RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy12049
(102 letters)
>gnl|CDD|233191 TIGR00927, 2A1904, K+-dependent Na+/Ca+ exchanger. [Transport and
binding proteins, Cations and iron carrying compounds].
Length = 1096
Score = 36.5 bits (84), Expect = 9e-04
Identities = 27/97 (27%), Positives = 39/97 (40%), Gaps = 7/97 (7%)
Query: 2 KGKGRSVHEGERGMKGSDEGKYVMKGSDKGEYVMKSSDEGERGMKGSDEGERGMKGSDEG 61
+G+ + EGE G + E + + KGE + ER KG EGE G E
Sbjct: 648 EGERPTEAEGENGEESGGEAEQEGETETKGENESEGEIPAER--KGEQEGE----GEIEA 701
Query: 62 ERGMKGSEEGERGMKGSDEGE-RGTKGSDEGERGTKG 97
+ E ++ E E GT+ E E G +G
Sbjct: 702 KEADHKGETEAEEVEHEGETEAEGTEDEGEIETGEEG 738
Score = 36.1 bits (83), Expect = 0.001
Identities = 25/96 (26%), Positives = 38/96 (39%), Gaps = 4/96 (4%)
Query: 2 KGKGRSVHEGERGMKGSDEGKYVMKGSDKGEYVMKSSDEGERGMKGSDEGERGMKGSDEG 61
+ G + EGE KG +E + + KGE + E + + ++ E
Sbjct: 662 ESGGEAEQEGETETKGENESEGEIPAERKGEQEGEGEIEAKEADHKGETEAEEVEHEGET 721
Query: 62 E-RGMKGSEEGERGMKG---SDEGERGTKGSDEGER 93
E G + E E G +G DEGE +G E E
Sbjct: 722 EAEGTEDEGEIETGEEGEEVEDEGEGEAEGKHEVET 757
Score = 32.7 bits (74), Expect = 0.022
Identities = 22/91 (24%), Positives = 35/91 (38%), Gaps = 2/91 (2%)
Query: 10 EGERGMKGSDEGKYVMKGSDKGEYVMKSSDEGERGMKGSDEGERGMKGSDEGERGMKGSE 69
E E + EG + DE E ++ ++GE MKG + E ++
Sbjct: 748 EAEGKHEVETEGDRKETEHEGETEAEGKEDEDEGEIQAGEDGE--MKGDEGAEGKVEHEG 805
Query: 70 EGERGMKGSDEGERGTKGSDEGERGTKGSDD 100
E E G K EG+ T+ D + G +
Sbjct: 806 ETEAGEKDEHEGQSETQADDTEVKDETGEQE 836
Score = 31.1 bits (70), Expect = 0.065
Identities = 22/89 (24%), Positives = 29/89 (32%), Gaps = 6/89 (6%)
Query: 9 HEGERGMKGSDEGKYVMKGSDKGEYVMKSSDEGERGMKGSDEGERGMKGSDEGERGMKGS 68
EGE E MKG + K EGE DE E + + +
Sbjct: 779 DEGEIQAGEDGE----MKGDE--GAEGKVEHEGETEAGEKDEHEGQSETQADDTEVKDET 832
Query: 69 EEGERGMKGSDEGERGTKGSDEGERGTKG 97
E E + E ++ KG D G G
Sbjct: 833 GEQELNAENQGEAKQDEKGVDGGGGSDGG 861
Score = 30.7 bits (69), Expect = 0.096
Identities = 18/60 (30%), Positives = 25/60 (41%), Gaps = 6/60 (10%)
Query: 40 EGERGMKGSDEGERGMKGSDEGERGMKGSEEGERGMKGSDEGERGTKGSDEGERGTKGSD 99
EGE G + E E+ + +GE +G ER KG EGE G E + +
Sbjct: 656 EGENGEESGGEAEQEGETETKGENESEGEIPAER--KGEQEGE----GEIEAKEADHKGE 709
Score = 30.0 bits (67), Expect = 0.17
Identities = 25/108 (23%), Positives = 42/108 (38%), Gaps = 10/108 (9%)
Query: 1 MKGKGRSVHEGERGMKGSDEGKYVMKGSDKGEYVMKSSDEGERGMKGSDEGERGMKGSDE 60
+GK EG+R + D+ E +++ ++GE MKG + E ++ E
Sbjct: 749 AEGKHEVETEGDRKETEHEGETEAEGKEDEDEGEIQAGEDGE--MKGDEGAEGKVEHEGE 806
Query: 61 GERGMKGSEEGERGMKGSDEGERGTKGS--------DEGERGTKGSDD 100
E G K EG+ + D + G E ++ KG D
Sbjct: 807 TEAGEKDEHEGQSETQADDTEVKDETGEQELNAENQGEAKQDEKGVDG 854
Score = 30.0 bits (67), Expect = 0.21
Identities = 19/88 (21%), Positives = 34/88 (38%), Gaps = 1/88 (1%)
Query: 6 RSVHEGERGMKGSDEGKYVMKGSDKGEYVMKSSDEGE-RGMKGSDEGERGMKGSDEGERG 64
+ H+GE + + + E +++ +EGE +G E E + EG+R
Sbjct: 703 EADHKGETEAEEVEHEGETEAEGTEDEGEIETGEEGEEVEDEGEGEAEGKHEVETEGDRK 762
Query: 65 MKGSEEGERGMKGSDEGERGTKGSDEGE 92
E DE E + ++GE
Sbjct: 763 ETEHEGETEAEGKEDEDEGEIQAGEDGE 790
Score = 29.2 bits (65), Expect = 0.34
Identities = 25/101 (24%), Positives = 39/101 (38%), Gaps = 10/101 (9%)
Query: 2 KGKGRSVHEGERGMKGSDEGKYVMKGSDKGEYVMKSSDEGE-RGMKGSDEGERGMKGS-- 58
+G+ + +GE+ +G E K + ++ E E G + E E G +G
Sbjct: 682 EGEIPAERKGEQEGEGEIEAKEADHKGETEAEEVEHEGETEAEGTEDEGEIETGEEGEEV 741
Query: 59 -DEGERGMKGSEEGER------GMKGSDEGERGTKGSDEGE 92
DEGE +G E E + G + DEGE
Sbjct: 742 EDEGEGEAEGKHEVETEGDRKETEHEGETEAEGKEDEDEGE 782
Score = 28.8 bits (64), Expect = 0.41
Identities = 22/88 (25%), Positives = 33/88 (37%)
Query: 5 GRSVHEGERGMKGSDEGKYVMKGSDKGEYVMKSSDEGERGMKGSDEGERGMKGSDEGERG 64
G+ HEGE DE + + V + E E + E ++ KG D G
Sbjct: 799 GKVEHEGETEAGEKDEHEGQSETQADDTEVKDETGEQELNAENQGEAKQDEKGVDGGGGS 858
Query: 65 MKGSEEGERGMKGSDEGERGTKGSDEGE 92
G E E + +E E + +E E
Sbjct: 859 DGGDSEEEEEEEEEEEEEEEEEEEEEEE 886
>gnl|CDD|217829 pfam03985, Paf1, Paf1. Members of this family are components of
the RNA polymerase II associated Paf1 complex. The Paf1
complex functions during the elongation phase of
transcription in conjunction with Spt4-Spt5 and
Spt16-Pob3i.
Length = 431
Score = 29.3 bits (66), Expect = 0.27
Identities = 13/57 (22%), Positives = 17/57 (29%)
Query: 39 DEGERGMKGSDEGERGMKGSDEGERGMKGSEEGERGMKGSDEGERGTKGSDEGERGT 95
DE E E E G +EG + + GSD + K S
Sbjct: 375 DEEEEQRSDEHEEEEGEDSEEEGSQSREDGSSESSSDVGSDSESKADKESASDSDSE 431
Score = 27.8 bits (62), Expect = 0.87
Identities = 14/51 (27%), Positives = 17/51 (33%)
Query: 49 DEGERGMKGSDEGERGMKGSEEGERGMKGSDEGERGTKGSDEGERGTKGSD 99
DE E E E G EEG + + GSD + K S
Sbjct: 375 DEEEEQRSDEHEEEEGEDSEEEGSQSREDGSSESSSDVGSDSESKADKESA 425
Score = 25.1 bits (55), Expect = 9.0
Identities = 11/42 (26%), Positives = 14/42 (33%)
Query: 59 DEGERGMKGSEEGERGMKGSDEGERGTKGSDEGERGTKGSDD 100
DE E E E G +EG + + GSD
Sbjct: 375 DEEEEQRSDEHEEEEGEDSEEEGSQSREDGSSESSSDVGSDS 416
>gnl|CDD|130212 TIGR01142, purT, phosphoribosylglycinamide formyltransferase 2.
This enzyme is an alternative to PurN (TIGR00639)
[Purines, pyrimidines, nucleosides, and nucleotides,
Purine ribonucleotide biosynthesis].
Length = 380
Score = 27.4 bits (61), Expect = 1.3
Identities = 13/36 (36%), Positives = 21/36 (58%)
Query: 22 KYVMKGSDKGEYVMKSSDEGERGMKGSDEGERGMKG 57
K VM S KG+ V++ ++ E+ + + EG RG G
Sbjct: 142 KPVMSSSGKGQSVVRGPEDIEKAWEYAQEGARGGAG 177
>gnl|CDD|215494 PLN02915, PLN02915, cellulose synthase A [UDP-forming], catalytic
subunit.
Length = 1044
Score = 26.4 bits (58), Expect = 2.9
Identities = 19/73 (26%), Positives = 31/73 (42%), Gaps = 7/73 (9%)
Query: 27 GSDKGE-YVMKSSDEGERGMKGSDEGERGMKGSDEGERGMKGSEEGERGMKGS---DEGE 82
G +G+ K +G R + G G + K G M G + G + + +E E
Sbjct: 605 GGRRGKSKKSKKGKKGRRSLLG---GLKKRKKKGGGGGSMMGKKYGRKKSQAVFDLEEIE 661
Query: 83 RGTKGSDEGERGT 95
G +G DE E+ +
Sbjct: 662 EGLEGYDELEKSS 674
>gnl|CDD|223106 COG0027, PurT, Formate-dependent phosphoribosylglycinamide
formyltransferase (GAR transformylase) [Nucleotide
transport and metabolism].
Length = 394
Score = 25.8 bits (57), Expect = 4.4
Identities = 13/36 (36%), Positives = 22/36 (61%)
Query: 22 KYVMKGSDKGEYVMKSSDEGERGMKGSDEGERGMKG 57
K VM S KG+ V++S ++ E+ + + +G RG G
Sbjct: 155 KPVMSSSGKGQSVVRSPEDVEKAWEYAQQGGRGGSG 190
>gnl|CDD|197278 cd09181, PLDc_FAM83A_N, N-terminal phospholipase D-like domain of
the uncharacterized protein, Family with sequence
similarity 83A. N-terminal phospholipase D (PLD)-like
domain of the uncharacterized protein, Family with
sequence similarity 83A (FAM83A), also known as tumor
antigen BJ-TSA-9. FAM83A or BJ-TSA-9 is a novel
tumor-specific gene highly expressed in human lung
adenocarcinoma. Due to this specific expression
pattern, it may serve as a biomarker for lung cancer,
especially in the early detection of micrometastasis
for lung adenocarcinoma patients. Since the N-terminal
PLD-like domain of FAM83 proteins shows only trace
similarity to the PLD catalytic domain and lacks the
functionally important histidine residue, FAM83
proteins may share a similar three-dimensional fold
with PLD enzymes, but are most unlikely to carry PLD
activity.
Length = 276
Score = 25.5 bits (56), Expect = 4.9
Identities = 10/42 (23%), Positives = 16/42 (38%)
Query: 10 EGERGMKGSDEGKYVMKGSDKGEYVMKSSDEGERGMKGSDEG 51
EGE S E +Y+M+ + + Y + GS
Sbjct: 34 EGEVDFLSSVEKQYIMENAREPSYGSDRTLSTSADQVGSSSP 75
>gnl|CDD|237081 PRK12372, PRK12372, ribonuclease III; Reviewed.
Length = 413
Score = 24.9 bits (54), Expect = 9.3
Identities = 15/70 (21%), Positives = 32/70 (45%), Gaps = 3/70 (4%)
Query: 33 YVMKSSDEGERGMKGSDEGERGMKGSDEGERGMKGSEE-GERGMKGSDE--GERGTKGSD 89
+V ++D+GER K + + K +D + K +E+ E + +D+ G+ S
Sbjct: 306 HVETAADKGERAAKPAAADKAADKPADRPDAAEKAAEKPAEAAPRAADKPAGQAADPASS 365
Query: 90 EGERGTKGSD 99
++ +D
Sbjct: 366 SADKPGASAD 375
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.299 0.129 0.354
Gapped
Lambda K H
0.267 0.0783 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 4,826,011
Number of extensions: 396060
Number of successful extensions: 186
Number of sequences better than 10.0: 1
Number of HSP's gapped: 134
Number of HSP's successfully gapped: 53
Length of query: 102
Length of database: 10,937,602
Length adjustment: 68
Effective length of query: 34
Effective length of database: 7,921,530
Effective search space: 269332020
Effective search space used: 269332020
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 17 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 44 (21.9 bits)
S2: 53 (24.1 bits)