RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy12057
         (172 letters)



>d1v5va1 b.44.2.1 (A:313-401) Glycine cleavage system T protein,
           GcvT {Pyrococcus horikoshii [TaxId: 53953]}
          Length = 89

 Score = 86.7 bits (215), Expect = 1e-23
 Identities = 24/85 (28%), Positives = 40/85 (47%), Gaps = 2/85 (2%)

Query: 86  RKRTGLTSTGVPI-RPGYEIFNANDQRVGAITSGCPSPSLKKNIAMGYIEPAYSKVGVEL 144
           RK          I R GY+++  N + +G +TSG  SP L   I + +++  Y+K G+E+
Sbjct: 1   RKLVHFKMIDKGIPREGYKVYA-NGEMIGEVTSGTLSPLLNVGIGIAFVKEEYAKPGIEI 59

Query: 145 WVRVRDKRVDVKVTKMPFLKSNYHT 169
            V +R +R        PF     + 
Sbjct: 60  EVEIRGQRKKAVTVTPPFYDPKKYG 84


>d1wosa1 b.44.2.1 (A:279-361) Glycine cleavage system T protein,
           GcvT {Thermotoga maritima [TaxId: 2336]}
          Length = 83

 Score = 78.3 bits (193), Expect = 2e-20
 Identities = 30/83 (36%), Positives = 41/83 (49%), Gaps = 2/83 (2%)

Query: 86  RKRTGLTSTGVPI-RPGYEIFNANDQRVGAITSGCPSPSLKKNIAMGYIEPAYSKVGVEL 144
           RK   L  +G  I R GYE+   N +RVG ITSG  SP+L K+IA+  +  +        
Sbjct: 1   RKLVALELSGKRIARKGYEVLK-NGERVGEITSGNFSPTLGKSIALALVSKSVKIGDQLG 59

Query: 145 WVRVRDKRVDVKVTKMPFLKSNY 167
            V    K V+  V K PF + + 
Sbjct: 60  VVFPGGKLVEALVVKKPFYRGSV 82


>d1vloa1 b.44.2.1 (A:278-367) Glycine cleavage system T protein,
           GcvT {Escherichia coli [TaxId: 562]}
          Length = 90

 Score = 74.8 bits (184), Expect = 5e-19
 Identities = 25/84 (29%), Positives = 41/84 (48%), Gaps = 7/84 (8%)

Query: 85  SRKRTGLTSTGVPI-RPGYEIF---NANDQRVGAITSGCPSPSLKKNIAMGYIEPAYSKV 140
           + K  GL  T   + R    +       +Q  G ITSG  SP+L  +IA+  +      +
Sbjct: 1   TEKLVGLVMTEKGVLRNELPVRFTDAQGNQHEGIITSGTFSPTLGYSIALARVP---EGI 57

Query: 141 GVELWVRVRDKRVDVKVTKMPFLK 164
           G    V++R++ + VKVTK  F++
Sbjct: 58  GETAIVQIRNREMPVKVTKPVFVR 81


>d1pj5a1 b.44.2.1 (A:743-830) N,N-dimethylglycine oxidase,
           C-terminal domain {Arthrobacter globiformis [TaxId:
           1665]}
          Length = 88

 Score = 73.3 bits (180), Expect = 2e-18
 Identities = 22/79 (27%), Positives = 34/79 (43%), Gaps = 2/79 (2%)

Query: 85  SRKRTGLT-STGVPIRPGYEIFNANDQRVGAITSGCPSPSLKKNIAMGYIEPAYSKVGVE 143
           +R+   LT   G  I  G E     +Q VG +TS     ++ K IA  Y+    S  G  
Sbjct: 1   ARRLRCLTIDDGRSIVLGKEPVFYKEQAVGYVTSAAYGYTVAKPIAYSYLPGTVSV-GDS 59

Query: 144 LWVRVRDKRVDVKVTKMPF 162
           + +    +R+   VT+ P 
Sbjct: 60  VDIEYFGRRITATVTEDPL 78


>d1kkoa2 d.54.1.1 (A:1-160) beta-Methylaspartase {Citrobacter
           amalonaticus [TaxId: 35703]}
          Length = 160

 Score = 24.7 bits (54), Expect = 4.9
 Identities = 10/27 (37%), Positives = 13/27 (48%), Gaps = 2/27 (7%)

Query: 77  QSQIKSGVSRKRTGLTSTGVPIRPGYE 103
           Q  IK+G      G   TG P+ PG+ 
Sbjct: 20  QQAIKNG--AGHDGFIYTGDPVTPGFT 44


>d1kcza2 d.54.1.1 (A:1-160) beta-Methylaspartase {Clostridium
           tetanomorphum [TaxId: 1553]}
          Length = 160

 Score = 24.7 bits (54), Expect = 5.6
 Identities = 9/27 (33%), Positives = 11/27 (40%), Gaps = 2/27 (7%)

Query: 77  QSQIKSGVSRKRTGLTSTGVPIRPGYE 103
           Q  IK G      G T TG  +  G+ 
Sbjct: 20  QRAIKKG--AGHDGFTYTGSTVTEGFT 44


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.322    0.136    0.422 

Gapped
Lambda     K      H
   0.267   0.0502    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 638,838
Number of extensions: 26889
Number of successful extensions: 44
Number of sequences better than 10.0: 1
Number of HSP's gapped: 42
Number of HSP's successfully gapped: 10
Length of query: 172
Length of database: 2,407,596
Length adjustment: 79
Effective length of query: 93
Effective length of database: 1,322,926
Effective search space: 123032118
Effective search space used: 123032118
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 50 (23.6 bits)