BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy1205
(868 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3LJP|A Chain A, Crystal Structure Of Choline Oxidase V464a Mutant
pdb|3LJP|B Chain B, Crystal Structure Of Choline Oxidase V464a Mutant
Length = 546
Score = 176 bits (446), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 134/482 (27%), Positives = 218/482 (45%), Gaps = 49/482 (10%)
Query: 390 VLGGTSVLNGMMYIRGSRADYDNW-AKAGNPGWSYQDVLPYFLKSEDNQQATMMDQGFHG 448
V+GG S N + R D D W AK G GW+ + P + + E N+ A D HG
Sbjct: 92 VMGGCSSHNSCIAFWAPREDLDEWEAKYGATGWNAEAAWPLYKRLETNEDAGP-DAPHHG 150
Query: 449 VGGYLTVTQFPYHPPLSHSILQGAMELGMPVRDLNGVSHT--GFMIAQTTTR-NGSRLST 505
G + + P P ++L + G+P N + G Q R +G+R S+
Sbjct: 151 DSGPVHLMNVPPKDPTGVALLDACEQAGIPRAKFNTGTTVVNGANFFQINRRADGTRSSS 210
Query: 506 SKAFLRPIISRNNLHILLNTTVTRVIVDPLTKAAIGVEFLTN--GRLERLQAKNEVIVCA 563
S +++ PI+ + N +L +++ D + GV+ + + G RL A+NEV++
Sbjct: 211 SVSYIHPIVEQENFTLLTGLRARQLVFD-ADRRCTGVDIVDSAFGHTHRLTARNEVVLST 269
Query: 564 GAVDSPRILLLSGIGPREELRRLNIAPIHDLPGVGKNLHNHVAHFLNFFIND-TDTTALN 622
GA+D+P++L+LSGIGP L I + D PGVG++L +H + F +
Sbjct: 270 GAIDTPKLLMLSGIGPAAHLAEHGIEVLVDSPGVGEHLQDHPEGVVQFEAKQPMVAESTQ 329
Query: 623 WATAMEYLLFRDGLMSGTGLSEVTGFVHSRLSNPAEDNPDLQIFFSGYLANCARTGQVGE 682
W + DGL D PDL + + G V
Sbjct: 330 WWEIGIFTPTEDGL----------------------DRPDLMMHY----------GSVPF 357
Query: 683 RSDGMNNSTPVPQRTISIFPTVLHPKSRGYLTLKDNNPQTPPLIFARYLTHPD--DVKTL 740
+ + + P + S+ P V H +SRG + L+ + + P++ RY T P+ D++ +
Sbjct: 358 DMNTLRHGYPTTENGFSLTPNVTHARSRGTVRLRSRDFRDKPMVDPRYFTDPEGHDMRVM 417
Query: 741 VDGIKIAIRLTQTAALQKYGFRIDTTPVKGCENLPFGCDAYWECAIRRNTGAENHQAGSC 800
V GI+ A + A+ ++ R + +P G E D + IR+ H G+
Sbjct: 418 VAGIRKAREIAAQPAMAEWTGR-ELSP--GVEAQ---TDEELQDYIRKTHNTAYHPVGTV 471
Query: 801 KMGPASDPSAVVSPELKVHGVDRLRVVDCSIMPAVTSGNTNAPAIMIAEKASDLIKQQWI 860
+MG D + + PEL+V GV LRV D S+MP + N N +MI E+ +DLI+
Sbjct: 472 RMGAVEDEMSPLDPELRVKGVTGLRVADASVMPEHVTVNPNITVMMIGERCADLIRSARA 531
Query: 861 GK 862
G+
Sbjct: 532 GE 533
Score = 43.9 bits (102), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 27/48 (56%)
Query: 283 IRRNTGAENHQAGSCKMGPASDPSAVVSPELKVHGVDRLRVVDCSIMP 330
IR+ H G+ +MG D + + PEL+V GV LRV D S+MP
Sbjct: 457 IRKTHNTAYHPVGTVRMGAVEDEMSPLDPELRVKGVTGLRVADASVMP 504
Score = 34.7 bits (78), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 33/70 (47%), Gaps = 4/70 (5%)
Query: 137 DRDYDFXXXXXXXXXXXXXNRLSEVPNWRVLLIEAGGDE---PTGTQIPSMFLNFLGSSI 193
DR++D+ RLSE P V L+EAG D+ P Q+ ++ L S
Sbjct: 11 DREFDYIVVGGGSAGAAVAARLSEDPAVSVALVEAGPDDRGVPEVLQL-DRWMELLESGY 69
Query: 194 DYGYKTEPED 203
D+ Y EP++
Sbjct: 70 DWDYPIEPQE 79
>pdb|3NNE|A Chain A, Crystal Structure Of Choline Oxidase S101a Mutant
pdb|3NNE|B Chain B, Crystal Structure Of Choline Oxidase S101a Mutant
pdb|3NNE|C Chain C, Crystal Structure Of Choline Oxidase S101a Mutant
pdb|3NNE|D Chain D, Crystal Structure Of Choline Oxidase S101a Mutant
pdb|3NNE|E Chain E, Crystal Structure Of Choline Oxidase S101a Mutant
pdb|3NNE|F Chain F, Crystal Structure Of Choline Oxidase S101a Mutant
pdb|3NNE|G Chain G, Crystal Structure Of Choline Oxidase S101a Mutant
pdb|3NNE|H Chain H, Crystal Structure Of Choline Oxidase S101a Mutant
Length = 546
Score = 176 bits (446), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 134/482 (27%), Positives = 218/482 (45%), Gaps = 49/482 (10%)
Query: 390 VLGGTSVLNGMMYIRGSRADYDNW-AKAGNPGWSYQDVLPYFLKSEDNQQATMMDQGFHG 448
V+GG S N + R D D W AK G GW+ + P + + E N+ A D HG
Sbjct: 92 VMGGCSSHNACIAFWAPREDLDEWEAKYGATGWNAEAAWPLYKRLETNEDAGP-DAPHHG 150
Query: 449 VGGYLTVTQFPYHPPLSHSILQGAMELGMPVRDLNGVSHT--GFMIAQTTTR-NGSRLST 505
G + + P P ++L + G+P N + G Q R +G+R S+
Sbjct: 151 DSGPVHLMNVPPKDPTGVALLDACEQAGIPRAKFNTGTTVVNGANFFQINRRADGTRSSS 210
Query: 506 SKAFLRPIISRNNLHILLNTTVTRVIVDPLTKAAIGVEFLTN--GRLERLQAKNEVIVCA 563
S +++ PI+ + N +L +++ D + GV+ + + G RL A+NEV++
Sbjct: 211 SVSYIHPIVEQENFTLLTGLRARQLVFD-ADRRCTGVDIVDSAFGHTHRLTARNEVVLST 269
Query: 564 GAVDSPRILLLSGIGPREELRRLNIAPIHDLPGVGKNLHNHVAHFLNFFIND-TDTTALN 622
GA+D+P++L+LSGIGP L I + D PGVG++L +H + F +
Sbjct: 270 GAIDTPKLLMLSGIGPAAHLAEHGIEVLVDSPGVGEHLQDHPEGVVQFEAKQPMVAESTQ 329
Query: 623 WATAMEYLLFRDGLMSGTGLSEVTGFVHSRLSNPAEDNPDLQIFFSGYLANCARTGQVGE 682
W + DGL D PDL + + G V
Sbjct: 330 WWEIGIFTPTEDGL----------------------DRPDLMMHY----------GSVPF 357
Query: 683 RSDGMNNSTPVPQRTISIFPTVLHPKSRGYLTLKDNNPQTPPLIFARYLTHPD--DVKTL 740
+ + + P + S+ P V H +SRG + L+ + + P++ RY T P+ D++ +
Sbjct: 358 DMNTLRHGYPTTENGFSLTPNVTHARSRGTVRLRSRDFRDKPMVDPRYFTDPEGHDMRVM 417
Query: 741 VDGIKIAIRLTQTAALQKYGFRIDTTPVKGCENLPFGCDAYWECAIRRNTGAENHQAGSC 800
V GI+ A + A+ ++ R + +P G E D + IR+ H G+
Sbjct: 418 VAGIRKAREIAAQPAMAEWTGR-ELSP--GVEAQ---TDEELQDYIRKTHNTVYHPVGTV 471
Query: 801 KMGPASDPSAVVSPELKVHGVDRLRVVDCSIMPAVTSGNTNAPAIMIAEKASDLIKQQWI 860
+MG D + + PEL+V GV LRV D S+MP + N N +MI E+ +DLI+
Sbjct: 472 RMGAVEDEMSPLDPELRVKGVTGLRVADASVMPEHVTVNPNITVMMIGERCADLIRSARA 531
Query: 861 GK 862
G+
Sbjct: 532 GE 533
Score = 43.1 bits (100), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 27/48 (56%)
Query: 283 IRRNTGAENHQAGSCKMGPASDPSAVVSPELKVHGVDRLRVVDCSIMP 330
IR+ H G+ +MG D + + PEL+V GV LRV D S+MP
Sbjct: 457 IRKTHNTVYHPVGTVRMGAVEDEMSPLDPELRVKGVTGLRVADASVMP 504
Score = 34.7 bits (78), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 33/70 (47%), Gaps = 4/70 (5%)
Query: 137 DRDYDFXXXXXXXXXXXXXNRLSEVPNWRVLLIEAGGDE---PTGTQIPSMFLNFLGSSI 193
DR++D+ RLSE P V L+EAG D+ P Q+ ++ L S
Sbjct: 11 DREFDYIVVGGGSAGAAVAARLSEDPAVSVALVEAGPDDRGVPEVLQL-DRWMELLESGY 69
Query: 194 DYGYKTEPED 203
D+ Y EP++
Sbjct: 70 DWDYPIEPQE 79
>pdb|2JBV|A Chain A, Crystal Structure Of Choline Oxidase Reveals Insights Into
The Catalytic Mechanism
pdb|2JBV|B Chain B, Crystal Structure Of Choline Oxidase Reveals Insights Into
The Catalytic Mechanism
Length = 546
Score = 176 bits (445), Expect = 6e-44, Method: Compositional matrix adjust.
Identities = 134/482 (27%), Positives = 218/482 (45%), Gaps = 49/482 (10%)
Query: 390 VLGGTSVLNGMMYIRGSRADYDNW-AKAGNPGWSYQDVLPYFLKSEDNQQATMMDQGFHG 448
V+GG S N + R D D W AK G GW+ + P + + E N+ A D HG
Sbjct: 92 VMGGCSSHNSCIAFWAPREDLDEWEAKYGATGWNAEAAWPLYKRLETNEDAGP-DAPHHG 150
Query: 449 VGGYLTVTQFPYHPPLSHSILQGAMELGMPVRDLNGVSHT--GFMIAQTTTR-NGSRLST 505
G + + P P ++L + G+P N + G Q R +G+R S+
Sbjct: 151 DSGPVHLMNVPPKDPTGVALLDACEQAGIPRAKFNTGTTVVNGANFFQINRRADGTRSSS 210
Query: 506 SKAFLRPIISRNNLHILLNTTVTRVIVDPLTKAAIGVEFLTN--GRLERLQAKNEVIVCA 563
S +++ PI+ + N +L +++ D + GV+ + + G RL A+NEV++
Sbjct: 211 SVSYIHPIVEQENFTLLTGLRARQLVFD-ADRRCTGVDIVDSAFGHTHRLTARNEVVLST 269
Query: 564 GAVDSPRILLLSGIGPREELRRLNIAPIHDLPGVGKNLHNHVAHFLNFFIND-TDTTALN 622
GA+D+P++L+LSGIGP L I + D PGVG++L +H + F +
Sbjct: 270 GAIDTPKLLMLSGIGPAAHLAEHGIEVLVDSPGVGEHLQDHPEGVVQFEAKQPMVAESTQ 329
Query: 623 WATAMEYLLFRDGLMSGTGLSEVTGFVHSRLSNPAEDNPDLQIFFSGYLANCARTGQVGE 682
W + DGL D PDL + + G V
Sbjct: 330 WWEIGIFTPTEDGL----------------------DRPDLMMHY----------GSVPF 357
Query: 683 RSDGMNNSTPVPQRTISIFPTVLHPKSRGYLTLKDNNPQTPPLIFARYLTHPD--DVKTL 740
+ + + P + S+ P V H +SRG + L+ + + P++ RY T P+ D++ +
Sbjct: 358 DMNTLRHGYPTTENGFSLTPNVTHARSRGTVRLRSRDFRDKPMVDPRYFTDPEGHDMRVM 417
Query: 741 VDGIKIAIRLTQTAALQKYGFRIDTTPVKGCENLPFGCDAYWECAIRRNTGAENHQAGSC 800
V GI+ A + A+ ++ R + +P G E D + IR+ H G+
Sbjct: 418 VAGIRKAREIAAQPAMAEWTGR-ELSP--GVEAQ---TDEELQDYIRKTHNTVYHPVGTV 471
Query: 801 KMGPASDPSAVVSPELKVHGVDRLRVVDCSIMPAVTSGNTNAPAIMIAEKASDLIKQQWI 860
+MG D + + PEL+V GV LRV D S+MP + N N +MI E+ +DLI+
Sbjct: 472 RMGAVEDEMSPLDPELRVKGVTGLRVADASVMPEHVTVNPNITVMMIGERCADLIRSARA 531
Query: 861 GK 862
G+
Sbjct: 532 GE 533
Score = 43.1 bits (100), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 27/48 (56%)
Query: 283 IRRNTGAENHQAGSCKMGPASDPSAVVSPELKVHGVDRLRVVDCSIMP 330
IR+ H G+ +MG D + + PEL+V GV LRV D S+MP
Sbjct: 457 IRKTHNTVYHPVGTVRMGAVEDEMSPLDPELRVKGVTGLRVADASVMP 504
Score = 34.7 bits (78), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 33/70 (47%), Gaps = 4/70 (5%)
Query: 137 DRDYDFXXXXXXXXXXXXXNRLSEVPNWRVLLIEAGGDE---PTGTQIPSMFLNFLGSSI 193
DR++D+ RLSE P V L+EAG D+ P Q+ ++ L S
Sbjct: 11 DREFDYIVVGGGSAGAAVAARLSEDPAVSVALVEAGPDDRGVPEVLQL-DRWMELLESGY 69
Query: 194 DYGYKTEPED 203
D+ Y EP++
Sbjct: 70 DWDYPIEPQE 79
>pdb|3FIM|B Chain B, Crystal Structure Of Aryl-Alcohol-Oxidase From Pleurotus
Eryingii
Length = 566
Score = 160 bits (405), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 132/487 (27%), Positives = 223/487 (45%), Gaps = 26/487 (5%)
Query: 390 VLGGTSVLNGMMYIRGSRADYDNWAKA-GNPGWSYQDVLPYFLKSE------DNQQAT-M 441
+LGG+S ++ M+ +RGS D+D +A G+ GW++ ++ + K+E DN +
Sbjct: 83 MLGGSSSVHYMVMMRGSTEDFDRYAAVTGDEGWNWDNIQQFVRKNEMVVPPADNHNTSGE 142
Query: 442 MDQGFHGVGGYLTVTQFPYHPPLSHSILQGAMELGMPVR---DLNGVSHTGFMIAQTTTR 498
HG G ++++ + PL +L E D+ G + +
Sbjct: 143 FIPAVHGTNGSVSISLPGFPTPLDDRVLATTQEQSEEFFFNPDMGTGHPLGISWSIASVG 202
Query: 499 NGSRLSTSKAFLRPIISRNNLHILLNTTVTRVIVDPLTKAAIGVEFLTNGRLE-----RL 553
NG R S+S A+LRP SR NL +L+N VT+++ T + E +
Sbjct: 203 NGQRSSSSTAYLRPAQSRPNLSVLINAQVTKLVNSGTTNGLPAFRCVEYAEQEGAPTTTV 262
Query: 554 QAKNEVIVCAGAVDSPRILLLSGIGPREELRRLNIAPIHDLPGVGKNLHNHVAHFLNFFI 613
AK EV++ AG+V +P +L LSGIG +L + I I + P VG+NL +H+ FF+
Sbjct: 263 CAKKEVVLSAGSVGTPILLQLSGIGDENDLSSVGIDTIVNNPSVGRNLSDHLLLPAAFFV 322
Query: 614 NDTDTTALNWATAMEYLLFRDGLMSGTGLSEVTGFVHSRLS--NPAEDNPDLQIFFSGYL 671
N T + + E+ + D + T +T + + L+ ++ Q F
Sbjct: 323 NSNQTFDNIFRDSSEFNVDLD-QWTNTRTGPLTALIANHLAWLRLPSNSSIFQTFPDPAA 381
Query: 672 ANCARTGQVGERSDGMNNSTPVPQ--RTISIFPTVLHPKSRGYLTLKDNNPQTPPLIFAR 729
+ + + + + P P +S+ ++ P +RG + L +NP PLI +
Sbjct: 382 GPNSAHWETIFSNQWFHPAIPRPDTGSFMSVTNALISPVARGDIKLATSNPFDKPLINPQ 441
Query: 730 YLTHPDDVKTLVDGIKIAIRLTQTAALQKYGFRIDTTPVKGCENLPFGCDAYWECAIRRN 789
YL+ D+ T++ +K +R A + R ++ + DA E IR N
Sbjct: 442 YLSTEFDIFTMIQAVKSNLRFLSGQAWADFVIRPFDPRLRDPTD-----DAAIESYIRDN 496
Query: 790 TGAENHQAGSCKMGPASDPSAVVSPELKVHGVDRLRVVDCSIMPAVTSGNTNAPAIMIAE 849
H G+ M P VV P+LKV GVD LR+VD SI+P + +T P ++ +
Sbjct: 497 ANTIFHPVGTASMSPRGASWGVVDPDLKVKGVDGLRIVDGSILPFAPNAHTQGPIYLVGK 556
Query: 850 KASDLIK 856
+ +DLIK
Sbjct: 557 QGADLIK 563
Score = 49.3 bits (116), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 33/82 (40%), Positives = 40/82 (48%), Gaps = 9/82 (10%)
Query: 280 KCAIRRNTGAENHQAGSCKMGPASDPSAVVSPELKVHGVDRLRVVDCSIMP----AVTSG 335
+ IR N H G+ M P VV P+LKV GVD LR+VD SI+P A T G
Sbjct: 490 ESYIRDNANTIFHPVGTASMSPRGASWGVVDPDLKVKGVDGLRIVDGSILPFAPNAHTQG 549
Query: 336 SAPLGGIQALRITRQDLVRWDQ 357
L G Q DL++ DQ
Sbjct: 550 PIYLVGKQG-----ADLIKADQ 566
>pdb|3T37|A Chain A, Crystal Structure Of Pyridoxine 4-Oxidase From Mesorbium
Loti
Length = 526
Score = 123 bits (308), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 123/476 (25%), Positives = 207/476 (43%), Gaps = 73/476 (15%)
Query: 390 VLGGTSVLNGMMYIRGSRADYDNWAKA-GNPGWSYQDVLPYFLKSEDNQQATMMDQGFHG 448
++GG+S L+ M Y+RG +D+ W A G+ W + ++LP F ED+
Sbjct: 96 LIGGSSCLHAMGYMRGHPSDFQAWVDASGDRRWGWDELLPVFQAIEDHPLGGDGIH---- 151
Query: 449 VGGYLTVTQFPYH------PPLSHSILQGAMELGMPVRDLNGVSHTGFMIAQT----TTR 498
P H PL+ + ++ LG+P L G ++G MI T R
Sbjct: 152 ----GKGGPLPIHLPADEVSPLARAFIEAGASLGLP--RLEG-HNSGEMIGVTPNSLNIR 204
Query: 499 NGSRLSTSKAFL-RPIISRNNLHILLNTTVTRVIVDPLTKAAIGVEFLTNGRLERLQAKN 557
+G R++ + A+L + + R NL IL + V R+ ++ ++ V G E +
Sbjct: 205 DGRRVTAADAWLTKAVRGRKNLTILTGSRVRRLKLEGNQVRSLEV-VGRQGSAEVF--AD 261
Query: 558 EVIVCAGAVDSPRILLLSGIGPREELRRLNIAPIHDLPGVGKNLHNHVAHFLNFFINDTD 617
++++CAGA++SP +L+ SGIGP + L + + D+P +G+NL +H+ N +
Sbjct: 262 QIVLCAGALESPALLMRSGIGPHDVLDAAGVGCLIDMPDIGRNLQDHLLGAGNLYAARKP 321
Query: 618 T--TALNWATAMEYLLFRDGLMSGTGLSEVTGFVHSRLSNPAEDNPDLQIFFSGYLANCA 675
+ L + +M Y+ R + G E+ + C
Sbjct: 322 VPPSRLQHSESMAYM--RADSFTAAGQPEI-------------------------VVGCG 354
Query: 676 RTGQVGERSDGMNNSTPVPQRTISIFPTVLHPKSRGYLTLKDNNPQTPPLIFARYLTHPD 735
V E + P S+ + HP SRG + + + P + R + P
Sbjct: 355 VAPIVSE-----SFPAPAAGSAYSLLFGITHPTSRGSVRI------SGPELGDRLIIDPA 403
Query: 736 DVKTLVDGIKIAIRLTQTAALQKYGFRIDTTPVKGCENLPFGCDAYWECA--IRRNTGAE 793
++T D + L A + G R + + E LP ++ E I R+
Sbjct: 404 YLQTGRDRERFRRALE---ASRTIGHRDELAGWRERELLPGTPNSAAEMDDFIARSVITH 460
Query: 794 NHQAGSCKMGPASDPSAVVSPELKVHGVDRLRVVDCSIMPAVTSGNTNAPAIMIAE 849
+H G+C+MG DP AVV L++ +D L VVD SIMP +T+G +A + IAE
Sbjct: 461 HHPCGTCRMG--KDPDAVVDANLRLKALDNLFVVDASIMPNLTAGPIHAAVLAIAE 514
Score = 46.6 bits (109), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 24/53 (45%), Positives = 33/53 (62%), Gaps = 2/53 (3%)
Query: 283 IRRNTGAENHQAGSCKMGPASDPSAVVSPELKVHGVDRLRVVDCSIMPAVTSG 335
I R+ +H G+C+MG DP AVV L++ +D L VVD SIMP +T+G
Sbjct: 453 IARSVITHHHPCGTCRMG--KDPDAVVDANLRLKALDNLFVVDASIMPNLTAG 503
Score = 43.5 bits (101), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 29/67 (43%), Positives = 38/67 (56%), Gaps = 7/67 (10%)
Query: 157 RLSEVPNWRVLLIEAGGDEPTGTQI--PSMFLNFLGSSIDYGYKTEPEDMACLNNEERRC 214
RLSE P+ RVLLIEA G+EPT I P+ + G S D+ Y+TE A R
Sbjct: 35 RLSEDPDSRVLLIEA-GEEPTDPDIWNPAAWPALQGRSYDWDYRTE----AQAGTAGRAH 89
Query: 215 NWPRGKV 221
+W RG++
Sbjct: 90 HWARGRL 96
Score = 37.4 bits (85), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 25/61 (40%), Positives = 33/61 (54%), Gaps = 7/61 (11%)
Query: 222 PNWRVLLIEAGGDEPTGTQI--PSMFLNFLGSSIDYGYKTEPEDMACLNNEERRCNWPRG 279
P+ RVLLIEA G+EPT I P+ + G S D+ Y+TE A R +W RG
Sbjct: 40 PDSRVLLIEA-GEEPTDPDIWNPAAWPALQGRSYDWDYRTE----AQAGTAGRAHHWARG 94
Query: 280 K 280
+
Sbjct: 95 R 95
>pdb|1CF3|A Chain A, Glucose Oxidase From Apergillus Niger
pdb|1GAL|A Chain A, Crystal Structure Of Glucose Oxidase From Aspergillus
Niger: Refined At 2.3 Angstroms Resolution
pdb|3QVP|A Chain A, Crystal Structure Of Glucose Oxidase For Space Group C2221
At 1.2 A Resolution
pdb|3QVR|A Chain A, Crystal Structure Of Glucose Oxidase For Space Group P3121
At 1.3 A Resolution
Length = 583
Score = 118 bits (296), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 132/501 (26%), Positives = 212/501 (42%), Gaps = 53/501 (10%)
Query: 391 LGGTSVLNGMMYIRGSRADYDNWAKA-GNPGWSYQDVLPYFLKSED----NQQATMMDQG 445
LGG++++NG + R +A D+W GN GW++ +V Y L++E N +
Sbjct: 100 LGGSTLVNGGTWTRPHKAQVDSWETVFGNEGWNWDNVAAYSLQAERARAPNAKQIAAGHY 159
Query: 446 F----HGVGGYLTVTQFPY-----HPPLSHSILQGAMELGMPVR------DLNGVSHTGF 490
F HGV G TV P + P+ +++ + G+P + D +GVS
Sbjct: 160 FNASCHGVNG--TVHAGPRDTGDDYSPIVKALMSAVEDRGVPTKKDFGCGDPHGVS---- 213
Query: 491 MIAQTTTRNGSRLSTSKAFLRPIISRNNLHILLNTTVTRVIV--DPLTKAAIGVEFLTN- 547
M T + R ++ +L P R NL +L V +V++ + T A+GVEF T+
Sbjct: 214 MFPNTLHEDQVRSDAAREWLLPNYQRPNLQVLTGQYVGKVLLSQNGTTPRAVGVEFGTHK 273
Query: 548 GRLERLQAKNEVIVCAGAVDSPRILLLSGIGPREELRRLNIAPIHDLPGVGKNLHNHVAH 607
G + AK+EV++ AG+ SP IL SGIG + L L I + DLP VG NL +
Sbjct: 274 GNTHNVYAKHEVLLAAGSAVSPTILEYSGIGMKSILEPLGIDTVVDLP-VGLNLQDQTTA 332
Query: 608 FLNFFINDTDTTALNWATAMEYLLFRDGLMSGTGLSEVTGFVHSRLSNPAEDNPDLQIFF 667
+ I + A + F + + + H L+ E + +
Sbjct: 333 TVRSRIT---SAGAGQGQAAWFATFNE------TFGDYSEKAHELLNTKLEQWAEEAVAR 383
Query: 668 SGYLANCARTGQVGERSDGMNNSTPVPQRTISIFPTV-------LHPKSRGYLTLKDNNP 720
G+ A Q D + N V L P +RGY+ + D +P
Sbjct: 384 GGFHNTTALLIQYENYRDWIVNHNVAYSELFLDTAGVASFDVWDLLPFTRGYVHILDKDP 443
Query: 721 QTPPLIFA-RYLTHPDDVKTLVDGIKIAIRLTQTAALQKYGFRIDTTPVKGCENLPFGCD 779
+ +Y + D+ ++A ++ + A+Q Y F +T P +NL + D
Sbjct: 444 YLHHFAYDPQYFLNELDLLGQAAATQLARNISNSGAMQTY-FAGETIP---GDNLAYDAD 499
Query: 780 -AYWECAIRRNTGAENHQAGSCKMGPASDPSAVVSPELKVHGVDRLRVVDCSIMPAVTSG 838
+ W I + H G+C M P + VV +V+GV LRV+D SI P S
Sbjct: 500 LSAWTEYIPYHFRPNYHGVGTCSMMP-KEMGGVVDNAARVYGVQGLRVIDGSIPPTQMSS 558
Query: 839 NTNAPAIMIAEKASDLIKQQW 859
+ +A K SD I + +
Sbjct: 559 HVMTVFYAMALKISDAILEDY 579
Score = 32.7 bits (73), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
Query: 292 HQAGSCKMGPASDPSAVVSPELKVHGVDRLRVVDCSIMPAVTS 334
H G+C M P + VV +V+GV LRV+D SI P S
Sbjct: 516 HGVGTCSMMP-KEMGGVVDNAARVYGVQGLRVIDGSIPPTQMS 557
>pdb|3Q9T|A Chain A, Crystal Structure Analysis Of Formate Oxidase
pdb|3Q9T|B Chain B, Crystal Structure Analysis Of Formate Oxidase
pdb|3Q9T|C Chain C, Crystal Structure Analysis Of Formate Oxidase
Length = 577
Score = 116 bits (291), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 123/503 (24%), Positives = 212/503 (42%), Gaps = 55/503 (10%)
Query: 391 LGGTSVLNGMMYIRGSRADYDNWAKAGNPGWSYQDVLPYFLKS---EDNQQATMMDQGFH 447
LGG+S LN ++ G +A +D W + G W++ ++PY KS D+ + +
Sbjct: 90 LGGSSSLNYFTWVPGHKATFDQWEEFGGKEWTWDPLVPYLRKSATYHDDPRLYSPELEKI 149
Query: 448 GVGGYLTVTQ---FPYHPPLSHSILQGAMELGMP-VRDLNGVSHTGFMIAQTTTRNGSRL 503
G GG + ++ P ++ + +G P + ++ G T G R
Sbjct: 150 GGGGPIPISHAELIDEMAPFRENLTKAWKSMGQPLIENIYDGEMDGLTHCCDTIYRGQR- 208
Query: 504 STSKAFLRPIISRNNLHILLNTTVTRVIVDPLTKAAIGVEFLTN-GRLERLQAKNEVIVC 562
S +FL + ++ N+ I+ R+I++ + GV +T G A EVI+
Sbjct: 209 --SGSFLF-VKNKPNITIVPEVHSKRLIINEADRTCKGVTVVTAAGNELNFFADREVILS 265
Query: 563 AGAVDSPRILLLSGIGPREELRRLNIAPIHDLPGVGKNLHNHVAHFLNFFINDTDTTALN 622
G ++P++L+LSGIGP EL R I I D VG+NL +H + F + D ++
Sbjct: 266 QGVFETPKLLMLSGIGPTRELSRHGINTIVDSRHVGQNLMDHPG--VPFVLRVKDGFGMD 323
Query: 623 WATAMEYLLFRDGLMS----------GTGLSEVTGF--VHSRLSNPAEDNPDLQIFFSGY 670
+ + RD ++S G+GL E+ GF + L AE +
Sbjct: 324 -DVLLRHGPKRDAVVSAYNKNRSGPVGSGLLELVGFPRIDKYLEKDAE-------YRKAK 375
Query: 671 LANCART-----GQVGERSDGM---------NNSTPVPQRTISIFPTVLHPKSR-GYLTL 715
AN + GQ D + + TP +++ ++ P S G +TL
Sbjct: 376 AANGGKDPFSPLGQPHFELDFVCMFGTAFQWHFPTPKTGDHLTVVVDLVRPISDPGEVTL 435
Query: 716 KDNNPQTPPLIFARYLTHPDDVKTLVDGIKIAIRLTQTAALQKYGFRIDTTPVKGCENLP 775
+P P I + + D+ + +GI+ + L + GF+ D + +P
Sbjct: 436 NSADPFQQPNINLNFFANDLDIIAMREGIRFSYDLL----FKGEGFK-DLVESEYPWEMP 490
Query: 776 FGCDAYWECAIRRNTGAENHQAGSCKMGPASDPSAVVSPELKVHGVDRLRVVDCSIMPAV 835
D A+ H G+ ++ D VV P+LKVHG+ +LRV D S++P +
Sbjct: 491 LDSDKEMHRAVLDRCQTAFHPTGTARLSKNID-QGVVDPKLKVHGIKKLRVADASVIPII 549
Query: 836 TSGNTNAPAIMIAEKASDLIKQQ 858
+ EK +D+IK +
Sbjct: 550 PDCRIQNSVYAVGEKCADMIKAE 572
Score = 40.0 bits (92), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 26/41 (63%), Gaps = 1/41 (2%)
Query: 292 HQAGSCKMGPASDPSAVVSPELKVHGVDRLRVVDCSIMPAV 332
H G+ ++ D VV P+LKVHG+ +LRV D S++P +
Sbjct: 510 HPTGTARLSKNID-QGVVDPKLKVHGIKKLRVADASVIPII 549
Score = 33.5 bits (75), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 36/89 (40%), Gaps = 12/89 (13%)
Query: 140 YDFXXXXXXXXXXXXXNRLSEVPNWRVLLIEAGGDEPTG---TQIPSMFLNFLGSSIDYG 196
+DF RL+E PN VL++EAG P PS ++ S D+
Sbjct: 7 FDFVIVGGGTAGNTVAGRLAENPNVTVLIVEAGIGNPEDIPEITTPSSAMDLRNSKYDWA 66
Query: 197 YKTEPEDMACLNNEERRCNWPRGKVPNWR 225
YKT RR ++ R + PN R
Sbjct: 67 YKT---------TMVRRDDYERIEKPNTR 86
>pdb|1GPE|A Chain A, Glucose Oxidase From Penicillium Amagasakiense
pdb|1GPE|B Chain B, Glucose Oxidase From Penicillium Amagasakiense
Length = 587
Score = 95.1 bits (235), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 126/503 (25%), Positives = 210/503 (41%), Gaps = 65/503 (12%)
Query: 391 LGGTSVLNGMMYIRGSRADYDNWAKA-GNPGWSYQDVLPYFLKSEDNQQ--ATMMDQGF- 446
LGG++++NG + R + D+W K G GW++ ++ Y K+E + A + G
Sbjct: 104 LGGSTLINGDSWTRPDKVQIDSWEKVFGMEGWNWDNMFEYMKKAEAARTPTAAQLAAGHS 163
Query: 447 -----HGVGGYLTV----TQFPYHPPLSHSILQGAMELGMPVRD--LNGVSHTGFMIAQT 495
HG G + P+ P+ +++ LG+PV+ L G MI
Sbjct: 164 FNATCHGTNGTVQSGARDNGQPW-SPIMKALMNTVSALGVPVQQDFLCGHPRGVSMIMNN 222
Query: 496 TTRNGSRLSTSKAFLRPIISRNNLHILLNTTVTRVIVDPLTKA--AIGVEFLTNGRLE-R 552
N R+ ++A+L P R+NL IL V +V+ A+GV F TN +
Sbjct: 223 LDENQVRVDAARAWLLPNYQRSNLEILTGQMVGKVLFKQTASGPQAVGVNFGTNKAVNFD 282
Query: 553 LQAKNEVIVCAGAVDSPRILLLSGIGPREELRRLNIAPIHDLPGVGKNLHNHVAHFLN-- 610
+ AK+EV++ AG+ SP IL SGIG + L + N+ + DLP VG N+ + ++
Sbjct: 283 VFAKHEVLLAAGSAISPLILEYSGIGLKSVLDQANVTQLLDLP-VGINMQDQTTTTVSSR 341
Query: 611 ------------FFINDTDTTALNWATAMEYLL------FRDGLMSGTGLSEVTGFVHSR 652
FF N T+T ++A LL + + ++ G VT + +
Sbjct: 342 ASSAGAGQGQAVFFANFTETFG-DYAPQARDLLNTKLDQWAEETVARGGFHNVTA-LKVQ 399
Query: 653 LSNPAEDNPDLQIFFSGYLANCARTGQVGERSDGMNNSTPVPQRTISIFPTVLHPKSRGY 712
N D + F+ + G+ + + + P + ++ I S Y
Sbjct: 400 YENYRNWLLDEDVAFAELFMDTE-----GKINFDLWDLIPFTRGSVHIL------SSDPY 448
Query: 713 LTLKDNNPQTPPLIFARYLTHPDDVKTLVDGIKIAIRLTQTAALQKYGFRIDTTPVKGCE 772
L N+P ++ + D+ K+A LT A+++Y F +T P G
Sbjct: 449 LWQFANDP--------KFFLNEFDLLGQAAASKLARDLTSQGAMKEY-FAGETLP--GYN 497
Query: 773 NLPFGCDAYWECAIRRNTGAENHQAGSCKMGPASDPSAVVSPELKVHGVDRLRVVDCSIM 832
+ + W + +N H SC M + + VV KV+G LRV+D SI
Sbjct: 498 LVQNATLSQWSDYVLQNFRPNWHAVSSCSM-MSRELGGVVDATAKVYGTQGLRVIDGSIP 556
Query: 833 PAVTSGNTNAPAIMIAEKASDLI 855
P S + +A K +D I
Sbjct: 557 PTQVSSHVMTIFYGMALKVADAI 579
Score = 29.6 bits (65), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
Query: 292 HQAGSCKMGPASDPSAVVSPELKVHGVDRLRVVDCSIMPAVTS 334
H SC M + + VV KV+G LRV+D SI P S
Sbjct: 520 HAVSSCSM-MSRELGGVVDATAKVYGTQGLRVIDGSIPPTQVS 561
>pdb|3GDN|A Chain A, Almond Hydroxynitrile Lyase In Complex With Benzaldehyde
pdb|3GDN|B Chain B, Almond Hydroxynitrile Lyase In Complex With Benzaldehyde
pdb|3GDP|A Chain A, Hydroxynitrile Lyase From Almond, Monoclinic Crystal Form
pdb|3GDP|B Chain B, Hydroxynitrile Lyase From Almond, Monoclinic Crystal Form
Length = 521
Score = 89.4 bits (220), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 124/490 (25%), Positives = 191/490 (38%), Gaps = 96/490 (19%)
Query: 390 VLGGTSVLNGMMYIRGSRADYDNWAKAGNPGWSYQDVLPYFLKSEDNQQATMMDQGFHGV 449
VLGGTS++N +Y R + + Y A W V + ED Q + V
Sbjct: 102 VLGGTSIINAGVYARANTSIY----SASGVDWDMDLVNQTYEWVEDTIVYKPNSQSWQSV 157
Query: 450 G--GYLTVTQFPYHPPLSHSILQGAMELGMPVRDLNGVSHTGFMIAQTTTRNGSRLSTSK 507
+L P H G + G TG TR+ + +K
Sbjct: 158 TKTAFLEAGVHPNH--------------GFSLDHEEGTRITGSTFDNKGTRHAADELLNK 203
Query: 508 AFLRPIISRNNLHILLNTTVTRVIV-DPLTKAAIGVEFL-TNGRLER--LQAKNEVIVCA 563
+ NNL + ++ +V ++I + A GV + +NG + +++K EVIV A
Sbjct: 204 G------NSNNLRVGVHASVEKIIFSNAPGLTATGVIYRDSNGTPHQAFVRSKGEVIVSA 257
Query: 564 GAVDSPRILLLSGIGPREELRRLNIAPIHDLPGVGKNLHNHVAHFLNFF----INDTDTT 619
G + +P++LLLSG+GP L LNI + P VG+ LH++ +F+N I T T
Sbjct: 258 GTIGTPQLLLLSGVGPESYLSSLNIPVVLSHPYVGQFLHDNPRNFINILPPNPIEPTIVT 317
Query: 620 ALNWATAMEYLLFRDGLMSGTGLSEVTGFVHSRLSNPAEDNPDLQIFFSGYLANCARTGQ 679
L G+S F S+ P F S
Sbjct: 318 VL-------------------GISN--DFYQCSFSSLPFTTPPFGFFPS----------- 345
Query: 680 VGERSDGMNNSTPVPQRTISIFPT-VLHPKSRGYLTLK-DNNPQTPPLIFARYLTHPDDV 737
+S P+P T + F + V P S G LTLK +N + P + Y ++ D+
Sbjct: 346 ---------SSYPLPNSTFAHFASKVAGPLSYGSLTLKSSSNVRVSPNVKFNYYSNLTDL 396
Query: 738 KTLVDGIKIAIRLTQTAALQKY---------GFRIDTTPVKGCENLPFGCDAYWECAIRR 788
V G+K L T AL+ Y GF I P+ + DA +E R
Sbjct: 397 SHCVSGMKKIGELLSTDALKPYKVEDLPGVEGFNILGIPLPKDQT----DDAAFETFCRE 452
Query: 789 NTGAENHQAGSCKMGPASDPSAVVSPELKVHGVDRLRVVDCSIMPAVTSGNTNAPAIMIA 848
+ + H G C +G V+ + +V G++ LRVVD S P + + +M+
Sbjct: 453 SVASYWHYHGGCLVG------KVLDGDFRVTGINALRVVDGSTFPYTPASHPQGFYLMLG 506
Query: 849 EKASDLIKQQ 858
I Q+
Sbjct: 507 RYVGIKILQE 516
>pdb|1JU2|A Chain A, Crystal Structure Of The Hydroxynitrile Lyase From Almond
pdb|1JU2|B Chain B, Crystal Structure Of The Hydroxynitrile Lyase From Almond
Length = 536
Score = 89.0 bits (219), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 124/490 (25%), Positives = 191/490 (38%), Gaps = 96/490 (19%)
Query: 390 VLGGTSVLNGMMYIRGSRADYDNWAKAGNPGWSYQDVLPYFLKSEDNQQATMMDQGFHGV 449
VLGGTS++N +Y R + + Y A W V + ED Q + V
Sbjct: 102 VLGGTSIINAGVYARANTSIY----SASGVDWDMDLVNQTYEWVEDTIVYKPNSQSWQSV 157
Query: 450 G--GYLTVTQFPYHPPLSHSILQGAMELGMPVRDLNGVSHTGFMIAQTTTRNGSRLSTSK 507
+L P H G + G TG TR+ + +K
Sbjct: 158 TKTAFLEAGVHPNH--------------GFSLDHEEGTRITGSTFDNKGTRHAADELLNK 203
Query: 508 AFLRPIISRNNLHILLNTTVTRVIV-DPLTKAAIGVEFL-TNGRLER--LQAKNEVIVCA 563
+ NNL + ++ +V ++I + A GV + +NG + +++K EVIV A
Sbjct: 204 G------NSNNLRVGVHASVEKIIFSNAPGLTATGVIYRDSNGTPHQAFVRSKGEVIVSA 257
Query: 564 GAVDSPRILLLSGIGPREELRRLNIAPIHDLPGVGKNLHNHVAHFLNFF----INDTDTT 619
G + +P++LLLSG+GP L LNI + P VG+ LH++ +F+N I T T
Sbjct: 258 GTIGTPQLLLLSGVGPESYLSSLNIPVVLSHPYVGQFLHDNPRNFINILPPNPIEPTIVT 317
Query: 620 ALNWATAMEYLLFRDGLMSGTGLSEVTGFVHSRLSNPAEDNPDLQIFFSGYLANCARTGQ 679
L G+S F S+ P F S
Sbjct: 318 VL-------------------GISN--DFYQCSFSSLPFTTPPFGFFPS----------- 345
Query: 680 VGERSDGMNNSTPVPQRTISIFPT-VLHPKSRGYLTLK-DNNPQTPPLIFARYLTHPDDV 737
+S P+P T + F + V P S G LTLK +N + P + Y ++ D+
Sbjct: 346 ---------SSYPLPNSTFAHFASKVAGPLSYGSLTLKSSSNVRVSPNVKFNYYSNLTDL 396
Query: 738 KTLVDGIKIAIRLTQTAALQKY---------GFRIDTTPVKGCENLPFGCDAYWECAIRR 788
V G+K L T AL+ Y GF I P+ + DA +E R
Sbjct: 397 SHCVSGMKKIGELLSTDALKPYKVEDLPGVEGFNILGIPLPKDQT----DDAAFETFCRE 452
Query: 789 NTGAENHQAGSCKMGPASDPSAVVSPELKVHGVDRLRVVDCSIMPAVTSGNTNAPAIMIA 848
+ + H G C +G V+ + +V G++ LRVVD S P + + +M+
Sbjct: 453 SVASYWHYHGGCLVG------KVLDGDFRVTGINALRVVDGSTFPYTPASHPQGFYLMLG 506
Query: 849 EKASDLIKQQ 858
I Q+
Sbjct: 507 RYVGIKILQE 516
>pdb|3RED|A Chain A, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase
Isozyme-1
pdb|3RED|B Chain B, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase
Isozyme-1
pdb|3RED|C Chain C, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase
Isozyme-1
pdb|3RED|D Chain D, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase
Isozyme-1
pdb|3RED|E Chain E, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase
Isozyme-1
pdb|3RED|F Chain F, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase
Isozyme-1
pdb|3RED|G Chain G, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase
Isozyme-1
pdb|3RED|H Chain H, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase
Isozyme-1
pdb|3RED|I Chain I, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase
Isozyme-1
pdb|3RED|J Chain J, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase
Isozyme-1
pdb|3RED|K Chain K, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase
Isozyme-1
pdb|3RED|L Chain L, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase
Isozyme-1
Length = 521
Score = 82.0 bits (201), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 122/489 (24%), Positives = 189/489 (38%), Gaps = 93/489 (19%)
Query: 390 VLGGTSVLNGMMYIRGSRADYDNWAKAGNPGWSYQDVLPYFLKSEDNQQATMMDQGFHGV 449
VLGGTS++N +Y R + + A W V + ED Q +
Sbjct: 102 VLGGTSMINAGVYARANTKIF----SASGIEWDMDLVNQTYDWVEDTIVYKPDKQAWQS- 156
Query: 450 GGYLTVTQFPYHPPLSHSILQGAMELGMPVRDLNGVSHTGFMIAQTTTRNGSRLSTSKAF 509
LT T F L +L + G + G TG TR+ S +K
Sbjct: 157 ---LTKTAF-----LEAGVLP---DNGFSLDHEAGTRLTGSTFDNNGTRHASDELLNKG- 204
Query: 510 LRPIISRNNLHILLNTTVTRVIVDPLTKA--AIGVEFL-TNGRLER--LQAKNEVIVCAG 564
NNL + ++ +V ++I + AIGV + +NG + ++ + EVIV AG
Sbjct: 205 -----DPNNLRVAVHASVEKIIFSSNSSGVTAIGVIYKDSNGTPHQAFVRGEGEVIVSAG 259
Query: 565 AVDSPRILLLSGIGPREELRRLNIAPIHDLPGVGKNLHNHVAHFLNFF----INDTDTTA 620
+ SP++LLLSG+GP L LNI + P VG+ LH++ +F+N I + T
Sbjct: 260 PIGSPQLLLLSGVGPESYLSSLNIPVVLSHPYVGQFLHDNPRNFINILPPNPIEPSTVTV 319
Query: 621 LNWATAMEYLLFRDGLMSGTGLSEVTGFVHSRLSNPAEDNPDLQIFFSGYLANCARTGQV 680
L G+ S F S+ P F
Sbjct: 320 L-------------GITS--------NFYQCSFSSLPFSIPPFAFF-------------- 344
Query: 681 GERSDGMNNSTPVPQRTISIFPT-VLHPKSRGYLTL-KDNNPQTPPLIFARYLTHPDDVK 738
N + P+P T + F V P S G +TL D++ + P + Y ++ D+
Sbjct: 345 ------PNPTYPLPNSTFAHFVNKVPGPLSYGSITLNSDSDVRVAPNVKFNYYSNSTDLA 398
Query: 739 TLVDGIKIAIRLTQTAALQKY---------GFRIDTTPVKGCENLPFGCDAYWECAIRRN 789
V G+K L + AL+ Y GF I P+ + DA +E R
Sbjct: 399 HCVSGMKKIGELLSSDALKPYKVEDLPGIDGFDILGIPLPENQT----DDAAFETFCREA 454
Query: 790 TGAENHQAGSCKMGPASDPSAVVSPELKVHGVDRLRVVDCSIMPAVTSGNTNAPAIMIAE 849
+ H G C +G V+ + +V G++ LRVVD S P + + +M+
Sbjct: 455 VASYWHYHGGCLVG------EVLDGDFRVTGINALRVVDGSTFPYSPASHPQGFYLMLGR 508
Query: 850 KASDLIKQQ 858
I Q+
Sbjct: 509 YVGSKILQE 517
>pdb|1NAA|A Chain A, Cellobiose Dehydrogenase Flavoprotein Fragment In Complex
With Cellobionolactam
pdb|1NAA|B Chain B, Cellobiose Dehydrogenase Flavoprotein Fragment In Complex
With Cellobionolactam
Length = 541
Score = 54.3 bits (129), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 94/391 (24%), Positives = 151/391 (38%), Gaps = 76/391 (19%)
Query: 499 NGSRLSTSKAFLRPIISRNNLHILLNTTVTRVIVDPLTKAAIGVE-----FLTNGRLERL 553
NG R +L+ ++R N N V+ V+ + +GV+ NG + +
Sbjct: 186 NGKRAGPVATYLQTALARPNFTFKTNVMVSNVVRN--GSQILGVQTNDPTLGPNGFIP-V 242
Query: 554 QAKNEVIVCAGAVDSPRILLLSGIGPREELRRLNIAPIH-----------DLPGVGKNLH 602
K VI+ AGA + RIL SGIGP + ++ + P +LP VG N
Sbjct: 243 TPKGRVILSAGAFGTSRILFQSGIGPTDMIQTVQSNPTAAAALPPQNQWINLP-VGMNAQ 301
Query: 603 NHVAHFLNFFINDTDTTALNW---------ATAMEYLLFRDGLMSGTGLSEVTGFVHSRL 653
++ + L F D NW A A +YL + G+ +G
Sbjct: 302 DNPSINLVFTHPSIDAYE-NWADVWSNPRPADAAQYLANQSGVFAGA------------- 347
Query: 654 SNPAEDNPDLQIFFSGYLAN--CARTGQVGERSDGMNNSTPVPQRTISIFPTVLH----P 707
+P L F+ Y + R Q R + ++ +P IF ++
Sbjct: 348 ------SPKLN-FWRAYSGSDGFTRYAQGTVRPGAASVNSSLPYNASQIFTITVYLSTGI 400
Query: 708 KSRGYLTLKD---NNPQTPPLIFARYLTHPDDVKTLVDGIKIAIRLTQTAALQKYGFRID 764
+SRG + + TPP +L +P D L+ + + + G +
Sbjct: 401 QSRGRIGIDAALRGTVLTPP-----WLVNPVDKTVLLQALHDVVSNIGSIP----GLTMI 451
Query: 765 TTPVKGCENLPFGCDAYWECAIRRNTGAENHQAGSCKMGPASDPSAVVSPELKVHGVDRL 824
T V + L DAY + NH S +G +S SAVV +KV G + L
Sbjct: 452 TPDV--TQTLEEYVDAYDPATMN-----SNHWVSSTTIG-SSPQSAVVDSNVKVFGTNNL 503
Query: 825 RVVDCSIMPAVTSGNTNAPAIMIAEKASDLI 855
+VD I+P + +GN + AE+A+ I
Sbjct: 504 FIVDAGIIPHLPTGNPQGTLMSAAEQAAAKI 534
Score = 33.5 bits (75), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
Query: 290 ENHQAGSCKMGPASDPSAVVSPELKVHGVDRLRVVDCSIMPAVTSGS 336
NH S +G +S SAVV +KV G + L +VD I+P + +G+
Sbjct: 473 SNHWVSSTTIG-SSPQSAVVDSNVKVFGTNNLFIVDAGIIPHLPTGN 518
>pdb|1KDG|A Chain A, Crystal Structure Of The Flavin Domain Of Cellobiose
Dehydrogenase
pdb|1KDG|B Chain B, Crystal Structure Of The Flavin Domain Of Cellobiose
Dehydrogenase
Length = 546
Score = 54.3 bits (129), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 94/391 (24%), Positives = 151/391 (38%), Gaps = 76/391 (19%)
Query: 499 NGSRLSTSKAFLRPIISRNNLHILLNTTVTRVIVDPLTKAAIGVE-----FLTNGRLERL 553
NG R +L+ ++R N N V+ V+ + +GV+ NG + +
Sbjct: 191 NGKRAGPVATYLQTALARPNFTFKTNVMVSNVVRN--GSQILGVQTNDPTLGPNGFIP-V 247
Query: 554 QAKNEVIVCAGAVDSPRILLLSGIGPREELRRLNIAPIH-----------DLPGVGKNLH 602
K VI+ AGA + RIL SGIGP + ++ + P +LP VG N
Sbjct: 248 TPKGRVILSAGAFGTSRILFQSGIGPTDMIQTVQSNPTAAAALPPQNQWINLP-VGMNAQ 306
Query: 603 NHVAHFLNFFINDTDTTALNW---------ATAMEYLLFRDGLMSGTGLSEVTGFVHSRL 653
++ + L F D NW A A +YL + G+ +G
Sbjct: 307 DNPSINLVFTHPSIDAYE-NWADVWSNPRPADAAQYLANQSGVFAGA------------- 352
Query: 654 SNPAEDNPDLQIFFSGYLAN--CARTGQVGERSDGMNNSTPVPQRTISIFPTVLH----P 707
+P L F+ Y + R Q R + ++ +P IF ++
Sbjct: 353 ------SPKLN-FWRAYSGSDGFTRYAQGTVRPGAASVNSSLPYNASQIFTITVYLSTGI 405
Query: 708 KSRGYLTLKD---NNPQTPPLIFARYLTHPDDVKTLVDGIKIAIRLTQTAALQKYGFRID 764
+SRG + + TPP +L +P D L+ + + + G +
Sbjct: 406 QSRGRIGIDAALRGTVLTPP-----WLVNPVDKTVLLQALHDVVSNIGSIP----GLTMI 456
Query: 765 TTPVKGCENLPFGCDAYWECAIRRNTGAENHQAGSCKMGPASDPSAVVSPELKVHGVDRL 824
T V + L DAY + NH S +G +S SAVV +KV G + L
Sbjct: 457 TPDV--TQTLEEYVDAYDPATMN-----SNHWVSSTTIG-SSPQSAVVDSNVKVFGTNNL 508
Query: 825 RVVDCSIMPAVTSGNTNAPAIMIAEKASDLI 855
+VD I+P + +GN + AE+A+ I
Sbjct: 509 FIVDAGIIPHLPTGNPQGTLMSAAEQAAAKI 539
Score = 33.5 bits (75), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
Query: 290 ENHQAGSCKMGPASDPSAVVSPELKVHGVDRLRVVDCSIMPAVTSGS 336
NH S +G +S SAVV +KV G + L +VD I+P + +G+
Sbjct: 478 SNHWVSSTTIG-SSPQSAVVDSNVKVFGTNNLFIVDAGIIPHLPTGN 523
>pdb|1UN2|A Chain A, Crystal Structure Of Circularly Permuted Cpdsba_q100t99
Preserved Global Fold And Local Structural Adjustments
Length = 197
Score = 30.4 bits (67), Expect = 4.9, Method: Composition-based stats.
Identities = 20/79 (25%), Positives = 34/79 (43%), Gaps = 2/79 (2%)
Query: 614 NDTDTTALNWATAMEYLLFRDGLMSGTGLSEVTGFVHSRLSNPAEDNPDLQIFFSGYLAN 673
++ D +A ++YL + G GTG G ++ L P P + FFS + +
Sbjct: 70 SNMDVFVQQYADTVKYLSEKKG--GGTGAQYEDGKQYTTLEKPVAGAPQVLEFFSFFCPH 127
Query: 674 CARTGQVGERSDGMNNSTP 692
C + +V SD + P
Sbjct: 128 CYQFEEVLHISDNVKKKLP 146
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.136 0.430
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 27,124,997
Number of Sequences: 62578
Number of extensions: 1165441
Number of successful extensions: 2147
Number of sequences better than 100.0: 14
Number of HSP's better than 100.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 2083
Number of HSP's gapped (non-prelim): 43
length of query: 868
length of database: 14,973,337
effective HSP length: 107
effective length of query: 761
effective length of database: 8,277,491
effective search space: 6299170651
effective search space used: 6299170651
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 56 (26.2 bits)