Query psy12049
Match_columns 102
No_of_seqs 13 out of 15
Neff 2.1
Searched_HMMs 13730
Date Fri Aug 16 17:18:59 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy12049.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/12049hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1fnoa3 d.58.19.1 (A:208-320) 3.6 1.3E+02 0.0093 19.0 0.4 9 4-12 11-19 (113)
2 d1k82a2 b.113.1.1 (A:1-128) DN 3.3 1.2E+02 0.0089 18.2 0.1 19 20-38 44-62 (128)
3 d2j0151 g.41.8.5 (5:2-60) Ribo 3.1 1.6E+02 0.012 16.4 0.5 9 27-35 49-57 (59)
4 d2epsa1 g.37.1.1 (A:408-446) P 3.0 1.3E+02 0.0096 15.4 0.0 9 6-14 26-34 (39)
5 d1ee8a2 b.113.1.1 (A:1-121) DN 3.0 1.3E+02 0.0094 17.9 -0.0 19 19-37 39-57 (121)
6 d2qam01 g.41.8.5 (0:1-56) Ribo 3.0 1.7E+02 0.013 16.2 0.5 9 27-35 46-54 (56)
7 d1k3xa2 b.113.1.1 (A:1-124) En 2.9 1.5E+02 0.011 17.5 0.2 19 20-38 40-58 (124)
8 d1wyha2 g.39.1.3 (A:8-34) Four 2.4 2.1E+02 0.016 14.4 0.4 13 21-33 5-17 (27)
9 d2zjrz1 g.41.8.5 (Z:2-59) Ribo 2.4 2.3E+02 0.016 15.8 0.6 9 27-35 49-57 (58)
10 d2gycs1 b.34.5.1 (S:3-101) Rib 2.3 2.2E+02 0.016 17.3 0.4 11 23-33 9-19 (99)
No 1
>d1fnoa3 d.58.19.1 (A:208-320) Peptidase T (tripeptidase) {Salmonella typhimurium [TaxId: 90371]}
Probab=3.55 E-value=1.3e+02 Score=18.97 Aligned_cols=9 Identities=44% Similarity=0.796 Sum_probs=5.8
Q ss_pred Ccccccccc
Q psy12049 4 KGRSVHEGE 12 (102)
Q Consensus 4 ~~~~~~~~~ 12 (102)
+|.|||.|.
T Consensus 11 ~G~svHPG~ 19 (113)
T d1fnoa3 11 VGNNVHPGT 19 (113)
T ss_dssp ECBCCCGGG
T ss_pred EEEEeCCcc
Confidence 467777653
No 2
>d1k82a2 b.113.1.1 (A:1-128) DNA repair protein MutM (Fpg) {Escherichia coli [TaxId: 562]}
Probab=3.31 E-value=1.2e+02 Score=18.17 Aligned_cols=19 Identities=11% Similarity=0.254 Sum_probs=12.6
Q ss_pred ccccccccccccccccccc
Q psy12049 20 EGKYVMKGSDKGEYVMKSS 38 (102)
Q Consensus 20 ~gk~vlkgtrrGk~~lKgt 38 (102)
.|..|..=.|||||++=-.
T Consensus 44 ~g~~i~~v~RrGK~l~~~l 62 (128)
T d1k82a2 44 SDQPVLSVQRRAKYLLLEL 62 (128)
T ss_dssp CSEEBCEEEEETTEEEEEC
T ss_pred hCCceehhhheeeEEEEEc
Confidence 4556667777888876544
No 3
>d2j0151 g.41.8.5 (5:2-60) Ribosomal protein L32p {Thermus thermophilus [TaxId: 274]}
Probab=3.12 E-value=1.6e+02 Score=16.42 Aligned_cols=9 Identities=33% Similarity=0.468 Sum_probs=4.4
Q ss_pred ccccccccc
Q psy12049 27 GSDKGEYVM 35 (102)
Q Consensus 27 gtrrGk~~l 35 (102)
|+-+|++||
T Consensus 49 G~YkGr~Vi 57 (59)
T d2j0151 49 GYYAGRKVL 57 (59)
T ss_dssp CCSSSCCSC
T ss_pred CeECCEEeE
Confidence 444555554
No 4
>d2epsa1 g.37.1.1 (A:408-446) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=3.03 E-value=1.3e+02 Score=15.41 Aligned_cols=9 Identities=44% Similarity=0.715 Sum_probs=6.2
Q ss_pred ccccccccC
Q psy12049 6 RSVHEGERG 14 (102)
Q Consensus 6 ~~~~~~~~~ 14 (102)
|.+|.+|+-
T Consensus 26 r~~Ht~ekp 34 (39)
T d2epsa1 26 KQVHTSERP 34 (39)
T ss_dssp HHTSCCCCC
T ss_pred cCccCCCcC
Confidence 457888864
No 5
>d1ee8a2 b.113.1.1 (A:1-121) DNA repair protein MutM (Fpg) {Thermus thermophilus [TaxId: 274]}
Probab=3.00 E-value=1.3e+02 Score=17.94 Aligned_cols=19 Identities=16% Similarity=0.576 Sum_probs=12.5
Q ss_pred ccccccccccccccccccc
Q psy12049 19 DEGKYVMKGSDKGEYVMKS 37 (102)
Q Consensus 19 ~~gk~vlkgtrrGk~~lKg 37 (102)
-.|+.|..=.||||+++=-
T Consensus 39 l~g~~I~~v~RrGK~l~~~ 57 (121)
T d1ee8a2 39 AEGRRILEVDRRGKFLLFA 57 (121)
T ss_dssp GTTEEEEEEEEETTEEEEE
T ss_pred cCCCEEEEEEeeeEEEEEE
Confidence 3466677777778877543
No 6
>d2qam01 g.41.8.5 (0:1-56) Ribosomal protein L32p {Escherichia coli [TaxId: 562]}
Probab=3.00 E-value=1.7e+02 Score=16.16 Aligned_cols=9 Identities=33% Similarity=0.571 Sum_probs=3.9
Q ss_pred ccccccccc
Q psy12049 27 GSDKGEYVM 35 (102)
Q Consensus 27 gtrrGk~~l 35 (102)
|.-+|++||
T Consensus 46 G~Ykgr~Vi 54 (56)
T d2qam01 46 GYYRGRKVI 54 (56)
T ss_dssp SCCSSSCCS
T ss_pred CCCCCEEee
Confidence 344444443
No 7
>d1k3xa2 b.113.1.1 (A:1-124) Endonuclease VIII {Escherichia coli [TaxId: 562]}
Probab=2.90 E-value=1.5e+02 Score=17.46 Aligned_cols=19 Identities=16% Similarity=0.239 Sum_probs=12.8
Q ss_pred ccccccccccccccccccc
Q psy12049 20 EGKYVMKGSDKGEYVMKSS 38 (102)
Q Consensus 20 ~gk~vlkgtrrGk~~lKgt 38 (102)
.|+.|..=.|+||+.+=-.
T Consensus 40 ~g~~i~~v~RrGK~ll~~l 58 (124)
T d1k3xa2 40 IGQHVTHVETRGKALLTHF 58 (124)
T ss_dssp TTCCEEEEEEETTEEEEEE
T ss_pred CCCEEEEEEecccEEEEEe
Confidence 4666777778888876443
No 8
>d1wyha2 g.39.1.3 (A:8-34) Four and a half LIM domains 3, FHL3 {Human (Homo sapiens) [TaxId: 9606]}
Probab=2.45 E-value=2.1e+02 Score=14.39 Aligned_cols=13 Identities=62% Similarity=0.813 Sum_probs=8.2
Q ss_pred ccccccccccccc
Q psy12049 21 GKYVMKGSDKGEY 33 (102)
Q Consensus 21 gk~vlkgtrrGk~ 33 (102)
.|.||-|||+=+|
T Consensus 5 ~ktiMPGsrKmey 17 (27)
T d1wyha2 5 GETVMPGSRKLEY 17 (27)
T ss_dssp CCBCCSSSCEECS
T ss_pred cceecCCcccccc
Confidence 3667777776443
No 9
>d2zjrz1 g.41.8.5 (Z:2-59) Ribosomal protein L32p {Deinococcus radiodurans [TaxId: 1299]}
Probab=2.41 E-value=2.3e+02 Score=15.77 Aligned_cols=9 Identities=33% Similarity=0.516 Sum_probs=4.5
Q ss_pred ccccccccc
Q psy12049 27 GSDKGEYVM 35 (102)
Q Consensus 27 gtrrGk~~l 35 (102)
|+-+|++||
T Consensus 49 G~YkGr~Vi 57 (58)
T d2zjrz1 49 GYYDGRQVL 57 (58)
T ss_dssp CBSSSBCSC
T ss_pred CcCCCEEee
Confidence 444555554
No 10
>d2gycs1 b.34.5.1 (S:3-101) Ribosomal proteins L24 (L24p) {Escherichia coli [TaxId: 562]}
Probab=2.33 E-value=2.2e+02 Score=17.30 Aligned_cols=11 Identities=45% Similarity=0.794 Sum_probs=5.8
Q ss_pred ccccccccccc
Q psy12049 23 YVMKGSDKGEY 33 (102)
Q Consensus 23 ~vlkgtrrGk~ 33 (102)
+|+-|.++||+
T Consensus 9 ~VisGkdKGK~ 19 (99)
T d2gycs1 9 IVLTGKDKGKR 19 (99)
T ss_dssp ECSSSTTTTCE
T ss_pred EEeeCCCCCCc
Confidence 35555555554
Done!