BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy1205
(868 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P18172|DHGL_DROPS Glucose dehydrogenase [acceptor] OS=Drosophila pseudoobscura
pseudoobscura GN=Gld PE=3 SV=4
Length = 625
Score = 611 bits (1575), Expect = e-174, Method: Compositional matrix adjust.
Identities = 298/474 (62%), Positives = 369/474 (77%), Gaps = 9/474 (1%)
Query: 390 VLGGTSVLNGMMYIRGSRADYDNWAKAGNPGWSYQDVLPYFLKSEDNQQATMMDQGFHGV 449
VLGGTSV+NGMMYIRG+R DYD+WA GNPGWSYQDVLP+F KSEDN + + +H
Sbjct: 146 VLGGTSVMNGMMYIRGNREDYDDWAAQGNPGWSYQDVLPFFKKSEDNLELDAVGTEYHAK 205
Query: 450 GGYLTVTQFPYHPPLSHSILQGAMELGMPVRDLNGVSHTGFMIAQTTTRNGSRLSTSKAF 509
GG L V +FPY+PPLS+++L+ E+G V+DLNG + TGFMIAQ T RNG R S+++AF
Sbjct: 206 GGLLPVGKFPYNPPLSYALLKAGEEMGFSVQDLNGQNSTGFMIAQMTARNGIRYSSARAF 265
Query: 510 LRPIISRNNLHILLNTTVTRVIVDPLTKAAIGVEFLTN-GRLERLQAKNEVIVCAGAVDS 568
LRP RNNLHILLNTTVT+V++ P TK +GVE G + ++ K EVIV GAV+S
Sbjct: 266 LRPARMRNNLHILLNTTVTKVLIHPGTKNVVGVEVSDQFGSMRKILVKKEVIVSGGAVNS 325
Query: 569 PRILLLSGIGPREELRRLNIAPIHDLPGVGKNLHNHVAHFLNFFINDTDTTALNWATAME 628
P+ILLLSG+GP+E+L+++N+ P+H LPGVGKNLHNHVA+F NFFI+D DT LNWATAME
Sbjct: 326 PQILLLSGVGPKEDLQKVNVRPVHHLPGVGKNLHNHVAYFTNFFIDDADTAPLNWATAME 385
Query: 629 YLLFRDGLMSGTGLSEVTGFVHSRLSNPAEDNPDLQIFFSGYLANCARTGQVGERSDGMN 688
YLLFRDGLMSGTG+S+VT + +R ++ + PDLQ++F GYLA+CARTGQVGE N
Sbjct: 386 YLLFRDGLMSGTGISDVTAKMATRWAD-RPNLPDLQLYFGGYLASCARTGQVGELLS--N 442
Query: 689 NSTPVPQRTISIFPTVLHPKSRGYLTLKDNNPQTPPLIFARYLTHPDDVKTLVDGIKIAI 748
NS R I IFP VL+PKSRGY+TL+ +P PP IFA YLT DVKTLV+GIK AI
Sbjct: 443 NS-----RAIQIFPAVLNPKSRGYITLRSADPLDPPRIFANYLTDERDVKTLVEGIKFAI 497
Query: 749 RLTQTAALQKYGFRIDTTPVKGCENLPFGCDAYWECAIRRNTGAENHQAGSCKMGPASDP 808
RL+QT+ L++YG R+D T VKGCE+ F DAYWECA+R+NTG ENHQAGSCKMGP+ DP
Sbjct: 498 RLSQTSPLKQYGMRLDKTVVKGCESHAFASDAYWECAVRQNTGPENHQAGSCKMGPSHDP 557
Query: 809 SAVVSPELKVHGVDRLRVVDCSIMPAVTSGNTNAPAIMIAEKASDLIKQQWIGK 862
AVV+ EL+VHGV LRV+D SIMP VT+GNT+APA+MIAEK + L+K+ W K
Sbjct: 558 MAVVNHELRVHGVRGLRVMDTSIMPKVTAGNTHAPAVMIAEKGAYLLKRAWGAK 611
Score = 222 bits (565), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 106/141 (75%), Positives = 120/141 (85%), Gaps = 3/141 (2%)
Query: 84 NTCNCPVTQP-GPTLASTCGGSAYMLFMGLLEVFIRSQCDLEDPCNRPLSR--GFPDRDY 140
++C+C V P GPTLASTCGGSA+MLFMGLLEVFIRSQCDLEDPC R +R PD +Y
Sbjct: 6 SSCDCLVGVPTGPTLASTCGGSAFMLFMGLLEVFIRSQCDLEDPCGRASTRFRSEPDYEY 65
Query: 141 DFIVIGGGSSGAVVANRLSEVPNWRVLLIEAGGDEPTGTQIPSMFLNFLGSSIDYGYKTE 200
DFIVIGGGS+G+VVA+RLSEVP W+VLLIEAGGDEP G QIPSMFLNF+GS IDY Y TE
Sbjct: 66 DFIVIGGGSAGSVVASRLSEVPQWKVLLIEAGGDEPVGAQIPSMFLNFIGSDIDYRYNTE 125
Query: 201 PEDMACLNNEERRCNWPRGKV 221
PE MACL++ E+RC WPRGKV
Sbjct: 126 PERMACLSSMEQRCYWPRGKV 146
Score = 119 bits (299), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 60/86 (69%), Positives = 71/86 (82%), Gaps = 3/86 (3%)
Query: 1 MSCQMNTCNCPVTQP-GPTLASTCGGSAYMLFMGLLEVFIRSQCDLEDPCNRPLS--RGF 57
M+ ++C+C V P GPTLASTCGGSA+MLFMGLLEVFIRSQCDLEDPC R + R
Sbjct: 1 MATSPSSCDCLVGVPTGPTLASTCGGSAFMLFMGLLEVFIRSQCDLEDPCGRASTRFRSE 60
Query: 58 PDRDYDFIVIGGGSSGAVVANRLSEM 83
PD +YDFIVIGGGS+G+VVA+RLSE+
Sbjct: 61 PDYEYDFIVIGGGSAGSVVASRLSEV 86
Score = 87.8 bits (216), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 40/57 (70%), Positives = 49/57 (85%)
Query: 280 KCAIRRNTGAENHQAGSCKMGPASDPSAVVSPELKVHGVDRLRVVDCSIMPAVTSGS 336
+CA+R+NTG ENHQAGSCKMGP+ DP AVV+ EL+VHGV LRV+D SIMP VT+G+
Sbjct: 532 ECAVRQNTGPENHQAGSCKMGPSHDPMAVVNHELRVHGVRGLRVMDTSIMPKVTAGN 588
>sp|P18173|DHGL_DROME Glucose dehydrogenase [acceptor] OS=Drosophila melanogaster GN=Gld
PE=3 SV=3
Length = 625
Score = 598 bits (1541), Expect = e-170, Method: Compositional matrix adjust.
Identities = 290/474 (61%), Positives = 361/474 (76%), Gaps = 9/474 (1%)
Query: 390 VLGGTSVLNGMMYIRGSRADYDNWAKAGNPGWSYQDVLPYFLKSEDNQQATMMDQGFHGV 449
VLGGTSVLNGMMY+RG+R DYD+WA GNPGW+Y DVLP+F KSEDN + +H
Sbjct: 146 VLGGTSVLNGMMYVRGNREDYDDWAADGNPGWAYNDVLPFFKKSEDNLDLDEVGTEYHAK 205
Query: 450 GGYLTVTQFPYHPPLSHSILQGAMELGMPVRDLNGVSHTGFMIAQTTTRNGSRLSTSKAF 509
GG L V +FPY+PPLS++IL+ ELG V DLNG + TGFMIAQ T RNG R S+++AF
Sbjct: 206 GGLLPVGKFPYNPPLSYAILKAGEELGFSVHDLNGQNSTGFMIAQMTARNGIRYSSARAF 265
Query: 510 LRPIISRNNLHILLNTTVTRVIVDPLTKAAIGVEFLTN-GRLERLQAKNEVIVCAGAVDS 568
LRP RNNLHILLNTT T++++ P TK +GVE G ++ K EV++ AGAV+S
Sbjct: 266 LRPARMRNNLHILLNTTATKILIHPHTKNVLGVEVSDQFGSTRKILVKKEVVLSAGAVNS 325
Query: 569 PRILLLSGIGPREELRRLNIAPIHDLPGVGKNLHNHVAHFLNFFINDTDTTALNWATAME 628
P ILLLSG+GP++EL+++N+ +H+LPGVGKNLHNHV +F NFFI+D DT LNWATAME
Sbjct: 326 PHILLLSGVGPKDELQQVNVRTVHNLPGVGKNLHNHVTYFTNFFIDDADTAPLNWATAME 385
Query: 629 YLLFRDGLMSGTGLSEVTGFVHSRLSNPAEDNPDLQIFFSGYLANCARTGQVGERSDGMN 688
YLLFRDGLMSGTG+S+VT + +R ++ E PDLQ++F GYLA+CARTGQVGE N
Sbjct: 386 YLLFRDGLMSGTGISDVTAKLATRYADSPE-RPDLQLYFGGYLASCARTGQVGELLS--N 442
Query: 689 NSTPVPQRTISIFPTVLHPKSRGYLTLKDNNPQTPPLIFARYLTHPDDVKTLVDGIKIAI 748
NS R+I IFP VL+P+SRG++ L+ +P PP I A YLTH DVKTLV+GIK I
Sbjct: 443 NS-----RSIQIFPAVLNPRSRGFIGLRSADPLEPPRIVANYLTHEQDVKTLVEGIKFVI 497
Query: 749 RLTQTAALQKYGFRIDTTPVKGCENLPFGCDAYWECAIRRNTGAENHQAGSCKMGPASDP 808
RL+QT L++YG R+D T VKGCE FG DAYWECA+R+NTG ENHQAGSCKMGP+ DP
Sbjct: 498 RLSQTTPLKQYGMRLDKTVVKGCEAHAFGSDAYWECAVRQNTGPENHQAGSCKMGPSHDP 557
Query: 809 SAVVSPELKVHGVDRLRVVDCSIMPAVTSGNTNAPAIMIAEKASDLIKQQWIGK 862
AVV+ EL+VHG+ LRV+D SIMP V+SGNT+APA+MIAEK + L+K+ W K
Sbjct: 558 MAVVNHELRVHGIRGLRVMDTSIMPKVSSGNTHAPAVMIAEKGAYLLKRAWGAK 611
Score = 222 bits (566), Expect = 8e-57, Method: Compositional matrix adjust.
Identities = 107/141 (75%), Positives = 119/141 (84%), Gaps = 3/141 (2%)
Query: 84 NTCNCPVTQP-GPTLASTCGGSAYMLFMGLLEVFIRSQCDLEDPCNRPLSR--GFPDRDY 140
+ C+C V P GPTLASTCGGSA+MLFMGLLEVFIRSQCDLEDPC R SR PD +Y
Sbjct: 6 SACDCLVGVPTGPTLASTCGGSAFMLFMGLLEVFIRSQCDLEDPCGRASSRFRSEPDYEY 65
Query: 141 DFIVIGGGSSGAVVANRLSEVPNWRVLLIEAGGDEPTGTQIPSMFLNFLGSSIDYGYKTE 200
DFIVIGGGS+G+VVA+RLSEVP W+VLLIEAGGDEP G QIPSMFLNF+GS IDY Y TE
Sbjct: 66 DFIVIGGGSAGSVVASRLSEVPQWKVLLIEAGGDEPVGAQIPSMFLNFIGSDIDYRYNTE 125
Query: 201 PEDMACLNNEERRCNWPRGKV 221
PE MACL++ E+RC WPRGKV
Sbjct: 126 PEPMACLSSMEQRCYWPRGKV 146
Score = 122 bits (307), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 62/86 (72%), Positives = 70/86 (81%), Gaps = 3/86 (3%)
Query: 1 MSCQMNTCNCPVTQP-GPTLASTCGGSAYMLFMGLLEVFIRSQCDLEDPCNRPLS--RGF 57
MS + C+C V P GPTLASTCGGSA+MLFMGLLEVFIRSQCDLEDPC R S R
Sbjct: 1 MSASASACDCLVGVPTGPTLASTCGGSAFMLFMGLLEVFIRSQCDLEDPCGRASSRFRSE 60
Query: 58 PDRDYDFIVIGGGSSGAVVANRLSEM 83
PD +YDFIVIGGGS+G+VVA+RLSE+
Sbjct: 61 PDYEYDFIVIGGGSAGSVVASRLSEV 86
Score = 87.4 bits (215), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 39/57 (68%), Positives = 49/57 (85%)
Query: 280 KCAIRRNTGAENHQAGSCKMGPASDPSAVVSPELKVHGVDRLRVVDCSIMPAVTSGS 336
+CA+R+NTG ENHQAGSCKMGP+ DP AVV+ EL+VHG+ LRV+D SIMP V+SG+
Sbjct: 532 ECAVRQNTGPENHQAGSCKMGPSHDPMAVVNHELRVHGIRGLRVMDTSIMPKVSSGN 588
>sp|Q985M5|BETA_RHILO Choline dehydrogenase OS=Rhizobium loti (strain MAFF303099) GN=betA
PE=3 SV=1
Length = 550
Score = 263 bits (672), Expect = 5e-69, Method: Compositional matrix adjust.
Identities = 170/480 (35%), Positives = 247/480 (51%), Gaps = 50/480 (10%)
Query: 390 VLGGTSVLNGMMYIRGSRADYDNWAKAGNPGWSYQDVLPYFLKSEDNQQATMMDQGFHGV 449
V+GG+S +NGM+Y+RG D+D+WA+ G GW + DVLPYF + EDN + G+ G
Sbjct: 83 VIGGSSSINGMVYVRGHARDFDHWAEEGATGWGFADVLPYFKRMEDNDGG---EDGWRGH 139
Query: 450 GGYLTVTQFPYHPPLSHSILQGAMELGMPVRD-LNGVSHTGFMIAQTTTRNGSRLSTSKA 508
GG L V + PL + ++ + G + D NG GF + T G R S + A
Sbjct: 140 GGPLHVQRGSRKNPLYGAFVEAGRQAGFELTDDYNGSKQEGFGPMEQTISGGRRWSAASA 199
Query: 509 FLRPIISRNNLHILLNTTVTRVIVDPLTKAAIGVEFLTNGRLERLQAKNEVIVCAGAVDS 568
+L+P + R N+ L+ RVI++ + AIGVE + +++ ++A+ EVIV A +++S
Sbjct: 200 YLKPALKRKNVS-LVKGFARRVIIE--NQRAIGVEIEAHKQIQVVKARREVIVAASSINS 256
Query: 569 PRILLLSGIGPREELRRLNIAPIHDLPGVGKNLHNHVAHFLNFFINDTDTTALNWATAM- 627
P+IL+LSGIGP E LR IA + D PGVG+NL +H + +I T + + +
Sbjct: 257 PKILMLSGIGPAEHLRENGIAVVADRPGVGRNLQDH----MELYIQQESTKPITLNSVLN 312
Query: 628 ---------EYLLFRDGLMSGTGLSEVTGFVHSRLSNPAEDNPDLQIFFSGYLANCARTG 678
++L F+ GL T E FV SR D PD+Q F A G
Sbjct: 313 PFSKALIGAQWLFFKSGL-GATNHFEAAAFVRSRA---GVDYPDIQYHF--IPAAVRYDG 366
Query: 679 QVGERSDGMNNSTPVPQRTISIFPTVLHPKSRGYLTLKDNNPQTPPLIFARYLTHPDDVK 738
+ +S G P R+ KSRG +TL+ +P+ P+I Y++HPDD
Sbjct: 367 KAAAKSHGFQAHVG-PMRS----------KSRGSVTLRSPDPKAKPVIRFNYMSHPDDWT 415
Query: 739 TLVDGIKIAIRLTQTAALQKYGFRIDTTPVKGCENLP---FGCDAYWECAIRRNTGAENH 795
I++ + +A + +G E P D + IR + + H
Sbjct: 416 EFRHCIRLTREIFGQSAFDAF---------RGQEISPGSHVQSDDDLDVFIRDHAESAYH 466
Query: 796 QAGSCKMGPASDPSAVVSPELKVHGVDRLRVVDCSIMPAVTSGNTNAPAIMIAEKASDLI 855
G+CKMG A D ++VV PE +V GVD LRV D SI P VT+GN NAP+IM EKASD I
Sbjct: 467 PCGTCKMGRADDVTSVVDPECRVIGVDGLRVADSSIFPRVTNGNLNAPSIMTGEKASDHI 526
Score = 55.5 bits (132), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/54 (51%), Positives = 36/54 (66%)
Query: 283 IRRNTGAENHQAGSCKMGPASDPSAVVSPELKVHGVDRLRVVDCSIMPAVTSGS 336
IR + + H G+CKMG A D ++VV PE +V GVD LRV D SI P VT+G+
Sbjct: 457 IRDHAESAYHPCGTCKMGRADDVTSVVDPECRVIGVDGLRVADSSIFPRVTNGN 510
Score = 45.4 bits (106), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/90 (37%), Positives = 47/90 (52%), Gaps = 16/90 (17%)
Query: 139 DYDFIVIGGGSSGAVVANRLSEVPNWRVLLIEAGGDE-------PTGTQIPSMFLNFLGS 191
+ DF++IG GS+G+ +A RLSE V++IE GG + P+ IP LN S
Sbjct: 3 EADFVIIGSGSAGSAMAYRLSEDGKHSVIVIEFGGSDIGPLIQMPSALSIP---LNM--S 57
Query: 192 SIDYGYKTEPEDMACLNNEERRCNWPRGKV 221
D+G+ +EPE R PRGKV
Sbjct: 58 LYDWGFASEPEPHLG----GRVLATPRGKV 83
>sp|Q6UPE0|CHDH_RAT Choline dehydrogenase, mitochondrial OS=Rattus norvegicus GN=Chdh
PE=1 SV=1
Length = 599
Score = 262 bits (670), Expect = 8e-69, Method: Compositional matrix adjust.
Identities = 167/480 (34%), Positives = 243/480 (50%), Gaps = 47/480 (9%)
Query: 390 VLGGTSVLNGMMYIRGSRADYDNWAKAGNPGWSYQDVLPYFLKSEDNQQATMMDQGFHGV 449
V GG+S LN M+YIRG DY+ W + G GW Y LPYF K++ ++ M + G
Sbjct: 132 VWGGSSSLNAMVYIRGHAEDYNRWHRQGAEGWDYAHCLPYFRKAQKHELGANM---YRGG 188
Query: 450 GGYLTVTQFPYHPPLSHSILQGAMELGMP-VRDLNGVSHTGFMIAQTTTRNGSRLSTSKA 508
G L V++ + PL + LQ A + G P D+NG GF T G R ST+ A
Sbjct: 189 DGPLHVSRGKTNHPLHQAFLQAARQAGYPFTEDMNGFQQEGFGWMDMTIHQGKRWSTASA 248
Query: 509 FLRPIISRNNLHILLNTTVTRVIVDPLTKAAIGVEFLTNGRLERLQAKNEVIVCAGAVDS 568
+LRP +SR NL + T V+RV+ + A+GVE++ +G+ + EVI+ GA++S
Sbjct: 249 YLRPALSRPNLRAEVQTLVSRVLFE--GTRAVGVEYIKDGQSHKAYVSREVILSGGAINS 306
Query: 569 PRILLLSGIGPREELRRLNIAPIHDLPGVGKNLHNHVAHFLNFFINDTDTTALNWATAME 628
P++L+LSG+G ++L++L I + LPGVG+NL +H L +I T + +A +
Sbjct: 307 PQLLMLSGVGNADDLKKLGIPVVCHLPGVGQNLQDH----LEIYIQHACTQPITLHSAQK 362
Query: 629 YL---------LFRDGLMSGTGLSEVTGFVHSRLSNPAEDNPDLQIFFSGYLANCARTGQ 679
L L+R T E GF+ SR P +PD+Q F Q
Sbjct: 363 PLRKVCIGLEWLWRFTGDGATAHLETGGFIRSR---PGVPHPDIQFHF--------LPSQ 411
Query: 680 VGERSDGMNNSTPVPQRTISIFPTVLHPKSRGYLTLKDNNPQTPPLIFARYLTHPDDVKT 739
V + + P Q + + S G+L L+ NPQ P+I YL+ DV+
Sbjct: 412 VID-----HGRKPTQQEAYQVHVGTMRATSVGWLKLRSTNPQDHPMINPNYLSTETDVED 466
Query: 740 LVDGIKIAIRLTQTAALQKYGFRIDTTPVKGCENLP---FGCDAYWECAIRRNTGAENHQ 796
+K+ + A P +G E P D + +R + H
Sbjct: 467 FRQCVKLTREIFAQEAF---------APFRGKELQPGSHVQSDKEIDAFVRAKADSAYHP 517
Query: 797 AGSCKMGPASDPSAVVSPELKVHGVDRLRVVDCSIMPAVTSGNTNAPAIMIAEKASDLIK 856
+ +CKMG SDP+AVV + +V GV+ LRV+D SIMP+V SGN NAP IMIAEKA+D+IK
Sbjct: 518 SCTCKMGQPSDPTAVVDQQTRVIGVENLRVIDASIMPSVVSGNLNAPTIMIAEKAADVIK 577
Score = 55.8 bits (133), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 26/54 (48%), Positives = 37/54 (68%)
Query: 283 IRRNTGAENHQAGSCKMGPASDPSAVVSPELKVHGVDRLRVVDCSIMPAVTSGS 336
+R + H + +CKMG SDP+AVV + +V GV+ LRV+D SIMP+V SG+
Sbjct: 507 VRAKADSAYHPSCTCKMGQPSDPTAVVDQQTRVIGVENLRVIDASIMPSVVSGN 560
Score = 55.5 bits (132), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 36/92 (39%), Positives = 52/92 (56%), Gaps = 13/92 (14%)
Query: 139 DYDFIVIGGGSSGAVVANRLSEVPNWRVLLIEAG-GDEPTGTQ-------IPSMFL-NFL 189
+Y FIV+G GS+G V+ANRL+E PN RVLL+EAG D G++ +P+ + N
Sbjct: 45 EYTFIVVGAGSAGCVLANRLTEDPNHRVLLLEAGPKDLLMGSKRLQWKIHMPAALVANLC 104
Query: 190 GSSIDYGYKTEPEDMACLNNEERRCNWPRGKV 221
++ Y TE + + R WPRG+V
Sbjct: 105 DDKYNWYYHTEAQP----GLDGRVLYWPRGRV 132
Score = 35.8 bits (81), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 16/35 (45%), Positives = 23/35 (65%)
Query: 61 DYDFIVIGGGSSGAVVANRLSEMNTCNCPVTQPGP 95
+Y FIV+G GS+G V+ANRL+E + + GP
Sbjct: 45 EYTFIVVGAGSAGCVLANRLTEDPNHRVLLLEAGP 79
>sp|Q8BJ64|CHDH_MOUSE Choline dehydrogenase, mitochondrial OS=Mus musculus GN=Chdh PE=1
SV=1
Length = 596
Score = 261 bits (667), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 166/481 (34%), Positives = 247/481 (51%), Gaps = 49/481 (10%)
Query: 390 VLGGTSVLNGMMYIRGSRADYDNWAKAGNPGWSYQDVLPYFLKSEDNQQATMMDQGFHGV 449
V GG+S LN M+YIRG DY+ W + G GW Y LPYF K++ ++ M + G
Sbjct: 129 VWGGSSSLNAMVYIRGHAEDYNRWHREGAEGWDYAHCLPYFRKAQRHELGANM---YRGG 185
Query: 450 GGYLTVTQFPYHPPLSHSILQGAMELGMP-VRDLNGVSHTGFMIAQTTTRNGSRLSTSKA 508
G L V++ + PL + LQ A + G P D+NG GF T G R ST+ A
Sbjct: 186 DGPLHVSRGKTNHPLHQAFLQAARQAGYPFTEDMNGFQQEGFGWMDMTVHQGKRWSTACA 245
Query: 509 FLRPIISRNNLHILLNTTVTRVIVDPLTKAAIGVEFLTNGRLERLQAKNEVIVCAGAVDS 568
+L P++SR NL + T V+RV+ + A+GVE++ +G+ + EVI+ GA++S
Sbjct: 246 YLHPVLSRPNLRAEVQTLVSRVLFE--GTRAVGVEYIKDGQRHKAYVSREVILSGGAINS 303
Query: 569 PRILLLSGIGPREELRRLNIAPIHDLPGVGKNLHNHVAHFLNFFINDTDTTALNWATA-- 626
P++L+LSG+G ++LR+L+I + LPGVG+NL +H L ++ T + +A
Sbjct: 304 PQLLMLSGVGNADDLRKLDIPVVCHLPGVGQNLQDH----LEVYVQQACTQPITLHSAQK 359
Query: 627 --------MEYLLFRDGLMSGTGLSEVTGFVHSRLSNPAEDNPDLQIFFSGYLANCARTG 678
+E+L G T E GF+ SR P +PD+Q F
Sbjct: 360 PLRKVCIGLEWLWSYTG-DGATAHLETGGFIRSR---PGVPHPDIQFHFL--------PS 407
Query: 679 QVGERSDGMNNSTPVPQRTISIFPTVLHPKSRGYLTLKDNNPQTPPLIFARYLTHPDDVK 738
QV + + P Q + + S G+L L+ NP+ P+I YL+ DV+
Sbjct: 408 QVID-----HGRKPTQQEAYQVHVGTMRATSVGWLKLRSANPRDHPVIHPNYLSTETDVE 462
Query: 739 TLVDGIKIAIRLTQTAALQKYGFRIDTTPVKGCENLP---FGCDAYWECAIRRNTGAENH 795
++++ + AL P +G E P D + +R + H
Sbjct: 463 DFRQCVRLSREIFAQEAL---------APFRGKELQPGSHVQSDKEIDAFVRAKADSAYH 513
Query: 796 QAGSCKMGPASDPSAVVSPELKVHGVDRLRVVDCSIMPAVTSGNTNAPAIMIAEKASDLI 855
+ +CKMG +SDP+AVV + KV GV+ LRVVD SIMP+V SGN NAP +MIAEKA+D+I
Sbjct: 514 PSCTCKMGRSSDPTAVVDAQTKVIGVENLRVVDASIMPSVVSGNLNAPTVMIAEKAADII 573
Query: 856 K 856
K
Sbjct: 574 K 574
Score = 60.5 bits (145), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 39/105 (37%), Positives = 60/105 (57%), Gaps = 14/105 (13%)
Query: 126 PCNRPLSRGFPDRDYDFIVIGGGSSGAVVANRLSEVPNWRVLLIEAG-GDEPTGTQ---- 180
PC+R ++ D +Y F+V+G GS+G V+A+RL+E PN RVLL+EAG D G++
Sbjct: 30 PCSRAVASVGKD-EYTFVVVGAGSAGCVLASRLTEDPNHRVLLLEAGPKDLLMGSKRLQW 88
Query: 181 ---IPSMFL-NFLGSSIDYGYKTEPEDMACLNNEERRCNWPRGKV 221
+P+ + N ++ Y TEP+ + R WPRG+V
Sbjct: 89 KIHMPAALVSNLCDDKYNWYYHTEPQP----GMDSRVLYWPRGRV 129
Score = 57.8 bits (138), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 28/54 (51%), Positives = 38/54 (70%)
Query: 283 IRRNTGAENHQAGSCKMGPASDPSAVVSPELKVHGVDRLRVVDCSIMPAVTSGS 336
+R + H + +CKMG +SDP+AVV + KV GV+ LRVVD SIMP+V SG+
Sbjct: 504 VRAKADSAYHPSCTCKMGRSSDPTAVVDAQTKVIGVENLRVVDASIMPSVVSGN 557
Score = 36.6 bits (83), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 30/48 (62%), Gaps = 1/48 (2%)
Query: 48 PCNRPLSRGFPDRDYDFIVIGGGSSGAVVANRLSEMNTCNCPVTQPGP 95
PC+R ++ D +Y F+V+G GS+G V+A+RL+E + + GP
Sbjct: 30 PCSRAVASVGKD-EYTFVVVGAGSAGCVLASRLTEDPNHRVLLLEAGP 76
>sp|Q9WWW2|ALKJ_PSEPU Alcohol dehydrogenase [acceptor] OS=Pseudomonas putida GN=alkJ PE=3
SV=1
Length = 552
Score = 259 bits (661), Expect = 9e-68, Method: Compositional matrix adjust.
Identities = 174/518 (33%), Positives = 260/518 (50%), Gaps = 47/518 (9%)
Query: 358 HLILALSCHRNSKSMVW---TGSVLWTAVSCLLSP---VLGGTSVLNGMMYIRGSRADYD 411
H+ L ++ NSK + W T L P LGG+S +N M+YIRG DY
Sbjct: 43 HMPLGIALLSNSKKLNWAFQTAPQQHLNERSLFWPRGKTLGGSSSINAMVYIRGHEEDYQ 102
Query: 412 NWAKAGNPGWSYQDVLPYFLKSEDNQQATMMDQGFHGVGGYLTVTQFPYHPPLSHSILQG 471
W +AG W ++ F K E NQ+ +HG G L V+ PLS S +Q
Sbjct: 103 AWEQAGGEYWGWKRAFALFKKLEHNQR--FDKSNYHGTDGELAVSDLKDLNPLSKSFVQA 160
Query: 472 AMELGMPVR-DLNGVSHTGFMIAQTTTRNGSRLSTSKAFLRPIISRNNLHILLNTTVTRV 530
ME + D NG G Q T ++G R S+++AFL +I R NL I+ T+V
Sbjct: 161 GMEAKISFNGDFNGAHQEGVGFYQVTQKHGQRWSSARAFLHDVIDRPNLDIITEAHATKV 220
Query: 531 IVDPLTKAAIGVEFLTNGRLERLQAKN--EVIVCAGAVDSPRILLLSGIGPREELRRLNI 588
+ + + A+GV ++ ++++ + EVI+ GAV++P++L+LSG+G EL+ I
Sbjct: 221 LFE--DRKAVGVSYIQKNMHQQVKTTDSGEVILSLGAVNTPQLLMLSGVGAAAELKEHGI 278
Query: 589 APIHDLPGVGKNLHNHVAHFLNFFINDTDTTALNWATA-------MEYLLFRDGLMSGTG 641
A +HDLP VGKNL +H+ L N + ++ Y+ R G ++ +
Sbjct: 279 ALVHDLPEVGKNLQDHLDITLMCAANSRTPIGVAFSFIPRGLVGLFSYIFKRKGFLT-SN 337
Query: 642 LSEVTGFVHSRLSNPAEDNPDLQI-FFSGYLANCARTGQVGERSDGMNNSTPVPQRTISI 700
++E GFV S +P D P+LQ F YL + R VG ++
Sbjct: 338 VAESGGFVKS---SPERDRPNLQFHFLPTYLKDHGRKIAVG--------------YGYTL 380
Query: 701 FPTVLHPKSRGYLTLKDNNPQTPPLIFARYLTHPDDVKTLVDGIKIAIRLTQTAALQKYG 760
L PKSRG + LK NP PLI YL+ P+D+KT++ GIKI + ++ K+
Sbjct: 381 HICDLLPKSRGRIGLKSANPMDDPLIDPNYLSDPEDIKTMIAGIKIGRAIFDAPSMAKH- 439
Query: 761 FRIDTTPVKGCENLPFGCDAYWECAIRRNTGAENHQAGSCKMGPASDPSAVVSPELKVHG 820
F+ + P + D IR H G+C+MG DP++VV P L+V G
Sbjct: 440 FKREIVPGPAVTS-----DDEIVADIRSRAETIYHPVGTCRMG--KDPASVVDPCLQVRG 492
Query: 821 VDRLRVVDCSIMPAVTSGNTNAPAIMIAEKASDLIKQQ 858
+ +RVVD SIMP + +GNTNAP IMIAE A+++I ++
Sbjct: 493 LRNIRVVDASIMPNLVAGNTNAPTIMIAENAAEIIVRK 530
Score = 54.7 bits (130), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 33/83 (39%), Positives = 50/83 (60%), Gaps = 6/83 (7%)
Query: 140 YDFIVIGGGSSGAVVANRLSEVPNWRVLLIEAGGDEPTGTQIPSMFLNFLGSS--IDYGY 197
YD+I++G GS+G V+ANRLS P+ RV L+EAG + + + L +S +++ +
Sbjct: 2 YDYIIVGAGSAGCVLANRLSADPSKRVCLLEAGPRDTNPLIHMPLGIALLSNSKKLNWAF 61
Query: 198 KTEPEDMACLNNEERRCNWPRGK 220
+T P+ LN ER WPRGK
Sbjct: 62 QTAPQQH--LN--ERSLFWPRGK 80
Score = 47.8 bits (112), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/54 (44%), Positives = 34/54 (62%), Gaps = 2/54 (3%)
Query: 283 IRRNTGAENHQAGSCKMGPASDPSAVVSPELKVHGVDRLRVVDCSIMPAVTSGS 336
IR H G+C+MG DP++VV P L+V G+ +RVVD SIMP + +G+
Sbjct: 460 IRSRAETIYHPVGTCRMG--KDPASVVDPCLQVRGLRNIRVVDASIMPNLVAGN 511
Score = 35.0 bits (79), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 23/34 (67%)
Query: 62 YDFIVIGGGSSGAVVANRLSEMNTCNCPVTQPGP 95
YD+I++G GS+G V+ANRLS + + + GP
Sbjct: 2 YDYIIVGAGSAGCVLANRLSADPSKRVCLLEAGP 35
>sp|Q8NE62|CHDH_HUMAN Choline dehydrogenase, mitochondrial OS=Homo sapiens GN=CHDH PE=2
SV=2
Length = 594
Score = 256 bits (654), Expect = 6e-67, Method: Compositional matrix adjust.
Identities = 165/482 (34%), Positives = 247/482 (51%), Gaps = 47/482 (9%)
Query: 390 VLGGTSVLNGMMYIRGSRADYDNWAKAGNPGWSYQDVLPYFLKSEDNQQATMMDQGFHGV 449
V GG+S LN M+Y+RG DY+ W + G GW Y LPYF K++ ++ + G
Sbjct: 127 VWGGSSSLNAMVYVRGHAEDYERWQRQGARGWDYAHCLPYFRKAQGHELGASR---YRGA 183
Query: 450 GGYLTVTQFPYHPPLSHSILQGAMELGMPV-RDLNGVSHTGFMIAQTTTRNGSRLSTSKA 508
G L V++ + PL + L+ + G P+ D+NG GF T G R S + A
Sbjct: 184 DGPLRVSRGKTNHPLHCAFLEATQQAGYPLTEDMNGFQQEGFGWMDMTIHEGKRWSAACA 243
Query: 509 FLRPIISRNNLHILLNTTVTRVIVDPLTKAAIGVEFLTNGRLERLQAKNEVIVCAGAVDS 568
+L P +SR NL T V+RV+ + A+GVE++ NG+ R A EVI+ GA++S
Sbjct: 244 YLHPALSRTNLKAEAETLVSRVLFE--GTRAVGVEYVKNGQSHRAYASKEVILSGGAINS 301
Query: 569 PRILLLSGIGPREELRRLNIAPIHDLPGVGKNLHNHVAHFLNFFINDTDTTALNWATAME 628
P++L+LSGIG ++L++L I + LPGVG+NL +H L +I T + +A +
Sbjct: 302 PQLLMLSGIGNADDLKKLGIPVVCHLPGVGQNLQDH----LEIYIQQACTRPITLHSAQK 357
Query: 629 YL---------LFRDGLMSGTGLSEVTGFVHSRLSNPAEDNPDLQIFFSGYLANCARTGQ 679
L L++ T E GF+ S+ P +PD+Q F Q
Sbjct: 358 PLRKVCIGLEWLWKFTGEGATAHLETGGFIRSQ---PGVPHPDIQFHF--------LPSQ 406
Query: 680 VGERSDGMNNSTPVPQRTISIFPTVLHPKSRGYLTLKDNNPQTPPLIFARYLTHPDDVKT 739
V + + P Q + + S G+L L+ NPQ P+I YL+ +T
Sbjct: 407 VID-----HGRVPTQQEAYQVHVGPMRGTSVGWLKLRSANPQDHPVIQPNYLS----TET 457
Query: 740 LVDGIKIAIRLTQTAALQKYGFRIDTTPVKGCENLP---FGCDAYWECAIRRNTGAENHQ 796
++ ++ ++LT+ Q+ P +G E P D + +R + H
Sbjct: 458 DIEDFRLCVKLTREIFAQE-----ALAPFRGKELQPGSHIQSDKEIDAFVRAKADSAYHP 512
Query: 797 AGSCKMGPASDPSAVVSPELKVHGVDRLRVVDCSIMPAVTSGNTNAPAIMIAEKASDLIK 856
+ +CKMG SDP+AVV P+ +V GV+ LRVVD SIMP++ SGN NAP IMIAEKA+D+IK
Sbjct: 513 SCTCKMGQPSDPTAVVDPQTRVLGVENLRVVDASIMPSMVSGNLNAPTIMIAEKAADIIK 572
Query: 857 QQ 858
Q
Sbjct: 573 GQ 574
Score = 58.2 bits (139), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 27/54 (50%), Positives = 38/54 (70%)
Query: 283 IRRNTGAENHQAGSCKMGPASDPSAVVSPELKVHGVDRLRVVDCSIMPAVTSGS 336
+R + H + +CKMG SDP+AVV P+ +V GV+ LRVVD SIMP++ SG+
Sbjct: 502 VRAKADSAYHPSCTCKMGQPSDPTAVVDPQTRVLGVENLRVVDASIMPSMVSGN 555
Score = 48.9 bits (115), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 36/100 (36%), Positives = 53/100 (53%), Gaps = 14/100 (14%)
Query: 132 SRGFPDRD-YDFIVIGGGSSGAVVANRLSEVPNWRVLLIEAG-GDEPTGTQ-------IP 182
S G RD Y ++V+G GS+G V+A RL+E P RVLL+EAG D G++ +P
Sbjct: 32 SAGSESRDEYSYVVVGAGSAGCVLAGRLTEDPAERVLLLEAGPKDVLAGSKRLSWKIHMP 91
Query: 183 SMFL-NFLGSSIDYGYKTEPEDMACLNNEERRCNWPRGKV 221
+ + N ++ Y TE + + R WPRG+V
Sbjct: 92 AALVANLCDDRYNWCYHTEVQR----GLDGRVLYWPRGRV 127
>sp|Q00593|ALKJ_PSEOL Alcohol dehydrogenase [acceptor] OS=Pseudomonas oleovorans GN=alkJ
PE=1 SV=1
Length = 558
Score = 254 bits (650), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 172/520 (33%), Positives = 264/520 (50%), Gaps = 57/520 (10%)
Query: 358 HLILALSCHRNSKSMVWT-----------GSVLWTAVSCLLSPVLGGTSVLNGMMYIRGS 406
H+ L ++ NSK + W S+ W LGG+S +N M+YIRG
Sbjct: 43 HMPLGIALLSNSKKLNWAFQTAPQQNLNGRSLFWPR-----GKTLGGSSSINAMVYIRGH 97
Query: 407 RADYDNWAKAGNPGWSYQDVLPYFLKSEDNQQATMMDQGFHGVGGYLTVTQFPYHPPLSH 466
DY W +A W + L F + E NQ+ + HGV G L V+ Y PLS
Sbjct: 98 EDDYHAWEQAAGRYWGWYRALELFKRLECNQRFDKSEH--HGVDGELAVSDLKYINPLSK 155
Query: 467 SILQGAMELGMPVR-DLNGVSHTGFMIAQTTTRNGSRLSTSKAFLRPIISRNNLHILLNT 525
+ +Q ME + D NG G Q T +NG R S+++AFL ++SR NL I+ +
Sbjct: 156 AFVQAGMEANINFNGDFNGEYQDGVGFYQVTQKNGQRWSSARAFLHGVLSRPNLDIITDA 215
Query: 526 TVTRVIVDPLTKAAIGVEFLTNGRLERLQAKN--EVIVCAGAVDSPRILLLSGIGPREEL 583
++++ + + A+GV ++ +++ + EV++ GAV +P +L+LSG+G EL
Sbjct: 216 HASKILFE--DRKAVGVSYIKKNMHHQVKTTSGGEVLLSLGAVGTPHLLMLSGVGAAAEL 273
Query: 584 RRLNIAPIHDLPGVGKNLHNHVAHFLNFFINDTD--TTALNW-----ATAMEYLLFRDGL 636
+ ++ +HDLP VGKNL +H+ L N + AL++ + Y+ R+G
Sbjct: 274 KEHGVSLVHDLPEVGKNLQDHLDITLMCAANSREPIGVALSFIPRGVSGLFSYVFKREGF 333
Query: 637 MSGTGLSEVTGFVHSRLSNPAEDNPDLQI-FFSGYLANCARTGQVGERSDGMNNSTPVPQ 695
++ + ++E GFV S +P D P+LQ F YL + R G
Sbjct: 334 LT-SNVAESGGFVKS---SPDRDRPNLQFHFLPTYLKDHGRKIAGG-------------- 375
Query: 696 RTISIFPTVLHPKSRGYLTLKDNNPQTPPLIFARYLTHPDDVKTLVDGIKIAIRLTQTAA 755
++ L PKSRG + LK NP PPLI YL+ +D+KT++ GIKI + Q +
Sbjct: 376 YGYTLHICDLLPKSRGRIGLKSANPLQPPLIDPNYLSDHEDIKTMIAGIKIGRAILQAPS 435
Query: 756 LQKYGFRIDTTPVKGCENLPFGCDAYWECAIRRNTGAENHQAGSCKMGPASDPSAVVSPE 815
+ K+ F+ + P + + D IRR H G+C+MG DP++VV P
Sbjct: 436 MAKH-FKHEVVPGQAVK-----TDDEIIEDIRRRAETIYHPVGTCRMG--KDPASVVDPC 487
Query: 816 LKVHGVDRLRVVDCSIMPAVTSGNTNAPAIMIAEKASDLI 855
LK+ G+ +RVVD SIMP + +GNTNAP IMIAE A+++I
Sbjct: 488 LKIRGLANIRVVDASIMPHLVAGNTNAPTIMIAENAAEII 527
Score = 53.1 bits (126), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 31/83 (37%), Positives = 48/83 (57%), Gaps = 6/83 (7%)
Query: 140 YDFIVIGGGSSGAVVANRLSEVPNWRVLLIEAGGDEPTGTQIPSMFLNFLGSS--IDYGY 197
YD+I++G GS+G V+ANRLS P+ RV L+EAG + + + L +S +++ +
Sbjct: 2 YDYIIVGAGSAGCVLANRLSADPSKRVCLLEAGPRDTNPLIHMPLGIALLSNSKKLNWAF 61
Query: 198 KTEPEDMACLNNEERRCNWPRGK 220
+T P+ N R WPRGK
Sbjct: 62 QTAPQQ----NLNGRSLFWPRGK 80
Score = 51.6 bits (122), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 25/54 (46%), Positives = 35/54 (64%), Gaps = 2/54 (3%)
Query: 283 IRRNTGAENHQAGSCKMGPASDPSAVVSPELKVHGVDRLRVVDCSIMPAVTSGS 336
IRR H G+C+MG DP++VV P LK+ G+ +RVVD SIMP + +G+
Sbjct: 460 IRRRAETIYHPVGTCRMG--KDPASVVDPCLKIRGLANIRVVDASIMPHLVAGN 511
Score = 35.4 bits (80), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 23/34 (67%)
Query: 62 YDFIVIGGGSSGAVVANRLSEMNTCNCPVTQPGP 95
YD+I++G GS+G V+ANRLS + + + GP
Sbjct: 2 YDYIIVGAGSAGCVLANRLSADPSKRVCLLEAGP 35
>sp|P64264|Y1310_MYCBO Uncharacterized GMC-type oxidoreductase Mb1310 OS=Mycobacterium
bovis (strain ATCC BAA-935 / AF2122/97) GN=Mb1310 PE=3
SV=1
Length = 528
Score = 253 bits (645), Expect = 6e-66, Method: Compositional matrix adjust.
Identities = 166/472 (35%), Positives = 253/472 (53%), Gaps = 32/472 (6%)
Query: 390 VLGGTSVLNGMMYIRGSRADYDNWAKAGNPGWSYQDVLPYFLKSEDNQQATMMDQGF-HG 448
VLGG+S +N MM++RG +DYD WA P WSY DVL YF + E+ A G G
Sbjct: 83 VLGGSSSMNAMMWVRGFASDYDEWAARAGPRWSYADVLGYFRRIENVTAAWHFVSGDDSG 142
Query: 449 VGGYLTVTQFPYHPPLSHSILQGAMELGMPVRDLNGVSHTGFMIAQTTTRNGSRLSTSKA 508
V G L +++ ++ + L A E G N GF T R G+R ST+ A
Sbjct: 143 VTGPLHISRQRSPRSVTAAWLAAARECGFAAARPNSPRPEGFCETVVTQRRGARFSTADA 202
Query: 509 FLRPIISRNNLHILLNTTVTRVIVDPLTKAAIGVEFLTNGRLERLQAKNEVIVCAGAVDS 568
+L+P + R NL +L T TRV++D A+GVE+ ++G+ + A+ EV++CAGAV+S
Sbjct: 203 YLKPAMRRKNLRVLTGATATRVVID--GDRAVGVEYQSDGQTRIVYARREVVLCAGAVNS 260
Query: 569 PRILLLSGIGPREELRRLNIAPIHDLPGVGKNLHNHVAHFLNFFI-NDTDTTALNWATAM 627
P++L+LSGIG R+ L +I ++ P VG NL +H+ L F + D+ A +
Sbjct: 261 PQLLMLSGIGDRDHLAEHDIDTVYHAPEVGCNLLDHLVTVLGFDVEKDSLFAAEKPGQLI 320
Query: 628 EYLLFRDGLMSGTGLSEVTGFVHSRLSNPAEDNPDLQIFFSGYLANCARTGQVGERSDGM 687
YLL R G+++ + + E GFV SR P PDL++ F+ +
Sbjct: 321 SYLLRRRGMLT-SNVGEAYGFVRSR---PELKLPDLELIFAP--------------APFY 362
Query: 688 NNSTPVPQRTISIF-PTVLHPKSRGYLTLKDNNPQTPPLIFARYLTHPD--DVKTLVDGI 744
+ + P +F P ++ P+SRG +TL+ +P P+I RYL+ D ++ G+
Sbjct: 363 DEALVPPAGHGVVFGPILVAPQSRGQITLRSADPHAKPVIEPRYLSDLGGVDRAAMMAGL 422
Query: 745 KIAIRLTQTAALQKYGFRIDTTPVKGCENLPFGCDAYWECAIRRNTGAENHQAGSCKMGP 804
+I R+ Q L+ I P E +A E A+ + H G+C+MG
Sbjct: 423 RICARIAQARPLRDLLGSI-ARPRNSTEL----DEATLELALATCSHTLYHPMGTCRMG- 476
Query: 805 ASDPSAVVSPELKVHGVDRLRVVDCSIMPAVTSGNTNAPAIMIAEKASDLIK 856
SD ++VV P+L+V GVD LRV D S+MP+ G+T+AP+++I EKA+DLI+
Sbjct: 477 -SDEASVVDPQLRVRGVDGLRVADASVMPSTVRGHTHAPSVLIGEKAADLIR 527
Score = 62.0 bits (149), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 36/86 (41%), Positives = 49/86 (56%), Gaps = 5/86 (5%)
Query: 137 DRDYDFIVIGGGSSGAVVANRLSEVPNWRVLLIEAG-GDEPTGTQIPSMFLNFLGSSIDY 195
D D++V+G GS+GAVVA+RLS P V+ +EAG D+ +P+ F S ID+
Sbjct: 2 DTQSDYVVVGTGSAGAVVASRLSTDPATTVVALEAGPRDKNRFIGVPAAFSKLFRSEIDW 61
Query: 196 GYKTEPEDMACLNNEERRCNWPRGKV 221
Y TEP+ + R WPRGKV
Sbjct: 62 DYLTEPQP----ELDGREIYWPRGKV 83
Score = 49.7 bits (117), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 23/44 (52%), Positives = 31/44 (70%), Gaps = 2/44 (4%)
Query: 292 HQAGSCKMGPASDPSAVVSPELKVHGVDRLRVVDCSIMPAVTSG 335
H G+C+MG SD ++VV P+L+V GVD LRV D S+MP+ G
Sbjct: 468 HPMGTCRMG--SDEASVVDPQLRVRGVDGLRVADASVMPSTVRG 509
Score = 34.3 bits (77), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 29/61 (47%), Gaps = 5/61 (8%)
Query: 222 PNWRVLLIEAG-GDEPTGTQIPSMFLNFLGSSIDYGYKTEPEDMACLNNEERRCNWPRGK 280
P V+ +EAG D+ +P+ F S ID+ Y TEP+ + R WPRGK
Sbjct: 27 PATTVVALEAGPRDKNRFIGVPAAFSKLFRSEIDWDYLTEPQP----ELDGREIYWPRGK 82
Query: 281 C 281
Sbjct: 83 V 83
Score = 33.9 bits (76), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 22/37 (59%)
Query: 59 DRDYDFIVIGGGSSGAVVANRLSEMNTCNCPVTQPGP 95
D D++V+G GS+GAVVA+RLS + GP
Sbjct: 2 DTQSDYVVVGTGSAGAVVASRLSTDPATTVVALEAGP 38
>sp|P64263|Y1279_MYCTU Uncharacterized GMC-type oxidoreductase Rv1279/MT1316
OS=Mycobacterium tuberculosis GN=Rv1279 PE=3 SV=1
Length = 528
Score = 253 bits (645), Expect = 6e-66, Method: Compositional matrix adjust.
Identities = 166/472 (35%), Positives = 253/472 (53%), Gaps = 32/472 (6%)
Query: 390 VLGGTSVLNGMMYIRGSRADYDNWAKAGNPGWSYQDVLPYFLKSEDNQQATMMDQGF-HG 448
VLGG+S +N MM++RG +DYD WA P WSY DVL YF + E+ A G G
Sbjct: 83 VLGGSSSMNAMMWVRGFASDYDEWAARAGPRWSYADVLGYFRRIENVTAAWHFVSGDDSG 142
Query: 449 VGGYLTVTQFPYHPPLSHSILQGAMELGMPVRDLNGVSHTGFMIAQTTTRNGSRLSTSKA 508
V G L +++ ++ + L A E G N GF T R G+R ST+ A
Sbjct: 143 VTGPLHISRQRSPRSVTAAWLAAARECGFAAARPNSPRPEGFCETVVTQRRGARFSTADA 202
Query: 509 FLRPIISRNNLHILLNTTVTRVIVDPLTKAAIGVEFLTNGRLERLQAKNEVIVCAGAVDS 568
+L+P + R NL +L T TRV++D A+GVE+ ++G+ + A+ EV++CAGAV+S
Sbjct: 203 YLKPAMRRKNLRVLTGATATRVVID--GDRAVGVEYQSDGQTRIVYARREVVLCAGAVNS 260
Query: 569 PRILLLSGIGPREELRRLNIAPIHDLPGVGKNLHNHVAHFLNFFI-NDTDTTALNWATAM 627
P++L+LSGIG R+ L +I ++ P VG NL +H+ L F + D+ A +
Sbjct: 261 PQLLMLSGIGDRDHLAEHDIDTVYHAPEVGCNLLDHLVTVLGFDVEKDSLFAAEKPGQLI 320
Query: 628 EYLLFRDGLMSGTGLSEVTGFVHSRLSNPAEDNPDLQIFFSGYLANCARTGQVGERSDGM 687
YLL R G+++ + + E GFV SR P PDL++ F+ +
Sbjct: 321 SYLLRRRGMLT-SNVGEAYGFVRSR---PELKLPDLELIFAP--------------APFY 362
Query: 688 NNSTPVPQRTISIF-PTVLHPKSRGYLTLKDNNPQTPPLIFARYLTHPD--DVKTLVDGI 744
+ + P +F P ++ P+SRG +TL+ +P P+I RYL+ D ++ G+
Sbjct: 363 DEALVPPAGHGVVFGPILVAPQSRGQITLRSADPHAKPVIEPRYLSDLGGVDRAAMMAGL 422
Query: 745 KIAIRLTQTAALQKYGFRIDTTPVKGCENLPFGCDAYWECAIRRNTGAENHQAGSCKMGP 804
+I R+ Q L+ I P E +A E A+ + H G+C+MG
Sbjct: 423 RICARIAQARPLRDLLGSI-ARPRNSTEL----DEATLELALATCSHTLYHPMGTCRMG- 476
Query: 805 ASDPSAVVSPELKVHGVDRLRVVDCSIMPAVTSGNTNAPAIMIAEKASDLIK 856
SD ++VV P+L+V GVD LRV D S+MP+ G+T+AP+++I EKA+DLI+
Sbjct: 477 -SDEASVVDPQLRVRGVDGLRVADASVMPSTVRGHTHAPSVLIGEKAADLIR 527
Score = 62.0 bits (149), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 36/86 (41%), Positives = 49/86 (56%), Gaps = 5/86 (5%)
Query: 137 DRDYDFIVIGGGSSGAVVANRLSEVPNWRVLLIEAG-GDEPTGTQIPSMFLNFLGSSIDY 195
D D++V+G GS+GAVVA+RLS P V+ +EAG D+ +P+ F S ID+
Sbjct: 2 DTQSDYVVVGTGSAGAVVASRLSTDPATTVVALEAGPRDKNRFIGVPAAFSKLFRSEIDW 61
Query: 196 GYKTEPEDMACLNNEERRCNWPRGKV 221
Y TEP+ + R WPRGKV
Sbjct: 62 DYLTEPQP----ELDGREIYWPRGKV 83
Score = 49.7 bits (117), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 23/44 (52%), Positives = 31/44 (70%), Gaps = 2/44 (4%)
Query: 292 HQAGSCKMGPASDPSAVVSPELKVHGVDRLRVVDCSIMPAVTSG 335
H G+C+MG SD ++VV P+L+V GVD LRV D S+MP+ G
Sbjct: 468 HPMGTCRMG--SDEASVVDPQLRVRGVDGLRVADASVMPSTVRG 509
Score = 34.3 bits (77), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 29/61 (47%), Gaps = 5/61 (8%)
Query: 222 PNWRVLLIEAG-GDEPTGTQIPSMFLNFLGSSIDYGYKTEPEDMACLNNEERRCNWPRGK 280
P V+ +EAG D+ +P+ F S ID+ Y TEP+ + R WPRGK
Sbjct: 27 PATTVVALEAGPRDKNRFIGVPAAFSKLFRSEIDWDYLTEPQP----ELDGREIYWPRGK 82
Query: 281 C 281
Sbjct: 83 V 83
Score = 33.9 bits (76), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 22/37 (59%)
Query: 59 DRDYDFIVIGGGSSGAVVANRLSEMNTCNCPVTQPGP 95
D D++V+G GS+GAVVA+RLS + GP
Sbjct: 2 DTQSDYVVVGTGSAGAVVASRLSTDPATTVVALEAGP 38
>sp|Q47944|SDH_GLUOY L-sorbose 1-dehydrogenase OS=Gluconobacter oxydans PE=3 SV=1
Length = 531
Score = 252 bits (644), Expect = 8e-66, Method: Compositional matrix adjust.
Identities = 157/474 (33%), Positives = 250/474 (52%), Gaps = 35/474 (7%)
Query: 390 VLGGTSVLNGMMYIRGSRADYDNWAKAGNPGWSYQDVLPYFLKSEDNQQATMMDQGFHGV 449
+LGG S +N ++ RG +D+D WA G GWS++DV YF++SE N + +HG
Sbjct: 83 ILGGGSSINAEVFTRGHPSDFDRWAAEGADGWSFRDVQKYFIRSEGN---AVFSGTWHGT 139
Query: 450 GGYLTVTQFPYHPPLSHSILQGAMELGMPVR-DLNGVSHTGFMIAQTTTRNGSRLSTSKA 508
G L V+ P S + +Q E+G+P D NG S G I Q T RN R ST+
Sbjct: 140 NGPLGVSNLAEPNPTSRAFVQSCQEMGLPYNPDFNGASQEGAGIYQMTIRNNRRCSTAVG 199
Query: 509 FLRPIISRNNLHILLNTTVTRVIVDPLTKAAIGVEFLTNGRLERLQAKNEVIVCAGAVDS 568
+LRP + R NL ++ V +++ + A GV+++ NG L +A E++V AGA+ +
Sbjct: 200 YLRPALGRKNLTVVTRALVLKIVFN--GTRATGVQYIANGTLNTAEASQEIVVTAGAIGT 257
Query: 569 PRILLLSGIGPREELRRLNIAPIHDLPGVGKNLHNHVAHFLNFFINDTDT----TALNWA 624
P++++LSG+GP LR I + DLPGVG+NL +H + + ++ L+W
Sbjct: 258 PKLMMLSGVGPAAHLRENGIPVVQDLPGVGENLQDHFGVDIVAELKTDESFDKYRKLHWM 317
Query: 625 --TAMEYLLFRDGLMSGTGLSEVTGFVHSRLSNPAEDNPDLQIFFSGYLANCARTGQVGE 682
+EY +FR G ++ + + E F + S+P+ PDLQ F LA V
Sbjct: 318 LWAGLEYTMFRSGPVA-SNVVEGGAFWY---SDPSSGVPDLQFHF---LAEAGAEAGV-- 368
Query: 683 RSDGMNNSTPVPQRTISIFPTVLHPKSRGYLTLKDNNPQTPPLIFARYLTHPDDVKTLVD 742
S P I++ VL PKSRG + L+ +P+ P++ +L P D++T +
Sbjct: 369 ------TSVPKGASGITLNSYVLRPKSRGTVRLRSADPRVNPMVDPNFLGDPADLETSAE 422
Query: 743 GIKIAIRLTQTAALQKYGFRIDTTPVKGCENLPFGCDAYWECAIRRNTGAENHQAGSCKM 802
G++++ + +L+K+ + T G + Y + A R + H +CKM
Sbjct: 423 GVRLSYEMFSQPSLEKHIRK--TCFFSGKQPT---MQMYRDYA-REHGRTSYHPTCTCKM 476
Query: 803 GPASDPSAVVSPELKVHGVDRLRVVDCSIMPAVTSGNTNAPAIMIAEKASDLIK 856
G D +VV P LKVHG++ +R+ D S+MP++ NTNA IMI+E+A+D I+
Sbjct: 477 G--RDDMSVVDPRLKVHGLEGIRICDSSVMPSLLGSNTNAATIMISERAADFIQ 528
Score = 48.1 bits (113), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 33/83 (39%), Positives = 47/83 (56%), Gaps = 5/83 (6%)
Query: 140 YDFIVIGGGSSGAVVANRLSEVPNWRVLLIEAG-GDEPTGTQIPSMFLNFLGSSIDYGYK 198
+D+IV+GGGS+G V+A RLSE P+ RV LIEAG D +P F +
Sbjct: 5 FDYIVVGGGSAGCVLAARLSENPSVRVCLIEAGRRDTHPLIHMPVGFAKMTTGPHTWDLL 64
Query: 199 TEPEDMACLNNEERRCNWPRGKV 221
TEP+ A NN R+ + +G++
Sbjct: 65 TEPQKHA--NN--RQIPYVQGRI 83
Score = 42.0 bits (97), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 19/41 (46%), Positives = 28/41 (68%), Gaps = 2/41 (4%)
Query: 292 HQAGSCKMGPASDPSAVVSPELKVHGVDRLRVVDCSIMPAV 332
H +CKMG D +VV P LKVHG++ +R+ D S+MP++
Sbjct: 469 HPTCTCKMG--RDDMSVVDPRLKVHGLEGIRICDSSVMPSL 507
Score = 34.3 bits (77), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 14/21 (66%), Positives = 19/21 (90%)
Query: 62 YDFIVIGGGSSGAVVANRLSE 82
+D+IV+GGGS+G V+A RLSE
Sbjct: 5 FDYIVVGGGSAGCVLAARLSE 25
>sp|Q8G1Z8|BETA_BRUSU Choline dehydrogenase OS=Brucella suis biovar 1 (strain 1330)
GN=betA PE=3 SV=1
Length = 549
Score = 250 bits (638), Expect = 4e-65, Method: Compositional matrix adjust.
Identities = 166/485 (34%), Positives = 250/485 (51%), Gaps = 47/485 (9%)
Query: 385 CLLSP---VLGGTSVLNGMMYIRGSRADYDNWAKAGNPGWSYQDVLPYFLKSEDNQQATM 441
L++P VLGG+S +NGM+Y+RG D+D+W+++G GW+Y DVLPYF + E++Q
Sbjct: 74 SLVTPRGKVLGGSSSINGMVYVRGHACDFDHWSQSGARGWAYADVLPYFKRMENSQGG-- 131
Query: 442 MDQGFHGVGGYLTVTQFPYHPPLSHSILQGAMELGMPVRD-LNGVSHTGFMIAQTTTRNG 500
+G+ G G L V + PL H+ ++ + G V D NG GF + T NG
Sbjct: 132 -QEGWRGTNGPLYVQRGKRDNPLFHAFVEAGHQAGFEVTDDYNGEKQEGFGPMEQTIHNG 190
Query: 501 SRLSTSKAFLRPIISRNNLHILLNTTVTRVIVDPLTKAAIGVEFLTNGRLERLQAKNEVI 560
R S + A+L+P + R N+ L+ +++++ K A+GVE ++A+ EVI
Sbjct: 191 RRWSAANAYLKPALKRPNVK-LVKGFARKIVLE--GKRAVGVEIEAGRTFSTIRARREVI 247
Query: 561 VCAGAVDSPRILLLSGIGPREELRRLNIAPIHDLPGVGKNLHNHVAHFLNFFINDTDT-- 618
+ A +++SP++L+LSGIGP L+ I + D PGVG+NL +H+ ++ T
Sbjct: 248 IAASSINSPKLLMLSGIGPAAHLKEHGIDLVADRPGVGQNLQDHLEVYIQQECTQPITLY 307
Query: 619 TALNWAT----AMEYLLFRDGLMSGTGLSEVTGFVHSRLSNPAEDNPDLQIFFSGYLANC 674
+ LN + +E+LLF+ G T E FV S+ + PD+Q F L
Sbjct: 308 SELNLFSKARIGVEWLLFKTG-DGATNHFESAAFVRSKA---GVEYPDIQYHF---LPVA 360
Query: 675 AR-TGQVGERSDGMNNSTPVPQRTISIFPTVLHPKSRGYLTLKDNNPQTPPLIFARYLTH 733
R G+ +S G P R+ KSRG +TL+ NP+ P+I Y++H
Sbjct: 361 IRYDGKAAAQSHGFQAHVG-PMRS----------KSRGSVTLRSANPREKPVIKFNYMSH 409
Query: 734 PDDVKTLVDGIKIAIRLTQTAALQKYGFRIDTTPVKGCENLP---FGCDAYWECAIRRNT 790
DD +++ + AA P +G E P D + IR +
Sbjct: 410 EDDWADFRHCVRLTREIFGQAAFD---------PYRGAEIQPGAHVQTDDEIDNFIREHV 460
Query: 791 GAENHQAGSCKMGPASDPSAVVSPELKVHGVDRLRVVDCSIMPAVTSGNTNAPAIMIAEK 850
+ H G+CKMG DP AVV PE +V GV+ LRV D SI P +T+GN N P+IM+ EK
Sbjct: 461 ESAFHPCGTCKMGAVDDPMAVVDPECRVIGVEGLRVADSSIFPRITNGNLNGPSIMVGEK 520
Query: 851 ASDLI 855
ASD I
Sbjct: 521 ASDHI 525
Score = 56.2 bits (134), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/54 (50%), Positives = 35/54 (64%)
Query: 283 IRRNTGAENHQAGSCKMGPASDPSAVVSPELKVHGVDRLRVVDCSIMPAVTSGS 336
IR + + H G+CKMG DP AVV PE +V GV+ LRV D SI P +T+G+
Sbjct: 456 IREHVESAFHPCGTCKMGAVDDPMAVVDPECRVIGVEGLRVADSSIFPRITNGN 509
Score = 42.0 bits (97), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 46/85 (54%), Gaps = 10/85 (11%)
Query: 141 DFIVIGGGSSGAVVANRLSEVPNWRVLLIEAG-GDEPTGTQIPSMF---LNFLGSSIDYG 196
DF++IG GS+G+ +A RLSE + V++IE G D Q+P+ +N + D+G
Sbjct: 4 DFVIIGSGSAGSAMAYRLSENGRYSVIVIEYGVPDVGPLIQMPAALSFPMNM--ETYDWG 61
Query: 197 YKTEPEDMACLNNEERRCNWPRGKV 221
+ +EPE R PRGKV
Sbjct: 62 FSSEPEPHIG----GRSLVTPRGKV 82
>sp|B0CKN4|BETA_BRUSI Choline dehydrogenase OS=Brucella suis (strain ATCC 23445 / NCTC
10510) GN=betA PE=3 SV=1
Length = 549
Score = 250 bits (638), Expect = 4e-65, Method: Compositional matrix adjust.
Identities = 166/485 (34%), Positives = 250/485 (51%), Gaps = 47/485 (9%)
Query: 385 CLLSP---VLGGTSVLNGMMYIRGSRADYDNWAKAGNPGWSYQDVLPYFLKSEDNQQATM 441
L++P VLGG+S +NGM+Y+RG D+D+W+++G GW+Y DVLPYF + E++Q
Sbjct: 74 SLVTPRGKVLGGSSSINGMVYVRGHACDFDHWSQSGARGWAYADVLPYFKRMENSQGG-- 131
Query: 442 MDQGFHGVGGYLTVTQFPYHPPLSHSILQGAMELGMPVRD-LNGVSHTGFMIAQTTTRNG 500
+G+ G G L V + PL H+ ++ + G V D NG GF + T NG
Sbjct: 132 -QEGWRGTNGPLYVQRGKRDNPLFHAFVEAGHQAGFEVTDDYNGEKQEGFGPMEQTIHNG 190
Query: 501 SRLSTSKAFLRPIISRNNLHILLNTTVTRVIVDPLTKAAIGVEFLTNGRLERLQAKNEVI 560
R S + A+L+P + R N+ L+ +++++ K A+GVE ++A+ EVI
Sbjct: 191 RRWSAANAYLKPALKRPNVK-LVKGFARKIVLE--GKRAVGVEIEAGRTFSTIRARREVI 247
Query: 561 VCAGAVDSPRILLLSGIGPREELRRLNIAPIHDLPGVGKNLHNHVAHFLNFFINDTDT-- 618
+ A +++SP++L+LSGIGP L+ I + D PGVG+NL +H+ ++ T
Sbjct: 248 IAASSINSPKLLMLSGIGPAAHLKEHGIDLVADRPGVGQNLQDHLEVYIQQECTQPITLY 307
Query: 619 TALNWAT----AMEYLLFRDGLMSGTGLSEVTGFVHSRLSNPAEDNPDLQIFFSGYLANC 674
+ LN + +E+LLF+ G T E FV S+ + PD+Q F L
Sbjct: 308 SKLNLFSKARIGVEWLLFKTG-DGATNHFESAAFVRSKA---GVEYPDIQYHF---LPVA 360
Query: 675 AR-TGQVGERSDGMNNSTPVPQRTISIFPTVLHPKSRGYLTLKDNNPQTPPLIFARYLTH 733
R G+ +S G P R+ KSRG +TL+ NP+ P+I Y++H
Sbjct: 361 IRYDGKAAAQSHGFQAHVG-PMRS----------KSRGSVTLRSANPREKPVIKFNYMSH 409
Query: 734 PDDVKTLVDGIKIAIRLTQTAALQKYGFRIDTTPVKGCENLP---FGCDAYWECAIRRNT 790
DD +++ + AA P +G E P D + IR +
Sbjct: 410 EDDWADFRHCVRLTREIFGQAAFD---------PYRGAEIQPGAHVQTDDEIDNFIREHV 460
Query: 791 GAENHQAGSCKMGPASDPSAVVSPELKVHGVDRLRVVDCSIMPAVTSGNTNAPAIMIAEK 850
+ H G+CKMG DP AVV PE +V GV+ LRV D SI P +T+GN N P+IM+ EK
Sbjct: 461 ESAFHPCGTCKMGAVDDPMAVVDPECRVIGVEGLRVADSSIFPRITNGNLNGPSIMVGEK 520
Query: 851 ASDLI 855
ASD I
Sbjct: 521 ASDHI 525
Score = 56.2 bits (134), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/54 (50%), Positives = 35/54 (64%)
Query: 283 IRRNTGAENHQAGSCKMGPASDPSAVVSPELKVHGVDRLRVVDCSIMPAVTSGS 336
IR + + H G+CKMG DP AVV PE +V GV+ LRV D SI P +T+G+
Sbjct: 456 IREHVESAFHPCGTCKMGAVDDPMAVVDPECRVIGVEGLRVADSSIFPRITNGN 509
Score = 42.0 bits (97), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 46/85 (54%), Gaps = 10/85 (11%)
Query: 141 DFIVIGGGSSGAVVANRLSEVPNWRVLLIEAG-GDEPTGTQIPSMF---LNFLGSSIDYG 196
DF++IG GS+G+ +A RLSE + V++IE G D Q+P+ +N + D+G
Sbjct: 4 DFVIIGSGSAGSAMAYRLSEDGRYSVIVIEYGVPDVGPLIQMPAALSFPMNM--ETYDWG 61
Query: 197 YKTEPEDMACLNNEERRCNWPRGKV 221
+ +EPE R PRGKV
Sbjct: 62 FSSEPEPHIG----GRSLVTPRGKV 82
>sp|A5VPA6|BETA_BRUO2 Choline dehydrogenase OS=Brucella ovis (strain ATCC 25840 / 63/290
/ NCTC 10512) GN=betA PE=3 SV=1
Length = 549
Score = 250 bits (638), Expect = 4e-65, Method: Compositional matrix adjust.
Identities = 166/485 (34%), Positives = 250/485 (51%), Gaps = 47/485 (9%)
Query: 385 CLLSP---VLGGTSVLNGMMYIRGSRADYDNWAKAGNPGWSYQDVLPYFLKSEDNQQATM 441
L++P VLGG+S +NGM+Y+RG D+D+W+++G GW+Y DVLPYF + E++Q
Sbjct: 74 SLVTPRGKVLGGSSSINGMVYVRGHACDFDHWSQSGARGWAYADVLPYFKRMENSQGG-- 131
Query: 442 MDQGFHGVGGYLTVTQFPYHPPLSHSILQGAMELGMPVRD-LNGVSHTGFMIAQTTTRNG 500
+G+ G G L V + PL H+ ++ + G V D NG GF + T NG
Sbjct: 132 -QEGWRGTNGPLYVQRGKRDNPLFHAFVEAGHQAGFEVTDDYNGEKQEGFGPMEQTIHNG 190
Query: 501 SRLSTSKAFLRPIISRNNLHILLNTTVTRVIVDPLTKAAIGVEFLTNGRLERLQAKNEVI 560
R S + A+L+P + R N+ L+ +++++ K A+GVE ++A+ EVI
Sbjct: 191 RRWSAANAYLKPALKRPNVK-LVKGFARKIVLE--GKRAVGVEIEAGRTFSTIRARREVI 247
Query: 561 VCAGAVDSPRILLLSGIGPREELRRLNIAPIHDLPGVGKNLHNHVAHFLNFFINDTDT-- 618
+ A +++SP++L+LSGIGP L+ I + D PGVG+NL +H+ ++ T
Sbjct: 248 IAASSINSPKLLMLSGIGPAAHLKEHGIDLVADRPGVGQNLQDHLEVYIQQECTQPITLY 307
Query: 619 TALNWAT----AMEYLLFRDGLMSGTGLSEVTGFVHSRLSNPAEDNPDLQIFFSGYLANC 674
+ LN + +E+LLF+ G T E FV S+ + PD+Q F L
Sbjct: 308 SKLNLFSKARIGVEWLLFKTG-DGATNHFESAAFVRSKA---GVEYPDIQYHF---LPVA 360
Query: 675 AR-TGQVGERSDGMNNSTPVPQRTISIFPTVLHPKSRGYLTLKDNNPQTPPLIFARYLTH 733
R G+ +S G P R+ KSRG +TL+ NP+ P+I Y++H
Sbjct: 361 IRYDGKAAAQSHGFQAHVG-PMRS----------KSRGSVTLRSANPREKPVIKFNYMSH 409
Query: 734 PDDVKTLVDGIKIAIRLTQTAALQKYGFRIDTTPVKGCENLP---FGCDAYWECAIRRNT 790
DD +++ + AA P +G E P D + IR +
Sbjct: 410 EDDWADFRHCVRLTREIFGQAAFD---------PYRGAEIQPGAHVQTDDEIDNFIREHV 460
Query: 791 GAENHQAGSCKMGPASDPSAVVSPELKVHGVDRLRVVDCSIMPAVTSGNTNAPAIMIAEK 850
+ H G+CKMG DP AVV PE +V GV+ LRV D SI P +T+GN N P+IM+ EK
Sbjct: 461 ESAFHPCGTCKMGAVDDPMAVVDPECRVIGVEGLRVADSSIFPRITNGNLNGPSIMVGEK 520
Query: 851 ASDLI 855
ASD I
Sbjct: 521 ASDHI 525
Score = 56.2 bits (134), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/54 (50%), Positives = 35/54 (64%)
Query: 283 IRRNTGAENHQAGSCKMGPASDPSAVVSPELKVHGVDRLRVVDCSIMPAVTSGS 336
IR + + H G+CKMG DP AVV PE +V GV+ LRV D SI P +T+G+
Sbjct: 456 IREHVESAFHPCGTCKMGAVDDPMAVVDPECRVIGVEGLRVADSSIFPRITNGN 509
Score = 42.0 bits (97), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 46/85 (54%), Gaps = 10/85 (11%)
Query: 141 DFIVIGGGSSGAVVANRLSEVPNWRVLLIEAG-GDEPTGTQIPSMF---LNFLGSSIDYG 196
DF++IG GS+G+ +A RLSE + V++IE G D Q+P+ +N + D+G
Sbjct: 4 DFVIIGSGSAGSAMAYRLSEDGRYSVIVIEYGVPDVGPLIQMPAALSFPMNM--ETYDWG 61
Query: 197 YKTEPEDMACLNNEERRCNWPRGKV 221
+ +EPE R PRGKV
Sbjct: 62 FSSEPEPHIG----GRSLVTPRGKV 82
>sp|A9M9H8|BETA_BRUC2 Choline dehydrogenase OS=Brucella canis (strain ATCC 23365 / NCTC
10854) GN=betA PE=3 SV=1
Length = 549
Score = 249 bits (637), Expect = 5e-65, Method: Compositional matrix adjust.
Identities = 164/477 (34%), Positives = 246/477 (51%), Gaps = 44/477 (9%)
Query: 390 VLGGTSVLNGMMYIRGSRADYDNWAKAGNPGWSYQDVLPYFLKSEDNQQATMMDQGFHGV 449
VLGG+S +NGM+Y+RG D+D+W+++G GW+Y DVLPYF + E++Q +G+ G
Sbjct: 82 VLGGSSSINGMVYVRGHACDFDHWSQSGARGWAYADVLPYFKRMENSQGG---QEGWRGT 138
Query: 450 GGYLTVTQFPYHPPLSHSILQGAMELGMPVRD-LNGVSHTGFMIAQTTTRNGSRLSTSKA 508
G L V + PL H+ ++ + G V D NG GF + T NG R S + A
Sbjct: 139 NGPLYVQRGKRDNPLFHAFVEAGHQAGFEVADDYNGEKQEGFGPMEQTIHNGRRWSAANA 198
Query: 509 FLRPIISRNNLHILLNTTVTRVIVDPLTKAAIGVEFLTNGRLERLQAKNEVIVCAGAVDS 568
+L+P + R N+ L+ +++++ K A+GVE ++A+ EVI+ A +++S
Sbjct: 199 YLKPALKRPNVK-LVKGFARKIVLE--GKRAVGVEIEAGRTFSTIRARREVIIAASSINS 255
Query: 569 PRILLLSGIGPREELRRLNIAPIHDLPGVGKNLHNHVAHFLNFFINDTDT--TALNWAT- 625
P++L+LSGIGP L+ I + D PGVG+NL +H+ ++ T + LN +
Sbjct: 256 PKLLMLSGIGPAAHLKEHGIDLVADRPGVGQNLQDHLEVYIQQECTQPITLYSELNLFSK 315
Query: 626 ---AMEYLLFRDGLMSGTGLSEVTGFVHSRLSNPAEDNPDLQIFFSGYLANCAR-TGQVG 681
+E+LLF+ G T E FV S+ + PD+Q F L R G+
Sbjct: 316 ARIGVEWLLFKTG-DGATNHFESAAFVRSKA---GVEYPDIQYHF---LPVAIRYDGKAA 368
Query: 682 ERSDGMNNSTPVPQRTISIFPTVLHPKSRGYLTLKDNNPQTPPLIFARYLTHPDDVKTLV 741
+S G P R+ KSRG +TL+ NP+ P+I Y++H DD
Sbjct: 369 AQSHGFQAHVG-PMRS----------KSRGSVTLRSANPREKPVIKFNYMSHEDDWADFR 417
Query: 742 DGIKIAIRLTQTAALQKYGFRIDTTPVKGCENLP---FGCDAYWECAIRRNTGAENHQAG 798
+++ + AA P +G E P D + IR + + H G
Sbjct: 418 HCVRLTREIFGQAAFD---------PYRGAEIQPGAHVQTDDEIDNFIREHVESAFHPCG 468
Query: 799 SCKMGPASDPSAVVSPELKVHGVDRLRVVDCSIMPAVTSGNTNAPAIMIAEKASDLI 855
+CKMG DP AVV PE +V GV+ LRV D SI P +T+GN N P+IM+ EKASD I
Sbjct: 469 TCKMGAVDDPMAVVDPECRVIGVEGLRVADSSIFPRITNGNLNGPSIMVGEKASDHI 525
Score = 56.2 bits (134), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/54 (50%), Positives = 35/54 (64%)
Query: 283 IRRNTGAENHQAGSCKMGPASDPSAVVSPELKVHGVDRLRVVDCSIMPAVTSGS 336
IR + + H G+CKMG DP AVV PE +V GV+ LRV D SI P +T+G+
Sbjct: 456 IREHVESAFHPCGTCKMGAVDDPMAVVDPECRVIGVEGLRVADSSIFPRITNGN 509
Score = 42.0 bits (97), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 46/85 (54%), Gaps = 10/85 (11%)
Query: 141 DFIVIGGGSSGAVVANRLSEVPNWRVLLIEAG-GDEPTGTQIPSMF---LNFLGSSIDYG 196
DF++IG GS+G+ +A RLSE + V++IE G D Q+P+ +N + D+G
Sbjct: 4 DFVIIGSGSAGSAMAYRLSEDGRYSVIVIEYGVPDVGPLIQMPAALSFPMNM--ETYDWG 61
Query: 197 YKTEPEDMACLNNEERRCNWPRGKV 221
+ +EPE R PRGKV
Sbjct: 62 FSSEPEPHIG----GRSLVTPRGKV 82
>sp|C3K3D3|BETA_PSEFS Choline dehydrogenase OS=Pseudomonas fluorescens (strain SBW25)
GN=betA PE=3 SV=1
Length = 567
Score = 249 bits (637), Expect = 5e-65, Method: Compositional matrix adjust.
Identities = 170/485 (35%), Positives = 251/485 (51%), Gaps = 40/485 (8%)
Query: 383 VSCLLSPVLGGTSVLNGMMYIRGSRADYDNWAK-AGNPGWSYQDVLPYFLKSEDNQQATM 441
+ C LGG+S++NGM YIRG+ DYDNWAK G W+Y D LPYF K+E +
Sbjct: 79 MECGRGKGLGGSSLINGMCYIRGNAMDYDNWAKLPGLENWTYLDCLPYFRKAETRD---I 135
Query: 442 MDQGFHGVGGYLTVTQFPY-HPPLSHSILQGAMELGMP-VRDLNGVSHTGFM-IAQTTTR 498
+HG G ++VT + PL H++++ ++ G P DLNG GF + +T T+
Sbjct: 136 GPNDYHGGEGPVSVTTPKAGNNPLFHAMVEAGVQAGYPRTDDLNGYQQEGFGPMDRTVTK 195
Query: 499 NGSRLSTSKAFLRPIISRNNLHILLNTTVTRVIVDPLTKAAIGVEFLTNGRLERLQAK-- 556
NG R ST++ +L R+ L I+ + +V+ + K A+GV +L ER++A+
Sbjct: 196 NGRRASTARGYLDTAKKRSTLTIVTHALTDKVLFE--GKRAVGVRYLIGAAEERVEARAR 253
Query: 557 NEVIVCAGAVDSPRILLLSGIGPREELRRLNIAPIHDLPGVGKNLHNHVAHFLNFFINDT 616
EV+VC+GA+ SP++L SG+GP + L L+I +HDLPGVG+NL +H+ +L +
Sbjct: 254 KEVLVCSGAIASPQLLQRSGVGPAKLLESLDIPVVHDLPGVGENLQDHLELYLQYACTQP 313
Query: 617 DTTALNWATAMEYLLFRDGLMSGTGLS-----EVTGFVHSRLSNPAEDNPDLQIFFSGYL 671
+ + + + + L +GTG+ E GF+ SR P D P++Q F
Sbjct: 314 VSLYPSLLWYNQPAIGAEWLFNGTGIGASNQFEAGGFIRSR---PEFDWPNIQYHFLPVA 370
Query: 672 ANCARTGQVGERSDGMNNSTPVPQRTISIFPTVLHPKSRGYLTLKDNNPQTPPLIFARYL 731
N N S V + + SRG + LK NP+ P I Y+
Sbjct: 371 IN-------------YNGSNGVKEHGFQAHMGSMRSPSRGRVQLKSKNPRDYPSILFNYM 417
Query: 732 THPDDVKTLVDGIKIAIRLTQTAALQKYGFRIDTTPVKGCENLPFGCDAYWECAIRRNTG 791
D + DGI++ + Q AL Y R + +P + D + IR +
Sbjct: 418 ATEQDWQEFRDGIRLTREIMQQPALDPYRGR-EISP-----GIDVQTDEQLDKFIREHAE 471
Query: 792 AENHQAGSCKMGPASDPSAVVSPELKVHGVDRLRVVDCSIMPAVTSGNTNAPAIMIAEKA 851
H + SCKMG +D AVV E +VHG+ LRVVD SIMP +T+GN NAP IMIAEK
Sbjct: 472 TAFHPSCSCKMG--TDEMAVVDGEGRVHGMQGLRVVDASIMPIITTGNLNAPTIMIAEKI 529
Query: 852 SDLIK 856
+D I+
Sbjct: 530 ADKIR 534
Score = 50.1 bits (118), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 27/54 (50%), Positives = 35/54 (64%), Gaps = 2/54 (3%)
Query: 283 IRRNTGAENHQAGSCKMGPASDPSAVVSPELKVHGVDRLRVVDCSIMPAVTSGS 336
IR + H + SCKMG +D AVV E +VHG+ LRVVD SIMP +T+G+
Sbjct: 466 IREHAETAFHPSCSCKMG--TDEMAVVDGEGRVHGMQGLRVVDASIMPIITTGN 517
Score = 49.3 bits (116), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 50/87 (57%), Gaps = 8/87 (9%)
Query: 138 RDYDFIVIGGGSSGAVVANRLSEVPNWRVLLIEAGGDE---PTGTQIP-SMFLNFLGSSI 193
++YD+I++G GS+G +A RL+E VLL+EAGG + TQ+P ++ G
Sbjct: 3 QEYDYIIVGAGSAGNTLATRLTEDEGVTVLLLEAGGPDYRLDFRTQMPAALAFPLQGRRY 62
Query: 194 DYGYKTEPEDMACLNNEERRCNWPRGK 220
++ Y+T+PE + + RR RGK
Sbjct: 63 NWAYETDPEP----HMDGRRMECGRGK 85
>sp|C3MIE4|BETA_RHISN Choline dehydrogenase OS=Rhizobium sp. (strain NGR234) GN=betA PE=3
SV=1
Length = 549
Score = 249 bits (636), Expect = 6e-65, Method: Compositional matrix adjust.
Identities = 161/480 (33%), Positives = 240/480 (50%), Gaps = 50/480 (10%)
Query: 390 VLGGTSVLNGMMYIRGSRADYDNWAKAGNPGWSYQDVLPYFLKSEDNQQATMMDQGFHGV 449
V+GG+S +NGM+Y+RG D+D W + G GW+Y DVLPYF + E + + G+ G
Sbjct: 82 VIGGSSSINGMVYVRGHAEDFDRWEQLGAKGWAYADVLPYFKRMEHSHGG---EDGWRGT 138
Query: 450 GGYLTVTQFPYHPPLSHSILQGAMELGMPVRD-LNGVSHTGFMIAQTTTRNGSRLSTSKA 508
G L V + P PL H+ ++ + G + D NG GF + + TT G R S + A
Sbjct: 139 DGPLHVQRGPVKNPLFHAFVEAGKQAGFEMTDDYNGSKQEGFGLMEQTTWRGRRWSAASA 198
Query: 509 FLRPIISRNNLHILLNTTVTRVIVDPLTKAAIGVEFLTNGRLERLQAKNEVIVCAGAVDS 568
+L+P + R N+ L+ +++++ A GVE GR+E ++A EVIV A + +S
Sbjct: 199 YLKPALKRPNVQ-LIRCFARKIVIE--NGRATGVEIERGGRIEVVKANREVIVSASSFNS 255
Query: 569 PRILLLSGIGPREELRRLNIAPIHDLPGVGKNLHNHVAHFLNFFINDTDTTALNW----- 623
P++L+LSGIGP L+ L I D PGVG+NL +H+ + I+ + +W
Sbjct: 256 PKLLMLSGIGPAAHLKDLGIDVKVDRPGVGQNLQDHMEFYFQQ-ISTKPVSLYSWLPWFW 314
Query: 624 --ATAMEYLLFRDGLMSGTGLS---EVTGFVHSRLSNPAEDNPDLQIFFSGYLANCARTG 678
++L F+ GL G+S E F+ S P PD+Q F
Sbjct: 315 QGVAGAQWLFFKSGL----GISNQFEACAFLRS---APGVKQPDIQYHFL---------- 357
Query: 679 QVGERSDGMNNSTPVPQRTISIFPTVLHPKSRGYLTLKDNNPQTPPLIFARYLTHPDDVK 738
V R DG + + KSRG +TL+ ++P+ P+I Y++HP+D +
Sbjct: 358 PVAIRYDGKAAAN---THGFQVHVGYNLSKSRGSVTLRASDPKADPVIRFNYMSHPEDWE 414
Query: 739 TLVDGIKIAIRLTQTAALQKYGFRIDTTPVKGCENLP---FGCDAYWECAIRRNTGAENH 795
+++ + A +Y +G E P D + +R + + H
Sbjct: 415 KFRHCVRLTREIFGQKAFDQY---------RGPEIQPGERVQTDEEIDAFLREHLESAYH 465
Query: 796 QAGSCKMGPASDPSAVVSPELKVHGVDRLRVVDCSIMPAVTSGNTNAPAIMIAEKASDLI 855
G+CKMG DP AVV PE +V GVD LRV D SI P VT GN NAP+IM EKA+D I
Sbjct: 466 PCGTCKMGSKDDPMAVVDPETRVIGVDGLRVADSSIFPHVTYGNLNAPSIMTGEKAADHI 525
Score = 57.4 bits (137), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 28/54 (51%), Positives = 34/54 (62%)
Query: 283 IRRNTGAENHQAGSCKMGPASDPSAVVSPELKVHGVDRLRVVDCSIMPAVTSGS 336
+R + + H G+CKMG DP AVV PE +V GVD LRV D SI P VT G+
Sbjct: 456 LREHLESAYHPCGTCKMGSKDDPMAVVDPETRVIGVDGLRVADSSIFPHVTYGN 509
Score = 47.8 bits (112), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 34/83 (40%), Positives = 50/83 (60%), Gaps = 6/83 (7%)
Query: 141 DFIVIGGGSSGAVVANRLSEVPNWRVLLIEAGG-DEPTGTQIPSMFLNFLG-SSIDYGYK 198
D+I+IG GS+G+ +A+RLSE V+++E GG D Q+P+ + + ++GY
Sbjct: 4 DYIIIGSGSAGSALAHRLSEDSRNSVIVLEFGGTDIGPFIQMPAALAWPMSMNRYNWGYL 63
Query: 199 TEPEDMACLNNEERRCNWPRGKV 221
+EPE LNN RR PRGKV
Sbjct: 64 SEPE--PHLNN--RRITAPRGKV 82
>sp|A6U6Y8|BETA_SINMW Choline dehydrogenase OS=Sinorhizobium medicae (strain WSM419)
GN=betA PE=3 SV=1
Length = 549
Score = 249 bits (636), Expect = 7e-65, Method: Compositional matrix adjust.
Identities = 162/478 (33%), Positives = 242/478 (50%), Gaps = 46/478 (9%)
Query: 390 VLGGTSVLNGMMYIRGSRADYDNWAKAGNPGWSYQDVLPYFLKSEDNQQATMMDQGFHGV 449
V+GG+S +NGM+Y+RG D+D W + G GW+Y DVLPY+ + E + ++G+ G
Sbjct: 82 VIGGSSSINGMVYVRGHSEDFDRWEELGAKGWAYADVLPYYKRMEHSHGG---EEGWRGT 138
Query: 450 GGYLTVTQFPYHPPLSHSILQGAMELGMPV-RDLNGVSHTGFMIAQTTTRNGSRLSTSKA 508
G L V + P PL H+ ++ + G V D NG GF + + TT G R S + A
Sbjct: 139 DGPLHVQRGPVKNPLFHAFIEAGKQAGFEVTEDYNGSKQEGFGLMEQTTWRGRRWSAASA 198
Query: 509 FLRPIISRNNLHILLNTTVTRVIVDPLTKAAIGVEFLTNGRLERLQAKNEVIVCAGAVDS 568
+LRP + R N+ L+ +++++ A GVE GR E ++A EVIV A + +S
Sbjct: 199 YLRPALKRPNVE-LVRCFARKIVIE--NGRATGVEIERGGRTEVVRANREVIVSASSFNS 255
Query: 569 PRILLLSGIGPREELRRLNIAPIHDLPGVGKNLHNHVAHFLNFFINDTDT------TALN 622
P++L+LSGIGP L+ + I D PGVG+NL +H + F+ T + L
Sbjct: 256 PKLLMLSGIGPAAHLQEMGIDVKADRPGVGQNLQDH----MEFYFQQVSTKPVSLYSWLP 311
Query: 623 W----ATAMEYLLFRDGLMSGTGLSEVTGFVHSRLSNPAEDNPDLQIFFSGYLANCARTG 678
W ++L F+ GL G+S S P PD+Q F + G
Sbjct: 312 WFWQGVAGAQWLFFKRGL----GISNQFESCAFLRSAPGVKQPDIQYHF--LPVAISYDG 365
Query: 679 QVGERSDGMNNSTPVPQRTISIFPTVLHPKSRGYLTLKDNNPQTPPLIFARYLTHPDDVK 738
+ +S G + KSRG +TL+ ++P+ P+I Y++HP+D +
Sbjct: 366 KAAAKSHGFQ-----------VHVGYNLSKSRGDVTLRSSDPKADPVIRFNYMSHPEDWE 414
Query: 739 TLVDGIKIAIRLTQTAALQKYGFRIDTTP-VKGCENLPFGCDAYWECAIRRNTGAENHQA 797
+ +RLT+ QK F + P ++ E + D + +R + + H
Sbjct: 415 KF----RHCVRLTREIFGQK-AFDLYRGPEIQPGEKVR--TDEEIDAFLREHLESAYHPC 467
Query: 798 GSCKMGPASDPSAVVSPELKVHGVDRLRVVDCSIMPAVTSGNTNAPAIMIAEKASDLI 855
G+CKMG DP AVV PE +V GVD LRV D SI P +T GN NAP+IM EKA+D I
Sbjct: 468 GTCKMGAKDDPMAVVDPETRVIGVDGLRVADSSIFPHITYGNLNAPSIMTGEKAADHI 525
Score = 56.6 bits (135), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 27/54 (50%), Positives = 34/54 (62%)
Query: 283 IRRNTGAENHQAGSCKMGPASDPSAVVSPELKVHGVDRLRVVDCSIMPAVTSGS 336
+R + + H G+CKMG DP AVV PE +V GVD LRV D SI P +T G+
Sbjct: 456 LREHLESAYHPCGTCKMGAKDDPMAVVDPETRVIGVDGLRVADSSIFPHITYGN 509
Score = 46.2 bits (108), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/83 (40%), Positives = 49/83 (59%), Gaps = 6/83 (7%)
Query: 141 DFIVIGGGSSGAVVANRLSEVPNWRVLLIEAGG-DEPTGTQIPSMFLNFLG-SSIDYGYK 198
DF++IG GS+G+ +A RLSE V+++E GG D Q+P+ + + ++GY
Sbjct: 4 DFVIIGSGSAGSALAYRLSEDGANSVVVLEFGGSDVGPFIQMPAALAWPMSMNRYNWGYL 63
Query: 199 TEPEDMACLNNEERRCNWPRGKV 221
+EPE LNN RR PRGKV
Sbjct: 64 SEPE--PNLNN--RRITAPRGKV 82
>sp|Q8UH55|BETA_AGRT5 Choline dehydrogenase OS=Agrobacterium tumefaciens (strain C58 /
ATCC 33970) GN=betA PE=3 SV=2
Length = 549
Score = 249 bits (636), Expect = 7e-65, Method: Compositional matrix adjust.
Identities = 164/496 (33%), Positives = 248/496 (50%), Gaps = 54/496 (10%)
Query: 390 VLGGTSVLNGMMYIRGSRADYDNWAKAGNPGWSYQDVLPYFLKSEDNQQATMMDQGFHGV 449
V+GG+S +NG++Y+RG D++ W + G GW+Y DVLPYF + E + ++G+ G
Sbjct: 82 VIGGSSSINGLVYVRGHAEDFNRWEELGAQGWAYADVLPYFKRMEHSHGG---EEGWRGT 138
Query: 450 GGYLTVTQFPYHPPLSHSILQGAMELGMPVRD-LNGVSHTGFMIAQTTTRNGSRLSTSKA 508
G L V + P PL H+ +Q + G + D NG GF + + T NG R S + A
Sbjct: 139 DGPLHVQRGPVSNPLFHAFIQAGAQAGFELTDDYNGSKQEGFGLMEQTIHNGRRWSAANA 198
Query: 509 FLRPIISRNNLHILLNTTVTRVIVDPLTKAAIGVEFLTNGRLERLQAKNEVIVCAGAVDS 568
+L+P + R N+ L+N +VI++ A+GVE GR+E ++A EVIV A + +S
Sbjct: 199 YLKPALKRGNV-TLVNGFARKVIIE--NGRAVGVEIERRGRVETVKANREVIVSASSFNS 255
Query: 569 PRILLLSGIGPREELRRLNIAPIHDLPGVGKNLHNHVAHFLNFFINDTDT------TALN 622
P++L+LSGIGP L+ + I D PGVG NL +H + F+ T + L
Sbjct: 256 PKLLMLSGIGPAAHLKDMGIEVKADRPGVGANLQDH----MEFYFQQVSTKPVSLYSWLP 311
Query: 623 W----ATAMEYLLFRDGLMSGTGLSEVTGFVHSRLSNPAEDNPDLQIFFSGYLANCARTG 678
W ++LL + GL + E F+ S P PD+Q F + G
Sbjct: 312 WFWQGVAGAQWLLSKGGLGASNQF-EACAFLRS---APGLKQPDIQYHF--LPVAISYDG 365
Query: 679 QVGERSDGMNNSTPVPQRTISIFPTVLHPKSRGYLTLKDNNPQTPPLIFARYLTHPDDVK 738
+ +S G +S KSRG +TL+ +P P+I Y++HP+D +
Sbjct: 366 KAAAKSHGFQAHVGY---NLS--------KSRGNVTLRSADPHDDPVIRFNYMSHPEDWE 414
Query: 739 TLVDGIKIAIRLTQTAALQKYGFRIDTTPVKGCENLPFGCDAYWECAIRRNTGAENHQAG 798
+ +RLT+ QK ++ EN+ D + +R + + H G
Sbjct: 415 KF----RHCVRLTREIFGQKAFDDFRGPEIQPGENIE--TDEQIDAFLREHLESAYHPCG 468
Query: 799 SCKMGPASDPSAVVSPELKVHGVDRLRVVDCSIMPAVTSGNTNAPAIMIAEKASDLI--- 855
+C+MG +DP AVV PE +V GV+ LRV D SI P VT GN N P+IM EKA+D I
Sbjct: 469 TCRMGDRNDPMAVVDPECRVIGVEGLRVADSSIFPHVTYGNLNGPSIMTGEKAADHILGK 528
Query: 856 -------KQQWIGKRA 864
++ W+ RA
Sbjct: 529 TPLPRSNQEPWVNPRA 544
Score = 53.5 bits (127), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 26/54 (48%), Positives = 35/54 (64%)
Query: 283 IRRNTGAENHQAGSCKMGPASDPSAVVSPELKVHGVDRLRVVDCSIMPAVTSGS 336
+R + + H G+C+MG +DP AVV PE +V GV+ LRV D SI P VT G+
Sbjct: 456 LREHLESAYHPCGTCRMGDRNDPMAVVDPECRVIGVEGLRVADSSIFPHVTYGN 509
Score = 51.2 bits (121), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 32/83 (38%), Positives = 49/83 (59%), Gaps = 6/83 (7%)
Query: 141 DFIVIGGGSSGAVVANRLSEVPNWRVLLIEAGG-DEPTGTQIPSMFLNFLG-SSIDYGYK 198
D++++G GS+G+ +A RLSE + V++IEAGG D Q+P+ + ++GY
Sbjct: 4 DYVIVGSGSAGSAIAYRLSEDGRYSVIVIEAGGSDFGPFIQMPAALAWPMSMKRYNWGYL 63
Query: 199 TEPEDMACLNNEERRCNWPRGKV 221
+EPE N + RR PRGKV
Sbjct: 64 SEPEP----NLDNRRITAPRGKV 82
>sp|P54223|BETA_RHIME Choline dehydrogenase OS=Rhizobium meliloti (strain 1021) GN=betA
PE=3 SV=2
Length = 549
Score = 248 bits (632), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 160/478 (33%), Positives = 243/478 (50%), Gaps = 46/478 (9%)
Query: 390 VLGGTSVLNGMMYIRGSRADYDNWAKAGNPGWSYQDVLPYFLKSEDNQQATMMDQGFHGV 449
V+GG+S +NGM+Y+RG D++ W + G GW+Y DVLPY+ + E + ++G+ G
Sbjct: 82 VIGGSSSINGMVYVRGHSEDFNRWEELGAQGWAYADVLPYYKRMEHSHGG---EEGWRGT 138
Query: 450 GGYLTVTQFPYHPPLSHSILQGAMELGMPV-RDLNGVSHTGFMIAQTTTRNGSRLSTSKA 508
G L V + P PL H+ ++ E G V D NG GF + + TT G R S + A
Sbjct: 139 DGPLHVQRGPVKNPLFHAFIEAGKEAGFEVTEDYNGSKQEGFGLMEQTTWRGRRWSAASA 198
Query: 509 FLRPIISRNNLHILLNTTVTRVIVDPLTKAAIGVEFLTNGRLERLQAKNEVIVCAGAVDS 568
+LRP + R N+ L+ +++++ A GVE GR+E ++A EVIV A + +S
Sbjct: 199 YLRPALKRPNVE-LIRCFARKIVIE--NGRATGVEIERGGRIEVVKANREVIVSASSFNS 255
Query: 569 PRILLLSGIGPREELRRLNIAPIHDLPGVGKNLHNHVAHFLNFFINDTDT------TALN 622
P++L+LSGIGP L+ + I D PGVG+NL +H + F+ T + L
Sbjct: 256 PKLLMLSGIGPAAHLKEMGIDVKVDRPGVGQNLQDH----MEFYFQQVSTKPVSLYSWLP 311
Query: 623 W----ATAMEYLLFRDGLMSGTGLSEVTGFVHSRLSNPAEDNPDLQIFFSGYLANCARTG 678
W ++L F+ GL G+S S P PD+Q F + G
Sbjct: 312 WFWQGVAGAQWLFFKRGL----GISNQFESCAFLRSAPGVKQPDIQYHF--LPVAISYDG 365
Query: 679 QVGERSDGMNNSTPVPQRTISIFPTVLHPKSRGYLTLKDNNPQTPPLIFARYLTHPDDVK 738
+ +S G + KSRG ++L+ ++P+ P+I Y++HP+D +
Sbjct: 366 KAAAKSHGFQ-----------VHVGYNLSKSRGNVSLRSSDPKADPVIRFNYMSHPEDWE 414
Query: 739 TLVDGIKIAIRLTQTAALQKYGFRIDTTP-VKGCENLPFGCDAYWECAIRRNTGAENHQA 797
+ +RLT+ QK F + P ++ E + D + +R + + H
Sbjct: 415 KF----RHCVRLTREIFGQK-AFDLYRGPEIQPGEKVQ--TDEEIDGFLREHLESAYHPC 467
Query: 798 GSCKMGPASDPSAVVSPELKVHGVDRLRVVDCSIMPAVTSGNTNAPAIMIAEKASDLI 855
G+CKMG DP AVV PE +V GVD LRV D SI P +T GN NAP+IM EK++D I
Sbjct: 468 GTCKMGAKDDPMAVVDPETRVIGVDGLRVADSSIFPHITYGNLNAPSIMTGEKSADHI 525
Score = 56.6 bits (135), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 27/54 (50%), Positives = 34/54 (62%)
Query: 283 IRRNTGAENHQAGSCKMGPASDPSAVVSPELKVHGVDRLRVVDCSIMPAVTSGS 336
+R + + H G+CKMG DP AVV PE +V GVD LRV D SI P +T G+
Sbjct: 456 LREHLESAYHPCGTCKMGAKDDPMAVVDPETRVIGVDGLRVADSSIFPHITYGN 509
Score = 47.0 bits (110), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 34/83 (40%), Positives = 49/83 (59%), Gaps = 6/83 (7%)
Query: 141 DFIVIGGGSSGAVVANRLSEVPNWRVLLIEAGG-DEPTGTQIPSMFLNFLG-SSIDYGYK 198
DF++IG GS+G+ +A RLSE V+++E GG D Q+P+ + + ++GY
Sbjct: 4 DFVIIGSGSAGSALAYRLSEDGRNSVIVLEFGGSDVGPFIQMPAALAWPMSMNRYNWGYL 63
Query: 199 TEPEDMACLNNEERRCNWPRGKV 221
+EPE LNN RR PRGKV
Sbjct: 64 SEPE--PNLNN--RRITAPRGKV 82
>sp|Q8YFY2|BETA_BRUME Choline dehydrogenase OS=Brucella melitensis biotype 1 (strain 16M
/ ATCC 23456 / NCTC 10094) GN=betA PE=3 SV=2
Length = 549
Score = 247 bits (630), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 165/485 (34%), Positives = 249/485 (51%), Gaps = 47/485 (9%)
Query: 385 CLLSP---VLGGTSVLNGMMYIRGSRADYDNWAKAGNPGWSYQDVLPYFLKSEDNQQATM 441
L++P VLGG+S +NGM+Y+RG D+D+W+++G GW+Y DVLPYF + E++Q
Sbjct: 74 SLVTPRGKVLGGSSSINGMVYVRGHACDFDHWSQSGARGWAYADVLPYFKRMENSQGG-- 131
Query: 442 MDQGFHGVGGYLTVTQFPYHPPLSHSILQGAMELGMPVRD-LNGVSHTGFMIAQTTTRNG 500
+G+ G G L V + PL H+ ++ + G V D NG GF + T NG
Sbjct: 132 -QEGWRGTNGPLYVQRGKRDNPLFHAFVEAGHQAGFEVTDDYNGEKQEGFGPMEQTIHNG 190
Query: 501 SRLSTSKAFLRPIISRNNLHILLNTTVTRVIVDPLTKAAIGVEFLTNGRLERLQAKNEVI 560
R S + A+L+P + R N+ L+ +++++ K A+GVE ++A+ EVI
Sbjct: 191 RRWSAANAYLKPALKRPNVK-LVKGFARKIVLE--GKRAVGVEIEAGRTFSTIRARREVI 247
Query: 561 VCAGAVDSPRILLLSGIGPREELRRLNIAPIHDLPGVGKNLHNHVAHFLNFFINDTDT-- 618
+ A +++SP++L+LSGIGP L+ I + D PGVG+NL +H+ ++ T
Sbjct: 248 IAASSINSPKLLMLSGIGPAAHLKEHGIDLVADRPGVGQNLQDHLEVYIQQECTQPITLY 307
Query: 619 TALNWAT----AMEYLLFRDGLMSGTGLSEVTGFVHSRLSNPAEDNPDLQIFFSGYLANC 674
+ LN + +E+LLF+ G T E FV S+ + PD+Q F L
Sbjct: 308 SKLNLFSKARIGVEWLLFKTG-DGATNHFESAAFVRSKA---GVEYPDIQYHF---LPVA 360
Query: 675 AR-TGQVGERSDGMNNSTPVPQRTISIFPTVLHPKSRGYLTLKDNNPQTPPLIFARYLTH 733
R G+ +S G P R+ KSRG +TL+ NP+ P+I Y++H
Sbjct: 361 IRYDGKAAAQSHGFQAHVG-PMRS----------KSRGSVTLRSANPREKPVIKFNYMSH 409
Query: 734 PDDVKTLVDGIKIAIRLTQTAALQKYGFRIDTTPVKGCENLP---FGCDAYWECAIRRNT 790
DD +++ + AA P +G E P D + IR +
Sbjct: 410 EDDWADFRHCVRLTREIFGQAAFD---------PYRGAEIQPGAHVQTDDEIDNFIREHV 460
Query: 791 GAENHQAGSCKMGPASDPSAVVSPELKVHGVDRLRVVDCSIMPAVTSGNTNAPAIMIAEK 850
+ H G+CKMG DP AVV PE +V GV+ LRV D SI P +T+GN N P+IM+ EK
Sbjct: 461 ESAFHPCGTCKMGAVDDPMAVVDPECRVIGVEGLRVADSSIFPRITNGNLNGPSIMVGEK 520
Query: 851 ASDLI 855
AS I
Sbjct: 521 ASGHI 525
Score = 56.2 bits (134), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/54 (50%), Positives = 35/54 (64%)
Query: 283 IRRNTGAENHQAGSCKMGPASDPSAVVSPELKVHGVDRLRVVDCSIMPAVTSGS 336
IR + + H G+CKMG DP AVV PE +V GV+ LRV D SI P +T+G+
Sbjct: 456 IREHVESAFHPCGTCKMGAVDDPMAVVDPECRVIGVEGLRVADSSIFPRITNGN 509
Score = 42.4 bits (98), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 47/85 (55%), Gaps = 10/85 (11%)
Query: 141 DFIVIGGGSSGAVVANRLSEVPNWRVLLIEAG-GDEPTGTQIPSMF---LNFLGSSIDYG 196
DF++IG GS+G+ +A RLSE + V++IE G D Q+P+ +N + D+G
Sbjct: 4 DFVIIGSGSAGSAMAYRLSEDGRYSVIVIEYGVPDVGPLIQMPAALSFPMNM--ETYDWG 61
Query: 197 YKTEPEDMACLNNEERRCNWPRGKV 221
+ +EPE + R PRGKV
Sbjct: 62 FSSEPEP----HIRGRSLVTPRGKV 82
>sp|A6X2G7|BETA_OCHA4 Choline dehydrogenase OS=Ochrobactrum anthropi (strain ATCC 49188 /
DSM 6882 / NCTC 12168) GN=betA PE=3 SV=1
Length = 549
Score = 246 bits (627), Expect = 7e-64, Method: Compositional matrix adjust.
Identities = 162/489 (33%), Positives = 246/489 (50%), Gaps = 55/489 (11%)
Query: 385 CLLSP---VLGGTSVLNGMMYIRGSRADYDNWAKAGNPGWSYQDVLPYFLKSEDNQQATM 441
L++P VLGG+S +NGM+Y+RG DYD+W+++G GW+Y DVLPYF + E++
Sbjct: 74 SLVTPRGKVLGGSSSINGMVYVRGHARDYDHWSESGARGWAYADVLPYFKRMENSSGG-- 131
Query: 442 MDQGFHGVGGYLTVTQFPYHPPLSHSILQGAMELGMPV-RDLNGVSHTGFMIAQTTTRNG 500
+G+ G G L + + PL H+ ++ E G V D NG GF + T NG
Sbjct: 132 -QEGWRGTNGPLYIQRGKRDNPLFHAFVEAGHEAGFEVTEDYNGEKQEGFGPMEQTIHNG 190
Query: 501 SRLSTSKAFLRPIISRNNLHILLNTTVTRVIVDPLTKAAIGVEFLTNGRLERLQAKNEVI 560
R S + A+L+P + R N+ L+ +++++ K A+GVE ++A+ EVI
Sbjct: 191 RRWSAANAYLKPALKRPNVK-LVKGLARKIVLE--GKRAVGVEIEAGRSFSTIRARREVI 247
Query: 561 VCAGAVDSPRILLLSGIGPREELRRLNIAPIHDLPGVGKNLHNHVAHFLNFFINDTDTTA 620
+ A +++SP++L+LSGIGP +L+ I + D PGVG+NL +H L +I T
Sbjct: 248 IAASSINSPKLLMLSGIGPAAQLKEHGIEVVADRPGVGQNLQDH----LEVYIQQECTQP 303
Query: 621 LNWATAM----------EYLLFRDGLMSGTGLSEVTGFVHSRLSNPAEDNPDLQIFFSGY 670
+ + + E+L F+ G T E F+ S+ + PD+Q F
Sbjct: 304 ITLYSKLNLFSKAKIGAEWLFFKTG-DGATNHFESAAFLRSKA---GVEYPDIQYHF--- 356
Query: 671 LANCAR-TGQVGERSDGMNNSTPVPQRTISIFPTVLHPKSRGYLTLKDNNPQTPPLIFAR 729
L R G+ +S G P R+ KSRG +TL+ NP+ P+I
Sbjct: 357 LPVAIRYDGKAAAQSHGFQAHVG-PMRS----------KSRGSVTLRSANPREKPVIKFN 405
Query: 730 YLTHPDDVKTLVDGIKIAIRLTQTAALQKYGFRIDTTPVKGCENLP---FGCDAYWECAI 786
Y++H DD +++ + AA P +G E P D + I
Sbjct: 406 YMSHEDDWADFRHCVRLTREIFGQAAF---------NPYRGAEIQPGAHVQSDDEIDNFI 456
Query: 787 RRNTGAENHQAGSCKMGPASDPSAVVSPELKVHGVDRLRVVDCSIMPAVTSGNTNAPAIM 846
+ + + H G+CKMG DP AVV E +V GV+ LRV D SI P +T+GN N P+IM
Sbjct: 457 KEHVESAFHPCGTCKMGAVDDPMAVVDAECRVIGVEGLRVADSSIFPRITNGNLNGPSIM 516
Query: 847 IAEKASDLI 855
+ EKASD I
Sbjct: 517 VGEKASDHI 525
Score = 52.0 bits (123), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/54 (46%), Positives = 34/54 (62%)
Query: 283 IRRNTGAENHQAGSCKMGPASDPSAVVSPELKVHGVDRLRVVDCSIMPAVTSGS 336
I+ + + H G+CKMG DP AVV E +V GV+ LRV D SI P +T+G+
Sbjct: 456 IKEHVESAFHPCGTCKMGAVDDPMAVVDAECRVIGVEGLRVADSSIFPRITNGN 509
Score = 43.1 bits (100), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 46/85 (54%), Gaps = 10/85 (11%)
Query: 141 DFIVIGGGSSGAVVANRLSEVPNWRVLLIEAG-GDEPTGTQIPSMF---LNFLGSSIDYG 196
DF++IG GS+G+ +A RLSE + V++IE G D Q+P+ +N + D+G
Sbjct: 4 DFVIIGSGSAGSAMAYRLSEDGRYSVIVIEYGVPDVGPLIQMPAALSFPMNM--ETYDWG 61
Query: 197 YKTEPEDMACLNNEERRCNWPRGKV 221
+ TEPE R PRGKV
Sbjct: 62 FSTEPEPHIG----GRSLVTPRGKV 82
>sp|Q13NG7|BETA_BURXL Choline dehydrogenase OS=Burkholderia xenovorans (strain LB400)
GN=betA PE=3 SV=1
Length = 561
Score = 244 bits (623), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 168/484 (34%), Positives = 246/484 (50%), Gaps = 40/484 (8%)
Query: 383 VSCLLSPVLGGTSVLNGMMYIRGSRADYDNWA-KAGNPGWSYQDVLPYFLKSEDNQQATM 441
+ C LGG+S++NGM YIRG+ DYD WA AG W+Y D LPYF K+E
Sbjct: 80 MECGRGKGLGGSSLINGMCYIRGNALDYDGWAAHAGLENWTYLDCLPYFRKAETRDIGA- 138
Query: 442 MDQGFHGVGGYLTVT-QFPYHPPLSHSILQGAMELGMP-VRDLNGVSHTGFM-IAQTTTR 498
+HG G + VT P + PL ++++ ++ G P DLNG GF + +T T
Sbjct: 139 --NAYHGGDGPVHVTTSKPGNNPLFAAMVEAGVQAGFPRTDDLNGYQQEGFGPMDRTVTA 196
Query: 499 NGSRLSTSKAFLRPIISRNNLHILLNTTVTRVIVDPLTKAAIGVEFLTNGRLERLQAKNE 558
NG R ST++ +L +R NL I+ + RV+ K A+GV +L +G + QA+ E
Sbjct: 197 NGRRASTARGYLDRAKARPNLTIVTHAVTDRVLFS--GKRAVGVSYLHHGNVLNAQARRE 254
Query: 559 VIVCAGAVDSPRILLLSGIGPREELRRLNIAPIHDLPGVGKNLHNHVAHFLNFFINDTDT 618
V+VC+GA+ SP++L SG+G LR L++ +HDLPGVG+NL +H+ ++ + + +
Sbjct: 255 VLVCSGAIASPQLLQRSGVGRSTWLRELDVPLVHDLPGVGENLQDHLEMYIQYECKEPVS 314
Query: 619 T--ALNW----ATAMEYLLFRDGLMSGTGLSEVTGFVHSRLSNPAEDNPDLQIFFSGYLA 672
AL W A +E++L G+ + E GF+ +R +P P++Q F
Sbjct: 315 LYPALQWWNQPAIGLEWMLNGTGIGASNQF-EAGGFIRTRDDDPW---PNIQYHFLPVAI 370
Query: 673 NCARTGQVGERSDGMNNSTPVPQRTISIFPTVLHPKSRGYLTLKDNNPQTPPLIFARYLT 732
N N S + + SRG + L +P P I Y+
Sbjct: 371 N-------------YNGSNAIRMHGFQAHVGSMRSPSRGRVKLTSRDPNAHPGILFNYMA 417
Query: 733 HPDDVKTLVDGIKIAIRLTQTAALQKYGFRIDTTPVKGCENLPFGCDAYWECAIRRNTGA 792
P D + DGI+I + + AL +Y R + P G E D + +R
Sbjct: 418 DPLDWREFRDGIRITREIMRQPALDRYRGR-ELNP--GAE---LTTDEQLDSFVRMRAET 471
Query: 793 ENHQAGSCKMGPASDPSAVVSPELKVHGVDRLRVVDCSIMPAVTSGNTNAPAIMIAEKAS 852
H + SCKMG D AVV E +VHG+ LRVVD SIMP +T+GN NAP IM+AEK +
Sbjct: 472 AFHPSCSCKMG--YDDMAVVDNEGRVHGMQGLRVVDASIMPRITTGNLNAPTIMLAEKIA 529
Query: 853 DLIK 856
D I+
Sbjct: 530 DRIR 533
Score = 53.5 bits (127), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 34/86 (39%), Positives = 52/86 (60%), Gaps = 8/86 (9%)
Query: 139 DYDFIVIGGGSSGAVVANRLSEVPNWRVLLIEAGGDE---PTGTQIPSMFLNFL-GSSID 194
+YD+I++G GS+G V+A+RL+E + VLL+EAGG + TQ+P+ L G +
Sbjct: 5 EYDYIIVGAGSAGNVLASRLAEDADVTVLLLEAGGPDYRFDFRTQMPAALAYPLQGRRYN 64
Query: 195 YGYKTEPEDMACLNNEERRCNWPRGK 220
+ Y+T+PE +NN C RGK
Sbjct: 65 WAYETDPE--PHMNNRRMECG--RGK 86
Score = 47.0 bits (110), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 25/45 (55%), Positives = 31/45 (68%), Gaps = 2/45 (4%)
Query: 292 HQAGSCKMGPASDPSAVVSPELKVHGVDRLRVVDCSIMPAVTSGS 336
H + SCKMG D AVV E +VHG+ LRVVD SIMP +T+G+
Sbjct: 474 HPSCSCKMG--YDDMAVVDNEGRVHGMQGLRVVDASIMPRITTGN 516
Score = 33.1 bits (74), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 12/22 (54%), Positives = 20/22 (90%)
Query: 61 DYDFIVIGGGSSGAVVANRLSE 82
+YD+I++G GS+G V+A+RL+E
Sbjct: 5 EYDYIIVGAGSAGNVLASRLAE 26
>sp|Q1QXE1|BETA1_CHRSD Choline dehydrogenase OS=Chromohalobacter salexigens (strain DSM
3043 / ATCC BAA-138 / NCIMB 13768) GN=betA PE=3 SV=1
Length = 560
Score = 243 bits (620), Expect = 5e-63, Method: Compositional matrix adjust.
Identities = 160/484 (33%), Positives = 247/484 (51%), Gaps = 38/484 (7%)
Query: 383 VSCLLSPVLGGTSVLNGMMYIRGSRADYDNWAK-AGNPGWSYQDVLPYFLKSEDNQQATM 441
+ C LGG+S++NGM Y+RG+ DYDNWAK G W+Y LPYF ++E +
Sbjct: 81 MECGRGKGLGGSSLINGMCYLRGNALDYDNWAKIPGLEDWNYLQCLPYFKRAETRD---I 137
Query: 442 MDQGFHGVGGYLTV-TQFPYHPPLSHSILQGAMELGMPV-RDLNGVSHTGFM-IAQTTTR 498
+HG G ++V T + L + ++ +E G P D+NG GF + +TTT
Sbjct: 138 GPNDYHGGDGPVSVATPKEGNNELYGAFIRAGIEAGYPATEDVNGYQQEGFGPMDRTTTP 197
Query: 499 NGSRLSTSKAFLRPIISRNNLHILLNTTVTRVIVDPLTKAAIGVEFLTNGRLERLQAKNE 558
NG R ST++ +L R NL I T T +++ K A+GV + G+ +R++A+ E
Sbjct: 198 NGRRASTARGYLDIAKQRPNLTI--ETHATTDVIEFEGKRAVGVSYERKGQAQRVRARRE 255
Query: 559 VIVCAGAVDSPRILLLSGIGPREELRRLNIAPIHDLPGVGKNLHNHVAHFLNFFINDTDT 618
V++CAGA+ SP+IL SG+G E L +I +H+LPGVG+NL +H+ ++ + +
Sbjct: 256 VLLCAGAIASPQILQRSGVGNPEHLEEFDIPVVHELPGVGENLQDHLEMYIQYECKKPIS 315
Query: 619 T--ALNW----ATAMEYLLFRDGLMSGTGLSEVTGFVHSRLSNPAEDNPDLQIFFSGYLA 672
AL W E+L F G+ + E GF+ +N E+ P+LQ F
Sbjct: 316 LYPALKWYNQPKIGAEWLFFGKGIGASNQF-EAAGFIR---TNDQEEWPNLQYHFLPIAI 371
Query: 673 NCARTGQVGERSDGMNNSTPVPQRTISIFPTVLHPKSRGYLTLKDNNPQTPPLIFARYLT 732
+ N + V + SRG + L +P+ P I Y++
Sbjct: 372 S-------------YNGKSAVQAHGFQAHVGSMRSMSRGRIRLTSRDPKAAPSILFNYMS 418
Query: 733 HPDDVKTLVDGIKIAIRLTQTAALQKYGFRIDTTPVKGCENLPFGCDAYWECAIRRNTGA 792
H D + D I+I + + + +Y R + +P ++ DA + +R++
Sbjct: 419 HDKDWQEFRDAIRITREIIEQPTMDEYRGR-EISPGPNVQS-----DAELDEFVRQHAET 472
Query: 793 ENHQAGSCKMGPASDPSAVVSPELKVHGVDRLRVVDCSIMPAVTSGNTNAPAIMIAEKAS 852
H AGSCKMG A D AVV +VHG++ LRV+D SIMP + +GN NAP IMIAEK +
Sbjct: 473 AYHPAGSCKMGSADDAMAVVDGAGRVHGLEGLRVIDASIMPVIATGNLNAPTIMIAEKMA 532
Query: 853 DLIK 856
D ++
Sbjct: 533 DKVR 536
Score = 58.9 bits (141), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 36/87 (41%), Positives = 54/87 (62%), Gaps = 8/87 (9%)
Query: 138 RDYDFIVIGGGSSGAVVANRLSEVPNWRVLLIEAGGDE---PTGTQIPSMFLNFL-GSSI 193
R+YD+I+IG GS+G V+A RL+E P+ +VLL+EAGG + TQ+P+ L G
Sbjct: 5 REYDYIIIGAGSAGNVLATRLTEDPDVQVLLLEAGGPDYRFDFRTQMPAALAYPLQGKRY 64
Query: 194 DYGYKTEPEDMACLNNEERRCNWPRGK 220
++ ++T+PE +NN C RGK
Sbjct: 65 NWAFETDPE--PYMNNRRMECG--RGK 87
Score = 57.0 bits (136), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 26/54 (48%), Positives = 36/54 (66%)
Query: 283 IRRNTGAENHQAGSCKMGPASDPSAVVSPELKVHGVDRLRVVDCSIMPAVTSGS 336
+R++ H AGSCKMG A D AVV +VHG++ LRV+D SIMP + +G+
Sbjct: 466 VRQHAETAYHPAGSCKMGSADDAMAVVDGAGRVHGLEGLRVIDASIMPVIATGN 519
Score = 35.8 bits (81), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 14/23 (60%), Positives = 20/23 (86%)
Query: 60 RDYDFIVIGGGSSGAVVANRLSE 82
R+YD+I+IG GS+G V+A RL+E
Sbjct: 5 REYDYIIIGAGSAGNVLATRLTE 27
>sp|A4XPI5|BETA_PSEMY Choline dehydrogenase OS=Pseudomonas mendocina (strain ymp) GN=betA
PE=3 SV=1
Length = 565
Score = 243 bits (619), Expect = 7e-63, Method: Compositional matrix adjust.
Identities = 169/491 (34%), Positives = 249/491 (50%), Gaps = 48/491 (9%)
Query: 383 VSCLLSPVLGGTSVLNGMMYIRGSRADYDNWAKA-GNPGWSYQDVLPYFLKSEDNQQATM 441
+ C LGG+S++NGM YIRG+ D+DNWAKA G W+Y D LPYF K+E +
Sbjct: 79 MECGRGKGLGGSSLINGMCYIRGNALDFDNWAKAKGLEDWTYHDCLPYFRKAESRD---I 135
Query: 442 MDQGFHGVGGYLTVTQFPY-HPPLSHSILQGAMELGMP-VRDLNGVSHTGFM-IAQTTTR 498
+HG G ++VT + PL H++++ ++ G P DLNG GF + +T T
Sbjct: 136 GPNDYHGGDGPVSVTTPKAGNNPLFHAMVEAGVQAGYPRTDDLNGYQQEGFGPMDRTVTP 195
Query: 499 NGSRLSTSKAFLRPIISRNNLHILLNTTVTRVIVDPLTKAAIGVEFLTNGRLE--RLQAK 556
G R ST++ +L R NL I+ + T R++ D K A GV +L + +A+
Sbjct: 196 QGRRASTARGYLDQARERPNLTIVTHATTDRILFD--GKRASGVSYLIGNANDATEARAR 253
Query: 557 NEVIVCAGAVDSPRILLLSGIGPREELRRLNIAPIHDLPGVGKNLHNHVAHFLNFFINDT 616
EV++CAGA+ SP+IL SG+GP LR L+IA +H+LPGVG+NL +H+ +L +
Sbjct: 254 REVLLCAGAIASPQILQRSGVGPAALLRELDIALVHELPGVGQNLQDHLEMYLQYAC--- 310
Query: 617 DTTALNWATAMEYL---------LFRDGLMSGTGLSEVTGFVHSRLSNPAEDNPDLQIFF 667
T ++ A++ L LF + + E GF+ +R P P++Q F
Sbjct: 311 -TQPVSLYPALKLLNQPGIGAQWLFTGNGIGASNQFEAGGFIRTR---PEFAWPNIQFHF 366
Query: 668 SGYLANCARTGQVGERSDGMNNSTPVPQRTISIFPTVLHPKSRGYLTLKDNNPQTPPLIF 727
N N S V + + SRG + LK +P+ P I
Sbjct: 367 LPVAIN-------------YNGSNAVNEHGFQAHVGSMRSPSRGRIQLKSKDPRQHPSIL 413
Query: 728 ARYLTHPDDVKTLVDGIKIAIRLTQTAALQKYGFRIDTTPVKGCENLPFGCDAYWECAIR 787
Y++H D + D I+I + AL Y R + +P C++ DA + IR
Sbjct: 414 FNYMSHEQDWQEFRDAIRITREIMAQPALDSYRGR-EISPGIDCQS-----DAELDAFIR 467
Query: 788 RNTGAENHQAGSCKMGPASDPSAVVSPELKVHGVDRLRVVDCSIMPAVTSGNTNAPAIMI 847
+ H + SCKMG D AVV + +VHGV LRVVD SIMP + +GN NA IM+
Sbjct: 468 EHAETAFHPSCSCKMG--EDDMAVVDGQGRVHGVQGLRVVDASIMPEIITGNLNATTIMM 525
Query: 848 AEKASDLIKQQ 858
AEK +D I+ +
Sbjct: 526 AEKIADRIRDR 536
Score = 52.8 bits (125), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 33/86 (38%), Positives = 51/86 (59%), Gaps = 8/86 (9%)
Query: 139 DYDFIVIGGGSSGAVVANRLSEVPNWRVLLIEAGGDE---PTGTQIP-SMFLNFLGSSID 194
++D+I+IG GS+G V+A RL+E + VLL+EAGG + TQ+P ++ G +
Sbjct: 4 EFDYIIIGAGSAGNVLATRLTEDADVSVLLLEAGGPDYRLDFRTQMPAALAFPLQGRRYN 63
Query: 195 YGYKTEPEDMACLNNEERRCNWPRGK 220
+ Y+T+PE +NN C RGK
Sbjct: 64 WAYETDPE--PHMNNRRMECG--RGK 85
Score = 47.8 bits (112), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 38/112 (33%), Positives = 52/112 (46%), Gaps = 17/112 (15%)
Query: 240 QIPSMFLNFLGSSIDY-----GYKTEPEDMA--CLNNEERRCNWPRGKCA--------IR 284
Q PS+ N++ D+ + E MA L++ R P C IR
Sbjct: 408 QHPSILFNYMSHEQDWQEFRDAIRITREIMAQPALDSYRGREISPGIDCQSDAELDAFIR 467
Query: 285 RNTGAENHQAGSCKMGPASDPSAVVSPELKVHGVDRLRVVDCSIMPAVTSGS 336
+ H + SCKMG D AVV + +VHGV LRVVD SIMP + +G+
Sbjct: 468 EHAETAFHPSCSCKMG--EDDMAVVDGQGRVHGVQGLRVVDASIMPEIITGN 517
>sp|B2TCJ8|BETA_BURPP Choline dehydrogenase OS=Burkholderia phytofirmans (strain DSM
17436 / PsJN) GN=betA PE=3 SV=1
Length = 561
Score = 242 bits (617), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 168/485 (34%), Positives = 246/485 (50%), Gaps = 44/485 (9%)
Query: 383 VSCLLSPVLGGTSVLNGMMYIRGSRADYDNWA-KAGNPGWSYQDVLPYFLKSEDNQQATM 441
+ C LGG+S++NGM YIRG+ DYD WA AG W+Y D LPYF K+E
Sbjct: 80 MECGRGKGLGGSSLINGMCYIRGNALDYDGWAAHAGLENWTYLDCLPYFRKAETRDAGA- 138
Query: 442 MDQGFHGVGGYLTVT-QFPYHPPLSHSILQGAMELGMP-VRDLNGVSHTGFM-IAQTTTR 498
+HG G + VT P + PL ++++ ++ G P DLNG GF + +T T
Sbjct: 139 --NAYHGGDGPVHVTTSKPGNNPLFAAMVEAGVQAGFPRTDDLNGYQQEGFGPMDRTVTA 196
Query: 499 NGSRLSTSKAFLRPIISRNNLHILLNTTVTRVIVDPLTKAAIGVEFLTNGRLERLQAKNE 558
NG R ST++ +L +R NL I+ + RV+ K A+GV +L +G QA+ E
Sbjct: 197 NGRRASTARGYLDRAKTRPNLTIVTHAVTDRVLFS--GKRAVGVAYLHHGNAVNAQARRE 254
Query: 559 VIVCAGAVDSPRILLLSGIGPREELRRLNIAPIHDLPGVGKNLHNHVAHFLNFFINDTDT 618
V+VC+GA+ SP++L SG+G LR L++ +HDLPGVG+NL +H+ ++ + + +
Sbjct: 255 VLVCSGAIASPQLLQRSGVGRSTWLRELDVPLVHDLPGVGENLQDHLEMYIQYECKEPIS 314
Query: 619 T--ALNW----ATAMEYLLFRDGLMSGTGLSEVTGFVHSRLSNPAEDN--PDLQIFFSGY 670
AL W A +E++L G+ + E GF+ +R +D+ P++Q F
Sbjct: 315 LYPALQWWNQPAIGLEWMLKGTGIGASNQF-EAGGFIRTR-----DDDLWPNIQYHFLPV 368
Query: 671 LANCARTGQVGERSDGMNNSTPVPQRTISIFPTVLHPKSRGYLTLKDNNPQTPPLIFARY 730
N N S + + SRG + L +P P I Y
Sbjct: 369 AIN-------------YNGSNAIKMHGFQAHVGSMRSPSRGRVKLTSRDPNAHPSILFNY 415
Query: 731 LTHPDDVKTLVDGIKIAIRLTQTAALQKYGFRIDTTPVKGCENLPFGCDAYWECAIRRNT 790
+ P D + DGI+I + + AL +Y R + P G E D + +R
Sbjct: 416 MADPLDWREFRDGIRITREIMRQPALDRYRGR-ELNP--GAE---LTTDEQLDTFVRMRA 469
Query: 791 GAENHQAGSCKMGPASDPSAVVSPELKVHGVDRLRVVDCSIMPAVTSGNTNAPAIMIAEK 850
H + SCKMG D AVV E +VHG++ LRVVD SIMP +T+GN NAP IM+AEK
Sbjct: 470 ETAFHPSCSCKMG--YDDMAVVDNEGRVHGMEALRVVDASIMPRITTGNLNAPTIMLAEK 527
Query: 851 ASDLI 855
+D I
Sbjct: 528 IADRI 532
Score = 53.9 bits (128), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 33/86 (38%), Positives = 52/86 (60%), Gaps = 8/86 (9%)
Query: 139 DYDFIVIGGGSSGAVVANRLSEVPNWRVLLIEAGGDE---PTGTQIP-SMFLNFLGSSID 194
+YD+I++G GS+G V+A+RL+E + VLL+EAGG + TQ+P ++ G +
Sbjct: 5 EYDYIIVGAGSAGNVLASRLTEDADVTVLLLEAGGPDYRFDFRTQMPAALAFPLQGRRYN 64
Query: 195 YGYKTEPEDMACLNNEERRCNWPRGK 220
+ Y+T+PE +NN C RGK
Sbjct: 65 WAYETDPE--PHMNNRRMECG--RGK 86
Score = 48.1 bits (113), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/45 (55%), Positives = 32/45 (71%), Gaps = 2/45 (4%)
Query: 292 HQAGSCKMGPASDPSAVVSPELKVHGVDRLRVVDCSIMPAVTSGS 336
H + SCKMG D AVV E +VHG++ LRVVD SIMP +T+G+
Sbjct: 474 HPSCSCKMG--YDDMAVVDNEGRVHGMEALRVVDASIMPRITTGN 516
Score = 33.5 bits (75), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 12/22 (54%), Positives = 20/22 (90%)
Query: 61 DYDFIVIGGGSSGAVVANRLSE 82
+YD+I++G GS+G V+A+RL+E
Sbjct: 5 EYDYIIVGAGSAGNVLASRLTE 26
>sp|Q4ZM63|BETA_PSEU2 Choline dehydrogenase OS=Pseudomonas syringae pv. syringae (strain
B728a) GN=betA PE=3 SV=1
Length = 568
Score = 242 bits (617), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 165/486 (33%), Positives = 248/486 (51%), Gaps = 42/486 (8%)
Query: 383 VSCLLSPVLGGTSVLNGMMYIRGSRADYDNWAKA-GNPGWSYQDVLPYFLKSEDNQQATM 441
+ C LGG+S++NGM YIRG+ DYD WAK G WSY D LPYF K+E +
Sbjct: 81 MECGRGKGLGGSSLINGMCYIRGNAMDYDGWAKEPGLEDWSYLDCLPYFRKAETRD---I 137
Query: 442 MDQGFHGVGGYLTVTQFPY-HPPLSHSILQGAMELGMP-VRDLNGVSHTGFM-IAQTTTR 498
+HG G ++VT + PL H++++ ++ G P DLNG GF + +T T
Sbjct: 138 GPNDYHGGEGPVSVTTPKAGNNPLFHAMVEAGVQAGFPRTDDLNGYQQEGFGPMDRTVTP 197
Query: 499 NGSRLSTSKAFLRPIISRNNLHILLNTTVTRVIVDPLTKAAIGVEFLTNGRLERLQAK-- 556
NG R ST++ +L R+ L I+ + R++ + K A+GV +L R+QA+
Sbjct: 198 NGRRASTARGYLDEAKKRSTLTIVTHALTDRILFE--GKRAVGVAYLVGDSDTRIQARAR 255
Query: 557 NEVIVCAGAVDSPRILLLSGIGPREELRRLNIAPIHDLPGVGKNLHNHVAHFLNFFINDT 616
EV++C GA+ SP+IL SG+GP E L +L+I +HDLPGVG+NL +H+ +L +
Sbjct: 256 KEVLLCGGAIASPQILQRSGVGPAEVLNKLDIPVVHDLPGVGQNLQDHLEMYLQYACTQP 315
Query: 617 DTT--ALNW----ATAMEYLLFRDGLMSGTGLSEVTGFVHSRLSNPAEDNPDLQIFFSGY 670
+ +L W A E++ G+ + E GF+ S+ A + P++Q F
Sbjct: 316 VSLYPSLKWWNQPAIGAEWMFLGTGIGASNQF-EAGGFIR---SSEAFEWPNIQYHFLPV 371
Query: 671 LANCARTGQVGERSDGMNNSTPVPQRTISIFPTVLHPKSRGYLTLKDNNPQTPPLIFARY 730
N N + V + + SRG + +K +P+ P I Y
Sbjct: 372 AIN-------------YNGTKGVQEHGFQAHVGSMRSPSRGRVQVKSKDPREYPSILFNY 418
Query: 731 LTHPDDVKTLVDGIKIAIRLTQTAALQKYGFRIDTTPVKGCENLPFGCDAYWECAIRRNT 790
+ D + DGI++ + Q AL Y R + +P + D + +R +
Sbjct: 419 MASEQDWQEFRDGIRLTREIMQQPALDPYRGR-EISP-----GIDVQSDEALDQFVREHA 472
Query: 791 GAENHQAGSCKMGPASDPSAVVSPELKVHGVDRLRVVDCSIMPAVTSGNTNAPAIMIAEK 850
H + SCKMG +D AVV + +VHG+ LRVVD SIMP +T+GN NAP IMIAEK
Sbjct: 473 ETAYHPSCSCKMG--TDEMAVVDGQGRVHGLQSLRVVDASIMPIITTGNLNAPTIMIAEK 530
Query: 851 ASDLIK 856
+D I+
Sbjct: 531 IADKIR 536
Score = 52.8 bits (125), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 34/86 (39%), Positives = 49/86 (56%), Gaps = 8/86 (9%)
Query: 139 DYDFIVIGGGSSGAVVANRLSEVPNWRVLLIEAGGDE---PTGTQIP-SMFLNFLGSSID 194
+YD+I+IG GS+G +A RL+E VLL+EAGG + TQ+P ++ G +
Sbjct: 6 EYDYIIIGAGSAGNTLAARLTEDAGVTVLLLEAGGPDYRLDFRTQMPAALAFPLQGRRYN 65
Query: 195 YGYKTEPEDMACLNNEERRCNWPRGK 220
+ Y+TEPE +NN C RGK
Sbjct: 66 WAYETEPE--PHMNNRRMECG--RGK 87
Score = 48.9 bits (115), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/54 (46%), Positives = 35/54 (64%), Gaps = 2/54 (3%)
Query: 283 IRRNTGAENHQAGSCKMGPASDPSAVVSPELKVHGVDRLRVVDCSIMPAVTSGS 336
+R + H + SCKMG +D AVV + +VHG+ LRVVD SIMP +T+G+
Sbjct: 468 VREHAETAYHPSCSCKMG--TDEMAVVDGQGRVHGLQSLRVVDASIMPIITTGN 519
>sp|Q48CM7|BETA_PSE14 Choline dehydrogenase OS=Pseudomonas syringae pv. phaseolicola
(strain 1448A / Race 6) GN=betA PE=3 SV=1
Length = 568
Score = 241 bits (616), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 164/486 (33%), Positives = 250/486 (51%), Gaps = 42/486 (8%)
Query: 383 VSCLLSPVLGGTSVLNGMMYIRGSRADYDNWAKA-GNPGWSYQDVLPYFLKSEDNQQATM 441
+ C LGG+S++NGM YIRG+ DYD WAK G WSY D LPYF K+E +
Sbjct: 81 MECGRGKGLGGSSLINGMCYIRGNAMDYDGWAKEPGLEDWSYLDCLPYFRKAETRD---I 137
Query: 442 MDQGFHGVGGYLTVTQFPY-HPPLSHSILQGAMELGMP-VRDLNGVSHTGFM-IAQTTTR 498
+HG G ++VT+ + PL H++++ ++ G P DLNG GF + +T T
Sbjct: 138 GPNDYHGGEGPVSVTKPKAGNNPLFHAMVEAGVQAGFPRTDDLNGYQQEGFGPMDRTVTP 197
Query: 499 NGSRLSTSKAFLRPIISRNNLHILLNTTVTRVIVDPLTKAAIGVEFLTNGRLERLQAK-- 556
NG R ST++ +L R+ L I+ + R++ + K A+GV +L R+QA+
Sbjct: 198 NGRRASTARGYLDEAKKRSTLTIVTHALTDRILFE--GKRAVGVAYLVGDSDTRIQARAR 255
Query: 557 NEVIVCAGAVDSPRILLLSGIGPREELRRLNIAPIHDLPGVGKNLHNHVAHFLNFFINDT 616
EV++C GA+ SP+IL SG+GP E L +L+I +HDLPGVG+NL +H+ +L +
Sbjct: 256 KEVLLCGGAIASPQILQRSGVGPAEVLNKLDIPVVHDLPGVGQNLQDHLEMYLQYACTQP 315
Query: 617 DTT--ALNW----ATAMEYLLFRDGLMSGTGLSEVTGFVHSRLSNPAEDNPDLQIFFSGY 670
+ +L W A +++ G+ + E GF+ S+ A + P++Q F
Sbjct: 316 VSLYPSLKWWNQPAIGAKWMFLGTGIGASNQF-EAGGFIR---SSEAFEWPNIQYHFLPV 371
Query: 671 LANCARTGQVGERSDGMNNSTPVPQRTISIFPTVLHPKSRGYLTLKDNNPQTPPLIFARY 730
N N + V + + SRG + +K +P+ P I Y
Sbjct: 372 AIN-------------YNGTKGVQEHGFQAHVGSMRSPSRGRVQVKSKDPREYPSILFNY 418
Query: 731 LTHPDDVKTLVDGIKIAIRLTQTAALQKYGFRIDTTPVKGCENLPFGCDAYWECAIRRNT 790
++ D + DGI++ + Q AL Y R + +P + D + +R +
Sbjct: 419 MSSEQDWQEFRDGIRLTREIMQQPALDPYRGR-EISP-----GIDVQSDEALDQFVREHA 472
Query: 791 GAENHQAGSCKMGPASDPSAVVSPELKVHGVDRLRVVDCSIMPAVTSGNTNAPAIMIAEK 850
H + SCKMG +D AVV + +VHG+ LRVVD SIMP +T+GN NAP IMIAEK
Sbjct: 473 ETAYHPSCSCKMG--TDEMAVVDGQGRVHGLQSLRVVDASIMPIITTGNLNAPTIMIAEK 530
Query: 851 ASDLIK 856
+D I+
Sbjct: 531 IADKIR 536
Score = 52.8 bits (125), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 34/86 (39%), Positives = 49/86 (56%), Gaps = 8/86 (9%)
Query: 139 DYDFIVIGGGSSGAVVANRLSEVPNWRVLLIEAGGDE---PTGTQIP-SMFLNFLGSSID 194
+YD+I+IG GS+G +A RL+E VLL+EAGG + TQ+P ++ G +
Sbjct: 6 EYDYIIIGAGSAGNTLAARLTEDAGVTVLLLEAGGPDYRLDFRTQMPAALAFPLQGRRYN 65
Query: 195 YGYKTEPEDMACLNNEERRCNWPRGK 220
+ Y+TEPE +NN C RGK
Sbjct: 66 WAYETEPE--PHMNNRRMECG--RGK 87
Score = 48.9 bits (115), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/54 (46%), Positives = 35/54 (64%), Gaps = 2/54 (3%)
Query: 283 IRRNTGAENHQAGSCKMGPASDPSAVVSPELKVHGVDRLRVVDCSIMPAVTSGS 336
+R + H + SCKMG +D AVV + +VHG+ LRVVD SIMP +T+G+
Sbjct: 468 VREHAETAYHPSCSCKMG--TDEMAVVDGQGRVHGLQSLRVVDASIMPIITTGN 519
>sp|Q1MJU4|BETA_RHIL3 Choline dehydrogenase OS=Rhizobium leguminosarum bv. viciae (strain
3841) GN=betA PE=3 SV=1
Length = 549
Score = 241 bits (615), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 157/496 (31%), Positives = 243/496 (48%), Gaps = 54/496 (10%)
Query: 390 VLGGTSVLNGMMYIRGSRADYDNWAKAGNPGWSYQDVLPYFLKSEDNQQATMMDQGFHGV 449
V+GG+S +NGM+Y+RG D++ W + G GW+Y DVLPYF + E + ++G+ G
Sbjct: 82 VIGGSSSINGMVYVRGHAEDFNRWEELGASGWAYADVLPYFKRMEHSHGG---EEGWRGT 138
Query: 450 GGYLTVTQFPYHPPLSHSILQGAMELGMPV-RDLNGVSHTGFMIAQTTTRNGSRLSTSKA 508
G L V + + PL + ++ + G D NG GF + + T G R S + A
Sbjct: 139 DGPLHVQRGGFTNPLFQAFVEAGKQAGFETTEDYNGSKQEGFGLMEQTIFGGRRWSAANA 198
Query: 509 FLRPIISRNNLHILLNTTVTRVIVDPLTKAAIGVEFLTNGRLERLQAKNEVIVCAGAVDS 568
+L+P + R+N+ I+ VI D A GVE NGR+E ++A EVIV A + +S
Sbjct: 199 YLKPALKRDNVKIVYGLAQRIVIED---GRATGVEIERNGRIEVVKANREVIVSASSFNS 255
Query: 569 PRILLLSGIGPREELRRLNIAPIHDLPGVGKNLHNHVAHFLNFFINDTDT------TALN 622
P++L+LSGIGP + L+ + IA D PGVG NL +H + F+ T + L
Sbjct: 256 PKLLMLSGIGPGQHLQDMGIAVKADRPGVGANLQDH----MEFYFQQVSTKPVSLYSWLP 311
Query: 623 W----ATAMEYLLFRDGLMSGTGLSEVTGFVHSRLSNPAEDNPDLQIFFSGYLANCARTG 678
W ++LL R GL + E F+ S P PD+Q F + G
Sbjct: 312 WFWQGVAGAQWLLSRGGLGASNQF-EACAFLRS---APGLKQPDIQYHF--LPVAISYDG 365
Query: 679 QVGERSDGMNNSTPVPQRTISIFPTVLHPKSRGYLTLKDNNPQTPPLIFARYLTHPDDVK 738
+ +S G + KSRG ++L+ +P+ P++ Y++H +D +
Sbjct: 366 KAAAKSHGFQ-----------VHVGYNLSKSRGSVSLRSADPKADPVLRFNYMSHAEDWE 414
Query: 739 TLVDGIKIAIRLTQTAALQKYGFRIDTTPVKGCENLPFGCDAYWECAIRRNTGAENHQAG 798
+++ + +A Y + P +G ++ D + +R + + H G
Sbjct: 415 KFRHCVRLTREIFGQSAFHDY-RGPEIQPGEGVQS-----DEEIDAFLREHLESAYHPCG 468
Query: 799 SCKMGPASDPSAVVSPELKVHGVDRLRVVDCSIMPAVTSGNTNAPAIMIAEKASDLI--- 855
+C+MG DP AVV P+ +V G+D LRV D SI P VT GN N P+IM EKA+D I
Sbjct: 469 TCRMGAKDDPMAVVDPQTRVIGIDGLRVADSSIFPHVTYGNLNGPSIMTGEKAADHILGK 528
Query: 856 -------KQQWIGKRA 864
++ WI RA
Sbjct: 529 QPLARSNQEPWINPRA 544
Score = 54.3 bits (129), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 25/54 (46%), Positives = 34/54 (62%)
Query: 283 IRRNTGAENHQAGSCKMGPASDPSAVVSPELKVHGVDRLRVVDCSIMPAVTSGS 336
+R + + H G+C+MG DP AVV P+ +V G+D LRV D SI P VT G+
Sbjct: 456 LREHLESAYHPCGTCRMGAKDDPMAVVDPQTRVIGIDGLRVADSSIFPHVTYGN 509
Score = 52.4 bits (124), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 37/83 (44%), Positives = 50/83 (60%), Gaps = 6/83 (7%)
Query: 141 DFIVIGGGSSGAVVANRLSEVPNWRVLLIEAGG-DEPTGTQIPSMFLNFLG-SSIDYGYK 198
DF++IG GS+G+ +A RLSE V++IEAGG D Q+P+ + ++GY
Sbjct: 4 DFVIIGSGSAGSALAYRLSEGGKNSVIVIEAGGSDFGPFIQMPAALAWPMSMKRYNWGYL 63
Query: 199 TEPEDMACLNNEERRCNWPRGKV 221
+EPE A LNN RR PRGKV
Sbjct: 64 SEPE--ANLNN--RRITAPRGKV 82
>sp|Q8D3K2|BETA_VIBVU Choline dehydrogenase OS=Vibrio vulnificus (strain CMCP6) GN=betA
PE=3 SV=1
Length = 560
Score = 241 bits (615), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 168/515 (32%), Positives = 243/515 (47%), Gaps = 55/515 (10%)
Query: 362 ALSCHRNSKSMVWTGSVLWTA------VSCLLSPVLGGTSVLNGMMYIRGSRADYDNWAK 415
ALS NS+ W A + C VLGG+S +NGM+Y+RG D+D W +
Sbjct: 50 ALSYPMNSEKYAWQFETDAEADLDGRRLHCPRGKVLGGSSSINGMVYVRGHACDFDEWEE 109
Query: 416 AGNPGWSYQDVLPYFLKSEDNQQATMMDQGFHG-----VGGYLTVTQFPYHPPLSHSILQ 470
G GW+YQ LPYF ++E+ +G G G +T+ PL + +
Sbjct: 110 QGAKGWNYQACLPYFRRAENWIDGEDEYRGGDGPLSTCAGNKMTLN------PLYRAFID 163
Query: 471 GAMELGMP-VRDLNGVSHTGFMIAQTTTRNGSRLSTSKAFLRPIISRNNLHILLNTTVTR 529
E G P D NG GF T +NG R STS A+L R+N ++ V R
Sbjct: 164 AGKEAGYPETSDYNGYQQEGFGPMHMTVKNGVRASTSNAYLSRAKKRSNFKLIKGVVVQR 223
Query: 530 VIVDPLTKAAIGVEFLTNGRLERLQAKNEVIVCAGAVDSPRILLLSGIGPREELRRLNIA 589
++++ K A+GVEF G L AKNEVI AG++ S ++L LSGIGP+ L + +
Sbjct: 224 ILLE--EKRAVGVEFELAGELRTCFAKNEVISSAGSIGSVQLLQLSGIGPKTVLEKAGVT 281
Query: 590 PIHDLPGVGKNLHNHVAHFLNFFIND--TDTTALNWAT----AMEYLLFRDGLMSGTGLS 643
P+H LPGVG+NL +H+ + + T L+W + E++L R GL T
Sbjct: 282 PVHHLPGVGQNLQDHLEVYFQYHCQKPITLNGKLDWFSKGLIGAEWILTRKGL-GATNHF 340
Query: 644 EVTGFVHSRLSNPAEDNPDLQIFFSGYLANCARTGQVGERSDGMNNSTPVPQRTISIFPT 703
E F+ SR P++Q F A GQ G + + P
Sbjct: 341 ESCAFIRSRAGLKW---PNIQYHF--LPAAMRYDGQAAFDGHGFQ---------VHVGPN 386
Query: 704 VLHPKSRGYLTLKDNNPQTPPLIFARYLTHPDDVKTLVDGIKIAIRLTQTAALQKYGFRI 763
P+SRG + + NP P I YL+ D + D I++ + A+ ++
Sbjct: 387 --KPESRGRVEIVSANPSDKPKIQFNYLSTERDRQDWRDCIRLTREILAQPAMDEF---- 440
Query: 764 DTTPVKGCENLP---FGCDAYWECAIRRNTGAENHQAGSCKMGPASDPSAVVSPELKVHG 820
+G E P DA + ++ N + H + SCKMG DP AV+ E +V G
Sbjct: 441 -----RGEEIQPGINVATDAEIDQWVKENVESAYHPSCSCKMGADDDPMAVLDEECRVRG 495
Query: 821 VDRLRVVDCSIMPAVTSGNTNAPAIMIAEKASDLI 855
+ LRVVD S+ P + +GN NAP IM+AE+A+DLI
Sbjct: 496 ITNLRVVDSSVFPTIPNGNLNAPTIMVAERAADLI 530
Score = 59.3 bits (142), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 36/85 (42%), Positives = 56/85 (65%), Gaps = 4/85 (4%)
Query: 138 RDYDFIVIGGGSSGAVVANRLSEVPNWRVLLIEAGG-DEPTGTQIPSMFLNFLGSSIDYG 196
+ YD+I++G GS+G V+A+RLSE + VLL+EAGG D+ Q+P+ L++ +S Y
Sbjct: 3 QHYDYIIVGAGSAGCVLADRLSESGDHSVLLLEAGGSDKSIFIQMPTA-LSYPMNSEKYA 61
Query: 197 YKTEPEDMACLNNEERRCNWPRGKV 221
++ E + A L+ RR + PRGKV
Sbjct: 62 WQFETDAEADLDG--RRLHCPRGKV 84
Score = 50.1 bits (118), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 33/54 (61%)
Query: 283 IRRNTGAENHQAGSCKMGPASDPSAVVSPELKVHGVDRLRVVDCSIMPAVTSGS 336
++ N + H + SCKMG DP AV+ E +V G+ LRVVD S+ P + +G+
Sbjct: 461 VKENVESAYHPSCSCKMGADDDPMAVLDEECRVRGITNLRVVDSSVFPTIPNGN 514
Score = 34.7 bits (78), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 13/23 (56%), Positives = 20/23 (86%)
Query: 60 RDYDFIVIGGGSSGAVVANRLSE 82
+ YD+I++G GS+G V+A+RLSE
Sbjct: 3 QHYDYIIVGAGSAGCVLADRLSE 25
>sp|Q3K5H3|BETA_PSEPF Choline dehydrogenase OS=Pseudomonas fluorescens (strain Pf0-1)
GN=betA PE=3 SV=1
Length = 567
Score = 241 bits (614), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 165/485 (34%), Positives = 249/485 (51%), Gaps = 40/485 (8%)
Query: 383 VSCLLSPVLGGTSVLNGMMYIRGSRADYDNWAK-AGNPGWSYQDVLPYFLKSEDNQQATM 441
+ C LGG+S++NGM YIRG+ DYD WAK G WSY D LPYF K+E +
Sbjct: 79 MECGRGKGLGGSSLINGMCYIRGNAMDYDGWAKLPGLEDWSYLDCLPYFRKAETRD---I 135
Query: 442 MDQGFHGVGGYLTVTQFPY-HPPLSHSILQGAMELGMP-VRDLNGVSHTGFM-IAQTTTR 498
+HG G ++VT + PL H++++ ++ G P DLNG GF + +T T
Sbjct: 136 GPNDYHGGDGPVSVTTPKAGNNPLFHAMVEAGVQAGYPRTEDLNGYQQEGFGPMDRTVTP 195
Query: 499 NGSRLSTSKAFLRPIISRNNLHILLNTTVTRVIVDPLTKAAIGVEFLTNGRLERLQAK-- 556
NG R ST++ +L R+ L I+ + +V+ + K A+GV +L ER++A+
Sbjct: 196 NGRRASTARGYLDVAKKRSTLTIVTHALTDKVLFE--GKRAVGVRYLVGAAEERVEARAR 253
Query: 557 NEVIVCAGAVDSPRILLLSGIGPREELRRLNIAPIHDLPGVGKNLHNHVAHFLNFFINDT 616
EVIVC+GA+ SP++L SG+GP + L L+I +HDLPGVG+NL +H+ +L +
Sbjct: 254 KEVIVCSGAIASPQLLQRSGVGPAKLLESLDIPVVHDLPGVGENLQDHLELYLQYACTQP 313
Query: 617 DTTALNWATAMEYLLFRDGLMSGTGLS-----EVTGFVHSRLSNPAEDNPDLQIFFSGYL 671
+ + + + + L +GTG+ E GF+ +R P + P++Q F
Sbjct: 314 VSLYPSLLWYNQPAIGAEWLFNGTGIGASNQFEAGGFIRTR---PEFEWPNIQYHFLPVA 370
Query: 672 ANCARTGQVGERSDGMNNSTPVPQRTISIFPTVLHPKSRGYLTLKDNNPQTPPLIFARYL 731
N N S V + + SRG + +K +P+ P I Y+
Sbjct: 371 IN-------------YNGSNGVKEHGFQAHMGSMRSPSRGRVQVKSKDPRQHPSILFNYM 417
Query: 732 THPDDVKTLVDGIKIAIRLTQTAALQKYGFRIDTTPVKGCENLPFGCDAYWECAIRRNTG 791
D + DGI++ + Q AL + R + +P + D + IR +
Sbjct: 418 ATEQDWQEFRDGIRLTREIMQQPALDAFRGR-EISP-----GIEVQTDEQLDKFIREHAE 471
Query: 792 AENHQAGSCKMGPASDPSAVVSPELKVHGVDRLRVVDCSIMPAVTSGNTNAPAIMIAEKA 851
H + SCKMG +D AVV E +VHG+ LRVVD SIMP +T+GN NAP IM+AEK
Sbjct: 472 TAFHPSCSCKMG--TDDMAVVDGEGRVHGMQGLRVVDASIMPIITTGNLNAPTIMMAEKI 529
Query: 852 SDLIK 856
+D I+
Sbjct: 530 ADKIR 534
Score = 49.7 bits (117), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/54 (50%), Positives = 35/54 (64%), Gaps = 2/54 (3%)
Query: 283 IRRNTGAENHQAGSCKMGPASDPSAVVSPELKVHGVDRLRVVDCSIMPAVTSGS 336
IR + H + SCKMG +D AVV E +VHG+ LRVVD SIMP +T+G+
Sbjct: 466 IREHAETAFHPSCSCKMG--TDDMAVVDGEGRVHGMQGLRVVDASIMPIITTGN 517
Score = 47.8 bits (112), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 50/87 (57%), Gaps = 8/87 (9%)
Query: 138 RDYDFIVIGGGSSGAVVANRLSEVPNWRVLLIEAGGDE---PTGTQIP-SMFLNFLGSSI 193
+++D+I++G GS+G +A RL+E VLL+EAGG + TQ+P ++ G
Sbjct: 3 QEFDYIIVGAGSAGNTLATRLTEDEGVTVLLLEAGGPDYRFDFRTQMPAALAFPLQGRRY 62
Query: 194 DYGYKTEPEDMACLNNEERRCNWPRGK 220
++ Y+T+PE + + RR RGK
Sbjct: 63 NWAYETDPEP----HMDGRRMECGRGK 85
>sp|B5ZUG2|BETA_RHILW Choline dehydrogenase OS=Rhizobium leguminosarum bv. trifolii
(strain WSM2304) GN=betA PE=3 SV=1
Length = 549
Score = 239 bits (611), Expect = 6e-62, Method: Compositional matrix adjust.
Identities = 158/499 (31%), Positives = 239/499 (47%), Gaps = 60/499 (12%)
Query: 390 VLGGTSVLNGMMYIRGSRADYDNWAKAGNPGWSYQDVLPYFLKSEDNQQATMMDQGFHGV 449
V+GG+S +NGM+Y+RG D++ W + G GW+Y DVLPYF + E + ++G+ G
Sbjct: 82 VIGGSSSINGMVYVRGHAEDFNRWEELGAGGWAYADVLPYFKRMEHSHGG---EEGWRGT 138
Query: 450 GGYLTVTQFPYHPPLSHSILQGAMELGMPV-RDLNGVSHTGFMIAQTTTRNGSRLSTSKA 508
G L V + + PL + ++ + G D NG GF + + T +G R S + A
Sbjct: 139 DGPLHVQRGGFTNPLFRAFVEAGKQAGFETTEDYNGSKQEGFGLMEQTIFSGRRWSAANA 198
Query: 509 FLRPIISRNNLHILLNTTVTRVIVDPLTKAAIGVEFLTNGRLERLQAKNEVIVCAGAVDS 568
+L+P + R N+ I+ VI D A GVE G++E ++A EVIV A + +S
Sbjct: 199 YLKPALKRKNVEIIYGFAQRIVIED---GRATGVEIERGGKIEVVKANREVIVSASSFNS 255
Query: 569 PRILLLSGIGPREELRRLNIAPIHDLPGVGKNLHNHVAHFLNFFINDTDT------TALN 622
P++L+LSGIGP E L+ + I D PGVG NL +H + F+ T + L
Sbjct: 256 PKLLMLSGIGPGEHLKEMGIEVKADRPGVGANLQDH----MEFYFQQVSTKPVSLYSWLP 311
Query: 623 W----ATAMEYLLFRDGLMSGTGLSEVTGFVHSRLSNPAEDNPDLQIFFSGYLANCARTG 678
W ++LL + GL + E F+ S P PD+Q F + G
Sbjct: 312 WFWQGVAGAQWLLSKGGLGASNQF-EACAFLRS---APGLKQPDIQYHF--LPVAISYDG 365
Query: 679 QVGERSDGMNNSTPVPQRTISIFPTVLHPKSRGYLTLKDNNPQTPPLIFARYLTHPDDVK 738
+ +S G + KSRG +TL+ +P+ P++ Y++H +D +
Sbjct: 366 KAAAKSHGFQ-----------VHVGYNLSKSRGSVTLRSPDPKADPVLRFNYMSHAEDWE 414
Query: 739 TLVDGIKIAIRLTQTAALQKYGFRIDTTPVKGCENLP---FGCDAYWECAIRRNTGAENH 795
+++ L AA Y +G E P D + +R + + H
Sbjct: 415 KFRHCVRLTRELFGQAAFDDY---------RGAEIQPGESVQSDEEIDAFLREHLESAYH 465
Query: 796 QAGSCKMGPASDPSAVVSPELKVHGVDRLRVVDCSIMPAVTSGNTNAPAIMIAEKASDLI 855
G+CKMG DP AVV P+ +V GV+ LRV D SI P VT GN N P+IM EKA+D I
Sbjct: 466 PCGTCKMGAKDDPMAVVDPQTRVIGVEALRVADSSIFPHVTYGNLNGPSIMTGEKAADHI 525
Query: 856 ----------KQQWIGKRA 864
++ W+ RA
Sbjct: 526 LGKQPLARSNQEPWVNPRA 544
Score = 54.7 bits (130), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 26/54 (48%), Positives = 34/54 (62%)
Query: 283 IRRNTGAENHQAGSCKMGPASDPSAVVSPELKVHGVDRLRVVDCSIMPAVTSGS 336
+R + + H G+CKMG DP AVV P+ +V GV+ LRV D SI P VT G+
Sbjct: 456 LREHLESAYHPCGTCKMGAKDDPMAVVDPQTRVIGVEALRVADSSIFPHVTYGN 509
Score = 51.2 bits (121), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 37/83 (44%), Positives = 49/83 (59%), Gaps = 6/83 (7%)
Query: 141 DFIVIGGGSSGAVVANRLSEVPNWRVLLIEAGG-DEPTGTQIPSMFLNFLG-SSIDYGYK 198
DF++IG GS+G+ +A RLSE VL+IEAGG D Q+P+ + ++GY
Sbjct: 4 DFVIIGSGSAGSALAYRLSEDGKNSVLVIEAGGSDFGPFIQMPAALAWPMSMKRYNWGYL 63
Query: 199 TEPEDMACLNNEERRCNWPRGKV 221
+EPE LNN RR PRGKV
Sbjct: 64 SEPE--PNLNN--RRITAPRGKV 82
>sp|Q88AE7|BETA_PSESM Choline dehydrogenase OS=Pseudomonas syringae pv. tomato (strain
DC3000) GN=betA PE=3 SV=1
Length = 568
Score = 239 bits (609), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 164/487 (33%), Positives = 251/487 (51%), Gaps = 44/487 (9%)
Query: 383 VSCLLSPVLGGTSVLNGMMYIRGSRADYDNWAKA-GNPGWSYQDVLPYFLKSEDNQQATM 441
+ C LGG+S++NGM YIRG+ DYD WAK G WSY D LPYF K+E +
Sbjct: 81 MECGRGKGLGGSSLINGMCYIRGNAMDYDGWAKEPGLEDWSYLDCLPYFRKAETRD---I 137
Query: 442 MDQGFHGVGGYLTVTQFPY-HPPLSHSILQGAMELGMP-VRDLNGVSHTGFM-IAQTTTR 498
+HG G ++VT + PL H++++ ++ G P DLNG GF + +T T
Sbjct: 138 GPNDYHGGEGPVSVTTPKAGNNPLFHAMVEAGVQAGFPRTDDLNGYQQEGFGPMDRTVTP 197
Query: 499 NGSRLSTSKAFLRPIISRNNLHILLNTTVTRVIVDPLTKAAIGVEFL---TNGRLERLQA 555
G R ST++ +L R+ L I+ + R++ + K A+GV +L ++ R+E ++A
Sbjct: 198 KGRRASTARGYLDEAKKRDTLSIVTHALTDRILFE--GKRAVGVAYLVGDSDTRIE-VRA 254
Query: 556 KNEVIVCAGAVDSPRILLLSGIGPREELRRLNIAPIHDLPGVGKNLHNHVAHFLNFFIND 615
+ EV++C GA+ SP+IL SG+GP E L +L+I +HDLPGVG+NL +H+ +L +
Sbjct: 255 RKEVLLCGGAIASPQILQRSGVGPAEVLNKLDIPVVHDLPGVGQNLQDHLEMYLQYACTQ 314
Query: 616 TDTT--ALNW----ATAMEYLLFRDGLMSGTGLSEVTGFVHSRLSNPAEDNPDLQIFFSG 669
+ +L W A E++ G+ + E GF+ S+ A + P++Q F
Sbjct: 315 PVSLYPSLKWWNQPAIGAEWMFLGTGIGASNQF-EAGGFIR---SSEAFEWPNIQYHFLP 370
Query: 670 YLANCARTGQVGERSDGMNNSTPVPQRTISIFPTVLHPKSRGYLTLKDNNPQTPPLIFAR 729
N N + V + + SRG + +K +P+ P I
Sbjct: 371 VAIN-------------YNGTKGVQEHGFQAHVGSMRSPSRGRVHVKSKDPREYPSILFN 417
Query: 730 YLTHPDDVKTLVDGIKIAIRLTQTAALQKYGFRIDTTPVKGCENLPFGCDAYWECAIRRN 789
Y+ D + DGI++ + Q AL Y R + +P + D + +R +
Sbjct: 418 YMASDQDWQEFRDGIRLTREIMQQPALDPYRGR-EISP-----GIDVQSDEALDQFVREH 471
Query: 790 TGAENHQAGSCKMGPASDPSAVVSPELKVHGVDRLRVVDCSIMPAVTSGNTNAPAIMIAE 849
H + SCKMG +D AVV + +VHG+ LRVVD SIMP +T+GN NAP IMIAE
Sbjct: 472 AETAYHPSCSCKMG--TDEMAVVDGQGRVHGMQNLRVVDASIMPIITTGNLNAPTIMIAE 529
Query: 850 KASDLIK 856
K +D I+
Sbjct: 530 KIADKIR 536
Score = 51.2 bits (121), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 52/172 (30%), Positives = 81/172 (47%), Gaps = 34/172 (19%)
Query: 139 DYDFIVIGGGSSGAVVANRLSEVPNWRVLLIEAGGDE---PTGTQIP-SMFLNFLGSSID 194
+YD+I+IG GS+G +A RL+E VLL+EAGG + TQ+P ++ G +
Sbjct: 6 EYDYIIIGAGSAGNTLAARLTEDAGVTVLLLEAGGPDYRLDFRTQMPAALAFPLQGRRYN 65
Query: 195 YGYKTEPEDMACLNNEERRCNWPRGKVPNWRVLLIEAGGDEPTGTQIPSMFLNFLGSSID 254
+ Y+TEPE + + RR RGK G+ + + G+++D
Sbjct: 66 WAYETEPEP----HMDNRRMECGRGKGLG--------------GSSLINGMCYIRGNAMD 107
Query: 255 Y-GYKTEP--EDMACLNNEERRCNWPRGKCAIRRNTGAENHQAGSCKMGPAS 303
Y G+ EP ED + L+ C P + A R+ G ++ G GP S
Sbjct: 108 YDGWAKEPGLEDWSYLD-----C-LPYFRKAETRDIGPNDYHGGE---GPVS 150
Score = 48.9 bits (115), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/54 (46%), Positives = 35/54 (64%), Gaps = 2/54 (3%)
Query: 283 IRRNTGAENHQAGSCKMGPASDPSAVVSPELKVHGVDRLRVVDCSIMPAVTSGS 336
+R + H + SCKMG +D AVV + +VHG+ LRVVD SIMP +T+G+
Sbjct: 468 VREHAETAYHPSCSCKMG--TDEMAVVDGQGRVHGMQNLRVVDASIMPIITTGN 519
>sp|Q2KB43|BETA_RHIEC Choline dehydrogenase OS=Rhizobium etli (strain CFN 42 / ATCC
51251) GN=betA PE=3 SV=1
Length = 549
Score = 238 bits (607), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 156/496 (31%), Positives = 242/496 (48%), Gaps = 54/496 (10%)
Query: 390 VLGGTSVLNGMMYIRGSRADYDNWAKAGNPGWSYQDVLPYFLKSEDNQQATMMDQGFHGV 449
V+GG+S +NGM+Y+RG D++ W + G GW+Y DVLPYF + E + ++G+ G
Sbjct: 82 VIGGSSSINGMVYVRGHAEDFNRWEELGASGWAYADVLPYFKRMEHSHGG---EEGWRGT 138
Query: 450 GGYLTVTQFPYHPPLSHSILQGAMELGMPV-RDLNGVSHTGFMIAQTTTRNGSRLSTSKA 508
G L V + + PL + ++ + G D NG GF + + T G R S + A
Sbjct: 139 DGPLHVQRGGFTNPLFRAFIEAGKQAGFETTEDYNGSKQEGFGLMEQTIFAGRRWSAANA 198
Query: 509 FLRPIISRNNLHILLNTTVTRVIVDPLTKAAIGVEFLTNGRLERLQAKNEVIVCAGAVDS 568
+L+P + R+N+ I+ R++++ A GVE GR E ++A EVIV A + +S
Sbjct: 199 YLKPALKRDNVGIVYGLA-RRIVIE--NGRATGVEIERGGRTEVVKANREVIVSASSFNS 255
Query: 569 PRILLLSGIGPREELRRLNIAPIHDLPGVGKNLHNHVAHFLNFFINDTDT------TALN 622
P++L+LSGIGP + L+ + I D PGVG NL +H + F+ T + L
Sbjct: 256 PKLLMLSGIGPAKHLKEMGIEVKADRPGVGANLQDH----MEFYFQQVSTKPVSLYSWLP 311
Query: 623 W----ATAMEYLLFRDGLMSGTGLSEVTGFVHSRLSNPAEDNPDLQIFFSGYLANCARTG 678
W ++LL + GL + E F+ S P PD+Q F + G
Sbjct: 312 WFWQGVAGAQWLLSKGGLGASNQF-EACAFLRS---APGLKQPDIQYHF--LPVAISYDG 365
Query: 679 QVGERSDGMNNSTPVPQRTISIFPTVLHPKSRGYLTLKDNNPQTPPLIFARYLTHPDDVK 738
+ +S G + KSRG +TL+ +P+ P++ Y++HP+D +
Sbjct: 366 KAAAKSHGFQ-----------VHVGYNLSKSRGSVTLRSPDPKADPVLRFNYMSHPEDWE 414
Query: 739 TLVDGIKIAIRLTQTAALQKYGFRIDTTPVKGCENLPFGCDAYWECAIRRNTGAENHQAG 798
+++ + A Y + P +G ++ D + +R + + H G
Sbjct: 415 KFRHCVRLTREIFGQKAFDAY-RGPEIQPGEGVQS-----DEQIDSFLREHLESAYHPCG 468
Query: 799 SCKMGPASDPSAVVSPELKVHGVDRLRVVDCSIMPAVTSGNTNAPAIMIAEKASDLI--- 855
+CKMG DP AVV P+ +V GVD LRV D SI P VT GN N P+IM EKA+D I
Sbjct: 469 TCKMGAKDDPMAVVDPQTRVIGVDGLRVADSSIFPHVTYGNLNGPSIMTGEKAADHILGK 528
Query: 856 -------KQQWIGKRA 864
++ WI RA
Sbjct: 529 QPLARSNQEPWINPRA 544
Score = 55.8 bits (133), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/54 (50%), Positives = 34/54 (62%)
Query: 283 IRRNTGAENHQAGSCKMGPASDPSAVVSPELKVHGVDRLRVVDCSIMPAVTSGS 336
+R + + H G+CKMG DP AVV P+ +V GVD LRV D SI P VT G+
Sbjct: 456 LREHLESAYHPCGTCKMGAKDDPMAVVDPQTRVIGVDGLRVADSSIFPHVTYGN 509
Score = 51.2 bits (121), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 37/83 (44%), Positives = 49/83 (59%), Gaps = 6/83 (7%)
Query: 141 DFIVIGGGSSGAVVANRLSEVPNWRVLLIEAGG-DEPTGTQIPSMFLNFLG-SSIDYGYK 198
DF++IG GS+G+ +A RLSE VL+IEAGG D Q+P+ + ++GY
Sbjct: 4 DFVIIGSGSAGSALAYRLSEDGKNSVLVIEAGGSDFGPFIQMPAALAWPMSMKRYNWGYL 63
Query: 199 TEPEDMACLNNEERRCNWPRGKV 221
+EPE LNN RR PRGKV
Sbjct: 64 SEPE--PNLNN--RRITAPRGKV 82
>sp|B9JBA2|BETA_AGRRK Choline dehydrogenase OS=Agrobacterium radiobacter (strain K84 /
ATCC BAA-868) GN=betA PE=3 SV=1
Length = 549
Score = 238 bits (607), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 153/478 (32%), Positives = 241/478 (50%), Gaps = 46/478 (9%)
Query: 390 VLGGTSVLNGMMYIRGSRADYDNWAKAGNPGWSYQDVLPYFLKSEDNQQATMMDQGFHGV 449
V+GG+S +NGM+Y+RG D++ W + G GW+Y DVLPYF + E + ++G+ G
Sbjct: 82 VIGGSSSINGMVYVRGHAEDFNRWEELGAQGWAYADVLPYFKRMEHSHGG---EEGWRGT 138
Query: 450 GGYLTVTQFPYHPPLSHSILQGAMELGMPV-RDLNGVSHTGFMIAQTTTRNGSRLSTSKA 508
G L V + PL H+ ++ + G D NG GF + + TT G R S + A
Sbjct: 139 DGPLHVRRGDARNPLFHAFIEAGKQAGFEATEDYNGGKQEGFGLMEQTTWMGRRWSAATA 198
Query: 509 FLRPIISRNNLHILLNTTVTRVIVDPLTKAAIGVEFLTNGRLERLQAKNEVIVCAGAVDS 568
+L+P + R N+ L+ +V+++ A GVE G++E ++A +EVIV A + +S
Sbjct: 199 YLKPALKRPNVE-LIRCFARKVVIE--NGRATGVEIERGGKIEIVKANSEVIVSASSFNS 255
Query: 569 PRILLLSGIGPREELRRLNIAPIHDLPGVGKNLHNHVAHFLNFFINDTD---TTALNW-- 623
P++L+LSGIGP + L+ + I D PGVG NL +H + F+ T + +W
Sbjct: 256 PKLLMLSGIGPGQHLQEMGIEVKIDRPGVGANLQDH----MEFYFQQTSLKPVSLYSWLP 311
Query: 624 -----ATAMEYLLFRDGLMSGTGLSEVTGFVHSRLSNPAEDNPDLQIFFSGYLANCARTG 678
+++ F+ GL + E F+ S P PD+Q F + G
Sbjct: 312 WYMQGIVGAQWMFFKSGLGTSNQF-EACAFLRS---APGVKQPDIQYHF--LPVAISYDG 365
Query: 679 QVGERSDGMNNSTPVPQRTISIFPTVLHPKSRGYLTLKDNNPQTPPLIFARYLTHPDDVK 738
+ +S G +S KSRG +TL+ ++P+ P+I Y++HP+D +
Sbjct: 366 KAAAKSHGFQAHVGY---NLS--------KSRGAVTLRSSDPKADPVIRFNYMSHPEDWE 414
Query: 739 TLVDGIKIAIRLTQTAALQKY-GFRIDTTPVKGCENLPFGCDAYWECAIRRNTGAENHQA 797
+++ + A Y G I P ++ DA+ +R + + H
Sbjct: 415 KFRHCVRLTREIFGQKAFDDYRGPEIQPGPDVQTDDQ---IDAF----LREHLESAYHPC 467
Query: 798 GSCKMGPASDPSAVVSPELKVHGVDRLRVVDCSIMPAVTSGNTNAPAIMIAEKASDLI 855
G+CKMG DP AVV P+ +V GV+ LRV D SI P++T GN N P+IM EKA+D I
Sbjct: 468 GTCKMGSKDDPMAVVDPDTRVIGVEGLRVADSSIFPSLTYGNLNGPSIMTGEKAADHI 525
Score = 53.9 bits (128), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 25/54 (46%), Positives = 35/54 (64%)
Query: 283 IRRNTGAENHQAGSCKMGPASDPSAVVSPELKVHGVDRLRVVDCSIMPAVTSGS 336
+R + + H G+CKMG DP AVV P+ +V GV+ LRV D SI P++T G+
Sbjct: 456 LREHLESAYHPCGTCKMGSKDDPMAVVDPDTRVIGVEGLRVADSSIFPSLTYGN 509
Score = 48.9 bits (115), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 34/83 (40%), Positives = 49/83 (59%), Gaps = 6/83 (7%)
Query: 141 DFIVIGGGSSGAVVANRLSEVPNWRVLLIEAGG-DEPTGTQIPSMFLNFLG-SSIDYGYK 198
DF++IG GS+G+ +A+RLSE V+++E GG D Q+P+ + ++GY
Sbjct: 4 DFVIIGSGSAGSAMASRLSEDGKHTVIVLEFGGSDVGPFIQMPAALAWPMSMDRYNWGYL 63
Query: 199 TEPEDMACLNNEERRCNWPRGKV 221
+EPE LNN RR PRGKV
Sbjct: 64 SEPEPQ--LNN--RRITAPRGKV 82
>sp|Q7MF12|BETA_VIBVY Choline dehydrogenase OS=Vibrio vulnificus (strain YJ016) GN=betA
PE=3 SV=1
Length = 560
Score = 238 bits (606), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 167/515 (32%), Positives = 243/515 (47%), Gaps = 55/515 (10%)
Query: 362 ALSCHRNSKSMVWTGSVLWTA------VSCLLSPVLGGTSVLNGMMYIRGSRADYDNWAK 415
ALS NS+ W A + C VLGG+S +NGM+Y+RG D+D W +
Sbjct: 50 ALSYPMNSEKYAWQFETDAEADLDGRRLHCPRGKVLGGSSSINGMVYVRGHACDFDEWEE 109
Query: 416 AGNPGWSYQDVLPYFLKSEDNQQATMMDQGFHG-----VGGYLTVTQFPYHPPLSHSILQ 470
G GW+YQ LPYF ++E+ +G G G +T+ PL + +
Sbjct: 110 QGAKGWNYQACLPYFRRAENWIDGEDEYRGGDGPLSTCAGNKMTLN------PLYRAFID 163
Query: 471 GAMELGMP-VRDLNGVSHTGFMIAQTTTRNGSRLSTSKAFLRPIISRNNLHILLNTTVTR 529
E G P D NG GF T +NG R STS A+L R+N ++ V R
Sbjct: 164 AGKEAGYPETSDYNGYQQEGFGPMHMTVKNGVRASTSNAYLSRAKKRSNFKLIKGVVVQR 223
Query: 530 VIVDPLTKAAIGVEFLTNGRLERLQAKNEVIVCAGAVDSPRILLLSGIGPREELRRLNIA 589
++++ K A+GVEF G L AKNEVI AG++ S ++L LSGIGP+ L + +
Sbjct: 224 ILLE--EKRAVGVEFELAGELRTCFAKNEVISSAGSIGSVQLLQLSGIGPKTVLEKAGVT 281
Query: 590 PIHDLPGVGKNLHNHVAHFLNFFIND--TDTTALNWAT----AMEYLLFRDGLMSGTGLS 643
P++ LPGVG+NL +H+ + + T L+W + E++L R GL T
Sbjct: 282 PVYHLPGVGQNLQDHLEVYFQYHCQKPITLNGKLDWFSKGLIGTEWILTRKGL-GATNHF 340
Query: 644 EVTGFVHSRLSNPAEDNPDLQIFFSGYLANCARTGQVGERSDGMNNSTPVPQRTISIFPT 703
E F+ SR P++Q F A GQ G + + P
Sbjct: 341 ESCAFIRSRAGLKW---PNIQYHF--LPAAMRYDGQAAFDGHGFQ---------VHVGPN 386
Query: 704 VLHPKSRGYLTLKDNNPQTPPLIFARYLTHPDDVKTLVDGIKIAIRLTQTAALQKYGFRI 763
P+SRG + + NP P I YL+ D + D I++ + A+ ++
Sbjct: 387 --KPESRGRVEIVSANPLDKPKIQFNYLSTERDRQDWRDCIRLTREILAQPAMDEF---- 440
Query: 764 DTTPVKGCENLP---FGCDAYWECAIRRNTGAENHQAGSCKMGPASDPSAVVSPELKVHG 820
+G E P DA + ++ N + H + SCKMG DP AV+ E +V G
Sbjct: 441 -----RGEEIQPGINVATDAEIDQWVKENVESAYHPSCSCKMGADDDPMAVLDEECRVRG 495
Query: 821 VDRLRVVDCSIMPAVTSGNTNAPAIMIAEKASDLI 855
+ LRVVD S+ P + +GN NAP IM+AE+A+DLI
Sbjct: 496 ITNLRVVDSSVFPTIPNGNLNAPTIMVAERAADLI 530
Score = 58.9 bits (141), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 36/85 (42%), Positives = 56/85 (65%), Gaps = 4/85 (4%)
Query: 138 RDYDFIVIGGGSSGAVVANRLSEVPNWRVLLIEAGG-DEPTGTQIPSMFLNFLGSSIDYG 196
+ YD+I++G GS+G V+A+RLSE + VLL+EAGG D+ Q+P+ L++ +S Y
Sbjct: 3 QHYDYIIVGAGSAGCVLADRLSESGDHSVLLLEAGGSDKSIFIQMPTA-LSYPMNSEKYA 61
Query: 197 YKTEPEDMACLNNEERRCNWPRGKV 221
++ E + A L+ RR + PRGKV
Sbjct: 62 WQFETDAEADLDG--RRLHCPRGKV 84
Score = 50.1 bits (118), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 33/54 (61%)
Query: 283 IRRNTGAENHQAGSCKMGPASDPSAVVSPELKVHGVDRLRVVDCSIMPAVTSGS 336
++ N + H + SCKMG DP AV+ E +V G+ LRVVD S+ P + +G+
Sbjct: 461 VKENVESAYHPSCSCKMGADDDPMAVLDEECRVRGITNLRVVDSSVFPTIPNGN 514
Score = 34.7 bits (78), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 13/23 (56%), Positives = 20/23 (86%)
Query: 60 RDYDFIVIGGGSSGAVVANRLSE 82
+ YD+I++G GS+G V+A+RLSE
Sbjct: 3 QHYDYIIVGAGSAGCVLADRLSE 25
>sp|B4SHV9|BETA_STRM5 Choline dehydrogenase OS=Stenotrophomonas maltophilia (strain
R551-3) GN=betA PE=3 SV=1
Length = 560
Score = 238 bits (606), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 163/483 (33%), Positives = 244/483 (50%), Gaps = 36/483 (7%)
Query: 383 VSCLLSPVLGGTSVLNGMMYIRGSRADYDNWAKA-GNPGWSYQDVLPYFLKSEDNQQATM 441
+ C LGG+S++NGM YIRG+ DYDNWA G W+Y D LPYF K+E +
Sbjct: 81 MDCGRGKGLGGSSLINGMCYIRGNAMDYDNWASMPGLEDWTYLDCLPYFRKAETRD---I 137
Query: 442 MDQGFHGVGGYLTVTQFPY-HPPLSHSILQGAMELGMP-VRDLNGVSHTGFM-IAQTTTR 498
+HG G L VT + L ++++ ++ G P DLNG GF + +T T
Sbjct: 138 GPNDYHGGEGPLRVTTPKAGNNELFAAMVEAGVQAGYPRTDDLNGYQQEGFGPMDRTVTP 197
Query: 499 NGSRLSTSKAFLRPIISRNNLHILLNTTVTRVIVDPLTKAAIGVEFLTNGRLERLQAKNE 558
G R ST++ +L R NL I+ + R++ K A+GV++L N + +R A+ E
Sbjct: 198 KGRRSSTARGYLDLAKPRPNLTIVTHALTDRILFS--GKRAVGVQWLHNDQPQRATARRE 255
Query: 559 VIVCAGAVDSPRILLLSGIGPREELRRLNIAPIHDLPGVGKNLHNHVAHFLNFFINDTDT 618
V++C GA+ SP+IL SG+GP + LR L+I +H LPGVG NL +H+ +L + +
Sbjct: 256 VLLCGGAIASPQILQRSGVGPADLLRSLDIDLVHHLPGVGANLQDHLEMYLQYECKKPVS 315
Query: 619 TALNWATAMEYLLFRDGLMSGTGLS-----EVTGFVHSRLSNPAEDNPDLQIFFSGYLAN 673
A + + + L GTG+ E GF+ S + D P+LQ F N
Sbjct: 316 LAPALKLYNQPAIGAEWLFLGTGIGASNQFEAGGFIRS---DTEFDWPNLQYHFLPVAIN 372
Query: 674 CARTGQVGERSDGMNNSTPVPQRTISIFPTVLHPKSRGYLTLKDNNPQTPPLIFARYLTH 733
N S P+ + + + SRG + ++ +P+ P I Y++H
Sbjct: 373 -------------YNGSNPIKAHSFQMHVGSMRSPSRGRIHVRSKDPREHPSILFNYMSH 419
Query: 734 PDDVKTLVDGIKIAIRLTQTAALQKYGFRIDTTPVKGCENLPFGCDAYWECAIRRNTGAE 793
D + I+I + AL Y R + +P + DA + +R +
Sbjct: 420 DQDWREFRAAIRITREIFAQPALAPYSGR-EISPGSALQ-----TDAQIDAFVREHAETA 473
Query: 794 NHQAGSCKMGPASDPSAVVSPELKVHGVDRLRVVDCSIMPAVTSGNTNAPAIMIAEKASD 853
H + S KMG A DP AVV + +VHG++ LR+VD SIMP V +GN NAP IMIAEK +D
Sbjct: 474 YHPSCSNKMGHADDPMAVVDGQGRVHGLEGLRIVDASIMPQVVTGNLNAPTIMIAEKLAD 533
Query: 854 LIK 856
+I+
Sbjct: 534 VIR 536
Score = 56.6 bits (135), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 36/86 (41%), Positives = 53/86 (61%), Gaps = 8/86 (9%)
Query: 139 DYDFIVIGGGSSGAVVANRLSEVPNWRVLLIEAGGDE---PTGTQIP-SMFLNFLGSSID 194
+YD+I+IG GS+G V+A RL+E + VLL+EAGG + TQ+P ++ G +
Sbjct: 6 EYDYIIIGAGSAGNVLATRLTEDADVSVLLLEAGGPDYRLDFRTQMPAALAFPLQGKRYN 65
Query: 195 YGYKTEPEDMACLNNEERRCNWPRGK 220
+ YKT+PE +NN RR + RGK
Sbjct: 66 WAYKTDPEPF--MNN--RRMDCGRGK 87
Score = 51.6 bits (122), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 25/54 (46%), Positives = 35/54 (64%)
Query: 283 IRRNTGAENHQAGSCKMGPASDPSAVVSPELKVHGVDRLRVVDCSIMPAVTSGS 336
+R + H + S KMG A DP AVV + +VHG++ LR+VD SIMP V +G+
Sbjct: 466 VREHAETAYHPSCSNKMGHADDPMAVVDGQGRVHGLEGLRIVDASIMPQVVTGN 519
Score = 33.9 bits (76), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 13/22 (59%), Positives = 19/22 (86%)
Query: 61 DYDFIVIGGGSSGAVVANRLSE 82
+YD+I+IG GS+G V+A RL+E
Sbjct: 6 EYDYIIIGAGSAGNVLATRLTE 27
>sp|B2FQ89|BETA_STRMK Choline dehydrogenase OS=Stenotrophomonas maltophilia (strain
K279a) GN=betA PE=3 SV=1
Length = 560
Score = 238 bits (606), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 162/483 (33%), Positives = 244/483 (50%), Gaps = 36/483 (7%)
Query: 383 VSCLLSPVLGGTSVLNGMMYIRGSRADYDNWAKA-GNPGWSYQDVLPYFLKSEDNQQATM 441
+ C LGG+S++NGM YIRG+ DYDNWA G W+Y D LPYF K+E +
Sbjct: 81 MDCGRGKGLGGSSLINGMCYIRGNAMDYDNWASMPGLEDWTYLDCLPYFRKAETRD---I 137
Query: 442 MDQGFHGVGGYLTVTQFPY-HPPLSHSILQGAMELGMP-VRDLNGVSHTGFM-IAQTTTR 498
+HG G L VT + L ++++ ++ G P DLNG GF + +T T
Sbjct: 138 GPNDYHGGDGPLRVTTPKAGNNELFAAMVEAGVQAGYPRTDDLNGYQQEGFGPMDRTVTP 197
Query: 499 NGSRLSTSKAFLRPIISRNNLHILLNTTVTRVIVDPLTKAAIGVEFLTNGRLERLQAKNE 558
G R ST++ +L R NL I+ + R++ K A+GV++L N + +R A+ E
Sbjct: 198 KGRRSSTARGYLDLAKPRPNLTIVTHALTDRILFS--GKRAVGVQWLRNDQPQRATARRE 255
Query: 559 VIVCAGAVDSPRILLLSGIGPREELRRLNIAPIHDLPGVGKNLHNHVAHFLNFFINDTDT 618
V++C GA+ SP+IL SG+GP + LR L+I +H LPGVG NL +H+ +L + +
Sbjct: 256 VLLCGGAIASPQILQRSGVGPADLLRSLDIDLVHHLPGVGANLQDHLEMYLQYECKKPVS 315
Query: 619 TALNWATAMEYLLFRDGLMSGTGLS-----EVTGFVHSRLSNPAEDNPDLQIFFSGYLAN 673
A + + + L GTG+ E GF+ S+ D P+LQ F N
Sbjct: 316 LAPALKLYNQPAIGAEWLFLGTGIGASNQFEAGGFIR---SDAEFDWPNLQYHFLPVAIN 372
Query: 674 CARTGQVGERSDGMNNSTPVPQRTISIFPTVLHPKSRGYLTLKDNNPQTPPLIFARYLTH 733
N S P+ + + + SRG + ++ +P+ P I Y++H
Sbjct: 373 -------------YNGSNPIKAHSFQMHVGSMRSPSRGRIHVRSKDPREHPSILFNYMSH 419
Query: 734 PDDVKTLVDGIKIAIRLTQTAALQKYGFRIDTTPVKGCENLPFGCDAYWECAIRRNTGAE 793
D + I+I + AL Y R + +P + DA + +R +
Sbjct: 420 EQDWREFRAAIRITREIFAQPALAPYSGR-EISPGSALQ-----TDAQIDAFVREHAETA 473
Query: 794 NHQAGSCKMGPASDPSAVVSPELKVHGVDRLRVVDCSIMPAVTSGNTNAPAIMIAEKASD 853
H + S KMG A DP AVV + +VHG++ LR+VD SIMP V +GN NAP IM+AEK +D
Sbjct: 474 YHPSCSNKMGHADDPMAVVDGQGRVHGLEGLRIVDASIMPQVVTGNLNAPTIMMAEKLAD 533
Query: 854 LIK 856
+I+
Sbjct: 534 VIR 536
Score = 56.6 bits (135), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 36/86 (41%), Positives = 53/86 (61%), Gaps = 8/86 (9%)
Query: 139 DYDFIVIGGGSSGAVVANRLSEVPNWRVLLIEAGGDE---PTGTQIP-SMFLNFLGSSID 194
+YD+I+IG GS+G V+A RL+E + VLL+EAGG + TQ+P ++ G +
Sbjct: 6 EYDYIIIGAGSAGNVLATRLTEDADVSVLLLEAGGPDYRLDFRTQMPAALAFPLQGKRYN 65
Query: 195 YGYKTEPEDMACLNNEERRCNWPRGK 220
+ YKT+PE +NN RR + RGK
Sbjct: 66 WAYKTDPEPF--MNN--RRMDCGRGK 87
Score = 51.6 bits (122), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 25/54 (46%), Positives = 35/54 (64%)
Query: 283 IRRNTGAENHQAGSCKMGPASDPSAVVSPELKVHGVDRLRVVDCSIMPAVTSGS 336
+R + H + S KMG A DP AVV + +VHG++ LR+VD SIMP V +G+
Sbjct: 466 VREHAETAYHPSCSNKMGHADDPMAVVDGQGRVHGLEGLRIVDASIMPQVVTGN 519
Score = 33.9 bits (76), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 13/22 (59%), Positives = 19/22 (86%)
Query: 61 DYDFIVIGGGSSGAVVANRLSE 82
+YD+I+IG GS+G V+A RL+E
Sbjct: 6 EYDYIIIGAGSAGNVLATRLTE 27
>sp|B3PTE0|BETA_RHIE6 Choline dehydrogenase OS=Rhizobium etli (strain CIAT 652) GN=betA
PE=3 SV=1
Length = 549
Score = 237 bits (605), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 157/496 (31%), Positives = 241/496 (48%), Gaps = 54/496 (10%)
Query: 390 VLGGTSVLNGMMYIRGSRADYDNWAKAGNPGWSYQDVLPYFLKSEDNQQATMMDQGFHGV 449
V+GG+S +NGM+Y+RG D++ W + G GW+Y DVLPYF + E + ++G+ G
Sbjct: 82 VIGGSSSINGMVYVRGHAEDFNRWEELGASGWAYADVLPYFKRMEHSHGG---EEGWRGT 138
Query: 450 GGYLTVTQFPYHPPLSHSILQGAMELGMPVRD-LNGVSHTGFMIAQTTTRNGSRLSTSKA 508
G L V + + PL + ++ + G D NG GF + + T +G R S + A
Sbjct: 139 DGPLHVQRGGFTNPLFRAFIEAGKQAGFETTDDYNGSKQEGFGLMEQTIFSGRRWSAANA 198
Query: 509 FLRPIISRNNLHILLNTTVTRVIVDPLTKAAIGVEFLTNGRLERLQAKNEVIVCAGAVDS 568
+L+P + R N+ ++ VI D A GVE G++E ++A EVIV A + +S
Sbjct: 199 YLKPALKRKNVGMVYGLARKIVIED---GRATGVEIERGGKVEVVKATREVIVSASSFNS 255
Query: 569 PRILLLSGIGPREELRRLNIAPIHDLPGVGKNLHNHVAHFLNFFINDTDT------TALN 622
P++L+LSGIGP + L + IA D PGVG NL +H + F+ T + L
Sbjct: 256 PKLLMLSGIGPGQHLNDMGIAVKADRPGVGANLQDH----MEFYFQQVSTKPVSLYSWLP 311
Query: 623 W----ATAMEYLLFRDGLMSGTGLSEVTGFVHSRLSNPAEDNPDLQIFFSGYLANCARTG 678
W ++LL + GL + E F+ S P PD+Q F + G
Sbjct: 312 WFWQGVAGAQWLLSKGGLGASNQF-EACAFLRS---APGLKQPDIQYHF--LPVAISYDG 365
Query: 679 QVGERSDGMNNSTPVPQRTISIFPTVLHPKSRGYLTLKDNNPQTPPLIFARYLTHPDDVK 738
+ +S G + KSRG +TL+ +P+ P++ Y++HP+D +
Sbjct: 366 KAAAKSHGFQ-----------VHVGYNLSKSRGSVTLRSPDPKAEPVLRFNYMSHPEDWE 414
Query: 739 TLVDGIKIAIRLTQTAALQKYGFRIDTTPVKGCENLPFGCDAYWECAIRRNTGAENHQAG 798
+++ + A Y + P +G ++ D + +R + + H G
Sbjct: 415 KFRHCVRLTREIFGQTAFDAY-RGPEIQPGEGVQS-----DEQIDAFLREHLESAYHPCG 468
Query: 799 SCKMGPASDPSAVVSPELKVHGVDRLRVVDCSIMPAVTSGNTNAPAIMIAEKASDLI--- 855
+CKMG DP AVV P+ +V GVD LRV D SI P VT GN N P+IM EKA+D I
Sbjct: 469 TCKMGAKDDPMAVVDPQTRVIGVDGLRVADSSIFPHVTYGNLNGPSIMTGEKAADHILGK 528
Query: 856 -------KQQWIGKRA 864
++ WI RA
Sbjct: 529 QPLARSNQEPWINPRA 544
Score = 55.8 bits (133), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/54 (50%), Positives = 34/54 (62%)
Query: 283 IRRNTGAENHQAGSCKMGPASDPSAVVSPELKVHGVDRLRVVDCSIMPAVTSGS 336
+R + + H G+CKMG DP AVV P+ +V GVD LRV D SI P VT G+
Sbjct: 456 LREHLESAYHPCGTCKMGAKDDPMAVVDPQTRVIGVDGLRVADSSIFPHVTYGN 509
Score = 51.2 bits (121), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 37/83 (44%), Positives = 49/83 (59%), Gaps = 6/83 (7%)
Query: 141 DFIVIGGGSSGAVVANRLSEVPNWRVLLIEAGG-DEPTGTQIPSMFLNFLG-SSIDYGYK 198
DF++IG GS+G+ +A RLSE VL+IEAGG D Q+P+ + ++GY
Sbjct: 4 DFVIIGSGSAGSALAYRLSEDGKNSVLVIEAGGSDFGPFIQMPAALAWPMSMKRYNWGYL 63
Query: 199 TEPEDMACLNNEERRCNWPRGKV 221
+EPE LNN RR PRGKV
Sbjct: 64 SEPE--PNLNN--RRITAPRGKV 82
>sp|B5Z1R0|BETA_ECO5E Choline dehydrogenase OS=Escherichia coli O157:H7 (strain EC4115 /
EHEC) GN=betA PE=3 SV=1
Length = 562
Score = 236 bits (602), Expect = 5e-61, Method: Compositional matrix adjust.
Identities = 166/487 (34%), Positives = 242/487 (49%), Gaps = 44/487 (9%)
Query: 383 VSCLLSPVLGGTSVLNGMMYIRGSRADYDNWAKA-GNPGWSYQDVLPYFLKSEDNQQATM 441
+ C LGG+S++NGM YIRG+ D DNWAK G WSY D LPY+ K+E +
Sbjct: 77 MECGRGKGLGGSSLINGMCYIRGNAMDLDNWAKEPGLENWSYLDCLPYYRKAETRD---V 133
Query: 442 MDQGFHGVGGYLTVT-QFPYHPPLSHSILQGAMELGMP-VRDLNGVSHTGFM-IAQTTTR 498
+ +HG G ++VT P PL ++++ ++ G P DLNG GF + +T T
Sbjct: 134 GENDYHGGDGPVSVTTSKPGVNPLFEAMIEAGVQAGYPRTDDLNGYQQEGFGPMDRTVTP 193
Query: 499 NGSRLSTSKAFLRPIISRNNLHILLNTTVTRVIVDPLTKAAIGVEFLTNGRL--ERLQAK 556
G R ST++ +L SR NL I + +I D K A+GVE+L R A
Sbjct: 194 QGRRASTARGYLDQAKSRPNLTIRTHAMTDHIIFD--CKRAVGVEWLEGDSTIPTRATAN 251
Query: 557 NEVIVCAGAVDSPRILLLSGIGPREELRRLNIAPIHDLPGVGKNLHNHVAHFLNFFINDT 616
EV++CAGA+ SP+IL SG+G E L +I +HDLPGVG+NL +H+ +L + +
Sbjct: 252 KEVLLCAGAIASPQILQRSGVGNAELLAEFDIPLVHDLPGVGENLQDHLEMYLQYECKEP 311
Query: 617 DTT--ALNWATAMEYLLFRDGLMSGTGLS-----EVTGFVHSRLSNPAEDNPDLQIFFSG 669
+ AL W + + + L GTG+ E GF+ SR P++Q F
Sbjct: 312 VSLYPALQWWNQPK--IGAEWLFGGTGVGASNHFEAGGFIRSREEFAW---PNIQYHFLP 366
Query: 670 YLANCARTGQVGERSDGMNNSTPVPQRTISIFPTVLHPKSRGYLTLKDNNPQTPPLIFAR 729
N N S V + + SRG++ +K +P P I
Sbjct: 367 VAIN-------------YNGSNAVKEHGFQCHVGSMRSPSRGHVRIKSRDPHQHPAILFN 413
Query: 730 YLTHPDDVKTLVDGIKIAIRLTQTAALQKYGFRIDTTPVKGCENLPFGCDAYWECAIRRN 789
Y++H D + D I+I + AL +Y R + +P C+ D + +R +
Sbjct: 414 YMSHEQDWQEFRDAIRITREIMHQPALDQYRGR-EISPGTECQ-----TDEQLDEFVRNH 467
Query: 790 TGAENHQAGSCKMGPASDPSAVVSPELKVHGVDRLRVVDCSIMPAVTSGNTNAPAIMIAE 849
H G+CKMG D +VV E +VHG++ LRVVD SIMP + +GN NA IMI E
Sbjct: 468 AETAFHPCGTCKMG--YDEMSVVDGEGRVHGLEGLRVVDASIMPQIITGNLNATTIMIGE 525
Query: 850 KASDLIK 856
K +D+I+
Sbjct: 526 KMADMIR 532
Score = 58.5 bits (140), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 36/85 (42%), Positives = 51/85 (60%), Gaps = 8/85 (9%)
Query: 140 YDFIVIGGGSSGAVVANRLSEVPNWRVLLIEAGGDE---PTGTQIP-SMFLNFLGSSIDY 195
+D+I+IG GS+G V+A RL+E PN VLL+EAGG + TQ+P ++ G ++
Sbjct: 3 FDYIIIGAGSAGNVLATRLTEDPNTSVLLLEAGGPDYRFDFRTQMPAALAFPLQGKRYNW 62
Query: 196 GYKTEPEDMACLNNEERRCNWPRGK 220
Y+TEPE +NN C RGK
Sbjct: 63 AYETEPEPF--MNNRRMECG--RGK 83
Score = 47.8 bits (112), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 24/54 (44%), Positives = 34/54 (62%), Gaps = 2/54 (3%)
Query: 283 IRRNTGAENHQAGSCKMGPASDPSAVVSPELKVHGVDRLRVVDCSIMPAVTSGS 336
+R + H G+CKMG D +VV E +VHG++ LRVVD SIMP + +G+
Sbjct: 464 VRNHAETAFHPCGTCKMG--YDEMSVVDGEGRVHGLEGLRVVDASIMPQIITGN 515
>sp|Q8X6C6|BETA_ECO57 Choline dehydrogenase OS=Escherichia coli O157:H7 GN=betA PE=3 SV=1
Length = 562
Score = 236 bits (602), Expect = 5e-61, Method: Compositional matrix adjust.
Identities = 166/487 (34%), Positives = 242/487 (49%), Gaps = 44/487 (9%)
Query: 383 VSCLLSPVLGGTSVLNGMMYIRGSRADYDNWAKA-GNPGWSYQDVLPYFLKSEDNQQATM 441
+ C LGG+S++NGM YIRG+ D DNWAK G WSY D LPY+ K+E +
Sbjct: 77 MECGRGKGLGGSSLINGMCYIRGNAMDLDNWAKEPGLENWSYLDCLPYYRKAETRD---V 133
Query: 442 MDQGFHGVGGYLTVT-QFPYHPPLSHSILQGAMELGMP-VRDLNGVSHTGFM-IAQTTTR 498
+ +HG G ++VT P PL ++++ ++ G P DLNG GF + +T T
Sbjct: 134 GENDYHGGDGPVSVTTSKPGVNPLFEAMIEAGVQAGYPRTDDLNGYQQEGFGPMDRTVTP 193
Query: 499 NGSRLSTSKAFLRPIISRNNLHILLNTTVTRVIVDPLTKAAIGVEFLTNGRL--ERLQAK 556
G R ST++ +L SR NL I + +I D K A+GVE+L R A
Sbjct: 194 QGRRASTARGYLDQAKSRPNLTIRTHAMTDHIIFD--CKRAVGVEWLEGDSTIPTRATAN 251
Query: 557 NEVIVCAGAVDSPRILLLSGIGPREELRRLNIAPIHDLPGVGKNLHNHVAHFLNFFINDT 616
EV++CAGA+ SP+IL SG+G E L +I +HDLPGVG+NL +H+ +L + +
Sbjct: 252 KEVLLCAGAIASPQILQRSGVGNAELLAEFDIPLVHDLPGVGENLQDHLEMYLQYECKEP 311
Query: 617 DTT--ALNWATAMEYLLFRDGLMSGTGLS-----EVTGFVHSRLSNPAEDNPDLQIFFSG 669
+ AL W + + + L GTG+ E GF+ SR P++Q F
Sbjct: 312 VSLYPALQWWNQPK--IGAEWLFGGTGVGASNHFEAGGFIRSREEFAW---PNIQYHFLP 366
Query: 670 YLANCARTGQVGERSDGMNNSTPVPQRTISIFPTVLHPKSRGYLTLKDNNPQTPPLIFAR 729
N N S V + + SRG++ +K +P P I
Sbjct: 367 VAIN-------------YNGSNAVKEHGFQCHVGSMRSPSRGHVRIKSRDPHQHPAILFN 413
Query: 730 YLTHPDDVKTLVDGIKIAIRLTQTAALQKYGFRIDTTPVKGCENLPFGCDAYWECAIRRN 789
Y++H D + D I+I + AL +Y R + +P C+ D + +R +
Sbjct: 414 YMSHEQDWQEFRDAIRITREIMHQPALDQYRGR-EISPGTECQ-----TDEQLDEFVRNH 467
Query: 790 TGAENHQAGSCKMGPASDPSAVVSPELKVHGVDRLRVVDCSIMPAVTSGNTNAPAIMIAE 849
H G+CKMG D +VV E +VHG++ LRVVD SIMP + +GN NA IMI E
Sbjct: 468 AETAFHPCGTCKMG--YDEMSVVDGEGRVHGLEGLRVVDASIMPQIITGNLNATTIMIGE 525
Query: 850 KASDLIK 856
K +D+I+
Sbjct: 526 KMADMIR 532
Score = 58.5 bits (140), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 36/85 (42%), Positives = 51/85 (60%), Gaps = 8/85 (9%)
Query: 140 YDFIVIGGGSSGAVVANRLSEVPNWRVLLIEAGGDE---PTGTQIP-SMFLNFLGSSIDY 195
+D+I+IG GS+G V+A RL+E PN VLL+EAGG + TQ+P ++ G ++
Sbjct: 3 FDYIIIGAGSAGNVLATRLTEDPNTSVLLLEAGGPDYRFDFRTQMPAALAFPLQGKRYNW 62
Query: 196 GYKTEPEDMACLNNEERRCNWPRGK 220
Y+TEPE +NN C RGK
Sbjct: 63 AYETEPEPF--MNNRRMECG--RGK 83
Score = 47.8 bits (112), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 24/54 (44%), Positives = 34/54 (62%), Gaps = 2/54 (3%)
Query: 283 IRRNTGAENHQAGSCKMGPASDPSAVVSPELKVHGVDRLRVVDCSIMPAVTSGS 336
+R + H G+CKMG D +VV E +VHG++ LRVVD SIMP + +G+
Sbjct: 464 VRNHAETAFHPCGTCKMG--YDEMSVVDGEGRVHGLEGLRVVDASIMPQIITGN 515
>sp|B7N8L3|BETA_ECOLU Choline dehydrogenase OS=Escherichia coli O17:K52:H18 (strain
UMN026 / ExPEC) GN=betA PE=3 SV=1
Length = 556
Score = 236 bits (602), Expect = 6e-61, Method: Compositional matrix adjust.
Identities = 166/487 (34%), Positives = 243/487 (49%), Gaps = 44/487 (9%)
Query: 383 VSCLLSPVLGGTSVLNGMMYIRGSRADYDNWAKA-GNPGWSYQDVLPYFLKSEDNQQATM 441
+ C LGG+S++NGM YIRG+ D DNWA+ G WSY D LPY+ K+E +
Sbjct: 77 MECGRGKGLGGSSLINGMCYIRGNALDLDNWAQEPGLENWSYLDCLPYYRKAETRD---V 133
Query: 442 MDQGFHGVGGYLTVT-QFPYHPPLSHSILQGAMELGMP-VRDLNGVSHTGFM-IAQTTTR 498
+ +HG G ++VT P PL ++++ ++ G P DLNG GF + +T T
Sbjct: 134 GENDYHGGDGPVSVTTSKPGVNPLFEAMIEAGVQAGYPRTDDLNGYQQEGFGPMDRTVTP 193
Query: 499 NGSRLSTSKAFLRPIISRNNLHILLNTTVTRVIVDPLTKAAIGVEFLTNGRL--ERLQAK 556
+G R ST++ +L SR NL I + +I D K A+GVE+L R A
Sbjct: 194 HGRRASTARGYLDQAKSRPNLTIRTHAMTDHIIFD--GKRAVGVEWLEGDSTIPTRATAN 251
Query: 557 NEVIVCAGAVDSPRILLLSGIGPREELRRLNIAPIHDLPGVGKNLHNHVAHFLNFFINDT 616
EV++CAGA+ SP+IL SG+G E L +I +HDLPGVG+NL +H+ +L + +
Sbjct: 252 KEVLLCAGAIASPQILQRSGVGSAELLAEFDIPLVHDLPGVGENLQDHLEMYLQYECKEP 311
Query: 617 DTT--ALNWATAMEYLLFRDGLMSGTGLS-----EVTGFVHSRLSNPAEDNPDLQIFFSG 669
+ AL W + + + L GTG+ E GF+ SR P++Q F
Sbjct: 312 VSLYPALQWWNQPK--IGAEWLFGGTGVGASNHFEAGGFIRSREEFAW---PNIQYHFLP 366
Query: 670 YLANCARTGQVGERSDGMNNSTPVPQRTISIFPTVLHPKSRGYLTLKDNNPQTPPLIFAR 729
N N S V + + SRG++ +K +P P I
Sbjct: 367 VAIN-------------YNGSNAVKEHGFQCHVGSMRSPSRGHVRIKSRDPHQHPAILFN 413
Query: 730 YLTHPDDVKTLVDGIKIAIRLTQTAALQKYGFRIDTTPVKGCENLPFGCDAYWECAIRRN 789
Y++H D + D I+I + AL +Y R + +P C+ D + +R +
Sbjct: 414 YMSHEQDWQEFRDAIRITREIMHQPALDQYRGR-EISPGVECQ-----TDEQLDEFVRNH 467
Query: 790 TGAENHQAGSCKMGPASDPSAVVSPELKVHGVDRLRVVDCSIMPAVTSGNTNAPAIMIAE 849
H G+CKMG D AVV E +VHG++ LRVVD SIMP + +GN NA IMI E
Sbjct: 468 AETAFHPCGTCKMG--YDEMAVVDGEGRVHGLEGLRVVDASIMPQIITGNLNATTIMIGE 525
Query: 850 KASDLIK 856
K +D+I+
Sbjct: 526 KMADMIR 532
Score = 58.5 bits (140), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 36/85 (42%), Positives = 51/85 (60%), Gaps = 8/85 (9%)
Query: 140 YDFIVIGGGSSGAVVANRLSEVPNWRVLLIEAGGDE---PTGTQIP-SMFLNFLGSSIDY 195
+D+I+IG GS+G V+A RL+E PN VLL+EAGG + TQ+P ++ G ++
Sbjct: 3 FDYIIIGAGSAGNVLATRLTEDPNTTVLLLEAGGPDYRFDFRTQMPAALAFPLQGKRYNW 62
Query: 196 GYKTEPEDMACLNNEERRCNWPRGK 220
Y+TEPE +NN C RGK
Sbjct: 63 AYETEPEPF--MNNRRMECG--RGK 83
Score = 48.9 bits (115), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/54 (46%), Positives = 34/54 (62%), Gaps = 2/54 (3%)
Query: 283 IRRNTGAENHQAGSCKMGPASDPSAVVSPELKVHGVDRLRVVDCSIMPAVTSGS 336
+R + H G+CKMG D AVV E +VHG++ LRVVD SIMP + +G+
Sbjct: 464 VRNHAETAFHPCGTCKMG--YDEMAVVDGEGRVHGLEGLRVVDASIMPQIITGN 515
>sp|Q3JLL7|BETA_BURP1 Choline dehydrogenase OS=Burkholderia pseudomallei (strain 1710b)
GN=betA PE=3 SV=1
Length = 565
Score = 236 bits (602), Expect = 6e-61, Method: Compositional matrix adjust.
Identities = 167/490 (34%), Positives = 241/490 (49%), Gaps = 48/490 (9%)
Query: 383 VSCLLSPVLGGTSVLNGMMYIRGSRADYDNWA-KAGNPGWSYQDVLPYFLKSEDNQQATM 441
+ C LGG+S++NGM YIRG+ DYDNWA G W+Y D LPYF K+E
Sbjct: 80 MECGRGKGLGGSSLINGMCYIRGNALDYDNWATHKGLEDWAYLDCLPYFRKAETRDVGP- 138
Query: 442 MDQGFHGVGGYLTVT-QFPYHPPLSHSILQGAMELGMP-VRDLNGVSHTGFM-IAQTTTR 498
+HG G ++VT P PL ++++ ++ G P DLNG GF + +T T
Sbjct: 139 --NDYHGGDGPVSVTTSKPGVNPLFEAMVEAGVQAGYPRTDDLNGYQQEGFGPMDRTVTP 196
Query: 499 NGSRLSTSKAFLRPIISRNNLHILLNTTVTRVIVDPLTKAAIGVEFLTNGRLERLQAKNE 558
G R ST++ +L +R NL I+ + R++ K A GV FL A+ E
Sbjct: 197 RGRRASTARGYLDQARARPNLEIVTHALADRILFS--GKRATGVTFLHGSARVTAHARRE 254
Query: 559 VIVCAGAVDSPRILLLSGIGPREELRRLNIAPIHDLPGVGKNLHNHVAHFLNFFINDTDT 618
V+VC+GA+ SP++L SG+GP E LR L+I + DLPGVG+NL +H+ ++ F + +
Sbjct: 255 VLVCSGAIASPQLLQRSGVGPGEWLRELDIPVVLDLPGVGRNLQDHLEMYIQFECKEPVS 314
Query: 619 T--ALNWATAMEYLLFRDGLMSGTGLS-----EVTGFVHSRLSNPAEDNPDLQIFFSGYL 671
AL W + L + +++GTGL E GF+ +R +P P++Q F
Sbjct: 315 LYPALKWWNQPKIGL--EWMLNGTGLGASNHFEAGGFIRTRDDDPW---PNIQYHFLPVA 369
Query: 672 ANCARTGQVGERSDGMNNSTPVPQRTISIFPTVLHPKSRGYLTLKDNNPQTPPLIFARYL 731
N N S + + SRG + LK +P P I Y+
Sbjct: 370 IN-------------YNGSNAIEMHGFQAHVGSMRSPSRGRVKLKSRDPHAHPSILFNYM 416
Query: 732 THPDDVKTLVDGIKIAIRLTQTAALQKYGFRIDTTPVKGCENLP---FGCDAYWECAIRR 788
D + D I+ + + AL ++ +G E P D + +R
Sbjct: 417 AEALDWREFRDAIRATREIMRQPALDRF---------RGRELNPGADLKSDNELDTFVRA 467
Query: 789 NTGAENHQAGSCKMGPASDPSAVVSPELKVHGVDRLRVVDCSIMPAVTSGNTNAPAIMIA 848
H + SCKMG D AVV E +VHG+D LRVVD SIMP +T+GN NAP IMIA
Sbjct: 468 RAETAFHPSCSCKMG--YDDMAVVDNEGRVHGIDGLRVVDASIMPIITTGNLNAPTIMIA 525
Query: 849 EKASDLIKQQ 858
EK +D I++
Sbjct: 526 EKIADRIRKH 535
Score = 52.8 bits (125), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 34/87 (39%), Positives = 51/87 (58%), Gaps = 8/87 (9%)
Query: 138 RDYDFIVIGGGSSGAVVANRLSEVPNWRVLLIEAGGDE---PTGTQIPSMFLNFL-GSSI 193
R++D+I+ G GS+G V+A RL+E P VLL+EAGG + TQ+P+ L G
Sbjct: 4 REFDYIICGAGSAGNVLATRLTEDPGVTVLLLEAGGPDYRFDFRTQMPAALAYPLQGRRY 63
Query: 194 DYGYKTEPEDMACLNNEERRCNWPRGK 220
++ Y+T+PE +N+ C RGK
Sbjct: 64 NWAYETDPE--PHMNHRRMECG--RGK 86
Score = 50.1 bits (118), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 26/45 (57%), Positives = 32/45 (71%), Gaps = 2/45 (4%)
Query: 292 HQAGSCKMGPASDPSAVVSPELKVHGVDRLRVVDCSIMPAVTSGS 336
H + SCKMG D AVV E +VHG+D LRVVD SIMP +T+G+
Sbjct: 474 HPSCSCKMG--YDDMAVVDNEGRVHGIDGLRVVDASIMPIITTGN 516
>sp|Q63KK7|BETA_BURPS Choline dehydrogenase OS=Burkholderia pseudomallei (strain K96243)
GN=betA PE=3 SV=1
Length = 565
Score = 236 bits (601), Expect = 9e-61, Method: Compositional matrix adjust.
Identities = 167/490 (34%), Positives = 240/490 (48%), Gaps = 48/490 (9%)
Query: 383 VSCLLSPVLGGTSVLNGMMYIRGSRADYDNWA-KAGNPGWSYQDVLPYFLKSEDNQQATM 441
+ C LGG+S++NGM YIRG+ DYDNWA W+Y D LPYF K+E
Sbjct: 80 MECGRGKGLGGSSLINGMCYIRGNALDYDNWATHKALEDWAYLDCLPYFRKAETRDVGP- 138
Query: 442 MDQGFHGVGGYLTVT-QFPYHPPLSHSILQGAMELGMP-VRDLNGVSHTGFM-IAQTTTR 498
+HG G ++VT P PL ++++ ++ G P DLNG GF + +T T
Sbjct: 139 --NDYHGGDGPVSVTTSKPGVNPLFEAMVEAGVQAGYPRTDDLNGYQQEGFGPMDRTVTP 196
Query: 499 NGSRLSTSKAFLRPIISRNNLHILLNTTVTRVIVDPLTKAAIGVEFLTNGRLERLQAKNE 558
G R ST++ +L +R NL I+ + R++ K A GV FL A+ E
Sbjct: 197 RGRRASTARGYLDQARARPNLEIVTHALADRILFS--GKRATGVTFLHGSARVTAHARRE 254
Query: 559 VIVCAGAVDSPRILLLSGIGPREELRRLNIAPIHDLPGVGKNLHNHVAHFLNFFINDTDT 618
V+VC+GA+ SP++L SG+GP E LR L+I + DLPGVG+NL +H+ ++ F + +
Sbjct: 255 VLVCSGAIASPQLLQRSGVGPGEWLRELDIPVVLDLPGVGRNLQDHLEMYIQFECKEPVS 314
Query: 619 T--ALNWATAMEYLLFRDGLMSGTGLS-----EVTGFVHSRLSNPAEDNPDLQIFFSGYL 671
AL W + L + +++GTGL E GF+ +R +P P++Q F
Sbjct: 315 LYPALKWWNQPKIGL--EWMLNGTGLGASNHFEAGGFIRTRDDDPW---PNIQYHFLPVA 369
Query: 672 ANCARTGQVGERSDGMNNSTPVPQRTISIFPTVLHPKSRGYLTLKDNNPQTPPLIFARYL 731
N N S + + SRG + LK +P P I Y+
Sbjct: 370 IN-------------YNGSNAIEMHGFQAHVGSMRSPSRGRVKLKSRDPHAHPSILFNYM 416
Query: 732 THPDDVKTLVDGIKIAIRLTQTAALQKYGFRIDTTPVKGCENLP---FGCDAYWECAIRR 788
D + D I+ + + AL ++ +G E P D + +R
Sbjct: 417 AEALDWREFRDAIRATREIMRQPALDRF---------RGRELNPGADLKSDNELDTFVRA 467
Query: 789 NTGAENHQAGSCKMGPASDPSAVVSPELKVHGVDRLRVVDCSIMPAVTSGNTNAPAIMIA 848
H + SCKMG D AVV E +VHG+D LRVVD SIMP +T+GN NAP IMIA
Sbjct: 468 RAETAFHPSCSCKMG--YDDMAVVDNEGRVHGIDGLRVVDASIMPIITTGNLNAPTIMIA 525
Query: 849 EKASDLIKQQ 858
EK +D I+Q
Sbjct: 526 EKIADRIRQH 535
Score = 52.8 bits (125), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 34/87 (39%), Positives = 51/87 (58%), Gaps = 8/87 (9%)
Query: 138 RDYDFIVIGGGSSGAVVANRLSEVPNWRVLLIEAGGDE---PTGTQIPSMFLNFL-GSSI 193
R++D+I+ G GS+G V+A RL+E P VLL+EAGG + TQ+P+ L G
Sbjct: 4 REFDYIICGAGSAGNVLATRLTEDPGVTVLLLEAGGPDYRFDFRTQMPAALAYPLQGRRY 63
Query: 194 DYGYKTEPEDMACLNNEERRCNWPRGK 220
++ Y+T+PE +N+ C RGK
Sbjct: 64 NWAYETDPE--PHMNHRRMECG--RGK 86
Score = 50.1 bits (118), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 27/54 (50%), Positives = 34/54 (62%), Gaps = 2/54 (3%)
Query: 283 IRRNTGAENHQAGSCKMGPASDPSAVVSPELKVHGVDRLRVVDCSIMPAVTSGS 336
+R H + SCKMG D AVV E +VHG+D LRVVD SIMP +T+G+
Sbjct: 465 VRARAETAFHPSCSCKMG--YDDMAVVDNEGRVHGIDGLRVVDASIMPIITTGN 516
>sp|A6T613|BETA_KLEP7 Choline dehydrogenase OS=Klebsiella pneumoniae subsp. pneumoniae
(strain ATCC 700721 / MGH 78578) GN=betA PE=3 SV=1
Length = 554
Score = 235 bits (600), Expect = 9e-61, Method: Compositional matrix adjust.
Identities = 168/487 (34%), Positives = 243/487 (49%), Gaps = 44/487 (9%)
Query: 383 VSCLLSPVLGGTSVLNGMMYIRGSRADYDNWAKA-GNPGWSYQDVLPYFLKSEDNQQATM 441
+ C LGG+S++NGM YIRG+ D DNWAK G WSY D LPY+ K+E +
Sbjct: 77 MECGRGKGLGGSSLINGMCYIRGNAMDLDNWAKEPGLEHWSYLDCLPYYRKAETRD---I 133
Query: 442 MDQGFHGVGGYLTVTQ-FPYHPPLSHSILQGAMELGMP-VRDLNGVSHTGFM-IAQTTTR 498
+HG G ++VT P + PL ++++ ++ G P DLNG GF + +T T
Sbjct: 134 GPNDYHGGDGPVSVTTPKPGNNPLFEAMVEAGVQAGYPRTDDLNGYQQEGFGPMDRTVTP 193
Query: 499 NGSRLSTSKAFLRPIISRNNLHILLNTTVTRVIVDPLTKAAIGVEFLTNGRL--ERLQAK 556
G R ST++ +L R NL I + +I K A+GVE+L + A
Sbjct: 194 QGRRASTARGYLDQARGRPNLTIRTHALTDHIIF--AGKRAVGVEWLEGESTIPSKATAN 251
Query: 557 NEVIVCAGAVDSPRILLLSGIGPREELRRLNIAPIHDLPGVGKNLHNHVAHFLNFFINDT 616
EV++CAGA+ SP+IL SG+G E LR+ +I +HDLPGVG+NL +H+ +L + +
Sbjct: 252 KEVLLCAGAIASPQILQRSGVGNPELLRQFDIPVVHDLPGVGENLQDHLEMYLQYECKEP 311
Query: 617 DTT--ALNWATAMEYLLFRDGLMSGTGLS-----EVTGFVHSRLSNPAEDNPDLQIFFSG 669
+ AL W + + + L GTG+ E GF+ SR P++Q F
Sbjct: 312 VSLYPALQWWNQPK--IGAEWLFGGTGIGASNQFEAGGFIRSRAEFAW---PNIQYHFLP 366
Query: 670 YLANCARTGQVGERSDGMNNSTPVPQRTISIFPTVLHPKSRGYLTLKDNNPQTPPLIFAR 729
N N S V + + SRG++ LK +P P I
Sbjct: 367 VAIN-------------YNGSNAVKEHGFQCHVGSMRSPSRGHVRLKSRDPHAHPAILFN 413
Query: 730 YLTHPDDVKTLVDGIKIAIRLTQTAALQKYGFRIDTTPVKGCENLPFGCDAYWECAIRRN 789
Y++H D + D I+I + AL KY R + +P C++ DA + +R +
Sbjct: 414 YMSHEQDWQEFRDAIRITREIMNQPALDKYRGR-EISPGIECQS-----DAELDEFVRNH 467
Query: 790 TGAENHQAGSCKMGPASDPSAVVSPELKVHGVDRLRVVDCSIMPAVTSGNTNAPAIMIAE 849
H G+CKMG D AVV E +VHG++ LRVVD SIMP + +GN NA IMI E
Sbjct: 468 AETAFHPCGTCKMG--YDEMAVVDGEGRVHGLEGLRVVDASIMPQIITGNLNATTIMIGE 525
Query: 850 KASDLIK 856
K +D I+
Sbjct: 526 KMADAIR 532
Score = 58.2 bits (139), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 37/85 (43%), Positives = 51/85 (60%), Gaps = 8/85 (9%)
Query: 140 YDFIVIGGGSSGAVVANRLSEVPNWRVLLIEAGGDE---PTGTQIPSMFLNFL-GSSIDY 195
+D+I+IG GS+G V+A RL+E PN VLL+EAGG + TQ+P+ L G ++
Sbjct: 3 FDYIIIGAGSAGNVLATRLTEDPNTTVLLLEAGGPDYRFDFRTQMPAALAYPLQGKRYNW 62
Query: 196 GYKTEPEDMACLNNEERRCNWPRGK 220
Y+TEPE +NN C RGK
Sbjct: 63 AYETEPEPY--MNNRRMECG--RGK 83
Score = 48.9 bits (115), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/54 (46%), Positives = 34/54 (62%), Gaps = 2/54 (3%)
Query: 283 IRRNTGAENHQAGSCKMGPASDPSAVVSPELKVHGVDRLRVVDCSIMPAVTSGS 336
+R + H G+CKMG D AVV E +VHG++ LRVVD SIMP + +G+
Sbjct: 464 VRNHAETAFHPCGTCKMG--YDEMAVVDGEGRVHGLEGLRVVDASIMPQIITGN 515
>sp|P17444|BETA_ECOLI Choline dehydrogenase OS=Escherichia coli (strain K12) GN=betA PE=1
SV=1
Length = 556
Score = 235 bits (600), Expect = 9e-61, Method: Compositional matrix adjust.
Identities = 166/489 (33%), Positives = 243/489 (49%), Gaps = 44/489 (8%)
Query: 383 VSCLLSPVLGGTSVLNGMMYIRGSRADYDNWAKA-GNPGWSYQDVLPYFLKSEDNQQATM 441
+ C LGG+S++NGM YIRG+ D DNWA+ G WSY D LPY+ K+E M
Sbjct: 77 MECGRGKGLGGSSLINGMCYIRGNALDLDNWAQEPGLENWSYLDCLPYYRKAETRD---M 133
Query: 442 MDQGFHGVGGYLTVT-QFPYHPPLSHSILQGAMELGMP-VRDLNGVSHTGFM-IAQTTTR 498
+ +HG G ++VT P PL ++++ ++ G P DLNG GF + +T T
Sbjct: 134 GENDYHGGDGPVSVTTSKPGVNPLFEAMIEAGVQAGYPRTDDLNGYQQEGFGPMDRTVTP 193
Query: 499 NGSRLSTSKAFLRPIISRNNLHILLNTTVTRVIVDPLTKAAIGVEFLTNGRL--ERLQAK 556
G R ST++ +L SR NL I + +I D K A+GVE+L R A
Sbjct: 194 QGRRASTARGYLDQAKSRPNLTIRTHAMTDHIIFD--GKRAVGVEWLEGDSTIPTRATAN 251
Query: 557 NEVIVCAGAVDSPRILLLSGIGPREELRRLNIAPIHDLPGVGKNLHNHVAHFLNFFINDT 616
EV++CAGA+ SP+IL SG+G E L +I +H+LPGVG+NL +H+ +L + +
Sbjct: 252 KEVLLCAGAIASPQILQRSGVGNAELLAEFDIPLVHELPGVGENLQDHLEMYLQYECKEP 311
Query: 617 DTT--ALNWATAMEYLLFRDGLMSGTGLS-----EVTGFVHSRLSNPAEDNPDLQIFFSG 669
+ AL W + + + L GTG+ E GF+ SR P++Q F
Sbjct: 312 VSLYPALQWWNQPK--IGAEWLFGGTGVGASNHFEAGGFIRSREEFAW---PNIQYHFLP 366
Query: 670 YLANCARTGQVGERSDGMNNSTPVPQRTISIFPTVLHPKSRGYLTLKDNNPQTPPLIFAR 729
N N S V + + SRG++ +K +P P I
Sbjct: 367 VAIN-------------YNGSNAVKEHGFQCHVGSMRSPSRGHVRIKSRDPHQHPAILFN 413
Query: 730 YLTHPDDVKTLVDGIKIAIRLTQTAALQKYGFRIDTTPVKGCENLPFGCDAYWECAIRRN 789
Y++H D + D I+I + AL +Y R + +P C+ D + +R +
Sbjct: 414 YMSHEQDWQEFRDAIRITREIMHQPALDQYRGR-EISPGVECQ-----TDEQLDEFVRNH 467
Query: 790 TGAENHQAGSCKMGPASDPSAVVSPELKVHGVDRLRVVDCSIMPAVTSGNTNAPAIMIAE 849
H G+CKMG D +VV E +VHG++ LRVVD SIMP + +GN NA IMI E
Sbjct: 468 AETAFHPCGTCKMG--YDEMSVVDGEGRVHGLEGLRVVDASIMPQIITGNLNATTIMIGE 525
Query: 850 KASDLIKQQ 858
K +D+I+ Q
Sbjct: 526 KIADMIRGQ 534
Score = 58.5 bits (140), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 36/85 (42%), Positives = 51/85 (60%), Gaps = 8/85 (9%)
Query: 140 YDFIVIGGGSSGAVVANRLSEVPNWRVLLIEAGGDE---PTGTQIP-SMFLNFLGSSIDY 195
+D+I+IG GS+G V+A RL+E PN VLL+EAGG + TQ+P ++ G ++
Sbjct: 3 FDYIIIGAGSAGNVLATRLTEDPNTSVLLLEAGGPDYRFDFRTQMPAALAFPLQGKRYNW 62
Query: 196 GYKTEPEDMACLNNEERRCNWPRGK 220
Y+TEPE +NN C RGK
Sbjct: 63 AYETEPEPF--MNNRRMECG--RGK 83
Score = 47.8 bits (112), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 24/54 (44%), Positives = 34/54 (62%), Gaps = 2/54 (3%)
Query: 283 IRRNTGAENHQAGSCKMGPASDPSAVVSPELKVHGVDRLRVVDCSIMPAVTSGS 336
+R + H G+CKMG D +VV E +VHG++ LRVVD SIMP + +G+
Sbjct: 464 VRNHAETAFHPCGTCKMG--YDEMSVVDGEGRVHGLEGLRVVDASIMPQIITGN 515
>sp|B1J0W6|BETA_ECOLC Choline dehydrogenase OS=Escherichia coli (strain ATCC 8739 / DSM
1576 / Crooks) GN=betA PE=3 SV=1
Length = 556
Score = 235 bits (600), Expect = 9e-61, Method: Compositional matrix adjust.
Identities = 166/489 (33%), Positives = 243/489 (49%), Gaps = 44/489 (8%)
Query: 383 VSCLLSPVLGGTSVLNGMMYIRGSRADYDNWAKA-GNPGWSYQDVLPYFLKSEDNQQATM 441
+ C LGG+S++NGM YIRG+ D DNWA+ G WSY D LPY+ K+E M
Sbjct: 77 MECGRGKGLGGSSLINGMCYIRGNALDLDNWAQEPGLENWSYLDCLPYYRKAETRD---M 133
Query: 442 MDQGFHGVGGYLTVT-QFPYHPPLSHSILQGAMELGMP-VRDLNGVSHTGFM-IAQTTTR 498
+ +HG G ++VT P PL ++++ ++ G P DLNG GF + +T T
Sbjct: 134 GENDYHGGDGPVSVTTSKPGVNPLFEAMIEAGVQAGYPRTDDLNGYQQEGFGPMDRTVTP 193
Query: 499 NGSRLSTSKAFLRPIISRNNLHILLNTTVTRVIVDPLTKAAIGVEFLTNGRL--ERLQAK 556
G R ST++ +L SR NL I + +I D K A+GVE+L R A
Sbjct: 194 QGRRASTARGYLDQAKSRPNLTIRTHAMTDHIIFD--GKRAVGVEWLEGDSTIPTRATAN 251
Query: 557 NEVIVCAGAVDSPRILLLSGIGPREELRRLNIAPIHDLPGVGKNLHNHVAHFLNFFINDT 616
EV++CAGA+ SP+IL SG+G E L +I +H+LPGVG+NL +H+ +L + +
Sbjct: 252 KEVLLCAGAIASPQILQRSGVGNAELLAEFDIPLVHELPGVGENLQDHLEMYLQYECKEP 311
Query: 617 DTT--ALNWATAMEYLLFRDGLMSGTGLS-----EVTGFVHSRLSNPAEDNPDLQIFFSG 669
+ AL W + + + L GTG+ E GF+ SR P++Q F
Sbjct: 312 VSLYPALQWWNQPK--IGAEWLFGGTGVGASNHFEAGGFIRSREEFAW---PNIQYHFLP 366
Query: 670 YLANCARTGQVGERSDGMNNSTPVPQRTISIFPTVLHPKSRGYLTLKDNNPQTPPLIFAR 729
N N S V + + SRG++ +K +P P I
Sbjct: 367 VAIN-------------YNGSNAVKEHGFQCHVGSMRSPSRGHVRIKSRDPHQHPAILFN 413
Query: 730 YLTHPDDVKTLVDGIKIAIRLTQTAALQKYGFRIDTTPVKGCENLPFGCDAYWECAIRRN 789
Y++H D + D I+I + AL +Y R + +P C+ D + +R +
Sbjct: 414 YMSHEQDWQEFRDAIRITREIMHQPALDQYRGR-EISPGVECQ-----TDEQLDEFVRNH 467
Query: 790 TGAENHQAGSCKMGPASDPSAVVSPELKVHGVDRLRVVDCSIMPAVTSGNTNAPAIMIAE 849
H G+CKMG D +VV E +VHG++ LRVVD SIMP + +GN NA IMI E
Sbjct: 468 AETAFHPCGTCKMG--YDEMSVVDGEGRVHGLEGLRVVDASIMPQIITGNLNATTIMIGE 525
Query: 850 KASDLIKQQ 858
K +D+I+ Q
Sbjct: 526 KIADMIRGQ 534
Score = 58.5 bits (140), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 36/85 (42%), Positives = 51/85 (60%), Gaps = 8/85 (9%)
Query: 140 YDFIVIGGGSSGAVVANRLSEVPNWRVLLIEAGGDE---PTGTQIP-SMFLNFLGSSIDY 195
+D+I+IG GS+G V+A RL+E PN VLL+EAGG + TQ+P ++ G ++
Sbjct: 3 FDYIIIGAGSAGNVLATRLTEDPNTSVLLLEAGGPDYRFDFRTQMPAALAFPLQGKRYNW 62
Query: 196 GYKTEPEDMACLNNEERRCNWPRGK 220
Y+TEPE +NN C RGK
Sbjct: 63 AYETEPEPF--MNNRRMECG--RGK 83
Score = 47.8 bits (112), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 24/54 (44%), Positives = 34/54 (62%), Gaps = 2/54 (3%)
Query: 283 IRRNTGAENHQAGSCKMGPASDPSAVVSPELKVHGVDRLRVVDCSIMPAVTSGS 336
+R + H G+CKMG D +VV E +VHG++ LRVVD SIMP + +G+
Sbjct: 464 VRNHAETAFHPCGTCKMG--YDEMSVVDGEGRVHGLEGLRVVDASIMPQIITGN 515
>sp|B1XE52|BETA_ECODH Choline dehydrogenase OS=Escherichia coli (strain K12 / DH10B)
GN=betA PE=3 SV=1
Length = 556
Score = 235 bits (600), Expect = 9e-61, Method: Compositional matrix adjust.
Identities = 166/489 (33%), Positives = 243/489 (49%), Gaps = 44/489 (8%)
Query: 383 VSCLLSPVLGGTSVLNGMMYIRGSRADYDNWAKA-GNPGWSYQDVLPYFLKSEDNQQATM 441
+ C LGG+S++NGM YIRG+ D DNWA+ G WSY D LPY+ K+E M
Sbjct: 77 MECGRGKGLGGSSLINGMCYIRGNALDLDNWAQEPGLENWSYLDCLPYYRKAETRD---M 133
Query: 442 MDQGFHGVGGYLTVT-QFPYHPPLSHSILQGAMELGMP-VRDLNGVSHTGFM-IAQTTTR 498
+ +HG G ++VT P PL ++++ ++ G P DLNG GF + +T T
Sbjct: 134 GENDYHGGDGPVSVTTSKPGVNPLFEAMIEAGVQAGYPRTDDLNGYQQEGFGPMDRTVTP 193
Query: 499 NGSRLSTSKAFLRPIISRNNLHILLNTTVTRVIVDPLTKAAIGVEFLTNGRL--ERLQAK 556
G R ST++ +L SR NL I + +I D K A+GVE+L R A
Sbjct: 194 QGRRASTARGYLDQAKSRPNLTIRTHAMTDHIIFD--GKRAVGVEWLEGDSTIPTRATAN 251
Query: 557 NEVIVCAGAVDSPRILLLSGIGPREELRRLNIAPIHDLPGVGKNLHNHVAHFLNFFINDT 616
EV++CAGA+ SP+IL SG+G E L +I +H+LPGVG+NL +H+ +L + +
Sbjct: 252 KEVLLCAGAIASPQILQRSGVGNAELLAEFDIPLVHELPGVGENLQDHLEMYLQYECKEP 311
Query: 617 DTT--ALNWATAMEYLLFRDGLMSGTGLS-----EVTGFVHSRLSNPAEDNPDLQIFFSG 669
+ AL W + + + L GTG+ E GF+ SR P++Q F
Sbjct: 312 VSLYPALQWWNQPK--IGAEWLFGGTGVGASNHFEAGGFIRSREEFAW---PNIQYHFLP 366
Query: 670 YLANCARTGQVGERSDGMNNSTPVPQRTISIFPTVLHPKSRGYLTLKDNNPQTPPLIFAR 729
N N S V + + SRG++ +K +P P I
Sbjct: 367 VAIN-------------YNGSNAVKEHGFQCHVGSMRSPSRGHVRIKSRDPHQHPAILFN 413
Query: 730 YLTHPDDVKTLVDGIKIAIRLTQTAALQKYGFRIDTTPVKGCENLPFGCDAYWECAIRRN 789
Y++H D + D I+I + AL +Y R + +P C+ D + +R +
Sbjct: 414 YMSHEQDWQEFRDAIRITREIMHQPALDQYRGR-EISPGVECQ-----TDEQLDEFVRNH 467
Query: 790 TGAENHQAGSCKMGPASDPSAVVSPELKVHGVDRLRVVDCSIMPAVTSGNTNAPAIMIAE 849
H G+CKMG D +VV E +VHG++ LRVVD SIMP + +GN NA IMI E
Sbjct: 468 AETAFHPCGTCKMG--YDEMSVVDGEGRVHGLEGLRVVDASIMPQIITGNLNATTIMIGE 525
Query: 850 KASDLIKQQ 858
K +D+I+ Q
Sbjct: 526 KIADMIRGQ 534
Score = 58.5 bits (140), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 36/85 (42%), Positives = 51/85 (60%), Gaps = 8/85 (9%)
Query: 140 YDFIVIGGGSSGAVVANRLSEVPNWRVLLIEAGGDE---PTGTQIP-SMFLNFLGSSIDY 195
+D+I+IG GS+G V+A RL+E PN VLL+EAGG + TQ+P ++ G ++
Sbjct: 3 FDYIIIGAGSAGNVLATRLTEDPNTSVLLLEAGGPDYRFDFRTQMPAALAFPLQGKRYNW 62
Query: 196 GYKTEPEDMACLNNEERRCNWPRGK 220
Y+TEPE +NN C RGK
Sbjct: 63 AYETEPEPF--MNNRRMECG--RGK 83
Score = 47.8 bits (112), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 24/54 (44%), Positives = 34/54 (62%), Gaps = 2/54 (3%)
Query: 283 IRRNTGAENHQAGSCKMGPASDPSAVVSPELKVHGVDRLRVVDCSIMPAVTSGS 336
+R + H G+CKMG D +VV E +VHG++ LRVVD SIMP + +G+
Sbjct: 464 VRNHAETAFHPCGTCKMG--YDEMSVVDGEGRVHGLEGLRVVDASIMPQIITGN 515
>sp|Q0TKW1|BETA_ECOL5 Choline dehydrogenase OS=Escherichia coli O6:K15:H31 (strain 536 /
UPEC) GN=betA PE=3 SV=2
Length = 556
Score = 235 bits (600), Expect = 9e-61, Method: Compositional matrix adjust.
Identities = 167/487 (34%), Positives = 243/487 (49%), Gaps = 44/487 (9%)
Query: 383 VSCLLSPVLGGTSVLNGMMYIRGSRADYDNWAKA-GNPGWSYQDVLPYFLKSEDNQQATM 441
+ C LGG+S++NGM YIRG+ D DNWA+ G WSY D LPY+ K+E +
Sbjct: 77 MECGRGKGLGGSSLINGMCYIRGNALDLDNWAQEPGLENWSYLDCLPYYRKAETRD---V 133
Query: 442 MDQGFHGVGGYLTV-TQFPYHPPLSHSILQGAMELGMP-VRDLNGVSHTGFM-IAQTTTR 498
+ +HG G ++V T P PL ++++ M+ G P DLNG GF + +T T
Sbjct: 134 GENDYHGGDGPVSVITSKPGVNPLFEAMIEAGMQAGYPRTDDLNGYQQEGFGPMDRTVTP 193
Query: 499 NGSRLSTSKAFLRPIISRNNLHILLNTTVTRVIVDPLTKAAIGVEFLTNGRL--ERLQAK 556
+G R STS+ +L SR NL I + +I D K A+GVE+L R A
Sbjct: 194 HGRRASTSRGYLDQAKSRPNLTIRTHAMTDHIIFD--GKRAVGVEWLEGDSTIPTRAAAN 251
Query: 557 NEVIVCAGAVDSPRILLLSGIGPREELRRLNIAPIHDLPGVGKNLHNHVAHFLNFFINDT 616
EV++CAGA+ SP+IL SG+G E L +I +H+LPGVG+NL +H+ +L + +
Sbjct: 252 KEVLLCAGAIASPQILQRSGVGNAELLAEFDIPLVHELPGVGENLQDHLEMYLQYECKEP 311
Query: 617 DTT--ALNWATAMEYLLFRDGLMSGTGLS-----EVTGFVHSRLSNPAEDNPDLQIFFSG 669
+ AL W + + + L GTG+ E GF+ SR P++Q F
Sbjct: 312 VSLYPALQWWN--QPRIGAEWLFGGTGVGASNHFEAGGFIRSREEFAW---PNIQYHFLP 366
Query: 670 YLANCARTGQVGERSDGMNNSTPVPQRTISIFPTVLHPKSRGYLTLKDNNPQTPPLIFAR 729
N N S V + + SRG++ +K +P P I
Sbjct: 367 VAIN-------------YNGSNAVKEHGFQCHVGSMRSPSRGHVRIKSRDPHQHPGILFN 413
Query: 730 YLTHPDDVKTLVDGIKIAIRLTQTAALQKYGFRIDTTPVKGCENLPFGCDAYWECAIRRN 789
Y++H D + D I+I + AL +Y R + +P C+ D + +R +
Sbjct: 414 YMSHEQDWQEFRDAIRITREIMHQPALDQYRGR-EISPGVECQ-----TDEQLDEFVRNH 467
Query: 790 TGAENHQAGSCKMGPASDPSAVVSPELKVHGVDRLRVVDCSIMPAVTSGNTNAPAIMIAE 849
H G+CKMG D AVV E +VHG++ LRVVD SIMP + +GN NA IMI E
Sbjct: 468 AETAFHPCGTCKMG--YDEMAVVDGEGRVHGLEGLRVVDASIMPQIITGNLNATTIMIGE 525
Query: 850 KASDLIK 856
K +D+I+
Sbjct: 526 KIADMIR 532
Score = 58.5 bits (140), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 36/85 (42%), Positives = 51/85 (60%), Gaps = 8/85 (9%)
Query: 140 YDFIVIGGGSSGAVVANRLSEVPNWRVLLIEAGGDE---PTGTQIP-SMFLNFLGSSIDY 195
+D+I+IG GS+G V+A RL+E PN VLL+EAGG + TQ+P ++ G ++
Sbjct: 3 FDYIIIGAGSAGNVLATRLTEDPNTTVLLLEAGGPDYRFDFRTQMPAALAFPLQGKRYNW 62
Query: 196 GYKTEPEDMACLNNEERRCNWPRGK 220
Y+TEPE +NN C RGK
Sbjct: 63 AYETEPEPF--MNNRRMECG--RGK 83
Score = 48.9 bits (115), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/54 (46%), Positives = 34/54 (62%), Gaps = 2/54 (3%)
Query: 283 IRRNTGAENHQAGSCKMGPASDPSAVVSPELKVHGVDRLRVVDCSIMPAVTSGS 336
+R + H G+CKMG D AVV E +VHG++ LRVVD SIMP + +G+
Sbjct: 464 VRNHAETAFHPCGTCKMG--YDEMAVVDGEGRVHGLEGLRVVDASIMPQIITGN 515
>sp|A4JJG6|BETA_BURVG Choline dehydrogenase OS=Burkholderia vietnamiensis (strain G4 /
LMG 22486) GN=betA PE=3 SV=1
Length = 566
Score = 235 bits (599), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 163/485 (33%), Positives = 241/485 (49%), Gaps = 42/485 (8%)
Query: 383 VSCLLSPVLGGTSVLNGMMYIRGSRADYDNWA-KAGNPGWSYQDVLPYFLKSEDNQQATM 441
+ C LGG+S++NGM YIRG+ DYDNW+ G W+Y D LPYF K+E
Sbjct: 80 MECGRGKGLGGSSLINGMCYIRGNALDYDNWSTHQGLERWTYLDCLPYFRKAETRDVGP- 138
Query: 442 MDQGFHGVGGYLTVT-QFPYHPPLSHSILQGAMELGMP-VRDLNGVSHTGFM-IAQTTTR 498
+HG G ++VT P PL ++++ ++ G P DLNG GF + +T T
Sbjct: 139 --NDYHGGDGPVSVTTSKPGANPLFEAMVEAGVQAGYPRTDDLNGYQQEGFGPMDRTVTP 196
Query: 499 NGSRLSTSKAFLRPIISRNNLHILLNTTVTRVIVDPLTKAAIGVEFLTNGRLERLQAKNE 558
G R ST++ +L +R NL I+ + R++ D K A GV +L A+ E
Sbjct: 197 KGRRASTARGYLDQAKTRPNLEIVTHALADRILFD--GKRASGVAYLRGSERATAHARRE 254
Query: 559 VIVCAGAVDSPRILLLSGIGPREELRRLNIAPIHDLPGVGKNLHNHVAHFLNFFINDTDT 618
V+VC+GA+ SP++L SG+GP L+ L+I + DLPGVG+NL +H+ ++ + + +
Sbjct: 255 VLVCSGAIASPQLLQRSGVGPGAWLKELDIPIVLDLPGVGQNLQDHLEMYIQYECKEPVS 314
Query: 619 T--ALNWATAMEYLLFRDGLMSGTGLS-----EVTGFVHSRLSNPAEDNPDLQIFFSGYL 671
AL W + L + +++GTGL E GF+ +R +P P++Q F
Sbjct: 315 LYPALKWWNQPKIGL--EWMLNGTGLGASNHFEAGGFIRTRDDDPW---PNIQYHFLPVA 369
Query: 672 ANCARTGQVGERSDGMNNSTPVPQRTISIFPTVLHPKSRGYLTLKDNNPQTPPLIFARYL 731
N N S + + SRG + L+ +P P I Y+
Sbjct: 370 IN-------------YNGSNAIEMHGFQAHVGSMRSPSRGRVKLRSRDPNDHPSILFNYM 416
Query: 732 THPDDVKTLVDGIKIAIRLTQTAALQKYGFRIDTTPVKGCENLPFGCDAYWECAIRRNTG 791
D + D I+ + + AL +Y R + P C + D + +R
Sbjct: 417 AEALDWREFRDAIRATREIMRQPALDRYRGR-ELNPGADCRS-----DKELDTFVRARAE 470
Query: 792 AENHQAGSCKMGPASDPSAVVSPELKVHGVDRLRVVDCSIMPAVTSGNTNAPAIMIAEKA 851
H + SCKMG D AVV E +VHG+D LRVVD SIMP +T+GN NAP IMIAEK
Sbjct: 471 TAFHPSCSCKMG--YDDMAVVDDEGRVHGLDGLRVVDASIMPIITTGNLNAPTIMIAEKI 528
Query: 852 SDLIK 856
+D I+
Sbjct: 529 ADRIR 533
Score = 56.6 bits (135), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 36/87 (41%), Positives = 52/87 (59%), Gaps = 8/87 (9%)
Query: 138 RDYDFIVIGGGSSGAVVANRLSEVPNWRVLLIEAGGDE---PTGTQIPSMFLNFL-GSSI 193
R+YD+I+ G GS+G V+A RL+E PN VLL+EAGG + TQ+P+ L G
Sbjct: 4 REYDYIICGAGSAGNVLATRLTEDPNVTVLLLEAGGPDYRFDFRTQMPAALAYPLQGRRY 63
Query: 194 DYGYKTEPEDMACLNNEERRCNWPRGK 220
++ Y+T+PE + + RR RGK
Sbjct: 64 NWAYETDPEP----HMDNRRMECGRGK 86
Score = 49.7 bits (117), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/45 (57%), Positives = 32/45 (71%), Gaps = 2/45 (4%)
Query: 292 HQAGSCKMGPASDPSAVVSPELKVHGVDRLRVVDCSIMPAVTSGS 336
H + SCKMG D AVV E +VHG+D LRVVD SIMP +T+G+
Sbjct: 474 HPSCSCKMG--YDDMAVVDDEGRVHGLDGLRVVDASIMPIITTGN 516
Score = 33.5 bits (75), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 13/23 (56%), Positives = 19/23 (82%)
Query: 60 RDYDFIVIGGGSSGAVVANRLSE 82
R+YD+I+ G GS+G V+A RL+E
Sbjct: 4 REYDYIICGAGSAGNVLATRLTE 26
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.320 0.136 0.428
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 349,130,204
Number of Sequences: 539616
Number of extensions: 15830929
Number of successful extensions: 34397
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 151
Number of HSP's successfully gapped in prelim test: 29
Number of HSP's that attempted gapping in prelim test: 33074
Number of HSP's gapped (non-prelim): 719
length of query: 868
length of database: 191,569,459
effective HSP length: 126
effective length of query: 742
effective length of database: 123,577,843
effective search space: 91694759506
effective search space used: 91694759506
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 66 (30.0 bits)