Query psy12053
Match_columns 167
No_of_seqs 134 out of 330
Neff 4.3
Searched_HMMs 29240
Date Fri Aug 16 17:27:30 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy12053.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/12053hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1mg4_A Doublecortin, doublecor 100.0 7E-35 2.4E-39 221.6 10.7 90 70-160 11-105 (113)
2 2dnf_A Doublecortin domain-con 100.0 1.5E-33 5.2E-38 212.0 7.8 89 70-159 10-99 (108)
3 4atu_I Neuronal migration prot 100.0 2.3E-30 8E-35 229.1 11.1 89 70-159 61-154 (373)
4 4atu_I Neuronal migration prot 99.9 2.8E-24 9.6E-29 190.3 0.0 92 71-163 189-282 (373)
5 3a4r_A Nfatc2-interacting prot 78.3 12 0.00042 25.1 7.5 50 90-144 21-76 (79)
6 1vd2_A Protein kinase C, IOTA 75.7 10 0.00036 27.0 6.8 59 73-138 5-68 (89)
7 2jxx_A Nfatc2-interacting prot 74.3 15 0.0005 26.3 7.3 51 90-145 39-95 (97)
8 4gdk_A Ubiquitin-like protein 65.3 33 0.0011 24.2 8.3 72 74-149 4-87 (91)
9 1ip9_A BEM1 protein; ubiquitin 64.4 6 0.00021 28.4 3.4 60 72-138 10-71 (85)
10 1wm3_A Ubiquitin-like protein 64.3 9.8 0.00034 24.9 4.3 48 90-142 14-67 (72)
11 2io0_B Small ubiquitin-related 59.9 21 0.00073 24.8 5.6 48 90-142 18-71 (91)
12 2eel_A Cell death activator CI 59.6 46 0.0016 23.9 8.5 70 72-152 9-84 (91)
13 3kyd_D Small ubiquitin-related 52.9 25 0.00085 26.0 5.2 49 90-143 53-107 (115)
14 2eke_C Ubiquitin-like protein 52.5 46 0.0016 23.9 6.5 48 90-142 43-96 (106)
15 1wz0_A Ubiquitin-like protein 51.6 26 0.00088 25.1 5.0 49 90-143 37-91 (104)
16 1f2r_I Inhibitor of caspase-ac 47.7 79 0.0027 23.0 7.7 72 73-152 17-95 (100)
17 3tix_A Ubiquitin-like protein 46.7 52 0.0018 27.0 6.6 50 89-143 68-123 (207)
18 3w1s_C Ubiquitin-like protein 46.3 56 0.0019 23.1 6.0 67 77-149 11-87 (91)
19 2io1_B Small ubiquitin-related 42.5 48 0.0016 23.0 5.1 49 90-143 20-74 (94)
20 2k8h_A Small ubiquitin protein 40.5 27 0.00093 25.3 3.6 48 90-142 39-92 (110)
21 1wz3_A Autophagy 12B, ATG12B, 38.1 78 0.0027 22.5 5.7 71 75-149 14-92 (96)
22 2d07_B Ubiquitin-like protein 36.7 68 0.0023 22.0 5.1 48 90-142 30-83 (93)
23 3pge_A SUMO-modified prolifera 35.7 52 0.0018 26.4 4.9 48 90-142 41-94 (200)
24 1q1o_A Cell division control p 26.5 87 0.003 22.7 4.3 41 74-117 5-49 (98)
25 4egu_A Histidine triad (HIT) p 24.1 42 0.0015 23.4 2.2 33 73-106 23-55 (119)
26 1d4b_A CIDE B, human cell deat 23.7 2.3E+02 0.0078 21.3 6.3 54 100-153 53-110 (122)
27 3ohe_A Histidine triad (HIT) p 23.6 44 0.0015 24.6 2.3 29 77-106 22-50 (137)
28 3h9d_A ATG8, microtubule-assoc 23.1 1.8E+02 0.006 21.4 5.6 57 88-149 48-115 (119)
29 3n1s_A HIT-like protein HINT; 23.0 44 0.0015 23.7 2.1 32 73-105 22-53 (119)
30 3oj7_A Putative histidine tria 22.8 45 0.0015 23.3 2.1 33 73-106 26-58 (117)
31 3o1c_A Histidine triad nucleot 22.3 45 0.0016 23.8 2.1 32 73-105 34-65 (126)
32 2v2f_A Penicillin binding prot 22.1 39 0.0013 18.0 1.3 16 120-135 6-21 (26)
33 1ibx_B Chimera of IGG binding 21.4 1.5E+02 0.0053 22.9 5.1 53 100-152 81-140 (145)
34 1pqs_A Cell division control p 21.4 82 0.0028 21.6 3.2 39 91-132 5-50 (77)
35 1wpi_A YKR049C, hypothetical 1 21.3 2E+02 0.0067 22.0 5.6 45 65-112 3-62 (133)
36 3jyu_A Ubiquitin carboxyl-term 21.2 1.2E+02 0.004 24.2 4.6 49 74-126 139-188 (231)
37 3p0t_A Uncharacterized protein 20.7 50 0.0017 23.7 2.1 33 73-106 24-56 (138)
38 2cx6_A Hypothetical protein YH 20.7 1E+02 0.0035 21.2 3.6 26 91-117 3-28 (90)
39 3m95_A Autophagy related prote 20.4 2.7E+02 0.0092 20.7 6.6 56 89-149 54-120 (125)
No 1
>1mg4_A Doublecortin, doublecortin-like kinase (N-terminal domain); DCX domain, microtubule bundling, cortex development, transferase; 1.50A {Homo sapiens} SCOP: d.15.11.1 PDB: 1mfw_A 1mjd_A 2bqq_A 2xrp_I*
Probab=100.00 E-value=7e-35 Score=221.59 Aligned_cols=90 Identities=39% Similarity=0.684 Sum_probs=83.3
Q ss_pred CCCCceEEEEEEcCCCCCCcEEEEECCCCCCCCHHHHHHHHHh----cCCCCCcceEEEccCC-ceecCccccccCCeEE
Q psy12053 70 SYWRARKVTFFKNGDPYFPGVEYRFKPGRDIPSLEALQDKLSV----RMDLPRGARYVFSMDG-VRILTLDELEDNASYV 144 (167)
Q Consensus 70 ~~~kaKrI~vYRNGD~~f~Gv~vvVs~~R~~ksfd~LLd~LTe----kV~Lp~GVR~LYT~dG-~~V~sLddLedG~~YV 144 (167)
++++||+|+||||||+||+|++|+|++ |.++|||+||++||+ +|.||+|||+|||+|| ++|++|+||+||+.||
T Consensus 11 ~~~kak~I~~yrNGD~~~~G~~~~v~~-~~~~tfd~LL~~lT~~Ls~~v~lp~GVR~lyt~~G~~~I~sl~dL~dG~~YV 89 (113)
T 1mg4_A 11 SEKKAKKVRFYRNGDRYFKGIVYAISP-DRFRSFEALLADLTRTLSDNVNLPQGVRTIYTIDGLKKISSLDQLVEGESYV 89 (113)
T ss_dssp --CCSEEEEEEETTCSSCCCEEEEECT-TTCSSHHHHHHHHHHHHCCSSSSTTCCCEEEETTSSCBCCSGGGCCTTCEEE
T ss_pred CCCCceEEEEEECCCCCCCCEEEEECc-cccCCHHHHHHHHHHHHhhcCCCCcceeEEEcCCCCeEcCCHHHhhCCCEEE
Confidence 356999999999999999999999998 679999999999976 5699999999999999 8999999999999999
Q ss_pred EecCCCccccCcccce
Q psy12053 145 VSSYKTFKVRFYPFVF 160 (167)
Q Consensus 145 asG~E~FKkl~Y~~i~ 160 (167)
|||.|+||+++|..+.
T Consensus 90 c~~~e~fk~i~Y~~~~ 105 (113)
T 1mg4_A 90 CGSIEPFKKLEYTKNV 105 (113)
T ss_dssp EESSSCCCCCCTTTTC
T ss_pred EeCCCCceecCcCccC
Confidence 9999999999998754
No 2
>2dnf_A Doublecortin domain-containing protein 2; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens}
Probab=100.00 E-value=1.5e-33 Score=212.00 Aligned_cols=89 Identities=17% Similarity=0.282 Sum_probs=85.6
Q ss_pred CCCCceEEEEEEcCCCCCCcEEEEECCCCCCCCHHHHHHHHHhcCCCCCc-ceEEEccCCceecCccccccCCeEEEecC
Q psy12053 70 SYWRARKVTFFKNGDPYFPGVEYRFKPGRDIPSLEALQDKLSVRMDLPRG-ARYVFSMDGVRILTLDELEDNASYVVSSY 148 (167)
Q Consensus 70 ~~~kaKrI~vYRNGD~~f~Gv~vvVs~~R~~ksfd~LLd~LTekV~Lp~G-VR~LYT~dG~~V~sLddLedG~~YVasG~ 148 (167)
+..+||+|+||||||++++|++++|++ |.+++||+||++||++|+||+| ||+|||++|++|.+|+||+||+.|||||.
T Consensus 10 ~~~~pk~I~v~rNGD~~~~g~~v~i~~-~~~~sfe~lL~~lT~~v~l~~GaVr~Lyt~~G~~V~~l~dl~dg~~YVa~g~ 88 (108)
T 2dnf_A 10 PLQEPCTIFLIANGDLINPASRLLIPR-KTLNQWDHVLQMVTEKITLRSGAVHRLYTLEGKLVESGAELENGQFYVAVGR 88 (108)
T ss_dssp CCCCCEEEEECBTTCSSSCCEEEEECH-HHHTCHHHHHHHHHHHCCCTTSSCCEEEETTCCEESSTTSCCSSCBEEEECS
T ss_pred CCCcceEEEEEeCCCCCCCCEEEEECC-ccccCHHHHHHHHHHhhCCCCCCEEEEEcCCCCEeCCHHHhCCCCEEEEeCC
Confidence 367999999999999999999999998 7899999999999999999999 99999999999999999999999999999
Q ss_pred CCccccCcccc
Q psy12053 149 KTFKVRFYPFV 159 (167)
Q Consensus 149 E~FKkl~Y~~i 159 (167)
|+||+++|..+
T Consensus 89 E~fk~~~Y~~~ 99 (108)
T 2dnf_A 89 DKFKKLPYGEL 99 (108)
T ss_dssp SCCCCCCCHHH
T ss_pred CcceecccCcc
Confidence 99999999874
No 3
>4atu_I Neuronal migration protein doublecortin; hydrolase, microtubule-associated protein; HET: GDP GTP; 8.30A {Homo sapiens} PDB: 1uf0_A
Probab=99.96 E-value=2.3e-30 Score=229.12 Aligned_cols=89 Identities=39% Similarity=0.695 Sum_probs=80.9
Q ss_pred CCCCceEEEEEEcCCCCCCcEEEEECCCCCCCCHHHHHHHHHh----cCCCCCcceEEEccCC-ceecCccccccCCeEE
Q psy12053 70 SYWRARKVTFFKNGDPYFPGVEYRFKPGRDIPSLEALQDKLSV----RMDLPRGARYVFSMDG-VRILTLDELEDNASYV 144 (167)
Q Consensus 70 ~~~kaKrI~vYRNGD~~f~Gv~vvVs~~R~~ksfd~LLd~LTe----kV~Lp~GVR~LYT~dG-~~V~sLddLedG~~YV 144 (167)
++.+||+|+||||||+||+|++|+|++ |.|++||+||++||+ +|.||+|||+|||++| ++|.+|||||||++||
T Consensus 61 ~~~kAKrV~fyrNGD~~f~G~~~~V~~-~r~~tfd~lL~~lT~~Ls~~v~LP~GVR~i~tp~G~~~i~~ld~LedG~~YV 139 (373)
T 4atu_I 61 NEKKAKKVRFYRNGDRYFKGIVYAVSS-DRFRSFDALLADLTRSLSDNINLPQGVRYIYTIDGSRKIGSMDELEEGESYV 139 (373)
T ss_dssp ---CCEEEEEEESSCSSCCCEEEEECT-TTCSSHHHHHHHHHHHSCCSSSCTTSCSEEEETTSSSEECSGGGCCTTEEEE
T ss_pred CCccceEEEEEeCCCCCCCCeEEEECC-cccCCHHHHHHHHHHHhhccCCCCceeEEEEcCCCCeecCcHHHhccCCEEE
Confidence 468999999999999999999999998 669999999999875 5789999999999987 5799999999999999
Q ss_pred EecCCCccccCcccc
Q psy12053 145 VSSYKTFKVRFYPFV 159 (167)
Q Consensus 145 asG~E~FKkl~Y~~i 159 (167)
|||.|+||+++|..+
T Consensus 140 ~s~~e~fKki~Y~~~ 154 (373)
T 4atu_I 140 CSSDNFFKKVEYTKN 154 (373)
T ss_dssp EESSCCCCCCCCCCC
T ss_pred EeCCCCccccccccc
Confidence 999999999999854
No 4
>4atu_I Neuronal migration protein doublecortin; hydrolase, microtubule-associated protein; HET: GDP GTP; 8.30A {Homo sapiens} PDB: 1uf0_A
Probab=99.88 E-value=2.8e-24 Score=190.27 Aligned_cols=92 Identities=16% Similarity=0.335 Sum_probs=0.0
Q ss_pred CCCceEEEEEEcCCCCCCcEEEEECCCCCCCCHHHHHHHHHhcCCCCCc-ceEEEccCCceecCccc-cccCCeEEEecC
Q psy12053 71 YWRARKVTFFKNGDPYFPGVEYRFKPGRDIPSLEALQDKLSVRMDLPRG-ARYVFSMDGVRILTLDE-LEDNASYVVSSY 148 (167)
Q Consensus 71 ~~kaKrI~vYRNGD~~f~Gv~vvVs~~R~~ksfd~LLd~LTekV~Lp~G-VR~LYT~dG~~V~sLdd-LedG~~YVasG~ 148 (167)
..++|+|+||||||.++++++|+||+ |.+++||+||++||++|+|++| ||+|||++|++|.+++| |++|+.|||||.
T Consensus 189 ~~kPk~I~V~rNGd~~~~~~rvlLn~-r~~~sfe~vL~~ite~l~l~~GaVrkLyT~~G~~v~~l~d~l~~~~~yVA~G~ 267 (373)
T 4atu_I 189 FVRPKLVTIIRSGVKPRKAVRVLLNK-KTAHSFEQVLTDITEAIKLETGVVKKLYTLDGKQVTCLHDFFGDDDVFIACGP 267 (373)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCCccEEEEEeCCCCCCCCEEEEECC-ccccCHHHHHHHHHhhcCCCCCceeEEEcCCCCEecCHHHHhcCCCEEEEecC
Confidence 46899999999999999999999998 9999999999999999999999 99999999999999877 779999999999
Q ss_pred CCccccCcccceeee
Q psy12053 149 KTFKVRFYPFVFTYL 163 (167)
Q Consensus 149 E~FKkl~Y~~i~~y~ 163 (167)
|+||.++|++....+
T Consensus 268 E~Fk~~~~d~~~~~~ 282 (373)
T 4atu_I 268 EKFRYAQDDFSLDEN 282 (373)
T ss_dssp ---------------
T ss_pred CcCcccccccccccc
Confidence 999999998766543
No 5
>3a4r_A Nfatc2-interacting protein; ubiquitin fold, coiled coil, cytoplasm, methylation, nucleus, transcription; 1.00A {Mus musculus} PDB: 3a4s_C 3rd2_A
Probab=78.32 E-value=12 Score=25.08 Aligned_cols=50 Identities=22% Similarity=0.351 Sum_probs=37.9
Q ss_pred EEEEECCCCCCCCHHHHHHHHHhcCCCCCc-ceEEEccCCceec---Ccccc--ccCCeEE
Q psy12053 90 VEYRFKPGRDIPSLEALQDKLSVRMDLPRG-ARYVFSMDGVRIL---TLDEL--EDNASYV 144 (167)
Q Consensus 90 v~vvVs~~R~~ksfd~LLd~LTekV~Lp~G-VR~LYT~dG~~V~---sLddL--edG~~YV 144 (167)
+.+-|.+ ...|..|++...++..++.. +|-+| ||.+|. ++++| +||+..=
T Consensus 21 i~~~i~~---~t~l~kl~~~y~~~~gi~~~~~rf~f--dG~~l~~~~Tp~~l~medgD~Id 76 (79)
T 3a4r_A 21 LEISLSP---DSPLKVLMSHYEEAMGLSGHKLSFFF--DGTKLSGKELPADLGLESGDLIE 76 (79)
T ss_dssp EEEEECT---TSCHHHHHHHHHHHHTCTTCCCEEEE--TTEECCSCCCHHHHTCCTTCEEE
T ss_pred EEEEECC---CChHHHHHHHHHHHhCCCcccEEEEE--CCEEcCCCCCHHHcCCCCCCEEE
Confidence 4567753 56899999999999998877 89888 688876 45554 4777643
No 6
>1vd2_A Protein kinase C, IOTA type; PB1 domain, OPCA motif, APKC, ZIP/P62, MEK5, molecular recognition, transferase; NMR {Homo sapiens} SCOP: d.15.2.2 PDB: 1wmh_A
Probab=75.73 E-value=10 Score=26.97 Aligned_cols=59 Identities=20% Similarity=0.234 Sum_probs=41.5
Q ss_pred CceEEEEEEcCCCCCCcEEEEECCCCCCCCHHHHHHHHHhcCCCCCc--ceEEE-ccCCceec--Cccccc
Q psy12053 73 RARKVTFFKNGDPYFPGVEYRFKPGRDIPSLEALQDKLSVRMDLPRG--ARYVF-SMDGVRIL--TLDELE 138 (167)
Q Consensus 73 kaKrI~vYRNGD~~f~Gv~vvVs~~R~~ksfd~LLd~LTekV~Lp~G--VR~LY-T~dG~~V~--sLddLe 138 (167)
.+-+|.+|=|||. +.+.+++ --+|++|.++|.+..++..+ +.-=| +-+|..|. |=+||+
T Consensus 5 ~~vkvK~~~~gdi----~~~~v~~---~i~~~~L~~kv~~~~~~~~~~~f~lky~DEeGD~itisSd~EL~ 68 (89)
T 1vd2_A 5 SQVRVKAYYRGDI----MITHFEP---SISFEGLCNEVRDMCSFDNEQLFTMKWIDEEGDPCTVSSQLELE 68 (89)
T ss_dssp SCEEEEEESSSCE----EEEEECT---TCCHHHHHHHHHHHTTCCSSCCEEEEECCSSSCCEECCSHHHHH
T ss_pred CeEEEEEEeCCeE----EEEECCC---CCCHHHHHHHHHHHhCCCCCCeEEEEEECCCCCcccccCHHHHH
Confidence 4578999999993 4566765 35999999999999988644 33333 34788755 545554
No 7
>2jxx_A Nfatc2-interacting protein; nuclear factor of activated T-cells, cytoplasmic 2- interacting protein, ubiquitin like homologue; NMR {Homo sapiens}
Probab=74.35 E-value=15 Score=26.33 Aligned_cols=51 Identities=20% Similarity=0.307 Sum_probs=38.4
Q ss_pred EEEEECCCCCCCCHHHHHHHHHhcCCCCCc-ceEEEccCCceec---Cccc--cccCCeEEE
Q psy12053 90 VEYRFKPGRDIPSLEALQDKLSVRMDLPRG-ARYVFSMDGVRIL---TLDE--LEDNASYVV 145 (167)
Q Consensus 90 v~vvVs~~R~~ksfd~LLd~LTekV~Lp~G-VR~LYT~dG~~V~---sLdd--LedG~~YVa 145 (167)
+.+-|.+ ...|..|++...++..++.. +|-+| ||.+|. +.++ +|||+..=|
T Consensus 39 v~fkIk~---~t~l~kLm~aY~~~~g~~~~~vrF~F--DG~rI~~~~TP~dLdMEDgD~IDv 95 (97)
T 2jxx_A 39 LEVSLSR---DSPLKTLMSHYEEAMGLSGRKLSFFF--DGTKLSGRELPADLGMESGDLIEV 95 (97)
T ss_dssp EEEEEET---TSCHHHHHHHHHHHTTCSSSCCEEEE--TTEECCSCSCHHHHTCCTTEEEEE
T ss_pred EEEEECC---CChHHHHHHHHHHHHCCCcccEEEEE--CCEEcCCCCCHHHcCCCCCCEEEE
Confidence 5677753 46799999999999999877 99888 699886 4554 457776433
No 8
>4gdk_A Ubiquitin-like protein ATG12; protein-protein conjugate, protein-protein complex, ubiquiti protein, E3 ligase, ubiquitin-like fold; 2.70A {Homo sapiens} PDB: 4gdl_A
Probab=65.33 E-value=33 Score=24.20 Aligned_cols=72 Identities=11% Similarity=0.171 Sum_probs=45.9
Q ss_pred ceEEEEEEc-CCC-CCCcEEEEECCCCCCCCHHHHHHHHHhcCCCCCc-ceEEEccCCceec----Ccccc-----ccCC
Q psy12053 74 ARKVTFFKN-GDP-YFPGVEYRFKPGRDIPSLEALQDKLSVRMDLPRG-ARYVFSMDGVRIL----TLDEL-----EDNA 141 (167)
Q Consensus 74 aKrI~vYRN-GD~-~f~Gv~vvVs~~R~~ksfd~LLd~LTekV~Lp~G-VR~LYT~dG~~V~----sLddL-----edG~ 141 (167)
.|.+.-|+. ||. .-.-.++.|+. -.+|.+|+..|.++++|+.. .=-||- +..-.. .+.+| +||.
T Consensus 4 ~Kv~v~fk~~g~~P~l~k~KflVp~---~~tv~~~~~~lRkrL~l~~~~alFlyV-nn~~~P~~d~~~~~Ly~~~k~DGf 79 (91)
T 4gdk_A 4 KKIDILLKAVGDTPIMKTKKWAVER---TRTIQGLIDFIKKFLKLVASEQLFIYV-NQSFAPSPDQEVGTLYECFGSDGK 79 (91)
T ss_dssp CEEEEEEEECSSSCCCSCCEEEEET---TCBHHHHHHHHHHHTTCCSSSCCEEEE-TTTBCCCTTCBHHHHHHHHCBTTE
T ss_pred ceEEEEEEecCCCCcccccEEEcCC---CCCHHHHHHHHHHHhCCCCCCeEEEEE-CCccCCChhhHHHHHHHHhCCCCE
Confidence 344444444 884 44667899986 46999999999999999755 444442 222111 12222 4888
Q ss_pred eEEEecCC
Q psy12053 142 SYVVSSYK 149 (167)
Q Consensus 142 ~YVasG~E 149 (167)
.||+-+.+
T Consensus 80 Lyv~Ys~~ 87 (91)
T 4gdk_A 80 LVLHYCKS 87 (91)
T ss_dssp EEEEEESS
T ss_pred EEEEEeCc
Confidence 89987754
No 9
>1ip9_A BEM1 protein; ubiquitin alpha/beta roll, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 1ipg_A 2kfk_A
Probab=64.42 E-value=6 Score=28.42 Aligned_cols=60 Identities=20% Similarity=0.323 Sum_probs=41.6
Q ss_pred CCceEEEEEEcCCCCCCcEEEEECCCCCCCCHHHHHHHHHhcCCCCCcceEE--EccCCceecCccccc
Q psy12053 72 WRARKVTFFKNGDPYFPGVEYRFKPGRDIPSLEALQDKLSVRMDLPRGARYV--FSMDGVRILTLDELE 138 (167)
Q Consensus 72 ~kaKrI~vYRNGD~~f~Gv~vvVs~~R~~ksfd~LLd~LTekV~Lp~GVR~L--YT~dG~~V~sLddLe 138 (167)
..+-+|.||=|+|.+ -+.|+.. =+|.+|-+.|.+++++..-+-.. +.+.|..|.+=+||.
T Consensus 10 ~~~~KVK~yy~DDIi----AIrvP~d---i~~~~L~dKi~~RLk~~~~~l~~ykde~~g~~i~sD~dl~ 71 (85)
T 1ip9_A 10 LKTTKIKFYYKDDIF----ALMLKGD---TTYKELRSKIAPRIDTDNFKLQTKLFDGSGEEIKTDSQVS 71 (85)
T ss_dssp CCCEEEEECBTTCCE----EEEECSC---CCHHHHHHHHHHHHTSSCEEEEECCSSSCCSCCCSHHHHH
T ss_pred cCceEEEEEecCcEE----EEECCCC---CCHHHHHHHHHHHhcccceEEEEecCCCCCCcccCHHHHH
Confidence 366799999999964 3667652 37999999999999984333233 345677666555543
No 10
>1wm3_A Ubiquitin-like protein SMT3B; ubiquitin fold, half-open barrel, two helices, protein transport; 1.20A {Homo sapiens} SCOP: d.15.1.1 PDB: 1wm2_A 3uin_B 3uio_B 2ckh_B
Probab=64.33 E-value=9.8 Score=24.95 Aligned_cols=48 Identities=31% Similarity=0.452 Sum_probs=36.1
Q ss_pred EEEEECCCCCCCCHHHHHHHHHhcCCCCCc-ceEEEccCCceec---Cccccc--cCCe
Q psy12053 90 VEYRFKPGRDIPSLEALQDKLSVRMDLPRG-ARYVFSMDGVRIL---TLDELE--DNAS 142 (167)
Q Consensus 90 v~vvVs~~R~~ksfd~LLd~LTekV~Lp~G-VR~LYT~dG~~V~---sLddLe--dG~~ 142 (167)
+.+-|.+ ...|..|++...++..++.. +|-+| ||.++. ++++|. ||+.
T Consensus 14 v~~~v~~---~t~l~kl~~~y~~~~gi~~~~~rf~f--dG~~l~~~~Tp~~l~medgD~ 67 (72)
T 1wm3_A 14 VQFKIKR---HTPLSKLMKAYCERQGLSMRQIRFRF--DGQPINETDTPAQLEMEDEDT 67 (72)
T ss_dssp EEEEECT---TSCTHHHHHHHHHHHTCCTTTCEEEE--TTEECCTTCCTTTTTCCTTEE
T ss_pred EEEEECC---CChHHHHHHHHHHHhCCCcceEEEEE--CCEEcCCCCCHHHcCCCCCCE
Confidence 4566653 57899999999999998877 99888 588875 455544 6654
No 11
>2io0_B Small ubiquitin-related modifier 2 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.30A {Homo sapiens} SCOP: d.15.1.1
Probab=59.93 E-value=21 Score=24.82 Aligned_cols=48 Identities=31% Similarity=0.452 Sum_probs=36.8
Q ss_pred EEEEECCCCCCCCHHHHHHHHHhcCCCCCc-ceEEEccCCceec---Ccccc--ccCCe
Q psy12053 90 VEYRFKPGRDIPSLEALQDKLSVRMDLPRG-ARYVFSMDGVRIL---TLDEL--EDNAS 142 (167)
Q Consensus 90 v~vvVs~~R~~ksfd~LLd~LTekV~Lp~G-VR~LYT~dG~~V~---sLddL--edG~~ 142 (167)
+.+-|.+ ...|..|++...++..++.. +|-+| ||.+|. +++|| +||+.
T Consensus 18 v~~~vk~---~t~l~kl~~~y~~~~gi~~~~~rf~F--dG~~l~~~~Tp~dl~medgD~ 71 (91)
T 2io0_B 18 VQFKIKR---HTPLSKLMKAYCERQGLSMRQIRFRF--DGQPINETDTPAQLEMEDEDT 71 (91)
T ss_dssp EEEEEET---TSCTHHHHHHHHHHTTCCSTTEEEEE--TTEECCTTCCTTTTTCCTTEE
T ss_pred EEEEECC---CChHHHHHHHHHHHhCCCcccEEEEE--CCEEcCCCCCHHHcCCCCCCE
Confidence 5566754 57899999999999999877 89888 588876 45554 47765
No 12
>2eel_A Cell death activator CIDE-A; CIDE-N domain, cell death- inducing DFFA-like effector A, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=59.55 E-value=46 Score=23.88 Aligned_cols=70 Identities=26% Similarity=0.323 Sum_probs=47.3
Q ss_pred CCceEEEEEEcCCCCC-CcEEEEECCCCCCCCHHHHHHHHHhcCCCCCc-ceEEEccCCceecC---ccccccCCeEEEe
Q psy12053 72 WRARKVTFFKNGDPYF-PGVEYRFKPGRDIPSLEALQDKLSVRMDLPRG-ARYVFSMDGVRILT---LDELEDNASYVVS 146 (167)
Q Consensus 72 ~kaKrI~vYRNGD~~f-~Gv~vvVs~~R~~ksfd~LLd~LTekV~Lp~G-VR~LYT~dG~~V~s---LddLedG~~YVas 146 (167)
.++.||+ |-|+-. .|+ + ..|++.|+....+++.++.. ++-+..-||..|.+ +.-|.++-..|+.
T Consensus 9 ~kpfkV~---~~~Rs~k~GV--~------A~sL~EL~~K~~~~l~l~~~~~~lvLeeDGT~VddEeyF~tLp~nT~lmvL 77 (91)
T 2eel_A 9 ARPFRVS---NHDRSSRRGV--M------ASSLQELISKTLDALVIATGLVTLVLEEDGTVVDTEEFFQTLGDNTHFMIL 77 (91)
T ss_dssp CEEEEEE---CTTSCCCEEE--E------ESSHHHHHHHHHHHTTCSSSCEEEEETTTCCBCCCHHHHTTSCSSEEEEEE
T ss_pred CCCEEEe---cCCCCeEEeE--E------cCCHHHHHHHHHHHhcCCCCCcEEEEeeCCcEEechhhhhhCCCCCEEEEE
Confidence 4555555 777533 332 2 35899999999999999765 66666779999974 4455577776665
Q ss_pred c-CCCcc
Q psy12053 147 S-YKTFK 152 (167)
Q Consensus 147 G-~E~FK 152 (167)
. .|+..
T Consensus 78 ~~ge~W~ 84 (91)
T 2eel_A 78 EKGQKWM 84 (91)
T ss_dssp ETTCCCC
T ss_pred cCCCccC
Confidence 4 44443
No 13
>3kyd_D Small ubiquitin-related modifier 1; SUMO, thioester, adenylation, inhibitor, TETR intermediate, ligase, nucleus, phosphoprotein; HET: VMX; 2.61A {Homo sapiens} SCOP: d.15.1.1
Probab=52.95 E-value=25 Score=26.01 Aligned_cols=49 Identities=29% Similarity=0.554 Sum_probs=37.6
Q ss_pred EEEEECCCCCCCCHHHHHHHHHhcCCCCCc-ceEEEccCCceec---Ccccc--ccCCeE
Q psy12053 90 VEYRFKPGRDIPSLEALQDKLSVRMDLPRG-ARYVFSMDGVRIL---TLDEL--EDNASY 143 (167)
Q Consensus 90 v~vvVs~~R~~ksfd~LLd~LTekV~Lp~G-VR~LYT~dG~~V~---sLddL--edG~~Y 143 (167)
+.+-|.+ ...|..|++...++..++.. +|-+| ||.+|. +.++| +||+..
T Consensus 53 v~fkIk~---tt~L~KLm~aY~er~Gl~~~~irFlF--DG~rI~~~~TP~dL~MEDgD~I 107 (115)
T 3kyd_D 53 IHFKVKM---TTHLKKLKESYCQRQGVPMNSLRFLF--EGQRIADNHTPKELGMEEEDVI 107 (115)
T ss_dssp EEEEEET---TSCTHHHHHHHHHHHTCCTTSEEEEE--TTEECCTTCCTTTTTCCTTCEE
T ss_pred EEEEEcc---CChHHHHHHHHHHHhCCChhhEEEEE--CCeECCCCCCHHHcCCCCCCEE
Confidence 5667754 46799999999999999887 99999 588886 45554 477753
No 14
>2eke_C Ubiquitin-like protein SMT3; UBC9, SUMO binding motif, SBM, ligase/protein binding complex; 1.90A {Saccharomyces cerevisiae} SCOP: d.15.1.1
Probab=52.54 E-value=46 Score=23.94 Aligned_cols=48 Identities=27% Similarity=0.531 Sum_probs=36.7
Q ss_pred EEEEECCCCCCCCHHHHHHHHHhcCCCCCc-ceEEEccCCceec---Cccccc--cCCe
Q psy12053 90 VEYRFKPGRDIPSLEALQDKLSVRMDLPRG-ARYVFSMDGVRIL---TLDELE--DNAS 142 (167)
Q Consensus 90 v~vvVs~~R~~ksfd~LLd~LTekV~Lp~G-VR~LYT~dG~~V~---sLddLe--dG~~ 142 (167)
+.+-|.+ ...|..|++...++..++.. +|-|| ||.+|. ++++|. ||+.
T Consensus 43 i~fkIk~---tt~l~kL~~ay~ek~gi~~~~~rF~F--dG~rl~~~~Tp~dl~medgD~ 96 (106)
T 2eke_C 43 IFFKIKK---TTPLRRLMEAFAKRQGKEMDSLRFLY--DGIRIQADQTPEDLDMEDNDI 96 (106)
T ss_dssp EEEEEET---TSCTHHHHHHHHHHHTCCGGGEEEEE--TTEECCTTCCTTTTTCCTTEE
T ss_pred EEEEeCC---CCHHHHHHHHHHHHhCCCcccEEEEE--CCeEcCCCCCHHHcCCCCCCE
Confidence 4566653 56899999999999999877 89888 688876 466554 6665
No 15
>1wz0_A Ubiquitin-like protein SMT3B; SUMO-2, ubiquitin-like molecule, structural genomics, sentrin2, NPPFSA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=51.56 E-value=26 Score=25.07 Aligned_cols=49 Identities=31% Similarity=0.438 Sum_probs=37.0
Q ss_pred EEEEECCCCCCCCHHHHHHHHHhcCCCCCc-ceEEEccCCceec---Ccccc--ccCCeE
Q psy12053 90 VEYRFKPGRDIPSLEALQDKLSVRMDLPRG-ARYVFSMDGVRIL---TLDEL--EDNASY 143 (167)
Q Consensus 90 v~vvVs~~R~~ksfd~LLd~LTekV~Lp~G-VR~LYT~dG~~V~---sLddL--edG~~Y 143 (167)
+.+-|.+ ...|..|++...++..++.. +|-|| ||.+|. ++++| +||+..
T Consensus 37 i~~kVk~---~t~l~kL~~~y~ek~gi~~~~~rf~F--dG~~l~~~~Tp~dl~medgD~I 91 (104)
T 1wz0_A 37 VQFKIKR---HTPLSKLMKAYCERQGLSMRQIRFRF--DGQPINETDTPAQLEMEDEDTI 91 (104)
T ss_dssp EEEEECT---TSCHHHHHHHHHHHHTCCTTTSCEES--SSSBCCTTSCTTTTTCCTTEEE
T ss_pred EEEEEcC---CChHHHHHHHHHHHhCCCcceEEEEE--CCEEcCCCCCHHHcCCCCCCEE
Confidence 5677753 57899999999999998877 88888 588876 45554 477653
No 16
>1f2r_I Inhibitor of caspase-activated DNAse; alpha-beta roll, protein-protein complex, DNA binding protein; NMR {Mus musculus} SCOP: d.15.2.1
Probab=47.65 E-value=79 Score=23.04 Aligned_cols=72 Identities=19% Similarity=0.222 Sum_probs=48.4
Q ss_pred CceEEEEEEcCCCCCCcEEEEECCCCCCCCHHHHHHHHHhcCCCCC-c--ceEEEccCCceecC---ccccccCCeEEEe
Q psy12053 73 RARKVTFFKNGDPYFPGVEYRFKPGRDIPSLEALQDKLSVRMDLPR-G--ARYVFSMDGVRILT---LDELEDNASYVVS 146 (167)
Q Consensus 73 kaKrI~vYRNGD~~f~Gv~vvVs~~R~~ksfd~LLd~LTekV~Lp~-G--VR~LYT~dG~~V~s---LddLedG~~YVas 146 (167)
+.|-..|..|.|+--.|+ + ..|++.|+....+++.++. + ++-+..-||..|.+ +.-|.++-..++.
T Consensus 17 ~~kPfkV~~~~~r~k~GV--~------A~SL~EL~~K~~~~l~l~~~~~~~~lvLeeDGT~VddEeYF~tLp~nT~lmvL 88 (100)
T 1f2r_I 17 PLKPCLLRRNHSRDQHGV--A------ASSLEELRSKACELLAIDKSLTPITLVLAEDGTIVDDDDYFLCLPSNTKFVAL 88 (100)
T ss_dssp CCEEEEEEETTEEEEEEE--E------ESSHHHHHHHHHHHHCCCGGGCSCEEEESSSCCBCCSSSSSSSSCSCCEEEEE
T ss_pred CCCCEEEeeCCCccEEeE--E------cCCHHHHHHHHHHHhccCCCCCceEEEEeeCCcEEechhHhhcCCCCCEEEEE
Confidence 445555666777654443 2 3589999999999999964 2 55555679999964 4456677777776
Q ss_pred c-CCCcc
Q psy12053 147 S-YKTFK 152 (167)
Q Consensus 147 G-~E~FK 152 (167)
. .|+..
T Consensus 89 ~~ge~W~ 95 (100)
T 1f2r_I 89 ACNEKWT 95 (100)
T ss_dssp CSSSCCS
T ss_pred cCCCccC
Confidence 5 44443
No 17
>3tix_A Ubiquitin-like protein SMT3, RNA-induced transcri silencing complex protein TAS3; PIN, rossmann fold, SPOC, alpha-helical hairpin, heterochrom silencing, RITS, RNAI, argonaute; 2.90A {Saccharomyces cerevisiae}
Probab=46.68 E-value=52 Score=27.02 Aligned_cols=50 Identities=22% Similarity=0.438 Sum_probs=38.8
Q ss_pred cEEEEECCCCCCCCHHHHHHHHHhcCCCCCc-ceEEEccCCceec---Cccccc--cCCeE
Q psy12053 89 GVEYRFKPGRDIPSLEALQDKLSVRMDLPRG-ARYVFSMDGVRIL---TLDELE--DNASY 143 (167)
Q Consensus 89 Gv~vvVs~~R~~ksfd~LLd~LTekV~Lp~G-VR~LYT~dG~~V~---sLddLe--dG~~Y 143 (167)
-+.+-|.+ ...|..|++...++..++.. +|-|| ||.+|. +.+||. ||+..
T Consensus 68 eV~FKIKr---tTpL~KLmeAYcERqGL~~~sIRFLF--DGqRI~~ddTPeDLdMEDGDtI 123 (207)
T 3tix_A 68 EIFFKIKK---TTPLRRLMEAFAKRQGKEMDSLTFLY--DGIEIQADQTPEDLDMEDNDII 123 (207)
T ss_dssp EEEEEEET---TSCTHHHHHHHHHHTTCCGGGSCEEE--TTEECCSSCCTTTTTCCTTEEE
T ss_pred EEEEEEcc---CChHHHHHHHHHHHhCCCcccEEEEE--CCeecCCCCCHHHcCCCCCCEE
Confidence 35666653 57899999999999999988 99999 788886 456554 77753
No 18
>3w1s_C Ubiquitin-like protein ATG12; ubiquitin fold, E3-like, ATG3 binding, isopeptide bond betwe Gly186 and ATG5 Lys149, ligase; 2.60A {Saccharomyces cerevisiae S288C}
Probab=46.31 E-value=56 Score=23.12 Aligned_cols=67 Identities=13% Similarity=0.149 Sum_probs=37.6
Q ss_pred EEEEEcCC-CCCCcEEEEECCCCCCCCHHHHHHHHHhcCCCCCcceEEEccCCceecC----cccc-----ccCCeEEEe
Q psy12053 77 VTFFKNGD-PYFPGVEYRFKPGRDIPSLEALQDKLSVRMDLPRGARYVFSMDGVRILT----LDEL-----EDNASYVVS 146 (167)
Q Consensus 77 I~vYRNGD-~~f~Gv~vvVs~~R~~ksfd~LLd~LTekV~Lp~GVR~LYT~dG~~V~s----LddL-----edG~~YVas 146 (167)
|.|---|| +.-+-.++.|+. -.+|.+|+..|.++++| ..+ -||- +..-..+ +.+| +||..||+-
T Consensus 11 vrfk~~g~~P~l~k~KflV~~---~~t~~~~v~~lRkrL~l-~al-FlyV-Nn~f~Ps~d~~~~~Ly~~fk~dg~Lyv~Y 84 (91)
T 3w1s_C 11 IKFQPIGSIGQLKPSVCKISM---SQSFAMVILFLKRRLKM-DHV-YCYI-NNSFAPSPQQNIGELWMQFKTNDELIVSY 84 (91)
T ss_dssp EEEEECCC-------EEEEET---TSBHHHHHHHHHHHHTC-SCC-EEEE-TTTBCCCTTSBHHHHHHHHCBTTEEEEEE
T ss_pred EEEEecCCCCcccccEEEcCC---CCCHHHHHHHHHHhhCC-ceE-EEEE-CCccCCCcccHHHHHHHHhCCCCEEEEEE
Confidence 33334488 444666899986 46999999999999998 222 2332 3322222 2222 378888887
Q ss_pred cCC
Q psy12053 147 SYK 149 (167)
Q Consensus 147 G~E 149 (167)
+.+
T Consensus 85 s~~ 87 (91)
T 3w1s_C 85 CAS 87 (91)
T ss_dssp EC-
T ss_pred eCc
Confidence 654
No 19
>2io1_B Small ubiquitin-related modifier 3 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.60A {Homo sapiens} SCOP: d.15.1.1
Probab=42.51 E-value=48 Score=22.98 Aligned_cols=49 Identities=29% Similarity=0.410 Sum_probs=36.9
Q ss_pred EEEEECCCCCCCCHHHHHHHHHhcCCCCCc-ceEEEccCCceec---Ccccc--ccCCeE
Q psy12053 90 VEYRFKPGRDIPSLEALQDKLSVRMDLPRG-ARYVFSMDGVRIL---TLDEL--EDNASY 143 (167)
Q Consensus 90 v~vvVs~~R~~ksfd~LLd~LTekV~Lp~G-VR~LYT~dG~~V~---sLddL--edG~~Y 143 (167)
+.+-|.+ ...|+.|++...++..++.. +|-+|+ |++|. +++|| +||+..
T Consensus 20 i~~~v~~---~t~l~kl~~~y~~~~gi~~~~~rf~Fd--G~~l~~~~Tp~dl~medgD~I 74 (94)
T 2io1_B 20 VQFKIKR---HTPLSKLMKAYCERQGLSMRQIRFRFD--GQPINETDTPAQLEMEDEDTI 74 (94)
T ss_dssp EEEEEET---TSCTHHHHHHHHHHHTCCGGGEEEEET--TEECCTTCCTTTTTCCTTCEE
T ss_pred EEEEECC---CCHHHHHHHHHHHHhCCCcccEEEEEC--CEEcCCCCCHHHcCCCCCCEE
Confidence 5566654 57899999999999999877 888885 88775 45554 477753
No 20
>2k8h_A Small ubiquitin protein; SUMO, post-translational modifier, signaling protein; NMR {Trypanosoma brucei}
Probab=40.47 E-value=27 Score=25.33 Aligned_cols=48 Identities=33% Similarity=0.556 Sum_probs=36.6
Q ss_pred EEEEECCCCCCCCHHHHHHHHHhcCCCCCc-ceEEEccCCceec---Ccccc--ccCCe
Q psy12053 90 VEYRFKPGRDIPSLEALQDKLSVRMDLPRG-ARYVFSMDGVRIL---TLDEL--EDNAS 142 (167)
Q Consensus 90 v~vvVs~~R~~ksfd~LLd~LTekV~Lp~G-VR~LYT~dG~~V~---sLddL--edG~~ 142 (167)
+.+-|.+ ...|..|++...++..++.. +|-|| ||.+|. +++|| +||+.
T Consensus 39 i~fkVk~---~t~l~kL~~ay~ek~gi~~~~~rfiF--dG~~L~~~~Tp~dl~mEDgD~ 92 (110)
T 2k8h_A 39 MFFRIKS---RTALKKLIDTYCKKQGISRNSVRFLF--DGTPIDETKTPEELGMEDDDV 92 (110)
T ss_dssp EEEEECT---TSSHHHHHHHHHHHHTCCSSSCEEES--SSCBCCSSSHHHHHHCSSEEE
T ss_pred EEEEECC---CChHHHHHHHHHHHhCCCcccEEEEE--CCEEcCCCCCHHHcCCCCCCE
Confidence 5677754 57899999999999998877 88888 688876 35544 46665
No 21
>1wz3_A Autophagy 12B, ATG12B, APG12B; ubiquitin-fold, plant protein; 1.80A {Arabidopsis thaliana} SCOP: d.15.1.7
Probab=38.09 E-value=78 Score=22.50 Aligned_cols=71 Identities=13% Similarity=0.145 Sum_probs=45.2
Q ss_pred eEEEEEEcCCC-CCCcEEEEECCCCCCCCHHHHHHHHHhcCCCCCc----ceEEEccCC-ceecCcc-ccc-cCCeEEEe
Q psy12053 75 RKVTFFKNGDP-YFPGVEYRFKPGRDIPSLEALQDKLSVRMDLPRG----ARYVFSMDG-VRILTLD-ELE-DNASYVVS 146 (167)
Q Consensus 75 KrI~vYRNGD~-~f~Gv~vvVs~~R~~ksfd~LLd~LTekV~Lp~G----VR~LYT~dG-~~V~sLd-dLe-dG~~YVas 146 (167)
-.|.|...||. .-+-.++.|+. -.+|.+|+..|.++++|. . |..-+.|.- ..+.+|- +.. ||..||+-
T Consensus 14 V~V~~~~~~~~P~l~k~KflV~~---~~t~~~~~~~lRkrL~l~-alFlyvn~~~~Ps~d~~m~~LY~~~kdDGfLyi~Y 89 (96)
T 1wz3_A 14 IVVHLRATGGAPILKQSKFKVSG---SDKFANVIDFLRRQLHSD-SLFVYVNSAFSPNPDESVIDLYNNFGFDGKLVVNY 89 (96)
T ss_dssp EEEEEEECTTCCCCSCCEEEEET---TSBTHHHHHHHHHHHTCS-SCEEEEEEEECCCTTSBHHHHHHHHCBTTBEEEEE
T ss_pred EEEEEEECCCCCcccccEEEeCC---CCcHHHHHHHHHHhcCCc-eEEEEECCcccCChhhHHHHHHHHhCCCCEEEEEE
Confidence 46777788883 33556899986 468999999999999988 3 222232321 1232321 111 78889987
Q ss_pred cCC
Q psy12053 147 SYK 149 (167)
Q Consensus 147 G~E 149 (167)
+.+
T Consensus 90 s~~ 92 (96)
T 1wz3_A 90 ACS 92 (96)
T ss_dssp ESC
T ss_pred eCC
Confidence 754
No 22
>2d07_B Ubiquitin-like protein SMT3B; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 2rpq_A 2awt_A 2io3_B 2iyd_B 1u4a_A 2k1f_A
Probab=36.73 E-value=68 Score=22.05 Aligned_cols=48 Identities=31% Similarity=0.452 Sum_probs=36.2
Q ss_pred EEEEECCCCCCCCHHHHHHHHHhcCCCCCc-ceEEEccCCceec---Cccccc--cCCe
Q psy12053 90 VEYRFKPGRDIPSLEALQDKLSVRMDLPRG-ARYVFSMDGVRIL---TLDELE--DNAS 142 (167)
Q Consensus 90 v~vvVs~~R~~ksfd~LLd~LTekV~Lp~G-VR~LYT~dG~~V~---sLddLe--dG~~ 142 (167)
+.+-|.+ ...|..|++...++..++.. +|-+| ||.+|. ++++|. ||+.
T Consensus 30 i~~~v~~---~t~l~kl~~~y~~~~gi~~~~~rf~f--dG~~l~~~~Tp~dl~medgD~ 83 (93)
T 2d07_B 30 VQFKIKR---HTPLSKLMKAYCERQGLSMRQIRFRF--DGQPINETDTPAQLEMEDEDT 83 (93)
T ss_dssp EEEEEET---TSCHHHHHHHHHHHHTCCGGGEEEEE--TTEECCTTCCTTTTTCCTTEE
T ss_pred EEEEEcc---CCHHHHHHHHHHHHhCCCccceEEEE--CCEEcCCCCCHHHcCCCCCCE
Confidence 5677754 46899999999999999877 88777 488876 455544 7665
No 23
>3pge_A SUMO-modified proliferating cell nuclear antigen; DNA replication, DNA binding protein; 2.80A {Saccharomyces cerevisiae}
Probab=35.67 E-value=52 Score=26.41 Aligned_cols=48 Identities=27% Similarity=0.531 Sum_probs=37.5
Q ss_pred EEEEECCCCCCCCHHHHHHHHHhcCCCCCc-ceEEEccCCceec---Cccccc--cCCe
Q psy12053 90 VEYRFKPGRDIPSLEALQDKLSVRMDLPRG-ARYVFSMDGVRIL---TLDELE--DNAS 142 (167)
Q Consensus 90 v~vvVs~~R~~ksfd~LLd~LTekV~Lp~G-VR~LYT~dG~~V~---sLddLe--dG~~ 142 (167)
+.+-|.+ ...|..|++...++..++.. +|-+| ||.+|. +.+||. ||+.
T Consensus 41 v~fkIk~---~t~l~kL~~ay~er~Gi~~~~~RF~F--dG~rI~~~~TP~dL~MEdgD~ 94 (200)
T 3pge_A 41 IFFKIKK---TTPLRRLMEAFAKRQGKEMDSLRFLY--DGIRIQADQTPEDLDMEDNDI 94 (200)
T ss_dssp EEEEECT---TSCTHHHHHHHHHHHSSCGGGEEEEE--TTEECCTTCCTTTTTCCTTEE
T ss_pred EEEEEec---CCHHHHHHHHHHHHhCCChhhEEEEE--CCEEcCCCCCHHHcCCCCCCE
Confidence 5666753 57899999999999999887 99999 698886 466654 6664
No 24
>1q1o_A Cell division control protein 24; PB1 domain, PCCR, PC motif, OPCA motif, yeast, cell polarity, protein-protein interaction; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 2kfj_A 2kfk_B
Probab=26.54 E-value=87 Score=22.65 Aligned_cols=41 Identities=5% Similarity=-0.032 Sum_probs=28.3
Q ss_pred ceEEEEEEcCCC----CCCcEEEEECCCCCCCCHHHHHHHHHhcCCCC
Q psy12053 74 ARKVTFFKNGDP----YFPGVEYRFKPGRDIPSLEALQDKLSVRMDLP 117 (167)
Q Consensus 74 aKrI~vYRNGD~----~f~Gv~vvVs~~R~~ksfd~LLd~LTekV~Lp 117 (167)
+-+|.|+-|.|. ...-+.++|++ --+|++|++.|.+|+.++
T Consensus 5 sikVKv~y~~~~~~~~~~d~~~i~V~~---~i~f~~L~~kI~~Kl~~~ 49 (98)
T 1q1o_A 5 SILFRISYNNNSNNTSSSEIFTLLVEK---VWNFDDLIMAINSKISNT 49 (98)
T ss_dssp CEEEEEEECSSCSSCCCCEEEEEEECT---TCCHHHHHHHHHHHHHHH
T ss_pred cEEEEEEecCcccccccCcEEEEEecC---CCCHHHHHHHHHHHHcCC
Confidence 467777767432 11124577776 348999999999999875
No 25
>4egu_A Histidine triad (HIT) protein; structural genomics, center for structural genomics of infec diseases, csgid, HIT domain, unknown function; HET: 5GP; 0.95A {Clostridium difficile}
Probab=24.07 E-value=42 Score=23.43 Aligned_cols=33 Identities=18% Similarity=0.182 Sum_probs=26.5
Q ss_pred CceEEEEEEcCCCCCCcEEEEECCCCCCCCHHHH
Q psy12053 73 RARKVTFFKNGDPYFPGVEYRFKPGRDIPSLEAL 106 (167)
Q Consensus 73 kaKrI~vYRNGD~~f~Gv~vvVs~~R~~ksfd~L 106 (167)
.-..+.+|.+-.+..+|--++|.+ |.+.+|..|
T Consensus 23 e~e~~~af~d~~P~~pgH~LViPk-~H~~~l~dL 55 (119)
T 4egu_A 23 EDDRVLAFNDLNPVAPYHILVVPK-KHYDSLIDI 55 (119)
T ss_dssp ECSSEEEEECSSCSSSEEEEEEES-SCCSSGGGS
T ss_pred ECCCEEEEECCCCCCCceEEEEec-hhhCCHhHC
Confidence 344567899999999999999998 888877654
No 26
>1d4b_A CIDE B, human cell death-inducing effector B; alpha/beta roll, apoptosis; NMR {Homo sapiens} SCOP: d.15.2.1
Probab=23.67 E-value=2.3e+02 Score=21.29 Aligned_cols=54 Identities=19% Similarity=0.192 Sum_probs=39.4
Q ss_pred CCCHHHHHHHHHhcCCCCCcceEEEccCCceecC---ccccccCCeEEEec-CCCccc
Q psy12053 100 IPSLEALQDKLSVRMDLPRGARYVFSMDGVRILT---LDELEDNASYVVSS-YKTFKV 153 (167)
Q Consensus 100 ~ksfd~LLd~LTekV~Lp~GVR~LYT~dG~~V~s---LddLedG~~YVasG-~E~FKk 153 (167)
..+++.|++...+++.+..+++-+..-||..|.+ +.-|.++-..++.. +|...+
T Consensus 53 A~SL~EL~~K~~~~l~l~~~~~lvLeeDGT~VddEeYF~tLp~nT~lmvL~~gq~W~p 110 (122)
T 1d4b_A 53 AATRQELLAKALETLLLNGVLTLVLEEDGTAVDSEDFFQLLEDDTCLMVLQSGQSWSP 110 (122)
T ss_dssp ECCSSTHHHHHHHHHSCCSSCEEEETTTTEEECSTHHHHHSSSCCCCCEECSSCCCCC
T ss_pred cCCHHHHHHHHHHHhccCCCcEEEEEeCCcEEechhHhhcCCCCCEEEEecCCCcccC
Confidence 3589999999999999954577777789999975 34556777666654 555544
No 27
>3ohe_A Histidine triad (HIT) protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-biology; HET: MSE; 1.20A {Marinobacter aquaeolei}
Probab=23.63 E-value=44 Score=24.60 Aligned_cols=29 Identities=17% Similarity=0.122 Sum_probs=22.4
Q ss_pred EEEEEcCCCCCCcEEEEECCCCCCCCHHHH
Q psy12053 77 VTFFKNGDPYFPGVEYRFKPGRDIPSLEAL 106 (167)
Q Consensus 77 I~vYRNGD~~f~Gv~vvVs~~R~~ksfd~L 106 (167)
-.+|-|-|+.++|..+++.+ +.+.+|..|
T Consensus 22 ~~v~l~~~p~~pGh~lV~~k-~h~~~l~dl 50 (137)
T 3ohe_A 22 CDVLLMNDNTWPWVILVPRV-SGIREIYEL 50 (137)
T ss_dssp EEEEEESCTTSCEEEEEESC-TTCCSGGGS
T ss_pred EEEEEcCCCCCCEEEEEecc-cccCChHHC
Confidence 46778889999999888876 678777443
No 28
>3h9d_A ATG8, microtubule-associated protein 1A/1B, light chain putative; autophagy, lipidation, ubiquitin-like, S protein; 2.30A {Trypanosoma brucei} SCOP: d.15.1.0
Probab=23.06 E-value=1.8e+02 Score=21.42 Aligned_cols=57 Identities=18% Similarity=0.247 Sum_probs=38.7
Q ss_pred CcEEEEECCCCCCCCHHHHHHHHHhcCCCCCc-ceEEEccCCceecCccc--------c--ccCCeEEEecCC
Q psy12053 88 PGVEYRFKPGRDIPSLEALQDKLSVRMDLPRG-ARYVFSMDGVRILTLDE--------L--EDNASYVVSSYK 149 (167)
Q Consensus 88 ~Gv~vvVs~~R~~ksfd~LLd~LTekV~Lp~G-VR~LYT~dG~~V~sLdd--------L--edG~~YVasG~E 149 (167)
.-.+++|+. --++.+|...|.++++|..+ .=-||- ++. +.+.++ . +||-.||+.+.|
T Consensus 48 dk~KflVp~---~~tv~qf~~~iRkrl~l~~~~alFl~V-n~~-~p~~~~~m~~lY~~~kd~DGfLyv~Ys~e 115 (119)
T 3h9d_A 48 DRCKFLVPS---DLTVGQFVSVLRKRVQLEAESALFVYT-NDT-VLPSSAQMADIYSKYKDEDGFLYMKYSGE 115 (119)
T ss_dssp SSCEEEEET---TCBHHHHHHHHHHHHTCCTTSCCEEEE-TTE-ECCTTSBHHHHHHHHCCTTSCEEEEEECC
T ss_pred CcceEEcCC---CCCHHHHHHHHHHHhCCCccceEEEEE-CCc-CCCccchHHHHHHHcCCCCCeEEEEEecc
Confidence 345789986 35899999999999998865 334442 343 333322 2 488899988754
No 29
>3n1s_A HIT-like protein HINT; histidine triad nucleotide binding protein, GMP, hydro; HET: 5GP; 1.45A {Escherichia coli} SCOP: d.13.1.0 PDB: 3n1t_A*
Probab=22.96 E-value=44 Score=23.65 Aligned_cols=32 Identities=22% Similarity=0.230 Sum_probs=25.8
Q ss_pred CceEEEEEEcCCCCCCcEEEEECCCCCCCCHHH
Q psy12053 73 RARKVTFFKNGDPYFPGVEYRFKPGRDIPSLEA 105 (167)
Q Consensus 73 kaKrI~vYRNGD~~f~Gv~vvVs~~R~~ksfd~ 105 (167)
.-..+.+|.|-.+.++|--++|.+ |.+.+|..
T Consensus 22 ede~~~af~d~~P~~pgH~LViPk-~Hv~~l~d 53 (119)
T 3n1s_A 22 QDDLVTAFRDISPQAPTHILIIPN-ILIPTVND 53 (119)
T ss_dssp ECSSEEEEECSSCSSSEEEEEEES-SCCCSGGG
T ss_pred ECCCEEEEECCCCCCCCeEEEEeh-hHhCCHhH
Confidence 344578899999999999999998 88877754
No 30
>3oj7_A Putative histidine triad family protein; hydrolase, structural genomics, seattle structural genomics for infectious disease, ssgcid; 1.40A {Entamoeba histolytica} SCOP: d.13.1.0 PDB: 3omf_A* 3oxk_A*
Probab=22.80 E-value=45 Score=23.30 Aligned_cols=33 Identities=21% Similarity=0.270 Sum_probs=26.2
Q ss_pred CceEEEEEEcCCCCCCcEEEEECCCCCCCCHHHH
Q psy12053 73 RARKVTFFKNGDPYFPGVEYRFKPGRDIPSLEAL 106 (167)
Q Consensus 73 kaKrI~vYRNGD~~f~Gv~vvVs~~R~~ksfd~L 106 (167)
.-..+.+|.|-.+..+|--++|.+ |.+.+|..|
T Consensus 26 e~~~~~af~d~~P~~pgH~LViPk-~H~~~l~dL 58 (117)
T 3oj7_A 26 EDDEIFAFKDINPIAPIHILVIPK-QHIASLNEI 58 (117)
T ss_dssp ECSSEEEEECSSCSSSEEEEEEES-SCCCSGGGC
T ss_pred ECCcEEEEECCCCCCCceEEEEec-hHhCCHHHC
Confidence 344567899999999999899987 878777554
No 31
>3o1c_A Histidine triad nucleotide-binding protein 1; hydrolase, HINT protein, HIT protein, adenosine 5'- monophosphoramidase; HET: ADN; 1.08A {Oryctolagus cuniculus} SCOP: d.13.1.1 PDB: 3llj_A* 1rzy_A* 3qgz_A* 3o1z_A 3o1x_A* 4eqe_A* 4eqg_A* 4eqh_A* 3tw2_A* 1kpb_A 1kpf_A* 1kpa_A 1kpc_A 1av5_A* 1kpe_A* 4rhn_A* 3rhn_A* 5rhn_A* 6rhn_A
Probab=22.26 E-value=45 Score=23.75 Aligned_cols=32 Identities=16% Similarity=0.197 Sum_probs=25.8
Q ss_pred CceEEEEEEcCCCCCCcEEEEECCCCCCCCHHH
Q psy12053 73 RARKVTFFKNGDPYFPGVEYRFKPGRDIPSLEA 105 (167)
Q Consensus 73 kaKrI~vYRNGD~~f~Gv~vvVs~~R~~ksfd~ 105 (167)
.-..+.+|.|-.+..+|--++|.+ |.+.+|..
T Consensus 34 e~e~~~af~d~~P~~pgH~LViPk-~H~~~l~d 65 (126)
T 3o1c_A 34 EDDQALAFHDISPQAPTHFLVIPK-KHISQISA 65 (126)
T ss_dssp ECSSEEEEECSSCSSSEEEEEEES-SCCCCGGG
T ss_pred ECCCEEEEECCCCCCCceEEEEec-hHhchHhh
Confidence 344567889999999999999998 88887754
No 32
>2v2f_A Penicillin binding protein 1A; transpeptidase activity, peptidoglycan synthesis, transferase, hydrolase; HET: MES; 1.9A {Streptococcus pneumoniae} PDB: 2zc5_A* 2zc6_A*
Probab=22.05 E-value=39 Score=18.05 Aligned_cols=16 Identities=13% Similarity=0.198 Sum_probs=13.2
Q ss_pred ceEEEccCCceecCcc
Q psy12053 120 ARYVFSMDGVRILTLD 135 (167)
Q Consensus 120 VR~LYT~dG~~V~sLd 135 (167)
--.||+.+|..|..|.
T Consensus 6 ss~IYD~~g~~i~~lg 21 (26)
T 2v2f_A 6 SSKIYDNKNQLIADLG 21 (26)
T ss_pred CCEEEeCCCCEeeecc
Confidence 4689999999988774
No 33
>1ibx_B Chimera of IGG binding protein G and DNA fragmentation factor 45; DFF40, DFF45, protein-protein complex, CIDE, CIDE domain complex; HET: DNA; NMR {Streptococcus SP} SCOP: d.15.2.1
Probab=21.42 E-value=1.5e+02 Score=22.93 Aligned_cols=53 Identities=19% Similarity=0.266 Sum_probs=39.6
Q ss_pred CCCHHHHHHHHHhcCCCCC---cceEEEccCCceecC---ccccccCCeEEEec-CCCcc
Q psy12053 100 IPSLEALQDKLSVRMDLPR---GARYVFSMDGVRILT---LDELEDNASYVVSS-YKTFK 152 (167)
Q Consensus 100 ~ksfd~LLd~LTekV~Lp~---GVR~LYT~dG~~V~s---LddLedG~~YVasG-~E~FK 152 (167)
..|++.|+....+++.++. +++-+..-||..|.+ +.-|.++-..|+.. .|+..
T Consensus 81 A~SL~EL~~K~~~kL~l~~~~~~~~LvLeeDGTeVddEeYF~tLp~nT~LmvL~~gekW~ 140 (145)
T 1ibx_B 81 ASCLEDLRSKACDILAIDKSLTPVTLVLAEDGTIVDDDDYFLCLPSNTKFVALASNEKWA 140 (145)
T ss_dssp CSSHHHHHHHHHHHHTCSCTTSCCEEEETTTCCBCSSHHHHHHSCSSCBEEEECSSCCCC
T ss_pred cCCHHHHHHHHHHHhcCCCCccccEEEEeeCCcEEechhHhhcCCCCCEEEEECCCCccC
Confidence 5799999999999999965 477666789999975 44566777777665 45443
No 34
>1pqs_A Cell division control protein 24; alpha and beta protein, cell cycle; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 1tz1_A
Probab=21.40 E-value=82 Score=21.59 Aligned_cols=39 Identities=8% Similarity=0.151 Sum_probs=26.4
Q ss_pred EEEECCCCCCCCHHHHHHHHHhcCCCC-----Cc-ceEEEcc-CCceec
Q psy12053 91 EYRFKPGRDIPSLEALQDKLSVRMDLP-----RG-ARYVFSM-DGVRIL 132 (167)
Q Consensus 91 ~vvVs~~R~~ksfd~LLd~LTekV~Lp-----~G-VR~LYT~-dG~~V~ 132 (167)
-++|++ --+|++|++.|.+|+++. .+ ++-=|-- ||..|.
T Consensus 5 ~i~V~~---~i~f~~L~~kI~~kl~~~~~~~~~~~~~lkYkDEdGD~Vt 50 (77)
T 1pqs_A 5 TLLVEK---VWNFDDLIMAINSKISNTHNNNISPITKIKYQDEDGDFVV 50 (77)
T ss_dssp EEECTT---CCCSHHHHHHHHHHTTTTTSSCSCSTTCCEEEETTTEEEE
T ss_pred EEEeCC---CCCHHHHHHHHHHHHcccccccccceeEEEEEcCCCCEEE
Confidence 466665 247999999999999975 23 4444543 676554
No 35
>1wpi_A YKR049C, hypothetical 15.6 kDa protein in NAP1-TRK2 intergenic region; structural genomics, OCSP, NESG, protein structure initiative; NMR {Saccharomyces cerevisiae} SCOP: c.47.1.18
Probab=21.26 E-value=2e+02 Score=22.03 Aligned_cols=45 Identities=18% Similarity=0.279 Sum_probs=28.3
Q ss_pred ccCCCCCCCceEEEEEEcCCCC---------------CCcEEEEECCCCCCCCHHHHHHHHHh
Q psy12053 65 KYDNLSYWRARKVTFFKNGDPY---------------FPGVEYRFKPGRDIPSLEALQDKLSV 112 (167)
Q Consensus 65 ~~~~l~~~kaKrI~vYRNGD~~---------------f~Gv~vvVs~~R~~ksfd~LLd~LTe 112 (167)
.+.+|| ..|+.|.+|-|.-.- -.-.+|=|.. + ++|+|+|...-+.
T Consensus 3 lFRsLQ-~qP~~IsiF~n~~~~~~~s~~l~~~L~~~~k~~f~iel~~-k-fPTlDQl~~m~~~ 62 (133)
T 1wpi_A 3 FWKTLQ-RQPRTISLFTNDIASNIKSQKCLQLLKGDVSHRFDVEIAN-R-FPTWDQLQYMRTS 62 (133)
T ss_dssp CSSCCS-SCCCEEEEEECCCSSSTTCCCCCTTTTSSCCCSSEEEEEE-C-CCCHHHHHHHHHS
T ss_pred hHHhhh-cCCceEEEeccCcccchHHHHHHHHhhcccCCccceeccc-c-CCCHHHHHHHHHh
Confidence 445555 566777777765433 1124677754 4 9999999886554
No 36
>3jyu_A Ubiquitin carboxyl-terminal hydrolase; domain in ubiquitin-specific peptidases (DUSP), proto- oncogene, ubiquitin-fold, UBL, protease, thioesterase; HET: 1PS; 2.37A {Mus musculus}
Probab=21.22 E-value=1.2e+02 Score=24.20 Aligned_cols=49 Identities=10% Similarity=0.293 Sum_probs=36.1
Q ss_pred ceEEEEEEcCCCCCCcEEEEECCCCCCCCHHHHHHHHHhcCCCCCc-ceEEEcc
Q psy12053 74 ARKVTFFKNGDPYFPGVEYRFKPGRDIPSLEALQDKLSVRMDLPRG-ARYVFSM 126 (167)
Q Consensus 74 aKrI~vYRNGD~~f~Gv~vvVs~~R~~ksfd~LLd~LTekV~Lp~G-VR~LYT~ 126 (167)
+..+.++++.+... .+.+.+++ ..|+.+|++.+.+.+.++.. =-||+..
T Consensus 139 P~~l~l~~~~~~~~-~~~~~~Sk---~~ti~~l~~~~~~~~~i~~~~~~RLW~~ 188 (231)
T 3jyu_A 139 LLELKLCENSDPTN-VLSCHFSK---ADTIATIEKEMRKLFNIPAERETRLWNK 188 (231)
T ss_dssp CEEEEEEETTEEEE-EEEEEECT---TCBHHHHHHHHHHHTTCCTTSCEEEEEC
T ss_pred cceEEEEecCCCCc-eEEEEecc---cCcHHHHHHHHHHHhCCCCCCeEEEEEe
Confidence 55778888887533 23455674 68999999999999999876 3566665
No 37
>3p0t_A Uncharacterized protein; ssgcid, HIT-like protein, mycobacerium paratuberculosis, STR genomics; 1.90A {Mycobacterium avium subsp}
Probab=20.73 E-value=50 Score=23.73 Aligned_cols=33 Identities=15% Similarity=0.213 Sum_probs=26.1
Q ss_pred CceEEEEEEcCCCCCCcEEEEECCCCCCCCHHHH
Q psy12053 73 RARKVTFFKNGDPYFPGVEYRFKPGRDIPSLEAL 106 (167)
Q Consensus 73 kaKrI~vYRNGD~~f~Gv~vvVs~~R~~ksfd~L 106 (167)
.-..+.+|.+-.+.++|--++|.+ |.+.+|..|
T Consensus 24 e~~~~~af~d~~P~~pgH~LViPk-~H~~~l~dL 56 (138)
T 3p0t_A 24 EDDDVVAFLTIEPMTQGHTLVVPR-EEIDNWQDV 56 (138)
T ss_dssp ECSSEEEEECSSCSSTTCEEEEES-SCCCCGGGS
T ss_pred eCCCEEEEecCCCCCCcEEEEEEh-HHhCchhhC
Confidence 344567889999999999999998 888877543
No 38
>2cx6_A Hypothetical protein YHCO; barstar, ribonuclease inhibitor, RSGI, structural genomics; 2.43A {Escherichia coli} SCOP: c.9.1.1
Probab=20.71 E-value=1e+02 Score=21.24 Aligned_cols=26 Identities=27% Similarity=0.353 Sum_probs=19.1
Q ss_pred EEEECCCCCCCCHHHHHHHHHhcCCCC
Q psy12053 91 EYRFKPGRDIPSLEALQDKLSVRMDLP 117 (167)
Q Consensus 91 ~vvVs~~R~~ksfd~LLd~LTekV~Lp 117 (167)
.+.|.- +.+.+.+.|++.+.+++.+|
T Consensus 3 ~~~iD~-~~i~~~~~f~~~~~~~~~~p 28 (90)
T 2cx6_A 3 IYTFDF-DEIESQEDFYRDFSQTFGLA 28 (90)
T ss_dssp EEEEET-TSCCSHHHHHHHHHHHTTCC
T ss_pred EEEEeC-CCCCCHHHHHHHHHHHhCCc
Confidence 355654 56788888888888888887
No 39
>3m95_A Autophagy related protein ATG8; alpha slash beta, receptor, transport protein; 2.40A {Bombyx mori} SCOP: d.15.1.3
Probab=20.38 E-value=2.7e+02 Score=20.67 Aligned_cols=56 Identities=21% Similarity=0.215 Sum_probs=38.4
Q ss_pred cEEEEECCCCCCCCHHHHHHHHHhcCCCCCc-ceEEEccCCceecCcc----cc------ccCCeEEEecCC
Q psy12053 89 GVEYRFKPGRDIPSLEALQDKLSVRMDLPRG-ARYVFSMDGVRILTLD----EL------EDNASYVVSSYK 149 (167)
Q Consensus 89 Gv~vvVs~~R~~ksfd~LLd~LTekV~Lp~G-VR~LYT~dG~~V~sLd----dL------edG~~YVasG~E 149 (167)
-.+++|+. --++.+|+..|.++++|+.. .=-||- ++. +.+.+ +| +||-.||+.+.|
T Consensus 54 K~KflVp~---~~tv~qf~~~IRkrl~L~~~~alFl~V-nn~-lPs~s~~m~~lY~~~kdeDGfLY~~Ys~e 120 (125)
T 3m95_A 54 KKKYLVPS---DLTVGQFYFLIRKRIHLRPEDALFFFV-NNV-IPPTSATMGSLYQEHHDEDFFLYIAFSDE 120 (125)
T ss_dssp CCEEEEET---TSBHHHHHHHHHHHTTCCTTSCCEEEB-TTB-CCCTTSBHHHHHHHHCCTTSCEEEEEESS
T ss_pred CCEEEcCC---CCEeeeehhhhHhhcCCCccccEEEEE-CCc-cCCccchHHHHHHHcCCCCCeEEEEecCc
Confidence 35789986 35899999999999999765 334443 332 32322 22 589999988754
Done!