RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy1205
(868 letters)
>gnl|CDD|235000 PRK02106, PRK02106, choline dehydrogenase; Validated.
Length = 560
Score = 360 bits (926), Expect = e-114
Identities = 185/490 (37%), Positives = 251/490 (51%), Gaps = 67/490 (13%)
Query: 390 VLGGTSVLNGMMYIRGSRADYDNWAK-AGNPGWSYQDVLPYFLKSEDNQQATMMDQGFHG 448
VLGG+S +NGM+YIRG+ DYDNWA+ G GWSY D LPYF K+E + + G
Sbjct: 87 VLGGSSSINGMVYIRGNAMDYDNWAELPGLEGWSYADCLPYFKKAETRDGG---EDDYRG 143
Query: 449 VGGYLTVTQ-FPYHPPLSHSILQGAMELGMPV-RDLNGVSHTGFMIAQTTTRNGSRLSTS 506
G L+VT+ P PL + ++ ++ G P DLNG GF T NG R S +
Sbjct: 144 GDGPLSVTRGKPGTNPLFQAFVEAGVQAGYPRTDDLNGYQQEGFGPMDRTVTNGRRWSAA 203
Query: 507 KAFLRPIISRNNLHILLNTTVTRVIVDPLTKAAIGVEFLTNGRLERLQAKNEVIVCAGAV 566
+A+L P + R NL I+ + R++ + K A+GVE+ G E +A+ EVI+ AGA+
Sbjct: 204 RAYLDPALKRPNLTIVTHALTDRILFEG--KRAVGVEYERGGGRETARARREVILSAGAI 261
Query: 567 DSPRILLLSGIGPREELRRLNIAPIHDLPGVGKNLHNHVAHFLNFFINDTDT------TA 620
+SP++L LSGIGP E L+ L I +HDLPGVG+NL +H L +I A
Sbjct: 262 NSPQLLQLSGIGPAEHLKELGIPVVHDLPGVGENLQDH----LEVYIQYECKQPVSLYPA 317
Query: 621 LNW----ATAMEYLLFRDGLMSGTGLS---EVTGFVHSRLSNPAEDNPDLQIFFSGYLAN 673
L W E+L GL G S E GF+ SR D P++Q F L
Sbjct: 318 LKWWNKPKIGAEWLFTGTGL----GASNHFEAGGFIRSR---AGVDWPNIQYHF---LPV 367
Query: 674 CAR-TGQVGERSDGMNNSTPVPQRTISIFPTVLHPKSRGYLTLKDNNPQTPPLIFARYLT 732
R G + G + P + SRG + LK +P+ P I Y++
Sbjct: 368 AIRYDGSNAVKGHGF---------QAHVGP--MRSPSRGSVKLKSADPRAHPSILFNYMS 416
Query: 733 HPDDVKTLVDGIKIAIRLTQTAALQKYGFRIDTTPVKGCENLPFGC----DAYWECAIRR 788
D + D I++ + AL Y +G E P G D + +R
Sbjct: 417 TEQDWREFRDAIRLTREIMAQPALDPY---------RGREISP-GADVQTDEEIDAFVRE 466
Query: 789 NTGAEN--HQAGSCKMGPASDPSAVVSPELKVHGVDRLRVVDCSIMPAVTSGNTNAPAIM 846
+ AE H + +CKMG DP AVV PE +VHGV+ LRVVD SIMP +T+GN NAP IM
Sbjct: 467 H--AETAYHPSCTCKMGT--DPMAVVDPEGRVHGVEGLRVVDASIMPTITNGNLNAPTIM 522
Query: 847 IAEKASDLIK 856
IAEKA+DLI+
Sbjct: 523 IAEKAADLIR 532
Score = 87.2 bits (217), Expect = 1e-17
Identities = 41/89 (46%), Positives = 54/89 (60%), Gaps = 8/89 (8%)
Query: 137 DRDYDFIVIGGGSSGAVVANRLSEVPNWRVLLIEAGG-DEPTG--TQIPSMFLNFLGSSI 193
+YD+I+IG GS+G V+ANRLSE P+ VLL+EAGG D Q+P+ L
Sbjct: 3 TMEYDYIIIGAGSAGCVLANRLSEDPDVSVLLLEAGGPDYRWDFFIQMPAALAFPLQGKR 62
Query: 194 -DYGYKTEPEDMACLNNEERRCNWPRGKV 221
++ Y+TEPE +NN RR PRGKV
Sbjct: 63 YNWAYETEPE--PHMNN--RRMECPRGKV 87
Score = 73.3 bits (181), Expect = 2e-13
Identities = 27/44 (61%), Positives = 33/44 (75%), Gaps = 2/44 (4%)
Query: 292 HQAGSCKMGPASDPSAVVSPELKVHGVDRLRVVDCSIMPAVTSG 335
H + +CKMG DP AVV PE +VHGV+ LRVVD SIMP +T+G
Sbjct: 473 HPSCTCKMGT--DPMAVVDPEGRVHGVEGLRVVDASIMPTITNG 514
Score = 45.2 bits (108), Expect = 1e-04
Identities = 15/24 (62%), Positives = 20/24 (83%)
Query: 59 DRDYDFIVIGGGSSGAVVANRLSE 82
+YD+I+IG GS+G V+ANRLSE
Sbjct: 3 TMEYDYIIIGAGSAGCVLANRLSE 26
Score = 44.8 bits (107), Expect = 2e-04
Identities = 25/63 (39%), Positives = 33/63 (52%), Gaps = 8/63 (12%)
Query: 222 PNWRVLLIEAGG-DEPTG--TQIPSMFLNFLGSSI-DYGYKTEPEDMACLNNEERRCNWP 277
P+ VLL+EAGG D Q+P+ L ++ Y+TEPE +NN RR P
Sbjct: 28 PDVSVLLLEAGGPDYRWDFFIQMPAALAFPLQGKRYNWAYETEPE--PHMNN--RRMECP 83
Query: 278 RGK 280
RGK
Sbjct: 84 RGK 86
>gnl|CDD|225186 COG2303, BetA, Choline dehydrogenase and related flavoproteins
[Amino acid transport and metabolism].
Length = 542
Score = 318 bits (817), Expect = 6e-99
Identities = 177/557 (31%), Positives = 253/557 (45%), Gaps = 67/557 (12%)
Query: 332 VTSGSAPLGGIQALRITRQDL-----------VRWDQHLILALSCHRNSKSMVWTGSVLW 380
V SGSA G + A R++ L R + A + N W
Sbjct: 13 VGSGSA--GSVLAARLSDAGLSVLVLEAGGPDRRPLIQMPAAYAFLMNGPRYDWGFRTEP 70
Query: 381 TA------VSCLLSPVLGGTSVLNGMMYIRGSRADYDNWA-KAGNPGWSYQDVLPYFLKS 433
++ VLGG+S +NGM+Y+RG D+D WA ++G PGW Y DVLPYF ++
Sbjct: 71 EPHLRGRELAWPRGKVLGGSSSINGMVYVRGHPEDFDAWAQESGAPGWPYDDVLPYFKRA 130
Query: 434 EDNQQATMMDQGF-HGVGGYLTVTQFPYHPPLSHSILQGAMELGMP-VRDLNGVSHTGFM 491
ED D HG GG L V+ P++ + ++ +LG P D NG GF
Sbjct: 131 EDLLGVGGQDLRTWHGGGGPLPVSPPRSPNPIARAFIEAGEQLGFPTTPDPNGADQEGFG 190
Query: 492 IAQTTTRNGSRLSTSKAFLRPIISRNNLHILLNTTVTRVIVDPLTKAAIGVEFLTN--GR 549
T NG R S ++A+L+P + R NL +L V R++++ A+GVE G
Sbjct: 191 PYCVTICNGRRWSAARAYLKPALKRPNLTLLTGARVRRILLEG--DRAVGVEVEIGDGGT 248
Query: 550 LERLQAKNEVIVCAGAVDSPRILLLSGIGPREELRRLNIAPIHDLPGVGKNLHNHVAHFL 609
+E A EV++ AGA++SP++LLLSGIGP + L I + LPGVG+NL +H+ ++
Sbjct: 249 IETAVAAREVVLAAGAINSPKLLLLSGIGPADHLLEHGIDVVGRLPGVGQNLQDHLEIYV 308
Query: 610 NFFINDTDTTALNW------ATAMEYLLFRDGLMSGTGLSEVTGFVHSRLSNPAEDNPDL 663
F + ++ A YLL RDG + GFV S PA + PD
Sbjct: 309 AFEATEPTNDSVLSLFSKLGIGADRYLLTRDGPGATNHF--EGGFVRSG---PAGEYPDG 363
Query: 664 QIFFSGYLANCARTGQVGERSDGMNNSTPVPQRTISIFPTVLHPKSRGYLTLKDNNPQTP 723
Q F + ++ + PKSRG +TL+ +P
Sbjct: 364 QYHF------APLPLAIRAAGAEHGF---------TLHVGPMRPKSRGSVTLRSPDPDNR 408
Query: 724 PLIFARYLTHPDDVKTLVDGIKIAIRLTQTAALQKYGFRIDTTPVKGCENLPFGC---DA 780
P+I YL+ D GI++ + AL + E P D
Sbjct: 409 PVIDPNYLSAEGDRAIFRAGIRLTREIIGQPALDAR---------RKAELAPGPRVTTDE 459
Query: 781 YWECAIRRNTGAENHQAGSCKMGPASDPSAVV-SPELKVHGVDRLRVVDCSIMPAVTSGN 839
AIR H G+C+MG SDP+AVV P L+VHG++ LRVVD S+MP T N
Sbjct: 460 DISAAIRFLARTAYHPMGTCRMG--SDPAAVVDDPYLRVHGLENLRVVDASVMPTSTGVN 517
Query: 840 TNAPAIMIAEKASDLIK 856
N I +AE+A+D I
Sbjct: 518 PNLTIIALAERAADHIL 534
Score = 69.8 bits (171), Expect = 3e-12
Identities = 33/88 (37%), Positives = 51/88 (57%), Gaps = 7/88 (7%)
Query: 136 PDRDYDFIVIGGGSSGAVVANRLSEVPNWRVLLIEAGG-DEPTGTQIPSMFLNFLGSSI- 193
+YD++++G GS+G+V+A RLS+ VL++EAGG D Q+P+ + +
Sbjct: 4 MKMEYDYVIVGSGSAGSVLAARLSD-AGLSVLVLEAGGPDRRPLIQMPAAYAFLMNGPRY 62
Query: 194 DYGYKTEPEDMACLNNEERRCNWPRGKV 221
D+G++TEPE R WPRGKV
Sbjct: 63 DWGFRTEPEPHL----RGRELAWPRGKV 86
Score = 63.6 bits (155), Expect = 2e-10
Identities = 28/55 (50%), Positives = 35/55 (63%), Gaps = 3/55 (5%)
Query: 282 AIRRNTGAENHQAGSCKMGPASDPSAVV-SPELKVHGVDRLRVVDCSIMPAVTSG 335
AIR H G+C+MG SDP+AVV P L+VHG++ LRVVD S+MP T
Sbjct: 464 AIRFLARTAYHPMGTCRMG--SDPAAVVDDPYLRVHGLENLRVVDASVMPTSTGV 516
Score = 42.1 bits (99), Expect = 0.001
Identities = 11/25 (44%), Positives = 20/25 (80%)
Query: 58 PDRDYDFIVIGGGSSGAVVANRLSE 82
+YD++++G GS+G+V+A RLS+
Sbjct: 4 MKMEYDYVIVGSGSAGSVLAARLSD 28
Score = 35.9 bits (83), Expect = 0.095
Identities = 21/59 (35%), Positives = 30/59 (50%), Gaps = 6/59 (10%)
Query: 225 RVLLIEAGG-DEPTGTQIPSMFLNFLGSSI-DYGYKTEPEDMACLNNEERRCNWPRGKC 281
VL++EAGG D Q+P+ + + D+G++TEPE R WPRGK
Sbjct: 32 SVLVLEAGGPDRRPLIQMPAAYAFLMNGPRYDWGFRTEPEPHL----RGRELAWPRGKV 86
>gnl|CDD|233581 TIGR01810, betA, choline dehydrogenase. Choline dehydrogenase
catalyzes the conversion of exogenously supplied choline
into the intermediate glycine betaine aldehyde, as part
of a two-step oxidative reaction leading to the
formation of osmoprotectant betaine. This enzymatic
system can be found in both gram-positive and
gram-negative bacteria. As in Escherichia coli ,
Staphylococcus xylosus , and Sinorhizobium meliloti,
this enzyme is found associated in a transciptionally
co-induced gene cluster with betaine aldehyde
dehydrogenase, the second catalytic enzyme in this
reaction. Other gram-positive organisms have been shown
to employ a different enzymatic system, utlizing a
soluable choline oxidase or type III alcohol
dehydrogenase instead of choline dehydrogenase. This
enzyme is a member of the GMC oxidoreductase family
(pfam00732 and pfam05199), sharing a common
evoluntionary origin and enzymatic reaction with alcohol
dehydrogenase. Outgrouping from this model, Caulobacter
crescentus shares sequence homology with choline
dehydrogenase, yet other genes participating in this
enzymatic reaction have not currently been identified
[Cellular processes, Adaptations to atypical
conditions].
Length = 532
Score = 317 bits (813), Expect = 2e-98
Identities = 165/484 (34%), Positives = 244/484 (50%), Gaps = 36/484 (7%)
Query: 383 VSCLLSPVLGGTSVLNGMMYIRGSRADYDNWAKA-GNPGWSYQDVLPYFLKSEDNQQATM 441
V VLGG+S +NGM+Y RG+ DY+ WAK G W Y D LPY+ + E
Sbjct: 74 VGHARGKVLGGSSSINGMIYQRGNPMDYEKWAKPEGMESWDYADCLPYYKRLETTF---G 130
Query: 442 MDQGFHGVGGYLTVTQFPYHPPLSHSILQGAMELGMPVR-DLNGVSHTGFMIAQTTTRNG 500
++ + G G + V + P PL + ++ +E G D+NG GF +T NG
Sbjct: 131 GEKPYRGHDGPIKVRRGPADNPLFQAFIEAGVEAGYNKTPDVNGFRQEGFGPMDSTVHNG 190
Query: 501 SRLSTSKAFLRPIISRNNLHILLNTTVTRVIVDPLTKAAIGVEFLTNGRLERLQAKNEVI 560
R+S ++A+L P + R NL + VT++ + A GVEF GR E +A EVI
Sbjct: 191 RRVSAARAYLHPAMKRPNLEVQTRAFVTKINFE--GNRATGVEFKKGGRKEHTEANKEVI 248
Query: 561 VCAGAVDSPRILLLSGIGPREELRRLNIAPIHDLPGVGKNLHNHVAHFLNFFINDTDT-- 618
+ AGA++SP++L LSGIG E LR L I P LPGVG+NL +H+ ++ +
Sbjct: 249 LSAGAINSPQLLQLSGIGDAEHLRELGIEPRIHLPGVGENLQDHLEVYVQHACKQPVSLY 308
Query: 619 TALNW----ATAMEYLLFRDGLMSGTGLSEVTGFVHSRLSNPAEDNPDLQIFFSGYLANC 674
+LNW ++L R G + E GFV S N D P++Q F
Sbjct: 309 PSLNWLKQPFIGAQWLFGRKGAGASNHF-EGGGFVRS---NDDVDYPNIQYHFL------ 358
Query: 675 ARTGQVGERSDGMNNSTPVPQRTISIFPTVLHPKSRGYLTLKDNNPQTPPLIFARYLTHP 734
V R DG + ++ SRG++ +K +P P I Y++H
Sbjct: 359 ----PVAIRYDGTK---APKAHGFQVHVGPMYSNSRGHVKIKSKDPFEKPEIVFNYMSHE 411
Query: 735 DDVKTLVDGIKIAIRLTQTAALQKYGFRIDTTPVKGCENLPFGCDAYWECAIRRNTGAEN 794
+D + + I++ + + AL Y + +P + D + +RR+
Sbjct: 412 EDWREFREAIRVTREILKQKALDPYRGG-EISPGPEVQT-----DEEIDEFVRRHGETAL 465
Query: 795 HQAGSCKMGPASDPSAVVSPELKVHGVDRLRVVDCSIMPAVTSGNTNAPAIMIAEKASDL 854
H G+CKMGPASD +VV PE +VHG++ LRVVD SIMP +T+GN NAP IM+ EKA+D+
Sbjct: 466 HPCGTCKMGPASDEMSVVDPETRVHGMEGLRVVDASIMPRITNGNLNAPVIMMGEKAADI 525
Query: 855 IKQQ 858
I+ +
Sbjct: 526 IRGK 529
Score = 71.8 bits (176), Expect = 7e-13
Identities = 30/54 (55%), Positives = 40/54 (74%)
Query: 283 IRRNTGAENHQAGSCKMGPASDPSAVVSPELKVHGVDRLRVVDCSIMPAVTSGS 336
+RR+ H G+CKMGPASD +VV PE +VHG++ LRVVD SIMP +T+G+
Sbjct: 457 VRRHGETALHPCGTCKMGPASDEMSVVDPETRVHGMEGLRVVDASIMPRITNGN 510
Score = 65.3 bits (159), Expect = 8e-11
Identities = 38/85 (44%), Positives = 53/85 (62%), Gaps = 8/85 (9%)
Query: 141 DFIVIGGGSSGAVVANRLSEVPNWRVLLIEAGG-DEPTG--TQIPSMFLNFLGSSI-DYG 196
D+I+IGGGS+G+V+A RLSE + VL++EAGG D P Q+P+ G+ ++
Sbjct: 1 DYIIIGGGSAGSVLAGRLSEDVSNSVLVLEAGGSDYPWDLLIQMPAALAYPAGNKRYNWI 60
Query: 197 YKTEPEDMACLNNEERRCNWPRGKV 221
Y+TEPE +NN RR RGKV
Sbjct: 61 YETEPEPH--MNN--RRVGHARGKV 81
Score = 35.6 bits (82), Expect = 0.12
Identities = 14/20 (70%), Positives = 19/20 (95%)
Query: 63 DFIVIGGGSSGAVVANRLSE 82
D+I+IGGGS+G+V+A RLSE
Sbjct: 1 DYIIIGGGSAGSVLAGRLSE 20
>gnl|CDD|216089 pfam00732, GMC_oxred_N, GMC oxidoreductase. This family of
proteins bind FAD as a cofactor.
Length = 218
Score = 168 bits (429), Expect = 9e-48
Identities = 73/224 (32%), Positives = 100/224 (44%), Gaps = 38/224 (16%)
Query: 390 VLGGTSVLNGMMYIRGSRADYDNWAK-AGNPGWSYQDVLPYFLKSEDNQQATMMDQGFHG 448
+GG S +N IR A D WA G GW Y D LPY K E + G
Sbjct: 26 TVGGGSSVNWSACIRTPAAVLDEWASEFGLEGWGYDDYLPYMDKVE----GPL------G 75
Query: 449 VGGYLTVTQFPYHPPLSHSILQGAMELGMPV----RDLNGVSHTGFMIAQTTTRNGSRLS 504
V T+ PL+ ++L+ A ELG PV R+ NG + GF G++ S
Sbjct: 76 VT-----TKGIEESPLNQALLKAAEELGYPVEAVPRNSNGCHYCGFCGLG--CPTGAKQS 128
Query: 505 TSKAFLRPIISRNNLHILLNTTVTRVIVDPLTKAAIGVEFLT--NGRLERLQAKNEVIVC 562
T++ +LRP + R NL IL ++I+ A+GVE G + A EV+V
Sbjct: 129 TARTWLRPALER-NLRILTGAKAEKIIILGRGGRAVGVEARDGGGGIKRLITAAKEVVVA 187
Query: 563 AGAVDSPRILLLSGIGPREELRRLNIAPIHDLPGVGKNLHNHVA 606
AGA+++P +LL SG+G VGKNL H
Sbjct: 188 AGALNTPPLLLRSGLGKNPH-------------PVGKNLQLHPV 218
>gnl|CDD|218493 pfam05199, GMC_oxred_C, GMC oxidoreductase. This domain found
associated with pfam00732.
Length = 139
Score = 149 bits (378), Expect = 5e-42
Identities = 50/145 (34%), Positives = 72/145 (49%), Gaps = 6/145 (4%)
Query: 707 PKSRGYLTLKDNNPQTPPLIFARYLTHPDDVKTLVDGIKIAIRLTQTAALQKYGFRIDTT 766
P+SRG +TL ++P P+I YL+ P D+ L +++A R+ A ++
Sbjct: 1 PRSRGRVTLSSSDPLGLPVIDPNYLSDPADLAALRAALRLARRILAAALVELTPG----- 55
Query: 767 PVKGCENLPFGCDAYWECAIRRNTGAENHQAGSCKMGPASDPSAVVSPELKVHGVDRLRV 826
PV+ D IR H G+C+MG D VV P+L+VHGVD LRV
Sbjct: 56 PVEVVPGAAEASDDEILEYIRAAAVTSWHPMGTCRMGADPDDG-VVDPDLRVHGVDNLRV 114
Query: 827 VDCSIMPAVTSGNTNAPAIMIAEKA 851
VD S+ P+ SGN +AE+A
Sbjct: 115 VDASVFPSSPSGNPTLTIYALAERA 139
Score = 78.9 bits (195), Expect = 2e-17
Identities = 30/65 (46%), Positives = 37/65 (56%), Gaps = 2/65 (3%)
Query: 281 CAIRRNTGAENHQAGSCKMGPASDPSAVVSPELKVHGVDRLRVVDCSIMPAVTSGSAPLG 340
IR H G+C+MG D VV P+L+VHGVD LRVVD S+ P+ SG+ P
Sbjct: 73 EYIRAAAVTSWHPMGTCRMGADPDDG-VVDPDLRVHGVDNLRVVDASVFPSSPSGN-PTL 130
Query: 341 GIQAL 345
I AL
Sbjct: 131 TIYAL 135
>gnl|CDD|234421 TIGR03970, Rv0697, dehydrogenase, Rv0697 family. This model
describes a set of dehydrogenases belonging to the
glucose-methanol-choline oxidoreductase (GMC
oxidoreductase) family. Members of the present family
are restricted to Actinobacterial genome contexts
containing also members of families TIGR03962 and
TIGR03969 (the mycofactocin system), and are proposed to
be uniform in function.
Length = 487
Score = 141 bits (358), Expect = 1e-35
Identities = 82/219 (37%), Positives = 116/219 (52%), Gaps = 14/219 (6%)
Query: 390 VLGGTSVLNGMMYIRGSRADYDNWAKAGNPGWSYQDVLPYFLKSEDNQQATMMDQGFHGV 449
VLGG+ +NG + R AD+D W PGWS+ DVLP+F E + D HG
Sbjct: 83 VLGGSGAVNGGYFCRALPADFDAWPI---PGWSWDDVLPHFRAIETDLD---FDGPLHGT 136
Query: 450 GGYLTVTQFPYHPPLSHSILQGAMELGMPVR-DLNGV---SHTGFMIAQTTTRNGSRLST 505
G + V + +S + + A+ G DLNG + TG G R+ST
Sbjct: 137 AGPIPVRRTAELDGISAAFVAAALGAGFGWIADLNGSGPDAPTGVGAVPLNVDGGRRVST 196
Query: 506 SKAFLRPIISRNNLHILLNTTVTRVIVDPLTKAAIGVEFLTNGRLERLQAKNEVIVCAGA 565
+ A+L P + R NL + +T V R++ A+GVE L +G L+A + V++CAGA
Sbjct: 197 AVAYLLPALKRPNLTVEADTRVVRILFS--GTRAVGVEVLGDGGPRTLRA-DRVVLCAGA 253
Query: 566 VDSPRILLLSGIGPREELRRLNIAPIHDLPGVGKNLHNH 604
V+S +LLLSGIGP E+LR IA + DLP VG + +H
Sbjct: 254 VESAHLLLLSGIGPAEQLRAAGIAVVLDLP-VGSDFVDH 291
Score = 93.7 bits (233), Expect = 5e-20
Identities = 49/153 (32%), Positives = 73/153 (47%), Gaps = 14/153 (9%)
Query: 703 TVLHPKSRGYLTLKDNNPQTPPLIFARYLTHPDDVKTLVDGIKIAIRLTQTAALQKYGFR 762
++ P SRG + L +P PP I RY + D L G +A L + L G
Sbjct: 348 ALMRPHSRGRIRLASADPADPPRIEHRYDSSAADRAALRAGAALAHELLGSPEL---GPL 404
Query: 763 IDTTPVKGCENLPFGCDAYWECAIRRNTGAENHQAGSCKMGPASDPSAVVSPELKVHGVD 822
++ +G +A W + H GSC+MG DP AVV +V GV+
Sbjct: 405 LEPAVREG--------EASW---VLARLATSQHLCGSCRMGGRDDPGAVVDARCRVRGVE 453
Query: 823 RLRVVDCSIMPAVTSGNTNAPAIMIAEKASDLI 855
L VVD SI+P + S +A A+M+AE+A++ +
Sbjct: 454 GLWVVDGSILPVIPSRGPHATAVMVAERAAEFL 486
Score = 58.3 bits (141), Expect = 9e-09
Identities = 22/53 (41%), Positives = 28/53 (52%)
Query: 282 AIRRNTGAENHQAGSCKMGPASDPSAVVSPELKVHGVDRLRVVDCSIMPAVTS 334
+ H GSC+MG DP AVV +V GV+ L VVD SI+P + S
Sbjct: 416 WVLARLATSQHLCGSCRMGGRDDPGAVVDARCRVRGVEGLWVVDGSILPVIPS 468
Score = 45.6 bits (108), Expect = 1e-04
Identities = 19/32 (59%), Positives = 25/32 (78%)
Query: 141 DFIVIGGGSSGAVVANRLSEVPNWRVLLIEAG 172
D +V+GGGS+G VVA RLSE P+ V ++EAG
Sbjct: 2 DVLVVGGGSAGCVVAARLSEDPSCTVTVLEAG 33
Score = 41.3 bits (97), Expect = 0.002
Identities = 18/37 (48%), Positives = 23/37 (62%)
Query: 63 DFIVIGGGSSGAVVANRLSEMNTCNCPVTQPGPTLAS 99
D +V+GGGS+G VVA RLSE +C V + GP
Sbjct: 2 DVLVVGGGSAGCVVAARLSEDPSCTVTVLEAGPGYRD 38
>gnl|CDD|215420 PLN02785, PLN02785, Protein HOTHEAD.
Length = 587
Score = 69.1 bits (169), Expect = 5e-12
Identities = 36/92 (39%), Positives = 53/92 (57%), Gaps = 7/92 (7%)
Query: 517 NNLHILLNTTVTRVIVDPLTK--AAIGVEFL-TNGRLERLQAKN----EVIVCAGAVDSP 569
N L +LL+ TV +++ D K A GV F NG + N E+I+ AGA+ SP
Sbjct: 233 NKLRVLLHATVQKIVFDTSGKRPRATGVIFKDENGNQHQAFLSNNKGSEIILSAGAIGSP 292
Query: 570 RILLLSGIGPREELRRLNIAPIHDLPGVGKNL 601
++LLLSGIGP++EL++ I + VGK +
Sbjct: 293 QMLLLSGIGPKKELKKHKIPVVLHNEHVGKGM 324
Score = 52.5 bits (126), Expect = 8e-07
Identities = 41/172 (23%), Positives = 67/172 (38%), Gaps = 24/172 (13%)
Query: 707 PKSRGYLTLKDNNPQTPPLIFARYLTHPDDVKTLVDGIKIAIRLTQTAALQKYGFRIDTT 766
P S G+L+L + N P + Y HP D++ V GI+ ++ +T + + D
Sbjct: 424 PISTGHLSLINTNVDDNPSVTFNYFKHPQDLQRCVYGIRTIEKIVKTNHFTNFT-QCDKQ 482
Query: 767 PVKGCENLPFGCDAYWECAIRRNTGAEN--------------HQAGSCKMGPASDPSAVV 812
++ N+ + I ++T H G C +G VV
Sbjct: 483 TMEKVLNMSVKANIN---LIPKHTNDTKSLEQFCKDTVITIWHYHGGCHVG------KVV 533
Query: 813 SPELKVHGVDRLRVVDCSIMPAVTSGNTNAPAIMIAEKASDLIKQQWIGKRA 864
KV GV RLRV+D S N A +M+ I ++ +G+ A
Sbjct: 534 DQNYKVLGVSRLRVIDGSTFDESPGTNPQATVMMMGRYMGVKILRERLGRAA 585
Score = 42.9 bits (101), Expect = 8e-04
Identities = 25/61 (40%), Positives = 34/61 (55%), Gaps = 3/61 (4%)
Query: 128 NRPLSRGFPDRDYDFIVIGGGSSGAVVANRLSEVPNWRVLLIEAGGDEPTGTQIPSMFLN 187
+ S D YD+IV+GGG++G +A LS+ N+ VLL+E GG P G S N
Sbjct: 44 SSSSSSSGGDSAYDYIVVGGGTAGCPLAATLSQ--NFSVLLLERGG-VPFGNANVSFLEN 100
Query: 188 F 188
F
Sbjct: 101 F 101
Score = 35.6 bits (82), Expect = 0.12
Identities = 16/37 (43%), Positives = 18/37 (48%), Gaps = 6/37 (16%)
Query: 292 HQAGSCKMGPASDPSAVVSPELKVHGVDRLRVVDCSI 328
H G C +G VV KV GV RLRV+D S
Sbjct: 522 HYHGGCHVG------KVVDQNYKVLGVSRLRVIDGST 552
Score = 31.3 bits (71), Expect = 2.4
Identities = 13/33 (39%), Positives = 20/33 (60%)
Query: 50 NRPLSRGFPDRDYDFIVIGGGSSGAVVANRLSE 82
+ S D YD+IV+GGG++G +A LS+
Sbjct: 44 SSSSSSSGGDSAYDYIVVGGGTAGCPLAATLSQ 76
>gnl|CDD|223652 COG0579, COG0579, Predicted dehydrogenase [General function
prediction only].
Length = 429
Score = 42.3 bits (100), Expect = 0.001
Identities = 17/33 (51%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
Query: 139 DYDFIVIGGGSSGAVVANRLSEV-PNWRVLLIE 170
DYD ++IGGG GA A LSE P+ V L+E
Sbjct: 3 DYDVVIIGGGIMGAATAYELSEYEPDLSVALLE 35
Score = 31.1 bits (71), Expect = 3.1
Identities = 13/22 (59%), Positives = 15/22 (68%)
Query: 61 DYDFIVIGGGSSGAVVANRLSE 82
DYD ++IGGG GA A LSE
Sbjct: 3 DYDVVIIGGGIMGAATAYELSE 24
>gnl|CDD|235787 PRK06370, PRK06370, mercuric reductase; Validated.
Length = 463
Score = 41.0 bits (97), Expect = 0.003
Identities = 17/42 (40%), Positives = 23/42 (54%), Gaps = 4/42 (9%)
Query: 136 PDRDYDFIVIGGGSSGAVVANRLSEVPNWRVLLIEA---GGD 174
P + YD IVIG G +G +A R + + +V LIE GG
Sbjct: 2 PAQRYDAIVIGAGQAGPPLAARAAGL-GMKVALIERGLLGGT 42
Score = 34.4 bits (80), Expect = 0.25
Identities = 11/27 (40%), Positives = 16/27 (59%)
Query: 58 PDRDYDFIVIGGGSSGAVVANRLSEMN 84
P + YD IVIG G +G +A R + +
Sbjct: 2 PAQRYDAIVIGAGQAGPPLAARAAGLG 28
>gnl|CDD|235774 PRK06292, PRK06292, dihydrolipoamide dehydrogenase; Validated.
Length = 460
Score = 40.9 bits (97), Expect = 0.003
Identities = 17/42 (40%), Positives = 21/42 (50%), Gaps = 3/42 (7%)
Query: 138 RDYDFIVIGGGSSGAVVANRLSEVPNWRVLLIEAGGDEPTGT 179
YD IVIG G +G V A R ++ +V LIE GT
Sbjct: 2 EKYDVIVIGAGPAGYVAARRAAK-LGKKVALIE--KGPLGGT 40
Score = 34.4 bits (80), Expect = 0.27
Identities = 11/22 (50%), Positives = 13/22 (59%)
Query: 60 RDYDFIVIGGGSSGAVVANRLS 81
YD IVIG G +G V A R +
Sbjct: 2 EKYDVIVIGAGPAGYVAARRAA 23
>gnl|CDD|185420 PTZ00058, PTZ00058, glutathione reductase; Provisional.
Length = 561
Score = 40.4 bits (94), Expect = 0.004
Identities = 23/71 (32%), Positives = 31/71 (43%), Gaps = 7/71 (9%)
Query: 106 YMLFMGLLEVFIR------SQCDLEDPCNRPLSRGFPDRDYDFIVIGGGSSGAVVANRLS 159
++LF LL I+ +LE + P YD IVIGGGS G A R +
Sbjct: 9 FLLFFALLNPSIKLIRSFSFYHNLEASSAPTHLKKKPRMVYDLIVIGGGSGGMAAARRAA 68
Query: 160 EVPNWRVLLIE 170
+V L+E
Sbjct: 69 RNK-AKVALVE 78
Score = 37.7 bits (87), Expect = 0.027
Identities = 20/61 (32%), Positives = 26/61 (42%), Gaps = 6/61 (9%)
Query: 28 YMLFMGLLEVFIR------SQCDLEDPCNRPLSRGFPDRDYDFIVIGGGSSGAVVANRLS 81
++LF LL I+ +LE + P YD IVIGGGS G A R +
Sbjct: 9 FLLFFALLNPSIKLIRSFSFYHNLEASSAPTHLKKKPRMVYDLIVIGGGSGGMAAARRAA 68
Query: 82 E 82
Sbjct: 69 R 69
>gnl|CDD|216400 pfam01266, DAO, FAD dependent oxidoreductase. This family includes
various FAD dependent oxidoreductases:
Glycerol-3-phosphate dehydrogenase EC:1.1.99.5,
Sarcosine oxidase beta subunit EC:1.5.3.1, D-alanine
oxidase EC:1.4.99.1, D-aspartate oxidase EC:1.4.3.1.
Length = 234
Score = 39.6 bits (93), Expect = 0.004
Identities = 13/33 (39%), Positives = 16/33 (48%), Gaps = 1/33 (3%)
Query: 141 DFIVIGGGSSGAVVANRLSEVPNWRVLLIEAGG 173
D +VIGGG G A L+ V L+E G
Sbjct: 1 DVVVIGGGIVGLSTAYELAR-RGLSVTLLERGD 32
>gnl|CDD|224169 COG1249, Lpd, Pyruvate/2-oxoglutarate dehydrogenase complex,
dihydrolipoamide dehydrogenase (E3) component, and
related enzymes [Energy production and conversion].
Length = 454
Score = 39.5 bits (93), Expect = 0.007
Identities = 14/35 (40%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
Query: 139 DYDFIVIGGGSSGAVVANRLSEVPNWRVLLIEAGG 173
+YD +VIG G +G V A R +++ +V L+E G
Sbjct: 4 EYDVVVIGAGPAGYVAAIRAAQLG-LKVALVEKGE 37
Score = 35.3 bits (82), Expect = 0.14
Identities = 10/23 (43%), Positives = 16/23 (69%)
Query: 61 DYDFIVIGGGSSGAVVANRLSEM 83
+YD +VIG G +G V A R +++
Sbjct: 4 EYDVVVIGAGPAGYVAAIRAAQL 26
>gnl|CDD|223636 COG0562, Glf, UDP-galactopyranose mutase [Cell envelope biogenesis,
outer membrane].
Length = 374
Score = 39.2 bits (92), Expect = 0.008
Identities = 17/53 (32%), Positives = 30/53 (56%), Gaps = 11/53 (20%)
Query: 139 DYDFIVIGGGSSGAVVANRLSEVPNWRVLLIEA----GG------DEPTGTQI 181
+D++++G G SGAV+A +++ RVL++E GG D+ TG +
Sbjct: 1 MFDYLIVGAGLSGAVIAEVAAQL-GKRVLIVEKRNHIGGNAYDEADDQTGILV 52
Score = 32.7 bits (75), Expect = 0.94
Identities = 8/24 (33%), Positives = 17/24 (70%)
Query: 61 DYDFIVIGGGSSGAVVANRLSEMN 84
+D++++G G SGAV+A +++
Sbjct: 1 MFDYLIVGAGLSGAVIAEVAAQLG 24
>gnl|CDD|130488 TIGR01421, gluta_reduc_1, glutathione-disulfide reductase,
animal/bacterial. The tripeptide glutathione is an
important reductant, e.g., for maintaining the cellular
thiol/disulfide status and for protecting against
reactive oxygen species such as hydrogen peroxide.
Glutathione-disulfide reductase regenerates reduced
glutathione from oxidized glutathione (glutathione
disulfide) + NADPH. This model represents one of two
closely related subfamilies of glutathione-disulfide
reductase. Both are closely related to trypanothione
reductase, and separate models are built so each of the
three can describe proteins with conserved function.
This model describes glutathione-disulfide reductases of
animals, yeast, and a number of animal-resident bacteria
[Energy metabolism, Electron transport].
Length = 450
Score = 38.7 bits (90), Expect = 0.012
Identities = 24/75 (32%), Positives = 34/75 (45%), Gaps = 11/75 (14%)
Query: 138 RDYDFIVIGGGSSGAVVANRLSEVPNWRVLLIEA---GGDEPTGTQIP-------SMFLN 187
+ YD++VIGGGS G A R +E + LL+EA GG +P S
Sbjct: 1 KHYDYLVIGGGSGGIASARRAAEH-GAKALLVEAKKLGGTCVNVGCVPKKVMWYASDLAE 59
Query: 188 FLGSSIDYGYKTEPE 202
+ + DYG+ E
Sbjct: 60 RMHDAADYGFYQNLE 74
Score = 35.2 bits (81), Expect = 0.14
Identities = 12/23 (52%), Positives = 16/23 (69%)
Query: 60 RDYDFIVIGGGSSGAVVANRLSE 82
+ YD++VIGGGS G A R +E
Sbjct: 1 KHYDYLVIGGGSGGIASARRAAE 23
>gnl|CDD|223737 COG0665, DadA, Glycine/D-amino acid oxidases (deaminating) [Amino
acid transport and metabolism].
Length = 387
Score = 38.3 bits (89), Expect = 0.014
Identities = 13/38 (34%), Positives = 18/38 (47%), Gaps = 1/38 (2%)
Query: 136 PDRDYDFIVIGGGSSGAVVANRLSEVPNWRVLLIEAGG 173
D ++IGGG G A L+E V ++EAG
Sbjct: 1 MSMKMDVVIIGGGIVGLSAAYYLAER-GADVTVLEAGE 37
Score = 30.6 bits (69), Expect = 3.5
Identities = 9/25 (36%), Positives = 12/25 (48%)
Query: 58 PDRDYDFIVIGGGSSGAVVANRLSE 82
D ++IGGG G A L+E
Sbjct: 1 MSMKMDVVIIGGGIVGLSAAYYLAE 25
>gnl|CDD|232791 TIGR00031, UDP-GALP_mutase, UDP-galactopyranose mutase. This
enzyme is involved in the conversion of UDP-GALP into
UDP-GALF through a 2-keto intermediate. It contains FAD
as a cofactor. The gene is known as glf, ceoA, and rfbD.
It is known experimentally in E. coli, Mycobacterium
tuberculosis, and Klebsiella pneumoniae [Cell envelope,
Biosynthesis and degradation of surface polysaccharides
and lipopolysaccharides].
Length = 377
Score = 37.8 bits (88), Expect = 0.020
Identities = 15/31 (48%), Positives = 25/31 (80%), Gaps = 1/31 (3%)
Query: 140 YDFIVIGGGSSGAVVANRLSEVPNWRVLLIE 170
+D+I++G G SG V+AN L+++ N RVL++E
Sbjct: 2 FDYIIVGAGLSGIVLANILAQL-NKRVLVVE 31
Score = 33.2 bits (76), Expect = 0.51
Identities = 11/23 (47%), Positives = 19/23 (82%)
Query: 62 YDFIVIGGGSSGAVVANRLSEMN 84
+D+I++G G SG V+AN L+++N
Sbjct: 2 FDYIIVGAGLSGIVLANILAQLN 24
>gnl|CDD|235701 PRK06116, PRK06116, glutathione reductase; Validated.
Length = 450
Score = 37.4 bits (88), Expect = 0.031
Identities = 28/80 (35%), Positives = 35/80 (43%), Gaps = 24/80 (30%)
Query: 138 RDYDFIVIGGGSSGAVVANRLSEVPNWRVLLIEA---GGDEPT--------------GTQ 180
+DYD IVIGGGS G ANR + +V LIEA GG T G Q
Sbjct: 3 KDYDLIVIGGGSGGIASANRAAMYGA-KVALIEAKRLGG---TCVNVGCVPKKLMWYGAQ 58
Query: 181 IPSMFLNFLGSSIDYGYKTE 200
I F ++ + YG+
Sbjct: 59 IAEAFHDY---APGYGFDVT 75
Score = 35.5 bits (83), Expect = 0.13
Identities = 14/20 (70%), Positives = 15/20 (75%)
Query: 60 RDYDFIVIGGGSSGAVVANR 79
+DYD IVIGGGS G ANR
Sbjct: 3 KDYDLIVIGGGSGGIASANR 22
>gnl|CDD|240384 PTZ00367, PTZ00367, squalene epoxidase; Provisional.
Length = 567
Score = 37.5 bits (87), Expect = 0.033
Identities = 19/48 (39%), Positives = 28/48 (58%), Gaps = 6/48 (12%)
Query: 128 NRPLSR-----GFPDRDYDFIVIGGGSSGAVVANRLSEVPNWRVLLIE 170
NR LSR + DYD I++GG +G V+A LS+ +VL++E
Sbjct: 17 NRILSRLRFKPARTNYDYDVIIVGGSIAGPVLAKALSK-QGRKVLMLE 63
Score = 33.3 bits (76), Expect = 0.67
Identities = 16/40 (40%), Positives = 22/40 (55%), Gaps = 5/40 (12%)
Query: 50 NRPLSR-----GFPDRDYDFIVIGGGSSGAVVANRLSEMN 84
NR LSR + DYD I++GG +G V+A LS+
Sbjct: 17 NRILSRLRFKPARTNYDYDVIIVGGSIAGPVLAKALSKQG 56
>gnl|CDD|183292 PRK11728, PRK11728, hydroxyglutarate oxidase; Provisional.
Length = 393
Score = 37.1 bits (87), Expect = 0.036
Identities = 14/33 (42%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
Query: 139 DYDFIVIGGGSSGAVVANRLSEV-PNWRVLLIE 170
YDF++IGGG G A +L E P R+ ++E
Sbjct: 2 MYDFVIIGGGIVGLSTAMQLQERYPGARIAVLE 34
Score = 29.8 bits (68), Expect = 7.7
Identities = 11/22 (50%), Positives = 14/22 (63%)
Query: 61 DYDFIVIGGGSSGAVVANRLSE 82
YDF++IGGG G A +L E
Sbjct: 2 MYDFVIIGGGIVGLSTAMQLQE 23
>gnl|CDD|131515 TIGR02462, pyranose_ox, pyranose oxidase. Pyranose oxidase (also
called glucose 2-oxidase) converts D-glucose and
molecular oxygen to 2-dehydro-D-glucose and hydrogen
peroxide. Peroxide production is believed to be
important to the wood rot fungi in which this enzyme is
found for lignin degradation.
Length = 544
Score = 36.8 bits (85), Expect = 0.047
Identities = 24/82 (29%), Positives = 40/82 (48%), Gaps = 6/82 (7%)
Query: 521 ILLNTTVTRVIVDPLTKAAIG---VEFLTNGRLERLQAKNEVIVCAGAVDSPRILLLSGI 577
+L N TR++ + ++ I V L +G ++A V+ C GAV +P+IL+ SG
Sbjct: 231 LLTNHRCTRLVRNETNESEIEAALVRDLLSGDRFEIKADVYVLAC-GAVHNPQILVNSGF 289
Query: 578 GPREELRRLNIAPIHDLPGVGK 599
G N P+ P +G+
Sbjct: 290 GQLGRPDPTNPPPLL--PSLGR 309
Score = 33.3 bits (76), Expect = 0.59
Identities = 15/63 (23%), Positives = 28/63 (44%), Gaps = 1/63 (1%)
Query: 795 HQAGSCKMGPASDPSAVVSPELKVHGVDRLRVVDCSIMPAVTSGNTNAPAIMIAEKASDL 854
H AG+ ++G + + V + + KVH L V +P N ++ A K+++
Sbjct: 480 HLAGTTRIG-FDEQTTVANTDSKVHNFKNLYVGGNGNIPTAFGANPTLTSMCYAIKSAEY 538
Query: 855 IKQ 857
I
Sbjct: 539 IIN 541
>gnl|CDD|219686 pfam07992, Pyr_redox_2, Pyridine nucleotide-disulphide
oxidoreductase. This family includes both class I and
class II oxidoreductases and also NADH oxidases and
peroxidases. This domain is actually a small NADH
binding domain within a larger FAD binding domain.
Length = 283
Score = 36.2 bits (84), Expect = 0.060
Identities = 15/44 (34%), Positives = 21/44 (47%), Gaps = 2/44 (4%)
Query: 141 DFIVIGGGSSGAVVANRLSEVPNWRVLLIEAGGDEPT-GTQIPS 183
D ++IGGG +G A RL+ +V LIE G +P
Sbjct: 1 DVVIIGGGPAGLAAAIRLAR-LGLKVALIEREGGTCYNRGCLPK 43
>gnl|CDD|205628 pfam13450, NAD_binding_8, NAD(P)-binding Rossmann-like domain.
Length = 66
Score = 32.8 bits (76), Expect = 0.072
Identities = 10/31 (32%), Positives = 16/31 (51%), Gaps = 1/31 (3%)
Query: 144 VIGGGSSGAVVANRLSEVPNWRVLLIEAGGD 174
++G G SG V A L++ VL++E
Sbjct: 1 IVGAGLSGLVAAYLLAKR-GKDVLVLEKRDR 30
>gnl|CDD|130849 TIGR01789, lycopene_cycl, lycopene cyclase. This model represents
a family of bacterial lycopene cyclases catalyzing the
transformation of lycopene to carotene. These enzymes
are found in a limited spectrum of alpha and gamma
proteobacteria as well as Flavobacterium.
Length = 370
Score = 35.6 bits (82), Expect = 0.098
Identities = 15/33 (45%), Positives = 24/33 (72%), Gaps = 1/33 (3%)
Query: 141 DFIVIGGGSSGAVVANRLSEV-PNWRVLLIEAG 172
D I++GGG +G ++A RL P++R+ +IEAG
Sbjct: 1 DCIIVGGGLAGGLIALRLQRARPDFRIRVIEAG 33
>gnl|CDD|223717 COG0644, FixC, Dehydrogenases (flavoproteins) [Energy production
and conversion].
Length = 396
Score = 35.5 bits (82), Expect = 0.10
Identities = 12/35 (34%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
Query: 139 DYDFIVIGGGSSGAVVANRLSEVPNWRVLLIEAGG 173
+YD +++G G +G+ A RL++ VL++E G
Sbjct: 3 EYDVVIVGAGPAGSSAARRLAKA-GLDVLVLEKGS 36
Score = 29.3 bits (66), Expect = 8.3
Identities = 8/22 (36%), Positives = 16/22 (72%)
Query: 61 DYDFIVIGGGSSGAVVANRLSE 82
+YD +++G G +G+ A RL++
Sbjct: 3 EYDVVIVGAGPAGSSAARRLAK 24
>gnl|CDD|233671 TIGR01988, Ubi-OHases, Ubiquinone biosynthesis hydroxylase,
UbiH/UbiF/VisC/COQ6 family. This model represents a
family of FAD-dependent hydroxylases (monooxygenases)
which are all believed to act in the aerobic ubiquinone
biosynthesis pathway. A separate set of hydroxylases, as
yet undiscovered, are believed to be active under
anaerobic conditions. In E. coli three enzyme activities
have been described, UbiB (which acts first at position
6, see TIGR01982), UbiH (which acts at position 4,) and
UbiF (which acts at position 5,). UbiH and UbiF are
similar to one another and form the basis of this
subfamily. Interestingly, E. coli contains another
hydroxylase gene, called visC, that is highly similar to
UbiF, adjacent to UbiH and, when mutated, results in a
phenotype similar to that of UbiH (which has also been
named visB). Several other species appear to have three
homologs in this family, although they assort themselves
differently on phylogenetic trees (e.g. Xylella and
Mesorhizobium) making it difficult to ascribe a specific
activity to each one. Eukaryotes appear to have only a
single homolog in this subfamily (COQ6,) which
complements UbiH, but also possess a non-orthologous
gene, COQ7 which complements UbiF [Biosynthesis of
cofactors, prosthetic groups, and carriers, Menaquinone
and ubiquinone].
Length = 387
Score = 34.9 bits (81), Expect = 0.19
Identities = 12/32 (37%), Positives = 18/32 (56%)
Query: 141 DFIVIGGGSSGAVVANRLSEVPNWRVLLIEAG 172
D +++GGG G +A L+ +V LIEA
Sbjct: 1 DIVIVGGGPVGLALALALARSGGLKVALIEAT 32
>gnl|CDD|223651 COG0578, GlpA, Glycerol-3-phosphate dehydrogenase [Energy
production and conversion].
Length = 532
Score = 34.9 bits (81), Expect = 0.19
Identities = 17/47 (36%), Positives = 25/47 (53%), Gaps = 2/47 (4%)
Query: 133 RGFPDRDYDFIVIGGGSSGAVVANRLSEVPNWRVLLIEAGGDEPTGT 179
++D IVIGGG +GA +A + +V L+E GD +GT
Sbjct: 6 TRLRMEEFDVIVIGGGITGAGIARDAA-GRGLKVALVEK-GDLASGT 50
Score = 30.3 bits (69), Expect = 4.7
Identities = 10/23 (43%), Positives = 14/23 (60%)
Query: 55 RGFPDRDYDFIVIGGGSSGAVVA 77
++D IVIGGG +GA +A
Sbjct: 6 TRLRMEEFDVIVIGGGITGAGIA 28
>gnl|CDD|130850 TIGR01790, carotene-cycl, lycopene cyclase family protein. This
family includes lycopene beta and epsilion cyclases
(which form beta and delta carotene, respectively) from
bacteria and plants as well as the plant
capsanthin/capsorubin and neoxanthin cyclases which
appear to have evolved from the plant lycopene cyclases.
The plant lycopene epsilon cyclases also transform
neurosporene to alpha zeacarotene.
Length = 388
Score = 34.7 bits (80), Expect = 0.20
Identities = 16/36 (44%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
Query: 141 DFIVIGGGSSGAVVANRLSEVPNWRVLLIEAGGDEP 176
D VIGGG +G +A L+ P RV LIE P
Sbjct: 1 DLAVIGGGPAGLAIALELAR-PGLRVQLIEPHPPIP 35
>gnl|CDD|233412 TIGR01438, TGR, thioredoxin and glutathione reductase
selenoprotein. This homodimeric, FAD-containing member
of the pyridine nucleotide disulfide oxidoreductase
family contains a C-terminal motif Cys-SeCys-Gly, where
SeCys is selenocysteine encoded by TGA (in some sequence
reports interpreted as a stop codon). In some members of
this subfamily, Cys-SeCys-Gly is replaced by
Cys-Cys-Gly. The reach of the selenium atom at the
C-term arm of the protein is proposed to allow broad
substrate specificity.
Length = 484
Score = 34.8 bits (80), Expect = 0.22
Identities = 17/42 (40%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Query: 139 DYDFIVIGGGSSGAVVANRLSEVPNWRVLLIEAGGDEPTGTQ 180
DYD IVIGGGS G A + +V+L++ P GT+
Sbjct: 2 DYDLIVIGGGSGGLAAAKEAAAY-GAKVMLLDFVTPTPLGTR 42
Score = 30.2 bits (68), Expect = 4.9
Identities = 12/19 (63%), Positives = 12/19 (63%)
Query: 61 DYDFIVIGGGSSGAVVANR 79
DYD IVIGGGS G A
Sbjct: 2 DYDLIVIGGGSGGLAAAKE 20
>gnl|CDD|233669 TIGR01984, UbiH, 2-polyprenyl-6-methoxyphenol 4-hydroxylase. This
model represents the FAD-dependent monoxygenase
responsible for the second hydroxylation step in the
aerobic ubiquinone bioynthetic pathway. The scope of
this model is limited to the proteobacteria. This family
is closely related to the UbiF hydroxylase which
catalyzes the final hydroxylation step. The enzyme has
also been named VisB due to a mutant VISible light
sensitive phenotype [Biosynthesis of cofactors,
prosthetic groups, and carriers, Menaquinone and
ubiquinone].
Length = 382
Score = 34.2 bits (79), Expect = 0.26
Identities = 13/31 (41%), Positives = 19/31 (61%)
Query: 141 DFIVIGGGSSGAVVANRLSEVPNWRVLLIEA 171
D I++GGG G +A LS + ++ LIEA
Sbjct: 1 DVIIVGGGLVGLSLALALSRLGKIKIALIEA 31
>gnl|CDD|188533 TIGR04018, Bthiol_YpdA, putative bacillithiol system
oxidoreductase, YpdA family. Members of this protein
family, including YpdA from Bacillus subtilis, are
apparent oxidoreductases present only in species with an
active bacillithiol system. They have been suggested
actually to be thiol disulfide oxidoreductases (TDOR),
although the evidence is incomplete [Unknown function,
Enzymes of unknown specificity].
Length = 316
Score = 34.1 bits (79), Expect = 0.29
Identities = 29/98 (29%), Positives = 35/98 (35%), Gaps = 31/98 (31%)
Query: 511 RPIISRNNLHILLNTTVTRVIVDPLTKAAIGVEFLTNGRLERLQAKNEVIVCAGAVDSPR 570
R + R L+I L V +V K G E T QAKN VIV G D P
Sbjct: 77 RRVAERFKLNIRLYEEVLKV-----KKTDGGFEVTT--EKGTYQAKN-VIVATGYYDIP- 127
Query: 571 ILLLSGIGPREELRRLNIAPIHDLPGVGKNLHNHVAHF 608
LN+ P DLP V+H+
Sbjct: 128 -------------NLLNV-PGEDLP--------KVSHY 143
>gnl|CDD|218770 pfam05834, Lycopene_cycl, Lycopene cyclase protein. This family
consists of lycopene beta and epsilon cyclase proteins.
Carotenoids with cyclic end groups are essential
components of the photosynthetic membranes in all
plants, algae, and cyanobacteria. These lipid-soluble
compounds protect against photo-oxidation, harvest light
for photosynthesis, and dissipate excess light energy
absorbed by the antenna pigments. The cyclisation of
lycopene (psi, psi-carotene) is a key branch point in
the pathway of carotenoid biosynthesis. Two types of
cyclic end groups are found in higher plant carotenoids:
the beta and epsilon rings. Carotenoids with two beta
rings are ubiquitous, and those with one beta and one
epsilon ring are common; however, carotenoids with two
epsilon rings are rare.
Length = 374
Score = 34.2 bits (79), Expect = 0.32
Identities = 16/39 (41%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
Query: 141 DFIVIGGGSSGAVVANRLSE-VPNWRVLLIEAGGDEPTG 178
D +++G G +G ++A RL + P RVLLI+AG P
Sbjct: 1 DLVIVGAGLAGLLLALRLRQARPGLRVLLIDAGPGPPFP 39
>gnl|CDD|216176 pfam00890, FAD_binding_2, FAD binding domain. This family includes
members that bind FAD. This family includes the
flavoprotein subunits from succinate and fumarate
dehydrogenase, aspartate oxidase and the alpha subunit
of adenylylsulphate reductase.
Length = 401
Score = 34.2 bits (79), Expect = 0.33
Identities = 28/137 (20%), Positives = 43/137 (31%), Gaps = 25/137 (18%)
Query: 452 YLTVTQFPYHPPLSHSILQGA-------MELGMP-----------VRDLNGVSHTGFMIA 493
L P + ++ A LG+P +R L G+S T
Sbjct: 67 TLKGLDELADHPYVEAFVEAAPEAVDWLEALGVPFSRSTEDGHIDLRPLGGLSATWRTPH 126
Query: 494 QTTTRNGSRLSTSKAFLRPIISR---NNLHILLNTTVTRVIVDPLTKAAIG--VEFLTNG 548
R L T A L ++ + +IV+ G VE NG
Sbjct: 127 DVADRRRGTLGTGHALLARLLEGALKRGIDFQPRHPADDLIVE--DGRVTGVVVENRRNG 184
Query: 549 RLERLQAKNEVIVCAGA 565
R R++A V++ G
Sbjct: 185 REVRIRAIAGVLLATGG 201
>gnl|CDD|217590 pfam03486, HI0933_like, HI0933-like protein.
Length = 405
Score = 34.1 bits (79), Expect = 0.35
Identities = 17/37 (45%), Positives = 22/37 (59%), Gaps = 7/37 (18%)
Query: 140 YDFIVIGGGSSG---AVVANRLSEVPNWRVLLIEAGG 173
YD IVIGGG++G A+ A + RVLLI+ G
Sbjct: 1 YDVIVIGGGAAGLMAAISAAK----RGRRVLLIDKGK 33
>gnl|CDD|221798 pfam12831, FAD_oxidored, FAD dependent oxidoreductase. This family
of proteins contains FAD dependent oxidoreductases and
related proteins.
Length = 415
Score = 34.1 bits (79), Expect = 0.35
Identities = 15/36 (41%), Positives = 21/36 (58%), Gaps = 7/36 (19%)
Query: 141 DFIVIGGGSSG---AVVANRLSEVPNWRVLLIEAGG 173
D +V+GGG +G A+ A RL +VLL+E G
Sbjct: 1 DVVVVGGGPAGVAAAIAAARL----GAKVLLVERRG 32
>gnl|CDD|224992 COG2081, COG2081, Predicted flavoproteins [General function
prediction only].
Length = 408
Score = 33.7 bits (78), Expect = 0.40
Identities = 14/35 (40%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Query: 138 RDYDFIVIGGGSSGAVVANRLSEVPNWRVLLIEAG 172
+D I+IGGG +G + A ++ RVLLI+ G
Sbjct: 2 ERFDVIIIGGGPAGLMAAISAAK-AGRRVLLIDKG 35
>gnl|CDD|233689 TIGR02023, BchP-ChlP, geranylgeranyl reductase. This model
represents a group of geranylgeranyl reductases specific
for the biosyntheses of bacteriochlorophyll and
chlorophyll. It is unclear whether the processes of
isoprenoid ligation to the chlorin ring and reduction of
the geranylgeranyl chain to a phytyl chain are
necessarily ordered the same way in all species (see
introduction to ) [Biosynthesis of cofactors, prosthetic
groups, and carriers, Chlorophyll and
bacteriochlorphyll].
Length = 388
Score = 33.6 bits (77), Expect = 0.43
Identities = 18/45 (40%), Positives = 22/45 (48%), Gaps = 3/45 (6%)
Query: 140 YDFIVIGGGSSGAVVANRLSEVPNWRVLLIEAGGD--EPTGTQIP 182
YD VIGGG SGA A L+ +L+E +P G IP
Sbjct: 1 YDVAVIGGGPSGATAAETLARA-GIETILLERALSNIKPCGGAIP 44
>gnl|CDD|235584 PRK05732, PRK05732, 2-octaprenyl-6-methoxyphenyl hydroxylase;
Validated.
Length = 395
Score = 33.3 bits (77), Expect = 0.48
Identities = 18/48 (37%), Positives = 23/48 (47%), Gaps = 6/48 (12%)
Query: 139 DYDFIVIGGGSSGAVVA---NRLSEVPNWRVLLIEAGGDEPTGTQIPS 183
D I++GGG +GA +A +RLS V LIEA P P
Sbjct: 3 RMDVIIVGGGMAGATLALALSRLSH-GGLPVALIEA--FAPESDAHPG 47
>gnl|CDD|237221 PRK12835, PRK12835, 3-ketosteroid-delta-1-dehydrogenase; Reviewed.
Length = 584
Score = 33.6 bits (77), Expect = 0.50
Identities = 18/60 (30%), Positives = 29/60 (48%), Gaps = 1/60 (1%)
Query: 508 AFLRPIISRNNLHILLNTTVTRVIVDPLTKAAIGVEFLTNGRLERLQAKNEVIVCAGAVD 567
A LR + + + L++ +T +I DP A +G GR R+ A+ VI+ G D
Sbjct: 217 ARLRLALKDAGVPLWLDSPMTELITDP-DGAVVGAVVEREGRTLRIGARRGVILATGGFD 275
>gnl|CDD|233693 TIGR02032, GG-red-SF, geranylgeranyl reductase family. This model
represents a subfamily which includes geranylgeranyl
reductases involved in chlorophyll and
bacteriochlorophyll biosynthesis as well as other
related enzymes which may also act on geranylgeranyl
groups or related substrates [Biosynthesis of cofactors,
prosthetic groups, and carriers, Chlorophyll and
bacteriochlorphyll].
Length = 295
Score = 33.1 bits (76), Expect = 0.58
Identities = 15/31 (48%), Positives = 21/31 (67%), Gaps = 1/31 (3%)
Query: 140 YDFIVIGGGSSGAVVANRLSEVPNWRVLLIE 170
YD +V+G G +GA A RL++ RVLL+E
Sbjct: 1 YDVVVVGAGPAGASAAYRLAD-KGLRVLLLE 30
Score = 29.2 bits (66), Expect = 8.8
Identities = 10/21 (47%), Positives = 15/21 (71%)
Query: 62 YDFIVIGGGSSGAVVANRLSE 82
YD +V+G G +GA A RL++
Sbjct: 1 YDVVVVGAGPAGASAAYRLAD 21
>gnl|CDD|235798 PRK06416, PRK06416, dihydrolipoamide dehydrogenase; Reviewed.
Length = 462
Score = 33.2 bits (77), Expect = 0.61
Identities = 13/36 (36%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Query: 137 DRDYDFIVIGGGSSGAVVANRLSEVPNWRVLLIEAG 172
+YD IVIG G G V A R +++ +V ++E
Sbjct: 2 AFEYDVIVIGAGPGGYVAAIRAAQL-GLKVAIVEKE 36
Score = 32.0 bits (74), Expect = 1.5
Identities = 11/25 (44%), Positives = 15/25 (60%)
Query: 59 DRDYDFIVIGGGSSGAVVANRLSEM 83
+YD IVIG G G V A R +++
Sbjct: 2 AFEYDVIVIGAGPGGYVAAIRAAQL 26
>gnl|CDD|181346 PRK08275, PRK08275, putative oxidoreductase; Provisional.
Length = 554
Score = 33.1 bits (76), Expect = 0.68
Identities = 15/33 (45%), Positives = 22/33 (66%), Gaps = 1/33 (3%)
Query: 139 DYDFIVIGGGSSGAVVANRLSEV-PNWRVLLIE 170
+ D +VIGGG++G + A + E P RVLL+E
Sbjct: 9 ETDILVIGGGTAGPMAAIKAKERNPALRVLLLE 41
>gnl|CDD|234978 PRK01747, mnmC, bifunctional tRNA
(mnm(5)s(2)U34)-methyltransferase/FAD-dependent
cmnm(5)s(2)U34 oxidoreductase; Reviewed.
Length = 662
Score = 32.9 bits (76), Expect = 0.75
Identities = 15/40 (37%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
Query: 132 SRGFPDRDYDFIVIGGGSSGAVVANRLSEVPNWRVLLIEA 171
+R + D +IGGG +GA +A L+ W+V L EA
Sbjct: 253 ARPGSPKARDAAIIGGGIAGAALALALAR-RGWQVTLYEA 291
>gnl|CDD|178267 PLN02661, PLN02661, Putative thiazole synthesis.
Length = 357
Score = 32.1 bits (73), Expect = 1.1
Identities = 14/32 (43%), Positives = 21/32 (65%)
Query: 139 DYDFIVIGGGSSGAVVANRLSEVPNWRVLLIE 170
D D +++G GS+G A LS+ PN +V +IE
Sbjct: 92 DTDVVIVGAGSAGLSCAYELSKNPNVKVAIIE 123
>gnl|CDD|205931 pfam13757, VIT_2, Vault protein inter-alpha-trypsin domain.
Inter-alpha-trypsin inhibitors (ITIs) consist of one
light chain and a variable set of heavy chains. ITIs
play a role in extracellular matrix (ECM) stabilisation
and tumour metastasis as well as in plasma protease
inhibition. The vault protein inter-alpha-trypsin (VIT)
domain described here is found to the N-terminus of a
von Willebrand factor type A domain (pfam00092) in ITI
heavy chains (ITIHs) and their precursors.
Length = 78
Score = 29.7 bits (67), Expect = 1.4
Identities = 19/72 (26%), Positives = 28/72 (38%), Gaps = 4/72 (5%)
Query: 689 NSTPVPQRTISIFPTVLHPKSRGYLTLKDNNPQTPPLIFARYLTHPDDVKTLVDGI--KI 746
TP+P + + V R +L N + P+ +P D T V G KI
Sbjct: 8 TRTPLPLKASRVSACVNGYSLRTTASLTYENDEDGPVEGV--FVYPLDEGTTVVGFEAKI 65
Query: 747 AIRLTQTAALQK 758
A R T L++
Sbjct: 66 AGRTVYTQLLEQ 77
>gnl|CDD|215314 PLN02576, PLN02576, protoporphyrinogen oxidase.
Length = 496
Score = 31.9 bits (73), Expect = 1.5
Identities = 15/49 (30%), Positives = 20/49 (40%), Gaps = 2/49 (4%)
Query: 136 PDRDYDFIVIGGGSSGAVVANRLSEVPNWRVLLIEAGGDEPTGTQIPSM 184
D V+G G SG A L+ VL+ EA + G I S+
Sbjct: 9 AASSKDVAVVGAGVSGLAAAYALASKHGVNVLVTEA--RDRVGGNITSV 55
>gnl|CDD|235373 PRK05249, PRK05249, soluble pyridine nucleotide transhydrogenase;
Provisional.
Length = 461
Score = 31.7 bits (73), Expect = 2.0
Identities = 22/56 (39%), Positives = 27/56 (48%), Gaps = 13/56 (23%)
Query: 136 PDRDYDFIVIG---GGSSGAVVANRLSEVPNWRVLLIEA-----GGDEPTGTQIPS 183
DYD +VIG G A+ A +L + RV +IE GG TGT IPS
Sbjct: 2 HMYDYDLVVIGSGPAGEGAAMQAAKLGK----RVAVIERYRNVGGGCTHTGT-IPS 52
>gnl|CDD|236001 PRK07364, PRK07364, 2-octaprenyl-6-methoxyphenyl hydroxylase;
Validated.
Length = 415
Score = 31.1 bits (71), Expect = 2.6
Identities = 13/36 (36%), Positives = 18/36 (50%), Gaps = 1/36 (2%)
Query: 136 PDRDYDFIVIGGGSSGAVVANRLSEVPNWRVLLIEA 171
YD ++GGG G +A L + R+ LIEA
Sbjct: 15 RSLTYDVAIVGGGIVGLTLAAALKD-SGLRIALIEA 49
>gnl|CDD|239985 cd04612, CBS_pair_SpoIVFB_EriC_assoc, This cd contains two tandem
repeats of the cystathionine beta-synthase (CBS pair)
domains in association with either the SpoIVFB domain
(sporulation protein, stage IV cell wall formation, F
locus, promoter-distal B) or the chloride channel
protein EriC. SpoIVFB is one of 4 proteins involved in
endospore formation; the others are SpoIVFA (sporulation
protein, stage IV cell wall formation, F locus,
promoter-proximal A), BofA (bypass-of-forespore A ), and
SpoIVB (sporulation protein, stage IV cell wall
formation, B locus). SpoIVFB is negatively regulated by
SpoIVFA and BofA and activated by SpoIVB. It is thought
that SpoIVFB, SpoIVFA, and BofA are located in the
mother-cell membrane that surrounds the forespore and
that SpoIVB is secreted from the forespore into the
space between the two where it activates SpoIVFB. EriC
is involved in inorganic ion transport and metabolism.
CBS is a small domain originally identified in
cystathionine beta-synthase and subsequently found in a
wide range of different proteins. CBS domains usually
come in tandem repeats, which associate to form a
so-called Bateman domain or a CBS pair which is
reflected in this model. The interface between the two
CBS domains forms a cleft that is a potential ligand
binding site. The CBS pair coexists with a variety of
other functional domains. It has been proposed that the
CBS domain may play a regulatory role, although its
exact function is unknown.
Length = 111
Score = 29.1 bits (66), Expect = 2.9
Identities = 20/82 (24%), Positives = 26/82 (31%), Gaps = 23/82 (28%)
Query: 282 AIRRNTGAENHQAGSCKMGPASDPSAVVSPE---------LKVHGVDRLRVVDCSIMPAV 332
IRR DP SP+ + + RL VVD
Sbjct: 43 DIRRVPAEGREATVLVGDVMTRDP-VTASPDETLRDALKRMAERDIGRLPVVD------- 94
Query: 333 TSGSAPLGGIQALRITRQDLVR 354
S L GI ++R DL+R
Sbjct: 95 --DSGRLVGI----VSRSDLLR 110
>gnl|CDD|173931 cd08172, GlyDH-like1, Glycerol dehydrogenases-like. Glycerol
dehydrogenases-like. The proteins in this family have
not been characterized, but they show sequence homology
with glycerol dehydrogenase. Glycerol dehydrogenases
(GlyDH) is a key enzyme in the glycerol dissimilation
pathway. In anaerobic conditions, many microorganisms
utilize glycerol as a source of carbon through coupled
oxidative and reductive pathways. One of the pathways
involves the oxidation of glycerol to dihydroxyacetone
with the reduction of NAD+ to NADH catalyzed by glycerol
dehydrogenases. Dihydroxyacetone is then phosphorylated
by dihydroxyacetone kinase and enters the glycolytic
pathway for further degradation. The activity of GlyDH
is zinc-dependent. The zinc ion plays a role in
stabilizing an alkoxide intermediate at the active site.
Length = 347
Score = 31.0 bits (71), Expect = 3.0
Identities = 18/48 (37%), Positives = 23/48 (47%), Gaps = 13/48 (27%)
Query: 59 DRDYDFIV-IGGGSS---GAVVANRLSEMNTCNCP-VTQPGPTLASTC 101
+ D I+ IGGG VA+RL P +T P TLA+TC
Sbjct: 74 ENGADVIIGIGGGKVLDTAKAVADRL------GVPVITVP--TLAATC 113
>gnl|CDD|216949 pfam02254, TrkA_N, TrkA-N domain. This domain is found in a wide
variety of proteins. These protein include potassium
channels, phosphoesterases, and various other
transporters. This domain binds to NAD.
Length = 116
Score = 29.5 bits (67), Expect = 3.1
Identities = 10/29 (34%), Positives = 15/29 (51%), Gaps = 1/29 (3%)
Query: 142 FIVIGGGSSGAVVANRLSEVPNWRVLLIE 170
I+IG G G +A L E V++I+
Sbjct: 1 IIIIGYGRVGRSLAEELRE-GGPDVVVID 28
>gnl|CDD|153210 cd01653, GATase1, Type 1 glutamine amidotransferase (GATase1)-like
domain. Type 1 glutamine amidotransferase
(GATase1)-like domain. This group includes proteins
similar to Class I glutamine amidotransferases, the
intracellular PH1704 from Pyrococcus horikoshii, the
C-terminal of the large catalase: Escherichia coli
HP-II, Sinorhizobium meliloti Rm1021 ThuA. and, the A4
beta-galactosidase middle domain. The majority of
proteins in this group have a reactive Cys found in the
sharp turn between a beta strand and an alpha helix
termed the nucleophile elbow. For Class I glutamine
amidotransferases proteins which transfer ammonia from
the amide side chain of glutamine to an acceptor
substrate, this Cys forms a Cys-His-Glu catalytic triad
in the active site. Glutamine amidotransferases
activity can be found in a range of biosynthetic enzymes
included in this cd: glutamine amidotransferase,
formylglycinamide ribonucleotide, GMP synthetase,
anthranilate synthase component II, glutamine-dependent
carbamoyl phosphate synthase, cytidine triphosphate
synthetase, gamma-glutamyl hydrolase, imidazole glycerol
phosphate synthase and, cobyric acid synthase. For
Pyrococcus horikoshii PH1704, the Cys of the nucleophile
elbow together with a different His and, a Glu from an
adjacent monomer form a catalytic triad different from
the typical GATase1 triad. The E. coli HP-II C-terminal
domain, S. meliloti Rm1021 ThuA and the A4
beta-galactosidase middle domain lack the catalytic
triad typical GATaseI domains. GATase1-like domains can
occur either as single polypeptides, as in Class I
glutamine amidotransferases, or as domains in a much
larger multifunctional synthase protein, such as CPSase.
Length = 115
Score = 29.1 bits (65), Expect = 3.9
Identities = 12/75 (16%), Positives = 23/75 (30%), Gaps = 2/75 (2%)
Query: 101 CGGSAYMLFMGLLEVFIRSQCDLE--DPCNRPLSRGFPDRDYDFIVIGGGSSGAVVANRL 158
G + L+ + +++ P P+ DYD +++ GG R
Sbjct: 6 FPGFEELELASPLDALREAGAEVDVVSPDGGPVESDVDLDDYDGLILPGGPGTPDDLARD 65
Query: 159 SEVPNWRVLLIEAGG 173
+ AG
Sbjct: 66 EALLALLREAAAAGK 80
>gnl|CDD|180854 PRK07121, PRK07121, hypothetical protein; Validated.
Length = 492
Score = 29.9 bits (68), Expect = 6.8
Identities = 15/46 (32%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Query: 519 LHILLNTTVTRVIVDPLTKAAIGVEFLTNGRLERLQAKNEVIVCAG 564
+ I +T TR+IVD +GVE G ++A+ V++ AG
Sbjct: 192 VQIRYDTRATRLIVDD-DGRVVGVEARRYGETVAIRARKGVVLAAG 236
>gnl|CDD|226103 COG3573, COG3573, Predicted oxidoreductase [General function
prediction only].
Length = 552
Score = 29.8 bits (67), Expect = 6.9
Identities = 18/55 (32%), Positives = 24/55 (43%), Gaps = 3/55 (5%)
Query: 61 DYDFIVIGGGSSGAVVANRLSEMNTCNCPVTQPGPTLASTCGGSAYMLFMGLLEV 115
D IV+G G +G V A L++ + Q G GG A+ F GL V
Sbjct: 5 TADVIVVGAGLAGLVAAAELADAGKRVLILDQEG---EQNLGGQAFWSFGGLFLV 56
>gnl|CDD|173960 cd08550, GlyDH-like, Glycerol_dehydrogenase-like. Families of
proteins related to glycerol dehydrogenases. Glycerol
dehydrogenases (GlyDH) is a key enzyme in the glycerol
dissimilation pathway. In anaerobic conditions, many
microorganisms utilize glycerol as a source of carbon
through coupled oxidative and reductive pathways. One of
the pathways involves the oxidation of glycerol to
dihydroxyacetone with the reduction of NAD+ to NADH
catalyzed by glycerol dehydrogenases. Dihydroxyacetone
is then phosphorylated by dihydroxyacetone kinase and
enters the glycolytic pathway for further degradation.
The activity of GlyDH is zinc-dependent. The zinc ion
plays a role in stabilizing an alkoxide intermediate at
the active site. Some subfamilies have not been
characterized till now.
Length = 349
Score = 29.8 bits (67), Expect = 7.3
Identities = 18/59 (30%), Positives = 28/59 (47%), Gaps = 11/59 (18%)
Query: 50 NRPLSRGFPDRDYDFIV-IGGGSS---GAVVANRLSEMNTCNCPVTQPGPTLASTCGGS 104
G +++ D I+ +GGG + VA+RL + P+ PT+ASTC S
Sbjct: 66 VVKALCGAEEQEADVIIGVGGGKTLDTAKAVADRL------DKPIVIV-PTIASTCAAS 117
>gnl|CDD|185416 PTZ00052, PTZ00052, thioredoxin reductase; Provisional.
Length = 499
Score = 29.8 bits (67), Expect = 7.9
Identities = 10/17 (58%), Positives = 11/17 (64%)
Query: 61 DYDFIVIGGGSSGAVVA 77
YD +VIGGGS G A
Sbjct: 5 MYDLVVIGGGSGGMAAA 21
Score = 29.8 bits (67), Expect = 7.9
Identities = 10/17 (58%), Positives = 11/17 (64%)
Query: 139 DYDFIVIGGGSSGAVVA 155
YD +VIGGGS G A
Sbjct: 5 MYDLVVIGGGSGGMAAA 21
>gnl|CDD|236887 PRK11259, solA, N-methyltryptophan oxidase; Provisional.
Length = 376
Score = 29.4 bits (67), Expect = 9.3
Identities = 13/35 (37%), Positives = 17/35 (48%), Gaps = 1/35 (2%)
Query: 137 DRDYDFIVIGGGSSGAVVANRLSEVPNWRVLLIEA 171
YD IVIG GS G+ L+ RVL ++
Sbjct: 1 TMRYDVIVIGLGSMGSAAGYYLARR-GLRVLGLDR 34
>gnl|CDD|144338 pfam00698, Acyl_transf_1, Acyl transferase domain.
Length = 319
Score = 29.3 bits (66), Expect = 9.6
Identities = 11/62 (17%), Positives = 18/62 (29%), Gaps = 5/62 (8%)
Query: 450 GGYLTVTQFPYHPPLSHSILQGAMELGMPVRDLNGVSHTGFMIAQTTTRNGSRLSTSKAF 509
GYL + HP L ++ + L G +I + + A
Sbjct: 259 QGYLVFVEVSPHPVLLAAVEETLKSADGKDATL-----VGTLIRDQGDLVTFLYALAVAH 313
Query: 510 LR 511
L
Sbjct: 314 LT 315
>gnl|CDD|213618 TIGR01424, gluta_reduc_2, glutathione-disulfide reductase, plant.
The tripeptide glutathione is an important reductant,
e.g., for maintaining the cellular thiol/disulfide
status and for protecting against reactive oxygen
species such as hydrogen peroxide.
Glutathione-disulfide reductase regenerates reduced
glutathione from oxidized glutathione (glutathione
disulfide) + NADPH. This model represents one of two
closely related subfamilies of glutathione-disulfide
reductase. Both are closely related to trypanothione
reductase, and separate models are built so each of the
three can describe proteins with conserved function.
This model describes glutathione-disulfide reductases
of plants and some bacteria, including cyanobacteria
[Energy metabolism, Electron transport].
Length = 446
Score = 29.4 bits (66), Expect = 9.8
Identities = 13/21 (61%), Positives = 14/21 (66%), Gaps = 1/21 (4%)
Query: 61 DYDFIVIGGGSSGAVVANRLS 81
DYD VIG G SG V A RL+
Sbjct: 2 DYDLFVIGAG-SGGVRAARLA 21
Score = 29.4 bits (66), Expect = 9.8
Identities = 13/21 (61%), Positives = 14/21 (66%), Gaps = 1/21 (4%)
Query: 139 DYDFIVIGGGSSGAVVANRLS 159
DYD VIG G SG V A RL+
Sbjct: 2 DYDLFVIGAG-SGGVRAARLA 21
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.320 0.136 0.428
Gapped
Lambda K H
0.267 0.0692 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 44,735,488
Number of extensions: 4442816
Number of successful extensions: 3973
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3928
Number of HSP's successfully gapped: 119
Length of query: 868
Length of database: 10,937,602
Length adjustment: 105
Effective length of query: 763
Effective length of database: 6,280,432
Effective search space: 4791969616
Effective search space used: 4791969616
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 63 (28.1 bits)