKRIKNLKKKVREIKTLEQKIESGEIKNPEKDQLEK- 234
KV++ P + +D L EK I ++K++ TL +KI G + +P ++E+
Sbjct: 3 KVAMSHFEPHEYIRYDLL-----EKNIDIVRKRLNRPLTLSEKIVYGHLDDPANQEIERG 57
Query: 235 ---LQRKPDL 241
L+ +PD
Sbjct: 58 KTYLRLRPDR 67
>d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus
halodurans [TaxId: 86665]}
Length = 176
Score = 26.1 bits (56), Expect = 3.5
Identities = 16/82 (19%), Positives = 23/82 (28%), Gaps = 7/82 (8%)
Query: 129 LPPAPSELNFDNLSPEELEKRIKNLKKKVREITVQVTHPVEMPRQLNLKVSLKPPAPSEL 188
+ + EEL +R KK + + S
Sbjct: 98 VDDVEIRFIILWTNREELLRRDALRKKDEQMGE-------RCLELVEEFESKGIDERYFY 150
Query: 189 NFDNLSPEELEKRIKNLKKKVR 210
N +L P L +KNLK R
Sbjct: 151 NTSHLQPTNLNDIVKNLKTNPR 172
>d2cwla1 a.25.1.3 (A:1-299) Manganese catalase (T-catalase) {Thermus
thermophilus [TaxId: 274]}
Length = 299
Score = 26.4 bits (58), Expect = 3.7
Identities = 10/58 (17%), Positives = 15/58 (25%), Gaps = 3/58 (5%)
Query: 99 ANRQAAQSIPIGLDPSHVKKPVNPQNPIPGLPPAPSELNFD-NLSPEELEKRIKNLKK 155
+ P V P+ +E F P EL + K L +
Sbjct: 244 LGLIWKGASPEDGTEVVVVDGPPTGGPVFDAGHDAAE--FAPEFHPGELYEIAKKLYE 299
>d2zjrv1 a.2.2.1 (V:1-66) Ribosomal protein L29 (L29p) {Deinococcus
radiodurans [TaxId: 1299]}
Length = 66
Score = 24.6 bits (54), Expect = 3.7
Identities = 9/36 (25%), Positives = 16/36 (44%), Gaps = 1/36 (2%)
Query: 140 NLSPEELEKRIKNLKKKVREITVQ-VTHPVEMPRQL 174
NL + K I KK++ E+ Q + P ++
Sbjct: 8 NLQATDFAKEIDARKKELMELRFQAAAGQLAQPHRV 43
Score = 24.6 bits (54), Expect = 4.3
Identities = 10/38 (26%), Positives = 17/38 (44%), Gaps = 3/38 (7%)
Query: 192 NLSPEELEKRIKNLKKKVREIKTLEQKIESGEIKNPEK 229
NL + K I KK E+ L + +G++ P +
Sbjct: 8 NLQATDFAKEIDARKK---ELMELRFQAAAGQLAQPHR 42
>d1e0ta2 c.1.12.1 (A:1-69,A:168-344) Pyruvate kinase, N-terminal
domain {Escherichia coli [TaxId: 562]}
Length = 246
Score = 26.1 bits (57), Expect = 3.9
Identities = 8/26 (30%), Positives = 14/26 (53%)
Query: 188 LNFDNLSPEELEKRIKNLKKKVREIK 213
LNF + E +RI+NL+ + +
Sbjct: 33 LNFSHGDYAEHGQRIQNLRNVMSKTG 58
Score = 25.3 bits (55), Expect = 7.5
Identities = 8/25 (32%), Positives = 14/25 (56%)
Query: 136 LNFDNLSPEELEKRIKNLKKKVREI 160
LNF + E +RI+NL+ + +
Sbjct: 33 LNFSHGDYAEHGQRIQNLRNVMSKT 57
>d1pkla2 c.1.12.1 (A:1-87,A:187-357) Pyruvate kinase, N-terminal
domain {Leishmania mexicana [TaxId: 5665]}
Length = 258
Score = 26.1 bits (57), Expect = 4.1
Identities = 9/62 (14%), Positives = 24/62 (38%), Gaps = 1/62 (1%)
Query: 188 LNFDNLSPEELEKRIKNLKKKVREI-KTLEQKIESGEIKNPEKDQLEKLQRKPDLLSEIM 246
+NF + S E + I N+++ E+ + +++ LQ + +++
Sbjct: 50 MNFSHGSHEYHQTTINNVRQAAAELGVNIAIALDTKGPPAVSAKDRVDLQFGVEQGVDMI 109
Query: 247 AL 248
Sbjct: 110 FA 111
>d1rypd_ d.153.1.4 (D:) Proteasome alpha subunit (non-catalytic)
{Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 241
Score = 26.2 bits (57), Expect = 4.3
Identities = 5/23 (21%), Positives = 14/23 (60%)
Query: 137 NFDNLSPEELEKRIKNLKKKVRE 159
+ LS EE+ + + ++++ +E
Sbjct: 218 DIVALSSEEINQYVTQIEQEKQE 240
Score = 26.2 bits (57), Expect = 4.3
Identities = 5/23 (21%), Positives = 14/23 (60%)
Query: 189 NFDNLSPEELEKRIKNLKKKVRE 211
+ LS EE+ + + ++++ +E
Sbjct: 218 DIVALSSEEINQYVTQIEQEKQE 240
>d1mrza1 b.43.5.1 (A:159-288) Riboflavin kinase domain of
bifunctional FAD synthetase {Thermotoga maritima [TaxId:
2336]}
Length = 130
Score = 25.4 bits (55), Expect = 4.6
Identities = 11/35 (31%), Positives = 17/35 (48%), Gaps = 4/35 (11%)
Query: 187 ELNFDNLSPEELEKRIKNLKKKVREIKTLEQKIES 221
E FD++ EEL+ I K R + ++ I S
Sbjct: 99 EKKFDSI--EELKAAIDQDVKSARNM--IDDIINS 129
Score = 25.4 bits (55), Expect = 5.3
Identities = 9/32 (28%), Positives = 15/32 (46%), Gaps = 2/32 (6%)
Query: 135 ELNFDNLSPEELEKRIKNLKKKVREITVQVTH 166
E FD++ EEL+ I K R + + +
Sbjct: 99 EKKFDSI--EELKAAIDQDVKSARNMIDDIIN 128
>d1nzea_ a.24.18.1 (A:) Oxygen-evolving enhancer protein 3, {Spinach
(Spinacia oleracea) [TaxId: 3562]}
Length = 112
Score = 25.1 bits (55), Expect = 4.7
Identities = 6/26 (23%), Positives = 11/26 (42%)
Query: 193 LSPEELEKRIKNLKKKVREIKTLEQK 218
L P E +R K ++ +K +
Sbjct: 6 LPPTEAAQRAKVSASEILNVKQFIDR 31
>d1irud_ d.153.1.4 (D:) Proteasome alpha subunit (non-catalytic)
{Cow (Bos taurus) [TaxId: 9913]}
Length = 243
Score = 26.1 bits (57), Expect = 4.7
Identities = 8/23 (34%), Positives = 15/23 (65%)
Query: 137 NFDNLSPEELEKRIKNLKKKVRE 159
+ L+PEE+EK + ++K+ E
Sbjct: 215 SLKILNPEEIEKYVAEIEKEKEE 237
Score = 26.1 bits (57), Expect = 4.7
Identities = 8/23 (34%), Positives = 15/23 (65%)
Query: 189 NFDNLSPEELEKRIKNLKKKVRE 211
+ L+PEE+EK + ++K+ E
Sbjct: 215 SLKILNPEEIEKYVAEIEKEKEE 237
>d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium
extorquens [TaxId: 408]}
Length = 323
Score = 26.0 bits (56), Expect = 5.4
Identities = 6/29 (20%), Positives = 12/29 (41%)
Query: 196 EELEKRIKNLKKKVREIKTLEQKIESGEI 224
E L +R+ + + E+ + GE
Sbjct: 282 ERLHQRLVGSAEVRQATAEAERAVAGGEH 310
>d1s4bp_ d.92.1.5 (P:) Neurolysin (endopeptidase 24.16, thimet
oligopeptidase) {Human (Homo sapiens) [TaxId: 9606]}
Length = 654
Score = 26.3 bits (57), Expect = 5.6
Identities = 8/58 (13%), Positives = 27/58 (46%), Gaps = 4/58 (6%)
Query: 192 NLSPEELEKRIKNLKKKVREIKTLEQKIESGEIKNPEKDQ-LEKLQRKPDLLSEIMAL 248
+LS +++E+R + L ++ + + ++ + E ++ + L+ L + +
Sbjct: 4 DLSAQQIEERTRELIEQTKR---VYDQVGTQEFEDVSYESTLKALADVEVTYTVQRNI 58
>d1bg1a1 a.47.1.1 (A:136-321) STAT3b {Mouse (Mus musculus) [TaxId:
10090]}
Length = 186
Score = 25.6 bits (56), Expect = 6.3
Identities = 6/29 (20%), Positives = 18/29 (62%), Gaps = 4/29 (13%)
Query: 197 ELEKRIKNLKKKV----REIKTLEQKIES 221
LE+ +++++K+V +++K +E +
Sbjct: 8 MLEQHLQDVRKRVQDLEQKMKVVENLQDD 36
>d1ez3a_ a.47.2.1 (A:) Syntaxin 1A N-terminal domain {Rat (Rattus
norvegicus) [TaxId: 10116]}
Length = 124
Score = 24.8 bits (54), Expect = 6.3
Identities = 25/114 (21%), Positives = 44/114 (38%), Gaps = 31/114 (27%)
Query: 144 EELEKRIKNLKKKVREITVQVTHPVEMPRQLNLKVSLKPPAPSELNFDNLSPEELEKRIK 203
EE+ I + + V E+ ++ + + P + EELE+ +
Sbjct: 13 EEIRGFIDKIAENVEEV-----------KRKHSAILASPNPDEKTK------EELEELMS 55
Query: 204 NLKKKVREIKT----LEQKIESGEIKNPE-------KDQLEKLQRKPDLLSEIM 246
++KK ++++ +EQ IE E N K Q L RK E+M
Sbjct: 56 DIKKTANKVRSKLKSIEQSIEQEEGLNRSSADLRIRKTQHSTLSRK---FVEVM 106
>d1w25a2 c.23.1.1 (A:141-293) Response regulator PleD, receiver
domain {Caulobacter crescentus [TaxId: 155892]}
Length = 153
Score = 25.0 bits (54), Expect = 7.7
Identities = 7/28 (25%), Positives = 14/28 (50%)
Query: 193 LSPEELEKRIKNLKKKVREIKTLEQKIE 220
+ P+EL R+K ++ R L ++
Sbjct: 116 IDPQELSARVKTQIQRKRYTDYLRNNLD 143
>d2g50a2 c.1.12.1 (A:12-115,A:218-395) Pyruvate kinase, N-terminal
domain {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}
Length = 282
Score = 25.4 bits (55), Expect = 8.7
Identities = 6/27 (22%), Positives = 13/27 (48%)
Query: 188 LNFDNLSPEELEKRIKNLKKKVREIKT 214
+NF + + E + IKN++ +
Sbjct: 62 MNFSHGTHEYHAETIKNVRTATESFAS 88
>d1vqov1 a.2.2.1 (V:1-65) Ribosomal protein L29 (L29p) {Archaeon
Haloarcula marismortui [TaxId: 2238]}
Length = 65
Score = 23.4 bits (51), Expect = 9.0
Identities = 5/17 (29%), Positives = 11/17 (64%)
Query: 140 NLSPEELEKRIKNLKKK 156
+++P E E + +LK +
Sbjct: 10 DMTPAEREAELDDLKTE 26
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.310 0.133 0.376
Gapped
Lambda K H
0.267 0.0623 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,031,197
Number of extensions: 52103
Number of successful extensions: 377
Number of sequences better than 10.0: 1
Number of HSP's gapped: 371
Number of HSP's successfully gapped: 84
Length of query: 267
Length of database: 2,407,596
Length adjustment: 84
Effective length of query: 183
Effective length of database: 1,254,276
Effective search space: 229532508
Effective search space used: 229532508
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 52 (24.0 bits)