BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy12056
(200 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3EIF|A Chain A, 1.9 Angstrom Crystal Structure Of The Active Form Of The
C5a Peptidase From Streptococcus Pyogenes (Scpa)
Length = 936
Score = 43.5 bits (101), Expect = 8e-05, Method: Composition-based stats.
Identities = 30/77 (38%), Positives = 44/77 (57%), Gaps = 9/77 (11%)
Query: 69 IKGHIALIERGECSFVHKAMIAESIGARGVIISDNDPDSDDFYVEMIS-DQSKREIHIPV 127
+KG IALIERG+ F K A+ GA GV+I DN F +E+ + DQ +P
Sbjct: 288 VKGKIALIERGDIDFKDKIANAKKAGAVGVLIYDN--QDKGFPIELPNVDQ------MPA 339
Query: 128 AFLVGKNGRVIKNALKR 144
AF+ K+G ++K+ K+
Sbjct: 340 AFISRKDGLLLKDNSKK 356
>pdb|1XF1|A Chain A, Structure Of C5a Peptidase- A Key Virulence Factor From
Streptococcus
pdb|1XF1|B Chain B, Structure Of C5a Peptidase- A Key Virulence Factor From
Streptococcus
Length = 926
Score = 34.3 bits (77), Expect = 0.042, Method: Composition-based stats.
Identities = 29/73 (39%), Positives = 41/73 (56%), Gaps = 9/73 (12%)
Query: 69 IKGHIALIERGECSFVHKAMIAESIGARGVIISDNDPDSDDFYVEMIS-DQSKREIHIPV 127
+KG IALIERG+ F K A+ GA GV+I DN F +E+ + DQ P
Sbjct: 279 VKGKIALIERGDIDFKDKIAKAKKAGAVGVLIYDN--QDKGFPIELPNVDQX------PA 330
Query: 128 AFLVGKNGRVIKN 140
AF+ K+G ++K+
Sbjct: 331 AFISRKDGLLLKD 343
>pdb|2EK8|A Chain A, Aminopeptidase From Aneurinibacillus Sp. Strain Am-1
pdb|2EK9|A Chain A, Aminopeptidase From Aneurinibacillus Sp. Strain Am-1 With
Bestatin
Length = 421
Score = 33.5 bits (75), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 22/45 (48%)
Query: 59 SCTHPTNANTIKGHIALIERGECSFVHKAMIAESIGARGVIISDN 103
T + G IALI+RG SF K A GA+ VII +N
Sbjct: 103 GTTADVAGKDLNGKIALIQRGNISFADKVRNAAKQGAKAVIIYNN 147
>pdb|2M2B|A Chain A, Nmr Structure Of The Rrm2 Domain Of The Protein Rbm10 From
Homo Sapiens
Length = 131
Score = 30.0 bits (66), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 27/57 (47%), Gaps = 2/57 (3%)
Query: 126 PVAFLVGKNGRVIKNALKRLNMDYALINIPV--NLTYVPIHKINQPPLKMDYALINI 180
P A L N RVIK+ +LN +A I + + I + PPL +D IN+
Sbjct: 46 PYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTIEAAQLLQILQALHPPLTIDGKTINV 102
>pdb|3G2O|A Chain A, Crystal Structure Of The Glycopeptide N-methyltransferase
Mtfa Complexed With (s)-adenosyl-l-methionine (sam)
pdb|3G2O|B Chain B, Crystal Structure Of The Glycopeptide N-methyltransferase
Mtfa Complexed With (s)-adenosyl-l-methionine (sam)
pdb|3G2P|A Chain A, Crystal Structure Of The Glycopeptide N-Methyltransferase
Mtfa Complexed With (S)-Adenosyl-L-Homocysteine (Sah)
pdb|3G2P|B Chain B, Crystal Structure Of The Glycopeptide N-Methyltransferase
Mtfa Complexed With (S)-Adenosyl-L-Homocysteine (Sah)
pdb|3G2Q|A Chain A, Crystal Structure Of The Glycopeptide N-Methyltransferase
Mtfa Complexed With Sinefungin
pdb|3G2Q|B Chain B, Crystal Structure Of The Glycopeptide N-Methyltransferase
Mtfa Complexed With Sinefungin
Length = 299
Score = 28.9 bits (63), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 22/42 (52%)
Query: 76 IERGECSFVHKAMIAESIGARGVIISDNDPDSDDFYVEMISD 117
+ERG H ++ S+G RGV+ D + D Y ++I D
Sbjct: 24 LERGPVRTPHADVLLASVGERGVLCDFYDEGAADTYRDLIQD 65
>pdb|3G2M|A Chain A, Crystal Structure Of The Glycopeptide N-Methyltransferase
Mtfa
pdb|3G2M|B Chain B, Crystal Structure Of The Glycopeptide N-Methyltransferase
Mtfa
Length = 299
Score = 28.5 bits (62), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 22/42 (52%)
Query: 76 IERGECSFVHKAMIAESIGARGVIISDNDPDSDDFYVEMISD 117
+ERG H ++ S+G RGV+ D + D Y ++I D
Sbjct: 24 LERGPVRTPHADVLLASVGERGVLCDFYDEGAADTYRDLIQD 65
>pdb|3F83|A Chain A, Structure Of Fusion Complex Of The Minor Pilin Cfae And
Major Pilin Cfab Of CfaI PILI FROM ETEC E. COLI
Length = 519
Score = 28.1 bits (61), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 12/33 (36%), Positives = 17/33 (51%)
Query: 102 DNDPDSDDFYVEMISDQSKREIHIPVAFLVGKN 134
DN FY++ I+D SK ++ L GKN
Sbjct: 235 DNSKSDGKFYLKKINDDSKELVYTLSLLLAGKN 267
>pdb|2HB0|A Chain A, Crystal Structure Of Cfae, The Adhesive Subunit Of CfaI
Fimbria Of Enterotoxigenic Escherichia Coli
pdb|2HB0|B Chain B, Crystal Structure Of Cfae, The Adhesive Subunit Of CfaI
Fimbria Of Enterotoxigenic Escherichia Coli
Length = 369
Score = 28.1 bits (61), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 12/33 (36%), Positives = 17/33 (51%)
Query: 102 DNDPDSDDFYVEMISDQSKREIHIPVAFLVGKN 134
DN FY++ I+D SK ++ L GKN
Sbjct: 235 DNSKSDGKFYLKKINDDSKELVYTLSLLLAGKN 267
>pdb|3VAC|A Chain A, Crystal Structure Of The Cfa/i Enterotoxigenic E. Coli
Adhesin Cfae Mutant G168d
pdb|3VAC|B Chain B, Crystal Structure Of The Cfa/i Enterotoxigenic E. Coli
Adhesin Cfae Mutant G168d
Length = 356
Score = 27.7 bits (60), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 12/33 (36%), Positives = 17/33 (51%)
Query: 102 DNDPDSDDFYVEMISDQSKREIHIPVAFLVGKN 134
DN FY++ I+D SK ++ L GKN
Sbjct: 235 DNSKSDGKFYLKKINDDSKELVYTLSLLLAGKN 267
>pdb|1DE4|C Chain C, Hemochromatosis Protein Hfe Complexed With Transferrin
Receptor
pdb|1DE4|F Chain F, Hemochromatosis Protein Hfe Complexed With Transferrin
Receptor
pdb|1DE4|I Chain I, Hemochromatosis Protein Hfe Complexed With Transferrin
Receptor
pdb|3KAS|A Chain A, Machupo Virus Gp1 Bound To Human Transferrin Receptor 1
Length = 640
Score = 27.7 bits (60), Expect = 4.1, Method: Composition-based stats.
Identities = 12/32 (37%), Positives = 19/32 (59%)
Query: 69 IKGHIALIERGECSFVHKAMIAESIGARGVII 100
+ G I ++ G+ +F K AES+ A GV+I
Sbjct: 130 VNGSIVIVRAGKITFAEKVANAESLNAIGVLI 161
>pdb|1CX8|A Chain A, Crytal Structure Of The Ectodomain Of Human Transferrin
Receptor
pdb|1CX8|B Chain B, Crytal Structure Of The Ectodomain Of Human Transferrin
Receptor
pdb|1CX8|C Chain C, Crytal Structure Of The Ectodomain Of Human Transferrin
Receptor
pdb|1CX8|D Chain D, Crytal Structure Of The Ectodomain Of Human Transferrin
Receptor
pdb|1CX8|E Chain E, Crytal Structure Of The Ectodomain Of Human Transferrin
Receptor
pdb|1CX8|F Chain F, Crytal Structure Of The Ectodomain Of Human Transferrin
Receptor
pdb|1CX8|G Chain G, Crytal Structure Of The Ectodomain Of Human Transferrin
Receptor
pdb|1CX8|H Chain H, Crytal Structure Of The Ectodomain Of Human Transferrin
Receptor
pdb|1SUV|A Chain A, Structure Of Human Transferrin Receptor-transferrin
Complex
pdb|1SUV|B Chain B, Structure Of Human Transferrin Receptor-transferrin
Complex
pdb|2NSU|A Chain A, Crystal Structure Of The Ectodomain Of Human Transferrin
Receptor Fitted Into A Cryo-Em Reconstruction Of Canine
Parvovirus And Feline Transferrin Receptor Complex
pdb|2NSU|B Chain B, Crystal Structure Of The Ectodomain Of Human Transferrin
Receptor Fitted Into A Cryo-Em Reconstruction Of Canine
Parvovirus And Feline Transferrin Receptor Complex
Length = 639
Score = 27.7 bits (60), Expect = 4.1, Method: Composition-based stats.
Identities = 12/32 (37%), Positives = 19/32 (59%)
Query: 69 IKGHIALIERGECSFVHKAMIAESIGARGVII 100
+ G I ++ G+ +F K AES+ A GV+I
Sbjct: 129 VNGSIVIVRAGKITFAEKVANAESLNAIGVLI 160
>pdb|3S9L|A Chain A, Complex Between Transferrin Receptor 1 And Transferrin
With Iron In The N-Lobe, Cryocooled 2
pdb|3S9L|B Chain B, Complex Between Transferrin Receptor 1 And Transferrin
With Iron In The N-Lobe, Cryocooled 2
pdb|3S9M|A Chain A, Complex Between Transferrin Receptor 1 And Transferrin
With Iron In The N-Lobe, Cryocooled 1
pdb|3S9M|B Chain B, Complex Between Transferrin Receptor 1 And Transferrin
With Iron In The N-Lobe, Cryocooled 1
pdb|3S9N|A Chain A, Complex Between Transferrin Receptor 1 And Transferrin
With Iron In The N-Lobe, Room Temperature
pdb|3S9N|B Chain B, Complex Between Transferrin Receptor 1 And Transferrin
With Iron In The N-Lobe, Room Temperature
Length = 654
Score = 27.7 bits (60), Expect = 4.4, Method: Composition-based stats.
Identities = 12/32 (37%), Positives = 19/32 (59%)
Query: 69 IKGHIALIERGECSFVHKAMIAESIGARGVII 100
+ G I ++ G+ +F K AES+ A GV+I
Sbjct: 144 VNGSIVIVRAGKITFAEKVANAESLNAIGVLI 175
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.138 0.419
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,787,506
Number of Sequences: 62578
Number of extensions: 214137
Number of successful extensions: 496
Number of sequences better than 100.0: 29
Number of HSP's better than 100.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 470
Number of HSP's gapped (non-prelim): 31
length of query: 200
length of database: 14,973,337
effective HSP length: 94
effective length of query: 106
effective length of database: 9,091,005
effective search space: 963646530
effective search space used: 963646530
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 49 (23.5 bits)