RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy12053
(167 letters)
>1mg4_A Doublecortin, doublecortin-like kinase (N-terminal domain); DCX
domain, microtubule bundling, cortex development,
transferase; 1.50A {Homo sapiens} SCOP: d.15.11.1 PDB:
1mfw_A 1mjd_A 2bqq_A 2xrp_I*
Length = 113
Score = 86.8 bits (215), Expect = 5e-23
Identities = 36/95 (37%), Positives = 57/95 (60%), Gaps = 6/95 (6%)
Query: 63 ESKYDNLSYWRARKVTFFKNGDPYFPGVEYRFKPGRDIPSLEALQD----KLSVRMDLPR 118
+ ++ S +A+KV F++NGD YF G+ Y P R S EAL LS ++LP+
Sbjct: 4 DPEFTLSSEKKAKKVRFYRNGDRYFKGIVYAISPDR-FRSFEALLADLTRTLSDNVNLPQ 62
Query: 119 GARYVFSMDGV-RILTLDELEDNASYVVSSYKTFK 152
G R ++++DG+ +I +LD+L + SYV S + FK
Sbjct: 63 GVRTIYTIDGLKKISSLDQLVEGESYVCGSIEPFK 97
>1uf0_A Serine/threonine-protein kinase dcamkl1; structural genomics,
ubiquitin-like fold, microtubule- binding; NMR {Homo
sapiens} SCOP: d.15.11.1
Length = 116
Score = 82.3 bits (203), Expect = 4e-21
Identities = 36/90 (40%), Positives = 54/90 (60%), Gaps = 6/90 (6%)
Query: 68 NLSYWRARKVTFFKNGDPYFPGVEYRFKPGRDIPSLEALQDKL----SVRMDLPRGARYV 123
S +A+KV F++NGD YF G+ Y P R S EAL L S ++LP+G R +
Sbjct: 4 GSSGKKAKKVRFYRNGDRYFKGIVYAISPDR-FRSFEALLADLTRTLSDNVNLPQGVRTI 62
Query: 124 FSMDGV-RILTLDELEDNASYVVSSYKTFK 152
+++DG+ +I +LD+L + SYV S + FK
Sbjct: 63 YTIDGLKKISSLDQLVEGESYVCGSIEPFK 92
>2dnf_A Doublecortin domain-containing protein 2; structural genomics,
riken structural genomics/proteomics initiative, RSGI,
NPPSFA; NMR {Homo sapiens}
Length = 108
Score = 78.3 bits (193), Expect = 9e-20
Identities = 16/81 (19%), Positives = 33/81 (40%), Gaps = 2/81 (2%)
Query: 73 RARKVTFFKNGDPYFPGVEYRFKPGRDIPSLEALQDKLSVRMDLPRGA-RYVFSMDGVRI 131
+ NGD P P + + + + ++ ++ L GA +++++G +
Sbjct: 13 EPCTIFLIANGDLINPASRLLI-PRKTLNQWDHVLQMVTEKITLRSGAVHRLYTLEGKLV 71
Query: 132 LTLDELEDNASYVVSSYKTFK 152
+ ELE+ YV FK
Sbjct: 72 ESGAELENGQFYVAVGRDKFK 92
>2xn2_A Alpha-galactosidase; hydrolase, glycosidase; HET: SME GLA IMD;
1.58A {Lactobacillus acidophilus ncfm} PDB: 2xn1_A*
2xn0_A*
Length = 732
Score = 30.4 bits (68), Expect = 0.27
Identities = 21/132 (15%), Positives = 36/132 (27%), Gaps = 18/132 (13%)
Query: 26 YWGSRPPSPSGGDNASETSSVMPPPPPQQTQRPKSRAESKYDNLSYWRARKVTFFKNGDP 85
Y+G + + P+ R SR ++ + D
Sbjct: 38 YFGGAVKNYNNQLKYPRLDRGFSGNLPESLDRTFSRDSLP---------KEYSSAGEMDF 88
Query: 86 YFPGVEYRFKPGRDIPSLE----ALQDKLSVRMDLPRGARYVFSMDGVRILTLDELEDNA 141
+ P R G + L ++D LP + D + L + LED
Sbjct: 89 HTPATIVRNPDGSNALFLAYKSYKIEDGKPDLKGLP--HSWTKEDDEAQTLIV-TLEDKV 145
Query: 142 S--YVVSSYKTF 151
S Y +
Sbjct: 146 SKLEYDLLYTIY 157
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 30.2 bits (67), Expect = 0.31
Identities = 14/87 (16%), Positives = 26/87 (29%), Gaps = 18/87 (20%)
Query: 67 DNLSYW----------RARKVTFFKNGDPYFPGVEYRF---KPGRDIPSLEALQDKLSVR 113
D Y ++T F+ + ++RF K D + A L+
Sbjct: 470 DQYFYSHIGHHLKNIEHPERMTLFRM--VFL---DFRFLEQKIRHDSTAWNASGSILNTL 524
Query: 114 MDLPRGARYVFSMDGVRILTLDELEDN 140
L Y+ D ++ + D
Sbjct: 525 QQLKFYKPYICDNDPKYERLVNAILDF 551
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 29.2 bits (65), Expect = 0.76
Identities = 19/78 (24%), Positives = 31/78 (39%), Gaps = 17/78 (21%)
Query: 63 ESKYDNLSYWRARKVTFFKNGDPYFPGVE-YRFKPGRDIPSLEALQDKLSVRMDLPRGAR 121
ES + ++ +A V FF GV Y P +P L+D L +P
Sbjct: 290 ESFFVSVR--KAITVLFFI-------GVRCYEAYPNTSLPP-SILEDSLENNEGVPS--- 336
Query: 122 YVFSMDGVRILTLDELED 139
M + LT ++++D
Sbjct: 337 ---PMLSISNLTQEQVQD 351
>1p9e_A Methyl parathion hydrolase; Zn containing; 2.40A {Pseudomonas SP}
SCOP: d.157.1.5
Length = 331
Score = 27.0 bits (60), Expect = 3.2
Identities = 9/42 (21%), Positives = 15/42 (35%), Gaps = 1/42 (2%)
Query: 57 RPKSRAESKYDNLS-YWRARKVTFFKNGDPYFPGVEYRFKPG 97
K + +L+ Y +A K F PG++ G
Sbjct: 192 ESKGFFKGAMASLNPYVKAGKFKPFSGNTDLVPGIKALASHG 233
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1;
transferase, ATP sulfurylase, APS kinase, PAPS; HET:
ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5
c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Length = 630
Score = 26.7 bits (59), Expect = 4.4
Identities = 4/37 (10%), Positives = 12/37 (32%), Gaps = 2/37 (5%)
Query: 61 RAESKYDNLSYWRARKVTFFKNGDPYFPGVEYRFKPG 97
R +++ R + + P ++ + G
Sbjct: 339 RNPEFFEHRKEERCARQ--WGTTCKNHPYIKMVMEQG 373
>3d03_A Phosphohydrolase; glycerophosphodiesterase, metallohydrolase,
phosphatase, metal ION; 1.90A {Enterobacter aerogenes}
SCOP: d.159.1.11 PDB: 2zoa_A 2zo9_B 2dxn_A 2dxl_A
Length = 274
Score = 25.5 bits (56), Expect = 8.1
Identities = 8/40 (20%), Positives = 10/40 (25%)
Query: 104 EALQDKLSVRMDLPRGARYVFSMDGVRILTLDELEDNASY 143
E LQ R R+L +D S
Sbjct: 89 EYLQPLCPQLGSDANNMRCAVDDFATRLLFIDSSRAGTSK 128
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.316 0.135 0.411
Gapped
Lambda K H
0.267 0.0521 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,625,693
Number of extensions: 150994
Number of successful extensions: 449
Number of sequences better than 10.0: 1
Number of HSP's gapped: 444
Number of HSP's successfully gapped: 28
Length of query: 167
Length of database: 6,701,793
Length adjustment: 87
Effective length of query: 80
Effective length of database: 4,272,666
Effective search space: 341813280
Effective search space used: 341813280
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 54 (25.1 bits)