RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy1205
(868 letters)
>3fim_B ARYL-alcohol oxidase; AAO, lignin degradation, oxidoreductase,
flavoprotein; HET: FAD; 2.55A {Pleurotus eryngii}
Length = 566
Score = 565 bits (1459), Expect = 0.0
Identities = 125/502 (24%), Positives = 211/502 (42%), Gaps = 54/502 (10%)
Query: 390 VLGGTSVLNGMMYIRGSRADYDNWAK-AGNPGWSYQDVLPYFLKSEDNQ-------QATM 441
+LGG+S ++ M+ +RGS D+D +A G+ GW++ ++ + K+E +
Sbjct: 83 MLGGSSSVHYMVMMRGSTEDFDRYAAVTGDEGWNWDNIQQFVRKNEMVVPPADNHNTSGE 142
Query: 442 MDQGFHGVGGYLTVTQFPYHPPLSHSILQGAMELGMPV---RDLNGVSHTGFMIAQTTTR 498
HG G ++++ + PL +L E D+ G + +
Sbjct: 143 FIPAVHGTNGSVSISLPGFPTPLDDRVLATTQEQSEEFFFNPDMGTGHPLGISWSIASVG 202
Query: 499 NGSRLSTSKAFLRPIISRNNLHILLNTTVTRVIVDPLTKA-----AIGVEFLTNGRLERL 553
NG R S+S A+LRP SR NL +L+N VT+++ T + +
Sbjct: 203 NGQRSSSSTAYLRPAQSRPNLSVLINAQVTKLVNSGTTNGLPAFRCVEYAEQEGAPTTTV 262
Query: 554 QAKNEVIVCAGAVDSPRILLLSGIGPREELRRLNIAPIHDLPGVGKNLHNHVAHFLNFFI 613
AK EV++ AG+V +P +L LSGIG +L + I I + P VG+NL +H+ FF+
Sbjct: 263 CAKKEVVLSAGSVGTPILLQLSGIGDENDLSSVGIDTIVNNPSVGRNLSDHLLLPAAFFV 322
Query: 614 NDTDT-------TALNWATAMEYLLFRDGLMSGTGLSEVTGFVHSR------LSNPAEDN 660
N T ++ ++ R G ++ ++ ++ + P
Sbjct: 323 NSNQTFDNIFRDSSEFNVDLDQWTNTRTGPLT-ALIANHLAWLRLPSNSSIFQTFPDPAA 381
Query: 661 PDLQIFFSGYLANCARTGQVGERSDGMNNSTPVPQRTISIFPTVLHPKSRGYLTLKDNNP 720
+ +N + P +S+ ++ P +RG + L +NP
Sbjct: 382 GPNSAHWETIFSNQWFHPAIPR---------PDTGSFMSVTNALISPVARGDIKLATSNP 432
Query: 721 QTPPLIFARYLTHPDDVKTLVDGIKIAIRLTQTAALQKYGFRIDTTPVKGCENLPFGC-- 778
PLI +YL+ D+ T++ +K +R A + P
Sbjct: 433 FDKPLINPQYLSTEFDIFTMIQAVKSNLRFLSGQAWADFV---------IRPFDP-RLRD 482
Query: 779 ---DAYWECAIRRNTGAENHQAGSCKMGPASDPSAVVSPELKVHGVDRLRVVDCSIMPAV 835
DA E IR N H G+ M P VV P+LKV GVD LR+VD SI+P
Sbjct: 483 PTDDAAIESYIRDNANTIFHPVGTASMSPRGASWGVVDPDLKVKGVDGLRIVDGSILPFA 542
Query: 836 TSGNTNAPAIMIAEKASDLIKQ 857
+ +T P ++ ++ +DLIK
Sbjct: 543 PNAHTQGPIYLVGKQGADLIKA 564
Score = 122 bits (309), Expect = 3e-29
Identities = 30/86 (34%), Positives = 48/86 (55%), Gaps = 7/86 (8%)
Query: 139 DYDFIVIGGGSSGAVVANRLSEVPNWRVLLIEAGG--DEPTGTQIPSMFLN-FLGSSIDY 195
D+D++V+G G++G VVA RL+E P+ VL++EAG + G + P + S D+
Sbjct: 2 DFDYVVVGAGNAGNVVAARLTEDPDVSVLVLEAGVSDENVLGAEAPLLAPGLVPNSIFDW 61
Query: 196 GYKTEPEDMACLNNEERRCNWPRGKV 221
Y T + A N R +PRG++
Sbjct: 62 NYTTTAQ--AGYNG--RSIAYPRGRM 83
Score = 99.2 bits (248), Expect = 1e-21
Identities = 23/55 (41%), Positives = 28/55 (50%)
Query: 281 CAIRRNTGAENHQAGSCKMGPASDPSAVVSPELKVHGVDRLRVVDCSIMPAVTSG 335
IR N H G+ M P VV P+LKV GVD LR+VD SI+P +
Sbjct: 491 SYIRDNANTIFHPVGTASMSPRGASWGVVDPDLKVKGVDGLRIVDGSILPFAPNA 545
Score = 70.3 bits (173), Expect = 1e-12
Identities = 18/62 (29%), Positives = 28/62 (45%), Gaps = 7/62 (11%)
Query: 222 PNWRVLLIEAGG--DEPTGTQIPSMFLN-FLGSSIDYGYKTEPEDMACLNNEERRCNWPR 278
P+ VL++EAG + G + P + S D+ Y T + A N R +PR
Sbjct: 25 PDVSVLVLEAGVSDENVLGAEAPLLAPGLVPNSIFDWNYTTTAQ--AGYNG--RSIAYPR 80
Query: 279 GK 280
G+
Sbjct: 81 GR 82
Score = 54.1 bits (131), Expect = 1e-07
Identities = 12/22 (54%), Positives = 19/22 (86%)
Query: 61 DYDFIVIGGGSSGAVVANRLSE 82
D+D++V+G G++G VVA RL+E
Sbjct: 2 DFDYVVVGAGNAGNVVAARLTE 23
>3q9t_A Choline dehydrogenase and related flavoproteins;
glucose-methanol-choline oxidoreductase family, formate
OXID formyl-FAD, oxidoreductase; HET: FAY; 2.24A
{Aspergillus oryzae}
Length = 577
Score = 539 bits (1390), Expect = 0.0
Identities = 113/500 (22%), Positives = 192/500 (38%), Gaps = 45/500 (9%)
Query: 390 VLGGTSVLNGMMYIRGSRADYDNWAKAGNPGWSYQDVLPYFLKSEDNQQ---ATMMDQGF 446
LGG+S LN ++ G +A +D W + G W++ ++PY KS +
Sbjct: 89 TLGGSSSLNYFTWVPGHKATFDQWEEFGGKEWTWDPLVPYLRKSATYHDDPRLYSPELEK 148
Query: 447 HGVGGYLTVTQFPYHP---PLSHSILQGAMELGMPV-RDLNGVSHTGFMIAQTTTRNGSR 502
G GG + ++ P ++ + +G P+ ++ G T G R
Sbjct: 149 IGGGGPIPISHAELIDEMAPFRENLTKAWKSMGQPLIENIYDGEMDGLTHCCDTIYRGQR 208
Query: 503 LSTSKAFLRPIISRNNLHILLNTTVTRVIVDPLTKAAIGVEFLT-NGRLERLQAKNEVIV 561
S +FL + ++ N+ I+ R+I++ + GV +T G A EVI+
Sbjct: 209 ---SGSFL-FVKNKPNITIVPEVHSKRLIINEADRTCKGVTVVTAAGNELNFFADREVIL 264
Query: 562 CAGAVDSPRILLLSGIGPREELRRLNIAPIHDLPGVGKNLHNHVAHFLNFFINDTDTT-- 619
G ++P++L+LSGIGP EL R I I D VG+NL +H + D
Sbjct: 265 SQGVFETPKLLMLSGIGPTRELSRHGINTIVDSRHVGQNLMDHPGVPFVLRVKDGFGMDD 324
Query: 620 ------ALNWATAMEYLLFRDGLMSGTGLSEVTGFVHSRLSNPAEDNPDLQIFFSGYLAN 673
A Y R G + +GL E+ GF + +G
Sbjct: 325 VLLRHGPKRDAVVSAYNKNRSGPVG-SGLLELVGFPRIDKYLEKDAEYRKAKAANGGKDP 383
Query: 674 CARTGQ-------VGERSDGMNNSTPVPQR--TISIFPTVLHPKSR-GYLTLKDNNPQTP 723
+ GQ V P P+ +++ ++ P S G +TL +P
Sbjct: 384 FSPLGQPHFELDFVCMFGTAFQWHFPTPKTGDHLTVVVDLVRPISDPGEVTLNSADPFQQ 443
Query: 724 PLIFARYLTHPDDVKTLVDGIKIAIR-LTQTAALQKYGFRIDTTPVKGCENLP---FGCD 779
P I + + D+ + +GI+ + L + + E D
Sbjct: 444 PNINLNFFANDLDIIAMREGIRFSYDLLFKGEGFKDLV---------ESEYPWEMPLDSD 494
Query: 780 AYWECAIRRNTGAENHQAGSCKMGPASDPSAVVSPELKVHGVDRLRVVDCSIMPAVTSGN 839
A+ H G+ ++ + VV P+LKVHG+ +LRV D S++P +
Sbjct: 495 KEMHRAVLDRCQTAFHPTGTARLSK-NIDQGVVDPKLKVHGIKKLRVADASVIPIIPDCR 553
Query: 840 TNAPAIMIAEKASDLIKQQW 859
+ EK +D+IK +
Sbjct: 554 IQNSVYAVGEKCADMIKAEH 573
Score = 120 bits (304), Expect = 1e-28
Identities = 31/87 (35%), Positives = 44/87 (50%), Gaps = 9/87 (10%)
Query: 140 YDFIVIGGGSSGAVVANRLSEVPNWRVLLIEAGGDEPTG---TQIPSMFLNFLGSSIDYG 196
+DF+++GGG++G VA RL+E PN VL++EAG P PS ++ S D+
Sbjct: 7 FDFVIVGGGTAGNTVAGRLAENPNVTVLIVEAGIGNPEDIPEITTPSSAMDLRNSKYDWA 66
Query: 197 YKTEPEDMACLNNEERRCNWP--RGKV 221
YKT + R P RGK
Sbjct: 67 YKTTMVRR--DDY--ERIEKPNTRGKT 89
Score = 91.9 bits (229), Expect = 2e-19
Identities = 17/55 (30%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
Query: 281 CAIRRNTGAENHQAGSCKMGPASDPSAVVSPELKVHGVDRLRVVDCSIMPAVTSG 335
A+ H G+ ++ + VV P+LKVHG+ +LRV D S++P +
Sbjct: 499 RAVLDRCQTAFHPTGTARLSK-NIDQGVVDPKLKVHGIKKLRVADASVIPIIPDC 552
Score = 69.5 bits (171), Expect = 2e-12
Identities = 20/64 (31%), Positives = 26/64 (40%), Gaps = 9/64 (14%)
Query: 222 PNWRVLLIEAGGDEPTG---TQIPSMFLNFLGSSIDYGYKTEPEDMACLNNEERRCNWP- 277
PN VL++EAG P PS ++ S D+ YKT + R P
Sbjct: 29 PNVTVLIVEAGIGNPEDIPEITTPSSAMDLRNSKYDWAYKTTMVRR--DDY--ERIEKPN 84
Query: 278 -RGK 280
RGK
Sbjct: 85 TRGK 88
Score = 53.4 bits (129), Expect = 2e-07
Identities = 11/21 (52%), Positives = 18/21 (85%)
Query: 62 YDFIVIGGGSSGAVVANRLSE 82
+DF+++GGG++G VA RL+E
Sbjct: 7 FDFVIVGGGTAGNTVAGRLAE 27
>1gpe_A Protein (glucose oxidase); oxidoreductase(flavoprotein); HET: NAG
BMA MAN FAD; 1.80A {Penicillium amagasakiense} SCOP:
c.3.1.2 d.16.1.1
Length = 587
Score = 539 bits (1390), Expect = 0.0
Identities = 110/495 (22%), Positives = 190/495 (38%), Gaps = 39/495 (7%)
Query: 390 VLGGTSVLNGMMYIRGSRADYDNWAKA-GNPGWSYQDVLPYFLKSEDNQ--------QAT 440
LGG++++NG + R + D+W K G GW++ ++ Y K+E +
Sbjct: 103 GLGGSTLINGDSWTRPDKVQIDSWEKVFGMEGWNWDNMFEYMKKAEAARTPTAAQLAAGH 162
Query: 441 MMDQGFHGVGGYLTVTQFPYHP---PLSHSILQGAMELGMPV-RDLNGVSHTGFMIAQ-T 495
+ HG G + P+ +++ LG+PV +D G +
Sbjct: 163 SFNATCHGTNGTVQSGARDNGQPWSPIMKALMNTVSALGVPVQQDFLCGHPRGVSMIMNN 222
Query: 496 TTRNGSRLSTSKAFLRPIISRNNLHILLNTTVTRVIVDPLT--KAAIGVEFLTNGRLER- 552
N R+ ++A+L P R+NL IL V +V+ A+GV F TN +
Sbjct: 223 LDENQVRVDAARAWLLPNYQRSNLEILTGQMVGKVLFKQTASGPQAVGVNFGTNKAVNFD 282
Query: 553 LQAKNEVIVCAGAVDSPRILLLSGIGPREELRRLNIAPIHDLPGVGKNLHNHVAHFLNFF 612
+ AK+EV++ AG+ SP IL SGIG + L + N+ + DLP VG N+ + ++
Sbjct: 283 VFAKHEVLLAAGSAISPLILEYSGIGLKSVLDQANVTQLLDLP-VGINMQDQTTTTVSSR 341
Query: 613 INDTDTTALNWAT-------AMEYLLFRDGLMSGTGLSEVTGFVHSRLSNPAEDNPDLQI 665
+ +Y L++ T L + +R +Q
Sbjct: 342 ASSAGAGQGQAVFFANFTETFGDYAPQARDLLN-TKLDQWAEETVARGGFHNVTALKVQY 400
Query: 666 FFSGYLANCARTGQVGERSDGMNNSTPVPQRTISIFPTVLHPKSRGYLTLKDNNPQT-PP 724
+ + + I+ L P +RG + + ++P
Sbjct: 401 ENYRNW--------LLDEDVAFAELFMDTEGKINFDLWDLIPFTRGSVHILSSDPYLWQF 452
Query: 725 LIFARYLTHPDDVKTLVDGIKIAIRLTQTAALQKYGFRIDTTPVKGCENLPFGCDAYWEC 784
++ + D+ K+A LT A+++Y +T P G + + W
Sbjct: 453 ANDPKFFLNEFDLLGQAAASKLARDLTSQGAMKEYFAG-ETLP--GYNLVQNATLSQWSD 509
Query: 785 AIRRNTGAENHQAGSCKMGPASDPSAVVSPELKVHGVDRLRVVDCSIMPAVTSGNTNAPA 844
+ +N H SC M + VV KV+G LRV+D SI P S +
Sbjct: 510 YVLQNFRPNWHAVSSCSMMS-RELGGVVDATAKVYGTQGLRVIDGSIPPTQVSSHVMTIF 568
Query: 845 IMIAEKASDLIKQQW 859
+A K +D I +
Sbjct: 569 YGMALKVADAILDDY 583
Score = 131 bits (332), Expect = 5e-32
Identities = 33/102 (32%), Positives = 49/102 (48%), Gaps = 11/102 (10%)
Query: 125 DPCNRPLS--RGFPDRDYDFIVIGGGSSGAVVANRLSEVPNWRVLLIEAGGDEPTG---T 179
D + LS + YD+I+ GGG +G VA +L+E P +VL+IE G E
Sbjct: 8 DVQSSLLSDPSKVAGKTYDYIIAGGGLTGLTVAAKLTENPKIKVLVIEKGFYESNDGAII 67
Query: 180 QIPSMFLNFLGSSIDYGYKTEPEDMACLNNEERRCNWPRGKV 221
+ P+ + G+++D Y T P +NN R N GK
Sbjct: 68 EDPNAYGQIFGTTVDQNYLTVPL----INN--RTNNIKAGKG 103
Score = 96.5 bits (241), Expect = 8e-21
Identities = 18/56 (32%), Positives = 23/56 (41%), Gaps = 1/56 (1%)
Query: 280 KCAIRRNTGAENHQAGSCKMGPASDPSAVVSPELKVHGVDRLRVVDCSIMPAVTSG 335
+ +N H SC M + VV KV+G LRV+D SI P S
Sbjct: 508 SDYVLQNFRPNWHAVSSCSMMS-RELGGVVDATAKVYGTQGLRVIDGSIPPTQVSS 562
Score = 77.2 bits (191), Expect = 9e-15
Identities = 19/62 (30%), Positives = 28/62 (45%), Gaps = 9/62 (14%)
Query: 222 PNWRVLLIEAGGDEPTG---TQIPSMFLNFLGSSIDYGYKTEPEDMACLNNEERRCNWPR 278
P +VL+IE G E + P+ + G+++D Y T P +NN R N
Sbjct: 47 PKIKVLVIEKGFYESNDGAIIEDPNAYGQIFGTTVDQNYLTVPL----INN--RTNNIKA 100
Query: 279 GK 280
GK
Sbjct: 101 GK 102
Score = 56.4 bits (137), Expect = 3e-08
Identities = 14/38 (36%), Positives = 21/38 (55%), Gaps = 2/38 (5%)
Query: 47 DPCNRPLS--RGFPDRDYDFIVIGGGSSGAVVANRLSE 82
D + LS + YD+I+ GGG +G VA +L+E
Sbjct: 8 DVQSSLLSDPSKVAGKTYDYIIAGGGLTGLTVAAKLTE 45
>3qvp_A Glucose oxidase; oxidoreductase; HET: NAG BMA MAN FAD; 1.20A
{Aspergillus niger} PDB: 1gal_A* 1cf3_A* 3qvr_A*
Length = 583
Score = 523 bits (1350), Expect = e-177
Identities = 116/506 (22%), Positives = 192/506 (37%), Gaps = 53/506 (10%)
Query: 390 VLGGTSVLNGMMYIRGSRADYDNWAKA-GNPGWSYQDVLPYFLKSEDNQQATMM------ 442
LGG++++NG + R +A D+W GN GW++ +V Y L++E +
Sbjct: 99 GLGGSTLVNGGTWTRPHKAQVDSWETVFGNEGWNWDNVAAYSLQAERARAPNAKQIAAGH 158
Query: 443 --DQGFHGVGGYLTVT---QFPYHPPLSHSILQGAMELGMPV-RDLNGVSHTGFMIAQ-T 495
+ HGV G + + P+ +++ + G+P +D G + T
Sbjct: 159 YFNASCHGVNGTVHAGPRDTGDDYSPIVKALMSAVEDRGVPTKKDFGCGDPHGVSMFPNT 218
Query: 496 TTRNGSRLSTSKAFLRPIISRNNLHILLNTTVTRVIVDP--LTKAAIGVEFLT-NGRLER 552
+ R ++ +L P R NL +L V +V++ T A+GVEF T G
Sbjct: 219 LHEDQVRSDAAREWLLPNYQRPNLQVLTGQYVGKVLLSQNGTTPRAVGVEFGTHKGNTHN 278
Query: 553 LQAKNEVIVCAGAVDSPRILLLSGIGPREELRRLNIAPIHDLPGVGKNLHNHVAHFLNFF 612
+ AK+EV++ AG+ SP IL SGIG + L L I + DLP VG NL + +
Sbjct: 279 VYAKHEVLLAAGSAVSPTILEYSGIGMKSILEPLGIDTVVDLP-VGLNLQDQTTATVRSR 337
Query: 613 INDTDTTALN--------------WATAMEYLLFRDGLMSGTGLSEVTGFVHSRLSNPAE 658
I A E L + GF ++
Sbjct: 338 ITSAGAGQGQAAWFATFNETFGDYSEKAHELLNTKLE-QWAEEAVARGGFHNTT---ALL 393
Query: 659 DNPDLQIFFSGYLANCARTGQVGERSDGMNNSTPVPQRTISIFPTVLHPKSRGYLTLKDN 718
+ + + + + S L P +RGY+ + D
Sbjct: 394 IQYENYRDW------------IVNHNVAYSELFLDTAGVASFDVWDLLPFTRGYVHILDK 441
Query: 719 NPQT-PPLIFARYLTHPDDVKTLVDGIKIAIRLTQTAALQKYGFRIDTTPVKGCENLPFG 777
+P +Y + D+ ++A ++ + A+Q Y +T P G
Sbjct: 442 DPYLHHFAYDPQYFLNELDLLGQAAATQLARNISNSGAMQTYFAG-ETIP--GDNLAYDA 498
Query: 778 CDAYWECAIRRNTGAENHQAGSCKMGPASDPSAVVSPELKVHGVDRLRVVDCSIMPAVTS 837
+ W I + H G+C M P + VV +V+GV LRV+D SI P S
Sbjct: 499 DLSAWTEYIPYHFRPNYHGVGTCSMMP-KEMGGVVDNAARVYGVQGLRVIDGSIPPTQMS 557
Query: 838 GNTNAPAIMIAEKASDLIKQQWIGKR 863
+ +A K SD I + + +
Sbjct: 558 SHVMTVFYAMALKISDAILEDYASMQ 583
Score = 125 bits (315), Expect = 6e-30
Identities = 28/92 (30%), Positives = 43/92 (46%), Gaps = 8/92 (8%)
Query: 133 RGFPDRDYDFIVIGGGSSGAVVANRLSEVPNWRVLLIEAGGDEPTG---TQIPSMFLNFL 189
+ R D+I+ GGG +G A RL+E PN VL+IE+G E + + + +
Sbjct: 13 KDVSGRTVDYIIAGGGLTGLTTAARLTENPNISVLVIESGSYESDRGPIIEDLNAYGDIF 72
Query: 190 GSSIDYGYKTEPEDMACLNNEERRCNWPRGKV 221
GSS+D+ Y+T NN + G
Sbjct: 73 GSSVDHAYETVELAT---NN--QTALIRSGNG 99
Score = 93.8 bits (234), Expect = 6e-20
Identities = 19/55 (34%), Positives = 25/55 (45%), Gaps = 1/55 (1%)
Query: 281 CAIRRNTGAENHQAGSCKMGPASDPSAVVSPELKVHGVDRLRVVDCSIMPAVTSG 335
I + H G+C M P + VV +V+GV LRV+D SI P S
Sbjct: 505 EYIPYHFRPNYHGVGTCSMMP-KEMGGVVDNAARVYGVQGLRVIDGSIPPTQMSS 558
Score = 71.9 bits (177), Expect = 4e-13
Identities = 17/62 (27%), Positives = 27/62 (43%), Gaps = 8/62 (12%)
Query: 222 PNWRVLLIEAGGDEPTG---TQIPSMFLNFLGSSIDYGYKTEPEDMACLNNEERRCNWPR 278
PN VL+IE+G E + + + + GSS+D+ Y+T NN +
Sbjct: 42 PNISVLVIESGSYESDRGPIIEDLNAYGDIFGSSVDHAYETVELAT---NN--QTALIRS 96
Query: 279 GK 280
G
Sbjct: 97 GN 98
Score = 55.3 bits (134), Expect = 7e-08
Identities = 11/28 (39%), Positives = 16/28 (57%)
Query: 55 RGFPDRDYDFIVIGGGSSGAVVANRLSE 82
+ R D+I+ GGG +G A RL+E
Sbjct: 13 KDVSGRTVDYIIAGGGLTGLTTAARLTE 40
>3t37_A Probable dehydrogenase; BET alpha beta fold, ADP binding,
oxidoreductase; HET: FAD; 2.19A {Mesorhizobium loti}
Length = 526
Score = 492 bits (1270), Expect = e-166
Identities = 114/473 (24%), Positives = 195/473 (41%), Gaps = 51/473 (10%)
Query: 390 VLGGTSVLNGMMYIRGSRADYDNWAKA-GNPGWSYQDVLPYFLKSEDNQQATMMDQGFHG 448
++GG+S L+ M Y+RG +D+ W A G+ W + ++LP F ED+ G HG
Sbjct: 96 LIGGSSCLHAMGYMRGHPSDFQAWVDASGDRRWGWDELLPVFQAIEDHPLG---GDGIHG 152
Query: 449 VGGYLTVT-QFPYHPPLSHSILQGAMELGMP-VRDLNGVSHTGFMIAQTTTRNGSRLSTS 506
GG L + PL+ + ++ LG+P + N G R+G R++ +
Sbjct: 153 KGGPLPIHLPADEVSPLARAFIEAGASLGLPRLEGHNSGEMIGVTPNSLNIRDGRRVTAA 212
Query: 507 KAFLRPII-SRNNLHILLNTTVTRVIVDPLTKAAIGVEFLTNGRLERLQAKNEVIVCAGA 565
A+L + R NL IL + V R+ ++ +E + + A ++++CAGA
Sbjct: 213 DAWLTKAVRGRKNLTILTGSRVRRLKLE--GNQVRSLEVVGRQGSAEVFAD-QIVLCAGA 269
Query: 566 VDSPRILLLSGIGPREELRRLNIAPIHDLPGVGKNLHNHVAHFLNFFINDTDTTALNWAT 625
++SP +L+ SGIGP + L + + D+P +G+NL +H+
Sbjct: 270 LESPALLMRSGIGPHDVLDAAGVGCLIDMPDIGRNLQDHLL-----------------GA 312
Query: 626 AMEYLLFRDGLMSGTGLSEVTGFVHSRLSNPAEDNPDLQIFFSGYLANCARTGQVGERSD 685
Y + S SE ++ + S A P++ + G S+
Sbjct: 313 GNLYAARKPVPPSRLQHSESMAYMRAD-SFTAAGQPEIVVGC----------GVAPIVSE 361
Query: 686 GMNNSTPVPQRTISIFPTVLHPKSRGYLTLKDNNPQTPPLIFARYLTHPDDVKTLVDGIK 745
P S+ + HP SRG + + +I YL D + ++
Sbjct: 362 SFP--APAAGSAYSLLFGITHPTSRGSVRISGPELGDRLIIDPAYLQTGRDRERFRRALE 419
Query: 746 IAIRLTQTAALQKY-GFRIDTTPVKGCENLPFGCDAYWECAIRRNTGAENHQAGSCKMGP 804
+ + L + + A + I R+ +H G+C+MG
Sbjct: 420 ASRTIGHRDELAGWRERELLPGTPNS--------AAEMDDFIARSVITHHHPCGTCRMGK 471
Query: 805 ASDPSAVVSPELKVHGVDRLRVVDCSIMPAVTSGNTNAPAIMIAEKASDLIKQ 857
DP AVV L++ +D L VVD SIMP +T+G +A + IAE +
Sbjct: 472 --DPDAVVDANLRLKALDNLFVVDASIMPNLTAGPIHAAVLAIAETFARQYHH 522
Score = 107 bits (269), Expect = 2e-24
Identities = 32/84 (38%), Positives = 49/84 (58%), Gaps = 5/84 (5%)
Query: 139 DYDFIVIGGGSSGAVVANRLSEVPNWRVLLIEAGG-DEPTGTQIPSMFLNFLGSSIDYGY 197
+ D +++GGGS+G+++A RLSE P+ RVLLIEAG P+ + G S D+ Y
Sbjct: 17 NCDIVIVGGGSAGSLLAARLSEDPDSRVLLIEAGEEPTDPDIWNPAAWPALQGRSYDWDY 76
Query: 198 KTEPEDMACLNNEERRCNWPRGKV 221
+TE + A R +W RG++
Sbjct: 77 RTEAQ--AGTAG--RAHHWARGRL 96
Score = 89.8 bits (224), Expect = 9e-19
Identities = 24/54 (44%), Positives = 33/54 (61%), Gaps = 2/54 (3%)
Query: 282 AIRRNTGAENHQAGSCKMGPASDPSAVVSPELKVHGVDRLRVVDCSIMPAVTSG 335
I R+ +H G+C+MG DP AVV L++ +D L VVD SIMP +T+G
Sbjct: 452 FIARSVITHHHPCGTCRMGK--DPDAVVDANLRLKALDNLFVVDASIMPNLTAG 503
Score = 59.4 bits (145), Expect = 3e-09
Identities = 21/60 (35%), Positives = 29/60 (48%), Gaps = 5/60 (8%)
Query: 222 PNWRVLLIEAGG-DEPTGTQIPSMFLNFLGSSIDYGYKTEPEDMACLNNEERRCNWPRGK 280
P+ RVLLIEAG P+ + G S D+ Y+TE + A R +W RG+
Sbjct: 40 PDSRVLLIEAGEEPTDPDIWNPAAWPALQGRSYDWDYRTEAQ--AGTAG--RAHHWARGR 95
Score = 51.3 bits (124), Expect = 1e-06
Identities = 11/22 (50%), Positives = 19/22 (86%)
Query: 61 DYDFIVIGGGSSGAVVANRLSE 82
+ D +++GGGS+G+++A RLSE
Sbjct: 17 NCDIVIVGGGSAGSLLAARLSE 38
>2jbv_A Choline oxidase; alcohol oxidation, flavoenyzme oxidase, covalently
linked FAD, C4A-adduct, flavoprotein, oxidoreductase;
HET: FAO; 1.86A {Arthrobacter globiformis} PDB: 3nne_A*
3ljp_A*
Length = 546
Score = 493 bits (1271), Expect = e-166
Identities = 131/484 (27%), Positives = 218/484 (45%), Gaps = 49/484 (10%)
Query: 390 VLGGTSVLNGMMYIRGSRADYDNW-AKAGNPGWSYQDVLPYFLKSEDNQQATMMDQGFHG 448
V+GG S N + R D D W AK G GW+ + P + + E N+ A D HG
Sbjct: 92 VMGGCSSHNSCIAFWAPREDLDEWEAKYGATGWNAEAAWPLYKRLETNEDAGP-DAPHHG 150
Query: 449 VGGYLTVTQFPYHPPLSHSILQGAMELGMPV-RDLNGVSHT-GFMIAQTTTR-NGSRLST 505
G + + P P ++L + G+P + G + G Q R +G+R S+
Sbjct: 151 DSGPVHLMNVPPKDPTGVALLDACEQAGIPRAKFNTGTTVVNGANFFQINRRADGTRSSS 210
Query: 506 SKAFLRPIISRNNLHILLNTTVTRVIVDPLTKAAIGVEFLTN--GRLERLQAKNEVIVCA 563
S +++ PI+ + N +L +++ D + GV+ + + G RL A+NEV++
Sbjct: 211 SVSYIHPIVEQENFTLLTGLRARQLVFDA-DRRCTGVDIVDSAFGHTHRLTARNEVVLST 269
Query: 564 GAVDSPRILLLSGIGPREELRRLNIAPIHDLPGVGKNLHNHVAHFLNFFINDTDTT-ALN 622
GA+D+P++L+LSGIGP L I + D PGVG++L +H + F +
Sbjct: 270 GAIDTPKLLMLSGIGPAAHLAEHGIEVLVDSPGVGEHLQDHPEGVVQFEAKQPMVAESTQ 329
Query: 623 WATAMEYLLFRDGLMSGTGLSEVTGFVHSRLSNPAEDNPDLQIFFSGYLANCARTGQVGE 682
W E+ F + D PDL + + G V
Sbjct: 330 WW-------------------EIGIFTPTE---DGLDRPDLMMHY----------GSVPF 357
Query: 683 RSDGMNNSTPVPQRTISIFPTVLHPKSRGYLTLKDNNPQTPPLIFARYLTHPD--DVKTL 740
+ + + P + S+ P V H +SRG + L+ + + P++ RY T P+ D++ +
Sbjct: 358 DMNTLRHGYPTTENGFSLTPNVTHARSRGTVRLRSRDFRDKPMVDPRYFTDPEGHDMRVM 417
Query: 741 VDGIKIAIRLTQTAALQKYGFRIDTTPVKGCENLPFGCDAYWECAIRRNTGAENHQAGSC 800
V GI+ A + A+ ++ R + +P + D + IR+ H G+
Sbjct: 418 VAGIRKAREIAAQPAMAEWTGR-ELSPGVEAQT-----DEELQDYIRKTHNTVYHPVGTV 471
Query: 801 KMGPASDPSAVVSPELKVHGVDRLRVVDCSIMPAVTSGNTNAPAIMIAEKASDLIKQQWI 860
+MG D + + PEL+V GV LRV D S+MP + N N +MI E+ +DLI+
Sbjct: 472 RMGAVEDEMSPLDPELRVKGVTGLRVADASVMPEHVTVNPNITVMMIGERCADLIRSARA 531
Query: 861 GKRA 864
G+
Sbjct: 532 GETT 535
Score = 104 bits (262), Expect = 2e-23
Identities = 34/87 (39%), Positives = 46/87 (52%), Gaps = 7/87 (8%)
Query: 137 DRDYDFIVIGGGSSGAVVANRLSEVPNWRVLLIEAGG-DEPTGTQIPS-MFLNFLGSSID 194
DR++D+IV+GGGS+GA VA RLSE P V L+EAG D + ++ L S D
Sbjct: 11 DREFDYIVVGGGSAGAAVAARLSEDPAVSVALVEAGPDDRGVPEVLQLDRWMELLESGYD 70
Query: 195 YGYKTEPEDMACLNNEERRCNWPRGKV 221
+ Y EP++ N R KV
Sbjct: 71 WDYPIEPQEN--GN---SFMRHARAKV 92
Score = 94.1 bits (235), Expect = 4e-20
Identities = 20/54 (37%), Positives = 28/54 (51%)
Query: 282 AIRRNTGAENHQAGSCKMGPASDPSAVVSPELKVHGVDRLRVVDCSIMPAVTSG 335
IR+ H G+ +MG D + + PEL+V GV LRV D S+MP +
Sbjct: 456 YIRKTHNTVYHPVGTVRMGAVEDEMSPLDPELRVKGVTGLRVADASVMPEHVTV 509
Score = 55.2 bits (134), Expect = 5e-08
Identities = 16/61 (26%), Positives = 23/61 (37%), Gaps = 7/61 (11%)
Query: 222 PNWRVLLIEAGG-DEPTGTQIPS-MFLNFLGSSIDYGYKTEPEDMACLNNEERRCNWPRG 279
P V L+EAG D + ++ L S D+ Y EP++ N R
Sbjct: 36 PAVSVALVEAGPDDRGVPEVLQLDRWMELLESGYDWDYPIEPQEN--GN---SFMRHARA 90
Query: 280 K 280
K
Sbjct: 91 K 91
Score = 52.5 bits (127), Expect = 4e-07
Identities = 17/24 (70%), Positives = 22/24 (91%)
Query: 59 DRDYDFIVIGGGSSGAVVANRLSE 82
DR++D+IV+GGGS+GA VA RLSE
Sbjct: 11 DREFDYIVVGGGSAGAAVAARLSE 34
>1ju2_A HydroxynitrIle lyase; flavin, GMC oxidoreductase, almond,
cyanogenesis; HET: NAG NDG FUC BMA MAN FAD; 1.47A
{Prunus dulcis} SCOP: c.3.1.2 d.16.1.1 PDB: 3gdp_A*
3gdn_A*
Length = 536
Score = 466 bits (1201), Expect = e-156
Identities = 97/486 (19%), Positives = 164/486 (33%), Gaps = 74/486 (15%)
Query: 390 VLGGTSVLNGMMYIRGSRADYDNWAKAGNPGWSYQDVLPYFLKSEDNQQATMMDQGFHGV 449
VLGGTS++N +Y R + + Y W V + ED +
Sbjct: 102 VLGGTSIINAGVYARANTSIYSAS----GVDWDMDLVNQTYEWVEDTIV-------YKPN 150
Query: 450 GGYLTVTQFPYHPPLSHSILQGAMELGMPVRDLNGVSHTGFMIAQTTTRNGSRLSTSKAF 509
+ + L+ + + G I +T N +
Sbjct: 151 SQ-------SWQSVTKTAFLEAGVHPN---HGFSLDHEEGTRITGSTFDNKGTRHAADEL 200
Query: 510 LRPIISRNNLHILLNTTVTRVIVDPLT-KAAIGVEFLTNGRLER---LQAKNEVIVCAGA 565
L + NNL + ++ +V ++I A GV + + +++K EVIV AG
Sbjct: 201 LNKG-NSNNLRVGVHASVEKIIFSNAPGLTATGVIYRDSNGTPHQAFVRSKGEVIVSAGT 259
Query: 566 VDSPRILLLSGIGPREELRRLNIAPIHDLPGVGKNLHNHVAHFLNFFINDTDTTALNWAT 625
+ +P++LLLSG+GP L LNI + P VG+ LH++ +F+N + +
Sbjct: 260 IGTPQLLLLSGVGPESYLSSLNIPVVLSHPYVGQFLHDNPRNFINILPPNPIEPTIVTVL 319
Query: 626 AMEYLLFRDGLMSGTGLSEVTGFVHSRLSNPAEDNPDLQIFFSGYLANCARTGQVGERSD 685
+ ++ + F
Sbjct: 320 GISNDFYQCS-------------------FSSLPFTTPPFGF-----------FPSSSYP 349
Query: 686 GMNNSTPVPQRTISIFPTVLHPKSRGYLTLKD-NNPQTPPLIFARYLTHPDDVKTLVDGI 744
N++ V P S G LTLK +N + P + Y ++ D+ V G+
Sbjct: 350 LPNSTFA------HFASKVAGPLSYGSLTLKSSSNVRVSPNVKFNYYSNLTDLSHCVSGM 403
Query: 745 KIAIRLTQTAALQKYGFRIDTTPVKGCENLPFGC-----DAYWECAIRRNTGAENHQAGS 799
K L T AL+ Y DA +E R + + H G
Sbjct: 404 KKIGELLSTDALKPYKVEDLPGVEGFNILGIPLPKDQTDDAAFETFCRESVASYWHYHGG 463
Query: 800 CKMGPASDPSAVVSPELKVHGVDRLRVVDCSIMPAVTSGNTNAPAIMIAEKASDLIKQQW 859
C +G V+ + +V G++ LRVVD S P + + +M+ I Q+
Sbjct: 464 CLVG------KVLDGDFRVTGINALRVVDGSTFPYTPASHPQGFYLMLGRYVGIKILQER 517
Query: 860 IGKRAW 865
Sbjct: 518 SASDLK 523
Score = 105 bits (264), Expect = 1e-23
Identities = 21/85 (24%), Positives = 39/85 (45%), Gaps = 6/85 (7%)
Query: 137 DRDYDFIVIGGGSSGAVVANRLSEVPNWRVLLIEAGGDEPTGTQIPSMFLNFLGSSIDYG 196
+ YD++++GGG+SG +A LSE ++VL++E G + + +
Sbjct: 24 EGSYDYVIVGGGTSGCPLAATLSE--KYKVLVLERGSLPTAYPNVLTADGFVYNLQQEDD 81
Query: 197 YKTEPEDMACLNNEERRCNWPRGKV 221
KT E ++ + RG+V
Sbjct: 82 GKTPVE--RFVSE--DGIDNVRGRV 102
Score = 83.0 bits (206), Expect = 1e-16
Identities = 15/55 (27%), Positives = 24/55 (43%), Gaps = 6/55 (10%)
Query: 281 CAIRRNTGAENHQAGSCKMGPASDPSAVVSPELKVHGVDRLRVVDCSIMPAVTSG 335
R + + H G C +G V+ + +V G++ LRVVD S P +
Sbjct: 448 TFCRESVASYWHYHGGCLVG------KVLDGDFRVTGINALRVVDGSTFPYTPAS 496
Score = 59.1 bits (144), Expect = 4e-09
Identities = 9/58 (15%), Positives = 20/58 (34%), Gaps = 4/58 (6%)
Query: 223 NWRVLLIEAGGDEPTGTQIPSMFLNFLGSSIDYGYKTEPEDMACLNNEERRCNWPRGK 280
++VL++E G + + + KT E ++ + RG+
Sbjct: 48 KYKVLVLERGSLPTAYPNVLTADGFVYNLQQEDDGKTPVE--RFVSE--DGIDNVRGR 101
Score = 52.2 bits (126), Expect = 5e-07
Identities = 11/24 (45%), Positives = 18/24 (75%)
Query: 59 DRDYDFIVIGGGSSGAVVANRLSE 82
+ YD++++GGG+SG +A LSE
Sbjct: 24 EGSYDYVIVGGGTSGCPLAATLSE 47
>1kdg_A CDH, cellobiose dehydrogenase; GMC oxidoreductase, PHBH fold,
alpha/beta structure, rossman 6-hydroxylated FAD,
oxidoreductase; HET: NAG MAN 6FA EMT; 1.50A
{Phanerochaete chrysosporium} SCOP: c.3.1.2 d.16.1.1
PDB: 1naa_A*
Length = 546
Score = 430 bits (1109), Expect = e-142
Identities = 96/492 (19%), Positives = 166/492 (33%), Gaps = 68/492 (13%)
Query: 390 VLGGTSVLNGMMYIRGSRADYDNWAKAGNPGW--SYQDVLPYFLKSEDNQQATMMDQGFH 447
++GG + +NG +Y + D+ + GW S+ + PY K +T
Sbjct: 92 LVGGGTSVNGALYWYPNDGDFSSSV-----GWPSSWTNHAPYTSKLSSRLPST----DHP 142
Query: 448 GVGGYLTVTQFPYHPPLSHSILQGAMELGMPVRDLNGVSHTGFMIAQTTTRNGSRLSTSK 507
G + Q + +L+G + D F + NG R
Sbjct: 143 STDGQRYLEQ---SFNVVSQLLKGQGYNQATINDNPNYKDHVFGYSAFDFLNGKRAGPVA 199
Query: 508 AFLRPIISRNNLHILLNTTVTRVIVDPLTKAAIGVEF----LTNGRLERLQAKNEVIVCA 563
+L+ ++R N N V+ V+ + +GV+ L + K VI+ A
Sbjct: 200 TYLQTALARPNFTFKTNVMVSNVVRN--GSQILGVQTNDPTLGPNGFIPVTPKGRVILSA 257
Query: 564 GAVDSPRILLLSGIGPREELRRLNIAPIHDLP----------GVGKNLHNHVAHFLNFFI 613
GA + RIL SGIGP + ++ + P VG N ++ + L F
Sbjct: 258 GAFGTSRILFQSGIGPTDMIQTVQSNPTAAAALPPQNQWINLPVGMNAQDNPSINLVFTH 317
Query: 614 NDTDT--------TALNWATAMEYLLFRDGLMSGTGLSEVTGFVHSRLSNPAEDNPDLQI 665
D + A A +YL + G+ +G ++ + S Q
Sbjct: 318 PSIDAYENWADVWSNPRPADAAQYLANQSGVFAG-ASPKLNFWR--AYSGSDGFTRYAQG 374
Query: 666 FFSGYLANCARTGQVGERSDGMNNSTPVPQRTISIFPTVLHPKSRGYLTLKDNNPQTPPL 725
A + S + + +SRG + + +
Sbjct: 375 TVR-PGAASVNSSLPYNASQIFTITVYLSTG----------IQSRGRIGIDAALR--GTV 421
Query: 726 IFARYLTHPDDVKTLVDGIKIAIR-LTQTAALQKYGFRIDTTPVKGCENLPFGCDAYWEC 784
+ +L +P D L+ + + + L + T +
Sbjct: 422 LTPPWLVNPVDKTVLLQALHDVVSNIGSIPGLTMITPDVTQT------------LEEYVD 469
Query: 785 AIRRNTGAENHQAGSCKMGPASDPSAVVSPELKVHGVDRLRVVDCSIMPAVTSGNTNAPA 844
A T NH S +G S SAVV +KV G + L +VD I+P + +GN
Sbjct: 470 AYDPATMNSNHWVSSTTIGS-SPQSAVVDSNVKVFGTNNLFIVDAGIIPHLPTGNPQGTL 528
Query: 845 IMIAEKASDLIK 856
+ AE+A+ I
Sbjct: 529 MSAAEQAAAKIL 540
Score = 92.6 bits (231), Expect = 1e-19
Identities = 20/59 (33%), Positives = 27/59 (45%), Gaps = 3/59 (5%)
Query: 282 AIRRNTGAENHQAGSCKMGPASDPSAVVSPELKVHGVDRLRVVDCSIMPAVTSG--SAP 338
A T NH S +G S SAVV +KV G + L +VD I+P + +G
Sbjct: 470 AYDPATMNSNHWVSSTTIGS-SPQSAVVDSNVKVFGTNNLFIVDAGIIPHLPTGNPQGT 527
Score = 88.8 bits (221), Expect = 2e-18
Identities = 22/90 (24%), Positives = 36/90 (40%), Gaps = 13/90 (14%)
Query: 140 YDFIVIGGGSSGAVVANRLSEVPNWRVLLIEAGG---DEPTGTQIPSMFLNFLGSSIDY- 195
YD+I++G G G + A+RLSE +VLL+E GG + GT + + + D
Sbjct: 8 YDYIIVGAGPGGIIAADRLSEAGK-KVLLLERGGPSTKQTGGTYVAPWATSSGLTKFDIP 66
Query: 196 ----GYKTEPEDMACLNNEERRCNWPRGKV 221
T+ + G +
Sbjct: 67 GLFESLFTDSN--PFWWC--KDITVFAGCL 92
Score = 49.5 bits (119), Expect = 4e-06
Identities = 11/21 (52%), Positives = 16/21 (76%)
Query: 62 YDFIVIGGGSSGAVVANRLSE 82
YD+I++G G G + A+RLSE
Sbjct: 8 YDYIIVGAGPGGIIAADRLSE 28
Score = 44.1 bits (105), Expect = 2e-04
Identities = 11/64 (17%), Positives = 19/64 (29%), Gaps = 12/64 (18%)
Query: 225 RVLLIEAGG---DEPTGTQIPSMFLNFLGSSIDY-----GYKTEPEDMACLNNEERRCNW 276
+VLL+E GG + GT + + + D T+ +
Sbjct: 32 KVLLLERGGPSTKQTGGTYVAPWATSSGLTKFDIPGLFESLFTDSN--PFWWC--KDITV 87
Query: 277 PRGK 280
G
Sbjct: 88 FAGC 91
>1n4w_A CHOD, cholesterol oxidase; flavoenzyme, steroid metabolism,
oxidoreductase, atomic RESO; HET: FAD; 0.92A
{Streptomyces SP} SCOP: c.3.1.2 d.16.1.1 PDB: 1b4v_A*
1n1p_A* 1n4u_A* 1n4v_A* 1mxt_A* 2gew_A* 1b8s_A* 3gyi_A*
1cc2_A* 3gyj_A* 1ijh_A* 1cbo_A* 3b3r_A* 3b6d_A* 3cnj_A*
Length = 504
Score = 119 bits (300), Expect = 1e-28
Identities = 72/487 (14%), Positives = 127/487 (26%), Gaps = 111/487 (22%)
Query: 390 VLGGTSVLNGMMYIRGSRADYDNWAKAGNPGWSYQDVLPYFLKSEDNQQATMMDQGFHGV 449
+GG S++NG M + R+ ++ S + YF ++ V
Sbjct: 106 GVGGGSLVNGGMAVEPKRSYFEEILPRV---DSSEMYDRYFPRANS----------MLRV 152
Query: 450 GGYLTVT-QFPYHPPLSHSILQGAMELGMPVRDLNGVSHTGFMIAQT------------- 495
T + + + A + G+ + V G+M +
Sbjct: 153 NHIDTKWFEDTEWYKFARVSREQAGKAGLGTVFVPNVYDFGYMQREAAGEVPKSALATEV 212
Query: 496 -TTRNGSRLSTSKAFLRPIISRNNLHILLNTTVTRVIVDPLTKAAIGVEFLTNGRL---E 551
N + S K +L + + I V + A+ VE
Sbjct: 213 IYGNNHGKQSLDKTYLAAALGTGKVTIQTLHQVKTIRQTKDGGYALTVEQKDTDGKLLAT 272
Query: 552 RLQAKNEVIVCAGAVDSPRILLLSGIGPREELRRLNIAPIHDLPGVGKNLHNHVAHFLNF 611
+ + + + AG++ S +L+ + L LN VG +
Sbjct: 273 KEISCRYLFLGAGSLGSTELLVRARD--TGTLPNLN-------SEVGAGWGPN------- 316
Query: 612 FINDTDTTALNWATAMEYLLFRDGLMSGTGLSEVTGFVHSRLSNPAEDNPDLQIFFSGYL 671
+ R M + + + A DN D +F
Sbjct: 317 ---------------GNIMTARANHMWNPTGAHQSSIPALGI--DAWDNSDSSVFAEIA- 358
Query: 672 ANCARTGQVGERSDGMNNSTPVPQRTISIFPTVLHPKSRGYLTLKDNNPQTPPLIFARYL 731
+ T PQR T ++ + L Q P +
Sbjct: 359 ---PMPAGLETWVSLYLAITKNPQRG-----TFVYDAATDRAKLNWTRDQNAPAV----- 405
Query: 732 THPDDVKTLVDGIKIAIRLTQTAALQKYGFRIDTTPVKGCENLPFGCDAYWECAIRRNTG 791
+ K L D I A + D +
Sbjct: 406 ---NAAKALFDRINKANGTI------------------------YRYDLFGTQLKAFADD 438
Query: 792 AENHQAGSCKMGPASDPSAVVSPELKVHGVDRLRVVDCSIMPAVTSGNTNAPAIMIAEKA 851
H G C +G +V G L V D S++P N +AE+
Sbjct: 439 FCYHPLGGCVLG------KATDDYGRVAGYKNLYVTDGSLIPGSVGVNPFVTITALAERN 492
Query: 852 SDLIKQQ 858
+ I +Q
Sbjct: 493 VERIIKQ 499
Score = 55.4 bits (133), Expect = 5e-08
Identities = 15/54 (27%), Positives = 21/54 (38%), Gaps = 1/54 (1%)
Query: 136 PDRDYDFIVIGGGSSGAVVANRLSEVPNWRVLLIEAGGDEPTGTQIPSMFLNFL 189
+VIG G AV A RL E + L++E G ++F L
Sbjct: 2 NGGYVPAVVIGTGYGAAVSALRLGE-AGVQTLMLEMGQLWNQPGPDGNIFCGML 54
Score = 54.7 bits (131), Expect = 8e-08
Identities = 19/67 (28%), Positives = 26/67 (38%), Gaps = 13/67 (19%)
Query: 292 HQAGSCKMGPASDPSAVVSPELKVHGVDRLRVVDCSIMPAVTSGSAPLGGIQAL------ 345
H G C +G +V G L V D S++P + P I AL
Sbjct: 442 HPLGGCVLG------KATDDYGRVAGYKNLYVTDGSLIPGSVGVN-PFVTITALAERNVE 494
Query: 346 RITRQDL 352
RI +QD+
Sbjct: 495 RIIKQDV 501
Score = 43.1 bits (101), Expect = 3e-04
Identities = 10/25 (40%), Positives = 11/25 (44%)
Query: 58 PDRDYDFIVIGGGSSGAVVANRLSE 82
+VIG G AV A RL E
Sbjct: 2 NGGYVPAVVIGTGYGAAVSALRLGE 26
>3pl8_A Pyranose 2-oxidase; substrate complex, H167A mutant, homotetramer,
GMC oxidoredu PHBH fold, rossmann domain,
oxidoreductase; HET: FAD MES G3F; 1.35A {Trametes
ochracea} PDB: 2igo_A* 3lsm_A* 2ign_A* 3k4c_A* 1tt0_A*
2igk_A* 3k4b_A* 3lsk_A* 3bg6_A* 3lsh_A* 3lsi_A* 2igm_A*
3k4j_A* 3k4m_A* 3bg7_A* 3k4k_A* 3k4l_A* 3bly_A* 1tzl_A*
3fdy_A* ...
Length = 623
Score = 120 bits (302), Expect = 2e-28
Identities = 68/501 (13%), Positives = 131/501 (26%), Gaps = 78/501 (15%)
Query: 390 VLGGTSVLNGMMYIRGSRADYDNWAKAGNPGWSYQDVLPYFLKSEDNQQATMMDQGFHGV 449
V+GG S R R K + + K+E
Sbjct: 160 VVGGMSTAWTCATPRFDREQRPLLVKDDADA-DDAEWDRLYTKAES-------------- 204
Query: 450 GGYLTVTQFPYHPPLSHSILQGAMELGMPV-RDLNGVSHTGFMIAQTTTRNGSRLSTSKA 508
Y + + H+++ + RD + A + S++
Sbjct: 205 --YFQTGTDQFKESIRHNLVLNKLTEEYKGQRDF----QQIPLAATRRSPTFVEWSSANT 258
Query: 509 FL------RPIISRNNLHILLNTTVTRVIVDPLTKAAIGVEF--LTNGRLERLQAKNEVI 560
++ RV+ + L + L +G ++A +
Sbjct: 259 VFDLQNRPNTDAPEERFNLFPAVACERVVRNALNSEIESLHIHDLISGDRFEIKAD-VYV 317
Query: 561 VCAGAVDSPRILLLSGIGPREELRRLNIAPIHDLPGVGKNLHNHVAHFLNFFINDT--DT 618
+ AGAV + ++L+ SG G R P LP +G + F ++ D+
Sbjct: 318 LTAGAVHNTQLLVNSGFGQLG--RPNPANPPELLPSLGSYITEQSLVFCQTVMSTELIDS 375
Query: 619 TALNWATAMEYLL------FRDGLMSGTGLSEVTGFV------HSRLSNPAEDNPDLQIF 666
+ + G + V H P
Sbjct: 376 VKSDMTIRGTPGELTYSVTYTPGASTNKHPDWWNEKVKNHMMQHQEDPLPIPFEDPEPQV 435
Query: 667 FSGYLANCARTGQVGERSDGMNNSTPVPQRTISIFPTVL---HPKSRGYLTLKDN--NPQ 721
+ + + Q+ + + + PK L D +
Sbjct: 436 TTLFQPSHPWHTQIHRDAFSYGAVQQSIDSRLIVDWRFFGRTEPKEENKLWFSDKITDAY 495
Query: 722 TPPLIFARYLTHPDDVKTLVDGIKIAIRLTQTAALQKYGFRIDTTPVKGCENLPFGCDAY 781
P + + + + + GF + P
Sbjct: 496 NMPQPTFDFRFPAGRTSKEAEDMMTDMCVMSAKIG---GFLPGSLPQF------------ 540
Query: 782 WECAIRRNTGAENHQAGSCKMGPASDP---SAVVSPELKVHGVDRLRVVDCSIMPAVTSG 838
G H G+ +MG D + V+ + +V G L + C +P
Sbjct: 541 ------MEPGLVLHLGGTHRMG--FDEKEDNCCVNTDSRVFGFKNLFLGGCGNIPTAYGA 592
Query: 839 NTNAPAIMIAEKASDLIKQQW 859
N A+ +A K+ + IKQ +
Sbjct: 593 NPTLTAMSLAIKSCEYIKQNF 613
Score = 51.0 bits (121), Expect = 1e-06
Identities = 16/65 (24%), Positives = 26/65 (40%), Gaps = 8/65 (12%)
Query: 285 RNTGAENHQAGSCKMGPASDP---SAVVSPELKVHGVDRLRVVDCSIMPAVTSGSA-PLG 340
G H G+ +MG D + V+ + +V G L + C +P T+ A P
Sbjct: 541 MEPGLVLHLGGTHRMG--FDEKEDNCCVNTDSRVFGFKNLFLGGCGNIP--TAYGANPTL 596
Query: 341 GIQAL 345
+L
Sbjct: 597 TAMSL 601
Score = 48.3 bits (114), Expect = 1e-05
Identities = 17/104 (16%), Positives = 34/104 (32%), Gaps = 11/104 (10%)
Query: 136 PDRDYDFIVIGGGSSGAVVANRLSEVPNWRVLLIEAGGDEPTGTQIPSMFLNFLGSSIDY 195
D YD +++G G G A L ++V + + G + +G +I + N
Sbjct: 43 MDIKYDVVIVGSGPIGCTYARELVG-AGYKVAMFDIGEID-SGLKIGAHKKN-------- 92
Query: 196 GYKTEPEDMACLNNEERRCNWPRGKVPNWRVLLIEAGGDEPTGT 239
+++ N + N V+ + T
Sbjct: 93 -TVEYQKNIDKFVNVIQGQLMSVSVPVNTLVVDTLSPTSWQAST 135
Score = 37.1 bits (85), Expect = 0.028
Identities = 8/25 (32%), Positives = 11/25 (44%)
Query: 58 PDRDYDFIVIGGGSSGAVVANRLSE 82
D YD +++G G G A L
Sbjct: 43 MDIKYDVVIVGSGPIGCTYARELVG 67
>1coy_A Cholesterol oxidase; oxidoreductase(oxygen receptor); HET: AND FAD;
1.80A {Brevibacterium sterolicum} SCOP: c.3.1.2 d.16.1.1
PDB: 3cox_A*
Length = 507
Score = 64.4 bits (156), Expect = 8e-11
Identities = 39/246 (15%), Positives = 81/246 (32%), Gaps = 38/246 (15%)
Query: 391 LGGTSVLNGMMYIRGSRADYDNWAKAGNPGWSYQDVLPYFLKSEDNQQATMMDQGFHGVG 450
+GG S++NG M + R ++ + S + YF ++ +DQ +
Sbjct: 112 VGGGSLVNGGMAVTPKRNYFEEILPSV---DSNEMYNKYFPRANTGLGVNNIDQAWF--- 165
Query: 451 GYLTVTQFPYHPPLSHSILQGAMELGMPVRDLNGVSHTGFMIAQ--------------TT 496
+ + + + A G + V +M +
Sbjct: 166 ------ESTEWYKFARTGRKTAQRSGFTTAFVPNVYDFEYMKKEAAGQVTKSGLGGEVIY 219
Query: 497 TRNGSRLSTSKAFLRPIISRNNLHILLNTTVTRVIVDPLTKAAIGVEFL-TNGRL--ERL 553
N + S K +L + L I VT+V + ++ +E + G + ++
Sbjct: 220 GNNAGKKSLDKTYLAQAAATGKLTITTLHRVTKVAPATGSGYSVTMEQIDEQGNVVATKV 279
Query: 554 QAKNEVIVCAGAVDSPRILLLSGIGPREELRRLNIAPIHDLPGVGKNLHNHVAHFLNFFI 613
+ V AG+V + ++L+ L L+ VG+ N+ +
Sbjct: 280 VTADRVFFAAGSVGTSKLLVSMKAQGH--LPNLS-------SQVGEGWGNNGNIMVGRAN 330
Query: 614 NDTDTT 619
+ D T
Sbjct: 331 HMWDAT 336
Score = 54.8 bits (131), Expect = 9e-08
Identities = 23/124 (18%), Positives = 36/124 (29%), Gaps = 1/124 (0%)
Query: 130 PLSRGFPDRDYDFIVIGGGSSGAVVANRLSEVPNWRVLLIEAGGDEPTGTQIPSMFLNFL 189
P +VIG G GAV A RL++ ++E G T +F L
Sbjct: 2 PSRTLADGDRVPALVIGSGYGGAVAALRLTQ-AGIPTQIVEMGRSWDTPGSDGKIFCGML 60
Query: 190 GSSIDYGYKTEPEDMACLNNEERRCNWPRGKVPNWRVLLIEAGGDEPTGTQIPSMFLNFL 249
+ + D N N + +G G + L
Sbjct: 61 NPDKRSMWLADKTDQPVSNFMGFGINKSIDRYVGVLDSERFSGIKVYQGRGVGGGSLVNG 120
Query: 250 GSSI 253
G ++
Sbjct: 121 GMAV 124
Score = 52.5 bits (125), Expect = 4e-07
Identities = 13/64 (20%), Positives = 20/64 (31%), Gaps = 6/64 (9%)
Query: 795 HQAGSCKMGPASDPSAVVSPELKVHGVDRLRVVDCSIMPAVTSGNTNAPAIMIAEKASDL 854
H G + ++ L VVD S++P N +AE+ D
Sbjct: 447 HPLGGVLLN------KATDNFGRLPEYPGLYVVDGSLVPGNVGVNPFVTITALAERNMDK 500
Query: 855 IKQQ 858
I
Sbjct: 501 IISS 504
Score = 45.5 bits (107), Expect = 7e-05
Identities = 15/67 (22%), Positives = 22/67 (32%), Gaps = 13/67 (19%)
Query: 292 HQAGSCKMGPASDPSAVVSPELKVHGVDRLRVVDCSIMPAVTSGSAPLGGIQAL------ 345
H G + ++ L VVD S++P G P I AL
Sbjct: 447 HPLGGVLLN------KATDNFGRLPEYPGLYVVDGSLVPG-NVGVNPFVTITALAERNMD 499
Query: 346 RITRQDL 352
+I D+
Sbjct: 500 KIISSDI 506
Score = 41.3 bits (96), Expect = 0.001
Identities = 11/31 (35%), Positives = 14/31 (45%)
Query: 52 PLSRGFPDRDYDFIVIGGGSSGAVVANRLSE 82
P +VIG G GAV A RL++
Sbjct: 2 PSRTLADGDRVPALVIGSGYGGAVAALRLTQ 32
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 64.3 bits (156), Expect = 2e-10
Identities = 56/329 (17%), Positives = 99/329 (30%), Gaps = 127/329 (38%)
Query: 288 GAENHQAGSCKMGPASDPSAVV-----------SPELKVHGVDRLRVVDCSIMPAVTSGS 336
G ++A S P +++ SP L + + + +V
Sbjct: 307 GVRCYEA----YPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQV------------- 349
Query: 337 APLGGIQALRITRQDLVRWDQHLILALSCHRNS-KSMVWTGSVLWTAVSCLLSPV-LGGT 394
+ T L + + ++L N K++V +G P L G
Sbjct: 350 -----QDYVNKTNSHLPA-GKQVEISL---VNGAKNLVVSG-----------PPQSLYG- 388
Query: 395 SVLNGMMYIRGSRADYDNWAKAGNPGWSYQDVLPYFLKSEDNQQATMMDQGFHGVGGYLT 454
LN + +R ++A P Q +P+ SE + +L
Sbjct: 389 --LN--LTLRKAKA----------PSGLDQSRIPF---SE---------RKLKFSNRFLP 422
Query: 455 VTQFPYHPPL----SHSILQGAM---------ELGMPVRDLNGVSHTGFMIAQTTTRNGS 501
V P+H L S I + + ++ +PV D T +GS
Sbjct: 423 VAS-PFHSHLLVPASDLINKDLVKNNVSFNAKDIQIPVYD---------------TFDGS 466
Query: 502 RLSTSKAFLRPI----ISRNNLH--ILLNTTVTRVIV-DPLTKAAIGVEFLTNGRLERLQ 554
L + I R + T ++ P + +GV LT+ +
Sbjct: 467 DLRVLSGSISERIVDCIIRLPVKWETTTQFKATHILDFGPGGASGLGV--LTHRNKDGTG 524
Query: 555 AKNEVIVCAGAVDSPRILLLSGIGPREEL 583
VIV AG +D P ++
Sbjct: 525 V--RVIV-AGTLDI---------NPDDDY 541
Score = 49.7 bits (118), Expect = 5e-06
Identities = 92/598 (15%), Positives = 163/598 (27%), Gaps = 261/598 (43%)
Query: 231 AGGDEPTGTQIP--SMFLNFLGSSIDYGYKTEPEDM--ACLNNEERRCNWPRGKCAIRRN 286
A DEPT T FL ++ S ++ + + + CL E + N
Sbjct: 49 AADDEPT-TPAELVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCY--------LEGN 99
Query: 287 TGAENHQAGSCKMGPASDPSAVVSPELKVHGVDR--LRVVDCSIMP-----------AVT 333
+ H A + +K + + + + P AV
Sbjct: 100 ---DIHALA------AKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVG 150
Query: 334 SGSAPL----GGIQA--------LRIT-------RQDLVRW-DQHLILALSCHRNSKS-- 371
G+A L GG Q LR DL+++ + L + +++
Sbjct: 151 EGNAQLVAIFGG-QGNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVF 209
Query: 372 ------MVW------TGSVLWTA---VSCLLSPVLGGTSVLNGMMYIRGSRADYDNWAKA 416
+ W T + +SC P++G + + Y AK
Sbjct: 210 TQGLNILEWLENPSNTPDKDYLLSIPISC---PLIGVIQLAH-----------YVVTAKL 255
Query: 417 GNPGWSYQDVLPYFL------------------KSEDN---QQATMMDQGFH-GVGGYLT 454
G++ ++ Y S ++ + F GV Y
Sbjct: 256 L--GFTPGELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEA 313
Query: 455 VTQFPYHPPLSHSILQGAMEL--GMP-----VRDLNGVSHTGFMIAQTTTRNGSRLSTSK 507
+P + L SIL+ ++E G+P + +L ++
Sbjct: 314 ---YP-NTSLPPSILEDSLENNEGVPSPMLSISNL-----------------------TQ 346
Query: 508 AFLRPIISRNNLHILLNTTVTRVIVDPLTKA-AIGVEFLTNGRLERLQAKNEVIVCAGAV 566
++ +++ N H+ P K I L NG ++V
Sbjct: 347 EQVQDYVNKTNSHL------------PAGKQVEIS---LVNGA-------KNLVVS---- 380
Query: 567 DSPRILLLSGIGPREELRRLNI---------------------------------APIH- 592
GP + L LN+ +P H
Sbjct: 381 -----------GPPQSLYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFLPVASPFHS 429
Query: 593 ------------DLPGV-----GKNLHNHVAHF------------LNFFINDTDTT-ALN 622
DL K++ V ++ I D +
Sbjct: 430 HLLVPASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVLSGSISERIVDCIIRLPVK 489
Query: 623 WATAMEY-----LLFRDGLMSGTG-----LSEVTGFVHSRLSNPAEDNPDLQIFFSGY 670
W T ++ L F G SG G + TG V ++ + NPD G+
Sbjct: 490 WETTTQFKATHILDFGPGGASGLGVLTHRNKDGTG-VRVIVAGTLDINPDDDY---GF 543
Score = 47.0 bits (111), Expect = 3e-05
Identities = 87/553 (15%), Positives = 152/553 (27%), Gaps = 222/553 (40%)
Query: 400 MMYIRGSRADYDNWAKAGNPGWSYQDVLPY--------FLKSED---------NQQATMM 442
+ Y+ + +K G + VL +L+ D + T +
Sbjct: 65 LGYV----SSLVEPSKVG----QFDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDTTL 116
Query: 443 DQGFHGVGGYLT---VTQFPYHPPLSHSIL----------------QGAM-----ELGMP 478
+ + Y+T + + P+ + ++ QG EL
Sbjct: 117 VKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEEL--- 173
Query: 479 VRDLNGVSHTGFMIAQTTTRNGSRL--------STSKAFLRPIISRNNLHILLNTTVTRV 530
RDL H ++ + L K F + + N+ L
Sbjct: 174 -RDLYQTYHV--LVGDLIKFSAETLSELIRTTLDAEKVFTQGL----NILEWLENPSNTP 226
Query: 531 IVDPLTKAA-----IGVEFLTNGRLERLQAKNEVIVCAGAVDSPRILLLSGIGPREELRR 585
D L IGV +Q + V+ ++L G P ELR
Sbjct: 227 DKDYLLSIPISCPLIGV----------IQLAHYVVTA-------KLL---GFTP-GELR- 264
Query: 586 LNIAPIHDLPGVGKNLHNHVAHFL-------NFFINDTDT-TALNW----------ATAM 627
+ + G + L A + +FF++ T L + T++
Sbjct: 265 ---SYLKGATGHSQGLV--TAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSL 319
Query: 628 EYLLFRDGLMSGTG-----LSEVTG----FVHSRLSNPAEDNPDL----QIFFSGYLANC 674
+ D L + G LS ++ V + + N L Q+ S L N
Sbjct: 320 PPSILEDSLENNEGVPSPMLS-ISNLTQEQVQDYV---NKTNSHLPAGKQVEIS--LVNG 373
Query: 675 AR----TG------------QVGERSDGMNNS-TPVPQRTISIFPTVLHPKSRGYLTLKD 717
A+ +G + + G++ S P +R + S +L
Sbjct: 374 AKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSERKLKF--------SNRFL---- 421
Query: 718 NNPQTPPLIF-ARYLT----------HPDDVKTLVDGIKIAIRLTQTAA-LQKYGFRIDT 765
P P F + L ++V I+I + T + L+ I
Sbjct: 422 --PVASP--FHSHLLVPASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVLSGSIS- 476
Query: 766 TPVKGCENLPFGCDA------YWECA----------------------IRRN---TGAEN 794
E + D WE RN TG
Sbjct: 477 ------ERI---VDCIIRLPVKWETTTQFKATHILDFGPGGASGLGVLTHRNKDGTGVRV 527
Query: 795 HQAGSCKMGPASD 807
AG+ + P D
Sbjct: 528 IVAGTLDINPDDD 540
Score = 44.7 bits (105), Expect = 2e-04
Identities = 72/459 (15%), Positives = 124/459 (27%), Gaps = 161/459 (35%)
Query: 453 LTVTQFPYHPPLSHSIL--------------QGAMELGMPVRDLNG----------VSH- 487
LT++ H L H +L Q L P V
Sbjct: 9 LTLS----HGSLEHVLLVPTASFFIASQLQEQFNKILPEPTEGFAADDEPTTPAELVGKF 64
Query: 488 TGFMIAQTTTRNGSR----LSTS-KAFLRPIISRNNLH-----ILLNTTVTRVIVDPLTK 537
G++ + + L+ F + N++H +L T V L K
Sbjct: 65 LGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDTTLVKTKELIK 124
Query: 538 AAIGVEFLTNGRLER------LQAKNEVIVCAGAVDSPRI-LLLSGIGPRE----ELRRL 586
I + ++ +A V G ++ + G G + ELR L
Sbjct: 125 NYITARIMAKRPFDKKSNSALFRA-----VGEGNA---QLVAIFGGQGNTDDYFEELRDL 176
Query: 587 NIAPIHDL--PGVGKNLHNHVAHFLNFFINDTDTTALNWATAMEYLLFRDGLMSGTGLSE 644
+ VG + D +F GL
Sbjct: 177 -----YQTYHVLVGDLIKFSAETLSELIRTTLDAEK----------VFTQGLN------- 214
Query: 645 VTGFVHSRLSNPAEDNPDLQIFFSGYLANCARTGQVGERSDGMNNSTP-----------V 693
+ L NP + PD YL + + S P V
Sbjct: 215 ----ILEWLENP-SNTPD-----KDYLLSIP----I---------SCPLIGVIQLAHYVV 251
Query: 694 PQRTISIFPTVLHPKSRGYLTLKDNNPQTPPLIFARYLTHPDDVKTLVDGIKIAIRLTQT 753
+ + P L +G L+ A + D ++ ++ AI +
Sbjct: 252 TAKLLGFTPGELRSYLKGATGHSQG------LVTAVAIAETDSWESFFVSVRKAITV--- 302
Query: 754 AALQKYGFRIDTTPVKGCENLPFGC-DAYWECAIRRNTGAENHQAGSCKMGPASDPSAVV 812
L F I G C +AY ++ + ++ + G
Sbjct: 303 --L----FFI------GVR-----CYEAYPNTSLPPSILEDSLENN---EGVP------- 335
Query: 813 SPELKVHGVDRLRVVDCSIMPAVTSGNTNAPA---IMIA 848
SP L + + + +V D V N++ PA + I+
Sbjct: 336 SPMLSISNLTQEQVQD-----YVNKTNSHLPAGKQVEIS 369
Score = 43.9 bits (103), Expect = 3e-04
Identities = 55/403 (13%), Positives = 109/403 (27%), Gaps = 154/403 (38%)
Query: 523 LNTTVTRVIVDPLTKAAIGVEFLTNGRLERLQAKNEVIVCAGAVDSPRILLLSGIGPREE 582
++ TR PLT L++G LE + ++V P +E+
Sbjct: 1 MDAYSTR----PLT--------LSHGSLE-----HVLLV-------PTASFFIASQLQEQ 36
Query: 583 LRRLNIAPI-----HDLPGVGKNLHNHVAHFLNFFINDTDTTALNWATAMEYLL------ 631
++ P D P L V FL + + + + + +L
Sbjct: 37 FNKILPEPTEGFAADDEPTTPAEL---VGKFLGYVSSLVEPSK---VGQFDQVLNLCLTE 90
Query: 632 FRDGLMSGTGLSEVTGFVHSRLSN-PAEDNPDL---QIFFSGYLANCARTGQVGERSDGM 687
F + + G +H+ + E++ L + Y+ +
Sbjct: 91 FENCYLEGND-------IHALAAKLLQENDTTLVKTKELIKNYITARIMAKR-------- 135
Query: 688 NNSTPVPQRTIS-IFPTVLHPKSRGYLTLKDNNPQTPPLIF--------------ARYLT 732
P +++ S +F V ++ IF Y T
Sbjct: 136 ----PFDKKSNSALFRAVGEGNAQLVA------------IFGGQGNTDDYFEELRDLYQT 179
Query: 733 HPDDVKTLVDGIKIAIRLTQTAALQKYGFRIDTTPVKGCENLPFGCDAY-WECAIRRNTG 791
+ V L+ A L++ T + + G + W +
Sbjct: 180 YHVLVGDLIK--FSAETLSELIR----------TTLDAEKVFTQGLNILEW---LE---- 220
Query: 792 AENHQAGSCKMGPASDP------SAVVS-P------------ELKVHGV------DRLR- 825
P++ P S +S P K+ G L+
Sbjct: 221 -----------NPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKG 269
Query: 826 VVDCS---IMPAVTS-GNTNAPAIMIAEKASDLIKQQWIGKRA 864
S + + ++ + KA ++ +IG R
Sbjct: 270 ATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLF--FIGVRC 310
Score = 40.4 bits (94), Expect = 0.003
Identities = 53/372 (14%), Positives = 98/372 (26%), Gaps = 138/372 (37%)
Query: 8 CNCPVTQPGPTLASTCGGSAYMLFMGLLEVFIRSQCDLEDPCN-RPLSRGFPDRDYDFIV 66
+ P++ P + Y++ LL P R +G
Sbjct: 232 LSIPISCPLIGVIQLA---HYVVTAKLLGF---------TPGELRSYLKG---------- 269
Query: 67 IGGGSSGAVVANRLSEMNT-------------------CNC----PVTQPGPTLASTC-- 101
G S G V A ++E ++ C P T P++
Sbjct: 270 ATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLE 329
Query: 102 ---GGSAYML-FMGL----LEVFIRSQCDLEDPCNRPLSRGF---PDRDYDFIVIGGGSS 150
G + ML L ++ ++ + + P + + +V G S
Sbjct: 330 NNEGVPSPMLSISNLTQEQVQDYVN-KTNSHLPAGKQVEISLVNGAKN---LVVSGPPQS 385
Query: 151 --GAVVANRLSEVPNWRVLLIEAGGDEPTGTQIPSMF--------LNFLGSSIDY--GYK 198
G + R ++ P +G D+ ++IP F FL + +
Sbjct: 386 LYGLNLTLRKAKAP--------SGLDQ---SRIP--FSERKLKFSNRFLPVASPFHSHLL 432
Query: 199 TEPEDMACLNNEERRCNWPRG--KVPNWRVLLIEAGGD--EPTGTQIPSMFLNFLGSSID 254
D+ + + ++ ++P V G D +G+ +
Sbjct: 433 VPASDLINKDLVKNNVSFNAKDIQIP---VYDTFDGSDLRVLSGSISERIV--------- 480
Query: 255 YGYKTEPEDMACLNNEERRCNWPR--------------GKCA-----IRRN---TGAENH 292
D W G + RN TG
Sbjct: 481 --------DCII----RLPVKWETTTQFKATHILDFGPGGASGLGVLTHRNKDGTGVRVI 528
Query: 293 QAGSCKMGPASD 304
AG+ + P D
Sbjct: 529 VAGTLDINPDDD 540
Score = 37.7 bits (87), Expect = 0.022
Identities = 42/252 (16%), Positives = 69/252 (27%), Gaps = 100/252 (39%)
Query: 470 QGAMELGM--------PV-RDL--NGVSHT----GFMIAQTTTRNGSRLSTSKAFLRPII 514
QG+ E GM +D+ +H GF I I
Sbjct: 1624 QGSQEQGMGMDLYKTSKAAQDVWNRADNHFKDTYGFSILD-------------------I 1664
Query: 515 SRNN---LHILLNTTVTRVIVDPLTKAAIGVEFLTNGRLERLQAKNEVIVCAGAVDSPRI 571
NN L I + I + + A+ E + +G+L+ + E+ +
Sbjct: 1665 VINNPVNLTIHFGGEKGKRIRENYS--AMIFETIVDGKLKTEKIFKEI--------NEHS 1714
Query: 572 LLLSGIGPREELRRLNIAPIHDLPGVGKNLHNHVAHFLNFFINDTDTT--ALNWATAMEY 629
+ + L + T T AL T ME
Sbjct: 1715 TSYTFRSEKGLL------------------------------SATQFTQPAL---TLMEK 1741
Query: 630 LLFRDGLMSGTGLSEVTGFV--HSRL-----------SNPAEDNPDLQIFFSG-YLANCA 675
F D + GL HS L E ++ +F+ G +
Sbjct: 1742 AAFED--LKSKGLIPADATFAGHS-LGEYAALASLADVMSIESLVEV-VFYRGMTMQVAV 1797
Query: 676 RTGQVGERSDGM 687
++G + GM
Sbjct: 1798 PRDELGRSNYGM 1809
Score = 35.4 bits (81), Expect = 0.10
Identities = 49/295 (16%), Positives = 84/295 (28%), Gaps = 149/295 (50%)
Query: 399 GMMYIRGSRADYDN-------WAKA-----GNPGWSYQDVL---P-----YF-----LKS 433
GM G Y W +A G+S D++ P +F +
Sbjct: 1630 GM----G-MDLYKTSKAAQDVWNRADNHFKDTYGFSILDIVINNPVNLTIHFGGEKGKRI 1684
Query: 434 EDNQQATMMDQG----------------------FHGVGGYLTVTQF--P---------- 459
+N A + + F G L+ TQF P
Sbjct: 1685 RENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQPALTLMEKAAF 1744
Query: 460 -------YHPPLS----HSI--------------LQGAMEL----G------MPVRDLNG 484
P + HS+ ++ +E+ G +P RD G
Sbjct: 1745 EDLKSKGLIPADATFAGHSLGEYAALASLADVMSIESLVEVVFYRGMTMQVAVP-RDELG 1803
Query: 485 VSHTGFMIAQTTTRNGSRLSTSKAFLRPIISRNNLHILLNTTVTRVIVDPLTKAAIGVEF 544
S+ G MIA N R++ S + + +V+ + K
Sbjct: 1804 RSNYG-MIA----INPGRVAAS----------------FSQEALQYVVERVGKR------ 1836
Query: 545 LTNGRLERLQAKN-----EVIVCAG---AVDSPRILLLSGIGPREELRRLNIAPI 591
G L ++ N + V AG A+D+ ++ + L + + I
Sbjct: 1837 --TGWL--VEIVNYNVENQQYVAAGDLRALDT-----VTNV-----LNFIKLQKI 1877
Score = 33.5 bits (76), Expect = 0.41
Identities = 39/266 (14%), Positives = 71/266 (26%), Gaps = 101/266 (37%)
Query: 3 CQMNTCNCPVTQPGPTLASTC-----GGSAYML-FMGL----LEVFIRSQCDLEDPCNRP 52
C P T P++ G + ML L ++ ++ + + P +
Sbjct: 310 CYEAY---PNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVN-KTNSHLPAGKQ 365
Query: 53 LSRGF---PDRDYDFIVIGGGSSGAVVANRL------SEMNTCNC--------------P 89
+ +V G S + L S ++ P
Sbjct: 366 VEISLVNGAKN---LVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFLP 422
Query: 90 VTQP-------------------------GPTLA----STCGGS-----AYMLFMGLLEV 115
V P + T GS + + +++
Sbjct: 423 VASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVLSGSISERIVDC 482
Query: 116 FIRSQCDLEDPCNRPLSRGFPDRDYDFIVIG-GGSSG-AVVANRLSEVPNWRVLLIEAGG 173
IR E + + G GG+SG V+ +R + G
Sbjct: 483 IIRLPVKWETTTQFKATH--------ILDFGPGGASGLGVLTHRNKD------------G 522
Query: 174 DEPTGTQ-IPSMFLNFLGSSIDYGYK 198
TG + I + L+ + DYG+K
Sbjct: 523 ---TGVRVIVAGTLD-INPDDDYGFK 544
Score = 31.2 bits (70), Expect = 2.2
Identities = 23/108 (21%), Positives = 30/108 (27%), Gaps = 31/108 (28%)
Query: 756 LQKYGFRIDTTPVKGCENLP------FGCDAYWECAIRRNTGAENHQAGSCKMGP-ASDP 808
YGF I V N P FG IR EN+ A +
Sbjct: 1654 KDTYGFSI-LDIVI--NN-PVNLTIHFG--GEKGKRIR-----ENYSAMIFETIVDGKLK 1702
Query: 809 SAVVSPELKVHGVDRLRVVDCSIM---PAVTSGNT-NA-PAIMIAEKA 851
+ + E+ H S T PA+ + EKA
Sbjct: 1703 TEKIFKEINEH--------STSYTFRSEKGLLSATQFTQPALTLMEKA 1742
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 56.4 bits (135), Expect = 3e-08
Identities = 89/659 (13%), Positives = 168/659 (25%), Gaps = 254/659 (38%)
Query: 186 LNFLGSSIDYGYKT-----EP---EDMACLNNEERRCNWPRGKVPNWRV--LLIEAGGDE 235
++F Y YK E ++ C + ++ P+ + + +++
Sbjct: 7 MDFETGEHQYQYKDILSVFEDAFVDNFDCKDVQD----MPKSILSKEEIDHIIMSKDAVS 62
Query: 236 PT----------GTQIPSMFL--------NFLGSSIDYGYKTEPEDMACLNNEERRCNWP 277
T ++ F+ FL S I + +P M + E+R +
Sbjct: 63 GTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQR-QPSMMTRMYIEQRDRLY- 120
Query: 278 RGKCAIRRNTGAENHQAGSCKMGPASDPSAVVSPELKVHGVDRLRVVDCSIMPAVTSGSA 337
N V + +LR
Sbjct: 121 --------NDN------------QVFAKYNVSRLQP----YLKLR--------------- 141
Query: 338 PLGGIQALRITRQDLVRWDQHLILALSCHRNSKSMVWTG-SVLWTAVSCLLSPVLGGTSV 396
QAL R +++++ ++ +G + + CL V
Sbjct: 142 -----QALLELRPA-----KNVLI----D----GVLGSGKTWV-ALDVCLSYKVQ---CK 179
Query: 397 LNGMMYIRGSRADYDNWAKAGNPGWSYQDV------LPYFLKSEDNQQATMMD---QGFH 447
++ ++ W N S + V L Y + ++ H
Sbjct: 180 MDFKIF----------WLNLKNCN-SPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIH 228
Query: 448 GVGGYLTVTQFPYHPPLSHS--ILQGAMELGMPVRDLNGVSHTGFMI-AQT--TTRNGSR 502
+ L + P + +L V++ + F + + TTR
Sbjct: 229 SIQAELR--RLLKSKPYENCLLVLLN-------VQNAKAWNA--FNLSCKILLTTRF--- 274
Query: 503 LSTSKAFLRPIISRNNLHILLNTTVTRVIVDPLTKAAIGVEFLTNGRLERLQAKNEVIVC 562
+ L T T + +D + LT ++ L K
Sbjct: 275 -------------KQVTDFLSAATTTHISLDHHSMT------LTPDEVKSLLLK-----Y 310
Query: 563 AGAVDSPRILLLSGIGPREELRRLNIAPIHDLPGVGKNLHNHVAHFLNFFINDTDTTALN 622
P+ L PRE L P L + +++ + +A + N+ + L
Sbjct: 311 LDC--RPQDL------PREVLT---TNPRR-LSIIAESIRDGLATWDNW--KHVNCDKLT 356
Query: 623 WATAMEYLLFRDGLMSGTGLSEVTGFVHSRLSNPAEDNP---DLQIFFSGYLANCARTGQ 679
T +E + L PAE L +F
Sbjct: 357 --TIIE--SSLNVL------------------EPAEYRKMFDRLSVF------------- 381
Query: 680 VGERSDGMNNSTPVPQRTISIF------------PTVLHPKSRGYLTLKDNNPQTP--PL 725
S +P +S+ LH S L K T P
Sbjct: 382 --------PPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYS---LVEKQPKESTISIPS 430
Query: 726 IFARYLTHPDDVKTLVDGIKIAIRLTQTAALQKYGFRIDTTPVKGCEN--LPFGCDAYW 782
I+ ++ L I + Y P + +P D Y+
Sbjct: 431 IYLELKVKLENEYALHRSI-----------VDHYNI-----PKTFDSDDLIPPYLDQYF 473
Score = 48.7 bits (115), Expect = 8e-06
Identities = 72/505 (14%), Positives = 136/505 (26%), Gaps = 137/505 (27%)
Query: 409 DYDNWAKAGNPGWSYQDVLPYFLKSEDNQQATMMDQGFHGVGGYLTVTQFPYHPPLSHSI 468
D++ G + Y+D+L F + A + + V SI
Sbjct: 8 DFE----TGEHQYQYKDILSVF------EDAFVDNFDCKDVQDMP------------KSI 45
Query: 469 LQGAMELGMPVRDLNGVSHTGFMIAQTTTRNGSRLSTSKAFLRPIISRNNLHILLNTTVT 528
L E+ + + VS T + T + F+ ++ N ++
Sbjct: 46 LSKE-EIDHIIMSKDAVSGTLRLF-WTLLSKQE--EMVQKFVEEVLRIN-----YKFLMS 96
Query: 529 RVIVDPLTKAAIGVEFLTNGRLERLQAKNEVIVCAGAVDSPRILLLSGIGPREELRRLNI 588
+ + + + ++ + +RL N+V V R+ + R+ L L
Sbjct: 97 PIKTEQRQPSMMTRMYIE--QRDRLYNDNQVFA-KYNV--SRLQPYLKL--RQALLELRP 149
Query: 589 AP---IHDLPGVGKN-LHNHVAHFLNFFINDTDTTALN-----WATAMEYLLFRDGLMSG 639
A I + G GK + V W
Sbjct: 150 AKNVLIDGVLGSGKTWVALDVC-------LSYKVQCKMDFKIFWLN-------------- 188
Query: 640 TGLSEVTGFVHSRLSNPAEDNPDLQIFFSGYLAN-CARTGQVG-ERSDGMNNSTPVPQRT 697
L N L++ L + RSD +N + R
Sbjct: 189 -------------LKNCNSPETVLEM-----LQKLLYQIDPNWTSRSDHSSN---IKLRI 227
Query: 698 ISI-------FPTVLHPKSRGYLTLKD-NNPQT--------PPLIFARYLTHPDDVK--- 738
SI + + L L + N + L+ R+ D +
Sbjct: 228 HSIQAELRRLLKSKPYENC--LLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAAT 285
Query: 739 -TLVDGIKIAIRLTQTAALQ---KY-GFRIDTTPVKGCENLPFGCDAYWECAIRRNTGAE 793
T + ++ LT KY R P + P E +IR
Sbjct: 286 TTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAE-SIRDGLATW 344
Query: 794 NH--QAGSCKMGPASDPS-AVVSPELKVHGVDRLRVVDCSIMPAVTSGNTNAPAIMIA-- 848
++ K+ + S V+ P R S+ P + + P I+++
Sbjct: 345 DNWKHVNCDKLTTIIESSLNVLEPAE-----YRKMFDRLSVFPP----SAHIPTILLSLI 395
Query: 849 -----EKASDLIKQQWIGKRAWNKW 868
+ ++ + K
Sbjct: 396 WFDVIKSDVMVVVNKLHKYSLVEKQ 420
>1v0j_A UDP-galactopyranose mutase; flavoprotein, isomerase; HET: FAD BCN;
2.25A {Mycobacterium tuberculosis}
Length = 399
Score = 47.8 bits (113), Expect = 1e-05
Identities = 11/31 (35%), Positives = 19/31 (61%)
Query: 140 YDFIVIGGGSSGAVVANRLSEVPNWRVLLIE 170
+D V+G G G +A R++ + RVL++E
Sbjct: 8 FDLFVVGSGFFGLTIAERVATQLDKRVLVLE 38
Score = 35.9 bits (82), Expect = 0.054
Identities = 7/21 (33%), Positives = 12/21 (57%)
Query: 62 YDFIVIGGGSSGAVVANRLSE 82
+D V+G G G +A R++
Sbjct: 8 FDLFVVGSGFFGLTIAERVAT 28
>3hdq_A UDP-galactopyranose mutase; substrate and inhibitor, isomerase;
HET: GDU FAD; 2.36A {Deinococcus radiodurans} PDB:
3hdy_A* 3he3_A* 3mj4_A*
Length = 397
Score = 47.1 bits (111), Expect = 2e-05
Identities = 11/44 (25%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Query: 128 NRPLSRGFPDRDYDFIVIGGGSSGAVVANRLSEVPNWRVLLIEA 171
+ + +D++++G G +G+V+A RL+ RVL+++
Sbjct: 18 TNTTNEQQESKGFDYLIVGAGFAGSVLAERLASS-GQRVLIVDR 60
Score = 39.4 bits (91), Expect = 0.004
Identities = 8/35 (22%), Positives = 19/35 (54%)
Query: 50 NRPLSRGFPDRDYDFIVIGGGSSGAVVANRLSEMN 84
+ + +D++++G G +G+V+A RL+
Sbjct: 18 TNTTNEQQESKGFDYLIVGAGFAGSVLAERLASSG 52
>3utf_A UDP-galactopyranose mutase; nucleotide binding, flavin adenine
dinucleotide BIND isomerase; HET: FDA; 2.25A
{Aspergillus fumigatus} PDB: 3ute_A* 3utg_A* 3uth_A*
3ukh_A* 3ukf_A* 3uka_A* 3ukl_A* 3ukk_A* 3ukq_A* 3ukp_A*
Length = 513
Score = 46.8 bits (110), Expect = 3e-05
Identities = 13/42 (30%), Positives = 23/42 (54%), Gaps = 4/42 (9%)
Query: 136 PDRDYDFIVIGGGSSGAVVANRLSEVPNWRVLLIEA----GG 173
PD D +VIG G +G A RL+++ +++++ GG
Sbjct: 7 PDISVDVLVIGAGPTGLGAAKRLNQIDGPSWMIVDSNETPGG 48
Score = 35.6 bits (81), Expect = 0.077
Identities = 11/27 (40%), Positives = 17/27 (62%)
Query: 58 PDRDYDFIVIGGGSSGAVVANRLSEMN 84
PD D +VIG G +G A RL++++
Sbjct: 7 PDISVDVLVIGAGPTGLGAAKRLNQID 33
>1i8t_A UDP-galactopyranose mutase; rossman fold, FAD, contractase,
isomerase; HET: FAD; 2.40A {Escherichia coli} SCOP:
c.4.1.3 d.16.1.7
Length = 367
Score = 44.7 bits (105), Expect = 1e-04
Identities = 18/38 (47%), Positives = 25/38 (65%), Gaps = 5/38 (13%)
Query: 140 YDFIVIGGGSSGAVVANRLSEVPNWRVLLIEA----GG 173
YD+I++G G GAV AN L ++ N +VL+IE GG
Sbjct: 2 YDYIIVGSGLFGAVCANELKKL-NKKVLVIEKRNHIGG 38
Score = 37.0 bits (85), Expect = 0.023
Identities = 12/23 (52%), Positives = 17/23 (73%)
Query: 62 YDFIVIGGGSSGAVVANRLSEMN 84
YD+I++G G GAV AN L ++N
Sbjct: 2 YDYIIVGSGLFGAVCANELKKLN 24
>2bi7_A UDP-galactopyranose mutase; FAD, flavoprotein, isomerase,
lipopolysaccharide biosynthesi; HET: FAD; 2.0A
{Klebsiella pneumoniae} SCOP: c.4.1.3 d.16.1.7 PDB:
2bi8_A* 1wam_A* 3inr_A* 3gf4_A* 3int_A* 3kyb_A*
Length = 384
Score = 43.9 bits (103), Expect = 2e-04
Identities = 12/38 (31%), Positives = 21/38 (55%), Gaps = 5/38 (13%)
Query: 140 YDFIVIGGGSSGAVVANRLSEVPNWRVLLIEA----GG 173
+++G G SGAV+ +L+E +V +I+ GG
Sbjct: 4 KKILIVGAGFSGAVIGRQLAEK-GHQVHIIDQRDHIGG 40
Score = 36.6 bits (84), Expect = 0.035
Identities = 8/23 (34%), Positives = 14/23 (60%)
Query: 62 YDFIVIGGGSSGAVVANRLSEMN 84
+++G G SGAV+ +L+E
Sbjct: 4 KKILIVGAGFSGAVIGRQLAEKG 26
>1fec_A Trypanothione reductase; redox-active center, oxidoreductase,
flavoprotein, FAD, NADP; HET: FAD; 1.70A {Crithidia
fasciculata} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1fea_A*
1feb_A* 2tpr_A* 1tyt_A* 1typ_A* 2jk6_A* 2w0h_A* 2yau_A*
2x50_A* 2ve2_A*
Length = 490
Score = 43.7 bits (104), Expect = 2e-04
Identities = 12/43 (27%), Positives = 17/43 (39%)
Query: 138 RDYDFIVIGGGSSGAVVANRLSEVPNWRVLLIEAGGDEPTGTQ 180
R YD +VIG GS G + + RV +I+
Sbjct: 2 RAYDLVVIGAGSGGLEAGWNAASLHKKRVAVIDLQKHHGPPHY 44
Score = 36.0 bits (84), Expect = 0.048
Identities = 9/24 (37%), Positives = 12/24 (50%)
Query: 60 RDYDFIVIGGGSSGAVVANRLSEM 83
R YD +VIG GS G + +
Sbjct: 2 RAYDLVVIGAGSGGLEAGWNAASL 25
>3c4n_A Uncharacterized protein DR_0571; alpha-beta protein, structural
genomics, PSI-2, protein structure initiative; HET: ADP;
2.40A {Deinococcus radiodurans R1}
Length = 405
Score = 43.1 bits (100), Expect = 3e-04
Identities = 16/40 (40%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Query: 135 FPDRDYDFIVIGGGSSGAVVANRLSEV-PNWRVLLIEAGG 173
F + +D +VIG G GA A L ++ P +LL+E GG
Sbjct: 32 FTEEAFDIVVIGAGRMGAACAFYLRQLAPGRSLLLVEEGG 71
Score = 34.7 bits (78), Expect = 0.12
Identities = 10/28 (35%), Positives = 15/28 (53%)
Query: 57 FPDRDYDFIVIGGGSSGAVVANRLSEMN 84
F + +D +VIG G GA A L ++
Sbjct: 32 FTEEAFDIVVIGAGRMGAACAFYLRQLA 59
>2wpf_A Trypanothione reductase; oxidoreductase, trypanosomiasis, sleeping
sickness, flavoPro redox-active center; HET: FAD WPF;
1.90A {Trypanosoma brucei} PDB: 2wov_A* 2wow_A* 2wp5_A*
2wp6_A* 2wpc_A* 2wpe_A* 2woi_A* 2wba_A* 1nda_A* 1gxf_A*
1bzl_A* 1aog_A*
Length = 495
Score = 43.3 bits (103), Expect = 3e-04
Identities = 13/85 (15%), Positives = 30/85 (35%), Gaps = 19/85 (22%)
Query: 138 RDYDFIVIGGGSSGAVVANRLSEVPNWRVLLIEAGGDEPTGTQ------------IP--- 182
+ +D +VIG GS G + + RV +++ +P
Sbjct: 6 KAFDLVVIGAGSGGLEAGWNAATLYGKRVAVVDVQTSHGPPFYAALGGTCVNVGCVPKKL 65
Query: 183 ----SMFLNFLGSSIDYGYKTEPED 203
+ +++ L S +G++ +
Sbjct: 66 MVTGAQYMDHLRESAGFGWEFDGSS 90
Score = 34.9 bits (81), Expect = 0.11
Identities = 7/24 (29%), Positives = 12/24 (50%)
Query: 60 RDYDFIVIGGGSSGAVVANRLSEM 83
+ +D +VIG GS G + +
Sbjct: 6 KAFDLVVIGAGSGGLEAGWNAATL 29
>4at0_A 3-ketosteroid-delta4-5alpha-dehydrogenase; oxidoreductase,
dehydogenase, steroid catabolism; HET: FAD; 1.60A
{Rhodococcus jostii} PDB: 4at2_A*
Length = 510
Score = 42.7 bits (101), Expect = 4e-04
Identities = 28/195 (14%), Positives = 62/195 (31%), Gaps = 24/195 (12%)
Query: 388 SPVLGGTSVLN-GMMYI-RGSRADYDNWAKAGNPGWSYQDVLPYFLKSEDNQ-----QAT 440
+ GG + L G +Y+ G+ KA S +++ + + +
Sbjct: 73 TSGWGGATALAGGFIYLGGGTP-----LQKACGFDDSPENMKTFMMAALGPGADEEKITD 127
Query: 441 MMDQGF--------HGVGGYLTVTQFP-YHPPLSHSILQGAMELGMPVRDLNGVSHTGFM 491
+ GV + P + PP ++ E P ++ + G +
Sbjct: 128 YCEGSVEHYNWLVDCGVPFKESFWGEPGWEPPFDDGLMYSGGENAAPFNEIAAPAPRGHV 187
Query: 492 IAQTTTRNGSRLSTSK--AFLRPIISRNNLHILLNTTVTRVIVDPLTKAAIGVEFLTNGR 549
R G + L + + + V ++ D T +G+ G+
Sbjct: 188 PQMDGKRTGEKGGGYMLMKPLVETAEKLGVRAEYDMRVQTLVTDD-TGRVVGIVAKQYGK 246
Query: 550 LERLQAKNEVIVCAG 564
++A+ V++ G
Sbjct: 247 EVAVRARRGVVLATG 261
Score = 29.2 bits (66), Expect = 6.2
Identities = 13/44 (29%), Positives = 20/44 (45%), Gaps = 11/44 (25%)
Query: 137 DRDYDFIVIGGGSSG---AVVANRLSEVPNWRVLLIE----AGG 173
D + D +V G G +G ++ A R VL++E GG
Sbjct: 39 DYEADVVVAGYGIAGVAASIEAARAGA----DVLVLERTSGWGG 78
Score = 29.2 bits (66), Expect = 7.2
Identities = 6/19 (31%), Positives = 10/19 (52%)
Query: 59 DRDYDFIVIGGGSSGAVVA 77
D + D +V G G +G +
Sbjct: 39 DYEADVVVAGYGIAGVAAS 57
>2r9z_A Glutathione amide reductase; NAD, FAD, substrate specificity,
oxidoreductase; HET: FAD; 2.10A {Marichromatium gracile}
PDB: 2rab_A*
Length = 463
Score = 42.5 bits (101), Expect = 5e-04
Identities = 15/36 (41%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Query: 138 RDYDFIVIGGGSSGAVVANRLSEVPNWRVLLIEAGG 173
+ +D I IGGGS G VA + + RV LIE+
Sbjct: 3 QHFDLIAIGGGSGGLAVAEKAAAF-GKRVALIESKA 37
Score = 37.1 bits (87), Expect = 0.021
Identities = 10/20 (50%), Positives = 13/20 (65%)
Query: 60 RDYDFIVIGGGSSGAVVANR 79
+ +D I IGGGS G VA +
Sbjct: 3 QHFDLIAIGGGSGGLAVAEK 22
>3dgz_A Thioredoxin reductase 2; oxidoreductase, rossmann, flavoprotein,
FAD, mitochondrion, redox-active center, selenium,
selenocysteine, transit PEPT; HET: FAD NA7; 2.25A {Mus
musculus} PDB: 1zkq_A* 1zdl_A*
Length = 488
Score = 42.5 bits (101), Expect = 5e-04
Identities = 13/44 (29%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Query: 137 DRDYDFIVIGGGSSGAVVANRLSEVPNWRVLLIEAGGDEPTGTQ 180
+ +D +VIGGGS G A +++ +V + + P GT+
Sbjct: 4 QQSFDLLVIGGGSGGLACAKEAAQL-GKKVAVADYVEPSPRGTK 46
Score = 37.5 bits (88), Expect = 0.019
Identities = 9/21 (42%), Positives = 12/21 (57%)
Query: 59 DRDYDFIVIGGGSSGAVVANR 79
+ +D +VIGGGS G A
Sbjct: 4 QQSFDLLVIGGGSGGLACAKE 24
>3dme_A Conserved exported protein; structural genomics, PSI-2, PROT
structure initiative, northeast structural genomics
consort NESG; HET: FAD TLA; 1.70A {Bordetella pertussis}
Length = 369
Score = 42.1 bits (100), Expect = 5e-04
Identities = 17/41 (41%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
Query: 139 DYDFIVIGGGSSGAVVANRLSEVPNWRVLLIEAGGDEPTGT 179
D D IVIG G G +A L+ VL+ EA TGT
Sbjct: 4 DIDCIVIGAGVVGLAIARALAA-GGHEVLVAEAAEGIGTGT 43
Score = 32.1 bits (74), Expect = 0.85
Identities = 10/21 (47%), Positives = 12/21 (57%)
Query: 61 DYDFIVIGGGSSGAVVANRLS 81
D D IVIG G G +A L+
Sbjct: 4 DIDCIVIGAGVVGLAIARALA 24
>3qfa_A Thioredoxin reductase 1, cytoplasmic; protein-protein complex,
rossmann fold, HO pyridine nucleotide disulfide
oxidoreductase, electron TRAN oxidoreductase; HET: FAD;
2.20A {Homo sapiens} PDB: 3qfb_A* 2j3n_A* 2zzc_A*
2zzb_A* 2zz0_A* 2cfy_A* 1h6v_A* 3ean_A* 3eao_A*
Length = 519
Score = 41.8 bits (99), Expect = 8e-04
Identities = 15/42 (35%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
Query: 139 DYDFIVIGGGSSGAVVANRLSEVPNWRVLLIEAGGDEPTGTQ 180
DYD I+IGGGS G A ++ +V++++ P GT+
Sbjct: 32 DYDLIIIGGGSGGLAAAKEAAQY-GKKVMVLDFVTPTPLGTR 72
Score = 37.2 bits (87), Expect = 0.024
Identities = 11/19 (57%), Positives = 12/19 (63%)
Query: 61 DYDFIVIGGGSSGAVVANR 79
DYD I+IGGGS G A
Sbjct: 32 DYDLIIIGGGSGGLAAAKE 50
>4dna_A Probable glutathione reductase; structural genomics, protein
structure initiative, NEW YORK structural genomix
research consortium; HET: FAD; 2.80A {Sinorhizobium
meliloti}
Length = 463
Score = 41.7 bits (99), Expect = 0.001
Identities = 12/35 (34%), Positives = 16/35 (45%), Gaps = 1/35 (2%)
Query: 139 DYDFIVIGGGSSGAVVANRLSEVPNWRVLLIEAGG 173
DYD VIGGGS G + + +V + E
Sbjct: 5 DYDLFVIGGGSGGVRSGRLAAAL-GKKVAIAEEFR 38
Score = 37.5 bits (88), Expect = 0.018
Identities = 10/19 (52%), Positives = 10/19 (52%)
Query: 61 DYDFIVIGGGSSGAVVANR 79
DYD VIGGGS G
Sbjct: 5 DYDLFVIGGGSGGVRSGRL 23
>2hqm_A GR, grase, glutathione reductase; glutathione reductase complexed
with FAD, oxidoreductase; HET: NAG FAD GSH; 2.40A
{Saccharomyces cerevisiae}
Length = 479
Score = 41.0 bits (97), Expect = 0.001
Identities = 15/35 (42%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Query: 139 DYDFIVIGGGSSGAVVANRLSEVPNWRVLLIEAGG 173
YD++VIGGGS G A R + + LL+EA
Sbjct: 11 HYDYLVIGGGSGGVASARRAASY-GAKTLLVEAKA 44
Score = 37.9 bits (89), Expect = 0.015
Identities = 11/19 (57%), Positives = 13/19 (68%)
Query: 61 DYDFIVIGGGSSGAVVANR 79
YD++VIGGGS G A R
Sbjct: 11 HYDYLVIGGGSGGVASARR 29
>2gjc_A Thiazole biosynthetic enzyme, mitochondrial; glutathione reductase
type II family, thiazole synthase, mitochondria DNA
repair; HET: AHZ; 1.82A {Saccharomyces cerevisiae} SCOP:
c.3.1.6 PDB: 3fpz_A*
Length = 326
Score = 40.9 bits (95), Expect = 0.001
Identities = 16/54 (29%), Positives = 27/54 (50%), Gaps = 6/54 (11%)
Query: 139 DYDFIVIGGGSSGAVVANRLSEV-PNWRVLLIEA-----GGDEPTGTQIPSMFL 186
D I++G GSSG A +++ P+ +V +IE+ GG G +M +
Sbjct: 65 VSDVIIVGAGSSGLSAAYVIAKNRPDLKVCIIESSVAPGGGSWLGGQLFSAMVM 118
Score = 32.1 bits (72), Expect = 0.70
Identities = 8/24 (33%), Positives = 13/24 (54%)
Query: 61 DYDFIVIGGGSSGAVVANRLSEMN 84
D I++G GSSG A +++
Sbjct: 65 VSDVIIVGAGSSGLSAAYVIAKNR 88
>2x8g_A Thioredoxin glutathione reductase; redox-active center,
detoxification pathway, oxidoreductase, flavoprotein;
HET: FAD PG4; 1.90A {Schistosoma mansoni} PDB: 2x8c_A*
2x8h_A* 2x99_A* 3h4k_A* 2v6o_A*
Length = 598
Score = 41.2 bits (97), Expect = 0.001
Identities = 22/121 (18%), Positives = 40/121 (33%), Gaps = 34/121 (28%)
Query: 139 DYDFIVIGGGSSGAVVANRLSEVPNWRVLLIEAGGDEPTGTQ------------IP---- 182
DYD IVIGGGS G ++ + +++ P GT IP
Sbjct: 107 DYDLIVIGGGSGGLAAGKEAAKY-GAKTAVLDYVEPTPIGTTWGLGGTCVNVGCIPKKLM 165
Query: 183 ---SMFLNFLGSSIDYGYKTEPED--------MACLNNEERRCNWPRGKVPNWRVLLIEA 231
+ + L + +G+ + + + + NW ++V L +
Sbjct: 166 HQAGLLSHALEDAEHFGWSLDRSKISHNWSTMVEGVQSHIGSLNW------GYKVALRDN 219
Query: 232 G 232
Sbjct: 220 Q 220
Score = 36.5 bits (85), Expect = 0.040
Identities = 11/22 (50%), Positives = 13/22 (59%)
Query: 61 DYDFIVIGGGSSGAVVANRLSE 82
DYD IVIGGGS G ++
Sbjct: 107 DYDLIVIGGGSGGLAAGKEAAK 128
>3dk9_A Grase, GR, glutathione reductase; flavoenzyme, nicotinamide,
acetylation, alternative initiation, cytoplasm, FAD,
flavoprotein, mitochondrion, NADP; HET: SO4 FAD; 0.95A
{Homo sapiens} PDB: 1bwc_A* 1gra_A* 1gre_A* 1grf_A*
1grh_A* 1grb_A* 2gh5_A* 1gsn_A* 3dk4_A* 3dk8_A* 3djj_A*
3grs_A* 3sqp_A* 4gr1_A* 2aaq_A* 1dnc_A* 1grg_A* 1grt_A*
1xan_A* 5grt_A* ...
Length = 478
Score = 40.9 bits (97), Expect = 0.002
Identities = 15/46 (32%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
Query: 128 NRPLSRGFPDRDYDFIVIGGGSSGAVVANRLSEVPNWRVLLIEAGG 173
P YD++VIGGGS G A R +E+ R ++E+
Sbjct: 9 QGPPPAAGAVASYDYLVIGGGSGGLASARRAAEL-GARAAVVESHK 53
Score = 37.9 bits (89), Expect = 0.014
Identities = 12/30 (40%), Positives = 14/30 (46%)
Query: 50 NRPLSRGFPDRDYDFIVIGGGSSGAVVANR 79
P YD++VIGGGS G A R
Sbjct: 9 QGPPPAAGAVASYDYLVIGGGSGGLASARR 38
>1onf_A GR, grase, glutathione reductase; oxidoreductase; HET: FAD; 2.60A
{Plasmodium falciparum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1
Length = 500
Score = 40.7 bits (96), Expect = 0.002
Identities = 16/35 (45%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Query: 139 DYDFIVIGGGSSGAVVANRLSEVPNWRVLLIEAGG 173
YD IVIGGGS G A R + N +V L+E
Sbjct: 2 VYDLIVIGGGSGGMAAARRAARH-NAKVALVEKSR 35
Score = 38.0 bits (89), Expect = 0.012
Identities = 12/19 (63%), Positives = 12/19 (63%)
Query: 61 DYDFIVIGGGSSGAVVANR 79
YD IVIGGGS G A R
Sbjct: 2 VYDLIVIGGGSGGMAAARR 20
>3o0h_A Glutathione reductase; ssgcid, structur genomics, seattle
structural genomics center for infectious gluathione
reductase, oxidoreductase; HET: FAD; 1.90A {Bartonella
henselae}
Length = 484
Score = 40.6 bits (96), Expect = 0.002
Identities = 12/38 (31%), Positives = 15/38 (39%), Gaps = 1/38 (2%)
Query: 136 PDRDYDFIVIGGGSSGAVVANRLSEVPNWRVLLIEAGG 173
D+D VIG GS G A + RV + E
Sbjct: 23 GSFDFDLFVIGSGSGGVRAARLAGAL-GKRVAIAEEYR 59
Score = 37.9 bits (89), Expect = 0.013
Identities = 9/22 (40%), Positives = 10/22 (45%)
Query: 58 PDRDYDFIVIGGGSSGAVVANR 79
D+D VIG GS G A
Sbjct: 23 GSFDFDLFVIGSGSGGVRAARL 44
>3cgv_A Geranylgeranyl reductase related protein; NP_393992.1,
geranylgeranyl bacteriochlorophyll reductase- like FIXC
homolog; HET: MSE FAD UNL; 1.60A {Thermoplasma
acidophilum dsm 1728} PDB: 3oz2_A*
Length = 397
Score = 40.4 bits (95), Expect = 0.002
Identities = 11/39 (28%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
Query: 139 DYDFIVIGGGSSGAVVANRLSEVPNWRVLLIEAGGDEPT 177
YD +V+GGG G+ A ++ + L+IE + +
Sbjct: 4 TYDVLVVGGGPGGSTAARYAAK-YGLKTLMIEKRPEIGS 41
Score = 32.7 bits (75), Expect = 0.50
Identities = 8/22 (36%), Positives = 13/22 (59%)
Query: 61 DYDFIVIGGGSSGAVVANRLSE 82
YD +V+GGG G+ A ++
Sbjct: 4 TYDVLVVGGGPGGSTAARYAAK 25
>1ges_A Glutathione reductase; oxidoreductase(flavoenzyme); HET: FAD; 1.74A
{Escherichia coli} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB:
1geu_A* 1ger_A* 1get_A*
Length = 450
Score = 39.8 bits (94), Expect = 0.003
Identities = 15/36 (41%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
Query: 138 RDYDFIVIGGGSSGAVVANRLSEVPNWRVLLIEAGG 173
+ YD+I IGGGS G NR + + LIEA
Sbjct: 3 KHYDYIAIGGGSGGIASINRAAMY-GQKCALIEAKE 37
Score = 36.7 bits (86), Expect = 0.030
Identities = 11/23 (47%), Positives = 14/23 (60%)
Query: 60 RDYDFIVIGGGSSGAVVANRLSE 82
+ YD+I IGGGS G NR +
Sbjct: 3 KHYDYIAIGGGSGGIASINRAAM 25
>1rp0_A ARA6, thiazole biosynthetic enzyme; protein ligand complex,
biosynthetic protein; HET: AHZ HTO; 1.60A {Arabidopsis
thaliana} SCOP: c.3.1.6
Length = 284
Score = 39.3 bits (91), Expect = 0.004
Identities = 13/34 (38%), Positives = 21/34 (61%)
Query: 139 DYDFIVIGGGSSGAVVANRLSEVPNWRVLLIEAG 172
+ D +V+G GS+G A +S+ PN +V +IE
Sbjct: 39 ETDVVVVGAGSAGLSAAYEISKNPNVQVAIIEQS 72
Score = 28.5 bits (63), Expect = 9.3
Identities = 8/22 (36%), Positives = 14/22 (63%)
Query: 61 DYDFIVIGGGSSGAVVANRLSE 82
+ D +V+G GS+G A +S+
Sbjct: 39 ETDVVVVGAGSAGLSAAYEISK 60
>3dgh_A TRXR-1, thioredoxin reductase 1, mitochondrial; oxidoreductase,
rossmann, flavoprotein, alternative initiati
mitochondrion, NADP; HET: FAD; 1.75A {Drosophila
melanogaster} PDB: 2nvk_X* 3dh9_A*
Length = 483
Score = 39.1 bits (92), Expect = 0.005
Identities = 15/41 (36%), Positives = 18/41 (43%), Gaps = 1/41 (2%)
Query: 136 PDRDYDFIVIGGGSSGAVVANRLSEVPNWRVLLIEAGGDEP 176
DYD IVIGGGS+G A RV ++ P
Sbjct: 6 GSYDYDLIVIGGGSAGLACAKEAVLN-GARVACLDFVKPTP 45
Score = 37.5 bits (88), Expect = 0.020
Identities = 12/22 (54%), Positives = 13/22 (59%)
Query: 58 PDRDYDFIVIGGGSSGAVVANR 79
DYD IVIGGGS+G A
Sbjct: 6 GSYDYDLIVIGGGSAGLACAKE 27
>3axb_A Putative oxidoreductase; dinucleotide-binding fold; HET: FAD; 1.92A
{Aeropyrum pernix} PDB: 3vqr_A*
Length = 448
Score = 39.0 bits (91), Expect = 0.006
Identities = 13/51 (25%), Positives = 21/51 (41%), Gaps = 4/51 (7%)
Query: 126 PCNRPLSRGFPDRD----YDFIVIGGGSSGAVVANRLSEVPNWRVLLIEAG 172
+ S P +D++V+G G G A L VL+++AG
Sbjct: 6 HHHHHSSGLVPRGSHMPRFDYVVVGAGVVGLAAAYYLKVWSGGSVLVVDAG 56
Score = 29.8 bits (67), Expect = 4.0
Identities = 9/40 (22%), Positives = 14/40 (35%), Gaps = 4/40 (10%)
Query: 48 PCNRPLSRGFPDRD----YDFIVIGGGSSGAVVANRLSEM 83
+ S P +D++V+G G G A L
Sbjct: 6 HHHHHSSGLVPRGSHMPRFDYVVVGAGVVGLAAAYYLKVW 45
>3atr_A Conserved archaeal protein; saturating double bonds, archaeal
membrane precursor, like 2 geranylgeranylglyceryl
phosphate; HET: FDA; 1.80A {Sulfolobus acidocaldarius}
PDB: 3atq_A*
Length = 453
Score = 39.0 bits (91), Expect = 0.007
Identities = 12/39 (30%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
Query: 136 PDRDYDFIVIGGGSSGAVVANRLSEVPNWRVLLIEAGGD 174
+ YD ++IGGG +G+ A +LS ++LL+++
Sbjct: 3 KELKYDVLIIGGGFAGSSAAYQLSR-RGLKILLVDSKPW 40
Score = 31.3 bits (71), Expect = 1.3
Identities = 10/25 (40%), Positives = 16/25 (64%)
Query: 58 PDRDYDFIVIGGGSSGAVVANRLSE 82
+ YD ++IGGG +G+ A +LS
Sbjct: 3 KELKYDVLIIGGGFAGSSAAYQLSR 27
>4dsg_A UDP-galactopyranose mutase; rossmann fold, flavin adenine
dinucleotide, isomerase; HET: FAD UDP; 2.25A
{Trypanosoma cruzi} PDB: 4dsh_A*
Length = 484
Score = 38.3 bits (88), Expect = 0.010
Identities = 17/58 (29%), Positives = 26/58 (44%), Gaps = 3/58 (5%)
Query: 140 YDFIVIGGGSSGAVVANRLSEVPNWRVLLIEAGGDEPTGTQIPSMFLNFLGSSIDYGY 197
++IG G +G A RL+E+ L E ++ G S FL+ G + D G
Sbjct: 10 PKIVIIGAGPTGLGAAVRLTELGYKNWHLYEC--NDTPGGLSRS-FLDENGFTWDLGG 64
Score = 30.2 bits (67), Expect = 3.3
Identities = 8/23 (34%), Positives = 13/23 (56%)
Query: 62 YDFIVIGGGSSGAVVANRLSEMN 84
++IG G +G A RL+E+
Sbjct: 10 PKIVIIGAGPTGLGAAVRLTELG 32
>2b9w_A Putative aminooxidase; isomerase, conjugated linoleic acid, FAD;
HET: FAD 12P; 1.95A {Propionibacterium acnes} PDB:
2b9x_A* 2b9y_A* 2ba9_A* 2bab_A* 2bac_A*
Length = 424
Score = 37.9 bits (88), Expect = 0.012
Identities = 9/40 (22%), Positives = 15/40 (37%), Gaps = 4/40 (10%)
Query: 138 RDYDFIVIGGGSSGAVVANRLSEVPNWRVLLIEA----GG 173
+D +IG G +G L + ++E GG
Sbjct: 5 KDSRIAIIGAGPAGLAAGMYLEQAGFHDYTILERTDHVGG 44
Score = 31.0 bits (70), Expect = 2.0
Identities = 6/24 (25%), Positives = 10/24 (41%)
Query: 60 RDYDFIVIGGGSSGAVVANRLSEM 83
+D +IG G +G L +
Sbjct: 5 KDSRIAIIGAGPAGLAAGMYLEQA 28
>1w4x_A Phenylacetone monooxygenase; baeyer-villiger, FAD; HET: FAD; 1.7A
{Thermobifida fusca} SCOP: c.3.1.5 c.3.1.5 PDB: 2ylr_A*
2yls_A* 2ylt_A* 2ym1_A* 2ylw_A* 2ym2_A* 2ylx_A* 2ylz_A*
Length = 542
Score = 37.9 bits (89), Expect = 0.015
Identities = 17/43 (39%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
Query: 132 SRGFPDRDYDFIVIGGGSSGAVVANRLSEVPNWRVLLIEAGGD 174
SR P + D +V+G G SG RL E V +IE GD
Sbjct: 9 SRRQPPEEVDVLVVGAGFSGLYALYRLRE-LGRSVHVIETAGD 50
Score = 30.6 bits (70), Expect = 2.7
Identities = 12/31 (38%), Positives = 16/31 (51%)
Query: 54 SRGFPDRDYDFIVIGGGSSGAVVANRLSEMN 84
SR P + D +V+G G SG RL E+
Sbjct: 9 SRRQPPEEVDVLVVGAGFSGLYALYRLRELG 39
>2yg5_A Putrescine oxidase; oxidoreductase, flavin; HET: FAD; 1.90A
{Rhodococcus erythropolis} PDB: 2yg6_A* 2yg3_A* 2yg4_A*
2yg7_A* 3rha_A*
Length = 453
Score = 37.4 bits (87), Expect = 0.020
Identities = 14/42 (33%), Positives = 18/42 (42%), Gaps = 5/42 (11%)
Query: 136 PDRDYDFIVIGGGSSGAVVANRLSEVPNWRVLLIEA----GG 173
P D ++G G SG A L + V +IEA GG
Sbjct: 2 PTLQRDVAIVGAGPSGLAAATALRKA-GLSVAVIEARDRVGG 42
Score = 31.2 bits (71), Expect = 1.4
Identities = 8/25 (32%), Positives = 11/25 (44%)
Query: 58 PDRDYDFIVIGGGSSGAVVANRLSE 82
P D ++G G SG A L +
Sbjct: 2 PTLQRDVAIVGAGPSGLAAATALRK 26
>3nix_A Flavoprotein/dehydrogenase; structural genomics, PSI-2, NES protein
structure initiative, northeast structural genomics
consortium; HET: FAD; 2.60A {Cytophaga hutchinsonii}
Length = 421
Score = 37.1 bits (86), Expect = 0.024
Identities = 10/34 (29%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Query: 139 DYDFIVIGGGSSGAVVANRLSEVPNWRVLLIEAG 172
D +VIG G +G V A+ +++ ++V ++E
Sbjct: 5 KVDVLVIGAGPAGTVAASLVNK-SGFKVKIVEKQ 37
>3uox_A Otemo; baeyer-villiger monooxygenase, oxidoreductase; HET: FAD;
1.96A {Pseudomonas putida} PDB: 3uov_A* 3uoy_A* 3uoz_A*
3up4_A* 3up5_A*
Length = 545
Score = 36.8 bits (86), Expect = 0.028
Identities = 15/43 (34%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
Query: 132 SRGFPDRDYDFIVIGGGSSGAVVANRLSEVPNWRVLLIEAGGD 174
S D +VIG G +G A +++ +VL IEAG D
Sbjct: 2 SNRAKSPALDAVVIGAGVTGIYQAFLINQ-AGMKVLGIEAGED 43
Score = 29.5 bits (67), Expect = 6.2
Identities = 8/31 (25%), Positives = 13/31 (41%)
Query: 54 SRGFPDRDYDFIVIGGGSSGAVVANRLSEMN 84
S D +VIG G +G A +++
Sbjct: 2 SNRAKSPALDAVVIGAGVTGIYQAFLINQAG 32
>3gwf_A Cyclohexanone monooxygenase; flavoprotein biocatalysis
baeyer-villiger oxidation green CH monooxygenase,
oxidoreductase; HET: FAD NAP; 2.20A {Rhodococcus SP}
PDB: 3gwd_A* 3ucl_A*
Length = 540
Score = 36.8 bits (86), Expect = 0.030
Identities = 7/39 (17%), Positives = 12/39 (30%)
Query: 136 PDRDYDFIVIGGGSSGAVVANRLSEVPNWRVLLIEAGGD 174
D +VIG G G ++L + +
Sbjct: 5 TTHTVDAVVIGAGFGGIYAVHKLHHELGLTTVGFDKADG 43
>1s3e_A Amine oxidase [flavin-containing] B; human monoamine oxidase,
inhibitor binding, rasagiline, enantioselectivity,
oxidoreductase; HET: FAD RHP; 1.60A {Homo sapiens} SCOP:
c.3.1.2 d.16.1.5 PDB: 1gos_A* 1oj9_A* 1ojb_A* 1ojc_A*
1ojd_A* 1s2q_A* 1s2y_A* 1oja_A* 1s3b_A* 2bk3_A* 2byb_A*
2c64_A* 2c65_A* 2c66_A* 2c67_A* 2c70_A* 2v5z_A* 2v60_A*
2v61_A* 2vrl_A* ...
Length = 520
Score = 36.4 bits (84), Expect = 0.046
Identities = 14/40 (35%), Positives = 20/40 (50%), Gaps = 5/40 (12%)
Query: 138 RDYDFIVIGGGSSGAVVANRLSEVPNWRVLLIEA----GG 173
D +V+GGG SG A L + V+++EA GG
Sbjct: 3 NKCDVVVVGGGISGMAAAKLLHDSG-LNVVVLEARDRVGG 41
Score = 30.2 bits (68), Expect = 3.0
Identities = 9/23 (39%), Positives = 12/23 (52%)
Query: 60 RDYDFIVIGGGSSGAVVANRLSE 82
D +V+GGG SG A L +
Sbjct: 3 NKCDVVVVGGGISGMAAAKLLHD 25
>3jsk_A Cypbp37 protein; octameric thiazole synthase, biosynthetic protein;
HET: AHZ; 2.70A {Neurospora crassa}
Length = 344
Score = 35.9 bits (82), Expect = 0.047
Identities = 13/35 (37%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
Query: 139 DYDFIVIGGGSSGAVVANRLSEV-PNWRVLLIEAG 172
+ D +++G GS G A LS + P+ R+ ++EAG
Sbjct: 79 ETDIVIVGAGSCGLSAAYVLSTLRPDLRITIVEAG 113
Score = 29.7 bits (66), Expect = 4.6
Identities = 8/24 (33%), Positives = 13/24 (54%)
Query: 61 DYDFIVIGGGSSGAVVANRLSEMN 84
+ D +++G GS G A LS +
Sbjct: 79 ETDIVIVGAGSCGLSAAYVLSTLR 102
>2uzz_A N-methyl-L-tryptophan oxidase; N-methyltryptophan oxidase (MTOX),
oxidative demethylation of N-methyl-L-tryptophan, FAD,
flavoenzyme; HET: FAD; 3.2A {Escherichia coli}
Length = 372
Score = 35.8 bits (83), Expect = 0.053
Identities = 12/34 (35%), Positives = 16/34 (47%), Gaps = 1/34 (2%)
Query: 139 DYDFIVIGGGSSGAVVANRLSEVPNWRVLLIEAG 172
YD I+IG GS GA + VL+ +A
Sbjct: 2 KYDLIIIGSGSVGAAAGYYATR-AGLNVLMTDAH 34
Score = 29.6 bits (67), Expect = 4.9
Identities = 13/49 (26%), Positives = 16/49 (32%), Gaps = 8/49 (16%)
Query: 61 DYDFIVIGGGSSGAVVANRLSEMNTCNCPVT-----QPGPTLASTCGGS 104
YD I+IG GS GA + V P S G +
Sbjct: 2 KYDLIIIGSGSVGAAAGYYATRA---GLNVLMTDAHMPPHQHGSHHGDT 47
>3e1t_A Halogenase; flavoprotein; HET: FAD; 2.05A {Chondromyces crocatus}
Length = 512
Score = 35.7 bits (82), Expect = 0.060
Identities = 14/33 (42%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
Query: 140 YDFIVIGGGSSGAVVANRLSEVPNWRVLLIEAG 172
+D IVIGGG G+ +A+ ++ RVLL+E
Sbjct: 8 FDLIVIGGGPGGSTLASFVAM-RGHRVLLLERE 39
>3k7m_X 6-hydroxy-L-nicotine oxidase; enantiomeric substrates,
flavoenzymes, nicotine degradation, oxidoreductase; HET:
FAD GP7; 1.95A {Arthrobacter nicotinovorans} PDB:
3k7q_X* 3ng7_X* 3ngc_X* 3nh3_X* 3nho_X* 3nk0_X* 3nk1_X*
3nk2_X* 3nn0_X* 3nn6_X* 3k7t_A*
Length = 431
Score = 35.6 bits (82), Expect = 0.061
Identities = 17/38 (44%), Positives = 21/38 (55%), Gaps = 5/38 (13%)
Query: 140 YDFIVIGGGSSGAVVANRLSEVPNWRVLLIEA----GG 173
YD IV+GGG SG A L+ +VLL+E GG
Sbjct: 2 YDAIVVGGGFSGLKAARDLTNA-GKKVLLLEGGERLGG 38
Score = 29.8 bits (67), Expect = 3.8
Identities = 11/21 (52%), Positives = 13/21 (61%)
Query: 62 YDFIVIGGGSSGAVVANRLSE 82
YD IV+GGG SG A L+
Sbjct: 2 YDAIVVGGGFSGLKAARDLTN 22
>1fcd_A Flavocytochrome C sulfide dehydrogenase (flavin- binding subunit);
electron transport(flavocytochrome); HET: FAD HEM; 2.53A
{Allochromatium vinosum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1
Length = 401
Score = 35.5 bits (82), Expect = 0.067
Identities = 12/30 (40%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
Query: 143 IVIGGGSSGAVVANRLSE-VPNWRVLLIEA 171
+V+GGG+ GA A + P+ V LIE
Sbjct: 6 VVVGGGTGGATAAKYIKLADPSIEVTLIEP 35
Score = 29.7 bits (67), Expect = 4.7
Identities = 7/16 (43%), Positives = 11/16 (68%)
Query: 65 IVIGGGSSGAVVANRL 80
+V+GGG+ GA A +
Sbjct: 6 VVVGGGTGGATAAKYI 21
>3i3l_A Alkylhalidase CMLS; flavin-dependent halogenase, chloramphenicol
biosynthesis, halogenation reaction, structural
genomics; HET: FAD; 2.20A {Streptomyces venezuelae}
Length = 591
Score = 35.3 bits (81), Expect = 0.080
Identities = 11/44 (25%), Positives = 17/44 (38%), Gaps = 1/44 (2%)
Query: 129 RPLSRGFPDRDYDFIVIGGGSSGAVVANRLSEVPNWRVLLIEAG 172
+ RG +IGGG +G+V L + V + E
Sbjct: 13 GLVPRGSHMTRSKVAIIGGGPAGSVAGLTLHK-LGHDVTIYERS 55
>1zk7_A HGII, reductase, mercuric reductase; mercuric ION reductase,
oxidoreductase; HET: FAD; 1.60A {Pseudomonas aeruginosa}
PDB: 1zx9_A*
Length = 467
Score = 35.2 bits (82), Expect = 0.082
Identities = 11/36 (30%), Positives = 15/36 (41%), Gaps = 1/36 (2%)
Query: 137 DRDYDFIVIGGGSSGAVVANRLSEVPNWRVLLIEAG 172
+ VIG G + A + E +V LIE G
Sbjct: 2 EPPVQVAVIGSGGAAMAAALKAVEQ-GAQVTLIERG 36
Score = 30.2 bits (69), Expect = 3.7
Identities = 6/25 (24%), Positives = 9/25 (36%)
Query: 59 DRDYDFIVIGGGSSGAVVANRLSEM 83
+ VIG G + A + E
Sbjct: 2 EPPVQVAVIGSGGAAMAAALKAVEQ 26
>1rsg_A FMS1 protein; FAD binding motif, oxidoreductase; HET: FAD; 1.90A
{Saccharomyces cerevisiae} PDB: 1z6l_A* 3bi2_A* 3bi4_A*
3bi5_A* 3bnm_B* 3bnu_B* 3cn8_B* 3cnd_B* 3cnp_B* 3cns_A*
3cnt_B* 1yy5_A* 1xpq_A*
Length = 516
Score = 34.8 bits (79), Expect = 0.14
Identities = 12/40 (30%), Positives = 18/40 (45%), Gaps = 4/40 (10%)
Query: 138 RDYDFIVIGGGSSGAVVANRLSEVPNWRVLLIEA----GG 173
I+IG G +G A+ L + L++EA GG
Sbjct: 7 AKKKVIIIGAGIAGLKAASTLHQNGIQDCLVLEARDRVGG 46
Score = 29.4 bits (65), Expect = 6.1
Identities = 9/31 (29%), Positives = 14/31 (45%)
Query: 60 RDYDFIVIGGGSSGAVVANRLSEMNTCNCPV 90
I+IG G +G A+ L + +C V
Sbjct: 7 AKKKVIIIGAGIAGLKAASTLHQNGIQDCLV 37
>4ap3_A Steroid monooxygenase; oxidoreductase, baeyer-villiger; HET: FAD
NAP; 2.39A {Rhodococcus rhodochrous} PDB: 4aox_A*
4aos_A* 4ap1_A*
Length = 549
Score = 34.5 bits (80), Expect = 0.15
Identities = 10/39 (25%), Positives = 14/39 (35%), Gaps = 1/39 (2%)
Query: 136 PDRDYDFIVIGGGSSGAVVANRLSEVPNWRVLLIEAGGD 174
YD +V+G G +G +R V EA
Sbjct: 18 GTTSYDVVVVGAGIAGLYAIHRFRSQ-GLTVRAFEAASG 55
>2gag_B Heterotetrameric sarcosine oxidase beta-subunit; flavoenzyme,
electron transfer, folate-ME enzyme, oxidoreductase;
HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia}
PDB: 2gah_B* 1x31_B* 1vrq_B* 3ad7_B* 3ad8_B* 3ad9_B*
3ada_B*
Length = 405
Score = 34.5 bits (80), Expect = 0.16
Identities = 13/38 (34%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
Query: 136 PDRDYDFIVIGGGSSGAVVANRLSEVPNWR-VLLIEAG 172
P + YD I++GGG G A L++ V ++E G
Sbjct: 18 PKKSYDAIIVGGGGHGLATAYFLAKNHGITNVAVLEKG 55
>1ryi_A Glycine oxidase; flavoprotein, protein-inhibitor complex,
oxidoreductase; HET: FAD; 1.80A {Bacillus subtilis}
SCOP: c.3.1.2 d.16.1.3 PDB: 3if9_A* 1ng4_A* 1ng3_A*
Length = 382
Score = 34.1 bits (79), Expect = 0.17
Identities = 14/37 (37%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
Query: 136 PDRDYDFIVIGGGSSGAVVANRLSEVPNWRVLLIEAG 172
R Y+ +VIGGG G+ +A L++ N L E+G
Sbjct: 14 MKRHYEAVVIGGGIIGSAIAYYLAKE-NKNTALFESG 49
Score = 29.1 bits (66), Expect = 6.4
Identities = 10/25 (40%), Positives = 16/25 (64%)
Query: 58 PDRDYDFIVIGGGSSGAVVANRLSE 82
R Y+ +VIGGG G+ +A L++
Sbjct: 14 MKRHYEAVVIGGGIIGSAIAYYLAK 38
>2qcu_A Aerobic glycerol-3-phosphate dehydrogenase; glycerol-3-phoshate
dehydrogenase, oxidoreductase; HET: BOG FAD TAM; 1.75A
{Escherichia coli} PDB: 2r45_A* 2r46_A* 2r4e_A* 2r4j_A*
Length = 501
Score = 34.5 bits (80), Expect = 0.17
Identities = 15/38 (39%), Positives = 19/38 (50%), Gaps = 9/38 (23%)
Query: 139 DYDFIVIGGGSSGAVVA----NRLSEVPNWRVLLIEAG 172
D IVIGGG +GA +A R VL++EA
Sbjct: 3 TKDLIVIGGGINGAGIAADAAGR-----GLSVLMLEAQ 35
Score = 31.4 bits (72), Expect = 1.3
Identities = 10/17 (58%), Positives = 12/17 (70%)
Query: 61 DYDFIVIGGGSSGAVVA 77
D IVIGGG +GA +A
Sbjct: 3 TKDLIVIGGGINGAGIA 19
>2oln_A NIKD protein; flavoprotein, rossmann fold, oxidoreductase; HET:
FAD; 1.15A {Streptomyces tendae} PDB: 2olo_A* 3hzl_A*
2q6u_A*
Length = 397
Score = 34.4 bits (79), Expect = 0.18
Identities = 13/37 (35%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
Query: 137 DRDYDFIVIGGGSSGAVVANRLSEVPNWRVLLIEAGG 173
YD +V+GGG G A +++E RVL++E
Sbjct: 2 TESYDVVVVGGGPVGLATAWQVAE-RGHRVLVLERHT 37
Score = 29.7 bits (67), Expect = 4.9
Identities = 12/51 (23%), Positives = 17/51 (33%), Gaps = 8/51 (15%)
Query: 59 DRDYDFIVIGGGSSGAVVANRLSEMNTCNCPVT-----QPGPTLASTCGGS 104
YD +V+GGG G A +++E V T G
Sbjct: 2 TESYDVVVVGGGPVGLATAWQVAERGH---RVLVLERHTFFNENGGTSGAE 49
>2z3y_A Lysine-specific histone demethylase 1; chromatin, nucleosome,
transcription, LSD1, alternative splicing, chromatin
regulator, coiled coil; HET: F2N; 2.25A {Homo sapiens}
SCOP: a.4.1.18 c.3.1.2 d.16.1.5 PDB: 2ejr_A* 2z5u_A*
3abt_A* 3abu_A* 2y48_A* 2v1d_A* 2h94_A* 2iw5_A* 2uxn_A*
2uxx_A* 2hko_A* 2dw4_A* 2x0l_A* 2l3d_A
Length = 662
Score = 34.5 bits (78), Expect = 0.18
Identities = 12/56 (21%), Positives = 21/56 (37%), Gaps = 1/56 (1%)
Query: 116 FIRSQCDLEDPCNRPLSRGFPDRDYDFIVIGGGSSGAVVANRLSEVPNWRVLLIEA 171
++ + + + + I+IG G SG A +L V L+EA
Sbjct: 84 YLERHGLINFGIYKRIKPLPTKKTGKVIIIGSGVSGLAAARQLQSF-GMDVTLLEA 138
Score = 30.2 bits (67), Expect = 3.4
Identities = 8/45 (17%), Positives = 16/45 (35%)
Query: 38 FIRSQCDLEDPCNRPLSRGFPDRDYDFIVIGGGSSGAVVANRLSE 82
++ + + + + I+IG G SG A +L
Sbjct: 84 YLERHGLINFGIYKRIKPLPTKKTGKVIIIGSGVSGLAAARQLQS 128
>3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB;
TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus
rimd 2210633}
Length = 183
Score = 33.2 bits (76), Expect = 0.19
Identities = 11/66 (16%), Positives = 21/66 (31%), Gaps = 7/66 (10%)
Query: 106 YMLFMGLLEVFIRSQCDLEDPCNRPLSRGFPDRDYDFIVIGGGSSGAVVANRLSEVPNWR 165
Y L+ + + D + ++ G +++G G G + L
Sbjct: 13 YQHSGKWLQETAAEKLNQRD---QLINPG----HAQVLILGMGRIGTGAYDELRARYGKI 65
Query: 166 VLLIEA 171
L IE
Sbjct: 66 SLGIEI 71
Score = 29.0 bits (65), Expect = 4.4
Identities = 8/57 (14%), Positives = 18/57 (31%), Gaps = 7/57 (12%)
Query: 28 YMLFMGLLEVFIRSQCDLEDPCNRPLSRGFPDRDYDFIVIGGGSSGAVVANRLSEMN 84
Y L+ + + D + ++ G +++G G G + L
Sbjct: 13 YQHSGKWLQETAAEKLNQRD---QLINPG----HAQVLILGMGRIGTGAYDELRARY 62
>3ka7_A Oxidoreductase; structural genomics, PSI-2, protein structure
initiative, northeast structural genomics consortium,
NESG; HET: FAD; 1.80A {Methanosarcina mazei}
Length = 425
Score = 33.9 bits (78), Expect = 0.22
Identities = 15/106 (14%), Positives = 31/106 (29%), Gaps = 14/106 (13%)
Query: 510 LRPIISRNNLHILLNTTVTRVIVDPLTKAAIGVEFLTNGRLERLQAKNEVIVCAGAVDSP 569
L +IS N I V++++++ A G+ + + A VI G +
Sbjct: 202 LETVISANGGKIHTGQEVSKILIEN--GKAAGI--IADD--RIHDADL-VISNLGHAATA 254
Query: 570 RILL--LSGIGPREELRRLNIAPIH-----DLPGVGKNLHNHVAHF 608
+ LS + + L + +
Sbjct: 255 VLCSEALSKEADAAYFKMVGTLQPSAGIKICLAADEPLVGHTGVLL 300
>2gf3_A MSOX, monomeric sarcosine oxidase; flavoprotein oxidase, inhibitor
2-furoic acid, oxidoreductas; HET: FAD; 1.30A {Bacillus
SP} SCOP: c.3.1.2 d.16.1.3 PDB: 1el7_A* 1el8_A* 1el9_A*
1eli_A* 1l9e_A* 2a89_A* 2gb0_A* 1el5_A* 3qse_A* 3qsm_A*
3qss_A* 3bhk_A* 3bhf_A* 3m12_A* 3m13_A* 3m0o_A* 1l9c_A*
1l9d_A* 1zov_A*
Length = 389
Score = 33.8 bits (78), Expect = 0.23
Identities = 11/34 (32%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Query: 140 YDFIVIGGGSSGAVVANRLSEVPNWRVLLIEAGG 173
+D IV+G GS G +L++ + LL++A
Sbjct: 4 FDVIVVGAGSMGMAAGYQLAK-QGVKTLLVDAFD 36
>2vvm_A Monoamine oxidase N; FAD, peroxisome, flavoprotein, oxidoreductase,
enantioselectivity, directed evolution variant; HET:
FAD; 1.85A {Aspergillus niger} PDB: 2vvl_A* 2vvl_G*
Length = 495
Score = 33.8 bits (77), Expect = 0.24
Identities = 16/49 (32%), Positives = 22/49 (44%), Gaps = 5/49 (10%)
Query: 129 RPLSRGFPDRDYDFIVIGGGSSGAVVANRLSEVPNWRVLLIEA----GG 173
+ D +D IVIGGG G L+ ++ LL+EA GG
Sbjct: 29 TNIEDTDKDGPWDVIVIGGGYCGLTATRDLTV-AGFKTLLLEARDRIGG 76
Score = 30.7 bits (69), Expect = 2.6
Identities = 10/32 (31%), Positives = 13/32 (40%)
Query: 51 RPLSRGFPDRDYDFIVIGGGSSGAVVANRLSE 82
+ D +D IVIGGG G L+
Sbjct: 29 TNIEDTDKDGPWDVIVIGGGYCGLTATRDLTV 60
>1yvv_A Amine oxidase, flavin-containing; oxidoreductase, PSR10, Q888A4,
X-RAY, structure, PSI, protein structure initiative;
HET: FAD; 2.50A {Pseudomonas syringae} PDB: 3kkj_A*
Length = 336
Score = 33.5 bits (75), Expect = 0.26
Identities = 8/32 (25%), Positives = 13/32 (40%), Gaps = 1/32 (3%)
Query: 141 DFIVIGGGSSGAVVANRLSEVPNWRVLLIEAG 172
+IG G +G A L+ +V L +
Sbjct: 4 PIAIIGTGIAGLSAAQALTAA-GHQVHLFDKS 34
Score = 28.9 bits (63), Expect = 8.0
Identities = 6/20 (30%), Positives = 9/20 (45%)
Query: 63 DFIVIGGGSSGAVVANRLSE 82
+IG G +G A L+
Sbjct: 4 PIAIIGTGIAGLSAAQALTA 23
>1qo8_A Flavocytochrome C3 fumarate reductase; oxidoreductase; HET: HEM
FAD; 2.15A {Shewanella frigidimarina} SCOP: a.138.1.3
c.3.1.4 d.168.1.1
Length = 566
Score = 33.5 bits (77), Expect = 0.29
Identities = 15/76 (19%), Positives = 33/76 (43%), Gaps = 11/76 (14%)
Query: 136 PDRDYDFIVIGGGSSGAVVANRLSEVPNWRVLLIE----AGGDEPTGTQIPSMFLNFLGS 191
P +V+G GS+G + + V+L++ +GG+ + I + +N +G+
Sbjct: 118 PSETTQVLVVGAGSAGFNASLAAKKA-GANVILVDKAPFSGGN----SMISAGGMNAVGT 172
Query: 192 SI--DYGYKTEPEDMA 205
+G + + E
Sbjct: 173 KQQTAHGVEDKVEWFI 188
Score = 33.5 bits (77), Expect = 0.33
Identities = 14/95 (14%), Positives = 31/95 (32%), Gaps = 7/95 (7%)
Query: 473 MELGMPVRDLNGVSHTGFMIAQTTTRNGSRLSTSKAFLRPI---ISRNNLHILLNTTVTR 529
LG L+ + +G T R S+ + + + LN+ V +
Sbjct: 219 ESLGAN---LDDLKRSGGARVDRTHRPHGGKSSGPEIIDTLRKAAKEQGIDTRLNSRVVK 275
Query: 530 VIVDPLTKAAIGVEFLTNGRLERLQAKNEVIVCAG 564
++V+ + +G + V++ G
Sbjct: 276 LVVND-DHSVVGAVVHGKHTGYYMIGAKSVVLATG 309
Score = 30.0 bits (68), Expect = 4.3
Identities = 6/25 (24%), Positives = 11/25 (44%)
Query: 58 PDRDYDFIVIGGGSSGAVVANRLSE 82
P +V+G GS+G + +
Sbjct: 118 PSETTQVLVVGAGSAGFNASLAAKK 142
>1sez_A Protoporphyrinogen oxidase, mitochondrial; FAD-binding,
para-hydroxy-benzoate-hydroxylase fold (PHBH- fold),
monotopic membrane-binding domain; HET: FAD OMN TON;
2.90A {Nicotiana tabacum} SCOP: c.3.1.2 d.16.1.5
Length = 504
Score = 33.6 bits (76), Expect = 0.32
Identities = 13/42 (30%), Positives = 15/42 (35%), Gaps = 5/42 (11%)
Query: 136 PDRDYDFIVIGGGSSGAVVANRLSEVPNWRVLLIEA----GG 173
VIG G SG A +L V + EA GG
Sbjct: 10 HSSAKRVAVIGAGVSGLAAAYKLKI-HGLNVTVFEAEGKAGG 50
>3p1w_A Rabgdi protein; GDI RAB, malaria, structural genomics consortium,
SGC, trans PF10_0345, protein transport; 1.85A
{Plasmodium falciparum 3D7}
Length = 475
Score = 33.3 bits (75), Expect = 0.32
Identities = 14/77 (18%), Positives = 27/77 (35%), Gaps = 5/77 (6%)
Query: 135 FPDRDYDFIVIGGGSSGAVVANRLSEVPNWRVLLIEA----GGDEPTGTQIPSMFLNFLG 190
F YD I++G G +++ LS ++L+++ GG+ +
Sbjct: 16 FQGEHYDVIILGTGLKECILSGLLSHY-GKKILVLDRNPYYGGETASLNLTNLYNTFKPK 74
Query: 191 SSIDYGYKTEPEDMACL 207
+I Y L
Sbjct: 75 ENIPSKYGENRHWNVDL 91
Score = 30.3 bits (67), Expect = 3.3
Identities = 8/26 (30%), Positives = 13/26 (50%)
Query: 57 FPDRDYDFIVIGGGSSGAVVANRLSE 82
F YD I++G G +++ LS
Sbjct: 16 FQGEHYDVIILGTGLKECILSGLLSH 41
>3fbs_A Oxidoreductase; structural genomics, PSI2, MCSG, protein STR
initiative, midwest center for structural genomics; HET:
FAD; 2.15A {Agrobacterium tumefaciens}
Length = 297
Score = 33.3 bits (77), Expect = 0.33
Identities = 16/55 (29%), Positives = 23/55 (41%), Gaps = 10/55 (18%)
Query: 139 DYDFIVIGGGSSG---AVVANRLSEVPNWRVLLIEAGGDEPTGTQIPSMFLNFLG 190
+D I+IGG +G A+ R +LL++AG E FLG
Sbjct: 2 KFDVIIIGGSYAGLSAALQLGRA----RKNILLVDAG--ERRNRFASHSH-GFLG 49
>2jae_A L-amino acid oxidase; oxidoreductase, dimerisation mode, hydride
transfer mechanism, GR2-family, flavoenzyme, FAD
containing; HET: FAD; 1.25A {Rhodococcus opacus} PDB:
2jb1_A* 2jb2_A* 2jb3_A*
Length = 489
Score = 33.3 bits (76), Expect = 0.36
Identities = 12/42 (28%), Positives = 21/42 (50%), Gaps = 5/42 (11%)
Query: 136 PDRDYDFIVIGGGSSGAVVANRLSEVPNWRVLLIEA----GG 173
+ +V+GGG +G A L + ++V ++EA GG
Sbjct: 8 VKGSHSVVVLGGGPAGLCSAFELQKA-GYKVTVLEARTRPGG 48
>2xag_A Lysine-specific histone demethylase 1; amine oxidase, chromatin
regulator, histone inhibitor binding, methylation,
nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A
{Homo sapiens} PDB: 2xaf_A* 2xah_A* 2xaj_A* 2xaq_A*
2xas_A* 2com_A
Length = 852
Score = 33.4 bits (75), Expect = 0.40
Identities = 12/45 (26%), Positives = 18/45 (40%), Gaps = 1/45 (2%)
Query: 127 CNRPLSRGFPDRDYDFIVIGGGSSGAVVANRLSEVPNWRVLLIEA 171
+ + + I+IG G SG A +L V L+EA
Sbjct: 266 IYKRIKPLPTKKTGKVIIIGSGVSGLAAARQLQSF-GMDVTLLEA 309
Score = 29.2 bits (64), Expect = 8.1
Identities = 8/34 (23%), Positives = 13/34 (38%)
Query: 49 CNRPLSRGFPDRDYDFIVIGGGSSGAVVANRLSE 82
+ + + I+IG G SG A +L
Sbjct: 266 IYKRIKPLPTKKTGKVIIIGSGVSGLAAARQLQS 299
>4fk1_A Putative thioredoxin reductase; structural genomics, niaid,
national institute of allergy AN infectious diseases;
HET: MSE FAD; 2.40A {Bacillus anthracis} PDB: 4fk1_C*
Length = 304
Score = 32.9 bits (76), Expect = 0.40
Identities = 10/54 (18%), Positives = 18/54 (33%), Gaps = 10/54 (18%)
Query: 140 YDFIVIGGGSSG---AVVANRLSEVPNWRVLLIEAGGDEPTGTQIPSMFLNFLG 190
D VIG G +G ++V R ++ L + + F+
Sbjct: 7 IDCAVIGAGPAGLNASLVLGRA----RKQIALFDNN--TNRNRVTQNSH-GFIT 53
Score = 30.2 bits (69), Expect = 2.6
Identities = 13/49 (26%), Positives = 22/49 (44%), Gaps = 3/49 (6%)
Query: 134 GFPDRDYDFIVIGGGSSGAVVANRLSEVPNW-RVLLIEAGGDEPTGTQI 181
G+ +D I+I + +L V NW L+I G+E + T +
Sbjct: 141 GWELKDQPLIIISENEDHTLHMTKL--VYNWSTDLVIATNGNELSQTIM 187
>1mo9_A ORF3; nucleotide binding motifs, nucleotide binding domain, oxidor;
HET: FAD KPC; 1.65A {Xanthobacter autotrophicus} SCOP:
c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1mok_A* 2c3c_A* 2c3d_A*
3q6j_A*
Length = 523
Score = 33.0 bits (76), Expect = 0.41
Identities = 12/36 (33%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Query: 138 RDYDFIVIGGGSSGAVVANRLSEVPNWRVLLIEAGG 173
R+YD I IGGG++G + L + R L+++
Sbjct: 42 REYDAIFIGGGAAGRFGSAYLRAM-GGRQLIVDRWP 76
Score = 33.0 bits (76), Expect = 0.51
Identities = 11/24 (45%), Positives = 15/24 (62%)
Query: 60 RDYDFIVIGGGSSGAVVANRLSEM 83
R+YD I IGGG++G + L M
Sbjct: 42 REYDAIFIGGGAAGRFGSAYLRAM 65
>1d5t_A Guanine nucleotide dissociation inhibitor; ultra-high resolution,
hydrolase inhibitor; 1.04A {Bos taurus} SCOP: c.3.1.3
d.16.1.6 PDB: 1lv0_A* 1gnd_A
Length = 433
Score = 32.9 bits (74), Expect = 0.41
Identities = 14/53 (26%), Positives = 29/53 (54%), Gaps = 5/53 (9%)
Query: 137 DRDYDFIVIGGGSSGAVVANRLSEVPNWRVLLIEA----GGDEPTGTQIPSMF 185
D +YD IV+G G + +++ +S V +VL ++ GG+ + T + ++
Sbjct: 4 DEEYDVIVLGTGLTECILSGIMS-VNGKKVLHMDRNPYYGGESSSITPLEELY 55
Score = 30.2 bits (67), Expect = 3.2
Identities = 8/23 (34%), Positives = 15/23 (65%)
Query: 59 DRDYDFIVIGGGSSGAVVANRLS 81
D +YD IV+G G + +++ +S
Sbjct: 4 DEEYDVIVLGTGLTECILSGIMS 26
>2i0z_A NAD(FAD)-utilizing dehydrogenases; structural genomics, PSI-2,
protein structure initiative, midwest center for
structural genomics, MCSG; HET: FAD; 1.84A {Bacillus
cereus} SCOP: c.3.1.8 e.74.1.1
Length = 447
Score = 32.9 bits (76), Expect = 0.45
Identities = 16/37 (43%), Positives = 19/37 (51%), Gaps = 7/37 (18%)
Query: 139 DYDFIVIGGGSSG---AVVANRLSEVPNWRVLLIEAG 172
YD IVIGGG SG A+ A VLL++ G
Sbjct: 26 HYDVIVIGGGPSGLMAAIGAAE----EGANVLLLDKG 58
>1d4d_A Flavocytochrome C fumarate reductase; oxidoreductase; HET: HEM FAD;
2.50A {Shewanella oneidensis} SCOP: a.138.1.3 c.3.1.4
d.168.1.1 PDB: 1d4e_A* 1d4c_A*
Length = 572
Score = 33.2 bits (76), Expect = 0.45
Identities = 16/95 (16%), Positives = 29/95 (30%), Gaps = 9/95 (9%)
Query: 474 ELGMPVRDLNGVSHTGFMIAQTTTRNGSRLSTSKAFLRP---IISRNNLHILLNTTVTRV 530
+G + V G + R + + I LN+ V R+
Sbjct: 225 SMGAD---MTDVGRMGGASVNRSHRPTGGAGVGAHVAQVLWDNAVKRGTDIRLNSRVVRI 281
Query: 531 IVDPLTKAAIGVEFLT-NGRLERLQAKNEVIVCAG 564
+ D + GV ++A V++ AG
Sbjct: 282 LEDA-SGKVTGVLVKGEYTGYYVIKADA-VVIAAG 314
Score = 29.7 bits (67), Expect = 4.5
Identities = 9/34 (26%), Positives = 16/34 (47%), Gaps = 1/34 (2%)
Query: 137 DRDYDFIVIGGGSSGAVVANRLSEVPNWRVLLIE 170
D ++IG G +G A + +V+L+E
Sbjct: 124 KETTDVVIIGSGGAGLAAAVSARD-AGAKVILLE 156
>3da1_A Glycerol-3-phosphate dehydrogenase; NESG BHR167 Q9KDW6 X-RAY,
structural genomics, PSI-2, protein structure
initiative; HET: FAD; 2.70A {Bacillus halodurans}
Length = 561
Score = 33.0 bits (76), Expect = 0.46
Identities = 12/40 (30%), Positives = 19/40 (47%), Gaps = 9/40 (22%)
Query: 137 DRDYDFIVIGGGSSGAVVA----NRLSEVPNWRVLLIEAG 172
++ D +VIGGG +GA +A R + L+E
Sbjct: 16 EKQLDLLVIGGGITGAGIALDAQVR-----GIQTGLVEMN 50
Score = 30.4 bits (69), Expect = 3.3
Identities = 9/19 (47%), Positives = 14/19 (73%)
Query: 59 DRDYDFIVIGGGSSGAVVA 77
++ D +VIGGG +GA +A
Sbjct: 16 EKQLDLLVIGGGITGAGIA 34
>3dje_A Fructosyl amine: oxygen oxidoreductase; fructosyl-amino acid,
amadoriase, deglycation, fructosamine oxidase; HET: MSE
FAD FSA EPE; 1.60A {Aspergillus fumigatus} PDB: 3djd_A*
Length = 438
Score = 32.9 bits (75), Expect = 0.48
Identities = 6/36 (16%), Positives = 15/36 (41%)
Query: 137 DRDYDFIVIGGGSSGAVVANRLSEVPNWRVLLIEAG 172
+ +++G G+ G A L+ V +++
Sbjct: 4 TKSSSLLIVGAGTWGTSTALHLARRGYTNVTVLDPY 39
>3nyc_A D-arginine dehydrogenase; FAD, imino-arginine, oxidoreductas; HET:
FAD IAR; 1.06A {Pseudomonas aeruginosa} PDB: 3nye_A*
3nyf_A* 3sm8_A*
Length = 381
Score = 32.6 bits (75), Expect = 0.52
Identities = 12/35 (34%), Positives = 19/35 (54%), Gaps = 2/35 (5%)
Query: 140 YDFIVIGGGSSGAVVANRLSEVPNWRVLLIEAGGD 174
D++VIG G +GA LS + RV+++E
Sbjct: 10 ADYLVIGAGIAGASTGYWLSA--HGRVVVLEREAQ 42
Score = 31.4 bits (72), Expect = 1.2
Identities = 9/22 (40%), Positives = 12/22 (54%)
Query: 62 YDFIVIGGGSSGAVVANRLSEM 83
D++VIG G +GA LS
Sbjct: 10 ADYLVIGAGIAGASTGYWLSAH 31
>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann,
PSI, M structural genomics; 1.70A {Archaeoglobus
fulgidus}
Length = 141
Score = 31.5 bits (72), Expect = 0.54
Identities = 7/25 (28%), Positives = 13/25 (52%)
Query: 60 RDYDFIVIGGGSSGAVVANRLSEMN 84
Y++IVIG ++G + L+
Sbjct: 5 GRYEYIVIGSEAAGVGLVRELTAAG 29
Score = 31.1 bits (71), Expect = 0.60
Identities = 9/33 (27%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
Query: 138 RDYDFIVIGGGSSGAVVANRLSEVPNWRVLLIE 170
Y++IVIG ++G + L+ +VL ++
Sbjct: 5 GRYEYIVIGSEAAGVGLVRELTAA-GKKVLAVD 36
>2aqj_A Tryptophan halogenase, pRNA; flavin-dependent halogenase, helical
bundle, sandwiched sheets, structural genomics; HET: TRP
FAD; 1.80A {Pseudomonas fluorescens} PDB: 2apg_A*
2ar8_A* 2ard_A* 2jkc_A*
Length = 538
Score = 32.7 bits (73), Expect = 0.54
Identities = 15/55 (27%), Positives = 26/55 (47%), Gaps = 8/55 (14%)
Query: 143 IVIGGGSSGAVVANRLSEV--PNWRVLLIE------AGGDEPTGTQIPSMFLNFL 189
+++GGG++G + A+ L + LIE G E T + +F +FL
Sbjct: 9 VIVGGGTAGWMAASYLVRALQQQANITLIESAAIPRIGVGEATIPSLQKVFFDFL 63
>1y0p_A Fumarate reductase flavoprotein subunit; flavocytochrome,
mesaconate, oxidoreductase; HET: HEM FAD; 1.50A
{Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4
d.168.1.1 PDB: 1qjd_A* 2b7s_A* 1jry_A* 2b7r_A* 1ksu_A*
1jrz_A* 1jrx_A* 1m64_A* 1p2h_A* 1p2e_A* 1kss_A* 1e39_A*
1q9i_A* 1lj1_A*
Length = 571
Score = 32.7 bits (75), Expect = 0.60
Identities = 11/35 (31%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
Query: 136 PDRDYDFIVIGGGSSGAVVANRLSEVPNWRVLLIE 170
P D +V+G G +G A ++ +V+LIE
Sbjct: 123 PHDTVDVVVVGSGGAGFSAAISATDS-GAKVILIE 156
Score = 32.4 bits (74), Expect = 0.81
Identities = 15/95 (15%), Positives = 28/95 (29%), Gaps = 9/95 (9%)
Query: 474 ELGMPVRDLNGVSHTGFMIAQTTTRNGSRLSTSKAFLRPI---ISRNNLHILLNTTVTRV 530
+G L V G R ++ + + N+ + +NT V
Sbjct: 225 AMGAD---LTDVGMMGGASVNRAHRPTGGAGVGAHVVQVLYDNAVKRNIDLRMNTRGIEV 281
Query: 531 IVDPLTKAAIGVEFLT-NGRLERLQAKNEVIVCAG 564
+ D G+ ++A VI+ G
Sbjct: 282 LKDD-KGTVKGILVKGMYKGYYWVKADA-VILATG 314
Score = 30.8 bits (70), Expect = 2.0
Identities = 7/25 (28%), Positives = 12/25 (48%)
Query: 58 PDRDYDFIVIGGGSSGAVVANRLSE 82
P D +V+G G +G A ++
Sbjct: 123 PHDTVDVVVVGSGGAGFSAAISATD 147
>2rgh_A Alpha-glycerophosphate oxidase; flavoprotein oxidase,
oxidoreductase; HET: FAD; 2.30A {Streptococcus SP} PDB:
2rgo_A*
Length = 571
Score = 32.7 bits (75), Expect = 0.61
Identities = 12/40 (30%), Positives = 17/40 (42%), Gaps = 9/40 (22%)
Query: 137 DRDYDFIVIGGGSSGAVVA----NRLSEVPNWRVLLIEAG 172
+ D ++IGGG +GA VA + LIE
Sbjct: 30 QEELDLLIIGGGITGAGVAVQAAAS-----GIKTGLIEMQ 64
Score = 30.0 bits (68), Expect = 4.1
Identities = 9/19 (47%), Positives = 13/19 (68%)
Query: 59 DRDYDFIVIGGGSSGAVVA 77
+ D ++IGGG +GA VA
Sbjct: 30 QEELDLLIIGGGITGAGVA 48
>3lov_A Protoporphyrinogen oxidase; structural genomics, JO center for
structural genomics, JCSG, protein structure INI PSI-2;
HET: FAD; 2.06A {Exiguobacterium sibiricum}
Length = 475
Score = 32.3 bits (73), Expect = 0.69
Identities = 11/39 (28%), Positives = 18/39 (46%), Gaps = 5/39 (12%)
Query: 140 YDFIVIGGGSSGAVVANRLS-EVPNWRVLLIEA----GG 173
+++GGG +G A P+ + L+EA GG
Sbjct: 5 KRLVIVGGGITGLAAAYYAERAFPDLNITLLEAGERLGG 43
>2e4g_A Tryptophan halogenase; flavin-binding, rebeccamycin biosynthesis,
biosynthetic protein, flavoprotein; HET: TRP; 2.08A
{Lechevalieria aerocolonigenes} PDB: 2o9z_A 2oa1_A*
2oal_A* 2oam_A
Length = 550
Score = 32.4 bits (72), Expect = 0.70
Identities = 12/55 (21%), Positives = 26/55 (47%), Gaps = 8/55 (14%)
Query: 143 IVIGGGSSGAVVANRLSEV--PNWRVLLIEAGGDEPTGT------QIPSMFLNFL 189
+++GGG++G + A+ L + + L++A G + + F +FL
Sbjct: 29 LIVGGGTAGWMAASYLGKALQGTADITLLQAPDIPTLGVGEATIPNLQTAFFDFL 83
>1jnr_A Adenylylsulfate reductase; oxidoreductase; HET: FAD; 1.60A
{Archaeoglobus fulgidus dsm 4304} SCOP: a.7.3.1 c.3.1.4
d.168.1.1 PDB: 1jnz_A* 2fjb_A* 2fja_A* 2fjd_A* 2fje_A*
Length = 643
Score = 32.5 bits (74), Expect = 0.75
Identities = 12/35 (34%), Positives = 20/35 (57%), Gaps = 3/35 (8%)
Query: 139 DYDFIVIGGGSSG---AVVANRLSEVPNWRVLLIE 170
+ D ++IGGG SG A A +++ +V L+E
Sbjct: 22 ETDILIIGGGFSGCGAAYEAAYWAKLGGLKVTLVE 56
>3v76_A Flavoprotein; structural genomics, PSI-biology, NEW YORK structural
genomi research consortium, nysgrc; HET: FDA; 2.51A
{Sinorhizobium meliloti}
Length = 417
Score = 32.1 bits (74), Expect = 0.89
Identities = 11/38 (28%), Positives = 19/38 (50%), Gaps = 7/38 (18%)
Query: 138 RDYDFIVIGGGSSG---AVVANRLSEVPNWRVLLIEAG 172
D ++IG G++G A+ A + RVL+I+
Sbjct: 26 EKQDVVIIGAGAAGMMCAIEAGKR----GRRVLVIDHA 59
>2gqf_A Hypothetical protein HI0933; structural genomics, FAD-utilizing
protein, flavoprotein, PS protein structure initiative;
HET: FAD; 2.70A {Haemophilus influenzae} SCOP: c.3.1.8
e.74.1.1
Length = 401
Score = 31.7 bits (73), Expect = 1.0
Identities = 8/34 (23%), Positives = 15/34 (44%), Gaps = 7/34 (20%)
Query: 140 YDFIVIGGGSSG---AVVANRLSEVPNWRVLLIE 170
+ I+IG G++G A +L V + +
Sbjct: 5 SENIIIGAGAAGLFCAAQLAKL----GKSVTVFD 34
>3d1c_A Flavin-containing putative monooxygenase; NP_373108.1, struc
genomics, joint center for structural genomics, JCSG;
HET: FAD UNL; 2.40A {Staphylococcus aureus}
Length = 369
Score = 31.7 bits (72), Expect = 1.1
Identities = 15/70 (21%), Positives = 25/70 (35%), Gaps = 8/70 (11%)
Query: 508 AFLRPIISRNNLHILLNTTVTRVIVDPLTKAAIGVEFLTNGRLERLQAKNEVIVCAGAVD 567
+L+ + + L+I NT VT + + T E A + V G +
Sbjct: 92 EYLQVVANHYELNIFENTVVTNI-----SADDAYYTIATTT--ETYHADY-IFVATGDYN 143
Query: 568 SPRILLLSGI 577
P+ GI
Sbjct: 144 FPKKPFKYGI 153
>2iid_A L-amino-acid oxidase; flavoenzyme, FAD binding domain, reaction
mechanism, sustrat binding, oxidoreductase; HET: NAG FUC
PHE FAD; 1.80A {Calloselasma rhodostoma} SCOP: c.3.1.2
d.16.1.5 PDB: 1f8s_A* 1f8r_A* 1reo_A* 1tdk_A* 1tdn_A*
1tdo_A* 3kve_A* 4e0v_A*
Length = 498
Score = 31.8 bits (72), Expect = 1.1
Identities = 15/68 (22%), Positives = 26/68 (38%), Gaps = 23/68 (33%)
Query: 128 NRPLSRGFPDRDYDF------------------IVIGGGSSGAVVANRLSEVPNWRVLLI 169
PL+ F + DY+ +++G G +G A L+ +V ++
Sbjct: 4 RNPLAECFQENDYEEFLEIARNGLKATSNPKHVVIVGAGMAGLSAAYVLAGA-GHQVTVL 62
Query: 170 EA----GG 173
EA GG
Sbjct: 63 EASERPGG 70
>3h28_A Sulfide-quinone reductase; monotopic membrane protein,
flavoprotein, polysulfur, oxidoreductase; HET: FAD DCQ
LMT; 2.00A {Aquifex aeolicus} PDB: 3h27_A* 3h29_A*
3hyv_A* 3hyw_A* 3hyx_A*
Length = 430
Score = 31.6 bits (72), Expect = 1.2
Identities = 11/29 (37%), Positives = 16/29 (55%), Gaps = 1/29 (3%)
Query: 143 IVIGGGSSGAVVANRLSE-VPNWRVLLIE 170
+VIGGG G A L +P+ ++ LI
Sbjct: 6 VVIGGGVGGIATAYNLRNLMPDLKITLIS 34
>3qj4_A Renalase; FAD/NAD(P)-binding rossmann fold superfamily, flavin
contain oxidoreductase, monoamine oxidase, NAD,
extracellular, oxidoreductase; HET: FAD; 2.50A {Homo
sapiens}
Length = 342
Score = 31.3 bits (69), Expect = 1.4
Identities = 6/36 (16%), Positives = 15/36 (41%), Gaps = 2/36 (5%)
Query: 141 DFIVIGGGSSGAVVANRLSE--VPNWRVLLIEAGGD 174
+++G G +G++ A L + + + D
Sbjct: 3 QVLIVGAGMTGSLCAALLRRQTSGPLYLAVWDKADD 38
Score = 30.5 bits (67), Expect = 2.6
Identities = 5/29 (17%), Positives = 13/29 (44%)
Query: 63 DFIVIGGGSSGAVVANRLSEMNTCNCPVT 91
+++G G +G++ A L + +
Sbjct: 3 QVLIVGAGMTGSLCAALLRRQTSGPLYLA 31
>3nks_A Protoporphyrinogen oxidase; FAD containing protein, PPO, variegate
porphyria disease, VP oxidoreductase-oxidoreductase
inhibitor complex; HET: ACJ FAD; 1.90A {Homo sapiens}
Length = 477
Score = 31.6 bits (71), Expect = 1.4
Identities = 13/36 (36%), Positives = 20/36 (55%), Gaps = 5/36 (13%)
Query: 143 IVIGGGSSGAVVANRLSEV-PNWRVLLIEA----GG 173
+V+GGG SG + LS +V+L+E+ GG
Sbjct: 6 VVLGGGISGLAASYHLSRAPCPPKVVLVESSERLGG 41
>2ivd_A PPO, PPOX, protoporphyrinogen oxidase; porphyrin biosynthesis,
chlorophyll biosynthesis, oxidoreductase, HAEM
biosynthesis, heme biosynthesis; HET: ACJ FAD TWN; 2.3A
{Myxococcus xanthus} SCOP: c.3.1.2 d.16.1.5 PDB: 2ive_A*
Length = 478
Score = 31.1 bits (70), Expect = 1.7
Identities = 11/36 (30%), Positives = 17/36 (47%), Gaps = 1/36 (2%)
Query: 138 RDYDFIVIGGGSSGAVVANRLSEVPNWRVLLIEAGG 173
+ V+GGG SG VA+ L +L+E+
Sbjct: 15 TGMNVAVVGGGISGLAVAHHLRSRG-TDAVLLESSA 49
>1y56_B Sarcosine oxidase; dehydrogenase, protein-protein complex,
oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus
horikoshii}
Length = 382
Score = 31.0 bits (71), Expect = 1.8
Identities = 11/33 (33%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
Query: 140 YDFIVIGGGSSGAVVANRLSEVPNWRVLLIEAG 172
+ +VIGGG G +A+ L++ V +IE
Sbjct: 6 SEIVVIGGGIVGVTIAHELAKR-GEEVTVIEKR 37
>2weu_A Tryptophan 5-halogenase; regioselectivity, antifungal protei; HET:
TRP; 1.70A {Streptomyces rugosporus} PDB: 2wet_A*
2wes_A*
Length = 511
Score = 31.2 bits (69), Expect = 1.8
Identities = 14/55 (25%), Positives = 27/55 (49%), Gaps = 7/55 (12%)
Query: 143 IVIGGGSSGAVVANRLSEV--PNWRVLLIEAGGDEPTGT---QIPSM--FLNFLG 190
+++GGG++G + A+ L V L+E+G G ++ F ++LG
Sbjct: 6 VIVGGGTAGWMTASYLKAAFDDRIDVTLVESGNVRRIGVGEATFSTVRHFFDYLG 60
>2x3n_A Probable FAD-dependent monooxygenase; oxidoreductase; HET: FAD;
1.75A {Pseudomonas aeruginosa}
Length = 399
Score = 31.1 bits (71), Expect = 1.9
Identities = 12/42 (28%), Positives = 19/42 (45%), Gaps = 1/42 (2%)
Query: 137 DRDYDFIVIGGGSSGAVVANRLSEVPNWRVLLIEAGGDEPTG 178
D D ++ G G GA++A L RV+++E E
Sbjct: 4 DNHIDVLINGCGIGGAMLAYLLGRQ-GHRVVVVEQARRERAI 44
>1chu_A Protein (L-aspartate oxidase); flavoenzyme, NAD biosynthesis, FAD,
oxidoreductase; 2.20A {Escherichia coli} SCOP: a.7.3.1
c.3.1.4 d.168.1.1 PDB: 1knr_A* 1knp_A*
Length = 540
Score = 31.1 bits (71), Expect = 1.9
Identities = 10/34 (29%), Positives = 21/34 (61%), Gaps = 2/34 (5%)
Query: 136 PDRDYDFIVIGGGSSGAVVANRLSEVPNWRVLLI 169
P+ D ++IG G++G +A RL+ +V+++
Sbjct: 5 PEHSCDVLIIGSGAAGLSLALRLA--DQHQVIVL 36
>1kq3_A Glycerol dehydrogenase; structural genomics, joint center FO
structural genomics, JCSG, protein structure initiative,
PS oxidoreductase; 1.50A {Thermotoga maritima} SCOP:
e.22.1.2
Length = 376
Score = 30.8 bits (70), Expect = 1.9
Identities = 18/63 (28%), Positives = 27/63 (42%), Gaps = 13/63 (20%)
Query: 46 EDPCNRPLSR--GFPDRDYDFIV-IGGGSS---GAVVANRLSEMNTCNCPVTQPGPTLAS 99
+ + + R G + + D +V IGGG + VA +L PV PT+AS
Sbjct: 77 GECSDEEIERLSGLVEEETDVVVGIGGGKTLDTAKAVAYKL------KKPVVIV-PTIAS 129
Query: 100 TCG 102
T
Sbjct: 130 TDA 132
>1s3a_A NADH-ubiquinone oxidoreductase B8 subunit; CI-B8, ndufa2, complex
I; NMR {Homo sapiens} SCOP: c.47.1.22
Length = 102
Score = 29.0 bits (65), Expect = 1.9
Identities = 10/33 (30%), Positives = 14/33 (42%), Gaps = 10/33 (30%)
Query: 709 SRGYLTLKDNNPQTP----------PLIFARYL 731
+ Y+ LK NP P P ++ARY
Sbjct: 41 EKRYVELKKANPDLPILIRECSDVQPKLWARYA 73
>3i6d_A Protoporphyrinogen oxidase; protein-inhibitor complex, cytoplasm,
FAD, flavoprotein, oxidoreductase, porphyrin
biosynthesis; HET: FAD ACJ; 2.90A {Bacillus subtilis}
Length = 470
Score = 31.1 bits (70), Expect = 1.9
Identities = 10/42 (23%), Positives = 17/42 (40%), Gaps = 5/42 (11%)
Query: 137 DRDYDFIVIGGGSSGAVVANRLS-----EVPNWRVLLIEAGG 173
D ++IGGG +G A + + + L+EA
Sbjct: 3 DGKKHVVIIGGGITGLAAAFYMEKEIKEKNLPLELTLVEASP 44
>3ce9_A Glycerol dehydrogenase; NP_348253.1, 3-dehydroquinate syntha
structural genomics, joint center for structural
genomics; HET: MSE; 2.37A {Clostridium acetobutylicum
atcc 824}
Length = 354
Score = 30.6 bits (69), Expect = 2.0
Identities = 11/48 (22%), Positives = 16/48 (33%), Gaps = 11/48 (22%)
Query: 59 DRDYDFIV-IGGGSS---GAVVANRLSEMNTCNCPVTQPGPTLASTCG 102
+ D ++ IGGG + +A P PT S G
Sbjct: 86 PAEVDALIGIGGGKAIDAVKYMAFLR------KLPFISV-PTSTSNDG 126
>1b37_A Protein (polyamine oxidase); flavin-dependent amine oxidase,
oxidoreductase; HET: NAG FCA MAN FAD; 1.90A {Zea mays}
SCOP: c.3.1.2 d.16.1.5 PDB: 1b5q_A* 1h81_A* 1h82_A*
1h83_A* 1h84_A* 1h86_A* 3kpf_A* 3ku9_A* 3l1r_A*
Length = 472
Score = 31.0 bits (70), Expect = 2.0
Identities = 16/40 (40%), Positives = 20/40 (50%), Gaps = 4/40 (10%)
Query: 138 RDYDFIVIGGGSSGAVVANRLSEVPNWRVLLIEA----GG 173
IV+G G SG A RLSE +L++EA GG
Sbjct: 3 VGPRVIVVGAGMSGISAAKRLSEAGITDLLILEATDHIGG 42
>1ta9_A Glycerol dehydrogenase; oxidoredu; 1.90A {Schizosaccharomyces
pombe}
Length = 450
Score = 30.9 bits (70), Expect = 2.1
Identities = 12/48 (25%), Positives = 19/48 (39%), Gaps = 11/48 (22%)
Query: 59 DRDYDFIV-IGGGSS---GAVVANRLSEMNTCNCPVTQPGPTLASTCG 102
D I+ +GGG + +A+ + N P PT AS+
Sbjct: 143 PDDTQVIIGVGGGKTMDSAKYIAHSM------NLPSIIC-PTTASSDA 183
>3sx6_A Sulfide-quinone reductase, putative; sulfide:quinone
oxidoreductase, Cys356Ala variant, integral membrane
protein; HET: FAD LMT DCQ; 1.80A {Acidithiobacillus
ferrooxidans} PDB: 3t0k_A* 3szc_A* 3sz0_A* 3t2z_A*
3t31_A* 3sy4_A* 3syi_A* 3sxi_A* 3t14_A* 3t2k_A* 3szw_A*
3szf_A* 3kpg_A* 3kpi_A* 3t2y_A* 3kpk_A*
Length = 437
Score = 30.5 bits (69), Expect = 2.4
Identities = 8/30 (26%), Positives = 13/30 (43%), Gaps = 2/30 (6%)
Query: 143 IVIGGGSSGAVVANRLSEV--PNWRVLLIE 170
+++G G+ G A + E V LI
Sbjct: 8 VILGAGTGGMPAAYEMKEALGSGHEVTLIS 37
>3nrn_A Uncharacterized protein PF1083; alpha-beta protein, structural
genomics, PSI-2, protein STRU initiative; HET: AMP;
2.10A {Pyrococcus furiosus}
Length = 421
Score = 30.4 bits (69), Expect = 2.7
Identities = 17/123 (13%), Positives = 36/123 (29%), Gaps = 21/123 (17%)
Query: 510 LRPIISRNNLHILLNTTVTRVIVDPLTKAAIGVEFLTNGRLERLQAKNEVIVCAGAVDSP 569
L II N IL V + ++ K + E I G ++
Sbjct: 195 LERIIMENKGKILTRKEVVEINIE--EKKVY----TRDN--EEYSFDV-AISNVGVRETV 245
Query: 570 RILLLSGIGPREELRRLNIAP------IHDLPGVGKNLHNHVAHFLNFFINDTDTTALNW 623
+ L+ R+ L++++ + + + + + F N
Sbjct: 246 K-LIGRDYFDRDYLKQVDSIEPSEGIKFN----LAVPGEPRIGNTI-VFTPGLMINGFNE 299
Query: 624 ATA 626
+A
Sbjct: 300 PSA 302
>1jq5_A Glycerol dehydrogenase; oxidoreductase, NAD, glycerol metabolism;
HET: NAD; 1.70A {Geobacillus stearothermophilus} SCOP:
e.22.1.2 PDB: 1jpu_A* 1jqa_A*
Length = 370
Score = 30.0 bits (68), Expect = 3.4
Identities = 11/48 (22%), Positives = 19/48 (39%), Gaps = 11/48 (22%)
Query: 59 DRDYDFIV-IGGGSS---GAVVANRLSEMNTCNCPVTQPGPTLASTCG 102
+ ++ +GGG + VA+ L + + PT AST
Sbjct: 84 KAEAAIVIGVGGGKTLDTAKAVADEL------DAYIVIV-PTAASTDA 124
>3uhj_A Probable glycerol dehydrogenase; structural genomics, PSI-biology,
NEW YORK structural genomi research consortium, nysgrc;
2.34A {Sinorhizobium meliloti}
Length = 387
Score = 29.8 bits (67), Expect = 3.8
Identities = 12/51 (23%), Positives = 18/51 (35%), Gaps = 17/51 (33%)
Query: 59 DRDYDFIV-IGGGSS---GAVVANRLSEMNTCNCP---VTQPGPTLASTCG 102
+ D +V +GGG + +VA PT+AST
Sbjct: 104 EHGSDILVGVGGGKTADTAKIVAIDT------GARIVIA----PTIASTDA 144
>3p9z_A Uroporphyrinogen III cosynthase (HEMD); MCSG, PSI2, structural
genomics, protein structure initiativ midwest center for
structural genomics; HET: MSE; 2.10A {Helicobacter
pylori}
Length = 229
Score = 29.3 bits (66), Expect = 5.1
Identities = 9/43 (20%), Positives = 14/43 (32%), Gaps = 2/43 (4%)
Query: 726 IFARYLTHPDDVKTLVDGIKIAIRLTQTA-ALQKYGFRIDTTP 767
L + +K L I TA LQ + F++
Sbjct: 51 SLLETLKNSPKLKML-QNIPAYALSEPTAKTLQDHHFKVAFMG 92
>2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION
transporter, symporter, transport protein; HET: NAI;
2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A*
2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A*
Length = 144
Score = 28.4 bits (64), Expect = 5.9
Identities = 8/22 (36%), Positives = 9/22 (40%)
Query: 63 DFIVIGGGSSGAVVANRLSEMN 84
F VIG G G + L M
Sbjct: 8 QFAVIGLGRFGGSIVKELHRMG 29
>2bcg_G Secretory pathway GDP dissociation inhibitor; RABGTPase,
geranylgeranylation, vesicular transport, protein
transport; HET: GDP GER; 1.48A {Saccharomyces
cerevisiae} SCOP: c.3.1.3 c.3.1.3 d.16.1.6 PDB: 1ukv_G*
3cpi_G 3cph_G 3cpj_G*
Length = 453
Score = 29.4 bits (65), Expect = 6.4
Identities = 17/47 (36%), Positives = 26/47 (55%), Gaps = 5/47 (10%)
Query: 137 DRDYDFIVIGGGSSGAVVANRLSEVPNWRVLLIEA----GGDEPTGT 179
D DYD IV+G G + +++ LS V +VL I+ GG+ + T
Sbjct: 9 DTDYDVIVLGTGITECILSGLLS-VDGKKVLHIDKQDHYGGEAASVT 54
>2ywl_A Thioredoxin reductase related protein; uncharacterized conserved
protein, rossmann fold, structural genomics, NPPSFA;
HET: FAD; 1.60A {Thermus thermophilus} PDB: 2cvj_A*
Length = 180
Score = 28.7 bits (65), Expect = 6.5
Identities = 13/37 (35%), Positives = 20/37 (54%), Gaps = 7/37 (18%)
Query: 140 YDFIVIGGGSSG---AVVANRLSEVPNWRVLLIEAGG 173
+D IV+GGG SG A+ R +VL+++ G
Sbjct: 2 WDVIVVGGGPSGLSAALFLAR----AGLKVLVLDGGR 34
>3cgb_A Pyridine nucleotide-disulfide oxidoreductase, CLA; coenzyme A,
flavin adenine dinucleotide, selenomethionine, F
flavoprotein; HET: COA FAD; 1.90A {Bacillus anthracis
str} PDB: 3cgc_A* 3cgd_A* 3cge_A*
Length = 480
Score = 29.4 bits (67), Expect = 6.6
Identities = 9/34 (26%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
Query: 142 FIVIGGGSSGAVVANRLSEV-PNWRVLLIEAGGD 174
+++IGG ++G A ++ N V+ +E G
Sbjct: 39 YVIIGGDAAGMSAAMQIVRNDENANVVTLEKGEI 72
>3cuc_A Protein of unknown function with A FIC domain; FIC protein family,
structural genomics, joint center for ST genomics, JCSG;
HET: MSE; 2.71A {Bacteroides thetaiotaomicron vpi-5482}
Length = 291
Score = 29.1 bits (65), Expect = 7.0
Identities = 10/39 (25%), Positives = 17/39 (43%), Gaps = 8/39 (20%)
Query: 523 LNTTVTRVIVDPLTKAAIG-VEFLT-------NGRLERL 553
N + I+ P+ AA+ ++ NGR+ RL
Sbjct: 167 YNLEADKGILTPVELAALLHYRYIRIHPFEDGNGRIARL 205
>2pyx_A Tryptophan halogenase; structural genomics, JOI for structural
genomics, JCSG, protein structure initiative
biosynthetic protein; HET: MSE TLA PG4; 1.50A
{Shewanella frigidimarina}
Length = 526
Score = 29.3 bits (64), Expect = 7.1
Identities = 17/64 (26%), Positives = 27/64 (42%), Gaps = 16/64 (25%)
Query: 143 IVIGGGSSGAVVANRLS-----------EVPNWRVLLIEAGGDEPTGT---QIPSM--FL 186
I++GGG++G + A L+ P + LIE+ G PSM L
Sbjct: 11 IIVGGGTAGWITAGLLAAEHNVDKGVLAHSPKLNITLIESPDVATIGVGEGTWPSMRSTL 70
Query: 187 NFLG 190
+ +G
Sbjct: 71 SKIG 74
>3ics_A Coenzyme A-disulfide reductase; pyridine nucleotide-disulfide
oxidoreductase class I, rhodan coenzyme A, flavin
adenine dinucleotide; HET: FAD COA ADP; 1.94A {Bacillus
anthracis} PDB: 3icr_A* 3ict_A*
Length = 588
Score = 29.1 bits (66), Expect = 7.2
Identities = 11/34 (32%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Query: 142 FIVIGGGSSGAVVANRLSEV-PNWRVLLIEAGGD 174
+V+GG + GA VA RL + ++++E G
Sbjct: 39 IVVVGGVAGGASVAARLRRLSEEDEIIMVERGEY 72
>3ic9_A Dihydrolipoamide dehydrogenase; APC62701, colwellia psychrer 34H,
structural genomics, PSI-2; HET: FAD; 2.15A {Colwellia
psychrerythraea}
Length = 492
Score = 29.1 bits (66), Expect = 7.6
Identities = 10/36 (27%), Positives = 17/36 (47%), Gaps = 1/36 (2%)
Query: 137 DRDYDFIVIGGGSSGAVVANRLSEVPNWRVLLIEAG 172
+ D +IG G++G + +V+LIE G
Sbjct: 6 VINVDVAIIGTGTAGMGAYRAAKKH-TDKVVLIEGG 40
>3ntd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; COA,
persulfide reductase, rhodanese; HET: COA FAD; 1.99A
{Shewanella loihica} PDB: 3nta_A* 3nt6_A*
Length = 565
Score = 29.1 bits (66), Expect = 7.9
Identities = 9/33 (27%), Positives = 16/33 (48%), Gaps = 1/33 (3%)
Query: 143 IVIGGGSSGAVVANRLSEV-PNWRVLLIEAGGD 174
++IGG + GA A R + +++ E G
Sbjct: 5 LIIGGVAGGASAAARARRLSETAEIIMFERGEY 37
>3kd9_A Coenzyme A disulfide reductase; PSI-II, NYSGXRC, oxidoreductase,
structural genomics structure initiative; 2.75A
{Pyrococcus horikoshii}
Length = 449
Score = 29.0 bits (66), Expect = 8.0
Identities = 12/33 (36%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
Query: 143 IVIGGGSSGAVVANRLSEV-PNWRVLLIEAGGD 174
++IGGG++G A+R+ + P W V + EA
Sbjct: 7 VIIGGGAAGMSAASRVKRLKPEWDVKVFEATEW 39
>3iwa_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase;
structural genomics, PSI-2, protein structur initiative;
2.30A {Desulfovibrio vulgaris}
Length = 472
Score = 29.0 bits (66), Expect = 8.5
Identities = 9/33 (27%), Positives = 14/33 (42%), Gaps = 1/33 (3%)
Query: 143 IVIGGGSSGAVVANRLSEV-PNWRVLLIEAGGD 174
+VIG + G A R + P V +I+
Sbjct: 7 VVIGAVALGPKAACRFKRLDPEAHVTMIDQASR 39
>3s5w_A L-ornithine 5-monooxygenase; class B flavin dependent
N-hydroxylating monooxygenase, CLAS flavin dependent
monooxygenase N-hydroxylating; HET: FAD ONH NAP; 1.90A
{Pseudomonas aeruginosa} PDB: 3s61_A*
Length = 463
Score = 28.9 bits (64), Expect = 9.4
Identities = 8/43 (18%), Positives = 15/43 (34%), Gaps = 1/43 (2%)
Query: 128 NRPLSRGFPDRDYDFIVIGGGSSGA-VVANRLSEVPNWRVLLI 169
+ + +IGGG S A + P+ + +I
Sbjct: 216 HMAKQPCSSGKPMKIAIIGGGQSAAEAFIDLNDSYPSVQADMI 258
>1yqz_A Coenzyme A disulfide reductase; oxidoreductase; HET: COA FAD; 1.54A
{Staphylococcus aureus}
Length = 438
Score = 28.6 bits (65), Expect = 9.5
Identities = 7/33 (21%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
Query: 143 IVIGGGSSGAVVANRLSEV-PNWRVLLIEAGGD 174
+V+G + GA A+++ + +++ E D
Sbjct: 5 VVVGAVAGGATCASQIRRLDKESDIIIFEKDRD 37
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.320 0.136 0.428
Gapped
Lambda K H
0.267 0.0809 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 13,705,621
Number of extensions: 862776
Number of successful extensions: 2419
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2278
Number of HSP's successfully gapped: 266
Length of query: 868
Length of database: 6,701,793
Length adjustment: 102
Effective length of query: 766
Effective length of database: 3,853,851
Effective search space: 2952049866
Effective search space used: 2952049866
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 62 (27.5 bits)