Query psy12056
Match_columns 200
No_of_seqs 218 out of 1388
Neff 7.3
Searched_HMMs 29240
Date Fri Aug 16 17:31:00 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy12056.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/12056hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3icu_A E3 ubiquitin-protein li 99.9 5.2E-22 1.8E-26 159.9 17.3 140 7-153 30-184 (194)
2 3iib_A Peptidase M28; YP_92679 99.1 9.1E-10 3.1E-14 98.5 13.3 105 47-154 106-225 (444)
3 2ek8_A Aminopeptidase; metallo 99.1 2.2E-09 7.4E-14 95.2 14.7 90 47-143 93-182 (421)
4 3i6s_A Subtilisin-like proteas 99.1 3E-10 1E-14 106.2 9.3 97 48-155 258-357 (649)
5 3fed_A Glutamate carboxypeptid 98.9 3E-09 1E-13 100.2 8.4 96 47-144 127-268 (707)
6 3kas_A Transferrin receptor pr 98.8 8.9E-09 3.1E-13 96.0 7.7 96 47-144 108-231 (640)
7 1xf1_A C5A peptidase, SCP; hyd 98.8 8.2E-08 2.8E-12 93.0 13.5 94 48-157 261-354 (926)
8 1y9z_A Alkaline serine proteas 98.4 4.2E-07 1.4E-11 81.0 8.1 84 58-144 258-350 (441)
9 3vta_A Cucumisin; subtilisin-l 97.1 0.00076 2.6E-08 62.5 7.0 80 58-152 268-348 (621)
10 4f87_A Plycb; lysin, bacteriop 30.6 27 0.00092 21.9 1.9 20 124-143 52-71 (72)
11 3cm8_B Peptide from RNA-direct 24.4 22 0.00076 19.2 0.6 26 3-28 2-27 (30)
No 1
>3icu_A E3 ubiquitin-protein ligase RNF128; E3 ligase, energy, PA domain, transmembrane,protein turnover conjugation pathway; HET: NAG; 2.10A {Homo sapiens}
Probab=99.89 E-value=5.2e-22 Score=159.93 Aligned_cols=140 Identities=19% Similarity=0.180 Sum_probs=107.0
Q ss_pred cceeccceeEEEeCCCc---cceeeeccccCCcCCCCCCCcccceEEEEeCC---CCCCCCCCCCCC--------Cccce
Q psy12056 7 TEISGENTYFEIIQPEE---LRYTFKIRPAKDFGSSFNGSFSGEKIRMVPAN---PPWSCTHPTNAN--------TIKGH 72 (200)
Q Consensus 7 ~~~~~~~~~~~V~~p~~---l~~~~~~~~a~dFG~~~~~~~~~~~~~Lv~~~---~~~aC~~~~~~~--------~v~gk 72 (200)
.|..-..+.++...|.. ....+..-+++ ||...+... +.+.|+.+. +..||++.++.. ..+||
T Consensus 30 ~~~~~A~vn~sy~d~~~~~n~t~~~~~e~a~-FG~~~p~~~--v~G~lv~~~~~~~~~GC~~~~~~~~~~~~~~~~~~gk 106 (194)
T 3icu_A 30 EAVWTAYLNVSWRVPHTGVNRTVWELSEEGV-YGQDSPLEP--VAGVLVPPDGPGALNACNPHTNFTVPTVWGSTVQVSW 106 (194)
T ss_dssp SCEEEEEEEEEEECCSSCTTCEEEEEEEEEE-ECTTSCCSC--EEEEEECBSSTTCTTCCSTTCCBCCCBCTTSSCBCCE
T ss_pred eeEEEEEEEEEEECCCCCccceeeecccccc-cCCCCCCCC--cEEEEEecCCCCCcCCCCCCccccCCcccccccCCCe
Confidence 45566677777777754 22346677898 999876543 367888753 789999976421 14689
Q ss_pred EEEEEeCC-CCHHHHHHHHHHcCCcEEEEEeCCCCCCcceeeeccCCCCCccceeEEEeCHHHHHHHHHHHhcCCCeEEE
Q psy12056 73 IALIERGE-CSFVHKAMIAESIGARGVIISDNDPDSDDFYVEMISDQSKREIHIPVAFLVGKNGRVIKNALKRLNMDYAL 151 (200)
Q Consensus 73 IvLv~RG~-Csf~~Kv~~Aq~aGA~avIi~n~~~~~~~~~~~m~~~~~~~~~~IP~v~Is~~dG~~L~~~l~~~~~~~a~ 151 (200)
||||+||+ |+|.+|++|||++||+|+||||+.... ...+.|..++ ...||+++|++++|+.|+++|+++..++.+
T Consensus 107 IaLV~RG~~CsF~~Kv~nAq~aGA~avIIyNn~~~g-~~~~~m~~~~---~~~IPsv~Is~~~G~~L~~~L~~G~~Vtvt 182 (194)
T 3icu_A 107 LALIQRGGGCTFADKIHLAYERGASGAVIFNFPGTR-NEVIPMSHPG---AVDIVAIMIGNLKGTKILQSIQRGIQVTMV 182 (194)
T ss_dssp EEEEESCTTCCHHHHHHHHHHTTCSEEEEECCTTCT-TCCCCCCCTT---CCSSEEEEECHHHHHHHHHHHHTTCCEEEE
T ss_pred EEEEECCCCcCHHHHHHHHHHCCCcEEEEEeCCCCC-CceeeecCCC---CCceeEEEECHHHHHHHHHHHHCCCeEEEE
Confidence 99999999 999999999999999999999985221 1245676543 347999999999999999999999888765
Q ss_pred EE
Q psy12056 152 IN 153 (200)
Q Consensus 152 I~ 153 (200)
|.
T Consensus 183 i~ 184 (194)
T 3icu_A 183 IE 184 (194)
T ss_dssp EE
T ss_pred EE
Confidence 53
No 2
>3iib_A Peptidase M28; YP_926796.1, structural genomics, J center for structural genomics, JCSG, protein structure INI PSI-2; HET: PGE; 1.70A {Shewanella amazonensis SB2B}
Probab=99.10 E-value=9.1e-10 Score=98.51 Aligned_cols=105 Identities=21% Similarity=0.226 Sum_probs=74.6
Q ss_pred ceEEEEeCCCCCCCCCCCCCCCccceEEEEEeCCCC---------HHHH----HHHHHHcCCcEEEEEeCCCCCCccee-
Q psy12056 47 EKIRMVPANPPWSCTHPTNANTIKGHIALIERGECS---------FVHK----AMIAESIGARGVIISDNDPDSDDFYV- 112 (200)
Q Consensus 47 ~~~~Lv~~~~~~aC~~~~~~~~v~gkIvLv~RG~Cs---------f~~K----v~~Aq~aGA~avIi~n~~~~~~~~~~- 112 (200)
++++||+......|... ...+++|||||+.|+.|. |..| +.+|+++||+|+|++|+..+......
T Consensus 106 vta~lV~v~~~~~~~~~-~~~dvkGKIVlv~~~~~~~~~~~~y~~~~~kr~~~a~~A~~aGA~avIi~~~~~~~~~~~~t 184 (444)
T 3iib_A 106 LSATIVRFDTLQDLQNA-EAGSLNDKIAFIDAKTERHRDGKGYGQTASGRSRGAVAAAEKGAVGIIIRSIGTDHDRMAHT 184 (444)
T ss_dssp EEEEEEEESSHHHHHTS-CTTTTTTCEEEECCCCCCCTTCHHHHHHHHHHHHHHHHHHHTTCSEEEEECSCSCCSSCCCC
T ss_pred eEEEEEecCCHHHHhhc-cccccCccEEEEeCCCCCCcccccccchhhhhhhHHHHHHHCCCeEEEEEccCCcccccccC
Confidence 68899987644445443 235799999999999995 6666 45799999999999987543211000
Q ss_pred -eeccCCCCCccceeEEEeCHHHHHHHHHHHhcCCCeEEEEEE
Q psy12056 113 -EMISDQSKREIHIPVAFLVGKNGRVIKNALKRLNMDYALINI 154 (200)
Q Consensus 113 -~m~~~~~~~~~~IP~v~Is~~dG~~L~~~l~~~~~~~a~I~~ 154 (200)
.|... .....||++.|+.++|+.|++.++++..++..+..
T Consensus 185 g~~~~~--~~~~~IP~~~Is~~da~~L~~~l~~g~~~~v~l~~ 225 (444)
T 3iib_A 185 GMMRYE--EGVTAIPAAAISNPDADLINAMLKRDKEVVISLEL 225 (444)
T ss_dssp CBCCCC--TTSCCCCEEEECHHHHHHHHHHHTTTCCCEEEEEE
T ss_pred CccccC--CCCCCCCeEEecHHHHHHHHHHHhCCCCeEEEEEE
Confidence 11111 13467999999999999999999888766555444
No 3
>2ek8_A Aminopeptidase; metalloproteinase, hydrolase; 1.80A {Aneurinibacillus SP} PDB: 2ek9_A*
Probab=99.08 E-value=2.2e-09 Score=95.21 Aligned_cols=90 Identities=22% Similarity=0.332 Sum_probs=67.6
Q ss_pred ceEEEEeCCCCCCCCCCCCCCCccceEEEEEeCCCCHHHHHHHHHHcCCcEEEEEeCCCCCCcceeeeccCCCCCcccee
Q psy12056 47 EKIRMVPANPPWSCTHPTNANTIKGHIALIERGECSFVHKAMIAESIGARGVIISDNDPDSDDFYVEMISDQSKREIHIP 126 (200)
Q Consensus 47 ~~~~Lv~~~~~~aC~~~~~~~~v~gkIvLv~RG~Csf~~Kv~~Aq~aGA~avIi~n~~~~~~~~~~~m~~~~~~~~~~IP 126 (200)
++++|+++... .++.+. ..+++|||||++||+|+|..|+.+|+++||+|+||+++..+... ....+ .....||
T Consensus 93 v~a~lv~~~~G-~~~D~~-~~dv~GkIvlv~~g~~~~~~k~~~A~~~GA~gvIi~~~~~~~~~---g~~~~--~~~~~IP 165 (421)
T 2ek8_A 93 VTAELVYVGLG-TTADVA-GKDLNGKIALIQRGNISFADKVRNAAKQGAKAVIIYNNTDGKLN---GTLGG--SDASFVA 165 (421)
T ss_dssp EEEEEEECTTC-CTTTTT-TSCCTTSEEEEECCSSCHHHHHHHHHHTTCSEEEEECSSSSCCC---CBCSS--CCTTCCE
T ss_pred cceEEEECCCC-ChhhcC-CCCcCceEEEEeCCCCCHHHHHHHHHHCCCeEEEEEeCCCcccc---cccCC--CCCCCcc
Confidence 57889886422 222221 23799999999999999999999999999999999998643211 11111 1346799
Q ss_pred EEEeCHHHHHHHHHHHh
Q psy12056 127 VAFLVGKNGRVIKNALK 143 (200)
Q Consensus 127 ~v~Is~~dG~~L~~~l~ 143 (200)
++.|+.++++.|++.+.
T Consensus 166 ~~~Is~~~a~~L~~~l~ 182 (421)
T 2ek8_A 166 AVGITKQEGDALAANLR 182 (421)
T ss_dssp EEEECHHHHHHHHHHHH
T ss_pred EEEeCHHHHHHHHHHhh
Confidence 99999999999999984
No 4
>3i6s_A Subtilisin-like protease; PA-domain, FN3-domain, hydrolase; HET: NAG FUC; 2.50A {Solanum lycopersicum} PDB: 3i74_A*
Probab=99.07 E-value=3e-10 Score=106.15 Aligned_cols=97 Identities=13% Similarity=0.119 Sum_probs=81.5
Q ss_pred eEEEEeCCCCCCCCCCC-CCCCc--cceEEEEEeCCCCHHHHHHHHHHcCCcEEEEEeCCCCCCcceeeeccCCCCCccc
Q psy12056 48 KIRMVPANPPWSCTHPT-NANTI--KGHIALIERGECSFVHKAMIAESIGARGVIISDNDPDSDDFYVEMISDQSKREIH 124 (200)
Q Consensus 48 ~~~Lv~~~~~~aC~~~~-~~~~v--~gkIvLv~RG~Csf~~Kv~~Aq~aGA~avIi~n~~~~~~~~~~~m~~~~~~~~~~ 124 (200)
..+|+++.....|.+.. +...+ +||||||+||.|.+.+|..+++++||.|+|++|+.. . . .. ....
T Consensus 258 ~~plv~~~~~~~C~~~~l~~~~vdl~GkIvlc~~g~~~~~~k~~~~~~~Ga~g~i~~n~~~---~-~---~~----~~~~ 326 (649)
T 3i6s_A 258 DSPVIYNKTLSDCSSEELLSQVENPENTIVICDDNGDFSDQMRIITRARLKAAIFISEDPG---V-F---RS----ATFP 326 (649)
T ss_dssp EEEEECCTTTTTCCCHHHHTTSSSGGGCEEEECCCSCHHHHHHHHHHHTCSEEEEECCCGG---G-G---GC----CCCC
T ss_pred ceeeEecccccccccccccccccccCCcEEEEeCCCccHHHHHHHHHhcCceEEEEecCcc---c-c---cc----ccCc
Confidence 57888887778998753 33445 999999999999999999999999999999998762 1 1 11 2357
Q ss_pred eeEEEeCHHHHHHHHHHHhcCCCeEEEEEEe
Q psy12056 125 IPVAFLVGKNGRVIKNALKRLNMDYALINIP 155 (200)
Q Consensus 125 IP~v~Is~~dG~~L~~~l~~~~~~~a~I~~~ 155 (200)
+|+++|+.++|+.|++|++++.+++++|.+.
T Consensus 327 ~P~~~v~~~~g~~i~~yi~s~~~~~a~i~~~ 357 (649)
T 3i6s_A 327 NPGVVVNKKEGKQVINYVKNSVTPTATITFQ 357 (649)
T ss_dssp SCEEEECHHHHHHHHHHHHTCSSCEEEEEEE
T ss_pred CCEEEEcHHHHHHHHHHHhcCCCceEEEeec
Confidence 8999999999999999999999999998874
No 5
>3fed_A Glutamate carboxypeptidase III; metallopeptidase, bimetallic active site, N-glycosylation, C cation, chloride anion, zinc IONS, dipept glycoprotein; HET: NAG BIX; 1.29A {Homo sapiens} PDB: 3fec_A* 3fee_A* 3ff3_A* 2c6c_A* 2c6g_A* 2c6p_A* 2cij_A* 2jbj_A* 2jbk_A* 3rbu_A* 3bi1_A* 2oot_A* 2pvv_A* 2pvw_A* 2xei_A* 2or4_A* 3bi0_A* 3bhx_A* 3d7d_A* 3d7f_A* ...
Probab=98.89 E-value=3e-09 Score=100.24 Aligned_cols=96 Identities=20% Similarity=0.140 Sum_probs=69.2
Q ss_pred ceEEEEeCCCCCCCCCCC-----C-CCCccceEEEEEeCCCCHHHHHHHHHHcCCcEEEEEeCCCCC-------------
Q psy12056 47 EKIRMVPANPPWSCTHPT-----N-ANTIKGHIALIERGECSFVHKAMIAESIGARGVIISDNDPDS------------- 107 (200)
Q Consensus 47 ~~~~Lv~~~~~~aC~~~~-----~-~~~v~gkIvLv~RG~Csf~~Kv~~Aq~aGA~avIi~n~~~~~------------- 107 (200)
++++||++. .||.... . ..+++|||||++||+|+|..|+.+|+++||+||||||+..+.
T Consensus 127 v~g~lV~v~--~G~~~Df~~L~~~~~~~v~GkIvlv~~G~~~~~~Kv~~A~~~GA~gviiy~dp~d~~~~g~~~yP~~~~ 204 (707)
T 3fed_A 127 PEGDLVYVN--YARTEDFFKLEREMGINCTGKIVIARYGKIFRGNKVKNAMLAGAIGIILYSDPADYFAPEVQPYPKGWN 204 (707)
T ss_dssp CEECEEECT--TCCHHHHHHHHHTSCCCCTTCEEEEECCSSCHHHHHHHHHHTTCSEEEEECCHHHHCCTTCCBTTTSSB
T ss_pred eEEEEEEec--CCchhhHHHHHhccCCCCCCeEEEEECCCCCHhHHHHHHHHCCCEEEEEEcCchhccccccccCCCCcc
Confidence 678999984 6774321 1 457999999999999999999999999999999999863200
Q ss_pred -----C-cceee-ec--cCCC------------------CCccceeEEEeCHHHHHHHHHHHhc
Q psy12056 108 -----D-DFYVE-MI--SDQS------------------KREIHIPVAFLVGKNGRVIKNALKR 144 (200)
Q Consensus 108 -----~-~~~~~-m~--~~~~------------------~~~~~IP~v~Is~~dG~~L~~~l~~ 144 (200)
. ...+. +. +|.. .....||++-|+..+|+.|++.+..
T Consensus 205 ~p~~~vqrGsv~~~~~~GDp~TPG~ps~~~~~r~~~~~~~~~p~IP~~pIS~~da~~Ll~~l~g 268 (707)
T 3fed_A 205 LPGTAAQRGNVLNLNGAGDPLTPGYPAKEYTFRLDVEEGVGIPRIPVHPIGYNDAEILLRYLGG 268 (707)
T ss_dssp CCTTCCCCCCCCCCTTCCSTTCTTSCCCTTCCCCCGGGCTTCCSSCEEEECHHHHHHHHHTBCB
T ss_pred CCCccccccceecccCCCCCCCCCCcccCCCcccChhhccCCCCCCeEecCHHHHHHHHHHhcC
Confidence 0 00000 00 1100 0136899999999999999998864
No 6
>3kas_A Transferrin receptor protein 1; transferrin receptor 1, arenavirus, cell MEMB disulfide bond, endocytosis, HOST-virus inter receptor, secreted, transmembrane; HET: NAG FUC BMA MAN; 2.40A {Homo sapiens} PDB: 1de4_C* 3s9l_A* 3s9m_A* 3s9n_A* 1cx8_A* 1suv_A 2nsu_A
Probab=98.78 E-value=8.9e-09 Score=96.03 Aligned_cols=96 Identities=21% Similarity=0.275 Sum_probs=68.0
Q ss_pred ceEEEEeCCCCCCCCCC-CC-CCCccceEEEEEeCCCCHHHHHHHHHHcCCcEEEEEeCCCCCCc--------ceeee-c
Q psy12056 47 EKIRMVPANPPWSCTHP-TN-ANTIKGHIALIERGECSFVHKAMIAESIGARGVIISDNDPDSDD--------FYVEM-I 115 (200)
Q Consensus 47 ~~~~Lv~~~~~~aC~~~-~~-~~~v~gkIvLv~RG~Csf~~Kv~~Aq~aGA~avIi~n~~~~~~~--------~~~~m-~ 115 (200)
++++||++. .||... .. ..+++|||||++||+|.|..|+.+|+++||+||||+++..+... ..+.. .
T Consensus 108 v~g~lV~vg--~G~~~D~~~l~vdv~GkIvlv~~g~~~~~~K~~~A~~~GA~gvii~~~~~~~~~~~~~~~~~G~~~~~~ 185 (640)
T 3kas_A 108 VTGKLVHAN--FGTKKDFEDLYTPVNGSIVIVRAGKITFAEKVANAESLNAIGVLIYMDQTKFPIVNAELSFFGHAHLGT 185 (640)
T ss_dssp EEECEEECT--TCCHHHHHTCSSCCTTSEEEEESCSSCHHHHHHHHHTTTCSEEEEECCTTTCCCSCTTCCCCEECCSSS
T ss_pred eEEEEEEec--CCChhhHHHhhcccCCcEEEEecCCCCHHHHHHHHHHCCCeEEEEEeccccccccccccccccccccCC
Confidence 578999974 666432 11 14799999999999999999999999999999999987642110 00000 0
Q ss_pred cCC-----------------CCCccceeEEEeCHHHHHHHHHHHhc
Q psy12056 116 SDQ-----------------SKREIHIPVAFLVGKNGRVIKNALKR 144 (200)
Q Consensus 116 ~~~-----------------~~~~~~IP~v~Is~~dG~~L~~~l~~ 144 (200)
+|. ......||++.|+.++++.|++.+..
T Consensus 186 Gdp~tpg~ps~~~~~~~~~~~~~~p~IP~~~Is~~~a~~Ll~~l~g 231 (640)
T 3kas_A 186 GDPYTPGFPSFNHTQFPPSRSSGLPNIPVQTISRAAAEKLFGNMEG 231 (640)
T ss_dssp SCSCCCSSCC---CCCCCCSSCCCCSSCEEECCHHHHHHHHTTEEE
T ss_pred CCCCCCCcccccccccccccccCCCCCCEEecCHHHHHHHHHHccC
Confidence 000 01134799999999999999987753
No 7
>1xf1_A C5A peptidase, SCP; hydrolase; HET: CIT; 1.90A {Streptococcus pyogenes} PDB: 3eif_A*
Probab=98.75 E-value=8.2e-08 Score=92.96 Aligned_cols=94 Identities=31% Similarity=0.410 Sum_probs=70.6
Q ss_pred eEEEEeCCCCCCCCCCCCCCCccceEEEEEeCCCCHHHHHHHHHHcCCcEEEEEeCCCCCCcceeeeccCCCCCccceeE
Q psy12056 48 KIRMVPANPPWSCTHPTNANTIKGHIALIERGECSFVHKAMIAESIGARGVIISDNDPDSDDFYVEMISDQSKREIHIPV 127 (200)
Q Consensus 48 ~~~Lv~~~~~~aC~~~~~~~~v~gkIvLv~RG~Csf~~Kv~~Aq~aGA~avIi~n~~~~~~~~~~~m~~~~~~~~~~IP~ 127 (200)
..+|+++. .+|.+... .+++||||||+||.|+|.+|+.+++++||.++|++|+..+.. .+.+. ....||+
T Consensus 261 ~~~lv~~~--~g~~~~~~-~~v~Gkivl~~rg~~~~~~k~~~~~~~Ga~gvi~~n~~~~~~--~~~~~-----~~~~iP~ 330 (926)
T 1xf1_A 261 AYDYAYAN--RGTKEDDF-KDVKGKIALIERGDIDFKDKIAKAKKAGAVGVLIYDNQDKGF--PIELP-----NVDQMPA 330 (926)
T ss_dssp CEEEEECT--TSCSTTTT-TTCTTSEEEEECCSSCHHHHHHHHHHTTCSEEEEECSSTTCC--CEECC-----CSTTCCE
T ss_pred eEEEEECC--CCCCccch-hhcCCeEEEEECCCCCHHHHHHHHHhCCCcEEEEEecCCCCc--ccccC-----ccccccE
Confidence 46777754 57876544 589999999999999999999999999999999998775421 11211 2357899
Q ss_pred EEeCHHHHHHHHHHHhcCCCeEEEEEEeec
Q psy12056 128 AFLVGKNGRVIKNALKRLNMDYALINIPVN 157 (200)
Q Consensus 128 v~Is~~dG~~L~~~l~~~~~~~a~I~~~~~ 157 (200)
++|+.++|..|+. + +.++|.|+..
T Consensus 331 ~~i~~~~g~~l~~----~--~~~ti~~~~~ 354 (926)
T 1xf1_A 331 AFISRKDGLLLKD----N--PQKTITFNAT 354 (926)
T ss_dssp EEECHHHHHHHHH----C--SSCEEEECSS
T ss_pred EEEeHHHHHHHHh----C--CceEEEeccc
Confidence 9999999988874 2 3455666433
No 8
>1y9z_A Alkaline serine protease; subtilisin-like alpha/beta domain, insert beta barrel domain hydrolase; HET: PMS; 1.40A {Pseudoalteromonas SP} PDB: 1v6c_A* 1wvm_A*
Probab=98.44 E-value=4.2e-07 Score=80.98 Aligned_cols=84 Identities=19% Similarity=0.274 Sum_probs=63.0
Q ss_pred CCCCCCC---CCCCccceEEEEEeCCC-----CHHHHHHHHHHcCCcEEEEEeCCCCCCcc-eeeeccCCCCCccceeEE
Q psy12056 58 WSCTHPT---NANTIKGHIALIERGEC-----SFVHKAMIAESIGARGVIISDNDPDSDDF-YVEMISDQSKREIHIPVA 128 (200)
Q Consensus 58 ~aC~~~~---~~~~v~gkIvLv~RG~C-----sf~~Kv~~Aq~aGA~avIi~n~~~~~~~~-~~~m~~~~~~~~~~IP~v 128 (200)
.+|.+.. +..+++|||+||+||+| .+..|+.+++++||.++|++|+....... .+.+.. .....||++
T Consensus 258 ~~C~~~~~~~~~~~~~gkivl~~rg~~~~~~~~~~~~~~~~~~aGa~gvii~~~~~~~g~~~~~~~~~---~~~~~~p~~ 334 (441)
T 1y9z_A 258 AECTVNGTSFSCGNMANKICLVERVGNQGSSYPEINSTKACKTAGAKGIIVYSNSALPGLQNPFLVDA---NSDITVPSV 334 (441)
T ss_dssp EEEEEETTEEECCCCTTEEEEEECCSCSSSSCTHHHHHHHHHHTTCSEEEEECCTTSCSCCCCEEECT---TCCCCSCEE
T ss_pred hccccccccccCCCccccEEEEeccccCcccccHHHHHHHHHhcCCeEEEEEeCCCcccccccccccc---ccCccccEE
Confidence 4576532 34679999999999987 79999999999999999999876432110 011111 134579999
Q ss_pred EeCHHHHHHHHHHHhc
Q psy12056 129 FLVGKNGRVIKNALKR 144 (200)
Q Consensus 129 ~Is~~dG~~L~~~l~~ 144 (200)
+|+.++|+.|++++.+
T Consensus 335 ~v~~~~g~~l~~~~~~ 350 (441)
T 1y9z_A 335 SVDRATGLALKAKLGQ 350 (441)
T ss_dssp EECHHHHHHHHTTTTS
T ss_pred EEeHHHHHHHHHHhcC
Confidence 9999999999998854
No 9
>3vta_A Cucumisin; subtilisin-like fold, serine protease, hydrolase; HET: DFP NAG FUC BMA MAN; 2.75A {Cucumis melo}
Probab=97.12 E-value=0.00076 Score=62.51 Aligned_cols=80 Identities=25% Similarity=0.311 Sum_probs=62.9
Q ss_pred CCCCCCC-CCCCccceEEEEEeCCCCHHHHHHHHHHcCCcEEEEEeCCCCCCcceeeeccCCCCCccceeEEEeCHHHHH
Q psy12056 58 WSCTHPT-NANTIKGHIALIERGECSFVHKAMIAESIGARGVIISDNDPDSDDFYVEMISDQSKREIHIPVAFLVGKNGR 136 (200)
Q Consensus 58 ~aC~~~~-~~~~v~gkIvLv~RG~Csf~~Kv~~Aq~aGA~avIi~n~~~~~~~~~~~m~~~~~~~~~~IP~v~Is~~dG~ 136 (200)
..|.+.. +...++|||+||+| .+..|..+++.+|+.++|++++..+.. ....+|++.++..+|.
T Consensus 268 ~~~~~~~~~~~~v~gkivl~~~---~~~~~~~~~~~~Ga~gvi~~~~~~~~~------------~~~~lP~~~v~~~~g~ 332 (621)
T 3vta_A 268 RFCTDKSVNPNLLKGKIVVCEA---SFGPHEFFKSLDGAAGVLMTSNTRDYA------------DSYPLPSSVLDPNDLL 332 (621)
T ss_dssp TTTCTTCSCGGGTTTSEEECSS---CCCHHHHHHHHTTCSEEEEECSCCSSC------------CCCSSSEEEECHHHHH
T ss_pred ccccccccccccccceEEEEec---CCChhHHhhhhcceeEEEEEecCCCcc------------cccccceEEECHHHHH
Confidence 3466543 45578999999985 456788899999999999998764311 2346899999999999
Q ss_pred HHHHHHhcCCCeEEEE
Q psy12056 137 VIKNALKRLNMDYALI 152 (200)
Q Consensus 137 ~L~~~l~~~~~~~a~I 152 (200)
.++.++.....+.+.+
T Consensus 333 ~i~~~~~~~~~~~a~~ 348 (621)
T 3vta_A 333 ATLRYIYSIRSPGATI 348 (621)
T ss_dssp HHHHHHHHHSSCCEEE
T ss_pred HHHHHHhccCCcceEE
Confidence 9999999988888765
No 10
>4f87_A Plycb; lysin, bacteriophage, antimicrobial protein, viral protein; 1.40A {Streptococcus phage C1} PDB: 4f88_A
Probab=30.60 E-value=27 Score=21.91 Aligned_cols=20 Identities=25% Similarity=0.345 Sum_probs=18.0
Q ss_pred ceeEEEeCHHHHHHHHHHHh
Q psy12056 124 HIPVAFLVGKNGRVIKNALK 143 (200)
Q Consensus 124 ~IP~v~Is~~dG~~L~~~l~ 143 (200)
-||++-|++.|-++|+++++
T Consensus 52 iipsinisksdveairkamk 71 (72)
T 4f87_A 52 IIPSINISKSDVEAIRKAMK 71 (72)
T ss_dssp TSCEEECCGGGHHHHHHHHC
T ss_pred hCccccccHhHHHHHHHHhc
Confidence 48999999999999998875
No 11
>3cm8_B Peptide from RNA-directed RNA polymerase catalytic subunit; protein-peptide complex, nucleotide-binding, nucleotidyltransferase; 2.90A {Influenza a virus}
Probab=24.43 E-value=22 Score=19.22 Aligned_cols=26 Identities=19% Similarity=0.505 Sum_probs=20.3
Q ss_pred CCCccceeccceeEEEeCCCccceee
Q psy12056 3 PLGTTEISGENTYFEIIQPEELRYTF 28 (200)
Q Consensus 3 ~~~~~~~~~~~~~~~V~~p~~l~~~~ 28 (200)
|+|.-+|.-+.+|+++.+-..+.++|
T Consensus 2 ~~~~m~inp~f~FL~~~~~~~istt~ 27 (30)
T 3cm8_B 2 PLGSMDVNPTLLFLKVPAQNAISTTF 27 (30)
T ss_pred CccccccCccEEEEcChhhhhheecc
Confidence 78888999999999987766555554
Done!