Query psy12057
Match_columns 172
No_of_seqs 159 out of 1286
Neff 6.2
Searched_HMMs 29240
Date Fri Aug 16 17:32:36 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy12057.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/12057hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3gir_A Aminomethyltransferase; 100.0 2.1E-30 7.3E-35 227.7 14.3 136 33-170 257-393 (393)
2 3tfi_A GCVT-like aminomethyltr 100.0 2.4E-29 8.3E-34 218.9 13.7 128 31-163 239-369 (369)
3 1yx2_A Aminomethyltransferase; 100.0 8.8E-28 3E-32 207.9 15.2 123 37-165 241-365 (365)
4 1wsr_A Aminomethyltransferase; 100.0 9.2E-28 3.1E-32 208.6 14.6 123 49-171 253-375 (375)
5 1v5v_A Aminomethyltransferase; 99.9 9.9E-27 3.4E-31 204.1 16.2 116 49-169 280-396 (401)
6 1wos_A Aminomethyltransferase; 99.9 1.4E-26 4.8E-31 200.3 16.3 114 49-169 247-362 (364)
7 1pj5_A N,N-dimethylglycine oxi 99.9 1.2E-26 4.2E-31 217.7 13.7 117 50-171 711-829 (830)
8 1vlo_A Aminomethyltransferase; 99.9 4.3E-26 1.5E-30 199.1 14.5 123 35-167 244-373 (381)
9 3ttg_A Putative aminomethyltra 99.9 7.3E-26 2.5E-30 196.0 10.6 119 37-163 231-355 (355)
10 2gag_A Heterotetrameric sarcos 99.9 1.5E-24 5.2E-29 207.5 12.9 117 50-171 837-964 (965)
11 1vly_A SPOT PR51, unknown prot 99.9 3.4E-22 1.2E-26 171.7 11.0 124 34-166 208-338 (338)
12 3l48_A Outer membrane usher pr 87.2 3.6 0.00012 28.5 7.9 61 85-158 8-69 (94)
13 2xet_A CAF1A usher, F1 capsule 59.1 12 0.00042 25.0 4.1 60 86-157 3-67 (89)
14 2hvy_B GAR1, small nucleolar R 42.7 86 0.0029 22.1 7.0 54 96-151 29-84 (104)
15 1pm3_A MTH1895; unknown functi 34.9 54 0.0018 22.3 4.3 33 100-132 28-60 (97)
16 2w5e_A Putative serine proteas 32.5 64 0.0022 23.9 4.8 33 99-136 126-158 (163)
17 3sti_A Protease DEGQ; serine p 28.5 51 0.0018 26.0 3.8 22 100-122 187-208 (245)
18 4fln_A Protease DO-like 2, chl 26.8 47 0.0016 29.8 3.6 32 100-132 200-231 (539)
19 3tjo_A Serine protease HTRA1; 25.6 76 0.0026 24.5 4.2 20 100-119 189-208 (231)
20 2ey4_C Small nucleolar RNP sim 25.5 1.5E+02 0.0052 19.7 5.3 50 96-147 29-80 (82)
21 3lgi_A Protease DEGS; stress-s 25.2 66 0.0023 24.8 3.8 19 100-118 176-194 (237)
22 3qo6_A Protease DO-like 1, chl 23.0 90 0.0031 25.7 4.4 32 99-131 179-211 (348)
23 1agj_A Epidermolytic toxin A; 22.8 1.2E+02 0.0041 23.0 4.9 33 100-132 195-227 (242)
24 2jys_A Protease/reverse transc 22.4 62 0.0021 22.8 2.7 38 125-162 40-80 (107)
25 3stj_A Protease DEGQ; serine p 22.3 94 0.0032 25.7 4.4 31 100-131 187-218 (345)
26 1xe1_A Hypothetical protein PF 21.6 1.9E+02 0.0065 20.7 5.3 24 92-118 54-78 (116)
No 1
>3gir_A Aminomethyltransferase; glycine cleavage system, aminotransferase, structural genomics; 1.60A {Bartonella henselae}
Probab=99.97 E-value=2.1e-30 Score=227.68 Aligned_cols=136 Identities=29% Similarity=0.464 Sum_probs=119.2
Q ss_pred ccccccccchhhhccCCChhccccCccccCCCCCCCCCccHHHHHHhHhcCCCEEEEEEEecC-CCCCCCCEEEcCCCcE
Q psy12057 33 AIKTSSVNTILLELFLAMDIYSRLLIFPGKRRRETGGFPGASIIQSQIKSGVSRKRTGLTSTG-VPIRPGYEIFNANDQR 111 (172)
Q Consensus 33 ~~~~s~~~~~~~~~~~dtP~EaGLg~~V~~~K~~~~dFIGkeAL~~~~~~g~~r~LVgL~l~~-~~~~~g~~V~~~dg~~ 111 (172)
|++.-.+..++.+ +.+|+|+||+|+|+++|++|+||||||+|++++..|++|+||+|.+++ .+++.|++|++.+|+.
T Consensus 257 EaG~p~~g~dl~~--~~~P~EagL~~~V~~~k~~Kg~fiGqeal~r~~~~G~~rrlvgl~~~~~~~~~~G~~v~~~~g~~ 334 (393)
T 3gir_A 257 EAGLCLHGNDITP--DTTPIDAALTWAVPKNVREKAQFYGAKAFLESLQKGPSRCRVGLKPQTRQPIRAGAVLFDNEGNR 334 (393)
T ss_dssp HTTCCCBTTTBCT--TCCTTTTTCGGGSCHHHHHHCCSTTHHHHHHHHHHCCSSEEEEEEESSSSCCCTTCEEECTTSCE
T ss_pred hcCcccchhhcCC--CCCHHHCCchheecCCCCCCCCCcCHHHHHHHHhcCCCeEEEEEEECCCcCCCCCCEEEccCCeE
Confidence 3444555555554 336999999999999732136999999999998889999999999987 7889999998448999
Q ss_pred EEEEEeeecccccCCeEEEEEecCCccCCCCEEEEEECCEEEeEEEEcCCCcCCCCCCC
Q psy12057 112 VGAITSGCPSPSLKKNIAMGYIEPAYSKVGVELWVRVRDKRVDVKVTKMPFLKSNYHTP 170 (172)
Q Consensus 112 VG~VTSg~ySP~lgk~Iala~V~~~~a~~G~~l~V~i~g~~~~A~V~~~Pf~dp~~~r~ 170 (172)
||+|||++|||+++++||||||+.+++++|++|+|+++|++++|+|++.||++++++|+
T Consensus 335 vG~VTS~~~sp~l~~~iaLa~v~~~~~~~G~~l~v~i~g~~~~a~v~~~PF~~~~~~~~ 393 (393)
T 3gir_A 335 IGVVTSGGFGPSFDGPVAMGYVPVAWKVEGTEVFTELRGKKIALSVHSLPFVEQRYFKG 393 (393)
T ss_dssp EEEEEEEEEETTTTEEEEEEEECGGGCSTTCEEEEEETTEEEEEEEECSCSSCCCCCC-
T ss_pred EEEEEEEEECCCCCcEEEEEEEcHHHcCCCCEEEEEECCEEEEEEEecCCCCCCCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999874
No 2
>3tfi_A GCVT-like aminomethyltransferase protein; demethylase, THF; 1.60A {Candidatus pelagibacter ubique} PDB: 3tfh_A 3tfj_A*
Probab=99.96 E-value=2.4e-29 Score=218.88 Aligned_cols=128 Identities=15% Similarity=0.175 Sum_probs=111.1
Q ss_pred ccccccccccchhhhccCCChhccccCccccCCCCCCCCCccHHHHHHhHhcCCCEEEEEEEecC-CCC--CCCCEEEcC
Q psy12057 31 SMAIKTSSVNTILLELFLAMDIYSRLLIFPGKRRRETGGFPGASIIQSQIKSGVSRKRTGLTSTG-VPI--RPGYEIFNA 107 (172)
Q Consensus 31 ~~~~~~s~~~~~~~~~~~dtP~EaGLg~~V~~~K~~~~dFIGkeAL~~~~~~g~~r~LVgL~l~~-~~~--~~g~~V~~~ 107 (172)
-+|++.-.+..++.+. .+|+|+||+|+|+++| ..||||||+|++++.+|++||||||.+++ .++ +.|++|+ .
T Consensus 239 RlEaG~~~~g~d~~~~--~~P~Eagl~~~V~~~K--g~~fiGqeal~r~~~~G~~rrlvgl~~~~~~~~~~~~g~~v~-~ 313 (369)
T 3tfi_A 239 RIESALLSYGNDFDNN--DNPFECGFDQYVSLDS--DINFLGKEKLKEIKLKGPQKKLRGVKIDIKEISLTGSKNIYD-E 313 (369)
T ss_dssp HHHTTCCCBTTTBCTT--CCGGGTTCGGGCCCSS--SCCCTTHHHHHHHHHHCCSEEEEEEEESSSCCCCCSCEEEEC-T
T ss_pred HHhcCCCCccccCCCC--CChHHCCchhhccCCC--CCCCcCHHHHHHHHhcCCCeEEEEEEECCCCCCCcCCCCEEE-e
Confidence 3555555555555443 3699999999999986 23899999999999889999999999987 333 5788998 4
Q ss_pred CCcEEEEEEeeecccccCCeEEEEEecCCccCCCCEEEEEECCEEEeEEEEcCCCc
Q psy12057 108 NDQRVGAITSGCPSPSLKKNIAMGYIEPAYSKVGVELWVRVRDKRVDVKVTKMPFL 163 (172)
Q Consensus 108 dg~~VG~VTSg~ySP~lgk~Iala~V~~~~a~~G~~l~V~i~g~~~~A~V~~~Pf~ 163 (172)
+|+.||+|||++|||+++++||||||+.+++++|++++|+++|++++|+|++.|||
T Consensus 314 ~g~~vG~VTS~~~sp~lg~~iala~v~~~~~~~G~~l~v~i~g~~~~a~v~~~Pf~ 369 (369)
T 3tfi_A 314 NNNVIGELRSACYSPHFQKVIGIAMIKKSHWEASQGFKIQINDNTINGNVCDLPFI 369 (369)
T ss_dssp TCCEEEEEEEEEEETTTTEEEEEEEEEGGGCSTTCEEEEEETTEEEEEEEECSSCC
T ss_pred CCeEEEEEEeeeECCCCCceEEEEEECHHHcCCCCEEEEEECCEEEEEEEECCCCC
Confidence 99999999999999999999999999999999999999999999999999999997
No 3
>1yx2_A Aminomethyltransferase; glycine cleavage system T protein, alpha-beta, beta-barrel, structural genomics, PSI, protein structure initiative; 2.08A {Bacillus subtilis}
Probab=99.95 E-value=8.8e-28 Score=207.87 Aligned_cols=123 Identities=32% Similarity=0.463 Sum_probs=108.2
Q ss_pred ccccchhhhccCCChhccccCccccCCCCCCC-CCccHHHHHHhHhcCCCEEEEEEEecC-CCCCCCCEEEcCCCcEEEE
Q psy12057 37 SSVNTILLELFLAMDIYSRLLIFPGKRRRETG-GFPGASIIQSQIKSGVSRKRTGLTSTG-VPIRPGYEIFNANDQRVGA 114 (172)
Q Consensus 37 s~~~~~~~~~~~dtP~EaGLg~~V~~~K~~~~-dFIGkeAL~~~~~~g~~r~LVgL~l~~-~~~~~g~~V~~~dg~~VG~ 114 (172)
-.+..++.+ +.+|+|+||+|.|+|+| + ||||||++++++..|++|++++|.+++ .+++.|++|+. +|+.||.
T Consensus 241 p~~g~d~~~--~~~P~e~~l~~~V~~~K---gc~yiGqe~lar~~~~g~~rrlv~l~~~~~~~~~~g~~v~~-~g~~vG~ 314 (365)
T 1yx2_A 241 PLYGQELTR--DITPIEAGIGFAVKHKK---ESDFFGKSVLSEQKENGAKRKLVGLEMIEKGIPRHGYEVFQ-NGKSVGK 314 (365)
T ss_dssp CCBTTTBST--TCCTTTTTCGGGCCTTC---SSCCTTHHHHHHHHHHCCSEEEEEEEESSSCCCCTTCEEEE-TTEEEEE
T ss_pred CcCccccCC--CCCHHHCCccceecCCC---CCCCcCHHHHHHHHhcCCCeEEEEEEECCCcCCCCCCEEEE-CCeeEEE
Confidence 333444443 23799999999999986 6 499999999999889999999999987 78899999995 8999999
Q ss_pred EEeeecccccCCeEEEEEecCCccCCCCEEEEEECCEEEeEEEEcCCCcCC
Q psy12057 115 ITSGCPSPSLKKNIAMGYIEPAYSKVGVELWVRVRDKRVDVKVTKMPFLKS 165 (172)
Q Consensus 115 VTSg~ySP~lgk~Iala~V~~~~a~~G~~l~V~i~g~~~~A~V~~~Pf~dp 165 (172)
|||++|||+++++||||||+.+++++|++++|+++|++++|+|++.|||++
T Consensus 315 vtS~~~sp~~~~~iala~v~~~~~~~g~~~~v~~~g~~~~a~v~~~Pf~~~ 365 (365)
T 1yx2_A 315 VTTGTQSPTLGKNVGLALIDSETSEIGTVVDVEIRKKLVKAKVVKTPFYKR 365 (365)
T ss_dssp EEEEEEETTTTEEEEEEEEEGGGCSTTCEEEEEETTEEEEEEEECCCC---
T ss_pred EEeccccCCCCceEEEEEEChHHcCCCCEEEEEECCEEEEEEEEcCCCCCC
Confidence 999999999999999999999998999999999999999999999999975
No 4
>1wsr_A Aminomethyltransferase; glycine-cleavage sytem; 2.00A {Homo sapiens} PDB: 1wsv_A*
Probab=99.95 E-value=9.2e-28 Score=208.61 Aligned_cols=123 Identities=46% Similarity=0.738 Sum_probs=110.3
Q ss_pred CChhccccCccccCCCCCCCCCccHHHHHHhHhcCCCEEEEEEEecCCCCCCCCEEEcCCCcEEEEEEeeecccccCCeE
Q psy12057 49 AMDIYSRLLIFPGKRRRETGGFPGASIIQSQIKSGVSRKRTGLTSTGVPIRPGYEIFNANDQRVGAITSGCPSPSLKKNI 128 (172)
Q Consensus 49 dtP~EaGLg~~V~~~K~~~~dFIGkeAL~~~~~~g~~r~LVgL~l~~~~~~~g~~V~~~dg~~VG~VTSg~ySP~lgk~I 128 (172)
.+|+|+||+|+|+|+|++|+||||||++++++..|++||+|+|..++.+++.|++|++.+|+.||.|||++|||+++++|
T Consensus 253 ~~P~Eagl~~~V~~~~~~Kg~fiGqe~lar~~~~g~~rrlv~l~~~~~~~~~g~~v~~~~g~~vG~vtS~~~sp~lg~~i 332 (375)
T 1wsr_A 253 TTPVEGSLSWTLGKRRRAAMDFPGAKVIVPQLKGRVQRRRVGLMCEGAPMRAHSPILNMEGTKIGTVTSGCPSPSLKKNV 332 (375)
T ss_dssp CCTTTTTCGGGSCHHHHHHTCSTTHHHHHHHHTTCCSCEEEEEEESSSCCCTTCEEECTTSCEEEEEEEEEEETTTTEEE
T ss_pred CChhHCCchheecCCCCCCCCCcCHHHHHHHHhcCCCEEEEEEEcCCccCCCCCEEEcCCCcEEEEEecceecCcCCceE
Confidence 36999999999999821137999999999988889999999997755778999999844799999999999999999999
Q ss_pred EEEEecCCccCCCCEEEEEECCEEEeEEEEcCCCcCCCCCCCC
Q psy12057 129 AMGYIEPAYSKVGVELWVRVRDKRVDVKVTKMPFLKSNYHTPP 171 (172)
Q Consensus 129 ala~V~~~~a~~G~~l~V~i~g~~~~A~V~~~Pf~dp~~~r~~ 171 (172)
|||||+.+++++|++++|+++++.++|+|++.||++++++|+|
T Consensus 333 ala~v~~~~~~~g~~~~v~~~g~~~~a~v~~~Pf~~~~~~~~~ 375 (375)
T 1wsr_A 333 AMGYVPCEYSRPGTMLLVEVRRKQQMAVVSKMPFVPTNYYTLK 375 (375)
T ss_dssp EEEEECGGGCSTTCEEEEEETTEEEEEEEECSCSSCCCCCCC-
T ss_pred EEEEEChHHcCCCCEEEEEECCEEEEEEEEccCCcCccccCCC
Confidence 9999999998999999999999999999999999999877753
No 5
>1v5v_A Aminomethyltransferase; glycine-cleavage sytem, structural riken structural genomics/proteomics initiative, RSGI; 1.50A {Pyrococcus horikoshii} SCOP: b.44.2.1 d.250.1.1
Probab=99.94 E-value=9.9e-27 Score=204.12 Aligned_cols=116 Identities=25% Similarity=0.402 Sum_probs=109.1
Q ss_pred CChhccccCccccCCCCCCCCCccHHHHHHhHhcCCCEEEEEEEecC-CCCCCCCEEEcCCCcEEEEEEeeecccccCCe
Q psy12057 49 AMDIYSRLLIFPGKRRRETGGFPGASIIQSQIKSGVSRKRTGLTSTG-VPIRPGYEIFNANDQRVGAITSGCPSPSLKKN 127 (172)
Q Consensus 49 dtP~EaGLg~~V~~~K~~~~dFIGkeAL~~~~~~g~~r~LVgL~l~~-~~~~~g~~V~~~dg~~VG~VTSg~ySP~lgk~ 127 (172)
.+|+|+||+|+|+|+| +|||||++++++..|+.|+||+|.+++ .+++.|++|+. +|+.||.|||++|||+++++
T Consensus 280 ~~P~E~gl~~~V~f~K----gyiGqE~lar~~~~G~~rrlv~l~~~~~~~~~~g~~v~~-~g~~vG~VtS~~~sp~~~~~ 354 (401)
T 1v5v_A 280 VTPLQANLEFAIYWDK----DFIGKDALLKQKERGVGRKLVHFKMIDKGIPREGYKVYA-NGEMIGEVTSGTLSPLLNVG 354 (401)
T ss_dssp SCTTTTTCGGGCCTTS----CCTTHHHHHHHHHHCCCEEEEEEEESSSCCCCTTCEEEE-TTEEEEEEEEEEECTTTCSE
T ss_pred CChHHCCcccccCCCC----CccCHHHHHHHHhhCCCeEEEEEEECCCCCCCCCCEEEE-CCEEEEEEEeeeEcCCCCce
Confidence 3799999999999987 599999999999889889999999987 78899999995 89999999999999999999
Q ss_pred EEEEEecCCccCCCCEEEEEECCEEEeEEEEcCCCcCCCCCC
Q psy12057 128 IAMGYIEPAYSKVGVELWVRVRDKRVDVKVTKMPFLKSNYHT 169 (172)
Q Consensus 128 Iala~V~~~~a~~G~~l~V~i~g~~~~A~V~~~Pf~dp~~~r 169 (172)
||||||+.+++++|++++|+++++.++|+|++.||+++.+++
T Consensus 355 iala~v~~~~~~~g~~l~v~~~g~~~~a~v~~~Pf~~~~~~~ 396 (401)
T 1v5v_A 355 IGIAFVKEEYAKPGIEIEVEIRGQRKKAVTVTPPFYDPKKYG 396 (401)
T ss_dssp EEEEEEEGGGCSTTCEEEEEETTEEEEEEEECSCSSCTTTSS
T ss_pred EEEEEEchHHcCCCCEEEEEECCEEEEEEEEccCCccccccC
Confidence 999999999999999999999999999999999999998765
No 6
>1wos_A Aminomethyltransferase; T-protein; 1.84A {Thermotoga maritima} SCOP: b.44.2.1 d.250.1.1 PDB: 1woo_A* 1wop_A* 1wor_A
Probab=99.94 E-value=1.4e-26 Score=200.29 Aligned_cols=114 Identities=32% Similarity=0.431 Sum_probs=106.5
Q ss_pred CChhccccCccccCCCCCCCCCccHHHHHHhHhcCCCEEEEEEEecC-CCCCCCCEEEcCCCcEEEEEEeeecccccCCe
Q psy12057 49 AMDIYSRLLIFPGKRRRETGGFPGASIIQSQIKSGVSRKRTGLTSTG-VPIRPGYEIFNANDQRVGAITSGCPSPSLKKN 127 (172)
Q Consensus 49 dtP~EaGLg~~V~~~K~~~~dFIGkeAL~~~~~~g~~r~LVgL~l~~-~~~~~g~~V~~~dg~~VG~VTSg~ySP~lgk~ 127 (172)
.+|+|+||+|.|+|+| +|||||++++++.. ++|++++|.+++ .+++.|++|+. +|+.||.|||++|||+++++
T Consensus 247 ~~P~e~~l~~~V~~~K----gyiGqe~lar~~~~-~~rrlv~l~~~~~~~~~~g~~v~~-~g~~vG~vtS~~~sp~~g~~ 320 (364)
T 1wos_A 247 TNPFEVGLSWVVKLNK----DFVGKEALLKAKEK-VERKLVALELSGKRIARKGYEVLK-NGERVGEITSGNFSPTLGKS 320 (364)
T ss_dssp SCGGGGTCGGGCCTTS----CCTTHHHHHHHHHT-CCEEEEEEEESSSCCCCTTCEEEE-TTEEEEEEEEEEEETTTTEE
T ss_pred CCHHHCCcccccCCCC----CCcCHHHHHHHHhc-cCeEEEEEEECCCcCCCCCCEEEE-CCeEEEEEEeceecCcCCce
Confidence 3699999999999987 59999999999888 999999999987 68899999995 89999999999999999999
Q ss_pred EEEEEecCCccCCCCEEEEEECC-EEEeEEEEcCCCcCCCCCC
Q psy12057 128 IAMGYIEPAYSKVGVELWVRVRD-KRVDVKVTKMPFLKSNYHT 169 (172)
Q Consensus 128 Iala~V~~~~a~~G~~l~V~i~g-~~~~A~V~~~Pf~dp~~~r 169 (172)
||||||+.+ +++|++++|++++ +.++|+|+++||+++.++|
T Consensus 321 iala~v~~~-~~~g~~l~v~~~~~~~~~a~v~~~Pf~~~~~~~ 362 (364)
T 1wos_A 321 IALALVSKS-VKIGDQLGVVFPGGKLVEALVVKKPFYRGSVRR 362 (364)
T ss_dssp EEEEEEETT-CCTTCEEEEEETTTEEEEEEEECSCSCCCSCC-
T ss_pred EEEEEEccc-cCCCCEEEEEeCCCEEEEEEEEccCCCCccccc
Confidence 999999999 8999999999999 9999999999999998765
No 7
>1pj5_A N,N-dimethylglycine oxidase; channelling, FAD binding, folate binding, amine oxidase, oxidoreductase; HET: FAD; 1.61A {Arthrobacter globiformis} SCOP: b.44.2.1 c.3.1.2 d.16.1.5 d.250.1.1 PDB: 1pj6_A* 1pj7_A* 3gsi_A*
Probab=99.94 E-value=1.2e-26 Score=217.67 Aligned_cols=117 Identities=19% Similarity=0.215 Sum_probs=110.2
Q ss_pred ChhccccCccccCCCCCCCCCccHHHHHHhHhcCCCEEEEEEEecC--CCCCCCCEEEcCCCcEEEEEEeeecccccCCe
Q psy12057 50 MDIYSRLLIFPGKRRRETGGFPGASIIQSQIKSGVSRKRTGLTSTG--VPIRPGYEIFNANDQRVGAITSGCPSPSLKKN 127 (172)
Q Consensus 50 tP~EaGLg~~V~~~K~~~~dFIGkeAL~~~~~~g~~r~LVgL~l~~--~~~~~g~~V~~~dg~~VG~VTSg~ySP~lgk~ 127 (172)
+|+|+||+|+|+|+| +||||||++++++..|++||||+|.+++ .++++|++|+. +|+.||+|||++|||+++++
T Consensus 711 ~P~e~~l~~~v~~~k---g~f~G~e~~~r~~~~g~~rrlv~l~~~~~~~~~~~g~~v~~-~g~~vG~vts~~~sp~~~~~ 786 (830)
T 1pj5_A 711 DPFEAGLGFAVKMAK---ESFIGKGALEGRTEEASARRLRCLTIDDGRSIVLGKEPVFY-KEQAVGYVTSAAYGYTVAKP 786 (830)
T ss_dssp CTTTTTCGGGCCTTS---SCCTTHHHHTTCCSTTCSEEEEEEEETTSCCCCCSCCEEEE-TTEEEEECCSEEEETTTTEE
T ss_pred CHHHCCCcCeeeCCC---CCCCCHHHHHHHHhcCCCeEEEEEEEeCCCCCCCCCCEEee-CCeEEEEEecceeccccCce
Confidence 699999999999986 6999999999998889999999999986 56789999985 89999999999999999999
Q ss_pred EEEEEecCCccCCCCEEEEEECCEEEeEEEEcCCCcCCCCCCCC
Q psy12057 128 IAMGYIEPAYSKVGVELWVRVRDKRVDVKVTKMPFLKSNYHTPP 171 (172)
Q Consensus 128 Iala~V~~~~a~~G~~l~V~i~g~~~~A~V~~~Pf~dp~~~r~~ 171 (172)
||||||+.++++ |++++|+++++.++|+|+++|||+|.+.|+.
T Consensus 787 iala~v~~~~~~-g~~~~v~~~~~~~~a~v~~~pf~~~~~~r~~ 829 (830)
T 1pj5_A 787 IAYSYLPGTVSV-GDSVDIEYFGRRITATVTEDPLYDPKMTRLR 829 (830)
T ss_dssp EEEEEEETTCCT-TCEEEEEETTEEEEEEEECSCSSCTTCTTTC
T ss_pred EEEEEechhhcC-CCEEEEEECCEEEEEEEEcCCCcCCcccccC
Confidence 999999999988 9999999999999999999999999998874
No 8
>1vlo_A Aminomethyltransferase; NP417381, tetrahydrofolat dependent) of glycine cleavage system, structural genomics, protein structure initiative; HET: MSE; 1.70A {Escherichia coli K12} SCOP: b.44.2.1 d.250.1.1 PDB: 3a8j_A* 3a8i_A* 3a8k_A*
Probab=99.94 E-value=4.3e-26 Score=199.11 Aligned_cols=123 Identities=24% Similarity=0.270 Sum_probs=108.2
Q ss_pred ccccccchhhhccCCChhccccCccccCCCCCCC--CCccHHHHHHhHhcCCCEEEEEEEecC-CCCCCCCEEEcCC---
Q psy12057 35 KTSSVNTILLELFLAMDIYSRLLIFPGKRRRETG--GFPGASIIQSQIKSGVSRKRTGLTSTG-VPIRPGYEIFNAN--- 108 (172)
Q Consensus 35 ~~s~~~~~~~~~~~dtP~EaGLg~~V~~~K~~~~--dFIGkeAL~~~~~~g~~r~LVgL~l~~-~~~~~g~~V~~~d--- 108 (172)
+.-.+..++.+ +.+|+|+||+|.|+|+| + ||||||++++++..|+. |+|+|.+++ .+++.|++|+. +
T Consensus 244 G~p~~g~d~~~--~~~P~EagL~~~V~~~K---g~~cfiGqE~lar~~~~G~~-rlv~l~~~~~~~~~~g~~v~~-~~~~ 316 (381)
T 1vlo_A 244 GMNLYGQEMDE--TISPLAANMGWTIAWEP---ADRDFIGREALEVQREHGTE-KLVGLVMTEKGVLRNELPVRF-TDAQ 316 (381)
T ss_dssp TCCCBTTTBCT--TSCGGGTTCGGGCCCCS---TTCCCTTHHHHHHHHHHCCC-EEEEEEECSSSCCCTTCEEEE-ECTT
T ss_pred CCCcccccCCC--CCChhhCCccceeECCC---CCCCCcCHHHHHHHHhcCCC-EEEEEEECCCcCCCCCCEEEE-CCCC
Confidence 33344444443 23699999999999987 5 99999999999988988 999999988 78899999995 5
Q ss_pred Cc-EEEEEEeeecccccCCeEEEEEecCCccCCCCEEEEEECCEEEeEEEEcCCCcCCCC
Q psy12057 109 DQ-RVGAITSGCPSPSLKKNIAMGYIEPAYSKVGVELWVRVRDKRVDVKVTKMPFLKSNY 167 (172)
Q Consensus 109 g~-~VG~VTSg~ySP~lgk~Iala~V~~~~a~~G~~l~V~i~g~~~~A~V~~~Pf~dp~~ 167 (172)
|+ .||.|||++|||+++++||||||+.+ +|++++|+++++.++|+|++.|||+|.+
T Consensus 317 g~~~vG~VtS~~~sp~lg~~iala~v~~~---~g~~l~v~~~g~~~~a~v~~~Pf~~~~~ 373 (381)
T 1vlo_A 317 GNQHEGIITSGTFSPTLGYSIALARVPEG---IGETAIVQIRNREMPVKVTKPVFVRNGK 373 (381)
T ss_dssp CCEEEEEEEEEEEETTTTEEEEEEEECTT---CCSEEEEEETTEEEEEEEECSCCEETTE
T ss_pred CCeeEEEEEEeeeCCCCCceEEEEEEEcC---CCCEEEEEECCEEEEEEEecCCCCCCCc
Confidence 88 99999999999999999999999987 7999999999999999999999999854
No 9
>3ttg_A Putative aminomethyltransferase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.00A {Leptospirillum rubarum}
Probab=99.93 E-value=7.3e-26 Score=196.05 Aligned_cols=119 Identities=20% Similarity=0.292 Sum_probs=102.9
Q ss_pred ccccchhhhccCCChhccccC-ccccCCCCCCCCCccHHHHHHhHhcC-CCEEEEEEEecC-CCCCCCCEEEc---CCCc
Q psy12057 37 SSVNTILLELFLAMDIYSRLL-IFPGKRRRETGGFPGASIIQSQIKSG-VSRKRTGLTSTG-VPIRPGYEIFN---ANDQ 110 (172)
Q Consensus 37 s~~~~~~~~~~~dtP~EaGLg-~~V~~~K~~~~dFIGkeAL~~~~~~g-~~r~LVgL~l~~-~~~~~g~~V~~---~dg~ 110 (172)
-.+..++.+ +.+|+|+||+ |.|+|+| +||||||++++++..| ++|+||+|.+++ .+++.|++|+. .+|+
T Consensus 231 p~~g~d~~~--~~~P~Eagl~~~~V~f~K---gcfiGqE~lar~~~~G~~~rrlv~l~~~~~~~~~~g~~v~~~~~~~g~ 305 (355)
T 3ttg_A 231 PLFPSELND--SFFPAEAGLDSVGVSYNK---GCYVGQEPVTRLKFQGHLNRSLAGFRLEGGPFPKMEFPVTLFNPKDGN 305 (355)
T ss_dssp CCTTTTSST--TCCTTTTTCHHHHCCSSS---CCCTTHHHHHHHHHTSCCCEEEEEEEECC---CCSCSSEEEECTTTCC
T ss_pred cccccccCC--CCCHHHcCCCCCeEECCC---CCccCHHHHHHHHhcCCCceEEEEEEECCCCCCCCCCEEEeccCCCCc
Confidence 334444433 2369999999 9999986 7999999999999888 899999999988 68899999983 2789
Q ss_pred EEEEEEeeecccccCCeEEEEEecCCccCCCCEEEEEECCEEEeEEEEcCCCc
Q psy12057 111 RVGAITSGCPSPSLKKNIAMGYIEPAYSKVGVELWVRVRDKRVDVKVTKMPFL 163 (172)
Q Consensus 111 ~VG~VTSg~ySP~lgk~Iala~V~~~~a~~G~~l~V~i~g~~~~A~V~~~Pf~ 163 (172)
.||.|||++|||+++++||||||+.+++++|++|+| ++.++|+|+++|||
T Consensus 306 ~vG~VtS~~~sp~lg~~iaLa~v~~~~~~~g~~l~v---g~~~~a~v~~~Pf~ 355 (355)
T 3ttg_A 306 EAGILTRTSSSDILGSGIGLGYIKRNFSENGTELLL---PDAQLVRVHSLPFV 355 (355)
T ss_dssp EEEEEEEEEEETTTTEEEEEEEEEGGGCSTTCEEEC---TTCCEEEEECSCCC
T ss_pred eEEEEEEeeECCCCCCEEEEEEEehhhcCCCCEEEe---CCeeeEEEeCCCCC
Confidence 999999999999999999999999999999999887 67789999999997
No 10
>2gag_A Heterotetrameric sarcosine oxidase alpha-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_A* 1x31_A* 1vrq_A* 3ad7_A* 3ad8_A* 3ad9_A* 3ada_A*
Probab=99.91 E-value=1.5e-24 Score=207.49 Aligned_cols=117 Identities=17% Similarity=0.208 Sum_probs=107.7
Q ss_pred ChhccccCccccCCCCCCCCCccHHHHHHhHhcC-CCEEEEEEEecC--CCCCCCCEEEcCCCc--------EEEEEEee
Q psy12057 50 MDIYSRLLIFPGKRRRETGGFPGASIIQSQIKSG-VSRKRTGLTSTG--VPIRPGYEIFNANDQ--------RVGAITSG 118 (172)
Q Consensus 50 tP~EaGLg~~V~~~K~~~~dFIGkeAL~~~~~~g-~~r~LVgL~l~~--~~~~~g~~V~~~dg~--------~VG~VTSg 118 (172)
+|+|+||+|+|+|+| ||||||++++++..| ++|+||+|.+++ .+++.|++|+. +|+ .||+|||+
T Consensus 837 ~P~e~gl~~~V~~~K----~fiGqe~l~r~~~~g~~rrrlv~l~~~~~~~~~~~g~~i~~-~g~~~~~~~~~~vG~vtS~ 911 (965)
T 2gag_A 837 TPQDAGMEWVVSKLK----DFIGNRSYSRADNAREDRKQLVSVLPVDKSLRLPEGAALVA-SDALASEGITPMEGWVTSS 911 (965)
T ss_dssp CTTTTTCGGGSCSSS----CCTTGGGGGSHHHHCSSCEEEEEEEESSTTCCCCTTCEEEE-TTCCCBTTBCCCCEEEEEE
T ss_pred CHHHCCchhhcCCCC----CcCCHHHHHHHHhcCCCceEEEEEEEeCCCCCCCCCCEEEE-CCccccccCCcceEEEEee
Confidence 699999999999987 799999999988766 477899999986 57899999995 664 89999999
Q ss_pred ecccccCCeEEEEEecCCccCCCCEEEEEECCEEEeEEEEcCCCcCCCCCCCC
Q psy12057 119 CPSPSLKKNIAMGYIEPAYSKVGVELWVRVRDKRVDVKVTKMPFLKSNYHTPP 171 (172)
Q Consensus 119 ~ySP~lgk~Iala~V~~~~a~~G~~l~V~i~g~~~~A~V~~~Pf~dp~~~r~~ 171 (172)
+|||+++++||||||+.+++++|++++|+++++.++|+|++.|||||++.|..
T Consensus 912 ~~sp~lg~~iala~v~~~~~~~g~~~~v~~~~~~~~a~v~~~pf~~~~~~r~~ 964 (965)
T 2gag_A 912 YDSPNLGRTFGLALIKNGRNRIGEVLKTPVGDQLVDVVVSETVLYDPEGSRRD 964 (965)
T ss_dssp EEETTTTEEEEEEEEETGGGCTTCEEEEEETTEEEEEEEECSCCSSTTCTTTT
T ss_pred eEcCCCCceEEEEEEChhhcCCCCEEEEEECCEEEEEEEEccCCcCCCCcccC
Confidence 99999999999999999999999999999999999999999999999999864
No 11
>1vly_A SPOT PR51, unknown protein from 2D-PAGE; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: MSE; 1.30A {Escherichia coli} SCOP: b.44.2.1 d.250.1.1 PDB: 1nrk_A
Probab=99.87 E-value=3.4e-22 Score=171.75 Aligned_cols=124 Identities=10% Similarity=0.074 Sum_probs=102.3
Q ss_pred cccccccchhhhccCCChhccccC--ccccCCCCCCCCCccHHHHHHhHhcC-CCEEEEEEEecC-CCCCCCCEEEc-CC
Q psy12057 34 IKTSSVNTILLELFLAMDIYSRLL--IFPGKRRRETGGFPGASIIQSQIKSG-VSRKRTGLTSTG-VPIRPGYEIFN-AN 108 (172)
Q Consensus 34 ~~~s~~~~~~~~~~~dtP~EaGLg--~~V~~~K~~~~dFIGkeAL~~~~~~g-~~r~LVgL~l~~-~~~~~g~~V~~-~d 108 (172)
++.-.+..++.+ +.+|+|+||+ |.|+|+| +||||||+++|++..| ++|+++.+..++ .+++.|++|+. .+
T Consensus 208 aG~p~~g~d~~~--~~~P~Eagl~~l~~V~f~K---gcyiGqE~lar~~~~G~~rr~l~~l~~~~~~~~~~g~~v~~~~~ 282 (338)
T 1vly_A 208 AGFPVIDAANSG--QFIPQATNLQALGGISFKK---GCYTGQEMVARAKFRGANKRALWLLAGSASRLPEAGEDLELKMG 282 (338)
T ss_dssp HTCCCCCGGGTT--SCCGGGGTGGGTTCCCSSS---CCCTTHHHHHHTTSTTSCCEEEEEEEECCSSCCCTTCCEEEEET
T ss_pred cCCccccccccC--CcChhhcCccccCCCcCCC---cccCCHHHHHHHHhcCCCceEEEEEecCCCCCCCCCCEeEeccC
Confidence 333444444443 2369999999 9999987 6899999999998877 478888888765 67899999973 23
Q ss_pred --CcEEEEEEeeecccccCCeEEEEEecCCccCCCCEEEEEECCEEEeEEEEcCCCcCCC
Q psy12057 109 --DQRVGAITSGCPSPSLKKNIAMGYIEPAYSKVGVELWVRVRDKRVDVKVTKMPFLKSN 166 (172)
Q Consensus 109 --g~~VG~VTSg~ySP~lgk~Iala~V~~~~a~~G~~l~V~i~g~~~~A~V~~~Pf~dp~ 166 (172)
|+.||.|||++||| ++++||||||+.++ .+|++++| +++.++|+|+++||+.++
T Consensus 283 ~~g~~vG~VtS~~~~~-~g~~iala~v~~~~-~~g~~l~v--~g~~~~a~v~~~Pf~~~~ 338 (338)
T 1vly_A 283 ENWRRTGTVLAAVKLE-DGQVVVQVVMNNDM-EPDSIFRV--RDDANTLHIEPLPYSLEE 338 (338)
T ss_dssp TEEEEECEEEEEEECT-TSCEEEEEEEETTC-CTTCCEES--TTCSSCEEEECCSSCCC-
T ss_pred CCCccceEEEEEEECC-CCCEEEEEEEeccc-CCCCeEEE--CCCCceeEEeCCCCCCCC
Confidence 48999999999999 99999999999988 78999888 888899999999998763
No 12
>3l48_A Outer membrane usher protein PAPC; IG fold, greek KEY, cell outer membrane, fimbrium, transmembrane, transport, transport protein; 2.10A {Escherichia coli} PDB: 2kt6_A
Probab=87.22 E-value=3.6 Score=28.51 Aligned_cols=61 Identities=15% Similarity=0.200 Sum_probs=42.9
Q ss_pred CEEEEEEEecC-CCCCCCCEEEcCCCcEEEEEEeeecccccCCeEEEEEecCCccCCCCEEEEEECCEEEeEEEE
Q psy12057 85 SRKRTGLTSTG-VPIRPGYEIFNANDQRVGAITSGCPSPSLKKNIAMGYIEPAYSKVGVELWVRVRDKRVDVKVT 158 (172)
Q Consensus 85 ~r~LVgL~l~~-~~~~~g~~V~~~dg~~VG~VTSg~ySP~lgk~Iala~V~~~~a~~G~~l~V~i~g~~~~A~V~ 158 (172)
++.++.+...+ .+++-|+.|.+.+|+.+|.|--+ |++|+... .+...|.|.+.+. -.+++.
T Consensus 8 ~~~ll~l~~~dG~plPfGA~V~d~~g~~~giVG~~----------G~vyl~gl--~~~g~L~V~Wg~~-~~C~i~ 69 (94)
T 3l48_A 8 KRLFAILRLADGSQPPFGASVTSEKGRELGMVADE----------GLAWLSGV--TPGETLSVNWDGK-IQCQVN 69 (94)
T ss_dssp CCEEEEEEETTSCCCCTTCEEECTTCCEEEEBCGG----------GEEEESSC--CTTCEEEEECSSS-EEEEEE
T ss_pred EEEEEEEECCCCCcCCCccEEEcCCCceEEEECCC----------CEEEEECC--CCCCEEEEEECCC-CeEEEE
Confidence 44566666654 67788999987678889988877 58999854 3456799998763 234444
No 13
>2xet_A CAF1A usher, F1 capsule-anchoring protein; transport protein; 1.60A {Yersinia pestis}
Probab=59.10 E-value=12 Score=25.05 Aligned_cols=60 Identities=13% Similarity=0.188 Sum_probs=40.0
Q ss_pred EEEEEEEecC-CCCCCCCEE-EcCCCcEEEEEEeeecccccCCeEEEEEecCCccCCCCEEEEEEC---CEEEeEEE
Q psy12057 86 RKRTGLTSTG-VPIRPGYEI-FNANDQRVGAITSGCPSPSLKKNIAMGYIEPAYSKVGVELWVRVR---DKRVDVKV 157 (172)
Q Consensus 86 r~LVgL~l~~-~~~~~g~~V-~~~dg~~VG~VTSg~ySP~lgk~Iala~V~~~~a~~G~~l~V~i~---g~~~~A~V 157 (172)
+.++.+...+ .+++-|+.| .+.+|+.+|.|--+ |++||.-- .+..+|.|.+. +..+.+..
T Consensus 3 ~~l~~l~~~dG~~lPfGa~V~~~~~g~~~giVg~~----------G~vyl~g~--~~~~~L~V~wg~~~~~~C~~~y 67 (89)
T 2xet_A 3 RLFLHLKRSDNKPVPFGSIVTIEGQSSSSGIVGDN----------SGVYLTGL--PKKSKILVKWGRDKNQSCSSNV 67 (89)
T ss_dssp EEEEEEEETTSCBCCTTCEEEETTCCSCCEECCTT----------SEEEEEEE--CSEEEEEEESCSSTTSEEEEEE
T ss_pred EEEEEEEcCCCCcCCCccEEEECCCCCEEEEEcCC----------CEEEEECC--CCCCEEEEEECCCCCCcEEEEE
Confidence 3455565544 677899999 86567778888776 47888743 34567889885 24555553
No 14
>2hvy_B GAR1, small nucleolar RNP similar to GAR1; H/ACA RNA, RNP, pseudouridine synthase, guide RNA, isomerase biosynthetic protein-RNA complex; HET: ATP; 2.30A {Pyrococcus furiosus} SCOP: b.43.3.5 PDB: 3hay_B*
Probab=42.73 E-value=86 Score=22.07 Aligned_cols=54 Identities=19% Similarity=0.135 Sum_probs=38.1
Q ss_pred CCCCCCCEEEcCCCcEEEEEEeeecccccCCeEEEEEecCCccC--CCCEEEEEECCE
Q psy12057 96 VPIRPGYEIFNANDQRVGAITSGCPSPSLKKNIAMGYIEPAYSK--VGVELWVRVRDK 151 (172)
Q Consensus 96 ~~~~~g~~V~~~dg~~VG~VTSg~ySP~lgk~Iala~V~~~~a~--~G~~l~V~i~g~ 151 (172)
..|.-|++|++.+.+.||.|--- |+|.-.-.+..=..+.. .+ .|+.|.|....+
T Consensus 29 ~vP~~na~Vy~enk~~IGKV~DI-fGPV~~pY~sVKp~~~s-~~~~~G~klYI~~~~r 84 (104)
T 2hvy_B 29 WVPSLNDRVVDKRLQFVGIVKDV-FGPVKMPYVAIKPKVSN-PEIYVGEVLYVDERKR 84 (104)
T ss_dssp SCCCTTCEEECTTCCEEEEEEEE-EEESSSCEEEEEECSSC-GGGGTTCEEEECC---
T ss_pred CCCCCCCEeEcCCCCEeEEEEEE-ECCCCCcEEEEEecCCC-ccccCCCEEEEcCccc
Confidence 57889999998788999999875 78866666655555432 23 899999975443
No 15
>1pm3_A MTH1895; unknown function, structural genomics, PSI, protein structure initiative; 3.15A {Methanothermobacterthermautotrophicus} SCOP: b.41.1.2
Probab=34.87 E-value=54 Score=22.35 Aligned_cols=33 Identities=9% Similarity=0.122 Sum_probs=26.6
Q ss_pred CCCEEEcCCCcEEEEEEeeecccccCCeEEEEE
Q psy12057 100 PGYEIFNANDQRVGAITSGCPSPSLKKNIAMGY 132 (172)
Q Consensus 100 ~g~~V~~~dg~~VG~VTSg~ySP~lgk~Iala~ 132 (172)
.|.+|++.+|+.+|.|.--.+.+..++-.++..
T Consensus 28 ~Gk~Vin~dG~~LG~V~Dv~iD~~~G~I~~lvl 60 (97)
T 1pm3_A 28 VGKEVLDSSAKVIGKVKDVEVDIESQAIESLVL 60 (97)
T ss_dssp SSCEEECTTSCEEEEEEEEEEETTTTEEEEEEE
T ss_pred CCCEeECCCCCEEeEEEEEEEECCCCEEEEEEE
Confidence 467898878999999999999988777555543
No 16
>2w5e_A Putative serine protease; coiled coil, transmembrane, thiol protease, RNA replication, ribosomal frameshifting, catalytic triad, membrane; 2.00A {Human astrovirus 1}
Probab=32.53 E-value=64 Score=23.93 Aligned_cols=33 Identities=9% Similarity=0.062 Sum_probs=23.2
Q ss_pred CCCCEEEcCCCcEEEEEEeeecccccCCeEEEEEecCC
Q psy12057 99 RPGYEIFNANDQRVGAITSGCPSPSLKKNIAMGYIEPA 136 (172)
Q Consensus 99 ~~g~~V~~~dg~~VG~VTSg~ySP~lgk~Iala~V~~~ 136 (172)
..|-|+++.+|+.||..++. .+..-|.|++++.
T Consensus 126 nSGGPl~n~~G~VVGI~~~~-----~g~~gg~ai~~~~ 158 (163)
T 2w5e_A 126 MSGAPVCDKYCRVLAVHQTN-----TGYTGGAVIIDPT 158 (163)
T ss_dssp CTTCEEECTTSCEEEEEEEE-----ETTEEEEEECCGG
T ss_pred CchhhEEcCCCEEEEEEccC-----cccccCEEEeccc
Confidence 35679998789999999864 2222277777764
No 17
>3sti_A Protease DEGQ; serine protease, PDZ domain, chaperone, hydrolase; 2.60A {Escherichia coli}
Probab=28.51 E-value=51 Score=26.01 Aligned_cols=22 Identities=27% Similarity=0.386 Sum_probs=15.7
Q ss_pred CCCEEEcCCCcEEEEEEeeeccc
Q psy12057 100 PGYEIFNANDQRVGAITSGCPSP 122 (172)
Q Consensus 100 ~g~~V~~~dg~~VG~VTSg~ySP 122 (172)
.|-++++.+|+.||.+|.. +++
T Consensus 187 SGGPLvn~~G~vVGI~s~~-~~~ 208 (245)
T 3sti_A 187 SGGALLNLNGELIGINTAI-LAP 208 (245)
T ss_dssp TTSEEECTTSCEEEEEECC-C--
T ss_pred chhHeecCCCeEEEEEEeE-ECC
Confidence 4579997789999987764 444
No 18
>4fln_A Protease DO-like 2, chloroplastic; protease, DEG, PDZ, hydrolase; 2.80A {Arabidopsis thaliana}
Probab=26.80 E-value=47 Score=29.80 Aligned_cols=32 Identities=19% Similarity=0.170 Sum_probs=19.1
Q ss_pred CCCEEEcCCCcEEEEEEeeecccccCCeEEEEE
Q psy12057 100 PGYEIFNANDQRVGAITSGCPSPSLKKNIAMGY 132 (172)
Q Consensus 100 ~g~~V~~~dg~~VG~VTSg~ySP~lgk~Iala~ 132 (172)
.|-|+++.+|+.||..|.. ++..-..+||+|.
T Consensus 200 SGGPLvn~~GeVIGIntai-~~~~~~~gigfAI 231 (539)
T 4fln_A 200 SGGPAFNDQGECIGVAFQV-YRSEETENIGYVI 231 (539)
T ss_dssp TTSEEECSSSCEEEEECCC-C-----CCCEEEE
T ss_pred ccchhccCCCcEEEEEEEE-ecCCCCCcceecc
Confidence 4569998889999987654 3443344555553
No 19
>3tjo_A Serine protease HTRA1; peptidase, hydrolase; HET: BOG; 2.30A {Homo sapiens} PDB: 3tjn_A 3nwu_A
Probab=25.56 E-value=76 Score=24.46 Aligned_cols=20 Identities=20% Similarity=0.257 Sum_probs=15.9
Q ss_pred CCCEEEcCCCcEEEEEEeee
Q psy12057 100 PGYEIFNANDQRVGAITSGC 119 (172)
Q Consensus 100 ~g~~V~~~dg~~VG~VTSg~ 119 (172)
.|-|+++.+|+.||.++.+.
T Consensus 189 SGGPLv~~~G~vVGI~s~~~ 208 (231)
T 3tjo_A 189 AGGPLVNLDGEVIGINTLKV 208 (231)
T ss_dssp TTSEEECTTSCEEEEEEEEE
T ss_pred chhHeecCCCeEEEEEeEEe
Confidence 45699976899999988753
No 20
>2ey4_C Small nucleolar RNP similar to GAR1; trimeric complex, structural genomics, PSI, protein structur initiative; 2.11A {Pyrococcus furiosus} SCOP: b.43.3.5 PDB: 3mqk_C 2rfk_C
Probab=25.52 E-value=1.5e+02 Score=19.71 Aligned_cols=50 Identities=18% Similarity=0.098 Sum_probs=33.0
Q ss_pred CCCCCCCEEEcCCCcEEEEEEeeecccccCCeEEEEEecCCccC--CCCEEEEE
Q psy12057 96 VPIRPGYEIFNANDQRVGAITSGCPSPSLKKNIAMGYIEPAYSK--VGVELWVR 147 (172)
Q Consensus 96 ~~~~~g~~V~~~dg~~VG~VTSg~ySP~lgk~Iala~V~~~~a~--~G~~l~V~ 147 (172)
..|.-|++|++++.+.||.|--- |+|.-+-.+..=..+. .+. .|+++.|.
T Consensus 29 ~~P~~na~Vy~e~~~~IGkV~dI-fGPv~~pY~sVk~~~~-~~~s~~g~klYi~ 80 (82)
T 2ey4_C 29 WVPSLNDRVVDKRLQFVGIVKDV-FGPVKMPYVAIKPKVS-NPEIYVGEVLYVD 80 (82)
T ss_dssp SCCCTTCEEECTTCCCCEEEEEE-EEESSSCEEEEEECSS-SCSTTBTCCCEEC
T ss_pred CCCCCCCEeEcCCCCEeEEEEEE-ECCCCCcEEEEEeCCC-ChhhcCCCeEEec
Confidence 57889999998788899998765 6775555544443332 122 67766653
No 21
>3lgi_A Protease DEGS; stress-sensor, HTRA, PDZ OMP, hydrolase, serine PR; 1.65A {Escherichia coli} PDB: 2qf3_A 2qf0_A 2rce_A* 3lh3_A* 3b8j_A 2qgr_A 3lh1_A 3lgy_A 3lgu_A 3lgv_A 3lgw_A 3lgt_A 2r3u_A
Probab=25.22 E-value=66 Score=24.79 Aligned_cols=19 Identities=21% Similarity=0.226 Sum_probs=15.1
Q ss_pred CCCEEEcCCCcEEEEEEee
Q psy12057 100 PGYEIFNANDQRVGAITSG 118 (172)
Q Consensus 100 ~g~~V~~~dg~~VG~VTSg 118 (172)
.|-|+++.+|+.||.++..
T Consensus 176 SGGPlv~~~G~vvGI~s~~ 194 (237)
T 3lgi_A 176 SGGALVNSLGELMGINTLS 194 (237)
T ss_dssp TTCEEECTTCCEEEEECCC
T ss_pred chHHeeCCCCeEEEEEeee
Confidence 4579997689999988764
No 22
>3qo6_A Protease DO-like 1, chloroplastic; protease, HTRA, PH-sensor, hydrolase, photosynthesis; 2.50A {Arabidopsis thaliana}
Probab=23.02 E-value=90 Score=25.65 Aligned_cols=32 Identities=19% Similarity=0.268 Sum_probs=20.3
Q ss_pred CCCCEEEcCCCcEEEEEEeeeccccc-CCeEEEE
Q psy12057 99 RPGYEIFNANDQRVGAITSGCPSPSL-KKNIAMG 131 (172)
Q Consensus 99 ~~g~~V~~~dg~~VG~VTSg~ySP~l-gk~Iala 131 (172)
..|-|+++.+|+.||.++.. +++.- ...+++|
T Consensus 179 ~SGGPLvn~~G~vvGI~s~~-~~~~~~~~g~gfa 211 (348)
T 3qo6_A 179 NSGGPLLDSSGTLIGINTAI-YSPSGASSGVGFS 211 (348)
T ss_dssp CTTCEEECTTSCEEEEEEEE-ECSSSSCSSCEEE
T ss_pred CcHHHhhCCCCeEEEEEEee-ecCCCCcccEEEE
Confidence 35679997689999988765 44322 2344444
No 23
>1agj_A Epidermolytic toxin A; hydrolase, serine protease; 1.70A {Staphylococcus aureus} SCOP: b.47.1.1 PDB: 1dua_A 1exf_A 1due_A
Probab=22.77 E-value=1.2e+02 Score=23.04 Aligned_cols=33 Identities=30% Similarity=0.414 Sum_probs=20.0
Q ss_pred CCCEEEcCCCcEEEEEEeeecccccCCeEEEEE
Q psy12057 100 PGYEIFNANDQRVGAITSGCPSPSLKKNIAMGY 132 (172)
Q Consensus 100 ~g~~V~~~dg~~VG~VTSg~ySP~lgk~Iala~ 132 (172)
.|-|+++.+|+.||.++.+.-...-+..+++|+
T Consensus 195 SGGPl~~~~g~lvGI~s~g~~c~~~~~~~~~~~ 227 (242)
T 1agj_A 195 SGSGIFNSNGELVGIHSSKVSHLDREHQINYGV 227 (242)
T ss_dssp TTCEEECTTSEEEEEEEEEEECSSTTCEEEEEE
T ss_pred CchHhcccCCEEEEEEeccccccCcCCCceeeE
Confidence 456898657899999887632111223455544
No 24
>2jys_A Protease/reverse transcriptase; retroviral protease, hydrolase; NMR {Simian foamy virus type 1}
Probab=22.40 E-value=62 Score=22.83 Aligned_cols=38 Identities=18% Similarity=0.345 Sum_probs=26.1
Q ss_pred CCeEEEEEecCCccCCCCE---EEEEECCEEEeEEEEcCCC
Q psy12057 125 KKNIAMGYIEPAYSKVGVE---LWVRVRDKRVDVKVTKMPF 162 (172)
Q Consensus 125 gk~Iala~V~~~~a~~G~~---l~V~i~g~~~~A~V~~~Pf 162 (172)
..+|+-..|..-+.+.-+. +...+.|+.+.|+|...||
T Consensus 40 E~PI~~~~I~TIHG~k~q~vYYl~fKv~GRKveaEVi~sp~ 80 (107)
T 2jys_A 40 ERPIQTMLIKTIHGEKQQDVYYLTFKVQGRKVEAEVLASPY 80 (107)
T ss_dssp CCCSEEEEEECSSCEEEEEEEEEEEEESSCEEEEEEEEESS
T ss_pred cccccceEEEEecCceeceEEEEEEEEcCeEEEEEEecCcc
Confidence 4577777777643221122 3567899999999999987
No 25
>3stj_A Protease DEGQ; serine protease, PDZ domain, protease, chaperone, DEGP, DEGQ hydrolase; 2.60A {Escherichia coli}
Probab=22.27 E-value=94 Score=25.70 Aligned_cols=31 Identities=23% Similarity=0.290 Sum_probs=19.9
Q ss_pred CCCEEEcCCCcEEEEEEeeeccccc-CCeEEEE
Q psy12057 100 PGYEIFNANDQRVGAITSGCPSPSL-KKNIAMG 131 (172)
Q Consensus 100 ~g~~V~~~dg~~VG~VTSg~ySP~l-gk~Iala 131 (172)
.|-++++.+|+.||.+|.. +++.- ...+++|
T Consensus 187 SGGPLvn~~G~vVGI~s~~-~~~~~~~~g~gfa 218 (345)
T 3stj_A 187 SGGALLNLNGELIGINTAI-LAPGGGSVGIGFA 218 (345)
T ss_dssp TTCEEECTTSCEEEEEEEE-ECTTSSCSSCEEE
T ss_pred CccceeCCCCEEEEEEecc-ccCCCCcceeEEE
Confidence 4569997789999987754 44431 2234544
No 26
>1xe1_A Hypothetical protein PF0907; structural genomics, unknown function, protein structure INI secsg, conserved hypothetical protein; HET: MSE; 2.00A {Pyrococcus furiosus} SCOP: b.43.3.1
Probab=21.58 E-value=1.9e+02 Score=20.68 Aligned_cols=24 Identities=21% Similarity=0.314 Sum_probs=13.7
Q ss_pred EecCCCCCCCCEEEcCCCc-EEEEEEee
Q psy12057 92 TSTGVPIRPGYEIFNANDQ-RVGAITSG 118 (172)
Q Consensus 92 ~l~~~~~~~g~~V~~~dg~-~VG~VTSg 118 (172)
.++.+.++.|++| . ++ .+|.|.|-
T Consensus 54 rVe~G~LK~G~~V-P--g~~~vg~VkSI 78 (116)
T 1xe1_A 54 TVESGMIGVGFKV-K--GPSGIGGIVRI 78 (116)
T ss_dssp EEEEEEEETTCEE-E--CSSCEEEEEEE
T ss_pred EEeEEEEcCCCCc-C--CCceEEEEEEE
Confidence 4444556677777 2 33 56776664
Done!