Query psy12049
Match_columns 102
No_of_seqs 13 out of 15
Neff 2.1
Searched_HMMs 29240
Date Fri Aug 16 17:18:51 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy12049.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/12049hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ejh_E Collagen type-I A1 chai 5.5 3.7E+02 0.013 13.2 2.0 11 91-101 13-23 (23)
2 2epq_A POZ-, at HOOK-, and zin 3.4 3.5E+02 0.012 12.9 0.7 7 7-13 3-9 (45)
3 1qp6_A Protein (alpha2D); de n 3.0 2.1E+02 0.0073 16.5 -0.5 11 22-32 11-21 (35)
4 2ept_A Zinc finger protein 32; 2.9 4.4E+02 0.015 12.1 0.7 7 7-13 3-9 (41)
5 3lfk_A MSCTV, MARR like protei 2.8 6.3E+02 0.021 17.9 1.7 27 17-43 6-32 (129)
6 2ftc_N Mitochondrial ribosomal 2.2 4.8E+02 0.016 17.0 0.4 11 23-33 5-15 (96)
7 3r8s_U 50S ribosomal protein L 2.2 4.9E+02 0.017 17.2 0.4 11 23-33 11-21 (102)
8 3v2d_Y 50S ribosomal protein L 2.0 5.5E+02 0.019 17.2 0.4 11 23-33 14-24 (110)
9 2zjr_R 50S ribosomal protein L 1.9 5.8E+02 0.02 17.1 0.5 11 23-33 23-33 (115)
10 2zjr_Z 50S ribosomal protein L 1.9 6.5E+02 0.022 15.1 0.6 10 27-36 50-59 (60)
No 1
>3ejh_E Collagen type-I A1 chain; fibronectin, protein complex, collagenase site, AC phase, cell adhesion, disease mutation; HET: NAG; 2.10A {Homo sapiens}
Probab=5.49 E-value=3.7e+02 Score=13.16 Aligned_cols=11 Identities=55% Similarity=0.921 Sum_probs=4.8
Q ss_pred cccCCCCCCCC...
Q psy12049 91 GERGTKGSDDY... 101 (102)
Q Consensus 91 g~~g~k~~~~~... 101 (102)
|++|.++..+|
T Consensus 13 G~~G~~G~~G~... 23 (23)
T 3ejh_E 13 GERGFPGLPGYxxx 26 (26)
T ss_pred CCCCCcCCCCC...
Confidence 44444444443
No 2
>2epq_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1
Probab=3.41 E-value=3.5e+02 Score=12.85 Aligned_cols=7 Identities=43% Similarity=0.563 Sum_probs=3.5
Q ss_pred ccccccc
Q psy12049 7 SVHEGER 13 (102)
Q Consensus 7 ~~~~~~~ 13 (102)
++|.+++
T Consensus 3 ~~h~~~k 9 (45)
T 2epq_A 3 SGSSGEK 9 (45)
T ss_dssp CCCSSCC
T ss_pred CCcCCCC
Confidence 4555544
No 3
>1qp6_A Protein (alpha2D); de novo design, protein design, protein folding, bisecting U motif, four-helix bundle, helix-turn-helix, de novo protein; NMR {Synthetic} SCOP: k.16.1.1
Probab=3.04 E-value=2.1e+02 Score=16.46 Aligned_cols=11 Identities=45% Similarity=0.731 Sum_probs=7.1
Q ss_pred ccccccccccc
Q psy12049 22 KYVMKGSDKGE 32 (102)
Q Consensus 22 k~vlkgtrrGk 32 (102)
|++.||.|||+
T Consensus 11 kelwkgprrge 21 (35)
T 1qp6_A 11 KELWKGPRRGE 21 (35)
T ss_dssp HHHHSSSCSHH
T ss_pred HHHhcCCccch
Confidence 35567777775
No 4
>2ept_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=2.86 E-value=4.4e+02 Score=12.13 Aligned_cols=7 Identities=43% Similarity=0.568 Sum_probs=3.1
Q ss_pred ccccccc
Q psy12049 7 SVHEGER 13 (102)
Q Consensus 7 ~~~~~~~ 13 (102)
++|.+++
T Consensus 3 ~~h~~~k 9 (41)
T 2ept_A 3 SGSSGQR 9 (41)
T ss_dssp SSCCCCC
T ss_pred CccCCCC
Confidence 4454443
No 5
>3lfk_A MSCTV, MARR like protein, TVG0766549; multiple antibiotic resistance regulator, transcriptional regulator, winged helix-turn-helix motif; HET: CIT; 1.60A {Thermoplasma volcanium}
Probab=2.80 E-value=6.3e+02 Score=17.92 Aligned_cols=27 Identities=26% Similarity=0.283 Sum_probs=20.3
Q ss_pred ccccccccccccccccccccccccccc
Q psy12049 17 GSDEGKYVMKGSDKGEYVMKSSDEGER 43 (102)
Q Consensus 17 g~~~gk~vlkgtrrGk~~lKgt~egkR 43 (102)
--.+-|.+.|||.--|-++||.+|-.-
T Consensus 6 amaeskvlvkgtpfnkp~ikgklenny 32 (129)
T 3lfk_A 6 AMAESKVLVKGTPFNKPVIKGKLENNY 32 (129)
T ss_dssp SSCCCCEEECCBTTBCCEESSCGGGGG
T ss_pred hhhhcceeeccCcCCchhhccccccCc
Confidence 345667788888888888888887543
No 6
>2ftc_N Mitochondrial ribosomal protein L24; mitochondrial ribosome, large ribosomal subunit, ribosomal R ribosome; 12.10A {Bos taurus} PDB: 3iy9_N
Probab=2.21 E-value=4.8e+02 Score=17.04 Aligned_cols=11 Identities=27% Similarity=0.652 Sum_probs=6.0
Q ss_pred ccccccccccc
Q psy12049 23 YVMKGSDKGEY 33 (102)
Q Consensus 23 ~vlkgtrrGk~ 33 (102)
+||.|.++||+
T Consensus 5 ~Vi~GkdKGk~ 15 (96)
T 2ftc_N 5 EILEGKDAGKQ 15 (96)
T ss_pred EEeEcCCCCcE
Confidence 35556565553
No 7
>3r8s_U 50S ribosomal protein L24; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 2j28_U* 3fik_U 3j19_U 2wwq_U 3oat_U* 3oas_U* 3ofd_U 3ofc_U 3ofr_U* 3ofz_U* 3og0_U 3ofq_U 3r8t_U 3i1n_U 1vs8_U 1vs6_U 1vt2_U 3i1p_U 3i1r_U 3i1t_U ...
Probab=2.21 E-value=4.9e+02 Score=17.20 Aligned_cols=11 Identities=45% Similarity=0.794 Sum_probs=6.5
Q ss_pred ccccccccccc
Q psy12049 23 YVMKGSDKGEY 33 (102)
Q Consensus 23 ~vlkgtrrGk~ 33 (102)
+||.|.++|++
T Consensus 11 ~Vi~GkdKGk~ 21 (102)
T 3r8s_U 11 IVLTGKDKGKR 21 (102)
T ss_dssp EECSSSSTTCE
T ss_pred EEeEcCCCCee
Confidence 45666666654
No 8
>3v2d_Y 50S ribosomal protein L24; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 1vsp_S 2hgj_X 2hgq_X 2hgu_X 1vsa_S 2j03_Y 2jl6_Y 2jl8_Y 2v47_Y 2v49_Y 2wdi_Y 2wdj_Y 2wdl_Y 2wdn_Y 2wh2_Y 2wh4_Y 2wrj_Y 2wrl_Y 2wro_Y 2wrr_Y ...
Probab=1.99 E-value=5.5e+02 Score=17.22 Aligned_cols=11 Identities=36% Similarity=0.480 Sum_probs=6.7
Q ss_pred ccccccccccc
Q psy12049 23 YVMKGSDKGEY 33 (102)
Q Consensus 23 ~vlkgtrrGk~ 33 (102)
+||.|.++|++
T Consensus 14 ~Vi~GkdKGk~ 24 (110)
T 3v2d_Y 14 LVASGKYKGRV 24 (110)
T ss_dssp EECSSTTTTCE
T ss_pred EEeEcCCCCeE
Confidence 45666666654
No 9
>2zjr_R 50S ribosomal protein L24; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: b.34.5.1 PDB: 1nwx_S* 1nwy_S* 1sm1_S* 1xbp_S* 2d3o_S 2zjp_R* 2zjq_R 1nkw_S 3cf5_R* 3dll_R* 3pio_R* 3pip_R* 1pnu_S 1pny_S 1vor_V 1vou_V 1vow_V 1voy_V 1vp0_V
Probab=1.94 E-value=5.8e+02 Score=17.11 Aligned_cols=11 Identities=36% Similarity=0.676 Sum_probs=6.7
Q ss_pred ccccccccccc
Q psy12049 23 YVMKGSDKGEY 33 (102)
Q Consensus 23 ~vlkgtrrGk~ 33 (102)
+||.|.++|++
T Consensus 23 ~Vi~GkdKGk~ 33 (115)
T 2zjr_R 23 IVLSGKHKGQT 33 (115)
T ss_dssp ECCSSSSTTCE
T ss_pred EEeEcCCCCcE
Confidence 45666666664
No 10
>2zjr_Z 50S ribosomal protein L32; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: g.41.8.5 PDB: 1j5a_M* 1jzy_M* 1jzz_M* 1k01_M* 1nkw_Z 1ond_Z* 1sm1_Z* 1yl3_5 2b66_5 2b9n_5 2b9p_5 2zjp_Y* 2zjq_Z 1jzx_M 3cf5_Y* 3dll_Y* 3pio_Z* 3pip_Z* 1nwy_Z* 1nwx_Z* ...
Probab=1.90 E-value=6.5e+02 Score=15.06 Aligned_cols=10 Identities=30% Similarity=0.451 Sum_probs=0.0
Q ss_pred cccccccccc
Q psy12049 27 GSDKGEYVMK 36 (102)
Q Consensus 27 gtrrGk~~lK 36 (102)
|.-+|++|++
T Consensus 50 G~Y~gr~v~~ 59 (60)
T 2zjr_Z 50 GYYDGRQVLA 59 (60)
T ss_dssp CBSSSBCSCC
T ss_pred CcCCCEEeec
Done!