Query psy1205
Match_columns 868
No_of_seqs 491 out of 2391
Neff 8.3
Searched_HMMs 46136
Date Fri Aug 16 17:20:16 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy1205.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/1205hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1238|consensus 100.0 5E-113 1E-117 954.6 45.4 471 390-862 139-619 (623)
2 PRK02106 choline dehydrogenase 100.0 5.2E-80 1.1E-84 727.5 48.9 446 385-860 82-536 (560)
3 TIGR01810 betA choline dehydro 100.0 6.7E-80 1.4E-84 722.8 49.5 446 385-858 76-529 (532)
4 PLN02785 Protein HOTHEAD 100.0 7.7E-74 1.7E-78 668.4 46.2 431 386-861 126-582 (587)
5 COG2303 BetA Choline dehydroge 100.0 1.5E-72 3.2E-77 654.4 36.5 517 138-858 6-536 (542)
6 TIGR02462 pyranose_ox pyranose 100.0 1E-48 2.2E-53 447.8 37.1 396 390-859 116-543 (544)
7 PF00732 GMC_oxred_N: GMC oxid 100.0 4.2E-47 9.1E-52 414.0 13.3 216 386-605 75-295 (296)
8 KOG1238|consensus 100.0 8.3E-33 1.8E-37 310.4 10.5 125 222-349 463-610 (623)
9 PF05199 GMC_oxred_C: GMC oxid 100.0 4.8E-32 1E-36 262.6 12.7 143 707-851 1-144 (144)
10 TIGR01810 betA choline dehydro 100.0 5.3E-32 1.1E-36 317.9 10.8 127 222-350 383-525 (532)
11 PRK02106 choline dehydrogenase 100.0 4.3E-31 9.4E-36 311.8 9.0 126 222-351 390-531 (560)
12 COG2303 BetA Choline dehydroge 99.9 1.4E-27 3.1E-32 278.0 10.1 125 222-350 391-532 (542)
13 PLN02785 Protein HOTHEAD 99.8 1.7E-20 3.8E-25 220.0 8.6 121 222-350 423-575 (587)
14 PF05199 GMC_oxred_C: GMC oxid 99.8 1.3E-19 2.9E-24 175.3 3.2 121 224-347 2-144 (144)
15 PF00732 GMC_oxred_N: GMC oxid 99.1 1.9E-11 4.1E-16 133.3 2.7 61 62-122 1-126 (296)
16 TIGR02462 pyranose_ox pyranose 98.8 4.6E-09 9.9E-14 121.7 4.0 61 289-350 477-538 (544)
17 PRK12845 3-ketosteroid-delta-1 98.7 1.7E-07 3.7E-12 110.7 13.1 57 512-570 225-281 (564)
18 PRK12835 3-ketosteroid-delta-1 98.6 1.5E-07 3.3E-12 111.8 11.2 63 510-573 219-282 (584)
19 PRK12837 3-ketosteroid-delta-1 98.6 2E-07 4.4E-12 109.4 10.3 64 508-573 178-242 (513)
20 PRK12844 3-ketosteroid-delta-1 98.5 2E-07 4.4E-12 110.2 9.9 62 509-572 213-274 (557)
21 PRK07121 hypothetical protein; 98.5 7.2E-07 1.6E-11 104.4 13.1 64 509-573 182-245 (492)
22 PF00890 FAD_binding_2: FAD bi 98.5 4E-07 8.7E-12 104.4 9.7 190 332-573 3-208 (417)
23 PRK07843 3-ketosteroid-delta-1 98.3 2.4E-06 5.2E-11 101.2 11.9 63 510-574 214-276 (557)
24 PRK08274 tricarballylate dehyd 98.3 4.2E-06 9.2E-11 97.4 11.5 67 510-579 137-204 (466)
25 PLN02815 L-aspartate oxidase 98.2 2.8E-06 6.1E-11 100.7 9.3 188 322-568 21-223 (594)
26 PRK06452 sdhA succinate dehydr 98.2 7.4E-06 1.6E-10 97.2 12.8 55 510-567 142-198 (566)
27 TIGR01813 flavo_cyto_c flavocy 98.2 5.8E-06 1.3E-10 95.5 11.6 60 508-569 134-194 (439)
28 PRK08958 sdhA succinate dehydr 98.2 5.5E-06 1.2E-10 98.6 11.0 57 510-568 149-207 (588)
29 PRK07573 sdhA succinate dehydr 98.2 5.8E-06 1.2E-10 99.3 11.2 53 513-568 179-233 (640)
30 TIGR01811 sdhA_Bsu succinate d 98.2 7.7E-06 1.7E-10 97.6 12.1 51 516-568 145-197 (603)
31 PRK07395 L-aspartate oxidase; 98.2 4.7E-06 1E-10 98.4 10.1 54 514-568 145-198 (553)
32 PLN00128 Succinate dehydrogena 98.2 9.5E-06 2.1E-10 97.1 11.8 53 514-568 197-251 (635)
33 PRK06175 L-aspartate oxidase; 98.1 1.4E-05 3.1E-10 91.8 12.4 57 509-568 134-190 (433)
34 PRK06481 fumarate reductase fl 98.1 1.3E-05 2.7E-10 94.1 12.2 190 331-573 64-257 (506)
35 PTZ00306 NADH-dependent fumara 98.1 6.4E-06 1.4E-10 105.3 9.2 53 517-570 560-623 (1167)
36 PRK08641 sdhA succinate dehydr 98.1 2.3E-05 5E-10 93.4 12.8 50 517-568 150-201 (589)
37 PRK06263 sdhA succinate dehydr 98.1 1.1E-05 2.3E-10 95.6 9.6 57 510-568 140-198 (543)
38 PRK12839 hypothetical protein; 98.1 1.6E-05 3.5E-10 94.3 10.9 59 512-571 222-280 (572)
39 PTZ00139 Succinate dehydrogena 98.1 9.4E-06 2E-10 97.1 8.7 58 509-568 171-230 (617)
40 TIGR01176 fum_red_Fp fumarate 98.0 1.2E-05 2.6E-10 95.6 9.2 52 514-568 143-196 (580)
41 PRK06134 putative FAD-binding 98.0 1.9E-05 4.1E-10 94.1 10.8 62 510-573 223-284 (581)
42 PRK12843 putative FAD-binding 98.0 3E-05 6.5E-10 92.4 12.5 62 510-573 227-288 (578)
43 TIGR01812 sdhA_frdA_Gneg succi 98.0 2.6E-05 5.7E-10 92.9 11.7 56 510-568 135-192 (566)
44 PRK12834 putative FAD-binding 98.0 2.1E-05 4.6E-10 93.2 10.7 55 516-573 164-234 (549)
45 PRK09231 fumarate reductase fl 98.0 2E-05 4.3E-10 93.9 10.0 52 514-568 144-197 (582)
46 PRK12842 putative succinate de 98.0 2.9E-05 6.3E-10 92.6 11.2 62 510-573 220-281 (574)
47 PRK09078 sdhA succinate dehydr 98.0 3.7E-05 8.1E-10 91.8 12.1 57 510-568 155-213 (598)
48 PRK05945 sdhA succinate dehydr 98.0 5.6E-05 1.2E-09 90.1 13.6 56 510-568 141-198 (575)
49 PRK08626 fumarate reductase fl 97.9 4.8E-05 1E-09 91.6 12.2 56 510-568 164-221 (657)
50 PRK07804 L-aspartate oxidase; 97.9 2.7E-05 5.9E-10 92.0 9.8 58 509-568 149-211 (541)
51 PRK07057 sdhA succinate dehydr 97.9 4.1E-05 8.9E-10 91.4 10.9 57 510-568 154-212 (591)
52 PRK07512 L-aspartate oxidase; 97.9 4.3E-05 9.2E-10 89.8 10.8 53 513-568 146-198 (513)
53 TIGR00551 nadB L-aspartate oxi 97.9 5.5E-05 1.2E-09 88.4 11.3 50 516-568 141-190 (488)
54 PRK09077 L-aspartate oxidase; 97.9 7.9E-05 1.7E-09 88.1 12.0 55 513-568 148-208 (536)
55 PRK06069 sdhA succinate dehydr 97.9 5.5E-05 1.2E-09 90.3 10.7 53 513-568 147-201 (577)
56 PRK07803 sdhA succinate dehydr 97.8 3.1E-05 6.8E-10 92.9 8.0 49 518-569 165-215 (626)
57 PRK08071 L-aspartate oxidase; 97.8 0.0001 2.3E-09 86.4 11.8 49 517-568 142-191 (510)
58 TIGR02485 CobZ_N-term precorri 97.8 0.00012 2.7E-09 84.3 11.6 62 510-574 129-190 (432)
59 PRK08205 sdhA succinate dehydr 97.8 0.00018 4E-09 85.8 12.9 59 509-568 145-207 (583)
60 PRK08275 putative oxidoreducta 97.7 0.00026 5.6E-09 84.1 12.7 59 508-568 141-201 (554)
61 PRK11101 glpA sn-glycerol-3-ph 97.7 0.00024 5.1E-09 84.2 11.9 196 329-576 7-219 (546)
62 PRK06854 adenylylsulfate reduc 97.6 0.0004 8.7E-09 83.2 12.3 50 515-567 144-195 (608)
63 PF01266 DAO: FAD dependent ox 97.6 6E-05 1.3E-09 84.0 4.9 193 332-576 3-211 (358)
64 TIGR02061 aprA adenosine phosp 97.5 0.00058 1.3E-08 81.3 12.2 51 516-567 138-191 (614)
65 PRK05675 sdhA succinate dehydr 97.5 0.00033 7.1E-09 83.4 10.1 58 509-568 131-190 (570)
66 COG0029 NadB Aspartate oxidase 97.5 0.00013 2.9E-09 81.3 5.9 98 467-567 91-196 (518)
67 PRK08401 L-aspartate oxidase; 97.4 0.00084 1.8E-08 78.0 11.7 52 509-568 125-176 (466)
68 PRK13800 putative oxidoreducta 97.3 0.002 4.4E-08 80.8 14.3 49 517-568 156-206 (897)
69 COG1053 SdhA Succinate dehydro 97.3 0.00073 1.6E-08 79.4 8.9 130 469-607 98-241 (562)
70 PRK13977 myosin-cross-reactive 97.2 0.00069 1.5E-08 78.7 7.8 55 514-568 236-294 (576)
71 TIGR01816 sdhA_forward succina 97.2 0.001 2.2E-08 79.1 8.8 58 508-568 123-182 (565)
72 PTZ00058 glutathione reductase 97.1 0.00034 7.3E-09 82.6 4.4 45 58-104 45-90 (561)
73 KOG2404|consensus 97.1 0.00025 5.5E-09 74.2 2.7 48 518-568 159-207 (477)
74 COG0644 FixC Dehydrogenases (f 97.1 0.00026 5.5E-09 80.6 2.7 38 60-98 2-39 (396)
75 PRK10157 putative oxidoreducta 97.1 0.00034 7.3E-09 80.4 3.7 38 60-98 4-41 (428)
76 PF01946 Thi4: Thi4 family; PD 97.1 0.00021 4.5E-09 71.9 1.2 38 60-98 16-53 (230)
77 KOG1298|consensus 97.0 0.00077 1.7E-08 72.5 5.1 52 513-568 157-209 (509)
78 PRK12409 D-amino acid dehydrog 97.0 0.0032 7E-08 72.0 10.4 57 512-573 205-263 (410)
79 PRK10015 oxidoreductase; Provi 97.0 0.00039 8.5E-09 79.9 2.8 36 60-96 4-39 (429)
80 COG0579 Predicted dehydrogenas 97.0 0.0068 1.5E-07 68.3 12.5 200 330-579 5-222 (429)
81 PF03486 HI0933_like: HI0933-l 96.8 0.00055 1.2E-08 77.5 2.1 52 513-570 118-169 (409)
82 COG2081 Predicted flavoprotein 96.8 0.00097 2.1E-08 72.9 3.6 38 60-98 2-39 (408)
83 TIGR00292 thiazole biosynthesi 96.8 0.00072 1.6E-08 71.7 2.6 38 60-98 20-57 (254)
84 PLN00093 geranylgeranyl diphos 96.7 0.00087 1.9E-08 77.3 3.1 38 57-95 35-72 (450)
85 PTZ00363 rab-GDP dissociation 96.7 0.00098 2.1E-08 76.3 3.2 38 60-98 3-40 (443)
86 TIGR01423 trypano_reduc trypan 96.6 0.001 2.2E-08 77.6 2.7 46 60-105 2-56 (486)
87 TIGR01421 gluta_reduc_1 glutat 96.6 0.0011 2.3E-08 76.8 2.6 44 60-105 1-45 (450)
88 COG1249 Lpd Pyruvate/2-oxoglut 96.6 0.001 2.3E-08 75.9 2.3 45 60-105 3-48 (454)
89 PRK06115 dihydrolipoamide dehy 96.6 0.0011 2.3E-08 77.3 2.4 43 61-104 3-46 (466)
90 PF13450 NAD_binding_8: NAD(P) 96.6 0.001 2.2E-08 55.0 1.6 32 66-98 1-32 (68)
91 PRK08010 pyridine nucleotide-d 96.6 0.0012 2.6E-08 76.3 2.7 43 61-104 3-47 (441)
92 PRK11728 hydroxyglutarate oxid 96.5 0.0013 2.9E-08 74.7 2.6 38 61-98 2-40 (393)
93 PRK06467 dihydrolipoamide dehy 96.5 0.0015 3.2E-08 76.1 2.8 45 61-106 4-49 (471)
94 PRK04176 ribulose-1,5-biphosph 96.5 0.0015 3.3E-08 69.4 2.6 37 60-97 24-60 (257)
95 TIGR01424 gluta_reduc_2 glutat 96.5 0.0014 3.1E-08 75.8 2.4 43 61-105 2-45 (446)
96 COG0562 Glf UDP-galactopyranos 96.4 0.0017 3.7E-08 68.6 2.5 36 62-98 2-37 (374)
97 PRK04176 ribulose-1,5-biphosph 96.4 0.0057 1.2E-07 65.1 6.5 52 514-567 114-173 (257)
98 PLN02661 Putative thiazole syn 96.4 0.0016 3.5E-08 71.3 2.3 38 60-97 91-128 (357)
99 PRK06416 dihydrolipoamide dehy 96.4 0.0017 3.7E-08 75.5 2.7 43 60-104 3-46 (462)
100 PRK05257 malate:quinone oxidor 96.4 0.0016 3.5E-08 75.9 2.4 39 60-98 4-43 (494)
101 PRK05249 soluble pyridine nucl 96.4 0.0017 3.6E-08 75.6 2.5 44 60-104 4-48 (461)
102 PLN02661 Putative thiazole syn 96.4 0.0067 1.4E-07 66.6 6.9 56 509-567 178-244 (357)
103 TIGR02032 GG-red-SF geranylger 96.4 0.0018 3.9E-08 70.1 2.3 34 62-96 1-34 (295)
104 TIGR02023 BchP-ChlP geranylger 96.3 0.0017 3.6E-08 73.8 2.0 32 62-94 1-32 (388)
105 TIGR01320 mal_quin_oxido malat 96.3 0.0017 3.8E-08 75.5 2.3 37 62-98 1-38 (483)
106 PRK05976 dihydrolipoamide dehy 96.3 0.0019 4.1E-08 75.4 2.5 43 60-104 3-46 (472)
107 PRK13339 malate:quinone oxidor 96.3 0.0019 4.1E-08 74.9 2.4 40 59-98 4-44 (497)
108 PF12831 FAD_oxidored: FAD dep 96.3 0.0019 4.2E-08 74.2 2.5 59 513-577 99-157 (428)
109 TIGR01350 lipoamide_DH dihydro 96.3 0.0017 3.8E-08 75.4 2.1 42 61-104 1-43 (461)
110 PRK00711 D-amino acid dehydrog 96.3 0.018 3.8E-07 66.0 10.3 54 512-573 209-262 (416)
111 PRK06116 glutathione reductase 96.3 0.0019 4E-08 74.9 2.3 43 61-105 4-47 (450)
112 PRK13748 putative mercuric red 96.3 0.002 4.4E-08 76.9 2.6 44 60-105 97-141 (561)
113 PLN02464 glycerol-3-phosphate 96.3 0.0081 1.8E-07 72.3 7.7 61 514-576 242-304 (627)
114 PLN02507 glutathione reductase 96.3 0.0022 4.8E-08 75.1 2.8 50 57-107 21-80 (499)
115 PRK07251 pyridine nucleotide-d 96.3 0.0021 4.6E-08 74.2 2.6 43 61-104 3-47 (438)
116 PTZ00153 lipoamide dehydrogena 96.3 0.0021 4.6E-08 77.0 2.7 46 59-105 114-161 (659)
117 PRK14694 putative mercuric red 96.2 0.0026 5.5E-08 74.2 2.8 44 59-104 4-48 (468)
118 PRK12409 D-amino acid dehydrog 96.2 0.0024 5.1E-08 73.1 2.4 36 62-98 2-37 (410)
119 COG1635 THI4 Ribulose 1,5-bisp 96.2 0.0026 5.6E-08 63.7 2.2 38 60-98 29-66 (262)
120 PRK05192 tRNA uridine 5-carbox 96.2 0.0024 5.2E-08 74.9 2.3 38 60-98 3-41 (618)
121 TIGR01377 soxA_mon sarcosine o 96.2 0.028 6.1E-07 63.4 10.9 55 510-573 151-205 (380)
122 PRK12845 3-ketosteroid-delta-1 96.1 0.0047 1E-07 73.3 4.5 61 792-857 498-563 (564)
123 COG0579 Predicted dehydrogenas 96.1 0.003 6.5E-08 71.2 2.6 39 60-98 2-41 (429)
124 TIGR00292 thiazole biosynthesi 96.1 0.01 2.2E-07 63.0 6.5 57 509-566 105-169 (254)
125 PRK11728 hydroxyglutarate oxid 96.1 0.03 6.6E-07 63.6 10.9 57 512-577 157-213 (393)
126 PF01494 FAD_binding_3: FAD bi 96.1 0.0025 5.3E-08 70.9 1.8 35 61-96 1-35 (356)
127 PTZ00383 malate:quinone oxidor 96.1 0.0036 7.7E-08 72.8 3.1 41 58-98 42-83 (497)
128 PRK06370 mercuric reductase; V 96.1 0.0031 6.7E-08 73.4 2.6 44 60-104 4-47 (463)
129 PLN02546 glutathione reductase 96.1 0.0031 6.6E-08 74.6 2.5 46 60-106 78-133 (558)
130 TIGR01373 soxB sarcosine oxida 96.1 0.011 2.4E-07 67.5 7.0 58 512-576 191-248 (407)
131 TIGR03329 Phn_aa_oxid putative 96.0 0.0063 1.4E-07 70.7 4.9 47 512-567 191-237 (460)
132 PRK08020 ubiF 2-octaprenyl-3-m 96.0 0.0035 7.6E-08 71.2 2.7 35 60-95 4-38 (391)
133 TIGR00031 UDP-GALP_mutase UDP- 96.0 0.0035 7.6E-08 70.2 2.6 36 62-98 2-37 (377)
134 PRK13369 glycerol-3-phosphate 96.0 0.0037 8.1E-08 73.4 2.9 54 515-573 166-220 (502)
135 TIGR02053 MerA mercuric reduct 96.0 0.0033 7.2E-08 73.1 2.5 41 62-103 1-41 (463)
136 TIGR03377 glycerol3P_GlpA glyc 96.0 0.021 4.5E-07 67.5 9.2 60 514-577 138-199 (516)
137 PRK11101 glpA sn-glycerol-3-ph 96.0 0.0037 8E-08 74.1 2.9 35 60-95 5-39 (546)
138 TIGR01789 lycopene_cycl lycope 96.0 0.0035 7.6E-08 70.5 2.5 34 63-96 1-35 (370)
139 PRK07608 ubiquinone biosynthes 96.0 0.0036 7.8E-08 71.0 2.6 36 60-96 4-39 (388)
140 PF05834 Lycopene_cycl: Lycope 96.0 0.0037 8.1E-08 70.5 2.5 34 63-96 1-35 (374)
141 PF12831 FAD_oxidored: FAD dep 96.0 0.0018 4E-08 74.4 -0.1 30 332-365 3-32 (428)
142 PF03486 HI0933_like: HI0933-l 96.0 0.0014 3.1E-08 74.2 -1.0 36 331-370 3-38 (409)
143 PRK09126 hypothetical protein; 95.9 0.0039 8.5E-08 70.8 2.5 35 61-96 3-37 (392)
144 PLN02463 lycopene beta cyclase 95.9 0.0046 1E-07 71.1 3.0 37 59-96 26-62 (447)
145 TIGR02028 ChlP geranylgeranyl 95.9 0.0036 7.9E-08 71.2 2.1 33 62-95 1-33 (398)
146 PRK06327 dihydrolipoamide dehy 95.9 0.0046 9.9E-08 72.2 2.9 45 60-105 3-54 (475)
147 TIGR03364 HpnW_proposed FAD de 95.9 0.023 4.9E-07 63.9 8.4 31 331-365 3-33 (365)
148 PRK06481 fumarate reductase fl 95.9 0.012 2.6E-07 69.2 6.3 38 60-98 60-97 (506)
149 COG0578 GlpA Glycerol-3-phosph 95.9 0.026 5.7E-07 65.1 8.7 76 496-579 159-236 (532)
150 PRK11259 solA N-methyltryptoph 95.9 0.0042 9.2E-08 70.0 2.3 35 61-96 3-37 (376)
151 PRK07121 hypothetical protein; 95.9 0.0056 1.2E-07 71.8 3.4 39 59-98 18-56 (492)
152 PRK07364 2-octaprenyl-6-methox 95.9 0.0058 1.3E-07 70.0 3.4 36 60-96 17-52 (415)
153 TIGR03329 Phn_aa_oxid putative 95.8 0.0055 1.2E-07 71.2 3.2 38 58-95 21-59 (460)
154 PF01266 DAO: FAD dependent ox 95.8 0.0038 8.2E-08 69.4 1.8 34 63-98 1-34 (358)
155 PRK12266 glpD glycerol-3-phosp 95.8 0.0045 9.8E-08 72.7 2.4 54 515-573 166-221 (508)
156 PRK11445 putative oxidoreducta 95.8 0.0043 9.2E-08 69.4 2.1 33 62-96 2-34 (351)
157 PRK12835 3-ketosteroid-delta-1 95.8 0.0069 1.5E-07 72.3 3.9 40 58-98 8-47 (584)
158 PRK07333 2-octaprenyl-6-methox 95.8 0.0051 1.1E-07 70.1 2.6 36 61-96 1-37 (403)
159 TIGR01373 soxB sarcosine oxida 95.8 0.0053 1.2E-07 70.1 2.8 39 57-95 26-65 (407)
160 PRK12837 3-ketosteroid-delta-1 95.8 0.0053 1.1E-07 72.3 2.8 61 792-857 445-510 (513)
161 TIGR01320 mal_quin_oxido malat 95.8 0.026 5.6E-07 65.8 8.3 61 514-578 188-250 (483)
162 PLN02985 squalene monooxygenas 95.7 0.0057 1.2E-07 71.8 2.8 37 58-95 40-76 (514)
163 PRK07494 2-octaprenyl-6-methox 95.7 0.0058 1.3E-07 69.3 2.7 36 60-96 6-41 (388)
164 PRK07045 putative monooxygenas 95.7 0.0056 1.2E-07 69.5 2.6 36 60-96 4-39 (388)
165 PRK07818 dihydrolipoamide dehy 95.7 0.0057 1.2E-07 71.2 2.7 43 61-104 4-46 (466)
166 PRK06292 dihydrolipoamide dehy 95.7 0.0057 1.2E-07 71.1 2.6 40 61-102 3-43 (460)
167 PRK14727 putative mercuric red 95.7 0.0066 1.4E-07 70.9 3.0 44 60-104 15-59 (479)
168 KOG3855|consensus 95.7 0.0069 1.5E-07 66.1 2.9 41 60-100 35-80 (481)
169 PRK08773 2-octaprenyl-3-methyl 95.7 0.006 1.3E-07 69.3 2.6 36 60-96 5-40 (392)
170 COG1233 Phytoene dehydrogenase 95.7 0.0062 1.3E-07 71.2 2.8 38 60-98 2-39 (487)
171 PLN02464 glycerol-3-phosphate 95.7 0.0058 1.3E-07 73.5 2.6 36 59-95 69-104 (627)
172 PRK01747 mnmC bifunctional tRN 95.7 0.0053 1.1E-07 74.7 2.2 43 61-104 260-305 (662)
173 PLN02697 lycopene epsilon cycl 95.7 0.0062 1.3E-07 71.3 2.7 36 59-95 106-141 (529)
174 TIGR01377 soxA_mon sarcosine o 95.7 0.0055 1.2E-07 69.2 2.2 34 62-96 1-34 (380)
175 KOG0405|consensus 95.6 0.01 2.2E-07 63.3 3.8 46 58-104 17-63 (478)
176 PTZ00052 thioredoxin reductase 95.6 0.0063 1.4E-07 71.4 2.4 45 61-106 5-58 (499)
177 PRK08274 tricarballylate dehyd 95.6 0.0062 1.3E-07 71.0 2.3 36 60-96 3-38 (466)
178 PRK08013 oxidoreductase; Provi 95.6 0.0068 1.5E-07 69.1 2.6 35 61-96 3-37 (400)
179 TIGR01790 carotene-cycl lycope 95.5 0.0074 1.6E-07 68.4 2.7 33 63-96 1-33 (388)
180 PRK00711 D-amino acid dehydrog 95.5 0.0061 1.3E-07 69.8 1.8 41 63-104 2-45 (416)
181 PRK12842 putative succinate de 95.5 0.01 2.3E-07 70.9 3.8 67 792-864 500-572 (574)
182 PRK05714 2-octaprenyl-3-methyl 95.5 0.0081 1.8E-07 68.6 2.7 34 61-95 2-35 (405)
183 TIGR03364 HpnW_proposed FAD de 95.5 0.007 1.5E-07 68.0 2.2 34 62-96 1-34 (365)
184 PRK12844 3-ketosteroid-delta-1 95.4 0.0081 1.8E-07 71.4 2.7 39 59-98 4-42 (557)
185 TIGR01989 COQ6 Ubiquinone bios 95.4 0.0079 1.7E-07 69.4 2.3 34 62-95 1-37 (437)
186 TIGR02730 carot_isom carotene 95.4 0.0084 1.8E-07 70.4 2.5 58 510-573 235-292 (493)
187 PF00890 FAD_binding_2: FAD bi 95.4 0.0068 1.5E-07 69.5 1.7 35 63-98 1-35 (417)
188 PTZ00367 squalene epoxidase; P 95.3 0.016 3.5E-07 68.6 4.7 35 60-95 32-66 (567)
189 PRK06996 hypothetical protein; 95.3 0.011 2.3E-07 67.5 3.0 36 60-95 10-48 (398)
190 COG2081 Predicted flavoprotein 95.2 0.015 3.4E-07 63.7 3.7 88 466-570 82-170 (408)
191 KOG0042|consensus 95.2 0.014 3E-07 65.8 3.4 85 484-573 207-293 (680)
192 TIGR01988 Ubi-OHases Ubiquinon 95.2 0.01 2.2E-07 67.1 2.4 33 63-96 1-33 (385)
193 PTZ00383 malate:quinone oxidor 95.2 0.066 1.4E-06 62.4 9.1 53 518-578 231-283 (497)
194 TIGR03452 mycothione_red mycot 95.2 0.011 2.3E-07 68.6 2.6 40 61-104 2-42 (452)
195 KOG2665|consensus 95.2 0.012 2.7E-07 61.8 2.7 39 60-98 47-86 (453)
196 PRK08849 2-octaprenyl-3-methyl 95.2 0.01 2.3E-07 67.2 2.4 34 61-95 3-36 (384)
197 PRK06185 hypothetical protein; 95.2 0.011 2.3E-07 67.6 2.3 59 515-578 120-178 (407)
198 PRK13369 glycerol-3-phosphate 95.2 0.12 2.6E-06 60.9 11.1 33 329-365 7-39 (502)
199 PRK07846 mycothione reductase; 95.1 0.012 2.6E-07 68.2 2.6 41 61-105 1-42 (451)
200 TIGR00275 flavoprotein, HI0933 95.1 0.012 2.6E-07 67.0 2.7 55 508-570 109-163 (400)
201 PRK06617 2-octaprenyl-6-methox 95.1 0.012 2.6E-07 66.4 2.6 33 62-95 2-34 (374)
202 TIGR01984 UbiH 2-polyprenyl-6- 95.1 0.012 2.6E-07 66.5 2.4 34 63-96 1-34 (382)
203 TIGR01292 TRX_reduct thioredox 95.0 0.012 2.6E-07 63.9 2.2 57 515-575 188-246 (300)
204 PF01946 Thi4: Thi4 family; PD 95.0 0.08 1.7E-06 53.7 7.8 52 510-564 103-162 (230)
205 PRK05732 2-octaprenyl-6-methox 95.0 0.013 2.8E-07 66.6 2.4 34 61-94 3-38 (395)
206 PRK08244 hypothetical protein; 94.9 0.014 3E-07 68.5 2.4 35 61-96 2-36 (493)
207 TIGR01438 TGR thioredoxin and 94.9 0.015 3.2E-07 68.0 2.5 44 61-105 2-54 (484)
208 PRK08850 2-octaprenyl-6-methox 94.9 0.014 3.1E-07 66.5 2.3 33 61-94 4-36 (405)
209 TIGR01813 flavo_cyto_c flavocy 94.8 0.015 3.3E-07 67.1 2.5 35 63-98 1-36 (439)
210 PRK07190 hypothetical protein; 94.8 0.017 3.7E-07 67.4 2.9 36 60-96 4-39 (487)
211 PRK11259 solA N-methyltryptoph 94.8 0.14 3E-06 57.7 10.1 32 330-365 5-36 (376)
212 PRK06834 hypothetical protein; 94.8 0.017 3.6E-07 67.6 2.6 35 61-96 3-37 (488)
213 COG3380 Predicted NAD/FAD-depe 94.7 0.081 1.8E-06 55.0 7.0 65 502-577 106-170 (331)
214 PF01134 GIDA: Glucose inhibit 94.7 0.013 2.9E-07 65.3 1.4 50 515-571 107-156 (392)
215 PRK08243 4-hydroxybenzoate 3-m 94.7 0.017 3.7E-07 65.6 2.4 35 61-96 2-36 (392)
216 PRK08275 putative oxidoreducta 94.7 0.016 3.5E-07 69.0 2.2 38 60-97 8-46 (554)
217 PRK05257 malate:quinone oxidor 94.7 0.13 2.9E-06 60.1 9.6 66 509-578 189-256 (494)
218 PRK06854 adenylylsulfate reduc 94.7 0.016 3.5E-07 69.6 2.1 39 60-98 10-49 (608)
219 PRK06184 hypothetical protein; 94.6 0.019 4.1E-07 67.5 2.7 36 61-97 3-38 (502)
220 COG0654 UbiH 2-polyprenyl-6-me 94.6 0.018 4E-07 65.2 2.4 33 61-94 2-34 (387)
221 PLN02576 protoporphyrinogen ox 94.6 0.022 4.8E-07 66.9 3.0 39 60-98 11-49 (496)
222 PRK07843 3-ketosteroid-delta-1 94.5 0.021 4.6E-07 67.9 2.7 38 60-98 6-43 (557)
223 PRK07395 L-aspartate oxidase; 94.5 0.021 4.6E-07 67.7 2.8 40 57-98 5-44 (553)
224 PRK06183 mhpA 3-(3-hydroxyphen 94.5 0.025 5.4E-07 67.1 3.4 38 59-97 8-45 (538)
225 TIGR02360 pbenz_hydroxyl 4-hyd 94.5 0.018 4E-07 65.3 2.1 34 61-95 2-35 (390)
226 KOG2415|consensus 94.5 0.021 4.6E-07 62.2 2.3 39 60-98 75-118 (621)
227 PRK05945 sdhA succinate dehydr 94.5 0.019 4.1E-07 68.7 2.1 38 61-98 3-41 (575)
228 PRK12834 putative FAD-binding 94.4 0.022 4.7E-07 67.8 2.5 38 60-98 3-42 (549)
229 TIGR00562 proto_IX_ox protopor 94.4 0.023 4.9E-07 66.1 2.6 37 62-98 3-42 (462)
230 PF13738 Pyr_redox_3: Pyridine 94.4 0.019 4E-07 58.6 1.6 61 509-576 87-147 (203)
231 PRK07588 hypothetical protein; 94.4 0.022 4.8E-07 64.6 2.4 33 63-96 2-34 (391)
232 PRK06175 L-aspartate oxidase; 94.4 0.021 4.5E-07 65.8 2.1 37 60-98 3-39 (433)
233 TIGR03143 AhpF_homolog putativ 94.4 0.022 4.7E-07 67.8 2.3 36 61-98 4-39 (555)
234 COG3573 Predicted oxidoreducta 94.3 0.068 1.5E-06 56.7 5.5 66 507-575 156-236 (552)
235 PRK11883 protoporphyrinogen ox 94.3 0.025 5.4E-07 65.5 2.6 36 63-98 2-38 (451)
236 PRK07804 L-aspartate oxidase; 94.3 0.022 4.8E-07 67.5 2.2 39 59-98 14-52 (541)
237 PRK06753 hypothetical protein; 94.3 0.024 5.3E-07 63.8 2.4 33 63-96 2-34 (373)
238 PRK06847 hypothetical protein; 94.3 0.027 5.8E-07 63.5 2.8 35 61-96 4-38 (375)
239 TIGR02733 desat_CrtD C-3',4' d 94.3 0.026 5.6E-07 66.3 2.7 60 510-572 238-299 (492)
240 TIGR02352 thiamin_ThiO glycine 94.3 0.15 3.2E-06 56.4 8.6 48 512-566 145-192 (337)
241 PRK12843 putative FAD-binding 94.3 0.043 9.3E-07 65.6 4.5 39 59-98 14-52 (578)
242 COG2072 TrkA Predicted flavopr 94.2 0.095 2.1E-06 60.4 7.0 40 59-98 6-45 (443)
243 COG1231 Monoamine oxidase [Ami 94.1 0.034 7.4E-07 62.1 3.1 48 59-107 5-56 (450)
244 PRK05329 anaerobic glycerol-3- 94.1 0.025 5.4E-07 64.4 2.1 60 509-572 264-323 (422)
245 PRK07236 hypothetical protein; 94.1 0.031 6.8E-07 63.3 2.7 36 60-96 5-40 (386)
246 KOG0029|consensus 94.0 0.032 6.9E-07 64.9 2.6 39 59-98 13-51 (501)
247 PRK07208 hypothetical protein; 94.0 0.032 6.9E-07 65.2 2.7 37 61-98 4-40 (479)
248 PRK12839 hypothetical protein; 94.0 0.044 9.6E-07 65.3 3.9 64 792-860 501-569 (572)
249 PRK09077 L-aspartate oxidase; 94.0 0.034 7.3E-07 65.9 2.8 38 59-98 6-43 (536)
250 PLN02268 probable polyamine ox 93.9 0.032 6.9E-07 64.4 2.5 35 63-98 2-36 (435)
251 PTZ00139 Succinate dehydrogena 93.9 0.029 6.3E-07 67.5 2.2 38 60-98 28-65 (617)
252 PRK06134 putative FAD-binding 93.8 0.053 1.1E-06 64.9 4.2 40 58-98 9-48 (581)
253 PRK12266 glpD glycerol-3-phosp 93.8 0.53 1.1E-05 55.4 12.4 33 329-365 7-39 (508)
254 PRK08958 sdhA succinate dehydr 93.8 0.036 7.7E-07 66.3 2.6 38 60-98 6-43 (588)
255 PRK08205 sdhA succinate dehydr 93.8 0.032 7E-07 66.8 2.2 37 60-98 4-40 (583)
256 PRK08163 salicylate hydroxylas 93.8 0.036 7.9E-07 63.0 2.5 35 61-96 4-38 (396)
257 PRK06126 hypothetical protein; 93.8 0.038 8.3E-07 65.7 2.8 36 60-96 6-41 (545)
258 PRK09231 fumarate reductase fl 93.7 0.036 7.9E-07 66.2 2.6 38 61-98 4-42 (582)
259 PRK07538 hypothetical protein; 93.7 0.035 7.5E-07 63.6 2.3 33 63-96 2-34 (413)
260 PRK06452 sdhA succinate dehydr 93.7 0.036 7.7E-07 66.1 2.5 38 60-98 4-41 (566)
261 PRK08401 L-aspartate oxidase; 93.7 0.036 7.8E-07 64.5 2.3 34 62-96 2-35 (466)
262 COG0665 DadA Glycine/D-amino a 93.7 0.042 9.1E-07 62.1 2.8 36 60-96 3-38 (387)
263 PRK08294 phenol 2-monooxygenas 93.7 0.039 8.5E-07 66.6 2.7 37 60-96 31-67 (634)
264 PLN02172 flavin-containing mon 93.6 0.14 3E-06 59.4 7.1 68 506-577 113-183 (461)
265 COG1635 THI4 Ribulose 1,5-bisp 93.6 0.18 3.8E-06 51.0 6.7 31 331-365 33-63 (262)
266 PRK07803 sdhA succinate dehydr 93.6 0.035 7.6E-07 66.9 2.1 38 60-98 7-44 (626)
267 PLN02815 L-aspartate oxidase 93.6 0.043 9.4E-07 65.5 2.8 39 58-98 26-64 (594)
268 PF07992 Pyr_redox_2: Pyridine 93.6 0.041 8.9E-07 55.8 2.3 33 63-96 1-33 (201)
269 PRK08132 FAD-dependent oxidore 93.6 0.036 7.7E-07 66.0 2.1 37 60-97 22-58 (547)
270 PRK06069 sdhA succinate dehydr 93.6 0.035 7.5E-07 66.5 2.0 38 61-98 5-44 (577)
271 PLN02676 polyamine oxidase 93.6 0.047 1E-06 63.8 3.1 39 60-98 25-63 (487)
272 PLN02172 flavin-containing mon 93.6 0.053 1.2E-06 62.8 3.4 39 59-98 8-46 (461)
273 PRK09078 sdhA succinate dehydr 93.6 0.036 7.8E-07 66.5 2.1 38 60-98 11-48 (598)
274 KOG4716|consensus 93.5 0.046 1E-06 58.1 2.5 47 58-105 16-71 (503)
275 TIGR01176 fum_red_Fp fumarate 93.5 0.04 8.7E-07 65.7 2.3 38 61-98 3-41 (580)
276 COG3573 Predicted oxidoreducta 93.4 0.048 1E-06 57.9 2.5 36 60-96 4-39 (552)
277 PRK06912 acoL dihydrolipoamide 93.3 0.045 9.8E-07 63.6 2.4 41 63-104 2-42 (458)
278 PRK07057 sdhA succinate dehydr 93.3 0.042 9E-07 65.9 2.2 38 60-98 11-48 (591)
279 PRK10157 putative oxidoreducta 93.2 0.13 2.8E-06 59.2 5.8 53 506-565 110-162 (428)
280 PRK06263 sdhA succinate dehydr 93.1 0.044 9.4E-07 65.1 1.9 35 60-96 6-40 (543)
281 PF01134 GIDA: Glucose inhibit 93.1 0.18 4E-06 56.3 6.6 21 332-352 3-23 (392)
282 TIGR02734 crtI_fam phytoene de 93.1 0.046 1E-06 64.3 2.0 58 510-573 225-282 (502)
283 PLN00128 Succinate dehydrogena 93.0 0.049 1.1E-06 65.7 2.1 38 60-98 49-86 (635)
284 PLN02568 polyamine oxidase 93.0 0.061 1.3E-06 63.5 2.9 38 61-98 5-46 (539)
285 PRK08626 fumarate reductase fl 93.0 0.049 1.1E-06 65.9 2.1 37 61-98 5-41 (657)
286 TIGR01812 sdhA_frdA_Gneg succi 93.0 0.048 1E-06 65.2 2.1 35 63-98 1-35 (566)
287 PRK12416 protoporphyrinogen ox 93.0 0.057 1.2E-06 62.9 2.6 36 63-98 3-43 (463)
288 TIGR00136 gidA glucose-inhibit 93.0 0.054 1.2E-06 63.8 2.3 34 62-96 1-34 (617)
289 PRK05868 hypothetical protein; 92.9 0.061 1.3E-06 60.7 2.7 33 63-96 3-35 (372)
290 PRK08071 L-aspartate oxidase; 92.9 0.053 1.1E-06 63.8 2.2 36 61-98 3-38 (510)
291 PRK07573 sdhA succinate dehydr 92.9 0.054 1.2E-06 65.4 2.3 37 60-97 34-70 (640)
292 COG0578 GlpA Glycerol-3-phosph 92.9 0.066 1.4E-06 61.9 2.8 38 58-96 9-46 (532)
293 PRK07233 hypothetical protein; 92.8 0.058 1.3E-06 62.0 2.3 35 63-98 1-35 (434)
294 PTZ00306 NADH-dependent fumara 92.8 0.069 1.5E-06 69.0 3.1 38 60-98 408-445 (1167)
295 PRK05335 tRNA (uracil-5-)-meth 92.7 0.061 1.3E-06 60.7 2.2 34 62-96 3-36 (436)
296 PF06039 Mqo: Malate:quinone o 92.7 0.33 7.2E-06 54.7 7.8 69 508-578 186-254 (488)
297 PF06039 Mqo: Malate:quinone o 92.6 0.066 1.4E-06 60.1 2.2 39 60-98 2-41 (488)
298 PRK05192 tRNA uridine 5-carbox 92.6 0.14 3E-06 60.6 4.9 48 514-568 111-158 (618)
299 PF04820 Trp_halogenase: Trypt 92.5 0.056 1.2E-06 62.5 1.6 53 506-564 156-208 (454)
300 COG0492 TrxB Thioredoxin reduc 92.5 0.077 1.7E-06 57.8 2.5 60 512-576 187-247 (305)
301 COG3380 Predicted NAD/FAD-depe 92.4 0.073 1.6E-06 55.3 2.1 35 63-98 3-37 (331)
302 TIGR00551 nadB L-aspartate oxi 92.4 0.07 1.5E-06 62.5 2.2 36 61-98 2-37 (488)
303 TIGR03378 glycerol3P_GlpB glyc 92.2 0.076 1.7E-06 60.0 2.1 60 512-575 271-330 (419)
304 PRK08641 sdhA succinate dehydr 92.1 0.078 1.7E-06 63.5 2.1 36 62-98 4-39 (589)
305 PRK10262 thioredoxin reductase 92.0 0.075 1.6E-06 58.6 1.8 57 513-572 194-253 (321)
306 TIGR03219 salicylate_mono sali 92.0 0.095 2.1E-06 60.0 2.6 34 63-96 2-35 (414)
307 TIGR00275 flavoprotein, HI0933 91.9 0.061 1.3E-06 61.3 0.9 33 65-98 1-33 (400)
308 TIGR02061 aprA adenosine phosp 91.8 0.085 1.9E-06 63.1 2.1 35 63-97 1-38 (614)
309 TIGR03315 Se_ygfK putative sel 91.8 0.12 2.7E-06 64.6 3.5 39 59-98 535-573 (1012)
310 PRK13800 putative oxidoreducta 91.7 0.09 2E-06 66.2 2.2 36 60-96 12-47 (897)
311 PF00996 GDI: GDP dissociation 91.5 0.11 2.4E-06 59.1 2.4 39 59-98 2-40 (438)
312 PLN02927 antheraxanthin epoxid 91.3 0.11 2.5E-06 62.1 2.3 35 60-95 80-114 (668)
313 COG1232 HemY Protoporphyrinoge 91.2 0.13 2.8E-06 58.6 2.6 35 64-98 3-38 (444)
314 COG1053 SdhA Succinate dehydro 91.2 0.11 2.3E-06 61.5 2.0 38 60-98 5-42 (562)
315 PRK15317 alkyl hydroperoxide r 91.1 0.13 2.9E-06 60.7 2.6 58 515-575 398-457 (517)
316 PRK07512 L-aspartate oxidase; 91.0 0.11 2.4E-06 61.2 1.9 34 60-96 8-41 (513)
317 TIGR00137 gid_trmFO tRNA:m(5)U 90.9 0.13 2.7E-06 58.5 2.2 35 63-98 2-36 (433)
318 COG1252 Ndh NADH dehydrogenase 90.9 0.45 9.7E-06 53.5 6.4 34 63-96 5-39 (405)
319 TIGR02731 phytoene_desat phyto 90.9 0.14 2.9E-06 59.5 2.5 35 63-98 1-35 (453)
320 PRK06475 salicylate hydroxylas 90.8 0.13 2.9E-06 58.5 2.4 33 63-96 4-36 (400)
321 KOG2820|consensus 90.8 0.15 3.2E-06 54.7 2.4 36 60-96 6-41 (399)
322 TIGR01316 gltA glutamate synth 90.7 0.2 4.4E-06 57.9 3.7 40 58-98 130-169 (449)
323 COG2509 Uncharacterized FAD-de 90.7 0.75 1.6E-05 51.6 7.7 35 138-172 17-55 (486)
324 PRK12831 putative oxidoreducta 90.7 0.2 4.3E-06 58.2 3.6 40 58-98 137-176 (464)
325 PRK12810 gltD glutamate syntha 90.6 0.18 4E-06 58.7 3.2 39 59-98 141-179 (471)
326 KOG2960|consensus 90.5 0.089 1.9E-06 52.3 0.4 37 60-96 75-112 (328)
327 PRK11749 dihydropyrimidine deh 90.3 0.23 4.9E-06 57.8 3.6 40 58-98 137-176 (457)
328 PRK10015 oxidoreductase; Provi 90.2 0.53 1.1E-05 54.2 6.5 52 507-565 111-162 (429)
329 TIGR01372 soxA sarcosine oxida 90.1 0.17 3.7E-06 64.4 2.6 38 60-98 162-199 (985)
330 COG3349 Uncharacterized conser 90.0 0.19 4E-06 57.4 2.4 34 64-98 3-36 (485)
331 PF13738 Pyr_redox_3: Pyridine 89.8 0.27 5.8E-06 49.9 3.3 31 332-365 1-31 (203)
332 TIGR03140 AhpF alkyl hydropero 89.7 0.18 4E-06 59.4 2.2 55 516-573 400-456 (515)
333 KOG1335|consensus 89.5 0.22 4.8E-06 54.2 2.4 45 60-105 38-83 (506)
334 PRK01747 mnmC bifunctional tRN 89.4 0.46 9.9E-06 58.0 5.4 32 330-365 262-293 (662)
335 PRK07845 flavoprotein disulfid 89.2 0.21 4.6E-06 58.1 2.3 41 63-105 3-44 (466)
336 KOG0685|consensus 89.2 0.23 4.9E-06 55.8 2.3 36 63-98 23-58 (498)
337 COG3075 GlpB Anaerobic glycero 88.8 0.25 5.5E-06 52.8 2.2 57 509-569 263-319 (421)
338 PLN02612 phytoene desaturase 88.7 0.29 6.2E-06 58.4 2.9 38 60-98 92-129 (567)
339 PF00070 Pyr_redox: Pyridine n 88.6 0.27 5.9E-06 41.9 2.0 34 64-98 2-35 (80)
340 PLN02529 lysine-specific histo 88.4 0.36 7.9E-06 58.7 3.5 38 60-98 159-196 (738)
341 PLN02852 ferredoxin-NADP+ redu 88.2 0.41 8.9E-06 55.6 3.7 39 60-98 25-64 (491)
342 PRK13977 myosin-cross-reactive 88.2 0.32 6.9E-06 57.0 2.7 38 61-98 22-62 (576)
343 TIGR02732 zeta_caro_desat caro 88.1 0.28 6E-06 57.2 2.2 57 515-572 230-289 (474)
344 PRK12770 putative glutamate sy 88.1 0.42 9E-06 53.5 3.6 38 60-98 17-54 (352)
345 PRK08255 salicylyl-CoA 5-hydro 88.0 0.29 6.2E-06 60.6 2.4 34 63-96 2-36 (765)
346 COG0665 DadA Glycine/D-amino a 87.9 1.2 2.5E-05 50.3 7.1 31 331-365 7-37 (387)
347 PRK12775 putative trifunctiona 87.8 0.42 9E-06 60.8 3.7 38 60-98 429-466 (1006)
348 KOG2614|consensus 87.8 0.3 6.5E-06 54.0 2.1 34 62-96 3-36 (420)
349 COG0445 GidA Flavin-dependent 87.6 0.33 7.2E-06 55.5 2.3 35 61-96 4-38 (621)
350 PRK12769 putative oxidoreducta 87.3 0.42 9.1E-06 58.2 3.2 38 60-98 326-363 (654)
351 PRK12778 putative bifunctional 87.1 0.49 1.1E-05 58.6 3.7 39 59-98 429-467 (752)
352 TIGR03378 glycerol3P_GlpB glyc 87.1 1.2 2.6E-05 50.4 6.4 34 62-96 1-34 (419)
353 PRK09853 putative selenate red 86.9 0.42 9E-06 59.8 2.9 39 59-98 537-575 (1019)
354 TIGR01811 sdhA_Bsu succinate d 86.9 0.28 6.1E-06 58.9 1.4 33 64-97 1-33 (603)
355 PLN02487 zeta-carotene desatur 86.8 0.64 1.4E-05 55.2 4.2 57 515-572 306-365 (569)
356 PRK12814 putative NADPH-depend 86.8 0.51 1.1E-05 57.3 3.6 39 59-98 191-229 (652)
357 KOG2853|consensus 86.7 0.37 8E-06 51.6 1.9 37 60-96 85-124 (509)
358 PLN02328 lysine-specific histo 86.6 0.98 2.1E-05 55.4 5.8 38 60-98 237-274 (808)
359 PRK05329 anaerobic glycerol-3- 86.4 1.5 3.2E-05 50.2 6.8 34 61-95 2-35 (422)
360 COG1148 HdrA Heterodisulfide r 85.9 0.48 1E-05 53.2 2.4 37 61-98 124-160 (622)
361 PLN02976 amine oxidase 85.6 0.51 1.1E-05 60.3 2.7 38 60-98 692-729 (1713)
362 KOG1399|consensus 85.4 0.49 1.1E-05 54.2 2.3 37 61-98 6-42 (448)
363 PF00743 FMO-like: Flavin-bind 85.3 0.4 8.6E-06 56.5 1.5 67 506-573 86-156 (531)
364 KOG2404|consensus 85.2 0.56 1.2E-05 49.9 2.4 41 63-104 11-58 (477)
365 PRK09897 hypothetical protein; 85.1 0.58 1.3E-05 55.0 2.7 37 62-98 2-39 (534)
366 TIGR01318 gltD_gamma_fam gluta 85.0 0.82 1.8E-05 53.2 3.9 38 60-98 140-177 (467)
367 TIGR00136 gidA glucose-inhibit 84.5 2.1 4.5E-05 50.8 6.9 54 514-573 107-160 (617)
368 KOG0042|consensus 84.4 0.47 1E-05 54.0 1.4 36 60-96 66-101 (680)
369 COG2072 TrkA Predicted flavopr 84.1 3.2 7E-05 47.9 8.2 32 331-365 11-42 (443)
370 COG0029 NadB Aspartate oxidase 83.6 0.63 1.4E-05 52.8 2.0 32 63-96 9-40 (518)
371 PF13450 NAD_binding_8: NAD(P) 83.5 0.27 5.8E-06 40.6 -0.7 29 333-365 1-29 (68)
372 TIGR03862 flavo_PP4765 unchara 83.4 3.4 7.4E-05 46.3 7.8 88 466-571 57-145 (376)
373 PRK13339 malate:quinone oxidor 83.3 4.5 9.8E-05 47.3 9.0 68 507-578 188-257 (497)
374 PRK12779 putative bifunctional 83.2 0.81 1.8E-05 57.7 3.1 38 60-98 305-342 (944)
375 TIGR01317 GOGAT_sm_gam glutama 83.1 0.89 1.9E-05 53.2 3.2 38 60-98 142-179 (485)
376 PLN03000 amine oxidase 83.1 0.74 1.6E-05 56.6 2.5 38 60-98 183-220 (881)
377 PF13434 K_oxygenase: L-lysine 82.7 0.45 9.8E-06 52.8 0.5 36 61-96 2-37 (341)
378 TIGR02485 CobZ_N-term precorri 82.6 0.5 1.1E-05 54.4 0.8 62 792-858 363-429 (432)
379 KOG2311|consensus 82.5 1 2.2E-05 50.6 3.0 33 58-90 25-57 (679)
380 KOG4254|consensus 82.4 0.86 1.9E-05 50.8 2.5 59 509-573 269-327 (561)
381 KOG2755|consensus 81.9 0.79 1.7E-05 47.6 1.8 33 64-96 2-35 (334)
382 KOG3851|consensus 81.8 1 2.2E-05 48.1 2.6 35 60-94 38-73 (446)
383 KOG1439|consensus 81.8 0.8 1.7E-05 50.4 1.9 39 59-98 2-40 (440)
384 PRK12809 putative oxidoreducta 81.4 1.3 2.9E-05 53.7 3.9 38 60-98 309-346 (639)
385 PTZ00318 NADH dehydrogenase-li 80.8 1.2 2.7E-05 51.1 3.2 39 57-96 6-44 (424)
386 PRK06184 hypothetical protein; 80.5 5.4 0.00012 46.9 8.5 34 328-365 3-36 (502)
387 PRK09754 phenylpropionate diox 80.4 1.2 2.6E-05 50.6 2.9 61 509-577 191-251 (396)
388 PRK13512 coenzyme A disulfide 80.3 1.1 2.4E-05 51.7 2.6 36 63-98 3-39 (438)
389 PTZ00188 adrenodoxin reductase 80.2 1.1 2.3E-05 51.7 2.4 38 61-98 39-76 (506)
390 KOG1399|consensus 79.0 3.5 7.6E-05 47.4 6.0 69 507-578 93-164 (448)
391 TIGR01988 Ubi-OHases Ubiquinon 79.0 4.2 9E-05 45.7 6.7 33 331-367 2-34 (385)
392 PRK09564 coenzyme A disulfide 78.8 1.2 2.7E-05 51.3 2.4 60 510-577 197-256 (444)
393 COG2509 Uncharacterized FAD-de 77.9 1.3 2.9E-05 49.6 2.1 37 60-96 17-57 (486)
394 PRK13984 putative oxidoreducta 77.8 1.8 3.9E-05 52.2 3.5 39 59-98 281-319 (604)
395 KOG1276|consensus 77.6 1.7 3.8E-05 48.3 2.8 38 61-98 11-49 (491)
396 COG2907 Predicted NAD/FAD-bind 77.1 1.5 3.3E-05 47.4 2.2 37 60-98 7-43 (447)
397 PF00743 FMO-like: Flavin-bind 76.3 1.4 3E-05 52.0 1.9 35 63-98 3-37 (531)
398 PRK04965 NADH:flavorubredoxin 76.2 1.7 3.6E-05 49.1 2.4 58 514-578 193-250 (377)
399 TIGR03169 Nterm_to_SelD pyridi 75.0 2 4.4E-05 48.1 2.7 33 64-96 2-36 (364)
400 TIGR02733 desat_CrtD C-3',4' d 74.5 4.6 0.0001 47.4 5.6 36 62-98 2-37 (492)
401 TIGR02730 carot_isom carotene 74.2 4.2 9E-05 47.8 5.1 36 62-98 1-36 (493)
402 COG5044 MRS6 RAB proteins gera 74.1 2.3 4.9E-05 46.5 2.6 56 60-119 5-60 (434)
403 PRK12771 putative glutamate sy 73.7 3.2 7E-05 49.6 4.1 38 60-98 136-173 (564)
404 TIGR02360 pbenz_hydroxyl 4-hyd 73.7 6 0.00013 44.9 6.1 31 331-365 5-35 (390)
405 KOG2960|consensus 73.7 3.1 6.8E-05 41.7 3.2 34 139-172 76-110 (328)
406 PRK06185 hypothetical protein; 73.2 9.4 0.0002 43.4 7.6 34 61-95 6-39 (407)
407 PRK07538 hypothetical protein; 72.6 7.3 0.00016 44.5 6.6 32 330-365 2-33 (413)
408 PRK06567 putative bifunctional 72.4 3 6.4E-05 52.0 3.3 36 59-95 381-416 (1028)
409 COG0644 FixC Dehydrogenases (f 69.2 2.1 4.5E-05 48.7 1.0 34 139-173 3-36 (396)
410 PF13454 NAD_binding_9: FAD-NA 69.0 2.9 6.2E-05 40.7 1.9 31 65-95 1-35 (156)
411 KOG2415|consensus 68.1 2.6 5.7E-05 46.6 1.5 74 502-577 181-268 (621)
412 COG0569 TrkA K+ transport syst 67.7 3.3 7.3E-05 43.0 2.1 33 63-96 2-34 (225)
413 TIGR02732 zeta_caro_desat caro 67.1 8.2 0.00018 45.1 5.4 35 63-98 1-35 (474)
414 COG3634 AhpF Alkyl hydroperoxi 65.6 3.7 7.9E-05 44.5 1.9 59 514-575 400-460 (520)
415 PF13434 K_oxygenase: L-lysine 65.4 10 0.00023 42.1 5.6 63 506-571 97-161 (341)
416 KOG2403|consensus 65.4 6.2 0.00013 45.4 3.7 24 329-352 56-79 (642)
417 TIGR02734 crtI_fam phytoene de 65.0 8.3 0.00018 45.3 5.1 34 64-98 1-34 (502)
418 KOG4254|consensus 64.7 5.5 0.00012 44.8 3.1 40 58-98 11-50 (561)
419 TIGR02731 phytoene_desat phyto 63.1 11 0.00024 43.6 5.5 49 515-565 224-274 (453)
420 COG4529 Uncharacterized protei 62.7 5.9 0.00013 45.1 3.0 37 62-98 2-40 (474)
421 COG3486 IucD Lysine/ornithine 61.6 5.8 0.00013 44.1 2.6 37 60-96 4-40 (436)
422 PLN02487 zeta-carotene desatur 58.2 13 0.00028 44.3 5.0 38 60-98 74-111 (569)
423 PLN00093 geranylgeranyl diphos 57.7 4.9 0.00011 46.5 1.3 37 135-172 35-71 (450)
424 PRK15317 alkyl hydroperoxide r 57.4 35 0.00076 40.3 8.4 22 331-352 214-235 (517)
425 COG0445 GidA Flavin-dependent 57.3 12 0.00026 43.3 4.2 53 514-572 111-163 (621)
426 PF05834 Lycopene_cycl: Lycope 55.6 5.4 0.00012 45.0 1.2 31 141-172 1-33 (374)
427 TIGR01292 TRX_reduct thioredox 55.4 44 0.00096 35.7 8.3 33 62-95 1-33 (300)
428 TIGR02023 BchP-ChlP geranylger 54.6 4.5 9.7E-05 45.8 0.3 32 140-172 1-32 (388)
429 PF02254 TrkA_N: TrkA-N domain 54.2 7.1 0.00015 35.5 1.5 32 64-96 1-32 (116)
430 KOG2844|consensus 53.3 10 0.00022 44.8 2.8 35 60-94 38-72 (856)
431 PF02558 ApbA: Ketopantoate re 53.3 7.6 0.00017 37.2 1.7 31 64-95 1-31 (151)
432 COG0562 Glf UDP-galactopyranos 53.1 5.8 0.00013 42.7 0.8 32 140-172 2-33 (374)
433 PRK07333 2-octaprenyl-6-methox 52.4 6.6 0.00014 44.5 1.2 34 140-173 2-36 (403)
434 PRK08020 ubiF 2-octaprenyl-3-m 52.2 6.7 0.00014 44.3 1.2 34 138-172 4-37 (391)
435 COG1206 Gid NAD(FAD)-utilizing 52.2 8.1 0.00017 41.7 1.7 32 64-96 6-37 (439)
436 TIGR01789 lycopene_cycl lycope 51.9 5.9 0.00013 44.6 0.7 33 141-173 1-34 (370)
437 PTZ00363 rab-GDP dissociation 51.4 8.5 0.00018 44.4 1.9 34 138-172 3-36 (443)
438 KOG2495|consensus 51.2 7 0.00015 43.7 1.1 35 62-96 219-266 (491)
439 PRK07208 hypothetical protein; 50.3 30 0.00064 40.3 6.3 56 514-571 228-284 (479)
440 PLN02985 squalene monooxygenas 49.7 45 0.00097 39.4 7.6 57 510-570 154-211 (514)
441 TIGR03140 AhpF alkyl hydropero 49.2 58 0.0013 38.4 8.5 24 329-352 213-236 (515)
442 KOG2665|consensus 48.9 12 0.00027 40.1 2.4 37 136-172 45-82 (453)
443 COG1233 Phytoene dehydrogenase 48.9 21 0.00046 41.8 4.7 33 139-172 3-35 (487)
444 PRK08773 2-octaprenyl-3-methyl 48.6 8.7 0.00019 43.5 1.4 34 138-172 5-38 (392)
445 PRK10262 thioredoxin reductase 48.5 72 0.0015 34.9 8.7 34 60-94 5-38 (321)
446 PLN02463 lycopene beta cyclase 47.2 8 0.00017 44.7 0.8 41 822-862 295-335 (447)
447 PRK08013 oxidoreductase; Provi 47.0 8.7 0.00019 43.7 1.1 34 139-173 3-36 (400)
448 PRK07608 ubiquinone biosynthes 47.0 7.9 0.00017 43.6 0.8 34 139-173 5-38 (388)
449 PRK09754 phenylpropionate diox 46.3 13 0.00028 42.3 2.3 34 63-97 146-179 (396)
450 PRK06912 acoL dihydrolipoamide 45.6 13 0.00028 43.2 2.3 35 63-98 172-206 (458)
451 TIGR01989 COQ6 Ubiquinone bios 45.4 9 0.00019 44.2 0.9 33 140-172 1-36 (437)
452 PRK07364 2-octaprenyl-6-methox 45.0 52 0.0011 37.4 7.1 54 510-567 128-181 (415)
453 PRK06126 hypothetical protein; 44.8 58 0.0012 38.7 7.7 56 508-567 130-188 (545)
454 PRK05976 dihydrolipoamide dehy 44.7 13 0.00029 43.3 2.2 35 62-97 181-215 (472)
455 PRK05714 2-octaprenyl-3-methyl 44.7 9.9 0.00021 43.2 1.1 33 139-172 2-34 (405)
456 PRK14989 nitrite reductase sub 44.4 14 0.0003 46.4 2.3 34 63-96 5-41 (847)
457 TIGR01790 carotene-cycl lycope 44.3 9.2 0.0002 43.2 0.7 31 141-172 1-31 (388)
458 TIGR01984 UbiH 2-polyprenyl-6- 43.9 11 0.00024 42.3 1.3 33 141-173 1-33 (382)
459 KOG4405|consensus 43.8 19 0.00041 40.0 2.9 38 60-98 7-44 (547)
460 KOG0029|consensus 43.6 7.2 0.00016 45.6 -0.2 32 332-367 19-50 (501)
461 PRK11883 protoporphyrinogen ox 43.6 6.7 0.00015 45.2 -0.5 33 331-365 3-35 (451)
462 KOG1800|consensus 43.5 19 0.00041 39.8 2.9 34 63-96 22-56 (468)
463 PRK12810 gltD glutamate syntha 43.3 45 0.00097 38.9 6.3 59 515-576 340-410 (471)
464 TIGR02374 nitri_red_nirB nitri 43.2 13 0.00029 46.2 2.0 33 64-96 1-35 (785)
465 PRK07494 2-octaprenyl-6-methox 42.8 11 0.00023 42.6 1.0 33 139-172 7-39 (388)
466 PRK07251 pyridine nucleotide-d 42.6 15 0.00033 42.2 2.2 34 63-97 159-192 (438)
467 KOG1298|consensus 42.5 15 0.00032 40.7 1.8 39 137-176 43-81 (509)
468 PRK08243 4-hydroxybenzoate 3-m 42.3 55 0.0012 37.0 6.7 50 515-568 114-163 (392)
469 PF01210 NAD_Gly3P_dh_N: NAD-d 42.2 16 0.00034 35.6 1.9 31 64-95 2-32 (157)
470 TIGR03197 MnmC_Cterm tRNA U-34 42.1 57 0.0012 36.6 6.8 49 510-566 141-189 (381)
471 COG3634 AhpF Alkyl hydroperoxi 42.0 64 0.0014 35.4 6.4 24 329-352 212-235 (520)
472 PTZ00318 NADH dehydrogenase-li 42.0 15 0.00033 42.1 2.0 35 63-97 175-222 (424)
473 TIGR01421 gluta_reduc_1 glutat 41.9 16 0.00034 42.3 2.2 34 63-97 168-201 (450)
474 PRK06996 hypothetical protein; 41.5 13 0.00029 42.1 1.5 36 137-172 9-47 (398)
475 PRK06467 dihydrolipoamide dehy 41.4 17 0.00037 42.3 2.4 35 63-98 176-210 (471)
476 COG0446 HcaD Uncharacterized N 41.3 17 0.00036 41.1 2.3 36 62-98 137-172 (415)
477 PRK09126 hypothetical protein; 40.8 11 0.00023 42.6 0.6 34 139-173 3-36 (392)
478 TIGR00031 UDP-GALP_mutase UDP- 40.6 11 0.00025 42.3 0.8 32 140-172 2-33 (377)
479 PLN02697 lycopene epsilon cycl 40.5 11 0.00025 44.4 0.7 42 821-862 372-413 (529)
480 PRK07233 hypothetical protein; 40.3 36 0.00078 38.8 4.9 52 514-572 208-259 (434)
481 TIGR01423 trypano_reduc trypan 40.2 12 0.00025 43.9 0.8 34 138-171 2-35 (486)
482 PRK07846 mycothione reductase; 40.2 18 0.00039 41.9 2.3 35 62-97 167-201 (451)
483 TIGR02032 GG-red-SF geranylger 39.8 66 0.0014 34.2 6.6 53 508-566 95-147 (295)
484 TIGR01316 gltA glutamate synth 39.7 78 0.0017 36.6 7.5 57 515-573 320-393 (449)
485 PRK05732 2-octaprenyl-6-methox 38.7 14 0.0003 41.7 1.0 34 139-172 3-38 (395)
486 KOG2820|consensus 38.6 18 0.00039 39.4 1.8 61 510-575 159-219 (399)
487 PRK06617 2-octaprenyl-6-methox 38.1 14 0.00029 41.6 0.9 32 140-172 2-33 (374)
488 PRK08010 pyridine nucleotide-d 38.1 13 0.00029 42.8 0.8 33 139-172 3-35 (441)
489 COG3349 Uncharacterized conser 38.0 10 0.00022 43.7 -0.2 41 332-376 4-44 (485)
490 TIGR01372 soxA sarcosine oxida 37.6 77 0.0017 40.7 7.5 61 514-578 361-422 (985)
491 TIGR03385 CoA_CoA_reduc CoA-di 36.9 22 0.00048 40.7 2.4 34 63-97 139-172 (427)
492 PRK06718 precorrin-2 dehydroge 36.8 23 0.0005 36.1 2.2 32 62-94 11-42 (202)
493 COG0493 GltD NADPH-dependent g 36.8 24 0.00052 40.8 2.5 37 61-98 123-159 (457)
494 KOG2844|consensus 36.7 97 0.0021 37.1 7.2 51 510-567 193-243 (856)
495 PRK05249 soluble pyridine nucl 36.6 9.6 0.00021 44.2 -0.7 56 510-572 222-277 (461)
496 PLN02576 protoporphyrinogen ox 36.6 11 0.00024 44.1 -0.1 31 331-365 15-46 (496)
497 PRK08850 2-octaprenyl-6-methox 36.6 14 0.0003 42.1 0.6 33 139-172 4-36 (405)
498 TIGR01424 gluta_reduc_2 glutat 36.4 9.3 0.0002 44.2 -0.8 30 330-363 4-33 (446)
499 PRK06249 2-dehydropantoate 2-r 36.3 21 0.00046 39.0 2.0 32 63-95 7-38 (313)
500 PLN02268 probable polyamine ox 36.2 10 0.00022 43.6 -0.5 30 332-365 4-33 (435)
No 1
>KOG1238|consensus
Probab=100.00 E-value=4.7e-113 Score=954.59 Aligned_cols=471 Identities=46% Similarity=0.775 Sum_probs=425.7
Q ss_pred eeechhHHhhhccccCChHHHHHHHHcCCCCCChhchHHHHHHhccCCCCCCCCCCccCCCcceeeccCCCCChhHHHHH
Q psy1205 390 VLGGTSVLNGMMYIRGSRADYDNWAKAGNPGWSYQDVLPYFLKSEDNQQATMMDQGFHGVGGYLTVTQFPYHPPLSHSIL 469 (868)
Q Consensus 390 ~lGGsS~in~~~~~r~~~~df~~W~~~G~~~Ws~~~l~pyy~k~e~~~~~~~~~~~~~g~~Gp~~~~~~~~~~~~~~~~~ 469 (868)
+|||||++|+|+|.|++++|||+|++.|++||+|++++|||+|+|+.........++|+..||..++...+.+++...+.
T Consensus 139 VLGGsS~iN~m~Y~RG~r~Dyd~W~~~gnpgW~y~~vl~yf~k~E~~~~~~~~~~~y~~~~g~~~ve~~~~~~~~~~~~~ 218 (623)
T KOG1238|consen 139 VLGGSSVLNAMFYVRGNRRDYDRWAAEGNPGWSYDEVLPYFKKSEDKVVPDPELTPYHGAGGPLLVEAGVYPNNLFTAFH 218 (623)
T ss_pred eecccccccceEEecCCccchHHHHHhcCCCCCHHHHHHHHHHHhhccCCCcccCcccccCCcceeccccccCchhhHhH
Confidence 99999999999999999999999999999999999999999999998766666667999999999999999999999999
Q ss_pred HHHHHCCCCCCCCCCCCcceeeeeeccCCCCcccchhhhhhhhccC-CCCeEEEccceEeEEEEcCCCCeEEEEEEEEC-
Q psy1205 470 QGAMELGMPVRDLNGVSHTGFMIAQTTTRNGSRLSTSKAFLRPIIS-RNNLHILLNTTVTRVIVDPLTKAAIGVEFLTN- 547 (868)
Q Consensus 470 ~a~~~lG~~~~~~n~~~~~G~~~~~~~~~~g~R~s~~~~~L~~~~~-~~nl~I~~~~~V~rIl~d~~~~~a~GV~~~~~- 547 (868)
++..++|.+..|+||..+.|+...+.+.++|.|+++..+|+.++.. |+||+|..++.|+||++|+.++++.||++.++
T Consensus 219 ~ag~e~G~~~~D~nG~~~tg~~~l~~t~~~g~R~s~~~a~l~~~~~~R~NL~~~~~~~vtrvl~D~~~~~a~gv~~~~~~ 298 (623)
T KOG1238|consen 219 RAGTEIGGSIFDRNGERHTGASLLQYTIRNGIRVSLAKAYLKPIRLTRPNLHISRNAAVTRVLIDPAGKRAKGVEFVRDG 298 (623)
T ss_pred HhHHhcCCCccCCCCccccchhhhhccccCCEEEEehhhhhhhhhccCccccccccceEEEEEEcCCCceEEEEEEEecC
Confidence 9999999888999999999999999999999999999999999988 89999999999999999999999999999998
Q ss_pred CeEEEEEeccEEEEccCCcCchHHHHhcCCCChhhhhhcCCCcccCCCCCcccccccccceEEEEEcCCcccc----cCH
Q psy1205 548 GRLERLQAKNEVIVCAGAVDSPRILLLSGIGPREELRRLNIAPIHDLPGVGKNLHNHVAHFLNFFINDTDTTA----LNW 623 (868)
Q Consensus 548 g~~~~v~A~k~VILAAGai~SP~LLl~SGIGp~~~L~~~gI~~~~dlp~VG~nL~dH~~~~~~~~~~~~~~~~----~~~ 623 (868)
+++++|+|+||||||||||+||||||+|||||++||+++|||++.|||+||+|||||+..++......+.... ...
T Consensus 299 ~~~~~v~a~kEVILSAGAi~SPQLLMLSGIGP~~~L~~~gIpvv~dLP~VG~nLqDH~~~~~~~~~~~~~~~~~~~~~~~ 378 (623)
T KOG1238|consen 299 GKEHTVKARKEVILSAGAINSPQLLMLSGIGPADHLKKLGIPVVLDLPGVGQNLQDHPMNPGFVFSTNPVELSLIRLVGI 378 (623)
T ss_pred ceeeeecccceEEEeccccCCHHHHHHcCCCcHHHHHhcCCCeeccCcccccccccccccceeeecCCCccccccccccc
Confidence 8999999999999999999999999999999999999999999999999999999999997776665543222 235
Q ss_pred HHHHHHHHhCCCCCcCCCcceEEEEEecCCCCCCCCCCCeEEEeecccccccccCc----cccccCCCCCCCCCCCCeEE
Q psy1205 624 ATAMEYLLFRDGLMSGTGLSEVTGFVHSRLSNPAEDNPDLQIFFSGYLANCARTGQ----VGERSDGMNNSTPVPQRTIS 699 (868)
Q Consensus 624 ~~~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~ 699 (868)
..+.+|+..++|++...+ .+..+|+++.......++||+|+++............ .++..+.+.. .....+.+.
T Consensus 379 ~~~~~yl~~~~G~~~~~~-~e~~~f~~t~~~~~~~~~PD~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~-~~~~~~~~~ 456 (623)
T KOG1238|consen 379 TTVGQYLEGGSGPLASPG-VETLGFINTVSSNLSLDWPDIELHFVAGSLSSDGLTALRKALGEIYQALFG-ELTNSDSFV 456 (623)
T ss_pred hHHHHHHHcCCCCcccCc-ceeeEEeccccccCcCCCCCeeEEeccccccccchhhhhhhcchHHHHhhh-hhhcCceeE
Confidence 678899999999998877 7889999999888778999999877654433221111 1111111110 011234688
Q ss_pred EEEeeeecCCCcEEEecCCCCCCCCeeccCCCCChhHHHHHHHHHHHHHHHHcchhHhhcCcccccCCCCCCCCCCCCCH
Q psy1205 700 IFPTVLHPKSRGYLTLKDNNPQTPPLIFARYLTHPDDVKTLVDGIKIAIRLTQTAALQKYGFRIDTTPVKGCENLPFGCD 779 (868)
Q Consensus 700 ~~~~~~~P~s~G~V~L~s~d~~~~P~i~~~y~~~~~D~~~~~~~~~~~~~i~~~~~~~~~g~~~~~~p~~~~~~~~~~sd 779 (868)
++..+++|+|||+|+|+|+||++.|+|++||+.+|+|+++++++++.+.++.++++|++++..+...+.++|+.+.+.+|
T Consensus 457 i~~~~l~P~SrG~l~L~s~nP~~~P~I~~NY~~~p~Dv~~~vegi~~~~~l~~s~af~~~~~r~~~~~~~~c~~~~~~sd 536 (623)
T KOG1238|consen 457 IFPKLLRPKSRGRLKLRSTNPRDNPLITPNYFTHPEDVATLVEGIRTIIRLSNSKAFQRFGARLWKKPVPGCDLLAFLSD 536 (623)
T ss_pred EeehhcCCCccceEEecCCCCCcCceeccCcCCCHHHHHHHHHHHHHHHHHHcCHHHHHhcchhccccCCCcccccCCCH
Confidence 88899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhccCCcccccccccccCCCCCCCccCCCCcEeccCCcEEeccCCCCCCCCccchHHHHHHHHHHHHHHHHHh
Q psy1205 780 AYWECAIRRNTGAENHQAGSCKMGPASDPSAVVSPELKVHGVDRLRVVDCSIMPAVTSGNTNAPAIMIAEKASDLIKQQW 859 (868)
Q Consensus 780 ~~~~~~i~~~~~t~~H~~GTcrMG~~~dp~~VVD~~lrV~Gv~nL~V~DaSv~P~~~~~NP~~Ti~alAeraAd~I~~~~ 859 (868)
+||+|++|....|.||++|||+|||+.||.+|||+++||||++||||+||||||.++++||++|+||||||+||+|+++|
T Consensus 537 ~yw~c~~R~~~~TiyH~~GtckMGp~~D~~aVVD~~lrV~Gv~~LRVVDaSimP~~psgN~nA~v~MIgek~ad~Ik~~~ 616 (623)
T KOG1238|consen 537 AYWECFCRHTVVTIYHYSGTCKMGPSSDPTAVVDPQLRVHGVRGLRVVDASIMPESPSGNPNAPVMMIGEKAADMIKEEW 616 (623)
T ss_pred HHHHHHHHhccceeeccCCceEeCCccCCCcccCCcceeccccCceEeeccccCCCCCCCccHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccc
Q psy1205 860 IGK 862 (868)
Q Consensus 860 ~~~ 862 (868)
...
T Consensus 617 ~~~ 619 (623)
T KOG1238|consen 617 LAN 619 (623)
T ss_pred hhc
Confidence 764
No 2
>PRK02106 choline dehydrogenase; Validated
Probab=100.00 E-value=5.2e-80 Score=727.48 Aligned_cols=446 Identities=39% Similarity=0.658 Sum_probs=363.7
Q ss_pred CCCcceeechhHHhhhccccCChHHHHHHHHc-CCCCCChhchHHHHHHhccCCCCCCCCCCccCCCcceeeccC-CCCC
Q psy1205 385 CLLSPVLGGTSVLNGMMYIRGSRADYDNWAKA-GNPGWSYQDVLPYFLKSEDNQQATMMDQGFHGVGGYLTVTQF-PYHP 462 (868)
Q Consensus 385 ~l~G~~lGGsS~in~~~~~r~~~~df~~W~~~-G~~~Ws~~~l~pyy~k~e~~~~~~~~~~~~~g~~Gp~~~~~~-~~~~ 462 (868)
..+|++|||||+||+|+|.|+++.||+.|+.. |+++|+|++|+|||+|+|+... .+..+|+..||+.+... .+..
T Consensus 82 ~~~g~~lGGsS~iN~~~~~R~~~~Dfd~w~~~~g~~~Ws~~~l~py~~k~E~~~~---~~~~~~g~~gp~~~~~~~~~~~ 158 (560)
T PRK02106 82 CPRGKVLGGSSSINGMVYIRGNAMDYDNWAELPGLEGWSYADCLPYFKKAETRDG---GEDDYRGGDGPLSVTRGKPGTN 158 (560)
T ss_pred cccccccCCCCCccceEEecCCHHHHHHHHhhcCCCCCCHHHHHHHHHHhhccCC---CCccccCCCCCEEEeCCCCCCC
Confidence 34567999999999999999999999999987 8899999999999999998762 12356888999998765 4557
Q ss_pred hhHHHHHHHHHHCCCCC-CCCCCCCcceeeeeeccCCCCcccchhhhhhhhccCCCCeEEEccceEeEEEEcCCCCeEEE
Q psy1205 463 PLSHSILQGAMELGMPV-RDLNGVSHTGFMIAQTTTRNGSRLSTSKAFLRPIISRNNLHILLNTTVTRVIVDPLTKAAIG 541 (868)
Q Consensus 463 ~~~~~~~~a~~~lG~~~-~~~n~~~~~G~~~~~~~~~~g~R~s~~~~~L~~~~~~~nl~I~~~~~V~rIl~d~~~~~a~G 541 (868)
+....|.++++++|++. .+.+++...|++.|...|.+|.|+++..+||.++.+++|++|+++++|+||+++ +++|+|
T Consensus 159 ~~~~~~~~a~~~lG~~~~~~~~~~~~~g~~~~~~~~~~g~R~s~~~~~l~~a~~~~nl~i~~~a~V~rI~~~--~~~a~G 236 (560)
T PRK02106 159 PLFQAFVEAGVQAGYPRTDDLNGYQQEGFGPMDRTVTNGRRWSAARAYLDPALKRPNLTIVTHALTDRILFE--GKRAVG 236 (560)
T ss_pred HHHHHHHHHHHHcCCCcCCCCCCCCCceeEEEeeecCCCEEEChHHHhhccccCCCCcEEEcCCEEEEEEEe--CCeEEE
Confidence 78899999999999998 678888788988888888999999999999999988999999999999999998 679999
Q ss_pred EEEEECCeEEEEEeccEEEEccCCcCchHHHHhcCCCChhhhhhcCCCcccCCCCCcccccccccceEEEEEcCCccccc
Q psy1205 542 VEFLTNGRLERLQAKNEVIVCAGAVDSPRILLLSGIGPREELRRLNIAPIHDLPGVGKNLHNHVAHFLNFFINDTDTTAL 621 (868)
Q Consensus 542 V~~~~~g~~~~v~A~k~VILAAGai~SP~LLl~SGIGp~~~L~~~gI~~~~dlp~VG~nL~dH~~~~~~~~~~~~~~~~~ 621 (868)
|++.+.+...++.++|+||||||+|+||+|||+|||||+++|+++||+++.|||+||+|||||+...+.+.++.+.....
T Consensus 237 V~~~~~~~~~~~~~ak~VILaaGai~TP~LLl~SGIG~~~~L~~~gI~~~~dlP~VG~NL~dH~~~~~~~~~~~~~~~~~ 316 (560)
T PRK02106 237 VEYERGGGRETARARREVILSAGAINSPQLLQLSGIGPAEHLKELGIPVVHDLPGVGENLQDHLEVYIQYECKQPVSLYP 316 (560)
T ss_pred EEEEeCCcEEEEEeeeeEEEccCCCCCHHHHhhcCCCChHHHHhcCCceEeeCCCCCcChhhCccceEEEEeCCCccccc
Confidence 99988666666666689999999999999999999999999999999999999999999999999988887765432110
Q ss_pred -----C-HHHHHHHHHhCCCCCcCCCcceEEEEEecCCCCCCCCCCCeEEEeecccccccccCccccccCCCCCCCCCCC
Q psy1205 622 -----N-WATAMEYLLFRDGLMSGTGLSEVTGFVHSRLSNPAEDNPDLQIFFSGYLANCARTGQVGERSDGMNNSTPVPQ 695 (868)
Q Consensus 622 -----~-~~~~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 695 (868)
. .....+|...+.|++..... +..+|..... ....|++++.+.+... ...+. . ....
T Consensus 317 ~~~~~~~~~~~~~~~~~~~g~~~~~~~-~~~~~~~~~~---~~~~p~~~~~~~~~~~-----~~~~~-----~---~~~~ 379 (560)
T PRK02106 317 ALKWWNKPKIGAEWLFTGTGLGASNHF-EAGGFIRSRA---GVDWPNIQYHFLPVAI-----RYDGS-----N---AVKG 379 (560)
T ss_pred ccchhhhhHHHHHHHhcCCCCcccccc-ceeeEEecCC---CCCCCCeEEEEeeccc-----cccCC-----C---CCCC
Confidence 1 11234566667777654322 3334554321 1134666543321100 00000 0 0012
Q ss_pred CeEEEEEeeeecCCCcEEEecCCCCCCCCeeccCCCCChhHHHHHHHHHHHHHHHHcchhHhhcCcccccCCCCCCCCCC
Q psy1205 696 RTISIFPTVLHPKSRGYLTLKDNNPQTPPLIFARYLTHPDDVKTLVDGIKIAIRLTQTAALQKYGFRIDTTPVKGCENLP 775 (868)
Q Consensus 696 ~~~~~~~~~~~P~s~G~V~L~s~d~~~~P~i~~~y~~~~~D~~~~~~~~~~~~~i~~~~~~~~~g~~~~~~p~~~~~~~~ 775 (868)
..+.+.+.+++|.|+|+|+|+++||++.|+|+++|+.++.|++.+.++++++++++++.+++.+..... .| + ..
T Consensus 380 ~~~~~~~~~~~P~srG~V~L~s~d~~~~P~i~~~y~~~~~D~~~~~~~~~~~~~i~~~~~~~~~~~~~~-~p--~---~~ 453 (560)
T PRK02106 380 HGFQAHVGPMRSPSRGSVKLKSADPRAHPSILFNYMSTEQDWREFRDAIRLTREIMAQPALDPYRGREI-SP--G---AD 453 (560)
T ss_pred CeEEEEEEecCCcceEEEEEeCCCCccCceEccccCCCHHHHHHHHHHHHHHHHHHcChhhhhcccccc-CC--C---cc
Confidence 345666678899999999999999999999999999999999999999999999999988877643321 12 1 12
Q ss_pred CCCHHHHHHHHHhccCCcccccccccccCCCCCCCccCCCCcEeccCCcEEeccCCCCCCCCccchHHHHHHHHHHHHHH
Q psy1205 776 FGCDAYWECAIRRNTGAENHQAGSCKMGPASDPSAVVSPELKVHGVDRLRVVDCSIMPAVTSGNTNAPAIMIAEKASDLI 855 (868)
Q Consensus 776 ~~sd~~~~~~i~~~~~t~~H~~GTcrMG~~~dp~~VVD~~lrV~Gv~nL~V~DaSv~P~~~~~NP~~Ti~alAeraAd~I 855 (868)
..+|++|+++++....+.+|++||||||+ ||+||||++|||||++||||+|+||||+.+++||++|+||||||+||+|
T Consensus 454 ~~~~~~~~~~i~~~~~~~~H~~GTcrMG~--d~~sVVD~~~rV~Gv~nLrVvDaSv~P~~~~~np~~ti~aiaeraAd~I 531 (560)
T PRK02106 454 VQTDEEIDAFVREHAETAYHPSCTCKMGT--DPMAVVDPEGRVHGVEGLRVVDASIMPTITNGNLNAPTIMIAEKAADLI 531 (560)
T ss_pred cCCHHHHHHHHHhccCcCcccCCCeecCC--CCCeeECCCCEEeccCCeEEeeccccCCCCCcchHHHHHHHHHHHHHHH
Confidence 46788999999999889999999999994 7789999999999999999999999999999999999999999999999
Q ss_pred HHHhc
Q psy1205 856 KQQWI 860 (868)
Q Consensus 856 ~~~~~ 860 (868)
+++++
T Consensus 532 ~~~~~ 536 (560)
T PRK02106 532 RGRTP 536 (560)
T ss_pred hccCC
Confidence 99873
No 3
>TIGR01810 betA choline dehydrogenase. This enzyme is a member of the GMC oxidoreductase family (pfam00732 and pfam05199), sharing a common evoluntionary origin and enzymatic reaction with alcohol dehydrogenase. Outgrouping from this model, Caulobacter crescentus shares sequence homology with choline dehydrogenase, yet other genes participating in this enzymatic reaction have not currently been identified.
Probab=100.00 E-value=6.7e-80 Score=722.82 Aligned_cols=446 Identities=35% Similarity=0.595 Sum_probs=364.1
Q ss_pred CCCcceeechhHHhhhccccCChHHHHHHHH-cCCCCCChhchHHHHHHhccCCCCCCCCCCccCCCcceeeccCCCCCh
Q psy1205 385 CLLSPVLGGTSVLNGMMYIRGSRADYDNWAK-AGNPGWSYQDVLPYFLKSEDNQQATMMDQGFHGVGGYLTVTQFPYHPP 463 (868)
Q Consensus 385 ~l~G~~lGGsS~in~~~~~r~~~~df~~W~~-~G~~~Ws~~~l~pyy~k~e~~~~~~~~~~~~~g~~Gp~~~~~~~~~~~ 463 (868)
..+|++|||||+||+|+|+|+++.||+.|+. .|+++|+|++|+|||+|+|+.... +..+|+..||+.+...+...+
T Consensus 76 ~~~g~~lGGss~in~~~~~R~~~~d~~~w~~~~g~~~W~~~~l~py~~~~E~~~~~---~~~~~g~~G~~~v~~~~~~~~ 152 (532)
T TIGR01810 76 HARGKVLGGSSSINGMIYQRGNPMDYEKWAKPEGMESWDYADCLPYYKRLETTFGG---EKPYRGHDGPIKVRRGPADNP 152 (532)
T ss_pred eecccccCCCCCEeeeEEecCCHHHHHHHHHhcCCCCCCHHHHHHHHHHHhccCCC---CcccCCCCCCEEEecCCCCCH
Confidence 3456699999999999999999999999998 688999999999999999987653 235789999999987777778
Q ss_pred hHHHHHHHHHHCCCCC-CCCCCCCcceeeeeeccCCCCcccchhhhhhhhccCCCCeEEEccceEeEEEEcCCCCeEEEE
Q psy1205 464 LSHSILQGAMELGMPV-RDLNGVSHTGFMIAQTTTRNGSRLSTSKAFLRPIISRNNLHILLNTTVTRVIVDPLTKAAIGV 542 (868)
Q Consensus 464 ~~~~~~~a~~~lG~~~-~~~n~~~~~G~~~~~~~~~~g~R~s~~~~~L~~~~~~~nl~I~~~~~V~rIl~d~~~~~a~GV 542 (868)
..+.+.++++++|++. .+.++....|++.+...|.+|+|+++..+||.++.+++|++|+++++|+||+++ +++|+||
T Consensus 153 ~~~~~~~a~~~~G~~~~~~~~~~~~~g~~~~~~~~~~g~r~s~~~~~l~~a~~r~nl~i~~~~~V~rI~~~--~~ra~GV 230 (532)
T TIGR01810 153 LFQAFIEAGVEAGYNKTPDVNGFRQEGFGPMDSTVHNGRRVSAARAYLHPAMKRPNLEVQTRAFVTKINFE--GNRATGV 230 (532)
T ss_pred HHHHHHHHHHHcCCCccCCCCCCCccceEEEEEEcCCCEEEcHHHHHhhhhccCCCeEEEeCCEEEEEEec--CCeEEEE
Confidence 8899999999999998 677777777888887788999999999999999888999999999999999998 6799999
Q ss_pred EEEECCeEEEEEeccEEEEccCCcCchHHHHhcCCCChhhhhhcCCCcccCCCCCcccccccccceEEEEEcCCccccc-
Q psy1205 543 EFLTNGRLERLQAKNEVIVCAGAVDSPRILLLSGIGPREELRRLNIAPIHDLPGVGKNLHNHVAHFLNFFINDTDTTAL- 621 (868)
Q Consensus 543 ~~~~~g~~~~v~A~k~VILAAGai~SP~LLl~SGIGp~~~L~~~gI~~~~dlp~VG~nL~dH~~~~~~~~~~~~~~~~~- 621 (868)
++..++...++.++|+||||||+|+||+|||+|||||+++|+++||+++.|||+||+|||||+...+.+.++.+.....
T Consensus 231 ~~~~~~~~~~~~~ak~VIlaAGai~SP~LLl~SGIG~~~~L~~~gI~~~~~lp~VG~nL~DH~~~~~~~~~~~~~~~~~~ 310 (532)
T TIGR01810 231 EFKKGGRKEHTEANKEVILSAGAINSPQLLQLSGIGDAEHLRELGIEPRIHLPGVGENLQDHLEVYVQHACKQPVSLYPS 310 (532)
T ss_pred EEEeCCcEEEEEEeeeEEEccCCCCCHHHHHhcCCCCHHHHHhcCCCeEeeCCccccchhhcccceeEEEecCCcccccc
Confidence 9987766666667789999999999999999999999999999999999999999999999999888888765422111
Q ss_pred -----CHHHHHHHHHhCCCCCcCCCcceEEEEEecCCCCCCCCCCCeEEEeecccccccccCccccccCCCCCCCCCCCC
Q psy1205 622 -----NWATAMEYLLFRDGLMSGTGLSEVTGFVHSRLSNPAEDNPDLQIFFSGYLANCARTGQVGERSDGMNNSTPVPQR 696 (868)
Q Consensus 622 -----~~~~~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 696 (868)
......+|+..+.|++.... ....+|.... .....|++++.+.+..... .+.. . ....
T Consensus 311 ~~~~~~~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~---~~~~~p~~~~~~~~~~~~~-----~~~~---~-----~~~~ 373 (532)
T TIGR01810 311 LNWLKQPFIGAQWLFGRKGAGASNH-FEGGGFVRSN---DDVDYPNIQYHFLPVAIRY-----DGTK---A-----PKAH 373 (532)
T ss_pred cchhhhhHHHHHHHhcCCCCccccc-cceeEEEecC---CCCCCCCeEEEEEeeeecc-----CCCC---C-----CCCC
Confidence 01122356666777765432 2333455432 1123567665432211000 0000 0 0112
Q ss_pred eEEEEEeeeecCCCcEEEecCCCCCCCCeeccCCCCChhHHHHHHHHHHHHHHHHcchhHhhcCcccccCCCCCCCCCCC
Q psy1205 697 TISIFPTVLHPKSRGYLTLKDNNPQTPPLIFARYLTHPDDVKTLVDGIKIAIRLTQTAALQKYGFRIDTTPVKGCENLPF 776 (868)
Q Consensus 697 ~~~~~~~~~~P~s~G~V~L~s~d~~~~P~i~~~y~~~~~D~~~~~~~~~~~~~i~~~~~~~~~g~~~~~~p~~~~~~~~~ 776 (868)
.+.+...+++|.|||+|+|+++||++.|.|+++|+.++.|++.++++++.+++++++.+++.+..... .| ....
T Consensus 374 ~~~~~~~~~~P~srG~V~L~s~dp~~~P~i~~~y~~~~~D~~~~~~~~~~~~~i~~~~~~~~~~~~~~-~p-----~~~~ 447 (532)
T TIGR01810 374 GFQVHVGPMYSNSRGHVKIKSKDPFEKPEIVFNYMSHEEDWREFREAIRVTREILKQKALDPYRGGEI-SP-----GPEV 447 (532)
T ss_pred cEEEEEeecCCCCceEEEecCCCCccCceeccccCCCHHHHHHHHHHHHHHHHHHcCcchhhcccccc-CC-----CCCC
Confidence 35556678899999999999999999999999999999999999999999999999888877532211 11 1234
Q ss_pred CCHHHHHHHHHhccCCcccccccccccCCCCCCCccCCCCcEeccCCcEEeccCCCCCCCCccchHHHHHHHHHHHHHHH
Q psy1205 777 GCDAYWECAIRRNTGAENHQAGSCKMGPASDPSAVVSPELKVHGVDRLRVVDCSIMPAVTSGNTNAPAIMIAEKASDLIK 856 (868)
Q Consensus 777 ~sd~~~~~~i~~~~~t~~H~~GTcrMG~~~dp~~VVD~~lrV~Gv~nL~V~DaSv~P~~~~~NP~~Ti~alAeraAd~I~ 856 (868)
.+|++|++++|....+.+|++||||||+++++.||||++|||||++|||||||||||+++++||++|+||||||+||+|+
T Consensus 448 ~~d~~~~~~ir~~~~~~~H~~GTcrMG~~~~~~~VVD~~~rV~Gv~nLrVvDaSv~P~~~~~n~~~t~~aiaeraAd~I~ 527 (532)
T TIGR01810 448 QTDEEIDEFVRRHGETALHPCGTCKMGPASDEMSVVDPETRVHGMEGLRVVDASIMPRITNGNLNAPVIMMGEKAADIIR 527 (532)
T ss_pred CCHHHHHHHHhhhcccccccccceeCCCcccCCCccCCCCeEeccCCcEEeeeccCCCCCCCccHHHHHHHHHHHHHHHh
Confidence 68899999999999999999999999975567799999999999999999999999999999999999999999999999
Q ss_pred HH
Q psy1205 857 QQ 858 (868)
Q Consensus 857 ~~ 858 (868)
++
T Consensus 528 ~~ 529 (532)
T TIGR01810 528 GK 529 (532)
T ss_pred cc
Confidence 75
No 4
>PLN02785 Protein HOTHEAD
Probab=100.00 E-value=7.7e-74 Score=668.38 Aligned_cols=431 Identities=23% Similarity=0.330 Sum_probs=301.3
Q ss_pred CCcceeechhHHhhhccccCChHHHHHHHHcCCCCCChhchHHHHHHhccCCCCCCCCCCccCCCcceeeccCCCCChhH
Q psy1205 386 LLSPVLGGTSVLNGMMYIRGSRADYDNWAKAGNPGWSYQDVLPYFLKSEDNQQATMMDQGFHGVGGYLTVTQFPYHPPLS 465 (868)
Q Consensus 386 l~G~~lGGsS~in~~~~~r~~~~df~~W~~~G~~~Ws~~~l~pyy~k~e~~~~~~~~~~~~~g~~Gp~~~~~~~~~~~~~ 465 (868)
.+||+|||||+||+|+|.|+++.||+. .+|+|+++.+||++.|+... ..+...+..
T Consensus 126 ~rGr~LGGsS~iN~~~y~Rg~~~d~~~------~GW~~~~~~~~~~~~e~~~~------------------~~~~~~~~~ 181 (587)
T PLN02785 126 ARARVLGGGTCINAGFYSRASTRFIQK------AGWDAKLVNESYPWVERQIV------------------HWPKVAPWQ 181 (587)
T ss_pred cccceecchhhhcCeEEEeCCHHHhcc------CCCCcccccchHHHHhcccc------------------cCCCcChHH
Confidence 345699999999999999999999963 68999999999999997521 011235677
Q ss_pred HHHHHHHHHCCCCCCCCCCCC---cceeeeeecc-CCCCcccchhhhhhhhccCCCCeEEEccceEeEEEEcCCC--CeE
Q psy1205 466 HSILQGAMELGMPVRDLNGVS---HTGFMIAQTT-TRNGSRLSTSKAFLRPIISRNNLHILLNTTVTRVIVDPLT--KAA 539 (868)
Q Consensus 466 ~~~~~a~~~lG~~~~~~n~~~---~~G~~~~~~~-~~~g~R~s~~~~~L~~~~~~~nl~I~~~~~V~rIl~d~~~--~~a 539 (868)
..+++++.++|++. +|+.. ..|....... ...|.|.+++. ++ ++.+++|++|+++++|+||++++++ ++|
T Consensus 182 ~~~~~a~~e~G~~~--~n~~~~d~~~G~~~g~~i~~~~g~R~saa~-l~-~~~~~~nl~Vl~~a~V~rIl~~~~~~~~ra 257 (587)
T PLN02785 182 AALRDSLLEVGVSP--FNGFTYDHVYGTKVGGTIFDEFGRRHTAAE-LL-AAGNPNKLRVLLHATVQKIVFDTSGKRPRA 257 (587)
T ss_pred HHHHHHHHHcCCCc--cCCCCCCCccceeeeEEEeCCCCEEcCHHH-HH-hhcCCCCeEEEeCCEEEEEEEcCCCCCceE
Confidence 89999999999974 33211 1111111112 25688988776 44 5667899999999999999998532 489
Q ss_pred EEEEEEE-CCeEEEE----EeccEEEEccCCcCchHHHHhcCCCChhhhhhcCCCcccCCCCCcccccccccceEEEEEc
Q psy1205 540 IGVEFLT-NGRLERL----QAKNEVIVCAGAVDSPRILLLSGIGPREELRRLNIAPIHDLPGVGKNLHNHVAHFLNFFIN 614 (868)
Q Consensus 540 ~GV~~~~-~g~~~~v----~A~k~VILAAGai~SP~LLl~SGIGp~~~L~~~gI~~~~dlp~VG~nL~dH~~~~~~~~~~ 614 (868)
+||++.+ +|+.+++ +++||||||||+|+||+|||+|||||+++|+++||+++.|+|+||+||+||+...+.+..+
T Consensus 258 ~GV~~~~~~g~~~~~~~~~~~~~eVILsAGai~sP~lL~~SGIGp~~~L~~~gIpvv~dlP~VG~NL~DHp~~~i~~~~~ 337 (587)
T PLN02785 258 TGVIFKDENGNQHQAFLSNNKGSEIILSAGAIGSPQMLLLSGIGPKKELKKHKIPVVLHNEHVGKGMADNPMNSIFVPSK 337 (587)
T ss_pred EEEEEEECCCceEEEEeecccCceEEecccccCCHHHHHHcCCCCHHHHHHcCCCeeecCCCcccchhhCcccceEEEeC
Confidence 9999987 5665544 2568999999999999999999999999999999999999999999999999988877765
Q ss_pred CCcccccCHHHHHHHHHhCCCCCcCCCcceEEEEEecC--CC-CCCCCCCCeEEEeecccccccccCccccccCCCCCCC
Q psy1205 615 DTDTTALNWATAMEYLLFRDGLMSGTGLSEVTGFVHSR--LS-NPAEDNPDLQIFFSGYLANCARTGQVGERSDGMNNST 691 (868)
Q Consensus 615 ~~~~~~~~~~~~~~~~~~~~G~~~~~g~~~~~~~~~~~--~~-~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 691 (868)
.+... .....+.....|++..... ++.... .. ......+... .+............+...........
T Consensus 338 ~~~~~----~~~~~~~~~~~g~~~~~~~----~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 408 (587)
T PLN02785 338 APVEQ----SLIQTVGITKMGVYIEASS----GFGQSPDSIHCHHGIMSAEIG-QLSTIPPKQRTPEAIQAYIHRKKNLP 408 (587)
T ss_pred CCchh----hhHhhhhhhccccceeccc----ccccCchhhhhhccccccccc-cccccCcccccchhhhhhccCccccc
Confidence 43211 0111111222233211000 000000 00 0000000000 00000000000000000000000000
Q ss_pred CCCCCeEEEEEeeeecCCCcEEEecCCCCCCCCeeccCCCCChhHHHHHHHHHHHHHHHHcchhHhhcCcccccCCCC--
Q psy1205 692 PVPQRTISIFPTVLHPKSRGYLTLKDNNPQTPPLIFARYLTHPDDVKTLVDGIKIAIRLTQTAALQKYGFRIDTTPVK-- 769 (868)
Q Consensus 692 ~~~~~~~~~~~~~~~P~s~G~V~L~s~d~~~~P~i~~~y~~~~~D~~~~~~~~~~~~~i~~~~~~~~~g~~~~~~p~~-- 769 (868)
........+...+++|.|||+|+|+++||++.|.|++||+.+|.|++.++++++.+++++++++++.+..... .|..
T Consensus 409 ~~~~~~~~~~~~l~~P~SrG~V~L~ssdp~~~P~i~~ny~~~p~Dl~~~~~g~r~~~~i~~~~~~~~~~~~~~-~~~~~~ 487 (587)
T PLN02785 409 HEAFNGGFILEKIAGPISTGHLSLINTNVDDNPSVTFNYFKHPQDLQRCVYGIRTIEKIVKTNHFTNFTQCDK-QTMEKV 487 (587)
T ss_pred ccccccceEEEEecCCCcceEEEecCCCCCcCCccccccCCCHHHHHHHHHHHHHHHHHHcChhhhhhccccc-cccccc
Confidence 0000111234567899999999999999999999999999999999999999999999999999887652211 0100
Q ss_pred ----------CCCCCCCCCHHHHHHHHHhccCCcccccccccccCCCCCCCccCCCCcEeccCCcEEeccCCCCCCCCcc
Q psy1205 770 ----------GCENLPFGCDAYWECAIRRNTGAENHQAGSCKMGPASDPSAVVSPELKVHGVDRLRVVDCSIMPAVTSGN 839 (868)
Q Consensus 770 ----------~~~~~~~~sd~~~~~~i~~~~~t~~H~~GTcrMG~~~dp~~VVD~~lrV~Gv~nL~V~DaSv~P~~~~~N 839 (868)
.++. ...+|+.|++++|....+.+|++|||+|| +|||+++||||++|||||||||||.++++|
T Consensus 488 ~~~~~~~~~~~~p~-~~~~d~~l~~~ir~~~~t~~H~~GTc~MG------~VVD~~lrV~GV~~LRVvDaSi~P~~p~~n 560 (587)
T PLN02785 488 LNMSVKANINLIPK-HTNDTKSLEQFCKDTVITIWHYHGGCHVG------KVVDQNYKVLGVSRLRVIDGSTFDESPGTN 560 (587)
T ss_pred cccccccccccCCC-CCCCHHHHHHHHHHhcccccCCcccccCC------CeECCCCeEeccCCeEEeecccCCCCCCCc
Confidence 0011 12467899999999999999999999999 699999999999999999999999999999
Q ss_pred chHHHHHHHHHHHHHHHHHhcc
Q psy1205 840 TNAPAIMIAEKASDLIKQQWIG 861 (868)
Q Consensus 840 P~~Ti~alAeraAd~I~~~~~~ 861 (868)
|++|+||||||+||+|+++...
T Consensus 561 p~atv~miaer~A~~Il~~~~~ 582 (587)
T PLN02785 561 PQATVMMMGRYMGVKILRERLG 582 (587)
T ss_pred cHHHHHHHHHHHHHHHHHHhhh
Confidence 9999999999999999988644
No 5
>COG2303 BetA Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism]
Probab=100.00 E-value=1.5e-72 Score=654.42 Aligned_cols=517 Identities=38% Similarity=0.645 Sum_probs=417.8
Q ss_pred CCcceEEecCCCccceeecccccCCCceEEEecCCCCCCC-ccccchhhHhhhcC-CCCCCcccccCccccccCCCCccc
Q psy1205 138 RDYDFIVIGGGSSGAVVANRLSEVPNWRVLLIEAGGDEPT-GTQIPSMFLNFLGS-SIDYGYKTEPEDMACLNNEERRCN 215 (868)
Q Consensus 138 ~~~d~vi~g~G~~G~~~a~~ls~~~~~~v~l~~ag~~~~~-~v~~p~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 215 (868)
.++|+||||+|++|+.+|.+|| .++.+|+|+|+|+.... .+++|......+.. ..+|.+.++++... ....+.
T Consensus 6 ~~~D~vIVGsG~aG~~lA~rLs-~~g~~VllLEaG~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~----~~r~~~ 80 (542)
T COG2303 6 MEYDYVIVGSGSAGSVLAARLS-DAGLSVLVLEAGGPDRRPLIQMPAAYAFLMNGPRYDWGFRTEPEPHL----RGRELA 80 (542)
T ss_pred CCCCEEEECCCchhHHHHHHhc-CCCCeEEEEeCCCCCCccceecchhHhhhccCcccCCccccCcccCC----CCcccc
Confidence 4699999999999999999999 89999999999986333 67778777766665 66788877666521 233334
Q ss_pred cCCCCCCCcceEEEEecCCCCCCCCCCceecccCCCccccCCCCCcchhhhcccccccccCCCchhhhhcccccccccCc
Q psy1205 216 WPRGKVPNWRVLLIEAGGDEPTGTQIPSMFLNFLGSSIDYGYKTEPEDMACLNNEERRCNWPRGKCAIRRNTGAENHQAG 295 (868)
Q Consensus 216 ~~~g~~~~~~~~~~~~~~~~p~~~~~p~i~~~y~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~t~~H~~G 295 (868)
+++|+
T Consensus 81 ~~rgk--------------------------------------------------------------------------- 85 (542)
T COG2303 81 WPRGK--------------------------------------------------------------------------- 85 (542)
T ss_pred ccccC---------------------------------------------------------------------------
Confidence 44444
Q ss_pred CcccCCCCCCCCccCCCceeecccCeEEeecccCCccccCCCcchhhhhhhhhcccccchhhhhhhhhhccccCcccccc
Q psy1205 296 SCKMGPASDPSAVVSPELKVHGVDRLRVVDCSIMPAVTSGSAPLGGIQALRITRQDLVRWDQHLILALSCHRNSKSMVWT 375 (868)
Q Consensus 296 tc~mgp~~~~g~VVD~~lrV~Gv~~LRVvD~S~~p~~~~g~~~~g~~~a~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 375 (868)
T Consensus 86 -------------------------------------------------------------------------------- 85 (542)
T COG2303 86 -------------------------------------------------------------------------------- 85 (542)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccccccccCCCcceeechhHHhhhccccCChHHHHHHHHc-CCCCCChhchHHHHHHhccCCCCCCCC-CCccCCCcce
Q psy1205 376 GSVLWTAVSCLLSPVLGGTSVLNGMMYIRGSRADYDNWAKA-GNPGWSYQDVLPYFLKSEDNQQATMMD-QGFHGVGGYL 453 (868)
Q Consensus 376 ~~~~~~~~~~l~G~~lGGsS~in~~~~~r~~~~df~~W~~~-G~~~Ws~~~l~pyy~k~e~~~~~~~~~-~~~~g~~Gp~ 453 (868)
+|||+|+||+|+|+|+++.||+.|... |+++|+|+|++|||+++|++.+....+ ...|+..||+
T Consensus 86 --------------~lGGsS~ing~~~~R~~~~Df~~w~~~~G~~~W~y~d~lPyf~~aE~~~~~~g~~~~~~~g~~gp~ 151 (542)
T COG2303 86 --------------VLGGSSSINGMVYVRGHPEDFDAWAQESGAPGWPYDDVLPYFKRAEDLLGVGGQDLRTWHGGGGPL 151 (542)
T ss_pred --------------cccchhhhccceeecCCHHHHHHHHhhcCCCCCCccccHHHHHHHHhhcCCCCCCCCCCcCCCCCc
Confidence 999999999999999999999999875 779999999999999999987764433 4589999999
Q ss_pred eeccCCCCChhHHHHHHHHHHCCCCC-CCCCCCCcceeeeeeccCCCCcccchhhhhhhhccCCCCeEEEccceEeEEEE
Q psy1205 454 TVTQFPYHPPLSHSILQGAMELGMPV-RDLNGVSHTGFMIAQTTTRNGSRLSTSKAFLRPIISRNNLHILLNTTVTRVIV 532 (868)
Q Consensus 454 ~~~~~~~~~~~~~~~~~a~~~lG~~~-~~~n~~~~~G~~~~~~~~~~g~R~s~~~~~L~~~~~~~nl~I~~~~~V~rIl~ 532 (868)
.+.......++.+.+.++..++|++. .++|+....|++.++.++.+|.|+++..+||.++.+++|++|++++.|++|++
T Consensus 152 ~~~~~~~~~~~~~a~~~a~~~~G~~~~~~~~~~~~~g~g~~~~~~~~g~r~sa~~a~l~~a~~~~nl~v~t~a~v~ri~~ 231 (542)
T COG2303 152 PVSPPRSPNPIARAFIEAGEQLGFPTTPDPNGADQEGFGPYCVTICNGRRWSAARAYLKPALKRPNLTLLTGARVRRILL 231 (542)
T ss_pred cccCCCCchHHHHHHHHHHHHcCCCcCcccccCCCCCcccceeeccCCeEeechhhcchhHhcCCceEEecCCEEEEEEE
Confidence 99877666889999999999999999 77898888888888777669999999999999999999999999999999999
Q ss_pred cCCCCeEEEEEEEECCe--EEEEEeccEEEEccCCcCchHHHHhcCCCChhhhhhcCCCcccCCCCCcccccccccceEE
Q psy1205 533 DPLTKAAIGVEFLTNGR--LERLQAKNEVIVCAGAVDSPRILLLSGIGPREELRRLNIAPIHDLPGVGKNLHNHVAHFLN 610 (868)
Q Consensus 533 d~~~~~a~GV~~~~~g~--~~~v~A~k~VILAAGai~SP~LLl~SGIGp~~~L~~~gI~~~~dlp~VG~nL~dH~~~~~~ 610 (868)
+ +++++||++..++. .....+.++||||||+|+||+|||+||||++++|..+||+++.++|+||+|||||....+.
T Consensus 232 ~--~~r~~gv~~~~~~~~~~~~~~a~~~viL~AGai~Sp~LL~~Sgig~~~~~~~~g~~~v~~~~~vg~nl~dH~~~~~~ 309 (542)
T COG2303 232 E--GDRAVGVEVEIGDGGTIETAVAAREVVLAAGAINSPKLLLLSGIGPADHLLEHGIDVVGRLPGVGQNLQDHLEIYVA 309 (542)
T ss_pred E--CCeeEEEEEEeCCCCceEEEecCceEEEeccccCCHHHHHhcCCCchhhhhhcCCeeeecCcchhHHHHhhhhhhhh
Confidence 9 88999999987432 3555566799999999999999999999999999999999999999999999999998887
Q ss_pred EEEcCCcccc------cCHHHHHHHHHhCCCCCcCCCcceEEEEEecCCCCCCCCCCCeEEEeecccccccccCcccccc
Q psy1205 611 FFINDTDTTA------LNWATAMEYLLFRDGLMSGTGLSEVTGFVHSRLSNPAEDNPDLQIFFSGYLANCARTGQVGERS 684 (868)
Q Consensus 611 ~~~~~~~~~~------~~~~~~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~ 684 (868)
+......... ........|...+.|+...... +. +|..+. +....|++++++........
T Consensus 310 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~-~~-gf~~~~---~~~~~p~~~~~~~~~~~~~~--------- 375 (542)
T COG2303 310 FEATEPTNDSVLSLFSKLGIGADRYLLTRDGPGATNHF-EG-GFVRSG---PAGEYPDGQYHFAPLPLAIR--------- 375 (542)
T ss_pred eeccCccccccccccccccccceeEEeecCCCcccccc-cc-cccccC---ccccCCCccccccccccccc---------
Confidence 7766554110 0111123455556666543221 22 244332 33356777665543221100
Q ss_pred CCCCCCCCCCCCeEEEEEeeeecCCCcEEEecCCCCCCCCeeccCCCCChhHHHHHHHHHHHHHHHHcchhHhhcCcccc
Q psy1205 685 DGMNNSTPVPQRTISIFPTVLHPKSRGYLTLKDNNPQTPPLIFARYLTHPDDVKTLVDGIKIAIRLTQTAALQKYGFRID 764 (868)
Q Consensus 685 ~~~~~~~~~~~~~~~~~~~~~~P~s~G~V~L~s~d~~~~P~i~~~y~~~~~D~~~~~~~~~~~~~i~~~~~~~~~g~~~~ 764 (868)
.......+++.....+|.|+|.|.+++.||...|.|+++|..++.|++.+.++++..++++....+...-...
T Consensus 376 ------~~~~~~~~~~~~~~~rp~srg~v~~~~~d~~~~p~i~~~~~~~~~d~~~~~~~~~~~r~i~~~~~~~~~~~~e- 448 (542)
T COG2303 376 ------AAGAEHGFTLHVGPMRPKSRGSVTLRSPDPDNRPVIDPNYLSAEGDRAIFRAGIRLTREIIGQPALDARRKAE- 448 (542)
T ss_pred ------ccccCCccEEeeccCCCccccceecCCCCCcCCcccCccccCchhHHHHHHHHHHHHHHHhcCccchhhHHHh-
Confidence 0123456677788999999999999999999999999999999999999999999999998865555432221
Q ss_pred cCCCCCCCCCCCCCHHHHHHHHHhccCCcccccccccccCCCCCCCccC-CCCcEeccCCcEEeccCCCCCCCCccchHH
Q psy1205 765 TTPVKGCENLPFGCDAYWECAIRRNTGAENHQAGSCKMGPASDPSAVVS-PELKVHGVDRLRVVDCSIMPAVTSGNTNAP 843 (868)
Q Consensus 765 ~~p~~~~~~~~~~sd~~~~~~i~~~~~t~~H~~GTcrMG~~~dp~~VVD-~~lrV~Gv~nL~V~DaSv~P~~~~~NP~~T 843 (868)
..|. ....+++++..+++....+.+|++|||||| .||..||| ++|||||++||||+|||+||+++++||++|
T Consensus 449 ~~~~-----~~~~~~~~~~~~~~~~~~t~~H~~GT~rMG--~Dp~~~V~d~~lrv~g~~nL~VvDaSvmPt~~~~Np~~t 521 (542)
T COG2303 449 LAPG-----PRVTTDEDISAAIRFLARTAYHPMGTCRMG--SDPAAVVDDPYLRVHGLENLRVVDASVMPTSTGVNPNLT 521 (542)
T ss_pred hcCC-----CccccHHHHHHHHHhccCccccccccccCC--CCchhhccccccccccCCCeEEeCcccCcCccCCCccHh
Confidence 1222 234677889999999999999999999999 89985555 999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHH
Q psy1205 844 AIMIAEKASDLIKQQ 858 (868)
Q Consensus 844 i~alAeraAd~I~~~ 858 (868)
|+|||||+||+|+++
T Consensus 522 i~ala~raA~~I~~~ 536 (542)
T COG2303 522 IIALAERAADHILGD 536 (542)
T ss_pred HHHHHHHHHHHHhhc
Confidence 999999999999983
No 6
>TIGR02462 pyranose_ox pyranose oxidase. Pyranose oxidase (also called glucose 2-oxidase) converts D-glucose and molecular oxygen to 2-dehydro-D-glucose and hydrogen peroxide. Peroxide production is believed to be important to the wood rot fungi in which this enzyme is found for lignin degradation.
Probab=100.00 E-value=1e-48 Score=447.75 Aligned_cols=396 Identities=17% Similarity=0.195 Sum_probs=257.4
Q ss_pred eeechhHHhhhccccCChHHHHHHHHcCCCCC--ChhchHHHHHHhccCCCCCCCCCCccCCCcceeeccCCC-CChhHH
Q psy1205 390 VLGGTSVLNGMMYIRGSRADYDNWAKAGNPGW--SYQDVLPYFLKSEDNQQATMMDQGFHGVGGYLTVTQFPY-HPPLSH 466 (868)
Q Consensus 390 ~lGGsS~in~~~~~r~~~~df~~W~~~G~~~W--s~~~l~pyy~k~e~~~~~~~~~~~~~g~~Gp~~~~~~~~-~~~~~~ 466 (868)
.|||+|++|++.+.|+++++. ...+ .|| +|+||+|||+++|+++++.... + ..+. .....+
T Consensus 116 ~vGGsS~hW~g~~~R~~p~~r---~g~~-~dWPI~y~eL~PyY~~Ae~~~gv~g~~--~----------~~~~~~~~~~~ 179 (544)
T TIGR02462 116 GVGGMSTHWTCATPRFHREER---PKLS-DDAAEDDAEWDRLYTKAESLIGTSTDQ--F----------DESIRHNLVLR 179 (544)
T ss_pred ccCchhhhcCcccCCCCHHhc---cCCC-CCCCCCHHHHHHHHHHHHHHhCCCCCc--C----------CCcccchhHHH
Confidence 899999999999999999642 1223 689 9999999999999998765310 0 0011 111222
Q ss_pred HHHHHHHHCCC-CCCCCCCCCcceeeeeeccCCCCcccchhhhhhhhcc----CCCCeEEEccceEeEEEEcCCC-CeEE
Q psy1205 467 SILQGAMELGM-PVRDLNGVSHTGFMIAQTTTRNGSRLSTSKAFLRPII----SRNNLHILLNTTVTRVIVDPLT-KAAI 540 (868)
Q Consensus 467 ~~~~a~~~lG~-~~~~~n~~~~~G~~~~~~~~~~g~R~s~~~~~L~~~~----~~~nl~I~~~~~V~rIl~d~~~-~~a~ 540 (868)
.+.++++ |. ..... .-. +. ..+|..+.|+++..+.+..+. +++|++|++++.|++|++|+++ ++|+
T Consensus 180 ~~~~~~~--g~~~~~~~--PlA--~~--~~~c~~~ak~s~~~t~~~~~~~~~~~~~n~~l~~~a~v~~i~~d~~~~~~v~ 251 (544)
T TIGR02462 180 KLQDEYK--GQRDFQPL--PLA--CH--RRTDPTYVEWHSADTVFDLQPNDDAPSERFTLLTNHRCTRLVRNETNESEIE 251 (544)
T ss_pred HHHHHhc--cccccccC--chh--hh--ccCCCccceecCCccchhhhhhhhccCCCEEEEcCCEEEEEEeCCCCCceeE
Confidence 2333322 33 11110 001 11 115667888887656665554 4889999999999999998654 6899
Q ss_pred EEEEEE--CCeEEEEEeccEEEEccCCcCchHHHHhcCCCChhhhhhcCCCcccCCCCCcccccccccceEEEEEcCCcc
Q psy1205 541 GVEFLT--NGRLERLQAKNEVIVCAGAVDSPRILLLSGIGPREELRRLNIAPIHDLPGVGKNLHNHVAHFLNFFINDTDT 618 (868)
Q Consensus 541 GV~~~~--~g~~~~v~A~k~VILAAGai~SP~LLl~SGIGp~~~L~~~gI~~~~dlp~VG~nL~dH~~~~~~~~~~~~~~ 618 (868)
+|+|.+ +++.++++|+ .||||||+|+||||||+|+++... ...|+.+....+.||||||||+...+...++++..
T Consensus 252 ~v~~~d~~~g~~~~v~A~-~vVLAagaIetpRLLL~S~~~~~~--~p~gl~Nss~~g~VGRnlmdh~~~~~~~~~~~~~~ 328 (544)
T TIGR02462 252 AALVRDLLSGDRFEIKAD-VYVLACGAVHNPQILVNSGFGQLG--RPDPTNPPPLLPSLGRYITEQSMTFCQIVLSTELV 328 (544)
T ss_pred EEEEEECCCCcEEEEECC-EEEEccCchhhHHHHHhCCCCCCc--CCCCcCCCCCCCCCCcchhcCCCccEEEEecchhh
Confidence 999987 6888999996 899999999999999999997532 24455554323569999999998877776654421
Q ss_pred cccCHHHHHHHHHhCCCCCcCCCcceEEEEEecC-------CC-C----CCC-CCCCeEEEee-c--cccccccc-Cccc
Q psy1205 619 TALNWATAMEYLLFRDGLMSGTGLSEVTGFVHSR-------LS-N----PAE-DNPDLQIFFS-G--YLANCART-GQVG 681 (868)
Q Consensus 619 ~~~~~~~~~~~~~~~~G~~~~~g~~~~~~~~~~~-------~~-~----~~~-~~p~~~~~~~-~--~~~~~~~~-~~~~ 681 (868)
.. + .++.. ...|+... +. . +.. ..|....-+. . |....... ..++
T Consensus 329 ~~--------~----~~~~~------~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~g 390 (544)
T TIGR02462 329 DS--------V----RSDPR------GLDWWKEKVANHMMKHPEDPLPIPFRDPEPQVTTPFTEEHPWHTQIHRDAFSYG 390 (544)
T ss_pred hh--------c----cCCcc------ccccccccchhhhccccCCcccccccccCcccccccccccccchhhhhhhhhcc
Confidence 00 0 01000 00000000 00 0 000 0000000000 0 00000000 0001
Q ss_pred cccCCCCCCCCCCCCeEEE-EEeeeecCCCcEEEecC--CCCCCCCeeccCCCCChhHHHHHHHHHHHHHHHHcchhHhh
Q psy1205 682 ERSDGMNNSTPVPQRTISI-FPTVLHPKSRGYLTLKD--NNPQTPPLIFARYLTHPDDVKTLVDGIKIAIRLTQTAALQK 758 (868)
Q Consensus 682 ~~~~~~~~~~~~~~~~~~~-~~~~~~P~s~G~V~L~s--~d~~~~P~i~~~y~~~~~D~~~~~~~~~~~~~i~~~~~~~~ 758 (868)
...... .....+.+ ...+..|..+++|+|++ +|.++.|++.++|..++.|++.+.++.+.+.++++ .
T Consensus 391 ~~~~~~-----~~~~~v~l~~~~e~lP~~~NrV~Ld~~~~D~~G~P~~~i~~~~~~~d~~~~~~~~~~~~~i~~-----~ 460 (544)
T TIGR02462 391 AVGPSI-----DSRVIVDLRFFGRTEPKEENKLVFQDKVTDTYNMPQPTFDFRFSAADSKRARRMMTDMCNVAA-----K 460 (544)
T ss_pred cccccc-----cccceeeEEEEeccCCCCCCeEEcCCCCcCCCCCeeEEEEEeCCHHHHHHHHHHHHHHHHHHH-----H
Confidence 000000 00112222 34577899999999975 69999999999999999999999999999988854 4
Q ss_pred cCcccccCCCCCCCCCCCCCHHHHHHHHHhccCCcccccccccccCCCCCC-CccCCCCcEeccCCcEEeccCCCCCCCC
Q psy1205 759 YGFRIDTTPVKGCENLPFGCDAYWECAIRRNTGAENHQAGSCKMGPASDPS-AVVSPELKVHGVDRLRVVDCSIMPAVTS 837 (868)
Q Consensus 759 ~g~~~~~~p~~~~~~~~~~sd~~~~~~i~~~~~t~~H~~GTcrMG~~~dp~-~VVD~~lrV~Gv~nL~V~DaSv~P~~~~ 837 (868)
+|....... + . + .....+.|++|||||| .||. +|||+++||||++||||+|+|+||+.++
T Consensus 461 ~G~~~~~~~-~----------~-~-----~~~~~~~H~~Gt~rMG--~dp~~sVvd~~~rv~g~~NL~V~d~s~~Pt~~~ 521 (544)
T TIGR02462 461 IGGYLPGSL-P----------Q-F-----MEPGLALHLAGTTRIG--FDEQTTVANTDSKVHNFKNLYVGGNGNIPTAFG 521 (544)
T ss_pred cCCCccccc-c----------c-c-----cCCCccccCCCCeecC--CCCCCceECCCCcEeCCCCeEEeccCcCCCCCC
Confidence 443211000 0 0 0 0123578999999999 4565 9999999999999999999999999999
Q ss_pred ccchHHHHHHHHHHHHHHHHHh
Q psy1205 838 GNTNAPAIMIAEKASDLIKQQW 859 (868)
Q Consensus 838 ~NP~~Ti~alAeraAd~I~~~~ 859 (868)
+||++|+||+|+|+||+|++++
T Consensus 522 ~nPtlTi~ala~r~a~~i~~~~ 543 (544)
T TIGR02462 522 ANPTLTSMCYAIKSAEYIINNF 543 (544)
T ss_pred CCcHHHHHHHHHHHHHHHHHhc
Confidence 9999999999999999999876
No 7
>PF00732 GMC_oxred_N: GMC oxidoreductase; InterPro: IPR000172 The glucose-methanol-choline (GMC) oxidoreductases are FAD flavoproteins oxidoreductases [, ]. These enzymes include a variety of proteins; choline dehydrogenase (CHD), methanol oxidase (MOX) and cellobiose dehydrogenase (1.1.99.18 from EC) [] which share a number of regions of sequence similarities. One of these regions, located in the N-terminal section, corresponds to the FAD ADP- binding domain. The function of the other conserved domains is not yet known.; GO: 0016614 oxidoreductase activity, acting on CH-OH group of donors, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 3Q9T_B 1B4V_A 3GYJ_A 1CBO_A 1B8S_A 1N4V_A 1N4W_A 3CNJ_A 1IJH_A 2GEW_A ....
Probab=100.00 E-value=4.2e-47 Score=414.02 Aligned_cols=216 Identities=43% Similarity=0.772 Sum_probs=181.7
Q ss_pred CCcceeechhHHhhhccccCChHHHHHHHHc-CCCCCChhchHHHHHHhccCCCCCCCCCCccCCCcceee-ccCCCCCh
Q psy1205 386 LLSPVLGGTSVLNGMMYIRGSRADYDNWAKA-GNPGWSYQDVLPYFLKSEDNQQATMMDQGFHGVGGYLTV-TQFPYHPP 463 (868)
Q Consensus 386 l~G~~lGGsS~in~~~~~r~~~~df~~W~~~-G~~~Ws~~~l~pyy~k~e~~~~~~~~~~~~~g~~Gp~~~-~~~~~~~~ 463 (868)
.+|++|||+|+||+|++.|+++.||+.|... |.++|+|++++|||+++|+...+. .+.|+..+++.+ .......+
T Consensus 75 ~~G~~lGGsS~in~~~~~R~~~~df~~w~~~~g~~~w~~~~l~~~~~~~e~~~~~~---~~~~g~~~~~~v~~~~~~~~~ 151 (296)
T PF00732_consen 75 PRGKGLGGSSAINGGVYFRPSPSDFDEWAREFGADGWSWDDLEPYYDKAETFLGPS---SDLHGVDGPLPVSSSPPYPSP 151 (296)
T ss_dssp EEB-STTGGGGTS--BE-B--HHHHHHHHHTTTCTTGSHHHHHHHHHHHEEEHTTB---GGGSCBSSSEEEHHHCSCHCT
T ss_pred ecceecCCcccccccccccCCcccchhhhhcccccccchhhHHHHHHHHHhhcccc---ccccccccccccccccCCCCH
Confidence 3677999999999999999999999999986 788899999999999999887654 567888899998 44555677
Q ss_pred hHHHHHHHHHHCCCCC-CCCCCCCcceeeeeeccCCCCcccchhhhhhhhccCCCCeEEEccceEeEEEEcCCCCeEEEE
Q psy1205 464 LSHSILQGAMELGMPV-RDLNGVSHTGFMIAQTTTRNGSRLSTSKAFLRPIISRNNLHILLNTTVTRVIVDPLTKAAIGV 542 (868)
Q Consensus 464 ~~~~~~~a~~~lG~~~-~~~n~~~~~G~~~~~~~~~~g~R~s~~~~~L~~~~~~~nl~I~~~~~V~rIl~d~~~~~a~GV 542 (868)
....+.++++++|++. .+.+.+..+|++.....|++|+|+++..+||.++.+++|++|+++++|+||+++.++++|+||
T Consensus 152 ~~~~~~~a~~~~G~~~~~~~~~~~~~g~~~~~~~~~~g~r~s~~~~~L~~a~~~~n~~l~~~~~V~~i~~~~~~~~a~gV 231 (296)
T PF00732_consen 152 MNQALMDAAEELGIPVPQDFNGCDPCGFCMTGFNCPNGARSSAATTYLPPALKRPNLTLLTNARVTRIIFDGDGGRATGV 231 (296)
T ss_dssp HHHHHHHHHHHTTHHBCSCTTSSTCSEEEECEECECTTCBBHHHHHHHHHHTTTTTEEEEESEEEEEEEEETTSTEEEEE
T ss_pred HHHHHHHHHHHcCCccccccccccccccccccccccchhceehhhcccchhhccCCccEEcCcEEEEEeeeccccceeee
Confidence 8899999999999995 677777778877665579999999999999999999999999999999999998778999999
Q ss_pred EEEEC-Ce-EEEEEeccEEEEccCCcCchHHHHhcCCCChhhhhhcCCCcccCCCCCcccccccc
Q psy1205 543 EFLTN-GR-LERLQAKNEVIVCAGAVDSPRILLLSGIGPREELRRLNIAPIHDLPGVGKNLHNHV 605 (868)
Q Consensus 543 ~~~~~-g~-~~~v~A~k~VILAAGai~SP~LLl~SGIGp~~~L~~~gI~~~~dlp~VG~nL~dH~ 605 (868)
++.+. +. .+.+.++|+||||||||+||+|||+|||||+++|+++||+++.|+| ||+|||||+
T Consensus 232 ~~~~~~~~~~~~~~~ak~VIlaAGai~Tp~LLl~SGiG~~~~L~~~gi~~~~~lp-VG~nl~dH~ 295 (296)
T PF00732_consen 232 EYVDNDGGVQRRIVAAKEVILAAGAIGTPRLLLRSGIGPKDHLDALGIPVVVDLP-VGRNLQDHP 295 (296)
T ss_dssp EEEETTTSEEEEEEEEEEEEE-SHHHHHHHHHHHTTEE-HHHHHHTTHHHSEE-T-TTECEB--E
T ss_pred eeeecCCcceeeeccceeEEeccCCCCChhhhcccccccHHHHHHcCCCceeeCc-chhchhccc
Confidence 99983 33 3555555799999999999999999999999999999999999999 999999997
No 8
>KOG1238|consensus
Probab=99.98 E-value=8.3e-33 Score=310.37 Aligned_cols=125 Identities=30% Similarity=0.404 Sum_probs=103.5
Q ss_pred CCcceEEEEecCCCCCCCCCCceecccCCCccc----------------------cCCCCCcchhhhcccccccccCCCc
Q psy1205 222 PNWRVLLIEAGGDEPTGTQIPSMFLNFLGSSID----------------------YGYKTEPEDMACLNNEERRCNWPRG 279 (868)
Q Consensus 222 ~~~~~~~~~~~~~~p~~~~~p~i~~~y~~~~~d----------------------~~~~~~~~~~~~~~~~~~~~~~~~~ 279 (868)
.|.|.+.+.+.+.|| .++|.|+|||+.+|.| +++.......+.|.... ......|
T Consensus 463 ~P~SrG~l~L~s~nP--~~~P~I~~NY~~~p~Dv~~~vegi~~~~~l~~s~af~~~~~r~~~~~~~~c~~~~-~~sd~yw 539 (623)
T KOG1238|consen 463 RPKSRGRLKLRSTNP--RDNPLITPNYFTHPEDVATLVEGIRTIIRLSNSKAFQRFGARLWKKPVPGCDLLA-FLSDAYW 539 (623)
T ss_pred CCCccceEEecCCCC--CcCceeccCcCCCHHHHHHHHHHHHHHHHHHcCHHHHHhcchhccccCCCccccc-CCCHHHH
Confidence 678999999999999 9999999999999999 22222233334444433 2334568
Q ss_pred hhhhhcccccccccCcCcccCCCCCCCCccCCCceeecccCeEEeecccCCccccCCCc-chhhhhhhhhc
Q psy1205 280 KCAIRRNTGAENHQAGSCKMGPASDPSAVVSPELKVHGVDRLRVVDCSIMPAVTSGSAP-LGGIQALRITR 349 (868)
Q Consensus 280 ~~~~r~~~~t~~H~~Gtc~mgp~~~~g~VVD~~lrV~Gv~~LRVvD~S~~p~~~~g~~~-~g~~~a~~~~~ 349 (868)
+||||+++.|+|||||||+|||+.|+.+|||++||||||+|||||||||||.+|+||.- +..+.|.+.|+
T Consensus 540 ~c~~R~~~~TiyH~~GtckMGp~~D~~aVVD~~lrV~Gv~~LRVVDaSimP~~psgN~nA~v~MIgek~ad 610 (623)
T KOG1238|consen 540 ECFCRHTVVTIYHYSGTCKMGPSSDPTAVVDPQLRVHGVRGLRVVDASIMPESPSGNPNAPVMMIGEKAAD 610 (623)
T ss_pred HHHHHhccceeeccCCceEeCCccCCCcccCCcceeccccCceEeeccccCCCCCCCccHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999954 44557777664
No 9
>PF05199 GMC_oxred_C: GMC oxidoreductase; InterPro: IPR007867 The glucose-methanol-choline (GMC) oxidoreductases are FAD flavoproteins oxidoreductases [, ]. These enzymes include a variety of proteins; choline dehydrogenase (CHD), methanol oxidase (MOX) and cellobiose dehydrogenase (1.1.99.18 from EC) [] which share a number of regions of sequence similarities. The function of this C-terminal conserved domain is not yet known.; GO: 0016614 oxidoreductase activity, acting on CH-OH group of donors, 0055114 oxidation-reduction process; PDB: 3BG7_F 2IGM_D 3BLY_A 3BG6_H 3LSK_A 2IGO_A 3K4B_A 3K4L_B 2IGN_B 3K4M_H ....
Probab=99.97 E-value=4.8e-32 Score=262.64 Aligned_cols=143 Identities=40% Similarity=0.703 Sum_probs=117.3
Q ss_pred cCCCcEEEecCCCCCCCCeeccCCCCChhHHHHHHHHHHHHHHHHcchhHhhcCccc-ccCCCCCCCCCCCCCHHHHHHH
Q psy1205 707 PKSRGYLTLKDNNPQTPPLIFARYLTHPDDVKTLVDGIKIAIRLTQTAALQKYGFRI-DTTPVKGCENLPFGCDAYWECA 785 (868)
Q Consensus 707 P~s~G~V~L~s~d~~~~P~i~~~y~~~~~D~~~~~~~~~~~~~i~~~~~~~~~g~~~-~~~p~~~~~~~~~~sd~~~~~~ 785 (868)
|+|+|+|+|+++||++.|.|+++|+.++.|++.+.++++.+++++++. +++++... .+.+...|......++++|+++
T Consensus 1 P~S~G~V~L~~~d~~~~p~i~~~y~~~~~D~~~~~~~~~~~~~i~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (144)
T PF05199_consen 1 PKSRGRVTLDSSDPFGQPLIDPNYLSDPRDLEALREGIKRARRILRAA-FEEIGAGELLPGPSPFCPDASLDSDEDLECY 79 (144)
T ss_dssp -SS-BEEEESSSSTTSEEEEE--TTSSHHHHHHHHHHHHHHHHHHTSG-GGGTEEEEEESCGCSCCGCSTTTCHHHHHHH
T ss_pred CCCCcEEEeCCCCCCCCcEEEeCCCCCHHHHHHHHHHHHHHHHHHhhh-hcccccccccccccccccccccccchhhhhh
Confidence 799999999999999999999999999999999999999999999988 77764322 2223334455566788999999
Q ss_pred HHhccCCcccccccccccCCCCCCCccCCCCcEeccCCcEEeccCCCCCCCCccchHHHHHHHHHH
Q psy1205 786 IRRNTGAENHQAGSCKMGPASDPSAVVSPELKVHGVDRLRVVDCSIMPAVTSGNTNAPAIMIAEKA 851 (868)
Q Consensus 786 i~~~~~t~~H~~GTcrMG~~~dp~~VVD~~lrV~Gv~nL~V~DaSv~P~~~~~NP~~Ti~alAera 851 (868)
++....+.+|++||||||++.+. +|||++|||||++||||+|||+||+.+++||++|+|||||||
T Consensus 80 ~~~~~~~~~H~~Gt~~mG~~~~~-~VvD~~~rv~g~~nL~V~DaSv~P~~~~~np~~t~~ala~ra 144 (144)
T PF05199_consen 80 IRQNVGTSWHPSGTCRMGPDPDT-SVVDPDLRVHGVRNLRVADASVFPTSPGANPTLTIMALAERA 144 (144)
T ss_dssp HHHHGEECSS-BETT-BTSSTTT-TSB-TTSBBTTSBSEEE-SGGGSSS-SSSSSHHHHHHHHHHH
T ss_pred eeeccceecccccceeccccCCc-eeECCCCCeeeeeeEEECCCCcCCCCCCcCcHHHHHHHeeCC
Confidence 99999999999999999953333 999999999999999999999999999999999999999996
No 10
>TIGR01810 betA choline dehydrogenase. This enzyme is a member of the GMC oxidoreductase family (pfam00732 and pfam05199), sharing a common evoluntionary origin and enzymatic reaction with alcohol dehydrogenase. Outgrouping from this model, Caulobacter crescentus shares sequence homology with choline dehydrogenase, yet other genes participating in this enzymatic reaction have not currently been identified.
Probab=99.97 E-value=5.3e-32 Score=317.92 Aligned_cols=127 Identities=28% Similarity=0.395 Sum_probs=96.7
Q ss_pred CCcceEEEEecCCCCCCCCCCceecccCCCccccCCCCCc-----chh-----hhc-----ccccccccCCCchhhhhcc
Q psy1205 222 PNWRVLLIEAGGDEPTGTQIPSMFLNFLGSSIDYGYKTEP-----EDM-----ACL-----NNEERRCNWPRGKCAIRRN 286 (868)
Q Consensus 222 ~~~~~~~~~~~~~~p~~~~~p~i~~~y~~~~~d~~~~~~~-----~~~-----~~~-----~~~~~~~~~~~~~~~~r~~ 286 (868)
.+.+.+.+++.+.|| .+.|.|++||+.++.|....... +.+ ... ...........+++|+|++
T Consensus 383 ~P~srG~V~L~s~dp--~~~P~i~~~y~~~~~D~~~~~~~~~~~~~i~~~~~~~~~~~~~~~p~~~~~~d~~~~~~ir~~ 460 (532)
T TIGR01810 383 YSNSRGHVKIKSKDP--FEKPEIVFNYMSHEEDWREFREAIRVTREILKQKALDPYRGGEISPGPEVQTDEEIDEFVRRH 460 (532)
T ss_pred CCCCceEEEecCCCC--ccCceeccccCCCHHHHHHHHHHHHHHHHHHcCcchhhccccccCCCCCCCCHHHHHHHHhhh
Confidence 456778888888888 89999999999999992211111 000 000 0000011122458999999
Q ss_pred cccccccCcCcccCCCCCCCCccCCCceeecccCeEEeecccCCccccCC-Ccchhhhhhhhhcc
Q psy1205 287 TGAENHQAGSCKMGPASDPSAVVSPELKVHGVDRLRVVDCSIMPAVTSGS-APLGGIQALRITRQ 350 (868)
Q Consensus 287 ~~t~~H~~Gtc~mgp~~~~g~VVD~~lrV~Gv~~LRVvD~S~~p~~~~g~-~~~g~~~a~~~~~~ 350 (868)
+.|.||++|||+||+..++++|||+++|||||+||||||+||||.+|+|| .++..+.|.|+|+.
T Consensus 461 ~~~~~H~~GTcrMG~~~~~~~VVD~~~rV~Gv~nLrVvDaSv~P~~~~~n~~~t~~aiaeraAd~ 525 (532)
T TIGR01810 461 GETALHPCGTCKMGPASDEMSVVDPETRVHGMEGLRVVDASIMPRITNGNLNAPVIMMGEKAADI 525 (532)
T ss_pred cccccccccceeCCCcccCCCccCCCCeEeccCCcEEeeeccCCCCCCCccHHHHHHHHHHHHHH
Confidence 99999999999999867889999999999999999999999999999999 66667788888753
No 11
>PRK02106 choline dehydrogenase; Validated
Probab=99.97 E-value=4.3e-31 Score=311.83 Aligned_cols=126 Identities=30% Similarity=0.417 Sum_probs=95.4
Q ss_pred CCcceEEEEecCCCCCCCCCCceecccCCCccccCCCCC-----cchhh--hcccc--cc------cccCCCchhhhhcc
Q psy1205 222 PNWRVLLIEAGGDEPTGTQIPSMFLNFLGSSIDYGYKTE-----PEDMA--CLNNE--ER------RCNWPRGKCAIRRN 286 (868)
Q Consensus 222 ~~~~~~~~~~~~~~p~~~~~p~i~~~y~~~~~d~~~~~~-----~~~~~--~~~~~--~~------~~~~~~~~~~~r~~ 286 (868)
.+.+.+.|++.+.|| .+.|.|+++|+.++.|...... .+.+. .+... .+ ......+++|+|+.
T Consensus 390 ~P~srG~V~L~s~d~--~~~P~i~~~y~~~~~D~~~~~~~~~~~~~i~~~~~~~~~~~~~~~p~~~~~~~~~~~~~i~~~ 467 (560)
T PRK02106 390 RSPSRGSVKLKSADP--RAHPSILFNYMSTEQDWREFRDAIRLTREIMAQPALDPYRGREISPGADVQTDEEIDAFVREH 467 (560)
T ss_pred CCcceEEEEEeCCCC--ccCceEccccCCCHHHHHHHHHHHHHHHHHHcChhhhhccccccCCCcccCCHHHHHHHHHhc
Confidence 456777788877788 7899999999999999221111 00000 00000 00 01112357899999
Q ss_pred cccccccCcCcccCCCCCCCCccCCCceeecccCeEEeecccCCccccCC-Ccchhhhhhhhhccc
Q psy1205 287 TGAENHQAGSCKMGPASDPSAVVSPELKVHGVDRLRVVDCSIMPAVTSGS-APLGGIQALRITRQD 351 (868)
Q Consensus 287 ~~t~~H~~Gtc~mgp~~~~g~VVD~~lrV~Gv~~LRVvD~S~~p~~~~g~-~~~g~~~a~~~~~~g 351 (868)
..|.||++|||+||+ |+++|||+++|||||+||||||+||||.++++| .++..+.|.|+|+.=
T Consensus 468 ~~~~~H~~GTcrMG~--d~~sVVD~~~rV~Gv~nLrVvDaSv~P~~~~~np~~ti~aiaeraAd~I 531 (560)
T PRK02106 468 AETAYHPSCTCKMGT--DPMAVVDPEGRVHGVEGLRVVDASIMPTITNGNLNAPTIMIAEKAADLI 531 (560)
T ss_pred cCcCcccCCCeecCC--CCCeeECCCCEEeccCCeEEeeccccCCCCCcchHHHHHHHHHHHHHHH
Confidence 999999999999995 779999999999999999999999999999999 888888999998643
No 12
>COG2303 BetA Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism]
Probab=99.94 E-value=1.4e-27 Score=278.05 Aligned_cols=125 Identities=28% Similarity=0.302 Sum_probs=92.8
Q ss_pred CCcceEEEEecCCCCCCCCCCceecccCCCccccCCCCCcchhhhccc---------ccccccC------CCchhhhhcc
Q psy1205 222 PNWRVLLIEAGGDEPTGTQIPSMFLNFLGSSIDYGYKTEPEDMACLNN---------EERRCNW------PRGKCAIRRN 286 (868)
Q Consensus 222 ~~~~~~~~~~~~~~p~~~~~p~i~~~y~~~~~d~~~~~~~~~~~~~~~---------~~~~~~~------~~~~~~~r~~ 286 (868)
.+.+.+.+.+.+.+| .+.|.|++||.+++.|+.............. ..+.... ..-..|++..
T Consensus 391 rp~srg~v~~~~~d~--~~~p~i~~~~~~~~~d~~~~~~~~~~~r~i~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~ 468 (542)
T COG2303 391 RPKSRGSVTLRSPDP--DNRPVIDPNYLSAEGDRAIFRAGIRLTREIIGQPALDARRKAELAPGPRVTTDEDISAAIRFL 468 (542)
T ss_pred CCccccceecCCCCC--cCCcccCccccCchhHHHHHHHHHHHHHHHhcCccchhhHHHhhcCCCccccHHHHHHHHHhc
Confidence 345666677777777 8889999999999887222221111110000 0001111 1126789999
Q ss_pred cccccccCcCcccCCCCCCCCccC-CCceeecccCeEEeecccCCccccCC-Ccchhhhhhhhhcc
Q psy1205 287 TGAENHQAGSCKMGPASDPSAVVS-PELKVHGVDRLRVVDCSIMPAVTSGS-APLGGIQALRITRQ 350 (868)
Q Consensus 287 ~~t~~H~~Gtc~mgp~~~~g~VVD-~~lrV~Gv~~LRVvD~S~~p~~~~g~-~~~g~~~a~~~~~~ 350 (868)
..|.+|++|||+|| .|+..||| +++||||++||||+|+|+||.++++| .++.++.|.|+|+.
T Consensus 469 ~~t~~H~~GT~rMG--~Dp~~~V~d~~lrv~g~~nL~VvDaSvmPt~~~~Np~~ti~ala~raA~~ 532 (542)
T COG2303 469 ARTAYHPMGTCRMG--SDPAAVVDDPYLRVHGLENLRVVDASVMPTSTGVNPNLTIIALAERAADH 532 (542)
T ss_pred cCccccccccccCC--CCchhhccccccccccCCCeEEeCcccCcCccCCCccHhHHHHHHHHHHH
Confidence 99999999999999 88887777 99999999999999999999999999 88899999999854
No 13
>PLN02785 Protein HOTHEAD
Probab=99.81 E-value=1.7e-20 Score=219.98 Aligned_cols=121 Identities=17% Similarity=0.140 Sum_probs=93.4
Q ss_pred CCcceEEEEecCCCCCCCCCCceecccCCCcccc-------------------CCCCCcchhhh--c----c-----ccc
Q psy1205 222 PNWRVLLIEAGGDEPTGTQIPSMFLNFLGSSIDY-------------------GYKTEPEDMAC--L----N-----NEE 271 (868)
Q Consensus 222 ~~~~~~~~~~~~~~p~~~~~p~i~~~y~~~~~d~-------------------~~~~~~~~~~~--~----~-----~~~ 271 (868)
.|.+.++|++.+.|| .++|.|++||+.++.|. .-+...+..+. + + ...
T Consensus 423 ~P~SrG~V~L~ssdp--~~~P~i~~ny~~~p~Dl~~~~~g~r~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 500 (587)
T PLN02785 423 GPISTGHLSLINTNV--DDNPSVTFNYFKHPQDLQRCVYGIRTIEKIVKTNHFTNFTQCDKQTMEKVLNMSVKANINLIP 500 (587)
T ss_pred CCCcceEEEecCCCC--CcCCccccccCCCHHHHHHHHHHHHHHHHHHcChhhhhhccccccccccccccccccccccCC
Confidence 578889999999999 89999999999999991 11110111000 0 0 000
Q ss_pred c-cccCCCchhhhhcccccccccCcCcccCCCCCCCCccCCCceeecccCeEEeecccCCccccCC-Ccchhhhhhhhhc
Q psy1205 272 R-RCNWPRGKCAIRRNTGAENHQAGSCKMGPASDPSAVVSPELKVHGVDRLRVVDCSIMPAVTSGS-APLGGIQALRITR 349 (868)
Q Consensus 272 ~-~~~~~~~~~~~r~~~~t~~H~~Gtc~mgp~~~~g~VVD~~lrV~Gv~~LRVvD~S~~p~~~~g~-~~~g~~~a~~~~~ 349 (868)
. ......+++|||+++.|+||+||||+|| +|||++||||||+||||||+||||.+|++| -++..+.|.++|+
T Consensus 501 ~~~~~d~~l~~~ir~~~~t~~H~~GTc~MG------~VVD~~lrV~GV~~LRVvDaSi~P~~p~~np~atv~miaer~A~ 574 (587)
T PLN02785 501 KHTNDTKSLEQFCKDTVITIWHYHGGCHVG------KVVDQNYKVLGVSRLRVIDGSTFDESPGTNPQATVMMMGRYMGV 574 (587)
T ss_pred CCCCCHHHHHHHHHHhcccccCCcccccCC------CeECCCCeEeccCCeEEeecccCCCCCCCccHHHHHHHHHHHHH
Confidence 0 0011246899999999999999999999 799999999999999999999999999999 6777778888875
Q ss_pred c
Q psy1205 350 Q 350 (868)
Q Consensus 350 ~ 350 (868)
.
T Consensus 575 ~ 575 (587)
T PLN02785 575 K 575 (587)
T ss_pred H
Confidence 4
No 14
>PF05199 GMC_oxred_C: GMC oxidoreductase; InterPro: IPR007867 The glucose-methanol-choline (GMC) oxidoreductases are FAD flavoproteins oxidoreductases [, ]. These enzymes include a variety of proteins; choline dehydrogenase (CHD), methanol oxidase (MOX) and cellobiose dehydrogenase (1.1.99.18 from EC) [] which share a number of regions of sequence similarities. The function of this C-terminal conserved domain is not yet known.; GO: 0016614 oxidoreductase activity, acting on CH-OH group of donors, 0055114 oxidation-reduction process; PDB: 3BG7_F 2IGM_D 3BLY_A 3BG6_H 3LSK_A 2IGO_A 3K4B_A 3K4L_B 2IGN_B 3K4M_H ....
Probab=99.77 E-value=1.3e-19 Score=175.33 Aligned_cols=121 Identities=26% Similarity=0.359 Sum_probs=82.4
Q ss_pred cceEEEEecCCCCCCCCCCceecccCCCccccCCCC-----Ccchhhhc---------ccccc-------cccCCCchhh
Q psy1205 224 WRVLLIEAGGDEPTGTQIPSMFLNFLGSSIDYGYKT-----EPEDMACL---------NNEER-------RCNWPRGKCA 282 (868)
Q Consensus 224 ~~~~~~~~~~~~p~~~~~p~i~~~y~~~~~d~~~~~-----~~~~~~~~---------~~~~~-------~~~~~~~~~~ 282 (868)
.+.+.|++.+.|| ++.|.|++||+.++.|..... ..+.+... ..... ......+++|
T Consensus 2 ~S~G~V~L~~~d~--~~~p~i~~~y~~~~~D~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (144)
T PF05199_consen 2 KSRGRVTLDSSDP--FGQPLIDPNYLSDPRDLEALREGIKRARRILRAAFEEIGAGELLPGPSPFCPDASLDSDEDLECY 79 (144)
T ss_dssp SS-BEEEESSSST--TSEEEEE--TTSSHHHHHHHHHHHHHHHHHHTSGGGGTEEEEEESCGCSCCGCSTTTCHHHHHHH
T ss_pred CCCcEEEeCCCCC--CCCcEEEeCCCCCHHHHHHHHHHHHHHHHHHhhhhcccccccccccccccccccccccchhhhhh
Confidence 4567799999888 899999999999999911111 01111100 00000 0000124889
Q ss_pred hhcccccccccCcCcccCCCCCCCCccCCCceeecccCeEEeecccCCccccCC-Ccchhhhhhhh
Q psy1205 283 IRRNTGAENHQAGSCKMGPASDPSAVVSPELKVHGVDRLRVVDCSIMPAVTSGS-APLGGIQALRI 347 (868)
Q Consensus 283 ~r~~~~t~~H~~Gtc~mgp~~~~g~VVD~~lrV~Gv~~LRVvD~S~~p~~~~g~-~~~g~~~a~~~ 347 (868)
+++++.+.||++|||+||+ .+..+|||+++||||++||||+|+|+||..+++| .++..+.|.|+
T Consensus 80 ~~~~~~~~~H~~Gt~~mG~-~~~~~VvD~~~rv~g~~nL~V~DaSv~P~~~~~np~~t~~ala~ra 144 (144)
T PF05199_consen 80 IRQNVGTSWHPSGTCRMGP-DPDTSVVDPDLRVHGVRNLRVADASVFPTSPGANPTLTIMALAERA 144 (144)
T ss_dssp HHHHGEECSS-BETT-BTS-STTTTSB-TTSBBTTSBSEEE-SGGGSSS-SSSSSHHHHHHHHHHH
T ss_pred eeeccceecccccceeccc-cCCceeECCCCCeeeeeeEEECCCCcCCCCCCcCcHHHHHHHeeCC
Confidence 9999999999999999997 4444999999999999999999999999999999 77777788763
No 15
>PF00732 GMC_oxred_N: GMC oxidoreductase; InterPro: IPR000172 The glucose-methanol-choline (GMC) oxidoreductases are FAD flavoproteins oxidoreductases [, ]. These enzymes include a variety of proteins; choline dehydrogenase (CHD), methanol oxidase (MOX) and cellobiose dehydrogenase (1.1.99.18 from EC) [] which share a number of regions of sequence similarities. One of these regions, located in the N-terminal section, corresponds to the FAD ADP- binding domain. The function of the other conserved domains is not yet known.; GO: 0016614 oxidoreductase activity, acting on CH-OH group of donors, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 3Q9T_B 1B4V_A 3GYJ_A 1CBO_A 1B8S_A 1N4V_A 1N4W_A 3CNJ_A 1IJH_A 2GEW_A ....
Probab=99.13 E-value=1.9e-11 Score=133.32 Aligned_cols=61 Identities=34% Similarity=0.614 Sum_probs=51.6
Q ss_pred ceEEEECCCchhhhHHhhhhccCcccccccCCCCC--------------------------------------------c
Q psy1205 62 YDFIVIGGGSSGAVVANRLSEMNTCNCPVTQPGPT--------------------------------------------L 97 (868)
Q Consensus 62 ~d~~~~g~~~~~~~~a~~~~~~~~~~~LvlE~G~~--------------------------------------------L 97 (868)
|||||||+|++||++|.|||++++.||||||||+. |
T Consensus 1 yD~iIVGsG~~G~v~A~rLs~~~~~~VlvlEaG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~l 80 (296)
T PF00732_consen 1 YDYIIVGSGAGGSVVASRLSEAGNKKVLVLEAGPRYPPEDSTPPSSFYQDFDSEYDWGYYSGPQPFLNGRTINWPRGKGL 80 (296)
T ss_dssp EEEEEES-SHHHHHHHHHHTTSTTS-EEEEESSBSCTTSGHHGGGGGGGCTTTTTBBGEEECEEECTTTTSEEEEEB-ST
T ss_pred CCEEEECcCHHHHHHHHHHhhCCCCcEEEEEccccCccccchhhhccccccCcccccccccccccccccceeeeecceec
Confidence 89999999999999999999998899999999976 5
Q ss_pred c--ccchhhHHH-------------------HHHHHHHHHHHhcCC
Q psy1205 98 A--STCGGSAYM-------------------LFMGLLEVFIRSQCD 122 (868)
Q Consensus 98 G--s~iN~~~y~-------------------~~~~l~~~~~~~e~~ 122 (868)
| |+||+|.|. +|+++.|||.+.|.+
T Consensus 81 GGsS~in~~~~~R~~~~df~~w~~~~g~~~w~~~~l~~~~~~~e~~ 126 (296)
T PF00732_consen 81 GGSSAINGGVYFRPSPSDFDEWAREFGADGWSWDDLEPYYDKAETF 126 (296)
T ss_dssp TGGGGTS--BE-B--HHHHHHHHHTTTCTTGSHHHHHHHHHHHEEE
T ss_pred CCcccccccccccCCcccchhhhhcccccccchhhHHHHHHHHHhh
Confidence 5 999999987 588999999999975
No 16
>TIGR02462 pyranose_ox pyranose oxidase. Pyranose oxidase (also called glucose 2-oxidase) converts D-glucose and molecular oxygen to 2-dehydro-D-glucose and hydrogen peroxide. Peroxide production is believed to be important to the wood rot fungi in which this enzyme is found for lignin degradation.
Probab=98.75 E-value=4.6e-09 Score=121.66 Aligned_cols=61 Identities=20% Similarity=0.261 Sum_probs=56.1
Q ss_pred cccccCcCcccCCCCCCCCccCCCceeecccCeEEeecccCCccccCC-Ccchhhhhhhhhcc
Q psy1205 289 AENHQAGSCKMGPASDPSAVVSPELKVHGVDRLRVVDCSIMPAVTSGS-APLGGIQALRITRQ 350 (868)
Q Consensus 289 t~~H~~Gtc~mgp~~~~g~VVD~~lrV~Gv~~LRVvD~S~~p~~~~g~-~~~g~~~a~~~~~~ 350 (868)
+.+|.+|||+||. .+..+|||+++||||++||+|+|+|+||..+..| .++.++.|+|+|+.
T Consensus 477 ~~~H~~Gt~rMG~-dp~~sVvd~~~rv~g~~NL~V~d~s~~Pt~~~~nPtlTi~ala~r~a~~ 538 (544)
T TIGR02462 477 LALHLAGTTRIGF-DEQTTVANTDSKVHNFKNLYVGGNGNIPTAFGANPTLTSMCYAIKSAEY 538 (544)
T ss_pred ccccCCCCeecCC-CCCCceECCCCcEeCCCCeEEeccCcCCCCCCCCcHHHHHHHHHHHHHH
Confidence 5789999999994 5667999999999999999999999999999999 89999999999864
No 17
>PRK12845 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=98.65 E-value=1.7e-07 Score=110.67 Aligned_cols=57 Identities=23% Similarity=0.298 Sum_probs=48.9
Q ss_pred hccCCCCeEEEccceEeEEEEcCCCCeEEEEEEEECCeEEEEEeccEEEEccCCcCchH
Q psy1205 512 PIISRNNLHILLNTTVTRVIVDPLTKAAIGVEFLTNGRLERLQAKNEVIVCAGAVDSPR 570 (868)
Q Consensus 512 ~~~~~~nl~I~~~~~V~rIl~d~~~~~a~GV~~~~~g~~~~v~A~k~VILAAGai~SP~ 570 (868)
...++.+++|++++.|++|+.+ +++++||.+..+++++.|+|+|.||||+|+|+..+
T Consensus 225 ~~~~~~Gv~i~~~t~v~~Li~~--~g~V~GV~~~~~g~~~~i~a~kaVILAtGGf~~n~ 281 (564)
T PRK12845 225 AGVLRAGIPIWTETSLVRLTDD--GGRVTGAVVDHRGREVTVTARRGVVLAAGGFDHDM 281 (564)
T ss_pred HHHHHCCCEEEecCEeeEEEec--CCEEEEEEEEECCcEEEEEcCCEEEEecCCccccH
Confidence 3345678999999999999975 58999999887888889999889999999999654
No 18
>PRK12835 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=98.61 E-value=1.5e-07 Score=111.77 Aligned_cols=63 Identities=27% Similarity=0.426 Sum_probs=52.9
Q ss_pred hhhccCCCCeEEEccceEeEEEEcCCCCeEEEEEEEECCeEEEEEeccEEEEccCCcCc-hHHHH
Q psy1205 510 LRPIISRNNLHILLNTTVTRVIVDPLTKAAIGVEFLTNGRLERLQAKNEVIVCAGAVDS-PRILL 573 (868)
Q Consensus 510 L~~~~~~~nl~I~~~~~V~rIl~d~~~~~a~GV~~~~~g~~~~v~A~k~VILAAGai~S-P~LLl 573 (868)
|..+.+..|++|++++.|++|+.|+ +++|+||.+..+++.++|+|+|.||||+|+|+. +.++.
T Consensus 219 l~~~~~~~gv~i~~~~~~~~Li~d~-~g~V~Gv~~~~~~~~~~i~a~~aVilAtGGf~~N~em~~ 282 (584)
T PRK12835 219 LRLALKDAGVPLWLDSPMTELITDP-DGAVVGAVVEREGRTLRIGARRGVILATGGFDHDMDWRK 282 (584)
T ss_pred HHHHHHhCCceEEeCCEEEEEEECC-CCcEEEEEEEeCCcEEEEEeceeEEEecCcccCCHHHHH
Confidence 4455567899999999999999974 579999999888888899998889999999986 54444
No 19
>PRK12837 3-ketosteroid-delta-1-dehydrogenase; Provisional
Probab=98.56 E-value=2e-07 Score=109.36 Aligned_cols=64 Identities=22% Similarity=0.396 Sum_probs=52.6
Q ss_pred hhhhhccCCCCeEEEccceEeEEEEcCCCCeEEEEEEEECCeEEEEEeccEEEEccCCcCc-hHHHH
Q psy1205 508 AFLRPIISRNNLHILLNTTVTRVIVDPLTKAAIGVEFLTNGRLERLQAKNEVIVCAGAVDS-PRILL 573 (868)
Q Consensus 508 ~~L~~~~~~~nl~I~~~~~V~rIl~d~~~~~a~GV~~~~~g~~~~v~A~k~VILAAGai~S-P~LLl 573 (868)
.++..+.++++++|++++.|++|+.+ +++++||++..+++.++|+|+|.||||+|+++. +.++.
T Consensus 178 ~l~~~~~~~~gv~i~~~t~~~~Li~~--~g~v~Gv~~~~~g~~~~i~A~k~VIlAtGG~~~n~~m~~ 242 (513)
T PRK12837 178 RFLAALARFPNARLRLNTPLVELVVE--DGRVVGAVVERGGERRRVRARRGVLLAAGGFEQNDDMRA 242 (513)
T ss_pred HHHHHHHhCCCCEEEeCCEEEEEEec--CCEEEEEEEEECCcEEEEEeCceEEEeCCCccCCHHHHH
Confidence 34545555579999999999999987 689999998778888999998899999999975 44443
No 20
>PRK12844 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=98.55 E-value=2e-07 Score=110.25 Aligned_cols=62 Identities=19% Similarity=0.320 Sum_probs=51.8
Q ss_pred hhhhccCCCCeEEEccceEeEEEEcCCCCeEEEEEEEECCeEEEEEeccEEEEccCCcCchHHH
Q psy1205 509 FLRPIISRNNLHILLNTTVTRVIVDPLTKAAIGVEFLTNGRLERLQAKNEVIVCAGAVDSPRIL 572 (868)
Q Consensus 509 ~L~~~~~~~nl~I~~~~~V~rIl~d~~~~~a~GV~~~~~g~~~~v~A~k~VILAAGai~SP~LL 572 (868)
.|....++.+++|++++.|++|+.+ +++++||++..+++.++++|+|.||||+|+|+.-+=|
T Consensus 213 ~l~~~~~~~gv~i~~~~~v~~Li~~--~g~v~Gv~~~~~g~~~~i~A~~aVIlAtGG~~~N~em 274 (557)
T PRK12844 213 RMLEAALAAGVPLWTNTPLTELIVE--DGRVVGVVVVRDGREVLIRARRGVLLASGGFGHNAEM 274 (557)
T ss_pred HHHHHHHhCCCEEEeCCEEEEEEEe--CCEEEEEEEEECCeEEEEEecceEEEecCCccCCHHH
Confidence 3444456679999999999999987 6899999998888888999988999999999874333
No 21
>PRK07121 hypothetical protein; Validated
Probab=98.51 E-value=7.2e-07 Score=104.45 Aligned_cols=64 Identities=27% Similarity=0.353 Sum_probs=51.3
Q ss_pred hhhhccCCCCeEEEccceEeEEEEcCCCCeEEEEEEEECCeEEEEEeccEEEEccCCcCchHHHH
Q psy1205 509 FLRPIISRNNLHILLNTTVTRVIVDPLTKAAIGVEFLTNGRLERLQAKNEVIVCAGAVDSPRILL 573 (868)
Q Consensus 509 ~L~~~~~~~nl~I~~~~~V~rIl~d~~~~~a~GV~~~~~g~~~~v~A~k~VILAAGai~SP~LLl 573 (868)
.|....++.+++|++++.|++|+.+. +++++||++..+++.++++|+|.||||+|++..-+=|+
T Consensus 182 ~L~~~~~~~gv~i~~~~~v~~l~~~~-~g~v~Gv~~~~~~~~~~i~a~k~VVlAtGg~~~N~em~ 245 (492)
T PRK07121 182 PLAKRAAALGVQIRYDTRATRLIVDD-DGRVVGVEARRYGETVAIRARKGVVLAAGGFAMNREMV 245 (492)
T ss_pred HHHHHHHhCCCEEEeCCEEEEEEECC-CCCEEEEEEEeCCcEEEEEeCCEEEECCCCcCcCHHHH
Confidence 34444566799999999999999873 47899999987777888999679999999998644443
No 22
>PF00890 FAD_binding_2: FAD binding domain of the Pfam family.; InterPro: IPR003953 In bacteria two distinct, membrane-bound, enzyme complexes are responsible for the interconversion of fumarate and succinate (1.3.99.1 from EC): fumarate reductase (Frd) is used in anaerobic growth, and succinate dehydrogenase (Sdh) is used in aerobic growth. Both complexes consist of two main components: a membrane-extrinsic component composed of a FAD-binding flavoprotein and an iron-sulphur protein; and an hydrophobic component composed of a membrane anchor protein and/or a cytochrome B. In eukaryotes mitochondrial succinate dehydrogenase (ubiquinone) (1.3.5.1 from EC) is an enzyme composed of two subunits: a FAD flavoprotein and and iron-sulphur protein. The flavoprotein subunit is a protein of about 60 to 70 Kd to which FAD is covalently bound to a histidine residue which is located in the N-terminal section of the protein []. The sequence around that histidine is well conserved in Frd and Sdh from various bacterial and eukaryotic species []. This family includes members that bind FAD such as the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase. ; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2BS4_A 2BS3_A 2BS2_A 1E7P_J 1QLB_A 1KNR_A 1KNP_A 1CHU_A 2E5V_A 3AEF_A ....
Probab=98.47 E-value=4e-07 Score=104.38 Aligned_cols=190 Identities=20% Similarity=0.218 Sum_probs=100.6
Q ss_pred cccCCCcchhhhhhhhhcccccchhhhhhhhhhccccCcccccccccccccccCCCcceeechhHHhhhccccCC-hHHH
Q psy1205 332 VTSGSAPLGGIQALRITRQDLVRWDQHLILALSCHRNSKSMVWTGSVLWTAVSCLLSPVLGGTSVLNGMMYIRGS-RADY 410 (868)
Q Consensus 332 ~~~g~~~~g~~~a~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~lGGsS~in~~~~~r~~-~~df 410 (868)
+++|+|++|+.+|+++++.|+ +|+++|+.. .+||+|...++...-.. +.+.
T Consensus 3 vVIG~G~AGl~AA~~Aae~G~----~V~lvek~~------------------------~~gg~~~~s~g~~~~~~~~~~~ 54 (417)
T PF00890_consen 3 VVIGGGLAGLAAAIEAAEAGA----KVLLVEKGP------------------------RLGGSSAFSSGGFDAAGTPPQR 54 (417)
T ss_dssp EEE-SSHHHHHHHHHHHHTTT-----EEEEESSS------------------------GGGSGGGGTCSEEEESSSHSSH
T ss_pred EEECCCHHHHHHHHHHhhhcC----eEEEEEeec------------------------ccccccccccCceeeecccccc
Confidence 679999999999999999998 788999988 78887777655444333 2211
Q ss_pred HHHHHcCCCCCChhchHHHHHHhccCCCCCCCCCCccCCCcceeeccCCCCChhHHHHHHHHHHCCCCCCC-CCCC----
Q psy1205 411 DNWAKAGNPGWSYQDVLPYFLKSEDNQQATMMDQGFHGVGGYLTVTQFPYHPPLSHSILQGAMELGMPVRD-LNGV---- 485 (868)
Q Consensus 411 ~~W~~~G~~~Ws~~~l~pyy~k~e~~~~~~~~~~~~~g~~Gp~~~~~~~~~~~~~~~~~~a~~~lG~~~~~-~n~~---- 485 (868)
+ .+.. -+.+++..++.+.-.... .+..+.. ........++.+++.|+++.. ..+.
T Consensus 55 ~----~~~~-d~~~~~~~~~~~~~~~~~------------~~~~~~~---~~~~~~~~~~~l~~~g~~~~~~~~g~~~~~ 114 (417)
T PF00890_consen 55 E----AGIE-DSPEEFFQDIMAAGGGLN------------DPDLVRA---FVENSPEAIDWLEELGVPFRRDEDGPFAPT 114 (417)
T ss_dssp H----TTTT-CHHHHHHHHHHHHTTT-S-------------HHHHHH---HHHHHHHHHHHHHHTT--B-BGTTSSBCEE
T ss_pred c----cccc-ccccccceeeeccccccc------------ccchhhh---hhhcccceehhhhhhccccccccccccccc
Confidence 1 0100 012222222222221100 0000000 011223345556677887732 1110
Q ss_pred Ccceeeee---eccCCCC--c---ccchhhhhhhhccCCCCeEEEccceEeEEEEcCCCCeEEEEEEE--ECCeEEEEEe
Q psy1205 486 SHTGFMIA---QTTTRNG--S---RLSTSKAFLRPIISRNNLHILLNTTVTRVIVDPLTKAAIGVEFL--TNGRLERLQA 555 (868)
Q Consensus 486 ~~~G~~~~---~~~~~~g--~---R~s~~~~~L~~~~~~~nl~I~~~~~V~rIl~d~~~~~a~GV~~~--~~g~~~~v~A 555 (868)
...+.... .....+. . ........|....++.+++|+.++.|++|+.+ +++|+||++. .+++.++|+|
T Consensus 115 ~~g~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~gv~i~~~~~~~~Li~e--~g~V~Gv~~~~~~~g~~~~i~A 192 (417)
T PF00890_consen 115 PFGGHSPRWRSPPGNPDPPFGGLGGGKALIEALAKAAEEAGVDIRFNTRVTDLITE--DGRVTGVVAENPADGEFVRIKA 192 (417)
T ss_dssp EETTESSTEEEEESSTTSSSHCCCHHHHHHHHHHHHHHHTTEEEEESEEEEEEEEE--TTEEEEEEEEETTTCEEEEEEE
T ss_pred ccCCccccceeeeccccccccccccHHHHHHHHHHHHhhcCeeeeccceeeeEEEe--CCceeEEEEEECCCCeEEEEee
Confidence 00011101 1101111 0 01112222333344567999999999999998 6799999999 5899999999
Q ss_pred ccEEEEccCCcCchHHHH
Q psy1205 556 KNEVIVCAGAVDSPRILL 573 (868)
Q Consensus 556 ~k~VILAAGai~SP~LLl 573 (868)
+ .||||+|+++. .++.
T Consensus 193 ~-aVIlAtGG~~~-~~~~ 208 (417)
T PF00890_consen 193 K-AVILATGGFGG-ELLR 208 (417)
T ss_dssp S-EEEE----BGG-HHHH
T ss_pred e-EEEeccCcccc-cccc
Confidence 7 99999999999 4443
No 23
>PRK07843 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=98.34 E-value=2.4e-06 Score=101.23 Aligned_cols=63 Identities=25% Similarity=0.397 Sum_probs=52.6
Q ss_pred hhhccCCCCeEEEccceEeEEEEcCCCCeEEEEEEEECCeEEEEEeccEEEEccCCcCchHHHHh
Q psy1205 510 LRPIISRNNLHILLNTTVTRVIVDPLTKAAIGVEFLTNGRLERLQAKNEVIVCAGAVDSPRILLL 574 (868)
Q Consensus 510 L~~~~~~~nl~I~~~~~V~rIl~d~~~~~a~GV~~~~~g~~~~v~A~k~VILAAGai~SP~LLl~ 574 (868)
|....++.+++|++++.|++|+.+ +++++||.+..+++.++++|+|.||||+|+|++-+-|+.
T Consensus 214 L~~~~~~~gv~v~~~t~v~~l~~~--~g~v~Gv~~~~~g~~~~i~A~~~VIlAtGG~~~n~~m~~ 276 (557)
T PRK07843 214 LRIGLQRAGVPVLLNTPLTDLYVE--DGRVTGVHAAESGEPQLIRARRGVILASGGFEHNEQMRA 276 (557)
T ss_pred HHHHHHcCCCEEEeCCEEEEEEEe--CCEEEEEEEEeCCcEEEEEeceeEEEccCCcCcCHHHHH
Confidence 334446679999999999999987 579999998778888899998789999999998665554
No 24
>PRK08274 tricarballylate dehydrogenase; Validated
Probab=98.26 E-value=4.2e-06 Score=97.37 Aligned_cols=67 Identities=27% Similarity=0.348 Sum_probs=53.7
Q ss_pred hhhccCCCCeEEEccceEeEEEEcCCCCeEEEEEEE-ECCeEEEEEeccEEEEccCCcCchHHHHhcCCCC
Q psy1205 510 LRPIISRNNLHILLNTTVTRVIVDPLTKAAIGVEFL-TNGRLERLQAKNEVIVCAGAVDSPRILLLSGIGP 579 (868)
Q Consensus 510 L~~~~~~~nl~I~~~~~V~rIl~d~~~~~a~GV~~~-~~g~~~~v~A~k~VILAAGai~SP~LLl~SGIGp 579 (868)
|....++.+++|++++.|++|+.+ +++++||.+. .+++...++| |.||||+|++.+.+.|+.+-.++
T Consensus 137 l~~~~~~~gv~i~~~t~v~~l~~~--~g~v~gv~~~~~~g~~~~i~a-~~VIlAtGg~~~n~~~~~~~~~~ 204 (466)
T PRK08274 137 LYRSAERLGVEIRYDAPVTALELD--DGRFVGARAGSAAGGAERIRA-KAVVLAAGGFESNREWLREAWGQ 204 (466)
T ss_pred HHHHHHHCCCEEEcCCEEEEEEec--CCeEEEEEEEccCCceEEEEC-CEEEECCCCCCCCHHHHHhhcCC
Confidence 333445678999999999999986 5789999885 4666778888 58999999999998888765554
No 25
>PLN02815 L-aspartate oxidase
Probab=98.23 E-value=2.8e-06 Score=100.74 Aligned_cols=188 Identities=13% Similarity=0.091 Sum_probs=103.2
Q ss_pred EEeeccc--CCccccCCCcchhhhhhhhhcccccchhhhhhhhhhccccCcccccccccccccccCCCcceeechhHHhh
Q psy1205 322 RVVDCSI--MPAVTSGSAPLGGIQALRITRQDLVRWDQHLILALSCHRNSKSMVWTGSVLWTAVSCLLSPVLGGTSVLNG 399 (868)
Q Consensus 322 RVvD~S~--~p~~~~g~~~~g~~~a~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~lGGsS~in~ 399 (868)
|.=|.+. ...+++|+|.+|+.+|+.+++.| +++++|+.. ..||+|.+..
T Consensus 21 ~~~~~~~~~~DVlVVG~G~AGl~AAl~Aae~G-----~VvlleK~~------------------------~~gg~s~~a~ 71 (594)
T PLN02815 21 RLDDESTKYFDFLVIGSGIAGLRYALEVAEYG-----TVAIITKDE------------------------PHESNTNYAQ 71 (594)
T ss_pred ccccCcccccCEEEECccHHHHHHHHHHhhCC-----CEEEEECCC------------------------CCCCcHHHhh
Confidence 3344443 35678999999999999999988 277888877 6677666654
Q ss_pred hcccc-CChHHHHHHHHcCCCCCChhchHHHHHHhccCCCCCCCCCCccCCCcceeeccCCCCChhHHHHHHHHHHCCCC
Q psy1205 400 MMYIR-GSRADYDNWAKAGNPGWSYQDVLPYFLKSEDNQQATMMDQGFHGVGGYLTVTQFPYHPPLSHSILQGAMELGMP 478 (868)
Q Consensus 400 ~~~~r-~~~~df~~W~~~G~~~Ws~~~l~pyy~k~e~~~~~~~~~~~~~g~~Gp~~~~~~~~~~~~~~~~~~a~~~lG~~ 478 (868)
+...- ..+ .++.+.||+...+.- ++...+..+..+ .......++.+.+.|++
T Consensus 72 Ggi~a~~~~---------------~Ds~e~~~~d~~~~g---------~~~~d~~lv~~~---~~~s~e~i~~L~~~Gv~ 124 (594)
T PLN02815 72 GGVSAVLDP---------------SDSVESHMRDTIVAG---------AFLCDEETVRVV---CTEGPERVKELIAMGAS 124 (594)
T ss_pred cccccCCCC---------------CCCHHHHHHHHHHhc---------cCCCcHHHHHHH---HHHHHHHHHHHHHhCCe
Confidence 43221 111 123333443332210 000011111100 01112233445568888
Q ss_pred CC-CCCCC----CcceeeeeeccC---CCCcccchhhhhhhhccCCCCeEEEccceEeEEEEcCCCC--eEEEEEEEE--
Q psy1205 479 VR-DLNGV----SHTGFMIAQTTT---RNGSRLSTSKAFLRPIISRNNLHILLNTTVTRVIVDPLTK--AAIGVEFLT-- 546 (868)
Q Consensus 479 ~~-~~n~~----~~~G~~~~~~~~---~~g~R~s~~~~~L~~~~~~~nl~I~~~~~V~rIl~d~~~~--~a~GV~~~~-- 546 (868)
+. +.++. ...|++...... ..|. .-...++..+.+.+|++|+.++.|++|+.+++++ +++||.+..
T Consensus 125 F~~~~~g~~~~~~~gg~s~~R~~~~~d~tG~--~i~~~L~~~~~~~~~i~i~~~~~~~~Li~~~~g~~~~v~Gv~~~~~~ 202 (594)
T PLN02815 125 FDHGEDGNLHLAREGGHSHHRIVHAADMTGR--EIERALLEAVKNDPNITFFEHHFAIDLLTSQDGGSIVCHGADVLDTR 202 (594)
T ss_pred eeecCCCCccccCCCCCccCceeecCCCCHH--HHHHHHHHHHHhcCCCEEEeceEhheeeeecCCCccEEEEEEEEEcC
Confidence 72 11111 122222211110 1111 0112333333445699999999999999864344 489998864
Q ss_pred CCeEEEEEeccEEEEccCCcCc
Q psy1205 547 NGRLERLQAKNEVIVCAGAVDS 568 (868)
Q Consensus 547 ~g~~~~v~A~k~VILAAGai~S 568 (868)
++..+.+.| |.||||+|+++-
T Consensus 203 ~g~~~~i~A-kaVILATGG~g~ 223 (594)
T PLN02815 203 TGEVVRFIS-KVTLLASGGAGH 223 (594)
T ss_pred CCeEEEEEe-ceEEEcCCccee
Confidence 677788888 599999999974
No 26
>PRK06452 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.23 E-value=7.4e-06 Score=97.24 Aligned_cols=55 Identities=15% Similarity=0.160 Sum_probs=45.2
Q ss_pred hhhccCCCCeEEEccceEeEEEEcCCCCeEEEEEEEE--CCeEEEEEeccEEEEccCCcC
Q psy1205 510 LRPIISRNNLHILLNTTVTRVIVDPLTKAAIGVEFLT--NGRLERLQAKNEVIVCAGAVD 567 (868)
Q Consensus 510 L~~~~~~~nl~I~~~~~V~rIl~d~~~~~a~GV~~~~--~g~~~~v~A~k~VILAAGai~ 567 (868)
|.....+.+++|+.++.|++|+.+ +++++||.+.+ +++.+.++| |.||||+|+++
T Consensus 142 L~~~~~~~gv~i~~~~~~~~Li~~--~g~v~Gv~~~~~~~g~~~~i~A-kaVVLATGG~~ 198 (566)
T PRK06452 142 LFERTSGLNVDFYNEWFSLDLVTD--NKKVVGIVAMQMKTLTPFFFKT-KAVVLATGGMG 198 (566)
T ss_pred HHHHHHhCCCEEEeCcEEEEEEEE--CCEEEEEEEEECCCCeEEEEEe-CeEEECCCccc
Confidence 333334568999999999999987 68999998875 566778888 58999999998
No 27
>TIGR01813 flavo_cyto_c flavocytochrome c. This model describes a family of redox proteins related to the succinate dehydrogenases and fumarate reductases of E. coli, mitochondria, and other well-characterized systems. A member of this family from Shewanella frigidimarina NCIMB400 is characterized as a water-soluble periplasmic protein with four heme groups, a non-covalently bound FAD, and essentially unidirectional fumarate reductase activity. At least seven distinct members of this family are found in Shewanella oneidensis, a species able to use a wide variety of pathways for respiraton.
Probab=98.23 E-value=5.8e-06 Score=95.48 Aligned_cols=60 Identities=20% Similarity=0.241 Sum_probs=45.7
Q ss_pred hhhhhccCCCCeEEEccceEeEEEEcCCCCeEEEEEEEE-CCeEEEEEeccEEEEccCCcCch
Q psy1205 508 AFLRPIISRNNLHILLNTTVTRVIVDPLTKAAIGVEFLT-NGRLERLQAKNEVIVCAGAVDSP 569 (868)
Q Consensus 508 ~~L~~~~~~~nl~I~~~~~V~rIl~d~~~~~a~GV~~~~-~g~~~~v~A~k~VILAAGai~SP 569 (868)
..|....++.+++|++++.|++|+.++ +++++||++.. +++.+.+.+ |.||||+|++..-
T Consensus 134 ~~l~~~~~~~gv~i~~~~~v~~l~~~~-~g~v~Gv~~~~~~g~~~~~~a-~~VVlAtGg~~~n 194 (439)
T TIGR01813 134 QKLYKKAKKEGIDTRLNSKVEDLIQDD-QGTVVGVVVKGKGKGIYIKAA-KAVVLATGGFGSN 194 (439)
T ss_pred HHHHHHHHHcCCEEEeCCEeeEeEECC-CCcEEEEEEEeCCCeEEEEec-ceEEEecCCCCCC
Confidence 334444556789999999999999863 57899999876 444455666 5899999998863
No 28
>PRK08958 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.20 E-value=5.5e-06 Score=98.59 Aligned_cols=57 Identities=14% Similarity=0.229 Sum_probs=46.5
Q ss_pred hhhccCCCCeEEEccceEeEEEEcCCCCeEEEEEEEE--CCeEEEEEeccEEEEccCCcCc
Q psy1205 510 LRPIISRNNLHILLNTTVTRVIVDPLTKAAIGVEFLT--NGRLERLQAKNEVIVCAGAVDS 568 (868)
Q Consensus 510 L~~~~~~~nl~I~~~~~V~rIl~d~~~~~a~GV~~~~--~g~~~~v~A~k~VILAAGai~S 568 (868)
|.....+.+++|++++.|++|+.+ ++++++||.+.+ +++.+.++| |.||||+|+++.
T Consensus 149 L~~~~~~~gi~i~~~~~~~~Li~~-~~g~v~Gv~~~~~~~g~~~~i~A-kaVILATGG~~~ 207 (588)
T PRK08958 149 LYQQNLKNHTTIFSEWYALDLVKN-QDGAVVGCTAICIETGEVVYFKA-RATVLATGGAGR 207 (588)
T ss_pred HHHHhhhcCCEEEeCcEEEEEEEC-CCCEEEEEEEEEcCCCcEEEEEc-CeEEECCCCccc
Confidence 434345678999999999999986 357999999854 777888999 589999999985
No 29
>PRK07573 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.20 E-value=5.8e-06 Score=99.26 Aligned_cols=53 Identities=21% Similarity=0.337 Sum_probs=44.9
Q ss_pred ccCCCCeEEEccceEeEEEEcCCCCeEEEEEEEE--CCeEEEEEeccEEEEccCCcCc
Q psy1205 513 IISRNNLHILLNTTVTRVIVDPLTKAAIGVEFLT--NGRLERLQAKNEVIVCAGAVDS 568 (868)
Q Consensus 513 ~~~~~nl~I~~~~~V~rIl~d~~~~~a~GV~~~~--~g~~~~v~A~k~VILAAGai~S 568 (868)
..++.|++|+.++.|++|+.+ +++++||.+.+ ++..+.+.|+ .||||+|+++.
T Consensus 179 ~~~~~gV~i~~~t~v~~Li~d--~g~V~GV~~~~~~~g~~~~i~Ak-aVVLATGG~g~ 233 (640)
T PRK07573 179 QIAAGTVKMYTRTEMLDLVVV--DGRARGIVARNLVTGEIERHTAD-AVVLATGGYGN 233 (640)
T ss_pred HHHhcCCEEEeceEEEEEEEe--CCEEEEEEEEECCCCcEEEEECC-EEEECCCCccc
Confidence 345678999999999999987 57999999875 5667788885 89999999986
No 30
>TIGR01811 sdhA_Bsu succinate dehydrogenase or fumarate reductase, flavoprotein subunit, Bacillus subtilis subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in the low-GC Gram-positive bacteria and a few other lineages. This enzyme may act in a complete or partial TCA cycle, or act in the opposite direction as fumarate reductase. In some but not all species, succinate dehydrogenase and fumarate reductase may be encoded as separate isozymes.
Probab=98.20 E-value=7.7e-06 Score=97.60 Aligned_cols=51 Identities=20% Similarity=0.190 Sum_probs=43.0
Q ss_pred CCCeEEEccceEeEEEEcCCCCeEEEEEEEE--CCeEEEEEeccEEEEccCCcCc
Q psy1205 516 RNNLHILLNTTVTRVIVDPLTKAAIGVEFLT--NGRLERLQAKNEVIVCAGAVDS 568 (868)
Q Consensus 516 ~~nl~I~~~~~V~rIl~d~~~~~a~GV~~~~--~g~~~~v~A~k~VILAAGai~S 568 (868)
..|++|+.++.|++|+.+ ++++++||.+.+ +++.+.+.|+ .||||+|+++.
T Consensus 145 ~~gV~i~~~t~v~~Li~d-d~grV~GV~~~~~~~g~~~~i~Ak-aVVLATGG~g~ 197 (603)
T TIGR01811 145 AGLVEKYEGWEMLDIIVV-DGNRARGIIARNLVTGEIETHSAD-AVILATGGYGN 197 (603)
T ss_pred cCCcEEEeCcEEEEEEEc-CCCEEEEEEEEECCCCcEEEEEcC-EEEECCCCCcC
Confidence 468999999999999986 357999999876 5666788885 89999999874
No 31
>PRK07395 L-aspartate oxidase; Provisional
Probab=98.20 E-value=4.7e-06 Score=98.37 Aligned_cols=54 Identities=24% Similarity=0.448 Sum_probs=45.4
Q ss_pred cCCCCeEEEccceEeEEEEcCCCCeEEEEEEEECCeEEEEEeccEEEEccCCcCc
Q psy1205 514 ISRNNLHILLNTTVTRVIVDPLTKAAIGVEFLTNGRLERLQAKNEVIVCAGAVDS 568 (868)
Q Consensus 514 ~~~~nl~I~~~~~V~rIl~d~~~~~a~GV~~~~~g~~~~v~A~k~VILAAGai~S 568 (868)
.+++|++|++++.|++|+.++++++++||.+..++..+.++| |.||||+|+++.
T Consensus 145 ~~~~gi~i~~~~~v~~Li~~~~~g~v~Gv~~~~~g~~~~i~A-kaVILATGG~~~ 198 (553)
T PRK07395 145 LQRPNIEIISQALALSLWLEPETGRCQGISLLYQGQITWLRA-GAVILATGGGGQ 198 (553)
T ss_pred hhcCCcEEEECcChhhheecCCCCEEEEEEEEECCeEEEEEc-CEEEEcCCCCcc
Confidence 345699999999999999874347999998877887778888 589999999864
No 32
>PLN00128 Succinate dehydrogenase [ubiquinone] flavoprotein subunit
Probab=98.16 E-value=9.5e-06 Score=97.14 Aligned_cols=53 Identities=25% Similarity=0.392 Sum_probs=44.4
Q ss_pred cCCCCeEEEccceEeEEEEcCCCCeEEEEEEEE--CCeEEEEEeccEEEEccCCcCc
Q psy1205 514 ISRNNLHILLNTTVTRVIVDPLTKAAIGVEFLT--NGRLERLQAKNEVIVCAGAVDS 568 (868)
Q Consensus 514 ~~~~nl~I~~~~~V~rIl~d~~~~~a~GV~~~~--~g~~~~v~A~k~VILAAGai~S 568 (868)
..+.|++|+.++.+++|+.+ +++++.||.+.. +|+.+.++|+ .||||+|+++.
T Consensus 197 a~~~gv~i~~~~~~~~Li~~-~~g~v~Gv~~~~~~~g~~~~i~Ak-aVILATGG~g~ 251 (635)
T PLN00128 197 AMKHNTQFFVEYFALDLIMD-SDGACQGVIALNMEDGTLHRFRAH-STILATGGYGR 251 (635)
T ss_pred HHhCCCEEEEeeEEEEEEEc-CCCEEEEEEEEEcCCCeEEEEEcC-eEEECCCCCcc
Confidence 34568999999999999886 357999998865 6778888995 89999999985
No 33
>PRK06175 L-aspartate oxidase; Provisional
Probab=98.15 E-value=1.4e-05 Score=91.76 Aligned_cols=57 Identities=19% Similarity=0.402 Sum_probs=45.9
Q ss_pred hhhhccCCCCeEEEccceEeEEEEcCCCCeEEEEEEEECCeEEEEEeccEEEEccCCcCc
Q psy1205 509 FLRPIISRNNLHILLNTTVTRVIVDPLTKAAIGVEFLTNGRLERLQAKNEVIVCAGAVDS 568 (868)
Q Consensus 509 ~L~~~~~~~nl~I~~~~~V~rIl~d~~~~~a~GV~~~~~g~~~~v~A~k~VILAAGai~S 568 (868)
++..+.++.|++|++++.|++|+.+ +++++||.+..++..++++| |.||||+|+++.
T Consensus 134 L~~~~~~~~gV~i~~~t~v~~Li~~--~~~v~Gv~~~~~g~~~~i~A-k~VILAtGG~~~ 190 (433)
T PRK06175 134 LLKKVKKRKNITIIENCYLVDIIEN--DNTCIGAICLKDNKQINIYS-KVTILATGGIGG 190 (433)
T ss_pred HHHHHHhcCCCEEEECcEeeeeEec--CCEEEEEEEEECCcEEEEEc-CeEEEccCcccc
Confidence 3334445679999999999999876 57899988776776678999 589999999875
No 34
>PRK06481 fumarate reductase flavoprotein subunit; Validated
Probab=98.15 E-value=1.3e-05 Score=94.11 Aligned_cols=190 Identities=14% Similarity=0.204 Sum_probs=103.7
Q ss_pred ccccCCCcchhhhhhhhhcccccchhhhhhhhhhccccCcccccccccccccccCCCcceeechhHHhhhccccCChHHH
Q psy1205 331 AVTSGSAPLGGIQALRITRQDLVRWDQHLILALSCHRNSKSMVWTGSVLWTAVSCLLSPVLGGTSVLNGMMYIRGSRADY 410 (868)
Q Consensus 331 ~~~~g~~~~g~~~a~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~lGGsS~in~~~~~r~~~~df 410 (868)
.+++|+|.+|+.+|+.+++.|+ +|+++|+.. .+||+|....+.+.-.. ..+
T Consensus 64 VvVVG~G~AGl~AAi~Aa~~Ga----~VivlEK~~------------------------~~GG~s~~s~Gg~~~~~-~~~ 114 (506)
T PRK06481 64 IVIVGAGGAGMSAAIEAKDAGM----NPVILEKMP------------------------VAGGNTMKASSGMNASE-TKF 114 (506)
T ss_pred EEEECcCHHHHHHHHHHHHCCC----CEEEEECCC------------------------CCCCcccccCCccccCC-hHH
Confidence 4789999999999999999998 688999888 77887766554433222 223
Q ss_pred HHHHHcCCCCCChhchHHHHHHhccCCCCCCCCCCccCCCcceeeccCCCCChhHHHHHHHHHHCCCCCCCC--CCCCcc
Q psy1205 411 DNWAKAGNPGWSYQDVLPYFLKSEDNQQATMMDQGFHGVGGYLTVTQFPYHPPLSHSILQGAMELGMPVRDL--NGVSHT 488 (868)
Q Consensus 411 ~~W~~~G~~~Ws~~~l~pyy~k~e~~~~~~~~~~~~~g~~Gp~~~~~~~~~~~~~~~~~~a~~~lG~~~~~~--n~~~~~ 488 (868)
+. ..|.. ++.+.||+...+.. ++...+..+..+-... ....+.++++|+++... .+....
T Consensus 115 ~~--~~g~~----d~~~~~~~~~~~~~---------~~~~d~~l~~~~~~~s---~~~i~wl~~~Gv~~~~~~~~~g~~~ 176 (506)
T PRK06481 115 QK--AQGIA----DSNDKFYEETLKGG---------GGTNDKALLRYFVDNS---ASAIDWLDSMGIKLDNLTITGGMSE 176 (506)
T ss_pred HH--hcCCC----CCHHHHHHHHHHhc---------CCCCCHHHHHHHHhcc---HHHHHHHHHcCceEeecccCCCCCC
Confidence 21 12211 22333444332210 0000011011100011 12334456678776321 111100
Q ss_pred eeeeeeccCCCCccc-chhhhhhhhccCCCCeEEEccceEeEEEEcCCCCeEEEEEEEE-CCeEEEEEeccEEEEccCCc
Q psy1205 489 GFMIAQTTTRNGSRL-STSKAFLRPIISRNNLHILLNTTVTRVIVDPLTKAAIGVEFLT-NGRLERLQAKNEVIVCAGAV 566 (868)
Q Consensus 489 G~~~~~~~~~~g~R~-s~~~~~L~~~~~~~nl~I~~~~~V~rIl~d~~~~~a~GV~~~~-~g~~~~v~A~k~VILAAGai 566 (868)
...+. ...+... ......|....+..+++|++++.|++|+.+ +++++||.+.. +++..+++| |.||||+|++
T Consensus 177 ~r~~~---p~~g~~~g~~l~~~L~~~~~~~gv~i~~~t~v~~l~~~--~g~V~Gv~~~~~~g~~~~i~a-~~VVlAtGG~ 250 (506)
T PRK06481 177 KRTHR---PHDGSAVGGYLVDGLLKNVQERKIPLFVNADVTKITEK--DGKVTGVKVKINGKETKTISS-KAVVVTTGGF 250 (506)
T ss_pred Cceec---cCCCCCChHHHHHHHHHHHHHcCCeEEeCCeeEEEEec--CCEEEEEEEEeCCCeEEEEec-CeEEEeCCCc
Confidence 00000 0111100 011222333345578999999999999875 68899998875 446678888 5899999998
Q ss_pred CchHHHH
Q psy1205 567 DSPRILL 573 (868)
Q Consensus 567 ~SP~LLl 573 (868)
....=++
T Consensus 251 ~~n~~m~ 257 (506)
T PRK06481 251 GANKDMI 257 (506)
T ss_pred ccCHHHH
Confidence 8654333
No 35
>PTZ00306 NADH-dependent fumarate reductase; Provisional
Probab=98.10 E-value=6.4e-06 Score=105.33 Aligned_cols=53 Identities=25% Similarity=0.424 Sum_probs=44.4
Q ss_pred CCeEEEccceEeEEEEcCC----C---CeEEEEEEEE----CCeEEEEEeccEEEEccCCcCchH
Q psy1205 517 NNLHILLNTTVTRVIVDPL----T---KAAIGVEFLT----NGRLERLQAKNEVIVCAGAVDSPR 570 (868)
Q Consensus 517 ~nl~I~~~~~V~rIl~d~~----~---~~a~GV~~~~----~g~~~~v~A~k~VILAAGai~SP~ 570 (868)
.+++|++++.|++|+.+++ + ++|+||++.. +|+.+.++| |.||||+|+|+.-.
T Consensus 560 ~gv~i~~~t~~~~LI~d~~~~~~G~~~~~V~Gv~~~~~~~~~g~~~~i~A-kaVILATGGf~~N~ 623 (1167)
T PTZ00306 560 GRVTIMTETTVTSLLSESSARPDGVREIRVTGVRYKQASDASGQVMDLLA-DAVILATGGFSNDH 623 (1167)
T ss_pred CCcEEEECCEEEEEEecCCcccCCCccceEEEEEEEecccCCCcEEEEEe-ceEEEecCCcccCc
Confidence 6899999999999999742 2 3899999975 577788999 58999999999743
No 36
>PRK08641 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.08 E-value=2.3e-05 Score=93.43 Aligned_cols=50 Identities=14% Similarity=0.128 Sum_probs=41.6
Q ss_pred CCeEEEccceEeEEEEcCCCCeEEEEEEEE--CCeEEEEEeccEEEEccCCcCc
Q psy1205 517 NNLHILLNTTVTRVIVDPLTKAAIGVEFLT--NGRLERLQAKNEVIVCAGAVDS 568 (868)
Q Consensus 517 ~nl~I~~~~~V~rIl~d~~~~~a~GV~~~~--~g~~~~v~A~k~VILAAGai~S 568 (868)
.+++|+.++.+++|+.+ ++++++||.+.+ +++.+.+.| |.||||+|++..
T Consensus 150 ~~i~i~~~~~~~~Li~~-~~g~v~Gv~~~~~~~g~~~~i~A-kaVILATGG~~~ 201 (589)
T PRK08641 150 GLVTKYEGWEFLGAVLD-DEGVCRGIVAQDLFTMEIESFPA-DAVIMATGGPGI 201 (589)
T ss_pred CCcEEEeeEEEEEEEEC-CCCEEEEEEEEECCCCcEEEEEC-CEEEECCCCCcC
Confidence 35899999999999986 357999999876 456677888 589999999985
No 37
>PRK06263 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.07 E-value=1.1e-05 Score=95.64 Aligned_cols=57 Identities=26% Similarity=0.457 Sum_probs=45.7
Q ss_pred hhhccCCCCeEEEccceEeEEEEcCCCCeEEEEEEEE--CCeEEEEEeccEEEEccCCcCc
Q psy1205 510 LRPIISRNNLHILLNTTVTRVIVDPLTKAAIGVEFLT--NGRLERLQAKNEVIVCAGAVDS 568 (868)
Q Consensus 510 L~~~~~~~nl~I~~~~~V~rIl~d~~~~~a~GV~~~~--~g~~~~v~A~k~VILAAGai~S 568 (868)
|.....+.+++|++++.|++|+.+ ++++++||.+.. ++..+.++| |.||||+|+++.
T Consensus 140 L~~~~~~~gv~i~~~t~v~~Li~~-~~~~v~Gv~~~~~~~g~~~~i~A-kaVIlATGG~~~ 198 (543)
T PRK06263 140 LMEYLIKERIKILEEVMAIKLIVD-ENREVIGAIFLDLRNGEIFPIYA-KATILATGGAGQ 198 (543)
T ss_pred HHHHHhcCCCEEEeCeEeeeeEEe-CCcEEEEEEEEECCCCcEEEEEc-CcEEECCCCCCC
Confidence 444445589999999999999987 345699998765 677778999 589999999974
No 38
>PRK12839 hypothetical protein; Provisional
Probab=98.06 E-value=1.6e-05 Score=94.29 Aligned_cols=59 Identities=14% Similarity=0.161 Sum_probs=47.0
Q ss_pred hccCCCCeEEEccceEeEEEEcCCCCeEEEEEEEECCeEEEEEeccEEEEccCCcCchHH
Q psy1205 512 PIISRNNLHILLNTTVTRVIVDPLTKAAIGVEFLTNGRLERLQAKNEVIVCAGAVDSPRI 571 (868)
Q Consensus 512 ~~~~~~nl~I~~~~~V~rIl~d~~~~~a~GV~~~~~g~~~~v~A~k~VILAAGai~SP~L 571 (868)
....+.+++|++++.|++|+.++ +++++||.+...+...++.++|.||||+|+|..-.-
T Consensus 222 ~~a~~~Gv~i~~~t~v~~Li~~~-~g~V~GV~~~~~~g~~~i~aak~VVLAtGGf~~n~~ 280 (572)
T PRK12839 222 RSADDLGVDLRVSTSATSLTTDK-NGRVTGVRVQGPDGAVTVEATRGVVLATGGFPNDVD 280 (572)
T ss_pred HHHHHCCCEEEcCCEEEEEEECC-CCcEEEEEEEeCCCcEEEEeCCEEEEcCCCcccCHH
Confidence 33455789999999999998863 579999998775555677777799999999987443
No 39
>PTZ00139 Succinate dehydrogenase [ubiquinone] flavoprotein subunit; Provisional
Probab=98.05 E-value=9.4e-06 Score=97.12 Aligned_cols=58 Identities=16% Similarity=0.266 Sum_probs=46.6
Q ss_pred hhhhccCCCCeEEEccceEeEEEEcCCCCeEEEEEEEE--CCeEEEEEeccEEEEccCCcCc
Q psy1205 509 FLRPIISRNNLHILLNTTVTRVIVDPLTKAAIGVEFLT--NGRLERLQAKNEVIVCAGAVDS 568 (868)
Q Consensus 509 ~L~~~~~~~nl~I~~~~~V~rIl~d~~~~~a~GV~~~~--~g~~~~v~A~k~VILAAGai~S 568 (868)
.|.....+.|++|+.++.|++|+.+ +++++.||.+.. +|+.+.++|+ .||||+|+++.
T Consensus 171 ~L~~~a~~~gv~i~~~~~~~~Li~~-~~g~v~Gv~~~~~~~g~~~~i~Ak-aVVLATGG~~~ 230 (617)
T PTZ00139 171 TLYGQSLKYDCNFFIEYFALDLIMD-EDGECRGVIAMSMEDGSIHRFRAH-YTVIATGGYGR 230 (617)
T ss_pred HHHHHHHhCCCEEEeceEEEEEEEC-CCCEEEEEEEEECCCCeEEEEECC-cEEEeCCCCcc
Confidence 3444445679999999999999984 267999998754 6777888885 89999999975
No 40
>TIGR01176 fum_red_Fp fumarate reductase, flavoprotein subunit. The terms succinate dehydrogenase and fumarate reductase may be used interchangeably in certain systems. However, a number of species have distinct complexes, with the fumarate reductase active under anaerobic conditions. This model represents the fumarate reductase flavoprotein subunit from several such species in which a distinct succinate dehydrogenase is also found. Not all bona fide fumarate reductases will be found by this model.
Probab=98.04 E-value=1.2e-05 Score=95.55 Aligned_cols=52 Identities=21% Similarity=0.332 Sum_probs=44.0
Q ss_pred cCCCCeEEEccceEeEEEEcCCCCeEEEEEEEE--CCeEEEEEeccEEEEccCCcCc
Q psy1205 514 ISRNNLHILLNTTVTRVIVDPLTKAAIGVEFLT--NGRLERLQAKNEVIVCAGAVDS 568 (868)
Q Consensus 514 ~~~~nl~I~~~~~V~rIl~d~~~~~a~GV~~~~--~g~~~~v~A~k~VILAAGai~S 568 (868)
.+.+|++++.++.|++|+.+ ++++.||.+.. +|+.+.++| |.||||+|++.-
T Consensus 143 ~~~~~i~i~~~~~v~~Li~~--~g~v~Gv~~~~~~~g~~~~i~A-kaVILATGG~~~ 196 (580)
T TIGR01176 143 LTYPQIMRYDEWFVTDLLVD--DGRVCGLVAIEMAEGRLVTILA-DAVVLATGGAGR 196 (580)
T ss_pred HhcCCCEEEeCeEEEEEEee--CCEEEEEEEEEcCCCcEEEEec-CEEEEcCCCCcc
Confidence 34468999999999999987 67999998764 677788899 599999999874
No 41
>PRK06134 putative FAD-binding dehydrogenase; Reviewed
Probab=98.03 E-value=1.9e-05 Score=94.14 Aligned_cols=62 Identities=16% Similarity=0.212 Sum_probs=50.5
Q ss_pred hhhccCCCCeEEEccceEeEEEEcCCCCeEEEEEEEECCeEEEEEeccEEEEccCCcCchHHHH
Q psy1205 510 LRPIISRNNLHILLNTTVTRVIVDPLTKAAIGVEFLTNGRLERLQAKNEVIVCAGAVDSPRILL 573 (868)
Q Consensus 510 L~~~~~~~nl~I~~~~~V~rIl~d~~~~~a~GV~~~~~g~~~~v~A~k~VILAAGai~SP~LLl 573 (868)
|....++.+++|++++.|++|+.+ +++++||.+..++..++++|+|.||||+|++..-.-++
T Consensus 223 L~~~a~~~Gv~i~~~t~v~~l~~~--~g~v~GV~~~~~~~~~~i~a~k~VVlAtGg~~~n~~~~ 284 (581)
T PRK06134 223 LLKSAEDLGVRIWESAPARELLRE--DGRVAGAVVETPGGLQEIRARKGVVLAAGGFPHDPARR 284 (581)
T ss_pred HHHHHHhCCCEEEcCCEEEEEEEe--CCEEEEEEEEECCcEEEEEeCCEEEEcCCCcccCHHHH
Confidence 334446679999999999999987 68999999887777778999679999999998755543
No 42
>PRK12843 putative FAD-binding dehydrogenase; Reviewed
Probab=98.03 E-value=3e-05 Score=92.38 Aligned_cols=62 Identities=23% Similarity=0.339 Sum_probs=50.8
Q ss_pred hhhccCCCCeEEEccceEeEEEEcCCCCeEEEEEEEECCeEEEEEeccEEEEccCCcCchHHHH
Q psy1205 510 LRPIISRNNLHILLNTTVTRVIVDPLTKAAIGVEFLTNGRLERLQAKNEVIVCAGAVDSPRILL 573 (868)
Q Consensus 510 L~~~~~~~nl~I~~~~~V~rIl~d~~~~~a~GV~~~~~g~~~~v~A~k~VILAAGai~SP~LLl 573 (868)
|....++.+++|++++.|++|+.+ +++++||.+..+++.+++.|+|.||||+|+++.-+=|+
T Consensus 227 L~~~~~~~Gv~i~~~t~v~~Li~~--~g~V~GV~~~~~g~~~~i~A~~~VVlAtGg~~~n~em~ 288 (578)
T PRK12843 227 LLYSLRARGVRILTQTDVESLETD--HGRVIGATVVQGGVRRRIRARGGVVLATGGFNRHPQLR 288 (578)
T ss_pred HHHHHHhCCCEEEeCCEEEEEEee--CCEEEEEEEecCCeEEEEEccceEEECCCCcccCHHHH
Confidence 334445678999999999999986 68999999887888888998778999999998854333
No 43
>TIGR01812 sdhA_frdA_Gneg succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in Gram-negative bacteria, mitochondria, and some Archaea. Mitochondrial forms interact with ubiquinone and are designated EC 1.3.5.1, but can be degraded to 1.3.99.1. Some isozymes in E. coli and other species run primarily in the opposite direction and are designated fumarate reductase.
Probab=98.02 E-value=2.6e-05 Score=92.94 Aligned_cols=56 Identities=16% Similarity=0.187 Sum_probs=45.2
Q ss_pred hhhccCCCCeEEEccceEeEEEEcCCCCeEEEEEEEE--CCeEEEEEeccEEEEccCCcCc
Q psy1205 510 LRPIISRNNLHILLNTTVTRVIVDPLTKAAIGVEFLT--NGRLERLQAKNEVIVCAGAVDS 568 (868)
Q Consensus 510 L~~~~~~~nl~I~~~~~V~rIl~d~~~~~a~GV~~~~--~g~~~~v~A~k~VILAAGai~S 568 (868)
|.....+.|++|+.++.|++|+.+ +++++||.+.. +++.+.++| |.||||+|++..
T Consensus 135 L~~~~~~~gv~i~~~~~v~~L~~~--~g~v~Gv~~~~~~~g~~~~i~A-k~VVlAtGG~~~ 192 (566)
T TIGR01812 135 LYEQCLKLGVSFFNEYFALDLIHD--DGRVRGVVAYDLKTGEIVFFRA-KAVVLATGGYGR 192 (566)
T ss_pred HHHHHHHcCCEEEeccEEEEEEEe--CCEEEEEEEEECCCCcEEEEEC-CeEEECCCcccC
Confidence 334334559999999999999987 68999998864 666678888 589999999874
No 44
>PRK12834 putative FAD-binding dehydrogenase; Reviewed
Probab=98.01 E-value=2.1e-05 Score=93.24 Aligned_cols=55 Identities=22% Similarity=0.261 Sum_probs=42.9
Q ss_pred CCCeEEEccceEeEEEEcCCCCeEEEEEEEE--C-------------CeEEEEEeccEEEEccCCcCc-hHHHH
Q psy1205 516 RNNLHILLNTTVTRVIVDPLTKAAIGVEFLT--N-------------GRLERLQAKNEVIVCAGAVDS-PRILL 573 (868)
Q Consensus 516 ~~nl~I~~~~~V~rIl~d~~~~~a~GV~~~~--~-------------g~~~~v~A~k~VILAAGai~S-P~LLl 573 (868)
..+++|++++.+++|+.+ +++++||++.. + +..++|+| |.||||+|+|+. +.++.
T Consensus 164 ~~gv~i~~~t~~~~Li~~--~g~V~Gv~~~~~~~~~~~~~~~~~~~~~~~~~i~A-kaVILATGGf~~n~em~~ 234 (549)
T PRK12834 164 RGLVRFRFRHRVDELVVT--DGAVTGVRGTVLEPSDAERGEASSREVVGEFELRA-QAVIVTSGGIGGNHELVR 234 (549)
T ss_pred hCCceEEecCEeeEEEEe--CCEEEEEEEEecccccccccccccccccceEEEec-CEEEEeCCCcccCHHHHH
Confidence 457999999999999987 68999998731 1 23567888 589999999985 44443
No 45
>PRK09231 fumarate reductase flavoprotein subunit; Validated
Probab=97.99 E-value=2e-05 Score=93.89 Aligned_cols=52 Identities=19% Similarity=0.358 Sum_probs=43.5
Q ss_pred cCCCCeEEEccceEeEEEEcCCCCeEEEEEEEE--CCeEEEEEeccEEEEccCCcCc
Q psy1205 514 ISRNNLHILLNTTVTRVIVDPLTKAAIGVEFLT--NGRLERLQAKNEVIVCAGAVDS 568 (868)
Q Consensus 514 ~~~~nl~I~~~~~V~rIl~d~~~~~a~GV~~~~--~g~~~~v~A~k~VILAAGai~S 568 (868)
.+.+|++++.++.|++|+.+ ++++.||.+.. ++..+.++| |.||||+|++..
T Consensus 144 ~~~~~i~i~~~~~v~~Li~~--~g~v~Gv~~~~~~~g~~~~i~A-kaVIlATGG~~~ 197 (582)
T PRK09231 144 LKYPQIQRFDEHFVLDILVD--DGHVRGLVAMNMMEGTLVQIRA-NAVVMATGGAGR 197 (582)
T ss_pred hcCCCcEEEeCeEEEEEEEe--CCEEEEEEEEEcCCCcEEEEEC-CEEEECCCCCcC
Confidence 34468999999999999987 68999998754 677778888 589999999874
No 46
>PRK12842 putative succinate dehydrogenase; Reviewed
Probab=97.99 E-value=2.9e-05 Score=92.56 Aligned_cols=62 Identities=16% Similarity=0.288 Sum_probs=49.5
Q ss_pred hhhccCCCCeEEEccceEeEEEEcCCCCeEEEEEEEECCeEEEEEeccEEEEccCCcCchHHHH
Q psy1205 510 LRPIISRNNLHILLNTTVTRVIVDPLTKAAIGVEFLTNGRLERLQAKNEVIVCAGAVDSPRILL 573 (868)
Q Consensus 510 L~~~~~~~nl~I~~~~~V~rIl~d~~~~~a~GV~~~~~g~~~~v~A~k~VILAAGai~SP~LLl 573 (868)
|....++.+++|++++.|++|+.+ +++++||.+...+....++++|.||||+|++..-.-++
T Consensus 220 L~~~~~~~Gv~i~~~~~v~~l~~~--~g~V~GV~~~~~~~~~~i~a~k~VVlAtGg~~~n~~~~ 281 (574)
T PRK12842 220 LAKSALDLGIPILTGTPARELLTE--GGRVVGARVIDAGGERRITARRGVVLACGGFSHDLARI 281 (574)
T ss_pred HHHHHHhCCCEEEeCCEEEEEEee--CCEEEEEEEEcCCceEEEEeCCEEEEcCCCccchHHHH
Confidence 333445678999999999999987 68999999877555667889778999999998655444
No 47
>PRK09078 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=97.98 E-value=3.7e-05 Score=91.83 Aligned_cols=57 Identities=21% Similarity=0.306 Sum_probs=46.3
Q ss_pred hhhccCCCCeEEEccceEeEEEEcCCCCeEEEEEEEE--CCeEEEEEeccEEEEccCCcCc
Q psy1205 510 LRPIISRNNLHILLNTTVTRVIVDPLTKAAIGVEFLT--NGRLERLQAKNEVIVCAGAVDS 568 (868)
Q Consensus 510 L~~~~~~~nl~I~~~~~V~rIl~d~~~~~a~GV~~~~--~g~~~~v~A~k~VILAAGai~S 568 (868)
|.....+.|++|++++.|++|+.+ ++++++||.+.+ +|+.+.+.| |.||||+|+++.
T Consensus 155 L~~~~~~~gi~i~~~~~v~~Li~~-~~g~v~Gv~~~~~~~g~~~~i~A-kaVVLATGG~~~ 213 (598)
T PRK09078 155 LYQQSLKHNAEFFIEYFALDLIMD-DGGVCRGVVAWNLDDGTLHRFRA-HMVVLATGGYGR 213 (598)
T ss_pred HHHHHhhcCCEEEEeEEEEEEEEc-CCCEEEEEEEEECCCCcEEEEEc-CEEEECCCCCcc
Confidence 334345578999999999999987 347999998854 777788999 489999999986
No 48
>PRK05945 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=97.98 E-value=5.6e-05 Score=90.07 Aligned_cols=56 Identities=29% Similarity=0.408 Sum_probs=45.2
Q ss_pred hhhccCCCCeEEEccceEeEEEEcCCCCeEEEEEEEE--CCeEEEEEeccEEEEccCCcCc
Q psy1205 510 LRPIISRNNLHILLNTTVTRVIVDPLTKAAIGVEFLT--NGRLERLQAKNEVIVCAGAVDS 568 (868)
Q Consensus 510 L~~~~~~~nl~I~~~~~V~rIl~d~~~~~a~GV~~~~--~g~~~~v~A~k~VILAAGai~S 568 (868)
|....++.|++|++++.|++|+.+ ++++.||.... +++...++| |.||||+|++..
T Consensus 141 L~~~~~~~gi~i~~~t~v~~L~~~--~g~v~Gv~~~~~~~g~~~~i~A-kaVVlATGG~~~ 198 (575)
T PRK05945 141 LVNNLRRYGVTIYDEWYVMRLILE--DNQAKGVVMYHIADGRLEVVRA-KAVMFATGGYGR 198 (575)
T ss_pred HHHHHhhCCCEEEeCcEEEEEEEE--CCEEEEEEEEEcCCCeEEEEEC-CEEEECCCCCcC
Confidence 444445679999999999999987 67999998654 666677888 589999999875
No 49
>PRK08626 fumarate reductase flavoprotein subunit; Provisional
Probab=97.95 E-value=4.8e-05 Score=91.63 Aligned_cols=56 Identities=14% Similarity=0.183 Sum_probs=46.5
Q ss_pred hhhccCCCCeEEEccceEeEEEEcCCCCeEEEEEEEE--CCeEEEEEeccEEEEccCCcCc
Q psy1205 510 LRPIISRNNLHILLNTTVTRVIVDPLTKAAIGVEFLT--NGRLERLQAKNEVIVCAGAVDS 568 (868)
Q Consensus 510 L~~~~~~~nl~I~~~~~V~rIl~d~~~~~a~GV~~~~--~g~~~~v~A~k~VILAAGai~S 568 (868)
|.....+.+++|+.++.|++|+.+ ++++.||.+.+ +|+.+.+.| |.||||+|+++.
T Consensus 164 L~~~~~~~gv~i~~~~~~~~Li~~--~g~v~Gv~~~~~~~G~~~~i~A-kaVVLATGG~g~ 221 (657)
T PRK08626 164 VDNEAIKLGVPVHDRKEAIALIHD--GKRCYGAVVRCLITGELRAYVA-KATLIATGGYGR 221 (657)
T ss_pred HHHHHHhCCCEEEeeEEEEEEEEE--CCEEEEEEEEEcCCCcEEEEEc-CeEEECCCcccC
Confidence 334445679999999999999987 68999999875 777788889 589999999874
No 50
>PRK07804 L-aspartate oxidase; Provisional
Probab=97.94 E-value=2.7e-05 Score=91.96 Aligned_cols=58 Identities=19% Similarity=0.294 Sum_probs=43.8
Q ss_pred hhhhccCCCCeEEEccceEeEEEEcCCCCeEEEEEEE-----ECCeEEEEEeccEEEEccCCcCc
Q psy1205 509 FLRPIISRNNLHILLNTTVTRVIVDPLTKAAIGVEFL-----TNGRLERLQAKNEVIVCAGAVDS 568 (868)
Q Consensus 509 ~L~~~~~~~nl~I~~~~~V~rIl~d~~~~~a~GV~~~-----~~g~~~~v~A~k~VILAAGai~S 568 (868)
.|....++.+++|+.++.|++|+.++ ++++.||.+. .++....++| |.||||+|++..
T Consensus 149 ~L~~~~~~~gV~i~~~~~v~~Li~~~-~g~v~Gv~~~~~~~~~~~g~~~i~A-k~VIlATGG~~~ 211 (541)
T PRK07804 149 ALDAAVRADPLDIREHALALDLLTDG-TGAVAGVTLHVLGEGSPDGVGAVHA-PAVVLATGGLGQ 211 (541)
T ss_pred HHHHHHHhCCCEEEECeEeeeeEEcC-CCeEEEEEEEeccCCCCCcEEEEEc-CeEEECCCCCCC
Confidence 34444455679999999999999872 4699999876 2333467888 589999999874
No 51
>PRK07057 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=97.92 E-value=4.1e-05 Score=91.37 Aligned_cols=57 Identities=18% Similarity=0.235 Sum_probs=45.2
Q ss_pred hhhccCCCCeEEEccceEeEEEEcCCCCeEEEEEEEE--CCeEEEEEeccEEEEccCCcCc
Q psy1205 510 LRPIISRNNLHILLNTTVTRVIVDPLTKAAIGVEFLT--NGRLERLQAKNEVIVCAGAVDS 568 (868)
Q Consensus 510 L~~~~~~~nl~I~~~~~V~rIl~d~~~~~a~GV~~~~--~g~~~~v~A~k~VILAAGai~S 568 (868)
|.......+++|+.++.|++|+.+ +++++.||.+.. +++...++| |.||||+|++..
T Consensus 154 L~~~~~~~gi~i~~~~~~~~Li~~-~~g~v~Gv~~~~~~~g~~~~i~A-kaVILATGG~~~ 212 (591)
T PRK07057 154 LYQQNVAAKTQFFVEWMALDLIRD-ADGDVLGVTALEMETGDVYILEA-KTTLFATGGAGR 212 (591)
T ss_pred HHHHHHhcCCEEEeCcEEEEEEEc-CCCeEEEEEEEEcCCCeEEEEEC-CeEEECCCCccc
Confidence 333334578999999999999986 357999998864 566677888 589999999885
No 52
>PRK07512 L-aspartate oxidase; Provisional
Probab=97.92 E-value=4.3e-05 Score=89.75 Aligned_cols=53 Identities=25% Similarity=0.388 Sum_probs=43.5
Q ss_pred ccCCCCeEEEccceEeEEEEcCCCCeEEEEEEEECCeEEEEEeccEEEEccCCcCc
Q psy1205 513 IISRNNLHILLNTTVTRVIVDPLTKAAIGVEFLTNGRLERLQAKNEVIVCAGAVDS 568 (868)
Q Consensus 513 ~~~~~nl~I~~~~~V~rIl~d~~~~~a~GV~~~~~g~~~~v~A~k~VILAAGai~S 568 (868)
+.++++++|+.++.|++|+.+ +++++||.+..++...+++|+ .||||+|+++.
T Consensus 146 ~~~~~gV~i~~~~~v~~Li~~--~g~v~Gv~~~~~~~~~~i~Ak-~VVLATGG~~~ 198 (513)
T PRK07512 146 VRATPSITVLEGAEARRLLVD--DGAVAGVLAATAGGPVVLPAR-AVVLATGGIGG 198 (513)
T ss_pred HHhCCCCEEEECcChhheeec--CCEEEEEEEEeCCeEEEEECC-EEEEcCCCCcC
Confidence 334568999999999999876 579999988776666678885 89999999874
No 53
>TIGR00551 nadB L-aspartate oxidase. L-aspartate oxidase is the B protein, NadB, of the quinolinate synthetase complex. Quinolinate synthetase makes a precursor of the pyridine nucleotide portion of NAD. This model identifies proteins that cluster as L-aspartate oxidase (a flavoprotein difficult to separate from the set of closely related flavoprotein subunits of succinate dehydrogenase and fumarate reductase) by both UPGMA and neighbor-joining trees. The most distant protein accepted as an L-aspartate oxidase (NadB), that from Pyrococcus horikoshii, not only clusters with other NadB but is just one gene away from NadA.
Probab=97.90 E-value=5.5e-05 Score=88.44 Aligned_cols=50 Identities=18% Similarity=0.373 Sum_probs=42.4
Q ss_pred CCCeEEEccceEeEEEEcCCCCeEEEEEEEECCeEEEEEeccEEEEccCCcCc
Q psy1205 516 RNNLHILLNTTVTRVIVDPLTKAAIGVEFLTNGRLERLQAKNEVIVCAGAVDS 568 (868)
Q Consensus 516 ~~nl~I~~~~~V~rIl~d~~~~~a~GV~~~~~g~~~~v~A~k~VILAAGai~S 568 (868)
.+|++|+.++.|++|+.+ ++++.||.+...+....++| |.||||+|++..
T Consensus 141 ~~gi~i~~~~~v~~l~~~--~g~v~Gv~~~~~~~~~~i~A-~~VVlAtGG~~~ 190 (488)
T TIGR00551 141 HPNIRIIEGENALDLLIE--TGRVVGVWVWNRETVETCHA-DAVVLATGGAGK 190 (488)
T ss_pred cCCcEEEECeEeeeeecc--CCEEEEEEEEECCcEEEEEc-CEEEECCCcccC
Confidence 479999999999999886 57899998876665667888 489999999875
No 54
>PRK09077 L-aspartate oxidase; Provisional
Probab=97.87 E-value=7.9e-05 Score=88.07 Aligned_cols=55 Identities=18% Similarity=0.332 Sum_probs=45.0
Q ss_pred ccCCCCeEEEccceEeEEEEcC----CCCeEEEEEEEE--CCeEEEEEeccEEEEccCCcCc
Q psy1205 513 IISRNNLHILLNTTVTRVIVDP----LTKAAIGVEFLT--NGRLERLQAKNEVIVCAGAVDS 568 (868)
Q Consensus 513 ~~~~~nl~I~~~~~V~rIl~d~----~~~~a~GV~~~~--~g~~~~v~A~k~VILAAGai~S 568 (868)
+.+.+|++|+.++.|++|+.++ ++++++||.+.+ +++.+.|+| |.||||+|++..
T Consensus 148 ~~~~~~I~v~~~~~v~~Li~~~~~~~~~g~v~Gv~~~~~~~g~~~~i~A-k~VVlATGG~~~ 208 (536)
T PRK09077 148 ARNHPNITVLERHNAIDLITSDKLGLPGRRVVGAYVLNRNKERVETIRA-KFVVLATGGASK 208 (536)
T ss_pred HHhCCCcEEEeeEEeeeeeecccccCCCCEEEEEEEEECCCCcEEEEec-CeEEECCCCCCC
Confidence 4456799999999999999863 247999999865 577788888 589999999974
No 55
>PRK06069 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=97.86 E-value=5.5e-05 Score=90.27 Aligned_cols=53 Identities=26% Similarity=0.396 Sum_probs=43.4
Q ss_pred ccCCCCeEEEccceEeEEEEcCCCCeEEEEEEEE--CCeEEEEEeccEEEEccCCcCc
Q psy1205 513 IISRNNLHILLNTTVTRVIVDPLTKAAIGVEFLT--NGRLERLQAKNEVIVCAGAVDS 568 (868)
Q Consensus 513 ~~~~~nl~I~~~~~V~rIl~d~~~~~a~GV~~~~--~g~~~~v~A~k~VILAAGai~S 568 (868)
+.+..+++|+.++.|++|+.+ +++++||.+.. +++.+.++|+ .||||+|++..
T Consensus 147 ~~~~~gv~i~~~~~v~~Li~~--~g~v~Gv~~~~~~~g~~~~i~Ak-~VIlATGG~~~ 201 (577)
T PRK06069 147 ALRFDNIHFYDEHFVTSLIVE--NGVFKGVTAIDLKRGEFKVFQAK-AGIIATGGAGR 201 (577)
T ss_pred HHhcCCCEEEECCEEEEEEEE--CCEEEEEEEEEcCCCeEEEEECC-cEEEcCchhcc
Confidence 334478999999999999987 57999998764 6666788885 89999999864
No 56
>PRK07803 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=97.84 E-value=3.1e-05 Score=92.91 Aligned_cols=49 Identities=18% Similarity=0.339 Sum_probs=41.4
Q ss_pred CeEEEccceEeEEEEcCCCCeEEEEEEEE--CCeEEEEEeccEEEEccCCcCch
Q psy1205 518 NLHILLNTTVTRVIVDPLTKAAIGVEFLT--NGRLERLQAKNEVIVCAGAVDSP 569 (868)
Q Consensus 518 nl~I~~~~~V~rIl~d~~~~~a~GV~~~~--~g~~~~v~A~k~VILAAGai~SP 569 (868)
|++|+.++.|++|+.+ ++++.||.+.. +++.+.++|+ .||||+|+++..
T Consensus 165 ~v~i~~~~~v~~L~~~--~g~v~Gv~~~~~~~g~~~~i~Ak-~VVlATGG~~~~ 215 (626)
T PRK07803 165 RIKVFAECTITELLKD--GGRIAGAFGYWRESGRFVLFEAP-AVVLATGGIGKS 215 (626)
T ss_pred ceEEEeCCEEEEEEEE--CCEEEEEEEEECCCCeEEEEEcC-eEEECCCcccCC
Confidence 3999999999999987 57999998754 6777788995 899999998753
No 57
>PRK08071 L-aspartate oxidase; Provisional
Probab=97.82 E-value=0.0001 Score=86.41 Aligned_cols=49 Identities=22% Similarity=0.423 Sum_probs=42.1
Q ss_pred CCeEEEccceEeEEEEcCCCCeEEEEEEEE-CCeEEEEEeccEEEEccCCcCc
Q psy1205 517 NNLHILLNTTVTRVIVDPLTKAAIGVEFLT-NGRLERLQAKNEVIVCAGAVDS 568 (868)
Q Consensus 517 ~nl~I~~~~~V~rIl~d~~~~~a~GV~~~~-~g~~~~v~A~k~VILAAGai~S 568 (868)
.+++|+.++.|++|+.+ ++++.||.+.+ +++.+.++| |.||||+|++..
T Consensus 142 ~gV~i~~~~~v~~Li~~--~g~v~Gv~~~~~~g~~~~i~A-k~VVlATGG~~~ 191 (510)
T PRK08071 142 PHVTVVEQEMVIDLIIE--NGRCIGVLTKDSEGKLKRYYA-DYVVLASGGCGG 191 (510)
T ss_pred cCCEEEECeEhhheeec--CCEEEEEEEEECCCcEEEEEc-CeEEEecCCCcc
Confidence 68999999999999876 67999998876 566678888 489999999885
No 58
>TIGR02485 CobZ_N-term precorrin 3B synthase CobZ. CobZ is essential for cobalamin biosynthesis (by knockout of the R. capsulatus gene ) and is complemented by the characterized precorrin 3B synthase CobG. The enzyme has been shown to contain flavin, heme and Fe-S cluster cofactors and is believed to require dioxygen as a substrate. This model identifies the N-terminal portion of the R. capsulatus gene which, in other species exists as a separate protein. The C-terminal portion is homologous to the 2-component signal transduction system protein CitB (TIGR02484).
Probab=97.79 E-value=0.00012 Score=84.27 Aligned_cols=62 Identities=19% Similarity=0.233 Sum_probs=46.2
Q ss_pred hhhccCCCCeEEEccceEeEEEEcCCCCeEEEEEEEECCeEEEEEeccEEEEccCCcCchHHHHh
Q psy1205 510 LRPIISRNNLHILLNTTVTRVIVDPLTKAAIGVEFLTNGRLERLQAKNEVIVCAGAVDSPRILLL 574 (868)
Q Consensus 510 L~~~~~~~nl~I~~~~~V~rIl~d~~~~~a~GV~~~~~g~~~~v~A~k~VILAAGai~SP~LLl~ 574 (868)
|....++.+++|++++.|++|+.++++++++||....++ .+++| |.||||+|+++..+=++.
T Consensus 129 L~~~a~~~Gv~i~~~~~v~~l~~~~~~g~v~gv~~~~~~--~~i~a-k~VIlAtGG~~~n~~~~~ 190 (432)
T TIGR02485 129 LYSSAERLGVEIRYGIAVDRIPPEAFDGAHDGPLTTVGT--HRITT-QALVLAAGGLGANRDWLR 190 (432)
T ss_pred HHHHHHHcCCEEEeCCEEEEEEecCCCCeEEEEEEcCCc--EEEEc-CEEEEcCCCcccCHHHHH
Confidence 444446678999999999999886335789998764333 56778 589999999987665443
No 59
>PRK08205 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=97.77 E-value=0.00018 Score=85.83 Aligned_cols=59 Identities=15% Similarity=0.223 Sum_probs=46.3
Q ss_pred hhhhccCCCCeEEEccceEeEEEEcCC--CCeEEEEEEEE--CCeEEEEEeccEEEEccCCcCc
Q psy1205 509 FLRPIISRNNLHILLNTTVTRVIVDPL--TKAAIGVEFLT--NGRLERLQAKNEVIVCAGAVDS 568 (868)
Q Consensus 509 ~L~~~~~~~nl~I~~~~~V~rIl~d~~--~~~a~GV~~~~--~g~~~~v~A~k~VILAAGai~S 568 (868)
.|....++.|++|+.++.|++|+.+++ ++++.||.+.. +++.+.++| |.||||+|++..
T Consensus 145 ~L~~~~~~~gv~i~~~~~v~~Li~~~~~~~g~v~Gv~~~~~~~g~~~~i~A-kaVVLATGG~~~ 207 (583)
T PRK08205 145 TLYQNCVKHGVEFFNEFYVLDLLLTETPSGPVAAGVVAYELATGEIHVFHA-KAVVFATGGSGR 207 (583)
T ss_pred HHHHHHHhcCCEEEeCCEEEEEEecCCccCCcEEEEEEEEcCCCeEEEEEe-CeEEECCCCCcc
Confidence 344444567899999999999998731 27999998754 676778889 589999999874
No 60
>PRK08275 putative oxidoreductase; Provisional
Probab=97.70 E-value=0.00026 Score=84.10 Aligned_cols=59 Identities=24% Similarity=0.357 Sum_probs=45.9
Q ss_pred hhhhhccCCCCeEEEccceEeEEEEcCCCCeEEEEEEEE--CCeEEEEEeccEEEEccCCcCc
Q psy1205 508 AFLRPIISRNNLHILLNTTVTRVIVDPLTKAAIGVEFLT--NGRLERLQAKNEVIVCAGAVDS 568 (868)
Q Consensus 508 ~~L~~~~~~~nl~I~~~~~V~rIl~d~~~~~a~GV~~~~--~g~~~~v~A~k~VILAAGai~S 568 (868)
..|....++.|++|+.++.|++|+.++ ++++.||.+.+ ++....++| |.||||+|++..
T Consensus 141 ~~L~~~~~~~gv~i~~~~~v~~Li~~~-~g~v~Gv~~~~~~~g~~~~i~A-k~VIlATGG~~~ 201 (554)
T PRK08275 141 KVLYRQLKRARVLITNRIMATRLLTDA-DGRVAGALGFDCRTGEFLVIRA-KAVILCCGAAGR 201 (554)
T ss_pred HHHHHHHHHCCCEEEcceEEEEEEEcC-CCeEEEEEEEecCCCcEEEEEC-CEEEECCCCccc
Confidence 344444456799999999999999863 46899998754 666677888 489999999863
No 61
>PRK11101 glpA sn-glycerol-3-phosphate dehydrogenase subunit A; Provisional
Probab=97.68 E-value=0.00024 Score=84.20 Aligned_cols=196 Identities=17% Similarity=0.192 Sum_probs=106.4
Q ss_pred CCccccCCCcchhhhhhhhhcccccchhhhhhhhhhccccCcccccccccccccccCCCcceeechhHHhhhccccCCh-
Q psy1205 329 MPAVTSGSAPLGGIQALRITRQDLVRWDQHLILALSCHRNSKSMVWTGSVLWTAVSCLLSPVLGGTSVLNGMMYIRGSR- 407 (868)
Q Consensus 329 ~p~~~~g~~~~g~~~a~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~lGGsS~in~~~~~r~~~- 407 (868)
+..+++|.|.+|+.+|+.|++.|+ ++.++|+.+ .-+|+|..|.++..-+.+
T Consensus 7 ~DVvIIGGGi~G~~iA~~La~rG~----~V~LlEk~d------------------------~~~GaS~~~~gllh~g~ry 58 (546)
T PRK11101 7 TDVIIIGGGATGAGIARDCALRGL----RCILVERHD------------------------IATGATGRNHGLLHSGARY 58 (546)
T ss_pred ccEEEECcCHHHHHHHHHHHHcCC----eEEEEECCC------------------------CCCCcccccccceeccchh
Confidence 456889999999999999999998 688888876 334555555554432211
Q ss_pred --HHHHHHHHcCCCCCChhchHHHHHHhccCCCCCCCCCCccCCCcceeeccCCCCChhHHHHHHHHHHCCCCCC-----
Q psy1205 408 --ADYDNWAKAGNPGWSYQDVLPYFLKSEDNQQATMMDQGFHGVGGYLTVTQFPYHPPLSHSILQGAMELGMPVR----- 480 (868)
Q Consensus 408 --~df~~W~~~G~~~Ws~~~l~pyy~k~e~~~~~~~~~~~~~g~~Gp~~~~~~~~~~~~~~~~~~a~~~lG~~~~----- 480 (868)
.++..... ..++ ...+.+..... ....++ +.+............+.+.+.+.|++..
T Consensus 59 ~~~~~~~~~~------~~~e-~~~l~~~a~~~--------~~~~g~-l~~~~~~~~~~~~~~~~~~~~~~Gi~~~~l~~~ 122 (546)
T PRK11101 59 AVTDAESARE------CISE-NQILKRIARHC--------VEPTDG-LFITLPEDDLAFQATFIRACEEAGIEAEAIDPQ 122 (546)
T ss_pred cccCHHHHHH------HHHH-HHHHHHhchHh--------hcccCC-ceEEeccccHHHHHHHHHHHHHcCCCcEEECHH
Confidence 11211110 0000 01111111100 001111 2221111112233445566677787531
Q ss_pred -------CCCCCCcceeeeeeccCCCCcccchhhhhhhhccCCCCeEEEccceEeEEEEcCCCCeEEEEEEEE--CCeEE
Q psy1205 481 -------DLNGVSHTGFMIAQTTTRNGSRLSTSKAFLRPIISRNNLHILLNTTVTRVIVDPLTKAAIGVEFLT--NGRLE 551 (868)
Q Consensus 481 -------~~n~~~~~G~~~~~~~~~~g~R~s~~~~~L~~~~~~~nl~I~~~~~V~rIl~d~~~~~a~GV~~~~--~g~~~ 551 (868)
.++ ....|......+.-+..|. ..+++.. +.+.+++|++++.|+.|..+ +++++||++.+ +++..
T Consensus 123 e~~~~eP~l~-~~~~ga~~~~dg~vdp~rl--~~al~~~-A~~~Ga~i~~~t~V~~i~~~--~~~v~gv~v~d~~~g~~~ 196 (546)
T PRK11101 123 QALILEPAVN-PALIGAVKVPDGTVDPFRL--TAANMLD-AKEHGAQILTYHEVTGLIRE--GDTVCGVRVRDHLTGETQ 196 (546)
T ss_pred HHHHhCCCcC-ccceEEEEecCcEECHHHH--HHHHHHH-HHhCCCEEEeccEEEEEEEc--CCeEEEEEEEEcCCCcEE
Confidence 111 1112222222122222222 1223333 34568999999999999886 67899999865 46667
Q ss_pred EEEeccEEEEccCCcCchHHHHhcC
Q psy1205 552 RLQAKNEVIVCAGAVDSPRILLLSG 576 (868)
Q Consensus 552 ~v~A~k~VILAAGai~SP~LLl~SG 576 (868)
+|+|+ .||+|||+. +.+|+...|
T Consensus 197 ~i~A~-~VVnAaG~w-a~~l~~~~g 219 (546)
T PRK11101 197 EIHAP-VVVNAAGIW-GQHIAEYAD 219 (546)
T ss_pred EEECC-EEEECCChh-HHHHHHhcC
Confidence 89996 799999975 677776554
No 62
>PRK06854 adenylylsulfate reductase subunit alpha; Validated
Probab=97.59 E-value=0.0004 Score=83.17 Aligned_cols=50 Identities=20% Similarity=0.287 Sum_probs=41.2
Q ss_pred CCCCeEEEccceEeEEEEcCCCCeEEEEEEEE--CCeEEEEEeccEEEEccCCcC
Q psy1205 515 SRNNLHILLNTTVTRVIVDPLTKAAIGVEFLT--NGRLERLQAKNEVIVCAGAVD 567 (868)
Q Consensus 515 ~~~nl~I~~~~~V~rIl~d~~~~~a~GV~~~~--~g~~~~v~A~k~VILAAGai~ 567 (868)
+..|++|+.++.|++|+.+ +++++||.+.. +++...++| |.||||+|++.
T Consensus 144 ~~ggV~i~~~~~v~~Li~~--~g~v~Gv~~~~~~~g~~~~i~A-kaVILATGG~~ 195 (608)
T PRK06854 144 KALGDNVLNRVFITDLLVD--DNRIAGAVGFSVRENKFYVFKA-KAVIVATGGAA 195 (608)
T ss_pred hcCCCEEEeCCEEEEEEEe--CCEEEEEEEEEccCCcEEEEEC-CEEEECCCchh
Confidence 4456999999999999987 57999997643 566678888 48999999986
No 63
>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1.1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....
Probab=97.59 E-value=6e-05 Score=83.96 Aligned_cols=193 Identities=22% Similarity=0.267 Sum_probs=101.5
Q ss_pred cccCCCcchhhhhhhhhcccccchhhhhhhhhhccccCcccccccccccccccCCCcceeechhHHhhhccccCC--hH-
Q psy1205 332 VTSGSAPLGGIQALRITRQDLVRWDQHLILALSCHRNSKSMVWTGSVLWTAVSCLLSPVLGGTSVLNGMMYIRGS--RA- 408 (868)
Q Consensus 332 ~~~g~~~~g~~~a~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~lGGsS~in~~~~~r~~--~~- 408 (868)
+++|+|..|+.+|+.|++.|. ++.++|+.. .-+|.|..+++++.... ..
T Consensus 3 vIIGaGi~G~~~A~~La~~G~----~V~l~e~~~------------------------~~~~aS~~~~g~~~~~~~~~~~ 54 (358)
T PF01266_consen 3 VIIGAGIAGLSTAYELARRGH----SVTLLERGD------------------------IGSGASGRSGGLVRPGISSYPD 54 (358)
T ss_dssp EEECTSHHHHHHHHHHHHTTS----EEEEEESSS------------------------TTSSGGGSSSEEEECSGSHHSS
T ss_pred EEECcCHHHHHHHHHHHHCCC----eEEEEeecc------------------------cccccccccccccccccccccc
Confidence 579999999999999999997 577777775 44566777766665551 11
Q ss_pred -HHHHHHHcCCCCCChhchHHHHHHhccCCCCCCCCCCccCCCcceeeccCCCCChhHHHHHHHHHHCCCCCC-------
Q psy1205 409 -DYDNWAKAGNPGWSYQDVLPYFLKSEDNQQATMMDQGFHGVGGYLTVTQFPYHPPLSHSILQGAMELGMPVR------- 480 (868)
Q Consensus 409 -df~~W~~~G~~~Ws~~~l~pyy~k~e~~~~~~~~~~~~~g~~Gp~~~~~~~~~~~~~~~~~~a~~~lG~~~~------- 480 (868)
.+.... .+-..++++.....+.. ..++ ..|-+.+..........+.+.+.+++.|++..
T Consensus 55 ~~~~~l~---------~~~~~~~~~~~~~~~~~---~~~~-~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 121 (358)
T PF01266_consen 55 PQYARLA---------RESVEFWRELAEEYGIP---VGFR-PCGSLYLAEDEEDAESLERLLDRLRRNGIPYELLSPEEL 121 (358)
T ss_dssp HHHHHHH---------HHHHHHHHHHHHHTTSS---CEEE-ECEEEEEESSHHHHHHHHHHHHHHHHTTTTEEEEEHHHH
T ss_pred ccccchh---------hhhccchhhhhhhcCcc---cccc-cccccccccchhhhhhccccccccccccccccccchhhh
Confidence 111111 12222333332211111 0010 11223222111111223455666777777430
Q ss_pred -----CCCCCCcceeeeeeccCCCCcccchhhhhhhhccCCCCeEEEccceEeEEEEcCCCCeEEEEEEEECCeEEEEEe
Q psy1205 481 -----DLNGVSHTGFMIAQTTTRNGSRLSTSKAFLRPIISRNNLHILLNTTVTRVIVDPLTKAAIGVEFLTNGRLERLQA 555 (868)
Q Consensus 481 -----~~n~~~~~G~~~~~~~~~~g~R~s~~~~~L~~~~~~~nl~I~~~~~V~rIl~d~~~~~a~GV~~~~~g~~~~v~A 555 (868)
.++.....+........-+.. .....|....++.|++|+++++|++|..+ +++++||+. .+| +++|
T Consensus 122 ~~~~p~~~~~~~~~~~~~~~g~i~~~---~l~~~l~~~~~~~Gv~i~~~~~V~~i~~~--~~~v~gv~~-~~g---~i~a 192 (358)
T PF01266_consen 122 RELFPFLNPRIEGGVFFPEGGVIDPR---RLIQALAAEAQRAGVEIRTGTEVTSIDVD--GGRVTGVRT-SDG---EIRA 192 (358)
T ss_dssp HHHSTTSSTTTEEEEEETTEEEEEHH---HHHHHHHHHHHHTT-EEEESEEEEEEEEE--TTEEEEEEE-TTE---EEEE
T ss_pred hhhhcccccchhhhhccccccccccc---chhhhhHHHHHHhhhhccccccccchhhc--ccccccccc-ccc---cccc
Confidence 122111112211111111111 12233333445568999999999999998 678888764 233 3788
Q ss_pred ccEEEEccCCcCchHHHHhcC
Q psy1205 556 KNEVIVCAGAVDSPRILLLSG 576 (868)
Q Consensus 556 ~k~VILAAGai~SP~LLl~SG 576 (868)
+ .||+|+|+ .|++|+-.+|
T Consensus 193 d-~vV~a~G~-~s~~l~~~~~ 211 (358)
T PF01266_consen 193 D-RVVLAAGA-WSPQLLPLLG 211 (358)
T ss_dssp C-EEEE--GG-GHHHHHHTTT
T ss_pred c-eeEecccc-cceeeeeccc
Confidence 5 79999996 6888887775
No 64
>TIGR02061 aprA adenosine phosphosulphate reductase, alpha subunit. During dissimilatory sulfate reduction or sulfur oxidation, adenylylsulfate (APS) reductase catalyzes reversibly the two-electron reduction of APS to sulfite and AMP. Found in several bacterial lineages and in Archaeoglobales, APS reductase is a heterodimer composed of an alpha subunit containing a noncovalently bound FAD, and a beta subunit containing two [4Fe-4S] clusters. Described by this model is the alpha subunit of APS reductase, sharing common evolutionary origin with fumarate reductase/succinate dehydrogenase flavoproteins.
Probab=97.52 E-value=0.00058 Score=81.35 Aligned_cols=51 Identities=18% Similarity=0.218 Sum_probs=41.7
Q ss_pred CCCeEEEccceEeEEEEcCC-CCeEEEEEEEE--CCeEEEEEeccEEEEccCCcC
Q psy1205 516 RNNLHILLNTTVTRVIVDPL-TKAAIGVEFLT--NGRLERLQAKNEVIVCAGAVD 567 (868)
Q Consensus 516 ~~nl~I~~~~~V~rIl~d~~-~~~a~GV~~~~--~g~~~~v~A~k~VILAAGai~ 567 (868)
..+++|+.++.|++|+.+++ ++++.||.+.. +++.+.++| |.||||+|++.
T Consensus 138 ~~~~~i~~~~~v~~Ll~d~~~~GrV~Gv~~~~~~~g~~~~i~A-kaVVLATGG~~ 191 (614)
T TIGR02061 138 NALGDIFERIFIVKLLLDKNTPNRIAGAVGFNVRANEVHVFKA-KTVIVAAGGAV 191 (614)
T ss_pred hCCCeEEcccEEEEEEecCCCCCeEEEEEEEEeCCCcEEEEEC-CEEEECCCccc
Confidence 34579999999999998732 27999998754 677788898 48999999986
No 65
>PRK05675 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=97.52 E-value=0.00033 Score=83.35 Aligned_cols=58 Identities=16% Similarity=0.190 Sum_probs=47.4
Q ss_pred hhhhccCCCCeEEEccceEeEEEEcCCCCeEEEEEEEE--CCeEEEEEeccEEEEccCCcCc
Q psy1205 509 FLRPIISRNNLHILLNTTVTRVIVDPLTKAAIGVEFLT--NGRLERLQAKNEVIVCAGAVDS 568 (868)
Q Consensus 509 ~L~~~~~~~nl~I~~~~~V~rIl~d~~~~~a~GV~~~~--~g~~~~v~A~k~VILAAGai~S 568 (868)
.|.....+.+++|+.++.+++|+.+ ++++++||.+.+ +|+.+.++|+ .||||+|+++.
T Consensus 131 ~L~~~~~~~gi~i~~~~~~~~Li~~-~~g~v~Gv~~~~~~~g~~~~i~Ak-aVVLATGG~~~ 190 (570)
T PRK05675 131 TLYQGNLKNGTTFLNEWYAVDLVKN-QDGAVVGVIAICIETGETVYIKSK-ATVLATGGAGR 190 (570)
T ss_pred HHHHHHhccCCEEEECcEEEEEEEc-CCCeEEEEEEEEcCCCcEEEEecC-eEEECCCCccc
Confidence 3444445679999999999999986 358999999864 7888889995 89999999985
No 66
>COG0029 NadB Aspartate oxidase [Coenzyme metabolism]
Probab=97.50 E-value=0.00013 Score=81.28 Aligned_cols=98 Identities=21% Similarity=0.381 Sum_probs=61.9
Q ss_pred HHHHHHHHCCCCC-CCCCCC----CcceeeeeeccCCCCcccch-hhhhhhhccCCCCeEEEccceEeEEEEcCCCC-eE
Q psy1205 467 SILQGAMELGMPV-RDLNGV----SHTGFMIAQTTTRNGSRLST-SKAFLRPIISRNNLHILLNTTVTRVIVDPLTK-AA 539 (868)
Q Consensus 467 ~~~~a~~~lG~~~-~~~n~~----~~~G~~~~~~~~~~g~R~s~-~~~~L~~~~~~~nl~I~~~~~V~rIl~d~~~~-~a 539 (868)
..++.+.+.|+++ .+..+. ...|++........+.-... ..+.+..+.+++|++|+.++.+.+|+.+ ++ .+
T Consensus 91 ~ai~~Li~~Gv~FDr~~~g~~~lt~EggHS~rRIlH~~~~TG~~I~~~L~~~v~~~p~I~v~e~~~a~~li~~--~~~~~ 168 (518)
T COG0029 91 EAIEWLIDLGVPFDRDEDGRLHLTREGGHSRRRILHAADATGKEIMTALLKKVRNRPNITVLEGAEALDLIIE--DGIGV 168 (518)
T ss_pred HHHHHHHHcCCCCcCCCCCceeeeeecccCCceEEEecCCccHHHHHHHHHHHhcCCCcEEEecchhhhhhhc--CCceE
Confidence 4455666789998 333231 12333332211111221222 2334445566799999999999999998 45 55
Q ss_pred EEEEEEECC-eEEEEEeccEEEEccCCcC
Q psy1205 540 IGVEFLTNG-RLERLQAKNEVIVCAGAVD 567 (868)
Q Consensus 540 ~GV~~~~~g-~~~~v~A~k~VILAAGai~ 567 (868)
.||.+...+ +..+++|+ .||||+|+++
T Consensus 169 ~Gv~~~~~~~~~~~~~a~-~vVLATGG~g 196 (518)
T COG0029 169 AGVLVLNRNGELGTFRAK-AVVLATGGLG 196 (518)
T ss_pred eEEEEecCCCeEEEEecC-eEEEecCCCc
Confidence 599987754 57888995 8999999875
No 67
>PRK08401 L-aspartate oxidase; Provisional
Probab=97.42 E-value=0.00084 Score=78.04 Aligned_cols=52 Identities=13% Similarity=0.257 Sum_probs=38.6
Q ss_pred hhhhccCCCCeEEEccceEeEEEEcCCCCeEEEEEEEECCeEEEEEeccEEEEccCCcCc
Q psy1205 509 FLRPIISRNNLHILLNTTVTRVIVDPLTKAAIGVEFLTNGRLERLQAKNEVIVCAGAVDS 568 (868)
Q Consensus 509 ~L~~~~~~~nl~I~~~~~V~rIl~d~~~~~a~GV~~~~~g~~~~v~A~k~VILAAGai~S 568 (868)
.|....++.+++++.. .|++|+.+ +++++||.. ++. .++|+ .||||+|++..
T Consensus 125 ~L~~~~~~~gv~i~~~-~v~~l~~~--~g~v~Gv~~--~g~--~i~a~-~VVLATGG~~~ 176 (466)
T PRK08401 125 ILYKHARELGVNFIRG-FAEELAIK--NGKAYGVFL--DGE--LLKFD-ATVIATGGFSG 176 (466)
T ss_pred HHHHHHHhcCCEEEEe-EeEEEEee--CCEEEEEEE--CCE--EEEeC-eEEECCCcCcC
Confidence 3444445678999876 89998775 578889875 343 57785 79999999876
No 68
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=97.33 E-value=0.002 Score=80.83 Aligned_cols=49 Identities=22% Similarity=0.363 Sum_probs=42.1
Q ss_pred CCeEEEccceEeEEEEcCCCCeEEEEEEEE--CCeEEEEEeccEEEEccCCcCc
Q psy1205 517 NNLHILLNTTVTRVIVDPLTKAAIGVEFLT--NGRLERLQAKNEVIVCAGAVDS 568 (868)
Q Consensus 517 ~nl~I~~~~~V~rIl~d~~~~~a~GV~~~~--~g~~~~v~A~k~VILAAGai~S 568 (868)
.++++.+++.+++|+.+ ++++.||.+.+ +|+.+.++| |.||||+|+++.
T Consensus 156 ~~i~~~~~~~~~~Li~~--~g~v~Gv~~~~~~~g~~~~i~A-kaVILATGG~g~ 206 (897)
T PRK13800 156 ERIRIENRLMPVRVLTE--GGRAVGAAALNTRTGEFVTVGA-KAVILATGPCGR 206 (897)
T ss_pred CCcEEEeceeeEEEEee--CCEEEEEEEEecCCCcEEEEEC-CEEEECCCcccc
Confidence 48999999999999987 68999998765 687888888 589999999873
No 69
>COG1053 SdhA Succinate dehydrogenase/fumarate reductase, flavoprotein subunit [Energy production and conversion]
Probab=97.27 E-value=0.00073 Score=79.38 Aligned_cols=130 Identities=18% Similarity=0.233 Sum_probs=74.8
Q ss_pred HHHHHHCCCCC-CCCCC----CCcceeeeeeccCCCCcccch-hhhhh-hhccCCCCeEEEccceEeEEEEcCCCCeEEE
Q psy1205 469 LQGAMELGMPV-RDLNG----VSHTGFMIAQTTTRNGSRLST-SKAFL-RPIISRNNLHILLNTTVTRVIVDPLTKAAIG 541 (868)
Q Consensus 469 ~~a~~~lG~~~-~~~n~----~~~~G~~~~~~~~~~g~R~s~-~~~~L-~~~~~~~nl~I~~~~~V~rIl~d~~~~~a~G 541 (868)
+..+++.|.++ ....| +...|.+.. .+|..+.+... ....| ....+..+++|+.+..|++|+.++ ++.+.|
T Consensus 98 v~~Le~~G~~f~r~~~G~~~~r~fgg~~~~-rt~~~~~~tG~~ll~~L~~~~~~~~~~~~~~~~~~~~l~~~~-~~~v~G 175 (562)
T COG1053 98 VDELEKWGVPFSRTEDGRIYQRRFGGHSKP-RTCFAADKTGHELLHTLYEQLLKFSGIEIFDEYFVLDLLVDD-GGGVAG 175 (562)
T ss_pred HHHHHHhCCCcccCCCccccccccCCcCCC-cceecCCCCcHHHHHHHHHHHHHhhcchhhhhhhhhhheecC-CCcEEE
Confidence 33445678776 22222 334444422 23333433222 22222 233344778999999999999883 344889
Q ss_pred EEEEE--CCeEEEEEeccEEEEccCCcC-----chHHHHhcCCCChhhhhhcCCCcccCCCCCcccccccccc
Q psy1205 542 VEFLT--NGRLERLQAKNEVIVCAGAVD-----SPRILLLSGIGPREELRRLNIAPIHDLPGVGKNLHNHVAH 607 (868)
Q Consensus 542 V~~~~--~g~~~~v~A~k~VILAAGai~-----SP~LLl~SGIGp~~~L~~~gI~~~~dlp~VG~nL~dH~~~ 607 (868)
|.... +++.+.++| |.||||+|+.+ |+......|-|- .-.-+.|.+ ..|+ ++.|-||..
T Consensus 176 vv~~~~~~g~~~~~~a-kavilaTGG~g~~~~~~t~~~~~tGdG~-~ma~~aGa~-l~dm----e~~Q~hpt~ 241 (562)
T COG1053 176 VVARDLRTGELYVFRA-KAVILATGGAGRLYPYTTNAHIGTGDGV-AMAYRAGAP-LIDM----EFVQFHPTG 241 (562)
T ss_pred EEEEEecCCcEEEEec-CcEEEccCCceEEEeccCCccccCCcHH-HHHHhcCCc-ccCC----Cccccccce
Confidence 88765 688888888 68999999999 444444432221 122345555 3333 366777754
No 70
>PRK13977 myosin-cross-reactive antigen; Provisional
Probab=97.22 E-value=0.00069 Score=78.67 Aligned_cols=55 Identities=18% Similarity=0.254 Sum_probs=45.3
Q ss_pred cCCCCeEEEccceEeEEEEcCCC--CeEEEEEEEE--CCeEEEEEeccEEEEccCCcCc
Q psy1205 514 ISRNNLHILLNTTVTRVIVDPLT--KAAIGVEFLT--NGRLERLQAKNEVIVCAGAVDS 568 (868)
Q Consensus 514 ~~~~nl~I~~~~~V~rIl~d~~~--~~a~GV~~~~--~g~~~~v~A~k~VILAAGai~S 568 (868)
++..|++++++++|++|+++.++ ++|+||++.. .++.+.+.+++.||++.|++.+
T Consensus 236 Le~~GV~f~~~t~VtdL~~~~d~~~~~VtgI~~~~~~~~~~I~l~~~DlVivTnGs~t~ 294 (576)
T PRK13977 236 LEDHGVDFQYGTKVTDIDFDITGGKKTATAIHLTRNGKEETIDLTEDDLVFVTNGSITE 294 (576)
T ss_pred HHhCCCEEEeCCEEEEEEEcCCCCceEEEEEEEEeCCceeEEEecCCCEEEEeCCcCcc
Confidence 45689999999999999996333 7999999987 4455677888999999999864
No 71
>TIGR01816 sdhA_forward succinate dehydrogenase, flavoprotein subunit, E. coli/mitochondrial subgroup. Succinate dehydrogenase and fumarate reductase are homologous enzymes reversible in principle but favored under different circumstances. This model represents a narrowly defined clade of the succinate dehydrogenase flavoprotein subunit as found in mitochondria, in Rickettsia, in E. coli and other Proteobacteria, and in a few other lineages. However, this model excludes all known fumarate reductases. It also excludes putative succinate dehydrogenases that appear to diverged before the split between E. coli succinate dehydrogenase and fumarate reductase.
Probab=97.17 E-value=0.001 Score=79.11 Aligned_cols=58 Identities=14% Similarity=0.222 Sum_probs=47.8
Q ss_pred hhhhhccCCCCeEEEccceEeEEEEcCCCCeEEEEEEEE--CCeEEEEEeccEEEEccCCcCc
Q psy1205 508 AFLRPIISRNNLHILLNTTVTRVIVDPLTKAAIGVEFLT--NGRLERLQAKNEVIVCAGAVDS 568 (868)
Q Consensus 508 ~~L~~~~~~~nl~I~~~~~V~rIl~d~~~~~a~GV~~~~--~g~~~~v~A~k~VILAAGai~S 568 (868)
..|.....+.+++|+.++.|++|+.+ +++++||.+.+ +|+.+.++| |.||||+|+++.
T Consensus 123 ~~L~~~~~~~gi~i~~~~~~~~Li~~--~g~v~Ga~~~~~~~g~~~~i~A-kaVILATGG~~~ 182 (565)
T TIGR01816 123 HTLYQQNLKADTSFFNEYFALDLLME--DGECRGVIAYCLETGEIHRFRA-KAVVLATGGYGR 182 (565)
T ss_pred HHHHHHHHhCCCEEEeccEEEEEEee--CCEEEEEEEEEcCCCcEEEEEe-CeEEECCCCccc
Confidence 33444445678999999999999986 68999998854 688888999 589999999985
No 72
>PTZ00058 glutathione reductase; Provisional
Probab=97.15 E-value=0.00034 Score=82.57 Aligned_cols=45 Identities=31% Similarity=0.508 Sum_probs=38.5
Q ss_pred CCCcceEEEECCCchhhhHHhhhhccCcccccccCCCCCcc-ccchhh
Q psy1205 58 PDRDYDFIVIGGGSSGAVVANRLSEMNTCNCPVTQPGPTLA-STCGGS 104 (868)
Q Consensus 58 ~~~~~d~~~~g~~~~~~~~a~~~~~~~~~~~LvlE~G~~LG-s~iN~~ 104 (868)
++.+||+||||+|+||..+|.++++. +.+|+|||++ .+| +|+|-+
T Consensus 45 ~~~~yDvvVIG~G~aG~~aA~~aa~~-G~~ValIEk~-~~GGtCln~G 90 (561)
T PTZ00058 45 PRMVYDLIVIGGGSGGMAAARRAARN-KAKVALVEKD-YLGGTCVNVG 90 (561)
T ss_pred CCccccEEEECcCHHHHHHHHHHHHc-CCeEEEEecc-cccccccccC
Confidence 44689999999999999999999986 7899999997 466 887733
No 73
>KOG2404|consensus
Probab=97.13 E-value=0.00025 Score=74.18 Aligned_cols=48 Identities=23% Similarity=0.488 Sum_probs=41.5
Q ss_pred CeEEEccceEeEEEEcCCCCeEEEEEEEE-CCeEEEEEeccEEEEccCCcCc
Q psy1205 518 NLHILLNTTVTRVIVDPLTKAAIGVEFLT-NGRLERLQAKNEVIVCAGAVDS 568 (868)
Q Consensus 518 nl~I~~~~~V~rIl~d~~~~~a~GV~~~~-~g~~~~v~A~k~VILAAGai~S 568 (868)
-++|+++++|++|+.+ ++++.||+|.+ +|+...+.+. .||||+|+|+-
T Consensus 159 ~~ki~~nskvv~il~n--~gkVsgVeymd~sgek~~~~~~-~VVlatGGf~y 207 (477)
T KOG2404|consen 159 LVKILLNSKVVDILRN--NGKVSGVEYMDASGEKSKIIGD-AVVLATGGFGY 207 (477)
T ss_pred HHhhhhcceeeeeecC--CCeEEEEEEEcCCCCccceecC-ceEEecCCcCc
Confidence 4899999999999954 89999999988 6777777775 79999999985
No 74
>COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion]
Probab=97.10 E-value=0.00026 Score=80.62 Aligned_cols=38 Identities=26% Similarity=0.571 Sum_probs=34.6
Q ss_pred CcceEEEECCCchhhhHHhhhhccCcccccccCCCCCcc
Q psy1205 60 RDYDFIVIGGGSSGAVVANRLSEMNTCNCPVTQPGPTLA 98 (868)
Q Consensus 60 ~~~d~~~~g~~~~~~~~a~~~~~~~~~~~LvlE~G~~LG 98 (868)
..||+||||+|+||+++|.+|++.. ++|||||++...|
T Consensus 2 ~~~DVvIVGaGPAGs~aA~~la~~G-~~VlvlEk~~~~G 39 (396)
T COG0644 2 MEYDVVIVGAGPAGSSAARRLAKAG-LDVLVLEKGSEPG 39 (396)
T ss_pred ceeeEEEECCchHHHHHHHHHHHcC-CeEEEEecCCCCC
Confidence 4699999999999999999999974 9999999998744
No 75
>PRK10157 putative oxidoreductase FixC; Provisional
Probab=97.10 E-value=0.00034 Score=80.44 Aligned_cols=38 Identities=26% Similarity=0.407 Sum_probs=34.8
Q ss_pred CcceEEEECCCchhhhHHhhhhccCcccccccCCCCCcc
Q psy1205 60 RDYDFIVIGGGSSGAVVANRLSEMNTCNCPVTQPGPTLA 98 (868)
Q Consensus 60 ~~~d~~~~g~~~~~~~~a~~~~~~~~~~~LvlE~G~~LG 98 (868)
+.||+||||||+||+++|..|++. +.+|+||||+...|
T Consensus 4 ~~~DViIVGaGpAG~~aA~~La~~-G~~V~llEr~~~~g 41 (428)
T PRK10157 4 DIFDAIIVGAGLAGSVAALVLARE-GAQVLVIERGNSAG 41 (428)
T ss_pred ccCcEEEECcCHHHHHHHHHHHhC-CCeEEEEEcCCCCC
Confidence 469999999999999999999986 78999999998766
No 76
>PF01946 Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K.
Probab=97.06 E-value=0.00021 Score=71.89 Aligned_cols=38 Identities=21% Similarity=0.373 Sum_probs=31.7
Q ss_pred CcceEEEECCCchhhhHHhhhhccCcccccccCCCCCcc
Q psy1205 60 RDYDFIVIGGGSSGAVVANRLSEMNTCNCPVTQPGPTLA 98 (868)
Q Consensus 60 ~~~d~~~~g~~~~~~~~a~~~~~~~~~~~LvlE~G~~LG 98 (868)
.+||+||||+|++|+++|..|++. ++||+|+||...+|
T Consensus 16 ~~~DV~IVGaGpaGl~aA~~La~~-g~kV~v~E~~~~~G 53 (230)
T PF01946_consen 16 LEYDVAIVGAGPAGLTAAYYLAKA-GLKVAVIERKLSPG 53 (230)
T ss_dssp TEESEEEE--SHHHHHHHHHHHHH-TS-EEEEESSSS-B
T ss_pred ccCCEEEECCChhHHHHHHHHHHC-CCeEEEEecCCCCC
Confidence 469999999999999999999987 89999999998876
No 77
>KOG1298|consensus
Probab=97.02 E-value=0.00077 Score=72.46 Aligned_cols=52 Identities=21% Similarity=0.309 Sum_probs=40.0
Q ss_pred ccCCCCeEEEccceEeEEEEcCCCCeEEEEEEEE-CCeEEEEEeccEEEEccCCcCc
Q psy1205 513 IISRNNLHILLNTTVTRVIVDPLTKAAIGVEFLT-NGRLERLQAKNEVIVCAGAVDS 568 (868)
Q Consensus 513 ~~~~~nl~I~~~~~V~rIl~d~~~~~a~GV~~~~-~g~~~~v~A~k~VILAAGai~S 568 (868)
+...+|+++..+ +|..|+-| .+.+.||++.. .|++.+..|. --|+|-|-|..
T Consensus 157 a~slpNV~~eeG-tV~sLlee--~gvvkGV~yk~k~gee~~~~Ap-LTvVCDGcfSn 209 (509)
T KOG1298|consen 157 AASLPNVRLEEG-TVKSLLEE--EGVVKGVTYKNKEGEEVEAFAP-LTVVCDGCFSN 209 (509)
T ss_pred HhcCCCeEEeee-eHHHHHhc--cCeEEeEEEecCCCceEEEecc-eEEEecchhHH
Confidence 345688887554 67887766 67999999987 6777888886 78999997754
No 78
>PRK12409 D-amino acid dehydrogenase small subunit; Provisional
Probab=96.98 E-value=0.0032 Score=71.97 Aligned_cols=57 Identities=19% Similarity=0.283 Sum_probs=37.4
Q ss_pred hccCCCCeEEEccceEeEEEEcCCCCeEEEEEEEECCe--EEEEEeccEEEEccCCcCchHHHH
Q psy1205 512 PIISRNNLHILLNTTVTRVIVDPLTKAAIGVEFLTNGR--LERLQAKNEVIVCAGAVDSPRILL 573 (868)
Q Consensus 512 ~~~~~~nl~I~~~~~V~rIl~d~~~~~a~GV~~~~~g~--~~~v~A~k~VILAAGai~SP~LLl 573 (868)
...++.+++|+.++.|++|..+ ++.++ |.+...+. ..+++|+ .||+|+|+. +++|+-
T Consensus 205 ~~a~~~G~~i~~~~~V~~i~~~--~~~~~-v~~~~~~~~~~~~i~a~-~vV~a~G~~-s~~l~~ 263 (410)
T PRK12409 205 AACARLGVQFRYGQEVTSIKTD--GGGVV-LTVQPSAEHPSRTLEFD-GVVVCAGVG-SRALAA 263 (410)
T ss_pred HHHHhCCCEEEcCCEEEEEEEe--CCEEE-EEEEcCCCCccceEecC-EEEECCCcC-hHHHHH
Confidence 4445679999999999999875 34432 33333221 3457885 799999965 455543
No 79
>PRK10015 oxidoreductase; Provisional
Probab=96.98 E-value=0.00039 Score=79.85 Aligned_cols=36 Identities=28% Similarity=0.487 Sum_probs=33.2
Q ss_pred CcceEEEECCCchhhhHHhhhhccCcccccccCCCCC
Q psy1205 60 RDYDFIVIGGGSSGAVVANRLSEMNTCNCPVTQPGPT 96 (868)
Q Consensus 60 ~~~d~~~~g~~~~~~~~a~~~~~~~~~~~LvlE~G~~ 96 (868)
..||+||||||+||+++|..|++. +.+|+||||+..
T Consensus 4 ~~~DViIVGgGpAG~~aA~~LA~~-G~~VlliEr~~~ 39 (429)
T PRK10015 4 DKFDAIVVGAGVAGSVAALVMARA-GLDVLVIERGDS 39 (429)
T ss_pred cccCEEEECcCHHHHHHHHHHHhC-CCeEEEEecCCC
Confidence 469999999999999999999986 789999999875
No 80
>COG0579 Predicted dehydrogenase [General function prediction only]
Probab=96.98 E-value=0.0068 Score=68.33 Aligned_cols=200 Identities=19% Similarity=0.140 Sum_probs=108.3
Q ss_pred CccccCCCcchhhhhhhhhcccccchhhhhhhhhhccccCcccccccccccccccCCCcceee-chhHHhhhccccCC--
Q psy1205 330 PAVTSGSAPLGGIQALRITRQDLVRWDQHLILALSCHRNSKSMVWTGSVLWTAVSCLLSPVLG-GTSVLNGMMYIRGS-- 406 (868)
Q Consensus 330 p~~~~g~~~~g~~~a~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~lG-GsS~in~~~~~r~~-- 406 (868)
-.+++|.|..|++.|..|++.+. -.++.++|+.+ .+| ++|..|.++-.-+-
T Consensus 5 DvvIIGgGI~G~a~a~~Ls~~~p--~~~V~llEk~~------------------------~~a~~sS~~NSgviHag~~y 58 (429)
T COG0579 5 DVVIIGGGIMGAATAYELSEYEP--DLSVALLEKED------------------------GVAQESSSNNSGVIHAGLYY 58 (429)
T ss_pred eEEEECCcHHHHHHHHHHHHhCC--CceEEEEEccC------------------------ccccccccCcccceeccccC
Confidence 45679999999999999999883 11577888877 444 45555555443321
Q ss_pred -hHHHHH-HHHcCCCCCChhchHHHHHHhccCCCCCCCCCCccCCCcceeeccCCCCChhHHHHHHHHHHCCCCC-C--C
Q psy1205 407 -RADYDN-WAKAGNPGWSYQDVLPYFLKSEDNQQATMMDQGFHGVGGYLTVTQFPYHPPLSHSILQGAMELGMPV-R--D 481 (868)
Q Consensus 407 -~~df~~-W~~~G~~~Ws~~~l~pyy~k~e~~~~~~~~~~~~~g~~Gp~~~~~~~~~~~~~~~~~~a~~~lG~~~-~--~ 481 (868)
+.++.. -...|+.-| ..+.++... ++. ..|.+.+......-+.-+.+.+.+.+.|+.. . |
T Consensus 59 ~p~slka~l~~~g~~~~-----~~~~kq~~~---------~f~-~~g~l~vA~~e~e~~~L~~l~~~~~~ngv~~~~~ld 123 (429)
T COG0579 59 TPGSLKAKLCVAGNINE-----FAICKQLGI---------PFI-NCGKLSVATGEEEVERLEKLYERGKANGVFDLEILD 123 (429)
T ss_pred CCcchhhHHHHHHHHHH-----HHHHHHhCC---------ccc-ccCeEEEEEChHHHHHHHHHHHHHhhCCCcceeecC
Confidence 111111 111122111 112222221 011 1244544443333344556667777778772 1 1
Q ss_pred ----------CCCCCcceeeeeeccCCCCcccchhhhhhhhccCCCCeEEEccceEeEEEEcCCCCeEEEEEEEECCeEE
Q psy1205 482 ----------LNGVSHTGFMIAQTTTRNGSRLSTSKAFLRPIISRNNLHILLNTTVTRVIVDPLTKAAIGVEFLTNGRLE 551 (868)
Q Consensus 482 ----------~n~~~~~G~~~~~~~~~~g~R~s~~~~~L~~~~~~~nl~I~~~~~V~rIl~d~~~~~a~GV~~~~~g~~~ 551 (868)
++.+...+......++-+... ...+++..+. ..|++|..+++|++|..+.++ ++ +....+|++.
T Consensus 124 ~~~i~~~eP~l~~~~~aal~~p~~giV~~~~--~t~~l~e~a~-~~g~~i~ln~eV~~i~~~~dg--~~-~~~~~~g~~~ 197 (429)
T COG0579 124 KEEIKELEPLLNEGAVAALLVPSGGIVDPGE--LTRALAEEAQ-ANGVELRLNTEVTGIEKQSDG--VF-VLNTSNGEET 197 (429)
T ss_pred HHHHHhhCccccccceeeEEcCCCceEcHHH--HHHHHHHHHH-HcCCEEEecCeeeEEEEeCCc--eE-EEEecCCcEE
Confidence 111111122222233333222 2334444443 459999999999999987432 22 1123366555
Q ss_pred EEEeccEEEEccCCcCchHHHHhcCCCC
Q psy1205 552 RLQAKNEVIVCAGAVDSPRILLLSGIGP 579 (868)
Q Consensus 552 ~v~A~k~VILAAGai~SP~LLl~SGIGp 579 (868)
++|+ -||.||| ..+-+|+.++|+.+
T Consensus 198 -~~ak-~Vin~AG-l~Ad~la~~~g~~~ 222 (429)
T COG0579 198 -LEAK-FVINAAG-LYADPLAQMAGIPE 222 (429)
T ss_pred -EEee-EEEECCc-hhHHHHHHHhCCCc
Confidence 8895 7888888 57888999998765
No 81
>PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases.; PDB: 2I0Z_A 3V76_A 2GQF_A.
Probab=96.81 E-value=0.00055 Score=77.54 Aligned_cols=52 Identities=27% Similarity=0.434 Sum_probs=32.8
Q ss_pred ccCCCCeEEEccceEeEEEEcCCCCeEEEEEEEECCeEEEEEeccEEEEccCCcCchH
Q psy1205 513 IISRNNLHILLNTTVTRVIVDPLTKAAIGVEFLTNGRLERLQAKNEVIVCAGAVDSPR 570 (868)
Q Consensus 513 ~~~~~nl~I~~~~~V~rIl~d~~~~~a~GV~~~~~g~~~~v~A~k~VILAAGai~SP~ 570 (868)
..++.+++|+++++|+.|..+ ++.+..|+. .++ ..+.|+ .||||+|+..-|+
T Consensus 118 ~l~~~gv~i~~~~~V~~i~~~--~~~~f~v~~-~~~--~~~~a~-~vILAtGG~S~p~ 169 (409)
T PF03486_consen 118 ELKRLGVEIHFNTRVKSIEKK--EDGVFGVKT-KNG--GEYEAD-AVILATGGKSYPK 169 (409)
T ss_dssp HHHHHT-EEE-S--EEEEEEE--TTEEEEEEE-TTT--EEEEES-EEEE----SSSGG
T ss_pred HHHHcCCEEEeCCEeeeeeec--CCceeEeec-cCc--ccccCC-EEEEecCCCCccc
Confidence 335578999999999999987 566777765 233 367785 7999999998887
No 82
>COG2081 Predicted flavoproteins [General function prediction only]
Probab=96.78 E-value=0.00097 Score=72.89 Aligned_cols=38 Identities=29% Similarity=0.565 Sum_probs=35.1
Q ss_pred CcceEEEECCCchhhhHHhhhhccCcccccccCCCCCcc
Q psy1205 60 RDYDFIVIGGGSSGAVVANRLSEMNTCNCPVTQPGPTLA 98 (868)
Q Consensus 60 ~~~d~~~~g~~~~~~~~a~~~~~~~~~~~LvlE~G~~LG 98 (868)
..+|+||||||+||.+.|..+++. +.+|+|||+++.+|
T Consensus 2 ~~~dviIIGgGpAGlMaA~~aa~~-G~~V~lid~~~k~G 39 (408)
T COG2081 2 ERFDVIIIGGGPAGLMAAISAAKA-GRRVLLIDKGPKLG 39 (408)
T ss_pred CcceEEEECCCHHHHHHHHHHhhc-CCEEEEEecCcccc
Confidence 368999999999999999999985 88999999999977
No 83
>TIGR00292 thiazole biosynthesis enzyme. This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.
Probab=96.78 E-value=0.00072 Score=71.67 Aligned_cols=38 Identities=24% Similarity=0.348 Sum_probs=34.3
Q ss_pred CcceEEEECCCchhhhHHhhhhccCcccccccCCCCCcc
Q psy1205 60 RDYDFIVIGGGSSGAVVANRLSEMNTCNCPVTQPGPTLA 98 (868)
Q Consensus 60 ~~~d~~~~g~~~~~~~~a~~~~~~~~~~~LvlE~G~~LG 98 (868)
.+||++|||||++|+.+|..|++. +.+|+||||+..+|
T Consensus 20 ~~~DVvIVGgGpAGL~aA~~la~~-G~~V~vlEk~~~~G 57 (254)
T TIGR00292 20 AESDVIIVGAGPSGLTAAYYLAKN-GLKVCVLERSLAFG 57 (254)
T ss_pred cCCCEEEECCCHHHHHHHHHHHHC-CCcEEEEecCCCCC
Confidence 479999999999999999999986 68999999998754
No 84
>PLN00093 geranylgeranyl diphosphate reductase; Provisional
Probab=96.74 E-value=0.00087 Score=77.32 Aligned_cols=38 Identities=26% Similarity=0.382 Sum_probs=33.8
Q ss_pred CCCCcceEEEECCCchhhhHHhhhhccCcccccccCCCC
Q psy1205 57 FPDRDYDFIVIGGGSSGAVVANRLSEMNTCNCPVTQPGP 95 (868)
Q Consensus 57 ~~~~~~d~~~~g~~~~~~~~a~~~~~~~~~~~LvlE~G~ 95 (868)
.+...||+||||||+||+++|..|++. +++|+|||+..
T Consensus 35 ~~~~~~DViIVGaGPAG~~aA~~LA~~-G~~VlllEr~~ 72 (450)
T PLN00093 35 LSGRKLRVAVIGGGPAGACAAETLAKG-GIETFLIERKL 72 (450)
T ss_pred cCCCCCeEEEECCCHHHHHHHHHHHhC-CCcEEEEecCC
Confidence 455789999999999999999999976 79999999854
No 85
>PTZ00363 rab-GDP dissociation inhibitor; Provisional
Probab=96.71 E-value=0.00098 Score=76.30 Aligned_cols=38 Identities=24% Similarity=0.300 Sum_probs=35.7
Q ss_pred CcceEEEECCCchhhhHHhhhhccCcccccccCCCCCcc
Q psy1205 60 RDYDFIVIGGGSSGAVVANRLSEMNTCNCPVTQPGPTLA 98 (868)
Q Consensus 60 ~~~d~~~~g~~~~~~~~a~~~~~~~~~~~LvlE~G~~LG 98 (868)
++||+||||+|.+||++|+.||.. +.|||+|||-...|
T Consensus 3 ~~~DViViGtGL~e~ilAa~Ls~~-GkkVLhlD~n~~yG 40 (443)
T PTZ00363 3 ETYDVIVCGTGLKECILSGLLSVN-GKKVLHMDRNPYYG 40 (443)
T ss_pred CcceEEEECCChHHHHHHhhhhhC-CCEEEEecCCCCcC
Confidence 579999999999999999999986 78999999999888
No 86
>TIGR01423 trypano_reduc trypanothione-disulfide reductase. Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.
Probab=96.63 E-value=0.001 Score=77.57 Aligned_cols=46 Identities=20% Similarity=0.336 Sum_probs=38.7
Q ss_pred CcceEEEECCCchhhhHHhhhhccCcccccccCCC--------CCcc-ccchhhH
Q psy1205 60 RDYDFIVIGGGSSGAVVANRLSEMNTCNCPVTQPG--------PTLA-STCGGSA 105 (868)
Q Consensus 60 ~~~d~~~~g~~~~~~~~a~~~~~~~~~~~LvlE~G--------~~LG-s~iN~~~ 105 (868)
.+||+||||+|++|..+|.++++..+.+|+|||++ ..|| +|+|-+.
T Consensus 2 ~~~DviVIG~G~~G~~aA~~aa~~~g~~V~lie~~~~~~~~~~~~~GGtCln~GC 56 (486)
T TIGR01423 2 KAFDLVVIGAGSGGLEAGWNAATLYKKRVAVIDVQTHHGPPHYAALGGTCVNVGC 56 (486)
T ss_pred CccCEEEECCChHHHHHHHHHHHhcCCEEEEEecccCccccccCCccCeecCcCC
Confidence 46999999999999999999998546899999984 3577 8888543
No 87
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=96.60 E-value=0.0011 Score=76.84 Aligned_cols=44 Identities=30% Similarity=0.545 Sum_probs=37.6
Q ss_pred CcceEEEECCCchhhhHHhhhhccCcccccccCCCCCcc-ccchhhH
Q psy1205 60 RDYDFIVIGGGSSGAVVANRLSEMNTCNCPVTQPGPTLA-STCGGSA 105 (868)
Q Consensus 60 ~~~d~~~~g~~~~~~~~a~~~~~~~~~~~LvlE~G~~LG-s~iN~~~ 105 (868)
++||+||||+|++|..+|.++++. +.+|+|+|++. +| +|+|.+.
T Consensus 1 ~~yDvvVIG~GpaG~~aA~~aa~~-G~~V~liE~~~-~GG~c~~~gc 45 (450)
T TIGR01421 1 KHYDYLVIGGGSGGIASARRAAEH-GAKALLVEAKK-LGGTCVNVGC 45 (450)
T ss_pred CCCCEEEECcCHHHHHHHHHHHHC-CCcEEEecccc-cccceeccCc
Confidence 369999999999999999999986 78999999964 66 7777544
No 88
>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]
Probab=96.59 E-value=0.001 Score=75.94 Aligned_cols=45 Identities=27% Similarity=0.516 Sum_probs=39.1
Q ss_pred CcceEEEECCCchhhhHHhhhhccCcccccccCCCCCcc-ccchhhH
Q psy1205 60 RDYDFIVIGGGSSGAVVANRLSEMNTCNCPVTQPGPTLA-STCGGSA 105 (868)
Q Consensus 60 ~~~d~~~~g~~~~~~~~a~~~~~~~~~~~LvlE~G~~LG-s~iN~~~ 105 (868)
.+||+||||+|++|.++|.|+++. +.||+|+|+++.|| +|+|-+.
T Consensus 3 ~~yDvvVIG~GpaG~~aA~raa~~-G~kvalvE~~~~lGGtCln~GC 48 (454)
T COG1249 3 KEYDVVVIGAGPAGYVAAIRAAQL-GLKVALVEKGERLGGTCLNVGC 48 (454)
T ss_pred ccccEEEECCCHHHHHHHHHHHhC-CCCEEEEeecCCcCceEEeeCc
Confidence 479999999999999999999997 44599999998887 8888543
No 89
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=96.58 E-value=0.0011 Score=77.27 Aligned_cols=43 Identities=26% Similarity=0.437 Sum_probs=37.4
Q ss_pred cceEEEECCCchhhhHHhhhhccCcccccccCCCCCcc-ccchhh
Q psy1205 61 DYDFIVIGGGSSGAVVANRLSEMNTCNCPVTQPGPTLA-STCGGS 104 (868)
Q Consensus 61 ~~d~~~~g~~~~~~~~a~~~~~~~~~~~LvlE~G~~LG-s~iN~~ 104 (868)
+||+||||+|+||..+|.++++. +.+|+|||+.+.+| .|+|.+
T Consensus 3 ~~DvvVIG~GpaG~~AA~~aa~~-G~~V~liE~~~~~GG~c~~~g 46 (466)
T PRK06115 3 SYDVVIIGGGPGGYNAAIRAGQL-GLKVACVEGRSTLGGTCLNVG 46 (466)
T ss_pred cccEEEECCCHHHHHHHHHHHhC-CCeEEEEecCCceeeeeccCc
Confidence 59999999999999999999986 78999999866677 676654
No 90
>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G ....
Probab=96.57 E-value=0.001 Score=55.05 Aligned_cols=32 Identities=28% Similarity=0.384 Sum_probs=29.2
Q ss_pred EECCCchhhhHHhhhhccCcccccccCCCCCcc
Q psy1205 66 VIGGGSSGAVVANRLSEMNTCNCPVTQPGPTLA 98 (868)
Q Consensus 66 ~~g~~~~~~~~a~~~~~~~~~~~LvlE~G~~LG 98 (868)
|||+|.+|+.+|.+|++. +++|+|+|+...+|
T Consensus 1 IiGaG~sGl~aA~~L~~~-g~~v~v~E~~~~~G 32 (68)
T PF13450_consen 1 IIGAGISGLAAAYYLAKA-GYRVTVFEKNDRLG 32 (68)
T ss_dssp EES-SHHHHHHHHHHHHT-TSEEEEEESSSSSS
T ss_pred CEeeCHHHHHHHHHHHHC-CCcEEEEecCcccC
Confidence 799999999999999987 78999999999977
No 91
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=96.56 E-value=0.0012 Score=76.27 Aligned_cols=43 Identities=16% Similarity=0.295 Sum_probs=37.1
Q ss_pred cceEEEECCCchhhhHHhhhhccCcccccccCCCCC-cc-ccchhh
Q psy1205 61 DYDFIVIGGGSSGAVVANRLSEMNTCNCPVTQPGPT-LA-STCGGS 104 (868)
Q Consensus 61 ~~d~~~~g~~~~~~~~a~~~~~~~~~~~LvlE~G~~-LG-s~iN~~ 104 (868)
.||+||||||+||+.+|.+|++. +.+|+|||+++. +| +|.|.+
T Consensus 3 ~yDvvVIGgGpaGl~aA~~la~~-g~~V~lie~~~~~~GG~~~~~g 47 (441)
T PRK08010 3 KYQAVIIGFGKAGKTLAVTLAKA-GWRVALIEQSNAMYGGTCINIG 47 (441)
T ss_pred cCCEEEECCCHhHHHHHHHHHHC-CCeEEEEcCCCCccceeEeecc
Confidence 59999999999999999999985 689999999864 66 666644
No 92
>PRK11728 hydroxyglutarate oxidase; Provisional
Probab=96.51 E-value=0.0013 Score=74.69 Aligned_cols=38 Identities=34% Similarity=0.490 Sum_probs=33.8
Q ss_pred cceEEEECCCchhhhHHhhhhcc-CcccccccCCCCCcc
Q psy1205 61 DYDFIVIGGGSSGAVVANRLSEM-NTCNCPVTQPGPTLA 98 (868)
Q Consensus 61 ~~d~~~~g~~~~~~~~a~~~~~~-~~~~~LvlE~G~~LG 98 (868)
.||+||||||.+|+.+|..|++. ++++|+||||+..+|
T Consensus 2 ~~dVvIIGgGi~G~s~A~~La~~~~g~~V~llE~~~~~~ 40 (393)
T PRK11728 2 MYDFVIIGGGIVGLSTAMQLQERYPGARIAVLEKESGPA 40 (393)
T ss_pred CccEEEECCcHHHHHHHHHHHHhCCCCeEEEEeCCCccc
Confidence 48999999999999999999984 578999999997654
No 93
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=96.49 E-value=0.0015 Score=76.13 Aligned_cols=45 Identities=18% Similarity=0.235 Sum_probs=39.5
Q ss_pred cceEEEECCCchhhhHHhhhhccCcccccccCCCCCcc-ccchhhHH
Q psy1205 61 DYDFIVIGGGSSGAVVANRLSEMNTCNCPVTQPGPTLA-STCGGSAY 106 (868)
Q Consensus 61 ~~d~~~~g~~~~~~~~a~~~~~~~~~~~LvlE~G~~LG-s~iN~~~y 106 (868)
.||+||||||++|..+|.++++. +.+|+|||+.+.+| +|.|.+.+
T Consensus 4 ~~DvvVIG~GpaG~~aA~~aa~~-G~~V~lie~~~~~GG~c~n~gci 49 (471)
T PRK06467 4 KTQVVVLGAGPAGYSAAFRAADL-GLETVCVERYSTLGGVCLNVGCI 49 (471)
T ss_pred cceEEEECCCHHHHHHHHHHHHC-CCcEEEEecCCcccccccCCCcc
Confidence 59999999999999999999986 78999999987777 78886543
No 94
>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional
Probab=96.47 E-value=0.0015 Score=69.38 Aligned_cols=37 Identities=22% Similarity=0.333 Sum_probs=33.0
Q ss_pred CcceEEEECCCchhhhHHhhhhccCcccccccCCCCCc
Q psy1205 60 RDYDFIVIGGGSSGAVVANRLSEMNTCNCPVTQPGPTL 97 (868)
Q Consensus 60 ~~~d~~~~g~~~~~~~~a~~~~~~~~~~~LvlE~G~~L 97 (868)
.+||+||||||+||+.+|..|++. +++|+|||+...+
T Consensus 24 ~~~DVvIVGgGpAGl~AA~~la~~-G~~V~liEk~~~~ 60 (257)
T PRK04176 24 LEVDVAIVGAGPSGLTAAYYLAKA-GLKVAVFERKLSF 60 (257)
T ss_pred ccCCEEEECccHHHHHHHHHHHhC-CCeEEEEecCCCC
Confidence 469999999999999999999874 8999999998753
No 95
>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.
Probab=96.46 E-value=0.0014 Score=75.81 Aligned_cols=43 Identities=23% Similarity=0.397 Sum_probs=37.1
Q ss_pred cceEEEECCCchhhhHHhhhhccCcccccccCCCCCcc-ccchhhH
Q psy1205 61 DYDFIVIGGGSSGAVVANRLSEMNTCNCPVTQPGPTLA-STCGGSA 105 (868)
Q Consensus 61 ~~d~~~~g~~~~~~~~a~~~~~~~~~~~LvlE~G~~LG-s~iN~~~ 105 (868)
+||+||||||+||..+|.++++. +.+|+|+|++ .|| +|+|.+.
T Consensus 2 ~yDvvVIG~GpaG~~aA~~aa~~-G~~V~lie~~-~~GG~c~~~gc 45 (446)
T TIGR01424 2 DYDLFVIGAGSGGVRAARLAANH-GAKVAIAEEP-RVGGTCVIRGC 45 (446)
T ss_pred cccEEEECCCHHHHHHHHHHHhC-CCcEEEEecC-ccCceeecCCc
Confidence 59999999999999999999986 7899999995 577 7777543
No 96
>COG0562 Glf UDP-galactopyranose mutase [Cell envelope biogenesis, outer membrane]
Probab=96.43 E-value=0.0017 Score=68.57 Aligned_cols=36 Identities=22% Similarity=0.541 Sum_probs=32.6
Q ss_pred ceEEEECCCchhhhHHhhhhccCcccccccCCCCCcc
Q psy1205 62 YDFIVIGGGSSGAVVANRLSEMNTCNCPVTQPGPTLA 98 (868)
Q Consensus 62 ~d~~~~g~~~~~~~~a~~~~~~~~~~~LvlE~G~~LG 98 (868)
|||||||+|.+|+|+|+.+++. +.+||+||+-..+|
T Consensus 2 fd~lIVGaGlsG~V~A~~a~~~-gk~VLIvekR~HIG 37 (374)
T COG0562 2 FDYLIVGAGLSGAVIAEVAAQL-GKRVLIVEKRNHIG 37 (374)
T ss_pred CcEEEECCchhHHHHHHHHHHc-CCEEEEEeccccCC
Confidence 8999999999999999977765 78999999998876
No 97
>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional
Probab=96.41 E-value=0.0057 Score=65.08 Aligned_cols=52 Identities=21% Similarity=0.205 Sum_probs=39.2
Q ss_pred cCCCCeEEEccceEeEEEEcCCCCeEEEEEEEE-----CC---eEEEEEeccEEEEccCCcC
Q psy1205 514 ISRNNLHILLNTTVTRVIVDPLTKAAIGVEFLT-----NG---RLERLQAKNEVIVCAGAVD 567 (868)
Q Consensus 514 ~~~~nl~I~~~~~V~rIl~d~~~~~a~GV~~~~-----~g---~~~~v~A~k~VILAAGai~ 567 (868)
....|++|+.++.|++|..++ ++++.||.+.. .+ ...+++|+ .||+|+|.-.
T Consensus 114 A~~~Gv~I~~~t~V~dl~~~~-~g~V~Gvv~~~~~v~~~g~~~~~~~i~Ak-~VI~ATG~~a 173 (257)
T PRK04176 114 AIDAGAKIFNGVSVEDVILRE-DPRVAGVVINWTPVEMAGLHVDPLTIEAK-AVVDATGHDA 173 (257)
T ss_pred HHHcCCEEEcCceeceeeEeC-CCcEEEEEEccccccccCCCCCcEEEEcC-EEEEEeCCCc
Confidence 345689999999999998863 34899987642 11 34689995 8999999644
No 98
>PLN02661 Putative thiazole synthesis
Probab=96.41 E-value=0.0016 Score=71.29 Aligned_cols=38 Identities=24% Similarity=0.412 Sum_probs=34.4
Q ss_pred CcceEEEECCCchhhhHHhhhhccCcccccccCCCCCc
Q psy1205 60 RDYDFIVIGGGSSGAVVANRLSEMNTCNCPVTQPGPTL 97 (868)
Q Consensus 60 ~~~d~~~~g~~~~~~~~a~~~~~~~~~~~LvlE~G~~L 97 (868)
.++|+||||+|++|+++|..|++.++++|+|||++..+
T Consensus 91 ~~~DVlIVGaG~AGl~AA~~La~~~g~kV~viEk~~~~ 128 (357)
T PLN02661 91 ADTDVVIVGAGSAGLSCAYELSKNPNVKVAIIEQSVSP 128 (357)
T ss_pred ccCCEEEECCHHHHHHHHHHHHHcCCCeEEEEecCccc
Confidence 47999999999999999999998778999999998753
No 99
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=96.41 E-value=0.0017 Score=75.55 Aligned_cols=43 Identities=28% Similarity=0.464 Sum_probs=37.7
Q ss_pred CcceEEEECCCchhhhHHhhhhccCcccccccCCCCCcc-ccchhh
Q psy1205 60 RDYDFIVIGGGSSGAVVANRLSEMNTCNCPVTQPGPTLA-STCGGS 104 (868)
Q Consensus 60 ~~~d~~~~g~~~~~~~~a~~~~~~~~~~~LvlE~G~~LG-s~iN~~ 104 (868)
..||+||||||+||..+|.++++. +.+|+|+|++. || +|+|.+
T Consensus 3 ~~yDvvVIGaGpaG~~aA~~aa~~-G~~V~liE~~~-~GG~c~~~g 46 (462)
T PRK06416 3 FEYDVIVIGAGPGGYVAAIRAAQL-GLKVAIVEKEK-LGGTCLNRG 46 (462)
T ss_pred ccccEEEECCCHHHHHHHHHHHHC-CCcEEEEeccc-cccceeecc
Confidence 469999999999999999999986 78999999987 77 676644
No 100
>PRK05257 malate:quinone oxidoreductase; Validated
Probab=96.40 E-value=0.0016 Score=75.90 Aligned_cols=39 Identities=23% Similarity=0.332 Sum_probs=34.9
Q ss_pred CcceEEEECCCchhhhHHhhhhcc-CcccccccCCCCCcc
Q psy1205 60 RDYDFIVIGGGSSGAVVANRLSEM-NTCNCPVTQPGPTLA 98 (868)
Q Consensus 60 ~~~d~~~~g~~~~~~~~a~~~~~~-~~~~~LvlE~G~~LG 98 (868)
..||+||||||..||++|..|++. ++++|+||||...+|
T Consensus 4 ~~~DVvIIGgGIiG~slA~~L~~~~~g~~V~VlEk~~~~a 43 (494)
T PRK05257 4 SKTDVVLIGGGIMSATLGTLLKELEPEWSITMFERLDGVA 43 (494)
T ss_pred ccceEEEECcHHHHHHHHHHHHHhCCCCeEEEEEcCCchh
Confidence 468999999999999999999984 689999999997654
No 101
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=96.40 E-value=0.0017 Score=75.61 Aligned_cols=44 Identities=23% Similarity=0.361 Sum_probs=38.1
Q ss_pred CcceEEEECCCchhhhHHhhhhccCcccccccCCCCCcc-ccchhh
Q psy1205 60 RDYDFIVIGGGSSGAVVANRLSEMNTCNCPVTQPGPTLA-STCGGS 104 (868)
Q Consensus 60 ~~~d~~~~g~~~~~~~~a~~~~~~~~~~~LvlE~G~~LG-s~iN~~ 104 (868)
..||+||||||++|+.+|.+|++. +.+|+|+|++..+| +|.|.+
T Consensus 4 ~~yDvvVIGaGpaG~~aA~~la~~-G~~v~liE~~~~~GG~~~~~g 48 (461)
T PRK05249 4 YDYDLVVIGSGPAGEGAAMQAAKL-GKRVAVIERYRNVGGGCTHTG 48 (461)
T ss_pred ccccEEEECCCHHHHHHHHHHHhC-CCEEEEEeccccccccccccC
Confidence 469999999999999999999986 78999999988887 665543
No 102
>PLN02661 Putative thiazole synthesis
Probab=96.38 E-value=0.0067 Score=66.57 Aligned_cols=56 Identities=20% Similarity=0.268 Sum_probs=42.3
Q ss_pred hhhhccCCCCeEEEccceEeEEEEcCCCCeEEEEEEE-----EC--C----eEEEEEeccEEEEccCCcC
Q psy1205 509 FLRPIISRNNLHILLNTTVTRVIVDPLTKAAIGVEFL-----TN--G----RLERLQAKNEVIVCAGAVD 567 (868)
Q Consensus 509 ~L~~~~~~~nl~I~~~~~V~rIl~d~~~~~a~GV~~~-----~~--g----~~~~v~A~k~VILAAGai~ 567 (868)
.+..+.+++|++|+.++.|++|+.+ ++++.||.+. .+ + ....++|+ .||||+|.-+
T Consensus 178 Li~ka~~~~gVkI~~~t~V~DLI~~--~grVaGVVvnw~~v~~~~~~~s~~dp~~I~Ak-aVVlATGh~g 244 (357)
T PLN02661 178 IMSKLLARPNVKLFNAVAAEDLIVK--GDRVGGVVTNWALVAQNHDTQSCMDPNVMEAK-VVVSSCGHDG 244 (357)
T ss_pred HHHHHHhcCCCEEEeCeEeeeEEec--CCEEEEEEeecchhhhccCCCCccceeEEECC-EEEEcCCCCC
Confidence 4444556789999999999999997 6799999862 12 1 23578885 8999999544
No 103
>TIGR02032 GG-red-SF geranylgeranyl reductase family. This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.
Probab=96.35 E-value=0.0018 Score=70.10 Aligned_cols=34 Identities=29% Similarity=0.508 Sum_probs=31.6
Q ss_pred ceEEEECCCchhhhHHhhhhccCcccccccCCCCC
Q psy1205 62 YDFIVIGGGSSGAVVANRLSEMNTCNCPVTQPGPT 96 (868)
Q Consensus 62 ~d~~~~g~~~~~~~~a~~~~~~~~~~~LvlE~G~~ 96 (868)
||+||||||.+|+++|..|++. +.+|+|||++..
T Consensus 1 ~dv~IiGaG~aGl~~A~~l~~~-g~~v~vie~~~~ 34 (295)
T TIGR02032 1 YDVVVVGAGPAGASAAYRLADK-GLRVLLLEKKSF 34 (295)
T ss_pred CCEEEECCCHHHHHHHHHHHHC-CCeEEEEeccCC
Confidence 7999999999999999999976 789999999875
No 104
>TIGR02023 BchP-ChlP geranylgeranyl reductase. This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ).
Probab=96.34 E-value=0.0017 Score=73.81 Aligned_cols=32 Identities=38% Similarity=0.584 Sum_probs=30.1
Q ss_pred ceEEEECCCchhhhHHhhhhccCcccccccCCC
Q psy1205 62 YDFIVIGGGSSGAVVANRLSEMNTCNCPVTQPG 94 (868)
Q Consensus 62 ~d~~~~g~~~~~~~~a~~~~~~~~~~~LvlE~G 94 (868)
||+||||||+||+++|..|++. +++|+|||+.
T Consensus 1 yDVvIVGaGpAG~~aA~~La~~-G~~V~l~E~~ 32 (388)
T TIGR02023 1 YDVAVIGGGPSGATAAETLARA-GIETILLERA 32 (388)
T ss_pred CeEEEECCCHHHHHHHHHHHhC-CCcEEEEECC
Confidence 8999999999999999999976 7999999986
No 105
>TIGR01320 mal_quin_oxido malate:quinone-oxidoreductase. This membrane-associated enzyme is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in E. coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase.
Probab=96.34 E-value=0.0017 Score=75.47 Aligned_cols=37 Identities=22% Similarity=0.302 Sum_probs=33.9
Q ss_pred ceEEEECCCchhhhHHhhhhcc-CcccccccCCCCCcc
Q psy1205 62 YDFIVIGGGSSGAVVANRLSEM-NTCNCPVTQPGPTLA 98 (868)
Q Consensus 62 ~d~~~~g~~~~~~~~a~~~~~~-~~~~~LvlE~G~~LG 98 (868)
||++|||||.+||.+|..|++. |+++|+||||+..+|
T Consensus 1 ~DVvIIGgGI~G~a~A~~L~~~~~g~~V~VlEk~~~~a 38 (483)
T TIGR01320 1 TDVVLIGAGIMSATLGVLLRELEPNWSITLIERLDAVA 38 (483)
T ss_pred CcEEEECchHHHHHHHHHHHHhCCCCeEEEEEcCCcch
Confidence 6999999999999999999985 789999999987755
No 106
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=96.33 E-value=0.0019 Score=75.39 Aligned_cols=43 Identities=28% Similarity=0.590 Sum_probs=37.4
Q ss_pred CcceEEEECCCchhhhHHhhhhccCcccccccCCCCCcc-ccchhh
Q psy1205 60 RDYDFIVIGGGSSGAVVANRLSEMNTCNCPVTQPGPTLA-STCGGS 104 (868)
Q Consensus 60 ~~~d~~~~g~~~~~~~~a~~~~~~~~~~~LvlE~G~~LG-s~iN~~ 104 (868)
..||+||||||+||..+|.+|++. +.+|+|||++ .+| +|+|.+
T Consensus 3 ~~ydvvVIG~GpaG~~aA~~aa~~-G~~v~lie~~-~~GG~c~~~g 46 (472)
T PRK05976 3 KEYDLVIIGGGPGGYVAAIRAGQL-GLKTALVEKG-KLGGTCLHKG 46 (472)
T ss_pred ccccEEEECCCHHHHHHHHHHHhC-CCeEEEEEcc-CCCcceEcCC
Confidence 369999999999999999999985 7899999997 566 777754
No 107
>PRK13339 malate:quinone oxidoreductase; Reviewed
Probab=96.33 E-value=0.0019 Score=74.92 Aligned_cols=40 Identities=20% Similarity=0.208 Sum_probs=34.8
Q ss_pred CCcceEEEECCCchhhhHHhhhhc-cCcccccccCCCCCcc
Q psy1205 59 DRDYDFIVIGGGSSGAVVANRLSE-MNTCNCPVTQPGPTLA 98 (868)
Q Consensus 59 ~~~~d~~~~g~~~~~~~~a~~~~~-~~~~~~LvlE~G~~LG 98 (868)
+..||+||||||.+|+++|..|++ .|+++|+||||-..+|
T Consensus 4 ~~~~DvvIIGgGI~G~sla~~L~~~~~~~~V~vlEr~~~~a 44 (497)
T PRK13339 4 SESKDVVLVGAGILSTTFGVLLKELDPDWNIEVVERLDSPA 44 (497)
T ss_pred CccCCEEEECchHHHHHHHHHHHhCCCCCeEEEEEcCCCcc
Confidence 457899999999999999999998 4679999999944655
No 108
>PF12831 FAD_oxidored: FAD dependent oxidoreductase; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A.
Probab=96.32 E-value=0.0019 Score=74.16 Aligned_cols=59 Identities=27% Similarity=0.371 Sum_probs=0.0
Q ss_pred ccCCCCeEEEccceEeEEEEcCCCCeEEEEEEEECCeEEEEEeccEEEEccCCcCchHHHHhcCC
Q psy1205 513 IISRNNLHILLNTTVTRVIVDPLTKAAIGVEFLTNGRLERLQAKNEVIVCAGAVDSPRILLLSGI 577 (868)
Q Consensus 513 ~~~~~nl~I~~~~~V~rIl~d~~~~~a~GV~~~~~g~~~~v~A~k~VILAAGai~SP~LLl~SGI 577 (868)
..+..|++|++++.|+.++.+ +++++||.+...+...+|+|+ .||-|+| .-.|+-++|+
T Consensus 99 ~l~e~gv~v~~~t~v~~v~~~--~~~i~~V~~~~~~g~~~i~A~-~~IDaTG---~g~l~~~aG~ 157 (428)
T PF12831_consen 99 MLAEAGVEVLLGTRVVDVIRD--GGRITGVIVETKSGRKEIRAK-VFIDATG---DGDLAALAGA 157 (428)
T ss_dssp -----------------------------------------------------------------
T ss_pred ccccccccccccccccccccc--ccccccccccccccccccccc-ccccccc---cccccccccc
Confidence 335578999999999999887 678999988764458888885 7888888 3577777765
No 109
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=96.32 E-value=0.0017 Score=75.43 Aligned_cols=42 Identities=29% Similarity=0.481 Sum_probs=36.8
Q ss_pred cceEEEECCCchhhhHHhhhhccCcccccccCCCCCcc-ccchhh
Q psy1205 61 DYDFIVIGGGSSGAVVANRLSEMNTCNCPVTQPGPTLA-STCGGS 104 (868)
Q Consensus 61 ~~d~~~~g~~~~~~~~a~~~~~~~~~~~LvlE~G~~LG-s~iN~~ 104 (868)
+||+||||||+||+.+|.+|++. +.+|+|||+ +.+| +|.|.+
T Consensus 1 ~yDvvVIG~G~aGl~aA~~la~~-G~~v~lie~-~~~GG~~~~~g 43 (461)
T TIGR01350 1 AYDVVVIGGGPGGYVAAIRAAQL-GLKVALVEK-EYLGGTCLNVG 43 (461)
T ss_pred CccEEEECCCHHHHHHHHHHHhC-CCeEEEEec-CCCCCceeecC
Confidence 49999999999999999999985 789999999 6677 776654
No 110
>PRK00711 D-amino acid dehydrogenase small subunit; Validated
Probab=96.31 E-value=0.018 Score=66.02 Aligned_cols=54 Identities=22% Similarity=0.350 Sum_probs=37.8
Q ss_pred hccCCCCeEEEccceEeEEEEcCCCCeEEEEEEEECCeEEEEEeccEEEEccCCcCchHHHH
Q psy1205 512 PIISRNNLHILLNTTVTRVIVDPLTKAAIGVEFLTNGRLERLQAKNEVIVCAGAVDSPRILL 573 (868)
Q Consensus 512 ~~~~~~nl~I~~~~~V~rIl~d~~~~~a~GV~~~~~g~~~~v~A~k~VILAAGai~SP~LLl 573 (868)
...++.+++|++++.|++|..+ ++++.+|+. ++. +++|+ .||+|+|+. +.+|+.
T Consensus 209 ~~~~~~G~~i~~~~~V~~i~~~--~~~~~~v~t--~~~--~~~a~-~VV~a~G~~-~~~l~~ 262 (416)
T PRK00711 209 AMAEQLGVKFRFNTPVDGLLVE--GGRITGVQT--GGG--VITAD-AYVVALGSY-STALLK 262 (416)
T ss_pred HHHHHCCCEEEcCCEEEEEEec--CCEEEEEEe--CCc--EEeCC-EEEECCCcc-hHHHHH
Confidence 3445678999999999999876 456666542 222 57785 799999985 445443
No 111
>PRK06116 glutathione reductase; Validated
Probab=96.31 E-value=0.0019 Score=74.93 Aligned_cols=43 Identities=35% Similarity=0.562 Sum_probs=37.2
Q ss_pred cceEEEECCCchhhhHHhhhhccCcccccccCCCCCcc-ccchhhH
Q psy1205 61 DYDFIVIGGGSSGAVVANRLSEMNTCNCPVTQPGPTLA-STCGGSA 105 (868)
Q Consensus 61 ~~d~~~~g~~~~~~~~a~~~~~~~~~~~LvlE~G~~LG-s~iN~~~ 105 (868)
+||+||||||+||..+|.+|++. +.+|+|+|++ .+| +|+|.+.
T Consensus 4 ~~DvvVIG~GpaG~~aA~~~a~~-G~~V~liE~~-~~GG~c~n~gc 47 (450)
T PRK06116 4 DYDLIVIGGGSGGIASANRAAMY-GAKVALIEAK-RLGGTCVNVGC 47 (450)
T ss_pred CCCEEEECCCHHHHHHHHHHHHC-CCeEEEEecc-chhhhhhccCc
Confidence 59999999999999999999986 7899999997 576 7777443
No 112
>PRK13748 putative mercuric reductase; Provisional
Probab=96.31 E-value=0.002 Score=76.92 Aligned_cols=44 Identities=20% Similarity=0.319 Sum_probs=38.6
Q ss_pred CcceEEEECCCchhhhHHhhhhccCcccccccCCCCCcc-ccchhhH
Q psy1205 60 RDYDFIVIGGGSSGAVVANRLSEMNTCNCPVTQPGPTLA-STCGGSA 105 (868)
Q Consensus 60 ~~~d~~~~g~~~~~~~~a~~~~~~~~~~~LvlE~G~~LG-s~iN~~~ 105 (868)
.+||+||||||++|+.+|.+|++. +.+|+|||++ .+| +|+|-+.
T Consensus 97 ~~~DvvVIG~GpaG~~aA~~~~~~-G~~v~lie~~-~~GG~c~n~gc 141 (561)
T PRK13748 97 RPLHVAVIGSGGAAMAAALKAVEQ-GARVTLIERG-TIGGTCVNVGC 141 (561)
T ss_pred CCCCEEEECcCHHHHHHHHHHHhC-CCeEEEEecC-cceeeccccCc
Confidence 469999999999999999999986 7899999998 677 8887553
No 113
>PLN02464 glycerol-3-phosphate dehydrogenase
Probab=96.31 E-value=0.0081 Score=72.27 Aligned_cols=61 Identities=20% Similarity=0.222 Sum_probs=47.5
Q ss_pred cCCCCeEEEccceEeEEEEcCCCCeEEEEEEEE--CCeEEEEEeccEEEEccCCcCchHHHHhcC
Q psy1205 514 ISRNNLHILLNTTVTRVIVDPLTKAAIGVEFLT--NGRLERLQAKNEVIVCAGAVDSPRILLLSG 576 (868)
Q Consensus 514 ~~~~nl~I~~~~~V~rIl~d~~~~~a~GV~~~~--~g~~~~v~A~k~VILAAGai~SP~LLl~SG 576 (868)
.++.+++|+.++.|++|..++++++++||++.+ +++.++++|+ .||+|||+. +.+|+...|
T Consensus 242 A~~~Ga~i~~~~~V~~l~~~~~~g~v~gV~v~d~~tg~~~~i~a~-~VVnAaGaw-s~~l~~~~g 304 (627)
T PLN02464 242 AALAGAAVLNYAEVVSLIKDESTGRIVGARVRDNLTGKEFDVYAK-VVVNAAGPF-CDEVRKMAD 304 (627)
T ss_pred HHhCCcEEEeccEEEEEEEecCCCcEEEEEEEECCCCcEEEEEeC-EEEECCCHh-HHHHHHhcc
Confidence 355789999999999998763246889998865 5666789995 799999976 667776554
No 114
>PLN02507 glutathione reductase
Probab=96.30 E-value=0.0022 Score=75.15 Aligned_cols=50 Identities=18% Similarity=0.215 Sum_probs=40.7
Q ss_pred CCCCcceEEEECCCchhhhHHhhhhccCcccccccCC---------CCCcc-ccchhhHHH
Q psy1205 57 FPDRDYDFIVIGGGSSGAVVANRLSEMNTCNCPVTQP---------GPTLA-STCGGSAYM 107 (868)
Q Consensus 57 ~~~~~~d~~~~g~~~~~~~~a~~~~~~~~~~~LvlE~---------G~~LG-s~iN~~~y~ 107 (868)
+...+||+||||+|++|..+|.++++. +.+|+|+|+ .+.+| +|+|-+.+-
T Consensus 21 ~~~~~yDvvVIG~GpaG~~aA~~a~~~-G~~V~liE~~~~~~~~~~~~~~GGtc~n~GciP 80 (499)
T PLN02507 21 ATHYDFDLFVIGAGSGGVRAARFSANF-GAKVGICELPFHPISSESIGGVGGTCVIRGCVP 80 (499)
T ss_pred ccccccCEEEECCCHHHHHHHHHHHHC-CCeEEEEeccCcccccccCCCccceeeccCchh
Confidence 345679999999999999999999986 789999996 24477 888855543
No 115
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=96.29 E-value=0.0021 Score=74.21 Aligned_cols=43 Identities=23% Similarity=0.387 Sum_probs=37.2
Q ss_pred cceEEEECCCchhhhHHhhhhccCcccccccCCCCC-cc-ccchhh
Q psy1205 61 DYDFIVIGGGSSGAVVANRLSEMNTCNCPVTQPGPT-LA-STCGGS 104 (868)
Q Consensus 61 ~~d~~~~g~~~~~~~~a~~~~~~~~~~~LvlE~G~~-LG-s~iN~~ 104 (868)
+||+||||||+||..+|.+|++. +.+|+|+|++.. +| +|+|.+
T Consensus 3 ~~dvvVIG~GpaG~~aA~~l~~~-g~~V~liE~~~~~~GG~c~~~g 47 (438)
T PRK07251 3 TYDLIVIGFGKAGKTLAAKLASA-GKKVALVEESKAMYGGTCINIG 47 (438)
T ss_pred ccCEEEECCCHHHHHHHHHHHhC-CCEEEEEecCCcccceeeecCc
Confidence 59999999999999999999985 789999999875 56 676644
No 116
>PTZ00153 lipoamide dehydrogenase; Provisional
Probab=96.29 E-value=0.0021 Score=77.03 Aligned_cols=46 Identities=20% Similarity=0.269 Sum_probs=39.0
Q ss_pred CCcceEEEECCCchhhhHHhhhhccCcccccccCCCC-Ccc-ccchhhH
Q psy1205 59 DRDYDFIVIGGGSSGAVVANRLSEMNTCNCPVTQPGP-TLA-STCGGSA 105 (868)
Q Consensus 59 ~~~~d~~~~g~~~~~~~~a~~~~~~~~~~~LvlE~G~-~LG-s~iN~~~ 105 (868)
+.+||+||||+|++|..+|.++++. +.||+|||++. .|| +|+|-+.
T Consensus 114 ~~~yDviVIG~G~gG~~aA~~aa~~-G~kV~lie~~~~~lGGtCvn~GC 161 (659)
T PTZ00153 114 DEEYDVGIIGCGVGGHAAAINAMER-GLKVIIFTGDDDSIGGTCVNVGC 161 (659)
T ss_pred cccCCEEEECCCHHHHHHHHHHHHC-CCcEEEEeCCCCccccceeEeCC
Confidence 3579999999999999999999986 78999999863 477 8887543
No 117
>PRK14694 putative mercuric reductase; Provisional
Probab=96.23 E-value=0.0026 Score=74.16 Aligned_cols=44 Identities=23% Similarity=0.359 Sum_probs=38.1
Q ss_pred CCcceEEEECCCchhhhHHhhhhccCcccccccCCCCCcc-ccchhh
Q psy1205 59 DRDYDFIVIGGGSSGAVVANRLSEMNTCNCPVTQPGPTLA-STCGGS 104 (868)
Q Consensus 59 ~~~~d~~~~g~~~~~~~~a~~~~~~~~~~~LvlE~G~~LG-s~iN~~ 104 (868)
+..||+||||+|+||..+|.+|++. +.+|+|+|++ .+| +|+|-+
T Consensus 4 ~~~~dviVIGaG~aG~~aA~~l~~~-g~~v~lie~~-~~GGtc~n~G 48 (468)
T PRK14694 4 DNNLHIAVIGSGGSAMAAALKATER-GARVTLIERG-TIGGTCVNIG 48 (468)
T ss_pred CCcCCEEEECCCHHHHHHHHHHHhC-CCcEEEEEcc-ccccceecCC
Confidence 4679999999999999999999986 7799999997 466 777744
No 118
>PRK12409 D-amino acid dehydrogenase small subunit; Provisional
Probab=96.21 E-value=0.0024 Score=73.12 Aligned_cols=36 Identities=25% Similarity=0.271 Sum_probs=32.8
Q ss_pred ceEEEECCCchhhhHHhhhhccCcccccccCCCCCcc
Q psy1205 62 YDFIVIGGGSSGAVVANRLSEMNTCNCPVTQPGPTLA 98 (868)
Q Consensus 62 ~d~~~~g~~~~~~~~a~~~~~~~~~~~LvlE~G~~LG 98 (868)
+|+||||||.+|+.+|.+|++. +.+|+||||+...|
T Consensus 2 ~~vvIIGaG~~G~~~A~~La~~-g~~V~vle~~~~~~ 37 (410)
T PRK12409 2 SHIAVIGAGITGVTTAYALAQR-GYQVTVFDRHRYAA 37 (410)
T ss_pred CEEEEECCCHHHHHHHHHHHHC-CCeEEEEeCCCCCC
Confidence 6999999999999999999986 78999999998644
No 119
>COG1635 THI4 Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism]
Probab=96.19 E-value=0.0026 Score=63.74 Aligned_cols=38 Identities=21% Similarity=0.361 Sum_probs=34.7
Q ss_pred CcceEEEECCCchhhhHHhhhhccCcccccccCCCCCcc
Q psy1205 60 RDYDFIVIGGGSSGAVVANRLSEMNTCNCPVTQPGPTLA 98 (868)
Q Consensus 60 ~~~d~~~~g~~~~~~~~a~~~~~~~~~~~LvlE~G~~LG 98 (868)
.+-|+||||+|++|++.|..|++. +.||+++||--.+|
T Consensus 29 ~esDViIVGaGPsGLtAAyyLAk~-g~kV~i~E~~ls~G 66 (262)
T COG1635 29 LESDVIIVGAGPSGLTAAYYLAKA-GLKVAIFERKLSFG 66 (262)
T ss_pred hhccEEEECcCcchHHHHHHHHhC-CceEEEEEeecccC
Confidence 356999999999999999999997 89999999988766
No 120
>PRK05192 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated
Probab=96.19 E-value=0.0024 Score=74.95 Aligned_cols=38 Identities=29% Similarity=0.495 Sum_probs=34.0
Q ss_pred CcceEEEECCCchhhhHHhhhhccCcccccccCCCC-Ccc
Q psy1205 60 RDYDFIVIGGGSSGAVVANRLSEMNTCNCPVTQPGP-TLA 98 (868)
Q Consensus 60 ~~~d~~~~g~~~~~~~~a~~~~~~~~~~~LvlE~G~-~LG 98 (868)
..||+||||||.|||.+|..++.. +.+|+|||+.+ .+|
T Consensus 3 ~~yDVIVVGGGpAG~eAA~~aAR~-G~kV~LiE~~~d~iG 41 (618)
T PRK05192 3 EEYDVIVVGGGHAGCEAALAAARM-GAKTLLLTHNLDTIG 41 (618)
T ss_pred ccceEEEECchHHHHHHHHHHHHc-CCcEEEEeccccccc
Confidence 469999999999999999999976 89999999996 465
No 121
>TIGR01377 soxA_mon sarcosine oxidase, monomeric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=96.17 E-value=0.028 Score=63.43 Aligned_cols=55 Identities=24% Similarity=0.294 Sum_probs=36.4
Q ss_pred hhhccCCCCeEEEccceEeEEEEcCCCCeEEEEEEEECCeEEEEEeccEEEEccCCcCchHHHH
Q psy1205 510 LRPIISRNNLHILLNTTVTRVIVDPLTKAAIGVEFLTNGRLERLQAKNEVIVCAGAVDSPRILL 573 (868)
Q Consensus 510 L~~~~~~~nl~I~~~~~V~rIl~d~~~~~a~GV~~~~~g~~~~v~A~k~VILAAGai~SP~LLl 573 (868)
|..+.++.+++++.+++|++|..+ ++.+ .|+. .++ ++.++ .||+|+|+.. ++|+.
T Consensus 151 l~~~~~~~g~~~~~~~~V~~i~~~--~~~~-~v~~-~~~---~i~a~-~vV~aaG~~~-~~l~~ 205 (380)
T TIGR01377 151 LQELAEAHGATVRDGTKVVEIEPT--ELLV-TVKT-TKG---SYQAN-KLVVTAGAWT-SKLLS 205 (380)
T ss_pred HHHHHHHcCCEEECCCeEEEEEec--CCeE-EEEe-CCC---EEEeC-EEEEecCcch-HHHhh
Confidence 333445578999999999999775 3333 2432 233 57785 6999999864 45554
No 122
>PRK12845 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=96.15 E-value=0.0047 Score=73.28 Aligned_cols=61 Identities=13% Similarity=0.178 Sum_probs=43.8
Q ss_pred CcccccccccccCCCCCCCccCCCCcEeccCCcEEec---cCCCC-CCCC-ccchHHHHHHHHHHHHHHHH
Q psy1205 792 AENHQAGSCKMGPASDPSAVVSPELKVHGVDRLRVVD---CSIMP-AVTS-GNTNAPAIMIAEKASDLIKQ 857 (868)
Q Consensus 792 t~~H~~GTcrMG~~~dp~~VVD~~lrV~Gv~nL~V~D---aSv~P-~~~~-~NP~~Ti~alAeraAd~I~~ 857 (868)
...|-+|+.+.- .+ .-|+|.++++ ++|||.+. ++++- .-++ ++.....+..+..|++++.+
T Consensus 498 ~~~~T~GGl~id--~~-~qVLd~dg~p--I~GLYAaG~~~gg~~g~~Y~g~G~~lg~a~~fGriAg~~aa~ 563 (564)
T PRK12845 498 SDLGTCGGLRAD--ER-ARVLREDGSV--IDGLYAIGNTAANAFGATYPGAGATIGQGLVYGYIAAQDAAA 563 (564)
T ss_pred ccceecCCeeEC--CC-ceEECCCCCC--CCCeeEeeeeccccccCCCCCcchhhHHHHHHHHHHHHHHhc
Confidence 456667777753 11 2688888885 69999997 45553 3333 78889999999999998764
No 123
>COG0579 Predicted dehydrogenase [General function prediction only]
Probab=96.14 E-value=0.003 Score=71.17 Aligned_cols=39 Identities=36% Similarity=0.537 Sum_probs=35.4
Q ss_pred CcceEEEECCCchhhhHHhhhhc-cCcccccccCCCCCcc
Q psy1205 60 RDYDFIVIGGGSSGAVVANRLSE-MNTCNCPVTQPGPTLA 98 (868)
Q Consensus 60 ~~~d~~~~g~~~~~~~~a~~~~~-~~~~~~LvlE~G~~LG 98 (868)
..||++|||||..||++|..|++ .|.++|+|||+=..+|
T Consensus 2 ~~~DvvIIGgGI~G~a~a~~Ls~~~p~~~V~llEk~~~~a 41 (429)
T COG0579 2 MDYDVVIIGGGIMGAATAYELSEYEPDLSVALLEKEDGVA 41 (429)
T ss_pred CceeEEEECCcHHHHHHHHHHHHhCCCceEEEEEccCccc
Confidence 46999999999999999999999 4569999999998876
No 124
>TIGR00292 thiazole biosynthesis enzyme. This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.
Probab=96.14 E-value=0.01 Score=62.99 Aligned_cols=57 Identities=19% Similarity=0.117 Sum_probs=40.7
Q ss_pred hhhhccCCCCeEEEccceEeEEEEcCCCCeEEEEEEEE-----CC---eEEEEEeccEEEEccCCc
Q psy1205 509 FLRPIISRNNLHILLNTTVTRVIVDPLTKAAIGVEFLT-----NG---RLERLQAKNEVIVCAGAV 566 (868)
Q Consensus 509 ~L~~~~~~~nl~I~~~~~V~rIl~d~~~~~a~GV~~~~-----~g---~~~~v~A~k~VILAAGai 566 (868)
+|.....+.+++|+.++.|++|+.+++..++.||.+.. .+ ...+++| |-||.|+|.-
T Consensus 105 ~L~~~a~e~GV~I~~~t~V~dli~~~~~~~V~GVv~~~~~v~~~g~~~d~~~i~A-k~VVdATG~~ 169 (254)
T TIGR00292 105 TLASKALQAGAKIFNGTSVEDLITRDDTVGVAGVVINWSAIELAGLHVDPLTQRS-RVVVDATGHD 169 (254)
T ss_pred HHHHHHHHcCCEEECCcEEEEEEEeCCCCceEEEEeCCccccccCCCCCCEEEEc-CEEEEeecCC
Confidence 34333344679999999999999874333799998732 12 3578999 5899999943
No 125
>PRK11728 hydroxyglutarate oxidase; Provisional
Probab=96.13 E-value=0.03 Score=63.63 Aligned_cols=57 Identities=28% Similarity=0.394 Sum_probs=39.4
Q ss_pred hccCCCCeEEEccceEeEEEEcCCCCeEEEEEEEECCeEEEEEeccEEEEccCCcCchHHHHhcCC
Q psy1205 512 PIISRNNLHILLNTTVTRVIVDPLTKAAIGVEFLTNGRLERLQAKNEVIVCAGAVDSPRILLLSGI 577 (868)
Q Consensus 512 ~~~~~~nl~I~~~~~V~rIl~d~~~~~a~GV~~~~~g~~~~v~A~k~VILAAGai~SP~LLl~SGI 577 (868)
...++.|++|+.++.|+++..+ ++.+ .|+. .++ ++.++ .||+|+|+ .+++++...|+
T Consensus 157 ~~~~~~Gv~i~~~~~V~~i~~~--~~~~-~V~~-~~g---~i~ad-~vV~A~G~-~s~~l~~~~g~ 213 (393)
T PRK11728 157 ELIQARGGEIRLGAEVTALDEH--ANGV-VVRT-TQG---EYEAR-TLINCAGL-MSDRLAKMAGL 213 (393)
T ss_pred HHHHhCCCEEEcCCEEEEEEec--CCeE-EEEE-CCC---EEEeC-EEEECCCc-chHHHHHHhCC
Confidence 3345578999999999999765 3332 3332 233 57885 79999997 57777776654
No 126
>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways. In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....
Probab=96.10 E-value=0.0025 Score=70.86 Aligned_cols=35 Identities=23% Similarity=0.526 Sum_probs=30.3
Q ss_pred cceEEEECCCchhhhHHhhhhccCcccccccCCCCC
Q psy1205 61 DYDFIVIGGGSSGAVVANRLSEMNTCNCPVTQPGPT 96 (868)
Q Consensus 61 ~~d~~~~g~~~~~~~~a~~~~~~~~~~~LvlE~G~~ 96 (868)
+||+||||||.+|+++|..|+.. +++|+|+||-+.
T Consensus 1 ~~dV~IvGaG~aGl~~A~~L~~~-G~~v~i~E~~~~ 35 (356)
T PF01494_consen 1 EYDVAIVGAGPAGLAAALALARA-GIDVTIIERRPD 35 (356)
T ss_dssp EEEEEEE--SHHHHHHHHHHHHT-TCEEEEEESSSS
T ss_pred CceEEEECCCHHHHHHHHHHHhc-ccccccchhccc
Confidence 58999999999999999999986 689999999775
No 127
>PTZ00383 malate:quinone oxidoreductase; Provisional
Probab=96.10 E-value=0.0036 Score=72.84 Aligned_cols=41 Identities=24% Similarity=0.469 Sum_probs=35.7
Q ss_pred CCCcceEEEECCCchhhhHHhhhhcc-CcccccccCCCCCcc
Q psy1205 58 PDRDYDFIVIGGGSSGAVVANRLSEM-NTCNCPVTQPGPTLA 98 (868)
Q Consensus 58 ~~~~~d~~~~g~~~~~~~~a~~~~~~-~~~~~LvlE~G~~LG 98 (868)
.+..||+||||||..|+.+|..|++. +.++|+||||...++
T Consensus 42 ~~~~~DVvIIGGGI~G~a~A~~La~~~~~~~V~VlEk~~~~a 83 (497)
T PTZ00383 42 GSDVYDVVIVGGGVTGTALFYTLSKFTNLKKIALIERRSDFA 83 (497)
T ss_pred cCCcccEEEECccHHHHHHHHHHHhhCCCCEEEEEecCcchh
Confidence 44679999999999999999999984 668999999987643
No 128
>PRK06370 mercuric reductase; Validated
Probab=96.10 E-value=0.0031 Score=73.39 Aligned_cols=44 Identities=25% Similarity=0.413 Sum_probs=37.2
Q ss_pred CcceEEEECCCchhhhHHhhhhccCcccccccCCCCCccccchhh
Q psy1205 60 RDYDFIVIGGGSSGAVVANRLSEMNTCNCPVTQPGPTLASTCGGS 104 (868)
Q Consensus 60 ~~~d~~~~g~~~~~~~~a~~~~~~~~~~~LvlE~G~~LGs~iN~~ 104 (868)
.+||+||||+|+||..+|.++++. +.+|+|+|++..-|+|.|.+
T Consensus 4 ~~~DvvVIG~GpaG~~aA~~aa~~-G~~v~lie~~~~GG~c~~~g 47 (463)
T PRK06370 4 QRYDAIVIGAGQAGPPLAARAAGL-GMKVALIERGLLGGTCVNTG 47 (463)
T ss_pred ccccEEEECCCHHHHHHHHHHHhC-CCeEEEEecCccCCceeccc
Confidence 469999999999999999999986 78999999975334777754
No 129
>PLN02546 glutathione reductase
Probab=96.08 E-value=0.0031 Score=74.61 Aligned_cols=46 Identities=20% Similarity=0.266 Sum_probs=38.0
Q ss_pred CcceEEEECCCchhhhHHhhhhccCcccccccCC---------CCCcc-ccchhhHH
Q psy1205 60 RDYDFIVIGGGSSGAVVANRLSEMNTCNCPVTQP---------GPTLA-STCGGSAY 106 (868)
Q Consensus 60 ~~~d~~~~g~~~~~~~~a~~~~~~~~~~~LvlE~---------G~~LG-s~iN~~~y 106 (868)
.+||+||||+|++|..+|.++++. +.+|+|+|+ .+.|| +|+|-+.-
T Consensus 78 ~~yDvvVIG~GpaG~~aA~~aa~~-G~~V~liE~~~~~~~~~~~~~~GGtC~n~GCi 133 (558)
T PLN02546 78 YDFDLFTIGAGSGGVRASRFASNF-GASAAVCELPFATISSDTLGGVGGTCVLRGCV 133 (558)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHC-CCeEEEEeccccccccccCCCccCcccCcchH
Confidence 469999999999999999999986 789999996 12366 88885543
No 130
>TIGR01373 soxB sarcosine oxidase, beta subunit family, heterotetrameric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms.
Probab=96.06 E-value=0.011 Score=67.49 Aligned_cols=58 Identities=29% Similarity=0.322 Sum_probs=39.4
Q ss_pred hccCCCCeEEEccceEeEEEEcCCCCeEEEEEEEECCeEEEEEeccEEEEccCCcCchHHHHhcC
Q psy1205 512 PIISRNNLHILLNTTVTRVIVDPLTKAAIGVEFLTNGRLERLQAKNEVIVCAGAVDSPRILLLSG 576 (868)
Q Consensus 512 ~~~~~~nl~I~~~~~V~rIl~d~~~~~a~GV~~~~~g~~~~v~A~k~VILAAGai~SP~LLl~SG 576 (868)
....+.|++++.++.|++|..++ ++++.+|+. .+| +++|+ .||+|||+.. +.++...|
T Consensus 191 ~~a~~~Gv~~~~~~~V~~i~~~~-~~~~~~v~t-~~g---~i~a~-~vVvaagg~~-~~l~~~~g 248 (407)
T TIGR01373 191 RGADRRGVDIIQNCEVTGFIRRD-GGRVIGVET-TRG---FIGAK-KVGVAVAGHS-SVVAAMAG 248 (407)
T ss_pred HHHHHCCCEEEeCCEEEEEEEcC-CCcEEEEEe-CCc---eEECC-EEEECCChhh-HHHHHHcC
Confidence 34456789999999999997642 355666653 234 57885 6999999964 45554433
No 131
>TIGR03329 Phn_aa_oxid putative aminophosphonate oxidoreductase. This clade of sequences are members of the pfam01266 family of FAD-dependent oxidoreductases. Characterized proteins within this family include glycerol-3-phosphate dehydrogenase (1.1.99.5), sarcosine oxidase beta subunit (1.5.3.1) and a number of deaminating amino acid oxidases (1.4.-.-). These genes have been consistently observed in a genomic context including genes for the import and catabolism of 2-aminoethylphosphonate (AEP). If the substrate of this oxidoreductase is AEP itself, then it is probably acting in the manner of a deaminating oxidase, resulting in the same product (phosphonoacetaldehyde) as the transaminase PhnW (TIGR02326), but releasing ammonia instead of coupling to pyruvate:alanine. Alternatively, it is reasonable to suppose that the various ABC cassette transporters which are also associated with these loci allow the import of phosphonates closely related to AEP which may not be substrates for PhnW.
Probab=96.05 E-value=0.0063 Score=70.74 Aligned_cols=47 Identities=19% Similarity=0.183 Sum_probs=32.2
Q ss_pred hccCCCCeEEEccceEeEEEEcCCCCeEEEEEEEECCeEEEEEeccEEEEccCCcC
Q psy1205 512 PIISRNNLHILLNTTVTRVIVDPLTKAAIGVEFLTNGRLERLQAKNEVIVCAGAVD 567 (868)
Q Consensus 512 ~~~~~~nl~I~~~~~V~rIl~d~~~~~a~GV~~~~~g~~~~v~A~k~VILAAGai~ 567 (868)
.+.++.+++|+.++.|++|.. ++ ...|+ ..+| +|+|+ .||+|+|++-
T Consensus 191 ~~a~~~Gv~i~~~t~V~~i~~---~~-~~~v~-t~~g---~v~A~-~VV~Atga~s 237 (460)
T TIGR03329 191 RVALELGVEIHENTPMTGLEE---GQ-PAVVR-TPDG---QVTAD-KVVLALNAWM 237 (460)
T ss_pred HHHHHcCCEEECCCeEEEEee---CC-ceEEE-eCCc---EEECC-EEEEcccccc
Confidence 444567899999999999863 22 22332 2234 47886 7999999864
No 132
>PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed
Probab=96.05 E-value=0.0035 Score=71.16 Aligned_cols=35 Identities=26% Similarity=0.430 Sum_probs=32.0
Q ss_pred CcceEEEECCCchhhhHHhhhhccCcccccccCCCC
Q psy1205 60 RDYDFIVIGGGSSGAVVANRLSEMNTCNCPVTQPGP 95 (868)
Q Consensus 60 ~~~d~~~~g~~~~~~~~a~~~~~~~~~~~LvlE~G~ 95 (868)
..||+||||||.+|+.+|..|++. +++|+|||+.+
T Consensus 4 ~~~dViIvGgG~aGl~~A~~La~~-G~~V~liE~~~ 38 (391)
T PRK08020 4 QPTDIAIVGGGMVGAALALGLAQH-GFSVAVLEHAA 38 (391)
T ss_pred ccccEEEECcCHHHHHHHHHHhcC-CCEEEEEcCCC
Confidence 469999999999999999999876 78999999875
No 133
>TIGR00031 UDP-GALP_mutase UDP-galactopyranose mutase. The gene is known as glf, ceoA, and rfbD. It is known experimentally in E. coli, Mycobacterium tuberculosis, and Klebsiella pneumoniae.
Probab=96.05 E-value=0.0035 Score=70.15 Aligned_cols=36 Identities=31% Similarity=0.599 Sum_probs=32.7
Q ss_pred ceEEEECCCchhhhHHhhhhccCcccccccCCCCCcc
Q psy1205 62 YDFIVIGGGSSGAVVANRLSEMNTCNCPVTQPGPTLA 98 (868)
Q Consensus 62 ~d~~~~g~~~~~~~~a~~~~~~~~~~~LvlE~G~~LG 98 (868)
||++|||||.+|+++|.+|++. +.+|+|||+...+|
T Consensus 2 ~DvvIIGaG~aGlsaA~~La~~-G~~V~viEk~~~iG 37 (377)
T TIGR00031 2 FDYIIVGAGLSGIVLANILAQL-NKRVLVVEKRNHIG 37 (377)
T ss_pred CcEEEECCCHHHHHHHHHHHhC-CCeEEEEecCCCCC
Confidence 7999999999999999999965 78999999987665
No 134
>PRK13369 glycerol-3-phosphate dehydrogenase; Provisional
Probab=96.03 E-value=0.0037 Score=73.43 Aligned_cols=54 Identities=17% Similarity=0.195 Sum_probs=40.6
Q ss_pred CCCCeEEEccceEeEEEEcCCCCeEEEEEEEEC-CeEEEEEeccEEEEccCCcCchHHHH
Q psy1205 515 SRNNLHILLNTTVTRVIVDPLTKAAIGVEFLTN-GRLERLQAKNEVIVCAGAVDSPRILL 573 (868)
Q Consensus 515 ~~~nl~I~~~~~V~rIl~d~~~~~a~GV~~~~~-g~~~~v~A~k~VILAAGai~SP~LLl 573 (868)
.+.+++++.++.|+.|..+ ++ ..+|.+.+. |++++++|+ .||.|||+. +.+|+-
T Consensus 166 ~~~Ga~i~~~~~V~~i~~~--~~-~~~v~~~~~~g~~~~i~a~-~VVnAaG~w-a~~l~~ 220 (502)
T PRK13369 166 AERGATILTRTRCVSARRE--GG-LWRVETRDADGETRTVRAR-ALVNAAGPW-VTDVIH 220 (502)
T ss_pred HHCCCEEecCcEEEEEEEc--CC-EEEEEEEeCCCCEEEEEec-EEEECCCcc-HHHHHh
Confidence 4578999999999999876 33 356666553 667889995 899999975 566654
No 135
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=96.03 E-value=0.0033 Score=73.12 Aligned_cols=41 Identities=22% Similarity=0.469 Sum_probs=35.7
Q ss_pred ceEEEECCCchhhhHHhhhhccCcccccccCCCCCccccchh
Q psy1205 62 YDFIVIGGGSSGAVVANRLSEMNTCNCPVTQPGPTLASTCGG 103 (868)
Q Consensus 62 ~d~~~~g~~~~~~~~a~~~~~~~~~~~LvlE~G~~LGs~iN~ 103 (868)
||+||||+|++|..+|.++++. +.+|+|+|++..-|+|+|-
T Consensus 1 yDvvVIGaGpaG~~aA~~aa~~-g~~v~lie~~~~GG~c~n~ 41 (463)
T TIGR02053 1 YDLVIIGSGAAAFAAAIKAAEL-GASVAMVERGPLGGTCVNV 41 (463)
T ss_pred CCEEEECCCHHHHHHHHHHHHC-CCeEEEEeCCcccCCeeee
Confidence 8999999999999999999985 7899999998733477774
No 136
>TIGR03377 glycerol3P_GlpA glycerol-3-phosphate dehydrogenase, anaerobic, A subunit. Members of this protein family are the A subunit, product of the glpA gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.
Probab=96.03 E-value=0.021 Score=67.48 Aligned_cols=60 Identities=30% Similarity=0.383 Sum_probs=48.6
Q ss_pred cCCCCeEEEccceEeEEEEcCCCCeEEEEEEEE--CCeEEEEEeccEEEEccCCcCchHHHHhcCC
Q psy1205 514 ISRNNLHILLNTTVTRVIVDPLTKAAIGVEFLT--NGRLERLQAKNEVIVCAGAVDSPRILLLSGI 577 (868)
Q Consensus 514 ~~~~nl~I~~~~~V~rIl~d~~~~~a~GV~~~~--~g~~~~v~A~k~VILAAGai~SP~LLl~SGI 577 (868)
+.+.|++|++++.|++|..+ ++++.||++.+ +|+..+|+|+ .||.|||+. +.+|+...|+
T Consensus 138 A~~~Ga~i~~~t~V~~i~~~--~~~v~gv~v~~~~~g~~~~i~a~-~VVnAaG~w-a~~l~~~~g~ 199 (516)
T TIGR03377 138 AQEHGARIFTYTKVTGLIRE--GGRVTGVKVEDHKTGEEERIEAQ-VVINAAGIW-AGRIAEYAGL 199 (516)
T ss_pred HHHcCCEEEcCcEEEEEEEE--CCEEEEEEEEEcCCCcEEEEEcC-EEEECCCcc-hHHHHHhcCC
Confidence 35578999999999999886 67899998865 5667789995 799999965 6788766664
No 137
>PRK11101 glpA sn-glycerol-3-phosphate dehydrogenase subunit A; Provisional
Probab=96.02 E-value=0.0037 Score=74.11 Aligned_cols=35 Identities=29% Similarity=0.515 Sum_probs=32.1
Q ss_pred CcceEEEECCCchhhhHHhhhhccCcccccccCCCC
Q psy1205 60 RDYDFIVIGGGSSGAVVANRLSEMNTCNCPVTQPGP 95 (868)
Q Consensus 60 ~~~d~~~~g~~~~~~~~a~~~~~~~~~~~LvlE~G~ 95 (868)
..||+||||||..|+.+|..|+.. +++|+|||++.
T Consensus 5 ~~~DVvIIGGGi~G~~iA~~La~r-G~~V~LlEk~d 39 (546)
T PRK11101 5 QETDVIIIGGGATGAGIARDCALR-GLRCILVERHD 39 (546)
T ss_pred ccccEEEECcCHHHHHHHHHHHHc-CCeEEEEECCC
Confidence 469999999999999999999986 78999999964
No 138
>TIGR01789 lycopene_cycl lycopene cyclase. This model represents a family of bacterial lycopene cyclases catalyzing the transformation of lycopene to carotene. These enzymes are found in a limited spectrum of alpha and gamma proteobacteria as well as Flavobacterium.
Probab=96.02 E-value=0.0035 Score=70.52 Aligned_cols=34 Identities=35% Similarity=0.613 Sum_probs=31.2
Q ss_pred eEEEECCCchhhhHHhhhhcc-CcccccccCCCCC
Q psy1205 63 DFIVIGGGSSGAVVANRLSEM-NTCNCPVTQPGPT 96 (868)
Q Consensus 63 d~~~~g~~~~~~~~a~~~~~~-~~~~~LvlE~G~~ 96 (868)
|+||||||.||+.+|.+|++. ++.+|+|||+++.
T Consensus 1 DviIvGaG~AGl~lA~~L~~~~~g~~V~lle~~~~ 35 (370)
T TIGR01789 1 DCIIVGGGLAGGLIALRLQRARPDFRIRVIEAGRT 35 (370)
T ss_pred CEEEECccHHHHHHHHHHHhcCCCCeEEEEeCCCC
Confidence 899999999999999999974 6899999999875
No 139
>PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional
Probab=96.01 E-value=0.0036 Score=70.98 Aligned_cols=36 Identities=28% Similarity=0.504 Sum_probs=32.7
Q ss_pred CcceEEEECCCchhhhHHhhhhccCcccccccCCCCC
Q psy1205 60 RDYDFIVIGGGSSGAVVANRLSEMNTCNCPVTQPGPT 96 (868)
Q Consensus 60 ~~~d~~~~g~~~~~~~~a~~~~~~~~~~~LvlE~G~~ 96 (868)
..||+||||||.+|+++|..|++. +++|+|||++..
T Consensus 4 ~~~dv~IvGgG~aGl~~A~~L~~~-G~~v~v~E~~~~ 39 (388)
T PRK07608 4 MKFDVVVVGGGLVGASLALALAQS-GLRVALLAPRAP 39 (388)
T ss_pred ccCCEEEECcCHHHHHHHHHHHhC-CCeEEEEecCCC
Confidence 368999999999999999999975 789999999875
No 140
>PF05834 Lycopene_cycl: Lycopene cyclase protein; InterPro: IPR008671 This family consists of lycopene beta and epsilon cyclase proteins. Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare [].; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0016117 carotenoid biosynthetic process
Probab=95.98 E-value=0.0037 Score=70.52 Aligned_cols=34 Identities=29% Similarity=0.602 Sum_probs=30.1
Q ss_pred eEEEECCCchhhhHHhhhhc-cCcccccccCCCCC
Q psy1205 63 DFIVIGGGSSGAVVANRLSE-MNTCNCPVTQPGPT 96 (868)
Q Consensus 63 d~~~~g~~~~~~~~a~~~~~-~~~~~~LvlE~G~~ 96 (868)
|+||||||.||+.+|.+|.+ .++.+|||||+...
T Consensus 1 DviIvGaGpAGlslA~~l~~~~~g~~Vllid~~~~ 35 (374)
T PF05834_consen 1 DVIIVGAGPAGLSLARRLADARPGLSVLLIDPKPK 35 (374)
T ss_pred CEEEECCcHHHHHHHHHHHhcCCCCEEEEEcCCcc
Confidence 89999999999999999933 35899999999875
No 141
>PF12831 FAD_oxidored: FAD dependent oxidoreductase; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A.
Probab=95.96 E-value=0.0018 Score=74.37 Aligned_cols=30 Identities=23% Similarity=0.355 Sum_probs=23.9
Q ss_pred cccCCCcchhhhhhhhhcccccchhhhhhhhhhc
Q psy1205 332 VTSGSAPLGGIQALRITRQDLVRWDQHLILALSC 365 (868)
Q Consensus 332 ~~~g~~~~g~~~a~~~~~~g~~~~~~~~~~~~~~ 365 (868)
+++|.|.+|+++|..+|+.|+ +|.++|+..
T Consensus 3 VVvGgG~aG~~AAi~AAr~G~----~VlLiE~~~ 32 (428)
T PF12831_consen 3 VVVGGGPAGVAAAIAAARAGA----KVLLIEKGG 32 (428)
T ss_dssp EEE--SHHHHHHHHHHHHTTS-----EEEE-SSS
T ss_pred EEECccHHHHHHHHHHHHCCC----EEEEEECCc
Confidence 678999999999999999998 788888877
No 142
>PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases.; PDB: 2I0Z_A 3V76_A 2GQF_A.
Probab=95.96 E-value=0.0014 Score=74.23 Aligned_cols=36 Identities=17% Similarity=0.245 Sum_probs=25.3
Q ss_pred ccccCCCcchhhhhhhhhcccccchhhhhhhhhhccccCc
Q psy1205 331 AVTSGSAPLGGIQALRITRQDLVRWDQHLILALSCHRNSK 370 (868)
Q Consensus 331 ~~~~g~~~~g~~~a~~~~~~g~~~~~~~~~~~~~~~~~~~ 370 (868)
.+++|.|++|+++|..+|+.|. ++.++|+.+-...+
T Consensus 3 viIIGgGaAGl~aA~~aa~~g~----~V~vlE~~~~~gkK 38 (409)
T PF03486_consen 3 VIIIGGGAAGLMAAITAAEKGA----RVLVLERNKRVGKK 38 (409)
T ss_dssp EEEE--SHHHHHHHHHHHHTT------EEEE-SSSSS-HH
T ss_pred EEEECCCHHHHHHHHHHHhCCC----CEEEEeCCcccccc
Confidence 4679999999999999999998 78888888744443
No 143
>PRK09126 hypothetical protein; Provisional
Probab=95.93 E-value=0.0039 Score=70.76 Aligned_cols=35 Identities=23% Similarity=0.425 Sum_probs=32.5
Q ss_pred cceEEEECCCchhhhHHhhhhccCcccccccCCCCC
Q psy1205 61 DYDFIVIGGGSSGAVVANRLSEMNTCNCPVTQPGPT 96 (868)
Q Consensus 61 ~~d~~~~g~~~~~~~~a~~~~~~~~~~~LvlE~G~~ 96 (868)
.||+||||||++|+.+|..|++. +++|+|+|+...
T Consensus 3 ~~dviIvGgG~aGl~~A~~L~~~-G~~v~v~E~~~~ 37 (392)
T PRK09126 3 HSDIVVVGAGPAGLSFARSLAGS-GLKVTLIERQPL 37 (392)
T ss_pred cccEEEECcCHHHHHHHHHHHhC-CCcEEEEeCCCc
Confidence 58999999999999999999986 799999999875
No 144
>PLN02463 lycopene beta cyclase
Probab=95.92 E-value=0.0046 Score=71.10 Aligned_cols=37 Identities=35% Similarity=0.622 Sum_probs=32.9
Q ss_pred CCcceEEEECCCchhhhHHhhhhccCcccccccCCCCC
Q psy1205 59 DRDYDFIVIGGGSSGAVVANRLSEMNTCNCPVTQPGPT 96 (868)
Q Consensus 59 ~~~~d~~~~g~~~~~~~~a~~~~~~~~~~~LvlE~G~~ 96 (868)
...||+||||||+||+.+|..|++. +++|+|||+.+.
T Consensus 26 ~~~~DVvIVGaGpAGLalA~~La~~-Gl~V~liE~~~~ 62 (447)
T PLN02463 26 SRVVDLVVVGGGPAGLAVAQQVSEA-GLSVCCIDPSPL 62 (447)
T ss_pred ccCceEEEECCCHHHHHHHHHHHHC-CCeEEEeccCcc
Confidence 3579999999999999999999975 899999998653
No 145
>TIGR02028 ChlP geranylgeranyl reductase. This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll.
Probab=95.92 E-value=0.0036 Score=71.23 Aligned_cols=33 Identities=27% Similarity=0.452 Sum_probs=30.2
Q ss_pred ceEEEECCCchhhhHHhhhhccCcccccccCCCC
Q psy1205 62 YDFIVIGGGSSGAVVANRLSEMNTCNCPVTQPGP 95 (868)
Q Consensus 62 ~d~~~~g~~~~~~~~a~~~~~~~~~~~LvlE~G~ 95 (868)
||+||||||+||+++|..|++. +.+|+|||+..
T Consensus 1 ~~VvIVGaGPAG~~aA~~la~~-G~~V~llE~~~ 33 (398)
T TIGR02028 1 LRVAVVGGGPAGASAAETLASA-GIQTFLLERKP 33 (398)
T ss_pred CeEEEECCcHHHHHHHHHHHhC-CCcEEEEecCC
Confidence 6999999999999999999976 79999999854
No 146
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=95.90 E-value=0.0046 Score=72.20 Aligned_cols=45 Identities=24% Similarity=0.454 Sum_probs=37.9
Q ss_pred CcceEEEECCCchhhhHHhhhhccCcccccccCCC------CCcc-ccchhhH
Q psy1205 60 RDYDFIVIGGGSSGAVVANRLSEMNTCNCPVTQPG------PTLA-STCGGSA 105 (868)
Q Consensus 60 ~~~d~~~~g~~~~~~~~a~~~~~~~~~~~LvlE~G------~~LG-s~iN~~~ 105 (868)
.+||+||||||+||+.+|.++++. +.+|+|||++ ..+| +|.|.+.
T Consensus 3 ~~~DviIIG~G~aG~~aA~~~~~~-g~~v~lie~~~~~~g~~~~Gg~c~n~gc 54 (475)
T PRK06327 3 KQFDVVVIGAGPGGYVAAIRAAQL-GLKVACIEAWKNPKGKPALGGTCLNVGC 54 (475)
T ss_pred cceeEEEECCCHHHHHHHHHHHhC-CCeEEEEecccCCCCCCCcCCccccccc
Confidence 369999999999999999999986 7899999992 3466 7877654
No 147
>TIGR03364 HpnW_proposed FAD dependent oxidoreductase TIGR03364. This clade of FAD dependent oxidoreductases (members of the pfam01266 family) is syntenically associated with a family of proposed phosphonatase-like enzymes (TIGR03351) and is also found (less frequently) in association with phosphonate transporter components. A likely role for this enzyme involves the oxidative deamination of an aminophosphonate differring slightly from 2-aminoethylphosphonate, possibly 1-hydroxy-2-aminoethylphosphonate (see the comments for TIGR03351). Many members of the larger FAD dependent oxidoreductase family act as amino acid oxidative deaminases.
Probab=95.89 E-value=0.023 Score=63.87 Aligned_cols=31 Identities=23% Similarity=0.295 Sum_probs=26.3
Q ss_pred ccccCCCcchhhhhhhhhcccccchhhhhhhhhhc
Q psy1205 331 AVTSGSAPLGGIQALRITRQDLVRWDQHLILALSC 365 (868)
Q Consensus 331 ~~~~g~~~~g~~~a~~~~~~g~~~~~~~~~~~~~~ 365 (868)
.+++|.|.+|+.+|+.|++.|. ++.++|+..
T Consensus 3 v~IIG~Gi~G~s~A~~L~~~G~----~V~vle~~~ 33 (365)
T TIGR03364 3 LIIVGAGILGLAHAYAAARRGL----SVTVIERSS 33 (365)
T ss_pred EEEECCCHHHHHHHHHHHHCCC----eEEEEeCCC
Confidence 4679999999999999999996 577777765
No 148
>PRK06481 fumarate reductase flavoprotein subunit; Validated
Probab=95.87 E-value=0.012 Score=69.17 Aligned_cols=38 Identities=21% Similarity=0.416 Sum_probs=34.8
Q ss_pred CcceEEEECCCchhhhHHhhhhccCcccccccCCCCCcc
Q psy1205 60 RDYDFIVIGGGSSGAVVANRLSEMNTCNCPVTQPGPTLA 98 (868)
Q Consensus 60 ~~~d~~~~g~~~~~~~~a~~~~~~~~~~~LvlE~G~~LG 98 (868)
.++|+||||+|.+|+.+|.++++. +.+|+|||+.+.+|
T Consensus 60 ~~~DVvVVG~G~AGl~AAi~Aa~~-Ga~VivlEK~~~~G 97 (506)
T PRK06481 60 DKYDIVIVGAGGAGMSAAIEAKDA-GMNPVILEKMPVAG 97 (506)
T ss_pred ccCCEEEECcCHHHHHHHHHHHHC-CCCEEEEECCCCCC
Confidence 579999999999999999999986 78999999998766
No 149
>COG0578 GlpA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=95.87 E-value=0.026 Score=65.11 Aligned_cols=76 Identities=25% Similarity=0.340 Sum_probs=56.3
Q ss_pred cCCCCcccchhhhhhhhccCCCCeEEEccceEeEEEEcCCCCeEEEEEEEE--CCeEEEEEeccEEEEccCCcCchHHHH
Q psy1205 496 TTRNGSRLSTSKAFLRPIISRNNLHILLNTTVTRVIVDPLTKAAIGVEFLT--NGRLERLQAKNEVIVCAGAVDSPRILL 573 (868)
Q Consensus 496 ~~~~g~R~s~~~~~L~~~~~~~nl~I~~~~~V~rIl~d~~~~~a~GV~~~~--~g~~~~v~A~k~VILAAGai~SP~LLl 573 (868)
+..+.+|...... ..+ ...+.+|++.++|++++.+ ++ ++||++.+ +|+++.++|+ .||-|||.. +-+|+.
T Consensus 159 ~~vddaRLv~~~a--~~A-~~~Ga~il~~~~v~~~~re--~~-v~gV~~~D~~tg~~~~ira~-~VVNAaGpW-~d~i~~ 230 (532)
T COG0578 159 GVVDDARLVAANA--RDA-AEHGAEILTYTRVESLRRE--GG-VWGVEVEDRETGETYEIRAR-AVVNAAGPW-VDEILE 230 (532)
T ss_pred ceechHHHHHHHH--HHH-Hhcccchhhcceeeeeeec--CC-EEEEEEEecCCCcEEEEEcC-EEEECCCcc-HHHHHH
Confidence 3345556655442 222 4578999999999999998 55 99999987 7899999996 799999965 566777
Q ss_pred hcCCCC
Q psy1205 574 LSGIGP 579 (868)
Q Consensus 574 ~SGIGp 579 (868)
..+..+
T Consensus 231 ~~~~~~ 236 (532)
T COG0578 231 MAGLEQ 236 (532)
T ss_pred hhcccC
Confidence 665443
No 150
>PRK11259 solA N-methyltryptophan oxidase; Provisional
Probab=95.87 E-value=0.0042 Score=70.03 Aligned_cols=35 Identities=29% Similarity=0.245 Sum_probs=32.4
Q ss_pred cceEEEECCCchhhhHHhhhhccCcccccccCCCCC
Q psy1205 61 DYDFIVIGGGSSGAVVANRLSEMNTCNCPVTQPGPT 96 (868)
Q Consensus 61 ~~d~~~~g~~~~~~~~a~~~~~~~~~~~LvlE~G~~ 96 (868)
.||+||||||.+|+.+|..|++. +++|+||||+..
T Consensus 3 ~~dv~IIGgGi~G~s~A~~L~~~-g~~V~lie~~~~ 37 (376)
T PRK11259 3 RYDVIVIGLGSMGSAAGYYLARR-GLRVLGLDRFMP 37 (376)
T ss_pred cccEEEECCCHHHHHHHHHHHHC-CCeEEEEecccC
Confidence 58999999999999999999987 689999999864
No 151
>PRK07121 hypothetical protein; Validated
Probab=95.86 E-value=0.0056 Score=71.78 Aligned_cols=39 Identities=23% Similarity=0.319 Sum_probs=35.3
Q ss_pred CCcceEEEECCCchhhhHHhhhhccCcccccccCCCCCcc
Q psy1205 59 DRDYDFIVIGGGSSGAVVANRLSEMNTCNCPVTQPGPTLA 98 (868)
Q Consensus 59 ~~~~d~~~~g~~~~~~~~a~~~~~~~~~~~LvlE~G~~LG 98 (868)
+.++|+||||+|.||+.+|.++++. +.+|+|||+...+|
T Consensus 18 ~~~~DVvVVGaG~AGl~AA~~aae~-G~~VillEK~~~~g 56 (492)
T PRK07121 18 DDEADVVVVGFGAAGACAAIEAAAA-GARVLVLERAAGAG 56 (492)
T ss_pred CCccCEEEECcCHHHHHHHHHHHHC-CCeEEEEeCCCCCC
Confidence 3579999999999999999999986 78999999998766
No 152
>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=95.86 E-value=0.0058 Score=69.96 Aligned_cols=36 Identities=25% Similarity=0.503 Sum_probs=33.0
Q ss_pred CcceEEEECCCchhhhHHhhhhccCcccccccCCCCC
Q psy1205 60 RDYDFIVIGGGSSGAVVANRLSEMNTCNCPVTQPGPT 96 (868)
Q Consensus 60 ~~~d~~~~g~~~~~~~~a~~~~~~~~~~~LvlE~G~~ 96 (868)
..||+||||||.+|+++|..|+.. +++|+||||.+.
T Consensus 17 ~~~dV~IvGaG~aGl~~A~~L~~~-G~~v~v~E~~~~ 52 (415)
T PRK07364 17 LTYDVAIVGGGIVGLTLAAALKDS-GLRIALIEAQPA 52 (415)
T ss_pred cccCEEEECcCHHHHHHHHHHhcC-CCEEEEEecCCc
Confidence 469999999999999999999986 799999999875
No 153
>TIGR03329 Phn_aa_oxid putative aminophosphonate oxidoreductase. This clade of sequences are members of the pfam01266 family of FAD-dependent oxidoreductases. Characterized proteins within this family include glycerol-3-phosphate dehydrogenase (1.1.99.5), sarcosine oxidase beta subunit (1.5.3.1) and a number of deaminating amino acid oxidases (1.4.-.-). These genes have been consistently observed in a genomic context including genes for the import and catabolism of 2-aminoethylphosphonate (AEP). If the substrate of this oxidoreductase is AEP itself, then it is probably acting in the manner of a deaminating oxidase, resulting in the same product (phosphonoacetaldehyde) as the transaminase PhnW (TIGR02326), but releasing ammonia instead of coupling to pyruvate:alanine. Alternatively, it is reasonable to suppose that the various ABC cassette transporters which are also associated with these loci allow the import of phosphonates closely related to AEP which may not be substrates for PhnW.
Probab=95.84 E-value=0.0055 Score=71.25 Aligned_cols=38 Identities=21% Similarity=0.302 Sum_probs=34.0
Q ss_pred CCCcceEEEECCCchhhhHHhhhhcc-CcccccccCCCC
Q psy1205 58 PDRDYDFIVIGGGSSGAVVANRLSEM-NTCNCPVTQPGP 95 (868)
Q Consensus 58 ~~~~~d~~~~g~~~~~~~~a~~~~~~-~~~~~LvlE~G~ 95 (868)
.+.++|++|||||.+|+.+|..|++. ++.+|+|||++.
T Consensus 21 ~~~~~DVvIIGgGi~Gls~A~~La~~~~G~~V~vlE~~~ 59 (460)
T TIGR03329 21 GDTQADVCIVGGGFTGLWTAIMIKQQRPALDVLVLEADL 59 (460)
T ss_pred CCceeCEEEECCCHHHHHHHHHHHHhCCCCeEEEEeCCc
Confidence 34579999999999999999999985 689999999975
No 154
>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1.1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....
Probab=95.83 E-value=0.0038 Score=69.42 Aligned_cols=34 Identities=24% Similarity=0.466 Sum_probs=31.2
Q ss_pred eEEEECCCchhhhHHhhhhccCcccccccCCCCCcc
Q psy1205 63 DFIVIGGGSSGAVVANRLSEMNTCNCPVTQPGPTLA 98 (868)
Q Consensus 63 d~~~~g~~~~~~~~a~~~~~~~~~~~LvlE~G~~LG 98 (868)
|+||||||.+|+.+|..|++. +.+|+|||++ .++
T Consensus 1 DvvIIGaGi~G~~~A~~La~~-G~~V~l~e~~-~~~ 34 (358)
T PF01266_consen 1 DVVIIGAGIAGLSTAYELARR-GHSVTLLERG-DIG 34 (358)
T ss_dssp EEEEECTSHHHHHHHHHHHHT-TSEEEEEESS-STT
T ss_pred CEEEECcCHHHHHHHHHHHHC-CCeEEEEeec-ccc
Confidence 899999999999999999994 7899999999 544
No 155
>PRK12266 glpD glycerol-3-phosphate dehydrogenase; Reviewed
Probab=95.83 E-value=0.0045 Score=72.74 Aligned_cols=54 Identities=19% Similarity=0.210 Sum_probs=40.9
Q ss_pred CCCCeEEEccceEeEEEEcCCCCeEEEEEEEE--CCeEEEEEeccEEEEccCCcCchHHHH
Q psy1205 515 SRNNLHILLNTTVTRVIVDPLTKAAIGVEFLT--NGRLERLQAKNEVIVCAGAVDSPRILL 573 (868)
Q Consensus 515 ~~~nl~I~~~~~V~rIl~d~~~~~a~GV~~~~--~g~~~~v~A~k~VILAAGai~SP~LLl 573 (868)
.+.+++++.++.|++|..+ ++ ..+|.+.+ +|+..+|+|+ .||+|||+. +.+|+-
T Consensus 166 ~~~Ga~i~~~~~V~~i~~~--~~-~~~v~~~~~~~g~~~~i~a~-~VVnAaG~w-a~~l~~ 221 (508)
T PRK12266 166 AERGAEILTRTRVVSARRE--NG-LWHVTLEDTATGKRYTVRAR-ALVNAAGPW-VKQFLD 221 (508)
T ss_pred HHcCCEEEcCcEEEEEEEe--CC-EEEEEEEEcCCCCEEEEEcC-EEEECCCcc-HHHHHh
Confidence 4568999999999999875 33 34676654 5667889995 899999975 556654
No 156
>PRK11445 putative oxidoreductase; Provisional
Probab=95.82 E-value=0.0043 Score=69.43 Aligned_cols=33 Identities=24% Similarity=0.376 Sum_probs=30.5
Q ss_pred ceEEEECCCchhhhHHhhhhccCcccccccCCCCC
Q psy1205 62 YDFIVIGGGSSGAVVANRLSEMNTCNCPVTQPGPT 96 (868)
Q Consensus 62 ~d~~~~g~~~~~~~~a~~~~~~~~~~~LvlE~G~~ 96 (868)
||++|||||+||+++|..|+.. ++|+||||-+.
T Consensus 2 ~dV~IvGaGpaGl~~A~~La~~--~~V~liE~~~~ 34 (351)
T PRK11445 2 YDVAIIGLGPAGSALARLLAGK--MKVIAIDKKHQ 34 (351)
T ss_pred ceEEEECCCHHHHHHHHHHhcc--CCEEEEECCCc
Confidence 8999999999999999999985 89999998764
No 157
>PRK12835 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=95.80 E-value=0.0069 Score=72.34 Aligned_cols=40 Identities=23% Similarity=0.362 Sum_probs=35.8
Q ss_pred CCCcceEEEECCCchhhhHHhhhhccCcccccccCCCCCcc
Q psy1205 58 PDRDYDFIVIGGGSSGAVVANRLSEMNTCNCPVTQPGPTLA 98 (868)
Q Consensus 58 ~~~~~d~~~~g~~~~~~~~a~~~~~~~~~~~LvlE~G~~LG 98 (868)
-+.++|+||||+|.||+++|.++++. +.+|+|||++..+|
T Consensus 8 ~~~~~DVvVVG~G~AGl~AA~~aae~-G~~VivlEk~~~~g 47 (584)
T PRK12835 8 FDREVDVLVVGSGGGGMTAALTAAAR-GLDTLVVEKSAHFG 47 (584)
T ss_pred ccCcCCEEEECccHHHHHHHHHHHHC-CCcEEEEEcCCCCC
Confidence 34579999999999999999999886 78999999998877
No 158
>PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=95.80 E-value=0.0051 Score=70.14 Aligned_cols=36 Identities=25% Similarity=0.457 Sum_probs=32.2
Q ss_pred cceEEEECCCchhhhHHhhhhcc-CcccccccCCCCC
Q psy1205 61 DYDFIVIGGGSSGAVVANRLSEM-NTCNCPVTQPGPT 96 (868)
Q Consensus 61 ~~d~~~~g~~~~~~~~a~~~~~~-~~~~~LvlE~G~~ 96 (868)
.||+||||||.+|+++|..|++. ++++|+|||+.+.
T Consensus 1 ~~dv~IvGaG~aGl~~A~~L~~~g~g~~v~liE~~~~ 37 (403)
T PRK07333 1 QCDVVIAGGGYVGLALAVALKQAAPHLPVTVVDAAPA 37 (403)
T ss_pred CCCEEEECccHHHHHHHHHHhcCCCCCEEEEEeCCCc
Confidence 38999999999999999999986 3699999999864
No 159
>TIGR01373 soxB sarcosine oxidase, beta subunit family, heterotetrameric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms.
Probab=95.79 E-value=0.0053 Score=70.14 Aligned_cols=39 Identities=33% Similarity=0.544 Sum_probs=33.5
Q ss_pred CCCCcceEEEECCCchhhhHHhhhhccCc-ccccccCCCC
Q psy1205 57 FPDRDYDFIVIGGGSSGAVVANRLSEMNT-CNCPVTQPGP 95 (868)
Q Consensus 57 ~~~~~~d~~~~g~~~~~~~~a~~~~~~~~-~~~LvlE~G~ 95 (868)
.+...||+||||||.+|+.+|..|++..+ .+|+||||+.
T Consensus 26 ~~~~~~dvvIIGgGi~G~s~A~~L~~~~g~~~V~vle~~~ 65 (407)
T TIGR01373 26 EPKPTYDVIIVGGGGHGLATAYYLAKEHGITNVAVLEKGW 65 (407)
T ss_pred CCCccCCEEEECCcHHHHHHHHHHHHhcCCCeEEEEEccc
Confidence 34567999999999999999999998435 5899999975
No 160
>PRK12837 3-ketosteroid-delta-1-dehydrogenase; Provisional
Probab=95.79 E-value=0.0053 Score=72.31 Aligned_cols=61 Identities=10% Similarity=0.170 Sum_probs=45.1
Q ss_pred CcccccccccccCCCCCCCccCCCCcEeccCCcEEeccC---CC-CCCC-CccchHHHHHHHHHHHHHHHH
Q psy1205 792 AENHQAGSCKMGPASDPSAVVSPELKVHGVDRLRVVDCS---IM-PAVT-SGNTNAPAIMIAEKASDLIKQ 857 (868)
Q Consensus 792 t~~H~~GTcrMG~~~dp~~VVD~~lrV~Gv~nL~V~DaS---v~-P~~~-~~NP~~Ti~alAeraAd~I~~ 857 (868)
..+|-+|++++- .+ .-|+|.++++ ++|||.+..- ++ ..-+ ++|.....+..+..|+.++..
T Consensus 445 ~~~~T~GGl~in--~~-~qVl~~~g~p--IpGLYAaG~~~gg~~g~~Y~~~G~~~~~a~~fGriAg~~aa~ 510 (513)
T PRK12837 445 SDLGTKGGLRTD--TA-ARVLDTDGRP--IPGLYAAGNTMAAVSGTTYPGGGNPIGASMLFSHLAALDMAG 510 (513)
T ss_pred ccceeCCCceEC--CC-ceEECCCCCE--eCCceecccccccccccCCCCCccchHHHHHHHHHHHHHHhc
Confidence 456778888875 22 2699999987 5999999763 44 2223 478889999999999998854
No 161
>TIGR01320 mal_quin_oxido malate:quinone-oxidoreductase. This membrane-associated enzyme is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in E. coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase.
Probab=95.78 E-value=0.026 Score=65.83 Aligned_cols=61 Identities=23% Similarity=0.226 Sum_probs=42.1
Q ss_pred cCCCCeEEEccceEeEEEEcCCCCeEEEEEEE--ECCeEEEEEeccEEEEccCCcCchHHHHhcCCC
Q psy1205 514 ISRNNLHILLNTTVTRVIVDPLTKAAIGVEFL--TNGRLERLQAKNEVIVCAGAVDSPRILLLSGIG 578 (868)
Q Consensus 514 ~~~~nl~I~~~~~V~rIl~d~~~~~a~GV~~~--~~g~~~~v~A~k~VILAAGai~SP~LLl~SGIG 578 (868)
.++.|++|+.++.|++|..++ ++.+ .|.+. ..+...+++|+ .||+|||+. +.+|+...|+.
T Consensus 188 a~~~Gv~i~~~t~V~~i~~~~-~~~v-~v~~~~~~~g~~~~i~A~-~VV~AAG~~-s~~La~~~Gi~ 250 (483)
T TIGR01320 188 LVQNGTTIRFGHEVRNLKRQS-DGSW-TVTVKNTRTGGKRTLNTR-FVFVGAGGG-ALPLLQKSGIP 250 (483)
T ss_pred HHhCCCEEEeCCEEEEEEEcC-CCeE-EEEEeeccCCceEEEECC-EEEECCCcc-hHHHHHHcCCC
Confidence 344689999999999998752 2222 23332 24545578885 799999974 67788777764
No 162
>PLN02985 squalene monooxygenase
Probab=95.74 E-value=0.0057 Score=71.81 Aligned_cols=37 Identities=24% Similarity=0.358 Sum_probs=33.0
Q ss_pred CCCcceEEEECCCchhhhHHhhhhccCcccccccCCCC
Q psy1205 58 PDRDYDFIVIGGGSSGAVVANRLSEMNTCNCPVTQPGP 95 (868)
Q Consensus 58 ~~~~~d~~~~g~~~~~~~~a~~~~~~~~~~~LvlE~G~ 95 (868)
.+..||+||||||.+||++|..|++. +.+|+||||..
T Consensus 40 ~~~~~DViIVGAG~aGlalA~aLa~~-G~~V~vlEr~~ 76 (514)
T PLN02985 40 KDGATDVIIVGAGVGGSALAYALAKD-GRRVHVIERDL 76 (514)
T ss_pred cCCCceEEEECCCHHHHHHHHHHHHc-CCeEEEEECcC
Confidence 34679999999999999999999986 78999999964
No 163
>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=95.73 E-value=0.0058 Score=69.32 Aligned_cols=36 Identities=31% Similarity=0.543 Sum_probs=32.3
Q ss_pred CcceEEEECCCchhhhHHhhhhccCcccccccCCCCC
Q psy1205 60 RDYDFIVIGGGSSGAVVANRLSEMNTCNCPVTQPGPT 96 (868)
Q Consensus 60 ~~~d~~~~g~~~~~~~~a~~~~~~~~~~~LvlE~G~~ 96 (868)
..||+||||||.+|+++|..|+.. +++|+|||+-..
T Consensus 6 ~~~dViIVGaG~~Gl~~A~~L~~~-G~~v~liE~~~~ 41 (388)
T PRK07494 6 EHTDIAVIGGGPAGLAAAIALARA-GASVALVAPEPP 41 (388)
T ss_pred CCCCEEEECcCHHHHHHHHHHhcC-CCeEEEEeCCCC
Confidence 358999999999999999999986 799999999764
No 164
>PRK07045 putative monooxygenase; Reviewed
Probab=95.73 E-value=0.0056 Score=69.47 Aligned_cols=36 Identities=19% Similarity=0.329 Sum_probs=33.0
Q ss_pred CcceEEEECCCchhhhHHhhhhccCcccccccCCCCC
Q psy1205 60 RDYDFIVIGGGSSGAVVANRLSEMNTCNCPVTQPGPT 96 (868)
Q Consensus 60 ~~~d~~~~g~~~~~~~~a~~~~~~~~~~~LvlE~G~~ 96 (868)
..||+||||||++|+++|..|++. +++|+|+||.+.
T Consensus 4 ~~~~V~IiGgGpaGl~~A~~L~~~-G~~v~v~E~~~~ 39 (388)
T PRK07045 4 NPVDVLINGSGIAGVALAHLLGAR-GHSVTVVERAAR 39 (388)
T ss_pred ceeEEEEECCcHHHHHHHHHHHhc-CCcEEEEeCCCc
Confidence 468999999999999999999986 799999999875
No 165
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=95.71 E-value=0.0057 Score=71.20 Aligned_cols=43 Identities=23% Similarity=0.302 Sum_probs=36.5
Q ss_pred cceEEEECCCchhhhHHhhhhccCcccccccCCCCCccccchhh
Q psy1205 61 DYDFIVIGGGSSGAVVANRLSEMNTCNCPVTQPGPTLASTCGGS 104 (868)
Q Consensus 61 ~~d~~~~g~~~~~~~~a~~~~~~~~~~~LvlE~G~~LGs~iN~~ 104 (868)
+||+||||||+||..+|.++++. +.+|+|||++.--|+|.|-+
T Consensus 4 ~~DvvIIG~GpaG~~AA~~aa~~-G~~V~lie~~~~GG~c~~~g 46 (466)
T PRK07818 4 HYDVVVLGAGPGGYVAAIRAAQL-GLKTAVVEKKYWGGVCLNVG 46 (466)
T ss_pred cCCEEEECCCHHHHHHHHHHHhC-CCeEEEEecCCCCCceecCC
Confidence 59999999999999999999986 78999999974334776654
No 166
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=95.71 E-value=0.0057 Score=71.13 Aligned_cols=40 Identities=30% Similarity=0.512 Sum_probs=35.0
Q ss_pred cceEEEECCCchhhhHHhhhhccCcccccccCCCCCcc-ccch
Q psy1205 61 DYDFIVIGGGSSGAVVANRLSEMNTCNCPVTQPGPTLA-STCG 102 (868)
Q Consensus 61 ~~d~~~~g~~~~~~~~a~~~~~~~~~~~LvlE~G~~LG-s~iN 102 (868)
.||+||||||++|..+|.+|++. +.+|+|||+ ..+| +|.|
T Consensus 3 ~yDvvIIG~G~aGl~aA~~l~~~-g~~v~lie~-~~~GG~~~~ 43 (460)
T PRK06292 3 KYDVIVIGAGPAGYVAARRAAKL-GKKVALIEK-GPLGGTCLN 43 (460)
T ss_pred cccEEEECCCHHHHHHHHHHHHC-CCeEEEEeC-Cccccceec
Confidence 59999999999999999999985 789999999 5576 6655
No 167
>PRK14727 putative mercuric reductase; Provisional
Probab=95.68 E-value=0.0066 Score=70.91 Aligned_cols=44 Identities=14% Similarity=0.213 Sum_probs=39.1
Q ss_pred CcceEEEECCCchhhhHHhhhhccCcccccccCCCCCcc-ccchhh
Q psy1205 60 RDYDFIVIGGGSSGAVVANRLSEMNTCNCPVTQPGPTLA-STCGGS 104 (868)
Q Consensus 60 ~~~d~~~~g~~~~~~~~a~~~~~~~~~~~LvlE~G~~LG-s~iN~~ 104 (868)
..||+||||+|++|..+|.+|++. +.+|+|+|++..+| +|.|-+
T Consensus 15 ~~~dvvvIG~G~aG~~~a~~~~~~-g~~v~~ie~~~~~GG~c~n~G 59 (479)
T PRK14727 15 LQLHVAIIGSGSAAFAAAIKAAEH-GARVTIIEGADVIGGCCVNVG 59 (479)
T ss_pred CCCcEEEECCCHHHHHHHHHHHhC-CCeEEEEEccCcceeEecccc
Confidence 469999999999999999999986 67999999997788 887754
No 168
>KOG3855|consensus
Probab=95.68 E-value=0.0069 Score=66.08 Aligned_cols=41 Identities=27% Similarity=0.537 Sum_probs=35.4
Q ss_pred CcceEEEECCCchhhhHHhhhhccCc---ccccccCCC--CCcccc
Q psy1205 60 RDYDFIVIGGGSSGAVVANRLSEMNT---CNCPVTQPG--PTLAST 100 (868)
Q Consensus 60 ~~~d~~~~g~~~~~~~~a~~~~~~~~---~~~LvlE~G--~~LGs~ 100 (868)
+.||+||||||+.|..+|..|..+|. +||+|||.| +.|++.
T Consensus 35 ~~~dVvIvGgGpvg~aLAa~l~snp~~~~~kv~Lld~~~s~kl~~~ 80 (481)
T KOG3855|consen 35 AKYDVVIVGGGPVGLALAAALGSNPPFQDKKVLLLDAGDSPKLGDF 80 (481)
T ss_pred ccCCEEEECCchHHHHHHHHhccCCccchheeeEEecccCcccccc
Confidence 38999999999999999999988764 799999999 556633
No 169
>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated
Probab=95.68 E-value=0.006 Score=69.34 Aligned_cols=36 Identities=22% Similarity=0.384 Sum_probs=32.4
Q ss_pred CcceEEEECCCchhhhHHhhhhccCcccccccCCCCC
Q psy1205 60 RDYDFIVIGGGSSGAVVANRLSEMNTCNCPVTQPGPT 96 (868)
Q Consensus 60 ~~~d~~~~g~~~~~~~~a~~~~~~~~~~~LvlE~G~~ 96 (868)
..||+||||||.+|+++|..|+.. +++|+||||.+.
T Consensus 5 ~~~dV~IvGaG~aGl~~A~~La~~-G~~v~liE~~~~ 40 (392)
T PRK08773 5 SRRDAVIVGGGVVGAACALALADA-GLSVALVEGREP 40 (392)
T ss_pred CCCCEEEECcCHHHHHHHHHHhcC-CCEEEEEeCCCC
Confidence 468999999999999999999986 789999999763
No 170
>COG1233 Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=95.68 E-value=0.0062 Score=71.17 Aligned_cols=38 Identities=26% Similarity=0.399 Sum_probs=34.8
Q ss_pred CcceEEEECCCchhhhHHhhhhccCcccccccCCCCCcc
Q psy1205 60 RDYDFIVIGGGSSGAVVANRLSEMNTCNCPVTQPGPTLA 98 (868)
Q Consensus 60 ~~~d~~~~g~~~~~~~~a~~~~~~~~~~~LvlE~G~~LG 98 (868)
..||+||||||..|+++|..|+.. +++|+||||-...|
T Consensus 2 ~~~dvvVIGaG~~GL~aAa~LA~~-G~~V~VlE~~~~~G 39 (487)
T COG1233 2 PMYDVVVIGAGLNGLAAAALLARA-GLKVTVLEKNDRVG 39 (487)
T ss_pred CCccEEEECCChhHHHHHHHHHhC-CCEEEEEEecCCCC
Confidence 358999999999999999999986 89999999988776
No 171
>PLN02464 glycerol-3-phosphate dehydrogenase
Probab=95.68 E-value=0.0058 Score=73.49 Aligned_cols=36 Identities=25% Similarity=0.366 Sum_probs=32.9
Q ss_pred CCcceEEEECCCchhhhHHhhhhccCcccccccCCCC
Q psy1205 59 DRDYDFIVIGGGSSGAVVANRLSEMNTCNCPVTQPGP 95 (868)
Q Consensus 59 ~~~~d~~~~g~~~~~~~~a~~~~~~~~~~~LvlE~G~ 95 (868)
+..||+||||||..|+.+|..|+.. +++|+|||++.
T Consensus 69 ~~~~DVvVIGGGi~Ga~~A~~lA~r-Gl~V~LvE~~d 104 (627)
T PLN02464 69 AEPLDVLVVGGGATGAGVALDAATR-GLRVGLVERED 104 (627)
T ss_pred CCccCEEEECCCHHHHHHHHHHHhC-CCEEEEEeccc
Confidence 3469999999999999999999986 79999999994
No 172
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=95.67 E-value=0.0053 Score=74.73 Aligned_cols=43 Identities=26% Similarity=0.295 Sum_probs=35.8
Q ss_pred cceEEEECCCchhhhHHhhhhccCcccccccCCCCCcc---ccchhh
Q psy1205 61 DYDFIVIGGGSSGAVVANRLSEMNTCNCPVTQPGPTLA---STCGGS 104 (868)
Q Consensus 61 ~~d~~~~g~~~~~~~~a~~~~~~~~~~~LvlE~G~~LG---s~iN~~ 104 (868)
.+|+||||||.+|+.+|..|++. +++|+||||+..++ |..|++
T Consensus 260 ~~dVvIIGaGIaG~s~A~~La~~-G~~V~VlE~~~~~~~gaSg~~~G 305 (662)
T PRK01747 260 ARDAAIIGGGIAGAALALALARR-GWQVTLYEADEAPAQGASGNRQG 305 (662)
T ss_pred CCCEEEECccHHHHHHHHHHHHC-CCeEEEEecCCCccccCCcCccc
Confidence 48999999999999999999986 78999999986543 554433
No 173
>PLN02697 lycopene epsilon cyclase
Probab=95.66 E-value=0.0062 Score=71.30 Aligned_cols=36 Identities=28% Similarity=0.479 Sum_probs=32.0
Q ss_pred CCcceEEEECCCchhhhHHhhhhccCcccccccCCCC
Q psy1205 59 DRDYDFIVIGGGSSGAVVANRLSEMNTCNCPVTQPGP 95 (868)
Q Consensus 59 ~~~~d~~~~g~~~~~~~~a~~~~~~~~~~~LvlE~G~ 95 (868)
+..||+||||||+||+.+|..|++. +++|+|||++.
T Consensus 106 ~~~~DVvIVGaGPAGLalA~~Lak~-Gl~V~LIe~~~ 141 (529)
T PLN02697 106 DGTLDLVVIGCGPAGLALAAESAKL-GLNVGLIGPDL 141 (529)
T ss_pred cCcccEEEECcCHHHHHHHHHHHhC-CCcEEEecCcc
Confidence 4579999999999999999999976 79999999753
No 174
>TIGR01377 soxA_mon sarcosine oxidase, monomeric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=95.66 E-value=0.0055 Score=69.21 Aligned_cols=34 Identities=24% Similarity=0.332 Sum_probs=31.2
Q ss_pred ceEEEECCCchhhhHHhhhhccCcccccccCCCCC
Q psy1205 62 YDFIVIGGGSSGAVVANRLSEMNTCNCPVTQPGPT 96 (868)
Q Consensus 62 ~d~~~~g~~~~~~~~a~~~~~~~~~~~LvlE~G~~ 96 (868)
||+||||||.+|+.+|..|++. +++|+|||++..
T Consensus 1 ~dvvIIGaGi~G~s~A~~La~~-g~~V~l~e~~~~ 34 (380)
T TIGR01377 1 FDVIVVGAGIMGCFAAYHLAKH-GKKTLLLEQFDL 34 (380)
T ss_pred CcEEEECCCHHHHHHHHHHHHC-CCeEEEEeccCC
Confidence 7999999999999999999986 689999999763
No 175
>KOG0405|consensus
Probab=95.65 E-value=0.01 Score=63.32 Aligned_cols=46 Identities=26% Similarity=0.443 Sum_probs=37.8
Q ss_pred CCCcceEEEECCCchhhhHHhhhhccCcccccccCCCCCcc-ccchhh
Q psy1205 58 PDRDYDFIVIGGGSSGAVVANRLSEMNTCNCPVTQPGPTLA-STCGGS 104 (868)
Q Consensus 58 ~~~~~d~~~~g~~~~~~~~a~~~~~~~~~~~LvlE~G~~LG-s~iN~~ 104 (868)
....|||+|||||++|...|.|-++. +.||.|+|...-|| +|+|-+
T Consensus 17 ~~k~fDylvIGgGSGGvasARrAa~~-GAkv~l~E~~f~lGGTCVn~G 63 (478)
T KOG0405|consen 17 DVKDFDYLVIGGGSGGVASARRAASH-GAKVALCELPFGLGGTCVNVG 63 (478)
T ss_pred cccccceEEEcCCcchhHHhHHHHhc-CceEEEEecCCCcCceEEeec
Confidence 34589999999999987777666654 89999999997787 888854
No 176
>PTZ00052 thioredoxin reductase; Provisional
Probab=95.60 E-value=0.0063 Score=71.39 Aligned_cols=45 Identities=24% Similarity=0.325 Sum_probs=37.1
Q ss_pred cceEEEECCCchhhhHHhhhhccCcccccccCCC-----C---Ccc-ccchhhHH
Q psy1205 61 DYDFIVIGGGSSGAVVANRLSEMNTCNCPVTQPG-----P---TLA-STCGGSAY 106 (868)
Q Consensus 61 ~~d~~~~g~~~~~~~~a~~~~~~~~~~~LvlE~G-----~---~LG-s~iN~~~y 106 (868)
.||+||||||+||..+|.++++. +.+|+|||++ . .|| +|+|-+.+
T Consensus 5 ~yDviVIG~GpaG~~AA~~aa~~-G~~V~lie~~~~~~~~~~~~~GG~C~n~gci 58 (499)
T PTZ00052 5 MYDLVVIGGGSGGMAAAKEAAAH-GKKVALFDYVKPSTQGTKWGLGGTCVNVGCV 58 (499)
T ss_pred ccCEEEECCCHHHHHHHHHHHhC-CCeEEEEeccCCCCccccccccceecccccc
Confidence 59999999999999999999986 7899999973 1 377 77775443
No 177
>PRK08274 tricarballylate dehydrogenase; Validated
Probab=95.60 E-value=0.0062 Score=70.98 Aligned_cols=36 Identities=25% Similarity=0.377 Sum_probs=32.5
Q ss_pred CcceEEEECCCchhhhHHhhhhccCcccccccCCCCC
Q psy1205 60 RDYDFIVIGGGSSGAVVANRLSEMNTCNCPVTQPGPT 96 (868)
Q Consensus 60 ~~~d~~~~g~~~~~~~~a~~~~~~~~~~~LvlE~G~~ 96 (868)
.++|+||||+|.+|+.+|.++++. +.+|+|||+++.
T Consensus 3 ~~~DVvVVG~G~aGl~AA~~aa~~-G~~V~vlEk~~~ 38 (466)
T PRK08274 3 SMVDVLVIGGGNAALCAALAAREA-GASVLLLEAAPR 38 (466)
T ss_pred ccCCEEEECCCHHHHHHHHHHHHC-CCeEEEEeCCCC
Confidence 358999999999999999999986 689999999873
No 178
>PRK08013 oxidoreductase; Provisional
Probab=95.59 E-value=0.0068 Score=69.11 Aligned_cols=35 Identities=26% Similarity=0.348 Sum_probs=32.1
Q ss_pred cceEEEECCCchhhhHHhhhhccCcccccccCCCCC
Q psy1205 61 DYDFIVIGGGSSGAVVANRLSEMNTCNCPVTQPGPT 96 (868)
Q Consensus 61 ~~d~~~~g~~~~~~~~a~~~~~~~~~~~LvlE~G~~ 96 (868)
.||+||||||.+|+++|..|+.. +++|+|||+.+.
T Consensus 3 ~~dV~IvGaGpaGl~~A~~La~~-G~~v~viE~~~~ 37 (400)
T PRK08013 3 SVDVVIAGGGMVGLAVACGLQGS-GLRVAVLEQRVP 37 (400)
T ss_pred cCCEEEECcCHHHHHHHHHHhhC-CCEEEEEeCCCC
Confidence 48999999999999999999875 799999999874
No 179
>TIGR01790 carotene-cycl lycopene cyclase family protein. This family includes lycopene beta and epsilion cyclases (which form beta and delta carotene, respectively) from bacteria and plants as well as the plant capsanthin/capsorubin and neoxanthin cyclases which appear to have evolved from the plant lycopene cyclases. The plant lycopene epsilon cyclases also transform neurosporene to alpha zeacarotene.
Probab=95.53 E-value=0.0074 Score=68.43 Aligned_cols=33 Identities=33% Similarity=0.611 Sum_probs=30.4
Q ss_pred eEEEECCCchhhhHHhhhhccCcccccccCCCCC
Q psy1205 63 DFIVIGGGSSGAVVANRLSEMNTCNCPVTQPGPT 96 (868)
Q Consensus 63 d~~~~g~~~~~~~~a~~~~~~~~~~~LvlE~G~~ 96 (868)
|+||||+|.||+.+|..|++. +.+|+|||+.+.
T Consensus 1 DviIiGaG~AGl~~A~~la~~-g~~v~liE~~~~ 33 (388)
T TIGR01790 1 DLAVIGGGPAGLAIALELARP-GLRVQLIEPHPP 33 (388)
T ss_pred CEEEECCCHHHHHHHHHHHhC-CCeEEEEccCCC
Confidence 899999999999999999865 899999999875
No 180
>PRK00711 D-amino acid dehydrogenase small subunit; Validated
Probab=95.50 E-value=0.0061 Score=69.81 Aligned_cols=41 Identities=24% Similarity=0.306 Sum_probs=34.3
Q ss_pred eEEEECCCchhhhHHhhhhccCcccccccCCCCCcc---ccchhh
Q psy1205 63 DFIVIGGGSSGAVVANRLSEMNTCNCPVTQPGPTLA---STCGGS 104 (868)
Q Consensus 63 d~~~~g~~~~~~~~a~~~~~~~~~~~LvlE~G~~LG---s~iN~~ 104 (868)
|+||||||.+|+.+|..|++. +.+|+|||++...+ |..|++
T Consensus 2 ~v~IVG~Gi~Gls~A~~l~~~-g~~V~vle~~~~~~~~aS~~n~g 45 (416)
T PRK00711 2 RVVVLGSGVIGVTSAWYLAQA-GHEVTVIDRQPGPALETSFANAG 45 (416)
T ss_pred EEEEECCcHHHHHHHHHHHHC-CCEEEEEeCCCchhhhheeccCc
Confidence 799999999999999999986 78999999986543 445543
No 181
>PRK12842 putative succinate dehydrogenase; Reviewed
Probab=95.49 E-value=0.01 Score=70.85 Aligned_cols=67 Identities=15% Similarity=0.142 Sum_probs=48.4
Q ss_pred CcccccccccccCCCCCC-CccCCCCcEeccCCcEEec---cCCCCC-CC-CccchHHHHHHHHHHHHHHHHHhccccc
Q psy1205 792 AENHQAGSCKMGPASDPS-AVVSPELKVHGVDRLRVVD---CSIMPA-VT-SGNTNAPAIMIAEKASDLIKQQWIGKRA 864 (868)
Q Consensus 792 t~~H~~GTcrMG~~~dp~-~VVD~~lrV~Gv~nL~V~D---aSv~P~-~~-~~NP~~Ti~alAeraAd~I~~~~~~~~~ 864 (868)
...+-+|+.++- .+ -|+|.++++ ++|||.+. ++++-. -+ .++.....+..+..|++++.+..+.++.
T Consensus 500 ~~~~T~GGl~id----~~~qVld~~g~p--IpGLYAaG~~~gg~~g~~y~~~G~~lg~a~~fGriAg~~aa~~~~~~~~ 572 (574)
T PRK12842 500 GDLGTFDGLRTD----VTGEVLDADGTP--IAGLYAVGNDRASIMGGNYPGAGITLGPIMTFGYITGRHLAGVAGGRKL 572 (574)
T ss_pred cccccCCCcCCC----CCceEECCCCCC--cCCceecccccccCccCCCCCCcccHHHHHHHHHHHHHHHHhhhccccc
Confidence 355666777653 33 689988886 69999998 345432 12 3788899999999999999887665543
No 182
>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=95.48 E-value=0.0081 Score=68.57 Aligned_cols=34 Identities=24% Similarity=0.441 Sum_probs=31.4
Q ss_pred cceEEEECCCchhhhHHhhhhccCcccccccCCCC
Q psy1205 61 DYDFIVIGGGSSGAVVANRLSEMNTCNCPVTQPGP 95 (868)
Q Consensus 61 ~~d~~~~g~~~~~~~~a~~~~~~~~~~~LvlE~G~ 95 (868)
+||++|||||.+|+++|..|+.. +++|.|||+.+
T Consensus 2 ~~dV~IVGaG~aGl~~A~~L~~~-G~~v~viE~~~ 35 (405)
T PRK05714 2 RADLLIVGAGMVGSALALALQGS-GLEVLLLDGGP 35 (405)
T ss_pred CccEEEECccHHHHHHHHHHhcC-CCEEEEEcCCC
Confidence 58999999999999999999875 79999999976
No 183
>TIGR03364 HpnW_proposed FAD dependent oxidoreductase TIGR03364. This clade of FAD dependent oxidoreductases (members of the pfam01266 family) is syntenically associated with a family of proposed phosphonatase-like enzymes (TIGR03351) and is also found (less frequently) in association with phosphonate transporter components. A likely role for this enzyme involves the oxidative deamination of an aminophosphonate differring slightly from 2-aminoethylphosphonate, possibly 1-hydroxy-2-aminoethylphosphonate (see the comments for TIGR03351). Many members of the larger FAD dependent oxidoreductase family act as amino acid oxidative deaminases.
Probab=95.47 E-value=0.007 Score=68.00 Aligned_cols=34 Identities=24% Similarity=0.389 Sum_probs=31.3
Q ss_pred ceEEEECCCchhhhHHhhhhccCcccccccCCCCC
Q psy1205 62 YDFIVIGGGSSGAVVANRLSEMNTCNCPVTQPGPT 96 (868)
Q Consensus 62 ~d~~~~g~~~~~~~~a~~~~~~~~~~~LvlE~G~~ 96 (868)
||+||||||.+|+.+|..|++. +.+|+|||++..
T Consensus 1 ~dv~IIG~Gi~G~s~A~~L~~~-G~~V~vle~~~~ 34 (365)
T TIGR03364 1 YDLIIVGAGILGLAHAYAAARR-GLSVTVIERSSR 34 (365)
T ss_pred CCEEEECCCHHHHHHHHHHHHC-CCeEEEEeCCCC
Confidence 6999999999999999999986 789999999863
No 184
>PRK12844 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=95.45 E-value=0.0081 Score=71.38 Aligned_cols=39 Identities=21% Similarity=0.390 Sum_probs=35.3
Q ss_pred CCcceEEEECCCchhhhHHhhhhccCcccccccCCCCCcc
Q psy1205 59 DRDYDFIVIGGGSSGAVVANRLSEMNTCNCPVTQPGPTLA 98 (868)
Q Consensus 59 ~~~~d~~~~g~~~~~~~~a~~~~~~~~~~~LvlE~G~~LG 98 (868)
+.+||+||||+|.+|+.+|.++++. +.+|+|||+.+.+|
T Consensus 4 d~~~DvvIiG~G~aGl~aA~~~a~~-G~~v~liEk~~~~g 42 (557)
T PRK12844 4 DETYDVVVVGSGGGGMCAALAAADS-GLEPLIVEKQDKVG 42 (557)
T ss_pred CCcCCEEEECcCHHHHHHHHHHHHC-CCcEEEEecCCCCC
Confidence 4579999999999999999999986 68999999988776
No 185
>TIGR01989 COQ6 Ubiquinone biosynthesis mono0xygenase COQ6. This model represents the monooxygenase responsible for the 4-hydroxylateion of the phenol ring in the aerobic biosynthesis of ubiquinone
Probab=95.39 E-value=0.0079 Score=69.43 Aligned_cols=34 Identities=21% Similarity=0.450 Sum_probs=30.7
Q ss_pred ceEEEECCCchhhhHHhhhhcc---CcccccccCCCC
Q psy1205 62 YDFIVIGGGSSGAVVANRLSEM---NTCNCPVTQPGP 95 (868)
Q Consensus 62 ~d~~~~g~~~~~~~~a~~~~~~---~~~~~LvlE~G~ 95 (868)
||+||||||.+|+++|..|++. .+++|+|||+.+
T Consensus 1 ~DV~IVGaGp~Gl~~A~~La~~~~~~G~~v~viE~~~ 37 (437)
T TIGR01989 1 FDVVIVGGGPVGLALAAALGNNPLTKDLKVLLLDAVD 37 (437)
T ss_pred CcEEEECCcHHHHHHHHHHhcCcccCCCeEEEEeCCC
Confidence 7999999999999999999973 378999999954
No 186
>TIGR02730 carot_isom carotene isomerase. Members of this family, including sll0033 (crtH) of Synechocystis sp. PCC 6803, catalyze a cis-trans isomerization of carotenes to the all-trans lycopene, a reaction that can also occur non-enzymatically in light through photoisomerization.
Probab=95.38 E-value=0.0084 Score=70.35 Aligned_cols=58 Identities=26% Similarity=0.392 Sum_probs=43.6
Q ss_pred hhhccCCCCeEEEccceEeEEEEcCCCCeEEEEEEEECCeEEEEEeccEEEEccCCcCchHHHH
Q psy1205 510 LRPIISRNNLHILLNTTVTRVIVDPLTKAAIGVEFLTNGRLERLQAKNEVIVCAGAVDSPRILL 573 (868)
Q Consensus 510 L~~~~~~~nl~I~~~~~V~rIl~d~~~~~a~GV~~~~~g~~~~v~A~k~VILAAGai~SP~LLl 573 (868)
|....++.+.+|++++.|++|+.+ ++++.||... +|+ ++.|+ .||+++|...+=+.|+
T Consensus 235 L~~~~~~~G~~i~~~~~V~~I~~~--~~~~~gv~~~-~g~--~~~ad-~vV~a~~~~~~~~~Ll 292 (493)
T TIGR02730 235 LVKGLEKHGGQIRYRARVTKIILE--NGKAVGVKLA-DGE--KIYAK-RIVSNATRWDTFGKLL 292 (493)
T ss_pred HHHHHHHCCCEEEeCCeeeEEEec--CCcEEEEEeC-CCC--EEEcC-EEEECCChHHHHHHhC
Confidence 444456678999999999999987 5788888754 443 46785 6999999877765554
No 187
>PF00890 FAD_binding_2: FAD binding domain of the Pfam family.; InterPro: IPR003953 In bacteria two distinct, membrane-bound, enzyme complexes are responsible for the interconversion of fumarate and succinate (1.3.99.1 from EC): fumarate reductase (Frd) is used in anaerobic growth, and succinate dehydrogenase (Sdh) is used in aerobic growth. Both complexes consist of two main components: a membrane-extrinsic component composed of a FAD-binding flavoprotein and an iron-sulphur protein; and an hydrophobic component composed of a membrane anchor protein and/or a cytochrome B. In eukaryotes mitochondrial succinate dehydrogenase (ubiquinone) (1.3.5.1 from EC) is an enzyme composed of two subunits: a FAD flavoprotein and and iron-sulphur protein. The flavoprotein subunit is a protein of about 60 to 70 Kd to which FAD is covalently bound to a histidine residue which is located in the N-terminal section of the protein []. The sequence around that histidine is well conserved in Frd and Sdh from various bacterial and eukaryotic species []. This family includes members that bind FAD such as the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase. ; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2BS4_A 2BS3_A 2BS2_A 1E7P_J 1QLB_A 1KNR_A 1KNP_A 1CHU_A 2E5V_A 3AEF_A ....
Probab=95.37 E-value=0.0068 Score=69.48 Aligned_cols=35 Identities=34% Similarity=0.589 Sum_probs=30.7
Q ss_pred eEEEECCCchhhhHHhhhhccCcccccccCCCCCcc
Q psy1205 63 DFIVIGGGSSGAVVANRLSEMNTCNCPVTQPGPTLA 98 (868)
Q Consensus 63 d~~~~g~~~~~~~~a~~~~~~~~~~~LvlE~G~~LG 98 (868)
|+||||+|.||+++|.++++. +.+|+|||+++.+|
T Consensus 1 DVvVIG~G~AGl~AA~~Aae~-G~~V~lvek~~~~g 35 (417)
T PF00890_consen 1 DVVVIGGGLAGLAAAIEAAEA-GAKVLLVEKGPRLG 35 (417)
T ss_dssp SEEEE-SSHHHHHHHHHHHHT-TT-EEEEESSSGGG
T ss_pred CEEEECCCHHHHHHHHHHhhh-cCeEEEEEeecccc
Confidence 899999999999999999996 67999999999866
No 188
>PTZ00367 squalene epoxidase; Provisional
Probab=95.35 E-value=0.016 Score=68.57 Aligned_cols=35 Identities=31% Similarity=0.513 Sum_probs=32.2
Q ss_pred CcceEEEECCCchhhhHHhhhhccCcccccccCCCC
Q psy1205 60 RDYDFIVIGGGSSGAVVANRLSEMNTCNCPVTQPGP 95 (868)
Q Consensus 60 ~~~d~~~~g~~~~~~~~a~~~~~~~~~~~LvlE~G~ 95 (868)
..||+||||||.+|+++|..|++. +.+|+||||..
T Consensus 32 ~~~dViIVGaGiaGlalA~aLar~-G~~V~VlEr~~ 66 (567)
T PTZ00367 32 YDYDVIIVGGSIAGPVLAKALSKQ-GRKVLMLERDL 66 (567)
T ss_pred cCccEEEECCCHHHHHHHHHHHhc-CCEEEEEcccc
Confidence 469999999999999999999986 78999999975
No 189
>PRK06996 hypothetical protein; Provisional
Probab=95.32 E-value=0.011 Score=67.47 Aligned_cols=36 Identities=19% Similarity=0.431 Sum_probs=31.7
Q ss_pred CcceEEEECCCchhhhHHhhhhccC---cccccccCCCC
Q psy1205 60 RDYDFIVIGGGSSGAVVANRLSEMN---TCNCPVTQPGP 95 (868)
Q Consensus 60 ~~~d~~~~g~~~~~~~~a~~~~~~~---~~~~LvlE~G~ 95 (868)
..||++|||||++|+.+|..|+... +++|+|+|+..
T Consensus 10 ~~~dv~IvGgGpaG~~~A~~L~~~g~~~g~~v~l~e~~~ 48 (398)
T PRK06996 10 PDFDIAIVGAGPVGLALAGWLARRSATRALSIALIDARE 48 (398)
T ss_pred CCCCEEEECcCHHHHHHHHHHhcCCCcCCceEEEecCCC
Confidence 4699999999999999999999864 36799999975
No 190
>COG2081 Predicted flavoproteins [General function prediction only]
Probab=95.24 E-value=0.015 Score=63.71 Aligned_cols=88 Identities=18% Similarity=0.281 Sum_probs=53.5
Q ss_pred HHHHHHHHHCCCCCCCCCCCCcceeeeeeccCCCCcccchhhhhhhhccCCCCeEEEccceEeEEEEcCCCCeEEEEEEE
Q psy1205 466 HSILQGAMELGMPVRDLNGVSHTGFMIAQTTTRNGSRLSTSKAFLRPIISRNNLHILLNTTVTRVIVDPLTKAAIGVEFL 545 (868)
Q Consensus 466 ~~~~~a~~~lG~~~~~~n~~~~~G~~~~~~~~~~g~R~s~~~~~L~~~~~~~nl~I~~~~~V~rIl~d~~~~~a~GV~~~ 545 (868)
+.++..++.+|+++..-. .|--. |. -.+.+.....|....++.|++|++++.|..|..++ .+-.+.
T Consensus 82 ~d~i~~~e~~Gi~~~e~~----~Gr~F----p~-sdkA~~Iv~~ll~~~~~~gV~i~~~~~v~~v~~~~-----~~f~l~ 147 (408)
T COG2081 82 EDFIDWVEGLGIALKEED----LGRMF----PD-SDKASPIVDALLKELEALGVTIRTRSRVSSVEKDD-----SGFRLD 147 (408)
T ss_pred HHHHHHHHhcCCeeEEcc----Cceec----CC-ccchHHHHHHHHHHHHHcCcEEEecceEEeEEecC-----ceEEEE
Confidence 567777788898872111 11111 11 01122222333344567899999999999998873 122222
Q ss_pred E-CCeEEEEEeccEEEEccCCcCchH
Q psy1205 546 T-NGRLERLQAKNEVIVCAGAVDSPR 570 (868)
Q Consensus 546 ~-~g~~~~v~A~k~VILAAGai~SP~ 570 (868)
. +|. +|+++ .+|||+|+.--|+
T Consensus 148 t~~g~--~i~~d-~lilAtGG~S~P~ 170 (408)
T COG2081 148 TSSGE--TVKCD-SLILATGGKSWPK 170 (408)
T ss_pred cCCCC--EEEcc-EEEEecCCcCCCC
Confidence 2 444 78886 6999999988885
No 191
>KOG0042|consensus
Probab=95.23 E-value=0.014 Score=65.75 Aligned_cols=85 Identities=20% Similarity=0.270 Sum_probs=63.5
Q ss_pred CCCcceeeeeeccCCCCcccchhhhhhhhccCCCCeEEEccceEeEEEEcCCCCeEEEEEEEE--CCeEEEEEeccEEEE
Q psy1205 484 GVSHTGFMIAQTTTRNGSRLSTSKAFLRPIISRNNLHILLNTTVTRVIVDPLTKAAIGVEFLT--NGRLERLQAKNEVIV 561 (868)
Q Consensus 484 ~~~~~G~~~~~~~~~~g~R~s~~~~~L~~~~~~~nl~I~~~~~V~rIl~d~~~~~a~GV~~~~--~g~~~~v~A~k~VIL 561 (868)
..+.+|....--+..|-+|.....+ |. +.+.+.++.-...|.+|+.++ ++++.|+++++ .|+++.|+| |.||=
T Consensus 207 ~~~L~Ga~VYyDGQ~nDaRmnl~vA-lT--A~r~GA~v~Nh~ev~~Llkd~-~~kv~Ga~~rD~iTG~e~~I~A-k~VVN 281 (680)
T KOG0042|consen 207 KDNLKGAMVYYDGQHNDARMNLAVA-LT--AARNGATVLNHVEVVSLLKDK-DGKVIGARARDHITGKEYEIRA-KVVVN 281 (680)
T ss_pred ccCceeEEEEecCCCchHHHHHHHH-HH--HHhcchhhhhHHHHHHHhhCC-CCceeeeEEEEeecCcEEEEEE-EEEEe
Confidence 3445555555555667777766654 22 246789999999999999885 56899999988 899999999 58999
Q ss_pred ccCCcCchHHHH
Q psy1205 562 CAGAVDSPRILL 573 (868)
Q Consensus 562 AAGai~SP~LLl 573 (868)
|+|-|.-.-..|
T Consensus 282 ATGpfsDsIr~M 293 (680)
T KOG0042|consen 282 ATGPFSDSIRKM 293 (680)
T ss_pred CCCCccHHHHhh
Confidence 999886554444
No 192
>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family. This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki
Probab=95.22 E-value=0.01 Score=67.10 Aligned_cols=33 Identities=24% Similarity=0.509 Sum_probs=30.8
Q ss_pred eEEEECCCchhhhHHhhhhccCcccccccCCCCC
Q psy1205 63 DFIVIGGGSSGAVVANRLSEMNTCNCPVTQPGPT 96 (868)
Q Consensus 63 d~~~~g~~~~~~~~a~~~~~~~~~~~LvlE~G~~ 96 (868)
|+||||||.+|+++|..|++. +++|+|+||.+.
T Consensus 1 dViIvGaG~aGl~~A~~L~~~-G~~v~v~Er~~~ 33 (385)
T TIGR01988 1 DIVIVGGGMVGLALALALARS-GLKIALIEATPA 33 (385)
T ss_pred CEEEECCCHHHHHHHHHHhcC-CCEEEEEeCCCc
Confidence 799999999999999999986 799999999985
No 193
>PTZ00383 malate:quinone oxidoreductase; Provisional
Probab=95.22 E-value=0.066 Score=62.44 Aligned_cols=53 Identities=25% Similarity=0.280 Sum_probs=39.7
Q ss_pred CeEEEccceEeEEEEcCCCCeEEEEEEEECCeEEEEEeccEEEEccCCcCchHHHHhcCCC
Q psy1205 518 NLHILLNTTVTRVIVDPLTKAAIGVEFLTNGRLERLQAKNEVIVCAGAVDSPRILLLSGIG 578 (868)
Q Consensus 518 nl~I~~~~~V~rIl~d~~~~~a~GV~~~~~g~~~~v~A~k~VILAAGai~SP~LLl~SGIG 578 (868)
+++|++++.|+.|..+ ++....|.. .+| +++|+ .||+|||+. |.+|+..+|++
T Consensus 231 ~v~i~~~t~V~~I~~~--~~~~~~V~T-~~G---~i~A~-~VVvaAG~~-S~~La~~~Gi~ 283 (497)
T PTZ00383 231 KISINLNTEVLNIERS--NDSLYKIHT-NRG---EIRAR-FVVVSACGY-SLLFAQKMGYG 283 (497)
T ss_pred CEEEEeCCEEEEEEec--CCCeEEEEE-CCC---EEEeC-EEEECcChh-HHHHHHHhCCC
Confidence 3899999999999876 344444432 234 58896 799999975 88899988864
No 194
>TIGR03452 mycothione_red mycothione reductase. Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.
Probab=95.21 E-value=0.011 Score=68.64 Aligned_cols=40 Identities=23% Similarity=0.478 Sum_probs=33.1
Q ss_pred cceEEEECCCchhhhHHhhhhccCcccccccCCCCCcc-ccchhh
Q psy1205 61 DYDFIVIGGGSSGAVVANRLSEMNTCNCPVTQPGPTLA-STCGGS 104 (868)
Q Consensus 61 ~~d~~~~g~~~~~~~~a~~~~~~~~~~~LvlE~G~~LG-s~iN~~ 104 (868)
.||+||||+|++|..+|.++. +.||+|+|++. || +|+|-+
T Consensus 2 ~yD~vvIG~G~~g~~aa~~~~---g~~V~lie~~~-~GGtC~n~G 42 (452)
T TIGR03452 2 HYDLIIIGTGSGNSIPDPRFA---DKRIAIVEKGT-FGGTCLNVG 42 (452)
T ss_pred CcCEEEECCCHHHHHHHHHHC---CCeEEEEeCCC-CCCeeeccC
Confidence 599999999999988876652 78999999954 66 888755
No 195
>KOG2665|consensus
Probab=95.19 E-value=0.012 Score=61.80 Aligned_cols=39 Identities=33% Similarity=0.520 Sum_probs=36.1
Q ss_pred CcceEEEECCCchhhhHHhhhhc-cCcccccccCCCCCcc
Q psy1205 60 RDYDFIVIGGGSSGAVVANRLSE-MNTCNCPVTQPGPTLA 98 (868)
Q Consensus 60 ~~~d~~~~g~~~~~~~~a~~~~~-~~~~~~LvlE~G~~LG 98 (868)
..||.+|||||..||.+|..|+- .|..+|+|||+--+|+
T Consensus 47 ~~~D~VvvGgGiVGlAsARel~lrhp~l~V~vleke~~la 86 (453)
T KOG2665|consen 47 ERYDLVVVGGGIVGLASARELSLRHPSLKVAVLEKEKSLA 86 (453)
T ss_pred ccccEEEECCceeehhhhHHHhhcCCCceEEeeehhhhhc
Confidence 57999999999999999999985 6899999999998877
No 196
>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=95.18 E-value=0.01 Score=67.17 Aligned_cols=34 Identities=32% Similarity=0.538 Sum_probs=31.0
Q ss_pred cceEEEECCCchhhhHHhhhhccCcccccccCCCC
Q psy1205 61 DYDFIVIGGGSSGAVVANRLSEMNTCNCPVTQPGP 95 (868)
Q Consensus 61 ~~d~~~~g~~~~~~~~a~~~~~~~~~~~LvlE~G~ 95 (868)
+||++|||||.+|+++|..|++. +++|+|+|+.+
T Consensus 3 ~~dv~IvGgG~aGl~~A~~L~~~-G~~v~l~E~~~ 36 (384)
T PRK08849 3 KYDIAVVGGGMVGAATALGFAKQ-GRSVAVIEGGE 36 (384)
T ss_pred cccEEEECcCHHHHHHHHHHHhC-CCcEEEEcCCC
Confidence 48999999999999999999986 79999999764
No 197
>PRK06185 hypothetical protein; Provisional
Probab=95.15 E-value=0.011 Score=67.64 Aligned_cols=59 Identities=22% Similarity=0.266 Sum_probs=42.2
Q ss_pred CCCCeEEEccceEeEEEEcCCCCeEEEEEEEECCeEEEEEeccEEEEccCCcCchHHHHhcCCC
Q psy1205 515 SRNNLHILLNTTVTRVIVDPLTKAAIGVEFLTNGRLERLQAKNEVIVCAGAVDSPRILLLSGIG 578 (868)
Q Consensus 515 ~~~nl~I~~~~~V~rIl~d~~~~~a~GV~~~~~g~~~~v~A~k~VILAAGai~SP~LLl~SGIG 578 (868)
+.+|++++.+++|+++..+ ++++++|.+..++.+.+++|+ -||.|.|+- |. +-...||.
T Consensus 120 ~~~~v~i~~~~~v~~~~~~--~~~v~~v~~~~~~g~~~i~a~-~vI~AdG~~-S~-vr~~~gi~ 178 (407)
T PRK06185 120 AYPNFTLRMGAEVTGLIEE--GGRVTGVRARTPDGPGEIRAD-LVVGADGRH-SR-VRALAGLE 178 (407)
T ss_pred hCCCcEEEeCCEEEEEEEe--CCEEEEEEEEcCCCcEEEEeC-EEEECCCCc-hH-HHHHcCCC
Confidence 4468999999999999887 567888887654444678885 788888865 32 33444543
No 198
>PRK13369 glycerol-3-phosphate dehydrogenase; Provisional
Probab=95.15 E-value=0.12 Score=60.85 Aligned_cols=33 Identities=15% Similarity=0.034 Sum_probs=30.0
Q ss_pred CCccccCCCcchhhhhhhhhcccccchhhhhhhhhhc
Q psy1205 329 MPAVTSGSAPLGGIQALRITRQDLVRWDQHLILALSC 365 (868)
Q Consensus 329 ~p~~~~g~~~~g~~~a~~~~~~g~~~~~~~~~~~~~~ 365 (868)
|..+++|.|.+|+.+|+.|+..|+ ++.++|+.+
T Consensus 7 ~DVvIIGGGi~G~~~A~~la~rG~----~V~LlEk~d 39 (502)
T PRK13369 7 YDLFVIGGGINGAGIARDAAGRGL----KVLLCEKDD 39 (502)
T ss_pred cCEEEECCCHHHHHHHHHHHhCCC----cEEEEECCC
Confidence 567899999999999999999998 688888887
No 199
>PRK07846 mycothione reductase; Reviewed
Probab=95.12 E-value=0.012 Score=68.20 Aligned_cols=41 Identities=22% Similarity=0.514 Sum_probs=33.5
Q ss_pred cceEEEECCCchhhhHHhhhhccCcccccccCCCCCcc-ccchhhH
Q psy1205 61 DYDFIVIGGGSSGAVVANRLSEMNTCNCPVTQPGPTLA-STCGGSA 105 (868)
Q Consensus 61 ~~d~~~~g~~~~~~~~a~~~~~~~~~~~LvlE~G~~LG-s~iN~~~ 105 (868)
+||+||||+|++|-.+|.+.. +.||+|+|++. +| +|+|-+.
T Consensus 1 ~yD~vVIG~G~~g~~aa~~~~---G~~V~lie~~~-~GGtC~n~GC 42 (451)
T PRK07846 1 HYDLIIIGTGSGNSILDERFA---DKRIAIVEKGT-FGGTCLNVGC 42 (451)
T ss_pred CCCEEEECCCHHHHHHHHHHC---CCeEEEEeCCC-CCCcccCcCc
Confidence 499999999999998887742 78999999965 55 8887543
No 200
>TIGR00275 flavoprotein, HI0933 family. The model when searched with a partial length search brings in proteins with a dinucleotide-binding motif (Rossman fold) over the initial 40 residues of the model, including oxidoreductases and dehydrogenases. Partially characterized members include an FAD-binding protein from Bacillus cereus and flavoprotein HI0933 from Haemophilus influenzae.
Probab=95.12 E-value=0.012 Score=66.96 Aligned_cols=55 Identities=27% Similarity=0.433 Sum_probs=37.9
Q ss_pred hhhhhccCCCCeEEEccceEeEEEEcCCCCeEEEEEEEECCeEEEEEeccEEEEccCCcCchH
Q psy1205 508 AFLRPIISRNNLHILLNTTVTRVIVDPLTKAAIGVEFLTNGRLERLQAKNEVIVCAGAVDSPR 570 (868)
Q Consensus 508 ~~L~~~~~~~nl~I~~~~~V~rIl~d~~~~~a~GV~~~~~g~~~~v~A~k~VILAAGai~SP~ 570 (868)
..|....++.+++|++++.|++|..+ ++ ...|+. +++ ++.++ .||+|+|+...|+
T Consensus 109 ~~L~~~l~~~gv~i~~~~~V~~i~~~--~~-~~~v~~--~~~--~i~ad-~VIlAtG~~s~p~ 163 (400)
T TIGR00275 109 DALLNELKELGVEILTNSKVKSIKKD--DN-GFGVET--SGG--EYEAD-KVILATGGLSYPQ 163 (400)
T ss_pred HHHHHHHHHCCCEEEeCCEEEEEEec--CC-eEEEEE--CCc--EEEcC-EEEECCCCcccCC
Confidence 34444455678999999999999664 33 234443 333 46775 7999999987775
No 201
>PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=95.12 E-value=0.012 Score=66.41 Aligned_cols=33 Identities=15% Similarity=0.296 Sum_probs=30.6
Q ss_pred ceEEEECCCchhhhHHhhhhccCcccccccCCCC
Q psy1205 62 YDFIVIGGGSSGAVVANRLSEMNTCNCPVTQPGP 95 (868)
Q Consensus 62 ~d~~~~g~~~~~~~~a~~~~~~~~~~~LvlE~G~ 95 (868)
+|+||||||++|+++|..|+.. +++|+|+|+.+
T Consensus 2 ~dV~IvGgG~~Gl~~A~~L~~~-G~~v~l~E~~~ 34 (374)
T PRK06617 2 SNTVILGCGLSGMLTALSFAQK-GIKTTIFESKS 34 (374)
T ss_pred ccEEEECCCHHHHHHHHHHHcC-CCeEEEecCCC
Confidence 7999999999999999999886 79999999875
No 202
>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype.
Probab=95.06 E-value=0.012 Score=66.53 Aligned_cols=34 Identities=26% Similarity=0.487 Sum_probs=30.6
Q ss_pred eEEEECCCchhhhHHhhhhccCcccccccCCCCC
Q psy1205 63 DFIVIGGGSSGAVVANRLSEMNTCNCPVTQPGPT 96 (868)
Q Consensus 63 d~~~~g~~~~~~~~a~~~~~~~~~~~LvlE~G~~ 96 (868)
|+||||||.+|+++|..|++..+++|+|+||...
T Consensus 1 dv~IvGaG~aGl~~A~~L~~~G~~~v~v~E~~~~ 34 (382)
T TIGR01984 1 DVIIVGGGLVGLSLALALSRLGKIKIALIEANSP 34 (382)
T ss_pred CEEEECccHHHHHHHHHHhcCCCceEEEEeCCCc
Confidence 7999999999999999999873299999999874
No 203
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=95.05 E-value=0.012 Score=63.93 Aligned_cols=57 Identities=25% Similarity=0.367 Sum_probs=42.5
Q ss_pred CCCCeEEEccceEeEEEEcCCCCeEEEEEEEE--CCeEEEEEeccEEEEccCCcCchHHHHhc
Q psy1205 515 SRNNLHILLNTTVTRVIVDPLTKAAIGVEFLT--NGRLERLQAKNEVIVCAGAVDSPRILLLS 575 (868)
Q Consensus 515 ~~~nl~I~~~~~V~rIl~d~~~~~a~GV~~~~--~g~~~~v~A~k~VILAAGai~SP~LLl~S 575 (868)
++.|+++++++.++++.-+ +++.+|++.+ .++..++.++ .||+|+|....+.+|..+
T Consensus 188 ~~~gv~~~~~~~v~~i~~~---~~~~~v~~~~~~~g~~~~i~~D-~vi~a~G~~~~~~~l~~~ 246 (300)
T TIGR01292 188 KNPNIEFLWNSTVKEIVGD---NKVEGVKIKNTVTGEEEELKVD-GVFIAIGHEPNTELLKGL 246 (300)
T ss_pred hCCCeEEEeccEEEEEEcc---CcEEEEEEEecCCCceEEEEcc-EEEEeeCCCCChHHHHHh
Confidence 3348999999999999754 3677777654 4666788886 899999977666666544
No 204
>PF01946 Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K.
Probab=95.03 E-value=0.08 Score=53.66 Aligned_cols=52 Identities=29% Similarity=0.264 Sum_probs=36.3
Q ss_pred hhhccCCCCeEEEccceEeEEEEcCCCCeEEEEEEEE-----CC---eEEEEEeccEEEEccC
Q psy1205 510 LRPIISRNNLHILLNTTVTRVIVDPLTKAAIGVEFLT-----NG---RLERLQAKNEVIVCAG 564 (868)
Q Consensus 510 L~~~~~~~nl~I~~~~~V~rIl~d~~~~~a~GV~~~~-----~g---~~~~v~A~k~VILAAG 564 (868)
+..+.+ .|++|+..+.|+.+.+.+ ++|+.||.+.- .+ ...+|+|+ .||=|+|
T Consensus 103 ~s~a~~-aGakifn~~~vEDvi~r~-~~rV~GvViNWt~V~~~glHvDPl~i~ak-~ViDaTG 162 (230)
T PF01946_consen 103 ASKAID-AGAKIFNLTSVEDVIVRE-DDRVAGVVINWTPVEMAGLHVDPLTIRAK-VVIDATG 162 (230)
T ss_dssp HHHHHT-TTEEEEETEEEEEEEEEC-SCEEEEEEEEEHHHHTT--T-B-EEEEES-EEEE---
T ss_pred HHHHhc-CCCEEEeeeeeeeeEEEc-CCeEEEEEEEehHHhHhhcCCCcceEEEe-EEEeCCC
Confidence 334444 899999999999999984 38999998753 22 24789995 6777776
No 205
>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=94.98 E-value=0.013 Score=66.56 Aligned_cols=34 Identities=29% Similarity=0.473 Sum_probs=30.6
Q ss_pred cceEEEECCCchhhhHHhhhhcc--CcccccccCCC
Q psy1205 61 DYDFIVIGGGSSGAVVANRLSEM--NTCNCPVTQPG 94 (868)
Q Consensus 61 ~~d~~~~g~~~~~~~~a~~~~~~--~~~~~LvlE~G 94 (868)
.||+||||||.+|+++|..|+.. .+++|+||||-
T Consensus 3 ~~dv~IvGaG~aGl~~A~~L~~~~~~G~~v~v~E~~ 38 (395)
T PRK05732 3 RMDVIIVGGGMAGATLALALSRLSHGGLPVALIEAF 38 (395)
T ss_pred cCCEEEECcCHHHHHHHHHhhhcccCCCEEEEEeCC
Confidence 58999999999999999999874 37899999984
No 206
>PRK08244 hypothetical protein; Provisional
Probab=94.90 E-value=0.014 Score=68.53 Aligned_cols=35 Identities=29% Similarity=0.478 Sum_probs=32.3
Q ss_pred cceEEEECCCchhhhHHhhhhccCcccccccCCCCC
Q psy1205 61 DYDFIVIGGGSSGAVVANRLSEMNTCNCPVTQPGPT 96 (868)
Q Consensus 61 ~~d~~~~g~~~~~~~~a~~~~~~~~~~~LvlE~G~~ 96 (868)
+||++|||||++|+++|..|+.. +++|+||||.+.
T Consensus 2 ~~dVlIVGaGpaGl~lA~~L~~~-G~~v~viEr~~~ 36 (493)
T PRK08244 2 KYEVIIIGGGPVGLMLASELALA-GVKTCVIERLKE 36 (493)
T ss_pred CCCEEEECCCHHHHHHHHHHHHC-CCcEEEEecCCC
Confidence 48999999999999999999975 799999999876
No 207
>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein. This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.
Probab=94.86 E-value=0.015 Score=67.95 Aligned_cols=44 Identities=27% Similarity=0.428 Sum_probs=36.6
Q ss_pred cceEEEECCCchhhhHHhhhhccCcccccccCCC-----C---Ccc-ccchhhH
Q psy1205 61 DYDFIVIGGGSSGAVVANRLSEMNTCNCPVTQPG-----P---TLA-STCGGSA 105 (868)
Q Consensus 61 ~~d~~~~g~~~~~~~~a~~~~~~~~~~~LvlE~G-----~---~LG-s~iN~~~ 105 (868)
+||+||||+|++|..+|.++++. +.+|+|||++ + .+| +|+|-+.
T Consensus 2 ~yDvvVIG~G~aG~~aA~~aa~~-G~~v~lie~~~~~~~~~~~~~GGtc~n~GC 54 (484)
T TIGR01438 2 DYDLIVIGGGSGGLAAAKEAADY-GAKVMLLDFVTPTPLGTRWGIGGTCVNVGC 54 (484)
T ss_pred ccCEEEECCCHHHHHHHHHHHHC-CCeEEEEeccCCCCCCcceeccccccccCc
Confidence 59999999999999999999986 7899999974 1 266 7777443
No 208
>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated
Probab=94.86 E-value=0.014 Score=66.55 Aligned_cols=33 Identities=30% Similarity=0.434 Sum_probs=30.5
Q ss_pred cceEEEECCCchhhhHHhhhhccCcccccccCCC
Q psy1205 61 DYDFIVIGGGSSGAVVANRLSEMNTCNCPVTQPG 94 (868)
Q Consensus 61 ~~d~~~~g~~~~~~~~a~~~~~~~~~~~LvlE~G 94 (868)
.||++|||||.+|+++|..|+.. +++|.|||+-
T Consensus 4 ~~dV~IvGaG~~Gl~~A~~L~~~-G~~v~viE~~ 36 (405)
T PRK08850 4 SVDVAIIGGGMVGLALAAALKES-DLRIAVIEGQ 36 (405)
T ss_pred cCCEEEECccHHHHHHHHHHHhC-CCEEEEEcCC
Confidence 58999999999999999999875 7999999985
No 209
>TIGR01813 flavo_cyto_c flavocytochrome c. This model describes a family of redox proteins related to the succinate dehydrogenases and fumarate reductases of E. coli, mitochondria, and other well-characterized systems. A member of this family from Shewanella frigidimarina NCIMB400 is characterized as a water-soluble periplasmic protein with four heme groups, a non-covalently bound FAD, and essentially unidirectional fumarate reductase activity. At least seven distinct members of this family are found in Shewanella oneidensis, a species able to use a wide variety of pathways for respiraton.
Probab=94.85 E-value=0.015 Score=67.15 Aligned_cols=35 Identities=23% Similarity=0.380 Sum_probs=32.2
Q ss_pred eEEEECCCchhhhHHhhhhccCc-ccccccCCCCCcc
Q psy1205 63 DFIVIGGGSSGAVVANRLSEMNT-CNCPVTQPGPTLA 98 (868)
Q Consensus 63 d~~~~g~~~~~~~~a~~~~~~~~-~~~LvlE~G~~LG 98 (868)
|+||||+|.+|+.+|.++++. + .+|+|||+++..|
T Consensus 1 DVvVVG~G~AGl~AA~~aa~~-G~~~V~vlEk~~~~g 36 (439)
T TIGR01813 1 DVVVVGSGFAGLSAALSAKKA-GAANVVLLEKMPVIG 36 (439)
T ss_pred CEEEECCCHHHHHHHHHHHHc-CCccEEEEecCCCCC
Confidence 899999999999999999986 6 8999999998765
No 210
>PRK07190 hypothetical protein; Provisional
Probab=94.81 E-value=0.017 Score=67.44 Aligned_cols=36 Identities=19% Similarity=0.220 Sum_probs=32.3
Q ss_pred CcceEEEECCCchhhhHHhhhhccCcccccccCCCCC
Q psy1205 60 RDYDFIVIGGGSSGAVVANRLSEMNTCNCPVTQPGPT 96 (868)
Q Consensus 60 ~~~d~~~~g~~~~~~~~a~~~~~~~~~~~LvlE~G~~ 96 (868)
..||+||||+|++|+++|..|+.. +++|+|||+.+.
T Consensus 4 ~~~dVlIVGAGPaGL~lA~~Lar~-Gi~V~llEr~~~ 39 (487)
T PRK07190 4 QVTDVVIIGAGPVGLMCAYLGQLC-GLNTVIVDKSDG 39 (487)
T ss_pred ccceEEEECCCHHHHHHHHHHHHc-CCCEEEEeCCCc
Confidence 358999999999999999999875 789999999875
No 211
>PRK11259 solA N-methyltryptophan oxidase; Provisional
Probab=94.79 E-value=0.14 Score=57.72 Aligned_cols=32 Identities=19% Similarity=0.253 Sum_probs=26.7
Q ss_pred CccccCCCcchhhhhhhhhcccccchhhhhhhhhhc
Q psy1205 330 PAVTSGSAPLGGIQALRITRQDLVRWDQHLILALSC 365 (868)
Q Consensus 330 p~~~~g~~~~g~~~a~~~~~~g~~~~~~~~~~~~~~ 365 (868)
-.+++|.|.+|+.+|+.|++.|. ++.++|+..
T Consensus 5 dv~IIGgGi~G~s~A~~L~~~g~----~V~lie~~~ 36 (376)
T PRK11259 5 DVIVIGLGSMGSAAGYYLARRGL----RVLGLDRFM 36 (376)
T ss_pred cEEEECCCHHHHHHHHHHHHCCC----eEEEEeccc
Confidence 34789999999999999999996 577777664
No 212
>PRK06834 hypothetical protein; Provisional
Probab=94.78 E-value=0.017 Score=67.59 Aligned_cols=35 Identities=20% Similarity=0.509 Sum_probs=32.2
Q ss_pred cceEEEECCCchhhhHHhhhhccCcccccccCCCCC
Q psy1205 61 DYDFIVIGGGSSGAVVANRLSEMNTCNCPVTQPGPT 96 (868)
Q Consensus 61 ~~d~~~~g~~~~~~~~a~~~~~~~~~~~LvlE~G~~ 96 (868)
.||+||||||++|+++|..|+.. +++|+|||+-..
T Consensus 3 ~~dVlIVGaGp~Gl~lA~~La~~-G~~v~vlEr~~~ 37 (488)
T PRK06834 3 EHAVVIAGGGPTGLMLAGELALA-GVDVAIVERRPN 37 (488)
T ss_pred cceEEEECCCHHHHHHHHHHHHC-CCcEEEEecCCC
Confidence 58999999999999999999986 799999999764
No 213
>COG3380 Predicted NAD/FAD-dependent oxidoreductase [General function prediction only]
Probab=94.74 E-value=0.081 Score=54.98 Aligned_cols=65 Identities=22% Similarity=0.266 Sum_probs=41.6
Q ss_pred ccchhhhhhhhccCCCCeEEEccceEeEEEEcCCCCeEEEEEEEECCeEEEEEeccEEEEccCCcCchHHHHhcCC
Q psy1205 502 RLSTSKAFLRPIISRNNLHILLNTTVTRVIVDPLTKAAIGVEFLTNGRLERLQAKNEVIVCAGAVDSPRILLLSGI 577 (868)
Q Consensus 502 R~s~~~~~L~~~~~~~nl~I~~~~~V~rIl~d~~~~~a~GV~~~~~g~~~~v~A~k~VILAAGai~SP~LLl~SGI 577 (868)
+.|+...||. .+++|+++++|++|-..+ ...-+ ..++......+ +.|||+.=+=+++.||--+-+
T Consensus 106 gmsalak~LA-----tdL~V~~~~rVt~v~~~~---~~W~l--~~~~g~~~~~~-d~vvla~PAPQ~~~LLt~~~~ 170 (331)
T COG3380 106 GMSALAKFLA-----TDLTVVLETRVTEVARTD---NDWTL--HTDDGTRHTQF-DDVVLAIPAPQTATLLTTDAD 170 (331)
T ss_pred chHHHHHHHh-----ccchhhhhhhhhhheecC---CeeEE--EecCCCccccc-ceEEEecCCCcchhhcCcccc
Confidence 3455555553 479999999999997752 22222 22222223344 479999999999998865533
No 214
>PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria. Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A.
Probab=94.70 E-value=0.013 Score=65.26 Aligned_cols=50 Identities=30% Similarity=0.448 Sum_probs=37.0
Q ss_pred CCCCeEEEccceEeEEEEcCCCCeEEEEEEEECCeEEEEEeccEEEEccCCcCchHH
Q psy1205 515 SRNNLHILLNTTVTRVIVDPLTKAAIGVEFLTNGRLERLQAKNEVIVCAGAVDSPRI 571 (868)
Q Consensus 515 ~~~nl~I~~~~~V~rIl~d~~~~~a~GV~~~~~g~~~~v~A~k~VILAAGai~SP~L 571 (868)
+.+|++|+ +..|+.|+.+ ++++.||.. .+|. .++++ .||||+|+|....+
T Consensus 107 ~~~nl~i~-~~~V~~l~~e--~~~v~GV~~-~~g~--~~~a~-~vVlaTGtfl~G~~ 156 (392)
T PF01134_consen 107 SHPNLTII-QGEVTDLIVE--NGKVKGVVT-KDGE--EIEAD-AVVLATGTFLNGCI 156 (392)
T ss_dssp TSTTEEEE-ES-EEEEEEC--TTEEEEEEE-TTSE--EEEEC-EEEE-TTTGBTSEE
T ss_pred cCCCeEEE-EcccceEEec--CCeEEEEEe-CCCC--EEecC-EEEEecccccCcee
Confidence 46899996 6799999998 789999865 3554 57785 89999999554443
No 215
>PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated
Probab=94.69 E-value=0.017 Score=65.60 Aligned_cols=35 Identities=17% Similarity=0.278 Sum_probs=31.8
Q ss_pred cceEEEECCCchhhhHHhhhhccCcccccccCCCCC
Q psy1205 61 DYDFIVIGGGSSGAVVANRLSEMNTCNCPVTQPGPT 96 (868)
Q Consensus 61 ~~d~~~~g~~~~~~~~a~~~~~~~~~~~LvlE~G~~ 96 (868)
.+|+||||||.+|+++|..|+.. +.+|+|||+.+.
T Consensus 2 ~~dV~IvGaGpaGl~~A~~L~~~-G~~v~v~E~~~~ 36 (392)
T PRK08243 2 RTQVAIIGAGPAGLLLGQLLHLA-GIDSVVLERRSR 36 (392)
T ss_pred cceEEEECCCHHHHHHHHHHHhc-CCCEEEEEcCCc
Confidence 47999999999999999999976 899999999763
No 216
>PRK08275 putative oxidoreductase; Provisional
Probab=94.68 E-value=0.016 Score=68.95 Aligned_cols=38 Identities=24% Similarity=0.388 Sum_probs=33.6
Q ss_pred CcceEEEECCCchhhhHHhhhhcc-CcccccccCCCCCc
Q psy1205 60 RDYDFIVIGGGSSGAVVANRLSEM-NTCNCPVTQPGPTL 97 (868)
Q Consensus 60 ~~~d~~~~g~~~~~~~~a~~~~~~-~~~~~LvlE~G~~L 97 (868)
.++|+||||+|.||+.+|.++++. ++.+|+|||+++..
T Consensus 8 ~~~DVlVIG~G~AGl~AAi~aa~~g~g~~VilveK~~~~ 46 (554)
T PRK08275 8 VETDILVIGGGTAGPMAAIKAKERNPALRVLLLEKANVK 46 (554)
T ss_pred EecCEEEECcCHHHHHHHHHHHHhCCCCeEEEEeCCCCC
Confidence 468999999999999999999885 46899999999864
No 217
>PRK05257 malate:quinone oxidoreductase; Validated
Probab=94.66 E-value=0.13 Score=60.06 Aligned_cols=66 Identities=21% Similarity=0.264 Sum_probs=43.8
Q ss_pred hhhhccCCCCeEEEccceEeEEEEcCCCCeEEEEEEEE--CCeEEEEEeccEEEEccCCcCchHHHHhcCCC
Q psy1205 509 FLRPIISRNNLHILLNTTVTRVIVDPLTKAAIGVEFLT--NGRLERLQAKNEVIVCAGAVDSPRILLLSGIG 578 (868)
Q Consensus 509 ~L~~~~~~~nl~I~~~~~V~rIl~d~~~~~a~GV~~~~--~g~~~~v~A~k~VILAAGai~SP~LLl~SGIG 578 (868)
+...+.+.++++|++++.|++|..+. ++++ .|...+ .|+..+++|+ .||+|||+ .+.+|+..+|+.
T Consensus 189 L~~~a~~~Ggv~i~~~teV~~I~~~~-dg~~-~v~~~~~~~G~~~~i~A~-~VVvaAGg-~s~~L~~~~Gi~ 256 (494)
T PRK05257 189 LVGYLQKQGNFELQLGHEVRDIKRND-DGSW-TVTVKDLKTGEKRTVRAK-FVFIGAGG-GALPLLQKSGIP 256 (494)
T ss_pred HHHHHHhCCCeEEEeCCEEEEEEECC-CCCE-EEEEEEcCCCceEEEEcC-EEEECCCc-chHHHHHHcCCC
Confidence 33333344459999999999998752 3332 233332 4544568885 79999998 467788888763
No 218
>PRK06854 adenylylsulfate reductase subunit alpha; Validated
Probab=94.66 E-value=0.016 Score=69.56 Aligned_cols=39 Identities=23% Similarity=0.323 Sum_probs=34.2
Q ss_pred CcceEEEECCCchhhhHHhhhhcc-CcccccccCCCCCcc
Q psy1205 60 RDYDFIVIGGGSSGAVVANRLSEM-NTCNCPVTQPGPTLA 98 (868)
Q Consensus 60 ~~~d~~~~g~~~~~~~~a~~~~~~-~~~~~LvlE~G~~LG 98 (868)
.++|+||||+|.||+.+|.++++. ++.+|+|||++...+
T Consensus 10 ~~~DVlVIG~G~AGl~AAi~Aae~~~G~~V~lieK~~~~~ 49 (608)
T PRK06854 10 VDTDILIIGGGMAGCGAAFEAKEWAPDLKVLIVEKANIKR 49 (608)
T ss_pred eEeCEEEECcCHHHHHHHHHHHHhCCCCeEEEEECCCcCC
Confidence 468999999999999999999985 478999999987643
No 219
>PRK06184 hypothetical protein; Provisional
Probab=94.63 E-value=0.019 Score=67.54 Aligned_cols=36 Identities=19% Similarity=0.414 Sum_probs=32.8
Q ss_pred cceEEEECCCchhhhHHhhhhccCcccccccCCCCCc
Q psy1205 61 DYDFIVIGGGSSGAVVANRLSEMNTCNCPVTQPGPTL 97 (868)
Q Consensus 61 ~~d~~~~g~~~~~~~~a~~~~~~~~~~~LvlE~G~~L 97 (868)
.+|+||||||++|+++|..|+.. +++|+|||+-+..
T Consensus 3 ~~dVlIVGaGpaGl~~A~~La~~-Gi~v~viE~~~~~ 38 (502)
T PRK06184 3 TTDVLIVGAGPTGLTLAIELARR-GVSFRLIEKAPEP 38 (502)
T ss_pred CCcEEEECCCHHHHHHHHHHHHC-CCcEEEEeCCCCC
Confidence 58999999999999999999986 7899999998763
No 220
>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]
Probab=94.63 E-value=0.018 Score=65.25 Aligned_cols=33 Identities=18% Similarity=0.353 Sum_probs=30.9
Q ss_pred cceEEEECCCchhhhHHhhhhccCcccccccCCC
Q psy1205 61 DYDFIVIGGGSSGAVVANRLSEMNTCNCPVTQPG 94 (868)
Q Consensus 61 ~~d~~~~g~~~~~~~~a~~~~~~~~~~~LvlE~G 94 (868)
.+|++|||||.+|+++|..|+.. +++|.|||+-
T Consensus 2 ~~dV~IvGaG~aGl~lA~~L~~~-G~~V~l~E~~ 34 (387)
T COG0654 2 MLDVAIVGAGPAGLALALALARA-GLDVTLLERA 34 (387)
T ss_pred CCCEEEECCCHHHHHHHHHHHhC-CCcEEEEccC
Confidence 47999999999999999999987 5999999996
No 221
>PLN02576 protoporphyrinogen oxidase
Probab=94.56 E-value=0.022 Score=66.90 Aligned_cols=39 Identities=28% Similarity=0.372 Sum_probs=34.6
Q ss_pred CcceEEEECCCchhhhHHhhhhccCcccccccCCCCCcc
Q psy1205 60 RDYDFIVIGGGSSGAVVANRLSEMNTCNCPVTQPGPTLA 98 (868)
Q Consensus 60 ~~~d~~~~g~~~~~~~~a~~~~~~~~~~~LvlE~G~~LG 98 (868)
..+|+||||||.+|+++|.+|++..+.+|.|||+...+|
T Consensus 11 ~~~~v~IIGaGisGL~aA~~L~~~~g~~v~vlEa~~rvG 49 (496)
T PLN02576 11 SSKDVAVVGAGVSGLAAAYALASKHGVNVLVTEARDRVG 49 (496)
T ss_pred CCCCEEEECcCHHHHHHHHHHHHhcCCCEEEEecCCCCC
Confidence 457999999999999999999874357999999999877
No 222
>PRK07843 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=94.54 E-value=0.021 Score=67.94 Aligned_cols=38 Identities=26% Similarity=0.511 Sum_probs=35.1
Q ss_pred CcceEEEECCCchhhhHHhhhhccCcccccccCCCCCcc
Q psy1205 60 RDYDFIVIGGGSSGAVVANRLSEMNTCNCPVTQPGPTLA 98 (868)
Q Consensus 60 ~~~d~~~~g~~~~~~~~a~~~~~~~~~~~LvlE~G~~LG 98 (868)
.++|++|||+|.+|+++|.++++. +.+|+|||+.+.+|
T Consensus 6 ~~~DvvVvG~G~aG~~aA~~aa~~-G~~v~llEk~~~~g 43 (557)
T PRK07843 6 QEYDVVVVGSGAAGMVAALTAAHR-GLSTVVVEKAPHYG 43 (557)
T ss_pred CcCCEEEECcCHHHHHHHHHHHHC-CCCEEEEeCCCCCC
Confidence 479999999999999999999986 78999999998876
No 223
>PRK07395 L-aspartate oxidase; Provisional
Probab=94.54 E-value=0.021 Score=67.65 Aligned_cols=40 Identities=18% Similarity=0.292 Sum_probs=34.6
Q ss_pred CCCCcceEEEECCCchhhhHHhhhhccCcccccccCCCCCcc
Q psy1205 57 FPDRDYDFIVIGGGSSGAVVANRLSEMNTCNCPVTQPGPTLA 98 (868)
Q Consensus 57 ~~~~~~d~~~~g~~~~~~~~a~~~~~~~~~~~LvlE~G~~LG 98 (868)
..+.++|+||||+|.||+.+|.++.+ +.+|+|||.+...|
T Consensus 5 ~~~~e~DVlVVG~G~AGl~AAi~A~~--G~~V~lieK~~~~g 44 (553)
T PRK07395 5 ILPSQFDVLVVGSGAAGLYAALCLPS--HLRVGLITKDTLKT 44 (553)
T ss_pred cccccCCEEEECccHHHHHHHHHhhc--CCCEEEEEccCCCC
Confidence 34568999999999999999999864 78999999998755
No 224
>PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated
Probab=94.53 E-value=0.025 Score=67.14 Aligned_cols=38 Identities=32% Similarity=0.503 Sum_probs=34.4
Q ss_pred CCcceEEEECCCchhhhHHhhhhccCcccccccCCCCCc
Q psy1205 59 DRDYDFIVIGGGSSGAVVANRLSEMNTCNCPVTQPGPTL 97 (868)
Q Consensus 59 ~~~~d~~~~g~~~~~~~~a~~~~~~~~~~~LvlE~G~~L 97 (868)
...||+||||||++|+++|..|++. +++|+||||....
T Consensus 8 ~~~~dV~IVGaGp~Gl~lA~~L~~~-G~~v~v~Er~~~~ 45 (538)
T PRK06183 8 AHDTDVVIVGAGPVGLTLANLLGQY-GVRVLVLERWPTL 45 (538)
T ss_pred cCCCCEEEECCCHHHHHHHHHHHHC-CCcEEEEecCCCC
Confidence 4579999999999999999999986 7999999999863
No 225
>TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase. Members of this family are the enzyme 4-hydroxybenzoate 3-monooxygenase, also called p-hydroxybenzoate hydroxylase. It converts 4-hydroxybenzoate + NADPH + molecular oxygen to protocatechuate + NADPH + water. It contains monooxygenase (pfam01360) and FAD binding (pfam01494) domains. Pathways that contain this enzyme include the protocatechuate 4,5-degradation pathway.
Probab=94.52 E-value=0.018 Score=65.31 Aligned_cols=34 Identities=18% Similarity=0.324 Sum_probs=31.1
Q ss_pred cceEEEECCCchhhhHHhhhhccCcccccccCCCC
Q psy1205 61 DYDFIVIGGGSSGAVVANRLSEMNTCNCPVTQPGP 95 (868)
Q Consensus 61 ~~d~~~~g~~~~~~~~a~~~~~~~~~~~LvlE~G~ 95 (868)
.+|++|||||.+|+++|..|+.. +++|+|||+-+
T Consensus 2 ~~dV~IVGaG~aGl~~A~~L~~~-G~~v~viE~~~ 35 (390)
T TIGR02360 2 KTQVAIIGAGPSGLLLGQLLHKA-GIDNVILERQS 35 (390)
T ss_pred CceEEEECccHHHHHHHHHHHHC-CCCEEEEECCC
Confidence 47999999999999999999986 79999999875
No 226
>KOG2415|consensus
Probab=94.47 E-value=0.021 Score=62.19 Aligned_cols=39 Identities=21% Similarity=0.409 Sum_probs=34.7
Q ss_pred CcceEEEECCCchhhhHHhhhhc-----cCcccccccCCCCCcc
Q psy1205 60 RDYDFIVIGGGSSGAVVANRLSE-----MNTCNCPVTQPGPTLA 98 (868)
Q Consensus 60 ~~~d~~~~g~~~~~~~~a~~~~~-----~~~~~~LvlE~G~~LG 98 (868)
++||++|||||+||+.+|-||.+ +...+|-|+|.+..+|
T Consensus 75 e~~Dv~IVG~GPAGLsaAIrlKQla~~~~~dlrVcvvEKaa~~G 118 (621)
T KOG2415|consen 75 EEVDVVIVGAGPAGLSAAIRLKQLAAKANKDLRVCVVEKAAEVG 118 (621)
T ss_pred ccccEEEECCCchhHHHHHHHHHHHHhcCCceEEEEEeeccccC
Confidence 57999999999999999999976 3457999999998877
No 227
>PRK05945 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=94.46 E-value=0.019 Score=68.66 Aligned_cols=38 Identities=18% Similarity=0.429 Sum_probs=33.5
Q ss_pred cceEEEECCCchhhhHHhhhhcc-CcccccccCCCCCcc
Q psy1205 61 DYDFIVIGGGSSGAVVANRLSEM-NTCNCPVTQPGPTLA 98 (868)
Q Consensus 61 ~~d~~~~g~~~~~~~~a~~~~~~-~~~~~LvlE~G~~LG 98 (868)
++|+||||+|.||+.+|.++++. ++.+|+|||++...|
T Consensus 3 ~~DVlVIG~G~AGl~AAi~aa~~g~g~~V~vleK~~~~g 41 (575)
T PRK05945 3 EHDVVIVGGGLAGCRAALEIKRLDPSLDVAVVAKTHPIR 41 (575)
T ss_pred cccEEEECccHHHHHHHHHHHHhcCCCcEEEEeccCCCc
Confidence 58999999999999999999985 358999999997655
No 228
>PRK12834 putative FAD-binding dehydrogenase; Reviewed
Probab=94.44 E-value=0.022 Score=67.80 Aligned_cols=38 Identities=29% Similarity=0.404 Sum_probs=34.1
Q ss_pred CcceEEEECCCchhhhHHhhhhccCcccccccCCCC--Ccc
Q psy1205 60 RDYDFIVIGGGSSGAVVANRLSEMNTCNCPVTQPGP--TLA 98 (868)
Q Consensus 60 ~~~d~~~~g~~~~~~~~a~~~~~~~~~~~LvlE~G~--~LG 98 (868)
.++|+||||+|.||+++|..+++. +.+|+|||+++ .+|
T Consensus 3 ~~~DVvVVG~G~AGl~AAl~Aa~~-G~~VivlEK~~~~~~G 42 (549)
T PRK12834 3 MDADVIVVGAGLAGLVAAAELADA-GKRVLLLDQENEANLG 42 (549)
T ss_pred ccCCEEEECcCHHHHHHHHHHHHC-CCeEEEEeCCCCCCCC
Confidence 368999999999999999999986 68999999999 566
No 229
>TIGR00562 proto_IX_ox protoporphyrinogen oxidase. This protein is a flavoprotein and has a beta-alpha-beta dinucleotide binding motif near the amino end.
Probab=94.41 E-value=0.023 Score=66.11 Aligned_cols=37 Identities=22% Similarity=0.355 Sum_probs=33.6
Q ss_pred ceEEEECCCchhhhHHhhhhccC---cccccccCCCCCcc
Q psy1205 62 YDFIVIGGGSSGAVVANRLSEMN---TCNCPVTQPGPTLA 98 (868)
Q Consensus 62 ~d~~~~g~~~~~~~~a~~~~~~~---~~~~LvlE~G~~LG 98 (868)
.|+||||||.+|+++|.+|++.. +.+|+|+|+...+|
T Consensus 3 ~~v~VIGaGiaGL~aA~~L~~~~~~~g~~v~vlE~~~r~G 42 (462)
T TIGR00562 3 KHVVIIGGGISGLCAAYYLEKEIPELPVELTLVEASDRVG 42 (462)
T ss_pred ceEEEECCCHHHHHHHHHHHhcCCCCCCcEEEEEcCCcCc
Confidence 68999999999999999999852 68999999998877
No 230
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=94.39 E-value=0.019 Score=58.55 Aligned_cols=61 Identities=30% Similarity=0.439 Sum_probs=35.2
Q ss_pred hhhhccCCCCeEEEccceEeEEEEcCCCCeEEEEEEEECCeEEEEEeccEEEEccCCcCchHHHHhcC
Q psy1205 509 FLRPIISRNNLHILLNTTVTRVIVDPLTKAAIGVEFLTNGRLERLQAKNEVIVCAGAVDSPRILLLSG 576 (868)
Q Consensus 509 ~L~~~~~~~nl~I~~~~~V~rIl~d~~~~~a~GV~~~~~g~~~~v~A~k~VILAAGai~SP~LLl~SG 576 (868)
||....++.+++|+++++|+++..+. ++ .-|++ +++ .+++|+ .||||+|.+..|+++..-|
T Consensus 87 yl~~~~~~~~l~i~~~~~V~~v~~~~--~~-w~v~~-~~~--~~~~a~-~VVlAtG~~~~p~~p~~~g 147 (203)
T PF13738_consen 87 YLQEYAERFGLEIRFNTRVESVRRDG--DG-WTVTT-RDG--RTIRAD-RVVLATGHYSHPRIPDIPG 147 (203)
T ss_dssp HHHHHHHHTTGGEETS--EEEEEEET--TT-EEEEE-TTS---EEEEE-EEEE---SSCSB---S-TT
T ss_pred HHHHHHhhcCcccccCCEEEEEEEec--cE-EEEEE-Eec--ceeeee-eEEEeeeccCCCCcccccc
Confidence 45555555677799999999999983 33 33433 244 567785 7999999999999887654
No 231
>PRK07588 hypothetical protein; Provisional
Probab=94.39 E-value=0.022 Score=64.62 Aligned_cols=33 Identities=18% Similarity=0.322 Sum_probs=30.4
Q ss_pred eEEEECCCchhhhHHhhhhccCcccccccCCCCC
Q psy1205 63 DFIVIGGGSSGAVVANRLSEMNTCNCPVTQPGPT 96 (868)
Q Consensus 63 d~~~~g~~~~~~~~a~~~~~~~~~~~LvlE~G~~ 96 (868)
|+||||||.+|+.+|..|++. +++|+|+|+.+.
T Consensus 2 ~V~IVGgG~aGl~~A~~L~~~-G~~v~v~E~~~~ 34 (391)
T PRK07588 2 KVAISGAGIAGPTLAYWLRRY-GHEPTLIERAPE 34 (391)
T ss_pred eEEEECccHHHHHHHHHHHHC-CCceEEEeCCCC
Confidence 799999999999999999986 789999999764
No 232
>PRK06175 L-aspartate oxidase; Provisional
Probab=94.38 E-value=0.021 Score=65.79 Aligned_cols=37 Identities=19% Similarity=0.246 Sum_probs=31.8
Q ss_pred CcceEEEECCCchhhhHHhhhhccCcccccccCCCCCcc
Q psy1205 60 RDYDFIVIGGGSSGAVVANRLSEMNTCNCPVTQPGPTLA 98 (868)
Q Consensus 60 ~~~d~~~~g~~~~~~~~a~~~~~~~~~~~LvlE~G~~LG 98 (868)
.++|+||||+|.||+.+|-++.+ +.+|+|||++...|
T Consensus 3 ~~~DVvVVG~G~AGl~AA~~a~~--G~~V~lleK~~~~g 39 (433)
T PRK06175 3 LYADVLIVGSGVAGLYSALNLRK--DLKILMVSKGKLNE 39 (433)
T ss_pred ccccEEEECchHHHHHHHHHhcc--CCCEEEEecCCCCC
Confidence 36899999999999999999753 78999999987643
No 233
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=94.37 E-value=0.022 Score=67.84 Aligned_cols=36 Identities=22% Similarity=0.426 Sum_probs=32.1
Q ss_pred cceEEEECCCchhhhHHhhhhccCcccccccCCCCCcc
Q psy1205 61 DYDFIVIGGGSSGAVVANRLSEMNTCNCPVTQPGPTLA 98 (868)
Q Consensus 61 ~~d~~~~g~~~~~~~~a~~~~~~~~~~~LvlE~G~~LG 98 (868)
.||+||||||+||+.+|..|+.. +.+|+|||++. +|
T Consensus 4 ~yDVvIIGgGpAGL~AA~~lar~-g~~V~liE~~~-~G 39 (555)
T TIGR03143 4 IYDLIIIGGGPAGLSAGIYAGRA-KLDTLIIEKDD-FG 39 (555)
T ss_pred cCcEEEECCCHHHHHHHHHHHHC-CCCEEEEecCC-CC
Confidence 59999999999999999999874 78999999974 55
No 234
>COG3573 Predicted oxidoreductase [General function prediction only]
Probab=94.32 E-value=0.068 Score=56.74 Aligned_cols=66 Identities=20% Similarity=0.180 Sum_probs=48.9
Q ss_pred hhhhhhccCCCCeEEEccceEeEEEEcCCCCeEEEEEEE--E-----CC--------eEEEEEeccEEEEccCCcCchHH
Q psy1205 507 KAFLRPIISRNNLHILLNTTVTRVIVDPLTKAAIGVEFL--T-----NG--------RLERLQAKNEVIVCAGAVDSPRI 571 (868)
Q Consensus 507 ~~~L~~~~~~~nl~I~~~~~V~rIl~d~~~~~a~GV~~~--~-----~g--------~~~~v~A~k~VILAAGai~SP~L 571 (868)
..-+..+.+++.+++...++|.+|... +++++||.-. . .| ..+.+.|. .||++.|+|+--+=
T Consensus 156 vr~~re~~~~~~v~f~~RHrV~~l~~t--~grvtGv~GdVLeps~v~RG~~SSR~~~GdFef~A~-aviv~SGGIGGnhe 232 (552)
T COG3573 156 VRRLREAQRRGRVTFRFRHRVDGLTTT--GGRVTGVRGDVLEPSDVERGQPSSREVVGDFEFSAS-AVIVASGGIGGNHE 232 (552)
T ss_pred HHHHHHHHhCCceEEEeeeeccceEee--CCeEeeecccccCCCccccCCCccceeecceEEeee-eEEEecCCcCCCHH
Confidence 334555666888999999999999987 8899998632 1 11 13677885 89999999987666
Q ss_pred HHhc
Q psy1205 572 LLLS 575 (868)
Q Consensus 572 Ll~S 575 (868)
|.+-
T Consensus 233 lVRr 236 (552)
T COG3573 233 LVRR 236 (552)
T ss_pred HHHh
Confidence 6654
No 235
>PRK11883 protoporphyrinogen oxidase; Reviewed
Probab=94.30 E-value=0.025 Score=65.49 Aligned_cols=36 Identities=25% Similarity=0.441 Sum_probs=32.2
Q ss_pred eEEEECCCchhhhHHhhhhcc-CcccccccCCCCCcc
Q psy1205 63 DFIVIGGGSSGAVVANRLSEM-NTCNCPVTQPGPTLA 98 (868)
Q Consensus 63 d~~~~g~~~~~~~~a~~~~~~-~~~~~LvlE~G~~LG 98 (868)
++||||||.||+++|.+|++. ++.+|+|||+...+|
T Consensus 2 ~v~IVGaGiaGL~aA~~L~~~G~~~~V~vlEa~~~~G 38 (451)
T PRK11883 2 KVAIIGGGITGLSAAYRLHKKGPDADITLLEASDRLG 38 (451)
T ss_pred eEEEECCCHHHHHHHHHHHHhCCCCCEEEEEcCCCCc
Confidence 589999999999999999986 248999999988877
No 236
>PRK07804 L-aspartate oxidase; Provisional
Probab=94.30 E-value=0.022 Score=67.47 Aligned_cols=39 Identities=18% Similarity=0.176 Sum_probs=34.7
Q ss_pred CCcceEEEECCCchhhhHHhhhhccCcccccccCCCCCcc
Q psy1205 59 DRDYDFIVIGGGSSGAVVANRLSEMNTCNCPVTQPGPTLA 98 (868)
Q Consensus 59 ~~~~d~~~~g~~~~~~~~a~~~~~~~~~~~LvlE~G~~LG 98 (868)
+.++|+||||+|.||+.+|.++++. +.+|+|||++...+
T Consensus 14 ~~~~DVlVIG~G~AGl~AAi~aae~-G~~VilleK~~~~~ 52 (541)
T PRK07804 14 RDAADVVVVGSGVAGLTAALAARRA-GRRVLVVTKAALDD 52 (541)
T ss_pred ccccCEEEECccHHHHHHHHHHHHc-CCeEEEEEccCCCC
Confidence 3579999999999999999999986 68999999998754
No 237
>PRK06753 hypothetical protein; Provisional
Probab=94.29 E-value=0.024 Score=63.82 Aligned_cols=33 Identities=24% Similarity=0.344 Sum_probs=30.7
Q ss_pred eEEEECCCchhhhHHhhhhccCcccccccCCCCC
Q psy1205 63 DFIVIGGGSSGAVVANRLSEMNTCNCPVTQPGPT 96 (868)
Q Consensus 63 d~~~~g~~~~~~~~a~~~~~~~~~~~LvlE~G~~ 96 (868)
|+||||||.+|+++|..|++. +++|.|+||.++
T Consensus 2 ~V~IvGgG~aGl~~A~~L~~~-g~~v~v~E~~~~ 34 (373)
T PRK06753 2 KIAIIGAGIGGLTAAALLQEQ-GHEVKVFEKNES 34 (373)
T ss_pred EEEEECCCHHHHHHHHHHHhC-CCcEEEEecCCc
Confidence 799999999999999999986 799999999875
No 238
>PRK06847 hypothetical protein; Provisional
Probab=94.28 E-value=0.027 Score=63.50 Aligned_cols=35 Identities=20% Similarity=0.338 Sum_probs=31.4
Q ss_pred cceEEEECCCchhhhHHhhhhccCcccccccCCCCC
Q psy1205 61 DYDFIVIGGGSSGAVVANRLSEMNTCNCPVTQPGPT 96 (868)
Q Consensus 61 ~~d~~~~g~~~~~~~~a~~~~~~~~~~~LvlE~G~~ 96 (868)
.+|+||||||.+|+++|..|++. +++|+|+|+-..
T Consensus 4 ~~~V~IVGaG~aGl~~A~~L~~~-g~~v~v~E~~~~ 38 (375)
T PRK06847 4 VKKVLIVGGGIGGLSAAIALRRA-GIAVDLVEIDPE 38 (375)
T ss_pred cceEEEECCCHHHHHHHHHHHhC-CCCEEEEecCCC
Confidence 47999999999999999999985 789999998764
No 239
>TIGR02733 desat_CrtD C-3',4' desaturase CrtD. Members of this family are slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. strain PCC 6803, and close homologs (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyzes the first step that is committed to myxoxanthophyll.
Probab=94.28 E-value=0.026 Score=66.29 Aligned_cols=60 Identities=17% Similarity=0.121 Sum_probs=43.0
Q ss_pred hhhccCCCCeEEEccceEeEEEEcCCCCeEEEEEEEEC--CeEEEEEeccEEEEccCCcCchHHH
Q psy1205 510 LRPIISRNNLHILLNTTVTRVIVDPLTKAAIGVEFLTN--GRLERLQAKNEVIVCAGAVDSPRIL 572 (868)
Q Consensus 510 L~~~~~~~nl~I~~~~~V~rIl~d~~~~~a~GV~~~~~--g~~~~v~A~k~VILAAGai~SP~LL 572 (868)
|....++.|.+|++++.|++|+.+ +++++||...++ ++...+.|+ .||+++-.-.+.+||
T Consensus 238 L~~~~~~~G~~i~~~~~V~~I~~~--~~~~~gv~~~~~~~~~~~~~~ad-~VI~~~~~~~~~~ll 299 (492)
T TIGR02733 238 LVEALKRDGGNLLTGQRVTAIHTK--GGRAGWVVVVDSRKQEDLNVKAD-DVVANLPPQSLLELL 299 (492)
T ss_pred HHHHHHhcCCEEeCCceEEEEEEe--CCeEEEEEEecCCCCceEEEECC-EEEECCCHHHHHHhc
Confidence 333344578999999999999987 567888876543 223467886 699888876555543
No 240
>TIGR02352 thiamin_ThiO glycine oxidase ThiO. This family consists of the homotetrameric, FAD-dependent glycine oxidase ThiO, from species such as Bacillus subtilis that use glycine in thiamine biosynthesis. In general, members of this family will not be found in species such as E. coli that instead use tyrosine and the ThiH protein.
Probab=94.27 E-value=0.15 Score=56.38 Aligned_cols=48 Identities=21% Similarity=0.358 Sum_probs=36.2
Q ss_pred hccCCCCeEEEccceEeEEEEcCCCCeEEEEEEEECCeEEEEEeccEEEEccCCc
Q psy1205 512 PIISRNNLHILLNTTVTRVIVDPLTKAAIGVEFLTNGRLERLQAKNEVIVCAGAV 566 (868)
Q Consensus 512 ~~~~~~nl~I~~~~~V~rIl~d~~~~~a~GV~~~~~g~~~~v~A~k~VILAAGai 566 (868)
......|++++.++.|+.|..+ ++++++|.. .+| +++|+ .||+|+|+.
T Consensus 145 ~~~~~~g~~~~~~~~v~~i~~~--~~~~~~v~~-~~g---~~~a~-~vV~a~G~~ 192 (337)
T TIGR02352 145 KALEKLGVEIIEHTEVQHIEIR--GEKVTAIVT-PSG---DVQAD-QVVLAAGAW 192 (337)
T ss_pred HHHHHcCCEEEccceEEEEEee--CCEEEEEEc-CCC---EEECC-EEEEcCChh
Confidence 3445678999999999999876 567777752 233 57886 799999974
No 241
>PRK12843 putative FAD-binding dehydrogenase; Reviewed
Probab=94.27 E-value=0.043 Score=65.65 Aligned_cols=39 Identities=23% Similarity=0.335 Sum_probs=35.0
Q ss_pred CCcceEEEECCCchhhhHHhhhhccCcccccccCCCCCcc
Q psy1205 59 DRDYDFIVIGGGSSGAVVANRLSEMNTCNCPVTQPGPTLA 98 (868)
Q Consensus 59 ~~~~d~~~~g~~~~~~~~a~~~~~~~~~~~LvlE~G~~LG 98 (868)
+.++|+||||+|.+|+.+|..+++. +.+|+|||+...+|
T Consensus 14 ~~~~dvvvvG~G~aG~~aa~~~~~~-g~~v~l~ek~~~~g 52 (578)
T PRK12843 14 DAEFDVIVIGAGAAGMSAALFAAIA-GLKVLLVERTEYVG 52 (578)
T ss_pred CCCCCEEEECcCHHHHHHHHHHHHC-CCcEEEEecCCCCC
Confidence 4579999999999999999999976 78999999988776
No 242
>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]
Probab=94.19 E-value=0.095 Score=60.42 Aligned_cols=40 Identities=20% Similarity=0.300 Sum_probs=33.5
Q ss_pred CCcceEEEECCCchhhhHHhhhhccCcccccccCCCCCcc
Q psy1205 59 DRDYDFIVIGGGSSGAVVANRLSEMNTCNCPVTQPGPTLA 98 (868)
Q Consensus 59 ~~~~d~~~~g~~~~~~~~a~~~~~~~~~~~LvlE~G~~LG 98 (868)
.+.+|++|||||.+|..+|.+|++...-+++++|+..+.|
T Consensus 6 ~~~~~v~IIGaG~sGlaaa~~L~~~g~~~~~i~Ek~~~~G 45 (443)
T COG2072 6 ATHTDVAIIGAGQSGLAAAYALKQAGVPDFVIFEKRDDVG 45 (443)
T ss_pred CCcccEEEECCCHHHHHHHHHHHHcCCCcEEEEEccCCcC
Confidence 3578999999999999999999986322399999998744
No 243
>COG1231 Monoamine oxidase [Amino acid transport and metabolism]
Probab=94.14 E-value=0.034 Score=62.10 Aligned_cols=48 Identities=19% Similarity=0.388 Sum_probs=39.9
Q ss_pred CCcceEEEECCCchhhhHHhhhhccCcccccccCCCCCcc----ccchhhHHH
Q psy1205 59 DRDYDFIVIGGGSSGAVVANRLSEMNTCNCPVTQPGPTLA----STCGGSAYM 107 (868)
Q Consensus 59 ~~~~d~~~~g~~~~~~~~a~~~~~~~~~~~LvlE~G~~LG----s~iN~~~y~ 107 (868)
....|+||||+|.+||+.|.-|+.. +++|+|||+-+..| +..++.-|+
T Consensus 5 ~~~~~viivGaGlaGL~AA~eL~ka-G~~v~ilEar~r~GGR~~t~r~~~~~~ 56 (450)
T COG1231 5 PKTADVIIVGAGLAGLSAAYELKKA-GYQVQILEARDRVGGRSLTARAGGEYT 56 (450)
T ss_pred CCCCcEEEECCchHHHHHHHHHhhc-CcEEEEEeccCCcCceeEEEeccceee
Confidence 5668999999999999999999986 79999999998866 555555444
No 244
>PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated
Probab=94.13 E-value=0.025 Score=64.42 Aligned_cols=60 Identities=18% Similarity=0.133 Sum_probs=45.6
Q ss_pred hhhhccCCCCeEEEccceEeEEEEcCCCCeEEEEEEEECCeEEEEEeccEEEEccCCcCchHHH
Q psy1205 509 FLRPIISRNNLHILLNTTVTRVIVDPLTKAAIGVEFLTNGRLERLQAKNEVIVCAGAVDSPRIL 572 (868)
Q Consensus 509 ~L~~~~~~~nl~I~~~~~V~rIl~d~~~~~a~GV~~~~~g~~~~v~A~k~VILAAGai~SP~LL 572 (868)
.|....++.+++|+++++|+++..+ ++++.+|. ..+++...+.|+ .||||+|.+.+.-|.
T Consensus 264 aL~~~l~~~Gv~I~~g~~V~~v~~~--~~~V~~v~-~~~g~~~~i~AD-~VVLAtGrf~s~GL~ 323 (422)
T PRK05329 264 ALRRAFERLGGRIMPGDEVLGAEFE--GGRVTAVW-TRNHGDIPLRAR-HFVLATGSFFSGGLV 323 (422)
T ss_pred HHHHHHHhCCCEEEeCCEEEEEEEe--CCEEEEEE-eeCCceEEEECC-EEEEeCCCcccCcee
Confidence 3445556678999999999999876 45666655 456777788996 799999998766553
No 245
>PRK07236 hypothetical protein; Provisional
Probab=94.07 E-value=0.031 Score=63.34 Aligned_cols=36 Identities=28% Similarity=0.324 Sum_probs=32.3
Q ss_pred CcceEEEECCCchhhhHHhhhhccCcccccccCCCCC
Q psy1205 60 RDYDFIVIGGGSSGAVVANRLSEMNTCNCPVTQPGPT 96 (868)
Q Consensus 60 ~~~d~~~~g~~~~~~~~a~~~~~~~~~~~LvlE~G~~ 96 (868)
..+|+||||||.+|+++|.-|++. +++|+|+|+.+.
T Consensus 5 ~~~~ViIVGaG~aGl~~A~~L~~~-G~~v~v~E~~~~ 40 (386)
T PRK07236 5 SGPRAVVIGGSLGGLFAALLLRRA-GWDVDVFERSPT 40 (386)
T ss_pred CCCeEEEECCCHHHHHHHHHHHhC-CCCEEEEecCCC
Confidence 358999999999999999999986 799999999763
No 246
>KOG0029|consensus
Probab=94.00 E-value=0.032 Score=64.85 Aligned_cols=39 Identities=23% Similarity=0.391 Sum_probs=35.2
Q ss_pred CCcceEEEECCCchhhhHHhhhhccCcccccccCCCCCcc
Q psy1205 59 DRDYDFIVIGGGSSGAVVANRLSEMNTCNCPVTQPGPTLA 98 (868)
Q Consensus 59 ~~~~d~~~~g~~~~~~~~a~~~~~~~~~~~LvlE~G~~LG 98 (868)
.+.+++||||+|.||..+|..|.+. +.+|+||||-..+|
T Consensus 13 ~~~~~VIVIGAGiaGLsAArqL~~~-G~~V~VLEARdRvG 51 (501)
T KOG0029|consen 13 GKKKKVIVIGAGLAGLSAARQLQDF-GFDVLVLEARDRVG 51 (501)
T ss_pred cCCCcEEEECCcHHHHHHHHHHHHc-CCceEEEeccCCcC
Confidence 3578999999999999999999986 78999999998876
No 247
>PRK07208 hypothetical protein; Provisional
Probab=93.98 E-value=0.032 Score=65.23 Aligned_cols=37 Identities=22% Similarity=0.401 Sum_probs=33.8
Q ss_pred cceEEEECCCchhhhHHhhhhccCcccccccCCCCCcc
Q psy1205 61 DYDFIVIGGGSSGAVVANRLSEMNTCNCPVTQPGPTLA 98 (868)
Q Consensus 61 ~~d~~~~g~~~~~~~~a~~~~~~~~~~~LvlE~G~~LG 98 (868)
.+|+||||||.+|+++|.+|++. +.+|+|||+...+|
T Consensus 4 ~~~vvIiGaGisGL~aA~~L~~~-g~~v~v~E~~~~~G 40 (479)
T PRK07208 4 KKSVVIIGAGPAGLTAAYELLKR-GYPVTVLEADPVVG 40 (479)
T ss_pred CCcEEEECcCHHHHHHHHHHHHC-CCcEEEEecCCCCC
Confidence 46999999999999999999986 78999999988876
No 248
>PRK12839 hypothetical protein; Provisional
Probab=93.97 E-value=0.044 Score=65.27 Aligned_cols=64 Identities=16% Similarity=0.090 Sum_probs=46.0
Q ss_pred CcccccccccccCCCCCCCccCCCCcEeccCCcEEec---cCCCCC--CCCccchHHHHHHHHHHHHHHHHHhc
Q psy1205 792 AENHQAGSCKMGPASDPSAVVSPELKVHGVDRLRVVD---CSIMPA--VTSGNTNAPAIMIAEKASDLIKQQWI 860 (868)
Q Consensus 792 t~~H~~GTcrMG~~~dp~~VVD~~lrV~Gv~nL~V~D---aSv~P~--~~~~NP~~Ti~alAeraAd~I~~~~~ 860 (868)
..+|-+|+.+.- .+ .-|+|.++++ ++|||.+. ++++-. ..+++.....+..+..|++++.+.-+
T Consensus 501 ~~~~T~GGl~in--~~-~qVLd~dg~p--IpGLYAAG~~~gg~~g~~Y~~~G~~lg~a~~fGriAg~~aA~~~~ 569 (572)
T PRK12839 501 GSFGTFAGLVAD--GK-SRVLRDDDTP--IDGLYAAGNDQASVMGGHYPSGGINLGPAMTFGYIAGRELAGSTG 569 (572)
T ss_pred cccccCCCccCC--CC-ceEECCCCCC--cCCceeccccccccccCCCCCcccchhHHHHHHHHHHHHHHhccc
Confidence 456667777653 11 2688888886 69999998 355532 13578889999999999999976543
No 249
>PRK09077 L-aspartate oxidase; Provisional
Probab=93.96 E-value=0.034 Score=65.90 Aligned_cols=38 Identities=32% Similarity=0.552 Sum_probs=33.6
Q ss_pred CCcceEEEECCCchhhhHHhhhhccCcccccccCCCCCcc
Q psy1205 59 DRDYDFIVIGGGSSGAVVANRLSEMNTCNCPVTQPGPTLA 98 (868)
Q Consensus 59 ~~~~d~~~~g~~~~~~~~a~~~~~~~~~~~LvlE~G~~LG 98 (868)
+.++|+||||+|.||+.+|.++++. .+|+|||++...|
T Consensus 6 ~~~~DVlVVG~G~AGl~AA~~aa~~--~~VilveK~~~~~ 43 (536)
T PRK09077 6 EHQCDVLIIGSGAAGLSLALRLAEH--RRVAVLSKGPLSE 43 (536)
T ss_pred cccCCEEEECchHHHHHHHHHHHHC--CCEEEEeccCCCC
Confidence 4578999999999999999999884 7999999998655
No 250
>PLN02268 probable polyamine oxidase
Probab=93.94 E-value=0.032 Score=64.39 Aligned_cols=35 Identities=26% Similarity=0.483 Sum_probs=32.4
Q ss_pred eEEEECCCchhhhHHhhhhccCcccccccCCCCCcc
Q psy1205 63 DFIVIGGGSSGAVVANRLSEMNTCNCPVTQPGPTLA 98 (868)
Q Consensus 63 d~~~~g~~~~~~~~a~~~~~~~~~~~LvlE~G~~LG 98 (868)
++||||+|.+|+.+|.+|.+. +.+|+|||+...+|
T Consensus 2 ~VvVIGaGisGL~aA~~L~~~-g~~v~vlEa~~r~G 36 (435)
T PLN02268 2 SVIVIGGGIAGIAAARALHDA-SFKVTLLESRDRIG 36 (435)
T ss_pred CEEEECCCHHHHHHHHHHHhC-CCeEEEEeCCCCCC
Confidence 689999999999999999874 78999999999887
No 251
>PTZ00139 Succinate dehydrogenase [ubiquinone] flavoprotein subunit; Provisional
Probab=93.92 E-value=0.029 Score=67.45 Aligned_cols=38 Identities=24% Similarity=0.308 Sum_probs=33.9
Q ss_pred CcceEEEECCCchhhhHHhhhhccCcccccccCCCCCcc
Q psy1205 60 RDYDFIVIGGGSSGAVVANRLSEMNTCNCPVTQPGPTLA 98 (868)
Q Consensus 60 ~~~d~~~~g~~~~~~~~a~~~~~~~~~~~LvlE~G~~LG 98 (868)
.++|+||||+|.||+.+|-++++. +.+|+|||.+...+
T Consensus 28 ~~~DVlVIG~G~AGl~AAi~Aa~~-G~~V~lveK~~~~~ 65 (617)
T PTZ00139 28 HTYDAVVVGAGGAGLRAALGLVEL-GYKTACISKLFPTR 65 (617)
T ss_pred cccCEEEECccHHHHHHHHHHHHc-CCcEEEEeccCCCC
Confidence 468999999999999999999875 68999999987655
No 252
>PRK06134 putative FAD-binding dehydrogenase; Reviewed
Probab=93.83 E-value=0.053 Score=64.91 Aligned_cols=40 Identities=28% Similarity=0.436 Sum_probs=35.7
Q ss_pred CCCcceEEEECCCchhhhHHhhhhccCcccccccCCCCCcc
Q psy1205 58 PDRDYDFIVIGGGSSGAVVANRLSEMNTCNCPVTQPGPTLA 98 (868)
Q Consensus 58 ~~~~~d~~~~g~~~~~~~~a~~~~~~~~~~~LvlE~G~~LG 98 (868)
.+.++|+||||+|.+|+.+|..+.+. +.+|+|||+...+|
T Consensus 9 ~~~~~dvvvvG~G~aG~~aa~~~~~~-g~~v~~iek~~~~g 48 (581)
T PRK06134 9 PDLECDVLVIGSGAAGLSAAVTAAWH-GLKVIVVEKDPVFG 48 (581)
T ss_pred CCCccCEEEECcCHHHHHHHHHHHHC-CCeEEEEecCCCCC
Confidence 45689999999999999999999986 78999999987766
No 253
>PRK12266 glpD glycerol-3-phosphate dehydrogenase; Reviewed
Probab=93.78 E-value=0.53 Score=55.43 Aligned_cols=33 Identities=15% Similarity=0.043 Sum_probs=29.3
Q ss_pred CCccccCCCcchhhhhhhhhcccccchhhhhhhhhhc
Q psy1205 329 MPAVTSGSAPLGGIQALRITRQDLVRWDQHLILALSC 365 (868)
Q Consensus 329 ~p~~~~g~~~~g~~~a~~~~~~g~~~~~~~~~~~~~~ 365 (868)
|-.+++|.|.+|+.+|+.|++.|+ ++.++|+.+
T Consensus 7 ~DVvIIGGGi~G~~~A~~la~rGl----~V~LvEk~d 39 (508)
T PRK12266 7 YDLLVIGGGINGAGIARDAAGRGL----SVLLCEQDD 39 (508)
T ss_pred CCEEEECcCHHHHHHHHHHHHCCC----eEEEEecCC
Confidence 446789999999999999999998 688888877
No 254
>PRK08958 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=93.78 E-value=0.036 Score=66.34 Aligned_cols=38 Identities=26% Similarity=0.450 Sum_probs=34.0
Q ss_pred CcceEEEECCCchhhhHHhhhhccCcccccccCCCCCcc
Q psy1205 60 RDYDFIVIGGGSSGAVVANRLSEMNTCNCPVTQPGPTLA 98 (868)
Q Consensus 60 ~~~d~~~~g~~~~~~~~a~~~~~~~~~~~LvlE~G~~LG 98 (868)
.++|+||||+|.||+..|-++++. +.+|+|||.+...+
T Consensus 6 ~~~DVlVVG~G~AGl~AAi~Aa~~-G~~V~lleK~~~~~ 43 (588)
T PRK08958 6 REFDAVVIGAGGAGMRAALQISQS-GQSCALLSKVFPTR 43 (588)
T ss_pred cccCEEEECccHHHHHHHHHHHHc-CCcEEEEEccCCCC
Confidence 468999999999999999999885 78999999997655
No 255
>PRK08205 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=93.76 E-value=0.032 Score=66.77 Aligned_cols=37 Identities=19% Similarity=0.283 Sum_probs=32.6
Q ss_pred CcceEEEECCCchhhhHHhhhhccCcccccccCCCCCcc
Q psy1205 60 RDYDFIVIGGGSSGAVVANRLSEMNTCNCPVTQPGPTLA 98 (868)
Q Consensus 60 ~~~d~~~~g~~~~~~~~a~~~~~~~~~~~LvlE~G~~LG 98 (868)
.++|+||||+|.||+.+|.++++. .+|+|||++...+
T Consensus 4 ~~~DVlVIG~G~AGl~AAl~aa~~--~~VilleK~~~~~ 40 (583)
T PRK08205 4 HRYDVVIVGAGGAGMRAAIEAGPR--ARTAVLTKLYPTR 40 (583)
T ss_pred eeccEEEECccHHHHHHHHHHHhC--CCEEEEeCCCCCC
Confidence 368999999999999999999974 7999999987644
No 256
>PRK08163 salicylate hydroxylase; Provisional
Probab=93.76 E-value=0.036 Score=62.95 Aligned_cols=35 Identities=17% Similarity=0.303 Sum_probs=31.7
Q ss_pred cceEEEECCCchhhhHHhhhhccCcccccccCCCCC
Q psy1205 61 DYDFIVIGGGSSGAVVANRLSEMNTCNCPVTQPGPT 96 (868)
Q Consensus 61 ~~d~~~~g~~~~~~~~a~~~~~~~~~~~LvlE~G~~ 96 (868)
..|+||||||.+|+++|..|+.. +++|+|+||.+.
T Consensus 4 ~~~V~IvGaGiaGl~~A~~L~~~-g~~v~v~Er~~~ 38 (396)
T PRK08163 4 VTPVLIVGGGIGGLAAALALARQ-GIKVKLLEQAAE 38 (396)
T ss_pred CCeEEEECCcHHHHHHHHHHHhC-CCcEEEEeeCcc
Confidence 47999999999999999999985 789999999764
No 257
>PRK06126 hypothetical protein; Provisional
Probab=93.75 E-value=0.038 Score=65.73 Aligned_cols=36 Identities=17% Similarity=0.335 Sum_probs=32.7
Q ss_pred CcceEEEECCCchhhhHHhhhhccCcccccccCCCCC
Q psy1205 60 RDYDFIVIGGGSSGAVVANRLSEMNTCNCPVTQPGPT 96 (868)
Q Consensus 60 ~~~d~~~~g~~~~~~~~a~~~~~~~~~~~LvlE~G~~ 96 (868)
.++|++|||||.+|+++|..|+.. +++|+||||-+.
T Consensus 6 ~~~~VlIVGaGpaGL~~Al~La~~-G~~v~viEr~~~ 41 (545)
T PRK06126 6 SETPVLIVGGGPVGLALALDLGRR-GVDSILVERKDG 41 (545)
T ss_pred ccCCEEEECCCHHHHHHHHHHHHC-CCcEEEEeCCCC
Confidence 468999999999999999999986 799999998764
No 258
>PRK09231 fumarate reductase flavoprotein subunit; Validated
Probab=93.74 E-value=0.036 Score=66.23 Aligned_cols=38 Identities=18% Similarity=0.239 Sum_probs=33.8
Q ss_pred cceEEEECCCchhhhHHhhhhcc-CcccccccCCCCCcc
Q psy1205 61 DYDFIVIGGGSSGAVVANRLSEM-NTCNCPVTQPGPTLA 98 (868)
Q Consensus 61 ~~d~~~~g~~~~~~~~a~~~~~~-~~~~~LvlE~G~~LG 98 (868)
++|+||||+|.||+.+|-++++. ++.+|+|||++...+
T Consensus 4 ~~DVlVVG~G~AGl~AAi~Aa~~g~g~~V~lleK~~~~~ 42 (582)
T PRK09231 4 QADLAIIGAGGAGLRAAIAAAEANPNLKIALISKVYPMR 42 (582)
T ss_pred eeeEEEECccHHHHHHHHHHHHhCCCCcEEEEEccCCCC
Confidence 58999999999999999999985 357999999997765
No 259
>PRK07538 hypothetical protein; Provisional
Probab=93.74 E-value=0.035 Score=63.59 Aligned_cols=33 Identities=24% Similarity=0.429 Sum_probs=30.3
Q ss_pred eEEEECCCchhhhHHhhhhccCcccccccCCCCC
Q psy1205 63 DFIVIGGGSSGAVVANRLSEMNTCNCPVTQPGPT 96 (868)
Q Consensus 63 d~~~~g~~~~~~~~a~~~~~~~~~~~LvlE~G~~ 96 (868)
|+||||||.+|+++|..|+.. +++|+|+||.+.
T Consensus 2 dV~IVGaG~aGl~~A~~L~~~-G~~v~v~E~~~~ 34 (413)
T PRK07538 2 KVLIAGGGIGGLTLALTLHQR-GIEVVVFEAAPE 34 (413)
T ss_pred eEEEECCCHHHHHHHHHHHhC-CCcEEEEEcCCc
Confidence 899999999999999999986 789999999764
No 260
>PRK06452 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=93.73 E-value=0.036 Score=66.11 Aligned_cols=38 Identities=26% Similarity=0.404 Sum_probs=33.4
Q ss_pred CcceEEEECCCchhhhHHhhhhccCcccccccCCCCCcc
Q psy1205 60 RDYDFIVIGGGSSGAVVANRLSEMNTCNCPVTQPGPTLA 98 (868)
Q Consensus 60 ~~~d~~~~g~~~~~~~~a~~~~~~~~~~~LvlE~G~~LG 98 (868)
.++|+||||+|.||+..|-++++. +.+|+|||.+...+
T Consensus 4 ~~~DVvVVG~G~AGl~AAl~Aae~-G~~V~lveK~~~~~ 41 (566)
T PRK06452 4 IEYDAVVIGGGLAGLMSAHEIASA-GFKVAVISKVFPTR 41 (566)
T ss_pred ccCcEEEECccHHHHHHHHHHHHC-CCcEEEEEccCCCC
Confidence 368999999999999999999885 78999999987644
No 261
>PRK08401 L-aspartate oxidase; Provisional
Probab=93.67 E-value=0.036 Score=64.49 Aligned_cols=34 Identities=24% Similarity=0.435 Sum_probs=31.2
Q ss_pred ceEEEECCCchhhhHHhhhhccCcccccccCCCCC
Q psy1205 62 YDFIVIGGGSSGAVVANRLSEMNTCNCPVTQPGPT 96 (868)
Q Consensus 62 ~d~~~~g~~~~~~~~a~~~~~~~~~~~LvlE~G~~ 96 (868)
+|+||||+|.||+.+|..+++. +.+|+|||++..
T Consensus 2 ~DVvVVGaG~AGl~AAi~aae~-G~~V~liek~~~ 35 (466)
T PRK08401 2 MKVGIVGGGLAGLTAAISLAKK-GFDVTIIGPGIK 35 (466)
T ss_pred CeEEEECccHHHHHHHHHHHHC-CCeEEEEeCCCC
Confidence 7999999999999999999985 689999999864
No 262
>COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]
Probab=93.67 E-value=0.042 Score=62.13 Aligned_cols=36 Identities=31% Similarity=0.499 Sum_probs=32.6
Q ss_pred CcceEEEECCCchhhhHHhhhhccCcccccccCCCCC
Q psy1205 60 RDYDFIVIGGGSSGAVVANRLSEMNTCNCPVTQPGPT 96 (868)
Q Consensus 60 ~~~d~~~~g~~~~~~~~a~~~~~~~~~~~LvlE~G~~ 96 (868)
..+|+||||||.+|+.+|..|++. +.+|+|||++..
T Consensus 3 ~~~~vvVIGgGi~Gls~A~~La~~-G~~V~vie~~~~ 38 (387)
T COG0665 3 MKMDVVIIGGGIVGLSAAYYLAER-GADVTVLEAGEA 38 (387)
T ss_pred CcceEEEECCcHHHHHHHHHHHHc-CCEEEEEecCcc
Confidence 468999999999999999999987 459999999875
No 263
>PRK08294 phenol 2-monooxygenase; Provisional
Probab=93.66 E-value=0.039 Score=66.57 Aligned_cols=37 Identities=22% Similarity=0.477 Sum_probs=33.4
Q ss_pred CcceEEEECCCchhhhHHhhhhccCcccccccCCCCC
Q psy1205 60 RDYDFIVIGGGSSGAVVANRLSEMNTCNCPVTQPGPT 96 (868)
Q Consensus 60 ~~~d~~~~g~~~~~~~~a~~~~~~~~~~~LvlE~G~~ 96 (868)
..+|+||||||++|+++|..|+..++.+|.|||+-+.
T Consensus 31 ~~~dVlIVGAGPaGL~lA~~Lar~~Gi~v~IiE~~~~ 67 (634)
T PRK08294 31 DEVDVLIVGCGPAGLTLAAQLSAFPDITTRIVERKPG 67 (634)
T ss_pred CCCCEEEECCCHHHHHHHHHHhcCCCCcEEEEEcCCC
Confidence 4799999999999999999999844799999999875
No 264
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=93.65 E-value=0.14 Score=59.36 Aligned_cols=68 Identities=22% Similarity=0.303 Sum_probs=46.2
Q ss_pred hhhhhhhccCCCCeE--EEccceEeEEEEcCCCCeEEEEEEEEC-CeEEEEEeccEEEEccCCcCchHHHHhcCC
Q psy1205 506 SKAFLRPIISRNNLH--ILLNTTVTRVIVDPLTKAAIGVEFLTN-GRLERLQAKNEVIVCAGAVDSPRILLLSGI 577 (868)
Q Consensus 506 ~~~~L~~~~~~~nl~--I~~~~~V~rIl~d~~~~~a~GV~~~~~-g~~~~v~A~k~VILAAGai~SP~LLl~SGI 577 (868)
...||...+++-++. |+.+++|++|..+ +++ .-|..... +...+..++ .||+|+|.+..|++.-.-|+
T Consensus 113 v~~YL~~~a~~fgl~~~I~~~t~V~~V~~~--~~~-w~V~~~~~~~~~~~~~~d-~VIvAtG~~~~P~~P~ipG~ 183 (461)
T PLN02172 113 VLAYLQDFAREFKIEEMVRFETEVVRVEPV--DGK-WRVQSKNSGGFSKDEIFD-AVVVCNGHYTEPNVAHIPGI 183 (461)
T ss_pred HHHHHHHHHHHcCCcceEEecCEEEEEeec--CCe-EEEEEEcCCCceEEEEcC-EEEEeccCCCCCcCCCCCCc
Confidence 456777766666776 9999999999775 332 23443332 233345564 79999999999988766554
No 265
>COG1635 THI4 Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism]
Probab=93.64 E-value=0.18 Score=51.01 Aligned_cols=31 Identities=19% Similarity=0.303 Sum_probs=27.1
Q ss_pred ccccCCCcchhhhhhhhhcccccchhhhhhhhhhc
Q psy1205 331 AVTSGSAPLGGIQALRITRQDLVRWDQHLILALSC 365 (868)
Q Consensus 331 ~~~~g~~~~g~~~a~~~~~~g~~~~~~~~~~~~~~ 365 (868)
.++.|.|.+|..+|+.||+.|+ ++.++|++-
T Consensus 33 ViIVGaGPsGLtAAyyLAk~g~----kV~i~E~~l 63 (262)
T COG1635 33 VIIVGAGPSGLTAAYYLAKAGL----KVAIFERKL 63 (262)
T ss_pred EEEECcCcchHHHHHHHHhCCc----eEEEEEeec
Confidence 3678999999999999999998 677887776
No 266
>PRK07803 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=93.59 E-value=0.035 Score=66.94 Aligned_cols=38 Identities=26% Similarity=0.290 Sum_probs=33.3
Q ss_pred CcceEEEECCCchhhhHHhhhhccCcccccccCCCCCcc
Q psy1205 60 RDYDFIVIGGGSSGAVVANRLSEMNTCNCPVTQPGPTLA 98 (868)
Q Consensus 60 ~~~d~~~~g~~~~~~~~a~~~~~~~~~~~LvlE~G~~LG 98 (868)
.++|+||||+|.||+.+|.++++. +.+|+|||++...+
T Consensus 7 ~~~DVvVIG~G~AGl~AAl~Aae~-G~~V~lieK~~~~~ 44 (626)
T PRK07803 7 HSYDVVVIGAGGAGLRAAIEARER-GLRVAVVCKSLFGK 44 (626)
T ss_pred eeecEEEECcCHHHHHHHHHHHHC-CCCEEEEeccCCCC
Confidence 468999999999999999999885 68999999987543
No 267
>PLN02815 L-aspartate oxidase
Probab=93.59 E-value=0.043 Score=65.48 Aligned_cols=39 Identities=23% Similarity=0.411 Sum_probs=34.0
Q ss_pred CCCcceEEEECCCchhhhHHhhhhccCcccccccCCCCCcc
Q psy1205 58 PDRDYDFIVIGGGSSGAVVANRLSEMNTCNCPVTQPGPTLA 98 (868)
Q Consensus 58 ~~~~~d~~~~g~~~~~~~~a~~~~~~~~~~~LvlE~G~~LG 98 (868)
...++|+||||+|.||+.+|-++++. + +|+|||.+...|
T Consensus 26 ~~~~~DVlVVG~G~AGl~AAl~Aae~-G-~VvlleK~~~~g 64 (594)
T PLN02815 26 STKYFDFLVIGSGIAGLRYALEVAEY-G-TVAIITKDEPHE 64 (594)
T ss_pred cccccCEEEECccHHHHHHHHHHhhC-C-CEEEEECCCCCC
Confidence 33579999999999999999999986 4 899999998765
No 268
>PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E ....
Probab=93.58 E-value=0.041 Score=55.81 Aligned_cols=33 Identities=27% Similarity=0.521 Sum_probs=30.0
Q ss_pred eEEEECCCchhhhHHhhhhccCcccccccCCCCC
Q psy1205 63 DFIVIGGGSSGAVVANRLSEMNTCNCPVTQPGPT 96 (868)
Q Consensus 63 d~~~~g~~~~~~~~a~~~~~~~~~~~LvlE~G~~ 96 (868)
|++|||||+||..+|.+|. .++.+|+|+|+.+.
T Consensus 1 ~vvIIGgG~aGl~aA~~l~-~~~~~v~ii~~~~~ 33 (201)
T PF07992_consen 1 DVVIIGGGPAGLSAALELA-RPGAKVLIIEKSPG 33 (201)
T ss_dssp EEEEESSSHHHHHHHHHHH-HTTSEEEEESSSSH
T ss_pred CEEEEecHHHHHHHHHHHh-cCCCeEEEEecccc
Confidence 7999999999999999999 45899999988775
No 269
>PRK08132 FAD-dependent oxidoreductase; Provisional
Probab=93.57 E-value=0.036 Score=66.02 Aligned_cols=37 Identities=22% Similarity=0.310 Sum_probs=33.8
Q ss_pred CcceEEEECCCchhhhHHhhhhccCcccccccCCCCCc
Q psy1205 60 RDYDFIVIGGGSSGAVVANRLSEMNTCNCPVTQPGPTL 97 (868)
Q Consensus 60 ~~~d~~~~g~~~~~~~~a~~~~~~~~~~~LvlE~G~~L 97 (868)
..+|+||||+|.+|+++|..|+.. +.+|+|||+-..+
T Consensus 22 ~~~dVlIVGaGpaGl~lA~~L~~~-G~~v~viE~~~~~ 58 (547)
T PRK08132 22 ARHPVVVVGAGPVGLALAIDLAQQ-GVPVVLLDDDDTL 58 (547)
T ss_pred CcCCEEEECCCHHHHHHHHHHHhC-CCcEEEEeCCCCC
Confidence 579999999999999999999975 7999999999864
No 270
>PRK06069 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=93.57 E-value=0.035 Score=66.45 Aligned_cols=38 Identities=21% Similarity=0.392 Sum_probs=33.4
Q ss_pred cceEEEECCCchhhhHHhhhhccC--cccccccCCCCCcc
Q psy1205 61 DYDFIVIGGGSSGAVVANRLSEMN--TCNCPVTQPGPTLA 98 (868)
Q Consensus 61 ~~d~~~~g~~~~~~~~a~~~~~~~--~~~~LvlE~G~~LG 98 (868)
++|+||||+|.||+.+|-++++.. +.+|+|||++...+
T Consensus 5 ~~DVlVVG~G~AGl~AA~~Aa~~G~~~~~V~lleK~~~~~ 44 (577)
T PRK06069 5 KYDVVIVGSGLAGLRAAVAAAERSGGKLSVAVVSKTQPMR 44 (577)
T ss_pred ecCEEEECccHHHHHHHHHHHHhCCCCCcEEEEEcccCCC
Confidence 589999999999999999999863 27999999988655
No 271
>PLN02676 polyamine oxidase
Probab=93.57 E-value=0.047 Score=63.77 Aligned_cols=39 Identities=23% Similarity=0.339 Sum_probs=33.8
Q ss_pred CcceEEEECCCchhhhHHhhhhccCcccccccCCCCCcc
Q psy1205 60 RDYDFIVIGGGSSGAVVANRLSEMNTCNCPVTQPGPTLA 98 (868)
Q Consensus 60 ~~~d~~~~g~~~~~~~~a~~~~~~~~~~~LvlE~G~~LG 98 (868)
..+|+||||+|.+|+.+|.+|++....+|+|||+...+|
T Consensus 25 ~~~~v~IIGaG~sGL~aa~~L~~~g~~~v~vlE~~~~~G 63 (487)
T PLN02676 25 PSPSVIIVGAGMSGISAAKTLSEAGIEDILILEATDRIG 63 (487)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHcCCCcEEEecCCCCCC
Confidence 357999999999999999999987323699999998877
No 272
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=93.56 E-value=0.053 Score=62.78 Aligned_cols=39 Identities=23% Similarity=0.273 Sum_probs=35.1
Q ss_pred CCcceEEEECCCchhhhHHhhhhccCcccccccCCCCCcc
Q psy1205 59 DRDYDFIVIGGGSSGAVVANRLSEMNTCNCPVTQPGPTLA 98 (868)
Q Consensus 59 ~~~~d~~~~g~~~~~~~~a~~~~~~~~~~~LvlE~G~~LG 98 (868)
...++++|||+|++|+++|..|.+. +.+|+|+||+..+|
T Consensus 8 ~~~~~VaIIGAG~aGL~aA~~l~~~-G~~v~vfE~~~~vG 46 (461)
T PLN02172 8 INSQHVAVIGAGAAGLVAARELRRE-GHTVVVFEREKQVG 46 (461)
T ss_pred CCCCCEEEECCcHHHHHHHHHHHhc-CCeEEEEecCCCCc
Confidence 3468999999999999999999986 68999999999877
No 273
>PRK09078 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=93.55 E-value=0.036 Score=66.50 Aligned_cols=38 Identities=18% Similarity=0.294 Sum_probs=33.6
Q ss_pred CcceEEEECCCchhhhHHhhhhccCcccccccCCCCCcc
Q psy1205 60 RDYDFIVIGGGSSGAVVANRLSEMNTCNCPVTQPGPTLA 98 (868)
Q Consensus 60 ~~~d~~~~g~~~~~~~~a~~~~~~~~~~~LvlE~G~~LG 98 (868)
.++|+||||+|.||+.+|.++++. +.+|+|||++...+
T Consensus 11 ~~~DVvVIG~G~AGl~AAl~Aa~~-G~~V~lveK~~~~~ 48 (598)
T PRK09078 11 HKYDVVVVGAGGAGLRATLGMAEA-GLKTACITKVFPTR 48 (598)
T ss_pred cccCEEEECccHHHHHHHHHHHHc-CCcEEEEEccCCCC
Confidence 468999999999999999999986 68999999987644
No 274
>KOG4716|consensus
Probab=93.48 E-value=0.046 Score=58.12 Aligned_cols=47 Identities=28% Similarity=0.460 Sum_probs=36.6
Q ss_pred CCCcceEEEECCCchhhhHHhhhhccCcccccccCCC------CC--cc-ccchhhH
Q psy1205 58 PDRDYDFIVIGGGSSGAVVANRLSEMNTCNCPVTQPG------PT--LA-STCGGSA 105 (868)
Q Consensus 58 ~~~~~d~~~~g~~~~~~~~a~~~~~~~~~~~LvlE~G------~~--LG-s~iN~~~ 105 (868)
++..||.||||||++|+..|.+-+.. +.+|.+|+.= .+ || +|+|-+-
T Consensus 16 ~sydyDLIviGgGSgGLacaKeAa~~-G~kV~~lDfV~PtP~GtsWGlGGTCvNVGC 71 (503)
T KOG4716|consen 16 SSYDYDLIVIGGGSGGLACAKEAADL-GAKVACLDFVKPTPQGTSWGLGGTCVNVGC 71 (503)
T ss_pred ccCCccEEEEcCCcchhhHHHHHHhc-CCcEEEEeecccCCCCCccccCceeeeccc
Confidence 44679999999999999999988875 7899997653 22 44 8888553
No 275
>TIGR01176 fum_red_Fp fumarate reductase, flavoprotein subunit. The terms succinate dehydrogenase and fumarate reductase may be used interchangeably in certain systems. However, a number of species have distinct complexes, with the fumarate reductase active under anaerobic conditions. This model represents the fumarate reductase flavoprotein subunit from several such species in which a distinct succinate dehydrogenase is also found. Not all bona fide fumarate reductases will be found by this model.
Probab=93.47 E-value=0.04 Score=65.74 Aligned_cols=38 Identities=21% Similarity=0.247 Sum_probs=33.8
Q ss_pred cceEEEECCCchhhhHHhhhhcc-CcccccccCCCCCcc
Q psy1205 61 DYDFIVIGGGSSGAVVANRLSEM-NTCNCPVTQPGPTLA 98 (868)
Q Consensus 61 ~~d~~~~g~~~~~~~~a~~~~~~-~~~~~LvlE~G~~LG 98 (868)
++|+||||+|.||+.+|-.+++. ++.+|+|||++..++
T Consensus 3 ~~DVlVIG~G~AGl~AAl~aa~~g~g~~V~lveK~~~~~ 41 (580)
T TIGR01176 3 QHDIAVIGAGGAGLRAAIAAAEANPHLDVALISKVYPMR 41 (580)
T ss_pred ceeEEEECccHHHHHHHHHHHHhCCCCcEEEEEccCCCC
Confidence 58999999999999999999885 358999999998766
No 276
>COG3573 Predicted oxidoreductase [General function prediction only]
Probab=93.44 E-value=0.048 Score=57.87 Aligned_cols=36 Identities=25% Similarity=0.337 Sum_probs=32.8
Q ss_pred CcceEEEECCCchhhhHHhhhhccCcccccccCCCCC
Q psy1205 60 RDYDFIVIGGGSSGAVVANRLSEMNTCNCPVTQPGPT 96 (868)
Q Consensus 60 ~~~d~~~~g~~~~~~~~a~~~~~~~~~~~LvlE~G~~ 96 (868)
..+|+||||+|.||+|.|..|++. +.+|++||.-+.
T Consensus 4 ~~~dvivvgaglaglvaa~elA~a-G~~V~ildQEge 39 (552)
T COG3573 4 LTADVIVVGAGLAGLVAAAELADA-GKRVLILDQEGE 39 (552)
T ss_pred ccccEEEECccHHHHHHHHHHHhc-CceEEEEccccc
Confidence 468999999999999999999986 789999998876
No 277
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=93.35 E-value=0.045 Score=63.59 Aligned_cols=41 Identities=22% Similarity=0.300 Sum_probs=35.1
Q ss_pred eEEEECCCchhhhHHhhhhccCcccccccCCCCCccccchhh
Q psy1205 63 DFIVIGGGSSGAVVANRLSEMNTCNCPVTQPGPTLASTCGGS 104 (868)
Q Consensus 63 d~~~~g~~~~~~~~a~~~~~~~~~~~LvlE~G~~LGs~iN~~ 104 (868)
++||||+|+||..+|.++++. +.+|+|||++..-|+|+|-+
T Consensus 2 ~vvVIG~G~aG~~aA~~~~~~-g~~V~lie~~~~GG~c~n~g 42 (458)
T PRK06912 2 KLVVIGGGPAGYVAAITAAQN-GKNVTLIDEADLGGTCLNEG 42 (458)
T ss_pred eEEEECCCHHHHHHHHHHHhC-CCcEEEEECCcccccCCCCc
Confidence 589999999999999999985 78999999986434888764
No 278
>PRK07057 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=93.34 E-value=0.042 Score=65.85 Aligned_cols=38 Identities=21% Similarity=0.357 Sum_probs=33.3
Q ss_pred CcceEEEECCCchhhhHHhhhhccCcccccccCCCCCcc
Q psy1205 60 RDYDFIVIGGGSSGAVVANRLSEMNTCNCPVTQPGPTLA 98 (868)
Q Consensus 60 ~~~d~~~~g~~~~~~~~a~~~~~~~~~~~LvlE~G~~LG 98 (868)
.++|+||||+|.||+.+|-++++. +.+|+|||.+...+
T Consensus 11 ~~~DVlVIG~G~AGl~AAi~Aa~~-G~~V~vleK~~~~~ 48 (591)
T PRK07057 11 RKFDVVIVGAGGSGMRASLQLARA-GLSVAVLSKVFPTR 48 (591)
T ss_pred ccCCEEEECccHHHHHHHHHHHHC-CCcEEEEeccCCCC
Confidence 468999999999999999999885 68999999986543
No 279
>PRK10157 putative oxidoreductase FixC; Provisional
Probab=93.18 E-value=0.13 Score=59.20 Aligned_cols=53 Identities=23% Similarity=0.396 Sum_probs=38.4
Q ss_pred hhhhhhhccCCCCeEEEccceEeEEEEcCCCCeEEEEEEEECCeEEEEEeccEEEEccCC
Q psy1205 506 SKAFLRPIISRNNLHILLNTTVTRVIVDPLTKAAIGVEFLTNGRLERLQAKNEVIVCAGA 565 (868)
Q Consensus 506 ~~~~L~~~~~~~nl~I~~~~~V~rIl~d~~~~~a~GV~~~~~g~~~~v~A~k~VILAAGa 565 (868)
...+|....++.+++|+.+++|++|+.+ ++++++|. .++. +++|+ .||+|.|+
T Consensus 110 fD~~L~~~a~~~Gv~i~~~~~V~~i~~~--~g~v~~v~--~~g~--~i~A~-~VI~A~G~ 162 (428)
T PRK10157 110 FDAWLMEQAEEAGAQLITGIRVDNLVQR--DGKVVGVE--ADGD--VIEAK-TVILADGV 162 (428)
T ss_pred HHHHHHHHHHHCCCEEECCCEEEEEEEe--CCEEEEEE--cCCc--EEECC-EEEEEeCC
Confidence 3445655556679999999999999876 45666653 3443 57885 79999987
No 280
>PRK06263 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=93.15 E-value=0.044 Score=65.13 Aligned_cols=35 Identities=29% Similarity=0.317 Sum_probs=31.0
Q ss_pred CcceEEEECCCchhhhHHhhhhccCcccccccCCCCC
Q psy1205 60 RDYDFIVIGGGSSGAVVANRLSEMNTCNCPVTQPGPT 96 (868)
Q Consensus 60 ~~~d~~~~g~~~~~~~~a~~~~~~~~~~~LvlE~G~~ 96 (868)
.++|+||||+|.||+.+|.++ +. +.+|+|||.+..
T Consensus 6 ~~~DVlVVG~G~AGl~AAi~A-~~-G~~VilleK~~~ 40 (543)
T PRK06263 6 MITDVLIIGSGGAGARAAIEA-ER-GKNVVIVSKGLF 40 (543)
T ss_pred eccCEEEECccHHHHHHHHHH-hc-CCCEEEEEccCC
Confidence 468999999999999999999 54 789999999864
No 281
>PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria. Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A.
Probab=93.09 E-value=0.18 Score=56.32 Aligned_cols=21 Identities=24% Similarity=0.275 Sum_probs=19.1
Q ss_pred cccCCCcchhhhhhhhhcccc
Q psy1205 332 VTSGSAPLGGIQALRITRQDL 352 (868)
Q Consensus 332 ~~~g~~~~g~~~a~~~~~~g~ 352 (868)
+++|.|.+|+.+|+.+|+.|.
T Consensus 3 iVVGgG~AG~eAA~aaAr~G~ 23 (392)
T PF01134_consen 3 IVVGGGHAGCEAALAAARMGA 23 (392)
T ss_dssp EEESSSHHHHHHHHHHHHTT-
T ss_pred EEECCCHHHHHHHHHHHHCCC
Confidence 579999999999999999997
No 282
>TIGR02734 crtI_fam phytoene desaturase. Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family, part of the larger Pfam family pfam01593, which also contains amino oxidases, are CrtI itself; it is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis.
Probab=93.07 E-value=0.046 Score=64.31 Aligned_cols=58 Identities=26% Similarity=0.314 Sum_probs=42.8
Q ss_pred hhhccCCCCeEEEccceEeEEEEcCCCCeEEEEEEEECCeEEEEEeccEEEEccCCcCchHHHH
Q psy1205 510 LRPIISRNNLHILLNTTVTRVIVDPLTKAAIGVEFLTNGRLERLQAKNEVIVCAGAVDSPRILL 573 (868)
Q Consensus 510 L~~~~~~~nl~I~~~~~V~rIl~d~~~~~a~GV~~~~~g~~~~v~A~k~VILAAGai~SP~LLl 573 (868)
|....++.+.+|++++.|++|..+ ++++++|+.. +|+ ++.|+ .||+|++...+-..|+
T Consensus 225 l~~~~~~~G~~i~~~~~V~~i~~~--~~~~~~V~~~-~g~--~~~ad-~VI~a~~~~~~~~~l~ 282 (502)
T TIGR02734 225 MAKLAEDLGGELRLNAEVIRIETE--GGRATAVHLA-DGE--RLDAD-AVVSNADLHHTYRRLL 282 (502)
T ss_pred HHHHHHHCCCEEEECCeEEEEEee--CCEEEEEEEC-CCC--EEECC-EEEECCcHHHHHHHhc
Confidence 333345568999999999999987 5788888653 443 46785 6999988877777665
No 283
>PLN00128 Succinate dehydrogenase [ubiquinone] flavoprotein subunit
Probab=93.04 E-value=0.049 Score=65.65 Aligned_cols=38 Identities=29% Similarity=0.323 Sum_probs=34.0
Q ss_pred CcceEEEECCCchhhhHHhhhhccCcccccccCCCCCcc
Q psy1205 60 RDYDFIVIGGGSSGAVVANRLSEMNTCNCPVTQPGPTLA 98 (868)
Q Consensus 60 ~~~d~~~~g~~~~~~~~a~~~~~~~~~~~LvlE~G~~LG 98 (868)
.++|+||||+|.||+.+|-++++. +.+|+|||.+...+
T Consensus 49 ~~~DVlVIG~G~AGl~AAl~Aae~-G~~VilveK~~~~~ 86 (635)
T PLN00128 49 HTYDAVVVGAGGAGLRAAIGLSEH-GFNTACITKLFPTR 86 (635)
T ss_pred eecCEEEECccHHHHHHHHHHHhc-CCcEEEEEcCCCCC
Confidence 468999999999999999999885 68999999997655
No 284
>PLN02568 polyamine oxidase
Probab=93.03 E-value=0.061 Score=63.53 Aligned_cols=38 Identities=24% Similarity=0.424 Sum_probs=33.8
Q ss_pred cceEEEECCCchhhhHHhhhhccC----cccccccCCCCCcc
Q psy1205 61 DYDFIVIGGGSSGAVVANRLSEMN----TCNCPVTQPGPTLA 98 (868)
Q Consensus 61 ~~d~~~~g~~~~~~~~a~~~~~~~----~~~~LvlE~G~~LG 98 (868)
.+|+||||+|.+|+++|.+|.+.. ..+|+|||+...+|
T Consensus 5 ~~~v~iiGaG~aGl~aa~~L~~~g~~~~~~~v~v~E~~~~~G 46 (539)
T PLN02568 5 KPRIVIIGAGMAGLTAANKLYTSSAANDMFELTVVEGGDRIG 46 (539)
T ss_pred CCcEEEECCCHHHHHHHHHHHhcccccCCceEEEEeCCCCcC
Confidence 369999999999999999999753 37999999999887
No 285
>PRK08626 fumarate reductase flavoprotein subunit; Provisional
Probab=93.03 E-value=0.049 Score=65.94 Aligned_cols=37 Identities=27% Similarity=0.227 Sum_probs=33.2
Q ss_pred cceEEEECCCchhhhHHhhhhccCcccccccCCCCCcc
Q psy1205 61 DYDFIVIGGGSSGAVVANRLSEMNTCNCPVTQPGPTLA 98 (868)
Q Consensus 61 ~~d~~~~g~~~~~~~~a~~~~~~~~~~~LvlE~G~~LG 98 (868)
++|+||||+|.||+.+|-++++. +.+|+|||.++..+
T Consensus 5 ~~DVlVIG~G~AGl~AAi~Aae~-G~~VivleK~~~~~ 41 (657)
T PRK08626 5 YTDALVIGAGLAGLRVAIAAAQR-GLDTIVLSLVPAKR 41 (657)
T ss_pred eccEEEECccHHHHHHHHHHHHc-CCCEEEEeCCCCCC
Confidence 68999999999999999999985 78999999987654
No 286
>TIGR01812 sdhA_frdA_Gneg succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in Gram-negative bacteria, mitochondria, and some Archaea. Mitochondrial forms interact with ubiquinone and are designated EC 1.3.5.1, but can be degraded to 1.3.99.1. Some isozymes in E. coli and other species run primarily in the opposite direction and are designated fumarate reductase.
Probab=93.01 E-value=0.048 Score=65.16 Aligned_cols=35 Identities=20% Similarity=0.254 Sum_probs=31.4
Q ss_pred eEEEECCCchhhhHHhhhhccCcccccccCCCCCcc
Q psy1205 63 DFIVIGGGSSGAVVANRLSEMNTCNCPVTQPGPTLA 98 (868)
Q Consensus 63 d~~~~g~~~~~~~~a~~~~~~~~~~~LvlE~G~~LG 98 (868)
|+||||+|.||+.+|..+++. +.+|+|||++...+
T Consensus 1 DVlVVG~G~AGl~AA~~aae~-G~~V~lleK~~~~~ 35 (566)
T TIGR01812 1 DVVIVGAGLAGLRAAVEAAKA-GLNTAVISKVYPTR 35 (566)
T ss_pred CEEEECccHHHHHHHHHHHHC-CCcEEEEeccCCCC
Confidence 899999999999999999986 68999999987643
No 287
>PRK12416 protoporphyrinogen oxidase; Provisional
Probab=93.01 E-value=0.057 Score=62.86 Aligned_cols=36 Identities=25% Similarity=0.341 Sum_probs=32.0
Q ss_pred eEEEECCCchhhhHHhhhhcc-----CcccccccCCCCCcc
Q psy1205 63 DFIVIGGGSSGAVVANRLSEM-----NTCNCPVTQPGPTLA 98 (868)
Q Consensus 63 d~~~~g~~~~~~~~a~~~~~~-----~~~~~LvlE~G~~LG 98 (868)
++||||||.+|+++|..|++. .+.+|+|||+...+|
T Consensus 3 ~v~VIGaGisGL~aA~~L~~~~~~~~~~~~V~vlEa~~r~G 43 (463)
T PRK12416 3 TVVVIGGGITGLSTMFYLEKLKKDYNIDLNLILVEKEEYLG 43 (463)
T ss_pred eEEEECCCHHHHHHHHHHHhhhhccCCCccEEEEecCCCcc
Confidence 589999999999999999974 247999999998877
No 288
>TIGR00136 gidA glucose-inhibited division protein A. GidA, the longer of two forms of GidA-related proteins, appears to be present in all complete eubacterial genomes so far, as well as Saccharomyces cerevisiae. A subset of these organisms have a closely related protein. GidA is absent in the Archaea. It appears to act with MnmE, in an alpha2/beta2 heterotetramer, in the 5-carboxymethylaminomethyl modification of uridine 34 in certain tRNAs. The shorter, related protein, previously called gid or gidA(S), is now called TrmFO (see model TIGR00137).
Probab=92.98 E-value=0.054 Score=63.78 Aligned_cols=34 Identities=29% Similarity=0.436 Sum_probs=31.2
Q ss_pred ceEEEECCCchhhhHHhhhhccCcccccccCCCCC
Q psy1205 62 YDFIVIGGGSSGAVVANRLSEMNTCNCPVTQPGPT 96 (868)
Q Consensus 62 ~d~~~~g~~~~~~~~a~~~~~~~~~~~LvlE~G~~ 96 (868)
||+||||+|.||+.+|..++.. +.+|+|||+++.
T Consensus 1 yDViVIGaG~AGl~aA~ala~~-G~~v~Lie~~~~ 34 (617)
T TIGR00136 1 FDVIVIGGGHAGCEAALAAARM-GAKTLLLTLNLD 34 (617)
T ss_pred CeEEEECccHHHHHHHHHHHHC-CCCEEEEecccc
Confidence 7999999999999999999986 689999999865
No 289
>PRK05868 hypothetical protein; Validated
Probab=92.95 E-value=0.061 Score=60.65 Aligned_cols=33 Identities=18% Similarity=0.301 Sum_probs=30.4
Q ss_pred eEEEECCCchhhhHHhhhhccCcccccccCCCCC
Q psy1205 63 DFIVIGGGSSGAVVANRLSEMNTCNCPVTQPGPT 96 (868)
Q Consensus 63 d~~~~g~~~~~~~~a~~~~~~~~~~~LvlE~G~~ 96 (868)
|++|||||.+|+++|..|+.. +++|.|+|+-+.
T Consensus 3 ~V~IvGgG~aGl~~A~~L~~~-G~~v~viE~~~~ 35 (372)
T PRK05868 3 TVVVSGASVAGTAAAYWLGRH-GYSVTMVERHPG 35 (372)
T ss_pred eEEEECCCHHHHHHHHHHHhC-CCCEEEEcCCCC
Confidence 899999999999999999985 799999999775
No 290
>PRK08071 L-aspartate oxidase; Provisional
Probab=92.93 E-value=0.053 Score=63.80 Aligned_cols=36 Identities=25% Similarity=0.344 Sum_probs=32.4
Q ss_pred cceEEEECCCchhhhHHhhhhccCcccccccCCCCCcc
Q psy1205 61 DYDFIVIGGGSSGAVVANRLSEMNTCNCPVTQPGPTLA 98 (868)
Q Consensus 61 ~~d~~~~g~~~~~~~~a~~~~~~~~~~~LvlE~G~~LG 98 (868)
++|+||||+|.||+.+|-++++ +.+|+|||.+...+
T Consensus 3 ~~DVlVVG~G~AGl~AAl~a~~--g~~V~lveK~~~~~ 38 (510)
T PRK08071 3 SADVIIIGSGIAALTVAKELCH--EYNVIIITKKTKRN 38 (510)
T ss_pred ccCEEEECccHHHHHHHHHhhc--CCCEEEEeccCCCC
Confidence 6899999999999999999976 68999999998655
No 291
>PRK07573 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=92.92 E-value=0.054 Score=65.39 Aligned_cols=37 Identities=35% Similarity=0.472 Sum_probs=32.4
Q ss_pred CcceEEEECCCchhhhHHhhhhccCcccccccCCCCCc
Q psy1205 60 RDYDFIVIGGGSSGAVVANRLSEMNTCNCPVTQPGPTL 97 (868)
Q Consensus 60 ~~~d~~~~g~~~~~~~~a~~~~~~~~~~~LvlE~G~~L 97 (868)
.++|+||||+|.||+.+|.++++. +.+|+|||.....
T Consensus 34 ~~~DVlVVG~G~AGl~AAi~Aae~-G~~VilieK~~~~ 70 (640)
T PRK07573 34 RKFDVIVVGTGLAGASAAATLGEL-GYNVKVFCYQDSP 70 (640)
T ss_pred cccCEEEECccHHHHHHHHHHHHc-CCcEEEEecCCCC
Confidence 468999999999999999999875 7899999976554
No 292
>COG0578 GlpA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=92.90 E-value=0.066 Score=61.90 Aligned_cols=38 Identities=29% Similarity=0.480 Sum_probs=34.5
Q ss_pred CCCcceEEEECCCchhhhHHhhhhccCcccccccCCCCC
Q psy1205 58 PDRDYDFIVIGGGSSGAVVANRLSEMNTCNCPVTQPGPT 96 (868)
Q Consensus 58 ~~~~~d~~~~g~~~~~~~~a~~~~~~~~~~~LvlE~G~~ 96 (868)
...+||+||||||..|+=+|..++.. +++|+|+|++..
T Consensus 9 ~~~~~DviVIGGGitG~GiArDaA~R-Gl~v~LvE~~D~ 46 (532)
T COG0578 9 RMEEFDVIVIGGGITGAGIARDAAGR-GLKVALVEKGDL 46 (532)
T ss_pred cccCCCEEEECCchhhHHHHHHHHhC-CCeEEEEecCcc
Confidence 33789999999999999999999976 899999999974
No 293
>PRK07233 hypothetical protein; Provisional
Probab=92.84 E-value=0.058 Score=61.98 Aligned_cols=35 Identities=26% Similarity=0.454 Sum_probs=32.3
Q ss_pred eEEEECCCchhhhHHhhhhccCcccccccCCCCCcc
Q psy1205 63 DFIVIGGGSSGAVVANRLSEMNTCNCPVTQPGPTLA 98 (868)
Q Consensus 63 d~~~~g~~~~~~~~a~~~~~~~~~~~LvlE~G~~LG 98 (868)
++||||||.+|+++|..|++. +.+|+|||+...+|
T Consensus 1 ~vvVIGaGiaGL~aA~~L~~~-G~~v~vlE~~~~~G 35 (434)
T PRK07233 1 KIAIVGGGIAGLAAAYRLAKR-GHEVTVFEADDQLG 35 (434)
T ss_pred CEEEECCCHHHHHHHHHHHHC-CCcEEEEEeCCCCC
Confidence 479999999999999999986 68999999999887
No 294
>PTZ00306 NADH-dependent fumarate reductase; Provisional
Probab=92.82 E-value=0.069 Score=69.01 Aligned_cols=38 Identities=21% Similarity=0.288 Sum_probs=34.7
Q ss_pred CcceEEEECCCchhhhHHhhhhccCcccccccCCCCCcc
Q psy1205 60 RDYDFIVIGGGSSGAVVANRLSEMNTCNCPVTQPGPTLA 98 (868)
Q Consensus 60 ~~~d~~~~g~~~~~~~~a~~~~~~~~~~~LvlE~G~~LG 98 (868)
..+|+||||+|.||+++|.+.++. +.+|+|||+++.+|
T Consensus 408 ~~~DVvVVG~G~AGl~AAi~Aae~-Ga~VivlEK~~~~G 445 (1167)
T PTZ00306 408 LPARVIVVGGGLAGCSAAIEAASC-GAQVILLEKEAKLG 445 (1167)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHC-CCcEEEEEccCCCC
Confidence 469999999999999999999886 78999999998876
No 295
>PRK05335 tRNA (uracil-5-)-methyltransferase Gid; Reviewed
Probab=92.74 E-value=0.061 Score=60.71 Aligned_cols=34 Identities=24% Similarity=0.283 Sum_probs=30.8
Q ss_pred ceEEEECCCchhhhHHhhhhccCcccccccCCCCC
Q psy1205 62 YDFIVIGGGSSGAVVANRLSEMNTCNCPVTQPGPT 96 (868)
Q Consensus 62 ~d~~~~g~~~~~~~~a~~~~~~~~~~~LvlE~G~~ 96 (868)
-|++|||||.+||.+|..|++. +++|.|+|+.+.
T Consensus 3 ~dVvVIGGGlAGleAAlaLAr~-Gl~V~LiE~rp~ 36 (436)
T PRK05335 3 KPVNVIGAGLAGSEAAWQLAKR-GVPVELYEMRPV 36 (436)
T ss_pred CcEEEECCCHHHHHHHHHHHhC-CCcEEEEEccCc
Confidence 4899999999999999999985 799999998765
No 296
>PF06039 Mqo: Malate:quinone oxidoreductase (Mqo); InterPro: IPR006231 The membrane-associated enzyme, malate:quinone-oxidoreductase, is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in Escherichia coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase []. ; GO: 0008924 malate dehydrogenase (quinone) activity, 0006099 tricarboxylic acid cycle, 0055114 oxidation-reduction process
Probab=92.68 E-value=0.33 Score=54.69 Aligned_cols=69 Identities=25% Similarity=0.289 Sum_probs=51.1
Q ss_pred hhhhhccCCCCeEEEccceEeEEEEcCCCCeEEEEEEEECCeEEEEEeccEEEEccCCcCchHHHHhcCCC
Q psy1205 508 AFLRPIISRNNLHILLNTTVTRVIVDPLTKAAIGVEFLTNGRLERLQAKNEVIVCAGAVDSPRILLLSGIG 578 (868)
Q Consensus 508 ~~L~~~~~~~nl~I~~~~~V~rIl~d~~~~~a~GV~~~~~g~~~~v~A~k~VILAAGai~SP~LLl~SGIG 578 (868)
.++..+.+++|++|.++++|++|....++.-.+-|.-...++..+++|+ -|++.||+ ++=.||+.|||.
T Consensus 186 ~l~~~l~~~~~~~~~~~~eV~~i~r~~dg~W~v~~~~~~~~~~~~v~a~-FVfvGAGG-~aL~LLqksgi~ 254 (488)
T PF06039_consen 186 QLVEYLQKQKGFELHLNHEVTDIKRNGDGRWEVKVKDLKTGEKREVRAK-FVFVGAGG-GALPLLQKSGIP 254 (488)
T ss_pred HHHHHHHhCCCcEEEecCEeCeeEECCCCCEEEEEEecCCCCeEEEECC-EEEECCch-HhHHHHHHcCCh
Confidence 3444445667999999999999998754333333332347788899995 89999998 478899999874
No 297
>PF06039 Mqo: Malate:quinone oxidoreductase (Mqo); InterPro: IPR006231 The membrane-associated enzyme, malate:quinone-oxidoreductase, is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in Escherichia coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase []. ; GO: 0008924 malate dehydrogenase (quinone) activity, 0006099 tricarboxylic acid cycle, 0055114 oxidation-reduction process
Probab=92.60 E-value=0.066 Score=60.13 Aligned_cols=39 Identities=26% Similarity=0.439 Sum_probs=35.9
Q ss_pred CcceEEEECCCchhhhHHhhhhc-cCcccccccCCCCCcc
Q psy1205 60 RDYDFIVIGGGSSGAVVANRLSE-MNTCNCPVTQPGPTLA 98 (868)
Q Consensus 60 ~~~d~~~~g~~~~~~~~a~~~~~-~~~~~~LvlE~G~~LG 98 (868)
..||+++||||..|++++.-|++ +|.++|.|+||-...+
T Consensus 2 ~~~DVvLIGgGImsaTL~~~L~~l~p~~~I~i~Erl~~~A 41 (488)
T PF06039_consen 2 KEYDVVLIGGGIMSATLGYLLKELEPDWSIAIFERLDSVA 41 (488)
T ss_pred CceeEEEECchHHHHHHHHHHHHhCCCCeEEEEEecCcch
Confidence 46999999999999999999998 7899999999998754
No 298
>PRK05192 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated
Probab=92.57 E-value=0.14 Score=60.57 Aligned_cols=48 Identities=25% Similarity=0.414 Sum_probs=36.7
Q ss_pred cCCCCeEEEccceEeEEEEcCCCCeEEEEEEEECCeEEEEEeccEEEEccCCcCc
Q psy1205 514 ISRNNLHILLNTTVTRVIVDPLTKAAIGVEFLTNGRLERLQAKNEVIVCAGAVDS 568 (868)
Q Consensus 514 ~~~~nl~I~~~~~V~rIl~d~~~~~a~GV~~~~~g~~~~v~A~k~VILAAGai~S 568 (868)
.+.+|++|+ ++.|++|+.+ ++++.||... +| ..+.|+ .||+|+|++-.
T Consensus 111 ~~~~nV~I~-q~~V~~Li~e--~grV~GV~t~-dG--~~I~Ak-~VIlATGTFL~ 158 (618)
T PRK05192 111 ENQPNLDLF-QGEVEDLIVE--NGRVVGVVTQ-DG--LEFRAK-AVVLTTGTFLR 158 (618)
T ss_pred HcCCCcEEE-EeEEEEEEec--CCEEEEEEEC-CC--CEEECC-EEEEeeCcchh
Confidence 356799985 6789999887 6789998764 34 368885 89999998643
No 299
>PF04820 Trp_halogenase: Tryptophan halogenase; InterPro: IPR006905 Tryptophan halogenase catalyses the chlorination of tryptophan to form 7-chlorotryptophan. This is the first step in the biosynthesis of pyrrolnitrin, an antibiotic with broad-spectrum anti-fungal activity. Tryptophan halogenase is NADH-dependent [].; PDB: 2PYX_B 2OAL_B 2E4G_A 2OAM_A 2OA1_B 2O9Z_A 3I3L_A 2AQJ_A 2ARD_A 2JKC_A ....
Probab=92.50 E-value=0.056 Score=62.51 Aligned_cols=53 Identities=23% Similarity=0.314 Sum_probs=34.7
Q ss_pred hhhhhhhccCCCCeEEEccceEeEEEEcCCCCeEEEEEEEECCeEEEEEeccEEEEccC
Q psy1205 506 SKAFLRPIISRNNLHILLNTTVTRVIVDPLTKAAIGVEFLTNGRLERLQAKNEVIVCAG 564 (868)
Q Consensus 506 ~~~~L~~~~~~~nl~I~~~~~V~rIl~d~~~~~a~GV~~~~~g~~~~v~A~k~VILAAG 564 (868)
...+|...+.+.|++++.+ +|+++.+++ ++.+.+|+.. +| .++.|+ -||=|+|
T Consensus 156 fd~~L~~~A~~~Gv~~~~g-~V~~v~~~~-~g~i~~v~~~-~g--~~i~ad-~~IDASG 208 (454)
T PF04820_consen 156 FDQFLRRHAEERGVEVIEG-TVVDVELDE-DGRITAVRLD-DG--RTIEAD-FFIDASG 208 (454)
T ss_dssp HHHHHHHHHHHTT-EEEET--EEEEEE-T-TSEEEEEEET-TS--EEEEES-EEEE-SG
T ss_pred HHHHHHHHHhcCCCEEEeC-EEEEEEEcC-CCCEEEEEEC-CC--CEEEEe-EEEECCC
Confidence 4456666656669999887 588888875 6788888653 34 367885 6777777
No 300
>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=92.46 E-value=0.077 Score=57.76 Aligned_cols=60 Identities=22% Similarity=0.328 Sum_probs=46.4
Q ss_pred hccCCCCeEEEccceEeEEEEcCCCCeEEEEEEEEC-CeEEEEEeccEEEEccCCcCchHHHHhcC
Q psy1205 512 PIISRNNLHILLNTTVTRVIVDPLTKAAIGVEFLTN-GRLERLQAKNEVIVCAGAVDSPRILLLSG 576 (868)
Q Consensus 512 ~~~~~~nl~I~~~~~V~rIl~d~~~~~a~GV~~~~~-g~~~~v~A~k~VILAAGai~SP~LLl~SG 576 (868)
.+.+++|+.+++++.+++|.-+ + +.+|.+.+. +....+... .|+++-|..-...|+...+
T Consensus 187 ~l~~~~~i~~~~~~~i~ei~G~--~--v~~v~l~~~~~~~~~~~~~-gvf~~iG~~p~~~~~~~~~ 247 (305)
T COG0492 187 RLKKNVKIEVLTNTVVKEILGD--D--VEGVVLKNVKGEEKELPVD-GVFIAIGHLPNTELLKGLG 247 (305)
T ss_pred HHHhcCCeEEEeCCceeEEecC--c--cceEEEEecCCceEEEEec-eEEEecCCCCchHHHhhcc
Confidence 3344559999999999999765 3 778888764 667777775 7999999887777777654
No 301
>COG3380 Predicted NAD/FAD-dependent oxidoreductase [General function prediction only]
Probab=92.43 E-value=0.073 Score=55.31 Aligned_cols=35 Identities=23% Similarity=0.377 Sum_probs=31.5
Q ss_pred eEEEECCCchhhhHHhhhhccCcccccccCCCCCcc
Q psy1205 63 DFIVIGGGSSGAVVANRLSEMNTCNCPVTQPGPTLA 98 (868)
Q Consensus 63 d~~~~g~~~~~~~~a~~~~~~~~~~~LvlE~G~~LG 98 (868)
++.|||+|.+|.+.|..|++. +.+|+|+|+|.=+|
T Consensus 3 siaIVGaGiAGl~aA~~L~~a-G~~vtV~eKg~GvG 37 (331)
T COG3380 3 SIAIVGAGIAGLAAAYALREA-GREVTVFEKGRGVG 37 (331)
T ss_pred cEEEEccchHHHHHHHHHHhc-CcEEEEEEcCCCcc
Confidence 689999999999999999986 79999999997544
No 302
>TIGR00551 nadB L-aspartate oxidase. L-aspartate oxidase is the B protein, NadB, of the quinolinate synthetase complex. Quinolinate synthetase makes a precursor of the pyridine nucleotide portion of NAD. This model identifies proteins that cluster as L-aspartate oxidase (a flavoprotein difficult to separate from the set of closely related flavoprotein subunits of succinate dehydrogenase and fumarate reductase) by both UPGMA and neighbor-joining trees. The most distant protein accepted as an L-aspartate oxidase (NadB), that from Pyrococcus horikoshii, not only clusters with other NadB but is just one gene away from NadA.
Probab=92.41 E-value=0.07 Score=62.53 Aligned_cols=36 Identities=28% Similarity=0.421 Sum_probs=31.5
Q ss_pred cceEEEECCCchhhhHHhhhhccCcccccccCCCCCcc
Q psy1205 61 DYDFIVIGGGSSGAVVANRLSEMNTCNCPVTQPGPTLA 98 (868)
Q Consensus 61 ~~d~~~~g~~~~~~~~a~~~~~~~~~~~LvlE~G~~LG 98 (868)
++|+||||+|.||+.+|.++++.. . |+|||++...+
T Consensus 2 ~~DVlVVG~G~AGl~AA~~aa~~G-~-V~lleK~~~~~ 37 (488)
T TIGR00551 2 SCDVVVIGSGAAGLSAALALADQG-R-VIVLSKAPVTE 37 (488)
T ss_pred CccEEEECccHHHHHHHHHHHhCC-C-EEEEEccCCCC
Confidence 579999999999999999999864 4 99999997644
No 303
>TIGR03378 glycerol3P_GlpB glycerol-3-phosphate dehydrogenase, anaerobic, B subunit. Members of this protein family are the B subunit, product of the glpB gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.
Probab=92.16 E-value=0.076 Score=59.97 Aligned_cols=60 Identities=15% Similarity=0.094 Sum_probs=46.4
Q ss_pred hccCCCCeEEEccceEeEEEEcCCCCeEEEEEEEECCeEEEEEeccEEEEccCCcCchHHHHhc
Q psy1205 512 PIISRNNLHILLNTTVTRVIVDPLTKAAIGVEFLTNGRLERLQAKNEVIVCAGAVDSPRILLLS 575 (868)
Q Consensus 512 ~~~~~~nl~I~~~~~V~rIl~d~~~~~a~GV~~~~~g~~~~v~A~k~VILAAGai~SP~LLl~S 575 (868)
...++.+.+++.++.|+++.++ ++++++|.. .+++...++|+ .||||+|++-|..|+-..
T Consensus 271 ~~~~~~Gg~il~g~~V~~i~~~--~~~v~~V~t-~~g~~~~l~AD-~vVLAaGaw~S~gL~a~l 330 (419)
T TIGR03378 271 HRFEQLGGVMLPGDRVLRAEFE--GNRVTRIHT-RNHRDIPLRAD-HFVLASGSFFSNGLVAEF 330 (419)
T ss_pred HHHHHCCCEEEECcEEEEEEee--CCeEEEEEe-cCCccceEECC-EEEEccCCCcCHHHHhhc
Confidence 3445668899999999999987 677888654 34435678896 699999999888886654
No 304
>PRK08641 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=92.08 E-value=0.078 Score=63.53 Aligned_cols=36 Identities=22% Similarity=0.324 Sum_probs=31.8
Q ss_pred ceEEEECCCchhhhHHhhhhccCcccccccCCCCCcc
Q psy1205 62 YDFIVIGGGSSGAVVANRLSEMNTCNCPVTQPGPTLA 98 (868)
Q Consensus 62 ~d~~~~g~~~~~~~~a~~~~~~~~~~~LvlE~G~~LG 98 (868)
.|+||||+|.||+.+|-++++. +.+|+|||.+...+
T Consensus 4 ~DVlVVG~G~AGl~AAi~Aa~~-G~~V~lieK~~~~~ 39 (589)
T PRK08641 4 GKVIVVGGGLAGLMATIKAAEA-GVHVDLFSLVPVKR 39 (589)
T ss_pred ccEEEECchHHHHHHHHHHHHc-CCcEEEEEccCCCC
Confidence 5999999999999999999885 78999999877643
No 305
>PRK10262 thioredoxin reductase; Provisional
Probab=92.02 E-value=0.075 Score=58.59 Aligned_cols=57 Identities=21% Similarity=0.320 Sum_probs=42.3
Q ss_pred ccCCCCeEEEccceEeEEEEcCCCCeEEEEEEEEC---CeEEEEEeccEEEEccCCcCchHHH
Q psy1205 513 IISRNNLHILLNTTVTRVIVDPLTKAAIGVEFLTN---GRLERLQAKNEVIVCAGAVDSPRIL 572 (868)
Q Consensus 513 ~~~~~nl~I~~~~~V~rIl~d~~~~~a~GV~~~~~---g~~~~v~A~k~VILAAGai~SP~LL 572 (868)
..+..++++++++.+++|.-+ +.++.+|++... +...++.++ .||++.|.--...|+
T Consensus 194 ~l~~~gV~i~~~~~v~~v~~~--~~~~~~v~~~~~~~~~~~~~i~~D-~vv~a~G~~p~~~l~ 253 (321)
T PRK10262 194 KVENGNIILHTNRTLEEVTGD--QMGVTGVRLRDTQNSDNIESLDVA-GLFVAIGHSPNTAIF 253 (321)
T ss_pred hccCCCeEEEeCCEEEEEEcC--CccEEEEEEEEcCCCCeEEEEECC-EEEEEeCCccChhHh
Confidence 345678999999999998644 456778887652 445678886 899999977766654
No 306
>TIGR03219 salicylate_mono salicylate 1-monooxygenase. Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway.
Probab=91.95 E-value=0.095 Score=60.01 Aligned_cols=34 Identities=26% Similarity=0.496 Sum_probs=30.4
Q ss_pred eEEEECCCchhhhHHhhhhccCcccccccCCCCC
Q psy1205 63 DFIVIGGGSSGAVVANRLSEMNTCNCPVTQPGPT 96 (868)
Q Consensus 63 d~~~~g~~~~~~~~a~~~~~~~~~~~LvlE~G~~ 96 (868)
.++|||||.+|+++|..|+.....+|.|+||-++
T Consensus 2 ~V~IiGgGiaGla~A~~L~~~g~~~v~v~Er~~~ 35 (414)
T TIGR03219 2 RVAIIGGGIAGVALALNLCKHSHLNVQLFEAAPA 35 (414)
T ss_pred eEEEECCCHHHHHHHHHHHhcCCCCEEEEecCCc
Confidence 4899999999999999999875579999999765
No 307
>TIGR00275 flavoprotein, HI0933 family. The model when searched with a partial length search brings in proteins with a dinucleotide-binding motif (Rossman fold) over the initial 40 residues of the model, including oxidoreductases and dehydrogenases. Partially characterized members include an FAD-binding protein from Bacillus cereus and flavoprotein HI0933 from Haemophilus influenzae.
Probab=91.87 E-value=0.061 Score=61.27 Aligned_cols=33 Identities=21% Similarity=0.392 Sum_probs=30.0
Q ss_pred EEECCCchhhhHHhhhhccCcccccccCCCCCcc
Q psy1205 65 IVIGGGSSGAVVANRLSEMNTCNCPVTQPGPTLA 98 (868)
Q Consensus 65 ~~~g~~~~~~~~a~~~~~~~~~~~LvlE~G~~LG 98 (868)
||||||.+|+++|..+++. +.+|+|||+.+.+|
T Consensus 1 vIIGgG~aGl~aAi~aa~~-G~~V~llEk~~~~G 33 (400)
T TIGR00275 1 IIIGGGAAGLMAAITAARE-GLSVLLLEKNKKIG 33 (400)
T ss_pred CEEEEeHHHHHHHHHHHhc-CCcEEEEecCcccc
Confidence 6899999999999999986 68999999998765
No 308
>TIGR02061 aprA adenosine phosphosulphate reductase, alpha subunit. During dissimilatory sulfate reduction or sulfur oxidation, adenylylsulfate (APS) reductase catalyzes reversibly the two-electron reduction of APS to sulfite and AMP. Found in several bacterial lineages and in Archaeoglobales, APS reductase is a heterodimer composed of an alpha subunit containing a noncovalently bound FAD, and a beta subunit containing two [4Fe-4S] clusters. Described by this model is the alpha subunit of APS reductase, sharing common evolutionary origin with fumarate reductase/succinate dehydrogenase flavoproteins.
Probab=91.84 E-value=0.085 Score=63.11 Aligned_cols=35 Identities=17% Similarity=0.252 Sum_probs=30.3
Q ss_pred eEEEECCCchhhhHHhhhhc---cCcccccccCCCCCc
Q psy1205 63 DFIVIGGGSSGAVVANRLSE---MNTCNCPVTQPGPTL 97 (868)
Q Consensus 63 d~~~~g~~~~~~~~a~~~~~---~~~~~~LvlE~G~~L 97 (868)
|+||||+|.||+.+|-++++ ..+.+|+|||.+...
T Consensus 1 DVlVIGsG~AGL~AAl~Aa~~~~e~G~~VilieK~~~~ 38 (614)
T TIGR02061 1 DLLIVGGGMGGCGAAFEAVYWGDKKGLKIVLVEKANLE 38 (614)
T ss_pred CEEEECCCHHHHHHHHHHHhhhhhCCCeEEEEEccCCC
Confidence 89999999999999999982 337899999998753
No 309
>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit. Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.
Probab=91.77 E-value=0.12 Score=64.55 Aligned_cols=39 Identities=18% Similarity=0.183 Sum_probs=35.2
Q ss_pred CCcceEEEECCCchhhhHHhhhhccCcccccccCCCCCcc
Q psy1205 59 DRDYDFIVIGGGSSGAVVANRLSEMNTCNCPVTQPGPTLA 98 (868)
Q Consensus 59 ~~~~d~~~~g~~~~~~~~a~~~~~~~~~~~LvlE~G~~LG 98 (868)
...+|++|||||+||+.+|..|+.. +.+|+|+|+...+|
T Consensus 535 ~~~kkVaIIGGGPAGLSAA~~LAr~-G~~VTV~Ek~~~lG 573 (1012)
T TIGR03315 535 SSAHKVAVIGAGPAGLSAGYFLARA-GHPVTVFEKKEKPG 573 (1012)
T ss_pred CCCCcEEEECCCHHHHHHHHHHHHC-CCeEEEEecccccC
Confidence 3568999999999999999999986 78999999998877
No 310
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=91.70 E-value=0.09 Score=66.22 Aligned_cols=36 Identities=31% Similarity=0.479 Sum_probs=32.5
Q ss_pred CcceEEEECCCchhhhHHhhhhccCcccccccCCCCC
Q psy1205 60 RDYDFIVIGGGSSGAVVANRLSEMNTCNCPVTQPGPT 96 (868)
Q Consensus 60 ~~~d~~~~g~~~~~~~~a~~~~~~~~~~~LvlE~G~~ 96 (868)
.++|+||||+|.||+.+|-.+++. +.+|+|||.+..
T Consensus 12 ~~~DVlVVG~G~AGl~AAl~Aa~~-G~~V~lleK~~~ 47 (897)
T PRK13800 12 LDCDVLVIGGGTAGTMAALTAAEH-GANVLLLEKAHV 47 (897)
T ss_pred eecCEEEECcCHHHHHHHHHHHHC-CCeEEEEecccc
Confidence 469999999999999999999875 689999999874
No 311
>PF00996 GDI: GDP dissociation inhibitor; InterPro: IPR018203 Rab proteins constitute a family of small GTPases that serve a regulatory role in vesicular membrane traffic [, ]; C-terminal geranylgeranylation is crucial for their membrane association and function. This post-translational modification is catalysed by Rab geranylgeranyl transferase (Rab-GGTase), a multi-subunit enzyme that contains a catalytic heterodimer and an accessory component, termed Rab escort protein (REP)-1 []. REP-1 presents newly- synthesised Rab proteins to the catalytic component, and forms a stable complex with the prenylated proteins following the transfer reaction. The mechanism of REP-1-mediated membrane association of Rab5 is similar to that mediated by Rab GDP dissociation inhibitor (GDI). REP-1 and Rab GDI also share other functional properties, including the ability to inhibit the release of GDP and to remove Rab proteins from membranes. The crystal structure of the bovine alpha-isoform of Rab GDI has been determined to a resolution of 1.81A []. The protein is composed of two main structural units: a large complex multi-sheet domain I, and a smaller alpha-helical domain II. The structural organisation of domain I is closely related to FAD-containing monooxygenases and oxidases []. Conserved regions common to GDI and the choroideraemia gene product, which delivers Rab to catalytic subunits of Rab geranylgeranyltransferase II, are clustered on one face of the domain []. The two most conserved regions form a compact structure at the apex of the molecule; site-directed mutagenesis has shown these regions to play a critical role in the binding of Rab proteins [].; PDB: 1VG9_C 1VG0_A 1LTX_R 3P1W_A 3CPH_H 3CPJ_G 3CPI_H 1UKV_G 2BCG_G 1GND_A ....
Probab=91.50 E-value=0.11 Score=59.09 Aligned_cols=39 Identities=23% Similarity=0.377 Sum_probs=30.9
Q ss_pred CCcceEEEECCCchhhhHHhhhhccCcccccccCCCCCcc
Q psy1205 59 DRDYDFIVIGGGSSGAVVANRLSEMNTCNCPVTQPGPTLA 98 (868)
Q Consensus 59 ~~~~d~~~~g~~~~~~~~a~~~~~~~~~~~LvlE~G~~LG 98 (868)
+++||+||+|.|..-|.+|+.||.. +.|||.|+|...-|
T Consensus 2 ~~~yDviI~GTGl~esila~als~~-GkkVLhiD~n~yYG 40 (438)
T PF00996_consen 2 DEEYDVIILGTGLTESILAAALSRS-GKKVLHIDRNDYYG 40 (438)
T ss_dssp -SBESEEEE--SHHHHHHHHHHHHT-T--EEEE-SSSSSC
T ss_pred CccceEEEECCCcHHHHHHHHHHhc-CCEEEecCCCCCcC
Confidence 4689999999999999999999987 89999999999877
No 312
>PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase
Probab=91.25 E-value=0.11 Score=62.14 Aligned_cols=35 Identities=23% Similarity=0.282 Sum_probs=32.3
Q ss_pred CcceEEEECCCchhhhHHhhhhccCcccccccCCCC
Q psy1205 60 RDYDFIVIGGGSSGAVVANRLSEMNTCNCPVTQPGP 95 (868)
Q Consensus 60 ~~~d~~~~g~~~~~~~~a~~~~~~~~~~~LvlE~G~ 95 (868)
..+++||||||.+|+++|..|+.. +++|.|+||.+
T Consensus 80 ~~~~VlIVGgGIaGLalAlaL~r~-Gi~V~V~Er~~ 114 (668)
T PLN02927 80 KKSRVLVAGGGIGGLVFALAAKKK-GFDVLVFEKDL 114 (668)
T ss_pred CCCCEEEECCCHHHHHHHHHHHhc-CCeEEEEeccc
Confidence 568999999999999999999986 79999999975
No 313
>COG1232 HemY Protoporphyrinogen oxidase [Coenzyme metabolism]
Probab=91.23 E-value=0.13 Score=58.61 Aligned_cols=35 Identities=23% Similarity=0.398 Sum_probs=32.3
Q ss_pred EEEECCCchhhhHHhhhhc-cCcccccccCCCCCcc
Q psy1205 64 FIVIGGGSSGAVVANRLSE-MNTCNCPVTQPGPTLA 98 (868)
Q Consensus 64 ~~~~g~~~~~~~~a~~~~~-~~~~~~LvlE~G~~LG 98 (868)
++|||||.+|+.+|.+|.+ .|++.|.|+|++..+|
T Consensus 3 i~IiG~GiaGLsaAy~L~k~~p~~~i~lfE~~~r~G 38 (444)
T COG1232 3 IAIIGGGIAGLSAAYRLQKAGPDVEVTLFEADDRVG 38 (444)
T ss_pred EEEECCcHHHHHHHHHHHHhCCCCcEEEEecCCCCC
Confidence 7899999999999999988 5679999999999887
No 314
>COG1053 SdhA Succinate dehydrogenase/fumarate reductase, flavoprotein subunit [Energy production and conversion]
Probab=91.19 E-value=0.11 Score=61.46 Aligned_cols=38 Identities=26% Similarity=0.500 Sum_probs=34.0
Q ss_pred CcceEEEECCCchhhhHHhhhhccCcccccccCCCCCcc
Q psy1205 60 RDYDFIVIGGGSSGAVVANRLSEMNTCNCPVTQPGPTLA 98 (868)
Q Consensus 60 ~~~d~~~~g~~~~~~~~a~~~~~~~~~~~LvlE~G~~LG 98 (868)
.+||+||||||.|||.+|...++.+ .+|+|||.....+
T Consensus 5 ~~~DvvVIG~G~AGl~AAi~aa~~g-~~V~l~~K~~~~r 42 (562)
T COG1053 5 HEFDVVVIGGGGAGLRAAIEAAEAG-LKVALLSKAPPKR 42 (562)
T ss_pred ccCCEEEECCcHHHHHHHHHHHhcC-CcEEEEEccccCC
Confidence 4799999999999999999999974 9999999887644
No 315
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=91.06 E-value=0.13 Score=60.69 Aligned_cols=58 Identities=26% Similarity=0.307 Sum_probs=46.8
Q ss_pred CCCCeEEEccceEeEEEEcCCCCeEEEEEEEE--CCeEEEEEeccEEEEccCCcCchHHHHhc
Q psy1205 515 SRNNLHILLNTTVTRVIVDPLTKAAIGVEFLT--NGRLERLQAKNEVIVCAGAVDSPRILLLS 575 (868)
Q Consensus 515 ~~~nl~I~~~~~V~rIl~d~~~~~a~GV~~~~--~g~~~~v~A~k~VILAAGai~SP~LLl~S 575 (868)
+.+|+++++++.|+++.-+ ++++++|++.+ +++..++.++ .|+++.|..-.+.+|..+
T Consensus 398 ~~~gI~i~~~~~v~~i~~~--~g~v~~v~~~~~~~g~~~~i~~D-~v~~~~G~~p~~~~l~~~ 457 (517)
T PRK15317 398 SLPNVTIITNAQTTEVTGD--GDKVTGLTYKDRTTGEEHHLELE-GVFVQIGLVPNTEWLKGT 457 (517)
T ss_pred cCCCcEEEECcEEEEEEcC--CCcEEEEEEEECCCCcEEEEEcC-EEEEeECCccCchHHhhh
Confidence 3469999999999999754 57888888875 5666789996 899999998888877543
No 316
>PRK07512 L-aspartate oxidase; Provisional
Probab=91.00 E-value=0.11 Score=61.18 Aligned_cols=34 Identities=26% Similarity=0.427 Sum_probs=30.5
Q ss_pred CcceEEEECCCchhhhHHhhhhccCcccccccCCCCC
Q psy1205 60 RDYDFIVIGGGSSGAVVANRLSEMNTCNCPVTQPGPT 96 (868)
Q Consensus 60 ~~~d~~~~g~~~~~~~~a~~~~~~~~~~~LvlE~G~~ 96 (868)
.++|+||||+|.||+.+|-++++ .+|+|||.+..
T Consensus 8 ~~~DVlVIG~G~AGl~AAl~Aa~---~~V~lleK~~~ 41 (513)
T PRK07512 8 LTGRPVIVGGGLAGLMAALKLAP---RPVVVLSPAPL 41 (513)
T ss_pred CcCCEEEECchHHHHHHHHHhCc---CCEEEEECCCC
Confidence 46899999999999999999974 49999999986
No 317
>TIGR00137 gid_trmFO tRNA:m(5)U-54 methyltransferase. This model represents an orthologous set of proteins present in relatively few bacteria but very tightly conserved where it occurs. It is closely related to gidA (glucose-inhibited division protein A), which appears to be present in all complete eubacterial genomes so far and in Saccharomyces cerevisiae. It was designated gid but is now recognized as a tRNA:m(5)U-54 methyltransferase and is now designated trmFO.
Probab=90.95 E-value=0.13 Score=58.51 Aligned_cols=35 Identities=26% Similarity=0.321 Sum_probs=31.5
Q ss_pred eEEEECCCchhhhHHhhhhccCcccccccCCCCCcc
Q psy1205 63 DFIVIGGGSSGAVVANRLSEMNTCNCPVTQPGPTLA 98 (868)
Q Consensus 63 d~~~~g~~~~~~~~a~~~~~~~~~~~LvlE~G~~LG 98 (868)
|++|||||.+||.+|..|++. +++|+|+|+.+..+
T Consensus 2 ~VvVIGgGlAGleaA~~LAr~-G~~V~LiE~rp~~~ 36 (433)
T TIGR00137 2 PVHVIGGGLAGSEAAWQLAQA-GVPVILYEMRPEKL 36 (433)
T ss_pred CEEEECCCHHHHHHHHHHHhC-CCcEEEEecccccc
Confidence 789999999999999999986 79999999887644
No 318
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=90.90 E-value=0.45 Score=53.54 Aligned_cols=34 Identities=21% Similarity=0.381 Sum_probs=30.1
Q ss_pred eEEEECCCchhhhHHhhhhccC-cccccccCCCCC
Q psy1205 63 DFIVIGGGSSGAVVANRLSEMN-TCNCPVTQPGPT 96 (868)
Q Consensus 63 d~~~~g~~~~~~~~a~~~~~~~-~~~~LvlE~G~~ 96 (868)
-++|||||-+|.-+|.+|...+ +.+|.||++-..
T Consensus 5 ~iVIlGgGfgGl~~a~~l~~~~~~~~itLVd~~~~ 39 (405)
T COG1252 5 RIVILGGGFGGLSAAKRLARKLPDVEITLVDRRDY 39 (405)
T ss_pred eEEEECCcHHHHHHHHHhhhcCCCCcEEEEeCCCc
Confidence 4799999999999999999864 688999999865
No 319
>TIGR02731 phytoene_desat phytoene desaturase. Plants and cyanobacteria (and, supposedly, Chlorobium tepidum) have a conserved pathway from two molecules geranylgeranyl-PP to one of all-trans-lycopene. Members of this family are the enzyme pytoene desaturase (also called phytoene dehydrogenase). This model does not include the region of the chloroplast transit peptide in plants. A closely related family, excluded by this model, is zeta-carotene desaturase, another enzyme in the same pathway.
Probab=90.88 E-value=0.14 Score=59.51 Aligned_cols=35 Identities=20% Similarity=0.251 Sum_probs=31.9
Q ss_pred eEEEECCCchhhhHHhhhhccCcccccccCCCCCcc
Q psy1205 63 DFIVIGGGSSGAVVANRLSEMNTCNCPVTQPGPTLA 98 (868)
Q Consensus 63 d~~~~g~~~~~~~~a~~~~~~~~~~~LvlE~G~~LG 98 (868)
+++|||||.+|+++|..|++. +.+|+|||+.+.+|
T Consensus 1 ~v~IiGaG~aGl~aA~~L~~~-G~~v~vlE~~~~~G 35 (453)
T TIGR02731 1 RVAIAGAGLAGLSCAKYLADA-GHTPIVLEARDVLG 35 (453)
T ss_pred CEEEECCCHHHHHHHHHHHHC-CCcEEEEecCCCCC
Confidence 479999999999999999986 68999999998877
No 320
>PRK06475 salicylate hydroxylase; Provisional
Probab=90.84 E-value=0.13 Score=58.47 Aligned_cols=33 Identities=15% Similarity=0.252 Sum_probs=29.8
Q ss_pred eEEEECCCchhhhHHhhhhccCcccccccCCCCC
Q psy1205 63 DFIVIGGGSSGAVVANRLSEMNTCNCPVTQPGPT 96 (868)
Q Consensus 63 d~~~~g~~~~~~~~a~~~~~~~~~~~LvlE~G~~ 96 (868)
+++|||||.+|+.+|..|++. +++|.|+|+-+.
T Consensus 4 ~V~IvGgGiaGl~~A~~L~~~-G~~V~i~E~~~~ 36 (400)
T PRK06475 4 SPLIAGAGVAGLSAALELAAR-GWAVTIIEKAQE 36 (400)
T ss_pred cEEEECCCHHHHHHHHHHHhC-CCcEEEEecCCc
Confidence 689999999999999999875 799999998764
No 321
>KOG2820|consensus
Probab=90.82 E-value=0.15 Score=54.70 Aligned_cols=36 Identities=22% Similarity=0.306 Sum_probs=32.4
Q ss_pred CcceEEEECCCchhhhHHhhhhccCcccccccCCCCC
Q psy1205 60 RDYDFIVIGGGSSGAVVANRLSEMNTCNCPVTQPGPT 96 (868)
Q Consensus 60 ~~~d~~~~g~~~~~~~~a~~~~~~~~~~~LvlE~G~~ 96 (868)
...|.||||+|.-||.+|..|+.. +.++||||+=+.
T Consensus 6 ~~~~viiVGAGVfG~stAyeLaK~-g~killLeqf~~ 41 (399)
T KOG2820|consen 6 KSRDVIIVGAGVFGLSTAYELAKR-GDKILLLEQFPL 41 (399)
T ss_pred cceeEEEEcccccchHHHHHHHhc-CCeEEEEeccCC
Confidence 568999999999999999999997 599999998663
No 322
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=90.71 E-value=0.2 Score=57.95 Aligned_cols=40 Identities=23% Similarity=0.318 Sum_probs=35.2
Q ss_pred CCCcceEEEECCCchhhhHHhhhhccCcccccccCCCCCcc
Q psy1205 58 PDRDYDFIVIGGGSSGAVVANRLSEMNTCNCPVTQPGPTLA 98 (868)
Q Consensus 58 ~~~~~d~~~~g~~~~~~~~a~~~~~~~~~~~LvlE~G~~LG 98 (868)
+...+|++|||+|.+|+.+|..|+.. +.+|.|+|+...+|
T Consensus 130 ~~~~~~V~IIG~G~aGl~aA~~l~~~-G~~V~vie~~~~~G 169 (449)
T TIGR01316 130 PSTHKKVAVIGAGPAGLACASELAKA-GHSVTVFEALHKPG 169 (449)
T ss_pred CCCCCEEEEECcCHHHHHHHHHHHHC-CCcEEEEecCCCCC
Confidence 34578999999999999999999975 78999999987765
No 323
>COG2509 Uncharacterized FAD-dependent dehydrogenases [General function prediction only]
Probab=90.68 E-value=0.75 Score=51.57 Aligned_cols=35 Identities=26% Similarity=0.592 Sum_probs=30.2
Q ss_pred CCcceEEecCCCccceeecccccC----CCceEEEecCC
Q psy1205 138 RDYDFIVIGGGSSGAVVANRLSEV----PNWRVLLIEAG 172 (868)
Q Consensus 138 ~~~d~vi~g~G~~G~~~a~~ls~~----~~~~v~l~~ag 172 (868)
..+|.+|+|+|.+|+..+.++|.. +...|++++-|
T Consensus 17 ~~~~vvivgag~~g~f~a~~~s~~ar~~~~~~i~~vd~g 55 (486)
T COG2509 17 AALDVVIVGAGPAGLFAAYELSGDARKVPILKIYVVDVG 55 (486)
T ss_pred hccceEEECCCchHHHHHHHHhhhcccCCceEEEEEEec
Confidence 458899999999999999999864 57788999877
No 324
>PRK12831 putative oxidoreductase; Provisional
Probab=90.67 E-value=0.2 Score=58.23 Aligned_cols=40 Identities=20% Similarity=0.316 Sum_probs=35.1
Q ss_pred CCCcceEEEECCCchhhhHHhhhhccCcccccccCCCCCcc
Q psy1205 58 PDRDYDFIVIGGGSSGAVVANRLSEMNTCNCPVTQPGPTLA 98 (868)
Q Consensus 58 ~~~~~d~~~~g~~~~~~~~a~~~~~~~~~~~LvlE~G~~LG 98 (868)
+...+|++|||||+||+.+|..|+.. +.+|.|+|+...+|
T Consensus 137 ~~~~~~V~IIG~GpAGl~aA~~l~~~-G~~V~v~e~~~~~G 176 (464)
T PRK12831 137 EKKGKKVAVIGSGPAGLTCAGDLAKM-GYDVTIFEALHEPG 176 (464)
T ss_pred CCCCCEEEEECcCHHHHHHHHHHHhC-CCeEEEEecCCCCC
Confidence 34678999999999999999999986 78999999977655
No 325
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=90.63 E-value=0.18 Score=58.73 Aligned_cols=39 Identities=18% Similarity=0.333 Sum_probs=35.0
Q ss_pred CCcceEEEECCCchhhhHHhhhhccCcccccccCCCCCcc
Q psy1205 59 DRDYDFIVIGGGSSGAVVANRLSEMNTCNCPVTQPGPTLA 98 (868)
Q Consensus 59 ~~~~d~~~~g~~~~~~~~a~~~~~~~~~~~LvlE~G~~LG 98 (868)
...+|++|||+|.+|+.+|..|+.. +.+|+|+|+.+.+|
T Consensus 141 ~~~~~VvIIGaGpAGl~aA~~l~~~-G~~V~vie~~~~~G 179 (471)
T PRK12810 141 RTGKKVAVVGSGPAGLAAADQLARA-GHKVTVFERADRIG 179 (471)
T ss_pred CCCCEEEEECcCHHHHHHHHHHHhC-CCcEEEEecCCCCC
Confidence 3568999999999999999999985 78999999998876
No 326
>KOG2960|consensus
Probab=90.48 E-value=0.089 Score=52.34 Aligned_cols=37 Identities=16% Similarity=0.368 Sum_probs=32.3
Q ss_pred CcceEEEECCCchhhhHHhhhhc-cCcccccccCCCCC
Q psy1205 60 RDYDFIVIGGGSSGAVVANRLSE-MNTCNCPVTQPGPT 96 (868)
Q Consensus 60 ~~~d~~~~g~~~~~~~~a~~~~~-~~~~~~LvlE~G~~ 96 (868)
.+-|+||||+|++|+..|.-++. +|+++|-+||..-.
T Consensus 75 AesDvviVGAGSaGLsAAY~I~~~rPdlkvaIIE~SVa 112 (328)
T KOG2960|consen 75 AESDVVIVGAGSAGLSAAYVIAKNRPDLKVAIIESSVA 112 (328)
T ss_pred hccceEEECCCccccceeeeeeccCCCceEEEEEeeec
Confidence 35699999999999999999984 78999999998543
No 327
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=90.30 E-value=0.23 Score=57.77 Aligned_cols=40 Identities=23% Similarity=0.397 Sum_probs=35.4
Q ss_pred CCCcceEEEECCCchhhhHHhhhhccCcccccccCCCCCcc
Q psy1205 58 PDRDYDFIVIGGGSSGAVVANRLSEMNTCNCPVTQPGPTLA 98 (868)
Q Consensus 58 ~~~~~d~~~~g~~~~~~~~a~~~~~~~~~~~LvlE~G~~LG 98 (868)
+...++++|||||.+|+.+|..|+.. +.+|.|+|+...+|
T Consensus 137 ~~~~~~VvIIGgGpaGl~aA~~l~~~-g~~V~lie~~~~~g 176 (457)
T PRK11749 137 PKTGKKVAVIGAGPAGLTAAHRLARK-GYDVTIFEARDKAG 176 (457)
T ss_pred ccCCCcEEEECCCHHHHHHHHHHHhC-CCeEEEEccCCCCC
Confidence 34568999999999999999999876 68999999998876
No 328
>PRK10015 oxidoreductase; Provisional
Probab=90.22 E-value=0.53 Score=54.16 Aligned_cols=52 Identities=17% Similarity=0.306 Sum_probs=37.9
Q ss_pred hhhhhhccCCCCeEEEccceEeEEEEcCCCCeEEEEEEEECCeEEEEEeccEEEEccCC
Q psy1205 507 KAFLRPIISRNNLHILLNTTVTRVIVDPLTKAAIGVEFLTNGRLERLQAKNEVIVCAGA 565 (868)
Q Consensus 507 ~~~L~~~~~~~nl~I~~~~~V~rIl~d~~~~~a~GV~~~~~g~~~~v~A~k~VILAAGa 565 (868)
..+|...++..+++++.+++|+.|..+ ++++.+|.. ++ .+++|+ .||+|.|+
T Consensus 111 d~~L~~~a~~~Gv~i~~~~~V~~i~~~--~~~v~~v~~--~~--~~i~A~-~VI~AdG~ 162 (429)
T PRK10015 111 DPWLMEQAEQAGAQFIPGVRVDALVRE--GNKVTGVQA--GD--DILEAN-VVILADGV 162 (429)
T ss_pred HHHHHHHHHHcCCEEECCcEEEEEEEe--CCEEEEEEe--CC--eEEECC-EEEEccCc
Confidence 345555555678999999999999876 456766642 33 368885 89999996
No 329
>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form. This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=90.12 E-value=0.17 Score=64.38 Aligned_cols=38 Identities=18% Similarity=0.332 Sum_probs=34.5
Q ss_pred CcceEEEECCCchhhhHHhhhhccCcccccccCCCCCcc
Q psy1205 60 RDYDFIVIGGGSSGAVVANRLSEMNTCNCPVTQPGPTLA 98 (868)
Q Consensus 60 ~~~d~~~~g~~~~~~~~a~~~~~~~~~~~LvlE~G~~LG 98 (868)
..+|++|||||+||+.+|..++.. +.+|+|+|++..+|
T Consensus 162 ~~~dVvIIGaGPAGLaAA~~aar~-G~~V~liD~~~~~G 199 (985)
T TIGR01372 162 AHCDVLVVGAGPAGLAAALAAARA-GARVILVDEQPEAG 199 (985)
T ss_pred ccCCEEEECCCHHHHHHHHHHHhC-CCcEEEEecCCCCC
Confidence 468999999999999999999874 89999999998877
No 330
>COG3349 Uncharacterized conserved protein [Function unknown]
Probab=89.99 E-value=0.19 Score=57.37 Aligned_cols=34 Identities=18% Similarity=0.331 Sum_probs=32.3
Q ss_pred EEEECCCchhhhHHhhhhccCcccccccCCCCCcc
Q psy1205 64 FIVIGGGSSGAVVANRLSEMNTCNCPVTQPGPTLA 98 (868)
Q Consensus 64 ~~~~g~~~~~~~~a~~~~~~~~~~~LvlE~G~~LG 98 (868)
++|+|||.||+.+|..|++. ++.|-|+||+..||
T Consensus 3 Vai~GaG~AgL~~a~~La~~-g~~vt~~ea~~~~G 36 (485)
T COG3349 3 VAIAGAGLAGLAAAYELADA-GYDVTLYEARDRLG 36 (485)
T ss_pred EEEEcccHHHHHHHHHHHhC-CCceEEEeccCccC
Confidence 68999999999999999987 69999999999988
No 331
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=89.82 E-value=0.27 Score=49.93 Aligned_cols=31 Identities=19% Similarity=0.262 Sum_probs=22.9
Q ss_pred cccCCCcchhhhhhhhhcccccchhhhhhhhhhc
Q psy1205 332 VTSGSAPLGGIQALRITRQDLVRWDQHLILALSC 365 (868)
Q Consensus 332 ~~~g~~~~g~~~a~~~~~~g~~~~~~~~~~~~~~ 365 (868)
+++|.|.+|.++|.+|.+.|++ ++.++|+.+
T Consensus 1 ~IIGaG~aGl~~a~~l~~~g~~---~v~v~e~~~ 31 (203)
T PF13738_consen 1 VIIGAGPAGLAAAAHLLERGID---PVVVLERND 31 (203)
T ss_dssp EEE--SHHHHHHHHHHHHTT------EEEEESSS
T ss_pred CEECcCHHHHHHHHHHHhCCCC---cEEEEeCCC
Confidence 3689999999999999999982 378888776
No 332
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=89.68 E-value=0.18 Score=59.43 Aligned_cols=55 Identities=24% Similarity=0.360 Sum_probs=43.7
Q ss_pred CCCeEEEccceEeEEEEcCCCCeEEEEEEEE--CCeEEEEEeccEEEEccCCcCchHHHH
Q psy1205 516 RNNLHILLNTTVTRVIVDPLTKAAIGVEFLT--NGRLERLQAKNEVIVCAGAVDSPRILL 573 (868)
Q Consensus 516 ~~nl~I~~~~~V~rIl~d~~~~~a~GV~~~~--~g~~~~v~A~k~VILAAGai~SP~LLl 573 (868)
+.|++|++++.|+++.-+ ++++.+|++.+ +++..++.++ .||+|.|..-++.+|-
T Consensus 400 ~~gV~i~~~~~v~~i~~~--~~~v~~v~~~~~~~~~~~~i~~D-~vi~a~G~~Pn~~~l~ 456 (515)
T TIGR03140 400 LPNVDILTSAQTTEIVGD--GDKVTGIRYQDRNSGEEKQLDLD-GVFVQIGLVPNTEWLK 456 (515)
T ss_pred CCCCEEEECCeeEEEEcC--CCEEEEEEEEECCCCcEEEEEcC-EEEEEeCCcCCchHHh
Confidence 468999999999999654 56788888765 4556778886 8999999888777764
No 333
>KOG1335|consensus
Probab=89.51 E-value=0.22 Score=54.19 Aligned_cols=45 Identities=29% Similarity=0.477 Sum_probs=38.5
Q ss_pred CcceEEEECCCchhhhHHhhhhccCcccccccCCCCCcc-ccchhhH
Q psy1205 60 RDYDFIVIGGGSSGAVVANRLSEMNTCNCPVTQPGPTLA-STCGGSA 105 (868)
Q Consensus 60 ~~~d~~~~g~~~~~~~~a~~~~~~~~~~~LvlE~G~~LG-s~iN~~~ 105 (868)
.+||++|||+|++|.++|-+-++- +.+-.-+|.-+.|| +|.|-+.
T Consensus 38 ~d~DvvvIG~GpGGyvAAikAaQl-GlkTacvEkr~~LGGTcLnvGc 83 (506)
T KOG1335|consen 38 NDYDVVVIGGGPGGYVAAIKAAQL-GLKTACVEKRGTLGGTCLNVGC 83 (506)
T ss_pred ccCCEEEECCCCchHHHHHHHHHh-cceeEEEeccCccCceeeeccc
Confidence 479999999999999999999886 78888889988888 7777554
No 334
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=89.41 E-value=0.46 Score=57.99 Aligned_cols=32 Identities=22% Similarity=0.222 Sum_probs=27.2
Q ss_pred CccccCCCcchhhhhhhhhcccccchhhhhhhhhhc
Q psy1205 330 PAVTSGSAPLGGIQALRITRQDLVRWDQHLILALSC 365 (868)
Q Consensus 330 p~~~~g~~~~g~~~a~~~~~~g~~~~~~~~~~~~~~ 365 (868)
..+++|.|.+|+.+|+.|++.|. +|.++|+..
T Consensus 262 dVvIIGaGIaG~s~A~~La~~G~----~V~VlE~~~ 293 (662)
T PRK01747 262 DAAIIGGGIAGAALALALARRGW----QVTLYEADE 293 (662)
T ss_pred CEEEECccHHHHHHHHHHHHCCC----eEEEEecCC
Confidence 35789999999999999999997 577777764
No 335
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=89.25 E-value=0.21 Score=58.12 Aligned_cols=41 Identities=20% Similarity=0.338 Sum_probs=35.3
Q ss_pred eEEEECCCchhhhHHhhhhccCcccccccCCCCCcc-ccchhhH
Q psy1205 63 DFIVIGGGSSGAVVANRLSEMNTCNCPVTQPGPTLA-STCGGSA 105 (868)
Q Consensus 63 d~~~~g~~~~~~~~a~~~~~~~~~~~LvlE~G~~LG-s~iN~~~ 105 (868)
|+||||+|++|..+|.++++. +.+|+|+|++. +| +|+|.+.
T Consensus 3 ~vvviG~G~~G~~~a~~~~~~-g~~v~~~e~~~-~gG~c~~~gc 44 (466)
T PRK07845 3 RIVIIGGGPGGYEAALVAAQL-GADVTVIERDG-LGGAAVLTDC 44 (466)
T ss_pred cEEEECCCHHHHHHHHHHHhC-CCeEEEEEccC-CCCcccccCC
Confidence 799999999999999999986 78999999986 66 7777553
No 336
>KOG0685|consensus
Probab=89.18 E-value=0.23 Score=55.80 Aligned_cols=36 Identities=22% Similarity=0.416 Sum_probs=33.5
Q ss_pred eEEEECCCchhhhHHhhhhccCcccccccCCCCCcc
Q psy1205 63 DFIVIGGGSSGAVVANRLSEMNTCNCPVTQPGPTLA 98 (868)
Q Consensus 63 d~~~~g~~~~~~~~a~~~~~~~~~~~LvlE~G~~LG 98 (868)
-++|||+|.||+.+|.||-++....|+|+|+...+|
T Consensus 23 kIvIIGAG~AGLaAA~rLle~gf~~~~IlEa~dRIG 58 (498)
T KOG0685|consen 23 KIVIIGAGIAGLAAATRLLENGFIDVLILEASDRIG 58 (498)
T ss_pred eEEEECCchHHHHHHHHHHHhCCceEEEEEeccccC
Confidence 689999999999999999987778999999999877
No 337
>COG3075 GlpB Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism]
Probab=88.75 E-value=0.25 Score=52.75 Aligned_cols=57 Identities=12% Similarity=0.003 Sum_probs=45.8
Q ss_pred hhhhccCCCCeEEEccceEeEEEEcCCCCeEEEEEEEECCeEEEEEeccEEEEccCCcCch
Q psy1205 509 FLRPIISRNNLHILLNTTVTRVIVDPLTKAAIGVEFLTNGRLERLQAKNEVIVCAGAVDSP 569 (868)
Q Consensus 509 ~L~~~~~~~nl~I~~~~~V~rIl~d~~~~~a~GV~~~~~g~~~~v~A~k~VILAAGai~SP 569 (868)
-|....++.+..++++-.|.+..+. +++++.|..+ +...+-++|+ ++|||+|+|-|-
T Consensus 263 ~L~~~f~~~Gg~~m~Gd~V~~a~~~--~~~v~~i~tr-n~~diP~~a~-~~VLAsGsffsk 319 (421)
T COG3075 263 QLQRQFEQLGGLWMPGDEVKKATCK--GGRVTEIYTR-NHADIPLRAD-FYVLASGSFFSK 319 (421)
T ss_pred HHHHHHHHcCceEecCCceeeeeee--CCeEEEEEec-ccccCCCChh-Heeeeccccccc
Confidence 3445556778889999999999987 7889888644 7788889996 899999998553
No 338
>PLN02612 phytoene desaturase
Probab=88.68 E-value=0.29 Score=58.42 Aligned_cols=38 Identities=16% Similarity=0.279 Sum_probs=34.1
Q ss_pred CcceEEEECCCchhhhHHhhhhccCcccccccCCCCCcc
Q psy1205 60 RDYDFIVIGGGSSGAVVANRLSEMNTCNCPVTQPGPTLA 98 (868)
Q Consensus 60 ~~~d~~~~g~~~~~~~~a~~~~~~~~~~~LvlE~G~~LG 98 (868)
..++++|||+|.+|+++|..|++. +.+|+|+|+...+|
T Consensus 92 ~~~~v~iiG~G~~Gl~~a~~l~~~-g~~~~~~e~~~~~g 129 (567)
T PLN02612 92 KPLKVVIAGAGLAGLSTAKYLADA-GHKPILLEARDVLG 129 (567)
T ss_pred CCCCEEEECCCHHHHHHHHHHHhc-CCeEEEEecCCCCC
Confidence 458999999999999999999985 68999999988766
No 339
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=88.60 E-value=0.27 Score=41.85 Aligned_cols=34 Identities=29% Similarity=0.463 Sum_probs=30.6
Q ss_pred EEEECCCchhhhHHhhhhccCcccccccCCCCCcc
Q psy1205 64 FIVIGGGSSGAVVANRLSEMNTCNCPVTQPGPTLA 98 (868)
Q Consensus 64 ~~~~g~~~~~~~~a~~~~~~~~~~~LvlE~G~~LG 98 (868)
++|||||..|+-+|..|++. +.+|.||||++.+.
T Consensus 2 vvViGgG~ig~E~A~~l~~~-g~~vtli~~~~~~~ 35 (80)
T PF00070_consen 2 VVVIGGGFIGIELAEALAEL-GKEVTLIERSDRLL 35 (80)
T ss_dssp EEEESSSHHHHHHHHHHHHT-TSEEEEEESSSSSS
T ss_pred EEEECcCHHHHHHHHHHHHh-CcEEEEEeccchhh
Confidence 58999999999999999985 68999999999854
No 340
>PLN02529 lysine-specific histone demethylase 1
Probab=88.41 E-value=0.36 Score=58.72 Aligned_cols=38 Identities=18% Similarity=0.273 Sum_probs=34.3
Q ss_pred CcceEEEECCCchhhhHHhhhhccCcccccccCCCCCcc
Q psy1205 60 RDYDFIVIGGGSSGAVVANRLSEMNTCNCPVTQPGPTLA 98 (868)
Q Consensus 60 ~~~d~~~~g~~~~~~~~a~~~~~~~~~~~LvlE~G~~LG 98 (868)
..+|+||||+|.+|+.+|..|++. +.+|+|+|+-..+|
T Consensus 159 ~~~~v~viGaG~aGl~aA~~l~~~-g~~v~v~E~~~~~G 196 (738)
T PLN02529 159 TEGSVIIVGAGLAGLAAARQLLSF-GFKVVVLEGRNRPG 196 (738)
T ss_pred CCCCEEEECcCHHHHHHHHHHHHc-CCcEEEEecCccCc
Confidence 568999999999999999999875 78999999988776
No 341
>PLN02852 ferredoxin-NADP+ reductase
Probab=88.23 E-value=0.41 Score=55.64 Aligned_cols=39 Identities=21% Similarity=0.331 Sum_probs=34.6
Q ss_pred CcceEEEECCCchhhhHHhhhhc-cCcccccccCCCCCcc
Q psy1205 60 RDYDFIVIGGGSSGAVVANRLSE-MNTCNCPVTQPGPTLA 98 (868)
Q Consensus 60 ~~~d~~~~g~~~~~~~~a~~~~~-~~~~~~LvlE~G~~LG 98 (868)
....+.|||+|+||+.+|..|.+ ..+.+|.|+||-+.+|
T Consensus 25 ~~~~VaIVGaGPAGl~AA~~L~~~~~g~~Vtv~E~~p~pg 64 (491)
T PLN02852 25 EPLHVCVVGSGPAGFYTADKLLKAHDGARVDIIERLPTPF 64 (491)
T ss_pred CCCcEEEECccHHHHHHHHHHHhhCCCCeEEEEecCCCCc
Confidence 45789999999999999999985 4589999999999876
No 342
>PRK13977 myosin-cross-reactive antigen; Provisional
Probab=88.22 E-value=0.32 Score=57.04 Aligned_cols=38 Identities=16% Similarity=0.065 Sum_probs=34.0
Q ss_pred cceEEEECCCchhhhHHhhhhcc---CcccccccCCCCCcc
Q psy1205 61 DYDFIVIGGGSSGAVVANRLSEM---NTCNCPVTQPGPTLA 98 (868)
Q Consensus 61 ~~d~~~~g~~~~~~~~a~~~~~~---~~~~~LvlE~G~~LG 98 (868)
.-+++|||||.||+++|..|.++ ++.+|.|||+...+|
T Consensus 22 ~~~a~IIGaGiAGLAAA~~L~~dg~~~G~~VtIlEk~~~~G 62 (576)
T PRK13977 22 NKKAYIIGSGLASLAAAVFLIRDGQMPGENITILEELDVPG 62 (576)
T ss_pred CCeEEEECCCHHHHHHHHHHHHccCCCCCcEEEEeCCCCCC
Confidence 35899999999999999999986 468999999998877
No 343
>TIGR02732 zeta_caro_desat carotene 7,8-desaturase. Carotene 7,8-desaturase, also called zeta-carotene desaturase, catalyzes multiple steps in the pathway from geranylgeranyl-PP to all-trans-lycopene in plants and cyanobacteria. A similar enzyme and pathway is found in the green sulfur bacterium Chlorobium tepidum.
Probab=88.08 E-value=0.28 Score=57.24 Aligned_cols=57 Identities=11% Similarity=0.112 Sum_probs=41.1
Q ss_pred CCCCeEEEccceEeEEEEcCC--CC-eEEEEEEEECCeEEEEEeccEEEEccCCcCchHHH
Q psy1205 515 SRNNLHILLNTTVTRVIVDPL--TK-AAIGVEFLTNGRLERLQAKNEVIVCAGAVDSPRIL 572 (868)
Q Consensus 515 ~~~nl~I~~~~~V~rIl~d~~--~~-~a~GV~~~~~g~~~~v~A~k~VILAAGai~SP~LL 572 (868)
++.+.+|++++.|++|..+++ +. ++++|++.+.+....+.|+ .||+|+..-...+||
T Consensus 230 ~~~Gg~i~~~~~V~~I~~~~~~~~~~~v~~v~~~~g~~~~~~~aD-~VVlA~p~~~~~~Ll 289 (474)
T TIGR02732 230 EARGGKFHLRHKVREIKYEKSSDGSTRVTGLIMSKPEGKKVIKAD-AYVAACDVPGIKRLL 289 (474)
T ss_pred HHCCCEEECCCEEEEEEEecCCCCceeEEEEEEecCCcceEEECC-EEEECCChHHHHhhC
Confidence 346899999999999998742 22 4888887433212347785 799999988777765
No 344
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=88.08 E-value=0.42 Score=53.46 Aligned_cols=38 Identities=21% Similarity=0.288 Sum_probs=33.9
Q ss_pred CcceEEEECCCchhhhHHhhhhccCcccccccCCCCCcc
Q psy1205 60 RDYDFIVIGGGSSGAVVANRLSEMNTCNCPVTQPGPTLA 98 (868)
Q Consensus 60 ~~~d~~~~g~~~~~~~~a~~~~~~~~~~~LvlE~G~~LG 98 (868)
...+++|||+|.+|+.+|..|++. +.+|.|+|+.+.+|
T Consensus 17 ~~~~VvIIG~G~aGl~aA~~l~~~-g~~v~lie~~~~~g 54 (352)
T PRK12770 17 TGKKVAIIGAGPAGLAAAGYLACL-GYEVHVYDKLPEPG 54 (352)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHC-CCcEEEEeCCCCCC
Confidence 346899999999999999999975 78999999998866
No 345
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed
Probab=87.97 E-value=0.29 Score=60.63 Aligned_cols=34 Identities=21% Similarity=0.362 Sum_probs=31.0
Q ss_pred eEEEECCCchhhhHHhhhhcc-CcccccccCCCCC
Q psy1205 63 DFIVIGGGSSGAVVANRLSEM-NTCNCPVTQPGPT 96 (868)
Q Consensus 63 d~~~~g~~~~~~~~a~~~~~~-~~~~~LvlE~G~~ 96 (868)
+++|||||.+|+.+|..|+.. ++++|+|||+...
T Consensus 2 ~V~IIGaGpAGLaaAi~L~~~~~G~~V~vlEr~~~ 36 (765)
T PRK08255 2 RIVCIGGGPAGLYFALLMKLLDPAHEVTVVERNRP 36 (765)
T ss_pred eEEEECCCHHHHHHHHHHHHhCCCCeEEEEecCCC
Confidence 689999999999999999985 5799999999876
No 346
>COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]
Probab=87.92 E-value=1.2 Score=50.32 Aligned_cols=31 Identities=16% Similarity=0.149 Sum_probs=26.5
Q ss_pred ccccCCCcchhhhhhhhhcccccchhhhhhhhhhc
Q psy1205 331 AVTSGSAPLGGIQALRITRQDLVRWDQHLILALSC 365 (868)
Q Consensus 331 ~~~~g~~~~g~~~a~~~~~~g~~~~~~~~~~~~~~ 365 (868)
.+++|.|.+|+.+|+.|++.|. ++.++|+..
T Consensus 7 vvVIGgGi~Gls~A~~La~~G~----~V~vie~~~ 37 (387)
T COG0665 7 VVIIGGGIVGLSAAYYLAERGA----DVTVLEAGE 37 (387)
T ss_pred EEEECCcHHHHHHHHHHHHcCC----EEEEEecCc
Confidence 4689999999999999999997 566777666
No 347
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=87.78 E-value=0.42 Score=60.78 Aligned_cols=38 Identities=16% Similarity=0.217 Sum_probs=34.6
Q ss_pred CcceEEEECCCchhhhHHhhhhccCcccccccCCCCCcc
Q psy1205 60 RDYDFIVIGGGSSGAVVANRLSEMNTCNCPVTQPGPTLA 98 (868)
Q Consensus 60 ~~~d~~~~g~~~~~~~~a~~~~~~~~~~~LvlE~G~~LG 98 (868)
..++++|||||+||+.+|..|+.. +.+|+|+|++..+|
T Consensus 429 ~~~kVaIIG~GPAGLsaA~~La~~-G~~VtV~E~~~~~G 466 (1006)
T PRK12775 429 KLGKVAICGSGPAGLAAAADLVKY-GVDVTVYEALHVVG 466 (1006)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHc-CCcEEEEecCCCCc
Confidence 468999999999999999999986 78999999998876
No 348
>KOG2614|consensus
Probab=87.78 E-value=0.3 Score=54.02 Aligned_cols=34 Identities=21% Similarity=0.313 Sum_probs=30.3
Q ss_pred ceEEEECCCchhhhHHhhhhccCcccccccCCCCC
Q psy1205 62 YDFIVIGGGSSGAVVANRLSEMNTCNCPVTQPGPT 96 (868)
Q Consensus 62 ~d~~~~g~~~~~~~~a~~~~~~~~~~~LvlE~G~~ 96 (868)
-++||||||.+|++.|-.|... +++|+|+|+-.+
T Consensus 3 ~~VvIvGgGI~Gla~A~~l~r~-G~~v~VlE~~e~ 36 (420)
T KOG2614|consen 3 PKVVIVGGGIVGLATALALHRK-GIDVVVLESRED 36 (420)
T ss_pred CcEEEECCcHHHHHHHHHHHHc-CCeEEEEeeccc
Confidence 4799999999999999999985 899999998544
No 349
>COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning]
Probab=87.62 E-value=0.33 Score=55.48 Aligned_cols=35 Identities=31% Similarity=0.471 Sum_probs=28.9
Q ss_pred cceEEEECCCchhhhHHhhhhccCcccccccCCCCC
Q psy1205 61 DYDFIVIGGGSSGAVVANRLSEMNTCNCPVTQPGPT 96 (868)
Q Consensus 61 ~~d~~~~g~~~~~~~~a~~~~~~~~~~~LvlE~G~~ 96 (868)
.||+||||||-|||-+|..-+.. ++++|||=-..+
T Consensus 4 ~~DVIVIGgGHAG~EAA~AaARm-G~ktlLlT~~~d 38 (621)
T COG0445 4 EYDVIVIGGGHAGVEAALAAARM-GAKTLLLTLNLD 38 (621)
T ss_pred CCceEEECCCccchHHHHhhhcc-CCeEEEEEcCCC
Confidence 49999999999999999888765 788888655544
No 350
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=87.29 E-value=0.42 Score=58.16 Aligned_cols=38 Identities=24% Similarity=0.393 Sum_probs=34.5
Q ss_pred CcceEEEECCCchhhhHHhhhhccCcccccccCCCCCcc
Q psy1205 60 RDYDFIVIGGGSSGAVVANRLSEMNTCNCPVTQPGPTLA 98 (868)
Q Consensus 60 ~~~d~~~~g~~~~~~~~a~~~~~~~~~~~LvlE~G~~LG 98 (868)
...+++|||+|+||+.+|..|+.. +.+|+|+|+...+|
T Consensus 326 ~~~~VaIIGaGpAGLsaA~~L~~~-G~~V~V~E~~~~~G 363 (654)
T PRK12769 326 SDKRVAIIGAGPAGLACADVLARN-GVAVTVYDRHPEIG 363 (654)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHC-CCeEEEEecCCCCC
Confidence 467999999999999999999986 78999999998876
No 351
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=87.06 E-value=0.49 Score=58.60 Aligned_cols=39 Identities=21% Similarity=0.295 Sum_probs=34.3
Q ss_pred CCcceEEEECCCchhhhHHhhhhccCcccccccCCCCCcc
Q psy1205 59 DRDYDFIVIGGGSSGAVVANRLSEMNTCNCPVTQPGPTLA 98 (868)
Q Consensus 59 ~~~~d~~~~g~~~~~~~~a~~~~~~~~~~~LvlE~G~~LG 98 (868)
...+|++|||||+||+.+|..|+.. +.+|+|+|+.+.+|
T Consensus 429 ~~~~~V~IIGaGpAGl~aA~~l~~~-G~~V~v~e~~~~~G 467 (752)
T PRK12778 429 KNGKKVAVIGSGPAGLSFAGDLAKR-GYDVTVFEALHEIG 467 (752)
T ss_pred CCCCEEEEECcCHHHHHHHHHHHHC-CCeEEEEecCCCCC
Confidence 3568999999999999999999976 78999999976655
No 352
>TIGR03378 glycerol3P_GlpB glycerol-3-phosphate dehydrogenase, anaerobic, B subunit. Members of this protein family are the B subunit, product of the glpB gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.
Probab=87.06 E-value=1.2 Score=50.44 Aligned_cols=34 Identities=38% Similarity=0.740 Sum_probs=31.2
Q ss_pred ceEEEECCCchhhhHHhhhhccCcccccccCCCCC
Q psy1205 62 YDFIVIGGGSSGAVVANRLSEMNTCNCPVTQPGPT 96 (868)
Q Consensus 62 ~d~~~~g~~~~~~~~a~~~~~~~~~~~LvlE~G~~ 96 (868)
||+||||+|.+|+.+|.+|.+. +++|+|||+|..
T Consensus 1 ~Dv~IIGgG~aGl~~A~~l~~~-g~~v~lv~~~~~ 34 (419)
T TIGR03378 1 FDVIIIGGGLAGLSCALRLAEA-GKKCAIIAAGQS 34 (419)
T ss_pred CCEEEECchHHHHHHHHHHHHC-CCCEEEEeCCCc
Confidence 7999999999999999999876 789999999863
No 353
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=86.94 E-value=0.42 Score=59.81 Aligned_cols=39 Identities=21% Similarity=0.219 Sum_probs=34.9
Q ss_pred CCcceEEEECCCchhhhHHhhhhccCcccccccCCCCCcc
Q psy1205 59 DRDYDFIVIGGGSSGAVVANRLSEMNTCNCPVTQPGPTLA 98 (868)
Q Consensus 59 ~~~~d~~~~g~~~~~~~~a~~~~~~~~~~~LvlE~G~~LG 98 (868)
....+++|||||+||+.+|..|+.. +.+|.|+|+...+|
T Consensus 537 ~tgKkVaIIGgGPAGLsAA~~Lar~-G~~VtV~Ek~~~~G 575 (1019)
T PRK09853 537 GSRKKVAVIGAGPAGLAAAYFLARA-GHPVTVFEREENAG 575 (1019)
T ss_pred CCCCcEEEECCCHHHHHHHHHHHHc-CCeEEEEecccccC
Confidence 3567999999999999999999986 78999999988876
No 354
>TIGR01811 sdhA_Bsu succinate dehydrogenase or fumarate reductase, flavoprotein subunit, Bacillus subtilis subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in the low-GC Gram-positive bacteria and a few other lineages. This enzyme may act in a complete or partial TCA cycle, or act in the opposite direction as fumarate reductase. In some but not all species, succinate dehydrogenase and fumarate reductase may be encoded as separate isozymes.
Probab=86.93 E-value=0.28 Score=58.92 Aligned_cols=33 Identities=24% Similarity=0.373 Sum_probs=29.3
Q ss_pred EEEECCCchhhhHHhhhhccCcccccccCCCCCc
Q psy1205 64 FIVIGGGSSGAVVANRLSEMNTCNCPVTQPGPTL 97 (868)
Q Consensus 64 ~~~~g~~~~~~~~a~~~~~~~~~~~LvlE~G~~L 97 (868)
+||||+|.||+.+|.++++. +.+|+|||++..+
T Consensus 1 VlVVG~G~AGl~AAl~Aae~-G~~VilleK~~~~ 33 (603)
T TIGR01811 1 VIVVGTGLAGGMAAAKLAEL-GYHVKLFSYVDAP 33 (603)
T ss_pred CEEECccHHHHHHHHHHHHc-CCCEEEEEecCCC
Confidence 58999999999999999885 6899999999843
No 355
>PLN02487 zeta-carotene desaturase
Probab=86.82 E-value=0.64 Score=55.21 Aligned_cols=57 Identities=12% Similarity=0.135 Sum_probs=41.1
Q ss_pred CCCCeEEEccceEeEEEEcCC-CC--eEEEEEEEECCeEEEEEeccEEEEccCCcCchHHH
Q psy1205 515 SRNNLHILLNTTVTRVIVDPL-TK--AAIGVEFLTNGRLERLQAKNEVIVCAGAVDSPRIL 572 (868)
Q Consensus 515 ~~~nl~I~~~~~V~rIl~d~~-~~--~a~GV~~~~~g~~~~v~A~k~VILAAGai~SP~LL 572 (868)
++.|.+|++++.|++|+.+.+ ++ +++||++.+++....+.|+ .||+|++.-...+||
T Consensus 306 ~~~Gg~V~l~~~V~~I~~~~~~~g~~~v~gv~~~~~~~~~~~~aD-~VV~A~p~~~~~~Ll 365 (569)
T PLN02487 306 TDRGGRFHLRWGCREILYDKSPDGETYVTGLKVSKATEKEIVKAD-AYVAACDVPGIKRLL 365 (569)
T ss_pred HHcCCEEEeCCceEEEEEecCCCCceeEEEEEEecCCCceEEECC-EEEECCCHHHHHHhC
Confidence 457899999999999999742 22 5899988534444457775 799988866555544
No 356
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=86.79 E-value=0.51 Score=57.31 Aligned_cols=39 Identities=15% Similarity=0.234 Sum_probs=34.9
Q ss_pred CCcceEEEECCCchhhhHHhhhhccCcccccccCCCCCcc
Q psy1205 59 DRDYDFIVIGGGSSGAVVANRLSEMNTCNCPVTQPGPTLA 98 (868)
Q Consensus 59 ~~~~d~~~~g~~~~~~~~a~~~~~~~~~~~LvlE~G~~LG 98 (868)
...++++|||+|++|+.+|..|+.. +.+|.|+|+...+|
T Consensus 191 ~~~k~VaIIGaGpAGl~aA~~La~~-G~~Vtv~e~~~~~G 229 (652)
T PRK12814 191 KSGKKVAIIGAGPAGLTAAYYLLRK-GHDVTIFDANEQAG 229 (652)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHC-CCcEEEEecCCCCC
Confidence 3568999999999999999999986 78999999998876
No 357
>KOG2853|consensus
Probab=86.71 E-value=0.37 Score=51.62 Aligned_cols=37 Identities=35% Similarity=0.461 Sum_probs=32.2
Q ss_pred CcceEEEECCCchhhhHHhhhhc---cCcccccccCCCCC
Q psy1205 60 RDYDFIVIGGGSSGAVVANRLSE---MNTCNCPVTQPGPT 96 (868)
Q Consensus 60 ~~~d~~~~g~~~~~~~~a~~~~~---~~~~~~LvlE~G~~ 96 (868)
..-|++|||||-.|+.+|.-|.| +.+.+|+|+||-..
T Consensus 85 ~~~dVvIIGGG~~GsS~AfWLKer~rd~gl~VvVVErddt 124 (509)
T KOG2853|consen 85 YHCDVVIIGGGGSGSSTAFWLKERARDEGLNVVVVERDDT 124 (509)
T ss_pred cccCEEEECCCccchhhHHHHHHHhhcCCceEEEEeccCc
Confidence 46799999999999999999987 34589999999864
No 358
>PLN02328 lysine-specific histone demethylase 1 homolog
Probab=86.63 E-value=0.98 Score=55.44 Aligned_cols=38 Identities=24% Similarity=0.337 Sum_probs=34.2
Q ss_pred CcceEEEECCCchhhhHHhhhhccCcccccccCCCCCcc
Q psy1205 60 RDYDFIVIGGGSSGAVVANRLSEMNTCNCPVTQPGPTLA 98 (868)
Q Consensus 60 ~~~d~~~~g~~~~~~~~a~~~~~~~~~~~LvlE~G~~LG 98 (868)
...++||||+|.+|+.+|..|.+. +.+|+|+|+-..+|
T Consensus 237 ~~~~v~IiGaG~aGl~aA~~L~~~-g~~v~v~E~~~r~G 274 (808)
T PLN02328 237 EPANVVVVGAGLAGLVAARQLLSM-GFKVVVLEGRARPG 274 (808)
T ss_pred CCCCEEEECcCHHHHHHHHHHHHC-CCcEEEEeccccCC
Confidence 568999999999999999999875 78999999988776
No 359
>PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated
Probab=86.44 E-value=1.5 Score=50.17 Aligned_cols=34 Identities=29% Similarity=0.497 Sum_probs=31.4
Q ss_pred cceEEEECCCchhhhHHhhhhccCcccccccCCCC
Q psy1205 61 DYDFIVIGGGSSGAVVANRLSEMNTCNCPVTQPGP 95 (868)
Q Consensus 61 ~~d~~~~g~~~~~~~~a~~~~~~~~~~~LvlE~G~ 95 (868)
.||+||||+|.+|+.+|.+|++. +.+|+|||+|.
T Consensus 2 ~~DviIIG~G~aGl~aA~~la~~-g~~v~vi~~~~ 35 (422)
T PRK05329 2 KFDVLVIGGGLAGLTAALAAAEA-GKRVALVAKGQ 35 (422)
T ss_pred CCCEEEECccHHHHHHHHHHHHC-CCcEEEEECCC
Confidence 48999999999999999999986 78999999985
No 360
>COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion]
Probab=85.88 E-value=0.48 Score=53.21 Aligned_cols=37 Identities=27% Similarity=0.516 Sum_probs=34.4
Q ss_pred cceEEEECCCchhhhHHhhhhccCcccccccCCCCCcc
Q psy1205 61 DYDFIVIGGGSSGAVVANRLSEMNTCNCPVTQPGPTLA 98 (868)
Q Consensus 61 ~~d~~~~g~~~~~~~~a~~~~~~~~~~~LvlE~G~~LG 98 (868)
.-+.+|||||.||..+|-.|++. +++|.|+|.-++||
T Consensus 124 ~~svLVIGGGvAGitAAl~La~~-G~~v~LVEKepsiG 160 (622)
T COG1148 124 SKSVLVIGGGVAGITAALELADM-GFKVYLVEKEPSIG 160 (622)
T ss_pred ccceEEEcCcHHHHHHHHHHHHc-CCeEEEEecCCccc
Confidence 45789999999999999999987 89999999999988
No 361
>PLN02976 amine oxidase
Probab=85.65 E-value=0.51 Score=60.30 Aligned_cols=38 Identities=21% Similarity=0.375 Sum_probs=33.8
Q ss_pred CcceEEEECCCchhhhHHhhhhccCcccccccCCCCCcc
Q psy1205 60 RDYDFIVIGGGSSGAVVANRLSEMNTCNCPVTQPGPTLA 98 (868)
Q Consensus 60 ~~~d~~~~g~~~~~~~~a~~~~~~~~~~~LvlE~G~~LG 98 (868)
..+|++|||+|.+|+.+|.+|+.. +.+|+|||+...+|
T Consensus 692 ~~~dV~IIGAG~AGLaAA~~L~~~-G~~V~VlEa~~~vG 729 (1713)
T PLN02976 692 DRKKIIVVGAGPAGLTAARHLQRQ-GFSVTVLEARSRIG 729 (1713)
T ss_pred CCCcEEEECchHHHHHHHHHHHHC-CCcEEEEeeccCCC
Confidence 468999999999999999999975 68999999977655
No 362
>KOG1399|consensus
Probab=85.43 E-value=0.49 Score=54.20 Aligned_cols=37 Identities=24% Similarity=0.310 Sum_probs=33.8
Q ss_pred cceEEEECCCchhhhHHhhhhccCcccccccCCCCCcc
Q psy1205 61 DYDFIVIGGGSSGAVVANRLSEMNTCNCPVTQPGPTLA 98 (868)
Q Consensus 61 ~~d~~~~g~~~~~~~~a~~~~~~~~~~~LvlE~G~~LG 98 (868)
.-++.|||+|+||++.|.-|.+. +..|.++||..+.|
T Consensus 6 ~~~vaIIGAG~sGL~~ar~l~~~-g~~v~vfEr~~~iG 42 (448)
T KOG1399|consen 6 SKDVAVIGAGPAGLAAARELLRE-GHEVVVFERTDDIG 42 (448)
T ss_pred CCceEEECcchHHHHHHHHHHHC-CCCceEEEecCCcc
Confidence 35899999999999999999876 89999999999977
No 363
>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []. Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....
Probab=85.30 E-value=0.4 Score=56.53 Aligned_cols=67 Identities=28% Similarity=0.316 Sum_probs=40.9
Q ss_pred hhhhhhhccCCCCe--EEEccceEeEEEEcCCCCe--EEEEEEEECCeEEEEEeccEEEEccCCcCchHHHH
Q psy1205 506 SKAFLRPIISRNNL--HILLNTTVTRVIVDPLTKA--AIGVEFLTNGRLERLQAKNEVIVCAGAVDSPRILL 573 (868)
Q Consensus 506 ~~~~L~~~~~~~nl--~I~~~~~V~rIl~d~~~~~--a~GV~~~~~g~~~~v~A~k~VILAAGai~SP~LLl 573 (868)
...||..-+++-+| +|..+++|++|...++... -.-|....+|+..+-.-+ .||+|.|.+..|.+=.
T Consensus 86 v~~Yl~~Ya~~f~L~~~I~fnt~V~~v~~~~d~~~~~~W~V~~~~~g~~~~~~fD-~VvvatG~~~~P~~P~ 156 (531)
T PF00743_consen 86 VLEYLESYAEHFGLRKHIRFNTEVVSVERDPDFSATGKWEVTTENDGKEETEEFD-AVVVATGHFSKPNIPE 156 (531)
T ss_dssp HHHHHHHHHHHTTGGGGEETSEEEEEEEEETTTT-ETEEEEEETTTTEEEEEEEC-EEEEEE-SSSCESB--
T ss_pred HHHHHHHHHhhhCCcceEEEccEEeEeeeccccCCCceEEEEeecCCeEEEEEeC-eEEEcCCCcCCCCCCh
Confidence 44566655554454 6999999999987643211 122333335665544444 6999999999997643
No 364
>KOG2404|consensus
Probab=85.24 E-value=0.56 Score=49.93 Aligned_cols=41 Identities=22% Similarity=0.386 Sum_probs=34.5
Q ss_pred eEEEECCCchhhhHHhhhhccCcccccccCCCCCcc-------ccchhh
Q psy1205 63 DFIVIGGGSSGAVVANRLSEMNTCNCPVTQPGPTLA-------STCGGS 104 (868)
Q Consensus 63 d~~~~g~~~~~~~~a~~~~~~~~~~~LvlE~G~~LG-------s~iN~~ 104 (868)
-+||||||.||+.+++++-...+. |+|||.-++.| |-||+.
T Consensus 11 pvvVIGgGLAGLsasn~iin~gg~-V~llek~~s~GGNSiKAsSGINgA 58 (477)
T KOG2404|consen 11 PVVVIGGGLAGLSASNDIINKGGI-VILLEKAGSIGGNSIKASSGINGA 58 (477)
T ss_pred cEEEECCchhhhhhHHHHHhcCCe-EEEEeccCCcCCcceecccCcCCC
Confidence 389999999999999999876554 99999998877 667754
No 365
>PRK09897 hypothetical protein; Provisional
Probab=85.07 E-value=0.58 Score=55.03 Aligned_cols=37 Identities=11% Similarity=0.207 Sum_probs=31.9
Q ss_pred ceEEEECCCchhhhHHhhhhcc-CcccccccCCCCCcc
Q psy1205 62 YDFIVIGGGSSGAVVANRLSEM-NTCNCPVTQPGPTLA 98 (868)
Q Consensus 62 ~d~~~~g~~~~~~~~a~~~~~~-~~~~~LvlE~G~~LG 98 (868)
++++|||||++|..+|.+|.+. ...+|.|+|++..+|
T Consensus 2 ~~IAIIGgGp~Gl~~a~~L~~~~~~l~V~lfEp~~~~G 39 (534)
T PRK09897 2 KKIAIVGAGPTGIYTFFSLLQQQTPLSISIFEQADEAG 39 (534)
T ss_pred CeEEEECCcHHHHHHHHHHHhcCCCCcEEEEecCCCCC
Confidence 4799999999999999999763 347999999988766
No 366
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=84.99 E-value=0.82 Score=53.22 Aligned_cols=38 Identities=24% Similarity=0.355 Sum_probs=34.2
Q ss_pred CcceEEEECCCchhhhHHhhhhccCcccccccCCCCCcc
Q psy1205 60 RDYDFIVIGGGSSGAVVANRLSEMNTCNCPVTQPGPTLA 98 (868)
Q Consensus 60 ~~~d~~~~g~~~~~~~~a~~~~~~~~~~~LvlE~G~~LG 98 (868)
..++++|||+|++|+.+|..|+.. +.+|.|+|+.+.+|
T Consensus 140 ~~~~V~IIG~GpaGl~aA~~l~~~-G~~V~i~e~~~~~g 177 (467)
T TIGR01318 140 TGKRVAVIGAGPAGLACADILARA-GVQVVVFDRHPEIG 177 (467)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHc-CCeEEEEecCCCCC
Confidence 568999999999999999999875 78999999998876
No 367
>TIGR00136 gidA glucose-inhibited division protein A. GidA, the longer of two forms of GidA-related proteins, appears to be present in all complete eubacterial genomes so far, as well as Saccharomyces cerevisiae. A subset of these organisms have a closely related protein. GidA is absent in the Archaea. It appears to act with MnmE, in an alpha2/beta2 heterotetramer, in the 5-carboxymethylaminomethyl modification of uridine 34 in certain tRNAs. The shorter, related protein, previously called gid or gidA(S), is now called TrmFO (see model TIGR00137).
Probab=84.51 E-value=2.1 Score=50.84 Aligned_cols=54 Identities=24% Similarity=0.370 Sum_probs=39.1
Q ss_pred cCCCCeEEEccceEeEEEEcCCCCeEEEEEEEECCeEEEEEeccEEEEccCCcCchHHHH
Q psy1205 514 ISRNNLHILLNTTVTRVIVDPLTKAAIGVEFLTNGRLERLQAKNEVIVCAGAVDSPRILL 573 (868)
Q Consensus 514 ~~~~nl~I~~~~~V~rIl~d~~~~~a~GV~~~~~g~~~~v~A~k~VILAAGai~SP~LLl 573 (868)
.+.+|++++.+ .|+.++.+ +++++.||+.. +|. .+.|+ .||+|+|++-..++..
T Consensus 107 e~~pgV~Ile~-~Vv~li~e-~~g~V~GV~t~-~G~--~I~Ad-~VILATGtfL~g~ihi 160 (617)
T TIGR00136 107 ENQPNLSLFQG-EVEDLILE-DNDEIKGVVTQ-DGL--KFRAK-AVIITTGTFLRGKIHI 160 (617)
T ss_pred HcCCCcEEEEe-EEEEEEEe-cCCcEEEEEEC-CCC--EEECC-EEEEccCcccCCCEEe
Confidence 45568999754 78888765 24688898764 343 67885 8999999997665555
No 368
>KOG0042|consensus
Probab=84.38 E-value=0.47 Score=53.96 Aligned_cols=36 Identities=25% Similarity=0.518 Sum_probs=30.0
Q ss_pred CcceEEEECCCchhhhHHhhhhccCcccccccCCCCC
Q psy1205 60 RDYDFIVIGGGSSGAVVANRLSEMNTCNCPVTQPGPT 96 (868)
Q Consensus 60 ~~~d~~~~g~~~~~~~~a~~~~~~~~~~~LvlE~G~~ 96 (868)
.+||++|||||++|.=+|---+. .++||-|+|+|..
T Consensus 66 ~~fDVLIIGGGAtGaGcALDA~T-RGLktaLVE~~DF 101 (680)
T KOG0042|consen 66 HEFDVLIIGGGATGAGCALDAAT-RGLKTALVEAGDF 101 (680)
T ss_pred CcccEEEECCCccCcceeehhhc-ccceeEEEecccc
Confidence 46999999999998777755444 4899999999986
No 369
>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]
Probab=84.08 E-value=3.2 Score=47.89 Aligned_cols=32 Identities=13% Similarity=0.136 Sum_probs=28.0
Q ss_pred ccccCCCcchhhhhhhhhcccccchhhhhhhhhhc
Q psy1205 331 AVTSGSAPLGGIQALRITRQDLVRWDQHLILALSC 365 (868)
Q Consensus 331 ~~~~g~~~~g~~~a~~~~~~g~~~~~~~~~~~~~~ 365 (868)
.+++|.|.+|.++|.+|.++|... +.+||+.+
T Consensus 11 v~IIGaG~sGlaaa~~L~~~g~~~---~~i~Ek~~ 42 (443)
T COG2072 11 VAIIGAGQSGLAAAYALKQAGVPD---FVIFEKRD 42 (443)
T ss_pred EEEECCCHHHHHHHHHHHHcCCCc---EEEEEccC
Confidence 467999999999999999999843 88888887
No 370
>COG0029 NadB Aspartate oxidase [Coenzyme metabolism]
Probab=83.65 E-value=0.63 Score=52.76 Aligned_cols=32 Identities=31% Similarity=0.513 Sum_probs=29.5
Q ss_pred eEEEECCCchhhhHHhhhhccCcccccccCCCCC
Q psy1205 63 DFIVIGGGSSGAVVANRLSEMNTCNCPVTQPGPT 96 (868)
Q Consensus 63 d~~~~g~~~~~~~~a~~~~~~~~~~~LvlE~G~~ 96 (868)
|++|||+|.|||.+|-+|.+. .+|+||-++..
T Consensus 9 dV~IiGsG~AGL~~AL~L~~~--~~V~vltk~~~ 40 (518)
T COG0029 9 DVLIIGSGLAGLTAALSLAPS--FRVTVLTKGPL 40 (518)
T ss_pred cEEEECCcHHHHHHHHhCCCC--CcEEEEeCCCC
Confidence 899999999999999999984 79999998864
No 371
>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G ....
Probab=83.48 E-value=0.27 Score=40.61 Aligned_cols=29 Identities=10% Similarity=0.092 Sum_probs=25.2
Q ss_pred ccCCCcchhhhhhhhhcccccchhhhhhhhhhc
Q psy1205 333 TSGSAPLGGIQALRITRQDLVRWDQHLILALSC 365 (868)
Q Consensus 333 ~~g~~~~g~~~a~~~~~~g~~~~~~~~~~~~~~ 365 (868)
++|+|.+|+++|.+|+++|. ++.++|+.+
T Consensus 1 IiGaG~sGl~aA~~L~~~g~----~v~v~E~~~ 29 (68)
T PF13450_consen 1 IIGAGISGLAAAYYLAKAGY----RVTVFEKND 29 (68)
T ss_dssp EES-SHHHHHHHHHHHHTTS----EEEEEESSS
T ss_pred CEeeCHHHHHHHHHHHHCCC----cEEEEecCc
Confidence 47999999999999999987 788888888
No 372
>TIGR03862 flavo_PP4765 uncharacterized flavoprotein, PP_4765 family. This model describes a sharply distinctive clade of proteins within the larger family of flavoproteins described by Pfam model pfam03486 and TIGRFAMs model TIGR00275. The function is unknown.
Probab=83.41 E-value=3.4 Score=46.34 Aligned_cols=88 Identities=9% Similarity=0.081 Sum_probs=54.1
Q ss_pred HHHHHHHHHCCCCCC-CCCCCCcceeeeeeccCCCCcccchhhhhhhhccCCCCeEEEccceEeEEEEcCCCCeEEEEEE
Q psy1205 466 HSILQGAMELGMPVR-DLNGVSHTGFMIAQTTTRNGSRLSTSKAFLRPIISRNNLHILLNTTVTRVIVDPLTKAAIGVEF 544 (868)
Q Consensus 466 ~~~~~a~~~lG~~~~-~~n~~~~~G~~~~~~~~~~g~R~s~~~~~L~~~~~~~nl~I~~~~~V~rIl~d~~~~~a~GV~~ 544 (868)
.++++-++++|++.. +-+ |.-++.. .+.++...-|....++.|++|++++.|+.| + ++. .+|..
T Consensus 57 ~d~~~fF~~~Gi~~~~e~~-----grvfP~S-----~~A~sVv~~L~~~l~~~gV~i~~~~~V~~i--~--~~~-~~v~~ 121 (376)
T TIGR03862 57 VALQDWARGLGIETFVGSS-----GRVFPVE-----MKAAPLLRAWLKRLAEQGVQFHTRHRWIGW--Q--GGT-LRFET 121 (376)
T ss_pred HHHHHHHHHCCCceEECCC-----CEECCCC-----CCHHHHHHHHHHHHHHCCCEEEeCCEEEEE--e--CCc-EEEEE
Confidence 456667788999762 222 2111111 223344444555667789999999999998 3 222 34443
Q ss_pred EECCeEEEEEeccEEEEccCCcCchHH
Q psy1205 545 LTNGRLERLQAKNEVIVCAGAVDSPRI 571 (868)
Q Consensus 545 ~~~g~~~~v~A~k~VILAAGai~SP~L 571 (868)
..+ ...++|+ .||||+|+.-.|++
T Consensus 122 ~~~--~~~~~a~-~vIlAtGG~s~p~~ 145 (376)
T TIGR03862 122 PDG--QSTIEAD-AVVLALGGASWSQL 145 (376)
T ss_pred CCC--ceEEecC-EEEEcCCCcccccc
Confidence 222 2357886 79999999888864
No 373
>PRK13339 malate:quinone oxidoreductase; Reviewed
Probab=83.30 E-value=4.5 Score=47.25 Aligned_cols=68 Identities=21% Similarity=0.164 Sum_probs=45.3
Q ss_pred hhhhhhccCCCCeEEEccceEeEEEEcCCCCeEEEEEEE--ECCeEEEEEeccEEEEccCCcCchHHHHhcCCC
Q psy1205 507 KAFLRPIISRNNLHILLNTTVTRVIVDPLTKAAIGVEFL--TNGRLERLQAKNEVIVCAGAVDSPRILLLSGIG 578 (868)
Q Consensus 507 ~~~L~~~~~~~nl~I~~~~~V~rIl~d~~~~~a~GV~~~--~~g~~~~v~A~k~VILAAGai~SP~LLl~SGIG 578 (868)
.+++..+.+..+++|++++.|+.|..+++++ . -|.+. ..++..+++|+ .||+|||+ .+-+|+..+|+.
T Consensus 188 ~aL~~~l~~~~Gv~i~~~~~V~~I~~~~d~~-w-~v~v~~t~~g~~~~i~Ad-~VV~AAGa-wS~~La~~~Gi~ 257 (497)
T PRK13339 188 RKLAKHLESHPNAQVKYNHEVVDLERLSDGG-W-EVTVKDRNTGEKREQVAD-YVFIGAGG-GAIPLLQKSGIP 257 (497)
T ss_pred HHHHHHHHhCCCcEEEeCCEEEEEEECCCCC-E-EEEEEecCCCceEEEEcC-EEEECCCc-chHHHHHHcCCC
Confidence 3455444455689999999999997752222 2 23332 24434468885 79999997 567888888753
No 374
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=83.21 E-value=0.81 Score=57.70 Aligned_cols=38 Identities=24% Similarity=0.200 Sum_probs=34.3
Q ss_pred CcceEEEECCCchhhhHHhhhhccCcccccccCCCCCcc
Q psy1205 60 RDYDFIVIGGGSSGAVVANRLSEMNTCNCPVTQPGPTLA 98 (868)
Q Consensus 60 ~~~d~~~~g~~~~~~~~a~~~~~~~~~~~LvlE~G~~LG 98 (868)
...+++|||+|+||+.+|..|+.. +.+|.|+|+...+|
T Consensus 305 ~gkkVaVIGsGPAGLsaA~~Lar~-G~~VtVfE~~~~~G 342 (944)
T PRK12779 305 VKPPIAVVGSGPSGLINAYLLAVE-GFPVTVFEAFHDLG 342 (944)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHC-CCeEEEEeeCCCCC
Confidence 457899999999999999999975 78999999998776
No 375
>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.
Probab=83.13 E-value=0.89 Score=53.19 Aligned_cols=38 Identities=18% Similarity=0.291 Sum_probs=33.9
Q ss_pred CcceEEEECCCchhhhHHhhhhccCcccccccCCCCCcc
Q psy1205 60 RDYDFIVIGGGSSGAVVANRLSEMNTCNCPVTQPGPTLA 98 (868)
Q Consensus 60 ~~~d~~~~g~~~~~~~~a~~~~~~~~~~~LvlE~G~~LG 98 (868)
..++++|||+|.+|+.+|..|++. +.+|.|+|+...+|
T Consensus 142 ~~~~V~IIGaG~aGl~aA~~L~~~-g~~V~v~e~~~~~g 179 (485)
T TIGR01317 142 TGKKVAVVGSGPAGLAAADQLNRA-GHTVTVFEREDRCG 179 (485)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHc-CCeEEEEecCCCCC
Confidence 457999999999999999999975 68999999998765
No 376
>PLN03000 amine oxidase
Probab=83.06 E-value=0.74 Score=56.62 Aligned_cols=38 Identities=18% Similarity=0.301 Sum_probs=34.1
Q ss_pred CcceEEEECCCchhhhHHhhhhccCcccccccCCCCCcc
Q psy1205 60 RDYDFIVIGGGSSGAVVANRLSEMNTCNCPVTQPGPTLA 98 (868)
Q Consensus 60 ~~~d~~~~g~~~~~~~~a~~~~~~~~~~~LvlE~G~~LG 98 (868)
...|+||||+|.+|+.+|..|.+. +++|+|+|+....|
T Consensus 183 ~~~~VvIIGaG~aGL~aA~~L~~~-G~~V~VlE~~~riG 220 (881)
T PLN03000 183 SKSSVVIVGAGLSGLAAARQLMRF-GFKVTVLEGRKRPG 220 (881)
T ss_pred CCCCEEEECccHHHHHHHHHHHHC-CCcEEEEEccCcCC
Confidence 458999999999999999999875 68999999998866
No 377
>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B.
Probab=82.70 E-value=0.45 Score=52.84 Aligned_cols=36 Identities=28% Similarity=0.307 Sum_probs=28.1
Q ss_pred cceEEEECCCchhhhHHhhhhccCcccccccCCCCC
Q psy1205 61 DYDFIVIGGGSSGAVVANRLSEMNTCNCPVTQPGPT 96 (868)
Q Consensus 61 ~~d~~~~g~~~~~~~~a~~~~~~~~~~~LvlE~G~~ 96 (868)
.||+|+||.|++++.+|..|.+.+..+++.|||-+.
T Consensus 2 ~~D~igIG~GP~nLslA~~l~~~~~~~~~f~e~~~~ 37 (341)
T PF13434_consen 2 IYDLIGIGFGPFNLSLAALLEEHGDLKALFLERRPS 37 (341)
T ss_dssp EESEEEE--SHHHHHHHHHHHHHH---EEEEES-SS
T ss_pred ceeEEEEeeCHHHHHHHHHhhhcCCCCEEEEecCCC
Confidence 489999999999999999999987899999998876
No 378
>TIGR02485 CobZ_N-term precorrin 3B synthase CobZ. CobZ is essential for cobalamin biosynthesis (by knockout of the R. capsulatus gene ) and is complemented by the characterized precorrin 3B synthase CobG. The enzyme has been shown to contain flavin, heme and Fe-S cluster cofactors and is believed to require dioxygen as a substrate. This model identifies the N-terminal portion of the R. capsulatus gene which, in other species exists as a separate protein. The C-terminal portion is homologous to the 2-component signal transduction system protein CitB (TIGR02484).
Probab=82.60 E-value=0.5 Score=54.43 Aligned_cols=62 Identities=10% Similarity=0.019 Sum_probs=41.0
Q ss_pred CcccccccccccCCCCCCCccCCCCcEeccCCcEEecc----CCCCC-CCCccchHHHHHHHHHHHHHHHHH
Q psy1205 792 AENHQAGSCKMGPASDPSAVVSPELKVHGVDRLRVVDC----SIMPA-VTSGNTNAPAIMIAEKASDLIKQQ 858 (868)
Q Consensus 792 t~~H~~GTcrMG~~~dp~~VVD~~lrV~Gv~nL~V~Da----Sv~P~-~~~~NP~~Ti~alAeraAd~I~~~ 858 (868)
..+|-+|+.+.- .+ .-|+|.++++ ++|||.+.. +++-. -.++|-....+..+..+++.+.+.
T Consensus 363 ~~~~T~GGl~id--~~-~~Vl~~~g~~--I~GLYAaG~~~~g~~~g~~y~~G~~~~~a~~~GriAg~~aa~~ 429 (432)
T TIGR02485 363 GITFTRYGLVVD--AT-ARVRLNDAVA--PDNLFAAGTNMAGNVLGQGYLAGAGLTIAAVFGRIAGRAAARL 429 (432)
T ss_pred ccceeccceEEC--CC-ceEECCCCCC--CCCeeecccccccccccCCCccchhhHHHHHHHHHHHHHHHHh
Confidence 455667766653 11 2588888775 599999983 23321 234666777788888999888765
No 379
>KOG2311|consensus
Probab=82.51 E-value=1 Score=50.57 Aligned_cols=33 Identities=27% Similarity=0.518 Sum_probs=25.3
Q ss_pred CCCcceEEEECCCchhhhHHhhhhccCcccccc
Q psy1205 58 PDRDYDFIVIGGGSSGAVVANRLSEMNTCNCPV 90 (868)
Q Consensus 58 ~~~~~d~~~~g~~~~~~~~a~~~~~~~~~~~Lv 90 (868)
.+..||+||||||-|||-.|+.-+....-++||
T Consensus 25 ~~~~~dVvVIGgGHAG~EAAaAaaR~Ga~TlLl 57 (679)
T KOG2311|consen 25 STSTYDVVVIGGGHAGCEAAAAAARLGARTLLL 57 (679)
T ss_pred CCCcccEEEECCCccchHHHHHHHhcCCceEEe
Confidence 357899999999999998887777653334444
No 380
>KOG4254|consensus
Probab=82.42 E-value=0.86 Score=50.84 Aligned_cols=59 Identities=24% Similarity=0.334 Sum_probs=45.6
Q ss_pred hhhhccCCCCeEEEccceEeEEEEcCCCCeEEEEEEEECCeEEEEEeccEEEEccCCcCchHHHH
Q psy1205 509 FLRPIISRNNLHILLNTTVTRVIVDPLTKAAIGVEFLTNGRLERLQAKNEVIVCAGAVDSPRILL 573 (868)
Q Consensus 509 ~L~~~~~~~nl~I~~~~~V~rIl~d~~~~~a~GV~~~~~g~~~~v~A~k~VILAAGai~SP~LLl 573 (868)
.+.+.+++.+.+|.|+++|.+|++| +++|.||.+. +|++ +++ |.||--|+-+.|=.=|+
T Consensus 269 aia~~~~~~GaeI~tka~Vq~Illd--~gka~GV~L~-dG~e--v~s-k~VvSNAt~~~Tf~kLl 327 (561)
T KOG4254|consen 269 AIAEGAKRAGAEIFTKATVQSILLD--SGKAVGVRLA-DGTE--VRS-KIVVSNATPWDTFEKLL 327 (561)
T ss_pred HHHHHHHhccceeeehhhhhheecc--CCeEEEEEec-CCcE--EEe-eeeecCCchHHHHHHhC
Confidence 3556678899999999999999999 6999999875 4433 455 57888888877764444
No 381
>KOG2755|consensus
Probab=81.85 E-value=0.79 Score=47.57 Aligned_cols=33 Identities=27% Similarity=0.512 Sum_probs=29.1
Q ss_pred EEEECCCchhhhHHhhhhc-cCcccccccCCCCC
Q psy1205 64 FIVIGGGSSGAVVANRLSE-MNTCNCPVTQPGPT 96 (868)
Q Consensus 64 ~~~~g~~~~~~~~a~~~~~-~~~~~~LvlE~G~~ 96 (868)
|||||||.||-..|..|+. .|+..||||-+.+.
T Consensus 2 fivvgggiagvscaeqla~~~psa~illitass~ 35 (334)
T KOG2755|consen 2 FIVVGGGIAGVSCAEQLAQLEPSAEILLITASSF 35 (334)
T ss_pred eEEEcCccccccHHHHHHhhCCCCcEEEEeccHH
Confidence 8999999999999999997 57789999877654
No 382
>KOG3851|consensus
Probab=81.84 E-value=1 Score=48.10 Aligned_cols=35 Identities=23% Similarity=0.578 Sum_probs=28.0
Q ss_pred CcceEEEECCCchhhhHHhhhhcc-CcccccccCCC
Q psy1205 60 RDYDFIVIGGGSSGAVVANRLSEM-NTCNCPVTQPG 94 (868)
Q Consensus 60 ~~~d~~~~g~~~~~~~~a~~~~~~-~~~~~LvlE~G 94 (868)
.+|-++|||||++||.+|.+++.. +.-+|-+||.-
T Consensus 38 ~h~kvLVvGGGsgGi~~A~k~~rkl~~g~vgIvep~ 73 (446)
T KOG3851|consen 38 KHFKVLVVGGGSGGIGMAAKFYRKLGSGSVGIVEPA 73 (446)
T ss_pred cceEEEEEcCCcchhHHHHHHHhhcCCCceEEecch
Confidence 579999999999999999999863 33467777643
No 383
>KOG1439|consensus
Probab=81.83 E-value=0.8 Score=50.40 Aligned_cols=39 Identities=23% Similarity=0.336 Sum_probs=35.4
Q ss_pred CCcceEEEECCCchhhhHHhhhhccCcccccccCCCCCcc
Q psy1205 59 DRDYDFIVIGGGSSGAVVANRLSEMNTCNCPVTQPGPTLA 98 (868)
Q Consensus 59 ~~~~d~~~~g~~~~~~~~a~~~~~~~~~~~LvlE~G~~LG 98 (868)
+++||+||+|.|..=|+++.+||-+ +.+||.|+|-+.-|
T Consensus 2 deeyDvivlGTgl~ecilS~~Ls~~-gkkVLhiDrN~yYG 40 (440)
T KOG1439|consen 2 DEEYDVIVLGTGLTECILSGALSVD-GKKVLHIDRNDYYG 40 (440)
T ss_pred CCceeEEEEcCCchhheeeeeeeec-CcEEEEEeCCCCCC
Confidence 3569999999999999999999976 67899999999877
No 384
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=81.41 E-value=1.3 Score=53.69 Aligned_cols=38 Identities=26% Similarity=0.383 Sum_probs=34.4
Q ss_pred CcceEEEECCCchhhhHHhhhhccCcccccccCCCCCcc
Q psy1205 60 RDYDFIVIGGGSSGAVVANRLSEMNTCNCPVTQPGPTLA 98 (868)
Q Consensus 60 ~~~d~~~~g~~~~~~~~a~~~~~~~~~~~LvlE~G~~LG 98 (868)
...+++|||+|++|+.+|..|+.. +.+|.|+|+.+.+|
T Consensus 309 ~~kkVaIIG~GpaGl~aA~~L~~~-G~~Vtv~e~~~~~G 346 (639)
T PRK12809 309 RSEKVAVIGAGPAGLGCADILARA-GVQVDVFDRHPEIG 346 (639)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHc-CCcEEEEeCCCCCC
Confidence 467899999999999999999975 78999999999877
No 385
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=80.78 E-value=1.2 Score=51.06 Aligned_cols=39 Identities=23% Similarity=0.332 Sum_probs=32.4
Q ss_pred CCCCcceEEEECCCchhhhHHhhhhccCcccccccCCCCC
Q psy1205 57 FPDRDYDFIVIGGGSSGAVVANRLSEMNTCNCPVTQPGPT 96 (868)
Q Consensus 57 ~~~~~~d~~~~g~~~~~~~~a~~~~~~~~~~~LvlE~G~~ 96 (868)
...+..+++|||||.||..+|.+|.. .+.+|.|||+-..
T Consensus 6 ~~~~~~~vVIvGgG~aGl~~a~~L~~-~~~~ItlI~~~~~ 44 (424)
T PTZ00318 6 ARLKKPNVVVLGTGWAGAYFVRNLDP-KKYNITVISPRNH 44 (424)
T ss_pred cCCCCCeEEEECCCHHHHHHHHHhCc-CCCeEEEEcCCCC
Confidence 34456799999999999999999964 3679999998775
No 386
>PRK06184 hypothetical protein; Provisional
Probab=80.48 E-value=5.4 Score=46.92 Aligned_cols=34 Identities=15% Similarity=0.290 Sum_probs=29.5
Q ss_pred cCCccccCCCcchhhhhhhhhcccccchhhhhhhhhhc
Q psy1205 328 IMPAVTSGSAPLGGIQALRITRQDLVRWDQHLILALSC 365 (868)
Q Consensus 328 ~~p~~~~g~~~~g~~~a~~~~~~g~~~~~~~~~~~~~~ 365 (868)
.++.+++|.|.+|+++|+.|+++|+ ++.++|+.+
T Consensus 3 ~~dVlIVGaGpaGl~~A~~La~~Gi----~v~viE~~~ 36 (502)
T PRK06184 3 TTDVLIVGAGPTGLTLAIELARRGV----SFRLIEKAP 36 (502)
T ss_pred CCcEEEECCCHHHHHHHHHHHHCCC----cEEEEeCCC
Confidence 3567899999999999999999998 688888765
No 387
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=80.37 E-value=1.2 Score=50.64 Aligned_cols=61 Identities=21% Similarity=0.347 Sum_probs=40.8
Q ss_pred hhhhccCCCCeEEEccceEeEEEEcCCCCeEEEEEEEECCeEEEEEeccEEEEccCCcCchHHHHhcCC
Q psy1205 509 FLRPIISRNNLHILLNTTVTRVIVDPLTKAAIGVEFLTNGRLERLQAKNEVIVCAGAVDSPRILLLSGI 577 (868)
Q Consensus 509 ~L~~~~~~~nl~I~~~~~V~rIl~d~~~~~a~GV~~~~~g~~~~v~A~k~VILAAGai~SP~LLl~SGI 577 (868)
++....++.++++++++.|+++.-+ +. ..|+. .+|+ ++.++ .||+++|..-.+.|+..+|+
T Consensus 191 ~l~~~l~~~GV~i~~~~~V~~i~~~---~~-~~v~l-~~g~--~i~aD-~Vv~a~G~~pn~~l~~~~gl 251 (396)
T PRK09754 191 YLLQRHQQAGVRILLNNAIEHVVDG---EK-VELTL-QSGE--TLQAD-VVIYGIGISANDQLAREANL 251 (396)
T ss_pred HHHHHHHHCCCEEEeCCeeEEEEcC---CE-EEEEE-CCCC--EEECC-EEEECCCCChhhHHHHhcCC
Confidence 3333345568999999999998542 22 22332 3454 46775 79999998877777777765
No 388
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=80.25 E-value=1.1 Score=51.68 Aligned_cols=36 Identities=17% Similarity=0.330 Sum_probs=31.6
Q ss_pred eEEEECCCchhhhHHhhhhc-cCcccccccCCCCCcc
Q psy1205 63 DFIVIGGGSSGAVVANRLSE-MNTCNCPVTQPGPTLA 98 (868)
Q Consensus 63 d~~~~g~~~~~~~~a~~~~~-~~~~~~LvlE~G~~LG 98 (868)
.++|||||.||..+|.+|.+ .++.+|+|||+...++
T Consensus 3 ~VVIIGgG~aG~~aA~~l~~~~~~~~I~li~~~~~~~ 39 (438)
T PRK13512 3 KIIVVGAVAGGATCASQIRRLDKESDIIIFEKDRDMS 39 (438)
T ss_pred eEEEECCcHHHHHHHHHHHhhCCCCCEEEEECCCCcc
Confidence 58999999999999999976 4578999999998754
No 389
>PTZ00188 adrenodoxin reductase; Provisional
Probab=80.21 E-value=1.1 Score=51.73 Aligned_cols=38 Identities=16% Similarity=0.246 Sum_probs=33.0
Q ss_pred cceEEEECCCchhhhHHhhhhccCcccccccCCCCCcc
Q psy1205 61 DYDFIVIGGGSSGAVVANRLSEMNTCNCPVTQPGPTLA 98 (868)
Q Consensus 61 ~~d~~~~g~~~~~~~~a~~~~~~~~~~~LvlE~G~~LG 98 (868)
..=+.|||+|+||+.+|.+|....+.+|-|+|+-+.+|
T Consensus 39 ~krVAIVGaGPAGlyaA~~Ll~~~g~~VtlfEk~p~pg 76 (506)
T PTZ00188 39 PFKVGIIGAGPSALYCCKHLLKHERVKVDIFEKLPNPY 76 (506)
T ss_pred CCEEEEECCcHHHHHHHHHHHHhcCCeEEEEecCCCCc
Confidence 34599999999999999988655578999999999977
No 390
>KOG1399|consensus
Probab=79.01 E-value=3.5 Score=47.36 Aligned_cols=69 Identities=33% Similarity=0.417 Sum_probs=46.9
Q ss_pred hhhhhhccCCCCe--EEEccceEeEEEEcCCCCeEEEEEEEECCe-EEEEEeccEEEEccCCcCchHHHHhcCCC
Q psy1205 507 KAFLRPIISRNNL--HILLNTTVTRVIVDPLTKAAIGVEFLTNGR-LERLQAKNEVIVCAGAVDSPRILLLSGIG 578 (868)
Q Consensus 507 ~~~L~~~~~~~nl--~I~~~~~V~rIl~d~~~~~a~GV~~~~~g~-~~~v~A~k~VILAAGai~SP~LLl~SGIG 578 (868)
..||..-+++-++ .|..++.|.++... +.....|....++. ...... +.||+|+|-...|++=..+|.|
T Consensus 93 ~~YL~~yA~~F~l~~~i~f~~~v~~v~~~--~~gkW~V~~~~~~~~~~~~if-d~VvVctGh~~~P~~P~~~g~~ 164 (448)
T KOG1399|consen 93 LEYLRDYAKHFDLLKMINFNTEVVRVDSI--DKGKWRVTTKDNGTQIEEEIF-DAVVVCTGHYVEPRIPQIPGPG 164 (448)
T ss_pred HHHHHHHHHhcChhhheEecccEEEEeec--cCCceeEEEecCCcceeEEEe-eEEEEcccCcCCCCCCcCCCCc
Confidence 4677776666665 78888888888765 21355666665432 222233 3699999999559999998866
No 391
>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family. This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki
Probab=79.00 E-value=4.2 Score=45.72 Aligned_cols=33 Identities=21% Similarity=0.268 Sum_probs=28.6
Q ss_pred ccccCCCcchhhhhhhhhcccccchhhhhhhhhhccc
Q psy1205 331 AVTSGSAPLGGIQALRITRQDLVRWDQHLILALSCHR 367 (868)
Q Consensus 331 ~~~~g~~~~g~~~a~~~~~~g~~~~~~~~~~~~~~~~ 367 (868)
.+++|.|.+|.++|..|+++|+ ++.++|+.+..
T Consensus 2 ViIvGaG~aGl~~A~~L~~~G~----~v~v~Er~~~~ 34 (385)
T TIGR01988 2 IVIVGGGMVGLALALALARSGL----KIALIEATPAE 34 (385)
T ss_pred EEEECCCHHHHHHHHHHhcCCC----EEEEEeCCCcc
Confidence 4679999999999999999997 68888888743
No 392
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=78.76 E-value=1.2 Score=51.32 Aligned_cols=60 Identities=25% Similarity=0.332 Sum_probs=41.4
Q ss_pred hhhccCCCCeEEEccceEeEEEEcCCCCeEEEEEEEECCeEEEEEeccEEEEccCCcCchHHHHhcCC
Q psy1205 510 LRPIISRNNLHILLNTTVTRVIVDPLTKAAIGVEFLTNGRLERLQAKNEVIVCAGAVDSPRILLLSGI 577 (868)
Q Consensus 510 L~~~~~~~nl~I~~~~~V~rIl~d~~~~~a~GV~~~~~g~~~~v~A~k~VILAAGai~SP~LLl~SGI 577 (868)
+....++.+++++++++|++|.- ++++..|. .++. ++.++ .||+|+|..-+..+|..+|+
T Consensus 197 l~~~l~~~gI~v~~~~~v~~i~~---~~~~~~v~--~~~~--~i~~d-~vi~a~G~~p~~~~l~~~gl 256 (444)
T PRK09564 197 MEEELRENGVELHLNEFVKSLIG---EDKVEGVV--TDKG--EYEAD-VVIVATGVKPNTEFLEDTGL 256 (444)
T ss_pred HHHHHHHCCCEEEcCCEEEEEec---CCcEEEEE--eCCC--EEEcC-EEEECcCCCcCHHHHHhcCc
Confidence 33334556899999999999843 23444443 2333 47775 79999998877788887776
No 393
>COG2509 Uncharacterized FAD-dependent dehydrogenases [General function prediction only]
Probab=77.90 E-value=1.3 Score=49.63 Aligned_cols=37 Identities=24% Similarity=0.346 Sum_probs=34.2
Q ss_pred CcceEEEECCCchhhhHHhhhhcc----CcccccccCCCCC
Q psy1205 60 RDYDFIVIGGGSSGAVVANRLSEM----NTCNCPVTQPGPT 96 (868)
Q Consensus 60 ~~~d~~~~g~~~~~~~~a~~~~~~----~~~~~LvlE~G~~ 96 (868)
..||.||||+|++|.-.|.+||.+ +..+|++||.|.+
T Consensus 17 ~~~~vvivgag~~g~f~a~~~s~~ar~~~~~~i~~vd~g~~ 57 (486)
T COG2509 17 AALDVVIVGAGPAGLFAAYELSGDARKVPILKIYVVDVGLD 57 (486)
T ss_pred hccceEEECCCchHHHHHHHHhhhcccCCceEEEEEEeccc
Confidence 579999999999999999999975 5789999999987
No 394
>PRK13984 putative oxidoreductase; Provisional
Probab=77.75 E-value=1.8 Score=52.20 Aligned_cols=39 Identities=18% Similarity=0.286 Sum_probs=34.7
Q ss_pred CCcceEEEECCCchhhhHHhhhhccCcccccccCCCCCcc
Q psy1205 59 DRDYDFIVIGGGSSGAVVANRLSEMNTCNCPVTQPGPTLA 98 (868)
Q Consensus 59 ~~~~d~~~~g~~~~~~~~a~~~~~~~~~~~LvlE~G~~LG 98 (868)
....+++|||+|.+|+.+|..|.+. +++|.|+|+...+|
T Consensus 281 ~~~~~v~IIGaG~aGl~aA~~L~~~-G~~v~vie~~~~~g 319 (604)
T PRK13984 281 KKNKKVAIVGSGPAGLSAAYFLATM-GYEVTVYESLSKPG 319 (604)
T ss_pred cCCCeEEEECCCHHHHHHHHHHHHC-CCeEEEEecCCCCC
Confidence 3568899999999999999999986 78999999998765
No 395
>KOG1276|consensus
Probab=77.56 E-value=1.7 Score=48.30 Aligned_cols=38 Identities=24% Similarity=0.378 Sum_probs=33.9
Q ss_pred cceEEEECCCchhhhHHhhhhc-cCcccccccCCCCCcc
Q psy1205 61 DYDFIVIGGGSSGAVVANRLSE-MNTCNCPVTQPGPTLA 98 (868)
Q Consensus 61 ~~d~~~~g~~~~~~~~a~~~~~-~~~~~~LvlE~G~~LG 98 (868)
.-++.|||||.+|+..|..|+. .|+++|.|-|+++.+|
T Consensus 11 ~~~vaVvGGGiSGL~aay~L~r~~p~~~i~l~Ea~~RvG 49 (491)
T KOG1276|consen 11 GMTVAVVGGGISGLCAAYYLARLGPDVTITLFEASPRVG 49 (491)
T ss_pred cceEEEECCchhHHHHHHHHHhcCCCceEEEEecCCccc
Confidence 3589999999999999999987 4677889999999988
No 396
>COG2907 Predicted NAD/FAD-binding protein [General function prediction only]
Probab=77.09 E-value=1.5 Score=47.37 Aligned_cols=37 Identities=27% Similarity=0.296 Sum_probs=33.3
Q ss_pred CcceEEEECCCchhhhHHhhhhccCcccccccCCCCCcc
Q psy1205 60 RDYDFIVIGGGSSGAVVANRLSEMNTCNCPVTQPGPTLA 98 (868)
Q Consensus 60 ~~~d~~~~g~~~~~~~~a~~~~~~~~~~~LvlE~G~~LG 98 (868)
..-++-|||+|.+|+..|..||. .-+|-|-|++..||
T Consensus 7 ~r~~IAVIGsGisGLSAA~~Ls~--rhdVTLfEA~~rlG 43 (447)
T COG2907 7 PRRKIAVIGSGISGLSAAWLLSR--RHDVTLFEADRRLG 43 (447)
T ss_pred CCcceEEEcccchhhhhHHhhhc--ccceEEEecccccc
Confidence 34578999999999999999998 55999999999988
No 397
>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []. Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....
Probab=76.32 E-value=1.4 Score=52.00 Aligned_cols=35 Identities=26% Similarity=0.340 Sum_probs=29.3
Q ss_pred eEEEECCCchhhhHHhhhhccCcccccccCCCCCcc
Q psy1205 63 DFIVIGGGSSGAVVANRLSEMNTCNCPVTQPGPTLA 98 (868)
Q Consensus 63 d~~~~g~~~~~~~~a~~~~~~~~~~~LvlE~G~~LG 98 (868)
-+.|||+|.+|++.|..|.|. ++.|.++|+..++|
T Consensus 3 rVaVIGaG~sGL~a~k~l~e~-g~~~~~fE~~~~iG 37 (531)
T PF00743_consen 3 RVAVIGAGPSGLAAAKNLLEE-GLEVTCFEKSDDIG 37 (531)
T ss_dssp EEEEE--SHHHHHHHHHHHHT-T-EEEEEESSSSSS
T ss_pred EEEEECccHHHHHHHHHHHHC-CCCCeEEecCCCCC
Confidence 478999999999999999886 79999999999977
No 398
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=76.25 E-value=1.7 Score=49.13 Aligned_cols=58 Identities=19% Similarity=0.383 Sum_probs=40.9
Q ss_pred cCCCCeEEEccceEeEEEEcCCCCeEEEEEEEECCeEEEEEeccEEEEccCCcCchHHHHhcCCC
Q psy1205 514 ISRNNLHILLNTTVTRVIVDPLTKAAIGVEFLTNGRLERLQAKNEVIVCAGAVDSPRILLLSGIG 578 (868)
Q Consensus 514 ~~~~nl~I~~~~~V~rIl~d~~~~~a~GV~~~~~g~~~~v~A~k~VILAAGai~SP~LLl~SGIG 578 (868)
.++.++++++++.|+++..+ ++. ..|++ .+|+ ++.++ .||+|+|.--.+.|+..+|+.
T Consensus 193 l~~~gV~i~~~~~v~~i~~~--~~~-~~v~~-~~g~--~i~~D-~vI~a~G~~p~~~l~~~~gl~ 250 (377)
T PRK04965 193 LTEMGVHLLLKSQLQGLEKT--DSG-IRATL-DSGR--SIEVD-AVIAAAGLRPNTALARRAGLA 250 (377)
T ss_pred HHhCCCEEEECCeEEEEEcc--CCE-EEEEE-cCCc--EEECC-EEEECcCCCcchHHHHHCCCC
Confidence 34568999999999998765 222 23433 3443 57775 799999988888888888763
No 399
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=75.00 E-value=2 Score=48.06 Aligned_cols=33 Identities=27% Similarity=0.550 Sum_probs=28.9
Q ss_pred EEEECCCchhhhHHhhhhc--cCcccccccCCCCC
Q psy1205 64 FIVIGGGSSGAVVANRLSE--MNTCNCPVTQPGPT 96 (868)
Q Consensus 64 ~~~~g~~~~~~~~a~~~~~--~~~~~~LvlE~G~~ 96 (868)
++|||||.||..+|.+|.. .+..+|+|||+...
T Consensus 2 vvIiGgG~aG~~~a~~l~~~~~~~~~I~li~~~~~ 36 (364)
T TIGR03169 2 LVLIGGGHTHALVLRRWAMKPLPGVRVTLINPSST 36 (364)
T ss_pred EEEECCcHHHHHHHHHhcCcCCCCCEEEEECCCCC
Confidence 7999999999999999964 45789999999875
No 400
>TIGR02733 desat_CrtD C-3',4' desaturase CrtD. Members of this family are slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. strain PCC 6803, and close homologs (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyzes the first step that is committed to myxoxanthophyll.
Probab=74.54 E-value=4.6 Score=47.35 Aligned_cols=36 Identities=19% Similarity=0.280 Sum_probs=33.3
Q ss_pred ceEEEECCCchhhhHHhhhhccCcccccccCCCCCcc
Q psy1205 62 YDFIVIGGGSSGAVVANRLSEMNTCNCPVTQPGPTLA 98 (868)
Q Consensus 62 ~d~~~~g~~~~~~~~a~~~~~~~~~~~LvlE~G~~LG 98 (868)
-|+||||+|.+|+++|..|+.. +++|+|||+...+|
T Consensus 2 ~dvvIIGaG~~GL~aa~~La~~-G~~v~vlE~~~~~G 37 (492)
T TIGR02733 2 TSVVVIGAGIAGLTAAALLAKR-GYRVTLLEQHAQPG 37 (492)
T ss_pred CeEEEECcCHHHHHHHHHHHHC-CCeEEEEecCCCCC
Confidence 4899999999999999999985 89999999998877
No 401
>TIGR02730 carot_isom carotene isomerase. Members of this family, including sll0033 (crtH) of Synechocystis sp. PCC 6803, catalyze a cis-trans isomerization of carotenes to the all-trans lycopene, a reaction that can also occur non-enzymatically in light through photoisomerization.
Probab=74.18 E-value=4.2 Score=47.75 Aligned_cols=36 Identities=33% Similarity=0.380 Sum_probs=33.8
Q ss_pred ceEEEECCCchhhhHHhhhhccCcccccccCCCCCcc
Q psy1205 62 YDFIVIGGGSSGAVVANRLSEMNTCNCPVTQPGPTLA 98 (868)
Q Consensus 62 ~d~~~~g~~~~~~~~a~~~~~~~~~~~LvlE~G~~LG 98 (868)
||+||||+|.+|+++|..|++. +++|+||||....|
T Consensus 1 ~dvvViGaG~~Gl~aA~~La~~-G~~V~vlE~~~~~G 36 (493)
T TIGR02730 1 YDAIVIGSGIGGLVTATQLAVK-GAKVLVLERYLIPG 36 (493)
T ss_pred CcEEEECCcHHHHHHHHHHHHC-CCcEEEEECCCCCC
Confidence 7999999999999999999986 89999999998877
No 402
>COG5044 MRS6 RAB proteins geranylgeranyltransferase component A (RAB escort protein) [Posttranslational modification, protein turnover, chaperones]
Probab=74.15 E-value=2.3 Score=46.47 Aligned_cols=56 Identities=21% Similarity=0.202 Sum_probs=41.7
Q ss_pred CcceEEEECCCchhhhHHhhhhccCcccccccCCCCCccccchhhHHHHHHHHHHHHHHh
Q psy1205 60 RDYDFIVIGGGSSGAVVANRLSEMNTCNCPVTQPGPTLASTCGGSAYMLFMGLLEVFIRS 119 (868)
Q Consensus 60 ~~~d~~~~g~~~~~~~~a~~~~~~~~~~~LvlE~G~~LGs~iN~~~y~~~~~l~~~~~~~ 119 (868)
..||+||+|.|..=|+++++||-+ +.+||+|++-..-|+--... +...+..||.+-
T Consensus 5 ~~yDvii~GTgl~esils~~Ls~~-~k~VlhiD~Nd~YG~~~asl---tl~ql~~~~~~~ 60 (434)
T COG5044 5 TLYDVIILGTGLRESILSAALSWD-GKNVLHIDKNDYYGSTSASL---TLTQLEKYFDEC 60 (434)
T ss_pred ccccEEEecccHHHHHHHHHhhhc-CceEEEEeCCCccCccccce---eHHHHHHHhhhh
Confidence 379999999999999999999965 67999999998877110000 345566666544
No 403
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=73.74 E-value=3.2 Score=49.60 Aligned_cols=38 Identities=32% Similarity=0.520 Sum_probs=33.3
Q ss_pred CcceEEEECCCchhhhHHhhhhccCcccccccCCCCCcc
Q psy1205 60 RDYDFIVIGGGSSGAVVANRLSEMNTCNCPVTQPGPTLA 98 (868)
Q Consensus 60 ~~~d~~~~g~~~~~~~~a~~~~~~~~~~~LvlE~G~~LG 98 (868)
...+++|||+|++|+.+|..|+.. +.+|.|+|+...+|
T Consensus 136 ~g~~V~VIGaGpaGL~aA~~l~~~-G~~V~v~e~~~~~G 173 (564)
T PRK12771 136 TGKRVAVIGGGPAGLSAAYHLRRM-GHAVTIFEAGPKLG 173 (564)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHC-CCeEEEEecCCCCC
Confidence 456899999999999999999876 67999999988766
No 404
>TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase. Members of this family are the enzyme 4-hydroxybenzoate 3-monooxygenase, also called p-hydroxybenzoate hydroxylase. It converts 4-hydroxybenzoate + NADPH + molecular oxygen to protocatechuate + NADPH + water. It contains monooxygenase (pfam01360) and FAD binding (pfam01494) domains. Pathways that contain this enzyme include the protocatechuate 4,5-degradation pathway.
Probab=73.70 E-value=6 Score=44.87 Aligned_cols=31 Identities=16% Similarity=0.319 Sum_probs=27.4
Q ss_pred ccccCCCcchhhhhhhhhcccccchhhhhhhhhhc
Q psy1205 331 AVTSGSAPLGGIQALRITRQDLVRWDQHLILALSC 365 (868)
Q Consensus 331 ~~~~g~~~~g~~~a~~~~~~g~~~~~~~~~~~~~~ 365 (868)
.+++|.|.+|+++|+.|++.|+ ++.++|+.+
T Consensus 5 V~IVGaG~aGl~~A~~L~~~G~----~v~viE~~~ 35 (390)
T TIGR02360 5 VAIIGAGPSGLLLGQLLHKAGI----DNVILERQS 35 (390)
T ss_pred EEEECccHHHHHHHHHHHHCCC----CEEEEECCC
Confidence 4679999999999999999998 578888776
No 405
>KOG2960|consensus
Probab=73.70 E-value=3.1 Score=41.75 Aligned_cols=34 Identities=29% Similarity=0.629 Sum_probs=30.6
Q ss_pred CcceEEecCCCccceeecccc-cCCCceEEEecCC
Q psy1205 139 DYDFIVIGGGSSGAVVANRLS-EVPNWRVLLIEAG 172 (868)
Q Consensus 139 ~~d~vi~g~G~~G~~~a~~ls-~~~~~~v~l~~ag 172 (868)
+-|.||+|+|++|...|...+ .||+++|.++|+.
T Consensus 76 esDvviVGAGSaGLsAAY~I~~~rPdlkvaIIE~S 110 (328)
T KOG2960|consen 76 ESDVVIVGAGSAGLSAAYVIAKNRPDLKVAIIESS 110 (328)
T ss_pred ccceEEECCCccccceeeeeeccCCCceEEEEEee
Confidence 567899999999999999988 6899999999965
No 406
>PRK06185 hypothetical protein; Provisional
Probab=73.23 E-value=9.4 Score=43.38 Aligned_cols=34 Identities=21% Similarity=0.404 Sum_probs=18.9
Q ss_pred cceEEEECCCchhhhHHhhhhccCcccccccCCCC
Q psy1205 61 DYDFIVIGGGSSGAVVANRLSEMNTCNCPVTQPGP 95 (868)
Q Consensus 61 ~~d~~~~g~~~~~~~~a~~~~~~~~~~~LvlE~G~ 95 (868)
.||++|||||.+|+.+|..|++. +++|+|||+.+
T Consensus 6 ~~dV~IvGgG~~Gl~~A~~La~~-G~~v~liE~~~ 39 (407)
T PRK06185 6 TTDCCIVGGGPAGMMLGLLLARA-GVDVTVLEKHA 39 (407)
T ss_pred cccEEEECCCHHHHHHHHHHHhC-CCcEEEEecCC
Confidence 35555555555555555555543 45555555543
No 407
>PRK07538 hypothetical protein; Provisional
Probab=72.65 E-value=7.3 Score=44.48 Aligned_cols=32 Identities=13% Similarity=0.213 Sum_probs=27.8
Q ss_pred CccccCCCcchhhhhhhhhcccccchhhhhhhhhhc
Q psy1205 330 PAVTSGSAPLGGIQALRITRQDLVRWDQHLILALSC 365 (868)
Q Consensus 330 p~~~~g~~~~g~~~a~~~~~~g~~~~~~~~~~~~~~ 365 (868)
..+++|.|.+|+++|+.|++.|+ ++.++|+.+
T Consensus 2 dV~IVGaG~aGl~~A~~L~~~G~----~v~v~E~~~ 33 (413)
T PRK07538 2 KVLIAGGGIGGLTLALTLHQRGI----EVVVFEAAP 33 (413)
T ss_pred eEEEECCCHHHHHHHHHHHhCCC----cEEEEEcCC
Confidence 45789999999999999999998 578888765
No 408
>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated
Probab=72.37 E-value=3 Score=52.01 Aligned_cols=36 Identities=19% Similarity=0.255 Sum_probs=31.8
Q ss_pred CCcceEEEECCCchhhhHHhhhhccCcccccccCCCC
Q psy1205 59 DRDYDFIVIGGGSSGAVVANRLSEMNTCNCPVTQPGP 95 (868)
Q Consensus 59 ~~~~d~~~~g~~~~~~~~a~~~~~~~~~~~LvlE~G~ 95 (868)
.....++|||+|+||+.+|..|+.. +.+|.|+|+..
T Consensus 381 ~tgKKVaVVGaGPAGLsAA~~La~~-Gh~Vtv~E~~~ 416 (1028)
T PRK06567 381 PTNYNILVTGLGPAGFSLSYYLLRS-GHNVTAIDGLK 416 (1028)
T ss_pred CCCCeEEEECcCHHHHHHHHHHHhC-CCeEEEEcccc
Confidence 3567899999999999999999975 89999999854
No 409
>COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion]
Probab=69.24 E-value=2.1 Score=48.75 Aligned_cols=34 Identities=35% Similarity=0.784 Sum_probs=30.4
Q ss_pred CcceEEecCCCccceeecccccCCCceEEEecCCC
Q psy1205 139 DYDFIVIGGGSSGAVVANRLSEVPNWRVLLIEAGG 173 (868)
Q Consensus 139 ~~d~vi~g~G~~G~~~a~~ls~~~~~~v~l~~ag~ 173 (868)
+||++|||+|.+|+..|..+++.. .+|+|+|.+.
T Consensus 3 ~~DVvIVGaGPAGs~aA~~la~~G-~~VlvlEk~~ 36 (396)
T COG0644 3 EYDVVIVGAGPAGSSAARRLAKAG-LDVLVLEKGS 36 (396)
T ss_pred eeeEEEECCchHHHHHHHHHHHcC-CeEEEEecCC
Confidence 589999999999999999999754 8999999873
No 410
>PF13454 NAD_binding_9: FAD-NAD(P)-binding
Probab=69.00 E-value=2.9 Score=40.71 Aligned_cols=31 Identities=39% Similarity=0.637 Sum_probs=25.7
Q ss_pred EEECCCchhhhHHhhhhccC----cccccccCCCC
Q psy1205 65 IVIGGGSSGAVVANRLSEMN----TCNCPVTQPGP 95 (868)
Q Consensus 65 ~~~g~~~~~~~~a~~~~~~~----~~~~LvlE~G~ 95 (868)
.|||+|.+|..++.+|.... ..+|.|+|+.+
T Consensus 1 AIIG~G~~G~~~l~~L~~~~~~~~~~~I~vfd~~~ 35 (156)
T PF13454_consen 1 AIIGGGPSGLAVLERLLRQADPKPPLEITVFDPSP 35 (156)
T ss_pred CEECcCHHHHHHHHHHHHhcCCCCCCEEEEEcCCC
Confidence 38999999999999998763 57888888844
No 411
>KOG2415|consensus
Probab=68.13 E-value=2.6 Score=46.59 Aligned_cols=74 Identities=18% Similarity=0.182 Sum_probs=53.7
Q ss_pred ccchhhhhhhhccCCCCeEEEccceEeEEEEcCCCCeEEEEEEEE-----CCe-------EEEEEeccEEEEccCCcC--
Q psy1205 502 RLSTSKAFLRPIISRNNLHILLNTTVTRVIVDPLTKAAIGVEFLT-----NGR-------LERLQAKNEVIVCAGAVD-- 567 (868)
Q Consensus 502 R~s~~~~~L~~~~~~~nl~I~~~~~V~rIl~d~~~~~a~GV~~~~-----~g~-------~~~v~A~k~VILAAGai~-- 567 (868)
|.+-...||...++.-+++|..+.-+..|+++ +++.|.||.-.+ +|. -..++|+ .-|+|-|.=+
T Consensus 181 ~L~~~v~wLg~kAEe~GvEiyPg~aaSevly~-edgsVkGiaT~D~GI~k~G~pKd~FerGme~hak-~TifAEGc~G~L 258 (621)
T KOG2415|consen 181 SLGQLVRWLGEKAEELGVEIYPGFAASEVLYD-EDGSVKGIATNDVGISKDGAPKDTFERGMEFHAK-VTIFAEGCHGSL 258 (621)
T ss_pred EHHHHHHHHHHHHHhhCceeccccchhheeEc-CCCcEeeEeeccccccCCCCccccccccceecce-eEEEeccccchh
Confidence 34556678877777889999999999999998 468899987554 222 2457774 7888888655
Q ss_pred chHHHHhcCC
Q psy1205 568 SPRILLLSGI 577 (868)
Q Consensus 568 SP~LLl~SGI 577 (868)
|-||+..-++
T Consensus 259 skqi~kkf~L 268 (621)
T KOG2415|consen 259 SKQIIKKFDL 268 (621)
T ss_pred HHHHHHHhCc
Confidence 4677766544
No 412
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=67.73 E-value=3.3 Score=43.02 Aligned_cols=33 Identities=33% Similarity=0.453 Sum_probs=29.7
Q ss_pred eEEEECCCchhhhHHhhhhccCcccccccCCCCC
Q psy1205 63 DFIVIGGGSSGAVVANRLSEMNTCNCPVTQPGPT 96 (868)
Q Consensus 63 d~~~~g~~~~~~~~a~~~~~~~~~~~LvlE~G~~ 96 (868)
.|||||+|.-|..+|..|++. +..|++||+-..
T Consensus 2 ~iiIiG~G~vG~~va~~L~~~-g~~Vv~Id~d~~ 34 (225)
T COG0569 2 KIIIIGAGRVGRSVARELSEE-GHNVVLIDRDEE 34 (225)
T ss_pred EEEEECCcHHHHHHHHHHHhC-CCceEEEEcCHH
Confidence 589999999999999999986 679999998774
No 413
>TIGR02732 zeta_caro_desat carotene 7,8-desaturase. Carotene 7,8-desaturase, also called zeta-carotene desaturase, catalyzes multiple steps in the pathway from geranylgeranyl-PP to all-trans-lycopene in plants and cyanobacteria. A similar enzyme and pathway is found in the green sulfur bacterium Chlorobium tepidum.
Probab=67.09 E-value=8.2 Score=45.05 Aligned_cols=35 Identities=14% Similarity=0.290 Sum_probs=31.6
Q ss_pred eEEEECCCchhhhHHhhhhccCcccccccCCCCCcc
Q psy1205 63 DFIVIGGGSSGAVVANRLSEMNTCNCPVTQPGPTLA 98 (868)
Q Consensus 63 d~~~~g~~~~~~~~a~~~~~~~~~~~LvlE~G~~LG 98 (868)
+++|||||.+|+.+|..|++. +.+|.|+|+...+|
T Consensus 1 ~v~IiG~G~aGl~aA~~L~~~-G~~v~v~E~~~~~G 35 (474)
T TIGR02732 1 KVAIVGAGLAGLSTAVELVDA-GHEVDIYESRSFIG 35 (474)
T ss_pred CEEEECCCHHHHHHHHHHHHC-CCcEEEEEecCCCC
Confidence 478999999999999999985 78999999988876
No 414
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=65.65 E-value=3.7 Score=44.45 Aligned_cols=59 Identities=25% Similarity=0.291 Sum_probs=48.8
Q ss_pred cCCCCeEEEccceEeEEEEcCCCCeEEEEEEEE--CCeEEEEEeccEEEEccCCcCchHHHHhc
Q psy1205 514 ISRNNLHILLNTTVTRVIVDPLTKAAIGVEFLT--NGRLERLQAKNEVIVCAGAVDSPRILLLS 575 (868)
Q Consensus 514 ~~~~nl~I~~~~~V~rIl~d~~~~~a~GV~~~~--~g~~~~v~A~k~VILAAGai~SP~LLl~S 575 (868)
+.-+|++|+++++-+.|.=| +.+++|.+|++ .|..+.+.-. .|.+--|-+-+..+|.=+
T Consensus 400 ~sl~Nv~ii~na~Ttei~Gd--g~kV~Gl~Y~dr~sge~~~l~Le-GvFVqIGL~PNT~WLkg~ 460 (520)
T COG3634 400 RSLPNVTIITNAQTTEVKGD--GDKVTGLEYRDRVSGEEHHLELE-GVFVQIGLLPNTEWLKGA 460 (520)
T ss_pred hcCCCcEEEecceeeEEecC--CceecceEEEeccCCceeEEEee-eeEEEEecccChhHhhch
Confidence 34589999999999999776 78999999987 6777777765 688888988888888754
No 415
>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B.
Probab=65.41 E-value=10 Score=42.07 Aligned_cols=63 Identities=22% Similarity=0.315 Sum_probs=40.1
Q ss_pred hhhhhhhccCCCCeEEEccceEeEEEEcCCCC-eEEEEEEEE-CCeEEEEEeccEEEEccCCcCchHH
Q psy1205 506 SKAFLRPIISRNNLHILLNTTVTRVIVDPLTK-AAIGVEFLT-NGRLERLQAKNEVIVCAGAVDSPRI 571 (868)
Q Consensus 506 ~~~~L~~~~~~~nl~I~~~~~V~rIl~d~~~~-~a~GV~~~~-~g~~~~v~A~k~VILAAGai~SP~L 571 (868)
...|+..++++-.-.+..++.|++|..+.+++ ...-|+..+ +|...++.|+ .||||.| .+|.|
T Consensus 97 f~dYl~Wva~~~~~~v~~~~~V~~I~~~~~~~~~~~~V~~~~~~g~~~~~~ar-~vVla~G--~~P~i 161 (341)
T PF13434_consen 97 FNDYLRWVAEQLDNQVRYGSEVTSIEPDDDGDEDLFRVTTRDSDGDGETYRAR-NVVLATG--GQPRI 161 (341)
T ss_dssp HHHHHHHHHCCGTTTEEESEEEEEEEEEEETTEEEEEEEEEETTS-EEEEEES-EEEE------EE--
T ss_pred HHHHHHHHHHhCCCceEECCEEEEEEEecCCCccEEEEEEeecCCCeeEEEeC-eEEECcC--CCCCC
Confidence 44678777776665588899999999875433 344454443 6778899996 7999999 66654
No 416
>KOG2403|consensus
Probab=65.36 E-value=6.2 Score=45.43 Aligned_cols=24 Identities=21% Similarity=0.108 Sum_probs=20.9
Q ss_pred CCccccCCCcchhhhhhhhhcccc
Q psy1205 329 MPAVTSGSAPLGGIQALRITRQDL 352 (868)
Q Consensus 329 ~p~~~~g~~~~g~~~a~~~~~~g~ 352 (868)
+-.+++|+|.+|+..|.-+++.|.
T Consensus 56 ~da~vvgaggAGlr~~~~lae~g~ 79 (642)
T KOG2403|consen 56 YDAVVVGAGGAGLRAARGLAELGE 79 (642)
T ss_pred ceeEEEeccchhhhhhhhhhhcCc
Confidence 555669999999999999999985
No 417
>TIGR02734 crtI_fam phytoene desaturase. Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family, part of the larger Pfam family pfam01593, which also contains amino oxidases, are CrtI itself; it is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis.
Probab=65.05 E-value=8.3 Score=45.29 Aligned_cols=34 Identities=26% Similarity=0.335 Sum_probs=31.6
Q ss_pred EEEECCCchhhhHHhhhhccCcccccccCCCCCcc
Q psy1205 64 FIVIGGGSSGAVVANRLSEMNTCNCPVTQPGPTLA 98 (868)
Q Consensus 64 ~~~~g~~~~~~~~a~~~~~~~~~~~LvlE~G~~LG 98 (868)
+||||+|.+|+++|.+|++. +++|+|||+-..+|
T Consensus 1 vvVIGaG~~GL~aA~~La~~-G~~V~VlE~~~~~G 34 (502)
T TIGR02734 1 AVVIGAGFGGLALAIRLAAA-GIPVTVVEQRDKPG 34 (502)
T ss_pred CEEECcCHHHHHHHHHHHhC-CCcEEEEECCCCCc
Confidence 48999999999999999986 79999999999877
No 418
>KOG4254|consensus
Probab=64.74 E-value=5.5 Score=44.75 Aligned_cols=40 Identities=28% Similarity=0.473 Sum_probs=34.0
Q ss_pred CCCcceEEEECCCchhhhHHhhhhccCcccccccCCCCCcc
Q psy1205 58 PDRDYDFIVIGGGSSGAVVANRLSEMNTCNCPVTQPGPTLA 98 (868)
Q Consensus 58 ~~~~~d~~~~g~~~~~~~~a~~~~~~~~~~~LvlE~G~~LG 98 (868)
...+||.+|||+|--|++.|+.|+.- +.+|.|+||-...|
T Consensus 11 ~~~~ydavvig~GhnGL~aaayl~r~-g~~V~vlerrhv~g 50 (561)
T KOG4254|consen 11 AKPEYDAVVIGGGHNGLTAAAYLARY-GQSVAVLERRHVIG 50 (561)
T ss_pred CCcccceEEecCCccchhHHHHHHhc-CcceEEEEEeeecC
Confidence 35689999999999999999999864 78999999985544
No 419
>TIGR02731 phytoene_desat phytoene desaturase. Plants and cyanobacteria (and, supposedly, Chlorobium tepidum) have a conserved pathway from two molecules geranylgeranyl-PP to one of all-trans-lycopene. Members of this family are the enzyme pytoene desaturase (also called phytoene dehydrogenase). This model does not include the region of the chloroplast transit peptide in plants. A closely related family, excluded by this model, is zeta-carotene desaturase, another enzyme in the same pathway.
Probab=63.08 E-value=11 Score=43.60 Aligned_cols=49 Identities=10% Similarity=0.176 Sum_probs=36.1
Q ss_pred CCCCeEEEccceEeEEEEcCCCCeEEEEEEEEC-C-eEEEEEeccEEEEccCC
Q psy1205 515 SRNNLHILLNTTVTRVIVDPLTKAAIGVEFLTN-G-RLERLQAKNEVIVCAGA 565 (868)
Q Consensus 515 ~~~nl~I~~~~~V~rIl~d~~~~~a~GV~~~~~-g-~~~~v~A~k~VILAAGa 565 (868)
++.+.+|++++.|++|..++ +++++||++.++ + +.+++.|+ .||+|+..
T Consensus 224 ~~~g~~i~l~~~V~~I~~~~-~~~v~~v~~~~~~~~~~~~~~a~-~VI~a~p~ 274 (453)
T TIGR02731 224 TSRGGEVRLNSRLKEIVLNE-DGSVKHFVLADGEGQRRFEVTAD-AYVSAMPV 274 (453)
T ss_pred HhcCCEEeCCCeeEEEEECC-CCCEEEEEEecCCCCceeEEECC-EEEEcCCH
Confidence 34578999999999998753 567889988643 2 22367785 79998864
No 420
>COG4529 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=62.71 E-value=5.9 Score=45.13 Aligned_cols=37 Identities=27% Similarity=0.495 Sum_probs=31.7
Q ss_pred ceEEEECCCchhhhHHhhhhccCc--ccccccCCCCCcc
Q psy1205 62 YDFIVIGGGSSGAVVANRLSEMNT--CNCPVTQPGPTLA 98 (868)
Q Consensus 62 ~d~~~~g~~~~~~~~a~~~~~~~~--~~~LvlE~G~~LG 98 (868)
++++|||||++|..+|..|-..+. .+|-|+|.-+++|
T Consensus 2 ~~VAIIGgG~sGi~~A~~Ll~~~~~~~~Isi~e~~~~~G 40 (474)
T COG4529 2 FKVAIIGGGFSGIYMAAHLLKSPRPSGLISIFEPRPNFG 40 (474)
T ss_pred ceEEEECCchHHHHHHHHHHhCCCCCCceEEeccccccC
Confidence 689999999999999999977543 4589999999876
No 421
>COG3486 IucD Lysine/ornithine N-monooxygenase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=61.59 E-value=5.8 Score=44.13 Aligned_cols=37 Identities=24% Similarity=0.223 Sum_probs=34.5
Q ss_pred CcceEEEECCCchhhhHHhhhhccCcccccccCCCCC
Q psy1205 60 RDYDFIVIGGGSSGAVVANRLSEMNTCNCPVTQPGPT 96 (868)
Q Consensus 60 ~~~d~~~~g~~~~~~~~a~~~~~~~~~~~LvlE~G~~ 96 (868)
..||+|.||-|+.-+.+|.-|.+....++|.|||-+.
T Consensus 4 ~~~DliGIG~GPfNL~LA~ll~e~~~~~~lFLerkp~ 40 (436)
T COG3486 4 EVLDLIGIGIGPFNLSLAALLEEHSGLKSLFLERKPD 40 (436)
T ss_pred cceeeEEEccCchHHHHHHHhccccCcceEEEecCCC
Confidence 4699999999999999999999987799999999987
No 422
>PLN02487 zeta-carotene desaturase
Probab=58.22 E-value=13 Score=44.30 Aligned_cols=38 Identities=18% Similarity=0.327 Sum_probs=33.8
Q ss_pred CcceEEEECCCchhhhHHhhhhccCcccccccCCCCCcc
Q psy1205 60 RDYDFIVIGGGSSGAVVANRLSEMNTCNCPVTQPGPTLA 98 (868)
Q Consensus 60 ~~~d~~~~g~~~~~~~~a~~~~~~~~~~~LvlE~G~~LG 98 (868)
...+++|||+|.+|+.+|..|++. +.+|.|+|+.+.+|
T Consensus 74 ~~~~v~iiG~G~~Gl~~a~~L~~~-g~~v~i~E~~~~~g 111 (569)
T PLN02487 74 PKLKVAIIGAGLAGMSTAVELLDQ-GHEVDIYESRPFIG 111 (569)
T ss_pred CCCeEEEECCCHHHHHHHHHHHhC-CCeeEEEecCCCCC
Confidence 346999999999999999999976 68999999988766
No 423
>PLN00093 geranylgeranyl diphosphate reductase; Provisional
Probab=57.68 E-value=4.9 Score=46.54 Aligned_cols=37 Identities=35% Similarity=0.570 Sum_probs=31.5
Q ss_pred CCCCCcceEEecCCCccceeecccccCCCceEEEecCC
Q psy1205 135 FPDRDYDFIVIGGGSSGAVVANRLSEVPNWRVLLIEAG 172 (868)
Q Consensus 135 ~~~~~~d~vi~g~G~~G~~~a~~ls~~~~~~v~l~~ag 172 (868)
.....||++|+|+|.+|+..|..|+. .+.+|+|+|..
T Consensus 35 ~~~~~~DViIVGaGPAG~~aA~~LA~-~G~~VlllEr~ 71 (450)
T PLN00093 35 LSGRKLRVAVIGGGPAGACAAETLAK-GGIETFLIERK 71 (450)
T ss_pred cCCCCCeEEEECCCHHHHHHHHHHHh-CCCcEEEEecC
Confidence 34557999999999999999999985 57899999964
No 424
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=57.38 E-value=35 Score=40.30 Aligned_cols=22 Identities=23% Similarity=0.504 Sum_probs=19.7
Q ss_pred ccccCCCcchhhhhhhhhcccc
Q psy1205 331 AVTSGSAPLGGIQALRITRQDL 352 (868)
Q Consensus 331 ~~~~g~~~~g~~~a~~~~~~g~ 352 (868)
.+++|.|.+|..+|..+++.|+
T Consensus 214 vvIIGgGpaGl~aA~~la~~G~ 235 (517)
T PRK15317 214 VLVVGGGPAGAAAAIYAARKGI 235 (517)
T ss_pred EEEECCCHHHHHHHHHHHHCCC
Confidence 4678999999999999999997
No 425
>COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning]
Probab=57.27 E-value=12 Score=43.28 Aligned_cols=53 Identities=26% Similarity=0.450 Sum_probs=37.1
Q ss_pred cCCCCeEEEccceEeEEEEcCCCCeEEEEEEEECCeEEEEEeccEEEEccCCcCchHHH
Q psy1205 514 ISRNNLHILLNTTVTRVIVDPLTKAAIGVEFLTNGRLERLQAKNEVIVCAGAVDSPRIL 572 (868)
Q Consensus 514 ~~~~nl~I~~~~~V~rIl~d~~~~~a~GV~~~~~g~~~~v~A~k~VILAAGai~SP~LL 572 (868)
.+.+|++|+-+ .|+.|++++ +.++.||.. ..|. .+.| |.|||++|+|-.-+|.
T Consensus 111 e~~~NL~l~q~-~v~dli~e~-~~~v~GV~t-~~G~--~~~a-~aVVlTTGTFL~G~I~ 163 (621)
T COG0445 111 ENQPNLHLLQG-EVEDLIVEE-GQRVVGVVT-ADGP--EFHA-KAVVLTTGTFLRGKIH 163 (621)
T ss_pred hcCCCceehHh-hhHHHhhcC-CCeEEEEEe-CCCC--eeec-CEEEEeecccccceEE
Confidence 45789999775 588888862 447888864 3443 4667 4799999998655543
No 426
>PF05834 Lycopene_cycl: Lycopene cyclase protein; InterPro: IPR008671 This family consists of lycopene beta and epsilon cyclase proteins. Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare [].; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0016117 carotenoid biosynthetic process
Probab=55.65 E-value=5.4 Score=44.99 Aligned_cols=31 Identities=42% Similarity=0.767 Sum_probs=27.6
Q ss_pred ceEEecCCCccceeeccc--ccCCCceEEEecCC
Q psy1205 141 DFIVIGGGSSGAVVANRL--SEVPNWRVLLIEAG 172 (868)
Q Consensus 141 d~vi~g~G~~G~~~a~~l--s~~~~~~v~l~~ag 172 (868)
|+||+|+|.+|..+|..+ + +++.+|+|+|+.
T Consensus 1 DviIvGaGpAGlslA~~l~~~-~~g~~Vllid~~ 33 (374)
T PF05834_consen 1 DVIIVGAGPAGLSLARRLADA-RPGLSVLLIDPK 33 (374)
T ss_pred CEEEECCcHHHHHHHHHHHhc-CCCCEEEEEcCC
Confidence 789999999999999998 5 467899999976
No 427
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=55.44 E-value=44 Score=35.73 Aligned_cols=33 Identities=24% Similarity=0.379 Sum_probs=30.6
Q ss_pred ceEEEECCCchhhhHHhhhhccCcccccccCCCC
Q psy1205 62 YDFIVIGGGSSGAVVANRLSEMNTCNCPVTQPGP 95 (868)
Q Consensus 62 ~d~~~~g~~~~~~~~a~~~~~~~~~~~LvlE~G~ 95 (868)
||++|||||.||+.+|..|... +.+|+|+|++.
T Consensus 1 ~dvvIIG~G~aGl~aA~~l~~~-g~~v~lie~~~ 33 (300)
T TIGR01292 1 YDVIIIGAGPAGLTAAIYAARA-NLKTLIIEGME 33 (300)
T ss_pred CcEEEECCCHHHHHHHHHHHHC-CCCEEEEeccC
Confidence 7999999999999999999875 78999999986
No 428
>TIGR02023 BchP-ChlP geranylgeranyl reductase. This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ).
Probab=54.62 E-value=4.5 Score=45.83 Aligned_cols=32 Identities=44% Similarity=0.747 Sum_probs=28.4
Q ss_pred cceEEecCCCccceeecccccCCCceEEEecCC
Q psy1205 140 YDFIVIGGGSSGAVVANRLSEVPNWRVLLIEAG 172 (868)
Q Consensus 140 ~d~vi~g~G~~G~~~a~~ls~~~~~~v~l~~ag 172 (868)
||++|+|+|.+|+..|..|+. .+.+|+|+|..
T Consensus 1 yDVvIVGaGpAG~~aA~~La~-~G~~V~l~E~~ 32 (388)
T TIGR02023 1 YDVAVIGGGPSGATAAETLAR-AGIETILLERA 32 (388)
T ss_pred CeEEEECCCHHHHHHHHHHHh-CCCcEEEEECC
Confidence 689999999999999999985 57899999964
No 429
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=54.15 E-value=7.1 Score=35.50 Aligned_cols=32 Identities=28% Similarity=0.482 Sum_probs=27.8
Q ss_pred EEEECCCchhhhHHhhhhccCcccccccCCCCC
Q psy1205 64 FIVIGGGSSGAVVANRLSEMNTCNCPVTQPGPT 96 (868)
Q Consensus 64 ~~~~g~~~~~~~~a~~~~~~~~~~~LvlE~G~~ 96 (868)
|||+|.|..|..+|..|.+ ...+|.++|+-+.
T Consensus 1 vvI~G~g~~~~~i~~~L~~-~~~~vvvid~d~~ 32 (116)
T PF02254_consen 1 VVIIGYGRIGREIAEQLKE-GGIDVVVIDRDPE 32 (116)
T ss_dssp EEEES-SHHHHHHHHHHHH-TTSEEEEEESSHH
T ss_pred eEEEcCCHHHHHHHHHHHh-CCCEEEEEECCcH
Confidence 6999999999999999999 4579999999874
No 430
>KOG2844|consensus
Probab=53.29 E-value=10 Score=44.80 Aligned_cols=35 Identities=29% Similarity=0.410 Sum_probs=27.5
Q ss_pred CcceEEEECCCchhhhHHhhhhccCcccccccCCC
Q psy1205 60 RDYDFIVIGGGSSGAVVANRLSEMNTCNCPVTQPG 94 (868)
Q Consensus 60 ~~~d~~~~g~~~~~~~~a~~~~~~~~~~~LvlE~G 94 (868)
...|.+|||||..||-+|..|+.....-++|+||-
T Consensus 38 ~~A~vvViggG~~g~~~~yhlak~g~k~avlle~~ 72 (856)
T KOG2844|consen 38 STADVVVIGGGSLGCSTAYHLAKRGMKGAVLLERS 72 (856)
T ss_pred CcccEEEEcCCchhHHHHHHHHHccccceEEEeee
Confidence 35799999999999999999998643335666654
No 431
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=53.28 E-value=7.6 Score=37.23 Aligned_cols=31 Identities=26% Similarity=0.588 Sum_probs=26.5
Q ss_pred EEEECCCchhhhHHhhhhccCcccccccCCCC
Q psy1205 64 FIVIGGGSSGAVVANRLSEMNTCNCPVTQPGP 95 (868)
Q Consensus 64 ~~~~g~~~~~~~~a~~~~~~~~~~~LvlE~G~ 95 (868)
+.|+|+|..|+..|.+|++ .+.+|.++-|+.
T Consensus 1 I~I~G~GaiG~~~a~~L~~-~g~~V~l~~r~~ 31 (151)
T PF02558_consen 1 ILIIGAGAIGSLYAARLAQ-AGHDVTLVSRSP 31 (151)
T ss_dssp EEEESTSHHHHHHHHHHHH-TTCEEEEEESHH
T ss_pred CEEECcCHHHHHHHHHHHH-CCCceEEEEccc
Confidence 4689999999999999988 478888877765
No 432
>COG0562 Glf UDP-galactopyranose mutase [Cell envelope biogenesis, outer membrane]
Probab=53.08 E-value=5.8 Score=42.72 Aligned_cols=32 Identities=38% Similarity=0.739 Sum_probs=27.5
Q ss_pred cceEEecCCCccceeecccccCCCceEEEecCC
Q psy1205 140 YDFIVIGGGSSGAVVANRLSEVPNWRVLLIEAG 172 (868)
Q Consensus 140 ~d~vi~g~G~~G~~~a~~ls~~~~~~v~l~~ag 172 (868)
||++|||+|..|++.|..++. -+-+|+|+|.-
T Consensus 2 fd~lIVGaGlsG~V~A~~a~~-~gk~VLIvekR 33 (374)
T COG0562 2 FDYLIVGAGLSGAVIAEVAAQ-LGKRVLIVEKR 33 (374)
T ss_pred CcEEEECCchhHHHHHHHHHH-cCCEEEEEecc
Confidence 789999999999999997764 46699999965
No 433
>PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=52.36 E-value=6.6 Score=44.53 Aligned_cols=34 Identities=26% Similarity=0.494 Sum_probs=29.5
Q ss_pred cceEEecCCCccceeecccccCC-CceEEEecCCC
Q psy1205 140 YDFIVIGGGSSGAVVANRLSEVP-NWRVLLIEAGG 173 (868)
Q Consensus 140 ~d~vi~g~G~~G~~~a~~ls~~~-~~~v~l~~ag~ 173 (868)
+|.+|+|+|.+|...|..|+... +++|+|+|..+
T Consensus 2 ~dv~IvGaG~aGl~~A~~L~~~g~g~~v~liE~~~ 36 (403)
T PRK07333 2 CDVVIAGGGYVGLALAVALKQAAPHLPVTVVDAAP 36 (403)
T ss_pred CCEEEECccHHHHHHHHHHhcCCCCCEEEEEeCCC
Confidence 68999999999999999998753 68999999763
No 434
>PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed
Probab=52.21 E-value=6.7 Score=44.34 Aligned_cols=34 Identities=29% Similarity=0.553 Sum_probs=29.8
Q ss_pred CCcceEEecCCCccceeecccccCCCceEEEecCC
Q psy1205 138 RDYDFIVIGGGSSGAVVANRLSEVPNWRVLLIEAG 172 (868)
Q Consensus 138 ~~~d~vi~g~G~~G~~~a~~ls~~~~~~v~l~~ag 172 (868)
+.+|++|+|+|.+|...|..|+. .+.+|+|+|+.
T Consensus 4 ~~~dViIvGgG~aGl~~A~~La~-~G~~V~liE~~ 37 (391)
T PRK08020 4 QPTDIAIVGGGMVGAALALGLAQ-HGFSVAVLEHA 37 (391)
T ss_pred ccccEEEECcCHHHHHHHHHHhc-CCCEEEEEcCC
Confidence 45899999999999999999985 57899999975
No 435
>COG1206 Gid NAD(FAD)-utilizing enzyme possibly involved in translation [Translation, ribosomal structure and biogenesis]
Probab=52.19 E-value=8.1 Score=41.73 Aligned_cols=32 Identities=22% Similarity=0.305 Sum_probs=27.9
Q ss_pred EEEECCCchhhhHHhhhhccCcccccccCCCCC
Q psy1205 64 FIVIGGGSSGAVVANRLSEMNTCNCPVTQPGPT 96 (868)
Q Consensus 64 ~~~~g~~~~~~~~a~~~~~~~~~~~LvlE~G~~ 96 (868)
+.|||||.||+-+|+.+++. +.+|.|-|=-+.
T Consensus 6 i~VIGaGLAGSEAAwqiA~~-Gv~V~L~EMRp~ 37 (439)
T COG1206 6 INVIGAGLAGSEAAWQIAKR-GVPVILYEMRPV 37 (439)
T ss_pred eEEEcccccccHHHHHHHHc-CCcEEEEEcccc
Confidence 78999999999999999986 789999885553
No 436
>TIGR01789 lycopene_cycl lycopene cyclase. This model represents a family of bacterial lycopene cyclases catalyzing the transformation of lycopene to carotene. These enzymes are found in a limited spectrum of alpha and gamma proteobacteria as well as Flavobacterium.
Probab=51.88 E-value=5.9 Score=44.61 Aligned_cols=33 Identities=45% Similarity=0.888 Sum_probs=28.8
Q ss_pred ceEEecCCCccceeeccccc-CCCceEEEecCCC
Q psy1205 141 DFIVIGGGSSGAVVANRLSE-VPNWRVLLIEAGG 173 (868)
Q Consensus 141 d~vi~g~G~~G~~~a~~ls~-~~~~~v~l~~ag~ 173 (868)
|++|+|+|.+|..+|.+|+. .++.+|+++|+++
T Consensus 1 DviIvGaG~AGl~lA~~L~~~~~g~~V~lle~~~ 34 (370)
T TIGR01789 1 DCIIVGGGLAGGLIALRLQRARPDFRIRVIEAGR 34 (370)
T ss_pred CEEEECccHHHHHHHHHHHhcCCCCeEEEEeCCC
Confidence 68999999999999999885 3688999999863
No 437
>PTZ00363 rab-GDP dissociation inhibitor; Provisional
Probab=51.43 E-value=8.5 Score=44.37 Aligned_cols=34 Identities=29% Similarity=0.460 Sum_probs=30.2
Q ss_pred CCcceEEecCCCccceeecccccCCCceEEEecCC
Q psy1205 138 RDYDFIVIGGGSSGAVVANRLSEVPNWRVLLIEAG 172 (868)
Q Consensus 138 ~~~d~vi~g~G~~G~~~a~~ls~~~~~~v~l~~ag 172 (868)
++||+||+|+|..|+.+|..||. .+.+|+++|+.
T Consensus 3 ~~~DViViGtGL~e~ilAa~Ls~-~GkkVLhlD~n 36 (443)
T PTZ00363 3 ETYDVIVCGTGLKECILSGLLSV-NGKKVLHMDRN 36 (443)
T ss_pred CcceEEEECCChHHHHHHhhhhh-CCCEEEEecCC
Confidence 36999999999999999999995 56799999976
No 438
>KOG2495|consensus
Probab=51.17 E-value=7 Score=43.71 Aligned_cols=35 Identities=23% Similarity=0.545 Sum_probs=29.2
Q ss_pred ceEEEECCCchhhhHHhhhhcc---------C----cccccccCCCCC
Q psy1205 62 YDFIVIGGGSSGAVVANRLSEM---------N----TCNCPVTQPGPT 96 (868)
Q Consensus 62 ~d~~~~g~~~~~~~~a~~~~~~---------~----~~~~LvlE~G~~ 96 (868)
--|+|||||++|--.|+.|+.- | ..+|.||||.+.
T Consensus 219 Lh~VVVGGGPTGVEFAaEL~Dfi~~Dl~k~yp~l~~~i~vtLiEA~d~ 266 (491)
T KOG2495|consen 219 LHFVVVGGGPTGVEFAAELADFIPEDLRKIYPELKKDIKVTLIEAADH 266 (491)
T ss_pred EEEEEECCCCcceeehHHHHHHHHHHHHHhhhcchhheEEEeeccchh
Confidence 4689999999999999999871 1 249999999985
No 439
>PRK07208 hypothetical protein; Provisional
Probab=50.28 E-value=30 Score=40.35 Aligned_cols=56 Identities=18% Similarity=0.112 Sum_probs=38.0
Q ss_pred cCCCCeEEEccceEeEEEEcCCCCeEEEEEEEE-CCeEEEEEeccEEEEccCCcCchHH
Q psy1205 514 ISRNNLHILLNTTVTRVIVDPLTKAAIGVEFLT-NGRLERLQAKNEVIVCAGAVDSPRI 571 (868)
Q Consensus 514 ~~~~nl~I~~~~~V~rIl~d~~~~~a~GV~~~~-~g~~~~v~A~k~VILAAGai~SP~L 571 (868)
.+..+.+|++++.|++|..++ ++.+++|.... +|+..++.|+ .||++.-.-...++
T Consensus 228 l~~~g~~i~~~~~V~~I~~~~-~~~v~~~~~~~~~g~~~~~~ad-~VI~a~p~~~l~~~ 284 (479)
T PRK07208 228 LEALGGKVVLNAKVVGLHHDG-DGRIAVVVVNDTDGTEETVTAD-QVISSMPLRELVAA 284 (479)
T ss_pred HHHcCCEEEeCCEEEEEEEcC-CcEEEEEEEEcCCCCEEEEEcC-EEEECCCHHHHHHh
Confidence 344578999999999999873 34455555543 4655678885 68887665444444
No 440
>PLN02985 squalene monooxygenase
Probab=49.67 E-value=45 Score=39.37 Aligned_cols=57 Identities=23% Similarity=0.284 Sum_probs=40.5
Q ss_pred hhhccCCCCeEEEccceEeEEEEcCCCCeEEEEEEEE-CCeEEEEEeccEEEEccCCcCchH
Q psy1205 510 LRPIISRNNLHILLNTTVTRVIVDPLTKAAIGVEFLT-NGRLERLQAKNEVIVCAGAVDSPR 570 (868)
Q Consensus 510 L~~~~~~~nl~I~~~~~V~rIl~d~~~~~a~GV~~~~-~g~~~~v~A~k~VILAAGai~SP~ 570 (868)
+..+.+.+|+++..+ +|++++.+ ++.+.||++.. +|++.+++|+ -||.|.|....-|
T Consensus 154 ~~~a~~~~~V~i~~g-tvv~li~~--~~~v~gV~~~~~dG~~~~~~Ad-LVVgADG~~S~vR 211 (514)
T PLN02985 154 RQKASSLPNVRLEEG-TVKSLIEE--KGVIKGVTYKNSAGEETTALAP-LTVVCDGCYSNLR 211 (514)
T ss_pred HHHHHhCCCeEEEee-eEEEEEEc--CCEEEEEEEEcCCCCEEEEECC-EEEECCCCchHHH
Confidence 333445678999854 67887665 56788998865 6777788885 7888888765544
No 441
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=49.21 E-value=58 Score=38.44 Aligned_cols=24 Identities=25% Similarity=0.466 Sum_probs=21.1
Q ss_pred CCccccCCCcchhhhhhhhhcccc
Q psy1205 329 MPAVTSGSAPLGGIQALRITRQDL 352 (868)
Q Consensus 329 ~p~~~~g~~~~g~~~a~~~~~~g~ 352 (868)
+..+++|.|.+|+.+|..+++.|+
T Consensus 213 ~dVvIIGgGpAGl~AA~~la~~G~ 236 (515)
T TIGR03140 213 YDVLVVGGGPAGAAAAIYAARKGL 236 (515)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCC
Confidence 455689999999999999999997
No 442
>KOG2665|consensus
Probab=48.89 E-value=12 Score=40.08 Aligned_cols=37 Identities=35% Similarity=0.667 Sum_probs=31.0
Q ss_pred CCCCcceEEecCCCccceeecccc-cCCCceEEEecCC
Q psy1205 136 PDRDYDFIVIGGGSSGAVVANRLS-EVPNWRVLLIEAG 172 (868)
Q Consensus 136 ~~~~~d~vi~g~G~~G~~~a~~ls-~~~~~~v~l~~ag 172 (868)
...+||.||||+|..|...|-+|+ +.|.++|.++|+-
T Consensus 45 s~~~~D~VvvGgGiVGlAsARel~lrhp~l~V~vleke 82 (453)
T KOG2665|consen 45 SKERYDLVVVGGGIVGLASARELSLRHPSLKVAVLEKE 82 (453)
T ss_pred ccccccEEEECCceeehhhhHHHhhcCCCceEEeeehh
Confidence 345799999999999999888876 4588999999964
No 443
>COG1233 Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=48.86 E-value=21 Score=41.79 Aligned_cols=33 Identities=33% Similarity=0.572 Sum_probs=29.6
Q ss_pred CcceEEecCCCccceeecccccCCCceEEEecCC
Q psy1205 139 DYDFIVIGGGSSGAVVANRLSEVPNWRVLLIEAG 172 (868)
Q Consensus 139 ~~d~vi~g~G~~G~~~a~~ls~~~~~~v~l~~ag 172 (868)
.+|.||||+|..|-..|..|+. .+++|.|+|+.
T Consensus 3 ~~dvvVIGaG~~GL~aAa~LA~-~G~~V~VlE~~ 35 (487)
T COG1233 3 MYDVVVIGAGLNGLAAAALLAR-AGLKVTVLEKN 35 (487)
T ss_pred CccEEEECCChhHHHHHHHHHh-CCCEEEEEEec
Confidence 5899999999999999999995 68899999954
No 444
>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated
Probab=48.57 E-value=8.7 Score=43.47 Aligned_cols=34 Identities=32% Similarity=0.541 Sum_probs=30.0
Q ss_pred CCcceEEecCCCccceeecccccCCCceEEEecCC
Q psy1205 138 RDYDFIVIGGGSSGAVVANRLSEVPNWRVLLIEAG 172 (868)
Q Consensus 138 ~~~d~vi~g~G~~G~~~a~~ls~~~~~~v~l~~ag 172 (868)
..+|++|+|+|.+|...|..|+. .+.+|+|+|..
T Consensus 5 ~~~dV~IvGaG~aGl~~A~~La~-~G~~v~liE~~ 38 (392)
T PRK08773 5 SRRDAVIVGGGVVGAACALALAD-AGLSVALVEGR 38 (392)
T ss_pred CCCCEEEECcCHHHHHHHHHHhc-CCCEEEEEeCC
Confidence 45899999999999999999985 57899999976
No 445
>PRK10262 thioredoxin reductase; Provisional
Probab=48.52 E-value=72 Score=34.87 Aligned_cols=34 Identities=12% Similarity=0.207 Sum_probs=29.7
Q ss_pred CcceEEEECCCchhhhHHhhhhccCcccccccCCC
Q psy1205 60 RDYDFIVIGGGSSGAVVANRLSEMNTCNCPVTQPG 94 (868)
Q Consensus 60 ~~~d~~~~g~~~~~~~~a~~~~~~~~~~~LvlE~G 94 (868)
..+|++|||||+||+.+|..|.+. +.+|+|+|+.
T Consensus 5 ~~~~vvIIGgGpaGl~aA~~l~~~-g~~~~~ie~~ 38 (321)
T PRK10262 5 KHSKLLILGSGPAGYTAAVYAARA-NLQPVLITGM 38 (321)
T ss_pred CcCCEEEECCCHHHHHHHHHHHHC-CCCeEEEEee
Confidence 468999999999999999999875 5689999854
No 446
>PLN02463 lycopene beta cyclase
Probab=47.22 E-value=8 Score=44.68 Aligned_cols=41 Identities=17% Similarity=0.063 Sum_probs=32.6
Q ss_pred CCcEEeccCCCCCCCCccchHHHHHHHHHHHHHHHHHhccc
Q psy1205 822 DRLRVVDCSIMPAVTSGNTNAPAIMIAEKASDLIKQQWIGK 862 (868)
Q Consensus 822 ~nL~V~DaSv~P~~~~~NP~~Ti~alAeraAd~I~~~~~~~ 862 (868)
+-+.|-||+-+....++--...++.-|..+|+.|.+.+...
T Consensus 295 ~~~~~G~aag~v~p~tG~~i~~~~~~~~~~a~~~~~~~~~~ 335 (447)
T PLN02463 295 RVLGIGGTAGMVHPSTGYMVARTLAAAPIVADAIVEYLGSS 335 (447)
T ss_pred CEEEecchhcCcCCCccccHHHHHHHHHHHHHHHHHHHhcC
Confidence 34678888888888888888888888888888888777643
No 447
>PRK08013 oxidoreductase; Provisional
Probab=47.04 E-value=8.7 Score=43.68 Aligned_cols=34 Identities=32% Similarity=0.487 Sum_probs=29.8
Q ss_pred CcceEEecCCCccceeecccccCCCceEEEecCCC
Q psy1205 139 DYDFIVIGGGSSGAVVANRLSEVPNWRVLLIEAGG 173 (868)
Q Consensus 139 ~~d~vi~g~G~~G~~~a~~ls~~~~~~v~l~~ag~ 173 (868)
.+|++|+|+|.+|...|..|+. .+.+|+|+|..+
T Consensus 3 ~~dV~IvGaGpaGl~~A~~La~-~G~~v~viE~~~ 36 (400)
T PRK08013 3 SVDVVIAGGGMVGLAVACGLQG-SGLRVAVLEQRV 36 (400)
T ss_pred cCCEEEECcCHHHHHHHHHHhh-CCCEEEEEeCCC
Confidence 4789999999999999999985 578999999763
No 448
>PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional
Probab=47.01 E-value=7.9 Score=43.63 Aligned_cols=34 Identities=35% Similarity=0.645 Sum_probs=29.8
Q ss_pred CcceEEecCCCccceeecccccCCCceEEEecCCC
Q psy1205 139 DYDFIVIGGGSSGAVVANRLSEVPNWRVLLIEAGG 173 (868)
Q Consensus 139 ~~d~vi~g~G~~G~~~a~~ls~~~~~~v~l~~ag~ 173 (868)
.+|.+|+|+|.+|...|..|+. .+.+|+|+|..+
T Consensus 5 ~~dv~IvGgG~aGl~~A~~L~~-~G~~v~v~E~~~ 38 (388)
T PRK07608 5 KFDVVVVGGGLVGASLALALAQ-SGLRVALLAPRA 38 (388)
T ss_pred cCCEEEECcCHHHHHHHHHHHh-CCCeEEEEecCC
Confidence 4789999999999999999985 578999999763
No 449
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=46.26 E-value=13 Score=42.26 Aligned_cols=34 Identities=21% Similarity=0.494 Sum_probs=30.5
Q ss_pred eEEEECCCchhhhHHhhhhccCcccccccCCCCCc
Q psy1205 63 DFIVIGGGSSGAVVANRLSEMNTCNCPVTQPGPTL 97 (868)
Q Consensus 63 d~~~~g~~~~~~~~a~~~~~~~~~~~LvlE~G~~L 97 (868)
.++|||||..|+-+|..|++. +.+|-|+|++..+
T Consensus 146 ~vvViGgG~ig~E~A~~l~~~-g~~Vtlv~~~~~~ 179 (396)
T PRK09754 146 SVVIVGAGTIGLELAASATQR-RCKVTVIELAATV 179 (396)
T ss_pred eEEEECCCHHHHHHHHHHHHc-CCeEEEEecCCcc
Confidence 589999999999999999875 6799999999874
No 450
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=45.62 E-value=13 Score=43.16 Aligned_cols=35 Identities=23% Similarity=0.503 Sum_probs=30.6
Q ss_pred eEEEECCCchhhhHHhhhhccCcccccccCCCCCcc
Q psy1205 63 DFIVIGGGSSGAVVANRLSEMNTCNCPVTQPGPTLA 98 (868)
Q Consensus 63 d~~~~g~~~~~~~~a~~~~~~~~~~~LvlE~G~~LG 98 (868)
.++|||||.+|+-+|..|+.. +.+|.|+|+++.+.
T Consensus 172 ~vvIIGgG~iG~E~A~~l~~~-g~~Vtli~~~~~ll 206 (458)
T PRK06912 172 SLLIVGGGVIGCEFASIYSRL-GTKVTIVEMAPQLL 206 (458)
T ss_pred cEEEECCCHHHHHHHHHHHHc-CCeEEEEecCCCcC
Confidence 589999999999999999874 67999999998753
No 451
>TIGR01989 COQ6 Ubiquinone biosynthesis mono0xygenase COQ6. This model represents the monooxygenase responsible for the 4-hydroxylateion of the phenol ring in the aerobic biosynthesis of ubiquinone
Probab=45.37 E-value=9 Score=44.17 Aligned_cols=33 Identities=33% Similarity=0.706 Sum_probs=28.8
Q ss_pred cceEEecCCCccceeecccccC---CCceEEEecCC
Q psy1205 140 YDFIVIGGGSSGAVVANRLSEV---PNWRVLLIEAG 172 (868)
Q Consensus 140 ~d~vi~g~G~~G~~~a~~ls~~---~~~~v~l~~ag 172 (868)
||++|+|+|.+|...|..|+.. .+.+|.|+|+.
T Consensus 1 ~DV~IVGaGp~Gl~~A~~La~~~~~~G~~v~viE~~ 36 (437)
T TIGR01989 1 FDVVIVGGGPVGLALAAALGNNPLTKDLKVLLLDAV 36 (437)
T ss_pred CcEEEECCcHHHHHHHHHHhcCcccCCCeEEEEeCC
Confidence 6899999999999999999852 47899999974
No 452
>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=45.05 E-value=52 Score=37.37 Aligned_cols=54 Identities=28% Similarity=0.273 Sum_probs=36.9
Q ss_pred hhhccCCCCeEEEccceEeEEEEcCCCCeEEEEEEEECCeEEEEEeccEEEEccCCcC
Q psy1205 510 LRPIISRNNLHILLNTTVTRVIVDPLTKAAIGVEFLTNGRLERLQAKNEVIVCAGAVD 567 (868)
Q Consensus 510 L~~~~~~~nl~I~~~~~V~rIl~d~~~~~a~GV~~~~~g~~~~v~A~k~VILAAGai~ 567 (868)
+..+.+.+|++++.++.|++|..+ ++.+ .|.+..++...+++|+ -||.|-|.-.
T Consensus 128 ~~~~~~~~~v~i~~~~~v~~v~~~--~~~~-~v~~~~~~~~~~i~ad-lvIgADG~~S 181 (415)
T PRK07364 128 QEFLQSCPNITWLCPAEVVSVEYQ--QDAA-TVTLEIEGKQQTLQSK-LVVAADGARS 181 (415)
T ss_pred HHHHhcCCCcEEEcCCeeEEEEec--CCee-EEEEccCCcceEEeee-EEEEeCCCCc
Confidence 333444578999999999999776 3332 3555545555678995 7888888644
No 453
>PRK06126 hypothetical protein; Provisional
Probab=44.83 E-value=58 Score=38.71 Aligned_cols=56 Identities=14% Similarity=0.203 Sum_probs=38.3
Q ss_pred hhhhhc-cCCCCeEEEccceEeEEEEcCCCCeEEEEEEEE--CCeEEEEEeccEEEEccCCcC
Q psy1205 508 AFLRPI-ISRNNLHILLNTTVTRVIVDPLTKAAIGVEFLT--NGRLERLQAKNEVIVCAGAVD 567 (868)
Q Consensus 508 ~~L~~~-~~~~nl~I~~~~~V~rIl~d~~~~~a~GV~~~~--~g~~~~v~A~k~VILAAGai~ 567 (868)
..|... .+.+|++|+.+++|+++..+ ++.++ |.+.+ +|+..+++++ -||.|.|+-.
T Consensus 130 ~~L~~~~~~~~~v~i~~~~~v~~i~~~--~~~v~-v~~~~~~~g~~~~i~ad-~vVgADG~~S 188 (545)
T PRK06126 130 PILLEHAAAQPGVTLRYGHRLTDFEQD--ADGVT-ATVEDLDGGESLTIRAD-YLVGCDGARS 188 (545)
T ss_pred HHHHHHHHhCCCceEEeccEEEEEEEC--CCeEE-EEEEECCCCcEEEEEEE-EEEecCCcch
Confidence 344333 34578999999999999877 34444 44443 5767789995 7888888643
No 454
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=44.72 E-value=13 Score=43.26 Aligned_cols=35 Identities=20% Similarity=0.442 Sum_probs=30.8
Q ss_pred ceEEEECCCchhhhHHhhhhccCcccccccCCCCCc
Q psy1205 62 YDFIVIGGGSSGAVVANRLSEMNTCNCPVTQPGPTL 97 (868)
Q Consensus 62 ~d~~~~g~~~~~~~~a~~~~~~~~~~~LvlE~G~~L 97 (868)
-.++|||||.+|+-+|..|++. +.+|.|||+++.+
T Consensus 181 ~~vvIIGgG~~G~E~A~~l~~~-g~~Vtli~~~~~i 215 (472)
T PRK05976 181 KSLVIVGGGVIGLEWASMLADF-GVEVTVVEAADRI 215 (472)
T ss_pred CEEEEECCCHHHHHHHHHHHHc-CCeEEEEEecCcc
Confidence 3689999999999999999975 6899999999864
No 455
>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=44.69 E-value=9.9 Score=43.21 Aligned_cols=33 Identities=30% Similarity=0.615 Sum_probs=29.1
Q ss_pred CcceEEecCCCccceeecccccCCCceEEEecCC
Q psy1205 139 DYDFIVIGGGSSGAVVANRLSEVPNWRVLLIEAG 172 (868)
Q Consensus 139 ~~d~vi~g~G~~G~~~a~~ls~~~~~~v~l~~ag 172 (868)
.+|++|+|+|.+|...|..|+. .+.+|.|+|..
T Consensus 2 ~~dV~IVGaG~aGl~~A~~L~~-~G~~v~viE~~ 34 (405)
T PRK05714 2 RADLLIVGAGMVGSALALALQG-SGLEVLLLDGG 34 (405)
T ss_pred CccEEEECccHHHHHHHHHHhc-CCCEEEEEcCC
Confidence 3689999999999999999985 57899999976
No 456
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=44.37 E-value=14 Score=46.43 Aligned_cols=34 Identities=21% Similarity=0.311 Sum_probs=0.0
Q ss_pred eEEEECCCchhhhHHhhhhcc---CcccccccCCCCC
Q psy1205 63 DFIVIGGGSSGAVVANRLSEM---NTCNCPVTQPGPT 96 (868)
Q Consensus 63 d~~~~g~~~~~~~~a~~~~~~---~~~~~LvlE~G~~ 96 (868)
.++|||+|.||..+|.+|.+. .+++|.|+++.+.
T Consensus 5 kIVIVG~G~AG~~aa~~L~~~~~~~~~~Itvi~~e~~ 41 (847)
T PRK14989 5 RLAIIGNGMVGHRFIEDLLDKADAANFDITVFCEEPR 41 (847)
T ss_pred cEEEECCCHHHHHHHHHHHhhCCCCCCeEEEEECCCC
No 457
>TIGR01790 carotene-cycl lycopene cyclase family protein. This family includes lycopene beta and epsilion cyclases (which form beta and delta carotene, respectively) from bacteria and plants as well as the plant capsanthin/capsorubin and neoxanthin cyclases which appear to have evolved from the plant lycopene cyclases. The plant lycopene epsilon cyclases also transform neurosporene to alpha zeacarotene.
Probab=44.32 E-value=9.2 Score=43.16 Aligned_cols=31 Identities=48% Similarity=0.783 Sum_probs=27.5
Q ss_pred ceEEecCCCccceeecccccCCCceEEEecCC
Q psy1205 141 DFIVIGGGSSGAVVANRLSEVPNWRVLLIEAG 172 (868)
Q Consensus 141 d~vi~g~G~~G~~~a~~ls~~~~~~v~l~~ag 172 (868)
|+||+|+|.+|...|..++. .+.+|+|+|+.
T Consensus 1 DviIiGaG~AGl~~A~~la~-~g~~v~liE~~ 31 (388)
T TIGR01790 1 DLAVIGGGPAGLAIALELAR-PGLRVQLIEPH 31 (388)
T ss_pred CEEEECCCHHHHHHHHHHHh-CCCeEEEEccC
Confidence 68999999999999988874 57899999976
No 458
>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype.
Probab=43.95 E-value=11 Score=42.35 Aligned_cols=33 Identities=39% Similarity=0.626 Sum_probs=28.2
Q ss_pred ceEEecCCCccceeecccccCCCceEEEecCCC
Q psy1205 141 DFIVIGGGSSGAVVANRLSEVPNWRVLLIEAGG 173 (868)
Q Consensus 141 d~vi~g~G~~G~~~a~~ls~~~~~~v~l~~ag~ 173 (868)
|.+|+|+|.+|...|..|+..++.+|+|+|..+
T Consensus 1 dv~IvGaG~aGl~~A~~L~~~G~~~v~v~E~~~ 33 (382)
T TIGR01984 1 DVIIVGGGLVGLSLALALSRLGKIKIALIEANS 33 (382)
T ss_pred CEEEECccHHHHHHHHHHhcCCCceEEEEeCCC
Confidence 679999999999999999864338999999763
No 459
>KOG4405|consensus
Probab=43.82 E-value=19 Score=40.05 Aligned_cols=38 Identities=18% Similarity=0.303 Sum_probs=34.1
Q ss_pred CcceEEEECCCchhhhHHhhhhccCcccccccCCCCCcc
Q psy1205 60 RDYDFIVIGGGSSGAVVANRLSEMNTCNCPVTQPGPTLA 98 (868)
Q Consensus 60 ~~~d~~~~g~~~~~~~~a~~~~~~~~~~~LvlE~G~~LG 98 (868)
.+||+||||.|..=+++|+.-|.. +.+||=|++-.-.|
T Consensus 7 ~~fDvVViGTGlpESilAAAcSrs-G~sVLHlDsn~yYG 44 (547)
T KOG4405|consen 7 EEFDVVVIGTGLPESILAAACSRS-GSSVLHLDSNEYYG 44 (547)
T ss_pred hhccEEEEcCCCcHHHHHHHhhhc-CCceEeccCccccC
Confidence 579999999999999999999976 78999999987755
No 460
>KOG0029|consensus
Probab=43.59 E-value=7.2 Score=45.59 Aligned_cols=32 Identities=16% Similarity=0.147 Sum_probs=28.2
Q ss_pred cccCCCcchhhhhhhhhcccccchhhhhhhhhhccc
Q psy1205 332 VTSGSAPLGGIQALRITRQDLVRWDQHLILALSCHR 367 (868)
Q Consensus 332 ~~~g~~~~g~~~a~~~~~~g~~~~~~~~~~~~~~~~ 367 (868)
+++|.|++|+.+|..|.+.|. +|.|+|..+-.
T Consensus 19 IVIGAGiaGLsAArqL~~~G~----~V~VLEARdRv 50 (501)
T KOG0029|consen 19 IVIGAGLAGLSAARQLQDFGF----DVLVLEARDRV 50 (501)
T ss_pred EEECCcHHHHHHHHHHHHcCC----ceEEEeccCCc
Confidence 689999999999999999998 48899888633
No 461
>PRK11883 protoporphyrinogen oxidase; Reviewed
Probab=43.57 E-value=6.7 Score=45.17 Aligned_cols=33 Identities=18% Similarity=0.123 Sum_probs=26.8
Q ss_pred ccccCCCcchhhhhhhhhcccccchhhhhhhhhhc
Q psy1205 331 AVTSGSAPLGGIQALRITRQDLVRWDQHLILALSC 365 (868)
Q Consensus 331 ~~~~g~~~~g~~~a~~~~~~g~~~~~~~~~~~~~~ 365 (868)
.+++|.|++|..+|.+|+++|.. .++.++|+.+
T Consensus 3 v~IVGaGiaGL~aA~~L~~~G~~--~~V~vlEa~~ 35 (451)
T PRK11883 3 VAIIGGGITGLSAAYRLHKKGPD--ADITLLEASD 35 (451)
T ss_pred EEEECCCHHHHHHHHHHHHhCCC--CCEEEEEcCC
Confidence 35799999999999999998820 1588888876
No 462
>KOG1800|consensus
Probab=43.52 E-value=19 Score=39.81 Aligned_cols=34 Identities=18% Similarity=0.340 Sum_probs=30.7
Q ss_pred eEEEECCCchhhhHHhhhhc-cCcccccccCCCCC
Q psy1205 63 DFIVIGGGSSGAVVANRLSE-MNTCNCPVTQPGPT 96 (868)
Q Consensus 63 d~~~~g~~~~~~~~a~~~~~-~~~~~~LvlE~G~~ 96 (868)
-+.|||+|+||+-+|..|-. .++++|-+.|.-+.
T Consensus 22 ~vcIVGsGPAGfYtA~~LLk~~~~~~Vdi~Ek~Pv 56 (468)
T KOG1800|consen 22 RVCIVGSGPAGFYTAQHLLKRHPNAHVDIFEKLPV 56 (468)
T ss_pred eEEEECCCchHHHHHHHHHhcCCCCeeEeeecCCc
Confidence 58999999999999999976 57799999999987
No 463
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=43.27 E-value=45 Score=38.86 Aligned_cols=59 Identities=17% Similarity=0.201 Sum_probs=42.9
Q ss_pred CCCCeEEEccceEeEEEEcCCCCeEEEEEEEE-----------CCeEEEEEeccEEEEccCCcCc-hHHHHhcC
Q psy1205 515 SRNNLHILLNTTVTRVIVDPLTKAAIGVEFLT-----------NGRLERLQAKNEVIVCAGAVDS-PRILLLSG 576 (868)
Q Consensus 515 ~~~nl~I~~~~~V~rIl~d~~~~~a~GV~~~~-----------~g~~~~v~A~k~VILAAGai~S-P~LLl~SG 576 (868)
+..++++++++.+++|.-+ ++++++|++.+ .+...++.++ .||+|.|..-. ..||...|
T Consensus 340 ~~~GV~i~~~~~~~~i~~~--~g~v~~V~~~~~~~~~g~~~~~~g~~~~i~~D-~VI~A~G~~p~~~~l~~~~g 410 (471)
T PRK12810 340 HEEGVEREFNVQTKEFEGE--NGKVTGVKVVRTELGEGDFEPVEGSEFVLPAD-LVLLAMGFTGPEAGLLAQFG 410 (471)
T ss_pred HHcCCeEEeccCceEEEcc--CCEEEEEEEEEEEecCCCccccCCceEEEECC-EEEECcCcCCCchhhccccC
Confidence 3468999999999999643 67899988752 2456788886 89999995543 44554444
No 464
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit.
Probab=43.18 E-value=13 Score=46.23 Aligned_cols=33 Identities=12% Similarity=0.374 Sum_probs=0.0
Q ss_pred EEEECCCchhhhHHhhhhcc--CcccccccCCCCC
Q psy1205 64 FIVIGGGSSGAVVANRLSEM--NTCNCPVTQPGPT 96 (868)
Q Consensus 64 ~~~~g~~~~~~~~a~~~~~~--~~~~~LvlE~G~~ 96 (868)
++|||+|.||..+|.+|.+. .+++|.|||+.+.
T Consensus 1 iVIIG~G~AG~~aa~~l~~~~~~~~~Itvi~~e~~ 35 (785)
T TIGR02374 1 LVLVGNGMAGHRCIEEVLKLNRHMFEITIFGEEPH 35 (785)
T ss_pred CEEECCCHHHHHHHHHHHhcCCCCCeEEEEeCCCC
No 465
>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=42.83 E-value=11 Score=42.61 Aligned_cols=33 Identities=33% Similarity=0.485 Sum_probs=29.3
Q ss_pred CcceEEecCCCccceeecccccCCCceEEEecCC
Q psy1205 139 DYDFIVIGGGSSGAVVANRLSEVPNWRVLLIEAG 172 (868)
Q Consensus 139 ~~d~vi~g~G~~G~~~a~~ls~~~~~~v~l~~ag 172 (868)
.+|++|+|+|.+|...|..|+. .+.+|+|+|..
T Consensus 7 ~~dViIVGaG~~Gl~~A~~L~~-~G~~v~liE~~ 39 (388)
T PRK07494 7 HTDIAVIGGGPAGLAAAIALAR-AGASVALVAPE 39 (388)
T ss_pred CCCEEEECcCHHHHHHHHHHhc-CCCeEEEEeCC
Confidence 5799999999999999999985 57899999975
No 466
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=42.59 E-value=15 Score=42.24 Aligned_cols=34 Identities=24% Similarity=0.410 Sum_probs=30.2
Q ss_pred eEEEECCCchhhhHHhhhhccCcccccccCCCCCc
Q psy1205 63 DFIVIGGGSSGAVVANRLSEMNTCNCPVTQPGPTL 97 (868)
Q Consensus 63 d~~~~g~~~~~~~~a~~~~~~~~~~~LvlE~G~~L 97 (868)
.++|||||.+|+-+|..|++. +.+|.|+||+..+
T Consensus 159 ~vvIIGgG~~g~e~A~~l~~~-g~~Vtli~~~~~~ 192 (438)
T PRK07251 159 RLGIIGGGNIGLEFAGLYNKL-GSKVTVLDAASTI 192 (438)
T ss_pred eEEEECCCHHHHHHHHHHHHc-CCeEEEEecCCcc
Confidence 479999999999999999874 6799999999874
No 467
>KOG1298|consensus
Probab=42.54 E-value=15 Score=40.71 Aligned_cols=39 Identities=36% Similarity=0.572 Sum_probs=31.5
Q ss_pred CCCcceEEecCCCccceeecccccCCCceEEEecCCCCCC
Q psy1205 137 DRDYDFIVIGGGSSGAVVANRLSEVPNWRVLLIEAGGDEP 176 (868)
Q Consensus 137 ~~~~d~vi~g~G~~G~~~a~~ls~~~~~~v~l~~ag~~~~ 176 (868)
..+.|.||+|+|.+|+.+|.-|+. .+.+|.|+|..=.++
T Consensus 43 ~~~~DvIIVGAGV~GsaLa~~L~k-dGRrVhVIERDl~EP 81 (509)
T KOG1298|consen 43 DGAADVIIVGAGVAGSALAYALAK-DGRRVHVIERDLSEP 81 (509)
T ss_pred CCcccEEEECCcchHHHHHHHHhh-CCcEEEEEecccccc
Confidence 346899999999999999999985 456999999764443
No 468
>PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated
Probab=42.28 E-value=55 Score=36.98 Aligned_cols=50 Identities=12% Similarity=0.051 Sum_probs=34.8
Q ss_pred CCCCeEEEccceEeEEEEcCCCCeEEEEEEEECCeEEEEEeccEEEEccCCcCc
Q psy1205 515 SRNNLHILLNTTVTRVIVDPLTKAAIGVEFLTNGRLERLQAKNEVIVCAGAVDS 568 (868)
Q Consensus 515 ~~~nl~I~~~~~V~rIl~d~~~~~a~GV~~~~~g~~~~v~A~k~VILAAGai~S 568 (868)
...+++++.+++|+++... ++....|.+..+|+..+++|+ +|++|-+.+|
T Consensus 114 ~~~gv~v~~~~~v~~i~~~--~~~~~~V~~~~~G~~~~i~ad--~vVgADG~~S 163 (392)
T PRK08243 114 LAAGGPIRFEASDVALHDF--DSDRPYVTYEKDGEEHRLDCD--FIAGCDGFHG 163 (392)
T ss_pred HhCCCeEEEeeeEEEEEec--CCCceEEEEEcCCeEEEEEeC--EEEECCCCCC
Confidence 4568999999999998752 122345666557877889995 5555555665
No 469
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=42.19 E-value=16 Score=35.60 Aligned_cols=31 Identities=23% Similarity=0.304 Sum_probs=26.1
Q ss_pred EEEECCCchhhhHHhhhhccCcccccccCCCC
Q psy1205 64 FIVIGGGSSGAVVANRLSEMNTCNCPVTQPGP 95 (868)
Q Consensus 64 ~~~~g~~~~~~~~a~~~~~~~~~~~LvlE~G~ 95 (868)
+.|+|+|..|+.+|.-|+++ +.+|.|..|-.
T Consensus 2 I~ViGaG~~G~AlA~~la~~-g~~V~l~~~~~ 32 (157)
T PF01210_consen 2 IAVIGAGNWGTALAALLADN-GHEVTLWGRDE 32 (157)
T ss_dssp EEEESSSHHHHHHHHHHHHC-TEEEEEETSCH
T ss_pred EEEECcCHHHHHHHHHHHHc-CCEEEEEeccH
Confidence 46899999999999999997 47888876644
No 470
>TIGR03197 MnmC_Cterm tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain. In Escherichia coli, the protein previously designated YfcK is now identified as the bifunctional enzyme MnmC. It acts, following the action of the heterotetramer of GidA and MnmE, in the modification of U-34 of certain tRNA to 5-methylaminomethyl-2-thiouridine (mnm5s2U). In other bacterial, the corresponding proteins are usually but always found as a single polypeptide chain, but occasionally as the product of tandem genes. This model represents the C-terminal region of the multifunctional protein.
Probab=42.06 E-value=57 Score=36.65 Aligned_cols=49 Identities=24% Similarity=0.262 Sum_probs=33.0
Q ss_pred hhhccCCCCeEEEccceEeEEEEcCCCCeEEEEEEEECCeEEEEEeccEEEEccCCc
Q psy1205 510 LRPIISRNNLHILLNTTVTRVIVDPLTKAAIGVEFLTNGRLERLQAKNEVIVCAGAV 566 (868)
Q Consensus 510 L~~~~~~~nl~I~~~~~V~rIl~d~~~~~a~GV~~~~~g~~~~v~A~k~VILAAGai 566 (868)
|..+.++ +++|+.++.|+.|..+ +++ ..|+. .+|. .++|+ .||+|+|+.
T Consensus 141 l~~~~~~-G~~i~~~~~V~~i~~~--~~~-~~v~t-~~g~--~~~a~-~vV~a~G~~ 189 (381)
T TIGR03197 141 LLAHAGI-RLTLHFNTEITSLERD--GEG-WQLLD-ANGE--VIAAS-VVVLANGAQ 189 (381)
T ss_pred HHhccCC-CcEEEeCCEEEEEEEc--CCe-EEEEe-CCCC--EEEcC-EEEEcCCcc
Confidence 3344456 8999999999999875 333 23322 2442 36785 799999965
No 471
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=42.04 E-value=64 Score=35.35 Aligned_cols=24 Identities=21% Similarity=0.450 Sum_probs=21.3
Q ss_pred CCccccCCCcchhhhhhhhhcccc
Q psy1205 329 MPAVTSGSAPLGGIQALRITRQDL 352 (868)
Q Consensus 329 ~p~~~~g~~~~g~~~a~~~~~~g~ 352 (868)
|..+++|.|.+|+.+|...|+.|+
T Consensus 212 yDVLvVGgGPAgaaAAiYaARKGi 235 (520)
T COG3634 212 YDVLVVGGGPAGAAAAIYAARKGI 235 (520)
T ss_pred ceEEEEcCCcchhHHHHHHHhhcc
Confidence 445789999999999999999998
No 472
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=41.98 E-value=15 Score=42.14 Aligned_cols=35 Identities=31% Similarity=0.776 Sum_probs=30.1
Q ss_pred eEEEECCCchhhhHHhhhhcc-------------CcccccccCCCCCc
Q psy1205 63 DFIVIGGGSSGAVVANRLSEM-------------NTCNCPVTQPGPTL 97 (868)
Q Consensus 63 d~~~~g~~~~~~~~a~~~~~~-------------~~~~~LvlE~G~~L 97 (868)
.++|||||.+|+-+|..|++- ++.+|-|+|+++.+
T Consensus 175 ~vvVvGgG~~GvE~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~~~l 222 (424)
T PTZ00318 175 HFVVVGGGPTGVEFAAELADFFRDDVRNLNPELVEECKVTVLEAGSEV 222 (424)
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHHHhhhhcccccCEEEEEcCCCcc
Confidence 689999999999999998762 35789999999864
No 473
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=41.92 E-value=16 Score=42.34 Aligned_cols=34 Identities=12% Similarity=0.229 Sum_probs=30.3
Q ss_pred eEEEECCCchhhhHHhhhhccCcccccccCCCCCc
Q psy1205 63 DFIVIGGGSSGAVVANRLSEMNTCNCPVTQPGPTL 97 (868)
Q Consensus 63 d~~~~g~~~~~~~~a~~~~~~~~~~~LvlE~G~~L 97 (868)
.++|||||..|+-+|..|+.. +.+|-||||++.+
T Consensus 168 ~vvIIGgG~iG~E~A~~l~~~-g~~Vtli~~~~~i 201 (450)
T TIGR01421 168 RVVIVGAGYIAVELAGVLHGL-GSETHLVIRHERV 201 (450)
T ss_pred eEEEECCCHHHHHHHHHHHHc-CCcEEEEecCCCC
Confidence 579999999999999999975 6799999999864
No 474
>PRK06996 hypothetical protein; Provisional
Probab=41.47 E-value=13 Score=42.09 Aligned_cols=36 Identities=28% Similarity=0.538 Sum_probs=30.2
Q ss_pred CCCcceEEecCCCccceeecccccCC---CceEEEecCC
Q psy1205 137 DRDYDFIVIGGGSSGAVVANRLSEVP---NWRVLLIEAG 172 (868)
Q Consensus 137 ~~~~d~vi~g~G~~G~~~a~~ls~~~---~~~v~l~~ag 172 (868)
...+|++|+|+|.+|...|+.|+..+ +++|+|+|+.
T Consensus 9 ~~~~dv~IvGgGpaG~~~A~~L~~~g~~~g~~v~l~e~~ 47 (398)
T PRK06996 9 APDFDIAIVGAGPVGLALAGWLARRSATRALSIALIDAR 47 (398)
T ss_pred CCCCCEEEECcCHHHHHHHHHHhcCCCcCCceEEEecCC
Confidence 44689999999999999999998644 3679999976
No 475
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=41.40 E-value=17 Score=42.33 Aligned_cols=35 Identities=17% Similarity=0.294 Sum_probs=30.7
Q ss_pred eEEEECCCchhhhHHhhhhccCcccccccCCCCCcc
Q psy1205 63 DFIVIGGGSSGAVVANRLSEMNTCNCPVTQPGPTLA 98 (868)
Q Consensus 63 d~~~~g~~~~~~~~a~~~~~~~~~~~LvlE~G~~LG 98 (868)
.++|||||..|+-+|..|++. +.+|.|||+++.+.
T Consensus 176 ~vvIiGgG~iG~E~A~~l~~~-G~~Vtlv~~~~~il 210 (471)
T PRK06467 176 RLLVMGGGIIGLEMGTVYHRL-GSEVDVVEMFDQVI 210 (471)
T ss_pred eEEEECCCHHHHHHHHHHHHc-CCCEEEEecCCCCC
Confidence 579999999999999999875 67999999998743
No 476
>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]
Probab=41.34 E-value=17 Score=41.08 Aligned_cols=36 Identities=19% Similarity=0.322 Sum_probs=33.2
Q ss_pred ceEEEECCCchhhhHHhhhhccCcccccccCCCCCcc
Q psy1205 62 YDFIVIGGGSSGAVVANRLSEMNTCNCPVTQPGPTLA 98 (868)
Q Consensus 62 ~d~~~~g~~~~~~~~a~~~~~~~~~~~LvlE~G~~LG 98 (868)
-+.+|||+|..|+.+|..+.+. +.+|.|+|+...++
T Consensus 137 ~~v~vvG~G~~gle~A~~~~~~-G~~v~l~e~~~~~~ 172 (415)
T COG0446 137 KDVVVVGAGPIGLEAAEAAAKR-GKKVTLIEAADRLG 172 (415)
T ss_pred CeEEEECCcHHHHHHHHHHHHc-CCeEEEEEcccccc
Confidence 5899999999999999999987 69999999999876
No 477
>PRK09126 hypothetical protein; Provisional
Probab=40.75 E-value=11 Score=42.64 Aligned_cols=34 Identities=32% Similarity=0.526 Sum_probs=29.7
Q ss_pred CcceEEecCCCccceeecccccCCCceEEEecCCC
Q psy1205 139 DYDFIVIGGGSSGAVVANRLSEVPNWRVLLIEAGG 173 (868)
Q Consensus 139 ~~d~vi~g~G~~G~~~a~~ls~~~~~~v~l~~ag~ 173 (868)
.+|++|+|+|.+|...|+.|+. .+.+|+|+|..+
T Consensus 3 ~~dviIvGgG~aGl~~A~~L~~-~G~~v~v~E~~~ 36 (392)
T PRK09126 3 HSDIVVVGAGPAGLSFARSLAG-SGLKVTLIERQP 36 (392)
T ss_pred cccEEEECcCHHHHHHHHHHHh-CCCcEEEEeCCC
Confidence 4789999999999999999986 478999999763
No 478
>TIGR00031 UDP-GALP_mutase UDP-galactopyranose mutase. The gene is known as glf, ceoA, and rfbD. It is known experimentally in E. coli, Mycobacterium tuberculosis, and Klebsiella pneumoniae.
Probab=40.63 E-value=11 Score=42.30 Aligned_cols=32 Identities=47% Similarity=0.809 Sum_probs=28.0
Q ss_pred cceEEecCCCccceeecccccCCCceEEEecCC
Q psy1205 140 YDFIVIGGGSSGAVVANRLSEVPNWRVLLIEAG 172 (868)
Q Consensus 140 ~d~vi~g~G~~G~~~a~~ls~~~~~~v~l~~ag 172 (868)
+|++|+|+|.+|...|.+|+. .+.+|+|+|+.
T Consensus 2 ~DvvIIGaG~aGlsaA~~La~-~G~~V~viEk~ 33 (377)
T TIGR00031 2 FDYIIVGAGLSGIVLANILAQ-LNKRVLVVEKR 33 (377)
T ss_pred CcEEEECCCHHHHHHHHHHHh-CCCeEEEEecC
Confidence 588999999999999999985 46799999975
No 479
>PLN02697 lycopene epsilon cyclase
Probab=40.45 E-value=11 Score=44.38 Aligned_cols=42 Identities=14% Similarity=0.081 Sum_probs=32.8
Q ss_pred cCCcEEeccCCCCCCCCccchHHHHHHHHHHHHHHHHHhccc
Q psy1205 821 VDRLRVVDCSIMPAVTSGNTNAPAIMIAEKASDLIKQQWIGK 862 (868)
Q Consensus 821 v~nL~V~DaSv~P~~~~~NP~~Ti~alAeraAd~I~~~~~~~ 862 (868)
-+.|.|-|++=+-...++--...++.-|.++|+.|.+.++..
T Consensus 372 ~~vl~vG~AAG~vhPsTGy~v~~~l~~A~~~A~~ia~~l~~~ 413 (529)
T PLN02697 372 QKNLAFGAAASMVHPATGYSVVRSLSEAPKYASVIARILKNV 413 (529)
T ss_pred CCeeEeehhhcCCCCchhhhHHHHHHhHHHHHHHHHHHhhCC
Confidence 356778888888888888888888888888888888776544
No 480
>PRK07233 hypothetical protein; Provisional
Probab=40.27 E-value=36 Score=38.78 Aligned_cols=52 Identities=31% Similarity=0.356 Sum_probs=37.0
Q ss_pred cCCCCeEEEccceEeEEEEcCCCCeEEEEEEEECCeEEEEEeccEEEEccCCcCchHHH
Q psy1205 514 ISRNNLHILLNTTVTRVIVDPLTKAAIGVEFLTNGRLERLQAKNEVIVCAGAVDSPRIL 572 (868)
Q Consensus 514 ~~~~nl~I~~~~~V~rIl~d~~~~~a~GV~~~~~g~~~~v~A~k~VILAAGai~SP~LL 572 (868)
.+..+.+|++++.|++|..+ +++++++. .+++ ++.++ .||+|+..-..++||
T Consensus 208 l~~~g~~v~~~~~V~~i~~~--~~~~~~~~--~~~~--~~~ad-~vI~a~p~~~~~~ll 259 (434)
T PRK07233 208 IEARGGEIRLGTPVTSVVID--GGGVTGVE--VDGE--EEDFD-AVISTAPPPILARLV 259 (434)
T ss_pred HHhcCceEEeCCCeeEEEEc--CCceEEEE--eCCc--eEECC-EEEECCCHHHHHhhc
Confidence 34567899999999999886 45565554 3443 57785 799999876555544
No 481
>TIGR01423 trypano_reduc trypanothione-disulfide reductase. Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.
Probab=40.23 E-value=12 Score=43.92 Aligned_cols=34 Identities=29% Similarity=0.521 Sum_probs=29.5
Q ss_pred CCcceEEecCCCccceeecccccCCCceEEEecC
Q psy1205 138 RDYDFIVIGGGSSGAVVANRLSEVPNWRVLLIEA 171 (868)
Q Consensus 138 ~~~d~vi~g~G~~G~~~a~~ls~~~~~~v~l~~a 171 (868)
.+||.||+|+|.+|...|.++++..+.+|+|+|.
T Consensus 2 ~~~DviVIG~G~~G~~aA~~aa~~~g~~V~lie~ 35 (486)
T TIGR01423 2 KAFDLVVIGAGSGGLEAGWNAATLYKKRVAVIDV 35 (486)
T ss_pred CccCEEEECCChHHHHHHHHHHHhcCCEEEEEec
Confidence 3699999999999999999998643679999995
No 482
>PRK07846 mycothione reductase; Reviewed
Probab=40.17 E-value=18 Score=41.88 Aligned_cols=35 Identities=23% Similarity=0.374 Sum_probs=31.0
Q ss_pred ceEEEECCCchhhhHHhhhhccCcccccccCCCCCc
Q psy1205 62 YDFIVIGGGSSGAVVANRLSEMNTCNCPVTQPGPTL 97 (868)
Q Consensus 62 ~d~~~~g~~~~~~~~a~~~~~~~~~~~LvlE~G~~L 97 (868)
-.++|||||..|+-+|..|++. +.+|.|||+++.+
T Consensus 167 ~~vvIIGgG~iG~E~A~~l~~~-G~~Vtli~~~~~l 201 (451)
T PRK07846 167 ESLVIVGGGFIAAEFAHVFSAL-GVRVTVVNRSGRL 201 (451)
T ss_pred CeEEEECCCHHHHHHHHHHHHc-CCeEEEEEcCCcc
Confidence 3689999999999999999974 6899999999874
No 483
>TIGR02032 GG-red-SF geranylgeranyl reductase family. This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.
Probab=39.76 E-value=66 Score=34.17 Aligned_cols=53 Identities=25% Similarity=0.154 Sum_probs=35.4
Q ss_pred hhhhhccCCCCeEEEccceEeEEEEcCCCCeEEEEEEEECCeEEEEEeccEEEEccCCc
Q psy1205 508 AFLRPIISRNNLHILLNTTVTRVIVDPLTKAAIGVEFLTNGRLERLQAKNEVIVCAGAV 566 (868)
Q Consensus 508 ~~L~~~~~~~nl~I~~~~~V~rIl~d~~~~~a~GV~~~~~g~~~~v~A~k~VILAAGai 566 (868)
..|.....+.+++++.++.|+++..++ +.+ .|.+. ....+++|+ .||+|.|.-
T Consensus 95 ~~l~~~~~~~gv~~~~~~~v~~~~~~~--~~~-~~~~~--~~~~~~~a~-~vv~a~G~~ 147 (295)
T TIGR02032 95 EQLAERAQEAGAELRLGTTVLDVEIHD--DRV-VVIVR--GGEGTVTAK-IVIGADGSR 147 (295)
T ss_pred HHHHHHHHHcCCEEEeCcEEeeEEEeC--CEE-EEEEc--CccEEEEeC-EEEECCCcc
Confidence 344444456789999999999998873 332 22222 233467885 899999965
No 484
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=39.73 E-value=78 Score=36.61 Aligned_cols=57 Identities=19% Similarity=0.218 Sum_probs=41.1
Q ss_pred CCCCeEEEccceEeEEEEcCCCCeEEEEEEEE--------C---------CeEEEEEeccEEEEccCCcCchHHHH
Q psy1205 515 SRNNLHILLNTTVTRVIVDPLTKAAIGVEFLT--------N---------GRLERLQAKNEVIVCAGAVDSPRILL 573 (868)
Q Consensus 515 ~~~nl~I~~~~~V~rIl~d~~~~~a~GV~~~~--------~---------g~~~~v~A~k~VILAAGai~SP~LLl 573 (868)
+..|+++++++.++++.-+ +++++++|++.+ + +...++.++ .||+|.|-.-.+.+|.
T Consensus 320 ~~~GV~~~~~~~~~~i~~~-~~g~v~~v~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~D-~Vi~AiG~~p~~~~l~ 393 (449)
T TIGR01316 320 EEEGVKFHFLCQPVEIIGD-EEGNVRAVKFRKMDCQEQIDSGERRFLPCGDAECKLEAD-AVIVAIGNGSNPIMAE 393 (449)
T ss_pred HhCCCEEEeccCcEEEEEc-CCCeEEEEEEEEEEecCcCCCCCeeeeecCCceEEEECC-EEEECCCCCCCchhhh
Confidence 4579999999999999764 357888988752 2 234578886 8999999754444433
No 485
>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=38.74 E-value=14 Score=41.75 Aligned_cols=34 Identities=44% Similarity=0.591 Sum_probs=28.9
Q ss_pred CcceEEecCCCccceeecccccC--CCceEEEecCC
Q psy1205 139 DYDFIVIGGGSSGAVVANRLSEV--PNWRVLLIEAG 172 (868)
Q Consensus 139 ~~d~vi~g~G~~G~~~a~~ls~~--~~~~v~l~~ag 172 (868)
.+|.+|+|+|.+|...|..|+.. .+.+|+|+|..
T Consensus 3 ~~dv~IvGaG~aGl~~A~~L~~~~~~G~~v~v~E~~ 38 (395)
T PRK05732 3 RMDVIIVGGGMAGATLALALSRLSHGGLPVALIEAF 38 (395)
T ss_pred cCCEEEECcCHHHHHHHHHhhhcccCCCEEEEEeCC
Confidence 47899999999999999999743 37899999963
No 486
>KOG2820|consensus
Probab=38.59 E-value=18 Score=39.38 Aligned_cols=61 Identities=18% Similarity=0.138 Sum_probs=40.9
Q ss_pred hhhccCCCCeEEEccceEeEEEEcCCCCeEEEEEEEECCeEEEEEeccEEEEccCCcCchHHHHhc
Q psy1205 510 LRPIISRNNLHILLNTTVTRVIVDPLTKAAIGVEFLTNGRLERLQAKNEVIVCAGAVDSPRILLLS 575 (868)
Q Consensus 510 L~~~~~~~nl~I~~~~~V~rIl~d~~~~~a~GV~~~~~g~~~~v~A~k~VILAAGai~SP~LLl~S 575 (868)
+...++..++.++.+..|+.+.++++.+..++|.-+ +|. .+.|+ .+|+++|+. +.+||-.|
T Consensus 159 ~~~~~~~~G~i~~dg~~v~~~~~~~e~~~~v~V~Tt-~gs--~Y~ak-kiI~t~GaW-i~klL~~~ 219 (399)
T KOG2820|consen 159 LQDKARELGVIFRDGEKVKFIKFVDEEGNHVSVQTT-DGS--IYHAK-KIIFTVGAW-INKLLPTS 219 (399)
T ss_pred HHHHHHHcCeEEecCcceeeEeeccCCCceeEEEec-cCC--eeecc-eEEEEecHH-HHhhcCcc
Confidence 334445678999999999999987555555555432 332 35674 699999986 44555543
No 487
>PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=38.09 E-value=14 Score=41.64 Aligned_cols=32 Identities=19% Similarity=0.386 Sum_probs=28.3
Q ss_pred cceEEecCCCccceeecccccCCCceEEEecCC
Q psy1205 140 YDFIVIGGGSSGAVVANRLSEVPNWRVLLIEAG 172 (868)
Q Consensus 140 ~d~vi~g~G~~G~~~a~~ls~~~~~~v~l~~ag 172 (868)
+|.+|+|+|.+|...|..|+. .+++|.|+|..
T Consensus 2 ~dV~IvGgG~~Gl~~A~~L~~-~G~~v~l~E~~ 33 (374)
T PRK06617 2 SNTVILGCGLSGMLTALSFAQ-KGIKTTIFESK 33 (374)
T ss_pred ccEEEECCCHHHHHHHHHHHc-CCCeEEEecCC
Confidence 688999999999999999975 57899999975
No 488
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=38.05 E-value=13 Score=42.77 Aligned_cols=33 Identities=39% Similarity=0.747 Sum_probs=29.2
Q ss_pred CcceEEecCCCccceeecccccCCCceEEEecCC
Q psy1205 139 DYDFIVIGGGSSGAVVANRLSEVPNWRVLLIEAG 172 (868)
Q Consensus 139 ~~d~vi~g~G~~G~~~a~~ls~~~~~~v~l~~ag 172 (868)
.||.||+|+|.+|...|.+++.. +.+|+|+|++
T Consensus 3 ~yDvvVIGgGpaGl~aA~~la~~-g~~V~lie~~ 35 (441)
T PRK08010 3 KYQAVIIGFGKAGKTLAVTLAKA-GWRVALIEQS 35 (441)
T ss_pred cCCEEEECCCHhHHHHHHHHHHC-CCeEEEEcCC
Confidence 48999999999999999999864 5689999976
No 489
>COG3349 Uncharacterized conserved protein [Function unknown]
Probab=38.03 E-value=10 Score=43.68 Aligned_cols=41 Identities=12% Similarity=0.180 Sum_probs=32.3
Q ss_pred cccCCCcchhhhhhhhhcccccchhhhhhhhhhccccCccccccc
Q psy1205 332 VTSGSAPLGGIQALRITRQDLVRWDQHLILALSCHRNSKSMVWTG 376 (868)
Q Consensus 332 ~~~g~~~~g~~~a~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 376 (868)
.+.|.|++|+.+|+.||++|. ++.++|.+++...+...|+.
T Consensus 4 ai~GaG~AgL~~a~~La~~g~----~vt~~ea~~~~GGk~~s~~~ 44 (485)
T COG3349 4 AIAGAGLAGLAAAYELADAGY----DVTLYEARDRLGGKVASWRD 44 (485)
T ss_pred EEEcccHHHHHHHHHHHhCCC----ceEEEeccCccCceeeeeec
Confidence 468999999999999999997 78888888855544444444
No 490
>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form. This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=37.59 E-value=77 Score=40.73 Aligned_cols=61 Identities=20% Similarity=0.198 Sum_probs=48.2
Q ss_pred cCCCCeEEEccceEeEEEEcCCCCeEEEEEEEE-CCeEEEEEeccEEEEccCCcCchHHHHhcCCC
Q psy1205 514 ISRNNLHILLNTTVTRVIVDPLTKAAIGVEFLT-NGRLERLQAKNEVIVCAGAVDSPRILLLSGIG 578 (868)
Q Consensus 514 ~~~~nl~I~~~~~V~rIl~d~~~~~a~GV~~~~-~g~~~~v~A~k~VILAAGai~SP~LLl~SGIG 578 (868)
.++.+++|++++.|+++.- ++++.+|++.. ++...++.++ .|+++.|..-+..|+...|..
T Consensus 361 L~~~GV~i~~~~~v~~i~g---~~~v~~V~l~~~~g~~~~i~~D-~V~va~G~~Pnt~L~~~lg~~ 422 (985)
T TIGR01372 361 ARELGIEVLTGHVVAATEG---GKRVSGVAVARNGGAGQRLEAD-ALAVSGGWTPVVHLFSQRGGK 422 (985)
T ss_pred HHHcCCEEEcCCeEEEEec---CCcEEEEEEEecCCceEEEECC-EEEEcCCcCchhHHHHhcCCC
Confidence 3567899999999999853 35677888764 4556678886 899999999999988877643
No 491
>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase. Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.
Probab=36.90 E-value=22 Score=40.71 Aligned_cols=34 Identities=26% Similarity=0.457 Sum_probs=30.1
Q ss_pred eEEEECCCchhhhHHhhhhccCcccccccCCCCCc
Q psy1205 63 DFIVIGGGSSGAVVANRLSEMNTCNCPVTQPGPTL 97 (868)
Q Consensus 63 d~~~~g~~~~~~~~a~~~~~~~~~~~LvlE~G~~L 97 (868)
.++|||||.+|+-+|..|++. +.+|.+++++..+
T Consensus 139 ~vvViGgG~~g~e~A~~l~~~-g~~Vtli~~~~~~ 172 (427)
T TIGR03385 139 NVVIIGGGYIGIEMAEALRER-GKNVTLIHRSERI 172 (427)
T ss_pred eEEEECCCHHHHHHHHHHHhC-CCcEEEEECCccc
Confidence 689999999999999999874 6789999999874
No 492
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=36.77 E-value=23 Score=36.10 Aligned_cols=32 Identities=22% Similarity=0.342 Sum_probs=27.3
Q ss_pred ceEEEECCCchhhhHHhhhhccCcccccccCCC
Q psy1205 62 YDFIVIGGGSSGAVVANRLSEMNTCNCPVTQPG 94 (868)
Q Consensus 62 ~d~~~~g~~~~~~~~a~~~~~~~~~~~LvlE~G 94 (868)
--++|||||..|.-.|..|.+. +.+|.|+++-
T Consensus 11 k~vLVIGgG~va~~ka~~Ll~~-ga~V~VIs~~ 42 (202)
T PRK06718 11 KRVVIVGGGKVAGRRAITLLKY-GAHIVVISPE 42 (202)
T ss_pred CEEEEECCCHHHHHHHHHHHHC-CCeEEEEcCC
Confidence 3589999999999999999885 5799999764
No 493
>COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only]
Probab=36.75 E-value=24 Score=40.83 Aligned_cols=37 Identities=24% Similarity=0.275 Sum_probs=32.5
Q ss_pred cceEEEECCCchhhhHHhhhhccCcccccccCCCCCcc
Q psy1205 61 DYDFIVIGGGSSGAVVANRLSEMNTCNCPVTQPGPTLA 98 (868)
Q Consensus 61 ~~d~~~~g~~~~~~~~a~~~~~~~~~~~LvlE~G~~LG 98 (868)
...+-|||+|+||+.+|..|+.. +..|.+-||=...|
T Consensus 123 g~~VaviGaGPAGl~~a~~L~~~-G~~Vtv~e~~~~~G 159 (457)
T COG0493 123 GKKVAVIGAGPAGLAAADDLSRA-GHDVTVFERVALDG 159 (457)
T ss_pred CCEEEEECCCchHhhhHHHHHhC-CCeEEEeCCcCCCc
Confidence 46789999999999999999986 78999999887655
No 494
>KOG2844|consensus
Probab=36.66 E-value=97 Score=37.06 Aligned_cols=51 Identities=27% Similarity=0.258 Sum_probs=36.8
Q ss_pred hhhccCCCCeEEEccceEeEEEEcCCCCeEEEEEEEECCeEEEEEeccEEEEccCCcC
Q psy1205 510 LRPIISRNNLHILLNTTVTRVIVDPLTKAAIGVEFLTNGRLERLQAKNEVIVCAGAVD 567 (868)
Q Consensus 510 L~~~~~~~nl~I~~~~~V~rIl~d~~~~~a~GV~~~~~g~~~~v~A~k~VILAAGai~ 567 (868)
|..++++-++.|+-++.|++|... +++..||+-.. | .|++. .||=|||...
T Consensus 193 la~~A~~~GA~viE~cpV~~i~~~--~~~~~gVeT~~-G---~iet~-~~VNaaGvWA 243 (856)
T KOG2844|consen 193 LARAASALGALVIENCPVTGLHVE--TDKFGGVETPH-G---SIETE-CVVNAAGVWA 243 (856)
T ss_pred HHHHHHhcCcEEEecCCcceEEee--cCCccceeccC-c---ceecc-eEEechhHHH
Confidence 444557789999999999999987 34444887432 2 46675 5888888665
No 495
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=36.63 E-value=9.6 Score=44.22 Aligned_cols=56 Identities=18% Similarity=0.241 Sum_probs=37.0
Q ss_pred hhhccCCCCeEEEccceEeEEEEcCCCCeEEEEEEEECCeEEEEEeccEEEEccCCcCchHHH
Q psy1205 510 LRPIISRNNLHILLNTTVTRVIVDPLTKAAIGVEFLTNGRLERLQAKNEVIVCAGAVDSPRIL 572 (868)
Q Consensus 510 L~~~~~~~nl~I~~~~~V~rIl~d~~~~~a~GV~~~~~g~~~~v~A~k~VILAAGai~SP~LL 572 (868)
+....++.++++++++.|+++..+ ++.+ .|+. .+++ ++.++ .||+|.|.--...+|
T Consensus 222 l~~~l~~~gI~v~~~~~v~~i~~~--~~~~-~v~~-~~g~--~i~~D-~vi~a~G~~p~~~~l 277 (461)
T PRK05249 222 LSYHLRDSGVTIRHNEEVEKVEGG--DDGV-IVHL-KSGK--KIKAD-CLLYANGRTGNTDGL 277 (461)
T ss_pred HHHHHHHcCCEEEECCEEEEEEEe--CCeE-EEEE-CCCC--EEEeC-EEEEeecCCccccCC
Confidence 334445678999999999999765 2222 1222 2443 47775 799999987776654
No 496
>PLN02576 protoporphyrinogen oxidase
Probab=36.61 E-value=11 Score=44.11 Aligned_cols=31 Identities=13% Similarity=0.142 Sum_probs=27.4
Q ss_pred ccccCCCcchhhhhhhhhcc-cccchhhhhhhhhhc
Q psy1205 331 AVTSGSAPLGGIQALRITRQ-DLVRWDQHLILALSC 365 (868)
Q Consensus 331 ~~~~g~~~~g~~~a~~~~~~-g~~~~~~~~~~~~~~ 365 (868)
.+++|.|.+|..+|++|+++ |. ++.++|+.+
T Consensus 15 v~IIGaGisGL~aA~~L~~~~g~----~v~vlEa~~ 46 (496)
T PLN02576 15 VAVVGAGVSGLAAAYALASKHGV----NVLVTEARD 46 (496)
T ss_pred EEEECcCHHHHHHHHHHHHhcCC----CEEEEecCC
Confidence 46899999999999999999 87 688888876
No 497
>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated
Probab=36.56 E-value=14 Score=42.09 Aligned_cols=33 Identities=36% Similarity=0.625 Sum_probs=29.0
Q ss_pred CcceEEecCCCccceeecccccCCCceEEEecCC
Q psy1205 139 DYDFIVIGGGSSGAVVANRLSEVPNWRVLLIEAG 172 (868)
Q Consensus 139 ~~d~vi~g~G~~G~~~a~~ls~~~~~~v~l~~ag 172 (868)
.+|++|+|+|.+|...|+.|+. .+.+|.|+|+.
T Consensus 4 ~~dV~IvGaG~~Gl~~A~~L~~-~G~~v~viE~~ 36 (405)
T PRK08850 4 SVDVAIIGGGMVGLALAAALKE-SDLRIAVIEGQ 36 (405)
T ss_pred cCCEEEECccHHHHHHHHHHHh-CCCEEEEEcCC
Confidence 4789999999999999999975 57899999964
No 498
>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.
Probab=36.40 E-value=9.3 Score=44.17 Aligned_cols=30 Identities=13% Similarity=-0.022 Sum_probs=25.0
Q ss_pred CccccCCCcchhhhhhhhhcccccchhhhhhhhh
Q psy1205 330 PAVTSGSAPLGGIQALRITRQDLVRWDQHLILAL 363 (868)
Q Consensus 330 p~~~~g~~~~g~~~a~~~~~~g~~~~~~~~~~~~ 363 (868)
..+++|+|.+|..+|.++++.|. ++.++|+
T Consensus 4 DvvVIG~GpaG~~aA~~aa~~G~----~V~lie~ 33 (446)
T TIGR01424 4 DLFVIGAGSGGVRAARLAANHGA----KVAIAEE 33 (446)
T ss_pred cEEEECCCHHHHHHHHHHHhCCC----cEEEEec
Confidence 35689999999999999999997 4666665
No 499
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=36.31 E-value=21 Score=39.05 Aligned_cols=32 Identities=16% Similarity=0.203 Sum_probs=28.2
Q ss_pred eEEEECCCchhhhHHhhhhccCcccccccCCCC
Q psy1205 63 DFIVIGGGSSGAVVANRLSEMNTCNCPVTQPGP 95 (868)
Q Consensus 63 d~~~~g~~~~~~~~a~~~~~~~~~~~LvlE~G~ 95 (868)
-+.|||+|..|+.+|.+|++. +..|.++-|+.
T Consensus 7 ~I~IiG~GaiG~~lA~~L~~~-g~~V~~~~r~~ 38 (313)
T PRK06249 7 RIGIIGTGAIGGFYGAMLARA-GFDVHFLLRSD 38 (313)
T ss_pred EEEEECCCHHHHHHHHHHHHC-CCeEEEEEeCC
Confidence 488999999999999999985 57888888875
No 500
>PLN02268 probable polyamine oxidase
Probab=36.24 E-value=10 Score=43.60 Aligned_cols=30 Identities=13% Similarity=0.110 Sum_probs=27.1
Q ss_pred cccCCCcchhhhhhhhhcccccchhhhhhhhhhc
Q psy1205 332 VTSGSAPLGGIQALRITRQDLVRWDQHLILALSC 365 (868)
Q Consensus 332 ~~~g~~~~g~~~a~~~~~~g~~~~~~~~~~~~~~ 365 (868)
+++|.|++|..+|.+|.+.|. ++.++|+.+
T Consensus 4 vVIGaGisGL~aA~~L~~~g~----~v~vlEa~~ 33 (435)
T PLN02268 4 IVIGGGIAGIAAARALHDASF----KVTLLESRD 33 (435)
T ss_pred EEECCCHHHHHHHHHHHhCCC----eEEEEeCCC
Confidence 679999999999999999887 588998887
Done!