RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy12053
         (167 letters)



>d1mg4a_ d.15.11.1 (A:) Doublecortin-like kinase Dclk {Human (Homo
           sapiens) [TaxId: 9606]}
          Length = 101

 Score = 77.9 bits (192), Expect = 5e-20
 Identities = 34/85 (40%), Positives = 53/85 (62%), Gaps = 6/85 (7%)

Query: 73  RARKVTFFKNGDPYFPGVEYRFKPGRDIPSLEALQD----KLSVRMDLPRGARYVFSMDG 128
           +A+KV F++NGD YF G+ Y   P R   S EAL       LS  ++LP+G R ++++DG
Sbjct: 2   KAKKVRFYRNGDRYFKGIVYAISPDR-FRSFEALLADLTRTLSDNVNLPQGVRTIYTIDG 60

Query: 129 VRILT-LDELEDNASYVVSSYKTFK 152
           ++ ++ LD+L +  SYV  S + FK
Sbjct: 61  LKKISSLDQLVEGESYVCGSIEPFK 85


>d1j8ca_ d.15.1.1 (A:) Ubiquitin-like N-terminal domain of PLIC-2
          {Human (Homo sapiens) [TaxId: 9606]}
          Length = 103

 Score = 24.9 bits (54), Expect = 3.1
 Identities = 10/24 (41%), Positives = 13/24 (54%)

Query: 29 SRPPSPSGGDNASETSSVMPPPPP 52
          S PP PS G  A++ S+  P  P 
Sbjct: 8  SGPPRPSRGPAAAQGSAAAPAEPK 31


>d2o3ia1 e.73.1.1 (A:2-390) Hypothetical protein CV3147
           {Chromobacterium violaceum [TaxId: 536]}
          Length = 389

 Score = 24.5 bits (53), Expect = 8.1
 Identities = 6/18 (33%), Positives = 11/18 (61%)

Query: 129 VRILTLDELEDNASYVVS 146
           VR++ +DE  D    +V+
Sbjct: 48  VRVVDVDEATDGDCVMVA 65


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.316    0.135    0.411 

Gapped
Lambda     K      H
   0.267   0.0575    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 646,556
Number of extensions: 29186
Number of successful extensions: 87
Number of sequences better than 10.0: 1
Number of HSP's gapped: 84
Number of HSP's successfully gapped: 8
Length of query: 167
Length of database: 2,407,596
Length adjustment: 79
Effective length of query: 88
Effective length of database: 1,322,926
Effective search space: 116417488
Effective search space used: 116417488
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 49 (23.0 bits)