BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy12049
(102 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q5UQ13|COLL2_MIMIV Collagen-like protein 2 OS=Acanthamoeba polyphaga mimivirus
GN=MIMI_R196 PE=4 SV=1
Length = 1595
Score = 36.6 bits (83), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 45/111 (40%), Positives = 71/111 (63%), Gaps = 21/111 (18%)
Query: 4 KGRSVHEGERGMKGSDEGKYVMKGSDKGEYVMKSSDEGERGMKG-----SDEGERGMKG- 57
KG ++GE+G +G DEG +KG+ KG+ +K S EG++G+KG D+GE+G KG
Sbjct: 928 KGDKGNKGEKGNRG-DEGDKGIKGN-KGDKGIKGS-EGDKGIKGESGSKGDKGEKGNKGY 984
Query: 58 ----SDEGERGMKGSEEGERGMKGS-----DEGERGTKGS--DEGERGTKG 97
D+G G+KG ++G++G+KG D+G +G KG+ D+G++GT G
Sbjct: 985 KGDKGDKGNLGIKG-DKGDKGIKGVKGTKGDKGTKGVKGTKGDKGDKGTNG 1034
Score = 36.6 bits (83), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 45/113 (39%), Positives = 73/113 (64%), Gaps = 21/113 (18%)
Query: 4 KGRSVHEGERGMKGSDEGKYVMKGSD-----KGEYVMKSSDEGERGMKG-----SDEGER 53
KG EG++G+KG+ +G +KGS+ KGE K D+GE+G KG D+G
Sbjct: 937 KGNRGDEGDKGIKGN-KGDKGIKGSEGDKGIKGESGSK-GDKGEKGNKGYKGDKGDKGNL 994
Query: 54 GMKGSDEGERGMKGS-----EEGERGMKGS--DEGERGTKGSDEGERGTKGSD 99
G+KG D+G++G+KG ++G +G+KG+ D+G++GT G D+G++G KG++
Sbjct: 995 GIKG-DKGDKGIKGVKGTKGDKGTKGVKGTKGDKGDKGTNG-DKGDKGIKGTN 1045
Score = 32.7 bits (73), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 32/78 (41%), Positives = 52/78 (66%), Gaps = 18/78 (23%)
Query: 39 DEGERGMKGSDEGERGMKGS-----------DEGERGMKGS--EEGERGMKG--SDEGER 83
D+G +G KG D+G++G+KG+ D+GE+G KG+ E+GE+G KG +GE+
Sbjct: 810 DKGSKGYKG-DKGDKGIKGNTGSKGDKGSKGDKGEKGSKGNKGEKGEKGFKGEKGSKGEK 868
Query: 84 GTKGS--DEGERGTKGSD 99
G+KG+ D+G++G KG +
Sbjct: 869 GSKGNKGDKGDKGFKGDN 886
Score = 31.2 bits (69), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 43/101 (42%), Positives = 65/101 (64%), Gaps = 14/101 (13%)
Query: 4 KGRSVHEGERGMKGS--DEGKYVMKGSD--KGEYVMKSSDEGERGMKGSDEGERGMKGS- 58
KG +GE+G KG+ D+G KG + KG +K D+G+ G+KG E G+KG
Sbjct: 859 KGEKGSKGEKGSKGNKGDKGDKGFKGDNGIKGNIGVKG-DKGDSGIKG----ENGLKGDV 913
Query: 59 -DEGERGMKGSEEGERGMKGSDEGERGTKGSDEGERGTKGS 98
D+G +G KG+ EG++G KG+ +GE+G +G DEG++G KG+
Sbjct: 914 GDKGIKGDKGN-EGDKGDKGN-KGEKGNRG-DEGDKGIKGN 951
Score = 31.2 bits (69), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 46/74 (62%), Gaps = 17/74 (22%)
Query: 39 DEGERGMKG-----SDEGERGMKGSDEGERGMKGSE--------EGERGMKGSDEGERGT 85
D G++G+KG +D+G++G+KG D+G++G+KG + GE G KG D GE+G
Sbjct: 459 DIGDKGIKGESGANADKGDKGIKG-DKGDKGIKGDDGSKGDKGYNGEIGQKG-DNGEKGD 516
Query: 86 KG--SDEGERGTKG 97
G D GE+G KG
Sbjct: 517 NGEKGDNGEKGDKG 530
Score = 28.9 bits (63), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 37/85 (43%), Positives = 49/85 (57%), Gaps = 16/85 (18%)
Query: 28 SDKGEYVMKSSDEGERGMKGSD--------EGERGMKGSDEGERGMKG--SEEGERGMKG 77
+DKG+ +K D+G++G+KG D GE G KG D GE+G G + GE+G KG
Sbjct: 473 ADKGDKGIKG-DKGDKGIKGDDGSKGDKGYNGEIGQKG-DNGEKGDNGEKGDNGEKGDKG 530
Query: 78 --SDEGERGTKG--SDEGERGTKGS 98
D GE+G G D GE+G KGS
Sbjct: 531 EKGDIGEKGDNGEKGDIGEKGNKGS 555
>sp|Q5UNS9|COLL7_MIMIV Collagen-like protein 7 OS=Acanthamoeba polyphaga mimivirus
GN=MIMI_L669 PE=4 SV=1
Length = 1937
Score = 35.8 bits (81), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 34/65 (52%), Positives = 46/65 (70%), Gaps = 8/65 (12%)
Query: 39 DEGERGMKGS--DEGERGMKGS--DEGERGMKGSEEGERGMKGS--DEGERGTKGSDEGE 92
D+GE+G+KG D GE+G KG D+GE+G KG +G++G+KG D GE+G KG D GE
Sbjct: 364 DKGEKGIKGDKGDIGEKGNKGDIGDKGEKGDKGI-DGDKGIKGDKGDIGEKGDKG-DIGE 421
Query: 93 RGTKG 97
+G KG
Sbjct: 422 KGNKG 426
>sp|Q5UPS7|COLL4_MIMIV Collagen-like protein 4 OS=Acanthamoeba polyphaga mimivirus
GN=MIMI_R240 PE=4 SV=1
Length = 817
Score = 33.1 bits (74), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 42/107 (39%), Positives = 60/107 (56%), Gaps = 25/107 (23%)
Query: 10 EGERGMKGS--DEGKYVMKG--------------SDKGEYVMKSSDEGERGMKGSDEGER 53
+G +G+KGS D+G +KG DKGE S D+G+ G+KG D+G +
Sbjct: 396 KGSKGLKGSKGDKGLVNVKGENGFVGDLGSKGSKGDKGE----SGDKGDIGIKG-DKGAK 450
Query: 54 GMKGSDEGERGMKGSEEGERGMKGSDEGERGTKGSDEGERGTKGSDD 100
G+ G D+G++G KG G G KG D G++G G D G +G KGS +
Sbjct: 451 GVTG-DKGDKGTKGF-IGNVGFKG-DTGDKGIIG-DNGSKGIKGSSN 493
>sp|Q9NR30|DDX21_HUMAN Nucleolar RNA helicase 2 OS=Homo sapiens GN=DDX21 PE=1 SV=5
Length = 783
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 26/47 (55%)
Query: 45 MKGSDEGERGMKGSDEGERGMKGSEEGERGMKGSDEGERGTKGSDEG 91
++G EG G +G EG RG +G +G R +G EG RG +G G
Sbjct: 714 LEGPREGYGGFRGQREGSRGFRGQRDGNRRFRGQREGSRGPRGQRSG 760
Score = 30.8 bits (68), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 25/43 (58%)
Query: 55 MKGSDEGERGMKGSEEGERGMKGSDEGERGTKGSDEGERGTKG 97
++G EG G +G EG RG +G +G R +G EG RG +G
Sbjct: 714 LEGPREGYGGFRGQREGSRGFRGQRDGNRRFRGQREGSRGPRG 756
Score = 29.6 bits (65), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 21/38 (55%)
Query: 44 GMKGSDEGERGMKGSDEGERGMKGSEEGERGMKGSDEG 81
G +G EG RG +G +G R +G EG RG +G G
Sbjct: 723 GFRGQREGSRGFRGQRDGNRRFRGQREGSRGPRGQRSG 760
>sp|Q5VUA4|ZN318_HUMAN Zinc finger protein 318 OS=Homo sapiens GN=ZNF318 PE=1 SV=2
Length = 2279
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 24/55 (43%)
Query: 38 SDEGERGMKGSDEGERGMKGSDEGERGMKGSEEGERGMKGSDEGERGTKGSDEGE 92
S G RG + S RG + S R +GS RG + G G +GS GE
Sbjct: 59 SPSGHRGRRASPSPPRGRRVSPSPPRARRGSPSPPRGRRLFPPGPAGFRGSSRGE 113
Score = 29.6 bits (65), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 22/51 (43%)
Query: 48 SDEGERGMKGSDEGERGMKGSEEGERGMKGSDEGERGTKGSDEGERGTKGS 98
S G RG + S RG + S R +GS RG + G G +GS
Sbjct: 59 SPSGHRGRRASPSPPRGRRVSPSPPRARRGSPSPPRGRRLFPPGPAGFRGS 109
>sp|Q24UI6|IF2_DESHY Translation initiation factor IF-2 OS=Desulfitobacterium hafniense
(strain Y51) GN=infB PE=3 SV=1
Length = 971
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 47/93 (50%), Gaps = 2/93 (2%)
Query: 1 MKGKGRSVHEGERGMKGSDEGKYVMKGSDKGEYVMKSSDEGERGMKGSDEGERGMKGSDE 60
++G+GR +G+R M +G+ M +G+ M +G+R M +G+R M +
Sbjct: 95 VEGEGRP--QGQRPMGDRPQGQRPMGDRPQGQRPMGDRPQGQRPMGDRPQGQRPMGDRPQ 152
Query: 61 GERGMKGSEEGERGMKGSDEGERGTKGSDEGER 93
G+R M +G+R M +G+R +G+R
Sbjct: 153 GQRPMGDRPQGQRPMGDRPQGQRPMGDRPQGQR 185
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 42/87 (48%)
Query: 10 EGERGMKGSDEGKYVMKGSDKGEYVMKSSDEGERGMKGSDEGERGMKGSDEGERGMKGSE 69
+G+R M +G+ M +G+ M +G+R M +G+R M +G+R M
Sbjct: 242 QGQRPMGDRPQGQRPMGDRPQGQRPMGDRPQGQRPMGDRPQGQRPMGDRPQGQRPMGDRP 301
Query: 70 EGERGMKGSDEGERGTKGSDEGERGTK 96
+G+R M +G+R +G+R +
Sbjct: 302 QGQRPMGDRPQGQRPMGDRPQGQRPPQ 328
Score = 31.2 bits (69), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 41/84 (48%)
Query: 10 EGERGMKGSDEGKYVMKGSDKGEYVMKSSDEGERGMKGSDEGERGMKGSDEGERGMKGSE 69
+G+R M +G+ M +G+ M +G+R M +G+R M +G+R M
Sbjct: 112 QGQRPMGDRPQGQRPMGDRPQGQRPMGDRPQGQRPMGDRPQGQRPMGDRPQGQRPMGDRP 171
Query: 70 EGERGMKGSDEGERGTKGSDEGER 93
+G+R M +G+R +G+R
Sbjct: 172 QGQRPMGDRPQGQRPMGDRPQGQR 195
Score = 31.2 bits (69), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 41/84 (48%)
Query: 10 EGERGMKGSDEGKYVMKGSDKGEYVMKSSDEGERGMKGSDEGERGMKGSDEGERGMKGSE 69
+G+R M +G+ M +G+ M +G+R M +G+R M +G+R M
Sbjct: 122 QGQRPMGDRPQGQRPMGDRPQGQRPMGDRPQGQRPMGDRPQGQRPMGDRPQGQRPMGDRP 181
Query: 70 EGERGMKGSDEGERGTKGSDEGER 93
+G+R M +G+R +G+R
Sbjct: 182 QGQRPMGDRPQGQRPMGDRPQGQR 205
Score = 31.2 bits (69), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 41/84 (48%)
Query: 10 EGERGMKGSDEGKYVMKGSDKGEYVMKSSDEGERGMKGSDEGERGMKGSDEGERGMKGSE 69
+G+R M +G+ M +G+ M +G+R M +G+R M +G+R M
Sbjct: 132 QGQRPMGDRPQGQRPMGDRPQGQRPMGDRPQGQRPMGDRPQGQRPMGDRPQGQRPMGDRP 191
Query: 70 EGERGMKGSDEGERGTKGSDEGER 93
+G+R M +G+R +G+R
Sbjct: 192 QGQRPMGDRPQGQRPMGDRPQGQR 215
Score = 31.2 bits (69), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 41/84 (48%)
Query: 10 EGERGMKGSDEGKYVMKGSDKGEYVMKSSDEGERGMKGSDEGERGMKGSDEGERGMKGSE 69
+G+R M +G+ M +G+ M +G+R M +G+R M +G+R M
Sbjct: 142 QGQRPMGDRPQGQRPMGDRPQGQRPMGDRPQGQRPMGDRPQGQRPMGDRPQGQRPMGDRP 201
Query: 70 EGERGMKGSDEGERGTKGSDEGER 93
+G+R M +G+R +G+R
Sbjct: 202 QGQRPMGDRPQGQRPMGDRPQGQR 225
Score = 31.2 bits (69), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 41/84 (48%)
Query: 10 EGERGMKGSDEGKYVMKGSDKGEYVMKSSDEGERGMKGSDEGERGMKGSDEGERGMKGSE 69
+G+R M +G+ M +G+ M +G+R M +G+R M +G+R M
Sbjct: 152 QGQRPMGDRPQGQRPMGDRPQGQRPMGDRPQGQRPMGDRPQGQRPMGDRPQGQRPMGDRP 211
Query: 70 EGERGMKGSDEGERGTKGSDEGER 93
+G+R M +G+R +G+R
Sbjct: 212 QGQRPMGDRPQGQRPMGDRPQGQR 235
Score = 31.2 bits (69), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 41/84 (48%)
Query: 10 EGERGMKGSDEGKYVMKGSDKGEYVMKSSDEGERGMKGSDEGERGMKGSDEGERGMKGSE 69
+G+R M +G+ M +G+ M +G+R M +G+R M +G+R M
Sbjct: 162 QGQRPMGDRPQGQRPMGDRPQGQRPMGDRPQGQRPMGDRPQGQRPMGDRPQGQRPMGDRP 221
Query: 70 EGERGMKGSDEGERGTKGSDEGER 93
+G+R M +G+R +G+R
Sbjct: 222 QGQRPMGDRPQGQRPMGDRPQGQR 245
Score = 31.2 bits (69), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 41/84 (48%)
Query: 10 EGERGMKGSDEGKYVMKGSDKGEYVMKSSDEGERGMKGSDEGERGMKGSDEGERGMKGSE 69
+G+R M +G+ M +G+ M +G+R M +G+R M +G+R M
Sbjct: 172 QGQRPMGDRPQGQRPMGDRPQGQRPMGDRPQGQRPMGDRPQGQRPMGDRPQGQRPMGDRP 231
Query: 70 EGERGMKGSDEGERGTKGSDEGER 93
+G+R M +G+R +G+R
Sbjct: 232 QGQRPMGDRPQGQRPMGDRPQGQR 255
Score = 31.2 bits (69), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 41/84 (48%)
Query: 10 EGERGMKGSDEGKYVMKGSDKGEYVMKSSDEGERGMKGSDEGERGMKGSDEGERGMKGSE 69
+G+R M +G+ M +G+ M +G+R M +G+R M +G+R M
Sbjct: 182 QGQRPMGDRPQGQRPMGDRPQGQRPMGDRPQGQRPMGDRPQGQRPMGDRPQGQRPMGDRP 241
Query: 70 EGERGMKGSDEGERGTKGSDEGER 93
+G+R M +G+R +G+R
Sbjct: 242 QGQRPMGDRPQGQRPMGDRPQGQR 265
Score = 31.2 bits (69), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 41/84 (48%)
Query: 10 EGERGMKGSDEGKYVMKGSDKGEYVMKSSDEGERGMKGSDEGERGMKGSDEGERGMKGSE 69
+G+R M +G+ M +G+ M +G+R M +G+R M +G+R M
Sbjct: 192 QGQRPMGDRPQGQRPMGDRPQGQRPMGDRPQGQRPMGDRPQGQRPMGDRPQGQRPMGDRP 251
Query: 70 EGERGMKGSDEGERGTKGSDEGER 93
+G+R M +G+R +G+R
Sbjct: 252 QGQRPMGDRPQGQRPMGDRPQGQR 275
Score = 31.2 bits (69), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 41/84 (48%)
Query: 10 EGERGMKGSDEGKYVMKGSDKGEYVMKSSDEGERGMKGSDEGERGMKGSDEGERGMKGSE 69
+G+R M +G+ M +G+ M +G+R M +G+R M +G+R M
Sbjct: 202 QGQRPMGDRPQGQRPMGDRPQGQRPMGDRPQGQRPMGDRPQGQRPMGDRPQGQRPMGDRP 261
Query: 70 EGERGMKGSDEGERGTKGSDEGER 93
+G+R M +G+R +G+R
Sbjct: 262 QGQRPMGDRPQGQRPMGDRPQGQR 285
Score = 31.2 bits (69), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 41/84 (48%)
Query: 10 EGERGMKGSDEGKYVMKGSDKGEYVMKSSDEGERGMKGSDEGERGMKGSDEGERGMKGSE 69
+G+R M +G+ M +G+ M +G+R M +G+R M +G+R M
Sbjct: 212 QGQRPMGDRPQGQRPMGDRPQGQRPMGDRPQGQRPMGDRPQGQRPMGDRPQGQRPMGDRP 271
Query: 70 EGERGMKGSDEGERGTKGSDEGER 93
+G+R M +G+R +G+R
Sbjct: 272 QGQRPMGDRPQGQRPMGDRPQGQR 295
Score = 31.2 bits (69), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 41/84 (48%)
Query: 10 EGERGMKGSDEGKYVMKGSDKGEYVMKSSDEGERGMKGSDEGERGMKGSDEGERGMKGSE 69
+G+R M +G+ M +G+ M +G+R M +G+R M +G+R M
Sbjct: 222 QGQRPMGDRPQGQRPMGDRPQGQRPMGDRPQGQRPMGDRPQGQRPMGDRPQGQRPMGDRP 281
Query: 70 EGERGMKGSDEGERGTKGSDEGER 93
+G+R M +G+R +G+R
Sbjct: 282 QGQRPMGDRPQGQRPMGDRPQGQR 305
Score = 31.2 bits (69), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 41/84 (48%)
Query: 10 EGERGMKGSDEGKYVMKGSDKGEYVMKSSDEGERGMKGSDEGERGMKGSDEGERGMKGSE 69
+G+R M +G+ M +G+ M +G+R M +G+R M +G+R M
Sbjct: 232 QGQRPMGDRPQGQRPMGDRPQGQRPMGDRPQGQRPMGDRPQGQRPMGDRPQGQRPMGDRP 291
Query: 70 EGERGMKGSDEGERGTKGSDEGER 93
+G+R M +G+R +G+R
Sbjct: 292 QGQRPMGDRPQGQRPMGDRPQGQR 315
>sp|Q05722|CO9A1_MOUSE Collagen alpha-1(IX) chain OS=Mus musculus GN=Col9a1 PE=2 SV=2
Length = 921
Score = 31.2 bits (69), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 28/73 (38%), Positives = 43/73 (58%), Gaps = 13/73 (17%)
Query: 39 DEGERGMKGS-----DEGERGMKGS--DEGERGMKGS--EEGERGMKGS--DEGERGTKG 87
D+GE G G+ +G RG+ G D+GE+G +G E G +G+ G+ D+G+RG G
Sbjct: 452 DQGELGEVGAQGPPGPQGLRGITGIVGDKGEKGARGFDGEPGPQGIPGAAGDQGQRGPPG 511
Query: 88 S--DEGERGTKGS 98
+G+RG +GS
Sbjct: 512 ETGPKGDRGIQGS 524
>sp|P12111|CO6A3_HUMAN Collagen alpha-3(VI) chain OS=Homo sapiens GN=COL6A3 PE=1 SV=5
Length = 3177
Score = 30.4 bits (67), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 39/99 (39%), Positives = 51/99 (51%), Gaps = 26/99 (26%)
Query: 10 EGERGMKGSDEGKYVMKGS--DKGEYVMKSSDEGERGMKGSD--EGERGMKGS-----DE 60
G+RG+KGS +G +KGE GE G+ G D +G++G+ GS +
Sbjct: 2088 PGQRGVKGS-------RGFPGEKGEV-------GEIGLDGLDGEDGDKGLPGSSGEKGNP 2133
Query: 61 GERGMKGS--EEGERGMKGSDEGERGTKGSDEGERGTKG 97
G RG KG E+GERG G G+ G G D ERG KG
Sbjct: 2134 GRRGDKGPRGEKGERGDVGI-RGDPGNPGQDSQERGPKG 2171
>sp|Q5UPS6|COLL5_MIMIV Collagen-like protein 5 OS=Acanthamoeba polyphaga mimivirus
GN=MIMI_R241 PE=4 SV=1
Length = 812
Score = 30.0 bits (66), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 32/62 (51%), Positives = 45/62 (72%), Gaps = 7/62 (11%)
Query: 41 GERGMKGSDEGERGMKGSD--EGERGMKGSEEGERGMKGSDEGERGTKG--SDEGERGTK 96
GE+G KG D+G+ G+KG D +GE+G KG++ G++G KG D+GE G KG D G++G K
Sbjct: 203 GEKGNKG-DKGDVGVKGDDGTKGEKGEKGTK-GDKGNKG-DKGEDGLKGENGDIGDKGDK 259
Query: 97 GS 98
GS
Sbjct: 260 GS 261
Score = 29.6 bits (65), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 52/74 (70%), Gaps = 8/74 (10%)
Query: 9 HEGERGMKGS--DEGKYVMKGS--DKGEYVMKSSDEGERGMKGSDEGERGMKGSDEGERG 64
+G+ G+KGS D+G +KG DKG+ + + D+G++G+KG D+G+ G+KG D+G++G
Sbjct: 435 SKGDVGLKGSKGDKGDKGIKGDVGDKGDIGI-TGDKGDKGVKG-DKGDIGLKG-DKGDKG 491
Query: 65 MKGSEEGERGMKGS 78
KG ++G +G GS
Sbjct: 492 TKG-DKGSKGDNGS 504
>sp|P20849|CO9A1_HUMAN Collagen alpha-1(IX) chain OS=Homo sapiens GN=COL9A1 PE=1 SV=3
Length = 921
Score = 29.6 bits (65), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 43/73 (58%), Gaps = 13/73 (17%)
Query: 39 DEGERGMKGSD-----EGERGMKGS--DEGERGMKGS--EEGERGMKGS--DEGERGTKG 87
D+GE G G+ +G RG+ G D+GE+G +G E G +G+ G+ D+G+RG G
Sbjct: 452 DQGELGEVGAQGPPGAQGLRGITGIVGDKGEKGARGLDGEPGPQGLPGAPGDQGQRGPPG 511
Query: 88 S--DEGERGTKGS 98
+G+RG +G+
Sbjct: 512 EAGPKGDRGAEGA 524
>sp|Q5UPX3|COLL3_MIMIV Collagen-like protein 3 OS=Acanthamoeba polyphaga mimivirus
GN=MIMI_R239 PE=4 SV=1
Length = 939
Score = 29.3 bits (64), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 31/78 (39%), Positives = 50/78 (64%), Gaps = 19/78 (24%)
Query: 39 DEGERGMKGS--DEGERGMKG--------SDEGERGMKGS--EEGERGMKG-----SDEG 81
++GE+G KG D+G+ G+KG D+G++G KG ++G+ G KG +D+G
Sbjct: 212 NKGEKGSKGDKGDKGDIGLKGESGADADKGDKGDKGSKGDKGDKGDIGPKGESGADADKG 271
Query: 82 ERGTKGS--DEGERGTKG 97
++G KGS D+G++GTKG
Sbjct: 272 DKGDKGSKGDKGDKGTKG 289
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.299 0.129 0.354
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 45,633,608
Number of Sequences: 539616
Number of extensions: 2222389
Number of successful extensions: 7688
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 133
Number of HSP's successfully gapped in prelim test: 354
Number of HSP's that attempted gapping in prelim test: 4564
Number of HSP's gapped (non-prelim): 2055
length of query: 102
length of database: 191,569,459
effective HSP length: 71
effective length of query: 31
effective length of database: 153,256,723
effective search space: 4750958413
effective search space used: 4750958413
T: 11
A: 40
X1: 17 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 44 (21.9 bits)
S2: 55 (25.8 bits)