Query psy12056
Match_columns 200
No_of_seqs 218 out of 1388
Neff 7.3
Searched_HMMs 46136
Date Fri Aug 16 17:30:30 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy12056.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/12056hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3920|consensus 100.0 2.1E-35 4.5E-40 227.5 4.7 162 11-174 30-193 (193)
2 cd02127 PA_hPAP21_like PA_hPAP 99.9 3.6E-26 7.9E-31 172.2 14.9 117 35-153 1-117 (118)
3 cd02126 PA_EDEM3_like PA_EDEM3 99.9 8.1E-25 1.7E-29 166.7 14.3 120 30-151 2-125 (126)
4 cd02132 PA_GO-like PA_GO-like: 99.9 2.7E-22 5.7E-27 155.2 16.4 119 24-149 15-136 (139)
5 cd04813 PA_1 PA_1: Protease-as 99.9 4E-22 8.8E-27 149.9 12.0 107 30-144 5-111 (117)
6 cd02125 PA_VSR PA_VSR: Proteas 99.9 7.4E-22 1.6E-26 150.5 13.3 110 35-150 1-125 (127)
7 cd02123 PA_C_RZF_like PA_C-RZF 99.9 1.3E-21 2.7E-26 153.7 14.2 116 26-147 22-142 (153)
8 cd02122 PA_GRAIL_like PA _GRAI 99.9 4.3E-21 9.4E-26 148.2 14.2 113 32-151 19-137 (138)
9 cd02129 PA_hSPPL_like PA_hSPPL 99.9 1.8E-21 3.8E-26 146.7 11.5 95 47-146 20-116 (120)
10 cd04818 PA_subtilisin_1 PA_sub 99.9 2.2E-20 4.8E-25 140.3 13.9 114 32-150 2-116 (118)
11 cd04816 PA_SaNapH_like PA_SaNa 99.8 1.7E-18 3.8E-23 130.8 14.1 101 47-150 17-120 (122)
12 cd02130 PA_ScAPY_like PA_ScAPY 99.8 5.7E-18 1.2E-22 127.9 12.5 99 47-150 22-120 (122)
13 cd02124 PA_PoS1_like PA_PoS1_l 99.7 1.3E-16 2.8E-21 121.9 11.6 89 54-150 38-127 (129)
14 cd04817 PA_VapT_like PA_VapT_l 99.7 4E-16 8.6E-21 120.5 12.1 96 47-147 36-136 (139)
15 PF02225 PA: PA domain; Inter 99.7 6.7E-17 1.4E-21 117.1 6.3 92 47-142 6-101 (101)
16 cd00538 PA PA: Protease-associ 99.7 1.3E-15 2.8E-20 114.3 10.8 93 55-150 28-124 (126)
17 cd02133 PA_C5a_like PA_C5a_lik 99.6 8.9E-15 1.9E-19 113.4 12.9 94 47-154 26-120 (143)
18 KOG4628|consensus 99.6 8.5E-15 1.8E-19 127.4 12.6 136 22-174 30-169 (348)
19 cd02120 PA_subtilisin_like PA_ 99.6 8.3E-15 1.8E-19 110.5 10.1 88 57-152 37-126 (126)
20 cd04819 PA_2 PA_2: Protease-as 99.5 1.1E-12 2.3E-17 100.0 11.8 100 47-149 23-124 (127)
21 KOG2442|consensus 99.5 1.9E-13 4E-18 122.0 8.6 120 28-154 55-177 (541)
22 cd04815 PA_M28_2 PA_M28_2: Pro 99.3 1.1E-11 2.3E-16 95.3 8.3 101 47-150 17-132 (134)
23 cd02128 PA_TfR PA_TfR: Proteas 99.2 1.5E-10 3.3E-15 93.1 8.8 97 47-145 29-156 (183)
24 cd02121 PA_GCPII_like PA_GCPII 98.8 2.2E-08 4.7E-13 83.0 9.6 97 47-146 45-191 (220)
25 cd04814 PA_M28_1 PA_M28_1: Pro 98.8 4.5E-08 9.8E-13 75.9 8.3 92 47-141 20-134 (142)
26 cd04822 PA_M28_1_3 PA_M28_1_3: 98.7 2.8E-07 6.1E-12 72.2 11.6 93 47-144 20-134 (151)
27 cd04820 PA_M28_1_1 PA_M28_1_1: 98.6 1E-07 2.3E-12 73.5 7.3 59 47-105 22-96 (137)
28 cd02131 PA_hNAALADL2_like PA_h 98.6 1.9E-07 4.2E-12 72.8 7.9 98 47-146 15-141 (153)
29 cd04821 PA_M28_1_2 PA_M28_1_2: 97.3 0.00061 1.3E-08 53.8 5.7 58 47-105 22-103 (157)
30 KOG3920|consensus 93.8 0.026 5.5E-07 44.5 0.9 23 176-198 169-191 (193)
31 KOG2195|consensus 84.8 1.2 2.5E-05 43.2 4.1 59 47-105 158-219 (702)
32 COG4882 Predicted aminopeptida 81.6 3.4 7.5E-05 37.1 5.4 71 67-140 86-161 (486)
33 cd03029 GRX_hybridPRX5 Glutare 46.5 52 0.0011 21.4 4.5 26 72-97 2-28 (72)
34 PF08029 HisG_C: HisG, C-termi 39.8 61 0.0013 22.2 4.0 31 71-103 39-72 (75)
35 cd00860 ThrRS_anticodon ThrRS 29.7 1.5E+02 0.0032 19.7 4.8 34 71-104 28-61 (91)
36 TIGR02190 GlrX-dom Glutaredoxi 27.1 1.1E+02 0.0024 20.3 3.7 31 69-99 6-37 (79)
37 cd03028 GRX_PICOT_like Glutare 24.1 1.9E+02 0.0041 19.8 4.5 71 70-145 7-87 (90)
38 PF13114 RecO_N_2: RecO N term 21.8 91 0.002 21.3 2.3 31 4-34 6-36 (71)
39 TIGR01368 CPSaseIIsmall carbam 21.7 84 0.0018 28.0 2.8 104 47-153 22-129 (358)
40 cd01356 AcnX_swivel Putative A 20.8 2.4E+02 0.0053 21.2 4.7 37 66-102 39-78 (123)
No 1
>KOG3920|consensus
Probab=100.00 E-value=2.1e-35 Score=227.50 Aligned_cols=162 Identities=41% Similarity=0.716 Sum_probs=151.2
Q ss_pred ccceeEEEeCCCccceeeeccccCCcCCCCCCCcccceEEEEeCCCCCCCCCCCCCCCccceEEEEEeCCCCHHHHHHHH
Q psy12056 11 GENTYFEIIQPEELRYTFKIRPAKDFGSSFNGSFSGEKIRMVPANPPWSCTHPTNANTIKGHIALIERGECSFVHKAMIA 90 (200)
Q Consensus 11 ~~~~~~~V~~p~~l~~~~~~~~a~dFG~~~~~~~~~~~~~Lv~~~~~~aC~~~~~~~~v~gkIvLv~RG~Csf~~Kv~~A 90 (200)
.|+++|+|++|.+++|+|+..+|+|||..|+.++. +.+||.++|..||+.+.|.....|.|+|++||+|||..|.+++
T Consensus 30 qD~~~F~vlsP~~l~Yty~~~pAkdfG~~F~~r~e--~~~lV~adPp~aC~elrN~~f~~d~vaL~eRGeCSFl~Ktl~~ 107 (193)
T KOG3920|consen 30 QDNMLFTVLSPYTLAYTYQMKPAKDFGVHFPDRFE--NLELVLADPPHACEELRNEIFAPDSVALMERGECSFLVKTLNG 107 (193)
T ss_pred cceEEEEecCcccEEEEEEecchhhhccccchhhc--CcceeecCChhHHHHHhhcccCCCcEEEEecCCceeeehhhhh
Confidence 47789999999999999999999999999999886 7899999999999999888888999999999999999999999
Q ss_pred HHcCCcEEEEEeCCCCCCcc--eeeeccCCCCCccceeEEEeCHHHHHHHHHHHhcCCCeEEEEEEeecceeeccccCCC
Q psy12056 91 ESIGARGVIISDNDPDSDDF--YVEMISDQSKREIHIPVAFLVGKNGRVIKNALKRLNMDYALINIPVNLTYVPIHKINQ 168 (200)
Q Consensus 91 q~aGA~avIi~n~~~~~~~~--~~~m~~~~~~~~~~IP~v~Is~~dG~~L~~~l~~~~~~~a~I~~~~~~~~~~~~~~~~ 168 (200)
+++||.++||.++.....+. ++.|..|++..+..||++++-..+|-.++..|+.-..+.|.|++|||.|+.|..+..|
T Consensus 108 e~aGa~aiiitd~~~~~~sf~~YveMI~D~sq~~AniPa~fllg~~Gy~ir~sL~r~~r~ha~i~IPVn~t~~P~~~~~~ 187 (193)
T KOG3920|consen 108 EKAGATAIIITDSQNYEYSFHQYVEMIPDESQDRANIPAVFLLGVTGYYIRVSLKRYFRDHAKIDIPVNRTYAPWVHHQK 187 (193)
T ss_pred hhcCceEEEEecCCCCchhHHHHHHhcCcccccccCCceEEEeccceEEEehhHHHhCCccEEEecccccccCCchhhcC
Confidence 99999999999887665554 6789999888899999999999999999999999999999999999999999989999
Q ss_pred CCCccc
Q psy12056 169 PPLKMD 174 (200)
Q Consensus 169 ~~~~~w 174 (200)
+||+.|
T Consensus 188 pPW~~W 193 (193)
T KOG3920|consen 188 PPWEIW 193 (193)
T ss_pred CCCcCC
Confidence 999998
No 2
>cd02127 PA_hPAP21_like PA_hPAP21_like: Protease-associated domain containing proteins like the human secreted glycoprotein hPAP21 (human protease-associated domain-containing protein, 21kDa). This group contains various PA domain-containing proteins similar to hPAP21. Complex N-glycosylation may be required for the secretion of hPAP21. The significance of the PA domain to hPAP21 has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=99.94 E-value=3.6e-26 Score=172.20 Aligned_cols=117 Identities=51% Similarity=0.891 Sum_probs=101.8
Q ss_pred CcCCCCCCCcccceEEEEeCCCCCCCCCCCCCCCccceEEEEEeCCCCHHHHHHHHHHcCCcEEEEEeCCCCCCcceeee
Q psy12056 35 DFGSSFNGSFSGEKIRMVPANPPWSCTHPTNANTIKGHIALIERGECSFVHKAMIAESIGARGVIISDNDPDSDDFYVEM 114 (200)
Q Consensus 35 dFG~~~~~~~~~~~~~Lv~~~~~~aC~~~~~~~~v~gkIvLv~RG~Csf~~Kv~~Aq~aGA~avIi~n~~~~~~~~~~~m 114 (200)
|||..++.+.. .++|+.++|.++|++..+..+++|||+|++||+|+|.+|+++||++||+||||+|+..+....++.|
T Consensus 1 ~~~~~~~~~~~--~~~lv~~~p~~gC~~~~~~~~~~g~I~Lv~RG~C~F~~K~~~Aq~aGA~avII~n~~~~~~~~~~~m 78 (118)
T cd02127 1 DFGTIFNTRYK--HVPLVPADPLEACEELRNIHDINGNIALIERGGCSFLTKAINAQKAGALAVIITDVNNDSDEYYVEM 78 (118)
T ss_pred CCCcccccccc--ceEEEECCccccCCCCCCccccCCeEEEEECCCCCHHHHHHHHHHCCCcEEEEEECCCCccccceEe
Confidence 59999988775 7899999999999988777789999999999999999999999999999999999875433335678
Q ss_pred ccCCCCCccceeEEEeCHHHHHHHHHHHhcCCCeEEEEE
Q psy12056 115 ISDQSKREIHIPVAFLVGKNGRVIKNALKRLNMDYALIN 153 (200)
Q Consensus 115 ~~~~~~~~~~IP~v~Is~~dG~~L~~~l~~~~~~~a~I~ 153 (200)
.+++....++||+++|++++|+.|++.++++..++|.+.
T Consensus 79 ~~~~~~~~i~IP~v~Is~~dG~~L~~~l~~g~~~~~~~~ 117 (118)
T cd02127 79 IQDDSSRRADIPAAFLLGKNGYMIRKTLERLGLPYAIIN 117 (118)
T ss_pred cCCCCCCCceEEEEEecHHHHHHHHHHHHcCCceEEeee
Confidence 776545678999999999999999999999999988653
No 3
>cd02126 PA_EDEM3_like PA_EDEM3_like: protease associated domain (PA) domain-containing EDEM3-like proteins. This group contains various PA domain-containing proteins similar to mouse EDEM3 (ER-degradation-enhancing mannosidase-like 3 protein). EDEM3 contains a region, similar to Class I alpha-mannosidases (gylcosyl hydrolase family 47), N-terminal to the PA domain. EDEM3 accelerates glycoprotein ERAD (ER-associated degradation). In transfected mammalian cells, overexpression of EDEM3 enhances the mannose trimming from the N-glycans, of a model misfolded protein [alpha1-antitrypsin null (Hong Kong)] as well as, from total glycoproteins. Mannose trimming appears to be involved in the selection of ERAD substrates. EDEM3 has a different specificity of trimming than ER alpha-mannosidase 1. The significance of the PA domain to EDEM3 has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or pr
Probab=99.93 E-value=8.1e-25 Score=166.66 Aligned_cols=120 Identities=37% Similarity=0.561 Sum_probs=100.2
Q ss_pred ccccCCcCCCCCCCcccceEEEEeCCCCCCCCCCCCCCCccceEEEEEeCCCCHHHHHHHHHHcCCcEEEEEeCCCCCC-
Q psy12056 30 IRPAKDFGSSFNGSFSGEKIRMVPANPPWSCTHPTNANTIKGHIALIERGECSFVHKAMIAESIGARGVIISDNDPDSD- 108 (200)
Q Consensus 30 ~~~a~dFG~~~~~~~~~~~~~Lv~~~~~~aC~~~~~~~~v~gkIvLv~RG~Csf~~Kv~~Aq~aGA~avIi~n~~~~~~- 108 (200)
.++|+ ||.+++.... ..++|+.++|.++|++..++.+++|||+|++||+|+|.+|+++||++||+|+||+|+.++..
T Consensus 2 ~~pa~-FG~~~~~~~~-~~g~l~~~~p~~gC~~~~~~~~~~gkIaLv~RG~C~f~~K~~~Aq~aGA~avII~n~~~~~~~ 79 (126)
T cd02126 2 AGPAQ-FGMDLTGDKA-GVGRVVKAKPYRACSEITNAEEVKGKIAIMERGDCMFVEKARRVQKAGAIGGIVIDNNEGSSS 79 (126)
T ss_pred CCCcc-cCCcCCCCCC-ceEEEEeCCchhcccCCCCccccCceEEEEECCCCcHHHHHHHHHHCCCcEEEEEECCCCccc
Confidence 46888 9999986543 46799999999999998877789999999999999999999999999999999998776431
Q ss_pred --cceeeeccCCC-CCccceeEEEeCHHHHHHHHHHHhcCCCeEEE
Q psy12056 109 --DFYVEMISDQS-KREIHIPVAFLVGKNGRVIKNALKRLNMDYAL 151 (200)
Q Consensus 109 --~~~~~m~~~~~-~~~~~IP~v~Is~~dG~~L~~~l~~~~~~~a~ 151 (200)
..++.|.+++. ...+.||+++|++.+|++|+++++++..+++.
T Consensus 80 ~~~~~~~m~~~~~~~~~~~IP~v~I~~~dG~~L~~~l~~~~~~~~~ 125 (126)
T cd02126 80 DTAPMFAMSGDGDSTDDVTIPVVFLFSKEGSKLLAAIKEHQNVEVL 125 (126)
T ss_pred cccceeEeecCCCCCCCCeEEEEEEEHHHHHHHHHHHHhCCceEEe
Confidence 22456776542 23689999999999999999999998887643
No 4
>cd02132 PA_GO-like PA_GO-like: Protease-associated domain containing proteins like Arabidopsis thaliana growth-on protein GRO10. This group contains various PA domain-containing proteins similar to the functionally uncharacterized Arabidopsis GRO10. The PA domain may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=99.90 E-value=2.7e-22 Score=155.23 Aligned_cols=119 Identities=31% Similarity=0.487 Sum_probs=98.5
Q ss_pred cceeeeccccCCcCCCCCCCcc-cceEEEEeCCCCCCCCCCCCCCCccceEEEEEeCCCCHHHHHHHHHHcCCcEEEEEe
Q psy12056 24 LRYTFKIRPAKDFGSSFNGSFS-GEKIRMVPANPPWSCTHPTNANTIKGHIALIERGECSFVHKAMIAESIGARGVIISD 102 (200)
Q Consensus 24 l~~~~~~~~a~dFG~~~~~~~~-~~~~~Lv~~~~~~aC~~~~~~~~v~gkIvLv~RG~Csf~~Kv~~Aq~aGA~avIi~n 102 (200)
....|.+.+|. ||..+++... +..++++.+++.++|++..+ +++||||||+||+|+|.+|++|||++||+++||||
T Consensus 15 ~~~~~~~~~a~-FG~~~p~~~~~~~~~~lv~~~~~~gC~~~~~--~~~g~IvLV~RG~C~F~~K~~nA~~aGA~avIv~n 91 (139)
T cd02132 15 EGDELVGVTAR-FGASLPSKEDNANKTRAVLANPLDCCSPSTS--KLSGSIALVERGECAFTEKAKIAEAGGASALLIIN 91 (139)
T ss_pred cccEEEeeccc-cCCCCCCcccCccEEEEEECCcccccCCCCc--ccCCeEEEEECCCCCHHHHHHHHHHcCCcEEEEEE
Confidence 45689999999 9998765322 25789999999999998764 78999999999999999999999999999999999
Q ss_pred CCCCCCcceeeeccC--CCCCccceeEEEeCHHHHHHHHHHHhcCCCeE
Q psy12056 103 NDPDSDDFYVEMISD--QSKREIHIPVAFLVGKNGRVIKNALKRLNMDY 149 (200)
Q Consensus 103 ~~~~~~~~~~~m~~~--~~~~~~~IP~v~Is~~dG~~L~~~l~~~~~~~ 149 (200)
+.+. ++.|... +......||+++|++++|+.|+++++++.+++
T Consensus 92 ~~~~----~~~~~~~~~~~~~~~~IP~v~Is~~~G~~L~~~l~~g~~Vt 136 (139)
T cd02132 92 DQEE----LYKMVCEDNDTSLNISIPVVMIPQSAGDALNKSLDQGKKVE 136 (139)
T ss_pred CCCc----ccccccCCCCCCCCCcEeEEEecHHHHHHHHHHHHcCCcEE
Confidence 7743 2345432 22346799999999999999999999988765
No 5
>cd04813 PA_1 PA_1: Protease-associated (PA) domain subgroup 1. A subgroup of PA-domain containing proteins. Proteins in this subgroup contain a RING-finger (Really Interesting New Gene) domain C-terminal to this PA domain. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins in this group contain a C-terminal RING-finger domain. Proteins into which the PA domain is inserted include the following: i) various signal peptide peptidases: such as hSPPL2a and 2b, ii) various E3 ubiquitin ligases similar to human GRAIL (gene related to anergy in lymphocytes) protein, iii) various proteins containing a RING finger motif such as Arabid
Probab=99.88 E-value=4e-22 Score=149.94 Aligned_cols=107 Identities=28% Similarity=0.506 Sum_probs=88.0
Q ss_pred ccccCCcCCCCCCCcccceEEEEeCCCCCCCCCCCCCCCccceEEEEEeCCCCHHHHHHHHHHcCCcEEEEEeCCCCCCc
Q psy12056 30 IRPAKDFGSSFNGSFSGEKIRMVPANPPWSCTHPTNANTIKGHIALIERGECSFVHKAMIAESIGARGVIISDNDPDSDD 109 (200)
Q Consensus 30 ~~~a~dFG~~~~~~~~~~~~~Lv~~~~~~aC~~~~~~~~v~gkIvLv~RG~Csf~~Kv~~Aq~aGA~avIi~n~~~~~~~ 109 (200)
.+.|+ ||++|+....+ ..+ ++|.++|++. +..+++||||||+||+|+|.+|+++||++||++|||+|+..+.
T Consensus 5 ~~~~~-~~~~~~~~~~~--~~~--~~p~~gC~~~-~~~~l~gkIvLV~RG~CsF~~K~~nAq~aGA~avII~n~~~~~-- 76 (117)
T cd04813 5 GRYAS-FSPILNPHLRG--SYK--VSPTDACSLQ-EHAEIDGKVALVLRGGCGFLDKVMWAQRRGAKAVIVGDDEPGR-- 76 (117)
T ss_pred ccccc-cCCccCccccc--ccc--CCCCCCCCCC-CcCCcCCeEEEEECCCCCHHHHHHHHHHCCCcEEEEEECCCcc--
Confidence 35677 99999887752 222 7788999987 4468999999999999999999999999999999999987642
Q ss_pred ceeeeccCCCCCccceeEEEeCHHHHHHHHHHHhc
Q psy12056 110 FYVEMISDQSKREIHIPVAFLVGKNGRVIKNALKR 144 (200)
Q Consensus 110 ~~~~m~~~~~~~~~~IP~v~Is~~dG~~L~~~l~~ 144 (200)
.++.|.+++....+.||+++|++++|+.|+.++.+
T Consensus 77 ~~~~m~~~~~~~~v~IPav~Is~~~g~~L~~l~~~ 111 (117)
T cd04813 77 GLITMFSNGDTDNVTIPAMFTSRTSYHLLSSLLPK 111 (117)
T ss_pred cceecccCCCCCCcEEEEEEEcHHHHHHHHHhccc
Confidence 24467655545678999999999999999988765
No 6
>cd02125 PA_VSR PA_VSR: Protease-associated (PA) domain-containing plant vacuolar sorting receptor (VSR). This group includes various PA domain-containing VSRs such as garden pea BP-80, pumpkin PV72, and various Arabidopsis VSRs including AtVSR1. In contrast to most eukaryotes, which only have one or two VSRs, plants have several. This may in part be a reflection of having a more complex vacuolar system with both lytic vacuoles and storage vacuoles. The lytic vacuole is thought to be equivalent to the mammalian lysosome and the yeast vacuole. Pea BP-80 is a type 1 transmembrane protein, involved in the targeting of proteins to the lytic vacuole; it has been suggested that this protein also mediates targeting to the storage vacuole. PV72 and AtVSR1 may mediate transport of seed storage proteins to protein storage vacuoles. The significance of the PA domain to VSRs has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may partic
Probab=99.88 E-value=7.4e-22 Score=150.53 Aligned_cols=110 Identities=25% Similarity=0.385 Sum_probs=87.9
Q ss_pred CcCC-CCCCCcccceEEEEeC-CCCCCCCCCCC---CC----CccceEEEEEeCCCCHHHHHHHHHHcCCcEEEEEeCCC
Q psy12056 35 DFGS-SFNGSFSGEKIRMVPA-NPPWSCTHPTN---AN----TIKGHIALIERGECSFVHKAMIAESIGARGVIISDNDP 105 (200)
Q Consensus 35 dFG~-~~~~~~~~~~~~Lv~~-~~~~aC~~~~~---~~----~v~gkIvLv~RG~Csf~~Kv~~Aq~aGA~avIi~n~~~ 105 (200)
+||. +|+.+.. +.|++. ++.++|+++.+ +. ...+||||++||+|+|.+|+++||++||+++||+|+.+
T Consensus 1 ~FG~~~yg~~~~---G~l~~~~~~~~gC~~~~~~~~~~~~~~~~~~~IvLv~RG~C~F~~K~~~Aq~aGA~avII~n~~~ 77 (127)
T cd02125 1 NFGLPQYGGTLT---GVVVYPKENRTGCKEFDVFFKPKKSEPGRRPVILLLDRGGCFFTLKAWNAQQAGAAAVLVADNVD 77 (127)
T ss_pred CCCCCCcCCeeE---EEEEecCCccccCCCCcccccccccccCCCceEEEEECCCcCHHHHHHHHHHCCCcEEEEEECCC
Confidence 3999 5888774 466665 67899998753 21 37789999999999999999999999999999999875
Q ss_pred CCCcceeeeccC------CCCCccceeEEEeCHHHHHHHHHHHhcCCCeEE
Q psy12056 106 DSDDFYVEMISD------QSKREIHIPVAFLVGKNGRVIKNALKRLNMDYA 150 (200)
Q Consensus 106 ~~~~~~~~m~~~------~~~~~~~IP~v~Is~~dG~~L~~~l~~~~~~~a 150 (200)
+. ++.|... +....+.||+++|++++|+.|++.++++..++.
T Consensus 78 ~~---~~~m~~~~~~~~~~~~~~i~IP~v~Is~~~G~~L~~~l~~g~~V~v 125 (127)
T cd02125 78 EP---LLTMDTPEESGSADYIEKITIPSALITKAFGEKLKKAISNGEMVVI 125 (127)
T ss_pred Cc---cccccCcccccccccCCCceEeEEEECHHHHHHHHHHHhcCCeEEE
Confidence 32 3456431 123467899999999999999999999988764
No 7
>cd02123 PA_C_RZF_like PA_C-RZF_ like: Protease-associated (PA) domain C_RZF-like. This group includes various PA domain-containing proteins similar to C-RZF (chicken embryo RING zinc finger) protein. These proteins contain a C3H2C3 RING finger. C-RZF is expressed in embryo cells and is restricted mainly to brain and heart, it is localized to both the nucleus and endosomes. Additional C3H2C3 RING finger proteins belonging to this group, include Arabidopsis ReMembR-H2 protein and mouse sperizin. ReMembR-H2 is likely to be an integral membrane protein, and to traffic through the endosomal pathway. Sperizin is expressed in haploid germ cells and localized in the cytoplasm, it may participate in spermatogenesis. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and acce
Probab=99.88 E-value=1.3e-21 Score=153.74 Aligned_cols=116 Identities=28% Similarity=0.426 Sum_probs=96.3
Q ss_pred eeeeccccCCcCCCCCCCcccceEEEEeCCCCCCCCCCCC----CCCccceEEEEEeCCCCHHHHHHHHHHcCCcEEEEE
Q psy12056 26 YTFKIRPAKDFGSSFNGSFSGEKIRMVPANPPWSCTHPTN----ANTIKGHIALIERGECSFVHKAMIAESIGARGVIIS 101 (200)
Q Consensus 26 ~~~~~~~a~dFG~~~~~~~~~~~~~Lv~~~~~~aC~~~~~----~~~v~gkIvLv~RG~Csf~~Kv~~Aq~aGA~avIi~ 101 (200)
..|...+|. ||.+..... +.+.|+.+++.+||++..+ ..++.|||||++||+|+|.+|+++||++||+|+||+
T Consensus 22 ~~~~~~~A~-FG~~~~~~~--~~g~lv~~~p~~gC~~~~~~~~~~~~~~g~IvLV~RG~CtF~~Kv~nAq~aGA~avII~ 98 (153)
T cd02123 22 DEFDDLPAN-FGPIPPGSG--LKGVLVVAEPLNACSPIENPPLNSNASGSFIVLIRRGNCSFETKVRNAQRAGYKAAIVY 98 (153)
T ss_pred ceEeeeccc-CCCCCCCCc--eEEEEEeCCccccCCCCcccccccccCCCeEEEEECCCCCHHHHHHHHHHCCCCEEEEE
Confidence 568888998 998654322 3678999999999998764 257899999999999999999999999999999999
Q ss_pred eCCCCCCcceeeeccCCCC-CccceeEEEeCHHHHHHHHHHHhcCCC
Q psy12056 102 DNDPDSDDFYVEMISDQSK-REIHIPVAFLVGKNGRVIKNALKRLNM 147 (200)
Q Consensus 102 n~~~~~~~~~~~m~~~~~~-~~~~IP~v~Is~~dG~~L~~~l~~~~~ 147 (200)
|+..+. .+.|..++.. ..+.||+++|++++|+.|++++++++.
T Consensus 99 n~~~~~---~~~m~~~~~~~~~v~IP~v~Is~~dg~~L~~~l~~~~~ 142 (153)
T cd02123 99 NDESND---LISMSGNDQEIKGIDIPSVFVGKSTGEILKKYASYEKG 142 (153)
T ss_pred ECCCCc---ceeccCCCCCCcCCEEEEEEeeHHHHHHHHHHHhcCCc
Confidence 987532 3466665432 478999999999999999999998776
No 8
>cd02122 PA_GRAIL_like PA _GRAIL_like: Protease-associated (PA) domain GRAIL-like. This group includes PA domain containing E3 (ubiquitin ligases) similar to human GRAIL (gene related to anergy in lymphocytes) protein. Proteins in this group contain a C3H2C3 RING finger. E3 ubiquitin ligase is part of an enzymic cascade, the end result of which is the ubiquitination of proteins. In this cascade, E1 activates the ubiquitin, the activated ubiquitin is carried by E2, and E3 recognizes the acceptor protein as well as catalyzes the transfer of the activated ubiquitin from E2 to this acceptor. GRAIL, a transmembrane protein localized in the endosomes, controls the development of T cell clonal anergy, and may ubiquitinate membrane-associated targets for T cell activation. GRAIL1 is associated with, and regulated by, two isoforms of otubain 1 (the ubiquitin-specific protease). Additional E3s belonging to this group include human (h)Goliath and Xenopus GREUL1 (Goliath Related E3 Ubiquitin Ligase
Probab=99.87 E-value=4.3e-21 Score=148.24 Aligned_cols=113 Identities=24% Similarity=0.277 Sum_probs=89.9
Q ss_pred ccCCcCCCCCCCcccceEEEEe---CCCCCCCCCCCC---CCCccceEEEEEeCCCCHHHHHHHHHHcCCcEEEEEeCCC
Q psy12056 32 PAKDFGSSFNGSFSGEKIRMVP---ANPPWSCTHPTN---ANTIKGHIALIERGECSFVHKAMIAESIGARGVIISDNDP 105 (200)
Q Consensus 32 ~a~dFG~~~~~~~~~~~~~Lv~---~~~~~aC~~~~~---~~~v~gkIvLv~RG~Csf~~Kv~~Aq~aGA~avIi~n~~~ 105 (200)
+|+ ||.+.+.... .+.|+. +.+.+||++..+ ..+++|+||||+||+|+|.+|+++||++||++|||||+.+
T Consensus 19 ~a~-fg~~~~~~~~--~G~l~~~~~~~~~~gC~~~~~~~~~~~~~g~IaLV~RG~C~F~~K~~nA~~aGA~aVIIyn~~~ 95 (138)
T cd02122 19 SGR-YGEHSPKEEA--KGLVVVPDPPNDHYGCDPDTRFPIPPNGEPWIALIQRGNCTFEEKIKLAAERNASAVVIYNNPG 95 (138)
T ss_pred ccc-cCCCCCCCcc--EEEEecCCCCCCcCCCCCCccccCCccCCCeEEEEECCCCCHHHHHHHHHHCCCcEEEEEECCC
Confidence 577 9986654432 556654 445799998765 3578999999999999999999999999999999999886
Q ss_pred CCCcceeeeccCCCCCccceeEEEeCHHHHHHHHHHHhcCCCeEEE
Q psy12056 106 DSDDFYVEMISDQSKREIHIPVAFLVGKNGRVIKNALKRLNMDYAL 151 (200)
Q Consensus 106 ~~~~~~~~m~~~~~~~~~~IP~v~Is~~dG~~L~~~l~~~~~~~a~ 151 (200)
. ....+.|..++ ...||+++|++.+|+.|+++++++.+++..
T Consensus 96 ~-~~~~~~m~~~~---~~~ip~v~Is~~~G~~l~~~l~~G~~Vtv~ 137 (138)
T cd02122 96 T-GNETVKMSHPG---TGDIVAIMITNPKGMEILELLERGISVTMV 137 (138)
T ss_pred C-CCceeeccCCC---CCcceEEEEcHHHHHHHHHHHHcCCcEEEe
Confidence 2 12245676543 247899999999999999999999887643
No 9
>cd02129 PA_hSPPL_like PA_hSPPL_like: Protease-associated domain containing human signal peptide peptidase-like (hSPPL)-like. This group contains various PA domain-containing proteins similar to hSPPL2a and 2b. These SPPLs are GxGD aspartic proteases. SPPL2a is sorted to the late endosomes, SPPL2b to the plasma membrane. In activated dendritic cells, hSPPL2a and 2b catalyze the intramembrane proteolysis of tumor necrosis factor alpha triggering IL-12 production. hSPPL2a and 2b may have a broad substrate spectrum. The significance of the PA domain to these SPPLs has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=99.87 E-value=1.8e-21 Score=146.65 Aligned_cols=95 Identities=24% Similarity=0.376 Sum_probs=78.4
Q ss_pred ceEEEEeCCCCCCCCCCCC-CCCccceEEEEEeCCCCHHHHHHHHHHcCCcEEEEEeCCCCCCcceeeecc-CCCCCccc
Q psy12056 47 EKIRMVPANPPWSCTHPTN-ANTIKGHIALIERGECSFVHKAMIAESIGARGVIISDNDPDSDDFYVEMIS-DQSKREIH 124 (200)
Q Consensus 47 ~~~~Lv~~~~~~aC~~~~~-~~~v~gkIvLv~RG~Csf~~Kv~~Aq~aGA~avIi~n~~~~~~~~~~~m~~-~~~~~~~~ 124 (200)
...+|+..+|..+|++.+. ..+++|||+|++||+|+|.+|+++||++||+||||+|+.... ...+ .+....++
T Consensus 20 ~~~~~~~~~~~~gC~~~~~~~~~l~gkIaLV~RG~CsF~~K~~~Aq~aGA~aVII~nn~~~~-----~~~~~~~~~~~v~ 94 (120)
T cd02129 20 TLLPLRNLTSSVLCSASDVPPGGLKGKAVVVMRGNCTFYEKARLAQSLGAEGLLIVSRERLV-----PPSGNRSEYEKID 94 (120)
T ss_pred cceeeecCCCcCCCCccccCccccCCeEEEEECCCcCHHHHHHHHHHCCCCEEEEEECCCCC-----CCCCCCCCCcCCc
Confidence 3678999999999998764 457999999999999999999999999999999999987521 1111 11125678
Q ss_pred eeEEEeCHHHHHHHHHHHhcCC
Q psy12056 125 IPVAFLVGKNGRVIKNALKRLN 146 (200)
Q Consensus 125 IP~v~Is~~dG~~L~~~l~~~~ 146 (200)
||+++|++++|+.|++.+.++-
T Consensus 95 IP~v~Is~~dG~~i~~~l~~~~ 116 (120)
T cd02129 95 IPVALLSYKDMLDIQQTFGDSV 116 (120)
T ss_pred ccEEEEeHHHHHHHHHHhccCc
Confidence 9999999999999999998643
No 10
>cd04818 PA_subtilisin_1 PA_subtilisin_1: Protease-associated domain containing subtilisin-like proteases, subgroup 1. A subgroup of PA domain-containing subtilisin-like proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following subtilisin-like proteases: i) melon cucumisin, ii) Arabidopsis thaliana Ara12, iii) Alnus glutinosa ag12, iv) members of the tomato P69 family, and v) tomato LeSBT2. However, these proteins belong to other subtilisin-like subgroups. Relatively little is known about proteins in this subgroup.
Probab=99.85 E-value=2.2e-20 Score=140.27 Aligned_cols=114 Identities=31% Similarity=0.433 Sum_probs=93.1
Q ss_pred ccCCcCCCCCCC-cccceEEEEeCCCCCCCCCCCCCCCccceEEEEEeCCCCHHHHHHHHHHcCCcEEEEEeCCCCCCcc
Q psy12056 32 PAKDFGSSFNGS-FSGEKIRMVPANPPWSCTHPTNANTIKGHIALIERGECSFVHKAMIAESIGARGVIISDNDPDSDDF 110 (200)
Q Consensus 32 ~a~dFG~~~~~~-~~~~~~~Lv~~~~~~aC~~~~~~~~v~gkIvLv~RG~Csf~~Kv~~Aq~aGA~avIi~n~~~~~~~~ 110 (200)
+|+ ||..+... ...+.++|+.+++.++|++.....+++||||||+||+|+|.+|+.+|+++||+|+||+|+..+. .
T Consensus 2 ~a~-fg~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~v~GkIvL~~rg~c~f~~k~~~a~~aGA~gvIi~~~~~~~--~ 78 (118)
T cd04818 2 SAG-FGPALTNVTADVVLAGAAPASNTDGCTAFTNAAAFAGKIALIDRGTCNFTVKVLNAQNAGAIAVIVANNVAGG--A 78 (118)
T ss_pred Ccc-cCCcCccccccceeEEEecCCcccccCCCCcCCCCCCEEEEEECCCCCHHHHHHHHHHCCCeEEEEEECCCCC--c
Confidence 577 99977642 1125789999999999999876567999999999999999999999999999999999987642 1
Q ss_pred eeeeccCCCCCccceeEEEeCHHHHHHHHHHHhcCCCeEE
Q psy12056 111 YVEMISDQSKREIHIPVAFLVGKNGRVIKNALKRLNMDYA 150 (200)
Q Consensus 111 ~~~m~~~~~~~~~~IP~v~Is~~dG~~L~~~l~~~~~~~a 150 (200)
.+.|.++. ....||+++|++++|+.|+++++++.+++.
T Consensus 79 ~~~~~~~~--~~~~iP~v~V~~~~g~~l~~~l~~g~~v~v 116 (118)
T cd04818 79 PITMGGDD--PDITIPAVMISQADGDALKAALAAGGTVTV 116 (118)
T ss_pred ceeccCCC--CCCEEeEEEecHHHHHHHHHHHhcCCcEEE
Confidence 23454432 346799999999999999999998887654
No 11
>cd04816 PA_SaNapH_like PA_SaNapH_like: Protease-associated domain containing proteins like Streptomyces anulatus N-acetylpuromycin N-acetylhydrolase (SaNapH).This group contains various PA domain-containing proteins similar SaNapH. Proteins in this group belong to the peptidase M28 family. NapH is a terminal enzyme in the puromycin biosynthetic pathway; NapH hydrolyzes N-acetylpuromycin to the active antibiotic. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=99.80 E-value=1.7e-18 Score=130.83 Aligned_cols=101 Identities=24% Similarity=0.443 Sum_probs=80.2
Q ss_pred ceEEEEeCCC--CCCCCCCC-CCCCccceEEEEEeCCCCHHHHHHHHHHcCCcEEEEEeCCCCCCcceeeeccCCCCCcc
Q psy12056 47 EKIRMVPANP--PWSCTHPT-NANTIKGHIALIERGECSFVHKAMIAESIGARGVIISDNDPDSDDFYVEMISDQSKREI 123 (200)
Q Consensus 47 ~~~~Lv~~~~--~~aC~~~~-~~~~v~gkIvLv~RG~Csf~~Kv~~Aq~aGA~avIi~n~~~~~~~~~~~m~~~~~~~~~ 123 (200)
++++|++.++ .++|++.. +..+++||||||+||+|+|.+|+++|+++||+|+||+|+..+.... ..+... ....
T Consensus 17 i~~~lv~~~~~~~~gC~~~~~~~~~~~GkIvLv~rg~c~f~~K~~~A~~aGA~avIi~n~~~~~~~~-~~~~~~--~~~~ 93 (122)
T cd04816 17 VTAPLVPLDPERPAGCDASDYDGLDVKGAIVLVDRGGCPFADKQKVAAARGAVAVIVVNNSDGGGTA-GTLGAP--NIDL 93 (122)
T ss_pred cEEEEEEcCCCCccCCCccccCCCCcCCeEEEEECCCCCHHHHHHHHHHCCCcEEEEEeCCCCcccc-ccccCC--CCCC
Confidence 5789998764 58999865 3457999999999999999999999999999999999987532110 011111 1456
Q ss_pred ceeEEEeCHHHHHHHHHHHhcCCCeEE
Q psy12056 124 HIPVAFLVGKNGRVIKNALKRLNMDYA 150 (200)
Q Consensus 124 ~IP~v~Is~~dG~~L~~~l~~~~~~~a 150 (200)
.||+++|++++|++|+++++++.++++
T Consensus 94 ~iP~~~Is~~~G~~l~~~l~~g~~v~~ 120 (122)
T cd04816 94 KVPVGVITKAAGAALRRRLGAGETLEL 120 (122)
T ss_pred eeeEEEEcHHHHHHHHHHHcCCCEEEE
Confidence 799999999999999999999887654
No 12
>cd02130 PA_ScAPY_like PA_ScAPY_like: Protease-associated domain containing proteins like Saccharomyces cerevisiae aminopeptidase Y (ScAPY). This group contains various PA domain-containing proteins similar to the S. cerevisiae APY, including Trichophyton rubrum leucine aminopeptidase 1(LAP1). Proteins in this group belong to the peptidase M28 family. ScAPY hydrolyzes amino acid-4-methylcoumaryl-7-amides (MCAs). ScAPY more rapidly hydrolyzes dipeptidyl-MCAs. Hydrolysis of amino acid-MCAs or dipeptides is stimulated by Co2+ while the hydrolysis of dipeptidyl-MCAs, tripeptides, and longer peptides is inhibited by Co2+. ScAPY is vacuolar and is activated by proteolytic processing. LAP1 is a secreted leucine aminopeptidase. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stab
Probab=99.77 E-value=5.7e-18 Score=127.94 Aligned_cols=99 Identities=27% Similarity=0.409 Sum_probs=79.5
Q ss_pred ceEEEEeCCCCCCCCCCCCCCCccceEEEEEeCCCCHHHHHHHHHHcCCcEEEEEeCCCCCCcceeeeccCCCCCcccee
Q psy12056 47 EKIRMVPANPPWSCTHPTNANTIKGHIALIERGECSFVHKAMIAESIGARGVIISDNDPDSDDFYVEMISDQSKREIHIP 126 (200)
Q Consensus 47 ~~~~Lv~~~~~~aC~~~~~~~~v~gkIvLv~RG~Csf~~Kv~~Aq~aGA~avIi~n~~~~~~~~~~~m~~~~~~~~~~IP 126 (200)
..++|++. +.++|++.+.+.+++|||||++||+|+|.+|+++|+++||+++||+|+..... ...... ......||
T Consensus 22 ~~g~lv~~-~~~gC~~~~~~~~~~gkIvlv~rg~c~f~~K~~~A~~aGA~~vIv~n~~~~~~--~~~~~~--~~~~~~Ip 96 (122)
T cd02130 22 VTGPLVVV-PNLGCDAADYPASVAGNIALIERGECPFGDKSALAGAAGAAAAIIYNNVPAGG--LSGTLG--EPSGPYVP 96 (122)
T ss_pred cEEEEEEe-CCCCCCcccCCcCCCCEEEEEECCCCCHHHHHHHHHHCCCcEEEEEECCCCcc--cccccC--CCCCCEee
Confidence 36788886 47899987665679999999999999999999999999999999999873111 111111 12356799
Q ss_pred EEEeCHHHHHHHHHHHhcCCCeEE
Q psy12056 127 VAFLVGKNGRVIKNALKRLNMDYA 150 (200)
Q Consensus 127 ~v~Is~~dG~~L~~~l~~~~~~~a 150 (200)
+++|++++|+.|++.++++++++.
T Consensus 97 ~v~Is~~~G~~L~~~l~~g~~v~~ 120 (122)
T cd02130 97 TVGISQEDGKALVAALANGGEVSA 120 (122)
T ss_pred EEEecHHHHHHHHHHHhcCCcEEE
Confidence 999999999999999999988764
No 13
>cd02124 PA_PoS1_like PA_PoS1_like: Protease-associated (PA) domain PoS1-like. This group includes various PA domain-containing proteins similar to Pleurotus ostreatus (Po)S1. PoSl, the main extracellular protease in P. ostreatus is a subtilisin-like serine protease belonging to the peptidase S8 family. Ca2+ and Mn2+ both stimulate the protease activity of (Po)S1. Ca2+ protects PoS1 from autolysis. PoS1 is a monomeric glycoprotein, which may play a role in the regulation of laccases in lignin formation. (Po)S1 participates in the degradation of POXA1b, and in the activation of POXA3, (POXA1b and POXA3 are laccase isoenzymes), but its effect may be indirect. The significance of the PA domain to PoS1 has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=99.71 E-value=1.3e-16 Score=121.94 Aligned_cols=89 Identities=24% Similarity=0.321 Sum_probs=70.2
Q ss_pred CCCCCCCCCCC-CCCCccceEEEEEeCCCCHHHHHHHHHHcCCcEEEEEeCCCCCCcceeeeccCCCCCccceeEEEeCH
Q psy12056 54 ANPPWSCTHPT-NANTIKGHIALIERGECSFVHKAMIAESIGARGVIISDNDPDSDDFYVEMISDQSKREIHIPVAFLVG 132 (200)
Q Consensus 54 ~~~~~aC~~~~-~~~~v~gkIvLv~RG~Csf~~Kv~~Aq~aGA~avIi~n~~~~~~~~~~~m~~~~~~~~~~IP~v~Is~ 132 (200)
+.+.+||+++. +..+++||||||+||+|+|.+|++||+++||++|||||+.++. + .+... ....+|.+++ +
T Consensus 38 ~~~~~gC~~~~~~~~~~~g~IaLv~rg~c~f~~K~~nA~~aGA~aviiyn~~~~~---~-~~~~~---~~~~~~~~~~-~ 109 (129)
T cd02124 38 SVADDACQPLPDDTPDLSGYIVLVRRGTCTFATKAANAAAKGAKYVLIYNNGSGP---T-DQVGS---DADSIIAAVT-P 109 (129)
T ss_pred CCCcccCcCCCcccccccCeEEEEECCCCCHHHHHHHHHHcCCcEEEEEECCCCc---c-cccCC---CCcceeeEEe-H
Confidence 35779999874 3357899999999999999999999999999999999987542 1 22221 2334666666 9
Q ss_pred HHHHHHHHHHhcCCCeEE
Q psy12056 133 KNGRVIKNALKRLNMDYA 150 (200)
Q Consensus 133 ~dG~~L~~~l~~~~~~~a 150 (200)
++|++|++.++++..+++
T Consensus 110 ~~G~~l~~~l~~G~~vtv 127 (129)
T cd02124 110 EDGEAWIDALAAGSNVTV 127 (129)
T ss_pred HHHHHHHHHHhcCCeEEE
Confidence 999999999999877664
No 14
>cd04817 PA_VapT_like PA_VapT_like: Protease-associated domain containing proteins like VapT from Vibrio metschnikovii strain RH530. This group contains various PA domain-containing proteins similar to V. metschnikovii VapT, including the serine alkaline protease SapSh from the psychotroph Shewanella strain Ac10 and the Apa1 protease from the psychrotroph Pseudoalteromonas Sp. As-11. VapT is a sodium dodecyl sulfate (SDS) resistant extracellular alkaline serine protease showing high activity over a broad pH range and temperature. SapSh has a high level of protease activity at low temperatures. Apa1 is also cold-adapted. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=99.69 E-value=4e-16 Score=120.52 Aligned_cols=96 Identities=20% Similarity=0.221 Sum_probs=72.0
Q ss_pred ceEEEEeCCCCCCCCCCCCCCCccceEEEEEeCCCC-----HHHHHHHHHHcCCcEEEEEeCCCCCCcceeeeccCCCCC
Q psy12056 47 EKIRMVPANPPWSCTHPTNANTIKGHIALIERGECS-----FVHKAMIAESIGARGVIISDNDPDSDDFYVEMISDQSKR 121 (200)
Q Consensus 47 ~~~~Lv~~~~~~aC~~~~~~~~v~gkIvLv~RG~Cs-----f~~Kv~~Aq~aGA~avIi~n~~~~~~~~~~~m~~~~~~~ 121 (200)
..++|+.... .+|+.. ..+++|||+|++||+|+ |.+|+++|+++||+|+||||+...... +..+..+. ..
T Consensus 36 ~tg~lv~~g~-~g~d~~--~~d~~GkIaLI~RG~c~~~~~~f~~Kv~~A~~aGA~avIIyNn~~~~g~-~~~~lg~~-~~ 110 (139)
T cd04817 36 ATGSLYYCGT-SGGSYI--CGGMAGKICLIERGGNSKSVYPEIDKVKACQNAGAIAAIVYSNAALAGL-QNPFLVDT-NN 110 (139)
T ss_pred ceEEEEEccC-CCcccc--CCCcCccEEEEECCCCCCCcccHHHHHHHHHHCCCeEEEEEeCCCCCCc-ccccccCC-CC
Confidence 4678888763 447322 34789999999999999 999999999999999999999732111 11122221 12
Q ss_pred ccceeEEEeCHHHHHHHHHHHhcCCC
Q psy12056 122 EIHIPVAFLVGKNGRVIKNALKRLNM 147 (200)
Q Consensus 122 ~~~IP~v~Is~~dG~~L~~~l~~~~~ 147 (200)
...||+++|++++|++|++.+.++..
T Consensus 111 ~~~IP~v~is~~dG~~L~~~l~~~~t 136 (139)
T cd04817 111 DTTIPSVSVDRADGQALLAALGQSTT 136 (139)
T ss_pred CceEeEEEeeHHHHHHHHHHhcCCCe
Confidence 57899999999999999999976543
No 15
>PF02225 PA: PA domain; InterPro: IPR003137 The PA (Protease associated) domain is found as an insert domain in diverse proteases, which include the MEROPS peptidase families A22B, M28, and S8A []. The PA domain is also found in a plant vacuolar sorting receptor O22925 from SWISSPROT and members of the RZF family, e.g. O43567 from SWISSPROT.; PDB: 3EIF_A 1XF1_B 3BXM_A 2C6P_A 1Z8L_C 3SJF_A 3BHX_A 2C6G_A 3D7F_A 2XEG_A ....
Probab=99.68 E-value=6.7e-17 Score=117.10 Aligned_cols=92 Identities=35% Similarity=0.586 Sum_probs=65.2
Q ss_pred ceEEEEeCCCC---CCCCC-CCCCCCccceEEEEEeCCCCHHHHHHHHHHcCCcEEEEEeCCCCCCcceeeeccCCCCCc
Q psy12056 47 EKIRMVPANPP---WSCTH-PTNANTIKGHIALIERGECSFVHKAMIAESIGARGVIISDNDPDSDDFYVEMISDQSKRE 122 (200)
Q Consensus 47 ~~~~Lv~~~~~---~aC~~-~~~~~~v~gkIvLv~RG~Csf~~Kv~~Aq~aGA~avIi~n~~~~~~~~~~~m~~~~~~~~ 122 (200)
..++||..... ..|.+ ..+..+++||||||+||.|+|.+|+++||++||+|+||+|....... +........
T Consensus 6 ~~~~lV~~~~~~~~~~~~~~~~~~~~~~gkIvlv~rg~~~~~~k~~~a~~~GA~gvIi~~~~~~~~~----~~~~~~~~~ 81 (101)
T PF02225_consen 6 VTGPLVPAGNGIDEGDCCPSDYNGSDVKGKIVLVERGSCSFDDKVRNAQKAGAKGVIIYNPPPNNGS----MIDSEDPDP 81 (101)
T ss_dssp EEEEEEEETTEEECCHHHHHHTSTSTCTTSEEEEESTSSCHHHHHHHHHHTTESEEEEE-TSCSCTT----TTCEBTTTS
T ss_pred EEEEEEEecCCCCcccccccccCCccccceEEEEecCCCCHHHHHHHHHHcCCEEEEEEeCCccccC----cccccCCCC
Confidence 36788843322 22332 33567899999999999999999999999999999999992221111 111112356
Q ss_pred cceeEEEeCHHHHHHHHHHH
Q psy12056 123 IHIPVAFLVGKNGRVIKNAL 142 (200)
Q Consensus 123 ~~IP~v~Is~~dG~~L~~~l 142 (200)
..||+++|++++|++|++|+
T Consensus 82 ~~iP~v~I~~~~g~~L~~~i 101 (101)
T PF02225_consen 82 IDIPVVFISYEDGEALLAYI 101 (101)
T ss_dssp TBSEEEEE-HHHHHHHHHHH
T ss_pred cEEEEEEeCHHHHhhhhccC
Confidence 78999999999999999986
No 16
>cd00538 PA PA: Protease-associated (PA) domain. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following: i) various signal peptide peptidases including, hSPPL2a and 2b which catalyze the intramembrane proteolysis of tumor necrosis factor alpha, ii) various proteins containing a C3H2C3 RING finger including, Arabidopsis ReMembR-H2 protein and various E3 ubiquitin ligases such as human GRAIL (gene related to anergy in lymphocytes), iii) EDEM3 (ER-degradation-enhancing mannosidase-like 3 protein), iv) various plant vacuolar sorting receptors such as Pisum sativum BP-80, v) g
Probab=99.65 E-value=1.3e-15 Score=114.27 Aligned_cols=93 Identities=29% Similarity=0.405 Sum_probs=72.7
Q ss_pred CCCCCCCCCC---CCCCccceEEEEEeCCCCHHHHHHHHHHcCCcEEEEEeCCCCCCcceeeeccCC-CCCccceeEEEe
Q psy12056 55 NPPWSCTHPT---NANTIKGHIALIERGECSFVHKAMIAESIGARGVIISDNDPDSDDFYVEMISDQ-SKREIHIPVAFL 130 (200)
Q Consensus 55 ~~~~aC~~~~---~~~~v~gkIvLv~RG~Csf~~Kv~~Aq~aGA~avIi~n~~~~~~~~~~~m~~~~-~~~~~~IP~v~I 130 (200)
.+..+|.+.. +..+++||||||+||+|+|.+|+++|+++||+|+||+|+...... .+...+ ......||+++|
T Consensus 28 ~~~~~C~~~~~~~~~~~~~GkIvl~~~g~~~~~~k~~~a~~~GA~gvii~~~~~~~~~---~~~~~~~~~~~~~iP~~~i 104 (126)
T cd00538 28 GPLVGCGYGTTDDSGADVKGKIVLVRRGGCSFSEKVKNAQKAGAKAVIIYNNGDDPGP---QMGSVGLESTDPSIPTVGI 104 (126)
T ss_pred cceEEEecCcccccCCCccceEEEEECCCcCHHHHHHHHHHCCCEEEEEEECCCCccc---ccccccCCCCCCcEeEEEe
Confidence 3567787764 356799999999999999999999999999999999998753211 111111 023567999999
Q ss_pred CHHHHHHHHHHHhcCCCeEE
Q psy12056 131 VGKNGRVIKNALKRLNMDYA 150 (200)
Q Consensus 131 s~~dG~~L~~~l~~~~~~~a 150 (200)
+.++|++|+++++++.+++.
T Consensus 105 s~~~g~~l~~~~~~~~~v~~ 124 (126)
T cd00538 105 SYADGEALLSLLEAGKTVTV 124 (126)
T ss_pred CHHHHHHHHHHHhcCCceEE
Confidence 99999999999999877654
No 17
>cd02133 PA_C5a_like PA_C5a_like: Protease-associated domain containing proteins like Streptococcus pyogenes C5a peptidase. This group contains various PA domain-containing proteins similar to S. pyogenes C5a, including, i) Vpr, a minor extracellular serine protease from Bacillus subtilis, ii) a large molecular mass collagenolytic protease from Geobacillus collagenovorans MO-1, and iii) PrtS, a cell envelope protease from Streptococcus thermophilus CNRZ 385. Proteins in this group belong to the peptidase S8 family. C5a peptidase is a cell surface serine protease which specifically inactivates C5a [a chemotactic peptide, which attracts polymorphonuclear leukocytes (PMNs)], by cleaving it to release a 7-residue carboxy-terminal fragment which contains the PMN binding site. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promotin
Probab=99.62 E-value=8.9e-15 Score=113.42 Aligned_cols=94 Identities=33% Similarity=0.485 Sum_probs=72.2
Q ss_pred ceEEEEeCCCCCCCCCCC-CCCCccceEEEEEeCCCCHHHHHHHHHHcCCcEEEEEeCCCCCCcceeeeccCCCCCccce
Q psy12056 47 EKIRMVPANPPWSCTHPT-NANTIKGHIALIERGECSFVHKAMIAESIGARGVIISDNDPDSDDFYVEMISDQSKREIHI 125 (200)
Q Consensus 47 ~~~~Lv~~~~~~aC~~~~-~~~~v~gkIvLv~RG~Csf~~Kv~~Aq~aGA~avIi~n~~~~~~~~~~~m~~~~~~~~~~I 125 (200)
..++|++.. .|.+.+ ...+++||||||+||+|+|.+|+++|+++||+|+||+|+..+. ..+..+ ....|
T Consensus 26 ~~~~lv~~g---~g~~~d~~~~dv~GkIvL~~rg~c~~~~K~~~a~~aGA~gvIi~n~~~~~----~~~~~~---~~~~i 95 (143)
T cd02133 26 KTYELVDAG---LGTPEDFEGKDVKGKIALIQRGEITFVEKIANAKAAGAVGVIIYNNVDGL----IPGTLG---EAVFI 95 (143)
T ss_pred cEEEEEEcc---CCchhccCCCCccceEEEEECCCCCHHHHHHHHHHCCCeEEEEeecCCCc----ccccCC---CCCeE
Confidence 368899863 233322 2457999999999999999999999999999999999987542 122221 23569
Q ss_pred eEEEeCHHHHHHHHHHHhcCCCeEEEEEE
Q psy12056 126 PVAFLVGKNGRVIKNALKRLNMDYALINI 154 (200)
Q Consensus 126 P~v~Is~~dG~~L~~~l~~~~~~~a~I~~ 154 (200)
|+++|++++|++|++++++ .++|.+
T Consensus 96 P~v~Is~~dG~~L~~~l~~----~~~i~~ 120 (143)
T cd02133 96 PVVFISKEDGEALKAALES----SKKLTF 120 (143)
T ss_pred eEEEecHHHHHHHHHHHhC----CCeEEE
Confidence 9999999999999999987 444554
No 18
>KOG4628|consensus
Probab=99.61 E-value=8.5e-15 Score=127.35 Aligned_cols=136 Identities=26% Similarity=0.370 Sum_probs=103.7
Q ss_pred CccceeeeccccCCcCCCCCCCcccceEEEEeCCCCCCCCCCCC----CCCccceEEEEEeCCCCHHHHHHHHHHcCCcE
Q psy12056 22 EELRYTFKIRPAKDFGSSFNGSFSGEKIRMVPANPPWSCTHPTN----ANTIKGHIALIERGECSFVHKAMIAESIGARG 97 (200)
Q Consensus 22 ~~l~~~~~~~~a~dFG~~~~~~~~~~~~~Lv~~~~~~aC~~~~~----~~~v~gkIvLv~RG~Csf~~Kv~~Aq~aGA~a 97 (200)
.+...+|.+.+|. ||+....+.. .+-++.++|.+||++..+ .......++|++||+|+|..|+++||++|++|
T Consensus 30 ~n~S~sf~d~~a~-f~~s~~~e~~--~G~l~~~ep~~aC~~i~~~p~~~~~~~~~laLI~Rg~CsFe~Kv~~AQ~aGfka 106 (348)
T KOG4628|consen 30 RNTSLSFADLPAL-FGPSLPSEGN--LGVLVVAEPLNACNPITNFPEHSTRSTSFLALIRRGGCSFEDKVLNAQRAGFKA 106 (348)
T ss_pred ccccccccCCccc-cCCccccccc--eeeeecCCCccccCccccCccCCCCCcceEEEEEccCCchHHHHhhcccccCce
Confidence 4445588999998 9998765543 678999999999999865 23456799999999999999999999999999
Q ss_pred EEEEeCCCCCCcceeeeccCCCCCccceeEEEeCHHHHHHHHHHHhcCCCeEEEEEEeecceeeccccCCCCCCccc
Q psy12056 98 VIISDNDPDSDDFYVEMISDQSKREIHIPVAFLVGKNGRVIKNALKRLNMDYALINIPVNLTYVPIHKINQPPLKMD 174 (200)
Q Consensus 98 vIi~n~~~~~~~~~~~m~~~~~~~~~~IP~v~Is~~dG~~L~~~l~~~~~~~a~I~~~~~~~~~~~~~~~~~~~~~w 174 (200)
+|+||+.... ..+.|..+. .++.|++++++...|+.|.+|.......... + +..++.++|..-
T Consensus 107 aIVynn~~~~--~lv~~~~~~--~~v~i~~~~vs~~~ge~l~~~~~~~~~~~~~--~--------~~~~~~~~ws~~ 169 (348)
T KOG4628|consen 107 AIVYNNVGSE--DLVAMASNP--SKVDIHIVFVSVFSGELLSSYAGRTEFECLL--I--------PLGFDTSPWSIL 169 (348)
T ss_pred EEEecCCCCc--hheeeccCC--ccceeEEEEEeeehHHHHHHhhcccceeeee--c--------cccccCCcchhh
Confidence 9999976432 245565443 5789999999999999999997664433221 1 334566666653
No 19
>cd02120 PA_subtilisin_like PA_subtilisin_like: Protease-associated domain containing subtilisin-like proteases. This group contains various PA domain-containing subtilisin-like proteases including melon cucumisin, Arabidopsis thaliana Ara12, a nodule specific serine protease from Alnus glutinosa ag12, members of the tomato P69 family, and tomato LeSBT2. These proteins belong to the peptidase S8 family. Cucumisin from the juice of melon fruits is a thermostable serine peptidase, with a broad substrate specificity for oligopeptides and proteins. A. thaliana Ara12 is a thermostable, extracellular serine protease, found chiefly in silique tissue and stem tissue. Ara12 is stimulated by Ca2+ ions. A. glutinosa ag12 is expressed at high levels in the nodules, and at low levels in the shoot tips; it is implicated in both symbiotic and non-symbiotic processes in plant development. The tomato P69 protease family is comprised of various protein isoforms of approximately 69KDa. These isoforms accu
Probab=99.59 E-value=8.3e-15 Score=110.54 Aligned_cols=88 Identities=22% Similarity=0.354 Sum_probs=72.6
Q ss_pred CCCCCCCC-CCCCccceEEEEEeCCC-CHHHHHHHHHHcCCcEEEEEeCCCCCCcceeeeccCCCCCccceeEEEeCHHH
Q psy12056 57 PWSCTHPT-NANTIKGHIALIERGEC-SFVHKAMIAESIGARGVIISDNDPDSDDFYVEMISDQSKREIHIPVAFLVGKN 134 (200)
Q Consensus 57 ~~aC~~~~-~~~~v~gkIvLv~RG~C-sf~~Kv~~Aq~aGA~avIi~n~~~~~~~~~~~m~~~~~~~~~~IP~v~Is~~d 134 (200)
...|++.. +..+++||||||+||.| +|.+|+.+++++||.|+|++++..+.. .+.. ....||+++|+.++
T Consensus 37 ~~~C~~~~~~~~~v~GkIVlc~~~~~~~~~~k~~~~~~~GA~gvI~~~~~~~~~----~~~~----~~~~iP~v~I~~~~ 108 (126)
T cd02120 37 ASLCLPGSLDPSKVKGKIVLCDRGGNTSRVAKGDAVKAAGGAGMILANDPTDGL----DVVA----DAHVLPAVHVDYED 108 (126)
T ss_pred cccCCCCCCChhhccccEEEEeCCCCccHHHHHHHHHHcCCcEEEEEecCCCCc----eecc----cccccceEEECHHH
Confidence 46898765 34679999999999999 999999999999999999998875421 1121 23579999999999
Q ss_pred HHHHHHHHhcCCCeEEEE
Q psy12056 135 GRVIKNALKRLNMDYALI 152 (200)
Q Consensus 135 G~~L~~~l~~~~~~~a~I 152 (200)
|+.|++|++++..++++|
T Consensus 109 g~~l~~y~~~~~~~~~~i 126 (126)
T cd02120 109 GTAILSYINSTSNPTATI 126 (126)
T ss_pred HHHHHHHHHcCCCcceeC
Confidence 999999999988887653
No 20
>cd04819 PA_2 PA_2: Protease-associated (PA) domain subgroup 2. A subgroup of PA-domain containing proteins. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins in this group contain a C-terminal RING-finger domain. Proteins into which the PA domain is inserted include the following: i) various signal peptide peptidases: such as hSPPL2a and 2b, ii) various E3 ubiquitin ligases similar to human GRAIL (gene related to anergy in lymphocytes) protein, iii) various proteins containing a RING finger motif such as Arabidopsis ReMembR-H2 protein, iv) EDEM3 (ER-degradation-enhancing mannosidase-like 3 protein), v) various plant vacuola
Probab=99.46 E-value=1.1e-12 Score=99.99 Aligned_cols=100 Identities=18% Similarity=0.181 Sum_probs=72.9
Q ss_pred ceEEEEeCCCCCCCCCCCCCCCccceEEEEEeCCC--CHHHHHHHHHHcCCcEEEEEeCCCCCCcceeeeccCCCCCccc
Q psy12056 47 EKIRMVPANPPWSCTHPTNANTIKGHIALIERGEC--SFVHKAMIAESIGARGVIISDNDPDSDDFYVEMISDQSKREIH 124 (200)
Q Consensus 47 ~~~~Lv~~~~~~aC~~~~~~~~v~gkIvLv~RG~C--sf~~Kv~~Aq~aGA~avIi~n~~~~~~~~~~~m~~~~~~~~~~ 124 (200)
..++++++. .+........+++|||||++||.| +|..|+.+|+++||+|+|++|+..+..... .......+....
T Consensus 23 ~~~~lV~~g--~G~~~d~~~~~v~GkIvlv~~g~~~~~~~~k~~~A~~~GA~avi~~~~~~g~~~~~-~~~~~~~~~~~~ 99 (127)
T cd04819 23 AKGEPVDAG--YGLPKDFDGLDLEGKIAVVKRDDPDVDRKEKYAKAVAAGAAAFVVVNTVPGVLPAT-GDEGTEDGPPSP 99 (127)
T ss_pred eeEEEEEeC--CCCHHHcCCCCCCCeEEEEEcCCCchhHHHHHHHHHHCCCEEEEEEeCCCCcCccc-ccccccCCCCCC
Confidence 468999864 332111123579999999999999 999999999999999999998775432100 111111123467
Q ss_pred eeEEEeCHHHHHHHHHHHhcCCCeE
Q psy12056 125 IPVAFLVGKNGRVIKNALKRLNMDY 149 (200)
Q Consensus 125 IP~v~Is~~dG~~L~~~l~~~~~~~ 149 (200)
||++.|+.+||++|++.++.+..+.
T Consensus 100 IP~v~Is~edg~~L~~~l~~g~~~~ 124 (127)
T cd04819 100 IPAASVSGEDGLRLARVAERNDTLV 124 (127)
T ss_pred CCEEEEeHHHHHHHHHHHhcCCceE
Confidence 9999999999999999999876553
No 21
>KOG2442|consensus
Probab=99.46 E-value=1.9e-13 Score=122.04 Aligned_cols=120 Identities=25% Similarity=0.433 Sum_probs=91.1
Q ss_pred eeccccCCcCCCCCCCccc-ceEEEEeCCCCCCCCCCCCCCCccceEEEEEeCCCCHHHHHHHHHHcCCcEEEEEeCCCC
Q psy12056 28 FKIRPAKDFGSSFNGSFSG-EKIRMVPANPPWSCTHPTNANTIKGHIALIERGECSFVHKAMIAESIGARGVIISDNDPD 106 (200)
Q Consensus 28 ~~~~~a~dFG~~~~~~~~~-~~~~Lv~~~~~~aC~~~~~~~~v~gkIvLv~RG~Csf~~Kv~~Aq~aGA~avIi~n~~~~ 106 (200)
+....++ ||....+...+ ...++..++|.+-|++..+ .++||++++.||+|+|.+|+++||++||.|++|+|+..+
T Consensus 55 ~a~~~~~-~~~t~~~~~~~a~~~~~a~~~pld~cs~~~~--kl~~~~~~v~RGnC~Ft~Ka~~Aq~aGAsaLliin~~~d 131 (541)
T KOG2442|consen 55 FAGMLAR-FGITLPSKCKAADIPHLAQVDPLDSCSTLQS--KLSGKVALVFRGNCSFTEKAKLAQAAGASALLIINNKKD 131 (541)
T ss_pred hhhhhhh-cCCcCCCCccccccchhhhcCCccccCCCCc--cccceeEEEecccceeehhhhhhhhcCceEEEEEcCchh
Confidence 4455566 88854432211 2334556789999998754 579999999999999999999999999999999998753
Q ss_pred CCcceeeeccC--CCCCccceeEEEeCHHHHHHHHHHHhcCCCeEEEEEE
Q psy12056 107 SDDFYVEMISD--QSKREIHIPVAFLVGKNGRVIKNALKRLNMDYALINI 154 (200)
Q Consensus 107 ~~~~~~~m~~~--~~~~~~~IP~v~Is~~dG~~L~~~l~~~~~~~a~I~~ 154 (200)
+..|.++ ....++.||++||++++|+.+.+...++.++++.+.-
T Consensus 132 ----~~~~~~~~~~~~~dv~IPv~mi~~~~~~~l~~~~~~~~~V~~~lYa 177 (541)
T KOG2442|consen 132 ----LLFMPCGNKETSLDVTIPVAMISYSDGRDLNKSTRSNDNVELALYA 177 (541)
T ss_pred ----hccCCCCCCCccccccceEEEEEhhhHHHHHhhhccCCeEEEEEEC
Confidence 2234432 2335789999999999999999988888888765543
No 22
>cd04815 PA_M28_2 PA_M28_2: Protease-associated (PA) domain, peptidase family M28, subfamily-2. A subfamily of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subfamilies; relatively little is known a
Probab=99.30 E-value=1.1e-11 Score=95.35 Aligned_cols=101 Identities=19% Similarity=0.149 Sum_probs=72.2
Q ss_pred ceEEEEeCCCCCCCCCCCC-CCCccceEEEEEeCCC------CHHHH-------HHHHHHcCCcEEEEEeCCCCCCcce-
Q psy12056 47 EKIRMVPANPPWSCTHPTN-ANTIKGHIALIERGEC------SFVHK-------AMIAESIGARGVIISDNDPDSDDFY- 111 (200)
Q Consensus 47 ~~~~Lv~~~~~~aC~~~~~-~~~v~gkIvLv~RG~C------sf~~K-------v~~Aq~aGA~avIi~n~~~~~~~~~- 111 (200)
+++++++..... +..+. ..+++|||||+.|+.| +|..| ..+|+++||.|+|++|..+......
T Consensus 17 vta~vv~v~~~~--~~~~~~~~~v~GKIvlv~~~~~~~~~~~~~~~k~~~r~~~~~~A~~~GA~avIv~s~~~~~~~~~~ 94 (134)
T cd04815 17 ITAEVVVVKSFD--ELKAAPAGAVKGKIVFFNQPMVRTQTGSGYGPTVAYRRRGAVEAAKKGAVAVLIRSIGTDSHRSPH 94 (134)
T ss_pred cEEEEEEECCHH--HHHhcchhhcCCeEEEecCCccccCchhhcCchhhhhhHHHHHHHhCCCEEEEEEecCcccCCCCc
Confidence 578888764221 11122 4579999999999999 99999 6999999999999998653311000
Q ss_pred eeeccCCCCCccceeEEEeCHHHHHHHHHHHhcCCCeEE
Q psy12056 112 VEMISDQSKREIHIPVAFLVGKNGRVIKNALKRLNMDYA 150 (200)
Q Consensus 112 ~~m~~~~~~~~~~IP~v~Is~~dG~~L~~~l~~~~~~~a 150 (200)
-.+.... .....||++.|+.++|++|...++++..++.
T Consensus 95 ~G~~~~~-~~~~~IP~v~is~ed~~~L~r~l~~g~~v~~ 132 (134)
T cd04815 95 TGMMSYD-DGVPKIPAAAISVEDADMLERLAARGKPIRV 132 (134)
T ss_pred CCccccC-CCCCCCCEEEechhcHHHHHHHHhCCCCeEE
Confidence 0111110 1235699999999999999999999887653
No 23
>cd02128 PA_TfR PA_TfR: Protease-associated domain containing proteins like transferrin receptor (TfR). This group contains various PA domain-containing proteins similar to human TfR1 and TfR2. TfR1 and TfR2 are type II membrane proteins, belonging to the peptidase M28 family. TfR1 is homodimeric, widely expressed, and a key player in the uptake of iron-loaded transferrin (Tf) into cells. The TfR1 homodimer binds two molecules of Tf and this complex is internalized. In addition to its role in iron uptake, TfR1 may participate in cell growth and proliferation. TfR2 also binds Tf but with a significantly lower affinity than does TfR1. TfR2 is expressed chiefly in hepatocytes, hematopoietic cells, and duodenal crypt cells; its expression overlaps with that of hereditary hemochromatosis protein (HFE). TfR2 is involved in iron homeostasis. HFE and TfR2 interact in cells. By one model for serum iron sensing, at low or basal iron concentrations, HFE and TFR1 form a complex at the plasma membra
Probab=99.16 E-value=1.5e-10 Score=93.13 Aligned_cols=97 Identities=23% Similarity=0.266 Sum_probs=68.5
Q ss_pred ceEEEEeCCCCCCCCC-CC----CCCCccceEEEEEeCCCCHHHHHHHHHHcCCcEEEEEeCCCCCCcc--------eee
Q psy12056 47 EKIRMVPANPPWSCTH-PT----NANTIKGHIALIERGECSFVHKAMIAESIGARGVIISDNDPDSDDF--------YVE 113 (200)
Q Consensus 47 ~~~~Lv~~~~~~aC~~-~~----~~~~v~gkIvLv~RG~Csf~~Kv~~Aq~aGA~avIi~n~~~~~~~~--------~~~ 113 (200)
+.++|+++. .|... +. ...+++|||||++||.|.+.+|+++|+++||+|||||++..+.... .+.
T Consensus 29 v~g~lVyvn--~G~~~Df~~L~~~gv~v~GkIvLvr~G~~~~~~Kv~~A~~~GA~gvIiy~Dp~d~~~~~~~~~~~g~~~ 106 (183)
T cd02128 29 VTGKLVYAN--YGRKKDFEDLQSVGVSVNGSVVLVRAGKISFAEKVANAEKLGAVGVLIYPDPADFPIDPSETALFGHVH 106 (183)
T ss_pred eEEEEEEcC--CCCHHHHHHHHhcCCCCCCeEEEEECCCCCHHHHHHHHHHCCCEEEEEecCHHHcCcccCcceeeccee
Confidence 578999974 33222 11 2457999999999999999999999999999999999875221000 000
Q ss_pred e-cc-----------------CCCCCccceeEEEeCHHHHHHHHHHHhcC
Q psy12056 114 M-IS-----------------DQSKREIHIPVAFLVGKNGRVIKNALKRL 145 (200)
Q Consensus 114 m-~~-----------------~~~~~~~~IP~v~Is~~dG~~L~~~l~~~ 145 (200)
+ .+ ++...-..||++-|+.+++..|++.+...
T Consensus 107 ~~~GDplTPG~ps~~~~~~~~~~~~~lP~IPs~PIS~~da~~lL~~l~G~ 156 (183)
T cd02128 107 LGTGDPYTPGFPSFNHTQFPPSQSSGLPNIPAQTISAAAAAKLLSKMGGP 156 (183)
T ss_pred ccCCCcCCCCCccccccccCcccccCCCCCCEeccCHHHHHHHHHHcCCC
Confidence 0 00 00002357999999999999999999664
No 24
>cd02121 PA_GCPII_like PA_GCPII_like: Protease-associated domain containing protein, glutamate carboxypeptidase II (GCPII)-like. This group contains various PA domain-containing proteins similar to GCPII including, GCPIII (NAALADase2) and NAALADase L. These proteins belong to the peptidase M28 family. GCPII is also known N-acetylated-alpha-linked acidic dipeptidase (NAALDase1), folate hydrolase or prostate-specific membrane antigen (PSMA). GCPII is found in various human tissues including prostate, small intestine, and the central nervous system. In the brain, GCPII is known as NAALDase1, it functions as a NAALDase hydrolyzing the neuropeptide N-acetyl-L-aspartyl-L-glutamate (alpha-NAAG), to release free glutamate. In the small intestine, GCPII releases the terminal glutamate from poly-gamma-glutamated folates. GCPII (PSMA) is a useful cancer marker; its expression is markedly increased in prostate cancer and in tumor-associated neovasculature. GCPIII hydrolyzes alpha-NAAG with a lower
Probab=98.84 E-value=2.2e-08 Score=83.02 Aligned_cols=97 Identities=25% Similarity=0.187 Sum_probs=69.9
Q ss_pred ceEEEEeCCCCCCCCCCC------CCCCccceEEEEEeCCCCHHHHHHHHHHcCCcEEEEEeCCCCCC------------
Q psy12056 47 EKIRMVPANPPWSCTHPT------NANTIKGHIALIERGECSFVHKAMIAESIGARGVIISDNDPDSD------------ 108 (200)
Q Consensus 47 ~~~~Lv~~~~~~aC~~~~------~~~~v~gkIvLv~RG~Csf~~Kv~~Aq~aGA~avIi~n~~~~~~------------ 108 (200)
+.++||++. .|...+ ...+++|||||+++|.|.+..|+++|+++||+|||||++..+..
T Consensus 45 v~g~lVyvn---yG~~~D~~~L~~~gvdv~GKIvLvr~G~~~~~~Kv~~A~~~GA~gVIiy~Dp~d~~~~~~~~~~~yP~ 121 (220)
T cd02121 45 VTAELVYAN---YGSPEDFEYLEDLGIDVKGKIVIARYGGIFRGLKVKNAQLAGAVGVIIYSDPADDGYITGENGKTYPD 121 (220)
T ss_pred ceEEEEEcC---CCcHHHHHHHhhcCCCCCCeEEEEECCCccHHHHHHHHHHcCCEEEEEEeCchhcccccccccccCCC
Confidence 578999974 454322 24589999999999999999999999999999999998753320
Q ss_pred ------cce----ee---e-ccC------------------CCCCccceeEEEeCHHHHHHHHHHHhcCC
Q psy12056 109 ------DFY----VE---M-ISD------------------QSKREIHIPVAFLVGKNGRVIKNALKRLN 146 (200)
Q Consensus 109 ------~~~----~~---m-~~~------------------~~~~~~~IP~v~Is~~dG~~L~~~l~~~~ 146 (200)
+.. +. . .+| ....-..||+.-|+..++..|++.|....
T Consensus 122 g~~~~~~~vqRgsv~~~~~~~GDplTPG~ps~~~~~r~~~~~~~~lP~IPs~PIS~~da~~lL~~L~g~~ 191 (220)
T cd02121 122 GPARPPSGVQRGSVLFMSIGPGDPLTPGYPSKPGAERRDKEESKGLPKIPSLPISYRDAQPLLKALGGPG 191 (220)
T ss_pred CCCCCCCcceecceeccccCCCCCCCCCCCCCCCCcccCcccccCCCCCCcccCCHHHHHHHHHHcCCCC
Confidence 000 00 0 000 00122469999999999999999998654
No 25
>cd04814 PA_M28_1 PA_M28_1: Protease-associated (PA) domain, peptidase family M28, subfamily-1. A subfamily of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subfamilies, relatively little is known a
Probab=98.75 E-value=4.5e-08 Score=75.91 Aligned_cols=92 Identities=15% Similarity=0.112 Sum_probs=61.9
Q ss_pred ceEEEEeCC---CCCCCCCCCC-CCCccceEEEEEeCCC------------------CHHHHHHHHHHcCCcEEEEEeCC
Q psy12056 47 EKIRMVPAN---PPWSCTHPTN-ANTIKGHIALIERGEC------------------SFVHKAMIAESIGARGVIISDND 104 (200)
Q Consensus 47 ~~~~Lv~~~---~~~aC~~~~~-~~~v~gkIvLv~RG~C------------------sf~~Kv~~Aq~aGA~avIi~n~~ 104 (200)
..++||++. ...+|...+. ..+++|||||+.||+| ++..|+.+|+++||+|||++++.
T Consensus 20 ~~aelVfvGyGi~a~~~~~dDYag~DVkGKIVlv~~g~P~~~~~~~~~~~~~~~~~~~~~~K~~~A~~~GA~gvIii~~~ 99 (142)
T cd04814 20 KDAPLVFVGYGIKAPELSWDDYAGLDVKGKVVVVLRNDPQGEPGAGDFGGKAMTYYGRWTYKYEEAARHGAAGVLIVHEL 99 (142)
T ss_pred cceeeEEecCCcCCCCCChhhcCCCCCCCcEEEEEcCCCCcccccccccccccccccCHHHHHHHHHHCCCcEEEEEeCC
Confidence 468999864 3456775543 4589999999999999 68899999999999999999987
Q ss_pred CCCCcceeeeccCCCCCcccee-EEEeCHHHHHHHHHH
Q psy12056 105 PDSDDFYVEMISDQSKREIHIP-VAFLVGKNGRVIKNA 141 (200)
Q Consensus 105 ~~~~~~~~~m~~~~~~~~~~IP-~v~Is~~dG~~L~~~ 141 (200)
+....++-.+.. . ....++ ...|+...+.+|.+.
T Consensus 100 ~~~~~p~~~~~~-~--~~~~~~~~~~i~~~~a~~l~~~ 134 (142)
T cd04814 100 APASYGWATWKN-P--AKVHPNLEAAIQRAVAVDLFEA 134 (142)
T ss_pred CcccCChhhhhc-c--cccCCceeeEecHHHHHHHHhh
Confidence 532211101111 1 112233 355777777766543
No 26
>cd04822 PA_M28_1_3 PA_M28_1_3: Protease-associated (PA) domain, peptidase family M28, subfamily-1, subgroup 3. A subgroup of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subgroups; relatively litt
Probab=98.71 E-value=2.8e-07 Score=72.22 Aligned_cols=93 Identities=17% Similarity=0.023 Sum_probs=63.8
Q ss_pred ceEEEEeCC---CCCCCCCCCC-CCCccceEEEEEeCC------------------CCHHHHHHHHHHcCCcEEEEEeCC
Q psy12056 47 EKIRMVPAN---PPWSCTHPTN-ANTIKGHIALIERGE------------------CSFVHKAMIAESIGARGVIISDND 104 (200)
Q Consensus 47 ~~~~Lv~~~---~~~aC~~~~~-~~~v~gkIvLv~RG~------------------Csf~~Kv~~Aq~aGA~avIi~n~~ 104 (200)
+.++||++. ...+|...+. ..+++|||||+.||+ |++..|+.+|+++||+|||++++.
T Consensus 20 vtg~lVfvGyGi~~~~~~~~Dy~giDVkGKIVlv~~g~P~~~~~~~~~~~~~~~~~~~~~~K~~~A~~~GA~aVIv~~d~ 99 (151)
T cd04822 20 VTAPVVFAGYGITAPELGYDDYAGLDVKGKIVLVLRHEPQEDDANSRFNGPGLTRHAGLRYKATNARRHGAAAVIVVNGP 99 (151)
T ss_pred ceEeEEEecCCcCccccchhhccCCCCCCeEEEEEcCCcccccccccccccccccccCHHHHHHHHHHCCCeEEEEEeCC
Confidence 478999874 3466765543 468999999999884 999999999999999999999986
Q ss_pred CCCCcceeeeccCCCCCccceeEEEeCHHHHHHHHHHHhc
Q psy12056 105 PDSDDFYVEMISDQSKREIHIPVAFLVGKNGRVIKNALKR 144 (200)
Q Consensus 105 ~~~~~~~~~m~~~~~~~~~~IP~v~Is~~dG~~L~~~l~~ 144 (200)
.......-.+...+ .. .++.++....+.+...+..
T Consensus 100 ~~~~~~~~~~~~~~--~~---~~~~~~~~~~~~~~~~~~~ 134 (151)
T cd04822 100 NSHSGDADRLPRFG--GT---APQRVDIAAADPWFTAAEA 134 (151)
T ss_pred cccCcccccccccC--cc---ceEEechHHHHHHhhhhhh
Confidence 53210000000000 01 1678888887777776433
No 27
>cd04820 PA_M28_1_1 PA_M28_1_1: Protease-associated (PA) domain, peptidase family M28, subfamily-1, subgroup 1. A subgroup of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subgroups; relatively litt
Probab=98.64 E-value=1e-07 Score=73.48 Aligned_cols=59 Identities=22% Similarity=0.180 Sum_probs=48.7
Q ss_pred ceEEEEeCC---CCCCCCCCCC-CCCccceEEEEEeCCCC------------HHHHHHHHHHcCCcEEEEEeCCC
Q psy12056 47 EKIRMVPAN---PPWSCTHPTN-ANTIKGHIALIERGECS------------FVHKAMIAESIGARGVIISDNDP 105 (200)
Q Consensus 47 ~~~~Lv~~~---~~~aC~~~~~-~~~v~gkIvLv~RG~Cs------------f~~Kv~~Aq~aGA~avIi~n~~~ 105 (200)
+.++||++. ...+|...+. ..+++|||||+++|.|+ +..|+++|+++||+|||++++..
T Consensus 22 v~gelVfvGyG~~~~~~~~~Dy~~iDVkGKIVlv~~g~p~~~~~~~~~~~~~~~~K~~~A~~~GA~aVIi~~d~~ 96 (137)
T cd04820 22 VEAPLVFVGYGLVAPELGHDDYAGLDVKGKIVVVLSGGPAGIPSEEGAHAHSSNEKARYAAKAGAIGMITLTTPR 96 (137)
T ss_pred ceEeEEEecCCcCccCcCHhhccCCCCCCeEEEEEcCCCCccccccccccccHHHHHHHHHHCCCeEEEEEeCCc
Confidence 578999864 3456775543 46899999999999995 78999999999999999999764
No 28
>cd02131 PA_hNAALADL2_like PA_hNAALADL2_like: Protease-associated domain containing proteins like human N-acetylated alpha-linked acidic dipeptidase-like 2 protein (hNAALADL2). This group contains various PA domain-containing proteins similar to hNAALADL2. The function of hNAALADL2 is unknown. This gene has been mapped to a chromosomal region associated with Cornelia de Lange syndrome. The significance of the PA domain to hNAALADL2 has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=98.61 E-value=1.9e-07 Score=72.76 Aligned_cols=98 Identities=14% Similarity=0.155 Sum_probs=68.2
Q ss_pred ceEEEEeCCCCCCCCCC----CCCCCccceEEEEEeCCCCHHHHHHHHHHcCCcEEEEEeCCCCCCc------cee--ee
Q psy12056 47 EKIRMVPANPPWSCTHP----TNANTIKGHIALIERGECSFVHKAMIAESIGARGVIISDNDPDSDD------FYV--EM 114 (200)
Q Consensus 47 ~~~~Lv~~~~~~aC~~~----~~~~~v~gkIvLv~RG~Csf~~Kv~~Aq~aGA~avIi~n~~~~~~~------~~~--~m 114 (200)
+++++|+++ .|-... .+.-+++|||||++.|...+..|+++||++||.|+|||.+..+... ..+ ..
T Consensus 15 Vtg~~VYvN--yG~~eDf~~L~~~V~v~GkIvi~RyG~~~RG~Kv~~A~~~GA~GviIYsDP~d~~~~~~~~~~v~~v~~ 92 (153)
T cd02131 15 LQAEVVDVQ--YGSVEDLRRIRDNMNVTNQIALLKLGQAPLLYKLSLLEEAGFGGVLLYVDPCDLPKTRHTWHQAFMVSL 92 (153)
T ss_pred eEEEEEEec--CCCHHHHHHHHhCCCccceEEEEeccCcchHHHHHHHHHCCCeEEEEecChhhccCcCCCccceEEEec
Confidence 578999974 332211 1236799999999999999999999999999999999987643210 000 00
Q ss_pred --ccC---------------CCCCccceeEEEeCHHHHHHHHHHHhcCC
Q psy12056 115 --ISD---------------QSKREIHIPVAFLVGKNGRVIKNALKRLN 146 (200)
Q Consensus 115 --~~~---------------~~~~~~~IP~v~Is~~dG~~L~~~l~~~~ 146 (200)
.+| ....-..||+.-|+..|+..|++.-.+..
T Consensus 93 ~~~GDP~TPG~PS~~~~~R~~~~~lP~IPs~PIS~~dA~~lL~~~~~~~ 141 (153)
T cd02131 93 NPGGDPSTPGYPSADQSCRQCRGNLTSLLVQPISAYLAKKLLSAPPSRR 141 (153)
T ss_pred CCCCCCCCCCCccccCcccCCcCCCCCCcccccCHHHHHHHHhCCcccC
Confidence 011 00123569999999999999988765543
No 29
>cd04821 PA_M28_1_2 PA_M28_1_2: Protease-associated (PA) domain, peptidase family M28, subfamily-1, subgroup 2. A subgroup of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subgroups; relatively litt
Probab=97.28 E-value=0.00061 Score=53.78 Aligned_cols=58 Identities=19% Similarity=0.244 Sum_probs=40.6
Q ss_pred ceEEEEeCC-----CCCCCCCCCCCCCccceEEEEEeCCCC-------------------HHHHHHHHHHcCCcEEEEEe
Q psy12056 47 EKIRMVPAN-----PPWSCTHPTNANTIKGHIALIERGECS-------------------FVHKAMIAESIGARGVIISD 102 (200)
Q Consensus 47 ~~~~Lv~~~-----~~~aC~~~~~~~~v~gkIvLv~RG~Cs-------------------f~~Kv~~Aq~aGA~avIi~n 102 (200)
..++||++. |..+-++. ...|++|||||+.+|+=. ...|.+.|+++||+|+|+++
T Consensus 22 ~~~elVFvGyGi~ape~~~dDy-~g~DVkGKiVvvl~~~P~~~~~~~~~f~~~~~~~~~~~~~K~~~A~~~GA~gvi~v~ 100 (157)
T cd04821 22 KDSPLVFVGYGIVAPEYGWDDY-KGLDVKGKTVVILVNDPGFATPDSGLFNGKAMTYYGRWTYKYEEAARQGAAGALIVH 100 (157)
T ss_pred ccCCEEEeccCccCcccCcccc-cCCCcCCcEEEEEcCCCCcccccccccCcccccccccHHHHHHHHHHCCCeEEEEEe
Confidence 367888863 11111221 146899999999987543 33599999999999999997
Q ss_pred CCC
Q psy12056 103 NDP 105 (200)
Q Consensus 103 ~~~ 105 (200)
+..
T Consensus 101 ~~~ 103 (157)
T cd04821 101 ETE 103 (157)
T ss_pred CCC
Confidence 654
No 30
>KOG3920|consensus
Probab=93.81 E-value=0.026 Score=44.50 Aligned_cols=23 Identities=52% Similarity=0.946 Sum_probs=21.8
Q ss_pred ceeccceeeeeecccCCCCCCCC
Q psy12056 176 ALINIPVNLTYVPIHKINQPPWM 198 (200)
Q Consensus 176 ~~~~~p~~~t~~~~~~~~~~~~~ 198 (200)
+.+|+|+|+|+.|-.+++||||.
T Consensus 169 a~i~IPVn~t~~P~~~~~~pPW~ 191 (193)
T KOG3920|consen 169 AKIDIPVNRTYAPWVHHQKPPWE 191 (193)
T ss_pred EEEecccccccCCchhhcCCCCc
Confidence 57999999999999999999996
No 31
>KOG2195|consensus
Probab=84.83 E-value=1.2 Score=43.19 Aligned_cols=59 Identities=27% Similarity=0.166 Sum_probs=42.5
Q ss_pred ceEEEEeCCCCCCCC--CC-CCCCCccceEEEEEeCCCCHHHHHHHHHHcCCcEEEEEeCCC
Q psy12056 47 EKIRMVPANPPWSCT--HP-TNANTIKGHIALIERGECSFVHKAMIAESIGARGVIISDNDP 105 (200)
Q Consensus 47 ~~~~Lv~~~~~~aC~--~~-~~~~~v~gkIvLv~RG~Csf~~Kv~~Aq~aGA~avIi~n~~~ 105 (200)
.++.+|+++-...-+ .+ .-.-+++|+|+|++-|.-.+..|+.||+++||.|+++|.+..
T Consensus 158 ~~~~~Vy~N~~~~~d~~~l~~~~i~~~g~i~l~r~~~i~~g~~~~na~~~~a~gviiy~d~~ 219 (702)
T KOG2195|consen 158 VTGELVYANYGRIEDFYKLEDLGINLSGKIVLARVGKIYRGKKVKNAEAAGADGVIIYTDPY 219 (702)
T ss_pred ccceEEEEecCchhhhhHhhcCcccccCceEEEEccccchhhhHhhHHHhhcCcEEEeeccc
Confidence 456777754111111 11 123457899999999989999999999999999999997654
No 32
>COG4882 Predicted aminopeptidase, Iap family [General function prediction only]
Probab=81.57 E-value=3.4 Score=37.07 Aligned_cols=71 Identities=21% Similarity=0.240 Sum_probs=46.5
Q ss_pred CCccceEEEEEeCCCCHHHHH--HHHHHcCCcEEEEEeCCCCCCcceeeeccCC---CCCccceeEEEeCHHHHHHHHH
Q psy12056 67 NTIKGHIALIERGECSFVHKA--MIAESIGARGVIISDNDPDSDDFYVEMISDQ---SKREIHIPVAFLVGKNGRVIKN 140 (200)
Q Consensus 67 ~~v~gkIvLv~RG~Csf~~Kv--~~Aq~aGA~avIi~n~~~~~~~~~~~m~~~~---~~~~~~IP~v~Is~~dG~~L~~ 140 (200)
.|+.|++++.+|-+.-...|. ..|.++||.|+||..+++.. .+...+.+ ....-.||++.+...++..+..
T Consensus 86 gD~~Gr~~Va~~pq~vdd~k~~~i~Aae~ga~a~~f~~~~~rr---iV~~Gd~gy~~~s~PtPIPva~v~en~~~y~~~ 161 (486)
T COG4882 86 GDAGGRVVVARAPQVVDDLKAAAILAAEAGAEALLFESRDPRR---IVTGGDWGYSVSSSPTPIPVAVVPENYSRYAEE 161 (486)
T ss_pred CCCCCeEEeeeccccHHHHHHHHHHHHHcCCeEEEEecCCcee---EEecccccccCCCCCCCcceEEeccCcchhhcc
Confidence 478899998887655444444 35788999999998766532 22222211 1234579999999888865543
No 33
>cd03029 GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hybrid subfamily; composed of hybrid proteins containing peroxiredoxin (PRX) and GRX domains, which is found in some pathogenic bacteria and cyanobacteria. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins. PRX-GRX hybrid proteins from Haemophilus influenza and Neisseria meningitis exhibit GSH-dependent peroxidase activity. The flow of reducing equivalents in the catalytic cycle of the hybrid protein goes from NADPH - GSH reductase - GSH - GRX domain of hybrid - PRX domain of hybrid - peroxide substrate.
Probab=46.45 E-value=52 Score=21.38 Aligned_cols=26 Identities=23% Similarity=0.370 Sum_probs=20.2
Q ss_pred eEEEEEeCCCCHHHHHHHHHH-cCCcE
Q psy12056 72 HIALIERGECSFVHKAMIAES-IGARG 97 (200)
Q Consensus 72 kIvLv~RG~Csf~~Kv~~Aq~-aGA~a 97 (200)
+|+|..+-+|++-.|++.+.+ .|...
T Consensus 2 ~v~lys~~~Cp~C~~ak~~L~~~~i~~ 28 (72)
T cd03029 2 SVSLFTKPGCPFCARAKAALQENGISY 28 (72)
T ss_pred eEEEEECCCCHHHHHHHHHHHHcCCCc
Confidence 678888899999999988665 45543
No 34
>PF08029 HisG_C: HisG, C-terminal domain; InterPro: IPR013115 ATP phosphoribosyltransferase (2.4.2.17 from EC) is the enzyme that catalyzes the first step in the biosynthesis of histidine in bacteria, fungi and plants as shown below. It is a member of the larger phosphoribosyltransferase superfamily of enzymes which catalyse the condensation of 5-phospho-alpha-D-ribose 1-diphosphate with nitrogenous bases in the presence of divalent metal ions []. ATP + 5-phospho-alpha-D-ribose 1-diphosphate = 1-(5-phospho-D-ribosyl)-ATP + diphosphate Histidine biosynthesis is an energetically expensive process and ATP phosphoribosyltransferase activity is subject to control at several levels. Transcriptional regulation is based primarily on nutrient conditions and determines the amount of enzyme present in the cell, while feedback inihibition rapidly modulates activity in response to cellular conditions. The enzyme has been shown to be inhibited by 1-(5-phospho-D-ribosyl)-ATP, histidine, ppGpp (a signal associated with adverse environmental conditions) and ADP and AMP (which reflect the overall energy status of the cell). As this pathway of histidine biosynthesis is present only in prokayrotes, plants and fungi, this enzyme is a promising target for the development of novel antimicrobial compounds and herbicides. This entry represents the C-terminal portion of ATP phosphoribosyltransferase. The enzyme itself exists in equilibrium between an active dimeric form, an inactive hexameric form and higher aggregates [, ]. Interconversion between the various forms is largely reversible and is influenced by the binding of the natural substrates and inhibitors of the enzyme. This domain is not directly involved in catalysis but appears to be responsible for the formation of hexamers induced by the binding of inhibitors to the enzyme, thus regulating activity.; GO: 0000287 magnesium ion binding, 0003879 ATP phosphoribosyltransferase activity, 0000105 histidine biosynthetic process, 0005737 cytoplasm; PDB: 1Q1K_A 1H3D_A 2VD3_B 1NH7_A 1NH8_A.
Probab=39.80 E-value=61 Score=22.18 Aligned_cols=31 Identities=10% Similarity=0.105 Sum_probs=22.6
Q ss_pred ceEEE---EEeCCCCHHHHHHHHHHcCCcEEEEEeC
Q psy12056 71 GHIAL---IERGECSFVHKAMIAESIGARGVIISDN 103 (200)
Q Consensus 71 gkIvL---v~RG~Csf~~Kv~~Aq~aGA~avIi~n~ 103 (200)
|++++ |++ ..+.+.....+++||.++++++-
T Consensus 39 ~w~AV~~vV~~--~~~~~~~~~Lk~~GA~~Ilv~pi 72 (75)
T PF08029_consen 39 DWVAVHAVVPE--KQVWDLMDKLKAAGASDILVLPI 72 (75)
T ss_dssp TEEEEEEEEEC--CCHHHHHHHHHCTT-EEEEEEE-
T ss_pred CEEEEEEEecH--HHHHHHHHHHHHcCCCEEEEEec
Confidence 55443 444 46888999999999999999863
No 35
>cd00860 ThrRS_anticodon ThrRS Threonyl-anticodon binding domain. ThrRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only.
Probab=29.75 E-value=1.5e+02 Score=19.70 Aligned_cols=34 Identities=9% Similarity=0.015 Sum_probs=26.7
Q ss_pred ceEEEEEeCCCCHHHHHHHHHHcCCcEEEEEeCC
Q psy12056 71 GHIALIERGECSFVHKAMIAESIGARGVIISDND 104 (200)
Q Consensus 71 gkIvLv~RG~Csf~~Kv~~Aq~aGA~avIi~n~~ 104 (200)
|--+.++-...++..+...|.+.|+..+|++...
T Consensus 28 g~~v~~d~~~~~~~~~~~~a~~~g~~~~iiig~~ 61 (91)
T cd00860 28 GIRVEVDLRNEKLGKKIREAQLQKIPYILVVGDK 61 (91)
T ss_pred CCEEEEECCCCCHHHHHHHHHHcCCCEEEEECcc
Confidence 5455554445799999999999999999998754
No 36
>TIGR02190 GlrX-dom Glutaredoxin-family domain. This C-terminal domain with homology to glutaredoxin is fused to an N-terminal peroxiredoxin-like domain.
Probab=27.12 E-value=1.1e+02 Score=20.31 Aligned_cols=31 Identities=16% Similarity=0.154 Sum_probs=23.4
Q ss_pred ccceEEEEEeCCCCHHHHHHHHHH-cCCcEEE
Q psy12056 69 IKGHIALIERGECSFVHKAMIAES-IGARGVI 99 (200)
Q Consensus 69 v~gkIvLv~RG~Csf~~Kv~~Aq~-aGA~avI 99 (200)
-+.+|+|..+-+|.+-.+++...+ .|...-.
T Consensus 6 ~~~~V~ly~~~~Cp~C~~ak~~L~~~gi~y~~ 37 (79)
T TIGR02190 6 KPESVVVFTKPGCPFCAKAKATLKEKGYDFEE 37 (79)
T ss_pred CCCCEEEEECCCCHhHHHHHHHHHHcCCCcEE
Confidence 367899999999999999987654 4554443
No 37
>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins. The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein
Probab=24.11 E-value=1.9e+02 Score=19.85 Aligned_cols=71 Identities=17% Similarity=0.240 Sum_probs=37.6
Q ss_pred cceEEEEEeC-----CCCHHHHHHHHH-HcCCcEEEEEeCCCCCCcceee-eccCCCCCccceeEEEeCHH---HHHHHH
Q psy12056 70 KGHIALIERG-----ECSFVHKAMIAE-SIGARGVIISDNDPDSDDFYVE-MISDQSKREIHIPVAFLVGK---NGRVIK 139 (200)
Q Consensus 70 ~gkIvLv~RG-----~Csf~~Kv~~Aq-~aGA~avIi~n~~~~~~~~~~~-m~~~~~~~~~~IP~v~Is~~---dG~~L~ 139 (200)
+.+|++...| .|.+-.|++..- +.|...-. +|-..+. . ... +.. .+ ...++|.++|... ..+.++
T Consensus 7 ~~~vvvf~k~~~~~~~Cp~C~~ak~~L~~~~i~y~~-idv~~~~-~-~~~~l~~-~~-g~~tvP~vfi~g~~iGG~~~l~ 81 (90)
T cd03028 7 ENPVVLFMKGTPEEPRCGFSRKVVQILNQLGVDFGT-FDILEDE-E-VRQGLKE-YS-NWPTFPQLYVNGELVGGCDIVK 81 (90)
T ss_pred cCCEEEEEcCCCCCCCCcHHHHHHHHHHHcCCCeEE-EEcCCCH-H-HHHHHHH-Hh-CCCCCCEEEECCEEEeCHHHHH
Confidence 3577777664 799999998755 45654333 3322211 0 000 000 01 2346788888764 345555
Q ss_pred HHHhcC
Q psy12056 140 NALKRL 145 (200)
Q Consensus 140 ~~l~~~ 145 (200)
++.++|
T Consensus 82 ~l~~~g 87 (90)
T cd03028 82 EMHESG 87 (90)
T ss_pred HHHHcC
Confidence 555544
No 38
>PF13114 RecO_N_2: RecO N terminal
Probab=21.78 E-value=91 Score=21.28 Aligned_cols=31 Identities=19% Similarity=0.429 Sum_probs=25.3
Q ss_pred CCccceeccceeEEEeCCCccceeeeccccC
Q psy12056 4 LGTTEISGENTYFEIIQPEELRYTFKIRPAK 34 (200)
Q Consensus 4 ~~~~~~~~~~~~~~V~~p~~l~~~~~~~~a~ 34 (200)
+.++.+..++.-++|+++.++.-.|..-.|+
T Consensus 6 L~~~~~~deD~IV~iLt~~~~~t~yrfyGaR 36 (71)
T PF13114_consen 6 LKIQKVRDEDLIVTILTPNSLKTLYRFYGAR 36 (71)
T ss_pred EEeEEecCCCEEEEEecCCceEEEEEEeecC
Confidence 4578899999999999999998778664444
No 39
>TIGR01368 CPSaseIIsmall carbamoyl-phosphate synthase, small subunit. This model represents the whole of the small chain of the glutamine-dependent form (EC 6.3.5.5) of carbamoyl phosphate synthase, CPSase II. The C-terminal domain has glutamine amidotransferase activity. Note that the sequence from the mammalian urea cycle form has lost the active site Cys, resulting in an ammonia-dependent form, CPSase I (EC 6.3.4.16). CPSases of pyrimidine biosynthesis, arginine biosynthesis, and the urea cycle may be encoded by one or by several genes, depending on the species.
Probab=21.74 E-value=84 Score=28.03 Aligned_cols=104 Identities=13% Similarity=0.134 Sum_probs=59.7
Q ss_pred ceEEEEeCCCCCCCCCCCCCCCccceEEEEE---eCCCCHHHHHHHHHHcCCcEEEEEeCCCCCCccee-eeccCCCCCc
Q psy12056 47 EKIRMVPANPPWSCTHPTNANTIKGHIALIE---RGECSFVHKAMIAESIGARGVIISDNDPDSDDFYV-EMISDQSKRE 122 (200)
Q Consensus 47 ~~~~Lv~~~~~~aC~~~~~~~~v~gkIvLv~---RG~Csf~~Kv~~Aq~aGA~avIi~n~~~~~~~~~~-~m~~~~~~~~ 122 (200)
..+++|+.+.-.|=+..-..++..|.|++.- -|+......-....+--++|+|+-+..... +.+- .+.-+..-..
T Consensus 22 ~~GEvvF~T~mtGYqE~ltDPSy~gQi~~~T~P~iGNyG~~~~~~es~~~~~~g~iv~~~~~~~-s~~~~~~~l~~~l~~ 100 (358)
T TIGR01368 22 VAGEVVFNTGMTGYQEILTDPSYKGQIVVFTYPLIGNYGVNDEDAESKGIHVSGLVVRELSDRY-SNWRATESLDQFLKR 100 (358)
T ss_pred EEEEEEEeCCCCCCChhhcCCcccchhhhhccCCcceeCCCchhhcccCCcEEEEEECCCCCCC-CcccccCCHHHHHHH
Confidence 3689999876666666433357889988754 354443333334445667888886544221 1110 0000111123
Q ss_pred cceeEEEeCHHHHHHHHHHHhcCCCeEEEEE
Q psy12056 123 IHIPVAFLVGKNGRVIKNALKRLNMDYALIN 153 (200)
Q Consensus 123 ~~IP~v~Is~~dG~~L~~~l~~~~~~~a~I~ 153 (200)
-.|| .|+.-|-++|...+.......+.|.
T Consensus 101 ~~i~--gi~gvDTR~lt~~iR~~G~~~~~i~ 129 (358)
T TIGR01368 101 HGIP--GIYGVDTRALVKKIREKGTMKGVIS 129 (358)
T ss_pred CCCc--eEeCCcHHHHHHHHHhcCCeeEEEe
Confidence 3454 5667778888888888888777664
No 40
>cd01356 AcnX_swivel Putative Aconitase X swivel domain. It is predicted by comparative genomic analysis. The proteins are mainly found in archaea and proteobacteria. They are distantly related to Aconitase family of proteins by sequence similarity and seconary structure prediction. The functions have not yet been experimentally characterized. Thus, the prediction should be treated with caution.
Probab=20.84 E-value=2.4e+02 Score=21.23 Aligned_cols=37 Identities=14% Similarity=0.211 Sum_probs=24.0
Q ss_pred CCCccceEEEEE--eCCCCHHHHHHHHHHcCC-cEEEEEe
Q psy12056 66 ANTIKGHIALIE--RGECSFVHKAMIAESIGA-RGVIISD 102 (200)
Q Consensus 66 ~~~v~gkIvLv~--RG~Csf~~Kv~~Aq~aGA-~avIi~n 102 (200)
..+++|||++.. ||.|.-..-...+...|- -+.||..
T Consensus 39 G~si~gkILv~p~~kGSt~gs~vl~~l~~~g~aP~AiI~~ 78 (123)
T cd01356 39 GESIAGKVLVLPGGKGSTVGSYVLYELARNGTAPAAIVFE 78 (123)
T ss_pred CCcccceEEEecCCCCcchHHHHHHHHHHcCCCCeeEeec
Confidence 357899999886 678875555555555544 3555544
Done!