RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy12056
         (200 letters)



>d1de4c2 c.8.4.1 (C:190-382) Transferrin receptor ectodomain, apical
           domain {Human (Homo sapiens) [TaxId: 9606]}
          Length = 193

 Score = 36.8 bits (85), Expect = 6e-04
 Identities = 22/107 (20%), Positives = 41/107 (38%), Gaps = 4/107 (3%)

Query: 8   EISGENTYFEIIQPEELRYTFKIRPAKDFGSSFNGSFSGEKIRMVPANPPWSCTHPTNAN 67
           + S +N+   + +   L Y  +         S   + +G+   +V AN            
Sbjct: 4   KDSAQNSVIIVDKNGRLVYLVENPGGY-VAYSKAATVTGK---LVHANFGTKKDFEDLYT 59

Query: 68  TIKGHIALIERGECSFVHKAMIAESIGARGVIISDNDPDSDDFYVEM 114
            + G I ++  G+ +F  K   AES+ A GV+I  +         E+
Sbjct: 60  PVNGSIVIVRAGKITFAEKVANAESLNAIGVLIYMDQTKFPIVNAEL 106


>d3bi1a2 c.8.4.1 (A:118-350) Glutamate carboxypeptidase II {Human
           (Homo sapiens) [TaxId: 9606]}
          Length = 233

 Score = 35.0 bits (80), Expect = 0.003
 Identities = 13/50 (26%), Positives = 21/50 (42%)

Query: 68  TIKGHIALIERGECSFVHKAMIAESIGARGVIISDNDPDSDDFYVEMISD 117
              G I +   G+    +K   A+  GA+GVI+  +  D     V+   D
Sbjct: 78  NCSGKIVIARYGKVFRGNKVKNAQLAGAKGVILYSDPADYFAPGVKSYPD 127


>d2ctea1 d.51.1.1 (A:8-88) Vigilin {Human (Homo sapiens) [TaxId:
           9606]}
          Length = 81

 Score = 26.6 bits (59), Expect = 0.73
 Identities = 12/47 (25%), Positives = 21/47 (44%), Gaps = 6/47 (12%)

Query: 112 VEMISDQSKREIHIP---VAFLVGKNGRVIKNALKRLNMDYALINIP 155
           V  +  Q+   + IP     F++GKNG  +++   +       I IP
Sbjct: 3   VARLQTQASATVAIPKEHHRFVIGKNGEKLQDLELKTA---TKIQIP 46


>d2o3aa1 c.116.1.8 (A:1-167) Uncharacterized protein AF0751
           {Archaeoglobus fulgidus [TaxId: 2234]}
          Length = 167

 Score = 27.3 bits (61), Expect = 0.88
 Identities = 10/37 (27%), Positives = 16/37 (43%), Gaps = 4/37 (10%)

Query: 85  HKAMIAESIGARGVIISDNDPDSDDFYVEMISDQSKR 121
           H A+ A + GA+G+     D        E + D  +R
Sbjct: 21  HVALTARAFGAKGIYFDTEDKSV----FESVRDVVER 53


>d1kica_ c.70.1.1 (A:) Inosine-adenosine-guanosine preferring
           nucleoside hydrolase {Trypanosoma vivax [TaxId: 5699]}
          Length = 327

 Score = 27.4 bits (60), Expect = 1.3
 Identities = 10/65 (15%), Positives = 28/65 (43%), Gaps = 4/65 (6%)

Query: 95  ARGVIISDNDPDSDDFYVEMISDQSKREIHIPVAFLVGKNG---RVIKNALKRLNMDYAL 151
           A+ V++ D+  + DDF   ++   +  ++ +  A     +           K + + +  
Sbjct: 2   AKNVVL-DHAGNLDDFVAMVLLASNTEKVRLIGALCTDADCFVENGFNVTGKIMCLMHNN 60

Query: 152 INIPV 156
           +N+P+
Sbjct: 61  MNLPL 65


>d1wvna1 d.51.1.1 (A:5-74) Poly(RC)-binding protein 1 {Human (Homo
           sapiens) [TaxId: 9606]}
          Length = 70

 Score = 24.4 bits (53), Expect = 3.3
 Identities = 7/26 (26%), Positives = 13/26 (50%), Gaps = 3/26 (11%)

Query: 118 QSKREIHIP---VAFLVGKNGRVIKN 140
           Q+  E+ IP   +  ++G+ G  I  
Sbjct: 1   QTTHELTIPNNLIGCIIGRQGANINE 26


>d2ctja1 d.51.1.1 (A:8-89) Vigilin {Human (Homo sapiens) [TaxId:
           9606]}
          Length = 82

 Score = 23.7 bits (51), Expect = 8.6
 Identities = 8/32 (25%), Positives = 19/32 (59%), Gaps = 3/32 (9%)

Query: 112 VEMISDQSKREIHIP---VAFLVGKNGRVIKN 140
            + +++ ++ E+ IP      L+G  GR+I++
Sbjct: 3   QKDLANIAEVEVSIPAKLHNSLIGTKGRLIRS 34


>d2joya1 b.34.5.7 (A:1-96) Ribosomal protein L14e {Sulfolobus
           solfataricus [TaxId: 2287]}
          Length = 96

 Score = 23.9 bits (52), Expect = 8.8
 Identities = 5/27 (18%), Positives = 15/27 (55%)

Query: 142 LKRLNMDYALINIPVNLTYVPIHKINQ 168
           +  ++ ++ L+  P ++T V   ++N 
Sbjct: 25  VDIIDDNFVLVTGPKDITGVKRRRVNI 51


>d1viga_ d.51.1.1 (A:) Vigilin {Human (Homo sapiens) [TaxId: 9606]}
          Length = 71

 Score = 23.2 bits (50), Expect = 9.8
 Identities = 11/44 (25%), Positives = 17/44 (38%), Gaps = 6/44 (13%)

Query: 115 ISDQSKREIHIP---VAFLVGKNGRVIKNALKRLNMDYALINIP 155
           I+     EI+I       L+GK+G  I     +       + IP
Sbjct: 1   INRMDYVEINIDHKFHRHLIGKSGANINRIKDQYK---VSVRIP 41


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.320    0.138    0.419 

Gapped
Lambda     K      H
   0.267   0.0563    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 803,375
Number of extensions: 38526
Number of successful extensions: 135
Number of sequences better than 10.0: 1
Number of HSP's gapped: 135
Number of HSP's successfully gapped: 27
Length of query: 200
Length of database: 2,407,596
Length adjustment: 81
Effective length of query: 119
Effective length of database: 1,295,466
Effective search space: 154160454
Effective search space used: 154160454
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (23.8 bits)