BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy1206
(531 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|157169412|ref|XP_001651504.1| flap endonuclease-1 [Aedes aegypti]
gi|122094730|sp|Q178M1.1|FEN1_AEDAE RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|108878396|gb|EAT42621.1| AAEL005870-PA [Aedes aegypti]
Length = 380
Score = 249 bits (635), Expect = 4e-63, Method: Compositional matrix adjust.
Identities = 111/142 (78%), Positives = 131/142 (92%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVLE 120
APCEAEAQCAA+VK GKVYATATEDMDALTFGSNILLRH+TFSEARK+PVQEF+ +K+L+
Sbjct: 155 APCEAEAQCAALVKGGKVYATATEDMDALTFGSNILLRHLTFSEARKMPVQEFNYDKILQ 214
Query: 121 GMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGW 180
G+EL+ +EFIDLCILLGCDYCDSIRGIGPK+A+ELI +HR+IEKILEN+DTKKY VPE W
Sbjct: 215 GLELTRDEFIDLCILLGCDYCDSIRGIGPKKAVELINKHRTIEKILENLDTKKYVVPENW 274
Query: 181 LYKEARELFRHPEVADPETIEF 202
Y++AR LF+ PEVA+PE +E
Sbjct: 275 NYQQARVLFKEPEVANPEEVEL 296
Score = 160 bits (404), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 78/111 (70%), Positives = 91/111 (81%), Gaps = 7/111 (6%)
Query: 304 ELVADVAPSSIRES-------RKICIDASMSLYQFLIAVRSEGNQLMSVDGEPTSHLMGT 356
+L+AD+AP +++E RK+ IDASM LYQFLIAVR+EG QL SVDGE TSHLMGT
Sbjct: 8 QLIADLAPFAVKEGEIKNFFGRKVAIDASMCLYQFLIAVRAEGAQLTSVDGETTSHLMGT 67
Query: 357 FYRTIRLVEHGLKPIYVFDGKPPTLKSGELNKRMEKREDAQKALAKAQEQG 407
FYRTIRL+E+G+KP+YVFDGKPP LKSGEL KR EKRE+AQKAL KA E G
Sbjct: 68 FYRTIRLLENGIKPVYVFDGKPPDLKSGELTKRAEKREEAQKALDKATEAG 118
Score = 131 bits (329), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 56/74 (75%), Positives = 67/74 (90%)
Query: 232 FIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGWLYKEAREL 291
FIDLCILLGCDYCDSIRGIGPK+A+ELI +HR+IEKILEN+DTKKY VPE W Y++AR L
Sbjct: 223 FIDLCILLGCDYCDSIRGIGPKKAVELINKHRTIEKILENLDTKKYVVPENWNYQQARVL 282
Query: 292 FRHPEIADPETIEL 305
F+ PE+A+PE +EL
Sbjct: 283 FKEPEVANPEEVEL 296
Score = 89.7 bits (221), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 42/77 (54%), Positives = 53/77 (68%), Gaps = 8/77 (10%)
Query: 3 LKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSSTTQGRLDSFFTI--------R 54
LKW +PDE+GLVKYLCGD+ F EDRIR GAKK+LK +S+ TQGRLDSFF + R
Sbjct: 296 LKWGEPDEEGLVKYLCGDRQFNEDRIRAGAKKILKTKSTATQGRLDSFFKVLPSTPNPKR 355
Query: 55 REEKRKAPCEAEAQCAA 71
+ E +K P +A+
Sbjct: 356 KIEDKKTPASKKAKTTG 372
Score = 89.4 bits (220), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 39/55 (70%), Positives = 47/55 (85%)
Query: 405 EQGKLKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSTTTQGRLDSFFTI 459
E+ +LKW +PDE+GLVKYLCGD+ F EDRIR GAKK+LK +ST TQGRLDSFF +
Sbjct: 292 EEVELKWGEPDEEGLVKYLCGDRQFNEDRIRAGAKKILKTKSTATQGRLDSFFKV 346
>gi|110766831|ref|XP_395769.3| PREDICTED: flap endonuclease 1 [Apis mellifera]
Length = 379
Score = 244 bits (624), Expect = 6e-62, Method: Compositional matrix adjust.
Identities = 111/142 (78%), Positives = 130/142 (91%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVLE 120
APCEAEAQCAAMVKAGKV+ATATEDMDALTFG NILLR +TFSEARK+PVQEFH +KVLE
Sbjct: 155 APCEAEAQCAAMVKAGKVFATATEDMDALTFGCNILLRRLTFSEARKMPVQEFHQDKVLE 214
Query: 121 GMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGW 180
G+ELSH+EFIDLCI+LGCDY +SI+G+GPKRAIELIK HR++EKI+EN+DTKK+ +PE W
Sbjct: 215 GLELSHDEFIDLCIMLGCDYTNSIKGVGPKRAIELIKTHRTLEKIIENLDTKKFPIPEDW 274
Query: 181 LYKEARELFRHPEVADPETIEF 202
YK+AR LF+ PEV DPETI+
Sbjct: 275 NYKQARLLFQEPEVTDPETIDL 296
Score = 156 bits (394), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 77/111 (69%), Positives = 88/111 (79%), Gaps = 7/111 (6%)
Query: 304 ELVADVAPSSIRE-------SRKICIDASMSLYQFLIAVRSEGNQLMSVDGEPTSHLMGT 356
+L+AD+AP++I+E RKI IDASM LYQFLIAVRSEG QL SVDGE TSHLMG
Sbjct: 8 KLIADIAPNAIKEQELKHYFGRKIAIDASMCLYQFLIAVRSEGAQLTSVDGETTSHLMGM 67
Query: 357 FYRTIRLVEHGLKPIYVFDGKPPTLKSGELNKRMEKREDAQKALAKAQEQG 407
FYRTIRLVE G+KP+YVFDGKPP LK GEL KR EKR++AQK L A+E G
Sbjct: 68 FYRTIRLVEQGIKPVYVFDGKPPNLKGGELAKRAEKRDEAQKLLQAAEEAG 118
Score = 125 bits (315), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 61/130 (46%), Positives = 86/130 (66%), Gaps = 5/130 (3%)
Query: 232 FIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGWLYKEAREL 291
FIDLCI+LGCDY +SI+G+GPKRAIELIK HR++EKI+EN+DTKK+ +PE W YK+AR L
Sbjct: 223 FIDLCIMLGCDYTNSIKGVGPKRAIELIKTHRTLEKIIENLDTKKFPIPEDWNYKQARLL 282
Query: 292 FRHPEIADPETIELVADVAPSSIRESRKICIDASMSLYQFLIAVRSEGNQLMSVDGEPTS 351
F+ PE+ DPETI+L + P + +C D + + VR+ +L T
Sbjct: 283 FQEPEVTDPETIDLKW-IEPDEENLVKYLCGDKQFNEER----VRNGAKKLHKARNTSTQ 337
Query: 352 HLMGTFYRTI 361
+ TF++ +
Sbjct: 338 GRLDTFFKVL 347
Score = 86.3 bits (212), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 37/51 (72%), Positives = 45/51 (88%)
Query: 409 LKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSTTTQGRLDSFFTI 459
LKW +PDE+ LVKYLCGDK F E+R+RNGAKKL KAR+T+TQGRLD+FF +
Sbjct: 296 LKWIEPDEENLVKYLCGDKQFNEERVRNGAKKLHKARNTSTQGRLDTFFKV 346
Score = 85.1 bits (209), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 36/53 (67%), Positives = 46/53 (86%)
Query: 1 MTLKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSSTTQGRLDSFFTI 53
+ LKW +PDE+ LVKYLCGDK F E+R+RNGAKKL KAR+++TQGRLD+FF +
Sbjct: 294 IDLKWIEPDEENLVKYLCGDKQFNEERVRNGAKKLHKARNTSTQGRLDTFFKV 346
>gi|58390636|ref|XP_317855.2| AGAP011448-PA [Anopheles gambiae str. PEST]
gi|74802123|sp|Q7Q323.2|FEN1_ANOGA RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|55237026|gb|EAA13029.2| AGAP011448-PA [Anopheles gambiae str. PEST]
Length = 383
Score = 244 bits (622), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 112/142 (78%), Positives = 130/142 (91%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVLE 120
APCEAEAQCAA+V+AGKVYATATEDMDALTFGSNILLRH+TFSEARK+PVQEF EKVL+
Sbjct: 155 APCEAEAQCAALVRAGKVYATATEDMDALTFGSNILLRHLTFSEARKMPVQEFAYEKVLK 214
Query: 121 GMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGW 180
G EL+ +EFIDLCILLGCDYCD+IRGIGPK+AIELI +HRSIEKILE++D +KY VPEGW
Sbjct: 215 GFELTQDEFIDLCILLGCDYCDTIRGIGPKKAIELINKHRSIEKILEHLDRQKYIVPEGW 274
Query: 181 LYKEARELFRHPEVADPETIEF 202
Y++AR+LF+ PEV D +TIE
Sbjct: 275 NYEQARKLFKEPEVQDADTIEL 296
Score = 162 bits (411), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 84/139 (60%), Positives = 103/139 (74%), Gaps = 7/139 (5%)
Query: 304 ELVADVAPSSIRES-------RKICIDASMSLYQFLIAVRSEGNQLMSVDGEPTSHLMGT 356
+L+AD+AP +++E RK+ IDASM LYQFLIAVR+EG QL SVDGE TSHLMGT
Sbjct: 8 QLIADIAPFAVKEGEIKQFFGRKVAIDASMCLYQFLIAVRAEGAQLTSVDGETTSHLMGT 67
Query: 357 FYRTIRLVEHGLKPIYVFDGKPPTLKSGELNKRMEKREDAQKALAKAQEQGKLKWSDPDE 416
FYRTIRL+E+G+KP+YVFDGKPP LKSGELNKR E+RE+AQKAL KA E G + +
Sbjct: 68 FYRTIRLLENGIKPVYVFDGKPPDLKSGELNKRAERREEAQKALDKATEAGATEDIEKFN 127
Query: 417 DGLVKYLCGDKNFAEDRIR 435
LVK N A++ +R
Sbjct: 128 RRLVKVTKHHANEAKELLR 146
Score = 126 bits (317), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 55/74 (74%), Positives = 67/74 (90%)
Query: 232 FIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGWLYKEAREL 291
FIDLCILLGCDYCD+IRGIGPK+AIELI +HRSIEKILE++D +KY VPEGW Y++AR+L
Sbjct: 223 FIDLCILLGCDYCDTIRGIGPKKAIELINKHRSIEKILEHLDRQKYIVPEGWNYEQARKL 282
Query: 292 FRHPEIADPETIEL 305
F+ PE+ D +TIEL
Sbjct: 283 FKEPEVQDADTIEL 296
Score = 88.6 bits (218), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 37/51 (72%), Positives = 46/51 (90%)
Query: 409 LKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSTTTQGRLDSFFTI 459
LKWS+PDE+GLVK+LCGD+ F EDRIR+GAKK+LK ++T TQGRLDSFF +
Sbjct: 296 LKWSEPDEEGLVKFLCGDRQFNEDRIRSGAKKILKTKNTATQGRLDSFFKV 346
Score = 87.4 bits (215), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 36/53 (67%), Positives = 47/53 (88%)
Query: 1 MTLKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSSTTQGRLDSFFTI 53
+ LKWS+PDE+GLVK+LCGD+ F EDRIR+GAKK+LK +++ TQGRLDSFF +
Sbjct: 294 IELKWSEPDEEGLVKFLCGDRQFNEDRIRSGAKKILKTKNTATQGRLDSFFKV 346
>gi|380015033|ref|XP_003691516.1| PREDICTED: flap endonuclease 1-like [Apis florea]
Length = 383
Score = 243 bits (621), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 110/142 (77%), Positives = 130/142 (91%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVLE 120
APCEAEAQCAAMVKAGKV+ATATEDMDALTFG NILLR +TFSEARK+PVQEFH +KVLE
Sbjct: 155 APCEAEAQCAAMVKAGKVFATATEDMDALTFGCNILLRRLTFSEARKMPVQEFHQDKVLE 214
Query: 121 GMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGW 180
G+ELSH+EFIDLCI+LGCDY +SI+G+GPKRAIELIK HR++EKI+EN+DTKK+ +PE W
Sbjct: 215 GLELSHDEFIDLCIMLGCDYTNSIKGVGPKRAIELIKTHRTLEKIVENLDTKKFPIPEDW 274
Query: 181 LYKEARELFRHPEVADPETIEF 202
YK+AR LF+ PE+ DPETI+
Sbjct: 275 NYKQARLLFQKPEITDPETIDL 296
Score = 155 bits (393), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 76/111 (68%), Positives = 88/111 (79%), Gaps = 7/111 (6%)
Query: 304 ELVADVAPSSIRE-------SRKICIDASMSLYQFLIAVRSEGNQLMSVDGEPTSHLMGT 356
+L+AD+AP++I+E RKI IDASM LYQFLIAVRSEG QL SVDGE TSHLMG
Sbjct: 8 KLIADIAPNAIKEQELKHYFGRKIAIDASMCLYQFLIAVRSEGAQLTSVDGETTSHLMGM 67
Query: 357 FYRTIRLVEHGLKPIYVFDGKPPTLKSGELNKRMEKREDAQKALAKAQEQG 407
FYRTIRLVE G+KP+Y+FDGKPP LK GEL KR EKR++AQK L A+E G
Sbjct: 68 FYRTIRLVEQGIKPVYIFDGKPPNLKGGELAKRAEKRDEAQKLLQAAEEAG 118
Score = 125 bits (313), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 62/130 (47%), Positives = 86/130 (66%), Gaps = 5/130 (3%)
Query: 232 FIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGWLYKEAREL 291
FIDLCI+LGCDY +SI+G+GPKRAIELIK HR++EKI+EN+DTKK+ +PE W YK+AR L
Sbjct: 223 FIDLCIMLGCDYTNSIKGVGPKRAIELIKTHRTLEKIVENLDTKKFPIPEDWNYKQARLL 282
Query: 292 FRHPEIADPETIELVADVAPSSIRESRKICIDASMSLYQFLIAVRSEGNQLMSVDGEPTS 351
F+ PEI DPETI+L + P + +C D + + VR+ +L T
Sbjct: 283 FQKPEITDPETIDLKW-IEPDEEGLVKYLCGDKQFNEER----VRNGAKKLHKARNTSTQ 337
Query: 352 HLMGTFYRTI 361
+ TF++ +
Sbjct: 338 GRLDTFFKVL 347
Score = 88.6 bits (218), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 38/51 (74%), Positives = 46/51 (90%)
Query: 409 LKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSTTTQGRLDSFFTI 459
LKW +PDE+GLVKYLCGDK F E+R+RNGAKKL KAR+T+TQGRLD+FF +
Sbjct: 296 LKWIEPDEEGLVKYLCGDKQFNEERVRNGAKKLHKARNTSTQGRLDTFFKV 346
Score = 87.4 bits (215), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 37/53 (69%), Positives = 47/53 (88%)
Query: 1 MTLKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSSTTQGRLDSFFTI 53
+ LKW +PDE+GLVKYLCGDK F E+R+RNGAKKL KAR+++TQGRLD+FF +
Sbjct: 294 IDLKWIEPDEEGLVKYLCGDKQFNEERVRNGAKKLHKARNTSTQGRLDTFFKV 346
>gi|193659550|ref|XP_001944971.1| PREDICTED: flap endonuclease 1 [Acyrthosiphon pisum]
Length = 380
Score = 242 bits (618), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 109/143 (76%), Positives = 129/143 (90%)
Query: 60 KAPCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVL 119
+APCEAEAQCAAMVKAGKVYATATEDMDALTFGS +LLRHMTFSEARK+P+QEF L+ VL
Sbjct: 154 EAPCEAEAQCAAMVKAGKVYATATEDMDALTFGSPVLLRHMTFSEARKMPIQEFQLDSVL 213
Query: 120 EGMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEG 179
E ME+S +EFIDLCILLGCDYC+SI+G+GPKRAIEL+++++S+E I+EN+DTKKY VPE
Sbjct: 214 ETMEMSRDEFIDLCILLGCDYCNSIKGVGPKRAIELMRQYKSLENIIENLDTKKYQVPED 273
Query: 180 WLYKEARELFRHPEVADPETIEF 202
W YKEAR LF PE+ DPETI+
Sbjct: 274 WPYKEARRLFIEPEITDPETIDL 296
Score = 156 bits (394), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 78/125 (62%), Positives = 96/125 (76%), Gaps = 7/125 (5%)
Query: 304 ELVADVAPSSIRES-------RKICIDASMSLYQFLIAVRSEGNQLMSVDGEPTSHLMGT 356
+L+AD AP++I+E+ RKI IDASMSLYQFLIAVRSEG QL S DGE TSH+MGT
Sbjct: 8 KLIADFAPNAIKENEIKNHFGRKIAIDASMSLYQFLIAVRSEGAQLTSADGETTSHIMGT 67
Query: 357 FYRTIRLVEHGLKPIYVFDGKPPTLKSGELNKRMEKREDAQKALAKAQEQGKLKWSDPDE 416
FYRTIRL+E+G+KP+YVFDGKPP +KS EL KR ++R++AQK+L KA+E G D
Sbjct: 68 FYRTIRLLENGIKPVYVFDGKPPQMKSSELEKRADRRQEAQKSLEKAEEAGDATGIDKFS 127
Query: 417 DGLVK 421
LVK
Sbjct: 128 KRLVK 132
Score = 125 bits (315), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 54/74 (72%), Positives = 66/74 (89%)
Query: 232 FIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGWLYKEAREL 291
FIDLCILLGCDYC+SI+G+GPKRAIEL+++++S+E I+EN+DTKKY VPE W YKEAR L
Sbjct: 223 FIDLCILLGCDYCNSIKGVGPKRAIELMRQYKSLENIIENLDTKKYQVPEDWPYKEARRL 282
Query: 292 FRHPEIADPETIEL 305
F PEI DPETI+L
Sbjct: 283 FIEPEITDPETIDL 296
Score = 93.6 bits (231), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 39/51 (76%), Positives = 47/51 (92%)
Query: 3 LKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSSTTQGRLDSFFTI 53
LKW DPDE+GLVK+LCG++ F EDR+RNGAKKL+KARS TTQGRLDSFF++
Sbjct: 296 LKWIDPDEEGLVKFLCGNRGFNEDRVRNGAKKLIKARSGTTQGRLDSFFSV 346
Score = 92.8 bits (229), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 39/51 (76%), Positives = 47/51 (92%)
Query: 409 LKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSTTTQGRLDSFFTI 459
LKW DPDE+GLVK+LCG++ F EDR+RNGAKKL+KARS TTQGRLDSFF++
Sbjct: 296 LKWIDPDEEGLVKFLCGNRGFNEDRVRNGAKKLIKARSGTTQGRLDSFFSV 346
>gi|312385968|gb|EFR30352.1| hypothetical protein AND_00127 [Anopheles darlingi]
Length = 385
Score = 242 bits (617), Expect = 4e-61, Method: Compositional matrix adjust.
Identities = 111/142 (78%), Positives = 127/142 (89%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVLE 120
APCEAEAQCAA+VKAGKVYATATEDMDALTFGSNILLRH+TFSEARK+PVQEFH EKVL+
Sbjct: 155 APCEAEAQCAALVKAGKVYATATEDMDALTFGSNILLRHLTFSEARKMPVQEFHYEKVLK 214
Query: 121 GMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGW 180
G EL+ +EFID+CILLGCDYCD+IRGIGPK+AIELI +HRSIE+ILE++D KY VPE W
Sbjct: 215 GFELTADEFIDMCILLGCDYCDTIRGIGPKKAIELINKHRSIEQILEHLDKSKYVVPEDW 274
Query: 181 LYKEARELFRHPEVADPETIEF 202
Y++AR LF+ PEVAD IE
Sbjct: 275 NYQQARRLFKEPEVADAAEIEL 296
Score = 164 bits (415), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 85/139 (61%), Positives = 104/139 (74%), Gaps = 7/139 (5%)
Query: 304 ELVADVAPSSIRES-------RKICIDASMSLYQFLIAVRSEGNQLMSVDGEPTSHLMGT 356
+L+ADVAP +++E RK+ IDASM LYQFLIAVR+EG QL SVDGE TSHLMGT
Sbjct: 8 QLIADVAPFAVKEGEIKTFFGRKVAIDASMCLYQFLIAVRAEGAQLTSVDGETTSHLMGT 67
Query: 357 FYRTIRLVEHGLKPIYVFDGKPPTLKSGELNKRMEKREDAQKALAKAQEQGKLKWSDPDE 416
FYRTIRL+E+G+KP+YVFDGKPP LKSGELNKR E+RE+AQKAL KA E G ++ +
Sbjct: 68 FYRTIRLLENGIKPVYVFDGKPPELKSGELNKRAERREEAQKALDKATEAGAVEDIEKFN 127
Query: 417 DGLVKYLCGDKNFAEDRIR 435
LVK N A++ +R
Sbjct: 128 RRLVKVTKQHANEAKELLR 146
Score = 120 bits (301), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 52/74 (70%), Positives = 63/74 (85%)
Query: 232 FIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGWLYKEAREL 291
FID+CILLGCDYCD+IRGIGPK+AIELI +HRSIE+ILE++D KY VPE W Y++AR L
Sbjct: 223 FIDMCILLGCDYCDTIRGIGPKKAIELINKHRSIEQILEHLDKSKYVVPEDWNYQQARRL 282
Query: 292 FRHPEIADPETIEL 305
F+ PE+AD IEL
Sbjct: 283 FKEPEVADAAEIEL 296
Score = 89.4 bits (220), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 38/53 (71%), Positives = 46/53 (86%)
Query: 1 MTLKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSSTTQGRLDSFFTI 53
+ LKWS+PDE+GLVKYLCGD+ F EDRIR GAKK+LK ++S TQGRLDSFF +
Sbjct: 294 IELKWSEPDEEGLVKYLCGDRQFNEDRIRAGAKKILKTKTSATQGRLDSFFKV 346
Score = 88.2 bits (217), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 37/51 (72%), Positives = 45/51 (88%)
Query: 409 LKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSTTTQGRLDSFFTI 459
LKWS+PDE+GLVKYLCGD+ F EDRIR GAKK+LK +++ TQGRLDSFF +
Sbjct: 296 LKWSEPDEEGLVKYLCGDRQFNEDRIRAGAKKILKTKTSATQGRLDSFFKV 346
>gi|350416440|ref|XP_003490949.1| PREDICTED: flap endonuclease 1-like [Bombus impatiens]
Length = 381
Score = 237 bits (605), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 107/142 (75%), Positives = 127/142 (89%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVLE 120
APCEAEAQCAA+VKAGKV+ATATEDMDALTFG N+LLR +TFSEARK+PVQEFH +KVL+
Sbjct: 155 APCEAEAQCAALVKAGKVFATATEDMDALTFGCNVLLRRLTFSEARKMPVQEFHFDKVLK 214
Query: 121 GMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGW 180
+ L+H+EFIDLCI+LGCDY SI+G+GPKRAIELIK HRS+EKI+EN+DTKK+ +PE W
Sbjct: 215 DLGLNHDEFIDLCIMLGCDYTSSIKGVGPKRAIELIKTHRSLEKIVENLDTKKFPIPEDW 274
Query: 181 LYKEARELFRHPEVADPETIEF 202
YKEAR LF+ PEV DPETI+
Sbjct: 275 NYKEARLLFQEPEVTDPETIDL 296
Score = 154 bits (389), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 75/111 (67%), Positives = 88/111 (79%), Gaps = 7/111 (6%)
Query: 304 ELVADVAPSSIRE-------SRKICIDASMSLYQFLIAVRSEGNQLMSVDGEPTSHLMGT 356
+L+AD+APS+I+E RK+ IDASM LYQFLIAVRSEG QL SV+GE TSHLMGT
Sbjct: 8 KLIADIAPSAIKEQELKHYFGRKVAIDASMCLYQFLIAVRSEGAQLTSVNGETTSHLMGT 67
Query: 357 FYRTIRLVEHGLKPIYVFDGKPPTLKSGELNKRMEKREDAQKALAKAQEQG 407
FYRTIRLVE G+KP+YVFDGKPP LK GEL KR E+R++ QK L A+E G
Sbjct: 68 FYRTIRLVEQGIKPVYVFDGKPPNLKGGELAKRAERRDETQKLLRAAEEAG 118
Score = 125 bits (315), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 63/130 (48%), Positives = 85/130 (65%), Gaps = 5/130 (3%)
Query: 232 FIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGWLYKEAREL 291
FIDLCI+LGCDY SI+G+GPKRAIELIK HRS+EKI+EN+DTKK+ +PE W YKEAR L
Sbjct: 223 FIDLCIMLGCDYTSSIKGVGPKRAIELIKTHRSLEKIVENLDTKKFPIPEDWNYKEARLL 282
Query: 292 FRHPEIADPETIELVADVAPSSIRESRKICIDASMSLYQFLIAVRSEGNQLMSVDGEPTS 351
F+ PE+ DPETI+L P+ + +C D + + VR+ +L T
Sbjct: 283 FQEPEVTDPETIDLKW-TEPNEEGLVKYLCGDKQFNEER----VRNGAKKLYKARNTSTQ 337
Query: 352 HLMGTFYRTI 361
+ TF++ +
Sbjct: 338 GRLDTFFKVL 347
Score = 89.0 bits (219), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 37/51 (72%), Positives = 47/51 (92%)
Query: 409 LKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSTTTQGRLDSFFTI 459
LKW++P+E+GLVKYLCGDK F E+R+RNGAKKL KAR+T+TQGRLD+FF +
Sbjct: 296 LKWTEPNEEGLVKYLCGDKQFNEERVRNGAKKLYKARNTSTQGRLDTFFKV 346
Score = 88.2 bits (217), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 40/64 (62%), Positives = 53/64 (82%), Gaps = 3/64 (4%)
Query: 1 MTLKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSSTTQGRLDSFFTI---RREE 57
+ LKW++P+E+GLVKYLCGDK F E+R+RNGAKKL KAR+++TQGRLD+FF + +
Sbjct: 294 IDLKWTEPNEEGLVKYLCGDKQFNEERVRNGAKKLYKARNTSTQGRLDTFFKVLPNPNPQ 353
Query: 58 KRKA 61
KRKA
Sbjct: 354 KRKA 357
>gi|156398094|ref|XP_001638024.1| predicted protein [Nematostella vectensis]
gi|317374916|sp|A7RRJ0.1|FEN1_NEMVE RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|156225141|gb|EDO45961.1| predicted protein [Nematostella vectensis]
Length = 377
Score = 236 bits (603), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 104/142 (73%), Positives = 127/142 (89%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVLE 120
APCEAEAQCAA+VK+GKVYAT TEDMDALTFG+ ++LRH+TFSEA+K+P++EFHL+ VL
Sbjct: 155 APCEAEAQCAALVKSGKVYATGTEDMDALTFGTTVMLRHLTFSEAKKMPIKEFHLQNVLS 214
Query: 121 GMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGW 180
LS +EFIDLCILLGCDYCDSI+GIGPKR+++LI++HRSI+KILENIDT K+ PE W
Sbjct: 215 EAGLSQDEFIDLCILLGCDYCDSIKGIGPKRSVDLIRQHRSIDKILENIDTSKHPPPENW 274
Query: 181 LYKEARELFRHPEVADPETIEF 202
LYKEARELF++PEV +PE IE
Sbjct: 275 LYKEARELFKNPEVRNPEEIEL 296
Score = 155 bits (393), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 75/111 (67%), Positives = 92/111 (82%), Gaps = 7/111 (6%)
Query: 304 ELVADVAPSSIRES-------RKICIDASMSLYQFLIAVRSEGNQLMSVDGEPTSHLMGT 356
+L+ D+APS I+E+ RKI IDASMS+YQFLIAVRS+G+QL + GE TSHLMG
Sbjct: 8 KLLGDIAPSGIKENEIKNYFGRKIAIDASMSIYQFLIAVRSDGSQLTNEAGETTSHLMGL 67
Query: 357 FYRTIRLVEHGLKPIYVFDGKPPTLKSGELNKRMEKREDAQKALAKAQEQG 407
FYRTIR+VE+G+KP+YVFDGKPP LKSGEL KR E+RE+AQKAL+KA+E G
Sbjct: 68 FYRTIRMVENGIKPVYVFDGKPPQLKSGELAKRTERREEAQKALSKAEEAG 118
Score = 131 bits (330), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 56/74 (75%), Positives = 68/74 (91%)
Query: 232 FIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGWLYKEAREL 291
FIDLCILLGCDYCDSI+GIGPKR+++LI++HRSI+KILENIDT K+ PE WLYKEAREL
Sbjct: 223 FIDLCILLGCDYCDSIKGIGPKRSVDLIRQHRSIDKILENIDTSKHPPPENWLYKEAREL 282
Query: 292 FRHPEIADPETIEL 305
F++PE+ +PE IEL
Sbjct: 283 FKNPEVRNPEEIEL 296
Score = 76.3 bits (186), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 37/80 (46%), Positives = 52/80 (65%)
Query: 391 EKREDAQKALAKAQEQGKLKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSTTTQ 450
E RE + + E+ +LKW +P+E+ LV ++C +K F+EDRIR+G KKL KAR +TQ
Sbjct: 278 EARELFKNPEVRNPEEIELKWEEPNEEALVTFMCQEKGFSEDRIRSGIKKLTKARHGSTQ 337
Query: 451 GRLDSFFTIRREEKRKSRCQ 470
GRLDSFF + K + Q
Sbjct: 338 GRLDSFFKVLPSPANKRKLQ 357
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 31/53 (58%), Positives = 42/53 (79%)
Query: 1 MTLKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSSTTQGRLDSFFTI 53
+ LKW +P+E+ LV ++C +K F+EDRIR+G KKL KAR +TQGRLDSFF +
Sbjct: 294 IELKWEEPNEEALVTFMCQEKGFSEDRIRSGIKKLTKARHGSTQGRLDSFFKV 346
>gi|242014497|ref|XP_002427926.1| Flap endonuclease 1-B, putative [Pediculus humanus corporis]
gi|212512410|gb|EEB15188.1| Flap endonuclease 1-B, putative [Pediculus humanus corporis]
Length = 380
Score = 236 bits (602), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 106/142 (74%), Positives = 128/142 (90%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVLE 120
APCEAEAQCAA+VKAGKVYATATEDMDALTFGSNI+LRH+TFSEARK+PVQE +L+KVL
Sbjct: 155 APCEAEAQCAALVKAGKVYATATEDMDALTFGSNIILRHLTFSEARKMPVQEIYLDKVLA 214
Query: 121 GMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGW 180
+E++ EFIDLCILLGCDYCDSI+GIGPKRAIELIK+H+S+EKILEN+D+ KY VPE W
Sbjct: 215 ELEMTQNEFIDLCILLGCDYCDSIKGIGPKRAIELIKKHKSLEKILENLDSGKYVVPEDW 274
Query: 181 LYKEARELFRHPEVADPETIEF 202
+++EAR+LF +P+V D +E
Sbjct: 275 IFQEARKLFINPDVCDASNVEL 296
Score = 162 bits (409), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 83/125 (66%), Positives = 98/125 (78%), Gaps = 7/125 (5%)
Query: 304 ELVADVAPSSIRES-------RKICIDASMSLYQFLIAVRSEGNQLMSVDGEPTSHLMGT 356
+L++DVAP++I+ S RKI IDASM+LYQFLIAVRSEG QL GE TSHLMGT
Sbjct: 8 KLLSDVAPNAIKFSDIKNYFGRKIAIDASMTLYQFLIAVRSEGAQLTDSSGETTSHLMGT 67
Query: 357 FYRTIRLVEHGLKPIYVFDGKPPTLKSGELNKRMEKREDAQKALAKAQEQGKLKWSDPDE 416
FYRTIR+VE+G+KP+YVFDGKPP LKSGEL+KR EKRE+AQKALAKA+E G + D
Sbjct: 68 FYRTIRMVENGIKPVYVFDGKPPELKSGELSKRAEKREEAQKALAKAEESGNTEEVDKFS 127
Query: 417 DGLVK 421
LVK
Sbjct: 128 RRLVK 132
Score = 123 bits (308), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 52/74 (70%), Positives = 66/74 (89%)
Query: 232 FIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGWLYKEAREL 291
FIDLCILLGCDYCDSI+GIGPKRAIELIK+H+S+EKILEN+D+ KY VPE W+++EAR+L
Sbjct: 223 FIDLCILLGCDYCDSIKGIGPKRAIELIKKHKSLEKILENLDSGKYVVPEDWIFQEARKL 282
Query: 292 FRHPEIADPETIEL 305
F +P++ D +EL
Sbjct: 283 FINPDVCDASNVEL 296
Score = 85.5 bits (210), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 36/51 (70%), Positives = 44/51 (86%)
Query: 3 LKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSSTTQGRLDSFFTI 53
LKW++PD +GLVKYLCGDK F E+R+RNGAKKLLK R+ TQGRLD+FF +
Sbjct: 296 LKWNEPDTEGLVKYLCGDKLFNEERVRNGAKKLLKGRTGQTQGRLDTFFKV 346
Score = 85.1 bits (209), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 38/60 (63%), Positives = 46/60 (76%)
Query: 409 LKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSTTTQGRLDSFFTIRREEKRKSR 468
LKW++PD +GLVKYLCGDK F E+R+RNGAKKLLK R+ TQGRLD+FF + K R
Sbjct: 296 LKWNEPDTEGLVKYLCGDKLFNEERVRNGAKKLLKGRTGQTQGRLDTFFKVISTSPAKKR 355
>gi|340717150|ref|XP_003397050.1| PREDICTED: LOW QUALITY PROTEIN: flap endonuclease 1-like [Bombus
terrestris]
Length = 381
Score = 236 bits (602), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 108/142 (76%), Positives = 125/142 (88%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVLE 120
APCEAEAQCAA+VKAGKV+ATATEDMDALTFG NILLR +TFSEARK+PVQEFH +KVLE
Sbjct: 155 APCEAEAQCAALVKAGKVFATATEDMDALTFGCNILLRRLTFSEARKMPVQEFHFDKVLE 214
Query: 121 GMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGW 180
+ L+H EFIDLCI+LGCDY SI+G+GPKRAIELIK H S+EKI+EN+DTKK+++PE W
Sbjct: 215 DLGLNHNEFIDLCIMLGCDYTSSIKGVGPKRAIELIKTHGSLEKIVENLDTKKFSIPEDW 274
Query: 181 LYKEARELFRHPEVADPETIEF 202
YKEAR LF+ PEV DPETI
Sbjct: 275 NYKEARLLFQEPEVTDPETINM 296
Score = 151 bits (382), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 75/114 (65%), Positives = 88/114 (77%), Gaps = 7/114 (6%)
Query: 304 ELVADVAPSSIRE-------SRKICIDASMSLYQFLIAVRSEGNQLMSVDGEPTSHLMGT 356
+L+AD+APS+I+E RK+ IDASM LYQFLIAVRS+G QL SV GE TSHLMGT
Sbjct: 8 KLIADIAPSAIKEQELKHYFGRKVAIDASMCLYQFLIAVRSDGAQLTSVHGETTSHLMGT 67
Query: 357 FYRTIRLVEHGLKPIYVFDGKPPTLKSGELNKRMEKREDAQKALAKAQEQGKLK 410
FYRTIRLVE G+KP+YVFDGKPP LK GEL KR E+R++ QK L A+E G K
Sbjct: 68 FYRTIRLVEQGIKPVYVFDGKPPDLKGGELAKRDERRDETQKLLQAAEEAGNAK 121
Score = 122 bits (306), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 52/74 (70%), Positives = 64/74 (86%)
Query: 232 FIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGWLYKEAREL 291
FIDLCI+LGCDY SI+G+GPKRAIELIK H S+EKI+EN+DTKK+++PE W YKEAR L
Sbjct: 223 FIDLCIMLGCDYTSSIKGVGPKRAIELIKTHGSLEKIVENLDTKKFSIPEDWNYKEARLL 282
Query: 292 FRHPEIADPETIEL 305
F+ PE+ DPETI +
Sbjct: 283 FQEPEVTDPETINM 296
Score = 89.7 bits (221), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 37/51 (72%), Positives = 47/51 (92%)
Query: 409 LKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSTTTQGRLDSFFTI 459
+KW++PDE+GLVKYLCGDK F E+R+RNGAKKL KAR+T+TQGRLD+FF +
Sbjct: 296 MKWTEPDEEGLVKYLCGDKQFNEERVRNGAKKLYKARNTSTQGRLDTFFKV 346
Score = 89.0 bits (219), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 36/53 (67%), Positives = 48/53 (90%)
Query: 1 MTLKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSSTTQGRLDSFFTI 53
+ +KW++PDE+GLVKYLCGDK F E+R+RNGAKKL KAR+++TQGRLD+FF +
Sbjct: 294 INMKWTEPDEEGLVKYLCGDKQFNEERVRNGAKKLYKARNTSTQGRLDTFFKV 346
>gi|332021297|gb|EGI61676.1| Flap endonuclease 1-B [Acromyrmex echinatior]
Length = 381
Score = 236 bits (601), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 105/142 (73%), Positives = 126/142 (88%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVLE 120
APCEAEAQCAA+VKAGKV+ATATEDMDALTFG N+LLR +TFSEARKLPVQE H +KVL
Sbjct: 155 APCEAEAQCAALVKAGKVFATATEDMDALTFGCNVLLRRLTFSEARKLPVQEIHFDKVLA 214
Query: 121 GMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGW 180
G+EL+H EFIDLCI+LGCDY +SI+G+GPKRAIELIK HRS+EKI+ENID KKY +PE W
Sbjct: 215 GLELNHNEFIDLCIMLGCDYTNSIKGVGPKRAIELIKNHRSLEKIIENIDVKKYPIPEDW 274
Query: 181 LYKEARELFRHPEVADPETIEF 202
YK+AR LF+ PEV++P+ ++
Sbjct: 275 NYKDARLLFQEPEVSNPDDVQL 296
Score = 160 bits (404), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 81/125 (64%), Positives = 95/125 (76%), Gaps = 7/125 (5%)
Query: 304 ELVADVAPSSIRE-------SRKICIDASMSLYQFLIAVRSEGNQLMSVDGEPTSHLMGT 356
+L+ADVAP +I+E RKI IDASM LYQFLIAVRSEG QL +VDGE TSHLMGT
Sbjct: 8 KLIADVAPEAIKERELKHYFGRKIAIDASMCLYQFLIAVRSEGAQLTTVDGETTSHLMGT 67
Query: 357 FYRTIRLVEHGLKPIYVFDGKPPTLKSGELNKRMEKREDAQKALAKAQEQGKLKWSDPDE 416
FYRTIR+VE G+KP+YVFDGKPP LKSGEL KR E+R++AQK L A+E G ++ D
Sbjct: 68 FYRTIRMVEQGIKPVYVFDGKPPNLKSGELTKRAERRDEAQKLLQAAEEDGNVEAIDKFN 127
Query: 417 DGLVK 421
LVK
Sbjct: 128 RRLVK 132
Score = 120 bits (302), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 50/74 (67%), Positives = 65/74 (87%)
Query: 232 FIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGWLYKEAREL 291
FIDLCI+LGCDY +SI+G+GPKRAIELIK HRS+EKI+ENID KKY +PE W YK+AR L
Sbjct: 223 FIDLCIMLGCDYTNSIKGVGPKRAIELIKNHRSLEKIIENIDVKKYPIPEDWNYKDARLL 282
Query: 292 FRHPEIADPETIEL 305
F+ PE+++P+ ++L
Sbjct: 283 FQEPEVSNPDDVQL 296
Score = 90.9 bits (224), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 39/52 (75%), Positives = 48/52 (92%)
Query: 408 KLKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSTTTQGRLDSFFTI 459
+LKWS+PDE+GLVK+LCGDK F E+R+RNGAKKL KAR+T+TQGRLDSFF +
Sbjct: 295 QLKWSEPDEEGLVKFLCGDKQFNEERVRNGAKKLHKARNTSTQGRLDSFFKV 346
Score = 89.7 bits (221), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 38/51 (74%), Positives = 47/51 (92%)
Query: 3 LKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSSTTQGRLDSFFTI 53
LKWS+PDE+GLVK+LCGDK F E+R+RNGAKKL KAR+++TQGRLDSFF +
Sbjct: 296 LKWSEPDEEGLVKFLCGDKQFNEERVRNGAKKLHKARNTSTQGRLDSFFKV 346
>gi|443720454|gb|ELU10206.1| hypothetical protein CAPTEDRAFT_21886 [Capitella teleta]
Length = 377
Score = 235 bits (600), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 105/142 (73%), Positives = 126/142 (88%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVLE 120
APCEAEAQCA++VK G VYAT TEDMDALTFGS +LLRH+TFSEARK+P++EF LEKVL
Sbjct: 155 APCEAEAQCASLVKGGHVYATGTEDMDALTFGSTVLLRHLTFSEARKMPIKEFSLEKVLA 214
Query: 121 GMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGW 180
G+ELS+EEFIDLCILLGCDYCDSIRGIGPKRA++LIK+HRSIE +L+NIDTKKYT+PE W
Sbjct: 215 GLELSYEEFIDLCILLGCDYCDSIRGIGPKRAVDLIKQHRSIEAVLKNIDTKKYTIPEDW 274
Query: 181 LYKEARELFRHPEVADPETIEF 202
+++ARELF+ P+V +E
Sbjct: 275 PFEQARELFKQPDVLKDSEVEL 296
Score = 139 bits (350), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 62/102 (60%), Positives = 82/102 (80%), Gaps = 7/102 (6%)
Query: 304 ELVADVAPSSIRES-------RKICIDASMSLYQFLIAVRSEGNQLMSVDGEPTSHLMGT 356
+++ D APS+++E+ RK+ IDASM +YQFLIAVR EGN L + DGE TSHLMG
Sbjct: 8 KVIGDYAPSAVKENEIKNFFGRKVAIDASMCIYQFLIAVRQEGNMLTNADGETTSHLMGI 67
Query: 357 FYRTIRLVEHGLKPIYVFDGKPPTLKSGELNKRMEKREDAQK 398
FYRT+R+++HG+KP+YVFDGKPP +KSGEL+KR +RE+AQK
Sbjct: 68 FYRTLRMIDHGIKPVYVFDGKPPDMKSGELSKRAGRREEAQK 109
Score = 124 bits (311), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 55/82 (67%), Positives = 69/82 (84%), Gaps = 1/82 (1%)
Query: 225 AIELLYS-FIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGW 283
+EL Y FIDLCILLGCDYCDSIRGIGPKRA++LIK+HRSIE +L+NIDTKKYT+PE W
Sbjct: 215 GLELSYEEFIDLCILLGCDYCDSIRGIGPKRAVDLIKQHRSIEAVLKNIDTKKYTIPEDW 274
Query: 284 LYKEARELFRHPEIADPETIEL 305
+++ARELF+ P++ +EL
Sbjct: 275 PFEQARELFKQPDVLKDSEVEL 296
Score = 71.2 bits (173), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 31/51 (60%), Positives = 40/51 (78%)
Query: 3 LKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSSTTQGRLDSFFTI 53
LKW++P E+ L+K++ +K F EDRIRNG KKL KAR +TQGRLDSFF +
Sbjct: 296 LKWTEPKEEELIKFMVEEKGFNEDRIRNGCKKLQKARHGSTQGRLDSFFKV 346
Score = 71.2 bits (173), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 36/61 (59%), Positives = 44/61 (72%), Gaps = 2/61 (3%)
Query: 409 LKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSTTTQGRLDSFF--TIRREEKRK 466
LKW++P E+ L+K++ +K F EDRIRNG KKL KAR +TQGRLDSFF T KRK
Sbjct: 296 LKWTEPKEEELIKFMVEEKGFNEDRIRNGCKKLQKARHGSTQGRLDSFFKVTSTTSTKRK 355
Query: 467 S 467
S
Sbjct: 356 S 356
>gi|383859686|ref|XP_003705323.1| PREDICTED: flap endonuclease 1-like [Megachile rotundata]
Length = 383
Score = 234 bits (598), Expect = 6e-59, Method: Compositional matrix adjust.
Identities = 108/142 (76%), Positives = 127/142 (89%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVLE 120
APCEAEAQCAA+VKAGKV+ATATEDMDALTFG N+LLR +TFSEARK+PVQEFH +KVLE
Sbjct: 155 APCEAEAQCAALVKAGKVFATATEDMDALTFGCNVLLRRLTFSEARKMPVQEFHHDKVLE 214
Query: 121 GMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGW 180
G+ L+ +EFIDLCI+LGCDY +SI+G+GPKRA+ELIK HRS+EKILEN+DT KY VPE W
Sbjct: 215 GLGLNQDEFIDLCIMLGCDYTNSIKGVGPKRAMELIKTHRSLEKILENLDTNKYPVPEDW 274
Query: 181 LYKEARELFRHPEVADPETIEF 202
YK+AR LF+ PEVA+ E IEF
Sbjct: 275 NYKQARLLFQEPEVANVEEIEF 296
Score = 154 bits (390), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 76/111 (68%), Positives = 87/111 (78%), Gaps = 7/111 (6%)
Query: 304 ELVADVAPSSIRE-------SRKICIDASMSLYQFLIAVRSEGNQLMSVDGEPTSHLMGT 356
+L+AD+AP +I+E RK+ IDASM LYQFLIAVRSEG QL +VDGE TSHLMG
Sbjct: 8 KLIADIAPHAIKEKELKHYFGRKVAIDASMCLYQFLIAVRSEGAQLATVDGETTSHLMGM 67
Query: 357 FYRTIRLVEHGLKPIYVFDGKPPTLKSGELNKRMEKREDAQKALAKAQEQG 407
FYRTIRLVE G+KPIYVFDGKPP LK GEL KR EKR++AQK L A+E G
Sbjct: 68 FYRTIRLVEQGIKPIYVFDGKPPNLKGGELAKRAEKRDEAQKLLQAAEEAG 118
Score = 119 bits (298), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 52/74 (70%), Positives = 63/74 (85%)
Query: 232 FIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGWLYKEAREL 291
FIDLCI+LGCDY +SI+G+GPKRA+ELIK HRS+EKILEN+DT KY VPE W YK+AR L
Sbjct: 223 FIDLCIMLGCDYTNSIKGVGPKRAMELIKTHRSLEKILENLDTNKYPVPEDWNYKQARLL 282
Query: 292 FRHPEIADPETIEL 305
F+ PE+A+ E IE
Sbjct: 283 FQEPEVANVEEIEF 296
Score = 90.5 bits (223), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 38/55 (69%), Positives = 48/55 (87%)
Query: 405 EQGKLKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSTTTQGRLDSFFTI 459
E+ + KWS+PDEDGLV +LCGDK F+E+R+RNGAKKL KAR T+TQGRLD+FF +
Sbjct: 292 EEIEFKWSEPDEDGLVNFLCGDKQFSEERVRNGAKKLYKARHTSTQGRLDTFFKV 346
Score = 90.1 bits (222), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 42/80 (52%), Positives = 56/80 (70%)
Query: 1 MTLKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSSTTQGRLDSFFTIRREEKRK 60
+ KWS+PDEDGLV +LCGDK F+E+R+RNGAKKL KAR ++TQGRLD+FF + +
Sbjct: 294 IEFKWSEPDEDGLVNFLCGDKQFSEERVRNGAKKLYKARHTSTQGRLDTFFKVLPNQNPS 353
Query: 61 APCEAEAQCAAMVKAGKVYA 80
+AE + A K+ K A
Sbjct: 354 PKRKAEEKTVANKKSKKGTA 373
>gi|357601961|gb|EHJ63212.1| flap endonuclease-1 [Danaus plexippus]
Length = 266
Score = 233 bits (593), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 105/142 (73%), Positives = 123/142 (86%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVLE 120
APCEAEAQCA +VK GKVYA ATEDMDALTFG+N+LLRH+TFSEARK+PVQEFHL++VL
Sbjct: 43 APCEAEAQCAELVKGGKVYAVATEDMDALTFGANVLLRHLTFSEARKMPVQEFHLDQVLR 102
Query: 121 GMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGW 180
G+EL EFIDLCILLGCDYC SI+GIGPKRAIELIK+HRSIE++L NIDTKKY+ PE W
Sbjct: 103 GLELEQTEFIDLCILLGCDYCGSIKGIGPKRAIELIKQHRSIEQVLHNIDTKKYSPPENW 162
Query: 181 LYKEARELFRHPEVADPETIEF 202
Y+ AR LF+ PEV + + +E
Sbjct: 163 EYENARRLFQQPEVTEAKDVEL 184
Score = 120 bits (302), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 55/83 (66%), Positives = 68/83 (81%), Gaps = 1/83 (1%)
Query: 224 RAIELLYS-FIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEG 282
R +EL + FIDLCILLGCDYC SI+GIGPKRAIELIK+HRSIE++L NIDTKKY+ PE
Sbjct: 102 RGLELEQTEFIDLCILLGCDYCGSIKGIGPKRAIELIKQHRSIEQVLHNIDTKKYSPPEN 161
Query: 283 WLYKEARELFRHPEIADPETIEL 305
W Y+ AR LF+ PE+ + + +EL
Sbjct: 162 WEYENARRLFQQPEVTEAKDVEL 184
Score = 93.2 bits (230), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 45/78 (57%), Positives = 57/78 (73%), Gaps = 3/78 (3%)
Query: 3 LKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSSTTQGRLDSFFTI---RREEKR 59
LKWSDPDE+GLVK+LCGDK F E+R+RNGAKKL+KAR+ TTQGRLD FF + KR
Sbjct: 184 LKWSDPDEEGLVKFLCGDKQFNEERVRNGAKKLMKARTGTTQGRLDGFFKVLSTTPNPKR 243
Query: 60 KAPCEAEAQCAAMVKAGK 77
KA + ++ + AG+
Sbjct: 244 KAEEDKKSANKKVKTAGR 261
Score = 92.4 bits (228), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 39/51 (76%), Positives = 46/51 (90%)
Query: 409 LKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSTTTQGRLDSFFTI 459
LKWSDPDE+GLVK+LCGDK F E+R+RNGAKKL+KAR+ TTQGRLD FF +
Sbjct: 184 LKWSDPDEEGLVKFLCGDKQFNEERVRNGAKKLMKARTGTTQGRLDGFFKV 234
>gi|307214986|gb|EFN89831.1| Flap endonuclease 1-B [Harpegnathos saltator]
Length = 380
Score = 232 bits (591), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 106/140 (75%), Positives = 124/140 (88%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVLE 120
APCEAEAQCAA+VKAGKV+ATATEDMDALTFG N+LLR +TFSEARKLPVQE H +KVL
Sbjct: 155 APCEAEAQCAALVKAGKVFATATEDMDALTFGCNVLLRRLTFSEARKLPVQEIHFDKVLG 214
Query: 121 GMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGW 180
G+EL+H EFIDLCI+LGCDY SI+G+GPKRAIELIK H+S+EKI+ENIDTKK+ VPE W
Sbjct: 215 GLELNHNEFIDLCIMLGCDYTGSIKGVGPKRAIELIKNHKSLEKIIENIDTKKFPVPEDW 274
Query: 181 LYKEARELFRHPEVADPETI 200
YKEAR LF+ PEV++ + I
Sbjct: 275 NYKEARLLFQEPEVSNADDI 294
Score = 156 bits (394), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 87/147 (59%), Positives = 102/147 (69%), Gaps = 15/147 (10%)
Query: 304 ELVADVAPSSIRE-------SRKICIDASMSLYQFLIAVRSEGNQLMSVDGEPTSHLMGT 356
+L+AD+AP +I+E RKI IDASM LYQFLIAVRSEG QL +VDGE TSHLMG
Sbjct: 8 KLIADIAPEAIKERELKHYFGRKIAIDASMCLYQFLIAVRSEGAQLTTVDGETTSHLMGI 67
Query: 357 FYRTIRLVEHGLKPIYVFDGKPPTLKSGELNKRMEKREDAQKALAKAQEQGKLKWSDPDE 416
FYRTIRLVE G+KP+YVFDGKPP LK GEL KR E+R++AQK L A+E G + D
Sbjct: 68 FYRTIRLVEQGIKPVYVFDGKPPNLKGGELAKRAERRDEAQKLLQAAEEDGDAEAIDKFN 127
Query: 417 DGLVKYLCGDKNFAEDRIRNGAKKLLK 443
LVK K AE+ AK+LLK
Sbjct: 128 RRLVKVT---KTHAEE-----AKQLLK 146
Score = 117 bits (292), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 51/74 (68%), Positives = 63/74 (85%)
Query: 232 FIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGWLYKEAREL 291
FIDLCI+LGCDY SI+G+GPKRAIELIK H+S+EKI+ENIDTKK+ VPE W YKEAR L
Sbjct: 223 FIDLCIMLGCDYTGSIKGVGPKRAIELIKNHKSLEKIIENIDTKKFPVPEDWNYKEARLL 282
Query: 292 FRHPEIADPETIEL 305
F+ PE+++ + I L
Sbjct: 283 FQEPEVSNADDIVL 296
Score = 90.1 bits (222), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 43/85 (50%), Positives = 59/85 (69%), Gaps = 9/85 (10%)
Query: 409 LKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSTTTQGRLDSFFTI--------- 459
LKWS+PDE+ LVK+LCGDK F E+R+RNGAKKL KAR+T+TQGRLDSFF I
Sbjct: 296 LKWSEPDEEDLVKFLCGDKQFNEERVRNGAKKLHKARNTSTQGRLDSFFKILPNPTPTKR 355
Query: 460 RREEKRKSRCQYQCQYQCQYQCQYQ 484
+ EEK+ S + + +++ + +
Sbjct: 356 KTEEKKTSAKKVKASTNVKFRGKAK 380
Score = 87.8 bits (216), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 38/53 (71%), Positives = 47/53 (88%)
Query: 1 MTLKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSSTTQGRLDSFFTI 53
+ LKWS+PDE+ LVK+LCGDK F E+R+RNGAKKL KAR+++TQGRLDSFF I
Sbjct: 294 IVLKWSEPDEEDLVKFLCGDKQFNEERVRNGAKKLHKARNTSTQGRLDSFFKI 346
>gi|91085979|ref|XP_971921.1| PREDICTED: similar to flap endonuclease-1 [Tribolium castaneum]
gi|270009935|gb|EFA06383.1| hypothetical protein TcasGA2_TC009261 [Tribolium castaneum]
Length = 381
Score = 232 bits (591), Expect = 5e-58, Method: Compositional matrix adjust.
Identities = 108/143 (75%), Positives = 122/143 (85%)
Query: 60 KAPCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVL 119
+APCEAEAQCAAMVK G VYATATEDMDALTFGSN+LLRH+TFSEARK+PVQE HL KVL
Sbjct: 154 EAPCEAEAQCAAMVKGGLVYATATEDMDALTFGSNVLLRHLTFSEARKMPVQEIHLSKVL 213
Query: 120 EGMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEG 179
EG+EL + F+DLCILLGCDY +SIRGIGPKRAIELIK+H+SIE+IL+NID KKY PE
Sbjct: 214 EGLELDQKAFVDLCILLGCDYTESIRGIGPKRAIELIKKHKSIEEILKNIDVKKYPPPEN 273
Query: 180 WLYKEARELFRHPEVADPETIEF 202
W Y+ AR+LF PEV D IE
Sbjct: 274 WNYEGARQLFEEPEVMDAAKIEL 296
Score = 155 bits (391), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 80/125 (64%), Positives = 94/125 (75%), Gaps = 7/125 (5%)
Query: 304 ELVADVAPSSIRES-------RKICIDASMSLYQFLIAVRSEGNQLMSVDGEPTSHLMGT 356
+L+ADVAP +IRE RK+ IDASM LYQFLIAVR+E QL SVDGE TSHL+GT
Sbjct: 8 KLLADVAPHAIREGEIKHYFGRKVAIDASMCLYQFLIAVRNESGQLTSVDGETTSHLLGT 67
Query: 357 FYRTIRLVEHGLKPIYVFDGKPPTLKSGELNKRMEKREDAQKALAKAQEQGKLKWSDPDE 416
FYRTIRL+E+G+KP+YVFDGKPP LKS EL+KR E+R++AQKAL KA E G D
Sbjct: 68 FYRTIRLIENGIKPVYVFDGKPPELKSAELSKRQERRDEAQKALDKATELGDATEVDKFN 127
Query: 417 DGLVK 421
LVK
Sbjct: 128 RRLVK 132
Score = 116 bits (291), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 52/75 (69%), Positives = 62/75 (82%)
Query: 231 SFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGWLYKEARE 290
+F+DLCILLGCDY +SIRGIGPKRAIELIK+H+SIE+IL+NID KKY PE W Y+ AR+
Sbjct: 222 AFVDLCILLGCDYTESIRGIGPKRAIELIKKHKSIEEILKNIDVKKYPPPENWNYEGARQ 281
Query: 291 LFRHPEIADPETIEL 305
LF PE+ D IEL
Sbjct: 282 LFEEPEVMDAAKIEL 296
Score = 93.6 bits (231), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 38/52 (73%), Positives = 48/52 (92%)
Query: 408 KLKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSTTTQGRLDSFFTI 459
+LKW+DPDE+G+VK+LCGDK F E+R+RNG KKLLK+RST+TQGRLD FFT+
Sbjct: 295 ELKWTDPDEEGMVKFLCGDKQFNEERVRNGVKKLLKSRSTSTQGRLDGFFTV 346
Score = 92.0 bits (227), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 41/63 (65%), Positives = 52/63 (82%), Gaps = 2/63 (3%)
Query: 1 MTLKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSSTTQGRLDSFFTI--RREEK 58
+ LKW+DPDE+G+VK+LCGDK F E+R+RNG KKLLK+RS++TQGRLD FFT+ K
Sbjct: 294 IELKWTDPDEEGMVKFLCGDKQFNEERVRNGVKKLLKSRSTSTQGRLDGFFTVLSTTPAK 353
Query: 59 RKA 61
RKA
Sbjct: 354 RKA 356
>gi|307173481|gb|EFN64391.1| Flap endonuclease 1-B [Camponotus floridanus]
Length = 382
Score = 231 bits (590), Expect = 5e-58, Method: Compositional matrix adjust.
Identities = 106/142 (74%), Positives = 126/142 (88%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVLE 120
APCEAEAQCAA+VKAGKV+ATATEDMDALTFG +ILLR +T SEARKLPVQE H++KVL
Sbjct: 155 APCEAEAQCAALVKAGKVFATATEDMDALTFGCDILLRRLTLSEARKLPVQEIHMDKVLT 214
Query: 121 GMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGW 180
G+EL+H+EFIDLCI+LGCDY SI+G+GPKRAIELIK +RS++KI+ENIDTKKY +PE W
Sbjct: 215 GLELNHDEFIDLCIMLGCDYTGSIKGVGPKRAIELIKNYRSLDKIIENIDTKKYPIPENW 274
Query: 181 LYKEARELFRHPEVADPETIEF 202
YKEAR LF+ PEVA+ E I+
Sbjct: 275 NYKEARLLFQEPEVANAEDIQL 296
Score = 159 bits (402), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 87/147 (59%), Positives = 106/147 (72%), Gaps = 15/147 (10%)
Query: 304 ELVADVAPSSIRE-------SRKICIDASMSLYQFLIAVRSEGNQLMSVDGEPTSHLMGT 356
+L+AD+AP +I+E RKI IDASM LYQFLIAVRSEG QL +VDGE TSHLMGT
Sbjct: 8 KLIADIAPEAIKERELKHYFGRKIAIDASMCLYQFLIAVRSEGAQLTTVDGETTSHLMGT 67
Query: 357 FYRTIRLVEHGLKPIYVFDGKPPTLKSGELNKRMEKREDAQKALAKAQEQGKLKWSDPDE 416
F+RTIRLVE G+KP+YVFDGKPP LKSGEL KR E+R++AQK L A+E G ++ D
Sbjct: 68 FHRTIRLVEQGIKPVYVFDGKPPNLKSGELAKRAERRDEAQKLLQAAEEDGNVEAIDKFS 127
Query: 417 DGLVKYLCGDKNFAEDRIRNGAKKLLK 443
LVK KN A++ AK+LL+
Sbjct: 128 RRLVKV---TKNHADE-----AKQLLQ 146
Score = 119 bits (298), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 52/74 (70%), Positives = 64/74 (86%)
Query: 232 FIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGWLYKEAREL 291
FIDLCI+LGCDY SI+G+GPKRAIELIK +RS++KI+ENIDTKKY +PE W YKEAR L
Sbjct: 223 FIDLCIMLGCDYTGSIKGVGPKRAIELIKNYRSLDKIIENIDTKKYPIPENWNYKEARLL 282
Query: 292 FRHPEIADPETIEL 305
F+ PE+A+ E I+L
Sbjct: 283 FQEPEVANAEDIQL 296
Score = 89.0 bits (219), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 39/55 (70%), Positives = 48/55 (87%)
Query: 405 EQGKLKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSTTTQGRLDSFFTI 459
E +LKWS+PDE+GLVK+LC DK F E+R+RNGAKKL KAR+T+TQGRLDSFF +
Sbjct: 292 EDIQLKWSEPDEEGLVKFLCSDKQFNEERVRNGAKKLHKARNTSTQGRLDSFFKV 346
Score = 87.4 bits (215), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 41/74 (55%), Positives = 55/74 (74%), Gaps = 10/74 (13%)
Query: 1 MTLKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSSTTQGRLDSFFTI------- 53
+ LKWS+PDE+GLVK+LC DK F E+R+RNGAKKL KAR+++TQGRLDSFF +
Sbjct: 294 IQLKWSEPDEEGLVKFLCSDKQFNEERVRNGAKKLHKARNTSTQGRLDSFFKVLPTKSSP 353
Query: 54 ---RREEKRKAPCE 64
R+ E++K P +
Sbjct: 354 TPKRKIEEKKLPAK 367
>gi|321473340|gb|EFX84308.1| hypothetical protein DAPPUDRAFT_47502 [Daphnia pulex]
Length = 374
Score = 231 bits (589), Expect = 8e-58, Method: Compositional matrix adjust.
Identities = 101/142 (71%), Positives = 129/142 (90%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVLE 120
APCEAEAQCAA+VKAGKVYATATEDMD+LTFGSN+LLR++T+SEA+K+P++EFHL+K+L+
Sbjct: 155 APCEAEAQCAALVKAGKVYATATEDMDSLTFGSNVLLRYLTYSEAKKMPIKEFHLDKILD 214
Query: 121 GMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGW 180
G+ + +EFIDLCI+LGCDYCD+I+GIG KRA ELI +HR IEK++EN+DTKKYTVPE W
Sbjct: 215 GLSYTMDEFIDLCIMLGCDYCDTIKGIGAKRAKELIDKHRCIEKVIENLDTKKYTVPENW 274
Query: 181 LYKEARELFRHPEVADPETIEF 202
Y+EAR LF+ P+VAD ET++
Sbjct: 275 PYQEARRLFKTPDVADAETLDL 296
Score = 145 bits (367), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 68/111 (61%), Positives = 85/111 (76%), Gaps = 7/111 (6%)
Query: 304 ELVADVAPSSIRES-------RKICIDASMSLYQFLIAVRSEGNQLMSVDGEPTSHLMGT 356
+++ D AP++I+E+ RK+ IDASMS+YQFLIAVRSEG L S DGE TSHLMG
Sbjct: 8 QVIGDTAPTAIKENEIKNYFGRKVAIDASMSIYQFLIAVRSEGAMLTSADGETTSHLMGI 67
Query: 357 FYRTIRLVEHGLKPIYVFDGKPPTLKSGELNKRMEKREDAQKALAKAQEQG 407
FYRTIR+V++G+KP+YVFDGKPP +K GEL KR EKRE+A K L A + G
Sbjct: 68 FYRTIRMVDNGIKPVYVFDGKPPDMKGGELTKRAEKREEASKQLVLATDAG 118
Score = 121 bits (303), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 52/74 (70%), Positives = 65/74 (87%)
Query: 232 FIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGWLYKEAREL 291
FIDLCI+LGCDYCD+I+GIG KRA ELI +HR IEK++EN+DTKKYTVPE W Y+EAR L
Sbjct: 223 FIDLCIMLGCDYCDTIKGIGAKRAKELIDKHRCIEKVIENLDTKKYTVPENWPYQEARRL 282
Query: 292 FRHPEIADPETIEL 305
F+ P++AD ET++L
Sbjct: 283 FKTPDVADAETLDL 296
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 38/62 (61%), Positives = 48/62 (77%)
Query: 1 MTLKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSSTTQGRLDSFFTIRREEKRK 60
+ LKW+ PDE+GLVK++CGDKNF E+RIR+GAKKL KA++ TQGRLDSFF + K
Sbjct: 294 LDLKWTQPDEEGLVKFMCGDKNFNEERIRSGAKKLCKAKTGQTQGRLDSFFKVLPSSKPS 353
Query: 61 AP 62
P
Sbjct: 354 TP 355
Score = 84.0 bits (206), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 36/51 (70%), Positives = 45/51 (88%)
Query: 409 LKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSTTTQGRLDSFFTI 459
LKW+ PDE+GLVK++CGDKNF E+RIR+GAKKL KA++ TQGRLDSFF +
Sbjct: 296 LKWTQPDEEGLVKFMCGDKNFNEERIRSGAKKLCKAKTGQTQGRLDSFFKV 346
>gi|328773336|gb|EGF83373.1| hypothetical protein BATDEDRAFT_22008 [Batrachochytrium
dendrobatidis JAM81]
Length = 388
Score = 229 bits (585), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 98/142 (69%), Positives = 122/142 (85%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVLE 120
APCEAEAQCAA+ KAGKVYA +EDMD LTFG+ +LLRH+TFSEA+K+P+ EF+ +KVLE
Sbjct: 156 APCEAEAQCAALAKAGKVYAAGSEDMDTLTFGAPVLLRHLTFSEAKKIPISEFNTQKVLE 215
Query: 121 GMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGW 180
G+ SH+EFIDLCILLGCDYCDSIRGIGP RA++L+KEHR+IE I+++ID KY VPE W
Sbjct: 216 GLNFSHDEFIDLCILLGCDYCDSIRGIGPHRAVQLMKEHRTIENIIKSIDKTKYKVPENW 275
Query: 181 LYKEARELFRHPEVADPETIEF 202
+KEAR+LF+ P+V DP T+E
Sbjct: 276 PFKEARQLFKEPDVLDPATVEL 297
Score = 130 bits (326), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 66/111 (59%), Positives = 82/111 (73%), Gaps = 8/111 (7%)
Query: 305 LVADVAPSSIRES-------RKICIDASMSLYQFLIAVR-SEGNQLMSVDGEPTSHLMGT 356
++ D AP++ +++ RK+ IDASMS+YQFLIAVR S+G QL + GE TSHLMG
Sbjct: 9 VICDNAPAATKQNDIKNYFGRKVAIDASMSIYQFLIAVRQSDGQQLTNEAGETTSHLMGM 68
Query: 357 FYRTIRLVEHGLKPIYVFDGKPPTLKSGELNKRMEKREDAQKALAKAQEQG 407
YRTIR+VE+G+KP YVFDGKPPTLKSGEL KR E+R +AQK A E G
Sbjct: 69 LYRTIRMVENGIKPAYVFDGKPPTLKSGELQKRGERRAEAQKEADTALETG 119
Score = 126 bits (317), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 74/178 (41%), Positives = 99/178 (55%), Gaps = 16/178 (8%)
Query: 232 FIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGWLYKEAREL 291
FIDLCILLGCDYCDSIRGIGP RA++L+KEHR+IE I+++ID KY VPE W +KEAR+L
Sbjct: 224 FIDLCILLGCDYCDSIRGIGPHRAVQLMKEHRTIENIIKSIDKTKYKVPENWPFKEARQL 283
Query: 292 FRHPEIADPETIELVADVAPSSIRESRKICIDASMSLYQFLIAVRSEGNQLMSVDGEPTS 351
F+ P++ DP T+EL L QFL+ + + E S
Sbjct: 284 FKEPDVLDPATVEL-------------NWTKPDEAGLLQFLVTEKGFSEDRVKKAAERLS 330
Query: 352 HLMGTFYRTIRLVEHGLKPIYVFDGKPPTLK-SGELNKRMEKREDAQKALAKAQEQGK 408
LMGT T ++ K I P TLK +K K ++A+K++A + K
Sbjct: 331 KLMGT--ATQGRLDGFFKAIPRPASDPLTLKRKAAESKTTPKGKNAKKSVAGGSSKSK 386
Score = 61.6 bits (148), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 25/49 (51%), Positives = 35/49 (71%)
Query: 409 LKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSTTTQGRLDSFF 457
L W+ PDE GL+++L +K F+EDR++ A++L K T TQGRLD FF
Sbjct: 297 LNWTKPDEAGLLQFLVTEKGFSEDRVKKAAERLSKLMGTATQGRLDGFF 345
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 24/49 (48%), Positives = 35/49 (71%)
Query: 3 LKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSSTTQGRLDSFF 51
L W+ PDE GL+++L +K F+EDR++ A++L K + TQGRLD FF
Sbjct: 297 LNWTKPDEAGLLQFLVTEKGFSEDRVKKAAERLSKLMGTATQGRLDGFF 345
>gi|317374903|sp|D3TQJ5.1|FEN1_GLOMM RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|289742451|gb|ADD19973.1| 5'-3' exonuclease [Glossina morsitans morsitans]
Length = 382
Score = 229 bits (584), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 107/142 (75%), Positives = 121/142 (85%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVLE 120
APCEAEAQCAA+VKAGKVYATATEDMDALTFGS ILLRH+TFSEARK+PV+EF KVL+
Sbjct: 155 APCEAEAQCAALVKAGKVYATATEDMDALTFGSGILLRHLTFSEARKMPVKEFSYAKVLD 214
Query: 121 GMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGW 180
G L+ +EFIDLCILLGCDYCD IRGIGPKRA EL+ ++ IE ILE ID KKYTVPE W
Sbjct: 215 GFGLTSQEFIDLCILLGCDYCDGIRGIGPKRATELMNSYKDIETILEKIDRKKYTVPEDW 274
Query: 181 LYKEARELFRHPEVADPETIEF 202
Y+ ARELF +PEVADP ++E
Sbjct: 275 NYQIARELFVNPEVADPSSLEL 296
Score = 155 bits (391), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 76/111 (68%), Positives = 89/111 (80%), Gaps = 7/111 (6%)
Query: 304 ELVADVAPSSIRES-------RKICIDASMSLYQFLIAVRSEGNQLMSVDGEPTSHLMGT 356
+L+AD+ P +I+ES RK+ IDASM LYQFLIAVR+EG QL +VDGE TSHLMG
Sbjct: 8 KLIADICPQAIKESDIKNYFGRKVAIDASMCLYQFLIAVRAEGAQLTNVDGETTSHLMGM 67
Query: 357 FYRTIRLVEHGLKPIYVFDGKPPTLKSGELNKRMEKREDAQKALAKAQEQG 407
FYRTIRL+E+G+KP+YVFDGKPP KSGEL KR E+REDAQKAL KA E G
Sbjct: 68 FYRTIRLLENGIKPVYVFDGKPPISKSGELAKRAERREDAQKALEKATEAG 118
Score = 119 bits (298), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 53/74 (71%), Positives = 61/74 (82%)
Query: 232 FIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGWLYKEAREL 291
FIDLCILLGCDYCD IRGIGPKRA EL+ ++ IE ILE ID KKYTVPE W Y+ AREL
Sbjct: 223 FIDLCILLGCDYCDGIRGIGPKRATELMNSYKDIETILEKIDRKKYTVPEDWNYQIAREL 282
Query: 292 FRHPEIADPETIEL 305
F +PE+ADP ++EL
Sbjct: 283 FVNPEVADPSSLEL 296
Score = 85.9 bits (211), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 36/53 (67%), Positives = 45/53 (84%)
Query: 1 MTLKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSSTTQGRLDSFFTI 53
+ LKW DPDEDGLV++ CGD+ F EDR+R+GAKK+LK +SS TQGRLDSFF +
Sbjct: 294 LELKWFDPDEDGLVRFFCGDRQFNEDRVRSGAKKILKCKSSQTQGRLDSFFKV 346
Score = 84.3 bits (207), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 35/51 (68%), Positives = 44/51 (86%)
Query: 409 LKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSTTTQGRLDSFFTI 459
LKW DPDEDGLV++ CGD+ F EDR+R+GAKK+LK +S+ TQGRLDSFF +
Sbjct: 296 LKWFDPDEDGLVRFFCGDRQFNEDRVRSGAKKILKCKSSQTQGRLDSFFKV 346
>gi|332376861|gb|AEE63570.1| unknown [Dendroctonus ponderosae]
Length = 380
Score = 228 bits (582), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 105/142 (73%), Positives = 122/142 (85%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVLE 120
APCEAEAQCAAMVKAGK+YATATEDMDALTFGS+I+LRH+TFSEARK+P+QE HL+ VL+
Sbjct: 155 APCEAEAQCAAMVKAGKIYATATEDMDALTFGSDIVLRHLTFSEARKMPIQEIHLKIVLQ 214
Query: 121 GMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGW 180
+ LS EFID CIL+GCDY DSIRGIGPK++IELIK HRSIEKILENID KY PE W
Sbjct: 215 ELNLSQTEFIDFCILMGCDYTDSIRGIGPKKSIELIKNHRSIEKILENIDKSKYPPPEDW 274
Query: 181 LYKEARELFRHPEVADPETIEF 202
Y+ AR LF PE++DP++IE
Sbjct: 275 NYEGARGLFVKPEISDPDSIEL 296
Score = 164 bits (415), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 79/111 (71%), Positives = 91/111 (81%), Gaps = 7/111 (6%)
Query: 304 ELVADVAPSSIRES-------RKICIDASMSLYQFLIAVRSEGNQLMSVDGEPTSHLMGT 356
+ +ADVAP I+E+ RK+ IDASMSLYQFLIAVRSEG QL + DGEPTSHL+GT
Sbjct: 8 KFLADVAPHCIKETDIKSYFGRKVAIDASMSLYQFLIAVRSEGAQLTTADGEPTSHLVGT 67
Query: 357 FYRTIRLVEHGLKPIYVFDGKPPTLKSGELNKRMEKREDAQKALAKAQEQG 407
FYRTIRL+EHG+KP+YVFDGKPP +K GELNKRMEKR +AQKAL KA E G
Sbjct: 68 FYRTIRLLEHGIKPVYVFDGKPPEMKGGELNKRMEKRAEAQKALDKAMEAG 118
Score = 119 bits (299), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 54/74 (72%), Positives = 61/74 (82%)
Query: 232 FIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGWLYKEAREL 291
FID CIL+GCDY DSIRGIGPK++IELIK HRSIEKILENID KY PE W Y+ AR L
Sbjct: 223 FIDFCILMGCDYTDSIRGIGPKKSIELIKNHRSIEKILENIDKSKYPPPEDWNYEGARGL 282
Query: 292 FRHPEIADPETIEL 305
F PEI+DP++IEL
Sbjct: 283 FVKPEISDPDSIEL 296
Score = 83.2 bits (204), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 34/51 (66%), Positives = 43/51 (84%)
Query: 409 LKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSTTTQGRLDSFFTI 459
LKW +PDE+G+VK+LCG + F+EDR+RNG KKL KAR T+TQ RLD FFT+
Sbjct: 296 LKWGEPDEEGMVKFLCGHRQFSEDRVRNGIKKLQKARGTSTQARLDGFFTV 346
Score = 82.0 bits (201), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 37/61 (60%), Positives = 47/61 (77%), Gaps = 2/61 (3%)
Query: 3 LKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSSTTQGRLDSFFTI--RREEKRK 60
LKW +PDE+G+VK+LCG + F+EDR+RNG KKL KAR ++TQ RLD FFT+ KRK
Sbjct: 296 LKWGEPDEEGMVKFLCGHRQFSEDRVRNGIKKLQKARGTSTQARLDGFFTVLGTTPAKRK 355
Query: 61 A 61
A
Sbjct: 356 A 356
>gi|320202935|ref|NP_001188509.1| flap endonuclease-1 [Bombyx mori]
gi|268044461|gb|ACY92094.1| flap endonuclease-1 [Bombyx mori]
Length = 380
Score = 228 bits (581), Expect = 6e-57, Method: Compositional matrix adjust.
Identities = 101/142 (71%), Positives = 123/142 (86%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVLE 120
APCEAEAQCAA+VK+GKV+A ATEDMDALTFG+ +LLRH+TFSEARK+PVQEFHL VL+
Sbjct: 155 APCEAEAQCAALVKSGKVFAAATEDMDALTFGAPVLLRHLTFSEARKMPVQEFHLNNVLQ 214
Query: 121 GMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGW 180
G+EL EFIDLCILLGCDYC SIRG+GPKRAI+LI++HR+++++L+NIDT+KY P W
Sbjct: 215 GLELKQNEFIDLCILLGCDYCGSIRGVGPKRAIDLIRQHRTLDEVLKNIDTEKYQPPTDW 274
Query: 181 LYKEARELFRHPEVADPETIEF 202
Y+ AR LF PEVADP+ IE
Sbjct: 275 DYERARSLFMEPEVADPKDIEL 296
Score = 141 bits (356), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 80/125 (64%), Positives = 96/125 (76%), Gaps = 7/125 (5%)
Query: 304 ELVADVAPSSIRE-------SRKICIDASMSLYQFLIAVRSEGNQLMSVDGEPTSHLMGT 356
+L+AD+AP +++E RKI IDASMSLYQFLIAVRSEG QL+SVDGE TSHLMGT
Sbjct: 8 KLIADIAPYAVKEMEIKNYFGRKIAIDASMSLYQFLIAVRSEGAQLVSVDGETTSHLMGT 67
Query: 357 FYRTIRLVEHGLKPIYVFDGKPPTLKSGELNKRMEKREDAQKALAKAQEQGKLKWSDPDE 416
FYRTIRLVE+G+KP+YVFDGKPP +K+ +LNKR E+RE+A+K L KA E G D
Sbjct: 68 FYRTIRLVENGIKPVYVFDGKPPDMKAHQLNKRAERREEAEKELQKATEAGDTASVDKFN 127
Query: 417 DGLVK 421
LVK
Sbjct: 128 RRLVK 132
Score = 116 bits (291), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 49/74 (66%), Positives = 63/74 (85%)
Query: 232 FIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGWLYKEAREL 291
FIDLCILLGCDYC SIRG+GPKRAI+LI++HR+++++L+NIDT+KY P W Y+ AR L
Sbjct: 223 FIDLCILLGCDYCGSIRGVGPKRAIDLIRQHRTLDEVLKNIDTEKYQPPTDWDYERARSL 282
Query: 292 FRHPEIADPETIEL 305
F PE+ADP+ IEL
Sbjct: 283 FMEPEVADPKDIEL 296
Score = 91.3 bits (225), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 41/61 (67%), Positives = 50/61 (81%), Gaps = 2/61 (3%)
Query: 3 LKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSSTTQGRLDSFFTIRR--EEKRK 60
LKW+DPDE+GLVK+LCGD+ F E+R+RNGAKKL+KAR+ TTQ RLD FFT+ KRK
Sbjct: 296 LKWTDPDEEGLVKFLCGDRQFNEERVRNGAKKLIKARTGTTQARLDGFFTLTTTPNSKRK 355
Query: 61 A 61
A
Sbjct: 356 A 356
Score = 90.5 bits (223), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 38/63 (60%), Positives = 50/63 (79%)
Query: 408 KLKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSTTTQGRLDSFFTIRREEKRKS 467
+LKW+DPDE+GLVK+LCGD+ F E+R+RNGAKKL+KAR+ TTQ RLD FFT+ K
Sbjct: 295 ELKWTDPDEEGLVKFLCGDRQFNEERVRNGAKKLIKARTGTTQARLDGFFTLTTTPNSKR 354
Query: 468 RCQ 470
+ +
Sbjct: 355 KAE 357
>gi|195123149|ref|XP_002006071.1| GI18754 [Drosophila mojavensis]
gi|317374891|sp|B4KNM1.1|FEN1_DROMO RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|193911139|gb|EDW10006.1| GI18754 [Drosophila mojavensis]
Length = 388
Score = 228 bits (581), Expect = 7e-57, Method: Compositional matrix adjust.
Identities = 107/142 (75%), Positives = 123/142 (86%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVLE 120
APCEAEAQCAA+VKAGKVYATATEDMDALTFGS LLR++T+SEARK+PV+EF +KVL+
Sbjct: 155 APCEAEAQCAALVKAGKVYATATEDMDALTFGSCKLLRYLTYSEARKMPVKEFSYDKVLQ 214
Query: 121 GMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGW 180
G+EL+ +EFIDLCIL+GCDYCDSI+GIGPKRAIELIK +R IE ILENIDT KY VPE W
Sbjct: 215 GLELTSKEFIDLCILMGCDYCDSIKGIGPKRAIELIKTYRDIETILENIDTSKYIVPENW 274
Query: 181 LYKEARELFRHPEVADPETIEF 202
Y+ ARELF PEV D TI+
Sbjct: 275 NYQRARELFVEPEVTDASTIDL 296
Score = 152 bits (385), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 73/111 (65%), Positives = 91/111 (81%), Gaps = 7/111 (6%)
Query: 304 ELVADVAPSSIRES-------RKICIDASMSLYQFLIAVRSEGNQLMSVDGEPTSHLMGT 356
+L+AD+AP +IRES RK+ IDASM LYQFLIAVRSEG QL +V+G+PTSHLMG
Sbjct: 8 KLIADLAPLAIRESEIKNFFGRKVAIDASMCLYQFLIAVRSEGAQLATVNGDPTSHLMGM 67
Query: 357 FYRTIRLVEHGLKPIYVFDGKPPTLKSGELNKRMEKREDAQKALAKAQEQG 407
FYRTIRL+++G+KP+YVFDGKPP LK+GEL KR E+RE+A+KAL A + G
Sbjct: 68 FYRTIRLLDNGIKPVYVFDGKPPDLKAGELAKRAERREEAEKALKVATDAG 118
Score = 123 bits (308), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 55/74 (74%), Positives = 61/74 (82%)
Query: 232 FIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGWLYKEAREL 291
FIDLCIL+GCDYCDSI+GIGPKRAIELIK +R IE ILENIDT KY VPE W Y+ AREL
Sbjct: 223 FIDLCILMGCDYCDSIKGIGPKRAIELIKTYRDIETILENIDTSKYIVPENWNYQRAREL 282
Query: 292 FRHPEIADPETIEL 305
F PE+ D TI+L
Sbjct: 283 FVEPEVTDASTIDL 296
Score = 82.4 bits (202), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 40/78 (51%), Positives = 53/78 (67%), Gaps = 7/78 (8%)
Query: 1 MTLKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSSTTQGRLDSFFTIRREEKRK 60
+ LKW+ PDEDGLV++LCGD+ F E+R+RNGA+KLLK++ S TQ RLDSFF +
Sbjct: 294 IDLKWTAPDEDGLVQFLCGDRQFNEERVRNGARKLLKSKQSQTQVRLDSFF-------KA 346
Query: 61 APCEAEAQCAAMVKAGKV 78
P A AA KA ++
Sbjct: 347 LPSSPNATAAAKRKAEEI 364
Score = 79.7 bits (195), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 33/49 (67%), Positives = 43/49 (87%)
Query: 409 LKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSTTTQGRLDSFF 457
LKW+ PDEDGLV++LCGD+ F E+R+RNGA+KLLK++ + TQ RLDSFF
Sbjct: 296 LKWTAPDEDGLVQFLCGDRQFNEERVRNGARKLLKSKQSQTQVRLDSFF 344
>gi|195025439|ref|XP_001986060.1| GH21157 [Drosophila grimshawi]
gi|317374890|sp|B4J6M4.1|FEN1_DROGR RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|193902060|gb|EDW00927.1| GH21157 [Drosophila grimshawi]
Length = 388
Score = 227 bits (579), Expect = 9e-57, Method: Compositional matrix adjust.
Identities = 106/142 (74%), Positives = 123/142 (86%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVLE 120
APCEAEAQCAA+VKAGKVYATATEDMDALTFGS LLR++T+SEARK+PV+EF +KVL+
Sbjct: 155 APCEAEAQCAALVKAGKVYATATEDMDALTFGSCKLLRYLTYSEARKMPVKEFSYDKVLQ 214
Query: 121 GMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGW 180
G+EL+ +EFIDLCIL+GCDYC+SIRG+GPKRAIELIK +R IE ILENIDT KY VPE W
Sbjct: 215 GLELTSKEFIDLCILMGCDYCESIRGVGPKRAIELIKSYRDIETILENIDTNKYAVPENW 274
Query: 181 LYKEARELFRHPEVADPETIEF 202
YK ARELF P+V D TI+
Sbjct: 275 NYKRARELFIEPDVTDASTIDL 296
Score = 152 bits (383), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 72/111 (64%), Positives = 90/111 (81%), Gaps = 7/111 (6%)
Query: 304 ELVADVAPSSIRES-------RKICIDASMSLYQFLIAVRSEGNQLMSVDGEPTSHLMGT 356
+L+AD+AP +IRES RK+ IDASM LYQFLIAVRSEG QL +V+G+PTSHLMG
Sbjct: 8 KLIADLAPLAIRESEIKNFFGRKVAIDASMCLYQFLIAVRSEGAQLAAVNGDPTSHLMGM 67
Query: 357 FYRTIRLVEHGLKPIYVFDGKPPTLKSGELNKRMEKREDAQKALAKAQEQG 407
FYRTIRL+++G+KP+YVFDG PP +KSGEL KR E+R++A+KAL A E G
Sbjct: 68 FYRTIRLLDNGIKPVYVFDGAPPDMKSGELAKRAERRDEAEKALKAATEAG 118
Score = 122 bits (307), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 54/74 (72%), Positives = 61/74 (82%)
Query: 232 FIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGWLYKEAREL 291
FIDLCIL+GCDYC+SIRG+GPKRAIELIK +R IE ILENIDT KY VPE W YK AREL
Sbjct: 223 FIDLCILMGCDYCESIRGVGPKRAIELIKSYRDIETILENIDTNKYAVPENWNYKRAREL 282
Query: 292 FRHPEIADPETIEL 305
F P++ D TI+L
Sbjct: 283 FIEPDVTDASTIDL 296
Score = 84.3 bits (207), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 41/75 (54%), Positives = 52/75 (69%), Gaps = 7/75 (9%)
Query: 1 MTLKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSSTTQGRLDSFFTIRREEKRK 60
+ LKW+DPDEDGLV++LCGD+ F E+R+RNGAKKLLK++ + TQ RLDSFF +
Sbjct: 294 IDLKWTDPDEDGLVQFLCGDRQFNEERVRNGAKKLLKSKQAQTQVRLDSFF-------KT 346
Query: 61 APCEAEAQCAAMVKA 75
P A AA KA
Sbjct: 347 LPSSPNAIAAAKRKA 361
Score = 83.2 bits (204), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 35/49 (71%), Positives = 43/49 (87%)
Query: 409 LKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSTTTQGRLDSFF 457
LKW+DPDEDGLV++LCGD+ F E+R+RNGAKKLLK++ TQ RLDSFF
Sbjct: 296 LKWTDPDEDGLVQFLCGDRQFNEERVRNGAKKLLKSKQAQTQVRLDSFF 344
>gi|156553807|ref|XP_001603401.1| PREDICTED: flap endonuclease 1-like [Nasonia vitripennis]
Length = 381
Score = 227 bits (579), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 103/142 (72%), Positives = 123/142 (86%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVLE 120
APCEAEAQCAAMVK+GKVYATATEDMDALTFG N+LLR +TFSEARK+P+QE +KVL
Sbjct: 155 APCEAEAQCAAMVKSGKVYATATEDMDALTFGCNVLLRRLTFSEARKMPIQEIQYDKVLN 214
Query: 121 GMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGW 180
G+ L+ +EFIDLCI+LGCDY SI+G+GPKRAIELIK H+S+EKILEN+DTKK+ VPE W
Sbjct: 215 GLGLTRDEFIDLCIMLGCDYTTSIKGVGPKRAIELIKNHKSLEKILENLDTKKFPVPEDW 274
Query: 181 LYKEARELFRHPEVADPETIEF 202
YK+AR+LF PEV DPE ++
Sbjct: 275 NYKDARQLFIEPEVKDPEEVDL 296
Score = 162 bits (409), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 84/125 (67%), Positives = 96/125 (76%), Gaps = 7/125 (5%)
Query: 304 ELVADVAPSSIRE-------SRKICIDASMSLYQFLIAVRSEGNQLMSVDGEPTSHLMGT 356
+L+ADVAP +I+E RKI IDASM LYQFLIAVRSEG QL SVDGE TSHLMGT
Sbjct: 8 KLIADVAPEAIKECELKHLFGRKIAIDASMCLYQFLIAVRSEGAQLTSVDGETTSHLMGT 67
Query: 357 FYRTIRLVEHGLKPIYVFDGKPPTLKSGELNKRMEKREDAQKALAKAQEQGKLKWSDPDE 416
FYRTIRLVE+G+KP+YVFDGKPPTLK GEL KR E+RE+AQK L A+E G ++ D
Sbjct: 68 FYRTIRLVENGIKPVYVFDGKPPTLKGGELAKRAERREEAQKQLQAAEEAGNVEDVDKFN 127
Query: 417 DGLVK 421
LVK
Sbjct: 128 RRLVK 132
Score = 122 bits (305), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 56/93 (60%), Positives = 70/93 (75%), Gaps = 5/93 (5%)
Query: 213 YCDSIRGIGPKRAIELLYSFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENI 272
Y + G+G R FIDLCI+LGCDY SI+G+GPKRAIELIK H+S+EKILEN+
Sbjct: 209 YDKVLNGLGLTRD-----EFIDLCIMLGCDYTTSIKGVGPKRAIELIKNHKSLEKILENL 263
Query: 273 DTKKYTVPEGWLYKEARELFRHPEIADPETIEL 305
DTKK+ VPE W YK+AR+LF PE+ DPE ++L
Sbjct: 264 DTKKFPVPEDWNYKDARQLFIEPEVKDPEEVDL 296
Score = 94.4 bits (233), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 42/59 (71%), Positives = 49/59 (83%)
Query: 401 AKAQEQGKLKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSTTTQGRLDSFFTI 459
K E+ LKW+DPDE+GLVK+LCGDK F EDR+RNGAKKLLKAR T TQGR+DSFF +
Sbjct: 288 VKDPEEVDLKWNDPDEEGLVKFLCGDKQFNEDRVRNGAKKLLKARHTGTQGRIDSFFKV 346
Score = 92.0 bits (227), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 39/53 (73%), Positives = 47/53 (88%)
Query: 1 MTLKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSSTTQGRLDSFFTI 53
+ LKW+DPDE+GLVK+LCGDK F EDR+RNGAKKLLKAR + TQGR+DSFF +
Sbjct: 294 VDLKWNDPDEEGLVKFLCGDKQFNEDRVRNGAKKLLKARHTGTQGRIDSFFKV 346
>gi|198477405|ref|XP_002136633.1| GA27689 [Drosophila pseudoobscura pseudoobscura]
gi|317374893|sp|B5DUR8.1|FEN1_DROPS RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|198142925|gb|EDY71637.1| GA27689 [Drosophila pseudoobscura pseudoobscura]
Length = 386
Score = 226 bits (577), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 105/142 (73%), Positives = 123/142 (86%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVLE 120
APCEAEAQCAA+VKAGKVYATATEDMDALTFGS LLR++T+SEARK+PV+EF +K+LE
Sbjct: 155 APCEAEAQCAALVKAGKVYATATEDMDALTFGSTKLLRYLTYSEARKMPVKEFSYDKLLE 214
Query: 121 GMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGW 180
G+E+++ EFIDLCILLGCDYC+SI+GIGPKRAIELI +R IE IL+N+DT KYTVPE W
Sbjct: 215 GLEVNNREFIDLCILLGCDYCESIKGIGPKRAIELINNYRDIETILDNLDTSKYTVPENW 274
Query: 181 LYKEARELFRHPEVADPETIEF 202
YK ARELF PEVAD I+
Sbjct: 275 NYKVARELFIEPEVADASAIDL 296
Score = 155 bits (392), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 74/111 (66%), Positives = 91/111 (81%), Gaps = 7/111 (6%)
Query: 304 ELVADVAPSSIRES-------RKICIDASMSLYQFLIAVRSEGNQLMSVDGEPTSHLMGT 356
+L+AD+AP +IRES RK+ IDASM LYQFLIAVRSEG QL +V+G+PTSHLMG
Sbjct: 8 KLIADLAPQAIRESEMKHFFGRKVAIDASMCLYQFLIAVRSEGAQLATVNGDPTSHLMGM 67
Query: 357 FYRTIRLVEHGLKPIYVFDGKPPTLKSGELNKRMEKREDAQKALAKAQEQG 407
FYRTIRL+++G+KP+YVFDGKPP LKSGEL KR E+RE+A+KAL A + G
Sbjct: 68 FYRTIRLLDNGIKPVYVFDGKPPDLKSGELAKRAERREEAEKALKAATDAG 118
Score = 120 bits (302), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 54/74 (72%), Positives = 61/74 (82%)
Query: 232 FIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGWLYKEAREL 291
FIDLCILLGCDYC+SI+GIGPKRAIELI +R IE IL+N+DT KYTVPE W YK AREL
Sbjct: 223 FIDLCILLGCDYCESIKGIGPKRAIELINNYRDIETILDNLDTSKYTVPENWNYKVAREL 282
Query: 292 FRHPEIADPETIEL 305
F PE+AD I+L
Sbjct: 283 FIEPEVADASAIDL 296
Score = 80.9 bits (198), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 39/75 (52%), Positives = 52/75 (69%), Gaps = 7/75 (9%)
Query: 1 MTLKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSSTTQGRLDSFFTIRREEKRK 60
+ LKW++PDE+GLVK+LCGD+ F+E+R+RNGAKKL K++ + TQ RLDSFF +
Sbjct: 294 IDLKWTEPDEEGLVKFLCGDRQFSEERVRNGAKKLFKSKHAQTQVRLDSFF-------KT 346
Query: 61 APCEAEAQCAAMVKA 75
P A AA KA
Sbjct: 347 LPSTPNAVNAAKRKA 361
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 33/49 (67%), Positives = 43/49 (87%)
Query: 409 LKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSTTTQGRLDSFF 457
LKW++PDE+GLVK+LCGD+ F+E+R+RNGAKKL K++ TQ RLDSFF
Sbjct: 296 LKWTEPDEEGLVKFLCGDRQFSEERVRNGAKKLFKSKHAQTQVRLDSFF 344
>gi|317376168|sp|B1H158.1|FEN1_XENTR RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|169642201|gb|AAI60482.1| flap structure specific endonuclease 1 [Xenopus (Silurana)
tropicalis]
Length = 382
Score = 226 bits (577), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 100/142 (70%), Positives = 125/142 (88%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVLE 120
APCEAEA CAA+VKAGKVYA ATEDMDALTFG+ +LLRH+T SEA+KLP+QEFHL +V++
Sbjct: 155 APCEAEATCAALVKAGKVYAAATEDMDALTFGTPVLLRHLTASEAKKLPIQEFHLNRVMQ 214
Query: 121 GMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGW 180
M +SHE+F+DLCILLG DYC++IRGIGPKRAI+LI++H+SIE+I++NID KKY +PE W
Sbjct: 215 DMGVSHEQFVDLCILLGSDYCETIRGIGPKRAIDLIRQHKSIEEIVDNIDLKKYPIPENW 274
Query: 181 LYKEARELFRHPEVADPETIEF 202
L+KEAR+LF PEV D E+ E
Sbjct: 275 LHKEARQLFLEPEVVDTESTEL 296
Score = 142 bits (357), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 65/104 (62%), Positives = 83/104 (79%), Gaps = 7/104 (6%)
Query: 304 ELVADVAPSSIRE-------SRKICIDASMSLYQFLIAVRSEGNQLMSVDGEPTSHLMGT 356
+L+ADVAP++I+E RK+ +DASM +YQFLIAVR +GN L + DGE TSHLMG
Sbjct: 8 KLIADVAPAAIKEHDIKSYFGRKVAVDASMCIYQFLIAVRQDGNMLQNEDGETTSHLMGM 67
Query: 357 FYRTIRLVEHGLKPIYVFDGKPPTLKSGELNKRMEKREDAQKAL 400
FYRTIR++EHG+KP+YVFDGKPP +KSGEL KR E+R +A+K L
Sbjct: 68 FYRTIRMIEHGIKPVYVFDGKPPQMKSGELAKRSERRAEAEKLL 111
Score = 119 bits (298), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 50/74 (67%), Positives = 65/74 (87%)
Query: 232 FIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGWLYKEAREL 291
F+DLCILLG DYC++IRGIGPKRAI+LI++H+SIE+I++NID KKY +PE WL+KEAR+L
Sbjct: 223 FVDLCILLGSDYCETIRGIGPKRAIDLIRQHKSIEEIVDNIDLKKYPIPENWLHKEARQL 282
Query: 292 FRHPEIADPETIEL 305
F PE+ D E+ EL
Sbjct: 283 FLEPEVVDTESTEL 296
Score = 80.1 bits (196), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 34/55 (61%), Positives = 43/55 (78%)
Query: 405 EQGKLKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSTTTQGRLDSFFTI 459
E +LKW +PDE+GLV ++C +K F+EDRIRNGAKKL K R +TQGRLD FF +
Sbjct: 292 ESTELKWIEPDEEGLVAFMCAEKQFSEDRIRNGAKKLAKNRQGSTQGRLDDFFKV 346
Score = 79.3 bits (194), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 33/51 (64%), Positives = 41/51 (80%)
Query: 3 LKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSSTTQGRLDSFFTI 53
LKW +PDE+GLV ++C +K F+EDRIRNGAKKL K R +TQGRLD FF +
Sbjct: 296 LKWIEPDEEGLVAFMCAEKQFSEDRIRNGAKKLAKNRQGSTQGRLDDFFKV 346
>gi|62859561|ref|NP_001017005.1| flap endonuclease 1 [Xenopus (Silurana) tropicalis]
Length = 382
Score = 226 bits (576), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 100/142 (70%), Positives = 125/142 (88%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVLE 120
APCEAEA CAA+VKAGKVYA ATEDMDALTFG+ +LLRH+T SEA+KLP+QEFHL +V++
Sbjct: 155 APCEAEATCAALVKAGKVYAAATEDMDALTFGTPVLLRHLTASEAKKLPIQEFHLNRVMQ 214
Query: 121 GMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGW 180
M +SHE+F+DLCILLG DYC++IRGIGPKRAI+LI++H+SIE+I++NID KKY +PE W
Sbjct: 215 DMGVSHEQFVDLCILLGSDYCETIRGIGPKRAIDLIRQHKSIEEIVDNIDLKKYPIPENW 274
Query: 181 LYKEARELFRHPEVADPETIEF 202
L+KEAR+LF PEV D E+ E
Sbjct: 275 LHKEARQLFLEPEVVDTESTEL 296
Score = 142 bits (357), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 65/104 (62%), Positives = 83/104 (79%), Gaps = 7/104 (6%)
Query: 304 ELVADVAPSSIRE-------SRKICIDASMSLYQFLIAVRSEGNQLMSVDGEPTSHLMGT 356
+L+ADVAP++I+E RK+ +DASM +YQFLIAVR +GN L + DGE TSHLMG
Sbjct: 8 KLIADVAPAAIKEHDIKSYFGRKVAVDASMCIYQFLIAVRQDGNMLQNEDGETTSHLMGM 67
Query: 357 FYRTIRLVEHGLKPIYVFDGKPPTLKSGELNKRMEKREDAQKAL 400
FYRTIR++EHG+KP+YVFDGKPP +KSGEL KR E+R +A+K L
Sbjct: 68 FYRTIRMIEHGIKPVYVFDGKPPQMKSGELAKRSERRAEAEKLL 111
Score = 119 bits (298), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 50/74 (67%), Positives = 65/74 (87%)
Query: 232 FIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGWLYKEAREL 291
F+DLCILLG DYC++IRGIGPKRAI+LI++H+SIE+I++NID KKY +PE WL+KEAR+L
Sbjct: 223 FVDLCILLGSDYCETIRGIGPKRAIDLIRQHKSIEEIVDNIDLKKYPIPENWLHKEARQL 282
Query: 292 FRHPEIADPETIEL 305
F PE+ D E+ EL
Sbjct: 283 FLEPEVVDTESTEL 296
Score = 79.3 bits (194), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 34/55 (61%), Positives = 43/55 (78%)
Query: 405 EQGKLKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSTTTQGRLDSFFTI 459
E +LKW +PDE+GLV ++C +K F+EDRIRNGAKKL K R +TQGRLD FF +
Sbjct: 292 ESTELKWIEPDEEGLVAFMCAEKQFSEDRIRNGAKKLSKNRQGSTQGRLDDFFKV 346
Score = 79.0 bits (193), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 33/51 (64%), Positives = 41/51 (80%)
Query: 3 LKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSSTTQGRLDSFFTI 53
LKW +PDE+GLV ++C +K F+EDRIRNGAKKL K R +TQGRLD FF +
Sbjct: 296 LKWIEPDEEGLVAFMCAEKQFSEDRIRNGAKKLSKNRQGSTQGRLDDFFKV 346
>gi|195431204|ref|XP_002063637.1| GK21315 [Drosophila willistoni]
gi|317374897|sp|B4MR84.1|FEN1_DROWI RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|194159722|gb|EDW74623.1| GK21315 [Drosophila willistoni]
Length = 388
Score = 226 bits (576), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 106/142 (74%), Positives = 123/142 (86%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVLE 120
APCEAEAQCAA+VKAGKVYATATEDMDALTFGS+ LLR++T+SEARK+PV+EF EK+L+
Sbjct: 155 APCEAEAQCAALVKAGKVYATATEDMDALTFGSSKLLRYLTYSEARKMPVKEFTYEKLLQ 214
Query: 121 GMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGW 180
G+EL+ EFIDLCILLGCDYC+SI+GIGPKRAIELI +R IE IL+N+DT KYTVPE W
Sbjct: 215 GLELNQREFIDLCILLGCDYCESIKGIGPKRAIELINSYRDIETILDNLDTSKYTVPENW 274
Query: 181 LYKEARELFRHPEVADPETIEF 202
YK ARELF PEVAD I+
Sbjct: 275 NYKVARELFIEPEVADASAIDL 296
Score = 156 bits (394), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 75/111 (67%), Positives = 91/111 (81%), Gaps = 7/111 (6%)
Query: 304 ELVADVAPSSIRES-------RKICIDASMSLYQFLIAVRSEGNQLMSVDGEPTSHLMGT 356
+L+AD+AP +IRES RK+ IDASM LYQFLIAVRSEG QL +V+G+PTSHLMG
Sbjct: 8 KLIADLAPQAIRESEIKNFFGRKVAIDASMCLYQFLIAVRSEGAQLATVNGDPTSHLMGM 67
Query: 357 FYRTIRLVEHGLKPIYVFDGKPPTLKSGELNKRMEKREDAQKALAKAQEQG 407
FYRTIRL+++G+KP+YVFDGKPP LKSGEL KR E+RE+A+KAL A E G
Sbjct: 68 FYRTIRLLDNGIKPVYVFDGKPPDLKSGELAKRAERREEAEKALKAATEAG 118
Score = 120 bits (300), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 54/74 (72%), Positives = 61/74 (82%)
Query: 232 FIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGWLYKEAREL 291
FIDLCILLGCDYC+SI+GIGPKRAIELI +R IE IL+N+DT KYTVPE W YK AREL
Sbjct: 223 FIDLCILLGCDYCESIKGIGPKRAIELINSYRDIETILDNLDTSKYTVPENWNYKVAREL 282
Query: 292 FRHPEIADPETIEL 305
F PE+AD I+L
Sbjct: 283 FIEPEVADASAIDL 296
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 32/51 (62%), Positives = 45/51 (88%)
Query: 1 MTLKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSSTTQGRLDSFF 51
+ LKW++PDE+GLVK+LCG++ F+E+R+R GAKKLLK++ + TQ RLDSFF
Sbjct: 294 IDLKWTEPDEEGLVKFLCGERQFSEERVRGGAKKLLKSKKAQTQVRLDSFF 344
Score = 63.5 bits (153), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 32/49 (65%), Positives = 43/49 (87%)
Query: 409 LKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSTTTQGRLDSFF 457
LKW++PDE+GLVK+LCG++ F+E+R+R GAKKLLK++ TQ RLDSFF
Sbjct: 296 LKWTEPDEEGLVKFLCGERQFSEERVRGGAKKLLKSKKAQTQVRLDSFF 344
>gi|195155221|ref|XP_002018504.1| GL16728 [Drosophila persimilis]
gi|317374892|sp|B4GIM3.1|FEN1_DROPE RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|194114300|gb|EDW36343.1| GL16728 [Drosophila persimilis]
Length = 386
Score = 226 bits (576), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 105/142 (73%), Positives = 123/142 (86%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVLE 120
APCEAEAQCAA+VKAGKVYATATEDMDALTFGS LLR++T+SEARK+PV+EF +K+LE
Sbjct: 155 APCEAEAQCAALVKAGKVYATATEDMDALTFGSTKLLRYLTYSEARKMPVKEFSYDKLLE 214
Query: 121 GMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGW 180
G+E+++ EFIDLCILLGCDYC+SI+GIGPKRAIELI +R IE IL+N+DT KYTVPE W
Sbjct: 215 GLEVNNREFIDLCILLGCDYCESIKGIGPKRAIELINNYRDIETILDNLDTSKYTVPENW 274
Query: 181 LYKEARELFRHPEVADPETIEF 202
YK ARELF PEVAD I+
Sbjct: 275 NYKVARELFIEPEVADASAIDL 296
Score = 155 bits (391), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 74/111 (66%), Positives = 91/111 (81%), Gaps = 7/111 (6%)
Query: 304 ELVADVAPSSIRES-------RKICIDASMSLYQFLIAVRSEGNQLMSVDGEPTSHLMGT 356
+L+AD+AP +IRES RK+ IDASM LYQFLIAVRSEG QL +V+G+PTSHLMG
Sbjct: 8 KLIADLAPQAIRESEMKHFFGRKVAIDASMCLYQFLIAVRSEGAQLATVNGDPTSHLMGM 67
Query: 357 FYRTIRLVEHGLKPIYVFDGKPPTLKSGELNKRMEKREDAQKALAKAQEQG 407
FYRTIRL+++G+KP+YVFDGKPP LKSGEL KR E+RE+A+KAL A + G
Sbjct: 68 FYRTIRLLDNGIKPVYVFDGKPPDLKSGELAKRAERREEAEKALKAATDAG 118
Score = 120 bits (302), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 54/74 (72%), Positives = 61/74 (82%)
Query: 232 FIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGWLYKEAREL 291
FIDLCILLGCDYC+SI+GIGPKRAIELI +R IE IL+N+DT KYTVPE W YK AREL
Sbjct: 223 FIDLCILLGCDYCESIKGIGPKRAIELINNYRDIETILDNLDTSKYTVPENWNYKVAREL 282
Query: 292 FRHPEIADPETIEL 305
F PE+AD I+L
Sbjct: 283 FIEPEVADASAIDL 296
Score = 82.4 bits (202), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 34/51 (66%), Positives = 46/51 (90%)
Query: 1 MTLKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSSTTQGRLDSFF 51
+ LKW++PDE+GLVK+LCGD+ F+E+R+RNGAKKLLK++ + TQ RLDSFF
Sbjct: 294 IDLKWTEPDEEGLVKFLCGDRQFSEERVRNGAKKLLKSKHAQTQVRLDSFF 344
Score = 81.6 bits (200), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 34/49 (69%), Positives = 44/49 (89%)
Query: 409 LKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSTTTQGRLDSFF 457
LKW++PDE+GLVK+LCGD+ F+E+R+RNGAKKLLK++ TQ RLDSFF
Sbjct: 296 LKWTEPDEEGLVKFLCGDRQFSEERVRNGAKKLLKSKHAQTQVRLDSFF 344
>gi|405953608|gb|EKC21238.1| Flap endonuclease 1-A [Crassostrea gigas]
Length = 376
Score = 226 bits (576), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 101/142 (71%), Positives = 128/142 (90%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVLE 120
AP EAEAQCAA+VKAGKVYAT TEDMDALTFG+ +LLR++T +EARKLP++E++ +VLE
Sbjct: 155 APGEAEAQCAALVKAGKVYATGTEDMDALTFGTTVLLRNLTVAEARKLPIKEYYYNRVLE 214
Query: 121 GMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGW 180
+ L+ +EFIDLCILLGCDYCDSIRGIGPKRAI+LIK+H++I++IL+++D+KKYTVPE W
Sbjct: 215 ELGLTKDEFIDLCILLGCDYCDSIRGIGPKRAIDLIKQHKTIDEILKHLDSKKYTVPEDW 274
Query: 181 LYKEARELFRHPEVADPETIEF 202
+YKEAR LF+ PEVADPE +E
Sbjct: 275 MYKEARRLFQEPEVADPEELEL 296
Score = 147 bits (371), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 72/125 (57%), Positives = 94/125 (75%), Gaps = 14/125 (11%)
Query: 305 LVADVAPSSIRES-------RKICIDASMSLYQFLIAVRSEGNQLMSVDGEPTSHLMGTF 357
L+ D APS+++E+ RK+ +DASM +YQFLIAVR +G+ LM+ DGE TSHLMG F
Sbjct: 9 LLGDYAPSAMKENEFKNYFGRKVAVDASMCIYQFLIAVRQDGSNLMNEDGETTSHLMGMF 68
Query: 358 YRTIRLVEHGLKPIYVFDGKPPTLKSGELNKRMEKREDAQKALAKAQEQGKLKWSDPDED 417
YRTIR+VE+G+KP+YVFDGKPP +KSGEL KR E+RE+AQK L KA+E G DE+
Sbjct: 69 YRTIRMVENGIKPVYVFDGKPPDMKSGELAKRKERREEAQKQLEKAEEAG-------DEE 121
Query: 418 GLVKY 422
+ K+
Sbjct: 122 NIEKF 126
Score = 131 bits (330), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 56/74 (75%), Positives = 70/74 (94%)
Query: 232 FIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGWLYKEAREL 291
FIDLCILLGCDYCDSIRGIGPKRAI+LIK+H++I++IL+++D+KKYTVPE W+YKEAR L
Sbjct: 223 FIDLCILLGCDYCDSIRGIGPKRAIDLIKQHKTIDEILKHLDSKKYTVPEDWMYKEARRL 282
Query: 292 FRHPEIADPETIEL 305
F+ PE+ADPE +EL
Sbjct: 283 FQEPEVADPEELEL 296
Score = 72.8 bits (177), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 31/48 (64%), Positives = 39/48 (81%)
Query: 1 MTLKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSSTTQGRLD 48
+ LKWS+PDE+GL+ ++ KNF+EDRIRNG KKL KA+ TTQGRLD
Sbjct: 294 LELKWSEPDEEGLIDFMVTQKNFSEDRIRNGMKKLQKAKQGTTQGRLD 341
Score = 72.8 bits (177), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 32/50 (64%), Positives = 41/50 (82%)
Query: 405 EQGKLKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSTTTQGRLD 454
E+ +LKWS+PDE+GL+ ++ KNF+EDRIRNG KKL KA+ TTQGRLD
Sbjct: 292 EELELKWSEPDEEGLIDFMVTQKNFSEDRIRNGMKKLQKAKQGTTQGRLD 341
>gi|198417766|ref|XP_002129714.1| PREDICTED: similar to predicted protein [Ciona intestinalis]
Length = 380
Score = 225 bits (574), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 102/142 (71%), Positives = 127/142 (89%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVLE 120
AP EAEAQCA++VK+GKVYATATEDMDALTF S+ LLRH+TFSEARK+P+QEF EKVLE
Sbjct: 155 APTEAEAQCASLVKSGKVYATATEDMDALTFHSSRLLRHLTFSEARKMPIQEFVYEKVLE 214
Query: 121 GMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGW 180
ME++HE+F+DLCILLGCDYC+ IRG+GPKRA +LIK++RSI++IL+NID KKYTVP+GW
Sbjct: 215 EMEMTHEQFVDLCILLGCDYCEHIRGVGPKRAYDLIKQYRSIDEILKNIDLKKYTVPDGW 274
Query: 181 LYKEARELFRHPEVADPETIEF 202
+YK+AR+LF P+VA E +E
Sbjct: 275 VYKDARQLFLAPDVAASEDVEL 296
Score = 143 bits (361), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 67/111 (60%), Positives = 88/111 (79%), Gaps = 7/111 (6%)
Query: 304 ELVADVAPSSIRES-------RKICIDASMSLYQFLIAVRSEGNQLMSVDGEPTSHLMGT 356
+L+ D APS+++E+ RK+ IDASM++YQFLIA+R +GNQL + DGE TSH+ G
Sbjct: 8 KLICDKAPSAVKENEIKNYFGRKVAIDASMAVYQFLIAIRQDGNQLTNEDGEVTSHIAGL 67
Query: 357 FYRTIRLVEHGLKPIYVFDGKPPTLKSGELNKRMEKREDAQKALAKAQEQG 407
FYRTIRL+ +G+KP++VFDGKPP +KSGEL KR E+RE A+K LAKAQE G
Sbjct: 68 FYRTIRLLGNGIKPVFVFDGKPPQMKSGELAKRAERREQAEKELAKAQESG 118
Score = 119 bits (297), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 50/74 (67%), Positives = 66/74 (89%)
Query: 232 FIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGWLYKEAREL 291
F+DLCILLGCDYC+ IRG+GPKRA +LIK++RSI++IL+NID KKYTVP+GW+YK+AR+L
Sbjct: 223 FVDLCILLGCDYCEHIRGVGPKRAYDLIKQYRSIDEILKNIDLKKYTVPDGWVYKDARQL 282
Query: 292 FRHPEIADPETIEL 305
F P++A E +EL
Sbjct: 283 FLAPDVAASEDVEL 296
Score = 75.9 bits (185), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 35/76 (46%), Positives = 53/76 (69%), Gaps = 4/76 (5%)
Query: 403 AQEQGKLKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSTTTQGRLDSFFTI--- 459
A E +LKW+DPDE+G+VK++ +K F EDR+R+G KK+L+ R +TQGRLD FF +
Sbjct: 290 ASEDVELKWNDPDEEGIVKFMVEEKGFNEDRVRSGIKKILQNRQKSTQGRLDDFFKVLPS 349
Query: 460 -RREEKRKSRCQYQCQ 474
+ +KRKS + + +
Sbjct: 350 TPKTKKRKSDTKIKSE 365
Score = 74.7 bits (182), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 33/72 (45%), Positives = 52/72 (72%), Gaps = 4/72 (5%)
Query: 3 LKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSSTTQGRLDSFFTI----RREEK 58
LKW+DPDE+G+VK++ +K F EDR+R+G KK+L+ R +TQGRLD FF + + +K
Sbjct: 296 LKWNDPDEEGIVKFMVEEKGFNEDRVRSGIKKILQNRQKSTQGRLDDFFKVLPSTPKTKK 355
Query: 59 RKAPCEAEAQCA 70
RK+ + +++ A
Sbjct: 356 RKSDTKIKSESA 367
>gi|195382111|ref|XP_002049775.1| GJ21778 [Drosophila virilis]
gi|317374896|sp|B4LM90.1|FEN1_DROVI RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|194144572|gb|EDW60968.1| GJ21778 [Drosophila virilis]
Length = 386
Score = 225 bits (574), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 105/142 (73%), Positives = 123/142 (86%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVLE 120
APCEAEAQCAA+VKAGKVYATATEDMDALTFGS LLR++T+SEARK+PV+EF +KVL+
Sbjct: 155 APCEAEAQCAALVKAGKVYATATEDMDALTFGSCKLLRYLTYSEARKMPVKEFSYDKVLQ 214
Query: 121 GMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGW 180
G+EL+ +EFIDLCIL+GCDYC+SI+G+GPKRAIELIK +R IE ILENIDT KY VPE W
Sbjct: 215 GLELTSKEFIDLCILMGCDYCESIKGVGPKRAIELIKSYRDIETILENIDTSKYPVPENW 274
Query: 181 LYKEARELFRHPEVADPETIEF 202
YK ARELF P+VAD I+
Sbjct: 275 NYKRARELFIEPDVADASAIDL 296
Score = 155 bits (391), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 74/111 (66%), Positives = 91/111 (81%), Gaps = 7/111 (6%)
Query: 304 ELVADVAPSSIRES-------RKICIDASMSLYQFLIAVRSEGNQLMSVDGEPTSHLMGT 356
+L+AD+AP +IRES RK+ IDASM LYQFLIAVRSEG QL +V+G+PTSHLMG
Sbjct: 8 KLIADLAPQAIRESEIKNFFGRKVAIDASMCLYQFLIAVRSEGAQLATVNGDPTSHLMGM 67
Query: 357 FYRTIRLVEHGLKPIYVFDGKPPTLKSGELNKRMEKREDAQKALAKAQEQG 407
FYRTIRL+++G+KP+YVFDG+PP LKSGEL KR E+RE+A+KAL A E G
Sbjct: 68 FYRTIRLLDNGIKPVYVFDGQPPDLKSGELAKRAERREEAEKALKAATEAG 118
Score = 120 bits (301), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 53/74 (71%), Positives = 61/74 (82%)
Query: 232 FIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGWLYKEAREL 291
FIDLCIL+GCDYC+SI+G+GPKRAIELIK +R IE ILENIDT KY VPE W YK AREL
Sbjct: 223 FIDLCILMGCDYCESIKGVGPKRAIELIKSYRDIETILENIDTSKYPVPENWNYKRAREL 282
Query: 292 FRHPEIADPETIEL 305
F P++AD I+L
Sbjct: 283 FIEPDVADASAIDL 296
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 35/52 (67%), Positives = 46/52 (88%)
Query: 1 MTLKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSSTTQGRLDSFFT 52
+ LKW++PDEDGLV++LCGD+ F E+R+RNGAKKLLK++ + TQ RLDSFFT
Sbjct: 294 IDLKWTEPDEDGLVQFLCGDRQFNEERVRNGAKKLLKSKQAQTQVRLDSFFT 345
Score = 83.2 bits (204), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 35/50 (70%), Positives = 44/50 (88%)
Query: 409 LKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSTTTQGRLDSFFT 458
LKW++PDEDGLV++LCGD+ F E+R+RNGAKKLLK++ TQ RLDSFFT
Sbjct: 296 LKWTEPDEDGLVQFLCGDRQFNEERVRNGAKKLLKSKQAQTQVRLDSFFT 345
>gi|241627391|ref|XP_002409855.1| endonuclease, putative [Ixodes scapularis]
gi|215503262|gb|EEC12756.1| endonuclease, putative [Ixodes scapularis]
Length = 384
Score = 225 bits (574), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 104/147 (70%), Positives = 125/147 (85%), Gaps = 5/147 (3%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVLE 120
APCEAEAQCA +VK GKVY TATEDMD LTFG+N+LLRHMT+SEARK+P++EF+LE+VL
Sbjct: 153 APCEAEAQCAELVKGGKVYGTATEDMDGLTFGTNVLLRHMTYSEARKMPIKEFNLERVLS 212
Query: 121 GMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTK-----KYT 175
G+EL+ +EFIDLCILLGCDYC+SIRGIGPKRAIELIK+H+SIEKI+ +IDTK KYT
Sbjct: 213 GLELNRDEFIDLCILLGCDYCESIRGIGPKRAIELIKQHKSIEKIISSIDTKACCDTKYT 272
Query: 176 VPEGWLYKEARELFRHPEVADPETIEF 202
+PE W +KEAR+LF PEV I+
Sbjct: 273 IPEDWPFKEARQLFLEPEVTPASEIQL 299
Score = 115 bits (287), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 54/79 (68%), Positives = 64/79 (81%), Gaps = 5/79 (6%)
Query: 232 FIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTK-----KYTVPEGWLYK 286
FIDLCILLGCDYC+SIRGIGPKRAIELIK+H+SIEKI+ +IDTK KYT+PE W +K
Sbjct: 221 FIDLCILLGCDYCESIRGIGPKRAIELIKQHKSIEKIISSIDTKACCDTKYTIPEDWPFK 280
Query: 287 EARELFRHPEIADPETIEL 305
EAR+LF PE+ I+L
Sbjct: 281 EARQLFLEPEVTPASEIQL 299
Score = 90.9 bits (224), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 44/64 (68%), Positives = 52/64 (81%), Gaps = 4/64 (6%)
Query: 408 KLKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSTTTQGRLDSFFTIRREE---- 463
+LKW+DPDEDGLVK+LC + F+E+RIRNGAKKLLK R+TTTQGRLDSFF + E
Sbjct: 298 QLKWTDPDEDGLVKFLCEENGFSEERIRNGAKKLLKGRNTTTQGRLDSFFKVVPSEGPSA 357
Query: 464 KRKS 467
KRKS
Sbjct: 358 KRKS 361
Score = 90.1 bits (222), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 41/68 (60%), Positives = 54/68 (79%)
Query: 1 MTLKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSSTTQGRLDSFFTIRREEKRK 60
+ LKW+DPDEDGLVK+LC + F+E+RIRNGAKKLLK R++TTQGRLDSFF + E
Sbjct: 297 IQLKWTDPDEDGLVKFLCEENGFSEERIRNGAKKLLKGRNTTTQGRLDSFFKVVPSEGPS 356
Query: 61 APCEAEAQ 68
A ++E++
Sbjct: 357 AKRKSESK 364
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/60 (51%), Positives = 40/60 (66%), Gaps = 7/60 (11%)
Query: 304 ELVADVAPSSIRES-------RKICIDASMSLYQFLIAVRSEGNQLMSVDGEPTSHLMGT 356
+++AD APS+I+E +KI IDASM LYQFLIAVR E N L + DGE T + + T
Sbjct: 8 KVIADNAPSAIKEGDIKSYFGKKIAIDASMCLYQFLIAVRQENNMLTNSDGETTRYGLPT 67
>gi|82187497|sp|Q6TNU4.1|FEN1A_DANRE RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|37362214|gb|AAQ91235.1| flap structure-specific endonuclease 1 [Danio rerio]
gi|47940409|gb|AAH71488.1| Fen1 protein [Danio rerio]
Length = 380
Score = 224 bits (572), Expect = 7e-56, Method: Compositional matrix adjust.
Identities = 100/142 (70%), Positives = 121/142 (85%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVLE 120
APCEAEA CAA+VKAGKVYATATEDMD LTFG+ +LLRH+T SEA+KLP+QEFH ++L+
Sbjct: 155 APCEAEASCAALVKAGKVYATATEDMDGLTFGTTVLLRHLTASEAKKLPIQEFHFSRILQ 214
Query: 121 GMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGW 180
MEL+H++FIDLCILLGCDYC +I+GIGPKRAI+LIK+H SIE+ILENID K+ PE W
Sbjct: 215 DMELTHQQFIDLCILLGCDYCGTIKGIGPKRAIDLIKQHGSIEEILENIDPNKHPAPEDW 274
Query: 181 LYKEARELFRHPEVADPETIEF 202
LYKEAR LF PEV D +++
Sbjct: 275 LYKEARGLFLEPEVVDGTSVDL 296
Score = 148 bits (373), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 76/125 (60%), Positives = 94/125 (75%), Gaps = 7/125 (5%)
Query: 304 ELVADVAPSSIRE-------SRKICIDASMSLYQFLIAVRSEGNQLMSVDGEPTSHLMGT 356
+L+AD APS+I+E RKI IDASM +YQFLIAVR +GN L + DGE TSHLMG
Sbjct: 8 KLIADHAPSAIKEHEIKSYFGRKIAIDASMCIYQFLIAVRQDGNVLQNEDGETTSHLMGM 67
Query: 357 FYRTIRLVEHGLKPIYVFDGKPPTLKSGELNKRMEKREDAQKALAKAQEQGKLKWSDPDE 416
FYRTIR++E G+KP+YVFDGKPP LKSGEL KR+E+R +A+K LA+AQE G+ + D
Sbjct: 68 FYRTIRMLESGIKPVYVFDGKPPQLKSGELEKRVERRAEAEKLLAQAQEAGEQENIDKFS 127
Query: 417 DGLVK 421
LVK
Sbjct: 128 KRLVK 132
Score = 116 bits (290), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 51/74 (68%), Positives = 61/74 (82%)
Query: 232 FIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGWLYKEAREL 291
FIDLCILLGCDYC +I+GIGPKRAI+LIK+H SIE+ILENID K+ PE WLYKEAR L
Sbjct: 223 FIDLCILLGCDYCGTIKGIGPKRAIDLIKQHGSIEEILENIDPNKHPAPEDWLYKEARGL 282
Query: 292 FRHPEIADPETIEL 305
F PE+ D +++L
Sbjct: 283 FLEPEVVDGTSVDL 296
Score = 84.3 bits (207), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 36/62 (58%), Positives = 49/62 (79%), Gaps = 2/62 (3%)
Query: 3 LKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSSTTQGRLDSFFTIRR--EEKRK 60
LKW++PDEDGL++++C +K F+EDRIRNG KK+ K+R +TQGRLD+FFT+ KRK
Sbjct: 296 LKWNEPDEDGLIQFMCAEKQFSEDRIRNGCKKITKSRQGSTQGRLDTFFTVTGSISSKRK 355
Query: 61 AP 62
P
Sbjct: 356 EP 357
Score = 82.4 bits (202), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 32/51 (62%), Positives = 45/51 (88%)
Query: 409 LKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSTTTQGRLDSFFTI 459
LKW++PDEDGL++++C +K F+EDRIRNG KK+ K+R +TQGRLD+FFT+
Sbjct: 296 LKWNEPDEDGLIQFMCAEKQFSEDRIRNGCKKITKSRQGSTQGRLDTFFTV 346
>gi|17647423|ref|NP_523765.1| flap endonuclease 1 [Drosophila melanogaster]
gi|122102839|sp|Q7K7A9.1|FEN1_DROME RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|3929699|emb|CAA21320.1| EG:EG0003.3 [Drosophila melanogaster]
gi|7302871|gb|AAF57944.1| flap endonuclease 1 [Drosophila melanogaster]
gi|261260009|gb|ACX54939.1| MIP14376p [Drosophila melanogaster]
Length = 385
Score = 224 bits (571), Expect = 9e-56, Method: Compositional matrix adjust.
Identities = 103/142 (72%), Positives = 124/142 (87%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVLE 120
APCEAEAQCAA+VKAGKVYATATEDMDALTFGS LLR++T+SEARK+PV+EF +K+LE
Sbjct: 155 APCEAEAQCAALVKAGKVYATATEDMDALTFGSTKLLRYLTYSEARKMPVKEFSYDKLLE 214
Query: 121 GMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGW 180
G+ +++ EFIDLCILLGCDYC+SI+GIGPKRAIELI +R IE IL+N+D+ KYTVPE W
Sbjct: 215 GLAINNREFIDLCILLGCDYCESIKGIGPKRAIELINTYRDIETILDNLDSSKYTVPENW 274
Query: 181 LYKEARELFRHPEVADPETIEF 202
YK ARELF PEVAD ++I+
Sbjct: 275 NYKVARELFIEPEVADADSIDL 296
Score = 155 bits (392), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 77/126 (61%), Positives = 97/126 (76%), Gaps = 14/126 (11%)
Query: 304 ELVADVAPSSIRES-------RKICIDASMSLYQFLIAVRSEGNQLMSVDGEPTSHLMGT 356
+L+AD+AP +IRES RK+ IDASM LYQFLIAVRSEG QL +V+G+PTSHLMG
Sbjct: 8 KLIADLAPQAIRESEMKHFFGRKVAIDASMCLYQFLIAVRSEGAQLATVNGDPTSHLMGM 67
Query: 357 FYRTIRLVEHGLKPIYVFDGKPPTLKSGELNKRMEKREDAQKALAKAQEQGKLKWSDPDE 416
FYRTIRL+++G+KP+YVFDGKPP LKSGEL KR E+RE+A+KAL A + G D+
Sbjct: 68 FYRTIRLLDNGIKPVYVFDGKPPDLKSGELAKRAERREEAEKALKAATDAG-------DD 120
Query: 417 DGLVKY 422
G+ K+
Sbjct: 121 AGIEKF 126
Score = 121 bits (303), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 64/130 (49%), Positives = 85/130 (65%), Gaps = 5/130 (3%)
Query: 232 FIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGWLYKEAREL 291
FIDLCILLGCDYC+SI+GIGPKRAIELI +R IE IL+N+D+ KYTVPE W YK AREL
Sbjct: 223 FIDLCILLGCDYCESIKGIGPKRAIELINTYRDIETILDNLDSSKYTVPENWNYKVAREL 282
Query: 292 FRHPEIADPETIELVADVAPSSIRESRKICIDASMSLYQFLIAVRSEGNQLMSVDGEPTS 351
F PE+AD ++I+L V P + +C D + + VR+ +LM T
Sbjct: 283 FIEPEVADADSIDLKW-VEPDEEGLVKFLCGDRQFNEER----VRNGAKKLMKSKQAQTQ 337
Query: 352 HLMGTFYRTI 361
+ +F++T+
Sbjct: 338 VRLDSFFKTL 347
Score = 79.7 bits (195), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 39/75 (52%), Positives = 51/75 (68%), Gaps = 7/75 (9%)
Query: 1 MTLKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSSTTQGRLDSFFTIRREEKRK 60
+ LKW +PDE+GLVK+LCGD+ F E+R+RNGAKKL+K++ + TQ RLDSFF +
Sbjct: 294 IDLKWVEPDEEGLVKFLCGDRQFNEERVRNGAKKLMKSKQAQTQVRLDSFF-------KT 346
Query: 61 APCEAEAQCAAMVKA 75
P A AA KA
Sbjct: 347 LPSTPNATNAAKRKA 361
Score = 78.6 bits (192), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 33/49 (67%), Positives = 42/49 (85%)
Query: 409 LKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSTTTQGRLDSFF 457
LKW +PDE+GLVK+LCGD+ F E+R+RNGAKKL+K++ TQ RLDSFF
Sbjct: 296 LKWVEPDEEGLVKFLCGDRQFNEERVRNGAKKLMKSKQAQTQVRLDSFF 344
>gi|194756700|ref|XP_001960614.1| GF13444 [Drosophila ananassae]
gi|317374888|sp|B3MDA3.1|FEN1_DROAN RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|190621912|gb|EDV37436.1| GF13444 [Drosophila ananassae]
Length = 388
Score = 224 bits (571), Expect = 9e-56, Method: Compositional matrix adjust.
Identities = 104/143 (72%), Positives = 124/143 (86%)
Query: 60 KAPCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVL 119
+APCEAEAQCAA+VKAGKVYATATEDMDALTFGS LLR++T+SEARK+PV+EF EK+L
Sbjct: 154 EAPCEAEAQCAALVKAGKVYATATEDMDALTFGSTKLLRYLTYSEARKMPVKEFSYEKLL 213
Query: 120 EGMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEG 179
+G+ +++ EFIDLCILLGCDYC+SI+GIGPKRAIELI +R IE IL+N+DT KYTVPE
Sbjct: 214 DGLGVNNREFIDLCILLGCDYCESIKGIGPKRAIELINNYRDIETILDNLDTSKYTVPEN 273
Query: 180 WLYKEARELFRHPEVADPETIEF 202
W YK ARELF PEVA+ + IE
Sbjct: 274 WNYKIARELFIEPEVANADAIEL 296
Score = 157 bits (396), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 75/111 (67%), Positives = 91/111 (81%), Gaps = 7/111 (6%)
Query: 304 ELVADVAPSSIRES-------RKICIDASMSLYQFLIAVRSEGNQLMSVDGEPTSHLMGT 356
+L+AD+AP +IRES RK+ IDASM LYQFLIAVRSEG QL +V+G+PTSHLMG
Sbjct: 8 KLIADLAPQAIRESEIKNFFGRKVAIDASMCLYQFLIAVRSEGAQLATVNGDPTSHLMGM 67
Query: 357 FYRTIRLVEHGLKPIYVFDGKPPTLKSGELNKRMEKREDAQKALAKAQEQG 407
FYRTIRL+++G+KP+YVFDGKPP LKSGEL KR E+RE+A+KAL A E G
Sbjct: 68 FYRTIRLLDNGIKPVYVFDGKPPDLKSGELAKRAERREEAEKALKAATEAG 118
Score = 120 bits (302), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 54/74 (72%), Positives = 62/74 (83%)
Query: 232 FIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGWLYKEAREL 291
FIDLCILLGCDYC+SI+GIGPKRAIELI +R IE IL+N+DT KYTVPE W YK AREL
Sbjct: 223 FIDLCILLGCDYCESIKGIGPKRAIELINNYRDIETILDNLDTSKYTVPENWNYKIAREL 282
Query: 292 FRHPEIADPETIEL 305
F PE+A+ + IEL
Sbjct: 283 FIEPEVANADAIEL 296
Score = 82.8 bits (203), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 41/75 (54%), Positives = 52/75 (69%), Gaps = 7/75 (9%)
Query: 1 MTLKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSSTTQGRLDSFFTIRREEKRK 60
+ LKW++PDE+GLVK+LCGD+ F EDR+R+GAKKLLK++ S TQ RLDSFF +
Sbjct: 294 IELKWTEPDEEGLVKFLCGDRQFNEDRVRSGAKKLLKSKQSQTQVRLDSFF-------KT 346
Query: 61 APCEAEAQCAAMVKA 75
P A AA KA
Sbjct: 347 LPSTPSATNAAKRKA 361
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 34/50 (68%), Positives = 45/50 (90%)
Query: 408 KLKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSTTTQGRLDSFF 457
+LKW++PDE+GLVK+LCGD+ F EDR+R+GAKKLLK++ + TQ RLDSFF
Sbjct: 295 ELKWTEPDEEGLVKFLCGDRQFNEDRVRSGAKKLLKSKQSQTQVRLDSFF 344
>gi|194882401|ref|XP_001975300.1| GG22240 [Drosophila erecta]
gi|317374889|sp|B3NP61.1|FEN1_DROER RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|190658487|gb|EDV55700.1| GG22240 [Drosophila erecta]
Length = 387
Score = 224 bits (570), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 103/142 (72%), Positives = 123/142 (86%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVLE 120
APCEAEAQCAA+VKAGKVYATATEDMDALTFGS LLR++T+SEARK+PV+EF +K+LE
Sbjct: 155 APCEAEAQCAALVKAGKVYATATEDMDALTFGSTKLLRYLTYSEARKMPVKEFSYDKLLE 214
Query: 121 GMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGW 180
G+ ++ EFIDLCILLGCDYC+SI+GIGPKRAIELI +R IE IL+N+D+ KYTVPE W
Sbjct: 215 GLSINSREFIDLCILLGCDYCESIKGIGPKRAIELINNYRDIETILDNLDSSKYTVPENW 274
Query: 181 LYKEARELFRHPEVADPETIEF 202
YK ARELF PEVA+ E+I+
Sbjct: 275 NYKVARELFIEPEVANAESIDL 296
Score = 155 bits (393), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 77/126 (61%), Positives = 97/126 (76%), Gaps = 14/126 (11%)
Query: 304 ELVADVAPSSIRES-------RKICIDASMSLYQFLIAVRSEGNQLMSVDGEPTSHLMGT 356
+L+AD+AP +IRES RK+ IDASM LYQFLIAVRSEG QL +V+G+PTSHLMG
Sbjct: 8 KLIADLAPQAIRESEMKHFFGRKVAIDASMCLYQFLIAVRSEGAQLATVNGDPTSHLMGM 67
Query: 357 FYRTIRLVEHGLKPIYVFDGKPPTLKSGELNKRMEKREDAQKALAKAQEQGKLKWSDPDE 416
FYRTIRL+++G+KP+YVFDGKPP LKSGEL KR E+RE+A+KAL A + G D+
Sbjct: 68 FYRTIRLLDNGIKPVYVFDGKPPDLKSGELAKRAERREEAEKALKAATDAG-------DD 120
Query: 417 DGLVKY 422
G+ K+
Sbjct: 121 AGIEKF 126
Score = 122 bits (307), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 65/130 (50%), Positives = 85/130 (65%), Gaps = 5/130 (3%)
Query: 232 FIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGWLYKEAREL 291
FIDLCILLGCDYC+SI+GIGPKRAIELI +R IE IL+N+D+ KYTVPE W YK AREL
Sbjct: 223 FIDLCILLGCDYCESIKGIGPKRAIELINNYRDIETILDNLDSSKYTVPENWNYKVAREL 282
Query: 292 FRHPEIADPETIELVADVAPSSIRESRKICIDASMSLYQFLIAVRSEGNQLMSVDGEPTS 351
F PE+A+ E+I+L V P + +C D S + VR+ +LM T
Sbjct: 283 FIEPEVANAESIDLKW-VEPDEEGLVKFLCGDRQFSEER----VRNGAKKLMKSKQAQTQ 337
Query: 352 HLMGTFYRTI 361
+ +F++T+
Sbjct: 338 VRLDSFFKTL 347
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 39/75 (52%), Positives = 52/75 (69%), Gaps = 7/75 (9%)
Query: 1 MTLKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSSTTQGRLDSFFTIRREEKRK 60
+ LKW +PDE+GLVK+LCGD+ F+E+R+RNGAKKL+K++ + TQ RLDSFF +
Sbjct: 294 IDLKWVEPDEEGLVKFLCGDRQFSEERVRNGAKKLMKSKQAQTQVRLDSFF-------KT 346
Query: 61 APCEAEAQCAAMVKA 75
P A AA KA
Sbjct: 347 LPSTPNATNAAKRKA 361
Score = 80.1 bits (196), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 33/49 (67%), Positives = 43/49 (87%)
Query: 409 LKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSTTTQGRLDSFF 457
LKW +PDE+GLVK+LCGD+ F+E+R+RNGAKKL+K++ TQ RLDSFF
Sbjct: 296 LKWVEPDEEGLVKFLCGDRQFSEERVRNGAKKLMKSKQAQTQVRLDSFF 344
>gi|195488056|ref|XP_002092153.1| GE14031 [Drosophila yakuba]
gi|317374898|sp|B4P5U9.1|FEN1_DROYA RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|194178254|gb|EDW91865.1| GE14031 [Drosophila yakuba]
Length = 387
Score = 223 bits (569), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 103/142 (72%), Positives = 122/142 (85%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVLE 120
APCEAEAQCAA+VKAGKVYATATEDMDALTFGS LLR++T+SEARK+PV+EF EK+LE
Sbjct: 155 APCEAEAQCAALVKAGKVYATATEDMDALTFGSTKLLRYLTYSEARKMPVKEFSYEKLLE 214
Query: 121 GMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGW 180
G+ ++ EFIDLCILLGCDYC+SI+GIGPKRAIELI +R IE IL+N+D+ KYTVPE W
Sbjct: 215 GLSINSREFIDLCILLGCDYCESIKGIGPKRAIELINNYRDIETILDNLDSSKYTVPENW 274
Query: 181 LYKEARELFRHPEVADPETIEF 202
YK ARELF PEVA+ + I+
Sbjct: 275 NYKVARELFIEPEVANADNIDL 296
Score = 155 bits (393), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 77/126 (61%), Positives = 97/126 (76%), Gaps = 14/126 (11%)
Query: 304 ELVADVAPSSIRES-------RKICIDASMSLYQFLIAVRSEGNQLMSVDGEPTSHLMGT 356
+L+AD+AP +IRES RK+ IDASM LYQFLIAVRSEG QL +V+G+PTSHLMG
Sbjct: 8 KLIADLAPQAIRESEIKNFFGRKVAIDASMCLYQFLIAVRSEGAQLATVNGDPTSHLMGM 67
Query: 357 FYRTIRLVEHGLKPIYVFDGKPPTLKSGELNKRMEKREDAQKALAKAQEQGKLKWSDPDE 416
FYRTIRL+++G+KP+YVFDGKPP LKSGEL KR E+RE+A+KAL A + G D+
Sbjct: 68 FYRTIRLLDNGIKPVYVFDGKPPDLKSGELAKRAERREEAEKALKAATDAG-------DD 120
Query: 417 DGLVKY 422
G+ K+
Sbjct: 121 AGIEKF 126
Score = 120 bits (302), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 64/130 (49%), Positives = 84/130 (64%), Gaps = 5/130 (3%)
Query: 232 FIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGWLYKEAREL 291
FIDLCILLGCDYC+SI+GIGPKRAIELI +R IE IL+N+D+ KYTVPE W YK AREL
Sbjct: 223 FIDLCILLGCDYCESIKGIGPKRAIELINNYRDIETILDNLDSSKYTVPENWNYKVAREL 282
Query: 292 FRHPEIADPETIELVADVAPSSIRESRKICIDASMSLYQFLIAVRSEGNQLMSVDGEPTS 351
F PE+A+ + I+L V P + +C D S + VR+ +LM T
Sbjct: 283 FIEPEVANADNIDLKW-VEPDEEGLVKFLCGDRQFSEER----VRNGAKKLMKSKQAQTQ 337
Query: 352 HLMGTFYRTI 361
+ +F++T+
Sbjct: 338 VRLDSFFKTL 347
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 39/75 (52%), Positives = 52/75 (69%), Gaps = 7/75 (9%)
Query: 1 MTLKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSSTTQGRLDSFFTIRREEKRK 60
+ LKW +PDE+GLVK+LCGD+ F+E+R+RNGAKKL+K++ + TQ RLDSFF +
Sbjct: 294 IDLKWVEPDEEGLVKFLCGDRQFSEERVRNGAKKLMKSKQAQTQVRLDSFF-------KT 346
Query: 61 APCEAEAQCAAMVKA 75
P A AA KA
Sbjct: 347 LPSTPNATNAAKRKA 361
Score = 79.7 bits (195), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 33/49 (67%), Positives = 43/49 (87%)
Query: 409 LKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSTTTQGRLDSFF 457
LKW +PDE+GLVK+LCGD+ F+E+R+RNGAKKL+K++ TQ RLDSFF
Sbjct: 296 LKWVEPDEEGLVKFLCGDRQFSEERVRNGAKKLMKSKQAQTQVRLDSFF 344
>gi|410909029|ref|XP_003967993.1| PREDICTED: flap endonuclease 1-like [Takifugu rubripes]
Length = 380
Score = 223 bits (568), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 101/142 (71%), Positives = 122/142 (85%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVLE 120
APCEAEA CAA+VKAGKV+ATATEDMD LTFG+N+LLRH+T SEA+KLP+QEFH +VL+
Sbjct: 155 APCEAEASCAALVKAGKVFATATEDMDGLTFGTNVLLRHLTASEAKKLPIQEFHFSRVLQ 214
Query: 121 GMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGW 180
L++E+FIDLCILLGCDYC +I+GIGPKRAI+LIK+H SIE+ILENIDT KY PE W
Sbjct: 215 ETGLTNEQFIDLCILLGCDYCGTIKGIGPKRAIDLIKQHGSIEEILENIDTNKYPSPEDW 274
Query: 181 LYKEARELFRHPEVADPETIEF 202
L+KEAR LF +P+V D T+E
Sbjct: 275 LFKEARGLFVNPDVVDCSTVEL 296
Score = 146 bits (369), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 72/111 (64%), Positives = 86/111 (77%), Gaps = 7/111 (6%)
Query: 304 ELVADVAPSSIRE-------SRKICIDASMSLYQFLIAVRSEGNQLMSVDGEPTSHLMGT 356
+L+AD AP +I+E RKI IDASM +YQFLIAVR +GN L + DGE TSHLMG
Sbjct: 8 KLIADQAPGAIKEQDIKNYFGRKIAIDASMCMYQFLIAVRQDGNVLQNEDGETTSHLMGM 67
Query: 357 FYRTIRLVEHGLKPIYVFDGKPPTLKSGELNKRMEKREDAQKALAKAQEQG 407
FYRTIR++EHG+KP+YVFDGKPP LKS EL KR EKR +A+K LA+AQE G
Sbjct: 68 FYRTIRMLEHGIKPVYVFDGKPPQLKSSELEKRGEKRAEAEKLLAQAQETG 118
Score = 119 bits (299), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 53/74 (71%), Positives = 63/74 (85%)
Query: 232 FIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGWLYKEAREL 291
FIDLCILLGCDYC +I+GIGPKRAI+LIK+H SIE+ILENIDT KY PE WL+KEAR L
Sbjct: 223 FIDLCILLGCDYCGTIKGIGPKRAIDLIKQHGSIEEILENIDTNKYPSPEDWLFKEARGL 282
Query: 292 FRHPEIADPETIEL 305
F +P++ D T+EL
Sbjct: 283 FVNPDVVDCSTVEL 296
Score = 85.5 bits (210), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 37/62 (59%), Positives = 49/62 (79%), Gaps = 2/62 (3%)
Query: 3 LKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSSTTQGRLDSFFTIRR--EEKRK 60
LKW +PDEDGL++++C +K F+EDRIRNG KK++K+R +TQGRLDSFFT+ KRK
Sbjct: 296 LKWGEPDEDGLIQFMCNEKQFSEDRIRNGCKKIVKSRQGSTQGRLDSFFTVTGSLSSKRK 355
Query: 61 AP 62
P
Sbjct: 356 EP 357
Score = 83.6 bits (205), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 33/51 (64%), Positives = 45/51 (88%)
Query: 409 LKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSTTTQGRLDSFFTI 459
LKW +PDEDGL++++C +K F+EDRIRNG KK++K+R +TQGRLDSFFT+
Sbjct: 296 LKWGEPDEDGLIQFMCNEKQFSEDRIRNGCKKIVKSRQGSTQGRLDSFFTV 346
>gi|327278874|ref|XP_003224185.1| PREDICTED: LOW QUALITY PROTEIN: flap endonuclease 1-like [Anolis
carolinensis]
Length = 515
Score = 223 bits (568), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 99/142 (69%), Positives = 123/142 (86%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVLE 120
AP EAEA CAA+VKA KVYA ATEDMD LTFGS +L+RH+T SEA+KLP+QEFHL ++L+
Sbjct: 288 APGEAEASCAALVKANKVYAAATEDMDCLTFGSPVLMRHLTASEAKKLPIQEFHLSRILQ 347
Query: 121 GMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGW 180
+ L+ EEF+DLCILLGCDYC+SIRGIGPKRA+ELIK+H+SIEKI++ IDTKKY++PE W
Sbjct: 348 DLSLTQEEFVDLCILLGCDYCESIRGIGPKRAVELIKQHKSIEKIIQQIDTKKYSLPENW 407
Query: 181 LYKEARELFRHPEVADPETIEF 202
L+KEA++LF PEV D E +E
Sbjct: 408 LHKEAQQLFLEPEVIDAEAVEL 429
Score = 145 bits (365), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 69/111 (62%), Positives = 88/111 (79%), Gaps = 7/111 (6%)
Query: 304 ELVADVAPSSIRE-------SRKICIDASMSLYQFLIAVRSEGNQLMSVDGEPTSHLMGT 356
+L+AD+AP++IRE RK+ IDASMS+YQFLIAVR + L + +GE TSHLMG
Sbjct: 141 KLIADIAPAAIREXDIKSYFGRKVAIDASMSIYQFLIAVRQGADMLQNEEGETTSHLMGM 200
Query: 357 FYRTIRLVEHGLKPIYVFDGKPPTLKSGELNKRMEKREDAQKALAKAQEQG 407
FYRTIR+VE+GLKP+YVFDGKPP LKSGEL KR+E+R +A+K L +A+E G
Sbjct: 201 FYRTIRMVENGLKPVYVFDGKPPQLKSGELAKRIERRTEAEKQLQEAKEAG 251
Score = 126 bits (316), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 53/74 (71%), Positives = 67/74 (90%)
Query: 232 FIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGWLYKEAREL 291
F+DLCILLGCDYC+SIRGIGPKRA+ELIK+H+SIEKI++ IDTKKY++PE WL+KEA++L
Sbjct: 356 FVDLCILLGCDYCESIRGIGPKRAVELIKQHKSIEKIIQQIDTKKYSLPENWLHKEAQQL 415
Query: 292 FRHPEIADPETIEL 305
F PE+ D E +EL
Sbjct: 416 FLEPEVIDAEAVEL 429
Score = 75.9 bits (185), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 42/84 (50%), Positives = 55/84 (65%), Gaps = 7/84 (8%)
Query: 3 LKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSSTTQGRLDSFFTIR---REEKR 59
LKWS+P+E+ LV ++CG+K F E+RIRNG K+L K+R +TQGRLD FF I KR
Sbjct: 429 LKWSEPNEEELVNFMCGEKQFNEERIRNGVKRLNKSRQGSTQGRLDDFFKITGSITSAKR 488
Query: 60 KAPCEAEAQCAAMVKA-GKVYATA 82
K P E + +A KA G AT+
Sbjct: 489 KEP---EPKGSAKKKARGSGSATS 509
Score = 74.7 bits (182), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 32/55 (58%), Positives = 43/55 (78%)
Query: 405 EQGKLKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSTTTQGRLDSFFTI 459
E +LKWS+P+E+ LV ++CG+K F E+RIRNG K+L K+R +TQGRLD FF I
Sbjct: 425 EAVELKWSEPNEEELVNFMCGEKQFNEERIRNGVKRLNKSRQGSTQGRLDDFFKI 479
>gi|348540973|ref|XP_003457961.1| PREDICTED: flap endonuclease 1-like [Oreochromis niloticus]
Length = 380
Score = 223 bits (568), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 101/142 (71%), Positives = 122/142 (85%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVLE 120
APCEAEA CAA+VKAGKV+ATATEDMD LTFG+NILLRH+T SEA+KLP+QEFH ++L+
Sbjct: 155 APCEAEASCAALVKAGKVFATATEDMDGLTFGTNILLRHLTASEAKKLPIQEFHFSRILQ 214
Query: 121 GMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGW 180
+ L++E+FIDLCILLGCDYC +I+GIGPKRAI+LIK+H SIE+ILENID+ K+ PE W
Sbjct: 215 DIGLTNEQFIDLCILLGCDYCGTIKGIGPKRAIDLIKQHGSIEEILENIDSNKHPAPEDW 274
Query: 181 LYKEARELFRHPEVADPETIEF 202
LYKEAR LF PEV D T+E
Sbjct: 275 LYKEARGLFLKPEVVDCSTVEL 296
Score = 145 bits (367), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 75/125 (60%), Positives = 92/125 (73%), Gaps = 7/125 (5%)
Query: 304 ELVADVAPSSIRE-------SRKICIDASMSLYQFLIAVRSEGNQLMSVDGEPTSHLMGT 356
+L+AD AP +I+E RKI IDASM +YQFLIAVR +GN L + DGE TSHLMG
Sbjct: 8 KLIADQAPGAIKEQDIKNYFGRKIAIDASMCIYQFLIAVRQDGNVLQNEDGETTSHLMGM 67
Query: 357 FYRTIRLVEHGLKPIYVFDGKPPTLKSGELNKRMEKREDAQKALAKAQEQGKLKWSDPDE 416
FYRTIR++EHG+KP+YVFDGKPP LKS EL KR E+R +A+K LA+AQE G+ + D
Sbjct: 68 FYRTIRMLEHGIKPVYVFDGKPPQLKSAELEKRGERRAEAEKMLAQAQEIGEQENIDKFT 127
Query: 417 DGLVK 421
LVK
Sbjct: 128 KRLVK 132
Score = 118 bits (296), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 53/74 (71%), Positives = 62/74 (83%)
Query: 232 FIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGWLYKEAREL 291
FIDLCILLGCDYC +I+GIGPKRAI+LIK+H SIE+ILENID+ K+ PE WLYKEAR L
Sbjct: 223 FIDLCILLGCDYCGTIKGIGPKRAIDLIKQHGSIEEILENIDSNKHPAPEDWLYKEARGL 282
Query: 292 FRHPEIADPETIEL 305
F PE+ D T+EL
Sbjct: 283 FLKPEVVDCSTVEL 296
Score = 83.2 bits (204), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 36/62 (58%), Positives = 50/62 (80%), Gaps = 2/62 (3%)
Query: 3 LKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSSTTQGRLDSFFTIRR--EEKRK 60
LKW++PDE+GL++++C +K F+EDRIRNG KK++K+R +TQGRLDSFFT+ KRK
Sbjct: 296 LKWNEPDEEGLIQFMCEEKQFSEDRIRNGCKKIVKSRQGSTQGRLDSFFTVTGSLSSKRK 355
Query: 61 AP 62
P
Sbjct: 356 EP 357
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 32/51 (62%), Positives = 46/51 (90%)
Query: 409 LKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSTTTQGRLDSFFTI 459
LKW++PDE+GL++++C +K F+EDRIRNG KK++K+R +TQGRLDSFFT+
Sbjct: 296 LKWNEPDEEGLIQFMCEEKQFSEDRIRNGCKKIVKSRQGSTQGRLDSFFTV 346
>gi|291239422|ref|XP_002739622.1| PREDICTED: flap structure-specific endonuclease 1-like
[Saccoglossus kowalevskii]
Length = 379
Score = 223 bits (568), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 100/142 (70%), Positives = 124/142 (87%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVLE 120
AP EAEAQCA +VKAGKVYATATEDMD+LTFGS+ ++RHMTFSEARK+P QE++L +L
Sbjct: 155 APGEAEAQCAELVKAGKVYATATEDMDSLTFGSSTVVRHMTFSEARKMPCQEYNLNNILA 214
Query: 121 GMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGW 180
+ELS +EFIDLCILLGCDYCDSIRGIGPKRAI+LI++H++IE+++ ++D+KKYTVP+GW
Sbjct: 215 ELELSQDEFIDLCILLGCDYCDSIRGIGPKRAIDLIRQHKTIEEVIAHLDSKKYTVPDGW 274
Query: 181 LYKEARELFRHPEVADPETIEF 202
LYKEARELF+ P V IE
Sbjct: 275 LYKEARELFKKPNVTAGVDIEL 296
Score = 159 bits (403), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 75/111 (67%), Positives = 94/111 (84%), Gaps = 7/111 (6%)
Query: 304 ELVADVAPSSIRES-------RKICIDASMSLYQFLIAVRSEGNQLMSVDGEPTSHLMGT 356
+L+AD APSS++E+ RK+ IDASMS+YQFLIAVR +GN L + DG+ TSHLMG
Sbjct: 8 KLIADCAPSSVKENEMKNYFGRKVAIDASMSIYQFLIAVRQDGNVLTNEDGDTTSHLMGM 67
Query: 357 FYRTIRLVEHGLKPIYVFDGKPPTLKSGELNKRMEKREDAQKALAKAQEQG 407
FYRTIR+V+HG+KP+YVFDGKPP LKSGEL+KR EKRE+A+KALAKA+E+G
Sbjct: 68 FYRTIRMVDHGIKPLYVFDGKPPDLKSGELSKRAEKREEAEKALAKAEEEG 118
Score = 124 bits (310), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 52/74 (70%), Positives = 66/74 (89%)
Query: 232 FIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGWLYKEAREL 291
FIDLCILLGCDYCDSIRGIGPKRAI+LI++H++IE+++ ++D+KKYTVP+GWLYKEAREL
Sbjct: 223 FIDLCILLGCDYCDSIRGIGPKRAIDLIRQHKTIEEVIAHLDSKKYTVPDGWLYKEAREL 282
Query: 292 FRHPEIADPETIEL 305
F+ P + IEL
Sbjct: 283 FKKPNVTAGVDIEL 296
Score = 91.7 bits (226), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 54/99 (54%), Positives = 63/99 (63%), Gaps = 4/99 (4%)
Query: 371 IYVFDGKPPTLKSGELNKRMEKREDAQKALAKAQEQGKLKWSDPDEDGLVKYLCGDKNFA 430
I D K T+ G L K E RE +K A +LKW DPDEDGL+ Y+ K FA
Sbjct: 260 IAHLDSKKYTVPDGWLYK--EARELFKKPNVTAGVDIELKWIDPDEDGLIDYMSKQKGFA 317
Query: 431 EDRIRNGAKKLLKARSTTTQGRLDSFFTIRREE--KRKS 467
EDRI+NGAKKLLKAR T+TQGRLDSFF++ KRKS
Sbjct: 318 EDRIKNGAKKLLKARHTSTQGRLDSFFSVMASPSIKRKS 356
Score = 86.3 bits (212), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 37/51 (72%), Positives = 44/51 (86%)
Query: 3 LKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSSTTQGRLDSFFTI 53
LKW DPDEDGL+ Y+ K FAEDRI+NGAKKLLKAR ++TQGRLDSFF++
Sbjct: 296 LKWIDPDEDGLIDYMSKQKGFAEDRIKNGAKKLLKARHTSTQGRLDSFFSV 346
>gi|195584050|ref|XP_002081828.1| GD25512 [Drosophila simulans]
gi|317374895|sp|B4QIG6.1|FEN1_DROSI RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|194193837|gb|EDX07413.1| GD25512 [Drosophila simulans]
Length = 385
Score = 223 bits (567), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 102/142 (71%), Positives = 124/142 (87%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVLE 120
APCEAEAQCAA+VKAGKVYATATEDMDALTFGS LLR++T+SEARK+PV+EF +K+LE
Sbjct: 155 APCEAEAQCAALVKAGKVYATATEDMDALTFGSTKLLRYLTYSEARKMPVKEFSYDKLLE 214
Query: 121 GMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGW 180
G+ +++ EFIDLCILLGCDYC+SI+GIGPKRAIELI +R IE IL+N+D+ KYTVPE W
Sbjct: 215 GLAINNREFIDLCILLGCDYCESIKGIGPKRAIELINTYRDIETILDNLDSSKYTVPENW 274
Query: 181 LYKEARELFRHPEVADPETIEF 202
YK ARELF PEVA+ ++I+
Sbjct: 275 NYKVARELFIEPEVANADSIDL 296
Score = 155 bits (392), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 77/126 (61%), Positives = 97/126 (76%), Gaps = 14/126 (11%)
Query: 304 ELVADVAPSSIRES-------RKICIDASMSLYQFLIAVRSEGNQLMSVDGEPTSHLMGT 356
+L+AD+AP +IRES RK+ IDASM LYQFLIAVRSEG QL +V+G+PTSHLMG
Sbjct: 8 KLIADLAPQAIRESEMKHFFGRKVAIDASMCLYQFLIAVRSEGAQLATVNGDPTSHLMGM 67
Query: 357 FYRTIRLVEHGLKPIYVFDGKPPTLKSGELNKRMEKREDAQKALAKAQEQGKLKWSDPDE 416
FYRTIRL+++G+KP+YVFDGKPP LKSGEL KR E+RE+A+KAL A + G D+
Sbjct: 68 FYRTIRLLDNGIKPVYVFDGKPPDLKSGELAKRAERREEAEKALKAATDAG-------DD 120
Query: 417 DGLVKY 422
G+ K+
Sbjct: 121 AGIEKF 126
Score = 119 bits (299), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 63/130 (48%), Positives = 85/130 (65%), Gaps = 5/130 (3%)
Query: 232 FIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGWLYKEAREL 291
FIDLCILLGCDYC+SI+GIGPKRAIELI +R IE IL+N+D+ KYTVPE W YK AREL
Sbjct: 223 FIDLCILLGCDYCESIKGIGPKRAIELINTYRDIETILDNLDSSKYTVPENWNYKVAREL 282
Query: 292 FRHPEIADPETIELVADVAPSSIRESRKICIDASMSLYQFLIAVRSEGNQLMSVDGEPTS 351
F PE+A+ ++I+L V P + +C D + + VR+ +LM T
Sbjct: 283 FIEPEVANADSIDLKW-VEPDEEGLVKFLCGDRQFNEER----VRNGAKKLMKSKQAQTQ 337
Query: 352 HLMGTFYRTI 361
+ +F++T+
Sbjct: 338 VRLDSFFKTL 347
Score = 79.7 bits (195), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 39/75 (52%), Positives = 51/75 (68%), Gaps = 7/75 (9%)
Query: 1 MTLKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSSTTQGRLDSFFTIRREEKRK 60
+ LKW +PDE+GLVK+LCGD+ F E+R+RNGAKKL+K++ + TQ RLDSFF +
Sbjct: 294 IDLKWVEPDEEGLVKFLCGDRQFNEERVRNGAKKLMKSKQAQTQVRLDSFF-------KT 346
Query: 61 APCEAEAQCAAMVKA 75
P A AA KA
Sbjct: 347 LPSTPNATNAAKRKA 361
Score = 78.6 bits (192), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 33/49 (67%), Positives = 42/49 (85%)
Query: 409 LKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSTTTQGRLDSFF 457
LKW +PDE+GLVK+LCGD+ F E+R+RNGAKKL+K++ TQ RLDSFF
Sbjct: 296 LKWVEPDEEGLVKFLCGDRQFNEERVRNGAKKLMKSKQAQTQVRLDSFF 344
>gi|195335051|ref|XP_002034189.1| GM20026 [Drosophila sechellia]
gi|317374894|sp|B4HTA1.1|FEN1_DROSE RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|194126159|gb|EDW48202.1| GM20026 [Drosophila sechellia]
Length = 385
Score = 222 bits (566), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 102/142 (71%), Positives = 124/142 (87%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVLE 120
APCEAEAQCAA+VKAGKVYATATEDMDALTFGS LLR++T+SEARK+PV+EF +K+LE
Sbjct: 155 APCEAEAQCAALVKAGKVYATATEDMDALTFGSTKLLRYLTYSEARKMPVKEFSYDKLLE 214
Query: 121 GMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGW 180
G+ +++ EFIDLCILLGCDYC+SI+GIGPKRAIELI +R IE IL+N+D+ KYTVPE W
Sbjct: 215 GLAINNREFIDLCILLGCDYCESIKGIGPKRAIELINTYRDIETILDNLDSSKYTVPENW 274
Query: 181 LYKEARELFRHPEVADPETIEF 202
YK ARELF PEVA+ ++I+
Sbjct: 275 NYKVARELFIEPEVANADSIDL 296
Score = 155 bits (392), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 77/126 (61%), Positives = 97/126 (76%), Gaps = 14/126 (11%)
Query: 304 ELVADVAPSSIRES-------RKICIDASMSLYQFLIAVRSEGNQLMSVDGEPTSHLMGT 356
+L+AD+AP +IRES RK+ IDASM LYQFLIAVRSEG QL +V+G+PTSHLMG
Sbjct: 8 KLIADLAPQAIRESEMKHFFGRKVAIDASMCLYQFLIAVRSEGAQLATVNGDPTSHLMGM 67
Query: 357 FYRTIRLVEHGLKPIYVFDGKPPTLKSGELNKRMEKREDAQKALAKAQEQGKLKWSDPDE 416
FYRTIRL+++G+KP+YVFDGKPP LKSGEL KR E+RE+A+KAL A + G D+
Sbjct: 68 FYRTIRLLDNGIKPVYVFDGKPPDLKSGELAKRAERREEAEKALKAATDAG-------DD 120
Query: 417 DGLVKY 422
G+ K+
Sbjct: 121 AGIEKF 126
Score = 119 bits (299), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 63/130 (48%), Positives = 85/130 (65%), Gaps = 5/130 (3%)
Query: 232 FIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGWLYKEAREL 291
FIDLCILLGCDYC+SI+GIGPKRAIELI +R IE IL+N+D+ KYTVPE W YK AREL
Sbjct: 223 FIDLCILLGCDYCESIKGIGPKRAIELINTYRDIETILDNLDSSKYTVPENWNYKVAREL 282
Query: 292 FRHPEIADPETIELVADVAPSSIRESRKICIDASMSLYQFLIAVRSEGNQLMSVDGEPTS 351
F PE+A+ ++I+L V P + +C D + + VR+ +LM T
Sbjct: 283 FIEPEVANADSIDLKW-VEPDEEGLVKFLCGDRQFNEER----VRNGAKKLMKSKQAQTQ 337
Query: 352 HLMGTFYRTI 361
+ +F++T+
Sbjct: 338 VRLDSFFKTL 347
Score = 79.7 bits (195), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 39/75 (52%), Positives = 51/75 (68%), Gaps = 7/75 (9%)
Query: 1 MTLKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSSTTQGRLDSFFTIRREEKRK 60
+ LKW +PDE+GLVK+LCGD+ F E+R+RNGAKKL+K++ + TQ RLDSFF +
Sbjct: 294 IDLKWVEPDEEGLVKFLCGDRQFNEERVRNGAKKLMKSKQAQTQVRLDSFF-------KT 346
Query: 61 APCEAEAQCAAMVKA 75
P A AA KA
Sbjct: 347 LPSTPNATNAAKRKA 361
Score = 78.6 bits (192), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 33/49 (67%), Positives = 42/49 (85%)
Query: 409 LKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSTTTQGRLDSFF 457
LKW +PDE+GLVK+LCGD+ F E+R+RNGAKKL+K++ TQ RLDSFF
Sbjct: 296 LKWVEPDEEGLVKFLCGDRQFNEERVRNGAKKLMKSKQAQTQVRLDSFF 344
>gi|82231650|sp|Q5I4H3.1|FEN1_XIPMA RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|57639537|gb|AAW55636.1| flap endonuclease-1 [Xiphophorus maculatus]
gi|57639539|gb|AAW55637.1| flap endonuclease-1 [Xiphophorus maculatus]
Length = 380
Score = 222 bits (565), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 99/142 (69%), Positives = 120/142 (84%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVLE 120
APCEAEA CAA+VK GKV+ATATEDMD LTFG+N+LLRH+T SEA+KLPVQEFH ++L+
Sbjct: 155 APCEAEASCAALVKEGKVFATATEDMDGLTFGTNVLLRHLTASEAKKLPVQEFHFNRILQ 214
Query: 121 GMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGW 180
+ L+ E+FIDLCILLGCDYC +I+GIGPKRAI+LI++H SIE+ILENIDT K+ PE W
Sbjct: 215 DIGLTSEQFIDLCILLGCDYCGTIKGIGPKRAIDLIRQHGSIEEILENIDTSKHPAPEDW 274
Query: 181 LYKEARELFRHPEVADPETIEF 202
LYKEAR LF PEV D T++
Sbjct: 275 LYKEARNLFLKPEVVDSSTVDL 296
Score = 145 bits (367), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 76/125 (60%), Positives = 92/125 (73%), Gaps = 7/125 (5%)
Query: 304 ELVADVAPSSIRE-------SRKICIDASMSLYQFLIAVRSEGNQLMSVDGEPTSHLMGT 356
+L+AD AP +I+E RKI IDASM +YQFLIAVR +GN L S DGE TSHLMG
Sbjct: 8 KLIADHAPGAIKEQDIKNYFGRKIAIDASMCIYQFLIAVRQDGNVLQSEDGETTSHLMGM 67
Query: 357 FYRTIRLVEHGLKPIYVFDGKPPTLKSGELNKRMEKREDAQKALAKAQEQGKLKWSDPDE 416
FYRTIR++E+G+KP+YVFDGKPP LKS EL KR E+R +A+K LAKAQE G+ + D
Sbjct: 68 FYRTIRMLENGIKPVYVFDGKPPQLKSAELEKRGERRAEAEKMLAKAQELGEQENIDKFS 127
Query: 417 DGLVK 421
LVK
Sbjct: 128 KRLVK 132
Score = 120 bits (300), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 52/74 (70%), Positives = 62/74 (83%)
Query: 232 FIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGWLYKEAREL 291
FIDLCILLGCDYC +I+GIGPKRAI+LI++H SIE+ILENIDT K+ PE WLYKEAR L
Sbjct: 223 FIDLCILLGCDYCGTIKGIGPKRAIDLIRQHGSIEEILENIDTSKHPAPEDWLYKEARNL 282
Query: 292 FRHPEIADPETIEL 305
F PE+ D T++L
Sbjct: 283 FLKPEVVDSSTVDL 296
Score = 79.7 bits (195), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 34/62 (54%), Positives = 48/62 (77%), Gaps = 2/62 (3%)
Query: 3 LKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSSTTQGRLDSFFTIRR--EEKRK 60
LKW +PDE+ L++++C +K F+EDRIRNG KK++K+R +TQGRLDSFF++ KRK
Sbjct: 296 LKWREPDEEALIQFMCSEKQFSEDRIRNGCKKMMKSRQGSTQGRLDSFFSVTGSLSSKRK 355
Query: 61 AP 62
P
Sbjct: 356 EP 357
Score = 77.8 bits (190), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 30/51 (58%), Positives = 44/51 (86%)
Query: 409 LKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSTTTQGRLDSFFTI 459
LKW +PDE+ L++++C +K F+EDRIRNG KK++K+R +TQGRLDSFF++
Sbjct: 296 LKWREPDEEALIQFMCSEKQFSEDRIRNGCKKMMKSRQGSTQGRLDSFFSV 346
>gi|49619155|gb|AAT68162.1| flap structure specific endonuclease 1 [Danio rerio]
Length = 380
Score = 221 bits (564), Expect = 5e-55, Method: Compositional matrix adjust.
Identities = 99/142 (69%), Positives = 120/142 (84%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVLE 120
APCEAEA CAA+VKAGKVYATATEDM LTFG+ +LLRH+T SEA+KLP+QEFH ++L+
Sbjct: 155 APCEAEASCAALVKAGKVYATATEDMAGLTFGTTVLLRHLTASEAKKLPIQEFHFSRILQ 214
Query: 121 GMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGW 180
MEL+H++FIDLCILLGCDYC +I+GIGPKRAI+LIK+H SIE+ILENID K+ PE W
Sbjct: 215 DMELTHQQFIDLCILLGCDYCGTIKGIGPKRAIDLIKQHGSIEEILENIDPNKHRAPEDW 274
Query: 181 LYKEARELFRHPEVADPETIEF 202
LYKEAR LF PEV D +++
Sbjct: 275 LYKEARGLFLEPEVVDGTSVDL 296
Score = 148 bits (374), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 76/125 (60%), Positives = 94/125 (75%), Gaps = 7/125 (5%)
Query: 304 ELVADVAPSSIRE-------SRKICIDASMSLYQFLIAVRSEGNQLMSVDGEPTSHLMGT 356
+L+AD APS+I+E RKI IDASM +YQFLIAVR +GN L + DGE TSHLMG
Sbjct: 8 KLIADHAPSAIKEHEIKSYFGRKIAIDASMCIYQFLIAVRQDGNVLQNEDGETTSHLMGM 67
Query: 357 FYRTIRLVEHGLKPIYVFDGKPPTLKSGELNKRMEKREDAQKALAKAQEQGKLKWSDPDE 416
FYRTIR++E G+KP+YVFDGKPP LKSGEL KR+E+R +A+K LA+AQE G+ + D
Sbjct: 68 FYRTIRMLESGIKPVYVFDGKPPQLKSGELEKRVERRAEAEKLLAQAQEAGEQENIDKFS 127
Query: 417 DGLVK 421
LVK
Sbjct: 128 KRLVK 132
Score = 116 bits (290), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 51/74 (68%), Positives = 61/74 (82%)
Query: 232 FIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGWLYKEAREL 291
FIDLCILLGCDYC +I+GIGPKRAI+LIK+H SIE+ILENID K+ PE WLYKEAR L
Sbjct: 223 FIDLCILLGCDYCGTIKGIGPKRAIDLIKQHGSIEEILENIDPNKHRAPEDWLYKEARGL 282
Query: 292 FRHPEIADPETIEL 305
F PE+ D +++L
Sbjct: 283 FLEPEVVDGTSVDL 296
Score = 84.3 bits (207), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 36/62 (58%), Positives = 49/62 (79%), Gaps = 2/62 (3%)
Query: 3 LKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSSTTQGRLDSFFTIRR--EEKRK 60
LKW++PDEDGL++++C +K F+EDRIRNG KK+ K+R +TQGRLD+FFT+ KRK
Sbjct: 296 LKWNEPDEDGLIQFMCAEKQFSEDRIRNGCKKITKSRQGSTQGRLDTFFTVTGSISSKRK 355
Query: 61 AP 62
P
Sbjct: 356 EP 357
Score = 82.4 bits (202), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 32/51 (62%), Positives = 45/51 (88%)
Query: 409 LKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSTTTQGRLDSFFTI 459
LKW++PDEDGL++++C +K F+EDRIRNG KK+ K+R +TQGRLD+FFT+
Sbjct: 296 LKWNEPDEDGLIQFMCAEKQFSEDRIRNGCKKITKSRQGSTQGRLDTFFTV 346
>gi|449283444|gb|EMC90086.1| Flap endonuclease 1 [Columba livia]
Length = 382
Score = 221 bits (562), Expect = 9e-55, Method: Compositional matrix adjust.
Identities = 97/142 (68%), Positives = 123/142 (86%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVLE 120
AP EAEA CAA+VKAGKVYA ATEDMD LTFGS +L+RH+T SE +KLP+QEFHL ++L+
Sbjct: 155 APGEAEASCAALVKAGKVYAAATEDMDCLTFGSPVLMRHLTASETKKLPIQEFHLNRILQ 214
Query: 121 GMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGW 180
+ L+ E+F+DLCILLGCDYC+SIRGIGPKRA+ELIKEH++IEKI++ IDTKKY +PE W
Sbjct: 215 DLGLTWEQFVDLCILLGCDYCESIRGIGPKRAVELIKEHKTIEKIVQQIDTKKYPLPENW 274
Query: 181 LYKEARELFRHPEVADPETIEF 202
L+KEA++LF P+V DP+ +E
Sbjct: 275 LHKEAQKLFLEPDVVDPDAVEL 296
Score = 143 bits (360), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 70/111 (63%), Positives = 85/111 (76%), Gaps = 7/111 (6%)
Query: 304 ELVADVAPSSIRES-------RKICIDASMSLYQFLIAVRSEGNQLMSVDGEPTSHLMGT 356
+L+ADVAP +IRE+ RK+ IDASMS+YQFLIAVR L + +GE TSHLMG
Sbjct: 8 KLIADVAPGAIRENDIKSYFGRKVAIDASMSIYQFLIAVRQGAEVLQNEEGETTSHLMGM 67
Query: 357 FYRTIRLVEHGLKPIYVFDGKPPTLKSGELNKRMEKREDAQKALAKAQEQG 407
FYRTIR+VE G+KP+YVFDGKPP LKSGEL KR E+R +A+K L +AQE G
Sbjct: 68 FYRTIRMVESGIKPVYVFDGKPPQLKSGELAKRTERRAEAEKHLQEAQEAG 118
Score = 126 bits (316), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 52/74 (70%), Positives = 67/74 (90%)
Query: 232 FIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGWLYKEAREL 291
F+DLCILLGCDYC+SIRGIGPKRA+ELIKEH++IEKI++ IDTKKY +PE WL+KEA++L
Sbjct: 223 FVDLCILLGCDYCESIRGIGPKRAVELIKEHKTIEKIVQQIDTKKYPLPENWLHKEAQKL 282
Query: 292 FRHPEIADPETIEL 305
F P++ DP+ +EL
Sbjct: 283 FLEPDVVDPDAVEL 296
Score = 79.7 bits (195), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 41/85 (48%), Positives = 57/85 (67%), Gaps = 6/85 (7%)
Query: 3 LKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSSTTQGRLDSFFTIR---REEKR 59
LKW++P+E+ LV+++CG+K F E+RIRNG K+L K+R +TQGRLD FF + KR
Sbjct: 296 LKWTEPNEEELVRFMCGEKQFNEERIRNGVKRLSKSRQGSTQGRLDDFFKVTGSITSAKR 355
Query: 60 KAPCEAEAQCAAMVKAGKVYATATE 84
K P E + +A KA ATAT+
Sbjct: 356 KEP---ETKGSAKKKAKTNNATATK 377
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 29/51 (56%), Positives = 42/51 (82%)
Query: 409 LKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSTTTQGRLDSFFTI 459
LKW++P+E+ LV+++CG+K F E+RIRNG K+L K+R +TQGRLD FF +
Sbjct: 296 LKWTEPNEEELVRFMCGEKQFNEERIRNGVKRLSKSRQGSTQGRLDDFFKV 346
>gi|432927428|ref|XP_004081007.1| PREDICTED: flap endonuclease 1-like [Oryzias latipes]
Length = 380
Score = 219 bits (559), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 97/142 (68%), Positives = 122/142 (85%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVLE 120
APCEAEA CAA+VK GKV+ATATEDMD LTFG+N+LLRH+T SEA+KLP+QEFH ++L+
Sbjct: 155 APCEAEASCAALVKEGKVFATATEDMDGLTFGTNVLLRHLTASEAKKLPIQEFHFNRILQ 214
Query: 121 GMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGW 180
M+L+ E+FIDLCILLGCDYC +I+GIGPKRA++LI++H IE+ILENID+KK++ PE W
Sbjct: 215 DMDLTKEQFIDLCILLGCDYCGTIKGIGPKRAVDLIRQHGCIEEILENIDSKKHSAPEDW 274
Query: 181 LYKEARELFRHPEVADPETIEF 202
LYKEAR LF PEV D ++E
Sbjct: 275 LYKEARGLFLKPEVVDCSSVEL 296
Score = 147 bits (371), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 72/111 (64%), Positives = 87/111 (78%), Gaps = 7/111 (6%)
Query: 304 ELVADVAPSSIRE-------SRKICIDASMSLYQFLIAVRSEGNQLMSVDGEPTSHLMGT 356
+L+AD APS+I+E RKI IDASM +YQFLIAVR +GN L + DGE TSHLMG
Sbjct: 8 KLIADHAPSAIKEQDIKSYFGRKIAIDASMCMYQFLIAVRQDGNVLQNEDGETTSHLMGM 67
Query: 357 FYRTIRLVEHGLKPIYVFDGKPPTLKSGELNKRMEKREDAQKALAKAQEQG 407
FYRTIR++EHG+KP+YVFDGKPP LKS EL KR E+R +A+K LA+AQE G
Sbjct: 68 FYRTIRMLEHGIKPVYVFDGKPPQLKSSELEKRGERRAEAEKLLAQAQEMG 118
Score = 115 bits (289), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 50/74 (67%), Positives = 63/74 (85%)
Query: 232 FIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGWLYKEAREL 291
FIDLCILLGCDYC +I+GIGPKRA++LI++H IE+ILENID+KK++ PE WLYKEAR L
Sbjct: 223 FIDLCILLGCDYCGTIKGIGPKRAVDLIRQHGCIEEILENIDSKKHSAPEDWLYKEARGL 282
Query: 292 FRHPEIADPETIEL 305
F PE+ D ++EL
Sbjct: 283 FLKPEVVDCSSVEL 296
Score = 86.7 bits (213), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 38/76 (50%), Positives = 56/76 (73%), Gaps = 7/76 (9%)
Query: 3 LKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSSTTQGRLDSFFTI-------RR 55
LKW++PDE+GLV+++C +K F+EDRIRNG KK++K+R +TQGRLDSFFT+ R+
Sbjct: 296 LKWNEPDEEGLVQFMCNEKQFSEDRIRNGCKKIVKSRQGSTQGRLDSFFTVTGSLSSKRK 355
Query: 56 EEKRKAPCEAEAQCAA 71
E + K P + + + A
Sbjct: 356 EPETKGPAKKKQKTGA 371
Score = 82.8 bits (203), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 33/51 (64%), Positives = 46/51 (90%)
Query: 409 LKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSTTTQGRLDSFFTI 459
LKW++PDE+GLV+++C +K F+EDRIRNG KK++K+R +TQGRLDSFFT+
Sbjct: 296 LKWNEPDEEGLVQFMCNEKQFSEDRIRNGCKKIVKSRQGSTQGRLDSFFTV 346
>gi|148234716|ref|NP_001080984.1| flap endonuclease 1-B [Xenopus laevis]
gi|82071413|sp|P70054.1|FEN1B_XENLA RecName: Full=Flap endonuclease 1-B; Short=FEN-1-B; AltName:
Full=Flap structure-specific endonuclease 1-B;
Short=xFEN-1b
gi|1549393|gb|AAB08478.1| XFEN1b [Xenopus laevis]
gi|213623174|gb|AAI69390.1| Flap endonuclease 1 [Xenopus laevis]
gi|213626408|gb|AAI69394.1| Flap endonuclease 1 [Xenopus laevis]
Length = 382
Score = 219 bits (559), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 96/142 (67%), Positives = 123/142 (86%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVLE 120
APCEAEA CAA+VKAGKVYA ATEDMDALTFG+ +LLRH+T SEA+KLP+QEFHL +V +
Sbjct: 155 APCEAEATCAALVKAGKVYAAATEDMDALTFGTPVLLRHLTASEAKKLPIQEFHLNRVFQ 214
Query: 121 GMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGW 180
+ ++HE+F+DLCILLG DYC++IRGIGPKRAI+LI++H++IE+I++NID KKY +PE W
Sbjct: 215 DIGINHEQFVDLCILLGSDYCETIRGIGPKRAIDLIRQHKTIEEIIDNIDLKKYPIPENW 274
Query: 181 LYKEARELFRHPEVADPETIEF 202
L+KEAR+LF PEV D + E
Sbjct: 275 LHKEARQLFLEPEVIDADITEL 296
Score = 139 bits (350), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 64/104 (61%), Positives = 83/104 (79%), Gaps = 7/104 (6%)
Query: 304 ELVADVAPSSIRE-------SRKICIDASMSLYQFLIAVRSEGNQLMSVDGEPTSHLMGT 356
+L+ADVAP++I+E RK+ +DASM +YQFLIAVR +GN L + +GE TSHLMG
Sbjct: 8 KLIADVAPAAIKEHDIKSYFGRKVAVDASMCIYQFLIAVRQDGNMLQNEEGETTSHLMGM 67
Query: 357 FYRTIRLVEHGLKPIYVFDGKPPTLKSGELNKRMEKREDAQKAL 400
FYRTIR++EHG+KP+YVFDGKPP +KSGEL KR E+R +A+K L
Sbjct: 68 FYRTIRMLEHGIKPVYVFDGKPPQMKSGELAKRSERRAEAEKLL 111
Score = 115 bits (289), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 48/74 (64%), Positives = 64/74 (86%)
Query: 232 FIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGWLYKEAREL 291
F+DLCILLG DYC++IRGIGPKRAI+LI++H++IE+I++NID KKY +PE WL+KEAR+L
Sbjct: 223 FVDLCILLGSDYCETIRGIGPKRAIDLIRQHKTIEEIIDNIDLKKYPIPENWLHKEARQL 282
Query: 292 FRHPEIADPETIEL 305
F PE+ D + EL
Sbjct: 283 FLEPEVIDADITEL 296
Score = 83.2 bits (204), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 34/51 (66%), Positives = 43/51 (84%)
Query: 3 LKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSSTTQGRLDSFFTI 53
LKW++PDE+GLV ++CG+K F+EDRIRNGAKKL K R +TQGRLD FF +
Sbjct: 296 LKWTEPDEEGLVAFMCGEKQFSEDRIRNGAKKLAKNRQGSTQGRLDDFFKV 346
Score = 82.4 bits (202), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 34/51 (66%), Positives = 43/51 (84%)
Query: 409 LKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSTTTQGRLDSFFTI 459
LKW++PDE+GLV ++CG+K F+EDRIRNGAKKL K R +TQGRLD FF +
Sbjct: 296 LKWTEPDEEGLVAFMCGEKQFSEDRIRNGAKKLAKNRQGSTQGRLDDFFKV 346
>gi|2674207|gb|AAB88707.1| flap endonuclease 1 [Xenopus laevis]
gi|115528353|gb|AAI24978.1| Fen1-A protein [Xenopus laevis]
Length = 382
Score = 218 bits (555), Expect = 6e-54, Method: Compositional matrix adjust.
Identities = 95/142 (66%), Positives = 123/142 (86%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVLE 120
APCEAEA CAA+VKAGKVYA ATEDMDALTFG+ +LLRH+T SEA+KLP+QEFHL +V++
Sbjct: 155 APCEAEATCAALVKAGKVYAAATEDMDALTFGTPVLLRHLTASEAKKLPIQEFHLNRVIQ 214
Query: 121 GMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGW 180
+ ++HE+F+DLCILLG DYC++IRGIGPKRAI+LI++H++I++I++NID KKY VPE W
Sbjct: 215 DIGITHEQFVDLCILLGSDYCETIRGIGPKRAIDLIRQHKTIDEIIDNIDLKKYPVPENW 274
Query: 181 LYKEARELFRHPEVADPETIEF 202
L+KEA+ LF PEV D + E
Sbjct: 275 LHKEAKHLFLEPEVVDTDITEL 296
Score = 141 bits (355), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 66/104 (63%), Positives = 83/104 (79%), Gaps = 7/104 (6%)
Query: 304 ELVADVAPSSIRE-------SRKICIDASMSLYQFLIAVRSEGNQLMSVDGEPTSHLMGT 356
+L+ADVAP++I+E RK+ IDASM +YQFLIAVR +GN L + +GE TSHLMG
Sbjct: 8 KLIADVAPAAIKEHDIKSYFGRKVAIDASMCIYQFLIAVRQDGNTLQNEEGETTSHLMGM 67
Query: 357 FYRTIRLVEHGLKPIYVFDGKPPTLKSGELNKRMEKREDAQKAL 400
FYRTIR+VEHG+KP+YVFDGKPP +KSGEL KR E+R +A+K L
Sbjct: 68 FYRTIRMVEHGIKPVYVFDGKPPQMKSGELAKRSERRAEAEKLL 111
Score = 114 bits (284), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 47/74 (63%), Positives = 63/74 (85%)
Query: 232 FIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGWLYKEAREL 291
F+DLCILLG DYC++IRGIGPKRAI+LI++H++I++I++NID KKY VPE WL+KEA+ L
Sbjct: 223 FVDLCILLGSDYCETIRGIGPKRAIDLIRQHKTIDEIIDNIDLKKYPVPENWLHKEAKHL 282
Query: 292 FRHPEIADPETIEL 305
F PE+ D + EL
Sbjct: 283 FLEPEVVDTDITEL 296
Score = 81.6 bits (200), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 34/51 (66%), Positives = 42/51 (82%)
Query: 3 LKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSSTTQGRLDSFFTI 53
LKW +PDE+GLV ++CG+K F+EDRIRNGAKKL K R +TQGRLD FF +
Sbjct: 296 LKWIEPDEEGLVAFMCGEKQFSEDRIRNGAKKLAKNRQGSTQGRLDDFFKV 346
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 34/51 (66%), Positives = 42/51 (82%)
Query: 409 LKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSTTTQGRLDSFFTI 459
LKW +PDE+GLV ++CG+K F+EDRIRNGAKKL K R +TQGRLD FF +
Sbjct: 296 LKWIEPDEEGLVAFMCGEKQFSEDRIRNGAKKLAKNRQGSTQGRLDDFFKV 346
>gi|148230426|ref|NP_001080960.1| flap endonuclease 1-A [Xenopus laevis]
gi|82071385|sp|P70040.1|FEN1A_XENLA RecName: Full=Flap endonuclease 1-A; Short=FEN-1-A; AltName:
Full=Flap structure-specific endonuclease 1-A;
Short=xFEN-1a
gi|1490870|gb|AAB06176.1| 5' nuclease xFEN1a [Xenopus laevis]
gi|4106358|gb|AAD02814.1| flap endonuclease 1 [Xenopus laevis]
gi|213623454|gb|AAI69765.1| 5' nuclease xFEN1a [Xenopus laevis]
gi|213625072|gb|AAI69761.1| 5' nuclease xFEN1a [Xenopus laevis]
Length = 382
Score = 218 bits (555), Expect = 6e-54, Method: Compositional matrix adjust.
Identities = 95/142 (66%), Positives = 123/142 (86%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVLE 120
APCEAEA CAA+VKAGKVYA ATEDMDALTFG+ +LLRH+T SEA+KLP+QEFHL +V++
Sbjct: 155 APCEAEATCAALVKAGKVYAAATEDMDALTFGTPVLLRHLTASEAKKLPIQEFHLNRVIQ 214
Query: 121 GMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGW 180
+ ++HE+F+DLCILLG DYC++IRGIGPKRAI+LI++H++I++I++NID KKY VPE W
Sbjct: 215 DIGITHEQFVDLCILLGSDYCETIRGIGPKRAIDLIRQHKTIDEIIDNIDLKKYPVPENW 274
Query: 181 LYKEARELFRHPEVADPETIEF 202
L+KEA+ LF PEV D + E
Sbjct: 275 LHKEAKHLFLEPEVVDTDITEL 296
Score = 140 bits (353), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 65/104 (62%), Positives = 83/104 (79%), Gaps = 7/104 (6%)
Query: 304 ELVADVAPSSIRE-------SRKICIDASMSLYQFLIAVRSEGNQLMSVDGEPTSHLMGT 356
+L+ADVAP++I+E RK+ +DASM +YQFLIAVR +GN L + +GE TSHLMG
Sbjct: 8 KLIADVAPAAIKEHDIKSYFGRKVAVDASMCIYQFLIAVRQDGNTLQNEEGETTSHLMGM 67
Query: 357 FYRTIRLVEHGLKPIYVFDGKPPTLKSGELNKRMEKREDAQKAL 400
FYRTIR+VEHG+KP+YVFDGKPP +KSGEL KR E+R +A+K L
Sbjct: 68 FYRTIRMVEHGIKPVYVFDGKPPQMKSGELAKRSERRAEAEKLL 111
Score = 114 bits (284), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 47/74 (63%), Positives = 63/74 (85%)
Query: 232 FIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGWLYKEAREL 291
F+DLCILLG DYC++IRGIGPKRAI+LI++H++I++I++NID KKY VPE WL+KEA+ L
Sbjct: 223 FVDLCILLGSDYCETIRGIGPKRAIDLIRQHKTIDEIIDNIDLKKYPVPENWLHKEAKHL 282
Query: 292 FRHPEIADPETIEL 305
F PE+ D + EL
Sbjct: 283 FLEPEVVDTDITEL 296
Score = 81.6 bits (200), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 34/51 (66%), Positives = 42/51 (82%)
Query: 3 LKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSSTTQGRLDSFFTI 53
LKW +PDE+GLV ++CG+K F+EDRIRNGAKKL K R +TQGRLD FF +
Sbjct: 296 LKWIEPDEEGLVAFMCGEKQFSEDRIRNGAKKLAKNRQGSTQGRLDDFFKV 346
Score = 80.9 bits (198), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 34/51 (66%), Positives = 42/51 (82%)
Query: 409 LKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSTTTQGRLDSFFTI 459
LKW +PDE+GLV ++CG+K F+EDRIRNGAKKL K R +TQGRLD FF +
Sbjct: 296 LKWIEPDEEGLVAFMCGEKQFSEDRIRNGAKKLAKNRQGSTQGRLDDFFKV 346
>gi|358333862|dbj|GAA32436.2| flap endonuclease-1 [Clonorchis sinensis]
Length = 350
Score = 217 bits (553), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 98/143 (68%), Positives = 121/143 (84%)
Query: 60 KAPCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVL 119
KAP EAEAQCAA+ KAGKVYA TEDMDAL FG +LLRH+TFSEARKLP+QEF+L VL
Sbjct: 118 KAPGEAEAQCAALAKAGKVYAVGTEDMDALAFGCPVLLRHLTFSEARKLPIQEFNLPSVL 177
Query: 120 EGMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEG 179
G+ELS ++F+DLCILLGCDY D+IRGIGPK+AI+L+++H+SIE++L+NID KY VPE
Sbjct: 178 AGLELSMDQFVDLCILLGCDYVDTIRGIGPKKAIDLLRKHKSIEEVLKNIDHSKYPVPEE 237
Query: 180 WLYKEARELFRHPEVADPETIEF 202
W Y+EA++LF PE+ DPE IE
Sbjct: 238 WPYEEAKKLFVTPEIEDPEKIEI 260
Score = 115 bits (288), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 49/74 (66%), Positives = 64/74 (86%)
Query: 232 FIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGWLYKEAREL 291
F+DLCILLGCDY D+IRGIGPK+AI+L+++H+SIE++L+NID KY VPE W Y+EA++L
Sbjct: 187 FVDLCILLGCDYVDTIRGIGPKKAIDLLRKHKSIEEVLKNIDHSKYPVPEEWPYEEAKKL 246
Query: 292 FRHPEIADPETIEL 305
F PEI DPE IE+
Sbjct: 247 FVTPEIEDPEKIEI 260
Score = 112 bits (281), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 48/75 (64%), Positives = 65/75 (86%)
Query: 326 MSLYQFLIAVRSEGNQLMSVDGEPTSHLMGTFYRTIRLVEHGLKPIYVFDGKPPTLKSGE 385
MS+YQFLIAVR EG+ LM+ +GE TSHLMG FYRTIR++E+G+KP+YVF+GKPP++K+GE
Sbjct: 1 MSIYQFLIAVRQEGSTLMNSEGESTSHLMGMFYRTIRMIENGIKPVYVFEGKPPSMKAGE 60
Query: 386 LNKRMEKREDAQKAL 400
L KR E+R ++ + L
Sbjct: 61 LAKRTERRIESSREL 75
Score = 79.7 bits (195), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 33/53 (62%), Positives = 45/53 (84%)
Query: 405 EQGKLKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSTTTQGRLDSFF 457
E+ ++KWS+PDE+GLV +LC F E+R+RNGAKKL+KA++T TQGR+DSFF
Sbjct: 256 EKIEIKWSEPDEEGLVAFLCHKHGFNEERVRNGAKKLMKAKNTNTQGRIDSFF 308
Score = 77.8 bits (190), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 31/49 (63%), Positives = 42/49 (85%)
Query: 3 LKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSSTTQGRLDSFF 51
+KWS+PDE+GLV +LC F E+R+RNGAKKL+KA+++ TQGR+DSFF
Sbjct: 260 IKWSEPDEEGLVAFLCHKHGFNEERVRNGAKKLMKAKNTNTQGRIDSFF 308
>gi|224050601|ref|XP_002192880.1| PREDICTED: flap endonuclease 1 [Taeniopygia guttata]
Length = 386
Score = 217 bits (553), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 100/171 (58%), Positives = 134/171 (78%), Gaps = 1/171 (0%)
Query: 32 AKKLLKARSSTTQGRLDSFFTIRREEKRKAPCEAEAQCAAMVKAGKVYATATEDMDALTF 91
+K+L+K TQ T+ +AP EAEA CAA+VKAGKVYA ATEDMD LTF
Sbjct: 127 SKRLVKVTPQHTQ-ECKKLLTLMGIPYVEAPGEAEASCAALVKAGKVYAAATEDMDCLTF 185
Query: 92 GSNILLRHMTFSEARKLPVQEFHLEKVLEGMELSHEEFIDLCILLGCDYCDSIRGIGPKR 151
GS +L+RH+T SE +KLP+QEFHL ++L+ ++L+ E+F+DLCILLGCDYC SIRGIGPKR
Sbjct: 186 GSPVLMRHLTASETKKLPIQEFHLNRILQDLQLTWEQFVDLCILLGCDYCASIRGIGPKR 245
Query: 152 AIELIKEHRSIEKILENIDTKKYTVPEGWLYKEARELFRHPEVADPETIEF 202
A+ELI+EH+SIE+I++ +DTKKY +PE WL++EA++LF P+V DP+ +E
Sbjct: 246 AVELIREHKSIERIVQQLDTKKYPLPENWLHREAQKLFLEPDVIDPDAVEL 296
Score = 138 bits (348), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 67/104 (64%), Positives = 82/104 (78%), Gaps = 7/104 (6%)
Query: 304 ELVADVAPSSIRES-------RKICIDASMSLYQFLIAVRSEGNQLMSVDGEPTSHLMGT 356
+L+ADVAP +IRE+ RK+ IDASMS+YQFLIAVR + L + DGE TSHLMG
Sbjct: 8 KLIADVAPGAIRENDIKAYFGRKVAIDASMSIYQFLIAVRQGADVLQNEDGETTSHLMGM 67
Query: 357 FYRTIRLVEHGLKPIYVFDGKPPTLKSGELNKRMEKREDAQKAL 400
FYRTIR+VE+G+KP+YVFDGKPP LKSGEL KR E+R +A+K L
Sbjct: 68 FYRTIRMVENGIKPVYVFDGKPPQLKSGELAKRTERRAEAEKHL 111
Score = 120 bits (302), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 49/74 (66%), Positives = 66/74 (89%)
Query: 232 FIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGWLYKEAREL 291
F+DLCILLGCDYC SIRGIGPKRA+ELI+EH+SIE+I++ +DTKKY +PE WL++EA++L
Sbjct: 223 FVDLCILLGCDYCASIRGIGPKRAVELIREHKSIERIVQQLDTKKYPLPENWLHREAQKL 282
Query: 292 FRHPEIADPETIEL 305
F P++ DP+ +EL
Sbjct: 283 FLEPDVIDPDAVEL 296
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 35/63 (55%), Positives = 46/63 (73%), Gaps = 3/63 (4%)
Query: 3 LKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSSTTQGRLDSFFTIR---REEKR 59
LKWS+PDE+ LV+++CG+K F E+RIRNG K+L K+R +TQGRLD FF + KR
Sbjct: 296 LKWSEPDEEQLVQFMCGEKQFNEERIRNGVKRLSKSRQGSTQGRLDDFFKVTGSITSAKR 355
Query: 60 KAP 62
K P
Sbjct: 356 KEP 358
Score = 75.9 bits (185), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 31/52 (59%), Positives = 43/52 (82%)
Query: 408 KLKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSTTTQGRLDSFFTI 459
+LKWS+PDE+ LV+++CG+K F E+RIRNG K+L K+R +TQGRLD FF +
Sbjct: 295 ELKWSEPDEEQLVQFMCGEKQFNEERIRNGVKRLSKSRQGSTQGRLDDFFKV 346
>gi|351699147|gb|EHB02066.1| Flap endonuclease 1 [Heterocephalus glaber]
Length = 380
Score = 217 bits (552), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 95/142 (66%), Positives = 121/142 (85%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVLE 120
AP EAEA CAA+VKAGKVYA ATEDMD LTFGS +L+RH+T SEARKLP+QEFHL ++L+
Sbjct: 155 APSEAEASCAALVKAGKVYAAATEDMDCLTFGSPVLMRHLTASEARKLPIQEFHLSRILQ 214
Query: 121 GMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGW 180
+ L+ E+F+DLCILLG DYC+SIRGIGPKRA++LI++H+SIE+I+ +D KY VPE W
Sbjct: 215 ALNLTQEQFVDLCILLGSDYCESIRGIGPKRAVDLIQKHKSIEEIVRRLDPSKYPVPENW 274
Query: 181 LYKEARELFRHPEVADPETIEF 202
L+KEA++LF PEV DPE++E
Sbjct: 275 LHKEAQQLFLEPEVLDPESVEL 296
Score = 138 bits (347), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 66/99 (66%), Positives = 79/99 (79%), Gaps = 7/99 (7%)
Query: 304 ELVADVAPSSIRES-------RKICIDASMSLYQFLIAVRSEGNQLMSVDGEPTSHLMGT 356
+L+ADVAPS+IRE+ RK+ IDASMS+YQFLIAVR G L S +GE TSHLMG
Sbjct: 8 KLIADVAPSAIRENDIKSYFGRKVAIDASMSIYQFLIAVRQGGETLQSEEGETTSHLMGM 67
Query: 357 FYRTIRLVEHGLKPIYVFDGKPPTLKSGELNKRMEKRED 395
FYRTIR++EHG+KP+YVFDGKPP LKSGEL KR E+R +
Sbjct: 68 FYRTIRMMEHGIKPVYVFDGKPPQLKSGELAKRSERRAE 106
Score = 116 bits (290), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 48/74 (64%), Positives = 64/74 (86%)
Query: 232 FIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGWLYKEAREL 291
F+DLCILLG DYC+SIRGIGPKRA++LI++H+SIE+I+ +D KY VPE WL+KEA++L
Sbjct: 223 FVDLCILLGSDYCESIRGIGPKRAVDLIQKHKSIEEIVRRLDPSKYPVPENWLHKEAQQL 282
Query: 292 FRHPEIADPETIEL 305
F PE+ DPE++EL
Sbjct: 283 FLEPEVLDPESVEL 296
Score = 75.5 bits (184), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 34/63 (53%), Positives = 46/63 (73%), Gaps = 3/63 (4%)
Query: 3 LKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSSTTQGRLDSFFTIR---REEKR 59
LKWS+P+E+ LVK+LCG+K F+E+RIR G ++L K+R +TQGRLD FF + KR
Sbjct: 296 LKWSEPNEEELVKFLCGEKQFSEERIRGGVRRLSKSRQGSTQGRLDDFFKVTGSLSSAKR 355
Query: 60 KAP 62
K P
Sbjct: 356 KEP 358
Score = 74.7 bits (182), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 31/55 (56%), Positives = 44/55 (80%)
Query: 405 EQGKLKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSTTTQGRLDSFFTI 459
E +LKWS+P+E+ LVK+LCG+K F+E+RIR G ++L K+R +TQGRLD FF +
Sbjct: 292 ESVELKWSEPNEEELVKFLCGEKQFSEERIRGGVRRLSKSRQGSTQGRLDDFFKV 346
>gi|196004300|ref|XP_002112017.1| hypothetical protein TRIADDRAFT_24563 [Trichoplax adhaerens]
gi|317376198|sp|B3RVF0.1|FEN1_TRIAD RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|190585916|gb|EDV25984.1| hypothetical protein TRIADDRAFT_24563 [Trichoplax adhaerens]
Length = 377
Score = 216 bits (551), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 96/143 (67%), Positives = 124/143 (86%)
Query: 60 KAPCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVL 119
+APCEAE+QCAA+VKAGKVYAT TEDMDALTFGSN++LRH+TFSEARK+P+QEFHL+ L
Sbjct: 154 QAPCEAESQCAALVKAGKVYATGTEDMDALTFGSNVMLRHLTFSEARKMPIQEFHLKNAL 213
Query: 120 EGMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEG 179
+ + S E+FIDLCILLGCDYCDSI+G+GPKRA+ LI++++SIE I++NI ++K+TVPE
Sbjct: 214 QELNFSMEQFIDLCILLGCDYCDSIKGVGPKRAVGLIEKYKSIEDIVKNISSEKFTVPEN 273
Query: 180 WLYKEARELFRHPEVADPETIEF 202
W YK+AR LF +P+V E +E
Sbjct: 274 WPYKDARMLFLNPDVEKCEDMEL 296
Score = 145 bits (366), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 69/111 (62%), Positives = 91/111 (81%), Gaps = 7/111 (6%)
Query: 304 ELVADVAPSSIRES-------RKICIDASMSLYQFLIAVRSEGNQLMSVDGEPTSHLMGT 356
+L+AD APS+I+E+ RK+ IDASMS+YQFLIAVRS+GN L + GE TSHLMG
Sbjct: 8 KLIADHAPSAIKENEIKNYFGRKVAIDASMSIYQFLIAVRSDGNVLTNEAGETTSHLMGL 67
Query: 357 FYRTIRLVEHGLKPIYVFDGKPPTLKSGELNKRMEKREDAQKALAKAQEQG 407
FYRTIR++E+G+KP+YVFDGKPP LKSGEL +R E+RE+AQK ++A+++G
Sbjct: 68 FYRTIRMMENGIKPVYVFDGKPPRLKSGELARRQERREEAQKQASEAEKEG 118
Score = 107 bits (267), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 49/82 (59%), Positives = 67/82 (81%), Gaps = 3/82 (3%)
Query: 227 ELLYS---FIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGW 283
EL +S FIDLCILLGCDYCDSI+G+GPKRA+ LI++++SIE I++NI ++K+TVPE W
Sbjct: 215 ELNFSMEQFIDLCILLGCDYCDSIKGVGPKRAVGLIEKYKSIEDIVKNISSEKFTVPENW 274
Query: 284 LYKEARELFRHPEIADPETIEL 305
YK+AR LF +P++ E +EL
Sbjct: 275 PYKDARMLFLNPDVEKCEDMEL 296
Score = 77.8 bits (190), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 35/55 (63%), Positives = 44/55 (80%)
Query: 405 EQGKLKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSTTTQGRLDSFFTI 459
E +LKW++PD D LVK+L +K F+EDRIR G +K+ KAR T+TQGRLDSFFTI
Sbjct: 292 EDMELKWTEPDADELVKFLVEEKGFSEDRIRRGVEKISKARGTSTQGRLDSFFTI 346
Score = 77.8 bits (190), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 34/53 (64%), Positives = 43/53 (81%)
Query: 1 MTLKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSSTTQGRLDSFFTI 53
M LKW++PD D LVK+L +K F+EDRIR G +K+ KAR ++TQGRLDSFFTI
Sbjct: 294 MELKWTEPDADELVKFLVEEKGFSEDRIRRGVEKISKARGTSTQGRLDSFFTI 346
>gi|317376191|sp|B9EMY6.1|FEN1_SALSA RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|221220444|gb|ACM08883.1| Flap endonuclease 1-B [Salmo salar]
gi|221221934|gb|ACM09628.1| Flap endonuclease 1-B [Salmo salar]
Length = 380
Score = 216 bits (551), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 96/142 (67%), Positives = 120/142 (84%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVLE 120
APCEAEA CAA+VKAGKV+ATATEDMD LTFG+ +LLRH+T SEA+KLP+QEF ++L+
Sbjct: 155 APCEAEASCAALVKAGKVFATATEDMDGLTFGTGVLLRHLTASEAKKLPIQEFQFTRLLQ 214
Query: 121 GMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGW 180
+ L+HE+FIDLCILLGCDYC +I+GIGPKRAI+LI++H SIE+ILENID+ K+ PE W
Sbjct: 215 DINLTHEQFIDLCILLGCDYCGTIKGIGPKRAIDLIRQHGSIEEILENIDSSKHPAPEDW 274
Query: 181 LYKEARELFRHPEVADPETIEF 202
LYKEAR LF P+V D T++
Sbjct: 275 LYKEARGLFLQPDVVDCSTVDL 296
Score = 148 bits (374), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 75/125 (60%), Positives = 94/125 (75%), Gaps = 7/125 (5%)
Query: 304 ELVADVAPSSIRE-------SRKICIDASMSLYQFLIAVRSEGNQLMSVDGEPTSHLMGT 356
+L+AD APS+I+E RKI IDASM +YQFL+AVR +GN L + +GE TSHLMG
Sbjct: 8 KLIADQAPSAIKEQDIKNYFGRKIAIDASMCMYQFLVAVRQDGNVLQNENGETTSHLMGM 67
Query: 357 FYRTIRLVEHGLKPIYVFDGKPPTLKSGELNKRMEKREDAQKALAKAQEQGKLKWSDPDE 416
FYRTIR++EHG+KP+YVFDGKPP LKSGEL KR E+R +A+K LA+AQE G+ + D
Sbjct: 68 FYRTIRMLEHGIKPVYVFDGKPPQLKSGELEKRGERRAEAEKLLAQAQEAGEQENIDKFS 127
Query: 417 DGLVK 421
LVK
Sbjct: 128 KRLVK 132
Score = 115 bits (288), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 50/74 (67%), Positives = 62/74 (83%)
Query: 232 FIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGWLYKEAREL 291
FIDLCILLGCDYC +I+GIGPKRAI+LI++H SIE+ILENID+ K+ PE WLYKEAR L
Sbjct: 223 FIDLCILLGCDYCGTIKGIGPKRAIDLIRQHGSIEEILENIDSSKHPAPEDWLYKEARGL 282
Query: 292 FRHPEIADPETIEL 305
F P++ D T++L
Sbjct: 283 FLQPDVVDCSTVDL 296
Score = 84.0 bits (206), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 37/62 (59%), Positives = 49/62 (79%), Gaps = 2/62 (3%)
Query: 3 LKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSSTTQGRLDSFFTI--RREEKRK 60
LKWS+PDED L++++C +K F+EDRI+NG KK+LK+R +TQGRLD+FFTI KRK
Sbjct: 296 LKWSEPDEDALIQFMCAEKQFSEDRIKNGCKKILKSRQGSTQGRLDTFFTITGSLSSKRK 355
Query: 61 AP 62
P
Sbjct: 356 EP 357
Score = 82.0 bits (201), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 33/51 (64%), Positives = 45/51 (88%)
Query: 409 LKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSTTTQGRLDSFFTI 459
LKWS+PDED L++++C +K F+EDRI+NG KK+LK+R +TQGRLD+FFTI
Sbjct: 296 LKWSEPDEDALIQFMCAEKQFSEDRIKNGCKKILKSRQGSTQGRLDTFFTI 346
>gi|15778123|dbj|BAB68507.1| FEN-1 nuclease [Gallus gallus]
Length = 381
Score = 216 bits (551), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 95/142 (66%), Positives = 124/142 (87%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVLE 120
AP EAEA CA +VKAGKVYA ATEDMD LTFGS +L+RH+T SEA+KLP+QEFHL +VL+
Sbjct: 155 APGEAEASCATLVKAGKVYAAATEDMDCLTFGSPVLMRHLTASEAKKLPIQEFHLNRVLQ 214
Query: 121 GMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGW 180
+ L+ E+F+DLCILLGCDYC+SIRGIGPKRA+ELIK+H++IE+I+++IDTKKY +PE W
Sbjct: 215 DLGLTWEQFVDLCILLGCDYCESIRGIGPKRAVELIKQHKTIEEIIQHIDTKKYPLPENW 274
Query: 181 LYKEARELFRHPEVADPETIEF 202
L+KEA++LF P+V +P+ +E
Sbjct: 275 LHKEAQKLFLEPDVINPDDVEL 296
Score = 141 bits (355), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 69/110 (62%), Positives = 85/110 (77%), Gaps = 7/110 (6%)
Query: 305 LVADVAPSSIRES-------RKICIDASMSLYQFLIAVRSEGNQLMSVDGEPTSHLMGTF 357
L+A+ APS+IRE+ RK+ IDASMS+YQFLIAVR L + +GE TSHLMG F
Sbjct: 9 LIAERAPSAIRENDIKSYFGRKVAIDASMSIYQFLIAVRQGAEVLQNEEGETTSHLMGMF 68
Query: 358 YRTIRLVEHGLKPIYVFDGKPPTLKSGELNKRMEKREDAQKALAKAQEQG 407
YRTIR+VE+G+KP+YVFDGKPP LKSGEL KR E+R +A+K L +AQE G
Sbjct: 69 YRTIRMVENGIKPVYVFDGKPPQLKSGELAKRTERRSEAEKHLQEAQEAG 118
Score = 121 bits (303), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 49/74 (66%), Positives = 68/74 (91%)
Query: 232 FIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGWLYKEAREL 291
F+DLCILLGCDYC+SIRGIGPKRA+ELIK+H++IE+I+++IDTKKY +PE WL+KEA++L
Sbjct: 223 FVDLCILLGCDYCESIRGIGPKRAVELIKQHKTIEEIIQHIDTKKYPLPENWLHKEAQKL 282
Query: 292 FRHPEIADPETIEL 305
F P++ +P+ +EL
Sbjct: 283 FLEPDVINPDDVEL 296
Score = 77.8 bits (190), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 40/83 (48%), Positives = 55/83 (66%), Gaps = 6/83 (7%)
Query: 3 LKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSSTTQGRLDSFFTIR---REEKR 59
LKW++P+E+ LV+++CG+K F E+RIRNG K+L K+R +TQGRLD FF + KR
Sbjct: 296 LKWTEPNEEELVQFMCGEKQFNEERIRNGVKRLSKSRQGSTQGRLDDFFKVTGSITSAKR 355
Query: 60 KAPCEAEAQCAAMVKAGKVYATA 82
K P E + +A KA ATA
Sbjct: 356 KEP---ETKGSAKKKAKTNSATA 375
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 29/51 (56%), Positives = 42/51 (82%)
Query: 409 LKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSTTTQGRLDSFFTI 459
LKW++P+E+ LV+++CG+K F E+RIRNG K+L K+R +TQGRLD FF +
Sbjct: 296 LKWTEPNEEELVQFMCGEKQFNEERIRNGVKRLSKSRQGSTQGRLDDFFKV 346
>gi|317374918|sp|C1BM18.1|FEN1_OSMMO RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|225708450|gb|ACO10071.1| Flap endonuclease 1-B [Osmerus mordax]
Length = 380
Score = 216 bits (551), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 96/136 (70%), Positives = 118/136 (86%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVLE 120
APCEAEA CAA+VKAGKV+ATATEDMD LTFG+ +LLRH+T SEA+KLP+QEFH ++L+
Sbjct: 155 APCEAEASCAALVKAGKVFATATEDMDGLTFGTGVLLRHLTASEAKKLPIQEFHFSRILQ 214
Query: 121 GMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGW 180
+ LSHE+FIDLCILLGCDYC +I+GIGPKRA++LI++H SIE+IL+NID K+ VPE W
Sbjct: 215 DIGLSHEQFIDLCILLGCDYCGTIKGIGPKRAMDLIRQHGSIEEILDNIDLSKHPVPEDW 274
Query: 181 LYKEARELFRHPEVAD 196
LYKEAR LF P+V D
Sbjct: 275 LYKEARGLFLTPDVVD 290
Score = 145 bits (367), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 75/125 (60%), Positives = 93/125 (74%), Gaps = 7/125 (5%)
Query: 304 ELVADVAPSSIRE-------SRKICIDASMSLYQFLIAVRSEGNQLMSVDGEPTSHLMGT 356
+L+AD AP +I+E RKI IDASM +YQFLIAVR +GN L + DGE TSHLMG
Sbjct: 8 KLIADQAPGAIKEQEMKNFFGRKIAIDASMCIYQFLIAVRQDGNVLQNEDGETTSHLMGM 67
Query: 357 FYRTIRLVEHGLKPIYVFDGKPPTLKSGELNKRMEKREDAQKALAKAQEQGKLKWSDPDE 416
FYRTIR++E+G+KP+YVFDGKPP LKSGEL KR E+R +A+K LA+AQE G+ + D
Sbjct: 68 FYRTIRMLENGIKPVYVFDGKPPQLKSGELEKRGERRAEAEKLLAQAQEAGEQENIDKFS 127
Query: 417 DGLVK 421
LVK
Sbjct: 128 KRLVK 132
Score = 110 bits (276), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 49/74 (66%), Positives = 61/74 (82%)
Query: 232 FIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGWLYKEAREL 291
FIDLCILLGCDYC +I+GIGPKRA++LI++H SIE+IL+NID K+ VPE WLYKEAR L
Sbjct: 223 FIDLCILLGCDYCGTIKGIGPKRAMDLIRQHGSIEEILDNIDLSKHPVPEDWLYKEARGL 282
Query: 292 FRHPEIADPETIEL 305
F P++ D +EL
Sbjct: 283 FLTPDVVDCSCLEL 296
Score = 84.7 bits (208), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 37/64 (57%), Positives = 51/64 (79%), Gaps = 2/64 (3%)
Query: 1 MTLKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSSTTQGRLDSFFTI--RREEK 58
+ LKWS+PDE+GLV+++C +K F+EDR+RNG KK+LK+R +TQGRLDSFF++ K
Sbjct: 294 LELKWSEPDEEGLVQFMCAEKQFSEDRMRNGCKKILKSRQGSTQGRLDSFFSVTGSLSSK 353
Query: 59 RKAP 62
RK P
Sbjct: 354 RKEP 357
Score = 82.4 bits (202), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 33/51 (64%), Positives = 46/51 (90%)
Query: 409 LKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSTTTQGRLDSFFTI 459
LKWS+PDE+GLV+++C +K F+EDR+RNG KK+LK+R +TQGRLDSFF++
Sbjct: 296 LKWSEPDEEGLVQFMCAEKQFSEDRMRNGCKKILKSRQGSTQGRLDSFFSV 346
>gi|118405170|ref|NP_001072959.1| flap endonuclease 1 [Gallus gallus]
gi|82082625|sp|Q5ZLN4.1|FEN1_CHICK RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|53129083|emb|CAG31359.1| hypothetical protein RCJMB04_5g12 [Gallus gallus]
Length = 381
Score = 216 bits (550), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 95/142 (66%), Positives = 124/142 (87%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVLE 120
AP EAEA CA +VKAGKVYA ATEDMD LTFGS +L+RH+T SEA+KLP+QEFHL +VL+
Sbjct: 155 APGEAEASCATLVKAGKVYAAATEDMDCLTFGSPVLMRHLTASEAKKLPIQEFHLNRVLQ 214
Query: 121 GMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGW 180
+ L+ E+F+DLCILLGCDYC+SIRGIGPKRA+ELIK+H++IE+I+++IDTKKY +PE W
Sbjct: 215 DLGLTWEQFVDLCILLGCDYCESIRGIGPKRAVELIKQHKTIEEIIQHIDTKKYPLPENW 274
Query: 181 LYKEARELFRHPEVADPETIEF 202
L+KEA++LF P+V +P+ +E
Sbjct: 275 LHKEAQKLFLEPDVINPDDVEL 296
Score = 145 bits (367), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 71/111 (63%), Positives = 87/111 (78%), Gaps = 7/111 (6%)
Query: 304 ELVADVAPSSIRES-------RKICIDASMSLYQFLIAVRSEGNQLMSVDGEPTSHLMGT 356
+L+ADVAPS+IRE+ RK+ IDASMS+YQFLIAVR L + +GE TSHLMG
Sbjct: 8 KLIADVAPSAIRENDIKSYFGRKVAIDASMSIYQFLIAVRQGAEVLQNEEGETTSHLMGM 67
Query: 357 FYRTIRLVEHGLKPIYVFDGKPPTLKSGELNKRMEKREDAQKALAKAQEQG 407
FYRTIR+VE+G+KP+YVFDGKPP LKSGEL KR E+R +A+K L +AQE G
Sbjct: 68 FYRTIRMVENGIKPVYVFDGKPPQLKSGELAKRTERRSEAEKHLQEAQEAG 118
Score = 121 bits (303), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 49/74 (66%), Positives = 68/74 (91%)
Query: 232 FIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGWLYKEAREL 291
F+DLCILLGCDYC+SIRGIGPKRA+ELIK+H++IE+I+++IDTKKY +PE WL+KEA++L
Sbjct: 223 FVDLCILLGCDYCESIRGIGPKRAVELIKQHKTIEEIIQHIDTKKYPLPENWLHKEAQKL 282
Query: 292 FRHPEIADPETIEL 305
F P++ +P+ +EL
Sbjct: 283 FLEPDVINPDDVEL 296
Score = 77.8 bits (190), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 40/83 (48%), Positives = 55/83 (66%), Gaps = 6/83 (7%)
Query: 3 LKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSSTTQGRLDSFFTIR---REEKR 59
LKW++P+E+ LV+++CG+K F E+RIRNG K+L K+R +TQGRLD FF + KR
Sbjct: 296 LKWTEPNEEELVQFMCGEKQFNEERIRNGVKRLSKSRQGSTQGRLDDFFKVTGSITSAKR 355
Query: 60 KAPCEAEAQCAAMVKAGKVYATA 82
K P E + +A KA ATA
Sbjct: 356 KEP---ETKGSAKKKAKTNSATA 375
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 29/51 (56%), Positives = 42/51 (82%)
Query: 409 LKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSTTTQGRLDSFFTI 459
LKW++P+E+ LV+++CG+K F E+RIRNG K+L K+R +TQGRLD FF +
Sbjct: 296 LKWTEPNEEELVQFMCGEKQFNEERIRNGVKRLSKSRQGSTQGRLDDFFKV 346
>gi|326429821|gb|EGD75391.1| flap endonuclease-1 [Salpingoeca sp. ATCC 50818]
Length = 380
Score = 216 bits (550), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 103/144 (71%), Positives = 122/144 (84%), Gaps = 2/144 (1%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVLE 120
APCEAEAQCA +VKAGKV+ATATEDMDALTFG+++LLRHMTFSEARK+P+Q+F L+KVLE
Sbjct: 155 APCEAEAQCAELVKAGKVFATATEDMDALTFGTSVLLRHMTFSEARKMPIQQFELKKVLE 214
Query: 121 GMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENI--DTKKYTVPE 178
G++LS +EFIDLCILLGCDYCD I GIG RA LIKEH SIE ILE I + KKYTVP+
Sbjct: 215 GLDLSQDEFIDLCILLGCDYCDKIGGIGRVRAYSLIKEHHSIEAILEAIKKEKKKYTVPD 274
Query: 179 GWLYKEARELFRHPEVADPETIEF 202
W + EARELF++PEVA + I+
Sbjct: 275 DWKFAEARELFKNPEVAPAKDIDL 298
Score = 138 bits (348), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 65/111 (58%), Positives = 85/111 (76%), Gaps = 7/111 (6%)
Query: 304 ELVADVAPSSIRES-------RKICIDASMSLYQFLIAVRSEGNQLMSVDGEPTSHLMGT 356
+++ D A +++E+ RK+ IDASMS+YQFLIAVRSEG+ L + +GE TSHL G
Sbjct: 8 KVIGDNASHAVKETEMKNLFGRKVAIDASMSIYQFLIAVRSEGSNLTNAEGETTSHLSGI 67
Query: 357 FYRTIRLVEHGLKPIYVFDGKPPTLKSGELNKRMEKREDAQKALAKAQEQG 407
FYRTIR+V +G+KP+YVFDGKPPTLKSGEL KR E+R++AQ L A E+G
Sbjct: 68 FYRTIRMVNNGVKPVYVFDGKPPTLKSGELAKRTERRKEAQSKLEAATEEG 118
Score = 102 bits (255), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 50/76 (65%), Positives = 58/76 (76%), Gaps = 2/76 (2%)
Query: 232 FIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENI--DTKKYTVPEGWLYKEAR 289
FIDLCILLGCDYCD I GIG RA LIKEH SIE ILE I + KKYTVP+ W + EAR
Sbjct: 223 FIDLCILLGCDYCDKIGGIGRVRAYSLIKEHHSIEAILEAIKKEKKKYTVPDDWKFAEAR 282
Query: 290 ELFRHPEIADPETIEL 305
ELF++PE+A + I+L
Sbjct: 283 ELFKNPEVAPAKDIDL 298
Score = 72.4 bits (176), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 32/51 (62%), Positives = 39/51 (76%)
Query: 409 LKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSTTTQGRLDSFFTI 459
LKW+ PD D LV ++C F E RIR GA+KL+KARST+TQGRLDSFF +
Sbjct: 298 LKWNIPDVDKLVDFMCNKHGFEEGRIRRGAEKLVKARSTSTQGRLDSFFKV 348
Score = 71.2 bits (173), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 31/53 (58%), Positives = 40/53 (75%)
Query: 1 MTLKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSSTTQGRLDSFFTI 53
+ LKW+ PD D LV ++C F E RIR GA+KL+KARS++TQGRLDSFF +
Sbjct: 296 IDLKWNIPDVDKLVDFMCNKHGFEEGRIRRGAEKLVKARSTSTQGRLDSFFKV 348
>gi|341882587|gb|EGT38522.1| hypothetical protein CAEBREN_12338 [Caenorhabditis brenneri]
gi|341895701|gb|EGT51636.1| hypothetical protein CAEBREN_24192 [Caenorhabditis brenneri]
Length = 382
Score = 216 bits (550), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 96/142 (67%), Positives = 119/142 (83%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVLE 120
APCEAEAQCA +VKAGKV+ TATEDMDALTFGS++LLRH+ E++K+P++EFHL +VLE
Sbjct: 155 APCEAEAQCAHLVKAGKVFGTATEDMDALTFGSSVLLRHLLAPESKKIPIKEFHLARVLE 214
Query: 121 GMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGW 180
M+LS +EFIDLCILLGCDYC +IRG+GPK+A+ELI++H++IE +LENID KY PE W
Sbjct: 215 EMKLSEDEFIDLCILLGCDYCGTIRGVGPKKAVELIRQHKNIETVLENIDQTKYPPPEDW 274
Query: 181 LYKEARELFRHPEVADPETIEF 202
YK ARELFR PEV E +E
Sbjct: 275 PYKRARELFREPEVTKGEDVEL 296
Score = 148 bits (374), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 73/125 (58%), Positives = 97/125 (77%), Gaps = 7/125 (5%)
Query: 304 ELVADVAPSSIRES-------RKICIDASMSLYQFLIAVRSEGNQLMSVDGEPTSHLMGT 356
+++AD APS+I+ + RK+ IDASM LYQFLIAVR +G+QL S DGE TSHLMG
Sbjct: 8 QVIADNAPSAIKVNEIKAFFGRKVAIDASMCLYQFLIAVRQDGSQLQSEDGETTSHLMGM 67
Query: 357 FYRTIRLVEHGLKPIYVFDGKPPTLKSGELNKRMEKREDAQKALAKAQEQGKLKWSDPDE 416
FYRTIR++++G+KP+YVFDGKPP +KSGEL KR E+R +A+KAL +A+E+G K ++ E
Sbjct: 68 FYRTIRMIDNGIKPVYVFDGKPPDMKSGELEKRSERRAEAEKALTEAKEKGDAKEAEKFE 127
Query: 417 DGLVK 421
LVK
Sbjct: 128 RRLVK 132
Score = 115 bits (289), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 49/75 (65%), Positives = 60/75 (80%)
Query: 232 FIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGWLYKEAREL 291
FIDLCILLGCDYC +IRG+GPK+A+ELI++H++IE +LENID KY PE W YK AREL
Sbjct: 223 FIDLCILLGCDYCGTIRGVGPKKAVELIRQHKNIETVLENIDQTKYPPPEDWPYKRAREL 282
Query: 292 FRHPEIADPETIELV 306
FR PE+ E +EL
Sbjct: 283 FREPEVTKGEDVELT 297
Score = 75.9 bits (185), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 34/70 (48%), Positives = 51/70 (72%), Gaps = 6/70 (8%)
Query: 3 LKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSSTTQGRLDSFFTIRRE------ 56
L W +PD +G+VK++CGDKNF+E+RIR+ ++ K+R++ TQGR+DSFF++ +
Sbjct: 296 LTWKEPDVEGIVKFMCGDKNFSEERIRSALTRMQKSRNAGTQGRIDSFFSVSTQVKCVTA 355
Query: 57 EKRKAPCEAE 66
KRKA EAE
Sbjct: 356 AKRKAQEEAE 365
Score = 73.6 bits (179), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 52/74 (70%)
Query: 405 EQGKLKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSTTTQGRLDSFFTIRREEK 464
E +L W +PD +G+VK++CGDKNF+E+RIR+ ++ K+R+ TQGR+DSFF++ + K
Sbjct: 292 EDVELTWKEPDVEGIVKFMCGDKNFSEERIRSALTRMQKSRNAGTQGRIDSFFSVSTQVK 351
Query: 465 RKSRCQYQCQYQCQ 478
+ + + Q + +
Sbjct: 352 CVTAAKRKAQEEAE 365
>gi|317419778|emb|CBN81814.1| Flap endonuclease 1-B [Dicentrarchus labrax]
Length = 380
Score = 216 bits (550), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 98/142 (69%), Positives = 120/142 (84%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVLE 120
APCEAEA CAA+VKAGKV+ATATEDMD LTFG+N+LLRH+T SEA+KLP+QEFH ++L+
Sbjct: 155 APCEAEATCAALVKAGKVFATATEDMDGLTFGTNVLLRHLTASEAKKLPIQEFHFSRMLQ 214
Query: 121 GMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGW 180
+ L++E+FIDLCILLGCDYC +I+GIGPKRAI+LI++H IE+ILENID K+ PE W
Sbjct: 215 DIGLTNEQFIDLCILLGCDYCATIKGIGPKRAIDLIRQHGCIEEILENIDPNKHPSPEDW 274
Query: 181 LYKEARELFRHPEVADPETIEF 202
LYKEAR LF PEV D T+E
Sbjct: 275 LYKEARRLFLKPEVVDCSTVEL 296
Score = 146 bits (368), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 75/125 (60%), Positives = 92/125 (73%), Gaps = 7/125 (5%)
Query: 304 ELVADVAPSSIRE-------SRKICIDASMSLYQFLIAVRSEGNQLMSVDGEPTSHLMGT 356
+L+AD AP +I+E RKI IDASM +YQFLIAVR +GN L + DGE TSHLMG
Sbjct: 8 KLIADHAPGAIKEQDIKNYFGRKIAIDASMCIYQFLIAVRQDGNVLQNEDGETTSHLMGM 67
Query: 357 FYRTIRLVEHGLKPIYVFDGKPPTLKSGELNKRMEKREDAQKALAKAQEQGKLKWSDPDE 416
FYRTIR++EHG+KP+YVFDGKPP LKS EL KR E+R +A+K LA+AQE G+ + D
Sbjct: 68 FYRTIRMLEHGIKPVYVFDGKPPQLKSAELEKRGERRAEAEKLLAQAQEMGEQENIDKFS 127
Query: 417 DGLVK 421
LVK
Sbjct: 128 KRLVK 132
Score = 113 bits (282), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 51/74 (68%), Positives = 60/74 (81%)
Query: 232 FIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGWLYKEAREL 291
FIDLCILLGCDYC +I+GIGPKRAI+LI++H IE+ILENID K+ PE WLYKEAR L
Sbjct: 223 FIDLCILLGCDYCATIKGIGPKRAIDLIRQHGCIEEILENIDPNKHPSPEDWLYKEARRL 282
Query: 292 FRHPEIADPETIEL 305
F PE+ D T+EL
Sbjct: 283 FLKPEVVDCSTVEL 296
Score = 84.3 bits (207), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 37/62 (59%), Positives = 49/62 (79%), Gaps = 2/62 (3%)
Query: 3 LKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSSTTQGRLDSFFTI--RREEKRK 60
LKWS+PDED L++++C +K F+EDR+RNG KK++K+R +TQGRLDSFFTI KRK
Sbjct: 296 LKWSEPDEDALIQFMCNEKQFSEDRMRNGCKKIMKSRQGSTQGRLDSFFTITGSLSSKRK 355
Query: 61 AP 62
P
Sbjct: 356 EP 357
Score = 82.4 bits (202), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 33/51 (64%), Positives = 45/51 (88%)
Query: 409 LKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSTTTQGRLDSFFTI 459
LKWS+PDED L++++C +K F+EDR+RNG KK++K+R +TQGRLDSFFTI
Sbjct: 296 LKWSEPDEDALIQFMCNEKQFSEDRMRNGCKKIMKSRQGSTQGRLDSFFTI 346
>gi|410974093|ref|XP_003993482.1| PREDICTED: flap endonuclease 1 [Felis catus]
Length = 380
Score = 215 bits (547), Expect = 5e-53, Method: Compositional matrix adjust.
Identities = 95/142 (66%), Positives = 122/142 (85%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVLE 120
AP EAEA CAA+VKAGKVYA ATEDMD LTFGS +L+RH+T SEA+KLP+QEFHL +VL+
Sbjct: 155 APSEAEASCAALVKAGKVYAAATEDMDCLTFGSPVLMRHLTASEAKKLPIQEFHLSRVLQ 214
Query: 121 GMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGW 180
+ L+ E+F+DLCILLG DYC+SIRGIGPKRA++LI++H+SIE+I+ +D KY+VPE W
Sbjct: 215 ELGLNQEQFVDLCILLGSDYCESIRGIGPKRAVDLIQKHKSIEEIVRRLDPSKYSVPENW 274
Query: 181 LYKEARELFRHPEVADPETIEF 202
L+KEA++LF PEV DPE++E
Sbjct: 275 LHKEAQQLFLEPEVLDPESVEL 296
Score = 137 bits (345), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 65/102 (63%), Positives = 82/102 (80%), Gaps = 7/102 (6%)
Query: 304 ELVADVAPSSIRES-------RKICIDASMSLYQFLIAVRSEGNQLMSVDGEPTSHLMGT 356
+L+ADVAP +IRE+ RK+ IDASMS+YQFLIAVR G+ L + +GE TSHLMG
Sbjct: 8 KLIADVAPGAIRENDIKSYFGRKVAIDASMSIYQFLIAVRQGGDVLQNEEGETTSHLMGM 67
Query: 357 FYRTIRLVEHGLKPIYVFDGKPPTLKSGELNKRMEKREDAQK 398
FYRTIR++E+G+KP+YVFDGKPP LKSGEL KR E+R +A+K
Sbjct: 68 FYRTIRMMENGIKPVYVFDGKPPQLKSGELAKRSERRAEAEK 109
Score = 117 bits (293), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 48/74 (64%), Positives = 65/74 (87%)
Query: 232 FIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGWLYKEAREL 291
F+DLCILLG DYC+SIRGIGPKRA++LI++H+SIE+I+ +D KY+VPE WL+KEA++L
Sbjct: 223 FVDLCILLGSDYCESIRGIGPKRAVDLIQKHKSIEEIVRRLDPSKYSVPENWLHKEAQQL 282
Query: 292 FRHPEIADPETIEL 305
F PE+ DPE++EL
Sbjct: 283 FLEPEVLDPESVEL 296
Score = 75.5 bits (184), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 34/77 (44%), Positives = 53/77 (68%), Gaps = 8/77 (10%)
Query: 3 LKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSSTTQGRLDSFFTI--------R 54
LKWS+P+E+ LVK++CG+K F+E+RIR+G ++L K+R +TQGRLD FF + R
Sbjct: 296 LKWSEPNEEELVKFMCGEKQFSEERIRSGVRRLSKSRQGSTQGRLDDFFKVTGSLSSAKR 355
Query: 55 REEKRKAPCEAEAQCAA 71
+E + K + +A+ A
Sbjct: 356 KEPEPKGSAKKKAKTGA 372
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 30/55 (54%), Positives = 45/55 (81%)
Query: 405 EQGKLKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSTTTQGRLDSFFTI 459
E +LKWS+P+E+ LVK++CG+K F+E+RIR+G ++L K+R +TQGRLD FF +
Sbjct: 292 ESVELKWSEPNEEELVKFMCGEKQFSEERIRSGVRRLSKSRQGSTQGRLDDFFKV 346
>gi|444513068|gb|ELV10260.1| Flap endonuclease 1 [Tupaia chinensis]
Length = 380
Score = 215 bits (547), Expect = 5e-53, Method: Compositional matrix adjust.
Identities = 95/142 (66%), Positives = 121/142 (85%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVLE 120
AP EAEA CAA+VKAGKVYA ATEDMD LTFGS +L+RH+T SEA+KLP+QEFHL ++L+
Sbjct: 155 APSEAEASCAALVKAGKVYAAATEDMDCLTFGSPVLMRHLTASEAKKLPIQEFHLSRILQ 214
Query: 121 GMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGW 180
+ LS E+F+DLCILLG DYC+SIRGIGPKRA++LI++H+SIE+I+ +D KY VPE W
Sbjct: 215 ELGLSQEQFVDLCILLGSDYCESIRGIGPKRAVDLIQKHKSIEEIVRRLDPNKYPVPENW 274
Query: 181 LYKEARELFRHPEVADPETIEF 202
L+KEA++LF PEV DPE++E
Sbjct: 275 LHKEAQQLFLEPEVLDPESVEL 296
Score = 134 bits (336), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 63/99 (63%), Positives = 80/99 (80%), Gaps = 7/99 (7%)
Query: 304 ELVADVAPSSIRES-------RKICIDASMSLYQFLIAVRSEGNQLMSVDGEPTSHLMGT 356
+L+ADVAPS+IRE+ RK+ IDASMS+YQFLIAVR G+ L + +G+ TSHLMG
Sbjct: 8 KLIADVAPSAIRENDIKSYFGRKVAIDASMSIYQFLIAVRQGGDMLQNEEGDTTSHLMGM 67
Query: 357 FYRTIRLVEHGLKPIYVFDGKPPTLKSGELNKRMEKRED 395
FYRTIR++E+G+KP+YVFDGKPP LKSGEL KR E+R +
Sbjct: 68 FYRTIRMMENGIKPVYVFDGKPPQLKSGELAKRSERRAE 106
Score = 116 bits (291), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 48/74 (64%), Positives = 64/74 (86%)
Query: 232 FIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGWLYKEAREL 291
F+DLCILLG DYC+SIRGIGPKRA++LI++H+SIE+I+ +D KY VPE WL+KEA++L
Sbjct: 223 FVDLCILLGSDYCESIRGIGPKRAVDLIQKHKSIEEIVRRLDPNKYPVPENWLHKEAQQL 282
Query: 292 FRHPEIADPETIEL 305
F PE+ DPE++EL
Sbjct: 283 FLEPEVLDPESVEL 296
Score = 76.3 bits (186), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 38/83 (45%), Positives = 56/83 (67%), Gaps = 11/83 (13%)
Query: 3 LKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSSTTQGRLDSFFTI--------R 54
LKWS+P+E+ LVK++CG+K F+E+RIR+G K+L K+R +TQGRLD FF + R
Sbjct: 296 LKWSEPNEEELVKFMCGEKQFSEERIRSGVKRLSKSRQGSTQGRLDDFFKVTGSLSSAKR 355
Query: 55 REEKRKAPCEAEAQCAAMVKAGK 77
+E + K + +A+ A AGK
Sbjct: 356 KEPEPKGSTKKKAKTGA---AGK 375
Score = 74.7 bits (182), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 31/55 (56%), Positives = 45/55 (81%)
Query: 405 EQGKLKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSTTTQGRLDSFFTI 459
E +LKWS+P+E+ LVK++CG+K F+E+RIR+G K+L K+R +TQGRLD FF +
Sbjct: 292 ESVELKWSEPNEEELVKFMCGEKQFSEERIRSGVKRLSKSRQGSTQGRLDDFFKV 346
>gi|344258300|gb|EGW14404.1| Flap endonuclease 1 [Cricetulus griseus]
Length = 412
Score = 215 bits (547), Expect = 5e-53, Method: Compositional matrix adjust.
Identities = 95/142 (66%), Positives = 121/142 (85%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVLE 120
AP EAEA CAA+VKAGKVYA ATEDMD LTFGS +L+RH+T SEA+KLP+QEFHL +VL+
Sbjct: 187 APSEAEASCAALVKAGKVYAAATEDMDCLTFGSPVLMRHLTASEAKKLPIQEFHLSRVLQ 246
Query: 121 GMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGW 180
+ L+ E+F+DLCILLG DYC+SIRGIGPKRA++LI++H+SIE+I+ +D KY VPE W
Sbjct: 247 ELGLNQEQFVDLCILLGSDYCESIRGIGPKRAVDLIQKHKSIEEIVRRLDPNKYPVPENW 306
Query: 181 LYKEARELFRHPEVADPETIEF 202
L+KEA++LF PEV DPE++E
Sbjct: 307 LHKEAQQLFLEPEVLDPESVEL 328
Score = 147 bits (371), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 71/110 (64%), Positives = 88/110 (80%), Gaps = 7/110 (6%)
Query: 305 LVADVAPSSIRES-------RKICIDASMSLYQFLIAVRSEGNQLMSVDGEPTSHLMGTF 357
L+ADVAPS+IRE+ RK+ IDASMS+YQFLIAVR G+ L + +GE TSHLMG F
Sbjct: 9 LIADVAPSAIRENDIKSYFGRKVAIDASMSIYQFLIAVRQGGDVLQNEEGETTSHLMGMF 68
Query: 358 YRTIRLVEHGLKPIYVFDGKPPTLKSGELNKRMEKREDAQKALAKAQEQG 407
YRTIR++E+G+KP+YVFDGKPP LKSGEL KR E+R +A+K L +AQE G
Sbjct: 69 YRTIRMMENGIKPVYVFDGKPPQLKSGELAKRSERRAEAEKQLQQAQEAG 118
Score = 117 bits (293), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 48/74 (64%), Positives = 64/74 (86%)
Query: 232 FIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGWLYKEAREL 291
F+DLCILLG DYC+SIRGIGPKRA++LI++H+SIE+I+ +D KY VPE WL+KEA++L
Sbjct: 255 FVDLCILLGSDYCESIRGIGPKRAVDLIQKHKSIEEIVRRLDPNKYPVPENWLHKEAQQL 314
Query: 292 FRHPEIADPETIEL 305
F PE+ DPE++EL
Sbjct: 315 FLEPEVLDPESVEL 328
Score = 76.6 bits (187), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 34/65 (52%), Positives = 48/65 (73%), Gaps = 3/65 (4%)
Query: 1 MTLKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSSTTQGRLDSFFTIR---REE 57
+ LKWS+P+E+ LVK++CG+K F+E+RIR+G K+L K+R +TQGRLD FF +
Sbjct: 326 VELKWSEPNEEELVKFMCGEKQFSEERIRSGVKRLSKSRQGSTQGRLDDFFKVTGSLSSA 385
Query: 58 KRKAP 62
KRK P
Sbjct: 386 KRKEP 390
Score = 75.9 bits (185), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 31/55 (56%), Positives = 45/55 (81%)
Query: 405 EQGKLKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSTTTQGRLDSFFTI 459
E +LKWS+P+E+ LVK++CG+K F+E+RIR+G K+L K+R +TQGRLD FF +
Sbjct: 324 ESVELKWSEPNEEELVKFMCGEKQFSEERIRSGVKRLSKSRQGSTQGRLDDFFKV 378
>gi|16758170|ref|NP_445882.1| flap endonuclease 1 [Rattus norvegicus]
gi|8896169|gb|AAF81265.1|AF281018_1 flag structure-specific endonuclease [Rattus norvegicus]
Length = 380
Score = 214 bits (546), Expect = 6e-53, Method: Compositional matrix adjust.
Identities = 94/142 (66%), Positives = 120/142 (84%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVLE 120
AP EAEA CAA+ KAGKVYA ATEDMD LTFGS +L+RH+T SEA+KLP+QEFHL +VL+
Sbjct: 155 APSEAEASCAALAKAGKVYAAATEDMDCLTFGSPVLMRHLTASEAKKLPIQEFHLSRVLQ 214
Query: 121 GMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGW 180
+ L+ E+F+DLCILLG DYC+S+RGIGPKRA++LI++H+SIE+I+ +D KY VPE W
Sbjct: 215 ELGLNQEQFVDLCILLGSDYCESVRGIGPKRAVDLIQKHKSIEEIVRRLDPSKYPVPENW 274
Query: 181 LYKEARELFRHPEVADPETIEF 202
L+KEAR+LF PEV DPE++E
Sbjct: 275 LHKEARQLFLEPEVVDPESVEL 296
Score = 142 bits (359), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 68/110 (61%), Positives = 87/110 (79%), Gaps = 7/110 (6%)
Query: 305 LVADVAPSSIRES-------RKICIDASMSLYQFLIAVRSEGNQLMSVDGEPTSHLMGTF 357
L+ADVAPS+IRE+ RK+ IDASMS+YQFLIAVR G+ L + +GE TSHLMG F
Sbjct: 9 LIADVAPSAIRENDIKSYFGRKVAIDASMSIYQFLIAVRQGGDVLQNEEGETTSHLMGMF 68
Query: 358 YRTIRLVEHGLKPIYVFDGKPPTLKSGELNKRMEKREDAQKALAKAQEQG 407
YRTIR++E+G+KP+Y+FDGKPP LKS +L KR E+R +A+K L +AQE G
Sbjct: 69 YRTIRMMENGIKPVYIFDGKPPQLKSAQLAKRSERRAEAEKQLQQAQEAG 118
Score = 119 bits (297), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 48/74 (64%), Positives = 64/74 (86%)
Query: 232 FIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGWLYKEAREL 291
F+DLCILLG DYC+S+RGIGPKRA++LI++H+SIE+I+ +D KY VPE WL+KEAR+L
Sbjct: 223 FVDLCILLGSDYCESVRGIGPKRAVDLIQKHKSIEEIVRRLDPSKYPVPENWLHKEARQL 282
Query: 292 FRHPEIADPETIEL 305
F PE+ DPE++EL
Sbjct: 283 FLEPEVVDPESVEL 296
Score = 76.3 bits (186), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 34/65 (52%), Positives = 48/65 (73%), Gaps = 3/65 (4%)
Query: 1 MTLKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSSTTQGRLDSFFTIR---REE 57
+ LKWS+P+E+ LVK++CG+K F+E+RIR+G K+L K+R +TQGRLD FF +
Sbjct: 294 VELKWSEPNEEELVKFMCGEKQFSEERIRSGVKRLNKSRQGSTQGRLDDFFKVTGSLSSA 353
Query: 58 KRKAP 62
KRK P
Sbjct: 354 KRKEP 358
Score = 75.5 bits (184), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 31/55 (56%), Positives = 45/55 (81%)
Query: 405 EQGKLKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSTTTQGRLDSFFTI 459
E +LKWS+P+E+ LVK++CG+K F+E+RIR+G K+L K+R +TQGRLD FF +
Sbjct: 292 ESVELKWSEPNEEELVKFMCGEKQFSEERIRSGVKRLNKSRQGSTQGRLDDFFKV 346
>gi|379991146|ref|NP_001244014.1| flap endonuclease 1 [Equus caballus]
Length = 380
Score = 214 bits (546), Expect = 7e-53, Method: Compositional matrix adjust.
Identities = 95/142 (66%), Positives = 121/142 (85%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVLE 120
AP EAEA CAA+VKAGKVYA ATEDMD LTFGS +L+RH+T SEA+KLP+QEFHL ++L+
Sbjct: 155 APSEAEASCAALVKAGKVYAAATEDMDCLTFGSPVLMRHLTASEAKKLPIQEFHLSRILQ 214
Query: 121 GMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGW 180
+ L+ E+F+DLCILLG DYC+SIRGIGPKRA++LI++H+SIE+I+ +D KY VPE W
Sbjct: 215 ELGLNQEQFVDLCILLGSDYCESIRGIGPKRAVDLIQKHKSIEEIVRRLDPNKYPVPENW 274
Query: 181 LYKEARELFRHPEVADPETIEF 202
L+KEA++LF PEV DPET+E
Sbjct: 275 LHKEAQQLFLEPEVLDPETVEL 296
Score = 132 bits (332), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 63/99 (63%), Positives = 79/99 (79%), Gaps = 7/99 (7%)
Query: 304 ELVADVAPSSIRES-------RKICIDASMSLYQFLIAVRSEGNQLMSVDGEPTSHLMGT 356
+L+ADVAP +IRE+ RK+ IDASMS+YQFLIAVR G+ L + +GE TSHLMG
Sbjct: 8 KLIADVAPGAIRENDIKSYFGRKVAIDASMSIYQFLIAVRQGGDVLQNEEGETTSHLMGM 67
Query: 357 FYRTIRLVEHGLKPIYVFDGKPPTLKSGELNKRMEKRED 395
FYRTIR++E+G+KP+YVFDGKPP LKSGEL KR E+R +
Sbjct: 68 FYRTIRMMENGIKPVYVFDGKPPQLKSGELAKRGERRAE 106
Score = 117 bits (294), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 49/74 (66%), Positives = 64/74 (86%)
Query: 232 FIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGWLYKEAREL 291
F+DLCILLG DYC+SIRGIGPKRA++LI++H+SIE+I+ +D KY VPE WL+KEA++L
Sbjct: 223 FVDLCILLGSDYCESIRGIGPKRAVDLIQKHKSIEEIVRRLDPNKYPVPENWLHKEAQQL 282
Query: 292 FRHPEIADPETIEL 305
F PE+ DPET+EL
Sbjct: 283 FLEPEVLDPETVEL 296
Score = 75.9 bits (185), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 34/63 (53%), Positives = 47/63 (74%), Gaps = 3/63 (4%)
Query: 3 LKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSSTTQGRLDSFFTIR---REEKR 59
LKWS+P+E+ LVK++CG+K F+E+RIR+G K+L K+R +TQGRLD FF + KR
Sbjct: 296 LKWSEPNEEELVKFMCGEKQFSEERIRSGVKRLSKSRQGSTQGRLDDFFKVTGSLSSAKR 355
Query: 60 KAP 62
K P
Sbjct: 356 KEP 358
Score = 74.7 bits (182), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 31/55 (56%), Positives = 45/55 (81%)
Query: 405 EQGKLKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSTTTQGRLDSFFTI 459
E +LKWS+P+E+ LVK++CG+K F+E+RIR+G K+L K+R +TQGRLD FF +
Sbjct: 292 ETVELKWSEPNEEELVKFMCGEKQFSEERIRSGVKRLSKSRQGSTQGRLDDFFKV 346
>gi|348560389|ref|XP_003465996.1| PREDICTED: flap endonuclease 1-like [Cavia porcellus]
Length = 380
Score = 214 bits (546), Expect = 7e-53, Method: Compositional matrix adjust.
Identities = 94/142 (66%), Positives = 121/142 (85%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVLE 120
AP EAEA CAA+VKAGKVYA ATEDMD LTFGS +L+RH+T SEA+KLP+QEFHL +VL+
Sbjct: 155 APSEAEASCAALVKAGKVYAAATEDMDCLTFGSPVLMRHLTASEAKKLPIQEFHLSRVLQ 214
Query: 121 GMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGW 180
++L+ +F+DLCILLG DYC+SIRGIGPKRA++LI++H+SIE+I+ +D KY VPE W
Sbjct: 215 ALDLTQAQFVDLCILLGSDYCESIRGIGPKRAVDLIQKHKSIEEIVRRLDHSKYPVPENW 274
Query: 181 LYKEARELFRHPEVADPETIEF 202
L+KEA++LF PEV DPE++E
Sbjct: 275 LHKEAQQLFLEPEVLDPESVEL 296
Score = 143 bits (360), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 70/111 (63%), Positives = 86/111 (77%), Gaps = 7/111 (6%)
Query: 304 ELVADVAPSSIRES-------RKICIDASMSLYQFLIAVRSEGNQLMSVDGEPTSHLMGT 356
+L+ADVAP +IRE+ RK+ IDASMS+YQFLIAVR G L + +GE TSHLMG
Sbjct: 8 KLIADVAPGAIRENDIKSYFGRKVAIDASMSIYQFLIAVRQGGEVLQNEEGETTSHLMGM 67
Query: 357 FYRTIRLVEHGLKPIYVFDGKPPTLKSGELNKRMEKREDAQKALAKAQEQG 407
FYRTIR+VE+G+KP+YVFDGKPP LKSGEL KR E+R +A+K L +AQ G
Sbjct: 68 FYRTIRMVENGIKPVYVFDGKPPQLKSGELAKRSERRAEAEKQLQQAQAVG 118
Score = 116 bits (291), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 48/74 (64%), Positives = 64/74 (86%)
Query: 232 FIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGWLYKEAREL 291
F+DLCILLG DYC+SIRGIGPKRA++LI++H+SIE+I+ +D KY VPE WL+KEA++L
Sbjct: 223 FVDLCILLGSDYCESIRGIGPKRAVDLIQKHKSIEEIVRRLDHSKYPVPENWLHKEAQQL 282
Query: 292 FRHPEIADPETIEL 305
F PE+ DPE++EL
Sbjct: 283 FLEPEVLDPESVEL 296
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 40/85 (47%), Positives = 57/85 (67%), Gaps = 10/85 (11%)
Query: 3 LKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSSTTQGRLDSFFTI--------R 54
LKWS+PDE+ LVK+LCG+K F+E+RIR+G ++L K+R +TQGRLD FF + R
Sbjct: 296 LKWSEPDEEQLVKFLCGEKQFSEERIRSGVRRLSKSRQGSTQGRLDDFFKVTGSLSSAKR 355
Query: 55 REEKRKAPCEAEAQ--CAAMVKAGK 77
+E + K P + +A+ A K GK
Sbjct: 356 KEPEPKGPTKKKAKTGVAGRFKRGK 380
Score = 76.6 bits (187), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 32/55 (58%), Positives = 45/55 (81%)
Query: 405 EQGKLKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSTTTQGRLDSFFTI 459
E +LKWS+PDE+ LVK+LCG+K F+E+RIR+G ++L K+R +TQGRLD FF +
Sbjct: 292 ESVELKWSEPDEEQLVKFLCGEKQFSEERIRSGVRRLSKSRQGSTQGRLDDFFKV 346
>gi|318055766|ref|NP_001187811.1| flap endonuclease 1-b [Ictalurus punctatus]
gi|308324033|gb|ADO29152.1| flap endonuclease 1-b [Ictalurus punctatus]
Length = 380
Score = 214 bits (546), Expect = 7e-53, Method: Compositional matrix adjust.
Identities = 98/142 (69%), Positives = 118/142 (83%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVLE 120
APCEAEA CAA+VKAGK YATATEDMD LTFG+++LLRH+T SEA+KL +QEFH +VL+
Sbjct: 155 APCEAEASCAALVKAGKAYATATEDMDGLTFGTSVLLRHLTASEAKKLSIQEFHFSRVLQ 214
Query: 121 GMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGW 180
M LSH++FIDLCILLGCDYC +I+GIGPKRAI+LIK++ SIE+IL+NID K+ PE W
Sbjct: 215 EMSLSHQQFIDLCILLGCDYCGTIKGIGPKRAIDLIKQYGSIEEILDNIDQSKHPAPEDW 274
Query: 181 LYKEARELFRHPEVADPETIEF 202
LYKEAR LF PEV D +E
Sbjct: 275 LYKEARALFLEPEVVDCTAMEL 296
Score = 145 bits (367), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 75/125 (60%), Positives = 93/125 (74%), Gaps = 7/125 (5%)
Query: 304 ELVADVAPSSIRE-------SRKICIDASMSLYQFLIAVRSEGNQLMSVDGEPTSHLMGT 356
+L+AD AP++IRE RKI IDASM +YQFLIAVR +GN L + DGE TSHLMG
Sbjct: 8 KLIADQAPTAIREQDIKNYFGRKIAIDASMCIYQFLIAVRRDGNVLQNDDGETTSHLMGM 67
Query: 357 FYRTIRLVEHGLKPIYVFDGKPPTLKSGELNKRMEKREDAQKALAKAQEQGKLKWSDPDE 416
FYRTIR+++ G+KP+YVFDGKPP LKSGEL KR E+R +A+K LA+AQE G+ + D
Sbjct: 68 FYRTIRMLDSGIKPVYVFDGKPPQLKSGELEKRGERRAEAEKLLAQAQEMGEQENIDKFS 127
Query: 417 DGLVK 421
LVK
Sbjct: 128 KRLVK 132
Score = 111 bits (278), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 50/74 (67%), Positives = 60/74 (81%)
Query: 232 FIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGWLYKEAREL 291
FIDLCILLGCDYC +I+GIGPKRAI+LIK++ SIE+IL+NID K+ PE WLYKEAR L
Sbjct: 223 FIDLCILLGCDYCGTIKGIGPKRAIDLIKQYGSIEEILDNIDQSKHPAPEDWLYKEARAL 282
Query: 292 FRHPEIADPETIEL 305
F PE+ D +EL
Sbjct: 283 FLEPEVVDCTAMEL 296
Score = 87.4 bits (215), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 38/64 (59%), Positives = 51/64 (79%), Gaps = 2/64 (3%)
Query: 1 MTLKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSSTTQGRLDSFFTIRR--EEK 58
M LKW++PDEDGLV+++C +K F+EDRIRNG KK++K+R +TQGRLD+FFT+ K
Sbjct: 294 MELKWNEPDEDGLVQFMCSEKQFSEDRIRNGCKKIMKSRRGSTQGRLDTFFTVTGSISSK 353
Query: 59 RKAP 62
RK P
Sbjct: 354 RKEP 357
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 33/51 (64%), Positives = 46/51 (90%)
Query: 409 LKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSTTTQGRLDSFFTI 459
LKW++PDEDGLV+++C +K F+EDRIRNG KK++K+R +TQGRLD+FFT+
Sbjct: 296 LKWNEPDEDGLVQFMCSEKQFSEDRIRNGCKKIMKSRRGSTQGRLDTFFTV 346
>gi|326919868|ref|XP_003206199.1| PREDICTED: flap endonuclease 1-like [Meleagris gallopavo]
Length = 381
Score = 214 bits (546), Expect = 7e-53, Method: Compositional matrix adjust.
Identities = 93/143 (65%), Positives = 124/143 (86%)
Query: 60 KAPCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVL 119
+AP EAEA CA +VKAGKVYA ATEDMD LTFGS +L+RH+T SE +KLP+QEFHL ++L
Sbjct: 154 EAPGEAEASCATLVKAGKVYAAATEDMDCLTFGSPVLMRHLTASETKKLPIQEFHLNRIL 213
Query: 120 EGMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEG 179
+ + L+ E+F+DLCILLGCDYC+SIRGIGPKRA+ELIK+H++IE+I+++IDTKKY +PE
Sbjct: 214 QDLGLTWEQFVDLCILLGCDYCESIRGIGPKRAVELIKQHKTIEEIIQHIDTKKYPLPEN 273
Query: 180 WLYKEARELFRHPEVADPETIEF 202
WL+KEA++LF P+V +P+ +E
Sbjct: 274 WLHKEAQKLFLEPDVVNPDDVEL 296
Score = 144 bits (364), Expect = 9e-32, Method: Compositional matrix adjust.
Identities = 70/111 (63%), Positives = 87/111 (78%), Gaps = 7/111 (6%)
Query: 305 LVADVAPSSIRES-------RKICIDASMSLYQFLIAVRSEGNQLMSVDGEPTSHLMGTF 357
L+ADVAPS+IRE+ RK+ IDASMS+YQFLIAVR L + +GE TSHLMG F
Sbjct: 9 LIADVAPSAIRENDIKSYFGRKVAIDASMSIYQFLIAVRQGAEVLQNEEGETTSHLMGMF 68
Query: 358 YRTIRLVEHGLKPIYVFDGKPPTLKSGELNKRMEKREDAQKALAKAQEQGK 408
YRTIR+VE+G+KP+YVFDGKPP LKSGEL +R E+R +A+K L +AQE G+
Sbjct: 69 YRTIRMVENGIKPVYVFDGKPPQLKSGELARRTERRSEAEKHLQEAQEAGE 119
Score = 121 bits (304), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 49/74 (66%), Positives = 68/74 (91%)
Query: 232 FIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGWLYKEAREL 291
F+DLCILLGCDYC+SIRGIGPKRA+ELIK+H++IE+I+++IDTKKY +PE WL+KEA++L
Sbjct: 223 FVDLCILLGCDYCESIRGIGPKRAVELIKQHKTIEEIIQHIDTKKYPLPENWLHKEAQKL 282
Query: 292 FRHPEIADPETIEL 305
F P++ +P+ +EL
Sbjct: 283 FLEPDVVNPDDVEL 296
Score = 75.1 bits (183), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 33/63 (52%), Positives = 46/63 (73%), Gaps = 3/63 (4%)
Query: 3 LKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSSTTQGRLDSFFTIR---REEKR 59
LKW++P+E+ LV+++CG+K F E+RIRNG K+L K+R +TQGRLD FF + KR
Sbjct: 296 LKWTEPNEEELVQFMCGEKQFNEERIRNGVKRLSKSRQGSTQGRLDDFFKVTGSITSAKR 355
Query: 60 KAP 62
K P
Sbjct: 356 KEP 358
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 29/52 (55%), Positives = 43/52 (82%)
Query: 408 KLKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSTTTQGRLDSFFTI 459
+LKW++P+E+ LV+++CG+K F E+RIRNG K+L K+R +TQGRLD FF +
Sbjct: 295 ELKWTEPNEEELVQFMCGEKQFNEERIRNGVKRLSKSRQGSTQGRLDDFFKV 346
>gi|354503001|ref|XP_003513570.1| PREDICTED: flap endonuclease 1-like [Cricetulus griseus]
Length = 380
Score = 214 bits (545), Expect = 9e-53, Method: Compositional matrix adjust.
Identities = 95/142 (66%), Positives = 121/142 (85%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVLE 120
AP EAEA CAA+VKAGKVYA ATEDMD LTFGS +L+RH+T SEA+KLP+QEFHL +VL+
Sbjct: 155 APSEAEASCAALVKAGKVYAAATEDMDCLTFGSPVLMRHLTASEAKKLPIQEFHLSRVLQ 214
Query: 121 GMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGW 180
+ L+ E+F+DLCILLG DYC+SIRGIGPKRA++LI++H+SIE+I+ +D KY VPE W
Sbjct: 215 ELGLNQEQFVDLCILLGSDYCESIRGIGPKRAVDLIQKHKSIEEIVRRLDPNKYPVPENW 274
Query: 181 LYKEARELFRHPEVADPETIEF 202
L+KEA++LF PEV DPE++E
Sbjct: 275 LHKEAQQLFLEPEVLDPESVEL 296
Score = 146 bits (369), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 71/110 (64%), Positives = 88/110 (80%), Gaps = 7/110 (6%)
Query: 305 LVADVAPSSIRES-------RKICIDASMSLYQFLIAVRSEGNQLMSVDGEPTSHLMGTF 357
L+ADVAPS+IRE+ RK+ IDASMS+YQFLIAVR G+ L + +GE TSHLMG F
Sbjct: 9 LIADVAPSAIRENDIKSYFGRKVAIDASMSIYQFLIAVRQGGDVLQNEEGETTSHLMGMF 68
Query: 358 YRTIRLVEHGLKPIYVFDGKPPTLKSGELNKRMEKREDAQKALAKAQEQG 407
YRTIR++E+G+KP+YVFDGKPP LKSGEL KR E+R +A+K L +AQE G
Sbjct: 69 YRTIRMMENGIKPVYVFDGKPPQLKSGELAKRSERRAEAEKQLQQAQEAG 118
Score = 116 bits (291), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 48/74 (64%), Positives = 64/74 (86%)
Query: 232 FIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGWLYKEAREL 291
F+DLCILLG DYC+SIRGIGPKRA++LI++H+SIE+I+ +D KY VPE WL+KEA++L
Sbjct: 223 FVDLCILLGSDYCESIRGIGPKRAVDLIQKHKSIEEIVRRLDPNKYPVPENWLHKEAQQL 282
Query: 292 FRHPEIADPETIEL 305
F PE+ DPE++EL
Sbjct: 283 FLEPEVLDPESVEL 296
Score = 76.3 bits (186), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 34/63 (53%), Positives = 47/63 (74%), Gaps = 3/63 (4%)
Query: 3 LKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSSTTQGRLDSFFTIR---REEKR 59
LKWS+P+E+ LVK++CG+K F+E+RIR+G K+L K+R +TQGRLD FF + KR
Sbjct: 296 LKWSEPNEEELVKFMCGEKQFSEERIRSGVKRLSKSRQGSTQGRLDDFFKVTGSLSSAKR 355
Query: 60 KAP 62
K P
Sbjct: 356 KEP 358
Score = 75.5 bits (184), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 31/55 (56%), Positives = 45/55 (81%)
Query: 405 EQGKLKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSTTTQGRLDSFFTI 459
E +LKWS+P+E+ LVK++CG+K F+E+RIR+G K+L K+R +TQGRLD FF +
Sbjct: 292 ESVELKWSEPNEEELVKFMCGEKQFSEERIRSGVKRLSKSRQGSTQGRLDDFFKV 346
>gi|81883819|sp|Q5XIP6.1|FEN1_RAT RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|53733451|gb|AAH83630.1| Fen1 protein [Rattus norvegicus]
gi|149062370|gb|EDM12793.1| flap structure-specific endonuclease 1 [Rattus norvegicus]
Length = 380
Score = 214 bits (544), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 94/142 (66%), Positives = 120/142 (84%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVLE 120
AP EAEA CAA+ KAGKVYA ATEDMD LTFGS +L+RH+T SEA+KLP+QEFHL +VL+
Sbjct: 155 APSEAEASCAALAKAGKVYAAATEDMDCLTFGSPVLMRHLTASEAKKLPIQEFHLSRVLQ 214
Query: 121 GMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGW 180
+ L+ E+F+DLCILLG DYC+S+RGIGPKRA++LI++H+SIE+I+ +D KY VPE W
Sbjct: 215 ELGLNQEQFVDLCILLGSDYCESVRGIGPKRAVDLIQKHKSIEEIVRRLDPSKYPVPENW 274
Query: 181 LYKEARELFRHPEVADPETIEF 202
L+KEAR+LF PEV DPE++E
Sbjct: 275 LHKEARQLFLEPEVLDPESVEL 296
Score = 146 bits (368), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 70/110 (63%), Positives = 88/110 (80%), Gaps = 7/110 (6%)
Query: 305 LVADVAPSSIRES-------RKICIDASMSLYQFLIAVRSEGNQLMSVDGEPTSHLMGTF 357
L+ADVAPS+IRE+ RK+ IDASMS+YQFLIAVR G+ L + +GE TSHLMG F
Sbjct: 9 LIADVAPSAIRENDIKSYFGRKVAIDASMSIYQFLIAVRQGGDVLQNEEGETTSHLMGMF 68
Query: 358 YRTIRLVEHGLKPIYVFDGKPPTLKSGELNKRMEKREDAQKALAKAQEQG 407
YRTIR++E+G+KP+Y+FDGKPP LKSGEL KR E+R +A+K L +AQE G
Sbjct: 69 YRTIRMMENGIKPVYIFDGKPPQLKSGELAKRSERRAEAEKQLQQAQEAG 118
Score = 118 bits (295), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 48/74 (64%), Positives = 64/74 (86%)
Query: 232 FIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGWLYKEAREL 291
F+DLCILLG DYC+S+RGIGPKRA++LI++H+SIE+I+ +D KY VPE WL+KEAR+L
Sbjct: 223 FVDLCILLGSDYCESVRGIGPKRAVDLIQKHKSIEEIVRRLDPSKYPVPENWLHKEARQL 282
Query: 292 FRHPEIADPETIEL 305
F PE+ DPE++EL
Sbjct: 283 FLEPEVLDPESVEL 296
Score = 75.9 bits (185), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 34/65 (52%), Positives = 48/65 (73%), Gaps = 3/65 (4%)
Query: 1 MTLKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSSTTQGRLDSFFTIR---REE 57
+ LKWS+P+E+ LVK++CG+K F+E+RIR+G K+L K+R +TQGRLD FF +
Sbjct: 294 VELKWSEPNEEELVKFMCGEKQFSEERIRSGVKRLNKSRQGSTQGRLDDFFKVTGSLSSA 353
Query: 58 KRKAP 62
KRK P
Sbjct: 354 KRKEP 358
Score = 75.1 bits (183), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 31/55 (56%), Positives = 45/55 (81%)
Query: 405 EQGKLKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSTTTQGRLDSFFTI 459
E +LKWS+P+E+ LVK++CG+K F+E+RIR+G K+L K+R +TQGRLD FF +
Sbjct: 292 ESVELKWSEPNEEELVKFMCGEKQFSEERIRSGVKRLNKSRQGSTQGRLDDFFKV 346
>gi|57099749|ref|XP_533271.1| PREDICTED: flap endonuclease 1 isoform 1 [Canis lupus familiaris]
Length = 380
Score = 214 bits (544), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 94/142 (66%), Positives = 121/142 (85%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVLE 120
AP EAEA CAA+VKAGKVYA ATEDMD LTFGS +L+RH+T SEA+KLP+QEFHL ++L+
Sbjct: 155 APSEAEASCAALVKAGKVYAAATEDMDCLTFGSPVLMRHLTASEAKKLPIQEFHLNRILQ 214
Query: 121 GMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGW 180
+ L+ E+F+DLCILLG DYC+SIRGIGPKRA++LI++H+SIE+I+ +D KY VPE W
Sbjct: 215 ELGLNQEQFVDLCILLGSDYCESIRGIGPKRAVDLIQKHKSIEEIVRRLDPNKYPVPENW 274
Query: 181 LYKEARELFRHPEVADPETIEF 202
L+KEA++LF PEV DPE++E
Sbjct: 275 LHKEAQQLFLEPEVLDPESVEL 296
Score = 134 bits (338), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 64/99 (64%), Positives = 80/99 (80%), Gaps = 7/99 (7%)
Query: 304 ELVADVAPSSIRES-------RKICIDASMSLYQFLIAVRSEGNQLMSVDGEPTSHLMGT 356
+L+ADVAPS+IRE+ RK+ IDASMS+YQFLIAVR G+ L + +GE TSHLMG
Sbjct: 8 KLIADVAPSAIRENDIKSYFGRKVAIDASMSIYQFLIAVRQGGDVLQNEEGETTSHLMGM 67
Query: 357 FYRTIRLVEHGLKPIYVFDGKPPTLKSGELNKRMEKRED 395
FYRTIR++E+G+KP+YVFDGKPP LKSGEL KR E+R +
Sbjct: 68 FYRTIRMMENGIKPVYVFDGKPPQLKSGELAKRSERRAE 106
Score = 116 bits (291), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 48/74 (64%), Positives = 64/74 (86%)
Query: 232 FIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGWLYKEAREL 291
F+DLCILLG DYC+SIRGIGPKRA++LI++H+SIE+I+ +D KY VPE WL+KEA++L
Sbjct: 223 FVDLCILLGSDYCESIRGIGPKRAVDLIQKHKSIEEIVRRLDPNKYPVPENWLHKEAQQL 282
Query: 292 FRHPEIADPETIEL 305
F PE+ DPE++EL
Sbjct: 283 FLEPEVLDPESVEL 296
Score = 74.7 bits (182), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 36/77 (46%), Positives = 51/77 (66%), Gaps = 4/77 (5%)
Query: 3 LKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSSTTQGRLDSFFTIR---REEKR 59
LKWS+P+E+ LVK++CG+K F+E+RIR+G ++L K+R +TQGRLD FF + KR
Sbjct: 296 LKWSEPNEEELVKFMCGEKQFSEERIRSGVRRLSKSRQGSTQGRLDDFFKVTGSLSSAKR 355
Query: 60 KAPCEAEAQCAAMVKAG 76
K P E + K G
Sbjct: 356 KEP-EPKGSAKKKAKTG 371
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 30/55 (54%), Positives = 45/55 (81%)
Query: 405 EQGKLKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSTTTQGRLDSFFTI 459
E +LKWS+P+E+ LVK++CG+K F+E+RIR+G ++L K+R +TQGRLD FF +
Sbjct: 292 ESVELKWSEPNEEELVKFMCGEKQFSEERIRSGVRRLSKSRQGSTQGRLDDFFKV 346
>gi|291409580|ref|XP_002721064.1| PREDICTED: flap structure-specific endonuclease 1 [Oryctolagus
cuniculus]
Length = 380
Score = 214 bits (544), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 94/142 (66%), Positives = 121/142 (85%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVLE 120
AP EAEA CAA+VKAGKVYA ATEDMD LTFGS +L+RH+T SEA+KLP+QEFHL ++L+
Sbjct: 155 APSEAEASCAALVKAGKVYAAATEDMDCLTFGSPVLMRHLTASEAKKLPIQEFHLSRILQ 214
Query: 121 GMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGW 180
+ L+ E+F+DLCILLG DYC+SIRGIGPKRA++LI++H+SIE+I+ +D KY VPE W
Sbjct: 215 ELGLNQEQFVDLCILLGSDYCESIRGIGPKRAVDLIQKHKSIEEIVRRLDPSKYAVPENW 274
Query: 181 LYKEARELFRHPEVADPETIEF 202
L+KEA++LF PEV DPE++E
Sbjct: 275 LHKEAQQLFLEPEVLDPESVEL 296
Score = 134 bits (336), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 64/99 (64%), Positives = 79/99 (79%), Gaps = 7/99 (7%)
Query: 304 ELVADVAPSSIRES-------RKICIDASMSLYQFLIAVRSEGNQLMSVDGEPTSHLMGT 356
+L+ADVAPS+IRE+ RK+ IDASMS+YQFLIAVR G L + +GE TSHLMG
Sbjct: 8 KLIADVAPSAIRENDIKSYFGRKVAIDASMSIYQFLIAVRQGGEVLQNEEGETTSHLMGM 67
Query: 357 FYRTIRLVEHGLKPIYVFDGKPPTLKSGELNKRMEKRED 395
FYRTIR++E+G+KP+YVFDGKPP LKSGEL KR E+R +
Sbjct: 68 FYRTIRMMENGIKPVYVFDGKPPQLKSGELAKRSERRAE 106
Score = 117 bits (292), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 48/74 (64%), Positives = 64/74 (86%)
Query: 232 FIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGWLYKEAREL 291
F+DLCILLG DYC+SIRGIGPKRA++LI++H+SIE+I+ +D KY VPE WL+KEA++L
Sbjct: 223 FVDLCILLGSDYCESIRGIGPKRAVDLIQKHKSIEEIVRRLDPSKYAVPENWLHKEAQQL 282
Query: 292 FRHPEIADPETIEL 305
F PE+ DPE++EL
Sbjct: 283 FLEPEVLDPESVEL 296
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 32/63 (50%), Positives = 47/63 (74%), Gaps = 3/63 (4%)
Query: 3 LKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSSTTQGRLDSFFTIR---REEKR 59
LKWS+P+E+ LVK++CG+K F+E+RIR+G ++L ++R +TQGRLD FF + KR
Sbjct: 296 LKWSEPNEEELVKFMCGEKQFSEERIRSGVRRLSRSRQGSTQGRLDDFFKVTGSLSSAKR 355
Query: 60 KAP 62
K P
Sbjct: 356 KEP 358
Score = 73.2 bits (178), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 29/55 (52%), Positives = 45/55 (81%)
Query: 405 EQGKLKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSTTTQGRLDSFFTI 459
E +LKWS+P+E+ LVK++CG+K F+E+RIR+G ++L ++R +TQGRLD FF +
Sbjct: 292 ESVELKWSEPNEEELVKFMCGEKQFSEERIRSGVRRLSRSRQGSTQGRLDDFFKV 346
>gi|301781710|ref|XP_002926265.1| PREDICTED: flap endonuclease 1-like [Ailuropoda melanoleuca]
gi|281345366|gb|EFB20950.1| hypothetical protein PANDA_015901 [Ailuropoda melanoleuca]
Length = 380
Score = 214 bits (544), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 94/142 (66%), Positives = 121/142 (85%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVLE 120
AP EAEA CAA+VKAGKVYA ATEDMD LTFGS +L+RH+T SEA+KLP+QEFHL ++L+
Sbjct: 155 APSEAEASCAALVKAGKVYAAATEDMDCLTFGSPVLMRHLTASEAKKLPIQEFHLSRILQ 214
Query: 121 GMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGW 180
+ L+ E+F+DLCILLG DYC+SIRGIGPKRA++LI++H+SIE+I+ +D KY VPE W
Sbjct: 215 ELGLNQEQFVDLCILLGSDYCESIRGIGPKRAVDLIQKHKSIEEIVRRLDPNKYPVPENW 274
Query: 181 LYKEARELFRHPEVADPETIEF 202
L+KEA++LF PEV DPE++E
Sbjct: 275 LHKEAQQLFLEPEVLDPESVEL 296
Score = 142 bits (358), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 69/110 (62%), Positives = 86/110 (78%), Gaps = 7/110 (6%)
Query: 305 LVADVAPSSIRES-------RKICIDASMSLYQFLIAVRSEGNQLMSVDGEPTSHLMGTF 357
L+ADVAP +IRE+ RK+ IDASMS+YQFLIAVR G+ L + +GE TSHLMG F
Sbjct: 9 LIADVAPGAIRENDIKSYFGRKVAIDASMSIYQFLIAVRQGGDVLQNEEGETTSHLMGMF 68
Query: 358 YRTIRLVEHGLKPIYVFDGKPPTLKSGELNKRMEKREDAQKALAKAQEQG 407
YRTIR++E+G+KP+YVFDGKPP LKSGEL KR E+R +A+K L +AQ G
Sbjct: 69 YRTIRMMENGIKPVYVFDGKPPQLKSGELAKRGERRAEAEKQLQQAQAAG 118
Score = 116 bits (291), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 48/74 (64%), Positives = 64/74 (86%)
Query: 232 FIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGWLYKEAREL 291
F+DLCILLG DYC+SIRGIGPKRA++LI++H+SIE+I+ +D KY VPE WL+KEA++L
Sbjct: 223 FVDLCILLGSDYCESIRGIGPKRAVDLIQKHKSIEEIVRRLDPNKYPVPENWLHKEAQQL 282
Query: 292 FRHPEIADPETIEL 305
F PE+ DPE++EL
Sbjct: 283 FLEPEVLDPESVEL 296
Score = 75.1 bits (183), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 33/65 (50%), Positives = 48/65 (73%), Gaps = 3/65 (4%)
Query: 1 MTLKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSSTTQGRLDSFFTIR---REE 57
+ LKWS+P+E+ LVK++CG+K F+E+RIR+G ++L K+R +TQGRLD FF +
Sbjct: 294 VELKWSEPNEEELVKFMCGEKQFSEERIRSGVRRLSKSRQGSTQGRLDDFFKVTGSLSSA 353
Query: 58 KRKAP 62
KRK P
Sbjct: 354 KRKEP 358
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 30/55 (54%), Positives = 45/55 (81%)
Query: 405 EQGKLKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSTTTQGRLDSFFTI 459
E +LKWS+P+E+ LVK++CG+K F+E+RIR+G ++L K+R +TQGRLD FF +
Sbjct: 292 ESVELKWSEPNEEELVKFMCGEKQFSEERIRSGVRRLSKSRQGSTQGRLDDFFKV 346
>gi|261244970|ref|NP_001159668.1| flap endonuclease 1 [Ovis aries]
gi|317376193|sp|C8BKD0.1|FEN1_SHEEP RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|256665367|gb|ACV04829.1| flap structure-specific endonuclease 1 [Ovis aries]
Length = 380
Score = 214 bits (544), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 94/142 (66%), Positives = 121/142 (85%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVLE 120
AP EAEA CAA+VKAGKVYA ATEDMD LTFGS +L+RH+T SEA+KLP+QEFHL ++L+
Sbjct: 155 APSEAEASCAALVKAGKVYAAATEDMDCLTFGSPVLMRHLTASEAKKLPIQEFHLSRILQ 214
Query: 121 GMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGW 180
+ L+ E+F+DLCILLG DYC+SIRGIGPKRA++LI++H+SIE+I+ +D KY VPE W
Sbjct: 215 ELGLNQEQFVDLCILLGSDYCESIRGIGPKRAVDLIQKHKSIEEIVRRLDPNKYPVPENW 274
Query: 181 LYKEARELFRHPEVADPETIEF 202
L+KEA++LF PEV DPE++E
Sbjct: 275 LHKEAQQLFLEPEVLDPESVEL 296
Score = 138 bits (348), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 66/102 (64%), Positives = 83/102 (81%), Gaps = 7/102 (6%)
Query: 304 ELVADVAPSSIRES-------RKICIDASMSLYQFLIAVRSEGNQLMSVDGEPTSHLMGT 356
+L+ADVAPS+IRE+ RK+ IDASMS+YQFLIAVR G+ L + +GE TSHLMG
Sbjct: 8 KLIADVAPSAIRENDIKSYFGRKVAIDASMSIYQFLIAVRQGGDVLQNEEGETTSHLMGM 67
Query: 357 FYRTIRLVEHGLKPIYVFDGKPPTLKSGELNKRMEKREDAQK 398
FYRTIR++E+G+KP+YVFDGKPP LKSGEL KR E+R +A+K
Sbjct: 68 FYRTIRMMENGIKPVYVFDGKPPQLKSGELAKRSERRAEAEK 109
Score = 116 bits (291), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 48/74 (64%), Positives = 64/74 (86%)
Query: 232 FIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGWLYKEAREL 291
F+DLCILLG DYC+SIRGIGPKRA++LI++H+SIE+I+ +D KY VPE WL+KEA++L
Sbjct: 223 FVDLCILLGSDYCESIRGIGPKRAVDLIQKHKSIEEIVRRLDPNKYPVPENWLHKEAQQL 282
Query: 292 FRHPEIADPETIEL 305
F PE+ DPE++EL
Sbjct: 283 FLEPEVLDPESVEL 296
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 32/63 (50%), Positives = 47/63 (74%), Gaps = 3/63 (4%)
Query: 3 LKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSSTTQGRLDSFFTIR---REEKR 59
LKWS+P+E+ LV+++CG+K F+E+RIR+G ++L K+R +TQGRLD FF + KR
Sbjct: 296 LKWSEPNEEELVRFMCGEKQFSEERIRSGVRRLSKSRQGSTQGRLDDFFKVTGSLSSAKR 355
Query: 60 KAP 62
K P
Sbjct: 356 KEP 358
Score = 73.2 bits (178), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 29/55 (52%), Positives = 45/55 (81%)
Query: 405 EQGKLKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSTTTQGRLDSFFTI 459
E +LKWS+P+E+ LV+++CG+K F+E+RIR+G ++L K+R +TQGRLD FF +
Sbjct: 292 ESVELKWSEPNEEELVRFMCGEKQFSEERIRSGVRRLSKSRQGSTQGRLDDFFKV 346
>gi|431910392|gb|ELK13465.1| Flap endonuclease 1 [Pteropus alecto]
Length = 381
Score = 213 bits (543), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 94/142 (66%), Positives = 121/142 (85%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVLE 120
AP EAEA CAA+VKAGKVYA ATEDMD LTFGS +L+RH+T SEA+KLP+QEFHL ++L+
Sbjct: 155 APSEAEASCAALVKAGKVYAAATEDMDCLTFGSPVLMRHLTASEAKKLPIQEFHLSRILQ 214
Query: 121 GMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGW 180
+ L+ E+F+DLCILLG DYC+SIRGIGPKRA++LI++H+SIE+I+ +D KY VPE W
Sbjct: 215 ELGLNQEQFVDLCILLGSDYCESIRGIGPKRAVDLIQKHKSIEEIVRRLDPSKYPVPENW 274
Query: 181 LYKEARELFRHPEVADPETIEF 202
L+KEA++LF PEV DPE++E
Sbjct: 275 LHKEAQQLFLEPEVLDPESVEL 296
Score = 144 bits (364), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 70/111 (63%), Positives = 89/111 (80%), Gaps = 7/111 (6%)
Query: 304 ELVADVAPSSIRES-------RKICIDASMSLYQFLIAVRSEGNQLMSVDGEPTSHLMGT 356
+L+ADVAPS+IRE+ RK+ IDASMS+YQFLIAVR G+ L + +GE TSHLMG
Sbjct: 8 KLIADVAPSAIRENDIKSYFGRKVAIDASMSIYQFLIAVRQGGDVLQNEEGETTSHLMGM 67
Query: 357 FYRTIRLVEHGLKPIYVFDGKPPTLKSGELNKRMEKREDAQKALAKAQEQG 407
FYRTIR++E+G+KP+YVFDGKPP LKSGEL KR E+R +A+K L +AQ+ G
Sbjct: 68 FYRTIRMMENGIKPVYVFDGKPPQLKSGELAKRSERRAEAEKRLQQAQDVG 118
Score = 116 bits (291), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 48/74 (64%), Positives = 64/74 (86%)
Query: 232 FIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGWLYKEAREL 291
F+DLCILLG DYC+SIRGIGPKRA++LI++H+SIE+I+ +D KY VPE WL+KEA++L
Sbjct: 223 FVDLCILLGSDYCESIRGIGPKRAVDLIQKHKSIEEIVRRLDPSKYPVPENWLHKEAQQL 282
Query: 292 FRHPEIADPETIEL 305
F PE+ DPE++EL
Sbjct: 283 FLEPEVLDPESVEL 296
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 32/63 (50%), Positives = 47/63 (74%), Gaps = 3/63 (4%)
Query: 3 LKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSSTTQGRLDSFFTIR---REEKR 59
LKWS+P+E+ LV+++CG+K F+E+RIR+G ++L K+R +TQGRLD FF + KR
Sbjct: 296 LKWSEPNEEELVRFMCGEKQFSEERIRSGVRRLSKSRQGSTQGRLDDFFKVTGSLSSAKR 355
Query: 60 KAP 62
K P
Sbjct: 356 KEP 358
Score = 73.2 bits (178), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 29/55 (52%), Positives = 45/55 (81%)
Query: 405 EQGKLKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSTTTQGRLDSFFTI 459
E +LKWS+P+E+ LV+++CG+K F+E+RIR+G ++L K+R +TQGRLD FF +
Sbjct: 292 ESVELKWSEPNEEELVRFMCGEKQFSEERIRSGVRRLSKSRQGSTQGRLDDFFKV 346
>gi|61365237|gb|AAX42675.1| flap structure-specific endonuclease 1 [synthetic construct]
gi|61365242|gb|AAX42676.1| flap structure-specific endonuclease 1 [synthetic construct]
gi|61369466|gb|AAX43341.1| flap structure-specific endonuclease 1 [synthetic construct]
Length = 381
Score = 213 bits (543), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 94/142 (66%), Positives = 120/142 (84%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVLE 120
AP EAEA CAA+VKAGKVYA ATEDMD LTFGS +L+RH+T SEA+KLP+QEFHL ++L+
Sbjct: 155 APSEAEASCAALVKAGKVYAAATEDMDCLTFGSPVLMRHLTASEAKKLPIQEFHLSRILQ 214
Query: 121 GMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGW 180
+ L+ E+F+DLCILLG DYC+SIRGIGPKRA++LI++H+SIE+I+ +D KY VPE W
Sbjct: 215 ELGLNQEQFVDLCILLGSDYCESIRGIGPKRAVDLIQKHKSIEEIVRRLDPNKYPVPENW 274
Query: 181 LYKEARELFRHPEVADPETIEF 202
L+KEA +LF PEV DPE++E
Sbjct: 275 LHKEAHQLFLEPEVLDPESVEL 296
Score = 134 bits (338), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 64/99 (64%), Positives = 80/99 (80%), Gaps = 7/99 (7%)
Query: 304 ELVADVAPSSIRES-------RKICIDASMSLYQFLIAVRSEGNQLMSVDGEPTSHLMGT 356
+L+ADVAPS+IRE+ RK+ IDASMS+YQFLIAVR G+ L + +GE TSHLMG
Sbjct: 8 KLIADVAPSAIRENDIKSYFGRKVAIDASMSIYQFLIAVRQGGDVLQNEEGETTSHLMGM 67
Query: 357 FYRTIRLVEHGLKPIYVFDGKPPTLKSGELNKRMEKRED 395
FYRTIR++E+G+KP+YVFDGKPP LKSGEL KR E+R +
Sbjct: 68 FYRTIRMMENGIKPVYVFDGKPPQLKSGELAKRSERRAE 106
Score = 116 bits (290), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 48/74 (64%), Positives = 63/74 (85%)
Query: 232 FIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGWLYKEAREL 291
F+DLCILLG DYC+SIRGIGPKRA++LI++H+SIE+I+ +D KY VPE WL+KEA +L
Sbjct: 223 FVDLCILLGSDYCESIRGIGPKRAVDLIQKHKSIEEIVRRLDPNKYPVPENWLHKEAHQL 282
Query: 292 FRHPEIADPETIEL 305
F PE+ DPE++EL
Sbjct: 283 FLEPEVLDPESVEL 296
Score = 76.3 bits (186), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 37/83 (44%), Positives = 56/83 (67%), Gaps = 11/83 (13%)
Query: 3 LKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSSTTQGRLDSFFTI--------R 54
LKWS+P+E+ L+K++CG+K F+E+RIR+G K+L K+R +TQGRLD FF + R
Sbjct: 296 LKWSEPNEEELIKFMCGEKQFSEERIRSGVKRLSKSRQGSTQGRLDDFFKVTGSLSSAKR 355
Query: 55 REEKRKAPCEAEAQCAAMVKAGK 77
+E + K + +A+ A AGK
Sbjct: 356 KEPEPKGSTKKKAKTGA---AGK 375
Score = 74.7 bits (182), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 30/55 (54%), Positives = 45/55 (81%)
Query: 405 EQGKLKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSTTTQGRLDSFFTI 459
E +LKWS+P+E+ L+K++CG+K F+E+RIR+G K+L K+R +TQGRLD FF +
Sbjct: 292 ESVELKWSEPNEEELIKFMCGEKQFSEERIRSGVKRLSKSRQGSTQGRLDDFFKV 346
>gi|311247497|ref|XP_003122676.1| PREDICTED: flap endonuclease 1-like isoform 2 [Sus scrofa]
Length = 393
Score = 213 bits (543), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 95/142 (66%), Positives = 120/142 (84%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVLE 120
AP EAEA CAA+VKAGKVYA ATEDMD LTFGS +L+RH+T SEA+KLP+QEFHL +VL+
Sbjct: 168 APSEAEASCAALVKAGKVYAAATEDMDCLTFGSPVLMRHLTASEAKKLPIQEFHLSRVLQ 227
Query: 121 GMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGW 180
+ L+ E+F+DLCILLG DYC+SIRGIGPKRA++LI++H+SIE+I+ +D KY VPE W
Sbjct: 228 ELGLNQEQFVDLCILLGSDYCESIRGIGPKRAVDLIQKHKSIEEIVRRLDPNKYPVPENW 287
Query: 181 LYKEARELFRHPEVADPETIEF 202
L+KEA++LF PEV DPE +E
Sbjct: 288 LHKEAQQLFLEPEVLDPEAVEL 309
Score = 137 bits (344), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 65/102 (63%), Positives = 82/102 (80%), Gaps = 7/102 (6%)
Query: 304 ELVADVAPSSIRES-------RKICIDASMSLYQFLIAVRSEGNQLMSVDGEPTSHLMGT 356
+L+ADVAP +IRE+ RK+ IDASMS+YQFLIAVR G+ L + +GE TSHLMG
Sbjct: 21 KLIADVAPGAIRENDIKSYFGRKVAIDASMSIYQFLIAVRQGGDVLQNEEGETTSHLMGM 80
Query: 357 FYRTIRLVEHGLKPIYVFDGKPPTLKSGELNKRMEKREDAQK 398
FYRTIR++E+G+KP+YVFDGKPP LKSGEL KR E+R +A+K
Sbjct: 81 FYRTIRMMENGIKPVYVFDGKPPQLKSGELAKRSERRAEAEK 122
Score = 116 bits (290), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 48/74 (64%), Positives = 63/74 (85%)
Query: 232 FIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGWLYKEAREL 291
F+DLCILLG DYC+SIRGIGPKRA++LI++H+SIE+I+ +D KY VPE WL+KEA++L
Sbjct: 236 FVDLCILLGSDYCESIRGIGPKRAVDLIQKHKSIEEIVRRLDPNKYPVPENWLHKEAQQL 295
Query: 292 FRHPEIADPETIEL 305
F PE+ DPE +EL
Sbjct: 296 FLEPEVLDPEAVEL 309
Score = 75.1 bits (183), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 33/63 (52%), Positives = 47/63 (74%), Gaps = 3/63 (4%)
Query: 3 LKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSSTTQGRLDSFFTIR---REEKR 59
LKWS+P+E+ LVK++CG+K F+E+RIR+G ++L K+R +TQGRLD FF + KR
Sbjct: 309 LKWSEPNEEELVKFMCGEKQFSEERIRSGVRRLSKSRQGSTQGRLDDFFKVTGSLSSAKR 368
Query: 60 KAP 62
K P
Sbjct: 369 KEP 371
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 30/55 (54%), Positives = 45/55 (81%)
Query: 405 EQGKLKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSTTTQGRLDSFFTI 459
E +LKWS+P+E+ LVK++CG+K F+E+RIR+G ++L K+R +TQGRLD FF +
Sbjct: 305 EAVELKWSEPNEEELVKFMCGEKQFSEERIRSGVRRLSKSRQGSTQGRLDDFFKV 359
>gi|4758356|ref|NP_004102.1| flap endonuclease 1 [Homo sapiens]
gi|114637922|ref|XP_001149352.1| PREDICTED: flap endonuclease 1 isoform 2 [Pan troglodytes]
gi|297688500|ref|XP_002821719.1| PREDICTED: flap endonuclease 1 isoform 1 [Pongo abelii]
gi|297688502|ref|XP_002821720.1| PREDICTED: flap endonuclease 1 isoform 2 [Pongo abelii]
gi|332836633|ref|XP_001149490.2| PREDICTED: flap endonuclease 1 isoform 4 [Pan troglodytes]
gi|397516600|ref|XP_003828512.1| PREDICTED: flap endonuclease 1 isoform 1 [Pan paniscus]
gi|397516602|ref|XP_003828513.1| PREDICTED: flap endonuclease 1 isoform 2 [Pan paniscus]
gi|410045196|ref|XP_003951955.1| PREDICTED: flap endonuclease 1 [Pan troglodytes]
gi|426368750|ref|XP_004051365.1| PREDICTED: flap endonuclease 1 isoform 1 [Gorilla gorilla gorilla]
gi|426368752|ref|XP_004051366.1| PREDICTED: flap endonuclease 1 isoform 2 [Gorilla gorilla gorilla]
gi|426368754|ref|XP_004051367.1| PREDICTED: flap endonuclease 1 isoform 3 [Gorilla gorilla gorilla]
gi|729475|sp|P39748.1|FEN1_HUMAN RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=DNase
IV; AltName: Full=Flap structure-specific endonuclease
1; AltName: Full=Maturation factor 1; Short=MF1;
Short=hFEN-1
gi|21668123|gb|AAM74238.1|AF523117_1 flap structure-specific endonuclease 1 [Homo sapiens]
gi|642090|gb|AAA91331.1| endonuclease [Homo sapiens]
gi|704377|gb|AAB32522.1| DNase IV=nuclear 42 kda 5' -> 3' exonuclease [human, HeLa cells,
Peptide, 380 aa]
gi|3169155|gb|AAC23394.1| FEN1_HUMAN [Homo sapiens]
gi|3980293|emb|CAA54166.1| flap endonuclease-1 [Homo sapiens]
gi|12653113|gb|AAH00323.1| Flap structure-specific endonuclease 1 [Homo sapiens]
gi|49168608|emb|CAG38799.1| FEN1 [Homo sapiens]
gi|54695918|gb|AAV38331.1| flap structure-specific endonuclease 1 [Homo sapiens]
gi|60813555|gb|AAX36265.1| flap structure-specific endonuclease 1 [synthetic construct]
gi|60813577|gb|AAX36266.1| flap structure-specific endonuclease 1 [synthetic construct]
gi|61355090|gb|AAX41100.1| flap structure-specific endonuclease 1 [synthetic construct]
gi|61355958|gb|AAX41194.1| flap structure-specific endonuclease 1 [synthetic construct]
gi|61362985|gb|AAX42314.1| flap structure-specific endonuclease 1 [synthetic construct]
gi|119594378|gb|EAW73972.1| flap structure-specific endonuclease 1 [Homo sapiens]
gi|189053461|dbj|BAG35627.1| unnamed protein product [Homo sapiens]
gi|208968397|dbj|BAG74037.1| flap structure-specific endonuclease 1 [synthetic construct]
gi|410220904|gb|JAA07671.1| flap structure-specific endonuclease 1 [Pan troglodytes]
gi|410267972|gb|JAA21952.1| flap structure-specific endonuclease 1 [Pan troglodytes]
gi|410301536|gb|JAA29368.1| flap structure-specific endonuclease 1 [Pan troglodytes]
gi|410335329|gb|JAA36611.1| flap structure-specific endonuclease 1 [Pan troglodytes]
Length = 380
Score = 213 bits (543), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 94/142 (66%), Positives = 120/142 (84%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVLE 120
AP EAEA CAA+VKAGKVYA ATEDMD LTFGS +L+RH+T SEA+KLP+QEFHL ++L+
Sbjct: 155 APSEAEASCAALVKAGKVYAAATEDMDCLTFGSPVLMRHLTASEAKKLPIQEFHLSRILQ 214
Query: 121 GMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGW 180
+ L+ E+F+DLCILLG DYC+SIRGIGPKRA++LI++H+SIE+I+ +D KY VPE W
Sbjct: 215 ELGLNQEQFVDLCILLGSDYCESIRGIGPKRAVDLIQKHKSIEEIVRRLDPNKYPVPENW 274
Query: 181 LYKEARELFRHPEVADPETIEF 202
L+KEA +LF PEV DPE++E
Sbjct: 275 LHKEAHQLFLEPEVLDPESVEL 296
Score = 134 bits (338), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 64/99 (64%), Positives = 80/99 (80%), Gaps = 7/99 (7%)
Query: 304 ELVADVAPSSIRES-------RKICIDASMSLYQFLIAVRSEGNQLMSVDGEPTSHLMGT 356
+L+ADVAPS+IRE+ RK+ IDASMS+YQFLIAVR G+ L + +GE TSHLMG
Sbjct: 8 KLIADVAPSAIRENDIKSYFGRKVAIDASMSIYQFLIAVRQGGDVLQNEEGETTSHLMGM 67
Query: 357 FYRTIRLVEHGLKPIYVFDGKPPTLKSGELNKRMEKRED 395
FYRTIR++E+G+KP+YVFDGKPP LKSGEL KR E+R +
Sbjct: 68 FYRTIRMMENGIKPVYVFDGKPPQLKSGELAKRSERRAE 106
Score = 116 bits (290), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 48/74 (64%), Positives = 63/74 (85%)
Query: 232 FIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGWLYKEAREL 291
F+DLCILLG DYC+SIRGIGPKRA++LI++H+SIE+I+ +D KY VPE WL+KEA +L
Sbjct: 223 FVDLCILLGSDYCESIRGIGPKRAVDLIQKHKSIEEIVRRLDPNKYPVPENWLHKEAHQL 282
Query: 292 FRHPEIADPETIEL 305
F PE+ DPE++EL
Sbjct: 283 FLEPEVLDPESVEL 296
Score = 75.9 bits (185), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 37/83 (44%), Positives = 56/83 (67%), Gaps = 11/83 (13%)
Query: 3 LKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSSTTQGRLDSFFTI--------R 54
LKWS+P+E+ L+K++CG+K F+E+RIR+G K+L K+R +TQGRLD FF + R
Sbjct: 296 LKWSEPNEEELIKFMCGEKQFSEERIRSGVKRLSKSRQGSTQGRLDDFFKVTGSLSSAKR 355
Query: 55 REEKRKAPCEAEAQCAAMVKAGK 77
+E + K + +A+ A AGK
Sbjct: 356 KEPEPKGSTKKKAKTGA---AGK 375
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 30/55 (54%), Positives = 45/55 (81%)
Query: 405 EQGKLKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSTTTQGRLDSFFTI 459
E +LKWS+P+E+ L+K++CG+K F+E+RIR+G K+L K+R +TQGRLD FF +
Sbjct: 292 ESVELKWSEPNEEELIKFMCGEKQFSEERIRSGVKRLSKSRQGSTQGRLDDFFKV 346
>gi|311247499|ref|XP_003122675.1| PREDICTED: flap endonuclease 1-like isoform 1 [Sus scrofa]
Length = 380
Score = 213 bits (543), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 95/142 (66%), Positives = 120/142 (84%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVLE 120
AP EAEA CAA+VKAGKVYA ATEDMD LTFGS +L+RH+T SEA+KLP+QEFHL +VL+
Sbjct: 155 APSEAEASCAALVKAGKVYAAATEDMDCLTFGSPVLMRHLTASEAKKLPIQEFHLSRVLQ 214
Query: 121 GMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGW 180
+ L+ E+F+DLCILLG DYC+SIRGIGPKRA++LI++H+SIE+I+ +D KY VPE W
Sbjct: 215 ELGLNQEQFVDLCILLGSDYCESIRGIGPKRAVDLIQKHKSIEEIVRRLDPNKYPVPENW 274
Query: 181 LYKEARELFRHPEVADPETIEF 202
L+KEA++LF PEV DPE +E
Sbjct: 275 LHKEAQQLFLEPEVLDPEAVEL 296
Score = 137 bits (344), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 65/102 (63%), Positives = 82/102 (80%), Gaps = 7/102 (6%)
Query: 304 ELVADVAPSSIRES-------RKICIDASMSLYQFLIAVRSEGNQLMSVDGEPTSHLMGT 356
+L+ADVAP +IRE+ RK+ IDASMS+YQFLIAVR G+ L + +GE TSHLMG
Sbjct: 8 KLIADVAPGAIRENDIKSYFGRKVAIDASMSIYQFLIAVRQGGDVLQNEEGETTSHLMGM 67
Query: 357 FYRTIRLVEHGLKPIYVFDGKPPTLKSGELNKRMEKREDAQK 398
FYRTIR++E+G+KP+YVFDGKPP LKSGEL KR E+R +A+K
Sbjct: 68 FYRTIRMMENGIKPVYVFDGKPPQLKSGELAKRSERRAEAEK 109
Score = 115 bits (289), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 48/74 (64%), Positives = 63/74 (85%)
Query: 232 FIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGWLYKEAREL 291
F+DLCILLG DYC+SIRGIGPKRA++LI++H+SIE+I+ +D KY VPE WL+KEA++L
Sbjct: 223 FVDLCILLGSDYCESIRGIGPKRAVDLIQKHKSIEEIVRRLDPNKYPVPENWLHKEAQQL 282
Query: 292 FRHPEIADPETIEL 305
F PE+ DPE +EL
Sbjct: 283 FLEPEVLDPEAVEL 296
Score = 75.1 bits (183), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 33/63 (52%), Positives = 47/63 (74%), Gaps = 3/63 (4%)
Query: 3 LKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSSTTQGRLDSFFTIR---REEKR 59
LKWS+P+E+ LVK++CG+K F+E+RIR+G ++L K+R +TQGRLD FF + KR
Sbjct: 296 LKWSEPNEEELVKFMCGEKQFSEERIRSGVRRLSKSRQGSTQGRLDDFFKVTGSLSSAKR 355
Query: 60 KAP 62
K P
Sbjct: 356 KEP 358
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 30/55 (54%), Positives = 45/55 (81%)
Query: 405 EQGKLKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSTTTQGRLDSFFTI 459
E +LKWS+P+E+ LVK++CG+K F+E+RIR+G ++L K+R +TQGRLD FF +
Sbjct: 292 EAVELKWSEPNEEELVKFMCGEKQFSEERIRSGVRRLSKSRQGSTQGRLDDFFKV 346
>gi|395545349|ref|XP_003774565.1| PREDICTED: flap endonuclease 1 [Sarcophilus harrisii]
Length = 380
Score = 213 bits (543), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 96/143 (67%), Positives = 121/143 (84%)
Query: 60 KAPCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVL 119
+AP EAEA CAA+VKAGKVYA ATEDMD LTFGS +L+RH+T SEA+KLP+QEFHL +VL
Sbjct: 154 EAPSEAEASCAALVKAGKVYAAATEDMDCLTFGSPVLMRHLTASEAKKLPIQEFHLSRVL 213
Query: 120 EGMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEG 179
+G+ L+ E+F+DLCILLG DYC+SIRGIGPKRA++LI++H+SIE+IL +D KKY VP+
Sbjct: 214 QGLGLTQEQFVDLCILLGSDYCESIRGIGPKRAMDLIQQHKSIEEILRRLDPKKYPVPDN 273
Query: 180 WLYKEARELFRHPEVADPETIEF 202
WL+KEA+ LF PEV D E +E
Sbjct: 274 WLHKEAQRLFLEPEVLDAEAVEL 296
Score = 140 bits (352), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 68/104 (65%), Positives = 84/104 (80%), Gaps = 7/104 (6%)
Query: 304 ELVADVAPSSIRES-------RKICIDASMSLYQFLIAVRSEGNQLMSVDGEPTSHLMGT 356
+L+ADVAPS+IRE+ RK+ IDASMS+YQFLIAVR G+ L + +GE TSHLMG
Sbjct: 8 KLIADVAPSAIRENDIKSYFGRKVAIDASMSIYQFLIAVRQGGDVLQNEEGEATSHLMGM 67
Query: 357 FYRTIRLVEHGLKPIYVFDGKPPTLKSGELNKRMEKREDAQKAL 400
FYRTIR+VE+G+KP+YVFDGKPP LKSGEL KR E+R +A+K L
Sbjct: 68 FYRTIRMVENGIKPVYVFDGKPPQLKSGELAKRGERRAEAEKQL 111
Score = 112 bits (281), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 48/74 (64%), Positives = 62/74 (83%)
Query: 232 FIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGWLYKEAREL 291
F+DLCILLG DYC+SIRGIGPKRA++LI++H+SIE+IL +D KKY VP+ WL+KEA+ L
Sbjct: 223 FVDLCILLGSDYCESIRGIGPKRAMDLIQQHKSIEEILRRLDPKKYPVPDNWLHKEAQRL 282
Query: 292 FRHPEIADPETIEL 305
F PE+ D E +EL
Sbjct: 283 FLEPEVLDAEAVEL 296
Score = 79.3 bits (194), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 35/63 (55%), Positives = 46/63 (73%), Gaps = 3/63 (4%)
Query: 3 LKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSSTTQGRLDSFFTIR---REEKR 59
LKWS+PDE+GLV+++CG+K F EDR+RN K+L K+R +TQGRLD FF + KR
Sbjct: 296 LKWSEPDEEGLVEFMCGEKQFNEDRVRNAVKRLSKSRQGSTQGRLDDFFKVTGCLTSAKR 355
Query: 60 KAP 62
K P
Sbjct: 356 KEP 358
Score = 78.6 bits (192), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 32/55 (58%), Positives = 44/55 (80%)
Query: 405 EQGKLKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSTTTQGRLDSFFTI 459
E +LKWS+PDE+GLV+++CG+K F EDR+RN K+L K+R +TQGRLD FF +
Sbjct: 292 EAVELKWSEPDEEGLVEFMCGEKQFNEDRVRNAVKRLSKSRQGSTQGRLDDFFKV 346
>gi|61680058|pdb|1UL1|X Chain X, Crystal Structure Of The Human Fen1-Pcna Complex
gi|61680059|pdb|1UL1|Y Chain Y, Crystal Structure Of The Human Fen1-Pcna Complex
gi|61680060|pdb|1UL1|Z Chain Z, Crystal Structure Of The Human Fen1-Pcna Complex
Length = 379
Score = 213 bits (543), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 94/142 (66%), Positives = 120/142 (84%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVLE 120
AP EAEA CAA+VKAGKVYA ATEDMD LTFGS +L+RH+T SEA+KLP+QEFHL ++L+
Sbjct: 154 APSEAEASCAALVKAGKVYAAATEDMDCLTFGSPVLMRHLTASEAKKLPIQEFHLSRILQ 213
Query: 121 GMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGW 180
+ L+ E+F+DLCILLG DYC+SIRGIGPKRA++LI++H+SIE+I+ +D KY VPE W
Sbjct: 214 ELGLNQEQFVDLCILLGSDYCESIRGIGPKRAVDLIQKHKSIEEIVRRLDPNKYPVPENW 273
Query: 181 LYKEARELFRHPEVADPETIEF 202
L+KEA +LF PEV DPE++E
Sbjct: 274 LHKEAHQLFLEPEVLDPESVEL 295
Score = 134 bits (338), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 64/99 (64%), Positives = 80/99 (80%), Gaps = 7/99 (7%)
Query: 304 ELVADVAPSSIRES-------RKICIDASMSLYQFLIAVRSEGNQLMSVDGEPTSHLMGT 356
+L+ADVAPS+IRE+ RK+ IDASMS+YQFLIAVR G+ L + +GE TSHLMG
Sbjct: 7 KLIADVAPSAIRENDIKSYFGRKVAIDASMSIYQFLIAVRQGGDVLQNEEGETTSHLMGM 66
Query: 357 FYRTIRLVEHGLKPIYVFDGKPPTLKSGELNKRMEKRED 395
FYRTIR++E+G+KP+YVFDGKPP LKSGEL KR E+R +
Sbjct: 67 FYRTIRMMENGIKPVYVFDGKPPQLKSGELAKRSERRAE 105
Score = 116 bits (290), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 48/74 (64%), Positives = 63/74 (85%)
Query: 232 FIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGWLYKEAREL 291
F+DLCILLG DYC+SIRGIGPKRA++LI++H+SIE+I+ +D KY VPE WL+KEA +L
Sbjct: 222 FVDLCILLGSDYCESIRGIGPKRAVDLIQKHKSIEEIVRRLDPNKYPVPENWLHKEAHQL 281
Query: 292 FRHPEIADPETIEL 305
F PE+ DPE++EL
Sbjct: 282 FLEPEVLDPESVEL 295
Score = 75.9 bits (185), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 37/83 (44%), Positives = 56/83 (67%), Gaps = 11/83 (13%)
Query: 3 LKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSSTTQGRLDSFFTI--------R 54
LKWS+P+E+ L+K++CG+K F+E+RIR+G K+L K+R +TQGRLD FF + R
Sbjct: 295 LKWSEPNEEELIKFMCGEKQFSEERIRSGVKRLSKSRQGSTQGRLDDFFKVTGSLSSAKR 354
Query: 55 REEKRKAPCEAEAQCAAMVKAGK 77
+E + K + +A+ A AGK
Sbjct: 355 KEPEPKGSTKKKAKTGA---AGK 374
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 30/55 (54%), Positives = 45/55 (81%)
Query: 405 EQGKLKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSTTTQGRLDSFFTI 459
E +LKWS+P+E+ L+K++CG+K F+E+RIR+G K+L K+R +TQGRLD FF +
Sbjct: 291 ESVELKWSEPNEEELIKFMCGEKQFSEERIRSGVKRLSKSRQGSTQGRLDDFFKV 345
>gi|440901464|gb|ELR52399.1| Flap endonuclease 1 [Bos grunniens mutus]
Length = 380
Score = 213 bits (543), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 94/142 (66%), Positives = 121/142 (85%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVLE 120
AP EAEA CAA+VKAGKVYA ATEDMD LTFGS +L+RH+T SEA+KLP+QEFHL ++L+
Sbjct: 155 APSEAEASCAALVKAGKVYAAATEDMDCLTFGSPVLMRHLTASEAKKLPIQEFHLSRILQ 214
Query: 121 GMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGW 180
+ L+ E+F+DLCILLG DYC+SIRGIGPKRA++LI++H+SIE+I+ +D KY VPE W
Sbjct: 215 ELGLNQEQFVDLCILLGSDYCESIRGIGPKRAVDLIQKHKSIEEIVRRLDPNKYPVPENW 274
Query: 181 LYKEARELFRHPEVADPETIEF 202
L+KEA++LF PEV DPE++E
Sbjct: 275 LHKEAQQLFLEPEVLDPESVEL 296
Score = 139 bits (350), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 67/104 (64%), Positives = 84/104 (80%), Gaps = 7/104 (6%)
Query: 304 ELVADVAPSSIRES-------RKICIDASMSLYQFLIAVRSEGNQLMSVDGEPTSHLMGT 356
+L+ADVAPS+IRE+ RK+ IDASMS+YQFLIAVR G+ L + +GE TSHLMG
Sbjct: 8 KLIADVAPSAIRENDIKSYFGRKVAIDASMSIYQFLIAVRQGGDVLQNEEGETTSHLMGM 67
Query: 357 FYRTIRLVEHGLKPIYVFDGKPPTLKSGELNKRMEKREDAQKAL 400
FYRTIR++E+G+KP+YVFDGKPP LKSGEL KR E+R +A+K L
Sbjct: 68 FYRTIRMMENGIKPVYVFDGKPPQLKSGELAKRSERRAEAEKQL 111
Score = 116 bits (291), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 48/74 (64%), Positives = 64/74 (86%)
Query: 232 FIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGWLYKEAREL 291
F+DLCILLG DYC+SIRGIGPKRA++LI++H+SIE+I+ +D KY VPE WL+KEA++L
Sbjct: 223 FVDLCILLGSDYCESIRGIGPKRAVDLIQKHKSIEEIVRRLDPNKYPVPENWLHKEAQQL 282
Query: 292 FRHPEIADPETIEL 305
F PE+ DPE++EL
Sbjct: 283 FLEPEVLDPESVEL 296
Score = 75.1 bits (183), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 33/63 (52%), Positives = 47/63 (74%), Gaps = 3/63 (4%)
Query: 3 LKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSSTTQGRLDSFFTIR---REEKR 59
LKWS+P+E+ LVK++CG+K F+E+RIR+G ++L K+R +TQGRLD FF + KR
Sbjct: 296 LKWSEPNEEELVKFMCGEKQFSEERIRSGVRRLSKSRQGSTQGRLDDFFKVTGSLSSAKR 355
Query: 60 KAP 62
K P
Sbjct: 356 KEP 358
Score = 74.3 bits (181), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 30/55 (54%), Positives = 45/55 (81%)
Query: 405 EQGKLKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSTTTQGRLDSFFTI 459
E +LKWS+P+E+ LVK++CG+K F+E+RIR+G ++L K+R +TQGRLD FF +
Sbjct: 292 ESVELKWSEPNEEELVKFMCGEKQFSEERIRSGVRRLSKSRQGSTQGRLDDFFKV 346
>gi|75057714|sp|Q58DH8.1|FEN1_BOVIN RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|61553325|gb|AAX46387.1| flap structure-specific endonuclease 1 [Bos taurus]
gi|61553832|gb|AAX46466.1| flap structure-specific endonuclease 1 [Bos taurus]
gi|61554710|gb|AAX46602.1| flap structure-specific endonuclease 1 [Bos taurus]
gi|296471658|tpg|DAA13773.1| TPA: flap endonuclease 1 [Bos taurus]
Length = 380
Score = 213 bits (543), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 94/142 (66%), Positives = 121/142 (85%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVLE 120
AP EAEA CAA+VKAGKVYA ATEDMD LTFGS +L+RH+T SEA+KLP+QEFHL ++L+
Sbjct: 155 APSEAEASCAALVKAGKVYAAATEDMDCLTFGSPVLMRHLTASEAKKLPIQEFHLSRILQ 214
Query: 121 GMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGW 180
+ L+ E+F+DLCILLG DYC+SIRGIGPKRA++LI++H+SIE+I+ +D KY VPE W
Sbjct: 215 ELGLNQEQFVDLCILLGSDYCESIRGIGPKRAVDLIQKHKSIEEIVRRLDPNKYPVPENW 274
Query: 181 LYKEARELFRHPEVADPETIEF 202
L+KEA++LF PEV DPE++E
Sbjct: 275 LHKEAQQLFLEPEVLDPESVEL 296
Score = 139 bits (350), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 67/104 (64%), Positives = 84/104 (80%), Gaps = 7/104 (6%)
Query: 304 ELVADVAPSSIRES-------RKICIDASMSLYQFLIAVRSEGNQLMSVDGEPTSHLMGT 356
+L+ADVAPS+IRE+ RK+ IDASMS+YQFLIAVR G+ L + +GE TSHLMG
Sbjct: 8 KLIADVAPSAIRENDIKSYFGRKVAIDASMSIYQFLIAVRQGGDVLQNEEGETTSHLMGM 67
Query: 357 FYRTIRLVEHGLKPIYVFDGKPPTLKSGELNKRMEKREDAQKAL 400
FYRTIR++E+G+KP+YVFDGKPP LKSGEL KR E+R +A+K L
Sbjct: 68 FYRTIRMMENGIKPVYVFDGKPPQLKSGELAKRSERRAEAEKQL 111
Score = 116 bits (290), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 48/74 (64%), Positives = 64/74 (86%)
Query: 232 FIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGWLYKEAREL 291
F+DLCILLG DYC+SIRGIGPKRA++LI++H+SIE+I+ +D KY VPE WL+KEA++L
Sbjct: 223 FVDLCILLGSDYCESIRGIGPKRAVDLIQKHKSIEEIVRRLDPNKYPVPENWLHKEAQQL 282
Query: 292 FRHPEIADPETIEL 305
F PE+ DPE++EL
Sbjct: 283 FLEPEVLDPESVEL 296
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 32/63 (50%), Positives = 47/63 (74%), Gaps = 3/63 (4%)
Query: 3 LKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSSTTQGRLDSFFTIR---REEKR 59
LKWS+P+E+ L+K++CG+K F+E+RIR+G ++L K+R +TQGRLD FF + KR
Sbjct: 296 LKWSEPNEEELIKFMCGEKQFSEERIRSGVRRLSKSRQGSTQGRLDDFFKVTGSLSSAKR 355
Query: 60 KAP 62
K P
Sbjct: 356 KEP 358
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 29/55 (52%), Positives = 45/55 (81%)
Query: 405 EQGKLKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSTTTQGRLDSFFTI 459
E +LKWS+P+E+ L+K++CG+K F+E+RIR+G ++L K+R +TQGRLD FF +
Sbjct: 292 ESVELKWSEPNEEELIKFMCGEKQFSEERIRSGVRRLSKSRQGSTQGRLDDFFKV 346
>gi|388454741|ref|NP_001252879.1| flap endonuclease 1 [Macaca mulatta]
gi|402893159|ref|XP_003909769.1| PREDICTED: flap endonuclease 1 isoform 1 [Papio anubis]
gi|402893161|ref|XP_003909770.1| PREDICTED: flap endonuclease 1 isoform 2 [Papio anubis]
gi|75076152|sp|Q4R5U5.1|FEN1_MACFA RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|67970375|dbj|BAE01530.1| unnamed protein product [Macaca fascicularis]
gi|355566422|gb|EHH22801.1| Flap endonuclease 1 [Macaca mulatta]
gi|355752043|gb|EHH56163.1| Flap endonuclease 1 [Macaca fascicularis]
gi|380787489|gb|AFE65620.1| flap endonuclease 1 [Macaca mulatta]
gi|383413161|gb|AFH29794.1| flap endonuclease 1 [Macaca mulatta]
gi|384939550|gb|AFI33380.1| flap endonuclease 1 [Macaca mulatta]
Length = 380
Score = 213 bits (543), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 94/142 (66%), Positives = 120/142 (84%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVLE 120
AP EAEA CAA+VKAGKVYA ATEDMD LTFGS +L+RH+T SEA+KLP+QEFHL ++L+
Sbjct: 155 APSEAEASCAALVKAGKVYAAATEDMDCLTFGSPVLMRHLTASEAKKLPIQEFHLSRILQ 214
Query: 121 GMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGW 180
+ L+ E+F+DLCILLG DYC+SIRGIGPKRA++LI++H+SIE+I+ +D KY VPE W
Sbjct: 215 ELGLNQEQFVDLCILLGSDYCESIRGIGPKRAVDLIQKHKSIEEIVRRLDPSKYPVPENW 274
Query: 181 LYKEARELFRHPEVADPETIEF 202
L+KEA +LF PEV DPE++E
Sbjct: 275 LHKEAHQLFLKPEVLDPESVEL 296
Score = 134 bits (338), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 64/99 (64%), Positives = 80/99 (80%), Gaps = 7/99 (7%)
Query: 304 ELVADVAPSSIRES-------RKICIDASMSLYQFLIAVRSEGNQLMSVDGEPTSHLMGT 356
+L+ADVAPS+IRE+ RK+ IDASMS+YQFLIAVR G+ L + +GE TSHLMG
Sbjct: 8 KLIADVAPSAIRENDIKSYFGRKVAIDASMSIYQFLIAVRQGGDVLQNEEGETTSHLMGM 67
Query: 357 FYRTIRLVEHGLKPIYVFDGKPPTLKSGELNKRMEKRED 395
FYRTIR++E+G+KP+YVFDGKPP LKSGEL KR E+R +
Sbjct: 68 FYRTIRMMENGIKPVYVFDGKPPQLKSGELAKRSERRAE 106
Score = 116 bits (290), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 48/74 (64%), Positives = 63/74 (85%)
Query: 232 FIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGWLYKEAREL 291
F+DLCILLG DYC+SIRGIGPKRA++LI++H+SIE+I+ +D KY VPE WL+KEA +L
Sbjct: 223 FVDLCILLGSDYCESIRGIGPKRAVDLIQKHKSIEEIVRRLDPSKYPVPENWLHKEAHQL 282
Query: 292 FRHPEIADPETIEL 305
F PE+ DPE++EL
Sbjct: 283 FLKPEVLDPESVEL 296
Score = 76.6 bits (187), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 38/83 (45%), Positives = 56/83 (67%), Gaps = 11/83 (13%)
Query: 3 LKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSSTTQGRLDSFFTI--------R 54
LKWS+P+E+ LVK++CG+K F+E+RIR+G K+L K+R +TQGRLD FF + R
Sbjct: 296 LKWSEPNEEELVKFMCGEKQFSEERIRSGVKRLSKSRQGSTQGRLDDFFKVTGSLSSAKR 355
Query: 55 REEKRKAPCEAEAQCAAMVKAGK 77
+E + K + +A+ A AGK
Sbjct: 356 KEPEPKGSTKKKAKTGA---AGK 375
Score = 75.1 bits (183), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 31/55 (56%), Positives = 45/55 (81%)
Query: 405 EQGKLKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSTTTQGRLDSFFTI 459
E +LKWS+P+E+ LVK++CG+K F+E+RIR+G K+L K+R +TQGRLD FF +
Sbjct: 292 ESVELKWSEPNEEELVKFMCGEKQFSEERIRSGVKRLSKSRQGSTQGRLDDFFKV 346
>gi|194377686|dbj|BAG63206.1| unnamed protein product [Homo sapiens]
Length = 344
Score = 213 bits (542), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 94/142 (66%), Positives = 120/142 (84%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVLE 120
AP EAEA CAA+VKAGKVYA ATEDMD LTFGS +L+RH+T SEA+KLP+QEFHL ++L+
Sbjct: 119 APSEAEASCAALVKAGKVYAAATEDMDCLTFGSPVLMRHLTASEAKKLPIQEFHLSRILQ 178
Query: 121 GMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGW 180
+ L+ E+F+DLCILLG DYC+SIRGIGPKRA++LI++H+SIE+I+ +D KY VPE W
Sbjct: 179 ELGLNQEQFVDLCILLGSDYCESIRGIGPKRAVDLIQKHKSIEEIVRRLDPNKYPVPENW 238
Query: 181 LYKEARELFRHPEVADPETIEF 202
L+KEA +LF PEV DPE++E
Sbjct: 239 LHKEAHQLFLEPEVLDPESVEL 260
Score = 116 bits (290), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 48/74 (64%), Positives = 63/74 (85%)
Query: 232 FIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGWLYKEAREL 291
F+DLCILLG DYC+SIRGIGPKRA++LI++H+SIE+I+ +D KY VPE WL+KEA +L
Sbjct: 187 FVDLCILLGSDYCESIRGIGPKRAVDLIQKHKSIEEIVRRLDPNKYPVPENWLHKEAHQL 246
Query: 292 FRHPEIADPETIEL 305
F PE+ DPE++EL
Sbjct: 247 FLEPEVLDPESVEL 260
Score = 107 bits (266), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 48/70 (68%), Positives = 59/70 (84%)
Query: 326 MSLYQFLIAVRSEGNQLMSVDGEPTSHLMGTFYRTIRLVEHGLKPIYVFDGKPPTLKSGE 385
MS+YQFLIAVR G+ L + +GE TSHLMG FYRTIR++E+G+KP+YVFDGKPP LKSGE
Sbjct: 1 MSIYQFLIAVRQGGDVLQNEEGETTSHLMGMFYRTIRMMENGIKPVYVFDGKPPQLKSGE 60
Query: 386 LNKRMEKRED 395
L KR E+R +
Sbjct: 61 LAKRSERRAE 70
Score = 76.3 bits (186), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 37/83 (44%), Positives = 56/83 (67%), Gaps = 11/83 (13%)
Query: 3 LKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSSTTQGRLDSFFTI--------R 54
LKWS+P+E+ L+K++CG+K F+E+RIR+G K+L K+R +TQGRLD FF + R
Sbjct: 260 LKWSEPNEEELIKFMCGEKQFSEERIRSGVKRLSKSRQGSTQGRLDDFFKVTGSLSSAKR 319
Query: 55 REEKRKAPCEAEAQCAAMVKAGK 77
+E + K + +A+ A AGK
Sbjct: 320 KEPEPKGSTKKKAKTGA---AGK 339
Score = 74.7 bits (182), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 30/55 (54%), Positives = 45/55 (81%)
Query: 405 EQGKLKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSTTTQGRLDSFFTI 459
E +LKWS+P+E+ L+K++CG+K F+E+RIR+G K+L K+R +TQGRLD FF +
Sbjct: 256 ESVELKWSEPNEEELIKFMCGEKQFSEERIRSGVKRLSKSRQGSTQGRLDDFFKV 310
>gi|78042574|ref|NP_001030285.1| flap endonuclease 1 [Bos taurus]
gi|61553249|gb|AAX46374.1| flap structure-specific endonuclease 1 [Bos taurus]
Length = 380
Score = 213 bits (542), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 94/142 (66%), Positives = 121/142 (85%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVLE 120
AP EAEA CAA+VKAGKVYA ATEDMD LTFGS +L+RH+T SEA+KLP+QEFHL ++L+
Sbjct: 155 APSEAEASCAALVKAGKVYAAATEDMDCLTFGSPVLMRHLTASEAKKLPIQEFHLSRILQ 214
Query: 121 GMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGW 180
+ L+ E+F+DLCILLG DYC+SIRGIGPKRA++LI++H+SIE+I+ +D KY VPE W
Sbjct: 215 ELGLNQEQFVDLCILLGSDYCESIRGIGPKRAMDLIQKHKSIEEIVRRLDPNKYPVPENW 274
Query: 181 LYKEARELFRHPEVADPETIEF 202
L+KEA++LF PEV DPE++E
Sbjct: 275 LHKEAQQLFLEPEVLDPESVEL 296
Score = 139 bits (350), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 67/104 (64%), Positives = 84/104 (80%), Gaps = 7/104 (6%)
Query: 304 ELVADVAPSSIRES-------RKICIDASMSLYQFLIAVRSEGNQLMSVDGEPTSHLMGT 356
+L+ADVAPS+IRE+ RK+ IDASMS+YQFLIAVR G+ L + +GE TSHLMG
Sbjct: 8 KLIADVAPSAIRENDIKSYFGRKVAIDASMSIYQFLIAVRQGGDVLQNEEGETTSHLMGM 67
Query: 357 FYRTIRLVEHGLKPIYVFDGKPPTLKSGELNKRMEKREDAQKAL 400
FYRTIR++E+G+KP+YVFDGKPP LKSGEL KR E+R +A+K L
Sbjct: 68 FYRTIRMMENGIKPVYVFDGKPPQLKSGELAKRSERRAEAEKQL 111
Score = 115 bits (289), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 48/74 (64%), Positives = 64/74 (86%)
Query: 232 FIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGWLYKEAREL 291
F+DLCILLG DYC+SIRGIGPKRA++LI++H+SIE+I+ +D KY VPE WL+KEA++L
Sbjct: 223 FVDLCILLGSDYCESIRGIGPKRAMDLIQKHKSIEEIVRRLDPNKYPVPENWLHKEAQQL 282
Query: 292 FRHPEIADPETIEL 305
F PE+ DPE++EL
Sbjct: 283 FLEPEVLDPESVEL 296
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 32/63 (50%), Positives = 46/63 (73%), Gaps = 3/63 (4%)
Query: 3 LKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSSTTQGRLDSFFTIR---REEKR 59
LKWS+P+E L+K++CG+K F+E+RIR+G ++L K+R +TQGRLD FF + KR
Sbjct: 296 LKWSEPNEKELIKFMCGEKQFSEERIRSGVRRLSKSRQGSTQGRLDDFFKVTGSLSSAKR 355
Query: 60 KAP 62
K P
Sbjct: 356 KEP 358
Score = 72.8 bits (177), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 29/55 (52%), Positives = 44/55 (80%)
Query: 405 EQGKLKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSTTTQGRLDSFFTI 459
E +LKWS+P+E L+K++CG+K F+E+RIR+G ++L K+R +TQGRLD FF +
Sbjct: 292 ESVELKWSEPNEKELIKFMCGEKQFSEERIRSGVRRLSKSRQGSTQGRLDDFFKV 346
>gi|75775305|gb|AAI05256.1| Flap structure-specific endonuclease 1 [Bos taurus]
Length = 380
Score = 213 bits (542), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 94/142 (66%), Positives = 121/142 (85%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVLE 120
AP EAEA CAA+VKAGKVYA ATEDMD LTFGS +L+RH+T SEA+KLP+QEFHL ++L+
Sbjct: 155 APSEAEASCAALVKAGKVYAAATEDMDCLTFGSPVLMRHLTASEAKKLPIQEFHLSRILQ 214
Query: 121 GMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGW 180
+ L+ E+F+DLCILLG DYC+SIRGIGPKRA++LI++H+SIE+I+ +D KY VPE W
Sbjct: 215 ELGLNQEQFVDLCILLGSDYCESIRGIGPKRAMDLIQKHKSIEEIVRRLDPNKYPVPENW 274
Query: 181 LYKEARELFRHPEVADPETIEF 202
L+KEA++LF PEV DPE++E
Sbjct: 275 LHKEAQQLFLEPEVLDPESVEL 296
Score = 139 bits (350), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 67/104 (64%), Positives = 84/104 (80%), Gaps = 7/104 (6%)
Query: 304 ELVADVAPSSIRES-------RKICIDASMSLYQFLIAVRSEGNQLMSVDGEPTSHLMGT 356
+L+ADVAPS+IRE+ RK+ IDASMS+YQFLIAVR G+ L + +GE TSHLMG
Sbjct: 8 KLIADVAPSAIRENDIKSYFGRKVAIDASMSIYQFLIAVRQGGDVLQNEEGETTSHLMGM 67
Query: 357 FYRTIRLVEHGLKPIYVFDGKPPTLKSGELNKRMEKREDAQKAL 400
FYRTIR++E+G+KP+YVFDGKPP LKSGEL KR E+R +A+K L
Sbjct: 68 FYRTIRMMENGIKPVYVFDGKPPQLKSGELAKRSERRAEAEKQL 111
Score = 115 bits (289), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 48/74 (64%), Positives = 64/74 (86%)
Query: 232 FIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGWLYKEAREL 291
F+DLCILLG DYC+SIRGIGPKRA++LI++H+SIE+I+ +D KY VPE WL+KEA++L
Sbjct: 223 FVDLCILLGSDYCESIRGIGPKRAMDLIQKHKSIEEIVRRLDPNKYPVPENWLHKEAQQL 282
Query: 292 FRHPEIADPETIEL 305
F PE+ DPE++EL
Sbjct: 283 FLEPEVLDPESVEL 296
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 32/63 (50%), Positives = 47/63 (74%), Gaps = 3/63 (4%)
Query: 3 LKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSSTTQGRLDSFFTIR---REEKR 59
LKWS+P+E+ L+K++CG+K F+E+RIR+G ++L K+R +TQGRLD FF + KR
Sbjct: 296 LKWSEPNEEELIKFMCGEKQFSEERIRSGVRRLSKSRQGSTQGRLDDFFKVTGSLSSAKR 355
Query: 60 KAP 62
K P
Sbjct: 356 KEP 358
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 29/55 (52%), Positives = 45/55 (81%)
Query: 405 EQGKLKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSTTTQGRLDSFFTI 459
E +LKWS+P+E+ L+K++CG+K F+E+RIR+G ++L K+R +TQGRLD FF +
Sbjct: 292 ESVELKWSEPNEEELIKFMCGEKQFSEERIRSGVRRLSKSRQGSTQGRLDDFFKV 346
>gi|395852526|ref|XP_003798789.1| PREDICTED: flap endonuclease 1 [Otolemur garnettii]
Length = 380
Score = 213 bits (541), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 93/142 (65%), Positives = 120/142 (84%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVLE 120
AP EAEA CAA+VKAGKVYA ATEDMD LTFGS +L+RH+T SEA+KLP+QEFHL ++L+
Sbjct: 155 APSEAEASCAALVKAGKVYAAATEDMDCLTFGSPVLMRHLTASEAKKLPIQEFHLNRILQ 214
Query: 121 GMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGW 180
+ L+ E+F+DLCILLG DYC+SIRGIGPKRA++LI++H+SIE+I+ +D KY +PE W
Sbjct: 215 ELGLNQEQFVDLCILLGSDYCESIRGIGPKRAVDLIQKHKSIEEIVRRLDPNKYPIPENW 274
Query: 181 LYKEARELFRHPEVADPETIEF 202
L+KEA +LF PEV DPE++E
Sbjct: 275 LHKEAHQLFLEPEVLDPESVEL 296
Score = 133 bits (335), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 63/99 (63%), Positives = 79/99 (79%), Gaps = 7/99 (7%)
Query: 304 ELVADVAPSSIRES-------RKICIDASMSLYQFLIAVRSEGNQLMSVDGEPTSHLMGT 356
+L+ADVAPS+IRE+ RK+ IDASMS+YQFLIAVR G L + +GE TSHLMG
Sbjct: 8 KLIADVAPSAIRENDIKSYFGRKVAIDASMSIYQFLIAVRQGGEVLQNEEGETTSHLMGM 67
Query: 357 FYRTIRLVEHGLKPIYVFDGKPPTLKSGELNKRMEKRED 395
FYRTIR++E+G+KP+Y+FDGKPP LKSGEL KR E+R +
Sbjct: 68 FYRTIRMMENGIKPVYIFDGKPPQLKSGELAKRSERRAE 106
Score = 115 bits (288), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 47/74 (63%), Positives = 63/74 (85%)
Query: 232 FIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGWLYKEAREL 291
F+DLCILLG DYC+SIRGIGPKRA++LI++H+SIE+I+ +D KY +PE WL+KEA +L
Sbjct: 223 FVDLCILLGSDYCESIRGIGPKRAVDLIQKHKSIEEIVRRLDPNKYPIPENWLHKEAHQL 282
Query: 292 FRHPEIADPETIEL 305
F PE+ DPE++EL
Sbjct: 283 FLEPEVLDPESVEL 296
Score = 75.9 bits (185), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 34/63 (53%), Positives = 47/63 (74%), Gaps = 3/63 (4%)
Query: 3 LKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSSTTQGRLDSFFTIR---REEKR 59
LKWS+P+E+ LVK++CG+K F+E+RIR+G K+L K+R +TQGRLD FF + KR
Sbjct: 296 LKWSEPNEEELVKFMCGEKQFSEERIRSGVKRLSKSRQGSTQGRLDDFFKVTGSLSSAKR 355
Query: 60 KAP 62
K P
Sbjct: 356 KEP 358
Score = 75.1 bits (183), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 31/55 (56%), Positives = 45/55 (81%)
Query: 405 EQGKLKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSTTTQGRLDSFFTI 459
E +LKWS+P+E+ LVK++CG+K F+E+RIR+G K+L K+R +TQGRLD FF +
Sbjct: 292 ESVELKWSEPNEEELVKFMCGEKQFSEERIRSGVKRLSKSRQGSTQGRLDDFFKV 346
>gi|432089490|gb|ELK23431.1| Flap endonuclease 1 [Myotis davidii]
Length = 380
Score = 213 bits (541), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 94/142 (66%), Positives = 120/142 (84%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVLE 120
AP EAEA CAA+VKAGKVYA ATEDMD LTFGS +L+RH+T SEA+KLP+QEFHL ++L+
Sbjct: 155 APSEAEASCAALVKAGKVYAAATEDMDCLTFGSPVLMRHLTASEAKKLPIQEFHLSRILQ 214
Query: 121 GMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGW 180
+ L+ E+F+DLCILLG DYC+SIRGIGPKRA++LI++H+SIE+I+ +D KY VPE W
Sbjct: 215 ELGLNQEQFVDLCILLGSDYCESIRGIGPKRAVDLIQKHKSIEEIVRRLDPNKYPVPENW 274
Query: 181 LYKEARELFRHPEVADPETIEF 202
L+KEA++LF PEV DPE +E
Sbjct: 275 LHKEAQQLFLAPEVLDPEAVEL 296
Score = 145 bits (365), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 70/111 (63%), Positives = 88/111 (79%), Gaps = 7/111 (6%)
Query: 304 ELVADVAPSSIRES-------RKICIDASMSLYQFLIAVRSEGNQLMSVDGEPTSHLMGT 356
+L+ADVAPS+IRE+ RK+ IDASMS+YQFLIAVR G+ L + +GE TSHLMG
Sbjct: 8 KLIADVAPSAIRENDIKSYFGRKVAIDASMSIYQFLIAVRQGGDVLQNEEGETTSHLMGM 67
Query: 357 FYRTIRLVEHGLKPIYVFDGKPPTLKSGELNKRMEKREDAQKALAKAQEQG 407
FYRTIR++E+G+KP+YVFDGKPP LKSGEL KR E+R +A+K L +AQ G
Sbjct: 68 FYRTIRMIENGIKPVYVFDGKPPQLKSGELAKRSERRAEAEKQLHQAQAAG 118
Score = 115 bits (289), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 48/74 (64%), Positives = 63/74 (85%)
Query: 232 FIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGWLYKEAREL 291
F+DLCILLG DYC+SIRGIGPKRA++LI++H+SIE+I+ +D KY VPE WL+KEA++L
Sbjct: 223 FVDLCILLGSDYCESIRGIGPKRAVDLIQKHKSIEEIVRRLDPNKYPVPENWLHKEAQQL 282
Query: 292 FRHPEIADPETIEL 305
F PE+ DPE +EL
Sbjct: 283 FLAPEVLDPEAVEL 296
Score = 72.0 bits (175), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 32/65 (49%), Positives = 47/65 (72%), Gaps = 3/65 (4%)
Query: 1 MTLKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSSTTQGRLDSFFTIR---REE 57
+ LKWS+P E+ LVK++CG+K F+E+RIR+G ++L K+R +TQGRL+ FF +
Sbjct: 294 VELKWSEPKEEELVKFMCGEKQFSEERIRSGVRRLNKSRQGSTQGRLEDFFKVTGSLSSA 353
Query: 58 KRKAP 62
KRK P
Sbjct: 354 KRKEP 358
Score = 71.2 bits (173), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 29/55 (52%), Positives = 44/55 (80%)
Query: 405 EQGKLKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSTTTQGRLDSFFTI 459
E +LKWS+P E+ LVK++CG+K F+E+RIR+G ++L K+R +TQGRL+ FF +
Sbjct: 292 EAVELKWSEPKEEELVKFMCGEKQFSEERIRSGVRRLNKSRQGSTQGRLEDFFKV 346
>gi|332249905|ref|XP_003274094.1| PREDICTED: flap endonuclease 1 isoform 1 [Nomascus leucogenys]
gi|332249907|ref|XP_003274095.1| PREDICTED: flap endonuclease 1 isoform 2 [Nomascus leucogenys]
gi|441604271|ref|XP_004087863.1| PREDICTED: flap endonuclease 1 [Nomascus leucogenys]
Length = 380
Score = 213 bits (541), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 94/142 (66%), Positives = 119/142 (83%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVLE 120
AP EAEA CAA+VKAGKVYA ATEDMD LTFGS +L+RH+T SEA+KLP+QEFHL ++L+
Sbjct: 155 APSEAEASCAALVKAGKVYAAATEDMDCLTFGSPVLMRHLTASEAKKLPIQEFHLSRILQ 214
Query: 121 GMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGW 180
+ L+ E+F+DLCILLG DYC+SIRGIGPKRA++LI++H+SIE+I+ +D KY VPE W
Sbjct: 215 ELGLNQEQFVDLCILLGSDYCESIRGIGPKRAVDLIQKHKSIEEIVRRLDPNKYPVPENW 274
Query: 181 LYKEARELFRHPEVADPETIEF 202
L+KEA LF PEV DPE++E
Sbjct: 275 LHKEAHHLFLEPEVLDPESVEL 296
Score = 134 bits (338), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 64/99 (64%), Positives = 80/99 (80%), Gaps = 7/99 (7%)
Query: 304 ELVADVAPSSIRES-------RKICIDASMSLYQFLIAVRSEGNQLMSVDGEPTSHLMGT 356
+L+ADVAPS+IRE+ RK+ IDASMS+YQFLIAVR G+ L + +GE TSHLMG
Sbjct: 8 KLIADVAPSAIRENDIKSYFGRKVAIDASMSIYQFLIAVRQGGDVLQNEEGETTSHLMGM 67
Query: 357 FYRTIRLVEHGLKPIYVFDGKPPTLKSGELNKRMEKRED 395
FYRTIR++E+G+KP+YVFDGKPP LKSGEL KR E+R +
Sbjct: 68 FYRTIRMMENGIKPVYVFDGKPPQLKSGELAKRSERRAE 106
Score = 115 bits (289), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 48/74 (64%), Positives = 62/74 (83%)
Query: 232 FIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGWLYKEAREL 291
F+DLCILLG DYC+SIRGIGPKRA++LI++H+SIE+I+ +D KY VPE WL+KEA L
Sbjct: 223 FVDLCILLGSDYCESIRGIGPKRAVDLIQKHKSIEEIVRRLDPNKYPVPENWLHKEAHHL 282
Query: 292 FRHPEIADPETIEL 305
F PE+ DPE++EL
Sbjct: 283 FLEPEVLDPESVEL 296
Score = 76.6 bits (187), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 38/83 (45%), Positives = 56/83 (67%), Gaps = 11/83 (13%)
Query: 3 LKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSSTTQGRLDSFFTI--------R 54
LKWS+P+E+ LVK++CG+K F+E+RIR+G K+L K+R +TQGRLD FF + R
Sbjct: 296 LKWSEPNEEELVKFMCGEKQFSEERIRSGVKRLSKSRQGSTQGRLDDFFKVTGSLSSAKR 355
Query: 55 REEKRKAPCEAEAQCAAMVKAGK 77
+E + K + +A+ A AGK
Sbjct: 356 KEPEPKGSTKKKAKTGA---AGK 375
Score = 75.1 bits (183), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 31/55 (56%), Positives = 45/55 (81%)
Query: 405 EQGKLKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSTTTQGRLDSFFTI 459
E +LKWS+P+E+ LVK++CG+K F+E+RIR+G K+L K+R +TQGRLD FF +
Sbjct: 292 ESVELKWSEPNEEELVKFMCGEKQFSEERIRSGVKRLSKSRQGSTQGRLDDFFKV 346
>gi|26335423|dbj|BAC31412.1| unnamed protein product [Mus musculus]
Length = 380
Score = 213 bits (541), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 94/142 (66%), Positives = 120/142 (84%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVLE 120
AP EAEA CAA+ KAGKVYA ATEDMD LTFGS +L+RH+T SEA+KLP+QEFHL +VL+
Sbjct: 155 APSEAEASCAALAKAGKVYAAATEDMDCLTFGSPVLMRHLTASEAKKLPIQEFHLSRVLQ 214
Query: 121 GMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGW 180
+ L+ E+F+DLCILLG DYC+SIRGIGPKRA++LI++H+SIE+I+ +D KY VPE W
Sbjct: 215 ELGLNQEQFVDLCILLGSDYCESIRGIGPKRAVDLIQKHKSIEEIVRRLDPSKYPVPENW 274
Query: 181 LYKEARELFRHPEVADPETIEF 202
L+KEA++LF PEV DPE++E
Sbjct: 275 LHKEAQQLFLEPEVLDPESVEL 296
Score = 144 bits (363), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 70/110 (63%), Positives = 87/110 (79%), Gaps = 7/110 (6%)
Query: 305 LVADVAPSSIRES-------RKICIDASMSLYQFLIAVRSEGNQLMSVDGEPTSHLMGTF 357
L+ADVAPS+IRE+ RK+ IDASMS+YQFLIAVR G+ L + +GE TSHLMG F
Sbjct: 9 LIADVAPSAIRENDIKSYFGRKVAIDASMSIYQFLIAVRQGGDVLQNEEGETTSHLMGMF 68
Query: 358 YRTIRLVEHGLKPIYVFDGKPPTLKSGELNKRMEKREDAQKALAKAQEQG 407
YRTIR++E+G+KP+YV DGKPP LKSGEL KR E+R +A+K L +AQE G
Sbjct: 69 YRTIRMMENGIKPVYVLDGKPPQLKSGELAKRSERRAEAEKQLQQAQEAG 118
Score = 116 bits (291), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 48/74 (64%), Positives = 64/74 (86%)
Query: 232 FIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGWLYKEAREL 291
F+DLCILLG DYC+SIRGIGPKRA++LI++H+SIE+I+ +D KY VPE WL+KEA++L
Sbjct: 223 FVDLCILLGSDYCESIRGIGPKRAVDLIQKHKSIEEIVRRLDPSKYPVPENWLHKEAQQL 282
Query: 292 FRHPEIADPETIEL 305
F PE+ DPE++EL
Sbjct: 283 FLEPEVLDPESVEL 296
Score = 76.3 bits (186), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 34/63 (53%), Positives = 47/63 (74%), Gaps = 3/63 (4%)
Query: 3 LKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSSTTQGRLDSFFTIR---REEKR 59
LKWS+P+E+ LVK++CG+K F+E+RIR+G K+L K+R +TQGRLD FF + KR
Sbjct: 296 LKWSEPNEEELVKFMCGEKQFSEERIRSGVKRLSKSRQGSTQGRLDDFFKVTGSLSSAKR 355
Query: 60 KAP 62
K P
Sbjct: 356 KEP 358
Score = 75.5 bits (184), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 31/55 (56%), Positives = 45/55 (81%)
Query: 405 EQGKLKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSTTTQGRLDSFFTI 459
E +LKWS+P+E+ LVK++CG+K F+E+RIR+G K+L K+R +TQGRLD FF +
Sbjct: 292 ESVELKWSEPNEEELVKFMCGEKQFSEERIRSGVKRLSKSRQGSTQGRLDDFFKV 346
>gi|330689547|pdb|3Q8K|A Chain A, Crystal Structure Of Human Flap Endonuclease Fen1 (Wt) In
Complex With Product 5'-Flap Dna, Sm3+, And K+
gi|330689551|pdb|3Q8L|A Chain A, Crystal Structure Of Human Flap Endonuclease Fen1 (Wt) In
Complex With Substrate 5'-Flap Dna, Sm3+, And K+
Length = 341
Score = 213 bits (541), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 94/142 (66%), Positives = 120/142 (84%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVLE 120
AP EAEA CAA+VKAGKVYA ATEDMD LTFGS +L+RH+T SEA+KLP+QEFHL ++L+
Sbjct: 154 APSEAEASCAALVKAGKVYAAATEDMDCLTFGSPVLMRHLTASEAKKLPIQEFHLSRILQ 213
Query: 121 GMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGW 180
+ L+ E+F+DLCILLG DYC+SIRGIGPKRA++LI++H+SIE+I+ +D KY VPE W
Sbjct: 214 ELGLNQEQFVDLCILLGSDYCESIRGIGPKRAVDLIQKHKSIEEIVRRLDPNKYPVPENW 273
Query: 181 LYKEARELFRHPEVADPETIEF 202
L+KEA +LF PEV DPE++E
Sbjct: 274 LHKEAHQLFLEPEVLDPESVEL 295
Score = 134 bits (337), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 64/99 (64%), Positives = 80/99 (80%), Gaps = 7/99 (7%)
Query: 304 ELVADVAPSSIRES-------RKICIDASMSLYQFLIAVRSEGNQLMSVDGEPTSHLMGT 356
+L+ADVAPS+IRE+ RK+ IDASMS+YQFLIAVR G+ L + +GE TSHLMG
Sbjct: 7 KLIADVAPSAIRENDIKSYFGRKVAIDASMSIYQFLIAVRQGGDVLQNEEGETTSHLMGM 66
Query: 357 FYRTIRLVEHGLKPIYVFDGKPPTLKSGELNKRMEKRED 395
FYRTIR++E+G+KP+YVFDGKPP LKSGEL KR E+R +
Sbjct: 67 FYRTIRMMENGIKPVYVFDGKPPQLKSGELAKRSERRAE 105
Score = 115 bits (289), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 48/74 (64%), Positives = 63/74 (85%)
Query: 232 FIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGWLYKEAREL 291
F+DLCILLG DYC+SIRGIGPKRA++LI++H+SIE+I+ +D KY VPE WL+KEA +L
Sbjct: 222 FVDLCILLGSDYCESIRGIGPKRAVDLIQKHKSIEEIVRRLDPNKYPVPENWLHKEAHQL 281
Query: 292 FRHPEIADPETIEL 305
F PE+ DPE++EL
Sbjct: 282 FLEPEVLDPESVEL 295
Score = 58.5 bits (140), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 23/45 (51%), Positives = 37/45 (82%)
Query: 405 EQGKLKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSTTT 449
E +LKWS+P+E+ L+K++CG+K F+E+RIR+G K+L K+R +T
Sbjct: 291 ESVELKWSEPNEEELIKFMCGEKQFSEERIRSGVKRLSKSRQGST 335
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 22/41 (53%), Positives = 35/41 (85%)
Query: 3 LKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSSTT 43
LKWS+P+E+ L+K++CG+K F+E+RIR+G K+L K+R +T
Sbjct: 295 LKWSEPNEEELIKFMCGEKQFSEERIRSGVKRLSKSRQGST 335
>gi|46048490|ref|NP_032025.2| flap endonuclease 1 [Mus musculus]
gi|410025484|ref|NP_001258543.1| flap endonuclease 1 [Mus musculus]
gi|410025486|ref|NP_001258544.1| flap endonuclease 1 [Mus musculus]
gi|16307328|gb|AAH10203.1| Flap structure specific endonuclease 1 [Mus musculus]
gi|26337949|dbj|BAC32660.1| unnamed protein product [Mus musculus]
gi|26347483|dbj|BAC37390.1| unnamed protein product [Mus musculus]
gi|53791234|dbj|BAD52443.1| flap endonuclease 1 [Mus musculus]
gi|74145457|dbj|BAE36169.1| unnamed protein product [Mus musculus]
gi|74150381|dbj|BAE32236.1| unnamed protein product [Mus musculus]
gi|74185061|dbj|BAE39135.1| unnamed protein product [Mus musculus]
gi|148709396|gb|EDL41342.1| flap structure specific endonuclease 1, isoform CRA_c [Mus
musculus]
Length = 380
Score = 213 bits (541), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 94/142 (66%), Positives = 120/142 (84%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVLE 120
AP EAEA CAA+ KAGKVYA ATEDMD LTFGS +L+RH+T SEA+KLP+QEFHL +VL+
Sbjct: 155 APSEAEASCAALAKAGKVYAAATEDMDCLTFGSPVLMRHLTASEAKKLPIQEFHLSRVLQ 214
Query: 121 GMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGW 180
+ L+ E+F+DLCILLG DYC+SIRGIGPKRA++LI++H+SIE+I+ +D KY VPE W
Sbjct: 215 ELGLNQEQFVDLCILLGSDYCESIRGIGPKRAVDLIQKHKSIEEIVRRLDPSKYPVPENW 274
Query: 181 LYKEARELFRHPEVADPETIEF 202
L+KEA++LF PEV DPE++E
Sbjct: 275 LHKEAQQLFLEPEVLDPESVEL 296
Score = 146 bits (369), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 71/110 (64%), Positives = 88/110 (80%), Gaps = 7/110 (6%)
Query: 305 LVADVAPSSIRES-------RKICIDASMSLYQFLIAVRSEGNQLMSVDGEPTSHLMGTF 357
L+ADVAPS+IRE+ RK+ IDASMS+YQFLIAVR G+ L + +GE TSHLMG F
Sbjct: 9 LIADVAPSAIRENDIKSYFGRKVAIDASMSIYQFLIAVRQGGDVLQNEEGETTSHLMGMF 68
Query: 358 YRTIRLVEHGLKPIYVFDGKPPTLKSGELNKRMEKREDAQKALAKAQEQG 407
YRTIR++E+G+KP+YVFDGKPP LKSGEL KR E+R +A+K L +AQE G
Sbjct: 69 YRTIRMMENGIKPVYVFDGKPPQLKSGELAKRSERRAEAEKQLQQAQEAG 118
Score = 116 bits (291), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 48/74 (64%), Positives = 64/74 (86%)
Query: 232 FIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGWLYKEAREL 291
F+DLCILLG DYC+SIRGIGPKRA++LI++H+SIE+I+ +D KY VPE WL+KEA++L
Sbjct: 223 FVDLCILLGSDYCESIRGIGPKRAVDLIQKHKSIEEIVRRLDPSKYPVPENWLHKEAQQL 282
Query: 292 FRHPEIADPETIEL 305
F PE+ DPE++EL
Sbjct: 283 FLEPEVLDPESVEL 296
Score = 76.3 bits (186), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 34/63 (53%), Positives = 47/63 (74%), Gaps = 3/63 (4%)
Query: 3 LKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSSTTQGRLDSFFTIR---REEKR 59
LKWS+P+E+ LVK++CG+K F+E+RIR+G K+L K+R +TQGRLD FF + KR
Sbjct: 296 LKWSEPNEEELVKFMCGEKQFSEERIRSGVKRLSKSRQGSTQGRLDDFFKVTGSLSSAKR 355
Query: 60 KAP 62
K P
Sbjct: 356 KEP 358
Score = 75.5 bits (184), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 31/55 (56%), Positives = 45/55 (81%)
Query: 405 EQGKLKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSTTTQGRLDSFFTI 459
E +LKWS+P+E+ LVK++CG+K F+E+RIR+G K+L K+R +TQGRLD FF +
Sbjct: 292 ESVELKWSEPNEEELVKFMCGEKQFSEERIRSGVKRLSKSRQGSTQGRLDDFFKV 346
>gi|20071071|gb|AAH27295.1| Fen1 protein [Mus musculus]
Length = 380
Score = 212 bits (540), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 94/142 (66%), Positives = 120/142 (84%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVLE 120
AP EAEA CAA+ KAGKVYA ATEDMD LTFGS +L+RH+T SEA+KLP+QEFHL +VL+
Sbjct: 155 APSEAEASCAALAKAGKVYAAATEDMDCLTFGSPVLMRHLTASEAKKLPIQEFHLSRVLQ 214
Query: 121 GMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGW 180
+ L+ E+F+DLCILLG DYC+SIRGIGPKRA++LI++H+SIE+I+ +D KY VPE W
Sbjct: 215 ELGLNQEQFVDLCILLGSDYCESIRGIGPKRAVDLIQKHKSIEEIVRRLDPSKYPVPENW 274
Query: 181 LYKEARELFRHPEVADPETIEF 202
L+KEA++LF PEV DPE++E
Sbjct: 275 LHKEAQQLFLEPEVLDPESVEL 296
Score = 146 bits (369), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 71/110 (64%), Positives = 88/110 (80%), Gaps = 7/110 (6%)
Query: 305 LVADVAPSSIRES-------RKICIDASMSLYQFLIAVRSEGNQLMSVDGEPTSHLMGTF 357
L+ADVAPS+IRE+ RK+ IDASMS+YQFLIAVR G+ L + +GE TSHLMG F
Sbjct: 9 LIADVAPSAIRENDIKSYFGRKVAIDASMSIYQFLIAVRQGGDVLQNEEGETTSHLMGMF 68
Query: 358 YRTIRLVEHGLKPIYVFDGKPPTLKSGELNKRMEKREDAQKALAKAQEQG 407
YRTIR++E+G+KP+YVFDGKPP LKSGEL KR E+R +A+K L +AQE G
Sbjct: 69 YRTIRMMENGVKPVYVFDGKPPQLKSGELAKRSERRAEAEKQLQQAQEAG 118
Score = 116 bits (291), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 48/74 (64%), Positives = 64/74 (86%)
Query: 232 FIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGWLYKEAREL 291
F+DLCILLG DYC+SIRGIGPKRA++LI++H+SIE+I+ +D KY VPE WL+KEA++L
Sbjct: 223 FVDLCILLGSDYCESIRGIGPKRAVDLIQKHKSIEEIVRRLDPSKYPVPENWLHKEAQQL 282
Query: 292 FRHPEIADPETIEL 305
F PE+ DPE++EL
Sbjct: 283 FLEPEVLDPESVEL 296
Score = 76.3 bits (186), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 34/63 (53%), Positives = 47/63 (74%), Gaps = 3/63 (4%)
Query: 3 LKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSSTTQGRLDSFFTIR---REEKR 59
LKWS+P+E+ LVK++CG+K F+E+RIR+G K+L K+R +TQGRLD FF + KR
Sbjct: 296 LKWSEPNEEELVKFMCGEKQFSEERIRSGVKRLSKSRQGSTQGRLDDFFKVTGSLSSAKR 355
Query: 60 KAP 62
K P
Sbjct: 356 KEP 358
Score = 75.5 bits (184), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 31/55 (56%), Positives = 45/55 (81%)
Query: 405 EQGKLKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSTTTQGRLDSFFTI 459
E +LKWS+P+E+ LVK++CG+K F+E+RIR+G K+L K+R +TQGRLD FF +
Sbjct: 292 ESVELKWSEPNEEELVKFMCGEKQFSEERIRSGVKRLSKSRQGSTQGRLDDFFKV 346
>gi|355688549|gb|AER98539.1| flap structure-specific endonuclease 1 [Mustela putorius furo]
Length = 379
Score = 212 bits (540), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 94/142 (66%), Positives = 120/142 (84%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVLE 120
AP EAEA CAA+VKAGKVYA ATEDMD LTFGS +L+RH+T SEA+KLP+QEFHL ++L+
Sbjct: 155 APSEAEASCAALVKAGKVYAAATEDMDCLTFGSPVLMRHLTASEAKKLPIQEFHLSRILQ 214
Query: 121 GMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGW 180
+ LS E+F+DLCILLG DYC+SIRGIGP+RA+ LI++H+SIE+I+ +D KY VPE W
Sbjct: 215 ELGLSQEQFVDLCILLGSDYCESIRGIGPRRAVGLIQKHKSIEEIVRQLDPSKYPVPENW 274
Query: 181 LYKEARELFRHPEVADPETIEF 202
L+KEA++LF PEV DPE++E
Sbjct: 275 LHKEAQQLFLEPEVLDPESVEL 296
Score = 132 bits (333), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 63/99 (63%), Positives = 79/99 (79%), Gaps = 7/99 (7%)
Query: 304 ELVADVAPSSIRES-------RKICIDASMSLYQFLIAVRSEGNQLMSVDGEPTSHLMGT 356
+L+ADVAP +IRE+ RK+ IDASMS+YQFLIAVR G+ L + +GE TSHLMG
Sbjct: 8 KLIADVAPGAIRENDIKSYFGRKVAIDASMSIYQFLIAVRQGGDVLQNEEGETTSHLMGM 67
Query: 357 FYRTIRLVEHGLKPIYVFDGKPPTLKSGELNKRMEKRED 395
FYRTIR++E+G+KP+YVFDGKPP LKSGEL KR E+R +
Sbjct: 68 FYRTIRMMENGIKPVYVFDGKPPQLKSGELAKRSERRAE 106
Score = 114 bits (285), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 47/74 (63%), Positives = 63/74 (85%)
Query: 232 FIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGWLYKEAREL 291
F+DLCILLG DYC+SIRGIGP+RA+ LI++H+SIE+I+ +D KY VPE WL+KEA++L
Sbjct: 223 FVDLCILLGSDYCESIRGIGPRRAVGLIQKHKSIEEIVRQLDPSKYPVPENWLHKEAQQL 282
Query: 292 FRHPEIADPETIEL 305
F PE+ DPE++EL
Sbjct: 283 FLEPEVLDPESVEL 296
Score = 75.1 bits (183), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 33/63 (52%), Positives = 47/63 (74%), Gaps = 3/63 (4%)
Query: 3 LKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSSTTQGRLDSFFTIR---REEKR 59
LKWS+P+E+ LVK++CG+K F+E+RIR+G ++L K+R +TQGRLD FF + KR
Sbjct: 296 LKWSEPNEEELVKFMCGEKQFSEERIRSGVRRLSKSRQGSTQGRLDDFFKVTGSLSSAKR 355
Query: 60 KAP 62
K P
Sbjct: 356 KEP 358
Score = 74.3 bits (181), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 30/55 (54%), Positives = 45/55 (81%)
Query: 405 EQGKLKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSTTTQGRLDSFFTI 459
E +LKWS+P+E+ LVK++CG+K F+E+RIR+G ++L K+R +TQGRLD FF +
Sbjct: 292 ESVELKWSEPNEEELVKFMCGEKQFSEERIRSGVRRLSKSRQGSTQGRLDDFFKV 346
>gi|296218462|ref|XP_002755459.1| PREDICTED: flap endonuclease 1 [Callithrix jacchus]
Length = 380
Score = 212 bits (540), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 93/142 (65%), Positives = 120/142 (84%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVLE 120
AP EAEA CAA+VKAGKVYA ATEDMD LTFGS +L+RH+T SE++KLP+QEFHL ++L+
Sbjct: 155 APSEAEASCAALVKAGKVYAAATEDMDCLTFGSPVLMRHLTASESKKLPIQEFHLSRILQ 214
Query: 121 GMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGW 180
+ L+ E+F+DLCILLG DYC+SIRGIGPKRA++LI++H+SIE+I+ +D KY VPE W
Sbjct: 215 ELGLNQEQFVDLCILLGSDYCESIRGIGPKRAVDLIQKHKSIEEIVRRLDPNKYPVPENW 274
Query: 181 LYKEARELFRHPEVADPETIEF 202
L+KEA +LF PEV DPE++E
Sbjct: 275 LHKEAHQLFLEPEVLDPESVEL 296
Score = 134 bits (338), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 64/99 (64%), Positives = 80/99 (80%), Gaps = 7/99 (7%)
Query: 304 ELVADVAPSSIRES-------RKICIDASMSLYQFLIAVRSEGNQLMSVDGEPTSHLMGT 356
+L+ADVAPS+IRE+ RK+ IDASMS+YQFLIAVR G+ L + +GE TSHLMG
Sbjct: 8 KLIADVAPSAIRENDIKSYFGRKVAIDASMSIYQFLIAVRQGGDVLQNEEGETTSHLMGM 67
Query: 357 FYRTIRLVEHGLKPIYVFDGKPPTLKSGELNKRMEKRED 395
FYRTIR++E+G+KP+YVFDGKPP LKSGEL KR E+R +
Sbjct: 68 FYRTIRMMENGIKPVYVFDGKPPQLKSGELAKRSERRAE 106
Score = 116 bits (290), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 48/74 (64%), Positives = 63/74 (85%)
Query: 232 FIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGWLYKEAREL 291
F+DLCILLG DYC+SIRGIGPKRA++LI++H+SIE+I+ +D KY VPE WL+KEA +L
Sbjct: 223 FVDLCILLGSDYCESIRGIGPKRAVDLIQKHKSIEEIVRRLDPNKYPVPENWLHKEAHQL 282
Query: 292 FRHPEIADPETIEL 305
F PE+ DPE++EL
Sbjct: 283 FLEPEVLDPESVEL 296
Score = 75.9 bits (185), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 34/63 (53%), Positives = 47/63 (74%), Gaps = 3/63 (4%)
Query: 3 LKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSSTTQGRLDSFFTIR---REEKR 59
LKWS+P+E+ LVK++CG+K F+E+RIR+G K+L K+R +TQGRLD FF + KR
Sbjct: 296 LKWSEPNEEELVKFMCGEKQFSEERIRSGVKRLSKSRQGSTQGRLDDFFKVTGSLSSAKR 355
Query: 60 KAP 62
K P
Sbjct: 356 KEP 358
Score = 75.1 bits (183), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 31/55 (56%), Positives = 45/55 (81%)
Query: 405 EQGKLKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSTTTQGRLDSFFTI 459
E +LKWS+P+E+ LVK++CG+K F+E+RIR+G K+L K+R +TQGRLD FF +
Sbjct: 292 ESVELKWSEPNEEELVKFMCGEKQFSEERIRSGVKRLSKSRQGSTQGRLDDFFKV 346
>gi|357624246|gb|EHJ75100.1| flap endonuclease-1 [Danaus plexippus]
Length = 424
Score = 212 bits (540), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 105/187 (56%), Positives = 123/187 (65%), Gaps = 45/187 (24%)
Query: 61 APCEAEAQCAAM---------------------------------------------VKA 75
APCEAEAQCA + VK
Sbjct: 156 APCEAEAQCAELTSEGNLVDGLTNPLLRRGPIPAAARARLPVTHTEVISGPPVGGVPVKG 215
Query: 76 GKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVLEGMELSHEEFIDLCIL 135
GKVYA ATEDMDALTFG+N+LLRH+TFSEARK+PVQEFHL++VL G+EL EFIDLCIL
Sbjct: 216 GKVYAVATEDMDALTFGANVLLRHLTFSEARKMPVQEFHLDQVLRGLELEQTEFIDLCIL 275
Query: 136 LGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGWLYKEARELFRHPEVA 195
LGCDYC SI+GIGPKRAIELIK+HRSIE++L NIDTKKY+ PE W Y+ AR LF+ PEV
Sbjct: 276 LGCDYCGSIKGIGPKRAIELIKQHRSIEQVLHNIDTKKYSPPENWEYENARRLFQQPEVT 335
Query: 196 DPETIEF 202
+ + +E
Sbjct: 336 EAKDVEL 342
Score = 138 bits (348), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 78/126 (61%), Positives = 95/126 (75%), Gaps = 8/126 (6%)
Query: 304 ELVADVAPSSIRES--------RKICIDASMSLYQFLIAVRSEGNQLMSVDGEPTSHLMG 355
+L+AD+AP +++E+ RK+ IDASMSLYQFLIAVRS+G QL SVDGE TSHLMG
Sbjct: 8 KLIADIAPMAVKETEIKIISVGRKVAIDASMSLYQFLIAVRSQGAQLTSVDGETTSHLMG 67
Query: 356 TFYRTIRLVEHGLKPIYVFDGKPPTLKSGELNKRMEKREDAQKALAKAQEQGKLKWSDPD 415
TFYRTIRL+E G+KP+YVFDGKPP +KS +LNKR E+RE+A+K L KA E G D
Sbjct: 68 TFYRTIRLIEDGIKPVYVFDGKPPDMKSHQLNKRAERREEAEKELQKATEAGDTASIDKF 127
Query: 416 EDGLVK 421
LVK
Sbjct: 128 NRRLVK 133
Score = 94.0 bits (232), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 45/78 (57%), Positives = 57/78 (73%), Gaps = 3/78 (3%)
Query: 3 LKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSSTTQGRLDSFFTI---RREEKR 59
LKWSDPDE+GLVK+LCGDK F E+R+RNGAKKL+KAR+ TTQGRLD FF + KR
Sbjct: 342 LKWSDPDEEGLVKFLCGDKQFNEERVRNGAKKLMKARTGTTQGRLDGFFKVLSTTPNPKR 401
Query: 60 KAPCEAEAQCAAMVKAGK 77
KA + ++ + AG+
Sbjct: 402 KAEEDKKSANKKVKTAGR 419
Score = 93.2 bits (230), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 39/51 (76%), Positives = 46/51 (90%)
Query: 409 LKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSTTTQGRLDSFFTI 459
LKWSDPDE+GLVK+LCGDK F E+R+RNGAKKL+KAR+ TTQGRLD FF +
Sbjct: 342 LKWSDPDEEGLVKFLCGDKQFNEERVRNGAKKLMKARTGTTQGRLDGFFKV 392
>gi|26345786|dbj|BAC36544.1| unnamed protein product [Mus musculus]
Length = 411
Score = 212 bits (540), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 94/142 (66%), Positives = 120/142 (84%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVLE 120
AP EAEA CAA+ KAGKVYA ATEDMD LTFGS +L+RH+T SEA+KLP+QEFHL +VL+
Sbjct: 155 APSEAEASCAALAKAGKVYAAATEDMDCLTFGSPVLMRHLTASEAKKLPIQEFHLSRVLQ 214
Query: 121 GMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGW 180
+ L+ E+F+DLCILLG DYC+SIRGIGPKRA++LI++H+SIE+I+ +D KY VPE W
Sbjct: 215 ELGLNQEQFVDLCILLGSDYCESIRGIGPKRAVDLIQKHKSIEEIVRRLDPSKYPVPENW 274
Query: 181 LYKEARELFRHPEVADPETIEF 202
L+KEA++LF PEV DPE++E
Sbjct: 275 LHKEAQQLFLEPEVLDPESVEL 296
Score = 146 bits (368), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 71/111 (63%), Positives = 89/111 (80%), Gaps = 7/111 (6%)
Query: 304 ELVADVAPSSIRES-------RKICIDASMSLYQFLIAVRSEGNQLMSVDGEPTSHLMGT 356
+L+ADVAPS+IRE+ RK+ IDASMS+YQFLIAVR G+ L + +GE TSHLMG
Sbjct: 8 KLIADVAPSAIRENDIKSYFGRKVAIDASMSIYQFLIAVRQGGDVLQNEEGETTSHLMGM 67
Query: 357 FYRTIRLVEHGLKPIYVFDGKPPTLKSGELNKRMEKREDAQKALAKAQEQG 407
FYRTIR++E+G+KP+YVFDGKPP LKSGEL KR E+R +A+K L +AQE G
Sbjct: 68 FYRTIRMMENGIKPVYVFDGKPPQLKSGELAKRSERRAEAEKQLQQAQEAG 118
Score = 116 bits (291), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 48/74 (64%), Positives = 64/74 (86%)
Query: 232 FIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGWLYKEAREL 291
F+DLCILLG DYC+SIRGIGPKRA++LI++H+SIE+I+ +D KY VPE WL+KEA++L
Sbjct: 223 FVDLCILLGSDYCESIRGIGPKRAVDLIQKHKSIEEIVRRLDPSKYPVPENWLHKEAQQL 282
Query: 292 FRHPEIADPETIEL 305
F PE+ DPE++EL
Sbjct: 283 FLEPEVLDPESVEL 296
Score = 76.3 bits (186), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 34/63 (53%), Positives = 47/63 (74%), Gaps = 3/63 (4%)
Query: 3 LKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSSTTQGRLDSFFTIR---REEKR 59
LKWS+P+E+ LVK++CG+K F+E+RIR+G K+L K+R +TQGRLD FF + KR
Sbjct: 296 LKWSEPNEEELVKFMCGEKQFSEERIRSGVKRLSKSRQGSTQGRLDDFFKVTGSLSSAKR 355
Query: 60 KAP 62
K P
Sbjct: 356 KEP 358
Score = 75.5 bits (184), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 31/55 (56%), Positives = 45/55 (81%)
Query: 405 EQGKLKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSTTTQGRLDSFFTI 459
E +LKWS+P+E+ LVK++CG+K F+E+RIR+G K+L K+R +TQGRLD FF +
Sbjct: 292 ESVELKWSEPNEEELVKFMCGEKQFSEERIRSGVKRLSKSRQGSTQGRLDDFFKV 346
>gi|148709395|gb|EDL41341.1| flap structure specific endonuclease 1, isoform CRA_b [Mus
musculus]
Length = 432
Score = 212 bits (540), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 94/142 (66%), Positives = 120/142 (84%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVLE 120
AP EAEA CAA+ KAGKVYA ATEDMD LTFGS +L+RH+T SEA+KLP+QEFHL +VL+
Sbjct: 207 APSEAEASCAALAKAGKVYAAATEDMDCLTFGSPVLMRHLTASEAKKLPIQEFHLSRVLQ 266
Query: 121 GMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGW 180
+ L+ E+F+DLCILLG DYC+SIRGIGPKRA++LI++H+SIE+I+ +D KY VPE W
Sbjct: 267 ELGLNQEQFVDLCILLGSDYCESIRGIGPKRAVDLIQKHKSIEEIVRRLDPSKYPVPENW 326
Query: 181 LYKEARELFRHPEVADPETIEF 202
L+KEA++LF PEV DPE++E
Sbjct: 327 LHKEAQQLFLEPEVLDPESVEL 348
Score = 145 bits (367), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 71/111 (63%), Positives = 89/111 (80%), Gaps = 7/111 (6%)
Query: 304 ELVADVAPSSIRES-------RKICIDASMSLYQFLIAVRSEGNQLMSVDGEPTSHLMGT 356
+L+ADVAPS+IRE+ RK+ IDASMS+YQFLIAVR G+ L + +GE TSHLMG
Sbjct: 60 KLIADVAPSAIRENDIKSYFGRKVAIDASMSIYQFLIAVRQGGDVLQNEEGETTSHLMGM 119
Query: 357 FYRTIRLVEHGLKPIYVFDGKPPTLKSGELNKRMEKREDAQKALAKAQEQG 407
FYRTIR++E+G+KP+YVFDGKPP LKSGEL KR E+R +A+K L +AQE G
Sbjct: 120 FYRTIRMMENGIKPVYVFDGKPPQLKSGELAKRSERRAEAEKQLQQAQEAG 170
Score = 116 bits (291), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 48/74 (64%), Positives = 64/74 (86%)
Query: 232 FIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGWLYKEAREL 291
F+DLCILLG DYC+SIRGIGPKRA++LI++H+SIE+I+ +D KY VPE WL+KEA++L
Sbjct: 275 FVDLCILLGSDYCESIRGIGPKRAVDLIQKHKSIEEIVRRLDPSKYPVPENWLHKEAQQL 334
Query: 292 FRHPEIADPETIEL 305
F PE+ DPE++EL
Sbjct: 335 FLEPEVLDPESVEL 348
Score = 75.9 bits (185), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 34/63 (53%), Positives = 47/63 (74%), Gaps = 3/63 (4%)
Query: 3 LKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSSTTQGRLDSFFTIR---REEKR 59
LKWS+P+E+ LVK++CG+K F+E+RIR+G K+L K+R +TQGRLD FF + KR
Sbjct: 348 LKWSEPNEEELVKFMCGEKQFSEERIRSGVKRLSKSRQGSTQGRLDDFFKVTGSLSSAKR 407
Query: 60 KAP 62
K P
Sbjct: 408 KEP 410
Score = 75.1 bits (183), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 31/55 (56%), Positives = 45/55 (81%)
Query: 405 EQGKLKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSTTTQGRLDSFFTI 459
E +LKWS+P+E+ LVK++CG+K F+E+RIR+G K+L K+R +TQGRLD FF +
Sbjct: 344 ESVELKWSEPNEEELVKFMCGEKQFSEERIRSGVKRLSKSRQGSTQGRLDDFFKV 398
>gi|148709394|gb|EDL41340.1| flap structure specific endonuclease 1, isoform CRA_a [Mus
musculus]
Length = 396
Score = 212 bits (540), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 94/142 (66%), Positives = 120/142 (84%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVLE 120
AP EAEA CAA+ KAGKVYA ATEDMD LTFGS +L+RH+T SEA+KLP+QEFHL +VL+
Sbjct: 171 APSEAEASCAALAKAGKVYAAATEDMDCLTFGSPVLMRHLTASEAKKLPIQEFHLSRVLQ 230
Query: 121 GMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGW 180
+ L+ E+F+DLCILLG DYC+SIRGIGPKRA++LI++H+SIE+I+ +D KY VPE W
Sbjct: 231 ELGLNQEQFVDLCILLGSDYCESIRGIGPKRAVDLIQKHKSIEEIVRRLDPSKYPVPENW 290
Query: 181 LYKEARELFRHPEVADPETIEF 202
L+KEA++LF PEV DPE++E
Sbjct: 291 LHKEAQQLFLEPEVLDPESVEL 312
Score = 146 bits (369), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 71/110 (64%), Positives = 88/110 (80%), Gaps = 7/110 (6%)
Query: 305 LVADVAPSSIRES-------RKICIDASMSLYQFLIAVRSEGNQLMSVDGEPTSHLMGTF 357
L+ADVAPS+IRE+ RK+ IDASMS+YQFLIAVR G+ L + +GE TSHLMG F
Sbjct: 25 LIADVAPSAIRENDIKSYFGRKVAIDASMSIYQFLIAVRQGGDVLQNEEGETTSHLMGMF 84
Query: 358 YRTIRLVEHGLKPIYVFDGKPPTLKSGELNKRMEKREDAQKALAKAQEQG 407
YRTIR++E+G+KP+YVFDGKPP LKSGEL KR E+R +A+K L +AQE G
Sbjct: 85 YRTIRMMENGIKPVYVFDGKPPQLKSGELAKRSERRAEAEKQLQQAQEAG 134
Score = 116 bits (291), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 48/74 (64%), Positives = 64/74 (86%)
Query: 232 FIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGWLYKEAREL 291
F+DLCILLG DYC+SIRGIGPKRA++LI++H+SIE+I+ +D KY VPE WL+KEA++L
Sbjct: 239 FVDLCILLGSDYCESIRGIGPKRAVDLIQKHKSIEEIVRRLDPSKYPVPENWLHKEAQQL 298
Query: 292 FRHPEIADPETIEL 305
F PE+ DPE++EL
Sbjct: 299 FLEPEVLDPESVEL 312
Score = 76.3 bits (186), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 34/63 (53%), Positives = 47/63 (74%), Gaps = 3/63 (4%)
Query: 3 LKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSSTTQGRLDSFFTIR---REEKR 59
LKWS+P+E+ LVK++CG+K F+E+RIR+G K+L K+R +TQGRLD FF + KR
Sbjct: 312 LKWSEPNEEELVKFMCGEKQFSEERIRSGVKRLSKSRQGSTQGRLDDFFKVTGSLSSAKR 371
Query: 60 KAP 62
K P
Sbjct: 372 KEP 374
Score = 75.5 bits (184), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 31/55 (56%), Positives = 45/55 (81%)
Query: 405 EQGKLKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSTTTQGRLDSFFTI 459
E +LKWS+P+E+ LVK++CG+K F+E+RIR+G K+L K+R +TQGRLD FF +
Sbjct: 308 ESVELKWSEPNEEELVKFMCGEKQFSEERIRSGVKRLSKSRQGSTQGRLDDFFKV 362
>gi|387916082|gb|AFK11650.1| Flap endonuclease 1-B [Callorhinchus milii]
Length = 382
Score = 212 bits (539), Expect = 5e-52, Method: Compositional matrix adjust.
Identities = 96/143 (67%), Positives = 117/143 (81%)
Query: 60 KAPCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVL 119
+APCEAEA CAA+VK+GKVY TATEDMD L FG+ ILLR MT SEA+KLP+QEFHL K+L
Sbjct: 154 EAPCEAEASCAALVKSGKVYGTATEDMDGLAFGTTILLRRMTASEAKKLPIQEFHLNKIL 213
Query: 120 EGMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEG 179
+ LS EEFIDLCILLGCDYC++IRGIGPKRAIELI++HR IE++L++ID KYTVP
Sbjct: 214 QETGLSQEEFIDLCILLGCDYCETIRGIGPKRAIELIRQHRCIEEVLKHIDGNKYTVPGD 273
Query: 180 WLYKEARELFRHPEVADPETIEF 202
W Y +AR LF P+V + + +E
Sbjct: 274 WAYSQARSLFLTPDVVNVDDVEL 296
Score = 147 bits (371), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 71/111 (63%), Positives = 86/111 (77%), Gaps = 7/111 (6%)
Query: 304 ELVADVAPSSIRE-------SRKICIDASMSLYQFLIAVRSEGNQLMSVDGEPTSHLMGT 356
+L+AD+AP +IRE RKI IDASMS+YQFLIAVR +G L + GE TSHLMG
Sbjct: 8 KLIADIAPGAIREQELKNYFGRKIAIDASMSIYQFLIAVRHDGQVLQTESGETTSHLMGM 67
Query: 357 FYRTIRLVEHGLKPIYVFDGKPPTLKSGELNKRMEKREDAQKALAKAQEQG 407
FYRTIR+VE G+KP+YVFDGKPP +KSGEL KR E+R +A+K LA+AQE G
Sbjct: 68 FYRTIRMVESGIKPVYVFDGKPPDMKSGELAKRNERRSEAEKQLAQAQEAG 118
Score = 110 bits (276), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 47/74 (63%), Positives = 61/74 (82%)
Query: 232 FIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGWLYKEAREL 291
FIDLCILLGCDYC++IRGIGPKRAIELI++HR IE++L++ID KYTVP W Y +AR L
Sbjct: 223 FIDLCILLGCDYCETIRGIGPKRAIELIRQHRCIEEVLKHIDGNKYTVPGDWAYSQARSL 282
Query: 292 FRHPEIADPETIEL 305
F P++ + + +EL
Sbjct: 283 FLTPDVVNVDDVEL 296
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 37/64 (57%), Positives = 47/64 (73%), Gaps = 3/64 (4%)
Query: 3 LKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSSTTQGRLDSFFTIR---REEKR 59
LKW++P+ED LV +LC DK F+EDRIRNGAKKL+++R +TQGRLD FF + KR
Sbjct: 296 LKWTEPEEDKLVSFLCEDKGFSEDRIRNGAKKLVRSRQGSTQGRLDDFFKVTGSLTSAKR 355
Query: 60 KAPC 63
K P
Sbjct: 356 KEPV 359
Score = 79.7 bits (195), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 33/52 (63%), Positives = 44/52 (84%)
Query: 408 KLKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSTTTQGRLDSFFTI 459
+LKW++P+ED LV +LC DK F+EDRIRNGAKKL+++R +TQGRLD FF +
Sbjct: 295 ELKWTEPEEDKLVSFLCEDKGFSEDRIRNGAKKLVRSRQGSTQGRLDDFFKV 346
>gi|317374875|sp|C3KJE6.1|FEN1_ANOFI RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|229367576|gb|ACQ58768.1| Flap endonuclease 1-A [Anoplopoma fimbria]
Length = 380
Score = 212 bits (539), Expect = 5e-52, Method: Compositional matrix adjust.
Identities = 96/142 (67%), Positives = 119/142 (83%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVLE 120
APCEAEA CAA+VKAGKV+ATATEDMD LTFG+N+LLRH+T SEA+KLP+QE H ++L+
Sbjct: 155 APCEAEATCAALVKAGKVFATATEDMDGLTFGTNVLLRHLTASEAKKLPIQELHYSRILQ 214
Query: 121 GMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGW 180
+ L++E+FIDLCI LGCDYC +I+GIGPKRAI+LIK+H SIE+ILENID+ K+ PE W
Sbjct: 215 DIGLTNEQFIDLCIPLGCDYCGTIKGIGPKRAIDLIKQHGSIEEILENIDSSKHPAPEDW 274
Query: 181 LYKEARELFRHPEVADPETIEF 202
LYKEAR LF EV D T++
Sbjct: 275 LYKEARGLFLKAEVVDCSTVDL 296
Score = 147 bits (372), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 77/125 (61%), Positives = 92/125 (73%), Gaps = 7/125 (5%)
Query: 304 ELVADVAPSSIRE-------SRKICIDASMSLYQFLIAVRSEGNQLMSVDGEPTSHLMGT 356
+L+AD AP +I+E RKI IDASM LYQFLIAVR +GN L + DGE TSHLMG
Sbjct: 8 KLIADQAPGAIKEQDIKNYFGRKIAIDASMCLYQFLIAVRQDGNVLQNEDGETTSHLMGM 67
Query: 357 FYRTIRLVEHGLKPIYVFDGKPPTLKSGELNKRMEKREDAQKALAKAQEQGKLKWSDPDE 416
FYRTIR++EHG+KP+YVFDGKPP LKS EL KR EKR +A+K LA+AQE G+ + D
Sbjct: 68 FYRTIRMLEHGIKPVYVFDGKPPQLKSAELEKRGEKRAEAEKMLAQAQELGEQENIDKFS 127
Query: 417 DGLVK 421
LVK
Sbjct: 128 KRLVK 132
Score = 111 bits (277), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 50/74 (67%), Positives = 60/74 (81%)
Query: 232 FIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGWLYKEAREL 291
FIDLCI LGCDYC +I+GIGPKRAI+LIK+H SIE+ILENID+ K+ PE WLYKEAR L
Sbjct: 223 FIDLCIPLGCDYCGTIKGIGPKRAIDLIKQHGSIEEILENIDSSKHPAPEDWLYKEARGL 282
Query: 292 FRHPEIADPETIEL 305
F E+ D T++L
Sbjct: 283 FLKAEVVDCSTVDL 296
Score = 84.3 bits (207), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 37/62 (59%), Positives = 50/62 (80%), Gaps = 2/62 (3%)
Query: 3 LKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSSTTQGRLDSFFTIRR--EEKRK 60
LKWS+PDE+GL++++C +K F+EDR+RNG KK+LK+R +TQGRLDSFF+I KRK
Sbjct: 296 LKWSEPDEEGLIQFMCNEKQFSEDRMRNGCKKILKSRQGSTQGRLDSFFSITGSLSSKRK 355
Query: 61 AP 62
P
Sbjct: 356 EP 357
Score = 82.4 bits (202), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 33/51 (64%), Positives = 46/51 (90%)
Query: 409 LKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSTTTQGRLDSFFTI 459
LKWS+PDE+GL++++C +K F+EDR+RNG KK+LK+R +TQGRLDSFF+I
Sbjct: 296 LKWSEPDEEGLIQFMCNEKQFSEDRMRNGCKKILKSRQGSTQGRLDSFFSI 346
>gi|260798636|ref|XP_002594306.1| hypothetical protein BRAFLDRAFT_275596 [Branchiostoma floridae]
gi|317374877|sp|C3ZBT0.1|FEN1_BRAFL RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|229279539|gb|EEN50317.1| hypothetical protein BRAFLDRAFT_275596 [Branchiostoma floridae]
Length = 380
Score = 212 bits (539), Expect = 5e-52, Method: Compositional matrix adjust.
Identities = 92/142 (64%), Positives = 122/142 (85%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVLE 120
APCEAEAQCA + K GKVYA TEDMD LTFG+NI+LRH+TFSEARK+P++E++ +++L
Sbjct: 155 APCEAEAQCAELAKKGKVYAAGTEDMDVLTFGTNIMLRHLTFSEARKMPIKEYYYDRLLA 214
Query: 121 GMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGW 180
++L+ ++FIDLCILLGCDYCDSIRGIGPKRAIELI++++SIE+IL++IDTKK+ VPE W
Sbjct: 215 ELDLTQDQFIDLCILLGCDYCDSIRGIGPKRAIELIRQYKSIEEILKHIDTKKFPVPEDW 274
Query: 181 LYKEARELFRHPEVADPETIEF 202
Y +AR+LF+ PEV + +E
Sbjct: 275 PYDQARKLFKEPEVTPADQVEL 296
Score = 137 bits (344), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 63/102 (61%), Positives = 81/102 (79%), Gaps = 7/102 (6%)
Query: 304 ELVADVAPSSIRES-------RKICIDASMSLYQFLIAVRSEGNQLMSVDGEPTSHLMGT 356
+L+ D AP +++E+ RK+ IDASMS+YQFLIAVR +GN L + GE TSHLMG
Sbjct: 8 KLIGDHAPGAMKENEIKNYFGRKVAIDASMSIYQFLIAVRQDGNMLTNDAGEATSHLMGM 67
Query: 357 FYRTIRLVEHGLKPIYVFDGKPPTLKSGELNKRMEKREDAQK 398
FYRTIR+V++G+KP+YVFDGKPP +KSGEL KR E+RE+AQK
Sbjct: 68 FYRTIRMVDNGIKPVYVFDGKPPNMKSGELAKRAERREEAQK 109
Score = 118 bits (295), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 51/74 (68%), Positives = 65/74 (87%)
Query: 232 FIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGWLYKEAREL 291
FIDLCILLGCDYCDSIRGIGPKRAIELI++++SIE+IL++IDTKK+ VPE W Y +AR+L
Sbjct: 223 FIDLCILLGCDYCDSIRGIGPKRAIELIRQYKSIEEILKHIDTKKFPVPEDWPYDQARKL 282
Query: 292 FRHPEIADPETIEL 305
F+ PE+ + +EL
Sbjct: 283 FKEPEVTPADQVEL 296
Score = 83.2 bits (204), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 36/55 (65%), Positives = 46/55 (83%)
Query: 405 EQGKLKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSTTTQGRLDSFFTI 459
+Q +LKW DPDE+GLV+Y+ +K F+EDRI+NGAKKL AR T+TQGRLDSFF +
Sbjct: 292 DQVELKWVDPDEEGLVQYMSNEKGFSEDRIKNGAKKLKNARHTSTQGRLDSFFKV 346
Score = 83.2 bits (204), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 42/80 (52%), Positives = 53/80 (66%), Gaps = 5/80 (6%)
Query: 3 LKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSSTTQGRLDSFFTIRREE--KRK 60
LKW DPDE+GLV+Y+ +K F+EDRI+NGAKKL AR ++TQGRLDSFF + KRK
Sbjct: 296 LKWVDPDEEGLVQYMSNEKGFSEDRIKNGAKKLKNARHTSTQGRLDSFFKVMSSPSVKRK 355
Query: 61 AP---CEAEAQCAAMVKAGK 77
P + A A + GK
Sbjct: 356 EPPKGAKGSASKKAKMSGGK 375
>gi|403255047|ref|XP_003920260.1| PREDICTED: flap endonuclease 1 isoform 1 [Saimiri boliviensis
boliviensis]
gi|403255049|ref|XP_003920261.1| PREDICTED: flap endonuclease 1 isoform 2 [Saimiri boliviensis
boliviensis]
Length = 380
Score = 211 bits (536), Expect = 9e-52, Method: Compositional matrix adjust.
Identities = 92/142 (64%), Positives = 120/142 (84%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVLE 120
AP EAEA CAA+VKAGKVYA ATEDMD LTFGS +L+RH+T SE++KLP+QEFHL ++L+
Sbjct: 155 APSEAEASCAALVKAGKVYAAATEDMDCLTFGSPVLMRHLTASESKKLPIQEFHLSRILQ 214
Query: 121 GMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGW 180
+ L+ E+F+DLCILLG DYC+SIRGIGPKRA++LI++H+SIE+I+ +D KY VPE W
Sbjct: 215 ELGLNQEQFVDLCILLGSDYCESIRGIGPKRAVDLIQKHKSIEEIVRRLDPTKYPVPENW 274
Query: 181 LYKEARELFRHPEVADPETIEF 202
L++EA +LF PEV DPE++E
Sbjct: 275 LHREAHQLFLEPEVLDPESVEL 296
Score = 134 bits (338), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 64/99 (64%), Positives = 80/99 (80%), Gaps = 7/99 (7%)
Query: 304 ELVADVAPSSIRES-------RKICIDASMSLYQFLIAVRSEGNQLMSVDGEPTSHLMGT 356
+L+ADVAPS+IRE+ RK+ IDASMS+YQFLIAVR G+ L + +GE TSHLMG
Sbjct: 8 KLIADVAPSAIRENDIKSYFGRKVAIDASMSIYQFLIAVRQGGDVLQNEEGETTSHLMGM 67
Query: 357 FYRTIRLVEHGLKPIYVFDGKPPTLKSGELNKRMEKRED 395
FYRTIR++E+G+KP+YVFDGKPP LKSGEL KR E+R +
Sbjct: 68 FYRTIRMMENGIKPVYVFDGKPPQLKSGELAKRSERRAE 106
Score = 115 bits (287), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 47/74 (63%), Positives = 63/74 (85%)
Query: 232 FIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGWLYKEAREL 291
F+DLCILLG DYC+SIRGIGPKRA++LI++H+SIE+I+ +D KY VPE WL++EA +L
Sbjct: 223 FVDLCILLGSDYCESIRGIGPKRAVDLIQKHKSIEEIVRRLDPTKYPVPENWLHREAHQL 282
Query: 292 FRHPEIADPETIEL 305
F PE+ DPE++EL
Sbjct: 283 FLEPEVLDPESVEL 296
Score = 77.8 bits (190), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 38/84 (45%), Positives = 57/84 (67%), Gaps = 11/84 (13%)
Query: 3 LKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSSTTQGRLDSFFTI--------R 54
LKWS+P+E+ LVK++CG+K F+E+RIR+G K+L K+R +TQGRLD FF + R
Sbjct: 296 LKWSEPNEEELVKFMCGEKQFSEERIRSGVKRLSKSRQGSTQGRLDDFFKVTGSLSSAKR 355
Query: 55 REEKRKAPCEAEAQCAAMVKAGKV 78
+E + K + +A+ A AGK+
Sbjct: 356 KEPEPKGSTKKKAKTGA---AGKI 376
Score = 75.1 bits (183), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 31/55 (56%), Positives = 45/55 (81%)
Query: 405 EQGKLKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSTTTQGRLDSFFTI 459
E +LKWS+P+E+ LVK++CG+K F+E+RIR+G K+L K+R +TQGRLD FF +
Sbjct: 292 ESVELKWSEPNEEELVKFMCGEKQFSEERIRSGVKRLSKSRQGSTQGRLDDFFKV 346
>gi|729476|sp|P39749.1|FEN1_MOUSE RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|499649|gb|AAC37664.1| endonuclease-1 [Mus musculus]
Length = 378
Score = 210 bits (534), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 93/142 (65%), Positives = 119/142 (83%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVLE 120
AP EAEA CAA+ KAGKVYA ATEDMD LTFGS +L+RH+T SEA+KLP+QEFHL +VL+
Sbjct: 153 APSEAEASCAALAKAGKVYAAATEDMDCLTFGSPVLMRHLTASEAKKLPIQEFHLSRVLQ 212
Query: 121 GMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGW 180
+ L+ E+F+DLCILLG DYC+SIRGIG KRA++LI++H+SIE+I+ +D KY VPE W
Sbjct: 213 ELGLNQEQFVDLCILLGSDYCESIRGIGAKRAVDLIQKHKSIEEIVRRLDPSKYPVPENW 272
Query: 181 LYKEARELFRHPEVADPETIEF 202
L+KEA++LF PEV DPE++E
Sbjct: 273 LHKEAQQLFLEPEVVDPESVEL 294
Score = 134 bits (336), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 70/110 (63%), Positives = 86/110 (78%), Gaps = 9/110 (8%)
Query: 305 LVADVAPSSIRES-------RKICIDASMSLYQFLIAVRSEGNQLMSVDGEPTSHLMGTF 357
L+ADVAPS+IRE+ RK+ IDASMS+YQFLIAVR G+ L + +GE TS LMG F
Sbjct: 9 LIADVAPSAIRENDIKSYFGRKVAIDASMSIYQFLIAVRQGGDVLQNEEGETTS-LMGMF 67
Query: 358 YRTIRLVEHGLKPIYVFDGKPPTLKSGELNKRMEKREDAQKALAKAQEQG 407
YRTIR+ E+G+KP+YVFDGKPP LKSGEL KR E+R +A+K L +AQE G
Sbjct: 68 YRTIRM-ENGIKPVYVFDGKPPQLKSGELAKRSERRAEAEKQLQQAQEAG 116
Score = 114 bits (284), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 47/74 (63%), Positives = 63/74 (85%)
Query: 232 FIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGWLYKEAREL 291
F+DLCILLG DYC+SIRGIG KRA++LI++H+SIE+I+ +D KY VPE WL+KEA++L
Sbjct: 221 FVDLCILLGSDYCESIRGIGAKRAVDLIQKHKSIEEIVRRLDPSKYPVPENWLHKEAQQL 280
Query: 292 FRHPEIADPETIEL 305
F PE+ DPE++EL
Sbjct: 281 FLEPEVVDPESVEL 294
Score = 76.3 bits (186), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 34/63 (53%), Positives = 47/63 (74%), Gaps = 3/63 (4%)
Query: 3 LKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSSTTQGRLDSFFTIR---REEKR 59
LKWS+P+E+ LVK++CG+K F+E+RIR+G K+L K+R +TQGRLD FF + KR
Sbjct: 294 LKWSEPNEEELVKFMCGEKQFSEERIRSGVKRLSKSRQGSTQGRLDDFFKVTGSLSSAKR 353
Query: 60 KAP 62
K P
Sbjct: 354 KEP 356
Score = 75.5 bits (184), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 31/55 (56%), Positives = 45/55 (81%)
Query: 405 EQGKLKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSTTTQGRLDSFFTI 459
E +LKWS+P+E+ LVK++CG+K F+E+RIR+G K+L K+R +TQGRLD FF +
Sbjct: 290 ESVELKWSEPNEEELVKFMCGEKQFSEERIRSGVKRLSKSRQGSTQGRLDDFFKV 344
>gi|126344550|ref|XP_001362314.1| PREDICTED: flap endonuclease 1-like [Monodelphis domestica]
Length = 380
Score = 209 bits (533), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 94/143 (65%), Positives = 119/143 (83%)
Query: 60 KAPCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVL 119
+AP EAEA CAA+ KAGKVYA ATEDMD LTFGS +L+RH+T SEA+KLP+QEFHL +VL
Sbjct: 154 EAPGEAEASCAALAKAGKVYAAATEDMDCLTFGSPVLMRHLTASEAKKLPIQEFHLSRVL 213
Query: 120 EGMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEG 179
+G+ L+ E+F+DLCILLG DYC+SIRGIGPKRAI+LI++H+SIE+I+ +D KY VPE
Sbjct: 214 QGLGLTQEQFVDLCILLGSDYCESIRGIGPKRAIDLIQQHKSIEEIIRKLDPSKYPVPEN 273
Query: 180 WLYKEARELFRHPEVADPETIEF 202
WL+KEA+ LF P+V D T+E
Sbjct: 274 WLHKEAQHLFLEPDVLDVNTVEL 296
Score = 142 bits (359), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 72/125 (57%), Positives = 94/125 (75%), Gaps = 7/125 (5%)
Query: 304 ELVADVAPSSIRES-------RKICIDASMSLYQFLIAVRSEGNQLMSVDGEPTSHLMGT 356
+L+ADVAPS+IRE+ RK+ IDASMS+YQFLIAVR G+ L + +GE TSHL+G
Sbjct: 8 KLIADVAPSAIRENDIKSYFGRKVAIDASMSIYQFLIAVRHGGDMLQNEEGEATSHLVGM 67
Query: 357 FYRTIRLVEHGLKPIYVFDGKPPTLKSGELNKRMEKREDAQKALAKAQEQGKLKWSDPDE 416
FYRTIR+VE+G+KP+YVFDGKPP LKSGEL KR E+R +A++ L +A + G + +D
Sbjct: 68 FYRTIRMVENGIKPVYVFDGKPPQLKSGELAKRGERRAEAERQLQQALDAGAQEEADKFS 127
Query: 417 DGLVK 421
LVK
Sbjct: 128 KRLVK 132
Score = 110 bits (276), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 47/74 (63%), Positives = 61/74 (82%)
Query: 232 FIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGWLYKEAREL 291
F+DLCILLG DYC+SIRGIGPKRAI+LI++H+SIE+I+ +D KY VPE WL+KEA+ L
Sbjct: 223 FVDLCILLGSDYCESIRGIGPKRAIDLIQQHKSIEEIIRKLDPSKYPVPENWLHKEAQHL 282
Query: 292 FRHPEIADPETIEL 305
F P++ D T+EL
Sbjct: 283 FLEPDVLDVNTVEL 296
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 34/65 (52%), Positives = 47/65 (72%), Gaps = 3/65 (4%)
Query: 1 MTLKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSSTTQGRLDSFFTIR---REE 57
+ LKW +PDE+GLV+++CG+K F EDR+RNG ++L K+R +TQGRLD FF +
Sbjct: 294 VELKWGEPDEEGLVQFMCGEKQFNEDRVRNGVRRLSKSRQGSTQGRLDDFFKVTGCLTSA 353
Query: 58 KRKAP 62
KRK P
Sbjct: 354 KRKGP 358
Score = 78.2 bits (191), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 30/52 (57%), Positives = 43/52 (82%)
Query: 408 KLKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSTTTQGRLDSFFTI 459
+LKW +PDE+GLV+++CG+K F EDR+RNG ++L K+R +TQGRLD FF +
Sbjct: 295 ELKWGEPDEEGLVQFMCGEKQFNEDRVRNGVRRLSKSRQGSTQGRLDDFFKV 346
>gi|74219985|dbj|BAE40572.1| unnamed protein product [Mus musculus]
Length = 380
Score = 209 bits (533), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 93/142 (65%), Positives = 119/142 (83%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVLE 120
AP EAEA CAA+ KAGKVYA ATE MD LTFGS +L+RH+T SEA+KLP+QEFHL +VL+
Sbjct: 155 APSEAEASCAALAKAGKVYAAATEGMDCLTFGSPVLMRHLTASEAKKLPIQEFHLSRVLQ 214
Query: 121 GMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGW 180
+ L+ E+F+DLCILLG DYC+SIRGIGPKRA++LI++H+SIE+I+ +D KY VPE W
Sbjct: 215 ELGLNQEQFVDLCILLGSDYCESIRGIGPKRAVDLIQKHKSIEEIVRRLDPSKYPVPENW 274
Query: 181 LYKEARELFRHPEVADPETIEF 202
L+KEA++LF PEV DPE++E
Sbjct: 275 LHKEAQQLFLEPEVLDPESVEL 296
Score = 146 bits (369), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 71/110 (64%), Positives = 88/110 (80%), Gaps = 7/110 (6%)
Query: 305 LVADVAPSSIRES-------RKICIDASMSLYQFLIAVRSEGNQLMSVDGEPTSHLMGTF 357
L+ADVAPS+IRE+ RK+ IDASMS+YQFLIAVR G+ L + +GE TSHLMG F
Sbjct: 9 LIADVAPSAIRENDIKSYFGRKVAIDASMSIYQFLIAVRQGGDVLQNEEGETTSHLMGMF 68
Query: 358 YRTIRLVEHGLKPIYVFDGKPPTLKSGELNKRMEKREDAQKALAKAQEQG 407
YRTIR++E+G+KP+YVFDGKPP LKSGEL KR E+R +A+K L +AQE G
Sbjct: 69 YRTIRMMENGIKPVYVFDGKPPQLKSGELAKRSERRAEAEKQLQQAQEAG 118
Score = 116 bits (291), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 48/74 (64%), Positives = 64/74 (86%)
Query: 232 FIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGWLYKEAREL 291
F+DLCILLG DYC+SIRGIGPKRA++LI++H+SIE+I+ +D KY VPE WL+KEA++L
Sbjct: 223 FVDLCILLGSDYCESIRGIGPKRAVDLIQKHKSIEEIVRRLDPSKYPVPENWLHKEAQQL 282
Query: 292 FRHPEIADPETIEL 305
F PE+ DPE++EL
Sbjct: 283 FLEPEVLDPESVEL 296
Score = 76.3 bits (186), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 34/63 (53%), Positives = 47/63 (74%), Gaps = 3/63 (4%)
Query: 3 LKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSSTTQGRLDSFFTIR---REEKR 59
LKWS+P+E+ LVK++CG+K F+E+RIR+G K+L K+R +TQGRLD FF + KR
Sbjct: 296 LKWSEPNEEELVKFMCGEKQFSEERIRSGVKRLSKSRQGSTQGRLDDFFKVTGSLSSAKR 355
Query: 60 KAP 62
K P
Sbjct: 356 KEP 358
Score = 75.5 bits (184), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 31/55 (56%), Positives = 45/55 (81%)
Query: 405 EQGKLKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSTTTQGRLDSFFTI 459
E +LKWS+P+E+ LVK++CG+K F+E+RIR+G K+L K+R +TQGRLD FF +
Sbjct: 292 ESVELKWSEPNEEELVKFMCGEKQFSEERIRSGVKRLSKSRQGSTQGRLDDFFKV 346
>gi|330689555|pdb|3Q8M|A Chain A, Crystal Structure Of Human Flap Endonuclease Fen1 (D181a)
In Complex With Substrate 5'-Flap Dna And K+
gi|330689556|pdb|3Q8M|B Chain B, Crystal Structure Of Human Flap Endonuclease Fen1 (D181a)
In Complex With Substrate 5'-Flap Dna And K+
Length = 341
Score = 209 bits (533), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 93/142 (65%), Positives = 119/142 (83%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVLE 120
AP EAEA CAA+VKAGKVYA ATEDM LTFGS +L+RH+T SEA+KLP+QEFHL ++L+
Sbjct: 154 APSEAEASCAALVKAGKVYAAATEDMACLTFGSPVLMRHLTASEAKKLPIQEFHLSRILQ 213
Query: 121 GMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGW 180
+ L+ E+F+DLCILLG DYC+SIRGIGPKRA++LI++H+SIE+I+ +D KY VPE W
Sbjct: 214 ELGLNQEQFVDLCILLGSDYCESIRGIGPKRAVDLIQKHKSIEEIVRRLDPNKYPVPENW 273
Query: 181 LYKEARELFRHPEVADPETIEF 202
L+KEA +LF PEV DPE++E
Sbjct: 274 LHKEAHQLFLEPEVLDPESVEL 295
Score = 134 bits (337), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 64/99 (64%), Positives = 80/99 (80%), Gaps = 7/99 (7%)
Query: 304 ELVADVAPSSIRES-------RKICIDASMSLYQFLIAVRSEGNQLMSVDGEPTSHLMGT 356
+L+ADVAPS+IRE+ RK+ IDASMS+YQFLIAVR G+ L + +GE TSHLMG
Sbjct: 7 KLIADVAPSAIRENDIKSYFGRKVAIDASMSIYQFLIAVRQGGDVLQNEEGETTSHLMGM 66
Query: 357 FYRTIRLVEHGLKPIYVFDGKPPTLKSGELNKRMEKRED 395
FYRTIR++E+G+KP+YVFDGKPP LKSGEL KR E+R +
Sbjct: 67 FYRTIRMMENGIKPVYVFDGKPPQLKSGELAKRSERRAE 105
Score = 115 bits (289), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 48/74 (64%), Positives = 63/74 (85%)
Query: 232 FIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGWLYKEAREL 291
F+DLCILLG DYC+SIRGIGPKRA++LI++H+SIE+I+ +D KY VPE WL+KEA +L
Sbjct: 222 FVDLCILLGSDYCESIRGIGPKRAVDLIQKHKSIEEIVRRLDPNKYPVPENWLHKEAHQL 281
Query: 292 FRHPEIADPETIEL 305
F PE+ DPE++EL
Sbjct: 282 FLEPEVLDPESVEL 295
Score = 58.5 bits (140), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 23/45 (51%), Positives = 37/45 (82%)
Query: 405 EQGKLKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSTTT 449
E +LKWS+P+E+ L+K++CG+K F+E+RIR+G K+L K+R +T
Sbjct: 291 ESVELKWSEPNEEELIKFMCGEKQFSEERIRSGVKRLSKSRQGST 335
Score = 58.5 bits (140), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 22/41 (53%), Positives = 35/41 (85%)
Query: 3 LKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSSTT 43
LKWS+P+E+ L+K++CG+K F+E+RIR+G K+L K+R +T
Sbjct: 295 LKWSEPNEEELIKFMCGEKQFSEERIRSGVKRLSKSRQGST 335
>gi|13506617|gb|AAK01853.1| flap endonuclease-1 [Mus musculus]
Length = 378
Score = 209 bits (533), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 93/142 (65%), Positives = 119/142 (83%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVLE 120
AP EAEA CAA+ KAGKVYA ATEDMD LTFGS +L+RH+T SEA+KLP+QEFHL +VL+
Sbjct: 153 APSEAEASCAALAKAGKVYAAATEDMDCLTFGSPVLMRHLTASEAKKLPIQEFHLSRVLQ 212
Query: 121 GMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGW 180
+ L+ E+F+DLCILLG DYC+SIRGIG KRA++LI++H+SIE+I+ +D KY VPE W
Sbjct: 213 ELGLNQEQFVDLCILLGSDYCESIRGIGAKRAVDLIQKHKSIEEIVRRLDPSKYPVPENW 272
Query: 181 LYKEARELFRHPEVADPETIEF 202
L+KEA++LF PEV DPE++E
Sbjct: 273 LHKEAQQLFLEPEVVDPESVEL 294
Score = 134 bits (336), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 70/110 (63%), Positives = 86/110 (78%), Gaps = 9/110 (8%)
Query: 305 LVADVAPSSIRES-------RKICIDASMSLYQFLIAVRSEGNQLMSVDGEPTSHLMGTF 357
L+ADVAPS+IRE+ RK+ IDASMS+YQFLIAVR G+ L + +GE TS LMG F
Sbjct: 9 LIADVAPSAIRENDIKSYFGRKVAIDASMSIYQFLIAVRQGGDVLQNEEGETTS-LMGMF 67
Query: 358 YRTIRLVEHGLKPIYVFDGKPPTLKSGELNKRMEKREDAQKALAKAQEQG 407
YRTIR+ E+G+KP+YVFDGKPP LKSGEL KR E+R +A+K L +AQE G
Sbjct: 68 YRTIRM-ENGIKPVYVFDGKPPQLKSGELAKRSERRAEAEKQLQQAQEAG 116
Score = 114 bits (284), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 47/74 (63%), Positives = 63/74 (85%)
Query: 232 FIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGWLYKEAREL 291
F+DLCILLG DYC+SIRGIG KRA++LI++H+SIE+I+ +D KY VPE WL+KEA++L
Sbjct: 221 FVDLCILLGSDYCESIRGIGAKRAVDLIQKHKSIEEIVRRLDPSKYPVPENWLHKEAQQL 280
Query: 292 FRHPEIADPETIEL 305
F PE+ DPE++EL
Sbjct: 281 FLEPEVVDPESVEL 294
Score = 76.6 bits (187), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 34/63 (53%), Positives = 47/63 (74%), Gaps = 3/63 (4%)
Query: 3 LKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSSTTQGRLDSFFTIR---REEKR 59
LKWS+P+E+ LVK++CG+K F+E+RIR+G K+L K+R +TQGRLD FF + KR
Sbjct: 294 LKWSEPNEEELVKFMCGEKQFSEERIRSGVKRLSKSRQGSTQGRLDDFFNVTGSLSSAKR 353
Query: 60 KAP 62
K P
Sbjct: 354 KEP 356
Score = 75.9 bits (185), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 31/55 (56%), Positives = 45/55 (81%)
Query: 405 EQGKLKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSTTTQGRLDSFFTI 459
E +LKWS+P+E+ LVK++CG+K F+E+RIR+G K+L K+R +TQGRLD FF +
Sbjct: 290 ESVELKWSEPNEEELVKFMCGEKQFSEERIRSGVKRLSKSRQGSTQGRLDDFFNV 344
>gi|17510005|ref|NP_491168.1| Protein CRN-1 [Caenorhabditis elegans]
gi|75023012|sp|Q9N3T2.1|FEN1_CAEEL RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Cell
death-related nuclease 1; AltName: Full=Flap
structure-specific endonuclease 1
gi|31747251|gb|AAP57297.1| cell death-related nuclease 1 [Caenorhabditis elegans]
gi|373220153|emb|CCD72553.1| Protein CRN-1 [Caenorhabditis elegans]
Length = 382
Score = 209 bits (531), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 95/142 (66%), Positives = 114/142 (80%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVLE 120
APCEAEAQCA +VKAGKV+ T TEDMDALTFGS +LLRH A+K+P++EF+L LE
Sbjct: 155 APCEAEAQCAHLVKAGKVFGTVTEDMDALTFGSTVLLRHFLAPVAKKIPIKEFNLSLALE 214
Query: 121 GMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGW 180
M+LS EEFIDLCILLGCDYC +IRG+GPK+A+ELI++H++IE ILENID KY PE W
Sbjct: 215 EMKLSVEEFIDLCILLGCDYCGTIRGVGPKKAVELIRQHKNIETILENIDQNKYPPPEDW 274
Query: 181 LYKEARELFRHPEVADPETIEF 202
YK ARELF +PEV PE +E
Sbjct: 275 PYKRARELFLNPEVTKPEEVEL 296
Score = 139 bits (351), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 69/125 (55%), Positives = 93/125 (74%), Gaps = 7/125 (5%)
Query: 304 ELVADVAPSSIRES-------RKICIDASMSLYQFLIAVRSEGNQLMSVDGEPTSHLMGT 356
+++AD APS+I+ + R + IDASM LYQFLIAVR +G+QL S DGE TSHLMG
Sbjct: 8 QVIADNAPSAIKVNEMKAFFGRTVAIDASMCLYQFLIAVRQDGSQLQSEDGETTSHLMGM 67
Query: 357 FYRTIRLVEHGLKPIYVFDGKPPTLKSGELNKRMEKREDAQKALAKAQEQGKLKWSDPDE 416
RT+R+ E+G+KP+YVFDGKPP +K GEL KR E+R +A+KAL +A+E+G +K ++ E
Sbjct: 68 LNRTVRMFENGVKPVYVFDGKPPDMKGGELEKRSERRAEAEKALTEAKEKGDVKEAEKFE 127
Query: 417 DGLVK 421
LVK
Sbjct: 128 RRLVK 132
Score = 118 bits (296), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 53/81 (65%), Positives = 64/81 (79%), Gaps = 3/81 (3%)
Query: 232 FIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGWLYKEAREL 291
FIDLCILLGCDYC +IRG+GPK+A+ELI++H++IE ILENID KY PE W YK AREL
Sbjct: 223 FIDLCILLGCDYCGTIRGVGPKKAVELIRQHKNIETILENIDQNKYPPPEDWPYKRAREL 282
Query: 292 FRHPEIADPETIELV---ADV 309
F +PE+ PE +EL ADV
Sbjct: 283 FLNPEVTKPEEVELTWKEADV 303
Score = 66.2 bits (160), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 27/49 (55%), Positives = 37/49 (75%)
Query: 3 LKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSSTTQGRLDSFF 51
L W + D +G++++LCG+KNF E+RIRN KL +R S TQGR+DSFF
Sbjct: 296 LTWKEADVEGVIQFLCGEKNFNEERIRNALAKLKTSRKSGTQGRIDSFF 344
Score = 66.2 bits (160), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 27/53 (50%), Positives = 40/53 (75%)
Query: 405 EQGKLKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSTTTQGRLDSFF 457
E+ +L W + D +G++++LCG+KNF E+RIRN KL +R + TQGR+DSFF
Sbjct: 292 EEVELTWKEADVEGVIQFLCGEKNFNEERIRNALAKLKTSRKSGTQGRIDSFF 344
>gi|308504826|ref|XP_003114596.1| CRE-CRN-1 protein [Caenorhabditis remanei]
gi|308258778|gb|EFP02731.1| CRE-CRN-1 protein [Caenorhabditis remanei]
Length = 382
Score = 208 bits (530), Expect = 5e-51, Method: Compositional matrix adjust.
Identities = 95/143 (66%), Positives = 117/143 (81%)
Query: 60 KAPCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVL 119
+APCEAEAQCA +VKAGKV+ TATEDMDALTFGS +LLRH+ E++K+P++EFHL ++L
Sbjct: 154 EAPCEAEAQCAHLVKAGKVFGTATEDMDALTFGSCVLLRHLLAPESKKIPIKEFHLARIL 213
Query: 120 EGMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEG 179
E M+L+ EEFIDLCILLGCDYC +IRG+GPKRA+ELI ++++IE ILENID KY PE
Sbjct: 214 EEMKLTEEEFIDLCILLGCDYCGTIRGVGPKRAVELINQYKNIETILENIDLTKYPPPED 273
Query: 180 WLYKEARELFRHPEVADPETIEF 202
W YK ARELF P+V E IE
Sbjct: 274 WPYKRARELFLQPDVTKGEEIEL 296
Score = 148 bits (374), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 74/125 (59%), Positives = 96/125 (76%), Gaps = 7/125 (5%)
Query: 304 ELVADVAPSSIRES-------RKICIDASMSLYQFLIAVRSEGNQLMSVDGEPTSHLMGT 356
+++AD APS+I+ S RK+ IDASM LYQFLIAVR +G QL S DGE TSHLMG
Sbjct: 8 QVIADNAPSAIKISEIKAFFGRKVAIDASMCLYQFLIAVRQDGAQLQSEDGETTSHLMGM 67
Query: 357 FYRTIRLVEHGLKPIYVFDGKPPTLKSGELNKRMEKREDAQKALAKAQEQGKLKWSDPDE 416
FYRTIR++++G+KP+YVFDGKPP +KSGEL KR E+R +A+KAL +A+E+G K ++ E
Sbjct: 68 FYRTIRMIDNGIKPVYVFDGKPPDMKSGELEKRSERRAEAEKALTEAKEKGDAKEAEKFE 127
Query: 417 DGLVK 421
LVK
Sbjct: 128 RRLVK 132
Score = 110 bits (275), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 49/75 (65%), Positives = 58/75 (77%)
Query: 232 FIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGWLYKEAREL 291
FIDLCILLGCDYC +IRG+GPKRA+ELI ++++IE ILENID KY PE W YK AREL
Sbjct: 223 FIDLCILLGCDYCGTIRGVGPKRAVELINQYKNIETILENIDLTKYPPPEDWPYKRAREL 282
Query: 292 FRHPEIADPETIELV 306
F P++ E IEL
Sbjct: 283 FLQPDVTKGEEIELT 297
Score = 76.3 bits (186), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 34/72 (47%), Positives = 52/72 (72%), Gaps = 6/72 (8%)
Query: 1 MTLKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSSTTQGRLDSFFTIRRE---- 56
+ L W +PD +G+V+++CGDKNF+E+RIR+ ++ K+R++ TQGR+DSFFT+ +
Sbjct: 294 IELTWKEPDVEGIVRFMCGDKNFSEERIRSALTRMQKSRNAGTQGRIDSFFTVSSQVKCV 353
Query: 57 --EKRKAPCEAE 66
KRKA EAE
Sbjct: 354 TAAKRKAQEEAE 365
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 53/74 (71%)
Query: 405 EQGKLKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSTTTQGRLDSFFTIRREEK 464
E+ +L W +PD +G+V+++CGDKNF+E+RIR+ ++ K+R+ TQGR+DSFFT+ + K
Sbjct: 292 EEIELTWKEPDVEGIVRFMCGDKNFSEERIRSALTRMQKSRNAGTQGRIDSFFTVSSQVK 351
Query: 465 RKSRCQYQCQYQCQ 478
+ + + Q + +
Sbjct: 352 CVTAAKRKAQEEAE 365
>gi|268564494|ref|XP_002639126.1| C. briggsae CBR-CRN-1 protein [Caenorhabditis briggsae]
gi|317374879|sp|A8XL25.1|FEN1_CAEBR RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Cell
death-related nuclease 1; AltName: Full=Flap
structure-specific endonuclease 1
Length = 382
Score = 208 bits (529), Expect = 6e-51, Method: Compositional matrix adjust.
Identities = 95/143 (66%), Positives = 117/143 (81%)
Query: 60 KAPCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVL 119
+APCEAEAQCA +VKAGKVY TATEDMDALTFGS +LLRH+ EA+K+P++EFHL +VL
Sbjct: 154 EAPCEAEAQCANLVKAGKVYGTATEDMDALTFGSCVLLRHLLAPEAKKIPIKEFHLARVL 213
Query: 120 EGMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEG 179
E M+L+ ++FIDLCILLGCDYC +IRGIGPK+A+ELIK+H++IE +LENID KY P
Sbjct: 214 EEMQLTKDQFIDLCILLGCDYCGTIRGIGPKKAVELIKQHKNIETVLENIDQTKYPPPAD 273
Query: 180 WLYKEARELFRHPEVADPETIEF 202
W YK ARELF PEV + +E
Sbjct: 274 WPYKRARELFHEPEVMKCDEVEL 296
Score = 147 bits (370), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 71/125 (56%), Positives = 96/125 (76%), Gaps = 7/125 (5%)
Query: 304 ELVADVAPSSIRE-------SRKICIDASMSLYQFLIAVRSEGNQLMSVDGEPTSHLMGT 356
+++AD APS+I+ RK+ IDASM LYQFLIA+R +G+Q+ S DGE TSHLMG
Sbjct: 8 QVIADHAPSAIKVQEIKAFFGRKVAIDASMCLYQFLIAIRQDGSQMQSEDGETTSHLMGM 67
Query: 357 FYRTIRLVEHGLKPIYVFDGKPPTLKSGELNKRMEKREDAQKALAKAQEQGKLKWSDPDE 416
FYRTIR++++G+KP+YVFDGKPP +KSGEL KR E+R +A+KAL +A+E+G K ++ E
Sbjct: 68 FYRTIRMIDNGIKPVYVFDGKPPDMKSGELEKRTERRAEAEKALTEAKEKGDAKEAEKFE 127
Query: 417 DGLVK 421
LVK
Sbjct: 128 RRLVK 132
Score = 109 bits (273), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 48/75 (64%), Positives = 58/75 (77%)
Query: 232 FIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGWLYKEAREL 291
FIDLCILLGCDYC +IRGIGPK+A+ELIK+H++IE +LENID KY P W YK AREL
Sbjct: 223 FIDLCILLGCDYCGTIRGIGPKKAVELIKQHKNIETVLENIDQTKYPPPADWPYKRAREL 282
Query: 292 FRHPEIADPETIELV 306
F PE+ + +EL
Sbjct: 283 FHEPEVMKCDEVELT 297
Score = 79.0 bits (193), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 36/70 (51%), Positives = 51/70 (72%), Gaps = 6/70 (8%)
Query: 3 LKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSSTTQGRLDSFFTIRRE------ 56
L W DPD +G+VK++CG+KNF+EDRIR+ ++ K+R++ TQGR+DSFFT+ +
Sbjct: 296 LTWKDPDVEGIVKFMCGEKNFSEDRIRSAMVRMQKSRNAGTQGRIDSFFTVSSQVKCVTV 355
Query: 57 EKRKAPCEAE 66
KRKA EAE
Sbjct: 356 AKRKAQEEAE 365
Score = 76.3 bits (186), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 30/57 (52%), Positives = 45/57 (78%)
Query: 408 KLKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSTTTQGRLDSFFTIRREEK 464
+L W DPD +G+VK++CG+KNF+EDRIR+ ++ K+R+ TQGR+DSFFT+ + K
Sbjct: 295 ELTWKDPDVEGIVKFMCGEKNFSEDRIRSAMVRMQKSRNAGTQGRIDSFFTVSSQVK 351
>gi|320165003|gb|EFW41902.1| flap endonuclease 1-B [Capsaspora owczarzaki ATCC 30864]
Length = 388
Score = 208 bits (529), Expect = 6e-51, Method: Compositional matrix adjust.
Identities = 89/142 (62%), Positives = 120/142 (84%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVLE 120
APCEAEAQCAA+VK+G V+A TEDMDALTFGS +LLRH+TFSEARK+P++EF+L++ LE
Sbjct: 155 APCEAEAQCAALVKSGSVFAAGTEDMDALTFGSKVLLRHLTFSEARKMPIKEFNLDRALE 214
Query: 121 GMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGW 180
G++L+ E+F+DLCILLGCDYC+SI+GIGP RA LI+E+++IE+I++N+DT+KY +P W
Sbjct: 215 GLKLTMEQFVDLCILLGCDYCESIKGIGPTRAYALIQEYKTIEEIIKNLDTEKYPLPANW 274
Query: 181 LYKEARELFRHPEVADPETIEF 202
+ EAR LF PEV E ++
Sbjct: 275 AFAEARTLFLEPEVTPGEELDL 296
Score = 145 bits (367), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 73/125 (58%), Positives = 94/125 (75%), Gaps = 7/125 (5%)
Query: 304 ELVADVAPSSIRES-------RKICIDASMSLYQFLIAVRSEGNQLMSVDGEPTSHLMGT 356
+L+AD AP +RE+ RK+ IDASMS+YQFLIAVRSEGNQLM+ GE TSHL+G
Sbjct: 8 KLLADQAPHCVRENVIKAYFGRKVAIDASMSMYQFLIAVRSEGNQLMNDAGETTSHLVGF 67
Query: 357 FYRTIRLVEHGLKPIYVFDGKPPTLKSGELNKRMEKREDAQKALAKAQEQGKLKWSDPDE 416
FYRTIR++E+G+KP+YVFDGKPP +KSGEL KR +RE+AQ +L A E G+ + + +
Sbjct: 68 FYRTIRMLENGIKPVYVFDGKPPVMKSGELAKRTARREEAQASLDAATEAGESETMEKFQ 127
Query: 417 DGLVK 421
LVK
Sbjct: 128 RRLVK 132
Score = 103 bits (256), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 42/74 (56%), Positives = 59/74 (79%)
Query: 232 FIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGWLYKEAREL 291
F+DLCILLGCDYC+SI+GIGP RA LI+E+++IE+I++N+DT+KY +P W + EAR L
Sbjct: 223 FVDLCILLGCDYCESIKGIGPTRAYALIQEYKTIEEIIKNLDTEKYPLPANWAFAEARTL 282
Query: 292 FRHPEIADPETIEL 305
F PE+ E ++L
Sbjct: 283 FLEPEVTPGEELDL 296
Score = 75.9 bits (185), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 36/65 (55%), Positives = 47/65 (72%), Gaps = 2/65 (3%)
Query: 405 EQGKLKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSTTTQGRLDSFFTIRR--E 462
E+ LKW+ PD +GLVK++ +K F+EDRIRN A KL+ +ST TQGRLD+FFT+
Sbjct: 292 EELDLKWTAPDVEGLVKFMVQEKGFSEDRIRNNAAKLVDLKSTATQGRLDNFFTVSGVVS 351
Query: 463 EKRKS 467
KRKS
Sbjct: 352 SKRKS 356
Score = 74.7 bits (182), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 37/85 (43%), Positives = 51/85 (60%), Gaps = 9/85 (10%)
Query: 1 MTLKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSSTTQGRLDSFFTI------- 53
+ LKW+ PD +GLVK++ +K F+EDRIRN A KL+ +S+ TQGRLD+FFT+
Sbjct: 294 LDLKWTAPDVEGLVKFMVQEKGFSEDRIRNNAAKLVDLKSTATQGRLDNFFTVSGVVSSK 353
Query: 54 --RREEKRKAPCEAEAQCAAMVKAG 76
EE K + +MVK G
Sbjct: 354 RKSEEELAKEAKKGRMSVKSMVKGG 378
>gi|391334775|ref|XP_003741776.1| PREDICTED: flap endonuclease 1-like [Metaseiulus occidentalis]
Length = 379
Score = 206 bits (525), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 93/142 (65%), Positives = 115/142 (80%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVLE 120
APCEAEAQCA +VKA KVYA ATEDMD LTFG+++LLRHMTFSEARK+P++EF+L K+L
Sbjct: 155 APCEAEAQCAELVKAQKVYAAATEDMDCLTFGASVLLRHMTFSEARKMPIKEFNLPKILA 214
Query: 121 GMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGW 180
+ + EFIDLCILLGCDYC +I+GIGPKRAIEL++ HR IE +L+NIDTKKY PE W
Sbjct: 215 ELNFTQREFIDLCILLGCDYCGTIKGIGPKRAIELMRSHRCIENVLKNIDTKKYPPPEDW 274
Query: 181 LYKEARELFRHPEVADPETIEF 202
++ ARELF P+V ++F
Sbjct: 275 QFERARELFEKPDVTPGSELDF 296
Score = 146 bits (369), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 71/111 (63%), Positives = 86/111 (77%), Gaps = 7/111 (6%)
Query: 304 ELVADVAPSSIRES-------RKICIDASMSLYQFLIAVRSEGNQLMSVDGEPTSHLMGT 356
+L+ADVAP +I+E RKI +DASM LYQFLIAVR E N L + DGE TSHL+G
Sbjct: 8 KLIADVAPGAIKEGEIKNFFGRKIALDASMCLYQFLIAVRQENNMLTNADGETTSHLVGF 67
Query: 357 FYRTIRLVEHGLKPIYVFDGKPPTLKSGELNKRMEKREDAQKALAKAQEQG 407
FYRTIR++E+G+KP+YVFDGKPP +KSGEL KR E+RE+AQK L KA E G
Sbjct: 68 FYRTIRMIENGIKPLYVFDGKPPDMKSGELEKRAERREEAQKELDKATEVG 118
Score = 107 bits (268), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 49/80 (61%), Positives = 61/80 (76%), Gaps = 3/80 (3%)
Query: 222 PKRAIELLYS---FIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYT 278
PK EL ++ FIDLCILLGCDYC +I+GIGPKRAIEL++ HR IE +L+NIDTKKY
Sbjct: 210 PKILAELNFTQREFIDLCILLGCDYCGTIKGIGPKRAIELMRSHRCIENVLKNIDTKKYP 269
Query: 279 VPEGWLYKEARELFRHPEIA 298
PE W ++ ARELF P++
Sbjct: 270 PPEDWQFERARELFEKPDVT 289
Score = 75.9 bits (185), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 32/51 (62%), Positives = 42/51 (82%)
Query: 1 MTLKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSSTTQGRLDSFF 51
+ KW++PDE+GLVK+LC + F E+RIRNGAKKL K +SS+ QGRLDS+F
Sbjct: 294 LDFKWTEPDEEGLVKFLCEENGFNEERIRNGAKKLQKGKSSSQQGRLDSYF 344
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 31/49 (63%), Positives = 41/49 (83%)
Query: 409 LKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSTTTQGRLDSFF 457
KW++PDE+GLVK+LC + F E+RIRNGAKKL K +S++ QGRLDS+F
Sbjct: 296 FKWTEPDEEGLVKFLCEENGFNEERIRNGAKKLQKGKSSSQQGRLDSYF 344
>gi|339253602|ref|XP_003372024.1| flap endonuclease 1a [Trichinella spiralis]
gi|316967624|gb|EFV52031.1| flap endonuclease 1a [Trichinella spiralis]
Length = 381
Score = 205 bits (521), Expect = 6e-50, Method: Compositional matrix adjust.
Identities = 89/143 (62%), Positives = 118/143 (82%)
Query: 60 KAPCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVL 119
+APCEAEAQCAA+VKA KV+A ATEDMD LTFGS+I+LR++TFSEA+K+P++EF + VL
Sbjct: 164 EAPCEAEAQCAALVKAKKVFAAATEDMDTLTFGSDIMLRYLTFSEAKKMPIKEFRFDDVL 223
Query: 120 EGMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEG 179
G+ ++HEEF+D CILLGCDYC +I+G+GPK+A +LIK++R++E I+E +D KKY +PE
Sbjct: 224 HGLNMTHEEFVDFCILLGCDYCPTIKGVGPKKAYDLIKQYRNLEVIVEKLDKKKYPIPEN 283
Query: 180 WLYKEARELFRHPEVADPETIEF 202
W YK R+LF PEV D TIE
Sbjct: 284 WQYKAVRKLFLEPEVIDCNTIEL 306
Score = 124 bits (312), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 63/121 (52%), Positives = 84/121 (69%), Gaps = 17/121 (14%)
Query: 304 ELVADVAPSSIRE-------SRKICIDASMSLYQFLIAVRSEGNQLMSVDGEPTSHLMGT 356
+++AD +P++I E R I IDASMSLYQFLIA+R +G+QL + GE TSHL+G
Sbjct: 8 KVIADFSPNAITERTMNSFFGRTIAIDASMSLYQFLIAIRQDGSQLSAESGETTSHLIGM 67
Query: 357 FYRTIRLVEHGLKPIYVFDGKPPTLKSGE----------LNKRMEKREDAQKALAKAQEQ 406
FYRTIR+VE+G+KP+YVFDGKPP LKS E L+KR E+R +A++ A A +
Sbjct: 68 FYRTIRMVENGIKPVYVFDGKPPVLKSDEVHFLICTFVSLDKRTERRTEAEEKYADAVQA 127
Query: 407 G 407
G
Sbjct: 128 G 128
Score = 103 bits (256), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 43/75 (57%), Positives = 58/75 (77%)
Query: 232 FIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGWLYKEAREL 291
F+D CILLGCDYC +I+G+GPK+A +LIK++R++E I+E +D KKY +PE W YK R+L
Sbjct: 233 FVDFCILLGCDYCPTIKGVGPKKAYDLIKQYRNLEVIVEKLDKKKYPIPENWQYKAVRKL 292
Query: 292 FRHPEIADPETIELV 306
F PE+ D TIEL
Sbjct: 293 FLEPEVIDCNTIELT 307
Score = 75.5 bits (184), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 32/65 (49%), Positives = 44/65 (67%)
Query: 3 LKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSSTTQGRLDSFFTIRREEKRKAP 62
L W DPDE GL+ +L +KNF +R+ NG KLL AR S+TQGR+DSFFT+ +K++
Sbjct: 306 LTWKDPDEQGLITFLVNEKNFGHNRVVNGCAKLLSARRSSTQGRIDSFFTVLVTKKKRPA 365
Query: 63 CEAEA 67
E +
Sbjct: 366 DEGSS 370
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 30/59 (50%), Positives = 43/59 (72%)
Query: 408 KLKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSTTTQGRLDSFFTIRREEKRK 466
+L W DPDE GL+ +L +KNF +R+ NG KLL AR ++TQGR+DSFFT+ +K++
Sbjct: 305 ELTWKDPDEQGLITFLVNEKNFGHNRVVNGCAKLLSARRSSTQGRIDSFFTVLVTKKKR 363
>gi|449685242|ref|XP_002159259.2| PREDICTED: flap endonuclease 1-like, partial [Hydra magnipapillata]
Length = 230
Score = 204 bits (519), Expect = 9e-50, Method: Compositional matrix adjust.
Identities = 91/143 (63%), Positives = 120/143 (83%), Gaps = 1/143 (0%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVLE 120
APCEAEAQCA +VK GKVYA +EDMD+LTFG+NILLRH+TFSEARK+P+QEFH KVLE
Sbjct: 59 APCEAEAQCAELVKGGKVYAMGSEDMDSLTFGANILLRHLTFSEARKMPIQEFHYSKVLE 118
Query: 121 GMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTK-KYTVPEG 179
+EL+ E+F+DLCILLGCDYC SI+G+GP A++LIKEHR+IE I++++ +K KYT+PE
Sbjct: 119 ELELTKEQFVDLCILLGCDYCASIKGVGPVTAMKLIKEHRNIEGIIKHLQSKDKYTIPEN 178
Query: 180 WLYKEARELFRHPEVADPETIEF 202
W+Y+++R LF PEV + ++
Sbjct: 179 WMYEDSRLLFLEPEVTPADQVQL 201
Score = 97.8 bits (242), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 41/75 (54%), Positives = 61/75 (81%), Gaps = 1/75 (1%)
Query: 232 FIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTK-KYTVPEGWLYKEARE 290
F+DLCILLGCDYC SI+G+GP A++LIKEHR+IE I++++ +K KYT+PE W+Y+++R
Sbjct: 127 FVDLCILLGCDYCASIKGVGPVTAMKLIKEHRNIEGIIKHLQSKDKYTIPENWMYEDSRL 186
Query: 291 LFRHPEIADPETIEL 305
LF PE+ + ++L
Sbjct: 187 LFLEPEVTPADQVQL 201
>gi|167536429|ref|XP_001749886.1| hypothetical protein [Monosiga brevicollis MX1]
gi|317374912|sp|A9VB27.1|FEN1_MONBE RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|163771601|gb|EDQ85265.1| predicted protein [Monosiga brevicollis MX1]
Length = 368
Score = 204 bits (518), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 94/142 (66%), Positives = 117/142 (82%), Gaps = 2/142 (1%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVLE 120
AP EAEAQCA +VK GKV+ATATEDMDALTFG+ +LLRHMTFSEARK+P+QEF L+K
Sbjct: 155 APTEAEAQCAELVKGGKVFATATEDMDALTFGTTVLLRHMTFSEARKMPIQEFRLQK--G 212
Query: 121 GMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGW 180
G+E+S EEFID+CILLGCDYCDSI+GIG ++A +LIKEH++IE +L+++D KKY +PE W
Sbjct: 213 GLEMSMEEFIDMCILLGCDYCDSIKGIGRQKAYQLIKEHKNIETVLKHLDPKKYVIPEDW 272
Query: 181 LYKEARELFRHPEVADPETIEF 202
+ EARELF P+V EF
Sbjct: 273 HFAEARELFLRPDVTPAAECEF 294
Score = 141 bits (355), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 67/111 (60%), Positives = 87/111 (78%), Gaps = 7/111 (6%)
Query: 304 ELVADVAPSSIRES-------RKICIDASMSLYQFLIAVRSEGNQLMSVDGEPTSHLMGT 356
+++AD AP +I+E+ RK+ IDASMS+YQFLIA+RSEG+ L++ GE TSHL G
Sbjct: 8 KVIADKAPDAIKETEIKNLFDRKVAIDASMSIYQFLIAIRSEGSNLVNEAGEATSHLSGL 67
Query: 357 FYRTIRLVEHGLKPIYVFDGKPPTLKSGELNKRMEKREDAQKALAKAQEQG 407
FYRTIR+V HG+KP+YVFDGKPPT+KSGEL KR +R++AQ L +A EQG
Sbjct: 68 FYRTIRMVNHGIKPLYVFDGKPPTMKSGELLKRGARRKEAQANLEEATEQG 118
Score = 100 bits (249), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 41/66 (62%), Positives = 56/66 (84%)
Query: 232 FIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGWLYKEAREL 291
FID+CILLGCDYCDSI+GIG ++A +LIKEH++IE +L+++D KKY +PE W + EAREL
Sbjct: 221 FIDMCILLGCDYCDSIKGIGRQKAYQLIKEHKNIETVLKHLDPKKYVIPEDWHFAEAREL 280
Query: 292 FRHPEI 297
F P++
Sbjct: 281 FLRPDV 286
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 32/50 (64%), Positives = 38/50 (76%)
Query: 3 LKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSSTTQGRLDSFFT 52
KW+ PD DGLVK++C + FAEDRIR A+KL+KAR QGRLDSFFT
Sbjct: 294 FKWTTPDIDGLVKFMCQENGFAEDRIRKSAEKLVKARKGGQQGRLDSFFT 343
Score = 73.2 bits (178), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 32/51 (62%), Positives = 39/51 (76%)
Query: 408 KLKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSTTTQGRLDSFFT 458
+ KW+ PD DGLVK++C + FAEDRIR A+KL+KAR QGRLDSFFT
Sbjct: 293 EFKWTTPDIDGLVKFMCQENGFAEDRIRKSAEKLVKARKGGQQGRLDSFFT 343
>gi|256064183|ref|XP_002570412.1| flap endonuclease-1 [Schistosoma mansoni]
Length = 241
Score = 202 bits (513), Expect = 5e-49, Method: Compositional matrix adjust.
Identities = 88/143 (61%), Positives = 118/143 (82%)
Query: 60 KAPCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVL 119
AP EAEAQCA + K+GKVYA TEDMDAL FG+ +LLRH+TFSEARK+ +QEF+L VL
Sbjct: 7 NAPGEAEAQCAVLAKSGKVYAVGTEDMDALAFGTPVLLRHLTFSEARKMAIQEFNLTSVL 66
Query: 120 EGMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEG 179
EG+ L+ ++FIDLCILLGCDY D+IRGIGPK+A++L+ +++SI+ +L+NID KY VP+
Sbjct: 67 EGLGLTMDQFIDLCILLGCDYVDTIRGIGPKKALDLLHKYQSIDCVLKNIDKSKYIVPDD 126
Query: 180 WLYKEARELFRHPEVADPETIEF 202
W Y++A++LF +PEV DP +IE
Sbjct: 127 WPYEDAKKLFLNPEVTDPSSIEL 149
Score = 107 bits (267), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 44/74 (59%), Positives = 63/74 (85%)
Query: 232 FIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGWLYKEAREL 291
FIDLCILLGCDY D+IRGIGPK+A++L+ +++SI+ +L+NID KY VP+ W Y++A++L
Sbjct: 76 FIDLCILLGCDYVDTIRGIGPKKALDLLHKYQSIDCVLKNIDKSKYIVPDDWPYEDAKKL 135
Query: 292 FRHPEIADPETIEL 305
F +PE+ DP +IEL
Sbjct: 136 FLNPEVTDPSSIEL 149
Score = 81.6 bits (200), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 39/69 (56%), Positives = 52/69 (75%), Gaps = 4/69 (5%)
Query: 394 EDAQKALAKAQ----EQGKLKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSTTT 449
EDA+K + +LKW++PDE+GLV++LC F E+RIRNGAKKLLKA++TTT
Sbjct: 130 EDAKKLFLNPEVTDPSSIELKWNEPDEEGLVEFLCHKHGFNEERIRNGAKKLLKAKNTTT 189
Query: 450 QGRLDSFFT 458
QGR+D+FFT
Sbjct: 190 QGRIDNFFT 198
Score = 80.1 bits (196), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 34/50 (68%), Positives = 45/50 (90%)
Query: 3 LKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSSTTQGRLDSFFT 52
LKW++PDE+GLV++LC F E+RIRNGAKKLLKA+++TTQGR+D+FFT
Sbjct: 149 LKWNEPDEEGLVEFLCHKHGFNEERIRNGAKKLLKAKNTTTQGRIDNFFT 198
>gi|390332710|ref|XP_001197560.2| PREDICTED: LOW QUALITY PROTEIN: flap endonuclease 1-like
[Strongylocentrotus purpuratus]
Length = 384
Score = 201 bits (512), Expect = 6e-49, Method: Compositional matrix adjust.
Identities = 96/151 (63%), Positives = 116/151 (76%), Gaps = 2/151 (1%)
Query: 60 KAPCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVL 119
KAP EAEAQC +VK GK+Y TEDMDALTFG N+LLRH+T SEARK+P+QEF+ ++VL
Sbjct: 154 KAPGEAEAQCCELVKKGKLYGVGTEDMDALTFGGNVLLRHLTVSEARKMPIQEFNYQRVL 213
Query: 120 EGMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEG 179
EG+ L+ ++FIDLCIL+GCDYC +I+GIG KRA EL+K H SIE ILE ID KY PE
Sbjct: 214 EGLGLNRQQFIDLCILMGCDYCGTIKGIGMKRAFELMKTHGSIETILEKIDQNKYPPPED 273
Query: 180 WLYKEARELFRHPEVADPE--TIEFIDLCIL 208
WLYKEARELF P+V E + F LCI+
Sbjct: 274 WLYKEARELFLSPDVTPGEEFDVRFXFLCII 304
Score = 143 bits (361), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 73/124 (58%), Positives = 91/124 (73%), Gaps = 7/124 (5%)
Query: 305 LVADVAPSSIRES-------RKICIDASMSLYQFLIAVRSEGNQLMSVDGEPTSHLMGTF 357
L+AD AP ++RE+ RK+ IDASM +YQFLIAVR +G+ L + +GE TSHLMG F
Sbjct: 9 LIADCAPGAVRENEFKSYFGRKVAIDASMCIYQFLIAVRQDGSVLTNEEGETTSHLMGIF 68
Query: 358 YRTIRLVEHGLKPIYVFDGKPPTLKSGELNKRMEKREDAQKALAKAQEQGKLKWSDPDED 417
YRTIR++EHGLKP YVFDGKPP +KSGEL KR E R +A+K L KA+EQG + + E
Sbjct: 69 YRTIRMIEHGLKPCYVFDGKPPEMKSGELTKRKEMRAEAEKELEKAKEQGDQENMNKFEK 128
Query: 418 GLVK 421
LVK
Sbjct: 129 RLVK 132
Score = 104 bits (260), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 55/118 (46%), Positives = 70/118 (59%), Gaps = 11/118 (9%)
Query: 188 LFRHPEVADPETIEFIDLCILLGCDYCDSIRGIGPKRAIELLYSFIDLCILLGCDYCDSI 247
L RH V++ + + +Y + G+G R FIDLCIL+GCDYC +I
Sbjct: 190 LLRHLTVSEARKMPIQEF------NYQRVLEGLGLNRQ-----QFIDLCILMGCDYCGTI 238
Query: 248 RGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGWLYKEARELFRHPEIADPETIEL 305
+GIG KRA EL+K H SIE ILE ID KY PE WLYKEARELF P++ E ++
Sbjct: 239 KGIGMKRAFELMKTHGSIETILEKIDQNKYPPPEDWLYKEARELFLSPDVTPGEEFDV 296
Score = 53.5 bits (127), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 22/32 (68%), Positives = 29/32 (90%)
Query: 23 FAEDRIRNGAKKLLKARSSTTQGRLDSFFTIR 54
++EDR+RNG KKL+KAR+ TQGRLDSFFT++
Sbjct: 321 YSEDRMRNGCKKLVKARTGATQGRLDSFFTLK 352
Score = 52.8 bits (125), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 22/32 (68%), Positives = 29/32 (90%)
Query: 429 FAEDRIRNGAKKLLKARSTTTQGRLDSFFTIR 460
++EDR+RNG KKL+KAR+ TQGRLDSFFT++
Sbjct: 321 YSEDRMRNGCKKLVKARTGATQGRLDSFFTLK 352
>gi|226478114|emb|CAX72750.1| Flap endonuclease 1 [Schistosoma japonicum]
Length = 389
Score = 201 bits (511), Expect = 8e-49, Method: Compositional matrix adjust.
Identities = 88/142 (61%), Positives = 116/142 (81%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVLE 120
AP EAEAQCAA+ K+GKVYA TEDMDAL FG+ +LLRH+TFSEARK+ +QEF+L VLE
Sbjct: 155 APGEAEAQCAALAKSGKVYAVGTEDMDALAFGTPVLLRHLTFSEARKMAIQEFNLASVLE 214
Query: 121 GMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGW 180
G+ L+ ++F+DLCILLGCDY D+IRGIGPK+A++L+ ++ SI+ +L+NID KY VP W
Sbjct: 215 GLSLTMDQFVDLCILLGCDYVDTIRGIGPKKALDLLHKYHSIDCVLKNIDKSKYPVPNDW 274
Query: 181 LYKEARELFRHPEVADPETIEF 202
Y++A++LF +PEV DP IE
Sbjct: 275 PYEDAKKLFLNPEVTDPSLIEL 296
Score = 133 bits (335), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 62/104 (59%), Positives = 82/104 (78%)
Query: 318 RKICIDASMSLYQFLIAVRSEGNQLMSVDGEPTSHLMGTFYRTIRLVEHGLKPIYVFDGK 377
RK+ IDASMS+YQFLIAVR EGN LM+ +GE TSHLMG FYRTIR++E G+KP+YVF+GK
Sbjct: 29 RKVAIDASMSIYQFLIAVRQEGNTLMNAEGESTSHLMGMFYRTIRMIESGIKPVYVFEGK 88
Query: 378 PPTLKSGELNKRMEKREDAQKALAKAQEQGKLKWSDPDEDGLVK 421
PP++K+GEL KR ++R ++ K LAKA+ + L+ + LVK
Sbjct: 89 PPSMKAGELAKRADRRIESTKELAKAEAEEDLEAIEKFSKRLVK 132
Score = 105 bits (261), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 44/77 (57%), Positives = 61/77 (79%)
Query: 232 FIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGWLYKEAREL 291
F+DLCILLGCDY D+IRGIGPK+A++L+ ++ SI+ +L+NID KY VP W Y++A++L
Sbjct: 223 FVDLCILLGCDYVDTIRGIGPKKALDLLHKYHSIDCVLKNIDKSKYPVPNDWPYEDAKKL 282
Query: 292 FRHPEIADPETIELVAD 308
F +PE+ DP IEL D
Sbjct: 283 FLNPEVTDPSLIELKWD 299
Score = 80.9 bits (198), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 34/50 (68%), Positives = 43/50 (86%)
Query: 409 LKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSTTTQGRLDSFFT 458
LKW +PDE+GLV++LC F E+RIRNGAKKL KA++TTTQGR+D+FFT
Sbjct: 296 LKWDEPDEEGLVEFLCHKHGFNEERIRNGAKKLFKAKNTTTQGRIDNFFT 345
Score = 79.3 bits (194), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 33/50 (66%), Positives = 43/50 (86%)
Query: 3 LKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSSTTQGRLDSFFT 52
LKW +PDE+GLV++LC F E+RIRNGAKKL KA+++TTQGR+D+FFT
Sbjct: 296 LKWDEPDEEGLVEFLCHKHGFNEERIRNGAKKLFKAKNTTTQGRIDNFFT 345
>gi|324514356|gb|ADY45841.1| Flap endonuclease 1-B [Ascaris suum]
Length = 320
Score = 199 bits (505), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 90/142 (63%), Positives = 114/142 (80%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVLE 120
APCEAEAQCA +V+AGKV+A ATEDMDAL FGS LLR +T SEA+KLPV+E +LE+VL+
Sbjct: 91 APCEAEAQCAELVRAGKVFAAATEDMDALAFGSKRLLRQLTASEAKKLPVKEINLEQVLK 150
Query: 121 GMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGW 180
E+ +F+DLCILLGCDY +IRGIGPK+A ELI++H++IE +LENIDT+KY VPE W
Sbjct: 151 DFEMDMPQFVDLCILLGCDYTKTIRGIGPKKAFELIQKHKTIENVLENIDTEKYPVPENW 210
Query: 181 LYKEARELFRHPEVADPETIEF 202
++EAR LF PE+ + E I
Sbjct: 211 QFREARRLFMKPEITNCEDINL 232
Score = 112 bits (279), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 48/74 (64%), Positives = 60/74 (81%)
Query: 232 FIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGWLYKEAREL 291
F+DLCILLGCDY +IRGIGPK+A ELI++H++IE +LENIDT+KY VPE W ++EAR L
Sbjct: 159 FVDLCILLGCDYTKTIRGIGPKKAFELIQKHKTIENVLENIDTEKYPVPENWQFREARRL 218
Query: 292 FRHPEIADPETIEL 305
F PEI + E I L
Sbjct: 219 FMKPEITNCEDINL 232
Score = 78.6 bits (192), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 43/90 (47%), Positives = 60/90 (66%), Gaps = 8/90 (8%)
Query: 354 MGTFYRTIRLVEHGLKPIYVFDGKPPTLKSGELNKRMEKREDAQKALAKAQEQGKLKWSD 413
MG FYRT+R++ +G+KP+YVFDGKPP +K EL KR E+R +A+K LA+A+E+G +
Sbjct: 1 MGMFYRTVRMITNGIKPVYVFDGKPPEMKCEELEKRTERRVEAEKQLAEAKEKGDAMAVE 60
Query: 414 PDEDGLVKYLCGDKNFAEDRIRNGAKKLLK 443
E LVK + D+N AKKLL+
Sbjct: 61 KFERRLVK-VTKDQN-------EEAKKLLR 82
Score = 67.4 bits (163), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 26/53 (49%), Positives = 39/53 (73%)
Query: 1 MTLKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSSTTQGRLDSFFTI 53
+ L+W PD + +V+YLCG+KNF E+R+R+ ++ K R S QGR+DSFFT+
Sbjct: 230 INLQWGKPDTEEIVRYLCGEKNFNEERVRSSLVRMEKGRQSAQQGRIDSFFTV 282
Score = 65.5 bits (158), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 25/51 (49%), Positives = 38/51 (74%)
Query: 409 LKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSTTTQGRLDSFFTI 459
L+W PD + +V+YLCG+KNF E+R+R+ ++ K R + QGR+DSFFT+
Sbjct: 232 LQWGKPDTEEIVRYLCGEKNFNEERVRSSLVRMEKGRQSAQQGRIDSFFTV 282
>gi|340367941|ref|XP_003382511.1| PREDICTED: flap endonuclease 1-like [Amphimedon queenslandica]
Length = 373
Score = 199 bits (505), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 90/142 (63%), Positives = 116/142 (81%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVLE 120
APCEAEAQCAA+ KAGKVYATATEDMDALTFGS+IL+R++T SEARKLPV+E +L K L
Sbjct: 155 APCEAEAQCAALTKAGKVYATATEDMDALTFGSSILVRNLTASEARKLPVREINLSKALT 214
Query: 121 GMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGW 180
+++ +FIDLCILLGCDYCDSI+GIGP A++L+++H +IEKIL+ + KKY +PE W
Sbjct: 215 ELDMDQSQFIDLCILLGCDYCDSIKGIGPVNAMKLLRQHGNIEKILKGLSGKKYQIPENW 274
Query: 181 LYKEARELFRHPEVADPETIEF 202
++EAR LF P+V+ + IE
Sbjct: 275 PFEEARRLFVEPDVSPADDIEL 296
Score = 150 bits (379), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 76/125 (60%), Positives = 95/125 (76%), Gaps = 7/125 (5%)
Query: 304 ELVADVAPSSIRE-------SRKICIDASMSLYQFLIAVRSEGNQLMSVDGEPTSHLMGT 356
+L+ D APSSI+E RKI IDASMSLYQFLIAVR +G LM+ GE TSHLMG
Sbjct: 8 KLLGDYAPSSIKEHEYKSYFGRKIAIDASMSLYQFLIAVRQDGQVLMTESGETTSHLMGF 67
Query: 357 FYRTIRLVEHGLKPIYVFDGKPPTLKSGELNKRMEKREDAQKALAKAQEQGKLKWSDPDE 416
FYRTIR+V++G+KP+YVFDGKPPT+KSGEL KR ++R +AQK L KA+EQG ++ + +
Sbjct: 68 FYRTIRMVDNGIKPVYVFDGKPPTMKSGELAKRADRRAEAQKELLKAEEQGDIQEVEKFQ 127
Query: 417 DGLVK 421
LVK
Sbjct: 128 KRLVK 132
Score = 102 bits (255), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 43/74 (58%), Positives = 59/74 (79%)
Query: 232 FIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGWLYKEAREL 291
FIDLCILLGCDYCDSI+GIGP A++L+++H +IEKIL+ + KKY +PE W ++EAR L
Sbjct: 223 FIDLCILLGCDYCDSIKGIGPVNAMKLLRQHGNIEKILKGLSGKKYQIPENWPFEEARRL 282
Query: 292 FRHPEIADPETIEL 305
F P+++ + IEL
Sbjct: 283 FVEPDVSPADDIEL 296
Score = 79.7 bits (195), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 33/51 (64%), Positives = 43/51 (84%)
Query: 1 MTLKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSSTTQGRLDSFF 51
+ LKW +PDE+G+VK+L +K F+EDRIRNG KKLLK++ +TQGRLDSFF
Sbjct: 294 IELKWGNPDEEGIVKFLVEEKGFSEDRIRNGVKKLLKSKQGSTQGRLDSFF 344
Score = 79.0 bits (193), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 33/49 (67%), Positives = 42/49 (85%)
Query: 409 LKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSTTTQGRLDSFF 457
LKW +PDE+G+VK+L +K F+EDRIRNG KKLLK++ +TQGRLDSFF
Sbjct: 296 LKWGNPDEEGIVKFLVEEKGFSEDRIRNGVKKLLKSKQGSTQGRLDSFF 344
>gi|330797354|ref|XP_003286726.1| hypothetical protein DICPUDRAFT_31355 [Dictyostelium purpureum]
gi|325083324|gb|EGC36780.1| hypothetical protein DICPUDRAFT_31355 [Dictyostelium purpureum]
Length = 383
Score = 197 bits (501), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 86/135 (63%), Positives = 115/135 (85%)
Query: 60 KAPCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVL 119
KAPCEAEAQCA +VK+GK +AT +EDMD+LT GS +LLR + FSEA+K+P+ EF L VL
Sbjct: 155 KAPCEAEAQCAEIVKSGKAWATGSEDMDSLTLGSTVLLRRLFFSEAKKMPILEFELPSVL 214
Query: 120 EGMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEG 179
EG+ L++EEFIDL ILLGCDYCDSI+GIGPKRA ELI++H+++E+I++++D KY +PE
Sbjct: 215 EGLGLTYEEFIDLGILLGCDYCDSIKGIGPKRAFELIQKHKTLEEIIKHLDKSKYPIPEF 274
Query: 180 WLYKEARELFRHPEV 194
+ Y+E RELF+HP+V
Sbjct: 275 FPYQEVRELFKHPDV 289
Score = 118 bits (295), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 62/112 (55%), Positives = 79/112 (70%), Gaps = 8/112 (7%)
Query: 304 ELVADVAPSSIRES-------RKICIDASMSLYQFLIAVRSE-GNQLMSVDGEPTSHLMG 355
+L+ D AP+SI+ + R I IDAS SLYQFLIA+ ++ + L + GE TSHL G
Sbjct: 8 DLIEDNAPTSIKTNLLKNYFGRIIAIDASTSLYQFLIAMNADVSSALTNQLGETTSHLQG 67
Query: 356 TFYRTIRLVEHGLKPIYVFDGKPPTLKSGELNKRMEKREDAQKALAKAQEQG 407
FYRTI+L+ G+KPIYVFDGKPPTLKSGEL KR KR++A +L +A E G
Sbjct: 68 MFYRTIKLISKGIKPIYVFDGKPPTLKSGELAKRQAKRKEATDSLKEATEVG 119
Score = 101 bits (252), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 41/66 (62%), Positives = 58/66 (87%)
Query: 232 FIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGWLYKEAREL 291
FIDL ILLGCDYCDSI+GIGPKRA ELI++H+++E+I++++D KY +PE + Y+E REL
Sbjct: 224 FIDLGILLGCDYCDSIKGIGPKRAFELIQKHKTLEEIIKHLDKSKYPIPEFFPYQEVREL 283
Query: 292 FRHPEI 297
F+HP++
Sbjct: 284 FKHPDV 289
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 36/54 (66%)
Query: 409 LKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSTTTQGRLDSFFTIRRE 462
+W DPD +GL ++L + F++ R+ G +KL K ++T+ Q R+DSF TI ++
Sbjct: 298 FQWKDPDVEGLNEFLVKEMGFSDVRVAQGIEKLKKFKNTSVQSRMDSFITIVKK 351
Score = 50.1 bits (118), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 36/54 (66%)
Query: 3 LKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSSTTQGRLDSFFTIRRE 56
+W DPD +GL ++L + F++ R+ G +KL K ++++ Q R+DSF TI ++
Sbjct: 298 FQWKDPDVEGLNEFLVKEMGFSDVRVAQGIEKLKKFKNTSVQSRMDSFITIVKK 351
>gi|312082398|ref|XP_003143428.1| flap endonuclease-1 [Loa loa]
gi|307761410|gb|EFO20644.1| flap endonuclease-1 [Loa loa]
Length = 345
Score = 195 bits (495), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 90/143 (62%), Positives = 112/143 (78%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVLE 120
APCEAEAQCAA+ +AGKV+AT +EDMDALTFGS ILLR M SEA+KLPV+E +L +VL+
Sbjct: 155 APCEAEAQCAALARAGKVFATVSEDMDALTFGSPILLRQMIASEAKKLPVKEMNLNQVLK 214
Query: 121 GMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGW 180
++ E+FIDLCILLGCDY +IRGIGPK+A ELIK+H IE +L+ ID KY +P+ W
Sbjct: 215 DFGMNMEQFIDLCILLGCDYVSTIRGIGPKKAFELIKKHECIENVLKIIDQTKYAIPKNW 274
Query: 181 LYKEARELFRHPEVADPETIEFI 203
YKEAR LF P+V D E +E +
Sbjct: 275 QYKEARRLFLEPDVMDCENVELV 297
Score = 126 bits (317), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 59/111 (53%), Positives = 82/111 (73%), Gaps = 7/111 (6%)
Query: 304 ELVADVAPSSIRE-------SRKICIDASMSLYQFLIAVRSEGNQLMSVDGEPTSHLMGT 356
+++ D +P SIR RK+ +DASM LYQFLIAVR +G+QL + GE TSHL+G
Sbjct: 8 KVIGDHSPGSIRLKEFKGYFGRKVAVDASMCLYQFLIAVRQDGSQLQTESGETTSHLLGM 67
Query: 357 FYRTIRLVEHGLKPIYVFDGKPPTLKSGELNKRMEKREDAQKALAKAQEQG 407
FYRTIR++++G+KP+YVFDGKPP +K+ EL KR+E+R +A+K + A E G
Sbjct: 68 FYRTIRMIDNGIKPVYVFDGKPPQMKTSELEKRIERRAEAEKQRSDAVELG 118
Score = 106 bits (264), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 47/75 (62%), Positives = 57/75 (76%)
Query: 232 FIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGWLYKEAREL 291
FIDLCILLGCDY +IRGIGPK+A ELIK+H IE +L+ ID KY +P+ W YKEAR L
Sbjct: 223 FIDLCILLGCDYVSTIRGIGPKKAFELIKKHECIENVLKIIDQTKYAIPKNWQYKEARRL 282
Query: 292 FRHPEIADPETIELV 306
F P++ D E +ELV
Sbjct: 283 FLEPDVMDCENVELV 297
Score = 59.3 bits (142), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 24/53 (45%), Positives = 36/53 (67%)
Query: 405 EQGKLKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSTTTQGRLDSFF 457
E +L W +PD +G+V++LCG+K+F EDR+R ++ K R Q R+DSFF
Sbjct: 292 ENVELVWKEPDVEGIVQFLCGEKSFNEDRVRGSLTRMQKGRQAAQQIRIDSFF 344
Score = 58.9 bits (141), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 23/49 (46%), Positives = 35/49 (71%)
Query: 3 LKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSSTTQGRLDSFF 51
L W +PD +G+V++LCG+K+F EDR+R ++ K R + Q R+DSFF
Sbjct: 296 LVWKEPDVEGIVQFLCGEKSFNEDRVRGSLTRMQKGRQAAQQIRIDSFF 344
>gi|66811596|ref|XP_639977.1| hypothetical protein DDB_G0284987 [Dictyostelium discoideum AX4]
gi|74854014|sp|Q54NU0.1|FEN1_DICDI RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|60466913|gb|EAL64957.1| hypothetical protein DDB_G0284987 [Dictyostelium discoideum AX4]
Length = 384
Score = 193 bits (491), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 85/135 (62%), Positives = 113/135 (83%)
Query: 60 KAPCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVL 119
KAPCEAEAQCA +VK GK +AT +EDMD+LT GS +LLR + FSEA+K+P+ EF L+ VL
Sbjct: 155 KAPCEAEAQCAEIVKKGKAWATGSEDMDSLTLGSTVLLRRLFFSEAKKMPILEFELQSVL 214
Query: 120 EGMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEG 179
EG+ L+ +EFIDL ILLGCDYCDSI+GIGPKRAIELI++H+S+E++++++D KY +PE
Sbjct: 215 EGLGLTQDEFIDLSILLGCDYCDSIKGIGPKRAIELIQKHKSLEEVIKHLDKSKYPLPEF 274
Query: 180 WLYKEARELFRHPEV 194
+ Y E RELF++P V
Sbjct: 275 FPYPEVRELFKNPNV 289
Score = 110 bits (274), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 58/112 (51%), Positives = 77/112 (68%), Gaps = 8/112 (7%)
Query: 304 ELVADVAPSSIRES-------RKICIDASMSLYQFLIAVRSE-GNQLMSVDGEPTSHLMG 355
+L+ D AP+SI+ + R I IDAS SLYQFLIA+ ++ + L + GE TSHL G
Sbjct: 8 DLIEDNAPTSIKTNILKNYFGRIIAIDASTSLYQFLIAMNADVSSALTNQLGETTSHLQG 67
Query: 356 TFYRTIRLVEHGLKPIYVFDGKPPTLKSGELNKRMEKREDAQKALAKAQEQG 407
FYRTI+L+ G+KPIYVFDG P LKSGEL KR +R++A++ L +A E G
Sbjct: 68 MFYRTIKLISRGIKPIYVFDGSAPVLKSGELAKRQARRKEAKENLKEATEVG 119
Score = 99.8 bits (247), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 41/66 (62%), Positives = 57/66 (86%)
Query: 232 FIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGWLYKEAREL 291
FIDL ILLGCDYCDSI+GIGPKRAIELI++H+S+E++++++D KY +PE + Y E REL
Sbjct: 224 FIDLSILLGCDYCDSIKGIGPKRAIELIQKHKSLEEVIKHLDKSKYPLPEFFPYPEVREL 283
Query: 292 FRHPEI 297
F++P +
Sbjct: 284 FKNPNV 289
Score = 52.4 bits (124), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 36/57 (63%)
Query: 403 AQEQGKLKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSTTTQGRLDSFFTI 459
A + +W DPD +GL K+L + F++ R+ G +KL K ++T+ Q R+DSF T+
Sbjct: 292 ADQLPPFQWKDPDVEGLNKFLVEEMGFSDVRVAQGIEKLKKFKNTSVQSRMDSFITV 348
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 34/51 (66%)
Query: 3 LKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSSTTQGRLDSFFTI 53
+W DPD +GL K+L + F++ R+ G +KL K ++++ Q R+DSF T+
Sbjct: 298 FQWKDPDVEGLNKFLVEEMGFSDVRVAQGIEKLKKFKNTSVQSRMDSFITV 348
>gi|317376190|sp|D3BN56.1|FEN1_POLPA RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|281203217|gb|EFA77418.1| XPG [Polysphondylium pallidum PN500]
Length = 388
Score = 193 bits (490), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 80/135 (59%), Positives = 114/135 (84%)
Query: 60 KAPCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVL 119
+APCEAEAQCA + K GK +AT +EDMD+LT G+ ILLR +TFSEARKLP+ E LEKVL
Sbjct: 155 QAPCEAEAQCAELCKGGKAWATGSEDMDSLTLGTTILLRRLTFSEARKLPIMEIELEKVL 214
Query: 120 EGMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEG 179
+G++L+H++F+DLCILLGCDYCD+I+GIGPK++ ++I +H++I+ +++NID K +PE
Sbjct: 215 DGLDLTHDQFVDLCILLGCDYCDTIKGIGPKKSFDMITKHKNIQTVIQNIDRTKNPIPES 274
Query: 180 WLYKEARELFRHPEV 194
+ Y+E RELF++P+V
Sbjct: 275 FPYEEVRELFKNPDV 289
Score = 117 bits (293), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 59/111 (53%), Positives = 79/111 (71%), Gaps = 8/111 (7%)
Query: 305 LVADVAPSSIRES-------RKICIDASMSLYQFLIAVRSE-GNQLMSVDGEPTSHLMGT 356
L+ + APS+I+ + R + IDAS S+YQFLIA+ +E G LM+ +GE TSHL G
Sbjct: 9 LIEENAPSAIKSNDLKSYSGRIVAIDASTSMYQFLIAINTEMGAALMNANGETTSHLQGM 68
Query: 357 FYRTIRLVEHGLKPIYVFDGKPPTLKSGELNKRMEKREDAQKALAKAQEQG 407
FYRTI+L+ G+KPIYVFDGK P LKSGEL KR +R++A++ L +A E G
Sbjct: 69 FYRTIKLMTRGIKPIYVFDGKAPVLKSGELAKRYARRKEAEQQLEEANEVG 119
Score = 95.5 bits (236), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 35/66 (53%), Positives = 56/66 (84%)
Query: 232 FIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGWLYKEAREL 291
F+DLCILLGCDYCD+I+GIGPK++ ++I +H++I+ +++NID K +PE + Y+E REL
Sbjct: 224 FVDLCILLGCDYCDTIKGIGPKKSFDMITKHKNIQTVIQNIDRTKNPIPESFPYEEVREL 283
Query: 292 FRHPEI 297
F++P++
Sbjct: 284 FKNPDV 289
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/60 (41%), Positives = 39/60 (65%)
Query: 400 LAKAQEQGKLKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSTTTQGRLDSFFTI 459
+ K Q+ ++ W +PD DGL+KYL G+ F E R++ G +KL K + T Q R+D+FF +
Sbjct: 289 VIKCQDLPEIVWKEPDVDGLIKYLVGEMGFNETRVQQGIEKLKKYKDTGVQTRIDTFFPM 348
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 42/72 (58%)
Query: 5 WSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSSTTQGRLDSFFTIRREEKRKAPCE 64
W +PD DGL+KYL G+ F E R++ G +KL K + + Q R+D+FF + + + +
Sbjct: 300 WKEPDVDGLIKYLVGEMGFNETRVQQGIEKLKKYKDTGVQTRIDTFFPMIKRPRDEDAGS 359
Query: 65 AEAQCAAMVKAG 76
A+ + + K G
Sbjct: 360 AKKKQKTVAKPG 371
>gi|430812753|emb|CCJ29874.1| unnamed protein product [Pneumocystis jirovecii]
Length = 225
Score = 192 bits (487), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 86/142 (60%), Positives = 111/142 (78%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVLE 120
APCEAEAQCAA+ KAGKVYA A+EDMD L F + ILLRH+TFSE +K P+ E +LEK L+
Sbjct: 33 APCEAEAQCAALAKAGKVYAAASEDMDILCFSTPILLRHLTFSEQKKEPITEVNLEKALK 92
Query: 121 GMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGW 180
+ + E+F+DLCILLGCDYC+ I+GIGPKRA+ELI+E++S++ + D KY +PE W
Sbjct: 93 ELNMPLEQFVDLCILLGCDYCEPIKGIGPKRALELIREYKSLDAFINFADKSKYHIPENW 152
Query: 181 LYKEARELFRHPEVADPETIEF 202
YK+ARELF P++ DPET E
Sbjct: 153 PYKDARELFLKPDITDPETFEL 174
Score = 109 bits (272), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 47/77 (61%), Positives = 60/77 (77%)
Query: 229 LYSFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGWLYKEA 288
L F+DLCILLGCDYC+ I+GIGPKRA+ELI+E++S++ + D KY +PE W YK+A
Sbjct: 98 LEQFVDLCILLGCDYCEPIKGIGPKRALELIREYKSLDAFINFADKSKYHIPENWPYKDA 157
Query: 289 RELFRHPEIADPETIEL 305
RELF P+I DPET EL
Sbjct: 158 RELFLKPDITDPETFEL 174
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/52 (44%), Positives = 33/52 (63%)
Query: 3 LKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSSTTQGRLDSFFTIR 54
LKW PD +GL+ +L +K F+E+R+ NG +L K S Q RLD +F I+
Sbjct: 174 LKWESPDAEGLLDFLVKEKGFSEERVNNGIVRLEKTLKSAQQIRLDGYFKIK 225
Score = 53.5 bits (127), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 35/56 (62%)
Query: 405 EQGKLKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSTTTQGRLDSFFTIR 460
E +LKW PD +GL+ +L +K F+E+R+ NG +L K + Q RLD +F I+
Sbjct: 170 ETFELKWESPDAEGLLDFLVKEKGFSEERVNNGIVRLEKTLKSAQQIRLDGYFKIK 225
>gi|170593271|ref|XP_001901388.1| Flap endonuclease-1 [Brugia malayi]
gi|317374878|sp|A8QCH0.1|FEN1_BRUMA RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|158591455|gb|EDP30068.1| Flap endonuclease-1, putative [Brugia malayi]
Length = 378
Score = 190 bits (482), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 87/143 (60%), Positives = 111/143 (77%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVLE 120
APCEAEAQCAA+ KAGKV+AT +EDMDALTFGS ILLR M SEA+KLPV+E +L +VL+
Sbjct: 155 APCEAEAQCAALAKAGKVFATVSEDMDALTFGSPILLRQMIASEAKKLPVKEMNLNQVLK 214
Query: 121 GMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGW 180
++ +F+DLCILLGCDY +IRGIGPK+A ELIK++ IE +LE I+ KY +P+ W
Sbjct: 215 DFGMNMGQFVDLCILLGCDYVSTIRGIGPKKAFELIKKYECIENVLETINQTKYPIPQDW 274
Query: 181 LYKEARELFRHPEVADPETIEFI 203
YKEAR LF P+V + E +E +
Sbjct: 275 QYKEARRLFLEPDVMNCENLELV 297
Score = 126 bits (316), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 63/125 (50%), Positives = 86/125 (68%), Gaps = 7/125 (5%)
Query: 304 ELVADVAPSSIRE-------SRKICIDASMSLYQFLIAVRSEGNQLMSVDGEPTSHLMGT 356
+++ D +P+SIR RK+ +DASM LYQFLIAVR +G+QL + GE TSHL+G
Sbjct: 8 KVIGDHSPNSIRLKEFKGYFGRKVAVDASMCLYQFLIAVRQDGSQLQTESGETTSHLLGM 67
Query: 357 FYRTIRLVEHGLKPIYVFDGKPPTLKSGELNKRMEKREDAQKALAKAQEQGKLKWSDPDE 416
FYRTIR++++G+KP+YVFDGKPP +K+ EL KR E+R +A+K A E G + E
Sbjct: 68 FYRTIRMIDNGIKPVYVFDGKPPQMKTSELEKRTERRTEAEKQRNDAVELGDETSVNKFE 127
Query: 417 DGLVK 421
LVK
Sbjct: 128 KRLVK 132
Score = 102 bits (253), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 44/75 (58%), Positives = 57/75 (76%)
Query: 232 FIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGWLYKEAREL 291
F+DLCILLGCDY +IRGIGPK+A ELIK++ IE +LE I+ KY +P+ W YKEAR L
Sbjct: 223 FVDLCILLGCDYVSTIRGIGPKKAFELIKKYECIENVLETINQTKYPIPQDWQYKEARRL 282
Query: 292 FRHPEIADPETIELV 306
F P++ + E +ELV
Sbjct: 283 FLEPDVMNCENLELV 297
Score = 59.3 bits (142), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 22/55 (40%), Positives = 38/55 (69%)
Query: 1 MTLKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSSTTQGRLDSFFTIRR 55
+ L W +PD +G+V++LC +K+F EDR+R ++ K R + Q R+DSFF++ +
Sbjct: 294 LELVWKEPDVEGIVQFLCVEKSFNEDRVRGSLTRMQKGRQAAQQARIDSFFSVSK 348
Score = 58.9 bits (141), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 23/57 (40%), Positives = 38/57 (66%)
Query: 405 EQGKLKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSTTTQGRLDSFFTIRR 461
E +L W +PD +G+V++LC +K+F EDR+R ++ K R Q R+DSFF++ +
Sbjct: 292 ENLELVWKEPDVEGIVQFLCVEKSFNEDRVRGSLTRMQKGRQAAQQARIDSFFSVSK 348
>gi|50556476|ref|XP_505646.1| YALI0F20042p [Yarrowia lipolytica]
gi|74632421|sp|Q6C116.1|FEN1_YARLI RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|49651516|emb|CAG78455.1| YALI0F20042p [Yarrowia lipolytica CLIB122]
Length = 389
Score = 189 bits (480), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 84/140 (60%), Positives = 113/140 (80%), Gaps = 3/140 (2%)
Query: 60 KAPCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVL 119
+APCEAEAQCA + +AGKVYA A+EDMD L FGS +LLRH+TFSEA+K+P+ E + K+L
Sbjct: 166 EAPCEAEAQCAKLAEAGKVYAAASEDMDTLCFGSPVLLRHLTFSEAKKMPISEINFAKIL 225
Query: 120 EGMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENID---TKKYTV 176
EG+E++H +FIDLCILLGCDY D+IRG+GP+ A++L+KEH S+EKI+E+I+ + K V
Sbjct: 226 EGLEMTHAQFIDLCILLGCDYADTIRGVGPQTALKLMKEHGSLEKIVEHIEKNPSGKLKV 285
Query: 177 PEGWLYKEARELFRHPEVAD 196
PE W Y+E R L + P+V D
Sbjct: 286 PENWPYQEVRALLQAPDVLD 305
Score = 127 bits (318), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 61/104 (58%), Positives = 82/104 (78%), Gaps = 8/104 (7%)
Query: 311 PSSIRES-------RKICIDASMSLYQFLIAVR-SEGNQLMSVDGEPTSHLMGTFYRTIR 362
P+++R S RK+ IDASMSLYQF+IAVR ++G QL + +GE TSHLMG FYRT+R
Sbjct: 15 PAALRSSEIKNFGGRKVAIDASMSLYQFVIAVRQADGQQLTNENGETTSHLMGMFYRTLR 74
Query: 363 LVEHGLKPIYVFDGKPPTLKSGELNKRMEKREDAQKALAKAQEQ 406
+V++G+KP+YVFDGKPP LKSGEL KR E+RE+A K + + ++Q
Sbjct: 75 MVDNGIKPVYVFDGKPPVLKSGELAKRKERREEALKKIEELKQQ 118
Score = 91.7 bits (226), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 41/79 (51%), Positives = 60/79 (75%), Gaps = 4/79 (5%)
Query: 225 AIELLYS-FIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENID---TKKYTVP 280
+E+ ++ FIDLCILLGCDY D+IRG+GP+ A++L+KEH S+EKI+E+I+ + K VP
Sbjct: 227 GLEMTHAQFIDLCILLGCDYADTIRGVGPQTALKLMKEHGSLEKIVEHIEKNPSGKLKVP 286
Query: 281 EGWLYKEARELFRHPEIAD 299
E W Y+E R L + P++ D
Sbjct: 287 ENWPYQEVRALLQAPDVLD 305
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/62 (48%), Positives = 41/62 (66%), Gaps = 3/62 (4%)
Query: 3 LKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSSTTQGRLDSFFTIRRE---EKR 59
+KW++PD +GLV +L DK F+EDR+R GA +L+K Q RLD FF + + EKR
Sbjct: 311 IKWNNPDVEGLVDFLVRDKGFSEDRVRAGAARLMKQVKVKPQARLDGFFKVMPKEGGEKR 370
Query: 60 KA 61
KA
Sbjct: 371 KA 372
Score = 63.2 bits (152), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 27/60 (45%), Positives = 39/60 (65%)
Query: 409 LKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSTTTQGRLDSFFTIRREEKRKSR 468
+KW++PD +GLV +L DK F+EDR+R GA +L+K Q RLD FF + +E + R
Sbjct: 311 IKWNNPDVEGLVDFLVRDKGFSEDRVRAGAARLMKQVKVKPQARLDGFFKVMPKEGGEKR 370
>gi|453084814|gb|EMF12858.1| flap endonuclease [Mycosphaerella populorum SO2202]
Length = 393
Score = 188 bits (477), Expect = 7e-45, Method: Compositional matrix adjust.
Identities = 84/135 (62%), Positives = 110/135 (81%), Gaps = 1/135 (0%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVLE 120
AP EAEAQCA + +AGKVYA A+EDMD LTF + +LLRH+TFSE RK P+QE HL++VLE
Sbjct: 155 APTEAEAQCAVLARAGKVYAAASEDMDTLTFNAPVLLRHLTFSEQRKEPIQEIHLDRVLE 214
Query: 121 GMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENID-TKKYTVPEG 179
G++ +FID+CILLGCDY D ++GIGPK A LIKEH+++EK++E+I+ T KYT+PE
Sbjct: 215 GLDFDLNQFIDMCILLGCDYLDPVKGIGPKNAHALIKEHKTLEKVVEHIEKTGKYTLPED 274
Query: 180 WLYKEARELFRHPEV 194
W Y+EAR LF+ P+V
Sbjct: 275 WPYQEARLLFQEPDV 289
Score = 128 bits (322), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 61/104 (58%), Positives = 78/104 (75%), Gaps = 7/104 (6%)
Query: 311 PSSIRES-------RKICIDASMSLYQFLIAVRSEGNQLMSVDGEPTSHLMGTFYRTIRL 363
P +++E RK+ IDASMSLY FLIAVRS G QLMS GE TSHLMG FYRT+R+
Sbjct: 15 PDAVKEGEIKTQFGRKVAIDASMSLYSFLIAVRSGGEQLMSDTGETTSHLMGMFYRTLRI 74
Query: 364 VEHGLKPIYVFDGKPPTLKSGELNKRMEKREDAQKALAKAQEQG 407
V++G+KP+YVFDG PP LKSGEL KR +++ +AQ+ +A+E G
Sbjct: 75 VDNGIKPLYVFDGAPPKLKSGELAKRFQRKSEAQEQHEEAKETG 118
Score = 97.1 bits (240), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 42/70 (60%), Positives = 57/70 (81%), Gaps = 1/70 (1%)
Query: 229 LYSFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENID-TKKYTVPEGWLYKE 287
L FID+CILLGCDY D ++GIGPK A LIKEH+++EK++E+I+ T KYT+PE W Y+E
Sbjct: 220 LNQFIDMCILLGCDYLDPVKGIGPKNAHALIKEHKTLEKVVEHIEKTGKYTLPEDWPYQE 279
Query: 288 ARELFRHPEI 297
AR LF+ P++
Sbjct: 280 ARLLFQEPDV 289
Score = 57.0 bits (136), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 24/52 (46%), Positives = 34/52 (65%)
Query: 3 LKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSSTTQGRLDSFFTIR 54
KW PD +GLVK+L +K F+EDR+R+ A +L K S Q RL+ FF ++
Sbjct: 299 FKWEAPDVEGLVKFLVEEKGFSEDRVRSAATRLQKNLKSGQQSRLEGFFKVK 350
Score = 55.8 bits (133), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 23/52 (44%), Positives = 34/52 (65%)
Query: 409 LKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSTTTQGRLDSFFTIR 460
KW PD +GLVK+L +K F+EDR+R+ A +L K + Q RL+ FF ++
Sbjct: 299 FKWEAPDVEGLVKFLVEEKGFSEDRVRSAATRLQKNLKSGQQSRLEGFFKVK 350
>gi|440795563|gb|ELR16683.1| hypothetical protein ACA1_089310 [Acanthamoeba castellanii str.
Neff]
Length = 343
Score = 187 bits (475), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 82/139 (58%), Positives = 111/139 (79%)
Query: 64 EAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVLEGME 123
EAEAQCA + +AGKV+A +EDMDALTFG+ +LLRH+TFSEARKLP+ E L KVLEG+
Sbjct: 141 EAEAQCAELCRAGKVFAVGSEDMDALTFGAPVLLRHLTFSEARKLPIVEIELPKVLEGLG 200
Query: 124 LSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGWLYK 183
L+ E+FIDLCIL GCDYCD+IRG+GPKRA+ LIK+H S+E++++N+D K +P+ + ++
Sbjct: 201 LTMEQFIDLCILAGCDYCDTIRGVGPKRALALIKQHGSVEQVIKNLDKAKNPLPDQFPFE 260
Query: 184 EARELFRHPEVADPETIEF 202
RELF+HP V + +E
Sbjct: 261 ATRELFKHPNVIPGDEVEL 279
Score = 98.6 bits (244), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 39/74 (52%), Positives = 58/74 (78%)
Query: 232 FIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGWLYKEAREL 291
FIDLCIL GCDYCD+IRG+GPKRA+ LIK+H S+E++++N+D K +P+ + ++ REL
Sbjct: 206 FIDLCILAGCDYCDTIRGVGPKRALALIKQHGSVEQVIKNLDKAKNPLPDQFPFEATREL 265
Query: 292 FRHPEIADPETIEL 305
F+HP + + +EL
Sbjct: 266 FKHPNVIPGDEVEL 279
Score = 70.1 bits (170), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 35/81 (43%), Positives = 55/81 (67%), Gaps = 8/81 (9%)
Query: 303 IELVADVAPSSIRES-------RKICIDASMSLYQFLIAVRS-EGNQLMSVDGEPTSHLM 354
++L+AD P +++E+ RK+ +DAS++LY FLIA+ G+ L + G+ TS+LM
Sbjct: 7 MQLIADACPQALKETGADSYFGRKVALDASLALYSFLIALSPLSGSFLTNPSGDDTSYLM 66
Query: 355 GTFYRTIRLVEHGLKPIYVFD 375
G + RT+RLV G+KP +VFD
Sbjct: 67 GLWSRTLRLVACGIKPAFVFD 87
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/52 (48%), Positives = 34/52 (65%), Gaps = 1/52 (1%)
Query: 408 KLKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARST-TTQGRLDSFFT 458
+L+W PDE+GL++YL +K F E+R+R G L R QGR+DSFFT
Sbjct: 278 ELQWGSPDEEGLLEYLVAEKGFNEERVRKGIATLKAGRKPQPVQGRIDSFFT 329
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/51 (49%), Positives = 33/51 (64%), Gaps = 1/51 (1%)
Query: 3 LKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSS-TTQGRLDSFFT 52
L+W PDE+GL++YL +K F E+R+R G L R QGR+DSFFT
Sbjct: 279 LQWGSPDEEGLLEYLVAEKGFNEERVRKGIATLKAGRKPQPVQGRIDSFFT 329
>gi|213404252|ref|XP_002172898.1| DNA-repair protein rad2 [Schizosaccharomyces japonicus yFS275]
gi|317376192|sp|B6JYI7.1|FEN1_SCHJY RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|212000945|gb|EEB06605.1| DNA-repair protein rad2 [Schizosaccharomyces japonicus yFS275]
Length = 377
Score = 185 bits (469), Expect = 6e-44, Method: Compositional matrix adjust.
Identities = 80/143 (55%), Positives = 109/143 (76%)
Query: 60 KAPCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVL 119
APCEAEAQCAA+ +AGKVYA A+EDMD + F + ILLRH+TFSE RK P+ E+ EK +
Sbjct: 155 NAPCEAEAQCAALARAGKVYAAASEDMDTMCFQAPILLRHLTFSEQRKEPISEYSFEKTI 214
Query: 120 EGMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEG 179
EG+ + E+F+DLCILLGCDYCD IRG+GP RA+ELI++H +++ +++ D KK+ +PE
Sbjct: 215 EGLNFTIEQFVDLCILLGCDYCDPIRGVGPARAVELIRQHGNLDNFVKDADKKKFPIPED 274
Query: 180 WLYKEARELFRHPEVADPETIEF 202
W Y++AR LF EV + + IE
Sbjct: 275 WPYQDARRLFLEAEVQEAKDIEL 297
Score = 121 bits (304), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 60/99 (60%), Positives = 76/99 (76%), Gaps = 8/99 (8%)
Query: 304 ELVADVAPSSIRES-------RKICIDASMSLYQFLIAVRS-EGNQLMSVDGEPTSHLMG 355
+++AD PS++R + RK+ IDASMSLYQFLI VR +G QLM+ GE TSHLMG
Sbjct: 8 QVIADNCPSAVRHNDIKNYFGRKVAIDASMSLYQFLIQVRGQDGQQLMNDQGETTSHLMG 67
Query: 356 TFYRTIRLVEHGLKPIYVFDGKPPTLKSGELNKRMEKRE 394
FYRT+R+V++GLKP YVFDGKPPTLKSGEL KR +++
Sbjct: 68 MFYRTLRMVDNGLKPCYVFDGKPPTLKSGELAKRASRQQ 106
Score = 98.2 bits (243), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 39/74 (52%), Positives = 57/74 (77%)
Query: 232 FIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGWLYKEAREL 291
F+DLCILLGCDYCD IRG+GP RA+ELI++H +++ +++ D KK+ +PE W Y++AR L
Sbjct: 224 FVDLCILLGCDYCDPIRGVGPARAVELIRQHGNLDNFVKDADKKKFPIPEDWPYQDARRL 283
Query: 292 FRHPEIADPETIEL 305
F E+ + + IEL
Sbjct: 284 FLEAEVQEAKDIEL 297
Score = 66.6 bits (161), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 32/70 (45%), Positives = 46/70 (65%), Gaps = 4/70 (5%)
Query: 394 EDAQKALAKAQEQG----KLKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSTTT 449
+DA++ +A+ Q +LKW PDE G++K+L +K F EDR+R G +L+KA T
Sbjct: 278 QDARRLFLEAEVQEAKDIELKWRAPDEQGIIKFLVEEKGFNEDRVRVGINRLVKASKTIP 337
Query: 450 QGRLDSFFTI 459
QGRLDSFF +
Sbjct: 338 QGRLDSFFKV 347
Score = 64.7 bits (156), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 27/53 (50%), Positives = 37/53 (69%)
Query: 1 MTLKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSSTTQGRLDSFFTI 53
+ LKW PDE G++K+L +K F EDR+R G +L+KA + QGRLDSFF +
Sbjct: 295 IELKWRAPDEQGIIKFLVEEKGFNEDRVRVGINRLVKASKTIPQGRLDSFFKV 347
>gi|452981413|gb|EME81173.1| hypothetical protein MYCFIDRAFT_189405 [Pseudocercospora fijiensis
CIRAD86]
Length = 393
Score = 184 bits (466), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 82/135 (60%), Positives = 108/135 (80%), Gaps = 1/135 (0%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVLE 120
AP EAEAQCA + +AGKVYA A+EDMD LTF S +LLR +TFSE RK P+QE HL++VLE
Sbjct: 155 APTEAEAQCAVIARAGKVYAAASEDMDTLTFASPVLLRKLTFSEQRKEPIQEIHLDRVLE 214
Query: 121 GMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENID-TKKYTVPEG 179
G+++ +FIDLCILLGCDY D ++GIGPK A+ LIKEH+++E ++ I+ T KYT+PE
Sbjct: 215 GLDMDQNQFIDLCILLGCDYLDPVKGIGPKNALALIKEHKNLEGVVAMIEKTGKYTLPED 274
Query: 180 WLYKEARELFRHPEV 194
W Y++AR LF+ P+V
Sbjct: 275 WPYQDARVLFQEPDV 289
Score = 129 bits (323), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 61/104 (58%), Positives = 78/104 (75%), Gaps = 7/104 (6%)
Query: 311 PSSIRES-------RKICIDASMSLYQFLIAVRSEGNQLMSVDGEPTSHLMGTFYRTIRL 363
P +I+E RK+ IDASMSLY FL+AVRS G QLM+ GE TSHLMG FYRT+R+
Sbjct: 15 PDAIKEGEIKNQFGRKVAIDASMSLYSFLVAVRSGGEQLMNESGETTSHLMGMFYRTLRI 74
Query: 364 VEHGLKPIYVFDGKPPTLKSGELNKRMEKREDAQKALAKAQEQG 407
V++G+KP+YVFDG PP LKSGEL KR +++ +AQ+A A+E G
Sbjct: 75 VDNGIKPVYVFDGAPPKLKSGELAKRFQRKSEAQEAHEDAKEIG 118
Score = 92.4 bits (228), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 48/111 (43%), Positives = 70/111 (63%), Gaps = 9/111 (8%)
Query: 196 DPETIEFIDLCILLGCDYCD----SIRGIGPKRAIELL----YSFIDLCILLGCDYCDSI 247
D +T+ F +L + + I+ I R +E L FIDLCILLGCDY D +
Sbjct: 179 DMDTLTFASPVLLRKLTFSEQRKEPIQEIHLDRVLEGLDMDQNQFIDLCILLGCDYLDPV 238
Query: 248 RGIGPKRAIELIKEHRSIEKILENID-TKKYTVPEGWLYKEARELFRHPEI 297
+GIGPK A+ LIKEH+++E ++ I+ T KYT+PE W Y++AR LF+ P++
Sbjct: 239 KGIGPKNALALIKEHKNLEGVVAMIEKTGKYTLPEDWPYQDARVLFQEPDV 289
Score = 62.8 bits (151), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 29/60 (48%), Positives = 41/60 (68%), Gaps = 1/60 (1%)
Query: 3 LKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSSTTQGRLDSFF-TIRREEKRKA 61
KW +PD DGLVK+L +K F+EDR+R+GA +L K S+ Q RL+ FF + + E+ KA
Sbjct: 299 FKWENPDVDGLVKFLVEEKGFSEDRVRSGAARLQKNLKSSQQSRLEGFFKAVPKTEEEKA 358
Score = 60.8 bits (146), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/49 (51%), Positives = 35/49 (71%)
Query: 409 LKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSTTTQGRLDSFF 457
KW +PD DGLVK+L +K F+EDR+R+GA +L K ++ Q RL+ FF
Sbjct: 299 FKWENPDVDGLVKFLVEEKGFSEDRVRSGAARLQKNLKSSQQSRLEGFF 347
>gi|407916553|gb|EKG09919.1| DNA repair protein [Macrophomina phaseolina MS6]
Length = 392
Score = 183 bits (465), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 81/135 (60%), Positives = 108/135 (80%), Gaps = 1/135 (0%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVLE 120
AP EAEAQCA + +AGKVYA A+EDMD LTF S +LLRH+TFSE RK P+QE HL+KVLE
Sbjct: 155 APTEAEAQCAVLARAGKVYAAASEDMDTLTFNSPVLLRHLTFSEQRKEPIQEIHLDKVLE 214
Query: 121 GMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENI-DTKKYTVPEG 179
G+E+ E+FIDLCILLGCDY D I+G+GP A++L++EH+++E +++ + KYT+PE
Sbjct: 215 GLEMEREQFIDLCILLGCDYLDPIKGVGPSTALKLVREHKNLEGVVKFMQGNSKYTIPED 274
Query: 180 WLYKEARELFRHPEV 194
W Y++AR LF P+V
Sbjct: 275 WPYQDARLLFLEPDV 289
Score = 129 bits (323), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 58/91 (63%), Positives = 75/91 (82%)
Query: 317 SRKICIDASMSLYQFLIAVRSEGNQLMSVDGEPTSHLMGTFYRTIRLVEHGLKPIYVFDG 376
RK+ IDASMS+Y FLIAVRS+G QLMS GE TSHLMG FYRT+R+V++G+KP++VFDG
Sbjct: 28 GRKVAIDASMSIYSFLIAVRSDGQQLMSDTGETTSHLMGMFYRTLRMVDNGIKPLFVFDG 87
Query: 377 KPPTLKSGELNKRMEKREDAQKALAKAQEQG 407
PP LKSGEL KR +++ +AQ+A +A+E G
Sbjct: 88 APPKLKSGELAKRFQRKSEAQEAHEEAKETG 118
Score = 84.7 bits (208), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 34/67 (50%), Positives = 52/67 (77%), Gaps = 1/67 (1%)
Query: 232 FIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENI-DTKKYTVPEGWLYKEARE 290
FIDLCILLGCDY D I+G+GP A++L++EH+++E +++ + KYT+PE W Y++AR
Sbjct: 223 FIDLCILLGCDYLDPIKGVGPSTALKLVREHKNLEGVVKFMQGNSKYTIPEDWPYQDARL 282
Query: 291 LFRHPEI 297
LF P++
Sbjct: 283 LFLEPDV 289
Score = 58.5 bits (140), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 29/67 (43%), Positives = 38/67 (56%), Gaps = 7/67 (10%)
Query: 3 LKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSSTTQGRLDSFFTIRREEKRKAP 62
KW PD DGL+K+L +K F EDR+R+GA++L K S Q RL+ FF + P
Sbjct: 299 FKWDAPDVDGLIKFLVEEKGFNEDRVRSGAQRLQKNIKSAQQSRLEGFF-------KPVP 351
Query: 63 CEAEAQC 69
AE Q
Sbjct: 352 KTAEEQA 358
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/50 (48%), Positives = 34/50 (68%)
Query: 408 KLKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSTTTQGRLDSFF 457
+ KW PD DGL+K+L +K F EDR+R+GA++L K + Q RL+ FF
Sbjct: 298 EFKWDAPDVDGLIKFLVEEKGFNEDRVRSGAQRLQKNIKSAQQSRLEGFF 347
>gi|345569735|gb|EGX52564.1| hypothetical protein AOL_s00007g552 [Arthrobotrys oligospora ATCC
24927]
Length = 390
Score = 183 bits (464), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 81/142 (57%), Positives = 113/142 (79%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVLE 120
APCEAEAQCA + K+GKVYA A+EDMD L F + ILLRH+TFSE RK P+QE HL++V+
Sbjct: 155 APCEAEAQCAILAKSGKVYAAASEDMDTLCFETPILLRHLTFSEQRKQPIQEIHLDRVMA 214
Query: 121 GMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGW 180
G++++ E+FIDLCILLGCDYCD+I +GP A++LI++++SIE ++EN+D KY VP+ +
Sbjct: 215 GLDMTREQFIDLCILLGCDYCDTIPKVGPTTALKLIRQYKSIEGVIENLDKDKYKVPDYF 274
Query: 181 LYKEARELFRHPEVADPETIEF 202
Y++AREL +PEV + +F
Sbjct: 275 PYQDARELLMNPEVVPADECDF 296
Score = 132 bits (331), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 63/111 (56%), Positives = 84/111 (75%), Gaps = 7/111 (6%)
Query: 304 ELVADVAPSSIRES-------RKICIDASMSLYQFLIAVRSEGNQLMSVDGEPTSHLMGT 356
+++++ AP +I+ RK+ IDASMS+Y FLIAVRSEG L S GE TSHLMG
Sbjct: 8 QVISEAAPDAIKNGEIKNHFGRKVAIDASMSIYSFLIAVRSEGQVLTSETGETTSHLMGM 67
Query: 357 FYRTIRLVEHGLKPIYVFDGKPPTLKSGELNKRMEKREDAQKALAKAQEQG 407
FYRT+R+V++G+KP+YVFDGKPPTLKSGEL KR ++ +AQ+A +A+E G
Sbjct: 68 FYRTLRMVDNGIKPLYVFDGKPPTLKSGELAKRTARKFEAQEAHEEAKEVG 118
Score = 90.1 bits (222), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 37/67 (55%), Positives = 54/67 (80%)
Query: 232 FIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGWLYKEAREL 291
FIDLCILLGCDYCD+I +GP A++LI++++SIE ++EN+D KY VP+ + Y++AREL
Sbjct: 223 FIDLCILLGCDYCDTIPKVGPTTALKLIRQYKSIEGVIENLDKDKYKVPDYFPYQDAREL 282
Query: 292 FRHPEIA 298
+PE+
Sbjct: 283 LMNPEVV 289
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 25/51 (49%), Positives = 34/51 (66%)
Query: 409 LKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSTTTQGRLDSFFTI 459
KW PD +GLV +L G K F EDR+R+GA +L K ++T Q RL+ FF +
Sbjct: 296 FKWDAPDTEGLVDFLVGGKGFNEDRVRSGAARLSKNQTTAQQSRLEGFFKV 346
Score = 60.1 bits (144), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 24/51 (47%), Positives = 34/51 (66%)
Query: 3 LKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSSTTQGRLDSFFTI 53
KW PD +GLV +L G K F EDR+R+GA +L K +++ Q RL+ FF +
Sbjct: 296 FKWDAPDTEGLVDFLVGGKGFNEDRVRSGAARLSKNQTTAQQSRLEGFFKV 346
>gi|440797493|gb|ELR18579.1| XPG Iregion domain containing protein [Acanthamoeba castellanii
str. Neff]
Length = 434
Score = 182 bits (463), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 82/142 (57%), Positives = 112/142 (78%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVLE 120
AP EAEAQCA + +AGKV+AT +EDMD+LTF + ILLRH+ ++EA+K P+ E LEKVL+
Sbjct: 120 APTEAEAQCAELCRAGKVFATGSEDMDSLTFATPILLRHLNYAEAQKKPIIEIDLEKVLK 179
Query: 121 GMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGW 180
G ++ E+FIDLCIL GCDYCD+IRGIGPKRA+E+I+++ SIE L+N+D KY +PE +
Sbjct: 180 GFGMTMEQFIDLCILAGCDYCDTIRGIGPKRALEMIRKYGSIEGTLKNLDKAKYPLPEPF 239
Query: 181 LYKEARELFRHPEVADPETIEF 202
Y+ RELF+HP+V + +E
Sbjct: 240 PYEAVRELFKHPDVTPGDQVEL 261
Score = 102 bits (254), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 51/118 (43%), Positives = 74/118 (62%), Gaps = 11/118 (9%)
Query: 188 LFRHPEVADPETIEFIDLCILLGCDYCDSIRGIGPKRAIELLYSFIDLCILLGCDYCDSI 247
L RH A+ + I++ D ++G G + FIDLCIL GCDYCD+I
Sbjct: 155 LLRHLNYAEAQKKPIIEI------DLEKVLKGFG-----MTMEQFIDLCILAGCDYCDTI 203
Query: 248 RGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGWLYKEARELFRHPEIADPETIEL 305
RGIGPKRA+E+I+++ SIE L+N+D KY +PE + Y+ RELF+HP++ + +EL
Sbjct: 204 RGIGPKRALEMIRKYGSIEGTLKNLDKAKYPLPEPFPYEAVRELFKHPDVTPGDQVEL 261
Score = 90.5 bits (223), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 42/83 (50%), Positives = 60/83 (72%), Gaps = 1/83 (1%)
Query: 326 MSLYQFLIAVRSE-GNQLMSVDGEPTSHLMGTFYRTIRLVEHGLKPIYVFDGKPPTLKSG 384
M+LY FLI++R + G L GE TSHLMG + RT+RL+ +G+KP+YVFDG+PP +K
Sbjct: 1 MALYAFLISIRPDTGIWLTDEAGETTSHLMGIWSRTLRLIAYGIKPVYVFDGRPPVMKGT 60
Query: 385 ELNKRMEKREDAQKALAKAQEQG 407
EL KR K+++A++ L +A E G
Sbjct: 61 ELKKRSAKKKEAEQGLEEATELG 83
Score = 65.5 bits (158), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 28/50 (56%), Positives = 36/50 (72%)
Query: 3 LKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSSTTQGRLDSFFT 52
LKW +PDE+GL++YL +K F E+R+R G +KL KAR S QGRLD F
Sbjct: 261 LKWGEPDEEGLLQYLVKEKQFNEERVRKGIEKLKKARGSAVQGRLDGFVA 310
Score = 65.1 bits (157), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 28/54 (51%), Positives = 39/54 (72%)
Query: 405 EQGKLKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSTTTQGRLDSFFT 458
+Q +LKW +PDE+GL++YL +K F E+R+R G +KL KAR + QGRLD F
Sbjct: 257 DQVELKWGEPDEEGLLQYLVKEKQFNEERVRKGIEKLKKARGSAVQGRLDGFVA 310
>gi|452840124|gb|EME42062.1| hypothetical protein DOTSEDRAFT_174868 [Dothistroma septosporum
NZE10]
Length = 393
Score = 182 bits (463), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 82/135 (60%), Positives = 107/135 (79%), Gaps = 1/135 (0%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVLE 120
AP EAEAQCA + +AGKVYA A+EDMD LTF S +LLRH+TFSE RK P+QE L++VLE
Sbjct: 155 APTEAEAQCAVLARAGKVYAAASEDMDTLTFDSPVLLRHLTFSEQRKEPIQEIFLDRVLE 214
Query: 121 GMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDT-KKYTVPEG 179
G+E+ ++FIDLCILLGCDY D ++GIGPK A+ELIK+H+++E ++E I KYT+PE
Sbjct: 215 GLEMDQKQFIDLCILLGCDYLDPVKGIGPKVALELIKKHKTLENVVEEIKKGSKYTLPED 274
Query: 180 WLYKEARELFRHPEV 194
W + +AR LF P+V
Sbjct: 275 WPFADARALFLEPDV 289
Score = 130 bits (327), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 62/111 (55%), Positives = 81/111 (72%), Gaps = 7/111 (6%)
Query: 304 ELVADVAPSSIRES-------RKICIDASMSLYQFLIAVRSEGNQLMSVDGEPTSHLMGT 356
+++ D P +I+E RK+ IDASMSLY FL+AVRS G QLMS GE TSHLMG
Sbjct: 8 QVIKDNCPDAIKEGEIKNQFGRKVAIDASMSLYSFLVAVRSNGEQLMSDTGETTSHLMGM 67
Query: 357 FYRTIRLVEHGLKPIYVFDGKPPTLKSGELNKRMEKREDAQKALAKAQEQG 407
FYRT+R+V++G+KP+YVFDG PP LKSGEL KR +++ +AQ +A+E G
Sbjct: 68 FYRTLRIVDNGIKPLYVFDGAPPKLKSGELAKRFQRKSEAQADHEEAKETG 118
Score = 90.5 bits (223), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 38/67 (56%), Positives = 52/67 (77%), Gaps = 1/67 (1%)
Query: 232 FIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDT-KKYTVPEGWLYKEARE 290
FIDLCILLGCDY D ++GIGPK A+ELIK+H+++E ++E I KYT+PE W + +AR
Sbjct: 223 FIDLCILLGCDYLDPVKGIGPKVALELIKKHKTLENVVEEIKKGSKYTLPEDWPFADARA 282
Query: 291 LFRHPEI 297
LF P++
Sbjct: 283 LFLEPDV 289
Score = 59.3 bits (142), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 25/49 (51%), Positives = 34/49 (69%)
Query: 3 LKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSSTTQGRLDSFF 51
KW PD +GLVK+L +K F+EDR+R+GA +L K S+ Q RL+ FF
Sbjct: 299 FKWESPDVEGLVKFLVEEKGFSEDRVRSGAARLSKNMKSSQQARLEGFF 347
Score = 58.5 bits (140), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 24/49 (48%), Positives = 34/49 (69%)
Query: 409 LKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSTTTQGRLDSFF 457
KW PD +GLVK+L +K F+EDR+R+GA +L K ++ Q RL+ FF
Sbjct: 299 FKWESPDVEGLVKFLVEEKGFSEDRVRSGAARLSKNMKSSQQARLEGFF 347
>gi|449299844|gb|EMC95857.1| hypothetical protein BAUCODRAFT_109503 [Baudoinia compniacensis
UAMH 10762]
Length = 393
Score = 182 bits (463), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 81/135 (60%), Positives = 107/135 (79%), Gaps = 1/135 (0%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVLE 120
AP EAEAQCA + +AGKVYA A+EDMD LTF S +LLRH+TFSE RK P+QE HL+ VL
Sbjct: 155 APTEAEAQCAVLARAGKVYAAASEDMDTLTFNSPVLLRHLTFSEQRKEPIQEIHLDAVLS 214
Query: 121 GMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENID-TKKYTVPEG 179
G+E+ +FIDLCILLGCDY D ++GIGPK A+ LI+EH+++EK++E++ + KYT P+
Sbjct: 215 GLEMDLPQFIDLCILLGCDYVDPVKGIGPKVALALIREHKTLEKVVESVTKSGKYTFPDD 274
Query: 180 WLYKEARELFRHPEV 194
W Y++AR LF P+V
Sbjct: 275 WPYQDARLLFLEPDV 289
Score = 135 bits (339), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 63/111 (56%), Positives = 85/111 (76%), Gaps = 7/111 (6%)
Query: 304 ELVADVAPSSIRES-------RKICIDASMSLYQFLIAVRSEGNQLMSVDGEPTSHLMGT 356
+++ D AP +I+E RK+ IDASMSLY FL+AVRS+G QLMS GE TSHLMG
Sbjct: 8 QVIKDNAPDAIKEGEIKNQFGRKVAIDASMSLYSFLVAVRSDGQQLMSDTGETTSHLMGL 67
Query: 357 FYRTIRLVEHGLKPIYVFDGKPPTLKSGELNKRMEKREDAQKALAKAQEQG 407
FYRT+R+V++G+KP+YVFDG PP LKSGEL KR +++ +AQ++ +A+E G
Sbjct: 68 FYRTLRIVDNGIKPLYVFDGAPPKLKSGELAKRFQRKSEAQESHEEAKETG 118
Score = 90.9 bits (224), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 38/70 (54%), Positives = 55/70 (78%), Gaps = 1/70 (1%)
Query: 229 LYSFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENID-TKKYTVPEGWLYKE 287
L FIDLCILLGCDY D ++GIGPK A+ LI+EH+++EK++E++ + KYT P+ W Y++
Sbjct: 220 LPQFIDLCILLGCDYVDPVKGIGPKVALALIREHKTLEKVVESVTKSGKYTFPDDWPYQD 279
Query: 288 ARELFRHPEI 297
AR LF P++
Sbjct: 280 ARLLFLEPDV 289
Score = 62.4 bits (150), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 29/59 (49%), Positives = 41/59 (69%), Gaps = 2/59 (3%)
Query: 5 WSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSSTTQGRLDSFFTIRR--EEKRKA 61
W+ PD DGLVK+L +K F EDR+R+GA +L K S+ Q RL+ FF ++ EE+R+A
Sbjct: 301 WNGPDVDGLVKFLVEEKGFNEDRVRSGAARLQKNLKSSQQARLEGFFKVKEKTEEERQA 359
Score = 60.1 bits (144), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/59 (45%), Positives = 41/59 (69%), Gaps = 2/59 (3%)
Query: 411 WSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSTTTQGRLDSFFTIRR--EEKRKS 467
W+ PD DGLVK+L +K F EDR+R+GA +L K ++ Q RL+ FF ++ EE+R++
Sbjct: 301 WNGPDVDGLVKFLVEEKGFNEDRVRSGAARLQKNLKSSQQARLEGFFKVKEKTEEERQA 359
>gi|400598682|gb|EJP66391.1| DNA-repair protein rad2 [Beauveria bassiana ARSEF 2860]
Length = 394
Score = 182 bits (462), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 84/137 (61%), Positives = 108/137 (78%), Gaps = 3/137 (2%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVLE 120
AP EAEAQCA + KAGKVYA A+EDMD L F S ILLRH+TFSE RK P+QE HL+KVLE
Sbjct: 155 APTEAEAQCAVLAKAGKVYAAASEDMDTLCFDSPILLRHLTFSEQRKEPIQEIHLDKVLE 214
Query: 121 GMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDT---KKYTVP 177
G+ + ++F+DLCILLGCDY D I +GP A++LI+EH S+EK++E +++ KKYT+P
Sbjct: 215 GLNMKRKQFVDLCILLGCDYLDPIPKVGPTTALKLIREHGSLEKVVEAMESDSKKKYTIP 274
Query: 178 EGWLYKEARELFRHPEV 194
E W YK+AR+LF P+V
Sbjct: 275 EDWPYKDARDLFFEPDV 291
Score = 133 bits (335), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 62/112 (55%), Positives = 85/112 (75%), Gaps = 7/112 (6%)
Query: 303 IELVADVAPSSIRES-------RKICIDASMSLYQFLIAVRSEGNQLMSVDGEPTSHLMG 355
+++ + AP +I+E RK+ IDASMS+Y FLIAVRS+G QLM+ GE TSHLMG
Sbjct: 7 FQIIKEEAPDAIKEGEIKNHFGRKVAIDASMSIYSFLIAVRSDGQQLMNDTGETTSHLMG 66
Query: 356 TFYRTIRLVEHGLKPIYVFDGKPPTLKSGELNKRMEKREDAQKALAKAQEQG 407
FYRT+R+V++G+KP+YVFDG PP LKSGEL KR ++++ AQ+ L +A+E G
Sbjct: 67 MFYRTLRMVDNGIKPLYVFDGAPPKLKSGELAKRFQRKQTAQEGLEEAKETG 118
Score = 89.4 bits (220), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 38/69 (55%), Positives = 54/69 (78%), Gaps = 3/69 (4%)
Query: 232 FIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDT---KKYTVPEGWLYKEA 288
F+DLCILLGCDY D I +GP A++LI+EH S+EK++E +++ KKYT+PE W YK+A
Sbjct: 223 FVDLCILLGCDYLDPIPKVGPTTALKLIREHGSLEKVVEAMESDSKKKYTIPEDWPYKDA 282
Query: 289 RELFRHPEI 297
R+LF P++
Sbjct: 283 RDLFFEPDV 291
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 24/51 (47%), Positives = 35/51 (68%)
Query: 3 LKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSSTTQGRLDSFFTI 53
+KW PD DGLV++L +K F+EDR+R+G +L K S+ Q RL+ FF +
Sbjct: 301 VKWDKPDMDGLVQFLVAEKGFSEDRVRSGGARLEKNLKSSQQARLEGFFKV 351
Score = 58.9 bits (141), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 23/51 (45%), Positives = 35/51 (68%)
Query: 409 LKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSTTTQGRLDSFFTI 459
+KW PD DGLV++L +K F+EDR+R+G +L K ++ Q RL+ FF +
Sbjct: 301 VKWDKPDMDGLVQFLVAEKGFSEDRVRSGGARLEKNLKSSQQARLEGFFKV 351
>gi|340518918|gb|EGR49158.1| Rad27p/FEN-1 endonuclease-like protein [Trichoderma reesei QM6a]
Length = 395
Score = 182 bits (461), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 84/137 (61%), Positives = 107/137 (78%), Gaps = 3/137 (2%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVLE 120
AP EAEAQCA + +AGKVYA A+EDMD L F + ILLRH+TFSE RK P+QE L+KVLE
Sbjct: 155 APTEAEAQCAVLARAGKVYAAASEDMDTLCFNTPILLRHLTFSEQRKEPIQEIRLDKVLE 214
Query: 121 GMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENID---TKKYTVP 177
G+ + E+F+DLCILLGCDY D I +GP A++LI+EH ++EK++E I+ KKYT+P
Sbjct: 215 GLNMEREQFVDLCILLGCDYLDPIPKVGPTTALKLIREHGTLEKVVEAIEKDPKKKYTLP 274
Query: 178 EGWLYKEARELFRHPEV 194
E W YK+ARELF HP+V
Sbjct: 275 EDWPYKDARELFFHPDV 291
Score = 133 bits (334), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 62/112 (55%), Positives = 85/112 (75%), Gaps = 7/112 (6%)
Query: 303 IELVADVAPSSIRES-------RKICIDASMSLYQFLIAVRSEGNQLMSVDGEPTSHLMG 355
++V + AP +I+E RK+ IDASMS+Y FLIAVRS+G QLM+ GE TSHLMG
Sbjct: 7 FQIVKEEAPDAIKEGEIKNQFGRKVAIDASMSIYSFLIAVRSDGQQLMNDSGETTSHLMG 66
Query: 356 TFYRTIRLVEHGLKPIYVFDGKPPTLKSGELNKRMEKREDAQKALAKAQEQG 407
FYRT+R+V++G+KP+YVFDG PP LKSGEL KR +++++A + L +A+E G
Sbjct: 67 MFYRTLRMVDNGIKPLYVFDGAPPKLKSGELAKRFQRKQEATEGLEEAKETG 118
Score = 92.0 bits (227), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 40/69 (57%), Positives = 54/69 (78%), Gaps = 3/69 (4%)
Query: 232 FIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENID---TKKYTVPEGWLYKEA 288
F+DLCILLGCDY D I +GP A++LI+EH ++EK++E I+ KKYT+PE W YK+A
Sbjct: 223 FVDLCILLGCDYLDPIPKVGPTTALKLIREHGTLEKVVEAIEKDPKKKYTLPEDWPYKDA 282
Query: 289 RELFRHPEI 297
RELF HP++
Sbjct: 283 RELFFHPDV 291
Score = 56.2 bits (134), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 23/49 (46%), Positives = 33/49 (67%)
Query: 3 LKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSSTTQGRLDSFF 51
KW PD DGLV++L +K F+EDR+R+G +L K ++ Q RL+ FF
Sbjct: 301 FKWDKPDIDGLVQFLVTEKGFSEDRVRSGGARLEKNLKNSQQARLEGFF 349
Score = 55.8 bits (133), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 23/49 (46%), Positives = 32/49 (65%)
Query: 409 LKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSTTTQGRLDSFF 457
KW PD DGLV++L +K F+EDR+R+G +L K + Q RL+ FF
Sbjct: 301 FKWDKPDIDGLVQFLVTEKGFSEDRVRSGGARLEKNLKNSQQARLEGFF 349
>gi|342882941|gb|EGU83505.1| hypothetical protein FOXB_05915 [Fusarium oxysporum Fo5176]
Length = 395
Score = 182 bits (461), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 84/137 (61%), Positives = 107/137 (78%), Gaps = 3/137 (2%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVLE 120
AP EAEAQCA + +AGKVYA A+EDMD L F + ILLRH+TFSE RK P+QE HLEKVLE
Sbjct: 155 APTEAEAQCAVLAQAGKVYAAASEDMDTLCFNAPILLRHLTFSEQRKEPIQEIHLEKVLE 214
Query: 121 GMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENID---TKKYTVP 177
G+ + ++F+DLCILLGCDY D I +GP A++LI+EH S+EK++E I+ KKYT+P
Sbjct: 215 GLNMERKQFVDLCILLGCDYLDPIPKVGPSTALKLIREHGSLEKVVEAIEKDPKKKYTIP 274
Query: 178 EGWLYKEARELFRHPEV 194
E W YK+AR+LF P+V
Sbjct: 275 EDWPYKDARDLFFEPDV 291
Score = 135 bits (339), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 63/110 (57%), Positives = 84/110 (76%), Gaps = 7/110 (6%)
Query: 305 LVADVAPSSIRES-------RKICIDASMSLYQFLIAVRSEGNQLMSVDGEPTSHLMGTF 357
++ + AP SI+E RK+ IDASMS+Y FLIAVRSEG QLM+ GE TSHLMG F
Sbjct: 9 IIKEEAPDSIKEGEIKNQFGRKVAIDASMSIYSFLIAVRSEGQQLMNESGETTSHLMGMF 68
Query: 358 YRTIRLVEHGLKPIYVFDGKPPTLKSGELNKRMEKREDAQKALAKAQEQG 407
YRT+R+V++G+KP+YVFDG PP LKSGEL KR +++++A + L +A+E G
Sbjct: 69 YRTLRMVDNGIKPLYVFDGAPPKLKSGELAKRFQRKQEATEGLEEAKETG 118
Score = 89.4 bits (220), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 39/69 (56%), Positives = 53/69 (76%), Gaps = 3/69 (4%)
Query: 232 FIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENID---TKKYTVPEGWLYKEA 288
F+DLCILLGCDY D I +GP A++LI+EH S+EK++E I+ KKYT+PE W YK+A
Sbjct: 223 FVDLCILLGCDYLDPIPKVGPSTALKLIREHGSLEKVVEAIEKDPKKKYTIPEDWPYKDA 282
Query: 289 RELFRHPEI 297
R+LF P++
Sbjct: 283 RDLFFEPDV 291
Score = 56.2 bits (134), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 23/49 (46%), Positives = 33/49 (67%)
Query: 3 LKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSSTTQGRLDSFF 51
KW PD +GLV++L +K F+EDR+R+G +L K S+ Q RL+ FF
Sbjct: 301 FKWEKPDMEGLVQFLVTEKGFSEDRVRSGGARLEKNLKSSQQARLEGFF 349
Score = 55.1 bits (131), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 22/49 (44%), Positives = 33/49 (67%)
Query: 409 LKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSTTTQGRLDSFF 457
KW PD +GLV++L +K F+EDR+R+G +L K ++ Q RL+ FF
Sbjct: 301 FKWEKPDMEGLVQFLVTEKGFSEDRVRSGGARLEKNLKSSQQARLEGFF 349
>gi|19115884|ref|NP_594972.1| FEN-1 endonuclease Rad2 [Schizosaccharomyces pombe 972h-]
gi|730469|sp|P39750.1|FEN1_SCHPO RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=DNA
repair protein rad2; AltName: Full=Flap
structure-specific endonuclease 1
gi|2408077|emb|CAB16282.1| FEN-1 endonuclease Rad2 [Schizosaccharomyces pombe]
gi|4456854|emb|CAB36991.1| RAD2 protein [Schizosaccharomyces pombe]
Length = 380
Score = 181 bits (459), Expect = 7e-43, Method: Compositional matrix adjust.
Identities = 79/142 (55%), Positives = 110/142 (77%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVLE 120
APCEAEAQCAA+ ++GKVYA A+EDMD L F + +LLRH+TFSE RK P+ E+++EK L
Sbjct: 156 APCEAEAQCAALARSGKVYAAASEDMDTLCFQAPVLLRHLTFSEQRKEPISEYNIEKALN 215
Query: 121 GMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGW 180
G+++S E+F+DLCILLGCDYC+ IRG+GP RA+ELI+++ ++++ ++ D KY +PE W
Sbjct: 216 GLDMSVEQFVDLCILLGCDYCEPIRGVGPARAVELIRQYGTLDRFVKEADRSKYPIPEDW 275
Query: 181 LYKEARELFRHPEVADPETIEF 202
Y++AR LF EV E IE
Sbjct: 276 PYEDARRLFLDAEVLPGEEIEL 297
Score = 122 bits (305), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 61/118 (51%), Positives = 87/118 (73%), Gaps = 8/118 (6%)
Query: 304 ELVADVAPSSIRES-------RKICIDASMSLYQFLIAVRS-EGNQLMSVDGEPTSHLMG 355
+++++ AP+S++ + RK+ IDASMSLYQFLI VRS +G QLM+ GE TSHLMG
Sbjct: 8 QVLSEHAPASVKHNDIKNYFGRKVAIDASMSLYQFLIQVRSQDGQQLMNEQGETTSHLMG 67
Query: 356 TFYRTIRLVEHGLKPIYVFDGKPPTLKSGELNKRMEKREDAQKALAKAQEQGKLKWSD 413
FYRT+R+V++G+KP +VFDGKPPTLKSGEL KR+ + + A++ + +E G + D
Sbjct: 68 MFYRTLRIVDNGIKPCFVFDGKPPTLKSGELAKRVARHQKAREDQEETKEVGTAEMVD 125
Score = 92.4 bits (228), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 38/74 (51%), Positives = 55/74 (74%)
Query: 232 FIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGWLYKEAREL 291
F+DLCILLGCDYC+ IRG+GP RA+ELI+++ ++++ ++ D KY +PE W Y++AR L
Sbjct: 224 FVDLCILLGCDYCEPIRGVGPARAVELIRQYGTLDRFVKEADRSKYPIPEDWPYEDARRL 283
Query: 292 FRHPEIADPETIEL 305
F E+ E IEL
Sbjct: 284 FLDAEVLPGEEIEL 297
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 31/68 (45%), Positives = 44/68 (64%), Gaps = 4/68 (5%)
Query: 394 EDAQKALAKAQ----EQGKLKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSTTT 449
EDA++ A+ E+ +LKW PD DG++++L +K F EDR++ G +L KA T
Sbjct: 278 EDARRLFLDAEVLPGEEIELKWKSPDADGIIQFLVKEKGFNEDRVKLGINRLEKASKTIP 337
Query: 450 QGRLDSFF 457
QGRLDSFF
Sbjct: 338 QGRLDSFF 345
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/71 (39%), Positives = 44/71 (61%), Gaps = 1/71 (1%)
Query: 1 MTLKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSSTTQGRLDSFFTIRREEKRK 60
+ LKW PD DG++++L +K F EDR++ G +L KA + QGRLDSFF +K
Sbjct: 295 IELKWKSPDADGIIQFLVKEKGFNEDRVKLGINRLEKASKTIPQGRLDSFFKPVPSSPKK 354
Query: 61 APCEAEAQCAA 71
P + +++ +A
Sbjct: 355 -PVDTKSKGSA 364
>gi|357441985|ref|XP_003591270.1| Flap endonuclease 1a [Medicago truncatula]
gi|355480318|gb|AES61521.1| Flap endonuclease 1a [Medicago truncatula]
Length = 384
Score = 181 bits (459), Expect = 8e-43, Method: Compositional matrix adjust.
Identities = 82/135 (60%), Positives = 108/135 (80%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVLE 120
AP EAEAQCAA+ KAGKVYA A+EDMD+LTFG+ LRH+ ++K+PV EF + K+LE
Sbjct: 156 APSEAEAQCAALCKAGKVYAVASEDMDSLTFGAPKFLRHLMDPSSKKIPVMEFDVAKILE 215
Query: 121 GMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGW 180
++L+ ++FIDLCIL GCDYCD+IRGIG A++LI++H SIEKILENI ++Y VP+ W
Sbjct: 216 ELDLTMDQFIDLCILSGCDYCDNIRGIGGMTALKLIRQHGSIEKILENISKERYQVPDDW 275
Query: 181 LYKEARELFRHPEVA 195
Y+EAR LF+ PEV+
Sbjct: 276 PYQEARRLFKEPEVS 290
Score = 115 bits (289), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 58/110 (52%), Positives = 78/110 (70%), Gaps = 8/110 (7%)
Query: 304 ELVADVAPSSIRES-------RKICIDASMSLYQFLIAVRSEGNQLMSVD-GEPTSHLMG 355
+L+AD AP S++E+ RKI +DASMS+YQFLI V G ++++ + GE TSHL G
Sbjct: 8 KLLADNAPKSMKENKFESYFGRKIAVDASMSIYQFLIVVGRSGTEMLTNEAGEVTSHLQG 67
Query: 356 TFYRTIRLVEHGLKPIYVFDGKPPTLKSGELNKRMEKREDAQKALAKAQE 405
F RTIRL+E G+KP+YVFDGKPP +K+ EL KR+ KR +A L +A E
Sbjct: 68 MFARTIRLLEAGMKPVYVFDGKPPEMKNQELKKRLSKRAEATAGLTEALE 117
Score = 101 bits (252), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 46/75 (61%), Positives = 59/75 (78%), Gaps = 1/75 (1%)
Query: 232 FIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGWLYKEAREL 291
FIDLCIL GCDYCD+IRGIG A++LI++H SIEKILENI ++Y VP+ W Y+EAR L
Sbjct: 224 FIDLCILSGCDYCDNIRGIGGMTALKLIRQHGSIEKILENISKERYQVPDDWPYQEARRL 283
Query: 292 FRHPEIA-DPETIEL 305
F+ PE++ D E + L
Sbjct: 284 FKEPEVSTDDEVLNL 298
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 22/51 (43%), Positives = 35/51 (68%)
Query: 1 MTLKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSSTTQGRLDSFF 51
+ LKWS PDE+GL+ +L + F DR+ +K+ A++ ++QGRL+SFF
Sbjct: 296 LNLKWSPPDEEGLITFLVNENGFNSDRVTKAIEKIKAAKNKSSQGRLESFF 346
Score = 57.0 bits (136), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 22/49 (44%), Positives = 34/49 (69%)
Query: 409 LKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSTTTQGRLDSFF 457
LKWS PDE+GL+ +L + F DR+ +K+ A++ ++QGRL+SFF
Sbjct: 298 LKWSPPDEEGLITFLVNENGFNSDRVTKAIEKIKAAKNKSSQGRLESFF 346
>gi|357441987|ref|XP_003591271.1| Flap endonuclease 1a [Medicago truncatula]
gi|355480319|gb|AES61522.1| Flap endonuclease 1a [Medicago truncatula]
Length = 369
Score = 181 bits (458), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 82/135 (60%), Positives = 108/135 (80%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVLE 120
AP EAEAQCAA+ KAGKVYA A+EDMD+LTFG+ LRH+ ++K+PV EF + K+LE
Sbjct: 141 APSEAEAQCAALCKAGKVYAVASEDMDSLTFGAPKFLRHLMDPSSKKIPVMEFDVAKILE 200
Query: 121 GMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGW 180
++L+ ++FIDLCIL GCDYCD+IRGIG A++LI++H SIEKILENI ++Y VP+ W
Sbjct: 201 ELDLTMDQFIDLCILSGCDYCDNIRGIGGMTALKLIRQHGSIEKILENISKERYQVPDDW 260
Query: 181 LYKEARELFRHPEVA 195
Y+EAR LF+ PEV+
Sbjct: 261 PYQEARRLFKEPEVS 275
Score = 108 bits (269), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 51/89 (57%), Positives = 66/89 (74%), Gaps = 1/89 (1%)
Query: 318 RKICIDASMSLYQFLIAVRSEGNQLMSVD-GEPTSHLMGTFYRTIRLVEHGLKPIYVFDG 376
RKI +DASMS+YQFLI V G ++++ + GE TSHL G F RTIRL+E G+KP+YVFDG
Sbjct: 14 RKIAVDASMSIYQFLIVVGRSGTEMLTNEAGEVTSHLQGMFARTIRLLEAGMKPVYVFDG 73
Query: 377 KPPTLKSGELNKRMEKREDAQKALAKAQE 405
KPP +K+ EL KR+ KR +A L +A E
Sbjct: 74 KPPEMKNQELKKRLSKRAEATAGLTEALE 102
Score = 101 bits (251), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 46/75 (61%), Positives = 59/75 (78%), Gaps = 1/75 (1%)
Query: 232 FIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGWLYKEAREL 291
FIDLCIL GCDYCD+IRGIG A++LI++H SIEKILENI ++Y VP+ W Y+EAR L
Sbjct: 209 FIDLCILSGCDYCDNIRGIGGMTALKLIRQHGSIEKILENISKERYQVPDDWPYQEARRL 268
Query: 292 FRHPEIA-DPETIEL 305
F+ PE++ D E + L
Sbjct: 269 FKEPEVSTDDEVLNL 283
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 22/51 (43%), Positives = 35/51 (68%)
Query: 1 MTLKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSSTTQGRLDSFF 51
+ LKWS PDE+GL+ +L + F DR+ +K+ A++ ++QGRL+SFF
Sbjct: 281 LNLKWSPPDEEGLITFLVNENGFNSDRVTKAIEKIKAAKNKSSQGRLESFF 331
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 22/49 (44%), Positives = 34/49 (69%)
Query: 409 LKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSTTTQGRLDSFF 457
LKWS PDE+GL+ +L + F DR+ +K+ A++ ++QGRL+SFF
Sbjct: 283 LKWSPPDEEGLITFLVNENGFNSDRVTKAIEKIKAAKNKSSQGRLESFF 331
>gi|358394482|gb|EHK43875.1| hypothetical protein TRIATDRAFT_300264 [Trichoderma atroviride IMI
206040]
Length = 395
Score = 181 bits (458), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 82/137 (59%), Positives = 108/137 (78%), Gaps = 3/137 (2%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVLE 120
AP EAEAQCA + +AGKVYA A+EDMD L F + ILLRH+TFSE RK P+QE HL++VLE
Sbjct: 155 APTEAEAQCAVLARAGKVYAAASEDMDTLCFNTPILLRHLTFSEQRKEPIQEIHLDRVLE 214
Query: 121 GMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENID---TKKYTVP 177
G+ + ++F+DLCILLGCDY D + +GP A++LI+EH S+EK++E I+ KKYT+P
Sbjct: 215 GLNMERKQFVDLCILLGCDYLDPVPKVGPTTALKLIREHGSLEKVVEAIEKDSKKKYTLP 274
Query: 178 EGWLYKEARELFRHPEV 194
E W YK+ARELF +P+V
Sbjct: 275 EDWPYKDARELFFNPDV 291
Score = 133 bits (335), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 62/112 (55%), Positives = 85/112 (75%), Gaps = 7/112 (6%)
Query: 303 IELVADVAPSSIRES-------RKICIDASMSLYQFLIAVRSEGNQLMSVDGEPTSHLMG 355
++V + AP +I+E RK+ IDASMS+Y FLIAVRS+G QLM+ GE TSHLMG
Sbjct: 7 FQIVKEEAPDAIKEGEIKNQFGRKVAIDASMSIYSFLIAVRSDGQQLMNESGETTSHLMG 66
Query: 356 TFYRTIRLVEHGLKPIYVFDGKPPTLKSGELNKRMEKREDAQKALAKAQEQG 407
FYRT+R+V++G+KP+YVFDG PP LKSGEL KR +++++A + L +A+E G
Sbjct: 67 MFYRTLRMVDNGIKPLYVFDGAPPKLKSGELAKRFQRKQEATEGLEEAKETG 118
Score = 90.1 bits (222), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 39/69 (56%), Positives = 54/69 (78%), Gaps = 3/69 (4%)
Query: 232 FIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENID---TKKYTVPEGWLYKEA 288
F+DLCILLGCDY D + +GP A++LI+EH S+EK++E I+ KKYT+PE W YK+A
Sbjct: 223 FVDLCILLGCDYLDPVPKVGPTTALKLIREHGSLEKVVEAIEKDSKKKYTLPEDWPYKDA 282
Query: 289 RELFRHPEI 297
RELF +P++
Sbjct: 283 RELFFNPDV 291
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 22/49 (44%), Positives = 31/49 (63%)
Query: 3 LKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSSTTQGRLDSFF 51
KW PD +GLV +L +K F+EDR+R+ +L K S+ Q RL+ FF
Sbjct: 301 FKWEKPDMEGLVTFLVTEKGFSEDRVRSAGARLEKNLKSSQQARLEGFF 349
Score = 52.0 bits (123), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 21/49 (42%), Positives = 31/49 (63%)
Query: 409 LKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSTTTQGRLDSFF 457
KW PD +GLV +L +K F+EDR+R+ +L K ++ Q RL+ FF
Sbjct: 301 FKWEKPDMEGLVTFLVTEKGFSEDRVRSAGARLEKNLKSSQQARLEGFF 349
>gi|451853401|gb|EMD66695.1| hypothetical protein COCSADRAFT_35197 [Cochliobolus sativus ND90Pr]
Length = 395
Score = 181 bits (458), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 82/137 (59%), Positives = 106/137 (77%), Gaps = 3/137 (2%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVLE 120
AP EAEAQCA + K GKVYA A+EDMD LTF S ILLRH+TFSE RK P+ E HL+KVLE
Sbjct: 155 APTEAEAQCATLAKGGKVYAAASEDMDTLTFASPILLRHLTFSEQRKEPILEIHLDKVLE 214
Query: 121 GMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENI---DTKKYTVP 177
G+E+ ++FIDLCILLGCDY D I+GIGP A++LI+EH+ +E ++E+I +KK T+P
Sbjct: 215 GLEMDQKQFIDLCILLGCDYLDPIKGIGPSTALKLIREHKDLEGVVEHIKSQSSKKLTIP 274
Query: 178 EGWLYKEARELFRHPEV 194
+ W + +AR LF P+V
Sbjct: 275 DDWPFADARLLFLEPDV 291
Score = 121 bits (303), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 55/97 (56%), Positives = 74/97 (76%), Gaps = 7/97 (7%)
Query: 304 ELVADVAPSSIRES-------RKICIDASMSLYQFLIAVRSEGNQLMSVDGEPTSHLMGT 356
+L+ + P ++++ RK+ IDASMS+Y FLIAVRS+G QLMS GE TSHLMG
Sbjct: 8 QLIEEHTPEAVKKGEIKNQFGRKVAIDASMSIYSFLIAVRSDGQQLMSETGETTSHLMGL 67
Query: 357 FYRTIRLVEHGLKPIYVFDGKPPTLKSGELNKRMEKR 393
FYRT+R+V++G+KP+YVFDG PP LKSGEL KR +++
Sbjct: 68 FYRTMRMVDNGIKPLYVFDGAPPKLKSGELAKRFQRK 104
Score = 85.9 bits (211), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 36/69 (52%), Positives = 52/69 (75%), Gaps = 3/69 (4%)
Query: 232 FIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENI---DTKKYTVPEGWLYKEA 288
FIDLCILLGCDY D I+GIGP A++LI+EH+ +E ++E+I +KK T+P+ W + +A
Sbjct: 223 FIDLCILLGCDYLDPIKGIGPSTALKLIREHKDLEGVVEHIKSQSSKKLTIPDDWPFADA 282
Query: 289 RELFRHPEI 297
R LF P++
Sbjct: 283 RLLFLEPDV 291
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/49 (55%), Positives = 33/49 (67%)
Query: 409 LKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSTTTQGRLDSFF 457
KW PD +GLVK+L +K+F EDR+RNGA KL K T Q RL+ FF
Sbjct: 301 FKWEAPDVEGLVKFLVEEKHFNEDRVRNGAAKLQKNMKTAQQSRLEGFF 349
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 26/49 (53%), Positives = 33/49 (67%)
Query: 3 LKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSSTTQGRLDSFF 51
KW PD +GLVK+L +K+F EDR+RNGA KL K + Q RL+ FF
Sbjct: 301 FKWEAPDVEGLVKFLVEEKHFNEDRVRNGAAKLQKNMKTAQQSRLEGFF 349
>gi|378733116|gb|EHY59575.1| flap endonuclease 1 [Exophiala dermatitidis NIH/UT8656]
Length = 395
Score = 180 bits (457), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 85/144 (59%), Positives = 109/144 (75%), Gaps = 6/144 (4%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVLE 120
AP EAEAQCA + +AGKVYA A+EDMD L F + ILLRH+TFSE RK P+QE HL+K LE
Sbjct: 155 APTEAEAQCAVLARAGKVYAAASEDMDTLCFNAPILLRHLTFSEQRKEPIQEIHLDKTLE 214
Query: 121 GMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDT---KKYTVP 177
G+ + +FIDLCILLGCDY D I +GP A++LI+EH ++EK++E I+ K+Y++P
Sbjct: 215 GLGMDRTQFIDLCILLGCDYVDPIPKVGPNTALKLIREHGTLEKVVEFIENDPKKRYSLP 274
Query: 178 EGWLYKEARELFRHPEVA---DPE 198
E W YK+ARELF HP+V DPE
Sbjct: 275 EDWPYKDARELFLHPDVRSADDPE 298
Score = 130 bits (328), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 62/110 (56%), Positives = 81/110 (73%), Gaps = 7/110 (6%)
Query: 305 LVADVAPSSIRES-------RKICIDASMSLYQFLIAVRSEGNQLMSVDGEPTSHLMGTF 357
++A+ AP +I+ RK+ IDASMS+Y FLIAVRSEG QLMS GE TSHLMG F
Sbjct: 9 VIAEEAPDAIKTGEIKNHFGRKVAIDASMSIYSFLIAVRSEGQQLMSDTGETTSHLMGMF 68
Query: 358 YRTIRLVEHGLKPIYVFDGKPPTLKSGELNKRMEKREDAQKALAKAQEQG 407
YRT+R+V++G+KP+YVFDG PP LKSGEL KR ++ +A + +A+E G
Sbjct: 69 YRTLRMVDNGIKPLYVFDGAPPKLKSGELAKRFARKNEANEQAEEAKETG 118
Score = 93.2 bits (230), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 45/92 (48%), Positives = 63/92 (68%), Gaps = 11/92 (11%)
Query: 216 SIRGIGPKRAIELLYSFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDT- 274
++ G+G R FIDLCILLGCDY D I +GP A++LI+EH ++EK++E I+
Sbjct: 212 TLEGLGMDRT-----QFIDLCILLGCDYVDPIPKVGPNTALKLIREHGTLEKVVEFIEND 266
Query: 275 --KKYTVPEGWLYKEARELFRHPEIA---DPE 301
K+Y++PE W YK+ARELF HP++ DPE
Sbjct: 267 PKKRYSLPEDWPYKDARELFLHPDVRSADDPE 298
Score = 60.1 bits (144), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 29/61 (47%), Positives = 39/61 (63%), Gaps = 2/61 (3%)
Query: 409 LKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSTTTQGRLDSFFTI--RREEKRK 466
KW PD +GLV++L +K F EDR+RN A+KL K T Q RL+ FF + EE++K
Sbjct: 301 FKWEAPDVEGLVQFLVNEKGFNEDRVRNAAQKLQKNVKTAQQSRLEGFFKAVPKTEEEKK 360
Query: 467 S 467
S
Sbjct: 361 S 361
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/61 (44%), Positives = 39/61 (63%), Gaps = 2/61 (3%)
Query: 3 LKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSSTTQGRLDSFFTI--RREEKRK 60
KW PD +GLV++L +K F EDR+RN A+KL K + Q RL+ FF + EE++K
Sbjct: 301 FKWEAPDVEGLVQFLVNEKGFNEDRVRNAAQKLQKNVKTAQQSRLEGFFKAVPKTEEEKK 360
Query: 61 A 61
+
Sbjct: 361 S 361
>gi|121704724|ref|XP_001270625.1| Flap endonuclease, putative [Aspergillus clavatus NRRL 1]
gi|119398771|gb|EAW09199.1| Flap endonuclease, putative [Aspergillus clavatus NRRL 1]
Length = 401
Score = 180 bits (457), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 81/137 (59%), Positives = 107/137 (78%), Gaps = 3/137 (2%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVLE 120
AP EAEAQCA + +AGKVYA A+EDMD L F + ILLRH+TFSE RK P+QE HL +VLE
Sbjct: 161 APTEAEAQCAVLARAGKVYAAASEDMDTLCFEAPILLRHLTFSEQRKEPIQEIHLNRVLE 220
Query: 121 GMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDT---KKYTVP 177
G+++ +FID+CILLGCDY + I +GP A++LI+EH S+EK++E I++ KKY +P
Sbjct: 221 GLDMDRSQFIDMCILLGCDYLEPIPKVGPNTALKLIREHGSLEKVVEAIESDPKKKYVIP 280
Query: 178 EGWLYKEARELFRHPEV 194
E W Y++ARELF HP+V
Sbjct: 281 EDWPYQDARELFHHPDV 297
Score = 121 bits (303), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 56/92 (60%), Positives = 70/92 (76%), Gaps = 7/92 (7%)
Query: 305 LVADVAPSSIRES-------RKICIDASMSLYQFLIAVRSEGNQLMSVDGEPTSHLMGTF 357
++ + AP +++ RK+ IDASMS+Y FLIAVRSEG QLMS GE TSHLMG F
Sbjct: 15 VIQENAPDAVKSGDIKNHFGRKVAIDASMSIYSFLIAVRSEGQQLMSESGETTSHLMGMF 74
Query: 358 YRTIRLVEHGLKPIYVFDGKPPTLKSGELNKR 389
YRT+R+V++G+KP+YVFDG PP LKSGEL KR
Sbjct: 75 YRTLRMVDNGIKPLYVFDGAPPKLKSGELAKR 106
Score = 91.3 bits (225), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 38/69 (55%), Positives = 54/69 (78%), Gaps = 3/69 (4%)
Query: 232 FIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDT---KKYTVPEGWLYKEA 288
FID+CILLGCDY + I +GP A++LI+EH S+EK++E I++ KKY +PE W Y++A
Sbjct: 229 FIDMCILLGCDYLEPIPKVGPNTALKLIREHGSLEKVVEAIESDPKKKYVIPEDWPYQDA 288
Query: 289 RELFRHPEI 297
RELF HP++
Sbjct: 289 RELFHHPDV 297
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 25/49 (51%), Positives = 30/49 (61%)
Query: 409 LKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSTTTQGRLDSFF 457
KW PD + LV +L DK F EDR+RNGA +L K T Q RL+ FF
Sbjct: 307 FKWEAPDIEALVDFLVKDKGFNEDRVRNGAARLQKNLKTAQQSRLEGFF 355
Score = 55.5 bits (132), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 24/49 (48%), Positives = 30/49 (61%)
Query: 3 LKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSSTTQGRLDSFF 51
KW PD + LV +L DK F EDR+RNGA +L K + Q RL+ FF
Sbjct: 307 FKWEAPDIEALVDFLVKDKGFNEDRVRNGAARLQKNLKTAQQSRLEGFF 355
>gi|317374931|sp|A1CJ75.2|FEN1_ASPCL RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
Length = 395
Score = 180 bits (456), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 81/137 (59%), Positives = 107/137 (78%), Gaps = 3/137 (2%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVLE 120
AP EAEAQCA + +AGKVYA A+EDMD L F + ILLRH+TFSE RK P+QE HL +VLE
Sbjct: 155 APTEAEAQCAVLARAGKVYAAASEDMDTLCFEAPILLRHLTFSEQRKEPIQEIHLNRVLE 214
Query: 121 GMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDT---KKYTVP 177
G+++ +FID+CILLGCDY + I +GP A++LI+EH S+EK++E I++ KKY +P
Sbjct: 215 GLDMDRSQFIDMCILLGCDYLEPIPKVGPNTALKLIREHGSLEKVVEAIESDPKKKYVIP 274
Query: 178 EGWLYKEARELFRHPEV 194
E W Y++ARELF HP+V
Sbjct: 275 EDWPYQDARELFHHPDV 291
Score = 121 bits (303), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 56/94 (59%), Positives = 71/94 (75%), Gaps = 7/94 (7%)
Query: 303 IELVADVAPSSIRES-------RKICIDASMSLYQFLIAVRSEGNQLMSVDGEPTSHLMG 355
+++ + AP +++ RK+ IDASMS+Y FLIAVRSEG QLMS GE TSHLMG
Sbjct: 7 FQVIQENAPDAVKSGDIKNHFGRKVAIDASMSIYSFLIAVRSEGQQLMSESGETTSHLMG 66
Query: 356 TFYRTIRLVEHGLKPIYVFDGKPPTLKSGELNKR 389
FYRT+R+V++G+KP+YVFDG PP LKSGEL KR
Sbjct: 67 MFYRTLRMVDNGIKPLYVFDGAPPKLKSGELAKR 100
Score = 91.3 bits (225), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 38/69 (55%), Positives = 54/69 (78%), Gaps = 3/69 (4%)
Query: 232 FIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDT---KKYTVPEGWLYKEA 288
FID+CILLGCDY + I +GP A++LI+EH S+EK++E I++ KKY +PE W Y++A
Sbjct: 223 FIDMCILLGCDYLEPIPKVGPNTALKLIREHGSLEKVVEAIESDPKKKYVIPEDWPYQDA 282
Query: 289 RELFRHPEI 297
RELF HP++
Sbjct: 283 RELFHHPDV 291
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 25/49 (51%), Positives = 30/49 (61%)
Query: 409 LKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSTTTQGRLDSFF 457
KW PD + LV +L DK F EDR+RNGA +L K T Q RL+ FF
Sbjct: 301 FKWEAPDIEALVDFLVKDKGFNEDRVRNGAARLQKNLKTAQQSRLEGFF 349
Score = 55.5 bits (132), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 24/49 (48%), Positives = 30/49 (61%)
Query: 3 LKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSSTTQGRLDSFF 51
KW PD + LV +L DK F EDR+RNGA +L K + Q RL+ FF
Sbjct: 301 FKWEAPDIEALVDFLVKDKGFNEDRVRNGAARLQKNLKTAQQSRLEGFF 349
>gi|366994432|ref|XP_003676980.1| hypothetical protein NCAS_0F01410 [Naumovozyma castellii CBS 4309]
gi|342302848|emb|CCC70625.1| hypothetical protein NCAS_0F01410 [Naumovozyma castellii CBS 4309]
Length = 379
Score = 180 bits (456), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 86/144 (59%), Positives = 113/144 (78%), Gaps = 4/144 (2%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVLE 120
AP EAE+QCA + K GKVYA A+EDMD L + + LLRH+TFSEA+K P+QE + E+VL+
Sbjct: 153 APGEAESQCAELAKKGKVYAAASEDMDTLCYRTPYLLRHLTFSEAKKEPIQEINTEQVLQ 212
Query: 121 GMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDT----KKYTV 176
G++L+ E+FIDL I+LGCDYCD+IRG+GP A++LIKEH S+EKI+E I++ KK+ V
Sbjct: 213 GLDLTLEQFIDLGIMLGCDYCDNIRGVGPVTALKLIKEHGSLEKIVEFIESDEGNKKWKV 272
Query: 177 PEGWLYKEARELFRHPEVADPETI 200
PE W YKEARELF P+V D + I
Sbjct: 273 PENWPYKEARELFLKPDVIDGDEI 296
Score = 128 bits (322), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 64/111 (57%), Positives = 85/111 (76%), Gaps = 8/111 (7%)
Query: 305 LVADVAPSSIRES-------RKICIDASMSLYQFLIAVRS-EGNQLMSVDGEPTSHLMGT 356
++++ AP +IR+S RK+ IDASMSLYQFLIAVR +G QL + GE TSHLMG
Sbjct: 9 IISENAPLAIRKSEIKAFFGRKVAIDASMSLYQFLIAVRQQDGGQLTNEAGETTSHLMGM 68
Query: 357 FYRTIRLVEHGLKPIYVFDGKPPTLKSGELNKRMEKREDAQKALAKAQEQG 407
FYRT+R++++G+KP YVFDGKPPTLKS EL+KR +RE+ +K LA+A +Q
Sbjct: 69 FYRTLRMIDNGIKPCYVFDGKPPTLKSHELSKRTSRREETEKKLAEAVDQA 119
Score = 101 bits (251), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 72/187 (38%), Positives = 98/187 (52%), Gaps = 31/187 (16%)
Query: 126 HEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGWLYKEA 185
++E L L+G Y ++ G + EL K+ + E++DT Y P
Sbjct: 136 NDEAKKLLELMGIPYVNA-PGEAESQCAELAKKGKVYAAASEDMDTLCYRTPY------- 187
Query: 186 RELFRHPEV--ADPETIEFIDL-CILLGCDYCDSIRGIGPKRAIELLYSFIDLCILLGCD 242
L RH A E I+ I+ +L G D L FIDL I+LGCD
Sbjct: 188 --LLRHLTFSEAKKEPIQEINTEQVLQGLDLT--------------LEQFIDLGIMLGCD 231
Query: 243 YCDSIRGIGPKRAIELIKEHRSIEKILENIDT----KKYTVPEGWLYKEARELFRHPEIA 298
YCD+IRG+GP A++LIKEH S+EKI+E I++ KK+ VPE W YKEARELF P++
Sbjct: 232 YCDNIRGVGPVTALKLIKEHGSLEKIVEFIESDEGNKKWKVPENWPYKEARELFLKPDVI 291
Query: 299 DPETIEL 305
D + I L
Sbjct: 292 DGDEITL 298
Score = 63.2 bits (152), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 27/53 (50%), Positives = 36/53 (67%)
Query: 1 MTLKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSSTTQGRLDSFFTI 53
+TLKW P E L+ YLCG+K F E+R+++G K+L K S QGRLD FF +
Sbjct: 296 ITLKWQPPKEQELIDYLCGEKLFNEERVKSGIKRLQKGLKSGVQGRLDGFFKV 348
Score = 59.3 bits (142), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 25/51 (49%), Positives = 34/51 (66%)
Query: 409 LKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSTTTQGRLDSFFTI 459
LKW P E L+ YLCG+K F E+R+++G K+L K + QGRLD FF +
Sbjct: 298 LKWQPPKEQELIDYLCGEKLFNEERVKSGIKRLQKGLKSGVQGRLDGFFKV 348
>gi|452004834|gb|EMD97290.1| hypothetical protein COCHEDRAFT_1220743 [Cochliobolus
heterostrophus C5]
Length = 395
Score = 180 bits (456), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 82/137 (59%), Positives = 106/137 (77%), Gaps = 3/137 (2%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVLE 120
AP EAEAQCAA+ K GKVYA A+EDMD LTF S ILLRH+TFSE RK P+ E HL+KVLE
Sbjct: 155 APTEAEAQCAALAKGGKVYAAASEDMDTLTFASPILLRHLTFSEQRKEPILEIHLDKVLE 214
Query: 121 GMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENI---DTKKYTVP 177
G+ + ++FIDLCILLGCDY D I+GIGP A++LI+EH+ +E ++E+I +KK T+P
Sbjct: 215 GLAMDQKQFIDLCILLGCDYLDPIKGIGPSTALKLIREHKDLEGVVEHIKSQSSKKLTIP 274
Query: 178 EGWLYKEARELFRHPEV 194
+ W + +AR LF P+V
Sbjct: 275 DDWPFADARLLFLEPDV 291
Score = 119 bits (299), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 54/97 (55%), Positives = 74/97 (76%), Gaps = 7/97 (7%)
Query: 304 ELVADVAPSSIRES-------RKICIDASMSLYQFLIAVRSEGNQLMSVDGEPTSHLMGT 356
+L+ + P ++++ RK+ IDASMS+Y FLIAVRS+G QLM+ GE TSHLMG
Sbjct: 8 QLIDEHTPEAVKKGEIKNQFGRKVAIDASMSIYSFLIAVRSDGQQLMNETGETTSHLMGL 67
Query: 357 FYRTIRLVEHGLKPIYVFDGKPPTLKSGELNKRMEKR 393
FYRT+R+V++G+KP+YVFDG PP LKSGEL KR +++
Sbjct: 68 FYRTMRMVDNGIKPLYVFDGAPPKLKSGELAKRFQRK 104
Score = 85.9 bits (211), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 36/69 (52%), Positives = 52/69 (75%), Gaps = 3/69 (4%)
Query: 232 FIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENI---DTKKYTVPEGWLYKEA 288
FIDLCILLGCDY D I+GIGP A++LI+EH+ +E ++E+I +KK T+P+ W + +A
Sbjct: 223 FIDLCILLGCDYLDPIKGIGPSTALKLIREHKDLEGVVEHIKSQSSKKLTIPDDWPFADA 282
Query: 289 RELFRHPEI 297
R LF P++
Sbjct: 283 RLLFLEPDV 291
Score = 60.8 bits (146), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/49 (55%), Positives = 33/49 (67%)
Query: 409 LKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSTTTQGRLDSFF 457
KW PD +GLVK+L +K+F EDR+RNGA KL K T Q RL+ FF
Sbjct: 301 FKWEAPDVEGLVKFLVEEKHFNEDRVRNGAAKLQKNMKTAQQSRLEGFF 349
Score = 59.7 bits (143), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 26/49 (53%), Positives = 33/49 (67%)
Query: 3 LKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSSTTQGRLDSFF 51
KW PD +GLVK+L +K+F EDR+RNGA KL K + Q RL+ FF
Sbjct: 301 FKWEAPDVEGLVKFLVEEKHFNEDRVRNGAAKLQKNMKTAQQSRLEGFF 349
>gi|367003685|ref|XP_003686576.1| hypothetical protein TPHA_0G03010 [Tetrapisispora phaffii CBS 4417]
gi|357524877|emb|CCE64142.1| hypothetical protein TPHA_0G03010 [Tetrapisispora phaffii CBS 4417]
Length = 380
Score = 180 bits (456), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 84/146 (57%), Positives = 112/146 (76%), Gaps = 4/146 (2%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVLE 120
APCEAE+QCA + K GKVYA A+EDMD L + + LLRH+TFSEA+K P+ E + E VLE
Sbjct: 153 APCEAESQCAELAKKGKVYAAASEDMDTLCYRTPFLLRHLTFSEAKKEPIHEINTETVLE 212
Query: 121 GMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDT----KKYTV 176
G+EL+ E+FIDL I+LGCDYC+SIRG+GP A++LIKEH S+EKI+E +++ K+ +
Sbjct: 213 GLELTLEQFIDLGIMLGCDYCESIRGVGPVTALKLIKEHGSLEKIIEFVESPDSNSKWKI 272
Query: 177 PEGWLYKEARELFRHPEVADPETIEF 202
PE W YKEAR+LF +P+V D I+
Sbjct: 273 PENWPYKEARDLFLNPDVIDGADIDL 298
Score = 127 bits (318), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 62/113 (54%), Positives = 85/113 (75%), Gaps = 8/113 (7%)
Query: 305 LVADVAPSSIRES-------RKICIDASMSLYQFLIAVRS-EGNQLMSVDGEPTSHLMGT 356
++++ AP+++R+S RK+ IDASMSLYQFLIAVR +G QL + +GE TSHLMG
Sbjct: 9 IISEHAPTAVRKSDIKAFFGRKVAIDASMSLYQFLIAVRQQDGGQLTNENGETTSHLMGI 68
Query: 357 FYRTIRLVEHGLKPIYVFDGKPPTLKSGELNKRMEKREDAQKALAKAQEQGKL 409
FYRT+R++++G+KP YVFDGKPP LKS EL KR +R + +K LA+A EQ +
Sbjct: 69 FYRTLRMIDNGIKPCYVFDGKPPVLKSHELTKRTARRVETEKKLAEAVEQADI 121
Score = 96.7 bits (239), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 44/81 (54%), Positives = 61/81 (75%), Gaps = 4/81 (4%)
Query: 229 LYSFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDT----KKYTVPEGWL 284
L FIDL I+LGCDYC+SIRG+GP A++LIKEH S+EKI+E +++ K+ +PE W
Sbjct: 218 LEQFIDLGIMLGCDYCESIRGVGPVTALKLIKEHGSLEKIIEFVESPDSNSKWKIPENWP 277
Query: 285 YKEARELFRHPEIADPETIEL 305
YKEAR+LF +P++ D I+L
Sbjct: 278 YKEARDLFLNPDVIDGADIDL 298
Score = 68.6 bits (166), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 29/53 (54%), Positives = 37/53 (69%)
Query: 1 MTLKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSSTTQGRLDSFFTI 53
+ LKW P E+ LV YLCGDK F+E+R+R+G K+L K S QGRLD FF +
Sbjct: 296 IDLKWKPPQEEALVSYLCGDKKFSEERVRSGIKRLQKGLKSGVQGRLDGFFKV 348
Score = 67.4 bits (163), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 28/51 (54%), Positives = 36/51 (70%)
Query: 409 LKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSTTTQGRLDSFFTI 459
LKW P E+ LV YLCGDK F+E+R+R+G K+L K + QGRLD FF +
Sbjct: 298 LKWKPPQEEALVSYLCGDKKFSEERVRSGIKRLQKGLKSGVQGRLDGFFKV 348
>gi|359487708|ref|XP_002278964.2| PREDICTED: flap endonuclease 1-like [Vitis vinifera]
Length = 384
Score = 179 bits (455), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 80/134 (59%), Positives = 107/134 (79%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVLE 120
AP EAEAQCAA+ K+GKVYA A+EDMD+LTFG+ LRH+ +RK+PV EF + K+LE
Sbjct: 156 APSEAEAQCAALCKSGKVYAVASEDMDSLTFGAPKFLRHLMDPSSRKIPVMEFDITKILE 215
Query: 121 GMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGW 180
+ L+ ++FIDLCIL GCDYCDSIRGIG + A++LI++H SIE ILENI+ ++Y +P+ W
Sbjct: 216 ELNLTMDQFIDLCILSGCDYCDSIRGIGGQTALKLIRQHGSIENILENINRERYQIPDDW 275
Query: 181 LYKEARELFRHPEV 194
Y+EAR LF+ P+V
Sbjct: 276 PYQEARRLFKEPQV 289
Score = 117 bits (293), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 61/112 (54%), Positives = 77/112 (68%), Gaps = 8/112 (7%)
Query: 304 ELVADVAPSSIRE-------SRKICIDASMSLYQFLIAVRSEGNQLMSVD-GEPTSHLMG 355
+L+AD AP +++E RKI IDASMS+YQFLI V G ++++ + GE TSHL G
Sbjct: 8 KLLADNAPKAMKEQKFESFFGRKIAIDASMSIYQFLIVVGRSGTEMLTNEAGEVTSHLQG 67
Query: 356 TFYRTIRLVEHGLKPIYVFDGKPPTLKSGELNKRMEKREDAQKALAKAQEQG 407
F RTIRL+E GLKP+YVFDGKPP LK EL KR +R DA + L +A E G
Sbjct: 68 MFSRTIRLLEAGLKPVYVFDGKPPDLKKQELAKRFSRRADATEDLTEALETG 119
Score = 99.8 bits (247), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 43/75 (57%), Positives = 61/75 (81%), Gaps = 1/75 (1%)
Query: 232 FIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGWLYKEAREL 291
FIDLCIL GCDYCDSIRGIG + A++LI++H SIE ILENI+ ++Y +P+ W Y+EAR L
Sbjct: 224 FIDLCILSGCDYCDSIRGIGGQTALKLIRQHGSIENILENINRERYQIPDDWPYQEARRL 283
Query: 292 FRHPEI-ADPETIEL 305
F+ P++ +D E +++
Sbjct: 284 FKEPQVFSDDEQLDI 298
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 23/53 (43%), Positives = 36/53 (67%)
Query: 405 EQGKLKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSTTTQGRLDSFF 457
EQ +KWS PDE+GL+ +L + F DR+ +K+ A++ ++QGRL+SFF
Sbjct: 294 EQLDIKWSAPDEEGLITFLVNENGFNSDRVTKAIEKIKTAKNKSSQGRLESFF 346
Score = 56.2 bits (134), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 35/51 (68%)
Query: 1 MTLKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSSTTQGRLDSFF 51
+ +KWS PDE+GL+ +L + F DR+ +K+ A++ ++QGRL+SFF
Sbjct: 296 LDIKWSAPDEEGLITFLVNENGFNSDRVTKAIEKIKTAKNKSSQGRLESFF 346
>gi|440633913|gb|ELR03832.1| flap endonuclease-1 [Geomyces destructans 20631-21]
Length = 395
Score = 179 bits (454), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 82/137 (59%), Positives = 107/137 (78%), Gaps = 3/137 (2%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVLE 120
AP EAEAQCA + +AGKVYA A+EDMD L F S IL+RH+TFSEARK P+QE H++KVLE
Sbjct: 155 APTEAEAQCAVLARAGKVYAAASEDMDTLCFDSPILIRHLTFSEARKEPIQEIHVDKVLE 214
Query: 121 GMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDT---KKYTVP 177
G+ + ++F+DLCILLGCDY D I IGP A+++I+EH S+EK++E I+ KYT+P
Sbjct: 215 GLGMDRKQFVDLCILLGCDYLDPIPKIGPNTALKMIREHGSLEKVVEWINNDGKNKYTIP 274
Query: 178 EGWLYKEARELFRHPEV 194
E W Y +ARELF +P+V
Sbjct: 275 EDWPYADARELFFNPDV 291
Score = 132 bits (332), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 62/110 (56%), Positives = 82/110 (74%), Gaps = 7/110 (6%)
Query: 305 LVADVAPSSIRES-------RKICIDASMSLYQFLIAVRSEGNQLMSVDGEPTSHLMGTF 357
++ D AP +I+E RK+ IDASMS+Y FLIAVRSEG QLM+ GE TSHL+G F
Sbjct: 9 IIRDEAPQAIKEGEIKNQFGRKVAIDASMSIYSFLIAVRSEGQQLMNESGETTSHLLGMF 68
Query: 358 YRTIRLVEHGLKPIYVFDGKPPTLKSGELNKRMEKREDAQKALAKAQEQG 407
YRT+R+V++G+KP+YVFDG PP LKSGEL KR ++ +A + L +A+E G
Sbjct: 69 YRTLRIVDNGIKPVYVFDGAPPKLKSGELAKRFARKAEATEGLEEAKETG 118
Score = 87.4 bits (215), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 38/69 (55%), Positives = 52/69 (75%), Gaps = 3/69 (4%)
Query: 232 FIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDT---KKYTVPEGWLYKEA 288
F+DLCILLGCDY D I IGP A+++I+EH S+EK++E I+ KYT+PE W Y +A
Sbjct: 223 FVDLCILLGCDYLDPIPKIGPNTALKMIREHGSLEKVVEWINNDGKNKYTIPEDWPYADA 282
Query: 289 RELFRHPEI 297
RELF +P++
Sbjct: 283 RELFFNPDV 291
Score = 52.8 bits (125), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 22/49 (44%), Positives = 31/49 (63%)
Query: 3 LKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSSTTQGRLDSFF 51
KW PD +GL+K+L + F+E+R+R G KL K S+ Q RL+ FF
Sbjct: 301 FKWEQPDVEGLIKFLVVENAFSEERVRGGIAKLQKNLKSSQQARLEGFF 349
Score = 51.6 bits (122), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/49 (42%), Positives = 31/49 (63%)
Query: 409 LKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSTTTQGRLDSFF 457
KW PD +GL+K+L + F+E+R+R G KL K ++ Q RL+ FF
Sbjct: 301 FKWEQPDVEGLIKFLVVENAFSEERVRGGIAKLQKNLKSSQQARLEGFF 349
>gi|296089863|emb|CBI39682.3| unnamed protein product [Vitis vinifera]
Length = 416
Score = 179 bits (453), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 80/134 (59%), Positives = 107/134 (79%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVLE 120
AP EAEAQCAA+ K+GKVYA A+EDMD+LTFG+ LRH+ +RK+PV EF + K+LE
Sbjct: 156 APSEAEAQCAALCKSGKVYAVASEDMDSLTFGAPKFLRHLMDPSSRKIPVMEFDITKILE 215
Query: 121 GMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGW 180
+ L+ ++FIDLCIL GCDYCDSIRGIG + A++LI++H SIE ILENI+ ++Y +P+ W
Sbjct: 216 ELNLTMDQFIDLCILSGCDYCDSIRGIGGQTALKLIRQHGSIENILENINRERYQIPDDW 275
Query: 181 LYKEARELFRHPEV 194
Y+EAR LF+ P+V
Sbjct: 276 PYQEARRLFKEPQV 289
Score = 116 bits (291), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 61/112 (54%), Positives = 77/112 (68%), Gaps = 8/112 (7%)
Query: 304 ELVADVAPSSIRE-------SRKICIDASMSLYQFLIAVRSEGNQLMSVD-GEPTSHLMG 355
+L+AD AP +++E RKI IDASMS+YQFLI V G ++++ + GE TSHL G
Sbjct: 8 KLLADNAPKAMKEQKFESFFGRKIAIDASMSIYQFLIVVGRSGTEMLTNEAGEVTSHLQG 67
Query: 356 TFYRTIRLVEHGLKPIYVFDGKPPTLKSGELNKRMEKREDAQKALAKAQEQG 407
F RTIRL+E GLKP+YVFDGKPP LK EL KR +R DA + L +A E G
Sbjct: 68 MFSRTIRLLEAGLKPVYVFDGKPPDLKKQELAKRFSRRADATEDLTEALETG 119
Score = 98.6 bits (244), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 43/75 (57%), Positives = 61/75 (81%), Gaps = 1/75 (1%)
Query: 232 FIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGWLYKEAREL 291
FIDLCIL GCDYCDSIRGIG + A++LI++H SIE ILENI+ ++Y +P+ W Y+EAR L
Sbjct: 224 FIDLCILSGCDYCDSIRGIGGQTALKLIRQHGSIENILENINRERYQIPDDWPYQEARRL 283
Query: 292 FRHPEI-ADPETIEL 305
F+ P++ +D E +++
Sbjct: 284 FKEPQVFSDDEQLDI 298
Score = 57.8 bits (138), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 23/53 (43%), Positives = 36/53 (67%)
Query: 405 EQGKLKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSTTTQGRLDSFF 457
EQ +KWS PDE+GL+ +L + F DR+ +K+ A++ ++QGRL+SFF
Sbjct: 294 EQLDIKWSAPDEEGLITFLVNENGFNSDRVTKAIEKIKTAKNKSSQGRLESFF 346
Score = 56.2 bits (134), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 35/51 (68%)
Query: 1 MTLKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSSTTQGRLDSFF 51
+ +KWS PDE+GL+ +L + F DR+ +K+ A++ ++QGRL+SFF
Sbjct: 296 LDIKWSAPDEEGLITFLVNENGFNSDRVTKAIEKIKTAKNKSSQGRLESFF 346
>gi|448098848|ref|XP_004199006.1| Piso0_002405 [Millerozyma farinosa CBS 7064]
gi|359380428|emb|CCE82669.1| Piso0_002405 [Millerozyma farinosa CBS 7064]
Length = 343
Score = 179 bits (453), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 83/146 (56%), Positives = 106/146 (72%), Gaps = 4/146 (2%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVLE 120
APCEAEAQCAA+ + GKV+A A+EDMD + + LLRH+T +EARKLP+ + KVLE
Sbjct: 120 APCEAEAQCAALARKGKVFAAASEDMDTICYEPPFLLRHLTVAEARKLPIDQIEYSKVLE 179
Query: 121 GMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILE----NIDTKKYTV 176
+E+ + FIDLCILLGCDYC++I+G+GP A +LIKEH S++KI+E N D KY V
Sbjct: 180 SLEMDKDTFIDLCILLGCDYCETIKGVGPVTAFKLIKEHGSLDKIVEYLSANPDKTKYKV 239
Query: 177 PEGWLYKEARELFRHPEVADPETIEF 202
PE W Y EARELF HPEV + + I
Sbjct: 240 PENWPYNEARELFLHPEVQNADDINL 265
Score = 103 bits (256), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 47/79 (59%), Positives = 59/79 (74%), Gaps = 4/79 (5%)
Query: 231 SFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILE----NIDTKKYTVPEGWLYK 286
+FIDLCILLGCDYC++I+G+GP A +LIKEH S++KI+E N D KY VPE W Y
Sbjct: 187 TFIDLCILLGCDYCETIKGVGPVTAFKLIKEHGSLDKIVEYLSANPDKTKYKVPENWPYN 246
Query: 287 EARELFRHPEIADPETIEL 305
EARELF HPE+ + + I L
Sbjct: 247 EARELFLHPEVQNADDINL 265
Score = 103 bits (256), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 48/86 (55%), Positives = 66/86 (76%), Gaps = 1/86 (1%)
Query: 326 MSLYQFLIAVR-SEGNQLMSVDGEPTSHLMGTFYRTIRLVEHGLKPIYVFDGKPPTLKSG 384
M LYQ+LIAVR +EG QL + +GE TSHL G FYRTIR+V++ +KP+YVFDGKPP LK G
Sbjct: 1 MCLYQYLIAVRQAEGQQLTNEEGETTSHLSGMFYRTIRMVDNNIKPVYVFDGKPPVLKGG 60
Query: 385 ELNKRMEKREDAQKALAKAQEQGKLK 410
EL KR+ ++EDA K + +++ ++
Sbjct: 61 ELEKRLLRKEDAIKQMENIKDEATVE 86
Score = 63.5 bits (153), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 26/53 (49%), Positives = 37/53 (69%)
Query: 1 MTLKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSSTTQGRLDSFFTI 53
+ LKW +PD +GL++Y+ K F+E+RIR+GA+KL K QGRLD FF +
Sbjct: 263 INLKWKEPDVEGLIEYMVKQKGFSEERIRSGAEKLKKGLKGGVQGRLDGFFQV 315
Score = 62.0 bits (149), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 26/51 (50%), Positives = 36/51 (70%)
Query: 409 LKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSTTTQGRLDSFFTI 459
LKW +PD +GL++Y+ K F+E+RIR+GA+KL K QGRLD FF +
Sbjct: 265 LKWKEPDVEGLIEYMVKQKGFSEERIRSGAEKLKKGLKGGVQGRLDGFFQV 315
>gi|358385848|gb|EHK23444.1| hypothetical protein TRIVIDRAFT_37094 [Trichoderma virens Gv29-8]
Length = 395
Score = 179 bits (453), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 82/137 (59%), Positives = 107/137 (78%), Gaps = 3/137 (2%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVLE 120
AP EAEAQCA + +AGKVYA A+EDMD L F + ILLRH+TFSE RK P+QE L+KVLE
Sbjct: 155 APTEAEAQCAVLARAGKVYAAASEDMDTLCFNTPILLRHLTFSEQRKEPIQEIRLDKVLE 214
Query: 121 GMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENID---TKKYTVP 177
G+ + ++F+DLCILLGCDY D + +GP A++LI+EH S+EK++E I+ KKYT+P
Sbjct: 215 GLNMERDQFVDLCILLGCDYLDPVPKVGPTTALKLIREHGSLEKVVEAIEKDPKKKYTLP 274
Query: 178 EGWLYKEARELFRHPEV 194
E W YK+ARELF +P+V
Sbjct: 275 EDWPYKDARELFFNPDV 291
Score = 133 bits (334), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 62/112 (55%), Positives = 85/112 (75%), Gaps = 7/112 (6%)
Query: 303 IELVADVAPSSIRES-------RKICIDASMSLYQFLIAVRSEGNQLMSVDGEPTSHLMG 355
++V + AP +I+E RK+ IDASMS+Y FLIAVRS+G QLM+ GE TSHLMG
Sbjct: 7 FQIVKEEAPDAIKEGEIKNQFGRKVAIDASMSIYSFLIAVRSDGQQLMNDSGETTSHLMG 66
Query: 356 TFYRTIRLVEHGLKPIYVFDGKPPTLKSGELNKRMEKREDAQKALAKAQEQG 407
FYRT+R+V++G+KP+YVFDG PP LKSGEL KR +++++A + L +A+E G
Sbjct: 67 MFYRTLRMVDNGIKPLYVFDGAPPKLKSGELAKRFQRKQEATEGLEEAKETG 118
Score = 90.1 bits (222), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 39/69 (56%), Positives = 54/69 (78%), Gaps = 3/69 (4%)
Query: 232 FIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENID---TKKYTVPEGWLYKEA 288
F+DLCILLGCDY D + +GP A++LI+EH S+EK++E I+ KKYT+PE W YK+A
Sbjct: 223 FVDLCILLGCDYLDPVPKVGPTTALKLIREHGSLEKVVEAIEKDPKKKYTLPEDWPYKDA 282
Query: 289 RELFRHPEI 297
RELF +P++
Sbjct: 283 RELFFNPDV 291
Score = 55.8 bits (133), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 23/49 (46%), Positives = 33/49 (67%)
Query: 3 LKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSSTTQGRLDSFF 51
KW PD +GLV++L +K F+EDR+R+G +L K S+ Q RL+ FF
Sbjct: 301 FKWDKPDMEGLVQFLVTEKGFSEDRVRSGGARLEKNLKSSQQARLEGFF 349
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 22/49 (44%), Positives = 33/49 (67%)
Query: 409 LKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSTTTQGRLDSFF 457
KW PD +GLV++L +K F+EDR+R+G +L K ++ Q RL+ FF
Sbjct: 301 FKWDKPDMEGLVQFLVTEKGFSEDRVRSGGARLEKNLKSSQQARLEGFF 349
>gi|145349446|ref|XP_001419144.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|317374919|sp|A4S1G4.1|FEN1_OSTLU RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|144579375|gb|ABO97437.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 389
Score = 179 bits (453), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 86/142 (60%), Positives = 106/142 (74%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVLE 120
APCEAEA CAAM KAG V+A ATEDMD LTF + L R++ +++ PV EF +KVL
Sbjct: 156 APCEAEASCAAMCKAGLVWAVATEDMDTLTFAAPRLARNLMAPKSQDKPVLEFDYDKVLA 215
Query: 121 GMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGW 180
G+ L+ E+FID+CIL GCDYCD+IRGIGPK A++LIKEH SIEKILE IDT+KY P+ W
Sbjct: 216 GLGLTPEQFIDMCILCGCDYCDTIRGIGPKTALKLIKEHGSIEKILEEIDTEKYPPPQDW 275
Query: 181 LYKEARELFRHPEVADPETIEF 202
+ ARELF++PEV D I
Sbjct: 276 DFAGARELFKNPEVMDTTGIAL 297
Score = 114 bits (285), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 65/141 (46%), Positives = 85/141 (60%), Gaps = 24/141 (17%)
Query: 167 ENIDTKKYTVPEGWLYKEARELFRHPEVADPETIEFIDLCILLGCDYCDSIRGIG--PKR 224
E++DT + P + AR L P+ D +EF DY + G+G P++
Sbjct: 179 EDMDTLTFAAP-----RLARNLM-APKSQDKPVLEF---------DYDKVLAGLGLTPEQ 223
Query: 225 AIELLYSFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGWL 284
FID+CIL GCDYCD+IRGIGPK A++LIKEH SIEKILE IDT+KY P+ W
Sbjct: 224 -------FIDMCILCGCDYCDTIRGIGPKTALKLIKEHGSIEKILEEIDTEKYPPPQDWD 276
Query: 285 YKEARELFRHPEIADPETIEL 305
+ ARELF++PE+ D I L
Sbjct: 277 FAGARELFKNPEVMDTTGIAL 297
Score = 99.0 bits (245), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 50/97 (51%), Positives = 65/97 (67%), Gaps = 8/97 (8%)
Query: 305 LVADVAPSSIRE-------SRKICIDASMSLYQFLIAVRSEG-NQLMSVDGEPTSHLMGT 356
L+ D AP +I+E R++ IDASM +YQF++ V +G QL + GE TSHL G
Sbjct: 9 LMRDNAPGAIKEQKFESYLDRRVAIDASMHIYQFMMVVGRQGEQQLTNEAGEVTSHLQGM 68
Query: 357 FYRTIRLVEHGLKPIYVFDGKPPTLKSGELNKRMEKR 393
RT R++E G+KPIYVFDGKPP +K GEL KR +KR
Sbjct: 69 LNRTCRMLEAGIKPIYVFDGKPPVMKGGELAKRKDKR 105
Score = 47.4 bits (111), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 33/52 (63%), Gaps = 1/52 (1%)
Query: 1 MTLKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKAR-SSTTQGRLDSFF 51
+ L W P+E+GL+ +L +K F E+R+R K+ KAR +Q RL+SFF
Sbjct: 295 IALSWKAPNEEGLIDFLVKEKQFNEERVRAVCAKVKKARQGKASQNRLESFF 346
Score = 46.6 bits (109), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 22/50 (44%), Positives = 32/50 (64%), Gaps = 1/50 (2%)
Query: 409 LKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKAR-STTTQGRLDSFF 457
L W P+E+GL+ +L +K F E+R+R K+ KAR +Q RL+SFF
Sbjct: 297 LSWKAPNEEGLIDFLVKEKQFNEERVRAVCAKVKKARQGKASQNRLESFF 346
>gi|261193829|ref|XP_002623320.1| DNA-repair protein rad2 [Ajellomyces dermatitidis SLH14081]
gi|239588925|gb|EEQ71568.1| DNA-repair protein rad2 [Ajellomyces dermatitidis SLH14081]
gi|239613756|gb|EEQ90743.1| DNA-repair protein rad2 [Ajellomyces dermatitidis ER-3]
Length = 406
Score = 179 bits (453), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 82/137 (59%), Positives = 107/137 (78%), Gaps = 3/137 (2%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVLE 120
AP EAEAQCA + +AGKVYA A+EDMD L F S ILLRH+TFSE RK P+ E HL++VLE
Sbjct: 166 APTEAEAQCAVLARAGKVYAAASEDMDTLCFDSPILLRHLTFSEQRKEPILEIHLDRVLE 225
Query: 121 GMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDT---KKYTVP 177
G+++ ++F+DLCILLGCDY D I +GP A++LI++H S+EK++E I + KKYT+P
Sbjct: 226 GLDMDRKQFVDLCILLGCDYLDPIPKVGPNTALKLIRDHGSLEKVVEAIQSDPKKKYTIP 285
Query: 178 EGWLYKEARELFRHPEV 194
E W YK+ARELF P+V
Sbjct: 286 EDWPYKDARELFFDPDV 302
Score = 112 bits (280), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 55/88 (62%), Positives = 67/88 (76%), Gaps = 3/88 (3%)
Query: 306 VADVAPSSIRESRKICIDASMSLYQFLIAVRSEGNQLMSVDGEPTSHLMGTFYRTIRLVE 365
VA V+ S S K+ ASMS+Y FL+AVRS+G QLMS GE TSHLMG FYRT+R+VE
Sbjct: 31 VAIVSTFSPVSSSKV---ASMSIYSFLVAVRSDGQQLMSETGETTSHLMGMFYRTLRIVE 87
Query: 366 HGLKPIYVFDGKPPTLKSGELNKRMEKR 393
+G+KP+YVFDG PP LKSGEL KR ++
Sbjct: 88 NGIKPVYVFDGAPPKLKSGELAKRFMRK 115
Score = 89.7 bits (221), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 39/69 (56%), Positives = 53/69 (76%), Gaps = 3/69 (4%)
Query: 232 FIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDT---KKYTVPEGWLYKEA 288
F+DLCILLGCDY D I +GP A++LI++H S+EK++E I + KKYT+PE W YK+A
Sbjct: 234 FVDLCILLGCDYLDPIPKVGPNTALKLIRDHGSLEKVVEAIQSDPKKKYTIPEDWPYKDA 293
Query: 289 RELFRHPEI 297
RELF P++
Sbjct: 294 RELFFDPDV 302
Score = 60.1 bits (144), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 29/60 (48%), Positives = 39/60 (65%), Gaps = 1/60 (1%)
Query: 409 LKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSTTTQGRLDSFF-TIRREEKRKS 467
KW PD +GLVK+L +K F+EDR+RNGA +L K T Q RL+ FF I + E+ K+
Sbjct: 312 FKWEAPDVEGLVKFLVEEKAFSEDRVRNGAARLQKNLKTAQQSRLEGFFKPIAKTEQEKA 371
Score = 60.1 bits (144), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 29/61 (47%), Positives = 39/61 (63%), Gaps = 1/61 (1%)
Query: 2 TLKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSSTTQGRLDSFF-TIRREEKRK 60
KW PD +GLVK+L +K F+EDR+RNGA +L K + Q RL+ FF I + E+ K
Sbjct: 311 NFKWEAPDVEGLVKFLVEEKAFSEDRVRNGAARLQKNLKTAQQSRLEGFFKPIAKTEQEK 370
Query: 61 A 61
A
Sbjct: 371 A 371
>gi|240273940|gb|EER37459.1| DNA repair protein RAD2 [Ajellomyces capsulatus H143]
Length = 519
Score = 179 bits (453), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 82/137 (59%), Positives = 107/137 (78%), Gaps = 3/137 (2%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVLE 120
AP EAEAQCA + +AGKVYA A+EDMD L F S ILLRH+TFSE RK P+ E HL++VLE
Sbjct: 279 APTEAEAQCAVLARAGKVYAAASEDMDTLCFDSPILLRHLTFSEQRKEPILEIHLDRVLE 338
Query: 121 GMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDT---KKYTVP 177
G+++ ++F+DLCILLGCDY D I +GP A++LI++H S+E+++E I + KKYT+P
Sbjct: 339 GLDMDRKQFVDLCILLGCDYLDPIPKVGPNTALKLIRDHGSLEQVVEAIKSDPKKKYTIP 398
Query: 178 EGWLYKEARELFRHPEV 194
E W YKEARELF P+V
Sbjct: 399 EDWPYKEARELFFDPDV 415
Score = 117 bits (293), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 54/97 (55%), Positives = 72/97 (74%), Gaps = 7/97 (7%)
Query: 304 ELVADVAPSSIRES-------RKICIDASMSLYQFLIAVRSEGNQLMSVDGEPTSHLMGT 356
+++ + AP +++ RK+ IDASMS+Y FLIAVRS+G QL S GE TSHLMG
Sbjct: 132 QIIQENAPDAVKAGEIKNHFGRKVAIDASMSIYSFLIAVRSDGQQLTSETGETTSHLMGM 191
Query: 357 FYRTIRLVEHGLKPIYVFDGKPPTLKSGELNKRMEKR 393
FYRT+R+V++G+KP+YVFDG PP LKSGEL KR ++
Sbjct: 192 FYRTLRIVDNGIKPVYVFDGAPPKLKSGELAKRFMRK 228
Score = 89.4 bits (220), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 39/69 (56%), Positives = 53/69 (76%), Gaps = 3/69 (4%)
Query: 232 FIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDT---KKYTVPEGWLYKEA 288
F+DLCILLGCDY D I +GP A++LI++H S+E+++E I + KKYT+PE W YKEA
Sbjct: 347 FVDLCILLGCDYLDPIPKVGPNTALKLIRDHGSLEQVVEAIKSDPKKKYTIPEDWPYKEA 406
Query: 289 RELFRHPEI 297
RELF P++
Sbjct: 407 RELFFDPDV 415
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/60 (46%), Positives = 38/60 (63%), Gaps = 1/60 (1%)
Query: 409 LKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSTTTQGRLDSFF-TIRREEKRKS 467
KW PD +GLVK+L +K F+EDR+RN A +L K T Q RL+ FF I + E+ K+
Sbjct: 425 FKWEAPDVEGLVKFLVEEKAFSEDRVRNAAARLQKNLKTAQQSRLEGFFKPIAKTEQEKA 484
Score = 57.8 bits (138), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/60 (46%), Positives = 38/60 (63%), Gaps = 1/60 (1%)
Query: 3 LKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSSTTQGRLDSFF-TIRREEKRKA 61
KW PD +GLVK+L +K F+EDR+RN A +L K + Q RL+ FF I + E+ KA
Sbjct: 425 FKWEAPDVEGLVKFLVEEKAFSEDRVRNAAARLQKNLKTAQQSRLEGFFKPIAKTEQEKA 484
>gi|365989632|ref|XP_003671646.1| hypothetical protein NDAI_0H02290 [Naumovozyma dairenensis CBS 421]
gi|343770419|emb|CCD26403.1| hypothetical protein NDAI_0H02290 [Naumovozyma dairenensis CBS 421]
Length = 384
Score = 179 bits (453), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 87/145 (60%), Positives = 111/145 (76%), Gaps = 5/145 (3%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVLE 120
AP EAEAQCA + K GKVYA A+EDMD L + + LLRH+TFSEA+K P+QE + E+VL+
Sbjct: 153 APGEAEAQCAELAKKGKVYAAASEDMDTLCYRTPYLLRHLTFSEAKKEPIQEINTEQVLQ 212
Query: 121 GMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDT-----KKYT 175
G+EL+ E+FIDL I+LGCDYC++IRGIGP A +LIKEH S+EKI+E I++ KK+
Sbjct: 213 GLELTLEQFIDLGIMLGCDYCENIRGIGPVTAFKLIKEHGSLEKIIEFIESDENTNKKWK 272
Query: 176 VPEGWLYKEARELFRHPEVADPETI 200
VPE W YKEARELF P++ D I
Sbjct: 273 VPENWPYKEARELFVTPDIIDGNQI 297
Score = 124 bits (312), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 61/111 (54%), Positives = 83/111 (74%), Gaps = 8/111 (7%)
Query: 305 LVADVAPSSIRES-------RKICIDASMSLYQFLIAVRS-EGNQLMSVDGEPTSHLMGT 356
++++ AP +IR+S RK+ IDASMSLYQFLIAVR +G QL + GE TSHLMG
Sbjct: 9 IISENAPLAIRKSDIKAFFGRKVAIDASMSLYQFLIAVRQQDGGQLTNDAGETTSHLMGM 68
Query: 357 FYRTIRLVEHGLKPIYVFDGKPPTLKSGELNKRMEKREDAQKALAKAQEQG 407
FYRT+R++++G+KP YVFDGKPP LKS EL+KR+ +R + +K A+A +Q
Sbjct: 69 FYRTLRMIDNGIKPCYVFDGKPPVLKSHELDKRIARRAETEKKFAEATDQA 119
Score = 98.2 bits (243), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 49/82 (59%), Positives = 59/82 (71%), Gaps = 5/82 (6%)
Query: 229 LYSFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDT-----KKYTVPEGW 283
L FIDL I+LGCDYC++IRGIGP A +LIKEH S+EKI+E I++ KK+ VPE W
Sbjct: 218 LEQFIDLGIMLGCDYCENIRGIGPVTAFKLIKEHGSLEKIIEFIESDENTNKKWKVPENW 277
Query: 284 LYKEARELFRHPEIADPETIEL 305
YKEARELF P+I D I L
Sbjct: 278 PYKEARELFVTPDIIDGNQITL 299
Score = 56.2 bits (134), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 23/53 (43%), Positives = 35/53 (66%)
Query: 1 MTLKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSSTTQGRLDSFFTI 53
+TLKW P ED L+++LC +K F E+R++ G K+L K + Q RL+ FF +
Sbjct: 297 ITLKWEPPKEDALIEFLCKEKLFNEERVKAGIKRLQKGLKAGVQTRLEGFFKV 349
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 23/54 (42%), Positives = 33/54 (61%)
Query: 406 QGKLKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSTTTQGRLDSFFTI 459
Q LKW P ED L+++LC +K F E+R++ G K+L K Q RL+ FF +
Sbjct: 296 QITLKWEPPKEDALIEFLCKEKLFNEERVKAGIKRLQKGLKAGVQTRLEGFFKV 349
>gi|255713324|ref|XP_002552944.1| KLTH0D05126p [Lachancea thermotolerans]
gi|317374904|sp|C5DGG4.1|FEN1_LACTC RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|238934324|emb|CAR22506.1| KLTH0D05126p [Lachancea thermotolerans CBS 6340]
Length = 385
Score = 178 bits (452), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 86/159 (54%), Positives = 116/159 (72%), Gaps = 14/159 (8%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVLE 120
APCEAEAQCA + KAGKVYA A+EDMD L + + LLRH+TFSEA+K P+ E + E +L+
Sbjct: 153 APCEAEAQCAELAKAGKVYAAASEDMDTLCYRTPFLLRHLTFSEAKKEPIHEINTEILLQ 212
Query: 121 GMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDT----KKYTV 176
G+ELS E+FIDL I+LGCDYCDSIRG+GP A++LIKEH+++E I+E I++ K+ V
Sbjct: 213 GLELSIEQFIDLGIMLGCDYCDSIRGVGPVTALKLIKEHKTLENIVEYIESGQANNKWKV 272
Query: 177 PEGWLYKEARELFRHPEV----------ADPETIEFIDL 205
PE W +KEAR+LF P+V ++P+ E +D
Sbjct: 273 PENWPFKEARQLFLDPDVVKGSEVDLKWSEPQEQELVDF 311
Score = 120 bits (301), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 63/115 (54%), Positives = 84/115 (73%), Gaps = 9/115 (7%)
Query: 305 LVADVAPSSIRES-------RKICIDASMSLYQFLIAVRSE-GNQLMSVDGEPTSHLMGT 356
++++ PS++R+S RK+ IDASMSLYQFLIAVR + G QL S GE TSHLMG
Sbjct: 9 IISEHVPSAVRKSEIKNFFGRKVAIDASMSLYQFLIAVRQQDGVQLASESGETTSHLMGI 68
Query: 357 FYRTIRLVEHGLKPIYVFDGKPPTLKSGELNKRMEKREDAQKALAKAQEQG-KLK 410
FYRT+R++++G+KP YVFDGKPP LKS EL+KR +R ++ L +A E+ KLK
Sbjct: 69 FYRTLRMIDNGIKPCYVFDGKPPVLKSHELSKRSARRATTEEKLKEAVEEAEKLK 123
Score = 94.0 bits (232), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 77/224 (34%), Positives = 107/224 (47%), Gaps = 51/224 (22%)
Query: 105 ARKLPVQEFHLEKVLEGMELSHE------------EFIDLCILLGCDYCDSIRGIGPKRA 152
AR+ +E E V E +L HE E L L+G Y ++ P A
Sbjct: 103 ARRATTEEKLKEAVEEAEKLKHERRLVKVTPEHNEEAKKLLRLMGLPYVEA-----PCEA 157
Query: 153 ----IELIKEHRSIEKILENIDTKKYTVPEGWLYKEARELFRHPEV--ADPETIEFIDLC 206
EL K + E++DT Y P L RH A E I I+
Sbjct: 158 EAQCAELAKAGKVYAAASEDMDTLCYRTPF---------LLRHLTFSEAKKEPIHEINTE 208
Query: 207 ILLGCDYCDSIRGIGPKRAIEL-LYSFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSI 265
ILL + +EL + FIDL I+LGCDYCDSIRG+GP A++LIKEH+++
Sbjct: 209 ILL--------------QGLELSIEQFIDLGIMLGCDYCDSIRGVGPVTALKLIKEHKTL 254
Query: 266 EKILENIDT----KKYTVPEGWLYKEARELFRHPEIADPETIEL 305
E I+E I++ K+ VPE W +KEAR+LF P++ ++L
Sbjct: 255 ENIVEYIESGQANNKWKVPENWPFKEARQLFLDPDVVKGSEVDL 298
Score = 65.1 bits (157), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 34/76 (44%), Positives = 48/76 (63%), Gaps = 4/76 (5%)
Query: 3 LKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSSTTQGRLDSFFTIRREEKRK-A 61
LKWS+P E LV ++C +K F E+RIR+G K+L K + QGRLD FF ++ + K + A
Sbjct: 298 LKWSEPQEQELVDFMCKEKGFNEERIRSGIKRLQKGLKTGVQGRLDGFFKVKPKNKEQLA 357
Query: 62 PCEAEAQCAAMVKAGK 77
A+A+ KAGK
Sbjct: 358 AANAKAKS---TKAGK 370
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 28/56 (50%), Positives = 38/56 (67%)
Query: 409 LKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSTTTQGRLDSFFTIRREEK 464
LKWS+P E LV ++C +K F E+RIR+G K+L K T QGRLD FF ++ + K
Sbjct: 298 LKWSEPQEQELVDFMCKEKGFNEERIRSGIKRLQKGLKTGVQGRLDGFFKVKPKNK 353
>gi|302900157|ref|XP_003048206.1| predicted protein [Nectria haematococca mpVI 77-13-4]
gi|317374915|sp|C7Z125.1|FEN1_NECH7 RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|256729138|gb|EEU42493.1| predicted protein [Nectria haematococca mpVI 77-13-4]
Length = 395
Score = 178 bits (452), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 86/144 (59%), Positives = 109/144 (75%), Gaps = 6/144 (4%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVLE 120
AP EAEAQCA + +AGKVYA A+EDMD L F S ILLRH+TFSE RK P+QE HLEKVLE
Sbjct: 155 APTEAEAQCAVLAQAGKVYAAASEDMDTLCFNSPILLRHLTFSEQRKEPIQEIHLEKVLE 214
Query: 121 GMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENID---TKKYTVP 177
G+ + ++F+DLCILLGCDY D I +GP A++LI++H S+EKI+E ++ KKY +P
Sbjct: 215 GLGMERKQFVDLCILLGCDYLDPIPKVGPTTALKLIRDHGSLEKIVEAMEKDPKKKYVLP 274
Query: 178 EGWLYKEARELFRHPEVA---DPE 198
E W YK+AR+LF P+V DPE
Sbjct: 275 EDWPYKDARDLFFEPDVRKADDPE 298
Score = 132 bits (333), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 61/112 (54%), Positives = 85/112 (75%), Gaps = 7/112 (6%)
Query: 303 IELVADVAPSSIRES-------RKICIDASMSLYQFLIAVRSEGNQLMSVDGEPTSHLMG 355
+++ + AP +I+E RK+ IDASMS+Y FLIAVRS+G QLM+ GE TSHLMG
Sbjct: 7 FQIIKEEAPDAIKEGEIKNQFGRKVAIDASMSIYSFLIAVRSDGQQLMNDSGETTSHLMG 66
Query: 356 TFYRTIRLVEHGLKPIYVFDGKPPTLKSGELNKRMEKREDAQKALAKAQEQG 407
FYRT+R+V++G+KP+YVFDG PP LKSGEL KR +++++A + L +A+E G
Sbjct: 67 MFYRTLRMVDNGIKPLYVFDGAPPKLKSGELAKRFQRKQEATEGLEEAKETG 118
Score = 85.9 bits (211), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 43/91 (47%), Positives = 61/91 (67%), Gaps = 11/91 (12%)
Query: 217 IRGIGPKRAIELLYSFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENID--- 273
+ G+G +R F+DLCILLGCDY D I +GP A++LI++H S+EKI+E ++
Sbjct: 213 LEGLGMERK-----QFVDLCILLGCDYLDPIPKVGPTTALKLIRDHGSLEKIVEAMEKDP 267
Query: 274 TKKYTVPEGWLYKEARELFRHPEIA---DPE 301
KKY +PE W YK+AR+LF P++ DPE
Sbjct: 268 KKKYVLPEDWPYKDARDLFFEPDVRKADDPE 298
Score = 56.2 bits (134), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 23/49 (46%), Positives = 34/49 (69%)
Query: 3 LKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSSTTQGRLDSFF 51
+KW PD +GLV++L +K F+EDR+R+G +L K S+ Q RL+ FF
Sbjct: 301 VKWEKPDMEGLVQFLVTEKGFSEDRVRSGGARLEKNLKSSQQARLEGFF 349
Score = 55.5 bits (132), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 22/49 (44%), Positives = 34/49 (69%)
Query: 409 LKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSTTTQGRLDSFF 457
+KW PD +GLV++L +K F+EDR+R+G +L K ++ Q RL+ FF
Sbjct: 301 VKWEKPDMEGLVQFLVTEKGFSEDRVRSGGARLEKNLKSSQQARLEGFF 349
>gi|317374933|sp|C5GPA7.2|FEN1_AJEDR RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|317374934|sp|C5JVG7.2|FEN1_AJEDS RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
Length = 395
Score = 178 bits (452), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 82/137 (59%), Positives = 107/137 (78%), Gaps = 3/137 (2%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVLE 120
AP EAEAQCA + +AGKVYA A+EDMD L F S ILLRH+TFSE RK P+ E HL++VLE
Sbjct: 155 APTEAEAQCAVLARAGKVYAAASEDMDTLCFDSPILLRHLTFSEQRKEPILEIHLDRVLE 214
Query: 121 GMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDT---KKYTVP 177
G+++ ++F+DLCILLGCDY D I +GP A++LI++H S+EK++E I + KKYT+P
Sbjct: 215 GLDMDRKQFVDLCILLGCDYLDPIPKVGPNTALKLIRDHGSLEKVVEAIQSDPKKKYTIP 274
Query: 178 EGWLYKEARELFRHPEV 194
E W YK+ARELF P+V
Sbjct: 275 EDWPYKDARELFFDPDV 291
Score = 120 bits (302), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 55/97 (56%), Positives = 73/97 (75%), Gaps = 7/97 (7%)
Query: 304 ELVADVAPSSIRES-------RKICIDASMSLYQFLIAVRSEGNQLMSVDGEPTSHLMGT 356
+++ + AP +++ RK+ IDASMS+Y FL+AVRS+G QLMS GE TSHLMG
Sbjct: 8 QVIQENAPDAVKAGEIKNHFGRKVAIDASMSIYSFLVAVRSDGQQLMSETGETTSHLMGM 67
Query: 357 FYRTIRLVEHGLKPIYVFDGKPPTLKSGELNKRMEKR 393
FYRT+R+VE+G+KP+YVFDG PP LKSGEL KR ++
Sbjct: 68 FYRTLRIVENGIKPVYVFDGAPPKLKSGELAKRFMRK 104
Score = 89.7 bits (221), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 39/69 (56%), Positives = 53/69 (76%), Gaps = 3/69 (4%)
Query: 232 FIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDT---KKYTVPEGWLYKEA 288
F+DLCILLGCDY D I +GP A++LI++H S+EK++E I + KKYT+PE W YK+A
Sbjct: 223 FVDLCILLGCDYLDPIPKVGPNTALKLIRDHGSLEKVVEAIQSDPKKKYTIPEDWPYKDA 282
Query: 289 RELFRHPEI 297
RELF P++
Sbjct: 283 RELFFDPDV 291
Score = 59.7 bits (143), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 29/60 (48%), Positives = 39/60 (65%), Gaps = 1/60 (1%)
Query: 409 LKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSTTTQGRLDSFF-TIRREEKRKS 467
KW PD +GLVK+L +K F+EDR+RNGA +L K T Q RL+ FF I + E+ K+
Sbjct: 301 FKWEAPDVEGLVKFLVEEKAFSEDRVRNGAARLQKNLKTAQQSRLEGFFKPIAKTEQEKA 360
Score = 59.7 bits (143), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 29/61 (47%), Positives = 39/61 (63%), Gaps = 1/61 (1%)
Query: 2 TLKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSSTTQGRLDSFF-TIRREEKRK 60
KW PD +GLVK+L +K F+EDR+RNGA +L K + Q RL+ FF I + E+ K
Sbjct: 300 NFKWEAPDVEGLVKFLVEEKAFSEDRVRNGAARLQKNLKTAQQSRLEGFFKPIAKTEQEK 359
Query: 61 A 61
A
Sbjct: 360 A 360
>gi|254567327|ref|XP_002490774.1| 5' to 3' exonuclease, 5' flap endonuclease [Komagataella pastoris
GS115]
gi|317376166|sp|C4QZ20.1|FEN1_PICPG RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|238030570|emb|CAY68494.1| 5' to 3' exonuclease, 5' flap endonuclease [Komagataella pastoris
GS115]
gi|328351158|emb|CCA37558.1| flap endonuclease-1 [Komagataella pastoris CBS 7435]
Length = 373
Score = 178 bits (452), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 85/137 (62%), Positives = 103/137 (75%), Gaps = 3/137 (2%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVLE 120
APCEAEAQCA + K GKVYA A+EDMD L + + LLRHMT +EARKLPV E KV+E
Sbjct: 156 APCEAEAQCAELAKGGKVYAAASEDMDTLCYETPYLLRHMTTAEARKLPVTEIDYAKVME 215
Query: 121 GMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTK---KYTVP 177
G+E+ +FIDLCILLGCDYC++I+G+GP A +LIKEH SIEK++E I+ K +P
Sbjct: 216 GLEMELPQFIDLCILLGCDYCETIKGVGPVTAFKLIKEHGSIEKVVEAIENNPKSKQKIP 275
Query: 178 EGWLYKEARELFRHPEV 194
E W Y EARELF HPEV
Sbjct: 276 ENWPYNEARELFLHPEV 292
Score = 120 bits (302), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 62/113 (54%), Positives = 79/113 (69%), Gaps = 8/113 (7%)
Query: 305 LVADVAPSSIRES-------RKICIDASMSLYQFLIAVRS-EGNQLMSVDGEPTSHLMGT 356
L+ + +P + R RK+ IDASM LYQFLIAVR +G QL + +GE TSHLMG
Sbjct: 9 LINEHSPKAFRNGEMKTFFGRKVAIDASMCLYQFLIAVRQQDGQQLANEEGETTSHLMGF 68
Query: 357 FYRTIRLVEHGLKPIYVFDGKPPTLKSGELNKRMEKREDAQKALAKAQEQGKL 409
FYRTIR+V +G+KP YVFDGKPP LK GEL KR+++RE+A+K +E G L
Sbjct: 69 FYRTIRMVGYGIKPCYVFDGKPPVLKGGELEKRLKRREEAEKQRLDMKETGTL 121
Score = 100 bits (248), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 68/181 (37%), Positives = 90/181 (49%), Gaps = 32/181 (17%)
Query: 132 LCILLGCDYCDSIRGIGPKRA----IELIKEHRSIEKILENIDTKKYTVPEGWLYKEARE 187
L L+G Y D+ P A EL K + E++DT Y P
Sbjct: 145 LLELMGIPYVDA-----PCEAEAQCAELAKGGKVYAAASEDMDTLCYETPY--------- 190
Query: 188 LFRHPEVADPETIEFIDLCILLGCDYCDSIRGIGPKRAIELLYSFIDLCILLGCDYCDSI 247
L RH A+ + ++ DY + G+ + L FIDLCILLGCDYC++I
Sbjct: 191 LLRHMTTAEARKLPVTEI------DYAKVMEGLEME-----LPQFIDLCILLGCDYCETI 239
Query: 248 RGIGPKRAIELIKEHRSIEKILENIDTK---KYTVPEGWLYKEARELFRHPEIADPETIE 304
+G+GP A +LIKEH SIEK++E I+ K +PE W Y EARELF HPE+ E
Sbjct: 240 KGVGPVTAFKLIKEHGSIEKVVEAIENNPKSKQKIPENWPYNEARELFLHPEVIPASECE 299
Query: 305 L 305
L
Sbjct: 300 L 300
Score = 64.7 bits (156), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 30/61 (49%), Positives = 42/61 (68%), Gaps = 3/61 (4%)
Query: 408 KLKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSTTTQGRLDSFFTIRR---EEK 464
+L+W +PDE+ LV Y+ F+E RIR+GA KL K+ T TQGRLD FF +++ EEK
Sbjct: 299 ELEWKEPDEEALVDYMVRQHGFSEQRIRDGASKLRKSLKTGTQGRLDKFFVVKKRPAEEK 358
Query: 465 R 465
+
Sbjct: 359 K 359
Score = 63.2 bits (152), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 29/60 (48%), Positives = 41/60 (68%), Gaps = 3/60 (5%)
Query: 3 LKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSSTTQGRLDSFFTIRR---EEKR 59
L+W +PDE+ LV Y+ F+E RIR+GA KL K+ + TQGRLD FF +++ EEK+
Sbjct: 300 LEWKEPDEEALVDYMVRQHGFSEQRIRDGASKLRKSLKTGTQGRLDKFFVVKKRPAEEKK 359
>gi|325094624|gb|EGC47934.1| DNA repair protein RAD2 [Ajellomyces capsulatus H88]
Length = 359
Score = 178 bits (451), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 82/137 (59%), Positives = 107/137 (78%), Gaps = 3/137 (2%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVLE 120
AP EAEAQCA + +AGKVYA A+EDMD L F S ILLRH+TFSE RK P+ E HL++VLE
Sbjct: 119 APTEAEAQCAVLARAGKVYAAASEDMDTLCFDSPILLRHLTFSEQRKEPILEIHLDRVLE 178
Query: 121 GMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDT---KKYTVP 177
G+++ ++F+DLCILLGCDY D I +GP A++LI++H S+E+++E I + KKYT+P
Sbjct: 179 GLDMDRKQFVDLCILLGCDYLDPIPKVGPNTALKLIRDHGSLEQVVEAIKSDPKKKYTIP 238
Query: 178 EGWLYKEARELFRHPEV 194
E W YKEARELF P+V
Sbjct: 239 EDWPYKEARELFFDPDV 255
Score = 104 bits (259), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 46/68 (67%), Positives = 56/68 (82%)
Query: 326 MSLYQFLIAVRSEGNQLMSVDGEPTSHLMGTFYRTIRLVEHGLKPIYVFDGKPPTLKSGE 385
MS+Y FLIAVRS+G QL S GE TSHLMG FYRT+R+V++G+KP+YVFDG PP LKSGE
Sbjct: 1 MSIYSFLIAVRSDGQQLTSETGETTSHLMGMFYRTLRIVDNGIKPVYVFDGAPPKLKSGE 60
Query: 386 LNKRMEKR 393
L KR ++
Sbjct: 61 LAKRFMRK 68
Score = 89.4 bits (220), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 39/69 (56%), Positives = 53/69 (76%), Gaps = 3/69 (4%)
Query: 232 FIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDT---KKYTVPEGWLYKEA 288
F+DLCILLGCDY D I +GP A++LI++H S+E+++E I + KKYT+PE W YKEA
Sbjct: 187 FVDLCILLGCDYLDPIPKVGPNTALKLIRDHGSLEQVVEAIKSDPKKKYTIPEDWPYKEA 246
Query: 289 RELFRHPEI 297
RELF P++
Sbjct: 247 RELFFDPDV 255
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/60 (46%), Positives = 38/60 (63%), Gaps = 1/60 (1%)
Query: 409 LKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSTTTQGRLDSFF-TIRREEKRKS 467
KW PD +GLVK+L +K F+EDR+RN A +L K T Q RL+ FF I + E+ K+
Sbjct: 265 FKWEAPDVEGLVKFLVEEKAFSEDRVRNAAARLQKNLKTAQQSRLEGFFKPIAKTEQEKA 324
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/60 (46%), Positives = 38/60 (63%), Gaps = 1/60 (1%)
Query: 3 LKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSSTTQGRLDSFF-TIRREEKRKA 61
KW PD +GLVK+L +K F+EDR+RN A +L K + Q RL+ FF I + E+ KA
Sbjct: 265 FKWEAPDVEGLVKFLVEEKAFSEDRVRNAAARLQKNLKTAQQSRLEGFFKPIAKTEQEKA 324
>gi|317374936|sp|C6HQJ2.2|FEN1_AJECH RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
Length = 395
Score = 178 bits (451), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 82/137 (59%), Positives = 107/137 (78%), Gaps = 3/137 (2%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVLE 120
AP EAEAQCA + +AGKVYA A+EDMD L F S ILLRH+TFSE RK P+ E HL++VLE
Sbjct: 155 APTEAEAQCAVLARAGKVYAAASEDMDTLCFDSPILLRHLTFSEQRKEPILEIHLDRVLE 214
Query: 121 GMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDT---KKYTVP 177
G+++ ++F+DLCILLGCDY D I +GP A++LI++H S+E+++E I + KKYT+P
Sbjct: 215 GLDMDRKQFVDLCILLGCDYLDPIPKVGPNTALKLIRDHGSLEQVVEAIKSDPKKKYTIP 274
Query: 178 EGWLYKEARELFRHPEV 194
E W YKEARELF P+V
Sbjct: 275 EDWPYKEARELFFDPDV 291
Score = 118 bits (295), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 54/97 (55%), Positives = 72/97 (74%), Gaps = 7/97 (7%)
Query: 304 ELVADVAPSSIRES-------RKICIDASMSLYQFLIAVRSEGNQLMSVDGEPTSHLMGT 356
+++ + AP +++ RK+ IDASMS+Y FLIAVRS+G QL S GE TSHLMG
Sbjct: 8 QIIQENAPDAVKAGEIKNHFGRKVAIDASMSIYSFLIAVRSDGQQLTSETGETTSHLMGM 67
Query: 357 FYRTIRLVEHGLKPIYVFDGKPPTLKSGELNKRMEKR 393
FYRT+R+V++G+KP+YVFDG PP LKSGEL KR ++
Sbjct: 68 FYRTLRIVDNGIKPVYVFDGAPPKLKSGELAKRFMRK 104
Score = 89.4 bits (220), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 39/69 (56%), Positives = 53/69 (76%), Gaps = 3/69 (4%)
Query: 232 FIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDT---KKYTVPEGWLYKEA 288
F+DLCILLGCDY D I +GP A++LI++H S+E+++E I + KKYT+PE W YKEA
Sbjct: 223 FVDLCILLGCDYLDPIPKVGPNTALKLIRDHGSLEQVVEAIKSDPKKKYTIPEDWPYKEA 282
Query: 289 RELFRHPEI 297
RELF P++
Sbjct: 283 RELFFDPDV 291
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/60 (46%), Positives = 38/60 (63%), Gaps = 1/60 (1%)
Query: 409 LKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSTTTQGRLDSFF-TIRREEKRKS 467
KW PD +GLVK+L +K F+EDR+RN A +L K T Q RL+ FF I + E+ K+
Sbjct: 301 FKWEAPDVEGLVKFLVEEKAFSEDRVRNAAARLQKNLKTAQQSRLEGFFKPIAKTEQEKA 360
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/60 (46%), Positives = 38/60 (63%), Gaps = 1/60 (1%)
Query: 3 LKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSSTTQGRLDSFF-TIRREEKRKA 61
KW PD +GLVK+L +K F+EDR+RN A +L K + Q RL+ FF I + E+ KA
Sbjct: 301 FKWEAPDVEGLVKFLVEEKAFSEDRVRNAAARLQKNLKTAQQSRLEGFFKPIAKTEQEKA 360
>gi|225555317|gb|EEH03609.1| DNA-repair protein rad2 [Ajellomyces capsulatus G186AR]
Length = 359
Score = 178 bits (451), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 82/137 (59%), Positives = 107/137 (78%), Gaps = 3/137 (2%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVLE 120
AP EAEAQCA + +AGKVYA A+EDMD L F S ILLRH+TFSE RK P+ E HL++VLE
Sbjct: 119 APTEAEAQCAVLARAGKVYAAASEDMDTLCFDSPILLRHLTFSEQRKEPILEIHLDRVLE 178
Query: 121 GMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDT---KKYTVP 177
G+++ ++F+DLCILLGCDY D I +GP A++LI++H S+E+++E I + KKYT+P
Sbjct: 179 GLDMDRKQFVDLCILLGCDYLDPIPKVGPNTALKLIRDHGSLEQVVEAIKSDPKKKYTIP 238
Query: 178 EGWLYKEARELFRHPEV 194
E W YKEARELF P+V
Sbjct: 239 EDWPYKEARELFFDPDV 255
Score = 104 bits (259), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 46/68 (67%), Positives = 56/68 (82%)
Query: 326 MSLYQFLIAVRSEGNQLMSVDGEPTSHLMGTFYRTIRLVEHGLKPIYVFDGKPPTLKSGE 385
MS+Y FLIAVRS+G QL S GE TSHLMG FYRT+R+V++G+KP+YVFDG PP LKSGE
Sbjct: 1 MSIYSFLIAVRSDGQQLTSETGETTSHLMGMFYRTLRIVDNGIKPVYVFDGAPPKLKSGE 60
Query: 386 LNKRMEKR 393
L KR ++
Sbjct: 61 LAKRFMRK 68
Score = 89.4 bits (220), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 39/69 (56%), Positives = 53/69 (76%), Gaps = 3/69 (4%)
Query: 232 FIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDT---KKYTVPEGWLYKEA 288
F+DLCILLGCDY D I +GP A++LI++H S+E+++E I + KKYT+PE W YKEA
Sbjct: 187 FVDLCILLGCDYLDPIPKVGPNTALKLIRDHGSLEQVVEAIKSDPKKKYTIPEDWPYKEA 246
Query: 289 RELFRHPEI 297
RELF P++
Sbjct: 247 RELFFDPDV 255
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/60 (46%), Positives = 38/60 (63%), Gaps = 1/60 (1%)
Query: 409 LKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSTTTQGRLDSFF-TIRREEKRKS 467
KW PD +GLVK+L +K F+EDR+RN A +L K T Q RL+ FF I + E+ K+
Sbjct: 265 FKWEAPDVEGLVKFLVEEKAFSEDRVRNAAARLQKNLKTAQQSRLEGFFKPIAKTEQEKA 324
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/60 (46%), Positives = 38/60 (63%), Gaps = 1/60 (1%)
Query: 3 LKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSSTTQGRLDSFF-TIRREEKRKA 61
KW PD +GLVK+L +K F+EDR+RN A +L K + Q RL+ FF I + E+ KA
Sbjct: 265 FKWEAPDVEGLVKFLVEEKAFSEDRVRNAAARLQKNLKTAQQSRLEGFFKPIAKTEQEKA 324
>gi|154286840|ref|XP_001544215.1| flap endonuclease [Ajellomyces capsulatus NAm1]
gi|317374874|sp|A6QV55.1|FEN1_AJECN RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|150407856|gb|EDN03397.1| flap endonuclease [Ajellomyces capsulatus NAm1]
Length = 395
Score = 178 bits (451), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 82/137 (59%), Positives = 107/137 (78%), Gaps = 3/137 (2%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVLE 120
AP EAEAQCA + +AGKVYA A+EDMD L F S ILLRH+TFSE RK P+ E HL++VLE
Sbjct: 155 APTEAEAQCAVLARAGKVYAAASEDMDTLCFDSPILLRHLTFSEQRKEPILEIHLDRVLE 214
Query: 121 GMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDT---KKYTVP 177
G+++ ++F+DLCILLGCDY D I +GP A++LI++H S+E+++E I + KKYT+P
Sbjct: 215 GLDMDRKQFVDLCILLGCDYLDPIPKVGPNTALKLIRDHGSLEQVVEAIKSDPKKKYTIP 274
Query: 178 EGWLYKEARELFRHPEV 194
E W YKEARELF P+V
Sbjct: 275 EDWPYKEARELFFDPDV 291
Score = 117 bits (294), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 54/97 (55%), Positives = 72/97 (74%), Gaps = 7/97 (7%)
Query: 304 ELVADVAPSSIRES-------RKICIDASMSLYQFLIAVRSEGNQLMSVDGEPTSHLMGT 356
+++ + AP +++ RK+ IDASMS+Y FLIAVRS+G QL S GE TSHLMG
Sbjct: 8 QIIQENAPDAVKAGEIKNHFGRKVAIDASMSIYSFLIAVRSDGQQLTSETGETTSHLMGM 67
Query: 357 FYRTIRLVEHGLKPIYVFDGKPPTLKSGELNKRMEKR 393
FYRT+R+V++G+KP+YVFDG PP LKSGEL KR ++
Sbjct: 68 FYRTLRIVDNGIKPVYVFDGAPPKLKSGELAKRFMRK 104
Score = 89.4 bits (220), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 39/69 (56%), Positives = 53/69 (76%), Gaps = 3/69 (4%)
Query: 232 FIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDT---KKYTVPEGWLYKEA 288
F+DLCILLGCDY D I +GP A++LI++H S+E+++E I + KKYT+PE W YKEA
Sbjct: 223 FVDLCILLGCDYLDPIPKVGPNTALKLIRDHGSLEQVVEAIKSDPKKKYTIPEDWPYKEA 282
Query: 289 RELFRHPEI 297
RELF P++
Sbjct: 283 RELFFDPDV 291
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/60 (46%), Positives = 38/60 (63%), Gaps = 1/60 (1%)
Query: 409 LKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSTTTQGRLDSFF-TIRREEKRKS 467
KW PD +GLVK+L +K F+EDR+RN A +L K T Q RL+ FF I + E+ K+
Sbjct: 301 FKWEAPDVEGLVKFLVEEKAFSEDRVRNAAARLQKNLKTAQQSRLEGFFKPIAKTEQEKA 360
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/60 (46%), Positives = 38/60 (63%), Gaps = 1/60 (1%)
Query: 3 LKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSSTTQGRLDSFF-TIRREEKRKA 61
KW PD +GLVK+L +K F+EDR+RN A +L K + Q RL+ FF I + E+ KA
Sbjct: 301 FKWEAPDVEGLVKFLVEEKAFSEDRVRNAAARLQKNLKTAQQSRLEGFFKPIAKTEQEKA 360
>gi|327350064|gb|EGE78921.1| DNA-repair protein rad2 [Ajellomyces dermatitidis ATCC 18188]
Length = 402
Score = 178 bits (451), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 82/137 (59%), Positives = 107/137 (78%), Gaps = 3/137 (2%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVLE 120
AP EAEAQCA + +AGKVYA A+EDMD L F S ILLRH+TFSE RK P+ E HL++VLE
Sbjct: 162 APTEAEAQCAVLARAGKVYAAASEDMDTLCFDSPILLRHLTFSEQRKEPILEIHLDRVLE 221
Query: 121 GMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDT---KKYTVP 177
G+++ ++F+DLCILLGCDY D I +GP A++LI++H S+EK++E I + KKYT+P
Sbjct: 222 GLDMDRKQFVDLCILLGCDYLDPIPKVGPNTALKLIRDHGSLEKVVEAIQSDPKKKYTIP 281
Query: 178 EGWLYKEARELFRHPEV 194
E W YK+ARELF P+V
Sbjct: 282 EDWPYKDARELFFDPDV 298
Score = 110 bits (274), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 48/72 (66%), Positives = 59/72 (81%)
Query: 322 IDASMSLYQFLIAVRSEGNQLMSVDGEPTSHLMGTFYRTIRLVEHGLKPIYVFDGKPPTL 381
+ SMS+Y FL+AVRS+G QLMS GE TSHLMG FYRT+R+VE+G+KP+YVFDG PP L
Sbjct: 40 VHGSMSIYSFLVAVRSDGQQLMSETGETTSHLMGMFYRTLRIVENGIKPVYVFDGAPPKL 99
Query: 382 KSGELNKRMEKR 393
KSGEL KR ++
Sbjct: 100 KSGELAKRFMRK 111
Score = 89.4 bits (220), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 39/69 (56%), Positives = 53/69 (76%), Gaps = 3/69 (4%)
Query: 232 FIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDT---KKYTVPEGWLYKEA 288
F+DLCILLGCDY D I +GP A++LI++H S+EK++E I + KKYT+PE W YK+A
Sbjct: 230 FVDLCILLGCDYLDPIPKVGPNTALKLIRDHGSLEKVVEAIQSDPKKKYTIPEDWPYKDA 289
Query: 289 RELFRHPEI 297
RELF P++
Sbjct: 290 RELFFDPDV 298
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 29/60 (48%), Positives = 39/60 (65%), Gaps = 1/60 (1%)
Query: 409 LKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSTTTQGRLDSFF-TIRREEKRKS 467
KW PD +GLVK+L +K F+EDR+RNGA +L K T Q RL+ FF I + E+ K+
Sbjct: 308 FKWEAPDVEGLVKFLVEEKAFSEDRVRNGAARLQKNLKTAQQSRLEGFFKPIAKTEQEKA 367
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 29/61 (47%), Positives = 39/61 (63%), Gaps = 1/61 (1%)
Query: 2 TLKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSSTTQGRLDSFF-TIRREEKRK 60
KW PD +GLVK+L +K F+EDR+RNGA +L K + Q RL+ FF I + E+ K
Sbjct: 307 NFKWEAPDVEGLVKFLVEEKAFSEDRVRNGAARLQKNLKTAQQSRLEGFFKPIAKTEQEK 366
Query: 61 A 61
A
Sbjct: 367 A 367
>gi|340966641|gb|EGS22148.1| hypothetical protein CTHT_0016650 [Chaetomium thermophilum var.
thermophilum DSM 1495]
Length = 395
Score = 178 bits (451), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 84/144 (58%), Positives = 109/144 (75%), Gaps = 6/144 (4%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVLE 120
AP EAEAQCA + +AGKVYA A+EDMD L F + ILLRH+TF+E RK P+QE H +KVLE
Sbjct: 155 APTEAEAQCAVLARAGKVYAAASEDMDTLCFNTPILLRHLTFAEQRKEPIQEIHTDKVLE 214
Query: 121 GMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILE---NIDTKKYTVP 177
G+ + ++F+DLCILLGCDY D I IGP A++LI+EH S+EK++E N K+YT+P
Sbjct: 215 GLNMDRKQFVDLCILLGCDYLDPIPKIGPSTALKLIREHGSLEKVVEFIQNDPKKRYTIP 274
Query: 178 EGWLYKEARELFRHPEVA---DPE 198
E W Y++ARELF +P+V DPE
Sbjct: 275 EDWPYQDARELFFNPDVRQADDPE 298
Score = 137 bits (344), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 66/112 (58%), Positives = 86/112 (76%), Gaps = 7/112 (6%)
Query: 303 IELVADVAPSSIRES-------RKICIDASMSLYQFLIAVRSEGNQLMSVDGEPTSHLMG 355
+L+ + AP SIRE RK+ IDASMS+Y FLIAVRS+G QLM+ GE TSHLMG
Sbjct: 7 FQLIKEEAPLSIREGEIKQHFGRKVAIDASMSIYSFLIAVRSDGQQLMNDAGETTSHLMG 66
Query: 356 TFYRTIRLVEHGLKPIYVFDGKPPTLKSGELNKRMEKREDAQKALAKAQEQG 407
FYRT+R+V+ G+KP+YVFDGKPP LKSGEL KR +++++AQ+ L +A+E G
Sbjct: 67 MFYRTLRMVDAGIKPLYVFDGKPPKLKSGELAKRFQRKQEAQEDLEEAKETG 118
Score = 89.4 bits (220), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 42/76 (55%), Positives = 56/76 (73%), Gaps = 6/76 (7%)
Query: 232 FIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILE---NIDTKKYTVPEGWLYKEA 288
F+DLCILLGCDY D I IGP A++LI+EH S+EK++E N K+YT+PE W Y++A
Sbjct: 223 FVDLCILLGCDYLDPIPKIGPSTALKLIREHGSLEKVVEFIQNDPKKRYTIPEDWPYQDA 282
Query: 289 RELFRHPEIA---DPE 301
RELF +P++ DPE
Sbjct: 283 RELFFNPDVRQADDPE 298
Score = 58.5 bits (140), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 23/51 (45%), Positives = 34/51 (66%)
Query: 3 LKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSSTTQGRLDSFFTI 53
KW PD +GLV++L +K F+EDR+RNGA++L K Q R++ FF +
Sbjct: 301 FKWEKPDVEGLVQFLVKEKGFSEDRVRNGAQRLEKNLKGAQQARIEGFFKV 351
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 23/51 (45%), Positives = 34/51 (66%)
Query: 409 LKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSTTTQGRLDSFFTI 459
KW PD +GLV++L +K F+EDR+RNGA++L K Q R++ FF +
Sbjct: 301 FKWEKPDVEGLVQFLVKEKGFSEDRVRNGAQRLEKNLKGAQQARIEGFFKV 351
>gi|225685184|gb|EEH23468.1| DNA-repair protein rad2 [Paracoccidioides brasiliensis Pb03]
Length = 359
Score = 178 bits (451), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 82/137 (59%), Positives = 107/137 (78%), Gaps = 3/137 (2%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVLE 120
AP EAEAQCA + +AGKVYA A+EDMD L F S ILLRH+TFSE RK P+ E HL++VLE
Sbjct: 119 APTEAEAQCAVLARAGKVYAAASEDMDTLCFDSPILLRHLTFSEQRKEPILEIHLDRVLE 178
Query: 121 GMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDT---KKYTVP 177
G+++ ++F+DLCILLGCDY D I IGP A++LI++H S+EK++E I++ KKY +P
Sbjct: 179 GLDMDRKQFVDLCILLGCDYLDPIPKIGPNTALKLIRDHGSLEKVVEAIESDPKKKYVIP 238
Query: 178 EGWLYKEARELFRHPEV 194
E W YK+ARELF P+V
Sbjct: 239 EDWPYKDARELFFDPDV 255
Score = 106 bits (265), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 46/68 (67%), Positives = 57/68 (83%)
Query: 326 MSLYQFLIAVRSEGNQLMSVDGEPTSHLMGTFYRTIRLVEHGLKPIYVFDGKPPTLKSGE 385
MS+Y FL+AVRS+G QLMS GE TSHLMG FYRT+R+V++G+KP+YVFDG PP LKSGE
Sbjct: 1 MSIYSFLVAVRSDGQQLMSETGETTSHLMGMFYRTLRIVDNGIKPVYVFDGAPPKLKSGE 60
Query: 386 LNKRMEKR 393
L KR ++
Sbjct: 61 LAKRFMRK 68
Score = 89.0 bits (219), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 39/69 (56%), Positives = 53/69 (76%), Gaps = 3/69 (4%)
Query: 232 FIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDT---KKYTVPEGWLYKEA 288
F+DLCILLGCDY D I IGP A++LI++H S+EK++E I++ KKY +PE W YK+A
Sbjct: 187 FVDLCILLGCDYLDPIPKIGPNTALKLIRDHGSLEKVVEAIESDPKKKYVIPEDWPYKDA 246
Query: 289 RELFRHPEI 297
RELF P++
Sbjct: 247 RELFFDPDV 255
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/73 (38%), Positives = 44/73 (60%), Gaps = 1/73 (1%)
Query: 409 LKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSTTTQGRLDSFF-TIRREEKRKS 467
KW PD +GLVK+L +K F+EDR+RN A +L K T Q RL+ FF I + ++ K+
Sbjct: 265 FKWEAPDVEGLVKFLVEEKAFSEDRVRNAAARLQKNLKTAQQSRLEGFFKPIAKTQEEKA 324
Query: 468 RCQYQCQYQCQYQ 480
+ + + + + Q
Sbjct: 325 TLKRKHEEKIELQ 337
Score = 55.8 bits (133), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 24/49 (48%), Positives = 32/49 (65%)
Query: 3 LKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSSTTQGRLDSFF 51
KW PD +GLVK+L +K F+EDR+RN A +L K + Q RL+ FF
Sbjct: 265 FKWEAPDVEGLVKFLVEEKAFSEDRVRNAAARLQKNLKTAQQSRLEGFF 313
>gi|119192254|ref|XP_001246733.1| conserved hypothetical protein [Coccidioides immitis RS]
Length = 368
Score = 178 bits (451), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 81/137 (59%), Positives = 106/137 (77%), Gaps = 3/137 (2%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVLE 120
AP EAEAQCA + +AGKVYA A+EDMD L F S ILLRH+TFSE RK P+QE HLE+VLE
Sbjct: 128 APTEAEAQCAVLARAGKVYAAASEDMDTLCFDSPILLRHLTFSEQRKEPIQEIHLERVLE 187
Query: 121 GMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKI---LENIDTKKYTVP 177
G+ + ++F+DLCILLGCDY D I +GP A+++I++H S+EK+ +EN KKYT+P
Sbjct: 188 GLGMDRKQFVDLCILLGCDYVDPIPKVGPNTALKMIRDHGSLEKVVEAMENDPKKKYTIP 247
Query: 178 EGWLYKEARELFRHPEV 194
E W Y++AR+LF P+V
Sbjct: 248 EDWPYEQARDLFFEPDV 264
Score = 115 bits (288), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 52/83 (62%), Positives = 68/83 (81%)
Query: 325 SMSLYQFLIAVRSEGNQLMSVDGEPTSHLMGTFYRTIRLVEHGLKPIYVFDGKPPTLKSG 384
SMS+Y FLIAVRS+G QLM+ GE TSHLMG FYRT+R+V++G+KP+YVFDG PP LKSG
Sbjct: 22 SMSIYSFLIAVRSDGQQLMNESGETTSHLMGFFYRTLRMVDNGIKPLYVFDGAPPKLKSG 81
Query: 385 ELNKRMEKREDAQKALAKAQEQG 407
EL KRM ++++A + +A+E G
Sbjct: 82 ELAKRMARKQEAAEQHEEAKETG 104
Score = 86.3 bits (212), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 36/69 (52%), Positives = 52/69 (75%), Gaps = 3/69 (4%)
Query: 232 FIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKI---LENIDTKKYTVPEGWLYKEA 288
F+DLCILLGCDY D I +GP A+++I++H S+EK+ +EN KKYT+PE W Y++A
Sbjct: 196 FVDLCILLGCDYVDPIPKVGPNTALKMIRDHGSLEKVVEAMENDPKKKYTIPEDWPYEQA 255
Query: 289 RELFRHPEI 297
R+LF P++
Sbjct: 256 RDLFFEPDV 264
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/49 (51%), Positives = 32/49 (65%)
Query: 409 LKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSTTTQGRLDSFF 457
KW PD +GLVK+L K F+EDR+R+GA +L K T Q RL+ FF
Sbjct: 274 FKWESPDVEGLVKFLVEGKGFSEDRVRSGAARLQKNLKTAQQSRLEGFF 322
Score = 57.0 bits (136), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 27/60 (45%), Positives = 38/60 (63%), Gaps = 1/60 (1%)
Query: 3 LKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSSTTQGRLDSFF-TIRREEKRKA 61
KW PD +GLVK+L K F+EDR+R+GA +L K + Q RL+ FF + + E+ KA
Sbjct: 274 FKWESPDVEGLVKFLVEGKGFSEDRVRSGAARLQKNLKTAQQSRLEGFFKPVAKTEEEKA 333
>gi|410074109|ref|XP_003954637.1| hypothetical protein KAFR_0A00640 [Kazachstania africana CBS 2517]
gi|372461219|emb|CCF55502.1| hypothetical protein KAFR_0A00640 [Kazachstania africana CBS 2517]
Length = 379
Score = 177 bits (450), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 85/146 (58%), Positives = 110/146 (75%), Gaps = 4/146 (2%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVLE 120
APCEAEAQCA + K GKVYA A+EDMD L + + L+RH+TFSEA+K P+QE + E VL+
Sbjct: 153 APCEAEAQCAELAKVGKVYAAASEDMDTLCYRTPYLVRHLTFSEAKKEPIQEINTEIVLQ 212
Query: 121 GMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDT----KKYTV 176
M+L+ E+FIDL I+LGCDYC+SIRG+GP A++LIKEH S+EKI+E ID+ K+ +
Sbjct: 213 SMDLTLEQFIDLGIMLGCDYCESIRGVGPVTALKLIKEHGSLEKIVEYIDSGDTKTKWKI 272
Query: 177 PEGWLYKEARELFRHPEVADPETIEF 202
PE W YKEARELF P+V + I
Sbjct: 273 PENWPYKEARELFLKPDVINGNDITL 298
Score = 120 bits (302), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 61/109 (55%), Positives = 79/109 (72%), Gaps = 8/109 (7%)
Query: 305 LVADVAPSSIRES-------RKICIDASMSLYQFLIAVRS-EGNQLMSVDGEPTSHLMGT 356
L+++ AP + R S RK+ IDASMSLYQFLIAVR +G QL + GE TSHLMG
Sbjct: 9 LISENAPLATRRSDIKAFFGRKVAIDASMSLYQFLIAVRQQDGGQLATDSGETTSHLMGM 68
Query: 357 FYRTIRLVEHGLKPIYVFDGKPPTLKSGELNKRMEKREDAQKALAKAQE 405
FYRT+R++++G+KP YVFDGKPP LKS EL+KR +RE+ K L +A +
Sbjct: 69 FYRTLRMIDNGIKPCYVFDGKPPVLKSHELSKRTARREETTKKLDEATD 117
Score = 97.1 bits (240), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 46/81 (56%), Positives = 59/81 (72%), Gaps = 4/81 (4%)
Query: 229 LYSFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDT----KKYTVPEGWL 284
L FIDL I+LGCDYC+SIRG+GP A++LIKEH S+EKI+E ID+ K+ +PE W
Sbjct: 218 LEQFIDLGIMLGCDYCESIRGVGPVTALKLIKEHGSLEKIVEYIDSGDTKTKWKIPENWP 277
Query: 285 YKEARELFRHPEIADPETIEL 305
YKEARELF P++ + I L
Sbjct: 278 YKEARELFLKPDVINGNDITL 298
Score = 63.2 bits (152), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 27/51 (52%), Positives = 36/51 (70%)
Query: 1 MTLKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSSTTQGRLDSFF 51
+TLKW+ P E L+ YLC DK F+E+R+++G K+L K S QGRLD FF
Sbjct: 296 ITLKWNPPKEQELIDYLCKDKGFSEERVKSGIKRLQKGLKSGVQGRLDGFF 346
Score = 59.7 bits (143), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 25/49 (51%), Positives = 34/49 (69%)
Query: 409 LKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSTTTQGRLDSFF 457
LKW+ P E L+ YLC DK F+E+R+++G K+L K + QGRLD FF
Sbjct: 298 LKWNPPKEQELIDYLCKDKGFSEERVKSGIKRLQKGLKSGVQGRLDGFF 346
>gi|398396234|ref|XP_003851575.1| hypothetical protein MYCGRDRAFT_100567 [Zymoseptoria tritici
IPO323]
gi|339471455|gb|EGP86551.1| hypothetical protein MYCGRDRAFT_100567 [Zymoseptoria tritici
IPO323]
Length = 393
Score = 177 bits (450), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 82/145 (56%), Positives = 110/145 (75%), Gaps = 3/145 (2%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVLE 120
AP EAEAQCA + + GKV+A A+EDMD LTF S +L+R +TF+E RK PVQE HL++VLE
Sbjct: 155 APTEAEAQCAVLARGGKVFAAASEDMDTLTFASPVLVRKLTFAEQRKEPVQEIHLDRVLE 214
Query: 121 GMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENID-TKKYTVPEG 179
G+E+ +FID CILLGCDY D ++GIGPK A+ LIKEH+++E ++ I+ + KYT+PE
Sbjct: 215 GLEMDQTQFIDFCILLGCDYLDPVKGIGPKSALALIKEHKTLENVVVYIEKSGKYTLPED 274
Query: 180 WLYKEARELFRHPEV--ADPETIEF 202
W Y++AR+LF P+V AD EF
Sbjct: 275 WPYQDARQLFLEPDVRQADEPECEF 299
Score = 129 bits (324), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 60/104 (57%), Positives = 79/104 (75%), Gaps = 7/104 (6%)
Query: 311 PSSIRES-------RKICIDASMSLYQFLIAVRSEGNQLMSVDGEPTSHLMGTFYRTIRL 363
P +++E RK+ IDASMSLY FL+AVRS G QLMS GE TSHLMG FYRT+R+
Sbjct: 15 PDAVKEGEIKTQFGRKVAIDASMSLYSFLVAVRSGGEQLMSDTGETTSHLMGMFYRTLRI 74
Query: 364 VEHGLKPIYVFDGKPPTLKSGELNKRMEKREDAQKALAKAQEQG 407
V++G+KP+YVFDG PP LKSGEL KR +++ +AQ++ +A+E G
Sbjct: 75 VDNGIKPVYVFDGAPPKLKSGELAKRFQRKSEAQESHEEAKETG 118
Score = 89.4 bits (220), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 37/67 (55%), Positives = 53/67 (79%), Gaps = 1/67 (1%)
Query: 232 FIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENID-TKKYTVPEGWLYKEARE 290
FID CILLGCDY D ++GIGPK A+ LIKEH+++E ++ I+ + KYT+PE W Y++AR+
Sbjct: 223 FIDFCILLGCDYLDPVKGIGPKSALALIKEHKTLENVVVYIEKSGKYTLPEDWPYQDARQ 282
Query: 291 LFRHPEI 297
LF P++
Sbjct: 283 LFLEPDV 289
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/52 (50%), Positives = 35/52 (67%)
Query: 3 LKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSSTTQGRLDSFFTIR 54
KW PD DGLVK+L +K F+EDR+R+GA +L K S Q RL+ FF ++
Sbjct: 299 FKWEAPDVDGLVKFLVEEKGFSEDRVRSGASRLQKNLKSGQQSRLEGFFKVQ 350
Score = 59.7 bits (143), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 25/53 (47%), Positives = 36/53 (67%)
Query: 408 KLKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSTTTQGRLDSFFTIR 460
+ KW PD DGLVK+L +K F+EDR+R+GA +L K + Q RL+ FF ++
Sbjct: 298 EFKWEAPDVDGLVKFLVEEKGFSEDRVRSGASRLQKNLKSGQQSRLEGFFKVQ 350
>gi|317376212|sp|B2VTT3.2|FEN1_PYRTR RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
Length = 395
Score = 177 bits (450), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 83/144 (57%), Positives = 109/144 (75%), Gaps = 6/144 (4%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVLE 120
AP EAEAQCAA+ + GKVYA A+EDMD LTF + ILLRH+TFSE RK P+ E HL+KVLE
Sbjct: 155 APTEAEAQCAALARGGKVYAAASEDMDTLTFDTPILLRHLTFSEQRKEPILEIHLDKVLE 214
Query: 121 GMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENI---DTKKYTVP 177
G+++ ++FIDLCILLGCDY D I+GIGP A++LI+EH +E ++E+I +KK T+P
Sbjct: 215 GLQMERKQFIDLCILLGCDYLDPIKGIGPSTALKLIREHNDLEGVVEHIKSQSSKKLTIP 274
Query: 178 EGWLYKEARELFRHPEVA---DPE 198
+ W + +AR LF P+V DPE
Sbjct: 275 DDWPFADARLLFLEPDVRPADDPE 298
Score = 120 bits (302), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 55/97 (56%), Positives = 74/97 (76%), Gaps = 7/97 (7%)
Query: 304 ELVADVAPSSIRES-------RKICIDASMSLYQFLIAVRSEGNQLMSVDGEPTSHLMGT 356
+L+ + P ++++ RK+ IDASMS+Y FLIAVRS+G QLMS GE TSHLMG
Sbjct: 8 QLIEEHTPEAVKKGEIKNQFGRKVAIDASMSIYSFLIAVRSDGQQLMSETGETTSHLMGL 67
Query: 357 FYRTIRLVEHGLKPIYVFDGKPPTLKSGELNKRMEKR 393
FYRT+R+V++G+KP+YVFDG PP LKSGEL KR +++
Sbjct: 68 FYRTMRMVDNGIKPLYVFDGAPPKLKSGELAKRFQRK 104
Score = 85.5 bits (210), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 39/76 (51%), Positives = 54/76 (71%), Gaps = 6/76 (7%)
Query: 232 FIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENI---DTKKYTVPEGWLYKEA 288
FIDLCILLGCDY D I+GIGP A++LI+EH +E ++E+I +KK T+P+ W + +A
Sbjct: 223 FIDLCILLGCDYLDPIKGIGPSTALKLIREHNDLEGVVEHIKSQSSKKLTIPDDWPFADA 282
Query: 289 RELFRHPEIA---DPE 301
R LF P++ DPE
Sbjct: 283 RLLFLEPDVRPADDPE 298
Score = 60.8 bits (146), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/49 (55%), Positives = 33/49 (67%)
Query: 409 LKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSTTTQGRLDSFF 457
KW PD +GLVK+L +K+F EDR+RNGA KL K T Q RL+ FF
Sbjct: 301 FKWEAPDVEGLVKFLVEEKHFNEDRVRNGAAKLQKNMKTAQQSRLEGFF 349
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 31/72 (43%), Positives = 40/72 (55%), Gaps = 9/72 (12%)
Query: 3 LKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSSTTQGRLDSFFTIRREEKRKAP 62
KW PD +GLVK+L +K+F EDR+RNGA KL K + Q RL+ FF P
Sbjct: 301 FKWEAPDVEGLVKFLVEEKHFNEDRVRNGAAKLQKNMKTAQQSRLEGFF---------KP 351
Query: 63 CEAEAQCAAMVK 74
E A+ A +K
Sbjct: 352 IEKTAEQKATLK 363
>gi|226294510|gb|EEH49930.1| DNA-repair protein rad2 [Paracoccidioides brasiliensis Pb18]
Length = 528
Score = 177 bits (450), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 82/137 (59%), Positives = 107/137 (78%), Gaps = 3/137 (2%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVLE 120
AP EAEAQCA + +AGKVYA A+EDMD L F S ILLRH+TFSE RK P+ E HL++VLE
Sbjct: 288 APTEAEAQCAVLARAGKVYAAASEDMDTLCFDSPILLRHLTFSEQRKEPILEIHLDRVLE 347
Query: 121 GMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDT---KKYTVP 177
G+++ ++F+DLCILLGCDY D I IGP A++LI++H S+EK++E I++ KKY +P
Sbjct: 348 GLDMDRKQFVDLCILLGCDYLDPIPKIGPNTALKLIRDHGSLEKVVEAIESDPKKKYVIP 407
Query: 178 EGWLYKEARELFRHPEV 194
E W YK+ARELF P+V
Sbjct: 408 EDWPYKDARELFFDPDV 424
Score = 108 bits (269), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 47/70 (67%), Positives = 59/70 (84%)
Query: 324 ASMSLYQFLIAVRSEGNQLMSVDGEPTSHLMGTFYRTIRLVEHGLKPIYVFDGKPPTLKS 383
+SMS+Y FL+AVRS+G QLMS GE TSHLMG FYRT+R+V++G+KP+YVFDG PP LKS
Sbjct: 168 SSMSIYSFLVAVRSDGQQLMSETGETTSHLMGMFYRTLRIVDNGIKPVYVFDGAPPKLKS 227
Query: 384 GELNKRMEKR 393
GEL KR ++
Sbjct: 228 GELAKRFMRK 237
Score = 89.0 bits (219), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 39/69 (56%), Positives = 53/69 (76%), Gaps = 3/69 (4%)
Query: 232 FIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDT---KKYTVPEGWLYKEA 288
F+DLCILLGCDY D I IGP A++LI++H S+EK++E I++ KKY +PE W YK+A
Sbjct: 356 FVDLCILLGCDYLDPIPKIGPNTALKLIRDHGSLEKVVEAIESDPKKKYVIPEDWPYKDA 415
Query: 289 RELFRHPEI 297
RELF P++
Sbjct: 416 RELFFDPDV 424
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/49 (51%), Positives = 32/49 (65%)
Query: 409 LKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSTTTQGRLDSFF 457
KW PD +GLVK+L +K F+EDR+RN A +L K T Q RL+ FF
Sbjct: 434 FKWEAPDVEGLVKFLVEEKAFSEDRVRNAAARLQKNLKTAQQSRLEGFF 482
Score = 56.2 bits (134), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 27/60 (45%), Positives = 38/60 (63%), Gaps = 1/60 (1%)
Query: 3 LKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSSTTQGRLDSFF-TIRREEKRKA 61
KW PD +GLVK+L +K F+EDR+RN A +L K + Q RL+ FF I + ++ KA
Sbjct: 434 FKWEAPDVEGLVKFLVEEKAFSEDRVRNAAARLQKNLKTAQQSRLEGFFKPIAKTQEEKA 493
>gi|254585117|ref|XP_002498126.1| ZYRO0G02860p [Zygosaccharomyces rouxii]
gi|317376173|sp|C5DZA9.1|FEN1_ZYGRC RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|238941020|emb|CAR29193.1| ZYRO0G02860p [Zygosaccharomyces rouxii]
Length = 379
Score = 177 bits (449), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 84/146 (57%), Positives = 110/146 (75%), Gaps = 4/146 (2%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVLE 120
APCEAEAQCA + K GKVYA A+EDMD L + + LLRH+TFSEA+K P+ E E VL+
Sbjct: 153 APCEAEAQCAQLAKDGKVYAAASEDMDTLCYKTPYLLRHLTFSEAKKEPIHEIDTELVLQ 212
Query: 121 GMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDT----KKYTV 176
G+EL+ E+F+DL I+LGCDYC+SIRGIGP A++LIKEH S+EKI+E I++ K+ V
Sbjct: 213 GLELTQEQFVDLGIMLGCDYCESIRGIGPVTALKLIKEHGSLEKIVEFIESGQANNKWKV 272
Query: 177 PEGWLYKEARELFRHPEVADPETIEF 202
PE W Y EAR+LF +P+V + + I
Sbjct: 273 PEDWPYNEARQLFLNPDVVNSQDINL 298
Score = 124 bits (312), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 67/134 (50%), Positives = 90/134 (67%), Gaps = 15/134 (11%)
Query: 305 LVADVAPSSIRES-------RKICIDASMSLYQFLIAVRS-EGNQLMSVDGEPTSHLMGT 356
++++ PS++R+S RK+ IDASMSLYQFLIAVR +G QL + GE TSHLMG
Sbjct: 9 IISEHVPSAVRKSDIKAFFGRKVAIDASMSLYQFLIAVRQQDGAQLSTESGETTSHLMGM 68
Query: 357 FYRTIRLVEHGLKPIYVFDGKPPTLKSGELNKRMEKREDAQKALAKAQEQG-------KL 409
FYRT+R++++G+KP YVFDGKPP LKS EL KR +KR D +K L +A +Q +L
Sbjct: 69 FYRTLRMIDNGIKPCYVFDGKPPILKSFELKKRSDKRVDTEKKLEEAVDQAEKLKQERRL 128
Query: 410 KWSDPDEDGLVKYL 423
P+ + KYL
Sbjct: 129 VKVSPEHNDEAKYL 142
Score = 94.7 bits (234), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 43/78 (55%), Positives = 59/78 (75%), Gaps = 4/78 (5%)
Query: 232 FIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDT----KKYTVPEGWLYKE 287
F+DL I+LGCDYC+SIRGIGP A++LIKEH S+EKI+E I++ K+ VPE W Y E
Sbjct: 221 FVDLGIMLGCDYCESIRGIGPVTALKLIKEHGSLEKIVEFIESGQANNKWKVPEDWPYNE 280
Query: 288 ARELFRHPEIADPETIEL 305
AR+LF +P++ + + I L
Sbjct: 281 ARQLFLNPDVVNSQDINL 298
Score = 58.5 bits (140), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 24/51 (47%), Positives = 36/51 (70%)
Query: 1 MTLKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSSTTQGRLDSFF 51
+ LKW+ PDE+ L+++LC +K F E+R+++G K+L K S Q RLD FF
Sbjct: 296 INLKWNPPDEEKLIEFLCHEKKFNEERVKSGIKRLQKGLKSGVQVRLDGFF 346
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 23/49 (46%), Positives = 35/49 (71%)
Query: 409 LKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSTTTQGRLDSFF 457
LKW+ PDE+ L+++LC +K F E+R+++G K+L K + Q RLD FF
Sbjct: 298 LKWNPPDEEKLIEFLCHEKKFNEERVKSGIKRLQKGLKSGVQVRLDGFF 346
>gi|449510827|ref|XP_004163772.1| PREDICTED: LOW QUALITY PROTEIN: flap endonuclease 1-like [Cucumis
sativus]
Length = 382
Score = 177 bits (449), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 81/134 (60%), Positives = 105/134 (78%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVLE 120
AP EAEAQCAA+ K GKVYA A+EDMD+LTFGS LRH+ +RK+PV EF + K+LE
Sbjct: 156 APSEAEAQCAALCKLGKVYAVASEDMDSLTFGSPRFLRHLMDPSSRKIPVMEFEVAKILE 215
Query: 121 GMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGW 180
+ L+ ++FIDLCIL GCDYCD+IRGIG A++LI++H SIE ILENI+ ++Y +P+ W
Sbjct: 216 ELNLTMDQFIDLCILSGCDYCDNIRGIGGLTALKLIRQHGSIESILENINKERYQIPDDW 275
Query: 181 LYKEARELFRHPEV 194
YKEAR+LF+ P V
Sbjct: 276 PYKEARQLFKEPLV 289
Score = 116 bits (290), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 62/112 (55%), Positives = 76/112 (67%), Gaps = 8/112 (7%)
Query: 304 ELVADVAPSSIRE-------SRKICIDASMSLYQFLIAVRSEGNQLMSVD-GEPTSHLMG 355
+L+AD AP ++E RKI IDASMS+YQFLI V G ++++ + GE TSHL G
Sbjct: 8 KLLADNAPKGMKEQKFEAYFGRKIAIDASMSIYQFLIVVGRSGTEMLTNEAGEVTSHLQG 67
Query: 356 TFYRTIRLVEHGLKPIYVFDGKPPTLKSGELNKRMEKREDAQKALAKAQEQG 407
F RTIRL+E G+KP+YVFDGKPP LK EL KR KR DA + LA A E G
Sbjct: 68 MFNRTIRLLEAGIKPVYVFDGKPPDLKXQELAKRYSKRADATEDLADAIEVG 119
Score = 96.7 bits (239), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 43/75 (57%), Positives = 59/75 (78%), Gaps = 1/75 (1%)
Query: 232 FIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGWLYKEAREL 291
FIDLCIL GCDYCD+IRGIG A++LI++H SIE ILENI+ ++Y +P+ W YKEAR+L
Sbjct: 224 FIDLCILSGCDYCDNIRGIGGLTALKLIRQHGSIESILENINKERYQIPDDWPYKEARQL 283
Query: 292 FRHPEI-ADPETIEL 305
F+ P + D E +++
Sbjct: 284 FKEPLVCTDEEQLDI 298
Score = 54.3 bits (129), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 44/72 (61%), Gaps = 8/72 (11%)
Query: 1 MTLKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSSTTQGRLDSFF--------T 52
+ +KW+ PDE+GL+ +L + F +R+ +K+ A++ ++QGR++SFF +
Sbjct: 296 LDIKWTTPDEEGLLTFLVNENGFNSERVTKAVEKIKAAKNKSSQGRMESFFKPVTNPSVS 355
Query: 53 IRREEKRKAPCE 64
I+R+E + P +
Sbjct: 356 IKRKETSEKPTK 367
Score = 54.3 bits (129), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 37/54 (68%)
Query: 404 QEQGKLKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSTTTQGRLDSFF 457
+EQ +KW+ PDE+GL+ +L + F +R+ +K+ A++ ++QGR++SFF
Sbjct: 293 EEQLDIKWTTPDEEGLLTFLVNENGFNSERVTKAVEKIKAAKNKSSQGRMESFF 346
>gi|330914981|ref|XP_003296859.1| hypothetical protein PTT_07066 [Pyrenophora teres f. teres 0-1]
gi|311330789|gb|EFQ95031.1| hypothetical protein PTT_07066 [Pyrenophora teres f. teres 0-1]
Length = 342
Score = 177 bits (449), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 84/144 (58%), Positives = 109/144 (75%), Gaps = 6/144 (4%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVLE 120
AP EAEAQCAA+ + GKVYA A+EDMD LTF + ILLRH+TFSE RK P+ E HL+KVLE
Sbjct: 102 APTEAEAQCAALARGGKVYAAASEDMDTLTFDTPILLRHLTFSEQRKEPILEIHLDKVLE 161
Query: 121 GMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENI---DTKKYTVP 177
G+++ ++FIDLCILLGCDY D I+GIGP A++LI+EH +E I+E+I +KK T+P
Sbjct: 162 GLQMERKQFIDLCILLGCDYLDPIKGIGPSTALKLIREHNDLEGIVEHIKSQTSKKLTIP 221
Query: 178 EGWLYKEARELFRHPEVA---DPE 198
+ W + +AR LF P+V DPE
Sbjct: 222 DDWPFADARLLFLEPDVRPADDPE 245
Score = 85.5 bits (210), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 40/76 (52%), Positives = 54/76 (71%), Gaps = 6/76 (7%)
Query: 232 FIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENI---DTKKYTVPEGWLYKEA 288
FIDLCILLGCDY D I+GIGP A++LI+EH +E I+E+I +KK T+P+ W + +A
Sbjct: 170 FIDLCILLGCDYLDPIKGIGPSTALKLIREHNDLEGIVEHIKSQTSKKLTIPDDWPFADA 229
Query: 289 RELFRHPEIA---DPE 301
R LF P++ DPE
Sbjct: 230 RLLFLEPDVRPADDPE 245
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 34/51 (66%), Positives = 43/51 (84%)
Query: 343 MSVDGEPTSHLMGTFYRTIRLVEHGLKPIYVFDGKPPTLKSGELNKRMEKR 393
MS GE TSHLMG FYRT+R+V++G+KP+YVFDG PP LKSGEL KR +++
Sbjct: 1 MSETGETTSHLMGLFYRTMRMVDNGIKPLYVFDGAPPKLKSGELAKRFQRK 51
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/49 (55%), Positives = 33/49 (67%)
Query: 409 LKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSTTTQGRLDSFF 457
KW PD +GLVK+L +K+F EDR+RNGA KL K T Q RL+ FF
Sbjct: 248 FKWEAPDVEGLVKFLVEEKHFNEDRVRNGAAKLQKNMKTAQQSRLEGFF 296
Score = 59.3 bits (142), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 26/49 (53%), Positives = 33/49 (67%)
Query: 3 LKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSSTTQGRLDSFF 51
KW PD +GLVK+L +K+F EDR+RNGA KL K + Q RL+ FF
Sbjct: 248 FKWEAPDVEGLVKFLVEEKHFNEDRVRNGAAKLQKNMKTAQQSRLEGFF 296
>gi|303312977|ref|XP_003066500.1| DNA-repair protein Rad2, putative [Coccidioides posadasii C735
delta SOWgp]
gi|240106162|gb|EER24355.1| DNA-repair protein Rad2, putative [Coccidioides posadasii C735
delta SOWgp]
Length = 359
Score = 177 bits (449), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 81/137 (59%), Positives = 106/137 (77%), Gaps = 3/137 (2%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVLE 120
AP EAEAQCA + +AGKVYA A+EDMD L F S ILLRH+TFSE RK P+QE HLE+VLE
Sbjct: 119 APTEAEAQCAVLARAGKVYAAASEDMDTLCFDSPILLRHLTFSEQRKEPIQEIHLERVLE 178
Query: 121 GMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKI---LENIDTKKYTVP 177
G+ + ++F+DLCILLGCDY D I +GP A+++I++H S+EK+ +EN KKYT+P
Sbjct: 179 GLGMDRKQFVDLCILLGCDYVDPIPKVGPNTALKMIRDHGSLEKVVEAMENDPKKKYTIP 238
Query: 178 EGWLYKEARELFRHPEV 194
E W Y++AR+LF P+V
Sbjct: 239 EDWPYEQARDLFFEPDV 255
Score = 113 bits (283), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 51/82 (62%), Positives = 67/82 (81%)
Query: 326 MSLYQFLIAVRSEGNQLMSVDGEPTSHLMGTFYRTIRLVEHGLKPIYVFDGKPPTLKSGE 385
MS+Y FLIAVRS+G QLM+ GE TSHLMG FYRT+R+V++G+KP+YVFDG PP LKSGE
Sbjct: 1 MSIYSFLIAVRSDGQQLMNESGETTSHLMGFFYRTLRMVDNGIKPLYVFDGAPPKLKSGE 60
Query: 386 LNKRMEKREDAQKALAKAQEQG 407
L KRM ++++A + +A+E G
Sbjct: 61 LAKRMARKQEAAEQHEEAKETG 82
Score = 86.3 bits (212), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 36/69 (52%), Positives = 52/69 (75%), Gaps = 3/69 (4%)
Query: 232 FIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKI---LENIDTKKYTVPEGWLYKEA 288
F+DLCILLGCDY D I +GP A+++I++H S+EK+ +EN KKYT+PE W Y++A
Sbjct: 187 FVDLCILLGCDYVDPIPKVGPNTALKMIRDHGSLEKVVEAMENDPKKKYTIPEDWPYEQA 246
Query: 289 RELFRHPEI 297
R+LF P++
Sbjct: 247 RDLFFEPDV 255
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/61 (45%), Positives = 38/61 (62%), Gaps = 2/61 (3%)
Query: 409 LKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSTTTQGRLDSFF--TIRREEKRK 466
KW PD +GLVK+L K F+EDR+R+GA +L K T Q RL+ FF + EE++
Sbjct: 265 FKWESPDVEGLVKFLVEGKGFSEDRVRSGAARLQKNLKTAQQSRLEGFFKPVAKTEEEKA 324
Query: 467 S 467
S
Sbjct: 325 S 325
Score = 57.0 bits (136), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 27/60 (45%), Positives = 38/60 (63%), Gaps = 1/60 (1%)
Query: 3 LKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSSTTQGRLDSFF-TIRREEKRKA 61
KW PD +GLVK+L K F+EDR+R+GA +L K + Q RL+ FF + + E+ KA
Sbjct: 265 FKWESPDVEGLVKFLVEGKGFSEDRVRSGAARLQKNLKTAQQSRLEGFFKPVAKTEEEKA 324
>gi|320036635|gb|EFW18574.1| flap endonuclease [Coccidioides posadasii str. Silveira]
gi|392864029|gb|EAS35174.2| flap endonuclease 1 [Coccidioides immitis RS]
Length = 395
Score = 177 bits (449), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 81/137 (59%), Positives = 106/137 (77%), Gaps = 3/137 (2%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVLE 120
AP EAEAQCA + +AGKVYA A+EDMD L F S ILLRH+TFSE RK P+QE HLE+VLE
Sbjct: 155 APTEAEAQCAVLARAGKVYAAASEDMDTLCFDSPILLRHLTFSEQRKEPIQEIHLERVLE 214
Query: 121 GMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKI---LENIDTKKYTVP 177
G+ + ++F+DLCILLGCDY D I +GP A+++I++H S+EK+ +EN KKYT+P
Sbjct: 215 GLGMDRKQFVDLCILLGCDYVDPIPKVGPNTALKMIRDHGSLEKVVEAMENDPKKKYTIP 274
Query: 178 EGWLYKEARELFRHPEV 194
E W Y++AR+LF P+V
Sbjct: 275 EDWPYEQARDLFFEPDV 291
Score = 128 bits (321), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 60/111 (54%), Positives = 84/111 (75%), Gaps = 7/111 (6%)
Query: 304 ELVADVAPSSIRES-------RKICIDASMSLYQFLIAVRSEGNQLMSVDGEPTSHLMGT 356
+++++ AP +I+ RK+ IDASMS+Y FLIAVRS+G QLM+ GE TSHLMG
Sbjct: 8 QIISENAPDAIKVGEIKNHFGRKVAIDASMSIYSFLIAVRSDGQQLMNESGETTSHLMGF 67
Query: 357 FYRTIRLVEHGLKPIYVFDGKPPTLKSGELNKRMEKREDAQKALAKAQEQG 407
FYRT+R+V++G+KP+YVFDG PP LKSGEL KRM ++++A + +A+E G
Sbjct: 68 FYRTLRMVDNGIKPLYVFDGAPPKLKSGELAKRMARKQEAAEQHEEAKETG 118
Score = 85.9 bits (211), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 36/69 (52%), Positives = 52/69 (75%), Gaps = 3/69 (4%)
Query: 232 FIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKI---LENIDTKKYTVPEGWLYKEA 288
F+DLCILLGCDY D I +GP A+++I++H S+EK+ +EN KKYT+PE W Y++A
Sbjct: 223 FVDLCILLGCDYVDPIPKVGPNTALKMIRDHGSLEKVVEAMENDPKKKYTIPEDWPYEQA 282
Query: 289 RELFRHPEI 297
R+LF P++
Sbjct: 283 RDLFFEPDV 291
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/61 (45%), Positives = 38/61 (62%), Gaps = 2/61 (3%)
Query: 409 LKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSTTTQGRLDSFF--TIRREEKRK 466
KW PD +GLVK+L K F+EDR+R+GA +L K T Q RL+ FF + EE++
Sbjct: 301 FKWESPDVEGLVKFLVEGKGFSEDRVRSGAARLQKNLKTAQQSRLEGFFKPVAKTEEEKA 360
Query: 467 S 467
S
Sbjct: 361 S 361
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/60 (45%), Positives = 38/60 (63%), Gaps = 1/60 (1%)
Query: 3 LKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSSTTQGRLDSFF-TIRREEKRKA 61
KW PD +GLVK+L K F+EDR+R+GA +L K + Q RL+ FF + + E+ KA
Sbjct: 301 FKWESPDVEGLVKFLVEGKGFSEDRVRSGAARLQKNLKTAQQSRLEGFFKPVAKTEEEKA 360
>gi|189191944|ref|XP_001932311.1| DNA-repair protein rad2 [Pyrenophora tritici-repentis Pt-1C-BFP]
gi|187973917|gb|EDU41416.1| DNA-repair protein rad2 [Pyrenophora tritici-repentis Pt-1C-BFP]
Length = 395
Score = 177 bits (449), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 83/144 (57%), Positives = 109/144 (75%), Gaps = 6/144 (4%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVLE 120
AP EAEAQCAA+ + GKVYA A+EDMD LTF + ILLRH+TFSE RK P+ E HL+KVLE
Sbjct: 155 APTEAEAQCAALARGGKVYAAASEDMDTLTFDTPILLRHLTFSEQRKEPILEIHLDKVLE 214
Query: 121 GMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENI---DTKKYTVP 177
G+++ ++FIDLCILLGCDY D I+GIGP A++LI+EH +E ++E+I +KK T+P
Sbjct: 215 GLQMERKQFIDLCILLGCDYLDPIKGIGPSTALKLIREHNDLEGVVEHIKSQSSKKLTIP 274
Query: 178 EGWLYKEARELFRHPEVA---DPE 198
+ W + +AR LF P+V DPE
Sbjct: 275 DDWPFADARLLFLEPDVRPADDPE 298
Score = 113 bits (283), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 53/97 (54%), Positives = 72/97 (74%), Gaps = 7/97 (7%)
Query: 304 ELVADVAPSSIRES-------RKICIDASMSLYQFLIAVRSEGNQLMSVDGEPTSHLMGT 356
+L+ + P ++++ RK+ I SMS+Y FLIAVRS+G QLMS GE TSHLMG
Sbjct: 8 QLIEEHTPEAVKKGEIKNQFGRKVAICRSMSIYSFLIAVRSDGQQLMSETGETTSHLMGL 67
Query: 357 FYRTIRLVEHGLKPIYVFDGKPPTLKSGELNKRMEKR 393
FYRT+R+V++G+KP+YVFDG PP LKSGEL KR +++
Sbjct: 68 FYRTMRMVDNGIKPLYVFDGAPPKLKSGELAKRFQRK 104
Score = 85.5 bits (210), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 39/76 (51%), Positives = 54/76 (71%), Gaps = 6/76 (7%)
Query: 232 FIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENI---DTKKYTVPEGWLYKEA 288
FIDLCILLGCDY D I+GIGP A++LI+EH +E ++E+I +KK T+P+ W + +A
Sbjct: 223 FIDLCILLGCDYLDPIKGIGPSTALKLIREHNDLEGVVEHIKSQSSKKLTIPDDWPFADA 282
Query: 289 RELFRHPEIA---DPE 301
R LF P++ DPE
Sbjct: 283 RLLFLEPDVRPADDPE 298
Score = 60.8 bits (146), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/49 (55%), Positives = 33/49 (67%)
Query: 409 LKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSTTTQGRLDSFF 457
KW PD +GLVK+L +K+F EDR+RNGA KL K T Q RL+ FF
Sbjct: 301 FKWEAPDVEGLVKFLVEEKHFNEDRVRNGAAKLQKNMKTAQQSRLEGFF 349
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 31/72 (43%), Positives = 40/72 (55%), Gaps = 9/72 (12%)
Query: 3 LKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSSTTQGRLDSFFTIRREEKRKAP 62
KW PD +GLVK+L +K+F EDR+RNGA KL K + Q RL+ FF P
Sbjct: 301 FKWEAPDVEGLVKFLVEEKHFNEDRVRNGAAKLQKNMKTAQQSRLEGFF---------KP 351
Query: 63 CEAEAQCAAMVK 74
E A+ A +K
Sbjct: 352 IEKTAEQKATLK 363
>gi|317376211|sp|B8MNF2.2|FEN1_TALSN RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
Length = 395
Score = 177 bits (449), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 82/137 (59%), Positives = 107/137 (78%), Gaps = 3/137 (2%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVLE 120
AP EAEAQCA + +AGKVYA A+EDMD L F + ILLRH+TFSE RK P+QE HL+K LE
Sbjct: 155 APTEAEAQCAVLARAGKVYAAASEDMDTLCFEAPILLRHLTFSEQRKEPIQEIHLDKALE 214
Query: 121 GMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDT---KKYTVP 177
G+ + ++FIDLCILLGCDY + I +GP A++LI+EH S+EK++E I++ KKY +P
Sbjct: 215 GLGMDRKQFIDLCILLGCDYLEPIPKVGPNTALKLIREHGSLEKVVEAIESDPKKKYVIP 274
Query: 178 EGWLYKEARELFRHPEV 194
+ W YKEARELF +P+V
Sbjct: 275 DDWPYKEARELFFNPDV 291
Score = 126 bits (317), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 59/111 (53%), Positives = 82/111 (73%), Gaps = 7/111 (6%)
Query: 304 ELVADVAPSSIRES-------RKICIDASMSLYQFLIAVRSEGNQLMSVDGEPTSHLMGT 356
+++++ AP +++ RK+ IDASMS+Y FLIAVRS+G QLMS GE TSHLMG
Sbjct: 8 QVISENAPDAVKTGEIKNHFGRKVAIDASMSIYSFLIAVRSDGQQLMSDAGETTSHLMGM 67
Query: 357 FYRTIRLVEHGLKPIYVFDGKPPTLKSGELNKRMEKREDAQKALAKAQEQG 407
FYRT+R+V++G+KP+YVFDG PP LK GEL KR ++ +A +A +A+E G
Sbjct: 68 FYRTLRIVDNGIKPLYVFDGAPPKLKGGELAKRSARKREAHEAHEEAKETG 118
Score = 89.4 bits (220), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 42/85 (49%), Positives = 60/85 (70%), Gaps = 8/85 (9%)
Query: 216 SIRGIGPKRAIELLYSFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDT- 274
++ G+G R FIDLCILLGCDY + I +GP A++LI+EH S+EK++E I++
Sbjct: 212 ALEGLGMDRK-----QFIDLCILLGCDYLEPIPKVGPNTALKLIREHGSLEKVVEAIESD 266
Query: 275 --KKYTVPEGWLYKEARELFRHPEI 297
KKY +P+ W YKEARELF +P++
Sbjct: 267 PKKKYVIPDDWPYKEARELFFNPDV 291
Score = 60.1 bits (144), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 35/105 (33%), Positives = 53/105 (50%), Gaps = 11/105 (10%)
Query: 355 GTFYRTIRLVEHGLKPIYVFDGKPPTLKSGEL--NKRMEKREDAQKALAKAQEQGKLKWS 412
G+ + + +E K YV P ++ EL N + K +D Q KW
Sbjct: 254 GSLEKVVEAIESDPKKKYVIPDDWPYKEARELFFNPDVRKADDPQ---------CDFKWE 304
Query: 413 DPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSTTTQGRLDSFF 457
PD +GL+++L +K F+EDR+RNGA +L K + Q RL+ FF
Sbjct: 305 SPDVEGLIQFLVTEKGFSEDRVRNGAARLAKNLKSAQQSRLEGFF 349
Score = 59.7 bits (143), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 27/60 (45%), Positives = 38/60 (63%), Gaps = 1/60 (1%)
Query: 3 LKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSSTTQGRLDSFF-TIRREEKRKA 61
KW PD +GL+++L +K F+EDR+RNGA +L K S Q RL+ FF + + E KA
Sbjct: 301 FKWESPDVEGLIQFLVTEKGFSEDRVRNGAARLAKNLKSAQQSRLEGFFKPVTKTEAEKA 360
>gi|242813984|ref|XP_002486279.1| Flap endonuclease Rad27, putative [Talaromyces stipitatus ATCC
10500]
gi|218714618|gb|EED14041.1| Flap endonuclease Rad27, putative [Talaromyces stipitatus ATCC
10500]
Length = 399
Score = 177 bits (448), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 82/137 (59%), Positives = 107/137 (78%), Gaps = 3/137 (2%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVLE 120
AP EAEAQCA + +AGKVYA A+EDMD L F + ILLRH+TFSE RK P+QE HL+K LE
Sbjct: 159 APTEAEAQCAVLARAGKVYAAASEDMDTLCFEAPILLRHLTFSEQRKEPIQEIHLDKALE 218
Query: 121 GMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDT---KKYTVP 177
G+ + ++FIDLCILLGCDY + I +GP A++LI+EH S+EK++E I++ KKY +P
Sbjct: 219 GLGMDRKQFIDLCILLGCDYLEPIPKVGPNTALKLIREHGSLEKVVEAIESDPKKKYVIP 278
Query: 178 EGWLYKEARELFRHPEV 194
+ W YKEARELF +P+V
Sbjct: 279 DDWPYKEARELFFNPDV 295
Score = 115 bits (288), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 57/115 (49%), Positives = 80/115 (69%), Gaps = 11/115 (9%)
Query: 304 ELVADVAPSSIRES-------RKICI----DASMSLYQFLIAVRSEGNQLMSVDGEPTSH 352
+++++ AP +++ RK+ I SMS+Y FLIAVRS+G QLMS GE TSH
Sbjct: 8 QVISENAPDAVKTGEIKNHFGRKVAIVRINRISMSIYSFLIAVRSDGQQLMSDAGETTSH 67
Query: 353 LMGTFYRTIRLVEHGLKPIYVFDGKPPTLKSGELNKRMEKREDAQKALAKAQEQG 407
LMG FYRT+R+V++G+KP+YVFDG PP LK GEL KR ++ +A +A +A+E G
Sbjct: 68 LMGMFYRTLRIVDNGIKPLYVFDGAPPKLKGGELAKRSARKREAHEAHEEAKETG 122
Score = 89.4 bits (220), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 42/85 (49%), Positives = 60/85 (70%), Gaps = 8/85 (9%)
Query: 216 SIRGIGPKRAIELLYSFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDT- 274
++ G+G R FIDLCILLGCDY + I +GP A++LI+EH S+EK++E I++
Sbjct: 216 ALEGLGMDRK-----QFIDLCILLGCDYLEPIPKVGPNTALKLIREHGSLEKVVEAIESD 270
Query: 275 --KKYTVPEGWLYKEARELFRHPEI 297
KKY +P+ W YKEARELF +P++
Sbjct: 271 PKKKYVIPDDWPYKEARELFFNPDV 295
Score = 60.1 bits (144), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 35/105 (33%), Positives = 53/105 (50%), Gaps = 11/105 (10%)
Query: 355 GTFYRTIRLVEHGLKPIYVFDGKPPTLKSGEL--NKRMEKREDAQKALAKAQEQGKLKWS 412
G+ + + +E K YV P ++ EL N + K +D Q KW
Sbjct: 258 GSLEKVVEAIESDPKKKYVIPDDWPYKEARELFFNPDVRKADDPQ---------CDFKWE 308
Query: 413 DPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSTTTQGRLDSFF 457
PD +GL+++L +K F+EDR+RNGA +L K + Q RL+ FF
Sbjct: 309 SPDVEGLIQFLVTEKGFSEDRVRNGAARLAKNLKSAQQSRLEGFF 353
Score = 59.7 bits (143), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 27/60 (45%), Positives = 38/60 (63%), Gaps = 1/60 (1%)
Query: 3 LKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSSTTQGRLDSFF-TIRREEKRKA 61
KW PD +GL+++L +K F+EDR+RNGA +L K S Q RL+ FF + + E KA
Sbjct: 305 FKWESPDVEGLIQFLVTEKGFSEDRVRNGAARLAKNLKSAQQSRLEGFFKPVTKTEAEKA 364
>gi|356575281|ref|XP_003555770.1| PREDICTED: flap endonuclease 1-like [Glycine max]
Length = 382
Score = 177 bits (448), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 79/134 (58%), Positives = 105/134 (78%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVLE 120
AP EAEAQCAA+ KAGKVYA A+EDMD+LTFGS LRH+ ++K+PV EF + K+LE
Sbjct: 156 APSEAEAQCAALCKAGKVYAVASEDMDSLTFGSPKFLRHLMDPSSKKIPVMEFEVAKILE 215
Query: 121 GMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGW 180
+ ++ ++FIDLCIL GCDYCDSIRGIG A++LI++H SIE ILEN++ ++Y +P+ W
Sbjct: 216 ELNMTMDQFIDLCILSGCDYCDSIRGIGGLTALKLIRQHGSIENILENLNKERYQIPDNW 275
Query: 181 LYKEARELFRHPEV 194
Y+EAR LF+ P V
Sbjct: 276 PYQEARRLFKEPMV 289
Score = 114 bits (285), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 60/110 (54%), Positives = 78/110 (70%), Gaps = 8/110 (7%)
Query: 304 ELVADVAPSSIRES-------RKICIDASMSLYQFLIAVRSEGNQLMSVD-GEPTSHLMG 355
+L+AD AP S++E+ RKI IDASMS+YQFLI V G ++++ + GE TSHL G
Sbjct: 8 KLLADNAPKSMKENKFESYFGRKIAIDASMSIYQFLIVVGRSGTEMLTNEAGEVTSHLQG 67
Query: 356 TFYRTIRLVEHGLKPIYVFDGKPPTLKSGELNKRMEKREDAQKALAKAQE 405
F RTIRL+E G+KP+YVFDGKPP LK EL KR KR +A + L++A E
Sbjct: 68 MFSRTIRLLEAGIKPVYVFDGKPPDLKKQELAKRYSKRAEATEDLSEALE 117
Score = 95.9 bits (237), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 40/66 (60%), Positives = 53/66 (80%)
Query: 232 FIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGWLYKEAREL 291
FIDLCIL GCDYCDSIRGIG A++LI++H SIE ILEN++ ++Y +P+ W Y+EAR L
Sbjct: 224 FIDLCILSGCDYCDSIRGIGGLTALKLIRQHGSIENILENLNKERYQIPDNWPYQEARRL 283
Query: 292 FRHPEI 297
F+ P +
Sbjct: 284 FKEPMV 289
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 35/51 (68%)
Query: 1 MTLKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSSTTQGRLDSFF 51
+ +KWS PDE+GL+ +L + F DR+ +K+ A++ ++QGRL+SFF
Sbjct: 296 LDIKWSSPDEEGLITFLVNENGFNSDRVTKAIEKIKVAKNKSSQGRLESFF 346
Score = 56.2 bits (134), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 21/49 (42%), Positives = 34/49 (69%)
Query: 409 LKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSTTTQGRLDSFF 457
+KWS PDE+GL+ +L + F DR+ +K+ A++ ++QGRL+SFF
Sbjct: 298 IKWSSPDEEGLITFLVNENGFNSDRVTKAIEKIKVAKNKSSQGRLESFF 346
>gi|168014475|ref|XP_001759777.1| predicted protein [Physcomitrella patens subsp. patens]
gi|317374864|sp|A9S0B8.1|FEN11_PHYPA RecName: Full=Flap endonuclease 1-A; Short=FEN-1-A; AltName:
Full=Flap structure-specific endonuclease 1-A
gi|162688907|gb|EDQ75281.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 394
Score = 177 bits (448), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 78/141 (55%), Positives = 110/141 (78%)
Query: 60 KAPCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVL 119
+AP EAEA+CA++ KA KV+A A+EDMD+LT+GS LRH+ +RKLPV EF + KVL
Sbjct: 155 EAPSEAEAECASLCKAEKVFAVASEDMDSLTYGSTRFLRHLMEPTSRKLPVLEFDIAKVL 214
Query: 120 EGMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEG 179
EG+ L+ ++F+DLCIL GCDYCD+IRGIGP+ A+++I++H S+E +LEN++ +Y VP+
Sbjct: 215 EGLGLNMDQFVDLCILCGCDYCDTIRGIGPQTALKMIRQHGSLEIVLENLNKDRYQVPDP 274
Query: 180 WLYKEARELFRHPEVADPETI 200
W Y+EAR LF+ P V PE +
Sbjct: 275 WPYQEARRLFKEPLVTPPEKV 295
Score = 117 bits (293), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 61/112 (54%), Positives = 78/112 (69%), Gaps = 8/112 (7%)
Query: 304 ELVADVAPSSIRE-------SRKICIDASMSLYQFLIAVRSEGNQLMSVD-GEPTSHLMG 355
+L+AD A +++E RKI IDASMS+YQFLI V G++L++ D GE TSHL G
Sbjct: 8 KLIADNAHGAVKEQKFENYFGRKIAIDASMSIYQFLIVVGRSGSELLTNDAGEVTSHLQG 67
Query: 356 TFYRTIRLVEHGLKPIYVFDGKPPTLKSGELNKRMEKREDAQKALAKAQEQG 407
F RTIR++E GLKP+YVFDG+PP LK EL KR +REDA + L A+E G
Sbjct: 68 MFNRTIRVLEAGLKPVYVFDGQPPDLKKRELAKRFARREDAAEDLVTAKETG 119
Score = 100 bits (250), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 45/106 (42%), Positives = 68/106 (64%), Gaps = 5/106 (4%)
Query: 208 LLGCDYCDSIRGIGPKRAIELLYSFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEK 267
+L D + G+G + F+DLCIL GCDYCD+IRGIGP+ A+++I++H S+E
Sbjct: 205 VLEFDIAKVLEGLGLN-----MDQFVDLCILCGCDYCDTIRGIGPQTALKMIRQHGSLEI 259
Query: 268 ILENIDTKKYTVPEGWLYKEARELFRHPEIADPETIELVADVAPSS 313
+LEN++ +Y VP+ W Y+EAR LF+ P + PE + AP +
Sbjct: 260 VLENLNKDRYQVPDPWPYQEARRLFKEPLVTPPEKVPEFKWTAPDT 305
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 39/73 (53%), Gaps = 2/73 (2%)
Query: 3 LKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSSTTQGRLDSFFTI--RREEKRK 60
KW+ PD +GL + L + F DR+ +KL A++ +QGRL+SFF + KRK
Sbjct: 298 FKWTAPDTEGLRQLLVEENGFNNDRVMKAIEKLKVAKNKASQGRLESFFGVSSSSSNKRK 357
Query: 61 APCEAEAQCAAMV 73
++EA V
Sbjct: 358 EAPDSEASAGKQV 370
Score = 48.1 bits (113), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 32/52 (61%)
Query: 408 KLKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSTTTQGRLDSFFTI 459
+ KW+ PD +GL + L + F DR+ +KL A++ +QGRL+SFF +
Sbjct: 297 EFKWTAPDTEGLRQLLVEENGFNNDRVMKAIEKLKVAKNKASQGRLESFFGV 348
>gi|119493310|ref|XP_001263845.1| Flap endonuclease, putative [Neosartorya fischeri NRRL 181]
gi|317374917|sp|A1D8A4.1|FEN1_NEOFI RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|119412005|gb|EAW21948.1| Flap endonuclease, putative [Neosartorya fischeri NRRL 181]
Length = 395
Score = 177 bits (448), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 81/137 (59%), Positives = 105/137 (76%), Gaps = 3/137 (2%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVLE 120
AP EAEAQCA + +AGKVYA A+EDMD L F + ILLRH+TFSE RK P+QE HL + LE
Sbjct: 155 APTEAEAQCAVLARAGKVYAAASEDMDTLCFEAPILLRHLTFSEQRKEPIQEIHLNRTLE 214
Query: 121 GMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDT---KKYTVP 177
G+ + ++FIDLCILLGCDY + I +GP A++LI+EH S+EK++E I+ KKY +P
Sbjct: 215 GLGMDRKQFIDLCILLGCDYLEPIPKVGPNTALKLIREHGSLEKVVEAIENDPKKKYVIP 274
Query: 178 EGWLYKEARELFRHPEV 194
E W Y++ARELF HP+V
Sbjct: 275 EDWPYQDARELFLHPDV 291
Score = 122 bits (305), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 57/94 (60%), Positives = 71/94 (75%), Gaps = 7/94 (7%)
Query: 303 IELVADVAPSSIRES-------RKICIDASMSLYQFLIAVRSEGNQLMSVDGEPTSHLMG 355
+++ + AP +I+ RK+ IDASMS+Y FLIAVRSEG QLMS GE TSHLMG
Sbjct: 7 FQVIQENAPDAIKAGDIKNHFGRKVAIDASMSIYSFLIAVRSEGQQLMSESGETTSHLMG 66
Query: 356 TFYRTIRLVEHGLKPIYVFDGKPPTLKSGELNKR 389
FYRT+R+V++G+KP+YVFDG PP LKSGEL KR
Sbjct: 67 MFYRTLRMVDNGIKPLYVFDGAPPKLKSGELAKR 100
Score = 90.9 bits (224), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 42/85 (49%), Positives = 59/85 (69%), Gaps = 8/85 (9%)
Query: 216 SIRGIGPKRAIELLYSFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDT- 274
++ G+G R FIDLCILLGCDY + I +GP A++LI+EH S+EK++E I+
Sbjct: 212 TLEGLGMDRK-----QFIDLCILLGCDYLEPIPKVGPNTALKLIREHGSLEKVVEAIEND 266
Query: 275 --KKYTVPEGWLYKEARELFRHPEI 297
KKY +PE W Y++ARELF HP++
Sbjct: 267 PKKKYVIPEDWPYQDARELFLHPDV 291
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/61 (45%), Positives = 37/61 (60%), Gaps = 2/61 (3%)
Query: 409 LKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSTTTQGRLDSFF--TIRREEKRK 466
KW PD + LV++L DK F EDR+RNGA +L K T Q RL+ FF R +E++
Sbjct: 301 FKWEAPDVEALVEFLVKDKGFNEDRVRNGAARLQKNLKTAQQSRLEGFFKPVARTDEEKA 360
Query: 467 S 467
S
Sbjct: 361 S 361
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/60 (45%), Positives = 37/60 (61%), Gaps = 1/60 (1%)
Query: 3 LKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSSTTQGRLDSFF-TIRREEKRKA 61
KW PD + LV++L DK F EDR+RNGA +L K + Q RL+ FF + R ++ KA
Sbjct: 301 FKWEAPDVEALVEFLVKDKGFNEDRVRNGAARLQKNLKTAQQSRLEGFFKPVARTDEEKA 360
>gi|167391034|ref|XP_001739610.1| Flap endonuclease 1-A [Entamoeba dispar SAW760]
gi|317374900|sp|B0EN90.1|FEN1_ENTDS RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|165896655|gb|EDR24004.1| Flap endonuclease 1-A, putative [Entamoeba dispar SAW760]
Length = 376
Score = 176 bits (447), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 82/136 (60%), Positives = 106/136 (77%), Gaps = 1/136 (0%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVLE 120
A CEAE CAA+VKAGK YATATEDMDALT GS ++R + S+ +K P++E+ L +LE
Sbjct: 156 ANCEAEGTCAALVKAGKCYATATEDMDALTLGSEYVVRKFSASDNKKEPIREYSLSSILE 215
Query: 121 GMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGW 180
S E+FIDLCILLGCDYCD+I+G+GP A ELI++++SIE +L+++ + KY VPE W
Sbjct: 216 ETGFSMEQFIDLCILLGCDYCDTIKGVGPITAFELIQQYKSIENVLKHL-SDKYKVPENW 274
Query: 181 LYKEARELFRHPEVAD 196
YKEARELF HP+VAD
Sbjct: 275 KYKEARELFLHPDVAD 290
Score = 116 bits (291), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 59/112 (52%), Positives = 79/112 (70%), Gaps = 8/112 (7%)
Query: 304 ELVADVAPSSIRES-------RKICIDASMSLYQFLIAVR-SEGNQLMSVDGEPTSHLMG 355
+L+A AP S++E R I IDAS+ +YQF+ AVR + G ++ GE TSH++G
Sbjct: 8 KLLARYAPKSMKEGKIDQYSGRVIAIDASILVYQFISAVRDTTGATMVDEFGETTSHIIG 67
Query: 356 TFYRTIRLVEHGLKPIYVFDGKPPTLKSGELNKRMEKREDAQKALAKAQEQG 407
TFYRTI+L+E G+KP+YVFDGKPP +K GELNKR E + AQ+ L KA E+G
Sbjct: 68 TFYRTIKLIESGIKPVYVFDGKPPEMKDGELNKRKENAQKAQEQLDKALEEG 119
Score = 103 bits (257), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 44/68 (64%), Positives = 58/68 (85%), Gaps = 1/68 (1%)
Query: 232 FIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGWLYKEAREL 291
FIDLCILLGCDYCD+I+G+GP A ELI++++SIE +L+++ + KY VPE W YKEAREL
Sbjct: 224 FIDLCILLGCDYCDTIKGVGPITAFELIQQYKSIENVLKHL-SDKYKVPENWKYKEAREL 282
Query: 292 FRHPEIAD 299
F HP++AD
Sbjct: 283 FLHPDVAD 290
Score = 58.9 bits (141), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 24/54 (44%), Positives = 39/54 (72%)
Query: 408 KLKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSTTTQGRLDSFFTIRR 461
KL+W+ DE+G+ +YL +K+F E+R+ G +KL +S QGRLDSFF++++
Sbjct: 295 KLEWNKLDEEGIKQYLVTEKHFNEERVTKGIEKLKNVKSKKAQGRLDSFFSVKK 348
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/82 (37%), Positives = 50/82 (60%), Gaps = 6/82 (7%)
Query: 3 LKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSSTTQGRLDSFFTIRREEKRKAP 62
L+W+ DE+G+ +YL +K+F E+R+ G +KL +S QGRLDSFF++ +K P
Sbjct: 296 LEWNKLDEEGIKQYLVTEKHFNEERVTKGIEKLKNVKSKKAQGRLDSFFSV-----KKVP 350
Query: 63 CEAEAQCAAMVKAGKVYATATE 84
++++ A+ VK K A E
Sbjct: 351 L-SKSEAASGVKRKKPTTKAKE 371
>gi|449435964|ref|XP_004135764.1| PREDICTED: flap endonuclease 1-like [Cucumis sativus]
Length = 377
Score = 176 bits (447), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 81/135 (60%), Positives = 106/135 (78%)
Query: 60 KAPCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVL 119
+AP EAEAQCAA+ K GKVYA A+EDMD+LTFGS LRH+ +RK+PV EF + K+L
Sbjct: 155 EAPSEAEAQCAALCKLGKVYAVASEDMDSLTFGSPRFLRHLMDPSSRKIPVMEFEVAKIL 214
Query: 120 EGMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEG 179
E + L+ ++FIDLCIL GCDYCD+IRGIG A++LI++H SIE ILENI+ ++Y +P+
Sbjct: 215 EELNLTMDQFIDLCILSGCDYCDNIRGIGGLTALKLIRQHGSIESILENINKERYQIPDD 274
Query: 180 WLYKEARELFRHPEV 194
W YKEAR+LF+ P V
Sbjct: 275 WPYKEARQLFKEPLV 289
Score = 115 bits (289), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 62/113 (54%), Positives = 76/113 (67%), Gaps = 8/113 (7%)
Query: 304 ELVADVAPSSIRE-------SRKICIDASMSLYQFLIAVRSEGNQLMSVD-GEPTSHLMG 355
+L+AD AP ++E RKI IDASMS+YQFLI V G ++++ + GE TSHL G
Sbjct: 8 KLLADNAPKGMKEQKFEAYFGRKIAIDASMSIYQFLIVVGRSGTEMLTNEAGEVTSHLQG 67
Query: 356 TFYRTIRLVEHGLKPIYVFDGKPPTLKSGELNKRMEKREDAQKALAKAQEQGK 408
F RTIRL+E G+KP+YVFDGKPP LK EL KR KR DA + LA A E G
Sbjct: 68 MFNRTIRLLEAGIKPVYVFDGKPPDLKKQELAKRYSKRADATEDLADAIEVGN 120
Score = 96.3 bits (238), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 41/66 (62%), Positives = 54/66 (81%)
Query: 232 FIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGWLYKEAREL 291
FIDLCIL GCDYCD+IRGIG A++LI++H SIE ILENI+ ++Y +P+ W YKEAR+L
Sbjct: 224 FIDLCILSGCDYCDNIRGIGGLTALKLIRQHGSIESILENINKERYQIPDDWPYKEARQL 283
Query: 292 FRHPEI 297
F+ P +
Sbjct: 284 FKEPLV 289
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 37/54 (68%)
Query: 404 QEQGKLKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSTTTQGRLDSFF 457
+EQ +KW+ PDE+GL+ +L + F +R+ +K+ A++ ++QGR++SFF
Sbjct: 293 EEQLDIKWTTPDEEGLLTFLVNENGFNSERVTKAVEKIKAAKNKSSQGRMESFF 346
Score = 52.8 bits (125), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 35/51 (68%)
Query: 1 MTLKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSSTTQGRLDSFF 51
+ +KW+ PDE+GL+ +L + F +R+ +K+ A++ ++QGR++SFF
Sbjct: 296 LDIKWTTPDEEGLLTFLVNENGFNSERVTKAVEKIKAAKNKSSQGRMESFF 346
>gi|147838430|emb|CAN76592.1| hypothetical protein VITISV_020294 [Vitis vinifera]
Length = 978
Score = 176 bits (447), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 82/143 (57%), Positives = 114/143 (79%), Gaps = 1/143 (0%)
Query: 60 KAPCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVL 119
+AP EAEAQCAA+ K+GKVYA A+EDMD+LTFG++ LRH+ +RK+PV EF + K+L
Sbjct: 171 EAPSEAEAQCAALCKSGKVYAVASEDMDSLTFGASKFLRHLMDPSSRKIPVMEFDITKIL 230
Query: 120 EGMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEG 179
E + L+ ++FIDLCIL GCDYCDSIRGIG + A++LI++H SIE ILENI+ ++Y +P+
Sbjct: 231 EELNLTMDQFIDLCILSGCDYCDSIRGIGGQTALKLIRQHGSIENILENINRERYQIPDD 290
Query: 180 WLYKEARELFRHPEV-ADPETIE 201
W Y+EAR LF+ P+V +D E ++
Sbjct: 291 WPYQEARCLFKEPQVFSDDEQLD 313
Score = 96.7 bits (239), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 43/75 (57%), Positives = 61/75 (81%), Gaps = 1/75 (1%)
Query: 232 FIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGWLYKEAREL 291
FIDLCIL GCDYCDSIRGIG + A++LI++H SIE ILENI+ ++Y +P+ W Y+EAR L
Sbjct: 240 FIDLCILSGCDYCDSIRGIGGQTALKLIRQHGSIENILENINRERYQIPDDWPYQEARCL 299
Query: 292 FRHPEI-ADPETIEL 305
F+ P++ +D E +++
Sbjct: 300 FKEPQVFSDDEQLDI 314
Score = 74.7 bits (182), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 47/113 (41%), Positives = 61/113 (53%), Gaps = 28/113 (24%)
Query: 304 ELVADVAPSSIRE-------SRKICIDASMSLYQFLIAVRSEGNQLMSVD-GEPTSHLMG 355
+L+AD AP +++E RKI IDASMS+YQFLI V G ++++ + GE TS
Sbjct: 44 KLLADNAPKAMKEQKFESFFGRKIAIDASMSIYQFLIVVGRSGTEMLTNEAGEVTS---- 99
Query: 356 TFYRTIRLVEHGLKPIYVFDGKPPTLKSGELNKRMEKREDAQKALAKAQEQGK 408
YVFDGKPP LK EL KR +R DA + L +A E G
Sbjct: 100 ----------------YVFDGKPPDLKKQELAKRFSRRADATEDLTEALETGN 136
>gi|115402747|ref|XP_001217450.1| DNA-repair protein rad2 [Aspergillus terreus NIH2624]
gi|114189296|gb|EAU30996.1| DNA-repair protein rad2 [Aspergillus terreus NIH2624]
Length = 402
Score = 176 bits (447), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 81/139 (58%), Positives = 105/139 (75%), Gaps = 3/139 (2%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVLE 120
AP EAEAQCA + +AGKVYA A+EDMD L F + ILLRH+TFSE RK P+QE HL + LE
Sbjct: 162 APTEAEAQCAVLARAGKVYAAASEDMDTLCFEAPILLRHLTFSEQRKEPIQEIHLSRALE 221
Query: 121 GMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILE---NIDTKKYTVP 177
G+++ +FIDLCILLGCDY + I +GP A++LI++H S+EK++E N KKY +P
Sbjct: 222 GLDMDRAKFIDLCILLGCDYLEPIPKVGPNTALKLIRDHGSLEKVVEYIQNDPKKKYVIP 281
Query: 178 EGWLYKEARELFRHPEVAD 196
E W Y++ARELF HP+V D
Sbjct: 282 EDWPYQDARELFLHPDVRD 300
Score = 119 bits (298), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 60/118 (50%), Positives = 82/118 (69%), Gaps = 14/118 (11%)
Query: 304 ELVADVAPSSIRES-------RKICI-------DASMSLYQFLIAVRSEGNQLMSVDGEP 349
+++++ AP +I+ RK+ I +SMS+Y FLIAVRSEG QLMS GE
Sbjct: 8 QVISENAPDAIKAGDIKNHFGRKVAIVPSQLTPPSSMSIYSFLIAVRSEGQQLMSDTGET 67
Query: 350 TSHLMGTFYRTIRLVEHGLKPIYVFDGKPPTLKSGELNKRMEKREDAQKALAKAQEQG 407
TSHLMG FYRT+R+V++G+KP+YVFDG PP LKSGEL KR ++ +A +A +A+E G
Sbjct: 68 TSHLMGMFYRTLRMVDNGIKPLYVFDGAPPKLKSGELAKRTARKTEATEAHEEAKETG 125
Score = 90.1 bits (222), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 45/92 (48%), Positives = 62/92 (67%), Gaps = 7/92 (7%)
Query: 215 DSIRGIGPKRAIELL----YSFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILE 270
+ I+ I RA+E L FIDLCILLGCDY + I +GP A++LI++H S+EK++E
Sbjct: 209 EPIQEIHLSRALEGLDMDRAKFIDLCILLGCDYLEPIPKVGPNTALKLIRDHGSLEKVVE 268
Query: 271 ---NIDTKKYTVPEGWLYKEARELFRHPEIAD 299
N KKY +PE W Y++ARELF HP++ D
Sbjct: 269 YIQNDPKKKYVIPEDWPYQDARELFLHPDVRD 300
Score = 59.3 bits (142), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 28/60 (46%), Positives = 38/60 (63%), Gaps = 1/60 (1%)
Query: 409 LKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSTTTQGRLDSFF-TIRREEKRKS 467
KW PD +GLV++L DK F EDR+RNGA +L K T Q RL+ FF + R ++ K+
Sbjct: 308 FKWEAPDIEGLVEFLVKDKGFNEDRVRNGAARLQKNLKTAQQSRLEGFFKPVARSDEEKA 367
Score = 59.3 bits (142), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 28/60 (46%), Positives = 38/60 (63%), Gaps = 1/60 (1%)
Query: 3 LKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSSTTQGRLDSFF-TIRREEKRKA 61
KW PD +GLV++L DK F EDR+RNGA +L K + Q RL+ FF + R ++ KA
Sbjct: 308 FKWEAPDIEGLVEFLVKDKGFNEDRVRNGAARLQKNLKTAQQSRLEGFFKPVARSDEEKA 367
>gi|50292567|ref|XP_448716.1| hypothetical protein [Candida glabrata CBS 138]
gi|74608857|sp|Q6FM28.1|FEN1_CANGA RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|49528028|emb|CAG61679.1| unnamed protein product [Candida glabrata]
Length = 381
Score = 176 bits (446), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 85/146 (58%), Positives = 110/146 (75%), Gaps = 4/146 (2%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVLE 120
AP EAEAQCA + K GKVYA A+EDMD L + + LLRH+TFSEARK P+ E + E VL+
Sbjct: 153 APGEAEAQCAELAKKGKVYAAASEDMDTLCYRTPYLLRHLTFSEARKEPIHEINTEIVLQ 212
Query: 121 GMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDT----KKYTV 176
G+EL+ ++FIDL I+LGCDYCDSI+G+GP A++L+KEH S+EKI+E I++ K+ V
Sbjct: 213 GLELTIDQFIDLGIMLGCDYCDSIKGVGPVTALKLMKEHGSLEKIVEYIESGEANNKWKV 272
Query: 177 PEGWLYKEARELFRHPEVADPETIEF 202
PE W YKEARELF P+V D I+
Sbjct: 273 PENWPYKEARELFVKPDVIDANEIDL 298
Score = 128 bits (321), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 63/111 (56%), Positives = 83/111 (74%), Gaps = 8/111 (7%)
Query: 305 LVADVAPSSIRES-------RKICIDASMSLYQFLIAVRS-EGNQLMSVDGEPTSHLMGT 356
++ + PS+IR+S RK+ IDASMSLYQFLIAVR +G QL + GE TSHLMG
Sbjct: 9 IITEHVPSAIRKSDIKAFFGRKVAIDASMSLYQFLIAVRQQDGGQLSTETGETTSHLMGM 68
Query: 357 FYRTIRLVEHGLKPIYVFDGKPPTLKSGELNKRMEKREDAQKALAKAQEQG 407
FYRT+R++++G+KP YVFDGKPP LKS EL+KR +RE+ +K LA+A E+
Sbjct: 69 FYRTLRMIDNGIKPCYVFDGKPPVLKSHELDKRTSRREETEKKLAEATEEA 119
Score = 97.8 bits (242), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 69/187 (36%), Positives = 100/187 (53%), Gaps = 31/187 (16%)
Query: 126 HEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGWLYKEA 185
++E L L+G Y ++ G + EL K+ + E++DT Y P
Sbjct: 136 NDEAKKLLELMGIPYVNA-PGEAEAQCAELAKKGKVYAAASEDMDTLCYRTPY------- 187
Query: 186 RELFRHPEVADP--ETIEFIDLCILLGCDYCDSIRGIGPKRAIEL-LYSFIDLCILLGCD 242
L RH ++ E I I+ I+L + +EL + FIDL I+LGCD
Sbjct: 188 --LLRHLTFSEARKEPIHEINTEIVL--------------QGLELTIDQFIDLGIMLGCD 231
Query: 243 YCDSIRGIGPKRAIELIKEHRSIEKILENIDT----KKYTVPEGWLYKEARELFRHPEIA 298
YCDSI+G+GP A++L+KEH S+EKI+E I++ K+ VPE W YKEARELF P++
Sbjct: 232 YCDSIKGVGPVTALKLMKEHGSLEKIVEYIESGEANNKWKVPENWPYKEARELFVKPDVI 291
Query: 299 DPETIEL 305
D I+L
Sbjct: 292 DANEIDL 298
Score = 65.1 bits (157), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 27/53 (50%), Positives = 38/53 (71%)
Query: 1 MTLKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSSTTQGRLDSFFTI 53
+ LKW+ P ED L++YLC +K F+E+R+R+G K+L K S QGRLD FF +
Sbjct: 296 IDLKWTPPKEDELIQYLCHEKKFSEERVRSGIKRLQKGLKSGVQGRLDGFFKV 348
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 26/51 (50%), Positives = 37/51 (72%)
Query: 409 LKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSTTTQGRLDSFFTI 459
LKW+ P ED L++YLC +K F+E+R+R+G K+L K + QGRLD FF +
Sbjct: 298 LKWTPPKEDELIQYLCHEKKFSEERVRSGIKRLQKGLKSGVQGRLDGFFKV 348
>gi|429854713|gb|ELA29705.1| DNA-repair protein rad2 [Colletotrichum gloeosporioides Nara gc5]
Length = 394
Score = 176 bits (446), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 82/137 (59%), Positives = 107/137 (78%), Gaps = 3/137 (2%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVLE 120
AP EAEAQCA + +AGKVYA A+EDMD LTF + ILLRH+TFSE RK P+QE H++KVLE
Sbjct: 155 APTEAEAQCAVLARAGKVYAAASEDMDTLTFDTPILLRHLTFSEQRKEPIQEVHIDKVLE 214
Query: 121 GMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENI--DTK-KYTVP 177
G+ + E+F+DLCILLGCDY D I +GP A++LI+EH +++K++E I D K KY +P
Sbjct: 215 GLGMEREQFVDLCILLGCDYLDPIPKVGPSTALKLIREHGTLDKLVEAIKEDPKGKYQIP 274
Query: 178 EGWLYKEARELFRHPEV 194
E W Y++ARELF P+V
Sbjct: 275 EDWPYQDARELFFKPDV 291
Score = 133 bits (334), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 61/111 (54%), Positives = 86/111 (77%), Gaps = 7/111 (6%)
Query: 304 ELVADVAPSSIRES-------RKICIDASMSLYQFLIAVRSEGNQLMSVDGEPTSHLMGT 356
+++ + AP++I+E RK+ IDASMS+Y FLIAVRS+G QLM+ GE TSHLMG
Sbjct: 8 QIIKEEAPNAIKEGEIKAHFGRKVAIDASMSIYSFLIAVRSDGQQLMNESGETTSHLMGL 67
Query: 357 FYRTIRLVEHGLKPIYVFDGKPPTLKSGELNKRMEKREDAQKALAKAQEQG 407
FYRT+R+V++G+KP+YVFDG PP LKSGEL KR +++++A + L +A+E G
Sbjct: 68 FYRTLRMVDNGIKPLYVFDGAPPKLKSGELAKRFQRKQEANENLEEAKETG 118
Score = 82.0 bits (201), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 40/84 (47%), Positives = 58/84 (69%), Gaps = 8/84 (9%)
Query: 217 IRGIGPKRAIELLYSFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENI--DT 274
+ G+G +R F+DLCILLGCDY D I +GP A++LI+EH +++K++E I D
Sbjct: 213 LEGLGMERE-----QFVDLCILLGCDYLDPIPKVGPSTALKLIREHGTLDKLVEAIKEDP 267
Query: 275 K-KYTVPEGWLYKEARELFRHPEI 297
K KY +PE W Y++ARELF P++
Sbjct: 268 KGKYQIPEDWPYQDARELFFKPDV 291
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/60 (46%), Positives = 39/60 (65%), Gaps = 1/60 (1%)
Query: 3 LKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSSTTQGRLDSFF-TIRREEKRKA 61
KW PD DGLV++L +K F+EDR+R+ +L K S+ Q RLD FF I + E++KA
Sbjct: 301 FKWEKPDMDGLVQFLVTEKGFSEDRVRSAGARLEKNLKSSQQVRLDGFFKVIPKTEEQKA 360
Score = 55.8 bits (133), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 23/51 (45%), Positives = 33/51 (64%)
Query: 409 LKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSTTTQGRLDSFFTI 459
KW PD DGLV++L +K F+EDR+R+ +L K ++ Q RLD FF +
Sbjct: 301 FKWEKPDMDGLVQFLVTEKGFSEDRVRSAGARLEKNLKSSQQVRLDGFFKV 351
>gi|255721403|ref|XP_002545636.1| structure-specific endonuclease RAD27 [Candida tropicalis MYA-3404]
gi|317374882|sp|C5M2X8.1|FEN1_CANTT RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|240136125|gb|EER35678.1| structure-specific endonuclease RAD27 [Candida tropicalis MYA-3404]
Length = 374
Score = 176 bits (446), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 82/144 (56%), Positives = 107/144 (74%), Gaps = 2/144 (1%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVLE 120
APCEAEAQCA + + GKVYA A+EDMD L + LLRH+TF+EARK+P+ E ++ +
Sbjct: 156 APCEAEAQCAELARGGKVYAAASEDMDTLCYEPPQLLRHLTFAEARKIPIDEISYKEAMA 215
Query: 121 GMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENID--TKKYTVPE 178
G++++ E+F+DLCILLGCDYC++IRG+GP A +LIKEH S+EKI+E I+ KYTVPE
Sbjct: 216 GLDMNKEQFVDLCILLGCDYCETIRGVGPVTAYKLIKEHGSLEKIVEWIEKGNTKYTVPE 275
Query: 179 GWLYKEARELFRHPEVADPETIEF 202
W Y EARELF +PEV I
Sbjct: 276 NWPYAEARELFLNPEVKKASDISL 299
Score = 120 bits (301), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 60/113 (53%), Positives = 82/113 (72%), Gaps = 8/113 (7%)
Query: 305 LVADVAPSSIRE-------SRKICIDASMSLYQFLIAVR-SEGNQLMSVDGEPTSHLMGT 356
L+ + +P++ +E RK+ IDASM LYQFLI+VR S+G QL + DGE TSHL G
Sbjct: 9 LIKEHSPNAYKEYQLKNLFGRKVAIDASMCLYQFLISVRQSDGQQLTNDDGETTSHLSGI 68
Query: 357 FYRTIRLVEHGLKPIYVFDGKPPTLKSGELNKRMEKREDAQKALAKAQEQGKL 409
FYRTI++VE+ +KP+YVFDGKPP LK GEL KR+ +RE+AQK +++G +
Sbjct: 69 FYRTIKMVENNIKPVYVFDGKPPVLKGGELEKRLLRREEAQKQKDALKDEGTV 121
Score = 100 bits (249), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 55/124 (44%), Positives = 74/124 (59%), Gaps = 13/124 (10%)
Query: 184 EARELFRHPEVADPETIEFIDLCILLGCDYCDSIRGIGPKRAIELLYSFIDLCILLGCDY 243
E +L RH A+ I ++ Y +++ G+ + F+DLCILLGCDY
Sbjct: 187 EPPQLLRHLTFAEARKIPIDEIS------YKEAMAGLDMNKE-----QFVDLCILLGCDY 235
Query: 244 CDSIRGIGPKRAIELIKEHRSIEKILENID--TKKYTVPEGWLYKEARELFRHPEIADPE 301
C++IRG+GP A +LIKEH S+EKI+E I+ KYTVPE W Y EARELF +PE+
Sbjct: 236 CETIRGVGPVTAYKLIKEHGSLEKIVEWIEKGNTKYTVPENWPYAEARELFLNPEVKKAS 295
Query: 302 TIEL 305
I L
Sbjct: 296 DISL 299
Score = 69.7 bits (169), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 29/53 (54%), Positives = 40/53 (75%)
Query: 1 MTLKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSSTTQGRLDSFFTI 53
++LKW +PD +GL++Y+ K F+EDRIR+GA+KL K QGRLDSFFT+
Sbjct: 297 ISLKWKEPDVEGLIEYMVKGKGFSEDRIRSGAEKLKKGLKGGVQGRLDSFFTV 349
Score = 68.2 bits (165), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 29/51 (56%), Positives = 38/51 (74%)
Query: 409 LKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSTTTQGRLDSFFTI 459
LKW +PD +GL++Y+ K F+EDRIR+GA+KL K QGRLDSFFT+
Sbjct: 299 LKWKEPDVEGLIEYMVKGKGFSEDRIRSGAEKLKKGLKGGVQGRLDSFFTV 349
>gi|448102657|ref|XP_004199858.1| Piso0_002405 [Millerozyma farinosa CBS 7064]
gi|359381280|emb|CCE81739.1| Piso0_002405 [Millerozyma farinosa CBS 7064]
Length = 343
Score = 176 bits (446), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 82/146 (56%), Positives = 105/146 (71%), Gaps = 4/146 (2%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVLE 120
APCEAEAQCA + + GKV+A A+EDMD + + LLRH+T +EARKLP+ + KVLE
Sbjct: 120 APCEAEAQCAELARKGKVFAAASEDMDTICYEPPFLLRHLTVAEARKLPIDQIEYSKVLE 179
Query: 121 GMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILE----NIDTKKYTV 176
+E+ + FIDLCILLGCDYC++I+G+GP A +LIKEH S++KI+E N D KY V
Sbjct: 180 SLEMDKDTFIDLCILLGCDYCETIKGVGPVTAFKLIKEHGSLDKIVEFLRANPDKTKYKV 239
Query: 177 PEGWLYKEARELFRHPEVADPETIEF 202
PE W Y EARELF HPEV + + I
Sbjct: 240 PENWPYTEARELFLHPEVQNADDINL 265
Score = 102 bits (255), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 47/79 (59%), Positives = 59/79 (74%), Gaps = 4/79 (5%)
Query: 231 SFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILE----NIDTKKYTVPEGWLYK 286
+FIDLCILLGCDYC++I+G+GP A +LIKEH S++KI+E N D KY VPE W Y
Sbjct: 187 TFIDLCILLGCDYCETIKGVGPVTAFKLIKEHGSLDKIVEFLRANPDKTKYKVPENWPYT 246
Query: 287 EARELFRHPEIADPETIEL 305
EARELF HPE+ + + I L
Sbjct: 247 EARELFLHPEVQNADDINL 265
Score = 101 bits (251), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 47/86 (54%), Positives = 66/86 (76%), Gaps = 1/86 (1%)
Query: 326 MSLYQFLIAVR-SEGNQLMSVDGEPTSHLMGTFYRTIRLVEHGLKPIYVFDGKPPTLKSG 384
M LYQ+LIAVR +EG QL + +GE TSHL G FYRTIR+V++ +KP+YVFDGKPP LK G
Sbjct: 1 MCLYQYLIAVRQAEGQQLTNEEGETTSHLSGMFYRTIRMVDNNIKPVYVFDGKPPVLKGG 60
Query: 385 ELNKRMEKREDAQKALAKAQEQGKLK 410
EL KR+ ++E+A K + +++ ++
Sbjct: 61 ELEKRLLRKEEAIKQMENIKDEATVE 86
Score = 63.5 bits (153), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 26/53 (49%), Positives = 37/53 (69%)
Query: 1 MTLKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSSTTQGRLDSFFTI 53
+ LKW +PD +GL++Y+ K F+E+RIR+GA+KL K QGRLD FF +
Sbjct: 263 INLKWKEPDVEGLIEYMVKQKGFSEERIRSGAEKLKKGLKGGVQGRLDGFFQV 315
Score = 62.0 bits (149), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 26/51 (50%), Positives = 36/51 (70%)
Query: 409 LKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSTTTQGRLDSFFTI 459
LKW +PD +GL++Y+ K F+E+RIR+GA+KL K QGRLD FF +
Sbjct: 265 LKWKEPDVEGLIEYMVKQKGFSEERIRSGAEKLKKGLKGGVQGRLDGFFQV 315
>gi|317374926|sp|Q0CBS0.2|FEN1_ASPTN RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
Length = 395
Score = 176 bits (446), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 81/139 (58%), Positives = 105/139 (75%), Gaps = 3/139 (2%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVLE 120
AP EAEAQCA + +AGKVYA A+EDMD L F + ILLRH+TFSE RK P+QE HL + LE
Sbjct: 155 APTEAEAQCAVLARAGKVYAAASEDMDTLCFEAPILLRHLTFSEQRKEPIQEIHLSRALE 214
Query: 121 GMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILE---NIDTKKYTVP 177
G+++ +FIDLCILLGCDY + I +GP A++LI++H S+EK++E N KKY +P
Sbjct: 215 GLDMDRAKFIDLCILLGCDYLEPIPKVGPNTALKLIRDHGSLEKVVEYIQNDPKKKYVIP 274
Query: 178 EGWLYKEARELFRHPEVAD 196
E W Y++ARELF HP+V D
Sbjct: 275 EDWPYQDARELFLHPDVRD 293
Score = 130 bits (327), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 62/111 (55%), Positives = 83/111 (74%), Gaps = 7/111 (6%)
Query: 304 ELVADVAPSSIRES-------RKICIDASMSLYQFLIAVRSEGNQLMSVDGEPTSHLMGT 356
+++++ AP +I+ RK+ IDASMS+Y FLIAVRSEG QLMS GE TSHLMG
Sbjct: 8 QVISENAPDAIKAGDIKNHFGRKVAIDASMSIYSFLIAVRSEGQQLMSDTGETTSHLMGM 67
Query: 357 FYRTIRLVEHGLKPIYVFDGKPPTLKSGELNKRMEKREDAQKALAKAQEQG 407
FYRT+R+V++G+KP+YVFDG PP LKSGEL KR ++ +A +A +A+E G
Sbjct: 68 FYRTLRMVDNGIKPLYVFDGAPPKLKSGELAKRTARKTEATEAHEEAKETG 118
Score = 90.1 bits (222), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 45/92 (48%), Positives = 62/92 (67%), Gaps = 7/92 (7%)
Query: 215 DSIRGIGPKRAIELL----YSFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILE 270
+ I+ I RA+E L FIDLCILLGCDY + I +GP A++LI++H S+EK++E
Sbjct: 202 EPIQEIHLSRALEGLDMDRAKFIDLCILLGCDYLEPIPKVGPNTALKLIRDHGSLEKVVE 261
Query: 271 ---NIDTKKYTVPEGWLYKEARELFRHPEIAD 299
N KKY +PE W Y++ARELF HP++ D
Sbjct: 262 YIQNDPKKKYVIPEDWPYQDARELFLHPDVRD 293
Score = 59.3 bits (142), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 28/60 (46%), Positives = 38/60 (63%), Gaps = 1/60 (1%)
Query: 409 LKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSTTTQGRLDSFF-TIRREEKRKS 467
KW PD +GLV++L DK F EDR+RNGA +L K T Q RL+ FF + R ++ K+
Sbjct: 301 FKWEAPDIEGLVEFLVKDKGFNEDRVRNGAARLQKNLKTAQQSRLEGFFKPVARSDEEKA 360
Score = 58.9 bits (141), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 28/60 (46%), Positives = 38/60 (63%), Gaps = 1/60 (1%)
Query: 3 LKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSSTTQGRLDSFF-TIRREEKRKA 61
KW PD +GLV++L DK F EDR+RNGA +L K + Q RL+ FF + R ++ KA
Sbjct: 301 FKWEAPDIEGLVEFLVKDKGFNEDRVRNGAARLQKNLKTAQQSRLEGFFKPVARSDEEKA 360
>gi|168066677|ref|XP_001785260.1| predicted protein [Physcomitrella patens subsp. patens]
gi|317374868|sp|A9U328.1|FEN12_PHYPA RecName: Full=Flap endonuclease 1-B; Short=FEN-1-B; AltName:
Full=Flap structure-specific endonuclease 1-B
gi|162663130|gb|EDQ49912.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 349
Score = 176 bits (446), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 79/141 (56%), Positives = 108/141 (76%)
Query: 60 KAPCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVL 119
+AP EAEA+CA++ K GKVYA A+EDMD+LTFGS LRH+ +RKLPV EF + KVL
Sbjct: 155 EAPSEAEAECASLCKTGKVYAVASEDMDSLTFGSTRFLRHLMEPVSRKLPVMEFDMNKVL 214
Query: 120 EGMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEG 179
EG+ L+ ++F+DLCIL GCDY D+IRGIG + A++LI++H S+EKILEN++ +Y +P+
Sbjct: 215 EGLSLTMDQFVDLCILCGCDYIDTIRGIGAQTALKLIRQHGSLEKILENLNKDRYQIPDP 274
Query: 180 WLYKEARELFRHPEVADPETI 200
W Y+EAR LF+ P V E +
Sbjct: 275 WPYEEARRLFKEPLVTQAEDV 295
Score = 120 bits (302), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 60/113 (53%), Positives = 81/113 (71%), Gaps = 8/113 (7%)
Query: 304 ELVADVAPSSIRE-------SRKICIDASMSLYQFLIAVRSEGNQLMSVD-GEPTSHLMG 355
+L+AD AP S++E RKI IDASMS+Y FL+ V G +++ D GE TSHL+G
Sbjct: 8 KLLADNAPDSMKEQKFESYFGRKIAIDASMSIYSFLVVVGRTGTDMLTNDAGEVTSHLIG 67
Query: 356 TFYRTIRLVEHGLKPIYVFDGKPPTLKSGELNKRMEKREDAQKALAKAQEQGK 408
F RTIR++E GLKP+YVFDGKPP +K GEL KR+ +RE+A ++LA A+ +G
Sbjct: 68 MFNRTIRVLEAGLKPVYVFDGKPPEMKGGELAKRLARREEAVESLATAKLEGN 120
Score = 93.2 bits (230), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 40/82 (48%), Positives = 58/82 (70%)
Query: 232 FIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGWLYKEAREL 291
F+DLCIL GCDY D+IRGIG + A++LI++H S+EKILEN++ +Y +P+ W Y+EAR L
Sbjct: 224 FVDLCILCGCDYIDTIRGIGAQTALKLIRQHGSLEKILENLNKDRYQIPDPWPYEEARRL 283
Query: 292 FRHPEIADPETIELVADVAPSS 313
F+ P + E + AP +
Sbjct: 284 FKEPLVTQAEDVPDFKWTAPDA 305
Score = 47.0 bits (110), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 34/54 (62%)
Query: 400 LAKAQEQGKLKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSTTTQGRL 453
+ +A++ KW+ PD +GL+K+L + F DR++ KK+ A++ ++QGR
Sbjct: 289 VTQAEDVPDFKWTAPDAEGLIKFLVEENGFNHDRVQTAIKKIQLAKNKSSQGRF 342
Score = 45.8 bits (107), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 29/45 (64%)
Query: 3 LKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSSTTQGRL 47
KW+ PD +GL+K+L + F DR++ KK+ A++ ++QGR
Sbjct: 298 FKWTAPDAEGLIKFLVEENGFNHDRVQTAIKKIQLAKNKSSQGRF 342
>gi|388498254|gb|AFK37193.1| unknown [Lotus japonicus]
Length = 366
Score = 176 bits (445), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 79/135 (58%), Positives = 105/135 (77%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVLE 120
AP EAEAQCAA+ KAG VYA A+EDMD+LTFG+ LRH+ ++K+PV EF + K+LE
Sbjct: 140 APSEAEAQCAALCKAGMVYAVASEDMDSLTFGAPKFLRHLMDPSSKKVPVMEFEVAKILE 199
Query: 121 GMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGW 180
+ L+ ++FIDLCIL GCDYCD+IRGIG + A++LI++H SIE ILENI+ ++Y +PE W
Sbjct: 200 ELNLTMDQFIDLCILSGCDYCDNIRGIGGQTALKLIRQHGSIENILENINKERYQIPEDW 259
Query: 181 LYKEARELFRHPEVA 195
Y+EAR LF+ P V
Sbjct: 260 PYQEARRLFKEPMVT 274
Score = 102 bits (254), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 51/86 (59%), Positives = 63/86 (73%), Gaps = 1/86 (1%)
Query: 319 KICIDASMSLYQFLIAV-RSEGNQLMSVDGEPTSHLMGTFYRTIRLVEHGLKPIYVFDGK 377
+I IDASMS+YQFLI V RS L + GE TSHL G F RTIRL+E G+KP+YVFDGK
Sbjct: 14 QIAIDASMSIYQFLIVVGRSGAETLTNEAGEVTSHLQGMFTRTIRLLESGMKPVYVFDGK 73
Query: 378 PPTLKSGELNKRMEKREDAQKALAKA 403
PP +K EL KR+ KR +A + L++A
Sbjct: 74 PPDMKKQELAKRLSKRAEATEDLSEA 99
Score = 98.2 bits (243), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 41/67 (61%), Positives = 54/67 (80%)
Query: 232 FIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGWLYKEAREL 291
FIDLCIL GCDYCD+IRGIG + A++LI++H SIE ILENI+ ++Y +PE W Y+EAR L
Sbjct: 208 FIDLCILSGCDYCDNIRGIGGQTALKLIRQHGSIENILENINKERYQIPEDWPYQEARRL 267
Query: 292 FRHPEIA 298
F+ P +
Sbjct: 268 FKEPMVT 274
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 22/51 (43%), Positives = 35/51 (68%)
Query: 1 MTLKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSSTTQGRLDSFF 51
+ LKWS PDE+GL+ +L + F DR+ +K+ A++ ++QGRL+SFF
Sbjct: 280 LNLKWSAPDEEGLITFLVNENGFNSDRVTKAIEKIKAAKNKSSQGRLESFF 330
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 22/49 (44%), Positives = 34/49 (69%)
Query: 409 LKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSTTTQGRLDSFF 457
LKWS PDE+GL+ +L + F DR+ +K+ A++ ++QGRL+SFF
Sbjct: 282 LKWSAPDEEGLITFLVNENGFNSDRVTKAIEKIKAAKNKSSQGRLESFF 330
>gi|219125938|ref|XP_002183226.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|317374908|sp|B7G7Y7.1|FEN1_PHATC RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|217405501|gb|EEC45444.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 421
Score = 176 bits (445), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 77/126 (61%), Positives = 101/126 (80%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVLE 120
APCEAEAQ AA+ KAG VYAT TEDMDALTF + IL+R +TF+ A K VQ + KV+E
Sbjct: 160 APCEAEAQAAALCKAGLVYATGTEDMDALTFATPILVRKLTFANASKSMVQTMNYNKVIE 219
Query: 121 GMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGW 180
G+ +SH++F+DLCI+LGCDYCD+IRG+GPK A++LI+EH +IEK++E ID KK+ VPE W
Sbjct: 220 GLAISHDQFVDLCIMLGCDYCDTIRGVGPKTALKLIREHGNIEKVIETIDRKKFVVPESW 279
Query: 181 LYKEAR 186
+ E +
Sbjct: 280 VPNEKK 285
Score = 123 bits (309), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 69/130 (53%), Positives = 87/130 (66%), Gaps = 12/130 (9%)
Query: 304 ELVADVAPSSIRE-------SRKICIDASMSLYQFLIAVRSEG-NQ----LMSVDGEPTS 351
+L++D AP IRE RKI IDASM++YQFLIAVRS G NQ L + +GE TS
Sbjct: 8 KLLSDEAPDCIREVELKSLHGRKIAIDASMAIYQFLIAVRSGGPNQQATMLTNAEGETTS 67
Query: 352 HLMGTFYRTIRLVEHGLKPIYVFDGKPPTLKSGELNKRMEKREDAQKALAKAQEQGKLKW 411
H+ G F RTIR + G++P++VFDGKPP +KS EL KR EKRE AQ ALA A E+G ++
Sbjct: 68 HIQGMFNRTIRYMTEGIRPVFVFDGKPPDVKSHELIKRREKREKAQAALAVASEEGNVEE 127
Query: 412 SDPDEDGLVK 421
D LV+
Sbjct: 128 QDKQSKRLVR 137
Score = 93.2 bits (230), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 36/58 (62%), Positives = 49/58 (84%)
Query: 232 FIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGWLYKEAR 289
F+DLCI+LGCDYCD+IRG+GPK A++LI+EH +IEK++E ID KK+ VPE W+ E +
Sbjct: 228 FVDLCIMLGCDYCDTIRGVGPKTALKLIREHGNIEKVIETIDRKKFVVPESWVPNEKK 285
Score = 40.4 bits (93), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 30/54 (55%), Gaps = 2/54 (3%)
Query: 3 LKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKA--RSSTTQGRLDSFFTIR 54
LKW + L K+L D F DR++N +KL A +S Q R+DSFF ++
Sbjct: 337 LKWKPCQAEDLQKFLVDDMGFNVDRVKNNIEKLQAAYKANSKPQTRMDSFFAVK 390
Score = 39.3 bits (90), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 31/55 (56%), Gaps = 2/55 (3%)
Query: 408 KLKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKA--RSTTTQGRLDSFFTIR 460
+LKW + L K+L D F DR++N +KL A ++ Q R+DSFF ++
Sbjct: 336 ELKWKPCQAEDLQKFLVDDMGFNVDRVKNNIEKLQAAYKANSKPQTRMDSFFAVK 390
>gi|317374932|sp|B0XZ33.2|FEN1_ASPFC RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
Length = 395
Score = 176 bits (445), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 81/137 (59%), Positives = 105/137 (76%), Gaps = 3/137 (2%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVLE 120
AP EAEAQCA + +AGKVYA A+EDMD L F + ILLRH+TFSE RK P+QE HL + LE
Sbjct: 155 APTEAEAQCAVLARAGKVYAAASEDMDTLCFEAPILLRHLTFSEQRKEPIQEIHLNRALE 214
Query: 121 GMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDT---KKYTVP 177
G+ + ++FIDLCILLGCDY + I +GP A++LI+EH S+EK++E I+ KKY +P
Sbjct: 215 GLGMDRKQFIDLCILLGCDYLEPIPKVGPNTALKLIREHGSLEKVVEAIENDPKKKYVIP 274
Query: 178 EGWLYKEARELFRHPEV 194
E W Y++ARELF HP+V
Sbjct: 275 EYWPYQDARELFLHPDV 291
Score = 122 bits (305), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 57/94 (60%), Positives = 71/94 (75%), Gaps = 7/94 (7%)
Query: 303 IELVADVAPSSIRES-------RKICIDASMSLYQFLIAVRSEGNQLMSVDGEPTSHLMG 355
+++ + AP +I+ RK+ IDASMS+Y FLIAVRSEG QLMS GE TSHLMG
Sbjct: 7 FQVIQENAPDAIKAGDIKNHFGRKVAIDASMSIYSFLIAVRSEGQQLMSESGETTSHLMG 66
Query: 356 TFYRTIRLVEHGLKPIYVFDGKPPTLKSGELNKR 389
FYRT+R+V++G+KP+YVFDG PP LKSGEL KR
Sbjct: 67 MFYRTLRMVDNGIKPLYVFDGAPPKLKSGELAKR 100
Score = 90.1 bits (222), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 45/90 (50%), Positives = 62/90 (68%), Gaps = 7/90 (7%)
Query: 215 DSIRGIGPKRAIELL----YSFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILE 270
+ I+ I RA+E L FIDLCILLGCDY + I +GP A++LI+EH S+EK++E
Sbjct: 202 EPIQEIHLNRALEGLGMDRKQFIDLCILLGCDYLEPIPKVGPNTALKLIREHGSLEKVVE 261
Query: 271 NIDT---KKYTVPEGWLYKEARELFRHPEI 297
I+ KKY +PE W Y++ARELF HP++
Sbjct: 262 AIENDPKKKYVIPEYWPYQDARELFLHPDV 291
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/61 (45%), Positives = 37/61 (60%), Gaps = 2/61 (3%)
Query: 409 LKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSTTTQGRLDSFF--TIRREEKRK 466
KW PD + LV++L DK F EDR+RNGA +L K T Q RL+ FF R +E++
Sbjct: 301 FKWEAPDVEALVEFLVKDKGFNEDRVRNGAARLQKNLKTAQQSRLEGFFKPVARTDEEKA 360
Query: 467 S 467
S
Sbjct: 361 S 361
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/60 (45%), Positives = 37/60 (61%), Gaps = 1/60 (1%)
Query: 3 LKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSSTTQGRLDSFF-TIRREEKRKA 61
KW PD + LV++L DK F EDR+RNGA +L K + Q RL+ FF + R ++ KA
Sbjct: 301 FKWEAPDVEALVEFLVKDKGFNEDRVRNGAARLQKNLKTAQQSRLEGFFKPVARTDEEKA 360
>gi|317374927|sp|Q4WWJ1.2|FEN1_ASPFU RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
Length = 395
Score = 176 bits (445), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 81/137 (59%), Positives = 105/137 (76%), Gaps = 3/137 (2%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVLE 120
AP EAEAQCA + +AGKVYA A+EDMD L F + ILLRH+TFSE RK P+QE HL + LE
Sbjct: 155 APTEAEAQCAVLARAGKVYAAASEDMDTLCFEAPILLRHLTFSEQRKEPIQEIHLNRALE 214
Query: 121 GMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDT---KKYTVP 177
G+ + ++FIDLCILLGCDY + I +GP A++LI+EH S+EK++E I+ KKY +P
Sbjct: 215 GLGMDRKQFIDLCILLGCDYLEPIPKVGPNTALKLIREHGSLEKVVEAIENDPKKKYVIP 274
Query: 178 EGWLYKEARELFRHPEV 194
E W Y++ARELF HP+V
Sbjct: 275 EYWPYQDARELFLHPDV 291
Score = 121 bits (304), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 57/94 (60%), Positives = 71/94 (75%), Gaps = 7/94 (7%)
Query: 303 IELVADVAPSSIRES-------RKICIDASMSLYQFLIAVRSEGNQLMSVDGEPTSHLMG 355
+++ + AP +I+ RK+ IDASMS+Y FLIAVRSEG QLMS GE TSHLMG
Sbjct: 7 FQVIQENAPDAIKAGDIKNHFGRKVAIDASMSIYSFLIAVRSEGQQLMSESGETTSHLMG 66
Query: 356 TFYRTIRLVEHGLKPIYVFDGKPPTLKSGELNKR 389
FYRT+R+V++G+KP+YVFDG PP LKSGEL KR
Sbjct: 67 MFYRTLRMVDNGIKPLYVFDGAPPKLKSGELAKR 100
Score = 90.1 bits (222), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 45/90 (50%), Positives = 62/90 (68%), Gaps = 7/90 (7%)
Query: 215 DSIRGIGPKRAIELL----YSFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILE 270
+ I+ I RA+E L FIDLCILLGCDY + I +GP A++LI+EH S+EK++E
Sbjct: 202 EPIQEIHLNRALEGLGMDRKQFIDLCILLGCDYLEPIPKVGPNTALKLIREHGSLEKVVE 261
Query: 271 NIDT---KKYTVPEGWLYKEARELFRHPEI 297
I+ KKY +PE W Y++ARELF HP++
Sbjct: 262 AIENDPKKKYVIPEYWPYQDARELFLHPDV 291
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/61 (45%), Positives = 37/61 (60%), Gaps = 2/61 (3%)
Query: 409 LKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSTTTQGRLDSFF--TIRREEKRK 466
KW PD + LV++L DK F EDR+RNGA +L K T Q RL+ FF R +E++
Sbjct: 301 FKWEAPDVEALVEFLVKDKGFNEDRVRNGATRLQKNLKTAQQSRLEGFFKPVARTDEEKA 360
Query: 467 S 467
S
Sbjct: 361 S 361
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/60 (45%), Positives = 37/60 (61%), Gaps = 1/60 (1%)
Query: 3 LKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSSTTQGRLDSFF-TIRREEKRKA 61
KW PD + LV++L DK F EDR+RNGA +L K + Q RL+ FF + R ++ KA
Sbjct: 301 FKWEAPDVEALVEFLVKDKGFNEDRVRNGATRLQKNLKTAQQSRLEGFFKPVARTDEEKA 360
>gi|255543058|ref|XP_002512592.1| flap endonuclease-1, putative [Ricinus communis]
gi|223548553|gb|EEF50044.1| flap endonuclease-1, putative [Ricinus communis]
Length = 345
Score = 176 bits (445), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 83/143 (58%), Positives = 108/143 (75%), Gaps = 1/143 (0%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVLE 120
AP EAEA+CAA+ K+GKVYA A+EDMD+LTFG+ LRH+ +RK+PV EF K+LE
Sbjct: 118 APSEAEAECAALCKSGKVYAVASEDMDSLTFGAPRFLRHLMDPSSRKVPVMEFETSKILE 177
Query: 121 GMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGW 180
+ L+ ++FIDLCIL GCDYCDSIRGIG A++LI++H SIE ILEN++ ++Y +PE W
Sbjct: 178 ELNLTMDQFIDLCILSGCDYCDSIRGIGGMTALKLIRQHGSIENILENMNKERYQIPEDW 237
Query: 181 LYKEARELFRHPEV-ADPETIEF 202
Y+EAR LF+ P V AD E E
Sbjct: 238 PYQEARRLFKEPLVLADEEEPEL 260
Score = 99.0 bits (245), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 46/75 (61%), Positives = 58/75 (77%), Gaps = 1/75 (1%)
Query: 232 FIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGWLYKEAREL 291
FIDLCIL GCDYCDSIRGIG A++LI++H SIE ILEN++ ++Y +PE W Y+EAR L
Sbjct: 186 FIDLCILSGCDYCDSIRGIGGMTALKLIRQHGSIENILENMNKERYQIPEDWPYQEARRL 245
Query: 292 FRHPEI-ADPETIEL 305
F+ P + AD E EL
Sbjct: 246 FKEPLVLADEEEPEL 260
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 38/54 (70%)
Query: 404 QEQGKLKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSTTTQGRLDSFF 457
+E+ +LKW+ PD++GL+ +L + F DR+ +K+ A++ ++QGRL+SFF
Sbjct: 255 EEEPELKWTAPDQEGLITFLVNENGFNNDRVTKAIEKIKAAKNKSSQGRLESFF 308
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 34/49 (69%)
Query: 3 LKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSSTTQGRLDSFF 51
LKW+ PD++GL+ +L + F DR+ +K+ A++ ++QGRL+SFF
Sbjct: 260 LKWTAPDQEGLITFLVNENGFNNDRVTKAIEKIKAAKNKSSQGRLESFF 308
Score = 47.8 bits (112), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 26/57 (45%), Positives = 38/57 (66%), Gaps = 8/57 (14%)
Query: 304 ELVADVAPSSIRE-------SRKICIDASMSLYQFLIAVRSEGNQLMSVD-GEPTSH 352
+L+AD AP +++E RKI IDASMS+YQFLI V G ++++ + GE TS+
Sbjct: 8 KLLADNAPKAMKEQKFESYFGRKIAIDASMSIYQFLIVVGRSGTEMLTNEAGEVTSY 64
>gi|354546051|emb|CCE42780.1| hypothetical protein CPAR2_204230 [Candida parapsilosis]
Length = 383
Score = 175 bits (444), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 79/146 (54%), Positives = 106/146 (72%), Gaps = 4/146 (2%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVLE 120
APCEAEAQCA + + GKVYA A+EDMD L + LLRH+TF+EARK+P+ + + +E
Sbjct: 156 APCEAEAQCAELARGGKVYAAASEDMDTLCYEPPYLLRHLTFAEARKMPIDQITYSEAME 215
Query: 121 GMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILE----NIDTKKYTV 176
G+ + ++FIDLCILLGCDYC++I+G+GP A +LIKEH S++ ++E N D K+ V
Sbjct: 216 GLGMPKDQFIDLCILLGCDYCETIKGVGPVTAYKLIKEHGSLDNLVEYLQNNPDKTKFKV 275
Query: 177 PEGWLYKEARELFRHPEVADPETIEF 202
PE W YKEARELF HPEV + +E
Sbjct: 276 PENWPYKEARELFLHPEVMEASKVEL 301
Score = 125 bits (313), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 62/114 (54%), Positives = 84/114 (73%), Gaps = 8/114 (7%)
Query: 304 ELVADVAPSSIRE-------SRKICIDASMSLYQFLIAVR-SEGNQLMSVDGEPTSHLMG 355
+L+ + +P + +E RK+ IDASM LYQFLIAVR S+G QL + DGE TSHL G
Sbjct: 8 QLIKEHSPHAYKEFQLKNLFGRKVAIDASMCLYQFLIAVRQSDGQQLTNEDGETTSHLSG 67
Query: 356 TFYRTIRLVEHGLKPIYVFDGKPPTLKSGELNKRMEKREDAQKALAKAQEQGKL 409
FYRTIR+VE+ +KP+YVFDGKPP LK GEL KR+ +RE+AQK + + +++G +
Sbjct: 68 FFYRTIRMVENNIKPVYVFDGKPPVLKGGELEKRLLRREEAQKQMDQIKDEGSV 121
Score = 103 bits (256), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 50/98 (51%), Positives = 67/98 (68%), Gaps = 11/98 (11%)
Query: 213 YCDSIRGIG-PKRAIELLYSFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILE- 270
Y +++ G+G PK FIDLCILLGCDYC++I+G+GP A +LIKEH S++ ++E
Sbjct: 210 YSEAMEGLGMPKD------QFIDLCILLGCDYCETIKGVGPVTAYKLIKEHGSLDNLVEY 263
Query: 271 ---NIDTKKYTVPEGWLYKEARELFRHPEIADPETIEL 305
N D K+ VPE W YKEARELF HPE+ + +EL
Sbjct: 264 LQNNPDKTKFKVPENWPYKEARELFLHPEVMEASKVEL 301
Score = 67.4 bits (163), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 28/51 (54%), Positives = 37/51 (72%)
Query: 3 LKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSSTTQGRLDSFFTI 53
LKW +PD DGL++Y+ K F+EDRIR+GA+KL K QGRLD FF++
Sbjct: 301 LKWKEPDVDGLIEYMVKQKGFSEDRIRSGAEKLKKGLKGGVQGRLDGFFSV 351
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 28/51 (54%), Positives = 37/51 (72%)
Query: 409 LKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSTTTQGRLDSFFTI 459
LKW +PD DGL++Y+ K F+EDRIR+GA+KL K QGRLD FF++
Sbjct: 301 LKWKEPDVDGLIEYMVKQKGFSEDRIRSGAEKLKKGLKGGVQGRLDGFFSV 351
>gi|322708426|gb|EFZ00004.1| DNA-repair protein rad2 [Metarhizium anisopliae ARSEF 23]
Length = 395
Score = 175 bits (444), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 79/137 (57%), Positives = 105/137 (76%), Gaps = 3/137 (2%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVLE 120
AP EAEAQCA + +AGKVYA A+EDMD L F + ILLRH+TFSE RK P+QE HL+KVLE
Sbjct: 155 APTEAEAQCAVLARAGKVYAAASEDMDTLCFNTPILLRHLTFSEQRKEPIQEIHLDKVLE 214
Query: 121 GMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENID---TKKYTVP 177
G+ + +F+DLCILLGCDY D + +GP A++LI+EH ++E +++ I+ KKYT+P
Sbjct: 215 GLNMERSQFVDLCILLGCDYLDPVPKVGPTTALKLIREHGTLENVVDAIEKDSKKKYTLP 274
Query: 178 EGWLYKEARELFRHPEV 194
E W YK+AR+LF P+V
Sbjct: 275 EDWPYKDARDLFFEPDV 291
Score = 132 bits (333), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 61/112 (54%), Positives = 85/112 (75%), Gaps = 7/112 (6%)
Query: 303 IELVADVAPSSIRES-------RKICIDASMSLYQFLIAVRSEGNQLMSVDGEPTSHLMG 355
+++ + AP +I+E RK+ IDASMS+Y FLIAVRS+G QLM+ GE TSHLMG
Sbjct: 7 FQIIKEEAPEAIKEGEIKNHFGRKVAIDASMSIYSFLIAVRSDGQQLMNDSGETTSHLMG 66
Query: 356 TFYRTIRLVEHGLKPIYVFDGKPPTLKSGELNKRMEKREDAQKALAKAQEQG 407
FYRT+R+V++G+KP+YVFDG PP LKSGEL KR +++++A + L +A+E G
Sbjct: 67 MFYRTLRMVDNGIKPLYVFDGAPPKLKSGELAKRFQRKQEATEGLEEAKETG 118
Score = 84.3 bits (207), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 35/69 (50%), Positives = 52/69 (75%), Gaps = 3/69 (4%)
Query: 232 FIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENID---TKKYTVPEGWLYKEA 288
F+DLCILLGCDY D + +GP A++LI+EH ++E +++ I+ KKYT+PE W YK+A
Sbjct: 223 FVDLCILLGCDYLDPVPKVGPTTALKLIREHGTLENVVDAIEKDSKKKYTLPEDWPYKDA 282
Query: 289 RELFRHPEI 297
R+LF P++
Sbjct: 283 RDLFFEPDV 291
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 23/49 (46%), Positives = 31/49 (63%)
Query: 409 LKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSTTTQGRLDSFF 457
KW PD +GLV +L +K F+EDR+R A +L K T+ Q RL+ FF
Sbjct: 301 FKWDKPDVEGLVTFLVTEKGFSEDRVRGAAARLEKNLKTSQQARLEGFF 349
Score = 53.1 bits (126), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 22/49 (44%), Positives = 31/49 (63%)
Query: 3 LKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSSTTQGRLDSFF 51
KW PD +GLV +L +K F+EDR+R A +L K ++ Q RL+ FF
Sbjct: 301 FKWDKPDVEGLVTFLVTEKGFSEDRVRGAAARLEKNLKTSQQARLEGFF 349
>gi|440301029|gb|ELP93476.1| Flap endonuclease, putative [Entamoeba invadens IP1]
Length = 374
Score = 175 bits (444), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 81/144 (56%), Positives = 111/144 (77%), Gaps = 2/144 (1%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVLE 120
A CEAE CA +VK+GK +ATATEDMDALT GS+I+LR + S+ +K P++E+ L+ +LE
Sbjct: 156 ANCEAEGTCAELVKSGKCFATATEDMDALTLGSDIVLRKFSASDNKKEPIREYSLKSILE 215
Query: 121 GMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGW 180
+ + FIDLCILLGCDYC++I+GIGP A E+IKE+++IE +L+++D KY VP+GW
Sbjct: 216 ETGFTMDMFIDLCILLGCDYCETIKGIGPVTAFEMIKEYKTIENLLKHLDKGKYIVPDGW 275
Query: 181 LYKEARELFRHPEV--ADPETIEF 202
YKEAR LF HP+V AD T+E+
Sbjct: 276 KYKEARNLFLHPDVTKADNITLEW 299
Score = 107 bits (266), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 44/74 (59%), Positives = 59/74 (79%)
Query: 232 FIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGWLYKEAREL 291
FIDLCILLGCDYC++I+GIGP A E+IKE+++IE +L+++D KY VP+GW YKEAR L
Sbjct: 224 FIDLCILLGCDYCETIKGIGPVTAFEMIKEYKTIENLLKHLDKGKYIVPDGWKYKEARNL 283
Query: 292 FRHPEIADPETIEL 305
F HP++ + I L
Sbjct: 284 FLHPDVTKADNITL 297
Score = 105 bits (261), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 54/112 (48%), Positives = 78/112 (69%), Gaps = 8/112 (7%)
Query: 304 ELVADVAPSSIRES-------RKICIDASMSLYQFLIAVRS-EGNQLMSVDGEPTSHLMG 355
+L+ AP+S+++ R + IDAS+ +YQF+ AVR EG+ L++ GE TSH++G
Sbjct: 8 KLLQRYAPNSMKDGKIDQYFGRVVAIDASILVYQFISAVRDQEGSTLVNEYGETTSHIIG 67
Query: 356 TFYRTIRLVEHGLKPIYVFDGKPPTLKSGELNKRMEKREDAQKALAKAQEQG 407
TFYRTI+L+ G+KPIYVFDGKPP +K+ EL KR ++A + L KA+E G
Sbjct: 68 TFYRTIKLMTSGVKPIYVFDGKPPEMKTEELKKRQTNAKEAIEKLEKAKESG 119
Score = 64.7 bits (156), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 29/72 (40%), Positives = 48/72 (66%), Gaps = 5/72 (6%)
Query: 1 MTLKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSSTTQGRLDSFFTIRREEKRK 60
+TL+W P+E+ L+KYL +K+F E+R+++G +K+ + +S TQGRLDSFF + +K
Sbjct: 295 ITLEWKKPNEEELLKYLVTEKHFNEERVKSGIQKMKEIKSKGTQGRLDSFFKV-----KK 349
Query: 61 APCEAEAQCAAM 72
AP E + +
Sbjct: 350 APLEKSSASKGV 361
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 26/61 (42%), Positives = 43/61 (70%)
Query: 409 LKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSTTTQGRLDSFFTIRREEKRKSR 468
L+W P+E+ L+KYL +K+F E+R+++G +K+ + +S TQGRLDSFF +++ KS
Sbjct: 297 LEWKKPNEEELLKYLVTEKHFNEERVKSGIQKMKEIKSKGTQGRLDSFFKVKKAPLEKSS 356
Query: 469 C 469
Sbjct: 357 A 357
>gi|301117906|ref|XP_002906681.1| flap endonuclease 1 [Phytophthora infestans T30-4]
gi|317374909|sp|D0MY34.1|FEN1_PHYIT RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|262108030|gb|EEY66082.1| flap endonuclease 1 [Phytophthora infestans T30-4]
Length = 389
Score = 175 bits (444), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 85/165 (51%), Positives = 110/165 (66%), Gaps = 18/165 (10%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVLE 120
APCEAEA CAA+ K G+VYA TEDMDALTFG +L R +T S A+K+P+ E LE+ L+
Sbjct: 161 APCEAEASCAALAKGGRVYAAGTEDMDALTFGVPVLYRRLTVSPAKKIPILEIRLERALQ 220
Query: 121 GMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENID---TKKYTVP 177
+E++HE+F+DLCIL GCDYCDSIRG+GPK+A IKEH+SIE LE + +K +P
Sbjct: 221 ELEMTHEQFVDLCILCGCDYCDSIRGVGPKKAYAGIKEHKSIENFLEVLQKNKSKGVVIP 280
Query: 178 EGWL-----YKEARELFRHPEVA----------DPETIEFIDLCI 207
+ WL YK ARE+F PEV DP+ E +D +
Sbjct: 281 DEWLGENPIYKNAREMFIKPEVVDAKETEIKWRDPQETELVDFLV 325
Score = 124 bits (311), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 64/118 (54%), Positives = 84/118 (71%), Gaps = 13/118 (11%)
Query: 303 IELVADVAPSSIRESRK--------ICIDASMSLYQFLIAVRSE-----GNQLMSVDGEP 349
++L+ + APS I+E K + IDASM+LYQFLIA+RS L + DGE
Sbjct: 7 MKLLQEEAPSCIKEVEKMSALAGHAVAIDASMALYQFLIAIRSADGGGPSQALTNADGEV 66
Query: 350 TSHLMGTFYRTIRLVEHGLKPIYVFDGKPPTLKSGELNKRMEKREDAQKALAKAQEQG 407
TSHL G F RTIR++E+GLKP+YVFDGKPP +KSGEL KR ++R++AQKAL +A E+G
Sbjct: 67 TSHLQGMFSRTIRMMENGLKPVYVFDGKPPVMKSGELAKRSDRRQEAQKALEEATEKG 124
Score = 89.4 bits (220), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 43/82 (52%), Positives = 55/82 (67%), Gaps = 8/82 (9%)
Query: 232 FIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENID---TKKYTVPEGWL---- 284
F+DLCIL GCDYCDSIRG+GPK+A IKEH+SIE LE + +K +P+ WL
Sbjct: 229 FVDLCILCGCDYCDSIRGVGPKKAYAGIKEHKSIENFLEVLQKNKSKGVVIPDEWLGENP 288
Query: 285 -YKEARELFRHPEIADPETIEL 305
YK ARE+F PE+ D + E+
Sbjct: 289 IYKNAREMFIKPEVVDAKETEI 310
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/52 (46%), Positives = 34/52 (65%)
Query: 408 KLKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSTTTQGRLDSFFTI 459
++KW DP E LV +L F EDR+ + +L K++ST +Q RLDSFFT+
Sbjct: 309 EIKWRDPQETELVDFLVKKHGFQEDRVLSAITRLKKSKSTQSQKRLDSFFTV 360
Score = 53.5 bits (127), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 23/51 (45%), Positives = 33/51 (64%)
Query: 3 LKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSSTTQGRLDSFFTI 53
+KW DP E LV +L F EDR+ + +L K++S+ +Q RLDSFFT+
Sbjct: 310 IKWRDPQETELVDFLVKKHGFQEDRVLSAITRLKKSKSTQSQKRLDSFFTV 360
>gi|317374948|sp|Q0UZR3.3|FEN1_PHANO RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
Length = 396
Score = 175 bits (444), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 81/138 (58%), Positives = 107/138 (77%), Gaps = 4/138 (2%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVLE 120
AP EAEAQCA + + GKVYA A+EDMD LTF + ILLRH+TFSE RK P+ E HL+KVLE
Sbjct: 155 APTEAEAQCATLARGGKVYAAASEDMDTLTFNTPILLRHLTFSEQRKEPILEIHLDKVLE 214
Query: 121 GMELSHE--EFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENI--DTKKYTV 176
G+E+ E +FIDLCILLGCDY D I+GIGP A++LI++H+++E ++ +I D KK T+
Sbjct: 215 GLEMEREQPQFIDLCILLGCDYLDPIKGIGPSTALKLIRDHKTLEGVVAHIQSDQKKLTL 274
Query: 177 PEGWLYKEARELFRHPEV 194
PE W + +AR+LF P+V
Sbjct: 275 PEDWPFADARQLFLEPDV 292
Score = 120 bits (302), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 56/97 (57%), Positives = 74/97 (76%), Gaps = 7/97 (7%)
Query: 304 ELVADVAPSSIRES-------RKICIDASMSLYQFLIAVRSEGNQLMSVDGEPTSHLMGT 356
+L+ + +P +I+ RK+ IDASMS+Y FLIAVRS+G QLMS GE TSHLMG
Sbjct: 8 QLIQEHSPDAIKTGEIKNQFGRKVAIDASMSIYSFLIAVRSDGQQLMSETGETTSHLMGL 67
Query: 357 FYRTIRLVEHGLKPIYVFDGKPPTLKSGELNKRMEKR 393
FYRT+R+V++G+KP+YVFDG PP LKSGEL KR +++
Sbjct: 68 FYRTLRMVDNGIKPLYVFDGAPPKLKSGELAKRFQRK 104
Score = 86.7 bits (213), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 36/68 (52%), Positives = 53/68 (77%), Gaps = 2/68 (2%)
Query: 232 FIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENI--DTKKYTVPEGWLYKEAR 289
FIDLCILLGCDY D I+GIGP A++LI++H+++E ++ +I D KK T+PE W + +AR
Sbjct: 225 FIDLCILLGCDYLDPIKGIGPSTALKLIRDHKTLEGVVAHIQSDQKKLTLPEDWPFADAR 284
Query: 290 ELFRHPEI 297
+LF P++
Sbjct: 285 QLFLEPDV 292
Score = 60.8 bits (146), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/66 (46%), Positives = 41/66 (62%), Gaps = 1/66 (1%)
Query: 3 LKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSSTTQGRLDSFF-TIRREEKRKA 61
KW PD +GLVK+L +K+F EDR+RNGA KL K S Q RL+ FF + R + KA
Sbjct: 302 FKWEAPDIEGLVKFLVEEKHFNEDRVRNGAAKLQKNMKSAQQSRLEGFFKPVERTPEEKA 361
Query: 62 PCEAEA 67
+ +A
Sbjct: 362 SLKRKA 367
Score = 58.9 bits (141), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 26/49 (53%), Positives = 33/49 (67%)
Query: 409 LKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSTTTQGRLDSFF 457
KW PD +GLVK+L +K+F EDR+RNGA KL K + Q RL+ FF
Sbjct: 302 FKWEAPDIEGLVKFLVEEKHFNEDRVRNGAAKLQKNMKSAQQSRLEGFF 350
>gi|297812863|ref|XP_002874315.1| hypothetical protein ARALYDRAFT_489493 [Arabidopsis lyrata subsp.
lyrata]
gi|297320152|gb|EFH50574.1| hypothetical protein ARALYDRAFT_489493 [Arabidopsis lyrata subsp.
lyrata]
Length = 448
Score = 175 bits (444), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 79/138 (57%), Positives = 107/138 (77%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVLE 120
A EAEAQCAA+ K+GKVY A+EDMD+LTFG+ LRH+ +RK+PV EF + K+LE
Sbjct: 156 ATSEAEAQCAALCKSGKVYGVASEDMDSLTFGAPKFLRHLMDPSSRKIPVMEFEVAKILE 215
Query: 121 GMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGW 180
++L+ ++FIDLCIL GCDYCDSIRGIG + A++LI++H SIE ILEN++ ++Y +PE W
Sbjct: 216 ELQLTMDQFIDLCILSGCDYCDSIRGIGGQTALKLIRQHGSIETILENLNKERYQIPEEW 275
Query: 181 LYKEARELFRHPEVADPE 198
Y EAR+LF+ P+V E
Sbjct: 276 PYNEARKLFKEPDVITDE 293
Score = 114 bits (285), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 61/112 (54%), Positives = 75/112 (66%), Gaps = 8/112 (7%)
Query: 304 ELVADVAPSSIRE-------SRKICIDASMSLYQFLIAVRSEGNQLMSVD-GEPTSHLMG 355
+L+AD APS ++E RKI +DASMS+YQFLI V G ++++ + GE TSHL G
Sbjct: 8 KLLADNAPSCMKEQKFESYFGRKIAVDASMSIYQFLIVVGRTGTEMLTNEAGEVTSHLQG 67
Query: 356 TFYRTIRLVEHGLKPIYVFDGKPPTLKSGELNKRMEKREDAQKALAKAQEQG 407
F RTIRL+E G+KP+YVFDGKPP LK EL KR KR DA L A E G
Sbjct: 68 MFNRTIRLLEAGIKPVYVFDGKPPELKRQELAKRYSKRADATADLTGAIEAG 119
Score = 99.4 bits (246), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 44/75 (58%), Positives = 60/75 (80%), Gaps = 1/75 (1%)
Query: 232 FIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGWLYKEAREL 291
FIDLCIL GCDYCDSIRGIG + A++LI++H SIE ILEN++ ++Y +PE W Y EAR+L
Sbjct: 224 FIDLCILSGCDYCDSIRGIGGQTALKLIRQHGSIETILENLNKERYQIPEEWPYNEARKL 283
Query: 292 FRHPE-IADPETIEL 305
F+ P+ I D E +++
Sbjct: 284 FKEPDVITDEEQLDI 298
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 38/54 (70%)
Query: 404 QEQGKLKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSTTTQGRLDSFF 457
+EQ +KW+ PDE+G+V++L + F DR+ +K+ A++ ++QGRL+SFF
Sbjct: 293 EEQLDIKWTSPDEEGIVQFLVNENGFNIDRVTKAIEKIKTAKNKSSQGRLESFF 346
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 36/51 (70%)
Query: 1 MTLKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSSTTQGRLDSFF 51
+ +KW+ PDE+G+V++L + F DR+ +K+ A++ ++QGRL+SFF
Sbjct: 296 LDIKWTSPDEEGIVQFLVNENGFNIDRVTKAIEKIKTAKNKSSQGRLESFF 346
>gi|169599851|ref|XP_001793348.1| hypothetical protein SNOG_02751 [Phaeosphaeria nodorum SN15]
gi|160705335|gb|EAT89482.2| hypothetical protein SNOG_02751 [Phaeosphaeria nodorum SN15]
Length = 377
Score = 175 bits (443), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 81/138 (58%), Positives = 107/138 (77%), Gaps = 4/138 (2%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVLE 120
AP EAEAQCA + + GKVYA A+EDMD LTF + ILLRH+TFSE RK P+ E HL+KVLE
Sbjct: 136 APTEAEAQCATLARGGKVYAAASEDMDTLTFNTPILLRHLTFSEQRKEPILEIHLDKVLE 195
Query: 121 GMELSHE--EFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENI--DTKKYTV 176
G+E+ E +FIDLCILLGCDY D I+GIGP A++LI++H+++E ++ +I D KK T+
Sbjct: 196 GLEMEREQPQFIDLCILLGCDYLDPIKGIGPSTALKLIRDHKTLEGVVAHIQSDQKKLTL 255
Query: 177 PEGWLYKEARELFRHPEV 194
PE W + +AR+LF P+V
Sbjct: 256 PEDWPFADARQLFLEPDV 273
Score = 86.3 bits (212), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 36/68 (52%), Positives = 53/68 (77%), Gaps = 2/68 (2%)
Query: 232 FIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENI--DTKKYTVPEGWLYKEAR 289
FIDLCILLGCDY D I+GIGP A++LI++H+++E ++ +I D KK T+PE W + +AR
Sbjct: 206 FIDLCILLGCDYLDPIKGIGPSTALKLIRDHKTLEGVVAHIQSDQKKLTLPEDWPFADAR 265
Query: 290 ELFRHPEI 297
+LF P++
Sbjct: 266 QLFLEPDV 273
Score = 82.0 bits (201), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 35/52 (67%), Positives = 44/52 (84%)
Query: 342 LMSVDGEPTSHLMGTFYRTIRLVEHGLKPIYVFDGKPPTLKSGELNKRMEKR 393
LMS GE TSHLMG FYRT+R+V++G+KP+YVFDG PP LKSGEL KR +++
Sbjct: 34 LMSETGETTSHLMGLFYRTLRMVDNGIKPLYVFDGAPPKLKSGELAKRFQRK 85
Score = 60.8 bits (146), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/66 (46%), Positives = 41/66 (62%), Gaps = 1/66 (1%)
Query: 3 LKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSSTTQGRLDSFF-TIRREEKRKA 61
KW PD +GLVK+L +K+F EDR+RNGA KL K S Q RL+ FF + R + KA
Sbjct: 283 FKWEAPDIEGLVKFLVEEKHFNEDRVRNGAAKLQKNMKSAQQSRLEGFFKPVERTPEEKA 342
Query: 62 PCEAEA 67
+ +A
Sbjct: 343 SLKRKA 348
Score = 59.3 bits (142), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 26/49 (53%), Positives = 33/49 (67%)
Query: 409 LKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSTTTQGRLDSFF 457
KW PD +GLVK+L +K+F EDR+RNGA KL K + Q RL+ FF
Sbjct: 283 FKWEAPDIEGLVKFLVEEKHFNEDRVRNGAAKLQKNMKSAQQSRLEGFF 331
>gi|295663294|ref|XP_002792200.1| DNA-repair protein rad2 [Paracoccidioides sp. 'lutzii' Pb01]
gi|226279375|gb|EEH34941.1| DNA-repair protein rad2 [Paracoccidioides sp. 'lutzii' Pb01]
Length = 381
Score = 175 bits (443), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 81/137 (59%), Positives = 106/137 (77%), Gaps = 3/137 (2%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVLE 120
AP EAEAQCA + +AGKVYA A+EDMD L F S ILLRH+TFSE RK P+ E HL++VLE
Sbjct: 141 APTEAEAQCAVLARAGKVYAAASEDMDTLCFDSPILLRHLTFSEQRKEPILEIHLDRVLE 200
Query: 121 GMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDT---KKYTVP 177
+++ ++F+DLCILLGCDY D I IGP A++LI++H S+EK++E I++ KKY +P
Sbjct: 201 DLDMDRKQFVDLCILLGCDYLDPIPKIGPNTALKLIRDHGSLEKVVEAIESDPKKKYVIP 260
Query: 178 EGWLYKEARELFRHPEV 194
E W YK+ARELF P+V
Sbjct: 261 EDWPYKDARELFFDPDV 277
Score = 108 bits (269), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 47/69 (68%), Positives = 58/69 (84%)
Query: 325 SMSLYQFLIAVRSEGNQLMSVDGEPTSHLMGTFYRTIRLVEHGLKPIYVFDGKPPTLKSG 384
SMS+Y FL+AVRS+G QLMS GE TSHLMG FYRT+R+V++G+KP+YVFDG PP LKSG
Sbjct: 22 SMSIYSFLVAVRSDGQQLMSETGETTSHLMGMFYRTLRIVDNGIKPVYVFDGAPPKLKSG 81
Query: 385 ELNKRMEKR 393
EL KR ++
Sbjct: 82 ELAKRFMRK 90
Score = 89.0 bits (219), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 39/69 (56%), Positives = 53/69 (76%), Gaps = 3/69 (4%)
Query: 232 FIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDT---KKYTVPEGWLYKEA 288
F+DLCILLGCDY D I IGP A++LI++H S+EK++E I++ KKY +PE W YK+A
Sbjct: 209 FVDLCILLGCDYLDPIPKIGPNTALKLIRDHGSLEKVVEAIESDPKKKYVIPEDWPYKDA 268
Query: 289 RELFRHPEI 297
RELF P++
Sbjct: 269 RELFFDPDV 277
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/73 (38%), Positives = 44/73 (60%), Gaps = 1/73 (1%)
Query: 409 LKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSTTTQGRLDSFF-TIRREEKRKS 467
KW PD +GLVK+L +K F+EDR+RN A +L K T Q RL+ FF I + ++ K+
Sbjct: 287 FKWEAPDVEGLVKFLVEEKAFSEDRVRNAAARLQKNLKTAQQSRLEGFFKPIAKTQEEKA 346
Query: 468 RCQYQCQYQCQYQ 480
+ + + + + Q
Sbjct: 347 TLKRKHEEKIELQ 359
Score = 55.8 bits (133), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 24/49 (48%), Positives = 32/49 (65%)
Query: 3 LKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSSTTQGRLDSFF 51
KW PD +GLVK+L +K F+EDR+RN A +L K + Q RL+ FF
Sbjct: 287 FKWEAPDVEGLVKFLVEEKAFSEDRVRNAAARLQKNLKTAQQSRLEGFF 335
>gi|238481386|ref|NP_001154740.1| flap endonuclease-1 [Arabidopsis thaliana]
gi|317374929|sp|O65251.2|FEN1_ARATH RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|332006194|gb|AED93577.1| flap endonuclease-1 [Arabidopsis thaliana]
Length = 383
Score = 175 bits (443), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 79/138 (57%), Positives = 107/138 (77%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVLE 120
A EAEAQCAA+ K+GKVY A+EDMD+LTFG+ LRH+ +RK+PV EF + K+LE
Sbjct: 156 ATSEAEAQCAALCKSGKVYGVASEDMDSLTFGAPKFLRHLMDPSSRKIPVMEFEVAKILE 215
Query: 121 GMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGW 180
++L+ ++FIDLCIL GCDYCDSIRGIG + A++LI++H SIE ILEN++ ++Y +PE W
Sbjct: 216 ELQLTMDQFIDLCILSGCDYCDSIRGIGGQTALKLIRQHGSIETILENLNKERYQIPEEW 275
Query: 181 LYKEARELFRHPEVADPE 198
Y EAR+LF+ P+V E
Sbjct: 276 PYNEARKLFKEPDVITDE 293
Score = 114 bits (285), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 61/112 (54%), Positives = 75/112 (66%), Gaps = 8/112 (7%)
Query: 304 ELVADVAPSSIRE-------SRKICIDASMSLYQFLIAVRSEGNQLMSVD-GEPTSHLMG 355
+L+AD APS ++E RKI +DASMS+YQFLI V G ++++ + GE TSHL G
Sbjct: 8 KLLADNAPSCMKEQKFESYFGRKIAVDASMSIYQFLIVVGRTGTEMLTNEAGEVTSHLQG 67
Query: 356 TFYRTIRLVEHGLKPIYVFDGKPPTLKSGELNKRMEKREDAQKALAKAQEQG 407
F RTIRL+E G+KP+YVFDGKPP LK EL KR KR DA L A E G
Sbjct: 68 MFNRTIRLLEAGIKPVYVFDGKPPELKRQELAKRYSKRADATADLTGAIEAG 119
Score = 99.8 bits (247), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 44/75 (58%), Positives = 60/75 (80%), Gaps = 1/75 (1%)
Query: 232 FIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGWLYKEAREL 291
FIDLCIL GCDYCDSIRGIG + A++LI++H SIE ILEN++ ++Y +PE W Y EAR+L
Sbjct: 224 FIDLCILSGCDYCDSIRGIGGQTALKLIRQHGSIETILENLNKERYQIPEEWPYNEARKL 283
Query: 292 FRHPE-IADPETIEL 305
F+ P+ I D E +++
Sbjct: 284 FKEPDVITDEEQLDI 298
Score = 56.6 bits (135), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 38/54 (70%)
Query: 404 QEQGKLKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSTTTQGRLDSFF 457
+EQ +KW+ PDE+G+V++L + F DR+ +K+ A++ ++QGRL+SFF
Sbjct: 293 EEQLDIKWTSPDEEGIVQFLVNENGFNIDRVTKAIEKIKTAKNKSSQGRLESFF 346
Score = 55.1 bits (131), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 36/51 (70%)
Query: 1 MTLKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSSTTQGRLDSFF 51
+ +KW+ PDE+G+V++L + F DR+ +K+ A++ ++QGRL+SFF
Sbjct: 296 LDIKWTSPDEEGIVQFLVNENGFNIDRVTKAIEKIKTAKNKSSQGRLESFF 346
>gi|159128014|gb|EDP53129.1| Flap endonuclease, putative [Aspergillus fumigatus A1163]
Length = 394
Score = 175 bits (443), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 81/137 (59%), Positives = 105/137 (76%), Gaps = 3/137 (2%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVLE 120
AP EAEAQCA + +AGKVYA A+EDMD L F + ILLRH+TFSE RK P+QE HL + LE
Sbjct: 154 APTEAEAQCAVLARAGKVYAAASEDMDTLCFEAPILLRHLTFSEQRKEPIQEIHLNRALE 213
Query: 121 GMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDT---KKYTVP 177
G+ + ++FIDLCILLGCDY + I +GP A++LI+EH S+EK++E I+ KKY +P
Sbjct: 214 GLGMDRKQFIDLCILLGCDYLEPIPKVGPNTALKLIREHGSLEKVVEAIENDPKKKYVIP 273
Query: 178 EGWLYKEARELFRHPEV 194
E W Y++ARELF HP+V
Sbjct: 274 EYWPYQDARELFLHPDV 290
Score = 104 bits (260), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 47/67 (70%), Positives = 55/67 (82%)
Query: 326 MSLYQFLIAVRSEGNQLMSVDGEPTSHLMGTFYRTIRLVEHGLKPIYVFDGKPPTLKSGE 385
M +Y FLIAVRSEG QLMS GE TSHLMG FYRT+R+V++G+KP+YVFDG PP LKSGE
Sbjct: 36 MYIYSFLIAVRSEGQQLMSESGETTSHLMGMFYRTLRMVDNGIKPLYVFDGAPPKLKSGE 95
Query: 386 LNKRMEK 392
L KR +
Sbjct: 96 LAKRTAR 102
Score = 89.7 bits (221), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 45/90 (50%), Positives = 62/90 (68%), Gaps = 7/90 (7%)
Query: 215 DSIRGIGPKRAIELL----YSFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILE 270
+ I+ I RA+E L FIDLCILLGCDY + I +GP A++LI+EH S+EK++E
Sbjct: 201 EPIQEIHLNRALEGLGMDRKQFIDLCILLGCDYLEPIPKVGPNTALKLIREHGSLEKVVE 260
Query: 271 NIDT---KKYTVPEGWLYKEARELFRHPEI 297
I+ KKY +PE W Y++ARELF HP++
Sbjct: 261 AIENDPKKKYVIPEYWPYQDARELFLHPDV 290
Score = 57.8 bits (138), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/61 (45%), Positives = 37/61 (60%), Gaps = 2/61 (3%)
Query: 409 LKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSTTTQGRLDSFF--TIRREEKRK 466
KW PD + LV++L DK F EDR+RNGA +L K T Q RL+ FF R +E++
Sbjct: 300 FKWEAPDVEALVEFLVKDKGFNEDRVRNGAARLQKNLKTAQQSRLEGFFKPVARTDEEKA 359
Query: 467 S 467
S
Sbjct: 360 S 360
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 27/60 (45%), Positives = 37/60 (61%), Gaps = 1/60 (1%)
Query: 3 LKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSSTTQGRLDSFF-TIRREEKRKA 61
KW PD + LV++L DK F EDR+RNGA +L K + Q RL+ FF + R ++ KA
Sbjct: 300 FKWEAPDVEALVEFLVKDKGFNEDRVRNGAARLQKNLKTAQQSRLEGFFKPVARTDEEKA 359
>gi|71000637|ref|XP_755000.1| Flap endonuclease Rad27 [Aspergillus fumigatus Af293]
gi|66852637|gb|EAL92962.1| Flap endonuclease Rad27, putative [Aspergillus fumigatus Af293]
Length = 394
Score = 175 bits (443), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 81/137 (59%), Positives = 105/137 (76%), Gaps = 3/137 (2%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVLE 120
AP EAEAQCA + +AGKVYA A+EDMD L F + ILLRH+TFSE RK P+QE HL + LE
Sbjct: 154 APTEAEAQCAVLARAGKVYAAASEDMDTLCFEAPILLRHLTFSEQRKEPIQEIHLNRALE 213
Query: 121 GMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDT---KKYTVP 177
G+ + ++FIDLCILLGCDY + I +GP A++LI+EH S+EK++E I+ KKY +P
Sbjct: 214 GLGMDRKQFIDLCILLGCDYLEPIPKVGPNTALKLIREHGSLEKVVEAIENDPKKKYVIP 273
Query: 178 EGWLYKEARELFRHPEV 194
E W Y++ARELF HP+V
Sbjct: 274 EYWPYQDARELFLHPDV 290
Score = 104 bits (260), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 47/67 (70%), Positives = 55/67 (82%)
Query: 326 MSLYQFLIAVRSEGNQLMSVDGEPTSHLMGTFYRTIRLVEHGLKPIYVFDGKPPTLKSGE 385
M +Y FLIAVRSEG QLMS GE TSHLMG FYRT+R+V++G+KP+YVFDG PP LKSGE
Sbjct: 36 MYIYSFLIAVRSEGQQLMSESGETTSHLMGMFYRTLRMVDNGIKPLYVFDGAPPKLKSGE 95
Query: 386 LNKRMEK 392
L KR +
Sbjct: 96 LAKRTAR 102
Score = 89.7 bits (221), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 45/90 (50%), Positives = 62/90 (68%), Gaps = 7/90 (7%)
Query: 215 DSIRGIGPKRAIELL----YSFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILE 270
+ I+ I RA+E L FIDLCILLGCDY + I +GP A++LI+EH S+EK++E
Sbjct: 201 EPIQEIHLNRALEGLGMDRKQFIDLCILLGCDYLEPIPKVGPNTALKLIREHGSLEKVVE 260
Query: 271 NIDT---KKYTVPEGWLYKEARELFRHPEI 297
I+ KKY +PE W Y++ARELF HP++
Sbjct: 261 AIENDPKKKYVIPEYWPYQDARELFLHPDV 290
Score = 57.8 bits (138), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/61 (45%), Positives = 37/61 (60%), Gaps = 2/61 (3%)
Query: 409 LKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSTTTQGRLDSFF--TIRREEKRK 466
KW PD + LV++L DK F EDR+RNGA +L K T Q RL+ FF R +E++
Sbjct: 300 FKWEAPDVEALVEFLVKDKGFNEDRVRNGATRLQKNLKTAQQSRLEGFFKPVARTDEEKA 359
Query: 467 S 467
S
Sbjct: 360 S 360
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 27/60 (45%), Positives = 37/60 (61%), Gaps = 1/60 (1%)
Query: 3 LKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSSTTQGRLDSFF-TIRREEKRKA 61
KW PD + LV++L DK F EDR+RNGA +L K + Q RL+ FF + R ++ KA
Sbjct: 300 FKWEAPDVEALVEFLVKDKGFNEDRVRNGATRLQKNLKTAQQSRLEGFFKPVARTDEEKA 359
>gi|116203453|ref|XP_001227537.1| conserved hypothetical protein [Chaetomium globosum CBS 148.51]
gi|88175738|gb|EAQ83206.1| conserved hypothetical protein [Chaetomium globosum CBS 148.51]
Length = 378
Score = 175 bits (443), Expect = 7e-41, Method: Compositional matrix adjust.
Identities = 79/137 (57%), Positives = 105/137 (76%), Gaps = 3/137 (2%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVLE 120
AP EAEAQCA + +AGKVYA A+EDMD L F + ILLRH+TFSE RK P+QE H+EKVLE
Sbjct: 138 APTEAEAQCAVLARAGKVYAAASEDMDTLCFNTPILLRHLTFSEQRKEPIQEIHVEKVLE 197
Query: 121 GMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILE---NIDTKKYTVP 177
G+ + ++F+DLCILLGCDY D I +GP A++LI+EH S+EK++E N +YTVP
Sbjct: 198 GLNMERKQFVDLCILLGCDYLDPIPKVGPSTALKLIREHGSLEKVVEFMKNDPKSRYTVP 257
Query: 178 EGWLYKEARELFRHPEV 194
+ W +++AR+LF P+V
Sbjct: 258 DDWPFEDARDLFFSPDV 274
Score = 118 bits (296), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 52/83 (62%), Positives = 69/83 (83%)
Query: 325 SMSLYQFLIAVRSEGNQLMSVDGEPTSHLMGTFYRTIRLVEHGLKPIYVFDGKPPTLKSG 384
SMS+Y FLIAVRS+G QLM+ GE TSHLMG FYRT+R+V++G+KP+YVFDG PP LKSG
Sbjct: 19 SMSIYSFLIAVRSDGQQLMNESGETTSHLMGMFYRTLRMVDNGIKPLYVFDGAPPKLKSG 78
Query: 385 ELNKRMEKREDAQKALAKAQEQG 407
EL KR +++++A + L +A+E G
Sbjct: 79 ELAKRFQRKQEANEGLEEAKETG 101
Score = 82.8 bits (203), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 35/69 (50%), Positives = 51/69 (73%), Gaps = 3/69 (4%)
Query: 232 FIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILE---NIDTKKYTVPEGWLYKEA 288
F+DLCILLGCDY D I +GP A++LI+EH S+EK++E N +YTVP+ W +++A
Sbjct: 206 FVDLCILLGCDYLDPIPKVGPSTALKLIREHGSLEKVVEFMKNDPKSRYTVPDDWPFEDA 265
Query: 289 RELFRHPEI 297
R+LF P++
Sbjct: 266 RDLFFSPDV 274
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 23/51 (45%), Positives = 34/51 (66%)
Query: 3 LKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSSTTQGRLDSFFTI 53
KW PD +GLVK+L +K F+EDR+R+G +L K S+ Q R++ FF +
Sbjct: 284 FKWDKPDMEGLVKFLVQEKGFSEDRVRSGGARLEKNLKSSQQSRIEGFFKV 334
Score = 55.8 bits (133), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 22/51 (43%), Positives = 34/51 (66%)
Query: 409 LKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSTTTQGRLDSFFTI 459
KW PD +GLVK+L +K F+EDR+R+G +L K ++ Q R++ FF +
Sbjct: 284 FKWDKPDMEGLVKFLVQEKGFSEDRVRSGGARLEKNLKSSQQSRIEGFFKV 334
>gi|407851500|gb|EKG05394.1| hypothetical protein TCSYLVIO_003532 [Trypanosoma cruzi]
Length = 393
Score = 174 bits (442), Expect = 7e-41, Method: Compositional matrix adjust.
Identities = 80/143 (55%), Positives = 108/143 (75%)
Query: 60 KAPCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVL 119
+AP EAEAQCA +VK K +A ATEDMDALTFG+ ++LRH+T+SEA+K P+ EFHL+++L
Sbjct: 158 QAPSEAEAQCAELVKKNKAWAVATEDMDALTFGAPVMLRHLTYSEAKKRPIAEFHLDEIL 217
Query: 120 EGMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEG 179
L+ +FIDLCILLGCDY I GIGP++A E IK+H IE +L+++D +++VPEG
Sbjct: 218 GITGLTMTQFIDLCILLGCDYVPKISGIGPQKAWEGIKKHGDIETLLQSLDAGRHSVPEG 277
Query: 180 WLYKEARELFRHPEVADPETIEF 202
+ Y+EAR+ F PEV E IE
Sbjct: 278 FHYEEARQFFLKPEVTPAEEIEI 300
Score = 112 bits (280), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 56/115 (48%), Positives = 82/115 (71%), Gaps = 11/115 (9%)
Query: 304 ELVADVAPSSIRE-------SRKICIDASMSLYQFLIAVRS----EGNQLMSVDGEPTSH 352
+L+ D +P++IRE R+I IDASM++YQF+IA++ +G +L + GE TSH
Sbjct: 8 KLLYDRSPAAIRERELKNYFGRRIAIDASMTIYQFIIAMKGFQDGQGMELTNEAGEVTSH 67
Query: 353 LMGTFYRTIRLVEHGLKPIYVFDGKPPTLKSGELNKRMEKREDAQKALAKAQEQG 407
L G F RT+R+V+ GL+PIYVFDGKPPTLK+ EL +R ++ E+AQ+ A+E+G
Sbjct: 68 LNGLFARTLRMVDEGLRPIYVFDGKPPTLKASELQERRQRAEEAQQLFDTAKEEG 122
Score = 91.7 bits (226), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 40/77 (51%), Positives = 56/77 (72%)
Query: 229 LYSFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGWLYKEA 288
+ FIDLCILLGCDY I GIGP++A E IK+H IE +L+++D +++VPEG+ Y+EA
Sbjct: 224 MTQFIDLCILLGCDYVPKISGIGPQKAWEGIKKHGDIETLLQSLDAGRHSVPEGFHYEEA 283
Query: 289 RELFRHPEIADPETIEL 305
R+ F PE+ E IE+
Sbjct: 284 RQFFLKPEVTPAEEIEI 300
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/65 (43%), Positives = 43/65 (66%)
Query: 3 LKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSSTTQGRLDSFFTIRREEKRKAP 62
+++ +PDE+GLVK+L +K F +DR+ G ++L A + TQGRLD F TI R +
Sbjct: 300 IQFREPDEEGLVKFLVEEKLFNKDRVLKGIQRLRNALTRKTQGRLDQFLTITRPVTKPNT 359
Query: 63 CEAEA 67
C+A+A
Sbjct: 360 CDAKA 364
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 44/69 (63%)
Query: 405 EQGKLKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSTTTQGRLDSFFTIRREEK 464
E+ ++++ +PDE+GLVK+L +K F +DR+ G ++L A + TQGRLD F TI R
Sbjct: 296 EEIEIQFREPDEEGLVKFLVEEKLFNKDRVLKGIQRLRNALTRKTQGRLDQFLTITRPVT 355
Query: 465 RKSRCQYQC 473
+ + C +
Sbjct: 356 KPNTCDAKA 364
>gi|396499081|ref|XP_003845386.1| similar to flap endonuclease 1 [Leptosphaeria maculans JN3]
gi|312221967|emb|CBY01907.1| similar to flap endonuclease 1 [Leptosphaeria maculans JN3]
Length = 423
Score = 174 bits (442), Expect = 8e-41, Method: Compositional matrix adjust.
Identities = 82/144 (56%), Positives = 107/144 (74%), Gaps = 6/144 (4%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVLE 120
AP EAEAQCA + + GKVYA A+EDMD LTF S ILLRH+TFSE RK P+ E HL+KVLE
Sbjct: 183 APTEAEAQCAVLARGGKVYAAASEDMDTLTFNSPILLRHLTFSEQRKEPILEIHLDKVLE 242
Query: 121 GMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTK---KYTVP 177
G+ + +FIDLCILLGCDY D I+GIGP A++LI+EH+ +E ++++I ++ K T+P
Sbjct: 243 GLAMDRTQFIDLCILLGCDYLDPIKGIGPSTALKLIREHKDLEGVVKHIQSQPKGKLTIP 302
Query: 178 EGWLYKEARELFRHPEVA---DPE 198
E W + +AR LF P+V DPE
Sbjct: 303 EDWPFADARLLFLEPDVRPADDPE 326
Score = 120 bits (300), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 56/97 (57%), Positives = 73/97 (75%), Gaps = 7/97 (7%)
Query: 304 ELVADVAPSSIRES-------RKICIDASMSLYQFLIAVRSEGNQLMSVDGEPTSHLMGT 356
+L+ + AP +I+ RK+ IDASMS+Y FLIAVRS G QLM+ GE TSHLMG
Sbjct: 36 QLIQEHAPDAIKAGEIKNQFGRKVAIDASMSIYSFLIAVRSGGEQLMNESGETTSHLMGL 95
Query: 357 FYRTIRLVEHGLKPIYVFDGKPPTLKSGELNKRMEKR 393
FYRT+R+V++G+KP+YVFDG PP LKSGEL KR +++
Sbjct: 96 FYRTLRMVDNGIKPLYVFDGAPPKLKSGELAKRFQRK 132
Score = 84.3 bits (207), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 38/76 (50%), Positives = 55/76 (72%), Gaps = 6/76 (7%)
Query: 232 FIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTK---KYTVPEGWLYKEA 288
FIDLCILLGCDY D I+GIGP A++LI+EH+ +E ++++I ++ K T+PE W + +A
Sbjct: 251 FIDLCILLGCDYLDPIKGIGPSTALKLIREHKDLEGVVKHIQSQPKGKLTIPEDWPFADA 310
Query: 289 RELFRHPEIA---DPE 301
R LF P++ DPE
Sbjct: 311 RLLFLEPDVRPADDPE 326
Score = 62.8 bits (151), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 30/63 (47%), Positives = 42/63 (66%), Gaps = 1/63 (1%)
Query: 409 LKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSTTTQGRLDSFF-TIRREEKRKS 467
KW PD +GLVK+L +K+F+EDR+RNGA KL K T Q RL+ FF I++ E+ K+
Sbjct: 329 FKWEAPDVEGLVKFLVEEKHFSEDRVRNGAAKLNKNMKTAQQSRLEGFFKPIQKTEEEKA 388
Query: 468 RCQ 470
+
Sbjct: 389 SLK 391
Score = 62.4 bits (150), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 30/60 (50%), Positives = 41/60 (68%), Gaps = 1/60 (1%)
Query: 3 LKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSSTTQGRLDSFF-TIRREEKRKA 61
KW PD +GLVK+L +K+F+EDR+RNGA KL K + Q RL+ FF I++ E+ KA
Sbjct: 329 FKWEAPDVEGLVKFLVEEKHFSEDRVRNGAAKLNKNMKTAQQSRLEGFFKPIQKTEEEKA 388
>gi|294658624|ref|XP_460967.2| DEHA2F13882p [Debaryomyces hansenii CBS767]
gi|317374925|sp|Q6BLF4.2|FEN1_DEBHA RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|202953266|emb|CAG89325.2| DEHA2F13882p [Debaryomyces hansenii CBS767]
Length = 379
Score = 174 bits (442), Expect = 8e-41, Method: Compositional matrix adjust.
Identities = 80/146 (54%), Positives = 104/146 (71%), Gaps = 4/146 (2%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVLE 120
APCEAEAQCA + + GKV+A A+EDMD + + LLRH+TFSEARK+P+ + EKVLE
Sbjct: 156 APCEAEAQCAELARGGKVFAAASEDMDTICYQPPFLLRHLTFSEARKMPIDQIQYEKVLE 215
Query: 121 GMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILE----NIDTKKYTV 176
+E+ E FIDLCILLGCDYC++IRG+GP A +LIKEH S++KI+E N D + V
Sbjct: 216 ALEMDRETFIDLCILLGCDYCETIRGVGPVTAFKLIKEHGSLDKIVEYLTNNPDKTNFKV 275
Query: 177 PEGWLYKEARELFRHPEVADPETIEF 202
PE W Y EAR+LF +P+ D +
Sbjct: 276 PEDWPYDEARKLFINPDTIDASEVNL 301
Score = 122 bits (306), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 63/114 (55%), Positives = 81/114 (71%), Gaps = 8/114 (7%)
Query: 304 ELVADVAPSSIRE-------SRKICIDASMSLYQFLIAVR-SEGNQLMSVDGEPTSHLMG 355
+L+ + AP + +E RKI IDASM LYQFLIAVR +EG QL + +GE TSHL G
Sbjct: 8 QLIKEHAPEAFKEFQLKNLFGRKIAIDASMCLYQFLIAVRQAEGQQLTNDEGETTSHLSG 67
Query: 356 TFYRTIRLVEHGLKPIYVFDGKPPTLKSGELNKRMEKREDAQKALAKAQEQGKL 409
FYRTIRLVE+ +KP+YVFDGKPP LK GEL KR+ +RE+A K +++G +
Sbjct: 68 MFYRTIRLVENSIKPVYVFDGKPPVLKGGELEKRLLRREEAIKQRENIKDEGTI 121
Score = 94.0 bits (232), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 43/79 (54%), Positives = 56/79 (70%), Gaps = 4/79 (5%)
Query: 231 SFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILE----NIDTKKYTVPEGWLYK 286
+FIDLCILLGCDYC++IRG+GP A +LIKEH S++KI+E N D + VPE W Y
Sbjct: 223 TFIDLCILLGCDYCETIRGVGPVTAFKLIKEHGSLDKIVEYLTNNPDKTNFKVPEDWPYD 282
Query: 287 EARELFRHPEIADPETIEL 305
EAR+LF +P+ D + L
Sbjct: 283 EARKLFINPDTIDASEVNL 301
Score = 65.1 bits (157), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 27/51 (52%), Positives = 37/51 (72%)
Query: 1 MTLKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSSTTQGRLDSFF 51
+ LKW +PD +GL++Y+ +K F+EDRIR+GA+KL K QGRLD FF
Sbjct: 299 VNLKWKEPDVEGLIQYMVKEKGFSEDRIRSGAEKLKKGLKGGVQGRLDGFF 349
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 27/49 (55%), Positives = 36/49 (73%)
Query: 409 LKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSTTTQGRLDSFF 457
LKW +PD +GL++Y+ +K F+EDRIR+GA+KL K QGRLD FF
Sbjct: 301 LKWKEPDVEGLIQYMVKEKGFSEDRIRSGAEKLKKGLKGGVQGRLDGFF 349
>gi|412993680|emb|CCO14191.1| predicted protein [Bathycoccus prasinos]
Length = 390
Score = 174 bits (441), Expect = 9e-41, Method: Compositional matrix adjust.
Identities = 81/142 (57%), Positives = 107/142 (75%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVLE 120
APCEAEA CAAM KAG V+ ATEDMD LTF L+R++ ++K + E+ +KVL+
Sbjct: 156 APCEAEATCAAMCKAGLVHGAATEDMDTLTFACPRLIRNLMAPASQKKDIAEYDFDKVLK 215
Query: 121 GMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGW 180
G++L +++FIDLCIL GCDY DSIRGIGP A++LI+E+++IE ILENI KKY VPE +
Sbjct: 216 GLDLDYDQFIDLCILCGCDYTDSIRGIGPVTALQLIREYKNIETILENIKDKKYVVPENF 275
Query: 181 LYKEARELFRHPEVADPETIEF 202
+YKEAR+LF+ PEV D +E
Sbjct: 276 MYKEARQLFKEPEVIDTNNLEL 297
Score = 109 bits (273), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 50/83 (60%), Positives = 65/83 (78%), Gaps = 1/83 (1%)
Query: 224 RAIELLYS-FIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEG 282
+ ++L Y FIDLCIL GCDY DSIRGIGP A++LI+E+++IE ILENI KKY VPE
Sbjct: 215 KGLDLDYDQFIDLCILCGCDYTDSIRGIGPVTALQLIREYKNIETILENIKDKKYVVPEN 274
Query: 283 WLYKEARELFRHPEIADPETIEL 305
++YKEAR+LF+ PE+ D +EL
Sbjct: 275 FMYKEARQLFKEPEVIDTNNLEL 297
Score = 106 bits (265), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 52/91 (57%), Positives = 68/91 (74%), Gaps = 1/91 (1%)
Query: 318 RKICIDASMSLYQFLIAV-RSEGNQLMSVDGEPTSHLMGTFYRTIRLVEHGLKPIYVFDG 376
RKI IDASM +YQ+L+ V RS +QL +G+ T+HL+G RT R++E G+KP+YVFDG
Sbjct: 29 RKIAIDASMHIYQYLMVVGRSGESQLTDENGQVTAHLIGVLSRTCRMLEAGIKPVYVFDG 88
Query: 377 KPPTLKSGELNKRMEKREDAQKALAKAQEQG 407
KPPTLK GEL KR +KR+ A+K L A+E G
Sbjct: 89 KPPTLKGGELAKRKDKRDQAEKDLEVARETG 119
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 39/52 (75%), Gaps = 1/52 (1%)
Query: 1 MTLKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSST-TQGRLDSFF 51
+ LKWS P+E+G++++L +K+F E+R+RN ++ KA++ +Q RL+SFF
Sbjct: 295 LELKWSKPNEEGVIEFLVKEKSFNEERVRNALARIKKAKAGVASQNRLESFF 346
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/50 (44%), Positives = 38/50 (76%), Gaps = 1/50 (2%)
Query: 409 LKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARS-TTTQGRLDSFF 457
LKWS P+E+G++++L +K+F E+R+RN ++ KA++ +Q RL+SFF
Sbjct: 297 LKWSKPNEEGVIEFLVKEKSFNEERVRNALARIKKAKAGVASQNRLESFF 346
>gi|389637772|ref|XP_003716519.1| DNA-repair protein rad2 [Magnaporthe oryzae 70-15]
gi|317374924|sp|A4QS18.2|FEN1_MAGO7 RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|351642338|gb|EHA50200.1| DNA-repair protein rad2 [Magnaporthe oryzae 70-15]
Length = 394
Score = 174 bits (441), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 80/136 (58%), Positives = 106/136 (77%), Gaps = 2/136 (1%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVLE 120
AP EAEAQCA + +AGKV+A A+EDMD L F S ILLRH+TFSEARK P+QE H++KVLE
Sbjct: 155 APTEAEAQCAVLARAGKVFAAASEDMDTLCFDSPILLRHLTFSEARKEPIQEIHVDKVLE 214
Query: 121 GMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTK--KYTVPE 178
G+++ ++F+DLCILLGCDY D I +GP A++LI+EH S+E I+E + KYTVPE
Sbjct: 215 GLDMDRKQFVDLCILLGCDYLDPIPKVGPSTALKLIREHGSLETIVEKMKKGELKYTVPE 274
Query: 179 GWLYKEARELFRHPEV 194
W +++AR+LF +P V
Sbjct: 275 DWPFEDARDLFFNPAV 290
Score = 124 bits (311), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 57/110 (51%), Positives = 82/110 (74%), Gaps = 7/110 (6%)
Query: 305 LVADVAPSSIRES-------RKICIDASMSLYQFLIAVRSEGNQLMSVDGEPTSHLMGTF 357
++ + AP++I+ RK+ IDASMS+Y FLIAVRS G L + DG+ TSHLMG F
Sbjct: 9 IIKENAPAAIKTGEIKNQFGRKVAIDASMSIYSFLIAVRSNGEMLTNEDGQTTSHLMGMF 68
Query: 358 YRTIRLVEHGLKPIYVFDGKPPTLKSGELNKRMEKREDAQKALAKAQEQG 407
YRT+R+V++G+KP+YVFDG PP LKSGEL +R +++++A + L +A+E G
Sbjct: 69 YRTLRMVDNGIKPLYVFDGAPPKLKSGELARRYQRKQEALEGLEEARETG 118
Score = 82.0 bits (201), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 36/68 (52%), Positives = 50/68 (73%), Gaps = 2/68 (2%)
Query: 232 FIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTK--KYTVPEGWLYKEAR 289
F+DLCILLGCDY D I +GP A++LI+EH S+E I+E + KYTVPE W +++AR
Sbjct: 223 FVDLCILLGCDYLDPIPKVGPSTALKLIREHGSLETIVEKMKKGELKYTVPEDWPFEDAR 282
Query: 290 ELFRHPEI 297
+LF +P +
Sbjct: 283 DLFFNPAV 290
Score = 60.1 bits (144), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/49 (55%), Positives = 34/49 (69%)
Query: 409 LKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSTTTQGRLDSFF 457
KW PD +GLVKYL +K F+EDR+R GA +L KA T+ Q RL+ FF
Sbjct: 300 FKWEKPDVEGLVKYLVTEKGFSEDRVRPGALRLEKALGTSQQQRLEGFF 348
Score = 60.1 bits (144), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 30/62 (48%), Positives = 40/62 (64%), Gaps = 2/62 (3%)
Query: 2 TLKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSSTTQGRLDSFF--TIRREEKR 59
KW PD +GLVKYL +K F+EDR+R GA +L KA ++ Q RL+ FF R E++
Sbjct: 299 NFKWEKPDVEGLVKYLVTEKGFSEDRVRPGALRLEKALGTSQQQRLEGFFKPVARTAEEQ 358
Query: 60 KA 61
KA
Sbjct: 359 KA 360
>gi|42570539|ref|NP_850877.2| flap endonuclease-1 [Arabidopsis thaliana]
gi|332006193|gb|AED93576.1| flap endonuclease-1 [Arabidopsis thaliana]
Length = 453
Score = 174 bits (441), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 78/134 (58%), Positives = 106/134 (79%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVLE 120
A EAEAQCAA+ K+GKVY A+EDMD+LTFG+ LRH+ +RK+PV EF + K+LE
Sbjct: 156 ATSEAEAQCAALCKSGKVYGVASEDMDSLTFGAPKFLRHLMDPSSRKIPVMEFEVAKILE 215
Query: 121 GMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGW 180
++L+ ++FIDLCIL GCDYCDSIRGIG + A++LI++H SIE ILEN++ ++Y +PE W
Sbjct: 216 ELQLTMDQFIDLCILSGCDYCDSIRGIGGQTALKLIRQHGSIETILENLNKERYQIPEEW 275
Query: 181 LYKEARELFRHPEV 194
Y EAR+LF+ P+V
Sbjct: 276 PYNEARKLFKEPDV 289
Score = 114 bits (284), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 61/112 (54%), Positives = 75/112 (66%), Gaps = 8/112 (7%)
Query: 304 ELVADVAPSSIRE-------SRKICIDASMSLYQFLIAVRSEGNQLMSVD-GEPTSHLMG 355
+L+AD APS ++E RKI +DASMS+YQFLI V G ++++ + GE TSHL G
Sbjct: 8 KLLADNAPSCMKEQKFESYFGRKIAVDASMSIYQFLIVVGRTGTEMLTNEAGEVTSHLQG 67
Query: 356 TFYRTIRLVEHGLKPIYVFDGKPPTLKSGELNKRMEKREDAQKALAKAQEQG 407
F RTIRL+E G+KP+YVFDGKPP LK EL KR KR DA L A E G
Sbjct: 68 MFNRTIRLLEAGIKPVYVFDGKPPELKRQELAKRYSKRADATADLTGAIEAG 119
Score = 98.6 bits (244), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 44/75 (58%), Positives = 60/75 (80%), Gaps = 1/75 (1%)
Query: 232 FIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGWLYKEAREL 291
FIDLCIL GCDYCDSIRGIG + A++LI++H SIE ILEN++ ++Y +PE W Y EAR+L
Sbjct: 224 FIDLCILSGCDYCDSIRGIGGQTALKLIRQHGSIETILENLNKERYQIPEEWPYNEARKL 283
Query: 292 FRHPE-IADPETIEL 305
F+ P+ I D E +++
Sbjct: 284 FKEPDVITDEEQLDI 298
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 38/54 (70%)
Query: 404 QEQGKLKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSTTTQGRLDSFF 457
+EQ +KW+ PDE+G+V++L + F DR+ +K+ A++ ++QGRL+SFF
Sbjct: 293 EEQLDIKWTSPDEEGIVQFLVNENGFNIDRVTKAIEKIKTAKNKSSQGRLESFF 346
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 36/51 (70%)
Query: 1 MTLKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSSTTQGRLDSFF 51
+ +KW+ PDE+G+V++L + F DR+ +K+ A++ ++QGRL+SFF
Sbjct: 296 LDIKWTSPDEEGIVQFLVNENGFNIDRVTKAIEKIKTAKNKSSQGRLESFF 346
>gi|425778472|gb|EKV16597.1| Flap endonuclease 1 [Penicillium digitatum PHI26]
gi|425784232|gb|EKV22023.1| Flap endonuclease 1 [Penicillium digitatum Pd1]
Length = 395
Score = 174 bits (441), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 82/138 (59%), Positives = 104/138 (75%), Gaps = 3/138 (2%)
Query: 60 KAPCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVL 119
AP EAEAQCA + +AGKVYA A+EDMD L F S ILLRH+TFSE RK P+QE HL++ L
Sbjct: 154 NAPTEAEAQCAVLARAGKVYAAASEDMDTLCFESPILLRHLTFSEQRKEPIQEIHLDRAL 213
Query: 120 EGMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILE---NIDTKKYTV 176
EG+++ +FIDLCILLGCDY + I +G A+ LIKEH+S+EK+LE N KK+ V
Sbjct: 214 EGLDMDRPQFIDLCILLGCDYLEPIPKVGATTALSLIKEHKSLEKVLEFMKNDPKKKFVV 273
Query: 177 PEGWLYKEARELFRHPEV 194
PE W Y++ARELF +P+V
Sbjct: 274 PEDWPYEDARELFSNPDV 291
Score = 122 bits (307), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 57/96 (59%), Positives = 74/96 (77%), Gaps = 7/96 (7%)
Query: 304 ELVADVAPSSIRES-------RKICIDASMSLYQFLIAVRSEGNQLMSVDGEPTSHLMGT 356
+++++ AP +I+ RK+ IDASMS+Y FLIAVRSEG QLMS GE TSHLMG
Sbjct: 8 QVISENAPDAIKTGEIKNHFGRKVAIDASMSIYSFLIAVRSEGQQLMSESGETTSHLMGM 67
Query: 357 FYRTIRLVEHGLKPIYVFDGKPPTLKSGELNKRMEK 392
FYRT+R+V++G+KP+YVFDG PP LKSGEL KR+ +
Sbjct: 68 FYRTLRMVDNGIKPLYVFDGAPPKLKSGELAKRVAR 103
Score = 85.9 bits (211), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 39/69 (56%), Positives = 51/69 (73%), Gaps = 3/69 (4%)
Query: 232 FIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILE---NIDTKKYTVPEGWLYKEA 288
FIDLCILLGCDY + I +G A+ LIKEH+S+EK+LE N KK+ VPE W Y++A
Sbjct: 223 FIDLCILLGCDYLEPIPKVGATTALSLIKEHKSLEKVLEFMKNDPKKKFVVPEDWPYEDA 282
Query: 289 RELFRHPEI 297
RELF +P++
Sbjct: 283 RELFSNPDV 291
Score = 62.4 bits (150), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 29/63 (46%), Positives = 39/63 (61%), Gaps = 1/63 (1%)
Query: 409 LKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSTTTQGRLDSFF-TIRREEKRKS 467
KW P+ +GL++YL GDK F EDR+RNGA +L K T Q RL+ FF + R E K+
Sbjct: 301 FKWEAPNVEGLIEYLVGDKGFNEDRVRNGAARLSKHLKTAQQSRLEGFFKPVARTEDEKA 360
Query: 468 RCQ 470
+
Sbjct: 361 SLK 363
Score = 62.4 bits (150), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 29/60 (48%), Positives = 38/60 (63%), Gaps = 1/60 (1%)
Query: 3 LKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSSTTQGRLDSFF-TIRREEKRKA 61
KW P+ +GL++YL GDK F EDR+RNGA +L K + Q RL+ FF + R E KA
Sbjct: 301 FKWEAPNVEGLIEYLVGDKGFNEDRVRNGAARLSKHLKTAQQSRLEGFFKPVARTEDEKA 360
>gi|448526873|ref|XP_003869406.1| hypothetical protein CORT_0D04310 [Candida orthopsilosis Co 90-125]
gi|380353759|emb|CCG23271.1| hypothetical protein CORT_0D04310 [Candida orthopsilosis]
Length = 382
Score = 174 bits (441), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 79/146 (54%), Positives = 106/146 (72%), Gaps = 4/146 (2%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVLE 120
APCEAEAQCA + + GKV+A A+EDMD L + LLRH+TF+EARK+P+ + + +E
Sbjct: 156 APCEAEAQCAELARGGKVFAAASEDMDTLCYEPPYLLRHLTFAEARKMPIDQITYSEAME 215
Query: 121 GMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILE----NIDTKKYTV 176
G+ + E+FIDLCILLGCDYC++I+G+GP A +LIKEH S++ ++E N D K+ V
Sbjct: 216 GLGMPKEQFIDLCILLGCDYCETIKGVGPVTAYKLIKEHGSLDNLVEYLQKNPDKTKFKV 275
Query: 177 PEGWLYKEARELFRHPEVADPETIEF 202
PE W YKEARELF HPEV + +E
Sbjct: 276 PENWPYKEARELFLHPEVIEATEVEL 301
Score = 122 bits (307), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 61/114 (53%), Positives = 84/114 (73%), Gaps = 8/114 (7%)
Query: 304 ELVADVAPSSIRE-------SRKICIDASMSLYQFLIAVR-SEGNQLMSVDGEPTSHLMG 355
+L+ + +P + +E RK+ IDASM LYQFLIAVR S+G QL + +GE TSHL G
Sbjct: 8 QLIKEHSPHAYKEFQLKNLFGRKVAIDASMCLYQFLIAVRQSDGQQLTNEEGETTSHLSG 67
Query: 356 TFYRTIRLVEHGLKPIYVFDGKPPTLKSGELNKRMEKREDAQKALAKAQEQGKL 409
FYRTIR+VE+ +KP+YVFDGKPP LK GEL KR+ +RE+AQK + + +++G +
Sbjct: 68 FFYRTIRMVENNIKPVYVFDGKPPVLKGGELEKRLLRREEAQKQMDQIKDEGTV 121
Score = 102 bits (255), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 50/98 (51%), Positives = 67/98 (68%), Gaps = 11/98 (11%)
Query: 213 YCDSIRGIG-PKRAIELLYSFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILE- 270
Y +++ G+G PK FIDLCILLGCDYC++I+G+GP A +LIKEH S++ ++E
Sbjct: 210 YSEAMEGLGMPKE------QFIDLCILLGCDYCETIKGVGPVTAYKLIKEHGSLDNLVEY 263
Query: 271 ---NIDTKKYTVPEGWLYKEARELFRHPEIADPETIEL 305
N D K+ VPE W YKEARELF HPE+ + +EL
Sbjct: 264 LQKNPDKTKFKVPENWPYKEARELFLHPEVIEATEVEL 301
Score = 68.9 bits (167), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 29/51 (56%), Positives = 37/51 (72%)
Query: 3 LKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSSTTQGRLDSFFTI 53
LKW +PD DGL++Y+ K F+EDRIR+GA+KL K QGRLD FFT+
Sbjct: 301 LKWKEPDVDGLIEYMVKQKGFSEDRIRSGAEKLKKGLKGGVQGRLDGFFTV 351
Score = 68.6 bits (166), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 29/51 (56%), Positives = 37/51 (72%)
Query: 409 LKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSTTTQGRLDSFFTI 459
LKW +PD DGL++Y+ K F+EDRIR+GA+KL K QGRLD FFT+
Sbjct: 301 LKWKEPDVDGLIEYMVKQKGFSEDRIRSGAEKLKKGLKGGVQGRLDGFFTV 351
>gi|367047833|ref|XP_003654296.1| hypothetical protein THITE_2117171 [Thielavia terrestris NRRL 8126]
gi|347001559|gb|AEO67960.1| hypothetical protein THITE_2117171 [Thielavia terrestris NRRL 8126]
Length = 359
Score = 174 bits (441), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 79/141 (56%), Positives = 106/141 (75%), Gaps = 3/141 (2%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVLE 120
AP EAEAQCA + +AGKVYA A+EDMD L F + ILLRH+TFSE RK P+QE HL KVLE
Sbjct: 119 APTEAEAQCAVLARAGKVYAAASEDMDTLCFDTPILLRHLTFSEQRKEPIQEIHLAKVLE 178
Query: 121 GMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILE---NIDTKKYTVP 177
G+ + ++F+DLCILLGCDY D I +GP A++LI+EH ++EK++E N +YT+P
Sbjct: 179 GLNMDRKQFVDLCILLGCDYLDPIPKVGPSTALKLIREHGTLEKVVEFMRNDPKGRYTIP 238
Query: 178 EGWLYKEARELFRHPEVADPE 198
+ W +++ARELF P+V P+
Sbjct: 239 DDWPFQDARELFFSPDVRQPD 259
Score = 114 bits (285), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 49/82 (59%), Positives = 68/82 (82%)
Query: 326 MSLYQFLIAVRSEGNQLMSVDGEPTSHLMGTFYRTIRLVEHGLKPIYVFDGKPPTLKSGE 385
MS+Y FLIAVRS+G QLM+ G+ TSHLMG FYRT+R+V++G+KP+YVFDG PP LKSGE
Sbjct: 1 MSIYSFLIAVRSDGQQLMNESGDTTSHLMGMFYRTLRMVDNGIKPLYVFDGAPPKLKSGE 60
Query: 386 LNKRMEKREDAQKALAKAQEQG 407
L +R +++++A + L +A+E G
Sbjct: 61 LARRFQRKQEANEGLEEAKETG 82
Score = 84.0 bits (206), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 35/73 (47%), Positives = 53/73 (72%), Gaps = 3/73 (4%)
Query: 232 FIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILE---NIDTKKYTVPEGWLYKEA 288
F+DLCILLGCDY D I +GP A++LI+EH ++EK++E N +YT+P+ W +++A
Sbjct: 187 FVDLCILLGCDYLDPIPKVGPSTALKLIREHGTLEKVVEFMRNDPKGRYTIPDDWPFQDA 246
Query: 289 RELFRHPEIADPE 301
RELF P++ P+
Sbjct: 247 RELFFSPDVRQPD 259
Score = 54.3 bits (129), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/51 (43%), Positives = 33/51 (64%)
Query: 3 LKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSSTTQGRLDSFFTI 53
KW PD +GLV++L +K F+EDR+R G +L K S+ Q R++ FF +
Sbjct: 265 FKWDKPDIEGLVQFLVHEKGFSEDRVRAGGARLEKNLKSSQQARIEGFFKV 315
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 33/51 (64%)
Query: 409 LKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSTTTQGRLDSFFTI 459
KW PD +GLV++L +K F+EDR+R G +L K ++ Q R++ FF +
Sbjct: 265 FKWDKPDIEGLVQFLVHEKGFSEDRVRAGGARLEKNLKSSQQARIEGFFKV 315
>gi|255945091|ref|XP_002563313.1| Pc20g07900 [Penicillium chrysogenum Wisconsin 54-1255]
gi|317374920|sp|B6HEM2.1|FEN1_PENCW RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|211588048|emb|CAP86119.1| Pc20g07900 [Penicillium chrysogenum Wisconsin 54-1255]
Length = 395
Score = 174 bits (440), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 82/138 (59%), Positives = 104/138 (75%), Gaps = 3/138 (2%)
Query: 60 KAPCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVL 119
AP EAEAQCA + +AGKVYA A+EDMD L F S ILLRH+TFSE RK P+QE HL++ L
Sbjct: 154 NAPTEAEAQCAVLARAGKVYAAASEDMDTLCFESPILLRHLTFSEQRKEPIQEIHLDRAL 213
Query: 120 EGMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILE---NIDTKKYTV 176
EG+++ +FIDLCILLGCDY + I +G A+ LIKEH+S+EK+LE N KK+ V
Sbjct: 214 EGLDMDRAQFIDLCILLGCDYLEPIPKVGATTALSLIKEHKSLEKVLEFMKNDPKKKFVV 273
Query: 177 PEGWLYKEARELFRHPEV 194
PE W Y++ARELF +P+V
Sbjct: 274 PEDWPYEDARELFTNPDV 291
Score = 123 bits (308), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 57/96 (59%), Positives = 74/96 (77%), Gaps = 7/96 (7%)
Query: 304 ELVADVAPSSIRES-------RKICIDASMSLYQFLIAVRSEGNQLMSVDGEPTSHLMGT 356
+++++ AP +I+ RK+ IDASMS+Y FLIAVRSEG QLMS GE TSHLMG
Sbjct: 8 QVISENAPDAIKTGEIKNHFGRKVAIDASMSIYSFLIAVRSEGQQLMSESGETTSHLMGM 67
Query: 357 FYRTIRLVEHGLKPIYVFDGKPPTLKSGELNKRMEK 392
FYRT+R+V++G+KP+YVFDG PP LKSGEL KR+ +
Sbjct: 68 FYRTLRMVDNGIKPLYVFDGAPPKLKSGELAKRVAR 103
Score = 85.9 bits (211), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 45/90 (50%), Positives = 60/90 (66%), Gaps = 7/90 (7%)
Query: 215 DSIRGIGPKRAIELL----YSFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILE 270
+ I+ I RA+E L FIDLCILLGCDY + I +G A+ LIKEH+S+EK+LE
Sbjct: 202 EPIQEIHLDRALEGLDMDRAQFIDLCILLGCDYLEPIPKVGATTALSLIKEHKSLEKVLE 261
Query: 271 ---NIDTKKYTVPEGWLYKEARELFRHPEI 297
N KK+ VPE W Y++ARELF +P++
Sbjct: 262 FMKNDPKKKFVVPEDWPYEDARELFTNPDV 291
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/63 (44%), Positives = 39/63 (61%), Gaps = 1/63 (1%)
Query: 409 LKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSTTTQGRLDSFF-TIRREEKRKS 467
KW P+ +GL+++L GDK F EDR+RNGA +L K T Q RL+ FF + R E K+
Sbjct: 301 FKWEAPNVEGLIEFLVGDKGFNEDRVRNGAARLSKHLKTAQQSRLEGFFKPVARTEDEKA 360
Query: 468 RCQ 470
+
Sbjct: 361 SLK 363
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/60 (46%), Positives = 38/60 (63%), Gaps = 1/60 (1%)
Query: 3 LKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSSTTQGRLDSFF-TIRREEKRKA 61
KW P+ +GL+++L GDK F EDR+RNGA +L K + Q RL+ FF + R E KA
Sbjct: 301 FKWEAPNVEGLIEFLVGDKGFNEDRVRNGAARLSKHLKTAQQSRLEGFFKPVARTEDEKA 360
>gi|46138549|ref|XP_390965.1| hypothetical protein FG10789.1 [Gibberella zeae PH-1]
gi|408391605|gb|EKJ70977.1| hypothetical protein FPSE_08836 [Fusarium pseudograminearum CS3096]
Length = 395
Score = 174 bits (440), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 79/137 (57%), Positives = 104/137 (75%), Gaps = 3/137 (2%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVLE 120
AP EAEAQCA + +AGKVYA A+EDMD L F + ILLRH+TFSE RK P+QE L+KVLE
Sbjct: 155 APTEAEAQCAVLAQAGKVYAAASEDMDTLCFNTPILLRHLTFSEQRKEPIQEIRLDKVLE 214
Query: 121 GMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKI---LENIDTKKYTVP 177
G+ + ++F+DLCILLGCDY D I +GP A+++I++H S+EK+ +EN KKY +P
Sbjct: 215 GLNMERKQFVDLCILLGCDYLDPIPKVGPSTALKMIRDHGSLEKVVEAMENDSKKKYVIP 274
Query: 178 EGWLYKEARELFRHPEV 194
E W YK+AR+LF P+V
Sbjct: 275 EDWPYKDARDLFFEPDV 291
Score = 133 bits (335), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 62/112 (55%), Positives = 85/112 (75%), Gaps = 7/112 (6%)
Query: 303 IELVADVAPSSIRES-------RKICIDASMSLYQFLIAVRSEGNQLMSVDGEPTSHLMG 355
+++ + AP +I+ES RK+ IDASMS+Y FLIAVRSEG QL + GE TSHLMG
Sbjct: 7 FQIIKEEAPDAIKESEIKNQFGRKVAIDASMSIYSFLIAVRSEGQQLTNESGETTSHLMG 66
Query: 356 TFYRTIRLVEHGLKPIYVFDGKPPTLKSGELNKRMEKREDAQKALAKAQEQG 407
FYRT+R+V++G+KP+YVFDG PP LKSGEL KR +++++A + L +A+E G
Sbjct: 67 MFYRTLRMVDNGIKPLYVFDGAPPKLKSGELAKRFQRKQEATEGLEEAKETG 118
Score = 85.9 bits (211), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 36/69 (52%), Positives = 51/69 (73%), Gaps = 3/69 (4%)
Query: 232 FIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKI---LENIDTKKYTVPEGWLYKEA 288
F+DLCILLGCDY D I +GP A+++I++H S+EK+ +EN KKY +PE W YK+A
Sbjct: 223 FVDLCILLGCDYLDPIPKVGPSTALKMIRDHGSLEKVVEAMENDSKKKYVIPEDWPYKDA 282
Query: 289 RELFRHPEI 297
R+LF P++
Sbjct: 283 RDLFFEPDV 291
Score = 58.5 bits (140), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 28/60 (46%), Positives = 39/60 (65%), Gaps = 1/60 (1%)
Query: 3 LKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSSTTQGRLDSFF-TIRREEKRKA 61
KW PD +GLVK+L +K F+EDR+R+G +L K S+ Q RL+ FF I + E+ KA
Sbjct: 301 FKWEKPDMEGLVKFLVTEKGFSEDRVRSGGARLEKNLKSSQQARLEGFFKPIPKTEEEKA 360
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 23/49 (46%), Positives = 33/49 (67%)
Query: 409 LKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSTTTQGRLDSFF 457
KW PD +GLVK+L +K F+EDR+R+G +L K ++ Q RL+ FF
Sbjct: 301 FKWEKPDMEGLVKFLVTEKGFSEDRVRSGGARLEKNLKSSQQARLEGFF 349
>gi|407414008|gb|EKF35678.1| hypothetical protein MOQ_002324 [Trypanosoma cruzi marinkellei]
Length = 393
Score = 174 bits (440), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 80/143 (55%), Positives = 108/143 (75%)
Query: 60 KAPCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVL 119
+AP EAEAQCA +VK K +A ATEDMDALTFG+ ++LRH+T+SEA+K P+ EFHL+++L
Sbjct: 158 QAPSEAEAQCAELVKKNKAWAVATEDMDALTFGAPVMLRHLTYSEAKKRPIAEFHLDEIL 217
Query: 120 EGMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEG 179
L+ +FIDLCILLGCDY I GIGP++A E IK+H IE +L+++D +++VPEG
Sbjct: 218 GITGLTMTQFIDLCILLGCDYVPKIPGIGPQKAWEGIKKHGDIETLLQSLDAGRHSVPEG 277
Query: 180 WLYKEARELFRHPEVADPETIEF 202
+ Y+EAR+ F PEV E IE
Sbjct: 278 FHYEEARQFFLTPEVTPAEEIEI 300
Score = 112 bits (279), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 56/115 (48%), Positives = 82/115 (71%), Gaps = 11/115 (9%)
Query: 304 ELVADVAPSSIRE-------SRKICIDASMSLYQFLIAVRS----EGNQLMSVDGEPTSH 352
+L+ D +P++IRE R+I IDASM++YQF+IA++ +G +L + GE TSH
Sbjct: 8 KLLYDRSPAAIRERELKNYFGRRIAIDASMTIYQFIIAMKGFQDGQGMELTNEAGEVTSH 67
Query: 353 LMGTFYRTIRLVEHGLKPIYVFDGKPPTLKSGELNKRMEKREDAQKALAKAQEQG 407
L G F RT+R+V+ GL+PIYVFDGKPPTLK+ EL +R ++ E+AQ+ A+E+G
Sbjct: 68 LNGLFARTLRMVDEGLRPIYVFDGKPPTLKASELQERRQRAEEAQQLFDTAKEEG 122
Score = 91.3 bits (225), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 40/77 (51%), Positives = 56/77 (72%)
Query: 229 LYSFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGWLYKEA 288
+ FIDLCILLGCDY I GIGP++A E IK+H IE +L+++D +++VPEG+ Y+EA
Sbjct: 224 MTQFIDLCILLGCDYVPKIPGIGPQKAWEGIKKHGDIETLLQSLDAGRHSVPEGFHYEEA 283
Query: 289 RELFRHPEIADPETIEL 305
R+ F PE+ E IE+
Sbjct: 284 RQFFLTPEVTPAEEIEI 300
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/65 (46%), Positives = 44/65 (67%)
Query: 3 LKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSSTTQGRLDSFFTIRREEKRKAP 62
+++ +PDE+GLVK+L +K F +DR+ G ++L A S TQGRLD FFTI R +
Sbjct: 300 IQFREPDEEGLVKFLVEEKLFNKDRVLKGIQRLRNALSRKTQGRLDQFFTITRPVTKPNN 359
Query: 63 CEAEA 67
C+A+A
Sbjct: 360 CDAKA 364
Score = 62.0 bits (149), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 29/69 (42%), Positives = 45/69 (65%)
Query: 405 EQGKLKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSTTTQGRLDSFFTIRREEK 464
E+ ++++ +PDE+GLVK+L +K F +DR+ G ++L A S TQGRLD FFTI R
Sbjct: 296 EEIEIQFREPDEEGLVKFLVEEKLFNKDRVLKGIQRLRNALSRKTQGRLDQFFTITRPVT 355
Query: 465 RKSRCQYQC 473
+ + C +
Sbjct: 356 KPNNCDAKA 364
>gi|407034393|gb|EKE37191.1| flap nuclease, putative [Entamoeba nuttalli P19]
Length = 376
Score = 174 bits (440), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 81/136 (59%), Positives = 106/136 (77%), Gaps = 1/136 (0%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVLE 120
A CEAE CAA+VKAGK YATATEDMDALT GS ++R + S+ +K P++E+ L +LE
Sbjct: 156 ANCEAEGSCAALVKAGKCYATATEDMDALTLGSEHVVRKFSASDNKKDPIREYSLSSILE 215
Query: 121 GMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGW 180
+ E+FIDLCILLGCDYC++I+G+GP A ELI++++SIE IL+++ + KY VPE W
Sbjct: 216 ETGFTMEQFIDLCILLGCDYCETIKGVGPITAFELIQQYKSIENILQHL-SDKYKVPENW 274
Query: 181 LYKEARELFRHPEVAD 196
YKEARELF HP+VAD
Sbjct: 275 KYKEARELFLHPDVAD 290
Score = 116 bits (291), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 59/112 (52%), Positives = 79/112 (70%), Gaps = 8/112 (7%)
Query: 304 ELVADVAPSSIRES-------RKICIDASMSLYQFLIAVR-SEGNQLMSVDGEPTSHLMG 355
+L+A AP S++E R I IDAS+ +YQF+ AVR + G ++ GE TSH++G
Sbjct: 8 KLLARYAPKSMKEGKIDQYSGRVIAIDASILVYQFISAVRDTTGATMVDEFGETTSHIIG 67
Query: 356 TFYRTIRLVEHGLKPIYVFDGKPPTLKSGELNKRMEKREDAQKALAKAQEQG 407
TFYRTI+L+E G+KP+YVFDGKPP +K GELNKR E + AQ+ L KA E+G
Sbjct: 68 TFYRTIKLIESGIKPVYVFDGKPPEMKDGELNKRKENAQKAQEQLDKALEEG 119
Score = 102 bits (254), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 44/68 (64%), Positives = 58/68 (85%), Gaps = 1/68 (1%)
Query: 232 FIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGWLYKEAREL 291
FIDLCILLGCDYC++I+G+GP A ELI++++SIE IL+++ + KY VPE W YKEAREL
Sbjct: 224 FIDLCILLGCDYCETIKGVGPITAFELIQQYKSIENILQHL-SDKYKVPENWKYKEAREL 282
Query: 292 FRHPEIAD 299
F HP++AD
Sbjct: 283 FLHPDVAD 290
Score = 60.1 bits (144), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 25/54 (46%), Positives = 38/54 (70%)
Query: 408 KLKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSTTTQGRLDSFFTIRR 461
KL+W+ DE+G+ KYL +K+F E+R+ G +KL +S QGRLDSFF +++
Sbjct: 295 KLEWNKIDEEGIKKYLVTEKHFNEERVTKGIEKLKNVKSKKAQGRLDSFFNVKK 348
Score = 58.9 bits (141), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 31/82 (37%), Positives = 49/82 (59%), Gaps = 6/82 (7%)
Query: 3 LKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSSTTQGRLDSFFTIRREEKRKAP 62
L+W+ DE+G+ KYL +K+F E+R+ G +KL +S QGRLDSFF + +K P
Sbjct: 296 LEWNKIDEEGIKKYLVTEKHFNEERVTKGIEKLKNVKSKKAQGRLDSFFNV-----KKVP 350
Query: 63 CEAEAQCAAMVKAGKVYATATE 84
++++ A+ +K K A E
Sbjct: 351 L-SKSEAASGIKRKKPTTKAKE 371
>gi|358369087|dbj|GAA85702.1| DNA-repair protein Rad2 [Aspergillus kawachii IFO 4308]
Length = 395
Score = 174 bits (440), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 81/139 (58%), Positives = 105/139 (75%), Gaps = 3/139 (2%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVLE 120
AP EAEAQCA + +AGKVYA A+EDMD L F + ILLRH+TFSE RK P+QE HL + LE
Sbjct: 155 APTEAEAQCAVLARAGKVYAAASEDMDTLCFETPILLRHLTFSEQRKEPIQEIHLNRALE 214
Query: 121 GMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKIL---ENIDTKKYTVP 177
G+ + ++FIDLCILLGCDY + I +GP A++LI++H S+EK+L EN KK+ VP
Sbjct: 215 GLGMDRKQFIDLCILLGCDYLEPIPKVGPNTALKLIRDHGSLEKVLEFMENDPKKKFVVP 274
Query: 178 EGWLYKEARELFRHPEVAD 196
E W Y++ARELF +P+V D
Sbjct: 275 EDWPYEDARELFLNPDVRD 293
Score = 130 bits (328), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 62/111 (55%), Positives = 83/111 (74%), Gaps = 7/111 (6%)
Query: 304 ELVADVAPSSIRES-------RKICIDASMSLYQFLIAVRSEGNQLMSVDGEPTSHLMGT 356
+++++ AP +I+ RK+ IDASMS+Y FLIAVRSEG QLMS GE TSHLMG
Sbjct: 8 QVISENAPDAIKAGDIKNHFGRKVAIDASMSIYSFLIAVRSEGQQLMSDTGETTSHLMGM 67
Query: 357 FYRTIRLVEHGLKPIYVFDGKPPTLKSGELNKRMEKREDAQKALAKAQEQG 407
FYRT+R+V++G+KP+YVFDG PP LKSGEL KR ++ +A +A +A+E G
Sbjct: 68 FYRTLRMVDNGIKPLYVFDGAPPKLKSGELAKRFARKSEATEAHEEAKETG 118
Score = 87.8 bits (216), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 45/92 (48%), Positives = 62/92 (67%), Gaps = 7/92 (7%)
Query: 215 DSIRGIGPKRAIELL----YSFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKIL- 269
+ I+ I RA+E L FIDLCILLGCDY + I +GP A++LI++H S+EK+L
Sbjct: 202 EPIQEIHLNRALEGLGMDRKQFIDLCILLGCDYLEPIPKVGPNTALKLIRDHGSLEKVLE 261
Query: 270 --ENIDTKKYTVPEGWLYKEARELFRHPEIAD 299
EN KK+ VPE W Y++ARELF +P++ D
Sbjct: 262 FMENDPKKKFVVPEDWPYEDARELFLNPDVRD 293
Score = 57.8 bits (138), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/60 (46%), Positives = 37/60 (61%), Gaps = 1/60 (1%)
Query: 3 LKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSSTTQGRLDSFF-TIRREEKRKA 61
KW PD GLV++L DK F EDR++NGA +L K S Q RL+ FF + R ++ KA
Sbjct: 301 FKWEAPDVPGLVEFLVKDKGFNEDRVKNGAARLQKNLKSAQQSRLEGFFKPVARTDEEKA 360
Score = 56.2 bits (134), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 27/61 (44%), Positives = 37/61 (60%), Gaps = 2/61 (3%)
Query: 409 LKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSTTTQGRLDSFF--TIRREEKRK 466
KW PD GLV++L DK F EDR++NGA +L K + Q RL+ FF R +E++
Sbjct: 301 FKWEAPDVPGLVEFLVKDKGFNEDRVKNGAARLQKNLKSAQQSRLEGFFKPVARTDEEKA 360
Query: 467 S 467
S
Sbjct: 361 S 361
>gi|145245469|ref|XP_001395002.1| DNA repair protein rad2 [Aspergillus niger CBS 513.88]
gi|317374885|sp|A5ABU3.1|FEN1_ASPNC RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|134079702|emb|CAK97128.1| unnamed protein product [Aspergillus niger]
Length = 395
Score = 174 bits (440), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 81/139 (58%), Positives = 105/139 (75%), Gaps = 3/139 (2%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVLE 120
AP EAEAQCA + +AGKVYA A+EDMD L F + ILLRH+TFSE RK P+QE HL + LE
Sbjct: 155 APTEAEAQCAVLARAGKVYAAASEDMDTLCFETPILLRHLTFSEQRKEPIQEIHLNRALE 214
Query: 121 GMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKIL---ENIDTKKYTVP 177
G+ + ++FIDLCILLGCDY + I +GP A++LI++H S+EK+L EN KK+ VP
Sbjct: 215 GLGMDRKQFIDLCILLGCDYLEPIPKVGPNTALKLIRDHGSLEKVLEFMENDPKKKFVVP 274
Query: 178 EGWLYKEARELFRHPEVAD 196
E W Y++ARELF +P+V D
Sbjct: 275 EDWPYEDARELFLNPDVRD 293
Score = 130 bits (328), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 62/111 (55%), Positives = 83/111 (74%), Gaps = 7/111 (6%)
Query: 304 ELVADVAPSSIRES-------RKICIDASMSLYQFLIAVRSEGNQLMSVDGEPTSHLMGT 356
+++++ AP +I+ RK+ IDASMS+Y FLIAVRSEG QLMS GE TSHLMG
Sbjct: 8 QVISENAPDAIKAGDIKNHFGRKVAIDASMSIYSFLIAVRSEGQQLMSDTGETTSHLMGM 67
Query: 357 FYRTIRLVEHGLKPIYVFDGKPPTLKSGELNKRMEKREDAQKALAKAQEQG 407
FYRT+R+V++G+KP+YVFDG PP LKSGEL KR ++ +A +A +A+E G
Sbjct: 68 FYRTLRMVDNGIKPLYVFDGAPPKLKSGELAKRFARKSEATEAHEEAKETG 118
Score = 87.8 bits (216), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 45/92 (48%), Positives = 62/92 (67%), Gaps = 7/92 (7%)
Query: 215 DSIRGIGPKRAIELL----YSFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKIL- 269
+ I+ I RA+E L FIDLCILLGCDY + I +GP A++LI++H S+EK+L
Sbjct: 202 EPIQEIHLNRALEGLGMDRKQFIDLCILLGCDYLEPIPKVGPNTALKLIRDHGSLEKVLE 261
Query: 270 --ENIDTKKYTVPEGWLYKEARELFRHPEIAD 299
EN KK+ VPE W Y++ARELF +P++ D
Sbjct: 262 FMENDPKKKFVVPEDWPYEDARELFLNPDVRD 293
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/60 (46%), Positives = 36/60 (60%), Gaps = 1/60 (1%)
Query: 3 LKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSSTTQGRLDSFF-TIRREEKRKA 61
KW PD GLV +L DK F EDR++NGA +L K S Q RL+ FF + R ++ KA
Sbjct: 301 FKWEAPDVPGLVDFLVKDKGFNEDRVKNGAARLQKNLKSAQQSRLEGFFKPVARTDEEKA 360
Score = 55.8 bits (133), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 27/61 (44%), Positives = 36/61 (59%), Gaps = 2/61 (3%)
Query: 409 LKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSTTTQGRLDSFF--TIRREEKRK 466
KW PD GLV +L DK F EDR++NGA +L K + Q RL+ FF R +E++
Sbjct: 301 FKWEAPDVPGLVDFLVKDKGFNEDRVKNGAARLQKNLKSAQQSRLEGFFKPVARTDEEKA 360
Query: 467 S 467
S
Sbjct: 361 S 361
>gi|3047083|gb|AAC13596.1| similar to FLAP endonuclease-1 (SW:P39748) [Arabidopsis thaliana]
Length = 362
Score = 173 bits (439), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 79/139 (56%), Positives = 108/139 (77%)
Query: 60 KAPCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVL 119
+A EAEAQCAA+ K+GKVY A+EDMD+LTFG+ LRH+ +RK+PV EF + K+L
Sbjct: 188 EATSEAEAQCAALCKSGKVYGVASEDMDSLTFGAPKFLRHLMDPSSRKIPVMEFEVAKIL 247
Query: 120 EGMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEG 179
E ++L+ ++FIDLCIL GCDYCDSIRGIG + A++LI++H SIE ILEN++ ++Y +PE
Sbjct: 248 EELQLTMDQFIDLCILSGCDYCDSIRGIGGQTALKLIRQHGSIETILENLNKERYQIPEE 307
Query: 180 WLYKEARELFRHPEVADPE 198
W Y EAR+LF+ P+V E
Sbjct: 308 WPYNEARKLFKEPDVITDE 326
Score = 97.8 bits (242), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 44/75 (58%), Positives = 60/75 (80%), Gaps = 1/75 (1%)
Query: 232 FIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGWLYKEAREL 291
FIDLCIL GCDYCDSIRGIG + A++LI++H SIE ILEN++ ++Y +PE W Y EAR+L
Sbjct: 257 FIDLCILSGCDYCDSIRGIGGQTALKLIRQHGSIETILENLNKERYQIPEEWPYNEARKL 316
Query: 292 FRHPE-IADPETIEL 305
F+ P+ I D E +++
Sbjct: 317 FKEPDVITDEEQLDI 331
Score = 84.3 bits (207), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 58/146 (39%), Positives = 69/146 (47%), Gaps = 41/146 (28%)
Query: 304 ELVADVAPSSIRE-------SRKICIDASMSLYQFLIAVRSEGNQLMSVDGEPTS----- 351
+L+AD APS ++E RKI +DASMS+YQFL+ S L+ G S
Sbjct: 8 KLLADNAPSCMKEQKFESYFGRKIAVDASMSIYQFLVRAPSSPLLLLEELGLKCSLMKLV 67
Query: 352 -----------------------------HLMGTFYRTIRLVEHGLKPIYVFDGKPPTLK 382
HL G F RTIRL+E G+KP+YVFDGKPP LK
Sbjct: 68 KSLVWIFLCDVLCLYVFFVYVVIYMMFNRHLQGMFNRTIRLLEAGIKPVYVFDGKPPELK 127
Query: 383 SGELNKRMEKREDAQKALAKAQEQGK 408
EL KR KR DA L A E G
Sbjct: 128 RQELAKRYSKRADATADLTGAIEAGN 153
>gi|350631707|gb|EHA20078.1| hypothetical protein ASPNIDRAFT_48158 [Aspergillus niger ATCC 1015]
Length = 359
Score = 173 bits (439), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 81/139 (58%), Positives = 105/139 (75%), Gaps = 3/139 (2%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVLE 120
AP EAEAQCA + +AGKVYA A+EDMD L F + ILLRH+TFSE RK P+QE HL + LE
Sbjct: 119 APTEAEAQCAVLARAGKVYAAASEDMDTLCFETPILLRHLTFSEQRKEPIQEIHLNRALE 178
Query: 121 GMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKIL---ENIDTKKYTVP 177
G+ + ++FIDLCILLGCDY + I +GP A++LI++H S+EK+L EN KK+ VP
Sbjct: 179 GLGMDRKQFIDLCILLGCDYLEPIPKVGPNTALKLIRDHGSLEKVLEFMENDPKKKFVVP 238
Query: 178 EGWLYKEARELFRHPEVAD 196
E W Y++ARELF +P+V D
Sbjct: 239 EDWPYEDARELFLNPDVRD 257
Score = 115 bits (288), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 53/82 (64%), Positives = 66/82 (80%)
Query: 326 MSLYQFLIAVRSEGNQLMSVDGEPTSHLMGTFYRTIRLVEHGLKPIYVFDGKPPTLKSGE 385
MS+Y FLIAVRSEG QLMS GE TSHLMG FYRT+R+V++G+KP+YVFDG PP LKSGE
Sbjct: 1 MSIYSFLIAVRSEGQQLMSDTGETTSHLMGMFYRTLRMVDNGIKPLYVFDGAPPKLKSGE 60
Query: 386 LNKRMEKREDAQKALAKAQEQG 407
L KR ++ +A +A +A+E G
Sbjct: 61 LAKRFARKSEATEAHEEAKETG 82
Score = 87.8 bits (216), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 45/92 (48%), Positives = 62/92 (67%), Gaps = 7/92 (7%)
Query: 215 DSIRGIGPKRAIELL----YSFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKIL- 269
+ I+ I RA+E L FIDLCILLGCDY + I +GP A++LI++H S+EK+L
Sbjct: 166 EPIQEIHLNRALEGLGMDRKQFIDLCILLGCDYLEPIPKVGPNTALKLIRDHGSLEKVLE 225
Query: 270 --ENIDTKKYTVPEGWLYKEARELFRHPEIAD 299
EN KK+ VPE W Y++ARELF +P++ D
Sbjct: 226 FMENDPKKKFVVPEDWPYEDARELFLNPDVRD 257
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/60 (46%), Positives = 36/60 (60%), Gaps = 1/60 (1%)
Query: 3 LKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSSTTQGRLDSFF-TIRREEKRKA 61
KW PD GLV +L DK F EDR++NGA +L K S Q RL+ FF + R ++ KA
Sbjct: 265 FKWEAPDVPGLVDFLVKDKGFNEDRVKNGAARLQKNLKSAQQSRLEGFFKPVARTDEEKA 324
Score = 55.5 bits (132), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 27/61 (44%), Positives = 36/61 (59%), Gaps = 2/61 (3%)
Query: 409 LKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSTTTQGRLDSFF--TIRREEKRK 466
KW PD GLV +L DK F EDR++NGA +L K + Q RL+ FF R +E++
Sbjct: 265 FKWEAPDVPGLVDFLVKDKGFNEDRVKNGAARLQKNLKSAQQSRLEGFFKPVARTDEEKA 324
Query: 467 S 467
S
Sbjct: 325 S 325
>gi|71652611|ref|XP_814958.1| flap endonuclease-1 (FEN-1) [Trypanosoma cruzi strain CL Brener]
gi|122023721|sp|Q4DKQ5.1|FEN1_TRYCC RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|70879977|gb|EAN93107.1| flap endonuclease-1 (FEN-1), putative [Trypanosoma cruzi]
Length = 393
Score = 173 bits (439), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 80/143 (55%), Positives = 108/143 (75%)
Query: 60 KAPCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVL 119
+AP EAEAQCA +VK K +A ATEDMDALTFG+ ++LRH+T+SEA+K P+ EFHL+++L
Sbjct: 158 QAPSEAEAQCAELVKKKKAWAVATEDMDALTFGAPVMLRHLTYSEAKKRPIAEFHLDEIL 217
Query: 120 EGMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEG 179
L+ +FIDLCILLGCDY I GIGP++A E IK+H IE +L+++D +++VPEG
Sbjct: 218 GITGLTMTQFIDLCILLGCDYVPKIPGIGPQKAWEGIKKHGDIETLLQSLDAGRHSVPEG 277
Query: 180 WLYKEARELFRHPEVADPETIEF 202
+ Y+EAR+ F PEV E IE
Sbjct: 278 FHYEEARQFFLKPEVTPAEEIEI 300
Score = 112 bits (279), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 56/115 (48%), Positives = 82/115 (71%), Gaps = 11/115 (9%)
Query: 304 ELVADVAPSSIRE-------SRKICIDASMSLYQFLIAVRS----EGNQLMSVDGEPTSH 352
+L+ D +P++IRE R+I IDASM++YQF+IA++ +G +L + GE TSH
Sbjct: 8 KLLYDRSPAAIRERELKNYFGRRIAIDASMTIYQFIIAMKGFQDGQGMELTNEAGEVTSH 67
Query: 353 LMGTFYRTIRLVEHGLKPIYVFDGKPPTLKSGELNKRMEKREDAQKALAKAQEQG 407
L G F RT+R+V+ GL+PIYVFDGKPPTLK+ EL +R ++ E+AQ+ A+E+G
Sbjct: 68 LNGLFARTLRMVDEGLRPIYVFDGKPPTLKASELQERRQRAEEAQQLFDTAKEEG 122
Score = 91.3 bits (225), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 40/77 (51%), Positives = 56/77 (72%)
Query: 229 LYSFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGWLYKEA 288
+ FIDLCILLGCDY I GIGP++A E IK+H IE +L+++D +++VPEG+ Y+EA
Sbjct: 224 MTQFIDLCILLGCDYVPKIPGIGPQKAWEGIKKHGDIETLLQSLDAGRHSVPEGFHYEEA 283
Query: 289 RELFRHPEIADPETIEL 305
R+ F PE+ E IE+
Sbjct: 284 RQFFLKPEVTPAEEIEI 300
Score = 62.8 bits (151), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 29/65 (44%), Positives = 44/65 (67%)
Query: 3 LKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSSTTQGRLDSFFTIRREEKRKAP 62
+++ +PDE+GLVK+L +K F +DR+ G ++L A + TQGRLD FFTI R +
Sbjct: 300 IQFREPDEEGLVKFLVEEKLFNKDRVLKGIQRLRNALTRKTQGRLDQFFTITRPVTKPNT 359
Query: 63 CEAEA 67
C+A+A
Sbjct: 360 CDAKA 364
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/69 (40%), Positives = 45/69 (65%)
Query: 405 EQGKLKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSTTTQGRLDSFFTIRREEK 464
E+ ++++ +PDE+GLVK+L +K F +DR+ G ++L A + TQGRLD FFTI R
Sbjct: 296 EEIEIQFREPDEEGLVKFLVEEKLFNKDRVLKGIQRLRNALTRKTQGRLDQFFTITRPVT 355
Query: 465 RKSRCQYQC 473
+ + C +
Sbjct: 356 KPNTCDAKA 364
>gi|346322835|gb|EGX92433.1| DNA-repair protein rad2 [Cordyceps militaris CM01]
Length = 394
Score = 173 bits (439), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 80/137 (58%), Positives = 105/137 (76%), Gaps = 3/137 (2%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVLE 120
AP EAEAQCA + KAGKV+A A+EDMD L F S ILLRH+TFSE RK P+QE HL+KVLE
Sbjct: 155 APTEAEAQCAVLAKAGKVFAAASEDMDTLCFDSPILLRHLTFSEQRKEPIQEIHLDKVLE 214
Query: 121 GMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILE---NIDTKKYTVP 177
G+ + ++F+DLCILLGCDY D I +GP A++LI+E+ ++EK++E N KKY +P
Sbjct: 215 GLNMERKQFVDLCILLGCDYLDPIPKVGPTTALKLIREYGTLEKVVEAMQNDSKKKYIIP 274
Query: 178 EGWLYKEARELFRHPEV 194
E W Y++AR+LF P+V
Sbjct: 275 EDWPYEDARDLFFSPDV 291
Score = 127 bits (320), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 60/110 (54%), Positives = 82/110 (74%), Gaps = 7/110 (6%)
Query: 305 LVADVAPSSIRES-------RKICIDASMSLYQFLIAVRSEGNQLMSVDGEPTSHLMGTF 357
++ + AP +I+E RK+ IDASMS+Y FLIAVRS+G QL + GE TSHLMG F
Sbjct: 9 IIKEEAPEAIKEGEIKQHFGRKVAIDASMSIYSFLIAVRSDGQQLTNDTGETTSHLMGMF 68
Query: 358 YRTIRLVEHGLKPIYVFDGKPPTLKSGELNKRMEKREDAQKALAKAQEQG 407
YRT+R+V++G+KP+YVFDG PP LKSGEL KR ++++ A + L +A+E G
Sbjct: 69 YRTLRMVDNGIKPLYVFDGAPPKLKSGELAKRFQRKQTALEGLEEAKETG 118
Score = 81.6 bits (200), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 35/69 (50%), Positives = 51/69 (73%), Gaps = 3/69 (4%)
Query: 232 FIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILE---NIDTKKYTVPEGWLYKEA 288
F+DLCILLGCDY D I +GP A++LI+E+ ++EK++E N KKY +PE W Y++A
Sbjct: 223 FVDLCILLGCDYLDPIPKVGPTTALKLIREYGTLEKVVEAMQNDSKKKYIIPEDWPYEDA 282
Query: 289 RELFRHPEI 297
R+LF P++
Sbjct: 283 RDLFFSPDV 291
Score = 63.5 bits (153), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 26/51 (50%), Positives = 36/51 (70%)
Query: 3 LKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSSTTQGRLDSFFTI 53
+KW PD DGLVK+L G+K F+EDR+R+G +L K S+ Q RL+ FF +
Sbjct: 301 VKWDKPDMDGLVKFLVGEKGFSEDRVRSGGARLEKNLKSSQQARLEGFFKV 351
Score = 62.4 bits (150), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 25/51 (49%), Positives = 36/51 (70%)
Query: 409 LKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSTTTQGRLDSFFTI 459
+KW PD DGLVK+L G+K F+EDR+R+G +L K ++ Q RL+ FF +
Sbjct: 301 VKWDKPDMDGLVKFLVGEKGFSEDRVRSGGARLEKNLKSSQQARLEGFFKV 351
>gi|317376215|sp|A5DCF5.3|FEN1_PICGU RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
Length = 374
Score = 173 bits (438), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 79/146 (54%), Positives = 107/146 (73%), Gaps = 4/146 (2%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVLE 120
APCEAEAQCA + AGKV+A A+EDMD L + LLRH+TF+EARK+P+ + +K +E
Sbjct: 156 APCEAEAQCAELAVAGKVFAAASEDMDTLCYSPPYLLRHLTFAEARKMPIDQIDYKKAME 215
Query: 121 GMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKIL----ENIDTKKYTV 176
G+E+ + FIDLCILLGCDYC++I+G+GP A +LIKEH S++ I+ EN D+ K+ V
Sbjct: 216 GLEMDKQTFIDLCILLGCDYCETIKGVGPVTAFKLIKEHGSLDNIVKWIEENPDSTKFKV 275
Query: 177 PEGWLYKEARELFRHPEVADPETIEF 202
PE W Y EARELF +P+V+ + I
Sbjct: 276 PENWPYAEARELFLNPDVSPGKEINL 301
Score = 123 bits (309), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 63/103 (61%), Positives = 77/103 (74%), Gaps = 8/103 (7%)
Query: 304 ELVADVAPSSIRE-------SRKICIDASMSLYQFLIAVR-SEGNQLMSVDGEPTSHLMG 355
+L+ + AP + RE RK+ IDASM LYQ+LIAVR S+G QL S DGE TSHL G
Sbjct: 8 QLIKEHAPEAFREFQLKNLFGRKVAIDASMCLYQYLIAVRQSDGQQLTSEDGETTSHLSG 67
Query: 356 TFYRTIRLVEHGLKPIYVFDGKPPTLKSGELNKRMEKREDAQK 398
FYRTIRLVE+G+KP+YVFDGKPP LK GEL KRM ++++A K
Sbjct: 68 MFYRTIRLVENGIKPMYVFDGKPPVLKGGELEKRMIRKKEALK 110
Score = 96.7 bits (239), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 47/91 (51%), Positives = 65/91 (71%), Gaps = 8/91 (8%)
Query: 223 KRAIELL----YSFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKIL----ENIDT 274
K+A+E L +FIDLCILLGCDYC++I+G+GP A +LIKEH S++ I+ EN D+
Sbjct: 211 KKAMEGLEMDKQTFIDLCILLGCDYCETIKGVGPVTAFKLIKEHGSLDNIVKWIEENPDS 270
Query: 275 KKYTVPEGWLYKEARELFRHPEIADPETIEL 305
K+ VPE W Y EARELF +P+++ + I L
Sbjct: 271 TKFKVPENWPYAEARELFLNPDVSPGKEINL 301
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 29/60 (48%), Positives = 41/60 (68%)
Query: 1 MTLKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSSTTQGRLDSFFTIRREEKRK 60
+ LKW +P D LV+++ K F+EDR+R+GA+KL K QGRLD FF++ + EKRK
Sbjct: 299 INLKWQEPKVDELVEFMVKQKGFSEDRVRSGAEKLKKGLKGGVQGRLDGFFSVVKTEKRK 358
Score = 65.9 bits (159), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 29/58 (50%), Positives = 40/58 (68%)
Query: 409 LKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSTTTQGRLDSFFTIRREEKRK 466
LKW +P D LV+++ K F+EDR+R+GA+KL K QGRLD FF++ + EKRK
Sbjct: 301 LKWQEPKVDELVEFMVKQKGFSEDRVRSGAEKLKKGLKGGVQGRLDGFFSVVKTEKRK 358
>gi|190345050|gb|EDK36862.2| hypothetical protein PGUG_00960 [Meyerozyma guilliermondii ATCC
6260]
Length = 338
Score = 173 bits (438), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 79/146 (54%), Positives = 107/146 (73%), Gaps = 4/146 (2%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVLE 120
APCEAEAQCA + AGKV+A A+EDMD L + LLRH+TF+EARK+P+ + +K +E
Sbjct: 120 APCEAEAQCAELAVAGKVFAAASEDMDTLCYSPPYLLRHLTFAEARKMPIDQIDYKKAME 179
Query: 121 GMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKIL----ENIDTKKYTV 176
G+E+ + FIDLCILLGCDYC++I+G+GP A +LIKEH S++ I+ EN D+ K+ V
Sbjct: 180 GLEMDKQTFIDLCILLGCDYCETIKGVGPVTAFKLIKEHGSLDNIVKWIEENPDSTKFKV 239
Query: 177 PEGWLYKEARELFRHPEVADPETIEF 202
PE W Y EARELF +P+V+ + I
Sbjct: 240 PENWPYAEARELFLNPDVSPGKEINL 265
Score = 106 bits (265), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 52/74 (70%), Positives = 61/74 (82%), Gaps = 1/74 (1%)
Query: 326 MSLYQFLIAVR-SEGNQLMSVDGEPTSHLMGTFYRTIRLVEHGLKPIYVFDGKPPTLKSG 384
M LYQ+LIAVR S+G QL S DGE TSHL G FYRTIRLVE+G+KP+YVFDGKPP LK G
Sbjct: 1 MCLYQYLIAVRQSDGQQLTSEDGETTSHLSGMFYRTIRLVENGIKPMYVFDGKPPVLKGG 60
Query: 385 ELNKRMEKREDAQK 398
EL KRM ++++A K
Sbjct: 61 ELEKRMIRKKEALK 74
Score = 96.7 bits (239), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 47/91 (51%), Positives = 65/91 (71%), Gaps = 8/91 (8%)
Query: 223 KRAIELL----YSFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKIL----ENIDT 274
K+A+E L +FIDLCILLGCDYC++I+G+GP A +LIKEH S++ I+ EN D+
Sbjct: 175 KKAMEGLEMDKQTFIDLCILLGCDYCETIKGVGPVTAFKLIKEHGSLDNIVKWIEENPDS 234
Query: 275 KKYTVPEGWLYKEARELFRHPEIADPETIEL 305
K+ VPE W Y EARELF +P+++ + I L
Sbjct: 235 TKFKVPENWPYAEARELFLNPDVSPGKEINL 265
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 29/60 (48%), Positives = 41/60 (68%)
Query: 1 MTLKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSSTTQGRLDSFFTIRREEKRK 60
+ LKW +P D LV+++ K F+EDR+R+GA+KL K QGRLD FF++ + EKRK
Sbjct: 263 INLKWQEPKVDELVEFMVKQKGFSEDRVRSGAEKLKKGLKGGVQGRLDGFFSVVKTEKRK 322
Score = 65.5 bits (158), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 29/58 (50%), Positives = 40/58 (68%)
Query: 409 LKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSTTTQGRLDSFFTIRREEKRK 466
LKW +P D LV+++ K F+EDR+R+GA+KL K QGRLD FF++ + EKRK
Sbjct: 265 LKWQEPKVDELVEFMVKQKGFSEDRVRSGAEKLKKGLKGGVQGRLDGFFSVVKTEKRK 322
>gi|146423306|ref|XP_001487583.1| hypothetical protein PGUG_00960 [Meyerozyma guilliermondii ATCC
6260]
Length = 338
Score = 173 bits (438), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 79/146 (54%), Positives = 107/146 (73%), Gaps = 4/146 (2%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVLE 120
APCEAEAQCA + AGKV+A A+EDMD L + LLRH+TF+EARK+P+ + +K +E
Sbjct: 120 APCEAEAQCAELAVAGKVFAAASEDMDTLCYSPPYLLRHLTFAEARKMPIDQIDYKKAME 179
Query: 121 GMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKIL----ENIDTKKYTV 176
G+E+ + FIDLCILLGCDYC++I+G+GP A +LIKEH S++ I+ EN D+ K+ V
Sbjct: 180 GLEMDKQTFIDLCILLGCDYCETIKGVGPVTAFKLIKEHGSLDNIVKWIEENPDSTKFKV 239
Query: 177 PEGWLYKEARELFRHPEVADPETIEF 202
PE W Y EARELF +P+V+ + I
Sbjct: 240 PENWPYAEARELFLNPDVSPGKEINL 265
Score = 107 bits (268), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 52/74 (70%), Positives = 62/74 (83%), Gaps = 1/74 (1%)
Query: 326 MSLYQFLIAVR-SEGNQLMSVDGEPTSHLMGTFYRTIRLVEHGLKPIYVFDGKPPTLKSG 384
M LYQ+LIAVR S+G QL S DGE TSHL+G FYRTIRLVE+G+KP+YVFDGKPP LK G
Sbjct: 1 MCLYQYLIAVRQSDGQQLTSEDGETTSHLLGMFYRTIRLVENGIKPMYVFDGKPPVLKGG 60
Query: 385 ELNKRMEKREDAQK 398
EL KRM ++++A K
Sbjct: 61 ELEKRMIRKKEALK 74
Score = 96.7 bits (239), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 47/91 (51%), Positives = 65/91 (71%), Gaps = 8/91 (8%)
Query: 223 KRAIELL----YSFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKIL----ENIDT 274
K+A+E L +FIDLCILLGCDYC++I+G+GP A +LIKEH S++ I+ EN D+
Sbjct: 175 KKAMEGLEMDKQTFIDLCILLGCDYCETIKGVGPVTAFKLIKEHGSLDNIVKWIEENPDS 234
Query: 275 KKYTVPEGWLYKEARELFRHPEIADPETIEL 305
K+ VPE W Y EARELF +P+++ + I L
Sbjct: 235 TKFKVPENWPYAEARELFLNPDVSPGKEINL 265
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 29/60 (48%), Positives = 41/60 (68%)
Query: 1 MTLKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSSTTQGRLDSFFTIRREEKRK 60
+ LKW +P D LV+++ K F+EDR+R+GA+KL K QGRLD FF++ + EKRK
Sbjct: 263 INLKWQEPKVDELVEFMVKQKGFSEDRVRSGAEKLKKGLKGGVQGRLDGFFSVVKTEKRK 322
Score = 65.5 bits (158), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 29/58 (50%), Positives = 40/58 (68%)
Query: 409 LKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSTTTQGRLDSFFTIRREEKRK 466
LKW +P D LV+++ K F+EDR+R+GA+KL K QGRLD FF++ + EKRK
Sbjct: 265 LKWQEPKVDELVEFMVKQKGFSEDRVRSGAEKLKKGLKGGVQGRLDGFFSVVKTEKRK 322
>gi|310800740|gb|EFQ35633.1| XPG domain-containing protein [Glomerella graminicola M1.001]
Length = 394
Score = 173 bits (438), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 79/137 (57%), Positives = 104/137 (75%), Gaps = 3/137 (2%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVLE 120
AP EAEAQCA + +AGKVYA A+EDMD LTF + ILLRH+TFSEARK P+QE H++KVL
Sbjct: 155 APTEAEAQCAVLARAGKVYAAASEDMDTLTFDTPILLRHLTFSEARKEPIQEVHIDKVLA 214
Query: 121 GMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILE---NIDTKKYTVP 177
G+ + ++F+D CILLGCDY D I IGP A++LI+EH +E ++E N +KY VP
Sbjct: 215 GLGMERKQFVDFCILLGCDYLDPIPKIGPSTALKLIREHGDLETLVEAFKNDPKQKYVVP 274
Query: 178 EGWLYKEARELFRHPEV 194
+ W Y++ARELF +P+V
Sbjct: 275 DDWPYQDARELFLNPDV 291
Score = 130 bits (326), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 61/112 (54%), Positives = 83/112 (74%), Gaps = 7/112 (6%)
Query: 303 IELVADVAPSSIRES-------RKICIDASMSLYQFLIAVRSEGNQLMSVDGEPTSHLMG 355
+++ + AP +I+E RK+ IDASMS+Y FLIAVRSEG QL + GE TSHLMG
Sbjct: 7 FQIIKEEAPDAIKEGDIKAHFGRKVAIDASMSIYSFLIAVRSEGQQLTNESGETTSHLMG 66
Query: 356 TFYRTIRLVEHGLKPIYVFDGKPPTLKSGELNKRMEKREDAQKALAKAQEQG 407
FYRT+R+V++G+KP+YVFDG PP LKSGEL KR +++++A L +A+E G
Sbjct: 67 LFYRTLRMVDNGIKPLYVFDGAPPKLKSGELAKRFQRKQEATVGLEEAKETG 118
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 35/69 (50%), Positives = 49/69 (71%), Gaps = 3/69 (4%)
Query: 232 FIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILE---NIDTKKYTVPEGWLYKEA 288
F+D CILLGCDY D I IGP A++LI+EH +E ++E N +KY VP+ W Y++A
Sbjct: 223 FVDFCILLGCDYLDPIPKIGPSTALKLIREHGDLETLVEAFKNDPKQKYVVPDDWPYQDA 282
Query: 289 RELFRHPEI 297
RELF +P++
Sbjct: 283 RELFLNPDV 291
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/60 (48%), Positives = 38/60 (63%), Gaps = 1/60 (1%)
Query: 3 LKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSSTTQGRLDSFF-TIRREEKRKA 61
KW PD DGLV+YL +K F+EDR+R+ +L K S+ Q RLD FF I + E+ KA
Sbjct: 301 FKWEKPDMDGLVQYLVMEKGFSEDRVRSAGARLEKNLKSSQQVRLDGFFKVIPKTEEEKA 360
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/61 (44%), Positives = 39/61 (63%), Gaps = 2/61 (3%)
Query: 409 LKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSTTTQGRLDSFFTI--RREEKRK 466
KW PD DGLV+YL +K F+EDR+R+ +L K ++ Q RLD FF + + EE++
Sbjct: 301 FKWEKPDMDGLVQYLVMEKGFSEDRVRSAGARLEKNLKSSQQVRLDGFFKVIPKTEEEKA 360
Query: 467 S 467
S
Sbjct: 361 S 361
>gi|150866777|ref|XP_001386488.2| hypothetical protein PICST_33791 [Scheffersomyces stipitis CBS
6054]
gi|317376214|sp|A3M056.2|FEN1_PICST RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|149388033|gb|ABN68459.2| Exodeoxyribonuclease [Scheffersomyces stipitis CBS 6054]
Length = 381
Score = 172 bits (437), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 78/143 (54%), Positives = 106/143 (74%), Gaps = 3/143 (2%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVLE 120
APCEAEAQCA + + GKV+A A+EDMD L + LLRH+TF+EARK+P+ + + +
Sbjct: 156 APCEAEAQCAELARTGKVFAAASEDMDTLCYEPPYLLRHLTFAEARKMPINQITYSEAIA 215
Query: 121 GMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENID---TKKYTVP 177
G+E++ +FID+CILLGCDYC++I+G+GP A +LIKEH S+EKI+E+I+ T KY VP
Sbjct: 216 GLEMTKPQFIDMCILLGCDYCETIKGVGPVTAYKLIKEHGSLEKIIEHINSNPTSKYKVP 275
Query: 178 EGWLYKEARELFRHPEVADPETI 200
E W Y EAR+LF PEV E +
Sbjct: 276 ENWPYDEARQLFMDPEVTKGEEV 298
Score = 124 bits (310), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 62/114 (54%), Positives = 81/114 (71%), Gaps = 8/114 (7%)
Query: 304 ELVADVAPSSIRE-------SRKICIDASMSLYQFLIAVR-SEGNQLMSVDGEPTSHLMG 355
+L+ + +P + +E RK+ IDASM LYQFLIAVR S+G QL + GE TSHL G
Sbjct: 8 QLIKEHSPGAFKEFQLKNLFGRKVAIDASMCLYQFLIAVRQSDGQQLTNESGETTSHLSG 67
Query: 356 TFYRTIRLVEHGLKPIYVFDGKPPTLKSGELNKRMEKREDAQKALAKAQEQGKL 409
FYRTIR+VE+ +KP+YVFDGKPP LK GEL KR+ KRE+AQK + ++ G +
Sbjct: 68 MFYRTIRMVENNIKPVYVFDGKPPVLKGGELEKRLLKREEAQKQIDSIKDTGTV 121
Score = 99.8 bits (247), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 45/77 (58%), Positives = 58/77 (75%), Gaps = 3/77 (3%)
Query: 232 FIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENID---TKKYTVPEGWLYKEA 288
FID+CILLGCDYC++I+G+GP A +LIKEH S+EKI+E+I+ T KY VPE W Y EA
Sbjct: 224 FIDMCILLGCDYCETIKGVGPVTAYKLIKEHGSLEKIIEHINSNPTSKYKVPENWPYDEA 283
Query: 289 RELFRHPEIADPETIEL 305
R+LF PE+ E + L
Sbjct: 284 RQLFMDPEVTKGEEVTL 300
Score = 69.3 bits (168), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 28/53 (52%), Positives = 41/53 (77%)
Query: 1 MTLKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSSTTQGRLDSFFTI 53
+TLKW +PD +GL++Y+ +K F+EDRIR+GA+KL K + QGRLD FF++
Sbjct: 298 VTLKWKEPDVEGLIQYMVREKGFSEDRIRSGAEKLKKGLKTGVQGRLDGFFSV 350
Score = 68.9 bits (167), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 29/55 (52%), Positives = 41/55 (74%)
Query: 405 EQGKLKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSTTTQGRLDSFFTI 459
E+ LKW +PD +GL++Y+ +K F+EDRIR+GA+KL K T QGRLD FF++
Sbjct: 296 EEVTLKWKEPDVEGLIQYMVREKGFSEDRIRSGAEKLKKGLKTGVQGRLDGFFSV 350
>gi|380479712|emb|CCF42855.1| XPG domain-containing protein [Colletotrichum higginsianum]
Length = 394
Score = 172 bits (437), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 78/137 (56%), Positives = 104/137 (75%), Gaps = 3/137 (2%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVLE 120
AP EAEAQCA + +AGKVYA A+EDMD LTF + ILLRH+TFSE RK P+QE H++KVLE
Sbjct: 155 APTEAEAQCAVLARAGKVYAAASEDMDTLTFDTPILLRHLTFSEQRKEPIQEVHIDKVLE 214
Query: 121 GMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILE---NIDTKKYTVP 177
G+ + ++F+D CILLGCDY D I +GP A++LI+EH +E ++E N +KY +P
Sbjct: 215 GLGMERKQFVDFCILLGCDYLDPIPKVGPSTALKLIREHGDLETLVEAFKNDPKQKYVIP 274
Query: 178 EGWLYKEARELFRHPEV 194
E W Y++ARELF +P+V
Sbjct: 275 EDWPYQDARELFLNPDV 291
Score = 130 bits (326), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 60/112 (53%), Positives = 84/112 (75%), Gaps = 7/112 (6%)
Query: 303 IELVADVAPSSIRES-------RKICIDASMSLYQFLIAVRSEGNQLMSVDGEPTSHLMG 355
+++ + AP +I+E RK+ IDASMS+Y FLIAVRS+G QL + GE TSHLMG
Sbjct: 7 FQIIKEEAPDAIKEGEIKAHFGRKVAIDASMSIYSFLIAVRSDGQQLTNESGETTSHLMG 66
Query: 356 TFYRTIRLVEHGLKPIYVFDGKPPTLKSGELNKRMEKREDAQKALAKAQEQG 407
FYRT+R+V++G+KP+YVFDG PP LKSGEL KR +++++A + L +A+E G
Sbjct: 67 LFYRTLRMVDNGIKPLYVFDGAPPKLKSGELAKRFQRKQEATEGLEEAKETG 118
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 37/84 (44%), Positives = 55/84 (65%), Gaps = 8/84 (9%)
Query: 217 IRGIGPKRAIELLYSFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILE---NID 273
+ G+G +R F+D CILLGCDY D I +GP A++LI+EH +E ++E N
Sbjct: 213 LEGLGMERK-----QFVDFCILLGCDYLDPIPKVGPSTALKLIREHGDLETLVEAFKNDP 267
Query: 274 TKKYTVPEGWLYKEARELFRHPEI 297
+KY +PE W Y++ARELF +P++
Sbjct: 268 KQKYVIPEDWPYQDARELFLNPDV 291
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 28/60 (46%), Positives = 37/60 (61%), Gaps = 1/60 (1%)
Query: 3 LKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSSTTQGRLDSFF-TIRREEKRKA 61
KW PD +GLV+YL +K F+EDR+R +L K S+ Q RLD FF I + E+ KA
Sbjct: 301 FKWEKPDMEGLVQYLVTEKGFSEDRVRGAGARLEKNLKSSQQVRLDGFFKVIPKTEEEKA 360
Score = 55.1 bits (131), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 23/51 (45%), Positives = 32/51 (62%)
Query: 409 LKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSTTTQGRLDSFFTI 459
KW PD +GLV+YL +K F+EDR+R +L K ++ Q RLD FF +
Sbjct: 301 FKWEKPDMEGLVQYLVTEKGFSEDRVRGAGARLEKNLKSSQQVRLDGFFKV 351
>gi|367031946|ref|XP_003665256.1| hypothetical protein MYCTH_2308790 [Myceliophthora thermophila ATCC
42464]
gi|347012527|gb|AEO60011.1| hypothetical protein MYCTH_2308790 [Myceliophthora thermophila ATCC
42464]
Length = 395
Score = 172 bits (437), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 79/137 (57%), Positives = 104/137 (75%), Gaps = 3/137 (2%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVLE 120
AP EAEAQCA + +AGKVYA A+EDMD L F + ILLRH+TFSE RK P+QE H+ KVLE
Sbjct: 155 APTEAEAQCAVLARAGKVYAAASEDMDTLCFDAPILLRHLTFSEQRKEPIQEIHVSKVLE 214
Query: 121 GMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILE---NIDTKKYTVP 177
G+ + ++F+DLCILLGCDY D I +GP A++LI+EH S+EK++E N +YTVP
Sbjct: 215 GLNMDRKQFVDLCILLGCDYLDPIPKVGPSTALKLIREHGSLEKVVEFMKNDPKGRYTVP 274
Query: 178 EGWLYKEARELFRHPEV 194
+ W +++ARELF P+V
Sbjct: 275 DDWPFEDARELFFSPDV 291
Score = 131 bits (330), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 60/110 (54%), Positives = 84/110 (76%), Gaps = 7/110 (6%)
Query: 305 LVADVAPSSIRES-------RKICIDASMSLYQFLIAVRSEGNQLMSVDGEPTSHLMGTF 357
++ + AP +I+E RK+ IDASMS+Y FLIAVRS+G QLM+ GE TSHLMG F
Sbjct: 9 IIKEEAPDAIKEGDIKNQFGRKVAIDASMSIYSFLIAVRSDGQQLMNESGETTSHLMGMF 68
Query: 358 YRTIRLVEHGLKPIYVFDGKPPTLKSGELNKRMEKREDAQKALAKAQEQG 407
YRT+R+V++G+KP+YVFDG PP LKSGEL +R +++++A + L +A+E G
Sbjct: 69 YRTLRMVDNGIKPLYVFDGAPPKLKSGELARRFQRKQEATEGLEEAKETG 118
Score = 83.2 bits (204), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 36/69 (52%), Positives = 51/69 (73%), Gaps = 3/69 (4%)
Query: 232 FIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILE---NIDTKKYTVPEGWLYKEA 288
F+DLCILLGCDY D I +GP A++LI+EH S+EK++E N +YTVP+ W +++A
Sbjct: 223 FVDLCILLGCDYLDPIPKVGPSTALKLIREHGSLEKVVEFMKNDPKGRYTVPDDWPFEDA 282
Query: 289 RELFRHPEI 297
RELF P++
Sbjct: 283 RELFFSPDV 291
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/61 (40%), Positives = 39/61 (63%), Gaps = 2/61 (3%)
Query: 3 LKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSSTTQGRLDSFFTI--RREEKRK 60
KW PD +GLV++L +K F+EDR+R G +L K S+ Q R++ FF + + EE++
Sbjct: 301 FKWEKPDIEGLVQFLVHEKGFSEDRVRAGGARLEKNLKSSQQSRIEGFFKVLPKTEEEKA 360
Query: 61 A 61
A
Sbjct: 361 A 361
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 33/51 (64%)
Query: 409 LKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSTTTQGRLDSFFTI 459
KW PD +GLV++L +K F+EDR+R G +L K ++ Q R++ FF +
Sbjct: 301 FKWEKPDIEGLVQFLVHEKGFSEDRVRAGGARLEKNLKSSQQSRIEGFFKV 351
>gi|290997255|ref|XP_002681197.1| predicted protein [Naegleria gruberi]
gi|317374913|sp|D2V434.1|FEN1_NAEGR RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|284094820|gb|EFC48453.1| predicted protein [Naegleria gruberi]
Length = 387
Score = 172 bits (436), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 76/135 (56%), Positives = 107/135 (79%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVLE 120
AP EAEAQCA + K G VYATATEDMDALT+ + +L RH+TFSEARK P+QEF ++V+E
Sbjct: 155 APGEAEAQCAELCKGGLVYATATEDMDALTYATPVLARHLTFSEARKQPIQEFTFKQVIE 214
Query: 121 GMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGW 180
G+ ++ ++FID+CIL GCDY DSI+GIGPK+A+ +IK++ +IE +L+NI+ K Y P +
Sbjct: 215 GLGVTVDQFIDICILCGCDYTDSIKGIGPKKALAMIKKYGNIENLLKNIEGKHYQAPSEF 274
Query: 181 LYKEARELFRHPEVA 195
Y+E R +F++P+V
Sbjct: 275 PYEEVRNIFKNPDVT 289
Score = 116 bits (290), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 64/147 (43%), Positives = 94/147 (63%), Gaps = 15/147 (10%)
Query: 304 ELVADVAPSSIRE-------SRKICIDASMSLYQFLIAVRSEGNQLMSVDGEPTSHLMGT 356
+L+ D A S++E RK+ IDASM++YQFLIA+++ G L DGE T+HL G
Sbjct: 8 QLILDEAKDSVKEDQLKNYFGRKVAIDASMAMYQFLIALKNTGMDLTDKDGEVTNHLQGL 67
Query: 357 FYRTIRLVEHGLKPIYVFDGKPPTLKSGELNKRMEKREDAQKALAKAQEQGKLKWSDPDE 416
RT +++E+G+KP YVFDGKPP LKSGEL KR E++++A + A AQE+G DE
Sbjct: 68 LARTTKMLEYGIKPCYVFDGKPPQLKSGELEKRKERQKEAMEQFALAQEEG-------DE 120
Query: 417 DGLVKYLCGDKNFAEDRIRNGAKKLLK 443
+ +V + +++ +G KKLL+
Sbjct: 121 EKMVMWNKRTTRMTKEQSNDG-KKLLR 146
Score = 89.7 bits (221), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 50/139 (35%), Positives = 77/139 (55%), Gaps = 21/139 (15%)
Query: 232 FIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGWLYKEAREL 291
FID+CIL GCDY DSI+GIGPK+A+ +IK++ +IE +L+NI+ K Y P + Y+E R +
Sbjct: 223 FIDICILCGCDYTDSIKGIGPKKALAMIKKYGNIENLLKNIEGKHYQAPSEFPYEEVRNI 282
Query: 292 FRHPEIADPETIELVADVAPSS-IRESRKICIDASMSLYQFLIA--------VRSEGNQL 342
F++P DV PSS + ++ K L +FL+ VR ++
Sbjct: 283 FKNP------------DVTPSSELVDTMKWTEPDEEGLIEFLVKEKQFDEERVRGYIKRI 330
Query: 343 MSVDGEPTSHLMGTFYRTI 361
S G+PT + F+ +
Sbjct: 331 KSSRGKPTQTRLDGFFTPV 349
Score = 60.1 bits (144), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 24/51 (47%), Positives = 37/51 (72%)
Query: 2 TLKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSSTTQGRLDSFFT 52
T+KW++PDE+GL+++L +K F E+R+R K++ +R TQ RLD FFT
Sbjct: 297 TMKWTEPDEEGLIEFLVKEKQFDEERVRGYIKRIKSSRGKPTQTRLDGFFT 347
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 23/50 (46%), Positives = 36/50 (72%)
Query: 409 LKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSTTTQGRLDSFFT 458
+KW++PDE+GL+++L +K F E+R+R K++ +R TQ RLD FFT
Sbjct: 298 MKWTEPDEEGLIEFLVKEKQFDEERVRGYIKRIKSSRGKPTQTRLDGFFT 347
>gi|67524613|ref|XP_660368.1| hypothetical protein AN2764.2 [Aspergillus nidulans FGSC A4]
gi|74597180|sp|Q5B9L6.1|FEN1_EMENI RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|40744016|gb|EAA63198.1| hypothetical protein AN2764.2 [Aspergillus nidulans FGSC A4]
gi|259486319|tpe|CBF84062.1| TPA: 5' to 3' exonuclease, 5' flap endonuclease (Eurofung)
[Aspergillus nidulans FGSC A4]
Length = 395
Score = 172 bits (436), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 78/139 (56%), Positives = 106/139 (76%), Gaps = 3/139 (2%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVLE 120
AP EAEAQCA + +AGKVYA A+EDMD L F + ILLRH+TFSE RK P+QE HL + LE
Sbjct: 155 APTEAEAQCAVLARAGKVYAAASEDMDTLCFEAPILLRHLTFSEQRKEPIQEIHLNRALE 214
Query: 121 GMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENID---TKKYTVP 177
G+ + +FIDLCILLGCDY + I +GP A++LI++H ++EK++E+I+ +KY +P
Sbjct: 215 GLGMDRNQFIDLCILLGCDYLEPIPKVGPNTALKLIRDHGTLEKVVESIEKDPKQKYVIP 274
Query: 178 EGWLYKEARELFRHPEVAD 196
E W Y++ARELF +P+V D
Sbjct: 275 ESWPYQDARELFLNPDVRD 293
Score = 131 bits (330), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 63/111 (56%), Positives = 83/111 (74%), Gaps = 7/111 (6%)
Query: 304 ELVADVAPSSIRES-------RKICIDASMSLYQFLIAVRSEGNQLMSVDGEPTSHLMGT 356
+++A+ AP +I+ RK+ IDASMS+Y FLIAVRSEG QLMS GE TSHLMG
Sbjct: 8 QVIAENAPDAIKAGDIKNHFGRKVAIDASMSIYSFLIAVRSEGQQLMSDTGETTSHLMGM 67
Query: 357 FYRTIRLVEHGLKPIYVFDGKPPTLKSGELNKRMEKREDAQKALAKAQEQG 407
FYRT+R+V++G+KP+YVFDG PP LKSGEL KR ++ +A +A +A+E G
Sbjct: 68 FYRTLRMVDNGIKPLYVFDGAPPKLKSGELAKRSARKHEATEAHEEAKETG 118
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 42/92 (45%), Positives = 64/92 (69%), Gaps = 7/92 (7%)
Query: 215 DSIRGIGPKRAIELL----YSFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILE 270
+ I+ I RA+E L FIDLCILLGCDY + I +GP A++LI++H ++EK++E
Sbjct: 202 EPIQEIHLNRALEGLGMDRNQFIDLCILLGCDYLEPIPKVGPNTALKLIRDHGTLEKVVE 261
Query: 271 NID---TKKYTVPEGWLYKEARELFRHPEIAD 299
+I+ +KY +PE W Y++ARELF +P++ D
Sbjct: 262 SIEKDPKQKYVIPESWPYQDARELFLNPDVRD 293
Score = 58.9 bits (141), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 26/49 (53%), Positives = 31/49 (63%)
Query: 409 LKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSTTTQGRLDSFF 457
KW PD +GLV +L DK F EDR+RNGA +L K T Q RL+ FF
Sbjct: 301 FKWEAPDIEGLVDFLVKDKGFNEDRVRNGAARLQKNLKTAQQSRLEGFF 349
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/49 (51%), Positives = 31/49 (63%)
Query: 3 LKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSSTTQGRLDSFF 51
KW PD +GLV +L DK F EDR+RNGA +L K + Q RL+ FF
Sbjct: 301 FKWEAPDIEGLVDFLVKDKGFNEDRVRNGAARLQKNLKTAQQSRLEGFF 349
>gi|320590957|gb|EFX03398.1| DNA-repair protein rad2 [Grosmannia clavigera kw1407]
Length = 856
Score = 172 bits (436), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 81/144 (56%), Positives = 109/144 (75%), Gaps = 6/144 (4%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVLE 120
AP EAEAQCA + +AGKVYA A+EDMD L F + ILLRH+TFSE RK P+QE HL+K+L
Sbjct: 617 APTEAEAQCAELARAGKVYAAASEDMDTLCFNTPILLRHLTFSEQRKEPIQEIHLDKLLL 676
Query: 121 GMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDT---KKYTVP 177
G+ + E+F+DLCILLGCDY D I +GP A++LI+EH S+EK++E + T +K+ +P
Sbjct: 677 GLNMEREQFVDLCILLGCDYLDPIPKVGPNTALKLIREHGSLEKVVEFMKTDKKQKFVIP 736
Query: 178 EGWLYKEARELFRHPEV---ADPE 198
+ W Y++ARELF P+V +DPE
Sbjct: 737 DDWPYEDARELFFKPDVRSASDPE 760
Score = 112 bits (280), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 53/92 (57%), Positives = 68/92 (73%)
Query: 316 ESRKICIDASMSLYQFLIAVRSEGNQLMSVDGEPTSHLMGTFYRTIRLVEHGLKPIYVFD 375
ES SMS+Y FLIAVRSEG L S GE TSHLMG FYRT+R+V++G+KP+YVFD
Sbjct: 489 ESPHFRFLTSMSIYSFLIAVRSEGQMLTSDAGETTSHLMGMFYRTLRMVDNGIKPLYVFD 548
Query: 376 GKPPTLKSGELNKRMEKREDAQKALAKAQEQG 407
G PP LKSGEL +R ++++A + L +A+E G
Sbjct: 549 GAPPKLKSGELARRYMRKQEATEGLEEAKETG 580
Score = 85.1 bits (209), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 38/76 (50%), Positives = 56/76 (73%), Gaps = 6/76 (7%)
Query: 232 FIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDT---KKYTVPEGWLYKEA 288
F+DLCILLGCDY D I +GP A++LI+EH S+EK++E + T +K+ +P+ W Y++A
Sbjct: 685 FVDLCILLGCDYLDPIPKVGPNTALKLIREHGSLEKVVEFMKTDKKQKFVIPDDWPYEDA 744
Query: 289 RELFRHPEI---ADPE 301
RELF P++ +DPE
Sbjct: 745 RELFFKPDVRSASDPE 760
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/61 (44%), Positives = 38/61 (62%), Gaps = 2/61 (3%)
Query: 3 LKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSSTTQGRLDSFF--TIRREEKRK 60
KW PD GLV++L +K F+EDR+R+ A +L K T Q RL+ FF + EE++K
Sbjct: 763 FKWEKPDVPGLVQFLVNEKGFSEDRVRSAAARLEKHLKGTQQQRLEGFFKPVPKTEEEQK 822
Query: 61 A 61
A
Sbjct: 823 A 823
Score = 52.8 bits (125), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 26/61 (42%), Positives = 38/61 (62%), Gaps = 2/61 (3%)
Query: 409 LKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSTTTQGRLDSFF--TIRREEKRK 466
KW PD GLV++L +K F+EDR+R+ A +L K T Q RL+ FF + EE++K
Sbjct: 763 FKWEKPDVPGLVQFLVNEKGFSEDRVRSAAARLEKHLKGTQQQRLEGFFKPVPKTEEEQK 822
Query: 467 S 467
+
Sbjct: 823 A 823
>gi|401424227|ref|XP_003876599.1| putative flap endonuclease-1 (FEN-1) [Leishmania mexicana
MHOM/GT/2001/U1103]
gi|322492842|emb|CBZ28120.1| putative flap endonuclease-1 (FEN-1) [Leishmania mexicana
MHOM/GT/2001/U1103]
Length = 395
Score = 172 bits (436), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 80/143 (55%), Positives = 105/143 (73%)
Query: 60 KAPCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVL 119
+AP EAEAQCA +VK GK +A TEDMDALTFGS I+LRH+ S+A+K PV E HL++VL
Sbjct: 158 QAPSEAEAQCAELVKKGKAWAVGTEDMDALTFGSTIMLRHLNISDAKKRPVAEIHLDEVL 217
Query: 120 EGMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEG 179
+ LS ++F+DLCILLGCDY + GIGP++A E I+ + SIE LE++DT K+ VP
Sbjct: 218 QTTGLSMDQFVDLCILLGCDYVPKVPGIGPQKAWEGIQRYGSIESFLESLDTTKHPVPAD 277
Query: 180 WLYKEARELFRHPEVADPETIEF 202
+ YKEAR F++PEV E I+
Sbjct: 278 FYYKEARAFFQNPEVTRAEEIDI 300
Score = 107 bits (266), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 54/115 (46%), Positives = 79/115 (68%), Gaps = 11/115 (9%)
Query: 304 ELVADVAPSSIRE-------SRKICIDASMSLYQFLIAVRS----EGNQLMSVDGEPTSH 352
+L+ D +P++IRE R+I IDASMS+YQF+IA++ +G +L + G+ TSH
Sbjct: 8 KLLYDKSPNAIREQEMKNFFGRRIAIDASMSIYQFIIAMKGFQDGQGLELTNEKGDVTSH 67
Query: 353 LMGTFYRTIRLVEHGLKPIYVFDGKPPTLKSGELNKRMEKREDAQKALAKAQEQG 407
L G F RT+R+++ G+KPIYVFDGKPP LK+ EL R +K +A+K KA++ G
Sbjct: 68 LNGLFARTLRMIDEGIKPIYVFDGKPPKLKADELEARRQKAAEAEKEFEKAKDAG 122
Score = 86.7 bits (213), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 38/74 (51%), Positives = 53/74 (71%)
Query: 232 FIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGWLYKEAREL 291
F+DLCILLGCDY + GIGP++A E I+ + SIE LE++DT K+ VP + YKEAR
Sbjct: 227 FVDLCILLGCDYVPKVPGIGPQKAWEGIQRYGSIESFLESLDTTKHPVPADFYYKEARAF 286
Query: 292 FRHPEIADPETIEL 305
F++PE+ E I++
Sbjct: 287 FQNPEVTRAEEIDI 300
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/84 (35%), Positives = 49/84 (58%), Gaps = 1/84 (1%)
Query: 1 MTLKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSSTTQGRLDSFFTIRREEKRK 60
+ +++S+PDE GL+++L +K F DR+ G +L A + TQGRLDSFFT+ + ++
Sbjct: 298 IDIQFSEPDEAGLIQFLVKEKLFNPDRVDKGIARLRTALTRKTQGRLDSFFTVTKVPQQT 357
Query: 61 APCEAEAQCAAMVKAGK-VYATAT 83
A A + GK V+ + T
Sbjct: 358 AAARAPLAGTKRPRDGKLVHVSGT 381
Score = 55.8 bits (133), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 25/57 (43%), Positives = 39/57 (68%)
Query: 405 EQGKLKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSTTTQGRLDSFFTIRR 461
E+ +++S+PDE GL+++L +K F DR+ G +L A + TQGRLDSFFT+ +
Sbjct: 296 EEIDIQFSEPDEAGLIQFLVKEKLFNPDRVDKGIARLRTALTRKTQGRLDSFFTVTK 352
>gi|67470614|ref|XP_651270.1| FEN-1 nuclease [Entamoeba histolytica HM-1:IMSS]
gi|317374901|sp|C4M6G8.1|FEN1_ENTHI RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|56467989|gb|EAL45884.1| FEN-1 nuclease, putative [Entamoeba histolytica HM-1:IMSS]
gi|449710440|gb|EMD49517.1| Flap endonuclease, putative [Entamoeba histolytica KU27]
Length = 376
Score = 172 bits (436), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 80/136 (58%), Positives = 106/136 (77%), Gaps = 1/136 (0%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVLE 120
A CEAE CAA+VKAGK YATATEDMDALT GS ++R + ++ +K P++E+ L +LE
Sbjct: 156 ANCEAEGTCAALVKAGKCYATATEDMDALTLGSEHVVRKFSANDNKKDPIREYSLSSILE 215
Query: 121 GMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGW 180
+ E+FIDLCILLGCDYC++I+G+GP A ELI++++SIE IL+++ + KY VPE W
Sbjct: 216 ETGFTMEQFIDLCILLGCDYCETIKGVGPITAFELIQQYKSIENILQHL-SDKYKVPENW 274
Query: 181 LYKEARELFRHPEVAD 196
YKEARELF HP+VAD
Sbjct: 275 KYKEARELFLHPDVAD 290
Score = 114 bits (286), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 59/112 (52%), Positives = 79/112 (70%), Gaps = 8/112 (7%)
Query: 304 ELVADVAPSSIRES-------RKICIDASMSLYQFLIAVR-SEGNQLMSVDGEPTSHLMG 355
+L+A AP S++E R I IDAS+ +YQF+ AVR + G ++ GE TSH++G
Sbjct: 8 KLLARYAPKSMKEGKIDQYSGRVIAIDASILVYQFISAVRDTTGATMVDEFGETTSHIIG 67
Query: 356 TFYRTIRLVEHGLKPIYVFDGKPPTLKSGELNKRMEKREDAQKALAKAQEQG 407
TFYRTI+L+E G+KPIYVFDGKPP +K GEL+KR E + AQ+ L KA E+G
Sbjct: 68 TFYRTIKLIESGIKPIYVFDGKPPEMKDGELHKRKENAQKAQEQLDKALEEG 119
Score = 102 bits (254), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 44/68 (64%), Positives = 58/68 (85%), Gaps = 1/68 (1%)
Query: 232 FIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGWLYKEAREL 291
FIDLCILLGCDYC++I+G+GP A ELI++++SIE IL+++ + KY VPE W YKEAREL
Sbjct: 224 FIDLCILLGCDYCETIKGVGPITAFELIQQYKSIENILQHL-SDKYKVPENWKYKEAREL 282
Query: 292 FRHPEIAD 299
F HP++AD
Sbjct: 283 FLHPDVAD 290
Score = 60.1 bits (144), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 25/54 (46%), Positives = 38/54 (70%)
Query: 408 KLKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSTTTQGRLDSFFTIRR 461
KL+W+ DE+G+ KYL +K+F E+R+ G +KL +S QGRLDSFF +++
Sbjct: 295 KLEWNKIDEEGIKKYLVTEKHFNEERVSKGIEKLKNVKSKKAQGRLDSFFNVKK 348
Score = 59.7 bits (143), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 32/82 (39%), Positives = 49/82 (59%), Gaps = 6/82 (7%)
Query: 3 LKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSSTTQGRLDSFFTIRREEKRKAP 62
L+W+ DE+G+ KYL +K+F E+R+ G +KL +S QGRLDSFF + +K P
Sbjct: 296 LEWNKIDEEGIKKYLVTEKHFNEERVSKGIEKLKNVKSKKAQGRLDSFFNV-----KKVP 350
Query: 63 CEAEAQCAAMVKAGKVYATATE 84
++++ A+ VK K A E
Sbjct: 351 L-SKSEAASGVKRKKPTTKAKE 371
>gi|349579452|dbj|GAA24614.1| K7_Rad27p [Saccharomyces cerevisiae Kyokai no. 7]
Length = 382
Score = 172 bits (436), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 83/147 (56%), Positives = 106/147 (72%), Gaps = 5/147 (3%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVLE 120
AP EAEAQCA + K GKVYA A+EDMD L + + LLRH+TFSEA+K P+ E E VL
Sbjct: 153 APTEAEAQCAELAKKGKVYAAASEDMDTLCYRTPFLLRHLTFSEAKKEPIHEIDTELVLR 212
Query: 121 GMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDT-----KKYT 175
G++L+ E+F+DLCI+LGCDYC+SIRG+GP A++LIK H SIEKI+E I++ K+
Sbjct: 213 GLDLTIEQFVDLCIMLGCDYCESIRGVGPVTALKLIKTHGSIEKIVEFIESGESNNTKWK 272
Query: 176 VPEGWLYKEARELFRHPEVADPETIEF 202
+PE W YK+AR LF PEV D I
Sbjct: 273 IPEDWPYKQARMLFLDPEVIDGNEINL 299
Score = 122 bits (305), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 61/107 (57%), Positives = 80/107 (74%), Gaps = 8/107 (7%)
Query: 305 LVADVAPSSIRES-------RKICIDASMSLYQFLIAVRS-EGNQLMSVDGEPTSHLMGT 356
++++ PS+IR+S RK+ IDASMSLYQFLIAVR +G QL + GE TSHLMG
Sbjct: 9 IISEHVPSAIRKSDIKSFFGRKVAIDASMSLYQFLIAVRQQDGGQLTNEAGETTSHLMGM 68
Query: 357 FYRTIRLVEHGLKPIYVFDGKPPTLKSGELNKRMEKREDAQKALAKA 403
FYRT+R++++G+KP YVFDGKPP LKS EL KR +R + +K LA+A
Sbjct: 69 FYRTLRMIDNGIKPCYVFDGKPPDLKSHELTKRSSRRVETEKKLAEA 115
Score = 97.1 bits (240), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 72/192 (37%), Positives = 96/192 (50%), Gaps = 40/192 (20%)
Query: 126 HEEFIDLCILLGCDYCDSIRGIGPKRA----IELIKEHRSIEKILENIDTKKYTVPEGWL 181
+EE L L+G Y I P A EL K+ + E++DT Y P
Sbjct: 136 NEEAQKLLGLMGIPYI-----IAPTEAEAQCAELAKKGKVYAAASEDMDTLCYRTPF--- 187
Query: 182 YKEARELFRHPEV--ADPETIEFIDLCILLGCDYCDSIRGIGPKRAIEL-LYSFIDLCIL 238
L RH A E I ID ++L R ++L + F+DLCI+
Sbjct: 188 ------LLRHLTFSEAKKEPIHEIDTELVL--------------RGLDLTIEQFVDLCIM 227
Query: 239 LGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDT-----KKYTVPEGWLYKEARELFR 293
LGCDYC+SIRG+GP A++LIK H SIEKI+E I++ K+ +PE W YK+AR LF
Sbjct: 228 LGCDYCESIRGVGPVTALKLIKTHGSIEKIVEFIESGESNNTKWKIPEDWPYKQARMLFL 287
Query: 294 HPEIADPETIEL 305
PE+ D I L
Sbjct: 288 DPEVIDGNEINL 299
Score = 63.2 bits (152), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 26/53 (49%), Positives = 37/53 (69%)
Query: 1 MTLKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSSTTQGRLDSFFTI 53
+ LKWS P E L++YLC DK F+E+R+++G +L K S+ QGRLD FF +
Sbjct: 297 INLKWSPPKEKELIEYLCDDKKFSEERVKSGISRLKKGLKSSIQGRLDGFFQV 349
Score = 61.6 bits (148), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 25/51 (49%), Positives = 36/51 (70%)
Query: 409 LKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSTTTQGRLDSFFTI 459
LKWS P E L++YLC DK F+E+R+++G +L K ++ QGRLD FF +
Sbjct: 299 LKWSPPKEKELIEYLCDDKKFSEERVKSGISRLKKGLKSSIQGRLDGFFQV 349
>gi|367008554|ref|XP_003678778.1| hypothetical protein TDEL_0A02350 [Torulaspora delbrueckii]
gi|359746435|emb|CCE89567.1| hypothetical protein TDEL_0A02350 [Torulaspora delbrueckii]
Length = 380
Score = 172 bits (435), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 81/146 (55%), Positives = 107/146 (73%), Gaps = 4/146 (2%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVLE 120
AP EAEAQCA + K GKVYA A+EDMD L + + LLRH+TFSEA+K P+ E E VL
Sbjct: 153 APTEAEAQCAELAKKGKVYAAASEDMDTLCYRTPYLLRHLTFSEAKKEPIHEIDTETVLN 212
Query: 121 GMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDT----KKYTV 176
G+ L+ E+F+DL I+LGCDYC+SIRG+GP A++LIKEH S+EKI+E +++ K+ +
Sbjct: 213 GLGLTIEQFVDLGIMLGCDYCESIRGVGPVTALKLIKEHGSLEKIIEFVESDESNSKWKI 272
Query: 177 PEGWLYKEARELFRHPEVADPETIEF 202
PE W YKEARELF +P+V D +
Sbjct: 273 PEDWPYKEARELFLNPDVIDGNEVNL 298
Score = 124 bits (310), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 60/111 (54%), Positives = 83/111 (74%), Gaps = 8/111 (7%)
Query: 305 LVADVAPSSIRES-------RKICIDASMSLYQFLIAVRS-EGNQLMSVDGEPTSHLMGT 356
++++ P+++R+S RK+ IDASMSLYQFLIAVR +G QL + GE TSHLMG
Sbjct: 9 IISEHVPTAVRKSDIKSFFGRKVAIDASMSLYQFLIAVRQQDGAQLSTETGETTSHLMGI 68
Query: 357 FYRTIRLVEHGLKPIYVFDGKPPTLKSGELNKRMEKREDAQKALAKAQEQG 407
FYRT+R++++G+KP YVFDGKPP +KS EL KR +RE+ +K LA+A +Q
Sbjct: 69 FYRTLRMIDNGIKPCYVFDGKPPVMKSHELGKRSSRREETEKKLAEAIDQA 119
Score = 95.9 bits (237), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 42/78 (53%), Positives = 59/78 (75%), Gaps = 4/78 (5%)
Query: 232 FIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDT----KKYTVPEGWLYKE 287
F+DL I+LGCDYC+SIRG+GP A++LIKEH S+EKI+E +++ K+ +PE W YKE
Sbjct: 221 FVDLGIMLGCDYCESIRGVGPVTALKLIKEHGSLEKIIEFVESDESNSKWKIPEDWPYKE 280
Query: 288 ARELFRHPEIADPETIEL 305
ARELF +P++ D + L
Sbjct: 281 ARELFLNPDVIDGNEVNL 298
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/53 (47%), Positives = 34/53 (64%)
Query: 1 MTLKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSSTTQGRLDSFFTI 53
+ LKWS P ED L+ +LC K F+E+R+R+G +L K S Q RLD FF +
Sbjct: 296 VNLKWSPPKEDELIDFLCNQKKFSEERVRSGIVRLKKGLKSGVQVRLDGFFQV 348
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 24/51 (47%), Positives = 33/51 (64%)
Query: 409 LKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSTTTQGRLDSFFTI 459
LKWS P ED L+ +LC K F+E+R+R+G +L K + Q RLD FF +
Sbjct: 298 LKWSPPKEDELIDFLCNQKKFSEERVRSGIVRLKKGLKSGVQVRLDGFFQV 348
>gi|241958594|ref|XP_002422016.1| structure-specific endonuclease, putative [Candida dubliniensis
CD36]
gi|317374881|sp|B9WLQ5.1|FEN1_CANDC RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|223645361|emb|CAX40017.1| structure-specific endonuclease, putative [Candida dubliniensis
CD36]
Length = 372
Score = 172 bits (435), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 79/144 (54%), Positives = 105/144 (72%), Gaps = 2/144 (1%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVLE 120
APCEAEAQCA + + GKVYA A+EDMD L + LLRH+TFSEARK+P+ + + +
Sbjct: 156 APCEAEAQCAELARGGKVYAAASEDMDTLCYEPPFLLRHLTFSEARKMPIDQIEYKDAIA 215
Query: 121 GMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENI--DTKKYTVPE 178
G++++ E+FIDLCILLGCDYC+SI+GIG A +LIKEH S++ I+E I + KYT+PE
Sbjct: 216 GLDMTKEQFIDLCILLGCDYCESIKGIGQATAFKLIKEHGSLDNIVEWIKNNKTKYTLPE 275
Query: 179 GWLYKEARELFRHPEVADPETIEF 202
W Y EAR+LF +PEV + I
Sbjct: 276 NWPYDEARQLFMNPEVTNANEISL 299
Score = 123 bits (309), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 62/114 (54%), Positives = 82/114 (71%), Gaps = 8/114 (7%)
Query: 304 ELVADVAPSSIRE-------SRKICIDASMSLYQFLIAVR-SEGNQLMSVDGEPTSHLMG 355
+L+ + +PS+ +E RK+ IDASM LYQFLIAVR S+G QL + DGE TSHL G
Sbjct: 8 QLIKEHSPSAYKEFQLKNLFGRKVAIDASMCLYQFLIAVRQSDGQQLTNEDGETTSHLSG 67
Query: 356 TFYRTIRLVEHGLKPIYVFDGKPPTLKSGELNKRMEKREDAQKALAKAQEQGKL 409
FYRTI++VE+ +KP+YVFDGKPP LK GEL KR+ +RE+AQK ++G +
Sbjct: 68 MFYRTIKMVENNIKPVYVFDGKPPVLKGGELEKRLLRREEAQKQKTALGDEGTV 121
Score = 95.9 bits (237), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 48/96 (50%), Positives = 64/96 (66%), Gaps = 7/96 (7%)
Query: 212 DYCDSIRGIGPKRAIELLYSFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILEN 271
+Y D+I G+ + FIDLCILLGCDYC+SI+GIG A +LIKEH S++ I+E
Sbjct: 209 EYKDAIAGLDMTKE-----QFIDLCILLGCDYCESIKGIGQATAFKLIKEHGSLDNIVEW 263
Query: 272 I--DTKKYTVPEGWLYKEARELFRHPEIADPETIEL 305
I + KYT+PE W Y EAR+LF +PE+ + I L
Sbjct: 264 IKNNKTKYTLPENWPYDEARQLFMNPEVTNANEISL 299
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 31/63 (49%), Positives = 45/63 (71%), Gaps = 2/63 (3%)
Query: 1 MTLKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSSTTQGRLDSFFTIRR--EEK 58
++LKW +PD DGL++++ K F+EDRIR+GA+KL K QGRLD FF + + ++K
Sbjct: 297 ISLKWKEPDVDGLIEFMVRQKGFSEDRIRSGAEKLKKGLKGGVQGRLDGFFKVVKNDDKK 356
Query: 59 RKA 61
RKA
Sbjct: 357 RKA 359
Score = 66.6 bits (161), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 28/61 (45%), Positives = 41/61 (67%)
Query: 409 LKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSTTTQGRLDSFFTIRREEKRKSR 468
LKW +PD DGL++++ K F+EDRIR+GA+KL K QGRLD FF + + + +K +
Sbjct: 299 LKWKEPDVDGLIEFMVRQKGFSEDRIRSGAEKLKKGLKGGVQGRLDGFFKVVKNDDKKRK 358
Query: 469 C 469
Sbjct: 359 A 359
>gi|6322736|ref|NP_012809.1| Rad27p [Saccharomyces cerevisiae S288c]
gi|140964|sp|P26793.1|FEN1_YEAST RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1; AltName: Full=RAD2
homolog nuclease 1; Short=RTH1 nuclease; AltName:
Full=Structure-specific endonuclease RAD27
gi|317376170|sp|C7GVJ8.1|FEN1_YEAS2 RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|317376171|sp|A6ZZK4.1|FEN1_YEAS7 RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|317376172|sp|C8ZC62.1|FEN1_YEAS8 RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|248392|gb|AAB21998.1| RAD2 homolog [Saccharomyces cerevisiae]
gi|486190|emb|CAA81953.1| RAD27 [Saccharomyces cerevisiae]
gi|151941690|gb|EDN60052.1| 5'-3'-exonuclease [Saccharomyces cerevisiae YJM789]
gi|256269907|gb|EEU05165.1| Rad27p [Saccharomyces cerevisiae JAY291]
gi|259147728|emb|CAY80978.1| Rad27p [Saccharomyces cerevisiae EC1118]
gi|285813148|tpg|DAA09045.1| TPA: Rad27p [Saccharomyces cerevisiae S288c]
gi|323347750|gb|EGA82014.1| Rad27p [Saccharomyces cerevisiae Lalvin QA23]
gi|365764563|gb|EHN06085.1| Rad27p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
gi|392298324|gb|EIW09422.1| Rad27p [Saccharomyces cerevisiae CEN.PK113-7D]
Length = 382
Score = 172 bits (435), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 83/147 (56%), Positives = 106/147 (72%), Gaps = 5/147 (3%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVLE 120
AP EAEAQCA + K GKVYA A+EDMD L + + LLRH+TFSEA+K P+ E E VL
Sbjct: 153 APTEAEAQCAELAKKGKVYAAASEDMDTLCYRTPFLLRHLTFSEAKKEPIHEIDTELVLR 212
Query: 121 GMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDT-----KKYT 175
G++L+ E+F+DLCI+LGCDYC+SIRG+GP A++LIK H SIEKI+E I++ K+
Sbjct: 213 GLDLTIEQFVDLCIMLGCDYCESIRGVGPVTALKLIKTHGSIEKIVEFIESGESNNTKWK 272
Query: 176 VPEGWLYKEARELFRHPEVADPETIEF 202
+PE W YK+AR LF PEV D I
Sbjct: 273 IPEDWPYKQARMLFLDPEVIDGNEINL 299
Score = 122 bits (305), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 61/107 (57%), Positives = 80/107 (74%), Gaps = 8/107 (7%)
Query: 305 LVADVAPSSIRES-------RKICIDASMSLYQFLIAVRS-EGNQLMSVDGEPTSHLMGT 356
++++ PS+IR+S RK+ IDASMSLYQFLIAVR +G QL + GE TSHLMG
Sbjct: 9 IISEHVPSAIRKSDIKSFFGRKVAIDASMSLYQFLIAVRQQDGGQLTNEAGETTSHLMGM 68
Query: 357 FYRTIRLVEHGLKPIYVFDGKPPTLKSGELNKRMEKREDAQKALAKA 403
FYRT+R++++G+KP YVFDGKPP LKS EL KR +R + +K LA+A
Sbjct: 69 FYRTLRMIDNGIKPCYVFDGKPPDLKSHELTKRSSRRVETEKKLAEA 115
Score = 97.1 bits (240), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 72/192 (37%), Positives = 96/192 (50%), Gaps = 40/192 (20%)
Query: 126 HEEFIDLCILLGCDYCDSIRGIGPKRA----IELIKEHRSIEKILENIDTKKYTVPEGWL 181
+EE L L+G Y I P A EL K+ + E++DT Y P
Sbjct: 136 NEEAQKLLGLMGIPYI-----IAPTEAEAQCAELAKKGKVYAAASEDMDTLCYRTPF--- 187
Query: 182 YKEARELFRHPEV--ADPETIEFIDLCILLGCDYCDSIRGIGPKRAIEL-LYSFIDLCIL 238
L RH A E I ID ++L R ++L + F+DLCI+
Sbjct: 188 ------LLRHLTFSEAKKEPIHEIDTELVL--------------RGLDLTIEQFVDLCIM 227
Query: 239 LGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDT-----KKYTVPEGWLYKEARELFR 293
LGCDYC+SIRG+GP A++LIK H SIEKI+E I++ K+ +PE W YK+AR LF
Sbjct: 228 LGCDYCESIRGVGPVTALKLIKTHGSIEKIVEFIESGESNNTKWKIPEDWPYKQARMLFL 287
Query: 294 HPEIADPETIEL 305
PE+ D I L
Sbjct: 288 DPEVIDGNEINL 299
Score = 62.0 bits (149), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 26/53 (49%), Positives = 36/53 (67%)
Query: 1 MTLKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSSTTQGRLDSFFTI 53
+ LKWS P E L++YLC DK F+E+R+++G +L K S QGRLD FF +
Sbjct: 297 INLKWSPPKEKELIEYLCDDKKFSEERVKSGISRLKKGLKSGIQGRLDGFFQV 349
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/51 (49%), Positives = 35/51 (68%)
Query: 409 LKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSTTTQGRLDSFFTI 459
LKWS P E L++YLC DK F+E+R+++G +L K + QGRLD FF +
Sbjct: 299 LKWSPPKEKELIEYLCDDKKFSEERVKSGISRLKKGLKSGIQGRLDGFFQV 349
>gi|323332740|gb|EGA74145.1| Rad27p [Saccharomyces cerevisiae AWRI796]
Length = 370
Score = 172 bits (435), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 83/147 (56%), Positives = 106/147 (72%), Gaps = 5/147 (3%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVLE 120
AP EAEAQCA + K GKVYA A+EDMD L + + LLRH+TFSEA+K P+ E E VL
Sbjct: 141 APTEAEAQCAELAKKGKVYAAASEDMDTLCYRTPFLLRHLTFSEAKKEPIHEIDTELVLR 200
Query: 121 GMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDT-----KKYT 175
G++L+ E+F+DLCI+LGCDYC+SIRG+GP A++LIK H SIEKI+E I++ K+
Sbjct: 201 GLDLTIEQFVDLCIMLGCDYCESIRGVGPVTALKLIKTHGSIEKIVEFIESGESNNTKWK 260
Query: 176 VPEGWLYKEARELFRHPEVADPETIEF 202
+PE W YK+AR LF PEV D I
Sbjct: 261 IPEDWPYKQARMLFLDPEVIDGNEINL 287
Score = 116 bits (290), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 59/100 (59%), Positives = 74/100 (74%), Gaps = 1/100 (1%)
Query: 305 LVADVAPSSIRESRKICIDASMSLYQFLIAVRS-EGNQLMSVDGEPTSHLMGTFYRTIRL 363
L++ A S RK+ IDASMSLYQFLIAVR +G QL + GE TSHLMG FYRT+R+
Sbjct: 4 LLSGKAISRAFFGRKVAIDASMSLYQFLIAVRQQDGGQLTNEAGETTSHLMGMFYRTLRM 63
Query: 364 VEHGLKPIYVFDGKPPTLKSGELNKRMEKREDAQKALAKA 403
+++G+KP YVFDGKPP LKS EL KR +R + +K LA+A
Sbjct: 64 IDNGIKPCYVFDGKPPDLKSHELTKRSSRRVETEKKLAEA 103
Score = 97.1 bits (240), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 72/192 (37%), Positives = 96/192 (50%), Gaps = 40/192 (20%)
Query: 126 HEEFIDLCILLGCDYCDSIRGIGPKRA----IELIKEHRSIEKILENIDTKKYTVPEGWL 181
+EE L L+G Y I P A EL K+ + E++DT Y P
Sbjct: 124 NEEAQKLLGLMGIPYI-----IAPTEAEAQCAELAKKGKVYAAASEDMDTLCYRTPF--- 175
Query: 182 YKEARELFRHPEV--ADPETIEFIDLCILLGCDYCDSIRGIGPKRAIEL-LYSFIDLCIL 238
L RH A E I ID ++L R ++L + F+DLCI+
Sbjct: 176 ------LLRHLTFSEAKKEPIHEIDTELVL--------------RGLDLTIEQFVDLCIM 215
Query: 239 LGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDT-----KKYTVPEGWLYKEARELFR 293
LGCDYC+SIRG+GP A++LIK H SIEKI+E I++ K+ +PE W YK+AR LF
Sbjct: 216 LGCDYCESIRGVGPVTALKLIKTHGSIEKIVEFIESGESNNTKWKIPEDWPYKQARMLFL 275
Query: 294 HPEIADPETIEL 305
PE+ D I L
Sbjct: 276 DPEVIDGNEINL 287
Score = 62.0 bits (149), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 26/53 (49%), Positives = 36/53 (67%)
Query: 1 MTLKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSSTTQGRLDSFFTI 53
+ LKWS P E L++YLC DK F+E+R+++G +L K S QGRLD FF +
Sbjct: 285 INLKWSPPKEKELIEYLCDDKKFSEERVKSGISRLKKGLKSGIQGRLDGFFQV 337
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/51 (49%), Positives = 35/51 (68%)
Query: 409 LKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSTTTQGRLDSFFTI 459
LKWS P E L++YLC DK F+E+R+++G +L K + QGRLD FF +
Sbjct: 287 LKWSPPKEKELIEYLCDDKKFSEERVKSGISRLKKGLKSGIQGRLDGFFQV 337
>gi|346976080|gb|EGY19532.1| DNA-repair protein rad2 [Verticillium dahliae VdLs.17]
Length = 394
Score = 172 bits (435), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 76/137 (55%), Positives = 104/137 (75%), Gaps = 3/137 (2%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVLE 120
AP EAEAQCA + K GKVYA A+EDMD LTF + ILLRH+T+SE RK P+QE HL+KV+E
Sbjct: 155 APTEAEAQCAVLAKGGKVYAAASEDMDTLTFETPILLRHLTYSEQRKEPIQEIHLDKVME 214
Query: 121 GMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILE---NIDTKKYTVP 177
G+ + +F+DLCILLGCDY D + +GP A++LI+EH+++E +++ N KYT+P
Sbjct: 215 GLGMERNQFVDLCILLGCDYLDPVPKVGPSTALKLIREHKTLEGVVDYIKNDPKSKYTLP 274
Query: 178 EGWLYKEARELFRHPEV 194
E W + +ARELF +P+V
Sbjct: 275 EDWPFADARELFLNPDV 291
Score = 132 bits (333), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 61/112 (54%), Positives = 86/112 (76%), Gaps = 7/112 (6%)
Query: 303 IELVADVAPSSIRES-------RKICIDASMSLYQFLIAVRSEGNQLMSVDGEPTSHLMG 355
+++ + AP +I+E RK+ IDASMS+Y FLIAVRS+G QLM+ GE TSHLMG
Sbjct: 7 FQILKEEAPDAIKEGEIKNQFGRKVAIDASMSIYSFLIAVRSDGQQLMNESGETTSHLMG 66
Query: 356 TFYRTIRLVEHGLKPIYVFDGKPPTLKSGELNKRMEKREDAQKALAKAQEQG 407
FYRT+R+V++G+KP+YVFDG PP LKSGEL KR +++++A++ L +A+E G
Sbjct: 67 MFYRTLRMVDNGIKPLYVFDGAPPKLKSGELAKRFQRKQEAKEGLEEAKETG 118
Score = 82.0 bits (201), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 36/84 (42%), Positives = 57/84 (67%), Gaps = 8/84 (9%)
Query: 217 IRGIGPKRAIELLYSFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILE---NID 273
+ G+G +R F+DLCILLGCDY D + +GP A++LI+EH+++E +++ N
Sbjct: 213 MEGLGMERN-----QFVDLCILLGCDYLDPVPKVGPSTALKLIREHKTLEGVVDYIKNDP 267
Query: 274 TKKYTVPEGWLYKEARELFRHPEI 297
KYT+PE W + +ARELF +P++
Sbjct: 268 KSKYTLPEDWPFADARELFLNPDV 291
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 22/51 (43%), Positives = 31/51 (60%)
Query: 3 LKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSSTTQGRLDSFFTI 53
KW PD +GLV +L +K F+EDR+R+ +L K + Q RLD FF +
Sbjct: 301 FKWEKPDIEGLVTFLVTEKGFSEDRVRSAGARLEKNMKGSQQSRLDGFFKM 351
Score = 52.8 bits (125), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 22/51 (43%), Positives = 31/51 (60%)
Query: 409 LKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSTTTQGRLDSFFTI 459
KW PD +GLV +L +K F+EDR+R+ +L K + Q RLD FF +
Sbjct: 301 FKWEKPDIEGLVTFLVTEKGFSEDRVRSAGARLEKNMKGSQQSRLDGFFKM 351
>gi|363755676|ref|XP_003648053.1| hypothetical protein Ecym_7411 [Eremothecium cymbalariae
DBVPG#7215]
gi|356892089|gb|AET41236.1| hypothetical protein Ecym_7411 [Eremothecium cymbalariae
DBVPG#7215]
Length = 430
Score = 172 bits (435), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 81/144 (56%), Positives = 109/144 (75%), Gaps = 4/144 (2%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVLE 120
AP EAEAQCA + K GKV+A A+EDMD L + + LLRH+TFSEARK P+ E E VL+
Sbjct: 199 APSEAEAQCAELAKKGKVFAAASEDMDTLCYRTPYLLRHLTFSEARKEPIHEIDTELVLQ 258
Query: 121 GMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDT----KKYTV 176
G++L+ E+F+DL I+LGCDYC+SI+GIGP A++LIKEH S+EKI+E I++ K+ V
Sbjct: 259 GLDLTLEQFVDLGIMLGCDYCESIKGIGPVTALKLIKEHGSLEKIIEYIESGAANAKWKV 318
Query: 177 PEGWLYKEARELFRHPEVADPETI 200
PE W Y++ARELF P+V D + +
Sbjct: 319 PENWAYQDARELFLTPDVVDADEL 342
Score = 126 bits (317), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 63/113 (55%), Positives = 82/113 (72%), Gaps = 8/113 (7%)
Query: 305 LVADVAPSSIRE-------SRKICIDASMSLYQFLIAVRS-EGNQLMSVDGEPTSHLMGT 356
++ D P +IR RK+ IDASMSLYQFLIAVR +G QL S DGE TSHLMG
Sbjct: 55 IIQDNVPQAIRSREMRQFFGRKVAIDASMSLYQFLIAVRQQDGVQLASADGETTSHLMGV 114
Query: 357 FYRTIRLVEHGLKPIYVFDGKPPTLKSGELNKRMEKREDAQKALAKAQEQGKL 409
FYRT+R+V++GLKP YVFDG+PP LKS EL+KR E+R++ ++ L + EQ ++
Sbjct: 115 FYRTLRMVDNGLKPCYVFDGRPPELKSHELDKRSERRKETERKLEELTEQAEI 167
Score = 100 bits (249), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 71/203 (34%), Positives = 103/203 (50%), Gaps = 39/203 (19%)
Query: 114 HLEKVLEGMELSHEEFIDLCILLGCDYCDSIRGIGPKRA----IELIKEHRSIEKILENI 169
H ++++ + +EE L L+G Y D+ P A EL K+ + E++
Sbjct: 170 HERRLVKVEKWHNEEAKKLLGLMGIPYVDA-----PSEAEAQCAELAKKGKVFAAASEDM 224
Query: 170 DTKKYTVPEGWLYKEARELFRHPEVADP--ETIEFIDL-CILLGCDYCDSIRGIGPKRAI 226
DT Y P L RH ++ E I ID +L G D
Sbjct: 225 DTLCYRTPY---------LLRHLTFSEARKEPIHEIDTELVLQGLDLT------------ 263
Query: 227 ELLYSFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDT----KKYTVPEG 282
L F+DL I+LGCDYC+SI+GIGP A++LIKEH S+EKI+E I++ K+ VPE
Sbjct: 264 --LEQFVDLGIMLGCDYCESIKGIGPVTALKLIKEHGSLEKIIEYIESGAANAKWKVPEN 321
Query: 283 WLYKEARELFRHPEIADPETIEL 305
W Y++ARELF P++ D + + L
Sbjct: 322 WAYQDARELFLTPDVVDADELTL 344
Score = 72.8 bits (177), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 32/58 (55%), Positives = 42/58 (72%)
Query: 1 MTLKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSSTTQGRLDSFFTIRREEK 58
+TLKW DP ED L++Y+C +K F EDRIR+G +KL K S QGRLDSFF ++ + K
Sbjct: 342 LTLKWEDPKEDELIEYMCKEKGFNEDRIRSGIQKLRKGLKSGVQGRLDSFFKVKPKSK 399
Score = 68.9 bits (167), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 30/56 (53%), Positives = 40/56 (71%)
Query: 409 LKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSTTTQGRLDSFFTIRREEK 464
LKW DP ED L++Y+C +K F EDRIR+G +KL K + QGRLDSFF ++ + K
Sbjct: 344 LKWEDPKEDELIEYMCKEKGFNEDRIRSGIQKLRKGLKSGVQGRLDSFFKVKPKSK 399
>gi|212544870|ref|XP_002152589.1| Flap endonuclease Rad27, putative [Talaromyces marneffei ATCC
18224]
gi|210065558|gb|EEA19652.1| Flap endonuclease Rad27, putative [Talaromyces marneffei ATCC
18224]
Length = 411
Score = 172 bits (435), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 80/137 (58%), Positives = 104/137 (75%), Gaps = 3/137 (2%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVLE 120
AP EAEAQCA + +AGKVYA A+EDMD L F + ILLRH+TFSE RK P+ E HL+K LE
Sbjct: 171 APTEAEAQCAVLARAGKVYAAASEDMDTLCFEAPILLRHLTFSEQRKEPILEIHLDKALE 230
Query: 121 GMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDT---KKYTVP 177
G+ + +FIDLCILLGCDY + I +GP A++LI+EH S+EK++E I+ KKY +P
Sbjct: 231 GLGMDMAQFIDLCILLGCDYLEPIPKVGPNTALKLIREHGSLEKVVEAIENDPKKKYVIP 290
Query: 178 EGWLYKEARELFRHPEV 194
+ W Y+EARELF +P+V
Sbjct: 291 DDWPYQEARELFFNPDV 307
Score = 115 bits (289), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 59/129 (45%), Positives = 85/129 (65%), Gaps = 16/129 (12%)
Query: 295 PEIAD-PETIELVADVAPSSIRES-------RKICI--------DASMSLYQFLIAVRSE 338
PE+ P+ +++++ AP +++ RK+ I SMS+Y FLIAVRS+
Sbjct: 6 PELTTQPDLYQVISENAPDAVKTGEIKNHFGRKVAIVRINIAEYRISMSIYSFLIAVRSD 65
Query: 339 GNQLMSVDGEPTSHLMGTFYRTIRLVEHGLKPIYVFDGKPPTLKSGELNKRMEKREDAQK 398
G QLMS GE TSHLMG FYRT+R+V++G+KP+YVFDG PP +K GEL KR ++ +A +
Sbjct: 66 GQQLMSEAGETTSHLMGMFYRTLRIVDNGIKPLYVFDGAPPKMKGGELAKRSARKREAHE 125
Query: 399 ALAKAQEQG 407
A +A+E G
Sbjct: 126 AHEEAKETG 134
Score = 87.8 bits (216), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 38/72 (52%), Positives = 54/72 (75%), Gaps = 3/72 (4%)
Query: 229 LYSFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDT---KKYTVPEGWLY 285
+ FIDLCILLGCDY + I +GP A++LI+EH S+EK++E I+ KKY +P+ W Y
Sbjct: 236 MAQFIDLCILLGCDYLEPIPKVGPNTALKLIREHGSLEKVVEAIENDPKKKYVIPDDWPY 295
Query: 286 KEARELFRHPEI 297
+EARELF +P++
Sbjct: 296 QEARELFFNPDV 307
Score = 66.6 bits (161), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 39/105 (37%), Positives = 54/105 (51%), Gaps = 11/105 (10%)
Query: 355 GTFYRTIRLVEHGLKPIYVFDGKPPTLKSGEL--NKRMEKREDAQKALAKAQEQGKLKWS 412
G+ + + +E+ K YV P ++ EL N + K +D Q KW
Sbjct: 270 GSLEKVVEAIENDPKKKYVIPDDWPYQEARELFFNPDVRKADDPQ---------CDFKWE 320
Query: 413 DPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSTTTQGRLDSFF 457
PD +GLVK+L DK F+EDR+RNGA +L K T Q RL+ FF
Sbjct: 321 SPDVEGLVKFLVTDKGFSEDRVRNGAARLAKNLKTAQQSRLEGFF 365
Score = 62.8 bits (151), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 26/49 (53%), Positives = 33/49 (67%)
Query: 3 LKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSSTTQGRLDSFF 51
KW PD +GLVK+L DK F+EDR+RNGA +L K + Q RL+ FF
Sbjct: 317 FKWESPDVEGLVKFLVTDKGFSEDRVRNGAARLAKNLKTAQQSRLEGFF 365
>gi|343471550|emb|CCD16055.1| unnamed protein product [Trypanosoma congolense IL3000]
Length = 492
Score = 172 bits (435), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 80/143 (55%), Positives = 103/143 (72%)
Query: 60 KAPCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVL 119
+AP EAEAQCA +V+ K +A TEDMDAL FG+ ++LRH+T+ EA+K P+ E+HLE +L
Sbjct: 198 QAPSEAEAQCAELVRKDKAWAVGTEDMDALAFGARVMLRHLTYGEAKKRPIAEYHLEDIL 257
Query: 120 EGMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEG 179
E ++ E+FIDLCILLGCDY I GIGP +A E IK++ S+E LE++D KY VPEG
Sbjct: 258 ELAGMTMEQFIDLCILLGCDYVPKIPGIGPHKAWEGIKKYGSMEAFLESLDGTKYVVPEG 317
Query: 180 WLYKEARELFRHPEVADPETIEF 202
+ Y EAR F HPEV E IE
Sbjct: 318 FNYVEARNFFLHPEVTPGEEIEI 340
Score = 107 bits (266), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 55/115 (47%), Positives = 82/115 (71%), Gaps = 11/115 (9%)
Query: 304 ELVADVAPSSIRE-------SRKICIDASMSLYQFLIAVRS--EGN--QLMSVDGEPTSH 352
+L+ D AP +I+E R+I IDASM++YQF+IA++ EG +L + GE TSH
Sbjct: 48 KLLYDRAPGAIKEKELKCYFGRRIAIDASMAVYQFVIAMKGFQEGQSVELTNDAGEVTSH 107
Query: 353 LMGTFYRTIRLVEHGLKPIYVFDGKPPTLKSGELNKRMEKREDAQKALAKAQEQG 407
L G F+RT+R+++ GL+PIYVFDGKPP+LK+ EL+ R ++ E+A+ KA+E+G
Sbjct: 108 LNGIFFRTLRMIDEGLRPIYVFDGKPPSLKNSELDSRRQRAEEAKHEYEKAKEEG 162
Score = 92.4 bits (228), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 43/74 (58%), Positives = 52/74 (70%)
Query: 232 FIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGWLYKEAREL 291
FIDLCILLGCDY I GIGP +A E IK++ S+E LE++D KY VPEG+ Y EAR
Sbjct: 267 FIDLCILLGCDYVPKIPGIGPHKAWEGIKKYGSMEAFLESLDGTKYVVPEGFNYVEARNF 326
Query: 292 FRHPEIADPETIEL 305
F HPE+ E IE+
Sbjct: 327 FLHPEVTPGEEIEI 340
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/57 (45%), Positives = 41/57 (71%)
Query: 405 EQGKLKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSTTTQGRLDSFFTIRR 461
E+ ++++ +PDE+GLVK+L +K F +DR+ G ++L A + TQGRLD FFTI +
Sbjct: 336 EEIEIQFREPDEEGLVKFLVQEKLFNKDRVLKGIQRLRDALAKKTQGRLDQFFTITK 392
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 25/53 (47%), Positives = 38/53 (71%)
Query: 3 LKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSSTTQGRLDSFFTIRR 55
+++ +PDE+GLVK+L +K F +DR+ G ++L A + TQGRLD FFTI +
Sbjct: 340 IQFREPDEEGLVKFLVQEKLFNKDRVLKGIQRLRDALAKKTQGRLDQFFTITK 392
>gi|357132761|ref|XP_003567997.1| PREDICTED: flap endonuclease 1-A-like [Brachypodium distachyon]
Length = 380
Score = 171 bits (434), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 78/135 (57%), Positives = 102/135 (75%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVLE 120
APCEAEAQCAA+ KVYA A+EDMD+LTFG+ +RH+ +RK+P+ EF + K+LE
Sbjct: 156 APCEAEAQCAALCIKDKVYAVASEDMDSLTFGAPRFVRHLMDPSSRKIPIMEFEVAKILE 215
Query: 121 GMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGW 180
+E + ++FIDLCIL GCDYCDSI+GIG A++LI++H SIE ILENI+ KY +PE W
Sbjct: 216 ELEFTMDQFIDLCILCGCDYCDSIKGIGGLTALKLIRQHGSIEGILENINKDKYQIPEDW 275
Query: 181 LYKEARELFRHPEVA 195
Y+EAR LF+ P V
Sbjct: 276 PYEEARRLFKEPNVT 290
Score = 115 bits (288), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 60/112 (53%), Positives = 77/112 (68%), Gaps = 8/112 (7%)
Query: 304 ELVADVAPSSIRE-------SRKICIDASMSLYQFLIAVRSEGNQLMSVD-GEPTSHLMG 355
+L+AD AP +++E R+I +DASMS+YQFLI V G + ++ + GE TSHL G
Sbjct: 8 KLLADNAPKAMKEQKFESYFGRRIAVDASMSIYQFLIVVGRTGMETLTNEAGEVTSHLQG 67
Query: 356 TFYRTIRLVEHGLKPIYVFDGKPPTLKSGELNKRMEKREDAQKALAKAQEQG 407
F RTIRL+E G+KP+YVFDGKPP +K EL KR KREDA + L KA E G
Sbjct: 68 MFNRTIRLLEAGIKPVYVFDGKPPDMKKQELAKRYAKREDATEELTKAVETG 119
Score = 96.7 bits (239), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 42/67 (62%), Positives = 52/67 (77%)
Query: 232 FIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGWLYKEAREL 291
FIDLCIL GCDYCDSI+GIG A++LI++H SIE ILENI+ KY +PE W Y+EAR L
Sbjct: 224 FIDLCILCGCDYCDSIKGIGGLTALKLIRQHGSIEGILENINKDKYQIPEDWPYEEARRL 283
Query: 292 FRHPEIA 298
F+ P +
Sbjct: 284 FKEPNVT 290
Score = 60.1 bits (144), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 47/83 (56%), Gaps = 8/83 (9%)
Query: 3 LKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSSTTQGRLDSFF--------TIR 54
LKW+ PDE+GLV +L + F +DR+ +K+ A++ ++QGRL+SFF ++
Sbjct: 296 LKWTAPDEEGLVNFLVKENGFNQDRVTKAIEKIKSAKNKSSQGRLESFFKPTVSTSVPLK 355
Query: 55 REEKRKAPCEAEAQCAAMVKAGK 77
R+E + P A A A G+
Sbjct: 356 RKETSEKPTNAAASKKAKSTRGR 378
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 22/49 (44%), Positives = 35/49 (71%)
Query: 409 LKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSTTTQGRLDSFF 457
LKW+ PDE+GLV +L + F +DR+ +K+ A++ ++QGRL+SFF
Sbjct: 296 LKWTAPDEEGLVNFLVKENGFNQDRVTKAIEKIKSAKNKSSQGRLESFF 344
>gi|68477053|ref|XP_717504.1| hypothetical protein CaO19.8182 [Candida albicans SC5314]
gi|68477234|ref|XP_717410.1| hypothetical protein CaO19.547 [Candida albicans SC5314]
gi|74586103|sp|Q5A6K8.1|FEN1_CANAL RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|46439119|gb|EAK98441.1| hypothetical protein CaO19.547 [Candida albicans SC5314]
gi|46439217|gb|EAK98538.1| hypothetical protein CaO19.8182 [Candida albicans SC5314]
Length = 372
Score = 171 bits (434), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 79/144 (54%), Positives = 105/144 (72%), Gaps = 2/144 (1%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVLE 120
APCEAEAQCA + + GKVYA A+EDMD L + LLRH+TFSEARK+P+ + + +
Sbjct: 156 APCEAEAQCAELARGGKVYAAASEDMDTLCYEPPFLLRHLTFSEARKMPIDQIEYKDAIA 215
Query: 121 GMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENI--DTKKYTVPE 178
G++++ E+FIDLCILLGCDYC+SI+GIG A +LIKEH S++ I+E I + KYT+PE
Sbjct: 216 GLDMTKEQFIDLCILLGCDYCESIKGIGQATAFKLIKEHGSLDNIVEWIKNNKTKYTLPE 275
Query: 179 GWLYKEARELFRHPEVADPETIEF 202
W Y EAR+LF +PEV + I
Sbjct: 276 NWPYDEARQLFMNPEVTNASEINL 299
Score = 123 bits (309), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 62/114 (54%), Positives = 82/114 (71%), Gaps = 8/114 (7%)
Query: 304 ELVADVAPSSIRE-------SRKICIDASMSLYQFLIAVR-SEGNQLMSVDGEPTSHLMG 355
+L+ + +PS+ +E RK+ IDASM LYQFLIAVR S+G QL + DGE TSHL G
Sbjct: 8 QLIKEHSPSAYKEFQLKNLFGRKVAIDASMCLYQFLIAVRQSDGQQLTNEDGETTSHLSG 67
Query: 356 TFYRTIRLVEHGLKPIYVFDGKPPTLKSGELNKRMEKREDAQKALAKAQEQGKL 409
FYRTI++VE+ +KP+YVFDGKPP LK GEL KR+ +RE+AQK ++G +
Sbjct: 68 MFYRTIKMVENNIKPVYVFDGKPPVLKGGELEKRLLRREEAQKQKTALGDEGTV 121
Score = 95.5 bits (236), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 48/96 (50%), Positives = 64/96 (66%), Gaps = 7/96 (7%)
Query: 212 DYCDSIRGIGPKRAIELLYSFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILEN 271
+Y D+I G+ + FIDLCILLGCDYC+SI+GIG A +LIKEH S++ I+E
Sbjct: 209 EYKDAIAGLDMTKE-----QFIDLCILLGCDYCESIKGIGQATAFKLIKEHGSLDNIVEW 263
Query: 272 I--DTKKYTVPEGWLYKEARELFRHPEIADPETIEL 305
I + KYT+PE W Y EAR+LF +PE+ + I L
Sbjct: 264 IKNNKTKYTLPENWPYDEARQLFMNPEVTNASEINL 299
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 31/63 (49%), Positives = 44/63 (69%), Gaps = 2/63 (3%)
Query: 1 MTLKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSSTTQGRLDSFFTIRR--EEK 58
+ LKW +PD DGL++++ K F+EDRIR+GA+KL K QGRLD FF + + ++K
Sbjct: 297 INLKWKEPDVDGLIEFMVKQKGFSEDRIRSGAEKLKKGLKGGVQGRLDGFFKVVKTDDKK 356
Query: 59 RKA 61
RKA
Sbjct: 357 RKA 359
Score = 66.6 bits (161), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 28/61 (45%), Positives = 41/61 (67%)
Query: 409 LKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSTTTQGRLDSFFTIRREEKRKSR 468
LKW +PD DGL++++ K F+EDRIR+GA+KL K QGRLD FF + + + +K +
Sbjct: 299 LKWKEPDVDGLIEFMVKQKGFSEDRIRSGAEKLKKGLKGGVQGRLDGFFKVVKTDDKKRK 358
Query: 469 C 469
Sbjct: 359 A 359
>gi|343427426|emb|CBQ70953.1| probable DNA repair endonuclease rad2 [Sporisorium reilianum SRZ2]
Length = 374
Score = 171 bits (434), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 76/137 (55%), Positives = 106/137 (77%), Gaps = 3/137 (2%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVLE 120
AP EAEAQCA + +AGKVYA +EDMD LTFG+ ILL+H+T SE +KLPV + L K LE
Sbjct: 156 APSEAEAQCAELARAGKVYAAGSEDMDTLTFGTPILLKHLTASEQKKLPVHQVDLPKALE 215
Query: 121 GMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENI---DTKKYTVP 177
G+++S +FIDLCILLGCDY D I+GIGPK A++LI+EH+++E ++E++ K +P
Sbjct: 216 GLQMSMPQFIDLCILLGCDYLDPIKGIGPKTALKLIREHKTLENVVEHLKEEGKKSVQIP 275
Query: 178 EGWLYKEARELFRHPEV 194
E W ++EAR++F +P+V
Sbjct: 276 EHWPFQEARKIFENPDV 292
Score = 111 bits (278), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 54/93 (58%), Positives = 70/93 (75%), Gaps = 8/93 (8%)
Query: 305 LVADVAPSSIRE-------SRKICIDASMSLYQFLIAVR-SEGNQLMSVDGEPTSHLMGT 356
L++D AP +I+E RK+ IDASMSLYQFLIAVR ++G QLM+ GE TSHL+G
Sbjct: 9 LISDEAPGAIKEMEIKTYFGRKVAIDASMSLYQFLIAVRQNDGQQLMTESGETTSHLLGF 68
Query: 357 FYRTIRLVEHGLKPIYVFDGKPPTLKSGELNKR 389
FYRT+R++++G+KP+YVFDG PP LK L KR
Sbjct: 69 FYRTLRMIDYGIKPMYVFDGTPPDLKKELLQKR 101
Score = 87.4 bits (215), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 41/99 (41%), Positives = 66/99 (66%), Gaps = 4/99 (4%)
Query: 232 FIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENI---DTKKYTVPEGWLYKEA 288
FIDLCILLGCDY D I+GIGPK A++LI+EH+++E ++E++ K +PE W ++EA
Sbjct: 224 FIDLCILLGCDYLDPIKGIGPKTALKLIREHKTLENVVEHLKEEGKKSVQIPEHWPFQEA 283
Query: 289 RELFRHPEIADPETIELVADVAPSSIRESRKICIDASMS 327
R++F +P++ + ++L + AP + +C D S
Sbjct: 284 RKIFENPDVQKGKDLDLKWE-APDVEAMVKFLCQDKGFS 321
Score = 68.2 bits (165), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 33/64 (51%), Positives = 42/64 (65%), Gaps = 3/64 (4%)
Query: 1 MTLKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSSTTQGRLDSFFTIR---REE 57
+ LKW PD + +VK+LC DK F+EDR+R G KL K+ S QGRLD FFT++
Sbjct: 298 LDLKWEAPDVEAMVKFLCQDKGFSEDRVRKGCDKLQKSLSQKQQGRLDGFFTVKPGSAPP 357
Query: 58 KRKA 61
KRKA
Sbjct: 358 KRKA 361
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 29/52 (55%), Positives = 37/52 (71%)
Query: 409 LKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSTTTQGRLDSFFTIR 460
LKW PD + +VK+LC DK F+EDR+R G KL K+ S QGRLD FFT++
Sbjct: 300 LKWEAPDVEAMVKFLCQDKGFSEDRVRKGCDKLQKSLSQKQQGRLDGFFTVK 351
>gi|296411549|ref|XP_002835493.1| hypothetical protein [Tuber melanosporum Mel28]
gi|295629277|emb|CAZ79650.1| unnamed protein product [Tuber melanosporum]
Length = 481
Score = 171 bits (434), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 77/143 (53%), Positives = 110/143 (76%), Gaps = 1/143 (0%)
Query: 60 KAPCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVL 119
+APCEAEAQCAA+ KAGKVYA A++DMD L F + ILL+ + SE +K PVQE +L++ +
Sbjct: 249 EAPCEAEAQCAALAKAGKVYAAASDDMDTLCFETPILLKKLMLSEMKKEPVQEIYLDRAM 308
Query: 120 EGMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEG 179
+ + + ++FIDLCILLGCDYCD+I +GP A++LI+EH+SIE +L ++ KY VP+
Sbjct: 309 QELGFTRDQFIDLCILLGCDYCDTIPKVGPTTALKLIREHKSIENVLSHLG-PKYAVPKK 367
Query: 180 WLYKEARELFRHPEVADPETIEF 202
W Y++ARELF++P + DP+ EF
Sbjct: 368 WPYQDARELFKNPLITDPDECEF 390
Score = 120 bits (301), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 55/73 (75%), Positives = 63/73 (86%)
Query: 317 SRKICIDASMSLYQFLIAVRSEGNQLMSVDGEPTSHLMGTFYRTIRLVEHGLKPIYVFDG 376
RKI IDASMS+Y FLIAVRSEG QL S GE TSHLMG FYRT+R+V++G+KP+YVFDG
Sbjct: 123 GRKIAIDASMSIYSFLIAVRSEGQQLTSETGETTSHLMGLFYRTLRMVDNGIKPLYVFDG 182
Query: 377 KPPTLKSGELNKR 389
+PPTLKSGEL KR
Sbjct: 183 RPPTLKSGELAKR 195
Score = 96.3 bits (238), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 42/74 (56%), Positives = 57/74 (77%), Gaps = 1/74 (1%)
Query: 232 FIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGWLYKEAREL 291
FIDLCILLGCDYCD+I +GP A++LI+EH+SIE +L ++ KY VP+ W Y++AREL
Sbjct: 318 FIDLCILLGCDYCDTIPKVGPTTALKLIREHKSIENVLSHLG-PKYAVPKKWPYQDAREL 376
Query: 292 FRHPEIADPETIEL 305
F++P I DP+ E
Sbjct: 377 FKNPLITDPDECEF 390
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 36/100 (36%), Positives = 48/100 (48%), Gaps = 9/100 (9%)
Query: 358 YRTIRLVEHGLKPIYVFDGKPPTLKSGELNKRMEKREDAQKALAKAQEQGKLKWSDPDED 417
+++I V L P Y K P + EL K L ++ + KW PD D
Sbjct: 348 HKSIENVLSHLGPKYAVPKKWPYQDARELFK---------NPLITDPDECEFKWEAPDID 398
Query: 418 GLVKYLCGDKNFAEDRIRNGAKKLLKARSTTTQGRLDSFF 457
LV +L G+K F EDR+R GA KL K TQ R++ FF
Sbjct: 399 KLVAFLVGEKGFNEDRVRAGAVKLSKNLKGNTQARVNDFF 438
Score = 56.2 bits (134), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 25/49 (51%), Positives = 30/49 (61%)
Query: 3 LKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSSTTQGRLDSFF 51
KW PD D LV +L G+K F EDR+R GA KL K TQ R++ FF
Sbjct: 390 FKWEAPDIDKLVAFLVGEKGFNEDRVRAGAVKLSKNLKGNTQARVNDFF 438
>gi|207343574|gb|EDZ71001.1| YKL113Cp-like protein [Saccharomyces cerevisiae AWRI1631]
Length = 261
Score = 171 bits (434), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 83/147 (56%), Positives = 106/147 (72%), Gaps = 5/147 (3%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVLE 120
AP EAEAQCA + K GKVYA A+EDMD L + + LLRH+TFSEA+K P+ E E VL
Sbjct: 32 APTEAEAQCAELAKKGKVYAAASEDMDTLCYRTPFLLRHLTFSEAKKEPIHEIDTELVLR 91
Query: 121 GMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDT-----KKYT 175
G++L+ E+F+DLCI+LGCDYC+SIRG+GP A++LIK H SIEKI+E I++ K+
Sbjct: 92 GLDLTIEQFVDLCIMLGCDYCESIRGVGPVTALKLIKTHGSIEKIVEFIESGESNNTKWK 151
Query: 176 VPEGWLYKEARELFRHPEVADPETIEF 202
+PE W YK+AR LF PEV D I
Sbjct: 152 IPEDWPYKQARMLFLDPEVIDGNEINL 178
Score = 95.9 bits (237), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 72/192 (37%), Positives = 96/192 (50%), Gaps = 40/192 (20%)
Query: 126 HEEFIDLCILLGCDYCDSIRGIGPKRA----IELIKEHRSIEKILENIDTKKYTVPEGWL 181
+EE L L+G Y I P A EL K+ + E++DT Y P
Sbjct: 15 NEEAQKLLGLMGIPYI-----IAPTEAEAQCAELAKKGKVYAAASEDMDTLCYRTPF--- 66
Query: 182 YKEARELFRHPEV--ADPETIEFIDLCILLGCDYCDSIRGIGPKRAIEL-LYSFIDLCIL 238
L RH A E I ID ++L R ++L + F+DLCI+
Sbjct: 67 ------LLRHLTFSEAKKEPIHEIDTELVL--------------RGLDLTIEQFVDLCIM 106
Query: 239 LGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDT-----KKYTVPEGWLYKEARELFR 293
LGCDYC+SIRG+GP A++LIK H SIEKI+E I++ K+ +PE W YK+AR LF
Sbjct: 107 LGCDYCESIRGVGPVTALKLIKTHGSIEKIVEFIESGESNNTKWKIPEDWPYKQARMLFL 166
Query: 294 HPEIADPETIEL 305
PE+ D I L
Sbjct: 167 DPEVIDGNEINL 178
Score = 62.4 bits (150), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 26/53 (49%), Positives = 36/53 (67%)
Query: 1 MTLKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSSTTQGRLDSFFTI 53
+ LKWS P E L++YLC DK F+E+R+++G +L K S QGRLD FF +
Sbjct: 176 INLKWSPPKEKELIEYLCDDKKFSEERVKSGISRLKKGLKSGIQGRLDGFFQV 228
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/51 (49%), Positives = 35/51 (68%)
Query: 409 LKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSTTTQGRLDSFFTI 459
LKWS P E L++YLC DK F+E+R+++G +L K + QGRLD FF +
Sbjct: 178 LKWSPPKEKELIEYLCDDKKFSEERVKSGISRLKKGLKSGIQGRLDGFFQV 228
>gi|409042314|gb|EKM51798.1| hypothetical protein PHACADRAFT_102664 [Phanerochaete carnosa
HHB-10118-sp]
Length = 384
Score = 171 bits (434), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 78/144 (54%), Positives = 108/144 (75%), Gaps = 2/144 (1%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVLE 120
AP EAEAQCA + + GKVYA +EDMD LTF S ILLRH+TFSEARK P+ E +LEKVLE
Sbjct: 156 APSEAEAQCAELARGGKVYAAGSEDMDTLTFNSAILLRHLTFSEARKAPISEINLEKVLE 215
Query: 121 GMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTK--KYTVPE 178
G+E+S +FIDLCILLGCDY + I+G+GPK A++LI+E+ + +++E++ K +VP+
Sbjct: 216 GLEMSMSQFIDLCILLGCDYLEPIKGVGPKSALKLIREYGGLAEVVEHLREKCGGISVPD 275
Query: 179 GWLYKEARELFRHPEVADPETIEF 202
W ++EA++LF P+V +E
Sbjct: 276 EWPWEEAKKLFEKPDVTPASEVEI 299
Score = 116 bits (291), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 56/94 (59%), Positives = 74/94 (78%), Gaps = 8/94 (8%)
Query: 305 LVADVAPSSIRE-------SRKICIDASMSLYQFLIAVRSEGNQLMSVD-GEPTSHLMGT 356
++A+ AP++I+E RK+ IDASMS+YQFLIAVR + +L++ D GE TSHLMG
Sbjct: 9 IIAEHAPNAIKEHEIKTLFGRKVAIDASMSIYQFLIAVRQKDGELLTNDAGETTSHLMGF 68
Query: 357 FYRTIRLVEHGLKPIYVFDGKPPTLKSGELNKRM 390
FYRTIR+V++G+KP+YVFDGKPP LKSG L+KR
Sbjct: 69 FYRTIRMVDNGIKPLYVFDGKPPELKSGVLSKRF 102
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 32/79 (40%), Positives = 56/79 (70%), Gaps = 2/79 (2%)
Query: 229 LYSFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTK--KYTVPEGWLYK 286
+ FIDLCILLGCDY + I+G+GPK A++LI+E+ + +++E++ K +VP+ W ++
Sbjct: 221 MSQFIDLCILLGCDYLEPIKGVGPKSALKLIREYGGLAEVVEHLREKCGGISVPDEWPWE 280
Query: 287 EARELFRHPEIADPETIEL 305
EA++LF P++ +E+
Sbjct: 281 EAKKLFEKPDVTPASEVEI 299
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 25/49 (51%), Positives = 34/49 (69%)
Query: 3 LKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSSTTQGRLDSFF 51
++W PD +GLV +L +K F EDR+R GA+KL K ++ QGRLD FF
Sbjct: 299 IEWKGPDVEGLVDFLVKEKGFNEDRVRKGAEKLTKGVAAKQQGRLDGFF 347
Score = 59.3 bits (142), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 25/50 (50%), Positives = 34/50 (68%)
Query: 408 KLKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSTTTQGRLDSFF 457
+++W PD +GLV +L +K F EDR+R GA+KL K + QGRLD FF
Sbjct: 298 EIEWKGPDVEGLVDFLVKEKGFNEDRVRKGAEKLTKGVAAKQQGRLDGFF 347
>gi|317374921|sp|B6QT52.2|FEN1_PENMQ RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
Length = 395
Score = 171 bits (434), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 80/137 (58%), Positives = 104/137 (75%), Gaps = 3/137 (2%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVLE 120
AP EAEAQCA + +AGKVYA A+EDMD L F + ILLRH+TFSE RK P+ E HL+K LE
Sbjct: 155 APTEAEAQCAVLARAGKVYAAASEDMDTLCFEAPILLRHLTFSEQRKEPILEIHLDKALE 214
Query: 121 GMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDT---KKYTVP 177
G+ + +FIDLCILLGCDY + I +GP A++LI+EH S+EK++E I+ KKY +P
Sbjct: 215 GLGMDMAQFIDLCILLGCDYLEPIPKVGPNTALKLIREHGSLEKVVEAIENDPKKKYVIP 274
Query: 178 EGWLYKEARELFRHPEV 194
+ W Y+EARELF +P+V
Sbjct: 275 DDWPYQEARELFFNPDV 291
Score = 126 bits (316), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 58/111 (52%), Positives = 82/111 (73%), Gaps = 7/111 (6%)
Query: 304 ELVADVAPSSIRES-------RKICIDASMSLYQFLIAVRSEGNQLMSVDGEPTSHLMGT 356
+++++ AP +++ RK+ IDASMS+Y FLIAVRS+G QLMS GE TSHLMG
Sbjct: 8 QVISENAPDAVKTGEIKNHFGRKVAIDASMSIYSFLIAVRSDGQQLMSEAGETTSHLMGM 67
Query: 357 FYRTIRLVEHGLKPIYVFDGKPPTLKSGELNKRMEKREDAQKALAKAQEQG 407
FYRT+R+V++G+KP+YVFDG PP +K GEL KR ++ +A +A +A+E G
Sbjct: 68 FYRTLRIVDNGIKPLYVFDGAPPKMKGGELAKRSARKREAHEAHEEAKETG 118
Score = 87.8 bits (216), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 38/72 (52%), Positives = 54/72 (75%), Gaps = 3/72 (4%)
Query: 229 LYSFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDT---KKYTVPEGWLY 285
+ FIDLCILLGCDY + I +GP A++LI+EH S+EK++E I+ KKY +P+ W Y
Sbjct: 220 MAQFIDLCILLGCDYLEPIPKVGPNTALKLIREHGSLEKVVEAIENDPKKKYVIPDDWPY 279
Query: 286 KEARELFRHPEI 297
+EARELF +P++
Sbjct: 280 QEARELFFNPDV 291
Score = 66.6 bits (161), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 39/105 (37%), Positives = 54/105 (51%), Gaps = 11/105 (10%)
Query: 355 GTFYRTIRLVEHGLKPIYVFDGKPPTLKSGEL--NKRMEKREDAQKALAKAQEQGKLKWS 412
G+ + + +E+ K YV P ++ EL N + K +D Q KW
Sbjct: 254 GSLEKVVEAIENDPKKKYVIPDDWPYQEARELFFNPDVRKADDPQ---------CDFKWE 304
Query: 413 DPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSTTTQGRLDSFF 457
PD +GLVK+L DK F+EDR+RNGA +L K T Q RL+ FF
Sbjct: 305 SPDVEGLVKFLVTDKGFSEDRVRNGAARLAKNLKTAQQSRLEGFF 349
Score = 62.4 bits (150), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 26/49 (53%), Positives = 33/49 (67%)
Query: 3 LKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSSTTQGRLDSFF 51
KW PD +GLVK+L DK F+EDR+RNGA +L K + Q RL+ FF
Sbjct: 301 FKWESPDVEGLVKFLVTDKGFSEDRVRNGAARLAKNLKTAQQSRLEGFF 349
>gi|317374863|sp|B8AW67.1|FEN11_ORYSI RecName: Full=Flap endonuclease 1-A; Short=FEN-1-A; AltName:
Full=Flap structure-specific endonuclease 1-A
gi|218197185|gb|EEC79612.1| hypothetical protein OsI_20807 [Oryza sativa Indica Group]
Length = 380
Score = 171 bits (434), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 78/135 (57%), Positives = 103/135 (76%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVLE 120
APCEAEA+CAA+ VYA A+EDMD+LTFG+ LRH+ ++K+PV EF + KVLE
Sbjct: 156 APCEAEAECAALCINDMVYAVASEDMDSLTFGAPRFLRHLMDPSSKKIPVMEFEVAKVLE 215
Query: 121 GMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGW 180
+EL+ ++FIDLCIL GCDYCDSI+GIG + A++LI++H SIE ILENI+ +Y +PE W
Sbjct: 216 ELELTMDQFIDLCILSGCDYCDSIKGIGGQTALKLIRQHGSIESILENINKDRYQIPEDW 275
Query: 181 LYKEARELFRHPEVA 195
Y+EAR LF+ P V
Sbjct: 276 PYQEARRLFKEPNVT 290
Score = 117 bits (294), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 64/127 (50%), Positives = 84/127 (66%), Gaps = 15/127 (11%)
Query: 304 ELVADVAPSSIRE-------SRKICIDASMSLYQFLIAVRSEGNQLMSVD-GEPTSHLMG 355
+L+AD AP +++E R+I +DASMS+YQFLI V G + ++ + GE TSHL G
Sbjct: 8 KLLADNAPKAMKEQKFESYFGRRIAVDASMSIYQFLIVVGRTGMETLTNEAGEVTSHLQG 67
Query: 356 TFYRTIRLVEHGLKPIYVFDGKPPTLKSGELNKRMEKREDAQKALAKAQEQGKLKWSDPD 415
F RTIRL+E G+KP+YVFDGKPP LK EL KR KREDA K L +A E+G D
Sbjct: 68 MFNRTIRLLEAGIKPVYVFDGKPPDLKKQELAKRYSKREDATKELTEAVEEG-------D 120
Query: 416 EDGLVKY 422
+D + K+
Sbjct: 121 KDAIEKF 127
Score = 97.4 bits (241), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 41/67 (61%), Positives = 53/67 (79%)
Query: 232 FIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGWLYKEAREL 291
FIDLCIL GCDYCDSI+GIG + A++LI++H SIE ILENI+ +Y +PE W Y+EAR L
Sbjct: 224 FIDLCILSGCDYCDSIKGIGGQTALKLIRQHGSIESILENINKDRYQIPEDWPYQEARRL 283
Query: 292 FRHPEIA 298
F+ P +
Sbjct: 284 FKEPNVT 290
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 46/74 (62%), Gaps = 8/74 (10%)
Query: 3 LKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSSTTQGRLDSFF--------TIR 54
LKW+ PDE+GLV++L + F +DR+ +K+ A++ ++QGRL+SFF ++
Sbjct: 296 LKWNAPDEEGLVQFLVKENGFNQDRVTKAIEKIKFAKNKSSQGRLESFFKPVVSTSVPLK 355
Query: 55 REEKRKAPCEAEAQ 68
R++ + P +A A
Sbjct: 356 RKDTSEKPTKAVAN 369
Score = 55.5 bits (132), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 22/49 (44%), Positives = 36/49 (73%)
Query: 409 LKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSTTTQGRLDSFF 457
LKW+ PDE+GLV++L + F +DR+ +K+ A++ ++QGRL+SFF
Sbjct: 296 LKWNAPDEEGLVQFLVKENGFNQDRVTKAIEKIKFAKNKSSQGRLESFF 344
>gi|149390675|gb|ABR25355.1| endonuclease putative [Oryza sativa Indica Group]
Length = 262
Score = 171 bits (434), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 78/136 (57%), Positives = 104/136 (76%)
Query: 60 KAPCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVL 119
+APCEAEA+CAA+ VYA A+EDMD+LTFG+ LRH+ ++K+PV EF + KVL
Sbjct: 37 EAPCEAEAECAALCINDMVYAVASEDMDSLTFGAPRFLRHLMDPSSKKIPVMEFEVAKVL 96
Query: 120 EGMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEG 179
E +EL+ ++FIDLCIL GCDYCDSI+GIG + A++LI++H SIE ILENI+ +Y +PE
Sbjct: 97 EELELTMDQFIDLCILSGCDYCDSIKGIGGQTALKLIRQHGSIESILENINKDRYQIPED 156
Query: 180 WLYKEARELFRHPEVA 195
W Y+EAR LF+ P V
Sbjct: 157 WPYQEARRLFKEPNVT 172
Score = 97.1 bits (240), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 41/67 (61%), Positives = 53/67 (79%)
Query: 232 FIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGWLYKEAREL 291
FIDLCIL GCDYCDSI+GIG + A++LI++H SIE ILENI+ +Y +PE W Y+EAR L
Sbjct: 106 FIDLCILSGCDYCDSIKGIGGQTALKLIRQHGSIESILENINKDRYQIPEDWPYQEARRL 165
Query: 292 FRHPEIA 298
F+ P +
Sbjct: 166 FKEPNVT 172
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 46/74 (62%), Gaps = 8/74 (10%)
Query: 3 LKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSSTTQGRLDSFF--------TIR 54
LKW+ PDE+GLV++L + F +DR+ +K+ A++ ++QGRL+SFF ++
Sbjct: 178 LKWNAPDEEGLVQFLVKENGFNQDRVTKAIEKIKFAKNKSSQGRLESFFKPVVSTSVPLK 237
Query: 55 REEKRKAPCEAEAQ 68
R++ + P +A A
Sbjct: 238 RKDTSEKPTKAVAN 251
Score = 55.5 bits (132), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 22/50 (44%), Positives = 37/50 (74%)
Query: 408 KLKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSTTTQGRLDSFF 457
+LKW+ PDE+GLV++L + F +DR+ +K+ A++ ++QGRL+SFF
Sbjct: 177 ELKWNAPDEEGLVQFLVKENGFNQDRVTKAIEKIKFAKNKSSQGRLESFF 226
>gi|115465159|ref|NP_001056179.1| Os05g0540100 [Oryza sativa Japonica Group]
gi|62510701|sp|Q9SXQ6.1|FEN11_ORYSJ RecName: Full=Flap endonuclease 1-A; Short=FEN-1-A; AltName:
Full=Flap structure-specific endonuclease 1-A; AltName:
Full=OsFEN-1a
gi|4587225|dbj|BAA36171.1| FEN-1 [Oryza sativa Japonica Group]
gi|113579730|dbj|BAF18093.1| Os05g0540100 [Oryza sativa Japonica Group]
gi|222632398|gb|EEE64530.1| hypothetical protein OsJ_19381 [Oryza sativa Japonica Group]
Length = 380
Score = 171 bits (433), Expect = 8e-40, Method: Compositional matrix adjust.
Identities = 78/135 (57%), Positives = 103/135 (76%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVLE 120
APCEAEA+CAA+ VYA A+EDMD+LTFG+ LRH+ ++K+PV EF + KVLE
Sbjct: 156 APCEAEAECAALCINDMVYAVASEDMDSLTFGAPRFLRHLMDPSSKKIPVMEFEVAKVLE 215
Query: 121 GMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGW 180
+EL+ ++FIDLCIL GCDYCDSI+GIG + A++LI++H SIE ILENI+ +Y +PE W
Sbjct: 216 ELELTMDQFIDLCILSGCDYCDSIKGIGGQTALKLIRQHGSIESILENINKDRYQIPEDW 275
Query: 181 LYKEARELFRHPEVA 195
Y+EAR LF+ P V
Sbjct: 276 PYQEARRLFKEPNVT 290
Score = 117 bits (294), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 64/127 (50%), Positives = 84/127 (66%), Gaps = 15/127 (11%)
Query: 304 ELVADVAPSSIRE-------SRKICIDASMSLYQFLIAVRSEGNQLMSVD-GEPTSHLMG 355
+L+AD AP +++E R+I +DASMS+YQFLI V G + ++ + GE TSHL G
Sbjct: 8 KLLADNAPKAMKEQKFESYFGRRIAVDASMSIYQFLIVVGRTGMETLTNEAGEVTSHLQG 67
Query: 356 TFYRTIRLVEHGLKPIYVFDGKPPTLKSGELNKRMEKREDAQKALAKAQEQGKLKWSDPD 415
F RTIRL+E G+KP+YVFDGKPP LK EL KR KREDA K L +A E+G D
Sbjct: 68 MFNRTIRLLEAGIKPVYVFDGKPPDLKKQELAKRYSKREDATKELTEAVEEG-------D 120
Query: 416 EDGLVKY 422
+D + K+
Sbjct: 121 KDAIEKF 127
Score = 97.4 bits (241), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 41/67 (61%), Positives = 53/67 (79%)
Query: 232 FIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGWLYKEAREL 291
FIDLCIL GCDYCDSI+GIG + A++LI++H SIE ILENI+ +Y +PE W Y+EAR L
Sbjct: 224 FIDLCILSGCDYCDSIKGIGGQTALKLIRQHGSIESILENINKDRYQIPEDWPYQEARRL 283
Query: 292 FRHPEIA 298
F+ P +
Sbjct: 284 FKEPNVT 290
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 46/74 (62%), Gaps = 8/74 (10%)
Query: 3 LKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSSTTQGRLDSFF--------TIR 54
LKW+ PDE+GLV++L + F +DR+ +K+ A++ ++QGRL+SFF ++
Sbjct: 296 LKWNAPDEEGLVEFLVKENGFNQDRVTKAIEKIKFAKNKSSQGRLESFFKPVVSTSVPLK 355
Query: 55 REEKRKAPCEAEAQ 68
R++ + P +A A
Sbjct: 356 RKDTSEKPTKAVAN 369
Score = 55.5 bits (132), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 22/49 (44%), Positives = 36/49 (73%)
Query: 409 LKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSTTTQGRLDSFF 457
LKW+ PDE+GLV++L + F +DR+ +K+ A++ ++QGRL+SFF
Sbjct: 296 LKWNAPDEEGLVEFLVKENGFNQDRVTKAIEKIKFAKNKSSQGRLESFF 344
>gi|55733906|gb|AAV59413.1| putative flap endonuclease 1 [Oryza sativa Japonica Group]
Length = 380
Score = 171 bits (433), Expect = 9e-40, Method: Compositional matrix adjust.
Identities = 78/136 (57%), Positives = 104/136 (76%)
Query: 60 KAPCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVL 119
+APCEAEA+CAA+ VYA A+EDMD+LTFG+ LRH+ ++K+PV EF + KVL
Sbjct: 158 EAPCEAEAECAALCINDMVYAVASEDMDSLTFGAPRFLRHLMDPSSKKIPVMEFEVAKVL 217
Query: 120 EGMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEG 179
E +EL+ ++FIDLCIL GCDYCDSI+GIG + A++LI++H SIE ILENI+ +Y +PE
Sbjct: 218 EELELTMDQFIDLCILSGCDYCDSIKGIGGQTALKLIRQHGSIESILENINKDRYQIPED 277
Query: 180 WLYKEARELFRHPEVA 195
W Y+EAR LF+ P V
Sbjct: 278 WPYQEARRLFKEPNVT 293
Score = 113 bits (282), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 64/130 (49%), Positives = 85/130 (65%), Gaps = 18/130 (13%)
Query: 304 ELVADVAPSSIRE-------SRKICIDASMSLYQFLIAVRSEGNQLMSVD-GEPTSHLMG 355
+L+AD AP +++E R+I +DASMS+YQFLI V G + ++ + GE TSHL G
Sbjct: 8 KLLADNAPKAMKEQKFESYFGRRIAVDASMSIYQFLIVVGRTGMETLTNEAGEVTSHLQG 67
Query: 356 TFYRTIRLVEHGLKPIYVFDGKPPTLKSGELNKRME---KREDAQKALAKAQEQGKLKWS 412
F RTIRL+E G+KP+YVFDGKPP LK EL KR + KREDA K L +A E+G
Sbjct: 68 MFNRTIRLLEAGIKPVYVFDGKPPDLKKQELAKRHDMYSKREDATKELTEAVEEG----- 122
Query: 413 DPDEDGLVKY 422
D+D + K+
Sbjct: 123 --DKDAIEKF 130
Score = 97.4 bits (241), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 41/67 (61%), Positives = 53/67 (79%)
Query: 232 FIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGWLYKEAREL 291
FIDLCIL GCDYCDSI+GIG + A++LI++H SIE ILENI+ +Y +PE W Y+EAR L
Sbjct: 227 FIDLCILSGCDYCDSIKGIGGQTALKLIRQHGSIESILENINKDRYQIPEDWPYQEARRL 286
Query: 292 FRHPEIA 298
F+ P +
Sbjct: 287 FKEPNVT 293
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 45/74 (60%), Gaps = 11/74 (14%)
Query: 3 LKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSSTTQGRLDSFF--------TIR 54
LKW+ PDE+GLV++L + F +DR +K+ A++ ++QGRL+SFF ++
Sbjct: 299 LKWNAPDEEGLVEFLVKENGFNQDR---AIEKIKFAKNKSSQGRLESFFKPVVSTSVPLK 355
Query: 55 REEKRKAPCEAEAQ 68
R++ + P +A A
Sbjct: 356 RKDTSEKPTKAVAN 369
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 22/50 (44%), Positives = 36/50 (72%), Gaps = 3/50 (6%)
Query: 408 KLKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSTTTQGRLDSFF 457
+LKW+ PDE+GLV++L + F +DR +K+ A++ ++QGRL+SFF
Sbjct: 298 ELKWNAPDEEGLVEFLVKENGFNQDR---AIEKIKFAKNKSSQGRLESFF 344
>gi|365759754|gb|EHN01528.1| Rad27p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
Length = 380
Score = 171 bits (433), Expect = 9e-40, Method: Compositional matrix adjust.
Identities = 81/147 (55%), Positives = 108/147 (73%), Gaps = 5/147 (3%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVLE 120
AP EAEAQCA + K GKVYA A+EDMD L + + LLRH+TFSEA+K P+ E E VL
Sbjct: 153 APTEAEAQCAELAKKGKVYAAASEDMDTLCYRTPFLLRHLTFSEAKKEPIHEIDTELVLR 212
Query: 121 GMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTK-----KYT 175
G++L+ E+F+DLCI+LGCDYC+SIRG+GP A++L++ H SIEKI+E I+++ K+
Sbjct: 213 GLDLTIEQFVDLCIMLGCDYCESIRGVGPVTALKLMRTHGSIEKIIEFIESEESSNTKWK 272
Query: 176 VPEGWLYKEARELFRHPEVADPETIEF 202
+PE W YK+AR LF PEV D I+
Sbjct: 273 IPEDWPYKQARMLFLDPEVIDGNEIDL 299
Score = 124 bits (311), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 61/107 (57%), Positives = 81/107 (75%), Gaps = 8/107 (7%)
Query: 305 LVADVAPSSIRES-------RKICIDASMSLYQFLIAVRS-EGNQLMSVDGEPTSHLMGT 356
++++ PS+IR+S RK+ IDASMSLYQFLIAVR +G QL + GE TSHLMG
Sbjct: 9 IISEHVPSAIRKSDIKSFFGRKVAIDASMSLYQFLIAVRQQDGGQLANEAGETTSHLMGM 68
Query: 357 FYRTIRLVEHGLKPIYVFDGKPPTLKSGELNKRMEKREDAQKALAKA 403
FYRT+R++++G+KP YVFDGKPP +KS EL KR +RE+ +K LA+A
Sbjct: 69 FYRTLRMIDNGIKPCYVFDGKPPEMKSHELTKRSSRREETEKKLAEA 115
Score = 96.3 bits (238), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 70/192 (36%), Positives = 95/192 (49%), Gaps = 40/192 (20%)
Query: 126 HEEFIDLCILLGCDYCDSIRGIGPKRA----IELIKEHRSIEKILENIDTKKYTVPEGWL 181
+EE L L+G Y I P A EL K+ + E++DT Y P
Sbjct: 136 NEEAQKLLGLMGVPYI-----IAPTEAEAQCAELAKKGKVYAAASEDMDTLCYRTPF--- 187
Query: 182 YKEARELFRHPEV--ADPETIEFIDL-CILLGCDYCDSIRGIGPKRAIELLYSFIDLCIL 238
L RH A E I ID +L G D + F+DLCI+
Sbjct: 188 ------LLRHLTFSEAKKEPIHEIDTELVLRGLDLT--------------IEQFVDLCIM 227
Query: 239 LGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTK-----KYTVPEGWLYKEARELFR 293
LGCDYC+SIRG+GP A++L++ H SIEKI+E I+++ K+ +PE W YK+AR LF
Sbjct: 228 LGCDYCESIRGVGPVTALKLMRTHGSIEKIIEFIESEESSNTKWKIPEDWPYKQARMLFL 287
Query: 294 HPEIADPETIEL 305
PE+ D I+L
Sbjct: 288 DPEVIDGNEIDL 299
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/53 (49%), Positives = 36/53 (67%)
Query: 1 MTLKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSSTTQGRLDSFFTI 53
+ LKWS P E LV+YLC +K F+E+R+++G +L K S QGRLD FF +
Sbjct: 297 IDLKWSPPKEKELVEYLCDEKKFSEERVKSGIARLKKGLKSGIQGRLDGFFQV 349
Score = 59.3 bits (142), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 25/51 (49%), Positives = 35/51 (68%)
Query: 409 LKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSTTTQGRLDSFFTI 459
LKWS P E LV+YLC +K F+E+R+++G +L K + QGRLD FF +
Sbjct: 299 LKWSPPKEKELVEYLCDEKKFSEERVKSGIARLKKGLKSGIQGRLDGFFQV 349
>gi|308806964|ref|XP_003080793.1| FEN-1 (ISS) [Ostreococcus tauri]
gi|116059254|emb|CAL54961.1| FEN-1 (ISS) [Ostreococcus tauri]
Length = 428
Score = 171 bits (433), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 81/142 (57%), Positives = 103/142 (72%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVLE 120
APCEAEA CAAM KAG V+A TEDMD LTF + + R++ ++ + PV EF EK +
Sbjct: 195 APCEAEATCAAMCKAGLVWAVGTEDMDTLTFAAPRVARNLMAPKSAEKPVLEFDYEKTIA 254
Query: 121 GMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGW 180
G+ L+ ++FIDLCIL GCDY D+IRG+GPK A++LIKEH SIEKILE IDT+KY P+ W
Sbjct: 255 GLGLTADQFIDLCILCGCDYTDTIRGVGPKTALKLIKEHGSIEKILEAIDTEKYPPPKDW 314
Query: 181 LYKEARELFRHPEVADPETIEF 202
+ ARELF++PEV D I
Sbjct: 315 EFAGARELFKNPEVMDVSGINL 336
Score = 114 bits (284), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 64/139 (46%), Positives = 83/139 (59%), Gaps = 20/139 (14%)
Query: 167 ENIDTKKYTVPEGWLYKEARELFRHPEVADPETIEFIDLCILLGCDYCDSIRGIGPKRAI 226
E++DT + P + AR L P+ A+ +EF DY +I G+G
Sbjct: 218 EDMDTLTFAAP-----RVARNLM-APKSAEKPVLEF---------DYEKTIAGLG----- 257
Query: 227 ELLYSFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGWLYK 286
FIDLCIL GCDY D+IRG+GPK A++LIKEH SIEKILE IDT+KY P+ W +
Sbjct: 258 LTADQFIDLCILCGCDYTDTIRGVGPKTALKLIKEHGSIEKILEAIDTEKYPPPKDWEFA 317
Query: 287 EARELFRHPEIADPETIEL 305
ARELF++PE+ D I L
Sbjct: 318 GARELFKNPEVMDVSGINL 336
Score = 103 bits (257), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 50/97 (51%), Positives = 68/97 (70%), Gaps = 8/97 (8%)
Query: 305 LVADVAPSSIRE-------SRKICIDASMSLYQFLIAVRSEGNQLMSVD-GEPTSHLMGT 356
L+++ AP ++RE R++ IDASM +YQF+IAV G Q ++ + GE TSHL G
Sbjct: 48 LLSENAPGAMREQKFTSYLDRRVAIDASMHIYQFMIAVGRTGEQTLTNEAGEVTSHLQGM 107
Query: 357 FYRTIRLVEHGLKPIYVFDGKPPTLKSGELNKRMEKR 393
RT R++E G+KP+YVFDGKPPT+K GEL KR +KR
Sbjct: 108 LMRTSRMLEAGIKPVYVFDGKPPTMKGGELAKRKDKR 144
Score = 52.8 bits (125), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 24/52 (46%), Positives = 35/52 (67%), Gaps = 1/52 (1%)
Query: 1 MTLKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKAR-SSTTQGRLDSFF 51
+ L W PDE+GLV++L +K F EDR+R ++ KAR + +Q RL+SFF
Sbjct: 334 INLSWKAPDEEGLVEFLVKEKQFQEDRVRGVCARIRKARQGAASQNRLESFF 385
Score = 51.6 bits (122), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/50 (48%), Positives = 33/50 (66%), Gaps = 1/50 (2%)
Query: 409 LKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKAR-STTTQGRLDSFF 457
L W PDE+GLV++L +K F EDR+R ++ KAR +Q RL+SFF
Sbjct: 336 LSWKAPDEEGLVEFLVKEKQFQEDRVRGVCARIRKARQGAASQNRLESFF 385
>gi|303279240|ref|XP_003058913.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226460073|gb|EEH57368.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 360
Score = 171 bits (432), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 77/143 (53%), Positives = 108/143 (75%)
Query: 60 KAPCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVL 119
+APCEAEA CAA+ KAG VYA A+EDMD L F L R++ ++ P+ EF EK+L
Sbjct: 155 EAPCEAEASCAALCKAGLVYAAASEDMDTLCFACPKLARNLMSPASQGKPILEFDYEKIL 214
Query: 120 EGMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEG 179
++++ E+FID+CIL GCDYCDSI+G+GP +A+ LIK+H +IE +L+++DT+KY VPE
Sbjct: 215 TELDMTWEQFIDVCILCGCDYCDSIKGVGPVKAVSLIKKHGNIETLLQHLDTEKYPVPED 274
Query: 180 WLYKEARELFRHPEVADPETIEF 202
W YKEARELF+HP+V + + +E
Sbjct: 275 WPYKEARELFKHPDVVNTDGLEL 297
Score = 111 bits (277), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 45/74 (60%), Positives = 63/74 (85%)
Query: 232 FIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGWLYKEAREL 291
FID+CIL GCDYCDSI+G+GP +A+ LIK+H +IE +L+++DT+KY VPE W YKEAREL
Sbjct: 224 FIDVCILCGCDYCDSIKGVGPVKAVSLIKKHGNIETLLQHLDTEKYPVPEDWPYKEAREL 283
Query: 292 FRHPEIADPETIEL 305
F+HP++ + + +EL
Sbjct: 284 FKHPDVVNTDGLEL 297
Score = 105 bits (263), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 51/99 (51%), Positives = 71/99 (71%), Gaps = 8/99 (8%)
Query: 304 ELVADVAPSSIRE-------SRKICIDASMSLYQFLIAVRSEGNQLMSVD-GEPTSHLMG 355
+L++D AP +RE RK+ IDASM +YQF++ + +G+Q ++ D GE TSHL G
Sbjct: 8 KLLSDHAPGCMREQKFESYLDRKVAIDASMHIYQFMMVIGRQGDQTLTNDAGEVTSHLQG 67
Query: 356 TFYRTIRLVEHGLKPIYVFDGKPPTLKSGELNKRMEKRE 394
F RT R++E G+KP+YVFDGKPPT+K GEL KR +KR+
Sbjct: 68 MFMRTCRMLEAGIKPVYVFDGKPPTMKGGELAKRKDKRD 106
Score = 55.8 bits (133), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 26/51 (50%), Positives = 38/51 (74%)
Query: 1 MTLKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSSTTQGRLDSFF 51
+ LKW+ PDE+G+V +L G+K F E+R+RN KKL A+ ++Q RL+SFF
Sbjct: 295 LELKWTAPDEEGIVAFLVGEKQFGEERVRNTLKKLKAAKGKSSQNRLESFF 345
Score = 55.5 bits (132), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 26/50 (52%), Positives = 38/50 (76%)
Query: 408 KLKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSTTTQGRLDSFF 457
+LKW+ PDE+G+V +L G+K F E+R+RN KKL A+ ++Q RL+SFF
Sbjct: 296 ELKWTAPDEEGIVAFLVGEKQFGEERVRNTLKKLKAAKGKSSQNRLESFF 345
>gi|317374922|sp|Q013G9.2|FEN1_OSTTA RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
Length = 389
Score = 171 bits (432), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 81/142 (57%), Positives = 103/142 (72%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVLE 120
APCEAEA CAAM KAG V+A TEDMD LTF + + R++ ++ + PV EF EK +
Sbjct: 156 APCEAEATCAAMCKAGLVWAVGTEDMDTLTFAAPRVARNLMAPKSAEKPVLEFDYEKTIA 215
Query: 121 GMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGW 180
G+ L+ ++FIDLCIL GCDY D+IRG+GPK A++LIKEH SIEKILE IDT+KY P+ W
Sbjct: 216 GLGLTADQFIDLCILCGCDYTDTIRGVGPKTALKLIKEHGSIEKILEAIDTEKYPPPKDW 275
Query: 181 LYKEARELFRHPEVADPETIEF 202
+ ARELF++PEV D I
Sbjct: 276 EFAGARELFKNPEVMDVSGINL 297
Score = 113 bits (283), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 64/139 (46%), Positives = 83/139 (59%), Gaps = 20/139 (14%)
Query: 167 ENIDTKKYTVPEGWLYKEARELFRHPEVADPETIEFIDLCILLGCDYCDSIRGIGPKRAI 226
E++DT + P + AR L P+ A+ +EF DY +I G+G
Sbjct: 179 EDMDTLTFAAP-----RVARNLM-APKSAEKPVLEF---------DYEKTIAGLG----- 218
Query: 227 ELLYSFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGWLYK 286
FIDLCIL GCDY D+IRG+GPK A++LIKEH SIEKILE IDT+KY P+ W +
Sbjct: 219 LTADQFIDLCILCGCDYTDTIRGVGPKTALKLIKEHGSIEKILEAIDTEKYPPPKDWEFA 278
Query: 287 EARELFRHPEIADPETIEL 305
ARELF++PE+ D I L
Sbjct: 279 GARELFKNPEVMDVSGINL 297
Score = 103 bits (256), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 50/97 (51%), Positives = 68/97 (70%), Gaps = 8/97 (8%)
Query: 305 LVADVAPSSIRE-------SRKICIDASMSLYQFLIAVRSEGNQLMSVD-GEPTSHLMGT 356
L+++ AP ++RE R++ IDASM +YQF+IAV G Q ++ + GE TSHL G
Sbjct: 9 LLSENAPGAMREQKFTSYLDRRVAIDASMHIYQFMIAVGRTGEQTLTNEAGEVTSHLQGM 68
Query: 357 FYRTIRLVEHGLKPIYVFDGKPPTLKSGELNKRMEKR 393
RT R++E G+KP+YVFDGKPPT+K GEL KR +KR
Sbjct: 69 LMRTSRMLEAGIKPVYVFDGKPPTMKGGELAKRKDKR 105
Score = 52.8 bits (125), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 24/52 (46%), Positives = 35/52 (67%), Gaps = 1/52 (1%)
Query: 1 MTLKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKAR-SSTTQGRLDSFF 51
+ L W PDE+GLV++L +K F EDR+R ++ KAR + +Q RL+SFF
Sbjct: 295 INLSWKAPDEEGLVEFLVKEKQFQEDRVRGVCARIRKARQGAASQNRLESFF 346
Score = 51.6 bits (122), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/50 (48%), Positives = 33/50 (66%), Gaps = 1/50 (2%)
Query: 409 LKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKAR-STTTQGRLDSFF 457
L W PDE+GLV++L +K F EDR+R ++ KAR +Q RL+SFF
Sbjct: 297 LSWKAPDEEGLVEFLVKEKQFQEDRVRGVCARIRKARQGAASQNRLESFF 346
>gi|242091235|ref|XP_002441450.1| hypothetical protein SORBIDRAFT_09g026950 [Sorghum bicolor]
gi|317374865|sp|C5YUK3.1|FEN11_SORBI RecName: Full=Flap endonuclease 1-A; Short=FEN-1-A; AltName:
Full=Flap structure-specific endonuclease 1-A
gi|241946735|gb|EES19880.1| hypothetical protein SORBIDRAFT_09g026950 [Sorghum bicolor]
Length = 380
Score = 170 bits (431), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 77/135 (57%), Positives = 104/135 (77%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVLE 120
AP EAEA+CAA+ K KV+A A+EDMD+LTFG+ LRH+ ++K+PV EF + KVLE
Sbjct: 156 APSEAEAECAALCKNDKVFAVASEDMDSLTFGAPRFLRHLMDPSSKKIPVMEFDVAKVLE 215
Query: 121 GMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGW 180
+EL+ ++FIDLCIL GCDYCDSI+GIG + A++LI++H SIE ILEN++ +Y +PE W
Sbjct: 216 ELELTMDQFIDLCILCGCDYCDSIKGIGGQTALKLIRQHGSIESILENLNKDRYQIPEDW 275
Query: 181 LYKEARELFRHPEVA 195
Y+EAR LF+ P V
Sbjct: 276 PYQEARRLFKEPNVT 290
Score = 115 bits (288), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 61/112 (54%), Positives = 76/112 (67%), Gaps = 8/112 (7%)
Query: 304 ELVADVAPSSIRE-------SRKICIDASMSLYQFLIAVRSEGNQLMSVD-GEPTSHLMG 355
+L+AD AP +++E RKI IDASMS+YQFLI V G + ++ + GE TSHL G
Sbjct: 8 KLLADNAPKAMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGMETLTNEAGEVTSHLQG 67
Query: 356 TFYRTIRLVEHGLKPIYVFDGKPPTLKSGELNKRMEKREDAQKALAKAQEQG 407
F RTIRL+E G+KP+YVFDGKPP +K EL KR KREDA L +A E G
Sbjct: 68 MFNRTIRLLEAGIKPVYVFDGKPPDMKKEELAKRFSKREDATNDLKEAVEAG 119
Score = 96.3 bits (238), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 40/67 (59%), Positives = 53/67 (79%)
Query: 232 FIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGWLYKEAREL 291
FIDLCIL GCDYCDSI+GIG + A++LI++H SIE ILEN++ +Y +PE W Y+EAR L
Sbjct: 224 FIDLCILCGCDYCDSIKGIGGQTALKLIRQHGSIESILENLNKDRYQIPEDWPYQEARRL 283
Query: 292 FRHPEIA 298
F+ P +
Sbjct: 284 FKEPNVT 290
Score = 59.3 bits (142), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 23/49 (46%), Positives = 35/49 (71%)
Query: 3 LKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSSTTQGRLDSFF 51
LKW+ PDE+GL+ +L D F EDR+ +K+ A++ ++QGRL+SFF
Sbjct: 296 LKWTPPDEEGLISFLVKDNGFNEDRVTKAIEKIKSAKNKSSQGRLESFF 344
Score = 58.9 bits (141), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 23/49 (46%), Positives = 35/49 (71%)
Query: 409 LKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSTTTQGRLDSFF 457
LKW+ PDE+GL+ +L D F EDR+ +K+ A++ ++QGRL+SFF
Sbjct: 296 LKWTPPDEEGLISFLVKDNGFNEDRVTKAIEKIKSAKNKSSQGRLESFF 344
>gi|401624921|gb|EJS42958.1| rad27p [Saccharomyces arboricola H-6]
Length = 382
Score = 170 bits (431), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 81/147 (55%), Positives = 106/147 (72%), Gaps = 5/147 (3%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVLE 120
AP EAEAQCA + K GKVYA A+EDMD L + + LLRH+TFSEA+K P+ E E VL
Sbjct: 153 APTEAEAQCAELAKKGKVYAAASEDMDTLCYRTPFLLRHLTFSEAKKEPIHEIDTELVLR 212
Query: 121 GMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDT-----KKYT 175
G++L+ E+F+DLCI+LGCDYC+SIRG+GP A++L+K H SIEKI+E I++ K+
Sbjct: 213 GLDLTIEQFVDLCIMLGCDYCESIRGVGPVTALKLMKTHGSIEKIIEYIESGESSNAKWK 272
Query: 176 VPEGWLYKEARELFRHPEVADPETIEF 202
+PE W YK+AR LF PEV D +
Sbjct: 273 IPEDWPYKQARMLFLDPEVIDGNEVNL 299
Score = 122 bits (307), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 60/107 (56%), Positives = 81/107 (75%), Gaps = 8/107 (7%)
Query: 305 LVADVAPSSIRES-------RKICIDASMSLYQFLIAVRS-EGNQLMSVDGEPTSHLMGT 356
++++ PS+IR+S RK+ IDASMSLYQFLIAVR +G QL + GE TSHLMG
Sbjct: 9 IISEHVPSAIRKSDIKSFFGRKVAIDASMSLYQFLIAVRQQDGGQLTNEAGETTSHLMGM 68
Query: 357 FYRTIRLVEHGLKPIYVFDGKPPTLKSGELNKRMEKREDAQKALAKA 403
FYRT+R++++G+KP YVFDGKPP +KS EL KR +RE+ ++ LA+A
Sbjct: 69 FYRTLRMIDNGIKPCYVFDGKPPDMKSHELTKRSSRREETERKLAEA 115
Score = 95.5 bits (236), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 70/192 (36%), Positives = 96/192 (50%), Gaps = 40/192 (20%)
Query: 126 HEEFIDLCILLGCDYCDSIRGIGPKRA----IELIKEHRSIEKILENIDTKKYTVPEGWL 181
+EE L L+G Y I P A EL K+ + E++DT Y P
Sbjct: 136 NEEAQKLLGLMGIPYI-----IAPTEAEAQCAELAKKGKVYAAASEDMDTLCYRTPF--- 187
Query: 182 YKEARELFRHPEV--ADPETIEFIDLCILLGCDYCDSIRGIGPKRAIEL-LYSFIDLCIL 238
L RH A E I ID ++L R ++L + F+DLCI+
Sbjct: 188 ------LLRHLTFSEAKKEPIHEIDTELVL--------------RGLDLTIEQFVDLCIM 227
Query: 239 LGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDT-----KKYTVPEGWLYKEARELFR 293
LGCDYC+SIRG+GP A++L+K H SIEKI+E I++ K+ +PE W YK+AR LF
Sbjct: 228 LGCDYCESIRGVGPVTALKLMKTHGSIEKIIEYIESGESSNAKWKIPEDWPYKQARMLFL 287
Query: 294 HPEIADPETIEL 305
PE+ D + L
Sbjct: 288 DPEVIDGNEVNL 299
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/53 (47%), Positives = 37/53 (69%)
Query: 1 MTLKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSSTTQGRLDSFFTI 53
+ LKWS P+E L++YLC +K F+E+R+++G +L K S QGRLD FF +
Sbjct: 297 VNLKWSPPNEKELIQYLCDEKKFSEERVQSGITRLKKGLKSGIQGRLDGFFQV 349
Score = 58.9 bits (141), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 24/51 (47%), Positives = 36/51 (70%)
Query: 409 LKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSTTTQGRLDSFFTI 459
LKWS P+E L++YLC +K F+E+R+++G +L K + QGRLD FF +
Sbjct: 299 LKWSPPNEKELIQYLCDEKKFSEERVQSGITRLKKGLKSGIQGRLDGFFQV 349
>gi|389593155|ref|XP_003721831.1| putative flap endonuclease-1 (FEN-1) [Leishmania major strain
Friedlin]
gi|122048622|sp|Q4FYU7.1|FEN1_LEIMA RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|321438333|emb|CBZ12085.1| putative flap endonuclease-1 (FEN-1) [Leishmania major strain
Friedlin]
Length = 395
Score = 170 bits (431), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 78/143 (54%), Positives = 105/143 (73%)
Query: 60 KAPCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVL 119
+AP EAEAQCA +VK GK +A TEDMDALTFGS ++LRH+ S+A+K P+ E HL++VL
Sbjct: 158 QAPSEAEAQCAELVKKGKAWAVGTEDMDALTFGSTVMLRHLNISDAKKRPIVEIHLDEVL 217
Query: 120 EGMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEG 179
+ LS ++F+DLCILLGCDY + GIGP++A E I+ + SIE LE++DT K+ VP
Sbjct: 218 QTTGLSMDQFVDLCILLGCDYVPKVPGIGPQKAWEGIQRYGSIESFLESLDTTKHPVPAD 277
Query: 180 WLYKEARELFRHPEVADPETIEF 202
+ YKEAR F++PEV E I+
Sbjct: 278 FYYKEARAFFQNPEVTRAEEIDI 300
Score = 107 bits (267), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 53/115 (46%), Positives = 80/115 (69%), Gaps = 11/115 (9%)
Query: 304 ELVADVAPSSIRE-------SRKICIDASMSLYQFLIAVRS----EGNQLMSVDGEPTSH 352
+L+ D +P++IRE R+I +DASMS+YQF+IA++ +G +L + G+ TSH
Sbjct: 8 KLLYDKSPNAIREQELKNFFGRRIAVDASMSIYQFIIAMKGFQDGQGLELTNEKGDVTSH 67
Query: 353 LMGTFYRTIRLVEHGLKPIYVFDGKPPTLKSGELNKRMEKREDAQKALAKAQEQG 407
L G F RT+R+++ G+KPIYVFDGKPP LK+ EL R +K +A++A KA++ G
Sbjct: 68 LNGLFARTLRMIDEGIKPIYVFDGKPPKLKADELEMRRQKAAEAERAFEKAKDAG 122
Score = 86.7 bits (213), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 38/74 (51%), Positives = 53/74 (71%)
Query: 232 FIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGWLYKEAREL 291
F+DLCILLGCDY + GIGP++A E I+ + SIE LE++DT K+ VP + YKEAR
Sbjct: 227 FVDLCILLGCDYVPKVPGIGPQKAWEGIQRYGSIESFLESLDTTKHPVPADFYYKEARAF 286
Query: 292 FRHPEIADPETIEL 305
F++PE+ E I++
Sbjct: 287 FQNPEVTRAEEIDI 300
Score = 58.5 bits (140), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 31/84 (36%), Positives = 49/84 (58%), Gaps = 1/84 (1%)
Query: 1 MTLKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSSTTQGRLDSFFTIRREEKRK 60
+ +++S+PDE GL+++L +K F DR+ G +L A + TQGRLDSFFTI + ++
Sbjct: 298 IDIQFSEPDEVGLIQFLVKEKLFNPDRVNKGIARLRAAFTRKTQGRLDSFFTITKVPQQT 357
Query: 61 APCEAEAQCAAMVKAGK-VYATAT 83
A A + GK V+ + T
Sbjct: 358 AAARAPLVGTKRPRDGKYVHVSGT 381
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 26/57 (45%), Positives = 39/57 (68%)
Query: 405 EQGKLKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSTTTQGRLDSFFTIRR 461
E+ +++S+PDE GL+++L +K F DR+ G +L A + TQGRLDSFFTI +
Sbjct: 296 EEIDIQFSEPDEVGLIQFLVKEKLFNPDRVNKGIARLRAAFTRKTQGRLDSFFTITK 352
>gi|302796239|ref|XP_002979882.1| hypothetical protein SELMODRAFT_111465 [Selaginella moellendorffii]
gi|302813529|ref|XP_002988450.1| hypothetical protein SELMODRAFT_128023 [Selaginella moellendorffii]
gi|300143852|gb|EFJ10540.1| hypothetical protein SELMODRAFT_128023 [Selaginella moellendorffii]
gi|300152642|gb|EFJ19284.1| hypothetical protein SELMODRAFT_111465 [Selaginella moellendorffii]
Length = 377
Score = 170 bits (431), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 77/136 (56%), Positives = 105/136 (77%), Gaps = 1/136 (0%)
Query: 60 KAPCEAEAQCAAMVKAGKV-YATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKV 118
+APCEAEA+CAA+ KA KV YA A+EDMD+LTFGS LRH+ +RK+PV EF +
Sbjct: 152 EAPCEAEAECAALCKADKVVYAVASEDMDSLTFGSPRFLRHLMEPASRKIPVMEFQISTA 211
Query: 119 LEGMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPE 178
L+ + LS ++FIDLCIL GCDYCD+IRGIGP+ A++LI++H ++E +LEN++ +Y +PE
Sbjct: 212 LQELNLSMDQFIDLCILCGCDYCDTIRGIGPQTALKLIRQHSTLEAVLENLNKDRYQIPE 271
Query: 179 GWLYKEARELFRHPEV 194
W Y+EAR LF+ P V
Sbjct: 272 SWPYQEARRLFKEPIV 287
Score = 116 bits (291), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 58/114 (50%), Positives = 81/114 (71%), Gaps = 8/114 (7%)
Query: 304 ELVADVAPSSIRE-------SRKICIDASMSLYQFLIAVRSEGNQLMSVD-GEPTSHLMG 355
+L+AD AP +++E RKI +DASMS+YQFLI V G ++++ + GE TSHL G
Sbjct: 5 KLLADNAPGAMKEQKFESYFGRKIAVDASMSIYQFLIVVGRTGTEMLTNEAGEITSHLQG 64
Query: 356 TFYRTIRLVEHGLKPIYVFDGKPPTLKSGELNKRMEKREDAQKALAKAQEQGKL 409
F RT+RL+E G+KP+YVFDGKPP LK EL KR +RE+A + L +A E+G++
Sbjct: 65 MFTRTVRLLESGMKPVYVFDGKPPELKKAELVKRGARREEATEGLTEAIEKGEV 118
Score = 97.4 bits (241), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 42/75 (56%), Positives = 58/75 (77%), Gaps = 1/75 (1%)
Query: 232 FIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGWLYKEAREL 291
FIDLCIL GCDYCD+IRGIGP+ A++LI++H ++E +LEN++ +Y +PE W Y+EAR L
Sbjct: 222 FIDLCILCGCDYCDTIRGIGPQTALKLIRQHSTLEAVLENLNKDRYQIPESWPYQEARRL 281
Query: 292 FRHPEI-ADPETIEL 305
F+ P + D E EL
Sbjct: 282 FKEPIVLPDEELPEL 296
Score = 52.8 bits (125), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 37/54 (68%)
Query: 404 QEQGKLKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSTTTQGRLDSFF 457
+E +LKW+ PDE+GL K+L + F DR+ +++ A++ ++QGR++SFF
Sbjct: 291 EELPELKWNAPDEEGLKKFLVEENGFNIDRVTKAIERIKSAKNKSSQGRMESFF 344
Score = 52.4 bits (124), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 34/49 (69%)
Query: 3 LKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSSTTQGRLDSFF 51
LKW+ PDE+GL K+L + F DR+ +++ A++ ++QGR++SFF
Sbjct: 296 LKWNAPDEEGLKKFLVEENGFNIDRVTKAIERIKSAKNKSSQGRMESFF 344
>gi|317376169|sp|B3LQY3.1|FEN1_YEAS1 RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|190409721|gb|EDV12986.1| structure-specific endonuclease RAD27 [Saccharomyces cerevisiae
RM11-1a]
Length = 382
Score = 170 bits (431), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 82/147 (55%), Positives = 105/147 (71%), Gaps = 5/147 (3%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVLE 120
AP EAEAQCA + K GKVYA A+EDMD L + + LLRH+TFSE +K P+ E E VL
Sbjct: 153 APTEAEAQCAELAKKGKVYAAASEDMDTLCYRTPFLLRHLTFSETKKEPIHEIDTELVLR 212
Query: 121 GMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDT-----KKYT 175
G++L+ E+F+DLCI+LGCDYC+SIRG+GP A++LIK H SIEKI+E I++ K+
Sbjct: 213 GLDLTIEQFVDLCIMLGCDYCESIRGVGPVTALKLIKTHGSIEKIVEFIESGESNNTKWK 272
Query: 176 VPEGWLYKEARELFRHPEVADPETIEF 202
+PE W YK+AR LF PEV D I
Sbjct: 273 IPEDWPYKQARMLFLDPEVIDGNEINL 299
Score = 122 bits (305), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 61/107 (57%), Positives = 80/107 (74%), Gaps = 8/107 (7%)
Query: 305 LVADVAPSSIRES-------RKICIDASMSLYQFLIAVRS-EGNQLMSVDGEPTSHLMGT 356
++++ PS+IR+S RK+ IDASMSLYQFLIAVR +G QL + GE TSHLMG
Sbjct: 9 IISEHVPSAIRKSDIKSFFGRKVAIDASMSLYQFLIAVRQQDGGQLTNEAGETTSHLMGM 68
Query: 357 FYRTIRLVEHGLKPIYVFDGKPPTLKSGELNKRMEKREDAQKALAKA 403
FYRT+R++++G+KP YVFDGKPP LKS EL KR +R + +K LA+A
Sbjct: 69 FYRTLRMIDNGIKPCYVFDGKPPDLKSHELTKRSSRRVETEKKLAEA 115
Score = 96.7 bits (239), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 71/192 (36%), Positives = 97/192 (50%), Gaps = 40/192 (20%)
Query: 126 HEEFIDLCILLGCDYCDSIRGIGPKRA----IELIKEHRSIEKILENIDTKKYTVPEGWL 181
+EE L L+G Y I P A EL K+ + E++DT Y P
Sbjct: 136 NEEAQKLLGLMGIPYI-----IAPTEAEAQCAELAKKGKVYAAASEDMDTLCYRTPF--- 187
Query: 182 YKEARELFRHPEVADP--ETIEFIDLCILLGCDYCDSIRGIGPKRAIEL-LYSFIDLCIL 238
L RH ++ E I ID ++L R ++L + F+DLCI+
Sbjct: 188 ------LLRHLTFSETKKEPIHEIDTELVL--------------RGLDLTIEQFVDLCIM 227
Query: 239 LGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDT-----KKYTVPEGWLYKEARELFR 293
LGCDYC+SIRG+GP A++LIK H SIEKI+E I++ K+ +PE W YK+AR LF
Sbjct: 228 LGCDYCESIRGVGPVTALKLIKTHGSIEKIVEFIESGESNNTKWKIPEDWPYKQARMLFL 287
Query: 294 HPEIADPETIEL 305
PE+ D I L
Sbjct: 288 DPEVIDGNEINL 299
Score = 62.0 bits (149), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 26/53 (49%), Positives = 36/53 (67%)
Query: 1 MTLKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSSTTQGRLDSFFTI 53
+ LKWS P E L++YLC DK F+E+R+++G +L K S QGRLD FF +
Sbjct: 297 INLKWSPPKEKELIEYLCDDKKFSEERVKSGISRLKKGLKSGIQGRLDGFFQV 349
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/51 (49%), Positives = 35/51 (68%)
Query: 409 LKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSTTTQGRLDSFFTI 459
LKWS P E L++YLC DK F+E+R+++G +L K + QGRLD FF +
Sbjct: 299 LKWSPPKEKELIEYLCDDKKFSEERVKSGISRLKKGLKSGIQGRLDGFFQV 349
>gi|317374880|sp|C4YLS2.1|FEN1_CANAW RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|238879915|gb|EEQ43553.1| structure-specific endonuclease RAD27 [Candida albicans WO-1]
Length = 372
Score = 170 bits (431), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 78/144 (54%), Positives = 105/144 (72%), Gaps = 2/144 (1%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVLE 120
APCEAEAQCA + + GKVYA A+EDMD L + LLRH+TFSEARK+P+ + + +
Sbjct: 156 APCEAEAQCAELARGGKVYAAASEDMDTLCYEPPFLLRHLTFSEARKMPIDQIEYKDAIA 215
Query: 121 GMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENI--DTKKYTVPE 178
G++++ E+FIDLCILLGCDYC+SI+GIG A +LIKEH S++ I+E I + KYT+PE
Sbjct: 216 GLDMTKEQFIDLCILLGCDYCESIKGIGQATAFKLIKEHGSLDNIVEWIKNNKTKYTLPE 275
Query: 179 GWLYKEARELFRHPEVADPETIEF 202
W + EAR+LF +PEV + I
Sbjct: 276 NWPFDEARQLFMNPEVTNASEISL 299
Score = 123 bits (309), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 62/114 (54%), Positives = 82/114 (71%), Gaps = 8/114 (7%)
Query: 304 ELVADVAPSSIRE-------SRKICIDASMSLYQFLIAVR-SEGNQLMSVDGEPTSHLMG 355
+L+ + +PS+ +E RK+ IDASM LYQFLIAVR S+G QL + DGE TSHL G
Sbjct: 8 QLIKEHSPSAYKEFQLKNLFGRKVAIDASMCLYQFLIAVRQSDGQQLTNEDGETTSHLSG 67
Query: 356 TFYRTIRLVEHGLKPIYVFDGKPPTLKSGELNKRMEKREDAQKALAKAQEQGKL 409
FYRTI++VE+ +KP+YVFDGKPP LK GEL KR+ +RE+AQK ++G +
Sbjct: 68 MFYRTIKMVENNIKPVYVFDGKPPVLKGGELEKRLLRREEAQKQKTALGDEGTV 121
Score = 94.4 bits (233), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 47/96 (48%), Positives = 64/96 (66%), Gaps = 7/96 (7%)
Query: 212 DYCDSIRGIGPKRAIELLYSFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILEN 271
+Y D+I G+ + FIDLCILLGCDYC+SI+GIG A +LIKEH S++ I+E
Sbjct: 209 EYKDAIAGLDMTKE-----QFIDLCILLGCDYCESIKGIGQATAFKLIKEHGSLDNIVEW 263
Query: 272 I--DTKKYTVPEGWLYKEARELFRHPEIADPETIEL 305
I + KYT+PE W + EAR+LF +PE+ + I L
Sbjct: 264 IKNNKTKYTLPENWPFDEARQLFMNPEVTNASEISL 299
Score = 68.2 bits (165), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 31/63 (49%), Positives = 45/63 (71%), Gaps = 2/63 (3%)
Query: 1 MTLKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSSTTQGRLDSFFTIRR--EEK 58
++LKW +PD DGL++++ K F+EDRIR+GA+KL K QGRLD FF + + ++K
Sbjct: 297 ISLKWKEPDVDGLIEFMVKQKGFSEDRIRSGAEKLKKGLKGGVQGRLDGFFKVVKTDDKK 356
Query: 59 RKA 61
RKA
Sbjct: 357 RKA 359
Score = 66.6 bits (161), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 28/61 (45%), Positives = 41/61 (67%)
Query: 409 LKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSTTTQGRLDSFFTIRREEKRKSR 468
LKW +PD DGL++++ K F+EDRIR+GA+KL K QGRLD FF + + + +K +
Sbjct: 299 LKWKEPDVDGLIEFMVKQKGFSEDRIRSGAEKLKKGLKGGVQGRLDGFFKVVKTDDKKRK 358
Query: 469 C 469
Sbjct: 359 A 359
>gi|258573689|ref|XP_002541026.1| DNA-repair protein rad2 [Uncinocarpus reesii 1704]
gi|237901292|gb|EEP75693.1| DNA-repair protein rad2 [Uncinocarpus reesii 1704]
Length = 413
Score = 170 bits (431), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 78/137 (56%), Positives = 104/137 (75%), Gaps = 3/137 (2%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVLE 120
AP EAEAQCA + +AGKVYA A+EDMD L F S ILLRH+TFSE RK P+ E HL++VLE
Sbjct: 173 APTEAEAQCAVLARAGKVYAAASEDMDTLCFDSPILLRHLTFSEQRKEPILEIHLDRVLE 232
Query: 121 GMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILE---NIDTKKYTVP 177
G+ + + F+DLCILLGCDY D I +GP A++LI++H S+EK++E N +KYT+P
Sbjct: 233 GLGMDRKTFVDLCILLGCDYLDPIPKVGPNTALKLIRDHGSLEKVVEAMKNDPKQKYTIP 292
Query: 178 EGWLYKEARELFRHPEV 194
+ W Y++AR+LF P+V
Sbjct: 293 DDWPYEQARDLFFEPDV 309
Score = 105 bits (262), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 49/85 (57%), Positives = 65/85 (76%)
Query: 323 DASMSLYQFLIAVRSEGNQLMSVDGEPTSHLMGTFYRTIRLVEHGLKPIYVFDGKPPTLK 382
D S FLIAVRS+G QLM+ GE TSHLMG FYRT+R+V++G+KP+YVFDG PP LK
Sbjct: 52 DTLESNISFLIAVRSDGQQLMNESGETTSHLMGLFYRTLRMVDNGIKPLYVFDGAPPKLK 111
Query: 383 SGELNKRMEKREDAQKALAKAQEQG 407
SGEL KR+ ++++A + +A+E G
Sbjct: 112 SGELAKRIARKQEAAEQHEEAKETG 136
Score = 84.0 bits (206), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 35/70 (50%), Positives = 53/70 (75%), Gaps = 3/70 (4%)
Query: 231 SFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILE---NIDTKKYTVPEGWLYKE 287
+F+DLCILLGCDY D I +GP A++LI++H S+EK++E N +KYT+P+ W Y++
Sbjct: 240 TFVDLCILLGCDYLDPIPKVGPNTALKLIRDHGSLEKVVEAMKNDPKQKYTIPDDWPYEQ 299
Query: 288 ARELFRHPEI 297
AR+LF P++
Sbjct: 300 ARDLFFEPDV 309
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/49 (51%), Positives = 32/49 (65%)
Query: 409 LKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSTTTQGRLDSFF 457
KW PD +GLVK+L K F+EDR+R+GA +L K T Q RL+ FF
Sbjct: 319 FKWEAPDVEGLVKFLVEGKGFSEDRVRSGAARLQKNMKTAQQSRLEGFF 367
Score = 55.8 bits (133), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 24/49 (48%), Positives = 32/49 (65%)
Query: 3 LKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSSTTQGRLDSFF 51
KW PD +GLVK+L K F+EDR+R+GA +L K + Q RL+ FF
Sbjct: 319 FKWEAPDVEGLVKFLVEGKGFSEDRVRSGAARLQKNMKTAQQSRLEGFF 367
>gi|326470331|gb|EGD94340.1| flap endonuclease [Trichophyton tonsurans CBS 112818]
Length = 376
Score = 170 bits (430), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 76/137 (55%), Positives = 104/137 (75%), Gaps = 3/137 (2%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVLE 120
AP EAEAQCA + KAGKV+ A+EDMD L F + +LLRH+TFSE RK P+ E HL+KVLE
Sbjct: 136 APTEAEAQCAVLAKAGKVFGAASEDMDTLCFAAPVLLRHLTFSEQRKEPILEIHLDKVLE 195
Query: 121 GMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDT---KKYTVP 177
G+ + +F+DLCILLGCDY D I +GP A+++I++H ++EK++E I++ KKY +P
Sbjct: 196 GLGMDMTQFVDLCILLGCDYLDPIPKVGPNTALKMIRDHGTLEKVVEAIESDPKKKYVIP 255
Query: 178 EGWLYKEARELFRHPEV 194
E W Y +ARELF +P+V
Sbjct: 256 EDWPYLQARELFFNPDV 272
Score = 85.5 bits (210), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 35/72 (48%), Positives = 54/72 (75%), Gaps = 3/72 (4%)
Query: 229 LYSFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDT---KKYTVPEGWLY 285
+ F+DLCILLGCDY D I +GP A+++I++H ++EK++E I++ KKY +PE W Y
Sbjct: 201 MTQFVDLCILLGCDYLDPIPKVGPNTALKMIRDHGTLEKVVEAIESDPKKKYVIPEDWPY 260
Query: 286 KEARELFRHPEI 297
+ARELF +P++
Sbjct: 261 LQARELFFNPDV 272
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 33/48 (68%), Positives = 40/48 (83%)
Query: 342 LMSVDGEPTSHLMGTFYRTIRLVEHGLKPIYVFDGKPPTLKSGELNKR 389
L + GE TSHLMG FYRT+R+V++G+KP+YVFDG PP LKSGEL KR
Sbjct: 34 LTNESGETTSHLMGMFYRTLRMVDNGIKPLYVFDGAPPKLKSGELAKR 81
Score = 61.6 bits (148), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 29/60 (48%), Positives = 41/60 (68%), Gaps = 1/60 (1%)
Query: 3 LKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSSTTQGRLDSFF-TIRREEKRKA 61
KWS PD +GLV++L +K F+EDR+RNGA +L K S Q RL+ FF + + E++KA
Sbjct: 282 FKWSAPDVEGLVRFLVEEKGFSEDRVRNGAARLTKNLKSAQQSRLEGFFKPLAKTEEQKA 341
Score = 61.6 bits (148), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 42/115 (36%), Positives = 60/115 (52%), Gaps = 9/115 (7%)
Query: 355 GTFYRTIRLVEHGLKPIYVFDGKPPTLKSGELNKRMEKREDAQKALAKAQEQGKLKWSDP 414
GT + + +E K YV P L++ EL + R A A E KWS P
Sbjct: 235 GTLEKVVEAIESDPKKKYVIPEDWPYLQARELFFNPDVRP------ADAPE-CDFKWSAP 287
Query: 415 DEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSTTTQGRLDSFFT--IRREEKRKS 467
D +GLV++L +K F+EDR+RNGA +L K + Q RL+ FF + EE++ S
Sbjct: 288 DVEGLVRFLVEEKGFSEDRVRNGAARLTKNLKSAQQSRLEGFFKPLAKTEEQKAS 342
>gi|317376210|sp|C4JDR3.2|FEN1_UNCRE RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
Length = 395
Score = 170 bits (430), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 78/137 (56%), Positives = 104/137 (75%), Gaps = 3/137 (2%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVLE 120
AP EAEAQCA + +AGKVYA A+EDMD L F S ILLRH+TFSE RK P+ E HL++VLE
Sbjct: 155 APTEAEAQCAVLARAGKVYAAASEDMDTLCFDSPILLRHLTFSEQRKEPILEIHLDRVLE 214
Query: 121 GMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILE---NIDTKKYTVP 177
G+ + + F+DLCILLGCDY D I +GP A++LI++H S+EK++E N +KYT+P
Sbjct: 215 GLGMDRKTFVDLCILLGCDYLDPIPKVGPNTALKLIRDHGSLEKVVEAMKNDPKQKYTIP 274
Query: 178 EGWLYKEARELFRHPEV 194
+ W Y++AR+LF P+V
Sbjct: 275 DDWPYEQARDLFFEPDV 291
Score = 127 bits (319), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 58/111 (52%), Positives = 84/111 (75%), Gaps = 7/111 (6%)
Query: 304 ELVADVAPSSIRES-------RKICIDASMSLYQFLIAVRSEGNQLMSVDGEPTSHLMGT 356
+++++ AP +++ RK+ IDASMS+Y FLIAVRS+G QLM+ GE TSHLMG
Sbjct: 8 QIISENAPDAVKSGEIKNQFGRKVAIDASMSIYSFLIAVRSDGQQLMNESGETTSHLMGL 67
Query: 357 FYRTIRLVEHGLKPIYVFDGKPPTLKSGELNKRMEKREDAQKALAKAQEQG 407
FYRT+R+V++G+KP+YVFDG PP LKSGEL KR+ ++++A + +A+E G
Sbjct: 68 FYRTLRMVDNGIKPLYVFDGAPPKLKSGELAKRIARKQEAAEQHEEAKETG 118
Score = 84.0 bits (206), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 35/70 (50%), Positives = 53/70 (75%), Gaps = 3/70 (4%)
Query: 231 SFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILE---NIDTKKYTVPEGWLYKE 287
+F+DLCILLGCDY D I +GP A++LI++H S+EK++E N +KYT+P+ W Y++
Sbjct: 222 TFVDLCILLGCDYLDPIPKVGPNTALKLIRDHGSLEKVVEAMKNDPKQKYTIPDDWPYEQ 281
Query: 288 ARELFRHPEI 297
AR+LF P++
Sbjct: 282 ARDLFFEPDV 291
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/49 (51%), Positives = 32/49 (65%)
Query: 409 LKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSTTTQGRLDSFF 457
KW PD +GLVK+L K F+EDR+R+GA +L K T Q RL+ FF
Sbjct: 301 FKWEAPDVEGLVKFLVEGKGFSEDRVRSGAARLQKNMKTAQQSRLEGFF 349
Score = 55.8 bits (133), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 24/49 (48%), Positives = 32/49 (65%)
Query: 3 LKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSSTTQGRLDSFF 51
KW PD +GLVK+L K F+EDR+R+GA +L K + Q RL+ FF
Sbjct: 301 FKWEAPDVEGLVKFLVEGKGFSEDRVRSGAARLQKNMKTAQQSRLEGFF 349
>gi|443894995|dbj|GAC72341.1| hypothetical protein PANT_7d00055 [Pseudozyma antarctica T-34]
Length = 373
Score = 169 bits (429), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 76/137 (55%), Positives = 104/137 (75%), Gaps = 3/137 (2%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVLE 120
AP EAEAQCA + +AGKVYA +EDMD LTFG+ ILL+H+T SE +KLPV + L K LE
Sbjct: 156 APSEAEAQCAELARAGKVYAAGSEDMDTLTFGTPILLKHLTASEQKKLPVHQVDLPKALE 215
Query: 121 GMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENID---TKKYTVP 177
G+++ +FIDLCILLGCDY D I+GIGPK A++LI+EH+S+E ++E++ K +P
Sbjct: 216 GLQMDMPQFIDLCILLGCDYLDPIKGIGPKTALKLIREHKSLENVVEHLKEEAKKSVQIP 275
Query: 178 EGWLYKEARELFRHPEV 194
E W ++EAR++F P+V
Sbjct: 276 EHWPFQEARKIFEAPDV 292
Score = 113 bits (282), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 55/93 (59%), Positives = 70/93 (75%), Gaps = 8/93 (8%)
Query: 305 LVADVAPSSIRE-------SRKICIDASMSLYQFLIAVR-SEGNQLMSVDGEPTSHLMGT 356
L++D AP +IRE RK+ IDASMSLYQFLIAVR ++G QLM+ GE TSHL+G
Sbjct: 9 LISDEAPGAIREMEIKTYFGRKVAIDASMSLYQFLIAVRQNDGQQLMTESGETTSHLLGF 68
Query: 357 FYRTIRLVEHGLKPIYVFDGKPPTLKSGELNKR 389
FYRT+R++++G+KP+YVFDG PP LK L KR
Sbjct: 69 FYRTLRMIDYGIKPMYVFDGTPPDLKKELLKKR 101
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 37/77 (48%), Positives = 57/77 (74%), Gaps = 3/77 (3%)
Query: 232 FIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENID---TKKYTVPEGWLYKEA 288
FIDLCILLGCDY D I+GIGPK A++LI+EH+S+E ++E++ K +PE W ++EA
Sbjct: 224 FIDLCILLGCDYLDPIKGIGPKTALKLIREHKSLENVVEHLKEEAKKSVQIPEHWPFQEA 283
Query: 289 RELFRHPEIADPETIEL 305
R++F P++ + ++L
Sbjct: 284 RKIFEAPDVQKGKDLDL 300
Score = 70.9 bits (172), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 30/54 (55%), Positives = 40/54 (74%)
Query: 1 MTLKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSSTTQGRLDSFFTIR 54
+ LKW PD +G+VK+LC DK F+EDR+R G +KL K+ S QGRLD FFT++
Sbjct: 298 LDLKWEAPDVEGMVKFLCQDKGFSEDRVRKGCEKLQKSLSQKQQGRLDGFFTVK 351
Score = 70.1 bits (170), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 30/52 (57%), Positives = 39/52 (75%)
Query: 409 LKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSTTTQGRLDSFFTIR 460
LKW PD +G+VK+LC DK F+EDR+R G +KL K+ S QGRLD FFT++
Sbjct: 300 LKWEAPDVEGMVKFLCQDKGFSEDRVRKGCEKLQKSLSQKQQGRLDGFFTVK 351
>gi|350287839|gb|EGZ69075.1| DNA-repair protein rad2, partial [Neurospora tetrasperma FGSC 2509]
Length = 390
Score = 169 bits (429), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 80/137 (58%), Positives = 104/137 (75%), Gaps = 3/137 (2%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVLE 120
AP EAEAQCA + +AGKVYA A+EDMD L F + ILLRH+TFSE RK P+QE HLEKVLE
Sbjct: 151 APTEAEAQCAVLARAGKVYAAASEDMDTLCFNAPILLRHLTFSEQRKEPIQEIHLEKVLE 210
Query: 121 GMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILE--NIDTK-KYTVP 177
G+ + ++FIDLCILLGCDY D I +GP A++LI+EH ++EK++E D K +Y +P
Sbjct: 211 GLGMERKQFIDLCILLGCDYLDPIPKVGPSTALKLIREHGTLEKVVEWMKADPKGRYQIP 270
Query: 178 EGWLYKEARELFRHPEV 194
E W +++AR LF P+V
Sbjct: 271 EDWPFEDARALFFEPDV 287
Score = 124 bits (311), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 60/112 (53%), Positives = 82/112 (73%), Gaps = 9/112 (8%)
Query: 305 LVADVAPSSIRES-------RKICID--ASMSLYQFLIAVRSEGNQLMSVDGEPTSHLMG 355
++ D AP +I+E RK+ I SMS+Y FLIAVRS+G QLM+ GE TSHLMG
Sbjct: 3 VIKDEAPDAIKEGEIKNQFGRKVAIKKKTSMSIYSFLIAVRSDGQQLMNEAGETTSHLMG 62
Query: 356 TFYRTIRLVEHGLKPIYVFDGKPPTLKSGELNKRMEKREDAQKALAKAQEQG 407
FYRT+R+V++G+KP+YVFDG PP LKSGEL KR +++++A + L +A+E G
Sbjct: 63 MFYRTLRMVDNGIKPLYVFDGAPPKLKSGELAKRFQRKQEATEGLEEAKETG 114
Score = 77.8 bits (190), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 38/84 (45%), Positives = 56/84 (66%), Gaps = 8/84 (9%)
Query: 217 IRGIGPKRAIELLYSFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILE--NIDT 274
+ G+G +R FIDLCILLGCDY D I +GP A++LI+EH ++EK++E D
Sbjct: 209 LEGLGMERK-----QFIDLCILLGCDYLDPIPKVGPSTALKLIREHGTLEKVVEWMKADP 263
Query: 275 K-KYTVPEGWLYKEARELFRHPEI 297
K +Y +PE W +++AR LF P++
Sbjct: 264 KGRYQIPEDWPFEDARALFFEPDV 287
Score = 56.2 bits (134), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 25/61 (40%), Positives = 40/61 (65%), Gaps = 2/61 (3%)
Query: 409 LKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSTTTQGRLDSFFTI--RREEKRK 466
KW PD +GL+++L +K F+EDR+R+ KL K T+ Q R++ FF I + EE++K
Sbjct: 297 FKWDKPDIEGLIQFLVHEKGFSEDRVRSAGTKLEKNMKTSQQARIEGFFKILPKTEEEKK 356
Query: 467 S 467
+
Sbjct: 357 A 357
Score = 56.2 bits (134), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 25/61 (40%), Positives = 40/61 (65%), Gaps = 2/61 (3%)
Query: 3 LKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSSTTQGRLDSFFTI--RREEKRK 60
KW PD +GL+++L +K F+EDR+R+ KL K ++ Q R++ FF I + EE++K
Sbjct: 297 FKWDKPDIEGLIQFLVHEKGFSEDRVRSAGTKLEKNMKTSQQARIEGFFKILPKTEEEKK 356
Query: 61 A 61
A
Sbjct: 357 A 357
>gi|336467513|gb|EGO55677.1| DNA-repair protein rad2 [Neurospora tetrasperma FGSC 2508]
Length = 396
Score = 169 bits (429), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 80/137 (58%), Positives = 104/137 (75%), Gaps = 3/137 (2%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVLE 120
AP EAEAQCA + +AGKVYA A+EDMD L F + ILLRH+TFSE RK P+QE HLEKVLE
Sbjct: 157 APTEAEAQCAVLARAGKVYAAASEDMDTLCFNAPILLRHLTFSEQRKEPIQEIHLEKVLE 216
Query: 121 GMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILE--NIDTK-KYTVP 177
G+ + ++FIDLCILLGCDY D I +GP A++LI+EH ++EK++E D K +Y +P
Sbjct: 217 GLGMERKQFIDLCILLGCDYLDPIPKVGPSTALKLIREHGTLEKVVEWMKADPKGRYQIP 276
Query: 178 EGWLYKEARELFRHPEV 194
E W +++AR LF P+V
Sbjct: 277 EDWPFEDARALFFEPDV 293
Score = 124 bits (311), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 60/112 (53%), Positives = 82/112 (73%), Gaps = 9/112 (8%)
Query: 305 LVADVAPSSIRES-------RKICID--ASMSLYQFLIAVRSEGNQLMSVDGEPTSHLMG 355
++ D AP +I+E RK+ I SMS+Y FLIAVRS+G QLM+ GE TSHLMG
Sbjct: 9 VIKDEAPDAIKEGEIKNQFGRKVAIKKKTSMSIYSFLIAVRSDGQQLMNEAGETTSHLMG 68
Query: 356 TFYRTIRLVEHGLKPIYVFDGKPPTLKSGELNKRMEKREDAQKALAKAQEQG 407
FYRT+R+V++G+KP+YVFDG PP LKSGEL KR +++++A + L +A+E G
Sbjct: 69 MFYRTLRMVDNGIKPLYVFDGAPPKLKSGELAKRFQRKQEATEGLEEAKETG 120
Score = 77.8 bits (190), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 38/84 (45%), Positives = 56/84 (66%), Gaps = 8/84 (9%)
Query: 217 IRGIGPKRAIELLYSFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILE--NIDT 274
+ G+G +R FIDLCILLGCDY D I +GP A++LI+EH ++EK++E D
Sbjct: 215 LEGLGMERK-----QFIDLCILLGCDYLDPIPKVGPSTALKLIREHGTLEKVVEWMKADP 269
Query: 275 K-KYTVPEGWLYKEARELFRHPEI 297
K +Y +PE W +++AR LF P++
Sbjct: 270 KGRYQIPEDWPFEDARALFFEPDV 293
Score = 56.2 bits (134), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 25/61 (40%), Positives = 40/61 (65%), Gaps = 2/61 (3%)
Query: 409 LKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSTTTQGRLDSFFTI--RREEKRK 466
KW PD +GL+++L +K F+EDR+R+ KL K T+ Q R++ FF I + EE++K
Sbjct: 303 FKWDKPDIEGLIQFLVHEKGFSEDRVRSAGTKLEKNMKTSQQARIEGFFKILPKTEEEKK 362
Query: 467 S 467
+
Sbjct: 363 A 363
Score = 56.2 bits (134), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 25/61 (40%), Positives = 40/61 (65%), Gaps = 2/61 (3%)
Query: 3 LKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSSTTQGRLDSFFTI--RREEKRK 60
KW PD +GL+++L +K F+EDR+R+ KL K ++ Q R++ FF I + EE++K
Sbjct: 303 FKWDKPDIEGLIQFLVHEKGFSEDRVRSAGTKLEKNMKTSQQARIEGFFKILPKTEEEKK 362
Query: 61 A 61
A
Sbjct: 363 A 363
>gi|326478513|gb|EGE02523.1| flap endonuclease [Trichophyton equinum CBS 127.97]
Length = 353
Score = 169 bits (429), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 76/137 (55%), Positives = 104/137 (75%), Gaps = 3/137 (2%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVLE 120
AP EAEAQCA + KAGKV+ A+EDMD L F + +LLRH+TFSE RK P+ E HL+KVLE
Sbjct: 151 APTEAEAQCAVLAKAGKVFGAASEDMDTLCFAAPVLLRHLTFSEQRKEPILEIHLDKVLE 210
Query: 121 GMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDT---KKYTVP 177
G+ + +F+DLCILLGCDY D I +GP A+++I++H ++EK++E I++ KKY +P
Sbjct: 211 GLGMDMTQFVDLCILLGCDYLDPIPKVGPNTALKMIRDHGTLEKVVEAIESDPKKKYVIP 270
Query: 178 EGWLYKEARELFRHPEV 194
E W Y +ARELF +P+V
Sbjct: 271 EDWPYLQARELFFNPDV 287
Score = 103 bits (258), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 49/92 (53%), Positives = 67/92 (72%), Gaps = 10/92 (10%)
Query: 305 LVADVAPSSIRES-------RKICIDASMSLYQFLIAVRSEGNQLMSVDGEPTSHLMGTF 357
++++ AP +++ R++ IDA +Y FLIAVRS+G QL + GE TSHLMG F
Sbjct: 8 IISENAPDAVKSGEIKNQFGRRVAIDA---IYSFLIAVRSDGQQLTNESGETTSHLMGMF 64
Query: 358 YRTIRLVEHGLKPIYVFDGKPPTLKSGELNKR 389
YRT+R+V++G+KP+YVFDG PP LKSGEL KR
Sbjct: 65 YRTLRMVDNGIKPLYVFDGAPPKLKSGELAKR 96
Score = 84.7 bits (208), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 35/72 (48%), Positives = 54/72 (75%), Gaps = 3/72 (4%)
Query: 229 LYSFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDT---KKYTVPEGWLY 285
+ F+DLCILLGCDY D I +GP A+++I++H ++EK++E I++ KKY +PE W Y
Sbjct: 216 MTQFVDLCILLGCDYLDPIPKVGPNTALKMIRDHGTLEKVVEAIESDPKKKYVIPEDWPY 275
Query: 286 KEARELFRHPEI 297
+ARELF +P++
Sbjct: 276 LQARELFFNPDV 287
>gi|317374923|sp|A7UW97.2|FEN1_NEUCR RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
Length = 394
Score = 169 bits (429), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 80/137 (58%), Positives = 104/137 (75%), Gaps = 3/137 (2%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVLE 120
AP EAEAQCA + +AGKVYA A+EDMD L F + ILLRH+TFSE RK P+QE HLEKVLE
Sbjct: 155 APTEAEAQCAVLARAGKVYAAASEDMDTLCFNAPILLRHLTFSEQRKEPIQEIHLEKVLE 214
Query: 121 GMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILE--NIDTK-KYTVP 177
G+ + ++FIDLCILLGCDY D I +GP A++LI+EH ++EK++E D K +Y +P
Sbjct: 215 GLGMERKQFIDLCILLGCDYLDPIPKVGPSTALKLIREHGTLEKVVEWMKADPKGRYQIP 274
Query: 178 EGWLYKEARELFRHPEV 194
E W +++AR LF P+V
Sbjct: 275 EDWPFEDARTLFFEPDV 291
Score = 133 bits (335), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 62/110 (56%), Positives = 84/110 (76%), Gaps = 7/110 (6%)
Query: 305 LVADVAPSSIRES-------RKICIDASMSLYQFLIAVRSEGNQLMSVDGEPTSHLMGTF 357
++ D AP +I+E RK+ IDASMS+Y FLIAVRS+G QLM+ GE TSHLMG F
Sbjct: 9 VIKDEAPDAIKEGEIKNQFGRKVAIDASMSIYSFLIAVRSDGQQLMNEAGETTSHLMGMF 68
Query: 358 YRTIRLVEHGLKPIYVFDGKPPTLKSGELNKRMEKREDAQKALAKAQEQG 407
YRT+R+V++G+KP+YVFDG PP LKSGEL KR +++++A + L +A+E G
Sbjct: 69 YRTLRMVDNGIKPLYVFDGAPPKLKSGELAKRFQRKQEATEGLEEAKETG 118
Score = 77.8 bits (190), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 38/84 (45%), Positives = 56/84 (66%), Gaps = 8/84 (9%)
Query: 217 IRGIGPKRAIELLYSFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILE--NIDT 274
+ G+G +R FIDLCILLGCDY D I +GP A++LI+EH ++EK++E D
Sbjct: 213 LEGLGMERK-----QFIDLCILLGCDYLDPIPKVGPSTALKLIREHGTLEKVVEWMKADP 267
Query: 275 K-KYTVPEGWLYKEARELFRHPEI 297
K +Y +PE W +++AR LF P++
Sbjct: 268 KGRYQIPEDWPFEDARTLFFEPDV 291
Score = 56.2 bits (134), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 25/61 (40%), Positives = 40/61 (65%), Gaps = 2/61 (3%)
Query: 409 LKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSTTTQGRLDSFFTI--RREEKRK 466
KW PD +GL+++L +K F+EDR+R+ KL K T+ Q R++ FF I + EE++K
Sbjct: 301 FKWDKPDIEGLIQFLVHEKGFSEDRVRSAGTKLEKNMKTSQQARIEGFFKILPKTEEEKK 360
Query: 467 S 467
+
Sbjct: 361 A 361
Score = 56.2 bits (134), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 25/61 (40%), Positives = 40/61 (65%), Gaps = 2/61 (3%)
Query: 3 LKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSSTTQGRLDSFFTI--RREEKRK 60
KW PD +GL+++L +K F+EDR+R+ KL K ++ Q R++ FF I + EE++K
Sbjct: 301 FKWDKPDIEGLIQFLVHEKGFSEDRVRSAGTKLEKNMKTSQQARIEGFFKILPKTEEEKK 360
Query: 61 A 61
A
Sbjct: 361 A 361
>gi|340052549|emb|CCC46830.1| putative flap endonuclease-1 (FEN-1), fragment [Trypanosoma vivax
Y486]
Length = 393
Score = 169 bits (429), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 78/143 (54%), Positives = 104/143 (72%)
Query: 60 KAPCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVL 119
+AP EAEAQCA +VK K +A TEDMDALTFG+ I+LRH+T+SEA+K P+ EFHL+ +L
Sbjct: 158 QAPSEAEAQCAELVKKNKAWAVGTEDMDALTFGAPIMLRHLTYSEAKKRPIAEFHLDDIL 217
Query: 120 EGMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEG 179
+ ++ E+F+DLCILLGCDY I GIGP +A E IK+ SIE +E++D+ K+ VPE
Sbjct: 218 QTSGMTMEQFVDLCILLGCDYVPKIPGIGPHKAWEGIKKFHSIEAFIESLDSAKHVVPED 277
Query: 180 WLYKEARELFRHPEVADPETIEF 202
+ Y EAR+ F PEV E +E
Sbjct: 278 FHYSEARQFFIAPEVIPGEEVEI 300
Score = 115 bits (289), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 61/115 (53%), Positives = 81/115 (70%), Gaps = 11/115 (9%)
Query: 304 ELVADVAPSSIRE-------SRKICIDASMSLYQFLIAVRS----EGNQLMSVDGEPTSH 352
+L+ D PS+I+E R+I IDASM++YQFLIA+RS +G +L + GE TSH
Sbjct: 8 KLLYDKTPSAIKEQELQCYFGRRIAIDASMAIYQFLIALRSFQDGQGVELTNDMGEVTSH 67
Query: 353 LMGTFYRTIRLVEHGLKPIYVFDGKPPTLKSGELNKRMEKREDAQKALAKAQEQG 407
L G F+RT+R+V+ GL+PIYVFDGK PTLKS EL R +K +DA + KAQE+G
Sbjct: 68 LNGLFFRTLRMVDEGLRPIYVFDGKAPTLKSKELQNRRQKADDAIQKFKKAQEEG 122
Score = 84.7 bits (208), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 38/74 (51%), Positives = 51/74 (68%)
Query: 232 FIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGWLYKEAREL 291
F+DLCILLGCDY I GIGP +A E IK+ SIE +E++D+ K+ VPE + Y EAR+
Sbjct: 227 FVDLCILLGCDYVPKIPGIGPHKAWEGIKKFHSIEAFIESLDSAKHVVPEDFHYSEARQF 286
Query: 292 FRHPEIADPETIEL 305
F PE+ E +E+
Sbjct: 287 FIAPEVIPGEEVEI 300
Score = 58.9 bits (141), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 27/65 (41%), Positives = 40/65 (61%), Gaps = 1/65 (1%)
Query: 3 LKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSSTTQGRLDSFFTIRREEKRKAP 62
+++ +PDE+GL+++L +K F DR+ G ++L A TQGRLD FF I + R P
Sbjct: 300 IQFREPDEEGLIQFLVNEKRFNRDRVEKGIQRLRNAIGKKTQGRLDQFFVITK-PVRAPP 358
Query: 63 CEAEA 67
EA A
Sbjct: 359 AEAPA 363
Score = 56.2 bits (134), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 23/57 (40%), Positives = 38/57 (66%)
Query: 405 EQGKLKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSTTTQGRLDSFFTIRR 461
E+ ++++ +PDE+GL+++L +K F DR+ G ++L A TQGRLD FF I +
Sbjct: 296 EEVEIQFREPDEEGLIQFLVNEKRFNRDRVEKGIQRLRNAIGKKTQGRLDQFFVITK 352
>gi|149239008|ref|XP_001525380.1| structure-specific endonuclease RAD27 [Lodderomyces elongisporus
NRRL YB-4239]
gi|317374907|sp|A5E121.1|FEN1_LODEL RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|146450873|gb|EDK45129.1| structure-specific endonuclease RAD27 [Lodderomyces elongisporus
NRRL YB-4239]
Length = 384
Score = 169 bits (429), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 77/146 (52%), Positives = 106/146 (72%), Gaps = 4/146 (2%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVLE 120
APCEAEAQCA + + GKV+A A+EDMD L + LLRH+TF+EARK+P+ + ++ ++
Sbjct: 156 APCEAEAQCAELARGGKVFAAASEDMDTLCYEPPQLLRHLTFAEARKMPIDQITYKEAIQ 215
Query: 121 GMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKIL----ENIDTKKYTV 176
G++++ E+FIDLCILLGCDYC++I+G+GP A +LIKEH S++ I+ EN D KY V
Sbjct: 216 GLDMTKEQFIDLCILLGCDYCETIKGVGPVTAYKLIKEHGSLDNIVKYLQENPDKTKYKV 275
Query: 177 PEGWLYKEARELFRHPEVADPETIEF 202
PE W Y EAR+LF PEV +E
Sbjct: 276 PENWPYNEARQLFMKPEVLPALEVEL 301
Score = 121 bits (303), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 61/105 (58%), Positives = 78/105 (74%), Gaps = 8/105 (7%)
Query: 304 ELVADVAPSSIRE-------SRKICIDASMSLYQFLIAVR-SEGNQLMSVDGEPTSHLMG 355
+L+ + +P + +E RK+ IDASM LYQFLIAVR S+G QL + +GE TSHL G
Sbjct: 8 QLIKEHSPHAYKEFELKNLFGRKVAIDASMCLYQFLIAVRQSDGQQLTNDEGETTSHLSG 67
Query: 356 TFYRTIRLVEHGLKPIYVFDGKPPTLKSGELNKRMEKREDAQKAL 400
FYRTIR+VE+ +KP+YVFDGKPP LK GEL KR+ KRE+AQK +
Sbjct: 68 IFYRTIRMVENNIKPVYVFDGKPPVLKGGELEKRLLKREEAQKQI 112
Score = 94.7 bits (234), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 52/126 (41%), Positives = 72/126 (57%), Gaps = 15/126 (11%)
Query: 184 EARELFRHPEVADPETIEFIDLCILLGCDYCDSIRGIGPKRAIELLYSFIDLCILLGCDY 243
E +L RH A+ + + Y ++I+G+ + FIDLCILLGCDY
Sbjct: 187 EPPQLLRHLTFAEARKMPIDQIT------YKEAIQGLDMTKE-----QFIDLCILLGCDY 235
Query: 244 CDSIRGIGPKRAIELIKEHRSIEKIL----ENIDTKKYTVPEGWLYKEARELFRHPEIAD 299
C++I+G+GP A +LIKEH S++ I+ EN D KY VPE W Y EAR+LF PE+
Sbjct: 236 CETIKGVGPVTAYKLIKEHGSLDNIVKYLQENPDKTKYKVPENWPYNEARQLFMKPEVLP 295
Query: 300 PETIEL 305
+EL
Sbjct: 296 ALEVEL 301
Score = 69.3 bits (168), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 30/60 (50%), Positives = 42/60 (70%)
Query: 3 LKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSSTTQGRLDSFFTIRREEKRKAP 62
LKW +PD DGL++Y+ +K F+EDRIR+GA+KL K + QGRLD FFT+ + +P
Sbjct: 301 LKWKEPDLDGLIEYMVKNKGFSEDRIRSGAEKLKKGLKAGIQGRLDGFFTVVPKYSNTSP 360
Score = 68.9 bits (167), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 29/51 (56%), Positives = 38/51 (74%)
Query: 409 LKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSTTTQGRLDSFFTI 459
LKW +PD DGL++Y+ +K F+EDRIR+GA+KL K QGRLD FFT+
Sbjct: 301 LKWKEPDLDGLIEYMVKNKGFSEDRIRSGAEKLKKGLKAGIQGRLDGFFTV 351
>gi|50310391|ref|XP_455215.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
gi|74605424|sp|Q6CLH4.1|FEN1_KLULA RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|49644351|emb|CAG97923.1| KLLA0F02992p [Kluyveromyces lactis]
Length = 381
Score = 169 bits (428), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 76/145 (52%), Positives = 108/145 (74%), Gaps = 5/145 (3%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVLE 120
AP EAEAQCA + K+GKV+A A+EDMD L + + +LLRH+TFSEARKLP+QEF + +
Sbjct: 153 APAEAEAQCAELAKSGKVFAAASEDMDTLCYQTPVLLRHLTFSEARKLPIQEFDTDVIYN 212
Query: 121 GMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILE-----NIDTKKYT 175
++L+ +FIDL I+LGCDYC+ I+G+GP A++LIKEH S+E I+E +I + ++
Sbjct: 213 TLDLTQTQFIDLGIILGCDYCEGIKGVGPVNALKLIKEHGSLEAIVEKFENGDISSGRWK 272
Query: 176 VPEGWLYKEARELFRHPEVADPETI 200
+PEGW +KEAR+LF P+V E +
Sbjct: 273 IPEGWQFKEARDLFMQPDVIPSEEV 297
Score = 122 bits (307), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 61/113 (53%), Positives = 80/113 (70%), Gaps = 8/113 (7%)
Query: 305 LVADVAPSSIR-------ESRKICIDASMSLYQFLIAVRS-EGNQLMSVDGEPTSHLMGT 356
L+++ P++I+ RK+ IDASMSLYQFLIAVR +G QL DGE TSHLMG
Sbjct: 9 LISEQVPNAIKSRDIKYFHGRKVAIDASMSLYQFLIAVRQQDGVQLAGEDGETTSHLMGM 68
Query: 357 FYRTIRLVEHGLKPIYVFDGKPPTLKSGELNKRMEKREDAQKALAKAQEQGKL 409
FYRT+R+++HG+KP YVFDG PP LK EL+KR +RED + L +A EQ ++
Sbjct: 69 FYRTLRMIDHGIKPCYVFDGSPPELKKYELDKRKVRREDTEAKLKEATEQAEI 121
Score = 90.1 bits (222), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 39/79 (49%), Positives = 57/79 (72%), Gaps = 5/79 (6%)
Query: 232 FIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILE-----NIDTKKYTVPEGWLYK 286
FIDL I+LGCDYC+ I+G+GP A++LIKEH S+E I+E +I + ++ +PEGW +K
Sbjct: 221 FIDLGIILGCDYCEGIKGVGPVNALKLIKEHGSLEAIVEKFENGDISSGRWKIPEGWQFK 280
Query: 287 EARELFRHPEIADPETIEL 305
EAR+LF P++ E + L
Sbjct: 281 EARDLFMQPDVIPSEEVTL 299
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 38/58 (65%)
Query: 1 MTLKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSSTTQGRLDSFFTIRREEK 58
+TLKW +P + L++++ +K F EDRI++G ++L K Q RLDSFF I+ + K
Sbjct: 297 VTLKWEEPKAEELIEFMVKEKGFNEDRIKSGIERLRKGLKVGVQKRLDSFFKIQPKTK 354
Score = 53.5 bits (127), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 38/60 (63%)
Query: 405 EQGKLKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSTTTQGRLDSFFTIRREEK 464
E+ LKW +P + L++++ +K F EDRI++G ++L K Q RLDSFF I+ + K
Sbjct: 295 EEVTLKWEEPKAEELIEFMVKEKGFNEDRIKSGIERLRKGLKVGVQKRLDSFFKIQPKTK 354
>gi|401841744|gb|EJT44085.1| RAD27-like protein [Saccharomyces kudriavzevii IFO 1802]
Length = 380
Score = 169 bits (428), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 80/147 (54%), Positives = 108/147 (73%), Gaps = 5/147 (3%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVLE 120
AP EAEAQCA + K GKVYA A+EDMD L + + LLRH+TFSEA+K P+ E E VL
Sbjct: 153 APTEAEAQCAELAKKGKVYAAASEDMDTLCYRTPFLLRHLTFSEAKKEPIHEIDTELVLR 212
Query: 121 GMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTK-----KYT 175
G++L+ E+F+DLCI+LGCDYC+SIRG+GP A++L++ H SIEKI+E I+++ K+
Sbjct: 213 GLDLTIEQFVDLCIMLGCDYCESIRGVGPVTALKLMRTHGSIEKIIEFIESEESSNTKWK 272
Query: 176 VPEGWLYKEARELFRHPEVADPETIEF 202
+P+ W YK+AR LF PEV D I+
Sbjct: 273 IPDDWPYKQARMLFLDPEVIDGNEIDL 299
Score = 124 bits (310), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 61/107 (57%), Positives = 81/107 (75%), Gaps = 8/107 (7%)
Query: 305 LVADVAPSSIRES-------RKICIDASMSLYQFLIAVRS-EGNQLMSVDGEPTSHLMGT 356
++++ PS+IR+S RK+ IDASMSLYQFLIAVR +G QL + GE TSHLMG
Sbjct: 9 IISEHVPSAIRKSDIKSFFGRKVAIDASMSLYQFLIAVRQQDGGQLTNEAGETTSHLMGM 68
Query: 357 FYRTIRLVEHGLKPIYVFDGKPPTLKSGELNKRMEKREDAQKALAKA 403
FYRT+R++++G+KP YVFDGKPP +KS EL KR +RE+ +K LA+A
Sbjct: 69 FYRTLRMIDNGIKPCYVFDGKPPEMKSHELTKRSSRREETEKKLAEA 115
Score = 94.7 bits (234), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 69/192 (35%), Positives = 98/192 (51%), Gaps = 40/192 (20%)
Query: 126 HEEFIDLCILLGCDYCDSIRGIGPKRA----IELIKEHRSIEKILENIDTKKYTVPEGWL 181
+EE L L+G Y I P A EL K+ + E++DT Y P
Sbjct: 136 NEEAQKLLGLMGVPYI-----IAPTEAEAQCAELAKKGKVYAAASEDMDTLCYRTPF--- 187
Query: 182 YKEARELFRHPEV--ADPETIEFIDLCILLGCDYCDSIRGIGPKRAIEL-LYSFIDLCIL 238
L RH A E I ID ++L R ++L + F+DLCI+
Sbjct: 188 ------LLRHLTFSEAKKEPIHEIDTELVL--------------RGLDLTIEQFVDLCIM 227
Query: 239 LGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTK-----KYTVPEGWLYKEARELFR 293
LGCDYC+SIRG+GP A++L++ H SIEKI+E I+++ K+ +P+ W YK+AR LF
Sbjct: 228 LGCDYCESIRGVGPVTALKLMRTHGSIEKIIEFIESEESSNTKWKIPDDWPYKQARMLFL 287
Query: 294 HPEIADPETIEL 305
PE+ D I+L
Sbjct: 288 DPEVIDGNEIDL 299
Score = 60.1 bits (144), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 25/51 (49%), Positives = 35/51 (68%)
Query: 3 LKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSSTTQGRLDSFFTI 53
LKWS P E L++YLC +K F+E+R+++G +L K S QGRLD FF +
Sbjct: 299 LKWSPPKEKELIEYLCNEKKFSEERVKSGIARLKKGLKSGIQGRLDGFFQV 349
Score = 59.3 bits (142), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 24/51 (47%), Positives = 35/51 (68%)
Query: 409 LKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSTTTQGRLDSFFTI 459
LKWS P E L++YLC +K F+E+R+++G +L K + QGRLD FF +
Sbjct: 299 LKWSPPKEKELIEYLCNEKKFSEERVKSGIARLKKGLKSGIQGRLDGFFQV 349
>gi|164426998|ref|XP_001728355.1| DNA-repair protein rad2 [Neurospora crassa OR74A]
gi|157071561|gb|EDO65264.1| DNA-repair protein rad2 [Neurospora crassa OR74A]
Length = 396
Score = 169 bits (428), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 80/137 (58%), Positives = 104/137 (75%), Gaps = 3/137 (2%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVLE 120
AP EAEAQCA + +AGKVYA A+EDMD L F + ILLRH+TFSE RK P+QE HLEKVLE
Sbjct: 157 APTEAEAQCAVLARAGKVYAAASEDMDTLCFNAPILLRHLTFSEQRKEPIQEIHLEKVLE 216
Query: 121 GMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILE--NIDTK-KYTVP 177
G+ + ++FIDLCILLGCDY D I +GP A++LI+EH ++EK++E D K +Y +P
Sbjct: 217 GLGMERKQFIDLCILLGCDYLDPIPKVGPSTALKLIREHGTLEKVVEWMKADPKGRYQIP 276
Query: 178 EGWLYKEARELFRHPEV 194
E W +++AR LF P+V
Sbjct: 277 EDWPFEDARTLFFEPDV 293
Score = 124 bits (310), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 60/112 (53%), Positives = 83/112 (74%), Gaps = 9/112 (8%)
Query: 305 LVADVAPSSIRES-------RKICIDA--SMSLYQFLIAVRSEGNQLMSVDGEPTSHLMG 355
++ D AP +I+E RK+ I + SMS+Y FLIAVRS+G QLM+ GE TSHLMG
Sbjct: 9 VIKDEAPDAIKEGEIKNQFGRKVAIVSFISMSIYSFLIAVRSDGQQLMNEAGETTSHLMG 68
Query: 356 TFYRTIRLVEHGLKPIYVFDGKPPTLKSGELNKRMEKREDAQKALAKAQEQG 407
FYRT+R+V++G+KP+YVFDG PP LKSGEL KR +++++A + L +A+E G
Sbjct: 69 MFYRTLRMVDNGIKPLYVFDGAPPKLKSGELAKRFQRKQEATEGLEEAKETG 120
Score = 77.8 bits (190), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 38/84 (45%), Positives = 56/84 (66%), Gaps = 8/84 (9%)
Query: 217 IRGIGPKRAIELLYSFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILE--NIDT 274
+ G+G +R FIDLCILLGCDY D I +GP A++LI+EH ++EK++E D
Sbjct: 215 LEGLGMERK-----QFIDLCILLGCDYLDPIPKVGPSTALKLIREHGTLEKVVEWMKADP 269
Query: 275 K-KYTVPEGWLYKEARELFRHPEI 297
K +Y +PE W +++AR LF P++
Sbjct: 270 KGRYQIPEDWPFEDARTLFFEPDV 293
Score = 56.6 bits (135), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 25/61 (40%), Positives = 40/61 (65%), Gaps = 2/61 (3%)
Query: 409 LKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSTTTQGRLDSFFTI--RREEKRK 466
KW PD +GL+++L +K F+EDR+R+ KL K T+ Q R++ FF I + EE++K
Sbjct: 303 FKWDKPDIEGLIQFLVHEKGFSEDRVRSAGTKLEKNMKTSQQARIEGFFKILPKTEEEKK 362
Query: 467 S 467
+
Sbjct: 363 A 363
Score = 56.2 bits (134), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 25/61 (40%), Positives = 40/61 (65%), Gaps = 2/61 (3%)
Query: 3 LKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSSTTQGRLDSFFTI--RREEKRK 60
KW PD +GL+++L +K F+EDR+R+ KL K ++ Q R++ FF I + EE++K
Sbjct: 303 FKWDKPDIEGLIQFLVHEKGFSEDRVRSAGTKLEKNMKTSQQARIEGFFKILPKTEEEKK 362
Query: 61 A 61
A
Sbjct: 363 A 363
>gi|363806970|ref|NP_001242313.1| flap endonuclease 1 [Glycine max]
gi|317376195|sp|C6TEX6.1|FEN1_SOYBN RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|255640175|gb|ACU20378.1| unknown [Glycine max]
Length = 382
Score = 169 bits (428), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 75/134 (55%), Positives = 102/134 (76%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVLE 120
AP EAEAQCAA+ KAGKVY +EDMD+LTFG+ LRH+ ++K+PV EF + K+LE
Sbjct: 156 APSEAEAQCAALCKAGKVYGVVSEDMDSLTFGAPKFLRHLMDPSSKKIPVMEFEVAKILE 215
Query: 121 GMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGW 180
+ ++ ++FIDLCIL GCDYCDSIRGIG A++LI++H SIE I EN++ ++Y +P+ W
Sbjct: 216 ELNMTMDQFIDLCILSGCDYCDSIRGIGGLTALKLIRQHGSIENIPENLNKERYQIPDNW 275
Query: 181 LYKEARELFRHPEV 194
Y+EAR LF+ P V
Sbjct: 276 PYQEARRLFKEPLV 289
Score = 114 bits (284), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 60/110 (54%), Positives = 78/110 (70%), Gaps = 8/110 (7%)
Query: 304 ELVADVAPSSIRES-------RKICIDASMSLYQFLIAVRSEGNQLMSVD-GEPTSHLMG 355
+L+AD AP S++E+ RKI IDASMS+YQFLI V G ++++ + GE TSHL G
Sbjct: 8 KLLADNAPKSMKENKFESYFGRKIAIDASMSIYQFLIVVGRSGTEMLTNEAGEVTSHLQG 67
Query: 356 TFYRTIRLVEHGLKPIYVFDGKPPTLKSGELNKRMEKREDAQKALAKAQE 405
F RTIRL+E G+KP+YVFDGKPP LK EL KR KR +A + L++A E
Sbjct: 68 MFSRTIRLLEAGIKPVYVFDGKPPDLKKQELAKRYSKRAEATEDLSEALE 117
Score = 92.8 bits (229), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 39/64 (60%), Positives = 51/64 (79%)
Query: 232 FIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGWLYKEAREL 291
FIDLCIL GCDYCDSIRGIG A++LI++H SIE I EN++ ++Y +P+ W Y+EAR L
Sbjct: 224 FIDLCILSGCDYCDSIRGIGGLTALKLIRQHGSIENIPENLNKERYQIPDNWPYQEARRL 283
Query: 292 FRHP 295
F+ P
Sbjct: 284 FKEP 287
Score = 56.2 bits (134), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 35/51 (68%)
Query: 1 MTLKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSSTTQGRLDSFF 51
+ +KWS PDE+GL+ +L + F DR+ +K+ A++ ++QGRL+SFF
Sbjct: 296 LDIKWSSPDEEGLITFLVNENGFNRDRVTKAIEKIKVAKNKSSQGRLESFF 346
Score = 55.8 bits (133), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 21/49 (42%), Positives = 34/49 (69%)
Query: 409 LKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSTTTQGRLDSFF 457
+KWS PDE+GL+ +L + F DR+ +K+ A++ ++QGRL+SFF
Sbjct: 298 IKWSSPDEEGLITFLVNENGFNRDRVTKAIEKIKVAKNKSSQGRLESFF 346
>gi|402080846|gb|EJT75991.1| DNA-repair protein rad2 [Gaeumannomyces graminis var. tritici
R3-111a-1]
Length = 394
Score = 169 bits (428), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 77/136 (56%), Positives = 105/136 (77%), Gaps = 2/136 (1%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVLE 120
AP EAEAQCAA+ +AGKV+A A+EDMD L F S +LLRH+TFSE RK P+ E H++KVLE
Sbjct: 155 APTEAEAQCAALARAGKVFAAASEDMDTLCFDSPVLLRHLTFSEQRKEPILEIHVDKVLE 214
Query: 121 GMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTK--KYTVPE 178
G+ + ++F+DLCILLGCDY D I +GP A++LI+EH S+E I+E + KYTVP+
Sbjct: 215 GLNMERKQFVDLCILLGCDYLDPIPKVGPTTALKLIREHGSLETIVEKMKKGDLKYTVPD 274
Query: 179 GWLYKEARELFRHPEV 194
W +++AR+LF +P+V
Sbjct: 275 DWPFEDARDLFFNPDV 290
Score = 123 bits (308), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 56/110 (50%), Positives = 81/110 (73%), Gaps = 7/110 (6%)
Query: 305 LVADVAPSSIRES-------RKICIDASMSLYQFLIAVRSEGNQLMSVDGEPTSHLMGTF 357
++ + AP +++ RK+ IDASMS+Y FLIAVRS G L + DG+ TSHLMG F
Sbjct: 9 IIKENAPDAVKSGEIKNHFGRKVAIDASMSIYSFLIAVRSNGEVLTNEDGQTTSHLMGMF 68
Query: 358 YRTIRLVEHGLKPIYVFDGKPPTLKSGELNKRMEKREDAQKALAKAQEQG 407
YRT+R+V++G+KP+YVFDG PP LKSGEL +R +++++A + L +A+E G
Sbjct: 69 YRTLRMVDNGIKPLYVFDGAPPKLKSGELARRYQRKQEALEGLEEARETG 118
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 35/68 (51%), Positives = 51/68 (75%), Gaps = 2/68 (2%)
Query: 232 FIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTK--KYTVPEGWLYKEAR 289
F+DLCILLGCDY D I +GP A++LI+EH S+E I+E + KYTVP+ W +++AR
Sbjct: 223 FVDLCILLGCDYLDPIPKVGPTTALKLIREHGSLETIVEKMKKGDLKYTVPDDWPFEDAR 282
Query: 290 ELFRHPEI 297
+LF +P++
Sbjct: 283 DLFFNPDV 290
Score = 58.5 bits (140), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 28/60 (46%), Positives = 39/60 (65%), Gaps = 2/60 (3%)
Query: 409 LKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSTTTQGRLDSFF--TIRREEKRK 466
KW PD DGL+ +L +K F+EDR+R+GA +L K T+ Q RL+ FF R EE++K
Sbjct: 300 FKWEKPDIDGLINFLVTEKGFSEDRVRSGAARLEKNLKTSQQQRLEGFFKPVARTEEQQK 359
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/71 (40%), Positives = 42/71 (59%), Gaps = 7/71 (9%)
Query: 3 LKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSSTTQGRLDSFFTI-------RR 55
KW PD DGL+ +L +K F+EDR+R+GA +L K ++ Q RL+ FF ++
Sbjct: 300 FKWEKPDIDGLINFLVTEKGFSEDRVRSGAARLEKNLKTSQQQRLEGFFKPVARTEEQQK 359
Query: 56 EEKRKAPCEAE 66
E KRK +AE
Sbjct: 360 EHKRKLEVKAE 370
>gi|348688657|gb|EGZ28471.1| hypothetical protein PHYSODRAFT_294028 [Phytophthora sojae]
Length = 390
Score = 169 bits (427), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 83/163 (50%), Positives = 107/163 (65%), Gaps = 18/163 (11%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVLE 120
APCEAEA CA + K G+VYA TEDMDALTFG +L R +T S A+K+P+ E LE+ L+
Sbjct: 161 APCEAEASCAELAKGGRVYAAGTEDMDALTFGVPVLYRRLTVSPAKKIPILEIRLERALQ 220
Query: 121 GMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENID---TKKYTVP 177
+EL+ E+F+DLCIL GCDYCDSIRG+GPK+A IKEH++IE LE + +K +P
Sbjct: 221 ELELTQEQFVDLCILCGCDYCDSIRGVGPKKAFAGIKEHKNIENFLEALQKNKSKGVVIP 280
Query: 178 EGWL-----YKEARELFRHPEVA----------DPETIEFIDL 205
+ WL YK ARE+F PEV DP+ E +D
Sbjct: 281 DEWLGENPIYKSAREMFIKPEVVNAKEAELKWRDPQETELLDF 323
Score = 124 bits (311), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 64/118 (54%), Positives = 84/118 (71%), Gaps = 13/118 (11%)
Query: 303 IELVADVAPSSIRESRK--------ICIDASMSLYQFLIAVRSE-----GNQLMSVDGEP 349
++L+ + APS I+E K + IDASM+LYQFLIA+RS L + DGE
Sbjct: 7 MKLLQEEAPSCIKEVEKMSALAGHAVAIDASMALYQFLIAIRSADGGGPSQALTNADGEV 66
Query: 350 TSHLMGTFYRTIRLVEHGLKPIYVFDGKPPTLKSGELNKRMEKREDAQKALAKAQEQG 407
TSHL G F RTIR++E+GLKP+YVFDGKPP +KSGEL KR ++R++AQKAL +A E+G
Sbjct: 67 TSHLQGMFSRTIRMMENGLKPVYVFDGKPPVMKSGELAKRSDRRQEAQKALEEATEKG 124
Score = 88.6 bits (218), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 42/82 (51%), Positives = 55/82 (67%), Gaps = 8/82 (9%)
Query: 232 FIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENID---TKKYTVPEGWL---- 284
F+DLCIL GCDYCDSIRG+GPK+A IKEH++IE LE + +K +P+ WL
Sbjct: 229 FVDLCILCGCDYCDSIRGVGPKKAFAGIKEHKNIENFLEALQKNKSKGVVIPDEWLGENP 288
Query: 285 -YKEARELFRHPEIADPETIEL 305
YK ARE+F PE+ + + EL
Sbjct: 289 IYKSAREMFIKPEVVNAKEAEL 310
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/66 (43%), Positives = 40/66 (60%), Gaps = 5/66 (7%)
Query: 3 LKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSSTTQGRLDSFFTI-----RREE 57
LKW DP E L+ +LC F EDR+ + +L K++S+ +Q RLDSFFT+ +
Sbjct: 310 LKWRDPQETELLDFLCKKHGFQEDRVLSAITRLKKSKSTQSQKRLDSFFTVLPSAGGSAK 369
Query: 58 KRKAPC 63
KRKAP
Sbjct: 370 KRKAPV 375
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/55 (45%), Positives = 37/55 (67%)
Query: 405 EQGKLKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSTTTQGRLDSFFTI 459
++ +LKW DP E L+ +LC F EDR+ + +L K++ST +Q RLDSFFT+
Sbjct: 306 KEAELKWRDPQETELLDFLCKKHGFQEDRVLSAITRLKKSKSTQSQKRLDSFFTV 360
>gi|323354056|gb|EGA85902.1| Rad27p [Saccharomyces cerevisiae VL3]
Length = 382
Score = 169 bits (427), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 82/147 (55%), Positives = 105/147 (71%), Gaps = 5/147 (3%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVLE 120
AP EAEAQCA + K GKVYA A+EDMD L + + LLRH+TFSEA+K P+ E E VL
Sbjct: 153 APTEAEAQCAELAKKGKVYAAASEDMDTLCYRTPFLLRHLTFSEAKKEPIHEIDTELVLR 212
Query: 121 GMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDT-----KKYT 175
G++L+ E+F+DLCI+LGCDYC+SIR +GP A++LIK H SIEKI+E I++ K+
Sbjct: 213 GLDLTIEQFVDLCIMLGCDYCESIRXVGPVTALKLIKTHGSIEKIVEFIESGESNNTKWK 272
Query: 176 VPEGWLYKEARELFRHPEVADPETIEF 202
+PE W YK+AR LF PEV D I
Sbjct: 273 IPEDWPYKQARMLFLDPEVIDGNEINL 299
Score = 122 bits (305), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 61/107 (57%), Positives = 80/107 (74%), Gaps = 8/107 (7%)
Query: 305 LVADVAPSSIRES-------RKICIDASMSLYQFLIAVRS-EGNQLMSVDGEPTSHLMGT 356
++++ PS+IR+S RK+ IDASMSLYQFLIAVR +G QL + GE TSHLMG
Sbjct: 9 IISEHVPSAIRKSDIKSFFGRKVAIDASMSLYQFLIAVRQQDGGQLTNEAGETTSHLMGM 68
Query: 357 FYRTIRLVEHGLKPIYVFDGKPPTLKSGELNKRMEKREDAQKALAKA 403
FYRT+R++++G+KP YVFDGKPP LKS EL KR +R + +K LA+A
Sbjct: 69 FYRTLRMIDNGIKPCYVFDGKPPDLKSHELTKRSSRRVETEKKLAEA 115
Score = 94.0 bits (232), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 71/192 (36%), Positives = 95/192 (49%), Gaps = 40/192 (20%)
Query: 126 HEEFIDLCILLGCDYCDSIRGIGPKRA----IELIKEHRSIEKILENIDTKKYTVPEGWL 181
+EE L L+G Y I P A EL K+ + E++DT Y P
Sbjct: 136 NEEAQKLLGLMGIPYI-----IAPTEAEAQCAELAKKGKVYAAASEDMDTLCYRTPF--- 187
Query: 182 YKEARELFRHPEV--ADPETIEFIDLCILLGCDYCDSIRGIGPKRAIEL-LYSFIDLCIL 238
L RH A E I ID ++L R ++L + F+DLCI+
Sbjct: 188 ------LLRHLTFSEAKKEPIHEIDTELVL--------------RGLDLTIEQFVDLCIM 227
Query: 239 LGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDT-----KKYTVPEGWLYKEARELFR 293
LGCDYC+SIR +GP A++LIK H SIEKI+E I++ K+ +PE W YK+AR LF
Sbjct: 228 LGCDYCESIRXVGPVTALKLIKTHGSIEKIVEFIESGESNNTKWKIPEDWPYKQARMLFL 287
Query: 294 HPEIADPETIEL 305
PE+ D I L
Sbjct: 288 DPEVIDGNEINL 299
Score = 62.0 bits (149), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 26/53 (49%), Positives = 36/53 (67%)
Query: 1 MTLKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSSTTQGRLDSFFTI 53
+ LKWS P E L++YLC DK F+E+R+++G +L K S QGRLD FF +
Sbjct: 297 INLKWSPPKEKELIEYLCDDKKFSEERVKSGISRLKKGLKSGIQGRLDGFFQV 349
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/51 (49%), Positives = 35/51 (68%)
Query: 409 LKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSTTTQGRLDSFFTI 459
LKWS P E L++YLC DK F+E+R+++G +L K + QGRLD FF +
Sbjct: 299 LKWSPPKEKELIEYLCDDKKFSEERVKSGISRLKKGLKSGIQGRLDGFFQV 349
>gi|403216014|emb|CCK70512.1| hypothetical protein KNAG_0E02520 [Kazachstania naganishii CBS
8797]
Length = 380
Score = 169 bits (427), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 81/143 (56%), Positives = 106/143 (74%), Gaps = 3/143 (2%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVLE 120
AP EAEAQCA + K GKVYA A+EDMD L + + LLRH+TFSEA+K PVQE VL+
Sbjct: 153 APGEAEAQCAELAKGGKVYAAASEDMDTLCYKTPYLLRHLTFSEAKKEPVQEIDTLAVLD 212
Query: 121 GMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDT---KKYTVP 177
MEL+ E+F+DL I+LGCDYC+SIRG+GP A++LI+EH+S+E I++ ID+ +K+ VP
Sbjct: 213 AMELTIEQFVDLGIMLGCDYCESIRGVGPVTALKLIREHKSLEGIVQYIDSGSNEKWKVP 272
Query: 178 EGWLYKEARELFRHPEVADPETI 200
E W YKE R+LF P+V I
Sbjct: 273 ENWPYKEVRKLFLDPDVTPASEI 295
Score = 114 bits (284), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 56/109 (51%), Positives = 76/109 (69%), Gaps = 8/109 (7%)
Query: 305 LVADVAPSSIRES-------RKICIDASMSLYQFLIAVRS-EGNQLMSVDGEPTSHLMGT 356
++ + AP ++R S RK+ IDASMSLYQFLIAVR +G QL +G TSHLMG
Sbjct: 9 IIMESAPLAVRRSEMKAFFGRKVAIDASMSLYQFLIAVRQQDGGQLTDAEGGTTSHLMGM 68
Query: 357 FYRTIRLVEHGLKPIYVFDGKPPTLKSGELNKRMEKREDAQKALAKAQE 405
FYRT+R+V++G+KP YVFDG PP LK EL KR ++R + ++ L +A +
Sbjct: 69 FYRTLRMVDNGIKPCYVFDGAPPALKQHELGKRTQRRAETEQRLKEATD 117
Score = 97.1 bits (240), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 67/186 (36%), Positives = 96/186 (51%), Gaps = 30/186 (16%)
Query: 126 HEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGWLYKEA 185
+EE L L+G Y D+ G + EL K + E++DT Y P
Sbjct: 136 NEEAKKLLGLMGVPYVDA-PGEAEAQCAELAKGGKVYAAASEDMDTLCYKTPY------- 187
Query: 186 RELFRHPEV--ADPETIEFIDLCILLGCDYCDSIRGIGPKRAIEL-LYSFIDLCILLGCD 242
L RH A E ++ ID +L A+EL + F+DL I+LGCD
Sbjct: 188 --LLRHLTFSEAKKEPVQEIDTLAVLD--------------AMELTIEQFVDLGIMLGCD 231
Query: 243 YCDSIRGIGPKRAIELIKEHRSIEKILENIDT---KKYTVPEGWLYKEARELFRHPEIAD 299
YC+SIRG+GP A++LI+EH+S+E I++ ID+ +K+ VPE W YKE R+LF P++
Sbjct: 232 YCESIRGVGPVTALKLIREHKSLEGIVQYIDSGSNEKWKVPENWPYKEVRKLFLDPDVTP 291
Query: 300 PETIEL 305
I L
Sbjct: 292 ASEITL 297
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 29/53 (54%), Positives = 38/53 (71%)
Query: 1 MTLKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSSTTQGRLDSFFTI 53
+TLKW P E+ LVKYLCG+K F+E+R+R+G K+L S QGRLD FF +
Sbjct: 295 ITLKWEPPQEEELVKYLCGEKLFSEERVRSGVKRLRAGLKSGVQGRLDGFFKV 347
Score = 64.3 bits (155), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 27/51 (52%), Positives = 36/51 (70%)
Query: 409 LKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSTTTQGRLDSFFTI 459
LKW P E+ LVKYLCG+K F+E+R+R+G K+L + QGRLD FF +
Sbjct: 297 LKWEPPQEEELVKYLCGEKLFSEERVRSGVKRLRAGLKSGVQGRLDGFFKV 347
>gi|156845450|ref|XP_001645616.1| hypothetical protein Kpol_1033p65 [Vanderwaltozyma polyspora DSM
70294]
gi|317376167|sp|A7TJ59.1|FEN1_VANPO RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|156116281|gb|EDO17758.1| hypothetical protein Kpol_1033p65 [Vanderwaltozyma polyspora DSM
70294]
Length = 377
Score = 169 bits (427), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 79/146 (54%), Positives = 109/146 (74%), Gaps = 4/146 (2%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVLE 120
APCEAE+QCA + K GKVYA A+EDMD L + + LLRH+TFSEA+K P+ E E VL+
Sbjct: 153 APCEAESQCAELAKCGKVYAAASEDMDTLCYRTPYLLRHLTFSEAKKEPIHEIDTELVLK 212
Query: 121 GMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDT----KKYTV 176
G++L+ E+F+DL I+LGCDYCDSI+G+GP A++LIKE+ S+EKI+E I++ K+ +
Sbjct: 213 GLDLTLEQFVDLGIMLGCDYCDSIKGVGPVTALKLIKEYGSLEKIIEYIESDSSNSKWKI 272
Query: 177 PEGWLYKEARELFRHPEVADPETIEF 202
P W YK+ARELF P+V + +E
Sbjct: 273 PNDWPYKDARELFLKPDVINGNEVEL 298
Score = 124 bits (312), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 61/111 (54%), Positives = 83/111 (74%), Gaps = 8/111 (7%)
Query: 305 LVADVAPSSIRES-------RKICIDASMSLYQFLIAVRS-EGNQLMSVDGEPTSHLMGT 356
++++ PS++R+S RK+ IDASMSLYQFLIAVR +G QL + GE TSHLMG
Sbjct: 9 IISEHVPSAVRKSDIKTFFGRKVAIDASMSLYQFLIAVRQQDGGQLTNEAGETTSHLMGM 68
Query: 357 FYRTIRLVEHGLKPIYVFDGKPPTLKSGELNKRMEKREDAQKALAKAQEQG 407
FYRT+R++++G+KP YVFDGKPP LKS EL+KR +RE+ +K L +A +Q
Sbjct: 69 FYRTLRMIDNGIKPCYVFDGKPPVLKSHELSKRTARREETEKKLQEATDQA 119
Score = 90.9 bits (224), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 41/81 (50%), Positives = 59/81 (72%), Gaps = 4/81 (4%)
Query: 229 LYSFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDT----KKYTVPEGWL 284
L F+DL I+LGCDYCDSI+G+GP A++LIKE+ S+EKI+E I++ K+ +P W
Sbjct: 218 LEQFVDLGIMLGCDYCDSIKGVGPVTALKLIKEYGSLEKIIEYIESDSSNSKWKIPNDWP 277
Query: 285 YKEARELFRHPEIADPETIEL 305
YK+ARELF P++ + +EL
Sbjct: 278 YKDARELFLKPDVINGNEVEL 298
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 25/51 (49%), Positives = 37/51 (72%)
Query: 3 LKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSSTTQGRLDSFFTI 53
LKW P+E GL+ +LCG+K F+E+R+++G ++L K S QGRLD FF +
Sbjct: 298 LKWQPPNEKGLIDFLCGEKKFSEERVKSGIERLKKGLKSGVQGRLDGFFQV 348
Score = 62.8 bits (151), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 24/51 (47%), Positives = 37/51 (72%)
Query: 409 LKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSTTTQGRLDSFFTI 459
LKW P+E GL+ +LCG+K F+E+R+++G ++L K + QGRLD FF +
Sbjct: 298 LKWQPPNEKGLIDFLCGEKKFSEERVKSGIERLKKGLKSGVQGRLDGFFQV 348
>gi|83773193|dbj|BAE63320.1| unnamed protein product [Aspergillus oryzae RIB40]
Length = 359
Score = 169 bits (427), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 77/137 (56%), Positives = 106/137 (77%), Gaps = 3/137 (2%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVLE 120
AP EAEAQCA + +AGKVYA A+EDMD L F + ILLRH+TFSE RK P+ E HL + LE
Sbjct: 119 APTEAEAQCAVLARAGKVYAAASEDMDTLCFEAPILLRHLTFSEQRKEPILEIHLSRALE 178
Query: 121 GMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDT---KKYTVP 177
G+++ ++FIDLCILLGCDY + I +GP A++LI+E S+EK++E++++ KKY +P
Sbjct: 179 GLDMDRKQFIDLCILLGCDYLEPIPKVGPNTALKLIREFGSLEKVVEHMESDPKKKYVIP 238
Query: 178 EGWLYKEARELFRHPEV 194
E W Y++ARELF +P+V
Sbjct: 239 EDWPYQDARELFLNPDV 255
Score = 107 bits (266), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 48/64 (75%), Positives = 55/64 (85%)
Query: 326 MSLYQFLIAVRSEGNQLMSVDGEPTSHLMGTFYRTIRLVEHGLKPIYVFDGKPPTLKSGE 385
MS+Y FLIAVRSEG QLMS GE TSHLMG FYRT+R+V++G+KP+YVFDG PP LKSGE
Sbjct: 1 MSIYSFLIAVRSEGQQLMSDTGETTSHLMGMFYRTLRMVDNGIKPLYVFDGAPPKLKSGE 60
Query: 386 LNKR 389
L KR
Sbjct: 61 LAKR 64
Score = 84.0 bits (206), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 36/69 (52%), Positives = 54/69 (78%), Gaps = 3/69 (4%)
Query: 232 FIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDT---KKYTVPEGWLYKEA 288
FIDLCILLGCDY + I +GP A++LI+E S+EK++E++++ KKY +PE W Y++A
Sbjct: 187 FIDLCILLGCDYLEPIPKVGPNTALKLIREFGSLEKVVEHMESDPKKKYVIPEDWPYQDA 246
Query: 289 RELFRHPEI 297
RELF +P++
Sbjct: 247 RELFLNPDV 255
Score = 58.9 bits (141), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 28/63 (44%), Positives = 39/63 (61%), Gaps = 1/63 (1%)
Query: 409 LKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSTTTQGRLDSFF-TIRREEKRKS 467
KW PD +GLV++L DK F EDR+RNGA +L K T Q RL+ FF + R ++ K+
Sbjct: 265 FKWEAPDIEGLVEFLVKDKGFNEDRVRNGAARLQKNLKTAQQSRLEGFFKPVARTDEEKA 324
Query: 468 RCQ 470
+
Sbjct: 325 NLK 327
Score = 58.5 bits (140), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 28/60 (46%), Positives = 38/60 (63%), Gaps = 1/60 (1%)
Query: 3 LKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSSTTQGRLDSFF-TIRREEKRKA 61
KW PD +GLV++L DK F EDR+RNGA +L K + Q RL+ FF + R ++ KA
Sbjct: 265 FKWEAPDIEGLVEFLVKDKGFNEDRVRNGAARLQKNLKTAQQSRLEGFFKPVARTDEEKA 324
>gi|344303968|gb|EGW34217.1| hypothetical protein SPAPADRAFT_148774 [Spathaspora passalidarum
NRRL Y-27907]
Length = 377
Score = 169 bits (427), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 75/144 (52%), Positives = 106/144 (73%), Gaps = 4/144 (2%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVLE 120
APCEAEAQCA + + GKV+A A+EDMD L + LLRH+TF+EARK+P+ + + +
Sbjct: 156 APCEAEAQCAELARGGKVFAAASEDMDTLCYEPPYLLRHLTFAEARKMPIDQITYSEAIA 215
Query: 121 GMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTK----KYTV 176
G++++ E+FIDLCILLGCDYC++I+G+GP A +LIKEH S++KI+E I++ K+ V
Sbjct: 216 GLDMTKEQFIDLCILLGCDYCETIKGVGPVTAFKLIKEHGSLDKIVEYINSNPEKTKFKV 275
Query: 177 PEGWLYKEARELFRHPEVADPETI 200
PE W Y EAR+LF PEV + +
Sbjct: 276 PENWPYDEARQLFLKPEVTEASEV 299
Score = 129 bits (324), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 64/114 (56%), Positives = 85/114 (74%), Gaps = 8/114 (7%)
Query: 304 ELVADVAPSSIRE-------SRKICIDASMSLYQFLIAVR-SEGNQLMSVDGEPTSHLMG 355
+L+ + +PS+ +E RK+ IDASM LYQFLIAVR S+G QL + DGE TSHL G
Sbjct: 8 QLIKEHSPSAYKEFQLKNLFGRKVAIDASMCLYQFLIAVRQSDGQQLTNEDGETTSHLSG 67
Query: 356 TFYRTIRLVEHGLKPIYVFDGKPPTLKSGELNKRMEKREDAQKALAKAQEQGKL 409
FYRTIRLVE+ +KP+YVFDGKPP LK GEL KR+++RE+AQK + +++G +
Sbjct: 68 LFYRTIRLVENNIKPVYVFDGKPPVLKGGELEKRLQRREEAQKQMDSIKDEGTV 121
Score = 94.7 bits (234), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 42/78 (53%), Positives = 57/78 (73%), Gaps = 4/78 (5%)
Query: 232 FIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTK----KYTVPEGWLYKE 287
FIDLCILLGCDYC++I+G+GP A +LIKEH S++KI+E I++ K+ VPE W Y E
Sbjct: 224 FIDLCILLGCDYCETIKGVGPVTAFKLIKEHGSLDKIVEYINSNPEKTKFKVPENWPYDE 283
Query: 288 ARELFRHPEIADPETIEL 305
AR+LF PE+ + + L
Sbjct: 284 ARQLFLKPEVTEASEVTL 301
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 27/53 (50%), Positives = 41/53 (77%)
Query: 1 MTLKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSSTTQGRLDSFFTI 53
+TLKW +PD +GL++Y+ +K F+E+RIR+GA+KL K + QGRLD FF++
Sbjct: 299 VTLKWKEPDVEGLIQYMVKEKGFSEERIRSGAEKLKKGLKAGVQGRLDGFFSV 351
Score = 64.7 bits (156), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 26/51 (50%), Positives = 38/51 (74%)
Query: 409 LKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSTTTQGRLDSFFTI 459
LKW +PD +GL++Y+ +K F+E+RIR+GA+KL K QGRLD FF++
Sbjct: 301 LKWKEPDVEGLIQYMVKEKGFSEERIRSGAEKLKKGLKAGVQGRLDGFFSV 351
>gi|238506000|ref|XP_002384202.1| Flap endonuclease Rad27, putative [Aspergillus flavus NRRL3357]
gi|317151109|ref|XP_001824453.2| DNA repair protein rad2 [Aspergillus oryzae RIB40]
gi|317374884|sp|B8NV37.1|FEN1_ASPFN RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|220690316|gb|EED46666.1| Flap endonuclease Rad27, putative [Aspergillus flavus NRRL3357]
gi|391868743|gb|EIT77953.1| 5'-3' exonuclease [Aspergillus oryzae 3.042]
Length = 395
Score = 169 bits (427), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 77/137 (56%), Positives = 106/137 (77%), Gaps = 3/137 (2%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVLE 120
AP EAEAQCA + +AGKVYA A+EDMD L F + ILLRH+TFSE RK P+ E HL + LE
Sbjct: 155 APTEAEAQCAVLARAGKVYAAASEDMDTLCFEAPILLRHLTFSEQRKEPILEIHLSRALE 214
Query: 121 GMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDT---KKYTVP 177
G+++ ++FIDLCILLGCDY + I +GP A++LI+E S+EK++E++++ KKY +P
Sbjct: 215 GLDMDRKQFIDLCILLGCDYLEPIPKVGPNTALKLIREFGSLEKVVEHMESDPKKKYVIP 274
Query: 178 EGWLYKEARELFRHPEV 194
E W Y++ARELF +P+V
Sbjct: 275 EDWPYQDARELFLNPDV 291
Score = 123 bits (308), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 58/93 (62%), Positives = 72/93 (77%), Gaps = 7/93 (7%)
Query: 304 ELVADVAPSSIRES-------RKICIDASMSLYQFLIAVRSEGNQLMSVDGEPTSHLMGT 356
+++A+ AP +I+ RK+ IDASMS+Y FLIAVRSEG QLMS GE TSHLMG
Sbjct: 8 QVIAENAPDAIKAGDIKNHFGRKVAIDASMSIYSFLIAVRSEGQQLMSDTGETTSHLMGM 67
Query: 357 FYRTIRLVEHGLKPIYVFDGKPPTLKSGELNKR 389
FYRT+R+V++G+KP+YVFDG PP LKSGEL KR
Sbjct: 68 FYRTLRMVDNGIKPLYVFDGAPPKLKSGELAKR 100
Score = 84.0 bits (206), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 36/69 (52%), Positives = 54/69 (78%), Gaps = 3/69 (4%)
Query: 232 FIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDT---KKYTVPEGWLYKEA 288
FIDLCILLGCDY + I +GP A++LI+E S+EK++E++++ KKY +PE W Y++A
Sbjct: 223 FIDLCILLGCDYLEPIPKVGPNTALKLIREFGSLEKVVEHMESDPKKKYVIPEDWPYQDA 282
Query: 289 RELFRHPEI 297
RELF +P++
Sbjct: 283 RELFLNPDV 291
Score = 59.3 bits (142), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 28/63 (44%), Positives = 39/63 (61%), Gaps = 1/63 (1%)
Query: 409 LKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSTTTQGRLDSFF-TIRREEKRKS 467
KW PD +GLV++L DK F EDR+RNGA +L K T Q RL+ FF + R ++ K+
Sbjct: 301 FKWEAPDIEGLVEFLVKDKGFNEDRVRNGAARLQKNLKTAQQSRLEGFFKPVARTDEEKA 360
Query: 468 RCQ 470
+
Sbjct: 361 NLK 363
Score = 58.5 bits (140), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 28/60 (46%), Positives = 38/60 (63%), Gaps = 1/60 (1%)
Query: 3 LKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSSTTQGRLDSFF-TIRREEKRKA 61
KW PD +GLV++L DK F EDR+RNGA +L K + Q RL+ FF + R ++ KA
Sbjct: 301 FKWEAPDIEGLVEFLVKDKGFNEDRVRNGAARLQKNLKTAQQSRLEGFFKPVARTDEEKA 360
>gi|302306477|ref|NP_982895.2| ABL052Cp [Ashbya gossypii ATCC 10895]
gi|317374930|sp|Q75DS8.2|FEN1_ASHGO RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|299788534|gb|AAS50719.2| ABL052Cp [Ashbya gossypii ATCC 10895]
gi|374106098|gb|AEY95008.1| FABL052Cp [Ashbya gossypii FDAG1]
Length = 378
Score = 168 bits (426), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 81/145 (55%), Positives = 104/145 (71%), Gaps = 3/145 (2%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVLE 120
AP EAEAQCA + K GKV+A A+EDMD L + + LLRH+TFSEARK P+ E E VL+
Sbjct: 153 APGEAEAQCAELAKKGKVFAAASEDMDTLCYRTPYLLRHLTFSEARKEPIHEIDTELVLQ 212
Query: 121 GMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDT---KKYTVP 177
G+ LS E+ +DL I+LGCDYC+SI+G+GP A++LIKEH S+E I+E I + K+ VP
Sbjct: 213 GLGLSQEQLVDLGIMLGCDYCESIKGVGPVTALKLIKEHGSLENIVEFISSGGNAKWKVP 272
Query: 178 EGWLYKEARELFRHPEVADPETIEF 202
E W YKEAR LF P+V D E +
Sbjct: 273 ENWPYKEARALFLQPDVLDAEGVSL 297
Score = 129 bits (325), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 64/108 (59%), Positives = 82/108 (75%), Gaps = 8/108 (7%)
Query: 310 APSSIRE-------SRKICIDASMSLYQFLIAVR-SEGNQLMSVDGEPTSHLMGTFYRTI 361
PS+IR R++ IDASMSLYQFLIAVR ++G QL S DGE TSHLMG FYRT+
Sbjct: 14 VPSAIRPREMKQFFGRRVAIDASMSLYQFLIAVRQADGVQLASADGETTSHLMGMFYRTL 73
Query: 362 RLVEHGLKPIYVFDGKPPTLKSGELNKRMEKREDAQKALAKAQEQGKL 409
R+V+HGLKP YVFDGKPP LK+ EL+KR E+R++ ++ LA+ EQ ++
Sbjct: 74 RMVDHGLKPCYVFDGKPPVLKAHELDKRTERRKETEQKLAELTEQAEI 121
Score = 95.9 bits (237), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 65/179 (36%), Positives = 93/179 (51%), Gaps = 28/179 (15%)
Query: 132 LCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGWLYKEARELFRH 191
L L+G Y D+ G + EL K+ + E++DT Y P L RH
Sbjct: 142 LLGLMGIPYVDA-PGEAEAQCAELAKKGKVFAAASEDMDTLCYRTPY---------LLRH 191
Query: 192 PEVADP--ETIEFIDLCILLGCDYCDSIRGIGPKRAIELLYSFIDLCILLGCDYCDSIRG 249
++ E I ID ++L +G+G + +DL I+LGCDYC+SI+G
Sbjct: 192 LTFSEARKEPIHEIDTELVL--------QGLGLSQE-----QLVDLGIMLGCDYCESIKG 238
Query: 250 IGPKRAIELIKEHRSIEKILENIDT---KKYTVPEGWLYKEARELFRHPEIADPETIEL 305
+GP A++LIKEH S+E I+E I + K+ VPE W YKEAR LF P++ D E + L
Sbjct: 239 VGPVTALKLIKEHGSLENIVEFISSGGNAKWKVPENWPYKEARALFLQPDVLDAEGVSL 297
Score = 62.8 bits (151), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 25/54 (46%), Positives = 38/54 (70%)
Query: 1 MTLKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSSTTQGRLDSFFTIR 54
++LKW +P E+ L+ ++C +K F EDRI++G +KL K QGRLDSFF ++
Sbjct: 295 VSLKWEEPKEEELIAFMCKEKGFNEDRIKSGIQKLRKGLKGGVQGRLDSFFKVK 348
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 25/52 (48%), Positives = 36/52 (69%)
Query: 409 LKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSTTTQGRLDSFFTIR 460
LKW +P E+ L+ ++C +K F EDRI++G +KL K QGRLDSFF ++
Sbjct: 297 LKWEEPKEEELIAFMCKEKGFNEDRIKSGIQKLRKGLKGGVQGRLDSFFKVK 348
>gi|146171182|ref|XP_001470841.1| flap endonuclease-1 [Tetrahymena thermophila]
gi|317376196|sp|A4VDN2.1|FEN1_TETTS RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|146145019|gb|EDK31639.1| flap endonuclease-1 [Tetrahymena thermophila SB210]
Length = 384
Score = 168 bits (426), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 81/150 (54%), Positives = 108/150 (72%), Gaps = 11/150 (7%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVLE 120
APCEAEAQCAA+ KA KV+AT TEDMDALTF + LLR++ ++K P+ E + EK+L+
Sbjct: 159 APCEAEAQCAALAKAKKVFATVTEDMDALTFATPFLLRNLN---SKKEPITEINYEKMLQ 215
Query: 121 GMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENID--------TK 172
++LSH EF+DLCIL GCDY I G+GP A +LI EH+S+EK+LE+++ +
Sbjct: 216 ELKLSHNEFVDLCILCGCDYLGRIEGVGPVNAFKLITEHKSLEKVLEHMEEVNKQSTKKQ 275
Query: 173 KYTVPEGWLYKEARELFRHPEVADPETIEF 202
KYTVP + Y AR+LF +PEV DPETI+
Sbjct: 276 KYTVPSSYDYVSARDLFINPEVTDPETIQL 305
Score = 92.4 bits (228), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 42/82 (51%), Positives = 57/82 (69%), Gaps = 8/82 (9%)
Query: 232 FIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENID--------TKKYTVPEGW 283
F+DLCIL GCDY I G+GP A +LI EH+S+EK+LE+++ +KYTVP +
Sbjct: 224 FVDLCILCGCDYLGRIEGVGPVNAFKLITEHKSLEKVLEHMEEVNKQSTKKQKYTVPSSY 283
Query: 284 LYKEARELFRHPEIADPETIEL 305
Y AR+LF +PE+ DPETI+L
Sbjct: 284 DYVSARDLFINPEVTDPETIQL 305
Score = 91.3 bits (225), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 48/119 (40%), Positives = 70/119 (58%), Gaps = 11/119 (9%)
Query: 303 IELVADVAPSSIRES-------RKICIDASMSLYQFLIAVRSEGN----QLMSVDGEPTS 351
++L+ + AP I+ S R I DASM++YQFL S + L DG T
Sbjct: 7 MDLLKEKAPGCIKTSDLKFYAGRMIACDASMAMYQFLATTSSASDFQIQNLTDKDGNKTG 66
Query: 352 HLMGTFYRTIRLVEHGLKPIYVFDGKPPTLKSGELNKRMEKREDAQKALAKAQEQGKLK 410
HL+G RT+ L+E+GLKP++VFDGKPP KSGEL +R + +++A + A E G ++
Sbjct: 67 HLVGLLNRTVMLIENGLKPVWVFDGKPPQFKSGELARRQKAKDEAAEKQKTAIETGDMQ 125
Score = 40.8 bits (94), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 33/53 (62%), Gaps = 1/53 (1%)
Query: 3 LKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARS-STTQGRLDSFFTIR 54
L+W PD + L K+L +K F+E R+ + +K+L A+ +Q RL+ FF ++
Sbjct: 305 LEWKKPDVEELKKFLVEEKGFSEQRVTSQMEKVLNAKEHKGSQTRLNDFFKVQ 357
Score = 40.8 bits (94), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 35/57 (61%), Gaps = 1/57 (1%)
Query: 405 EQGKLKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARS-TTTQGRLDSFFTIR 460
E +L+W PD + L K+L +K F+E R+ + +K+L A+ +Q RL+ FF ++
Sbjct: 301 ETIQLEWKKPDVEELKKFLVEEKGFSEQRVTSQMEKVLNAKEHKGSQTRLNDFFKVQ 357
>gi|146090657|ref|XP_001466297.1| putative flap endonuclease-1 (FEN-1) [Leishmania infantum JPCM5]
gi|398017392|ref|XP_003861883.1| flap endonuclease-1 (FEN-1), putative [Leishmania donovani]
gi|317374906|sp|A4I2L4.1|FEN1_LEIIN RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|134070659|emb|CAM69008.1| putative flap endonuclease-1 (FEN-1) [Leishmania infantum JPCM5]
gi|322500111|emb|CBZ35186.1| flap endonuclease-1 (FEN-1), putative [Leishmania donovani]
Length = 395
Score = 168 bits (426), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 78/143 (54%), Positives = 103/143 (72%)
Query: 60 KAPCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVL 119
+AP EAEAQCA +VK GK +A TEDMDALTFGS ++LRH+ S+A+K P+ E HL++VL
Sbjct: 158 QAPSEAEAQCAELVKKGKAWAVGTEDMDALTFGSTVMLRHLNISDAKKRPIAEIHLDEVL 217
Query: 120 EGMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEG 179
+ LS +F+DLCILLGCDY + GIGP++A E I+ + SIE LE++DT K+ VP
Sbjct: 218 QITGLSMGQFVDLCILLGCDYVPKVPGIGPQKAWEGIQRYGSIESFLESLDTTKHPVPAD 277
Query: 180 WLYKEARELFRHPEVADPETIEF 202
+ YKEAR F++PEV E I
Sbjct: 278 FYYKEARAFFQNPEVTPAEEINI 300
Score = 105 bits (262), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 53/115 (46%), Positives = 79/115 (68%), Gaps = 11/115 (9%)
Query: 304 ELVADVAPSSIRE-------SRKICIDASMSLYQFLIAVRS----EGNQLMSVDGEPTSH 352
+L+ D +P++IRE R+I IDASMS+YQF+IA++ +G +L + G+ TSH
Sbjct: 8 KLLYDKSPNAIREQELKNFFGRRIAIDASMSIYQFIIAMKGFQDGQGLELTNEKGDVTSH 67
Query: 353 LMGTFYRTIRLVEHGLKPIYVFDGKPPTLKSGELNKRMEKREDAQKALAKAQEQG 407
L G F RT+R+++ G+KPIYVFDGKPP LK+ EL R +K +A++ KA++ G
Sbjct: 68 LNGLFARTLRMIDEGIKPIYVFDGKPPKLKADELEMRRQKAAEAEREFEKAKDAG 122
Score = 86.3 bits (212), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 38/74 (51%), Positives = 52/74 (70%)
Query: 232 FIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGWLYKEAREL 291
F+DLCILLGCDY + GIGP++A E I+ + SIE LE++DT K+ VP + YKEAR
Sbjct: 227 FVDLCILLGCDYVPKVPGIGPQKAWEGIQRYGSIESFLESLDTTKHPVPADFYYKEARAF 286
Query: 292 FRHPEIADPETIEL 305
F++PE+ E I +
Sbjct: 287 FQNPEVTPAEEINI 300
Score = 59.3 bits (142), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 30/84 (35%), Positives = 49/84 (58%), Gaps = 1/84 (1%)
Query: 1 MTLKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSSTTQGRLDSFFTIRREEKRK 60
+ +++S+PDE GL+++L +K F DR+ G +L A + TQGRLDSFFT+ + ++
Sbjct: 298 INIQFSEPDEVGLIQFLVKEKLFNPDRVNKGIARLRAALTRKTQGRLDSFFTVTKVPQQT 357
Query: 61 APCEAEAQCAAMVKAGK-VYATAT 83
A A + GK V+ + T
Sbjct: 358 AAARAPLAGTKRPRDGKYVHVSGT 381
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 25/57 (43%), Positives = 39/57 (68%)
Query: 405 EQGKLKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSTTTQGRLDSFFTIRR 461
E+ +++S+PDE GL+++L +K F DR+ G +L A + TQGRLDSFFT+ +
Sbjct: 296 EEINIQFSEPDEVGLIQFLVKEKLFNPDRVNKGIARLRAALTRKTQGRLDSFFTVTK 352
>gi|444323335|ref|XP_004182308.1| hypothetical protein TBLA_0I01290 [Tetrapisispora blattae CBS 6284]
gi|387515355|emb|CCH62789.1| hypothetical protein TBLA_0I01290 [Tetrapisispora blattae CBS 6284]
Length = 387
Score = 168 bits (426), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 83/150 (55%), Positives = 107/150 (71%), Gaps = 8/150 (5%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVLE 120
AP EAEAQCA + KAG VYA A+EDMD L + LLRH+TFSEA+K P+ E +E VL
Sbjct: 153 APSEAEAQCAELAKAGVVYAAASEDMDTLCYRVPHLLRHLTFSEAKKEPIHELDVEVVLR 212
Query: 121 GMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTK-------- 172
G++L+ E+FIDL I+LGCDYCDSIRG+GP A++LIKE S+EKI+E+ +
Sbjct: 213 GLDLTIEQFIDLGIMLGCDYCDSIRGVGPVTALKLIKEFGSLEKIVEHFSEENEQKGGKS 272
Query: 173 KYTVPEGWLYKEARELFRHPEVADPETIEF 202
KY +PE W YKEARELF +P+V + +E
Sbjct: 273 KYKIPENWPYKEARELFTNPDVIQGKDVEL 302
Score = 127 bits (319), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 62/109 (56%), Positives = 82/109 (75%), Gaps = 8/109 (7%)
Query: 305 LVADVAPSSIRES-------RKICIDASMSLYQFLIAVRS-EGNQLMSVDGEPTSHLMGT 356
++ + PS++R S RK+ IDASMSLYQFLIAVR +G QL + +GE TSHLMG
Sbjct: 9 IITEHVPSAVRRSDIRTYFGRKVAIDASMSLYQFLIAVRQQDGGQLTNENGETTSHLMGM 68
Query: 357 FYRTIRLVEHGLKPIYVFDGKPPTLKSGELNKRMEKREDAQKALAKAQE 405
FYRT+R++++G+KP YVFDGKPP LKS EL KR E+R + +K LA+AQ+
Sbjct: 69 FYRTLRMIDNGIKPCYVFDGKPPVLKSHELTKRSERRAETEKQLAEAQD 117
Score = 96.3 bits (238), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 74/219 (33%), Positives = 109/219 (49%), Gaps = 43/219 (19%)
Query: 102 FSEARKLPVQEFHLEKVLEGMELSHEEFIDLCILLGCDYCDSIRGIGPKRA----IELIK 157
+EA+ + + H ++++ + +EE L L+G Y + P A EL K
Sbjct: 112 LAEAQDIAEKIKHERRLVKVTKEHNEEAKKLLGLMGIPYITA-----PSEAEAQCAELAK 166
Query: 158 EHRSIEKILENIDTKKYTVPEGWLYKEARELFRHPEV--ADPETIEFIDLCILLGCDYCD 215
E++DT Y VP L RH A E I +D+ ++L
Sbjct: 167 AGVVYAAASEDMDTLCYRVPH---------LLRHLTFSEAKKEPIHELDVEVVL------ 211
Query: 216 SIRGIGPKRAIEL-LYSFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDT 274
R ++L + FIDL I+LGCDYCDSIRG+GP A++LIKE S+EKI+E+
Sbjct: 212 --------RGLDLTIEQFIDLGIMLGCDYCDSIRGVGPVTALKLIKEFGSLEKIVEHFSE 263
Query: 275 K--------KYTVPEGWLYKEARELFRHPEIADPETIEL 305
+ KY +PE W YKEARELF +P++ + +EL
Sbjct: 264 ENEQKGGKSKYKIPENWPYKEARELFTNPDVIQGKDVEL 302
Score = 63.2 bits (152), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 29/64 (45%), Positives = 42/64 (65%)
Query: 3 LKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSSTTQGRLDSFFTIRREEKRKAP 62
LKW+ P E+ L+++LC +K F+EDR+++G +L KA S TQGRLD FF + K +
Sbjct: 302 LKWTPPKEEELIEFLCTEKMFSEDRVKSGIARLKKALKSGTQGRLDGFFKAVPKTKEQLA 361
Query: 63 CEAE 66
AE
Sbjct: 362 AAAE 365
Score = 62.0 bits (149), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 28/55 (50%), Positives = 40/55 (72%), Gaps = 3/55 (5%)
Query: 406 QGK---LKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSTTTQGRLDSFF 457
QGK LKW+ P E+ L+++LC +K F+EDR+++G +L KA + TQGRLD FF
Sbjct: 296 QGKDVELKWTPPKEEELIEFLCTEKMFSEDRVKSGIARLKKALKSGTQGRLDGFF 350
>gi|302504898|ref|XP_003014670.1| hypothetical protein ARB_07232 [Arthroderma benhamiae CBS 112371]
gi|291177976|gb|EFE33767.1| hypothetical protein ARB_07232 [Arthroderma benhamiae CBS 112371]
Length = 359
Score = 168 bits (426), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 75/137 (54%), Positives = 103/137 (75%), Gaps = 3/137 (2%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVLE 120
AP EAEAQCA + KAGKV+ A+EDMD L F + +LLRH+TFSE RK P+ E HL+KVLE
Sbjct: 119 APTEAEAQCAVLAKAGKVFGAASEDMDTLCFAAPVLLRHLTFSEQRKEPILEIHLDKVLE 178
Query: 121 GMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDT---KKYTVP 177
G+ + +F+DLCILLGCDY D I +GP A+++I++H ++EK++E I + KKY +P
Sbjct: 179 GLGMDMTQFVDLCILLGCDYLDPIPKVGPNTALKMIRDHGTLEKVVEAIQSDPKKKYVIP 238
Query: 178 EGWLYKEARELFRHPEV 194
+ W Y +ARELF +P+V
Sbjct: 239 DDWPYLQARELFFNPDV 255
Score = 102 bits (253), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 45/64 (70%), Positives = 54/64 (84%)
Query: 326 MSLYQFLIAVRSEGNQLMSVDGEPTSHLMGTFYRTIRLVEHGLKPIYVFDGKPPTLKSGE 385
MS+Y FLIAVRS+G QL + GE TSHLMG FYRT+R+V++G+KP+YVFDG PP LKSGE
Sbjct: 1 MSIYSFLIAVRSDGQQLTNESGETTSHLMGMFYRTLRMVDNGIKPLYVFDGAPPKLKSGE 60
Query: 386 LNKR 389
L KR
Sbjct: 61 LAKR 64
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 34/72 (47%), Positives = 53/72 (73%), Gaps = 3/72 (4%)
Query: 229 LYSFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDT---KKYTVPEGWLY 285
+ F+DLCILLGCDY D I +GP A+++I++H ++EK++E I + KKY +P+ W Y
Sbjct: 184 MTQFVDLCILLGCDYLDPIPKVGPNTALKMIRDHGTLEKVVEAIQSDPKKKYVIPDDWPY 243
Query: 286 KEARELFRHPEI 297
+ARELF +P++
Sbjct: 244 LQARELFFNPDV 255
Score = 62.4 bits (150), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 29/60 (48%), Positives = 41/60 (68%), Gaps = 1/60 (1%)
Query: 3 LKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSSTTQGRLDSFF-TIRREEKRKA 61
KWS PD +GLV++L +K F+EDR+RNGA +L K S Q RL+ FF + + E++KA
Sbjct: 265 FKWSAPDVEGLVRFLVEEKGFSEDRVRNGAARLTKNLKSAQQSRLEGFFKPVAKTEEQKA 324
Score = 61.6 bits (148), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 41/115 (35%), Positives = 60/115 (52%), Gaps = 9/115 (7%)
Query: 355 GTFYRTIRLVEHGLKPIYVFDGKPPTLKSGELNKRMEKREDAQKALAKAQEQGKLKWSDP 414
GT + + ++ K YV P L++ EL + R A A E KWS P
Sbjct: 218 GTLEKVVEAIQSDPKKKYVIPDDWPYLQARELFFNPDVRP------ADAPE-CDFKWSAP 270
Query: 415 DEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSTTTQGRLDSFF--TIRREEKRKS 467
D +GLV++L +K F+EDR+RNGA +L K + Q RL+ FF + EE++ S
Sbjct: 271 DVEGLVRFLVEEKGFSEDRVRNGAARLTKNLKSAQQSRLEGFFKPVAKTEEQKAS 325
>gi|302652986|ref|XP_003018331.1| hypothetical protein TRV_07676 [Trichophyton verrucosum HKI 0517]
gi|291181960|gb|EFE37686.1| hypothetical protein TRV_07676 [Trichophyton verrucosum HKI 0517]
Length = 376
Score = 168 bits (426), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 75/137 (54%), Positives = 103/137 (75%), Gaps = 3/137 (2%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVLE 120
AP EAEAQCA + KAGKV+ A+EDMD L F + +LLRH+TFSE RK P+ E HL+KVLE
Sbjct: 136 APTEAEAQCAVLAKAGKVFGAASEDMDTLCFAAPVLLRHLTFSEQRKEPILEIHLDKVLE 195
Query: 121 GMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDT---KKYTVP 177
G+ + +F+DLCILLGCDY D I +GP A+++I++H ++EK++E I + KKY +P
Sbjct: 196 GLGMDMTQFVDLCILLGCDYLDPIPKVGPNTALKMIRDHGTLEKVVEAIQSDPKKKYVIP 255
Query: 178 EGWLYKEARELFRHPEV 194
+ W Y +ARELF +P+V
Sbjct: 256 DDWPYLQARELFFNPDV 272
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 34/72 (47%), Positives = 53/72 (73%), Gaps = 3/72 (4%)
Query: 229 LYSFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDT---KKYTVPEGWLY 285
+ F+DLCILLGCDY D I +GP A+++I++H ++EK++E I + KKY +P+ W Y
Sbjct: 201 MTQFVDLCILLGCDYLDPIPKVGPNTALKMIRDHGTLEKVVEAIQSDPKKKYVIPDDWPY 260
Query: 286 KEARELFRHPEI 297
+ARELF +P++
Sbjct: 261 LQARELFFNPDV 272
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 33/48 (68%), Positives = 40/48 (83%)
Query: 342 LMSVDGEPTSHLMGTFYRTIRLVEHGLKPIYVFDGKPPTLKSGELNKR 389
L + GE TSHLMG FYRT+R+V++G+KP+YVFDG PP LKSGEL KR
Sbjct: 34 LTNESGETTSHLMGMFYRTLRMVDNGIKPLYVFDGAPPKLKSGELAKR 81
Score = 62.0 bits (149), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 29/60 (48%), Positives = 41/60 (68%), Gaps = 1/60 (1%)
Query: 3 LKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSSTTQGRLDSFF-TIRREEKRKA 61
KWS PD +GLV++L +K F+EDR+RNGA +L K S Q RL+ FF + + E++KA
Sbjct: 282 FKWSAPDVEGLVRFLVEEKGFSEDRVRNGAARLTKNLKSAQQSRLEGFFKPVAKTEEQKA 341
Score = 61.6 bits (148), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 41/115 (35%), Positives = 60/115 (52%), Gaps = 9/115 (7%)
Query: 355 GTFYRTIRLVEHGLKPIYVFDGKPPTLKSGELNKRMEKREDAQKALAKAQEQGKLKWSDP 414
GT + + ++ K YV P L++ EL + R A A E KWS P
Sbjct: 235 GTLEKVVEAIQSDPKKKYVIPDDWPYLQARELFFNPDVRP------ADAPE-CDFKWSAP 287
Query: 415 DEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSTTTQGRLDSFF--TIRREEKRKS 467
D +GLV++L +K F+EDR+RNGA +L K + Q RL+ FF + EE++ S
Sbjct: 288 DVEGLVRFLVEEKGFSEDRVRNGAARLTKNLKSAQQSRLEGFFKPVAKTEEQKAS 342
>gi|388854784|emb|CCF51677.1| probable DNA repair endonuclease rad2 [Ustilago hordei]
Length = 374
Score = 168 bits (425), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 76/137 (55%), Positives = 103/137 (75%), Gaps = 3/137 (2%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVLE 120
AP EAEAQCA + +AGKVYA +EDMD LTFG+ ILL+H+T SE +KLPV + L K LE
Sbjct: 156 APSEAEAQCAELARAGKVYAAGSEDMDTLTFGTPILLKHLTASEQKKLPVHQVDLPKALE 215
Query: 121 GMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENID---TKKYTVP 177
G+ + +FIDLCILLGCDY D I+GIGPK A++LI+EH+++EK++E+ K +P
Sbjct: 216 GLGMDMAQFIDLCILLGCDYLDPIKGIGPKTALKLIREHKTLEKVVEHFKEEAKKSVQIP 275
Query: 178 EGWLYKEARELFRHPEV 194
E W ++EAR++F +P V
Sbjct: 276 EHWPFQEARKIFENPHV 292
Score = 113 bits (282), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 55/93 (59%), Positives = 70/93 (75%), Gaps = 8/93 (8%)
Query: 305 LVADVAPSSIRE-------SRKICIDASMSLYQFLIAVR-SEGNQLMSVDGEPTSHLMGT 356
L++D AP +IRE RK+ IDASMSLYQFLIAVR ++G QLM+ GE TSHL+G
Sbjct: 9 LISDEAPGAIREMEIKTYFGRKVAIDASMSLYQFLIAVRQNDGQQLMTESGETTSHLLGF 68
Query: 357 FYRTIRLVEHGLKPIYVFDGKPPTLKSGELNKR 389
FYRT+R++++G+KP+YVFDG PP LK L KR
Sbjct: 69 FYRTLRMIDYGIKPMYVFDGTPPDLKKELLQKR 101
Score = 88.6 bits (218), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 41/98 (41%), Positives = 64/98 (65%), Gaps = 8/98 (8%)
Query: 211 CDYCDSIRGIGPKRAIELLYSFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILE 270
D ++ G+G A FIDLCILLGCDY D I+GIGPK A++LI+EH+++EK++E
Sbjct: 208 VDLPKALEGLGMDMA-----QFIDLCILLGCDYLDPIKGIGPKTALKLIREHKTLEKVVE 262
Query: 271 NID---TKKYTVPEGWLYKEARELFRHPEIADPETIEL 305
+ K +PE W ++EAR++F +P + + ++L
Sbjct: 263 HFKEEAKKSVQIPEHWPFQEARKIFENPHVQKGKDLDL 300
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/64 (54%), Positives = 44/64 (68%), Gaps = 3/64 (4%)
Query: 1 MTLKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSSTTQGRLDSFFTIRRE---E 57
+ LKW PD +G+VK+LC DK F+EDR+R G +KL K+ QGRLD FFT+ RE
Sbjct: 298 LDLKWETPDVEGMVKFLCQDKGFSEDRVRKGCEKLQKSLGQKQQGRLDGFFTVNREGAAP 357
Query: 58 KRKA 61
KRKA
Sbjct: 358 KRKA 361
Score = 72.0 bits (175), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 34/62 (54%), Positives = 43/62 (69%), Gaps = 3/62 (4%)
Query: 409 LKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSTTTQGRLDSFFTIRRE---EKR 465
LKW PD +G+VK+LC DK F+EDR+R G +KL K+ QGRLD FFT+ RE KR
Sbjct: 300 LKWETPDVEGMVKFLCQDKGFSEDRVRKGCEKLQKSLGQKQQGRLDGFFTVNREGAAPKR 359
Query: 466 KS 467
K+
Sbjct: 360 KA 361
>gi|317374910|sp|B4FHY0.1|FEN1_MAIZE RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|194695278|gb|ACF81723.1| unknown [Zea mays]
Length = 379
Score = 168 bits (425), Expect = 8e-39, Method: Compositional matrix adjust.
Identities = 76/135 (56%), Positives = 103/135 (76%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVLE 120
AP EAEA+CAA+ KV+A A+EDMD+LTFG+ LRH+ ++K+PV EF + KVLE
Sbjct: 156 APSEAEAECAALCINDKVFAVASEDMDSLTFGAPRFLRHLMDPSSKKIPVMEFDVAKVLE 215
Query: 121 GMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGW 180
+EL+ ++FIDLCIL GCDYCDSI+GIG + A++LI++H SIE ILEN++ +Y +PE W
Sbjct: 216 ELELTMDQFIDLCILCGCDYCDSIKGIGGQTALKLIRQHGSIESILENLNKDRYQIPEDW 275
Query: 181 LYKEARELFRHPEVA 195
Y+EAR LF+ P V
Sbjct: 276 PYQEARRLFKEPNVT 290
Score = 114 bits (286), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 60/112 (53%), Positives = 77/112 (68%), Gaps = 8/112 (7%)
Query: 304 ELVADVAPSSIRE-------SRKICIDASMSLYQFLIAVRSEGNQLMSVD-GEPTSHLMG 355
+L+AD AP +++E RKI +DASMS+YQFLI V G + ++ + GE TSHL G
Sbjct: 8 KLLADNAPKAMKEQKFESYFGRKIAVDASMSIYQFLIVVGRTGMETLTNEAGEVTSHLQG 67
Query: 356 TFYRTIRLVEHGLKPIYVFDGKPPTLKSGELNKRMEKREDAQKALAKAQEQG 407
F RTIRL+E G+KP+YVFDGKPP +K EL KR KR+DA K L +A E G
Sbjct: 68 MFNRTIRLLEAGIKPVYVFDGKPPDMKKQELAKRYSKRDDATKDLTEAVEVG 119
Score = 96.3 bits (238), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 40/67 (59%), Positives = 53/67 (79%)
Query: 232 FIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGWLYKEAREL 291
FIDLCIL GCDYCDSI+GIG + A++LI++H SIE ILEN++ +Y +PE W Y+EAR L
Sbjct: 224 FIDLCILCGCDYCDSIKGIGGQTALKLIRQHGSIESILENLNKDRYQIPEDWPYQEARRL 283
Query: 292 FRHPEIA 298
F+ P +
Sbjct: 284 FKEPNVT 290
Score = 58.9 bits (141), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 23/49 (46%), Positives = 35/49 (71%)
Query: 3 LKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSSTTQGRLDSFF 51
LKW+ PDE+GL+ +L D F EDR+ +K+ A++ ++QGRL+SFF
Sbjct: 296 LKWTAPDEEGLISFLVKDNGFNEDRVTKAIEKIKSAKNKSSQGRLESFF 344
Score = 58.9 bits (141), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 23/49 (46%), Positives = 35/49 (71%)
Query: 409 LKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSTTTQGRLDSFF 457
LKW+ PDE+GL+ +L D F EDR+ +K+ A++ ++QGRL+SFF
Sbjct: 296 LKWTAPDEEGLISFLVKDNGFNEDRVTKAIEKIKSAKNKSSQGRLESFF 344
>gi|347838761|emb|CCD53333.1| similar to flap endonuclease 1 [Botryotinia fuckeliana]
Length = 395
Score = 167 bits (424), Expect = 9e-39, Method: Compositional matrix adjust.
Identities = 84/147 (57%), Positives = 105/147 (71%), Gaps = 5/147 (3%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVLE 120
AP EAEAQCAA+ +AGKVYA A+EDMD L F S ILLRH+TFSE RK P+QE LEKVL
Sbjct: 155 APTEAEAQCAALARAGKVYAAASEDMDTLCFDSPILLRHLTFSEQRKEPIQEVSLEKVLT 214
Query: 121 GMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKK---YTVP 177
G+ + ++F+DLCILLGCDY D I IGP A++LI+EH +E ++ I K Y +P
Sbjct: 215 GLNMDRKQFVDLCILLGCDYLDPIPKIGPHTALKLIREHGDLETLVAWITADKKERYAIP 274
Query: 178 EGWLYKEARELFRHPEV--ADPETIEF 202
E W Y++ARELF P+V AD E +F
Sbjct: 275 EDWPYQDARELFFKPDVRPADHEDCDF 301
Score = 129 bits (325), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 60/112 (53%), Positives = 81/112 (72%), Gaps = 7/112 (6%)
Query: 303 IELVADVAPSSIRES-------RKICIDASMSLYQFLIAVRSEGNQLMSVDGEPTSHLMG 355
+ ++ D AP +++E RK+ IDASMS+Y FLIAVRS G L + DGE TSHLMG
Sbjct: 7 MSIIKDEAPDAVKEGEIKNQFGRKVAIDASMSIYSFLIAVRSGGEMLTNEDGETTSHLMG 66
Query: 356 TFYRTIRLVEHGLKPIYVFDGKPPTLKSGELNKRMEKREDAQKALAKAQEQG 407
FYRT+R+V++G+KP+YVFDG PP LKSGEL KR +++ A + L +A+E G
Sbjct: 67 MFYRTLRIVDNGIKPVYVFDGAPPKLKSGELAKRFQRKATATEGLEEAKETG 118
Score = 77.8 bits (190), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 35/69 (50%), Positives = 47/69 (68%), Gaps = 3/69 (4%)
Query: 232 FIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKK---YTVPEGWLYKEA 288
F+DLCILLGCDY D I IGP A++LI+EH +E ++ I K Y +PE W Y++A
Sbjct: 223 FVDLCILLGCDYLDPIPKIGPHTALKLIREHGDLETLVAWITADKKERYAIPEDWPYQDA 282
Query: 289 RELFRHPEI 297
RELF P++
Sbjct: 283 RELFFKPDV 291
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 24/49 (48%), Positives = 34/49 (69%)
Query: 3 LKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSSTTQGRLDSFF 51
KW PD +GLVK+L +K F+EDR+R+ A++L K S+ Q RL+ FF
Sbjct: 301 FKWEAPDVEGLVKFLVIEKGFSEDRVRSAAQRLTKNLKSSQQARLEGFF 349
Score = 55.5 bits (132), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 23/49 (46%), Positives = 34/49 (69%)
Query: 409 LKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSTTTQGRLDSFF 457
KW PD +GLVK+L +K F+EDR+R+ A++L K ++ Q RL+ FF
Sbjct: 301 FKWEAPDVEGLVKFLVIEKGFSEDRVRSAAQRLTKNLKSSQQARLEGFF 349
>gi|328874795|gb|EGG23160.1| XPG [Dictyostelium fasciculatum]
Length = 308
Score = 167 bits (424), Expect = 9e-39, Method: Compositional matrix adjust.
Identities = 75/133 (56%), Positives = 105/133 (78%)
Query: 60 KAPCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVL 119
+APCEAEAQCA +VK GK +A+ +EDMD+L FG+ ILLR++T S+ +K P+ EF EK+L
Sbjct: 170 RAPCEAEAQCAELVKGGKAWASGSEDMDSLAFGTKILLRNLTASDQKKNPLWEFDHEKLL 229
Query: 120 EGMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEG 179
G +H++FIDLCILLGCDYC+SIRGIGP RA EL+++H+SIE++++++D KY VP
Sbjct: 230 YGTGFTHDQFIDLCILLGCDYCESIRGIGPVRAFELMQKHKSIEEVVKHLDPTKYPVPVP 289
Query: 180 WLYKEARELFRHP 192
+ + EARE + P
Sbjct: 290 FPFDEAREPIQEP 302
Score = 112 bits (281), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 56/111 (50%), Positives = 79/111 (71%), Gaps = 8/111 (7%)
Query: 305 LVADVAPSSIR-------ESRKICIDASMSLYQFLIAVRSE-GNQLMSVDGEPTSHLMGT 356
L+ + AP +I+ E R I +D S +LYQFL A+ +E G+ LM+ GE TSHL GT
Sbjct: 24 LIEEQAPKAIKNTEFKALEGRIIAVDTSNNLYQFLTAIGTENGSSLMNSIGETTSHLQGT 83
Query: 357 FYRTIRLVEHGLKPIYVFDGKPPTLKSGELNKRMEKREDAQKALAKAQEQG 407
FYRTI+ + +G+KP++VFDG PPTLKSGEL KR K+++A++ L +A+E G
Sbjct: 84 FYRTIKFMSNGIKPVFVFDGAPPTLKSGELAKRSAKKKEAKENLDEAKETG 134
Score = 88.6 bits (218), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 38/64 (59%), Positives = 52/64 (81%)
Query: 232 FIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGWLYKEAREL 291
FIDLCILLGCDYC+SIRGIGP RA EL+++H+SIE++++++D KY VP + + EARE
Sbjct: 239 FIDLCILLGCDYCESIRGIGPVRAFELMQKHKSIEEVVKHLDPTKYPVPVPFPFDEAREP 298
Query: 292 FRHP 295
+ P
Sbjct: 299 IQEP 302
>gi|413946273|gb|AFW78922.1| flap endonuclease 1a [Zea mays]
Length = 523
Score = 167 bits (424), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 76/135 (56%), Positives = 104/135 (77%)
Query: 60 KAPCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVL 119
+AP EAEA+CAA+ KV+A A+EDMD+LTFG+ LRH+ ++K+PV EF + KVL
Sbjct: 299 EAPSEAEAECAALCINDKVFAVASEDMDSLTFGAPRFLRHLMDPSSKKIPVMEFDVAKVL 358
Query: 120 EGMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEG 179
E +EL+ ++FIDLCIL GCDYCDSI+GIG + A++LI++H SIE ILEN++ +Y +PE
Sbjct: 359 EELELTMDQFIDLCILCGCDYCDSIKGIGGQTALKLIRQHGSIESILENLNKDRYQIPED 418
Query: 180 WLYKEARELFRHPEV 194
W Y+EAR LF+ P V
Sbjct: 419 WPYQEARRLFKEPNV 433
Score = 114 bits (284), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 60/112 (53%), Positives = 77/112 (68%), Gaps = 8/112 (7%)
Query: 304 ELVADVAPSSIRE-------SRKICIDASMSLYQFLIAVRSEGNQLMSVD-GEPTSHLMG 355
+L+AD AP +++E RKI +DASMS+YQFLI V G + ++ + GE TSHL G
Sbjct: 152 KLLADNAPKAMKEQKFESYFGRKIAVDASMSIYQFLIVVGRTGMETLTNEAGEVTSHLQG 211
Query: 356 TFYRTIRLVEHGLKPIYVFDGKPPTLKSGELNKRMEKREDAQKALAKAQEQG 407
F RTIRL+E G+KP+YVFDGKPP +K EL KR KR+DA K L +A E G
Sbjct: 212 MFNRTIRLLEAGIKPVYVFDGKPPDMKKQELAKRYSKRDDATKDLTEAVEVG 263
Score = 96.3 bits (238), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 40/66 (60%), Positives = 53/66 (80%)
Query: 232 FIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGWLYKEAREL 291
FIDLCIL GCDYCDSI+GIG + A++LI++H SIE ILEN++ +Y +PE W Y+EAR L
Sbjct: 368 FIDLCILCGCDYCDSIKGIGGQTALKLIRQHGSIESILENLNKDRYQIPEDWPYQEARRL 427
Query: 292 FRHPEI 297
F+ P +
Sbjct: 428 FKEPNV 433
Score = 58.5 bits (140), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 23/49 (46%), Positives = 35/49 (71%)
Query: 3 LKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSSTTQGRLDSFF 51
LKW+ PDE+GL+ +L D F EDR+ +K+ A++ ++QGRL+SFF
Sbjct: 440 LKWTAPDEEGLISFLVKDNGFNEDRVTKAIEKIKSAKNKSSQGRLESFF 488
Score = 58.5 bits (140), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 23/50 (46%), Positives = 36/50 (72%)
Query: 408 KLKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSTTTQGRLDSFF 457
+LKW+ PDE+GL+ +L D F EDR+ +K+ A++ ++QGRL+SFF
Sbjct: 439 ELKWTAPDEEGLISFLVKDNGFNEDRVTKAIEKIKSAKNKSSQGRLESFF 488
>gi|195629924|gb|ACG36603.1| flap endonuclease 1a [Zea mays]
Length = 379
Score = 167 bits (423), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 76/135 (56%), Positives = 103/135 (76%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVLE 120
AP EAEA+CAA+ KV+A A+EDMD+LTFG+ LRH+ ++K+PV EF + KVLE
Sbjct: 156 APSEAEAECAALCINDKVFAVASEDMDSLTFGAPRXLRHLMDPSSKKIPVMEFDVAKVLE 215
Query: 121 GMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGW 180
+EL+ ++FIDLCIL GCDYCDSI+GIG + A++LI++H SIE ILEN++ +Y +PE W
Sbjct: 216 ELELTMDQFIDLCILCGCDYCDSIKGIGGQTALKLIRQHGSIESILENLNKDRYQIPEDW 275
Query: 181 LYKEARELFRHPEVA 195
Y+EAR LF+ P V
Sbjct: 276 PYQEARRLFKEPNVT 290
Score = 114 bits (286), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 60/112 (53%), Positives = 77/112 (68%), Gaps = 8/112 (7%)
Query: 304 ELVADVAPSSIRE-------SRKICIDASMSLYQFLIAVRSEGNQLMSVD-GEPTSHLMG 355
+L+AD AP +++E RKI +DASMS+YQFLI V G + ++ + GE TSHL G
Sbjct: 8 KLLADNAPKAMKEQKFESYFGRKIAVDASMSIYQFLIVVGRTGMETLTNEAGEVTSHLQG 67
Query: 356 TFYRTIRLVEHGLKPIYVFDGKPPTLKSGELNKRMEKREDAQKALAKAQEQG 407
F RTIRL+E G+KP+YVFDGKPP +K EL KR KR+DA K L +A E G
Sbjct: 68 MFNRTIRLLEAGIKPVYVFDGKPPDMKKQELAKRYSKRDDATKDLTEAVEVG 119
Score = 96.3 bits (238), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 40/67 (59%), Positives = 53/67 (79%)
Query: 232 FIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGWLYKEAREL 291
FIDLCIL GCDYCDSI+GIG + A++LI++H SIE ILEN++ +Y +PE W Y+EAR L
Sbjct: 224 FIDLCILCGCDYCDSIKGIGGQTALKLIRQHGSIESILENLNKDRYQIPEDWPYQEARRL 283
Query: 292 FRHPEIA 298
F+ P +
Sbjct: 284 FKEPNVT 290
Score = 59.3 bits (142), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 28/73 (38%), Positives = 43/73 (58%), Gaps = 4/73 (5%)
Query: 3 LKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSSTTQGRLDSFF----TIRREEK 58
LKW+ PDE+GL+ +L D F EDR+ +K+ A++ ++QGRL+SFF T K
Sbjct: 296 LKWTAPDEEGLISFLVKDNGFNEDRVTKAIEKIKSAKNKSSQGRLESFFKPTATTSAPLK 355
Query: 59 RKAPCEAEAQCAA 71
RK + ++ A
Sbjct: 356 RKETSDKTSKATA 368
Score = 58.9 bits (141), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 23/49 (46%), Positives = 35/49 (71%)
Query: 409 LKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSTTTQGRLDSFF 457
LKW+ PDE+GL+ +L D F EDR+ +K+ A++ ++QGRL+SFF
Sbjct: 296 LKWTAPDEEGLISFLVKDNGFNEDRVTKAIEKIKSAKNKSSQGRLESFF 344
>gi|402218593|gb|EJT98669.1| PIN domain-like protein [Dacryopinax sp. DJM-731 SS1]
Length = 399
Score = 167 bits (423), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 81/163 (49%), Positives = 111/163 (68%), Gaps = 19/163 (11%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVLE 120
AP EAEAQCA + + GKV+A +EDMD LTF + ILLRH+TFSEA+K+P+ E LE LE
Sbjct: 156 APSEAEAQCAELARGGKVFAAGSEDMDTLTFNTPILLRHLTFSEAKKMPISEISLELALE 215
Query: 121 GMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYT----- 175
G+E++ +FIDLCILLGCDY + I+GIGPK A++L++EH ++E+ILE + K
Sbjct: 216 GLEMNMSKFIDLCILLGCDYLEPIKGIGPKSALKLVREHDNMEEILETLRGKMVKKESKG 275
Query: 176 ------------VPEGWLYKEARELFRHPEV--ADPETIEFID 204
VP+ W +++A+ELF HP V AD T+E+ D
Sbjct: 276 DGTPPKKRGGVQVPDDWPWEKAKELFIHPAVTPADELTLEWKD 318
Score = 112 bits (281), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 55/94 (58%), Positives = 71/94 (75%), Gaps = 8/94 (8%)
Query: 304 ELVADVAPSSIRE-------SRKICIDASMSLYQFLIAVR-SEGNQLMSVDGEPTSHLMG 355
+L+++ AP ++R+ RK+ +DASMS+YQFLIAVR +G LM+ GE TSHLMG
Sbjct: 8 QLLSEHAPKALRDVEMKTLFGRKVAVDASMSIYQFLIAVRQKDGEMLMNDQGETTSHLMG 67
Query: 356 TFYRTIRLVEHGLKPIYVFDGKPPTLKSGELNKR 389
FYRTIR+VE+G+KP YVFDG+PP LKSG L KR
Sbjct: 68 FFYRTIRMVENGIKPAYVFDGRPPELKSGVLAKR 101
Score = 79.3 bits (194), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 40/95 (42%), Positives = 58/95 (61%), Gaps = 19/95 (20%)
Query: 229 LYSFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYT---------- 278
+ FIDLCILLGCDY + I+GIGPK A++L++EH ++E+ILE + K
Sbjct: 221 MSKFIDLCILLGCDYLEPIKGIGPKSALKLVREHDNMEEILETLRGKMVKKESKGDGTPP 280
Query: 279 -------VPEGWLYKEARELFRHPEI--ADPETIE 304
VP+ W +++A+ELF HP + AD T+E
Sbjct: 281 KKRGGVQVPDDWPWEKAKELFIHPAVTPADELTLE 315
Score = 66.6 bits (161), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 29/51 (56%), Positives = 37/51 (72%)
Query: 1 MTLKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSSTTQGRLDSFF 51
+TL+W DPD DGL+++L K F EDR+R GA+KL K +S QGRLD FF
Sbjct: 312 LTLEWKDPDVDGLIEFLVRQKGFNEDRVRKGAEKLSKMLNSKQQGRLDGFF 362
Score = 62.8 bits (151), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 27/49 (55%), Positives = 35/49 (71%)
Query: 409 LKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSTTTQGRLDSFF 457
L+W DPD DGL+++L K F EDR+R GA+KL K ++ QGRLD FF
Sbjct: 314 LEWKDPDVDGLIEFLVRQKGFNEDRVRKGAEKLSKMLNSKQQGRLDGFF 362
>gi|327306185|ref|XP_003237784.1| flap endonuclease [Trichophyton rubrum CBS 118892]
gi|326460782|gb|EGD86235.1| flap endonuclease [Trichophyton rubrum CBS 118892]
Length = 447
Score = 167 bits (423), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 74/137 (54%), Positives = 104/137 (75%), Gaps = 3/137 (2%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVLE 120
AP EAEAQCA + +AGKV+ A+EDMD L F + +LLRH+TFSE RK P+ E HL+KVLE
Sbjct: 207 APTEAEAQCAVLARAGKVFGAASEDMDTLCFAAPVLLRHLTFSEQRKEPILEIHLDKVLE 266
Query: 121 GMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDT---KKYTVP 177
G+ + +F+DLCILLGCDY D I +GP A+++I++H ++EK++E I++ KKY +P
Sbjct: 267 GLGMDMTQFVDLCILLGCDYLDPIPKVGPNTALKMIRDHGTLEKVVEAIESDPKKKYVIP 326
Query: 178 EGWLYKEARELFRHPEV 194
+ W Y +ARELF +P+V
Sbjct: 327 DDWPYLQARELFFNPDV 343
Score = 103 bits (257), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 46/66 (69%), Positives = 55/66 (83%)
Query: 324 ASMSLYQFLIAVRSEGNQLMSVDGEPTSHLMGTFYRTIRLVEHGLKPIYVFDGKPPTLKS 383
SMS+Y FLIAVRS+G QL + GE TSHLMG FYRT+R+V++G+KP+YVFDG PP LKS
Sbjct: 87 GSMSIYSFLIAVRSDGQQLTNESGETTSHLMGMFYRTLRMVDNGIKPLYVFDGAPPKLKS 146
Query: 384 GELNKR 389
GEL KR
Sbjct: 147 GELAKR 152
Score = 84.0 bits (206), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 34/72 (47%), Positives = 54/72 (75%), Gaps = 3/72 (4%)
Query: 229 LYSFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDT---KKYTVPEGWLY 285
+ F+DLCILLGCDY D I +GP A+++I++H ++EK++E I++ KKY +P+ W Y
Sbjct: 272 MTQFVDLCILLGCDYLDPIPKVGPNTALKMIRDHGTLEKVVEAIESDPKKKYVIPDDWPY 331
Query: 286 KEARELFRHPEI 297
+ARELF +P++
Sbjct: 332 LQARELFFNPDV 343
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 42/115 (36%), Positives = 60/115 (52%), Gaps = 9/115 (7%)
Query: 355 GTFYRTIRLVEHGLKPIYVFDGKPPTLKSGELNKRMEKREDAQKALAKAQEQGKLKWSDP 414
GT + + +E K YV P L++ EL + R A A E KWS P
Sbjct: 306 GTLEKVVEAIESDPKKKYVIPDDWPYLQARELFFNPDVRP------ADAPE-CDFKWSAP 358
Query: 415 DEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSTTTQGRLDSFF--TIRREEKRKS 467
D +GLV++L +K F+EDR+RNGA +L K + Q RL+ FF + EE++ S
Sbjct: 359 DVEGLVRFLVEEKGFSEDRVRNGAARLTKNLKSAQQSRLEGFFKPVAKTEEQKAS 413
Score = 62.0 bits (149), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 29/60 (48%), Positives = 41/60 (68%), Gaps = 1/60 (1%)
Query: 3 LKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSSTTQGRLDSFF-TIRREEKRKA 61
KWS PD +GLV++L +K F+EDR+RNGA +L K S Q RL+ FF + + E++KA
Sbjct: 353 FKWSAPDVEGLVRFLVEEKGFSEDRVRNGAARLTKNLKSAQQSRLEGFFKPVAKTEEQKA 412
>gi|344233741|gb|EGV65611.1| PIN domain-like protein [Candida tenuis ATCC 10573]
Length = 376
Score = 167 bits (422), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 75/139 (53%), Positives = 102/139 (73%), Gaps = 4/139 (2%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVLE 120
APCEAEAQCA + + GKV+A A+EDMD + + LLRH+TFSEARK+P+ + + +E
Sbjct: 156 APCEAEAQCAELARGGKVFAAASEDMDTICYSPPYLLRHLTFSEARKIPIDQIDCKTAIE 215
Query: 121 GMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKIL----ENIDTKKYTV 176
G E+ + FIDLCILLGCDYC++I+G+GP A +LIKEH SI+ I+ +N D KY +
Sbjct: 216 GFEMDKKTFIDLCILLGCDYCETIKGVGPVTAFKLIKEHGSIDNIVKFINDNPDKTKYKL 275
Query: 177 PEGWLYKEARELFRHPEVA 195
PE W Y+EARELF +P++
Sbjct: 276 PENWPYEEARELFLNPDIT 294
Score = 120 bits (301), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 61/111 (54%), Positives = 79/111 (71%), Gaps = 8/111 (7%)
Query: 305 LVADVAPSSIRE-------SRKICIDASMSLYQFLIAVR-SEGNQLMSVDGEPTSHLMGT 356
L+ D +P +I+E RKI IDASM LYQ+LIAVR +G L + GE TSHL G
Sbjct: 9 LIKDHSPGAIKEFQLKNLFGRKIAIDASMCLYQYLIAVRQGDGQNLTNDKGEITSHLSGM 68
Query: 357 FYRTIRLVEHGLKPIYVFDGKPPTLKSGELNKRMEKREDAQKALAKAQEQG 407
FYRT+R+VE+G+KP+YVFDGKPP LK GEL KR ++E+A K + A+E+G
Sbjct: 69 FYRTLRMVENGIKPVYVFDGKPPVLKGGELEKRYLRKEEAIKKMEDAKEEG 119
Score = 93.6 bits (231), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 42/72 (58%), Positives = 55/72 (76%), Gaps = 4/72 (5%)
Query: 231 SFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKIL----ENIDTKKYTVPEGWLYK 286
+FIDLCILLGCDYC++I+G+GP A +LIKEH SI+ I+ +N D KY +PE W Y+
Sbjct: 223 TFIDLCILLGCDYCETIKGVGPVTAFKLIKEHGSIDNIVKFINDNPDKTKYKLPENWPYE 282
Query: 287 EARELFRHPEIA 298
EARELF +P+I
Sbjct: 283 EARELFLNPDIT 294
Score = 62.4 bits (150), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 44/64 (68%), Gaps = 2/64 (3%)
Query: 409 LKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSTTTQGRLDSFFTI--RREEKRK 466
KW +PD +G+++++ DK F+EDR+++G +KL K T QGRLD FF + ++E+ +K
Sbjct: 301 FKWKEPDLEGMIEFMVNDKGFSEDRVKSGYEKLKKGLKTGVQGRLDGFFKVVPKKEDDKK 360
Query: 467 SRCQ 470
+ +
Sbjct: 361 RKAK 364
Score = 61.6 bits (148), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 26/65 (40%), Positives = 44/65 (67%), Gaps = 4/65 (6%)
Query: 1 MTLKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSSTTQGRLDSFFTI----RRE 56
++ KW +PD +G+++++ DK F+EDR+++G +KL K + QGRLD FF + +
Sbjct: 299 LSFKWKEPDLEGMIEFMVNDKGFSEDRVKSGYEKLKKGLKTGVQGRLDGFFKVVPKKEDD 358
Query: 57 EKRKA 61
+KRKA
Sbjct: 359 KKRKA 363
>gi|71023659|ref|XP_762059.1| hypothetical protein UM05912.1 [Ustilago maydis 521]
gi|74699231|sp|Q4P1V1.1|FEN1_USTMA RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|46101624|gb|EAK86857.1| hypothetical protein UM05912.1 [Ustilago maydis 521]
Length = 374
Score = 167 bits (422), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 75/137 (54%), Positives = 106/137 (77%), Gaps = 3/137 (2%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVLE 120
AP EAEAQCA + +AGKVYA +EDMD LTFG+ ILL+H+T SE +KLPV + L K LE
Sbjct: 156 APSEAEAQCAELARAGKVYAAGSEDMDTLTFGTPILLKHLTASEQKKLPVHQVDLAKALE 215
Query: 121 GMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENI--DTKKYT-VP 177
G++++ +FIDLCILLGCDY D I+GIGPK A++LI+EH+++E ++ ++ D KK +P
Sbjct: 216 GLQMTMAQFIDLCILLGCDYLDPIKGIGPKTALKLIREHKTLENVVHHLKEDGKKSVQIP 275
Query: 178 EGWLYKEARELFRHPEV 194
+ W ++EAR++F P+V
Sbjct: 276 DHWPFQEARKIFESPDV 292
Score = 111 bits (278), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 54/93 (58%), Positives = 70/93 (75%), Gaps = 8/93 (8%)
Query: 305 LVADVAPSSIRE-------SRKICIDASMSLYQFLIAVR-SEGNQLMSVDGEPTSHLMGT 356
L++D AP +I+E RK+ IDASMSLYQFLIAVR ++G QLM+ GE TSHL+G
Sbjct: 9 LISDEAPGAIKEMEIKTYFGRKVAIDASMSLYQFLIAVRQNDGQQLMTESGETTSHLLGF 68
Query: 357 FYRTIRLVEHGLKPIYVFDGKPPTLKSGELNKR 389
FYRT+R++++G+KP+YVFDG PP LK L KR
Sbjct: 69 FYRTLRMIDYGIKPMYVFDGTPPDLKKELLQKR 101
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 35/72 (48%), Positives = 55/72 (76%), Gaps = 3/72 (4%)
Query: 229 LYSFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENI--DTKKYT-VPEGWLY 285
+ FIDLCILLGCDY D I+GIGPK A++LI+EH+++E ++ ++ D KK +P+ W +
Sbjct: 221 MAQFIDLCILLGCDYLDPIKGIGPKTALKLIREHKTLENVVHHLKEDGKKSVQIPDHWPF 280
Query: 286 KEARELFRHPEI 297
+EAR++F P++
Sbjct: 281 QEARKIFESPDV 292
Score = 68.6 bits (166), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 33/64 (51%), Positives = 43/64 (67%), Gaps = 3/64 (4%)
Query: 1 MTLKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSSTTQGRLDSFFTIR---REE 57
+ LKW PD + +VK+LC DK F+EDR+R G +KL K+ S QGRLD FFT++
Sbjct: 298 LDLKWEAPDVEAMVKFLCQDKGFSEDRVRKGCEKLQKSLSQKQQGRLDGFFTVKPGSAPP 357
Query: 58 KRKA 61
KRKA
Sbjct: 358 KRKA 361
Score = 67.4 bits (163), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 29/52 (55%), Positives = 38/52 (73%)
Query: 409 LKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSTTTQGRLDSFFTIR 460
LKW PD + +VK+LC DK F+EDR+R G +KL K+ S QGRLD FFT++
Sbjct: 300 LKWEAPDVEAMVKFLCQDKGFSEDRVRKGCEKLQKSLSQKQQGRLDGFFTVK 351
>gi|343172070|gb|AEL98739.1| endonuclease, partial [Silene latifolia]
gi|343172072|gb|AEL98740.1| endonuclease, partial [Silene latifolia]
Length = 325
Score = 166 bits (421), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 76/135 (56%), Positives = 104/135 (77%)
Query: 60 KAPCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVL 119
+AP EAEAQCAA+ K GKVYA A+EDMD+LTFG+ LRH+ ++K+PV EF + KVL
Sbjct: 155 EAPSEAEAQCAALCKNGKVYAVASEDMDSLTFGACKFLRHLMDPSSKKIPVMEFDMAKVL 214
Query: 120 EGMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEG 179
E + L+ ++FIDLCIL GCDYCD+I+GIG A++LI++H SIE ILEN++ ++Y + +
Sbjct: 215 EELNLTMDQFIDLCILSGCDYCDNIKGIGGMTALKLIRQHGSIETILENLNKERYQIADD 274
Query: 180 WLYKEARELFRHPEV 194
W Y+EAR LF+ P V
Sbjct: 275 WPYQEARRLFKEPHV 289
Score = 115 bits (287), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 63/127 (49%), Positives = 84/127 (66%), Gaps = 15/127 (11%)
Query: 304 ELVADVAPSSIRE-------SRKICIDASMSLYQFLIAVRSEGNQLMSVD-GEPTSHLMG 355
+L+AD AP ++E RKI +DASMS+YQFLI V G ++++ + GE TSHL G
Sbjct: 8 KLLADNAPKCMKEQKFESYFGRKIAVDASMSIYQFLIVVGRTGTEMLTNEAGEVTSHLQG 67
Query: 356 TFYRTIRLVEHGLKPIYVFDGKPPTLKSGELNKRMEKREDAQKALAKAQEQGKLKWSDPD 415
F RTIRL+E G+KP+YVFDGKPP LK EL KR KR DA + L+ A E+G D
Sbjct: 68 MFSRTIRLLEAGIKPVYVFDGKPPDLKKQELAKRYSKRADATEDLSAAIEEG-------D 120
Query: 416 EDGLVKY 422
++G+ K+
Sbjct: 121 KEGIEKF 127
Score = 89.7 bits (221), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 37/66 (56%), Positives = 52/66 (78%)
Query: 232 FIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGWLYKEAREL 291
FIDLCIL GCDYCD+I+GIG A++LI++H SIE ILEN++ ++Y + + W Y+EAR L
Sbjct: 224 FIDLCILSGCDYCDNIKGIGGMTALKLIRQHGSIETILENLNKERYQIADDWPYQEARRL 283
Query: 292 FRHPEI 297
F+ P +
Sbjct: 284 FKEPHV 289
>gi|72386509|ref|XP_843679.1| flap endonuclease-1 (FEN-1) [Trypanosoma brucei brucei strain 927/4
GUTat10.1]
gi|74830896|sp|Q57WW6.1|FEN1_TRYB2 RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|317376199|sp|C9ZKW4.1|FEN1_TRYB9 RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|62175773|gb|AAX69901.1| flap endonuclease-1 (FEN-1), putative [Trypanosoma brucei]
gi|70800211|gb|AAZ10120.1| flap endonuclease-1 (FEN-1), putative [Trypanosoma brucei brucei
strain 927/4 GUTat10.1]
gi|261326734|emb|CBH09707.1| flap endonuclease-1 (FEN-1), putative [Trypanosoma brucei gambiense
DAL972]
Length = 393
Score = 166 bits (421), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 76/143 (53%), Positives = 102/143 (71%)
Query: 60 KAPCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVL 119
+AP EAEAQCA +VK K +A TEDMDAL FGS ++LRH+T+ EA+K P+ E+HL+++L
Sbjct: 158 QAPSEAEAQCAELVKKNKAWAVGTEDMDALAFGSRVMLRHLTYGEAKKRPIAEYHLDEIL 217
Query: 120 EGMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEG 179
E S ++FIDLCILLGCDY I GIGP +A E IK++ S+E +E++D +Y VPE
Sbjct: 218 EASGFSMQQFIDLCILLGCDYVPRISGIGPHKAWEGIKKYGSLEAFIESLDGTRYVVPEE 277
Query: 180 WLYKEARELFRHPEVADPETIEF 202
+ YK+AR F PEV E I+
Sbjct: 278 FNYKDARNFFLEPEVTPGEEIDI 300
Score = 109 bits (272), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 55/115 (47%), Positives = 80/115 (69%), Gaps = 11/115 (9%)
Query: 304 ELVADVAPSSIRE-------SRKICIDASMSLYQFLIAVRS--EGN--QLMSVDGEPTSH 352
+L+ D P +I+E R+I IDASM++YQF+IA++ EG +L + G+ TSH
Sbjct: 8 KLLYDRTPGAIKEQELKVYFGRRIAIDASMAVYQFVIAMKGFQEGQSVELTNEAGDVTSH 67
Query: 353 LMGTFYRTIRLVEHGLKPIYVFDGKPPTLKSGELNKRMEKREDAQKALAKAQEQG 407
L G F+RT+R+++ GL+PIYVFDGKPPTLK+ EL R ++ EDA+ KA+E+G
Sbjct: 68 LSGIFFRTLRMIDEGLRPIYVFDGKPPTLKASELESRRQRAEDAKHEFEKAKEEG 122
Score = 84.3 bits (207), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 38/74 (51%), Positives = 51/74 (68%)
Query: 232 FIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGWLYKEAREL 291
FIDLCILLGCDY I GIGP +A E IK++ S+E +E++D +Y VPE + YK+AR
Sbjct: 227 FIDLCILLGCDYVPRISGIGPHKAWEGIKKYGSLEAFIESLDGTRYVVPEEFNYKDARNF 286
Query: 292 FRHPEIADPETIEL 305
F PE+ E I++
Sbjct: 287 FLEPEVTPGEEIDI 300
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 47/71 (66%), Gaps = 3/71 (4%)
Query: 1 MTLKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSSTTQGRLDSFFTIRREEKRK 60
+ +++ +PDE+GL+K+L +K F+++R+ G ++L A + TQGRLD FFTI + +K+
Sbjct: 298 IDIQFREPDEEGLIKFLVDEKLFSKERVLKGIQRLRDALTKKTQGRLDQFFTITKPQKQ- 356
Query: 61 APCEAEAQCAA 71
+EA A
Sbjct: 357 --VNSEASTAG 365
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/61 (40%), Positives = 44/61 (72%)
Query: 405 EQGKLKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSTTTQGRLDSFFTIRREEK 464
E+ +++ +PDE+GL+K+L +K F+++R+ G ++L A + TQGRLD FFTI + +K
Sbjct: 296 EEIDIQFREPDEEGLIKFLVDEKLFSKERVLKGIQRLRDALTKKTQGRLDQFFTITKPQK 355
Query: 465 R 465
+
Sbjct: 356 Q 356
>gi|154339662|ref|XP_001565788.1| putative flap endonuclease-1 (FEN-1) [Leishmania braziliensis
MHOM/BR/75/M2904]
gi|317374905|sp|A4HFE4.1|FEN1_LEIBR RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|134063106|emb|CAM45304.1| putative flap endonuclease-1 (FEN-1) [Leishmania braziliensis
MHOM/BR/75/M2904]
Length = 395
Score = 166 bits (421), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 76/143 (53%), Positives = 103/143 (72%)
Query: 60 KAPCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVL 119
+AP EAEAQCA +VK GK +A TEDMDALTFGS ++LRH+ S+A+K P+ E HL++VL
Sbjct: 158 QAPSEAEAQCAELVKKGKAWAVGTEDMDALTFGSTVMLRHLNISDAKKRPIAEIHLDEVL 217
Query: 120 EGMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEG 179
+ LS ++F+DLCILLGCDY + GIGP+RA E I+ + +IE LE++D K+ VP
Sbjct: 218 QATGLSMDQFVDLCILLGCDYVPKVPGIGPQRAWEGIQRYGNIESFLESLDAAKHMVPPD 277
Query: 180 WLYKEARELFRHPEVADPETIEF 202
+ Y+EAR F +PEV E I+
Sbjct: 278 FCYREARAFFLNPEVTRAEEIDI 300
Score = 106 bits (264), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 53/115 (46%), Positives = 79/115 (68%), Gaps = 11/115 (9%)
Query: 304 ELVADVAPSSIRE-------SRKICIDASMSLYQFLIAVRS----EGNQLMSVDGEPTSH 352
+L+ D +P++IRE R+I IDASMS+YQF+IA++ +G +L + G+ TSH
Sbjct: 8 KLLYDKSPNAIRERELKSFFGRRIAIDASMSIYQFIIAMKGFQDGQGMELTNEQGDVTSH 67
Query: 353 LMGTFYRTIRLVEHGLKPIYVFDGKPPTLKSGELNKRMEKREDAQKALAKAQEQG 407
L G F RT+R+++ G+KPIYVFDGKPP LK+ EL R +K +A++ KA++ G
Sbjct: 68 LNGLFARTLRMIDEGIKPIYVFDGKPPKLKADELETRRQKAAEAEREFEKAKDAG 122
Score = 81.6 bits (200), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 36/74 (48%), Positives = 51/74 (68%)
Query: 232 FIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGWLYKEAREL 291
F+DLCILLGCDY + GIGP+RA E I+ + +IE LE++D K+ VP + Y+EAR
Sbjct: 227 FVDLCILLGCDYVPKVPGIGPQRAWEGIQRYGNIESFLESLDAAKHMVPPDFCYREARAF 286
Query: 292 FRHPEIADPETIEL 305
F +PE+ E I++
Sbjct: 287 FLNPEVTRAEEIDI 300
Score = 56.6 bits (135), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 24/53 (45%), Positives = 37/53 (69%)
Query: 1 MTLKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSSTTQGRLDSFFTI 53
+ +++S+PDE GL+++L +K F DR+ G +L A + TQGRLD+FFTI
Sbjct: 298 IDIRFSEPDEAGLIQFLVKEKLFNPDRVNKGIARLRAALTKKTQGRLDNFFTI 350
Score = 56.2 bits (134), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 25/55 (45%), Positives = 38/55 (69%)
Query: 405 EQGKLKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSTTTQGRLDSFFTI 459
E+ +++S+PDE GL+++L +K F DR+ G +L A + TQGRLD+FFTI
Sbjct: 296 EEIDIRFSEPDEAGLIQFLVKEKLFNPDRVNKGIARLRAALTKKTQGRLDNFFTI 350
>gi|296804544|ref|XP_002843124.1| DNA-repair protein rad2 [Arthroderma otae CBS 113480]
gi|317374914|sp|C5FZT5.1|FEN1_NANOT RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|238845726|gb|EEQ35388.1| DNA-repair protein rad2 [Arthroderma otae CBS 113480]
Length = 394
Score = 166 bits (420), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 73/137 (53%), Positives = 103/137 (75%), Gaps = 3/137 (2%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVLE 120
AP EAEAQCA + K GKV+ A+EDMD L F + +LLRH+TFSE RK P+ E HL+KVLE
Sbjct: 154 APTEAEAQCAVLAKEGKVFGAASEDMDTLCFAAPVLLRHLTFSEQRKEPILEIHLDKVLE 213
Query: 121 GMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDT---KKYTVP 177
G+ + +F+DLCILLGCDY D I +GP A+++I++H ++EK++E I++ KKY +P
Sbjct: 214 GLGMEMTQFVDLCILLGCDYLDPIPKVGPNTALKMIRDHGTLEKVVETIESDPKKKYVIP 273
Query: 178 EGWLYKEARELFRHPEV 194
+ W Y +AR+LF +P+V
Sbjct: 274 DDWPYLQARDLFFNPDV 290
Score = 87.4 bits (215), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 45/93 (48%), Positives = 61/93 (65%), Gaps = 8/93 (8%)
Query: 304 ELVADVAPSSIRES-------RKICIDASMSLYQFLIAVRSEGNQLMSVDGEPTSHLMGT 356
+++++ AP +I+ RK+ IDA + Q A E QL + GE TSHLMG
Sbjct: 8 QIISENAPDAIKAGEIKNQFGRKVAIDAYVKTAQRYRASTDE-EQLTNESGETTSHLMGM 66
Query: 357 FYRTIRLVEHGLKPIYVFDGKPPTLKSGELNKR 389
FYRT+R+V++G+KP+YVFDG PP LKSGEL KR
Sbjct: 67 FYRTLRMVDNGIKPLYVFDGAPPKLKSGELAKR 99
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 33/72 (45%), Positives = 54/72 (75%), Gaps = 3/72 (4%)
Query: 229 LYSFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDT---KKYTVPEGWLY 285
+ F+DLCILLGCDY D I +GP A+++I++H ++EK++E I++ KKY +P+ W Y
Sbjct: 219 MTQFVDLCILLGCDYLDPIPKVGPNTALKMIRDHGTLEKVVETIESDPKKKYVIPDDWPY 278
Query: 286 KEARELFRHPEI 297
+AR+LF +P++
Sbjct: 279 LQARDLFFNPDV 290
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/60 (46%), Positives = 41/60 (68%), Gaps = 1/60 (1%)
Query: 3 LKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSSTTQGRLDSFF-TIRREEKRKA 61
KW+ PD +GLV++L +K F+EDR+RNGA +L K S Q RL+ FF + + E++KA
Sbjct: 300 FKWTAPDVEGLVRFLVEEKGFSEDRVRNGAARLTKNLKSAQQSRLEGFFKPVAKTEQQKA 359
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 39/117 (33%), Positives = 62/117 (52%), Gaps = 8/117 (6%)
Query: 355 GTFYRTIRLVEHGLKPIYVFDGKPPTLKSGELNKRMEKREDAQKALAKAQEQGKLKWSDP 414
GT + + +E K YV P L++ +L + R A A E KW+ P
Sbjct: 253 GTLEKVVETIESDPKKKYVIPDDWPYLQARDLFFNPDVRP------ADAPE-CDFKWTAP 305
Query: 415 DEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSTTTQGRLDSFF-TIRREEKRKSRCQ 470
D +GLV++L +K F+EDR+RNGA +L K + Q RL+ FF + + E++K+ +
Sbjct: 306 DVEGLVRFLVEEKGFSEDRVRNGAARLTKNLKSAQQSRLEGFFKPVAKTEQQKATAK 362
>gi|358054307|dbj|GAA99233.1| hypothetical protein E5Q_05927 [Mixia osmundae IAM 14324]
Length = 389
Score = 166 bits (420), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 75/142 (52%), Positives = 100/142 (70%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVLE 120
AP EAEAQCA + + G VY T +EDMD LTF S I+LRH+TFSE RKLP+ L +VL+
Sbjct: 156 APSEAEAQCAELCRGGLVYGTGSEDMDTLTFSSPIILRHLTFSEQRKLPIDVIELSEVLK 215
Query: 121 GMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGW 180
GMEL+ +EFID+CIL GCDY D + IG K A++LIK+H ++ ++E + PE W
Sbjct: 216 GMELTMDEFIDMCILSGCDYVDPLPKIGAKTALKLIKDHGDLDAVVEALKDTPRAAPEDW 275
Query: 181 LYKEARELFRHPEVADPETIEF 202
Y+EARELF+HP+V E ++
Sbjct: 276 PYREARELFKHPDVLKAEEVDL 297
Score = 131 bits (330), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 67/117 (57%), Positives = 84/117 (71%), Gaps = 8/117 (6%)
Query: 305 LVADVAPSSIRE-------SRKICIDASMSLYQFLIAVRS-EGNQLMSVDGEPTSHLMGT 356
L++DVAP +IR+ RK+ +DASMS+YQFLIAVR +G QLM+ GE TSHLMG
Sbjct: 9 LISDVAPKAIRQLEMKNLFGRKVAVDASMSIYQFLIAVRQQDGQQLMNESGETTSHLMGF 68
Query: 357 FYRTIRLVEHGLKPIYVFDGKPPTLKSGELNKRMEKREDAQKALAKAQEQGKLKWSD 413
FYRTIR+VE+G+KP YVFDGKPP LKSG L KR KR +A + A+E G ++ D
Sbjct: 69 FYRTIRMVENGIKPAYVFDGKPPDLKSGVLKKRFAKRAEATEEGEDAKETGTVEEID 125
Score = 82.4 bits (202), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 36/83 (43%), Positives = 55/83 (66%), Gaps = 1/83 (1%)
Query: 224 RAIEL-LYSFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEG 282
+ +EL + FID+CIL GCDY D + IG K A++LIK+H ++ ++E + PE
Sbjct: 215 KGMELTMDEFIDMCILSGCDYVDPLPKIGAKTALKLIKDHGDLDAVVEALKDTPRAAPED 274
Query: 283 WLYKEARELFRHPEIADPETIEL 305
W Y+EARELF+HP++ E ++L
Sbjct: 275 WPYREARELFKHPDVLKAEEVDL 297
Score = 65.5 bits (158), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 30/54 (55%), Positives = 35/54 (64%)
Query: 405 EQGKLKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSTTTQGRLDSFFT 458
E+ LKW DPD +GLV +L DK F EDR+R GA K+ T QGRLD FFT
Sbjct: 293 EEVDLKWEDPDIEGLVDFLVRDKGFNEDRVRKGAAKIKSGLQTKQQGRLDGFFT 346
Score = 64.3 bits (155), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 35/73 (47%), Positives = 41/73 (56%), Gaps = 7/73 (9%)
Query: 3 LKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSSTTQGRLDSFFT-------IRR 55
LKW DPD +GLV +L DK F EDR+R GA K+ + QGRLD FFT
Sbjct: 297 LKWEDPDIEGLVDFLVRDKGFNEDRVRKGAAKIKSGLQTKQQGRLDGFFTKAAPSGEFIN 356
Query: 56 EEKRKAPCEAEAQ 68
KRKA EA+A
Sbjct: 357 PMKRKAEEEAKAN 369
>gi|320582300|gb|EFW96517.1| 5' to 3' exonuclease, 5' flap endonuclease [Ogataea parapolymorpha
DL-1]
Length = 374
Score = 166 bits (419), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 81/145 (55%), Positives = 102/145 (70%), Gaps = 3/145 (2%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVLE 120
APCEAEAQCA + + GKVYA A+EDMD L + LR++T +E++KL V EF VLE
Sbjct: 156 APCEAEAQCAELARKGKVYAAASEDMDTLCYQPPFFLRNVTAAESKKLKVDEFTTSAVLE 215
Query: 121 GMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTK---KYTVP 177
G + F+DLCILLGCDYC++I+GIGP A +LIKEH SIEKI+E I+ KY VP
Sbjct: 216 GFGMDINTFVDLCILLGCDYCETIKGIGPVTAFKLIKEHGSIEKIIEFIENDPKCKYKVP 275
Query: 178 EGWLYKEARELFRHPEVADPETIEF 202
E W Y EARELF +PEV + + I+
Sbjct: 276 ENWPYNEARELFLNPEVLNGDDIDL 300
Score = 126 bits (316), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 66/114 (57%), Positives = 83/114 (72%), Gaps = 8/114 (7%)
Query: 305 LVADVAPSSIRES-------RKICIDASMSLYQFLIAVRS-EGNQLMSVDGEPTSHLMGT 356
LVA+ AP +IR S RKI IDASM LYQFLIAVR +GNQL + G TSHLMG
Sbjct: 9 LVAENAPRAIRSSEMKSLFGRKIAIDASMCLYQFLIAVRQQDGNQLTNEAGGTTSHLMGF 68
Query: 357 FYRTIRLVEHGLKPIYVFDGKPPTLKSGELNKRMEKREDAQKALAKAQEQGKLK 410
FYRTIR+V +G+KP YVFDGKPP LK GEL KR+++RE+A++ + +E G ++
Sbjct: 69 FYRTIRMVGNGIKPCYVFDGKPPVLKGGELEKRLKRREEAEQKALELKETGTVE 122
Score = 102 bits (253), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 47/80 (58%), Positives = 61/80 (76%), Gaps = 3/80 (3%)
Query: 229 LYSFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTK---KYTVPEGWLY 285
+ +F+DLCILLGCDYC++I+GIGP A +LIKEH SIEKI+E I+ KY VPE W Y
Sbjct: 221 INTFVDLCILLGCDYCETIKGIGPVTAFKLIKEHGSIEKIIEFIENDPKCKYKVPENWPY 280
Query: 286 KEARELFRHPEIADPETIEL 305
EARELF +PE+ + + I+L
Sbjct: 281 NEARELFLNPEVLNGDDIDL 300
Score = 64.7 bits (156), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 28/64 (43%), Positives = 40/64 (62%)
Query: 409 LKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSTTTQGRLDSFFTIRREEKRKSR 468
LKW+DPD DGL++++ + F E RIR+G +KL K QGRLD FF + + + K R
Sbjct: 300 LKWTDPDLDGLIEFMVKENGFNEQRIRDGVEKLKKGLKGGVQGRLDGFFKVSVKAETKKR 359
Query: 469 CQYQ 472
+ Q
Sbjct: 360 TETQ 363
Score = 62.0 bits (149), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 27/63 (42%), Positives = 41/63 (65%), Gaps = 2/63 (3%)
Query: 1 MTLKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSSTTQGRLDSFF--TIRREEK 58
+ LKW+DPD DGL++++ + F E RIR+G +KL K QGRLD FF +++ E K
Sbjct: 298 IDLKWTDPDLDGLIEFMVKENGFNEQRIRDGVEKLKKGLKGGVQGRLDGFFKVSVKAETK 357
Query: 59 RKA 61
++
Sbjct: 358 KRT 360
>gi|385302733|gb|EIF46850.1| structure-specific endonuclease rad27 [Dekkera bruxellensis
AWRI1499]
Length = 305
Score = 166 bits (419), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 75/137 (54%), Positives = 109/137 (79%), Gaps = 3/137 (2%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVLE 120
APCEAE+QCA + KAG VY A+EDMD L + +LLR++T +E+RKL + ++ +++VL+
Sbjct: 82 APCEAESQCAELAKAGNVYGAASEDMDTLCYQPTVLLRNVTAAESRKLKIDQYDIKEVLK 141
Query: 121 GMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENI--DTK-KYTVP 177
G +++ EEF+D+CILLGCDYC++IRG+GP A +LI++++S+EKI++ I D K K+ VP
Sbjct: 142 GFDMTIEEFVDMCILLGCDYCETIRGVGPVTATKLIRKYKSLEKIVDAIKQDPKSKFKVP 201
Query: 178 EGWLYKEARELFRHPEV 194
+ W YKEARELF HPEV
Sbjct: 202 DNWPYKEARELFLHPEV 218
Score = 94.0 bits (232), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 43/77 (55%), Positives = 59/77 (76%), Gaps = 3/77 (3%)
Query: 232 FIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENI--DTK-KYTVPEGWLYKEA 288
F+D+CILLGCDYC++IRG+GP A +LI++++S+EKI++ I D K K+ VP+ W YKEA
Sbjct: 150 FVDMCILLGCDYCETIRGVGPVTATKLIRKYKSLEKIVDAIKQDPKSKFKVPDNWPYKEA 209
Query: 289 RELFRHPEIADPETIEL 305
RELF HPE+ I L
Sbjct: 210 RELFLHPEVKPGSEINL 226
Score = 64.3 bits (155), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 27/53 (50%), Positives = 37/53 (69%)
Query: 1 MTLKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSSTTQGRLDSFFTI 53
+ LKW +PD +GLV+++ + F+E RIR+GA KL KA TQGRLD FF +
Sbjct: 224 INLKWEEPDVEGLVQFMVKENGFSEQRIRDGAAKLKKALKGGTQGRLDGFFKV 276
Score = 62.8 bits (151), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 27/51 (52%), Positives = 36/51 (70%)
Query: 409 LKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSTTTQGRLDSFFTI 459
LKW +PD +GLV+++ + F+E RIR+GA KL KA TQGRLD FF +
Sbjct: 226 LKWEEPDVEGLVQFMVKENGFSEQRIRDGAAKLKKALKGGTQGRLDGFFKV 276
Score = 51.6 bits (122), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/33 (60%), Positives = 28/33 (84%)
Query: 363 LVEHGLKPIYVFDGKPPTLKSGELNKRMEKRED 395
+V +G+KP YVFDGKPP +K GEL KR+++R+D
Sbjct: 1 MVGYGIKPCYVFDGKPPVMKGGELEKRLKRRQD 33
>gi|449549056|gb|EMD40022.1| hypothetical protein CERSUDRAFT_132799 [Ceriporiopsis subvermispora
B]
Length = 409
Score = 165 bits (418), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 77/158 (48%), Positives = 108/158 (68%), Gaps = 16/158 (10%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVLE 120
AP EAEAQCA + + GKVYA +EDMD LTF S ILLRH+TFSEARK P+ E +L+K L+
Sbjct: 156 APSEAEAQCAELARGGKVYAAGSEDMDTLTFASPILLRHLTFSEARKTPISEINLQKALD 215
Query: 121 GMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENI----------- 169
G+E++ +FIDLCILLGCDY + I+G+GPK A++LIKEH S+ ++E++
Sbjct: 216 GLEMNMSQFIDLCILLGCDYLEPIKGVGPKSALKLIKEHGSLGNVIEHLREKVAAKEEAA 275
Query: 170 -DTKK----YTVPEGWLYKEARELFRHPEVADPETIEF 202
D KK +P+ W ++EA++ F P+V + +E
Sbjct: 276 EDGKKKKGGIQIPDEWPWEEAKKFFEKPDVMPADQVEL 313
Score = 114 bits (284), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 55/94 (58%), Positives = 71/94 (75%), Gaps = 8/94 (8%)
Query: 305 LVADVAPSSIRE-------SRKICIDASMSLYQFLIAVRSEGNQLMSVD-GEPTSHLMGT 356
L+ + +P++I E RK+ IDASMS+YQFLIAVR + +L++ D GE TSHLMG
Sbjct: 9 LIVENSPNAISEHEIKTLFGRKVAIDASMSIYQFLIAVRQKDGELLTNDAGETTSHLMGF 68
Query: 357 FYRTIRLVEHGLKPIYVFDGKPPTLKSGELNKRM 390
FYRTIR+VE+G+KP YVFDGKPP LK+G L+KR
Sbjct: 69 FYRTIRMVENGIKPAYVFDGKPPELKAGVLSKRF 102
Score = 76.6 bits (187), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 36/93 (38%), Positives = 57/93 (61%), Gaps = 16/93 (17%)
Query: 229 LYSFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENI------------DTKK 276
+ FIDLCILLGCDY + I+G+GPK A++LIKEH S+ ++E++ D KK
Sbjct: 221 MSQFIDLCILLGCDYLEPIKGVGPKSALKLIKEHGSLGNVIEHLREKVAAKEEAAEDGKK 280
Query: 277 ----YTVPEGWLYKEARELFRHPEIADPETIEL 305
+P+ W ++EA++ F P++ + +EL
Sbjct: 281 KKGGIQIPDEWPWEEAKKFFEKPDVMPADQVEL 313
Score = 62.0 bits (149), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 26/56 (46%), Positives = 41/56 (73%)
Query: 405 EQGKLKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSTTTQGRLDSFFTIR 460
+Q +L+W +PD +GLV++L +K F E+R+R GA+KL K + QGRLD FF+++
Sbjct: 309 DQVELEWKNPDVEGLVEFLVKEKGFNEERVRKGAEKLTKFLNAKQQGRLDGFFSVK 364
Score = 62.0 bits (149), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 25/52 (48%), Positives = 39/52 (75%)
Query: 3 LKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSSTTQGRLDSFFTIR 54
L+W +PD +GLV++L +K F E+R+R GA+KL K ++ QGRLD FF+++
Sbjct: 313 LEWKNPDVEGLVEFLVKEKGFNEERVRKGAEKLTKFLNAKQQGRLDGFFSVK 364
>gi|154292277|ref|XP_001546714.1| hypothetical protein BC1G_14593 [Botryotinia fuckeliana B05.10]
Length = 302
Score = 164 bits (416), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 79/136 (58%), Positives = 99/136 (72%), Gaps = 3/136 (2%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVLE 120
AP EAEAQCAA+ +AGKVYA A+EDMD L F S ILLRH+TFSE RK P+QE LEKVL
Sbjct: 167 APTEAEAQCAALARAGKVYAAASEDMDTLCFDSPILLRHLTFSEQRKEPIQEVSLEKVLT 226
Query: 121 GMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKK---YTVP 177
G+ + ++F+DLCILLGCDY D I IGP A++LI+EH +E ++ I K Y +P
Sbjct: 227 GLNMDRKQFVDLCILLGCDYLDPIPKIGPHTALKLIREHGDLETLVAWITADKKERYAIP 286
Query: 178 EGWLYKEARELFRHPE 193
E W Y++ARELF P+
Sbjct: 287 EDWPYQDARELFFKPD 302
Score = 113 bits (283), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 51/83 (61%), Positives = 65/83 (78%)
Query: 325 SMSLYQFLIAVRSEGNQLMSVDGEPTSHLMGTFYRTIRLVEHGLKPIYVFDGKPPTLKSG 384
SMS+Y FLIAVRS G L + DGE TSHLMG FYRT+R+V++G+KP+YVFDG PP LKSG
Sbjct: 48 SMSIYSFLIAVRSGGEMLTNEDGETTSHLMGMFYRTLRIVDNGIKPVYVFDGAPPKLKSG 107
Query: 385 ELNKRMEKREDAQKALAKAQEQG 407
EL KR +++ A + L +A+E G
Sbjct: 108 ELAKRFQRKATATEGLEEAKETG 130
Score = 76.6 bits (187), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 35/68 (51%), Positives = 46/68 (67%), Gaps = 3/68 (4%)
Query: 232 FIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKK---YTVPEGWLYKEA 288
F+DLCILLGCDY D I IGP A++LI+EH +E ++ I K Y +PE W Y++A
Sbjct: 235 FVDLCILLGCDYLDPIPKIGPHTALKLIREHGDLETLVAWITADKKERYAIPEDWPYQDA 294
Query: 289 RELFRHPE 296
RELF P+
Sbjct: 295 RELFFKPD 302
>gi|159475218|ref|XP_001695720.1| nuclease, Rad2 family [Chlamydomonas reinhardtii]
gi|317374883|sp|A8J2Z9.1|FEN1_CHLRE RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|158275731|gb|EDP01507.1| nuclease, Rad2 family [Chlamydomonas reinhardtii]
Length = 396
Score = 164 bits (415), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 75/135 (55%), Positives = 102/135 (75%)
Query: 60 KAPCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVL 119
+AP EAEAQCA M K+G VY ATEDMDALTFG+ ++RH+ ++ +PVQEF E L
Sbjct: 155 EAPTEAEAQCAEMAKSGLVYGLATEDMDALTFGAPRVIRHLMAPSSQNVPVQEFDREVAL 214
Query: 120 EGMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEG 179
+EL+ ++FIDLCIL+GCDYC +IRGIG RA+++IK+H SIE +L+ +D KY VPE
Sbjct: 215 RELELTDDQFIDLCILMGCDYCGTIRGIGAVRALQMIKKHGSIEGMLKELDPAKYPVPEP 274
Query: 180 WLYKEARELFRHPEV 194
+ +KE+ E F++PEV
Sbjct: 275 FPHKESHEFFKNPEV 289
Score = 115 bits (287), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 58/127 (45%), Positives = 86/127 (67%), Gaps = 15/127 (11%)
Query: 304 ELVADVAPSSIRES-------RKICIDASMSLYQFLIAVRSEGNQLMSVD-GEPTSHLMG 355
+L+ D AP I+E+ RK+ +DASM +YQF++ V +G+QL++ + GE TSHL G
Sbjct: 8 KLLGDNAPGCIKETKFENLFGRKVAVDASMHIYQFMVVVGRQGDQLLTNEAGEITSHLQG 67
Query: 356 TFYRTIRLVEHGLKPIYVFDGKPPTLKSGELNKRMEKREDAQKALAKAQEQGKLKWSDPD 415
F+RT +++E G+KP+YVFDGKPP LK +L +R E+R DA +AL KA+E G D
Sbjct: 68 MFFRTAKMLEAGIKPVYVFDGKPPQLKQDQLAQRTERRADANEALEKAKEAG-------D 120
Query: 416 EDGLVKY 422
++ + KY
Sbjct: 121 QEAIEKY 127
Score = 92.8 bits (229), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 41/80 (51%), Positives = 57/80 (71%)
Query: 232 FIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGWLYKEAREL 291
FIDLCIL+GCDYC +IRGIG RA+++IK+H SIE +L+ +D KY VPE + +KE+ E
Sbjct: 224 FIDLCILMGCDYCGTIRGIGAVRALQMIKKHGSIEGMLKELDPAKYPVPEPFPHKESHEF 283
Query: 292 FRHPEIADPETIELVADVAP 311
F++PE+ I + AP
Sbjct: 284 FKNPEVTPSAEIPPLKWTAP 303
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 24/50 (48%), Positives = 35/50 (70%)
Query: 3 LKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSSTTQGRLDSFFT 52
LKW+ PDE+GLV++L +K F E R+RN ++ ++ QGRL+SFFT
Sbjct: 298 LKWTAPDEEGLVQFLVNEKQFNEQRVRNAVGRIKANKTKANQGRLESFFT 347
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 24/50 (48%), Positives = 35/50 (70%)
Query: 409 LKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSTTTQGRLDSFFT 458
LKW+ PDE+GLV++L +K F E R+RN ++ ++ QGRL+SFFT
Sbjct: 298 LKWTAPDEEGLVQFLVNEKQFNEQRVRNAVGRIKANKTKANQGRLESFFT 347
>gi|353228411|emb|CCD74582.1| putative flap endonuclease-1 [Schistosoma mansoni]
Length = 133
Score = 163 bits (413), Expect = 2e-37, Method: Composition-based stats.
Identities = 73/125 (58%), Positives = 102/125 (81%), Gaps = 3/125 (2%)
Query: 86 MDALTFGSNILLRHMTFSEARKLPVQEFHLEKVLEGMELSHEEFIDLCILLGCDYCDSIR 145
MDAL FG+ +LLRH+TFSEARK+ +QEF+L VLEG+ L+ ++FIDLCILLGCDY D+IR
Sbjct: 1 MDALAFGTPVLLRHLTFSEARKMAIQEFNLTSVLEGLGLTMDQFIDLCILLGCDYVDTIR 60
Query: 146 GIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGWLYKEARELFRHPEVADPETIEFIDL 205
GIGPK+A++L+ +++SI+ +L+NID KY VP+ W Y++A++LF +PEV DP +IE +
Sbjct: 61 GIGPKKALDLLHKYQSIDCVLKNIDKSKYIVPDDWPYEDAKKLFLNPEVTDPSSIE---V 117
Query: 206 CILLG 210
C LG
Sbjct: 118 CHQLG 122
Score = 106 bits (265), Expect = 2e-20, Method: Composition-based stats.
Identities = 43/74 (58%), Positives = 63/74 (85%)
Query: 232 FIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGWLYKEAREL 291
FIDLCILLGCDY D+IRGIGPK+A++L+ +++SI+ +L+NID KY VP+ W Y++A++L
Sbjct: 44 FIDLCILLGCDYVDTIRGIGPKKALDLLHKYQSIDCVLKNIDKSKYIVPDDWPYEDAKKL 103
Query: 292 FRHPEIADPETIEL 305
F +PE+ DP +IE+
Sbjct: 104 FLNPEVTDPSSIEV 117
>gi|336259381|ref|XP_003344492.1| hypothetical protein SMAC_08742 [Sordaria macrospora k-hell]
gi|317376194|sp|D1ZT73.1|FEN1_SORMK RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|380087456|emb|CCC05373.1| unnamed protein product [Sordaria macrospora k-hell]
Length = 394
Score = 163 bits (413), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 76/137 (55%), Positives = 103/137 (75%), Gaps = 3/137 (2%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVLE 120
AP EAEAQCA + +AGKVYA A+EDMD L F + ILLRH+TFSE RK P+QE H +KVLE
Sbjct: 155 APTEAEAQCAVLARAGKVYAAASEDMDTLCFHTPILLRHLTFSEQRKEPIQEIHTDKVLE 214
Query: 121 GMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILE--NIDTK-KYTVP 177
G+ + ++F+DLCILLGCDY D I +GP A++LI+EH ++E+++E D K +Y +P
Sbjct: 215 GLGMDRKQFVDLCILLGCDYLDPIPKVGPSTALKLIREHGTLEEVVEWMKADPKGRYQIP 274
Query: 178 EGWLYKEARELFRHPEV 194
E W +++AR LF P+V
Sbjct: 275 EDWPFEDARALFFEPDV 291
Score = 134 bits (337), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 62/110 (56%), Positives = 85/110 (77%), Gaps = 7/110 (6%)
Query: 305 LVADVAPSSIRES-------RKICIDASMSLYQFLIAVRSEGNQLMSVDGEPTSHLMGTF 357
++ D AP++I+E RK+ IDASMS+Y FLIAVRS+G QLM+ GE TSHLMG F
Sbjct: 9 IIKDEAPAAIKEGDIKNQFGRKVAIDASMSIYSFLIAVRSDGQQLMNEAGETTSHLMGMF 68
Query: 358 YRTIRLVEHGLKPIYVFDGKPPTLKSGELNKRMEKREDAQKALAKAQEQG 407
YRT+R+V++G+KP+YVFDG PP LKSGEL KR +++++A + L +A+E G
Sbjct: 69 YRTLRMVDNGIKPLYVFDGAPPKLKSGELAKRFQRKQEATEGLEEAKETG 118
Score = 75.9 bits (185), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 33/69 (47%), Positives = 50/69 (72%), Gaps = 3/69 (4%)
Query: 232 FIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILE--NIDTK-KYTVPEGWLYKEA 288
F+DLCILLGCDY D I +GP A++LI+EH ++E+++E D K +Y +PE W +++A
Sbjct: 223 FVDLCILLGCDYLDPIPKVGPSTALKLIREHGTLEEVVEWMKADPKGRYQIPEDWPFEDA 282
Query: 289 RELFRHPEI 297
R LF P++
Sbjct: 283 RALFFEPDV 291
Score = 56.2 bits (134), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 25/61 (40%), Positives = 41/61 (67%), Gaps = 2/61 (3%)
Query: 409 LKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSTTTQGRLDSFFTI--RREEKRK 466
KW PD +GLV++L +K F+EDR+R+ + KL K T+ Q R++ FF + + EE++K
Sbjct: 301 FKWEKPDIEGLVQFLAHEKGFSEDRVRSASIKLQKNMQTSQQARIEGFFKVLPKTEEEKK 360
Query: 467 S 467
+
Sbjct: 361 A 361
Score = 55.8 bits (133), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 25/61 (40%), Positives = 41/61 (67%), Gaps = 2/61 (3%)
Query: 3 LKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSSTTQGRLDSFFTI--RREEKRK 60
KW PD +GLV++L +K F+EDR+R+ + KL K ++ Q R++ FF + + EE++K
Sbjct: 301 FKWEKPDIEGLVQFLAHEKGFSEDRVRSASIKLQKNMQTSQQARIEGFFKVLPKTEEEKK 360
Query: 61 A 61
A
Sbjct: 361 A 361
>gi|298706804|emb|CBJ29727.1| conserved unknown protein [Ectocarpus siliculosus]
Length = 476
Score = 163 bits (412), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 98/258 (37%), Positives = 136/258 (52%), Gaps = 47/258 (18%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVLE 120
AP EAEAQCAA+ + G VY TATEDMDALTF + LLR MTFS + + P+ E +K+L+
Sbjct: 159 APSEAEAQCAALAREGVVYGTATEDMDALTFQTPKLLRRMTFSGSNQ-PILEVDYQKLLQ 217
Query: 121 GMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGW 180
G+ELSHE+F+DLC+L GCDY SI+GIGPK+A+ L+++H +IE+I++++D KKY VP+ W
Sbjct: 218 GLELSHEKFVDLCVLCGCDYTGSIKGIGPKKALALVRQHGTIEEIIKHLDAKKYPVPDDW 277
Query: 181 L------------------YKEAR---ELFRHPEVADPETIEFIDLCILLGCDYCDSIRG 219
L KEAR E E A+PE + D+ G D +
Sbjct: 278 LEPAERAERRKQARQEAKARKEARAKEEAKVKAETANPEAVSEEDVQQKEGDSDSDKAKA 337
Query: 220 IGPKRAIELLYSFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTV 279
P + + D+ K R E E+ T
Sbjct: 338 DTPDHGVSVAKEAADVS----------------------AKRERETEDAAESEQEMDDTP 375
Query: 280 PEGWLYKEARELFRHPEI 297
P +Y++AR LF PE+
Sbjct: 376 P---MYRQARGLFLKPEV 390
Score = 106 bits (264), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 56/112 (50%), Positives = 76/112 (67%), Gaps = 11/112 (9%)
Query: 305 LVADVAPSSIRE-------SRKICIDASMSLYQFLIAVRSEG---NQLMSVD-GEPTSHL 353
L++D AP+ ++E RK+ +DASM++YQFLIAVRS G +Q+++ + GE TSH+
Sbjct: 9 LLSDEAPNCMKEVDLDSLTGRKVAVDASMAMYQFLIAVRSGGEGQSQMLTNEAGEVTSHI 68
Query: 354 MGTFYRTIRLVEHGLKPIYVFDGKPPTLKSGELNKRMEKREDAQKALAKAQE 405
G F RTIR++ G+KP Y+FDGKPP LK GEL KR KR A+ L A E
Sbjct: 69 QGMFNRTIRMLSKGVKPCYIFDGKPPQLKGGELAKRTAKRAKAEAELKVATE 120
Score = 94.0 bits (232), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 81/279 (29%), Positives = 127/279 (45%), Gaps = 64/279 (22%)
Query: 208 LLGCDYCDSIRGIGPKRAIELLY-SFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIE 266
+L DY ++G+ EL + F+DLC+L GCDY SI+GIGPK+A+ L+++H +IE
Sbjct: 207 ILEVDYQKLLQGL------ELSHEKFVDLCVLCGCDYTGSIKGIGPKKALALVRQHGTIE 260
Query: 267 KIL------------------ENIDTKKYTVPEGWLYKEAR---ELFRHPEIADPETI-- 303
+I+ E + +K E KEAR E E A+PE +
Sbjct: 261 EIIKHLDAKKYPVPDDWLEPAERAERRKQARQEAKARKEARAKEEAKVKAETANPEAVSE 320
Query: 304 -ELVADVAPSSIRESRKICIDASMSLYQFLIAVRSEGNQLMSVDGEPTSHLMGT--FYRT 360
++ S +++ D +S+ + V ++ + E + T YR
Sbjct: 321 EDVQQKEGDSDSDKAKADTPDHGVSVAKEAADVSAKRERETEDAAESEQEMDDTPPMYRQ 380
Query: 361 IRLVEHGLKPIYVFDGKPPTLKSGELNKRMEKREDAQKALAKAQEQGKLKWSDPDEDGLV 420
R GL ++ KP +GE KLKW+DPDE GL+
Sbjct: 381 AR----GL---FL---KPEVEPAGEY---------------------KLKWTDPDEPGLI 409
Query: 421 KYLCGDKNFAEDRIRNGAKKLLKARSTTTQGRLDSFFTI 459
K+L +K F +R+ +G KL AR +Q R+DSFF++
Sbjct: 410 KFLVEEKGFNAERVASGIVKLKGARKNVSQKRMDSFFSV 448
Score = 61.6 bits (148), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 25/51 (49%), Positives = 37/51 (72%)
Query: 3 LKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSSTTQGRLDSFFTI 53
LKW+DPDE GL+K+L +K F +R+ +G KL AR + +Q R+DSFF++
Sbjct: 398 LKWTDPDEPGLIKFLVEEKGFNAERVASGIVKLKGARKNVSQKRMDSFFSV 448
>gi|325186427|emb|CCA20932.1| flap endonuclease 1 putative [Albugo laibachii Nc14]
Length = 389
Score = 163 bits (412), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 76/150 (50%), Positives = 104/150 (69%), Gaps = 8/150 (5%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVLE 120
APCEAEA CA + K KVYA+ TEDMD LTFG+ +L R MT + +K+P+ E LE+ L+
Sbjct: 160 APCEAEATCATLAKHHKVYASGTEDMDVLTFGTPVLYRRMTVAANKKVPILEIKLEQALK 219
Query: 121 GMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENI---DTKKYTVP 177
++L+ ++F+DLCIL GCDYCDSIRGIGPK+A IKEH++IE L+++ + K +P
Sbjct: 220 ALDLTEQQFVDLCILCGCDYCDSIRGIGPKKAFNGIKEHKTIENFLQHLQQSNNKGVVIP 279
Query: 178 EGWL-----YKEARELFRHPEVADPETIEF 202
E WL YK ARE+F + EV D ++
Sbjct: 280 EEWLGDDPIYKRAREMFVNAEVVDVNEVDL 309
Score = 120 bits (301), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 64/119 (53%), Positives = 80/119 (67%), Gaps = 12/119 (10%)
Query: 303 IELVADVAPSSIRE-------SRKICIDASMSLYQFLIAVRSE-----GNQLMSVDGEPT 350
++L+ + APS IRE R I IDASM+LYQFLIA+RS L + DGE T
Sbjct: 7 MKLLQEEAPSCIREVQMSHLAGRSIAIDASMALYQFLIAIRSNDGAGPAQALTNQDGEDT 66
Query: 351 SHLMGTFYRTIRLVEHGLKPIYVFDGKPPTLKSGELNKRMEKREDAQKALAKAQEQGKL 409
SHL G F RTIRL+E+G+KP+YVFDGKPP +KS EL KR ++R A K+L +A E G L
Sbjct: 67 SHLQGMFSRTIRLMENGIKPVYVFDGKPPVMKSKELEKRKDRRTAANKSLEEATEAGNL 125
Score = 90.1 bits (222), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 42/82 (51%), Positives = 56/82 (68%), Gaps = 8/82 (9%)
Query: 232 FIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENI---DTKKYTVPEGWL---- 284
F+DLCIL GCDYCDSIRGIGPK+A IKEH++IE L+++ + K +PE WL
Sbjct: 228 FVDLCILCGCDYCDSIRGIGPKKAFNGIKEHKTIENFLQHLQQSNNKGVVIPEEWLGDDP 287
Query: 285 -YKEARELFRHPEIADPETIEL 305
YK ARE+F + E+ D ++L
Sbjct: 288 IYKRAREMFVNAEVVDVNEVDL 309
Score = 49.7 bits (117), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 31/77 (40%), Positives = 40/77 (51%), Gaps = 12/77 (15%)
Query: 3 LKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSSTTQGRLDSFF---------TI 53
LKW +P D L ++L F DR+ KL K+RSS +Q RLDSFF T
Sbjct: 309 LKWKEPLADELSRFLVDKHGFRADRVTTAIVKLKKSRSSQSQKRLDSFFKAVPGATTPTK 368
Query: 54 RRE---EKRKAPCEAEA 67
+RE KR AP ++ A
Sbjct: 369 KREADSSKRPAPKKSRA 385
Score = 47.4 bits (111), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 22/49 (44%), Positives = 29/49 (59%)
Query: 409 LKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSTTTQGRLDSFF 457
LKW +P D L ++L F DR+ KL K+RS+ +Q RLDSFF
Sbjct: 309 LKWKEPLADELSRFLVDKHGFRADRVTTAIVKLKKSRSSQSQKRLDSFF 357
>gi|440470255|gb|ELQ39332.1| DNA-repair protein rad2 [Magnaporthe oryzae Y34]
gi|440487391|gb|ELQ67182.1| DNA-repair protein rad2 [Magnaporthe oryzae P131]
Length = 416
Score = 162 bits (410), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 80/158 (50%), Positives = 107/158 (67%), Gaps = 24/158 (15%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVLE 120
AP EAEAQCA + +AGKV+A A+EDMD L F S ILLRH+TFSEARK P+QE H++KVLE
Sbjct: 155 APTEAEAQCAVLARAGKVFAAASEDMDTLCFDSPILLRHLTFSEARKEPIQEIHVDKVLE 214
Query: 121 GMELS----------------------HEEFIDLCILLGCDYCDSIRGIGPKRAIELIKE 158
G+++ +++F+DLCILLGCDY D I +GP A++LI+E
Sbjct: 215 GLDMDRKQVRCTSDMVNVYQERPADSFNKQFVDLCILLGCDYLDPIPKVGPSTALKLIRE 274
Query: 159 HRSIEKILENIDTK--KYTVPEGWLYKEARELFRHPEV 194
H S+E I+E + KYTVPE W +++AR+LF +P V
Sbjct: 275 HGSLETIVEKMKKGELKYTVPEDWPFEDARDLFFNPAV 312
Score = 124 bits (311), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 57/110 (51%), Positives = 82/110 (74%), Gaps = 7/110 (6%)
Query: 305 LVADVAPSSIRES-------RKICIDASMSLYQFLIAVRSEGNQLMSVDGEPTSHLMGTF 357
++ + AP++I+ RK+ IDASMS+Y FLIAVRS G L + DG+ TSHLMG F
Sbjct: 9 IIKENAPAAIKTGEIKNQFGRKVAIDASMSIYSFLIAVRSNGEMLTNEDGQTTSHLMGMF 68
Query: 358 YRTIRLVEHGLKPIYVFDGKPPTLKSGELNKRMEKREDAQKALAKAQEQG 407
YRT+R+V++G+KP+YVFDG PP LKSGEL +R +++++A + L +A+E G
Sbjct: 69 YRTLRMVDNGIKPLYVFDGAPPKLKSGELARRYQRKQEALEGLEEARETG 118
Score = 82.0 bits (201), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 36/68 (52%), Positives = 50/68 (73%), Gaps = 2/68 (2%)
Query: 232 FIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTK--KYTVPEGWLYKEAR 289
F+DLCILLGCDY D I +GP A++LI+EH S+E I+E + KYTVPE W +++AR
Sbjct: 245 FVDLCILLGCDYLDPIPKVGPSTALKLIREHGSLETIVEKMKKGELKYTVPEDWPFEDAR 304
Query: 290 ELFRHPEI 297
+LF +P +
Sbjct: 305 DLFFNPAV 312
Score = 60.1 bits (144), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/49 (55%), Positives = 34/49 (69%)
Query: 409 LKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSTTTQGRLDSFF 457
KW PD +GLVKYL +K F+EDR+R GA +L KA T+ Q RL+ FF
Sbjct: 322 FKWEKPDVEGLVKYLVTEKGFSEDRVRPGALRLEKALGTSQQQRLEGFF 370
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 30/62 (48%), Positives = 40/62 (64%), Gaps = 2/62 (3%)
Query: 2 TLKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSSTTQGRLDSFF--TIRREEKR 59
KW PD +GLVKYL +K F+EDR+R GA +L KA ++ Q RL+ FF R E++
Sbjct: 321 NFKWEKPDVEGLVKYLVTEKGFSEDRVRPGALRLEKALGTSQQQRLEGFFKPVARTAEEQ 380
Query: 60 KA 61
KA
Sbjct: 381 KA 382
>gi|406865692|gb|EKD18733.1| DNA-repair protein rad2 [Marssonina brunnea f. sp. 'multigermtubi'
MB_m1]
Length = 460
Score = 162 bits (410), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 74/136 (54%), Positives = 101/136 (74%), Gaps = 2/136 (1%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVLE 120
AP EAEAQCA + +A KVYA A+EDMD L F + +LLRH+TFSE RK P+QE L KVLE
Sbjct: 221 APTEAEAQCAVLARADKVYAAASEDMDTLCFDAPVLLRHLTFSEQRKEPIQEIFLPKVLE 280
Query: 121 GMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDT--KKYTVPE 178
G+ + +F+DLCILLGCDY D I +GP A+++I+E+ +IEK + ++ KY++PE
Sbjct: 281 GLGMDRAQFVDLCILLGCDYLDPIPKVGPNAALKIIREYGTIEKFVAAVEAGKAKYSIPE 340
Query: 179 GWLYKEARELFRHPEV 194
W YK+AR+LF +P+V
Sbjct: 341 DWPYKDARDLFFNPDV 356
Score = 114 bits (284), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 52/83 (62%), Positives = 65/83 (78%)
Query: 325 SMSLYQFLIAVRSEGNQLMSVDGEPTSHLMGTFYRTIRLVEHGLKPIYVFDGKPPTLKSG 384
SMS+Y FLIAVRS G L + DGE TSHLMG FYRT+R+V++G+KPIYVFDG PP LKSG
Sbjct: 102 SMSIYSFLIAVRSGGEMLTNEDGETTSHLMGMFYRTLRIVDNGIKPIYVFDGAPPKLKSG 161
Query: 385 ELNKRMEKREDAQKALAKAQEQG 407
EL KR +++ A + L +A+E G
Sbjct: 162 ELAKRFQRKATATEGLEEAKETG 184
Score = 82.0 bits (201), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 37/83 (44%), Positives = 57/83 (68%), Gaps = 7/83 (8%)
Query: 217 IRGIGPKRAIELLYSFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDT-- 274
+ G+G RA F+DLCILLGCDY D I +GP A+++I+E+ +IEK + ++
Sbjct: 279 LEGLGMDRA-----QFVDLCILLGCDYLDPIPKVGPNAALKIIREYGTIEKFVAAVEAGK 333
Query: 275 KKYTVPEGWLYKEARELFRHPEI 297
KY++PE W YK+AR+LF +P++
Sbjct: 334 AKYSIPEDWPYKDARDLFFNPDV 356
Score = 59.3 bits (142), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 25/49 (51%), Positives = 34/49 (69%)
Query: 3 LKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSSTTQGRLDSFF 51
KW PD DGL+K+L +K F+EDR+R+GA +L K S+ Q RL+ FF
Sbjct: 366 FKWEAPDVDGLIKFLVEEKGFSEDRVRSGATRLQKNLKSSQQARLEGFF 414
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 24/49 (48%), Positives = 34/49 (69%)
Query: 409 LKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSTTTQGRLDSFF 457
KW PD DGL+K+L +K F+EDR+R+GA +L K ++ Q RL+ FF
Sbjct: 366 FKWEAPDVDGLIKFLVEEKGFSEDRVRSGATRLQKNLKSSQQARLEGFF 414
>gi|317374928|sp|C4YBJ8.2|FEN1_CLAL4 RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
Length = 376
Score = 162 bits (410), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 72/145 (49%), Positives = 104/145 (71%), Gaps = 4/145 (2%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVLE 120
AP EAEAQCA + +AGKV+A A+EDMD L + LLRH+T +EARK+P+ + E +L+
Sbjct: 156 APSEAEAQCAELARAGKVFAAASEDMDTLCYEPKYLLRHLTVAEARKMPIDQIDYEAMLK 215
Query: 121 GMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKIL----ENIDTKKYTV 176
G+++ F+DLCILLGCDYC++I+G+GP A +LIKEH S++ I+ EN + KY V
Sbjct: 216 GLDMDRSTFVDLCILLGCDYCETIKGVGPVTAFKLIKEHGSLDNIVKWIQENPEKTKYKV 275
Query: 177 PEGWLYKEARELFRHPEVADPETIE 201
PE W Y EA++LF +PE+ + ++
Sbjct: 276 PENWPYDEAKQLFMNPEITKGDEVD 300
Score = 126 bits (317), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 66/114 (57%), Positives = 80/114 (70%), Gaps = 8/114 (7%)
Query: 304 ELVADVAPSSIRE-------SRKICIDASMSLYQFLIAVRS-EGNQLMSVDGEPTSHLMG 355
+L+ + AP + +E RK+ IDASM LYQ+LIAVR +G QL S DGE TSHL G
Sbjct: 8 QLIKEHAPDAFKEYQLKNLFGRKVAIDASMCLYQYLIAVRQQDGQQLTSEDGETTSHLSG 67
Query: 356 TFYRTIRLVEHGLKPIYVFDGKPPTLKSGELNKRMEKREDAQKALAKAQEQGKL 409
FYRTIRLVE GLKP+YVFDGKPP LK GEL KR+ KR+DA K + +E G +
Sbjct: 68 MFYRTIRLVESGLKPMYVFDGKPPVLKGGELEKRLLKRQDALKQIEDLKETGTV 121
Score = 97.1 bits (240), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 63/188 (33%), Positives = 97/188 (51%), Gaps = 33/188 (17%)
Query: 126 HEEFIDLCILLGCDYCDSIRGIGPKRA----IELIKEHRSIEKILENIDTKKYTVPEGWL 181
++E L L+G Y + P A EL + + E++DT Y
Sbjct: 139 NDEAKKLLELMGIPYI-----VAPSEAEAQCAELARAGKVFAAASEDMDTLCY------- 186
Query: 182 YKEARELFRHPEVADPETIEFIDLCILLGCDYCDSIRGIGPKRAIELLYSFIDLCILLGC 241
E + L RH VA+ + + DY ++G+ R+ +F+DLCILLGC
Sbjct: 187 --EPKYLLRHLTVAEARKMPIDQI------DYEAMLKGLDMDRS-----TFVDLCILLGC 233
Query: 242 DYCDSIRGIGPKRAIELIKEHRSIEKIL----ENIDTKKYTVPEGWLYKEARELFRHPEI 297
DYC++I+G+GP A +LIKEH S++ I+ EN + KY VPE W Y EA++LF +PEI
Sbjct: 234 DYCETIKGVGPVTAFKLIKEHGSLDNIVKWIQENPEKTKYKVPENWPYDEAKQLFMNPEI 293
Query: 298 ADPETIEL 305
+ +++
Sbjct: 294 TKGDEVDV 301
Score = 65.5 bits (158), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 27/51 (52%), Positives = 39/51 (76%)
Query: 3 LKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSSTTQGRLDSFFTI 53
+KW++P+ DGLV+++ K F+E+RIR+GA+KL KA QGRLD FFT+
Sbjct: 301 VKWNEPNVDGLVEFMVKQKGFSEERIRSGAEKLKKALKGGVQGRLDGFFTV 351
Score = 65.1 bits (157), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 28/60 (46%), Positives = 42/60 (70%)
Query: 409 LKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSTTTQGRLDSFFTIRREEKRKSR 468
+KW++P+ DGLV+++ K F+E+RIR+GA+KL KA QGRLD FFT+ + K +
Sbjct: 301 VKWNEPNVDGLVEFMVKQKGFSEERIRSGAEKLKKALKGGVQGRLDGFFTVVKSSPAKRK 360
>gi|403414469|emb|CCM01169.1| predicted protein [Fibroporia radiculosa]
Length = 400
Score = 162 bits (409), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 73/158 (46%), Positives = 107/158 (67%), Gaps = 16/158 (10%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVLE 120
AP EAEAQCA + + GKVYA +EDMD LTF + +L RH+TFSEARK P+ E HL+K LE
Sbjct: 148 APSEAEAQCAELARGGKVYAAGSEDMDTLTFSAPVLYRHLTFSEARKQPISEIHLDKALE 207
Query: 121 GMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTK-------- 172
G+E++ +FIDLCILLGCDY + I+GIGPK A++L++EH ++ ++E++ K
Sbjct: 208 GLEMNMSQFIDLCILLGCDYLEPIKGIGPKSALKLVREHGNLGAVIEHLQEKLAAKEEAK 267
Query: 173 --------KYTVPEGWLYKEARELFRHPEVADPETIEF 202
++PE W ++EA+++F P+V + I+
Sbjct: 268 EDGKKKKGGISIPEEWPWEEAKKVFEKPDVTPADQIDI 305
Score = 99.8 bits (247), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 50/96 (52%), Positives = 70/96 (72%), Gaps = 14/96 (14%)
Query: 305 LVADVAPSSIRE-------SRKICIDASMSLYQFLIAVRSEGNQLMSVDGEPTSHLMGTF 357
L+ + AP +I+E RK+ IDASMS+YQFLIA +++++G SHLMG F
Sbjct: 9 LLVEHAPKAIQEHDIKTLFGRKVAIDASMSIYQFLIA-----PPVLTLNG--YSHLMGFF 61
Query: 358 YRTIRLVEHGLKPIYVFDGKPPTLKSGELNKRMEKR 393
YRTIR+VE+G+KP+YVFDGKPP +K+G L+KR+ +R
Sbjct: 62 YRTIRMVENGIKPLYVFDGKPPEMKAGVLSKRLARR 97
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 32/93 (34%), Positives = 57/93 (61%), Gaps = 16/93 (17%)
Query: 229 LYSFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTK------------- 275
+ FIDLCILLGCDY + I+GIGPK A++L++EH ++ ++E++ K
Sbjct: 213 MSQFIDLCILLGCDYLEPIKGIGPKSALKLVREHGNLGAVIEHLQEKLAAKEEAKEDGKK 272
Query: 276 ---KYTVPEGWLYKEARELFRHPEIADPETIEL 305
++PE W ++EA+++F P++ + I++
Sbjct: 273 KKGGISIPEEWPWEEAKKVFEKPDVTPADQIDI 305
Score = 61.6 bits (148), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/71 (42%), Positives = 43/71 (60%), Gaps = 4/71 (5%)
Query: 394 EDAQKALAKAQ----EQGKLKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSTTT 449
E+A+K K +Q ++W PD DGLV++L +K F E+R+R GA+KL K +
Sbjct: 286 EEAKKVFEKPDVTPADQIDIEWKSPDADGLVQFLVTEKGFNEERVRKGAEKLAKFLNAKQ 345
Query: 450 QGRLDSFFTIR 460
QGRLD FF +
Sbjct: 346 QGRLDGFFAAK 356
Score = 60.8 bits (146), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/54 (46%), Positives = 37/54 (68%)
Query: 1 MTLKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSSTTQGRLDSFFTIR 54
+ ++W PD DGLV++L +K F E+R+R GA+KL K ++ QGRLD FF +
Sbjct: 303 IDIEWKSPDADGLVQFLVTEKGFNEERVRKGAEKLAKFLNAKQQGRLDGFFAAK 356
>gi|260941263|ref|XP_002614798.1| hypothetical protein CLUG_05576 [Clavispora lusitaniae ATCC 42720]
gi|238851984|gb|EEQ41448.1| hypothetical protein CLUG_05576 [Clavispora lusitaniae ATCC 42720]
Length = 340
Score = 162 bits (409), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 72/145 (49%), Positives = 104/145 (71%), Gaps = 4/145 (2%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVLE 120
AP EAEAQCA + +AGKV+A A+EDMD L + LLRH+T +EARK+P+ + E +L+
Sbjct: 120 APSEAEAQCAELARAGKVFAAASEDMDTLCYEPKYLLRHLTVAEARKMPIDQIDYEAMLK 179
Query: 121 GMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKIL----ENIDTKKYTV 176
G+++ F+DLCILLGCDYC++I+G+GP A +LIKEH S++ I+ EN + KY V
Sbjct: 180 GLDMDRSTFVDLCILLGCDYCETIKGVGPVTAFKLIKEHGSLDNIVKWIQENPEKTKYKV 239
Query: 177 PEGWLYKEARELFRHPEVADPETIE 201
PE W Y EA++LF +PE+ + ++
Sbjct: 240 PENWPYDEAKQLFMNPEITKGDEVD 264
Score = 110 bits (276), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 56/85 (65%), Positives = 64/85 (75%), Gaps = 1/85 (1%)
Query: 326 MSLYQFLIAVRS-EGNQLMSVDGEPTSHLMGTFYRTIRLVEHGLKPIYVFDGKPPTLKSG 384
M LYQ+LIAVR +G QL S DGE TSHL G FYRTIRLVE GLKP+YVFDGKPP LK G
Sbjct: 1 MCLYQYLIAVRQQDGQQLTSEDGETTSHLSGMFYRTIRLVESGLKPMYVFDGKPPVLKGG 60
Query: 385 ELNKRMEKREDAQKALAKAQEQGKL 409
EL KR+ KR+DA K + +E G +
Sbjct: 61 ELEKRLLKRQDALKQIEDLKETGTV 85
Score = 97.1 bits (240), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 63/188 (33%), Positives = 97/188 (51%), Gaps = 33/188 (17%)
Query: 126 HEEFIDLCILLGCDYCDSIRGIGPKRA----IELIKEHRSIEKILENIDTKKYTVPEGWL 181
++E L L+G Y + P A EL + + E++DT Y
Sbjct: 103 NDEAKKLLELMGIPYI-----VAPSEAEAQCAELARAGKVFAAASEDMDTLCY------- 150
Query: 182 YKEARELFRHPEVADPETIEFIDLCILLGCDYCDSIRGIGPKRAIELLYSFIDLCILLGC 241
E + L RH VA+ + + DY ++G+ R+ +F+DLCILLGC
Sbjct: 151 --EPKYLLRHLTVAEARKMPIDQI------DYEAMLKGLDMDRS-----TFVDLCILLGC 197
Query: 242 DYCDSIRGIGPKRAIELIKEHRSIEKIL----ENIDTKKYTVPEGWLYKEARELFRHPEI 297
DYC++I+G+GP A +LIKEH S++ I+ EN + KY VPE W Y EA++LF +PEI
Sbjct: 198 DYCETIKGVGPVTAFKLIKEHGSLDNIVKWIQENPEKTKYKVPENWPYDEAKQLFMNPEI 257
Query: 298 ADPETIEL 305
+ +++
Sbjct: 258 TKGDEVDV 265
Score = 65.5 bits (158), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 27/51 (52%), Positives = 39/51 (76%)
Query: 3 LKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSSTTQGRLDSFFTI 53
+KW++P+ DGLV+++ K F+E+RIR+GA+KL KA QGRLD FFT+
Sbjct: 265 VKWNEPNVDGLVEFMVKQKGFSEERIRSGAEKLKKALKGGVQGRLDGFFTV 315
Score = 65.1 bits (157), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 28/60 (46%), Positives = 42/60 (70%)
Query: 409 LKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSTTTQGRLDSFFTIRREEKRKSR 468
+KW++P+ DGLV+++ K F+E+RIR+GA+KL KA QGRLD FFT+ + K +
Sbjct: 265 VKWNEPNVDGLVEFMVKQKGFSEERIRSGAEKLKKALKGGVQGRLDGFFTVVKSSPAKRK 324
>gi|328852744|gb|EGG01887.1| hypothetical protein MELLADRAFT_110505 [Melampsora larici-populina
98AG31]
Length = 385
Score = 162 bits (409), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 75/143 (52%), Positives = 101/143 (70%), Gaps = 1/143 (0%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVLE 120
AP EAEAQCA + K G VY +EDMD LTFG+ +LLRH+TFSEARK+P+ +L KVL
Sbjct: 156 APSEAEAQCAELCKGGLVYGAGSEDMDTLTFGTPLLLRHLTFSEARKVPINTVNLSKVLA 215
Query: 121 GMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENI-DTKKYTVPEG 179
G++L+ E FID CIL GCDY D ++G+ K A++LIKEH S+E +++++ T K PE
Sbjct: 216 GLDLTMERFIDFCILCGCDYVDPLKGVAAKTALKLIKEHGSLEAVVDHLQQTGKNPPPED 275
Query: 180 WLYKEARELFRHPEVADPETIEF 202
W + EA+ELF P+V E I+
Sbjct: 276 WPWAEAKELFVKPDVIKSEDIKL 298
Score = 122 bits (307), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 62/97 (63%), Positives = 73/97 (75%), Gaps = 8/97 (8%)
Query: 305 LVADVAPSSIRES-------RKICIDASMSLYQFLIAVRS-EGNQLMSVDGEPTSHLMGT 356
L+ D+AP +I +S RK+ IDASMS+YQFLIAVR +G QLM+ GE TSHLMG
Sbjct: 9 LINDLAPDAITQSEIKTLFGRKVAIDASMSIYQFLIAVRQQDGQQLMNEAGETTSHLMGF 68
Query: 357 FYRTIRLVEHGLKPIYVFDGKPPTLKSGELNKRMEKR 393
FYRTIR+ E+G+KP YVFDGKPP LKSG L KR EKR
Sbjct: 69 FYRTIRMAENGIKPAYVFDGKPPQLKSGVLAKRFEKR 105
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 35/75 (46%), Positives = 51/75 (68%), Gaps = 1/75 (1%)
Query: 232 FIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENI-DTKKYTVPEGWLYKEARE 290
FID CIL GCDY D ++G+ K A++LIKEH S+E +++++ T K PE W + EA+E
Sbjct: 224 FIDFCILCGCDYVDPLKGVAAKTALKLIKEHGSLEAVVDHLQQTGKNPPPEDWPWAEAKE 283
Query: 291 LFRHPEIADPETIEL 305
LF P++ E I+L
Sbjct: 284 LFVKPDVIKSEDIKL 298
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/67 (46%), Positives = 40/67 (59%), Gaps = 3/67 (4%)
Query: 405 EQGKLKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSTTTQGRLDSFFTI---RR 461
E KL+W+ PD DGLV++L +K F E+R+R G KL A + QGRLD FF +
Sbjct: 294 EDIKLEWNMPDVDGLVEFLVKEKGFDEERVRKGTNKLKLAMTQKQQGRLDGFFKAAPKKP 353
Query: 462 EEKRKSR 468
EE K R
Sbjct: 354 EETSKKR 360
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 25/51 (49%), Positives = 34/51 (66%)
Query: 1 MTLKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSSTTQGRLDSFF 51
+ L+W+ PD DGLV++L +K F E+R+R G KL A + QGRLD FF
Sbjct: 296 IKLEWNMPDVDGLVEFLVKEKGFDEERVRKGTNKLKLAMTQKQQGRLDGFF 346
>gi|255076159|ref|XP_002501754.1| flap endonuclease-1 [Micromonas sp. RCC299]
gi|317374911|sp|C1E3X9.1|FEN1_MICSR RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|226517018|gb|ACO63012.1| flap endonuclease-1 [Micromonas sp. RCC299]
Length = 384
Score = 161 bits (408), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 74/134 (55%), Positives = 103/134 (76%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVLE 120
APCEAEA CAA+ KAG VYA A+EDMD L F + L R++ +++ P+ EF +K+L
Sbjct: 156 APCEAEATCAALCKAGLVYAAASEDMDTLCFSTPKLARNLMAPSSQEKPILEFDFDKLLA 215
Query: 121 GMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGW 180
G+EL+ ++FID+CIL GCDYCDSI+GIGP A++ IK++ +IE +LE++D +KY VP+ W
Sbjct: 216 GLELTWDQFIDVCILCGCDYCDSIKGIGPVNALKYIKQYGNIEGLLEHLDKEKYPVPDDW 275
Query: 181 LYKEARELFRHPEV 194
YKEAR LF++PEV
Sbjct: 276 PYKEARVLFKNPEV 289
Score = 117 bits (293), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 60/112 (53%), Positives = 79/112 (70%), Gaps = 8/112 (7%)
Query: 304 ELVADVAPSSIRE-------SRKICIDASMSLYQFLIAV-RSEGNQLMSVDGEPTSHLMG 355
+L++D AP +RE RK+ IDASM +YQF++ V RS QL + GE TSHL G
Sbjct: 8 KLLSDYAPGCMREQKFEGYLDRKVAIDASMHIYQFMMVVGRSGEQQLTNEAGEVTSHLQG 67
Query: 356 TFYRTIRLVEHGLKPIYVFDGKPPTLKSGELNKRMEKREDAQKALAKAQEQG 407
F RT+R+++ G+KP+YVFDGKPPT+K GEL KR +KRE A+ AL KA+E G
Sbjct: 68 MFTRTLRMLKAGIKPVYVFDGKPPTMKGGELAKRKDKREAAESALEKAKEAG 119
Score = 97.1 bits (240), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 43/82 (52%), Positives = 62/82 (75%), Gaps = 1/82 (1%)
Query: 225 AIELLYS-FIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGW 283
+EL + FID+CIL GCDYCDSI+GIGP A++ IK++ +IE +LE++D +KY VP+ W
Sbjct: 216 GLELTWDQFIDVCILCGCDYCDSIKGIGPVNALKYIKQYGNIEGLLEHLDKEKYPVPDDW 275
Query: 284 LYKEARELFRHPEIADPETIEL 305
YKEAR LF++PE+ + + L
Sbjct: 276 PYKEARVLFKNPEVVQTDGLTL 297
Score = 64.3 bits (155), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 33/67 (49%), Positives = 44/67 (65%), Gaps = 5/67 (7%)
Query: 1 MTLKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSSTTQGRLDSFF---TIRREE 57
+TLKW+ PDE+ +V +LCG+K+F EDRIR L KARS Q RL++FF T++
Sbjct: 295 LTLKWTAPDEEAVVAFLCGEKSFNEDRIRKQLADLKKARSQGGQNRLETFFGAATVKSST 354
Query: 58 --KRKAP 62
KRK P
Sbjct: 355 VGKRKEP 361
Score = 60.8 bits (146), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/49 (55%), Positives = 35/49 (71%)
Query: 409 LKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSTTTQGRLDSFF 457
LKW+ PDE+ +V +LCG+K+F EDRIR L KARS Q RL++FF
Sbjct: 297 LKWTAPDEEAVVAFLCGEKSFNEDRIRKQLADLKKARSQGGQNRLETFF 345
>gi|390603405|gb|EIN12797.1| PIN domain-like protein [Punctularia strigosozonata HHB-11173 SS5]
Length = 384
Score = 161 bits (408), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 72/147 (48%), Positives = 104/147 (70%), Gaps = 5/147 (3%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVLE 120
AP EAEAQCA + + GKVYA +EDMD LTF + ILLRH+TFSEA+K P+ E +L K LE
Sbjct: 156 APSEAEAQCAELARGGKVYAAGSEDMDTLTFNAPILLRHLTFSEAKKTPISEINLAKALE 215
Query: 121 GMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTK-----KYT 175
G+++ +FIDLCILLGCDY + I+G+GPK A++LI+EH + ++E++ K
Sbjct: 216 GLQMDMSQFIDLCILLGCDYLEPIKGVGPKTALKLIREHGGLAGVMEHLREKGKGKGGVQ 275
Query: 176 VPEGWLYKEARELFRHPEVADPETIEF 202
+PE W ++EA++LF P+V + ++
Sbjct: 276 IPEYWPWEEAKKLFEKPDVEPADEVQL 302
Score = 111 bits (277), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 55/94 (58%), Positives = 69/94 (73%), Gaps = 8/94 (8%)
Query: 305 LVADVAPSSIRE-------SRKICIDASMSLYQFLIAVRSEGNQLMSVD-GEPTSHLMGT 356
L+ + AP +I E RK+ IDASMS+YQFLIAVR + ++++ D GE TSHLMG
Sbjct: 9 LINEHAPKAITEHDIKTLFGRKVAIDASMSIYQFLIAVRQKDGEMLTNDSGETTSHLMGF 68
Query: 357 FYRTIRLVEHGLKPIYVFDGKPPTLKSGELNKRM 390
FYRTIR+VE+G+KP Y+FDGKPP LKSG L KR
Sbjct: 69 FYRTIRIVENGIKPAYIFDGKPPELKSGVLAKRF 102
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 33/82 (40%), Positives = 55/82 (67%), Gaps = 5/82 (6%)
Query: 229 LYSFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTK-----KYTVPEGW 283
+ FIDLCILLGCDY + I+G+GPK A++LI+EH + ++E++ K +PE W
Sbjct: 221 MSQFIDLCILLGCDYLEPIKGVGPKTALKLIREHGGLAGVMEHLREKGKGKGGVQIPEYW 280
Query: 284 LYKEARELFRHPEIADPETIEL 305
++EA++LF P++ + ++L
Sbjct: 281 PWEEAKKLFEKPDVEPADEVQL 302
Score = 66.2 bits (160), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 33/80 (41%), Positives = 54/80 (67%), Gaps = 4/80 (5%)
Query: 3 LKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSSTTQGRLDSFFTIR-REEKRKA 61
L+W +PD +GLV++L +K F E+R+R GA+KL K ++ QGRLD FFT++ ++ +KA
Sbjct: 302 LEWKNPDVEGLVQFLVVEKGFNEERVRKGAEKLTKFLNAKQQGRLDGFFTVQPKKSPQKA 361
Query: 62 PCEAEAQCAAM---VKAGKV 78
P + +++ A V+ G V
Sbjct: 362 PPKGKSKEAGTKRKVRLGNV 381
Score = 62.0 bits (149), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 26/53 (49%), Positives = 39/53 (73%)
Query: 408 KLKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSTTTQGRLDSFFTIR 460
+L+W +PD +GLV++L +K F E+R+R GA+KL K + QGRLD FFT++
Sbjct: 301 QLEWKNPDVEGLVQFLVVEKGFNEERVRKGAEKLTKFLNAKQQGRLDGFFTVQ 353
>gi|322700750|gb|EFY92503.1| DNA-repair protein rad2 [Metarhizium acridum CQMa 102]
Length = 426
Score = 161 bits (408), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 81/168 (48%), Positives = 106/168 (63%), Gaps = 34/168 (20%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVLE 120
AP EAEAQCA + +AGKVYA A+EDMD L F + ILLRH+TFSE RK P+QE HL+KVLE
Sbjct: 155 APTEAEAQCAVLARAGKVYAAASEDMDTLCFNTPILLRHLTFSEQRKEPIQEIHLDKVLE 214
Query: 121 GMELSHEE-------------------------------FIDLCILLGCDYCDSIRGIGP 149
G+ + + F+DLCILLGCDY D + IGP
Sbjct: 215 GLNMERSQVSFPTSKIEILGYYDGKFVRLTKALRLQKTKFVDLCILLGCDYLDPVPKIGP 274
Query: 150 KRAIELIKEHRSIEKILENID---TKKYTVPEGWLYKEARELFRHPEV 194
A++LI+EH ++EK+++ I+ KKYT+PE W YK+AR+LF P+V
Sbjct: 275 TTALKLIREHGTLEKVVDAIERDPKKKYTLPEDWPYKDARDLFFEPDV 322
Score = 132 bits (333), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 61/112 (54%), Positives = 85/112 (75%), Gaps = 7/112 (6%)
Query: 303 IELVADVAPSSIRES-------RKICIDASMSLYQFLIAVRSEGNQLMSVDGEPTSHLMG 355
+++ + AP +I+E RK+ IDASMS+Y FLIAVRS+G QLM+ GE TSHLMG
Sbjct: 7 FQIIKEEAPEAIKEGEIKNHFGRKVAIDASMSIYSFLIAVRSDGQQLMNESGETTSHLMG 66
Query: 356 TFYRTIRLVEHGLKPIYVFDGKPPTLKSGELNKRMEKREDAQKALAKAQEQG 407
FYRT+R+V++G+KP+YVFDG PP LKSGEL KR +++++A + L +A+E G
Sbjct: 67 MFYRTLRMVDNGIKPLYVFDGAPPKLKSGELAKRFQRKQEATEGLEEAKETG 118
Score = 86.3 bits (212), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 37/69 (53%), Positives = 53/69 (76%), Gaps = 3/69 (4%)
Query: 232 FIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENID---TKKYTVPEGWLYKEA 288
F+DLCILLGCDY D + IGP A++LI+EH ++EK+++ I+ KKYT+PE W YK+A
Sbjct: 254 FVDLCILLGCDYLDPVPKIGPTTALKLIREHGTLEKVVDAIERDPKKKYTLPEDWPYKDA 313
Query: 289 RELFRHPEI 297
R+LF P++
Sbjct: 314 RDLFFEPDV 322
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 23/49 (46%), Positives = 31/49 (63%)
Query: 409 LKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSTTTQGRLDSFF 457
KW PD +GLV +L +K F+EDR+R A +L K T+ Q RL+ FF
Sbjct: 332 FKWDKPDVEGLVTFLVTEKGFSEDRVRGAAARLEKNLKTSQQARLEGFF 380
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 22/49 (44%), Positives = 31/49 (63%)
Query: 3 LKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSSTTQGRLDSFF 51
KW PD +GLV +L +K F+EDR+R A +L K ++ Q RL+ FF
Sbjct: 332 FKWDKPDVEGLVTFLVTEKGFSEDRVRGAAARLEKNLKTSQQARLEGFF 380
>gi|302843818|ref|XP_002953450.1| nuclease, Rad2 family [Volvox carteri f. nagariensis]
gi|300261209|gb|EFJ45423.1| nuclease, Rad2 family [Volvox carteri f. nagariensis]
Length = 397
Score = 161 bits (407), Expect = 8e-37, Method: Compositional matrix adjust.
Identities = 75/135 (55%), Positives = 98/135 (72%)
Query: 60 KAPCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVL 119
+AP EAEAQCA M KAG VY ATEDMDALTFG+ ++RH+ + +PVQE L
Sbjct: 155 EAPSEAEAQCAEMAKAGLVYGLATEDMDALTFGAPRVIRHLMAPSSSNVPVQEIDRAVAL 214
Query: 120 EGMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEG 179
+ + L ++FID+CIL+GCDYC +IRGIG RA++LIK+H SIE ILE +D K+ VPE
Sbjct: 215 QELGLDDDQFIDMCILMGCDYCGTIRGIGAVRALQLIKKHGSIEAILEELDKAKFPVPEP 274
Query: 180 WLYKEARELFRHPEV 194
+ YKE+ E F++PEV
Sbjct: 275 FPYKESHEFFKNPEV 289
Score = 113 bits (283), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 55/112 (49%), Positives = 79/112 (70%), Gaps = 8/112 (7%)
Query: 304 ELVADVAPSSIRES-------RKICIDASMSLYQFLIAVRSEGNQLMSVD-GEPTSHLMG 355
+L+ D AP I+E+ RK+ +DASM +YQF++ V +G+QL++ + G+ TSHL G
Sbjct: 8 KLLGDNAPGCIKETKFENLFGRKVAVDASMHIYQFMVVVGRQGDQLLTNEAGDITSHLQG 67
Query: 356 TFYRTIRLVEHGLKPIYVFDGKPPTLKSGELNKRMEKREDAQKALAKAQEQG 407
F+RT R++E G+KP+YVFDGKPP LK +L R E+R DA +AL KA+E G
Sbjct: 68 MFFRTARMLEAGIKPVYVFDGKPPQLKQDQLAMRSERRADANEALEKAKEAG 119
Score = 95.5 bits (236), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 40/66 (60%), Positives = 53/66 (80%)
Query: 232 FIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGWLYKEAREL 291
FID+CIL+GCDYC +IRGIG RA++LIK+H SIE ILE +D K+ VPE + YKE+ E
Sbjct: 224 FIDMCILMGCDYCGTIRGIGAVRALQLIKKHGSIEAILEELDKAKFPVPEPFPYKESHEF 283
Query: 292 FRHPEI 297
F++PE+
Sbjct: 284 FKNPEV 289
Score = 64.7 bits (156), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 26/59 (44%), Positives = 40/59 (67%)
Query: 400 LAKAQEQGKLKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSTTTQGRLDSFFT 458
+ A E +LKWS PDE+GLV++L +KNF+E R+R ++ + + QGR+D+FFT
Sbjct: 289 VTPAAELPQLKWSSPDEEGLVQFLVNEKNFSEQRVRAAVSRIKQHKGKANQGRMDTFFT 347
Score = 63.5 bits (153), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 24/50 (48%), Positives = 36/50 (72%)
Query: 3 LKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSSTTQGRLDSFFT 52
LKWS PDE+GLV++L +KNF+E R+R ++ + + QGR+D+FFT
Sbjct: 298 LKWSSPDEEGLVQFLVNEKNFSEQRVRAAVSRIKQHKGKANQGRMDTFFT 347
>gi|403162368|ref|XP_003322600.2| flap endonuclease 1-A [Puccinia graminis f. sp. tritici CRL
75-36-700-3]
gi|375172578|gb|EFP78181.2| flap endonuclease 1-A [Puccinia graminis f. sp. tritici CRL
75-36-700-3]
Length = 387
Score = 161 bits (407), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 73/136 (53%), Positives = 101/136 (74%), Gaps = 1/136 (0%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVLE 120
AP EAEAQCA + + G VY +EDMD LTFG+ ILLRH+TFSEARK+P+ +LEKVL
Sbjct: 156 APSEAEAQCAELCRGGLVYGAGSEDMDTLTFGTPILLRHLTFSEARKMPILTVNLEKVLS 215
Query: 121 GMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENI-DTKKYTVPEG 179
G+EL+ E+FI+ C+L GCDY D ++G+ K A +L+ EH S+EK++E++ ++ K PE
Sbjct: 216 GLELTMEQFIEFCVLCGCDYVDPLKGVAAKTAHKLMMEHGSLEKVVEHLRESSKNPPPED 275
Query: 180 WLYKEARELFRHPEVA 195
W ++EAR LF+ PEV
Sbjct: 276 WPWEEARALFQKPEVT 291
Score = 124 bits (311), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 60/98 (61%), Positives = 76/98 (77%), Gaps = 8/98 (8%)
Query: 305 LVADVAPSSIRES-------RKICIDASMSLYQFLIAVRS-EGNQLMSVDGEPTSHLMGT 356
L+ DVAP +I +S RK+ IDASMS+YQFLIAVR +G QLM+ GE TSHLMG
Sbjct: 9 LINDVAPQAITQSEIKTLFGRKVAIDASMSIYQFLIAVRQQDGQQLMNEAGETTSHLMGL 68
Query: 357 FYRTIRLVEHGLKPIYVFDGKPPTLKSGELNKRMEKRE 394
FYRTIR+V++G+KP YVFDGKPP +K+G L+KR E+R+
Sbjct: 69 FYRTIRMVDNGIKPAYVFDGKPPAMKAGVLSKRFERRQ 106
Score = 72.4 bits (176), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 31/75 (41%), Positives = 51/75 (68%), Gaps = 1/75 (1%)
Query: 232 FIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENI-DTKKYTVPEGWLYKEARE 290
FI+ C+L GCDY D ++G+ K A +L+ EH S+EK++E++ ++ K PE W ++EAR
Sbjct: 224 FIEFCVLCGCDYVDPLKGVAAKTAHKLMMEHGSLEKVVEHLRESSKNPPPEDWPWEEARA 283
Query: 291 LFRHPEIADPETIEL 305
LF+ PE+ ++L
Sbjct: 284 LFQKPEVTPSSELKL 298
Score = 59.3 bits (142), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 29/67 (43%), Positives = 39/67 (58%)
Query: 391 EKREDAQKALAKAQEQGKLKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSTTTQ 450
E R QK + KL+W PD +GLV +L +K F E+R++ GA KL +A + Q
Sbjct: 280 EARALFQKPEVTPSSELKLEWKKPDVEGLVDFLVKEKGFDEERVKKGAAKLTQAMTQKQQ 339
Query: 451 GRLDSFF 457
GRLD FF
Sbjct: 340 GRLDGFF 346
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/51 (47%), Positives = 34/51 (66%)
Query: 1 MTLKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSSTTQGRLDSFF 51
+ L+W PD +GLV +L +K F E+R++ GA KL +A + QGRLD FF
Sbjct: 296 LKLEWKKPDVEGLVDFLVKEKGFDEERVKKGAAKLTQAMTQKQQGRLDGFF 346
>gi|300120156|emb|CBK19710.2| unnamed protein product [Blastocystis hominis]
Length = 370
Score = 160 bits (406), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 80/145 (55%), Positives = 106/145 (73%), Gaps = 4/145 (2%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQ---EFHLEK 117
A EAE+QCA + K KV+A A+EDMD+LTFG+ +L+RH+T S+ K Q E L +
Sbjct: 159 AASEAESQCAELAKKKKVWAMASEDMDSLTFGTPVLIRHLTKSQGAKKDAQSILEVDLAE 218
Query: 118 VLEGMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVP 177
VLE M+LS +EFIDLCIL GCDYCD IRGIG +A + I+++R+IEK++EN+ T KY VP
Sbjct: 219 VLEAMKLSMDEFIDLCILCGCDYCDGIRGIGQVKAYQFIQKYRTIEKVIENL-TDKYQVP 277
Query: 178 EGWLYKEARELFRHPEVADPETIEF 202
E W Y++ARELF++P V E IE
Sbjct: 278 ENWPYQKARELFKNPLVTPAEEIEV 302
Score = 96.3 bits (238), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 43/74 (58%), Positives = 58/74 (78%), Gaps = 1/74 (1%)
Query: 232 FIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGWLYKEAREL 291
FIDLCIL GCDYCD IRGIG +A + I+++R+IEK++EN+ T KY VPE W Y++AREL
Sbjct: 230 FIDLCILCGCDYCDGIRGIGQVKAYQFIQKYRTIEKVIENL-TDKYQVPENWPYQKAREL 288
Query: 292 FRHPEIADPETIEL 305
F++P + E IE+
Sbjct: 289 FKNPLVTPAEEIEV 302
Score = 91.7 bits (226), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 48/113 (42%), Positives = 71/113 (62%), Gaps = 13/113 (11%)
Query: 305 LVADVAPSSIRE-------SRKICIDASMSLYQFLIAVRSEGNQLMSV-----DGEPTSH 352
L+ AP +++E R I IDAS+ +YQ L+A+R NQ SV +GE TSH
Sbjct: 9 LITAYAPKAMKEVESKRYIGRMIAIDASVMIYQSLVAIRM-NNQFASVMLTNAEGEVTSH 67
Query: 353 LMGTFYRTIRLVEHGLKPIYVFDGKPPTLKSGELNKRMEKREDAQKALAKAQE 405
+ G +TI+L+E G+KP++VF+GKPP +K EL +R + RE A++ L A+E
Sbjct: 68 IQGILSKTIKLMEDGIKPVFVFEGKPPEMKQNELERRKQLREKAEEELKDAKE 120
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 36/107 (33%), Positives = 54/107 (50%), Gaps = 9/107 (8%)
Query: 358 YRTIRLVEHGLKPIYVFDGKPPTLKSGELNKRMEKREDAQKALAKAQEQGKLKWSDPDED 417
YRTI V L Y P K+ EL K L E+ ++K+ + D
Sbjct: 260 YRTIEKVIENLTDKYQVPENWPYQKARELFKN---------PLVTPAEEIEVKFGEVDRK 310
Query: 418 GLVKYLCGDKNFAEDRIRNGAKKLLKARSTTTQGRLDSFFTIRREEK 464
GLV++L K F +R+ N +L+KARS Q R+DSFFT++ +++
Sbjct: 311 GLVEFLVDAKGFNAERVDNYIDRLIKARSKCQQKRMDSFFTVKSQKR 357
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 40/65 (61%)
Query: 1 MTLKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSSTTQGRLDSFFTIRREEKRK 60
+ +K+ + D GLV++L K F +R+ N +L+KARS Q R+DSFFT++ +++
Sbjct: 300 IEVKFGEVDRKGLVEFLVDAKGFNAERVDNYIDRLIKARSKCQQKRMDSFFTVKSQKRTA 359
Query: 61 APCEA 65
EA
Sbjct: 360 NGKEA 364
>gi|428169402|gb|EKX38336.1| flap endonuclease 1 [Guillardia theta CCMP2712]
Length = 435
Score = 160 bits (405), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 74/136 (54%), Positives = 101/136 (74%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVLE 120
AP EAEAQCAA+ K G VYA+ATEDMDAL GS IL+R +T SEARKLPV E+HL++VL
Sbjct: 187 APSEAEAQCAALAKNGLVYASATEDMDALCCGSPILVRRLTMSEARKLPVLEYHLDQVLS 246
Query: 121 GMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGW 180
+ L+ +F+D CIL GCD+ ++I+GIGPK A+ I++H +IE +E+++T K+ VP+ +
Sbjct: 247 SLGLNMTQFVDFCILCGCDFSETIKGIGPKSALHGIRKHGNIESFIESLNTSKFVVPDPF 306
Query: 181 LYKEARELFRHPEVAD 196
E R+L PEV D
Sbjct: 307 PIDEIRQLLTTPEVVD 322
Score = 110 bits (274), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 52/100 (52%), Positives = 72/100 (72%), Gaps = 5/100 (5%)
Query: 316 ESRKICIDASMSLYQFLIAVRSEGNQ-----LMSVDGEPTSHLMGTFYRTIRLVEHGLKP 370
+ +K+ IDASM++YQFLIAVRS G L S GE TSHL G F+RTI +V+ G++P
Sbjct: 54 QGKKLAIDASMAMYQFLIAVRSTGENGVAQPLTSASGEETSHLQGFFWRTIAMVKAGIRP 113
Query: 371 IYVFDGKPPTLKSGELNKRMEKREDAQKALAKAQEQGKLK 410
+YVFDGKPP+LKSGE+ R +R++ K L +A E+G ++
Sbjct: 114 LYVFDGKPPSLKSGEIASRNLRRDEGAKRLQEATEEGNVE 153
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 31/83 (37%), Positives = 53/83 (63%)
Query: 229 LYSFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGWLYKEA 288
+ F+D CIL GCD+ ++I+GIGPK A+ I++H +IE +E+++T K+ VP+ + E
Sbjct: 252 MTQFVDFCILCGCDFSETIKGIGPKSALHGIRKHGNIESFIESLNTSKFVVPDPFPIDEI 311
Query: 289 RELFRHPEIADPETIELVADVAP 311
R+L PE+ D + + + P
Sbjct: 312 RQLLTTPEVVDMGNLSIDWNAEP 334
Score = 52.8 bits (125), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 40/56 (71%), Gaps = 1/56 (1%)
Query: 1 MTLKW-SDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSSTTQGRLDSFFTIRR 55
+++ W ++PDE+GL+++L +K F+E R+R G + + KA+ QG+LD FF+ ++
Sbjct: 326 LSIDWNAEPDEEGLIEFLVKEKGFSEKRVRGGLEAIKKAKMVKPQGKLDMFFSPKK 381
Score = 52.4 bits (124), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 40/60 (66%), Gaps = 1/60 (1%)
Query: 409 LKW-SDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSTTTQGRLDSFFTIRREEKRKS 467
+ W ++PDE+GL+++L +K F+E R+R G + + KA+ QG+LD FF+ ++ + S
Sbjct: 328 IDWNAEPDEEGLIEFLVKEKGFSEKRVRGGLEAIKKAKMVKPQGKLDMFFSPKKTTPQAS 387
>gi|392566068|gb|EIW59244.1| PIN domain-like protein [Trametes versicolor FP-101664 SS1]
Length = 406
Score = 160 bits (404), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 75/158 (47%), Positives = 106/158 (67%), Gaps = 16/158 (10%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVLE 120
AP EAEAQCA + + GKVYA +EDMD LTFG+ IL RH+TFSEARK P+ E +L+K LE
Sbjct: 156 APSEAEAQCAELARGGKVYAAGSEDMDTLTFGAPILYRHLTFSEARKTPISEINLQKALE 215
Query: 121 GMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYT----- 175
G+E++ +F +LCILLGCDY + I+G+GPK A++LI+EH S+ KILE++ K
Sbjct: 216 GLEMNMSQFTELCILLGCDYLEPIKGVGPKSALKLIREHGSLGKILEHLKEKAAEKEEAA 275
Query: 176 -----------VPEGWLYKEARELFRHPEVADPETIEF 202
+PE W +++A+ +F P+V + +E
Sbjct: 276 EEGKKKKGGVQIPEEWPWEQAKAIFLKPDVTPADELEL 313
Score = 127 bits (318), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 64/111 (57%), Positives = 84/111 (75%), Gaps = 8/111 (7%)
Query: 305 LVADVAPSSIRE-------SRKICIDASMSLYQFLIAVRSEGNQLMSVD-GEPTSHLMGT 356
L+A+ AP + +E RK+ +DASMS+YQFLIAVR + +L++ D GE TSHLMG
Sbjct: 9 LLAEHAPKAFQEHEMKTLFGRKVAVDASMSIYQFLIAVRQKDGELLTNDAGETTSHLMGF 68
Query: 357 FYRTIRLVEHGLKPIYVFDGKPPTLKSGELNKRMEKREDAQKALAKAQEQG 407
FYRTIR+VE+G+KP YVFDGKPP LKSG L+KR EKRE+A++ +A+E G
Sbjct: 69 FYRTIRMVENGIKPAYVFDGKPPELKSGVLSKRFEKREEAKEDNEEAKETG 119
Score = 72.0 bits (175), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 34/93 (36%), Positives = 55/93 (59%), Gaps = 16/93 (17%)
Query: 229 LYSFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYT---------- 278
+ F +LCILLGCDY + I+G+GPK A++LI+EH S+ KILE++ K
Sbjct: 221 MSQFTELCILLGCDYLEPIKGVGPKSALKLIREHGSLGKILEHLKEKAAEKEEAAEEGKK 280
Query: 279 ------VPEGWLYKEARELFRHPEIADPETIEL 305
+PE W +++A+ +F P++ + +EL
Sbjct: 281 KKGGVQIPEEWPWEQAKAIFLKPDVTPADELEL 313
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/54 (48%), Positives = 37/54 (68%)
Query: 1 MTLKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSSTTQGRLDSFFTIR 54
+ L+W P+ DGLV +L +K F E+R+R GA+KL K ++ QGRLD FFT +
Sbjct: 311 LELEWKSPNVDGLVDFLVREKGFNEERVRKGAEKLAKFLNAKQQGRLDGFFTAK 364
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 26/52 (50%), Positives = 35/52 (67%)
Query: 409 LKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSTTTQGRLDSFFTIR 460
L+W P+ DGLV +L +K F E+R+R GA+KL K + QGRLD FFT +
Sbjct: 313 LEWKSPNVDGLVDFLVREKGFNEERVRKGAEKLAKFLNAKQQGRLDGFFTAK 364
>gi|115456427|ref|NP_001051814.1| Os03g0834000 [Oryza sativa Japonica Group]
gi|62510683|sp|Q75LI2.1|FEN12_ORYSJ RecName: Full=Flap endonuclease 1-B; Short=FEN-1-B; AltName:
Full=Flap structure-specific endonuclease 1-B; AltName:
Full=OsFEN-1b
gi|317374867|sp|B8AMS4.1|FEN12_ORYSI RecName: Full=Flap endonuclease 1-B; Short=FEN-1-B; AltName:
Full=Flap structure-specific endonuclease 1-B
gi|40714676|gb|AAR88582.1| flap endonuclease-1b [Oryza sativa Japonica Group]
gi|108711942|gb|ABF99737.1| Flap endonuclease-1b, putative, expressed [Oryza sativa Japonica
Group]
gi|113550285|dbj|BAF13728.1| Os03g0834000 [Oryza sativa Japonica Group]
gi|215692762|dbj|BAG88230.1| unnamed protein product [Oryza sativa Japonica Group]
gi|218194043|gb|EEC76470.1| hypothetical protein OsI_14202 [Oryza sativa Indica Group]
gi|222626117|gb|EEE60249.1| hypothetical protein OsJ_13256 [Oryza sativa Japonica Group]
Length = 412
Score = 159 bits (402), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 72/135 (53%), Positives = 103/135 (76%)
Query: 60 KAPCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVL 119
+AP EAEAQCAA+ + KV+A A+EDMD+LTFG+ LRH+T ++ PV EF + KVL
Sbjct: 155 QAPGEAEAQCAALCENHKVFAIASEDMDSLTFGARRFLRHLTDLSFKRSPVTEFEVSKVL 214
Query: 120 EGMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEG 179
E + L+ ++FIDLCIL GCDYC++IRGIG +RA++LI++H IE++++N+ +Y+VPE
Sbjct: 215 EELGLTMDQFIDLCILSGCDYCENIRGIGGQRALKLIRQHGYIEEVVQNLSQTRYSVPED 274
Query: 180 WLYKEARELFRHPEV 194
W Y+E R LF+ P V
Sbjct: 275 WPYQEVRALFKEPNV 289
Score = 92.8 bits (229), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 52/127 (40%), Positives = 81/127 (63%), Gaps = 15/127 (11%)
Query: 304 ELVADVAP-SSIRE------SRKICIDASMSLYQFLIAVRSEGNQLMSVD-GEPTSHLMG 355
+L+A+ AP +++R R + ID S+S+YQFLI V +G ++++ + GE TSHL G
Sbjct: 8 KLLAEHAPGAAVRRRVEDYRGRVVAIDTSLSIYQFLIVVGRKGTEVLTNEAGEVTSHLQG 67
Query: 356 TFYRTIRLVEHGLKPIYVFDGKPPTLKSGELNKRMEKREDAQKALAKAQEQGKLKWSDPD 415
RT+R++E G+KP++VFDG+PP +K EL KR KR+ + + L +A E G D
Sbjct: 68 MLNRTVRILEAGIKPVFVFDGEPPDMKKKELAKRSLKRDGSSEDLNRAIEVG-------D 120
Query: 416 EDGLVKY 422
ED + K+
Sbjct: 121 EDLIEKF 127
Score = 90.9 bits (224), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 36/66 (54%), Positives = 53/66 (80%)
Query: 232 FIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGWLYKEAREL 291
FIDLCIL GCDYC++IRGIG +RA++LI++H IE++++N+ +Y+VPE W Y+E R L
Sbjct: 224 FIDLCILSGCDYCENIRGIGGQRALKLIRQHGYIEEVVQNLSQTRYSVPEDWPYQEVRAL 283
Query: 292 FRHPEI 297
F+ P +
Sbjct: 284 FKEPNV 289
Score = 41.6 bits (96), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 25/42 (59%)
Query: 5 WSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSSTTQGR 46
W+ PDE+GL+ +L + NF+ DR+ +K+ A + GR
Sbjct: 298 WTPPDEEGLINFLAAENNFSPDRVVKSVEKIKAANDKFSLGR 339
Score = 41.2 bits (95), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 25/42 (59%)
Query: 411 WSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSTTTQGR 452
W+ PDE+GL+ +L + NF+ DR+ +K+ A + GR
Sbjct: 298 WTPPDEEGLINFLAAENNFSPDRVVKSVEKIKAANDKFSLGR 339
>gi|29467052|dbj|BAC66965.1| flap endonuclease-1b [Oryza sativa Japonica Group]
gi|37496995|dbj|BAC98428.1| flap endonuclease-1b [Oryza sativa Japonica Group]
Length = 412
Score = 159 bits (402), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 72/135 (53%), Positives = 103/135 (76%)
Query: 60 KAPCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVL 119
+AP EAEAQCAA+ + KV+A A+EDMD+LTFG+ LRH+T ++ PV EF + KVL
Sbjct: 155 QAPGEAEAQCAALCENHKVFAIASEDMDSLTFGARRFLRHLTDLSFKRSPVTEFEVSKVL 214
Query: 120 EGMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEG 179
E + L+ ++FIDLCIL GCDYC++IRGIG +RA++LI++H IE++++N+ +Y+VPE
Sbjct: 215 EELGLTMDQFIDLCILSGCDYCENIRGIGGQRALKLIRQHGYIEEVVQNLSQTRYSVPED 274
Query: 180 WLYKEARELFRHPEV 194
W Y+E R LF+ P V
Sbjct: 275 WPYQEVRALFKEPNV 289
Score = 94.7 bits (234), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 53/127 (41%), Positives = 82/127 (64%), Gaps = 15/127 (11%)
Query: 304 ELVADVAP-SSIRE------SRKICIDASMSLYQFLIAVRSEGNQLMSVD-GEPTSHLMG 355
+L+A+ AP +++R R + IDAS+S+YQFLI V +G ++++ + GE TSHL G
Sbjct: 8 KLLAEHAPGAAVRRRVEDYRGRVVAIDASLSIYQFLIVVGRKGTEVLTNEAGEVTSHLQG 67
Query: 356 TFYRTIRLVEHGLKPIYVFDGKPPTLKSGELNKRMEKREDAQKALAKAQEQGKLKWSDPD 415
RT+R++E G+KP++VFDG+PP +K EL KR KR+ + + L +A E G D
Sbjct: 68 MLNRTVRILEAGIKPVFVFDGEPPDMKKKELAKRSLKRDGSSEDLNRAIEVG-------D 120
Query: 416 EDGLVKY 422
ED + K+
Sbjct: 121 EDLIEKF 127
Score = 90.9 bits (224), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 36/66 (54%), Positives = 53/66 (80%)
Query: 232 FIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGWLYKEAREL 291
FIDLCIL GCDYC++IRGIG +RA++LI++H IE++++N+ +Y+VPE W Y+E R L
Sbjct: 224 FIDLCILSGCDYCENIRGIGGQRALKLIRQHGYIEEVVQNLSQTRYSVPEDWPYQEVRAL 283
Query: 292 FRHPEI 297
F+ P +
Sbjct: 284 FKEPNV 289
Score = 41.6 bits (96), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 25/42 (59%)
Query: 5 WSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSSTTQGR 46
W+ PDE+GL+ +L + NF+ DR+ +K+ A + GR
Sbjct: 298 WTPPDEEGLINFLAAENNFSPDRVVKSVEKIKAANDKFSLGR 339
Score = 41.2 bits (95), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 25/42 (59%)
Query: 411 WSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSTTTQGR 452
W+ PDE+GL+ +L + NF+ DR+ +K+ A + GR
Sbjct: 298 WTPPDEEGLINFLAAENNFSPDRVVKSVEKIKAANDKFSLGR 339
>gi|413932541|gb|AFW67092.1| hypothetical protein ZEAMMB73_718764 [Zea mays]
Length = 411
Score = 159 bits (402), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 73/135 (54%), Positives = 103/135 (76%)
Query: 60 KAPCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVL 119
+AP EAEAQCAA+ + +VYA A+EDMD LTFG+ LRH+T +K PV EF + KVL
Sbjct: 155 EAPGEAEAQCAALCENHQVYAVASEDMDTLTFGARRFLRHLTDLGYKKSPVTEFDVSKVL 214
Query: 120 EGMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEG 179
E + L+ ++FIDLCIL GCDYC++IRGIG +RA++LI++H IE++L+N++ +++VPE
Sbjct: 215 EELGLTMDQFIDLCILSGCDYCENIRGIGGQRALKLIRQHGCIEEVLQNLNQTRFSVPED 274
Query: 180 WLYKEARELFRHPEV 194
W Y+E R LF+ P V
Sbjct: 275 WPYQEVRTLFKEPNV 289
Score = 97.8 bits (242), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 55/127 (43%), Positives = 81/127 (63%), Gaps = 15/127 (11%)
Query: 304 ELVADVAPSSIRE-------SRKICIDASMSLYQFLIAVRSEGNQLMSVD-GEPTSHLMG 355
+L+A AP++ + R I +DAS+S+YQFL V +G++L++ + GE TSHL G
Sbjct: 8 KLLAQHAPTAAVQRRVEDYRGRVIAVDASVSIYQFLAVVGRKGSELLTNEAGEITSHLQG 67
Query: 356 TFYRTIRLVEHGLKPIYVFDGKPPTLKSGELNKRMEKREDAQKALAKAQEQGKLKWSDPD 415
RTIR++E G+KP++VFDG+PP +K EL KR KR+DA K L +A E G D
Sbjct: 68 MLNRTIRMLEAGIKPVFVFDGEPPEMKKKELAKRSLKRDDAIKDLNRAMEIG-------D 120
Query: 416 EDGLVKY 422
E+ + K+
Sbjct: 121 ENAIEKF 127
Score = 91.3 bits (225), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 36/66 (54%), Positives = 54/66 (81%)
Query: 232 FIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGWLYKEAREL 291
FIDLCIL GCDYC++IRGIG +RA++LI++H IE++L+N++ +++VPE W Y+E R L
Sbjct: 224 FIDLCILSGCDYCENIRGIGGQRALKLIRQHGCIEEVLQNLNQTRFSVPEDWPYQEVRTL 283
Query: 292 FRHPEI 297
F+ P +
Sbjct: 284 FKEPNV 289
Score = 41.2 bits (95), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 33/67 (49%), Gaps = 2/67 (2%)
Query: 3 LKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSSTTQGRLDSFFTIRREEKRKAP 62
W+ PD +GL+ +L + +F+ DR+ +K+ AR + GR+ + R +
Sbjct: 296 FTWTSPDPEGLMDFLSTENSFSPDRVTKAVEKIKVARDRYSPGRMKHLTPV--ASLRGSH 353
Query: 63 CEAEAQC 69
E E QC
Sbjct: 354 TEKEPQC 360
>gi|242032391|ref|XP_002463590.1| hypothetical protein SORBIDRAFT_01g002580 [Sorghum bicolor]
gi|241917444|gb|EER90588.1| hypothetical protein SORBIDRAFT_01g002580 [Sorghum bicolor]
Length = 477
Score = 158 bits (400), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 72/136 (52%), Positives = 105/136 (77%)
Query: 60 KAPCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVL 119
+AP EAEAQCAA+ + +VYA A+EDMD+LTFG+ LRH+T +K PV EF + KVL
Sbjct: 231 EAPGEAEAQCAALCENHQVYAVASEDMDSLTFGARRFLRHLTDLGYKKSPVTEFDVSKVL 290
Query: 120 EGMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEG 179
E + L+ ++FIDLCIL GCDYC++I+GIG +RA++LI++H IE++L+N++ +++VPE
Sbjct: 291 EELGLTMDQFIDLCILSGCDYCENIKGIGGQRALKLIRQHGCIEEVLQNLNQTRFSVPED 350
Query: 180 WLYKEARELFRHPEVA 195
W Y+E R LF+ P V+
Sbjct: 351 WPYQEVRTLFKEPNVS 366
Score = 90.5 bits (223), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 35/67 (52%), Positives = 55/67 (82%)
Query: 232 FIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGWLYKEAREL 291
FIDLCIL GCDYC++I+GIG +RA++LI++H IE++L+N++ +++VPE W Y+E R L
Sbjct: 300 FIDLCILSGCDYCENIKGIGGQRALKLIRQHGCIEEVLQNLNQTRFSVPEDWPYQEVRTL 359
Query: 292 FRHPEIA 298
F+ P ++
Sbjct: 360 FKEPNVS 366
Score = 70.9 bits (172), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 35/72 (48%), Positives = 47/72 (65%), Gaps = 7/72 (9%)
Query: 351 SHLMGTFYRTIRLVEHGLKPIYVFDGKPPTLKSGELNKRMEKREDAQKALAKAQEQGKLK 410
SHL G RT+R++E G+KP++VFDG+PP +K EL KR KR+DA K L +A E G
Sbjct: 139 SHLQGMLNRTVRMLEAGIKPVFVFDGEPPEMKKKELAKRSLKRDDATKDLNRAIEIG--- 195
Query: 411 WSDPDEDGLVKY 422
DED + K+
Sbjct: 196 ----DEDAVEKF 203
>gi|317374937|sp|C5WU23.2|FEN12_SORBI RecName: Full=Flap endonuclease 1-B; Short=FEN-1-B; AltName:
Full=Flap structure-specific endonuclease 1-B
Length = 428
Score = 158 bits (400), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 72/136 (52%), Positives = 105/136 (77%)
Query: 60 KAPCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVL 119
+AP EAEAQCAA+ + +VYA A+EDMD+LTFG+ LRH+T +K PV EF + KVL
Sbjct: 182 EAPGEAEAQCAALCENHQVYAVASEDMDSLTFGARRFLRHLTDLGYKKSPVTEFDVSKVL 241
Query: 120 EGMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEG 179
E + L+ ++FIDLCIL GCDYC++I+GIG +RA++LI++H IE++L+N++ +++VPE
Sbjct: 242 EELGLTMDQFIDLCILSGCDYCENIKGIGGQRALKLIRQHGCIEEVLQNLNQTRFSVPED 301
Query: 180 WLYKEARELFRHPEVA 195
W Y+E R LF+ P V+
Sbjct: 302 WPYQEVRTLFKEPNVS 317
Score = 90.5 bits (223), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 35/67 (52%), Positives = 55/67 (82%)
Query: 232 FIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGWLYKEAREL 291
FIDLCIL GCDYC++I+GIG +RA++LI++H IE++L+N++ +++VPE W Y+E R L
Sbjct: 251 FIDLCILSGCDYCENIKGIGGQRALKLIRQHGCIEEVLQNLNQTRFSVPEDWPYQEVRTL 310
Query: 292 FRHPEIA 298
F+ P ++
Sbjct: 311 FKEPNVS 317
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 52/134 (38%), Positives = 73/134 (54%), Gaps = 35/134 (26%)
Query: 317 SRKICIDASMSLYQFLIAVRSEGNQLMSVD-GEPT------------------------- 350
R I +DAS+S+YQFLI V +G++L++ + GE T
Sbjct: 28 GRVIAVDASLSIYQFLIVVGRKGSELLTNEAGEVTRQETSLALPVSDHCIPAYLTFHLCE 87
Query: 351 --SHLMGTFYRTIRLVEHGLKPIYVFDGKPPTLKSGELNKRMEKREDAQKALAKAQEQGK 408
SHL G RT+R++E G+KP++VFDG+PP +K EL KR KR+DA K L +A E G
Sbjct: 88 LCSHLQGMLNRTVRMLEAGIKPVFVFDGEPPEMKKKELAKRSLKRDDATKDLNRAIEIG- 146
Query: 409 LKWSDPDEDGLVKY 422
DED + K+
Sbjct: 147 ------DEDAVEKF 154
>gi|302415469|ref|XP_003005566.1| DNA-repair protein rad2 [Verticillium albo-atrum VaMs.102]
gi|261354982|gb|EEY17410.1| DNA-repair protein rad2 [Verticillium albo-atrum VaMs.102]
Length = 308
Score = 158 bits (400), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 71/138 (51%), Positives = 97/138 (70%), Gaps = 3/138 (2%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVLE 120
AP EAEAQCA + K GKVYA A+EDMD LTF + ILLRH+T+SE RK P+QE HL+KV+E
Sbjct: 155 APTEAEAQCAVLAKGGKVYAAASEDMDTLTFETPILLRHLTYSEQRKEPIQEIHLDKVME 214
Query: 121 GMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDT---KKYTVP 177
G+ + +F+DLCILLGCDY D + +GP A++LI+EH+++E +++ I KYT+P
Sbjct: 215 GLGMERNQFVDLCILLGCDYLDPVPKVGPSTALKLIREHKTLEGVVDYIKNDPKSKYTLP 274
Query: 178 EGWLYKEARELFRHPEVA 195
E W ++ P A
Sbjct: 275 EDWPFRRRARTVSQPRRA 292
Score = 132 bits (332), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 61/112 (54%), Positives = 86/112 (76%), Gaps = 7/112 (6%)
Query: 303 IELVADVAPSSIRES-------RKICIDASMSLYQFLIAVRSEGNQLMSVDGEPTSHLMG 355
+++ + AP +I+E RK+ IDASMS+Y FLIAVRS+G QLM+ GE TSHLMG
Sbjct: 7 FQILKEEAPDAIKEGEIKNQFGRKVAIDASMSIYSFLIAVRSDGQQLMNESGETTSHLMG 66
Query: 356 TFYRTIRLVEHGLKPIYVFDGKPPTLKSGELNKRMEKREDAQKALAKAQEQG 407
FYRT+R+V++G+KP+YVFDG PP LKSGEL KR +++++A++ L +A+E G
Sbjct: 67 MFYRTLRMVDNGIKPLYVFDGAPPKLKSGELAKRFQRKQEAKEGLEEAKETG 118
Score = 68.6 bits (166), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 29/70 (41%), Positives = 44/70 (62%), Gaps = 3/70 (4%)
Query: 232 FIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDT---KKYTVPEGWLYKEA 288
F+DLCILLGCDY D + +GP A++LI+EH+++E +++ I KYT+PE W ++
Sbjct: 223 FVDLCILLGCDYLDPVPKVGPSTALKLIREHKTLEGVVDYIKNDPKSKYTLPEDWPFRRR 282
Query: 289 RELFRHPEIA 298
P A
Sbjct: 283 ARTVSQPRRA 292
>gi|224006087|ref|XP_002292004.1| exonuclease [Thalassiosira pseudonana CCMP1335]
gi|317376197|sp|B8C6S5.1|FEN1_THAPS RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|220972523|gb|EED90855.1| exonuclease [Thalassiosira pseudonana CCMP1335]
Length = 390
Score = 158 bits (399), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 72/129 (55%), Positives = 101/129 (78%), Gaps = 2/129 (1%)
Query: 74 KAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVLEGMELSHEEFIDLC 133
++GKVYA ATEDMDALTF S +++R MTF+ A K VQ+ +K +EG+E++H++F+DLC
Sbjct: 175 RSGKVYAAATEDMDALTFRSPVMVRKMTFANASKSDVQQIFYDKAIEGLEITHDQFVDLC 234
Query: 134 ILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGWLYKEARELFRHPE 193
ILLGCDYCD+I+GIGPK A++LI+EH++IE IL++++ +KY VP+ +Y EAR LF H E
Sbjct: 235 ILLGCDYCDTIKGIGPKTALKLIREHKNIETILKHLNREKYVVPD--IYVEARRLFNHHE 292
Query: 194 VADPETIEF 202
V IE
Sbjct: 293 VLPDNEIEL 301
Score = 122 bits (307), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 65/132 (49%), Positives = 85/132 (64%), Gaps = 14/132 (10%)
Query: 304 ELVADVAPSSIRE-------SRKICIDASMSLYQFLIAVRSEGN-------QLMSVDGEP 349
+L++D AP S++E RK+ IDASM++YQFLIAVRS G L + DGE
Sbjct: 8 KLLSDEAPLSLKEVPLSHLHGRKLAIDASMAIYQFLIAVRSGGPGGQNAAMMLTNADGET 67
Query: 350 TSHLMGTFYRTIRLVEHGLKPIYVFDGKPPTLKSGELNKRMEKREDAQKALAKAQEQGKL 409
TSH+ G F RTIR + G++P+YVFDGKPP KSGEL KR EKR A++AL A+E G +
Sbjct: 68 TSHIQGIFNRTIRFISEGIRPVYVFDGKPPQFKSGELLKRREKRLKAEQALKAAEESGNI 127
Query: 410 KWSDPDEDGLVK 421
+ D LV+
Sbjct: 128 EEQDKQSKRLVR 139
Score = 96.3 bits (238), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 43/74 (58%), Positives = 59/74 (79%), Gaps = 2/74 (2%)
Query: 232 FIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGWLYKEAREL 291
F+DLCILLGCDYCD+I+GIGPK A++LI+EH++IE IL++++ +KY VP+ +Y EAR L
Sbjct: 230 FVDLCILLGCDYCDTIKGIGPKTALKLIREHKNIETILKHLNREKYVVPD--IYVEARRL 287
Query: 292 FRHPEIADPETIEL 305
F H E+ IEL
Sbjct: 288 FNHHEVLPDNEIEL 301
>gi|396081098|gb|AFN82717.1| flap endonuclease-1 [Encephalitozoon romaleae SJ-2008]
Length = 345
Score = 156 bits (395), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 75/139 (53%), Positives = 107/139 (76%), Gaps = 8/139 (5%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVLE 120
AP EAEA CA + K VY ATEDMD+LTFGS ++LR+ + + ++KLPV E++L ++LE
Sbjct: 154 APSEAEAYCALLCKKRAVYGVATEDMDSLTFGSPVVLRNFSGTRSKKLPVVEYNLRQLLE 213
Query: 121 GMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKIL--ENIDTKKYTVPE 178
+ L +EFIDLCILLGCDYCD+++GIGPK+A+ LIK+HRSIE+IL EN++T P+
Sbjct: 214 DLSLDQDEFIDLCILLGCDYCDTLKGIGPKKALGLIKKHRSIERILQEENLET-----PD 268
Query: 179 GWLYKEARELFRH-PEVAD 196
W Y++A+++FR+ E+ D
Sbjct: 269 EWRYEDAQKIFRNLAEIGD 287
Score = 108 bits (271), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 54/97 (55%), Positives = 68/97 (70%), Gaps = 1/97 (1%)
Query: 311 PSSIRESRKICIDASMSLYQFLIAVRSEGNQLMSVDGEPTSHLMGTFYRTIRLVEHGLKP 370
P + S+++ IDASMS+YQFLIAVRS+G+ L + D TSHL+G FYRTIR+VE G+ P
Sbjct: 22 PLAYYSSKRVAIDASMSIYQFLIAVRSDGSTLGNGD-TTTSHLVGLFYRTIRMVELGITP 80
Query: 371 IYVFDGKPPTLKSGELNKRMEKREDAQKALAKAQEQG 407
+YVFDG PP +K EL KR E+R A K A E G
Sbjct: 81 VYVFDGVPPEVKMKELGKRNERRATADKEYKDASEAG 117
Score = 87.4 bits (215), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 42/77 (54%), Positives = 60/77 (77%), Gaps = 8/77 (10%)
Query: 232 FIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKIL--ENIDTKKYTVPEGWLYKEAR 289
FIDLCILLGCDYCD+++GIGPK+A+ LIK+HRSIE+IL EN++T P+ W Y++A+
Sbjct: 222 FIDLCILLGCDYCDTLKGIGPKKALGLIKKHRSIERILQEENLET-----PDEWRYEDAQ 276
Query: 290 ELFRH-PEIADPETIEL 305
++FR+ EI D + +
Sbjct: 277 KIFRNLAEIGDAKEFNI 293
Score = 51.6 bits (122), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/70 (38%), Positives = 36/70 (51%), Gaps = 5/70 (7%)
Query: 394 EDAQKALAKAQEQGKLK-----WSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSTT 448
EDAQK E G K W D +G+VK+L +K F +R+ G KL+ + +
Sbjct: 273 EDAQKIFRNLAEIGDAKEFNISWKSIDRNGIVKFLVEEKGFDLERVNKGVDKLINSGRKS 332
Query: 449 TQGRLDSFFT 458
TQGRLD F
Sbjct: 333 TQGRLDGFIA 342
Score = 47.0 bits (110), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 29/52 (55%)
Query: 1 MTLKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSSTTQGRLDSFFT 52
+ W D +G+VK+L +K F +R+ G KL+ + +TQGRLD F
Sbjct: 291 FNISWKSIDRNGIVKFLVEEKGFDLERVNKGVDKLINSGRKSTQGRLDGFIA 342
>gi|170111659|ref|XP_001887033.1| predicted protein [Laccaria bicolor S238N-H82]
gi|317374862|sp|B0DSN9.1|FEN11_LACBS RecName: Full=Flap endonuclease 1-A; Short=FEN-1-A; AltName:
Full=Flap structure-specific endonuclease 1-A
gi|164638076|gb|EDR02356.1| predicted protein [Laccaria bicolor S238N-H82]
Length = 394
Score = 156 bits (394), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 68/146 (46%), Positives = 105/146 (71%), Gaps = 4/146 (2%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVLE 120
AP EAEAQCA + + GKVYA +EDMD LTF + IL RH+TFSEA+K P+ E +L++ LE
Sbjct: 156 APSEAEAQCAELARGGKVYAAGSEDMDTLTFNAPILFRHLTFSEAKKQPISEINLKEALE 215
Query: 121 GMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKIL----ENIDTKKYTV 176
G++++ +FIDLCILLGCDY + I+G+GPK A++LI+E+ ++ ++ EN + +
Sbjct: 216 GLDMNMSQFIDLCILLGCDYLEPIKGVGPKSALKLIREYGGLKGVVKHLRENSGCRGMQI 275
Query: 177 PEGWLYKEARELFRHPEVADPETIEF 202
P+ W ++EA+++F P+V + +E
Sbjct: 276 PDEWPWEEAKKIFEKPDVLPADEVEL 301
Score = 110 bits (276), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 54/94 (57%), Positives = 71/94 (75%), Gaps = 8/94 (8%)
Query: 305 LVADVAPSSIRE-------SRKICIDASMSLYQFLIAVRSEGNQLMSVD-GEPTSHLMGT 356
L++ AP +I+E RK+ IDASMS+YQFLIAVR + +L++ D GE TSHLMG
Sbjct: 9 LLSQHAPKAIQEHEIKTLFGRKVAIDASMSIYQFLIAVRQKDGELLTNDAGETTSHLMGL 68
Query: 357 FYRTIRLVEHGLKPIYVFDGKPPTLKSGELNKRM 390
FYRT+R+VE+G+KP Y+FDGKPP LK G L+KR+
Sbjct: 69 FYRTLRIVENGIKPAYIFDGKPPELKKGVLSKRL 102
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 31/81 (38%), Positives = 55/81 (67%), Gaps = 4/81 (4%)
Query: 229 LYSFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKIL----ENIDTKKYTVPEGWL 284
+ FIDLCILLGCDY + I+G+GPK A++LI+E+ ++ ++ EN + +P+ W
Sbjct: 221 MSQFIDLCILLGCDYLEPIKGVGPKSALKLIREYGGLKGVVKHLRENSGCRGMQIPDEWP 280
Query: 285 YKEARELFRHPEIADPETIEL 305
++EA+++F P++ + +EL
Sbjct: 281 WEEAKKIFEKPDVLPADEVEL 301
Score = 74.3 bits (181), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 38/80 (47%), Positives = 51/80 (63%), Gaps = 4/80 (5%)
Query: 3 LKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSSTTQGRLDSFFTIRREEKRKAP 62
L+W++PD DGLV++L +K F EDR+R GA+KL K +S QGRLD FF+++ +EK AP
Sbjct: 301 LEWTNPDVDGLVQFLVKEKGFNEDRVRKGAEKLQKFLNSKQQGRLDGFFSVKPKEKAAAP 360
Query: 63 CEAEAQCAAMVKAGKVYATA 82
A GKV A A
Sbjct: 361 ----APVGKAKGKGKVDAKA 376
Score = 68.6 bits (166), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 29/56 (51%), Positives = 43/56 (76%)
Query: 409 LKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSTTTQGRLDSFFTIRREEK 464
L+W++PD DGLV++L +K F EDR+R GA+KL K ++ QGRLD FF+++ +EK
Sbjct: 301 LEWTNPDVDGLVQFLVKEKGFNEDRVRKGAEKLQKFLNSKQQGRLDGFFSVKPKEK 356
>gi|395330939|gb|EJF63321.1| PIN domain-like protein [Dichomitus squalens LYAD-421 SS1]
Length = 429
Score = 155 bits (393), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 72/159 (45%), Positives = 103/159 (64%), Gaps = 17/159 (10%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVLE 120
AP EAEAQCA + + GKVYA +EDMD LTFG+ ILLRH+TFSEARK P+ E LEK LE
Sbjct: 174 APSEAEAQCAELARGGKVYAAGSEDMDTLTFGAPILLRHLTFSEARKTPISEISLEKALE 233
Query: 121 GMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTK-------- 172
G+E+ +F +LCILLGCDY + I+G+GPK A++L++EH ++ K++ ++ K
Sbjct: 234 GLEMDMSQFTELCILLGCDYLEPIKGVGPKGALKLLREHGTLGKVVAHLREKAAEKEDAG 293
Query: 173 ---------KYTVPEGWLYKEARELFRHPEVADPETIEF 202
+P+ W ++ A+ LF P+V + +E
Sbjct: 294 EDGGKKKKGGVQIPDEWPWEAAKALFSKPDVTPADELEL 332
Score = 124 bits (310), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 60/92 (65%), Positives = 75/92 (81%), Gaps = 1/92 (1%)
Query: 317 SRKICIDASMSLYQFLIAVRSEGNQLMSVD-GEPTSHLMGTFYRTIRLVEHGLKPIYVFD 375
RK+ IDASMS+YQFLIAVR + +L++ D GE TSHLMG FYRTIR+VE+G+KP YVFD
Sbjct: 46 GRKVAIDASMSIYQFLIAVRQKDGELLTNDAGETTSHLMGFFYRTIRMVENGIKPAYVFD 105
Query: 376 GKPPTLKSGELNKRMEKREDAQKALAKAQEQG 407
GKPP LKSG L+KR EKRE+A++ +A+E G
Sbjct: 106 GKPPELKSGVLSKRFEKREEAKEDGEEAKETG 137
Score = 65.9 bits (159), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 53/94 (56%), Gaps = 17/94 (18%)
Query: 229 LYSFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTK------------- 275
+ F +LCILLGCDY + I+G+GPK A++L++EH ++ K++ ++ K
Sbjct: 239 MSQFTELCILLGCDYLEPIKGVGPKGALKLLREHGTLGKVVAHLREKAAEKEDAGEDGGK 298
Query: 276 ----KYTVPEGWLYKEARELFRHPEIADPETIEL 305
+P+ W ++ A+ LF P++ + +EL
Sbjct: 299 KKKGGVQIPDEWPWEAAKALFSKPDVTPADELEL 332
Score = 58.9 bits (141), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 25/54 (46%), Positives = 36/54 (66%)
Query: 1 MTLKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSSTTQGRLDSFFTIR 54
+ L+W PD +GLV +L +K F E+R+R G +KL K ++ QGRLD FFT +
Sbjct: 330 LELEWKSPDIEGLVDFLVKEKGFNEERVRKGGEKLAKHLNAKQQGRLDGFFTAK 383
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/52 (48%), Positives = 34/52 (65%)
Query: 409 LKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSTTTQGRLDSFFTIR 460
L+W PD +GLV +L +K F E+R+R G +KL K + QGRLD FFT +
Sbjct: 332 LEWKSPDIEGLVDFLVKEKGFNEERVRKGGEKLAKHLNAKQQGRLDGFFTAK 383
>gi|402580560|gb|EJW74510.1| hypothetical protein WUBG_14580, partial [Wuchereria bancrofti]
Length = 266
Score = 155 bits (392), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 72/110 (65%), Positives = 90/110 (81%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVLE 120
APCEAEAQCAA+ KAGKV+AT +EDMDALTFGS ILLR M SEA+KLPV+E +L +VL+
Sbjct: 155 APCEAEAQCAALAKAGKVFATVSEDMDALTFGSPILLRQMIASEAKKLPVKEMNLNQVLK 214
Query: 121 GMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENID 170
++ +F+DLCILLGCDY +IRGIGPK+A ELIK++ IE +LE I+
Sbjct: 215 DFGMNMGQFVDLCILLGCDYVSTIRGIGPKKAFELIKKYECIENVLEAIN 264
Score = 125 bits (315), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 63/125 (50%), Positives = 86/125 (68%), Gaps = 7/125 (5%)
Query: 304 ELVADVAPSSIRE-------SRKICIDASMSLYQFLIAVRSEGNQLMSVDGEPTSHLMGT 356
+++ D +P+SIR RK+ +DASM LYQFLIAVR +G+QL + GE TSHL+G
Sbjct: 8 KVIGDHSPNSIRLKEFKGYFGRKVAVDASMCLYQFLIAVRQDGSQLQTESGETTSHLLGM 67
Query: 357 FYRTIRLVEHGLKPIYVFDGKPPTLKSGELNKRMEKREDAQKALAKAQEQGKLKWSDPDE 416
FYRTIR++++G+KP+YVFDGKPP +K+ EL KR E+R +A+K A E G + E
Sbjct: 68 FYRTIRMIDNGIKPVYVFDGKPPQMKASELEKRTERRTEAEKQRNDAVELGDEASVNKFE 127
Query: 417 DGLVK 421
LVK
Sbjct: 128 RRLVK 132
Score = 66.2 bits (160), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 28/42 (66%), Positives = 35/42 (83%)
Query: 232 FIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENID 273
F+DLCILLGCDY +IRGIGPK+A ELIK++ IE +LE I+
Sbjct: 223 FVDLCILLGCDYVSTIRGIGPKKAFELIKKYECIENVLEAIN 264
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 21/32 (65%), Positives = 27/32 (84%)
Query: 201 EFIDLCILLGCDYCDSIRGIGPKRAIELLYSF 232
+F+DLCILLGCDY +IRGIGPK+A EL+ +
Sbjct: 222 QFVDLCILLGCDYVSTIRGIGPKKAFELIKKY 253
>gi|401825763|ref|XP_003886976.1| flap endonuclease-1 [Encephalitozoon hellem ATCC 50504]
gi|392998133|gb|AFM97995.1| flap endonuclease-1 [Encephalitozoon hellem ATCC 50504]
Length = 345
Score = 155 bits (391), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 75/139 (53%), Positives = 106/139 (76%), Gaps = 8/139 (5%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVLE 120
AP EAEA CA + + VY ATEDMD+LTFGS ++LR+ + ++++KLPV E++L ++LE
Sbjct: 154 APSEAEAYCAFLCRKRIVYGVATEDMDSLTFGSPVVLRNFSGAQSKKLPVVEYNLRQLLE 213
Query: 121 GMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKIL--ENIDTKKYTVPE 178
+ L EFIDLCILLGCDYCD+++GIGPK+A+ LI++HRSIE+IL EN+D VP
Sbjct: 214 DLSLEQNEFIDLCILLGCDYCDTLKGIGPKKALGLIRKHRSIERILQEENLD-----VPG 268
Query: 179 GWLYKEARELFRH-PEVAD 196
GW Y+EA+++F + E+ D
Sbjct: 269 GWGYEEAQKIFMNLGEIGD 287
Score = 110 bits (276), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 56/97 (57%), Positives = 69/97 (71%), Gaps = 1/97 (1%)
Query: 311 PSSIRESRKICIDASMSLYQFLIAVRSEGNQLMSVDGEPTSHLMGTFYRTIRLVEHGLKP 370
P + S++I IDASMS+YQFLIAVRS+G+ L S D TSHL+G FYRTIR+VE G+ P
Sbjct: 22 PLAYYSSKRIAIDASMSIYQFLIAVRSDGSMLGSGDA-TTSHLVGLFYRTIRMVELGITP 80
Query: 371 IYVFDGKPPTLKSGELNKRMEKREDAQKALAKAQEQG 407
+YVFDG PP +K EL KR E+R A K +A E G
Sbjct: 81 VYVFDGAPPEIKMKELGKRNERRAMADKEYREASEAG 117
Score = 89.0 bits (219), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 47/89 (52%), Positives = 65/89 (73%), Gaps = 12/89 (13%)
Query: 232 FIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKIL--ENIDTKKYTVPEGWLYKEAR 289
FIDLCILLGCDYCD+++GIGPK+A+ LI++HRSIE+IL EN+D VP GW Y+EA+
Sbjct: 222 FIDLCILLGCDYCDTLKGIGPKKALGLIRKHRSIERILQEENLD-----VPGGWGYEEAQ 276
Query: 290 ELFRH-PEIADPETIELVADVAPSSIRES 317
++F + EI D +++ SSI +S
Sbjct: 277 KIFMNLGEIGDSREF----NISWSSIDKS 301
Score = 55.1 bits (131), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 27/70 (38%), Positives = 39/70 (55%), Gaps = 5/70 (7%)
Query: 394 EDAQKALAKAQEQG-----KLKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSTT 448
E+AQK E G + WS D+ G+VK+L +K F +R+ G +KL+ +R +
Sbjct: 273 EEAQKIFMNLGEIGDSREFNISWSSIDKSGIVKFLVEEKGFDLERVNKGVEKLINSRKKS 332
Query: 449 TQGRLDSFFT 458
QGRLD F T
Sbjct: 333 MQGRLDGFIT 342
Score = 52.4 bits (124), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 32/52 (61%)
Query: 1 MTLKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSSTTQGRLDSFFT 52
+ WS D+ G+VK+L +K F +R+ G +KL+ +R + QGRLD F T
Sbjct: 291 FNISWSSIDKSGIVKFLVEEKGFDLERVNKGVEKLINSRKKSMQGRLDGFIT 342
>gi|389582194|dbj|GAB64749.1| flap exonuclease [Plasmodium cynomolgi strain B]
Length = 624
Score = 155 bits (391), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 80/158 (50%), Positives = 103/158 (65%), Gaps = 13/158 (8%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTF------------SEARKL 108
APCEAE+QCA + K +ATATED DAL FG+ IL+R++ S R
Sbjct: 157 APCEAESQCAFLTKYNLAHATATEDADALVFGTKILIRNLNANASSANQNKNKNSSKRGY 216
Query: 109 PVQEFHLEKVLEGMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILEN 168
+ E +LE+VL+G+ LS EFID CIL GCDYCD+I+GIG K A LIKE+ SIEKI+EN
Sbjct: 217 ILTEINLEQVLKGLNLSMNEFIDFCILCGCDYCDTIKGIGSKTAYNLIKEYNSIEKIIEN 276
Query: 169 IDTKKYTVPEGWLYKEARELFRHPEVADPETIEFIDLC 206
ID KY VP + + EAR+ F +P+V E ++ ID C
Sbjct: 277 IDKNKYQVPSNFRFVEARDSFINPKVLSKEEVK-IDWC 313
Score = 119 bits (297), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 61/115 (53%), Positives = 79/115 (68%), Gaps = 11/115 (9%)
Query: 305 LVADVAPSSIRE-------SRKICIDASMSLYQFLIAVRSE---GNQLMSVDGEPTSHLM 354
+AD AP++I+E R + IDASMSLYQF+IA+R GN L + GE TSH+
Sbjct: 9 FIADAAPNAIKEIKIENLMGRVVAIDASMSLYQFIIAIRDSEQYGN-LTNESGETTSHIS 67
Query: 355 GTFYRTIRLVEHGLKPIYVFDGKPPTLKSGELNKRMEKREDAQKALAKAQEQGKL 409
G R+I+L+E+GLKPIYVFDG PP LK EL KR EKR+ A++ L KA+E+G L
Sbjct: 68 GLMSRSIKLMENGLKPIYVFDGAPPELKGSELEKRGEKRQKAEELLKKAKEEGNL 122
Score = 93.2 bits (230), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 41/77 (53%), Positives = 55/77 (71%)
Query: 229 LYSFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGWLYKEA 288
+ FID CIL GCDYCD+I+GIG K A LIKE+ SIEKI+ENID KY VP + + EA
Sbjct: 234 MNEFIDFCILCGCDYCDTIKGIGSKTAYNLIKEYNSIEKIIENIDKNKYQVPSNFRFVEA 293
Query: 289 RELFRHPEIADPETIEL 305
R+ F +P++ E +++
Sbjct: 294 RDSFINPKVLSKEEVKI 310
Score = 48.1 bits (113), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 24/52 (46%), Positives = 32/52 (61%)
Query: 1 MTLKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSSTTQGRLDSFFT 52
+ + W +P + L +L D NF E R+ N +LLKAR TTQ RLD+FFT
Sbjct: 308 VKIDWCEPKIEELKNFLIKDYNFNEVRVTNYINRLLKARKVTTQRRLDNFFT 359
>gi|357122637|ref|XP_003563021.1| PREDICTED: flap endonuclease 1-B-like [Brachypodium distachyon]
Length = 413
Score = 155 bits (391), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 72/135 (53%), Positives = 103/135 (76%), Gaps = 1/135 (0%)
Query: 60 KAPCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVL 119
+AP EAEAQCA++ K K YA A+EDMD+LTFGS LRH+T ++ PV EF + KVL
Sbjct: 155 EAPGEAEAQCASLCKNHKAYAVASEDMDSLTFGSLRFLRHITDLSFKRSPVTEFEVPKVL 214
Query: 120 EGMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEG 179
E + L+ ++FIDLCIL GCDYC++I+GIG +RA++LI++H IE++++N++ ++TVPE
Sbjct: 215 EELGLTMDQFIDLCILSGCDYCENIKGIGGQRALKLIRQHGCIEEVVQNLNN-RFTVPED 273
Query: 180 WLYKEARELFRHPEV 194
W Y+E R LF+ P V
Sbjct: 274 WPYQEVRTLFKEPNV 288
Score = 99.8 bits (247), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 55/127 (43%), Positives = 81/127 (63%), Gaps = 15/127 (11%)
Query: 304 ELVADVAPSSIRE-------SRKICIDASMSLYQFLIAVRSEGNQLMSVD-GEPTSHLMG 355
+L+A+ AP + + R I IDAS+S+YQFL+ V +G ++++ + GE TSHL G
Sbjct: 8 KLLAEHAPRAAAQRRVEDYRGRVIAIDASLSIYQFLVVVGRKGTEVLTNEAGEVTSHLQG 67
Query: 356 TFYRTIRLVEHGLKPIYVFDGKPPTLKSGELNKRMEKREDAQKALAKAQEQGKLKWSDPD 415
RT+RL+E G+KP++VFDG+PP LK EL KR +R+DA + L +A E G D
Sbjct: 68 MLNRTVRLLEAGIKPVFVFDGEPPDLKKRELAKRSLRRDDASEDLNRAIEVG-------D 120
Query: 416 EDGLVKY 422
ED + K+
Sbjct: 121 EDSIEKF 127
Score = 86.3 bits (212), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 35/66 (53%), Positives = 54/66 (81%), Gaps = 1/66 (1%)
Query: 232 FIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGWLYKEAREL 291
FIDLCIL GCDYC++I+GIG +RA++LI++H IE++++N++ ++TVPE W Y+E R L
Sbjct: 224 FIDLCILSGCDYCENIKGIGGQRALKLIRQHGCIEEVVQNLNN-RFTVPEDWPYQEVRTL 282
Query: 292 FRHPEI 297
F+ P +
Sbjct: 283 FKEPNV 288
>gi|430813459|emb|CCJ29208.1| unnamed protein product [Pneumocystis jirovecii]
Length = 278
Score = 154 bits (390), Expect = 9e-35, Method: Compositional matrix adjust.
Identities = 70/116 (60%), Positives = 92/116 (79%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVLE 120
APCEAEAQCAA+ KAGKVYA A+EDMD L F + ILLRH+TFSE +K P+ E +LEK L+
Sbjct: 156 APCEAEAQCAALAKAGKVYAAASEDMDILCFSTPILLRHLTFSEQKKEPITEVNLEKALK 215
Query: 121 GMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTV 176
+ + E+F+DLCILLGCDYC+ I+GIGPKRA+ELI+E++S++ + D KY +
Sbjct: 216 ELNMPLEQFVDLCILLGCDYCEPIKGIGPKRALELIREYKSLDAFINFADKSKYIL 271
Score = 120 bits (300), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 61/110 (55%), Positives = 80/110 (72%), Gaps = 8/110 (7%)
Query: 304 ELVADVAPSSIRE-------SRKICIDASMSLYQFLIAVRS-EGNQLMSVDGEPTSHLMG 355
+L+ + A SSI+ RK+ IDASMS+YQFL+AVR +G QLM+ GE TSHLMG
Sbjct: 8 QLLEEFASSSIKSYDIDHYFGRKVAIDASMSIYQFLVAVRQRDGQQLMNKTGETTSHLMG 67
Query: 356 TFYRTIRLVEHGLKPIYVFDGKPPTLKSGELNKRMEKREDAQKALAKAQE 405
FYRT+R+ ++G++P YVFDG PP LKSGEL KR E+RE A K+ +A+E
Sbjct: 68 IFYRTLRMCDNGIRPCYVFDGTPPKLKSGELAKRSERREKAAKSYLEAKE 117
Score = 70.1 bits (170), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 29/51 (56%), Positives = 40/51 (78%)
Query: 229 LYSFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTV 279
L F+DLCILLGCDYC+ I+GIGPKRA+ELI+E++S++ + D KY +
Sbjct: 221 LEQFVDLCILLGCDYCEPIKGIGPKRALELIREYKSLDAFINFADKSKYIL 271
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 23/35 (65%), Positives = 30/35 (85%)
Query: 201 EFIDLCILLGCDYCDSIRGIGPKRAIELLYSFIDL 235
+F+DLCILLGCDYC+ I+GIGPKRA+EL+ + L
Sbjct: 223 QFVDLCILLGCDYCEPIKGIGPKRALELIREYKSL 257
>gi|336365482|gb|EGN93832.1| hypothetical protein SERLA73DRAFT_188945 [Serpula lacrymans var.
lacrymans S7.3]
gi|336378041|gb|EGO19200.1| hypothetical protein SERLADRAFT_479560 [Serpula lacrymans var.
lacrymans S7.9]
Length = 407
Score = 154 bits (389), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 70/158 (44%), Positives = 103/158 (65%), Gaps = 16/158 (10%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVLE 120
AP EAEAQCA + + GKVYA +EDMD LTF + ILLRH+TFSEARK P+ E +L++ LE
Sbjct: 156 APSEAEAQCAELARGGKVYAAGSEDMDTLTFSAPILLRHLTFSEARKAPISEINLQRALE 215
Query: 121 GMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTK-------- 172
G+E+ F DLCILLGCDY + I+G+GPK A++L+++H + ++E++ K
Sbjct: 216 GLEMDMSLFTDLCILLGCDYLEPIKGVGPKSALKLVRDHGGLAGVVEHLRGKAAEKAEAG 275
Query: 173 --------KYTVPEGWLYKEARELFRHPEVADPETIEF 202
+PE W ++EA+++F P+V + +E
Sbjct: 276 EDGKKKKGGIHIPEEWPWEEAKKIFVKPDVTPADEVEL 313
Score = 117 bits (292), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 56/94 (59%), Positives = 73/94 (77%), Gaps = 8/94 (8%)
Query: 305 LVADVAPSSIRE-------SRKICIDASMSLYQFLIAVRSEGNQLMSVD-GEPTSHLMGT 356
L+A+ AP +I E SRK+ IDASMS+YQFLIAVR + ++++ D GE TSHLMG
Sbjct: 9 LIAEYAPKAITEHDIKTLFSRKVAIDASMSIYQFLIAVRQKDGEMLTNDAGETTSHLMGF 68
Query: 357 FYRTIRLVEHGLKPIYVFDGKPPTLKSGELNKRM 390
FYRTIR+VE+G+KP+YVFDGKPP +K+G L+KR
Sbjct: 69 FYRTIRIVENGIKPVYVFDGKPPEMKAGVLSKRF 102
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 40/134 (29%), Positives = 71/134 (52%), Gaps = 24/134 (17%)
Query: 196 DPETIEFIDLCILLGCDYCDS----IRGIGPKRAIELLYS----FIDLCILLGCDYCDSI 247
D +T+ F +L + ++ I I +RA+E L F DLCILLGCDY + I
Sbjct: 180 DMDTLTFSAPILLRHLTFSEARKAPISEINLQRALEGLEMDMSLFTDLCILLGCDYLEPI 239
Query: 248 RGIGPKRAIELIKEHRSIEKILENIDTK----------------KYTVPEGWLYKEAREL 291
+G+GPK A++L+++H + ++E++ K +PE W ++EA+++
Sbjct: 240 KGVGPKSALKLVRDHGGLAGVVEHLRGKAAEKAEAGEDGKKKKGGIHIPEEWPWEEAKKI 299
Query: 292 FRHPEIADPETIEL 305
F P++ + +EL
Sbjct: 300 FVKPDVTPADEVEL 313
Score = 63.2 bits (152), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 28/52 (53%), Positives = 37/52 (71%)
Query: 3 LKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSSTTQGRLDSFFTIR 54
L+W +PD DGLV++L +K F E+R+R GA KL K +S QGRLD FFT +
Sbjct: 313 LEWKNPDIDGLVQFLVTEKGFNEERVRKGADKLQKFLNSKQQGRLDGFFTAK 364
Score = 62.8 bits (151), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 31/71 (43%), Positives = 46/71 (64%), Gaps = 4/71 (5%)
Query: 394 EDAQKALAKAQ----EQGKLKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSTTT 449
E+A+K K ++ +L+W +PD DGLV++L +K F E+R+R GA KL K ++
Sbjct: 294 EEAKKIFVKPDVTPADEVELEWKNPDIDGLVQFLVTEKGFNEERVRKGADKLQKFLNSKQ 353
Query: 450 QGRLDSFFTIR 460
QGRLD FFT +
Sbjct: 354 QGRLDGFFTAK 364
>gi|392591810|gb|EIW81137.1| PIN domain-like protein [Coniophora puteana RWD-64-598 SS2]
Length = 437
Score = 154 bits (389), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 72/167 (43%), Positives = 106/167 (63%), Gaps = 25/167 (14%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVLE 120
AP EAEAQCA + + GKVYA +EDMD LTF + +LLRH+TFSEA+K P+ E HLE+ L+
Sbjct: 187 APSEAEAQCAELARGGKVYAAGSEDMDTLTFHAPVLLRHLTFSEAKKAPISEIHLERALQ 246
Query: 121 GMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENI----------- 169
G+E+ +FIDLCILLGCDY + I+G+GPK A++LI+E+ ++ ++E++
Sbjct: 247 GLEMDMSQFIDLCILLGCDYLEPIKGVGPKSALKLIREYGGLKGVVEHLREKQAEKAEAA 306
Query: 170 --------------DTKKYTVPEGWLYKEARELFRHPEVADPETIEF 202
+ VPE W ++EA++LF P+V + +E
Sbjct: 307 AAAAEEDGKDGKKKKSGGIQVPEEWPWEEAKKLFEKPDVLPADEVEL 353
Score = 109 bits (273), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 51/75 (68%), Positives = 62/75 (82%), Gaps = 1/75 (1%)
Query: 317 SRKICIDASMSLYQFLIAVRSEGNQLMSVD-GEPTSHLMGTFYRTIRLVEHGLKPIYVFD 375
RK+ IDASMS+YQFLIAVR + ++++ D GE TSHLMG FYRTIR+VE+G+KP YVFD
Sbjct: 59 GRKVAIDASMSIYQFLIAVRQKDGEMLTNDAGETTSHLMGFFYRTIRIVENGIKPAYVFD 118
Query: 376 GKPPTLKSGELNKRM 390
GKPP LKSG L+KR
Sbjct: 119 GKPPDLKSGVLSKRF 133
Score = 68.2 bits (165), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 28/60 (46%), Positives = 43/60 (71%)
Query: 3 LKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSSTTQGRLDSFFTIRREEKRKAP 62
L+W DPD DGLV++L +K F E+R+R GA+KL + ++ QGRLD FFT++ ++ +P
Sbjct: 353 LEWKDPDVDGLVRFLVTEKGFNEERVRKGAEKLQRFLNTKQQGRLDGFFTVKPKDSSSSP 412
Score = 68.2 bits (165), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 33/78 (42%), Positives = 51/78 (65%), Gaps = 4/78 (5%)
Query: 394 EDAQKALAKAQ----EQGKLKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSTTT 449
E+A+K K ++ +L+W DPD DGLV++L +K F E+R+R GA+KL + +T
Sbjct: 334 EEAKKLFEKPDVLPADEVELEWKDPDVDGLVRFLVTEKGFNEERVRKGAEKLQRFLNTKQ 393
Query: 450 QGRLDSFFTIRREEKRKS 467
QGRLD FFT++ ++ S
Sbjct: 394 QGRLDGFFTVKPKDSSSS 411
Score = 67.8 bits (164), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 33/102 (32%), Positives = 56/102 (54%), Gaps = 25/102 (24%)
Query: 229 LYSFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENI---------------- 272
+ FIDLCILLGCDY + I+G+GPK A++LI+E+ ++ ++E++
Sbjct: 252 MSQFIDLCILLGCDYLEPIKGVGPKSALKLIREYGGLKGVVEHLREKQAEKAEAAAAAAE 311
Query: 273 ---------DTKKYTVPEGWLYKEARELFRHPEIADPETIEL 305
+ VPE W ++EA++LF P++ + +EL
Sbjct: 312 EDGKDGKKKKSGGIQVPEEWPWEEAKKLFEKPDVLPADEVEL 353
>gi|225543341|ref|NP_001017611.2| probable flap endonuclease 1 homolog [Danio rerio]
gi|317374871|sp|B0UXL7.1|FEN1B_DANRE RecName: Full=Probable flap endonuclease 1 homolog; Short=FEN-1
homolog; AltName: Full=Flap structure-specific
endonuclease 1 homolog
Length = 350
Score = 154 bits (389), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 72/139 (51%), Positives = 99/139 (71%), Gaps = 3/139 (2%)
Query: 60 KAPCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVL 119
KAP EAEA CA + K G V A A+EDMD L FG +LLR + + R + E+ L K+L
Sbjct: 126 KAPGEAEALCAHLAKIGTVNAVASEDMDTLAFGGTVLLRQL--NAKRDSEITEYSLPKLL 183
Query: 120 EGMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEG 179
E ++L +EEF+DLCILLGCDYCD I G+GP RA++LIKEH +IE ++E+++ K + +P
Sbjct: 184 EALQLKYEEFVDLCILLGCDYCDKIGGLGPSRALKLIKEHHTIEGVMEHVNRKTHPIPLN 243
Query: 180 WLYKEAREL-FRHPEVADP 197
W YK+AR+L F P++ DP
Sbjct: 244 WQYKDARKLFFETPKIDDP 262
Score = 96.3 bits (238), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 43/78 (55%), Positives = 60/78 (76%), Gaps = 2/78 (2%)
Query: 225 AIELLYS-FIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGW 283
A++L Y F+DLCILLGCDYCD I G+GP RA++LIKEH +IE ++E+++ K + +P W
Sbjct: 185 ALQLKYEEFVDLCILLGCDYCDKIGGLGPSRALKLIKEHHTIEGVMEHVNRKTHPIPLNW 244
Query: 284 LYKEAREL-FRHPEIADP 300
YK+AR+L F P+I DP
Sbjct: 245 QYKDARKLFFETPKIDDP 262
Score = 52.8 bits (125), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 44/89 (49%), Gaps = 16/89 (17%)
Query: 310 APSSIRE-------SRKICIDASMSLYQFLIAVRSEGNQLMSVDGEPTSHLMGTFYRTIR 362
AP+S+R + I +D S+ + QF A+ S L G FYRT+
Sbjct: 14 APASMRSKEIGDYSGKIIALDTSIVVNQFRSALPGHLK---------LSPLAGLFYRTLA 64
Query: 363 LVEHGLKPIYVFDGKPPTLKSGELNKRME 391
+EH +KP++V DGKPP K L KR +
Sbjct: 65 FLEHDIKPVFVLDGKPPHQKRAVLEKRAQ 93
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 46/87 (52%), Gaps = 13/87 (14%)
Query: 409 LKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKK----LLKAR---------STTTQGRLDS 455
L WS+PDE+GLV++LC +K E+R+R KK LLK R T Q RL+
Sbjct: 264 LAWSEPDEEGLVQFLCKEKPLKEERVRGRMKKFREMLLKRRKQREVNMQMGQTRQSRLED 323
Query: 456 FFTIRREEKRKSRCQYQCQYQCQYQCQ 482
FF R+ + +S + + Q++ +
Sbjct: 324 FFPATRKRRAESAAVKESSGRKQFKIK 350
Score = 50.1 bits (118), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 32/77 (41%), Positives = 41/77 (53%), Gaps = 15/77 (19%)
Query: 2 TLKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKK----LLKAR---------SSTTQGRLD 48
L WS+PDE+GLV++LC +K E+R+R KK LLK R T Q RL+
Sbjct: 263 VLAWSEPDEEGLVQFLCKEKPLKEERVRGRMKKFREMLLKRRKQREVNMQMGQTRQSRLE 322
Query: 49 SFFTIRREEKRKAPCEA 65
FF R KR+A A
Sbjct: 323 DFFPATR--KRRAESAA 337
>gi|156094601|ref|XP_001613337.1| flap exonuclease [Plasmodium vivax Sal-1]
gi|317376189|sp|A5KAL1.1|FEN1_PLAVS RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|148802211|gb|EDL43610.1| flap exonuclease, putative [Plasmodium vivax]
Length = 623
Score = 154 bits (389), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 80/158 (50%), Positives = 103/158 (65%), Gaps = 13/158 (8%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTF------------SEARKL 108
APCEAE+QCA + K +ATATED DAL FG+ IL+R++ S R
Sbjct: 157 APCEAESQCAFLTKYNLAHATATEDADALVFGTKILIRNLNANASSANQNKNKNSSKRGY 216
Query: 109 PVQEFHLEKVLEGMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILEN 168
+ E +LE+VL+G+ LS EFID CIL GCDYCD+I+GIG K A LIKE+ SIEKI+EN
Sbjct: 217 ILTEINLEQVLKGLNLSMNEFIDFCILCGCDYCDTIKGIGSKTAYNLIKEYNSIEKIIEN 276
Query: 169 IDTKKYTVPEGWLYKEARELFRHPEVADPETIEFIDLC 206
ID KY VP + + EAR+ F +P+V E ++ ID C
Sbjct: 277 IDKNKYQVPSNFRFVEARDSFINPKVLPKEEVK-IDWC 313
Score = 118 bits (295), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 61/116 (52%), Positives = 80/116 (68%), Gaps = 11/116 (9%)
Query: 304 ELVADVAPSSIRE-------SRKICIDASMSLYQFLIAVRSE---GNQLMSVDGEPTSHL 353
+ +AD AP++I+E R + IDASMSLYQF+IA+R GN L + GE TSH+
Sbjct: 8 KFIADAAPNAIKEIKIENLMGRVVAIDASMSLYQFIIAIRDSEQYGN-LTNESGETTSHI 66
Query: 354 MGTFYRTIRLVEHGLKPIYVFDGKPPTLKSGELNKRMEKREDAQKALAKAQEQGKL 409
G R+I+L+E+GLKPIYVFDG PP LK EL KR EKR+ A++ L KA+E+G L
Sbjct: 67 SGLMSRSIKLMENGLKPIYVFDGAPPELKGSELEKRGEKRQKAEELLKKAKEEGNL 122
Score = 92.8 bits (229), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 41/77 (53%), Positives = 55/77 (71%)
Query: 229 LYSFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGWLYKEA 288
+ FID CIL GCDYCD+I+GIG K A LIKE+ SIEKI+ENID KY VP + + EA
Sbjct: 234 MNEFIDFCILCGCDYCDTIKGIGSKTAYNLIKEYNSIEKIIENIDKNKYQVPSNFRFVEA 293
Query: 289 RELFRHPEIADPETIEL 305
R+ F +P++ E +++
Sbjct: 294 RDSFINPKVLPKEEVKI 310
Score = 51.6 bits (122), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/55 (47%), Positives = 35/55 (63%)
Query: 404 QEQGKLKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSTTTQGRLDSFFT 458
+E+ K+ W +P + L +L D NF E R+ N +LLKAR TTQ RLD+FFT
Sbjct: 305 KEEVKIDWCEPKIEELKNFLIKDYNFNEVRVTNYINRLLKARKVTTQRRLDNFFT 359
Score = 48.1 bits (113), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 24/52 (46%), Positives = 32/52 (61%)
Query: 1 MTLKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSSTTQGRLDSFFT 52
+ + W +P + L +L D NF E R+ N +LLKAR TTQ RLD+FFT
Sbjct: 308 VKIDWCEPKIEELKNFLIKDYNFNEVRVTNYINRLLKARKVTTQRRLDNFFT 359
>gi|221485037|gb|EEE23327.1| flap endonuclease-1, putative [Toxoplasma gondii GT1]
Length = 552
Score = 153 bits (386), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 77/149 (51%), Positives = 102/149 (68%), Gaps = 10/149 (6%)
Query: 60 KAPCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSE--------ARKLPVQ 111
+APCEAEAQCA + K KV+ATATED DALTFG+ L+R++TF E A +
Sbjct: 156 EAPCEAEAQCAELTKNRKVWATATEDADALTFGATRLIRNLTFGERSSGSGASATASGIL 215
Query: 112 EFHLEKVLEGMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDT 171
L +LE ++ S E+FID CIL GCDYC +++G+G K A L+KEH SIEKILE +D
Sbjct: 216 VIDLPTLLEELQFSQEQFIDFCILCGCDYCGTLKGVGAKTAYSLVKEHGSIEKILEVVDP 275
Query: 172 KKYTVPEGWLYKEARELFRHPEVADPETI 200
+K VP+G+ ++EARE FRHPEV + +
Sbjct: 276 EK--VPDGFCFQEAREFFRHPEVTPADRV 302
Score = 113 bits (282), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 59/116 (50%), Positives = 77/116 (66%), Gaps = 11/116 (9%)
Query: 305 LVADVAPSSIRE-------SRKICIDASMSLYQFLIAVRSEGNQLMSVD---GEPTSHLM 354
V D AP +I+ R I IDASMSLYQF++A+R +GN + G+ TSH+
Sbjct: 9 FVGDFAPRAIKRQEPGSFTGRVIAIDASMSLYQFMVAIR-DGNSFGNFTNDAGDCTSHIA 67
Query: 355 GTFYRTIRLVEHGLKPIYVFDGKPPTLKSGELNKRMEKREDAQKALAKAQEQGKLK 410
G R IRL+E G++P+YVFDGKPP LKSGEL KR E RE AQ+A KA+E+G ++
Sbjct: 68 GMLNRAIRLLEQGVRPVYVFDGKPPELKSGELAKRRELRESAQEAAEKAREEGNVE 123
Score = 92.8 bits (229), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 43/83 (51%), Positives = 59/83 (71%), Gaps = 5/83 (6%)
Query: 227 ELLYS---FIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGW 283
EL +S FID CIL GCDYC +++G+G K A L+KEH SIEKILE +D +K VP+G+
Sbjct: 225 ELQFSQEQFIDFCILCGCDYCGTLKGVGAKTAYSLVKEHGSIEKILEVVDPEK--VPDGF 282
Query: 284 LYKEARELFRHPEIADPETIELV 306
++EARE FRHPE+ + + +
Sbjct: 283 CFQEAREFFRHPEVTPADRVHVA 305
Score = 45.1 bits (105), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 21/49 (42%), Positives = 28/49 (57%)
Query: 3 LKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSSTTQGRLDSFF 51
+ W + D DGL +L + F E R+ N +L KAR T Q RL+SFF
Sbjct: 304 VAWGEVDVDGLKAFLVQENQFNEQRVENYITRLKKARGKTAQTRLESFF 352
Score = 44.7 bits (104), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 21/49 (42%), Positives = 28/49 (57%)
Query: 409 LKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSTTTQGRLDSFF 457
+ W + D DGL +L + F E R+ N +L KAR T Q RL+SFF
Sbjct: 304 VAWGEVDVDGLKAFLVQENQFNEQRVENYITRLKKARGKTAQTRLESFF 352
>gi|237836211|ref|XP_002367403.1| flap endonuclease-1, putative [Toxoplasma gondii ME49]
gi|211965067|gb|EEB00263.1| flap endonuclease-1, putative [Toxoplasma gondii ME49]
gi|221505908|gb|EEE31543.1| flap endonuclease-1, putative [Toxoplasma gondii VEG]
Length = 552
Score = 153 bits (386), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 77/149 (51%), Positives = 102/149 (68%), Gaps = 10/149 (6%)
Query: 60 KAPCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSE--------ARKLPVQ 111
+APCEAEAQCA + K KV+ATATED DALTFG+ L+R++TF E A +
Sbjct: 156 EAPCEAEAQCAELTKNRKVWATATEDADALTFGATRLIRNLTFGERASGSGASATASGIL 215
Query: 112 EFHLEKVLEGMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDT 171
L +LE ++ S E+FID CIL GCDYC +++G+G K A L+KEH SIEKILE +D
Sbjct: 216 VIDLPTLLEELQFSQEQFIDFCILCGCDYCGTLKGVGAKTAYSLVKEHGSIEKILEVVDP 275
Query: 172 KKYTVPEGWLYKEARELFRHPEVADPETI 200
+K VP+G+ ++EARE FRHPEV + +
Sbjct: 276 EK--VPDGFCFQEAREFFRHPEVTPADRV 302
Score = 113 bits (282), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 59/116 (50%), Positives = 77/116 (66%), Gaps = 11/116 (9%)
Query: 305 LVADVAPSSIRE-------SRKICIDASMSLYQFLIAVRSEGNQLMSVD---GEPTSHLM 354
V D AP +I+ R I IDASMSLYQF++A+R +GN + G+ TSH+
Sbjct: 9 FVGDFAPRAIKRQEPGSFTGRVIAIDASMSLYQFMVAIR-DGNSFGNFTNDAGDCTSHIA 67
Query: 355 GTFYRTIRLVEHGLKPIYVFDGKPPTLKSGELNKRMEKREDAQKALAKAQEQGKLK 410
G R IRL+E G++P+YVFDGKPP LKSGEL KR E RE AQ+A KA+E+G ++
Sbjct: 68 GMLNRAIRLLEQGVRPVYVFDGKPPELKSGELAKRRELRESAQEAAEKAREEGNVE 123
Score = 92.8 bits (229), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 43/83 (51%), Positives = 59/83 (71%), Gaps = 5/83 (6%)
Query: 227 ELLYS---FIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGW 283
EL +S FID CIL GCDYC +++G+G K A L+KEH SIEKILE +D +K VP+G+
Sbjct: 225 ELQFSQEQFIDFCILCGCDYCGTLKGVGAKTAYSLVKEHGSIEKILEVVDPEK--VPDGF 282
Query: 284 LYKEARELFRHPEIADPETIELV 306
++EARE FRHPE+ + + +
Sbjct: 283 CFQEAREFFRHPEVTPADRVHVA 305
Score = 45.1 bits (105), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 21/49 (42%), Positives = 28/49 (57%)
Query: 3 LKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSSTTQGRLDSFF 51
+ W + D DGL +L + F E R+ N +L KAR T Q RL+SFF
Sbjct: 304 VAWGEVDVDGLKAFLVQENQFNEQRVENYITRLKKARGKTAQTRLESFF 352
Score = 45.1 bits (105), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 21/49 (42%), Positives = 28/49 (57%)
Query: 409 LKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSTTTQGRLDSFF 457
+ W + D DGL +L + F E R+ N +L KAR T Q RL+SFF
Sbjct: 304 VAWGEVDVDGLKAFLVQENQFNEQRVENYITRLKKARGKTAQTRLESFF 352
>gi|62203342|gb|AAH92837.1| Zgc:110269 [Danio rerio]
gi|182888906|gb|AAI64364.1| Zgc:110269 protein [Danio rerio]
Length = 333
Score = 152 bits (385), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 71/139 (51%), Positives = 99/139 (71%), Gaps = 3/139 (2%)
Query: 60 KAPCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVL 119
KAP EAEA CA + K G V A A+EDMD L FG +LLR + + R + E+ L K+L
Sbjct: 109 KAPGEAEALCAHLAKIGTVNAVASEDMDTLAFGGTVLLRQL--NAKRDSEITEYSLPKLL 166
Query: 120 EGMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEG 179
E ++L +EEF+DLCILLGCDYCD I G+GP RA++LIKEH +IE ++E+++ K + +P
Sbjct: 167 EALQLKYEEFVDLCILLGCDYCDKIGGLGPSRALKLIKEHHTIEGVMEHVNRKTHPIPLN 226
Query: 180 WLYKEAREL-FRHPEVADP 197
W Y++AR+L F P++ DP
Sbjct: 227 WQYEDARKLFFETPKIDDP 245
Score = 94.7 bits (234), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 42/78 (53%), Positives = 60/78 (76%), Gaps = 2/78 (2%)
Query: 225 AIELLYS-FIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGW 283
A++L Y F+DLCILLGCDYCD I G+GP RA++LIKEH +IE ++E+++ K + +P W
Sbjct: 168 ALQLKYEEFVDLCILLGCDYCDKIGGLGPSRALKLIKEHHTIEGVMEHVNRKTHPIPLNW 227
Query: 284 LYKEAREL-FRHPEIADP 300
Y++AR+L F P+I DP
Sbjct: 228 QYEDARKLFFETPKIDDP 245
Score = 51.6 bits (122), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 37/72 (51%), Gaps = 9/72 (12%)
Query: 320 ICIDASMSLYQFLIAVRSEGNQLMSVDGEPTSHLMGTFYRTIRLVEHGLKPIYVFDGKPP 379
I +D S+ + QF A+ S L G FYRT+ +EH +KP++V DGKPP
Sbjct: 14 IALDTSIVVNQFRSALPGHLK---------LSPLAGLFYRTLAFLEHDIKPVFVLDGKPP 64
Query: 380 TLKSGELNKRME 391
K L KR +
Sbjct: 65 NQKRAVLEKRAQ 76
Score = 50.4 bits (119), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 33/77 (42%), Positives = 40/77 (51%), Gaps = 15/77 (19%)
Query: 2 TLKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKK----LLKAR---------SSTTQGRLD 48
L WS PDE+GLV++LC +K E+R+R KK LLK R T Q RL+
Sbjct: 246 VLAWSGPDEEGLVQFLCKEKPLKEERVRGRMKKFRETLLKRRKQREVNVQMGQTRQSRLE 305
Query: 49 SFFTIRREEKRKAPCEA 65
FF R KRKA A
Sbjct: 306 DFFPATR--KRKAESAA 320
Score = 50.1 bits (118), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 30/72 (41%), Positives = 39/72 (54%), Gaps = 13/72 (18%)
Query: 409 LKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKK----LLKAR---------STTTQGRLDS 455
L WS PDE+GLV++LC +K E+R+R KK LLK R T Q RL+
Sbjct: 247 LAWSGPDEEGLVQFLCKEKPLKEERVRGRMKKFRETLLKRRKQREVNVQMGQTRQSRLED 306
Query: 456 FFTIRREEKRKS 467
FF R+ K +S
Sbjct: 307 FFPATRKRKAES 318
>gi|315047298|ref|XP_003173024.1| hypothetical protein MGYG_09092 [Arthroderma gypseum CBS 118893]
gi|311343410|gb|EFR02613.1| hypothetical protein MGYG_09092 [Arthroderma gypseum CBS 118893]
Length = 459
Score = 152 bits (385), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 73/141 (51%), Positives = 99/141 (70%), Gaps = 11/141 (7%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVLE 120
AP EAEAQCA + KAGKV+ A+EDMD L F + +LLRH+TFSE RK P+ E HLEKVLE
Sbjct: 219 APTEAEAQCAVLAKAGKVFGAASEDMDTLCFAAPVLLRHLTFSEQRKEPILEIHLEKVLE 278
Query: 121 GMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENI-------DTKK 173
G+ + +F+DLCILLGCDY D I +GP A++LI++H ++EK++E + + +
Sbjct: 279 GLGMDMTQFVDLCILLGCDYLDPIPKVGPNTALKLIRDHGTLEKVVEAMRATPRRNTSSR 338
Query: 174 YTVPEGWLYKEARELFRHPEV 194
T P Y +ARELF +P+V
Sbjct: 339 TTGP----YLQARELFFNPDV 355
Score = 112 bits (279), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 53/94 (56%), Positives = 71/94 (75%), Gaps = 8/94 (8%)
Query: 304 ELVADVAPSSIRES-------RKICI-DASMSLYQFLIAVRSEGNQLMSVDGEPTSHLMG 355
+++++ AP +++ RK+ I DASMS+Y FLIAVRS+G QL + GE TSHLMG
Sbjct: 71 QIISENAPDAVKTGEIKNQFGRKVAIQDASMSIYSFLIAVRSDGQQLTNETGETTSHLMG 130
Query: 356 TFYRTIRLVEHGLKPIYVFDGKPPTLKSGELNKR 389
FYRT+R+V++G+KP+YVFDG PP LKSGEL KR
Sbjct: 131 MFYRTLRMVDNGIKPLYVFDGAPPKLKSGELAKR 164
Score = 66.2 bits (160), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 31/76 (40%), Positives = 49/76 (64%), Gaps = 11/76 (14%)
Query: 229 LYSFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENI-------DTKKYTVPE 281
+ F+DLCILLGCDY D I +GP A++LI++H ++EK++E + + + T P
Sbjct: 284 MTQFVDLCILLGCDYLDPIPKVGPNTALKLIRDHGTLEKVVEAMRATPRRNTSSRTTGP- 342
Query: 282 GWLYKEARELFRHPEI 297
Y +ARELF +P++
Sbjct: 343 ---YLQARELFFNPDV 355
Score = 61.6 bits (148), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/60 (46%), Positives = 41/60 (68%), Gaps = 1/60 (1%)
Query: 3 LKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSSTTQGRLDSFF-TIRREEKRKA 61
KW+ PD DGLV++L +K F+E+R+RNGA +L K S Q RL+ FF + + E++KA
Sbjct: 365 FKWTAPDVDGLVRFLVEEKGFSEERVRNGAARLTKNLKSAQQSRLEGFFKPVAKTEEQKA 424
Score = 59.7 bits (143), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 27/61 (44%), Positives = 40/61 (65%), Gaps = 2/61 (3%)
Query: 409 LKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSTTTQGRLDSFF--TIRREEKRK 466
KW+ PD DGLV++L +K F+E+R+RNGA +L K + Q RL+ FF + EE++
Sbjct: 365 FKWTAPDVDGLVRFLVEEKGFSEERVRNGAARLTKNLKSAQQSRLEGFFKPVAKTEEQKA 424
Query: 467 S 467
S
Sbjct: 425 S 425
>gi|221052642|ref|XP_002261044.1| flap exonuclease [Plasmodium knowlesi strain H]
gi|317376188|sp|B3L014.1|FEN1_PLAKH RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|194247048|emb|CAQ38232.1| flap exonuclease, putative [Plasmodium knowlesi strain H]
Length = 595
Score = 152 bits (385), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 76/154 (49%), Positives = 100/154 (64%), Gaps = 12/154 (7%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTF------------SEARKL 108
APCEAE+QCA + K +ATATED DAL FG+ IL+R++ S R
Sbjct: 157 APCEAESQCAFLTKYNLAHATATEDADALVFGTKILIRNLNANASSTSQNKNKNSSKRGY 216
Query: 109 PVQEFHLEKVLEGMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILEN 168
+ E +LE+VL+G+ L+ EFID CIL GCDYCD+I+GIG K A LIKE+ SIEKI+EN
Sbjct: 217 ILTEINLEQVLKGLNLNMNEFIDFCILCGCDYCDTIKGIGSKTAYNLIKEYNSIEKIIEN 276
Query: 169 IDTKKYTVPEGWLYKEARELFRHPEVADPETIEF 202
ID KY +P + + EAR+ F +P+V E I+
Sbjct: 277 IDKNKYQIPSNFRFVEARDSFINPKVLSKEEIKI 310
Score = 119 bits (297), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 61/116 (52%), Positives = 80/116 (68%), Gaps = 11/116 (9%)
Query: 304 ELVADVAPSSIRE-------SRKICIDASMSLYQFLIAVRSE---GNQLMSVDGEPTSHL 353
+ +AD AP++I+E R + IDASMSLYQF+IA+R GN L + GE TSH+
Sbjct: 8 KFIADAAPNAIKEIKIENLMGRVVAIDASMSLYQFIIAIRDSEQYGN-LTNESGETTSHI 66
Query: 354 MGTFYRTIRLVEHGLKPIYVFDGKPPTLKSGELNKRMEKREDAQKALAKAQEQGKL 409
G R+I+L+E+GLKPIYVFDG PP LK EL KR EKR+ A++ L KA+E+G L
Sbjct: 67 SGLMSRSIKLMENGLKPIYVFDGAPPELKGSELEKRGEKRQKAEELLKKAKEEGNL 122
Score = 93.6 bits (231), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 41/77 (53%), Positives = 55/77 (71%)
Query: 229 LYSFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGWLYKEA 288
+ FID CIL GCDYCD+I+GIG K A LIKE+ SIEKI+ENID KY +P + + EA
Sbjct: 234 MNEFIDFCILCGCDYCDTIKGIGSKTAYNLIKEYNSIEKIIENIDKNKYQIPSNFRFVEA 293
Query: 289 RELFRHPEIADPETIEL 305
R+ F +P++ E I++
Sbjct: 294 RDSFINPKVLSKEEIKI 310
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/56 (46%), Positives = 36/56 (64%)
Query: 403 AQEQGKLKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSTTTQGRLDSFFT 458
++E+ K+ W +P + L +L D NF E R+ N +LLKAR TTQ RLD+FFT
Sbjct: 304 SKEEIKIDWGEPKIEELKNFLIKDYNFNEVRVTNYINRLLKARKVTTQRRLDNFFT 359
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/52 (46%), Positives = 32/52 (61%)
Query: 1 MTLKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSSTTQGRLDSFFT 52
+ + W +P + L +L D NF E R+ N +LLKAR TTQ RLD+FFT
Sbjct: 308 IKIDWGEPKIEELKNFLIKDYNFNEVRVTNYINRLLKARKVTTQRRLDNFFT 359
>gi|393232393|gb|EJD39975.1| PIN domain-like protein [Auricularia delicata TFB-10046 SS5]
Length = 400
Score = 152 bits (384), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 70/158 (44%), Positives = 107/158 (67%), Gaps = 16/158 (10%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVLE 120
AP EAEAQCA + + GKVYA +EDMD LTFG+ IL RH+TFSEA+K P+ E L+K L+
Sbjct: 156 APSEAEAQCAELARGGKVYAAGSEDMDTLTFGAPILYRHLTFSEAKKQPISEIDLQKALD 215
Query: 121 GMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKK------- 173
G+ ++ ++FI+LC+LLGCDY + I+G+GPK A++ ++E S++KI++++ K+
Sbjct: 216 GLNMTMDQFIELCLLLGCDYLEPIKGVGPKSALKYMREMGSLDKIVDHLREKQADRDEAV 275
Query: 174 ---------YTVPEGWLYKEARELFRHPEVADPETIEF 202
VPE W ++EA++LF P+V + +E
Sbjct: 276 DAGKAKKGGVQVPEHWPWEEAKKLFIKPDVTPADEVEL 313
Score = 114 bits (284), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 57/95 (60%), Positives = 71/95 (74%), Gaps = 8/95 (8%)
Query: 304 ELVADVAPSSIRE-------SRKICIDASMSLYQFLIAVRSEGNQLMSVD-GEPTSHLMG 355
+LV + AP++ +E RK+ IDASMS+YQFLIAVR QL++ + GE TSHLMG
Sbjct: 8 QLVREHAPNAFKEHEIKTLFGRKVAIDASMSIYQFLIAVRQNDGQLLTNEAGETTSHLMG 67
Query: 356 TFYRTIRLVEHGLKPIYVFDGKPPTLKSGELNKRM 390
FYRTIR+VE+G+KP YVFDGKPP LKSG L+KR
Sbjct: 68 FFYRTIRIVENGIKPAYVFDGKPPELKSGVLSKRF 102
Score = 68.9 bits (167), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 32/90 (35%), Positives = 56/90 (62%), Gaps = 16/90 (17%)
Query: 232 FIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKK--------------- 276
FI+LC+LLGCDY + I+G+GPK A++ ++E S++KI++++ K+
Sbjct: 224 FIELCLLLGCDYLEPIKGVGPKSALKYMREMGSLDKIVDHLREKQADRDEAVDAGKAKKG 283
Query: 277 -YTVPEGWLYKEARELFRHPEIADPETIEL 305
VPE W ++EA++LF P++ + +EL
Sbjct: 284 GVQVPEHWPWEEAKKLFIKPDVTPADEVEL 313
Score = 63.5 bits (153), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 27/51 (52%), Positives = 36/51 (70%)
Query: 3 LKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSSTTQGRLDSFFTI 53
L+W +PD DGLV +L +K F EDR+R GA+KL K ++ QGRLD FF +
Sbjct: 313 LEWKNPDVDGLVDFLVKEKGFNEDRVRKGAEKLTKFLAAKQQGRLDGFFKV 363
Score = 63.2 bits (152), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 27/51 (52%), Positives = 35/51 (68%)
Query: 409 LKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSTTTQGRLDSFFTI 459
L+W +PD DGLV +L +K F EDR+R GA+KL K + QGRLD FF +
Sbjct: 313 LEWKNPDVDGLVDFLVKEKGFNEDRVRKGAEKLTKFLAAKQQGRLDGFFKV 363
>gi|449329677|gb|AGE95947.1| structure-specific endonuclease of the XPG/RAD2 family
[Encephalitozoon cuniculi]
Length = 345
Score = 152 bits (384), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 71/129 (55%), Positives = 96/129 (74%), Gaps = 3/129 (2%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVLE 120
AP EAEA CA + K VY ATEDMDALTFGS ++LR+ +++++LPV E +L ++LE
Sbjct: 154 APSEAEAYCALLCKKKAVYGVATEDMDALTFGSPVVLRNFNGTQSKRLPVMEHNLPQILE 213
Query: 121 GMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGW 180
+ L H EFIDLCILLGCDYC +++GIGPK+A+ LIK+HRSI IL+N D + VP W
Sbjct: 214 DLSLDHSEFIDLCILLGCDYCSTLKGIGPKKALGLIKKHRSIGNILKNEDLE---VPGDW 270
Query: 181 LYKEARELF 189
Y +A+++F
Sbjct: 271 RYSDAQKIF 279
Score = 108 bits (269), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 54/91 (59%), Positives = 66/91 (72%), Gaps = 1/91 (1%)
Query: 317 SRKICIDASMSLYQFLIAVRSEGNQLMSVDGEPTSHLMGTFYRTIRLVEHGLKPIYVFDG 376
S+K+ IDASMS+YQFLIAVRS G L + D PTSHL+G FYRTIR+VE G+ P+YVFDG
Sbjct: 28 SKKVAIDASMSMYQFLIAVRSGGATLGNED-SPTSHLVGFFYRTIRMVELGITPVYVFDG 86
Query: 377 KPPTLKSGELNKRMEKREDAQKALAKAQEQG 407
PP +K EL KR E+R A + +A E G
Sbjct: 87 VPPEIKMKELEKRKERRAAADREYREASEVG 117
Score = 80.1 bits (196), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 39/69 (56%), Positives = 51/69 (73%), Gaps = 4/69 (5%)
Query: 232 FIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGWLYKEAREL 291
FIDLCILLGCDYC +++GIGPK+A+ LIK+HRSI IL+N D + VP W Y +A+++
Sbjct: 222 FIDLCILLGCDYCSTLKGIGPKKALGLIKKHRSIGNILKNEDLE---VPGDWRYSDAQKI 278
Query: 292 FRH-PEIAD 299
F EI D
Sbjct: 279 FGSLAEIGD 287
Score = 52.0 bits (123), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 36/69 (52%), Gaps = 5/69 (7%)
Query: 395 DAQKALAKAQEQGKLK-----WSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSTTT 449
DAQK E G ++ W D +G+V +L +K F +R+ G KL+ +R T
Sbjct: 274 DAQKIFGSLAEIGDIRDFNISWDSIDRNGIVNFLVEEKGFDLERVNKGIDKLINSRKKGT 333
Query: 450 QGRLDSFFT 458
QGRLD F T
Sbjct: 334 QGRLDCFMT 342
Score = 47.8 bits (112), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 29/52 (55%)
Query: 1 MTLKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSSTTQGRLDSFFT 52
+ W D +G+V +L +K F +R+ G KL+ +R TQGRLD F T
Sbjct: 291 FNISWDSIDRNGIVNFLVEEKGFDLERVNKGIDKLINSRKKGTQGRLDCFMT 342
>gi|19173066|ref|NP_597617.1| STRUCTURE-SPECIFIC ENDONUCLEASE OF THE XPG/RAD2 FAMILY
[Encephalitozoon cuniculi GB-M1]
gi|74621278|sp|Q8SS91.1|FEN1_ENCCU RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|19168733|emb|CAD26252.1| STRUCTURE-SPECIFIC ENDONUCLEASE OF THE XPG/RAD2 FAMILY
[Encephalitozoon cuniculi GB-M1]
Length = 345
Score = 152 bits (383), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 71/129 (55%), Positives = 96/129 (74%), Gaps = 3/129 (2%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVLE 120
AP EAEA CA + K VY ATEDMDALTFGS ++LR+ +++++LPV E +L ++LE
Sbjct: 154 APSEAEAYCALLCKKKAVYGVATEDMDALTFGSPVVLRNFNGTQSKRLPVMEHNLPQILE 213
Query: 121 GMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGW 180
+ L H EFIDLCILLGCDYC +++GIGPK+A+ LIK+HRSI IL+N D + VP W
Sbjct: 214 DLSLDHSEFIDLCILLGCDYCSTLKGIGPKKALGLIKKHRSIGNILKNEDLE---VPGDW 270
Query: 181 LYKEARELF 189
Y +A+++F
Sbjct: 271 RYSDAQKIF 279
Score = 108 bits (269), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 54/91 (59%), Positives = 66/91 (72%), Gaps = 1/91 (1%)
Query: 317 SRKICIDASMSLYQFLIAVRSEGNQLMSVDGEPTSHLMGTFYRTIRLVEHGLKPIYVFDG 376
S+K+ IDASMS+YQFLIAVRS G L + D PTSHL+G FYRTIR+VE G+ P+YVFDG
Sbjct: 28 SKKVAIDASMSMYQFLIAVRSGGATLGNED-SPTSHLVGFFYRTIRMVELGITPVYVFDG 86
Query: 377 KPPTLKSGELNKRMEKREDAQKALAKAQEQG 407
PP +K EL KR E+R A + +A E G
Sbjct: 87 VPPEIKMKELEKRKERRAAADREYREASEVG 117
Score = 79.7 bits (195), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 36/61 (59%), Positives = 48/61 (78%), Gaps = 3/61 (4%)
Query: 232 FIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGWLYKEAREL 291
FIDLCILLGCDYC +++GIGPK+A+ LIK+HRSI IL+N D + VP W Y +A+++
Sbjct: 222 FIDLCILLGCDYCSTLKGIGPKKALGLIKKHRSIGNILKNEDLE---VPGDWRYSDAQKI 278
Query: 292 F 292
F
Sbjct: 279 F 279
Score = 52.4 bits (124), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 37/69 (53%), Gaps = 5/69 (7%)
Query: 395 DAQKALAKAQEQGKLK-----WSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSTTT 449
DAQK E G+++ W D +G+V +L +K F +R+ G KL+ +R T
Sbjct: 274 DAQKIFGSLAEIGEIRDFNISWDSIDRNGIVNFLVEEKGFDLERVNKGIDKLINSRKKGT 333
Query: 450 QGRLDSFFT 458
QGRLD F T
Sbjct: 334 QGRLDCFIT 342
Score = 47.8 bits (112), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 29/52 (55%)
Query: 1 MTLKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSSTTQGRLDSFFT 52
+ W D +G+V +L +K F +R+ G KL+ +R TQGRLD F T
Sbjct: 291 FNISWDSIDRNGIVNFLVEEKGFDLERVNKGIDKLINSRKKGTQGRLDCFIT 342
>gi|393213357|gb|EJC98853.1| PIN domain-like protein [Fomitiporia mediterranea MF3/22]
Length = 403
Score = 152 bits (383), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 69/158 (43%), Positives = 104/158 (65%), Gaps = 16/158 (10%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVLE 120
AP EAEAQCA + + GKVYA +EDMD LTF + IL RH+TFSEA+K P+ E +L+K LE
Sbjct: 156 APSEAEAQCAELARGGKVYAAGSEDMDTLTFNAPILYRHLTFSEAKKQPISEINLQKALE 215
Query: 121 GMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENI----------- 169
G+E++ +FIDLCILLGCDY + I+GIGPK A++L++++ + ++E++
Sbjct: 216 GLEMNMSQFIDLCILLGCDYLEPIKGIGPKSALKLVRDYGDLGAVIEHLREKTAAKEEAA 275
Query: 170 -----DTKKYTVPEGWLYKEARELFRHPEVADPETIEF 202
VP+ W ++EA+++F P+V E ++
Sbjct: 276 EEGKKKKGGIQVPDEWPWEEAKKVFEQPDVIPAEKVDL 313
Score = 110 bits (276), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 56/94 (59%), Positives = 69/94 (73%), Gaps = 8/94 (8%)
Query: 305 LVADVAPSSIRE-------SRKICIDASMSLYQFLIAVRSEGNQLMSVD-GEPTSHLMGT 356
L++ AP +I E RK+ IDASMS+YQFLIAVR + +L++ + GE TSHLMG
Sbjct: 9 LISQHAPKAIAEHDIKTLFGRKVAIDASMSIYQFLIAVRQKDGELLTNESGETTSHLMGF 68
Query: 357 FYRTIRLVEHGLKPIYVFDGKPPTLKSGELNKRM 390
FYRTIR+VE+G+KP YVFDGKPP LKSG L KR
Sbjct: 69 FYRTIRIVENGIKPAYVFDGKPPDLKSGVLAKRF 102
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 30/93 (32%), Positives = 54/93 (58%), Gaps = 16/93 (17%)
Query: 229 LYSFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENI---------------- 272
+ FIDLCILLGCDY + I+GIGPK A++L++++ + ++E++
Sbjct: 221 MSQFIDLCILLGCDYLEPIKGIGPKSALKLVRDYGDLGAVIEHLREKTAAKEEAAEEGKK 280
Query: 273 DTKKYTVPEGWLYKEARELFRHPEIADPETIEL 305
VP+ W ++EA+++F P++ E ++L
Sbjct: 281 KKGGIQVPDEWPWEEAKKVFEQPDVIPAEKVDL 313
Score = 63.2 bits (152), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 27/53 (50%), Positives = 38/53 (71%)
Query: 1 MTLKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSSTTQGRLDSFFTI 53
+ L+W PD DGLV++L +K F E+R+R GA+KL K ++ QGRLD FFT+
Sbjct: 311 VDLEWKAPDVDGLVQFLVTEKGFNEERVRKGAEKLAKYLNAKQQGRLDGFFTV 363
Score = 62.8 bits (151), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 28/55 (50%), Positives = 38/55 (69%)
Query: 405 EQGKLKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSTTTQGRLDSFFTI 459
E+ L+W PD DGLV++L +K F E+R+R GA+KL K + QGRLD FFT+
Sbjct: 309 EKVDLEWKAPDVDGLVQFLVTEKGFNEERVRKGAEKLAKYLNAKQQGRLDGFFTV 363
>gi|353235791|emb|CCA67798.1| probable DNA repair endonuclease rad2 [Piriformospora indica DSM
11827]
Length = 366
Score = 152 bits (383), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 71/160 (44%), Positives = 103/160 (64%), Gaps = 18/160 (11%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVLE 120
AP EAEAQCA + + G VY +EDMD LTF S ILLRH+TFSE RK P+ E L VLE
Sbjct: 120 APSEAEAQCAELARGGLVYGAGSEDMDTLTFNSPILLRHLTFSENRKEPILEISLPAVLE 179
Query: 121 GMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYT----- 175
G+E+ +F++LCILLGCDY + I+G+GPK A++L++EH S+ ++E++ +K+ +
Sbjct: 180 GLEMDMPQFVELCILLGCDYLEPIKGVGPKSALKLLREHGSLGAVVEHLRSKQASREDAD 239
Query: 176 -------------VPEGWLYKEARELFRHPEVADPETIEF 202
VPE W ++ A++LF P+V ++ E
Sbjct: 240 EEGEGKKKKGGVHVPEEWPWERAKDLFLQPDVTPADSFEL 279
Score = 105 bits (262), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 53/83 (63%), Positives = 65/83 (78%), Gaps = 1/83 (1%)
Query: 326 MSLYQFLIAVRS-EGNQLMSVDGEPTSHLMGTFYRTIRLVEHGLKPIYVFDGKPPTLKSG 384
MS+YQFLIAVR +G L + GE TSHLMG FYRTIR+VE+G+KP YVFDGKPP LKSG
Sbjct: 1 MSIYQFLIAVRQRDGETLQNEQGETTSHLMGFFYRTIRMVENGIKPCYVFDGKPPELKSG 60
Query: 385 ELNKRMEKREDAQKALAKAQEQG 407
L KR E+RE+A++ +A+E G
Sbjct: 61 VLAKRFERREEAKEEGDEAKEVG 83
Score = 73.2 bits (178), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 32/92 (34%), Positives = 57/92 (61%), Gaps = 18/92 (19%)
Query: 232 FIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYT------------- 278
F++LCILLGCDY + I+G+GPK A++L++EH S+ ++E++ +K+ +
Sbjct: 188 FVELCILLGCDYLEPIKGVGPKSALKLLREHGSLGAVVEHLRSKQASREDADEEGEGKKK 247
Query: 279 -----VPEGWLYKEARELFRHPEIADPETIEL 305
VPE W ++ A++LF P++ ++ EL
Sbjct: 248 KGGVHVPEEWPWERAKDLFLQPDVTPADSFEL 279
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 28/51 (54%), Positives = 36/51 (70%)
Query: 3 LKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSSTTQGRLDSFFTI 53
L+W PD DGLV++L +K F EDR+R GA+KL K + QGRLDSFF +
Sbjct: 279 LEWKAPDLDGLVQFLVTEKGFNEDRVRKGAEKLTKHIGAKQQGRLDSFFKV 329
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 28/52 (53%), Positives = 36/52 (69%)
Query: 408 KLKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSTTTQGRLDSFFTI 459
+L+W PD DGLV++L +K F EDR+R GA+KL K QGRLDSFF +
Sbjct: 278 ELEWKAPDLDGLVQFLVTEKGFNEDRVRKGAEKLTKHIGAKQQGRLDSFFKV 329
>gi|38488751|ref|NP_942115.1| flap endonuclease 1 [Danio rerio]
gi|29436437|gb|AAH49413.1| Flap structure-specific endonuclease 1 [Danio rerio]
Length = 330
Score = 150 bits (379), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 76/125 (60%), Positives = 94/125 (75%), Gaps = 7/125 (5%)
Query: 304 ELVADVAPSSIRE-------SRKICIDASMSLYQFLIAVRSEGNQLMSVDGEPTSHLMGT 356
+L+AD APS+I+E RKI IDASM +YQFLIAVR +GN L + DGE TSHLMG
Sbjct: 8 KLIADHAPSAIKEHEIKSYFGRKIAIDASMCIYQFLIAVRQDGNVLQNEDGETTSHLMGM 67
Query: 357 FYRTIRLVEHGLKPIYVFDGKPPTLKSGELNKRMEKREDAQKALAKAQEQGKLKWSDPDE 416
FYRTIR++E G+KP+YVFDGKPP LKSGEL KR+E+R +A+K LA+AQE G+ + D
Sbjct: 68 FYRTIRMLESGIKPVYVFDGKPPQLKSGELEKRVERRAEAEKLLAQAQEAGEQENIDKFS 127
Query: 417 DGLVK 421
LVK
Sbjct: 128 KRLVK 132
Score = 120 bits (300), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 50/75 (66%), Positives = 65/75 (86%)
Query: 60 KAPCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVL 119
+APCEAEA CAA+VKAGKVYATATEDMD LTFG+ +LLRH+T SEA+KLP+QEFH ++L
Sbjct: 154 EAPCEAEASCAALVKAGKVYATATEDMDGLTFGTTVLLRHLTASEAKKLPIQEFHFSRIL 213
Query: 120 EGMELSHEEFIDLCI 134
+ MEL+H++ +D +
Sbjct: 214 QDMELTHQQAVDTSV 228
>gi|348500556|ref|XP_003437839.1| PREDICTED: probable flap endonuclease 1 homolog [Oreochromis
niloticus]
Length = 348
Score = 149 bits (377), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 70/142 (49%), Positives = 104/142 (73%), Gaps = 3/142 (2%)
Query: 60 KAPCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVL 119
+AP +AEA CA +V+ G V+A A+EDMD L FG+NIL+R + + + V E+ L K+L
Sbjct: 123 QAPGDAEALCAQLVREGTVHAVASEDMDTLPFGANILIRQLNAKKDSE--VIEYSLPKLL 180
Query: 120 EGMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEG 179
E +++ H+EF+DLCILLGCDYC+ I G+GPKRA+ LI++HR+IE ++ +I+ K + VP
Sbjct: 181 EKLQIGHKEFVDLCILLGCDYCEKIPGLGPKRALTLIQKHRTIEDVVLHINRKTHPVPNI 240
Query: 180 WLYKEARELFRH-PEVADPETI 200
W Y+EAR++F P+ + PE I
Sbjct: 241 WKYREARKIFLDGPQSSAPELI 262
Score = 89.0 bits (219), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 39/73 (53%), Positives = 56/73 (76%), Gaps = 1/73 (1%)
Query: 232 FIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGWLYKEAREL 291
F+DLCILLGCDYC+ I G+GPKRA+ LI++HR+IE ++ +I+ K + VP W Y+EAR++
Sbjct: 190 FVDLCILLGCDYCEKIPGLGPKRALTLIQKHRTIEDVVLHINRKTHPVPNIWKYREARKI 249
Query: 292 FRH-PEIADPETI 303
F P+ + PE I
Sbjct: 250 FLDGPQSSAPELI 262
Score = 55.5 bits (132), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 33/95 (34%), Positives = 48/95 (50%), Gaps = 19/95 (20%)
Query: 304 ELVADVAPSSIR-------ESRKICIDASMSLYQFLIAVRSEGNQLMSVDGEPTSHLMGT 356
+L+ AP +I + I +D S+ + QF A L+S L G
Sbjct: 8 DLIRSDAPDAISYKDITDYTGKVIALDTSIVVNQFRAA-----TPLLS-------PLTGL 55
Query: 357 FYRTIRLVEHGLKPIYVFDGKPPTLKSGELNKRME 391
F+RT+ +EHG+KP++VFDGKPP K L KR +
Sbjct: 56 FFRTLTFLEHGIKPVFVFDGKPPGEKKAVLEKRAQ 90
>gi|409079272|gb|EKM79634.1| hypothetical protein AGABI1DRAFT_114134 [Agaricus bisporus var.
burnettii JB137-S8]
Length = 423
Score = 149 bits (376), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 75/186 (40%), Positives = 107/186 (57%), Gaps = 44/186 (23%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVLE 120
AP EAEAQCA + + GKVYA +EDMD LTF + IL RH+TFSEA+K P+ E +LE L+
Sbjct: 156 APSEAEAQCAELARGGKVYAAGSEDMDTLTFNAPILYRHLTFSEAKKQPISEINLEAALK 215
Query: 121 GMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKK------- 173
G+E++ +FIDLCILLGCDY + IRG+GPK A++LI+E+ S+ KI+ ++ K+
Sbjct: 216 GLEMNMSQFIDLCILLGCDYLEPIRGVGPKSALKLIREYGSLGKIIAHLREKEADKKAAA 275
Query: 174 -------------------------------------YTVPEGWLYKEARELFRHPEVAD 196
VPE W ++EA++LF +P+V
Sbjct: 276 QSADEAEDEPAPTSDAEPAEDEPKKKPKKGKGKGAGGIKVPEDWPWEEAKKLFENPDVVP 335
Query: 197 PETIEF 202
+ +E
Sbjct: 336 ADQLEL 341
Score = 117 bits (294), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 57/94 (60%), Positives = 72/94 (76%), Gaps = 8/94 (8%)
Query: 305 LVADVAPSSIRE-------SRKICIDASMSLYQFLIAVRSEGNQLMSVD-GEPTSHLMGT 356
L++ +AP++IRE RK+ IDASMS+YQFLIAVR + +++S D GE TSHLMG
Sbjct: 9 LISQLAPAAIREHEIKTLFGRKVAIDASMSIYQFLIAVRQKDGEMLSNDAGETTSHLMGF 68
Query: 357 FYRTIRLVEHGLKPIYVFDGKPPTLKSGELNKRM 390
FYRTIR+VE+G+KP YVFDGKPP LK G L+KR
Sbjct: 69 FYRTIRIVENGIKPAYVFDGKPPELKKGVLSKRF 102
Score = 67.4 bits (163), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 37/121 (30%), Positives = 58/121 (47%), Gaps = 44/121 (36%)
Query: 229 LYSFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKK------------ 276
+ FIDLCILLGCDY + IRG+GPK A++LI+E+ S+ KI+ ++ K+
Sbjct: 221 MSQFIDLCILLGCDYLEPIRGVGPKSALKLIREYGSLGKIIAHLREKEADKKAAAQSADE 280
Query: 277 --------------------------------YTVPEGWLYKEARELFRHPEIADPETIE 304
VPE W ++EA++LF +P++ + +E
Sbjct: 281 AEDEPAPTSDAEPAEDEPKKKPKKGKGKGAGGIKVPEDWPWEEAKKLFENPDVVPADQLE 340
Query: 305 L 305
L
Sbjct: 341 L 341
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 29/60 (48%), Positives = 46/60 (76%)
Query: 405 EQGKLKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSTTTQGRLDSFFTIRREEK 464
+Q +L+W++PD DGLV++L +K F E+R+R GA+KL K +T QGRLD FF+++ ++K
Sbjct: 337 DQLELEWNNPDVDGLVQFLVQEKGFNEERVRKGAEKLQKFLNTKQQGRLDGFFSVKPKDK 396
Score = 65.5 bits (158), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 49/69 (71%)
Query: 1 MTLKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSSTTQGRLDSFFTIRREEKRK 60
+ L+W++PD DGLV++L +K F E+R+R GA+KL K ++ QGRLD FF+++ ++K
Sbjct: 339 LELEWNNPDVDGLVQFLVQEKGFNEERVRKGAEKLQKFLNTKQQGRLDGFFSVKPKDKPA 398
Query: 61 APCEAEAQC 69
+++++
Sbjct: 399 PATKSDSKT 407
>gi|74824687|sp|Q9GZ01.1|FEN1_PLAFA RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|9885425|gb|AAG01445.1| flap endonuclease-1 [Plasmodium falciparum]
Length = 650
Score = 149 bits (376), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 75/153 (49%), Positives = 100/153 (65%), Gaps = 11/153 (7%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEA-----------RKLP 109
APCEAE+QCA + K +ATATED DAL FG+ IL+R++ + R
Sbjct: 157 APCEAESQCAFLTKYNLAHATATEDADALVFGTKILIRNLNANATSNQNKNKNNSKRGYI 216
Query: 110 VQEFHLEKVLEGMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENI 169
+ E +LE+VL+G+ L+ +EFID CIL GCDYCD+I+GIG K A LIKE+ IEKI+ENI
Sbjct: 217 LTEINLEQVLKGLNLTMDEFIDFCILCGCDYCDTIKGIGSKTAYNLIKEYNCIEKIIENI 276
Query: 170 DTKKYTVPEGWLYKEARELFRHPEVADPETIEF 202
D KY VP + ++EAR+ F +P V E I+
Sbjct: 277 DQNKYQVPSNFRFQEARKSFINPNVLPKEDIKI 309
Score = 120 bits (301), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 63/115 (54%), Positives = 79/115 (68%), Gaps = 11/115 (9%)
Query: 305 LVADVAPSSIRE-------SRKICIDASMSLYQFLIAVRSE---GNQLMSVDGEPTSHLM 354
+AD AP++I+E R I IDASMSLYQF+IA+R GN L + GE TSH+
Sbjct: 9 FIADAAPNAIKEIKIESLMGRIIAIDASMSLYQFIIAIRDSEQYGN-LTNESGETTSHIS 67
Query: 355 GTFYRTIRLVEHGLKPIYVFDGKPPTLKSGELNKRMEKREDAQKALAKAQEQGKL 409
G R+IRL+E+GLKPIYVFDG PP LK EL KR EKR+ A++ L KA+E+G L
Sbjct: 68 GLMSRSIRLMENGLKPIYVFDGAPPELKGSELEKRGEKRQKAEELLKKAKEEGNL 122
Score = 90.9 bits (224), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 74/218 (33%), Positives = 112/218 (51%), Gaps = 25/218 (11%)
Query: 232 FIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGWLYKEAREL 291
FID CIL GCDYCD+I+GIG K A LIKE+ IEKI+ENID KY VP + ++EAR+
Sbjct: 236 FIDFCILCGCDYCDTIKGIGSKTAYNLIKEYNCIEKIIENIDQNKYQVPSNFRFQEARKS 295
Query: 292 FRHPEIADPETIELVADVAPSSIRESRKICIDASMSLYQFL-IAVRSEGNQLMSVDGEPT 350
F +P + E I++ D I E + I Y F + V + N+L+ T
Sbjct: 296 FINPNVLPKEDIKI--DWNEPQIEELKHFLIKD----YNFNELRVTNYINRLLKARKVTT 349
Query: 351 SHLMGTFY-----RTIRLVEHGLKPIYVFDG----KPPTLKSGELNKRMEKREDAQKALA 401
+ F+ ++ +L+ K K PT +G+ NK+ + ++A A
Sbjct: 350 QRRLDNFFTACTKKSTKLIVEETKKEQTLPARKGKKRPT--AGDKNKQKAVKRKIEQANA 407
Query: 402 ----KAQEQGKLKWSDPDEDGLVKYLCGDKNFAEDRIR 435
K +E+ K ++ +EDG +K + +KN ED I+
Sbjct: 408 NGHHKMKEENKSVDNEKNEDG-IKSVDNEKN--EDGIK 442
Score = 52.8 bits (125), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 26/55 (47%), Positives = 35/55 (63%)
Query: 404 QEQGKLKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSTTTQGRLDSFFT 458
+E K+ W++P + L +L D NF E R+ N +LLKAR TTQ RLD+FFT
Sbjct: 304 KEDIKIDWNEPQIEELKHFLIKDYNFNELRVTNYINRLLKARKVTTQRRLDNFFT 358
Score = 50.1 bits (118), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/52 (46%), Positives = 33/52 (63%)
Query: 1 MTLKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSSTTQGRLDSFFT 52
+ + W++P + L +L D NF E R+ N +LLKAR TTQ RLD+FFT
Sbjct: 307 IKIDWNEPQIEELKHFLIKDYNFNELRVTNYINRLLKARKVTTQRRLDNFFT 358
>gi|124505315|ref|XP_001351399.1| flap endonuclease 1 [Plasmodium falciparum 3D7]
gi|74876406|sp|Q7K734.1|FEN1_PLAF7 RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|11559508|gb|AAG37989.1|AF093702_1 flap endonuclease 1 [Plasmodium falciparum]
gi|6562723|emb|CAB62862.1| flap endonuclease 1 [Plasmodium falciparum 3D7]
Length = 672
Score = 149 bits (376), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 75/153 (49%), Positives = 100/153 (65%), Gaps = 11/153 (7%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEA-----------RKLP 109
APCEAE+QCA + K +ATATED DAL FG+ IL+R++ + R
Sbjct: 157 APCEAESQCAFLTKYNLAHATATEDADALVFGTKILIRNLNANATSNQNKNKNNSKRGYI 216
Query: 110 VQEFHLEKVLEGMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENI 169
+ E +LE+VL+G+ L+ +EFID CIL GCDYCD+I+GIG K A LIKE+ IEKI+ENI
Sbjct: 217 LTEINLEQVLKGLNLTMDEFIDFCILCGCDYCDTIKGIGSKTAYNLIKEYNCIEKIIENI 276
Query: 170 DTKKYTVPEGWLYKEARELFRHPEVADPETIEF 202
D KY VP + ++EAR+ F +P V E I+
Sbjct: 277 DQNKYQVPSNFRFQEARKSFINPNVLPKEDIKI 309
Score = 120 bits (302), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 63/115 (54%), Positives = 79/115 (68%), Gaps = 11/115 (9%)
Query: 305 LVADVAPSSIRE-------SRKICIDASMSLYQFLIAVRSE---GNQLMSVDGEPTSHLM 354
+AD AP++I+E R I IDASMSLYQF+IA+R GN L + GE TSH+
Sbjct: 9 FIADAAPNAIKEIKIESLMGRIIAIDASMSLYQFIIAIRDSEQYGN-LTNESGETTSHIS 67
Query: 355 GTFYRTIRLVEHGLKPIYVFDGKPPTLKSGELNKRMEKREDAQKALAKAQEQGKL 409
G R+IRL+E+GLKPIYVFDG PP LK EL KR EKR+ A++ L KA+E+G L
Sbjct: 68 GLMSRSIRLMENGLKPIYVFDGAPPELKGSELEKRGEKRQKAEELLKKAKEEGNL 122
Score = 90.5 bits (223), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 74/218 (33%), Positives = 112/218 (51%), Gaps = 25/218 (11%)
Query: 232 FIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGWLYKEAREL 291
FID CIL GCDYCD+I+GIG K A LIKE+ IEKI+ENID KY VP + ++EAR+
Sbjct: 236 FIDFCILCGCDYCDTIKGIGSKTAYNLIKEYNCIEKIIENIDQNKYQVPSNFRFQEARKS 295
Query: 292 FRHPEIADPETIELVADVAPSSIRESRKICIDASMSLYQFL-IAVRSEGNQLMSVDGEPT 350
F +P + E I++ D I E + I Y F + V + N+L+ T
Sbjct: 296 FINPNVLPKEDIKI--DWNEPQIEELKHFLIKD----YNFNELRVTNYINRLLKARKVTT 349
Query: 351 SHLMGTFY-----RTIRLVEHGLKPIYVFDG----KPPTLKSGELNKRMEKREDAQKALA 401
+ F+ ++ +L+ K K PT +G+ NK+ + ++A A
Sbjct: 350 QRRLDNFFTACTKKSTKLIVEETKKEQTLPARKGKKRPT--AGDKNKQKAVKRKIEQANA 407
Query: 402 ----KAQEQGKLKWSDPDEDGLVKYLCGDKNFAEDRIR 435
K +E+ K ++ +EDG +K + +KN ED I+
Sbjct: 408 NGHHKMKEENKSVDNEKNEDG-IKSVDNEKN--EDGIK 442
Score = 52.4 bits (124), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 26/55 (47%), Positives = 35/55 (63%)
Query: 404 QEQGKLKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSTTTQGRLDSFFT 458
+E K+ W++P + L +L D NF E R+ N +LLKAR TTQ RLD+FFT
Sbjct: 304 KEDIKIDWNEPQIEELKHFLIKDYNFNELRVTNYINRLLKARKVTTQRRLDNFFT 358
Score = 49.7 bits (117), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/52 (46%), Positives = 33/52 (63%)
Query: 1 MTLKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSSTTQGRLDSFFT 52
+ + W++P + L +L D NF E R+ N +LLKAR TTQ RLD+FFT
Sbjct: 307 IKIDWNEPQIEELKHFLIKDYNFNELRVTNYINRLLKARKVTTQRRLDNFFT 358
>gi|221222286|gb|ACM09804.1| Flap endonuclease 1-A [Salmo salar]
Length = 192
Score = 149 bits (376), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 75/125 (60%), Positives = 94/125 (75%), Gaps = 7/125 (5%)
Query: 304 ELVADVAPSSIRE-------SRKICIDASMSLYQFLIAVRSEGNQLMSVDGEPTSHLMGT 356
+L+AD APS+I+E RKI IDASM +YQFL+AVR +GN L + +GE TSHLMG
Sbjct: 8 KLIADQAPSAIKEQDIKNYFGRKIAIDASMCMYQFLVAVRQDGNVLQNENGETTSHLMGM 67
Query: 357 FYRTIRLVEHGLKPIYVFDGKPPTLKSGELNKRMEKREDAQKALAKAQEQGKLKWSDPDE 416
FYRTIR++EHG+KP+YVFDGKPP LKSGEL KR E+R +A+K LA+AQE G+ + D
Sbjct: 68 FYRTIRMLEHGIKPVYVFDGKPPQLKSGELEKRGERRAEAEKLLAQAQEAGEQENIDKFS 127
Query: 417 DGLVK 421
LVK
Sbjct: 128 KRLVK 132
>gi|37719664|gb|AAR01941.1| flap endonuclease 1 [Plasmodium falciparum]
Length = 648
Score = 149 bits (375), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 75/153 (49%), Positives = 100/153 (65%), Gaps = 11/153 (7%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEA-----------RKLP 109
APCEAE+QCA + K +ATATED DAL FG+ IL+R++ + R
Sbjct: 157 APCEAESQCAFLTKYNLAHATATEDADALVFGTKILIRNLNANATSNQNKNKNNSKRGYI 216
Query: 110 VQEFHLEKVLEGMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENI 169
+ E +LE+VL+G+ L+ +EFID CIL GCDYCD+I+GIG K A LIKE+ IEKI+ENI
Sbjct: 217 LTEINLEQVLKGLNLTMDEFIDFCILCGCDYCDTIKGIGSKTAYNLIKEYNCIEKIIENI 276
Query: 170 DTKKYTVPEGWLYKEARELFRHPEVADPETIEF 202
D KY VP + ++EAR+ F +P V E I+
Sbjct: 277 DQNKYQVPSNFRFQEARKPFINPNVLPKEDIKI 309
Score = 120 bits (300), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 63/115 (54%), Positives = 79/115 (68%), Gaps = 11/115 (9%)
Query: 305 LVADVAPSSIRE-------SRKICIDASMSLYQFLIAVRSE---GNQLMSVDGEPTSHLM 354
+AD AP++I+E R I IDASMSLYQF+IA+R GN L + GE TSH+
Sbjct: 9 FIADAAPNAIKEIKIESLMGRIIAIDASMSLYQFIIAIRDSEQYGN-LTNESGETTSHIS 67
Query: 355 GTFYRTIRLVEHGLKPIYVFDGKPPTLKSGELNKRMEKREDAQKALAKAQEQGKL 409
G R+IRL+E+GLKPIYVFDG PP LK EL KR EKR+ A++ L KA+E+G L
Sbjct: 68 GLMSRSIRLMENGLKPIYVFDGAPPELKGSELEKRGEKRQKAEELLKKAKEEGNL 122
Score = 92.4 bits (228), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 74/219 (33%), Positives = 113/219 (51%), Gaps = 27/219 (12%)
Query: 232 FIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGWLYKEAREL 291
FID CIL GCDYCD+I+GIG K A LIKE+ IEKI+ENID KY VP + ++EAR+
Sbjct: 236 FIDFCILCGCDYCDTIKGIGSKTAYNLIKEYNCIEKIIENIDQNKYQVPSNFRFQEARKP 295
Query: 292 FRHPEIADPETIELVADVAPSSIRESRKICIDASMSLYQFL-IAVRSEGNQLMSVDGEPT 350
F +P + E I++ D I E + I Y F + V + N+L+ T
Sbjct: 296 FINPNVLPKEDIKI--DWNEPQIEELKHFLIKD----YNFNELRVTNYINRLLKARKVTT 349
Query: 351 SHLMGTFY-----RTIRLVEHGLK-----PIYVFDGKPPTLKSGELNKRMEKREDAQKAL 400
+ F+ ++ +L+ K P +PP +G+ NK+ + ++A
Sbjct: 350 QRRLDNFFTACTKKSTKLIVEETKKEQTLPARKGKKRPP---AGDKNKQKAVKRKIEQAN 406
Query: 401 A----KAQEQGKLKWSDPDEDGLVKYLCGDKNFAEDRIR 435
A K +E+ K ++ +EDG +K + +KN ED I+
Sbjct: 407 ANGHHKMKEENKSVDNEKNEDG-IKSVDNEKN--EDGIK 442
Score = 52.8 bits (125), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 26/55 (47%), Positives = 35/55 (63%)
Query: 404 QEQGKLKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSTTTQGRLDSFFT 458
+E K+ W++P + L +L D NF E R+ N +LLKAR TTQ RLD+FFT
Sbjct: 304 KEDIKIDWNEPQIEELKHFLIKDYNFNELRVTNYINRLLKARKVTTQRRLDNFFT 358
Score = 50.1 bits (118), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/52 (46%), Positives = 33/52 (63%)
Query: 1 MTLKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSSTTQGRLDSFFT 52
+ + W++P + L +L D NF E R+ N +LLKAR TTQ RLD+FFT
Sbjct: 307 IKIDWNEPQIEELKHFLIKDYNFNELRVTNYINRLLKARKVTTQRRLDNFFT 358
>gi|426196176|gb|EKV46105.1| hypothetical protein AGABI2DRAFT_193982 [Agaricus bisporus var.
bisporus H97]
Length = 429
Score = 149 bits (375), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 75/186 (40%), Positives = 107/186 (57%), Gaps = 44/186 (23%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVLE 120
AP EAEAQCA + + GKVYA +EDMD LTF + IL RH+TFSEA+K P+ E +LE L+
Sbjct: 156 APSEAEAQCAELARGGKVYAAGSEDMDTLTFNAPILYRHLTFSEAKKQPISEINLEVALK 215
Query: 121 GMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKK------- 173
G+E++ +FIDLCILLGCDY + IRG+GPK A++LI+E+ S+ KI+ ++ K+
Sbjct: 216 GLEMNMSQFIDLCILLGCDYLEPIRGVGPKSALKLIREYGSLGKIIAHLREKEADKKAAA 275
Query: 174 -------------------------------------YTVPEGWLYKEARELFRHPEVAD 196
VPE W ++EA++LF +P+V
Sbjct: 276 QSADEAEDEPAPTSDAEPAEDEPKKKPKKGKGKGAGGIKVPEDWPWEEAKKLFENPDVVP 335
Query: 197 PETIEF 202
+ +E
Sbjct: 336 ADQLEL 341
Score = 116 bits (290), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 57/94 (60%), Positives = 71/94 (75%), Gaps = 8/94 (8%)
Query: 305 LVADVAPSSIRE-------SRKICIDASMSLYQFLIAVRSEGNQLMSVD-GEPTSHLMGT 356
L++ AP++IRE RK+ IDASMS+YQFLIAVR + +++S D GE TSHLMG
Sbjct: 9 LISQHAPAAIREHEIKTLFGRKVAIDASMSIYQFLIAVRQKDGEMLSNDAGETTSHLMGF 68
Query: 357 FYRTIRLVEHGLKPIYVFDGKPPTLKSGELNKRM 390
FYRTIR+VE+G+KP YVFDGKPP LK G L+KR
Sbjct: 69 FYRTIRIVENGIKPAYVFDGKPPDLKKGVLSKRF 102
Score = 67.4 bits (163), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 37/121 (30%), Positives = 58/121 (47%), Gaps = 44/121 (36%)
Query: 229 LYSFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKK------------ 276
+ FIDLCILLGCDY + IRG+GPK A++LI+E+ S+ KI+ ++ K+
Sbjct: 221 MSQFIDLCILLGCDYLEPIRGVGPKSALKLIREYGSLGKIIAHLREKEADKKAAAQSADE 280
Query: 277 --------------------------------YTVPEGWLYKEARELFRHPEIADPETIE 304
VPE W ++EA++LF +P++ + +E
Sbjct: 281 AEDEPAPTSDAEPAEDEPKKKPKKGKGKGAGGIKVPEDWPWEEAKKLFENPDVVPADQLE 340
Query: 305 L 305
L
Sbjct: 341 L 341
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 29/60 (48%), Positives = 46/60 (76%)
Query: 405 EQGKLKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSTTTQGRLDSFFTIRREEK 464
+Q +L+W++PD DGLV++L +K F E+R+R GA+KL K +T QGRLD FF+++ ++K
Sbjct: 337 DQLELEWNNPDVDGLVQFLVQEKGFNEERVRKGAEKLQKFLNTKQQGRLDGFFSVKPKDK 396
Score = 65.5 bits (158), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 49/69 (71%)
Query: 1 MTLKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSSTTQGRLDSFFTIRREEKRK 60
+ L+W++PD DGLV++L +K F E+R+R GA+KL K ++ QGRLD FF+++ ++K
Sbjct: 339 LELEWNNPDVDGLVQFLVQEKGFNEERVRKGAEKLQKFLNTKQQGRLDGFFSVKPKDKPA 398
Query: 61 APCEAEAQC 69
+++++
Sbjct: 399 PATKSDSKT 407
>gi|356927843|gb|AET42633.1| flap endonuclease-1 [Emiliania huxleyi virus 202]
Length = 358
Score = 148 bits (374), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 70/141 (49%), Positives = 98/141 (69%), Gaps = 6/141 (4%)
Query: 60 KAPCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVL 119
+APCEAEA CAA VKAGK YATATEDMD+LTFGS ++RH+ ++ +K P E+ L +L
Sbjct: 152 QAPCEAEATCAAYVKAGKAYATATEDMDSLTFGSTHVIRHINSTDQKKQPTVEYSLPNIL 211
Query: 120 EGMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKK------ 173
M ++ ++FI++CIL GCDY +I+GIGP RA +LI+EH +IE +L+ + K
Sbjct: 212 NDMGITMDQFIEICILSGCDYTKTIKGIGPTRAYQLIQEHSTIENVLDVLKKKHGEEQFV 271
Query: 174 YTVPEGWLYKEARELFRHPEV 194
VPE + + RELF +P+V
Sbjct: 272 TMVPEYYPIEAVRELFNNPDV 292
Score = 98.2 bits (243), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 49/82 (59%), Positives = 59/82 (71%), Gaps = 1/82 (1%)
Query: 320 ICIDASMSLYQFLIAVR-SEGNQLMSVDGEPTSHLMGTFYRTIRLVEHGLKPIYVFDGKP 378
I IDASM +YQ LIA+R QL + +GE TSHL G FYRTIRL+E G+KP+YVFDGKP
Sbjct: 31 IMIDASMQIYQCLIAIRQGPSGQLAAPEGEVTSHLTGLFYRTIRLIEAGIKPVYVFDGKP 90
Query: 379 PTLKSGELNKRMEKREDAQKAL 400
P LK EL+KR E++ A L
Sbjct: 91 PQLKQKELDKRNERQAQALSEL 112
Score = 69.7 bits (169), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 32/72 (44%), Positives = 47/72 (65%), Gaps = 6/72 (8%)
Query: 232 FIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKK------YTVPEGWLY 285
FI++CIL GCDY +I+GIGP RA +LI+EH +IE +L+ + K VPE +
Sbjct: 221 FIEICILSGCDYTKTIKGIGPTRAYQLIQEHSTIENVLDVLKKKHGEEQFVTMVPEYYPI 280
Query: 286 KEARELFRHPEI 297
+ RELF +P++
Sbjct: 281 EAVRELFNNPDV 292
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 37/61 (60%), Gaps = 3/61 (4%)
Query: 3 LKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSSTTQGRLDSFFTIRRE---EKR 59
L W PD + L+ +L +K F+ DR+ G +++L A++ TQ R+ FF +++ +KR
Sbjct: 298 LTWKPPDREALISFLVDEKKFSSDRVNKGCERILSAKAKGTQHRISQFFKVKQPAVGQKR 357
Query: 60 K 60
K
Sbjct: 358 K 358
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 38/62 (61%), Gaps = 3/62 (4%)
Query: 408 KLKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSTTTQGRLDSFFTIRRE---EK 464
+L W PD + L+ +L +K F+ DR+ G +++L A++ TQ R+ FF +++ +K
Sbjct: 297 ELTWKPPDREALISFLVDEKKFSSDRVNKGCERILSAKAKGTQHRISQFFKVKQPAVGQK 356
Query: 465 RK 466
RK
Sbjct: 357 RK 358
>gi|307102466|gb|EFN50740.1| hypothetical protein CHLNCDRAFT_37697 [Chlorella variabilis]
Length = 389
Score = 148 bits (373), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 76/158 (48%), Positives = 101/158 (63%), Gaps = 11/158 (6%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVLE 120
AP EAEAQCA + K G VY +TEDMD+LTFG+ L+RH+ ++K EF E VL+
Sbjct: 156 APSEAEAQCAQLCKDGLVYGISTEDMDSLTFGTPKLIRHLMAPSSQKPLAMEFDHELVLK 215
Query: 121 GMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGW 180
+EL+ ++FIDLCIL GCDY I GIG RA+ LIK+H SIE +L +D+KKY +PE +
Sbjct: 216 ELELTEDQFIDLCILCGCDYTAKISGIGAVRALSLIKKHGSIEGVLAALDSKKYQIPEPF 275
Query: 181 LYKEARELFRHPEVA-----------DPETIEFIDLCI 207
Y+EAR LF+ P+V P+T ID +
Sbjct: 276 PYQEARRLFKEPDVVKGDQIPQLKWTSPDTEGLIDFLV 313
Score = 107 bits (267), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 52/112 (46%), Positives = 75/112 (66%), Gaps = 8/112 (7%)
Query: 304 ELVADVAPSSIRE-------SRKICIDASMSLYQFLIAVRSEGNQLMSVD-GEPTSHLMG 355
+L+ D AP ++E RKI +DASM +Y FL+ V +G+Q+++ + GE TSHL G
Sbjct: 8 KLLGDAAPGCMKEQKFENYFGRKIAVDASMHIYAFLVVVGRQGDQMLTSETGEVTSHLQG 67
Query: 356 TFYRTIRLVEHGLKPIYVFDGKPPTLKSGELNKRMEKREDAQKALAKAQEQG 407
F+RT+R++E G+KP++VF+GK P LK EL KR +REDA L A+E G
Sbjct: 68 MFFRTVRMLEAGMKPVFVFEGKAPELKREELAKRSNRREDANTELEAAKEAG 119
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 40/82 (48%), Positives = 55/82 (67%)
Query: 232 FIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGWLYKEAREL 291
FIDLCIL GCDY I GIG RA+ LIK+H SIE +L +D+KKY +PE + Y+EAR L
Sbjct: 224 FIDLCILCGCDYTAKISGIGAVRALSLIKKHGSIEGVLAALDSKKYQIPEPFPYQEARRL 283
Query: 292 FRHPEIADPETIELVADVAPSS 313
F+ P++ + I + +P +
Sbjct: 284 FKEPDVVKGDQIPQLKWTSPDT 305
Score = 61.6 bits (148), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 25/58 (43%), Positives = 39/58 (67%)
Query: 400 LAKAQEQGKLKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSTTTQGRLDSFF 457
+ K + +LKW+ PD +GL+ +L +K FAEDRIR +++ A+ +QGRL+SFF
Sbjct: 289 VVKGDQIPQLKWTSPDTEGLIDFLVKEKTFAEDRIRKAVERINAAKGKASQGRLESFF 346
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 24/49 (48%), Positives = 35/49 (71%)
Query: 3 LKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSSTTQGRLDSFF 51
LKW+ PD +GL+ +L +K FAEDRIR +++ A+ +QGRL+SFF
Sbjct: 298 LKWTSPDTEGLIDFLVKEKTFAEDRIRKAVERINAAKGKASQGRLESFF 346
>gi|403358237|gb|EJY78757.1| Flap endonuclease 1-1 [Oxytricha trifallax]
Length = 967
Score = 148 bits (373), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 71/143 (49%), Positives = 100/143 (69%), Gaps = 12/143 (8%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVLE 120
AP EAEAQCA +VK G +ATA+EDMD+LTFG+ +LLR ++K P+ + LE+VLE
Sbjct: 160 APGEAEAQCAHLVKLGLAFATASEDMDSLTFGTKVLLRGFN---SKKEPIIQIDLEEVLE 216
Query: 121 GMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRS-IEKILENID--------T 171
G ++H++FIDLCIL GCDY SI GIGP +A + + EH IE +++ ++
Sbjct: 217 GFMMNHDQFIDLCILCGCDYTTSITGIGPIKAYQYLSEHGGIIENVIKKVEYENQKPWKK 276
Query: 172 KKYTVPEGWLYKEARELFRHPEV 194
KKY +PE +L+KEARELF++P +
Sbjct: 277 KKYHIPENFLFKEARELFKNPRI 299
Score = 88.2 bits (217), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 56/151 (37%), Positives = 87/151 (57%), Gaps = 20/151 (13%)
Query: 305 LVADVAPSSIRE-------SRKICIDASMSLYQFLIAVRS--EG---NQLMSVDGEPTSH 352
L+ + AP +++ + I DASM++YQFLIA ++ +G +L +G T H
Sbjct: 9 LIQEKAPKAVKTIQLEYLTGKVIACDASMAIYQFLIATQTMKQGMGIGELRDSNGNLTGH 68
Query: 353 LMGTFYRTIRLVEHGLKPIYVFDGKPPTLKSGELNKRMEKREDAQKALAKAQEQGKLKWS 412
L+G F+RTI+ +E G+KPI+VFDGKPP LK+ L++R E +E KA E+ K +
Sbjct: 69 LVGMFHRTIQFLESGIKPIWVFDGKPPDLKNRVLDQRKETKE-------KAVEEKKNRIE 121
Query: 413 DPDEDGLVKYLCGDKNFAEDRIRNGAKKLLK 443
+ D +G + D +R+ AKKLL+
Sbjct: 122 EGDMEGAKRMAGRSVKVTWDMMRD-AKKLLR 151
Score = 76.6 bits (187), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 37/75 (49%), Positives = 50/75 (66%), Gaps = 9/75 (12%)
Query: 232 FIDLCILLGCDYCDSIRGIGPKRAIELIKEHRS-IEKILENID--------TKKYTVPEG 282
FIDLCIL GCDY SI GIGP +A + + EH IE +++ ++ KKY +PE
Sbjct: 225 FIDLCILCGCDYTTSITGIGPIKAYQYLSEHGGIIENVIKKVEYENQKPWKKKKYHIPEN 284
Query: 283 WLYKEARELFRHPEI 297
+L+KEARELF++P I
Sbjct: 285 FLFKEARELFKNPRI 299
Score = 52.8 bits (125), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 23/50 (46%), Positives = 34/50 (68%)
Query: 408 KLKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSTTTQGRLDSFF 457
K+KW+ PDE+GL ++L K F++ ++ +G KKL + T QGRLD FF
Sbjct: 309 KIKWTKPDEEGLKEFLITQKGFSDVKVDSGLKKLKGCQGKTNQGRLDCFF 358
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/49 (44%), Positives = 33/49 (67%)
Query: 3 LKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSSTTQGRLDSFF 51
+KW+ PDE+GL ++L K F++ ++ +G KKL + T QGRLD FF
Sbjct: 310 IKWTKPDEEGLKEFLITQKGFSDVKVDSGLKKLKGCQGKTNQGRLDCFF 358
>gi|432911452|ref|XP_004078686.1| PREDICTED: probable flap endonuclease 1 homolog [Oryzias latipes]
Length = 343
Score = 147 bits (372), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 67/144 (46%), Positives = 101/144 (70%), Gaps = 4/144 (2%)
Query: 60 KAPCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVL 119
+AP +AE CA++V+ G+ +A A+EDMD L FG+N+L+R + + + + E+ L K+L
Sbjct: 123 QAPGDAEGLCASLVREGRAHAVASEDMDTLPFGANVLIRQLNAKKDSE--IVEYSLPKLL 180
Query: 120 EGMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEG 179
E + +S EE +DLCILLGCDYCD I G+GPKRA+ LI++HR+IE +L NI+ + + VP
Sbjct: 181 EALRISLEELVDLCILLGCDYCDKIPGLGPKRALALIQKHRTIENVLLNINRETHPVPHL 240
Query: 180 WLYKEARELFRHPEVADPETIEFI 203
W +KE+R++F P P T E +
Sbjct: 241 WKFKESRQIFLDP--PGPPTPELV 262
Score = 92.8 bits (229), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 42/78 (53%), Positives = 56/78 (71%), Gaps = 2/78 (2%)
Query: 229 LYSFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGWLYKEA 288
L +DLCILLGCDYCD I G+GPKRA+ LI++HR+IE +L NI+ + + VP W +KE+
Sbjct: 187 LEELVDLCILLGCDYCDKIPGLGPKRALALIQKHRTIENVLLNINRETHPVPHLWKFKES 246
Query: 289 RELFRHPEIADPETIELV 306
R++F P P T ELV
Sbjct: 247 RQIFLDP--PGPPTPELV 262
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 33/95 (34%), Positives = 46/95 (48%), Gaps = 19/95 (20%)
Query: 304 ELVADVAPSSIRE-------SRKICIDASMSLYQFLIAVRSEGNQLMSVDGEPTSHLMGT 356
+L+ AP SI + I +D S+ + QF A +S L G
Sbjct: 8 DLIRAEAPDSISHRDISDYAGKVIALDTSVVVNQFRAATPL------------SSPLRGL 55
Query: 357 FYRTIRLVEHGLKPIYVFDGKPPTLKSGELNKRME 391
F+RT+ +EH +KP++VFDGKPP K L KR E
Sbjct: 56 FFRTLTFLEHDIKPVFVFDGKPPVEKLPLLEKRAE 90
>gi|401413646|ref|XP_003886270.1| putative flap endonuclease-1 [Neospora caninum Liverpool]
gi|325120690|emb|CBZ56245.1| putative flap endonuclease-1 [Neospora caninum Liverpool]
Length = 545
Score = 147 bits (372), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 74/148 (50%), Positives = 101/148 (68%), Gaps = 7/148 (4%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSE-----ARKLPVQEFHL 115
APCEAEAQCA + K KV+ATATED DALTFG+ L+R++TFSE A + L
Sbjct: 157 APCEAEAQCAELTKHKKVWATATEDADALTFGATRLIRNLTFSERTGSSASASAILVIDL 216
Query: 116 EKVLEGMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYT 175
+LE ++ S E+FID CIL GCDYC +++G+G K A LI+EH S+EKILE +D +K
Sbjct: 217 PTLLEELKFSQEQFIDFCILCGCDYCGTLKGVGAKTAYGLIREHGSVEKILEVVDPQK-- 274
Query: 176 VPEGWLYKEARELFRHPEVADPETIEFI 203
+PE + ++EAR FR+P+V + I+
Sbjct: 275 IPEAFCFQEARAFFRNPDVTPADQIQLT 302
Score = 112 bits (280), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 59/113 (52%), Positives = 74/113 (65%), Gaps = 11/113 (9%)
Query: 305 LVADVAPSSIRE-------SRKICIDASMSLYQFLIAVRSEGNQLMSVD---GEPTSHLM 354
V D AP +I+ R I IDASMSLYQF++A+R +GN + G+ TSH+
Sbjct: 9 FVGDFAPRAIKRQEVGSFTGRVIAIDASMSLYQFMVAIR-DGNSFGNFTNDAGDCTSHIA 67
Query: 355 GTFYRTIRLVEHGLKPIYVFDGKPPTLKSGELNKRMEKREDAQKALAKAQEQG 407
G R IRL+E G++P+YVFDGKPP LKSGEL KR E RE AQ A KA+E+G
Sbjct: 68 GMLNRAIRLLEQGIRPVYVFDGKPPELKSGELAKRREVRESAQVAAEKAREEG 120
Score = 85.5 bits (210), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 40/83 (48%), Positives = 58/83 (69%), Gaps = 5/83 (6%)
Query: 227 ELLYS---FIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGW 283
EL +S FID CIL GCDYC +++G+G K A LI+EH S+EKILE +D +K +PE +
Sbjct: 222 ELKFSQEQFIDFCILCGCDYCGTLKGVGAKTAYGLIREHGSVEKILEVVDPQK--IPEAF 279
Query: 284 LYKEARELFRHPEIADPETIELV 306
++EAR FR+P++ + I+L
Sbjct: 280 CFQEARAFFRNPDVTPADQIQLT 302
Score = 45.1 bits (105), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 31/53 (58%)
Query: 405 EQGKLKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSTTTQGRLDSFF 457
+Q +L W + D +GL +L + F E R+ N +L KAR T Q RL+SFF
Sbjct: 297 DQIQLTWGEVDVEGLKTFLVKENQFNEQRVENYIARLKKARGKTAQTRLESFF 349
Score = 44.7 bits (104), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 29/51 (56%)
Query: 1 MTLKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSSTTQGRLDSFF 51
+ L W + D +GL +L + F E R+ N +L KAR T Q RL+SFF
Sbjct: 299 IQLTWGEVDVEGLKTFLVKENQFNEQRVENYIARLKKARGKTAQTRLESFF 349
>gi|308321602|gb|ADO27952.1| flap endonuclease 1-b [Ictalurus furcatus]
Length = 140
Score = 147 bits (372), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 75/125 (60%), Positives = 93/125 (74%), Gaps = 7/125 (5%)
Query: 304 ELVADVAPSSIRE-------SRKICIDASMSLYQFLIAVRSEGNQLMSVDGEPTSHLMGT 356
+L+AD AP++IRE RKI IDASM +YQFLIAVR +GN L + DGE TSHLMG
Sbjct: 8 KLIADQAPTAIREQDIKNYFGRKIAIDASMCIYQFLIAVRQDGNVLQNDDGETTSHLMGM 67
Query: 357 FYRTIRLVEHGLKPIYVFDGKPPTLKSGELNKRMEKREDAQKALAKAQEQGKLKWSDPDE 416
FYRTIR+++ G+KP+YVFDGKPP LKSGEL KR E+R +A+K LA+AQE G+ + D
Sbjct: 68 FYRTIRMLDSGIKPVYVFDGKPPQLKSGELEKRGERRAEAEKLLAQAQETGEQENIDKFS 127
Query: 417 DGLVK 421
LVK
Sbjct: 128 KRLVK 132
>gi|403341860|gb|EJY70247.1| Flap endonuclease 1-1 [Oxytricha trifallax]
Length = 404
Score = 147 bits (370), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 74/141 (52%), Positives = 97/141 (68%), Gaps = 12/141 (8%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVLE 120
AP EAEAQCA +VK G YATA+EDMD+LTFG+N+LLR ++K P+ + L +VLE
Sbjct: 160 APGEAEAQCAVIVKHGLAYATASEDMDSLTFGTNVLLRGFN---SKKEPIIQIDLAQVLE 216
Query: 121 GMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEH-RSIEKILENID--------T 171
G L+HE+FIDLCIL GCDY +I G+GP +A + I E +IE ++ I+
Sbjct: 217 GFNLNHEQFIDLCILCGCDYTTNIPGVGPVKAFKFISEEGGTIENVISRIEKENDDPKKK 276
Query: 172 KKYTVPEGWLYKEARELFRHP 192
KKYT+PE + YKEARELF+ P
Sbjct: 277 KKYTIPETFYYKEARELFKVP 297
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 54/157 (34%), Positives = 88/157 (56%), Gaps = 20/157 (12%)
Query: 303 IELVADVAPSSIRE-------SRKICIDASMSLYQFLIAVRS--EG---NQLMSVDGEPT 350
+ L+ + AP +++ + + DASM++YQFLIA +S +G +++ +G T
Sbjct: 7 MTLIQEKAPKAVKTINLDLLTGKTVACDASMAIYQFLIATQSMKQGMGISEMRDSEGNLT 66
Query: 351 SHLMGTFYRTIRLVEHGLKPIYVFDGKPPTLKSGELNKRMEKREDAQKALAKAQEQGKLK 410
HL+G F+RTI+ +E+G+KPI+VFDGKPP LKS L++R E +E A++ + G L+
Sbjct: 67 GHLVGLFHRTIQFMENGVKPIWVFDGKPPELKSYVLDQRKENKEKAEETKQTMIDAGDLE 126
Query: 411 WSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARST 447
+ K + G + AKKLL+ T
Sbjct: 127 GA--------KRMAGRSIRVTPEMMEDAKKLLRLMGT 155
Score = 72.4 bits (176), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 40/85 (47%), Positives = 53/85 (62%), Gaps = 13/85 (15%)
Query: 232 FIDLCILLGCDYCDSIRGIGPKRAIELIKEH-RSIEKILENID--------TKKYTVPEG 282
FIDLCIL GCDY +I G+GP +A + I E +IE ++ I+ KKYT+PE
Sbjct: 225 FIDLCILCGCDYTTNIPGVGPVKAFKFISEEGGTIENVISRIEKENDDPKKKKKYTIPET 284
Query: 283 WLYKEARELFRHP----EIADPETI 303
+ YKEARELF+ P +IA+ E I
Sbjct: 285 FYYKEARELFKVPSAISDIAELEKI 309
Score = 44.7 bits (104), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 21/49 (42%), Positives = 28/49 (57%)
Query: 3 LKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSSTTQGRLDSFF 51
+K++ PDE L ++L K F E ++ NG KKL T Q RLD FF
Sbjct: 310 IKFNKPDEVALKEFLVTSKGFQEIKVENGIKKLKATAGKTNQARLDCFF 358
Score = 44.3 bits (103), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 21/49 (42%), Positives = 28/49 (57%)
Query: 409 LKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSTTTQGRLDSFF 457
+K++ PDE L ++L K F E ++ NG KKL T Q RLD FF
Sbjct: 310 IKFNKPDEVALKEFLVTSKGFQEIKVENGIKKLKATAGKTNQARLDCFF 358
>gi|70942151|ref|XP_741275.1| flap exonuclease [Plasmodium chabaudi chabaudi]
gi|74978262|sp|Q4XXP8.1|FEN1_PLACH RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|56519555|emb|CAH78313.1| flap exonuclease, putative [Plasmodium chabaudi chabaudi]
Length = 479
Score = 147 bits (370), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 75/157 (47%), Positives = 105/157 (66%), Gaps = 12/157 (7%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEA-----------RKLP 109
+PCEAEAQCA + K +ATATED DAL FG+ IL+R++ + + R
Sbjct: 157 SPCEAEAQCAFLTKYDMAHATATEDADALVFGTKILIRNLNANASSNKNKNKNSSKRGYI 216
Query: 110 VQEFHLEKVLEGMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENI 169
+ E +LE+VL+G++L+ +EFID CIL GCDYCD+I+GIG K A LIKE+ IE I++NI
Sbjct: 217 LTEINLEQVLKGLKLTMDEFIDFCILCGCDYCDTIKGIGSKTAYNLIKEYNCIENIIKNI 276
Query: 170 DTKKYTVPEGWLYKEARELFRHPEVADPETIEFIDLC 206
D KY VP+ + Y EAR+ F +P+V + ++ ID C
Sbjct: 277 DQNKYQVPDNFKYVEARQSFINPKVLEKSEVK-IDWC 312
Score = 122 bits (306), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 63/115 (54%), Positives = 82/115 (71%), Gaps = 11/115 (9%)
Query: 305 LVADVAPSSIRE-------SRKICIDASMSLYQFLIAVRSEGNQ---LMSVDGEPTSHLM 354
+AD AP++I+E R + IDASMSLYQF+IA+R +G+Q LM+ GE TSH+
Sbjct: 9 FIADTAPNAIKEIKIENLMGRVVAIDASMSLYQFIIAIR-DGDQYGNLMNEAGETTSHIS 67
Query: 355 GTFYRTIRLVEHGLKPIYVFDGKPPTLKSGELNKRMEKREDAQKALAKAQEQGKL 409
G RTI+L+E+GLKPIYVFDG PP LK EL KR EKR+ A++ L KA+E+G L
Sbjct: 68 GLMSRTIKLMENGLKPIYVFDGAPPELKGSELEKRGEKRQKAEELLLKAKEEGNL 122
Score = 86.3 bits (212), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 38/74 (51%), Positives = 53/74 (71%)
Query: 232 FIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGWLYKEAREL 291
FID CIL GCDYCD+I+GIG K A LIKE+ IE I++NID KY VP+ + Y EAR+
Sbjct: 236 FIDFCILCGCDYCDTIKGIGSKTAYNLIKEYNCIENIIKNIDQNKYQVPDNFKYVEARQS 295
Query: 292 FRHPEIADPETIEL 305
F +P++ + +++
Sbjct: 296 FINPKVLEKSEVKI 309
Score = 49.7 bits (117), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/51 (47%), Positives = 32/51 (62%)
Query: 408 KLKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSTTTQGRLDSFFT 458
K+ W +P + L +L + NF E R+ N +LLKAR TTQ RLD+FFT
Sbjct: 308 KIDWCEPKIEELKTFLIKEHNFNEVRVTNYITRLLKARKVTTQRRLDTFFT 358
Score = 47.8 bits (112), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 23/50 (46%), Positives = 31/50 (62%)
Query: 3 LKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSSTTQGRLDSFFT 52
+ W +P + L +L + NF E R+ N +LLKAR TTQ RLD+FFT
Sbjct: 309 IDWCEPKIEELKTFLIKEHNFNEVRVTNYITRLLKARKVTTQRRLDTFFT 358
>gi|58266500|ref|XP_570406.1| flap endonuclease [Cryptococcus neoformans var. neoformans JEC21]
gi|134111280|ref|XP_775782.1| hypothetical protein CNBD5110 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|338818103|sp|P0CS61.1|FEN1_CRYNB RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|338818104|sp|P0CS60.1|FEN1_CRYNJ RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|50258446|gb|EAL21135.1| hypothetical protein CNBD5110 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|57226639|gb|AAW43099.1| flap endonuclease, putative [Cryptococcus neoformans var.
neoformans JEC21]
Length = 453
Score = 146 bits (368), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 65/112 (58%), Positives = 89/112 (79%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVLE 120
AP EAEAQCA + +AGKVYA +EDMD LTF S ILLRH+TFSEA+K+P+ E HL+ L
Sbjct: 156 APGEAEAQCAELARAGKVYAAGSEDMDTLTFNSPILLRHLTFSEAKKMPISEIHLDVALR 215
Query: 121 GMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTK 172
+E+S ++FI+LCILLGCDY + +GIGPK A++L++EH ++ K++E+I K
Sbjct: 216 DLEMSMDQFIELCILLGCDYLEPCKGIGPKTALKLMREHGTLGKVVEHIRGK 267
Score = 107 bits (267), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 53/97 (54%), Positives = 69/97 (71%), Gaps = 8/97 (8%)
Query: 305 LVADVAPSSIRE-------SRKICIDASMSLYQFLIAVRS-EGNQLMSVDGEPTSHLMGT 356
L+++ AP +++ RK+ IDASMS+YQFLIAVR +G LM+ G+ TSHLMG
Sbjct: 9 LLSENAPKCMKDHEMKTLFGRKVAIDASMSIYQFLIAVRQQDGQMLMNESGDVTSHLMGF 68
Query: 357 FYRTIRLVEHGLKPIYVFDGKPPTLKSGELNKRMEKR 393
FYRTIR+V+HG+KP Y+FDGKPP LK L KR +R
Sbjct: 69 FYRTIRMVDHGIKPCYIFDGKPPELKGSVLAKRFARR 105
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 30/57 (52%), Positives = 41/57 (71%)
Query: 1 MTLKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSSTTQGRLDSFFTIRREE 57
+ L+W PD +GLV++LC DK F EDR+R GA KL K ++ QGRLD FFT++ +E
Sbjct: 364 LVLEWKQPDTEGLVEFLCRDKGFNEDRVRAGAAKLSKMLAAKQQGRLDGFFTVKPKE 420
Score = 68.9 bits (167), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 30/55 (54%), Positives = 39/55 (70%)
Query: 409 LKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSTTTQGRLDSFFTIRREE 463
L+W PD +GLV++LC DK F EDR+R GA KL K + QGRLD FFT++ +E
Sbjct: 366 LEWKQPDTEGLVEFLCRDKGFNEDRVRAGAAKLSKMLAAKQQGRLDGFFTVKPKE 420
Score = 58.5 bits (140), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 24/44 (54%), Positives = 36/44 (81%)
Query: 232 FIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTK 275
FI+LCILLGCDY + +GIGPK A++L++EH ++ K++E+I K
Sbjct: 224 FIELCILLGCDYLEPCKGIGPKTALKLMREHGTLGKVVEHIRGK 267
Score = 45.8 bits (107), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 18/29 (62%), Positives = 25/29 (86%)
Query: 201 EFIDLCILLGCDYCDSIRGIGPKRAIELL 229
+FI+LCILLGCDY + +GIGPK A++L+
Sbjct: 223 QFIELCILLGCDYLEPCKGIGPKTALKLM 251
>gi|265141450|gb|ACY74444.1| flap endonuclease [Carukia barnesi]
Length = 236
Score = 146 bits (368), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 72/110 (65%), Positives = 88/110 (80%), Gaps = 7/110 (6%)
Query: 305 LVADVAPSSIRES-------RKICIDASMSLYQFLIAVRSEGNQLMSVDGEPTSHLMGTF 357
L+AD A S++E+ RKI IDASMS+YQFLIAVRS+G+QL + +GE TSHLMG F
Sbjct: 9 LLADHASGSMKENEIKNYFGRKIAIDASMSIYQFLIAVRSDGSQLTNEEGETTSHLMGIF 68
Query: 358 YRTIRLVEHGLKPIYVFDGKPPTLKSGELNKRMEKREDAQKALAKAQEQG 407
YRTIR+VE+G+KP+YVFDGKPP +KSGEL KR E+RE+AQK L AQE G
Sbjct: 69 YRTIRMVENGIKPLYVFDGKPPEMKSGELTKRTERREEAQKQLEVAQETG 118
Score = 144 bits (364), Expect = 9e-32, Method: Compositional matrix adjust.
Identities = 63/83 (75%), Positives = 76/83 (91%)
Query: 60 KAPCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVL 119
+APCEAEAQCA +VK GKV+A ATEDMD LTFGSN++LRH+TFSEARK+P+QE+HL KVL
Sbjct: 154 EAPCEAEAQCAELVKGGKVFAAATEDMDCLTFGSNVMLRHLTFSEARKMPIQEYHLPKVL 213
Query: 120 EGMELSHEEFIDLCILLGCDYCD 142
+G+ LS +EFIDLCILLGCDYC+
Sbjct: 214 DGLGLSQDEFIDLCILLGCDYCE 236
Score = 39.3 bits (90), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 38/72 (52%), Gaps = 10/72 (13%)
Query: 154 ELIKEHRSIEKILENIDTKKY---TVPEGWLYKEAREL----FRHPEVADPETI---EFI 203
EL+K + E++D + + + EAR++ + P+V D + EFI
Sbjct: 165 ELVKGGKVFAAATEDMDCLTFGSNVMLRHLTFSEARKMPIQEYHLPKVLDGLGLSQDEFI 224
Query: 204 DLCILLGCDYCD 215
DLCILLGCDYC+
Sbjct: 225 DLCILLGCDYCE 236
>gi|347601761|gb|AEP16246.1| flap endonuclease 1 [Emiliania huxleyi virus 208]
Length = 358
Score = 146 bits (368), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 67/141 (47%), Positives = 97/141 (68%), Gaps = 6/141 (4%)
Query: 60 KAPCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVL 119
++PCEAEA CAA VK GK YATATEDMD+LTFGS ++RH+ ++ +K P E+ L +L
Sbjct: 152 QSPCEAEATCAAYVKTGKAYATATEDMDSLTFGSTYVIRHINSTDQKKQPTVEYSLPNIL 211
Query: 120 EGMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTK------K 173
M ++ ++FI++CIL GCDY +I+GIGP RA +LI+EH +IE +L+ + K
Sbjct: 212 NDMGITMDQFIEICILSGCDYTKTIKGIGPTRAYQLIQEHSTIENVLDVLKKKHGEEQFS 271
Query: 174 YTVPEGWLYKEARELFRHPEV 194
VP+ + + R+LF +PEV
Sbjct: 272 TMVPDDYPIEAVRDLFNNPEV 292
Score = 99.8 bits (247), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 49/82 (59%), Positives = 59/82 (71%), Gaps = 1/82 (1%)
Query: 320 ICIDASMSLYQFLIAVR-SEGNQLMSVDGEPTSHLMGTFYRTIRLVEHGLKPIYVFDGKP 378
I IDASM +YQ LIA+R QL + +GE TSHL G FYRTIRL+E G+KP+YVFDGKP
Sbjct: 31 IMIDASMQIYQCLIAIRQGPSGQLAASEGEVTSHLTGIFYRTIRLIEAGIKPVYVFDGKP 90
Query: 379 PTLKSGELNKRMEKREDAQKAL 400
P LK EL+KR E++ A L
Sbjct: 91 PVLKKKELDKRNERQAQALSEL 112
Score = 69.3 bits (168), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 31/72 (43%), Positives = 47/72 (65%), Gaps = 6/72 (8%)
Query: 232 FIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTK------KYTVPEGWLY 285
FI++CIL GCDY +I+GIGP RA +LI+EH +IE +L+ + K VP+ +
Sbjct: 221 FIEICILSGCDYTKTIKGIGPTRAYQLIQEHSTIENVLDVLKKKHGEEQFSTMVPDDYPI 280
Query: 286 KEARELFRHPEI 297
+ R+LF +PE+
Sbjct: 281 EAVRDLFNNPEV 292
Score = 47.0 bits (110), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 37/61 (60%), Gaps = 3/61 (4%)
Query: 3 LKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSSTTQGRLDSFFTIRRE---EKR 59
L W+ + D L+ +L +K F+ DR+ G ++L A++ TQ R++ FF +++ +KR
Sbjct: 298 LTWNTINRDALIAFLVEEKKFSADRVNKGCDRILAAKAKGTQHRINHFFKVKQTPVGQKR 357
Query: 60 K 60
K
Sbjct: 358 K 358
Score = 46.6 bits (109), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 38/62 (61%), Gaps = 3/62 (4%)
Query: 408 KLKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSTTTQGRLDSFFTIRRE---EK 464
+L W+ + D L+ +L +K F+ DR+ G ++L A++ TQ R++ FF +++ +K
Sbjct: 297 ELTWNTINRDALIAFLVEEKKFSADRVNKGCDRILAAKAKGTQHRINHFFKVKQTPVGQK 356
Query: 465 RK 466
RK
Sbjct: 357 RK 358
>gi|73852488|ref|YP_293772.1| putative endonuclease [Emiliania huxleyi virus 86]
gi|72415204|emb|CAI65441.1| putative endonuclease [Emiliania huxleyi virus 86]
gi|347481843|gb|AEO97829.1| flap endonuclease-1 [Emiliania huxleyi virus 84]
gi|347600467|gb|AEP14954.1| endonuclease [Emiliania huxleyi virus 88]
Length = 358
Score = 145 bits (367), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 67/141 (47%), Positives = 97/141 (68%), Gaps = 6/141 (4%)
Query: 60 KAPCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVL 119
+APCEAEA CAA VK GK YATATEDMD+LTFGS ++RH+ ++ +K P E+ L +L
Sbjct: 152 QAPCEAEATCAAYVKTGKAYATATEDMDSLTFGSTYVIRHINSTDQKKQPTVEYSLPNIL 211
Query: 120 EGMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTK------K 173
M ++ ++FI++CIL GCDY +I+GIGP RA +LI+EH +IE +L+ + K
Sbjct: 212 NDMGITMDQFIEICILSGCDYTKTIKGIGPTRAYQLIQEHSTIENVLDVLKKKHGEEQFS 271
Query: 174 YTVPEGWLYKEARELFRHPEV 194
VP+ + + R+LF +P+V
Sbjct: 272 TMVPDDYPIEAVRDLFNNPDV 292
Score = 99.0 bits (245), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 49/82 (59%), Positives = 59/82 (71%), Gaps = 1/82 (1%)
Query: 320 ICIDASMSLYQFLIAVR-SEGNQLMSVDGEPTSHLMGTFYRTIRLVEHGLKPIYVFDGKP 378
I IDASM +YQ LIA+R QL + +GE TSHL G FYRTIRL+E G+KP+YVFDGKP
Sbjct: 31 IMIDASMQIYQCLIAIRQGPSGQLAACEGEVTSHLTGIFYRTIRLIEAGIKPVYVFDGKP 90
Query: 379 PTLKSGELNKRMEKREDAQKAL 400
P LK EL+KR E++ A L
Sbjct: 91 PVLKKKELDKRNERQAQALSEL 112
Score = 68.2 bits (165), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 30/72 (41%), Positives = 47/72 (65%), Gaps = 6/72 (8%)
Query: 232 FIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTK------KYTVPEGWLY 285
FI++CIL GCDY +I+GIGP RA +LI+EH +IE +L+ + K VP+ +
Sbjct: 221 FIEICILSGCDYTKTIKGIGPTRAYQLIQEHSTIENVLDVLKKKHGEEQFSTMVPDDYPI 280
Query: 286 KEARELFRHPEI 297
+ R+LF +P++
Sbjct: 281 EAVRDLFNNPDV 292
Score = 47.0 bits (110), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 37/61 (60%), Gaps = 3/61 (4%)
Query: 3 LKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSSTTQGRLDSFFTIRRE---EKR 59
L W+ + D L+ +L +K F+ DR+ G ++L A++ TQ R++ FF +++ +KR
Sbjct: 298 LTWNTINRDALIAFLVEEKKFSADRVNKGCDRILAAKAKGTQHRINHFFKVKQTPVGQKR 357
Query: 60 K 60
K
Sbjct: 358 K 358
Score = 46.6 bits (109), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 38/62 (61%), Gaps = 3/62 (4%)
Query: 408 KLKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSTTTQGRLDSFFTIRRE---EK 464
+L W+ + D L+ +L +K F+ DR+ G ++L A++ TQ R++ FF +++ +K
Sbjct: 297 ELTWNTINRDALIAFLVEEKKFSADRVNKGCDRILAAKAKGTQHRINHFFKVKQTPVGQK 356
Query: 465 RK 466
RK
Sbjct: 357 RK 358
>gi|347482295|gb|AEO98236.1| flap endonuclease-1 [Emiliania huxleyi virus 203]
gi|347601360|gb|AEP15846.1| flap structure-specific endonuclease 1 [Emiliania huxleyi virus
207]
gi|357972633|gb|AET97906.1| flap endonuclease-1 [Emiliania huxleyi virus 201]
Length = 358
Score = 145 bits (367), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 68/141 (48%), Positives = 96/141 (68%), Gaps = 6/141 (4%)
Query: 60 KAPCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVL 119
+APCEAEA CAA VK GK YATATEDMD+LTFGS ++RH+ ++ +K P E+ L +L
Sbjct: 152 QAPCEAEATCAAYVKTGKAYATATEDMDSLTFGSTYVIRHINSTDQKKQPTVEYSLPNIL 211
Query: 120 EGMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTK------K 173
M ++ ++FI++CIL GCDY +I+GIGP RA +LI+EH +IE +L + K
Sbjct: 212 NDMGITMDQFIEICILSGCDYTKTIKGIGPTRAYQLIQEHSTIENVLGVLKKKHGEEQFS 271
Query: 174 YTVPEGWLYKEARELFRHPEV 194
VP+ + + R+LF +PEV
Sbjct: 272 TMVPDDYPIEAVRDLFNNPEV 292
Score = 99.4 bits (246), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 49/82 (59%), Positives = 59/82 (71%), Gaps = 1/82 (1%)
Query: 320 ICIDASMSLYQFLIAVR-SEGNQLMSVDGEPTSHLMGTFYRTIRLVEHGLKPIYVFDGKP 378
I IDASM +YQ LIA+R QL + +GE TSHL G FYRTIRL+E G+KP+YVFDGKP
Sbjct: 31 IMIDASMQIYQCLIAIRQGPSGQLAASEGEVTSHLTGIFYRTIRLIEAGIKPVYVFDGKP 90
Query: 379 PTLKSGELNKRMEKREDAQKAL 400
P LK EL+KR E++ A L
Sbjct: 91 PVLKKKELDKRNERQAQALSEL 112
Score = 68.2 bits (165), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 31/72 (43%), Positives = 46/72 (63%), Gaps = 6/72 (8%)
Query: 232 FIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTK------KYTVPEGWLY 285
FI++CIL GCDY +I+GIGP RA +LI+EH +IE +L + K VP+ +
Sbjct: 221 FIEICILSGCDYTKTIKGIGPTRAYQLIQEHSTIENVLGVLKKKHGEEQFSTMVPDDYPI 280
Query: 286 KEARELFRHPEI 297
+ R+LF +PE+
Sbjct: 281 EAVRDLFNNPEV 292
Score = 47.0 bits (110), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 37/61 (60%), Gaps = 3/61 (4%)
Query: 3 LKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSSTTQGRLDSFFTIRRE---EKR 59
L W+ + D L+ +L +K F+ DR+ G ++L A++ TQ R++ FF +++ +KR
Sbjct: 298 LTWNTINRDALIAFLVEEKKFSADRVNKGCDRILAAKAKGTQHRINHFFKVKQTPVGQKR 357
Query: 60 K 60
K
Sbjct: 358 K 358
Score = 47.0 bits (110), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 37/61 (60%), Gaps = 3/61 (4%)
Query: 409 LKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSTTTQGRLDSFFTIRRE---EKR 465
L W+ + D L+ +L +K F+ DR+ G ++L A++ TQ R++ FF +++ +KR
Sbjct: 298 LTWNTINRDALIAFLVEEKKFSADRVNKGCDRILAAKAKGTQHRINHFFKVKQTPVGQKR 357
Query: 466 K 466
K
Sbjct: 358 K 358
>gi|340501530|gb|EGR28305.1| hypothetical protein IMG5_178850 [Ichthyophthirius multifiliis]
Length = 322
Score = 145 bits (366), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 69/143 (48%), Positives = 100/143 (69%), Gaps = 5/143 (3%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVLE 120
AP EAEAQCAA+ K G+V+AT TEDMDALTFG+ ILLR + ++K P+ E + ++L+
Sbjct: 135 APGEAEAQCAALTKTGQVFATVTEDMDALTFGTTILLRGLN---SKKEPIVEINHYQMLK 191
Query: 121 GMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTK--KYTVPE 178
+E S +FIDLCIL GCDY + I GIGP A +LIKE +++E + I+ K ++ +P+
Sbjct: 192 ELEFSENQFIDLCILCGCDYLEKIEGIGPVNAYKLIKEFKNLENTINFIEKKQNRFIIPK 251
Query: 179 GWLYKEARELFRHPEVADPETIE 201
+ ++E R LF+ PE+ + E IE
Sbjct: 252 NYNFQEVRNLFQKPEIENVEKIE 274
Score = 77.8 bits (190), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 35/76 (46%), Positives = 52/76 (68%), Gaps = 2/76 (2%)
Query: 232 FIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTK--KYTVPEGWLYKEAR 289
FIDLCIL GCDY + I GIGP A +LIKE +++E + I+ K ++ +P+ + ++E R
Sbjct: 200 FIDLCILCGCDYLEKIEGIGPVNAYKLIKEFKNLENTINFIEKKQNRFIIPKNYNFQEVR 259
Query: 290 ELFRHPEIADPETIEL 305
LF+ PEI + E IE+
Sbjct: 260 NLFQKPEIENVEKIEI 275
>gi|83286314|ref|XP_730108.1| Flap endonuclease-1 [Plasmodium yoelii yoelii 17XNL]
gi|74882336|sp|Q7RME3.1|FEN1_PLAYO RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|23489735|gb|EAA21673.1| flap endonuclease-1-related [Plasmodium yoelii yoelii]
Length = 480
Score = 145 bits (366), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 75/157 (47%), Positives = 104/157 (66%), Gaps = 12/157 (7%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEA-----------RKLP 109
+PCEAEAQCA + K +ATATED DAL FG+ IL+R++ + + R
Sbjct: 157 SPCEAEAQCAFLTKYEMAHATATEDADALVFGTKILIRNLNANASSNKNKNKNSSKRGYI 216
Query: 110 VQEFHLEKVLEGMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENI 169
+ E +LE+VL+G++L+ +EFID CIL GCDYCD+I+GIG K A LIKE+ IE I++NI
Sbjct: 217 LTEINLEQVLKGLKLTMDEFIDFCILCGCDYCDTIKGIGSKTAYNLIKEYNCIENIIKNI 276
Query: 170 DTKKYTVPEGWLYKEARELFRHPEVADPETIEFIDLC 206
D KY VP + Y EAR+ F +P+V + ++ ID C
Sbjct: 277 DQNKYQVPANFKYVEARQSFINPKVLEKSEVK-IDWC 312
Score = 121 bits (303), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 62/116 (53%), Positives = 82/116 (70%), Gaps = 11/116 (9%)
Query: 304 ELVADVAPSSIRE-------SRKICIDASMSLYQFLIAVRSEGNQ---LMSVDGEPTSHL 353
+ +AD AP++I+E R + IDASMSLYQF+IA+R +G+Q LM+ GE TSH+
Sbjct: 8 KFIADTAPNAIKEIKIENLMGRVVAIDASMSLYQFIIAIR-DGDQYGNLMNESGETTSHI 66
Query: 354 MGTFYRTIRLVEHGLKPIYVFDGKPPTLKSGELNKRMEKREDAQKALAKAQEQGKL 409
G RTI+L+E+GLKPIYVFDG PP LK EL KR EKR+ A++ L KA+ +G L
Sbjct: 67 SGLMSRTIKLMENGLKPIYVFDGAPPELKGSELEKRGEKRQKAEELLIKAKAEGNL 122
Score = 85.5 bits (210), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 38/74 (51%), Positives = 52/74 (70%)
Query: 232 FIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGWLYKEAREL 291
FID CIL GCDYCD+I+GIG K A LIKE+ IE I++NID KY VP + Y EAR+
Sbjct: 236 FIDFCILCGCDYCDTIKGIGSKTAYNLIKEYNCIENIIKNIDQNKYQVPANFKYVEARQS 295
Query: 292 FRHPEIADPETIEL 305
F +P++ + +++
Sbjct: 296 FINPKVLEKSEVKI 309
Score = 50.1 bits (118), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/51 (47%), Positives = 32/51 (62%)
Query: 408 KLKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSTTTQGRLDSFFT 458
K+ W +P + L +L + NF E R+ N +LLKAR TTQ RLD+FFT
Sbjct: 308 KIDWCEPKIEELKTFLIKEHNFNEVRVTNYITRLLKARKVTTQRRLDTFFT 358
Score = 48.1 bits (113), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 23/50 (46%), Positives = 31/50 (62%)
Query: 3 LKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSSTTQGRLDSFFT 52
+ W +P + L +L + NF E R+ N +LLKAR TTQ RLD+FFT
Sbjct: 309 IDWCEPKIEELKTFLIKEHNFNEVRVTNYITRLLKARKVTTQRRLDTFFT 358
>gi|321257144|ref|XP_003193485.1| flap endonuclease [Cryptococcus gattii WM276]
gi|317459955|gb|ADV21698.1| flap endonuclease, putative [Cryptococcus gattii WM276]
Length = 453
Score = 145 bits (365), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 65/112 (58%), Positives = 89/112 (79%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVLE 120
AP EAEAQCA + +AGKVYA +EDMD LTF S ILLRH+TFSEA+K+P+ E HL+ L
Sbjct: 156 APGEAEAQCAELARAGKVYAAGSEDMDTLTFHSPILLRHLTFSEAKKMPISEIHLDVALR 215
Query: 121 GMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTK 172
+E+S ++FI+LCILLGCDY + +GIGPK A++L++EH ++ K++E+I K
Sbjct: 216 DLEMSMDQFIELCILLGCDYLEPCKGIGPKTALKLMREHGTLGKVVEHIRGK 267
Score = 107 bits (267), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 53/97 (54%), Positives = 69/97 (71%), Gaps = 8/97 (8%)
Query: 305 LVADVAPSSIRE-------SRKICIDASMSLYQFLIAVRS-EGNQLMSVDGEPTSHLMGT 356
L+++ AP +++ RK+ IDASMS+YQFLIAVR +G LM+ G+ TSHLMG
Sbjct: 9 LLSENAPKCMKDHEMKTLFGRKVAIDASMSIYQFLIAVRQQDGQMLMNESGDVTSHLMGF 68
Query: 357 FYRTIRLVEHGLKPIYVFDGKPPTLKSGELNKRMEKR 393
FYRTIR+V+HG+KP Y+FDGKPP LK L KR +R
Sbjct: 69 FYRTIRMVDHGIKPCYIFDGKPPELKGSVLAKRFARR 105
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 30/57 (52%), Positives = 41/57 (71%)
Query: 1 MTLKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSSTTQGRLDSFFTIRREE 57
+ L+W PD +GLV++LC DK F EDR+R GA KL K ++ QGRLD FFT++ +E
Sbjct: 364 LVLEWKQPDTEGLVEFLCRDKGFNEDRVRAGAAKLSKMLAAKQQGRLDGFFTVKPKE 420
Score = 68.9 bits (167), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 30/55 (54%), Positives = 39/55 (70%)
Query: 409 LKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSTTTQGRLDSFFTIRREE 463
L+W PD +GLV++LC DK F EDR+R GA KL K + QGRLD FFT++ +E
Sbjct: 366 LEWKQPDTEGLVEFLCRDKGFNEDRVRAGAAKLSKMLAAKQQGRLDGFFTVKPKE 420
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 24/44 (54%), Positives = 36/44 (81%)
Query: 232 FIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTK 275
FI+LCILLGCDY + +GIGPK A++L++EH ++ K++E+I K
Sbjct: 224 FIELCILLGCDYLEPCKGIGPKTALKLMREHGTLGKVVEHIRGK 267
Score = 45.8 bits (107), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 18/29 (62%), Positives = 25/29 (86%)
Query: 201 EFIDLCILLGCDYCDSIRGIGPKRAIELL 229
+FI+LCILLGCDY + +GIGPK A++L+
Sbjct: 223 QFIELCILLGCDYLEPCKGIGPKTALKLM 251
>gi|405120385|gb|AFR95156.1| flap endonuclease [Cryptococcus neoformans var. grubii H99]
Length = 453
Score = 145 bits (365), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 64/112 (57%), Positives = 89/112 (79%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVLE 120
AP EAEAQCA + +AGKVYA +EDMD LTF S ILLRH+TFSEA+++P+ E HL+ L
Sbjct: 156 APGEAEAQCAELARAGKVYAAGSEDMDTLTFNSPILLRHLTFSEAKRMPISEIHLDVALR 215
Query: 121 GMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTK 172
+E+S ++FI+LCILLGCDY + +GIGPK A++L++EH ++ K++E+I K
Sbjct: 216 DLEMSMDQFIELCILLGCDYLEPCKGIGPKTALKLMREHGTLGKVVEHIRGK 267
Score = 107 bits (267), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 53/97 (54%), Positives = 69/97 (71%), Gaps = 8/97 (8%)
Query: 305 LVADVAPSSIRE-------SRKICIDASMSLYQFLIAVRS-EGNQLMSVDGEPTSHLMGT 356
L+++ AP +++ RK+ IDASMS+YQFLIAVR +G LM+ G+ TSHLMG
Sbjct: 9 LLSENAPKCMKDHEMKTLFGRKVAIDASMSIYQFLIAVRQQDGQMLMNESGDVTSHLMGF 68
Query: 357 FYRTIRLVEHGLKPIYVFDGKPPTLKSGELNKRMEKR 393
FYRTIR+V+HG+KP Y+FDGKPP LK L KR +R
Sbjct: 69 FYRTIRMVDHGIKPCYIFDGKPPELKGSVLAKRFARR 105
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 30/57 (52%), Positives = 41/57 (71%)
Query: 1 MTLKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSSTTQGRLDSFFTIRREE 57
+ L+W PD +GLV++LC DK F EDR+R GA KL K ++ QGRLD FFT++ +E
Sbjct: 364 LVLEWKQPDTEGLVEFLCRDKGFNEDRVRAGAAKLSKMLAAKQQGRLDGFFTVKPKE 420
Score = 68.9 bits (167), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 30/55 (54%), Positives = 39/55 (70%)
Query: 409 LKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSTTTQGRLDSFFTIRREE 463
L+W PD +GLV++LC DK F EDR+R GA KL K + QGRLD FFT++ +E
Sbjct: 366 LEWKQPDTEGLVEFLCRDKGFNEDRVRAGAAKLSKMLAAKQQGRLDGFFTVKPKE 420
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 24/44 (54%), Positives = 36/44 (81%)
Query: 232 FIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTK 275
FI+LCILLGCDY + +GIGPK A++L++EH ++ K++E+I K
Sbjct: 224 FIELCILLGCDYLEPCKGIGPKTALKLMREHGTLGKVVEHIRGK 267
>gi|384245741|gb|EIE19234.1| PIN domain-like protein [Coccomyxa subellipsoidea C-169]
Length = 384
Score = 144 bits (364), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 62/134 (46%), Positives = 99/134 (73%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVLE 120
AP EAEAQCA M K G VY A+EDMD+LTF + L+R++ + + +P+ E+ +KVLE
Sbjct: 156 APSEAEAQCAQMCKEGLVYGIASEDMDSLTFATPKLIRNLMKPQTQNVPINEYDYDKVLE 215
Query: 121 GMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGW 180
G+ L+ ++F+DLCIL GCDYC +I+GIG A++LI++H+ +E +L +++ +Y +P+ +
Sbjct: 216 GLNLTSDQFVDLCILCGCDYCGTIKGIGGVTALKLIQKHKRLEDVLASMEGGRYEIPDPF 275
Query: 181 LYKEARELFRHPEV 194
++EAR LF+ P+V
Sbjct: 276 PFEEARRLFKEPDV 289
Score = 107 bits (268), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 54/112 (48%), Positives = 75/112 (66%), Gaps = 8/112 (7%)
Query: 304 ELVADVAPSSIRE-------SRKICIDASMSLYQFLIAVRSEGNQ-LMSVDGEPTSHLMG 355
+L+ D AP +E RK+ +DASM +YQFL+ V G+Q L S G+ TSHL G
Sbjct: 8 KLLGDHAPGCCKEQKVENYFGRKVAVDASMHIYQFLVVVGRTGDQTLTSESGDVTSHLQG 67
Query: 356 TFYRTIRLVEHGLKPIYVFDGKPPTLKSGELNKRMEKREDAQKALAKAQEQG 407
F+RT +++E G+KP+YVFDGKPP LK EL++R+E+R DA L +A+E G
Sbjct: 68 MFFRTAKMLEVGMKPVYVFDGKPPALKKEELSRRVERRGDATDLLTEAKETG 119
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 29/66 (43%), Positives = 51/66 (77%)
Query: 232 FIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGWLYKEAREL 291
F+DLCIL GCDYC +I+GIG A++LI++H+ +E +L +++ +Y +P+ + ++EAR L
Sbjct: 224 FVDLCILCGCDYCGTIKGIGGVTALKLIQKHKRLEDVLASMEGGRYEIPDPFPFEEARRL 283
Query: 292 FRHPEI 297
F+ P++
Sbjct: 284 FKEPDV 289
Score = 68.6 bits (166), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 34/78 (43%), Positives = 51/78 (65%), Gaps = 5/78 (6%)
Query: 3 LKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSSTTQGRLDSFF---TIRREE-- 57
LKW+ DE+GLV++L GDK+F EDR+R +++ A+S +TQGRL+SFF +I+ +
Sbjct: 298 LKWTTADEEGLVQFLVGDKSFNEDRVRKAVQRVNAAKSKSTQGRLESFFGPVSIKTSDTG 357
Query: 58 KRKAPCEAEAQCAAMVKA 75
KRK P + + A K
Sbjct: 358 KRKEPATGKGKGQAAKKG 375
Score = 66.2 bits (160), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 32/70 (45%), Positives = 47/70 (67%), Gaps = 4/70 (5%)
Query: 388 KRMEKREDAQKALAKAQEQGKLKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARST 447
+R+ K D K + Q LKW+ DE+GLV++L GDK+F EDR+R +++ A+S
Sbjct: 281 RRLFKEPDVLKGDSMPQ----LKWTTADEEGLVQFLVGDKSFNEDRVRKAVQRVNAAKSK 336
Query: 448 TTQGRLDSFF 457
+TQGRL+SFF
Sbjct: 337 STQGRLESFF 346
>gi|283481241|emb|CAZ69357.1| putative endonuclease [Emiliania huxleyi virus 99B1]
Length = 358
Score = 144 bits (364), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 67/141 (47%), Positives = 97/141 (68%), Gaps = 6/141 (4%)
Query: 60 KAPCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVL 119
+APCEAEA CAA VK GK YATATEDMD+LTFGS ++RH+ ++ +K P E+ L +L
Sbjct: 152 QAPCEAEATCAAYVKTGKAYATATEDMDSLTFGSTYVIRHINSTDQKKQPTVEYSLPNIL 211
Query: 120 EGMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTK------K 173
M ++ ++FI++CIL GCDY +I+GIGP RA +LI+EH +IE +L+ + K
Sbjct: 212 NDMGITMDQFIEICILSGCDYTKTIKGIGPTRAYQLIQEHSTIEIVLDVLKKKHGEAQFS 271
Query: 174 YTVPEGWLYKEARELFRHPEV 194
VP+ + + R+LF +P+V
Sbjct: 272 TMVPDDYPIEAVRDLFNNPDV 292
Score = 99.4 bits (246), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 49/82 (59%), Positives = 59/82 (71%), Gaps = 1/82 (1%)
Query: 320 ICIDASMSLYQFLIAVR-SEGNQLMSVDGEPTSHLMGTFYRTIRLVEHGLKPIYVFDGKP 378
I IDASM +YQ LIA+R QL + +GE TSHL G FYRTIRL+E G+KP+YVFDGKP
Sbjct: 31 IMIDASMQIYQCLIAIRQGPSGQLAASEGEVTSHLTGIFYRTIRLIEAGIKPVYVFDGKP 90
Query: 379 PTLKSGELNKRMEKREDAQKAL 400
P LK EL+KR E++ A L
Sbjct: 91 PVLKKKELDKRNERQAHALSEL 112
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 30/72 (41%), Positives = 47/72 (65%), Gaps = 6/72 (8%)
Query: 232 FIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTK------KYTVPEGWLY 285
FI++CIL GCDY +I+GIGP RA +LI+EH +IE +L+ + K VP+ +
Sbjct: 221 FIEICILSGCDYTKTIKGIGPTRAYQLIQEHSTIEIVLDVLKKKHGEAQFSTMVPDDYPI 280
Query: 286 KEARELFRHPEI 297
+ R+LF +P++
Sbjct: 281 EAVRDLFNNPDV 292
Score = 48.9 bits (115), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 37/61 (60%), Gaps = 3/61 (4%)
Query: 3 LKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSSTTQGRLDSFFTIRRE---EKR 59
L W+ + D L+ +L DK F+ DR+ G ++L A++ TQ R++ FF +++ +KR
Sbjct: 298 LTWNTINRDALIAFLVEDKKFSADRVNKGCDRILAAKAKGTQHRINHFFKVKQTPVGQKR 357
Query: 60 K 60
K
Sbjct: 358 K 358
Score = 48.5 bits (114), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 37/61 (60%), Gaps = 3/61 (4%)
Query: 409 LKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSTTTQGRLDSFFTIRRE---EKR 465
L W+ + D L+ +L DK F+ DR+ G ++L A++ TQ R++ FF +++ +KR
Sbjct: 298 LTWNTINRDALIAFLVEDKKFSADRVNKGCDRILAAKAKGTQHRINHFFKVKQTPVGQKR 357
Query: 466 K 466
K
Sbjct: 358 K 358
>gi|68074223|ref|XP_679026.1| flap exonuclease [Plasmodium berghei strain ANKA]
gi|74991237|sp|Q4Z015.1|FEN1_PLABA RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|56499663|emb|CAH96377.1| flap exonuclease, putative [Plasmodium berghei]
Length = 478
Score = 144 bits (364), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 75/157 (47%), Positives = 103/157 (65%), Gaps = 12/157 (7%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEA-----------RKLP 109
+PCEAEAQCA + K +ATATED DAL FG+ IL+R++ + + R
Sbjct: 156 SPCEAEAQCAFLTKYEMAHATATEDADALVFGTKILIRNLNANASSNKNKNKNSSKRGYI 215
Query: 110 VQEFHLEKVLEGMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENI 169
+ E +LE+VL+G++L+ +EFID CIL GCDYCD+I+GIG K A LIKE+ IE I++NI
Sbjct: 216 LTEINLEQVLKGLKLTMDEFIDFCILCGCDYCDTIKGIGSKTAYNLIKEYNCIENIIKNI 275
Query: 170 DTKKYTVPEGWLYKEARELFRHPEVADPETIEFIDLC 206
D KY VP + Y EAR+ F P+V + ++ ID C
Sbjct: 276 DQNKYQVPANFKYVEARQSFIKPKVLEKSEVK-IDWC 311
Score = 119 bits (298), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 61/114 (53%), Positives = 81/114 (71%), Gaps = 11/114 (9%)
Query: 304 ELVADVAPSSIRE-------SRKICIDASMSLYQFLIAVRSEGNQ---LMSVDGEPTSHL 353
+ +AD AP++I+E R + IDASMSLYQF+IA+R +G+Q LM+ GE TSH+
Sbjct: 8 KFIADTAPNAIKEIKIENLMGRVVAIDASMSLYQFIIAIR-DGDQYGNLMNESGETTSHI 66
Query: 354 MGTFYRTIRLVEHGLKPIYVFDGKPPTLKSGELNKRMEKREDAQKALAKAQEQG 407
G RTI+L+E+GLKPIYVFDG PP LK EL KR EKR+ A++ L KA+E+
Sbjct: 67 SGLMSRTIKLMENGLKPIYVFDGAPPELKGSELEKRGEKRQKAEELLIKAKEEN 120
Score = 84.3 bits (207), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 38/74 (51%), Positives = 51/74 (68%)
Query: 232 FIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGWLYKEAREL 291
FID CIL GCDYCD+I+GIG K A LIKE+ IE I++NID KY VP + Y EAR+
Sbjct: 235 FIDFCILCGCDYCDTIKGIGSKTAYNLIKEYNCIENIIKNIDQNKYQVPANFKYVEARQS 294
Query: 292 FRHPEIADPETIEL 305
F P++ + +++
Sbjct: 295 FIKPKVLEKSEVKI 308
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/71 (40%), Positives = 41/71 (57%)
Query: 388 KRMEKREDAQKALAKAQEQGKLKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARST 447
K +E R+ K + + K+ W +P + L K+L + NF E R+ N +LLKAR
Sbjct: 287 KYVEARQSFIKPKVLEKSEVKIDWCEPKIEELKKFLIKEHNFNEVRVTNYITRLLKARKV 346
Query: 448 TTQGRLDSFFT 458
TTQ RLD+FFT
Sbjct: 347 TTQRRLDTFFT 357
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/50 (48%), Positives = 32/50 (64%)
Query: 3 LKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSSTTQGRLDSFFT 52
+ W +P + L K+L + NF E R+ N +LLKAR TTQ RLD+FFT
Sbjct: 308 IDWCEPKIEELKKFLIKEHNFNEVRVTNYITRLLKARKVTTQRRLDTFFT 357
>gi|145514173|ref|XP_001442997.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124467070|sp|A0CXT3.1|FEN11_PARTE RecName: Full=Flap endonuclease 1-1; Short=FEN-1-1; AltName:
Full=Flap structure-specific endonuclease 1-1
gi|124410358|emb|CAK75600.1| unnamed protein product [Paramecium tetraurelia]
Length = 390
Score = 144 bits (363), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 75/153 (49%), Positives = 102/153 (66%), Gaps = 14/153 (9%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVLE 120
APCEAEAQCA + +AGK+YATATEDMDALTF + +LLR +K P+ E + +++
Sbjct: 159 APCEAEAQCAELCRAGKIYATATEDMDALTFRTPVLLRGFN---TKKEPIYEIIYDDMMK 215
Query: 121 GMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENI----------- 169
+E+++E+F+DLCIL GCDY + I GIGP A +LIKE +SIE ILE++
Sbjct: 216 ELEITYEQFVDLCILCGCDYTEKIEGIGPGTAYKLIKEFKSIEGILEHVQKVNAEREKNK 275
Query: 170 DTKKYTVPEGWLYKEARELFRHPEVADPETIEF 202
KYTVP +LY+++RELF P V E I+
Sbjct: 276 QNPKYTVPTKFLYQDSRELFITPLVQKGEEIQL 308
Score = 96.7 bits (239), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 51/119 (42%), Positives = 74/119 (62%), Gaps = 11/119 (9%)
Query: 303 IELVADVAPSSIRE-------SRKICIDASMSLYQFLIAVRSEGN----QLMSVDGEPTS 351
++ + + AP+ R R I DASM++YQFLI +S G +L DG T
Sbjct: 7 MQFLKEKAPNCFRTLMLDYFAGRTIGCDASMAMYQFLIQTQSAGQTQIIELTDKDGNRTG 66
Query: 352 HLMGTFYRTIRLVEHGLKPIYVFDGKPPTLKSGELNKRMEKREDAQKALAKAQEQGKLK 410
HL+G F RT++ +E+G+KP++VFDGKPP LKSGEL +R + +E+AQ A EQG ++
Sbjct: 67 HLVGLFNRTLQFLENGIKPVWVFDGKPPLLKSGELARRKKLKEEAQVKTELALEQGDMQ 125
Score = 79.7 bits (195), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 43/95 (45%), Positives = 58/95 (61%), Gaps = 12/95 (12%)
Query: 224 RAIELLYS-FIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENI---------- 272
+ +E+ Y F+DLCIL GCDY + I GIGP A +LIKE +SIE ILE++
Sbjct: 215 KELEITYEQFVDLCILCGCDYTEKIEGIGPGTAYKLIKEFKSIEGILEHVQKVNAEREKN 274
Query: 273 -DTKKYTVPEGWLYKEARELFRHPEIADPETIELV 306
KYTVP +LY+++RELF P + E I+L
Sbjct: 275 KQNPKYTVPTKFLYQDSRELFITPLVQKGEEIQLT 309
Score = 54.3 bits (129), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/67 (40%), Positives = 40/67 (59%)
Query: 391 EKREDAQKALAKAQEQGKLKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSTTTQ 450
+ RE L + E+ +L W+ PD + L K+L +K FAE RI NG K++ K +T Q
Sbjct: 290 DSRELFITPLVQKGEEIQLTWNKPDVENLKKFLVEEKGFAESRIDNGLKRIAKKDTTGFQ 349
Query: 451 GRLDSFF 457
RL++FF
Sbjct: 350 SRLENFF 356
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/49 (44%), Positives = 32/49 (65%)
Query: 3 LKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSSTTQGRLDSFF 51
L W+ PD + L K+L +K FAE RI NG K++ K ++ Q RL++FF
Sbjct: 308 LTWNKPDVENLKKFLVEEKGFAESRIDNGLKRIAKKDTTGFQSRLENFF 356
>gi|145514642|ref|XP_001443226.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124447858|sp|A0CYG2.1|FEN12_PARTE RecName: Full=Flap endonuclease 1-2; Short=FEN-1-2; AltName:
Full=Flap structure-specific endonuclease 1-2
gi|124410604|emb|CAK75829.1| unnamed protein product [Paramecium tetraurelia]
Length = 390
Score = 144 bits (362), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 74/145 (51%), Positives = 100/145 (68%), Gaps = 14/145 (9%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVLE 120
APCEAEAQCA + +AGK+YATATEDMDALTF + +LLR +K P+ E + +++
Sbjct: 159 APCEAEAQCAELCRAGKIYATATEDMDALTFRTPVLLRGFN---TKKEPIYEIIYDDMIK 215
Query: 121 GMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENI----------- 169
+EL++E+F+DLCIL GCDY + I GIGP A +LIKE++SIE ILE++
Sbjct: 216 ELELTYEQFVDLCILCGCDYTEKIEGIGPGTAYKLIKEYKSIEGILEHVQKVNAEREKNN 275
Query: 170 DTKKYTVPEGWLYKEARELFRHPEV 194
KYTVP +LY+++RELF P V
Sbjct: 276 QNPKYTVPSKFLYQDSRELFITPLV 300
Score = 92.0 bits (227), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 46/98 (46%), Positives = 66/98 (67%), Gaps = 4/98 (4%)
Query: 317 SRKICIDASMSLYQFLIAVRSEG----NQLMSVDGEPTSHLMGTFYRTIRLVEHGLKPIY 372
R I DASM++YQFLI +S G +L +G T HL+G F RT++ +E+G+KP++
Sbjct: 28 GRTIGCDASMAMYQFLIQTQSAGLTQIIELTDKEGNRTGHLVGLFNRTLQFLENGIKPVW 87
Query: 373 VFDGKPPTLKSGELNKRMEKREDAQKALAKAQEQGKLK 410
VFDGKPP LKSGEL +R + +E+A+ A EQG ++
Sbjct: 88 VFDGKPPLLKSGELARRKKLKEEAKVKTELALEQGDMQ 125
Score = 79.3 bits (194), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 42/95 (44%), Positives = 59/95 (62%), Gaps = 12/95 (12%)
Query: 224 RAIELLYS-FIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENI---------- 272
+ +EL Y F+DLCIL GCDY + I GIGP A +LIKE++SIE ILE++
Sbjct: 215 KELELTYEQFVDLCILCGCDYTEKIEGIGPGTAYKLIKEYKSIEGILEHVQKVNAEREKN 274
Query: 273 -DTKKYTVPEGWLYKEARELFRHPEIADPETIELV 306
KYTVP +LY+++RELF P + + ++L
Sbjct: 275 NQNPKYTVPSKFLYQDSRELFITPLVQKGDELQLT 309
Score = 51.6 bits (122), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 38/67 (56%)
Query: 391 EKREDAQKALAKAQEQGKLKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSTTTQ 450
+ RE L + ++ +L W+ PD D L K+L +K FAE RI NG K++ K Q
Sbjct: 290 DSRELFITPLVQKGDELQLTWNKPDVDNLKKFLIEEKGFAESRIDNGLKRIAKKDPAGFQ 349
Query: 451 GRLDSFF 457
RL++FF
Sbjct: 350 SRLENFF 356
Score = 51.6 bits (122), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/51 (45%), Positives = 32/51 (62%)
Query: 1 MTLKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSSTTQGRLDSFF 51
+ L W+ PD D L K+L +K FAE RI NG K++ K + Q RL++FF
Sbjct: 306 LQLTWNKPDVDNLKKFLIEEKGFAESRIDNGLKRIAKKDPAGFQSRLENFF 356
>gi|303388735|ref|XP_003072601.1| flap endonuclease-1 [Encephalitozoon intestinalis ATCC 50506]
gi|303301742|gb|ADM11241.1| flap endonuclease-1 [Encephalitozoon intestinalis ATCC 50506]
Length = 345
Score = 144 bits (362), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 77/137 (56%), Positives = 104/137 (75%), Gaps = 4/137 (2%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVLE 120
AP EAEA CA + K VY ATEDMDALTFGS ++LR+ + S++RKLP+ E++L ++LE
Sbjct: 154 APSEAEAYCAFLCKKKAVYGVATEDMDALTFGSPVVLRNFSGSQSRKLPIVEYNLPELLE 213
Query: 121 GMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGW 180
+ L HEEFIDLCILLGCDYC +++GIGPKRA+ LIK+H IEKIL+ ++ VP+GW
Sbjct: 214 SLSLEHEEFIDLCILLGCDYCGTLKGIGPKRALGLIKKHGGIEKILQ---SENLEVPDGW 270
Query: 181 LYKEARELFRH-PEVAD 196
Y++A+ +F PE+ D
Sbjct: 271 RYRDAQRIFGSLPEIGD 287
Score = 111 bits (278), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 56/97 (57%), Positives = 70/97 (72%), Gaps = 1/97 (1%)
Query: 311 PSSIRESRKICIDASMSLYQFLIAVRSEGNQLMSVDGEPTSHLMGTFYRTIRLVEHGLKP 370
P + S++I IDASMS+YQFLIAVRS+G+ L + D PTSHL+G FYRTIR+VE G+ P
Sbjct: 22 PLAYYSSKRIAIDASMSMYQFLIAVRSDGSSLGNED-SPTSHLVGFFYRTIRMVELGIIP 80
Query: 371 IYVFDGKPPTLKSGELNKRMEKREDAQKALAKAQEQG 407
+YVFDG PP +K EL KR E+R A K +A E G
Sbjct: 81 VYVFDGVPPEVKMKELEKRSERRAAADKEYKEASEMG 117
Score = 86.3 bits (212), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 40/69 (57%), Positives = 53/69 (76%), Gaps = 4/69 (5%)
Query: 232 FIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGWLYKEAREL 291
FIDLCILLGCDYC +++GIGPKRA+ LIK+H IEKIL+ ++ VP+GW Y++A+ +
Sbjct: 222 FIDLCILLGCDYCGTLKGIGPKRALGLIKKHGGIEKILQ---SENLEVPDGWRYRDAQRI 278
Query: 292 FRH-PEIAD 299
F PEI D
Sbjct: 279 FGSLPEIGD 287
Score = 48.5 bits (114), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 35/72 (48%), Gaps = 5/72 (6%)
Query: 395 DAQKALAKAQEQG-----KLKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSTTT 449
DAQ+ E G + W D +G+V +L +K F +R+ G +KL+ +R
Sbjct: 274 DAQRIFGSLPEIGDAREFNISWGSIDRNGIVSFLVEEKGFDLERVNRGIEKLVNSRKKGV 333
Query: 450 QGRLDSFFTIRR 461
QGRLD F R
Sbjct: 334 QGRLDGFIARSR 345
Score = 46.2 bits (108), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 29/55 (52%)
Query: 1 MTLKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSSTTQGRLDSFFTIRR 55
+ W D +G+V +L +K F +R+ G +KL+ +R QGRLD F R
Sbjct: 291 FNISWGSIDRNGIVSFLVEEKGFDLERVNRGIEKLVNSRKKGVQGRLDGFIARSR 345
>gi|68062082|ref|XP_673044.1| hypothetical protein [Plasmodium berghei strain ANKA]
gi|56490604|emb|CAI01886.1| hypothetical protein PB300433.00.0 [Plasmodium berghei]
Length = 375
Score = 143 bits (361), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 75/157 (47%), Positives = 103/157 (65%), Gaps = 12/157 (7%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEA-----------RKLP 109
+PCEAEAQCA + K +ATATED DAL FG+ IL+R++ + + R
Sbjct: 157 SPCEAEAQCAFLTKYEMAHATATEDADALVFGTKILIRNLNANASSNKNKNKNSSKRGYI 216
Query: 110 VQEFHLEKVLEGMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENI 169
+ E +LE+VL+G++L+ +EFID CIL GCDYCD+I+GIG K A LIKE+ IE I++NI
Sbjct: 217 LTEINLEQVLKGLKLTMDEFIDFCILCGCDYCDTIKGIGSKTAYNLIKEYNCIENIIKNI 276
Query: 170 DTKKYTVPEGWLYKEARELFRHPEVADPETIEFIDLC 206
D KY VP + Y EAR+ F P+V + ++ ID C
Sbjct: 277 DQNKYQVPANFKYVEARQSFIKPKVLEKSEVK-IDWC 312
Score = 122 bits (305), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 63/116 (54%), Positives = 83/116 (71%), Gaps = 11/116 (9%)
Query: 304 ELVADVAPSSIRE-------SRKICIDASMSLYQFLIAVRSEGNQ---LMSVDGEPTSHL 353
+ +AD AP++I+E R + IDASMSLYQF+IA+R +G+Q LM+ GE TSH+
Sbjct: 8 KFIADTAPNAIKEIKIENLMGRVVAIDASMSLYQFIIAIR-DGDQYGNLMNESGETTSHI 66
Query: 354 MGTFYRTIRLVEHGLKPIYVFDGKPPTLKSGELNKRMEKREDAQKALAKAQEQGKL 409
G RTI+L+E+GLKPIYVFDG PP LK EL KR EKR+ A++ L KA+E+G L
Sbjct: 67 SGLMSRTIKLMENGLKPIYVFDGAPPELKGSELEKRGEKRQKAEELLIKAKEEGNL 122
Score = 84.7 bits (208), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 43/91 (47%), Positives = 57/91 (62%), Gaps = 2/91 (2%)
Query: 232 FIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGWLYKEAREL 291
FID CIL GCDYCD+I+GIG K A LIKE+ IE I++NID KY VP + Y EAR+
Sbjct: 236 FIDFCILCGCDYCDTIKGIGSKTAYNLIKEYNCIENIIKNIDQNKYQVPANFKYVEARQS 295
Query: 292 FRHPEIADPETIELVADVAPSSIRESRKICI 322
F P++ + +++ D I E +K I
Sbjct: 296 FIKPKVLEKSEVKI--DWCEPKIEELKKFLI 324
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/71 (40%), Positives = 41/71 (57%)
Query: 388 KRMEKREDAQKALAKAQEQGKLKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARST 447
K +E R+ K + + K+ W +P + L K+L + NF E R+ N +LLKAR
Sbjct: 288 KYVEARQSFIKPKVLEKSEVKIDWCEPKIEELKKFLIKEHNFNEVRVTNYITRLLKARKV 347
Query: 448 TTQGRLDSFFT 458
TTQ RLD+FFT
Sbjct: 348 TTQRRLDTFFT 358
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/50 (48%), Positives = 32/50 (64%)
Query: 3 LKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSSTTQGRLDSFFT 52
+ W +P + L K+L + NF E R+ N +LLKAR TTQ RLD+FFT
Sbjct: 309 IDWCEPKIEELKKFLIKEHNFNEVRVTNYITRLLKARKVTTQRRLDTFFT 358
>gi|340506781|gb|EGR32852.1| hypothetical protein IMG5_068750 [Ichthyophthirius multifiliis]
Length = 348
Score = 143 bits (361), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 73/151 (48%), Positives = 100/151 (66%), Gaps = 11/151 (7%)
Query: 60 KAPCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVL 119
+APCEAEAQCAA+ KA KV+AT TEDMDALTFG+ LLR + ++K P+ E +L
Sbjct: 158 QAPCEAEAQCAALTKAKKVFATVTEDMDALTFGTPTLLRGLN---SKKEPIIEIDYNLML 214
Query: 120 EGMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKIL--------ENIDT 171
+ +EL+ E+F+DLCIL GCDY I GIGP A +LIKEH ++E ++ EN
Sbjct: 215 QELELTQEQFVDLCILCGCDYLVRIDGIGPITAYKLIKEHLTLENVIAYMEKANDENSKK 274
Query: 172 KKYTVPEGWLYKEARELFRHPEVADPETIEF 202
+K+ +P + Y AR+LF +P + DPE +E
Sbjct: 275 QKFKIPSEYNYVGARDLFFNPVIEDPEKMEL 305
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 48/117 (41%), Positives = 68/117 (58%), Gaps = 18/117 (15%)
Query: 303 IELVADVAPSSIRES-------RKICIDASMSLYQFLIAVRSEGN----QLMSVDGEPTS 351
++L+ + AP I+ + R++ DASM++YQFL S + L DG T+
Sbjct: 7 MDLLREKAPKCIKTADLKFYGGRQVACDASMAMYQFLATTSSSSDFQIYNLTDKDGNKTA 66
Query: 352 HLMGTFYRTIRLVEHGLKPIYVFDGKPPTLKSGELNKRMEKREDAQKALAKAQEQGK 408
HL+G F RT+ L++ G+KP ++FDGKPP KSGEL KR QKA A A E+ K
Sbjct: 67 HLVGLFNRTVMLIDSGIKPAWIFDGKPPEFKSGELTKR-------QKAKANALEKQK 116
Score = 75.9 bits (185), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 38/82 (46%), Positives = 51/82 (62%), Gaps = 8/82 (9%)
Query: 232 FIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKIL--------ENIDTKKYTVPEGW 283
F+DLCIL GCDY I GIGP A +LIKEH ++E ++ EN +K+ +P +
Sbjct: 224 FVDLCILCGCDYLVRIDGIGPITAYKLIKEHLTLENVIAYMEKANDENSKKQKFKIPSEY 283
Query: 284 LYKEARELFRHPEIADPETIEL 305
Y AR+LF +P I DPE +EL
Sbjct: 284 NYVGARDLFFNPVIEDPEKMEL 305
>gi|389740276|gb|EIM81467.1| PIN domain-like protein [Stereum hirsutum FP-91666 SS1]
Length = 528
Score = 143 bits (360), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 62/113 (54%), Positives = 85/113 (75%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVLE 120
AP EAEAQCA + + GKVYA +EDMD LTF + L RH+TFSEA+K P+ E L K LE
Sbjct: 156 APSEAEAQCAELARGGKVYAAGSEDMDTLTFSAPTLFRHLTFSEAKKAPITEVTLSKALE 215
Query: 121 GMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKK 173
G+ + +FIDLCILLGCDY + I+G+GPK A++LI+EH ++++LE++ K+
Sbjct: 216 GLGMKMPQFIDLCILLGCDYLEPIKGVGPKTALKLIREHGGLKEVLEHLKEKQ 268
Score = 114 bits (285), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 56/94 (59%), Positives = 71/94 (75%), Gaps = 8/94 (8%)
Query: 305 LVADVAPSSIRE-------SRKICIDASMSLYQFLIAVRSEGNQLMSVD-GEPTSHLMGT 356
L+ + AP+SI+E RK+ IDASMS+YQFLIAVR + ++++ D GE TSHLMG
Sbjct: 9 LLLENAPNSIKEHDIKTLFGRKVAIDASMSIYQFLIAVRQKDGEMLTNDAGETTSHLMGF 68
Query: 357 FYRTIRLVEHGLKPIYVFDGKPPTLKSGELNKRM 390
FYRTIR+VE+G+KP YVFDGKPP LK+G L KR
Sbjct: 69 FYRTIRIVENGIKPAYVFDGKPPDLKAGVLAKRF 102
Score = 68.9 bits (167), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 36/110 (32%), Positives = 63/110 (57%), Gaps = 20/110 (18%)
Query: 167 ENIDTKKYTVPEGWLYKEARELFRHPEVADPETIEFIDLCILLGCDYCDSIRGIGPKRAI 226
E++DT ++ P LFRH ++ + ++ + ++ G+G K
Sbjct: 179 EDMDTLTFSAPT---------LFRHLTFSEAKKAPITEVTL------SKALEGLGMK--- 220
Query: 227 ELLYSFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKK 276
+ FIDLCILLGCDY + I+G+GPK A++LI+EH ++++LE++ K+
Sbjct: 221 --MPQFIDLCILLGCDYLEPIKGVGPKTALKLIREHGGLKEVLEHLKEKQ 268
Score = 65.5 bits (158), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 37/83 (44%), Positives = 47/83 (56%), Gaps = 1/83 (1%)
Query: 3 LKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSSTTQGRLDSFFTIRREEKRK-A 61
L W PD DGLV++L +K F EDR+R GA+KL K ++ QGRLD FFT++ + K A
Sbjct: 435 LDWKAPDVDGLVQFLVVEKGFNEDRVRKGAEKLSKFLNAKQQGRLDGFFTVQPKAKESPA 494
Query: 62 PCEAEAQCAAMVKAGKVYATATE 84
P A K GK A E
Sbjct: 495 PKGKGAAKGKDAKGGKRKNDAKE 517
Score = 63.5 bits (153), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 29/56 (51%), Positives = 38/56 (67%)
Query: 409 LKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSTTTQGRLDSFFTIRREEK 464
L W PD DGLV++L +K F EDR+R GA+KL K + QGRLD FFT++ + K
Sbjct: 435 LDWKAPDVDGLVQFLVVEKGFNEDRVRKGAEKLSKFLNAKQQGRLDGFFTVQPKAK 490
>gi|397621116|gb|EJK66115.1| hypothetical protein THAOC_12982 [Thalassiosira oceanica]
Length = 434
Score = 143 bits (360), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 64/105 (60%), Positives = 86/105 (81%)
Query: 76 GKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVLEGMELSHEEFIDLCIL 135
GKVYATATEDMDALTF + I +R MTF++A + +QE + K L G+ L+H++F+DLCIL
Sbjct: 175 GKVYATATEDMDALTFQTPIQVRKMTFAKASQAEIQEVNYSKALIGLGLNHDQFVDLCIL 234
Query: 136 LGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGW 180
LGCDYCD+I+GIGPK A++LIKEH +IE IL+ ++ +KYTVPE +
Sbjct: 235 LGCDYCDTIKGIGPKTALKLIKEHNNIETILKTLNREKYTVPESY 279
Score = 111 bits (277), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 65/131 (49%), Positives = 87/131 (66%), Gaps = 14/131 (10%)
Query: 304 ELVADVAPSSIRE-------SRKICIDASMSLYQFLIAVRSEGNQ------LMSVDGEPT 350
+L++D AP SIRE RKI +DASM++YQ LIA+RS GN L + DGE T
Sbjct: 8 KLLSDEAPDSIREVPLSSLHGRKIAVDASMAIYQMLIAIRS-GNPNMAATVLTNADGETT 66
Query: 351 SHLMGTFYRTIRLVEHGLKPIYVFDGKPPTLKSGELNKRMEKREDAQKALAKAQEQGKLK 410
SH+ G F RTI+ + G++P+YVFDGKPP+ KSGEL KR EKR+ A++AL A+E G ++
Sbjct: 67 SHIQGIFNRTIKFITEGIRPVYVFDGKPPSFKSGELLKRREKRQKAEEALKAAEESGDVE 126
Query: 411 WSDPDEDGLVK 421
D LV+
Sbjct: 127 EQDKHTKRLVR 137
Score = 86.3 bits (212), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 38/73 (52%), Positives = 53/73 (72%), Gaps = 5/73 (6%)
Query: 211 CDYCDSIRGIGPKRAIELLYSFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILE 270
+Y ++ G+G F+DLCILLGCDYCD+I+GIGPK A++LIKEH +IE IL+
Sbjct: 212 VNYSKALIGLGLNHD-----QFVDLCILLGCDYCDTIKGIGPKTALKLIKEHNNIETILK 266
Query: 271 NIDTKKYTVPEGW 283
++ +KYTVPE +
Sbjct: 267 TLNREKYTVPESY 279
>gi|410924704|ref|XP_003975821.1| PREDICTED: probable flap endonuclease 1 homolog [Takifugu rubripes]
Length = 297
Score = 142 bits (357), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 67/145 (46%), Positives = 103/145 (71%), Gaps = 2/145 (1%)
Query: 60 KAPCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVL 119
+AP +AEA CA +VK G V A A+EDMD L FG++IL+R + + + V E+ L K+L
Sbjct: 123 QAPGDAEALCAWLVKEGTVDAVASEDMDTLPFGASILIRQL--NSKKDGEVIEYSLSKLL 180
Query: 120 EGMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEG 179
E ++++H+EF+DLCILLGCDYC+ I G+GPKRA+ LI++HR+IE ++ +++ K + VP
Sbjct: 181 ERLQINHQEFVDLCILLGCDYCEKICGLGPKRALTLIQKHRTIENVILHVNRKTHPVPLF 240
Query: 180 WLYKEARELFRHPEVADPETIEFID 204
W YKEAR++F +P + + +
Sbjct: 241 WKYKEARKIFLDAPRTEPAELTWTE 265
Score = 85.1 bits (209), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 35/61 (57%), Positives = 50/61 (81%)
Query: 232 FIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGWLYKEAREL 291
F+DLCILLGCDYC+ I G+GPKRA+ LI++HR+IE ++ +++ K + VP W YKEAR++
Sbjct: 190 FVDLCILLGCDYCEKICGLGPKRALTLIQKHRTIENVILHVNRKTHPVPLFWKYKEARKI 249
Query: 292 F 292
F
Sbjct: 250 F 250
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 39/75 (52%), Gaps = 12/75 (16%)
Query: 317 SRKICIDASMSLYQFLIAVRSEGNQLMSVDGEPTSHLMGTFYRTIRLVEHGLKPIYVFDG 376
+ I +D S+ + QF A S S L+G F+R + +EH +KP++VFDG
Sbjct: 28 GKAIALDTSIVVNQFRAATPS------------LSPLIGVFFRALTFLEHDIKPVFVFDG 75
Query: 377 KPPTLKSGELNKRME 391
+PP K L KR E
Sbjct: 76 RPPGEKRAVLEKRAE 90
>gi|452822684|gb|EME29701.1| flap endonuclease-1 [Galdieria sulphuraria]
Length = 377
Score = 140 bits (353), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 73/146 (50%), Positives = 102/146 (69%), Gaps = 6/146 (4%)
Query: 60 KAPCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHM-----TFSEARKLPVQEFH 114
+AP EAEAQCA++ K VYATA+EDMD+LTFGS+ ++R + + +E + + EF
Sbjct: 154 EAPEEAEAQCASLCKENLVYATASEDMDSLTFGSSKVIRQLWVGATSTAEKKGIHPLEFS 213
Query: 115 LEKVLEGMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKY 174
LEK L + S+E+FIDLCIL GCDY DSIRGIGP +A LI++H ++E LE I +K+
Sbjct: 214 LEKALLELNFSYEQFIDLCILCGCDYLDSIRGIGPYKAFNLIRKHGNLEGALEEI-KEKH 272
Query: 175 TVPEGWLYKEARELFRHPEVADPETI 200
VP+ + Y +ARELF P+V P ++
Sbjct: 273 DVPDHFPYDKARELFLKPKVHSPSSV 298
Score = 116 bits (291), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 60/114 (52%), Positives = 80/114 (70%), Gaps = 7/114 (6%)
Query: 304 ELVADVAPSSIRE-------SRKICIDASMSLYQFLIAVRSEGNQLMSVDGEPTSHLMGT 356
+L+ D APS +++ RKI IDASM++YQFL AVR+ + L + GE TSHL G
Sbjct: 8 KLLGDYAPSCVQQQELKNYFGRKIAIDASMNIYQFLSAVRAGADNLRNEAGEVTSHLSGL 67
Query: 357 FYRTIRLVEHGLKPIYVFDGKPPTLKSGELNKRMEKREDAQKALAKAQEQGKLK 410
FYRT RL+E G+ P YVFDGKPP LKSGEL+KR+E R A+ + A A+E+G ++
Sbjct: 68 FYRTTRLMELGIMPCYVFDGKPPELKSGELSKRIEARRQAEASAALAKEEGDVE 121
Score = 85.1 bits (209), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 47/108 (43%), Positives = 66/108 (61%), Gaps = 10/108 (9%)
Query: 207 ILLGCDYCDSIRGIGP------KRAIELLYS---FIDLCILLGCDYCDSIRGIGPKRAIE 257
+ +G +GI P K +EL +S FIDLCIL GCDY DSIRGIGP +A
Sbjct: 194 LWVGATSTAEKKGIHPLEFSLEKALLELNFSYEQFIDLCILCGCDYLDSIRGIGPYKAFN 253
Query: 258 LIKEHRSIEKILENIDTKKYTVPEGWLYKEARELFRHPEIADPETIEL 305
LI++H ++E LE I +K+ VP+ + Y +ARELF P++ P ++ L
Sbjct: 254 LIRKHGNLEGALEEI-KEKHDVPDHFPYDKARELFLKPKVHSPSSVVL 300
Score = 64.7 bits (156), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 29/71 (40%), Positives = 46/71 (64%), Gaps = 8/71 (11%)
Query: 1 MTLKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSSTTQGRLDSFFTIRREE--- 57
+ L+WS PDE G+++ L + NF ED IR K+L ++ +++QGRL++FF+I+ +E
Sbjct: 298 VVLEWSPPDEQGIIQMLVHESNFNEDNIRKALKRLAHSKHASSQGRLENFFSIKPKEQQD 357
Query: 58 -----KRKAPC 63
KRKAP
Sbjct: 358 PSTDKKRKAPV 368
Score = 60.8 bits (146), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 24/57 (42%), Positives = 41/57 (71%)
Query: 409 LKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSTTTQGRLDSFFTIRREEKR 465
L+WS PDE G+++ L + NF ED IR K+L ++ ++QGRL++FF+I+ +E++
Sbjct: 300 LEWSPPDEQGIIQMLVHESNFNEDNIRKALKRLAHSKHASSQGRLENFFSIKPKEQQ 356
>gi|388583596|gb|EIM23897.1| PIN domain-like protein [Wallemia sebi CBS 633.66]
Length = 433
Score = 140 bits (352), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 59/107 (55%), Positives = 86/107 (80%)
Query: 60 KAPCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVL 119
+AP EAEAQCA +V+ GKV+A +EDMD LTFG+ ILLRH+TFSE +K P+ ++LE+ L
Sbjct: 155 EAPSEAEAQCAELVRGGKVWAAGSEDMDTLTFGAPILLRHLTFSEQKKEPISHYYLEEAL 214
Query: 120 EGMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKIL 166
G+E+ E+F DLCILLGCDY + ++G+GP A++LI+E+ S+++I+
Sbjct: 215 TGLEMGREQFTDLCILLGCDYLEPVKGVGPSTALKLIREYGSLDEIV 261
Score = 122 bits (305), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 62/111 (55%), Positives = 81/111 (72%), Gaps = 8/111 (7%)
Query: 305 LVADVAPSSIRES-------RKICIDASMSLYQFLIAVRS-EGNQLMSVDGEPTSHLMGT 356
++++ +P +I+ + RK+ IDASMS+YQFLIAVR +G QLMS GE TSHLMG
Sbjct: 9 VISEESPKAIKHTDIKSLFGRKVAIDASMSIYQFLIAVRQRDGEQLMSDTGETTSHLMGF 68
Query: 357 FYRTIRLVEHGLKPIYVFDGKPPTLKSGELNKRMEKREDAQKALAKAQEQG 407
FYRT+R+V++G+KP YVFDGKPP LKS L R EKREDA + +A+E G
Sbjct: 69 FYRTLRMVDNGIKPCYVFDGKPPDLKSNVLKSRFEKREDATEQGEEAKETG 119
Score = 75.9 bits (185), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 40/88 (45%), Positives = 53/88 (60%), Gaps = 4/88 (4%)
Query: 376 GKPPTLKSGELNKRMEKREDAQKALAKAQEQG----KLKWSDPDEDGLVKYLCGDKNFAE 431
GK P KSG + E A++ K Q +L W PD DGLV++LC +K FAE
Sbjct: 314 GKQPKTKSGPVIPDFWPYERARELFLKPNVQSADEVELNWEHPDVDGLVQFLCHEKGFAE 373
Query: 432 DRIRNGAKKLLKARSTTTQGRLDSFFTI 459
DR+R GA +L+K +T QGRLDSFF++
Sbjct: 374 DRVRKGADRLIKMLNTKQQGRLDSFFSV 401
Score = 70.1 bits (170), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 29/51 (56%), Positives = 39/51 (76%)
Query: 3 LKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSSTTQGRLDSFFTI 53
L W PD DGLV++LC +K FAEDR+R GA +L+K ++ QGRLDSFF++
Sbjct: 351 LNWEHPDVDGLVQFLCHEKGFAEDRVRKGADRLIKMLNTKQQGRLDSFFSV 401
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 20/38 (52%), Positives = 32/38 (84%)
Query: 232 FIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKIL 269
F DLCILLGCDY + ++G+GP A++LI+E+ S+++I+
Sbjct: 224 FTDLCILLGCDYLEPVKGVGPSTALKLIREYGSLDEIV 261
Score = 46.6 bits (109), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 17/35 (48%), Positives = 26/35 (74%)
Query: 201 EFIDLCILLGCDYCDSIRGIGPKRAIELLYSFIDL 235
+F DLCILLGCDY + ++G+GP A++L+ + L
Sbjct: 223 QFTDLCILLGCDYLEPVKGVGPSTALKLIREYGSL 257
>gi|47212193|emb|CAF90074.1| unnamed protein product [Tetraodon nigroviridis]
Length = 380
Score = 140 bits (352), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 62/97 (63%), Positives = 80/97 (82%)
Query: 106 RKLPVQEFHLEKVLEGMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKI 165
+KLP+QEFH ++L+ + L++E+FIDLCILLGCDYC +I+GIGPKRAI+LIK+H IE+I
Sbjct: 200 KKLPIQEFHFSRILQEIGLTNEQFIDLCILLGCDYCGTIKGIGPKRAIDLIKQHGCIEEI 259
Query: 166 LENIDTKKYTVPEGWLYKEARELFRHPEVADPETIEF 202
LENID+ K+ PE WLYKEAR LF +PEV D T+E
Sbjct: 260 LENIDSNKHPSPEDWLYKEARGLFLNPEVVDCSTVEL 296
Score = 122 bits (305), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 58/89 (65%), Positives = 69/89 (77%), Gaps = 7/89 (7%)
Query: 304 ELVADVAPSSIRE-------SRKICIDASMSLYQFLIAVRSEGNQLMSVDGEPTSHLMGT 356
+L+AD AP +I+E RKI IDASM +YQFLIAVR +GN L + DGE TSHLMG
Sbjct: 8 KLIADQAPGAIKEQDIRNYFGRKIAIDASMCIYQFLIAVRQDGNVLQNEDGETTSHLMGM 67
Query: 357 FYRTIRLVEHGLKPIYVFDGKPPTLKSGE 385
FYRTIR++EHG+KP+YVFDGKPP LKS E
Sbjct: 68 FYRTIRMLEHGIKPVYVFDGKPPQLKSSE 96
Score = 115 bits (288), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 52/74 (70%), Positives = 62/74 (83%)
Query: 232 FIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGWLYKEAREL 291
FIDLCILLGCDYC +I+GIGPKRAI+LIK+H IE+ILENID+ K+ PE WLYKEAR L
Sbjct: 223 FIDLCILLGCDYCGTIKGIGPKRAIDLIKQHGCIEEILENIDSNKHPSPEDWLYKEARGL 282
Query: 292 FRHPEIADPETIEL 305
F +PE+ D T+EL
Sbjct: 283 FLNPEVVDCSTVEL 296
Score = 85.5 bits (210), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 42/74 (56%), Positives = 55/74 (74%), Gaps = 5/74 (6%)
Query: 3 LKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSSTTQGRLDSFFTIRR--EEKRK 60
LKWS PDEDGL++++C +K F+EDRIRNG KK++K+R +TQGRLDSFFT+ KRK
Sbjct: 296 LKWSQPDEDGLIQFMCNEKQFSEDRIRNGCKKIVKSRQGSTQGRLDSFFTVTGSLSSKRK 355
Query: 61 APCEAEAQCAAMVK 74
EAE + +A K
Sbjct: 356 ---EAEGKGSAKKK 366
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 34/51 (66%), Positives = 45/51 (88%)
Query: 409 LKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSTTTQGRLDSFFTI 459
LKWS PDEDGL++++C +K F+EDRIRNG KK++K+R +TQGRLDSFFT+
Sbjct: 296 LKWSQPDEDGLIQFMCNEKQFSEDRIRNGCKKIVKSRQGSTQGRLDSFFTV 346
>gi|392575628|gb|EIW68761.1| hypothetical protein TREMEDRAFT_69192 [Tremella mesenterica DSM
1558]
Length = 437
Score = 140 bits (352), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 62/112 (55%), Positives = 86/112 (76%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVLE 120
AP EAEAQCA + +AGKVYA +EDMD LTF + ILLRH+TFSEA+K+P+ E HL VLE
Sbjct: 156 APGEAEAQCAELARAGKVYAAGSEDMDTLTFSTPILLRHLTFSEAKKMPISEIHLNIVLE 215
Query: 121 GMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTK 172
+ ++ ++FI+LCILLGCDY + +GIGPK A++L++EH S+ ++ + K
Sbjct: 216 ELGMTMDQFIELCILLGCDYLEPCKGIGPKTALKLLREHGSLAAVVSFVRGK 267
Score = 109 bits (272), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 53/97 (54%), Positives = 70/97 (72%), Gaps = 8/97 (8%)
Query: 305 LVADVAPSSIRE-------SRKICIDASMSLYQFLIAVRS-EGNQLMSVDGEPTSHLMGT 356
L+++ AP ++++ RK+ IDASMS+YQFLIAVR +G LM+ G+ TSHLMG
Sbjct: 9 LISENAPRAMKDHEMKTLFGRKVAIDASMSIYQFLIAVRQQDGQMLMNESGDVTSHLMGF 68
Query: 357 FYRTIRLVEHGLKPIYVFDGKPPTLKSGELNKRMEKR 393
FYRTIR+V+ G+KP Y+FDGKPP LK G L KR +R
Sbjct: 69 FYRTIRMVDQGIKPCYIFDGKPPELKGGVLAKRFARR 105
Score = 85.5 bits (210), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 66/229 (28%), Positives = 108/229 (47%), Gaps = 44/229 (19%)
Query: 232 FIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGWLYKEAREL 291
FI+LCILLGCDY + +GIGPK A++L++EH S+ ++ + G + ++A E
Sbjct: 224 FIELCILLGCDYLEPCKGIGPKTALKLLREHGSLAAVVSFV--------RGKMAEKAEE- 274
Query: 292 FRHPEIADPETIELVADVAPSSIRESRKICIDASMSLYQFLIAVRSEGNQLMSVDGEPTS 351
+++ +S + + GN M+ DGE
Sbjct: 275 ---------------------------NAHVNSQLSDVSDIESEEGHGNVRMNSDGE--- 304
Query: 352 HLMGTFYRTIRLVEHGLKPIYVFDGKPPTLKSGELNKRMEKREDAQKALAKAQEQGKLKW 411
++ + ++ + + + P E KR+ ++ D K ++ +L W
Sbjct: 305 EVISSPKKSQTPKKKKKTKVTSAGMQIPEYWPWEEAKRLFQQPDVVKG-----DELELDW 359
Query: 412 SDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSTTTQGRLDSFFTIR 460
PD +GLV++LC DK F EDR+R GA KL K + QGRLD FFT++
Sbjct: 360 KAPDVEGLVQFLCRDKGFNEDRVRAGAAKLAKMLAAKQQGRLDGFFTVK 408
Score = 59.3 bits (142), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 29/54 (53%), Positives = 38/54 (70%)
Query: 1 MTLKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSSTTQGRLDSFFTIR 54
+ L W PD +GLV++LC DK F EDR+R GA KL K ++ QGRLD FFT++
Sbjct: 355 LELDWKAPDVEGLVQFLCRDKGFNEDRVRAGAAKLAKMLAAKQQGRLDGFFTVK 408
Score = 52.4 bits (124), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 37/140 (26%), Positives = 66/140 (47%), Gaps = 40/140 (28%)
Query: 201 EFIDLCILLGCDYCDSIRGIGPKRAIELLYSFIDLCILLGCDYCDSIRGIGPKRA----- 255
+FI+LCILLGCDY + +GIGPK A++LL L ++ +RG ++A
Sbjct: 223 QFIELCILLGCDYLEPCKGIGPKTALKLLREHGSLAAVVSF-----VRGKMAEKAEENAH 277
Query: 256 ----------IELIKEHRSI------EKILEN--------------IDTKKYTVPEGWLY 285
IE + H ++ E+++ + + + +PE W +
Sbjct: 278 VNSQLSDVSDIESEEGHGNVRMNSDGEEVISSPKKSQTPKKKKKTKVTSAGMQIPEYWPW 337
Query: 286 KEARELFRHPEIADPETIEL 305
+EA+ LF+ P++ + +EL
Sbjct: 338 EEAKRLFQQPDVVKGDELEL 357
>gi|299743075|ref|XP_001835524.2| flap endonuclease-1 [Coprinopsis cinerea okayama7#130]
gi|298405488|gb|EAU86309.2| flap endonuclease-1 [Coprinopsis cinerea okayama7#130]
Length = 422
Score = 139 bits (351), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 58/109 (53%), Positives = 85/109 (77%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVLE 120
AP EAEAQCA + + GKVYA +EDMD LTF + IL RH+TFSEA+K P+ E +LE L+
Sbjct: 120 APSEAEAQCAELARGGKVYAAGSEDMDTLTFNAPILFRHLTFSEAKKQPISEINLEAALK 179
Query: 121 GMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENI 169
G+++ +F+DLCILLGCDY + I+G+GPK A++LI+E +++++E++
Sbjct: 180 GLDMDMSQFVDLCILLGCDYLEPIKGVGPKSALKLIREFGGLKEVVEHL 228
Score = 95.1 bits (235), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 44/66 (66%), Positives = 53/66 (80%), Gaps = 1/66 (1%)
Query: 326 MSLYQFLIAVRSEGNQLMSVD-GEPTSHLMGTFYRTIRLVEHGLKPIYVFDGKPPTLKSG 384
MS+YQFLIAVR ++++ D GE TSHLMG FYRTIR+VE+G+KP YVFDGKPP LK G
Sbjct: 1 MSIYQFLIAVRQRDGEMLTNDAGETTSHLMGFFYRTIRIVENGIKPAYVFDGKPPELKKG 60
Query: 385 ELNKRM 390
L+KR
Sbjct: 61 VLSKRF 66
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 31/69 (44%), Positives = 48/69 (69%), Gaps = 2/69 (2%)
Query: 3 LKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSSTTQGRLDSFFTIRREEKRKAP 62
L+W +PD +GLV++L +K F+E+R+R GA+KL K ++ QGRLD FFT++ K+ P
Sbjct: 334 LEWKNPDVEGLVQFLVTEKGFSEERVRKGAEKLTKFLNAKQQGRLDGFFTVK--PKQAPP 391
Query: 63 CEAEAQCAA 71
A+ + AA
Sbjct: 392 PAAKGKGAA 400
Score = 64.7 bits (156), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 27/56 (48%), Positives = 42/56 (75%)
Query: 405 EQGKLKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSTTTQGRLDSFFTIR 460
+Q +L+W +PD +GLV++L +K F+E+R+R GA+KL K + QGRLD FFT++
Sbjct: 330 DQVELEWKNPDVEGLVQFLVTEKGFSEERVRKGAEKLTKFLNAKQQGRLDGFFTVK 385
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 21/44 (47%), Positives = 36/44 (81%)
Query: 229 LYSFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENI 272
+ F+DLCILLGCDY + I+G+GPK A++LI+E +++++E++
Sbjct: 185 MSQFVDLCILLGCDYLEPIKGVGPKSALKLIREFGGLKEVVEHL 228
Score = 52.4 bits (124), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 21/40 (52%), Positives = 30/40 (75%)
Query: 196 DPETIEFIDLCILLGCDYCDSIRGIGPKRAIELLYSFIDL 235
D + +F+DLCILLGCDY + I+G+GPK A++L+ F L
Sbjct: 182 DMDMSQFVDLCILLGCDYLEPIKGVGPKSALKLIREFGGL 221
>gi|74612809|sp|Q76F73.1|FEN1_COPCI RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|46092541|dbj|BAD14303.1| flap endonuclease-1 [Coprinopsis cinerea]
Length = 458
Score = 139 bits (351), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 58/109 (53%), Positives = 85/109 (77%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVLE 120
AP EAEAQCA + + GKVYA +EDMD LTF + IL RH+TFSEA+K P+ E +LE L+
Sbjct: 156 APSEAEAQCAELARGGKVYAAGSEDMDTLTFNAPILFRHLTFSEAKKQPISEINLEAALK 215
Query: 121 GMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENI 169
G+++ +F+DLCILLGCDY + I+G+GPK A++LI+E +++++E++
Sbjct: 216 GLDMDMSQFVDLCILLGCDYLEPIKGVGPKSALKLIREFGGLKEVVEHL 264
Score = 112 bits (281), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 56/94 (59%), Positives = 70/94 (74%), Gaps = 8/94 (8%)
Query: 305 LVADVAPSSIRE-------SRKICIDASMSLYQFLIAVRSEGNQLMSVD-GEPTSHLMGT 356
L+ + AP+SI+E RK+ IDASMS+YQFLIAVR ++++ D GE TSHLMG
Sbjct: 9 LLNEHAPNSIKEHDIKTLFGRKVAIDASMSIYQFLIAVRQRDGEMLTNDAGETTSHLMGF 68
Query: 357 FYRTIRLVEHGLKPIYVFDGKPPTLKSGELNKRM 390
FYRTIR+VE+G+KP YVFDGKPP LK G L+KR
Sbjct: 69 FYRTIRIVENGIKPAYVFDGKPPELKKGVLSKRF 102
Score = 67.4 bits (163), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 31/69 (44%), Positives = 48/69 (69%), Gaps = 2/69 (2%)
Query: 3 LKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSSTTQGRLDSFFTIRREEKRKAP 62
L+W +PD +GLV++L +K F+E+R+R GA+KL K ++ QGRLD FFT++ K+ P
Sbjct: 370 LEWKNPDVEGLVQFLVTEKGFSEERVRKGAEKLTKFLNAKQQGRLDGFFTVK--PKQAPP 427
Query: 63 CEAEAQCAA 71
A+ + AA
Sbjct: 428 PAAKGKGAA 436
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 27/56 (48%), Positives = 42/56 (75%)
Query: 405 EQGKLKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSTTTQGRLDSFFTIR 460
+Q +L+W +PD +GLV++L +K F+E+R+R GA+KL K + QGRLD FFT++
Sbjct: 366 DQVELEWKNPDVEGLVQFLVTEKGFSEERVRKGAEKLTKFLNAKQQGRLDGFFTVK 421
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 21/44 (47%), Positives = 36/44 (81%)
Query: 229 LYSFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENI 272
+ F+DLCILLGCDY + I+G+GPK A++LI+E +++++E++
Sbjct: 221 MSQFVDLCILLGCDYLEPIKGVGPKSALKLIREFGGLKEVVEHL 264
Score = 52.4 bits (124), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 21/40 (52%), Positives = 30/40 (75%)
Query: 196 DPETIEFIDLCILLGCDYCDSIRGIGPKRAIELLYSFIDL 235
D + +F+DLCILLGCDY + I+G+GPK A++L+ F L
Sbjct: 218 DMDMSQFVDLCILLGCDYLEPIKGVGPKSALKLIREFGGL 257
>gi|317374947|sp|A8NQC2.3|FEN1_COPC7 RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
Length = 458
Score = 139 bits (351), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 58/109 (53%), Positives = 85/109 (77%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVLE 120
AP EAEAQCA + + GKVYA +EDMD LTF + IL RH+TFSEA+K P+ E +LE L+
Sbjct: 156 APSEAEAQCAELARGGKVYAAGSEDMDTLTFNAPILFRHLTFSEAKKQPISEINLEAALK 215
Query: 121 GMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENI 169
G+++ +F+DLCILLGCDY + I+G+GPK A++LI+E +++++E++
Sbjct: 216 GLDMDMSQFVDLCILLGCDYLEPIKGVGPKSALKLIREFGGLKEVVEHL 264
Score = 112 bits (281), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 56/94 (59%), Positives = 70/94 (74%), Gaps = 8/94 (8%)
Query: 305 LVADVAPSSIRE-------SRKICIDASMSLYQFLIAVRSEGNQLMSVD-GEPTSHLMGT 356
L+ + AP+SI+E RK+ IDASMS+YQFLIAVR ++++ D GE TSHLMG
Sbjct: 9 LLNEHAPNSIKEHDIKTLFGRKVAIDASMSIYQFLIAVRQRDGEMLTNDAGETTSHLMGF 68
Query: 357 FYRTIRLVEHGLKPIYVFDGKPPTLKSGELNKRM 390
FYRTIR+VE+G+KP YVFDGKPP LK G L+KR
Sbjct: 69 FYRTIRIVENGIKPAYVFDGKPPELKKGVLSKRF 102
Score = 67.4 bits (163), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 31/69 (44%), Positives = 48/69 (69%), Gaps = 2/69 (2%)
Query: 3 LKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSSTTQGRLDSFFTIRREEKRKAP 62
L+W +PD +GLV++L +K F+E+R+R GA+KL K ++ QGRLD FFT++ K+ P
Sbjct: 370 LEWKNPDVEGLVQFLVTEKGFSEERVRKGAEKLTKFLNAKQQGRLDGFFTVK--PKQAPP 427
Query: 63 CEAEAQCAA 71
A+ + AA
Sbjct: 428 PAAKGKGAA 436
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 27/56 (48%), Positives = 42/56 (75%)
Query: 405 EQGKLKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSTTTQGRLDSFFTIR 460
+Q +L+W +PD +GLV++L +K F+E+R+R GA+KL K + QGRLD FFT++
Sbjct: 366 DQVELEWKNPDVEGLVQFLVTEKGFSEERVRKGAEKLTKFLNAKQQGRLDGFFTVK 421
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 21/44 (47%), Positives = 36/44 (81%)
Query: 229 LYSFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENI 272
+ F+DLCILLGCDY + I+G+GPK A++LI+E +++++E++
Sbjct: 221 MSQFVDLCILLGCDYLEPIKGVGPKSALKLIREFGGLKEVVEHL 264
Score = 52.4 bits (124), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 21/40 (52%), Positives = 30/40 (75%)
Query: 196 DPETIEFIDLCILLGCDYCDSIRGIGPKRAIELLYSFIDL 235
D + +F+DLCILLGCDY + I+G+GPK A++L+ F L
Sbjct: 218 DMDMSQFVDLCILLGCDYLEPIKGVGPKSALKLIREFGGL 257
>gi|357621466|gb|EHJ73288.1| flap endonuclease-1 [Danaus plexippus]
Length = 322
Score = 139 bits (350), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 78/125 (62%), Positives = 95/125 (76%), Gaps = 7/125 (5%)
Query: 304 ELVADVAPSSIRES-------RKICIDASMSLYQFLIAVRSEGNQLMSVDGEPTSHLMGT 356
+L+AD+AP +++E+ RK+ IDASMSLYQFLIAVRS+G QL SVDGE TSHLMGT
Sbjct: 8 KLIADIAPMAVKETEIKNYFGRKVAIDASMSLYQFLIAVRSQGAQLTSVDGETTSHLMGT 67
Query: 357 FYRTIRLVEHGLKPIYVFDGKPPTLKSGELNKRMEKREDAQKALAKAQEQGKLKWSDPDE 416
FYRTIRL+E G+KP+YVFDGKPP +KS +LNKR E+RE+A+K L KA E G D
Sbjct: 68 FYRTIRLIEDGIKPVYVFDGKPPDMKSHQLNKRAERREEAEKELQKATEAGDTASIDKFN 127
Query: 417 DGLVK 421
LVK
Sbjct: 128 RRLVK 132
Score = 120 bits (300), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 52/74 (70%), Positives = 63/74 (85%)
Query: 232 FIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGWLYKEAREL 291
FIDLCILLGCDYC SI+GIGPKRAIELIK+HRSIE++L NIDTKKY+ PE W Y+ AR L
Sbjct: 167 FIDLCILLGCDYCGSIKGIGPKRAIELIKQHRSIEQVLHNIDTKKYSPPENWEYENARRL 226
Query: 292 FRHPEIADPETIEL 305
F+ PE+ + + +EL
Sbjct: 227 FQQPEVTEAKDVEL 240
Score = 119 bits (299), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 53/76 (69%), Positives = 63/76 (82%)
Query: 127 EEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGWLYKEAR 186
E FIDLCILLGCDYC SI+GIGPKRAIELIK+HRSIE++L NIDTKKY+ PE W Y+ AR
Sbjct: 165 ELFIDLCILLGCDYCGSIKGIGPKRAIELIKQHRSIEQVLHNIDTKKYSPPENWEYENAR 224
Query: 187 ELFRHPEVADPETIEF 202
LF+ PEV + + +E
Sbjct: 225 RLFQQPEVTEAKDVEL 240
Score = 93.6 bits (231), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 45/78 (57%), Positives = 57/78 (73%), Gaps = 3/78 (3%)
Query: 3 LKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSSTTQGRLDSFFTI---RREEKR 59
LKWSDPDE+GLVK+LCGDK F E+R+RNGAKKL+KAR+ TTQGRLD FF + KR
Sbjct: 240 LKWSDPDEEGLVKFLCGDKQFNEERVRNGAKKLMKARTGTTQGRLDGFFKVLSTTPNPKR 299
Query: 60 KAPCEAEAQCAAMVKAGK 77
KA + ++ + AG+
Sbjct: 300 KAEEDKKSANKKVKTAGR 317
Score = 92.4 bits (228), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 39/51 (76%), Positives = 46/51 (90%)
Query: 409 LKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSTTTQGRLDSFFTI 459
LKWSDPDE+GLVK+LCGDK F E+R+RNGAKKL+KAR+ TTQGRLD FF +
Sbjct: 240 LKWSDPDEEGLVKFLCGDKQFNEERVRNGAKKLMKARTGTTQGRLDGFFKV 290
>gi|323457006|gb|EGB12872.1| hypothetical protein AURANDRAFT_19112 [Aureococcus anophagefferens]
Length = 396
Score = 137 bits (346), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 76/147 (51%), Positives = 95/147 (64%), Gaps = 13/147 (8%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKL-PVQEFHLEKVL 119
APCEAEAQCA +V+ GK +A TEDMDALTFGS LR+MTF++ K V E VL
Sbjct: 161 APCEAEAQCAELVRGGKAHAVGTEDMDALTFGSTRQLRNMTFTKKSKDDKVLEITHAAVL 220
Query: 120 EGMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKIL-ENIDTK-KYTVP 177
EG+ LS+ EF+D CIL GCDY +IRG+GPK A++L+KEH SIE IL + + K + VP
Sbjct: 221 EGLGLSNAEFVDFCILCGCDYTSTIRGVGPKTALKLVKEHGSIEAILAKGLKAKQRGDVP 280
Query: 178 EGW----------LYKEARELFRHPEV 194
+ W Y AR LF + EV
Sbjct: 281 DEWDDADDGPFVPAYVGARNLFNNHEV 307
Score = 115 bits (289), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 60/133 (45%), Positives = 86/133 (64%), Gaps = 20/133 (15%)
Query: 303 IELVADVAPSSIRE-------SRKICIDASMSLYQFLIAVRSEG------NQLMSVDGEP 349
+ ++ + AP +++E R + IDASMSLYQFLIA+R +G + L + +GE
Sbjct: 7 MGVINEHAPGAVKELVIEGYTGRVVAIDASMSLYQFLIAIRHQGEGGAPSSVLTNAEGEQ 66
Query: 350 TSHLMGTFYRTIRLVEHGLKPIYVFDGKPPTLKSGELNKRMEKREDAQKALAKAQEQGKL 409
TSH+ G F RTIRL++ G++P+YVFDGKPP +K GEL KR KR++A+ AL KA E
Sbjct: 67 TSHIQGMFNRTIRLLQAGVRPVYVFDGKPPNMKGGELAKRTAKRQEAEAALKKATE---- 122
Query: 410 KWSDPDEDGLVKY 422
+ D +G+ KY
Sbjct: 123 ---NDDAEGISKY 132
Score = 67.4 bits (163), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 37/86 (43%), Positives = 50/86 (58%), Gaps = 12/86 (13%)
Query: 232 FIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKIL-ENIDTK-KYTVPEGW------ 283
F+D CIL GCDY +IRG+GPK A++L+KEH SIE IL + + K + VP+ W
Sbjct: 230 FVDFCILCGCDYTSTIRGVGPKTALKLVKEHGSIEAILAKGLKAKQRGDVPDEWDDADDG 289
Query: 284 ----LYKEARELFRHPEIADPETIEL 305
Y AR LF + E+ +EL
Sbjct: 290 PFVPAYVGARNLFNNHEVTPCGDVEL 315
Score = 48.5 bits (114), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 30/60 (50%)
Query: 3 LKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSSTTQGRLDSFFTIRREEKRKAP 62
L W PDE GL +L F E R+ K+L A+ TQ R+DSFF + + AP
Sbjct: 315 LSWGKPDEAGLRAFLVERMGFGEQRVEGALKRLTSAQGQRTQRRMDSFFKVLPPKPGAAP 374
Score = 47.0 bits (110), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 28/52 (53%)
Query: 408 KLKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSTTTQGRLDSFFTI 459
+L W PDE GL +L F E R+ K+L A+ TQ R+DSFF +
Sbjct: 314 ELSWGKPDEAGLRAFLVERMGFGEQRVEGALKRLTSAQGQRTQRRMDSFFKV 365
>gi|123335114|ref|XP_001294157.1| XPG I-region family protein [Trichomonas vaginalis G3]
gi|121871805|gb|EAX81227.1| XPG I-region family protein [Trichomonas vaginalis G3]
Length = 335
Score = 137 bits (346), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 70/135 (51%), Positives = 98/135 (72%), Gaps = 2/135 (1%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVLE 120
APCEAEA+CAA+ KAG V A ATEDMD+L F + L+RH+++ A+ + + + ++E
Sbjct: 124 APCEAEAECAALNKAGLVDAMATEDMDSLAFATPQLIRHLSYG-AKGDDLLQIDYKIMME 182
Query: 121 GMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGW 180
L+ EEF+D CIL+GCDYCD+I+GIG K A ELIK++ +IE I++N+D KKY +PE +
Sbjct: 183 KSGLTREEFVDFCILMGCDYCDTIKGIGKKHAYELIKKYHNIETIIKNLD-KKYELPEDF 241
Query: 181 LYKEARELFRHPEVA 195
Y ARELF + EV
Sbjct: 242 DYVRARELFFNHEVT 256
Score = 116 bits (290), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 52/87 (59%), Positives = 66/87 (75%)
Query: 321 CIDASMSLYQFLIAVRSEGNQLMSVDGEPTSHLMGTFYRTIRLVEHGLKPIYVFDGKPPT 380
IDAS+S+YQFL++VR G QL+ +G TSHL G RT+RL+E G+KP+YVFDGKPP
Sbjct: 1 AIDASLSIYQFLVSVRHTGQQLVDSEGNTTSHLQGVLSRTVRLIESGVKPVYVFDGKPPE 60
Query: 381 LKSGELNKRMEKREDAQKALAKAQEQG 407
+K EL KR+E+RE+AQK L KA E G
Sbjct: 61 MKGAELAKRLERREEAQKELEKAIESG 87
Score = 83.2 bits (204), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 38/67 (56%), Positives = 52/67 (77%), Gaps = 1/67 (1%)
Query: 232 FIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGWLYKEAREL 291
F+D CIL+GCDYCD+I+GIG K A ELIK++ +IE I++N+D KKY +PE + Y AREL
Sbjct: 191 FVDFCILMGCDYCDTIKGIGKKHAYELIKKYHNIETIIKNLD-KKYELPEDFDYVRAREL 249
Query: 292 FRHPEIA 298
F + E+
Sbjct: 250 FFNHEVT 256
Score = 51.6 bits (122), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 32/51 (62%)
Query: 1 MTLKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSSTTQGRLDSFF 51
+ L W PD + + ++LCG + FAE R+ K++KAR TQ R+D+FF
Sbjct: 259 VNLTWKKPDVEKVKEFLCGSRMFAESRVEAACAKIVKARGKGTQMRMDNFF 309
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/49 (42%), Positives = 31/49 (63%)
Query: 409 LKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSTTTQGRLDSFF 457
L W PD + + ++LCG + FAE R+ K++KAR TQ R+D+FF
Sbjct: 261 LTWKKPDVEKVKEFLCGSRMFAESRVEAACAKIVKARGKGTQMRMDNFF 309
>gi|269859663|ref|XP_002649556.1| FLAP endonuclease-1 [Enterocytozoon bieneusi H348]
gi|317374899|sp|B7XHS8.1|FEN1_ENTBH RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|220067107|gb|EED44575.1| FLAP endonuclease-1 [Enterocytozoon bieneusi H348]
Length = 358
Score = 137 bits (345), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 66/129 (51%), Positives = 95/129 (73%), Gaps = 5/129 (3%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVLE 120
AP EAEA CA + K+ V A ATEDMD+L FGS +LLR+ + ++KLPV+E++L K+LE
Sbjct: 154 APSEAEAYCAWLCKSKFVDAVATEDMDSLCFGSPLLLRNFNTALSQKLPVEEYNLHKILE 213
Query: 121 GMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGW 180
G++ + E+F+DLCILLGCDY +IRG+G KRA E IK+++SI+ ++ +D P+ +
Sbjct: 214 GLQFTMEQFVDLCILLGCDYSATIRGVGMKRAFEYIKKYKSIDNLIGIVD-----FPDDF 268
Query: 181 LYKEARELF 189
YKEAR +F
Sbjct: 269 KYKEARTIF 277
Score = 94.4 bits (233), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 46/88 (52%), Positives = 60/88 (68%), Gaps = 1/88 (1%)
Query: 319 KICIDASMSLYQFLIAVRSEGNQLMSVDGEPTSHLMGTFYRTIRLVEHGLKPIYVFDGKP 378
KI IDASM +YQFL+AVR+EG Q +S TSH+ G FYR+IR +E+G+ P++VFDG P
Sbjct: 30 KIAIDASMCIYQFLVAVRAEG-QSLSWGDSTTSHISGIFYRSIRWIENGIIPVFVFDGIP 88
Query: 379 PTLKSGELNKRMEKREDAQKALAKAQEQ 406
P K E KR ++R+D L A EQ
Sbjct: 89 PEEKIHEFEKRTKRRQDINAKLQDAIEQ 116
Score = 67.8 bits (164), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 31/61 (50%), Positives = 44/61 (72%), Gaps = 5/61 (8%)
Query: 232 FIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGWLYKEAREL 291
F+DLCILLGCDY +IRG+G KRA E IK+++SI+ ++ +D P+ + YKEAR +
Sbjct: 222 FVDLCILLGCDYSATIRGVGMKRAFEYIKKYKSIDNLIGIVD-----FPDDFKYKEARTI 276
Query: 292 F 292
F
Sbjct: 277 F 277
Score = 40.4 bits (93), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 25/41 (60%)
Query: 417 DGLVKYLCGDKNFAEDRIRNGAKKLLKARSTTTQGRLDSFF 457
+ ++ +LC +K F + RI G KKL K + Q R+DSFF
Sbjct: 314 EAVIDFLCNEKGFDKGRIETGIKKLQKQKKVNKQTRIDSFF 354
Score = 39.7 bits (91), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 25/41 (60%)
Query: 11 DGLVKYLCGDKNFAEDRIRNGAKKLLKARSSTTQGRLDSFF 51
+ ++ +LC +K F + RI G KKL K + Q R+DSFF
Sbjct: 314 EAVIDFLCNEKGFDKGRIETGIKKLQKQKKVNKQTRIDSFF 354
>gi|406699180|gb|EKD02391.1| flap endonuclease [Trichosporon asahii var. asahii CBS 8904]
Length = 344
Score = 137 bits (345), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 61/112 (54%), Positives = 89/112 (79%), Gaps = 3/112 (2%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVLE 120
AP EAEAQCA + +AGKV+A +EDMD LTF + ILLRH+TFSEA+K+P+ E LE+ L+
Sbjct: 82 APGEAEAQCAELARAGKVFAAGSEDMDTLTFHTPILLRHLTFSEAKKMPISEIKLEEALK 141
Query: 121 GMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTK 172
G++++ ++ LCILLGCDY + ++G+GPK A++L++EH S+EK++E I K
Sbjct: 142 GLDMTMDQ---LCILLGCDYLEPVKGVGPKTALKLMREHGSLEKVVEFIKGK 190
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 23/41 (56%), Positives = 34/41 (82%)
Query: 235 LCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTK 275
LCILLGCDY + ++G+GPK A++L++EH S+EK++E I K
Sbjct: 150 LCILLGCDYLEPVKGVGPKTALKLMREHGSLEKVVEFIKGK 190
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/57 (50%), Positives = 39/57 (68%), Gaps = 3/57 (5%)
Query: 8 PDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSSTTQGRLDSFFTIRRE---EKRKA 61
PD +GLV++L +K F EDR+R GA KL K ++ QGRLD FFT++ + KRKA
Sbjct: 272 PDVEGLVEFLVREKGFKEDRVRAGAAKLSKMLAAKQQGRLDGFFTVKPKTDAPKRKA 328
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 25/47 (53%), Positives = 33/47 (70%)
Query: 414 PDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSTTTQGRLDSFFTIR 460
PD +GLV++L +K F EDR+R GA KL K + QGRLD FFT++
Sbjct: 272 PDVEGLVEFLVREKGFKEDRVRAGAAKLSKMLAAKQQGRLDGFFTVK 318
Score = 43.9 bits (102), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 18/27 (66%), Positives = 23/27 (85%)
Query: 363 LVEHGLKPIYVFDGKPPTLKSGELNKR 389
+V++G+KP YVFDGKPP LKSG L +R
Sbjct: 1 MVDNGIKPCYVFDGKPPDLKSGVLKQR 27
>gi|401888159|gb|EJT52124.1| flap endonuclease [Trichosporon asahii var. asahii CBS 2479]
Length = 359
Score = 137 bits (344), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 61/112 (54%), Positives = 89/112 (79%), Gaps = 3/112 (2%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVLE 120
AP EAEAQCA + +AGKV+A +EDMD LTF + ILLRH+TFSEA+K+P+ E LE+ L+
Sbjct: 97 APGEAEAQCAELARAGKVFAAGSEDMDTLTFHTPILLRHLTFSEAKKMPISEIKLEEALK 156
Query: 121 GMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTK 172
G++++ ++ LCILLGCDY + ++G+GPK A++L++EH S+EK++E I K
Sbjct: 157 GLDMTMDQ---LCILLGCDYLEPVKGVGPKTALKLMREHGSLEKVVEFIKGK 205
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 23/41 (56%), Positives = 34/41 (82%)
Query: 235 LCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTK 275
LCILLGCDY + ++G+GPK A++L++EH S+EK++E I K
Sbjct: 165 LCILLGCDYLEPVKGVGPKTALKLMREHGSLEKVVEFIKGK 205
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/57 (50%), Positives = 39/57 (68%), Gaps = 3/57 (5%)
Query: 8 PDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSSTTQGRLDSFFTIRRE---EKRKA 61
PD +GLV++L +K F EDR+R GA KL K ++ QGRLD FFT++ + KRKA
Sbjct: 287 PDVEGLVEFLVREKGFKEDRVRAGAAKLSKMLAAKQQGRLDGFFTVKPKTDAPKRKA 343
Score = 57.0 bits (136), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 25/47 (53%), Positives = 33/47 (70%)
Query: 414 PDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSTTTQGRLDSFFTIR 460
PD +GLV++L +K F EDR+R GA KL K + QGRLD FFT++
Sbjct: 287 PDVEGLVEFLVREKGFKEDRVRAGAAKLSKMLAAKQQGRLDGFFTVK 333
>gi|302688649|ref|XP_003034004.1| hypothetical protein SCHCODRAFT_81803 [Schizophyllum commune H4-8]
gi|300107699|gb|EFI99101.1| hypothetical protein SCHCODRAFT_81803 [Schizophyllum commune H4-8]
Length = 452
Score = 136 bits (343), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 58/113 (51%), Positives = 84/113 (74%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVLE 120
AP EAEAQCA + + GKVYA +EDMD LTF + IL RH+T SEA+K P+ E +L+ LE
Sbjct: 156 APSEAEAQCAELARGGKVYAAGSEDMDTLTFNAPILFRHLTVSEAKKQPILEINLKAALE 215
Query: 121 GMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKK 173
G+++ F+DLCILLGCDY + I+G+GPK A++L++EH + ++E++ K+
Sbjct: 216 GLDMDLSMFVDLCILLGCDYLEPIKGVGPKSALKLVREHGGLAGVVEHLRAKQ 268
Score = 117 bits (294), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 58/98 (59%), Positives = 75/98 (76%), Gaps = 8/98 (8%)
Query: 305 LVADVAPSSIRE-------SRKICIDASMSLYQFLIAVRSEGNQLMSVD-GEPTSHLMGT 356
L+++ AP S++E RK+ IDASMS+YQFLIAVR + ++++ D GE TSHLMG
Sbjct: 9 LLSEHAPKSMKEHEIKTLFGRKVAIDASMSIYQFLIAVRQKDGEMLTNDAGEITSHLMGL 68
Query: 357 FYRTIRLVEHGLKPIYVFDGKPPTLKSGELNKRMEKRE 394
FYRTIR+VE+G+KP YVFDGKPP LK G L+KR EKR+
Sbjct: 69 FYRTIRIVENGIKPAYVFDGKPPDLKKGVLSKRFEKRD 106
Score = 66.2 bits (160), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 28/56 (50%), Positives = 41/56 (73%)
Query: 3 LKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSSTTQGRLDSFFTIRREEK 58
L+W PD DGLV++L +K F E+R+R GA+KL K ++ QGRLD FFT++ ++K
Sbjct: 358 LEWKSPDVDGLVQFLVNEKGFNEERVRKGAEKLAKFLNAKQQGRLDGFFTVKPKDK 413
Score = 65.9 bits (159), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 28/56 (50%), Positives = 40/56 (71%)
Query: 409 LKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSTTTQGRLDSFFTIRREEK 464
L+W PD DGLV++L +K F E+R+R GA+KL K + QGRLD FFT++ ++K
Sbjct: 358 LEWKSPDVDGLVQFLVNEKGFNEERVRKGAEKLAKFLNAKQQGRLDGFFTVKPKDK 413
Score = 62.8 bits (151), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 33/110 (30%), Positives = 58/110 (52%), Gaps = 20/110 (18%)
Query: 167 ENIDTKKYTVPEGWLYKEARELFRHPEVADPETIEFIDLCILLGCDYCDSIRGIGPKRAI 226
E++DT + P LFRH V++ + +++ + + D
Sbjct: 179 EDMDTLTFNAPI---------LFRHLTVSEAKKQPILEINLKAALEGLDMD--------- 220
Query: 227 ELLYSFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKK 276
L F+DLCILLGCDY + I+G+GPK A++L++EH + ++E++ K+
Sbjct: 221 --LSMFVDLCILLGCDYLEPIKGVGPKSALKLVREHGGLAGVVEHLRAKQ 268
>gi|171679661|ref|XP_001904777.1| hypothetical protein [Podospora anserina S mat+]
gi|170939456|emb|CAP64684.1| unnamed protein product [Podospora anserina S mat+]
Length = 379
Score = 136 bits (343), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 61/112 (54%), Positives = 86/112 (76%), Gaps = 7/112 (6%)
Query: 303 IELVADVAPSSIRES-------RKICIDASMSLYQFLIAVRSEGNQLMSVDGEPTSHLMG 355
+++ D AP +++E RK+ IDASMS+Y FLIAVRS+G QLM+ DG+ TSHLMG
Sbjct: 7 FQIIKDEAPDAVKEGEIKNQFGRKVAIDASMSIYSFLIAVRSDGQQLMNEDGQTTSHLMG 66
Query: 356 TFYRTIRLVEHGLKPIYVFDGKPPTLKSGELNKRMEKREDAQKALAKAQEQG 407
FYRT+R+V++G+KP+YVFDG PP LKSGEL KR +++++A + L +A+E G
Sbjct: 67 MFYRTLRMVDNGIKPLYVFDGAPPKLKSGELAKRFQRKQEAHEGLEEAKETG 118
Score = 127 bits (320), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 64/137 (46%), Positives = 88/137 (64%), Gaps = 19/137 (13%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVLE 120
AP EAEAQCA + +AGKVYA A+EDMD L F S ILLRH+TFSE RK P+QE H+ KVLE
Sbjct: 155 APTEAEAQCAVLARAGKVYAAASEDMDTLCFDSPILLRHLTFSEQRKEPIQEIHVAKVLE 214
Query: 121 GMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIE---KILENIDTKKYTVP 177
G+ + D I + P A++LI+EH+++E K ++ KY +P
Sbjct: 215 GLGM----------------LDPIPKVDPSTALKLIREHKTLEGVVKFMKEDPKSKYVIP 258
Query: 178 EGWLYKEARELFRHPEV 194
E W +++AR+LF +P+V
Sbjct: 259 EDWPFEDARDLFFNPDV 275
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/61 (42%), Positives = 40/61 (65%), Gaps = 2/61 (3%)
Query: 3 LKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSSTTQGRLDSFFTI--RREEKRK 60
KW PD +GLV++L +K F+EDR+R A +L K S+ Q R++ FF + + EE++K
Sbjct: 285 FKWEKPDIEGLVQFLVKEKGFSEDRVRGAAARLEKNMKSSQQSRIEGFFKVQPKTEEQKK 344
Query: 61 A 61
A
Sbjct: 345 A 345
Score = 55.1 bits (131), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 24/61 (39%), Positives = 40/61 (65%), Gaps = 2/61 (3%)
Query: 409 LKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSTTTQGRLDSFFTI--RREEKRK 466
KW PD +GLV++L +K F+EDR+R A +L K ++ Q R++ FF + + EE++K
Sbjct: 285 FKWEKPDIEGLVQFLVKEKGFSEDRVRGAAARLEKNMKSSQQSRIEGFFKVQPKTEEQKK 344
Query: 467 S 467
+
Sbjct: 345 A 345
Score = 52.4 bits (124), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 40/64 (62%), Gaps = 3/64 (4%)
Query: 237 ILLGCDYCDSIRGIGPKRAIELIKEHRSIE---KILENIDTKKYTVPEGWLYKEARELFR 293
+L G D I + P A++LI+EH+++E K ++ KY +PE W +++AR+LF
Sbjct: 212 VLEGLGMLDPIPKVDPSTALKLIREHKTLEGVVKFMKEDPKSKYVIPEDWPFEDARDLFF 271
Query: 294 HPEI 297
+P++
Sbjct: 272 NPDV 275
>gi|403347702|gb|EJY73284.1| FEN-1 nuclease [Oxytricha trifallax]
Length = 392
Score = 135 bits (340), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 67/141 (47%), Positives = 97/141 (68%), Gaps = 10/141 (7%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARK-LPVQEFHLEKVL 119
AP EAEA CA +VK GK +AT +EDMD+LTFGS ++R M+ ++ + + + + L KVL
Sbjct: 151 APGEAEAFCAYLVKEGKAFATVSEDMDSLTFGSPFMIRGMSMAKQKAGIELMQIELSKVL 210
Query: 120 EGMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTK------- 172
++L++EEF+DLCI+ GCDY +I GIG +A + I E+R+IEK+L+ ID +
Sbjct: 211 FSLKLTYEEFVDLCIICGCDYTATITGIGAVKAYKFITEYRTIEKVLKAIDKEIFSSKGK 270
Query: 173 --KYTVPEGWLYKEARELFRH 191
KY +PE + Y+EARELF H
Sbjct: 271 KAKYIIPEDFPYQEARELFLH 291
Score = 78.2 bits (191), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 40/93 (43%), Positives = 56/93 (60%), Gaps = 5/93 (5%)
Query: 320 ICIDASMSLYQFLIA----VRSEG-NQLMSVDGEPTSHLMGTFYRTIRLVEHGLKPIYVF 374
+ + + ++YQFLI+ V+ G Q G T+HL+G F R I+ +HG+K I+VF
Sbjct: 22 VIVSINQAIYQFLISTTYNVKGVGVKQFTDQQGNQTAHLIGLFNRNIQFAQHGIKAIWVF 81
Query: 375 DGKPPTLKSGELNKRMEKREDAQKALAKAQEQG 407
DGKPP LKS L KR E R+ A+ +AQE G
Sbjct: 82 DGKPPELKSRTLEKRKENRDKAEDEKEEAQEDG 114
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 37/80 (46%), Positives = 53/80 (66%), Gaps = 10/80 (12%)
Query: 225 AIELLYS-FIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTK-------- 275
+++L Y F+DLCI+ GCDY +I GIG +A + I E+R+IEK+L+ ID +
Sbjct: 212 SLKLTYEEFVDLCIICGCDYTATITGIGAVKAYKFITEYRTIEKVLKAIDKEIFSSKGKK 271
Query: 276 -KYTVPEGWLYKEARELFRH 294
KY +PE + Y+EARELF H
Sbjct: 272 AKYIIPEDFPYQEARELFLH 291
Score = 52.0 bits (123), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 42/110 (38%), Positives = 59/110 (53%), Gaps = 10/110 (9%)
Query: 356 TFYRTIRLVEHGL-KPIYVFDGKPPTLKSGELNKRMEKRE-----DAQKALAKAQEQGKL 409
T YRTI V + K I+ GK E E RE D ++ L + Q+Q L
Sbjct: 248 TEYRTIEKVLKAIDKEIFSSKGKKAKYIIPEDFPYQEARELFLHQDYKEQLQELQDQ--L 305
Query: 410 KWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSTT--TQGRLDSFF 457
KW+ P+++ + ++L +KNF E+++ NG KKL K T TQ RLDSFF
Sbjct: 306 KWNKPNDEEIKEFLIKEKNFNEEKVDNGLKKLNKFSPTQGRTQVRLDSFF 355
Score = 48.1 bits (113), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 23/51 (45%), Positives = 35/51 (68%), Gaps = 2/51 (3%)
Query: 3 LKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSST--TQGRLDSFF 51
LKW+ P+++ + ++L +KNF E+++ NG KKL K + TQ RLDSFF
Sbjct: 305 LKWNKPNDEEIKEFLIKEKNFNEEKVDNGLKKLNKFSPTQGRTQVRLDSFF 355
>gi|294867245|ref|XP_002765023.1| flap exonuclease, putative [Perkinsus marinus ATCC 50983]
gi|239864903|gb|EEQ97740.1| flap exonuclease, putative [Perkinsus marinus ATCC 50983]
Length = 407
Score = 135 bits (340), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 69/154 (44%), Positives = 94/154 (61%), Gaps = 12/154 (7%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHM--TFSEARK-------LPVQ 111
AP EAEA CAA+V+ GK Y T+DMD LTFGS + ++++ T ++ PV
Sbjct: 159 APEEAEATCAALVRYGKCYGAVTDDMDVLTFGSPVQVKNLFNTLGSGQQGSAGKTTKPVY 218
Query: 112 EFHLEKVLEGMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDT 171
E L VLE +++S ++FID CI+ GCDY D+IRGIGP A +LI EH+SIE +L++ID
Sbjct: 219 EMSLSTVLEQLDVSMDQFIDFCIMCGCDYLDTIRGIGPNNAFKLIVEHKSIEGVLDHIDK 278
Query: 172 KKYTVPEGWL---YKEARELFRHPEVADPETIEF 202
K+ VPE W YK RE F + E +
Sbjct: 279 TKFAVPESWAAGDYKTVREYFLDAPAVERENMNL 312
Score = 104 bits (259), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 53/116 (45%), Positives = 77/116 (66%), Gaps = 11/116 (9%)
Query: 303 IELVADVAPSSIRE-------SRKICIDASMSLYQFLIAVRSEGNQ----LMSVDGEPTS 351
+ V++ AP ++ E R + +DASM LYQF+IAVR G+ L + GE TS
Sbjct: 7 FKFVSENAPKAVSEQKMENYTGRSLAVDASMCLYQFVIAVRLGGDNQHANLTNAAGEVTS 66
Query: 352 HLMGTFYRTIRLVEHGLKPIYVFDGKPPTLKSGELNKRMEKREDAQKALAKAQEQG 407
H+ G RT+R++E G+KP+YVFDGKPP+LK+GEL KR E ++ A++ L +A E+G
Sbjct: 67 HISGMVTRTLRMMEAGIKPVYVFDGKPPSLKTGELAKRREVKKKAEEDLKEAIEKG 122
Score = 85.5 bits (210), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 39/77 (50%), Positives = 49/77 (63%), Gaps = 3/77 (3%)
Query: 232 FIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGWL---YKEA 288
FID CI+ GCDY D+IRGIGP A +LI EH+SIE +L++ID K+ VPE W YK
Sbjct: 236 FIDFCIMCGCDYLDTIRGIGPNNAFKLIVEHKSIEGVLDHIDKTKFAVPESWAAGDYKTV 295
Query: 289 RELFRHPEIADPETIEL 305
RE F + E + L
Sbjct: 296 REYFLDAPAVERENMNL 312
Score = 51.6 bits (122), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/63 (41%), Positives = 37/63 (58%), Gaps = 5/63 (7%)
Query: 1 MTLKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSSTTQGRLDSFF-----TIRR 55
M L W PD +GL K+L D F+EDR+ +L K + + TQ RLD+FF I++
Sbjct: 310 MNLNWPVPDYEGLKKFLVDDNQFSEDRVEKYISRLKKCKQAKTQMRLDTFFKTTKPAIKK 369
Query: 56 EEK 58
E+K
Sbjct: 370 EDK 372
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/71 (39%), Positives = 39/71 (54%), Gaps = 5/71 (7%)
Query: 399 ALAKAQEQGKLKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSTTTQGRLDSFF- 457
A A +E L W PD +GL K+L D F+EDR+ +L K + TQ RLD+FF
Sbjct: 302 APAVERENMNLNWPVPDYEGLKKFLVDDNQFSEDRVEKYISRLKKCKQAKTQMRLDTFFK 361
Query: 458 ----TIRREEK 464
I++E+K
Sbjct: 362 TTKPAIKKEDK 372
>gi|221222240|gb|ACM09781.1| Flap endonuclease 1-B [Salmo salar]
Length = 109
Score = 134 bits (337), Expect = 1e-28, Method: Composition-based stats.
Identities = 63/97 (64%), Positives = 77/97 (79%), Gaps = 7/97 (7%)
Query: 304 ELVADVAPSSIRES-------RKICIDASMSLYQFLIAVRSEGNQLMSVDGEPTSHLMGT 356
+L+AD APS+I+E RKI IDASM +YQFL+AVR +GN L + +GE TSHLMG
Sbjct: 8 KLIADQAPSAIKEQDIKNYFGRKIAIDASMCMYQFLVAVRQDGNVLQNENGETTSHLMGM 67
Query: 357 FYRTIRLVEHGLKPIYVFDGKPPTLKSGELNKRMEKR 393
FYRTIR++EHG+KP+YVFDGKPP LKSGEL KR E+R
Sbjct: 68 FYRTIRMLEHGIKPVYVFDGKPPQLKSGELEKRGERR 104
>gi|294893362|ref|XP_002774434.1| flap exonuclease, putative [Perkinsus marinus ATCC 50983]
gi|239879827|gb|EER06250.1| flap exonuclease, putative [Perkinsus marinus ATCC 50983]
Length = 407
Score = 134 bits (336), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 68/154 (44%), Positives = 94/154 (61%), Gaps = 12/154 (7%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHM--TFSEARK-------LPVQ 111
AP EAEA CAA+V+ GK Y T+DMD LTFGS + ++++ T ++ PV
Sbjct: 159 APEEAEATCAALVRYGKCYGAVTDDMDVLTFGSPVQIKNLFNTLGSGQQGSAGKTTKPVY 218
Query: 112 EFHLEKVLEGMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDT 171
E L VLE +++S ++FID CI+ GCDY ++IRGIGP A +LI EH+SIE +L++ID
Sbjct: 219 EMSLSTVLEQLDVSMDQFIDFCIMCGCDYLETIRGIGPNNAFKLIVEHKSIEGVLDHIDK 278
Query: 172 KKYTVPEGWL---YKEARELFRHPEVADPETIEF 202
K+ VPE W YK RE F + E +
Sbjct: 279 TKFAVPESWAAGDYKTVREYFLDAPAVERENMNL 312
Score = 104 bits (260), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 53/116 (45%), Positives = 77/116 (66%), Gaps = 11/116 (9%)
Query: 303 IELVADVAPSSIRE-------SRKICIDASMSLYQFLIAVRSEGNQ----LMSVDGEPTS 351
+ V++ AP ++ E R + +DASM LYQF+IAVR G+ L + GE TS
Sbjct: 7 FKFVSENAPKAVSEQKMENYTGRSLAVDASMCLYQFVIAVRLGGDNQHANLTNAAGEVTS 66
Query: 352 HLMGTFYRTIRLVEHGLKPIYVFDGKPPTLKSGELNKRMEKREDAQKALAKAQEQG 407
H+ G RT+R++E G+KP+YVFDGKPP+LK+GEL KR E ++ A++ L +A E+G
Sbjct: 67 HISGMVTRTLRMMEAGIKPVYVFDGKPPSLKTGELAKRREVKKKAEEDLKEAIEKG 122
Score = 83.6 bits (205), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 38/77 (49%), Positives = 49/77 (63%), Gaps = 3/77 (3%)
Query: 232 FIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGWL---YKEA 288
FID CI+ GCDY ++IRGIGP A +LI EH+SIE +L++ID K+ VPE W YK
Sbjct: 236 FIDFCIMCGCDYLETIRGIGPNNAFKLIVEHKSIEGVLDHIDKTKFAVPESWAAGDYKTV 295
Query: 289 RELFRHPEIADPETIEL 305
RE F + E + L
Sbjct: 296 REYFLDAPAVERENMNL 312
Score = 51.6 bits (122), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/63 (41%), Positives = 37/63 (58%), Gaps = 5/63 (7%)
Query: 1 MTLKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSSTTQGRLDSFF-----TIRR 55
M L W PD +GL K+L D F+EDR+ +L K + + TQ RLD+FF I++
Sbjct: 310 MNLNWPVPDYEGLKKFLVDDNQFSEDRVEKYISRLKKCKQAKTQMRLDTFFKTTKPAIKK 369
Query: 56 EEK 58
E+K
Sbjct: 370 EDK 372
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/71 (39%), Positives = 39/71 (54%), Gaps = 5/71 (7%)
Query: 399 ALAKAQEQGKLKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSTTTQGRLDSFF- 457
A A +E L W PD +GL K+L D F+EDR+ +L K + TQ RLD+FF
Sbjct: 302 APAVERENMNLNWPVPDYEGLKKFLVDDNQFSEDRVEKYISRLKKCKQAKTQMRLDTFFK 361
Query: 458 ----TIRREEK 464
I++E+K
Sbjct: 362 TTKPAIKKEDK 372
>gi|402468038|gb|EJW03248.1| hypothetical protein EDEG_00228 [Edhazardia aedis USNM 41457]
Length = 362
Score = 133 bits (334), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 72/151 (47%), Positives = 102/151 (67%), Gaps = 11/151 (7%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVLE 120
AP EAEA A + G V A ATEDMDALTFG+ ILLR++ +E +KLP+ E++L+++L+
Sbjct: 156 APSEAEAYAAYLCIKGVVDAVATEDMDALTFGAPILLRNLNAAENKKLPIVEYNLKEILK 215
Query: 121 GMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKIL--ENIDTKKYTVPE 178
++++H +FID+CI+LGCDY +RG GPKRA E+I +H+ IE IL E I + + T E
Sbjct: 216 ELKINHNQFIDVCIMLGCDYVKPLRGFGPKRAYEMILKHKDIETILEKEKIKSLESTKNE 275
Query: 179 G-------WLYKEARELFRH-PEVADPETIE 201
W ++EAR +F P V+D E IE
Sbjct: 276 NSSEADDIWNFEEARIIFNELPHVSD-EIIE 305
Score = 111 bits (278), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 56/91 (61%), Positives = 68/91 (74%), Gaps = 1/91 (1%)
Query: 318 RKICIDASMSLYQFLIAVRSEGNQLMSVDGEPTSHLMGTFYRTIRLVEHGLKPIYVFDGK 377
++I IDAS+SLYQFLIAVRS+G L + G+ TSHL+GTFYRTIR+V G+KP++VFDG
Sbjct: 29 QRIAIDASLSLYQFLIAVRSDGAGLTTDSGDTTSHLIGTFYRTIRIVTSGIKPLFVFDGL 88
Query: 378 PPTLK-SGELNKRMEKREDAQKALAKAQEQG 407
PP LK S EL KR EKR+ A K A E G
Sbjct: 89 PPELKLSHELEKRKEKRDAAAKEYEMALETG 119
Score = 66.2 bits (160), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 43/112 (38%), Positives = 64/112 (57%), Gaps = 20/112 (17%)
Query: 232 FIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKIL--ENIDTKKYTVPEG------- 282
FID+CI+LGCDY +RG GPKRA E+I +H+ IE IL E I + + T E
Sbjct: 224 FIDVCIMLGCDYVKPLRGFGPKRAYEMILKHKDIETILEKEKIKSLESTKNENSSEADDI 283
Query: 283 WLYKEARELFRH-PEIADPETIELVADVAPSSIRESRKICIDASMSLYQFLI 333
W ++EAR +F P ++D E IE + ++ + KI +D + +FL+
Sbjct: 284 WNFEEARIIFNELPHVSD-EIIEKMPEI------DFDKIVVD---DVVKFLV 325
>gi|209879882|ref|XP_002141381.1| Flap endonuclease 1 [Cryptosporidium muris RN66]
gi|317374886|sp|B6AFP1.1|FEN1_CRYMR RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|209556987|gb|EEA07032.1| Flap endonuclease 1, putative [Cryptosporidium muris RN66]
Length = 472
Score = 133 bits (334), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 65/142 (45%), Positives = 91/142 (64%), Gaps = 8/142 (5%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEAR--------KLPVQE 112
A EAEAQCA + K G VY ATED D+LTFG+ +++RH+ FS+ + K +Q
Sbjct: 157 ATSEAEAQCAELCKEGLVYGVATEDADSLTFGTPLVIRHLNFSDGKFSDSKGNSKNSLQV 216
Query: 113 FHLEKVLEGMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTK 172
L VL + LS ++F+DLCIL GCDYC +IRGIG A +L+K+H+ IE I+ +D
Sbjct: 217 IKLSTVLSDLGLSMQQFVDLCILCGCDYCGTIRGIGALTAYKLLKKHKDIETIINELDKN 276
Query: 173 KYTVPEGWLYKEARELFRHPEV 194
K+ +P + Y + RELF +P V
Sbjct: 277 KHPLPMSFDYIKVRELFTNPNV 298
Score = 109 bits (273), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 60/113 (53%), Positives = 76/113 (67%), Gaps = 11/113 (9%)
Query: 305 LVADVAPSSIRE-------SRKICIDASMSLYQFLIAVRSEGNQ---LMSVDGEPTSHLM 354
+ D AP SI++ R I IDASM +YQFL A+R EG+Q L + GE TSH+
Sbjct: 9 FLVDNAPKSIQQQSIDSLIGRIIAIDASMWMYQFLAAIR-EGSQWGNLTNEAGESTSHIS 67
Query: 355 GTFYRTIRLVEHGLKPIYVFDGKPPTLKSGELNKRMEKREDAQKALAKAQEQG 407
G RTIRL+E G+KP++VFDG+PP LK EL KR E+RE AQ+ L KAQE+G
Sbjct: 68 GMLSRTIRLLEAGIKPVFVFDGEPPELKMEELMKRKERREKAQQELEKAQEEG 120
Score = 75.5 bits (184), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 32/69 (46%), Positives = 47/69 (68%)
Query: 229 LYSFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGWLYKEA 288
+ F+DLCIL GCDYC +IRGIG A +L+K+H+ IE I+ +D K+ +P + Y +
Sbjct: 230 MQQFVDLCILCGCDYCGTIRGIGALTAYKLLKKHKDIETIINELDKNKHPLPMSFDYIKV 289
Query: 289 RELFRHPEI 297
RELF +P +
Sbjct: 290 RELFTNPNV 298
Score = 52.0 bits (123), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 25/61 (40%), Positives = 42/61 (68%), Gaps = 1/61 (1%)
Query: 400 LAKAQE-QGKLKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSTTTQGRLDSFFT 458
+ KA+E + KLKW++P+ +GL ++L +NF+E R+ N ++ K++ T Q LDSFFT
Sbjct: 298 VIKAKEFRDKLKWTNPNLEGLSEWLIKQQNFSEVRVANYCTRIKKSKGKTAQTSLDSFFT 357
Query: 459 I 459
+
Sbjct: 358 L 358
Score = 50.1 bits (118), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 35/51 (68%)
Query: 3 LKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSSTTQGRLDSFFTI 53
LKW++P+ +GL ++L +NF+E R+ N ++ K++ T Q LDSFFT+
Sbjct: 308 LKWTNPNLEGLSEWLIKQQNFSEVRVANYCTRIKKSKGKTAQTSLDSFFTL 358
>gi|387595247|gb|EIJ92872.1| flap endonuclease 1-B [Nematocida parisii ERTm1]
Length = 342
Score = 133 bits (334), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 71/141 (50%), Positives = 91/141 (64%), Gaps = 9/141 (6%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEA---RKLPVQEFHLEK 117
AP EAE CAA+ G V +EDMD+L FG ILLR+ F A +KL V E LE
Sbjct: 152 APNEAEGFCAALNICGAVNGVVSEDMDSLAFGGKILLRN--FFPALMKKKLSVMEISLEM 209
Query: 118 VLEGMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVP 177
VL+ L EFID+CILLGCDYC ++G+GPK+ +L++EHRSIEK+LEN + T+P
Sbjct: 210 VLKQTGLDQSEFIDMCILLGCDYCQKLKGMGPKKVYDLVQEHRSIEKLLEN---GRVTMP 266
Query: 178 -EGWLYKEARELFRHPEVADP 197
EGW Y +ARE+F + P
Sbjct: 267 EEGWPYIQAREIFTSQDAGKP 287
Score = 97.8 bits (242), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 48/107 (44%), Positives = 71/107 (66%), Gaps = 7/107 (6%)
Query: 304 ELVADVAPSSIRESR-------KICIDASMSLYQFLIAVRSEGNQLMSVDGEPTSHLMGT 356
EL+ + AP SIR ++ K+ IDASM LYQ L+A+R + L + +GE T+H+ G
Sbjct: 8 ELLKEKAPKSIRNTQIEKYRGWKVAIDASMILYQSLVAIRYGMDNLKNKNGETTAHIYGI 67
Query: 357 FYRTIRLVEHGLKPIYVFDGKPPTLKSGELNKRMEKREDAQKALAKA 403
FY+TI L+E G+ P+Y+FDG+PP LK L +R ++E A+K L +A
Sbjct: 68 FYKTINLLEKGIIPVYIFDGQPPELKENTLTERRIRKEQAEKDLVEA 114
Score = 87.4 bits (215), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 41/93 (44%), Positives = 61/93 (65%), Gaps = 8/93 (8%)
Query: 232 FIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVP-EGWLYKEARE 290
FID+CILLGCDYC ++G+GPK+ +L++EHRSIEK+LEN + T+P EGW Y +ARE
Sbjct: 221 FIDMCILLGCDYCQKLKGMGPKKVYDLVQEHRSIEKLLEN---GRVTMPEEGWPYIQARE 277
Query: 291 LFRHPEIADPETIELVADVAPSSIRESRKICID 323
+F + P L +P ++E + ++
Sbjct: 278 IFTSQDAGKPPVFSL----SPPDVKEILQFLVE 306
>gi|387592620|gb|EIJ87644.1| flap endonuclease 1-B [Nematocida parisii ERTm3]
Length = 371
Score = 132 bits (333), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 71/141 (50%), Positives = 91/141 (64%), Gaps = 9/141 (6%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEA---RKLPVQEFHLEK 117
AP EAE CAA+ G V +EDMD+L FG ILLR+ F A +KL V E LE
Sbjct: 152 APNEAEGFCAALNICGAVNGVVSEDMDSLAFGGKILLRN--FFPALMKKKLSVMEISLEM 209
Query: 118 VLEGMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVP 177
VL+ L EFID+CILLGCDYC ++G+GPK+ +L++EHRSIEK+LEN + T+P
Sbjct: 210 VLKQTGLDQSEFIDMCILLGCDYCQKLKGMGPKKVYDLVQEHRSIEKLLEN---GRVTMP 266
Query: 178 -EGWLYKEARELFRHPEVADP 197
EGW Y +ARE+F + P
Sbjct: 267 EEGWPYIQAREIFTSQDAGKP 287
Score = 97.8 bits (242), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 51/115 (44%), Positives = 76/115 (66%), Gaps = 8/115 (6%)
Query: 304 ELVADVAPSSIRESR-------KICIDASMSLYQFLIAVRSEGNQLMSVDGEPTSHLMGT 356
EL+ + AP SIR ++ K+ IDASM LYQ L+A+R + L + +GE T+H+ G
Sbjct: 8 ELLKEKAPKSIRNTQIEKYRGWKVAIDASMILYQSLVAIRYGMDNLKNKNGETTAHIYGI 67
Query: 357 FYRTIRLVEHGLKPIYVFDGKPPTLKSGELNKRMEKREDAQKALAKA-QEQGKLK 410
FY+TI L+E G+ P+Y+FDG+PP LK L +R ++E A+K L +A E+ K+K
Sbjct: 68 FYKTINLLEKGIIPVYIFDGQPPELKENTLTERRIRKEQAEKDLVEAVTEEEKVK 122
Score = 87.4 bits (215), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 41/93 (44%), Positives = 61/93 (65%), Gaps = 8/93 (8%)
Query: 232 FIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVP-EGWLYKEARE 290
FID+CILLGCDYC ++G+GPK+ +L++EHRSIEK+LEN + T+P EGW Y +ARE
Sbjct: 221 FIDMCILLGCDYCQKLKGMGPKKVYDLVQEHRSIEKLLEN---GRVTMPEEGWPYIQARE 277
Query: 291 LFRHPEIADPETIELVADVAPSSIRESRKICID 323
+F + P L +P ++E + ++
Sbjct: 278 IFTSQDAGKPPVFSL----SPPDVKEILQFLVE 306
>gi|413932542|gb|AFW67093.1| hypothetical protein ZEAMMB73_718764 [Zea mays]
Length = 294
Score = 132 bits (332), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 62/116 (53%), Positives = 89/116 (76%)
Query: 60 KAPCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVL 119
+AP EAEAQCAA+ + +VYA A+EDMD LTFG+ LRH+T +K PV EF + KVL
Sbjct: 155 EAPGEAEAQCAALCENHQVYAVASEDMDTLTFGARRFLRHLTDLGYKKSPVTEFDVSKVL 214
Query: 120 EGMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYT 175
E + L+ ++FIDLCIL GCDYC++IRGIG +RA++LI++H IE++L+N++ + +
Sbjct: 215 EELGLTMDQFIDLCILSGCDYCENIRGIGGQRALKLIRQHGCIEEVLQNLNQTRNS 270
Score = 99.0 bits (245), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 55/127 (43%), Positives = 81/127 (63%), Gaps = 15/127 (11%)
Query: 304 ELVADVAPSSIRE-------SRKICIDASMSLYQFLIAVRSEGNQLMSVD-GEPTSHLMG 355
+L+A AP++ + R I +DAS+S+YQFL V +G++L++ + GE TSHL G
Sbjct: 8 KLLAQHAPTAAVQRRVEDYRGRVIAVDASVSIYQFLAVVGRKGSELLTNEAGEITSHLQG 67
Query: 356 TFYRTIRLVEHGLKPIYVFDGKPPTLKSGELNKRMEKREDAQKALAKAQEQGKLKWSDPD 415
RTIR++E G+KP++VFDG+PP +K EL KR KR+DA K L +A E G D
Sbjct: 68 MLNRTIRMLEAGIKPVFVFDGEPPEMKKKELAKRSLKRDDAIKDLNRAMEIG-------D 120
Query: 416 EDGLVKY 422
E+ + K+
Sbjct: 121 ENAIEKF 127
Score = 64.7 bits (156), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 26/47 (55%), Positives = 40/47 (85%)
Query: 232 FIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYT 278
FIDLCIL GCDYC++IRGIG +RA++LI++H IE++L+N++ + +
Sbjct: 224 FIDLCILSGCDYCENIRGIGGQRALKLIRQHGCIEEVLQNLNQTRNS 270
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/29 (68%), Positives = 27/29 (93%)
Query: 201 EFIDLCILLGCDYCDSIRGIGPKRAIELL 229
+FIDLCIL GCDYC++IRGIG +RA++L+
Sbjct: 223 QFIDLCILSGCDYCENIRGIGGQRALKLI 251
>gi|76155152|gb|AAX26398.2| SJCHGC04804 protein [Schistosoma japonicum]
Length = 130
Score = 131 bits (329), Expect = 1e-27, Method: Composition-based stats.
Identities = 59/93 (63%), Positives = 78/93 (83%)
Query: 318 RKICIDASMSLYQFLIAVRSEGNQLMSVDGEPTSHLMGTFYRTIRLVEHGLKPIYVFDGK 377
RK+ IDASMS+YQFLIAVR EGN LM+ +GE TSHLMG FYRTIR++E G+KP+YVF+GK
Sbjct: 29 RKVAIDASMSIYQFLIAVRQEGNTLMNAEGESTSHLMGMFYRTIRMIESGIKPVYVFEGK 88
Query: 378 PPTLKSGELNKRMEKREDAQKALAKAQEQGKLK 410
PP++K+GEL KR ++R ++ K LAKA+ + L+
Sbjct: 89 PPSMKAGELAKRADRRIESTKELAKAEAEEDLE 121
>gi|164662529|ref|XP_001732386.1| hypothetical protein MGL_0161 [Malassezia globosa CBS 7966]
gi|159106289|gb|EDP45172.1| hypothetical protein MGL_0161 [Malassezia globosa CBS 7966]
Length = 150
Score = 130 bits (328), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 65/143 (45%), Positives = 93/143 (65%), Gaps = 27/143 (18%)
Query: 86 MDALTFGSNILLRHMTFSEARKLPVQEFHLEKVLEGMELSHEEFIDLCILLGCDYCDSIR 145
MD LTFG+ ILL+++T SE +KLPV E HL K LE +++ E+F+DLC+LLGCDY D +R
Sbjct: 1 MDTLTFGAPILLKNLTASEQKKLPVTEVHLGKALEELDMPMEQFVDLCMLLGCDYLDPVR 60
Query: 146 GIGPKRAIELIKEHRSIEKILENI----DTKK-----------------------YTVPE 178
G+GPK+A++LI++HR++E+ILE++ D KK VP+
Sbjct: 61 GVGPKKALKLIQDHRTLERILEHLKQADDAKKAKASDAHGSDDDEATSIKKRPGGIQVPD 120
Query: 179 GWLYKEARELFRHPEVADPETIE 201
W ++EARELF PEV D T++
Sbjct: 121 FWPFQEARELFLTPEVQDGHTVQ 143
Score = 84.7 bits (208), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 41/101 (40%), Positives = 62/101 (61%), Gaps = 27/101 (26%)
Query: 232 FIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENI----DTKK----------- 276
F+DLC+LLGCDY D +RG+GPK+A++LI++HR++E+ILE++ D KK
Sbjct: 44 FVDLCMLLGCDYLDPVRGVGPKKALKLIQDHRTLERILEHLKQADDAKKAKASDAHGSDD 103
Query: 277 ------------YTVPEGWLYKEARELFRHPEIADPETIEL 305
VP+ W ++EARELF PE+ D T+++
Sbjct: 104 DEATSIKKRPGGIQVPDFWPFQEARELFLTPEVQDGHTVQV 144
>gi|67610024|ref|XP_667077.1| flap endonuclease 1 [Cryptosporidium hominis TU502]
gi|54658174|gb|EAL36849.1| flap endonuclease 1 [Cryptosporidium hominis]
Length = 454
Score = 130 bits (326), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 65/146 (44%), Positives = 94/146 (64%), Gaps = 11/146 (7%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEA-----------RKLP 109
AP EAEAQCA + K G VY TED D+LTFG+ I ++ + FSE+ +K
Sbjct: 121 APSEAEAQCAELCKDGLVYGVVTEDADSLTFGTPIQIKQLNFSESSNKISDKSPSKQKNG 180
Query: 110 VQEFHLEKVLEGMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENI 169
+Q L +L ++++ ++FIDLCIL GCDYC +IRGIG A +L+K++ +IE IL+NI
Sbjct: 181 MQIIKLSLILSELDINMDQFIDLCILSGCDYCGTIRGIGTSTAYKLLKKYHNIESILKNI 240
Query: 170 DTKKYTVPEGWLYKEARELFRHPEVA 195
D K VP + + + RELF++P V+
Sbjct: 241 DQTKNPVPGNFDFSKVRELFKNPLVS 266
Score = 89.4 bits (220), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 46/85 (54%), Positives = 57/85 (67%), Gaps = 4/85 (4%)
Query: 326 MSLYQFLIAVRSEGNQ---LMSVDGEPTSHLMGTFYRTIRLVEHGLKPIYVFDGKPPTLK 382
M +YQFL A+R EG+Q L + GE TSH+ G RT RL+E G+KP++VFDG PP +K
Sbjct: 1 MWIYQFLAAIR-EGSQWGNLTNSSGESTSHINGMLSRTTRLLEAGIKPVFVFDGAPPEMK 59
Query: 383 SGELNKRMEKREDAQKALAKAQEQG 407
EL KR E+RE A L KAQE G
Sbjct: 60 KDELTKRDERREKALAELEKAQEVG 84
Score = 79.7 bits (195), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 35/67 (52%), Positives = 49/67 (73%)
Query: 232 FIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGWLYKEAREL 291
FIDLCIL GCDYC +IRGIG A +L+K++ +IE IL+NID K VP + + + REL
Sbjct: 200 FIDLCILSGCDYCGTIRGIGTSTAYKLLKKYHNIESILKNIDQTKNPVPGNFDFSKVREL 259
Query: 292 FRHPEIA 298
F++P ++
Sbjct: 260 FKNPLVS 266
Score = 40.0 bits (92), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 38/59 (64%)
Query: 409 LKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSTTTQGRLDSFFTIRREEKRKS 467
+KWS+P + L+++L ++NF E R+ + +++ K+++ T+Q LD FF E++ +
Sbjct: 275 IKWSNPKYEELMEWLIKEQNFNEARVISYCERIKKSKNKTSQTCLDGFFKSASNERKNT 333
Score = 39.7 bits (91), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 37/59 (62%)
Query: 3 LKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSSTTQGRLDSFFTIRREEKRKA 61
+KWS+P + L+++L ++NF E R+ + +++ K+++ T+Q LD FF E++
Sbjct: 275 IKWSNPKYEELMEWLIKEQNFNEARVISYCERIKKSKNKTSQTCLDGFFKSASNERKNT 333
>gi|126653087|ref|XP_001388383.1| flap endonuclease 1 [Cryptosporidium parvum Iowa II]
gi|317374887|sp|A3FPN7.1|FEN1_CRYPI RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|126117476|gb|EAZ51576.1| flap endonuclease 1 [Cryptosporidium parvum Iowa II]
Length = 490
Score = 129 bits (325), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 64/146 (43%), Positives = 94/146 (64%), Gaps = 11/146 (7%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEA-----------RKLP 109
AP EAEAQCA + K G VY TED D+LTFG+ I ++ + FSE+ +K
Sbjct: 157 APSEAEAQCAELCKDGLVYGVVTEDADSLTFGTPIQIKQLNFSESSNKITDKSPSKQKNG 216
Query: 110 VQEFHLEKVLEGMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENI 169
+Q L +L ++++ ++FIDLCIL GCDYC +IRGIG A +L+K++ +IE IL+NI
Sbjct: 217 MQIIKLSLILSELDINMDQFIDLCILSGCDYCGTIRGIGTSTAYKLLKKYHNIESILKNI 276
Query: 170 DTKKYTVPEGWLYKEARELFRHPEVA 195
D K +P + + + RELF++P V+
Sbjct: 277 DQTKNPIPGNFDFSKVRELFKNPLVS 302
Score = 104 bits (259), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 56/114 (49%), Positives = 74/114 (64%), Gaps = 11/114 (9%)
Query: 304 ELVADVAPSSIRE-------SRKICIDASMSLYQFLIAVRSEGNQ---LMSVDGEPTSHL 353
+ +AD AP SI++ +++ IDASM +YQFL A+R EG+Q L + GE TSH+
Sbjct: 8 KFLADNAPKSIQQQGIGSLLGKRVAIDASMWIYQFLAAIR-EGSQWGNLTNSSGESTSHI 66
Query: 354 MGTFYRTIRLVEHGLKPIYVFDGKPPTLKSGELNKRMEKREDAQKALAKAQEQG 407
G RT RL+E G+KP++VFDG PP +K EL KR E+RE A L KAQE G
Sbjct: 67 NGMLSRTTRLLEAGIKPVFVFDGAPPEMKKDELTKRDERREKALAELEKAQEIG 120
Score = 79.3 bits (194), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 34/67 (50%), Positives = 49/67 (73%)
Query: 232 FIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGWLYKEAREL 291
FIDLCIL GCDYC +IRGIG A +L+K++ +IE IL+NID K +P + + + REL
Sbjct: 236 FIDLCILSGCDYCGTIRGIGTSTAYKLLKKYHNIESILKNIDQTKNPIPGNFDFSKVREL 295
Query: 292 FRHPEIA 298
F++P ++
Sbjct: 296 FKNPLVS 302
Score = 42.0 bits (97), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 38/59 (64%)
Query: 409 LKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSTTTQGRLDSFFTIRREEKRKS 467
+KWS+P + L+++L ++NF E R+ + +++ K+++ T+Q LD FF E++ +
Sbjct: 311 IKWSNPKYEELMEWLIKEQNFNEARVNSYCERIKKSKNKTSQTCLDGFFKTASNERKNT 369
Score = 41.6 bits (96), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 37/59 (62%)
Query: 3 LKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSSTTQGRLDSFFTIRREEKRKA 61
+KWS+P + L+++L ++NF E R+ + +++ K+++ T+Q LD FF E++
Sbjct: 311 IKWSNPKYEELMEWLIKEQNFNEARVNSYCERIKKSKNKTSQTCLDGFFKTASNERKNT 369
>gi|170119612|ref|XP_001890929.1| predicted protein [Laccaria bicolor S238N-H82]
gi|317374866|sp|B0E412.1|FEN12_LACBS RecName: Full=Flap endonuclease 1-B; Short=FEN-1-B; AltName:
Full=Flap structure-specific endonuclease 1-B
gi|164633979|gb|EDQ98419.1| predicted protein [Laccaria bicolor S238N-H82]
Length = 469
Score = 129 bits (324), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 59/114 (51%), Positives = 83/114 (72%), Gaps = 5/114 (4%)
Query: 61 APCEAEAQCAAMVKAGKVY-----ATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHL 115
AP EAEAQCA + + GKVY A +EDMD LTF + IL RH+TFSEA+K P+ E +L
Sbjct: 154 APSEAEAQCAELARGGKVYIALYYAAGSEDMDTLTFNAPILFRHLTFSEAKKQPISEINL 213
Query: 116 EKVLEGMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENI 169
++ LEG S FIDLCILLGCDY + I+G+GPK A++LI+E+ ++ +++++
Sbjct: 214 KEALEGPLYSFPTFIDLCILLGCDYLEPIKGVGPKSALKLIREYGGLKGVVKHL 267
Score = 107 bits (268), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 52/92 (56%), Positives = 70/92 (76%), Gaps = 6/92 (6%)
Query: 305 LVADVAPSSIRE-----SRKICIDASMSLYQFLIAVRSEGNQLMSVD-GEPTSHLMGTFY 358
L++ AP +I+E RK+ IDASMS+YQFLIAVR + +L++ D GE T +LMG FY
Sbjct: 9 LLSQHAPKAIKEIKTLFGRKVAIDASMSIYQFLIAVRQKDGELLTNDAGETTRYLMGLFY 68
Query: 359 RTIRLVEHGLKPIYVFDGKPPTLKSGELNKRM 390
RT+R+VE+G+KP Y+FDGKPP LK G L+KR+
Sbjct: 69 RTLRIVENGIKPAYIFDGKPPELKKGVLSKRL 100
Score = 74.7 bits (182), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 32/61 (52%), Positives = 45/61 (73%)
Query: 3 LKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSSTTQGRLDSFFTIRREEKRKAP 62
L+W++PD DGLV++L +K F EDR+R GA+KL K +S QGRLD FF+++ +EK AP
Sbjct: 372 LEWTNPDVDGLVQFLVNEKGFNEDRVRKGAEKLQKFLNSKQQGRLDGFFSVKPKEKAAAP 431
Query: 63 C 63
Sbjct: 432 A 432
Score = 69.7 bits (169), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 29/56 (51%), Positives = 43/56 (76%)
Query: 409 LKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSTTTQGRLDSFFTIRREEK 464
L+W++PD DGLV++L +K F EDR+R GA+KL K ++ QGRLD FF+++ +EK
Sbjct: 372 LEWTNPDVDGLVQFLVNEKGFNEDRVRKGAEKLQKFLNSKQQGRLDGFFSVKPKEK 427
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/60 (48%), Positives = 44/60 (73%), Gaps = 4/60 (6%)
Query: 217 IRGIGPKRAIE-LLYSF---IDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENI 272
I I K A+E LYSF IDLCILLGCDY + I+G+GPK A++LI+E+ ++ +++++
Sbjct: 208 ISEINLKEALEGPLYSFPTFIDLCILLGCDYLEPIKGVGPKSALKLIREYGGLKGVVKHL 267
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 44/79 (55%), Gaps = 10/79 (12%)
Query: 167 ENIDTKKYTVPEGWLYKEARELFRHP--EVADPETIE--------FIDLCILLGCDYCDS 216
E++DT + P + + E + P E+ E +E FIDLCILLGCDY +
Sbjct: 182 EDMDTLTFNAPILFRHLTFSEAKKQPISEINLKEALEGPLYSFPTFIDLCILLGCDYLEP 241
Query: 217 IRGIGPKRAIELLYSFIDL 235
I+G+GPK A++L+ + L
Sbjct: 242 IKGVGPKSALKLIREYGGL 260
>gi|449016220|dbj|BAM79622.1| probable flap structure-specific endonuclease 1 [Cyanidioschyzon
merolae strain 10D]
Length = 380
Score = 129 bits (324), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 66/147 (44%), Positives = 96/147 (65%), Gaps = 5/147 (3%)
Query: 60 KAPCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHM-----TFSEARKLPVQEFH 114
+AP EAEAQCA + +AG YATA+EDMDALTFG+ +L+R++ + +E + EF
Sbjct: 155 EAPSEAEAQCAVLTRAGLAYATASEDMDALTFGTPLLIRNLFAALASGAERKDRKPSEFS 214
Query: 115 LEKVLEGMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKY 174
L LE + +S ++FID+CIL GCDY +I IGP RA+ L+K+H IE++L ++ +
Sbjct: 215 LAITLEDLGISMDQFIDICILCGCDYTCTIPKIGPYRALMLVKQHGCIEEVLASLRESNH 274
Query: 175 TVPEGWLYKEARELFRHPEVADPETIE 201
+P+ + Y AR LF+ P V D IE
Sbjct: 275 PIPDDFDYLGARGLFKEPHVKDAADIE 301
Score = 114 bits (284), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 60/116 (51%), Positives = 80/116 (68%), Gaps = 8/116 (6%)
Query: 304 ELVADVAPSSIRE-------SRKICIDASMSLYQFLIAVRS-EGNQLMSVDGEPTSHLMG 355
+L+ D AP + +E R I IDASM +YQFL+AVR+ + L + GE TSHL G
Sbjct: 8 KLIVDHAPRAYKEQDIRALFGRVIAIDASMCIYQFLVAVRTADAANLTNESGEITSHLSG 67
Query: 356 TFYRTIRLVEHGLKPIYVFDGKPPTLKSGELNKRMEKREDAQKALAKAQEQGKLKW 411
FYRTI+L+E G+KPIYVFDGK P LK+ EL KR +RE+ ++A AKA+E+G L+
Sbjct: 68 VFYRTIKLLELGIKPIYVFDGKAPDLKANELAKRRSRREEDEQAAAKAREEGDLEL 123
Score = 69.3 bits (168), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 32/73 (43%), Positives = 47/73 (64%)
Query: 232 FIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGWLYKEAREL 291
FID+CIL GCDY +I IGP RA+ L+K+H IE++L ++ + +P+ + Y AR L
Sbjct: 229 FIDICILCGCDYTCTIPKIGPYRALMLVKQHGCIEEVLASLRESNHPIPDDFDYLGARGL 288
Query: 292 FRHPEIADPETIE 304
F+ P + D IE
Sbjct: 289 FKEPHVKDAADIE 301
Score = 46.2 bits (108), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 36/62 (58%), Gaps = 2/62 (3%)
Query: 3 LKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSS--TTQGRLDSFFTIRREEKRK 60
L+W P+E+GLV++L + +F E +R +++ KA S Q RLD+FF + K+
Sbjct: 304 LEWHAPNEEGLVQFLVQENSFNEQLVRKAVERMTKALRSGVANQSRLDNFFKPKTLPKKH 363
Query: 61 AP 62
P
Sbjct: 364 EP 365
Score = 44.3 bits (103), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 31/51 (60%), Gaps = 2/51 (3%)
Query: 409 LKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKA--RSTTTQGRLDSFF 457
L+W P+E+GLV++L + +F E +R +++ KA Q RLD+FF
Sbjct: 304 LEWHAPNEEGLVQFLVQENSFNEQLVRKAVERMTKALRSGVANQSRLDNFF 354
>gi|429962587|gb|ELA42131.1| hypothetical protein VICG_00772 [Vittaforma corneae ATCC 50505]
Length = 344
Score = 129 bits (324), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 67/144 (46%), Positives = 97/144 (67%), Gaps = 4/144 (2%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVLE 120
A E+EA C+ + K G V A ATEDMDAL FG+ ILLR+M S+++ L + E++L +L+
Sbjct: 154 AESESEAYCSLLCKRGVVKAVATEDMDALCFGAPILLRNMNASQSKNLDIDEYNLGTILK 213
Query: 121 GMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGW 180
+EL+ FIDLCIL+GCDYCD+I+G+G KRA +LIK++ IE I+E ++ VP+ +
Sbjct: 214 ELELTMGSFIDLCILMGCDYCDTIKGVGHKRAYDLIKKYGCIESIIE---SETPEVPDNF 270
Query: 181 LYKEARELFRH-PEVADPETIEFI 203
YK AR +F V + E E +
Sbjct: 271 DYKAARLIFNELSSVGEAENFEIM 294
Score = 103 bits (256), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 56/105 (53%), Positives = 71/105 (67%), Gaps = 1/105 (0%)
Query: 317 SRKICIDASMSLYQFLIAVRSEGNQLMSVDGEPTSHLMGTFYRTIRLVEHGLKPIYVFDG 376
S KI IDAS+ LYQFLIAVR++G L D TSHL+G FYRTIR++E G+ P+YVFDG
Sbjct: 28 STKIAIDASLCLYQFLIAVRTDGANLGYEDA-TTSHLVGMFYRTIRIIESGIIPVYVFDG 86
Query: 377 KPPTLKSGELNKRMEKREDAQKALAKAQEQGKLKWSDPDEDGLVK 421
K P +K+ EL KR E+R A+K L +A+ + K D E VK
Sbjct: 87 KAPPIKAIELQKRNERRLKAEKMLEQAKLEEDKKEMDKHEKRKVK 131
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 37/79 (46%), Positives = 54/79 (68%), Gaps = 4/79 (5%)
Query: 231 SFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGWLYKEARE 290
SFIDLCIL+GCDYCD+I+G+G KRA +LIK++ IE I+E ++ VP+ + YK AR
Sbjct: 221 SFIDLCILMGCDYCDTIKGVGHKRAYDLIKKYGCIESIIE---SETPEVPDNFDYKAARL 277
Query: 291 LFRH-PEIADPETIELVAD 308
+F + + E E++ D
Sbjct: 278 IFNELSSVGEAENFEIMYD 296
Score = 44.7 bits (104), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 34/53 (64%)
Query: 405 EQGKLKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSTTTQGRLDSFF 457
E ++ + D++GLV++L +K F E R+ NG +K++K+ Q +LD+FF
Sbjct: 289 ENFEIMYDQLDKEGLVQFLVKEKGFDEVRVTNGIEKIIKSSKRGNQTKLDAFF 341
Score = 43.9 bits (102), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 32/49 (65%)
Query: 3 LKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSSTTQGRLDSFF 51
+ + D++GLV++L +K F E R+ NG +K++K+ Q +LD+FF
Sbjct: 293 IMYDQLDKEGLVQFLVKEKGFDEVRVTNGIEKIIKSSKRGNQTKLDAFF 341
>gi|209733812|gb|ACI67775.1| Flap endonuclease 1-B [Salmo salar]
Length = 116
Score = 127 bits (319), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 60/92 (65%), Positives = 73/92 (79%), Gaps = 7/92 (7%)
Query: 304 ELVADVAPSSIRE-------SRKICIDASMSLYQFLIAVRSEGNQLMSVDGEPTSHLMGT 356
+L+AD APS+I+E RKI IDASM +YQFL+AVR +GN L + +GE TSHLMG
Sbjct: 8 KLIADQAPSAIKEQDIKNYFGRKIAIDASMCMYQFLVAVRQDGNVLQNENGETTSHLMGM 67
Query: 357 FYRTIRLVEHGLKPIYVFDGKPPTLKSGELNK 388
FYRTIR++EHG+KP+YVFDGKPP LKSGEL K
Sbjct: 68 FYRTIRMLEHGIKPVYVFDGKPPQLKSGELEK 99
>gi|384485605|gb|EIE77785.1| hypothetical protein RO3G_02489 [Rhizopus delemar RA 99-880]
Length = 496
Score = 127 bits (318), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 60/111 (54%), Positives = 84/111 (75%), Gaps = 8/111 (7%)
Query: 305 LVADVAPSSIRE-------SRKICIDASMSLYQFLIAVRS-EGNQLMSVDGEPTSHLMGT 356
L+++ +P +I+ RK+ IDASMS+YQF+IAVR +G L + +GE TSHLMG
Sbjct: 175 LISEHSPEAIKSYEIKNFFGRKVAIDASMSIYQFMIAVRQQDGQVLQNEEGETTSHLMGM 234
Query: 357 FYRTIRLVEHGLKPIYVFDGKPPTLKSGELNKRMEKREDAQKALAKAQEQG 407
FYRT+R+V++G+KP+YVFDGKPPTLKSGEL KR ++E+AQ+ + +A E G
Sbjct: 235 FYRTVRMVDNGIKPVYVFDGKPPTLKSGELAKRKARKEEAQEKMEEANEIG 285
Score = 115 bits (287), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 60/142 (42%), Positives = 84/142 (59%), Gaps = 30/142 (21%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVLE 120
APCEAEAQCA + + GKVYA A+EDMD LTF + ILLRH+TFSEARK+P+ E +LEK L
Sbjct: 322 APCEAEAQCAELARGGKVYAAASEDMDTLTFKAPILLRHLTFSEARKMPIDEVNLEKALA 381
Query: 121 GMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTK-KYTVPEG 179
GM +++ +EH++I++ ++++ + K +P+
Sbjct: 382 GM-----------------------------GLDMDQEHKTIDEAIKHLSQRLKDGIPKE 412
Query: 180 WLYKEARELFRHPEVADPETIE 201
W Y +ARELF PEV IE
Sbjct: 413 WNYADARELFTKPEVTPASEIE 434
Score = 38.9 bits (89), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 39/63 (61%), Gaps = 5/63 (7%)
Query: 246 SIRGIGPKRAIELIKEHRSIEKILENIDTK-KYTVPEGWLYKEARELFRHPEIADPETIE 304
++ G+G +++ +EH++I++ ++++ + K +P+ W Y +ARELF PE+ IE
Sbjct: 379 ALAGMG----LDMDQEHKTIDEAIKHLSQRLKDGIPKEWNYADARELFTKPEVTPASEIE 434
Query: 305 LVA 307
A
Sbjct: 435 ASA 437
>gi|47227957|emb|CAF97586.1| unnamed protein product [Tetraodon nigroviridis]
Length = 176
Score = 126 bits (317), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 60/112 (53%), Positives = 84/112 (75%), Gaps = 2/112 (1%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVLE 120
AP +AEA CA +VK G V A A+EDMD L FG+NIL+R F + V E+ L K+LE
Sbjct: 1 APADAEALCAWLVKEGTVDAVASEDMDTLPFGANILIRQ--FKSKKDGEVIEYSLTKLLE 58
Query: 121 GMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTK 172
++++H+EF+DLCILLGCDYC+ I G+GP+RA+ LI++HR+IE +L +I+ K
Sbjct: 59 RLQINHQEFVDLCILLGCDYCEKICGLGPRRALRLIQKHRTIENVLLHINRK 110
Score = 66.6 bits (161), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 27/44 (61%), Positives = 38/44 (86%)
Query: 232 FIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTK 275
F+DLCILLGCDYC+ I G+GP+RA+ LI++HR+IE +L +I+ K
Sbjct: 67 FVDLCILLGCDYCEKICGLGPRRALRLIQKHRTIENVLLHINRK 110
>gi|442753119|gb|JAA68719.1| Putative flap structure-specific endonuclease 1 [Ixodes ricinus]
Length = 113
Score = 125 bits (314), Expect = 5e-26, Method: Composition-based stats.
Identities = 60/96 (62%), Positives = 73/96 (76%), Gaps = 7/96 (7%)
Query: 304 ELVADVAPSSIRES-------RKICIDASMSLYQFLIAVRSEGNQLMSVDGEPTSHLMGT 356
+++AD APS+I+E RKI IDASM LYQFLIAVR E N L + DGE TSHL+G
Sbjct: 8 KVIADNAPSAIKEGDIKSYFGRKIAIDASMCLYQFLIAVRQENNMLTNSDGETTSHLVGF 67
Query: 357 FYRTIRLVEHGLKPIYVFDGKPPTLKSGELNKRMEK 392
FYRTIR++E+G+KP+YVFDGKPP +KS EL KR K
Sbjct: 68 FYRTIRMIENGIKPVYVFDGKPPGMKSSELEKRQRK 103
>gi|443924990|gb|ELU43928.1| FEN-1 endonuclease [Rhizoctonia solani AG-1 IA]
Length = 532
Score = 125 bits (314), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 62/111 (55%), Positives = 84/111 (75%), Gaps = 8/111 (7%)
Query: 305 LVADVAPSSIRE-------SRKICIDASMSLYQFLIAVRSEGNQLMSVD-GEPTSHLMGT 356
L+++ AP+SI+E RK+ IDASMS+YQFLIAVR + Q+++ + GE TSHLMG
Sbjct: 9 LLSEHAPASIKEHDIKTLFGRKVAIDASMSIYQFLIAVRQQDGQMLTNEAGETTSHLMGF 68
Query: 357 FYRTIRLVEHGLKPIYVFDGKPPTLKSGELNKRMEKREDAQKALAKAQEQG 407
FYRT+R+V+HG+KP YVFDGKPP LKSG L+KR E R+ A++ +A+E G
Sbjct: 69 FYRTLRMVDHGIKPAYVFDGKPPDLKSGVLSKRFEGRQKAKEDGEEAKEVG 119
Score = 110 bits (275), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 57/125 (45%), Positives = 77/125 (61%), Gaps = 14/125 (11%)
Query: 60 KAPCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVL 119
+AP EAEAQCA + + GKVYA +EDMD LTF + +L RH+TFSEA+K P+ E LEK L
Sbjct: 175 QAPSEAEAQCAELARGGKVYAAGSEDMDTLTFNAPVLYRHLTFSEAKKAPISEIVLEKAL 234
Query: 120 EGMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEG 179
EG LG + I+G+GPK A +L++EH S+E++L+ + K E
Sbjct: 235 EG--------------LGMNMEQPIKGVGPKNAFKLMQEHGSLEEVLKVLRAKMAEREEA 280
Query: 180 WLYKE 184
L KE
Sbjct: 281 DLKKE 285
>gi|422295551|gb|EKU22850.1| flap endonuclease-1 [Nannochloropsis gaditana CCMP526]
Length = 193
Score = 124 bits (312), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 66/139 (47%), Positives = 90/139 (64%), Gaps = 14/139 (10%)
Query: 305 LVADVAPSSIRE-------SRKICIDASMSLYQFLIAVR-----SEGNQLMSVDGEPTSH 352
L+AD AP +I+E R + +DASM++YQFLIA+R + +QL + GE TSH
Sbjct: 9 LIADEAPEAIKEHKVEHYNGRTVAVDASMAIYQFLIAIRHGSGGAAASQLTNEAGEVTSH 68
Query: 353 LMGTFYRTIRLVEHGLKPIYVFDGKPPTLKSGELNKRMEKREDAQKALAKAQEQGKLKWS 412
+ G F RTIR++ G+KP++VFDGKPPTLK GEL+KR EKRE A+ L KAQE+ ++
Sbjct: 69 IQGLFNRTIRMLASGIKPVFVFDGKPPTLKGGELDKRREKREKAESELKKAQEEANVEEQ 128
Query: 413 DPDEDGLVKYLCGDKNFAE 431
D LV+ G K A+
Sbjct: 129 DRQSKRLVR--AGKKESAD 145
>gi|56756631|gb|AAW26488.1| SJCHGC07325 protein [Schistosoma japonicum]
Length = 188
Score = 124 bits (311), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 52/95 (54%), Positives = 75/95 (78%)
Query: 108 LPVQEFHLEKVLEGMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILE 167
+ +QEF+L VLEG+ L+ ++F+DLCILLGCDY D+IRGIGPK+A++L+ ++ SI+ +L+
Sbjct: 1 MAIQEFNLASVLEGLSLTMDQFVDLCILLGCDYVDTIRGIGPKKALDLLHKYHSIDCVLK 60
Query: 168 NIDTKKYTVPEGWLYKEARELFRHPEVADPETIEF 202
NID KY VP W Y++A++LF +PEV DP IE
Sbjct: 61 NIDKSKYPVPNDWPYEDAKKLFLNPEVTDPSLIEL 95
Score = 104 bits (260), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 44/77 (57%), Positives = 61/77 (79%)
Query: 232 FIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGWLYKEAREL 291
F+DLCILLGCDY D+IRGIGPK+A++L+ ++ SI+ +L+NID KY VP W Y++A++L
Sbjct: 22 FVDLCILLGCDYVDTIRGIGPKKALDLLHKYHSIDCVLKNIDKSKYPVPNDWPYEDAKKL 81
Query: 292 FRHPEIADPETIELVAD 308
F +PE+ DP IEL D
Sbjct: 82 FLNPEVTDPSLIELKWD 98
Score = 79.7 bits (195), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 38/69 (55%), Positives = 50/69 (72%), Gaps = 4/69 (5%)
Query: 394 EDAQKALAKAQEQG----KLKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSTTT 449
EDA+K + +LKW +PDE+GLV++LC F E+RIRNGAKKL KA++TTT
Sbjct: 76 EDAKKLFLNPEVTDPSLIELKWDEPDEEGLVEFLCHKHGFNEERIRNGAKKLFKAKNTTT 135
Query: 450 QGRLDSFFT 458
QGR+D+FFT
Sbjct: 136 QGRIDNFFT 144
Score = 77.8 bits (190), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 33/50 (66%), Positives = 43/50 (86%)
Query: 3 LKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSSTTQGRLDSFFT 52
LKW +PDE+GLV++LC F E+RIRNGAKKL KA+++TTQGR+D+FFT
Sbjct: 95 LKWDEPDEEGLVEFLCHKHGFNEERIRNGAKKLFKAKNTTTQGRIDNFFT 144
>gi|378754698|gb|EHY64727.1| flap endonuclease 1-B [Nematocida sp. 1 ERTm2]
Length = 342
Score = 123 bits (309), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 67/140 (47%), Positives = 87/140 (62%), Gaps = 7/140 (5%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEA---RKLPVQEFHLEK 117
AP EAE CAA+ A V +EDMD+L FG +LLR+ F A +K+ V E L++
Sbjct: 152 APNEAEGFCAALNIANAVNGVVSEDMDSLAFGGKVLLRN--FFPALMKKKMAVMEISLDE 209
Query: 118 VLEGMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVP 177
VL+ L EFID+CILLGCDYC +G+GPK+ +L++EHRSIEKI+E+ K
Sbjct: 210 VLKQTGLDQAEFIDMCILLGCDYCQKPKGLGPKKVYDLVQEHRSIEKIVES--GKIQPGE 267
Query: 178 EGWLYKEARELFRHPEVADP 197
E W Y EARE+F E P
Sbjct: 268 EDWPYVEAREIFTSQEAGKP 287
Score = 92.0 bits (227), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 49/115 (42%), Positives = 74/115 (64%), Gaps = 8/115 (6%)
Query: 304 ELVADVAPSSIRESR-------KICIDASMSLYQFLIAVRSEGNQLMSVDGEPTSHLMGT 356
EL+ + AP +IR ++ K+ IDASM LYQ L+A+R + L + +GE T+HL G
Sbjct: 8 ELLKEKAPKAIRSTQIEKYRGWKVAIDASMILYQSLVAIRYGMDSLKNKNGETTAHLYGI 67
Query: 357 FYRTIRLVEHGLKPIYVFDGKPPTLKSGELNKRMEKREDAQKALAKAQ-EQGKLK 410
FY+TI L+E G+ P+Y+FDG P LK L +R ++E A++ L +A+ E K+K
Sbjct: 68 FYKTINLIEKGIVPVYIFDGLAPELKENILVERRARKEQAERDLEQAETESEKMK 122
Score = 78.6 bits (192), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 37/74 (50%), Positives = 48/74 (64%), Gaps = 2/74 (2%)
Query: 232 FIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGWLYKEAREL 291
FID+CILLGCDYC +G+GPK+ +L++EHRSIEKI+E+ K E W Y EARE+
Sbjct: 221 FIDMCILLGCDYCQKPKGLGPKKVYDLVQEHRSIEKIVES--GKIQPGEEDWPYVEAREI 278
Query: 292 FRHPEIADPETIEL 305
F E P +
Sbjct: 279 FTSQEAGKPPVFSM 292
>gi|308159723|gb|EFO62244.1| Flap structure-specific endonuclease [Giardia lamblia P15]
Length = 361
Score = 120 bits (302), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 64/141 (45%), Positives = 88/141 (62%), Gaps = 2/141 (1%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVLE 120
A EAEAQC AM K A+ D+D L FGS L+R++ R+ + E +L VL+
Sbjct: 156 AAGEAEAQCVAMAKERLCEGVASSDLDVLAFGSPCLIRNLAQGGDRE--IMEINLNIVLK 213
Query: 121 GMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGW 180
+ S++EF+DLCIL GCDY +S+ GIGPK A +LI +HRSIE++L K W
Sbjct: 214 ELGFSYDEFLDLCILCGCDYANSLEGIGPKTAYKLIVKHRSIEEVLAADQGKLAEKALNW 273
Query: 181 LYKEARELFRHPEVADPETIE 201
Y ARELF++PE+ DP+ I+
Sbjct: 274 PYVRARELFKNPEIIDPKEIK 294
Score = 99.4 bits (246), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 51/115 (44%), Positives = 75/115 (65%), Gaps = 8/115 (6%)
Query: 304 ELVADVAPSSIRE-------SRKICIDASMSLYQFLIAVRS-EGNQLMSVDGEPTSHLMG 355
+L+ +VAP+++ + ++ I IDAS+ LYQF+ + S +G L + GE TSHL+G
Sbjct: 8 KLIEEVAPAAVSKRLIQHYCNKVIAIDASVMLYQFITTITSGDGAALANSSGEVTSHLVG 67
Query: 356 TFYRTIRLVEHGLKPIYVFDGKPPTLKSGELNKRMEKREDAQKALAKAQEQGKLK 410
+ IR+ E G+KPI+VFDGKPP K GEL KR + RE A+ KA+E+G L+
Sbjct: 68 LLAKVIRMAEAGIKPIFVFDGKPPEDKQGELEKRRQAREAAELEQQKAEEEGNLE 122
Score = 82.8 bits (203), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 41/92 (44%), Positives = 57/92 (61%)
Query: 232 FIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGWLYKEAREL 291
F+DLCIL GCDY +S+ GIGPK A +LI +HRSIE++L K W Y AREL
Sbjct: 222 FLDLCILCGCDYANSLEGIGPKTAYKLIVKHRSIEEVLAADQGKLAEKALNWPYVRAREL 281
Query: 292 FRHPEIADPETIELVADVAPSSIRESRKICID 323
F++PEI DP+ I+ P + E+ + ++
Sbjct: 282 FKNPEIIDPKEIKKTLKWKPVNRSEAMQFLVE 313
>gi|253744402|gb|EET00616.1| Flap structure-specific endonuclease [Giardia intestinalis ATCC
50581]
Length = 361
Score = 120 bits (301), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 63/141 (44%), Positives = 88/141 (62%), Gaps = 2/141 (1%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVLE 120
A EAEAQC AM KAG A+ D+D L FGS L+R++ ++ + E +L+ VL
Sbjct: 156 AAGEAEAQCVAMAKAGLCEGVASSDLDVLAFGSPSLIRNL--AQGGDKEIMEINLDTVLN 213
Query: 121 GMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGW 180
+ S++EF+DLCIL GCDY +S+ GIGPK A +LI ++RSIE+ L K W
Sbjct: 214 ELGFSYDEFLDLCILCGCDYANSLEGIGPKTAYKLIVKYRSIEEALAADQGKLAEKAVNW 273
Query: 181 LYKEARELFRHPEVADPETIE 201
Y ARELF++P V +P+ I+
Sbjct: 274 PYARARELFKNPTVINPKEIK 294
Score = 98.6 bits (244), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 50/114 (43%), Positives = 74/114 (64%), Gaps = 8/114 (7%)
Query: 304 ELVADVAPSSIRE-------SRKICIDASMSLYQFLIAVRS-EGNQLMSVDGEPTSHLMG 355
+L+ ++AP+++ + +R I IDAS+ LYQF+ + S +G L + GE TSHL+G
Sbjct: 8 KLIEEIAPAAVSKRLIQHYCNRVIAIDASVMLYQFITTITSGDGTALANSSGEITSHLVG 67
Query: 356 TFYRTIRLVEHGLKPIYVFDGKPPTLKSGELNKRMEKREDAQKALAKAQEQGKL 409
+ R+VE G+KPI+VFDGKPP K GEL KR + RE A+ KA+E+G +
Sbjct: 68 LLSKVTRMVEAGIKPIFVFDGKPPEDKQGELEKRRQAREAAELEQQKAEEEGDI 121
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 35/73 (47%), Positives = 48/73 (65%)
Query: 232 FIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGWLYKEAREL 291
F+DLCIL GCDY +S+ GIGPK A +LI ++RSIE+ L K W Y AREL
Sbjct: 222 FLDLCILCGCDYANSLEGIGPKTAYKLIVKYRSIEEALAADQGKLAEKAVNWPYARAREL 281
Query: 292 FRHPEIADPETIE 304
F++P + +P+ I+
Sbjct: 282 FKNPTVINPKEIK 294
>gi|159118360|ref|XP_001709399.1| Flap structure-specific endonuclease [Giardia lamblia ATCC 50803]
gi|317374902|sp|A8B672.1|FEN1_GIAIC RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|157437515|gb|EDO81725.1| Flap structure-specific endonuclease [Giardia lamblia ATCC 50803]
Length = 361
Score = 119 bits (298), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 64/141 (45%), Positives = 87/141 (61%), Gaps = 2/141 (1%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVLE 120
A EAEAQC AM K A+ D+D L FGS L+R++ R+ + E +L VL+
Sbjct: 156 AAGEAEAQCVAMAKERVCEGVASSDLDVLAFGSPCLIRNLAQGGDRE--IVEINLNTVLK 213
Query: 121 GMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGW 180
+ S++EF+DLCIL GCDY +S+ GIGPK A +LI +HRSIE++L K W
Sbjct: 214 ELGFSYDEFLDLCILCGCDYANSLEGIGPKTAYKLIVKHRSIEEVLAADQGKLAEKALNW 273
Query: 181 LYKEARELFRHPEVADPETIE 201
Y ARELF++P V DP+ I+
Sbjct: 274 PYVRARELFKNPAVIDPKEIK 294
Score = 100 bits (248), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 52/114 (45%), Positives = 74/114 (64%), Gaps = 8/114 (7%)
Query: 304 ELVADVAPSSIRE-------SRKICIDASMSLYQFLIAVRS-EGNQLMSVDGEPTSHLMG 355
+L+ +VAP+++ + ++ I IDAS+ LYQF+ + S +G L + GE TSHL+G
Sbjct: 8 KLIEEVAPAAVSKRLIQHYCNKVIAIDASVMLYQFITTITSGDGTALANSSGEVTSHLVG 67
Query: 356 TFYRTIRLVEHGLKPIYVFDGKPPTLKSGELNKRMEKREDAQKALAKAQEQGKL 409
+ IRL E G+KPI+VFDGKPP K GEL KR + RE A+ KA+E+G L
Sbjct: 68 LLAKVIRLAEAGIKPIFVFDGKPPEDKQGELEKRRQAREAAELEQQKAEEEGNL 121
Score = 79.7 bits (195), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 39/92 (42%), Positives = 56/92 (60%)
Query: 232 FIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGWLYKEAREL 291
F+DLCIL GCDY +S+ GIGPK A +LI +HRSIE++L K W Y AREL
Sbjct: 222 FLDLCILCGCDYANSLEGIGPKTAYKLIVKHRSIEEVLAADQGKLAEKALNWPYVRAREL 281
Query: 292 FRHPEIADPETIELVADVAPSSIRESRKICID 323
F++P + DP+ I+ P + E+ + ++
Sbjct: 282 FKNPAVIDPKEIKKTLKWKPVNRGEAMQFLVE 313
>gi|254168936|ref|ZP_04875776.1| XPG I-region domain protein [Aciduliprofundum boonei T469]
gi|197622200|gb|EDY34775.1| XPG I-region domain protein [Aciduliprofundum boonei T469]
Length = 339
Score = 116 bits (291), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 59/152 (38%), Positives = 97/152 (63%), Gaps = 15/152 (9%)
Query: 60 KAPCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFH----- 114
+AP E EAQ A M K G YA+A++D D+L FG+ L+R++ + RKLP + +
Sbjct: 148 QAPSEGEAQAAYMAKKGDTYASASQDFDSLLFGAPNLVRNLAITGKRKLPRKNVYVDVKP 207
Query: 115 ----LEKVLEGMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENID 170
LE+ L+ + +S E+ +D+ IL+G DY + I+G+GPK A++LIK++ S+EKI++
Sbjct: 208 EIILLEENLKNLGISREQLVDIGILVGTDYNEGIKGVGPKTALKLIKKYGSLEKIIQE-- 265
Query: 171 TKKYTVPEGWLYKEARELFRHPEVADPETIEF 202
+ YT+P YKE +++F +P V D +E+
Sbjct: 266 -RGYTIPH---YKEIKDIFLNPPVTDSYKLEW 293
Score = 80.1 bits (196), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 40/91 (43%), Positives = 57/91 (62%), Gaps = 1/91 (1%)
Query: 320 ICIDASMSLYQFLIAVR-SEGNQLMSVDGEPTSHLMGTFYRTIRLVEHGLKPIYVFDGKP 378
I +DA +LYQFL +R +G L G TSHL G YRT + G+KP+YVFDG+P
Sbjct: 24 ISVDAYNALYQFLSIIRQPDGTPLRDHAGRVTSHLSGLLYRTANFLAEGIKPVYVFDGRP 83
Query: 379 PTLKSGELNKRMEKREDAQKALAKAQEQGKL 409
P LK + +R++ R +A++A KA ++G L
Sbjct: 84 PELKMRTIGERIKIRMEAKEAWEKALKEGNL 114
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/73 (39%), Positives = 50/73 (68%), Gaps = 6/73 (8%)
Query: 232 FIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGWLYKEAREL 291
+D+ IL+G DY + I+G+GPK A++LIK++ S+EKI++ + YT+P YKE +++
Sbjct: 226 LVDIGILVGTDYNEGIKGVGPKTALKLIKKYGSLEKIIQE---RGYTIPH---YKEIKDI 279
Query: 292 FRHPEIADPETIE 304
F +P + D +E
Sbjct: 280 FLNPPVTDSYKLE 292
Score = 38.5 bits (88), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 31/50 (62%)
Query: 408 KLKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSTTTQGRLDSFF 457
KL+W DE+ L+++LC + +F+ DR+ + +K+ + Q LDS+F
Sbjct: 290 KLEWRAFDEEKLIEFLCDEHDFSRDRVMSAIEKMRAFKKYREQRSLDSWF 339
>gi|238597041|ref|XP_002394219.1| hypothetical protein MPER_05929 [Moniliophthora perniciosa FA553]
gi|215462894|gb|EEB95149.1| hypothetical protein MPER_05929 [Moniliophthora perniciosa FA553]
Length = 156
Score = 116 bits (291), Expect = 2e-23, Method: Composition-based stats.
Identities = 56/97 (57%), Positives = 73/97 (75%), Gaps = 8/97 (8%)
Query: 305 LVADVAPSSIRE-------SRKICIDASMSLYQFLIAVRSEGNQLMSVD-GEPTSHLMGT 356
L+++ AP++I+E RK+ IDASMS+YQFLIAVR ++++ D GE TSHLMG
Sbjct: 9 LISEHAPNAIKEHEIKTLFGRKVAIDASMSIYQFLIAVRQRDGEMLTNDAGETTSHLMGF 68
Query: 357 FYRTIRLVEHGLKPIYVFDGKPPTLKSGELNKRMEKR 393
FYRTIR+VE+G+KP YVFDGKPP LK G L+KR +R
Sbjct: 69 FYRTIRIVENGIKPAYVFDGKPPELKKGVLSKRFARR 105
>gi|254166886|ref|ZP_04873740.1| XPG I-region domain protein [Aciduliprofundum boonei T469]
gi|289596167|ref|YP_003482863.1| flap structure-specific endonuclease [Aciduliprofundum boonei T469]
gi|197624496|gb|EDY37057.1| XPG I-region domain protein [Aciduliprofundum boonei T469]
gi|289533954|gb|ADD08301.1| flap structure-specific endonuclease [Aciduliprofundum boonei T469]
Length = 339
Score = 116 bits (291), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 59/152 (38%), Positives = 97/152 (63%), Gaps = 15/152 (9%)
Query: 60 KAPCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFH----- 114
+AP E EAQ A M K G YA+A++D D+L FG+ L+R++ + RKLP + +
Sbjct: 148 QAPSEGEAQAAYMAKKGDTYASASQDFDSLLFGAPNLVRNLAITGKRKLPRKNVYVDVKP 207
Query: 115 ----LEKVLEGMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENID 170
LE+ L+ + +S E+ +D+ IL+G DY + I+G+GPK A++LIK++ S+EKI++
Sbjct: 208 EIILLEENLKNLGISREQLVDIGILVGTDYNEGIKGVGPKTALKLIKKYGSLEKIIQE-- 265
Query: 171 TKKYTVPEGWLYKEARELFRHPEVADPETIEF 202
+ YT+P YKE +++F +P V D +E+
Sbjct: 266 -RGYTIPH---YKEIKDIFLNPPVTDSYKLEW 293
Score = 80.1 bits (196), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 40/91 (43%), Positives = 57/91 (62%), Gaps = 1/91 (1%)
Query: 320 ICIDASMSLYQFLIAVR-SEGNQLMSVDGEPTSHLMGTFYRTIRLVEHGLKPIYVFDGKP 378
I +DA +LYQFL +R +G L G TSHL G YRT + G+KP+YVFDG+P
Sbjct: 24 ISVDAYNALYQFLSIIRQPDGTPLRDHAGRVTSHLSGLLYRTANFLAEGIKPVYVFDGRP 83
Query: 379 PTLKSGELNKRMEKREDAQKALAKAQEQGKL 409
P LK + +R++ R +A++A KA ++G L
Sbjct: 84 PELKMRTIGERIKIRMEAKEAWEKALKEGNL 114
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/73 (39%), Positives = 50/73 (68%), Gaps = 6/73 (8%)
Query: 232 FIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGWLYKEAREL 291
+D+ IL+G DY + I+G+GPK A++LIK++ S+EKI++ + YT+P YKE +++
Sbjct: 226 LVDIGILVGTDYNEGIKGVGPKTALKLIKKYGSLEKIIQE---RGYTIPH---YKEIKDI 279
Query: 292 FRHPEIADPETIE 304
F +P + D +E
Sbjct: 280 FLNPPVTDSYKLE 292
>gi|156042752|ref|XP_001587933.1| hypothetical protein SS1G_11175 [Sclerotinia sclerotiorum 1980]
gi|154695560|gb|EDN95298.1| hypothetical protein SS1G_11175 [Sclerotinia sclerotiorum 1980
UF-70]
Length = 387
Score = 114 bits (286), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 66/147 (44%), Positives = 88/147 (59%), Gaps = 25/147 (17%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVLE 120
AP EAEAQCA + +AGK +L G E RK P+QE LEKVL
Sbjct: 167 APTEAEAQCAVLARAGK----------SLCGGD----------EQRKEPIQEVILEKVLA 206
Query: 121 GMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKK---YTVP 177
G+ + ++F+DLCILLGCDY D I +GP A++LI+EH +E ++ I K YT+P
Sbjct: 207 GLNMDRKQFVDLCILLGCDYLDPIPKVGPHTALKLIREHGDLETLVAWIKADKKERYTIP 266
Query: 178 EGWLYKEARELFRHPEV--ADPETIEF 202
E W Y++ARELF +P+V AD E +F
Sbjct: 267 EDWPYQDARELFFNPDVRPADHEDCDF 293
Score = 112 bits (279), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 55/124 (44%), Positives = 78/124 (62%), Gaps = 19/124 (15%)
Query: 303 IELVADVAPSSIRES-------------------RKICIDASMSLYQFLIAVRSEGNQLM 343
+ ++ D AP +++E +K+ SMS+Y FLIAVRS G L
Sbjct: 7 MAIIKDEAPDAVKEGEIKNQFGCVCTFDVDLYRFQKLIPTRSMSIYSFLIAVRSGGEMLT 66
Query: 344 SVDGEPTSHLMGTFYRTIRLVEHGLKPIYVFDGKPPTLKSGELNKRMEKREDAQKALAKA 403
+ +GE TSHLMG FYRT+R+V++G+KP+YVFDG PP LKSGEL KR +++ A + L +A
Sbjct: 67 NEEGETTSHLMGMFYRTLRIVDNGIKPVYVFDGAPPKLKSGELAKRFQRKATATEGLEEA 126
Query: 404 QEQG 407
+E G
Sbjct: 127 KETG 130
Score = 79.7 bits (195), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 35/69 (50%), Positives = 49/69 (71%), Gaps = 3/69 (4%)
Query: 232 FIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKK---YTVPEGWLYKEA 288
F+DLCILLGCDY D I +GP A++LI+EH +E ++ I K YT+PE W Y++A
Sbjct: 215 FVDLCILLGCDYLDPIPKVGPHTALKLIREHGDLETLVAWIKADKKERYTIPEDWPYQDA 274
Query: 289 RELFRHPEI 297
RELF +P++
Sbjct: 275 RELFFNPDV 283
Score = 58.5 bits (140), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 25/49 (51%), Positives = 34/49 (69%)
Query: 3 LKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSSTTQGRLDSFF 51
KW PD +GLVK+L +K F+EDR+R+ A+KL K S+ Q RL+ FF
Sbjct: 293 FKWEAPDIEGLVKFLVAEKGFSEDRVRSAAQKLTKNLKSSQQARLEGFF 341
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/49 (48%), Positives = 34/49 (69%)
Query: 409 LKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSTTTQGRLDSFF 457
KW PD +GLVK+L +K F+EDR+R+ A+KL K ++ Q RL+ FF
Sbjct: 293 FKWEAPDIEGLVKFLVAEKGFSEDRVRSAAQKLTKNLKSSQQARLEGFF 341
>gi|403222552|dbj|BAM40684.1| 5'-3' exonuclease [Theileria orientalis strain Shintoku]
Length = 824
Score = 114 bits (286), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 60/137 (43%), Positives = 88/137 (64%), Gaps = 8/137 (5%)
Query: 60 KAPCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVL 119
+AP EAEAQCA +V+ A+ED D L FG LLR++T S +K + + L+K L
Sbjct: 156 EAPEEAEAQCAYLVRNSLCRFVASEDTDTLAFGGGYLLRNVTASSNKK--IVKVDLQKAL 213
Query: 120 EGMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEG 179
+G++L+ E+F+D CIL GCDYCD++ G+GPK A L+K H S+E+I + TK +
Sbjct: 214 KGLDLTFEQFVDFCILCGCDYCDTLEGVGPKTAYTLVKRHASLEEI---VSTKGGNYDD- 269
Query: 180 WLYKEARELFRHPEVAD 196
++EA+E F P+V D
Sbjct: 270 --FREAKEYFMAPKVND 284
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 55/150 (36%), Positives = 81/150 (54%), Gaps = 17/150 (11%)
Query: 303 IELVADVAPSSIRE-------SRKICIDASMSLYQFLIAVRSEG--NQLMSVDGEPTSHL 353
I + + P S+ E I +DAS +LYQF IA+R + L++ GE TSHL
Sbjct: 7 IPFLNEKVPGSMTEMSLESLSGESIAVDASTALYQFTIAIRDSSYFSSLVNASGESTSHL 66
Query: 354 MGTFYRTIRLVEHGLKPIYVFDGKPPTLKSGELNKRMEKREDAQKALAKAQEQGKLKWSD 413
G R +L+E G+KP++VFD KPP LK L KR ++RE+A +L +A +G
Sbjct: 67 YGMMSRCSKLLECGIKPVFVFDSKPPELKLKTLEKRRQRREEASTSLKQAIAEG------ 120
Query: 414 PDEDGLVKYLCGDKNFAEDRIRNGAKKLLK 443
D++ +K L G + + AKKLL+
Sbjct: 121 -DKES-IKKLMGRTVKVTKEMNDSAKKLLR 148
Score = 65.1 bits (157), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 30/68 (44%), Positives = 44/68 (64%), Gaps = 6/68 (8%)
Query: 232 FIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGWLYKEAREL 291
F+D CIL GCDYCD++ G+GPK A L+K H S+E+I + TK + ++EA+E
Sbjct: 223 FVDFCILCGCDYCDTLEGVGPKTAYTLVKRHASLEEI---VSTKGGNYDD---FREAKEY 276
Query: 292 FRHPEIAD 299
F P++ D
Sbjct: 277 FMAPKVND 284
>gi|255634418|gb|ACU17574.1| unknown [Glycine max]
Length = 151
Score = 112 bits (281), Expect = 3e-22, Method: Composition-based stats.
Identities = 60/110 (54%), Positives = 78/110 (70%), Gaps = 8/110 (7%)
Query: 304 ELVADVAPSSIRES-------RKICIDASMSLYQFLIAVRSEGNQLMSVD-GEPTSHLMG 355
+L+AD AP S++E+ RKI IDASMS+YQFLI V G ++++ + GE TSHL G
Sbjct: 8 KLLADNAPKSMKENKFESYFGRKIAIDASMSIYQFLIVVGRSGTEMLTNEAGEVTSHLQG 67
Query: 356 TFYRTIRLVEHGLKPIYVFDGKPPTLKSGELNKRMEKREDAQKALAKAQE 405
F RTIRL+E G+KP+YVFDGKPP LK EL KR KR +A + L++A E
Sbjct: 68 MFSRTIRLLEAGIKPVYVFDGKPPDLKKQELAKRYSKRAEATEDLSEALE 117
>gi|146302997|ref|YP_001190313.1| flap endonuclease-1 [Metallosphaera sedula DSM 5348]
gi|145701247|gb|ABP94389.1| flap endonuclease 1 [Metallosphaera sedula DSM 5348]
Length = 300
Score = 112 bits (280), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 60/150 (40%), Positives = 94/150 (62%), Gaps = 14/150 (9%)
Query: 60 KAPCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLE--- 116
+AP E EA+ A + G YA+A++D D+L FG+ L+R++T S RKLP ++ ++E
Sbjct: 101 QAPSEGEAEAAYLNAKGITYASASQDYDSLLFGAEKLIRNLTISGKRKLPNKDVYVEVKP 160
Query: 117 ------KVLEGMELSHEEFIDLCILLGCDYC-DSIRGIGPKRAIELIKEHRSIEKILENI 169
+L+ +E++ E+ ID+ IL+G DY D +RGIGPK+A +LIK ++ I ENI
Sbjct: 161 ELIETASLLKKLEITREQLIDIAILVGTDYNPDGVRGIGPKKAYKLIKTYKKI----ENI 216
Query: 170 DTKKYTVPEGWLYKEARELFRHPEVADPET 199
D ++ P + Y++ RELF P+V P T
Sbjct: 217 DKRELPEPIYFDYEKIRELFLKPQVTLPST 246
Score = 66.2 bits (160), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 29/47 (61%), Positives = 35/47 (74%)
Query: 343 MSVDGEPTSHLMGTFYRTIRLVEHGLKPIYVFDGKPPTLKSGELNKR 389
M+ G+ TSHL G FYRT+ L+E G+ PIYVFDGKPP LK+ EL R
Sbjct: 1 MNRQGKVTSHLNGVFYRTVNLLEEGIIPIYVFDGKPPELKAQELENR 47
Score = 65.9 bits (159), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 36/84 (42%), Positives = 52/84 (61%), Gaps = 5/84 (5%)
Query: 232 FIDLCILLGCDYC-DSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGWLYKEARE 290
ID+ IL+G DY D +RGIGPK+A +LIK ++ I ENID ++ P + Y++ RE
Sbjct: 179 LIDIAILVGTDYNPDGVRGIGPKKAYKLIKTYKKI----ENIDKRELPEPIYFDYEKIRE 234
Query: 291 LFRHPEIADPETIELVADVAPSSI 314
LF P++ P T ++D PS I
Sbjct: 235 LFLKPQVTLPSTPLELSDPDPSKI 258
>gi|294871168|ref|XP_002765850.1| flap endonuclease-1, putative [Perkinsus marinus ATCC 50983]
gi|239866179|gb|EEQ98567.1| flap endonuclease-1, putative [Perkinsus marinus ATCC 50983]
Length = 297
Score = 112 bits (280), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 64/155 (41%), Positives = 91/155 (58%), Gaps = 9/155 (5%)
Query: 50 FFTIRREEKRKAPCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMT----FSEA 105
T R AP +AEA C + K GK A +TED+DA+ FG+ I+L++++ S +
Sbjct: 97 LLTHRASTLIAAP-QAEATCVRLCKEGKADAVSTEDIDAVVFGAPIVLKNLSNTLHHSRS 155
Query: 106 RKLP---VQEFHLEKVLEGMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSI 162
++P V+E + VL+ + L+ E +L IL GCDYC SI IGP RA L+ +H SI
Sbjct: 156 MEVPNNYVREISRDVVLDSLSLTAEGLAELAILCGCDYCPSIPKIGPTRAYGLLLKHGSI 215
Query: 163 EKILENID-TKKYTVPEGWLYKEARELFRHPEVAD 196
I+ I+ +K Y P GW Y+EARELF +P D
Sbjct: 216 TSIITAIEGSKTYKAPSGWAYREARELFLNPLTTD 250
Score = 72.4 bits (176), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 35/69 (50%), Positives = 43/69 (62%), Gaps = 1/69 (1%)
Query: 232 FIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENID-TKKYTVPEGWLYKEARE 290
+L IL GCDYC SI IGP RA L+ +H SI I+ I+ +K Y P GW Y+EARE
Sbjct: 182 LAELAILCGCDYCPSIPKIGPTRAYGLLLKHGSITSIITAIEGSKTYKAPSGWAYREARE 241
Query: 291 LFRHPEIAD 299
LF +P D
Sbjct: 242 LFLNPLTTD 250
Score = 47.0 bits (110), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 19/42 (45%), Positives = 30/42 (71%)
Query: 341 QLMSVDGEPTSHLMGTFYRTIRLVEHGLKPIYVFDGKPPTLK 382
L + +G TS + G +RTI+++E G++PI+VFDG PP +K
Sbjct: 1 MLTNSEGVCTSGVHGFLHRTIKMLELGIRPIFVFDGHPPAMK 42
>gi|294932999|ref|XP_002780547.1| flap endonuclease 1, putative [Perkinsus marinus ATCC 50983]
gi|239890481|gb|EER12342.1| flap endonuclease 1, putative [Perkinsus marinus ATCC 50983]
Length = 427
Score = 110 bits (274), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 60/154 (38%), Positives = 90/154 (58%), Gaps = 18/154 (11%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMT--------------FSEAR 106
A +AEA C + K GK A +TED+DA+ FG+ I+L++++ +S ++
Sbjct: 158 AAPQAEATCVRLCKEGKADAVSTEDIDAVVFGAPIVLKNLSNTLHRLEQNSSSRPYSRSK 217
Query: 107 KLP---VQEFHLEKVLEGMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIE 163
++P V+E + VL+ + L+ E +L IL GCDYC SI IGP RA L+ +H SI
Sbjct: 218 EVPNNYVREISRDVVLDSLSLTAEGLAELAILCGCDYCPSIPKIGPTRAYGLLLKHGSIT 277
Query: 164 KILENID-TKKYTVPEGWLYKEARELFRHPEVAD 196
I+ I+ +K Y P GW Y+EA+ELF +P D
Sbjct: 278 SIITAIEGSKTYKAPSGWAYREAKELFLNPLTTD 311
Score = 70.9 bits (172), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 34/69 (49%), Positives = 43/69 (62%), Gaps = 1/69 (1%)
Query: 232 FIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENID-TKKYTVPEGWLYKEARE 290
+L IL GCDYC SI IGP RA L+ +H SI I+ I+ +K Y P GW Y+EA+E
Sbjct: 243 LAELAILCGCDYCPSIPKIGPTRAYGLLLKHGSITSIITAIEGSKTYKAPSGWAYREAKE 302
Query: 291 LFRHPEIAD 299
LF +P D
Sbjct: 303 LFLNPLTTD 311
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 35/80 (43%), Positives = 52/80 (65%), Gaps = 7/80 (8%)
Query: 310 APSSIRESR-------KICIDASMSLYQFLIAVRSEGNQLMSVDGEPTSHLMGTFYRTIR 362
APS+IRE R ++ IDAS+ +YQF +R E L + +G TS + G +RTI+
Sbjct: 14 APSAIRECRPEEFAGKRLAIDASIWMYQFKTKIRYEDKMLTNSEGVCTSGVHGFLHRTIK 73
Query: 363 LVEHGLKPIYVFDGKPPTLK 382
++E G++PI+VFDG PP +K
Sbjct: 74 MLELGIRPIFVFDGHPPAMK 93
>gi|330835718|ref|YP_004410446.1| flap endonuclease-1 [Metallosphaera cuprina Ar-4]
gi|329567857|gb|AEB95962.1| flap endonuclease-1 [Metallosphaera cuprina Ar-4]
Length = 301
Score = 108 bits (270), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 64/167 (38%), Positives = 101/167 (60%), Gaps = 16/167 (9%)
Query: 60 KAPCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEK-- 117
+AP E EA+ A M G VYA A++D D+L FG+ L+R++T S RKLP ++ ++E
Sbjct: 101 QAPSEGEAEAAYMNSQGLVYAAASQDYDSLLFGATRLIRNLTISGKRKLPNKDAYVEVKP 160
Query: 118 -------VLEGMELSHEEFIDLCILLGCDYC-DSIRGIGPKRAIELIKEHRSIEKILENI 169
+L+ + ++ +E ID+ IL+G DY D I+GIGPKRA +LIK ++ I E+I
Sbjct: 161 EVIEADLLLKKLGITRDELIDIAILIGTDYNPDGIKGIGPKRAYKLIKTYKRI----EDI 216
Query: 170 DTKKYTVPE-GWLYKEARELFRHPEVADP-ETIEFIDLCILLGCDYC 214
D K++ + + YK+ RE+F PEV P E ++ D+ + D+
Sbjct: 217 DKKEFDLELIDFDYKKIREMFLRPEVVLPKEPLDLGDVNVQGVVDFL 263
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 36/67 (53%), Positives = 51/67 (76%)
Query: 343 MSVDGEPTSHLMGTFYRTIRLVEHGLKPIYVFDGKPPTLKSGELNKRMEKREDAQKALAK 402
M+ +G+ TSHL G FYRT+ L+E G+ PIYVFDGKPP +K+ EL R + +E+A K L +
Sbjct: 1 MNREGKITSHLNGLFYRTVNLLEQGVIPIYVFDGKPPEIKAQELENRRKLKEEAMKKLER 60
Query: 403 AQEQGKL 409
A+E+GK+
Sbjct: 61 AKEEGKI 67
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 34/80 (42%), Positives = 50/80 (62%), Gaps = 6/80 (7%)
Query: 232 FIDLCILLGCDYC-DSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPE-GWLYKEAR 289
ID+ IL+G DY D I+GIGPKRA +LIK ++ I E+ID K++ + + YK+ R
Sbjct: 179 LIDIAILIGTDYNPDGIKGIGPKRAYKLIKTYKRI----EDIDKKEFDLELIDFDYKKIR 234
Query: 290 ELFRHPEIADPETIELVADV 309
E+F PE+ P+ + DV
Sbjct: 235 EMFLRPEVVLPKEPLDLGDV 254
>gi|72160212|gb|AAZ66769.1| flap endonuclease FEN-1a [Zea mays]
Length = 90
Score = 108 bits (269), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 49/90 (54%), Positives = 70/90 (77%)
Query: 87 DALTFGSNILLRHMTFSEARKLPVQEFHLEKVLEGMELSHEEFIDLCILLGCDYCDSIRG 146
D+LTFG+ LRH+ ++K+PV EF + KVLE +EL+ ++FIDLCIL GCDYCDSI+G
Sbjct: 1 DSLTFGAPRFLRHLMDPSSKKIPVMEFDVAKVLEELELTMDQFIDLCILCGCDYCDSIKG 60
Query: 147 IGPKRAIELIKEHRSIEKILENIDTKKYTV 176
IG + A++LI++H SIE ILEN++ +Y +
Sbjct: 61 IGGQTALKLIRQHGSIESILENLNKDRYRI 90
Score = 68.9 bits (167), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 30/48 (62%), Positives = 40/48 (83%)
Query: 232 FIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTV 279
FIDLCIL GCDYCDSI+GIG + A++LI++H SIE ILEN++ +Y +
Sbjct: 43 FIDLCILCGCDYCDSIKGIGGQTALKLIRQHGSIESILENLNKDRYRI 90
>gi|399218750|emb|CCF75637.1| unnamed protein product [Babesia microti strain RI]
Length = 452
Score = 107 bits (268), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 60/156 (38%), Positives = 94/156 (60%), Gaps = 17/156 (10%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTF-------------SEARK 107
A EAEAQCA MVK G +TED D LTFG+ +L+R+++ S++ K
Sbjct: 157 ASQEAEAQCAYMVKWGIADVASTEDTDCLTFGTPVLIRNLSNALAISSNKNSKFNSKSPK 216
Query: 108 LPVQEFHLEKVLEGMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILE 167
+ L K L G +L+ +F+DLCIL GCDYC ++G+GPK A+ L++++++IE+I+
Sbjct: 217 SHLLRIDLNKTLNGFKLNINQFVDLCILCGCDYCGKLKGVGPKTALSLLQKYKTIEEIIA 276
Query: 168 NIDTKKYT-VPEGWLYKEARELFRHPEVADPETIEF 202
+ K+ T + E + YK AR+ F P++ E I+
Sbjct: 277 H---KEITCIDENFDYKMARDAFLSPKIVPKEEIKL 309
Score = 100 bits (249), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 50/93 (53%), Positives = 66/93 (70%), Gaps = 4/93 (4%)
Query: 320 ICIDASMSLYQFLIAVRSEGN---QLMSVDGEPTSHLMGTFYRTIRLVEHGLKPIYVFDG 376
I IDASM+LYQF+IA+R +GN L++ +GEPTSH+ G R L+E G++PIYVFDG
Sbjct: 31 IAIDASMTLYQFMIAIR-QGNFATSLVNANGEPTSHIAGLMLRVAALLELGIRPIYVFDG 89
Query: 377 KPPTLKSGELNKRMEKREDAQKALAKAQEQGKL 409
+PP KS L KR E++E+A K L +A E G L
Sbjct: 90 EPPQAKSDTLLKRKERKEEALKLLEQAMETGDL 122
Score = 68.6 bits (166), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 33/75 (44%), Positives = 53/75 (70%), Gaps = 4/75 (5%)
Query: 232 FIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYT-VPEGWLYKEARE 290
F+DLCIL GCDYC ++G+GPK A+ L++++++IE+I+ + K+ T + E + YK AR+
Sbjct: 238 FVDLCILCGCDYCGKLKGVGPKTALSLLQKYKTIEEIIAH---KEITCIDENFDYKMARD 294
Query: 291 LFRHPEIADPETIEL 305
F P+I E I+L
Sbjct: 295 AFLSPKIVPKEEIKL 309
Score = 42.0 bits (97), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 30/54 (55%)
Query: 404 QEQGKLKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSTTTQGRLDSFF 457
+E+ KL+W +P+ L+ +L NF +DR+ KL+ R Q ++ SFF
Sbjct: 304 KEEIKLEWREPNIPELIDFLVVKNNFNQDRVNKFINKLINIRKVKPQQQISSFF 357
>gi|84994172|ref|XP_951808.1| 5'-3' exonuclease [Theileria annulata strain Ankara]
gi|74952859|sp|Q4UFP0.1|FEN1_THEAN RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|65301969|emb|CAI74076.1| 5'-3' exonuclease, putative [Theileria annulata]
Length = 506
Score = 107 bits (267), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 54/131 (41%), Positives = 86/131 (65%), Gaps = 8/131 (6%)
Query: 64 EAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVLEGME 123
EAEAQCA +V + A+ED D L FG LLR++T S +K + + L+KVL+G+E
Sbjct: 160 EAEAQCAYLVTKNLCHFVASEDTDTLVFGGWFLLRNVTSSANKK--IVKVDLQKVLDGLE 217
Query: 124 LSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGWLYK 183
+ ++F+D CIL GCDYCD++ G+GPK A L+K+++S+E+I+ ++ + +K
Sbjct: 218 FNFDQFVDFCILCGCDYCDTLEGVGPKTAYSLVKKYQSLEEIV------RFKGGDYDEFK 271
Query: 184 EARELFRHPEV 194
EA++ F P+V
Sbjct: 272 EAKDYFLSPKV 282
Score = 94.0 bits (232), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 57/150 (38%), Positives = 83/150 (55%), Gaps = 17/150 (11%)
Query: 303 IELVADVAPSSIRE-------SRKICIDASMSLYQFLIAVRSEG--NQLMSVDGEPTSHL 353
I +++ PSSI E + IDAS +LYQF IA+R + L++ GE TSH+
Sbjct: 7 IPFLSEKVPSSISELSLECLSGESLAIDASAALYQFTIAIRDSSYFSSLVNSKGESTSHI 66
Query: 354 MGTFYRTIRLVEHGLKPIYVFDGKPPTLKSGELNKRMEKREDAQKALAKAQEQGKLKWSD 413
G R +L+E+G+KP++VFD KPP LKS L+KR +KRE+A+ KA +G + +
Sbjct: 67 YGLMNRCSKLLEYGIKPVFVFDSKPPELKSKTLDKRRQKREEAKTDFKKAISEGDKESA- 125
Query: 414 PDEDGLVKYLCGDKNFAEDRIRNGAKKLLK 443
K L G + + AKKLL+
Sbjct: 126 -------KKLVGRTVKVTKDMNDSAKKLLR 148
Score = 60.8 bits (146), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 45/66 (68%), Gaps = 6/66 (9%)
Query: 232 FIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGWLYKEAREL 291
F+D CIL GCDYCD++ G+GPK A L+K+++S+E+I+ ++ + +KEA++
Sbjct: 223 FVDFCILCGCDYCDTLEGVGPKTAYSLVKKYQSLEEIV------RFKGGDYDEFKEAKDY 276
Query: 292 FRHPEI 297
F P++
Sbjct: 277 FLSPKV 282
Score = 48.1 bits (113), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 21/46 (45%), Positives = 29/46 (63%), Gaps = 3/46 (6%)
Query: 201 EFIDLCILLGCDYCDSIRGIGPKRAIELL---YSFIDLCILLGCDY 243
+F+D CIL GCDYCD++ G+GPK A L+ S ++ G DY
Sbjct: 222 QFVDFCILCGCDYCDTLEGVGPKTAYSLVKKYQSLEEIVRFKGGDY 267
>gi|428672546|gb|EKX73459.1| flap endonuclease-1, putative [Babesia equi]
Length = 746
Score = 107 bits (266), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 64/139 (46%), Positives = 87/139 (62%), Gaps = 14/139 (10%)
Query: 64 EAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVLEGME 123
EAEAQCA +V+ G A A+ED D+L FG ILLR+++ + V EKVL +
Sbjct: 160 EAEAQCAQLVQEGIATAVASEDSDSLVFGCRILLRNLSGKK-----VLRIDQEKVLSLLG 214
Query: 124 LSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGWLYK 183
+ +F D CIL GCDYC +I+GIGPK A LIK+++SIE+IL+ K T+P ++
Sbjct: 215 FTRAQFTDFCILCGCDYCGTIKGIGPKNAYSLIKKYKSIEEILK---FKGETLPG---FE 268
Query: 184 EARELFRHPEV---ADPET 199
EAR F P+V A+PET
Sbjct: 269 EARRYFLAPQVFEGANPET 287
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 59/150 (39%), Positives = 84/150 (56%), Gaps = 17/150 (11%)
Query: 303 IELVADVAPSSIRE-------SRKICIDASMSLYQFLIAVRSEG--NQLMSVDGEPTSHL 353
I +++ APSSI+E I IDAS +LYQF IA+R + L++ GE TSH+
Sbjct: 7 IGFLSETAPSSIKEVPLESLSGETIAIDASAALYQFAIAIRDTSYLSTLVNSKGESTSHI 66
Query: 354 MGTFYRTIRLVEHGLKPIYVFDGKPPTLKSGELNKRMEKREDAQKALAKAQEQGKLKWSD 413
G R +R++E G+KPI+VFD PP LK L+KR E+RE+A+ +L A+E G
Sbjct: 67 SGLMNRCVRILEAGIKPIFVFDSTPPDLKLDTLSKRKERREEAEASLEAAKEAG------ 120
Query: 414 PDEDGLVKYLCGDKNFAEDRIRNGAKKLLK 443
+ +K L G N AK+LL+
Sbjct: 121 --DSETIKKLVGRTVKVSKEQNNSAKQLLR 148
Score = 67.4 bits (163), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 37/74 (50%), Positives = 50/74 (67%), Gaps = 9/74 (12%)
Query: 232 FIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGWLYKEAREL 291
F D CIL GCDYC +I+GIGPK A LIK+++SIE+IL+ K T+P ++EAR
Sbjct: 220 FTDFCILCGCDYCGTIKGIGPKNAYSLIKKYKSIEEILK---FKGETLPG---FEEARRY 273
Query: 292 FRHPEI---ADPET 302
F P++ A+PET
Sbjct: 274 FLAPQVFEGANPET 287
>gi|71031676|ref|XP_765480.1| flap endonuclease 1 [Theileria parva strain Muguga]
gi|122052062|sp|Q4N3S6.1|FEN1_THEPA RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|68352436|gb|EAN33197.1| flap endonuclease 1, putative [Theileria parva]
Length = 494
Score = 107 bits (266), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 56/133 (42%), Positives = 85/133 (63%), Gaps = 8/133 (6%)
Query: 64 EAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVLEGME 123
EAEAQCA +V A+ED D L FG LLR++ S ++K + + L+KVL+G+E
Sbjct: 160 EAEAQCAYLVTKNLCRFVASEDTDTLVFGGAFLLRNVASSSSKK--ILKVDLQKVLDGLE 217
Query: 124 LSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGWLYK 183
+ ++FID CIL GCDYCD++ G+GPK A L+K+++++E+I+ N Y +K
Sbjct: 218 FNFDQFIDFCILCGCDYCDTLEGVGPKTAYSLVKKYQNLEEIV-NFKGGDYDD-----FK 271
Query: 184 EARELFRHPEVAD 196
EA+E F P+V +
Sbjct: 272 EAKEYFLSPKVNE 284
Score = 88.6 bits (218), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 51/125 (40%), Positives = 73/125 (58%), Gaps = 10/125 (8%)
Query: 321 CIDASMSLYQFLIAVRSEG--NQLMSVDGEPTSHLMGTFYRTIRLVEHGLKPIYVFDGKP 378
IDAS +LYQF IA+R + L++ GE TSH+ G R + +E+G+KP++VFD KP
Sbjct: 32 AIDASAALYQFTIAIRDSSYFSSLVNSKGESTSHIYGLMNRCSKFLEYGIKPVFVFDSKP 91
Query: 379 PTLKSGELNKRMEKREDAQKALAKAQEQGKLKWSDPDEDGLVKYLCGDKNFAEDRIRNGA 438
P LK+ L KR ++RE+A +L KA +G D++ VK L G + A
Sbjct: 92 PELKTKTLEKRRQQREEANASLKKAISEG-------DKES-VKKLVGRTVKVSKEMNESA 143
Query: 439 KKLLK 443
KKLL+
Sbjct: 144 KKLLR 148
Score = 62.0 bits (149), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 33/87 (37%), Positives = 53/87 (60%), Gaps = 9/87 (10%)
Query: 232 FIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGWLYKEAREL 291
FID CIL GCDYCD++ G+GPK A L+K+++++E+I+ N Y +KEA+E
Sbjct: 223 FIDFCILCGCDYCDTLEGVGPKTAYSLVKKYQNLEEIV-NFKGGDYDD-----FKEAKEY 276
Query: 292 FRHPEIA--DPETIELVADVAPSSIRE 316
F P++ D +++L + P + E
Sbjct: 277 FLSPKVNEYDENSVKL-GTIDPEGLTE 302
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/48 (47%), Positives = 32/48 (66%), Gaps = 3/48 (6%)
Query: 201 EFIDLCILLGCDYCDSIRGIGPKRAIELLYSFIDLCILL---GCDYCD 245
+FID CIL GCDYCD++ G+GPK A L+ + +L ++ G DY D
Sbjct: 222 QFIDFCILCGCDYCDTLEGVGPKTAYSLVKKYQNLEEIVNFKGGDYDD 269
>gi|440491836|gb|ELQ74443.1| 5'-3' exonuclease [Trachipleistophora hominis]
Length = 335
Score = 106 bits (265), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 58/126 (46%), Positives = 81/126 (64%), Gaps = 11/126 (8%)
Query: 64 EAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVLEGME 123
EAEA CAA+ + G V TEDMDAL F + +LL++ K V E+ L+++L M+
Sbjct: 155 EAEAFCAALCRKGIVDYVCTEDMDALCFRAPVLLKNFV-----KDSVAEYRLDEILRDMK 209
Query: 124 LSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGWLYK 183
L +EF+DLCILLGCDY +I+GIGP +A LI++HRSIE I++ + Y Y+
Sbjct: 210 LEFDEFVDLCILLGCDYAGTIKGIGPMKAETLIRKHRSIENIVKELQVTDYE------YE 263
Query: 184 EARELF 189
+ARE F
Sbjct: 264 KARETF 269
Score = 99.0 bits (245), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 45/96 (46%), Positives = 68/96 (70%), Gaps = 1/96 (1%)
Query: 311 PSSIRESRKICIDASMSLYQFLIAVRSEGNQLMSVDGEPTSHLMGTFYRTIRLVEHGLKP 370
P S ++K+ DAS+ YQ+L+A+RS+G QL + TSH+ G FY+ I L E G+KP
Sbjct: 20 PLSFYRTKKMAFDASLLTYQYLVAIRSDGAQLAH-NSSSTSHISGFFYKIINLAEIGIKP 78
Query: 371 IYVFDGKPPTLKSGELNKRMEKREDAQKALAKAQEQ 406
++VFDGKPP +KS E+ +R E+R+DA + ++A+EQ
Sbjct: 79 LFVFDGKPPQVKSEEIARRNERRKDAAEKYSEAEEQ 114
Score = 65.9 bits (159), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 31/61 (50%), Positives = 42/61 (68%), Gaps = 6/61 (9%)
Query: 232 FIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGWLYKEAREL 291
F+DLCILLGCDY +I+GIGP +A LI++HRSIE I++ + Y Y++ARE
Sbjct: 215 FVDLCILLGCDYAGTIKGIGPMKAETLIRKHRSIENIVKELQVTDYE------YEKARET 268
Query: 292 F 292
F
Sbjct: 269 F 269
>gi|315426143|dbj|BAJ47788.1| flap endonuclease 1 [Candidatus Caldiarchaeum subterraneum]
gi|343485003|dbj|BAJ50657.1| flap endonuclease 1 [Candidatus Caldiarchaeum subterraneum]
Length = 344
Score = 105 bits (262), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 56/151 (37%), Positives = 88/151 (58%), Gaps = 14/151 (9%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQE-------- 112
AP E EAQ A M G VYA ++DMD+L FGS L+R+++ RKLP ++
Sbjct: 152 APSEGEAQAAYMAAKGSVYAAGSQDMDSLLFGSPRLVRNLSIVGRRKLPGRKEYVEVVPE 211
Query: 113 -FHLEKVLEGMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDT 171
+L+K+L + L+ E+ ID+ +L+G DY +RG+GPK A++++KE+ S+EK +E
Sbjct: 212 IIYLDKLLASLGLTREQLIDIGLLVGTDYSPQVRGVGPKTALKIVKEYGSLEKAVET--- 268
Query: 172 KKYTVPEGWLYKEARELFRHPEVADPETIEF 202
V + + R+LF P V D T+ +
Sbjct: 269 --GAVEVEFDVQTVRQLFLKPRVTDDYTLNW 297
Score = 79.0 bits (193), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 45/114 (39%), Positives = 59/114 (51%), Gaps = 9/114 (7%)
Query: 306 VADVAPSSIRE--------SRKICIDASMSLYQFLIAVRS-EGNQLMSVDGEPTSHLMGT 356
+ D+ P E + I DA LYQFL +R +G LM G TSHL G
Sbjct: 5 IGDIIPGEAVEQTSLKRLSGKAIAFDAYNILYQFLATIRGPDGRPLMDRRGRVTSHLSGL 64
Query: 357 FYRTIRLVEHGLKPIYVFDGKPPTLKSGELNKRMEKREDAQKALAKAQEQGKLK 410
F+RTI ++ GL P+YVFDG+PP K + KR RE+A K A +G L+
Sbjct: 65 FFRTINFLQEGLLPVYVFDGRPPEEKYRTIEKRAVAREEAGKLYEAALAEGDLE 118
Score = 52.0 bits (123), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 42/72 (58%), Gaps = 5/72 (6%)
Query: 232 FIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGWLYKEAREL 291
ID+ +L+G DY +RG+GPK A++++KE+ S+EK +E V + + R+L
Sbjct: 229 LIDIGLLVGTDYSPQVRGVGPKTALKIVKEYGSLEKAVET-----GAVEVEFDVQTVRQL 283
Query: 292 FRHPEIADPETI 303
F P + D T+
Sbjct: 284 FLKPRVTDDYTL 295
>gi|432328461|ref|YP_007246605.1| flap structure-specific endonuclease [Aciduliprofundum sp.
MAR08-339]
gi|432135170|gb|AGB04439.1| flap structure-specific endonuclease [Aciduliprofundum sp.
MAR08-339]
Length = 339
Score = 104 bits (260), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 55/155 (35%), Positives = 96/155 (61%), Gaps = 15/155 (9%)
Query: 60 KAPCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLE--- 116
+AP E EAQ A M + G YA+A++D D+L FG+ L+R+M + RKLP + ++E
Sbjct: 148 QAPSEGEAQAAFMAQRGDAYASASQDFDSLLFGTPRLVRNMAITGKRKLPRKRVYVEVKP 207
Query: 117 ------KVLEGMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENID 170
+ L+ +E++ E+ +D+ IL+G D+ I+GIGPK A++LIK+ S+E++++
Sbjct: 208 EMLVLNETLKNLEITREQLVDIGILVGTDFNPGIKGIGPKTALKLIKKFGSLERVMD--- 264
Query: 171 TKKYTVPEGWLYKEARELFRHPEVADPETIEFIDL 205
+K V E Y+E R +F +P V + ++++ L
Sbjct: 265 -EKGIVIEN--YEEIRNIFLNPPVTNEYKLQWMWL 296
Score = 74.7 bits (182), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 38/79 (48%), Positives = 47/79 (59%), Gaps = 1/79 (1%)
Query: 316 ESRKICIDASMSLYQFLIAVR-SEGNQLMSVDGEPTSHLMGTFYRTIRLVEHGLKPIYVF 374
+ R I IDA SLYQFL +R +G L G TSHL G YRT + G+KP+YVF
Sbjct: 20 KGRVIAIDAYNSLYQFLSIIRQPDGTPLRDSRGRVTSHLSGLLYRTANYMAEGIKPVYVF 79
Query: 375 DGKPPTLKSGELNKRMEKR 393
DG+PP LK + +RM R
Sbjct: 80 DGRPPELKMRTIQERMHVR 98
Score = 51.6 bits (122), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 44/68 (64%), Gaps = 6/68 (8%)
Query: 232 FIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGWLYKEAREL 291
+D+ IL+G D+ I+GIGPK A++LIK+ S+E++++ +K V E Y+E R +
Sbjct: 226 LVDIGILVGTDFNPGIKGIGPKTALKLIKKFGSLERVMD----EKGIVIEN--YEEIRNI 279
Query: 292 FRHPEIAD 299
F +P + +
Sbjct: 280 FLNPPVTN 287
>gi|300707184|ref|XP_002995811.1| hypothetical protein NCER_101198 [Nosema ceranae BRL01]
gi|239605030|gb|EEQ82140.1| hypothetical protein NCER_101198 [Nosema ceranae BRL01]
Length = 265
Score = 104 bits (259), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 52/107 (48%), Positives = 72/107 (67%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVLE 120
AP EAEA CA + K V A ATEDMDAL FG+ +LLR + + +K V E++L+ L
Sbjct: 154 APSEAEAFCAYLCKVKCVDAVATEDMDALPFGAPVLLRGFSSAAVKKTHVTEYNLQTCLG 213
Query: 121 GMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILE 167
++++ EFIDLCILLGCDY +S +GIGPK+ + LIK +++ L
Sbjct: 214 ELDMNLPEFIDLCILLGCDYTESGKGIGPKKGVSLIKNTNVLKRYLN 260
Score = 100 bits (248), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 67/160 (41%), Positives = 89/160 (55%), Gaps = 18/160 (11%)
Query: 318 RKICIDASMSLYQFLIAVRSEGNQLMSVDGEPTSHLMGTFYRTIRLVEHGLKPIYVFDGK 377
+K+ ID S +YQFLIAVRS GN L D TSHL+G FYRTIR+VE G+ PI+VFDGK
Sbjct: 29 KKVAIDISNFIYQFLIAVRSGGNALGYGD-TTTSHLVGMFYRTIRIVESGVTPIFVFDGK 87
Query: 378 PPTLKSGELNKRMEKREDAQKALAKAQEQGKLKWSDPDEDGLVKYLCGDKNFAEDRIRNG 437
PP LK EL KR ++R+ KA+EQ KL D+ + K +E+ + N
Sbjct: 88 PPELKLYELKKRSDRRD-------KAEEQLKLAMEAEDKAEIEKQTKRKIKVSEEHV-ND 139
Query: 438 AKKLLKARSTTTQGRLDSFFTIRREEKRKSRCQYQCQYQC 477
K+LLK + T E ++ C Y C+ +C
Sbjct: 140 CKRLLKLMGI-------PYLTAPSEA--EAFCAYLCKVKC 170
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 23/42 (54%), Positives = 30/42 (71%)
Query: 229 LYSFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILE 270
L FIDLCILLGCDY +S +GIGPK+ + LIK +++ L
Sbjct: 219 LPEFIDLCILLGCDYTESGKGIGPKKGVSLIKNTNVLKRYLN 260
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/34 (61%), Positives = 26/34 (76%)
Query: 196 DPETIEFIDLCILLGCDYCDSIRGIGPKRAIELL 229
D EFIDLCILLGCDY +S +GIGPK+ + L+
Sbjct: 216 DMNLPEFIDLCILLGCDYTESGKGIGPKKGVSLI 249
>gi|116668192|pdb|2IZO|A Chain A, Structure Of An Archaeal Pcna1-Pcna2-Fen1 Complex
Length = 346
Score = 102 bits (255), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 61/166 (36%), Positives = 99/166 (59%), Gaps = 14/166 (8%)
Query: 60 KAPCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHL---- 115
+AP E EA+ A + K G +A A++D DA+ FG+ L+R++T + RKLP ++ ++
Sbjct: 145 QAPSEGEAEAAYLNKLGLSWAAASQDYDAILFGAKRLVRNLTITGKRKLPNKDVYVEIKP 204
Query: 116 -----EKVLEGMELSHEEFIDLCILLGCDYC-DSIRGIGPKRAIELIKEHRSIEKILENI 169
E +L+ + ++ E+ ID+ IL+G DY D IRGIGP+RA+++IK++ IEK +E
Sbjct: 205 ELIETEILLKKLGITREQLIDIGILIGTDYNPDGIRGIGPERALKIIKKYGKIEKAMEYG 264
Query: 170 DTKKYTVPEGWLYKEARELFRHPEVADPETIEFIDLCILLGCDYCD 215
+ K + + E R LF +P+V PE E +DL G D +
Sbjct: 265 EISKKDI--NFNIDEIRGLFLNPQVVKPE--EALDLNEPNGEDIIN 306
Score = 97.8 bits (242), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 46/94 (48%), Positives = 65/94 (69%), Gaps = 1/94 (1%)
Query: 317 SRKICIDASMSLYQFLIAVR-SEGNQLMSVDGEPTSHLMGTFYRTIRLVEHGLKPIYVFD 375
+++ ID +LYQFL A+R +G LM G TSHL G FYRTI ++E G+ PIYVFD
Sbjct: 18 GKRVSIDGYNALYQFLAAIRQPDGTPLMDSQGRVTSHLSGLFYRTINILEEGVIPIYVFD 77
Query: 376 GKPPTLKSGELNKRMEKREDAQKALAKAQEQGKL 409
GKPP KS EL +R + +E+A++ L +A+ +GK+
Sbjct: 78 GKPPEQKSEELERRRKAKEEAERKLERAKSEGKI 111
Score = 56.2 bits (134), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 30/71 (42%), Positives = 45/71 (63%), Gaps = 3/71 (4%)
Query: 232 FIDLCILLGCDYC-DSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGWLYKEARE 290
ID+ IL+G DY D IRGIGP+RA+++IK++ IEK +E + K + + E R
Sbjct: 223 LIDIGILIGTDYNPDGIRGIGPERALKIIKKYGKIEKAMEYGEISKKDI--NFNIDEIRG 280
Query: 291 LFRHPEIADPE 301
LF +P++ PE
Sbjct: 281 LFLNPQVVKPE 291
>gi|346430351|emb|CCC55608.1| flap endonuclease-1 [uncultured archaeon]
Length = 343
Score = 102 bits (255), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 55/152 (36%), Positives = 92/152 (60%), Gaps = 11/152 (7%)
Query: 60 KAPCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLE--- 116
+AP E EAQ A M G + + ++D D+L FGS L+R++T S RKLP ++ ++E
Sbjct: 151 EAPSEGEAQAAYMAARGVTWGSVSQDYDSLLFGSPRLVRNLTVSGRRKLPNKDVYVEISP 210
Query: 117 ------KVLEGMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENID 170
K+L+ E++ E+ +D+ IL+G D+ I+GIGPK A++LIK++ IE I E +
Sbjct: 211 EMIETEKLLKFYEITREQLVDIGILVGTDFNIGIKGIGPKTALKLIKKYGKIENIKEVPN 270
Query: 171 TKKYTVPEGWLYKEARELFRHPEVADPETIEF 202
++ E + E R++F P+V D + +E+
Sbjct: 271 LSEFLPQE--VLSEVRKIFLEPQVKDVQGLEW 300
Score = 82.8 bits (203), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 46/93 (49%), Positives = 61/93 (65%), Gaps = 1/93 (1%)
Query: 317 SRKICIDASMSLYQFLIAVRSE-GNQLMSVDGEPTSHLMGTFYRTIRLVEHGLKPIYVFD 375
+K+ IDA ++YQFL +R E G+ LM G TSHL G FYRT+ +E GLK +YVFD
Sbjct: 24 GKKLSIDAYNAIYQFLTTIRGEDGSPLMDSHGRITSHLSGLFYRTVNFIEKGLKVVYVFD 83
Query: 376 GKPPTLKSGELNKRMEKREDAQKALAKAQEQGK 408
GKPP LK+ E+ +R RE+A K +A+ QG
Sbjct: 84 GKPPELKAKEIEERRRTREEALKMYEEARAQGN 116
Score = 53.1 bits (126), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 45/73 (61%), Gaps = 2/73 (2%)
Query: 232 FIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGWLYKEAREL 291
+D+ IL+G D+ I+GIGPK A++LIK++ IE I E + ++ E + E R++
Sbjct: 229 LVDIGILVGTDFNIGIKGIGPKTALKLIKKYGKIENIKEVPNLSEFLPQE--VLSEVRKI 286
Query: 292 FRHPEIADPETIE 304
F P++ D + +E
Sbjct: 287 FLEPQVKDVQGLE 299
Score = 46.6 bits (109), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 35/49 (71%), Gaps = 3/49 (6%)
Query: 3 LKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSSTTQGRLDSFF 51
L+W PDE+G++K+LC ++NF+ DR++N ++ K ++++ LD +F
Sbjct: 298 LEWRQPDEEGVIKFLCDERNFSVDRVKNALTRIRKRPAASS---LDQWF 343
Score = 46.6 bits (109), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 31/49 (63%), Gaps = 3/49 (6%)
Query: 409 LKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSTTTQGRLDSFF 457
L+W PDE+G++K+LC ++NF+ DR++N L + R LD +F
Sbjct: 298 LEWRQPDEEGVIKFLCDERNFSVDRVKNA---LTRIRKRPAASSLDQWF 343
>gi|28380021|sp|Q980U8.2|FEN_SULSO RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
Length = 349
Score = 102 bits (255), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 61/166 (36%), Positives = 99/166 (59%), Gaps = 14/166 (8%)
Query: 60 KAPCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHL---- 115
+AP E EA+ A + K G +A A++D DA+ FG+ L+R++T + RKLP ++ ++
Sbjct: 148 QAPSEGEAEAAYLNKLGLSWAAASQDYDAILFGAKRLVRNLTITGKRKLPNKDVYVEIKP 207
Query: 116 -----EKVLEGMELSHEEFIDLCILLGCDYC-DSIRGIGPKRAIELIKEHRSIEKILENI 169
E +L+ + ++ E+ ID+ IL+G DY D IRGIGP+RA+++IK++ IEK +E
Sbjct: 208 ELIETEILLKKLGITREQLIDIGILIGTDYNPDGIRGIGPERALKIIKKYGKIEKAMEYG 267
Query: 170 DTKKYTVPEGWLYKEARELFRHPEVADPETIEFIDLCILLGCDYCD 215
+ K + + E R LF +P+V PE E +DL G D +
Sbjct: 268 EISKKDI--NFNIDEIRGLFLNPQVVKPE--EALDLNEPNGEDIIN 309
Score = 97.8 bits (242), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 46/94 (48%), Positives = 65/94 (69%), Gaps = 1/94 (1%)
Query: 317 SRKICIDASMSLYQFLIAVR-SEGNQLMSVDGEPTSHLMGTFYRTIRLVEHGLKPIYVFD 375
+++ ID +LYQFL A+R +G LM G TSHL G FYRTI ++E G+ PIYVFD
Sbjct: 21 GKRVSIDGYNALYQFLAAIRQPDGTPLMDSQGRVTSHLSGLFYRTINILEEGVIPIYVFD 80
Query: 376 GKPPTLKSGELNKRMEKREDAQKALAKAQEQGKL 409
GKPP KS EL +R + +E+A++ L +A+ +GK+
Sbjct: 81 GKPPEQKSEELERRRKAKEEAERKLERAKSEGKI 114
Score = 56.6 bits (135), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 30/71 (42%), Positives = 45/71 (63%), Gaps = 3/71 (4%)
Query: 232 FIDLCILLGCDYC-DSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGWLYKEARE 290
ID+ IL+G DY D IRGIGP+RA+++IK++ IEK +E + K + + E R
Sbjct: 226 LIDIGILIGTDYNPDGIRGIGPERALKIIKKYGKIEKAMEYGEISKKDI--NFNIDEIRG 283
Query: 291 LFRHPEIADPE 301
LF +P++ PE
Sbjct: 284 LFLNPQVVKPE 294
>gi|384433639|ref|YP_005642997.1| flap structure-specific endonuclease [Sulfolobus solfataricus 98/2]
gi|261601793|gb|ACX91396.1| flap structure-specific endonuclease [Sulfolobus solfataricus 98/2]
Length = 351
Score = 102 bits (255), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 61/166 (36%), Positives = 99/166 (59%), Gaps = 14/166 (8%)
Query: 60 KAPCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHL---- 115
+AP E EA+ A + K G +A A++D DA+ FG+ L+R++T + RKLP ++ ++
Sbjct: 150 QAPSEGEAEAAYLNKLGLSWAAASQDYDAILFGAKRLVRNLTITGKRKLPNKDVYVEIKP 209
Query: 116 -----EKVLEGMELSHEEFIDLCILLGCDYC-DSIRGIGPKRAIELIKEHRSIEKILENI 169
E +L+ + ++ E+ ID+ IL+G DY D IRGIGP+RA+++IK++ IEK +E
Sbjct: 210 ELIETEILLKKLGITREQLIDIGILIGTDYNPDGIRGIGPERALKIIKKYGKIEKAMEYG 269
Query: 170 DTKKYTVPEGWLYKEARELFRHPEVADPETIEFIDLCILLGCDYCD 215
+ K + + E R LF +P+V PE E +DL G D +
Sbjct: 270 EISKKDI--NFNIDEIRGLFLNPQVVKPE--EALDLNEPNGEDIIN 311
Score = 97.4 bits (241), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 46/94 (48%), Positives = 65/94 (69%), Gaps = 1/94 (1%)
Query: 317 SRKICIDASMSLYQFLIAVR-SEGNQLMSVDGEPTSHLMGTFYRTIRLVEHGLKPIYVFD 375
+++ ID +LYQFL A+R +G LM G TSHL G FYRTI ++E G+ PIYVFD
Sbjct: 23 GKRVSIDGYNALYQFLAAIRQPDGTPLMDSQGRVTSHLSGLFYRTINILEEGVIPIYVFD 82
Query: 376 GKPPTLKSGELNKRMEKREDAQKALAKAQEQGKL 409
GKPP KS EL +R + +E+A++ L +A+ +GK+
Sbjct: 83 GKPPEQKSEELERRRKAKEEAERKLERAKSEGKI 116
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 30/71 (42%), Positives = 45/71 (63%), Gaps = 3/71 (4%)
Query: 232 FIDLCILLGCDYC-DSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGWLYKEARE 290
ID+ IL+G DY D IRGIGP+RA+++IK++ IEK +E + K + + E R
Sbjct: 228 LIDIGILIGTDYNPDGIRGIGPERALKIIKKYGKIEKAMEYGEISKKDI--NFNIDEIRG 285
Query: 291 LFRHPEIADPE 301
LF +P++ PE
Sbjct: 286 LFLNPQVVKPE 296
>gi|15897130|ref|NP_341735.1| flap endonuclease-1 [Sulfolobus solfataricus P2]
gi|284174372|ref|ZP_06388341.1| flap endonuclease-1 [Sulfolobus solfataricus 98/2]
gi|25310048|pir||F90158 DNA repair endo/exonuclease FEN-1 (RAD2) (rad2) [imported] -
Sulfolobus solfataricus
gi|13813313|gb|AAK40525.1| DNA repair endo/exonuclease FEN-1 (RAD2) (rad2) [Sulfolobus
solfataricus P2]
Length = 302
Score = 102 bits (254), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 61/166 (36%), Positives = 99/166 (59%), Gaps = 14/166 (8%)
Query: 60 KAPCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHL---- 115
+AP E EA+ A + K G +A A++D DA+ FG+ L+R++T + RKLP ++ ++
Sbjct: 101 QAPSEGEAEAAYLNKLGLSWAAASQDYDAILFGAKRLVRNLTITGKRKLPNKDVYVEIKP 160
Query: 116 -----EKVLEGMELSHEEFIDLCILLGCDYC-DSIRGIGPKRAIELIKEHRSIEKILENI 169
E +L+ + ++ E+ ID+ IL+G DY D IRGIGP+RA+++IK++ IEK +E
Sbjct: 161 ELIETEILLKKLGITREQLIDIGILIGTDYNPDGIRGIGPERALKIIKKYGKIEKAMEYG 220
Query: 170 DTKKYTVPEGWLYKEARELFRHPEVADPETIEFIDLCILLGCDYCD 215
+ K + + E R LF +P+V PE E +DL G D +
Sbjct: 221 EISKKDI--NFNIDEIRGLFLNPQVVKPE--EALDLNEPNGEDIIN 262
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 35/67 (52%), Positives = 48/67 (71%)
Query: 343 MSVDGEPTSHLMGTFYRTIRLVEHGLKPIYVFDGKPPTLKSGELNKRMEKREDAQKALAK 402
M G TSHL G FYRTI ++E G+ PIYVFDGKPP KS EL +R + +E+A++ L +
Sbjct: 1 MDSQGRVTSHLSGLFYRTINILEEGVIPIYVFDGKPPEQKSEELERRRKAKEEAERKLER 60
Query: 403 AQEQGKL 409
A+ +GK+
Sbjct: 61 AKSEGKI 67
Score = 56.2 bits (134), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 30/71 (42%), Positives = 45/71 (63%), Gaps = 3/71 (4%)
Query: 232 FIDLCILLGCDYC-DSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGWLYKEARE 290
ID+ IL+G DY D IRGIGP+RA+++IK++ IEK +E + K + + E R
Sbjct: 179 LIDIGILIGTDYNPDGIRGIGPERALKIIKKYGKIEKAMEYGEISKKDI--NFNIDEIRG 236
Query: 291 LFRHPEIADPE 301
LF +P++ PE
Sbjct: 237 LFLNPQVVKPE 247
>gi|119719220|ref|YP_919715.1| flap endonuclease-1 [Thermofilum pendens Hrk 5]
gi|166973708|sp|A1RWY2.1|FEN_THEPD RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|119524340|gb|ABL77712.1| flap endonuclease 1 [Thermofilum pendens Hrk 5]
Length = 346
Score = 100 bits (250), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 56/147 (38%), Positives = 87/147 (59%), Gaps = 15/147 (10%)
Query: 60 KAPCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFH----- 114
+AP E EAQ A MVK G +A+ ++D D+L FGS L+R++ + RKLP ++ +
Sbjct: 150 EAPSEGEAQAAYMVKKGDAWASGSQDFDSLLFGSPRLVRNLAITGKRKLPRKDVYVEVKP 209
Query: 115 ----LEKVLEGMELSHEEFIDLCILLGCDYC-DSIRGIGPKRAIELIKEHRSIEKILENI 169
LE++L ++H++ + + IL+G DY + RGIG K+A++L+KE + EKI ++
Sbjct: 210 EIVELEELLRVHGITHQQLVVIGILVGTDYAPEGARGIGVKKALKLVKELKDPEKIFRSV 269
Query: 170 DTKKYTVPEGWLYKEARELFRHPEVAD 196
+ PE L ELF HPEV D
Sbjct: 270 EWSSDVPPEKIL-----ELFLHPEVTD 291
Score = 94.0 bits (232), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 50/111 (45%), Positives = 67/111 (60%), Gaps = 1/111 (0%)
Query: 301 ETIELVADVAPSSIRESRKICIDASMSLYQFLIAVR-SEGNQLMSVDGEPTSHLMGTFYR 359
E +E VA + I IDA SLYQFL +R +G L+ G TSHL G FYR
Sbjct: 7 ELVEPVAKEVELGFFSKKVIAIDAYNSLYQFLATIRQKDGTPLLDAQGNVTSHLNGLFYR 66
Query: 360 TIRLVEHGLKPIYVFDGKPPTLKSGELNKRMEKREDAQKALAKAQEQGKLK 410
TI +E G+KP+YVFDG+PP LK EL +R + + +A+K +A E+G L+
Sbjct: 67 TINYIELGIKPVYVFDGRPPELKQKELERRYQIKVEAEKKYREAIERGDLE 117
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 40/69 (57%), Gaps = 6/69 (8%)
Query: 232 FIDLCILLGCDYC-DSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGWLYKEARE 290
+ + IL+G DY + RGIG K+A++L+KE + EKI +++ PE L E
Sbjct: 228 LVVIGILVGTDYAPEGARGIGVKKALKLVKELKDPEKIFRSVEWSSDVPPEKIL-----E 282
Query: 291 LFRHPEIAD 299
LF HPE+ D
Sbjct: 283 LFLHPEVTD 291
>gi|320101275|ref|YP_004176867.1| flap endonuclease 1 [Desulfurococcus mucosus DSM 2162]
gi|319753627|gb|ADV65385.1| flap endonuclease 1 [Desulfurococcus mucosus DSM 2162]
Length = 356
Score = 100 bits (250), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 51/116 (43%), Positives = 75/116 (64%), Gaps = 10/116 (8%)
Query: 60 KAPCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQE------- 112
+AP E EAQ A M + G YA+A++D D+L FGS L+R++T S RKLP +E
Sbjct: 152 QAPAEGEAQAAYMARKGDAYASASQDYDSLLFGSPRLVRNLTISGRRKLPRREEYVEVKP 211
Query: 113 --FHLEKVLEGMELSHEEFIDLCILLGCDYC-DSIRGIGPKRAIELIKEHRSIEKI 165
L+K+L + +++E +D+ ILLG DY D GIGPK+A++L+K + S+EKI
Sbjct: 212 EVIELDKLLSKLGVTYENLVDIGILLGTDYNPDGFEGIGPKKALQLVKVYGSVEKI 267
Score = 95.9 bits (237), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 48/95 (50%), Positives = 62/95 (65%), Gaps = 1/95 (1%)
Query: 317 SRKICIDASMSLYQFLIAVR-SEGNQLMSVDGEPTSHLMGTFYRTIRLVEHGLKPIYVFD 375
R I ID +LYQFL A+R +G LM G TSHL G FYRTI +VE G+KP+YVFD
Sbjct: 25 GRVIAIDGYNALYQFLAAIRQPDGTPLMDGSGRITSHLSGLFYRTINIVEAGIKPVYVFD 84
Query: 376 GKPPTLKSGELNKRMEKREDAQKALAKAQEQGKLK 410
GKPP LK+ E+ +R RE+A + +A + G L+
Sbjct: 85 GKPPELKAKEIERRRVVREEAARKYEEAVQAGDLE 119
Score = 48.1 bits (113), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 32/86 (37%), Positives = 43/86 (50%), Gaps = 19/86 (22%)
Query: 186 RELFRHPEVAD--PETIEFIDLCILLGCDYCDSIRGIGPKRAIELLYSFIDLCILLGCDY 243
R+L R E + PE IE L LG Y + +D+ ILLG DY
Sbjct: 198 RKLPRREEYVEVKPEVIELDKLLSKLGVTYEN----------------LVDIGILLGTDY 241
Query: 244 C-DSIRGIGPKRAIELIKEHRSIEKI 268
D GIGPK+A++L+K + S+EKI
Sbjct: 242 NPDGFEGIGPKKALQLVKVYGSVEKI 267
>gi|389860888|ref|YP_006363128.1| flap endonuclease-1 [Thermogladius cellulolyticus 1633]
gi|388525792|gb|AFK50990.1| flap endonuclease-1 [Thermogladius cellulolyticus 1633]
Length = 353
Score = 100 bits (248), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 61/162 (37%), Positives = 91/162 (56%), Gaps = 28/162 (17%)
Query: 60 KAPCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLE--- 116
+AP E EAQ A MV+ G YA+A++D D+L FGS L+R++T S RKLP ++ ++E
Sbjct: 152 QAPAEGEAQAAFMVRRGDAYASASQDYDSLLFGSPRLVRNLTISGKRKLPRKDAYVEVKP 211
Query: 117 ------KVLEGMELSHEEFIDLCILLGCDYC-DSIRGIGPKRAIELIKEHRSIEKILENI 169
K+ E + ++ E+ ID+ ILLG DY + GIGPK A+ LI+ + SIEKI
Sbjct: 212 EVIELSKLTEKLGITREQLIDIGILLGTDYNPEGFEGIGPKTALTLIRTYGSIEKI---- 267
Query: 170 DTKKYTVPEGWLYK-------EARELFRHPEVADPETIEFID 204
P+G+L + + F HP V +E+I+
Sbjct: 268 -------PKGYLRTREEVDVVKIKNYFLHPPVTAEYKLEWIE 302
Score = 99.4 bits (246), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 60/157 (38%), Positives = 82/157 (52%), Gaps = 14/157 (8%)
Query: 320 ICIDASMSLYQFLIAVRS-EGNQLMSVDGEPTSHLMGTFYRTIRLVEHGLKPIYVFDGKP 378
+ +D +LYQFL A+R +G+ LM G TSHL G FYRTI LVE G+KP+YVFDG P
Sbjct: 28 VVVDGYNALYQFLAAIRGPDGSPLMDSSGRITSHLSGLFYRTINLVEEGIKPVYVFDGNP 87
Query: 379 PTLKSGELNKRMEKREDAQKALAKAQEQGKLKWSDPDEDGLVKYLCGDKNFAEDRIRNGA 438
P LK EL +R RE+A K +A ++G L+ + +Y D + A
Sbjct: 88 PELKIKELERRKALREEAAKKYEEAVKEGDLEAAR-------RYAMMSSKLTSDMVEE-A 139
Query: 439 KKLLKARS-----TTTQGRLDSFFTIRREEKRKSRCQ 470
K+LLK +G + F +RR + S Q
Sbjct: 140 KRLLKVMGIPWVQAPAEGEAQAAFMVRRGDAYASASQ 176
Score = 45.4 bits (106), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 34/53 (64%), Gaps = 3/53 (5%)
Query: 408 KLKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSTTTQGR---LDSFF 457
KL+W +PD+ G+V+ L D +F E+R++N ++L KA +GR LD +F
Sbjct: 297 KLEWIEPDQKGIVEVLVKDHDFNEERVKNAVERLSKAYKEFLKGRQLGLDQWF 349
Score = 43.9 bits (102), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 33/52 (63%), Gaps = 3/52 (5%)
Query: 3 LKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSSTTQGR---LDSFF 51
L+W +PD+ G+V+ L D +F E+R++N ++L KA +GR LD +F
Sbjct: 298 LEWIEPDQKGIVEVLVKDHDFNEERVKNAVERLSKAYKEFLKGRQLGLDQWF 349
Score = 42.7 bits (99), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 21/38 (55%), Positives = 26/38 (68%), Gaps = 1/38 (2%)
Query: 232 FIDLCILLGCDYC-DSIRGIGPKRAIELIKEHRSIEKI 268
ID+ ILLG DY + GIGPK A+ LI+ + SIEKI
Sbjct: 230 LIDIGILLGTDYNPEGFEGIGPKTALTLIRTYGSIEKI 267
>gi|323454359|gb|EGB10229.1| hypothetical protein AURANDRAFT_53007 [Aureococcus anophagefferens]
Length = 538
Score = 99.8 bits (247), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 58/153 (37%), Positives = 82/153 (53%), Gaps = 12/153 (7%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEA----RKLPVQEFHLE 116
AP EAEA C A+V+ G TEDMDALTFG+ +++++ E K P E L
Sbjct: 160 APGEAEASCVALVRHGACDFVVTEDMDALTFGAAKMVKNLFDVEGARAKEKRPAYEIDLA 219
Query: 117 KVLEGMEL----SHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTK 172
L + + F+D CIL GCDY D + G+GP A +L+K H S+E+ + + K
Sbjct: 220 AALRELGPRGLGTMAAFVDFCILCGCDYLDHVPGVGPATAAKLLKSHASLERAVVRVGRK 279
Query: 173 ---KYTVPEGWLYKEARELFRHPE-VADPETIE 201
+ P GW ++ AR LF P VA ET++
Sbjct: 280 VGGRPVAPHGWDFRAARALFFAPTVVAAGETVD 312
Score = 87.4 bits (215), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 46/109 (42%), Positives = 67/109 (61%), Gaps = 9/109 (8%)
Query: 306 VADVAPSSIRES-------RKICIDASMSLYQFLIAVRSEGN--QLMSVDGEPTSHLMGT 356
+ D AP +I E+ R++ +DASM LY FL A+R+ G+ L + GE TSHL G
Sbjct: 10 IRDNAPGAIVETSLKDYMGRRLAVDASMHLYSFLAAIRTGGDATHLTNSRGEATSHLQGF 69
Query: 357 FYRTIRLVEHGLKPIYVFDGKPPTLKSGELNKRMEKREDAQKALAKAQE 405
RT+R++E G KP++VFDG P LK L R E + A++ LA+A++
Sbjct: 70 ANRTLRMLEAGAKPVFVFDGAAPELKGKTLKGRSEAKRAAEEKLARARD 118
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 40/116 (34%), Positives = 61/116 (52%), Gaps = 9/116 (7%)
Query: 212 DYCDSIRGIGPKRAIELLYSFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILEN 271
D ++R +GP R + + +F+D CIL GCDY D + G+GP A +L+K H S+E+ +
Sbjct: 217 DLAAALRELGP-RGLGTMAAFVDFCILCGCDYLDHVPGVGPATAAKLLKSHASLERAVVR 275
Query: 272 IDTK---KYTVPEGWLYKEARELFRHPE-IADPETIELVADVAPSSIRESRKICID 323
+ K + P GW ++ AR LF P +A ET+ D P R +D
Sbjct: 276 VGRKVGGRPVAPHGWDFRAARALFFAPTVVAAGETV----DAPPPDYAALRAFLVD 327
>gi|156937484|ref|YP_001435280.1| flap endonuclease-1 [Ignicoccus hospitalis KIN4/I]
gi|166973698|sp|A8AAC1.1|FEN_IGNH4 RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|156566468|gb|ABU81873.1| flap endonuclease 1 [Ignicoccus hospitalis KIN4/I]
Length = 350
Score = 99.8 bits (247), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 51/146 (34%), Positives = 84/146 (57%), Gaps = 14/146 (9%)
Query: 60 KAPCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEK-- 117
+AP E EAQ A M G V+A+A++D D+L FGS L+R++ S RKLP + ++E
Sbjct: 152 QAPSEGEAQAAYMAAKGDVWASASQDYDSLLFGSPRLVRNLAVSGRRKLPNKNVYVEVKP 211
Query: 118 -------VLEGMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENID 170
VLE + ++ E+ + + +L+G DY ++G+GPK A+ +K + +E++L +
Sbjct: 212 EEITLKCVLEELGITREQLVAIAVLIGTDYTPGVKGVGPKTALRYVKSYGDLERVLTALG 271
Query: 171 TKKYTVPEGWLYKEARELFRHPEVAD 196
V + LY EA F +P+V D
Sbjct: 272 -----VDDKELYLEAYNFFLNPQVTD 292
Score = 88.6 bits (218), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 42/92 (45%), Positives = 62/92 (67%), Gaps = 1/92 (1%)
Query: 317 SRKICIDASMSLYQFLIAVRSE-GNQLMSVDGEPTSHLMGTFYRTIRLVEHGLKPIYVFD 375
++ + +DA +LYQFL A+R E G LM G TSHL G FYRTI ++E+G+K YVFD
Sbjct: 25 NKSVALDAYNTLYQFLAAIRGEDGRPLMDSKGRVTSHLSGLFYRTINMLENGIKVAYVFD 84
Query: 376 GKPPTLKSGELNKRMEKREDAQKALAKAQEQG 407
G PP LK+ E+ +R + +++A+K +A +G
Sbjct: 85 GAPPKLKTREIERRQKLKQEAEKKYEEAVRRG 116
Score = 48.1 bits (113), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 38/68 (55%), Gaps = 5/68 (7%)
Query: 232 FIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGWLYKEAREL 291
+ + +L+G DY ++G+GPK A+ +K + +E++L + V + LY EA
Sbjct: 230 LVAIAVLIGTDYTPGVKGVGPKTALRYVKSYGDLERVLTALG-----VDDKELYLEAYNF 284
Query: 292 FRHPEIAD 299
F +P++ D
Sbjct: 285 FLNPQVTD 292
Score = 39.7 bits (91), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 31/55 (56%), Gaps = 3/55 (5%)
Query: 3 LKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKA---RSSTTQGRLDSFFTIR 54
L W PD +++ L + +F E+R+R ++L+KA + ST Q LD FF R
Sbjct: 296 LVWRRPDPQKIIEILVYEHDFNEERVRKAIERLMKAWKEKLSTKQSTLDMFFKKR 350
>gi|332796311|ref|YP_004457811.1| XPG I domain-containing protein [Acidianus hospitalis W1]
gi|332694046|gb|AEE93513.1| XPG I domain protein [Acidianus hospitalis W1]
Length = 344
Score = 99.4 bits (246), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 54/150 (36%), Positives = 88/150 (58%), Gaps = 12/150 (8%)
Query: 60 KAPCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFH----- 114
+AP E EA+ A + G +A A++D D+L FG+N L+R++T + RKLP ++ +
Sbjct: 143 QAPSEGEAEAAYLCSQGYTWAAASQDYDSLLFGANKLIRNLTLTGKRKLPKKDVYVEIKP 202
Query: 115 ----LEKVLEGMELSHEEFIDLCILLGCDY-CDSIRGIGPKRAIELIKEHRSIEKILENI 169
LE +L+ ++ E+ +D+ IL+G DY D I+GIGP A+ +IK++ IEK +E
Sbjct: 203 ELIELEDLLKKFGITREQLVDIGILIGTDYDPDGIKGIGPVTALRIIKKYGKIEKAVEKG 262
Query: 170 DTKKYTVPEGWLYKEARELFRHPEVADPET 199
+ KY + E R +F +P V PE+
Sbjct: 263 ELPKYIL--DLNINEIRSIFLNPPVVKPES 290
Score = 88.6 bits (218), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 42/75 (56%), Positives = 53/75 (70%), Gaps = 1/75 (1%)
Query: 316 ESRKICIDASMSLYQFLIAVR-SEGNQLMSVDGEPTSHLMGTFYRTIRLVEHGLKPIYVF 374
+ +K+ IDA ++YQFL A+R +G LM G TSHL G FYRTI L+E G+ PIYVF
Sbjct: 15 KGKKVSIDAYNAIYQFLTAIRQPDGTPLMDSQGRVTSHLSGIFYRTISLLEEGVIPIYVF 74
Query: 375 DGKPPTLKSGELNKR 389
DGKPP LK+ EL +R
Sbjct: 75 DGKPPELKAQELERR 89
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 33/93 (35%), Positives = 51/93 (54%), Gaps = 6/93 (6%)
Query: 232 FIDLCILLGCDY-CDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGWLYKEARE 290
+D+ IL+G DY D I+GIGP A+ +IK++ IEK +E + KY + E R
Sbjct: 221 LVDIGILIGTDYDPDGIKGIGPVTALRIIKKYGKIEKAVEKGELPKYIL--DLNINEIRS 278
Query: 291 LFRHPEIADPETIELVADVAPSSIRESRKICID 323
+F +P + PE+ D+ + E +KI ID
Sbjct: 279 IFLNPPVVKPES---SLDLKEPNEEEIKKILID 308
Score = 43.5 bits (101), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 30/100 (30%), Positives = 49/100 (49%), Gaps = 16/100 (16%)
Query: 362 RLVEHGLKPIYVFDGKPPTLKSGELNKRMEKREDAQKALAKAQEQGKLKWSDPDEDGLVK 421
+ VE G P Y+ D ++S LN + K E + L +P+E+ + K
Sbjct: 257 KAVEKGELPKYILDLNINEIRSIFLNPPVVKPESS------------LDLKEPNEEEIKK 304
Query: 422 YLCGDKNFAEDRIRNGAKKLLK----ARSTTTQGRLDSFF 457
L + NF+EDR+ NG ++L+K A+ + Q LD +F
Sbjct: 305 ILIDEHNFSEDRVTNGIERLIKAGKEAKGASRQSGLDQWF 344
Score = 40.4 bits (93), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 34/54 (62%), Gaps = 4/54 (7%)
Query: 2 TLKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLK----ARSSTTQGRLDSFF 51
+L +P+E+ + K L + NF+EDR+ NG ++L+K A+ ++ Q LD +F
Sbjct: 291 SLDLKEPNEEEIKKILIDEHNFSEDRVTNGIERLIKAGKEAKGASRQSGLDQWF 344
>gi|429965038|gb|ELA47035.1| hypothetical protein VCUG_01480 [Vavraia culicis 'floridensis']
Length = 335
Score = 99.0 bits (245), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 55/126 (43%), Positives = 77/126 (61%), Gaps = 11/126 (8%)
Query: 64 EAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVLEGME 123
EAEA CA + + G V TEDMDAL F + +LL++ K V E+ L+++L M+
Sbjct: 155 EAEAFCATLCRKGIVDYVCTEDMDALCFRAPVLLKNFV-----KDTVAEYRLDEILRDMK 209
Query: 124 LSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGWLYK 183
L F+DLCILLGCDY +I+GIGP +A LI+ H +IE I++ +D Y Y+
Sbjct: 210 LEFSAFMDLCILLGCDYAGTIKGIGPMKAETLIRRHGNIENIVKELDITDYE------YE 263
Query: 184 EARELF 189
+ARE F
Sbjct: 264 KARETF 269
Score = 97.8 bits (242), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 45/96 (46%), Positives = 69/96 (71%), Gaps = 1/96 (1%)
Query: 311 PSSIRESRKICIDASMSLYQFLIAVRSEGNQLMSVDGEPTSHLMGTFYRTIRLVEHGLKP 370
P S ++K+ DAS+ YQ+LIA+RS+G QL + + TSH+ G FY+ I L E G+KP
Sbjct: 20 PLSFYRTKKMAFDASLLTYQYLIAIRSDGAQL-AYNSTSTSHISGFFYKIINLAEIGIKP 78
Query: 371 IYVFDGKPPTLKSGELNKRMEKREDAQKALAKAQEQ 406
++VFDGKPP +KS E+ +R E+R++A + ++A+EQ
Sbjct: 79 LFVFDGKPPQVKSEEIARRNERRKNAAEKYSEAEEQ 114
Score = 63.2 bits (152), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 33/70 (47%), Positives = 47/70 (67%), Gaps = 7/70 (10%)
Query: 224 RAIELLYS-FIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEG 282
R ++L +S F+DLCILLGCDY +I+GIGP +A LI+ H +IE I++ +D Y
Sbjct: 206 RDMKLEFSAFMDLCILLGCDYAGTIKGIGPMKAETLIRRHGNIENIVKELDITDYE---- 261
Query: 283 WLYKEARELF 292
Y++ARE F
Sbjct: 262 --YEKARETF 269
>gi|375083121|ref|ZP_09730153.1| flap endonuclease-1 [Thermococcus litoralis DSM 5473]
gi|374742207|gb|EHR78613.1| flap endonuclease-1 [Thermococcus litoralis DSM 5473]
Length = 340
Score = 99.0 bits (245), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 50/94 (53%), Positives = 61/94 (64%), Gaps = 1/94 (1%)
Query: 317 SRKICIDASMSLYQFLIAVRS-EGNQLMSVDGEPTSHLMGTFYRTIRLVEHGLKPIYVFD 375
RK+ IDA ++YQFL +R +G LM G TSHL G FYRTI L+E G+KP YVFD
Sbjct: 21 GRKVAIDAFNAIYQFLSTIRQRDGTPLMDSKGRITSHLSGLFYRTINLMEAGIKPAYVFD 80
Query: 376 GKPPTLKSGELNKRMEKREDAQKALAKAQEQGKL 409
GKPP K EL KR E RE+AQ+ +A +G L
Sbjct: 81 GKPPEFKKKELEKRAEAREEAQEKWEEALARGDL 114
Score = 91.7 bits (226), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 52/154 (33%), Positives = 89/154 (57%), Gaps = 20/154 (12%)
Query: 60 KAPCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFH----- 114
+AP E EAQ A M G V+A+A++D D+L FG+ L+R++T + RKLP ++ +
Sbjct: 148 QAPSEGEAQAAYMASKGHVWASASQDYDSLLFGTPRLVRNLTITGKRKLPGKDIYVEVKP 207
Query: 115 ----LEKVLEGMELSHEEFIDLCILLGCDYC-DSIRGIGPKRAIELIKEHRS-IEKILEN 168
LE+VL+ ++++ E+ ++L IL+G DY I+GIGPK+A+E++K + + K +
Sbjct: 208 ELIVLEEVLKELKITREKLVELAILVGTDYNPGGIKGIGPKKALEIVKYSKDPLAKYQKM 267
Query: 169 IDTKKYTVPEGWLYKEARELFRHPEVADPETIEF 202
D Y + +E F +P D +E+
Sbjct: 268 SDVDLYAI---------KEFFLNPPTTDEYKLEW 292
Score = 55.5 bits (132), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 23/50 (46%), Positives = 37/50 (74%)
Query: 408 KLKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSTTTQGRLDSFF 457
KL+W PDE+G++K+LC + +F+E+R++NG ++L KA Q LDS+F
Sbjct: 289 KLEWKMPDEEGILKFLCDEHDFSEERVKNGLERLKKAVKAGRQFTLDSWF 338
Score = 54.3 bits (129), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/49 (44%), Positives = 37/49 (75%)
Query: 3 LKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSSTTQGRLDSFF 51
L+W PDE+G++K+LC + +F+E+R++NG ++L KA + Q LDS+F
Sbjct: 290 LEWKMPDEEGILKFLCDEHDFSEERVKNGLERLKKAVKAGRQFTLDSWF 338
>gi|374632950|ref|ZP_09705317.1| flap structure-specific endonuclease [Metallosphaera
yellowstonensis MK1]
gi|373524434|gb|EHP69311.1| flap structure-specific endonuclease [Metallosphaera
yellowstonensis MK1]
Length = 301
Score = 98.6 bits (244), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 59/157 (37%), Positives = 94/157 (59%), Gaps = 18/157 (11%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLE---- 116
AP E EA+ A + +A A++D D+L FG+ L+R++T + RKLP ++ ++E
Sbjct: 102 APSEGEAEAAYLNYKNITFAAASQDYDSLLFGAKRLIRNLTITGKRKLPNKDVYVEIKPE 161
Query: 117 -----KVLEGMELSHEEFIDLCILLGCDYC-DSIRGIGPKRAIELIKEHRSIEKILENID 170
++L + L+ E+ ID+ IL+G DY D I+GIGPK A +LI+ ++SIE I
Sbjct: 162 MIELDELLRKLGLTREQLIDVAILIGTDYNPDGIKGIGPKTAYKLIRTYKSIEAI----- 216
Query: 171 TKKYTVPEG--WLYKEARELFRHPEVADP-ETIEFID 204
++ PE + YK+ RE+F PEV +P E++E D
Sbjct: 217 DRRELNPELIYFDYKKIREIFLKPEVVEPSESLELRD 253
Score = 80.1 bits (196), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 37/67 (55%), Positives = 46/67 (68%)
Query: 343 MSVDGEPTSHLMGTFYRTIRLVEHGLKPIYVFDGKPPTLKSGELNKRMEKREDAQKALAK 402
M G TSHL G FYRT+ L+E G+ P+YVFDGKPP LK EL R +E+A++ L K
Sbjct: 1 MDRKGRVTSHLNGVFYRTVNLIEEGVIPVYVFDGKPPELKMEELENRRRLKEEAERKLVK 60
Query: 403 AQEQGKL 409
A+E GKL
Sbjct: 61 AKELGKL 67
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 34/78 (43%), Positives = 50/78 (64%), Gaps = 9/78 (11%)
Query: 232 FIDLCILLGCDYC-DSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEG--WLYKEA 288
ID+ IL+G DY D I+GIGPK A +LI+ ++SIE I ++ PE + YK+
Sbjct: 179 LIDVAILIGTDYNPDGIKGIGPKTAYKLIRTYKSIEAI-----DRRELNPELIYFDYKKI 233
Query: 289 RELFRHPEIADP-ETIEL 305
RE+F PE+ +P E++EL
Sbjct: 234 REIFLKPEVVEPSESLEL 251
>gi|161528211|ref|YP_001582037.1| flap endonuclease-1 [Nitrosopumilus maritimus SCM1]
gi|226700954|sp|A9A4B0.1|FEN_NITMS RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|160339512|gb|ABX12599.1| XPG I domain protein [Nitrosopumilus maritimus SCM1]
Length = 340
Score = 98.2 bits (243), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 56/159 (35%), Positives = 91/159 (57%), Gaps = 27/159 (16%)
Query: 60 KAPCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLE--- 116
+AP E EA A + G+ YA+A++D D++ G+ L+R+ T S RK+P + +++
Sbjct: 148 EAPSEGEATAAHLTNTGQAYASASQDFDSILCGAKRLVRNFTNSGRRKIPNKNTYIDIVP 207
Query: 117 ------KVLEGMELSHEEFIDLCILLGCDYC-DSIRGIGPKRAIELIKEHRSIEKI---- 165
K L+ +EL+ EE ID+ IL+G D+ + +GPK A+++IK+H +E+I
Sbjct: 208 EIIETQKTLDSLELTREELIDVGILIGTDFNPNGFERVGPKTALKMIKQHSKLEEIPQIQ 267
Query: 166 --LENIDTKKYTVPEGWLYKEARELFRHPEVADPETIEF 202
LE ID Y+E R++F +PEVAD + I F
Sbjct: 268 EQLEEID-----------YQEIRKIFLNPEVADVKEIVF 295
Score = 86.3 bits (212), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 45/113 (39%), Positives = 70/113 (61%), Gaps = 8/113 (7%)
Query: 317 SRKICIDASMSLYQFLIAVRS-EGNQLMSVDGEPTSHLMGTFYRTIRLVEHGLKPIYVFD 375
++ I IDA ++YQFL ++R +G QL +G TSHL G YR + + G+KP+YVFD
Sbjct: 21 NKVIAIDAYNAIYQFLASIRGPDGLQLSDSEGRITSHLSGLLYRNVNFLSLGIKPVYVFD 80
Query: 376 GKPPTLKSGELNKRMEKREDA----QKALAKAQEQGKLKWSDPD---EDGLVK 421
GKPP+LK+ E+ +R + + DA +KA+A + K++ +DG+VK
Sbjct: 81 GKPPSLKTAEIERRKQIKMDATIKYEKAIADGNMEDARKYAQQTTSMKDGMVK 133
Score = 49.3 bits (116), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 45/79 (56%), Gaps = 18/79 (22%)
Query: 232 FIDLCILLGCDYC-DSIRGIGPKRAIELIKEHRSIEKI------LENIDTKKYTVPEGWL 284
ID+ IL+G D+ + +GPK A+++IK+H +E+I LE ID
Sbjct: 226 LIDVGILIGTDFNPNGFERVGPKTALKMIKQHSKLEEIPQIQEQLEEID----------- 274
Query: 285 YKEARELFRHPEIADPETI 303
Y+E R++F +PE+AD + I
Sbjct: 275 YQEIRKIFLNPEVADVKEI 293
>gi|218884379|ref|YP_002428761.1| flap endonuclease-1 [Desulfurococcus kamchatkensis 1221n]
gi|322812496|pdb|3ORY|A Chain A, Crystal Structure Of Flap Endonuclease 1 From
Hyperthermophilic Archaeon Desulfurococcus Amylolyticus
gi|218765995|gb|ACL11394.1| Flap structure-specific endonuclease [Desulfurococcus kamchatkensis
1221n]
Length = 363
Score = 98.2 bits (243), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 59/163 (36%), Positives = 87/163 (53%), Gaps = 14/163 (8%)
Query: 314 IRESRKICIDASMSLYQFLIAVR-SEGNQLMSVDGEPTSHLMGTFYRTIRLVEHGLKPIY 372
I + I ID +LYQFL A+R +G LM +G TSHL G FYRTI +VE G+KP+Y
Sbjct: 32 ILHGKIIVIDGYNALYQFLAAIRQPDGTPLMDNNGRITSHLSGLFYRTINIVEAGIKPVY 91
Query: 373 VFDGKPPTLKSGELNKRMEKREDAQKALAKAQEQGKLKWSDPDEDGLVKYLCGDKNFAED 432
VFDGKPP LK+ E+ +R +E+A K +A + G L+ + +Y E+
Sbjct: 92 VFDGKPPELKAREIERRKAVKEEAAKKYEEAVQSGDLELAR-------RYAMMSAKLTEE 144
Query: 433 RIRNGAKKLLKARS-----TTTQGRLDSFFTIRREEKRKSRCQ 470
+R+ AK LL A +G + + +++ + S Q
Sbjct: 145 MVRD-AKSLLDAMGIPWVQAPAEGEAQAAYIVKKGDAYASASQ 186
Score = 97.8 bits (242), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 60/153 (39%), Positives = 86/153 (56%), Gaps = 14/153 (9%)
Query: 60 KAPCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQE------- 112
+AP E EAQ A +VK G YA+A++D D+L FGS L+R++T S RKLP +
Sbjct: 162 QAPAEGEAQAAYIVKKGDAYASASQDYDSLLFGSPKLVRNLTISGRRKLPRKNEYVEVKP 221
Query: 113 --FHLEKVLEGMELSHEEFIDLCILLGCDYC-DSIRGIGPKRAIELIKEHRSIEKILENI 169
L+K+L + ++ E ID+ ILLG DY D GIGPK+A++L+K + IEKI + I
Sbjct: 222 ELIELDKLLVQLGITLENLIDIGILLGTDYNPDGFEGIGPKKALQLVKAYGGIEKIPKPI 281
Query: 170 DTKKYTVPEGWLYKEARELFRHPEVADPETIEF 202
V ++ F P+V D IE+
Sbjct: 282 LKSPIEVD----VIAIKKYFLQPQVTDNYRIEW 310
Score = 48.1 bits (113), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 30/77 (38%), Positives = 39/77 (50%), Gaps = 17/77 (22%)
Query: 197 PETIEFIDLCILLGCDYCDSIRGIGPKRAIELLYSFIDLCILLGCDYC-DSIRGIGPKRA 255
PE IE L + LG L + ID+ ILLG DY D GIGPK+A
Sbjct: 221 PELIELDKLLVQLGI----------------TLENLIDIGILLGTDYNPDGFEGIGPKKA 264
Query: 256 IELIKEHRSIEKILENI 272
++L+K + IEKI + I
Sbjct: 265 LQLVKAYGGIEKIPKPI 281
>gi|352681676|ref|YP_004892200.1| flap-structure endonuclease [Thermoproteus tenax Kra 1]
gi|350274475|emb|CCC81120.1| flap-structure endonuclease [Thermoproteus tenax Kra 1]
Length = 346
Score = 97.8 bits (242), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 48/93 (51%), Positives = 62/93 (66%), Gaps = 1/93 (1%)
Query: 317 SRKICIDASMSLYQFLIAVR-SEGNQLMSVDGEPTSHLMGTFYRTIRLVEHGLKPIYVFD 375
R I +DA +LYQFL ++R +G LM G TSHL G FYRTI LVE G++P+YVFD
Sbjct: 25 GRVIALDAYNALYQFLASIRQPDGTPLMDSRGRVTSHLNGLFYRTINLVEAGIRPVYVFD 84
Query: 376 GKPPTLKSGELNKRMEKREDAQKALAKAQEQGK 408
GKPP LK E+ R +E A++ +AKA +GK
Sbjct: 85 GKPPELKRREIEARRAAKEKAREQMAKAAAEGK 117
Score = 94.0 bits (232), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 56/152 (36%), Positives = 82/152 (53%), Gaps = 12/152 (7%)
Query: 60 KAPCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARK-------LPVQE 112
+AP E EAQ A M G + ++D D+L FG+ L+R++ S RK +P +
Sbjct: 152 QAPSEGEAQAAHMAAKGSAWGAGSQDYDSLLFGAPRLVRNLAVSSRRKVGEEYVEVPPEV 211
Query: 113 FHLEKVLEGMEL-SHEEFIDLCILLGCDYC-DSIRGIGPKRAIELIKEHRSIEKILENID 170
LE L ++L S E+ IDL ILLG DY D + G+GP+RA+++I+EH S+E L +
Sbjct: 212 IELESALRALKLKSREQLIDLAILLGTDYNPDGVPGVGPQRALKIIQEHGSLENALRTV- 270
Query: 171 TKKYTVPEGWLYKEARELFRHPEVADPETIEF 202
K P L E + +F P D +EF
Sbjct: 271 LKAVEWPVDPL--EIKRMFLSPPATDNYRVEF 300
Score = 50.1 bits (118), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/42 (50%), Positives = 30/42 (71%), Gaps = 1/42 (2%)
Query: 232 FIDLCILLGCDYC-DSIRGIGPKRAIELIKEHRSIEKILENI 272
IDL ILLG DY D + G+GP+RA+++I+EH S+E L +
Sbjct: 229 LIDLAILLGTDYNPDGVPGVGPQRALKIIQEHGSLENALRTV 270
>gi|435850378|ref|YP_007311964.1| flap structure-specific endonuclease [Methanomethylovorans
hollandica DSM 15978]
gi|433661008|gb|AGB48434.1| flap structure-specific endonuclease [Methanomethylovorans
hollandica DSM 15978]
Length = 338
Score = 97.4 bits (241), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 53/151 (35%), Positives = 87/151 (57%), Gaps = 15/151 (9%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVLE 120
AP E E+Q A MVK G A++D D+L FG++ ++R++T + RKLP + ++ E
Sbjct: 149 APSEGESQAAHMVKRGDANYVASQDYDSLLFGASFVVRNLTITGKRKLPKKNIFVDVKPE 208
Query: 121 GMELS---------HEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDT 171
MEL + I++ + +G DY + IGPK+A++LIKEHRSIEK+L+ +
Sbjct: 209 IMELGENLAELEIDQSQLIEIALCVGTDYNRGLEKIGPKKALKLIKEHRSIEKVLQAVGQ 268
Query: 172 KKYTVPEGWLYKEARELFRHPEVADPETIEF 202
+ +E ++LF +P V D T+++
Sbjct: 269 NIEDL------QEIKDLFLNPSVTDNYTLKW 293
Score = 75.5 bits (184), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 38/89 (42%), Positives = 52/89 (58%), Gaps = 1/89 (1%)
Query: 320 ICIDASMSLYQFLIAVRS-EGNQLMSVDGEPTSHLMGTFYRTIRLVEHGLKPIYVFDGKP 378
+ +DA +LYQFL +R +G L G TSHL G YR L+E G+KP++VFDGKP
Sbjct: 24 VAVDAYNTLYQFLSIIRQRDGTPLKDSRGNITSHLSGILYRMTSLMEEGIKPVFVFDGKP 83
Query: 379 PTLKSGELNKRMEKREDAQKALAKAQEQG 407
LK+ + KR RE A +A+ +G
Sbjct: 84 SHLKARTIEKRTADREKATIKWEEAKSKG 112
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 45/73 (61%), Gaps = 6/73 (8%)
Query: 232 FIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGWLYKEAREL 291
I++ + +G DY + IGPK+A++LIKEHRSIEK+L+ + + +E ++L
Sbjct: 226 LIEIALCVGTDYNRGLEKIGPKKALKLIKEHRSIEKVLQAVGQNIEDL------QEIKDL 279
Query: 292 FRHPEIADPETIE 304
F +P + D T++
Sbjct: 280 FLNPSVTDNYTLK 292
Score = 38.9 bits (89), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 30/50 (60%), Gaps = 1/50 (2%)
Query: 2 TLKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSSTTQGRLDSFF 51
TLKW PD D +V++LC +F+++R+ ++L K S Q LD +F
Sbjct: 290 TLKWKKPDTDAIVEFLCQGHDFSKERVIKACERLEKI-SGPGQRTLDQWF 338
>gi|304372804|ref|YP_003858300.1| flap endonuclease-1 [Sulfolobus islandicus M.16.27]
Length = 351
Score = 97.4 bits (241), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 47/94 (50%), Positives = 65/94 (69%), Gaps = 1/94 (1%)
Query: 317 SRKICIDASMSLYQFLIAVR-SEGNQLMSVDGEPTSHLMGTFYRTIRLVEHGLKPIYVFD 375
+K+ ID +LYQFL A+R +G LM G TSHL G FYRTI ++E G+ PIYVFD
Sbjct: 23 GKKVSIDGYNALYQFLAAIRQPDGTPLMDSHGRITSHLSGLFYRTINILEEGVIPIYVFD 82
Query: 376 GKPPTLKSGELNKRMEKREDAQKALAKAQEQGKL 409
GKPP KS EL +R + +E+A++ L +A+ +GK+
Sbjct: 83 GKPPEQKSEELERRRKIKEEAERKLERAKSEGKI 116
Score = 96.3 bits (238), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 56/156 (35%), Positives = 94/156 (60%), Gaps = 14/156 (8%)
Query: 60 KAPCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHL---- 115
+AP E EA+ A + G +A A++D D++ FG+ L+R++T + RKLP ++ ++
Sbjct: 150 QAPSEGEAEAAYLNILGFSWAAASQDYDSILFGAKRLVRNLTITGKRKLPNKDVYIDIKP 209
Query: 116 -----EKVLEGMELSHEEFIDLCILLGCDYC-DSIRGIGPKRAIELIKEHRSIEKILENI 169
E +L+ + ++ E+ ID+ IL+G DY D I+GIGP+RA+++IK++ IEK +E
Sbjct: 210 ELIETELLLKKLGITREQLIDISILIGTDYNPDGIKGIGPERALKIIKKYGKIEKAIEYG 269
Query: 170 DTKKYTVPEGWLYKEARELFRHPEVADPETIEFIDL 205
+ K + + E R LF P+V PE E +DL
Sbjct: 270 EISKRDIT--FNIDEIRSLFLKPQVVKPE--ETLDL 301
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/76 (40%), Positives = 48/76 (63%), Gaps = 4/76 (5%)
Query: 232 FIDLCILLGCDYC-DSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGWLYKEARE 290
ID+ IL+G DY D I+GIGP+RA+++IK++ IEK +E + K + + E R
Sbjct: 228 LIDISILIGTDYNPDGIKGIGPERALKIIKKYGKIEKAIEYGEISKRDIT--FNIDEIRS 285
Query: 291 LFRHPEIADP-ETIEL 305
LF P++ P ET++L
Sbjct: 286 LFLKPQVVKPEETLDL 301
Score = 42.7 bits (99), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 35/54 (64%), Gaps = 4/54 (7%)
Query: 2 TLKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLK----ARSSTTQGRLDSFF 51
TL ++P+E +V L + NF+E+R++NG ++L+K A+ ++ Q LD +F
Sbjct: 298 TLDLNEPNEKDIVNILVNEHNFSEERVKNGIERLIKAIREAKGASRQTGLDRWF 351
Score = 40.4 bits (93), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 33/53 (62%), Gaps = 4/53 (7%)
Query: 409 LKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLK----ARSTTTQGRLDSFF 457
L ++P+E +V L + NF+E+R++NG ++L+K A+ + Q LD +F
Sbjct: 299 LDLNEPNEKDIVNILVNEHNFSEERVKNGIERLIKAIREAKGASRQTGLDRWF 351
>gi|390938891|ref|YP_006402629.1| flap endonuclease 1 [Desulfurococcus fermentans DSM 16532]
gi|390191998|gb|AFL67054.1| flap endonuclease 1 [Desulfurococcus fermentans DSM 16532]
Length = 363
Score = 97.4 bits (241), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 52/116 (44%), Positives = 73/116 (62%), Gaps = 10/116 (8%)
Query: 60 KAPCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQE------- 112
+AP E EAQ A +VK G YA+A++D D+L FGS L+R++T S RKLP +
Sbjct: 162 QAPAEGEAQAAYIVKKGDAYASASQDYDSLLFGSPKLVRNLTISGRRKLPRKNEYVEVKP 221
Query: 113 --FHLEKVLEGMELSHEEFIDLCILLGCDYC-DSIRGIGPKRAIELIKEHRSIEKI 165
L+K+L + ++ E ID+ ILLG DY D GIGPK+A++L+K + IEKI
Sbjct: 222 ELIELDKLLVQLGITLENLIDIGILLGTDYNPDGFEGIGPKKALQLVKAYGGIEKI 277
Score = 97.4 bits (241), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 59/163 (36%), Positives = 86/163 (52%), Gaps = 14/163 (8%)
Query: 314 IRESRKICIDASMSLYQFLIAVR-SEGNQLMSVDGEPTSHLMGTFYRTIRLVEHGLKPIY 372
I + I ID +LYQFL A+R +G LM G TSHL G FYRTI +VE G+KP+Y
Sbjct: 32 ILHGKIIVIDGYNALYQFLAAIRQPDGTPLMDNSGRITSHLSGLFYRTINIVEAGIKPVY 91
Query: 373 VFDGKPPTLKSGELNKRMEKREDAQKALAKAQEQGKLKWSDPDEDGLVKYLCGDKNFAED 432
VFDGKPP LK+ E+ +R +E+A K +A + G L+ + +Y E+
Sbjct: 92 VFDGKPPELKAREIERRKAVKEEAAKKYEEAVQSGDLELAR-------RYAMMSAKLTEE 144
Query: 433 RIRNGAKKLLKARS-----TTTQGRLDSFFTIRREEKRKSRCQ 470
+R+ AK LL A +G + + +++ + S Q
Sbjct: 145 MVRD-AKSLLDAMGIPWVQAPAEGEAQAAYIVKKGDAYASASQ 186
Score = 48.1 bits (113), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 29/73 (39%), Positives = 37/73 (50%), Gaps = 17/73 (23%)
Query: 197 PETIEFIDLCILLGCDYCDSIRGIGPKRAIELLYSFIDLCILLGCDYC-DSIRGIGPKRA 255
PE IE L + LG L + ID+ ILLG DY D GIGPK+A
Sbjct: 221 PELIELDKLLVQLGI----------------TLENLIDIGILLGTDYNPDGFEGIGPKKA 264
Query: 256 IELIKEHRSIEKI 268
++L+K + IEKI
Sbjct: 265 LQLVKAYGGIEKI 277
>gi|193084162|gb|ACF09827.1| XPG I flap structure-specific endonuclease [uncultured marine
crenarchaeote AD1000-207-H3]
Length = 341
Score = 97.4 bits (241), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 62/182 (34%), Positives = 94/182 (51%), Gaps = 27/182 (14%)
Query: 60 KAPCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLE--- 116
+A + EA A M K GK YA A++D D++ FG+ L+R+ T S RKLP + +++
Sbjct: 148 QAKADGEATAAHMNKTGKAYAVASQDYDSILFGATKLVRNFTNSGRRKLPNRNTYIDIEP 207
Query: 117 ------KVLEGMELSHEEFIDLCILLGCDYC-DSIRGIGPKRAIELIKEHRSIEKI---- 165
K L+ + ++ E+ ID+ IL+G D+ D IGPK A+++IKEH +E I
Sbjct: 208 EIINYQKSLDALGITGEQIIDIGILVGTDFNPDGFERIGPKTALKMIKEHGKLEDIPKIQ 267
Query: 166 --LENIDTKKYTVPEGWLYKEARELFRHPEVADPETIEFIDLCILLGCDYCDSIRGIGPK 223
LE ID YK+ R++F P++ D IEF D DY + R +
Sbjct: 268 EQLEQID-----------YKQIRKIFLQPDMPDIGKIEFKDTDYSGVVDYLANERSFSQE 316
Query: 224 RA 225
R
Sbjct: 317 RV 318
Score = 78.6 bits (192), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 39/92 (42%), Positives = 55/92 (59%), Gaps = 1/92 (1%)
Query: 317 SRKICIDASMSLYQFLIAVRS-EGNQLMSVDGEPTSHLMGTFYRTIRLVEHGLKPIYVFD 375
S+ I IDA ++YQFL +R EG L G TSHL G +R I + G+KP+YVFD
Sbjct: 21 SKIIAIDAYNAIYQFLTIIRGPEGLHLTDSRGMVTSHLTGLLHRNINFLSMGIKPVYVFD 80
Query: 376 GKPPTLKSGELNKRMEKREDAQKALAKAQEQG 407
G+PP+LK+ E+ +R + +A KA+ G
Sbjct: 81 GRPPSLKTAEIQRRKLGKIEATIKYEKAKASG 112
Score = 48.1 bits (113), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 30/81 (37%), Positives = 42/81 (51%), Gaps = 18/81 (22%)
Query: 232 FIDLCILLGCDYC-DSIRGIGPKRAIELIKEHRSIEKI------LENIDTKKYTVPEGWL 284
ID+ IL+G D+ D IGPK A+++IKEH +E I LE ID
Sbjct: 226 IIDIGILVGTDFNPDGFERIGPKTALKMIKEHGKLEDIPKIQEQLEQID----------- 274
Query: 285 YKEARELFRHPEIADPETIEL 305
YK+ R++F P++ D IE
Sbjct: 275 YKQIRKIFLQPDMPDIGKIEF 295
>gi|389852752|ref|YP_006354986.1| flap endonuclease-1 [Pyrococcus sp. ST04]
gi|388250058|gb|AFK22911.1| flap endonuclease-1 [Pyrococcus sp. ST04]
Length = 341
Score = 97.4 bits (241), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 54/148 (36%), Positives = 85/148 (57%), Gaps = 20/148 (13%)
Query: 60 KAPCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLE--- 116
+AP E EAQ A M GKVYA+A++D D+L FG+ L+R++T + RKLP + ++E
Sbjct: 148 QAPSEGEAQAAYMASKGKVYASASQDYDSLLFGAPRLVRNLTITGKRKLPGKNIYVEIKP 207
Query: 117 ------KVLEGMELSHEEFIDLCILLGCDYC-DSIRGIGPKRAIELIKEHR-SIEKILEN 168
+VL ++L+ E+ I+L IL+G DY I+GIGPK+A+E+++ + + K
Sbjct: 208 ELIVLDEVLSSLKLTREKLIELAILVGTDYNPGGIKGIGPKKALEIVRHSKDPLAKFQRQ 267
Query: 169 IDTKKYTVPEGWLYKEARELFRHPEVAD 196
D Y + +E F +P V D
Sbjct: 268 SDVDLYAI---------KEFFLNPPVTD 286
Score = 95.1 bits (235), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 50/92 (54%), Positives = 60/92 (65%), Gaps = 5/92 (5%)
Query: 317 SRKICIDASMSLYQFLIAVRS-EGNQLMSVDGEPTSHLMGTFYRTIRLVEHGLKPIYVFD 375
RK+ IDA ++YQFL +R +G LM G TSHL G FYRTI L+E G+KP YVFD
Sbjct: 21 GRKVAIDALNAIYQFLSTIRQRDGTPLMDSKGRITSHLSGLFYRTINLMEAGIKPAYVFD 80
Query: 376 GKPPTLKSGELNKRMEKREDAQ----KALAKA 403
GKPP K EL KR E RE+A+ +ALAK
Sbjct: 81 GKPPEFKKRELEKRKEAREEAEIKWKEALAKG 112
Score = 56.2 bits (134), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 39/53 (73%)
Query: 408 KLKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSTTTQGRLDSFFTIR 460
KL+W +PDE+G++++LC + +F+E+R++NG ++L KA Q L+S+F R
Sbjct: 289 KLQWREPDEEGILRFLCDEHDFSEERVKNGLERLKKAVKAGKQSTLESWFMKR 341
Score = 55.1 bits (131), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 39/52 (75%)
Query: 3 LKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSSTTQGRLDSFFTIR 54
L+W +PDE+G++++LC + +F+E+R++NG ++L KA + Q L+S+F R
Sbjct: 290 LQWREPDEEGILRFLCDEHDFSEERVKNGLERLKKAVKAGKQSTLESWFMKR 341
>gi|156082429|ref|XP_001608699.1| XPG N-terminal domain and XPG I-region domain containing protein
[Babesia bovis T2Bo]
gi|317374876|sp|A7AX58.1|FEN1_BABBO RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|154795948|gb|EDO05131.1| XPG N-terminal domain and XPG I-region domain containing protein
[Babesia bovis]
Length = 672
Score = 97.1 bits (240), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 63/134 (47%), Positives = 85/134 (63%), Gaps = 9/134 (6%)
Query: 68 QCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVLEGMELSHE 127
QCA + + G V A +ED DAL F +LL+++T S PV L K LE +EL+HE
Sbjct: 164 QCAYLCQRGFVTAVGSEDADALVFRCGVLLKNLTASNK---PVVRVDLAKALELLELTHE 220
Query: 128 EFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGWLYKEARE 187
+F D CIL GCDYC +++G+GPK A LIK+H SI +ILE + T+ EG Y+ A+E
Sbjct: 221 QFTDFCILCGCDYCGTLKGVGPKTAYNLIKKHGSISRILE---VRSETL-EG--YEAAQE 274
Query: 188 LFRHPEVADPETIE 201
FR P+V D TI+
Sbjct: 275 YFRDPKVRDITTID 288
Score = 90.1 bits (222), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 69/182 (37%), Positives = 94/182 (51%), Gaps = 28/182 (15%)
Query: 303 IELVADVAPSSIRE-------SRKICIDASMSLYQFLIAVRSEGNQLMSVD---GEPTSH 352
I ++D AP I E I IDAS +LYQF IA+R EG+ L S+ GE TSH
Sbjct: 7 IGFLSDAAPGCISEVTLESLSGTSIAIDASTALYQFTIAIR-EGSYLSSLTNSKGESTSH 65
Query: 353 LMGTFYRTIRLVEHGLKPIYVFDGKPPTLKSGELNKRMEKREDAQKALAKAQEQGKLKWS 412
+ G R IRL+E G++P++VFD PP KS L KR RE+A+ +L KA E+
Sbjct: 66 IAGLLNRCIRLLELGIRPVFVFDSTPPEAKSQTLAKRKLLREEAESSLEKAIEED----- 120
Query: 413 DPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSTTTQGRLDSFFTIRREEKRKSRCQYQ 472
D++ + KY+ G + AKKLL RL I E+ +++C Y
Sbjct: 121 --DKEAIRKYV-GRTVRITQKENESAKKLL---------RLVGVPVIEAAEEAEAQCAYL 168
Query: 473 CQ 474
CQ
Sbjct: 169 CQ 170
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 36/73 (49%), Positives = 49/73 (67%), Gaps = 6/73 (8%)
Query: 232 FIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGWLYKEAREL 291
F D CIL GCDYC +++G+GPK A LIK+H SI +ILE + T+ EG Y+ A+E
Sbjct: 222 FTDFCILCGCDYCGTLKGVGPKTAYNLIKKHGSISRILE---VRSETL-EG--YEAAQEY 275
Query: 292 FRHPEIADPETIE 304
FR P++ D TI+
Sbjct: 276 FRDPKVRDITTID 288
>gi|82617225|emb|CAI64131.1| DNA repair protein [uncultured archaeon]
gi|268322957|emb|CBH36545.1| flap structure-specific endonuclease [uncultured archaeon]
Length = 330
Score = 97.1 bits (240), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 52/137 (37%), Positives = 83/137 (60%), Gaps = 3/137 (2%)
Query: 60 KAPCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVL 119
+AP E EAQ A MV+ G +++D D+L FG+ I +R+++ + +K ++ L+ +
Sbjct: 147 QAPSEGEAQAAYMVQNGDAELVSSQDYDSLLFGAPITIRNLS-APRKKAKLELVELKALE 205
Query: 120 EGMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEG 179
+ + EE ID+ IL+G D+ + I+G+G KRA++LIK+H SIEKI+ E
Sbjct: 206 DTQGIIREELIDIAILVGTDFNEGIKGVGVKRALKLIKKHHSIEKIISQAAIDTSAGIEN 265
Query: 180 WLYKEARELFRHPEVAD 196
Y+ RELF HP+V D
Sbjct: 266 --YELVRELFLHPDVTD 280
Score = 73.6 bits (179), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 37/80 (46%), Positives = 49/80 (61%), Gaps = 1/80 (1%)
Query: 320 ICIDASMSLYQFLIAVRS-EGNQLMSVDGEPTSHLMGTFYRTIRLVEHGLKPIYVFDGKP 378
+ +DA +LYQFL +R +G L G TSHL G YRT L+E GLK ++VFDGKP
Sbjct: 24 VAVDAYNTLYQFLSIIRQPDGTPLRDSSGRITSHLSGLIYRTTNLMEAGLKLVFVFDGKP 83
Query: 379 PTLKSGELNKRMEKREDAQK 398
LK+ + R E+RE A +
Sbjct: 84 SELKADVIKARSERREAAMQ 103
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/68 (44%), Positives = 43/68 (63%), Gaps = 2/68 (2%)
Query: 232 FIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGWLYKEAREL 291
ID+ IL+G D+ + I+G+G KRA++LIK+H SIEKI+ E Y+ REL
Sbjct: 215 LIDIAILVGTDFNEGIKGVGVKRALKLIKKHHSIEKIISQAAIDTSAGIEN--YELVREL 272
Query: 292 FRHPEIAD 299
F HP++ D
Sbjct: 273 FLHPDVTD 280
>gi|347522663|ref|YP_004780233.1| flap structure-specific endonuclease [Pyrolobus fumarii 1A]
gi|343459545|gb|AEM37981.1| flap structure-specific endonuclease [Pyrolobus fumarii 1A]
Length = 350
Score = 97.1 bits (240), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 54/154 (35%), Positives = 90/154 (58%), Gaps = 16/154 (10%)
Query: 60 KAPCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLE--- 116
+AP + EAQ A M + G V+A A++D DAL FG+ L+R++T + RKLP ++ ++E
Sbjct: 151 QAPADGEAQAAYMARKGDVWAAASQDYDALLFGAPRLVRNLTITGRRKLPKKDVYVEIKP 210
Query: 117 ------KVLEGMELSHEEFIDLCILLGCDY-CDSIRGIGPKRAIELIKEHRSIEKILENI 169
K+L+ + ++ E+ I + IL+G DY D +RGIGPK A+ ++K + K+L ++
Sbjct: 211 ELIELDKLLKALGITREQLIVIGILVGTDYNPDGVRGIGPKTALRMVKAQPDVRKLLRSL 270
Query: 170 DTKKY-TVPEGWLYKEARELFRHPEVADPETIEF 202
++ T PE E F +P V D +E+
Sbjct: 271 PRNEFPTEPEKIF-----EYFLNPPVTDEYKLEW 299
Score = 94.7 bits (234), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 54/129 (41%), Positives = 76/129 (58%), Gaps = 9/129 (6%)
Query: 317 SRKICIDASMSLYQFLIAVR-SEGNQLMSVDGEPTSHLMGTFYRTIRLVEHGLKPIYVFD 375
+ + IDA +LYQFL A+R +G LM G TSHL G FYRTI L+EHG+K +YVFD
Sbjct: 24 GKAVAIDAYNALYQFLAAIRQPDGTPLMDSRGRITSHLSGLFYRTINLIEHGIKVVYVFD 83
Query: 376 GKPPTLKSGELNKRMEKREDAQKALAKAQEQGKLKWSDPDEDGLVKYLCGDKNFAEDRIR 435
GKPP +KS E+ +R + + +A K +A ++G D + +Y ED ++
Sbjct: 84 GKPPEIKSIEIERRKKVKSEAAKKYEEAIKKG-------DLEAARRYAQMASRLTEDMVK 136
Query: 436 NGAKKLLKA 444
AK+LL A
Sbjct: 137 E-AKRLLDA 144
Score = 42.7 bits (99), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 38/70 (54%), Gaps = 7/70 (10%)
Query: 232 FIDLCILLGCDYC-DSIRGIGPKRAIELIKEHRSIEKILENIDTKKY-TVPEGWLYKEAR 289
I + IL+G DY D +RGIGPK A+ ++K + K+L ++ ++ T PE
Sbjct: 229 LIVIGILVGTDYNPDGVRGIGPKTALRMVKAQPDVRKLLRSLPRNEFPTEPEKIF----- 283
Query: 290 ELFRHPEIAD 299
E F +P + D
Sbjct: 284 EYFLNPPVTD 293
>gi|15920393|ref|NP_376062.1| flap endonuclease-1 [Sulfolobus tokodaii str. 7]
Length = 304
Score = 97.1 bits (240), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 57/156 (36%), Positives = 93/156 (59%), Gaps = 13/156 (8%)
Query: 60 KAPCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLE--- 116
+AP E EA+ A + G +ATA++D D+L FG+ L+R++T S RKLP ++ ++E
Sbjct: 103 QAPSEGEAEAAYINILGLSWATASQDYDSLLFGAKRLIRNLTLSGKRKLPGKDVYVEIKP 162
Query: 117 ------KVLEGMELSHEEFIDLCILLGCDYC-DSIRGIGPKRAIELIKEHRSIEKILENI 169
+L+ + L+ E+ ID+ I++G DY D I+G G K A +IK++ S+EK +E
Sbjct: 163 ELIELDTLLKKLGLTREQLIDIGIIVGTDYNPDGIKGYGVKTAYRIIKKYGSLEKAIEKG 222
Query: 170 DTKKYTVPEGWLYKEARELFRHPEVADP-ETIEFID 204
+ K V + +E R LF P+V +P E +E +D
Sbjct: 223 EIPKIKV--NFNVEEIRSLFLKPQVVEPKENLELVD 256
Score = 66.6 bits (161), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 36/71 (50%), Positives = 50/71 (70%)
Query: 343 MSVDGEPTSHLMGTFYRTIRLVEHGLKPIYVFDGKPPTLKSGELNKRMEKREDAQKALAK 402
M G TSHL G FYRTI ++E G+ PIYVFDGKPP K+ EL +R + +E+A+K L +
Sbjct: 1 MDSQGRVTSHLNGLFYRTISILEEGIIPIYVFDGKPPEQKAQELERRKKVKEEAEKKLEQ 60
Query: 403 AQEQGKLKWSD 413
A+ +G +K S+
Sbjct: 61 AKTEGSIKTSE 71
Score = 49.7 bits (117), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 30/77 (38%), Positives = 46/77 (59%), Gaps = 4/77 (5%)
Query: 232 FIDLCILLGCDYC-DSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGWLYKEARE 290
ID+ I++G DY D I+G G K A +IK++ S+EK +E + K V + +E R
Sbjct: 181 LIDIGIIVGTDYNPDGIKGYGVKTAYRIIKKYGSLEKAIEKGEIPKIKV--NFNVEEIRS 238
Query: 291 LFRHPEIADP-ETIELV 306
LF P++ +P E +ELV
Sbjct: 239 LFLKPQVVEPKENLELV 255
>gi|297526096|ref|YP_003668120.1| flap structure-specific endonuclease [Staphylothermus hellenicus
DSM 12710]
gi|297255012|gb|ADI31221.1| flap structure-specific endonuclease [Staphylothermus hellenicus
DSM 12710]
Length = 350
Score = 97.1 bits (240), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 55/129 (42%), Positives = 75/129 (58%), Gaps = 9/129 (6%)
Query: 317 SRKICIDASMSLYQFLIAVR-SEGNQLMSVDGEPTSHLMGTFYRTIRLVEHGLKPIYVFD 375
R + ID +LYQFL A+R +G LM G TSHL G FYRTI ++E+G+KP YVFD
Sbjct: 25 GRIVVIDGYNALYQFLTAIRQPDGTPLMDSQGRITSHLSGLFYRTINILENGIKPAYVFD 84
Query: 376 GKPPTLKSGELNKRMEKREDAQKALAKAQEQGKLKWSDPDEDGLVKYLCGDKNFAEDRIR 435
GKPP +K+ E+ KR + REDA K +A +G D + +Y ++ +
Sbjct: 85 GKPPEIKAREIEKRRKIREDASKKYEEALRRG-------DVEAARRYAMMSAKLTDEMVH 137
Query: 436 NGAKKLLKA 444
+ AKKLL A
Sbjct: 138 D-AKKLLDA 145
Score = 96.3 bits (238), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 55/154 (35%), Positives = 94/154 (61%), Gaps = 16/154 (10%)
Query: 60 KAPCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLE--- 116
+A E EAQ A +V G +A+A++D D+L FGS L+R++T S RKLP + ++E
Sbjct: 152 QAVAEGEAQAAYIVGKGDAWASASQDYDSLLFGSPRLIRNLTISGRRKLPRKNVYIEIKP 211
Query: 117 ------KVLEGMELSHEEFIDLCILLGCDYC-DSIRGIGPKRAIELIKEHRSIEKILENI 169
K+LE + ++ E+ I + +L+G DY D ++GIGPK+A++L+K +++++KIL+ I
Sbjct: 212 EIIELKKLLEKLGITREQLIYVALLIGTDYNPDGVKGIGPKKALQLVKAYKTLDKILKAI 271
Query: 170 DTKKYTV-PEGWLYKEARELFRHPEVADPETIEF 202
++ V PE + E F +P V +E+
Sbjct: 272 PKTEFPVEPEKIV-----EYFLNPPVTTDYKLEW 300
Score = 46.6 bits (109), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 38/52 (73%), Gaps = 2/52 (3%)
Query: 232 FIDLCILLGCDYC-DSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTV-PE 281
I + +L+G DY D ++GIGPK+A++L+K +++++KIL+ I ++ V PE
Sbjct: 230 LIYVALLIGTDYNPDGVKGIGPKKALQLVKAYKTLDKILKAIPKTEFPVEPE 281
>gi|14520948|ref|NP_126423.1| flap endonuclease-1 [Pyrococcus abyssi GE5]
gi|28380024|sp|Q9V0P9.1|FEN_PYRAB RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|5458165|emb|CAB49654.1| fen1 FLAP endonuclease-1 [Pyrococcus abyssi GE5]
gi|380741502|tpe|CCE70136.1| TPA: flap endonuclease-1 [Pyrococcus abyssi GE5]
Length = 343
Score = 96.7 bits (239), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 50/92 (54%), Positives = 61/92 (66%), Gaps = 5/92 (5%)
Query: 317 SRKICIDASMSLYQFLIAVRS-EGNQLMSVDGEPTSHLMGTFYRTIRLVEHGLKPIYVFD 375
+KI IDA ++YQFL +R +G LM G TSHL G FYRTI L+E G+KP+YVFD
Sbjct: 21 GKKIAIDALNAIYQFLSTIRQRDGTPLMDSKGRITSHLSGLFYRTINLMEAGIKPVYVFD 80
Query: 376 GKPPTLKSGELNKRMEKREDAQ----KALAKA 403
GKPP K EL KR E RE+A+ +ALAK
Sbjct: 81 GKPPAFKKKELEKRREAREEAEIKWKEALAKG 112
Score = 92.8 bits (229), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 52/148 (35%), Positives = 85/148 (57%), Gaps = 20/148 (13%)
Query: 60 KAPCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFH----- 114
+AP E EAQ A M G VYA+A++D D+L FG+ L+R++T + RK+P ++ +
Sbjct: 148 QAPSEGEAQAAYMAGKGDVYASASQDYDSLLFGTPRLVRNLTITGKRKMPGKDIYVEIKP 207
Query: 115 ----LEKVLEGMELSHEEFIDLCILLGCDYC-DSIRGIGPKRAIELIKEHR-SIEKILEN 168
LE+VL+ ++++ E+ I+L IL+G DY I+GIGPK+A+E++K + + K
Sbjct: 208 ELIVLEEVLKELKITREKLIELAILVGTDYNPGGIKGIGPKKALEIVKYSKDPLAKFQRQ 267
Query: 169 IDTKKYTVPEGWLYKEARELFRHPEVAD 196
D Y + +E F +P D
Sbjct: 268 SDVDLYAI---------KEFFLNPPTTD 286
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 41/54 (75%)
Query: 2 TLKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSSTTQGRLDSFFTIRR 55
+LKW +PDE+G++++LC + +F+E+R++NG ++L KA + Q L+S+F ++
Sbjct: 289 SLKWKEPDEEGIIRFLCDEHDFSEERVKNGLERLKKAIKAGKQSTLESWFIKKK 342
Score = 56.2 bits (134), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 39/53 (73%)
Query: 409 LKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSTTTQGRLDSFFTIRR 461
LKW +PDE+G++++LC + +F+E+R++NG ++L KA Q L+S+F ++
Sbjct: 290 LKWKEPDEEGIIRFLCDEHDFSEERVKNGLERLKKAIKAGKQSTLESWFIKKK 342
>gi|336122204|ref|YP_004576979.1| Flap structure-specific endonuclease [Methanothermococcus
okinawensis IH1]
gi|334856725|gb|AEH07201.1| Flap structure-specific endonuclease [Methanothermococcus
okinawensis IH1]
Length = 324
Score = 96.7 bits (239), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 49/137 (35%), Positives = 83/137 (60%), Gaps = 15/137 (10%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVLE 120
AP E EAQC+ M K G VYA ++D DAL +G+ +R++T S P++ L++VL
Sbjct: 149 APSEGEAQCSYMAKKGDVYAVVSQDYDALLYGAPRTVRNITASNK---PLELIELDEVLG 205
Query: 121 GMELSHEEFIDLCILLGCDY-CDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEG 179
+ ++ + ID+ IL+G DY ++GIGPK+A++++K ++ E I +NI+
Sbjct: 206 ALNITLDNLIDMAILIGTDYNIGGVKGIGPKKALDIVKNNKMGEYI-KNIEN-------- 256
Query: 180 WLYKEARELFRHPEVAD 196
Y+ + +F+HP+V D
Sbjct: 257 --YEVIKNIFKHPKVTD 271
Score = 72.8 bits (177), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 46/128 (35%), Positives = 74/128 (57%), Gaps = 9/128 (7%)
Query: 316 ESRKICIDASMSLYQFLIAVR-SEGNQLMSVDGEPTSHLMGTFYRTIRLVEHGLKPIYVF 374
+++ + ID+ LYQFL ++R +G+ L + GE TS G FY+ I ++E+ + PI+VF
Sbjct: 20 KNKTVAIDSMNILYQFLSSIRLRDGSPLRNSKGEITSTYNGIFYKNIYMLENDITPIWVF 79
Query: 375 DGKPPTLKSGELNKRMEKREDAQKALAKAQEQGKLKWSDPDEDGLVKYLCGDKNFAEDRI 434
DGKPP LK +R + +E A + A+E+G L ED + KY N+ E ++
Sbjct: 80 DGKPPELKHKTREERKKVKEKAMEEYISAKEEGNL------ED-MQKY-AKRINYLEPKV 131
Query: 435 RNGAKKLL 442
+K+LL
Sbjct: 132 VENSKRLL 139
Score = 55.5 bits (132), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 56/96 (58%), Gaps = 16/96 (16%)
Query: 229 LYSFIDLCILLGCDY-CDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGWLYKE 287
L + ID+ IL+G DY ++GIGPK+A++++K ++ E I +NI+ Y+
Sbjct: 211 LDNLIDMAILIGTDYNIGGVKGIGPKKALDIVKNNKMGEYI-KNIEN----------YEV 259
Query: 288 ARELFRHPEIADPETIELVADVAPSSIRESRKICID 323
+ +F+HP++ D +++L A +I E RK ID
Sbjct: 260 IKNIFKHPKVTDEYSLKLGA----PNIEELRKFLID 291
>gi|359417810|ref|ZP_09209878.1| flap endonuclease-1, partial [Candidatus Haloredivivus sp. G17]
gi|358031834|gb|EHK00670.1| flap endonuclease-1 [Candidatus Haloredivivus sp. G17]
Length = 296
Score = 96.7 bits (239), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 45/117 (38%), Positives = 74/117 (63%), Gaps = 8/117 (6%)
Query: 60 KAPCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARK--------LPVQ 111
+A E EAQ A M G VYA ++D D + FG++ ++R++T + RK + Q
Sbjct: 105 QASSEGEAQAAFMSSEGDVYAVGSQDWDCMLFGADRMVRNLTSRKTRKTSSGKRKEVKQQ 164
Query: 112 EFHLEKVLEGMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILEN 168
LEKVLE ++LS E+ + L +++G D+ D I GIGPK+ +E++K+H S+E ++E+
Sbjct: 165 RIELEKVLEELDLSREQLVMLGMVMGTDFNDGIHGIGPKKGLEMVKDHESLESLMED 221
Score = 56.2 bits (134), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 25/47 (53%), Positives = 30/47 (63%)
Query: 339 GNQLMSVDGEPTSHLMGTFYRTIRLVEHGLKPIYVFDGKPPTLKSGE 385
G L DG+ TSHL G FYR I L+E ++P+YVFDG P LK E
Sbjct: 1 GTPLKDSDGDITSHLSGLFYRNINLLEKDIRPVYVFDGAIPDLKQKE 47
Score = 49.3 bits (116), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 29/37 (78%)
Query: 235 LCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILEN 271
L +++G D+ D I GIGPK+ +E++K+H S+E ++E+
Sbjct: 185 LGMVMGTDFNDGIHGIGPKKGLEMVKDHESLESLMED 221
>gi|385805407|ref|YP_005841805.1| flap endonuclease-1 [Fervidicoccus fontis Kam940]
gi|383795270|gb|AFH42353.1| flap endonuclease-1 [Fervidicoccus fontis Kam940]
Length = 350
Score = 96.7 bits (239), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 53/108 (49%), Positives = 69/108 (63%), Gaps = 10/108 (9%)
Query: 309 VAPSSIRE-------SRKICIDASMSLYQFLIAVR-SEGNQLMSVDGEPTSHLMGTFYRT 360
+ P +I+E R I IDA +LYQFL A+R +G L+ G TSHL G FYRT
Sbjct: 12 IPPEAIKEIELESLKGRTIAIDAYNALYQFLAAIRQPDGTPLIDNKGRVTSHLSGIFYRT 71
Query: 361 IRLVEHGLKPIYVFDGKPPTLKSGELNKRMEKREDAQKA--LAKAQEQ 406
I L+E G+KPIYVFDG PP+LK EL KR + +E+A K +A A+E+
Sbjct: 72 INLIEAGIKPIYVFDGLPPSLKEKELEKRRKVKEEAAKKYQVAIAEEK 119
Score = 90.1 bits (222), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 50/153 (32%), Positives = 89/153 (58%), Gaps = 16/153 (10%)
Query: 60 KAPCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLE--- 116
+AP E EAQ A M K G V+++ ++D D++ FGS ++R++T S RKLP ++ +++
Sbjct: 154 QAPAEGEAQAAYMAKKGDVWSSGSQDYDSILFGSPRVVRNLTVSGKRKLPKKDVYIDIKP 213
Query: 117 ------KVLEGMELSHEEFIDLCILLGCDYC-DSIRGIGPKRAIELIKEHRSIEKILENI 169
+ E + ++ E+ I + I+LG DY D I+G+G K A++++K + E+IL+++
Sbjct: 214 EVIESNVIYEKLGINREKLIIIGIMLGTDYNPDGIKGVGIKTALKIVKSYEKTEEILKSL 273
Query: 170 DTKKYTVPEGWLYKEARELFRHPEVADPETIEF 202
+ Y E F +PEV D TI++
Sbjct: 274 PQTQVD------YYEIFNYFMNPEVTDNYTIQW 300
>gi|28380019|sp|Q976H6.2|FEN_SULTO RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|342306106|dbj|BAK54195.1| flap endonuclease-1 [Sulfolobus tokodaii str. 7]
Length = 351
Score = 96.7 bits (239), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 57/156 (36%), Positives = 93/156 (59%), Gaps = 13/156 (8%)
Query: 60 KAPCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLE--- 116
+AP E EA+ A + G +ATA++D D+L FG+ L+R++T S RKLP ++ ++E
Sbjct: 150 QAPSEGEAEAAYINILGLSWATASQDYDSLLFGAKRLIRNLTLSGKRKLPGKDVYVEIKP 209
Query: 117 ------KVLEGMELSHEEFIDLCILLGCDYC-DSIRGIGPKRAIELIKEHRSIEKILENI 169
+L+ + L+ E+ ID+ I++G DY D I+G G K A +IK++ S+EK +E
Sbjct: 210 ELIELDTLLKKLGLTREQLIDIGIIVGTDYNPDGIKGYGVKTAYRIIKKYGSLEKAIEKG 269
Query: 170 DTKKYTVPEGWLYKEARELFRHPEVADP-ETIEFID 204
+ K V + +E R LF P+V +P E +E +D
Sbjct: 270 EIPKIKV--NFNVEEIRSLFLKPQVVEPKENLELVD 303
Score = 90.1 bits (222), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 50/98 (51%), Positives = 68/98 (69%), Gaps = 1/98 (1%)
Query: 317 SRKICIDASMSLYQFLIAVR-SEGNQLMSVDGEPTSHLMGTFYRTIRLVEHGLKPIYVFD 375
+KI IDA +LYQFL A+R +G LM G TSHL G FYRTI ++E G+ PIYVFD
Sbjct: 21 GKKISIDAYNALYQFLAAIRQPDGTPLMDSQGRVTSHLNGLFYRTISILEEGIIPIYVFD 80
Query: 376 GKPPTLKSGELNKRMEKREDAQKALAKAQEQGKLKWSD 413
GKPP K+ EL +R + +E+A+K L +A+ +G +K S+
Sbjct: 81 GKPPEQKAQELERRKKVKEEAEKKLEQAKTEGSIKTSE 118
Score = 49.7 bits (117), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 30/77 (38%), Positives = 46/77 (59%), Gaps = 4/77 (5%)
Query: 232 FIDLCILLGCDYC-DSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGWLYKEARE 290
ID+ I++G DY D I+G G K A +IK++ S+EK +E + K V + +E R
Sbjct: 228 LIDIGIIVGTDYNPDGIKGYGVKTAYRIIKKYGSLEKAIEKGEIPKIKV--NFNVEEIRS 285
Query: 291 LFRHPEIADP-ETIELV 306
LF P++ +P E +ELV
Sbjct: 286 LFLKPQVVEPKENLELV 302
>gi|24987745|pdb|1MC8|A Chain A, Crystal Structure Of Flap Endonuclease-1 R42e Mutant From
Pyrococcus Horikoshii
gi|24987746|pdb|1MC8|B Chain B, Crystal Structure Of Flap Endonuclease-1 R42e Mutant From
Pyrococcus Horikoshii
Length = 343
Score = 96.7 bits (239), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 50/94 (53%), Positives = 60/94 (63%), Gaps = 1/94 (1%)
Query: 317 SRKICIDASMSLYQFLIAVRSE-GNQLMSVDGEPTSHLMGTFYRTIRLVEHGLKPIYVFD 375
+KI IDA ++YQFL +R E G LM G TSHL G FYRTI L+E G+KP YVFD
Sbjct: 21 GKKIAIDALNAIYQFLSTIRQEDGTPLMDSKGRITSHLSGLFYRTINLMEAGIKPAYVFD 80
Query: 376 GKPPTLKSGELNKRMEKREDAQKALAKAQEQGKL 409
GKPP K EL KR E RE+A+ +A +G L
Sbjct: 81 GKPPEFKRKELEKRREAREEAELKWKEALAKGNL 114
Score = 91.7 bits (226), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 50/148 (33%), Positives = 86/148 (58%), Gaps = 20/148 (13%)
Query: 60 KAPCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLE--- 116
+AP E EAQ A M G VYA+A++D D+L FG+ L+R++T + RK+P ++ ++E
Sbjct: 148 QAPSEGEAQAAYMASKGDVYASASQDYDSLLFGAPRLIRNLTITGKRKMPGKDVYVEIKP 207
Query: 117 ------KVLEGMELSHEEFIDLCILLGCDYC-DSIRGIGPKRAIELIKEHR-SIEKILEN 168
+VL+ ++++ E+ I+L IL+G DY ++GIGPK+A+E+++ R + K
Sbjct: 208 ELVVLDEVLKELKITREKLIELAILVGTDYNPGGVKGIGPKKALEIVRYSRDPLAKFQRQ 267
Query: 169 IDTKKYTVPEGWLYKEARELFRHPEVAD 196
D Y + +E F +P V +
Sbjct: 268 SDVDLYAI---------KEFFLNPPVTN 286
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 40/54 (74%)
Query: 2 TLKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSSTTQGRLDSFFTIRR 55
+L W +PDE+G++K+LC + NF+E+R++NG ++L KA + Q L+S+F ++
Sbjct: 289 SLSWKEPDEEGILKFLCDEHNFSEERVKNGIERLKKAIKAGRQSTLESWFVKKK 342
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 38/53 (71%)
Query: 409 LKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSTTTQGRLDSFFTIRR 461
L W +PDE+G++K+LC + NF+E+R++NG ++L KA Q L+S+F ++
Sbjct: 290 LSWKEPDEEGILKFLCDEHNFSEERVKNGIERLKKAIKAGRQSTLESWFVKKK 342
>gi|390961742|ref|YP_006425576.1| flap endonuclease-1 [Thermococcus sp. CL1]
gi|390520050|gb|AFL95782.1| flap endonuclease-1 [Thermococcus sp. CL1]
Length = 341
Score = 96.7 bits (239), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 59/127 (46%), Positives = 73/127 (57%), Gaps = 9/127 (7%)
Query: 317 SRKICIDASMSLYQFLIAVRS-EGNQLMSVDGEPTSHLMGTFYRTIRLVEHGLKPIYVFD 375
RK+ IDA ++YQFL +R +G LM G TSHL G FYRTI L+E G+KP YVFD
Sbjct: 21 GRKVAIDAFNAMYQFLSTIRQRDGTPLMDSRGRITSHLSGFFYRTINLMEAGIKPAYVFD 80
Query: 376 GKPPTLKSGELNKRMEKREDAQKALAKAQEQGKLKWSDPDEDGLVKYLCGDKNFAEDRIR 435
GKPP K E+ KR E RE A++ +A E+G L+ + KY E I
Sbjct: 81 GKPPEFKRKEIEKRREAREKAEERWHEALERGDLEEAK-------KYAMRATRVNEGLI- 132
Query: 436 NGAKKLL 442
N AKKLL
Sbjct: 133 NDAKKLL 139
Score = 88.6 bits (218), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 52/148 (35%), Positives = 84/148 (56%), Gaps = 20/148 (13%)
Query: 60 KAPCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFH----- 114
+AP E EAQ A M KVYA+A++D D+L FG+ L+R++T + RKLP + +
Sbjct: 148 QAPSEGEAQAAYMAAKKKVYASASQDYDSLLFGAPRLVRNLTITGRRKLPGKNAYVEVKP 207
Query: 115 ----LEKVLEGMELSHEEFIDLCILLGCDYC-DSIRGIGPKRAIELIKEHRS-IEKILEN 168
LE+VL+ + + E+ I++ IL+G DY I+GIGPK+A+ ++K + + K ++
Sbjct: 208 ELVVLEEVLKELGVDREKLIEMAILVGTDYNPGGIKGIGPKKALTIVKRTKDPLRKYQKD 267
Query: 169 IDTKKYTVPEGWLYKEARELFRHPEVAD 196
D Y + +E F +P V D
Sbjct: 268 SDVDLYAI---------KEFFLNPPVTD 286
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 39/52 (75%)
Query: 3 LKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSSTTQGRLDSFFTIR 54
LKW +PDE+G++++LC + +F+E+R++NG ++L KA + Q L+S+F R
Sbjct: 290 LKWREPDEEGIIRFLCDEHDFSEERVKNGIERLKKAVKAGKQATLESWFGKR 341
Score = 57.0 bits (136), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 38/52 (73%)
Query: 409 LKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSTTTQGRLDSFFTIR 460
LKW +PDE+G++++LC + +F+E+R++NG ++L KA Q L+S+F R
Sbjct: 290 LKWREPDEEGIIRFLCDEHDFSEERVKNGIERLKKAVKAGKQATLESWFGKR 341
>gi|429217578|ref|YP_007175568.1| flap structure-specific endonuclease [Caldisphaera lagunensis DSM
15908]
gi|429134107|gb|AFZ71119.1| flap structure-specific endonuclease [Caldisphaera lagunensis DSM
15908]
Length = 351
Score = 96.7 bits (239), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 58/166 (34%), Positives = 88/166 (53%), Gaps = 22/166 (13%)
Query: 60 KAPCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQE------- 112
+AP + EAQ A M K G VYAT ++D D+L FGS LLR++ + RKLP +E
Sbjct: 154 QAPADGEAQAAYMAKKGDVYATGSQDYDSLLFGSPKLLRNLAITGKRKLPNKEEYIEIKP 213
Query: 113 --FHLEKVLEGMELSHEEFIDLCILLGCDYC-DSIRGIGPKRAIELIKEHRSIEKILENI 169
+L +L+ +E++ E+ I + ILLG D+ D +G GPK A++ +KEHR K L ++
Sbjct: 214 ELINLNDMLKALEITREQLIVIGILLGTDFNPDGFKGYGPKTALKYVKEHRDPIKALSSL 273
Query: 170 DTKKYTVPEGWLYKEARELFRHP--------EVADPETIEFIDLCI 207
+ +Y E F +P E DP + ID+ +
Sbjct: 274 KVNDEDIDIMKIY----EYFLNPPSNPNYKIEWRDPNEEKIIDMLV 315
Score = 91.3 bits (225), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 42/91 (46%), Positives = 60/91 (65%), Gaps = 1/91 (1%)
Query: 320 ICIDASMSLYQFLIAVR-SEGNQLMSVDGEPTSHLMGTFYRTIRLVEHGLKPIYVFDGKP 378
+ +D LYQFL A+R +G L+ G TSH+ G FYRTI L+E G+KPIYVFDGKP
Sbjct: 30 VALDGYNMLYQFLAAIRQPDGTPLIDSKGNITSHISGLFYRTINLIEEGVKPIYVFDGKP 89
Query: 379 PTLKSGELNKRMEKREDAQKALAKAQEQGKL 409
P +K E+ R+ +R+ + KA+++GK+
Sbjct: 90 PEMKKKEIEDRINRRQQYAEKYQKAKQEGKI 120
>gi|20094004|ref|NP_613851.1| flap endonuclease-1 [Methanopyrus kandleri AV19]
gi|28380017|sp|Q8TXU4.1|FEN_METKA RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|19886972|gb|AAM01781.1| 5'-3' exonuclease [Methanopyrus kandleri AV19]
Length = 348
Score = 96.3 bits (238), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 63/151 (41%), Positives = 88/151 (58%), Gaps = 17/151 (11%)
Query: 60 KAPCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLP---------V 110
+AP E EAQCA M + G V+AT ++D D+L FGS L+R++T RK P
Sbjct: 145 QAPSEGEAQCAYMARCGDVWATGSQDYDSLLFGSPRLVRNITIVGKRKHPHTGEIIEVKP 204
Query: 111 QEFHLEKVLEGMEL-SHEEFIDLCILLGCDYC-DSIRGIGPKRAIELIKEHRSIEKILEN 168
+ LE VL+ + L S E+ +DL ILLG DY D + GIGPKRA++LI+++ S++++
Sbjct: 205 EIMRLEDVLDQLGLESREQLVDLAILLGTDYNPDGVPGIGPKRALQLIRKYGSLDEL--- 261
Query: 169 IDTKKYTVPEGWLYKEA---RELFRHPEVAD 196
DT + E L E R LF PEV D
Sbjct: 262 KDTDIWPKIERHLPVEPEKLRRLFLEPEVTD 292
Score = 84.0 bits (206), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 42/87 (48%), Positives = 53/87 (60%), Gaps = 7/87 (8%)
Query: 296 EIADPETIELVADVAPSSIRESRKICIDASMSLYQFLIAVRSEGNQLMSVDGEPTSHLMG 355
E+ +PE +L A R+I IDA +LYQFL + +G LM G TSHL G
Sbjct: 8 ELIEPEETDLRALAG-------REIAIDAFNALYQFLTTIMKDGRPLMDSRGRITSHLNG 60
Query: 356 TFYRTIRLVEHGLKPIYVFDGKPPTLK 382
YRT+ LVE G+KP+YVFDG+PP LK
Sbjct: 61 LLYRTVNLVEEGIKPVYVFDGEPPDLK 87
Score = 49.3 bits (116), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 35/53 (66%), Gaps = 4/53 (7%)
Query: 3 LKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKA----RSSTTQGRLDSFF 51
L W +PDE+GLV++L +++F+EDR+R ++L +A R Q LD+FF
Sbjct: 296 LDWDEPDEEGLVEFLVEERDFSEDRVRRAVERLKEALQELRKGGRQETLDAFF 348
Score = 48.9 bits (115), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 36/54 (66%), Gaps = 4/54 (7%)
Query: 408 KLKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKA----RSTTTQGRLDSFF 457
+L W +PDE+GLV++L +++F+EDR+R ++L +A R Q LD+FF
Sbjct: 295 ELDWDEPDEEGLVEFLVEERDFSEDRVRRAVERLKEALQELRKGGRQETLDAFF 348
Score = 48.5 bits (114), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 30/72 (41%), Positives = 43/72 (59%), Gaps = 7/72 (9%)
Query: 232 FIDLCILLGCDYC-DSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGWLYKEA-- 288
+DL ILLG DY D + GIGPKRA++LI+++ S++++ DT + E L E
Sbjct: 224 LVDLAILLGTDYNPDGVPGIGPKRALQLIRKYGSLDEL---KDTDIWPKIERHLPVEPEK 280
Query: 289 -RELFRHPEIAD 299
R LF PE+ D
Sbjct: 281 LRRLFLEPEVTD 292
>gi|305662518|ref|YP_003858806.1| flap endonuclease 1 [Ignisphaera aggregans DSM 17230]
gi|304377087|gb|ADM26926.1| flap endonuclease 1 [Ignisphaera aggregans DSM 17230]
Length = 354
Score = 96.3 bits (238), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 57/129 (44%), Positives = 75/129 (58%), Gaps = 9/129 (6%)
Query: 317 SRKICIDASMSLYQFLIAVR-SEGNQLMSVDGEPTSHLMGTFYRTIRLVEHGLKPIYVFD 375
R I DA +LYQFL A+R ++G LM G TSHL G FYRTI +E+G+KPIYVFD
Sbjct: 25 GRIIAFDAYNALYQFLAAIRQTDGTPLMDSKGRITSHLSGLFYRTINFLENGIKPIYVFD 84
Query: 376 GKPPTLKSGELNKRMEKREDAQKALAKAQEQGKLKWSDPDEDGLVKYLCGDKNFAEDRIR 435
GKPP +K EL +R ++E A K KA +G ++ + KY+ F D +
Sbjct: 85 GKPPEIKRKELEQRRIRKERAAKMAEKAYSEGNIEEAS-------KYVV-QAIFLTDEMV 136
Query: 436 NGAKKLLKA 444
AK+LL A
Sbjct: 137 KEAKELLDA 145
Score = 91.3 bits (225), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 54/145 (37%), Positives = 85/145 (58%), Gaps = 22/145 (15%)
Query: 72 MVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFH---------LEKVLEGM 122
+ K G +ATA++D D+L FG+ L+R++T + RKLP ++ + LEK+L+ +
Sbjct: 164 IAKKGLAWATASQDYDSLLFGAPRLVRNLTITGKRKLPGKDIYIEIKPEIIELEKLLKTL 223
Query: 123 ELSHEEFIDLCILLGCDYC-DSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGWL 181
++HE+ ID+ IL+G DY D + GIGPK A +LIK + S+EKI+++ P G
Sbjct: 224 GITHEQLIDIAILIGTDYNPDGVEGIGPKTAYQLIKAYGSLEKIIKS--------PHGSH 275
Query: 182 YKE----ARELFRHPEVADPETIEF 202
E + F +P V D E IE+
Sbjct: 276 ISEDLIKIKNYFLNPVVVDVERIEW 300
Score = 47.8 bits (112), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 42/78 (53%), Gaps = 13/78 (16%)
Query: 232 FIDLCILLGCDYC-DSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGWLYKE--- 287
ID+ IL+G DY D + GIGPK A +LIK + S+EKI+++ P G E
Sbjct: 230 LIDIAILIGTDYNPDGVEGIGPKTAYQLIKAYGSLEKIIKS--------PHGSHISEDLI 281
Query: 288 -ARELFRHPEIADPETIE 304
+ F +P + D E IE
Sbjct: 282 KIKNYFLNPVVVDVERIE 299
>gi|126465621|ref|YP_001040730.1| flap endonuclease-1 [Staphylothermus marinus F1]
gi|166973707|sp|A3DMG2.1|FEN_STAMF RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|126014444|gb|ABN69822.1| flap endonuclease 1 [Staphylothermus marinus F1]
Length = 350
Score = 96.3 bits (238), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 54/126 (42%), Positives = 75/126 (59%), Gaps = 9/126 (7%)
Query: 320 ICIDASMSLYQFLIAVR-SEGNQLMSVDGEPTSHLMGTFYRTIRLVEHGLKPIYVFDGKP 378
+ ID +LYQFL A+R +G LM G TSHL G FYRTI ++E+G+KP YVFDGKP
Sbjct: 28 VVIDGYNALYQFLTAIRQPDGTPLMDSQGRITSHLSGLFYRTINILENGIKPAYVFDGKP 87
Query: 379 PTLKSGELNKRMEKREDAQKALAKAQEQGKLKWSDPDEDGLVKYLCGDKNFAEDRIRNGA 438
P +K+ E+ KR + REDA K +A +G D + +Y ++ +++ A
Sbjct: 88 PEIKAKEIEKRRKIREDASKKYEEALRKG-------DIEAARRYAMMSAKLTDEMVQD-A 139
Query: 439 KKLLKA 444
KKLL A
Sbjct: 140 KKLLDA 145
Score = 94.7 bits (234), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 57/154 (37%), Positives = 96/154 (62%), Gaps = 16/154 (10%)
Query: 60 KAPCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLE--- 116
+AP E EAQ A +V G +A+A++D D+L FGS L+R++T S RKLP + ++E
Sbjct: 152 QAPAEGEAQAAYIVSKGDAWASASQDYDSLLFGSPRLIRNLTISGKRKLPRKNVYIEIKP 211
Query: 117 ------KVLEGMELSHEEFIDLCILLGCDYC-DSIRGIGPKRAIELIKEHRSIEKILENI 169
K+LE + L+ E+ I + IL+G DY D ++GIGPK+A++L+K +++++KIL+ I
Sbjct: 212 EIIELKKLLEKLGLTREQLIYVAILIGTDYNPDGVKGIGPKKALQLVKAYKTLDKILKII 271
Query: 170 DTKKYTV-PEGWLYKEARELFRHPEVADPETIEF 202
++ + PE + E F +P V+ +E+
Sbjct: 272 PKTEFPIEPEKIV-----EYFLNPPVSTDYKLEW 300
Score = 47.0 bits (110), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 45/69 (65%), Gaps = 7/69 (10%)
Query: 232 FIDLCILLGCDYC-DSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTV-PEGWLYKEAR 289
I + IL+G DY D ++GIGPK+A++L+K +++++KIL+ I ++ + PE +
Sbjct: 230 LIYVAILIGTDYNPDGVKGIGPKKALQLVKAYKTLDKILKIIPKTEFPIEPEKIV----- 284
Query: 290 ELFRHPEIA 298
E F +P ++
Sbjct: 285 EYFLNPPVS 293
>gi|385773896|ref|YP_005646463.1| XPG I domain-containing protein [Sulfolobus islandicus HVE10/4]
gi|323478011|gb|ADX83249.1| XPG I domain protein [Sulfolobus islandicus HVE10/4]
Length = 302
Score = 95.9 bits (237), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 56/156 (35%), Positives = 94/156 (60%), Gaps = 14/156 (8%)
Query: 60 KAPCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHL---- 115
+AP E EA+ A + G +A A++D D++ FG+ L+R++T + RKLP ++ ++
Sbjct: 101 QAPSEGEAEAAYLNIIGFSWAAASQDYDSILFGAKRLVRNLTITGKRKLPNKDVYIDIKP 160
Query: 116 -----EKVLEGMELSHEEFIDLCILLGCDYC-DSIRGIGPKRAIELIKEHRSIEKILENI 169
E +L+ + ++ E+ ID+ IL+G DY D I+GIGP+RA+++IK++ IEK +E
Sbjct: 161 ELIETELLLKKLGITREQLIDISILIGTDYNPDGIKGIGPERALKIIKKYGKIEKAIEYG 220
Query: 170 DTKKYTVPEGWLYKEARELFRHPEVADPETIEFIDL 205
+ K + + E R LF P+V PE E +DL
Sbjct: 221 EISKRDIT--FNIDEIRSLFLKPQVVKPE--ETLDL 252
Score = 76.6 bits (187), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 35/67 (52%), Positives = 48/67 (71%)
Query: 343 MSVDGEPTSHLMGTFYRTIRLVEHGLKPIYVFDGKPPTLKSGELNKRMEKREDAQKALAK 402
M G TSHL G FYRTI ++E G+ PIYVFDGKPP KS EL +R + +E+A++ L +
Sbjct: 1 MDSHGRITSHLSGLFYRTINILEEGVIPIYVFDGKPPEQKSEELERRRKIKEEAERKLER 60
Query: 403 AQEQGKL 409
A+ +GK+
Sbjct: 61 AKSEGKI 67
Score = 54.3 bits (129), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/71 (40%), Positives = 44/71 (61%), Gaps = 3/71 (4%)
Query: 232 FIDLCILLGCDYC-DSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGWLYKEARE 290
ID+ IL+G DY D I+GIGP+RA+++IK++ IEK +E + K + + E R
Sbjct: 179 LIDISILIGTDYNPDGIKGIGPERALKIIKKYGKIEKAIEYGEISKRDIT--FNIDEIRS 236
Query: 291 LFRHPEIADPE 301
LF P++ PE
Sbjct: 237 LFLKPQVVKPE 247
Score = 43.1 bits (100), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 35/54 (64%), Gaps = 4/54 (7%)
Query: 2 TLKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLK----ARSSTTQGRLDSFF 51
TL ++P+E +V L + NF+E+R++NG ++L+K A+ ++ Q LD +F
Sbjct: 249 TLDLNEPNEKDIVNILVNEHNFSEERVKNGIERLIKAIREAKGASRQTGLDRWF 302
Score = 40.8 bits (94), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 33/53 (62%), Gaps = 4/53 (7%)
Query: 409 LKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLK----ARSTTTQGRLDSFF 457
L ++P+E +V L + NF+E+R++NG ++L+K A+ + Q LD +F
Sbjct: 250 LDLNEPNEKDIVNILVNEHNFSEERVKNGIERLIKAIREAKGASRQTGLDRWF 302
>gi|227828219|ref|YP_002829999.1| flap endonuclease-1 [Sulfolobus islandicus M.14.25]
gi|227460015|gb|ACP38701.1| XPG I domain protein [Sulfolobus islandicus M.14.25]
Length = 302
Score = 95.9 bits (237), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 56/156 (35%), Positives = 94/156 (60%), Gaps = 14/156 (8%)
Query: 60 KAPCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHL---- 115
+AP E EA+ A + G +A A++D D++ FG+ L+R++T + RKLP ++ ++
Sbjct: 101 QAPSEGEAEAAYLNILGFSWAAASQDYDSILFGAKRLVRNLTITGKRKLPNKDVYIDIKP 160
Query: 116 -----EKVLEGMELSHEEFIDLCILLGCDYC-DSIRGIGPKRAIELIKEHRSIEKILENI 169
E +L+ + ++ E+ ID+ IL+G DY D I+GIGP+RA+++IK++ IEK +E
Sbjct: 161 ELIETELLLKKLGITREQLIDISILIGTDYNPDGIKGIGPERALKIIKKYGKIEKAIEYG 220
Query: 170 DTKKYTVPEGWLYKEARELFRHPEVADPETIEFIDL 205
+ K + + E R LF P+V PE E +DL
Sbjct: 221 EISKRDIT--FNIDEIRSLFLKPQVVKPE--ETLDL 252
Score = 76.6 bits (187), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 35/67 (52%), Positives = 48/67 (71%)
Query: 343 MSVDGEPTSHLMGTFYRTIRLVEHGLKPIYVFDGKPPTLKSGELNKRMEKREDAQKALAK 402
M G TSHL G FYRTI ++E G+ PIYVFDGKPP KS EL +R + +E+A++ L +
Sbjct: 1 MDSHGRITSHLSGLFYRTINILEEGVIPIYVFDGKPPEQKSEELERRRKIKEEAERKLER 60
Query: 403 AQEQGKL 409
A+ +GK+
Sbjct: 61 AKSEGKI 67
Score = 54.3 bits (129), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/71 (40%), Positives = 44/71 (61%), Gaps = 3/71 (4%)
Query: 232 FIDLCILLGCDYC-DSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGWLYKEARE 290
ID+ IL+G DY D I+GIGP+RA+++IK++ IEK +E + K + + E R
Sbjct: 179 LIDISILIGTDYNPDGIKGIGPERALKIIKKYGKIEKAIEYGEISKRDIT--FNIDEIRS 236
Query: 291 LFRHPEIADPE 301
LF P++ PE
Sbjct: 237 LFLKPQVVKPE 247
Score = 41.6 bits (96), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 35/54 (64%), Gaps = 4/54 (7%)
Query: 2 TLKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLK----ARSSTTQGRLDSFF 51
TL ++P++ +V L + NF+E+R++NG ++L+K A+ ++ Q LD +F
Sbjct: 249 TLDLNEPNDKDIVNILVNEHNFSEERVKNGIERLIKAIREAKGASRQTGLDRWF 302
Score = 39.3 bits (90), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 33/53 (62%), Gaps = 4/53 (7%)
Query: 409 LKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLK----ARSTTTQGRLDSFF 457
L ++P++ +V L + NF+E+R++NG ++L+K A+ + Q LD +F
Sbjct: 250 LDLNEPNDKDIVNILVNEHNFSEERVKNGIERLIKAIREAKGASRQTGLDRWF 302
>gi|341583087|ref|YP_004763579.1| flap endonuclease-1 [Thermococcus sp. 4557]
gi|340810745|gb|AEK73902.1| flap endonuclease-1 [Thermococcus sp. 4557]
Length = 341
Score = 95.9 bits (237), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 48/94 (51%), Positives = 61/94 (64%), Gaps = 1/94 (1%)
Query: 317 SRKICIDASMSLYQFLIAVRS-EGNQLMSVDGEPTSHLMGTFYRTIRLVEHGLKPIYVFD 375
RK+ IDA ++YQFL +R +G LM G TSHL G FYR I L+E G+KP YVFD
Sbjct: 21 GRKVAIDAFNAIYQFLSTIRQRDGTPLMDSRGRITSHLSGLFYRNINLMEAGIKPAYVFD 80
Query: 376 GKPPTLKSGELNKRMEKREDAQKALAKAQEQGKL 409
GKPP K E+ KR E RE+A++ +A E+G L
Sbjct: 81 GKPPEFKKKEIEKRREAREEAKEKWYEALERGNL 114
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 51/148 (34%), Positives = 85/148 (57%), Gaps = 20/148 (13%)
Query: 60 KAPCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFH----- 114
+AP E EAQ A M KVYA+A++D D+L FG+ L+R++T + RKLP + +
Sbjct: 148 QAPSEGEAQAAYMAARKKVYASASQDYDSLLFGAPRLVRNVTITGRRKLPGKNVYVEVRP 207
Query: 115 ----LEKVLEGMELSHEEFIDLCILLGCDYC-DSIRGIGPKRAIELIKEHRS-IEKILEN 168
LE+VL+ + + E+ I++ IL+G DY I+GIGPK+A+ ++K + ++K ++
Sbjct: 208 ELIVLEEVLKELGIDREKLIEMAILVGTDYNPGGIKGIGPKKALTIVKRTKDPLKKYNKD 267
Query: 169 IDTKKYTVPEGWLYKEARELFRHPEVAD 196
+ Y + +E F +P V D
Sbjct: 268 SEVDLYAI---------KEFFLNPPVTD 286
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 23/52 (44%), Positives = 39/52 (75%)
Query: 3 LKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSSTTQGRLDSFFTIR 54
LKW +PDE+G++K+LC + +F+E+R++NG ++L KA + Q L+S+F R
Sbjct: 290 LKWREPDEEGILKFLCDEHDFSEERVKNGLERLKKAVKAGKQATLESWFGKR 341
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 23/52 (44%), Positives = 38/52 (73%)
Query: 409 LKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSTTTQGRLDSFFTIR 460
LKW +PDE+G++K+LC + +F+E+R++NG ++L KA Q L+S+F R
Sbjct: 290 LKWREPDEEGILKFLCDEHDFSEERVKNGLERLKKAVKAGKQATLESWFGKR 341
>gi|229579856|ref|YP_002838255.1| flap endonuclease-1 [Sulfolobus islandicus Y.G.57.14]
gi|238620410|ref|YP_002915236.1| flap endonuclease-1 [Sulfolobus islandicus M.16.4]
gi|284998466|ref|YP_003420234.1| Xpg I [Sulfolobus islandicus L.D.8.5]
gi|304372803|ref|YP_003858299.1| flap-1 endonuclease [Sulfolobus islandicus L.S.2.15]
gi|385776538|ref|YP_005649106.1| XPG I domain-containing protein [Sulfolobus islandicus REY15A]
gi|228010571|gb|ACP46333.1| XPG I domain protein [Sulfolobus islandicus Y.G.57.14]
gi|238381480|gb|ACR42568.1| XPG I domain protein [Sulfolobus islandicus M.16.4]
gi|284446362|gb|ADB87864.1| Xpg I [Sulfolobus islandicus L.D.8.5]
gi|323475286|gb|ADX85892.1| XPG I domain protein [Sulfolobus islandicus REY15A]
Length = 302
Score = 95.9 bits (237), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 56/156 (35%), Positives = 94/156 (60%), Gaps = 14/156 (8%)
Query: 60 KAPCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHL---- 115
+AP E EA+ A + G +A A++D D++ FG+ L+R++T + RKLP ++ ++
Sbjct: 101 QAPSEGEAEAAYLNILGFSWAAASQDYDSILFGAKRLVRNLTITGKRKLPNKDVYIDIKP 160
Query: 116 -----EKVLEGMELSHEEFIDLCILLGCDYC-DSIRGIGPKRAIELIKEHRSIEKILENI 169
E +L+ + ++ E+ ID+ IL+G DY D I+GIGP+RA+++IK++ IEK +E
Sbjct: 161 ELIETELLLKKLGITREQLIDISILIGTDYNPDGIKGIGPERALKIIKKYGKIEKAIEYG 220
Query: 170 DTKKYTVPEGWLYKEARELFRHPEVADPETIEFIDL 205
+ K + + E R LF P+V PE E +DL
Sbjct: 221 EISKRDIT--FNIDEIRSLFLKPQVVKPE--ETLDL 252
Score = 76.6 bits (187), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 35/67 (52%), Positives = 48/67 (71%)
Query: 343 MSVDGEPTSHLMGTFYRTIRLVEHGLKPIYVFDGKPPTLKSGELNKRMEKREDAQKALAK 402
M G TSHL G FYRTI ++E G+ PIYVFDGKPP KS EL +R + +E+A++ L +
Sbjct: 1 MDSHGRITSHLSGLFYRTINILEEGVIPIYVFDGKPPEQKSEELERRRKIKEEAERKLER 60
Query: 403 AQEQGKL 409
A+ +GK+
Sbjct: 61 AKSEGKI 67
Score = 54.3 bits (129), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/71 (40%), Positives = 44/71 (61%), Gaps = 3/71 (4%)
Query: 232 FIDLCILLGCDYC-DSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGWLYKEARE 290
ID+ IL+G DY D I+GIGP+RA+++IK++ IEK +E + K + + E R
Sbjct: 179 LIDISILIGTDYNPDGIKGIGPERALKIIKKYGKIEKAIEYGEISKRDIT--FNIDEIRS 236
Query: 291 LFRHPEIADPE 301
LF P++ PE
Sbjct: 237 LFLKPQVVKPE 247
Score = 43.1 bits (100), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 35/54 (64%), Gaps = 4/54 (7%)
Query: 2 TLKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLK----ARSSTTQGRLDSFF 51
TL ++P+E +V L + NF+E+R++NG ++L+K A+ ++ Q LD +F
Sbjct: 249 TLDLNEPNEKDIVNILVNEHNFSEERVKNGIERLIKAIREAKGASRQTGLDRWF 302
Score = 40.4 bits (93), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 33/53 (62%), Gaps = 4/53 (7%)
Query: 409 LKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLK----ARSTTTQGRLDSFF 457
L ++P+E +V L + NF+E+R++NG ++L+K A+ + Q LD +F
Sbjct: 250 LDLNEPNEKDIVNILVNEHNFSEERVKNGIERLIKAIREAKGASRQTGLDRWF 302
>gi|118596594|dbj|BAF37956.1| putative flap endonuclease-1 [Sulfolobus sp. G81]
Length = 304
Score = 95.9 bits (237), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 57/156 (36%), Positives = 93/156 (59%), Gaps = 13/156 (8%)
Query: 60 KAPCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLE--- 116
+AP E EA+ A + G +ATA++D D+L FG+ L+R++T S RKLP ++ ++E
Sbjct: 103 QAPSEGEAEAAYINILGLSWATASQDYDSLLFGAKRLVRNLTLSGKRKLPGKDVYVEIKP 162
Query: 117 ------KVLEGMELSHEEFIDLCILLGCDYC-DSIRGIGPKRAIELIKEHRSIEKILENI 169
+L+ + L+ E+ ID+ I++G DY D I+G G K A +IK++ S+EK +E
Sbjct: 163 ELIELDTLLKKLGLTREQLIDIGIIVGTDYNPDGIKGYGVKTAYRIIKKYGSLEKAIEKG 222
Query: 170 DTKKYTVPEGWLYKEARELFRHPEVADP-ETIEFID 204
+ K V + +E R LF +P+V +P E +E D
Sbjct: 223 EIPKIKV--NFNVEEIRSLFLNPQVVEPKENLELAD 256
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 36/71 (50%), Positives = 50/71 (70%)
Query: 343 MSVDGEPTSHLMGTFYRTIRLVEHGLKPIYVFDGKPPTLKSGELNKRMEKREDAQKALAK 402
M G TSHL G FYRTI ++E G+ PIYVFDGKPP K+ EL +R + +E+A+K L +
Sbjct: 1 MDSQGRVTSHLNGLFYRTISILEEGIIPIYVFDGKPPEQKAQELERRKKVKEEAEKKLEQ 60
Query: 403 AQEQGKLKWSD 413
A+ +G +K S+
Sbjct: 61 AKAEGNIKTSE 71
Score = 48.9 bits (115), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 46/76 (60%), Gaps = 4/76 (5%)
Query: 232 FIDLCILLGCDYC-DSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGWLYKEARE 290
ID+ I++G DY D I+G G K A +IK++ S+EK +E + K V + +E R
Sbjct: 181 LIDIGIIVGTDYNPDGIKGYGVKTAYRIIKKYGSLEKAIEKGEIPKIKV--NFNVEEIRS 238
Query: 291 LFRHPEIADP-ETIEL 305
LF +P++ +P E +EL
Sbjct: 239 LFLNPQVVEPKENLEL 254
>gi|118596582|dbj|BAF37950.1| putative flap endonuclease-1 [Sulfolobus sp. Tu A]
gi|118596584|dbj|BAF37951.1| putative flap endonuclease-1 [Sulfolobus sp. Tu B-1]
gi|118596586|dbj|BAF37952.1| putative flap endonuclease-1 [Sulfolobus sp. Sko-3]
gi|118596588|dbj|BAF37953.1| putative flap endonuclease-1 [Sulfolobus sp. Ta]
Length = 304
Score = 95.9 bits (237), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 56/156 (35%), Positives = 93/156 (59%), Gaps = 13/156 (8%)
Query: 60 KAPCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLE--- 116
+AP E EA+ A + G +ATA++D D+L FG+ L+R++T + RKLP ++ ++E
Sbjct: 103 QAPSEGEAEAAYINILGLSWATASQDYDSLLFGAKRLIRNLTLTGKRKLPGKDVYVEIKP 162
Query: 117 ------KVLEGMELSHEEFIDLCILLGCDYC-DSIRGIGPKRAIELIKEHRSIEKILENI 169
+L+ + L+ E+ ID+ I++G DY D I+G G K A +IK++ S+EK +E
Sbjct: 163 ELIELDTLLKKLGLTREQLIDIGIIVGTDYNPDGIKGYGVKTAYRIIKKYGSLEKAIEKG 222
Query: 170 DTKKYTVPEGWLYKEARELFRHPEVADP-ETIEFID 204
+ K V + +E R LF P+V +P E +E +D
Sbjct: 223 EIPKIKV--NFNVEEIRSLFLKPQVVEPKENLELVD 256
Score = 66.6 bits (161), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 36/71 (50%), Positives = 50/71 (70%)
Query: 343 MSVDGEPTSHLMGTFYRTIRLVEHGLKPIYVFDGKPPTLKSGELNKRMEKREDAQKALAK 402
M G TSHL G FYRTI ++E G+ PIYVFDGKPP K+ EL +R + +E+A+K L +
Sbjct: 1 MDSQGRVTSHLNGLFYRTISILEEGIIPIYVFDGKPPEQKAQELERRKKVKEEAEKKLEQ 60
Query: 403 AQEQGKLKWSD 413
A+ +G +K S+
Sbjct: 61 AKTEGSIKTSE 71
Score = 49.7 bits (117), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 30/77 (38%), Positives = 46/77 (59%), Gaps = 4/77 (5%)
Query: 232 FIDLCILLGCDYC-DSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGWLYKEARE 290
ID+ I++G DY D I+G G K A +IK++ S+EK +E + K V + +E R
Sbjct: 181 LIDIGIIVGTDYNPDGIKGYGVKTAYRIIKKYGSLEKAIEKGEIPKIKV--NFNVEEIRS 238
Query: 291 LFRHPEIADP-ETIELV 306
LF P++ +P E +ELV
Sbjct: 239 LFLKPQVVEPKENLELV 255
>gi|332157650|ref|YP_004422929.1| flap endonuclease-1 [Pyrococcus sp. NA2]
gi|331033113|gb|AEC50925.1| flap endonuclease-1 [Pyrococcus sp. NA2]
Length = 342
Score = 95.9 bits (237), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 48/94 (51%), Positives = 61/94 (64%), Gaps = 1/94 (1%)
Query: 317 SRKICIDASMSLYQFLIAVRS-EGNQLMSVDGEPTSHLMGTFYRTIRLVEHGLKPIYVFD 375
+KI IDA ++YQFL +R +G LM G TSHL G FYRTI L+E G+KP+YVFD
Sbjct: 21 GKKIAIDALNAIYQFLSTIRQRDGTPLMDSKGRMTSHLSGLFYRTINLMEAGIKPVYVFD 80
Query: 376 GKPPTLKSGELNKRMEKREDAQKALAKAQEQGKL 409
GKPP K EL KR E RE+A+ +A +G +
Sbjct: 81 GKPPEFKKKELEKRREAREEAEVKWREALARGDI 114
Score = 93.6 bits (231), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 53/148 (35%), Positives = 85/148 (57%), Gaps = 20/148 (13%)
Query: 60 KAPCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFH----- 114
+AP E EAQ A M G VYA+A++D D+L FG+ L+R++T + RK+P ++ +
Sbjct: 148 QAPSEGEAQAAYMAMKGDVYASASQDYDSLLFGAPRLVRNLTITGKRKMPGKDVYVEVKP 207
Query: 115 ----LEKVLEGMELSHEEFIDLCILLGCDYC-DSIRGIGPKRAIELIKEHRS-IEKILEN 168
LE VL ++++ E+ I+L IL+G DY I+GIGPK+A+E++K + + K +
Sbjct: 208 ELIILEDVLNQLKITREKLIELAILVGTDYNPGGIKGIGPKKALEIVKYSKDPLAKFQKQ 267
Query: 169 IDTKKYTVPEGWLYKEARELFRHPEVAD 196
D Y + +E F +P V D
Sbjct: 268 SDVDLYQI---------KEFFLNPPVTD 286
Score = 57.0 bits (136), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 40/54 (74%)
Query: 2 TLKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSSTTQGRLDSFFTIRR 55
+L W +PDE+G++++LC + +F+E+R++NG ++L KA + Q L+S+F +R
Sbjct: 289 SLTWKEPDEEGIIRFLCDEHDFSEERVKNGIERLKKAIKAGKQSTLESWFMKKR 342
Score = 55.8 bits (133), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 38/53 (71%)
Query: 409 LKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSTTTQGRLDSFFTIRR 461
L W +PDE+G++++LC + +F+E+R++NG ++L KA Q L+S+F +R
Sbjct: 290 LTWKEPDEEGIIRFLCDEHDFSEERVKNGIERLKKAIKAGKQSTLESWFMKKR 342
>gi|118596592|dbj|BAF37955.1| putative flap endonuclease-1 [Sulfolobus sp. NO82]
Length = 304
Score = 95.9 bits (237), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 57/156 (36%), Positives = 93/156 (59%), Gaps = 13/156 (8%)
Query: 60 KAPCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLE--- 116
+AP E EA+ A + G +ATA++D D+L FG+ L+R++T S RKLP ++ ++E
Sbjct: 103 QAPSEGEAEAAYINILGLSWATASQDYDSLLFGAKRLVRNLTLSGKRKLPGKDVYVEIKP 162
Query: 117 ------KVLEGMELSHEEFIDLCILLGCDYC-DSIRGIGPKRAIELIKEHRSIEKILENI 169
+L+ + L+ E+ ID+ I++G DY D I+G G K A +IK++ S+EK +E
Sbjct: 163 ELIELDTLLKKLGLTREQLIDIGIIVGTDYNPDGIKGYGVKTAYRIIKKYGSLEKAIEKG 222
Query: 170 DTKKYTVPEGWLYKEARELFRHPEVADP-ETIEFID 204
+ K V + +E R LF +P+V +P E +E D
Sbjct: 223 EIPKIKV--NFNVEEIRSLFLNPQVVEPKENLELAD 256
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 36/71 (50%), Positives = 50/71 (70%)
Query: 343 MSVDGEPTSHLMGTFYRTIRLVEHGLKPIYVFDGKPPTLKSGELNKRMEKREDAQKALAK 402
M G TSHL G FYRTI ++E G+ PIYVFDGKPP K+ EL +R + +E+A+K L +
Sbjct: 1 MDSQGRVTSHLNGLFYRTISILEEGIIPIYVFDGKPPEQKAQELERRKKVKEEAEKKLEQ 60
Query: 403 AQEQGKLKWSD 413
A+ +G +K S+
Sbjct: 61 AKAEGNIKTSE 71
Score = 48.5 bits (114), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 46/76 (60%), Gaps = 4/76 (5%)
Query: 232 FIDLCILLGCDYC-DSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGWLYKEARE 290
ID+ I++G DY D I+G G K A +IK++ S+EK +E + K V + +E R
Sbjct: 181 LIDIGIIVGTDYNPDGIKGYGVKTAYRIIKKYGSLEKAIEKGEIPKIKV--NFNVEEIRS 238
Query: 291 LFRHPEIADP-ETIEL 305
LF +P++ +P E +EL
Sbjct: 239 LFLNPQVVEPKENLEL 254
>gi|242398519|ref|YP_002993943.1| Flap structure-specific endonuclease [Thermococcus sibiricus MM
739]
gi|259645975|sp|C6A1U9.1|FEN_THESM RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|242264912|gb|ACS89594.1| Flap structure-specific endonuclease [Thermococcus sibiricus MM
739]
Length = 340
Score = 95.5 bits (236), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 49/94 (52%), Positives = 60/94 (63%), Gaps = 1/94 (1%)
Query: 317 SRKICIDASMSLYQFLIAVR-SEGNQLMSVDGEPTSHLMGTFYRTIRLVEHGLKPIYVFD 375
RK+ IDA ++YQFL +R +G LM G TSHL G FYRTI L+E G+KP YVFD
Sbjct: 21 GRKVAIDAFNAIYQFLSTIRQKDGTPLMDSKGRITSHLSGLFYRTINLMEAGIKPAYVFD 80
Query: 376 GKPPTLKSGELNKRMEKREDAQKALAKAQEQGKL 409
GKPP K EL KR E RE+A + A +G+L
Sbjct: 81 GKPPEFKKKELEKRAETREEALEKWEIALARGEL 114
Score = 91.3 bits (225), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 45/108 (41%), Positives = 72/108 (66%), Gaps = 10/108 (9%)
Query: 60 KAPCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFH----- 114
+AP E EAQ A M G V+A+A++D D+L FG+ L+R++T + RKLP ++ +
Sbjct: 148 QAPSEGEAQAAYMASKGDVWASASQDYDSLLFGTPKLVRNLTITGKRKLPGKDVYIEVKP 207
Query: 115 ----LEKVLEGMELSHEEFIDLCILLGCDYC-DSIRGIGPKRAIELIK 157
LE VL+ ++L+ E+ I+L IL+G DY I+G+GPK+A+E++K
Sbjct: 208 ELILLEDVLKELKLTREKLIELAILVGTDYNPGGIKGLGPKKALEIVK 255
Score = 53.1 bits (126), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 36/50 (72%)
Query: 408 KLKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSTTTQGRLDSFF 457
KL+W PDE+ ++K+LC + +F+E+R++NG ++L K T Q LD++F
Sbjct: 289 KLEWKLPDEESIIKFLCDEHDFSEERVKNGLERLKKVTKTGKQFTLDTWF 338
Score = 50.1 bits (118), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 35/49 (71%)
Query: 3 LKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSSTTQGRLDSFF 51
L+W PDE+ ++K+LC + +F+E+R++NG ++L K + Q LD++F
Sbjct: 290 LEWKLPDEESIIKFLCDEHDFSEERVKNGLERLKKVTKTGKQFTLDTWF 338
>gi|282165429|ref|YP_003357814.1| flap structure-specific endonuclease [Methanocella paludicola
SANAE]
gi|282157743|dbj|BAI62831.1| flap structure-specific endonuclease [Methanocella paludicola
SANAE]
Length = 339
Score = 95.5 bits (236), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 52/151 (34%), Positives = 84/151 (55%), Gaps = 15/151 (9%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLP---------VQ 111
AP E EAQ A MV+ G ++D D+L FG+ ++R++T + RK+P Q
Sbjct: 148 APSEGEAQAAYMVQKGAADFVGSQDYDSLLFGAPRMVRNVTITGRRKIPRRGVYVDVKPQ 207
Query: 112 EFHLEKVLEGMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDT 171
L++VLE +E++ E+ ID+ IL+G D+ I +GPK A++L+K+H + IL+ +
Sbjct: 208 IVELKEVLETLEVTREQLIDMGILVGTDFNPGIYKVGPKTALKLVKKHPDMRAILDELGQ 267
Query: 172 KKYTVPEGWLYKEARELFRHPEVADPETIEF 202
Y+E RE F HP D +I++
Sbjct: 268 DIEN------YQEIREFFLHPPTTDDYSIKW 292
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 40/83 (48%), Positives = 53/83 (63%), Gaps = 1/83 (1%)
Query: 317 SRKICIDASMSLYQFLIAVRS-EGNQLMSVDGEPTSHLMGTFYRTIRLVEHGLKPIYVFD 375
+ I IDA +LYQFL +R +G L+ GE TSHL G YR LVE G+KP++V+D
Sbjct: 21 GKVIAIDAFNTLYQFLSIIRQMDGTPLVDDKGEVTSHLSGIIYRVTNLVEQGIKPVFVYD 80
Query: 376 GKPPTLKSGELNKRMEKREDAQK 398
GKPP LK+ + R E RE A++
Sbjct: 81 GKPPVLKAETIKARREVREAARQ 103
Score = 49.3 bits (116), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 39/73 (53%), Gaps = 6/73 (8%)
Query: 232 FIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGWLYKEAREL 291
ID+ IL+G D+ I +GPK A++L+K+H + IL+ + Y+E RE
Sbjct: 225 LIDMGILVGTDFNPGIYKVGPKTALKLVKKHPDMRAILDELGQDIEN------YQEIREF 278
Query: 292 FRHPEIADPETIE 304
F HP D +I+
Sbjct: 279 FLHPPTTDDYSIK 291
>gi|14591211|ref|NP_143287.1| flap endonuclease-1 [Pyrococcus horikoshii OT3]
gi|28380013|sp|O50123.1|FEN_PYRHO RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|3257838|dbj|BAA30521.1| 343aa long hypothetical 5' nuclease [Pyrococcus horikoshii OT3]
Length = 343
Score = 95.5 bits (236), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 49/94 (52%), Positives = 60/94 (63%), Gaps = 1/94 (1%)
Query: 317 SRKICIDASMSLYQFLIAVRS-EGNQLMSVDGEPTSHLMGTFYRTIRLVEHGLKPIYVFD 375
+KI IDA ++YQFL +R +G LM G TSHL G FYRTI L+E G+KP YVFD
Sbjct: 21 GKKIAIDALNAIYQFLSTIRQRDGTPLMDSKGRITSHLSGLFYRTINLMEAGIKPAYVFD 80
Query: 376 GKPPTLKSGELNKRMEKREDAQKALAKAQEQGKL 409
GKPP K EL KR E RE+A+ +A +G L
Sbjct: 81 GKPPEFKRKELEKRREAREEAELKWKEALAKGNL 114
Score = 91.7 bits (226), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 50/148 (33%), Positives = 86/148 (58%), Gaps = 20/148 (13%)
Query: 60 KAPCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLE--- 116
+AP E EAQ A M G VYA+A++D D+L FG+ L+R++T + RK+P ++ ++E
Sbjct: 148 QAPSEGEAQAAYMASKGDVYASASQDYDSLLFGAPRLIRNLTITGKRKMPGKDVYVEIKP 207
Query: 117 ------KVLEGMELSHEEFIDLCILLGCDYC-DSIRGIGPKRAIELIKEHR-SIEKILEN 168
+VL+ ++++ E+ I+L IL+G DY ++GIGPK+A+E+++ R + K
Sbjct: 208 ELVVLDEVLKELKITREKLIELAILVGTDYNPGGVKGIGPKKALEIVRYSRDPLAKFQRQ 267
Query: 169 IDTKKYTVPEGWLYKEARELFRHPEVAD 196
D Y + +E F +P V +
Sbjct: 268 SDVDLYAI---------KEFFLNPPVTN 286
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 40/54 (74%)
Query: 2 TLKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSSTTQGRLDSFFTIRR 55
+L W +PDE+G++K+LC + NF+E+R++NG ++L KA + Q L+S+F ++
Sbjct: 289 SLSWKEPDEEGILKFLCDEHNFSEERVKNGIERLKKAIKAGRQSTLESWFVKKK 342
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 38/53 (71%)
Query: 409 LKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSTTTQGRLDSFFTIRR 461
L W +PDE+G++K+LC + NF+E+R++NG ++L KA Q L+S+F ++
Sbjct: 290 LSWKEPDEEGILKFLCDEHNFSEERVKNGIERLKKAIKAGRQSTLESWFVKKK 342
>gi|229581484|ref|YP_002839883.1| flap endonuclease-1 [Sulfolobus islandicus Y.N.15.51]
gi|228012200|gb|ACP47961.1| XPG I domain protein [Sulfolobus islandicus Y.N.15.51]
Length = 302
Score = 95.1 bits (235), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 55/156 (35%), Positives = 94/156 (60%), Gaps = 14/156 (8%)
Query: 60 KAPCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHL---- 115
+AP E EA+ A + G +A A++D D++ FG+ L+R++T + RKLP ++ ++
Sbjct: 101 QAPSEGEAEAAYLNILGFSWAAASQDYDSILFGAKRLVRNLTITGKRKLPNKDVYIDIKP 160
Query: 116 -----EKVLEGMELSHEEFIDLCILLGCDYC-DSIRGIGPKRAIELIKEHRSIEKILENI 169
E +L+ + ++ E+ ID+ IL+G DY D I+GIGP+RA+++IK++ IEK +E
Sbjct: 161 ELIETELLLKKLGITREQLIDISILIGTDYNPDGIKGIGPERALKIIKKYGKIEKAIEYG 220
Query: 170 DTKKYTVPEGWLYKEARELFRHPEVADPETIEFIDL 205
+ K + + E R LF P++ PE E +DL
Sbjct: 221 EISKRDIT--FNIDEIRSLFLKPQIVKPE--ETLDL 252
Score = 76.3 bits (186), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 35/67 (52%), Positives = 48/67 (71%)
Query: 343 MSVDGEPTSHLMGTFYRTIRLVEHGLKPIYVFDGKPPTLKSGELNKRMEKREDAQKALAK 402
M G TSHL G FYRTI ++E G+ PIYVFDGKPP KS EL +R + +E+A++ L +
Sbjct: 1 MDSHGRITSHLSGLFYRTINILEEGVIPIYVFDGKPPEQKSEELERRRKIKEEAERKLER 60
Query: 403 AQEQGKL 409
A+ +GK+
Sbjct: 61 AKSEGKI 67
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/71 (42%), Positives = 44/71 (61%), Gaps = 3/71 (4%)
Query: 232 FIDLCILLGCDYC-DSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGWLYKEARE 290
ID+ IL+G DY D I+GIGP+RA+++IK++ IEK +E + K + + E R
Sbjct: 179 LIDISILIGTDYNPDGIKGIGPERALKIIKKYGKIEKAIEYGEISKRDIT--FNIDEIRS 236
Query: 291 LFRHPEIADPE 301
LF P+I PE
Sbjct: 237 LFLKPQIVKPE 247
Score = 43.1 bits (100), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 35/54 (64%), Gaps = 4/54 (7%)
Query: 2 TLKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLK----ARSSTTQGRLDSFF 51
TL ++P+E +V L + NF+E+R++NG ++L+K A+ ++ Q LD +F
Sbjct: 249 TLDLNEPNEKDIVNILVNEHNFSEERVKNGIERLIKAIREAKGASRQTGLDRWF 302
Score = 40.4 bits (93), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 33/53 (62%), Gaps = 4/53 (7%)
Query: 409 LKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLK----ARSTTTQGRLDSFF 457
L ++P+E +V L + NF+E+R++NG ++L+K A+ + Q LD +F
Sbjct: 250 LDLNEPNEKDIVNILVNEHNFSEERVKNGIERLIKAIREAKGASRQTGLDRWF 302
>gi|166085101|dbj|BAF99815.1| flap endonuclease-1 [Aeropyrum pernix]
gi|166085103|dbj|BAF99816.1| flap endonuclease-1 [Aeropyrum pernix]
Length = 401
Score = 95.1 bits (235), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 45/92 (48%), Positives = 65/92 (70%), Gaps = 1/92 (1%)
Query: 320 ICIDASMSLYQFLIAVR-SEGNQLMSVDGEPTSHLMGTFYRTIRLVEHGLKPIYVFDGKP 378
+ +DA LYQFL A+R +G LM +G TSHL G FYRTI LVE G+KP+YVFDGKP
Sbjct: 78 LALDAYNMLYQFLTAIRQPDGTPLMDREGRVTSHLSGLFYRTINLVEEGIKPVYVFDGKP 137
Query: 379 PTLKSGELNKRMEKREDAQKALAKAQEQGKLK 410
P +KS E+ +R++++ +A+ +A E G+++
Sbjct: 138 PEMKSREVEERLKRKAEAEARYRRAVEAGEVE 169
Score = 89.4 bits (220), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 54/153 (35%), Positives = 83/153 (54%), Gaps = 13/153 (8%)
Query: 60 KAPCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQE------- 112
+AP E EAQ A M + G +AT ++D D+L FGS L+R++ + RKLP ++
Sbjct: 202 QAPAEGEAQAAYMARKGDAWATGSQDYDSLLFGSPRLVRNLAITGRRKLPGRDQYVEIKP 261
Query: 113 --FHLEKVLEGMELSHEEFIDLCILLGCDY-CDSIRGIGPKRAIELIKEHRSIEKILENI 169
LE +L + ++ E+ I + ILLG DY +RG GPK A+ L+K K+L ++
Sbjct: 262 EIIELETLLSKLGITREQLIAVGILLGTDYNPGGVRGYGPKTALRLVKSLGDPMKVLASV 321
Query: 170 DTKKYTVPEGWLYKEARELFRHPEVADPETIEF 202
+Y P+ ++ E F +P V D IEF
Sbjct: 322 PRGEYD-PD--YLRKVYEYFLNPPVTDDYKIEF 351
>gi|408404695|ref|YP_006862678.1| flap structure-specific endonuclease [Candidatus Nitrososphaera
gargensis Ga9.2]
gi|408365291|gb|AFU59021.1| flap structure-specific endonuclease [Candidatus Nitrososphaera
gargensis Ga9.2]
Length = 341
Score = 95.1 bits (235), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 54/153 (35%), Positives = 90/153 (58%), Gaps = 15/153 (9%)
Query: 60 KAPCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQE------- 112
+AP + EA A + + +A A++D D++ FG+ L+R++ S RK+P +
Sbjct: 148 QAPSDGEAAAAYLTRRELAFAAASQDYDSILFGAKKLVRNLAISGKRKVPNRNVYIDVEP 207
Query: 113 --FHLEKVLEGMELSHEEFIDLCILLGCDYC-DSIRGIGPKRAIELIKEHRSIEKILENI 169
F +KVL+ + L+HE+ ID+ IL+G D+ GIGPK A++LIKE+ LEN+
Sbjct: 208 EIFEHDKVLQEIGLTHEQLIDVGILIGTDFNPGGFPGIGPKTALKLIKENGK----LENV 263
Query: 170 DTKKYTVPEGWLYKEARELFRHPEVADPETIEF 202
+ K+ +P+ Y+E R++F PEV + I+F
Sbjct: 264 EKIKHLLPK-MPYQEIRDIFLKPEVPKVDRIDF 295
Score = 70.1 bits (170), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 44/130 (33%), Positives = 71/130 (54%), Gaps = 7/130 (5%)
Query: 309 VAPSSIR----ESRKICIDASMSLYQFLIAVRS-EGNQLMSVDGEPTSHLMGTFYRTIRL 363
V P+S++ + + IDA ++YQFL +R G L + GE TSHL G FYR L
Sbjct: 9 VTPASLKLPELTGKVVAIDAYNTIYQFLSIIRGPTGEPLANSKGEITSHLSGLFYRNANL 68
Query: 364 VEHGLKPIYVFDGKPPTLKSGELNKRMEKREDAQKALAKAQEQGKLKWSDPDEDGLVKYL 423
+ +K +YVFDGK LK E+ +R + +++A + A E+G+++ D + G+ +
Sbjct: 69 LGDNIKLVYVFDGKANELKMAEIQRRSQLKKEATEKYQLAVEEGRIE--DARKYGIRTAV 126
Query: 424 CGDKNFAEDR 433
DK E +
Sbjct: 127 LTDKMVEESK 136
Score = 50.1 bits (118), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 33/97 (34%), Positives = 55/97 (56%), Gaps = 9/97 (9%)
Query: 232 FIDLCILLGCDYC-DSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGWLYKEARE 290
ID+ IL+G D+ GIGPK A++LIKE+ LEN++ K+ +P+ Y+E R+
Sbjct: 226 LIDVGILIGTDFNPGGFPGIGPKTALKLIKENGK----LENVEKIKHLLPK-MPYQEIRD 280
Query: 291 LFRHPEIADPETIELVADVAPSSIRESRKICIDASMS 327
+F PE+ + I+ +V + + +C+D S S
Sbjct: 281 IFLKPEVPKVDRIDF-GEVNREKVLDF--LCVDKSFS 314
>gi|407462243|ref|YP_006773560.1| flap endonuclease-1 [Candidatus Nitrosopumilus koreensis AR1]
gi|407045865|gb|AFS80618.1| flap endonuclease-1 [Candidatus Nitrosopumilus koreensis AR1]
Length = 340
Score = 95.1 bits (235), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 55/162 (33%), Positives = 92/162 (56%), Gaps = 27/162 (16%)
Query: 60 KAPCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLE--- 116
+AP E EA A + G+ YA+A++D D++ G+ L+R+ T S RK+P + +++
Sbjct: 148 EAPSEGEATAAHLTNTGQAYASASQDFDSILCGAKRLVRNFTNSGRRKIPNKNTYIDIVP 207
Query: 117 ------KVLEGMELSHEEFIDLCILLGCDYC-DSIRGIGPKRAIELIKEHRSIEKI---- 165
K L+ +EL+ EE ID+ IL+G D+ + IGPK A+++IK+H +E I
Sbjct: 208 EIIETQKTLDSLELTREELIDVGILIGTDFNPNGFERIGPKTALKMIKQHSRLEDIPQIQ 267
Query: 166 --LENIDTKKYTVPEGWLYKEARELFRHPEVADPETIEFIDL 205
L+ ID +++ R++F +PEVAD + I F D+
Sbjct: 268 EQLQEID-----------FQQIRKIFLNPEVADVKEIIFKDV 298
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 45/113 (39%), Positives = 70/113 (61%), Gaps = 8/113 (7%)
Query: 317 SRKICIDASMSLYQFLIAVRS-EGNQLMSVDGEPTSHLMGTFYRTIRLVEHGLKPIYVFD 375
++ I IDA ++YQFL ++R +G QL +G TSHL G YR + + G+KP+YVFD
Sbjct: 21 NKVIAIDAYNAIYQFLASIRGPDGLQLSDAEGRITSHLSGLLYRNVNFLSLGIKPVYVFD 80
Query: 376 GKPPTLKSGELNKRMEKREDA----QKALAKAQEQGKLKWSDPD---EDGLVK 421
GKPP+LK+ E+ +R + + DA +KA+A + K++ +DG+VK
Sbjct: 81 GKPPSLKTAEIERRKQIKMDATIKYEKAIADGNMEDARKYAQQTTSMKDGMVK 133
Score = 44.7 bits (104), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 44/79 (55%), Gaps = 18/79 (22%)
Query: 232 FIDLCILLGCDYC-DSIRGIGPKRAIELIKEHRSIEKI------LENIDTKKYTVPEGWL 284
ID+ IL+G D+ + IGPK A+++IK+H +E I L+ ID
Sbjct: 226 LIDVGILIGTDFNPNGFERIGPKTALKMIKQHSRLEDIPQIQEQLQEID----------- 274
Query: 285 YKEARELFRHPEIADPETI 303
+++ R++F +PE+AD + I
Sbjct: 275 FQQIRKIFLNPEVADVKEI 293
>gi|327310721|ref|YP_004337618.1| flap endonuclease-1 [Thermoproteus uzoniensis 768-20]
gi|326947200|gb|AEA12306.1| flap endonuclease-1 [Thermoproteus uzoniensis 768-20]
Length = 346
Score = 94.7 bits (234), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 44/93 (47%), Positives = 61/93 (65%), Gaps = 1/93 (1%)
Query: 317 SRKICIDASMSLYQFLIAVR-SEGNQLMSVDGEPTSHLMGTFYRTIRLVEHGLKPIYVFD 375
R + +DA +LYQFL ++R +G LM G TSHL G FYRTI LVE G++P+YVFD
Sbjct: 25 GRSVALDAYNALYQFLASIRQPDGTPLMDSRGRVTSHLNGLFYRTINLVEAGIRPVYVFD 84
Query: 376 GKPPTLKSGELNKRMEKREDAQKALAKAQEQGK 408
GKPP LK E+ R +E A++ + +A +G+
Sbjct: 85 GKPPELKRAEIESRRAAKEKAREQMERAAAEGR 117
Score = 92.4 bits (228), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 54/152 (35%), Positives = 87/152 (57%), Gaps = 12/152 (7%)
Query: 60 KAPCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARK-------LPVQE 112
+AP E EAQ A M G V+ ++D D+L FG+ L+R++ S RK +P +
Sbjct: 152 QAPSEGEAQAAYMAARGSVWGAGSQDYDSLLFGAPRLVRNLAVSSRRKVGEEYVEVPPEV 211
Query: 113 FHLEKVLEGMEL-SHEEFIDLCILLGCDYC-DSIRGIGPKRAIELIKEHRSIEKILENID 170
L+KVL+ ++L S E+ +D+ ILLG DY D + G+GP++A+++I E S+E L+ +
Sbjct: 212 IELDKVLKALKLKSREQLVDIAILLGTDYNPDGVPGVGPQKALKIILEQGSLENALKTV- 270
Query: 171 TKKYTVPEGWLYKEARELFRHPEVADPETIEF 202
K P L E +++F +P D +EF
Sbjct: 271 LKGVKWPVDPL--EIKKIFLNPPATDQYRVEF 300
Score = 43.5 bits (101), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 42/75 (56%), Gaps = 4/75 (5%)
Query: 232 FIDLCILLGCDYC-DSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGWLYKEARE 290
+D+ ILLG DY D + G+GP++A+++I E S+E L+ + K P L E ++
Sbjct: 229 LVDIAILLGTDYNPDGVPGVGPQKALKIILEQGSLENALKTV-LKGVKWPVDPL--EIKK 285
Query: 291 LFRHPEIADPETIEL 305
+F +P D +E
Sbjct: 286 IFLNPPATDQYRVEF 300
Score = 39.7 bits (91), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 34/55 (61%)
Query: 403 AQEQGKLKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSTTTQGRLDSFF 457
A +Q ++++ +PDE +++ L + +F+ DR+ G ++L +A S LDSFF
Sbjct: 292 ATDQYRVEFREPDEAKVLEILVEEHDFSRDRVEKGLERLRRALSKAKTSSLDSFF 346
>gi|150401914|ref|YP_001325680.1| flap endonuclease-1 [Methanococcus aeolicus Nankai-3]
gi|166973699|sp|A6UX46.1|FEN_META3 RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|150014617|gb|ABR57068.1| XPG I [Methanococcus aeolicus Nankai-3]
Length = 326
Score = 94.7 bits (234), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 50/139 (35%), Positives = 82/139 (58%), Gaps = 19/139 (13%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVLE 120
AP E EAQCA M+K G Y ++D DAL +G+ +R++T S P++ +E +L+
Sbjct: 149 APSEGEAQCAHMIKNGDAYCVVSQDYDALLYGAPRTVRNITASNK---PLELMEIEDILK 205
Query: 121 GMELSHEEFIDLCILLGCDY-CDSIRGIGPKRAIELIKEHRSIEKI--LENIDTKKYTVP 177
+++S ++ ID+ IL+G DY I+GIGPK+A+ +IK + E I +EN
Sbjct: 206 PLDISIDDLIDMAILIGTDYNIGGIKGIGPKKALTIIKNKKMNEYIKDIEN--------- 256
Query: 178 EGWLYKEARELFRHPEVAD 196
Y+E + +F++P+V D
Sbjct: 257 ----YEEIKNIFKNPKVVD 271
Score = 66.6 bits (161), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 44/129 (34%), Positives = 72/129 (55%), Gaps = 9/129 (6%)
Query: 316 ESRKICIDASMSLYQFLIAVR-SEGNQLMSVDGEPTSHLMGTFYRTIRLVEHGLKPIYVF 374
+++ + ID+ +YQFL ++R +G L + GE TS G FY+TI L+ + + PI+VF
Sbjct: 20 KNKTVAIDSMNIIYQFLSSIRLRDGAPLRNSKGEITSPYNGIFYKTIYLLNNEITPIWVF 79
Query: 375 DGKPPTLKSGELNKRMEKREDAQKALAKAQEQGKLKWSDPDEDGLVKYLCGDKNFAEDRI 434
DGKPP LK ++ RE+ +K KA + ++ + + + + KY N+ E
Sbjct: 80 DGKPPELK-------LKTREERRKVKEKASKDYEIAKREENIEDMQKY-AKRINYLEPNT 131
Query: 435 RNGAKKLLK 443
+ KKLLK
Sbjct: 132 VDNCKKLLK 140
Score = 46.2 bits (108), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 40/71 (56%), Gaps = 16/71 (22%)
Query: 232 FIDLCILLGCDY-CDSIRGIGPKRAIELIKEHRSIEKI--LENIDTKKYTVPEGWLYKEA 288
ID+ IL+G DY I+GIGPK+A+ +IK + E I +EN Y+E
Sbjct: 214 LIDMAILIGTDYNIGGIKGIGPKKALTIIKNKKMNEYIKDIEN-------------YEEI 260
Query: 289 RELFRHPEIAD 299
+ +F++P++ D
Sbjct: 261 KNIFKNPKVVD 271
>gi|302348204|ref|YP_003815842.1| flap endonuclease-1 [Acidilobus saccharovorans 345-15]
gi|302328616|gb|ADL18811.1| flap endonuclease-1 [Acidilobus saccharovorans 345-15]
Length = 350
Score = 94.4 bits (233), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 46/91 (50%), Positives = 61/91 (67%), Gaps = 1/91 (1%)
Query: 320 ICIDASMSLYQFLIAVR-SEGNQLMSVDGEPTSHLMGTFYRTIRLVEHGLKPIYVFDGKP 378
I +D LYQFL A+R +G L G TSHL G FYRTI LVE GLKP+YVFDGKP
Sbjct: 27 IALDGYNMLYQFLSAIRQPDGTPLKDSQGRVTSHLSGLFYRTINLVEEGLKPVYVFDGKP 86
Query: 379 PTLKSGELNKRMEKREDAQKALAKAQEQGKL 409
P +K E+ +R+ ++++A + AKA+E G +
Sbjct: 87 PEMKRKEIEERVARKKEAAEKYAKAKESGSI 117
Score = 79.7 bits (195), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 40/123 (32%), Positives = 73/123 (59%), Gaps = 10/123 (8%)
Query: 60 KAPCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLE--- 116
+AP + EAQ A + + G +A ++D D+L FG+ L+R++ + RKLP ++ ++E
Sbjct: 151 QAPADGEAQAAHLAQKGDAWAAGSQDYDSLLFGAPRLVRNLAITGKRKLPNKDEYVEVKP 210
Query: 117 ------KVLEGMELSHEEFIDLCILLGCDY-CDSIRGIGPKRAIELIKEHRSIEKILENI 169
+L+ + ++ E+ I L IL+G D+ D I+G GPK A+ +K + + K LE+I
Sbjct: 211 EIIDLNAMLKALGITREQLILLGILVGTDFDPDGIKGYGPKTALNFVKGVKDVTKALESI 270
Query: 170 DTK 172
++
Sbjct: 271 KSQ 273
>gi|296242726|ref|YP_003650213.1| flap endonuclease 1 [Thermosphaera aggregans DSM 11486]
gi|296095310|gb|ADG91261.1| flap endonuclease 1 [Thermosphaera aggregans DSM 11486]
Length = 353
Score = 94.4 bits (233), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 49/98 (50%), Positives = 63/98 (64%), Gaps = 1/98 (1%)
Query: 314 IRESRKICIDASMSLYQFLIAVR-SEGNQLMSVDGEPTSHLMGTFYRTIRLVEHGLKPIY 372
+ + + I IDA +LYQFL A+R +G LM G TSHL G FYRTI LVE GLK +Y
Sbjct: 22 VLKGKVIAIDAYNALYQFLAAIRQPDGTPLMDSQGRITSHLSGLFYRTINLVEEGLKTVY 81
Query: 373 VFDGKPPTLKSGELNKRMEKREDAQKALAKAQEQGKLK 410
VFDGKPP LK+ EL +R +E++ + A E G L+
Sbjct: 82 VFDGKPPELKARELERRRALKEESARKYEAAVEAGDLE 119
Score = 89.7 bits (221), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 59/153 (38%), Positives = 86/153 (56%), Gaps = 14/153 (9%)
Query: 60 KAPCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVL 119
+AP E EAQ A + K G YA+A++D D+L FGS L+R++T S RKLP +E ++E
Sbjct: 152 QAPAEGEAQAAYLAKKGDAYASASQDYDSLLFGSPRLIRNLTISGRRKLPRREEYVEVKP 211
Query: 120 EGME---------LSHEEFIDLCILLGCDYC-DSIRGIGPKRAIELIKEHRSIEKILENI 169
E +E L+ E ID+ IL+G DY + GIG K+A +L+K + SIEKI + +
Sbjct: 212 EMIELNTLLLKLSLTLENLIDVGILVGTDYNPEGFEGIGVKKAYQLVKTYGSIEKIPKAL 271
Query: 170 DTKKYTVPEGWLYKEARELFRHPEVADPETIEF 202
+ V E ++ F P V D IE+
Sbjct: 272 LKSSFEVD----VLEIKKYFLQPPVTDSYKIEW 300
Score = 40.8 bits (94), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 40/75 (53%), Gaps = 5/75 (6%)
Query: 231 SFIDLCILLGCDYC-DSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGWLYKEAR 289
+ ID+ IL+G DY + GIG K+A +L+K + SIEKI + + + V E +
Sbjct: 229 NLIDVGILVGTDYNPEGFEGIGVKKAYQLVKTYGSIEKIPKALLKSSFEVD----VLEIK 284
Query: 290 ELFRHPEIADPETIE 304
+ F P + D IE
Sbjct: 285 KYFLQPPVTDSYKIE 299
Score = 40.4 bits (93), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 27/44 (61%)
Query: 408 KLKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSTTTQG 451
K++W +PDE + + L + +F+EDR+RN ++ KA +G
Sbjct: 297 KIEWREPDEKSVFEILVNEHDFSEDRVRNALERFTKAYKENIKG 340
Score = 38.9 bits (89), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 26/43 (60%)
Query: 3 LKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSSTTQG 45
++W +PDE + + L + +F+EDR+RN ++ KA +G
Sbjct: 298 IEWREPDEKSVFEILVNEHDFSEDRVRNALERFTKAYKENIKG 340
>gi|124028216|ref|YP_001013536.1| flap endonuclease-1 [Hyperthermus butylicus DSM 5456]
gi|166973697|sp|A2BMI0.1|FEN_HYPBU RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|123978910|gb|ABM81191.1| Endonuclease [Hyperthermus butylicus DSM 5456]
Length = 350
Score = 94.4 bits (233), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 51/153 (33%), Positives = 88/153 (57%), Gaps = 14/153 (9%)
Query: 60 KAPCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLE--- 116
+AP E EAQ A M + G +A A++D D+L FGS L+R++ + RKLP ++ ++E
Sbjct: 151 QAPAEGEAQAAFMARRGDAWAAASQDYDSLLFGSPRLVRNLAITGRRKLPRKDVYVEIKP 210
Query: 117 ------KVLEGMELSHEEFIDLCILLGCDY-CDSIRGIGPKRAIELIKEHRSIEKILENI 169
K+L+ + ++ E+ + L IL+G DY D ++GIGPK A++++K HR K+L+ +
Sbjct: 211 ELIELDKLLKALGITREQLVALGILIGTDYNPDGVKGIGPKTALKMVKAHRDPVKLLQGL 270
Query: 170 DTKKYTVPEGWLYKEARELFRHPEVADPETIEF 202
++ +Y E F +P V +E+
Sbjct: 271 PRHEFPTDPLKIY----EYFLNPPVTTDYKLEW 299
Score = 89.4 bits (220), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 45/92 (48%), Positives = 60/92 (65%), Gaps = 1/92 (1%)
Query: 320 ICIDASMSLYQFLIAVR-SEGNQLMSVDGEPTSHLMGTFYRTIRLVEHGLKPIYVFDGKP 378
+ IDA +LYQFL A+R +G LM G TSHL G FYRTI L+EHG+K +YVFDGKP
Sbjct: 27 VAIDAYNALYQFLTAIRQPDGTPLMDSKGRITSHLSGLFYRTINLMEHGIKIVYVFDGKP 86
Query: 379 PTLKSGELNKRMEKREDAQKALAKAQEQGKLK 410
P +K E+ +R + +A K +A ++G K
Sbjct: 87 PEMKYLEIERRKRVKSEAVKKYEEAVKKGDTK 118
Score = 43.9 bits (102), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 38/67 (56%), Gaps = 5/67 (7%)
Query: 232 FIDLCILLGCDYC-DSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGWLYKEARE 290
+ L IL+G DY D ++GIGPK A++++K HR K+L+ + ++ +Y E
Sbjct: 229 LVALGILIGTDYNPDGVKGIGPKTALKMVKAHRDPVKLLQGLPRHEFPTDPLKIY----E 284
Query: 291 LFRHPEI 297
F +P +
Sbjct: 285 YFLNPPV 291
>gi|336477791|ref|YP_004616932.1| flap structure-specific endonuclease [Methanosalsum zhilinae DSM
4017]
gi|335931172|gb|AEH61713.1| flap structure-specific endonuclease [Methanosalsum zhilinae DSM
4017]
Length = 337
Score = 94.0 bits (232), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 49/146 (33%), Positives = 82/146 (56%), Gaps = 15/146 (10%)
Query: 60 KAPCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFH----- 114
+APCE EAQ A MVK+G A++D D+L FG+ ++R++ + RKLP ++ +
Sbjct: 148 QAPCEGEAQAAHMVKSGDANYVASQDYDSLLFGAPFVIRNIAITGKRKLPGKDAYVDVKP 207
Query: 115 ----LEKVLEGMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENID 170
LE L M ++H + +D+ + +G DY + + IG KRA+EL+K+H IE +L +
Sbjct: 208 EVIDLEHSLGQMGITHPQLVDIALCVGTDYNNGLENIGQKRALELVKKHGDIESVLRKLG 267
Query: 171 TKKYTVPEGWLYKEARELFRHPEVAD 196
+ + + R+ F +P V D
Sbjct: 268 KEIDDL------ESIRDFFLNPPVTD 287
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 42/92 (45%), Positives = 57/92 (61%), Gaps = 1/92 (1%)
Query: 317 SRKICIDASMSLYQFLIAVRS-EGNQLMSVDGEPTSHLMGTFYRTIRLVEHGLKPIYVFD 375
SR + +DA +LYQFL +R +G LM G TSHL G YR L+E G++P++VFD
Sbjct: 21 SRVVAVDAHNTLYQFLSIIRQRDGTPLMDSGGMVTSHLSGILYRFTNLIEEGIRPVFVFD 80
Query: 376 GKPPTLKSGELNKRMEKREDAQKALAKAQEQG 407
G PP KS L+KR + RE A +A+E+G
Sbjct: 81 GTPPDFKSKTLDKRRKVRETAHSRWDEAREKG 112
Score = 43.1 bits (100), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 37/68 (54%), Gaps = 6/68 (8%)
Query: 232 FIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGWLYKEAREL 291
+D+ + +G DY + + IG KRA+EL+K+H IE +L + + + + R+
Sbjct: 226 LVDIALCVGTDYNNGLENIGQKRALELVKKHGDIESVLRKLGKEIDDL------ESIRDF 279
Query: 292 FRHPEIAD 299
F +P + D
Sbjct: 280 FLNPPVTD 287
>gi|448713770|ref|ZP_21702055.1| flap endonuclease-1 [Halobiforma nitratireducens JCM 10879]
gi|445789178|gb|EMA39869.1| flap endonuclease-1 [Halobiforma nitratireducens JCM 10879]
Length = 325
Score = 94.0 bits (232), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 55/138 (39%), Positives = 74/138 (53%), Gaps = 12/138 (8%)
Query: 60 KAPCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVL 119
+AP E EAQ A MV+ G +ED DAL FG+ + LR +T +L LE L
Sbjct: 149 EAPAEGEAQAAHMVRRGDADYVGSEDYDALLFGAPLTLRQLTSKGDPEL----MDLEATL 204
Query: 120 EGMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILE-NIDTKKYTVPE 178
E +L+ E+ ID IL+G D+ D + GIGPK AI+ I EH + +LE D+ +Y
Sbjct: 205 EKHDLTLEQLIDAAILIGTDFNDGVSGIGPKTAIKAITEHGDLWSVLEARGDSVEYG--- 261
Query: 179 GWLYKEARELFRHPEVAD 196
R+LFR P V D
Sbjct: 262 ----DRVRQLFRDPNVTD 275
Score = 53.1 bits (126), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 28/72 (38%), Positives = 38/72 (52%), Gaps = 8/72 (11%)
Query: 229 LYSFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILE-NIDTKKYTVPEGWLYKE 287
L ID IL+G D+ D + GIGPK AI+ I EH + +LE D+ +Y
Sbjct: 211 LEQLIDAAILIGTDFNDGVSGIGPKTAIKAITEHGDLWSVLEARGDSVEYG-------DR 263
Query: 288 ARELFRHPEIAD 299
R+LFR P + D
Sbjct: 264 VRQLFRDPNVTD 275
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 47/90 (52%), Gaps = 2/90 (2%)
Query: 320 ICIDASMSLYQFLIAV--RSEGNQLMSVDGEPTSHLMGTFYRTIRLVEHGLKPIYVFDGK 377
+ +DA LY++L ++ + + DG ++L+G + E+ + P+ VFDG
Sbjct: 24 VAVDAHNWLYRYLTTTVKWTDSDIYTTADGTEVANLVGIVQGLPKFFENDVTPVMVFDGG 83
Query: 378 PPTLKSGELNKRMEKREDAQKALAKAQEQG 407
P LK E+ R E+R ++ L A+E+G
Sbjct: 84 PSELKEDEIESRREQRRTYEEQLETAREEG 113
>gi|159040632|ref|YP_001539884.1| flap endonuclease-1 [Caldivirga maquilingensis IC-167]
gi|189044441|sp|A8M9L3.1|FEN_CALMQ RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|157919467|gb|ABW00894.1| XPG I [Caldivirga maquilingensis IC-167]
Length = 350
Score = 93.6 bits (231), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 48/90 (53%), Positives = 60/90 (66%), Gaps = 1/90 (1%)
Query: 320 ICIDASMSLYQFLIAVR-SEGNQLMSVDGEPTSHLMGTFYRTIRLVEHGLKPIYVFDGKP 378
I +DA +LYQFL ++R +G LM G TSHL G YRTI L+E+G+KP+YVFDGKP
Sbjct: 28 IALDAYNALYQFLASIRQPDGTPLMDSQGRVTSHLSGLLYRTINLLEYGIKPVYVFDGKP 87
Query: 379 PTLKSGELNKRMEKREDAQKALAKAQEQGK 408
P LK E+ KR RE A + KA E+GK
Sbjct: 88 PELKLIEIEKRRRVREKAVEDWIKAVEEGK 117
Score = 93.2 bits (230), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 56/154 (36%), Positives = 86/154 (55%), Gaps = 14/154 (9%)
Query: 60 KAPCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVL 119
+AP E EAQ A M G V+A ++D D+ FG+ L+R++T S RKLP ++ ++E
Sbjct: 152 QAPSEGEAQAAYMASKGIVWAAGSQDYDSFLFGAPRLVRNLTISGRRKLPGRDEYVEVTP 211
Query: 120 EGMELS----------HEEFIDLCILLGCDYC-DSIRGIGPKRAIELIKEHRSIEKILEN 168
E +EL+ + IDL ILLG DY + I GIGP+RA+ LI+E+ S++K++
Sbjct: 212 ELIELNDVLKALRLRDRGQLIDLAILLGTDYNPEGIPGIGPQRALRLIQEYGSLDKLMNT 271
Query: 169 IDTKKYTVPEGWLYKEARELFRHPEVADPETIEF 202
+ K P + RE F +P V ++F
Sbjct: 272 V-LKNAQFPVDPF--KIREFFLNPPVTQEVNVKF 302
Score = 48.1 bits (113), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 40/68 (58%), Gaps = 4/68 (5%)
Query: 232 FIDLCILLGCDYC-DSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGWLYKEARE 290
IDL ILLG DY + I GIGP+RA+ LI+E+ S++K++ + K P + RE
Sbjct: 231 LIDLAILLGTDYNPEGIPGIGPQRALRLIQEYGSLDKLMNTV-LKNAQFPVDPF--KIRE 287
Query: 291 LFRHPEIA 298
F +P +
Sbjct: 288 FFLNPPVT 295
Score = 41.6 bits (96), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 37/55 (67%), Gaps = 7/55 (12%)
Query: 1 MTLKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLL----KARSSTTQGRLDSFF 51
+ +K+ +P+ED +V+ L + +F++DR++N ++L KA+ STT LDSFF
Sbjct: 298 VNVKFKEPNEDEVVRLLVEEHDFSQDRVKNALERLRKSMGKAKGSTT---LDSFF 349
Score = 39.7 bits (91), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 36/54 (66%), Gaps = 7/54 (12%)
Query: 408 KLKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLL----KARSTTTQGRLDSFF 457
+K+ +P+ED +V+ L + +F++DR++N ++L KA+ +TT LDSFF
Sbjct: 299 NVKFKEPNEDEVVRLLVEEHDFSQDRVKNALERLRKSMGKAKGSTT---LDSFF 349
>gi|452209484|ref|YP_007489598.1| Flap structure-specific endonuclease [Methanosarcina mazei Tuc01]
gi|452099386|gb|AGF96326.1| Flap structure-specific endonuclease [Methanosarcina mazei Tuc01]
Length = 338
Score = 93.6 bits (231), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 43/95 (45%), Positives = 66/95 (69%), Gaps = 1/95 (1%)
Query: 317 SRKICIDASMSLYQFLIAVRS-EGNQLMSVDGEPTSHLMGTFYRTIRLVEHGLKPIYVFD 375
+R + +DA +L+QFL +R +G+ L++ G+ TSHL G YRT LVE G+KP++VFD
Sbjct: 21 NRVVAVDAFNTLHQFLSIIRQRDGSPLVNSQGKVTSHLSGLLYRTASLVEAGIKPVFVFD 80
Query: 376 GKPPTLKSGELNKRMEKREDAQKALAKAQEQGKLK 410
GKPP +K+G LN+R E RE +++ A+ +G L+
Sbjct: 81 GKPPEMKTGTLNRRKEIRESSKEKWENAKAEGNLE 115
Score = 85.9 bits (211), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 50/156 (32%), Positives = 83/156 (53%), Gaps = 23/156 (14%)
Query: 60 KAPCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLP---------V 110
+APCE EAQ A MV A++D D+ FG+ ++R++ + RKLP +
Sbjct: 148 QAPCEGEAQAAHMVLKKDADCVASQDYDSFLFGAPTVVRNLAATGKRKLPGKNVYVDVEL 207
Query: 111 QEFHLEKVLEGMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENID 170
+ LE+ L+ + ++ ++ ID+ I +G DY + +GPK A++LIK+H +I +L
Sbjct: 208 EMIELEETLDSLGINRDQLIDIAICVGTDYNKGLEKVGPKTALKLIKKHGNIHAVLR--- 264
Query: 171 TKKYTVPEGWLYKEA----RELFRHPEVADPETIEF 202
E + EA +ELF HP+V D I++
Sbjct: 265 -------EKGMEIEALDSIKELFTHPDVTDDYEIKW 293
Score = 45.4 bits (106), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 38/72 (52%), Gaps = 14/72 (19%)
Query: 232 FIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGWLYKEA--- 288
ID+ I +G DY + +GPK A++LIK+H +I +L E + EA
Sbjct: 226 LIDIAICVGTDYNKGLEKVGPKTALKLIKKHGNIHAVLR----------EKGMEIEALDS 275
Query: 289 -RELFRHPEIAD 299
+ELF HP++ D
Sbjct: 276 IKELFTHPDVTD 287
Score = 44.7 bits (104), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 30/49 (61%), Gaps = 1/49 (2%)
Query: 3 LKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSSTTQGRLDSFF 51
+KW PD + L+ +LC + +F+EDR+ A + LKA S Q LD +F
Sbjct: 291 IKWGKPDSEKLINFLCDENDFSEDRVVKAADR-LKAASGARQQTLDQWF 338
Score = 44.3 bits (103), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 31/50 (62%), Gaps = 1/50 (2%)
Query: 408 KLKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSTTTQGRLDSFF 457
++KW PD + L+ +LC + +F+EDR+ A + LKA S Q LD +F
Sbjct: 290 EIKWGKPDSEKLINFLCDENDFSEDRVVKAADR-LKAASGARQQTLDQWF 338
>gi|21227008|ref|NP_632930.1| flap endonuclease-1 [Methanosarcina mazei Go1]
gi|28380015|sp|Q8PYF6.1|FEN_METMA RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|20905326|gb|AAM30602.1| FLAP endonuclease-1 [Methanosarcina mazei Go1]
Length = 338
Score = 93.6 bits (231), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 43/95 (45%), Positives = 66/95 (69%), Gaps = 1/95 (1%)
Query: 317 SRKICIDASMSLYQFLIAVRS-EGNQLMSVDGEPTSHLMGTFYRTIRLVEHGLKPIYVFD 375
+R + +DA +L+QFL +R +G+ L++ G+ TSHL G YRT LVE G+KP++VFD
Sbjct: 21 NRVVAVDAFNTLHQFLSIIRQRDGSPLVNSQGKVTSHLSGLLYRTASLVEAGIKPVFVFD 80
Query: 376 GKPPTLKSGELNKRMEKREDAQKALAKAQEQGKLK 410
GKPP +K+G LN+R E RE +++ A+ +G L+
Sbjct: 81 GKPPEMKTGTLNRRKEIRESSKEKWENAKAEGNLE 115
Score = 84.7 bits (208), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 49/156 (31%), Positives = 83/156 (53%), Gaps = 23/156 (14%)
Query: 60 KAPCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLP---------V 110
+APCE EAQ A MV A++D D+ FG+ ++R++ + RKLP +
Sbjct: 148 QAPCEGEAQAAHMVLKKDADCVASQDYDSFLFGAPTVVRNLAATGKRKLPGKNVYVDVEL 207
Query: 111 QEFHLEKVLEGMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENID 170
+ LE+ L+ + ++ ++ ID+ I +G DY + +GPK A++LIK+H +I ++
Sbjct: 208 EMIELEETLDSLGINRDQLIDIAICVGTDYNKGLEKVGPKTALKLIKKHGNIHAVIR--- 264
Query: 171 TKKYTVPEGWLYKEA----RELFRHPEVADPETIEF 202
E + EA +ELF HP+V D I++
Sbjct: 265 -------EKGMEIEALDSIKELFTHPDVTDDYEIKW 293
Score = 44.7 bits (104), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 30/49 (61%), Gaps = 1/49 (2%)
Query: 3 LKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSSTTQGRLDSFF 51
+KW PD + L+ +LC + +F+EDR+ A + LKA S Q LD +F
Sbjct: 291 IKWGKPDSEKLINFLCDENDFSEDRVVKAADR-LKAASGARQQTLDQWF 338
Score = 44.7 bits (104), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 38/72 (52%), Gaps = 14/72 (19%)
Query: 232 FIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGWLYKEA--- 288
ID+ I +G DY + +GPK A++LIK+H +I ++ E + EA
Sbjct: 226 LIDIAICVGTDYNKGLEKVGPKTALKLIKKHGNIHAVIR----------EKGMEIEALDS 275
Query: 289 -RELFRHPEIAD 299
+ELF HP++ D
Sbjct: 276 IKELFTHPDVTD 287
Score = 44.3 bits (103), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 31/50 (62%), Gaps = 1/50 (2%)
Query: 408 KLKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSTTTQGRLDSFF 457
++KW PD + L+ +LC + +F+EDR+ A + LKA S Q LD +F
Sbjct: 290 EIKWGKPDSEKLINFLCDENDFSEDRVVKAADR-LKAASGARQQTLDQWF 338
>gi|374327648|ref|YP_005085848.1| flap endonuclease-1 [Pyrobaculum sp. 1860]
gi|356642917|gb|AET33596.1| flap endonuclease-1 [Pyrobaculum sp. 1860]
Length = 346
Score = 93.6 bits (231), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 44/90 (48%), Positives = 61/90 (67%), Gaps = 1/90 (1%)
Query: 320 ICIDASMSLYQFLIAVR-SEGNQLMSVDGEPTSHLMGTFYRTIRLVEHGLKPIYVFDGKP 378
+ +DA +LYQFL ++R +G LM +G TSHL G FYRTI L+E G+KP+YVFDGKP
Sbjct: 28 VSLDAYNALYQFLASIRQPDGTPLMDREGRITSHLSGLFYRTINLLESGIKPVYVFDGKP 87
Query: 379 PTLKSGELNKRMEKREDAQKALAKAQEQGK 408
P K E+ R + RE A + + KA ++G+
Sbjct: 88 PEFKLAEIESRRKTREKAMEEVVKALKEGR 117
Score = 90.1 bits (222), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 59/151 (39%), Positives = 84/151 (55%), Gaps = 12/151 (7%)
Query: 60 KAPCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARK-------LPVQE 112
+AP E EAQ A MV G +A ++D DAL FGS L+R++ S R+ L +
Sbjct: 152 QAPSEGEAQAAYMVVKGHCWAVGSQDYDALLFGSPRLVRNLAVSPKRRVGEEVVELAPEI 211
Query: 113 FHLEKVLEGMEL-SHEEFIDLCILLGCDYC-DSIRGIGPKRAIELIKEHRSIEKILENID 170
L+ VL+ + L + E+ IDL ILLG DY D + G+GP++A++LI E S+EK+L+ +
Sbjct: 212 IELDAVLKALRLKNREQLIDLAILLGTDYNPDGVPGMGPQKALKLIWEFGSLEKMLDTV- 270
Query: 171 TKKYTVPEGWLYKEARELFRHPEVADPETIE 201
K P L E + F P V D T E
Sbjct: 271 LKGVHFPVNPL--EIKRFFLQPPVTDEYTTE 299
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 43/75 (57%), Gaps = 4/75 (5%)
Query: 232 FIDLCILLGCDYC-DSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGWLYKEARE 290
IDL ILLG DY D + G+GP++A++LI E S+EK+L+ + K P L E +
Sbjct: 229 LIDLAILLGTDYNPDGVPGMGPQKALKLIWEFGSLEKMLDTV-LKGVHFPVNPL--EIKR 285
Query: 291 LFRHPEIADPETIEL 305
F P + D T E+
Sbjct: 286 FFLQPPVTDEYTTEV 300
>gi|77640971|ref|NP_146975.2| flap endonuclease-1 [Aeropyrum pernix K1]
gi|150421551|sp|Q9YFY5.3|FEN_AERPE RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|116062210|dbj|BAA79026.2| flap structure-specific endonuclease [Aeropyrum pernix K1]
Length = 350
Score = 93.6 bits (231), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 44/92 (47%), Positives = 64/92 (69%), Gaps = 1/92 (1%)
Query: 320 ICIDASMSLYQFLIAVR-SEGNQLMSVDGEPTSHLMGTFYRTIRLVEHGLKPIYVFDGKP 378
+ +DA LYQFL A+R +G L+ +G TSHL G FYRTI LVE G+KP+YVFDGKP
Sbjct: 27 LALDAYNMLYQFLTAIRQPDGTPLLDREGRVTSHLSGLFYRTINLVEEGIKPVYVFDGKP 86
Query: 379 PTLKSGELNKRMEKREDAQKALAKAQEQGKLK 410
P +KS E+ +R+ ++ +A+ +A E G+++
Sbjct: 87 PEMKSREVEERLRRKAEAEARYRRAVEAGEVE 118
Score = 89.7 bits (221), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 54/153 (35%), Positives = 83/153 (54%), Gaps = 13/153 (8%)
Query: 60 KAPCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQE------- 112
+AP E EAQ A M + G +AT ++D D+L FGS L+R++ + RKLP ++
Sbjct: 151 QAPAEGEAQAAYMARKGDAWATGSQDYDSLLFGSPRLVRNLAITGRRKLPGRDQYVEIKP 210
Query: 113 --FHLEKVLEGMELSHEEFIDLCILLGCDY-CDSIRGIGPKRAIELIKEHRSIEKILENI 169
LE +L + ++ E+ I + ILLG DY +RG GPK A+ L+K K+L ++
Sbjct: 211 EIIELEPLLSKLGITREQLIAVGILLGTDYNPGGVRGYGPKTALRLVKSLGDPMKVLASV 270
Query: 170 DTKKYTVPEGWLYKEARELFRHPEVADPETIEF 202
+Y P+ ++ E F +P V D IEF
Sbjct: 271 PRGEYD-PD--YLRKVYEYFLNPPVTDDYKIEF 300
>gi|193084394|gb|ACF10047.1| XPG I flap structure-specific endonuclease [uncultured marine
crenarchaeote SAT1000-21-C11]
Length = 341
Score = 93.6 bits (231), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 59/182 (32%), Positives = 95/182 (52%), Gaps = 27/182 (14%)
Query: 60 KAPCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLE--- 116
+A + EA A M K GK YA A++D D++ FG+ L+R+ T S RK+P + +++
Sbjct: 148 QAKADGEATAAHMNKTGKAYAVASQDYDSILFGATKLVRNFTNSGRRKIPNRNTYIDVEP 207
Query: 117 ------KVLEGMELSHEEFIDLCILLGCDYC-DSIRGIGPKRAIELIKEHRSIEKI---- 165
K L+ + ++ E+ ID+ IL+G D+ D IGPK A+++IKE+ +E I
Sbjct: 208 EMISHQKSLDALGITGEQIIDIGILVGTDFNPDGFERIGPKTALKMIKEYGKLEDIPKIQ 267
Query: 166 --LENIDTKKYTVPEGWLYKEARELFRHPEVADPETIEFIDLCILLGCDYCDSIRGIGPK 223
L+ ID YK+ R++F P++ D + IEF D DY + R +
Sbjct: 268 EELKQID-----------YKQIRKIFLQPDMPDIDKIEFKDTDYSGIVDYLANERSFSEE 316
Query: 224 RA 225
R
Sbjct: 317 RV 318
Score = 81.6 bits (200), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 40/92 (43%), Positives = 56/92 (60%), Gaps = 1/92 (1%)
Query: 317 SRKICIDASMSLYQFLIAVRS-EGNQLMSVDGEPTSHLMGTFYRTIRLVEHGLKPIYVFD 375
S+ I IDA ++YQFL +R EG L G TSHL G YR + + G+KP+YVFD
Sbjct: 21 SKIIAIDAYNAIYQFLAIIRGPEGLHLTDNRGRVTSHLTGLLYRNVNFLSIGIKPVYVFD 80
Query: 376 GKPPTLKSGELNKRMEKREDAQKALAKAQEQG 407
GKPP+LK+ E+ +R +++A KA+ G
Sbjct: 81 GKPPSLKTAEIQRRKLGKKEATIKYEKAKASG 112
Score = 45.1 bits (105), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 43/81 (53%), Gaps = 18/81 (22%)
Query: 232 FIDLCILLGCDYC-DSIRGIGPKRAIELIKEHRSIEKI------LENIDTKKYTVPEGWL 284
ID+ IL+G D+ D IGPK A+++IKE+ +E I L+ ID
Sbjct: 226 IIDIGILVGTDFNPDGFERIGPKTALKMIKEYGKLEDIPKIQEELKQID----------- 274
Query: 285 YKEARELFRHPEIADPETIEL 305
YK+ R++F P++ D + IE
Sbjct: 275 YKQIRKIFLQPDMPDIDKIEF 295
>gi|448343822|ref|ZP_21532739.1| flap endonuclease-1 [Natrinema gari JCM 14663]
gi|445621905|gb|ELY75370.1| flap endonuclease-1 [Natrinema gari JCM 14663]
Length = 325
Score = 93.2 bits (230), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 56/137 (40%), Positives = 73/137 (53%), Gaps = 10/137 (7%)
Query: 60 KAPCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVL 119
+AP E EAQ A MVK G +ED DAL FGS + LR +T A +L LE L
Sbjct: 149 EAPAEGEAQAAHMVKRGDADYVGSEDYDALLFGSPLTLRQLTSKGAPEL----MDLEATL 204
Query: 120 EGMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEG 179
+L+ E+ ID IL+G D+ + + GIGPK AI I EH + +LE + V G
Sbjct: 205 AHHDLTLEQLIDAAILIGTDFNEGVSGIGPKTAIAAITEHGDLWSVLE---ARGVHVEYG 261
Query: 180 WLYKEARELFRHPEVAD 196
R+LFR P+V D
Sbjct: 262 ---DRVRQLFRDPDVTD 275
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 46/90 (51%), Gaps = 2/90 (2%)
Query: 320 ICIDASMSLYQFLIAVR--SEGNQLMSVDGEPTSHLMGTFYRTIRLVEHGLKPIYVFDGK 377
+ +DA LY++L ++ + + DG ++L+G + EH + P+ VFDG
Sbjct: 24 VAVDAHNWLYRYLTTTVKWTDSDTYTTADGTEVANLVGIVQGLPKFFEHDITPVMVFDGG 83
Query: 378 PPTLKSGELNKRMEKREDAQKALAKAQEQG 407
P LK E+ R E+R + L A+E+G
Sbjct: 84 PSELKHDEIESRREQRRSYEAQLETAREEG 113
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 39/80 (48%), Gaps = 6/80 (7%)
Query: 229 LYSFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGWLYKEA 288
L ID IL+G D+ + + GIGPK AI I EH + +LE + V G
Sbjct: 211 LEQLIDAAILIGTDFNEGVSGIGPKTAIAAITEHGDLWSVLE---ARGVHVEYG---DRV 264
Query: 289 RELFRHPEIADPETIELVAD 308
R+LFR P++ D E D
Sbjct: 265 RQLFRDPDVTDDYEFESTVD 284
>gi|397774993|ref|YP_006542539.1| flap structure-specific endonuclease [Natrinema sp. J7-2]
gi|397684086|gb|AFO58463.1| flap structure-specific endonuclease [Natrinema sp. J7-2]
Length = 325
Score = 93.2 bits (230), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 56/137 (40%), Positives = 73/137 (53%), Gaps = 10/137 (7%)
Query: 60 KAPCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVL 119
+AP E EAQ A MVK G +ED DAL FGS + LR +T A +L LE L
Sbjct: 149 EAPAEGEAQAAHMVKRGDADYVGSEDYDALLFGSPLTLRQLTSKGAPEL----MDLEATL 204
Query: 120 EGMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEG 179
+L+ E+ ID IL+G D+ + + GIGPK AI I EH + +LE + V G
Sbjct: 205 AHHDLTLEQLIDAAILIGTDFNEGVSGIGPKTAIAAITEHGDLWSVLE---ARGVHVEYG 261
Query: 180 WLYKEARELFRHPEVAD 196
R+LFR P+V D
Sbjct: 262 ---DRVRQLFRDPDVTD 275
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 46/90 (51%), Gaps = 2/90 (2%)
Query: 320 ICIDASMSLYQFLIAV--RSEGNQLMSVDGEPTSHLMGTFYRTIRLVEHGLKPIYVFDGK 377
+ +DA LY++L ++ + + DG ++L+G + EH + P+ VFDG
Sbjct: 24 VAVDAHNWLYRYLTTTVKWTDSDTYTTADGTEVANLVGIVQGLPKFFEHDITPVMVFDGG 83
Query: 378 PPTLKSGELNKRMEKREDAQKALAKAQEQG 407
P LK E+ R E+R + L A+E+G
Sbjct: 84 PSELKHDEIESRREQRRSYEAQLETAREEG 113
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 39/80 (48%), Gaps = 6/80 (7%)
Query: 229 LYSFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGWLYKEA 288
L ID IL+G D+ + + GIGPK AI I EH + +LE + V G
Sbjct: 211 LEQLIDAAILIGTDFNEGVSGIGPKTAIAAITEHGDLWSVLE---ARGVHVEYG---DRV 264
Query: 289 RELFRHPEIADPETIELVAD 308
R+LFR P++ D E D
Sbjct: 265 RQLFRDPDVTDDYEFESTVD 284
>gi|255513611|gb|EET89877.1| XPG I domain protein [Candidatus Micrarchaeum acidiphilum ARMAN-2]
Length = 352
Score = 93.2 bits (230), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 51/146 (34%), Positives = 80/146 (54%), Gaps = 10/146 (6%)
Query: 60 KAPCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFH----- 114
AP E EAQ + M G YA A++D D L FGS ++R++T S RKLP +
Sbjct: 151 NAPSEGEAQASYMCSKGIAYAAASQDYDTLLFGSKKVVRNLTLSGRRKLPGKNVFVNVNP 210
Query: 115 ----LEKVLEGMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENID 170
L+ L + ++ ++ I + ILLG D+ D ++G+GPK A++ +K SI I+E
Sbjct: 211 EMVDLDATLGSLGITRQKLIWIGILLGTDFNDGVKGVGPKTALKAVKSSNSITDIIE-FA 269
Query: 171 TKKYTVPEGWLYKEARELFRHPEVAD 196
+K+ K+ +LF HPEV++
Sbjct: 270 KQKFNYEFEVDPKDVEDLFMHPEVSE 295
Score = 76.3 bits (186), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 42/115 (36%), Positives = 65/115 (56%), Gaps = 9/115 (7%)
Query: 303 IELVADVAPSSIRE--------SRKICIDASMSLYQFLIAVRS-EGNQLMSVDGEPTSHL 353
+++ D++ ++RE + + +DA LYQFL +R +G+ L G TSHL
Sbjct: 2 VQMSVDLSKLAVREQLDIGSLSGKVVAVDAYNVLYQFLSIIRQPDGSLLCDEKGNVTSHL 61
Query: 354 MGTFYRTIRLVEHGLKPIYVFDGKPPTLKSGELNKRMEKREDAQKALAKAQEQGK 408
G FYR+I L+ G+ +YVFDG P TLK + R+ +RE A +A KA +G+
Sbjct: 62 SGLFYRSIDLIAKGVNLVYVFDGMPSTLKKKTIEARISRREKAYEAWQKAVAEGQ 116
Score = 52.0 bits (123), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 45/81 (55%), Gaps = 1/81 (1%)
Query: 232 FIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGWLYKEAREL 291
I + ILLG D+ D ++G+GPK A++ +K SI I+E +K+ K+ +L
Sbjct: 229 LIWIGILLGTDFNDGVKGVGPKTALKAVKSSNSITDIIE-FAKQKFNYEFEVDPKDVEDL 287
Query: 292 FRHPEIADPETIELVADVAPS 312
F HPE+++ EL V+ S
Sbjct: 288 FMHPEVSEITEAELGKGVSKS 308
>gi|315230863|ref|YP_004071299.1| flap structure-specific endonuclease [Thermococcus barophilus MP]
gi|315183891|gb|ADT84076.1| flap structure-specific endonuclease [Thermococcus barophilus MP]
Length = 342
Score = 93.2 bits (230), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 52/148 (35%), Positives = 88/148 (59%), Gaps = 20/148 (13%)
Query: 60 KAPCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFH----- 114
+AP E EAQ A M GKV+A+A++D D+L FG+ L+R++T + RKLP ++ +
Sbjct: 148 QAPSEGEAQAAYMASKGKVWASASQDYDSLLFGAPRLVRNLTITGRRKLPGKDVYVEVKP 207
Query: 115 ----LEKVLEGMELSHEEFIDLCILLGCDYC-DSIRGIGPKRAIELIKEHRS-IEKILEN 168
LE+VL+ +++ E+ I+L IL+G DY I+G+GPK+A+E+++ + ++K +
Sbjct: 208 ELIVLEEVLKELKIDREKLIELAILVGTDYNPGGIKGVGPKKALEIVRYSKDPLKKYQKM 267
Query: 169 IDTKKYTVPEGWLYKEARELFRHPEVAD 196
D Y + +E F +P V D
Sbjct: 268 SDVDLYAI---------KEFFLNPPVTD 286
Score = 84.0 bits (206), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 41/71 (57%), Positives = 47/71 (66%), Gaps = 1/71 (1%)
Query: 317 SRKICIDASMSLYQFLIAVRS-EGNQLMSVDGEPTSHLMGTFYRTIRLVEHGLKPIYVFD 375
RKI IDA ++YQFL +R +G LM G TSHL G FYRTI L+E G+KP YVFD
Sbjct: 21 GRKIAIDALNAIYQFLSIIRQRDGTPLMDSKGRITSHLSGLFYRTINLMEAGIKPAYVFD 80
Query: 376 GKPPTLKSGEL 386
GKPP K EL
Sbjct: 81 GKPPEFKKKEL 91
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 22/50 (44%), Positives = 36/50 (72%)
Query: 408 KLKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSTTTQGRLDSFF 457
KL W PDE+G++K+LC + +F+E+R++NG ++L KA Q L+S+F
Sbjct: 289 KLVWKMPDEEGILKFLCDEHDFSEERVKNGLERLKKAIRAGKQSTLESWF 338
Score = 52.0 bits (123), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 21/49 (42%), Positives = 36/49 (73%)
Query: 3 LKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSSTTQGRLDSFF 51
L W PDE+G++K+LC + +F+E+R++NG ++L KA + Q L+S+F
Sbjct: 290 LVWKMPDEEGILKFLCDEHDFSEERVKNGLERLKKAIRAGKQSTLESWF 338
>gi|41614884|ref|NP_963382.1| flap endonuclease-1 [Nanoarchaeum equitans Kin4-M]
gi|48427872|sp|P61942.1|FEN_NANEQ RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|40068608|gb|AAR38943.1| NEQ088 [Nanoarchaeum equitans Kin4-M]
Length = 339
Score = 93.2 bits (230), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 62/180 (34%), Positives = 93/180 (51%), Gaps = 31/180 (17%)
Query: 39 RSSTTQGRLDSFFTIRREEKRK-----------APCEAEAQCAAMVKAGKVYATATEDMD 87
+ + + G+LDS+ EE +K AP E EA+ A + K G ++D D
Sbjct: 120 KYAKSLGKLDSYMV---EEAKKLLEAMGIPYVQAPSEGEAEAAYLTKKGVSDYCGSQDYD 176
Query: 88 ALTFGSNILLRHMTFSEARKLPVQEFH---------LEKVLEGMELSHEEFIDLCILLGC 138
+L FGS ++R++T SE RKLP + + LE VL +++ E+ I + +LLG
Sbjct: 177 SLLFGSPRVVRNITISEKRKLPGKNIYVEVKPEVIELEAVLNYWKITREQLIAIAMLLGT 236
Query: 139 DYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGWLYKEARELFRHPEVADPE 198
DY + + GIGPK AIE++K K++E Y +P G KE E F +P V D E
Sbjct: 237 DYNEKVPGIGPKTAIEIVKRFGDPIKVIEY-----YKIPNG---KEIFEFFLNPPVIDFE 288
Score = 87.8 bits (216), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 42/91 (46%), Positives = 57/91 (62%)
Query: 320 ICIDASMSLYQFLIAVRSEGNQLMSVDGEPTSHLMGTFYRTIRLVEHGLKPIYVFDGKPP 379
I IDA +LYQFL ++R +G L G TSHL G FYRTI L+E+G+KPIYVFDG PP
Sbjct: 26 IAIDAFNALYQFLFSIRQDGEPLRDSKGRITSHLSGLFYRTINLLEYGIKPIYVFDGTPP 85
Query: 380 TLKSGELNKRMEKREDAQKALAKAQEQGKLK 410
K KR + +E + +A ++G ++
Sbjct: 86 KFKIVAWEKRKKHKEQLESKYKEALKKGNIQ 116
Score = 48.5 bits (114), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 27/70 (38%), Positives = 38/70 (54%), Gaps = 8/70 (11%)
Query: 232 FIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGWLYKEAREL 291
I + +LLG DY + + GIGPK AIE++K K++E Y +P G KE E
Sbjct: 227 LIAIAMLLGTDYNEKVPGIGPKTAIEIVKRFGDPIKVIEY-----YKIPNG---KEIFEF 278
Query: 292 FRHPEIADPE 301
F +P + D E
Sbjct: 279 FLNPPVIDFE 288
Score = 40.4 bits (93), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 43/81 (53%), Gaps = 15/81 (18%)
Query: 164 KILENID-TKKYTVPEGWLYKEARELFRHPEVADPETI---------EFIDLCILLGCDY 213
+++ NI ++K +P +Y E + PEV + E + + I + +LLG DY
Sbjct: 184 RVVRNITISEKRKLPGKNIYVEVK-----PEVIELEAVLNYWKITREQLIAIAMLLGTDY 238
Query: 214 CDSIRGIGPKRAIELLYSFID 234
+ + GIGPK AIE++ F D
Sbjct: 239 NEKVPGIGPKTAIEIVKRFGD 259
>gi|435846409|ref|YP_007308659.1| flap endonuclease 1 [Natronococcus occultus SP4]
gi|433672677|gb|AGB36869.1| flap endonuclease 1 [Natronococcus occultus SP4]
Length = 325
Score = 92.4 bits (228), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 56/138 (40%), Positives = 74/138 (53%), Gaps = 12/138 (8%)
Query: 60 KAPCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVL 119
+AP E EAQ A +VK G +ED DAL FG+ + LR +T +L LE L
Sbjct: 149 EAPAEGEAQAAHIVKRGDADYVGSEDYDALLFGAPLTLRQLTSKGDPEL----MDLEATL 204
Query: 120 EGMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILE-NIDTKKYTVPE 178
E EL+ E+ ID IL+G D+ + + GIGPK AI I EH + +LE DT +Y
Sbjct: 205 ERHELTLEQLIDAAILIGTDFNEGVSGIGPKTAISEITEHGDLWSVLEARGDTVEYG--- 261
Query: 179 GWLYKEARELFRHPEVAD 196
R+LFR P+V D
Sbjct: 262 ----DRVRQLFRDPDVTD 275
Score = 56.2 bits (134), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 33/107 (30%), Positives = 54/107 (50%), Gaps = 4/107 (3%)
Query: 303 IELVADVAPSSIRESRKICIDASMSLYQFLIAV--RSEGNQLMSVDGEPTSHLMGTFYRT 360
I ++ DV I + I +DA LY++L + + + DG ++L+G
Sbjct: 9 IAVIEDVPFDEIEGT--IAVDAHNWLYRYLTTTVKWTASEKYTTGDGTEVANLIGIVQGV 66
Query: 361 IRLVEHGLKPIYVFDGKPPTLKSGELNKRMEKREDAQKALAKAQEQG 407
R EH + P+ VFDG P LK+ E+ R E+R ++ L A+E+G
Sbjct: 67 ARFFEHDVTPVMVFDGGPSQLKADEIESRREQRRSYEEQLETAREEG 113
Score = 52.0 bits (123), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 28/72 (38%), Positives = 38/72 (52%), Gaps = 8/72 (11%)
Query: 229 LYSFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILE-NIDTKKYTVPEGWLYKE 287
L ID IL+G D+ + + GIGPK AI I EH + +LE DT +Y
Sbjct: 211 LEQLIDAAILIGTDFNEGVSGIGPKTAISEITEHGDLWSVLEARGDTVEYG-------DR 263
Query: 288 ARELFRHPEIAD 299
R+LFR P++ D
Sbjct: 264 VRQLFRDPDVTD 275
>gi|410670767|ref|YP_006923138.1| flap endonuclease-1 [Methanolobus psychrophilus R15]
gi|409169895|gb|AFV23770.1| flap endonuclease-1 [Methanolobus psychrophilus R15]
Length = 338
Score = 92.4 bits (228), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 51/144 (35%), Positives = 81/144 (56%), Gaps = 15/144 (10%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFH------ 114
AP E EAQ A MV ++D D+L FG+ ++R++T S RKLP + +
Sbjct: 149 APSEGEAQAAYMVIKRDADYAGSQDYDSLLFGAPRVVRNLTVSGKRKLPKKNLYVDVKPE 208
Query: 115 ---LEKVLEGMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDT 171
LE+ L G++++ E+ ID+ + +G DY I IGPK+A++L+KEH SIEKIL +
Sbjct: 209 VMELEETLLGLDVTREQLIDIALCVGTDYNQGITNIGPKKALKLVKEHGSIEKILASTGN 268
Query: 172 KKYTVPEGWLYKEARELFRHPEVA 195
+ +P+ ++ F +P V
Sbjct: 269 E---IPD---LGNIKDFFMNPPVT 286
Score = 89.0 bits (219), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 44/92 (47%), Positives = 60/92 (65%), Gaps = 1/92 (1%)
Query: 317 SRKICIDASMSLYQFLIAVR-SEGNQLMSVDGEPTSHLMGTFYRTIRLVEHGLKPIYVFD 375
S+ I IDA +LYQFL +R +G L G TSHL G YR L+E G++P++VFD
Sbjct: 21 SKVIAIDAYNTLYQFLSIIRQKDGTPLKDSKGNITSHLSGLLYRMSSLMEAGIRPVFVFD 80
Query: 376 GKPPTLKSGELNKRMEKREDAQKALAKAQEQG 407
GKPP +KS + KR++ RE+AQ +AQE+G
Sbjct: 81 GKPPQMKSPTIEKRVQARENAQMKWEQAQEEG 112
Score = 50.1 bits (118), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 39/67 (58%), Gaps = 6/67 (8%)
Query: 232 FIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGWLYKEAREL 291
ID+ + +G DY I IGPK+A++L+KEH SIEKIL + + +P+ ++
Sbjct: 226 LIDIALCVGTDYNQGITNIGPKKALKLVKEHGSIEKILASTGNE---IPD---LGNIKDF 279
Query: 292 FRHPEIA 298
F +P +
Sbjct: 280 FMNPPVT 286
>gi|298708646|emb|CBJ26133.1| exonuclease, putative; 92014-93872 [Ectocarpus siliculosus]
Length = 587
Score = 92.4 bits (228), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 49/143 (34%), Positives = 81/143 (56%), Gaps = 4/143 (2%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFG-SNILLRHMTFSEARKLPVQEFHLEKVL 119
AP EA+AQ A + + G V +ED D L +G +L + +++ ++ L
Sbjct: 147 APYEADAQLAFLSRTGAVDVVLSEDSDCLPYGCKKVLFKMDNEGHGQEIQLRNLAANTPL 206
Query: 120 EGMELSHEEFIDLCILLGCDYC-DSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPE 178
+ F+DLC+L+GCDY S++G+G A +L+ HRS++KI+ I++ ++ +PE
Sbjct: 207 SLSNWKNSMFLDLCLLVGCDYIPSSVKGLGIATAYKLVDRHRSLDKIIGAINSSRFVIPE 266
Query: 179 GWL--YKEARELFRHPEVADPET 199
G+ YK AR FRH + +PET
Sbjct: 267 GYWEQYKRARLTFRHHIIYNPET 289
Score = 74.7 bits (182), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 34/74 (45%), Positives = 52/74 (70%), Gaps = 3/74 (4%)
Query: 232 FIDLCILLGCDYC-DSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGWL--YKEA 288
F+DLC+L+GCDY S++G+G A +L+ HRS++KI+ I++ ++ +PEG+ YK A
Sbjct: 216 FLDLCLLVGCDYIPSSVKGLGIATAYKLVDRHRSLDKIIGAINSSRFVIPEGYWEQYKRA 275
Query: 289 RELFRHPEIADPET 302
R FRH I +PET
Sbjct: 276 RLTFRHHIIYNPET 289
>gi|118596590|dbj|BAF37954.1| putative flap endonuclease-1 [Sulfolobus sp. M02]
Length = 304
Score = 92.4 bits (228), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 55/154 (35%), Positives = 92/154 (59%), Gaps = 13/154 (8%)
Query: 60 KAPCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLE--- 116
+AP E EA+ A + G +ATA++D D+L FG+ L+R++T + RKLP ++ ++E
Sbjct: 103 QAPSEGEAEAAYINILGLSWATASQDYDSLLFGAKRLVRNLTLTGKRKLPGKDVYVEIKP 162
Query: 117 ------KVLEGMELSHEEFIDLCILLGCDYC-DSIRGIGPKRAIELIKEHRSIEKILENI 169
+L+ + L+ E+ ID+ I++G DY D I+G G K A +IK++ S+EK +E
Sbjct: 163 ELIELDTLLKKLGLTREQLIDIGIIVGTDYNPDGIKGYGVKTAYRIIKKYGSLEKAIEKG 222
Query: 170 DTKKYTVPEGWLYKEARELFRHPEVADP-ETIEF 202
+ K V + +E R LF +P+V +P E +E
Sbjct: 223 EIPKIKV--NFNVEEIRGLFLNPQVVEPKENLEL 254
Score = 66.6 bits (161), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 36/71 (50%), Positives = 50/71 (70%)
Query: 343 MSVDGEPTSHLMGTFYRTIRLVEHGLKPIYVFDGKPPTLKSGELNKRMEKREDAQKALAK 402
M G TSHL G FYRTI ++E G+ PIYVFDGKPP K+ EL +R + +E+A+K L +
Sbjct: 1 MDSQGRVTSHLNGLFYRTISILEEGIIPIYVFDGKPPEQKAQELERRKKVKEEAEKKLEQ 60
Query: 403 AQEQGKLKWSD 413
A+ +G +K S+
Sbjct: 61 AKTEGSIKTSE 71
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 47/78 (60%), Gaps = 4/78 (5%)
Query: 232 FIDLCILLGCDYC-DSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGWLYKEARE 290
ID+ I++G DY D I+G G K A +IK++ S+EK +E + K V + +E R
Sbjct: 181 LIDIGIIVGTDYNPDGIKGYGVKTAYRIIKKYGSLEKAIEKGEIPKIKV--NFNVEEIRG 238
Query: 291 LFRHPEIADP-ETIELVA 307
LF +P++ +P E +EL A
Sbjct: 239 LFLNPQVVEPKENLELAA 256
>gi|408381751|ref|ZP_11179299.1| flap endonuclease-1 [Methanobacterium formicicum DSM 3637]
gi|407815682|gb|EKF86252.1| flap endonuclease-1 [Methanobacterium formicicum DSM 3637]
Length = 328
Score = 92.0 bits (227), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 47/135 (34%), Positives = 80/135 (59%), Gaps = 6/135 (4%)
Query: 60 KAPCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVL 119
+A E EAQ + MV G + A++D D + FG+ +++++T S +K P + L K+L
Sbjct: 148 QAKGEGEAQASYMVAQGDAWCVASQDYDCMLFGAPRMVKNLTISGTQKTP-EIIELNKIL 206
Query: 120 EGMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEG 179
E + ++ E+ +DL I++G D+ I+GIG K+ ++LIKEH I ILE +D + P
Sbjct: 207 ENLSITREQLVDLAIMVGTDFNQGIKGIGAKKGLKLIKEHGDIYHILEKLDIELDVDP-- 264
Query: 180 WLYKEARELFRHPEV 194
+ RE+F + +V
Sbjct: 265 ---RTLREMFLNHDV 276
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 51/140 (36%), Positives = 78/140 (55%), Gaps = 13/140 (9%)
Query: 309 VAPSSIR----ESRKICIDASMSLYQFLIAVRS-EGNQLMSVDGEPTSHLMGTFYRTIRL 363
V+P I+ + + + +DA+ +YQFL ++R +G L +G TSH G YRT L
Sbjct: 9 VSPEEIKFEDLDGKVVALDAANVIYQFLSSIRQIDGTPLKDQNGRITSHFSGILYRTSSL 68
Query: 364 VEHGLKPIYVFDGKPPTLKSGELNKRMEKREDAQKALAKAQEQGKLKWSDPDEDGLVKYL 423
VE G+KPIYVFDG+ LK KR E +E++++ +A E+G+L +D +
Sbjct: 69 VEKGIKPIYVFDGQSSALKKETQQKRREIKEESERRWKEALEEGRL------DDARKFAV 122
Query: 424 CGDKNFAEDRIRNGAKKLLK 443
+ F E I G+KKL+K
Sbjct: 123 RSSRMFPE--IVEGSKKLIK 140
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 39/66 (59%), Gaps = 5/66 (7%)
Query: 232 FIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGWLYKEAREL 291
+DL I++G D+ I+GIG K+ ++LIKEH I ILE +D + P + RE+
Sbjct: 216 LVDLAIMVGTDFNQGIKGIGAKKGLKLIKEHGDIYHILEKLDIELDVDP-----RTLREM 270
Query: 292 FRHPEI 297
F + ++
Sbjct: 271 FLNHDV 276
Score = 45.4 bits (106), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 33/49 (67%), Gaps = 2/49 (4%)
Query: 3 LKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSSTTQGRLDSFF 51
LKW DE+G+V +LCG+ +F+++R+ + KL K + TTQ L+ +F
Sbjct: 282 LKWQKADEEGIVNFLCGEHDFSQNRVLSAVDKLKKLQ--TTQSSLEQWF 328
Score = 45.4 bits (106), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 33/49 (67%), Gaps = 2/49 (4%)
Query: 409 LKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSTTTQGRLDSFF 457
LKW DE+G+V +LCG+ +F+++R+ + KL K + TTQ L+ +F
Sbjct: 282 LKWQKADEEGIVNFLCGEHDFSQNRVLSAVDKLKKLQ--TTQSSLEQWF 328
>gi|374723540|gb|EHR75620.1| flap endonuclease-1 [uncultured marine group II euryarchaeote]
Length = 342
Score = 92.0 bits (227), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 58/145 (40%), Positives = 81/145 (55%), Gaps = 12/145 (8%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLR----HMTFSEARKLPVQEFHLE 116
A E E Q A M G++ AT+D DAL +G+ +L+R H + R + Q+ L+
Sbjct: 153 AKAEGEGQAAVMAAKGQLDVVATQDWDALLYGTPLLVRNLMSHGSKQHGRVVQAQKIILD 212
Query: 117 KVLEGMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTV 176
+VL EL+ + IDL I++G D+ IRGIGPK ++LIK H +IE I E K+ V
Sbjct: 213 EVLSENELTRAQLIDLAIMIGTDFHPGIRGIGPKTGMKLIKAHGTIEAICE---AKEKDV 269
Query: 177 PEGWLYKEARELFR-HP--EVADPE 198
PE E R +F HP EVAD +
Sbjct: 270 PE--RLDEIRAIFHDHPANEVADAD 292
Score = 68.9 bits (167), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 35/96 (36%), Positives = 55/96 (57%), Gaps = 12/96 (12%)
Query: 296 EIADPETIELVADVAPSSIRESRKICIDASMSLYQFLIAVR-----SEGNQLMSVDGEPT 350
+I PETI+L + +++ +DA ++ +QFL +R +G L + +G+
Sbjct: 7 DITSPETIDL-------NSLAGKRVGVDAFLTAFQFLTTMRDRSPQGDGGPLRAENGKVV 59
Query: 351 SHLMGTFYRTIRLVEHGLKPIYVFDGKPPTLKSGEL 386
SHLMG RT L+ G+KP+YVFDG P LK+ E+
Sbjct: 60 SHLMGFLNRTTTLLAAGIKPVYVFDGTAPELKADEI 95
Score = 55.5 bits (132), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 36/86 (41%), Positives = 47/86 (54%), Gaps = 15/86 (17%)
Query: 232 FIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGWLYKEAREL 291
IDL I++G D+ IRGIGPK ++LIK H +IE I E K+ VPE E R +
Sbjct: 225 LIDLAIMIGTDFHPGIRGIGPKTGMKLIKAHGTIEAICE---AKEKDVPE--RLDEIRAI 279
Query: 292 FR-HP--EIADPETIELVADVAPSSI 314
F HP E+AD AD+ P +
Sbjct: 280 FHDHPANEVAD-------ADLEPGQV 298
>gi|383622569|ref|ZP_09948975.1| flap endonuclease-1 [Halobiforma lacisalsi AJ5]
gi|448694526|ref|ZP_21697026.1| flap endonuclease-1 [Halobiforma lacisalsi AJ5]
gi|445785111|gb|EMA35906.1| flap endonuclease-1 [Halobiforma lacisalsi AJ5]
Length = 325
Score = 92.0 bits (227), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 55/138 (39%), Positives = 73/138 (52%), Gaps = 12/138 (8%)
Query: 60 KAPCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVL 119
+AP E EAQ A MV+ G +ED DAL FG+ + LR +T +L LE L
Sbjct: 149 EAPAEGEAQAAHMVRHGDADYVGSEDYDALLFGAPLTLRQLTSKGNPEL----MDLEATL 204
Query: 120 EGMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILE-NIDTKKYTVPE 178
E +L+ E+ ID IL+G D+ + + GIGPK AI I EH + +LE DT +Y
Sbjct: 205 EEHDLTLEQLIDAAILIGTDFNEGVSGIGPKTAITEITEHGDLWSVLEARGDTVEYG--- 261
Query: 179 GWLYKEARELFRHPEVAD 196
R+LFR P V D
Sbjct: 262 ----DRVRQLFRDPNVTD 275
Score = 51.6 bits (122), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/89 (35%), Positives = 42/89 (47%), Gaps = 8/89 (8%)
Query: 229 LYSFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILE-NIDTKKYTVPEGWLYKE 287
L ID IL+G D+ + + GIGPK AI I EH + +LE DT +Y
Sbjct: 211 LEQLIDAAILIGTDFNEGVSGIGPKTAITEITEHGDLWSVLEARGDTVEYG-------DR 263
Query: 288 ARELFRHPEIADPETIELVADVAPSSIRE 316
R+LFR P + D E D + RE
Sbjct: 264 VRQLFRDPNVTDDYEFETTLDPDLEAARE 292
Score = 51.6 bits (122), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 47/90 (52%), Gaps = 2/90 (2%)
Query: 320 ICIDASMSLYQFLIAVRSEGNQLM--SVDGEPTSHLMGTFYRTIRLVEHGLKPIYVFDGK 377
+ +DA LY++L N + + DG ++L+G + E+ + P+ VFDG
Sbjct: 24 VAVDAHNWLYRYLTTTVKWTNSDIYTTADGTEVANLVGIVQGLPKFFENDVTPVMVFDGG 83
Query: 378 PPTLKSGELNKRMEKREDAQKALAKAQEQG 407
P LK+ E+ R E+R ++ L A+E+G
Sbjct: 84 PSELKADEIESRREQRRSYEEQLETAREEG 113
>gi|119872195|ref|YP_930202.1| flap endonuclease-1 [Pyrobaculum islandicum DSM 4184]
gi|166973706|sp|A1RSC7.1|FEN_PYRIL RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|119673603|gb|ABL87859.1| flap endonuclease 1 [Pyrobaculum islandicum DSM 4184]
Length = 346
Score = 91.7 bits (226), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 53/124 (42%), Positives = 75/124 (60%), Gaps = 9/124 (7%)
Query: 320 ICIDASMSLYQFLIAVR-SEGNQLMSVDGEPTSHLMGTFYRTIRLVEHGLKPIYVFDGKP 378
I +DA SLYQFL ++R +G LM G TSHL G FYRTI L+E G+KP+YVFDGKP
Sbjct: 28 IALDAYNSLYQFLASIRQPDGTPLMDRVGRITSHLSGLFYRTINLMEAGIKPVYVFDGKP 87
Query: 379 PTLKSGELNKRMEKREDAQKALAKAQEQGKLKWSDPDEDGLVKYLCGDKNFAEDRIRNGA 438
P K E+ +R + +E A + + KA ++G+ ++ + KY+ D + + A
Sbjct: 88 PEFKLAEIEERRKVKEKAMEEVLKAIKEGR-------KEDVAKYMKRAVFLTSDMVED-A 139
Query: 439 KKLL 442
KKLL
Sbjct: 140 KKLL 143
Score = 89.0 bits (219), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 59/165 (35%), Positives = 89/165 (53%), Gaps = 20/165 (12%)
Query: 60 KAPCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARK-------LPVQE 112
+AP E EAQ A M K G +A ++D D+L FGS L+R++ S RK L +
Sbjct: 152 QAPSEGEAQAAHMAKRGHCWAVGSQDYDSLLFGSPRLVRNLAVSPRRKIGEEVIELSPEI 211
Query: 113 FHLEKVLEGMELSH-EEFIDLCILLGCDYC-DSIRGIGPKRAIELIKEHRSIEKILENID 170
L+ VL+ + L + E+ IDL ILLG DY D + G+GP++A++L+ E +EK+LE +
Sbjct: 212 IELDAVLKSLRLKNREQLIDLAILLGTDYNPDGVPGVGPQKALKLVWEFGGLEKMLETVL 271
Query: 171 TKKYTVPEGWLYKEARELFRHPEVAD--------PETIEFIDLCI 207
Y P L E ++ F +P V D P+ + ID +
Sbjct: 272 RGVY-FPVDPL--EIKKFFLNPPVTDEYSTDIKKPDEQKLIDFLV 313
Score = 47.8 bits (112), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 41/69 (59%), Gaps = 4/69 (5%)
Query: 232 FIDLCILLGCDYC-DSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGWLYKEARE 290
IDL ILLG DY D + G+GP++A++L+ E +EK+LE + Y P L E ++
Sbjct: 229 LIDLAILLGTDYNPDGVPGVGPQKALKLVWEFGGLEKMLETVLRGVY-FPVDPL--EIKK 285
Query: 291 LFRHPEIAD 299
F +P + D
Sbjct: 286 FFLNPPVTD 294
>gi|337283806|ref|YP_004623280.1| flap endonuclease-1 [Pyrococcus yayanosii CH1]
gi|334899740|gb|AEH24008.1| flap endonuclease-1 [Pyrococcus yayanosii CH1]
Length = 341
Score = 91.7 bits (226), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 51/148 (34%), Positives = 86/148 (58%), Gaps = 20/148 (13%)
Query: 60 KAPCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFH----- 114
+AP E EAQ A + G VYA+A++D D+L FG+ L+R++T + RKLP ++ +
Sbjct: 148 QAPSEGEAQAAYIAAKGAVYASASQDYDSLLFGAPRLVRNLTITGKRKLPGKDVYVDVKP 207
Query: 115 ----LEKVLEGMELSHEEFIDLCILLGCDYC-DSIRGIGPKRAIELIKEHR-SIEKILEN 168
LE+VL+ +++ E+ I+L IL+G DY ++GIGPK+A+E+++ + + K +
Sbjct: 208 ELIVLEEVLKALKIDREKLIELAILVGTDYNPGGVKGIGPKKALEIVRHSKDPLAKWQKV 267
Query: 169 IDTKKYTVPEGWLYKEARELFRHPEVAD 196
D Y + +E F +P V D
Sbjct: 268 SDVDLYAI---------KEFFLNPPVTD 286
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 37/67 (55%), Positives = 45/67 (67%), Gaps = 1/67 (1%)
Query: 317 SRKICIDASMSLYQFLIAVRS-EGNQLMSVDGEPTSHLMGTFYRTIRLVEHGLKPIYVFD 375
+K+ IDA ++YQFL +R +G LM G TSHL G FYRTI L+E G+KP YVFD
Sbjct: 21 GKKVAIDALNAIYQFLSTIRQRDGTPLMDSKGRITSHLSGLFYRTINLMEAGIKPAYVFD 80
Query: 376 GKPPTLK 382
GKPP K
Sbjct: 81 GKPPAFK 87
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 21/49 (42%), Positives = 37/49 (75%)
Query: 3 LKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSSTTQGRLDSFF 51
LKW +PDE+G++K+LC + +F+E+R++NG ++L A + Q L+S+F
Sbjct: 290 LKWKEPDEEGILKFLCDEHDFSEERVKNGIERLKTAVKAGKQVTLESWF 338
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 21/49 (42%), Positives = 36/49 (73%)
Query: 409 LKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSTTTQGRLDSFF 457
LKW +PDE+G++K+LC + +F+E+R++NG ++L A Q L+S+F
Sbjct: 290 LKWKEPDEEGILKFLCDEHDFSEERVKNGIERLKTAVKAGKQVTLESWF 338
>gi|345005776|ref|YP_004808629.1| Flap structure-specific endonuclease [halophilic archaeon DL31]
gi|344321402|gb|AEN06256.1| Flap structure-specific endonuclease [halophilic archaeon DL31]
Length = 326
Score = 91.7 bits (226), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 57/170 (33%), Positives = 84/170 (49%), Gaps = 14/170 (8%)
Query: 27 RIRNGAKKLLKARSSTTQGRLDSFFTIRREEKRKAPCEAEAQCAAMVKAGKVYATATEDM 86
R+ ++L TT+G LD E AP E EAQCA M G+V +ED
Sbjct: 121 RLEARTQRLTDTIHETTRGLLDRLDVPYIE----APAEGEAQCAHMAATGEVDYAGSEDY 176
Query: 87 DALTFGSNILLRHMTFSEARKLPVQEFHLEKVLEGMELSHEEFIDLCILLGCDYCDSIRG 146
D +TFG+ LR +T +L L+K LE ++S+E+ +D+ +L+G D+ + + G
Sbjct: 177 DTMTFGAPRTLRQLTSKGHPEL----MDLQKTLEKHDISYEQLVDVALLMGTDFNEGVTG 232
Query: 147 IGPKRAIELIKEHRSIEKILENIDTKKYTVPEGWLYKEARELFRHPEVAD 196
GPK A++ +KEH I ++E D RELF P V D
Sbjct: 233 YGPKTAVKAVKEHGDIWGVMEAEDVYVANA------DRVRELFFDPPVTD 276
Score = 50.1 bits (118), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 32/112 (28%), Positives = 58/112 (51%), Gaps = 3/112 (2%)
Query: 298 ADPETIELVADVAPSSIRESRKICIDASMSLYQFLIA-VRSEGNQLMSV-DGEPTSHLMG 355
AD + + D+ P S + +DA LY++L V+ + + + DG+ ++L+G
Sbjct: 4 ADLRAVAAIEDI-PFSELSGSVVAVDAHNWLYRYLTTTVKFTADSVYTTSDGDEVANLLG 62
Query: 356 TFYRTIRLVEHGLKPIYVFDGKPPTLKSGELNKRMEKREDAQKALAKAQEQG 407
+ E + P+ VFDG LKS E+ +R E+R+ A++ +A+E G
Sbjct: 63 VVQGLPKFFEADMTPVLVFDGGVTDLKSDEVERRREQRKKAEERKQEAEEAG 114
Score = 46.6 bits (109), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 34/68 (50%), Gaps = 6/68 (8%)
Query: 232 FIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGWLYKEAREL 291
+D+ +L+G D+ + + G GPK A++ +KEH I ++E D REL
Sbjct: 215 LVDVALLMGTDFNEGVTGYGPKTAVKAVKEHGDIWGVMEAEDVYVANA------DRVREL 268
Query: 292 FRHPEIAD 299
F P + D
Sbjct: 269 FFDPPVTD 276
>gi|409095300|ref|ZP_11215324.1| flap endonuclease-1 [Thermococcus zilligii AN1]
Length = 340
Score = 91.7 bits (226), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 54/148 (36%), Positives = 84/148 (56%), Gaps = 20/148 (13%)
Query: 60 KAPCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFH----- 114
+AP E EAQ A M GKVYA+A++D D+L FG+ L+R++T + RKLP +E +
Sbjct: 148 QAPSEGEAQAAYMAAKGKVYASASQDYDSLLFGAPKLVRNLTITGRRKLPGKEVYVEVKP 207
Query: 115 ----LEKVLEGMELSHEEFIDLCILLGCDYC-DSIRGIGPKRAIELIKE-HRSIEKILEN 168
LE+VL+ + + E+ I+L IL+G DY I+GIGPK+A+ ++K + + K
Sbjct: 208 ELIVLEEVLKELGIDREKLIELAILVGTDYNPGGIKGIGPKKALMIVKRINDPLRKYSNE 267
Query: 169 IDTKKYTVPEGWLYKEARELFRHPEVAD 196
+ Y + +E F +P V D
Sbjct: 268 SEVDLYAI---------KEFFLNPPVTD 286
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 35/64 (54%), Positives = 44/64 (68%), Gaps = 1/64 (1%)
Query: 317 SRKICIDASMSLYQFLIAVR-SEGNQLMSVDGEPTSHLMGTFYRTIRLVEHGLKPIYVFD 375
+K+ +DA ++YQFL +R +G LM G TSHL G FYRTI L+E G+KP YVFD
Sbjct: 21 GKKVAVDAFNAMYQFLSTIRQPDGTPLMDSKGRITSHLSGFFYRTINLMEAGIKPAYVFD 80
Query: 376 GKPP 379
GKPP
Sbjct: 81 GKPP 84
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 36/49 (73%)
Query: 3 LKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSSTTQGRLDSFF 51
L W +PDE+G++++LC + +F+E+R++ G ++L KA S Q L+S+F
Sbjct: 290 LTWREPDEEGILRFLCEEHDFSEERVKGGLERLRKAVESGKQRTLESWF 338
Score = 50.1 bits (118), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 37/50 (74%)
Query: 408 KLKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSTTTQGRLDSFF 457
+L W +PDE+G++++LC + +F+E+R++ G ++L KA + Q L+S+F
Sbjct: 289 ELTWREPDEEGILRFLCEEHDFSEERVKGGLERLRKAVESGKQRTLESWF 338
>gi|386876195|ref|ZP_10118324.1| flap structure-specific endonuclease [Candidatus Nitrosopumilus
salaria BD31]
gi|386805976|gb|EIJ65466.1| flap structure-specific endonuclease [Candidatus Nitrosopumilus
salaria BD31]
Length = 340
Score = 91.3 bits (225), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 54/159 (33%), Positives = 89/159 (55%), Gaps = 27/159 (16%)
Query: 60 KAPCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLE--- 116
+AP E EA A + + G+ YA+A++D D++ G+ L+R+ T S RK+P + +++
Sbjct: 148 EAPSEGEATAAHLTQTGQAYASASQDFDSILCGAKRLIRNFTNSGRRKIPNKNTYIDIVP 207
Query: 117 ------KVLEGMELSHEEFIDLCILLGCDYCDS-IRGIGPKRAIELIKEHRSIEKI---- 165
K L + ++ EE ID+ IL+G D+ S IGPK A++LIK+H +E I
Sbjct: 208 EIIETQKTLNALGITREELIDVGILIGTDFNPSGFERIGPKTAMKLIKQHSRLEDIPQIQ 267
Query: 166 --LENIDTKKYTVPEGWLYKEARELFRHPEVADPETIEF 202
L+ ID +++ R++F +PEVAD + I F
Sbjct: 268 EQLQEID-----------FEKIRQIFLNPEVADVDEIIF 295
Score = 86.7 bits (213), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 44/113 (38%), Positives = 71/113 (62%), Gaps = 8/113 (7%)
Query: 317 SRKICIDASMSLYQFLIAVRS-EGNQLMSVDGEPTSHLMGTFYRTIRLVEHGLKPIYVFD 375
++ + IDA ++YQFL ++R +G QL +G TSHL G YR + + G+KP+YVFD
Sbjct: 21 TKVVAIDAYNAIYQFLASIRGPDGLQLSDSEGRITSHLSGLLYRNVNFLSIGIKPVYVFD 80
Query: 376 GKPPTLKSGELNKRMEKREDA----QKALAKAQEQGKLKWSDPD---EDGLVK 421
GKPP+LK+ E+ +R + ++DA +KA+A + K++ +DG+VK
Sbjct: 81 GKPPSLKTAEIERRKQIKKDATIKYEKAVAAGNMEDARKYAQQTTSMKDGMVK 133
Score = 46.2 bits (108), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 44/79 (55%), Gaps = 18/79 (22%)
Query: 232 FIDLCILLGCDYCDS-IRGIGPKRAIELIKEHRSIEKI------LENIDTKKYTVPEGWL 284
ID+ IL+G D+ S IGPK A++LIK+H +E I L+ ID
Sbjct: 226 LIDVGILIGTDFNPSGFERIGPKTAMKLIKQHSRLEDIPQIQEQLQEID----------- 274
Query: 285 YKEARELFRHPEIADPETI 303
+++ R++F +PE+AD + I
Sbjct: 275 FEKIRQIFLNPEVADVDEI 293
>gi|238593673|ref|XP_002393263.1| hypothetical protein MPER_07036 [Moniliophthora perniciosa FA553]
gi|215460482|gb|EEB94193.1| hypothetical protein MPER_07036 [Moniliophthora perniciosa FA553]
Length = 95
Score = 91.3 bits (225), Expect = 1e-15, Method: Composition-based stats.
Identities = 46/112 (41%), Positives = 69/112 (61%), Gaps = 17/112 (15%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVLE 120
AP EAEAQCA + + GKVYA +EDMD LTF + IL RH+TFSEA+K P+ E +L+ LE
Sbjct: 1 APSEAEAQCAELARGGKVYAAGSEDMDTLTFNAPILFRHLTFSEAKKQPISEINLKVALE 60
Query: 121 GMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTK 172
G+++ D + + K A++LI+EH ++ +L+++ K
Sbjct: 61 GLDM-----------------DMSQELVQKSALKLIREHGGLKGVLKHLRAK 95
>gi|166085105|dbj|BAF99817.1| flap endonuclease-1 [Aeropyrum pernix]
Length = 317
Score = 91.3 bits (225), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 43/84 (51%), Positives = 61/84 (72%), Gaps = 1/84 (1%)
Query: 328 LYQFLIAVR-SEGNQLMSVDGEPTSHLMGTFYRTIRLVEHGLKPIYVFDGKPPTLKSGEL 386
LYQFL A+R +G LM +G TSHL G FYRTI LVE G+KP+YVFDGKPP +KS E+
Sbjct: 2 LYQFLTAIRQPDGTPLMDREGRVTSHLSGLFYRTINLVEEGIKPVYVFDGKPPEMKSREV 61
Query: 387 NKRMEKREDAQKALAKAQEQGKLK 410
+R++++ +A+ +A E G+++
Sbjct: 62 EERLKRKAEAEARYRRALEAGEVE 85
Score = 89.4 bits (220), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 54/153 (35%), Positives = 82/153 (53%), Gaps = 13/153 (8%)
Query: 60 KAPCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQE------- 112
+AP E EAQ A M + G +AT ++D D+L FGS L+R++ + RKLP ++
Sbjct: 118 QAPAEGEAQAAYMARKGDAWATGSQDYDSLLFGSPRLVRNLAITGRRKLPGRDQYVEIKP 177
Query: 113 --FHLEKVLEGMELSHEEFIDLCILLGCDY-CDSIRGIGPKRAIELIKEHRSIEKILENI 169
LE +L + ++ E+ I + ILLG DY IRG GPK A+ L+K K+L ++
Sbjct: 178 EIIELESLLSKLGITREQLIAVGILLGTDYNPGGIRGYGPKTALRLVKSLGDPMKVLASV 237
Query: 170 DTKKYTVPEGWLYKEARELFRHPEVADPETIEF 202
+Y P+ ++ E F +P D IEF
Sbjct: 238 PRGEYN-PD--YLRKVYEYFLNPPATDDYKIEF 267
>gi|18977786|ref|NP_579143.1| flap endonuclease-1 [Pyrococcus furiosus DSM 3638]
gi|397651906|ref|YP_006492487.1| flap endonuclease-1 [Pyrococcus furiosus COM1]
gi|28380014|sp|O93634.1|FEN_PYRFU RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|6980604|pdb|1B43|A Chain A, Fen-1 From P. Furiosus
gi|6980605|pdb|1B43|B Chain B, Fen-1 From P. Furiosus
gi|4102602|gb|AAD01514.1| endo/exonuclease [Pyrococcus furiosus DSM 3638]
gi|18893531|gb|AAL81538.1| flap structure-specific endonuclease [Pyrococcus furiosus DSM 3638]
gi|393189497|gb|AFN04195.1| flap endonuclease-1 [Pyrococcus furiosus COM1]
Length = 340
Score = 91.3 bits (225), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 53/148 (35%), Positives = 85/148 (57%), Gaps = 20/148 (13%)
Query: 60 KAPCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFH----- 114
+AP E EAQ A M G VYA+A++D D+L FG+ L+R++T + RKLP + +
Sbjct: 148 QAPSEGEAQAAYMAAKGSVYASASQDYDSLLFGAPRLVRNLTITGKRKLPGKNVYVEIKP 207
Query: 115 ----LEKVLEGMELSHEEFIDLCILLGCDYC-DSIRGIGPKRAIELIKEHR-SIEKILEN 168
LE+VL+ ++L+ E+ I+L IL+G DY I+GIG K+A+E+++ + + K +
Sbjct: 208 ELIILEEVLKELKLTREKLIELAILVGTDYNPGGIKGIGLKKALEIVRHSKDPLAKFQKQ 267
Query: 169 IDTKKYTVPEGWLYKEARELFRHPEVAD 196
D Y + +E F +P V D
Sbjct: 268 SDVDLYAI---------KEFFLNPPVTD 286
Score = 82.8 bits (203), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 48/94 (51%), Positives = 64/94 (68%), Gaps = 1/94 (1%)
Query: 317 SRKICIDASMSLYQFLIAVR-SEGNQLMSVDGEPTSHLMGTFYRTIRLVEHGLKPIYVFD 375
+KI IDA ++YQFL +R +G LM G TSHL G FYRTI L+E G+KP+YVFD
Sbjct: 21 GKKIAIDALNAIYQFLSTIRQKDGTPLMDSKGRITSHLSGLFYRTINLMEAGIKPVYVFD 80
Query: 376 GKPPTLKSGELNKRMEKREDAQKALAKAQEQGKL 409
G+PP K EL KR E RE+A++ +A E+G++
Sbjct: 81 GEPPEFKKKELEKRREAREEAEEKWREALEKGEI 114
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 23/50 (46%), Positives = 37/50 (74%)
Query: 2 TLKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSSTTQGRLDSFF 51
L W DPDE+G++K+LC + +F+E+R++NG ++L KA S Q L+S+F
Sbjct: 289 NLVWRDPDEEGILKFLCDEHDFSEERVKNGLERLKKAIKSGKQSTLESWF 338
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 33/103 (32%), Positives = 53/103 (51%), Gaps = 20/103 (19%)
Query: 375 DGKPPTLKSGELNKRMEKREDAQKALAKAQEQG--------------------KLKWSDP 414
D P +K L K +E ++ LAK Q+Q L W DP
Sbjct: 236 DYNPGGIKGIGLKKALEIVRHSKDPLAKFQKQSDVDLYAIKEFFLNPPVTDNYNLVWRDP 295
Query: 415 DEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSTTTQGRLDSFF 457
DE+G++K+LC + +F+E+R++NG ++L KA + Q L+S+F
Sbjct: 296 DEEGILKFLCDEHDFSEERVKNGLERLKKAIKSGKQSTLESWF 338
>gi|448309987|ref|ZP_21499840.1| flap endonuclease-1 [Natronorubrum bangense JCM 10635]
gi|445589008|gb|ELY43247.1| flap endonuclease-1 [Natronorubrum bangense JCM 10635]
Length = 325
Score = 91.3 bits (225), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 54/137 (39%), Positives = 72/137 (52%), Gaps = 10/137 (7%)
Query: 60 KAPCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVL 119
+AP E EAQ A M + G +ED DAL FG+ + LR +T +L LE L
Sbjct: 149 EAPAEGEAQAAHMARRGDADYVGSEDYDALLFGAPLTLRQLTSKGNPEL----MDLEATL 204
Query: 120 EGMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEG 179
E +L+ E+ ID IL+G D+ D + GIGPK AI I EH + +LE + +V G
Sbjct: 205 EHHDLTLEQLIDAAILIGTDFNDGVHGIGPKTAISEITEHGDLWSVLE---ARGDSVEYG 261
Query: 180 WLYKEARELFRHPEVAD 196
R+LFR P V D
Sbjct: 262 ---DRVRQLFRDPNVTD 275
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 48/90 (53%), Gaps = 2/90 (2%)
Query: 320 ICIDASMSLYQFLIAV--RSEGNQLMSVDGEPTSHLMGTFYRTIRLVEHGLKPIYVFDGK 377
+ +DA LY++L + ++ + DG ++L+G + EH + P+ VFDG
Sbjct: 24 VAVDAHNWLYRYLTTTVKWTNSDKYTTADGTEVANLIGIVQGLPKFFEHDITPVMVFDGG 83
Query: 378 PPTLKSGELNKRMEKREDAQKALAKAQEQG 407
P LK+ E+ R E+RE + L A+E+G
Sbjct: 84 PSDLKADEIESRREQRESYEDQLEVAREEG 113
Score = 52.4 bits (124), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 28/71 (39%), Positives = 37/71 (52%), Gaps = 6/71 (8%)
Query: 229 LYSFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGWLYKEA 288
L ID IL+G D+ D + GIGPK AI I EH + +LE + +V G
Sbjct: 211 LEQLIDAAILIGTDFNDGVHGIGPKTAISEITEHGDLWSVLE---ARGDSVEYG---DRV 264
Query: 289 RELFRHPEIAD 299
R+LFR P + D
Sbjct: 265 RQLFRDPNVTD 275
>gi|166085107|dbj|BAF99818.1| flap endonuclease-1 [Aeropyrum pernix]
Length = 317
Score = 91.3 bits (225), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 43/84 (51%), Positives = 61/84 (72%), Gaps = 1/84 (1%)
Query: 328 LYQFLIAVR-SEGNQLMSVDGEPTSHLMGTFYRTIRLVEHGLKPIYVFDGKPPTLKSGEL 386
LYQFL A+R +G LM +G TSHL G FYRTI LVE G+KP+YVFDGKPP +KS E+
Sbjct: 2 LYQFLTAIRQPDGTPLMDREGRVTSHLSGLFYRTINLVEEGIKPVYVFDGKPPEMKSREV 61
Query: 387 NKRMEKREDAQKALAKAQEQGKLK 410
+R++++ +A+ +A E G+++
Sbjct: 62 EERLKRKAEAEARYRRALEAGEVE 85
Score = 88.6 bits (218), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 54/153 (35%), Positives = 82/153 (53%), Gaps = 13/153 (8%)
Query: 60 KAPCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQE------- 112
+AP E EAQ A M + G +AT ++D D+L FGS L+R++ + RKLP ++
Sbjct: 118 QAPAEGEAQAAYMARKGDAWATGSQDYDSLLFGSPRLVRNLAITGRRKLPGRDQYVEIKP 177
Query: 113 --FHLEKVLEGMELSHEEFIDLCILLGCDY-CDSIRGIGPKRAIELIKEHRSIEKILENI 169
LE +L + ++ E+ I + ILLG DY IRG GPK A+ L+K K+L ++
Sbjct: 178 EIIELESLLSKLGITREQLIAVGILLGTDYNPGGIRGYGPKTALRLVKSLGDPMKVLASV 237
Query: 170 DTKKYTVPEGWLYKEARELFRHPEVADPETIEF 202
+Y P+ ++ E F +P D IEF
Sbjct: 238 PRGEYD-PD--YLRKVYEYFLNPPATDDYKIEF 267
>gi|284164367|ref|YP_003402646.1| flap structure-specific endonuclease [Haloterrigena turkmenica DSM
5511]
gi|284014022|gb|ADB59973.1| flap structure-specific endonuclease [Haloterrigena turkmenica DSM
5511]
Length = 325
Score = 90.9 bits (224), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 53/137 (38%), Positives = 74/137 (54%), Gaps = 10/137 (7%)
Query: 60 KAPCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVL 119
+AP E EAQ A MV+ G +ED DAL FGS + LR +T +L LE L
Sbjct: 149 EAPAEGEAQAAHMVRRGDADYVGSEDYDALLFGSPLTLRQLTSKGDPEL----MDLEATL 204
Query: 120 EGMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEG 179
+ +L+ E+ ID IL+G D+ + + GIGPK AI+ I EH + +LE+ + + G
Sbjct: 205 DHHDLTLEQLIDAAILIGTDFNEGVSGIGPKTAIKAITEHGDLWSVLED---RGAHIEYG 261
Query: 180 WLYKEARELFRHPEVAD 196
R+LFR P V D
Sbjct: 262 ---DRVRQLFRDPNVTD 275
Score = 50.1 bits (118), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 38/71 (53%), Gaps = 6/71 (8%)
Query: 229 LYSFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGWLYKEA 288
L ID IL+G D+ + + GIGPK AI+ I EH + +LE+ + + G
Sbjct: 211 LEQLIDAAILIGTDFNEGVSGIGPKTAIKAITEHGDLWSVLED---RGAHIEYG---DRV 264
Query: 289 RELFRHPEIAD 299
R+LFR P + D
Sbjct: 265 RQLFRDPNVTD 275
Score = 49.7 bits (117), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 47/90 (52%), Gaps = 2/90 (2%)
Query: 320 ICIDASMSLYQFLIAV--RSEGNQLMSVDGEPTSHLMGTFYRTIRLVEHGLKPIYVFDGK 377
+ +DA LY++L ++ + + DG ++L+G + E+ + P+ VFDG
Sbjct: 24 VAVDAHNWLYRYLTTTVKWTDSDVYTTADGTEVANLVGIVQGLPKFFENDITPVMVFDGG 83
Query: 378 PPTLKSGELNKRMEKREDAQKALAKAQEQG 407
P LK E+ R ++R ++ L A+E+G
Sbjct: 84 PSELKEDEIESRRDQRRTYEEQLEVAREEG 113
>gi|166085113|dbj|BAF99821.1| flap endonuclease-1 [Aeropyrum pernix]
Length = 317
Score = 90.9 bits (224), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 43/84 (51%), Positives = 60/84 (71%), Gaps = 1/84 (1%)
Query: 328 LYQFLIAVR-SEGNQLMSVDGEPTSHLMGTFYRTIRLVEHGLKPIYVFDGKPPTLKSGEL 386
LYQFL A+R +G LM +G TSHL G FYRTI LVE G+KP+YVFDGKPP +KS E+
Sbjct: 2 LYQFLTAIRQPDGTPLMDREGRVTSHLSGLFYRTINLVEEGIKPVYVFDGKPPEMKSREV 61
Query: 387 NKRMEKREDAQKALAKAQEQGKLK 410
+R+ ++ +A+ +A E G+++
Sbjct: 62 EERLRRKAEAEARYRRAVEAGEVE 85
Score = 88.2 bits (217), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 53/153 (34%), Positives = 82/153 (53%), Gaps = 13/153 (8%)
Query: 60 KAPCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQE------- 112
+AP E EAQ A M + G +AT ++D D+L FGS L+R++ + RKLP ++
Sbjct: 118 QAPAEGEAQAAYMARKGDAWATGSQDYDSLLFGSPRLVRNLAITGRRKLPGRDQYVEIKP 177
Query: 113 --FHLEKVLEGMELSHEEFIDLCILLGCDY-CDSIRGIGPKRAIELIKEHRSIEKILENI 169
LE +L + ++ E+ I + ILLG DY +RG GPK A+ L+K K+L ++
Sbjct: 178 EIIELEPLLSKLGITREQLIAVGILLGTDYNPGGVRGYGPKTALRLVKSLGDPMKVLASV 237
Query: 170 DTKKYTVPEGWLYKEARELFRHPEVADPETIEF 202
+Y P+ ++ E F +P D IEF
Sbjct: 238 PRGEYD-PD--YLRKVYEYFLNPPATDDYKIEF 267
>gi|171186427|ref|YP_001795346.1| flap endonuclease-1 [Pyrobaculum neutrophilum V24Sta]
gi|226700955|sp|B1YC46.1|FEN_THENV RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|170935639|gb|ACB40900.1| XPG I domain protein [Pyrobaculum neutrophilum V24Sta]
Length = 349
Score = 90.9 bits (224), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 45/90 (50%), Positives = 58/90 (64%), Gaps = 1/90 (1%)
Query: 320 ICIDASMSLYQFLIAVR-SEGNQLMSVDGEPTSHLMGTFYRTIRLVEHGLKPIYVFDGKP 378
I +DA +LYQFL ++R +G LM G TSHL G FYRTI L+E G+KP+YVFDGKP
Sbjct: 28 IALDAYNALYQFLASIRQPDGTPLMDRQGRVTSHLSGLFYRTINLMEAGIKPVYVFDGKP 87
Query: 379 PTLKSGELNKRMEKREDAQKALAKAQEQGK 408
P K E+ R +E A + + KA +GK
Sbjct: 88 PEFKLAEIEARRRVKEKAMEEVVKAIREGK 117
Score = 84.3 bits (207), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 52/152 (34%), Positives = 86/152 (56%), Gaps = 12/152 (7%)
Query: 60 KAPCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARK-------LPVQE 112
+AP E EAQ A M K G +A ++D D+L FGS L+R++ S R+ + +
Sbjct: 152 QAPSEGEAQAAHMAKRGHCWAVGSQDYDSLLFGSPRLVRNLAVSPKRRSGEEVVEVSPEV 211
Query: 113 FHLEKVLEGMEL-SHEEFIDLCILLGCDYC-DSIRGIGPKRAIELIKEHRSIEKILENID 170
L+ VL+ ++L E+ ID+ ILLG DY D + G+GP++A++L+ E S+EK+L+ +
Sbjct: 212 VELDSVLKALKLKGREQLIDVAILLGTDYNPDGVPGVGPQKALKLVLEFGSLEKMLDTV- 270
Query: 171 TKKYTVPEGWLYKEARELFRHPEVADPETIEF 202
+ + P L E + F +P V + +E
Sbjct: 271 LRGVSFPVDPL--EIKRFFLNPPVTEEYALEL 300
Score = 48.5 bits (114), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 45/75 (60%), Gaps = 4/75 (5%)
Query: 232 FIDLCILLGCDYC-DSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGWLYKEARE 290
ID+ ILLG DY D + G+GP++A++L+ E S+EK+L+ + + + P L E +
Sbjct: 229 LIDVAILLGTDYNPDGVPGVGPQKALKLVLEFGSLEKMLDTV-LRGVSFPVDPL--EIKR 285
Query: 291 LFRHPEIADPETIEL 305
F +P + + +EL
Sbjct: 286 FFLNPPVTEEYALEL 300
Score = 45.1 bits (105), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 33/53 (62%)
Query: 405 EQGKLKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSTTTQGRLDSFF 457
E+ L+ + DE GLV +L G+ +F+E+R+ ++L KAR+ LDSFF
Sbjct: 294 EEYALELKNVDERGLVNFLVGEHDFSEERVAKAVERLKKARARQKTSSLDSFF 346
Score = 45.1 bits (105), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 31/50 (62%)
Query: 2 TLKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSSTTQGRLDSFF 51
L+ + DE GLV +L G+ +F+E+R+ ++L KAR+ LDSFF
Sbjct: 297 ALELKNVDERGLVNFLVGEHDFSEERVAKAVERLKKARARQKTSSLDSFF 346
>gi|166085109|dbj|BAF99819.1| flap endonuclease-1 [Aeropyrum pernix]
gi|166085111|dbj|BAF99820.1| flap endonuclease-1 [Aeropyrum pernix]
Length = 317
Score = 90.9 bits (224), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 43/84 (51%), Positives = 60/84 (71%), Gaps = 1/84 (1%)
Query: 328 LYQFLIAVR-SEGNQLMSVDGEPTSHLMGTFYRTIRLVEHGLKPIYVFDGKPPTLKSGEL 386
LYQFL A+R +G LM +G TSHL G FYRTI LVE G+KP+YVFDGKPP +KS E+
Sbjct: 2 LYQFLTAIRQPDGTPLMDREGRVTSHLSGLFYRTINLVEEGIKPVYVFDGKPPEMKSREV 61
Query: 387 NKRMEKREDAQKALAKAQEQGKLK 410
+R+ ++ +A+ +A E G+++
Sbjct: 62 EERLRRKAEAEARYRRAVEAGEVE 85
Score = 88.6 bits (218), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 53/153 (34%), Positives = 82/153 (53%), Gaps = 13/153 (8%)
Query: 60 KAPCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQE------- 112
+AP E EAQ A M + G +AT ++D D+L FGS L+R++ + RKLP ++
Sbjct: 118 QAPAEGEAQAAYMARKGDAWATGSQDYDSLLFGSPRLVRNLAITGRRKLPGRDQYVEIKP 177
Query: 113 --FHLEKVLEGMELSHEEFIDLCILLGCDY-CDSIRGIGPKRAIELIKEHRSIEKILENI 169
LE +L + ++ E+ I + ILLG DY +RG GPK A+ L+K K+L ++
Sbjct: 178 EIIELEPLLSKLGITREQLIAVGILLGTDYNPGGVRGYGPKTALRLVKSLGDPMKVLASV 237
Query: 170 DTKKYTVPEGWLYKEARELFRHPEVADPETIEF 202
+Y P+ ++ E F +P D IEF
Sbjct: 238 PRGEYD-PD--YLRKVHEYFLNPPATDDYKIEF 267
>gi|429190737|ref|YP_007176415.1| flap structure-specific endonuclease [Natronobacterium gregoryi
SP2]
gi|448327264|ref|ZP_21516597.1| flap endonuclease-1 [Natronobacterium gregoryi SP2]
gi|429134955|gb|AFZ71966.1| flap structure-specific endonuclease [Natronobacterium gregoryi
SP2]
gi|445608848|gb|ELY62671.1| flap endonuclease-1 [Natronobacterium gregoryi SP2]
Length = 325
Score = 90.9 bits (224), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 54/137 (39%), Positives = 74/137 (54%), Gaps = 10/137 (7%)
Query: 60 KAPCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVL 119
+AP E EAQ A MV+ G +ED DAL FG+ + LR +T K ++ LE L
Sbjct: 149 EAPAEGEAQAAHMVRHGDADYVGSEDYDALLFGAPLTLRQLT----SKGDLELMDLEATL 204
Query: 120 EGMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEG 179
E +L+ E+ ID IL+G D+ + + GIGPK AI I EH + +LE + +V G
Sbjct: 205 EHHDLTLEQLIDAAILIGTDFNEGVSGIGPKTAIAEITEHGDLWSVLE---ARGDSVEYG 261
Query: 180 WLYKEARELFRHPEVAD 196
R+LFR P V D
Sbjct: 262 ---DRVRQLFRDPNVTD 275
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 46/90 (51%), Gaps = 2/90 (2%)
Query: 320 ICIDASMSLYQFLIAVRSEGNQLM--SVDGEPTSHLMGTFYRTIRLVEHGLKPIYVFDGK 377
+ +DA LY++L N + + DG ++L+G + E+ + P+ VFDG
Sbjct: 24 VAVDAHNWLYRYLTTTVKWTNSDIYTTADGTEVANLVGIVQGLPKFFENDVTPVMVFDGG 83
Query: 378 PPTLKSGELNKRMEKREDAQKALAKAQEQG 407
P LK E+ R E+R ++ L A+E+G
Sbjct: 84 PSELKEDEIESRREQRRTYEEQLETAREEG 113
Score = 49.7 bits (117), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 37/71 (52%), Gaps = 6/71 (8%)
Query: 229 LYSFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGWLYKEA 288
L ID IL+G D+ + + GIGPK AI I EH + +LE + +V G
Sbjct: 211 LEQLIDAAILIGTDFNEGVSGIGPKTAIAEITEHGDLWSVLE---ARGDSVEYG---DRV 264
Query: 289 RELFRHPEIAD 299
R+LFR P + D
Sbjct: 265 RQLFRDPNVTD 275
>gi|448321569|ref|ZP_21511045.1| flap endonuclease-1 [Natronococcus amylolyticus DSM 10524]
gi|445603121|gb|ELY57089.1| flap endonuclease-1 [Natronococcus amylolyticus DSM 10524]
Length = 325
Score = 90.9 bits (224), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 55/138 (39%), Positives = 73/138 (52%), Gaps = 12/138 (8%)
Query: 60 KAPCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVL 119
+AP E EAQ A +VK G +ED DAL FG+ + LR +T +L LE L
Sbjct: 149 EAPAEGEAQAAHVVKRGDADYVGSEDYDALLFGAPLTLRQLTSKGDPEL----MDLEATL 204
Query: 120 EGMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILE-NIDTKKYTVPE 178
E +L+ E+ ID IL+G D+ + + GIGPK AI I EH + +LE DT +Y
Sbjct: 205 ERHDLTLEQLIDAAILIGTDFNEGVSGIGPKTAISEITEHGDLWSVLEARGDTVEYG--- 261
Query: 179 GWLYKEARELFRHPEVAD 196
R+LFR P V D
Sbjct: 262 ----DRVRQLFRDPNVTD 275
Score = 55.8 bits (133), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 46/90 (51%), Gaps = 2/90 (2%)
Query: 320 ICIDASMSLYQFLIAVR--SEGNQLMSVDGEPTSHLMGTFYRTIRLVEHGLKPIYVFDGK 377
I +DA LY++L + + + DG ++L+G R EH + P+ VFDG
Sbjct: 24 IAVDAHNWLYRYLTTTVKWTSSEKYTTADGTEVANLIGIVQGISRFFEHDVTPVMVFDGG 83
Query: 378 PPTLKSGELNKRMEKREDAQKALAKAQEQG 407
P LK E+ R E+R ++ L A+E+G
Sbjct: 84 PSQLKEDEIESRREQRRTYEEQLETAREEG 113
Score = 51.6 bits (122), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/72 (38%), Positives = 37/72 (51%), Gaps = 8/72 (11%)
Query: 229 LYSFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILE-NIDTKKYTVPEGWLYKE 287
L ID IL+G D+ + + GIGPK AI I EH + +LE DT +Y
Sbjct: 211 LEQLIDAAILIGTDFNEGVSGIGPKTAISEITEHGDLWSVLEARGDTVEYG-------DR 263
Query: 288 ARELFRHPEIAD 299
R+LFR P + D
Sbjct: 264 VRQLFRDPNVTD 275
>gi|374628642|ref|ZP_09701027.1| flap endonuclease 1 [Methanoplanus limicola DSM 2279]
gi|373906755|gb|EHQ34859.1| flap endonuclease 1 [Methanoplanus limicola DSM 2279]
Length = 333
Score = 90.9 bits (224), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 49/141 (34%), Positives = 84/141 (59%), Gaps = 15/141 (10%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKL-------PVQEF 113
AP E EAQ A MV G V + ++D D+L FG+ L+R++T S RK+ +
Sbjct: 150 APSEGEAQAAFMVSEGIVDYSVSQDYDSLLFGAEKLVRNLTVSRKRKIRGRTITVNPETI 209
Query: 114 HLEKVLEGMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKK 173
L++VL G+E++ E+ +++ IL+G D+ IRGIGPK+A++++++ + E IL
Sbjct: 210 SLDEVLSGLEITREQLVEIGILIGTDFNSGIRGIGPKKALKIVRDG-TFENILSE----- 263
Query: 174 YTVPEGWLYKEARELFRHPEV 194
++PE + Y ++ F +P V
Sbjct: 264 -SMPE-FDYLPVKDFFLNPPV 282
Score = 77.8 bits (190), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 34/90 (37%), Positives = 54/90 (60%), Gaps = 1/90 (1%)
Query: 319 KICIDASMSLYQFLIAVR-SEGNQLMSVDGEPTSHLMGTFYRTIRLVEHGLKPIYVFDGK 377
+ D + +LYQFL +R +G LM +G TSHL G F+R +E G+ P+++FDGK
Sbjct: 24 RAAFDGNNALYQFLTTIRQPDGTPLMDSEGRVTSHLSGLFFRLTNFIEKGVSPVFIFDGK 83
Query: 378 PPTLKSGELNKRMEKREDAQKALAKAQEQG 407
PP K+ +++R +E A+ L +A + G
Sbjct: 84 PPEFKNRTISERRAAKEQAEAGLKEALKAG 113
>gi|288931681|ref|YP_003435741.1| flap structure-specific endonuclease [Ferroglobus placidus DSM
10642]
gi|288893929|gb|ADC65466.1| flap structure-specific endonuclease [Ferroglobus placidus DSM
10642]
Length = 336
Score = 90.9 bits (224), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 52/152 (34%), Positives = 84/152 (55%), Gaps = 15/152 (9%)
Query: 60 KAPCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFH----- 114
+AP E EAQ A MV+ G T ++D D+L FGS L R++T + RKLP + +
Sbjct: 146 QAPSEGEAQAAYMVRKGDADYTGSQDYDSLLFGSPKLARNLTVTGKRKLPGKNVYVEIKP 205
Query: 115 ----LEKVLEGMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENID 170
LE L+ + ++ E+ ID+ IL+G DY + ++GIG K+A++ +K + ++K+L+ +
Sbjct: 206 EIIDLEANLKKLGITREQLIDVAILVGTDYNEGVKGIGAKKALKYVKTYGDVKKVLKVLR 265
Query: 171 TKKYTVPEGWLYKEARELFRHPEVADPETIEF 202
E E RE F +P D I+F
Sbjct: 266 V------EIEHLDEIREFFLNPPTTDDYEIKF 291
Score = 80.1 bits (196), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 40/89 (44%), Positives = 54/89 (60%), Gaps = 1/89 (1%)
Query: 320 ICIDASMSLYQFLIAVR-SEGNQLMSVDGEPTSHLMGTFYRTIRLVEHGLKPIYVFDGKP 378
+ IDA ++YQFL +R +G L G TSHL G YR L+E G+KPIYVFDG+P
Sbjct: 24 VAIDAFNAIYQFLSTIRQPDGTPLKDSQGRITSHLSGLLYRNANLIEIGIKPIYVFDGEP 83
Query: 379 PTLKSGELNKRMEKREDAQKALAKAQEQG 407
P K EL +R E +++A++ A E G
Sbjct: 84 PEFKKKELERRAELKKEAEEKWKIALEAG 112
Score = 43.9 bits (102), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 38/68 (55%), Gaps = 6/68 (8%)
Query: 232 FIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGWLYKEAREL 291
ID+ IL+G DY + ++GIG K+A++ +K + ++K+L+ + E E RE
Sbjct: 224 LIDVAILVGTDYNEGVKGIGAKKALKYVKTYGDVKKVLKVLRV------EIEHLDEIREF 277
Query: 292 FRHPEIAD 299
F +P D
Sbjct: 278 FLNPPTTD 285
>gi|448327893|ref|ZP_21517213.1| flap endonuclease-1 [Natrinema versiforme JCM 10478]
gi|445617013|gb|ELY70619.1| flap endonuclease-1 [Natrinema versiforme JCM 10478]
Length = 325
Score = 90.9 bits (224), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 55/138 (39%), Positives = 72/138 (52%), Gaps = 12/138 (8%)
Query: 60 KAPCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVL 119
+AP E EAQ A MVK G +ED DAL FGS + LR +T +L LE L
Sbjct: 149 EAPAEGEAQAAHMVKRGDADYVGSEDYDALLFGSPLTLRQLTSKGDPEL----MDLEATL 204
Query: 120 EGMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILE-NIDTKKYTVPE 178
+L+ E+ ID IL+G D+ + + GIGPK AI I EH + +LE D +Y
Sbjct: 205 AHHDLTLEQLIDAAILIGTDFNEGVSGIGPKTAISAITEHGDLWSVLEARGDHVEYG--- 261
Query: 179 GWLYKEARELFRHPEVAD 196
R+LFR P+V D
Sbjct: 262 ----DRVRQLFRDPDVTD 275
Score = 53.5 bits (127), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 47/90 (52%), Gaps = 2/90 (2%)
Query: 320 ICIDASMSLYQFLIAV--RSEGNQLMSVDGEPTSHLMGTFYRTIRLVEHGLKPIYVFDGK 377
+ +DA LY++L ++ + + DG ++L+G + EH + P+ VFDG
Sbjct: 24 VAVDAHNWLYRYLTTTVKWTDSGKYTTGDGTEVANLVGIVQGLPKFFEHDITPVMVFDGG 83
Query: 378 PPTLKSGELNKRMEKREDAQKALAKAQEQG 407
P LK E+ R E+R ++ L A+E+G
Sbjct: 84 PSELKDDEIESRREQRRSYEEQLETAREEG 113
Score = 50.1 bits (118), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 37/72 (51%), Gaps = 8/72 (11%)
Query: 229 LYSFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILE-NIDTKKYTVPEGWLYKE 287
L ID IL+G D+ + + GIGPK AI I EH + +LE D +Y
Sbjct: 211 LEQLIDAAILIGTDFNEGVSGIGPKTAISAITEHGDLWSVLEARGDHVEYG-------DR 263
Query: 288 ARELFRHPEIAD 299
R+LFR P++ D
Sbjct: 264 VRQLFRDPDVTD 275
>gi|119719343|ref|YP_919838.1| flap endonuclease-1 [Thermofilum pendens Hrk 5]
gi|119524463|gb|ABL77835.1| flap endonuclease 1 [Thermofilum pendens Hrk 5]
Length = 341
Score = 90.9 bits (224), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 56/188 (29%), Positives = 105/188 (55%), Gaps = 29/188 (15%)
Query: 24 AEDRIRNGAKKLLKARSSTTQGRLDSFFTIRREEKRKAPCEAEAQCAAMVKAGKVYATAT 83
+DRI K+L+ RL F + A +AEAQ A +VK G+ +A ++
Sbjct: 128 VDDRIVESTKRLV---------RLMGFPVV------DAVHDAEAQAAYLVKRGEAWAVSS 172
Query: 84 EDMDALTFGSNILLRHMTFS---------EARKLPVQEFHLEKVLEGMELSHEEFIDLCI 134
D D+L +GS L+R++T + +ARKL + LE++L G ++ + +D+ I
Sbjct: 173 MDWDSLLYGSPRLVRYLTLTGFEWLPSKQKARKLIPELVTLEELLSGHGITLRQLVDIAI 232
Query: 135 LLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGWLYKEARELFRHPEV 194
L+G DY + ++G+GP RA+++IK + S+E + + +++ +PE Y+ R++F +P +
Sbjct: 233 LVGTDYNEGVKGVGPLRALKMIKRYGSLENL--PVSVRRH-LPEN--YEAVRQIFLNPPL 287
Query: 195 ADPETIEF 202
+ ++ F
Sbjct: 288 NEKYSLSF 295
Score = 66.2 bits (160), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 41/96 (42%), Positives = 56/96 (58%), Gaps = 2/96 (2%)
Query: 317 SRKICIDASMSLYQFLIAVRSEGNQLMSVD-GEPTSHLMGTFYRTIRLV-EHGLKPIYVF 374
R + +DA S+YQFL VR E L + GE TSHL+G R RL E+ I+VF
Sbjct: 21 GRVLAVDALNSVYQFLALVRDERGMLFTNSRGEVTSHLIGLLSRYSRLAYEYDASFIFVF 80
Query: 375 DGKPPTLKSGELNKRMEKREDAQKALAKAQEQGKLK 410
DG P LK+ EL KR ++RE A++ A+ +G L+
Sbjct: 81 DGSPHPLKARELEKRKKQREKAKQEYAELLSKGDLR 116
Score = 50.1 bits (118), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 45/69 (65%), Gaps = 5/69 (7%)
Query: 229 LYSFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGWLYKEA 288
L +D+ IL+G DY + ++G+GP RA+++IK + S+E + + +++ +PE Y+
Sbjct: 224 LRQLVDIAILVGTDYNEGVKGVGPLRALKMIKRYGSLENL--PVSVRRH-LPEN--YEAV 278
Query: 289 RELFRHPEI 297
R++F +P +
Sbjct: 279 RQIFLNPPL 287
>gi|298675706|ref|YP_003727456.1| flap structure-specific endonuclease [Methanohalobium evestigatum
Z-7303]
gi|298288694|gb|ADI74660.1| flap structure-specific endonuclease [Methanohalobium evestigatum
Z-7303]
Length = 338
Score = 90.5 bits (223), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 61/206 (29%), Positives = 101/206 (49%), Gaps = 35/206 (16%)
Query: 4 KWSDPDEDGLV----KYLCGDKNFAEDRIRNGAKKLLKARSSTTQGRLDSFFTIRREEKR 59
KW++ E GL KY G +D+I + AK LL++
Sbjct: 104 KWNEAKEKGLTEEAYKYAQGSARI-DDQILDDAKYLLESMGIPY---------------L 147
Query: 60 KAPCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFH----- 114
++P E EAQ A MV+ G ++D DAL FG+ ++R++T + RKLP + +
Sbjct: 148 QSPSEGEAQAAHMVQKGDADYVGSQDYDALLFGAPHVIRNLTITGKRKLPGKNTYIDLKP 207
Query: 115 ----LEKVLEGMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENID 170
+E+ L+ M ++ + ID+ + +G DY + IGPKRA++L+K H SI+ I++
Sbjct: 208 ETIDMEENLKSMGITRSKLIDIALCVGTDYNKGLEKIGPKRALKLVKTHDSIKSIIDETG 267
Query: 171 TKKYTVPEGWLYKEARELFRHPEVAD 196
V + ++ F +PEV D
Sbjct: 268 QNIENV------DKVKDFFMNPEVTD 287
Score = 87.4 bits (215), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 52/133 (39%), Positives = 72/133 (54%), Gaps = 17/133 (12%)
Query: 317 SRKICIDASMSLYQFLIAVRS-EGNQLMSVDGEPTSHLMGTFYRTIRLVEHGLKPIYVFD 375
++ + IDA +LYQFL +R +G L G TSHL G YR LVE +KP++VFD
Sbjct: 21 NKTVAIDAYNTLYQFLSIIRQRDGTPLQDSKGRTTSHLSGILYRITNLVEEDIKPVFVFD 80
Query: 376 GKPPTLKSGELNKRMEKREDAQKALAKAQEQGKLKWSDPDEDGLV----KYLCGDKNFAE 431
GKPP K+ L KR + RE+A + KW++ E GL KY G +
Sbjct: 81 GKPPDFKTDTLEKRKQSRENANQ-----------KWNEAKEKGLTEEAYKYAQGSARI-D 128
Query: 432 DRIRNGAKKLLKA 444
D+I + AK LL++
Sbjct: 129 DQILDDAKYLLES 141
Score = 48.1 bits (113), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 46/89 (51%), Gaps = 11/89 (12%)
Query: 211 CDYCDSIRGIGPKRAIELLYSFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILE 270
D ++++ +G R+ ID+ + +G DY + IGPKRA++L+K H SI+ I++
Sbjct: 210 IDMEENLKSMGITRS-----KLIDIALCVGTDYNKGLEKIGPKRALKLVKTHDSIKSIID 264
Query: 271 NIDTKKYTVPEGWLYKEARELFRHPEIAD 299
V + ++ F +PE+ D
Sbjct: 265 ETGQNIENV------DKVKDFFMNPEVTD 287
>gi|18312112|ref|NP_558779.1| flap endonuclease-1 [Pyrobaculum aerophilum str. IM2]
gi|28380018|sp|Q8ZYN2.1|FEN_PYRAE RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|18159543|gb|AAL62961.1| DNA endonuclease rad2 homolog [Pyrobaculum aerophilum str. IM2]
Length = 346
Score = 90.5 bits (223), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 43/90 (47%), Positives = 61/90 (67%), Gaps = 1/90 (1%)
Query: 320 ICIDASMSLYQFLIAVR-SEGNQLMSVDGEPTSHLMGTFYRTIRLVEHGLKPIYVFDGKP 378
I +DA +LYQFL ++R +G LM G TSHL G FYRTI L+E G++P+YVFDGKP
Sbjct: 28 IALDAYNALYQFLASIRQPDGTPLMDRAGRITSHLSGLFYRTINLLEAGIRPVYVFDGKP 87
Query: 379 PTLKSGELNKRMEKREDAQKALAKAQEQGK 408
P K E+ +R + RE A + + +A ++G+
Sbjct: 88 PEFKLAEIEERRKTREKAMEEVLRAIKEGR 117
Score = 90.5 bits (223), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 59/154 (38%), Positives = 85/154 (55%), Gaps = 12/154 (7%)
Query: 60 KAPCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARK-------LPVQE 112
+AP E EAQ A M + G +A ++D D+L FGS L+R++ S RK L +
Sbjct: 152 QAPSEGEAQAAYMARKGHCWAVGSQDYDSLLFGSPKLVRNLAVSPKRKIGEEVIELTPEI 211
Query: 113 FHLEKVLEGMEL-SHEEFIDLCILLGCDYC-DSIRGIGPKRAIELIKEHRSIEKILENID 170
L+ VL + L + E+ IDL ILLG DY D + G+GP++A++LI E S+EK+LE +
Sbjct: 212 IELDAVLRALRLKNREQLIDLAILLGTDYNPDGVPGVGPQKALKLIWEFGSLEKLLETVL 271
Query: 171 TKKYTVPEGWLYKEARELFRHPEVADPETIEFID 204
Y P L E ++ F +P V D E D
Sbjct: 272 KGAY-FPIDPL--EIKKFFLNPPVTDQYATEVRD 302
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/69 (42%), Positives = 42/69 (60%), Gaps = 4/69 (5%)
Query: 232 FIDLCILLGCDYC-DSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGWLYKEARE 290
IDL ILLG DY D + G+GP++A++LI E S+EK+LE + Y P L E ++
Sbjct: 229 LIDLAILLGTDYNPDGVPGVGPQKALKLIWEFGSLEKLLETVLKGAY-FPIDPL--EIKK 285
Query: 291 LFRHPEIAD 299
F +P + D
Sbjct: 286 FFLNPPVTD 294
Score = 40.0 bits (92), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 26/45 (57%)
Query: 7 DPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSSTTQGRLDSFF 51
DPDE L +L + +F+E+R+ ++L KAR LDSFF
Sbjct: 302 DPDEAALKDFLIREHDFSEERVSKALERLRKARGKLKTSSLDSFF 346
Score = 39.7 bits (91), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 26/45 (57%)
Query: 413 DPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSTTTQGRLDSFF 457
DPDE L +L + +F+E+R+ ++L KAR LDSFF
Sbjct: 302 DPDEAALKDFLIREHDFSEERVSKALERLRKARGKLKTSSLDSFF 346
>gi|145592541|ref|YP_001154543.1| flap endonuclease-1 [Pyrobaculum arsenaticum DSM 13514]
gi|166973704|sp|A4WNC4.1|FEN_PYRAR RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|145284309|gb|ABP51891.1| flap endonuclease 1 [Pyrobaculum arsenaticum DSM 13514]
Length = 346
Score = 90.1 bits (222), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 51/124 (41%), Positives = 73/124 (58%), Gaps = 9/124 (7%)
Query: 320 ICIDASMSLYQFLIAVR-SEGNQLMSVDGEPTSHLMGTFYRTIRLVEHGLKPIYVFDGKP 378
+ +DA +LYQFL ++R +G LM G TSH+ G FYRTI L+E G+KP+YVFDGKP
Sbjct: 28 VALDAYNALYQFLASIRQPDGTPLMDRAGRITSHISGLFYRTINLMEAGIKPVYVFDGKP 87
Query: 379 PTLKSGELNKRMEKREDAQKALAKAQEQGKLKWSDPDEDGLVKYLCGDKNFAEDRIRNGA 438
P K E+ +R + +E A + L +A ++G+ D + KY F + + A
Sbjct: 88 PEFKLAEIEERRKAKEKATEELVRAIKEGR-------RDEVAKY-AKRAIFLTNEMVEDA 139
Query: 439 KKLL 442
KKLL
Sbjct: 140 KKLL 143
Score = 88.6 bits (218), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 51/119 (42%), Positives = 73/119 (61%), Gaps = 9/119 (7%)
Query: 60 KAPCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARK-------LPVQE 112
+AP E EAQ A M + G +A ++D D+L FGS L+R++ S RK L +
Sbjct: 152 QAPSEGEAQAAYMARRGHCWAVGSQDYDSLLFGSPRLVRNLATSPKRKVGDEVVELSPEI 211
Query: 113 FHLEKVLEGMEL-SHEEFIDLCILLGCDYC-DSIRGIGPKRAIELIKEHRSIEKILENI 169
L+ VL+ + L S E+ IDL ILLG DY D + GIGP+RA++LI E S+EK+L+ +
Sbjct: 212 IELDAVLKSLRLRSREQLIDLAILLGTDYNPDGVPGIGPQRALKLIWEFGSLEKLLDTV 270
Score = 48.9 bits (115), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 23/42 (54%), Positives = 31/42 (73%), Gaps = 1/42 (2%)
Query: 232 FIDLCILLGCDYC-DSIRGIGPKRAIELIKEHRSIEKILENI 272
IDL ILLG DY D + GIGP+RA++LI E S+EK+L+ +
Sbjct: 229 LIDLAILLGTDYNPDGVPGIGPQRALKLIWEFGSLEKLLDTV 270
Score = 43.5 bits (101), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 21/40 (52%), Positives = 28/40 (70%), Gaps = 1/40 (2%)
Query: 201 EFIDLCILLGCDYC-DSIRGIGPKRAIELLYSFIDLCILL 239
+ IDL ILLG DY D + GIGP+RA++L++ F L LL
Sbjct: 228 QLIDLAILLGTDYNPDGVPGIGPQRALKLIWEFGSLEKLL 267
>gi|126460720|ref|YP_001056998.1| flap endonuclease-1 [Pyrobaculum calidifontis JCM 11548]
gi|166973705|sp|A3MY15.1|FEN_PYRCJ RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|126250441|gb|ABO09532.1| flap endonuclease 1 [Pyrobaculum calidifontis JCM 11548]
Length = 346
Score = 90.1 bits (222), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 58/152 (38%), Positives = 86/152 (56%), Gaps = 12/152 (7%)
Query: 60 KAPCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARK-------LPVQE 112
+AP E EAQ A M K G +A ++D D+L FGS L+R++ S RK L +
Sbjct: 152 QAPSEGEAQAAHMAKRGHCWAVGSQDYDSLLFGSPRLVRNLAVSPKRKVGEEVVELSPEL 211
Query: 113 FHLEKVLEGMEL-SHEEFIDLCILLGCDYC-DSIRGIGPKRAIELIKEHRSIEKILENID 170
L+ VL+ ++L E+ IDL ILLG DY + + G+GP++A++LI E S+EK+L+ +
Sbjct: 212 IELDAVLKSLKLKGREQLIDLAILLGTDYNPEGVPGVGPQKALKLIWEFGSLEKLLQTV- 270
Query: 171 TKKYTVPEGWLYKEARELFRHPEVADPETIEF 202
K P L + RE F +P V D + E
Sbjct: 271 LKGVQFPVDPL--KIREFFLNPPVTDQYSTEL 300
Score = 87.4 bits (215), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 43/90 (47%), Positives = 60/90 (66%), Gaps = 1/90 (1%)
Query: 320 ICIDASMSLYQFLIAVR-SEGNQLMSVDGEPTSHLMGTFYRTIRLVEHGLKPIYVFDGKP 378
+ +DA +LYQFL ++R +G LM G TSHL G FYRTI L+E G+KP+YVFDGKP
Sbjct: 28 VALDAYNALYQFLASIRQPDGTPLMDRAGRITSHLSGLFYRTINLLEAGVKPVYVFDGKP 87
Query: 379 PTLKSGELNKRMEKREDAQKALAKAQEQGK 408
P K E+ +R + +E A + + KA +G+
Sbjct: 88 PEFKLLEIEQRKKAKEKALEEVEKAIREGR 117
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 45/75 (60%), Gaps = 4/75 (5%)
Query: 232 FIDLCILLGCDYC-DSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGWLYKEARE 290
IDL ILLG DY + + G+GP++A++LI E S+EK+L+ + K P L + RE
Sbjct: 229 LIDLAILLGTDYNPEGVPGVGPQKALKLIWEFGSLEKLLQTV-LKGVQFPVDPL--KIRE 285
Query: 291 LFRHPEIADPETIEL 305
F +P + D + EL
Sbjct: 286 FFLNPPVTDQYSTEL 300
>gi|448337894|ref|ZP_21526967.1| flap endonuclease-1 [Natrinema pallidum DSM 3751]
gi|445624854|gb|ELY78227.1| flap endonuclease-1 [Natrinema pallidum DSM 3751]
Length = 325
Score = 90.1 bits (222), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 55/137 (40%), Positives = 71/137 (51%), Gaps = 10/137 (7%)
Query: 60 KAPCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVL 119
+AP E EAQ A MVK G +ED DAL FGS + LR +T +L LE L
Sbjct: 149 EAPAEGEAQAAHMVKRGDADYVGSEDYDALLFGSPLTLRQLTSKGDPEL----MDLEATL 204
Query: 120 EGMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEG 179
+L+ E+ ID IL+G D+ + + GIGPK AI I EH + LE + V G
Sbjct: 205 AQHDLTLEQLIDAAILIGTDFNEGVSGIGPKTAISAITEHGDLWSALE---ARGDHVEHG 261
Query: 180 WLYKEARELFRHPEVAD 196
R+LFR P+V D
Sbjct: 262 ---DRVRQLFRDPDVTD 275
Score = 52.4 bits (124), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 46/90 (51%), Gaps = 2/90 (2%)
Query: 320 ICIDASMSLYQFLIAV--RSEGNQLMSVDGEPTSHLMGTFYRTIRLVEHGLKPIYVFDGK 377
+ +DA LY++L ++ + + DG ++L+G + EH + P+ VFDG
Sbjct: 24 VAVDAHNWLYRYLTTTVKWTDSAKYTTGDGTEVANLVGIVQGLPKFFEHDITPVMVFDGG 83
Query: 378 PPTLKSGELNKRMEKREDAQKALAKAQEQG 407
P LK E+ R E+R + L A+E+G
Sbjct: 84 PSELKDDEIESRREQRRSYEAQLETAREEG 113
Score = 49.7 bits (117), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 38/80 (47%), Gaps = 6/80 (7%)
Query: 229 LYSFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGWLYKEA 288
L ID IL+G D+ + + GIGPK AI I EH + LE + V G
Sbjct: 211 LEQLIDAAILIGTDFNEGVSGIGPKTAISAITEHGDLWSALE---ARGDHVEHG---DRV 264
Query: 289 RELFRHPEIADPETIELVAD 308
R+LFR P++ D E D
Sbjct: 265 RQLFRDPDVTDDYEFESTVD 284
>gi|70606571|ref|YP_255441.1| flap endonuclease-1 [Sulfolobus acidocaldarius DSM 639]
gi|449066790|ref|YP_007433872.1| flap endonuclease-1 [Sulfolobus acidocaldarius N8]
gi|449069063|ref|YP_007436144.1| flap endonuclease-1 [Sulfolobus acidocaldarius Ron12/I]
gi|68567219|gb|AAY80148.1| XPG/RAD25 related endonuclease [Sulfolobus acidocaldarius DSM 639]
gi|449035298|gb|AGE70724.1| flap endonuclease-1 [Sulfolobus acidocaldarius N8]
gi|449037571|gb|AGE72996.1| flap endonuclease-1 [Sulfolobus acidocaldarius Ron12/I]
Length = 331
Score = 89.7 bits (221), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 51/148 (34%), Positives = 87/148 (58%), Gaps = 12/148 (8%)
Query: 60 KAPCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFH----- 114
+AP E EA+ A + +A A++D D+L FG+ L+R++T S RKLP ++ +
Sbjct: 130 QAPGEGEAEAAYINSIDLSWAAASQDYDSLLFGAKRLVRNITISGKRKLPNKDVYVEIKP 189
Query: 115 ----LEKVLEGMELSHEEFIDLCILLGCDYC-DSIRGIGPKRAIELIKEHRSIEKILENI 169
LE +L+ + ++ E+ ID+ IL+G DY D ++GIG K A+ +IK++ +IE +E
Sbjct: 190 ELIELESLLKKLGINREQLIDIAILIGTDYNPDGVKGIGVKTALRIIKKYNNIENAIEKG 249
Query: 170 DTKKYTVPEGWLYKEARELFRHPEVADP 197
+ + + + +E R+LF PEV P
Sbjct: 250 EIQLSKI--NFDIREIRKLFITPEVKKP 275
Score = 83.2 bits (204), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 39/75 (52%), Positives = 52/75 (69%), Gaps = 1/75 (1%)
Query: 316 ESRKICIDASMSLYQFLIAVR-SEGNQLMSVDGEPTSHLMGTFYRTIRLVEHGLKPIYVF 374
+ +KI IDA ++YQFL A+R +G L+ G TSHL G FYRTI ++E G+ PI+VF
Sbjct: 2 KGKKISIDAYNTIYQFLAAIRQPDGTPLIDSKGRITSHLNGLFYRTISIIESGIIPIFVF 61
Query: 375 DGKPPTLKSGELNKR 389
DGKPP KS E+ +R
Sbjct: 62 DGKPPEKKSEEIERR 76
Score = 48.1 bits (113), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 46/76 (60%), Gaps = 4/76 (5%)
Query: 232 FIDLCILLGCDYC-DSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGWLYKEARE 290
ID+ IL+G DY D ++GIG K A+ +IK++ +IE +E + + + + +E R+
Sbjct: 208 LIDIAILIGTDYNPDGVKGIGVKTALRIIKKYNNIENAIEKGEIQLSKI--NFDIREIRK 265
Query: 291 LFRHPEIADP-ETIEL 305
LF PE+ P E +EL
Sbjct: 266 LFITPEVKKPTERLEL 281
>gi|383320867|ref|YP_005381708.1| flap endonuclease 1 [Methanocella conradii HZ254]
gi|379322237|gb|AFD01190.1| flap endonuclease 1 [Methanocella conradii HZ254]
Length = 339
Score = 89.7 bits (221), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 45/145 (31%), Positives = 83/145 (57%), Gaps = 15/145 (10%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFH------ 114
AP E EAQ + MV G ++D D+L FG+ ++R++T + RK+P + +
Sbjct: 148 APSEGEAQASCMVSKGAADYVGSQDYDSLLFGAPRMVRNVTITGRRKVPRRNIYVDVKPE 207
Query: 115 ---LEKVLEGMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDT 171
L++ LE ++++ E+ ID+ IL+G D+ I +GPK A++L+K+H++++++ ++
Sbjct: 208 IVELKETLETLDITREQLIDIGILVGTDFNPGIYKVGPKTALKLVKKHKNMQEVFGELEQ 267
Query: 172 KKYTVPEGWLYKEARELFRHPEVAD 196
Y+E +E F HP V D
Sbjct: 268 TIEN------YEEIKEFFLHPPVTD 286
Score = 84.0 bits (206), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 42/89 (47%), Positives = 56/89 (62%), Gaps = 1/89 (1%)
Query: 320 ICIDASMSLYQFLIAVR-SEGNQLMSVDGEPTSHLMGTFYRTIRLVEHGLKPIYVFDGKP 378
I IDA +LYQFL +R +G L+ G+ TSHL G YR L+E G+KP++VFDGKP
Sbjct: 24 IAIDAFNTLYQFLSIIRQPDGTPLVDEKGQVTSHLSGIIYRVTNLIELGIKPVFVFDGKP 83
Query: 379 PTLKSGELNKRMEKREDAQKALAKAQEQG 407
P LK+ + R E RE A++ A E+G
Sbjct: 84 PLLKAETIKARAEVREAARQMYEAAVEEG 112
Score = 49.7 bits (117), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 40/68 (58%), Gaps = 6/68 (8%)
Query: 232 FIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGWLYKEAREL 291
ID+ IL+G D+ I +GPK A++L+K+H++++++ ++ Y+E +E
Sbjct: 225 LIDIGILVGTDFNPGIYKVGPKTALKLVKKHKNMQEVFGELEQTIEN------YEEIKEF 278
Query: 292 FRHPEIAD 299
F HP + D
Sbjct: 279 FLHPPVTD 286
>gi|118575473|ref|YP_875216.1| 5'-3' exonuclease [Cenarchaeum symbiosum A]
gi|166973696|sp|A0RU95.1|FEN_CENSY RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|118193994|gb|ABK76912.1| 5'-3' exonuclease [Cenarchaeum symbiosum A]
Length = 340
Score = 89.7 bits (221), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 53/152 (34%), Positives = 83/152 (54%), Gaps = 15/152 (9%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHL----- 115
AP E EA A + + G YA+A++D D++ FG+ L+R+ T S RK+P + ++
Sbjct: 149 APSEGEATAAYLTQTGDAYASASQDFDSVLFGAKRLVRNFTNSGRRKIPNRNMYVDVQPE 208
Query: 116 ----EKVLEGMELSHEEFIDLCILLGCDYC-DSIRGIGPKRAIELIKEHRSIEKILENID 170
EK L ++L+ E+ +D+ IL+G D+ D IGPK A++L+ EH +E I I
Sbjct: 209 IIETEKTLTTLDLTREQLVDVGILIGTDFNPDGFERIGPKTALKLVHEHGRLEDI-PRIQ 267
Query: 171 TKKYTVPEGWLYKEARELFRHPEVADPETIEF 202
+ +V Y E R++F PE IEF
Sbjct: 268 DELGSVS----YAEIRKIFLEPESPGNIEIEF 295
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 39/94 (41%), Positives = 56/94 (59%), Gaps = 1/94 (1%)
Query: 317 SRKICIDASMSLYQFLIAVRS-EGNQLMSVDGEPTSHLMGTFYRTIRLVEHGLKPIYVFD 375
++ + IDA ++YQFL +R +G QL G TSHL G YR + G+KP+YVFD
Sbjct: 21 TKVVAIDAYNAIYQFLATIRGPDGMQLTDARGRVTSHLSGLLYRNASFLSMGIKPVYVFD 80
Query: 376 GKPPTLKSGELNKRMEKREDAQKALAKAQEQGKL 409
G+PPTLKS E+ +R ++ A A A + G +
Sbjct: 81 GRPPTLKSAEIERRRNVKKGAAVKYAAAVDAGNM 114
>gi|15679628|ref|NP_276745.1| flap endonuclease-1 [Methanothermobacter thermautotrophicus str.
Delta H]
gi|28380011|sp|O27670.1|FEN_METTH RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|2622760|gb|AAB86106.1| DNA repair protein Rad2 [Methanothermobacter thermautotrophicus
str. Delta H]
Length = 328
Score = 89.7 bits (221), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 45/137 (32%), Positives = 81/137 (59%), Gaps = 6/137 (4%)
Query: 60 KAPCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVL 119
+AP E EAQ + MVK G +A A++D D L FG+ ++R++T S + P + LE L
Sbjct: 148 QAPGEGEAQASYMVKMGDAWAVASQDYDCLLFGAPRVVRNLTLSGKLEDP-EIIELESTL 206
Query: 120 EGMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEG 179
+ +SH + +D+ +L+G D+ + ++GIG +R ++LI+E I K++ +++ P+
Sbjct: 207 RELSISHTQLVDMALLVGTDFNEGVKGIGARRGLKLIREKGDIFKVIRDLEADIGGDPQ- 265
Query: 180 WLYKEARELFRHPEVAD 196
R +F PEV++
Sbjct: 266 ----VLRRIFLEPEVSE 278
Score = 72.8 bits (177), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 39/106 (36%), Positives = 62/106 (58%), Gaps = 5/106 (4%)
Query: 309 VAPSSIR----ESRKICIDASMSLYQFLIAVRS-EGNQLMSVDGEPTSHLMGTFYRTIRL 363
V+P IR R + +DA+ +LYQFL ++R +G LM G TSHL G YRT +
Sbjct: 9 VSPRRIRLEDLRGRTVAVDAANTLYQFLSSIRQRDGTPLMDSRGRVTSHLSGILYRTAAV 68
Query: 364 VEHGLKPIYVFDGKPPTLKSGELNKRMEKREDAQKALAKAQEQGKL 409
+E ++ IYVFDG+ LK +++R + R+ ++ +A E+G +
Sbjct: 69 MEREIRVIYVFDGRSHHLKGETVSRRADIRKKSEVEWKRALEEGDI 114
Score = 44.3 bits (103), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 32/49 (65%), Gaps = 2/49 (4%)
Query: 3 LKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSSTTQGRLDSFF 51
++W PD +G++++LC + F+EDR+R KK A S+TQ L+ +F
Sbjct: 282 IRWRKPDVEGVIEFLCTEHGFSEDRVRAALKKFEGA--SSTQKSLEDWF 328
Score = 43.9 bits (102), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 18/68 (26%), Positives = 40/68 (58%), Gaps = 5/68 (7%)
Query: 232 FIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGWLYKEAREL 291
+D+ +L+G D+ + ++GIG +R ++LI+E I K++ +++ P+ R +
Sbjct: 216 LVDMALLVGTDFNEGVKGIGARRGLKLIREKGDIFKVIRDLEADIGGDPQ-----VLRRI 270
Query: 292 FRHPEIAD 299
F PE+++
Sbjct: 271 FLEPEVSE 278
Score = 43.5 bits (101), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 35/56 (62%), Gaps = 2/56 (3%)
Query: 402 KAQEQGKLKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSTTTQGRLDSFF 457
+ E +++W PD +G++++LC + F+EDR+R KK A ++TQ L+ +F
Sbjct: 275 EVSEDYEIRWRKPDVEGVIEFLCTEHGFSEDRVRAALKKFEGA--SSTQKSLEDWF 328
>gi|340344625|ref|ZP_08667757.1| Flap structure-specific endonuclease [Candidatus Nitrosoarchaeum
koreensis MY1]
gi|339519766|gb|EGP93489.1| Flap structure-specific endonuclease [Candidatus Nitrosoarchaeum
koreensis MY1]
Length = 341
Score = 89.7 bits (221), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 47/113 (41%), Positives = 69/113 (61%), Gaps = 8/113 (7%)
Query: 317 SRKICIDASMSLYQFLIAVRS-EGNQLMSVDGEPTSHLMGTFYRTIRLVEHGLKPIYVFD 375
S+ I IDA ++YQFL ++R +G QL +G TSHL G YR I + G+KP+YVFD
Sbjct: 21 SKVIAIDAYNAIYQFLASIRGPDGLQLSDSEGRITSHLSGLLYRNINFLSLGIKPVYVFD 80
Query: 376 GKPPTLKSGELNKRMEKREDAQKALAKAQEQGKL-------KWSDPDEDGLVK 421
GKPP+LK+ E+ +R + ++DA KA +G L + + +DG+VK
Sbjct: 81 GKPPSLKTAEIERRKQIKKDATIKYEKAIAEGNLEDARKFAQQTTSMKDGMVK 133
Score = 81.6 bits (200), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 61/209 (29%), Positives = 110/209 (52%), Gaps = 28/209 (13%)
Query: 10 EDGLVKYLCGDKNFAEDRIRNGAKKLLKARSSTTQGRLD------SFFTIRREEKRKAPC 63
+D +KY +K AE + + A+K + +S G + S+F I + A
Sbjct: 99 KDATIKY---EKAIAEGNLED-ARKFAQQTTSMKDGMVKESKQILSYFGIPYID---AAS 151
Query: 64 EAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLE------- 116
E EA A + G+ YA+A++D D++ G+ L+R+ T S RK+P + ++E
Sbjct: 152 EGEATAAHLTNTGQAYASASQDFDSILCGAKRLIRNFTNSGRRKIPNRNTYVEIEPEIIE 211
Query: 117 --KVLEGMELSHEEFIDLCILLGCDYC-DSIRGIGPKRAIELIKEHRSIEKILENIDTKK 173
K L+ +E++ E+ +D+ IL+G D+ + IGPK A+++IK++ +E I + I +
Sbjct: 212 TQKTLDSLEITREQIVDIGILIGTDFNPNGFDRIGPKTALKMIKQYSRLEDIPQ-IQEQL 270
Query: 174 YTVPEGWLYKEARELFRHPEVADPETIEF 202
T+ Y++ R++F P V D + I F
Sbjct: 271 QTIE----YEKIRKIFLEPIVTDVDEIVF 295
>gi|448310824|ref|ZP_21500603.1| flap endonuclease-1 [Natronolimnobius innermongolicus JCM 12255]
gi|445607172|gb|ELY61065.1| flap endonuclease-1 [Natronolimnobius innermongolicus JCM 12255]
Length = 325
Score = 89.7 bits (221), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 53/137 (38%), Positives = 72/137 (52%), Gaps = 10/137 (7%)
Query: 60 KAPCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVL 119
+AP E EAQ A MV+ G +ED DAL FG+ + LR +T +L LE L
Sbjct: 149 EAPAEGEAQAAHMVRRGDADYVGSEDYDALLFGAPLTLRQLTSKGDPEL----MDLEATL 204
Query: 120 EGMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEG 179
E EL+ E+ ID IL+G D+ + + GIGPK A+ I +H + +LE + V G
Sbjct: 205 ERHELTLEQLIDAAILIGTDFNEGVSGIGPKTALTAITDHGDLWSVLE---ARGAHVEHG 261
Query: 180 WLYKEARELFRHPEVAD 196
R+LFR P V D
Sbjct: 262 ---DRVRQLFREPNVTD 275
Score = 52.0 bits (123), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 47/90 (52%), Gaps = 2/90 (2%)
Query: 320 ICIDASMSLYQFLIAVR--SEGNQLMSVDGEPTSHLMGTFYRTIRLVEHGLKPIYVFDGK 377
+ +DA LY++L ++ ++ + DG ++L+G + E+ + P+ VFDG
Sbjct: 24 VAVDAHNWLYRYLTTTVKWTDSSKYTTADGTEVANLIGIVQGLPKFFENDITPVMVFDGG 83
Query: 378 PPTLKSGELNKRMEKREDAQKALAKAQEQG 407
P LK E+ R E+R + L A+E+G
Sbjct: 84 PSELKDDEIESRREQRRSYEAQLETAREEG 113
Score = 48.9 bits (115), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 41/88 (46%), Gaps = 6/88 (6%)
Query: 229 LYSFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGWLYKEA 288
L ID IL+G D+ + + GIGPK A+ I +H + +LE + V G
Sbjct: 211 LEQLIDAAILIGTDFNEGVSGIGPKTALTAITDHGDLWSVLE---ARGAHVEHG---DRV 264
Query: 289 RELFRHPEIADPETIELVADVAPSSIRE 316
R+LFR P + D E D + RE
Sbjct: 265 RQLFREPNVTDEYEFETALDPDLEAARE 292
>gi|379005480|ref|YP_005261152.1| flap structure-specific endonuclease [Pyrobaculum oguniense TE7]
gi|375160933|gb|AFA40545.1| flap structure-specific endonuclease [Pyrobaculum oguniense TE7]
Length = 346
Score = 89.4 bits (220), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 42/90 (46%), Positives = 60/90 (66%), Gaps = 1/90 (1%)
Query: 320 ICIDASMSLYQFLIAVR-SEGNQLMSVDGEPTSHLMGTFYRTIRLVEHGLKPIYVFDGKP 378
+ +DA +LYQFL ++R +G LM G TSH+ G FYRTI L+E G+KP+YVFDGKP
Sbjct: 28 VALDAYNALYQFLASIRQPDGTPLMDRAGRITSHISGLFYRTINLMEAGIKPVYVFDGKP 87
Query: 379 PTLKSGELNKRMEKREDAQKALAKAQEQGK 408
P K E+ +R +E A + L +A ++G+
Sbjct: 88 PEFKLAEIEERRRAKEKATEELVRAIKEGR 117
Score = 88.6 bits (218), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 51/119 (42%), Positives = 73/119 (61%), Gaps = 9/119 (7%)
Query: 60 KAPCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARK-------LPVQE 112
+AP E EAQ A M + G +A ++D D+L FGS L+R++ S RK L +
Sbjct: 152 QAPSEGEAQAAYMARRGHCWAVGSQDYDSLLFGSPRLVRNLAASPKRKVGDEVVELSPEI 211
Query: 113 FHLEKVLEGMEL-SHEEFIDLCILLGCDYC-DSIRGIGPKRAIELIKEHRSIEKILENI 169
L+ VL+ + L S E+ IDL ILLG DY D + GIGP+RA++LI E S+EK+L+ +
Sbjct: 212 IELDTVLKSLRLRSREQLIDLAILLGTDYNPDGVPGIGPQRALKLIWEFGSLEKLLDTV 270
Score = 49.3 bits (116), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 23/42 (54%), Positives = 31/42 (73%), Gaps = 1/42 (2%)
Query: 232 FIDLCILLGCDYC-DSIRGIGPKRAIELIKEHRSIEKILENI 272
IDL ILLG DY D + GIGP+RA++LI E S+EK+L+ +
Sbjct: 229 LIDLAILLGTDYNPDGVPGIGPQRALKLIWEFGSLEKLLDTV 270
Score = 43.5 bits (101), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 21/40 (52%), Positives = 28/40 (70%), Gaps = 1/40 (2%)
Query: 201 EFIDLCILLGCDYC-DSIRGIGPKRAIELLYSFIDLCILL 239
+ IDL ILLG DY D + GIGP+RA++L++ F L LL
Sbjct: 228 QLIDLAILLGTDYNPDGVPGIGPQRALKLIWEFGSLEKLL 267
>gi|76364187|sp|Q4JAN1.2|FEN_SULAC RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
Length = 349
Score = 89.4 bits (220), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 51/148 (34%), Positives = 87/148 (58%), Gaps = 12/148 (8%)
Query: 60 KAPCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFH----- 114
+AP E EA+ A + +A A++D D+L FG+ L+R++T S RKLP ++ +
Sbjct: 148 QAPGEGEAEAAYINSIDLSWAAASQDYDSLLFGAKRLVRNITISGKRKLPNKDVYVEIKP 207
Query: 115 ----LEKVLEGMELSHEEFIDLCILLGCDYC-DSIRGIGPKRAIELIKEHRSIEKILENI 169
LE +L+ + ++ E+ ID+ IL+G DY D ++GIG K A+ +IK++ +IE +E
Sbjct: 208 ELIELESLLKKLGINREQLIDIAILIGTDYNPDGVKGIGVKTALRIIKKYNNIENAIEKG 267
Query: 170 DTKKYTVPEGWLYKEARELFRHPEVADP 197
+ + + + +E R+LF PEV P
Sbjct: 268 EIQLSKI--NFDIREIRKLFITPEVKKP 293
Score = 83.2 bits (204), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 39/74 (52%), Positives = 51/74 (68%), Gaps = 1/74 (1%)
Query: 317 SRKICIDASMSLYQFLIAVR-SEGNQLMSVDGEPTSHLMGTFYRTIRLVEHGLKPIYVFD 375
+KI IDA ++YQFL A+R +G L+ G TSHL G FYRTI ++E G+ PI+VFD
Sbjct: 21 GKKISIDAYNTIYQFLAAIRQPDGTPLIDSKGRITSHLNGLFYRTISIIESGIIPIFVFD 80
Query: 376 GKPPTLKSGELNKR 389
GKPP KS E+ +R
Sbjct: 81 GKPPEKKSEEIERR 94
Score = 47.8 bits (112), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 46/76 (60%), Gaps = 4/76 (5%)
Query: 232 FIDLCILLGCDYC-DSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGWLYKEARE 290
ID+ IL+G DY D ++GIG K A+ +IK++ +IE +E + + + + +E R+
Sbjct: 226 LIDIAILIGTDYNPDGVKGIGVKTALRIIKKYNNIENAIEKGEIQLSKI--NFDIREIRK 283
Query: 291 LFRHPEIADP-ETIEL 305
LF PE+ P E +EL
Sbjct: 284 LFITPEVKKPTERLEL 299
>gi|448299433|ref|ZP_21489445.1| flap endonuclease-1 [Natronorubrum tibetense GA33]
gi|445588023|gb|ELY42272.1| flap endonuclease-1 [Natronorubrum tibetense GA33]
Length = 325
Score = 89.4 bits (220), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 55/137 (40%), Positives = 72/137 (52%), Gaps = 10/137 (7%)
Query: 60 KAPCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVL 119
+AP E EAQ A MVK G +ED DAL FGS LR +T +L LE L
Sbjct: 149 EAPAEGEAQAAHMVKRGDADYVGSEDYDALLFGSPRTLRQLTSKGDPEL----MDLEATL 204
Query: 120 EGMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEG 179
+ EL+ E+ ID IL+G D+ + + GIGPK AI+ I EH + +LE + + G
Sbjct: 205 DHHELTLEQLIDAAILIGTDFNEGVSGIGPKTAIKAITEHGDLWSVLE---ARGAHIEYG 261
Query: 180 WLYKEARELFRHPEVAD 196
R+LFR P V D
Sbjct: 262 ---DRVRKLFRDPNVTD 275
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 46/90 (51%), Gaps = 2/90 (2%)
Query: 320 ICIDASMSLYQFLIAVRSEGN--QLMSVDGEPTSHLMGTFYRTIRLVEHGLKPIYVFDGK 377
+ +DA LY++L N + + DG ++L+G + EH + P+ VFDG
Sbjct: 24 VAVDAHNWLYRYLTTTVKWTNSGKYTTSDGTEVANLIGIVQGLPKFFEHDIVPVMVFDGG 83
Query: 378 PPTLKSGELNKRMEKREDAQKALAKAQEQG 407
P LK E+ R E+R ++ L A+E+G
Sbjct: 84 PSELKDDEIESRREQRRSYEEQLETAREEG 113
Score = 48.9 bits (115), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 39/80 (48%), Gaps = 6/80 (7%)
Query: 229 LYSFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGWLYKEA 288
L ID IL+G D+ + + GIGPK AI+ I EH + +LE + + G
Sbjct: 211 LEQLIDAAILIGTDFNEGVSGIGPKTAIKAITEHGDLWSVLE---ARGAHIEYG---DRV 264
Query: 289 RELFRHPEIADPETIELVAD 308
R+LFR P + D E D
Sbjct: 265 RKLFRDPNVTDDYEFETTLD 284
>gi|116754923|ref|YP_844041.1| flap endonuclease-1 [Methanosaeta thermophila PT]
gi|121693591|sp|A0B9M7.1|FEN_METTP RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|116666374|gb|ABK15401.1| flap endonuclease 1 [Methanosaeta thermophila PT]
Length = 336
Score = 89.4 bits (220), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 50/146 (34%), Positives = 81/146 (55%), Gaps = 15/146 (10%)
Query: 60 KAPCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFH----- 114
+AP E EAQ A M G V A++D D+L FG+ ++R++ + RK+P + +
Sbjct: 146 QAPSEGEAQAAFMAIRGDVDYVASQDYDSLLFGAPRVVRNLAITGRRKMPRKNIYIDVPP 205
Query: 115 ----LEKVLEGMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENID 170
LE+ L + +S E+ ID+ I+ G DY + +GPKRA++LI+EH +E +L+ +
Sbjct: 206 EVIILEEELTRLGISREQLIDIGIMCGTDYNRGLPKVGPKRALKLIREHGCLEAVLDALG 265
Query: 171 TKKYTVPEGWLYKEARELFRHPEVAD 196
++E RELF HP V +
Sbjct: 266 ESIEN------FREIRELFLHPAVTE 285
Score = 75.5 bits (184), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 38/89 (42%), Positives = 51/89 (57%), Gaps = 1/89 (1%)
Query: 320 ICIDASMSLYQFLIAVR-SEGNQLMSVDGEPTSHLMGTFYRTIRLVEHGLKPIYVFDGKP 378
I +D +LYQFL +R +G LM G TSHL G YR L+E G++ +VFDG P
Sbjct: 24 IAVDGFNTLYQFLSIIRQPDGTPLMDASGRVTSHLSGLLYRMTNLIEVGIRVAFVFDGTP 83
Query: 379 PTLKSGELNKRMEKREDAQKALAKAQEQG 407
P LK+G L R + +E A+ L +A G
Sbjct: 84 PELKAGTLAARAQMKEAAEIQLQEAIATG 112
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 39/68 (57%), Gaps = 6/68 (8%)
Query: 232 FIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGWLYKEAREL 291
ID+ I+ G DY + +GPKRA++LI+EH +E +L+ + ++E REL
Sbjct: 224 LIDIGIMCGTDYNRGLPKVGPKRALKLIREHGCLEAVLDALGESIEN------FREIREL 277
Query: 292 FRHPEIAD 299
F HP + +
Sbjct: 278 FLHPAVTE 285
>gi|170291015|ref|YP_001737831.1| flap endonuclease-1 [Candidatus Korarchaeum cryptofilum OPF8]
gi|226700953|sp|B1L6R9.1|FEN_KORCO RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|170175095|gb|ACB08148.1| XPG I domain protein [Candidatus Korarchaeum cryptofilum OPF8]
Length = 342
Score = 89.4 bits (220), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 48/120 (40%), Positives = 74/120 (61%), Gaps = 10/120 (8%)
Query: 60 KAPCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFH----- 114
+AP E EAQ A M G V+ATA++D D+L FG+ L+R++T + RKLP +E +
Sbjct: 149 QAPSEGEAQAAHMAMKGDVWATASQDYDSLLFGAPRLIRNLTITGKRKLPGKEVYVDINP 208
Query: 115 ----LEKVLEGMELSHEEFIDLCILLGCDY-CDSIRGIGPKRAIELIKEHRSIEKILENI 169
LE VL+ +S E+ I + IL+G DY ++GIG KRA+EL+K+++ E + +
Sbjct: 209 ELIELESVLKRNGISREQLIMIGILVGTDYNLGGVKGIGVKRALELVKKYKRPEDLFSKV 268
Score = 77.8 bits (190), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 41/95 (43%), Positives = 59/95 (62%), Gaps = 1/95 (1%)
Query: 317 SRKICIDASMSLYQFLIAVR-SEGNQLMSVDGEPTSHLMGTFYRTIRLVEHGLKPIYVFD 375
+KI +DA ++YQFL VR +G LM+ GE TS G FYRT ++ G+ PIYVFD
Sbjct: 22 GKKIALDAFNAMYQFLAKVRQPDGTPLMTSKGEITSVHSGIFYRTANFLKEGIIPIYVFD 81
Query: 376 GKPPTLKSGELNKRMEKREDAQKALAKAQEQGKLK 410
G+ P+ KS + +R+ RE+A+ +A E G L+
Sbjct: 82 GEKPSFKSRAIEERVRAREEAELKWKEALEIGDLE 116
>gi|240103256|ref|YP_002959565.1| flap endonuclease-1 [Thermococcus gammatolerans EJ3]
gi|259645974|sp|C5A639.1|FEN_THEGJ RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|239910810|gb|ACS33701.1| Flap structure-specific endonuclease (fen) [Thermococcus
gammatolerans EJ3]
Length = 339
Score = 89.4 bits (220), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 52/148 (35%), Positives = 84/148 (56%), Gaps = 20/148 (13%)
Query: 60 KAPCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFH----- 114
+AP E EAQ A M +VYA+A++D D+L FG+ L+R++T + RKLP + +
Sbjct: 148 QAPSEGEAQAAYMAAKKRVYASASQDYDSLLFGAPRLVRNLTITGRRKLPGKNVYVEVKP 207
Query: 115 ----LEKVLEGMELSHEEFIDLCILLGCDYC-DSIRGIGPKRAIELIKEHRS-IEKILEN 168
LE+VL + + E+ I+L IL+G DY I+GIGPK+A+ ++K + ++K ++
Sbjct: 208 ELIVLEEVLRELGIDREKLIELAILVGTDYNPGGIKGIGPKKALTIVKRSKDPLKKYQKD 267
Query: 169 IDTKKYTVPEGWLYKEARELFRHPEVAD 196
D Y + +E F +P V D
Sbjct: 268 SDVDLYAI---------KEFFLNPPVTD 286
Score = 80.9 bits (198), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 47/94 (50%), Positives = 63/94 (67%), Gaps = 1/94 (1%)
Query: 317 SRKICIDASMSLYQFLIAVRS-EGNQLMSVDGEPTSHLMGTFYRTIRLVEHGLKPIYVFD 375
+K+ IDA ++YQFL +R +G LM G TSHL G FYRTI L+E G+KP YVFD
Sbjct: 21 GKKVAIDAFNAMYQFLSTIRQRDGTPLMDSKGRITSHLSGFFYRTINLMEAGIKPAYVFD 80
Query: 376 GKPPTLKSGELNKRMEKREDAQKALAKAQEQGKL 409
G+PP K EL KR E RE+A++ +A E+G++
Sbjct: 81 GEPPAFKKKELEKRREAREEAEEKWHEALERGEI 114
Score = 55.5 bits (132), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 22/49 (44%), Positives = 38/49 (77%)
Query: 3 LKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSSTTQGRLDSFF 51
LKW +PDE+G++K+LC + +F+E+R++NG ++L KA + Q L+S+F
Sbjct: 290 LKWREPDEEGILKFLCDEHDFSEERVKNGLERLKKAVKAGKQRTLESWF 338
Score = 55.1 bits (131), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 22/49 (44%), Positives = 37/49 (75%)
Query: 409 LKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSTTTQGRLDSFF 457
LKW +PDE+G++K+LC + +F+E+R++NG ++L KA Q L+S+F
Sbjct: 290 LKWREPDEEGILKFLCDEHDFSEERVKNGLERLKKAVKAGKQRTLESWF 338
>gi|448305063|ref|ZP_21494997.1| flap endonuclease-1 [Natronorubrum sulfidifaciens JCM 14089]
gi|445589598|gb|ELY43826.1| flap endonuclease-1 [Natronorubrum sulfidifaciens JCM 14089]
Length = 325
Score = 89.4 bits (220), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 53/138 (38%), Positives = 72/138 (52%), Gaps = 12/138 (8%)
Query: 60 KAPCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVL 119
+AP E EAQ A M + G +ED DAL FG+ + LR +T +L LE L
Sbjct: 149 EAPAEGEAQAAHMARRGDADYVGSEDYDALLFGAPLTLRQLTSKGNPEL----MDLEATL 204
Query: 120 EGMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILE-NIDTKKYTVPE 178
E +L+ E+ ID IL+G D+ + + GIGPK AI I EH + +LE D+ +Y
Sbjct: 205 EHHDLTLEQLIDAAILIGTDFNNGVHGIGPKTAISEITEHGDLWSVLEARGDSVEYG--- 261
Query: 179 GWLYKEARELFRHPEVAD 196
R+LFR P V D
Sbjct: 262 ----DRVRQLFRDPNVTD 275
Score = 56.2 bits (134), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 48/90 (53%), Gaps = 2/90 (2%)
Query: 320 ICIDASMSLYQFLIAV--RSEGNQLMSVDGEPTSHLMGTFYRTIRLVEHGLKPIYVFDGK 377
+ +DA LY++L + ++ + DG ++L+G + EH + P+ VFDG
Sbjct: 24 VAVDAHNWLYRYLTTTVKWTNSSKYTTADGTEVANLVGIIQGLPKFFEHDITPVMVFDGG 83
Query: 378 PPTLKSGELNKRMEKREDAQKALAKAQEQG 407
P LK+ E+ R E+RE + L A+E+G
Sbjct: 84 PSELKADEIESRREQRETYEDQLEVAREEG 113
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 37/72 (51%), Gaps = 8/72 (11%)
Query: 229 LYSFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILE-NIDTKKYTVPEGWLYKE 287
L ID IL+G D+ + + GIGPK AI I EH + +LE D+ +Y
Sbjct: 211 LEQLIDAAILIGTDFNNGVHGIGPKTAISEITEHGDLWSVLEARGDSVEYG-------DR 263
Query: 288 ARELFRHPEIAD 299
R+LFR P + D
Sbjct: 264 VRQLFRDPNVTD 275
>gi|257053576|ref|YP_003131409.1| flap endonuclease-1 [Halorhabdus utahensis DSM 12940]
gi|256692339|gb|ACV12676.1| XPG I domain protein [Halorhabdus utahensis DSM 12940]
Length = 326
Score = 89.0 bits (219), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 55/145 (37%), Positives = 74/145 (51%), Gaps = 18/145 (12%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVLE 120
AP E EAQ A M + G V TED DAL FG+ LR +T S +L E L
Sbjct: 151 APAEGEAQAAHMARRGDVDYVGTEDYDALLFGAPFTLRQLTSSGDPEL----MDFEATLA 206
Query: 121 GMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGW 180
+LS E+ +D+ +L G D+ D +RG GPK A++ ++EH + + EN D
Sbjct: 207 EHDLSWEQLVDVALLCGTDFNDGVRGYGPKTAVKAVREHGDLWGVSENED---------- 256
Query: 181 LYKEA----RELFRHPEVADPETIE 201
+Y E RELF P V + TIE
Sbjct: 257 VYVENADRIRELFLDPAVTEEYTIE 281
Score = 53.5 bits (127), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 33/112 (29%), Positives = 55/112 (49%), Gaps = 3/112 (2%)
Query: 298 ADPETIELVADVAPSSIRESRKICIDASMSLYQFLIAVRSEGNQLM--SVDGEPTSHLMG 355
AD I ++ DV+ + E + +DA LY++L N + + DG ++L+G
Sbjct: 4 ADLRDIAVIEDVS-FDVLEGSVVAVDAHNWLYRYLTTTVKWTNDDIYTTADGTEVANLVG 62
Query: 356 TFYRTIRLVEHGLKPIYVFDGKPPTLKSGELNKRMEKREDAQKALAKAQEQG 407
+ E + P++VFDG LK E+ +R E+RE + L A+E G
Sbjct: 63 VVQGLPKFFEADVTPVFVFDGAVTDLKDDEVQRRREQREQYEDQLEDAREAG 114
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/99 (31%), Positives = 50/99 (50%), Gaps = 16/99 (16%)
Query: 232 FIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGWLYKEA--- 288
+D+ +L G D+ D +RG GPK A++ ++EH + + EN D +Y E
Sbjct: 215 LVDVALLCGTDFNDGVRGYGPKTAVKAVREHGDLWGVSENED----------VYVENADR 264
Query: 289 -RELFRHPEIADPETIELVADVAPSSIRE--SRKICIDA 324
RELF P + + TIE D ++ RE + + +DA
Sbjct: 265 IRELFLDPAVTEEYTIETSIDPDLAAAREFVTDQWAVDA 303
>gi|433592003|ref|YP_007281499.1| flap structure-specific endonuclease [Natrinema pellirubrum DSM
15624]
gi|448334339|ref|ZP_21523517.1| flap endonuclease-1 [Natrinema pellirubrum DSM 15624]
gi|433306783|gb|AGB32595.1| flap structure-specific endonuclease [Natrinema pellirubrum DSM
15624]
gi|445620225|gb|ELY73731.1| flap endonuclease-1 [Natrinema pellirubrum DSM 15624]
Length = 325
Score = 89.0 bits (219), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 53/137 (38%), Positives = 72/137 (52%), Gaps = 10/137 (7%)
Query: 60 KAPCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVL 119
+AP E EAQ A MVK G +ED DAL FG+ + LR +T +L L L
Sbjct: 149 EAPAEGEAQAAHMVKHGDADYVGSEDYDALLFGAPLTLRQLTSKGDPEL----MDLAATL 204
Query: 120 EGMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEG 179
+ +L+ E+ ID IL+G D+ D + GIGPK A+ I EH + +LE + V G
Sbjct: 205 KRHDLTLEQLIDAAILIGTDFNDGVSGIGPKTALSAIAEHGDLWSVLE---ARGDHVEHG 261
Query: 180 WLYKEARELFRHPEVAD 196
R+LFR P+V D
Sbjct: 262 ---DRVRQLFRDPDVTD 275
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 47/90 (52%), Gaps = 2/90 (2%)
Query: 320 ICIDASMSLYQFLIAV--RSEGNQLMSVDGEPTSHLMGTFYRTIRLVEHGLKPIYVFDGK 377
+ +DA LY++L ++ + + DG ++L+G + EH + P+ VFDG
Sbjct: 24 VAVDAHNWLYRYLTTTVKWTDSAKYTTADGTEVANLVGIVQGLPKFFEHDITPVMVFDGG 83
Query: 378 PPTLKSGELNKRMEKREDAQKALAKAQEQG 407
P LK E+ R E+R ++ L A+E+G
Sbjct: 84 PSELKDDEIESRREQRRSYEEQLETAREEG 113
Score = 52.0 bits (123), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 29/77 (37%), Positives = 39/77 (50%), Gaps = 6/77 (7%)
Query: 223 KRAIELLYSFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEG 282
KR L ID IL+G D+ D + GIGPK A+ I EH + +LE + V G
Sbjct: 205 KRHDLTLEQLIDAAILIGTDFNDGVSGIGPKTALSAIAEHGDLWSVLE---ARGDHVEHG 261
Query: 283 WLYKEARELFRHPEIAD 299
R+LFR P++ D
Sbjct: 262 ---DRVRQLFRDPDVTD 275
>gi|424811751|ref|ZP_18236997.1| flap structure-specific endonuclease [Candidatus Nanosalinarum sp.
J07AB56]
gi|339757159|gb|EGQ40741.1| flap structure-specific endonuclease [Candidatus Nanosalinarum sp.
J07AB56]
Length = 340
Score = 89.0 bits (219), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 44/93 (47%), Positives = 61/93 (65%), Gaps = 1/93 (1%)
Query: 318 RKICIDASMSLYQFLIAVRS-EGNQLMSVDGEPTSHLMGTFYRTIRLVEHGLKPIYVFDG 376
R + +DA LYQFL +R +G L DG TSHL G FYRT +L++ ++P+YVFDG
Sbjct: 22 RVLAVDAMNVLYQFLSIIRQRDGTPLKDSDGNITSHLSGLFYRTTKLLDSNIRPVYVFDG 81
Query: 377 KPPTLKSGELNKRMEKREDAQKALAKAQEQGKL 409
+ P LK+ E +R EKRE+AQK K +E+G +
Sbjct: 82 EMPDLKATEAAQRREKREEAQKEWEKLKEEGDV 114
Score = 82.4 bits (202), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 39/115 (33%), Positives = 68/115 (59%), Gaps = 9/115 (7%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTF--------SEARKLPVQE 112
AP E EAQ A M G VY ++D D+L FG+ +++++T +R + +
Sbjct: 149 APSEGEAQAARMAANGNVYGVGSQDWDSLLFGAERMVKNLTSRKKRSNRDGSSRTISTEL 208
Query: 113 FHLEKVLEGMELSHEEFIDLCILLGCDYC-DSIRGIGPKRAIELIKEHRSIEKIL 166
LE VL+ + LS E + + +L+G D+ D I G+GPK A++L++ ++S+E++L
Sbjct: 209 IRLEHVLDNLGLSRRELVWMGMLVGTDFNPDGIYGVGPKTALKLVRRNQSLEEVL 263
>gi|448358107|ref|ZP_21546792.1| flap endonuclease-1 [Natrialba chahannaoensis JCM 10990]
gi|445646678|gb|ELY99662.1| flap endonuclease-1 [Natrialba chahannaoensis JCM 10990]
Length = 325
Score = 89.0 bits (219), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 54/137 (39%), Positives = 71/137 (51%), Gaps = 10/137 (7%)
Query: 60 KAPCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVL 119
+AP E EAQ A MV+ G +ED DAL FGS LR +T +L LE L
Sbjct: 149 EAPAEGEAQAAHMVRRGDADYVGSEDYDALLFGSPYTLRQLTSKGDPEL----MDLEATL 204
Query: 120 EGMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEG 179
+ +L+ E+ ID IL+G D+ + I GIGPK A+ I EH + +LE + T+ G
Sbjct: 205 DHHDLTLEQLIDAAILIGTDFNEGISGIGPKTALSAISEHGDLWSVLE---ARGETLEYG 261
Query: 180 WLYKEARELFRHPEVAD 196
R LFR P V D
Sbjct: 262 ---DRVRALFREPNVTD 275
Score = 51.6 bits (122), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 47/90 (52%), Gaps = 2/90 (2%)
Query: 320 ICIDASMSLYQFLIAV--RSEGNQLMSVDGEPTSHLMGTFYRTIRLVEHGLKPIYVFDGK 377
+ +DA LY++L + ++ + DG ++L+G + E+ + P+ VFDG
Sbjct: 24 VAVDAHNWLYRYLTTTVKWTNSSKYTTTDGTEVANLIGIVQGLPKFFENDVTPVMVFDGG 83
Query: 378 PPTLKSGELNKRMEKREDAQKALAKAQEQG 407
P LK E+ R E+R+ + L A+E+G
Sbjct: 84 PSELKEDEIESRREQRQTYEAQLETAREEG 113
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/88 (35%), Positives = 41/88 (46%), Gaps = 6/88 (6%)
Query: 229 LYSFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGWLYKEA 288
L ID IL+G D+ + I GIGPK A+ I EH + +LE + T+ G
Sbjct: 211 LEQLIDAAILIGTDFNEGISGIGPKTALSAISEHGDLWSVLE---ARGETLEYG---DRV 264
Query: 289 RELFRHPEIADPETIELVADVAPSSIRE 316
R LFR P + D E D + RE
Sbjct: 265 RALFREPNVTDEYEFETTLDPDMEAARE 292
>gi|300711017|ref|YP_003736831.1| flap endonuclease-1 [Halalkalicoccus jeotgali B3]
gi|448296888|ref|ZP_21486938.1| flap endonuclease-1 [Halalkalicoccus jeotgali B3]
gi|299124700|gb|ADJ15039.1| flap endonuclease-1 [Halalkalicoccus jeotgali B3]
gi|445580565|gb|ELY34943.1| flap endonuclease-1 [Halalkalicoccus jeotgali B3]
Length = 325
Score = 89.0 bits (219), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 52/137 (37%), Positives = 73/137 (53%), Gaps = 10/137 (7%)
Query: 60 KAPCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVL 119
+AP E EAQ A M K+ V TED DAL FG+ + LR +T K + L L
Sbjct: 150 EAPTEGEAQAAHMAKSADVDYAGTEDYDALLFGAPLTLRQLT----SKGDPECMDLAATL 205
Query: 120 EGMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEG 179
EL+HE+ +D+ IL G D+ + + G+GPK A++ I EH + +L D + V E
Sbjct: 206 AAHELTHEQLVDVGILCGTDFNEGVHGMGPKTAVKAIHEHGDLAGVL---DARDAVVGE- 261
Query: 180 WLYKEARELFRHPEVAD 196
+ RELF P+V D
Sbjct: 262 --MEAVRELFLQPDVTD 276
Score = 47.8 bits (112), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 37/68 (54%), Gaps = 6/68 (8%)
Query: 232 FIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGWLYKEAREL 291
+D+ IL G D+ + + G+GPK A++ I EH + +L D + V E + REL
Sbjct: 215 LVDVGILCGTDFNEGVHGMGPKTAVKAIHEHGDLAGVL---DARDAVVGE---MEAVREL 268
Query: 292 FRHPEIAD 299
F P++ D
Sbjct: 269 FLQPDVTD 276
>gi|329764928|ref|ZP_08256517.1| flap endonuclease-1 [Candidatus Nitrosoarchaeum limnia SFB1]
gi|329138597|gb|EGG42844.1| flap endonuclease-1 [Candidatus Nitrosoarchaeum limnia SFB1]
Length = 339
Score = 89.0 bits (219), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 47/113 (41%), Positives = 71/113 (62%), Gaps = 8/113 (7%)
Query: 317 SRKICIDASMSLYQFLIAVRS-EGNQLMSVDGEPTSHLMGTFYRTIRLVEHGLKPIYVFD 375
S+ I IDA ++YQFL ++R +G QL +G TSHL G YR I + G+KP+YVFD
Sbjct: 21 SKVIAIDAYNAIYQFLASIRGPDGLQLSDSEGRITSHLSGLLYRNINFLSLGIKPVYVFD 80
Query: 376 GKPPTLKSGELNKRMEKREDA----QKALAKAQEQGKLKWSDPD---EDGLVK 421
GKPP+LK+ E+ +R + ++DA +KA+A + K++ +DG+VK
Sbjct: 81 GKPPSLKTAEIERRKQIKKDATVKYEKAIAAGNMEDARKFAQQTTSMKDGMVK 133
Score = 84.3 bits (207), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 49/155 (31%), Positives = 86/155 (55%), Gaps = 21/155 (13%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLE---- 116
AP E EA A + G+ YA+A++D D++ G+ L+R+ T S RK+P + ++E
Sbjct: 149 APSEGEAMAAHLTNTGQAYASASQDFDSILCGAKRLIRNFTNSGRRKIPNRNTYVEIEPE 208
Query: 117 -----KVLEGMELSHEEFIDLCILLGCDYC-DSIRGIGPKRAIELIKEHRSIEKILENID 170
K L+ + ++ E+ +D+ IL+G D+ + IGPK A+++IK+H +E I +
Sbjct: 209 IIETQKTLDALGVTREQLVDIGILIGTDFNPNGFDRIGPKTALKMIKQHSRLEDIPQ--- 265
Query: 171 TKKYTVPEGWL---YKEARELFRHPEVADPETIEF 202
+ E L Y++ R++F P VA+ + I F
Sbjct: 266 -----IQEQLLEIDYQQIRKIFLEPIVAEVDEIVF 295
>gi|73668744|ref|YP_304759.1| flap endonuclease-1 [Methanosarcina barkeri str. Fusaro]
gi|121723542|sp|Q46D63.1|FEN_METBF RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|72395906|gb|AAZ70179.1| flap endonuclease 1 [Methanosarcina barkeri str. Fusaro]
Length = 338
Score = 89.0 bits (219), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 43/91 (47%), Positives = 61/91 (67%), Gaps = 1/91 (1%)
Query: 320 ICIDASMSLYQFLIAVRS-EGNQLMSVDGEPTSHLMGTFYRTIRLVEHGLKPIYVFDGKP 378
+ IDA +L+QFL +R +GN L++ G+ TSHL G YRT L+E G+KP+++FDGKP
Sbjct: 24 VAIDAFNTLHQFLSIIRQRDGNPLVNSRGKVTSHLSGLLYRTASLIEVGIKPVFIFDGKP 83
Query: 379 PTLKSGELNKRMEKREDAQKALAKAQEQGKL 409
P LKS LN+R E RE + + A+ +G L
Sbjct: 84 PDLKSETLNRRKEVRESSLEKWENAKVEGDL 114
Score = 81.6 bits (200), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 49/152 (32%), Positives = 80/152 (52%), Gaps = 15/152 (9%)
Query: 60 KAPCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVL 119
+APCE EAQ A MV A++D D+ FG+ ++R++ + RKLP + +++ L
Sbjct: 148 QAPCEGEAQAAHMVLKKDADYVASQDYDSFLFGAPTVIRNLAVTGKRKLPGKHVYVDVEL 207
Query: 120 EG---------MELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENID 170
E + ++ E+ ID+ I +G D+ + +GPK A++LIK+H I +L
Sbjct: 208 ELIELEETLGVLGINREQLIDIAICVGTDFNKGLEKVGPKTALKLIKKHGDIHAVLRE-- 265
Query: 171 TKKYTVPEGWLYKEARELFRHPEVADPETIEF 202
K + E RELF HP+V D I++
Sbjct: 266 -KGVEIKE---LDRIRELFTHPDVTDDYEIKW 293
Score = 46.2 bits (108), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 36/68 (52%), Gaps = 6/68 (8%)
Query: 232 FIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGWLYKEAREL 291
ID+ I +G D+ + +GPK A++LIK+H I +L K + E REL
Sbjct: 226 LIDIAICVGTDFNKGLEKVGPKTALKLIKKHGDIHAVLRE---KGVEIKE---LDRIREL 279
Query: 292 FRHPEIAD 299
F HP++ D
Sbjct: 280 FTHPDVTD 287
Score = 41.2 bits (95), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 30/49 (61%), Gaps = 1/49 (2%)
Query: 3 LKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSSTTQGRLDSFF 51
+KW PD + L+K+LC + +F+ DR++ ++ LK S Q LD +F
Sbjct: 291 IKWGKPDSEKLIKFLCKENDFSVDRVKKAVER-LKVVSRGRQQTLDQWF 338
Score = 40.8 bits (94), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 30/49 (61%), Gaps = 1/49 (2%)
Query: 409 LKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSTTTQGRLDSFF 457
+KW PD + L+K+LC + +F+ DR++ ++ LK S Q LD +F
Sbjct: 291 IKWGKPDSEKLIKFLCKENDFSVDRVKKAVER-LKVVSRGRQQTLDQWF 338
>gi|393795424|ref|ZP_10378788.1| flap endonuclease-1 [Candidatus Nitrosoarchaeum limnia BG20]
Length = 339
Score = 89.0 bits (219), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 47/113 (41%), Positives = 71/113 (62%), Gaps = 8/113 (7%)
Query: 317 SRKICIDASMSLYQFLIAVRS-EGNQLMSVDGEPTSHLMGTFYRTIRLVEHGLKPIYVFD 375
S+ I IDA ++YQFL ++R +G QL +G TSHL G YR I + G+KP+YVFD
Sbjct: 21 SKVIAIDAYNAIYQFLASIRGPDGLQLSDSEGRITSHLSGLLYRNINFLSLGIKPVYVFD 80
Query: 376 GKPPTLKSGELNKRMEKREDA----QKALAKAQEQGKLKWSDPD---EDGLVK 421
GKPP+LK+ E+ +R + ++DA +KA+A + K++ +DG+VK
Sbjct: 81 GKPPSLKTAEIERRKQIKKDATVKYEKAIAAGNMEDARKFAQQTTSMKDGMVK 133
Score = 84.7 bits (208), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 50/158 (31%), Positives = 86/158 (54%), Gaps = 27/158 (17%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLE---- 116
AP E EA A + G+ YA+A++D D++ G+ L+R+ T S RK+P + ++E
Sbjct: 149 APSEGEAMAAHLTNTGQAYASASQDFDSILCGAKRLIRNFTNSGRRKIPNRNTYVEIEPE 208
Query: 117 -----KVLEGMELSHEEFIDLCILLGCDYC-DSIRGIGPKRAIELIKEHRSIEKI----- 165
K L+ + ++ E+ +D+ IL+G D+ + IGPK A+++IK+H +E I
Sbjct: 209 IIETQKTLDALGVTREQLVDIGILIGTDFNPNGFDRIGPKTALKMIKQHSCLEDIPQIQE 268
Query: 166 -LENIDTKKYTVPEGWLYKEARELFRHPEVADPETIEF 202
L+ ID Y++ R++F P VA+ + I F
Sbjct: 269 QLQEID-----------YQQIRKIFLEPIVAEVDEIVF 295
>gi|223477291|ref|YP_002581507.1| Flap structure-specific endonuclease [Thermococcus sp. AM4]
gi|214032517|gb|EEB73347.1| Flap structure-specific endonuclease [Thermococcus sp. AM4]
Length = 339
Score = 89.0 bits (219), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 53/148 (35%), Positives = 83/148 (56%), Gaps = 20/148 (13%)
Query: 60 KAPCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFH----- 114
+AP E EAQ A M KVYA+A++D D+L FG+ L+R++T + RKLP + +
Sbjct: 148 QAPSEGEAQAAYMASKKKVYASASQDYDSLLFGAPRLVRNLTITGRRKLPGKNVYVEVKP 207
Query: 115 ----LEKVLEGMELSHEEFIDLCILLGCDYC-DSIRGIGPKRAIELIKEHRS-IEKILEN 168
LE+VL+ + + E+ I+L IL+G DY I+GIGPK+A+ ++K + + K +
Sbjct: 208 ELIILEEVLKELGIDREKLIELAILVGTDYNPGGIKGIGPKKALTIVKRSKDPLAKYQKM 267
Query: 169 IDTKKYTVPEGWLYKEARELFRHPEVAD 196
D Y + +E F +P V D
Sbjct: 268 SDVDLYAI---------KEFFLNPPVTD 286
Score = 76.6 bits (187), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 35/66 (53%), Positives = 44/66 (66%), Gaps = 1/66 (1%)
Query: 317 SRKICIDASMSLYQFLIAVRS-EGNQLMSVDGEPTSHLMGTFYRTIRLVEHGLKPIYVFD 375
+K+ IDA ++YQFL +R +G LM G TSHL G FYRTI L+E G+KP YVFD
Sbjct: 21 GKKVAIDAFNAMYQFLSTIRQRDGTPLMDSKGRITSHLSGFFYRTINLMEAGIKPAYVFD 80
Query: 376 GKPPTL 381
G+PP
Sbjct: 81 GEPPAF 86
Score = 55.1 bits (131), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 21/49 (42%), Positives = 38/49 (77%)
Query: 3 LKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSSTTQGRLDSFF 51
LKW +PDE+G++++LC + +F+E+R++NG ++L KA + Q L+S+F
Sbjct: 290 LKWREPDEEGIIRFLCDEHDFSEERVKNGLERLKKAIKAGKQRTLESWF 338
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 21/49 (42%), Positives = 37/49 (75%)
Query: 409 LKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSTTTQGRLDSFF 457
LKW +PDE+G++++LC + +F+E+R++NG ++L KA Q L+S+F
Sbjct: 290 LKWREPDEEGIIRFLCDEHDFSEERVKNGLERLKKAIKAGKQRTLESWF 338
>gi|448344743|ref|ZP_21533645.1| flap endonuclease-1 [Natrinema altunense JCM 12890]
gi|445636849|gb|ELY90006.1| flap endonuclease-1 [Natrinema altunense JCM 12890]
Length = 325
Score = 89.0 bits (219), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 54/137 (39%), Positives = 71/137 (51%), Gaps = 10/137 (7%)
Query: 60 KAPCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVL 119
+AP E EAQ A MVK G +ED DAL FG+ + LR +T +L LE L
Sbjct: 149 EAPAEGEAQAAHMVKRGDADYVGSEDYDALLFGAPLTLRQLTSKGDPEL----MDLEATL 204
Query: 120 EGMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEG 179
+L+ E+ ID IL+G D+ + + GIGPK AI I EH + LE + V G
Sbjct: 205 AQHDLTLEQLIDAAILIGTDFNEGVSGIGPKTAISAITEHGDLWSALE---ARGDHVEHG 261
Query: 180 WLYKEARELFRHPEVAD 196
R+LFR P+V D
Sbjct: 262 ---DRVRQLFRDPDVTD 275
Score = 55.1 bits (131), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 48/90 (53%), Gaps = 2/90 (2%)
Query: 320 ICIDASMSLYQFLIAV--RSEGNQLMSVDGEPTSHLMGTFYRTIRLVEHGLKPIYVFDGK 377
+ +DA LY++L ++ ++ + DG ++L+G + EH + P+ VFDG
Sbjct: 24 VAVDAHNWLYRYLTTTVKWTDSSKYTTADGTEVANLVGIVQGLPKFFEHDITPVMVFDGG 83
Query: 378 PPTLKSGELNKRMEKREDAQKALAKAQEQG 407
P LK E+ R E+R ++ L A+E+G
Sbjct: 84 PSDLKDDEIESRREQRRSYEEQLETAREEG 113
Score = 49.7 bits (117), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 36/71 (50%), Gaps = 6/71 (8%)
Query: 229 LYSFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGWLYKEA 288
L ID IL+G D+ + + GIGPK AI I EH + LE + V G
Sbjct: 211 LEQLIDAAILIGTDFNEGVSGIGPKTAISAITEHGDLWSALE---ARGDHVEHG---DRV 264
Query: 289 RELFRHPEIAD 299
R+LFR P++ D
Sbjct: 265 RQLFRDPDVTD 275
>gi|193084327|gb|ACF09984.1| XPG I flap structure-specific endonuclease [uncultured marine
crenarchaeote SAT1000-49-D2]
Length = 341
Score = 89.0 bits (219), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 59/182 (32%), Positives = 93/182 (51%), Gaps = 27/182 (14%)
Query: 60 KAPCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLE--- 116
+A + EA A M K GK YA A++D D++ FG+ L+R+ T S RKLP + +++
Sbjct: 148 QANADGEATAAHMNKTGKAYAVASQDYDSILFGAKKLVRNFTNSGRRKLPNRNTYVDIEP 207
Query: 117 ------KVLEGMELSHEEFIDLCILLGCDYC-DSIRGIGPKRAIELIKEHRSIEKI---- 165
K L+ + ++ E+ ID+ IL+G D+ D IGPK A+++IKE+ +E I
Sbjct: 208 EIISYQKSLDALGITGEQIIDIGILIGTDFNPDGFDRIGPKTALKMIKEYGKLEDIPKIQ 267
Query: 166 --LENIDTKKYTVPEGWLYKEARELFRHPEVADPETIEFIDLCILLGCDYCDSIRGIGPK 223
LE ID Y++ R++F ++ D IEF D DY + R +
Sbjct: 268 EQLEQID-----------YEQIRKIFLQTDMPDIGKIEFKDTDYSGIVDYLANERSFSQE 316
Query: 224 RA 225
R
Sbjct: 317 RV 318
Score = 79.3 bits (194), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 38/92 (41%), Positives = 56/92 (60%), Gaps = 1/92 (1%)
Query: 317 SRKICIDASMSLYQFLIAVRS-EGNQLMSVDGEPTSHLMGTFYRTIRLVEHGLKPIYVFD 375
S+ I +DA ++YQFL +R EG L G TSHL G +R + + G+KP+YVFD
Sbjct: 21 SKIIAVDAYNAIYQFLAIIRGPEGLHLTDNRGRVTSHLTGLLHRNVNFLSIGIKPVYVFD 80
Query: 376 GKPPTLKSGELNKRMEKREDAQKALAKAQEQG 407
GKPP+LK+ E+ +R +++A KA+ G
Sbjct: 81 GKPPSLKTAEIQRRKLGKKEATIKYEKAKASG 112
>gi|11497880|ref|NP_069102.1| flap endonuclease-1 [Archaeoglobus fulgidus DSM 4304]
gi|28380012|sp|O29975.1|FEN_ARCFU RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|42543625|pdb|1RXV|A Chain A, Crystal Structure Of A. Fulgidus Fen-1 Bound To Dna
gi|42543626|pdb|1RXV|B Chain B, Crystal Structure Of A. Fulgidus Fen-1 Bound To Dna
gi|42543629|pdb|1RXW|A Chain A, Crystal Structure Of A. Fulgidus Fen-1 Bound To Dna
gi|2650376|gb|AAB90967.1| DNA repair protein RAD2 (rad2) [Archaeoglobus fulgidus DSM 4304]
Length = 336
Score = 88.6 bits (218), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 54/155 (34%), Positives = 81/155 (52%), Gaps = 23/155 (14%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFH------ 114
AP E EAQ A M G V T ++D D+L FGS L R++ + RKLP + +
Sbjct: 148 APSEGEAQAAYMAAKGDVEYTGSQDYDSLLFGSPRLARNLAITGKRKLPGKNVYVDVKPE 207
Query: 115 ---LEKVLEGMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEH----RSIEKILE 167
LE L+ + L+ E+ ID+ IL+G DY + ++G+G K+A+ IK + R+++ +
Sbjct: 208 IIILESNLKRLGLTREQLIDIAILVGTDYNEGVKGVGVKKALNYIKTYGDIFRALKALKV 267
Query: 168 NIDTKKYTVPEGWLYKEARELFRHPEVADPETIEF 202
NID +E R F +P V D IEF
Sbjct: 268 NIDH----------VEEIRNFFLNPPVTDDYRIEF 292
Score = 78.2 bits (191), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 36/92 (39%), Positives = 56/92 (60%), Gaps = 1/92 (1%)
Query: 317 SRKICIDASMSLYQFLIAVR-SEGNQLMSVDGEPTSHLMGTFYRTIRLVEHGLKPIYVFD 375
+KI +DA +LYQF+ +R +G L G TSHL G YR +VE G++P++VFD
Sbjct: 21 GKKIAVDAFNTLYQFISIIRQPDGTPLKDSQGRITSHLSGILYRVSNMVEVGIRPVFVFD 80
Query: 376 GKPPTLKSGELNKRMEKREDAQKALAKAQEQG 407
G+PP K E+ +R ++R +A++ A + G
Sbjct: 81 GEPPEFKKAEIEERKKRRAEAEEMWIAALQAG 112
Score = 43.5 bits (101), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 40/78 (51%), Gaps = 14/78 (17%)
Query: 232 FIDLCILLGCDYCDSIRGIGPKRAIELIKEH----RSIEKILENIDTKKYTVPEGWLYKE 287
ID+ IL+G DY + ++G+G K+A+ IK + R+++ + NID +E
Sbjct: 225 LIDIAILVGTDYNEGVKGVGVKKALNYIKTYGDIFRALKALKVNIDH----------VEE 274
Query: 288 ARELFRHPEIADPETIEL 305
R F +P + D IE
Sbjct: 275 IRNFFLNPPVTDDYRIEF 292
>gi|304313993|ref|YP_003849140.1| flap structure-specific endonuclease [Methanothermobacter
marburgensis str. Marburg]
gi|302587452|gb|ADL57827.1| flap structure-specific endonuclease [Methanothermobacter
marburgensis str. Marburg]
Length = 328
Score = 88.2 bits (217), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 47/135 (34%), Positives = 78/135 (57%), Gaps = 6/135 (4%)
Query: 60 KAPCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVL 119
+AP E EAQ + +V+ G +A A++D D L FG+ ++R++T S + + LE L
Sbjct: 148 QAPGEGEAQASFIVRRGDAWAVASQDYDCLLFGAPRVVRNLTLS-GKLEEPEIIELESAL 206
Query: 120 EGMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEG 179
+ ++HE+ +DL +L+G D+ D I+GIG +R ++LIKE + ++E ID PE
Sbjct: 207 RNLSITHEQLVDLALLVGTDFNDGIKGIGARRGLKLIKEKGDVFSVIEEIDGDIGGDPE- 265
Query: 180 WLYKEARELFRHPEV 194
R +F P+V
Sbjct: 266 ----VLRGIFLEPDV 276
Score = 73.2 bits (178), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 36/95 (37%), Positives = 58/95 (61%), Gaps = 1/95 (1%)
Query: 317 SRKICIDASMSLYQFLIAVRS-EGNQLMSVDGEPTSHLMGTFYRTIRLVEHGLKPIYVFD 375
R + +DA+ S+YQFL ++R +G LM +G TSHL G YRT ++E ++ YVFD
Sbjct: 21 GRTVAVDAANSIYQFLSSIRQRDGTPLMDSEGRVTSHLSGILYRTAAVMERDIRMAYVFD 80
Query: 376 GKPPTLKSGELNKRMEKREDAQKALAKAQEQGKLK 410
GK LK + +R+E R+ ++ +A E+G ++
Sbjct: 81 GKSHHLKGETVTRRIETRKKSEVEWRRALEEGDIE 115
Score = 48.9 bits (115), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 37/66 (56%), Gaps = 5/66 (7%)
Query: 232 FIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGWLYKEAREL 291
+DL +L+G D+ D I+GIG +R ++LIKE + ++E ID PE R +
Sbjct: 216 LVDLALLVGTDFNDGIKGIGARRGLKLIKEKGDVFSVIEEIDGDIGGDPE-----VLRGI 270
Query: 292 FRHPEI 297
F P++
Sbjct: 271 FLEPDV 276
Score = 44.3 bits (103), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 31/49 (63%), Gaps = 2/49 (4%)
Query: 3 LKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSSTTQGRLDSFF 51
L+W PD DG++ +LCG+ F+E+R+ KK+ A S TQ L+ +F
Sbjct: 282 LRWRKPDRDGVIDFLCGEHGFSEERVMAALKKIEGA--SFTQKSLEDWF 328
Score = 43.5 bits (101), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 32/50 (64%), Gaps = 2/50 (4%)
Query: 408 KLKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSTTTQGRLDSFF 457
+L+W PD DG++ +LCG+ F+E+R+ KK+ A + TQ L+ +F
Sbjct: 281 ELRWRKPDRDGVIDFLCGEHGFSEERVMAALKKIEGA--SFTQKSLEDWF 328
>gi|84489880|ref|YP_448112.1| flap endonuclease-1 [Methanosphaera stadtmanae DSM 3091]
gi|121717163|sp|Q2NFD4.1|FEN_METST RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|84373199|gb|ABC57469.1| flap structure-specific endonuclease [Methanosphaera stadtmanae DSM
3091]
Length = 328
Score = 88.2 bits (217), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 46/143 (32%), Positives = 81/143 (56%), Gaps = 5/143 (3%)
Query: 60 KAPCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVL 119
+A E EAQ + MV +A ++D D L FG+ ++R++ S++ ++ LEK L
Sbjct: 148 QARTEGEAQASYMVSQNDAWAVVSQDYDCLQFGATRMIRNLKLSKSNSKNLELISLEKTL 207
Query: 120 EGMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEG 179
+ + L+ E+ +D+ +L+G D+ + GIG K+ I+LI ++ ++EK LE+++ E
Sbjct: 208 KELNLTREQLVDVAMLVGTDFNKGVYGIGAKKGIKLIHKYGTLEKALESLNETMEVDAE- 266
Query: 180 WLYKEARELFRHPEVADPETIEF 202
RE+F +P V TIEF
Sbjct: 267 ----LIREIFLNPNVVHNYTIEF 285
Score = 75.1 bits (183), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 40/116 (34%), Positives = 69/116 (59%), Gaps = 8/116 (6%)
Query: 293 RHPEIADPETIELVADVAPSSIRESRKICIDASMSLYQFLIAVR-SEGNQLMSVDGEPTS 351
+ +I +PE IE+ E + + +DAS +Y+FL ++R ++G L ++G TS
Sbjct: 4 KFKDITNPEPIEMKE-------LEGKILTVDASNVIYKFLSSMRQTDGTPLRDLNGHITS 56
Query: 352 HLMGTFYRTIRLVEHGLKPIYVFDGKPPTLKSGELNKRMEKREDAQKALAKAQEQG 407
HL G ++T L+E +KP+YVFDGK P LK +R+ +++++K +A+E G
Sbjct: 57 HLNGIMFQTSTLIEKDIKPVYVFDGKAPDLKKETQEERINIKKESEKKYLEAKEVG 112
Score = 46.2 bits (108), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 41/74 (55%), Gaps = 5/74 (6%)
Query: 232 FIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGWLYKEAREL 291
+D+ +L+G D+ + GIG K+ I+LI ++ ++EK LE+++ E RE+
Sbjct: 217 LVDVAMLVGTDFNKGVYGIGAKKGIKLIHKYGTLEKALESLNETMEVDAE-----LIREI 271
Query: 292 FRHPEIADPETIEL 305
F +P + TIE
Sbjct: 272 FLNPNVVHNYTIEF 285
>gi|448382773|ref|ZP_21562268.1| flap endonuclease-1 [Haloterrigena thermotolerans DSM 11522]
gi|445661242|gb|ELZ14033.1| flap endonuclease-1 [Haloterrigena thermotolerans DSM 11522]
Length = 325
Score = 88.2 bits (217), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 53/137 (38%), Positives = 71/137 (51%), Gaps = 10/137 (7%)
Query: 60 KAPCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVL 119
+AP E EAQ A MVK G +ED DAL FG+ + LR +T +L L L
Sbjct: 149 EAPAEGEAQAAHMVKRGDADYVGSEDYDALLFGAPLTLRQLTSKGDPEL----MDLAATL 204
Query: 120 EGMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEG 179
+ +L+ E+ ID IL+G D+ D + GIGPK A+ I EH + +LE + V G
Sbjct: 205 KRHDLTLEQLIDAAILIGTDFNDGVSGIGPKTALSAIAEHGDLWTVLE---ARGDHVEHG 261
Query: 180 WLYKEARELFRHPEVAD 196
R+LFR P V D
Sbjct: 262 ---DRVRQLFRDPNVTD 275
Score = 53.5 bits (127), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 46/90 (51%), Gaps = 2/90 (2%)
Query: 320 ICIDASMSLYQFLIAV--RSEGNQLMSVDGEPTSHLMGTFYRTIRLVEHGLKPIYVFDGK 377
+ +DA LY++L ++ + + DG ++L+G + EH + P+ VFDG
Sbjct: 24 VAVDAHNWLYRYLTTTVKWTDSAKYTTADGTEVANLVGIVQGLPKFFEHDITPVMVFDGG 83
Query: 378 PPTLKSGELNKRMEKREDAQKALAKAQEQG 407
P LK E+ R E+R + L A+E+G
Sbjct: 84 PSELKDDEIESRREQRRSYEAQLETAREEG 113
Score = 51.6 bits (122), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/77 (37%), Positives = 38/77 (49%), Gaps = 6/77 (7%)
Query: 223 KRAIELLYSFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEG 282
KR L ID IL+G D+ D + GIGPK A+ I EH + +LE + V G
Sbjct: 205 KRHDLTLEQLIDAAILIGTDFNDGVSGIGPKTALSAIAEHGDLWTVLE---ARGDHVEHG 261
Query: 283 WLYKEARELFRHPEIAD 299
R+LFR P + D
Sbjct: 262 ---DRVRQLFRDPNVTD 275
>gi|433637770|ref|YP_007283530.1| flap structure-specific endonuclease [Halovivax ruber XH-70]
gi|433289574|gb|AGB15397.1| flap structure-specific endonuclease [Halovivax ruber XH-70]
Length = 326
Score = 88.2 bits (217), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 52/137 (37%), Positives = 73/137 (53%), Gaps = 10/137 (7%)
Query: 60 KAPCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVL 119
+AP E EAQ A +V+ G +ED DAL FGS LR +T +L L+ L
Sbjct: 150 EAPAEGEAQAANIVRNGDADYVGSEDYDALLFGSPRTLRQLTSKGDPEL----MDLQATL 205
Query: 120 EGMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEG 179
+ +L+ E+ ID+ I++G D+ D + GIGPK A+ LI EH + LE ++ V G
Sbjct: 206 DDHDLTLEQLIDVAIMIGTDFNDGVDGIGPKTALSLIHEHGDLWSALE---SRGDHVEYG 262
Query: 180 WLYKEARELFRHPEVAD 196
R+LFR P V D
Sbjct: 263 ---DRVRQLFRDPNVTD 276
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 49/94 (52%), Gaps = 2/94 (2%)
Query: 316 ESRKICIDASMSLYQFLIAVRSEGNQLM--SVDGEPTSHLMGTFYRTIRLVEHGLKPIYV 373
E + +DA LY++L N + + DG ++L+G + EH + P+ V
Sbjct: 21 EGSVVAVDAHNWLYRYLTTTVKWTNSSIYTTADGTEVANLVGMVQGLPKFFEHDIVPVMV 80
Query: 374 FDGKPPTLKSGELNKRMEKREDAQKALAKAQEQG 407
FDG P LK+ E+ R E+RE ++ L A+E+G
Sbjct: 81 FDGGPSELKTDEIESRREQRESYEEQLEVAREEG 114
Score = 52.4 bits (124), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 32/86 (37%), Positives = 45/86 (52%), Gaps = 8/86 (9%)
Query: 229 LYSFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGWLYKEA 288
L ID+ I++G D+ D + GIGPK A+ LI EH + LE ++ V G
Sbjct: 212 LEQLIDVAIMIGTDFNDGVDGIGPKTALSLIHEHGDLWSALE---SRGDHVEYG---DRV 265
Query: 289 RELFRHPEIADPE--TIELVADVAPS 312
R+LFR P + D T +L DVA +
Sbjct: 266 RQLFRDPNVTDDYEFTTDLDPDVAAA 291
>gi|212224248|ref|YP_002307484.1| flap endonuclease-1 [Thermococcus onnurineus NA1]
gi|226700956|sp|B6YWX4.1|FEN_THEON RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|212009205|gb|ACJ16587.1| flap structure-specific endonuclease [Thermococcus onnurineus NA1]
Length = 341
Score = 88.2 bits (217), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 51/148 (34%), Positives = 84/148 (56%), Gaps = 20/148 (13%)
Query: 60 KAPCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFH----- 114
+AP E EAQ A M KVYA+A++D D+L FG+ L+R++T + RKLP + +
Sbjct: 148 QAPSEGEAQAAYMAAKKKVYASASQDYDSLLFGAPKLVRNLTITGRRKLPGKNVYVEVKP 207
Query: 115 ----LEKVLEGMELSHEEFIDLCILLGCDYC-DSIRGIGPKRAIELIKEHRS-IEKILEN 168
LE+VL+ + + E+ I++ IL+G DY I+GIGPK+A+ ++K + ++K +
Sbjct: 208 ELIVLEEVLKELSIDREKLIEMAILVGTDYNPGGIKGIGPKKALTIVKRTKDPLKKYQKE 267
Query: 169 IDTKKYTVPEGWLYKEARELFRHPEVAD 196
+ Y + +E F +P V D
Sbjct: 268 SEVDLYAI---------KEFFLNPPVTD 286
Score = 79.7 bits (195), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 36/67 (53%), Positives = 45/67 (67%), Gaps = 1/67 (1%)
Query: 317 SRKICIDASMSLYQFLIAVRS-EGNQLMSVDGEPTSHLMGTFYRTIRLVEHGLKPIYVFD 375
R++ IDA ++YQFL +R +G LM G TSHL G FYRTI L+E G+KP Y+FD
Sbjct: 21 GRRVAIDAFNAIYQFLSTIRQRDGTPLMDSQGRITSHLSGLFYRTINLMEAGIKPAYIFD 80
Query: 376 GKPPTLK 382
GKPP K
Sbjct: 81 GKPPDFK 87
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 23/52 (44%), Positives = 39/52 (75%)
Query: 3 LKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSSTTQGRLDSFFTIR 54
LKW +PDE+G++K+LC + +F+E+R++NG ++L KA + Q L+S+F R
Sbjct: 290 LKWREPDEEGIIKFLCDEHDFSEERVKNGLERLKKAVKAGKQSTLESWFGRR 341
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 23/52 (44%), Positives = 38/52 (73%)
Query: 409 LKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSTTTQGRLDSFFTIR 460
LKW +PDE+G++K+LC + +F+E+R++NG ++L KA Q L+S+F R
Sbjct: 290 LKWREPDEEGIIKFLCDEHDFSEERVKNGLERLKKAVKAGKQSTLESWFGRR 341
>gi|448355812|ref|ZP_21544561.1| flap endonuclease-1 [Natrialba hulunbeirensis JCM 10989]
gi|445634520|gb|ELY87699.1| flap endonuclease-1 [Natrialba hulunbeirensis JCM 10989]
Length = 325
Score = 87.8 bits (216), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 54/137 (39%), Positives = 70/137 (51%), Gaps = 10/137 (7%)
Query: 60 KAPCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVL 119
+AP E EAQ A MV+ G +ED DAL FGS LR +T +L LE L
Sbjct: 149 EAPAEGEAQAAHMVRRGDADYVGSEDYDALLFGSPYTLRQLTSKGDPEL----MDLEATL 204
Query: 120 EGMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEG 179
+L+ E+ ID IL+G D+ + I GIGPK A+ I EH + +LE + T+ G
Sbjct: 205 AHHDLTLEQLIDAAILIGTDFNEGISGIGPKTALSAISEHGDLWSVLE---ARGETLEYG 261
Query: 180 WLYKEARELFRHPEVAD 196
R LFR P V D
Sbjct: 262 ---DRVRALFREPNVTD 275
Score = 52.0 bits (123), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 48/90 (53%), Gaps = 2/90 (2%)
Query: 320 ICIDASMSLYQFLIAV--RSEGNQLMSVDGEPTSHLMGTFYRTIRLVEHGLKPIYVFDGK 377
+ +DA LY++L + ++ + DG ++L+G + E+ + P+ VFDG
Sbjct: 24 VAVDAHNWLYRYLTTTVKWTSSSKYTTADGTEVANLLGIVQGLPKFFENDVTPVMVFDGG 83
Query: 378 PPTLKSGELNKRMEKREDAQKALAKAQEQG 407
P LK E+ R E+R+ ++ L A+E+G
Sbjct: 84 PSELKEDEIESRREQRQTYEEQLETAREEG 113
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/88 (35%), Positives = 42/88 (47%), Gaps = 6/88 (6%)
Query: 229 LYSFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGWLYKEA 288
L ID IL+G D+ + I GIGPK A+ I EH + +LE + T+ G
Sbjct: 211 LEQLIDAAILIGTDFNEGISGIGPKTALSAISEHGDLWSVLE---ARGETLEYG---DRV 264
Query: 289 RELFRHPEIADPETIELVADVAPSSIRE 316
R LFR P + D E D ++ RE
Sbjct: 265 RALFREPNVTDEYEFETTLDPDIAAARE 292
>gi|407464594|ref|YP_006775476.1| flap endonuclease-1 [Candidatus Nitrosopumilus sp. AR2]
gi|407047782|gb|AFS82534.1| flap endonuclease-1 [Candidatus Nitrosopumilus sp. AR2]
Length = 340
Score = 87.4 bits (215), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 45/113 (39%), Positives = 71/113 (62%), Gaps = 8/113 (7%)
Query: 317 SRKICIDASMSLYQFLIAVRS-EGNQLMSVDGEPTSHLMGTFYRTIRLVEHGLKPIYVFD 375
+R I IDA ++YQFL ++R +G QL +G TSHL G YR + + G+KP+YVFD
Sbjct: 21 NRVIAIDAYNAIYQFLASIRGPDGLQLSDSEGRITSHLSGLLYRNVNFLSLGIKPVYVFD 80
Query: 376 GKPPTLKSGELNKRMEKREDA----QKALAKAQEQGKLKWSDPD---EDGLVK 421
G+PP+LK+ E+ +R + ++DA +KA+A + K++ +DG+VK
Sbjct: 81 GRPPSLKTAEIERRKQIKKDATVKYEKAVAAGNMEDARKFAQQTTSMKDGMVK 133
Score = 87.4 bits (215), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 53/159 (33%), Positives = 88/159 (55%), Gaps = 27/159 (16%)
Query: 60 KAPCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLE--- 116
+AP E EA A + G+ YA+A++D D++ G+ L+R+ T S RK+P + +++
Sbjct: 148 EAPSEGEATAAHLTNTGQAYASASQDYDSILCGAKRLVRNFTTSGRRKIPNRNTYIDILP 207
Query: 117 ------KVLEGMELSHEEFIDLCILLGCDYC-DSIRGIGPKRAIELIKEHRSIEKI---- 165
K L+ + L+ EE ID+ IL+G D+ + IGPK A++LIK++ +E I
Sbjct: 208 EIIETQKTLDEIGLTREELIDVGILIGTDFNPNGFERIGPKTAMKLIKQYSRLEDIPQIQ 267
Query: 166 --LENIDTKKYTVPEGWLYKEARELFRHPEVADPETIEF 202
L+ ID +K+ R +F +PEVA+ + I F
Sbjct: 268 EQLQEID-----------FKQIRNIFLNPEVAEVDEIVF 295
Score = 42.7 bits (99), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 43/79 (54%), Gaps = 18/79 (22%)
Query: 232 FIDLCILLGCDYC-DSIRGIGPKRAIELIKEHRSIEKI------LENIDTKKYTVPEGWL 284
ID+ IL+G D+ + IGPK A++LIK++ +E I L+ ID
Sbjct: 226 LIDVGILIGTDFNPNGFERIGPKTAMKLIKQYSRLEDIPQIQEQLQEID----------- 274
Query: 285 YKEARELFRHPEIADPETI 303
+K+ R +F +PE+A+ + I
Sbjct: 275 FKQIRNIFLNPEVAEVDEI 293
>gi|448318654|ref|ZP_21508168.1| flap endonuclease-1 [Natronococcus jeotgali DSM 18795]
gi|445598248|gb|ELY52311.1| flap endonuclease-1 [Natronococcus jeotgali DSM 18795]
Length = 325
Score = 87.4 bits (215), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 54/138 (39%), Positives = 72/138 (52%), Gaps = 12/138 (8%)
Query: 60 KAPCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVL 119
+AP E EAQ A +VK G +ED DAL FG+ + LR +T +L LE L
Sbjct: 149 EAPAEGEAQAAHLVKRGDADYVGSEDYDALLFGAPLTLRQLTSKGDPEL----MDLEATL 204
Query: 120 EGMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILE-NIDTKKYTVPE 178
E +L+ E+ ID IL+G D+ + + GIGPK AI I E + +LE DT +Y
Sbjct: 205 ERHDLTLEQLIDAAILIGTDFNEGVSGIGPKTAISEITERGDLWSVLEARGDTIEYG--- 261
Query: 179 GWLYKEARELFRHPEVAD 196
R+LFR P V D
Sbjct: 262 ----DRVRQLFRDPNVTD 275
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 47/90 (52%), Gaps = 2/90 (2%)
Query: 320 ICIDASMSLYQFLIAV--RSEGNQLMSVDGEPTSHLMGTFYRTIRLVEHGLKPIYVFDGK 377
I +DA LY++L + + + DG ++L+G R EH + P+ VFDG
Sbjct: 24 IAVDAHNWLYRYLTTTVKWTASEKYTTADGTEVANLIGIVQGLARFFEHDVTPVMVFDGG 83
Query: 378 PPTLKSGELNKRMEKREDAQKALAKAQEQG 407
P LKS E+ R E+R ++ L A+E+G
Sbjct: 84 PSQLKSEEIESRREQRRTYEEQLETAREEG 113
Score = 47.8 bits (112), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 36/72 (50%), Gaps = 8/72 (11%)
Query: 229 LYSFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILE-NIDTKKYTVPEGWLYKE 287
L ID IL+G D+ + + GIGPK AI I E + +LE DT +Y
Sbjct: 211 LEQLIDAAILIGTDFNEGVSGIGPKTAISEITERGDLWSVLEARGDTIEYG-------DR 263
Query: 288 ARELFRHPEIAD 299
R+LFR P + D
Sbjct: 264 VRQLFRDPNVTD 275
>gi|57641216|ref|YP_183694.1| flap endonuclease-1 [Thermococcus kodakarensis KOD1]
gi|73919352|sp|Q5JGN0.1|FEN_PYRKO RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|57159540|dbj|BAD85470.1| flap structure-specific endonuclease [Thermococcus kodakarensis
KOD1]
Length = 340
Score = 87.4 bits (215), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 52/148 (35%), Positives = 82/148 (55%), Gaps = 20/148 (13%)
Query: 60 KAPCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFH----- 114
+AP E EAQ A M VYA+A++D D+L FG+ L+R++T + RKLP + +
Sbjct: 148 QAPSEGEAQAAYMAAKKAVYASASQDYDSLLFGAPRLVRNLTITGRRKLPGKNVYVEVKP 207
Query: 115 ----LEKVLEGMELSHEEFIDLCILLGCDYC-DSIRGIGPKRAIELIKEHRS-IEKILEN 168
LE+VL+ + + E+ I+L IL+G DY I+GIGPK+A+ ++K + + K +
Sbjct: 208 ELVVLEEVLKELGIDREKLIELAILVGTDYNPGGIKGIGPKKALTIVKRTKDPLAKYQKE 267
Query: 169 IDTKKYTVPEGWLYKEARELFRHPEVAD 196
D Y + +E F +P V D
Sbjct: 268 SDVDLYAI---------KEFFLNPPVTD 286
Score = 79.7 bits (195), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 37/67 (55%), Positives = 45/67 (67%), Gaps = 1/67 (1%)
Query: 317 SRKICIDASMSLYQFLIAVRS-EGNQLMSVDGEPTSHLMGTFYRTIRLVEHGLKPIYVFD 375
+K+ IDA ++YQFL +R +G LM G TSHL G FYRTI L+E G+KP YVFD
Sbjct: 21 GKKVAIDAFNAMYQFLSTIRQRDGTPLMDSQGRITSHLSGFFYRTINLMEAGIKPAYVFD 80
Query: 376 GKPPTLK 382
GKPP K
Sbjct: 81 GKPPDFK 87
Score = 55.5 bits (132), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 22/49 (44%), Positives = 38/49 (77%)
Query: 3 LKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSSTTQGRLDSFF 51
LKW +PDE+G++K+LC + +F+E+R++NG ++L KA + Q L+S+F
Sbjct: 290 LKWREPDEEGILKFLCDEHDFSEERVKNGLERLKKAVKAGKQRTLESWF 338
Score = 55.1 bits (131), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 22/49 (44%), Positives = 37/49 (75%)
Query: 409 LKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSTTTQGRLDSFF 457
LKW +PDE+G++K+LC + +F+E+R++NG ++L KA Q L+S+F
Sbjct: 290 LKWREPDEEGILKFLCDEHDFSEERVKNGLERLKKAVKAGKQRTLESWF 338
>gi|448453282|ref|ZP_21593725.1| flap endonuclease-1 [Halorubrum litoreum JCM 13561]
gi|445807602|gb|EMA57685.1| flap endonuclease-1 [Halorubrum litoreum JCM 13561]
Length = 325
Score = 87.4 bits (215), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 50/137 (36%), Positives = 70/137 (51%), Gaps = 10/137 (7%)
Query: 60 KAPCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVL 119
+AP E EAQCA M G V +ED D L FG+ LR +T +L L L
Sbjct: 150 EAPAEGEAQCAHMAATGAVDHAGSEDYDTLLFGAPTTLRQLTSKGDPEL----MDLAATL 205
Query: 120 EGMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEG 179
++L +E +D+ +L G D+ + +RGIGPK A+ +KEH + +LE D + VP
Sbjct: 206 SDLDLDRQELVDVAMLCGTDFNEGVRGIGPKTAVTAVKEHGDLWGVLEARDAE---VPNA 262
Query: 180 WLYKEARELFRHPEVAD 196
+ RELF P D
Sbjct: 263 ---EAIRELFMDPPAED 276
Score = 52.8 bits (125), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 48/92 (52%), Gaps = 10/92 (10%)
Query: 232 FIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGWLYKEAREL 291
+D+ +L G D+ + +RGIGPK A+ +KEH + +LE D + VP + REL
Sbjct: 215 LVDVAMLCGTDFNEGVRGIGPKTAVTAVKEHGDLWGVLEARDAE---VPNA---EAIREL 268
Query: 292 FRHPEIADPETIELVADVAPSSIRESRKICID 323
F P D + + ADV P + +R +D
Sbjct: 269 FMDPPAED---VAVDADVNP-DVEAARAYVVD 296
Score = 44.7 bits (104), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 41/84 (48%), Gaps = 2/84 (2%)
Query: 311 PSSIRESRKICIDASMSLYQFLIAVR--SEGNQLMSVDGEPTSHLMGTFYRTIRLVEHGL 368
P + E + +DA LY++L + + + DG ++L+G + EH L
Sbjct: 16 PFAELEGSVVAVDAHNWLYRYLTTTVKWTSDEKYTTADGVEVANLIGVVQGLPKFFEHDL 75
Query: 369 KPIYVFDGKPPTLKSGELNKRMEK 392
P+ VFDG LK+ E+ +R EK
Sbjct: 76 IPVMVFDGAVTDLKADEVAERREK 99
>gi|20092799|ref|NP_618874.1| flap endonuclease-1 [Methanosarcina acetivorans C2A]
gi|28380016|sp|Q8TIY5.1|FEN_METAC RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|19918097|gb|AAM07354.1| FlaP endonuclease-1 [Methanosarcina acetivorans C2A]
Length = 338
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 42/94 (44%), Positives = 63/94 (67%), Gaps = 1/94 (1%)
Query: 317 SRKICIDASMSLYQFLIAVRS-EGNQLMSVDGEPTSHLMGTFYRTIRLVEHGLKPIYVFD 375
+R + +DA +L+QFL +R +G+ L++ G+ TSHL G YRT LVE G+KP+++FD
Sbjct: 21 NRVVAVDAFNTLHQFLSIIRQRDGSPLVNSRGKVTSHLSGLLYRTASLVEAGIKPVFIFD 80
Query: 376 GKPPTLKSGELNKRMEKREDAQKALAKAQEQGKL 409
GKPP LKS L++R E RE + + A+ +G L
Sbjct: 81 GKPPDLKSETLSRRKEVRETSLEKWENAKAEGDL 114
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 50/152 (32%), Positives = 81/152 (53%), Gaps = 15/152 (9%)
Query: 60 KAPCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEK-- 117
+APCE EAQ A MV A++D D+ FG+ ++R+M + RKLP + +++
Sbjct: 148 QAPCEGEAQAAHMVLKKDADYVASQDYDSFLFGAPKVVRNMAVTGKRKLPGKNVYVDVEL 207
Query: 118 -------VLEGMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENID 170
L +E++ ++ ID+ I +G DY + +GPK A++LIK+H I +L D
Sbjct: 208 EVIELEETLRALEINRDQLIDIAICVGTDYNKGLEKVGPKTALKLIKKHGDIHAVLREKD 267
Query: 171 TKKYTVPEGWLYKEARELFRHPEVADPETIEF 202
+ EG R+LF HPEV + I++
Sbjct: 268 ME----IEG--LDRIRKLFTHPEVTEDYEIKW 293
Score = 47.0 bits (110), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 42/77 (54%), Gaps = 7/77 (9%)
Query: 224 RAIELLYS-FIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEG 282
RA+E+ ID+ I +G DY + +GPK A++LIK+H I +L D + EG
Sbjct: 217 RALEINRDQLIDIAICVGTDYNKGLEKVGPKTALKLIKKHGDIHAVLREKDME----IEG 272
Query: 283 WLYKEARELFRHPEIAD 299
R+LF HPE+ +
Sbjct: 273 --LDRIRKLFTHPEVTE 287
Score = 45.8 bits (107), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 32/49 (65%), Gaps = 1/49 (2%)
Query: 3 LKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSSTTQGRLDSFF 51
+KW+ PD + L+K+LC + +F+ DR+ A++ LKA S Q LD +F
Sbjct: 291 IKWTKPDSEKLIKFLCEENDFSTDRVEKAAER-LKAASGARQKTLDQWF 338
Score = 45.1 bits (105), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 34/53 (64%), Gaps = 1/53 (1%)
Query: 405 EQGKLKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSTTTQGRLDSFF 457
E ++KW+ PD + L+K+LC + +F+ DR+ A++ LKA S Q LD +F
Sbjct: 287 EDYEIKWTKPDSEKLIKFLCEENDFSTDRVEKAAER-LKAASGARQKTLDQWF 338
>gi|448365125|ref|ZP_21553668.1| flap endonuclease-1 [Natrialba aegyptia DSM 13077]
gi|445656129|gb|ELZ08969.1| flap endonuclease-1 [Natrialba aegyptia DSM 13077]
Length = 325
Score = 86.7 bits (213), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 52/138 (37%), Positives = 71/138 (51%), Gaps = 12/138 (8%)
Query: 60 KAPCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVL 119
+AP E EAQ A M + G +ED DAL FG+ + LR +T K + L+ L
Sbjct: 149 EAPAEGEAQAAHMARRGDADYVGSEDYDALLFGAPLTLRQLT----SKGDPERMDLQATL 204
Query: 120 EGMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILE-NIDTKKYTVPE 178
+ L+ E+ ID IL+G D+ + + GIGPK AI I EH + +LE D+ +Y
Sbjct: 205 DHHGLTLEQLIDAAILIGTDFNEGVSGIGPKTAIAEITEHGDLWGVLEARGDSIRYG--- 261
Query: 179 GWLYKEARELFRHPEVAD 196
RELFR P V D
Sbjct: 262 ----DRVRELFREPNVTD 275
Score = 51.6 bits (122), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/72 (38%), Positives = 37/72 (51%), Gaps = 8/72 (11%)
Query: 229 LYSFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILE-NIDTKKYTVPEGWLYKE 287
L ID IL+G D+ + + GIGPK AI I EH + +LE D+ +Y
Sbjct: 211 LEQLIDAAILIGTDFNEGVSGIGPKTAIAEITEHGDLWGVLEARGDSIRYG-------DR 263
Query: 288 ARELFRHPEIAD 299
RELFR P + D
Sbjct: 264 VRELFREPNVTD 275
Score = 48.1 bits (113), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 46/90 (51%), Gaps = 2/90 (2%)
Query: 320 ICIDASMSLYQFLIAVRSEGN--QLMSVDGEPTSHLMGTFYRTIRLVEHGLKPIYVFDGK 377
+ +DA LY++L N + + DG ++L+G + E+ + P+ VFDG
Sbjct: 24 VAVDAHNWLYRYLTTTVKWTNSAKYTTGDGTEVANLVGIVQGLPKFFENDVTPVMVFDGG 83
Query: 378 PPTLKSGELNKRMEKREDAQKALAKAQEQG 407
P LK E+ R ++R ++ L A+E+G
Sbjct: 84 PSELKEDEIESRRDQRRTYEEQLETAREEG 113
>gi|257388818|ref|YP_003178591.1| flap endonuclease-1 [Halomicrobium mukohataei DSM 12286]
gi|257171125|gb|ACV48884.1| XPG I domain protein [Halomicrobium mukohataei DSM 12286]
Length = 326
Score = 86.7 bits (213), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 60/173 (34%), Positives = 80/173 (46%), Gaps = 17/173 (9%)
Query: 31 GAKKLLKARSSTTQGRLDSFFTIRREEKR-------KAPCEAEAQCAAMVKAGKVYATAT 83
G K + S TQ D+ T RE R AP E EAQ A M + V T
Sbjct: 114 GDSKAVARLDSQTQRLTDTILTTTREVLRLLDVPVVDAPAEGEAQAAHMARQNVVDYVGT 173
Query: 84 EDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVLEGMELSHEEFIDLCILLGCDYCDS 143
ED DAL G+ + LR +T S +L + L+ ++ E+ +D IL+G D+
Sbjct: 174 EDYDALLLGAPLTLRQLTSSGDPEL----MDFQATLDHHGITWEQLVDAAILMGTDFNPG 229
Query: 144 IRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGWLYKEARELFRHPEVAD 196
I G+GPK AI+L+KEH + L D + V G RELF P V D
Sbjct: 230 IDGVGPKTAIKLVKEHGDLWGAL---DARDAHVEHG---DRIRELFLDPAVTD 276
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 42/85 (49%), Gaps = 6/85 (7%)
Query: 232 FIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGWLYKEAREL 291
+D IL+G D+ I G+GPK AI+L+KEH + L D + V G REL
Sbjct: 215 LVDAAILMGTDFNPGIDGVGPKTAIKLVKEHGDLWGAL---DARDAHVEHG---DRIREL 268
Query: 292 FRHPEIADPETIELVADVAPSSIRE 316
F P + D ++L + + RE
Sbjct: 269 FLDPAVTDDYDLDLAVNPDLDAARE 293
Score = 44.3 bits (103), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 31/93 (33%), Positives = 50/93 (53%), Gaps = 2/93 (2%)
Query: 320 ICIDASMSLYQFLIA-VR-SEGNQLMSVDGEPTSHLMGTFYRTIRLVEHGLKPIYVFDGK 377
+ +DA LY++L VR + + + DG ++L+G + EH L P++VFDG
Sbjct: 25 VAVDAHNWLYRYLTTTVRFTSDEKYTTSDGTEVANLIGVVQGLPKFFEHDLTPVFVFDGG 84
Query: 378 PPTLKSGELNKRMEKREDAQKALAKAQEQGKLK 410
LK E+ +R E RE ++ L A+E+G K
Sbjct: 85 VTELKDDEVEQRREAREAREEKLEAARERGDSK 117
>gi|147920854|ref|YP_685339.1| flap endonuclease-1 [Methanocella arvoryzae MRE50]
gi|121690538|sp|Q0W6I0.1|FEN_UNCMA RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|110620735|emb|CAJ36013.1| flap structure-specific endonuclease [Methanocella arvoryzae MRE50]
Length = 340
Score = 86.7 bits (213), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 51/146 (34%), Positives = 81/146 (55%), Gaps = 16/146 (10%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFH------ 114
AP E EAQ A MV G ++D D+L FG+ ++R++ + RK+P + +
Sbjct: 148 APSEGEAQAAYMVSRGAADYVGSQDYDSLLFGAPRVVRNIAITGKRKVPRKNIYMDVKPE 207
Query: 115 ---LEKVLEGMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEH-RSIEKILENID 170
L++VL + L+ EE ID+ IL+G DY I +GPK A++L+K+H ++ IL+ +
Sbjct: 208 VIELQEVLATLGLTREELIDMAILVGTDYNPGIFKVGPKTALKLVKKHGDNMPAILDELG 267
Query: 171 TKKYTVPEGWLYKEARELFRHPEVAD 196
T+ E W + +E F HP V D
Sbjct: 268 Q---TI-ENW--EAIKEFFLHPTVTD 287
Score = 80.1 bits (196), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 38/83 (45%), Positives = 52/83 (62%), Gaps = 1/83 (1%)
Query: 317 SRKICIDASMSLYQFLIAVRS-EGNQLMSVDGEPTSHLMGTFYRTIRLVEHGLKPIYVFD 375
+R + +DA +LYQFL +R +G L G TSHL G YR LVE G+KP++VFD
Sbjct: 21 NRTVAVDAYNTLYQFLSIIRQQDGAPLADDRGNVTSHLSGIIYRVTNLVEEGMKPVFVFD 80
Query: 376 GKPPTLKSGELNKRMEKREDAQK 398
GKPP+ K+ + R E RE A++
Sbjct: 81 GKPPSFKAETIKARAEVREAARQ 103
Score = 45.8 bits (107), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 38/138 (27%), Positives = 62/138 (44%), Gaps = 34/138 (24%)
Query: 164 KILENID-TKKYTVPEGWLYKEARELFRHPEVADPETIEFIDLCILLGCDYCDSIRGIGP 222
+++ NI T K VP +Y + + PE IE ++ LG +
Sbjct: 182 RVVRNIAITGKRKVPRKNIYMDVK----------PEVIELQEVLATLGLTREE------- 224
Query: 223 KRAIELLYSFIDLCILLGCDYCDSIRGIGPKRAIELIKEH-RSIEKILENIDTKKYTVPE 281
ID+ IL+G DY I +GPK A++L+K+H ++ IL+ + T+ E
Sbjct: 225 ---------LIDMAILVGTDYNPGIFKVGPKTALKLVKKHGDNMPAILDELGQ---TI-E 271
Query: 282 GWLYKEARELFRHPEIAD 299
W + +E F HP + D
Sbjct: 272 NW--EAIKEFFLHPTVTD 287
>gi|336255103|ref|YP_004598210.1| Flap structure-specific endonuclease [Halopiger xanaduensis SH-6]
gi|335339092|gb|AEH38331.1| Flap structure-specific endonuclease [Halopiger xanaduensis SH-6]
Length = 325
Score = 86.7 bits (213), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 52/138 (37%), Positives = 73/138 (52%), Gaps = 12/138 (8%)
Query: 60 KAPCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVL 119
+AP E EAQ A +V+ G +ED DAL FG+ + LR +T +L LE L
Sbjct: 149 EAPAEGEAQAAHIVRRGDADYVGSEDYDALLFGAPLTLRQLTSKGDPEL----MDLEATL 204
Query: 120 EGMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILE-NIDTKKYTVPE 178
+L+ E+ ID IL+G D+ + + GIGPK AI+ I EH + +LE D+ +Y
Sbjct: 205 AHHDLTLEQLIDAAILIGTDFNEGVSGIGPKTAIKEITEHGDLWSVLEARGDSIEYG--- 261
Query: 179 GWLYKEARELFRHPEVAD 196
R+LFR P V D
Sbjct: 262 ----DRVRQLFRDPNVTD 275
Score = 50.1 bits (118), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 38/72 (52%), Gaps = 8/72 (11%)
Query: 229 LYSFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILE-NIDTKKYTVPEGWLYKE 287
L ID IL+G D+ + + GIGPK AI+ I EH + +LE D+ +Y
Sbjct: 211 LEQLIDAAILIGTDFNEGVSGIGPKTAIKEITEHGDLWSVLEARGDSIEYG-------DR 263
Query: 288 ARELFRHPEIAD 299
R+LFR P + D
Sbjct: 264 VRQLFRDPNVTD 275
Score = 49.3 bits (116), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 47/90 (52%), Gaps = 2/90 (2%)
Query: 320 ICIDASMSLYQFLIAVR--SEGNQLMSVDGEPTSHLMGTFYRTIRLVEHGLKPIYVFDGK 377
+ +DA LY++L ++ + + DG ++L+G + E+ + P+ VFDG
Sbjct: 24 VAVDAHNWLYRYLTTTVKWTDSSVYTTADGTEVANLVGIVQGLPKFFENDVTPVMVFDGG 83
Query: 378 PPTLKSGELNKRMEKREDAQKALAKAQEQG 407
P LK E+ R ++R ++ L A+E+G
Sbjct: 84 PSELKEDEIESRRDQRRTYEEQLETAREEG 113
>gi|289582877|ref|YP_003481343.1| flap structure-specific endonuclease [Natrialba magadii ATCC 43099]
gi|448283660|ref|ZP_21474932.1| flap endonuclease-1 [Natrialba magadii ATCC 43099]
gi|289532430|gb|ADD06781.1| flap structure-specific endonuclease [Natrialba magadii ATCC 43099]
gi|445573260|gb|ELY27783.1| flap endonuclease-1 [Natrialba magadii ATCC 43099]
Length = 325
Score = 86.7 bits (213), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 53/137 (38%), Positives = 71/137 (51%), Gaps = 10/137 (7%)
Query: 60 KAPCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVL 119
+AP E EAQ A MV+ G +ED DAL FG+ LR +T +L LE L
Sbjct: 149 EAPAEGEAQAAHMVRRGDADYVGSEDYDALLFGAPYTLRQLTSKGDPEL----MDLEATL 204
Query: 120 EGMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEG 179
+ +L+ E+ ID IL+G D+ + I GIGPK A+ I EH + +LE + T+ G
Sbjct: 205 DHHDLTLEQLIDAAILIGTDFNEGISGIGPKTALTEISEHGDLWSVLE---ARGETLEYG 261
Query: 180 WLYKEARELFRHPEVAD 196
R LFR P V D
Sbjct: 262 ---DRVRALFREPNVTD 275
Score = 52.8 bits (125), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 31/107 (28%), Positives = 55/107 (51%), Gaps = 4/107 (3%)
Query: 303 IELVADVAPSSIRESRKICIDASMSLYQFLIAV--RSEGNQLMSVDGEPTSHLMGTFYRT 360
I ++ DV S I + +DA LY++L + ++ + DG ++L+G
Sbjct: 9 IAVIEDVPFSEIE--GVVAVDAHNWLYRYLTTTVKWTSSSKYTTADGTEVANLIGIVQGL 66
Query: 361 IRLVEHGLKPIYVFDGKPPTLKSGELNKRMEKREDAQKALAKAQEQG 407
+ E+ + P+ VFDG P LK E+ R E+R+ ++ L A+E+G
Sbjct: 67 PKFFENDVTPVMVFDGGPSELKEDEIESRREQRQTYEEQLETAREEG 113
Score = 49.7 bits (117), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 31/88 (35%), Positives = 41/88 (46%), Gaps = 6/88 (6%)
Query: 229 LYSFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGWLYKEA 288
L ID IL+G D+ + I GIGPK A+ I EH + +LE + T+ G
Sbjct: 211 LEQLIDAAILIGTDFNEGISGIGPKTALTEISEHGDLWSVLE---ARGETLEYG---DRV 264
Query: 289 RELFRHPEIADPETIELVADVAPSSIRE 316
R LFR P + D E D + RE
Sbjct: 265 RALFREPNVTDEYEFETTLDPDIEAARE 292
>gi|325959793|ref|YP_004291259.1| Flap structure-specific endonuclease [Methanobacterium sp. AL-21]
gi|325331225|gb|ADZ10287.1| Flap structure-specific endonuclease [Methanobacterium sp. AL-21]
Length = 328
Score = 86.3 bits (212), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 54/139 (38%), Positives = 77/139 (55%), Gaps = 13/139 (9%)
Query: 309 VAPSSIR----ESRKICIDASMSLYQFLIAVRS-EGNQLMSVDGEPTSHLMGTFYRTIRL 363
V P +I+ ES+ + +DA+ +YQFL ++R +G LM + TSH G YRT L
Sbjct: 9 VTPENIKFQDLESKIVALDAANVIYQFLSSIRQVDGTPLMDENKNITSHFSGILYRTSSL 68
Query: 364 VEHGLKPIYVFDGKPPTLKSGELNKRMEKREDAQKALAKAQEQGKLKWSDPDEDGLVKYL 423
+E G+KPIY+FDG LK +KR E +E++QK KA E+G L+ + KY
Sbjct: 69 IEKGIKPIYIFDGVSDALKKDTQDKRREVKEESQKKWDKALEEGNLEEAR-------KYA 121
Query: 424 CGDKNFAEDRIRNGAKKLL 442
+ D I G+KKLL
Sbjct: 122 VRSSRMSRDIIE-GSKKLL 139
Score = 82.4 bits (202), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 38/111 (34%), Positives = 69/111 (62%), Gaps = 1/111 (0%)
Query: 60 KAPCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVL 119
+A E EAQ + MV+ G + ++D D + FG+ ++R++T + K ++ L+KVL
Sbjct: 148 QALGEGEAQASYMVENGDAWCVGSQDYDCILFGATRMVRNLTIT-GGKANLELITLKKVL 206
Query: 120 EGMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENID 170
E ME++ E+ +D+ IL+G D+ ++G+G K ++LIK+H I ++E D
Sbjct: 207 ENMEITREQLVDIAILVGTDFNRGVKGVGAKTGLKLIKKHGDIFNVIEKND 257
Score = 41.2 bits (95), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 39/82 (47%), Gaps = 14/82 (17%)
Query: 206 CILLGCD-YCDSIRGIGPKRAIELLY-------------SFIDLCILLGCDYCDSIRGIG 251
CIL G ++ G K +EL+ +D+ IL+G D+ ++G+G
Sbjct: 176 CILFGATRMVRNLTITGGKANLELITLKKVLENMEITREQLVDIAILVGTDFNRGVKGVG 235
Query: 252 PKRAIELIKEHRSIEKILENID 273
K ++LIK+H I ++E D
Sbjct: 236 AKTGLKLIKKHGDIFNVIEKND 257
>gi|311977771|ref|YP_003986891.1| putative endonuclease of the XPG family [Acanthamoeba polyphaga
mimivirus]
gi|82000308|sp|Q5UQW7.1|YL386_MIMIV RecName: Full=Putative endonuclease L386
gi|55417005|gb|AAV50655.1| putative endonuclease of the XPG family [Acanthamoeba polyphaga
mimivirus]
gi|308204373|gb|ADO18174.1| putative endonuclease of the XPG family [Acanthamoeba polyphaga
mimivirus]
gi|339061318|gb|AEJ34622.1| putative endonuclease of the XPG family [Acanthamoeba polyphaga
mimivirus]
Length = 473
Score = 86.3 bits (212), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 47/113 (41%), Positives = 66/113 (58%), Gaps = 6/113 (5%)
Query: 61 APCEAEAQCAAMV----KAGKVYATA--TEDMDALTFGSNILLRHMTFSEARKLPVQEFH 114
AP EA+ C+ + GK Y TED D L G+ + + M +
Sbjct: 154 APGEADVICSWLCARHDSNGKRYVKGVCTEDSDMLPLGAPYMFKDMLGLNNLNKNIIIVK 213
Query: 115 LEKVLEGMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILE 167
L+ VL + L+ EFIDLC+LLGCDYCD+I+GIGPK A +LI E+R+++K+LE
Sbjct: 214 LKDVLGFLGLTMNEFIDLCVLLGCDYCDNIKGIGPKNAYKLIVEYRTLDKVLE 266
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 27/39 (69%), Positives = 36/39 (92%)
Query: 232 FIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILE 270
FIDLC+LLGCDYCD+I+GIGPK A +LI E+R+++K+LE
Sbjct: 228 FIDLCVLLGCDYCDNIKGIGPKNAYKLIVEYRTLDKVLE 266
Score = 65.1 bits (157), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 48/75 (64%)
Query: 320 ICIDASMSLYQFLIAVRSEGNQLMSVDGEPTSHLMGTFYRTIRLVEHGLKPIYVFDGKPP 379
+ IDAS+++Y+ + G L++ +G+ TSHL G FY + +++ + PIYVFDGK P
Sbjct: 54 VAIDASLAIYRMVYGKLKSGPSLVNREGKLTSHLRGIFYNVLTFLQNDIIPIYVFDGKAP 113
Query: 380 TLKSGELNKRMEKRE 394
+KS + KR +++
Sbjct: 114 DIKSKTIEKRKLRKD 128
Score = 56.6 bits (135), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 22/32 (68%), Positives = 28/32 (87%)
Query: 201 EFIDLCILLGCDYCDSIRGIGPKRAIELLYSF 232
EFIDLC+LLGCDYCD+I+GIGPK A +L+ +
Sbjct: 227 EFIDLCVLLGCDYCDNIKGIGPKNAYKLIVEY 258
>gi|219850742|ref|YP_002465174.1| flap endonuclease-1 [Methanosphaerula palustris E1-9c]
gi|254788674|sp|B8GIA0.1|FEN_METPE RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|219545001|gb|ACL15451.1| XPG I domain protein [Methanosphaerula palustris E1-9c]
Length = 333
Score = 86.3 bits (212), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 42/117 (35%), Positives = 72/117 (61%), Gaps = 7/117 (5%)
Query: 60 KAPCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFS-----EARKLPVQ--E 112
+AP E EAQ A+M +G V ++D D+L FG+ +L+R++T S + R + VQ
Sbjct: 149 QAPSEGEAQAASMAASGAVTYAVSQDYDSLLFGAPLLVRNLTVSSKRRVQGRTIAVQPES 208
Query: 113 FHLEKVLEGMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENI 169
L++VL G+ ++ E+ I+ IL+G D+ IRG+GPK A++++K+ + I E +
Sbjct: 209 IRLDEVLGGLGITREQLIEAGILIGTDFNPGIRGVGPKTALKIVKKDGFADMIAEKL 265
Score = 84.7 bits (208), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 45/112 (40%), Positives = 65/112 (58%), Gaps = 15/112 (13%)
Query: 300 PETIELVADVAPSSIRESRKICIDASMSLYQFLIAVR-SEGNQLMSVDGEPTSHLMGTFY 358
P T E +A A ID + +LYQFL +R +G LM+ +G TSHL G F+
Sbjct: 15 PRTWETLAGTA----------AIDGNNALYQFLSIIRQPDGTPLMNSEGRITSHLSGVFF 64
Query: 359 RTIRLVEHGLKPIYVFDGKPPTLKSGELNKRMEKREDA----QKALAKAQEQ 406
RT+R +E G++P+Y+FDGKPP LK + R E R +A + ALA+ ++
Sbjct: 65 RTLRFLEKGIRPVYIFDGKPPALKQETIESRREVRREAGVQWEAALARGDQE 116
>gi|124485183|ref|YP_001029799.1| flap endonuclease-1 [Methanocorpusculum labreanum Z]
gi|166973701|sp|A2SQC6.1|FEN_METLZ RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|124362724|gb|ABN06532.1| flap endonuclease 1 [Methanocorpusculum labreanum Z]
Length = 333
Score = 86.3 bits (212), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 51/125 (40%), Positives = 69/125 (55%), Gaps = 9/125 (7%)
Query: 321 CIDASMSLYQFLIAVR-SEGNQLMSVDGEPTSHLMGTFYRTIRLVEHGLKPIYVFDGKPP 379
+DA +LYQFL +R ++G LM G TSHL G +R L+E + PIYVFDGKPP
Sbjct: 26 AVDAFNALYQFLSGIRQADGAPLMDGQGRITSHLSGLLFRNANLIEKNITPIYVFDGKPP 85
Query: 380 TLKSGELNKRMEKREDAQKALAKAQEQGKLKWSDPDEDGLVKYLCGDKNFAEDRIRNGAK 439
K+ L+KR E RE+A A KA ++G DE+ KY + I + +K
Sbjct: 86 VFKASTLSKRREVRENAADAWEKALKEG-------DEESARKYAMASSKI-DAFIIDSSK 137
Query: 440 KLLKA 444
+LL A
Sbjct: 138 ELLSA 142
Score = 82.0 bits (201), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 47/155 (30%), Positives = 83/155 (53%), Gaps = 9/155 (5%)
Query: 60 KAPCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKL--------PVQ 111
+AP E EAQ + M K G V ++D D+L FG+ L+R++T S +++ P +
Sbjct: 149 QAPEEGEAQSSFMTKNGDVTYAVSQDYDSLLFGAPDLVRNITVSGKKRIRGKVLSVYP-E 207
Query: 112 EFHLEKVLEGMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDT 171
LE+VL G+ ++ EE I + +L+G DY + G+GPK A+++++E + ++I E+ +
Sbjct: 208 RLRLEEVLTGLSVTQEELIQIALLIGTDYNSGVPGVGPKTAVKIVREGKFYDRIGESENA 267
Query: 172 KKYTVPEGWLYKEARELFRHPEVADPETIEFIDLC 206
+ G+ E + E P+ IDL
Sbjct: 268 AEPDQLIGYFMDPPVERSYNIESRSPDPDRVIDLL 302
>gi|351737540|gb|AEQ60575.1| putative endonuclease of the XPG family [Acanthamoeba castellanii
mamavirus]
gi|398257219|gb|EJN40827.1| putative endonuclease of the XPG family [Acanthamoeba polyphaga
lentillevirus]
Length = 473
Score = 86.3 bits (212), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 47/113 (41%), Positives = 66/113 (58%), Gaps = 6/113 (5%)
Query: 61 APCEAEAQCAAMV----KAGKVYATA--TEDMDALTFGSNILLRHMTFSEARKLPVQEFH 114
AP EA+ C+ + GK Y TED D L G+ + + M +
Sbjct: 154 APGEADVICSWLCARHDSNGKRYVKGVCTEDSDMLPLGAPYMFKDMLGLNNLNKNIIIVK 213
Query: 115 LEKVLEGMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILE 167
L+ VL + L+ EFIDLC+LLGCDYCD+I+GIGPK A +LI E+R+++K+LE
Sbjct: 214 LKDVLGFLGLTMNEFIDLCVLLGCDYCDNIKGIGPKNAYKLIVEYRTLDKVLE 266
Score = 67.0 bits (162), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 27/39 (69%), Positives = 36/39 (92%)
Query: 232 FIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILE 270
FIDLC+LLGCDYCD+I+GIGPK A +LI E+R+++K+LE
Sbjct: 228 FIDLCVLLGCDYCDNIKGIGPKNAYKLIVEYRTLDKVLE 266
Score = 65.1 bits (157), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 48/75 (64%)
Query: 320 ICIDASMSLYQFLIAVRSEGNQLMSVDGEPTSHLMGTFYRTIRLVEHGLKPIYVFDGKPP 379
+ IDAS+++Y+ + G L++ +G+ TSHL G FY + +++ + PIYVFDGK P
Sbjct: 54 VAIDASLAIYRMVYGKLKSGPSLVNREGKLTSHLRGIFYNVLTFLQNDIIPIYVFDGKAP 113
Query: 380 TLKSGELNKRMEKRE 394
+KS + KR +++
Sbjct: 114 DIKSKTIEKRKLRKD 128
Score = 56.2 bits (134), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 22/32 (68%), Positives = 28/32 (87%)
Query: 201 EFIDLCILLGCDYCDSIRGIGPKRAIELLYSF 232
EFIDLC+LLGCDYCD+I+GIGPK A +L+ +
Sbjct: 227 EFIDLCVLLGCDYCDNIKGIGPKNAYKLIVEY 258
>gi|170120476|ref|XP_001891239.1| predicted protein [Laccaria bicolor S238N-H82]
gi|164633426|gb|EDQ98110.1| predicted protein [Laccaria bicolor S238N-H82]
Length = 171
Score = 86.3 bits (212), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 41/99 (41%), Positives = 65/99 (65%), Gaps = 2/99 (2%)
Query: 63 CEAEAQCAAMVKAGKVYATATEDMDALTFG--SNILLRHMTFSEARKLPVQEFHLEKVLE 120
C + + + GK+YAT + DMDALTF + IL R++TFSEA+K P+ E +L++ E
Sbjct: 70 CFLVTRFTMLGRGGKMYATDSNDMDALTFNAPTGILFRYLTFSEAKKQPISEINLKEAFE 129
Query: 121 GMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEH 159
+ ++ + D CI LG DY + I+ +GPK A++LI+E+
Sbjct: 130 VLVMNMSQLFDQCIPLGRDYLEPIKDVGPKFALKLIREY 168
>gi|448352039|ref|ZP_21540831.1| flap endonuclease-1 [Natrialba taiwanensis DSM 12281]
gi|445631838|gb|ELY85062.1| flap endonuclease-1 [Natrialba taiwanensis DSM 12281]
Length = 316
Score = 85.9 bits (211), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 51/136 (37%), Positives = 71/136 (52%), Gaps = 12/136 (8%)
Query: 60 KAPCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVL 119
+AP E EAQ A M + G +ED DAL FG+ + LR +T K + L+ L
Sbjct: 149 EAPAEGEAQAAHMARRGDADYVGSEDYDALLFGAPLTLRQLT----SKGDPERMDLQATL 204
Query: 120 EGMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILE-NIDTKKYTVPE 178
+ +L+ E+ ID IL+G D+ + + GIGPK AI I EH + +LE D+ +Y
Sbjct: 205 DHHDLTLEQLIDAAILIGTDFNEGVSGIGPKTAIAEITEHGDLWSVLEARGDSIRYG--- 261
Query: 179 GWLYKEARELFRHPEV 194
RELFR P V
Sbjct: 262 ----DRVRELFREPNV 273
Score = 49.7 bits (117), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 27/70 (38%), Positives = 36/70 (51%), Gaps = 8/70 (11%)
Query: 229 LYSFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILE-NIDTKKYTVPEGWLYKE 287
L ID IL+G D+ + + GIGPK AI I EH + +LE D+ +Y
Sbjct: 211 LEQLIDAAILIGTDFNEGVSGIGPKTAIAEITEHGDLWSVLEARGDSIRYG-------DR 263
Query: 288 ARELFRHPEI 297
RELFR P +
Sbjct: 264 VRELFREPNV 273
Score = 48.9 bits (115), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 46/90 (51%), Gaps = 2/90 (2%)
Query: 320 ICIDASMSLYQFLIAVRSEGN--QLMSVDGEPTSHLMGTFYRTIRLVEHGLKPIYVFDGK 377
+ +DA LY++L N + + DG ++L+G + E+ + P+ VFDG
Sbjct: 24 VAVDAHNWLYRYLTTTVKWTNSAKYTTADGTEVANLVGIVQGLPKFFENDVTPVMVFDGG 83
Query: 378 PPTLKSGELNKRMEKREDAQKALAKAQEQG 407
P LK E+ R ++R ++ L A+E+G
Sbjct: 84 PSELKEDEIESRRDQRRTYEEQLETAREEG 113
>gi|330509049|ref|YP_004385477.1| FLAP endonuclease [Methanosaeta concilii GP6]
gi|328929857|gb|AEB69659.1| FLAP endonuclease [Methanosaeta concilii GP6]
Length = 339
Score = 85.5 bits (210), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 46/146 (31%), Positives = 79/146 (54%), Gaps = 15/146 (10%)
Query: 60 KAPCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFH----- 114
+AP E EAQ A M G V ++D D+L FG+ +++R++ + RKLP + +
Sbjct: 149 QAPSEGEAQAAYMAARGDVDYAGSQDYDSLLFGAPLVVRNLAITGKRKLPRKNIYVDVEP 208
Query: 115 ----LEKVLEGMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENID 170
LE L + ++H++ +++ I+ G D+ + +GPK A++LI+E +E IL + D
Sbjct: 209 EVINLEVGLANLGITHKQLVEIGIMCGTDFNSGLERVGPKTALKLIREKGDLESILADRD 268
Query: 171 TKKYTVPEGWLYKEARELFRHPEVAD 196
K +++ RE F HP V D
Sbjct: 269 DKIED------FEKIREFFLHPPVTD 288
Score = 71.2 bits (173), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 37/79 (46%), Positives = 48/79 (60%), Gaps = 1/79 (1%)
Query: 317 SRKICIDASMSLYQFLIAVRS-EGNQLMSVDGEPTSHLMGTFYRTIRLVEHGLKPIYVFD 375
R + IDA +LYQFL +R +G LM G TSHL G YRT L+E G+K +VFD
Sbjct: 24 GRWVAIDAFNTLYQFLSIIRQRDGTPLMDRQGRVTSHLSGLLYRTTNLIEAGVKVAFVFD 83
Query: 376 GKPPTLKSGELNKRMEKRE 394
G+ PT K+ L +R E R+
Sbjct: 84 GEAPTFKAVTLAERSEIRD 102
Score = 43.9 bits (102), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 39/74 (52%), Gaps = 6/74 (8%)
Query: 232 FIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGWLYKEAREL 291
+++ I+ G D+ + +GPK A++LI+E +E IL + D K +++ RE
Sbjct: 227 LVEIGIMCGTDFNSGLERVGPKTALKLIREKGDLESILADRDDKIED------FEKIREF 280
Query: 292 FRHPEIADPETIEL 305
F HP + D I L
Sbjct: 281 FLHPPVTDDYKIAL 294
>gi|386001444|ref|YP_005919743.1| FLAP endonuclease [Methanosaeta harundinacea 6Ac]
gi|357209500|gb|AET64120.1| FLAP endonuclease [Methanosaeta harundinacea 6Ac]
Length = 336
Score = 85.5 bits (210), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 51/151 (33%), Positives = 83/151 (54%), Gaps = 15/151 (9%)
Query: 60 KAPCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVL 119
+AP E EAQ A M G V ++D DAL FG+ ++R+M + RKLP + ++E +
Sbjct: 146 QAPSEGEAQAAFMAIKGDVDLVGSQDYDALLFGAPRVVRNMAITGKRKLPGKNVYVEVMP 205
Query: 120 EGMELSHE---------EFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENID 170
E + L E + +++ I+ G DY + ++ +GPK A++LIKEH ++E +LE
Sbjct: 206 EVISLDEELLRLGIARRQLVEIGIMCGTDYNEGLKRVGPKTALKLIKEHGNLEGVLE--- 262
Query: 171 TKKYTVPEGWLYKEARELFRHPEVADPETIE 201
+ T+ + E R+LF P V + IE
Sbjct: 263 ARGETIEDA---AEIRDLFLDPPVTEDYKIE 290
Score = 75.1 bits (183), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 38/89 (42%), Positives = 53/89 (59%), Gaps = 1/89 (1%)
Query: 320 ICIDASMSLYQFLIAVRS-EGNQLMSVDGEPTSHLMGTFYRTIRLVEHGLKPIYVFDGKP 378
I +DA +LYQFL +R +G L G TSHL G YR L+E G K ++VFDG+P
Sbjct: 24 IAVDAFNTLYQFLSIIRQQDGTPLRDGSGRTTSHLSGILYRMTNLLEAGAKVVFVFDGEP 83
Query: 379 PTLKSGELNKRMEKREDAQKALAKAQEQG 407
P K L++R E R A++ +A+E+G
Sbjct: 84 PRFKRETLDQRAETRSRAEEMWQRAKEEG 112
Score = 46.2 bits (108), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 43/73 (58%), Gaps = 6/73 (8%)
Query: 232 FIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGWLYKEAREL 291
+++ I+ G DY + ++ +GPK A++LIKEH ++E +LE + T+ + E R+L
Sbjct: 224 LVEIGIMCGTDYNEGLKRVGPKTALKLIKEHGNLEGVLE---ARGETIEDA---AEIRDL 277
Query: 292 FRHPEIADPETIE 304
F P + + IE
Sbjct: 278 FLDPPVTEDYKIE 290
>gi|410722033|ref|ZP_11361349.1| flap endonuclease 1 [Methanobacterium sp. Maddingley MBC34]
gi|410597930|gb|EKQ52534.1| flap endonuclease 1 [Methanobacterium sp. Maddingley MBC34]
Length = 328
Score = 85.5 bits (210), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 44/135 (32%), Positives = 80/135 (59%), Gaps = 6/135 (4%)
Query: 60 KAPCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVL 119
+A E EAQ + MV G + A++D D + FG+ +++++T S + P + LEK+L
Sbjct: 148 QAKGEGEAQASYMVARGDAWCVASQDYDCMLFGAPRMVKNLTISGTQNTP-ELIELEKIL 206
Query: 120 EGMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEG 179
++++ E+ +DL I++G D+ I+GIG K+ ++LI++H I +ILE +D + P
Sbjct: 207 GTLDITREQLVDLAIMVGTDFNQGIKGIGAKKGLKLIEKHGDIFQILEKLDIQLDVDPH- 265
Query: 180 WLYKEARELFRHPEV 194
R++F + EV
Sbjct: 266 ----ILRDMFLNHEV 276
Score = 81.6 bits (200), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 51/140 (36%), Positives = 77/140 (55%), Gaps = 13/140 (9%)
Query: 309 VAPSSIR----ESRKICIDASMSLYQFLIAVRS-EGNQLMSVDGEPTSHLMGTFYRTIRL 363
V+P IR + + + +DA+ +YQFL ++R +G L +G TSH G YRT L
Sbjct: 9 VSPEEIRFEDLDGKVVALDAANVIYQFLSSIRQIDGTPLKDQNGRITSHFSGILYRTSSL 68
Query: 364 VEHGLKPIYVFDGKPPTLKSGELNKRMEKREDAQKALAKAQEQGKLKWSDPDEDGLVKYL 423
VE G+KPIYVFDG+ LK KR E +E++++ +A E+G+L D K+
Sbjct: 69 VEKGIKPIYVFDGQSSALKKETQQKRREIKEESERKWKEALEEGRL-------DDARKFA 121
Query: 424 CGDKNFAEDRIRNGAKKLLK 443
+ + I G+KKL+K
Sbjct: 122 VRSSRMSPE-IVEGSKKLIK 140
Score = 46.2 bits (108), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 39/66 (59%), Gaps = 5/66 (7%)
Query: 232 FIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGWLYKEAREL 291
+DL I++G D+ I+GIG K+ ++LI++H I +ILE +D + P R++
Sbjct: 216 LVDLAIMVGTDFNQGIKGIGAKKGLKLIEKHGDIFQILEKLDIQLDVDPH-----ILRDM 270
Query: 292 FRHPEI 297
F + E+
Sbjct: 271 FLNHEV 276
Score = 45.4 bits (106), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 21/49 (42%), Positives = 32/49 (65%), Gaps = 2/49 (4%)
Query: 3 LKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSSTTQGRLDSFF 51
LKW DE G+V +LCG+ +F+E+R+ + KL K + TTQ L+ +F
Sbjct: 282 LKWQKADEQGIVDFLCGEHDFSENRVLSAVDKLKKLQ--TTQSSLEQWF 328
Score = 45.4 bits (106), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 21/49 (42%), Positives = 32/49 (65%), Gaps = 2/49 (4%)
Query: 409 LKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSTTTQGRLDSFF 457
LKW DE G+V +LCG+ +F+E+R+ + KL K + TTQ L+ +F
Sbjct: 282 LKWQKADEQGIVDFLCGEHDFSENRVLSAVDKLKKLQ--TTQSSLEQWF 328
>gi|448439982|ref|ZP_21588230.1| flap endonuclease-1 [Halorubrum saccharovorum DSM 1137]
gi|445690499|gb|ELZ42709.1| flap endonuclease-1 [Halorubrum saccharovorum DSM 1137]
Length = 325
Score = 85.1 bits (209), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 48/139 (34%), Positives = 71/139 (51%), Gaps = 10/139 (7%)
Query: 60 KAPCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVL 119
+AP E EAQCA M G V +ED D L FG+ LR +T +R P + L L
Sbjct: 150 EAPAEGEAQCAHMAATGTVDHAGSEDYDTLLFGAPTTLRQLT---SRGDP-ELMDLAATL 205
Query: 120 EGMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEG 179
+G+ + +D +L G D+ + +RGIGPK A++ ++EH + +L D + +P
Sbjct: 206 DGLGFDRQGLVDAAMLCGTDFNEGVRGIGPKTAVKAVREHGDLWGVL---DARGAEIPNA 262
Query: 180 WLYKEARELFRHPEVADPE 198
+ RELF P D E
Sbjct: 263 ---EAIRELFMDPPATDVE 278
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/100 (30%), Positives = 49/100 (49%), Gaps = 14/100 (14%)
Query: 212 DYCDSIRGIGPKRAIELLYSFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILEN 271
D ++ G+G R +D +L G D+ + +RGIGPK A++ ++EH + +L
Sbjct: 200 DLAATLDGLGFDR-----QGLVDAAMLCGTDFNEGVRGIGPKTAVKAVREHGDLWGVL-- 252
Query: 272 IDTKKYTVPEGWLYKEARELFRHPEIADPETIELVADVAP 311
D + +P + RELF P D +E+ A V P
Sbjct: 253 -DARGAEIPNA---EAIRELFMDPPATD---VEVDATVNP 285
Score = 44.3 bits (103), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 44/91 (48%), Gaps = 3/91 (3%)
Query: 298 ADPETIELVADVAPSSIRESRKICIDASMSLYQFLIAVR--SEGNQLMSVDGEPTSHLMG 355
AD + + DVA + I E + +DA LY++L + + DG ++L+G
Sbjct: 4 ADLRDLAAIRDVAFAEI-EGSVVAVDAHNWLYRYLTTTVKWTSDEAYTTADGVEVANLIG 62
Query: 356 TFYRTIRLVEHGLKPIYVFDGKPPTLKSGEL 386
+ EHGL P+ VFDG LK+ E+
Sbjct: 63 VAQGLPKFFEHGLTPVMVFDGAVTELKADEV 93
>gi|261402763|ref|YP_003246987.1| flap endonuclease-1 [Methanocaldococcus vulcanius M7]
gi|261369756|gb|ACX72505.1| flap structure-specific endonuclease [Methanocaldococcus vulcanius
M7]
Length = 326
Score = 84.7 bits (208), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 45/143 (31%), Positives = 86/143 (60%), Gaps = 14/143 (9%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVLE 120
AP E EAQ + M K G V+A ++D D+L +G+ ++R++T + +++P + +L+ VLE
Sbjct: 149 APSEGEAQASYMAKKGDVWAVVSQDYDSLLYGAPRVVRNLTTT--KEMP-ELINLDDVLE 205
Query: 121 GMELSHEEFIDLCILLGCDYC-DSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEG 179
+ +S ++ ID+ IL+G DY ++GIG KRA EL+K + + + + ++
Sbjct: 206 ELRISLDDLIDIAILMGTDYNPGGVKGIGFKRAYELVKSGVAKDVLKKEVEN-------- 257
Query: 180 WLYKEARELFRHPEVADPETIEF 202
Y+E R++F+ P++ D ++
Sbjct: 258 --YEEIRKIFKEPKITDEYSVNL 278
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 37/95 (38%), Positives = 59/95 (62%), Gaps = 1/95 (1%)
Query: 316 ESRKICIDASMSLYQFLIAVR-SEGNQLMSVDGEPTSHLMGTFYRTIRLVEHGLKPIYVF 374
+ +K+ ID +LYQFL ++R +G+ L + GE TS G FY+TI L+E+ + PI+VF
Sbjct: 20 KGKKVAIDGMNALYQFLTSIRLKDGSPLKNKKGEITSAYNGIFYKTIHLLENDITPIWVF 79
Query: 375 DGKPPTLKSGELNKRMEKREDAQKALAKAQEQGKL 409
DG+PP LK R +E A++ + +A ++ L
Sbjct: 80 DGEPPKLKEKTRKMRRHMKEQAEEKMKEAMKKENL 114
Score = 44.7 bits (104), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 43/78 (55%), Gaps = 11/78 (14%)
Query: 229 LYSFIDLCILLGCDYC-DSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGWLYKE 287
L ID+ IL+G DY ++GIG KRA EL+K + + + + ++ Y+E
Sbjct: 211 LDDLIDIAILMGTDYNPGGVKGIGFKRAYELVKSGVAKDVLKKEVEN----------YEE 260
Query: 288 ARELFRHPEIADPETIEL 305
R++F+ P+I D ++ L
Sbjct: 261 IRKIFKEPKITDEYSVNL 278
>gi|91773853|ref|YP_566545.1| flap endonuclease-1 [Methanococcoides burtonii DSM 6242]
gi|121684238|sp|Q12UT1.1|FEN_METBU RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|91712868|gb|ABE52795.1| FEN1 flap endonuclease with 5'-3' exonuclease activity
[Methanococcoides burtonii DSM 6242]
Length = 338
Score = 84.7 bits (208), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 44/92 (47%), Positives = 55/92 (59%), Gaps = 1/92 (1%)
Query: 317 SRKICIDASMSLYQFLIAVRS-EGNQLMSVDGEPTSHLMGTFYRTIRLVEHGLKPIYVFD 375
++ + IDA +LYQFL +R +G L G+ TSHL G YR L+E G+KPI+VFD
Sbjct: 21 NKVVAIDAYNTLYQFLSIIRQRDGTPLKDSRGQITSHLSGILYRLTSLIEAGVKPIFVFD 80
Query: 376 GKPPTLKSGELNKRMEKREDAQKALAKAQEQG 407
GKPP KS L KR E RE A A+ QG
Sbjct: 81 GKPPDFKSDTLAKRHEVRESATAKWEDAKAQG 112
Score = 83.2 bits (204), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 48/160 (30%), Positives = 83/160 (51%), Gaps = 29/160 (18%)
Query: 60 KAPCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVL 119
KAP E EAQ + MV+ G ++D D+ FG+ ++R++T + RKLP + +++
Sbjct: 148 KAPSEGEAQASYMVQKGDADYIGSQDYDSFLFGAPQVVRNLTITGKRKLPKKNIYVDVKP 207
Query: 120 EGMEL---------SHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKIL---- 166
E + L + ++ ID+ + +G DY + IGPKRA++L+KEH I+ +L
Sbjct: 208 EVLSLVDSLGELGITRQQLIDIAMCVGTDYNTGLENIGPKRALKLVKEHGDIKVVLKELG 267
Query: 167 ---ENIDTKKYTVPEGWLYKEARELFRHPEVADPETIEFI 203
E++D K R+ F +P V D +++I
Sbjct: 268 KDIEDLDAK-------------RDFFMNPPVTDDYELKWI 294
Score = 45.4 bits (106), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 38/75 (50%), Gaps = 20/75 (26%)
Query: 232 FIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKIL-------ENIDTKKYTVPEGWL 284
ID+ + +G DY + IGPKRA++L+KEH I+ +L E++D K
Sbjct: 226 LIDIAMCVGTDYNTGLENIGPKRALKLVKEHGDIKVVLKELGKDIEDLDAK--------- 276
Query: 285 YKEARELFRHPEIAD 299
R+ F +P + D
Sbjct: 277 ----RDFFMNPPVTD 287
>gi|448504703|ref|ZP_21614044.1| flap endonuclease-1 [Halorubrum distributum JCM 9100]
gi|448519062|ref|ZP_21617838.1| flap endonuclease-1 [Halorubrum distributum JCM 10118]
gi|445701913|gb|ELZ53885.1| flap endonuclease-1 [Halorubrum distributum JCM 9100]
gi|445704078|gb|ELZ55996.1| flap endonuclease-1 [Halorubrum distributum JCM 10118]
Length = 325
Score = 84.7 bits (208), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 49/137 (35%), Positives = 69/137 (50%), Gaps = 10/137 (7%)
Query: 60 KAPCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVL 119
+AP E EAQCA M G V +ED D L FG+ LR +T +L L L
Sbjct: 150 EAPAEGEAQCAHMAATGAVDHAGSEDYDTLLFGAPTTLRQLTSKGDPEL----MDLAATL 205
Query: 120 EGMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEG 179
++L + +D+ +L G D+ + +RGIGPK A+ +KEH + +LE D + VP
Sbjct: 206 SDLDLDRQGLVDVAMLCGTDFNEGVRGIGPKTAVTAVKEHGDLWGVLEARDAE---VPSA 262
Query: 180 WLYKEARELFRHPEVAD 196
+ RELF P D
Sbjct: 263 ---EAIRELFMDPPAED 276
Score = 52.8 bits (125), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 31/93 (33%), Positives = 48/93 (51%), Gaps = 10/93 (10%)
Query: 231 SFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGWLYKEARE 290
+D+ +L G D+ + +RGIGPK A+ +KEH + +LE D + VP + RE
Sbjct: 214 GLVDVAMLCGTDFNEGVRGIGPKTAVTAVKEHGDLWGVLEARDAE---VPSA---EAIRE 267
Query: 291 LFRHPEIADPETIELVADVAPSSIRESRKICID 323
LF P D + + ADV P + +R +D
Sbjct: 268 LFMDPPAED---VAVDADVNP-DVEAARAYVVD 296
Score = 43.9 bits (102), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 40/84 (47%), Gaps = 2/84 (2%)
Query: 311 PSSIRESRKICIDASMSLYQFLIAVR--SEGNQLMSVDGEPTSHLMGTFYRTIRLVEHGL 368
P + E + +DA LY++L + + DG ++L+G + EH L
Sbjct: 16 PFAELEGSVVAVDAHNWLYRYLTTTVKWTSDETYTTADGVEVANLIGVVQGLPKFFEHDL 75
Query: 369 KPIYVFDGKPPTLKSGELNKRMEK 392
P+ VFDG LK+ E+ +R EK
Sbjct: 76 IPVMVFDGAVTDLKADEVAERREK 99
>gi|395646325|ref|ZP_10434185.1| Flap structure-specific endonuclease [Methanofollis liminatans DSM
4140]
gi|395443065|gb|EJG07822.1| Flap structure-specific endonuclease [Methanofollis liminatans DSM
4140]
Length = 333
Score = 84.3 bits (207), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 45/115 (39%), Positives = 68/115 (59%), Gaps = 9/115 (7%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKL--------PVQE 112
AP E EAQ A M + G V A A++D DAL FG+ L+R++T S RK+ P +
Sbjct: 150 APSEGEAQAAFMARQGDVGAAASQDYDALLFGAPRLVRNLTVSGKRKVRGRSVTVRP-ER 208
Query: 113 FHLEKVLEGMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILE 167
L VL G+ LS EE +++ IL+G D+ IRG+G K A+++++ + E + E
Sbjct: 209 IDLAAVLAGLGLSREELVEIGILIGTDFNPGIRGVGAKTALKIVRGGKFQETVQE 263
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 39/92 (42%), Positives = 57/92 (61%), Gaps = 1/92 (1%)
Query: 320 ICIDASMSLYQFLIAVR-SEGNQLMSVDGEPTSHLMGTFYRTIRLVEHGLKPIYVFDGKP 378
I +DA +LYQFL +R +G LM DG TSHL G F+R + +E G++P Y+FDG P
Sbjct: 25 IAVDAFNALYQFLTIIRQPDGTPLMDKDGRVTSHLSGIFFRNLNFLEKGIRPAYIFDGAP 84
Query: 379 PTLKSGELNKRMEKREDAQKALAKAQEQGKLK 410
P LK+ + +R RE A + +A E+G ++
Sbjct: 85 PDLKTETVARRRGVREAAGERWKEAVERGDIE 116
Score = 41.2 bits (95), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 16/34 (47%), Positives = 24/34 (70%)
Query: 408 KLKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKL 441
+L+W +PD DG+V LCG+ F+E RI G +K+
Sbjct: 287 RLEWREPDRDGIVAMLCGEYTFSEGRIDAGLQKI 320
Score = 40.4 bits (93), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 23/33 (69%)
Query: 3 LKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKL 35
L+W +PD DG+V LCG+ F+E RI G +K+
Sbjct: 288 LEWREPDRDGIVAMLCGEYTFSEGRIDAGLQKI 320
>gi|448362827|ref|ZP_21551431.1| flap endonuclease-1 [Natrialba asiatica DSM 12278]
gi|445647449|gb|ELZ00423.1| flap endonuclease-1 [Natrialba asiatica DSM 12278]
Length = 291
Score = 84.3 bits (207), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 51/136 (37%), Positives = 70/136 (51%), Gaps = 12/136 (8%)
Query: 60 KAPCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVL 119
+AP E EAQ A M + G +ED DAL FG+ + LR +T K + L+ L
Sbjct: 149 EAPAEGEAQAAHMARRGDADYVGSEDYDALLFGAPLTLRQLT----SKGDPERMDLQATL 204
Query: 120 EGMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILE-NIDTKKYTVPE 178
+ L+ E+ ID IL+G D+ + + GIGPK AI I EH + +LE D+ +Y
Sbjct: 205 DHHGLTLEQLIDAAILIGTDFNEGVSGIGPKTAIAEITEHGDLWSVLEARGDSIRYG--- 261
Query: 179 GWLYKEARELFRHPEV 194
RELFR P V
Sbjct: 262 ----DRVRELFREPNV 273
Score = 49.7 bits (117), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 27/70 (38%), Positives = 36/70 (51%), Gaps = 8/70 (11%)
Query: 229 LYSFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILE-NIDTKKYTVPEGWLYKE 287
L ID IL+G D+ + + GIGPK AI I EH + +LE D+ +Y
Sbjct: 211 LEQLIDAAILIGTDFNEGVSGIGPKTAIAEITEHGDLWSVLEARGDSIRYG-------DR 263
Query: 288 ARELFRHPEI 297
RELFR P +
Sbjct: 264 VRELFREPNV 273
Score = 47.8 bits (112), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 46/90 (51%), Gaps = 2/90 (2%)
Query: 320 ICIDASMSLYQFLIAVRSEGN--QLMSVDGEPTSHLMGTFYRTIRLVEHGLKPIYVFDGK 377
+ +DA LY++L N + + DG ++L+G + E+ + P+ VFDG
Sbjct: 24 VAVDAHNWLYRYLTTTVKWTNSAKYTTADGTEVANLVGIVQGLPKFFENDVVPVMVFDGG 83
Query: 378 PPTLKSGELNKRMEKREDAQKALAKAQEQG 407
P LK E+ R ++R ++ L A+E+G
Sbjct: 84 PSELKEDEIESRRDQRRTYEEQLETAREEG 113
>gi|448425472|ref|ZP_21582802.1| flap endonuclease-1 [Halorubrum terrestre JCM 10247]
gi|448485392|ref|ZP_21606617.1| flap endonuclease-1 [Halorubrum arcis JCM 13916]
gi|445680543|gb|ELZ32986.1| flap endonuclease-1 [Halorubrum terrestre JCM 10247]
gi|445818046|gb|EMA67913.1| flap endonuclease-1 [Halorubrum arcis JCM 13916]
Length = 325
Score = 84.3 bits (207), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 49/137 (35%), Positives = 69/137 (50%), Gaps = 10/137 (7%)
Query: 60 KAPCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVL 119
+AP E EAQCA M G V +ED D L FG+ LR +T +L L L
Sbjct: 150 EAPAEGEAQCAHMAATGAVDHAGSEDYDTLLFGAPTTLRQLTSKGDPEL----MDLAATL 205
Query: 120 EGMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEG 179
++L + +D+ +L G D+ + +RGIGPK A+ +KEH + +LE D + VP
Sbjct: 206 SDLDLDRQGLVDVAMLCGTDFNEGVRGIGPKTAVTAVKEHGDLWGVLEARDAE---VPSA 262
Query: 180 WLYKEARELFRHPEVAD 196
+ RELF P D
Sbjct: 263 ---EAIRELFMDPPAED 276
Score = 53.1 bits (126), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 31/93 (33%), Positives = 48/93 (51%), Gaps = 10/93 (10%)
Query: 231 SFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGWLYKEARE 290
+D+ +L G D+ + +RGIGPK A+ +KEH + +LE D + VP + RE
Sbjct: 214 GLVDVAMLCGTDFNEGVRGIGPKTAVTAVKEHGDLWGVLEARDAE---VPSA---EAIRE 267
Query: 291 LFRHPEIADPETIELVADVAPSSIRESRKICID 323
LF P D + + ADV P + +R +D
Sbjct: 268 LFMDPPAED---VAVDADVNP-DVEAARAYVVD 296
Score = 43.9 bits (102), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 40/84 (47%), Gaps = 2/84 (2%)
Query: 311 PSSIRESRKICIDASMSLYQFLIAVR--SEGNQLMSVDGEPTSHLMGTFYRTIRLVEHGL 368
P + E + +DA LY++L + + DG ++L+G + EH L
Sbjct: 16 PFAELEGSVVAVDAHNWLYRYLTTTVKWTSDETYTTADGVEVANLIGVVQGLPKFFEHDL 75
Query: 369 KPIYVFDGKPPTLKSGELNKRMEK 392
P+ VFDG LK+ E+ +R EK
Sbjct: 76 IPVMVFDGAVTDLKADEVAERREK 99
>gi|333910543|ref|YP_004484276.1| Flap structure-specific endonuclease [Methanotorris igneus Kol 5]
gi|333751132|gb|AEF96211.1| Flap structure-specific endonuclease [Methanotorris igneus Kol 5]
Length = 326
Score = 84.3 bits (207), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 48/143 (33%), Positives = 85/143 (59%), Gaps = 15/143 (10%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVLE 120
AP E E Q + M K G V+ ++D DAL +G+ ++R++T A K ++ LE VL
Sbjct: 149 APAEGEGQASYMAKKGDVFCVISQDYDALLYGAPRIVRNLT---ATKEELELIELENVLN 205
Query: 121 GMELSHEEFIDLCILLGCDYC-DSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEG 179
+ +SH++ ID+ IL+G DY ++GIGPK+A+E++K ++ E L+ ++
Sbjct: 206 ELGISHDDLIDMAILIGTDYNPKGVKGIGPKKALEIVK-SKNKELYLKAVEN-------- 256
Query: 180 WLYKEARELFRHPEVADPETIEF 202
Y+E + +F++P+V D +I+
Sbjct: 257 --YEEIKNIFKNPKVTDEYSIKL 277
Score = 75.5 bits (184), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 48/133 (36%), Positives = 70/133 (52%), Gaps = 9/133 (6%)
Query: 311 PSSIRESRKICIDASMSLYQFLIAVR-SEGNQLMSVDGEPTSHLMGTFYRTIRLVEHGLK 369
P + + ID LYQFL ++R +G+ L + GE TS G FY+TI ++E+ +
Sbjct: 15 PIKYLSGKTVAIDGMNVLYQFLSSIRLRDGSPLRNRKGEITSTYNGIFYKTIYMLENDIT 74
Query: 370 PIYVFDGKPPTLKSGELNKRMEKREDAQKALAKAQEQGKLKWSDPDEDGLVKYLCGDKNF 429
P++VFDGKPP LK +R + RE A++ KA+E + D + KY NF
Sbjct: 75 PVWVFDGKPPKLKEKTREERRKMREKAKEEFTKAKEMENI-------DEMQKY-AKRMNF 126
Query: 430 AEDRIRNGAKKLL 442
I +KKLL
Sbjct: 127 LTKDIVENSKKLL 139
Score = 47.0 bits (110), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 46/75 (61%), Gaps = 12/75 (16%)
Query: 232 FIDLCILLGCDYC-DSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGWLYKEARE 290
ID+ IL+G DY ++GIGPK+A+E++K ++ E L+ ++ Y+E +
Sbjct: 214 LIDMAILIGTDYNPKGVKGIGPKKALEIVK-SKNKELYLKAVEN----------YEEIKN 262
Query: 291 LFRHPEIADPETIEL 305
+F++P++ D +I+L
Sbjct: 263 IFKNPKVTDEYSIKL 277
>gi|52548675|gb|AAU82524.1| DNA repair protein [uncultured archaeon GZfos18C8]
Length = 190
Score = 84.3 bits (207), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 49/144 (34%), Positives = 77/144 (53%), Gaps = 15/144 (10%)
Query: 62 PCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVLEG 121
P E EAQ A M ++G V ++D D+L FG+ ++R++ RKLP ++ +++ LE
Sbjct: 1 PSEGEAQAARMARSGDVRFVGSQDYDSLLFGAPEVVRNLAVGGKRKLPGKKVYVDVKLEI 60
Query: 122 MEL---------SHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTK 172
+EL + E+ ID+ IL+G DY I GIG K+A++LI +H SIE L +
Sbjct: 61 IELQPNLDRLGITEEQLIDIAILVGTDYDPGIHGIGAKKALQLIYKHGSIEDALSILGES 120
Query: 173 KYTVPEGWLYKEARELFRHPEVAD 196
+ E + F P+V D
Sbjct: 121 IEDL------DEIKNFFLDPDVTD 138
Score = 44.3 bits (103), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 35/68 (51%), Gaps = 6/68 (8%)
Query: 232 FIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGWLYKEAREL 291
ID+ IL+G DY I GIG K+A++LI +H SIE L + + E +
Sbjct: 77 LIDIAILVGTDYDPGIHGIGAKKALQLIYKHGSIEDALSILGESIEDL------DEIKNF 130
Query: 292 FRHPEIAD 299
F P++ D
Sbjct: 131 FLDPDVTD 138
>gi|256810959|ref|YP_003128328.1| flap endonuclease-1 [Methanocaldococcus fervens AG86]
gi|256794159|gb|ACV24828.1| flap structure-specific endonuclease [Methanocaldococcus fervens
AG86]
Length = 326
Score = 84.3 bits (207), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 46/137 (33%), Positives = 81/137 (59%), Gaps = 14/137 (10%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVLE 120
AP E EAQ + M K G V+A ++D DAL +G+ ++R++T + +++P + L +VLE
Sbjct: 149 APSEGEAQASYMAKKGDVWAVVSQDYDALLYGAPRVVRNLTTT--KEMP-ELIELNEVLE 205
Query: 121 GMELSHEEFIDLCILLGCDYC-DSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEG 179
+ +S ++ ID+ I +G DY ++GIG KRA EL++ + E + + ++
Sbjct: 206 DLRISLDDLIDIAIFIGTDYNPGGVKGIGFKRAYELVRSGVAKEVLKKEVEN-------- 257
Query: 180 WLYKEARELFRHPEVAD 196
Y+E R +F+ P+V D
Sbjct: 258 --YEEIRRIFKEPKVTD 272
Score = 74.7 bits (182), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 38/92 (41%), Positives = 58/92 (63%), Gaps = 1/92 (1%)
Query: 316 ESRKICIDASMSLYQFLIAVR-SEGNQLMSVDGEPTSHLMGTFYRTIRLVEHGLKPIYVF 374
+ +K+ ID +LYQFL ++R +G+ L + GE TS G FY+TI L+E+ + PI+VF
Sbjct: 20 KGKKVAIDGMNALYQFLTSIRLKDGSPLRNRKGEITSAYNGVFYKTIHLLENDITPIWVF 79
Query: 375 DGKPPTLKSGELNKRMEKREDAQKALAKAQEQ 406
DG+PP LK R E +E A+ + +A E+
Sbjct: 80 DGEPPKLKEKTRKFRKEMKEKAELKMKEAIEK 111
Score = 41.2 bits (95), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 41/78 (52%), Gaps = 11/78 (14%)
Query: 229 LYSFIDLCILLGCDYC-DSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGWLYKE 287
L ID+ I +G DY ++GIG KRA EL++ + E + + ++ Y+E
Sbjct: 211 LDDLIDIAIFIGTDYNPGGVKGIGFKRAYELVRSGVAKEVLKKEVEN----------YEE 260
Query: 288 ARELFRHPEIADPETIEL 305
R +F+ P++ D ++ L
Sbjct: 261 IRRIFKEPKVTDNYSLSL 278
>gi|313126141|ref|YP_004036411.1| flap endonuclease 1 [Halogeometricum borinquense DSM 11551]
gi|448285981|ref|ZP_21477218.1| flap endonuclease-1 [Halogeometricum borinquense DSM 11551]
gi|312292506|gb|ADQ66966.1| flap endonuclease 1 [Halogeometricum borinquense DSM 11551]
gi|445575574|gb|ELY30047.1| flap endonuclease-1 [Halogeometricum borinquense DSM 11551]
Length = 326
Score = 84.3 bits (207), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 49/137 (35%), Positives = 69/137 (50%), Gaps = 10/137 (7%)
Query: 60 KAPCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVL 119
+AP E EAQ + M K G V +ED D L G+ LR +T +L LE L
Sbjct: 150 EAPAEGEAQASYMAKQGDVDYVGSEDYDTLLLGAPYTLRQLTSKGDPEL----MDLEATL 205
Query: 120 EGMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEG 179
++++ E+ ID+ IL G D+ + I G+GPK A++ +KEH + +LE D
Sbjct: 206 SDLDVTQEQLIDIAILCGTDFNEGISGVGPKTALKEVKEHGDLWTVLEARDDYIENA--- 262
Query: 180 WLYKEARELFRHPEVAD 196
RELFR P V D
Sbjct: 263 ---DRVRELFRDPPVTD 276
Score = 49.3 bits (116), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 40/80 (50%), Gaps = 8/80 (10%)
Query: 232 FIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGWLYKEAREL 291
ID+ IL G D+ + I G+GPK A++ +KEH + +LE D REL
Sbjct: 215 LIDIAILCGTDFNEGISGVGPKTALKEVKEHGDLWTVLEARDDYIENA------DRVREL 268
Query: 292 FRHPEIADPETIELVADVAP 311
FR P + D E D++P
Sbjct: 269 FRDPPVTD--DYEFDTDLSP 286
Score = 48.1 bits (113), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 44/76 (57%), Gaps = 2/76 (2%)
Query: 320 ICIDASMSLYQFLIA-VRSEGNQL-MSVDGEPTSHLMGTFYRTIRLVEHGLKPIYVFDGK 377
+ +DA LY++L V+ G+++ + +GE ++L+G + EH L P++VFDG
Sbjct: 25 VAVDAHNWLYRYLTTTVKFTGDEVYTTTEGEEVANLIGIVQGLPKFFEHDLTPVFVFDGG 84
Query: 378 PPTLKSGELNKRMEKR 393
LK E+++R +R
Sbjct: 85 VTELKDAEVSERRAQR 100
>gi|45358876|ref|NP_988433.1| flap endonuclease-1 [Methanococcus maripaludis S2]
gi|45047742|emb|CAF30869.1| flap endonuclease [Methanococcus maripaludis S2]
Length = 324
Score = 84.0 bits (206), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 44/136 (32%), Positives = 76/136 (55%), Gaps = 15/136 (11%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVLE 120
AP E EAQCA +VKA + ++D D++ +G+ +++++T S ++ LEK L
Sbjct: 149 APSEGEAQCAELVKANNAFCVISQDYDSILYGAENVVKNITSSNK---DIELIELEKTLS 205
Query: 121 GMELSHEEFIDLCILLGCDYC-DSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEG 179
G+ +S ++ ID IL+G DY ++G GPK+AI+ +K+ + +E + I+
Sbjct: 206 GLNISRDQLIDAAILIGTDYNPGGLKGFGPKKAIDTVKKGK-MENYISEIEN-------- 256
Query: 180 WLYKEARELFRHPEVA 195
Y E R++F P V
Sbjct: 257 --YSEIRKIFDEPNVT 270
Score = 73.2 bits (178), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 45/127 (35%), Positives = 73/127 (57%), Gaps = 9/127 (7%)
Query: 317 SRKICIDASMSLYQFLIAVR-SEGNQLMSVDGEPTSHLMGTFYRTIRLVEHGLKPIYVFD 375
++ + IDA +YQFL ++R +G+ L + +G+ TS G FY+TI ++E+G+ PI+VFD
Sbjct: 21 NKTVAIDAMNVIYQFLSSIRLRDGSPLKNKNGDITSTYNGIFYKTIYMLENGMTPIWVFD 80
Query: 376 GKPPTLKSGELNKRMEKREDAQKALAKAQEQGKLKWSDPDEDGLVKYLCGDKNFAEDRIR 435
GK LK +R + RE A + +A+EQ L + + KY NF + +
Sbjct: 81 GKSHELKEKTKEERRKSREGALDSYMEAKEQNNL-------EEMQKY-AKRANFLDKKTV 132
Query: 436 NGAKKLL 442
+ +KKLL
Sbjct: 133 DNSKKLL 139
>gi|170116712|ref|XP_001889546.1| predicted protein [Laccaria bicolor S238N-H82]
gi|164635548|gb|EDQ99854.1| predicted protein [Laccaria bicolor S238N-H82]
Length = 103
Score = 84.0 bits (206), Expect = 2e-13, Method: Composition-based stats.
Identities = 38/88 (43%), Positives = 61/88 (69%), Gaps = 2/88 (2%)
Query: 74 KAGKVYATATEDMDALTFG--SNILLRHMTFSEARKLPVQEFHLEKVLEGMELSHEEFID 131
+ GK+Y T ++DMDALTF + IL R++TF EA+K P+ E +L++ E + ++ + D
Sbjct: 13 RGGKMYTTDSDDMDALTFNAPTGILFRYLTFPEAKKQPISEINLKEAFEVLVMNMSQLFD 72
Query: 132 LCILLGCDYCDSIRGIGPKRAIELIKEH 159
CI LG DY + I+ +GPK A++LI+E+
Sbjct: 73 QCIPLGRDYLEPIKDVGPKFALKLIREY 100
>gi|284162570|ref|YP_003401193.1| XPG I domain-containing protein [Archaeoglobus profundus DSM 5631]
gi|284012567|gb|ADB58520.1| XPG I domain protein [Archaeoglobus profundus DSM 5631]
Length = 335
Score = 84.0 bits (206), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 57/172 (33%), Positives = 89/172 (51%), Gaps = 18/172 (10%)
Query: 60 KAPCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFH----- 114
+AP E EAQ A +V+ G T ++D D+L FGS L R++ + RKLP + +
Sbjct: 145 QAPSEGEAQAAYIVRKGDADYTGSQDYDSLLFGSPRLARNLAITGRRKLPGKNVYTEVKP 204
Query: 115 ----LEKVLEGMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENID 170
LE L+ + ++ E+ ID+ +L+G DY + + GIG K+A + +K + I K+L +
Sbjct: 205 EVIDLEYNLKKLGITREQLIDIALLVGTDYNEGVEGIGVKKAYKYVKAYGDIFKVLRVLK 264
Query: 171 TKKYTVPEGWLYKEARELFRHPEVADPETIEF----IDLCILLGCDYCDSIR 218
K V E +E R F +P V D I+F +D I C+ D R
Sbjct: 265 VK---VEEP--IEEIRNFFLNPPVTDDYEIKFREPNVDGIIEFLCEEHDFSR 311
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 40/82 (48%), Positives = 53/82 (64%), Gaps = 1/82 (1%)
Query: 317 SRKICIDASMSLYQFLIAVR-SEGNQLMSVDGEPTSHLMGTFYRTIRLVEHGLKPIYVFD 375
+KI IDA +LYQFL +R +G LM G TSHL G YR +VE G+KPI+VFD
Sbjct: 21 GKKIAIDAFNTLYQFLATIRQPDGTPLMDSKGRITSHLSGILYRVSNMVEVGIKPIFVFD 80
Query: 376 GKPPTLKSGELNKRMEKREDAQ 397
G+PP K E+ +R + RE+A+
Sbjct: 81 GEPPEFKKKEIERRRKIREEAE 102
Score = 40.8 bits (94), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 37/68 (54%), Gaps = 5/68 (7%)
Query: 232 FIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGWLYKEAREL 291
ID+ +L+G DY + + GIG K+A + +K + I K+L + K V E +E R
Sbjct: 223 LIDIALLVGTDYNEGVEGIGVKKAYKYVKAYGDIFKVLRVLKVK---VEEP--IEEIRNF 277
Query: 292 FRHPEIAD 299
F +P + D
Sbjct: 278 FLNPPVTD 285
>gi|452206818|ref|YP_007486940.1| flap endonuclease Fen1 [Natronomonas moolapensis 8.8.11]
gi|452082918|emb|CCQ36195.1| flap endonuclease Fen1 [Natronomonas moolapensis 8.8.11]
Length = 327
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 49/137 (35%), Positives = 71/137 (51%), Gaps = 10/137 (7%)
Query: 60 KAPCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVL 119
+AP E EAQ A M + G V +ED D L G+ LR +T K + E+ L
Sbjct: 151 EAPAEGEAQAAYMARYGDVDYAGSEDYDTLLLGAPYTLRGLT----SKGDPECMDFERTL 206
Query: 120 EGMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEG 179
E + L+ EE +D IL+G D+ + I GIGPK A++L++EH + L D + ++P
Sbjct: 207 EDLGLTWEELVDAAILMGTDFNEGIDGIGPKTAVKLLREHGDLWGAL---DARGESIPNA 263
Query: 180 WLYKEARELFRHPEVAD 196
RE+F P V D
Sbjct: 264 ---DRIREMFLDPAVTD 277
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/107 (30%), Positives = 52/107 (48%), Gaps = 21/107 (19%)
Query: 206 CILLGCDYCDSIRGIGPK---------RAIELL----YSFIDLCILLGCDYCDSIRGIGP 252
+LLG Y ++RG+ K R +E L +D IL+G D+ + I GIGP
Sbjct: 179 TLLLGAPY--TLRGLTSKGDPECMDFERTLEDLGLTWEELVDAAILMGTDFNEGIDGIGP 236
Query: 253 KRAIELIKEHRSIEKILENIDTKKYTVPEGWLYKEARELFRHPEIAD 299
K A++L++EH + L D + ++P RE+F P + D
Sbjct: 237 KTAVKLLREHGDLWGAL---DARGESIPNA---DRIREMFLDPAVTD 277
Score = 42.4 bits (98), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 40/77 (51%), Gaps = 2/77 (2%)
Query: 320 ICIDASMSLYQFLIA-VR-SEGNQLMSVDGEPTSHLMGTFYRTIRLVEHGLKPIYVFDGK 377
+ +DA LY++L VR + + + GE ++L+G + E + P++VFDG
Sbjct: 25 VAVDAHNWLYRYLTTTVRFTSSDTYTTESGEEVANLVGVVQGLPKFFEADVTPVFVFDGG 84
Query: 378 PPTLKSGELNKRMEKRE 394
LK E+ R E+RE
Sbjct: 85 VAELKDDEVESRREQRE 101
>gi|344211083|ref|YP_004795403.1| flap endonuclease-1 [Haloarcula hispanica ATCC 33960]
gi|343782438|gb|AEM56415.1| flap endonuclease-1 [Haloarcula hispanica ATCC 33960]
Length = 326
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 52/145 (35%), Positives = 71/145 (48%), Gaps = 14/145 (9%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVLE 120
AP E E Q + M + G V TED DAL FG+ + LR +T +L E LE
Sbjct: 151 APAEGEGQASVMARRGDVDYVGTEDYDALLFGAPMTLRQITSKGDPEL----MDFEATLE 206
Query: 121 GMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGW 180
+L+ E+ +D IL+G D+ + I GIGPK A+ + EH + +LE D
Sbjct: 207 QHDLTWEQLVDAAILMGTDFNEGISGIGPKTAVTELHEHGDLYAVLEARDEHIDHA---- 262
Query: 181 LYKEARELFRHPEVAD----PETIE 201
R LF PEV D P++IE
Sbjct: 263 --DRIRNLFLDPEVTDDYEIPDSIE 285
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 38/113 (33%), Positives = 59/113 (52%), Gaps = 5/113 (4%)
Query: 298 ADPETIELVADVAPSSIRESRKICIDASMSLYQFL---IAVRSEGNQLMSVDGEPTSHLM 354
AD ++ ++DV+ + S + +DA LY++L + SE S DGE ++L+
Sbjct: 4 ADLRSLAALSDVSFGDLGGS-VVAVDAHNWLYRYLTTTVKFTSESKYTTS-DGEEVANLI 61
Query: 355 GTFYRTIRLVEHGLKPIYVFDGKPPTLKSGELNKRMEKREDAQKALAKAQEQG 407
G + EH L P++VFDG LK E+ KR E+RE + L A+E G
Sbjct: 62 GVIQGLPKFFEHDLTPVFVFDGAVTDLKDDEVEKRREQREKYESELEAAREAG 114
Score = 47.8 bits (112), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 45/96 (46%), Gaps = 10/96 (10%)
Query: 232 FIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGWLYKEAREL 291
+D IL+G D+ + I GIGPK A+ + EH + +LE D R L
Sbjct: 215 LVDAAILMGTDFNEGISGIGPKTAVTELHEHGDLYAVLEARDEHIDHA------DRIRNL 268
Query: 292 FRHPEIAD----PETIELVADVAPSSIRESRKICID 323
F PE+ D P++IE D A + + + ++ D
Sbjct: 269 FLDPEVTDDYEIPDSIEPDVDAARAFVTDKWEVDAD 304
Score = 43.5 bits (101), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 30/110 (27%), Positives = 49/110 (44%), Gaps = 25/110 (22%)
Query: 195 ADPETIEF--------------IDLCILLGCDYCDSIRGIGPKRAIELLYSFIDLCILLG 240
DPE ++F +D IL+G D+ + I GIGPK A+ L+ DL +L
Sbjct: 194 GDPELMDFEATLEQHDLTWEQLVDAAILMGTDFNEGISGIGPKTAVTELHEHGDLYAVLE 253
Query: 241 C-----DYCDSIRG--IGPKRAIELIKEHRSIEKILENIDTKKYTVPEGW 283
D+ D IR + P E+ ++ + I ++D + V + W
Sbjct: 254 ARDEHIDHADRIRNLFLDP----EVTDDYEIPDSIEPDVDAARAFVTDKW 299
>gi|428168266|gb|EKX37213.1| hypothetical protein GUITHDRAFT_40221, partial [Guillardia theta
CCMP2712]
Length = 305
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 62/189 (32%), Positives = 100/189 (52%), Gaps = 13/189 (6%)
Query: 29 RNGAKKLLKARSSTTQGRLDSFFTIRREEKRK---APCEAEAQCAAMVKAGKVYATATED 85
R+GA K L+ T +F + EK +P EA+AQ + MV+ G A +ED
Sbjct: 112 RSGALKCLQQSIHVTAEMAHAFHARLQSEKVTCIVSPYEADAQMSYMVRKGMAQAVISED 171
Query: 86 MDALTFGSNILLRHMTFSEA----RKLPVQEFHLEKVLEGMELSHEEFIDLCILLGCDYC 141
D + FG +++L M S + P+ E + +K ++ +LS + I +CIL GCDY
Sbjct: 172 SDMVPFGVDMILYKMDTSGSCCIFENKPLGEGN-KKSMDVSKLSGDARIHMCILAGCDYL 230
Query: 142 DSIRGIGPKRAIELIKEHRSIEKILENIDTK---KYTVPEGW--LYKEARELFRHPEVAD 196
SI GIG ++A LI+EH +K +E + K VP+G+ ++ A +LF+H V D
Sbjct: 231 QSIPGIGIQKAYGLIREHGDGKKAIEALRKHPKMKEKVPDGYEDAFERAEKLFKHQWVYD 290
Query: 197 PETIEFIDL 205
E + +++
Sbjct: 291 MEERKLVNM 299
Score = 54.3 bits (129), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/79 (40%), Positives = 47/79 (59%), Gaps = 5/79 (6%)
Query: 233 IDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTK---KYTVPEGW--LYKE 287
I +CIL GCDY SI GIG ++A LI+EH +K +E + K VP+G+ ++
Sbjct: 219 IHMCILAGCDYLQSIPGIGIQKAYGLIREHGDGKKAIEALRKHPKMKEKVPDGYEDAFER 278
Query: 288 ARELFRHPEIADPETIELV 306
A +LF+H + D E +LV
Sbjct: 279 AEKLFKHQWVYDMEERKLV 297
>gi|448374758|ref|ZP_21558548.1| flap endonuclease-1 [Halovivax asiaticus JCM 14624]
gi|445659884|gb|ELZ12686.1| flap endonuclease-1 [Halovivax asiaticus JCM 14624]
Length = 326
Score = 83.6 bits (205), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 49/137 (35%), Positives = 71/137 (51%), Gaps = 10/137 (7%)
Query: 60 KAPCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVL 119
+AP E EAQ A +V+ G +ED DAL FGS LR +T +L L+ L
Sbjct: 150 EAPAEGEAQAANIVRNGDADYVGSEDYDALLFGSPRTLRQLTSKGDPEL----MDLQATL 205
Query: 120 EGMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEG 179
+ +L+ E+ ID+ I++G D+ + G+GPK A+ L+ EH + LE + V G
Sbjct: 206 DDHDLTLEQLIDVAIMIGTDFNHGVDGVGPKTALSLVHEHGDLWSALE---ARGDHVEYG 262
Query: 180 WLYKEARELFRHPEVAD 196
R+LFR P V D
Sbjct: 263 ---DRVRQLFRDPNVTD 276
Score = 55.8 bits (133), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 49/94 (52%), Gaps = 2/94 (2%)
Query: 316 ESRKICIDASMSLYQFLIAV--RSEGNQLMSVDGEPTSHLMGTFYRTIRLVEHGLKPIYV 373
E + +DA LY++L + + + DG ++L+G + EH + P+ V
Sbjct: 21 EGSVVAVDAHNWLYRYLTTTVKWTNSSTYTTPDGTEVANLVGMVQGLPKFFEHDIVPVMV 80
Query: 374 FDGKPPTLKSGELNKRMEKREDAQKALAKAQEQG 407
FDG P LK+ E+ R E+RE ++ L A+E+G
Sbjct: 81 FDGGPSDLKTDEIESRREQRESYEEQLEVAREEG 114
Score = 48.1 bits (113), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 42/93 (45%), Gaps = 8/93 (8%)
Query: 229 LYSFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGWLYKEA 288
L ID+ I++G D+ + G+GPK A+ L+ EH + LE + V G
Sbjct: 212 LEQLIDVAIMIGTDFNHGVDGVGPKTALSLVHEHGDLWSALE---ARGDHVEYG---DRV 265
Query: 289 RELFRHPEIADPETIELVADVAPSSIRESRKIC 321
R+LFR P + D E D+ P +C
Sbjct: 266 RQLFRDPNVTD--DYEFTTDLDPDVAAARDYVC 296
>gi|307594203|ref|YP_003900520.1| flap structure-specific endonuclease [Vulcanisaeta distributa DSM
14429]
gi|307549404|gb|ADN49469.1| flap structure-specific endonuclease [Vulcanisaeta distributa DSM
14429]
Length = 349
Score = 83.6 bits (205), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 42/93 (45%), Positives = 59/93 (63%), Gaps = 1/93 (1%)
Query: 317 SRKICIDASMSLYQFLIAVR-SEGNQLMSVDGEPTSHLMGTFYRTIRLVEHGLKPIYVFD 375
+R + +DA +LYQFL ++R +G LM G TSHL G YRTI +E+ + P+YVFD
Sbjct: 25 NRIVALDAYNALYQFLASIRQPDGTPLMDSKGRITSHLSGLLYRTINFLENRIWPVYVFD 84
Query: 376 GKPPTLKSGELNKRMEKREDAQKALAKAQEQGK 408
GKPP K+ E+ +R + RE+A K E+GK
Sbjct: 85 GKPPEEKTLEIARRRKVREEAMDKWVKLLEEGK 117
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 53/154 (34%), Positives = 83/154 (53%), Gaps = 14/154 (9%)
Query: 60 KAPCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQE------- 112
+A + EAQ A + + GK +A ++D D+L FG+ L+R++ + RKLP ++
Sbjct: 152 QAMADGEAQAAVIAREGKAWAAGSQDYDSLLFGAPRLVRNLAITGRRKLPNKDEYIEIKP 211
Query: 113 --FHLEKVLEGMEL-SHEEFIDLCILLGCDYC-DSIRGIGPKRAIELIKEHRSIEKILEN 168
L +VL+ ++L + IDL ILLG D D + GIGP+RA+ LI+E +EK+L+
Sbjct: 212 EIIELNEVLKALKLKDRTQLIDLAILLGTDLNPDGVPGIGPQRALRLIQEFGGLEKLLQG 271
Query: 169 IDTKKYTVPEGWLYKEARELFRHPEVADPETIEF 202
K P L + R+ F +P IEF
Sbjct: 272 -PLKNAQFPTDPL--KIRDYFLNPPYNPNYKIEF 302
Score = 46.6 bits (109), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 33/50 (66%)
Query: 408 KLKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSTTTQGRLDSFF 457
K+++ PDE G+V++L + +F E+R+RN ++L KA + LDSFF
Sbjct: 299 KIEFGQPDERGIVEFLVHEHDFNEERVRNAIERLKKAMGKRRESTLDSFF 348
Score = 45.1 bits (105), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 32/49 (65%)
Query: 3 LKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSSTTQGRLDSFF 51
+++ PDE G+V++L + +F E+R+RN ++L KA + LDSFF
Sbjct: 300 IEFGQPDERGIVEFLVHEHDFNEERVRNAIERLKKAMGKRRESTLDSFF 348
Score = 44.7 bits (104), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 21/40 (52%), Positives = 28/40 (70%), Gaps = 1/40 (2%)
Query: 232 FIDLCILLGCDYC-DSIRGIGPKRAIELIKEHRSIEKILE 270
IDL ILLG D D + GIGP+RA+ LI+E +EK+L+
Sbjct: 231 LIDLAILLGTDLNPDGVPGIGPQRALRLIQEFGGLEKLLQ 270
>gi|312137188|ref|YP_004004525.1| flap endonuclease 1 [Methanothermus fervidus DSM 2088]
gi|311224907|gb|ADP77763.1| flap endonuclease 1 [Methanothermus fervidus DSM 2088]
Length = 327
Score = 83.6 bits (205), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 42/119 (35%), Positives = 73/119 (61%), Gaps = 2/119 (1%)
Query: 60 KAPCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVL 119
+AP E EAQ +VK G +A A++D D L FG+ ++R++ S L + E L+K+L
Sbjct: 148 QAPNEGEAQAVYLVKNGDAWAVASQDYDCLLFGAPRVIRNLAISSDINLELLE--LDKIL 205
Query: 120 EGMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPE 178
+ + +S E+ ID+ +L+G D+ ++GIG KR +ELIK+ I +++ ++ + PE
Sbjct: 206 KKLGISREQLIDIALLVGTDFNPGVKGIGAKRGLELIKKFGDIYTVIKRMNLEVDFDPE 264
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 42/95 (44%), Positives = 59/95 (62%), Gaps = 1/95 (1%)
Query: 316 ESRKICIDASMSLYQFLIAVRS-EGNQLMSVDGEPTSHLMGTFYRTIRLVEHGLKPIYVF 374
E I IDAS +YQFL ++R +G LM G TSHL+G +RT LVE+ +KP+YVF
Sbjct: 20 EGLTIAIDASNWIYQFLSSIRQRDGTPLMDRKGRVTSHLVGILHRTSALVENNIKPVYVF 79
Query: 375 DGKPPTLKSGELNKRMEKREDAQKALAKAQEQGKL 409
DGK LKS +++R R +A+K +A ++ L
Sbjct: 80 DGKSLALKSETISERTRMRLEAEKRWKEALKKKDL 114
Score = 40.0 bits (92), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 31/50 (62%)
Query: 232 FIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPE 281
ID+ +L+G D+ ++GIG KR +ELIK+ I +++ ++ + PE
Sbjct: 215 LIDIALLVGTDFNPGVKGIGAKRGLELIKKFGDIYTVIKRMNLEVDFDPE 264
>gi|52549222|gb|AAU83071.1| DNA repair protein [uncultured archaeon GZfos26E7]
Length = 339
Score = 83.2 bits (204), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 51/150 (34%), Positives = 80/150 (53%), Gaps = 23/150 (15%)
Query: 60 KAPCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVL 119
+A E EAQ A M ++G V ++D D+L FG+ ++R++ RKLP + +++ L
Sbjct: 148 EAASEGEAQAARMARSGDVRFVGSQDYDSLLFGAPEVVRNLAVGGKRKLPGKNVYVDVKL 207
Query: 120 EGMEL---------SHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKIL---- 166
E +EL + E+ ID+ IL+G DY I GIG K+A++LI +H SIE L
Sbjct: 208 EIIELQPNLDRLGITQEQLIDIAILVGTDYDPGIHGIGAKKALQLIYKHGSIEDALPILG 267
Query: 167 ENIDTKKYTVPEGWLYKEARELFRHPEVAD 196
E+I+ E + F +P+V D
Sbjct: 268 ESIEH----------LDEIKNFFLNPDVTD 287
Score = 74.7 bits (182), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 38/90 (42%), Positives = 53/90 (58%), Gaps = 1/90 (1%)
Query: 320 ICIDASMSLYQFLIAVRS-EGNQLMSVDGEPTSHLMGTFYRTIRLVEHGLKPIYVFDGKP 378
+ IDA ++YQFL ++R +G L G TSHL G YRT LVE GLK ++VFDG P
Sbjct: 25 VAIDAYNTIYQFLSSIRQRDGTPLKDSRGRVTSHLSGLLYRTTNLVEAGLKLVFVFDGVP 84
Query: 379 PTLKSGELNKRMEKREDAQKALAKAQEQGK 408
P K+ + KR + R+ A + +A G+
Sbjct: 85 PDFKAATIEKRRKIRDTADREWKEALAAGR 114
Score = 45.1 bits (105), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 38/72 (52%), Gaps = 14/72 (19%)
Query: 232 FIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKIL----ENIDTKKYTVPEGWLYKE 287
ID+ IL+G DY I GIG K+A++LI +H SIE L E+I+ E
Sbjct: 226 LIDIAILVGTDYDPGIHGIGAKKALQLIYKHGSIEDALPILGESIEH----------LDE 275
Query: 288 ARELFRHPEIAD 299
+ F +P++ D
Sbjct: 276 IKNFFLNPDVTD 287
Score = 38.9 bits (89), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 28/49 (57%)
Query: 2 TLKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSSTTQGRLDSF 50
+L W PDE + + LC + F+E R+ ++L++A S +Q LD +
Sbjct: 290 SLTWKKPDESKIAELLCHEHGFSEVRVAKAVERLVRASDSMSQSTLDMW 338
>gi|193083976|gb|ACF09651.1| XPG I flap structure-specific endonuclease [uncultured marine
crenarchaeote AD1000-56-E4]
gi|193084049|gb|ACF09722.1| XPG I flap structure-specific endonuclease [uncultured marine
crenarchaeote KM3-86-C1]
Length = 341
Score = 83.2 bits (204), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 40/94 (42%), Positives = 57/94 (60%), Gaps = 1/94 (1%)
Query: 317 SRKICIDASMSLYQFLIAVRS-EGNQLMSVDGEPTSHLMGTFYRTIRLVEHGLKPIYVFD 375
S+ I IDA ++YQFL +R +G L G TSHL G YR + + G+KP+YVFD
Sbjct: 21 SKIIAIDAYNAIYQFLAIIRGPDGLHLTDSKGRVTSHLTGLLYRNVNFLSMGIKPVYVFD 80
Query: 376 GKPPTLKSGELNKRMEKREDAQKALAKAQEQGKL 409
GKPP+LK+ E+ +R +++A KA+ G L
Sbjct: 81 GKPPSLKTAEIERRKLGKKEATIKYEKAKASGDL 114
Score = 82.0 bits (201), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 56/182 (30%), Positives = 90/182 (49%), Gaps = 27/182 (14%)
Query: 60 KAPCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLE--- 116
+A + EA A M K G A A++D D++ FG+ L+R+ T S RKLP + +++
Sbjct: 148 QAKADGEATAAYMNKNGMADAVASQDFDSILFGAVKLIRNFTNSGRRKLPNRNTYIDIEP 207
Query: 117 ------KVLEGMELSHEEFIDLCILLGCDYC-DSIRGIGPKRAIELIKEHRSIEKI---- 165
K L+ + ++ E+ ID+ IL+G D+ D IGPK A+++IKE+ +E I
Sbjct: 208 EIISYQKSLDALGITGEQIIDIGILIGTDFNPDGFERIGPKTALKMIKEYGKLEDIPKIQ 267
Query: 166 --LENIDTKKYTVPEGWLYKEARELFRHPEVADPETIEFIDLCILLGCDYCDSIRGIGPK 223
LE +D YK+ R++F + + IEF D DY + R +
Sbjct: 268 EELEQVD-----------YKQIRKIFLQADTPNVGKIEFKDTDYSGIVDYLSNERDFSEE 316
Query: 224 RA 225
R
Sbjct: 317 RV 318
>gi|448397895|ref|ZP_21569833.1| flap endonuclease-1 [Haloterrigena limicola JCM 13563]
gi|445672111|gb|ELZ24688.1| flap endonuclease-1 [Haloterrigena limicola JCM 13563]
Length = 325
Score = 83.2 bits (204), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 50/137 (36%), Positives = 70/137 (51%), Gaps = 10/137 (7%)
Query: 60 KAPCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVL 119
+AP E EAQ A M K G +ED DAL FG+ LR +T +L LE L
Sbjct: 149 EAPAEGEAQAAHMAKRGDADYVGSEDYDALLFGAPRTLRQLTSKGDPEL----MDLEATL 204
Query: 120 EGMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEG 179
+ +L+ E+ ID IL+G D+ + + GIGPK A+ I +H + +LE + + G
Sbjct: 205 DHHDLTLEQLIDAAILIGTDFNEGVSGIGPKTALSEIADHGDLWSVLE---ARGDHIDHG 261
Query: 180 WLYKEARELFRHPEVAD 196
R+LFR P V D
Sbjct: 262 ---DRVRQLFRDPNVTD 275
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 46/90 (51%), Gaps = 2/90 (2%)
Query: 320 ICIDASMSLYQFLIAV--RSEGNQLMSVDGEPTSHLMGTFYRTIRLVEHGLKPIYVFDGK 377
+ +DA LY++L ++ + DG ++L+G + E+ + P+ VFDG
Sbjct: 24 VAVDAHNWLYRYLTTTVKWTDSETYTTADGTEVANLVGIVQGLPKFFENDVTPVMVFDGG 83
Query: 378 PPTLKSGELNKRMEKREDAQKALAKAQEQG 407
P LK E+ R E+R ++ L A+E+G
Sbjct: 84 PSELKDDEIESRREQRRSYEEQLETAREEG 113
Score = 47.0 bits (110), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 36/71 (50%), Gaps = 6/71 (8%)
Query: 229 LYSFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGWLYKEA 288
L ID IL+G D+ + + GIGPK A+ I +H + +LE + + G
Sbjct: 211 LEQLIDAAILIGTDFNEGVSGIGPKTALSEIADHGDLWSVLE---ARGDHIDHG---DRV 264
Query: 289 RELFRHPEIAD 299
R+LFR P + D
Sbjct: 265 RQLFRDPNVTD 275
>gi|297619418|ref|YP_003707523.1| flap structure-specific endonuclease [Methanococcus voltae A3]
gi|297378395|gb|ADI36550.1| flap structure-specific endonuclease [Methanococcus voltae A3]
Length = 327
Score = 83.2 bits (204), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 42/135 (31%), Positives = 83/135 (61%), Gaps = 14/135 (10%)
Query: 63 CEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVLEGM 122
E EAQCA +VK G +A ++D D+L +G++ ++R++T S +++ + L+ VL+ +
Sbjct: 151 SEGEAQCAEIVKKGDAFAVVSQDYDSLLYGADRVIRNITSSSSKEF--EYIELKDVLDEL 208
Query: 123 ELSHEEFIDLCILLGCDYC-DSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGWL 181
+++ + ID+ IL+G DY ++G+GPK+A++++K ++ +KY PE
Sbjct: 209 DINRSQLIDMSILIGTDYNPKGVKGLGPKKALDVVKNNQ----------MEKYA-PEIEN 257
Query: 182 YKEARELFRHPEVAD 196
Y E R++F P +++
Sbjct: 258 YSEIRKIFDEPVLSE 272
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 40/86 (46%), Positives = 56/86 (65%), Gaps = 4/86 (4%)
Query: 317 SRKICIDASMSLYQFLIAVR-SEGNQLMSVDGEPTSHLMGTFYRTIRLVEHGLKPIYVFD 375
++KI IDA +YQFL ++R +G L + GE TS G FY+TI ++E GL PI+VFD
Sbjct: 21 NKKIVIDAMNVIYQFLSSIRLRDGTPLKNSSGETTSAYNGIFYKTINMLEMGLTPIWVFD 80
Query: 376 GKPPTLKSGELNKRMEKREDAQKALA 401
G+ LK E+ R E+R+ QKAL+
Sbjct: 81 GQAHELK--EIT-REERRKTRQKALS 103
Score = 42.7 bits (99), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 40/69 (57%), Gaps = 12/69 (17%)
Query: 232 FIDLCILLGCDYC-DSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGWLYKEARE 290
ID+ IL+G DY ++G+GPK+A++++K ++ +KY PE Y E R+
Sbjct: 215 LIDMSILIGTDYNPKGVKGLGPKKALDVVKNNQ----------MEKYA-PEIENYSEIRK 263
Query: 291 LFRHPEIAD 299
+F P +++
Sbjct: 264 IFDEPVLSE 272
>gi|340624624|ref|YP_004743077.1| flap endonuclease-1 [Methanococcus maripaludis X1]
gi|339904892|gb|AEK20334.1| flap endonuclease-1 [Methanococcus maripaludis X1]
Length = 324
Score = 83.2 bits (204), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 44/136 (32%), Positives = 77/136 (56%), Gaps = 15/136 (11%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVLE 120
AP E EAQCA +VKA + ++D D++ +G++ +++++T S ++ LEK L
Sbjct: 149 APSEGEAQCAELVKANNAFCVISQDYDSILYGADYVVKNITSSNK---DIELIELEKTLS 205
Query: 121 GMELSHEEFIDLCILLGCDYC-DSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEG 179
G+ +S ++ ID IL+G DY ++G GPK+AI+ +K+ + +E + I+
Sbjct: 206 GLNISCDQLIDAAILIGTDYNPGGLKGFGPKKAIDTVKKGK-MENYISEIEN-------- 256
Query: 180 WLYKEARELFRHPEVA 195
Y E R++F P V
Sbjct: 257 --YSEIRKIFDEPNVT 270
Score = 72.8 bits (177), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 45/127 (35%), Positives = 73/127 (57%), Gaps = 9/127 (7%)
Query: 317 SRKICIDASMSLYQFLIAVR-SEGNQLMSVDGEPTSHLMGTFYRTIRLVEHGLKPIYVFD 375
++ + IDA +YQFL ++R +G+ L + +G+ TS G FY+TI ++E+G+ PI+VFD
Sbjct: 21 NKTVAIDAMNVIYQFLSSIRLRDGSPLKNKNGDITSTYNGIFYKTIYMLENGMTPIWVFD 80
Query: 376 GKPPTLKSGELNKRMEKREDAQKALAKAQEQGKLKWSDPDEDGLVKYLCGDKNFAEDRIR 435
GK LK +R + RE A + +A+EQ L + + KY NF + +
Sbjct: 81 GKSHELKEKTKEERRKSREGALDSYMEAKEQNNL-------EEMQKY-AKRANFLDRKTV 132
Query: 436 NGAKKLL 442
+ +KKLL
Sbjct: 133 DNSKKLL 139
>gi|327401884|ref|YP_004342723.1| Flap structure-specific endonuclease [Archaeoglobus veneficus SNP6]
gi|327317392|gb|AEA48008.1| Flap structure-specific endonuclease [Archaeoglobus veneficus SNP6]
Length = 338
Score = 83.2 bits (204), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 46/152 (30%), Positives = 82/152 (53%), Gaps = 15/152 (9%)
Query: 60 KAPCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVL 119
+AP E EAQ A M G V T ++D D+L FGS L R++ + RKLP + ++E
Sbjct: 147 QAPSEGEAQAAYMAAKGDVDFTGSQDYDSLLFGSPKLARNLAITGKRKLPGKNVYVEVKP 206
Query: 120 EGMEL---------SHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENID 170
E ++L + E+ +D+ +L+G DY + ++G+G K+A + IK + + K L+ +
Sbjct: 207 EIIDLNGNLRRLGITREQLVDIALLVGTDYNEGVKGVGVKKAYKYIKTYGDVFKALKALK 266
Query: 171 TKKYTVPEGWLYKEARELFRHPEVADPETIEF 202
++ + +E R F +P V + ++ F
Sbjct: 267 VEQENI------EEIRNFFLNPPVTNNYSLHF 292
Score = 83.2 bits (204), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 40/93 (43%), Positives = 58/93 (62%), Gaps = 1/93 (1%)
Query: 317 SRKICIDASMSLYQFLIAVR-SEGNQLMSVDGEPTSHLMGTFYRTIRLVEHGLKPIYVFD 375
RKI IDA +LYQF+ +R +G L G TSHL G YR ++E G++PI+VFD
Sbjct: 21 GRKIAIDAFNTLYQFISIIRQPDGTPLKDSQGRMTSHLSGILYRVSNMIEVGMRPIFVFD 80
Query: 376 GKPPTLKSGELNKRMEKREDAQKALAKAQEQGK 408
G+PP K E+ +R E+R +A++ A E+G+
Sbjct: 81 GEPPVFKQKEIEERKERRAEAEEKWIAAIERGE 113
Score = 40.4 bits (93), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 21/89 (23%), Positives = 45/89 (50%), Gaps = 11/89 (12%)
Query: 211 CDYCDSIRGIGPKRAIELLYSFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILE 270
D ++R +G R +D+ +L+G DY + ++G+G K+A + IK + + K L+
Sbjct: 209 IDLNGNLRRLGITRE-----QLVDIALLVGTDYNEGVKGVGVKKAYKYIKTYGDVFKALK 263
Query: 271 NIDTKKYTVPEGWLYKEARELFRHPEIAD 299
+ ++ + +E R F +P + +
Sbjct: 264 ALKVEQENI------EEIRNFFLNPPVTN 286
>gi|170101522|ref|XP_001881978.1| predicted protein [Laccaria bicolor S238N-H82]
gi|164643333|gb|EDR07586.1| predicted protein [Laccaria bicolor S238N-H82]
Length = 103
Score = 83.2 bits (204), Expect = 3e-13, Method: Composition-based stats.
Identities = 39/88 (44%), Positives = 62/88 (70%), Gaps = 2/88 (2%)
Query: 74 KAGKVYATATEDMDALTFG--SNILLRHMTFSEARKLPVQEFHLEKVLEGMELSHEEFID 131
+ GK+YAT ++DMDALTF + IL R++TFSEA+K P+ E +L++ E + ++ + D
Sbjct: 13 RGGKMYATDSDDMDALTFNAPTGILFRYLTFSEAKKQPISEINLKEAFEVLVMNMSQLFD 72
Query: 132 LCILLGCDYCDSIRGIGPKRAIELIKEH 159
I LG DY + I+ +GPK A++LI+E+
Sbjct: 73 QRIPLGRDYLEPIKDVGPKFALKLIREY 100
>gi|448600910|ref|ZP_21656289.1| flap endonuclease-1 [Haloferax alexandrinus JCM 10717]
gi|445734923|gb|ELZ86479.1| flap endonuclease-1 [Haloferax alexandrinus JCM 10717]
Length = 326
Score = 83.2 bits (204), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 45/135 (33%), Positives = 70/135 (51%), Gaps = 10/135 (7%)
Query: 60 KAPCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVL 119
+AP E EAQ + M + G +ED D L FG+ LR +T +L L+ L
Sbjct: 150 EAPAEGEAQASYMARTGDADYVGSEDYDTLLFGAPYTLRQLTSKGNPEL----MDLDATL 205
Query: 120 EGMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEG 179
+ +++HE+ +D+ +L G D+ + I GIGPK A++L+ EH + +LE + T+P
Sbjct: 206 DKHDITHEQLVDIAMLCGTDFNEGITGIGPKTAVKLVTEHGDLWSVLE---ARGDTIPNA 262
Query: 180 WLYKEARELFRHPEV 194
RE F P V
Sbjct: 263 ---DRVREFFLDPPV 274
Score = 56.2 bits (134), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 34/112 (30%), Positives = 59/112 (52%), Gaps = 3/112 (2%)
Query: 298 ADPETIELVADVAPSSIRESRKICIDASMSLYQFLIAV--RSEGNQLMSVDGEPTSHLMG 355
AD T+ +++V+ + S + +DA LY++L + + +GE ++L+G
Sbjct: 4 ADLRTLAALSEVSFDEVSGS-VVAVDAHNWLYRYLTTTVKWTSSETYTTSEGEEVANLVG 62
Query: 356 TFYRTIRLVEHGLKPIYVFDGKPPTLKSGELNKRMEKREDAQKALAKAQEQG 407
+ EH L P++VFDG +K E+ KR E+RE A++ L A+E G
Sbjct: 63 IVQGLPKFFEHDLTPVFVFDGGVTEMKDDEVAKRREQREKAEERLEAAREAG 114
Score = 47.4 bits (111), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 35/66 (53%), Gaps = 6/66 (9%)
Query: 232 FIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGWLYKEAREL 291
+D+ +L G D+ + I GIGPK A++L+ EH + +LE + T+P RE
Sbjct: 215 LVDIAMLCGTDFNEGITGIGPKTAVKLVTEHGDLWSVLE---ARGDTIPNA---DRVREF 268
Query: 292 FRHPEI 297
F P +
Sbjct: 269 FLDPPV 274
>gi|433418201|ref|ZP_20404929.1| flap endonuclease-1 [Haloferax sp. BAB2207]
gi|432199801|gb|ELK55943.1| flap endonuclease-1 [Haloferax sp. BAB2207]
Length = 326
Score = 83.2 bits (204), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 45/135 (33%), Positives = 70/135 (51%), Gaps = 10/135 (7%)
Query: 60 KAPCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVL 119
+AP E EAQ + M + G +ED D L FG+ LR +T +L L+ L
Sbjct: 150 EAPAEGEAQASYMARTGDADYVGSEDYDTLLFGAPYTLRQLTSKGNPEL----MDLDATL 205
Query: 120 EGMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEG 179
+ +++HE+ +D+ +L G D+ + I GIGPK A++L+ EH + +LE + T+P
Sbjct: 206 DKHDITHEQLVDIAMLCGTDFNEGITGIGPKTAVKLVTEHGDLWSVLE---ARGDTIPNA 262
Query: 180 WLYKEARELFRHPEV 194
RE F P V
Sbjct: 263 ---DRVREFFLDPPV 274
Score = 55.8 bits (133), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 34/112 (30%), Positives = 59/112 (52%), Gaps = 3/112 (2%)
Query: 298 ADPETIELVADVAPSSIRESRKICIDASMSLYQFLIAV--RSEGNQLMSVDGEPTSHLMG 355
AD T+ +++V+ + S + +DA LY++L + + +GE ++L+G
Sbjct: 4 ADLRTLAALSEVSFDEVSGS-VVAVDAHNWLYRYLTTTVKWTSSETYTTGEGEEVANLVG 62
Query: 356 TFYRTIRLVEHGLKPIYVFDGKPPTLKSGELNKRMEKREDAQKALAKAQEQG 407
+ EH L P++VFDG +K E+ KR E+RE A++ L A+E G
Sbjct: 63 IVQGLPKFFEHDLTPVFVFDGGVTEMKDDEVAKRREQREKAEERLEAAREAG 114
Score = 47.4 bits (111), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 35/66 (53%), Gaps = 6/66 (9%)
Query: 232 FIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGWLYKEAREL 291
+D+ +L G D+ + I GIGPK A++L+ EH + +LE + T+P RE
Sbjct: 215 LVDIAMLCGTDFNEGITGIGPKTAVKLVTEHGDLWSVLE---ARGDTIPNA---DRVREF 268
Query: 292 FRHPEI 297
F P +
Sbjct: 269 FLDPPV 274
>gi|289192094|ref|YP_003458035.1| flap structure-specific endonuclease [Methanocaldococcus sp.
FS406-22]
gi|288938544|gb|ADC69299.1| flap structure-specific endonuclease [Methanocaldococcus sp.
FS406-22]
Length = 326
Score = 83.2 bits (204), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 45/137 (32%), Positives = 81/137 (59%), Gaps = 14/137 (10%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVLE 120
AP E EAQ + M K G V+A ++D DAL +GS ++R++T + +++P + L +VLE
Sbjct: 149 APSEGEAQASYMAKKGDVWAVVSQDYDALLYGSPRVVRNLTTT--KEMP-ELIELNEVLE 205
Query: 121 GMELSHEEFIDLCILLGCDYC-DSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEG 179
+ +S ++ ID+ I +G DY ++GIG KRA EL++ + + + + ++
Sbjct: 206 DLRISLDDLIDIAIFMGTDYNPGGVKGIGFKRAYELVRSGVAKDVLKKEVEN-------- 257
Query: 180 WLYKEARELFRHPEVAD 196
Y+E + +F+ P+V D
Sbjct: 258 --YEEIKRIFKEPKVTD 272
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 37/89 (41%), Positives = 56/89 (62%), Gaps = 1/89 (1%)
Query: 316 ESRKICIDASMSLYQFLIAVR-SEGNQLMSVDGEPTSHLMGTFYRTIRLVEHGLKPIYVF 374
+ +K+ ID +LYQFL ++R +G+ L + GE TS G FY+TI L+E+ + PI+VF
Sbjct: 20 KGKKVAIDGMNALYQFLTSIRLKDGSPLRNRKGEITSAYNGVFYKTIHLLENDITPIWVF 79
Query: 375 DGKPPTLKSGELNKRMEKREDAQKALAKA 403
DG+PP LK R E +E A+ + +A
Sbjct: 80 DGEPPKLKEKTRKVRREMKEKAELKMKEA 108
Score = 39.3 bits (90), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 21/78 (26%), Positives = 41/78 (52%), Gaps = 11/78 (14%)
Query: 229 LYSFIDLCILLGCDYC-DSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGWLYKE 287
L ID+ I +G DY ++GIG KRA EL++ + + + + ++ Y+E
Sbjct: 211 LDDLIDIAIFMGTDYNPGGVKGIGFKRAYELVRSGVAKDVLKKEVEN----------YEE 260
Query: 288 ARELFRHPEIADPETIEL 305
+ +F+ P++ D ++ L
Sbjct: 261 IKRIFKEPKVTDSYSLSL 278
>gi|448622799|ref|ZP_21669448.1| flap endonuclease-1 [Haloferax denitrificans ATCC 35960]
gi|445753307|gb|EMA04724.1| flap endonuclease-1 [Haloferax denitrificans ATCC 35960]
Length = 326
Score = 82.8 bits (203), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 45/135 (33%), Positives = 71/135 (52%), Gaps = 10/135 (7%)
Query: 60 KAPCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVL 119
+AP E EAQ + M + G +ED D L FG+ LR +T +L L+ L
Sbjct: 150 EAPAEGEAQASYMARKGDADYVGSEDYDTLLFGAPYTLRQLTSKGNPEL----MDLDATL 205
Query: 120 EGMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEG 179
+ +++HE+ +D+ +L G D+ + I GIGPK A++++KEH + +LE + T+P
Sbjct: 206 DKHDITHEQLVDIAMLCGTDFNEGITGIGPKTAVKVVKEHGDLWSVLE---ARGDTIPNA 262
Query: 180 WLYKEARELFRHPEV 194
RE F P V
Sbjct: 263 ---DRVREFFLDPPV 274
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 34/112 (30%), Positives = 60/112 (53%), Gaps = 3/112 (2%)
Query: 298 ADPETIELVADVAPSSIRESRKICIDASMSLYQFLIAV--RSEGNQLMSVDGEPTSHLMG 355
AD T+ +++V+ + S + +DA LY++L + + + +GE ++L+G
Sbjct: 4 ADLRTLAALSEVSFDEVAGS-VVAVDAHNWLYRYLTTTVKWTSSEKYTTTEGEEVANLVG 62
Query: 356 TFYRTIRLVEHGLKPIYVFDGKPPTLKSGELNKRMEKREDAQKALAKAQEQG 407
+ EH L P++VFDG +K E+ KR E+RE A++ L A+E G
Sbjct: 63 IVQGLPKFFEHDLTPVFVFDGGVTEMKDDEVAKRREQREKAEERLEAAREAG 114
Score = 47.8 bits (112), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 36/66 (54%), Gaps = 6/66 (9%)
Query: 232 FIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGWLYKEAREL 291
+D+ +L G D+ + I GIGPK A++++KEH + +LE + T+P RE
Sbjct: 215 LVDIAMLCGTDFNEGITGIGPKTAVKVVKEHGDLWSVLE---ARGDTIPNA---DRVREF 268
Query: 292 FRHPEI 297
F P +
Sbjct: 269 FLDPPV 274
>gi|170111452|ref|XP_001886930.1| predicted protein [Laccaria bicolor S238N-H82]
gi|164638288|gb|EDR02567.1| predicted protein [Laccaria bicolor S238N-H82]
Length = 119
Score = 82.8 bits (203), Expect = 4e-13, Method: Composition-based stats.
Identities = 39/89 (43%), Positives = 63/89 (70%), Gaps = 2/89 (2%)
Query: 73 VKAGKVYATATEDMDALTFG--SNILLRHMTFSEARKLPVQEFHLEKVLEGMELSHEEFI 130
+ A ++YAT ++DMDALTF + IL R++TFSEA+K P+ E +L++ E + ++ +
Sbjct: 28 LHAIQMYATDSDDMDALTFNAPTGILFRYLTFSEAKKQPISEINLKEAFEVLVMNMSQLF 87
Query: 131 DLCILLGCDYCDSIRGIGPKRAIELIKEH 159
D CI LG DY + I+ +GPK A++LI+E+
Sbjct: 88 DQCIPLGRDYLEPIKDVGPKFALKLIREY 116
>gi|448568151|ref|ZP_21637728.1| flap endonuclease-1 [Haloferax lucentense DSM 14919]
gi|445727101|gb|ELZ78715.1| flap endonuclease-1 [Haloferax lucentense DSM 14919]
Length = 326
Score = 82.8 bits (203), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 45/135 (33%), Positives = 70/135 (51%), Gaps = 10/135 (7%)
Query: 60 KAPCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVL 119
+AP E EAQ + M + G +ED D L FG+ LR +T +L L+ L
Sbjct: 150 EAPAEGEAQASYMARTGDADYVGSEDYDTLLFGAPYTLRQLTSKGNPEL----MDLDATL 205
Query: 120 EGMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEG 179
+ +++HE+ +D+ +L G D+ + I GIGPK A++L+ EH + +LE + T+P
Sbjct: 206 DKHDITHEQLVDIAMLCGTDFNEGITGIGPKTAVKLVTEHGDLWSVLE---ARGDTIPNA 262
Query: 180 WLYKEARELFRHPEV 194
RE F P V
Sbjct: 263 ---DRVREFFLDPPV 274
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 35/114 (30%), Positives = 60/114 (52%), Gaps = 3/114 (2%)
Query: 298 ADPETIELVADVAPSSIRESRKICIDASMSLYQFLIAV--RSEGNQLMSVDGEPTSHLMG 355
AD T+ +++V+ + S + +DA LY++L + + +GE ++L+G
Sbjct: 4 ADLRTLAALSEVSFDEVSGS-VVAVDAHNWLYRYLTTTVKWTSSETYTTSEGEEVANLVG 62
Query: 356 TFYRTIRLVEHGLKPIYVFDGKPPTLKSGELNKRMEKREDAQKALAKAQEQGKL 409
+ EH L P++VFDG +K E+ KR E+RE A++ L A+E G L
Sbjct: 63 IVQGLPKFFEHDLTPVFVFDGGVTEMKDDEVAKRREQREKAEERLEAAREAGDL 116
Score = 47.4 bits (111), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 35/66 (53%), Gaps = 6/66 (9%)
Query: 232 FIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGWLYKEAREL 291
+D+ +L G D+ + I GIGPK A++L+ EH + +LE + T+P RE
Sbjct: 215 LVDIAMLCGTDFNEGITGIGPKTAVKLVTEHGDLWSVLE---ARGDTIPNA---DRVREF 268
Query: 292 FRHPEI 297
F P +
Sbjct: 269 FLDPPV 274
>gi|325968460|ref|YP_004244652.1| flap structure-specific endonuclease [Vulcanisaeta moutnovskia
768-28]
gi|323707663|gb|ADY01150.1| flap structure-specific endonuclease [Vulcanisaeta moutnovskia
768-28]
Length = 349
Score = 82.8 bits (203), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 53/154 (34%), Positives = 84/154 (54%), Gaps = 14/154 (9%)
Query: 60 KAPCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQE------- 112
+A + EAQ A + K GK +A ++D D+L FG+ L+R++ + RKLP ++
Sbjct: 152 QAMADGEAQAAVIAKEGKAWAAGSQDYDSLLFGAPRLVRNLAITGRRKLPNKDEYVEIRP 211
Query: 113 --FHLEKVLEGMELSHE-EFIDLCILLGCDYC-DSIRGIGPKRAIELIKEHRSIEKILEN 168
L ++L ++L + IDL +LLG D D + GIGP+RA++LI+E S+EK+L+
Sbjct: 212 EIIELNEILRALKLKDRIQLIDLAVLLGTDLNPDGVPGIGPQRALKLIQEFGSLEKLLQG 271
Query: 169 IDTKKYTVPEGWLYKEARELFRHPEVADPETIEF 202
K P L + R+ F +P IEF
Sbjct: 272 -PLKNAQFPMDPL--KIRDYFLNPPYNPNYAIEF 302
Score = 77.8 bits (190), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 47/112 (41%), Positives = 65/112 (58%), Gaps = 9/112 (8%)
Query: 306 VADVAPSSIRES--------RKICIDASMSLYQFLIAVR-SEGNQLMSVDGEPTSHLMGT 356
+ + P SIR++ R I +DA +LYQFL ++R +G LM G TSHL G
Sbjct: 6 LGKLIPDSIRKAVDFMQLSNRIIAMDAYNALYQFLASIRQPDGTPLMDTKGRITSHLSGL 65
Query: 357 FYRTIRLVEHGLKPIYVFDGKPPTLKSGELNKRMEKREDAQKALAKAQEQGK 408
YRTI +E+ + P+YVFDGKPP K+ E+ +R RE+A K E+GK
Sbjct: 66 LYRTINFLENRIWPVYVFDGKPPEEKTLEIVRRRRVREEAMDKWVKLLEEGK 117
Score = 45.8 bits (107), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 21/40 (52%), Positives = 30/40 (75%), Gaps = 1/40 (2%)
Query: 232 FIDLCILLGCDYC-DSIRGIGPKRAIELIKEHRSIEKILE 270
IDL +LLG D D + GIGP+RA++LI+E S+EK+L+
Sbjct: 231 LIDLAVLLGTDLNPDGVPGIGPQRALKLIQEFGSLEKLLQ 270
Score = 40.8 bits (94), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 28/43 (65%)
Query: 9 DEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSSTTQGRLDSFF 51
DE G++++L + +F E+R+RN ++L KA + LDSFF
Sbjct: 306 DERGIIEFLVHEHDFNEERVRNAIERLRKAMGKRRESTLDSFF 348
Score = 40.8 bits (94), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 28/43 (65%)
Query: 415 DEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSTTTQGRLDSFF 457
DE G++++L + +F E+R+RN ++L KA + LDSFF
Sbjct: 306 DERGIIEFLVHEHDFNEERVRNAIERLRKAMGKRRESTLDSFF 348
>gi|397780742|ref|YP_006545215.1| flap endonuclease-1 [Methanoculleus bourgensis MS2]
gi|396939244|emb|CCJ36499.1| flap endonuclease-1 [Methanoculleus bourgensis MS2]
Length = 333
Score = 82.8 bits (203), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 49/150 (32%), Positives = 83/150 (55%), Gaps = 15/150 (10%)
Query: 60 KAPCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARK-------LPVQE 112
+AP E EAQ A MV++G V ++D D+L FGS +L+R++T S RK + +
Sbjct: 149 QAPSEGEAQAAHMVRSGGVTYAVSQDYDSLLFGSPVLVRNLTVSGRRKARGRTITVNPER 208
Query: 113 FHLEKVLEGMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTK 172
F L VL+ + ++ E+ I++ IL+G D+ IRG+G K A+++++ I E K
Sbjct: 209 FVLSSVLDRLGVTREQLIEIGILVGTDFNPGIRGVGGKTALKVVRSGEFESLIAE----K 264
Query: 173 KYTVPEGWLYKEARELFRHPEVADPETIEF 202
+ G + RE F++P + D +E+
Sbjct: 265 QPDFDPGPI----REFFQNPPITDDYALEW 290
Score = 80.9 bits (198), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 38/91 (41%), Positives = 56/91 (61%), Gaps = 1/91 (1%)
Query: 321 CIDASMSLYQFLIAVR-SEGNQLMSVDGEPTSHLMGTFYRTIRLVEHGLKPIYVFDGKPP 379
+DA +LYQFL +R +G LM+ G TSHL G +RT+ +E G+KP++VFDGKPP
Sbjct: 26 AVDAHNALYQFLSIIRQPDGTPLMNGAGRVTSHLSGILFRTVNFLEKGIKPVFVFDGKPP 85
Query: 380 TLKSGELNKRMEKREDAQKALAKAQEQGKLK 410
K + +R E R A +A A ++G ++
Sbjct: 86 EFKQETIEQRREVRNRANEAWKAALKEGDME 116
Score = 43.1 bits (100), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 21/49 (42%), Positives = 30/49 (61%), Gaps = 3/49 (6%)
Query: 3 LKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSSTTQGRLDSFF 51
L+W PD + +V+ LCG +F+EDR+RN L K TQ LD++F
Sbjct: 288 LEWRTPDVERVVEMLCGRYDFSEDRVRNA---LTKVSVKATQKTLDAWF 333
Score = 43.1 bits (100), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 21/49 (42%), Positives = 30/49 (61%), Gaps = 3/49 (6%)
Query: 409 LKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSTTTQGRLDSFF 457
L+W PD + +V+ LCG +F+EDR+RN L K TQ LD++F
Sbjct: 288 LEWRTPDVERVVEMLCGRYDFSEDRVRNA---LTKVSVKATQKTLDAWF 333
>gi|448738796|ref|ZP_21720817.1| flap endonuclease-1 [Halococcus thailandensis JCM 13552]
gi|445801182|gb|EMA51526.1| flap endonuclease-1 [Halococcus thailandensis JCM 13552]
Length = 325
Score = 82.8 bits (203), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 51/143 (35%), Positives = 74/143 (51%), Gaps = 18/143 (12%)
Query: 60 KAPCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVL 119
+AP E EAQ A M + G V +ED D L FG+ LR +T K + L+ L
Sbjct: 150 EAPAEGEAQAAHMARTGTVDYAGSEDYDTLLFGAPRTLRDLT----SKGDPECMALDATL 205
Query: 120 EGMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEG 179
+ +L+ E+ +D+ IL G D+ D + GIGPK A++L+ EH + +LE D
Sbjct: 206 DEHDLTWEQLVDVGILCGTDFNDGVSGIGPKTAVKLVGEHGDLWAVLEAEDA-------- 257
Query: 180 WLYKE----ARELFRHPEVADPE 198
Y E RELF +P+V D +
Sbjct: 258 --YIENADLVRELFVNPDVTDTD 278
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 49/90 (54%), Gaps = 2/90 (2%)
Query: 320 ICIDASMSLYQFLIA-VRSEGNQL-MSVDGEPTSHLMGTFYRTIRLVEHGLKPIYVFDGK 377
+ IDA LY++L V+ + + + GE ++L+G + EH + P+ VFDG
Sbjct: 25 VAIDAHNWLYRYLTTTVKWTSDAIYTTAAGEEVANLVGVVQGLPKFFEHDITPVMVFDGG 84
Query: 378 PPTLKSGELNKRMEKREDAQKALAKAQEQG 407
LK+ E+ +R E++E A K +A+E G
Sbjct: 85 VTDLKTDEIEQRREQKEKAAKRAKEAREAG 114
Score = 50.1 bits (118), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 39/74 (52%), Gaps = 14/74 (18%)
Query: 232 FIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGWLYKE---- 287
+D+ IL G D+ D + GIGPK A++L+ EH + +LE D Y E
Sbjct: 215 LVDVGILCGTDFNDGVSGIGPKTAVKLVGEHGDLWAVLEAEDA----------YIENADL 264
Query: 288 ARELFRHPEIADPE 301
RELF +P++ D +
Sbjct: 265 VRELFVNPDVTDTD 278
>gi|448534324|ref|ZP_21621652.1| flap endonuclease-1 [Halorubrum hochstenium ATCC 700873]
gi|445704806|gb|ELZ56713.1| flap endonuclease-1 [Halorubrum hochstenium ATCC 700873]
Length = 325
Score = 82.4 bits (202), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 46/137 (33%), Positives = 67/137 (48%), Gaps = 10/137 (7%)
Query: 60 KAPCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVL 119
+AP E EAQCA M G V +ED D L FG+ LR +T +L L L
Sbjct: 150 EAPAEGEAQCAHMAATGTVDHAGSEDYDTLLFGAPTTLRQLTSKGDPEL----MDLAATL 205
Query: 120 EGMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEG 179
++L + +D +L G D+ + +RGIGPK A+ ++EH + +L D + +P
Sbjct: 206 SDLDLDRQGLVDAAMLCGTDFNEGVRGIGPKTAVTAVREHGDLWGVL---DARDAEIPNA 262
Query: 180 WLYKEARELFRHPEVAD 196
+ RELF P D
Sbjct: 263 ---EAIRELFMDPPATD 276
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 47/93 (50%), Gaps = 10/93 (10%)
Query: 231 SFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGWLYKEARE 290
+D +L G D+ + +RGIGPK A+ ++EH + +L D + +P + RE
Sbjct: 214 GLVDAAMLCGTDFNEGVRGIGPKTAVTAVREHGDLWGVL---DARDAEIPNA---EAIRE 267
Query: 291 LFRHPEIADPETIELVADVAPSSIRESRKICID 323
LF P D + + ADV P + +R+ +D
Sbjct: 268 LFMDPPATD---VAVDADVNP-DVEAAREYVVD 296
Score = 39.3 bits (90), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 35/73 (47%), Gaps = 2/73 (2%)
Query: 316 ESRKICIDASMSLYQFLIAVR--SEGNQLMSVDGEPTSHLMGTFYRTIRLVEHGLKPIYV 373
E + +DA LY++L + + + DG ++L+G + EH L P+ V
Sbjct: 21 EGSVVAVDAHNWLYRYLTTTVKWTSDEKYTTADGVEVANLIGVVQGLPKFFEHDLIPVMV 80
Query: 374 FDGKPPTLKSGEL 386
FDG LK+ E+
Sbjct: 81 FDGAVTDLKADEV 93
>gi|116326798|ref|YP_803335.1| hypothetical protein TNAV2c_gp112 [Trichoplusia ni ascovirus 2c]
gi|102231806|gb|ABF70629.1| hypothetical protein [Trichoplusia ni ascovirus 2c]
Length = 410
Score = 82.0 bits (201), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 50/144 (34%), Positives = 79/144 (54%), Gaps = 15/144 (10%)
Query: 33 KKLLKARS--STTQGRLDSFFTIRREEKRK-------APCEAEAQCAAMVKAGKVYATAT 83
KK+L AR ++ ++D F E R+ +P EAE C AM+ AG +
Sbjct: 209 KKILNARQLRASVSKQID--FNYVTEALRRNGACVVSSPTEAETMCGAMISAGLADVAYS 266
Query: 84 EDMDALTFGSNILLRHMTFSEA-RKLPVQEFHLEKVLEGMELSHEEFIDLCILLGCDYCD 142
D D L + ++H+ FS + + +++K++ M L+ E+FID CIL G DY
Sbjct: 267 RDYDMLAYRG---VKHVIFSMSIYRRTYSSINIDKLMHLMGLNSEQFIDFCILCGTDYNK 323
Query: 143 SIRGIGPKRAIELIKEHRSIEKIL 166
SI G+GPK ++LIK++ +IE+IL
Sbjct: 324 SIPGMGPKVVLKLIKKYNNIERIL 347
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/38 (57%), Positives = 29/38 (76%)
Query: 232 FIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKIL 269
FID CIL G DY SI G+GPK ++LIK++ +IE+IL
Sbjct: 310 FIDFCILCGTDYNKSIPGMGPKVVLKLIKKYNNIERIL 347
Score = 39.7 bits (91), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 16/29 (55%), Positives = 21/29 (72%)
Query: 201 EFIDLCILLGCDYCDSIRGIGPKRAIELL 229
+FID CIL G DY SI G+GPK ++L+
Sbjct: 309 QFIDFCILCGTDYNKSIPGMGPKVVLKLI 337
>gi|13541391|ref|NP_111079.1| flap endonuclease-1 [Thermoplasma volcanium GSS1]
gi|28380020|sp|Q97B98.1|FEN_THEVO RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|14324774|dbj|BAB59701.1| FLAP endonuclease-1 [Thermoplasma volcanium GSS1]
Length = 335
Score = 82.0 bits (201), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 52/123 (42%), Positives = 67/123 (54%), Gaps = 10/123 (8%)
Query: 321 CIDASMSLYQFLIAVRS-EGNQLMSVDGEPTSHLMGTFYRTIRLVEHGLKPIYVFDGKPP 379
ID LYQ L VR +G LM G TSHL G FYRT+ LVE+G+KPI+VFDGKP
Sbjct: 25 AIDTYNILYQLLSNVRQYDGTPLMDSSGNVTSHLYGIFYRTVNLVENGIKPIFVFDGKPS 84
Query: 380 TLKSGELNKRMEKREDAQKALAKAQEQGKLKWSDPDEDGLVKYLCGDKNFAEDRIRNGAK 439
LK+ L R +E A+ L +A +G E+ L +Y N+ +I N K
Sbjct: 85 PLKNRTLEIRQLAKEKAKAELEEAISRG--------EENLKQYYS-RINYITPQIVNDTK 135
Query: 440 KLL 442
+LL
Sbjct: 136 ELL 138
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 42/145 (28%), Positives = 75/145 (51%), Gaps = 16/145 (11%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFH------ 114
AP E EAQ + M + ++D D L FG+ +LR+ RK+P + +
Sbjct: 148 APSEGEAQASYMTRK-DADGVISQDYDCLLFGAKKILRNFAIYGRRKVPRKNVYRTVYPE 206
Query: 115 ---LEKVLEGMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDT 171
L++VL+ ++ ++ I++ IL+G D+ + I+GIG K+A+ LIK+ +I+ +L I
Sbjct: 207 YVMLDEVLKKNGINQDQLIEIGILVGTDFNEGIKGIGAKKALALIKKEGNIKAVLNKIGK 266
Query: 172 KKYTVPEGWLYKEARELFRHPEVAD 196
+ E + F++P V D
Sbjct: 267 NIENL------DEIIDFFKNPPVVD 285
Score = 43.1 bits (100), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 38/68 (55%), Gaps = 6/68 (8%)
Query: 232 FIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGWLYKEAREL 291
I++ IL+G D+ + I+GIG K+A+ LIK+ +I+ +L I + E +
Sbjct: 224 LIEIGILVGTDFNEGIKGIGAKKALALIKKEGNIKAVLNKIGKNIENL------DEIIDF 277
Query: 292 FRHPEIAD 299
F++P + D
Sbjct: 278 FKNPPVVD 285
>gi|333986804|ref|YP_004519411.1| Flap structure-specific endonuclease [Methanobacterium sp. SWAN-1]
gi|333824948|gb|AEG17610.1| Flap structure-specific endonuclease [Methanobacterium sp. SWAN-1]
Length = 328
Score = 82.0 bits (201), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 38/110 (34%), Positives = 71/110 (64%), Gaps = 1/110 (0%)
Query: 60 KAPCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVL 119
+A E EAQ + MV+ G + ++D D + FG+ +++++T + K ++ L+KVL
Sbjct: 148 QAMGEGEAQASYMVEKGDAWCVGSQDYDCVLFGATRMVKNLTIT-GGKANLELIELKKVL 206
Query: 120 EGMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENI 169
E +E++ E+ ID+ IL G D+ + ++GIG K+ ++L+KEH I IL+++
Sbjct: 207 ERLEITREQLIDVAILAGTDFNEGVKGIGAKKGLKLVKEHGDIFNILDHM 256
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 46/124 (37%), Positives = 66/124 (53%), Gaps = 9/124 (7%)
Query: 320 ICIDASMSLYQFLIAVRS-EGNQLMSVDGEPTSHLMGTFYRTIRLVEHGLKPIYVFDGKP 378
+ +DA+ +YQFL ++R +G LM + TSH G YRT L+E G+KP+YVFDG
Sbjct: 24 VALDAANVIYQFLSSIRQVDGTPLMDHNKNITSHFSGILYRTSSLIEKGIKPVYVFDGIS 83
Query: 379 PTLKSGELNKRMEKREDAQKALAKAQEQGKLKWSDPDEDGLVKYLCGDKNFAEDRIRNGA 438
LK G KR E +E ++K A ++G + + KY + D I G+
Sbjct: 84 SYLKKGTQAKRREVKEKSEKRWKAALDEGNTEEAR-------KYAVRSSRMSSDVIE-GS 135
Query: 439 KKLL 442
KKLL
Sbjct: 136 KKLL 139
Score = 47.4 bits (111), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 21/49 (42%), Positives = 31/49 (63%), Gaps = 2/49 (4%)
Query: 3 LKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSSTTQGRLDSFF 51
LKW PD+ G++ YLCGD +F+EDR+ + +KL K Q L+ +F
Sbjct: 282 LKWRSPDKSGVIDYLCGDHDFSEDRVSSALEKLKKL--DMNQSSLEKWF 328
Score = 47.4 bits (111), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 21/49 (42%), Positives = 31/49 (63%), Gaps = 2/49 (4%)
Query: 409 LKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSTTTQGRLDSFF 457
LKW PD+ G++ YLCGD +F+EDR+ + +KL K Q L+ +F
Sbjct: 282 LKWRSPDKSGVIDYLCGDHDFSEDRVSSALEKLKKL--DMNQSSLEKWF 328
Score = 44.7 bits (104), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 29/41 (70%)
Query: 232 FIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENI 272
ID+ IL G D+ + ++GIG K+ ++L+KEH I IL+++
Sbjct: 216 LIDVAILAGTDFNEGVKGIGAKKGLKLVKEHGDIFNILDHM 256
>gi|288559640|ref|YP_003423126.1| flap endonuclease Fen [Methanobrevibacter ruminantium M1]
gi|288542350|gb|ADC46234.1| flap endonuclease Fen [Methanobrevibacter ruminantium M1]
Length = 328
Score = 82.0 bits (201), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 40/96 (41%), Positives = 58/96 (60%), Gaps = 1/96 (1%)
Query: 316 ESRKICIDASMSLYQFLIAVRS-EGNQLMSVDGEPTSHLMGTFYRTIRLVEHGLKPIYVF 374
E R + IDA +LYQFL +R +G+ LM +G TSHL G YRT +V+ G+KP+YVF
Sbjct: 20 EGRTVAIDAYNTLYQFLSGIRQRDGSPLMDANGNVTSHLSGILYRTASIVDKGIKPVYVF 79
Query: 375 DGKPPTLKSGELNKRMEKREDAQKALAKAQEQGKLK 410
DG K+ + KR RE+A + +A+ G ++
Sbjct: 80 DGDVSEYKTKTVEKRRALREEANQKYEEAKAAGNIE 115
Score = 79.7 bits (195), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 50/144 (34%), Positives = 82/144 (56%), Gaps = 8/144 (5%)
Query: 60 KAPCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVL 119
+A E EAQ A MVK G +A A++D D L FG+ ++R++T S ++ L+KVL
Sbjct: 148 QAKGEGEAQGAYMVKNGDAWAVASQDYDCLLFGAPRIIRNLTLSGGLS-NLEYLELDKVL 206
Query: 120 EGMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTV-PE 178
++LS E+ +D+ +++G D+ + I GIG K ++LI+++ S+E IL V P+
Sbjct: 207 TEIDLSREQLVDVALMVGTDFNEGIYGIGAKTGLKLIRQN-SLEDILVQKGITDVEVEPD 265
Query: 179 GWLYKEARELFRHPEVADPETIEF 202
E RE+F +V I+F
Sbjct: 266 -----ELREIFLSHDVNTDYKIKF 284
>gi|448667547|ref|ZP_21686047.1| flap endonuclease-1 [Haloarcula amylolytica JCM 13557]
gi|445770115|gb|EMA21183.1| flap endonuclease-1 [Haloarcula amylolytica JCM 13557]
Length = 326
Score = 82.0 bits (201), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 51/145 (35%), Positives = 70/145 (48%), Gaps = 14/145 (9%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVLE 120
AP E E Q + M + G V TED DAL FG+ + LR +T +L E LE
Sbjct: 151 APAEGEGQASVMARRGDVDYVGTEDYDALLFGAPMTLRQITSKGDPEL----MDFEATLE 206
Query: 121 GMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGW 180
+L+ E+ +D IL+G D+ + I GIGPK A+ + EH + +LE D
Sbjct: 207 QHDLTWEQLVDAAILMGTDFNEGISGIGPKTAVTELHEHGDLYAVLEARDEHIDHA---- 262
Query: 181 LYKEARELFRHPEVAD----PETIE 201
R LF P V D P++IE
Sbjct: 263 --DRIRNLFLDPAVTDDYEIPDSIE 285
Score = 54.3 bits (129), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 35/113 (30%), Positives = 61/113 (53%), Gaps = 5/113 (4%)
Query: 298 ADPETIELVADVAPSSIRESRKICIDASMSLYQFL---IAVRSEGNQLMSVDGEPTSHLM 354
AD ++ ++DV+ + S + +DA LY++L + SE ++ + DGE ++L+
Sbjct: 4 ADLRSLAALSDVSFGDLGGS-VVAVDAHNWLYRYLTTTVKFTSE-SKYTTGDGEEVANLI 61
Query: 355 GTFYRTIRLVEHGLKPIYVFDGKPPTLKSGELNKRMEKREDAQKALAKAQEQG 407
G + EH L P++VFDG LK E+ KR E+R+ + L A++ G
Sbjct: 62 GVIQGLPKFFEHDLTPVFVFDGAVTDLKDDEVEKRREQRQKYESELEAARKAG 114
Score = 46.2 bits (108), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 43/93 (46%), Gaps = 10/93 (10%)
Query: 232 FIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGWLYKEAREL 291
+D IL+G D+ + I GIGPK A+ + EH + +LE D R L
Sbjct: 215 LVDAAILMGTDFNEGISGIGPKTAVTELHEHGDLYAVLEARDEHIDHA------DRIRNL 268
Query: 292 FRHPEIAD----PETIELVADVAPSSIRESRKI 320
F P + D P++IE D A + + E ++
Sbjct: 269 FLDPAVTDDYEIPDSIEPDVDAARAFVTEQWEV 301
Score = 45.1 bits (105), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 30/108 (27%), Positives = 48/108 (44%), Gaps = 21/108 (19%)
Query: 195 ADPETIEF--------------IDLCILLGCDYCDSIRGIGPKRAIELLYSFIDLCILLG 240
DPE ++F +D IL+G D+ + I GIGPK A+ L+ DL +L
Sbjct: 194 GDPELMDFEATLEQHDLTWEQLVDAAILMGTDFNEGISGIGPKTAVTELHEHGDLYAVLE 253
Query: 241 C-----DYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGW 283
D+ D IR + A+ ++ + I ++D + V E W
Sbjct: 254 ARDEHIDHADRIRNLFLDPAV--TDDYEIPDSIEPDVDAARAFVTEQW 299
>gi|342320365|gb|EGU12306.1| Hypothetical Protein RTG_01685 [Rhodotorula glutinis ATCC 204091]
Length = 751
Score = 82.0 bits (201), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 43/113 (38%), Positives = 70/113 (61%), Gaps = 1/113 (0%)
Query: 62 PCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVLEG 121
P EAE C+A+ +AG V A+ED D + FG+ LLR+ T +E K P+ ++ +
Sbjct: 417 PFEAEGVCSALYQAGLVDCVASEDTDVVVFGAP-LLRYATTTENPKNPMNVLDPVELRKQ 475
Query: 122 MELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKY 174
++L+ E+ +DL +LLG D+ I G+GP AI L++ + SIE I++ + K+Y
Sbjct: 476 LDLTKEQLVDLALLLGTDFTVRIPGLGPVAAITLMRRYGSIEAIVDVLAKKEY 528
Score = 45.1 bits (105), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 30/46 (65%)
Query: 232 FIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKY 277
+DL +LLG D+ I G+GP AI L++ + SIE I++ + K+Y
Sbjct: 483 LVDLALLLGTDFTVRIPGLGPVAAITLMRRYGSIEAIVDVLAKKEY 528
>gi|448499403|ref|ZP_21611330.1| flap endonuclease-1 [Halorubrum coriense DSM 10284]
gi|445697358|gb|ELZ49423.1| flap endonuclease-1 [Halorubrum coriense DSM 10284]
Length = 325
Score = 81.6 bits (200), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 45/133 (33%), Positives = 67/133 (50%), Gaps = 10/133 (7%)
Query: 60 KAPCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVL 119
+AP E EAQCA M AG V +ED D L FG+ LR +T +L L L
Sbjct: 150 EAPAEGEAQCAQMAAAGTVDHAGSEDYDTLLFGAPTTLRQLTSKGDPEL----MDLAATL 205
Query: 120 EGMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEG 179
+ L + +D+ +L G D+ + +RG+GPK A++ + EH + +L D + +P
Sbjct: 206 SDLGLDRQGLVDVAMLCGTDFNEGVRGVGPKTAVKAVTEHGDLWGVL---DARDAEIPNA 262
Query: 180 WLYKEARELFRHP 192
+ RELF P
Sbjct: 263 ---EAIRELFMDP 272
Score = 49.7 bits (117), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 49/94 (52%), Gaps = 12/94 (12%)
Query: 231 SFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGWLYKEARE 290
+D+ +L G D+ + +RG+GPK A++ + EH + +L D + +P + RE
Sbjct: 214 GLVDVAMLCGTDFNEGVRGVGPKTAVKAVTEHGDLWGVL---DARDAEIPNA---EAIRE 267
Query: 291 LFRHPEIADPET-IELVADVAPSSIRESRKICID 323
LF P P T + + ADV P + +R+ +D
Sbjct: 268 LFMDP----PATEVAVDADVNP-DVAAAREYVVD 296
Score = 38.5 bits (88), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 44/91 (48%), Gaps = 3/91 (3%)
Query: 298 ADPETIELVADVAPSSIRESRKICIDASMSLYQFLIAVR--SEGNQLMSVDGEPTSHLMG 355
AD + + DV+ + I E + +DA LY++L + + + DG ++L+G
Sbjct: 4 ADLRDLASIRDVSFAEI-EGGVVAVDAHNWLYRYLTTTVKWTSEEKYTTADGVEVANLIG 62
Query: 356 TFYRTIRLVEHGLKPIYVFDGKPPTLKSGEL 386
+ EH L P+ VFDG LK+ E+
Sbjct: 63 VVQGLPKFFEHDLIPVMVFDGAVTDLKADEV 93
>gi|126179869|ref|YP_001047834.1| flap endonuclease-1 [Methanoculleus marisnigri JR1]
gi|166973702|sp|A3CWV2.1|FEN_METMJ RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|125862663|gb|ABN57852.1| flap endonuclease 1 [Methanoculleus marisnigri JR1]
Length = 333
Score = 81.6 bits (200), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 38/91 (41%), Positives = 56/91 (61%), Gaps = 1/91 (1%)
Query: 321 CIDASMSLYQFLIAVR-SEGNQLMSVDGEPTSHLMGTFYRTIRLVEHGLKPIYVFDGKPP 379
+DA +LYQFL +R +G LM+ G TSHL G +RT+ +E G++P++VFDGKPP
Sbjct: 26 ALDAHNALYQFLSIIRQPDGTPLMNGAGRITSHLSGILFRTVNFLEKGIRPVFVFDGKPP 85
Query: 380 TLKSGELNKRMEKREDAQKALAKAQEQGKLK 410
K +N+R E R A +A A +G ++
Sbjct: 86 EFKQETINERREHRARADEAWKTALREGDME 116
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 45/150 (30%), Positives = 78/150 (52%), Gaps = 15/150 (10%)
Query: 60 KAPCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARK-------LPVQE 112
+AP E EAQ A M + GKV ++D D+L FGS +L+R++T S RK + +
Sbjct: 149 QAPSEGEAQAAYMARQGKVTYAVSQDYDSLLFGSPVLVRNLTVSGRRKTRGRTITVNPER 208
Query: 113 FHLEKVLEGMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTK 172
L L+ + ++ E+ + + IL+G D+ IRG+G K A+++++ + E ++
Sbjct: 209 IVLSSFLDRLGVTREQLVKIGILVGTDFNPGIRGVGGKTALKIVR-NGEFESVIAEKQPD 267
Query: 173 KYTVPEGWLYKEARELFRHPEVADPETIEF 202
P R+ F +P V D T+E+
Sbjct: 268 FNPAP-------IRDFFLNPPVTDDYTLEW 290
Score = 44.3 bits (103), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 32/50 (64%), Gaps = 3/50 (6%)
Query: 2 TLKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSSTTQGRLDSFF 51
TL+W PD +G+V+ LCG +F+E+R+R+ L K TQ LD++F
Sbjct: 287 TLEWRTPDVEGVVEMLCGRYDFSEERVRSA---LAKVSVKATQKTLDAWF 333
Score = 42.4 bits (98), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 31/49 (63%), Gaps = 3/49 (6%)
Query: 409 LKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSTTTQGRLDSFF 457
L+W PD +G+V+ LCG +F+E+R+R+ L K TQ LD++F
Sbjct: 288 LEWRTPDVEGVVEMLCGRYDFSEERVRSA---LAKVSVKATQKTLDAWF 333
>gi|448689147|ref|ZP_21694884.1| flap endonuclease-1 [Haloarcula japonica DSM 6131]
gi|445779017|gb|EMA29959.1| flap endonuclease-1 [Haloarcula japonica DSM 6131]
Length = 326
Score = 81.6 bits (200), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 52/149 (34%), Positives = 73/149 (48%), Gaps = 22/149 (14%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVLE 120
AP E E Q + M + G V TED DAL FG+ + LR +T +L E LE
Sbjct: 151 APAEGEGQASVMARRGDVDYVGTEDYDALLFGAPMTLRQITSKGDPEL----MDFEATLE 206
Query: 121 GMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKIL----ENIDTKKYTV 176
+L+ E+ +D IL+G D+ + I GIGPK A++ + EH + +L E+ID
Sbjct: 207 RHDLTWEQLVDAAILMGTDFNEGISGIGPKTAVKELHEHGDLYTVLEARNEHIDHA---- 262
Query: 177 PEGWLYKEARELFRHPEVAD----PETIE 201
R LF P V D P++IE
Sbjct: 263 ------DRIRNLFLDPAVTDDYEIPDSIE 285
Score = 56.2 bits (134), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 36/113 (31%), Positives = 62/113 (54%), Gaps = 5/113 (4%)
Query: 298 ADPETIELVADVAPSSIRESRKICIDASMSLYQFL---IAVRSEGNQLMSVDGEPTSHLM 354
AD ++ ++DV+ + S + +DA LY++L + SE ++ + DGE ++L+
Sbjct: 4 ADLRSLAALSDVSFDELGGS-VVAVDAHNWLYRYLTTTVKFTSE-SKYTTDDGEEVANLI 61
Query: 355 GTFYRTIRLVEHGLKPIYVFDGKPPTLKSGELNKRMEKREDAQKALAKAQEQG 407
G + EH + P++VFDG LK E+ KR E+RE + L +A+E G
Sbjct: 62 GVVQGLPKFFEHDMTPVFVFDGAVTDLKDDEVEKRREQREKYESELEEAREAG 114
Score = 45.1 bits (105), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 47/100 (47%), Gaps = 18/100 (18%)
Query: 232 FIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKIL----ENIDTKKYTVPEGWLYKE 287
+D IL+G D+ + I GIGPK A++ + EH + +L E+ID
Sbjct: 215 LVDAAILMGTDFNEGISGIGPKTAVKELHEHGDLYTVLEARNEHIDHA----------DR 264
Query: 288 ARELFRHPEIAD----PETIELVADVAPSSIRESRKICID 323
R LF P + D P++IE D A + + + ++ D
Sbjct: 265 IRNLFLDPAVTDDYEIPDSIEPDLDAARAFVTDQWEVDAD 304
Score = 43.9 bits (102), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 29/108 (26%), Positives = 49/108 (45%), Gaps = 21/108 (19%)
Query: 195 ADPETIEF--------------IDLCILLGCDYCDSIRGIGPKRAIELLYSFIDLCILLG 240
DPE ++F +D IL+G D+ + I GIGPK A++ L+ DL +L
Sbjct: 194 GDPELMDFEATLERHDLTWEQLVDAAILMGTDFNEGISGIGPKTAVKELHEHGDLYTVLE 253
Query: 241 C-----DYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGW 283
D+ D IR + A+ ++ + I ++D + V + W
Sbjct: 254 ARNEHIDHADRIRNLFLDPAV--TDDYEIPDSIEPDLDAARAFVTDQW 299
>gi|409722869|ref|ZP_11270258.1| flap endonuclease-1 [Halococcus hamelinensis 100A6]
gi|448722908|ref|ZP_21705436.1| flap endonuclease-1 [Halococcus hamelinensis 100A6]
gi|445788575|gb|EMA39284.1| flap endonuclease-1 [Halococcus hamelinensis 100A6]
Length = 325
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 52/143 (36%), Positives = 72/143 (50%), Gaps = 18/143 (12%)
Query: 60 KAPCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVL 119
+AP E EAQ A M ++G V +ED D L FGS LR +T S + E L
Sbjct: 150 EAPAEGEAQAAHMARSGTVDYAGSEDYDTLLFGSPRTLRKLTSSGDPEC----MDFEATL 205
Query: 120 EGMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEG 179
+L+ E +D+ IL G D+ + + GIGPK A++L++EH + LE D
Sbjct: 206 ADHDLTWEGLVDVGILCGTDFNEGVSGIGPKTAVKLVREHGDLWAALEAEDA-------- 257
Query: 180 WLYKE----ARELFRHPEVADPE 198
Y E RELF +P+V D E
Sbjct: 258 --YVENADLVRELFLNPDVTDVE 278
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/97 (30%), Positives = 49/97 (50%), Gaps = 18/97 (18%)
Query: 231 SFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGWLYKE--- 287
+D+ IL G D+ + + GIGPK A++L++EH + LE D Y E
Sbjct: 214 GLVDVGILCGTDFNEGVSGIGPKTAVKLVREHGDLWAALEAEDA----------YVENAD 263
Query: 288 -ARELFRHPEIADPETIELVADVAPSSIRESRKICID 323
RELF +P++ D +E D++P + +R+ D
Sbjct: 264 LVRELFLNPDVTD---VEFDPDISP-DLAAARRYVTD 296
Score = 40.0 bits (92), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 39/82 (47%), Gaps = 4/82 (4%)
Query: 306 VADVAPSSIRE--SRKICIDASMSLYQFLIAV--RSEGNQLMSVDGEPTSHLMGTFYRTI 361
+A + P + E + IDA LY++L + + + GE ++LMG
Sbjct: 9 LAAIDPVAFSELAGATVAIDAHNWLYRYLTTTVKWTSDSVYTTAAGEEVANLMGVVQGLP 68
Query: 362 RLVEHGLKPIYVFDGKPPTLKS 383
+ EH + P++VFDG LK+
Sbjct: 69 KFFEHDITPVFVFDGGVTDLKT 90
>gi|448678733|ref|ZP_21689740.1| flap endonuclease-1 [Haloarcula argentinensis DSM 12282]
gi|445772720|gb|EMA23765.1| flap endonuclease-1 [Haloarcula argentinensis DSM 12282]
Length = 326
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 52/149 (34%), Positives = 73/149 (48%), Gaps = 22/149 (14%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVLE 120
AP E E Q + M + G V TED DAL FG+ + LR +T +L LE
Sbjct: 151 APAEGEGQASVMARRGDVDYVGTEDYDALLFGAPMTLRQITSKGDPEL----MDFAATLE 206
Query: 121 GMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKIL----ENIDTKKYTV 176
+LS E+ +D IL+G D+ + I GIGPK A++ + EH + +L E+ID
Sbjct: 207 RHDLSWEQLVDAAILMGTDFNEGISGIGPKTAVKDLHEHGDLYAVLEARGEHIDHA---- 262
Query: 177 PEGWLYKEARELFRHPEVAD----PETIE 201
R+LF P V D P++IE
Sbjct: 263 ------DRIRDLFLDPAVTDDYEIPDSIE 285
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 38/113 (33%), Positives = 59/113 (52%), Gaps = 5/113 (4%)
Query: 298 ADPETIELVADVAPSSIRESRKICIDASMSLYQFL---IAVRSEGNQLMSVDGEPTSHLM 354
AD ++ ++DV+ + S + +DA LY++L + SE S DGE ++L+
Sbjct: 4 ADLRSLAALSDVSFDDLGGS-VVAVDAHNWLYRYLTTTVKFTSESKYTTS-DGEEVANLI 61
Query: 355 GTFYRTIRLVEHGLKPIYVFDGKPPTLKSGELNKRMEKREDAQKALAKAQEQG 407
G + EH L P++VFDG LK E+ KR E+RE + L A+E G
Sbjct: 62 GVVQGLPKFFEHDLTPVFVFDGAVTDLKDDEVEKRREQREKYESELEAAREAG 114
Score = 47.0 bits (110), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 30/100 (30%), Positives = 48/100 (48%), Gaps = 18/100 (18%)
Query: 232 FIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKIL----ENIDTKKYTVPEGWLYKE 287
+D IL+G D+ + I GIGPK A++ + EH + +L E+ID
Sbjct: 215 LVDAAILMGTDFNEGISGIGPKTAVKDLHEHGDLYAVLEARGEHIDHA----------DR 264
Query: 288 ARELFRHPEIAD----PETIELVADVAPSSIRESRKICID 323
R+LF P + D P++IE D A + + E ++ D
Sbjct: 265 IRDLFLDPAVTDDYEIPDSIEPDIDAARAFVTEQWEVDAD 304
Score = 45.1 bits (105), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 31/108 (28%), Positives = 49/108 (45%), Gaps = 21/108 (19%)
Query: 195 ADPETIEF--------------IDLCILLGCDYCDSIRGIGPKRAIELLYSFIDLCILLG 240
DPE ++F +D IL+G D+ + I GIGPK A++ L+ DL +L
Sbjct: 194 GDPELMDFAATLERHDLSWEQLVDAAILMGTDFNEGISGIGPKTAVKDLHEHGDLYAVLE 253
Query: 241 C-----DYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGW 283
D+ D IR + A+ ++ + I +ID + V E W
Sbjct: 254 ARGEHIDHADRIRDLFLDPAV--TDDYEIPDSIEPDIDAARAFVTEQW 299
>gi|448726443|ref|ZP_21708848.1| flap endonuclease-1 [Halococcus morrhuae DSM 1307]
gi|445795097|gb|EMA45633.1| flap endonuclease-1 [Halococcus morrhuae DSM 1307]
Length = 325
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 51/141 (36%), Positives = 72/141 (51%), Gaps = 18/141 (12%)
Query: 60 KAPCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVL 119
+AP E EAQ A M + G V +ED D L FG+ LR +T K + L+ L
Sbjct: 150 EAPAEGEAQAAHMARTGTVDYAGSEDYDTLLFGAPHTLRDLT----SKGDPECMALDATL 205
Query: 120 EGMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEG 179
+ +L+ E+ +D+ IL G D+ D + GIGPK A++L+ EH + LE D
Sbjct: 206 DEHDLTWEQLVDVGILCGTDFNDGVSGIGPKTAVKLVGEHGDLWAALEAEDA-------- 257
Query: 180 WLYKE----ARELFRHPEVAD 196
Y E RELF +P+V D
Sbjct: 258 --YIENADLVRELFLNPDVTD 276
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 49/90 (54%), Gaps = 2/90 (2%)
Query: 320 ICIDASMSLYQFLIA-VRSEGNQL-MSVDGEPTSHLMGTFYRTIRLVEHGLKPIYVFDGK 377
+ IDA LY++L V+ + + + GE ++L+G + EH + P+ VFDG
Sbjct: 25 VAIDAHNWLYRYLTTTVKWTSDAVYTTAAGEEVANLVGIVQGLPKFFEHDITPVMVFDGG 84
Query: 378 PPTLKSGELNKRMEKREDAQKALAKAQEQG 407
LK+ E+ +R E++E A K +A+E G
Sbjct: 85 VTELKADEIEQRREQKEKAAKRAKEAREAG 114
Score = 48.5 bits (114), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 37/72 (51%), Gaps = 14/72 (19%)
Query: 232 FIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGWLYKE---- 287
+D+ IL G D+ D + GIGPK A++L+ EH + LE D Y E
Sbjct: 215 LVDVGILCGTDFNDGVSGIGPKTAVKLVGEHGDLWAALEAEDA----------YIENADL 264
Query: 288 ARELFRHPEIAD 299
RELF +P++ D
Sbjct: 265 VRELFLNPDVTD 276
>gi|410669636|ref|YP_006922007.1| flap endonuclease-1 [Methanolobus psychrophilus R15]
gi|409168764|gb|AFV22639.1| flap endonuclease-1 [Methanolobus psychrophilus R15]
Length = 341
Score = 80.9 bits (198), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 41/92 (44%), Positives = 57/92 (61%), Gaps = 1/92 (1%)
Query: 320 ICIDASMSLYQFLIAVR-SEGNQLMSVDGEPTSHLMGTFYRTIRLVEHGLKPIYVFDGKP 378
I IDA ++YQFL A+R +G+ L G PTSHL G F RT +L + +KP+++FDGKP
Sbjct: 24 IAIDAYNTIYQFLSAIRQKDGSLLTDSSGNPTSHLTGLFSRTSKLRDANIKPVFIFDGKP 83
Query: 379 PTLKSGELNKRMEKREDAQKALAKAQEQGKLK 410
P +K L KR +E A A+E+G L+
Sbjct: 84 PEMKKETLEKRRGIKETATLNYEIAREEGNLE 115
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 41/142 (28%), Positives = 72/142 (50%), Gaps = 16/142 (11%)
Query: 72 MVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKV---------LEGM 122
M G ++D DA FG+ ++R++ + RK+P + ++ K LE +
Sbjct: 160 MTSRGDADLVGSQDYDAFLFGAESVVRNLGSTGKRKIPGRNAYVAKTPEHISLSGSLEQL 219
Query: 123 ELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKIL--ENIDTKKYTVPEGW 180
E++ E+ ID+ I +G D+ + I +G K A++LI +HR I ++ EN D + E
Sbjct: 220 EITREQLIDVAICIGTDFNEGIHHVGAKTALKLILKHRDIITMIKEENKDIRTCASVE-- 277
Query: 181 LYKEARELFRHPEVADPETIEF 202
E RE F +P V T+++
Sbjct: 278 ---EIREFFLNPPVTRDYTLKW 296
Score = 38.5 bits (88), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 36/69 (52%), Gaps = 7/69 (10%)
Query: 232 FIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKIL--ENIDTKKYTVPEGWLYKEAR 289
ID+ I +G D+ + I +G K A++LI +HR I ++ EN D + E E R
Sbjct: 226 LIDVAICIGTDFNEGIHHVGAKTALKLILKHRDIITMIKEENKDIRTCASVE-----EIR 280
Query: 290 ELFRHPEIA 298
E F +P +
Sbjct: 281 EFFLNPPVT 289
>gi|448454659|ref|ZP_21594212.1| flap endonuclease-1 [Halorubrum lipolyticum DSM 21995]
gi|445814746|gb|EMA64705.1| flap endonuclease-1 [Halorubrum lipolyticum DSM 21995]
Length = 325
Score = 80.9 bits (198), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 45/137 (32%), Positives = 67/137 (48%), Gaps = 10/137 (7%)
Query: 60 KAPCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVL 119
+AP E EAQCA M G V +ED D L FG+ LR +T +L L L
Sbjct: 150 EAPAEGEAQCAHMAATGSVDHAGSEDYDTLLFGAPTTLRQLTSKGDPEL----MDLAATL 205
Query: 120 EGMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEG 179
+ + + +D +L G D+ + +RGIGPK A++ ++EH + +L D + +P
Sbjct: 206 DDLGFDRQGLVDAAMLCGTDFNEGVRGIGPKTAVKAVREHGDLWGVL---DARGVEIPNA 262
Query: 180 WLYKEARELFRHPEVAD 196
+ RELF P D
Sbjct: 263 ---EAIRELFMDPPATD 276
Score = 47.4 bits (111), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 36/69 (52%), Gaps = 6/69 (8%)
Query: 231 SFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGWLYKEARE 290
+D +L G D+ + +RGIGPK A++ ++EH + +L D + +P + RE
Sbjct: 214 GLVDAAMLCGTDFNEGVRGIGPKTAVKAVREHGDLWGVL---DARGVEIPNA---EAIRE 267
Query: 291 LFRHPEIAD 299
LF P D
Sbjct: 268 LFMDPPATD 276
Score = 40.4 bits (93), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 42/91 (46%), Gaps = 3/91 (3%)
Query: 298 ADPETIELVADVAPSSIRESRKICIDASMSLYQFLIAVR--SEGNQLMSVDGEPTSHLMG 355
AD + + DVA I E + +DA LY++L + + DG ++L+G
Sbjct: 4 ADLRDLAAIRDVAFDEI-EGSVVAVDAHNWLYRYLTTTVKWTSDEAYTTADGVEVANLIG 62
Query: 356 TFYRTIRLVEHGLKPIYVFDGKPPTLKSGEL 386
+ EH L P+ VFDG LK+ E+
Sbjct: 63 VVQGLPKFFEHDLIPVMVFDGAVTELKADEV 93
>gi|302789395|ref|XP_002976466.1| hypothetical protein SELMODRAFT_175620 [Selaginella moellendorffii]
gi|302824817|ref|XP_002994048.1| hypothetical protein SELMODRAFT_138122 [Selaginella moellendorffii]
gi|300138102|gb|EFJ04882.1| hypothetical protein SELMODRAFT_138122 [Selaginella moellendorffii]
gi|300156096|gb|EFJ22726.1| hypothetical protein SELMODRAFT_175620 [Selaginella moellendorffii]
Length = 401
Score = 80.9 bits (198), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 60/194 (30%), Positives = 93/194 (47%), Gaps = 13/194 (6%)
Query: 50 FFTIRRE--EKRKAPCEAEAQCAAMVKAGKVYATATEDMDALTFG-SNILLRHMTFSEAR 106
+RRE E +P EA+AQ A + G V A TED D + +G IL + +
Sbjct: 134 ILVLRRENVEYIVSPYEADAQMAFLALRGVVDAVITEDSDLVAYGCPKILFKMDKNGQGF 193
Query: 107 KLPVQEFHLEKVLEGMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKIL 166
+L + + L + +++CIL GCDY S++G+G KRA LI+ RS EK++
Sbjct: 194 ELQYADLVKNRDLNLTSFTKRMMLEMCILSGCDYLPSLQGMGVKRAHNLIRRFRSYEKVI 253
Query: 167 ENIDTKKYTVPEGW--LYKEARELFRHPEVADPETIEFIDLCILLGCDYCDSIRGIGPKR 224
++ +P+ + +++A F H V DP E + L L D + + +GP
Sbjct: 254 RHLKFSGVMIPKSYEEGFRKALLTFCHHLVYDPTQDELVHLT-ELPADCSEEVEFLGP-- 310
Query: 225 AIELLYSFIDLCIL 238
Y F LCIL
Sbjct: 311 -----YPFKSLCIL 319
Score = 55.8 bits (133), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 46/77 (59%), Gaps = 2/77 (2%)
Query: 232 FIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGW--LYKEAR 289
+++CIL GCDY S++G+G KRA LI+ RS EK++ ++ +P+ + +++A
Sbjct: 216 MLEMCILSGCDYLPSLQGMGVKRAHNLIRRFRSYEKVIRHLKFSGVMIPKSYEEGFRKAL 275
Query: 290 ELFRHPEIADPETIELV 306
F H + DP ELV
Sbjct: 276 LTFCHHLVYDPTQDELV 292
>gi|241954550|ref|XP_002419996.1| DNA-repair protein RAD2 orthologue, putative; single-stranded DNA
endonuclease, putative [Candida dubliniensis CD36]
gi|223643337|emb|CAX42212.1| DNA-repair protein RAD2 orthologue, putative [Candida dubliniensis
CD36]
Length = 992
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 45/117 (38%), Positives = 69/117 (58%), Gaps = 5/117 (4%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHL-EKVL 119
AP EAEAQCA + K G V T+D D FG + + ++M F + + + EF+L + +
Sbjct: 749 APMEAEAQCAELFKIGLVDGIVTDDSDCFLFGGDKIYKNM-FDQKQYV---EFYLQDDLF 804
Query: 120 EGMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTV 176
M L+ + I+L +LLG DY + I+GIGP +A+E++ E ++EK E D TV
Sbjct: 805 NKMALTQHKLIELALLLGSDYTEGIKGIGPVQAMEILAEFGNLEKFKEWFDKHAKTV 861
Score = 70.1 bits (170), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 40/93 (43%), Positives = 56/93 (60%), Gaps = 15/93 (16%)
Query: 318 RKICIDASMSLYQFLIAVRS-EGNQLMSVDGEPTSHLMGTFYRTIRLVEHGLKPIYVFDG 376
+K+ IDAS+ +YQFL A+R +GN L P+SH++G F R +L+ G+ PI+VFDG
Sbjct: 25 KKLAIDASIWIYQFLKAMRDKDGNSL------PSSHIIGFFRRICKLLYFGILPIFVFDG 78
Query: 377 KPPTLKSGELNKRMEKRED--------AQKALA 401
P LK +N R ++RE AQK LA
Sbjct: 79 GVPVLKKQTINNRRQRREKNSESRQETAQKLLA 111
Score = 47.4 bits (111), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 32/50 (64%)
Query: 230 YSFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTV 279
+ I+L +LLG DY + I+GIGP +A+E++ E ++EK E D TV
Sbjct: 812 HKLIELALLLGSDYTEGIKGIGPVQAMEILAEFGNLEKFKEWFDKHAKTV 861
Score = 43.5 bits (101), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 51/101 (50%), Gaps = 6/101 (5%)
Query: 202 FIDLCILLGCDYCDSIRGIGPKRAIELLYSFIDLCILLGCDYCDSIRGIGPKRAIELIKE 261
I+L +LLG DY + I+GIGP +A+E+L F +L + + + K EL K
Sbjct: 814 LIELALLLGSDYTEGIKGIGPVQAMEILAEFGNLEKFKEW-FDKHAKTVADK--TELTKL 870
Query: 262 HRSIEKILENIDTKKYTVPEGWLYKEARELFRHPEIADPET 302
+S +L+ I K +P+ + K + + PE+ +T
Sbjct: 871 QKS---LLDRIKKGKLFLPDSFPDKVVEQAYISPEVDSDKT 908
>gi|15669635|ref|NP_248448.1| flap endonuclease-1 [Methanocaldococcus jannaschii DSM 2661]
gi|17432937|sp|Q58839.1|FEN_METJA RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|157829719|pdb|1A76|A Chain A, Flap Endonuclease-1 From Methanococcus Jannaschii
gi|157829720|pdb|1A77|A Chain A, Flap Endonuclease-1 From Methanococcus Jannaschii
gi|1592090|gb|AAB99454.1| DNA repair protein RAD2 (rad2) [Methanocaldococcus jannaschii DSM
2661]
Length = 326
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 44/137 (32%), Positives = 80/137 (58%), Gaps = 14/137 (10%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVLE 120
AP E EAQ + M K G V+A ++D DAL +G+ ++R++T + +++P + L +VLE
Sbjct: 149 APSEGEAQASYMAKKGDVWAVVSQDYDALLYGAPRVVRNLTTT--KEMP-ELIELNEVLE 205
Query: 121 GMELSHEEFIDLCILLGCDYC-DSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEG 179
+ +S ++ ID+ I +G DY ++GIG KRA EL++ + + + + ++
Sbjct: 206 DLRISLDDLIDIAIFMGTDYNPGGVKGIGFKRAYELVRSGVAKDVLKKEVE--------- 256
Query: 180 WLYKEARELFRHPEVAD 196
Y E + +F+ P+V D
Sbjct: 257 -YYDEIKRIFKEPKVTD 272
Score = 73.6 bits (179), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 40/103 (38%), Positives = 60/103 (58%), Gaps = 6/103 (5%)
Query: 307 ADVAPSSI-----RESRKICIDASMSLYQFLIAVR-SEGNQLMSVDGEPTSHLMGTFYRT 360
D P +I + +K+ ID +LYQFL ++R +G+ L + GE TS G FY+T
Sbjct: 6 GDFIPKNIISFEDLKGKKVAIDGMNALYQFLTSIRLRDGSPLRNRKGEITSAYNGVFYKT 65
Query: 361 IRLVEHGLKPIYVFDGKPPTLKSGELNKRMEKREDAQKALAKA 403
I L+E+ + PI+VFDG+PP LK R E +E A+ + +A
Sbjct: 66 IHLLENDITPIWVFDGEPPKLKEKTRKVRREMKEKAELKMKEA 108
>gi|222480031|ref|YP_002566268.1| flap endonuclease-1 [Halorubrum lacusprofundi ATCC 49239]
gi|222452933|gb|ACM57198.1| XPG I domain protein [Halorubrum lacusprofundi ATCC 49239]
Length = 325
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 45/137 (32%), Positives = 67/137 (48%), Gaps = 10/137 (7%)
Query: 60 KAPCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVL 119
+AP E EAQCA M G V +ED D L FG+ LR +T +L L L
Sbjct: 150 EAPAEGEAQCAHMAATGTVDHAGSEDYDTLLFGAPTTLRQLTSKGDPEL----MDLAATL 205
Query: 120 EGMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEG 179
+ + + +D +L G D+ + +RGIGPK A++ ++EH + +L D + +P
Sbjct: 206 DDLGFDRQGLVDAAMLCGTDFNEGVRGIGPKTAVKAVREHGDLWGVL---DARGVEIPNA 262
Query: 180 WLYKEARELFRHPEVAD 196
+ RELF P D
Sbjct: 263 ---EAIRELFMDPPATD 276
Score = 53.1 bits (126), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 35/112 (31%), Positives = 59/112 (52%), Gaps = 3/112 (2%)
Query: 298 ADPETIELVADVAPSSIRESRKICIDASMSLYQFLIA-VRSEGNQL-MSVDGEPTSHLMG 355
AD + + D++ + I E + +DA LY++L V+ ++ + DG ++L+G
Sbjct: 4 ADLRDLAAIRDISFAEI-EGSVVAVDAHNWLYRYLTTTVKWTADETYTTTDGVEVANLIG 62
Query: 356 TFYRTIRLVEHGLKPIYVFDGKPPTLKSGELNKRMEKREDAQKALAKAQEQG 407
+ EH L P+ VFDG LK+ E+ R EKRE A++ A+E+G
Sbjct: 63 IVQGLPKFFEHDLIPVMVFDGAVTELKADEVADRREKREQAEERRVAAKERG 114
Score = 47.0 bits (110), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 36/69 (52%), Gaps = 6/69 (8%)
Query: 231 SFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGWLYKEARE 290
+D +L G D+ + +RGIGPK A++ ++EH + +L D + +P + RE
Sbjct: 214 GLVDAAMLCGTDFNEGVRGIGPKTAVKAVREHGDLWGVL---DARGVEIPNA---EAIRE 267
Query: 291 LFRHPEIAD 299
LF P D
Sbjct: 268 LFMDPPATD 276
>gi|448466285|ref|ZP_21599082.1| flap endonuclease-1 [Halorubrum kocurii JCM 14978]
gi|445814415|gb|EMA64379.1| flap endonuclease-1 [Halorubrum kocurii JCM 14978]
Length = 325
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 45/137 (32%), Positives = 67/137 (48%), Gaps = 10/137 (7%)
Query: 60 KAPCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVL 119
+AP E EAQCA M G V +ED D L FG+ LR +T +L L L
Sbjct: 150 EAPAEGEAQCAHMAATGSVDHAGSEDYDTLLFGAPTTLRQLTSKGDPEL----MDLAATL 205
Query: 120 EGMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEG 179
+ + + +D +L G D+ + +RGIGPK A++ ++EH + +L D + +P
Sbjct: 206 DDLGFDRQGLVDAAMLCGTDFNEGVRGIGPKTAVKAVREHGDLWGVL---DARGAEIPNA 262
Query: 180 WLYKEARELFRHPEVAD 196
+ RELF P D
Sbjct: 263 ---EAIRELFMDPPATD 276
Score = 47.0 bits (110), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 36/69 (52%), Gaps = 6/69 (8%)
Query: 231 SFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGWLYKEARE 290
+D +L G D+ + +RGIGPK A++ ++EH + +L D + +P + RE
Sbjct: 214 GLVDAAMLCGTDFNEGVRGIGPKTAVKAVREHGDLWGVL---DARGAEIPNA---EAIRE 267
Query: 291 LFRHPEIAD 299
LF P D
Sbjct: 268 LFMDPPATD 276
Score = 41.2 bits (95), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 43/91 (47%), Gaps = 3/91 (3%)
Query: 298 ADPETIELVADVAPSSIRESRKICIDASMSLYQFLIAVR--SEGNQLMSVDGEPTSHLMG 355
AD + + DVA + I E + +DA LY++L + + DG ++L+G
Sbjct: 4 ADLRDLAAIRDVAFTEI-EGSVVAVDAHNWLYRYLTTTVKWTSDEAYTTADGVEVANLIG 62
Query: 356 TFYRTIRLVEHGLKPIYVFDGKPPTLKSGEL 386
+ EH L P+ VFDG LK+ E+
Sbjct: 63 VVQGLPKFFEHDLIPVMVFDGAVTDLKADEV 93
>gi|359415965|ref|ZP_09208345.1| flap endonuclease-1 [Candidatus Haloredivivus sp. G17]
gi|358033683|gb|EHK02208.1| flap endonuclease-1 [Candidatus Haloredivivus sp. G17]
Length = 251
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 40/101 (39%), Positives = 61/101 (60%), Gaps = 8/101 (7%)
Query: 60 KAPCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARK--------LPVQ 111
+A E EAQ A M G VYA ++D D + FG++ ++R++T + RK + Q
Sbjct: 148 QASSEGEAQAAFMSSEGDVYAVGSQDWDCMLFGADRMVRNLTSRKTRKTSSGKRKEVKQQ 207
Query: 112 EFHLEKVLEGMELSHEEFIDLCILLGCDYCDSIRGIGPKRA 152
LEKVLE ++LS E+ + L +++G D+ D I GIGPK+A
Sbjct: 208 RIELEKVLEELDLSREQLVMLGMVMGTDFNDGIHGIGPKKA 248
Score = 75.5 bits (184), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 42/91 (46%), Positives = 52/91 (57%), Gaps = 8/91 (8%)
Query: 296 EIADPETIELVADVAPSSIRESRKICIDASMSLYQFLIAVRS-EGNQLMSVDGEPTSHLM 354
E+ +PE IE S R I IDA +LYQFL +R +G L DG+ TSHL
Sbjct: 7 ELIEPEEIEF-------SDLNDRVIAIDAMNTLYQFLSIIRQRDGTPLKDSDGDITSHLS 59
Query: 355 GTFYRTIRLVEHGLKPIYVFDGKPPTLKSGE 385
G FYR I L+E ++P+YVFDG P LK E
Sbjct: 60 GLFYRNINLLEKDIRPVYVFDGAIPDLKQKE 90
>gi|448496208|ref|ZP_21610310.1| flap endonuclease-1 [Halorubrum californiensis DSM 19288]
gi|445687084|gb|ELZ39377.1| flap endonuclease-1 [Halorubrum californiensis DSM 19288]
Length = 325
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 46/137 (33%), Positives = 68/137 (49%), Gaps = 10/137 (7%)
Query: 60 KAPCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVL 119
+AP E EAQCA M G V +ED D L FG+ LR +T +L L L
Sbjct: 150 EAPAEGEAQCAHMAATGTVDHAGSEDYDTLLFGAPTTLRQLTSKGDPEL----MDLAATL 205
Query: 120 EGMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEG 179
+ L + +D+ +L G D+ + +RG+GPK A++ ++EH + +LE D +P
Sbjct: 206 GDLGLDRQGLVDVAMLCGTDFNEGVRGVGPKTAVKAVREHGDLWGVLEARDAD---IPNA 262
Query: 180 WLYKEARELFRHPEVAD 196
+ RELF P D
Sbjct: 263 ---EAIRELFMDPPAED 276
Score = 47.8 bits (112), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 48/93 (51%), Gaps = 10/93 (10%)
Query: 231 SFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGWLYKEARE 290
+D+ +L G D+ + +RG+GPK A++ ++EH + +LE D +P + RE
Sbjct: 214 GLVDVAMLCGTDFNEGVRGVGPKTAVKAVREHGDLWGVLEARDAD---IPNA---EAIRE 267
Query: 291 LFRHPEIADPETIELVADVAPSSIRESRKICID 323
LF P D + + +V P + +R+ +D
Sbjct: 268 LFMDPPAED---VSVDTEVNP-DVEAAREYVVD 296
Score = 45.4 bits (106), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 30/97 (30%), Positives = 47/97 (48%), Gaps = 3/97 (3%)
Query: 298 ADPETIELVADVAPSSIRESRKICIDASMSLYQFLIAVR--SEGNQLMSVDGEPTSHLMG 355
AD + + DVA I E + +DA LY++L + + + DG ++L+G
Sbjct: 4 ADLRDLASIRDVAFEEI-EGSVVAVDAHNWLYRYLTTTVKWTSDEKYTTADGVEVANLIG 62
Query: 356 TFYRTIRLVEHGLKPIYVFDGKPPTLKSGELNKRMEK 392
+ EH L P+ VFDG LK+ E+ +R EK
Sbjct: 63 VVQGLPKFFEHDLIPVMVFDGAVTDLKADEVAERREK 99
>gi|409048628|gb|EKM58106.1| hypothetical protein PHACADRAFT_88937 [Phanerochaete carnosa
HHB-10118-sp]
Length = 538
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 41/107 (38%), Positives = 64/107 (59%), Gaps = 4/107 (3%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVLE 120
P EAEA A+MV G+ A+ED D + +G+ L+R++ R P+ + V
Sbjct: 352 GPFEAEALAASMVLHGQADYVASEDTDVIVYGAP-LMRNIA---KRSDPLVILNGTDVRA 407
Query: 121 GMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILE 167
+EL HE F+D +LLG D+ I+ +GP RA++ I+E+ SIE++LE
Sbjct: 408 ALELDHERFVDFALLLGTDFSQRIKNVGPTRALKFIREYGSIEQMLE 454
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 40/67 (59%), Gaps = 10/67 (14%)
Query: 205 LCILLGCDYCDSIRGIGPKRAIELLYS-FIDLCILLGCDYCDSIRGIGPKRAIELIKEHR 263
L IL G D + A+EL + F+D +LLG D+ I+ +GP RA++ I+E+
Sbjct: 397 LVILNGTDV---------RAALELDHERFVDFALLLGTDFSQRIKNVGPTRALKFIREYG 447
Query: 264 SIEKILE 270
SIE++LE
Sbjct: 448 SIEQMLE 454
>gi|294496492|ref|YP_003542985.1| flap endonuclease 1 [Methanohalophilus mahii DSM 5219]
gi|292667491|gb|ADE37340.1| flap endonuclease 1 [Methanohalophilus mahii DSM 5219]
Length = 339
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 39/91 (42%), Positives = 55/91 (60%), Gaps = 1/91 (1%)
Query: 318 RKICIDASMSLYQFLIAVRS-EGNQLMSVDGEPTSHLMGTFYRTIRLVEHGLKPIYVFDG 376
R + ID +LYQFL +R +G L G TSHL G YR L E G+KP++VFDG
Sbjct: 22 RTVAIDGYNTLYQFLSIIRQRDGTPLKDSRGNITSHLSGILYRMTNLFEAGIKPVFVFDG 81
Query: 377 KPPTLKSGELNKRMEKREDAQKALAKAQEQG 407
KPP K+ +++R + RE+A +A+E+G
Sbjct: 82 KPPDFKADTISQRKKSREEALTKWDEAKEKG 112
Score = 79.7 bits (195), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 41/118 (34%), Positives = 69/118 (58%), Gaps = 9/118 (7%)
Query: 60 KAPCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVL 119
+AP E EAQ A MV G +A++D D+L FG+ ++R++T + RKLP + +++
Sbjct: 148 QAPSEGEAQAAYMVNKGDADYSASQDYDSLLFGAPRVIRNLTITGKRKLPGKNVYIDVEP 207
Query: 120 EGMELSHE---------EFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILEN 168
E ++L + I + + +G DY + +GPK A++LIK++ SI KILE+
Sbjct: 208 ESIDLMQNIKLLDIDRRQLIGIALCVGTDYNKGLEKVGPKTALKLIKQYGSIHKILEH 265
Score = 39.7 bits (91), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 27/40 (67%)
Query: 232 FIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILEN 271
I + + +G DY + +GPK A++LIK++ SI KILE+
Sbjct: 226 LIGIALCVGTDYNKGLEKVGPKTALKLIKQYGSIHKILEH 265
Score = 38.9 bits (89), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 28/49 (57%)
Query: 3 LKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSSTTQGRLDSFF 51
LKW P ++ +V +LC +F+E+R+ +L KA +Q LD +F
Sbjct: 291 LKWKSPQKEKIVDFLCKQHDFSEERVLKAVDRLEKAGKQQSQQTLDQWF 339
Score = 38.5 bits (88), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 29/50 (58%)
Query: 408 KLKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSTTTQGRLDSFF 457
+LKW P ++ +V +LC +F+E+R+ +L KA +Q LD +F
Sbjct: 290 ELKWKSPQKEKIVDFLCKQHDFSEERVLKAVDRLEKAGKQQSQQTLDQWF 339
>gi|448474374|ref|ZP_21602233.1| flap endonuclease-1 [Halorubrum aidingense JCM 13560]
gi|445817681|gb|EMA67550.1| flap endonuclease-1 [Halorubrum aidingense JCM 13560]
Length = 325
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 45/137 (32%), Positives = 67/137 (48%), Gaps = 10/137 (7%)
Query: 60 KAPCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVL 119
+AP E EAQCA M G V +ED D L FG+ LR +T +L L L
Sbjct: 150 EAPAEGEAQCAHMAATGAVDHAGSEDYDTLLFGAPTTLRQLTSKGNPEL----MDLAATL 205
Query: 120 EGMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEG 179
+ + + + +D+ +L G D+ + +RG+GPK A++ I EH + +LE + +P
Sbjct: 206 DDLGVDRQGLVDIAMLCGTDFNEGVRGVGPKTAVKAIAEHGDLWGVLE---ARGAEIPNA 262
Query: 180 WLYKEARELFRHPEVAD 196
RELF P D
Sbjct: 263 ---AAIRELFMDPPAVD 276
Score = 47.0 bits (110), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 46/94 (48%), Gaps = 12/94 (12%)
Query: 231 SFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGWLYKEARE 290
+D+ +L G D+ + +RG+GPK A++ I EH + +LE + +P RE
Sbjct: 214 GLVDIAMLCGTDFNEGVRGVGPKTAVKAIAEHGDLWGVLE---ARGAEIPNA---AAIRE 267
Query: 291 LFRHPEIADPETIELVADVAPS-SIRESRKICID 323
LF DP +++ D A + + +R +D
Sbjct: 268 LFM-----DPPAVDVDVDTAVNPDVEAARSYVVD 296
Score = 40.8 bits (94), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 37/79 (46%), Gaps = 2/79 (2%)
Query: 316 ESRKICIDASMSLYQFLIAVR--SEGNQLMSVDGEPTSHLMGTFYRTIRLVEHGLKPIYV 373
E + +DA LY++L + + + DG ++L+G + EH L P+ V
Sbjct: 21 EGSVVAVDAHNWLYRYLTTTVKWTADRKYTTADGVEVANLIGIVQGLPKFFEHDLIPVMV 80
Query: 374 FDGKPPTLKSGELNKRMEK 392
FDG LK+ E+ R K
Sbjct: 81 FDGAVTDLKADEVADRRAK 99
>gi|335433586|ref|ZP_08558406.1| flap endonuclease-1 [Halorhabdus tiamatea SARL4B]
gi|334898592|gb|EGM36696.1| flap endonuclease-1 [Halorhabdus tiamatea SARL4B]
Length = 326
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 51/145 (35%), Positives = 72/145 (49%), Gaps = 18/145 (12%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVLE 120
AP E EAQ A M + G TED DAL FG+ LR +T S +L E L
Sbjct: 151 APAEGEAQAAYMARRGDADYVGTEDYDALLFGAPYTLRQLTSSGDPEL----MDFEATLA 206
Query: 121 GMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGW 180
+LS E+ +D+ +L G D+ + +RG GPK A++ I+EH + + E D
Sbjct: 207 EHDLSWEQLVDVALLCGTDFNEGVRGYGPKTAVKAIREHGDLWGVSEAED---------- 256
Query: 181 LYKE----ARELFRHPEVADPETIE 201
+Y E R+LF P V D ++E
Sbjct: 257 VYVENADRIRDLFLDPAVTDEYSLE 281
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 34/112 (30%), Positives = 60/112 (53%), Gaps = 3/112 (2%)
Query: 298 ADPETIELVADVAPSSIRESRKICIDASMSLYQFLIA-VRSEGNQL-MSVDGEPTSHLMG 355
AD I ++ DV+ + S + +DA LY++L V+ + + + DGE ++L+G
Sbjct: 4 ADLRDIAVIKDVSFEELGGS-IVAVDAHNWLYRYLTTTVKWTSDDIYTTADGEEVANLVG 62
Query: 356 TFYRTIRLVEHGLKPIYVFDGKPPTLKSGELNKRMEKREDAQKALAKAQEQG 407
+ E + P++VFDG LK E+ +R E+RE ++ L A+E+G
Sbjct: 63 VIQGLPKFFEADVTPVFVFDGAVTDLKDDEVKRRREQREQYEEDLEAAREEG 114
Score = 42.0 bits (97), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 39/77 (50%), Gaps = 14/77 (18%)
Query: 232 FIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGWLYKE---- 287
+D+ +L G D+ + +RG GPK A++ I+EH + + E D +Y E
Sbjct: 215 LVDVALLCGTDFNEGVRGYGPKTAVKAIREHGDLWGVSEAED----------VYVENADR 264
Query: 288 ARELFRHPEIADPETIE 304
R+LF P + D ++E
Sbjct: 265 IRDLFLDPAVTDEYSLE 281
>gi|448414274|ref|ZP_21577413.1| flap endonuclease-1 [Halosarcina pallida JCM 14848]
gi|445682567|gb|ELZ34984.1| flap endonuclease-1 [Halosarcina pallida JCM 14848]
Length = 326
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 46/137 (33%), Positives = 67/137 (48%), Gaps = 10/137 (7%)
Query: 60 KAPCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVL 119
+AP E EAQ + M K G +ED D L FG+ LR +T +L LE L
Sbjct: 150 EAPAEGEAQASHMAKRGDADYVGSEDYDTLLFGAPYTLRQLTSKGDPEL----MDLEATL 205
Query: 120 EGMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEG 179
+E++HE+ ID+ +L G D+ D + G+GPK A++ +K + +L+ D
Sbjct: 206 SSLEVTHEQLIDIAVLCGTDFNDGVSGVGPKTALKEVKARGDLWAVLDARDAYIDNA--- 262
Query: 180 WLYKEARELFRHPEVAD 196
RELF P V D
Sbjct: 263 ---DRVRELFLDPPVTD 276
Score = 56.2 bits (134), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 34/112 (30%), Positives = 61/112 (54%), Gaps = 3/112 (2%)
Query: 298 ADPETIELVADVAPSSIRESRKICIDASMSLYQFLIAVR--SEGNQLMSVDGEPTSHLMG 355
AD T+ ++DV+ + S + +DA LY++L + + + DGE ++L+G
Sbjct: 4 ADLRTLASLSDVSFDDVAGS-VVAVDAHNWLYRYLTTTVKFTREDVYTTADGEEVANLVG 62
Query: 356 TFYRTIRLVEHGLKPIYVFDGKPPTLKSGELNKRMEKREDAQKALAKAQEQG 407
+ EH L P++VFDG LK E+++R +RE A++ +A+E+G
Sbjct: 63 IVQGLPKFFEHDLTPVFVFDGGVTELKDAEVSERRAQREKAEELKREAEERG 114
Score = 40.8 bits (94), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 38/81 (46%), Gaps = 8/81 (9%)
Query: 232 FIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGWLYKEAREL 291
ID+ +L G D+ D + G+GPK A++ +K + +L+ D REL
Sbjct: 215 LIDIAVLCGTDFNDGVSGVGPKTALKEVKARGDLWAVLDARDAYIDNA------DRVREL 268
Query: 292 FRHPEIADPETIELVADVAPS 312
F P + D E D++P+
Sbjct: 269 FLDPPVTD--DYEFDTDLSPN 287
>gi|296108985|ref|YP_003615934.1| flap structure-specific endonuclease [methanocaldococcus infernus
ME]
gi|295433799|gb|ADG12970.1| flap structure-specific endonuclease [Methanocaldococcus infernus
ME]
Length = 323
Score = 80.1 bits (196), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 47/138 (34%), Positives = 80/138 (57%), Gaps = 14/138 (10%)
Query: 60 KAPCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVL 119
+AP E EAQ + M K G V+A ++D D+L +G+ ++R++T + K ++ L +VL
Sbjct: 145 QAPSEGEAQASYMAKKGDVWAVVSQDYDSLLYGAPRVVRNLTTT---KDELELIELNEVL 201
Query: 120 EGMELSHEEFIDLCILLGCDYC-DSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPE 178
E + +S ++ ID+ I++G DY I GIG KRA E+++ R + IL+ E
Sbjct: 202 ENLRISLDDLIDIAIMMGTDYNPKGIEGIGFKRAYEMVRA-RVAKDILKK---------E 251
Query: 179 GWLYKEARELFRHPEVAD 196
Y+E + +F++P V D
Sbjct: 252 VKNYEEIKNIFKNPRVTD 269
Score = 61.6 bits (148), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 29/67 (43%), Positives = 45/67 (67%), Gaps = 1/67 (1%)
Query: 316 ESRKICIDASMSLYQFLIAVR-SEGNQLMSVDGEPTSHLMGTFYRTIRLVEHGLKPIYVF 374
+ +K+ ID ++YQFL ++R +G+ L + G TS G FY+TI L+E+ + PI+VF
Sbjct: 20 KGKKLAIDGFNAIYQFLSSIRLKDGSPLTNKRGGITSAYNGIFYKTIMLLENDIIPIWVF 79
Query: 375 DGKPPTL 381
DG+PP L
Sbjct: 80 DGEPPKL 86
>gi|159905743|ref|YP_001549405.1| flap endonuclease-1 [Methanococcus maripaludis C6]
gi|159887236|gb|ABX02173.1| XPG I domain protein [Methanococcus maripaludis C6]
Length = 324
Score = 80.1 bits (196), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 44/138 (31%), Positives = 77/138 (55%), Gaps = 19/138 (13%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVLE 120
AP E EAQCA +VKA + ++D D++ +G+ +++++T S ++ LEK L
Sbjct: 149 APSEGEAQCAELVKANDAFCVISQDYDSILYGAENVVKNITSSNK---DIELIELEKTLS 205
Query: 121 GMELSHEEFIDLCILLGCDYC-DSIRGIGPKRAIELIKEHRSIEKI--LENIDTKKYTVP 177
+ +S ++ ID+ IL+G DY ++G GPK+AI+ +K+ + ++ I +EN
Sbjct: 206 ELNVSLDQLIDVAILIGTDYNPGGLKGFGPKKAIDTVKKGQMVKYISEIEN--------- 256
Query: 178 EGWLYKEARELFRHPEVA 195
Y E R++F P V
Sbjct: 257 ----YSEIRKIFDEPNVT 270
Score = 70.9 bits (172), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 45/127 (35%), Positives = 72/127 (56%), Gaps = 9/127 (7%)
Query: 317 SRKICIDASMSLYQFLIAVR-SEGNQLMSVDGEPTSHLMGTFYRTIRLVEHGLKPIYVFD 375
++ + IDA +YQFL ++R +G+ L + +GE TS G FY+TI ++E+ + PI+VFD
Sbjct: 21 NKTVAIDAMNVIYQFLSSIRLRDGSPLKNKNGEITSTYNGIFYKTIYMLENEMTPIWVFD 80
Query: 376 GKPPTLKSGELNKRMEKREDAQKALAKAQEQGKLKWSDPDEDGLVKYLCGDKNFAEDRIR 435
GK LK +R + R A + +A+EQ L + + KY NF + +I
Sbjct: 81 GKSHDLKEKTKEERRKSRNGALDSYLEAKEQNNL-------EEMQKY-AKRANFLDKKII 132
Query: 436 NGAKKLL 442
+ +KKLL
Sbjct: 133 DNSKKLL 139
>gi|435851449|ref|YP_007313035.1| flap structure-specific endonuclease [Methanomethylovorans
hollandica DSM 15978]
gi|433662079|gb|AGB49505.1| flap structure-specific endonuclease [Methanomethylovorans
hollandica DSM 15978]
Length = 341
Score = 79.7 bits (195), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 42/91 (46%), Positives = 57/91 (62%), Gaps = 1/91 (1%)
Query: 320 ICIDASMSLYQFLIAVRSE-GNQLMSVDGEPTSHLMGTFYRTIRLVEHGLKPIYVFDGKP 378
I IDA ++YQFL A+R + G+ L G PTSHL G F RT +L + +KPI++FDGKP
Sbjct: 24 IAIDAYNTIYQFLSAIRQKNGSLLTDASGNPTSHLTGLFSRTCKLRDANIKPIFIFDGKP 83
Query: 379 PTLKSGELNKRMEKREDAQKALAKAQEQGKL 409
P +K L KR E ++ A + A+E G L
Sbjct: 84 PQMKERTLEKRKECKQLAARNYEIAREGGDL 114
Score = 62.0 bits (149), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 39/140 (27%), Positives = 69/140 (49%), Gaps = 12/140 (8%)
Query: 72 MVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVLEGMELSH----- 126
M G ++D DA FG+ ++R++ + RKLP + ++ K E + L++
Sbjct: 160 MTLRGDADLVGSQDYDAFLFGAKNVVRNLGSTGKRKLPGKAAYVPKNPEHISLANSLGQL 219
Query: 127 ----EEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGWLY 182
E+ ID+ I +G D+ + I +GPK A++LI HR I +L +K +
Sbjct: 220 NITREQLIDVAICIGTDFNEGIHRVGPKTALKLILRHRDINTLLRE---EKKEINTCVSV 276
Query: 183 KEARELFRHPEVADPETIEF 202
+E R+ F +P V T+ +
Sbjct: 277 EEIRDFFMNPPVTTDYTLRW 296
Score = 40.8 bits (94), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 37/72 (51%), Gaps = 3/72 (4%)
Query: 232 FIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGWLYKEAREL 291
ID+ I +G D+ + I +GPK A++LI HR I +L +K + +E R+
Sbjct: 226 LIDVAICIGTDFNEGIHRVGPKTALKLILRHRDINTLLRE---EKKEINTCVSVEEIRDF 282
Query: 292 FRHPEIADPETI 303
F +P + T+
Sbjct: 283 FMNPPVTTDYTL 294
>gi|255080028|ref|XP_002503594.1| predicted protein [Micromonas sp. RCC299]
gi|226518861|gb|ACO64852.1| predicted protein [Micromonas sp. RCC299]
Length = 309
Score = 79.3 bits (194), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 52/146 (35%), Positives = 78/146 (53%), Gaps = 15/146 (10%)
Query: 61 APCEAEAQCAAMVK------AGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFH 114
AP EA+AQ AA+ + G V TED D + +G ++L + S+A
Sbjct: 154 APYEADAQIAALAQLGAKGDPGGVDIVFTEDSDLVAYGCPLVLFKLDKSKAGG------G 207
Query: 115 LEKVLEGMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDT-KK 173
+ L + HE+F++LC+L GCD+ +IRGIG K+A L+ +HRS+ +L + KK
Sbjct: 208 AKGPLNFIGWKHEQFLELCVLSGCDFLPNIRGIGIKKAHALVAKHRSVAAVLAVLHGDKK 267
Query: 174 YTVPEGW--LYKEARELFRHPEVADP 197
VP G+ ++ A FRH V DP
Sbjct: 268 IHVPPGYDDDFRRAFWTFRHARVYDP 293
Score = 60.1 bits (144), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 30/72 (41%), Positives = 45/72 (62%), Gaps = 3/72 (4%)
Query: 232 FIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDT-KKYTVPEGW--LYKEA 288
F++LC+L GCD+ +IRGIG K+A L+ +HRS+ +L + KK VP G+ ++ A
Sbjct: 222 FLELCVLSGCDFLPNIRGIGIKKAHALVAKHRSVAAVLAVLHGDKKIHVPPGYDDDFRRA 281
Query: 289 RELFRHPEIADP 300
FRH + DP
Sbjct: 282 FWTFRHARVYDP 293
>gi|448729889|ref|ZP_21712201.1| flap endonuclease-1 [Halococcus saccharolyticus DSM 5350]
gi|445794210|gb|EMA44763.1| flap endonuclease-1 [Halococcus saccharolyticus DSM 5350]
Length = 325
Score = 79.3 bits (194), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 49/137 (35%), Positives = 73/137 (53%), Gaps = 10/137 (7%)
Query: 60 KAPCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVL 119
+AP E EAQ A M ++G V +ED D L FG+ LR +T K + E L
Sbjct: 150 EAPAEGEAQAAHMARSGTVDYAGSEDYDTLLFGAPRTLRGLT----SKGDPECMEFEATL 205
Query: 120 EGMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEG 179
+L+ E+ +D+ IL G D+ + + G+GPK A++L++EH + LE D + G
Sbjct: 206 TEHDLTWEQLVDVGILCGTDFNEGVSGVGPKTAVKLVREHGDLWAALEAEDAY---IENG 262
Query: 180 WLYKEARELFRHPEVAD 196
L RELF +P+V D
Sbjct: 263 DLI---RELFLNPDVTD 276
Score = 47.4 bits (111), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 39/68 (57%), Gaps = 6/68 (8%)
Query: 232 FIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGWLYKEAREL 291
+D+ IL G D+ + + G+GPK A++L++EH + LE D + G L REL
Sbjct: 215 LVDVGILCGTDFNEGVSGVGPKTAVKLVREHGDLWAALEAEDAY---IENGDLI---REL 268
Query: 292 FRHPEIAD 299
F +P++ D
Sbjct: 269 FLNPDVTD 276
Score = 40.8 bits (94), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 32/106 (30%), Positives = 57/106 (53%), Gaps = 4/106 (3%)
Query: 306 VADVAPSSIRE--SRKICIDASMSLYQFLIA-VRSEGNQL-MSVDGEPTSHLMGTFYRTI 361
+A + P + E + IDA LY++L V+ + + + GE ++L+G
Sbjct: 9 LAAIEPIAFSELAGATVAIDAHNWLYRYLTTTVKWTSDAVYTTTAGEEVANLVGIVQGLP 68
Query: 362 RLVEHGLKPIYVFDGKPPTLKSGELNKRMEKREDAQKALAKAQEQG 407
+ EH + P++VFDG LK+ E+ +R E+RE A++ +A+E G
Sbjct: 69 KFFEHDVTPVFVFDGGVTDLKTNEVERRREQREQAEERAVEAREAG 114
>gi|448733248|ref|ZP_21715493.1| flap endonuclease-1 [Halococcus salifodinae DSM 8989]
gi|445802982|gb|EMA53282.1| flap endonuclease-1 [Halococcus salifodinae DSM 8989]
Length = 325
Score = 79.3 bits (194), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 51/137 (37%), Positives = 75/137 (54%), Gaps = 10/137 (7%)
Query: 60 KAPCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVL 119
+AP E EAQ A M ++G V +ED D L FG+ LR +T K + E L
Sbjct: 150 EAPAEGEAQAAHMARSGTVDYAGSEDYDTLLFGAPHTLRGLT----GKGDPECMEFEATL 205
Query: 120 EGMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEG 179
+ +L+ E+ +D+ IL G D+ + + G+GPK A++L++EH + LE D +Y V G
Sbjct: 206 KEHDLTWEQLVDVGILCGTDFNEGVSGVGPKTAVKLVREHGDLWAALEAED--RY-VENG 262
Query: 180 WLYKEARELFRHPEVAD 196
L RELF P+V D
Sbjct: 263 DLI---RELFLDPDVTD 276
Score = 47.4 bits (111), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 40/68 (58%), Gaps = 6/68 (8%)
Query: 232 FIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGWLYKEAREL 291
+D+ IL G D+ + + G+GPK A++L++EH + LE D +Y V G L REL
Sbjct: 215 LVDVGILCGTDFNEGVSGVGPKTAVKLVREHGDLWAALEAED--RY-VENGDLI---REL 268
Query: 292 FRHPEIAD 299
F P++ D
Sbjct: 269 FLDPDVTD 276
Score = 39.3 bits (90), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 37/69 (53%), Gaps = 2/69 (2%)
Query: 320 ICIDASMSLYQFLIA-VRSEGNQL-MSVDGEPTSHLMGTFYRTIRLVEHGLKPIYVFDGK 377
+ IDA LY++L V+ + + + GE ++L+G + EH + P++VFDG
Sbjct: 25 VAIDAHNWLYRYLTTTVKWTSDAVYTTAAGEEVANLIGVVQGLPKFFEHDITPVFVFDGG 84
Query: 378 PPTLKSGEL 386
LK+ E+
Sbjct: 85 VTDLKTDEV 93
>gi|118596596|dbj|BAF37957.1| flap endonuclease-1 [Thermoplasma sp. S01]
Length = 336
Score = 79.3 bits (194), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 51/127 (40%), Positives = 71/127 (55%), Gaps = 10/127 (7%)
Query: 317 SRKICIDASMSLYQFLIAVRS-EGNQLMSVDGEPTSHLMGTFYRTIRLVEHGLKPIYVFD 375
++ ID LYQ L VR +G LM G TSHL G FYRTI L+E+ ++P+YVFD
Sbjct: 21 NQTFSIDTYNILYQLLSNVRQYDGMPLMDSHGNVTSHLYGIFYRTINLLENKIRPVYVFD 80
Query: 376 GKPPTLKSGELNKRMEKREDAQKALAKAQEQGKLKWSDPDEDGLVKYLCGDKNFAEDRIR 435
GKP LK+ +++R +E A+ L +A E+G E+ L +Y N+ +I
Sbjct: 81 GKPSPLKNRTISERQLMKEKAKVELEEAIERG--------EEDLRQYYSR-INYITPQIV 131
Query: 436 NGAKKLL 442
N KKLL
Sbjct: 132 NDTKKLL 138
Score = 72.0 bits (175), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 46/152 (30%), Positives = 76/152 (50%), Gaps = 30/152 (19%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFH------ 114
AP E EAQ + M + V ++D D L FG+ +LR+ RK+P + +
Sbjct: 148 APSEGEAQASYMTRK-NVDGVISQDYDCLLFGARKVLRNFAIYGRRKVPRKNIYKTVYPE 206
Query: 115 ---LEKVLEGMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEH-------RSIEK 164
L++VL +++ ++ I + IL+G D+ + I+GIG K+A+ LIK+ R I K
Sbjct: 207 YIILDEVLSANQINQDQLIGIGILVGTDFNEGIKGIGAKKALALIKKEGDIKAVLRRIGK 266
Query: 165 ILENIDTKKYTVPEGWLYKEARELFRHPEVAD 196
+EN+D E + F++P V D
Sbjct: 267 DIENLD-------------EIIDFFKNPPVVD 285
Score = 42.4 bits (98), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 30/48 (62%)
Query: 3 LKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSSTTQGRLDSF 50
++ PD D + +LC + +F+ +RIR+ + L K ++TQ RLDSF
Sbjct: 288 FRFGKPDTDAIEHFLCDEHDFSRERIRDHLESLKKNNQASTQFRLDSF 335
Score = 42.0 bits (97), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 29/48 (60%)
Query: 409 LKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSTTTQGRLDSF 456
++ PD D + +LC + +F+ +RIR+ + L K +TQ RLDSF
Sbjct: 288 FRFGKPDTDAIEHFLCDEHDFSRERIRDHLESLKKNNQASTQFRLDSF 335
>gi|448407650|ref|ZP_21573845.1| flap endonuclease-1 [Halosimplex carlsbadense 2-9-1]
gi|445674900|gb|ELZ27435.1| flap endonuclease-1 [Halosimplex carlsbadense 2-9-1]
Length = 326
Score = 79.3 bits (194), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 51/163 (31%), Positives = 74/163 (45%), Gaps = 17/163 (10%)
Query: 41 STTQGRLDSFFTIRREEKR-------KAPCEAEAQCAAMVKAGKVYATATEDMDALTFGS 93
S TQ D+ + RE +AP E EAQ M + G V TED DAL G+
Sbjct: 124 SQTQRLTDTILSTTREVLELLDVPVIEAPAEGEAQATHMAREGAVDYVGTEDYDALLLGA 183
Query: 94 NILLRHMTFSEARKLPVQEFHLEKVLEGMELSHEEFIDLCILLGCDYCDSIRGIGPKRAI 153
+ LR +T +L E L+ +++ E+ +D IL+G D+ + I G GPK A+
Sbjct: 184 PLTLRQLTSKGDPEL----MDFEATLDDRDITWEQLVDAAILMGTDFNEGISGYGPKTAV 239
Query: 154 ELIKEHRSIEKILENIDTKKYTVPEGWLYKEARELFRHPEVAD 196
++EH I + E D R+LF +P V D
Sbjct: 240 TAVREHGDIWGVFEAEDVYVDNA------DRIRDLFLNPAVTD 276
Score = 47.4 bits (111), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 51/90 (56%), Gaps = 2/90 (2%)
Query: 320 ICIDASMSLYQFLIA-VRSEGNQL-MSVDGEPTSHLMGTFYRTIRLVEHGLKPIYVFDGK 377
+ +DA LY++L VR + + + DGE ++L+G + EH + P++VFDG
Sbjct: 25 VAVDAHNWLYRYLTTTVRWTNDSIYTTADGEEVANLVGVVQGLPKFFEHDITPVFVFDGS 84
Query: 378 PPTLKSGELNKRMEKREDAQKALAKAQEQG 407
LK E+ +R E RE ++ L +A+E+G
Sbjct: 85 VVDLKDDEVEQRREDREKREEQLEQAREEG 114
Score = 43.5 bits (101), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 32/68 (47%), Gaps = 6/68 (8%)
Query: 232 FIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGWLYKEAREL 291
+D IL+G D+ + I G GPK A+ ++EH I + E D R+L
Sbjct: 215 LVDAAILMGTDFNEGISGYGPKTAVTAVREHGDIWGVFEAEDVYVDNA------DRIRDL 268
Query: 292 FRHPEIAD 299
F +P + D
Sbjct: 269 FLNPAVTD 276
>gi|388854880|emb|CCF51561.1| related to EXO1-exonuclease which interacts with Msh2p [Ustilago
hordei]
Length = 813
Score = 79.3 bits (194), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 56/181 (30%), Positives = 90/181 (49%), Gaps = 4/181 (2%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFGSN-ILLRHMTFSEARKLPVQEFHLEKVL 119
AP EA+AQ A + K G + A TED D L FG N +L + A ++ + F + +
Sbjct: 147 APYEADAQLAYLEKCGAIDAVLTEDSDLLVFGCNTVLFKLDQAGNAVEIKQERFWTNRQI 206
Query: 120 EGMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTK-KYTVPE 178
+ EF + IL GCDY SI G+G K A L++ H++++K+L+ I + K +P
Sbjct: 207 TFSGWTAVEFRQMAILSGCDYLPSIVGMGLKNAHRLLRRHKTVDKVLQVIRLEGKMRIPP 266
Query: 179 GWL--YKEARELFRHPEVADPETIEFIDLCILLGCDYCDSIRGIGPKRAIELLYSFIDLC 236
+ +++A F H V DP + + + L L + D + IG E+ + D
Sbjct: 267 TYASEFRKAELTFVHQRVFDPTSSKVVTLTPLPSGTHDDMLPFIGAHIEDEMARAIADGI 326
Query: 237 I 237
I
Sbjct: 327 I 327
Score = 49.7 bits (117), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 46/78 (58%), Gaps = 3/78 (3%)
Query: 232 FIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTK-KYTVPEGWL--YKEA 288
F + IL GCDY SI G+G K A L++ H++++K+L+ I + K +P + +++A
Sbjct: 216 FRQMAILSGCDYLPSIVGMGLKNAHRLLRRHKTVDKVLQVIRLEGKMRIPPTYASEFRKA 275
Query: 289 RELFRHPEIADPETIELV 306
F H + DP + ++V
Sbjct: 276 ELTFVHQRVFDPTSSKVV 293
>gi|389848285|ref|YP_006350524.1| flap endonuclease-1 [Haloferax mediterranei ATCC 33500]
gi|448618490|ref|ZP_21666727.1| flap endonuclease-1 [Haloferax mediterranei ATCC 33500]
gi|388245591|gb|AFK20537.1| flap endonuclease-1 [Haloferax mediterranei ATCC 33500]
gi|445746861|gb|ELZ98319.1| flap endonuclease-1 [Haloferax mediterranei ATCC 33500]
Length = 326
Score = 79.3 bits (194), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 44/137 (32%), Positives = 70/137 (51%), Gaps = 10/137 (7%)
Query: 60 KAPCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVL 119
+AP E EAQ + M + G +ED D L FG+ LR +T +L L+ L
Sbjct: 150 EAPAEGEAQASYMARKGDADYVGSEDYDTLLFGAPYTLRQLTSKGNPEL----MDLDATL 205
Query: 120 EGMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEG 179
E ++S E+ +D+ +L G D+ + I G+GPK A++ +K+H + +LE + ++P
Sbjct: 206 EKHDISWEQLVDIAMLCGTDFNEGITGVGPKTAVKEVKKHGDLWSVLE---ARGDSIPNA 262
Query: 180 WLYKEARELFRHPEVAD 196
RE F P V D
Sbjct: 263 ---DRVREFFLDPPVTD 276
Score = 47.4 bits (111), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 28/99 (28%), Positives = 52/99 (52%), Gaps = 3/99 (3%)
Query: 298 ADPETIELVADVAPSSIRESRKICIDASMSLYQFLIAV--RSEGNQLMSVDGEPTSHLMG 355
AD T+ +++V+ + S + +DA LY++L + + + +GE ++L+G
Sbjct: 4 ADLRTLAALSEVSFDEVAGS-VVAVDAHNWLYRYLTTTVKWTSSEKYTTSEGEEVANLVG 62
Query: 356 TFYRTIRLVEHGLKPIYVFDGKPPTLKSGELNKRMEKRE 394
+ EH L P++VFDG +K E+ KR ++RE
Sbjct: 63 IVQGLPKFFEHDLTPVFVFDGGVTEMKDDEVAKRRKQRE 101
Score = 44.7 bits (104), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 36/68 (52%), Gaps = 6/68 (8%)
Query: 232 FIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGWLYKEAREL 291
+D+ +L G D+ + I G+GPK A++ +K+H + +LE + ++P RE
Sbjct: 215 LVDIAMLCGTDFNEGITGVGPKTAVKEVKKHGDLWSVLE---ARGDSIPNA---DRVREF 268
Query: 292 FRHPEIAD 299
F P + D
Sbjct: 269 FLDPPVTD 276
>gi|255562588|ref|XP_002522300.1| exonuclease, putative [Ricinus communis]
gi|223538553|gb|EEF40158.1| exonuclease, putative [Ricinus communis]
Length = 629
Score = 79.3 bits (194), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 54/180 (30%), Positives = 88/180 (48%), Gaps = 6/180 (3%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFG-SNILLRHMTFSEARKLPVQEFHLEKVL 119
AP EA+AQ + + +V A TED D + FG I+ + + + + L K L
Sbjct: 117 APYEADAQMTFLAISKQVDAVITEDSDLIPFGCPRIVFKMDKYGQGIEFQYSRLQLNKEL 176
Query: 120 EGMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEG 179
+HE + +CIL GCDY S+ G+G KRA LI + +S +K+++++ +VP
Sbjct: 177 SFSGFTHEMILQMCILSGCDYLQSLPGMGLKRAHALITKFKSYDKVIKHLKYSTISVPPL 236
Query: 180 W--LYKEARELFRHPEVADP---ETIEFIDLCILLGCDYCDSIRGIGPKRAIELLYSFID 234
+ +++A F+H V DP + I DL LG ++ R R + S +D
Sbjct: 237 YEESFRKAILTFQHQRVYDPIAEDIIHLSDLADNLGFASLEAKRNFRAPRTSPINPSPVD 296
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 50/83 (60%), Gaps = 4/83 (4%)
Query: 232 FIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGW--LYKEAR 289
+ +CIL GCDY S+ G+G KRA LI + +S +K+++++ +VP + +++A
Sbjct: 186 ILQMCILSGCDYLQSLPGMGLKRAHALITKFKSYDKVIKHLKYSTISVPPLYEESFRKAI 245
Query: 290 ELFRHPEIADP--ETIELVADVA 310
F+H + DP E I ++D+A
Sbjct: 246 LTFQHQRVYDPIAEDIIHLSDLA 268
>gi|393217599|gb|EJD03088.1| PIN domain-like protein [Fomitiporia mediterranea MF3/22]
Length = 546
Score = 79.0 bits (193), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 48/147 (32%), Positives = 77/147 (52%), Gaps = 11/147 (7%)
Query: 60 KAPCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVL 119
P EAE +++V+ G + A+ED D L +G+ LLR+MT +R + E+V
Sbjct: 349 NGPYEAEGLASSLVRHGLAHFVASEDTDVLVYGAT-LLRNMT---SRHGAIVAISSEEVR 404
Query: 120 EGMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEG 179
+ LS F+D +L+G D+ +R +GP RA+ I H IE+I++ +YT P+
Sbjct: 405 RALRLSRAAFMDFALLIGTDFSSRLRNVGPVRALNFISTHARIEQIIKK--ETRYTPPDI 462
Query: 180 WLY----KEARELFRH-PEVADPETIE 201
Y + AR++F P V E +E
Sbjct: 463 KTYLAQIRRARQIFTTLPPVPRKELLE 489
Score = 48.5 bits (114), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 43/75 (57%), Gaps = 7/75 (9%)
Query: 223 KRAIELL-YSFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPE 281
+RA+ L +F+D +L+G D+ +R +GP RA+ I H IE+I++ +YT P+
Sbjct: 404 RRALRLSRAAFMDFALLIGTDFSSRLRNVGPVRALNFISTHARIEQIIKK--ETRYTPPD 461
Query: 282 GWLY----KEARELF 292
Y + AR++F
Sbjct: 462 IKTYLAQIRRARQIF 476
>gi|290559766|gb|EFD93090.1| XPG I domain protein [Candidatus Parvarchaeum acidophilus ARMAN-5]
Length = 332
Score = 79.0 bits (193), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 43/133 (32%), Positives = 77/133 (57%), Gaps = 11/133 (8%)
Query: 60 KAPCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLE--- 116
+AP E EAQ A M G VYA A++D D + FG+ ++R++ + RK+ + ++
Sbjct: 145 QAPAEGEAQAAWMSGKGLVYAAASQDYDTILFGAKRVIRNLNINNKRKISRKGITVQVNP 204
Query: 117 KVLEG------MELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENID 170
+++E + + E+ I + + G DY + GIGP++A+ L+KE+ S+EK+LE+ D
Sbjct: 205 EIIESDYNLKKLGVDREKMIVVALFTGTDYNKGVDGIGPRKALNLVKEN-SVEKLLESYD 263
Query: 171 TKK-YTVPEGWLY 182
+ Y + E + Y
Sbjct: 264 FRSDYDIKEVFQY 276
Score = 70.9 bits (172), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 33/81 (40%), Positives = 51/81 (62%), Gaps = 1/81 (1%)
Query: 318 RKICIDASMSLYQFLIAVR-SEGNQLMSVDGEPTSHLMGTFYRTIRLVEHGLKPIYVFDG 376
+ I IDA ++QFL +R ++G+ L G T+HL G FYR I ++E+G+ P++VFDG
Sbjct: 22 KTIAIDAFNWIFQFLTTIRLADGSYLTDSKGRVTTHLNGIFYRCISMLENGINPVFVFDG 81
Query: 377 KPPTLKSGELNKRMEKREDAQ 397
K P K L +R +E+A+
Sbjct: 82 KAPRFKKETLKERESIKEEAR 102
Score = 45.8 bits (107), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 49/89 (55%), Gaps = 13/89 (14%)
Query: 233 IDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKK-YTVPEGWLYKEAREL 291
I + + G DY + GIGP++A+ L+KE+ S+EK+LE+ D + Y + E + Y
Sbjct: 224 IVVALFTGTDYNKGVDGIGPRKALNLVKEN-SVEKLLESYDFRSDYDIKEVFQY------ 276
Query: 292 FRHPEIADPETIELVADVAPSSIRESRKI 320
P+T+E+ D+ S+++ + +
Sbjct: 277 -----FLTPDTVEVQNDLKLGSMQKEKLV 300
>gi|238881502|gb|EEQ45140.1| conserved hypothetical protein [Candida albicans WO-1]
Length = 990
Score = 79.0 bits (193), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 44/117 (37%), Positives = 69/117 (58%), Gaps = 5/117 (4%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHL-EKVL 119
AP EAEAQCA + K G V T+D D FG + + ++M F + + + EF+L + +
Sbjct: 747 APMEAEAQCAELYKIGLVDGIVTDDSDCFLFGGDKIYKNM-FDQKQYV---EFYLQDDLF 802
Query: 120 EGMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTV 176
M L+ + I+L +LLG DY + I+GIGP +A+E++ E ++EK E D +V
Sbjct: 803 NKMALTQHKLIELALLLGSDYTEGIKGIGPVQAMEILAEFGNLEKFKEWFDKHTKSV 859
Score = 70.1 bits (170), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 40/93 (43%), Positives = 56/93 (60%), Gaps = 15/93 (16%)
Query: 318 RKICIDASMSLYQFLIAVRS-EGNQLMSVDGEPTSHLMGTFYRTIRLVEHGLKPIYVFDG 376
+K+ IDAS+ +YQFL A+R +GN L P+SH++G F R +L+ G+ PI+VFDG
Sbjct: 25 KKLAIDASIWIYQFLKAMRDKDGNSL------PSSHIIGFFRRICKLLYFGILPIFVFDG 78
Query: 377 KPPTLKSGELNKRMEKRED--------AQKALA 401
P LK +N R ++RE AQK LA
Sbjct: 79 GVPALKKQTINNRKQRREKNSESRQETAQKLLA 111
Score = 46.6 bits (109), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 32/50 (64%)
Query: 230 YSFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTV 279
+ I+L +LLG DY + I+GIGP +A+E++ E ++EK E D +V
Sbjct: 810 HKLIELALLLGSDYTEGIKGIGPVQAMEILAEFGNLEKFKEWFDKHTKSV 859
Score = 44.7 bits (104), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 51/101 (50%), Gaps = 6/101 (5%)
Query: 202 FIDLCILLGCDYCDSIRGIGPKRAIELLYSFIDLCILLGCDYCDSIRGIGPKRAIELIKE 261
I+L +LLG DY + I+GIGP +A+E+L F +L + + + K EL K
Sbjct: 812 LIELALLLGSDYTEGIKGIGPVQAMEILAEFGNLEKFKEW-FDKHTKSVADK--TELTKL 868
Query: 262 HRSIEKILENIDTKKYTVPEGWLYKEARELFRHPEIADPET 302
+S +L+ I K +P+ + K + + PE+ +T
Sbjct: 869 QKS---LLDRIKKGKLYLPDSFPDKVVEQAYISPEVDSDKT 906
>gi|68486229|ref|XP_709963.1| hypothetical protein CaO19.1324 [Candida albicans SC5314]
gi|68486286|ref|XP_713000.1| hypothetical protein CaO19.8904 [Candida albicans SC5314]
gi|46434429|gb|EAK93839.1| hypothetical protein CaO19.8904 [Candida albicans SC5314]
gi|46434462|gb|EAK93871.1| hypothetical protein CaO19.1324 [Candida albicans SC5314]
Length = 990
Score = 79.0 bits (193), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 44/117 (37%), Positives = 69/117 (58%), Gaps = 5/117 (4%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHL-EKVL 119
AP EAEAQCA + K G V T+D D FG + + ++M F + + + EF+L + +
Sbjct: 747 APMEAEAQCAELYKIGLVDGIVTDDSDCFLFGGDKIYKNM-FDQKQYV---EFYLQDDLF 802
Query: 120 EGMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTV 176
M L+ + I+L +LLG DY + I+GIGP +A+E++ E ++EK E D +V
Sbjct: 803 NKMALTQHKLIELALLLGSDYTEGIKGIGPVQAMEILAEFGNLEKFKEWFDKHTKSV 859
Score = 70.1 bits (170), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 40/93 (43%), Positives = 56/93 (60%), Gaps = 15/93 (16%)
Query: 318 RKICIDASMSLYQFLIAVRS-EGNQLMSVDGEPTSHLMGTFYRTIRLVEHGLKPIYVFDG 376
+K+ IDAS+ +YQFL A+R +GN L P+SH++G F R +L+ G+ PI+VFDG
Sbjct: 25 KKLAIDASIWIYQFLKAMRDKDGNSL------PSSHIIGFFRRICKLLYFGILPIFVFDG 78
Query: 377 KPPTLKSGELNKRMEKRED--------AQKALA 401
P LK +N R ++RE AQK LA
Sbjct: 79 GVPALKKQTINNRKQRREKNSESRQETAQKLLA 111
Score = 46.6 bits (109), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 32/50 (64%)
Query: 230 YSFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTV 279
+ I+L +LLG DY + I+GIGP +A+E++ E ++EK E D +V
Sbjct: 810 HKLIELALLLGSDYTEGIKGIGPVQAMEILAEFGNLEKFKEWFDKHTKSV 859
Score = 45.4 bits (106), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 51/101 (50%), Gaps = 6/101 (5%)
Query: 202 FIDLCILLGCDYCDSIRGIGPKRAIELLYSFIDLCILLGCDYCDSIRGIGPKRAIELIKE 261
I+L +LLG DY + I+GIGP +A+E+L F +L + + + K EL K
Sbjct: 812 LIELALLLGSDYTEGIKGIGPVQAMEILAEFGNLEKFKEW-FDKHTKSVADK--TELTKL 868
Query: 262 HRSIEKILENIDTKKYTVPEGWLYKEARELFRHPEIADPET 302
+S +L+ I K +P+ + K + + PE+ +T
Sbjct: 869 QKS---LLDRIKKGKLYLPDSFPDKVVEQAYMSPEVDSDKT 906
>gi|448634703|ref|ZP_21675101.1| flap endonuclease-1 [Haloarcula vallismortis ATCC 29715]
gi|445749676|gb|EMA01121.1| flap endonuclease-1 [Haloarcula vallismortis ATCC 29715]
Length = 326
Score = 79.0 bits (193), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 49/149 (32%), Positives = 73/149 (48%), Gaps = 22/149 (14%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVLE 120
AP E E Q + M + G V TED DAL FG+ + LR +T +L E L
Sbjct: 151 APAEGEGQASVMARRGDVDYVGTEDYDALLFGAPMTLRQITSKGDPEL----MDFEATLS 206
Query: 121 GMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKIL----ENIDTKKYTV 176
+L+ E+ +D IL+G D+ + I GIGPK A++ + EH + +L E+ID
Sbjct: 207 QHDLTWEQLVDAAILMGTDFNEGISGIGPKTAVKELHEHGDLYAVLEARSEHIDHA---- 262
Query: 177 PEGWLYKEARELFRHPEVAD----PETIE 201
R+LF P V D P++++
Sbjct: 263 ------DRIRDLFLDPAVTDDYVIPDSVD 285
Score = 45.4 bits (106), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 28/100 (28%), Positives = 48/100 (48%), Gaps = 18/100 (18%)
Query: 232 FIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKIL----ENIDTKKYTVPEGWLYKE 287
+D IL+G D+ + I GIGPK A++ + EH + +L E+ID
Sbjct: 215 LVDAAILMGTDFNEGISGIGPKTAVKELHEHGDLYAVLEARSEHIDHA----------DR 264
Query: 288 ARELFRHPEIAD----PETIELVADVAPSSIRESRKICID 323
R+LF P + D P++++ D A + + E ++ D
Sbjct: 265 IRDLFLDPAVTDDYVIPDSVDPDIDAARAFVTEQWEVDAD 304
Score = 43.5 bits (101), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 30/108 (27%), Positives = 49/108 (45%), Gaps = 21/108 (19%)
Query: 195 ADPETIEF--------------IDLCILLGCDYCDSIRGIGPKRAIELLYSFIDLCILLG 240
DPE ++F +D IL+G D+ + I GIGPK A++ L+ DL +L
Sbjct: 194 GDPELMDFEATLSQHDLTWEQLVDAAILMGTDFNEGISGIGPKTAVKELHEHGDLYAVLE 253
Query: 241 C-----DYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGW 283
D+ D IR + A+ ++ + + +ID + V E W
Sbjct: 254 ARSEHIDHADRIRDLFLDPAV--TDDYVIPDSVDPDIDAARAFVTEQW 299
Score = 39.7 bits (91), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 44/88 (50%), Gaps = 5/88 (5%)
Query: 298 ADPETIELVADVAPSSIRESRKICIDASMSLYQFL---IAVRSEGNQLMSVDGEPTSHLM 354
AD ++ ++DV+ + S + +DA LY++L + SE S GE ++L+
Sbjct: 4 ADLRSLAALSDVSFGDLGGS-VVAVDAHNWLYRYLTTTVKFTSEAKYTTS-GGEEVANLI 61
Query: 355 GTFYRTIRLVEHGLKPIYVFDGKPPTLK 382
G + EH L P++VFDG LK
Sbjct: 62 GVIQGLPKFFEHDLTPVFVFDGAVTDLK 89
>gi|322369323|ref|ZP_08043888.1| flap endonuclease-1 [Haladaptatus paucihalophilus DX253]
gi|320551055|gb|EFW92704.1| flap endonuclease-1 [Haladaptatus paucihalophilus DX253]
Length = 326
Score = 79.0 bits (193), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 45/137 (32%), Positives = 69/137 (50%), Gaps = 10/137 (7%)
Query: 60 KAPCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVL 119
+AP E EAQ A M + G V TED DAL G+ + LR +T +L E L
Sbjct: 150 EAPAEGEAQAAHMARTGAVDYAGTEDYDALLLGAPLTLRQLTSKGNPEL----MDFEATL 205
Query: 120 EGMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEG 179
+ +++ E+ +D+ IL G D+ + + G+GPK A++ + EH + +LE D V
Sbjct: 206 DEHDITWEQLVDIAILCGTDFNEGVSGVGPKTALKGVTEHGDLWGVLEERDAYIENV--- 262
Query: 180 WLYKEARELFRHPEVAD 196
R +F P+V D
Sbjct: 263 ---DVIRGMFLEPDVTD 276
Score = 46.2 bits (108), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 42/79 (53%), Gaps = 2/79 (2%)
Query: 316 ESRKICIDASMSLYQFLIA-VRSEGNQLMSV-DGEPTSHLMGTFYRTIRLVEHGLKPIYV 373
E + IDA LY++L V+ +++ + DG ++L+G + EH L P++V
Sbjct: 21 EGSLVAIDAHNWLYRYLTTTVKWTRDEVYTTEDGTEVANLVGVVQGLPKFFEHDLTPVFV 80
Query: 374 FDGKPPTLKSGELNKRMEK 392
FDG LKS E+ R E+
Sbjct: 81 FDGHVTDLKSDEIEDRREQ 99
Score = 41.6 bits (96), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 34/68 (50%), Gaps = 6/68 (8%)
Query: 232 FIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGWLYKEAREL 291
+D+ IL G D+ + + G+GPK A++ + EH + +LE D V R +
Sbjct: 215 LVDIAILCGTDFNEGVSGVGPKTALKGVTEHGDLWGVLEERDAYIENV------DVIRGM 268
Query: 292 FRHPEIAD 299
F P++ D
Sbjct: 269 FLEPDVTD 276
>gi|371944946|gb|AEX62767.1| putative endonuclease of the XPG family [Moumouvirus Monve]
Length = 343
Score = 79.0 bits (193), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 43/119 (36%), Positives = 66/119 (55%), Gaps = 6/119 (5%)
Query: 61 APCEAEAQCAAMV----KAGKVYATA--TEDMDALTFGSNILLRHMTFSEARKLPVQEFH 114
AP EA+ C+ + + G Y ++D D L G+ L + M ++ V
Sbjct: 155 APGEADVVCSWLAARRDENGDRYVKGVCSDDSDMLALGAPYLFKDMLKFMSKNKEVTIIS 214
Query: 115 LEKVLEGMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKK 173
L K L L+ +F DLC+LLGCDYCD+I+GIGPK A IKE+ S+E++++ + K+
Sbjct: 215 LNKTLTKTGLTMRQFTDLCVLLGCDYCDNIKGIGPKTAYNKIKEYGSLEEVIKMVHKKR 273
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 31/80 (38%), Positives = 53/80 (66%)
Query: 319 KICIDASMSLYQFLIAVRSEGNQLMSVDGEPTSHLMGTFYRTIRLVEHGLKPIYVFDGKP 378
K+ +D S+ ++Q +IA+RS G + + GE TSHL G Y+ + +++G+ PI VFDGK
Sbjct: 31 KVSVDMSLLIHQTVIAMRSNGKDMKNRKGELTSHLYGILYKMLVFLQNGMTPICVFDGKA 90
Query: 379 PTLKSGELNKRMEKREDAQK 398
P +K+ ++ R K++ A+K
Sbjct: 91 PDIKNKTVDIRRSKKDAAEK 110
Score = 60.8 bits (146), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/45 (55%), Positives = 36/45 (80%)
Query: 232 FIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKK 276
F DLC+LLGCDYCD+I+GIGPK A IKE+ S+E++++ + K+
Sbjct: 229 FTDLCVLLGCDYCDNIKGIGPKTAYNKIKEYGSLEEVIKMVHKKR 273
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/25 (76%), Positives = 23/25 (92%)
Query: 201 EFIDLCILLGCDYCDSIRGIGPKRA 225
+F DLC+LLGCDYCD+I+GIGPK A
Sbjct: 228 QFTDLCVLLGCDYCDNIKGIGPKTA 252
>gi|448651213|ref|ZP_21680282.1| flap endonuclease-1 [Haloarcula californiae ATCC 33799]
gi|445770740|gb|EMA21798.1| flap endonuclease-1 [Haloarcula californiae ATCC 33799]
Length = 326
Score = 79.0 bits (193), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 50/149 (33%), Positives = 72/149 (48%), Gaps = 22/149 (14%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVLE 120
AP E E Q + M + G V TED DAL FG+ + LR +T +L LE
Sbjct: 151 APAEGEGQASVMARRGDVDYVGTEDYDALLFGAPMTLRQITSKGDPEL----MDFAATLE 206
Query: 121 GMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKIL----ENIDTKKYTV 176
+L+ E+ +D IL+G D+ + I GIGPK A++ + EH + +L E+ID
Sbjct: 207 HHDLTWEQLVDAAILMGTDFNEGISGIGPKTAVKDLHEHGDLYTVLAARGEHIDHA---- 262
Query: 177 PEGWLYKEARELFRHPEVAD----PETIE 201
R+LF P D P++IE
Sbjct: 263 ------DRIRDLFLDPAATDDYEIPDSIE 285
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 35/113 (30%), Positives = 59/113 (52%), Gaps = 5/113 (4%)
Query: 298 ADPETIELVADVAPSSIRESRKICIDASMSLYQFL---IAVRSEGNQLMSVDGEPTSHLM 354
AD ++ ++DV+ + S + +DA LY++L + SE S +GE ++L+
Sbjct: 4 ADLRSLAALSDVSFDDLGGS-VVAVDAHNWLYRYLTTTVKFTSESKYTTS-NGEEVANLI 61
Query: 355 GTFYRTIRLVEHGLKPIYVFDGKPPTLKSGELNKRMEKREDAQKALAKAQEQG 407
G + EH + P++VFDG LK E+ KR E+R+ + L A+E G
Sbjct: 62 GVVQGLPKFFEHDMTPVFVFDGAVTDLKDDEVEKRREQRQKYESELEAAREAG 114
Score = 43.9 bits (102), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 30/108 (27%), Positives = 48/108 (44%), Gaps = 21/108 (19%)
Query: 195 ADPETIEF--------------IDLCILLGCDYCDSIRGIGPKRAIELLYSFIDLCILLG 240
DPE ++F +D IL+G D+ + I GIGPK A++ L+ DL +L
Sbjct: 194 GDPELMDFAATLEHHDLTWEQLVDAAILMGTDFNEGISGIGPKTAVKDLHEHGDLYTVLA 253
Query: 241 C-----DYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGW 283
D+ D IR + A ++ + I +ID + V + W
Sbjct: 254 ARGEHIDHADRIRDLFLDPAA--TDDYEIPDSIEPDIDAARTFVTDQW 299
Score = 43.9 bits (102), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 47/100 (47%), Gaps = 18/100 (18%)
Query: 232 FIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKIL----ENIDTKKYTVPEGWLYKE 287
+D IL+G D+ + I GIGPK A++ + EH + +L E+ID
Sbjct: 215 LVDAAILMGTDFNEGISGIGPKTAVKDLHEHGDLYTVLAARGEHIDHA----------DR 264
Query: 288 ARELFRHPEIAD----PETIELVADVAPSSIRESRKICID 323
R+LF P D P++IE D A + + + ++ D
Sbjct: 265 IRDLFLDPAATDDYEIPDSIEPDIDAARTFVTDQWEVDPD 304
>gi|134045325|ref|YP_001096811.1| flap endonuclease-1 [Methanococcus maripaludis C5]
gi|132662950|gb|ABO34596.1| flap endonuclease 1 [Methanococcus maripaludis C5]
Length = 324
Score = 79.0 bits (193), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 42/136 (30%), Positives = 76/136 (55%), Gaps = 15/136 (11%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVLE 120
AP E EAQCA +VK+ + ++D D++ +G+ +++++T S ++ LEK L
Sbjct: 149 APSEGEAQCAELVKSNDAFCVISQDYDSILYGAENVVKNITSSNK---DIELIELEKTLS 205
Query: 121 GMELSHEEFIDLCILLGCDYC-DSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEG 179
+ +S ++ ID+ IL+G DY ++G GPK+AI+ +K+ + +E + I+
Sbjct: 206 ELNVSLDQLIDVAILIGTDYNPGGLKGFGPKKAIDTVKKGK-MENYISEIEN-------- 256
Query: 180 WLYKEARELFRHPEVA 195
Y E R++F P V
Sbjct: 257 --YSEIRKIFDEPNVT 270
Score = 68.9 bits (167), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 44/127 (34%), Positives = 71/127 (55%), Gaps = 9/127 (7%)
Query: 317 SRKICIDASMSLYQFLIAVR-SEGNQLMSVDGEPTSHLMGTFYRTIRLVEHGLKPIYVFD 375
++ + IDA +YQFL ++R +G+ L + +GE TS G FY+TI ++E+ + PI+VFD
Sbjct: 21 NKTVAIDAMNVIYQFLSSIRLRDGSPLKNKNGEITSTYNGIFYKTIYMLENEMTPIWVFD 80
Query: 376 GKPPTLKSGELNKRMEKREDAQKALAKAQEQGKLKWSDPDEDGLVKYLCGDKNFAEDRIR 435
GK LK +R + R A + +A+EQ L + + KY NF + +
Sbjct: 81 GKSHDLKEKTKEERRKSRNGALDSYLEAKEQNNL-------EEMQKY-AKRANFLDKKTI 132
Query: 436 NGAKKLL 442
+ +KKLL
Sbjct: 133 DNSKKLL 139
>gi|55376971|ref|YP_134821.1| flap endonuclease-1 [Haloarcula marismortui ATCC 43049]
gi|74520713|sp|Q5V5T7.1|FEN_HALMA RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|55229696|gb|AAV45115.1| DNA repair protein Rad2 [Haloarcula marismortui ATCC 43049]
Length = 326
Score = 78.6 bits (192), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 50/149 (33%), Positives = 72/149 (48%), Gaps = 22/149 (14%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVLE 120
AP E E Q + M + G V TED DAL FG+ + LR +T +L LE
Sbjct: 151 APAEGEGQASVMARRGDVDYVGTEDYDALLFGAPMTLRQITSKGDPEL----MDFAATLE 206
Query: 121 GMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKIL----ENIDTKKYTV 176
+L+ E+ +D IL+G D+ + I GIGPK A++ + EH + +L E+ID
Sbjct: 207 HHDLTWEQLVDAAILMGTDFNEGISGIGPKTAVKDLHEHGDLYTVLAARGEHIDHA---- 262
Query: 177 PEGWLYKEARELFRHPEVAD----PETIE 201
R+LF P D P++IE
Sbjct: 263 ------DRIRDLFLDPAATDDYEIPDSIE 285
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 35/113 (30%), Positives = 59/113 (52%), Gaps = 5/113 (4%)
Query: 298 ADPETIELVADVAPSSIRESRKICIDASMSLYQFL---IAVRSEGNQLMSVDGEPTSHLM 354
AD ++ ++DV+ + S + +DA LY++L + SE S +GE ++L+
Sbjct: 4 ADLRSLAALSDVSFDDLGGS-VVAVDAHNWLYRYLTTTVKFTSESKYTTS-NGEEVANLI 61
Query: 355 GTFYRTIRLVEHGLKPIYVFDGKPPTLKSGELNKRMEKREDAQKALAKAQEQG 407
G + EH + P++VFDG LK E+ KR E+R+ + L A+E G
Sbjct: 62 GVVQGLPKFFEHDMTPVFVFDGAVTDLKDDEVEKRREQRQKYESELEAAREAG 114
Score = 44.3 bits (103), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 47/100 (47%), Gaps = 18/100 (18%)
Query: 232 FIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKIL----ENIDTKKYTVPEGWLYKE 287
+D IL+G D+ + I GIGPK A++ + EH + +L E+ID
Sbjct: 215 LVDAAILMGTDFNEGISGIGPKTAVKDLHEHGDLYTVLAARGEHIDHA----------DR 264
Query: 288 ARELFRHPEIAD----PETIELVADVAPSSIRESRKICID 323
R+LF P D P++IE D A + + + ++ D
Sbjct: 265 IRDLFLDPAATDDYEIPDSIEPDIDAARTFVTDQWEVDAD 304
Score = 43.9 bits (102), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 30/108 (27%), Positives = 48/108 (44%), Gaps = 21/108 (19%)
Query: 195 ADPETIEF--------------IDLCILLGCDYCDSIRGIGPKRAIELLYSFIDLCILLG 240
DPE ++F +D IL+G D+ + I GIGPK A++ L+ DL +L
Sbjct: 194 GDPELMDFAATLEHHDLTWEQLVDAAILMGTDFNEGISGIGPKTAVKDLHEHGDLYTVLA 253
Query: 241 C-----DYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGW 283
D+ D IR + A ++ + I +ID + V + W
Sbjct: 254 ARGEHIDHADRIRDLFLDPAA--TDDYEIPDSIEPDIDAARTFVTDQW 299
>gi|448431107|ref|ZP_21584935.1| flap endonuclease-1 [Halorubrum tebenquichense DSM 14210]
gi|445688254|gb|ELZ40519.1| flap endonuclease-1 [Halorubrum tebenquichense DSM 14210]
Length = 325
Score = 78.6 bits (192), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 44/130 (33%), Positives = 65/130 (50%), Gaps = 10/130 (7%)
Query: 60 KAPCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVL 119
+AP E EAQCA M G +ED DAL FG+ LR +T +L L L
Sbjct: 150 EAPAEGEAQCAHMAATGTADHAGSEDYDALLFGAPTTLRQLTSKGDPEL----MDLAATL 205
Query: 120 EGMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEG 179
++L + +D +L G D+ + +RGIGPK A+ ++EH + +L D + +P
Sbjct: 206 SDLDLDRQGLVDAAMLCGTDFNEGVRGIGPKTAVTAVREHGDLWGVL---DARDAEIPNA 262
Query: 180 WLYKEARELF 189
+ RELF
Sbjct: 263 ---EAIRELF 269
Score = 43.5 bits (101), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 33/62 (53%), Gaps = 6/62 (9%)
Query: 231 SFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGWLYKEARE 290
+D +L G D+ + +RGIGPK A+ ++EH + +L D + +P + RE
Sbjct: 214 GLVDAAMLCGTDFNEGVRGIGPKTAVTAVREHGDLWGVL---DARDAEIPNA---EAIRE 267
Query: 291 LF 292
LF
Sbjct: 268 LF 269
Score = 39.7 bits (91), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 37/78 (47%), Gaps = 2/78 (2%)
Query: 311 PSSIRESRKICIDASMSLYQFLIAVR--SEGNQLMSVDGEPTSHLMGTFYRTIRLVEHGL 368
P + E + +DA LY++L + + + DG ++L+G + EH L
Sbjct: 16 PFAEIEGSVVAVDAHNWLYRYLTTTVKWTADEKYTTADGVEVANLIGVVQGLPKFFEHDL 75
Query: 369 KPIYVFDGKPPTLKSGEL 386
P+ VFDG LK+ E+
Sbjct: 76 VPVMVFDGAVTDLKADEV 93
>gi|294660024|ref|XP_462477.2| DEHA2G21494p [Debaryomyces hansenii CBS767]
gi|199434412|emb|CAG90987.2| DEHA2G21494p [Debaryomyces hansenii CBS767]
Length = 1034
Score = 78.6 bits (192), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 47/118 (39%), Positives = 70/118 (59%), Gaps = 4/118 (3%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVLE 120
AP EAEAQCA ++K V T+D D FG + + ++M F++ K V+ + + +
Sbjct: 789 APMEAEAQCAELLKLNLVDGIITDDSDCFLFGGDKVYKNM-FNQ--KQYVECYIMNDINS 845
Query: 121 GMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENID-TKKYTVP 177
M LS E+ IDL +LLG DY + I+GIGP A+E++ E S++K + D K TVP
Sbjct: 846 RMGLSQEKLIDLALLLGSDYTEGIKGIGPVMAMEILAEFGSLKKFKQWFDENTKTTVP 903
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 35/78 (44%), Positives = 51/78 (65%), Gaps = 7/78 (8%)
Query: 318 RKICIDASMSLYQFLIAVRS-EGNQLMSVDGEPTSHLMGTFYRTIRLVEHGLKPIYVFDG 376
+K+ +DAS+ +YQFL AVR EGN + P +H++G F R +L+ G+ PI+VFDG
Sbjct: 25 KKLAVDASIWIYQFLKAVRDQEGNSM------PQAHIVGFFRRICKLLYFGIYPIFVFDG 78
Query: 377 KPPTLKSGELNKRMEKRE 394
P LK +N+R E+RE
Sbjct: 79 GAPALKRQTINQRRERRE 96
Score = 47.8 bits (112), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 23/50 (46%), Positives = 32/50 (64%), Gaps = 1/50 (2%)
Query: 232 FIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENID-TKKYTVP 280
IDL +LLG DY + I+GIGP A+E++ E S++K + D K TVP
Sbjct: 854 LIDLALLLGSDYTEGIKGIGPVMAMEILAEFGSLKKFKQWFDENTKTTVP 903
Score = 45.1 bits (105), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 45/96 (46%), Gaps = 4/96 (4%)
Query: 202 FIDLCILLGCDYCDSIRGIGPKRAIELLYSFIDLCILLGCDYCDSIRGIGPKRAIELIKE 261
IDL +LLG DY + I+GIGP A+E+L F L + ++ + P L
Sbjct: 854 LIDLALLLGSDYTEGIKGIGPVMAMEILAEFGSLKKFKQW-FDENTKTTVPPDKSGLTSI 912
Query: 262 HRSIEKILENIDTKKYTVPEGWLYKEARELFRHPEI 297
RS +L I + +PE + + ++ PE+
Sbjct: 913 KRS---LLNRIKNGTFFLPESFPDNVIFDAYKQPEV 945
>gi|448640877|ref|ZP_21677664.1| flap endonuclease-1 [Haloarcula sinaiiensis ATCC 33800]
gi|445761402|gb|EMA12650.1| flap endonuclease-1 [Haloarcula sinaiiensis ATCC 33800]
Length = 326
Score = 78.6 bits (192), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 50/149 (33%), Positives = 72/149 (48%), Gaps = 22/149 (14%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVLE 120
AP E E Q + M + G V TED DAL FG+ + LR +T +L LE
Sbjct: 151 APAEGEGQASVMARRGDVDYVGTEDYDALLFGAPMTLRQITSKGDPEL----MDFAATLE 206
Query: 121 GMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKIL----ENIDTKKYTV 176
+L+ E+ +D IL+G D+ + I GIGPK A++ + EH + +L E+ID
Sbjct: 207 HHDLTWEQLVDAAILMGTDFNEGISGIGPKTAVKDLHEHGDLYAVLAARGEHIDHA---- 262
Query: 177 PEGWLYKEARELFRHPEVAD----PETIE 201
R+LF P D P++IE
Sbjct: 263 ------DRIRDLFLDPAATDDYEIPDSIE 285
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 35/113 (30%), Positives = 59/113 (52%), Gaps = 5/113 (4%)
Query: 298 ADPETIELVADVAPSSIRESRKICIDASMSLYQFL---IAVRSEGNQLMSVDGEPTSHLM 354
AD ++ ++DV+ + S + +DA LY++L + SE S +GE ++L+
Sbjct: 4 ADLRSLAALSDVSFDDLGGS-VVAVDAHNWLYRYLTTTVKFTSESKYTTS-NGEEVANLI 61
Query: 355 GTFYRTIRLVEHGLKPIYVFDGKPPTLKSGELNKRMEKREDAQKALAKAQEQG 407
G + EH + P++VFDG LK E+ KR E+R+ + L A+E G
Sbjct: 62 GVVQGLPKFFEHDMTPVFVFDGAVTDLKDDEVEKRREQRQKYESELEAAREAG 114
Score = 44.3 bits (103), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 47/100 (47%), Gaps = 18/100 (18%)
Query: 232 FIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKIL----ENIDTKKYTVPEGWLYKE 287
+D IL+G D+ + I GIGPK A++ + EH + +L E+ID
Sbjct: 215 LVDAAILMGTDFNEGISGIGPKTAVKDLHEHGDLYAVLAARGEHIDHA----------DR 264
Query: 288 ARELFRHPEIAD----PETIELVADVAPSSIRESRKICID 323
R+LF P D P++IE D A + + + ++ D
Sbjct: 265 IRDLFLDPAATDDYEIPDSIEPDIDAARTFVTDQWEVDAD 304
Score = 43.5 bits (101), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 30/108 (27%), Positives = 48/108 (44%), Gaps = 21/108 (19%)
Query: 195 ADPETIEF--------------IDLCILLGCDYCDSIRGIGPKRAIELLYSFIDLCILLG 240
DPE ++F +D IL+G D+ + I GIGPK A++ L+ DL +L
Sbjct: 194 GDPELMDFAATLEHHDLTWEQLVDAAILMGTDFNEGISGIGPKTAVKDLHEHGDLYAVLA 253
Query: 241 C-----DYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGW 283
D+ D IR + A ++ + I +ID + V + W
Sbjct: 254 ARGEHIDHADRIRDLFLDPAA--TDDYEIPDSIEPDIDAARTFVTDQW 299
>gi|448546419|ref|ZP_21626583.1| flap endonuclease-1 [Haloferax sp. ATCC BAA-646]
gi|448548406|ref|ZP_21627673.1| flap endonuclease-1 [Haloferax sp. ATCC BAA-645]
gi|448557600|ref|ZP_21632789.1| flap endonuclease-1 [Haloferax sp. ATCC BAA-644]
gi|445702872|gb|ELZ54812.1| flap endonuclease-1 [Haloferax sp. ATCC BAA-646]
gi|445714157|gb|ELZ65924.1| flap endonuclease-1 [Haloferax sp. ATCC BAA-644]
gi|445714501|gb|ELZ66263.1| flap endonuclease-1 [Haloferax sp. ATCC BAA-645]
Length = 326
Score = 78.6 bits (192), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 44/135 (32%), Positives = 68/135 (50%), Gaps = 10/135 (7%)
Query: 60 KAPCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVL 119
+AP E EAQ + M + G +ED D L FG+ LR +T +L L+ L
Sbjct: 150 EAPAEGEAQASYMARKGDADYVGSEDYDTLLFGAPYTLRQLTSKGNPEL----MDLDATL 205
Query: 120 EGMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEG 179
+ ++HE+ +D+ +L G D+ + I GIGPK A++ + EH + +LE + T+P
Sbjct: 206 DKHGITHEQLVDIAMLCGTDFNEGITGIGPKTAVKAVTEHGDLWSVLE---ARGDTIPNA 262
Query: 180 WLYKEARELFRHPEV 194
RE F P V
Sbjct: 263 ---DRVREFFLDPPV 274
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 34/112 (30%), Positives = 60/112 (53%), Gaps = 3/112 (2%)
Query: 298 ADPETIELVADVAPSSIRESRKICIDASMSLYQFLIAV--RSEGNQLMSVDGEPTSHLMG 355
AD T+ +++V+ + S + +DA LY++L + + + +GE ++L+G
Sbjct: 4 ADLRTLAALSEVSFDEVAGS-VVAVDAHNWLYRYLTTTVKWTSSEKYTTSEGEEVANLVG 62
Query: 356 TFYRTIRLVEHGLKPIYVFDGKPPTLKSGELNKRMEKREDAQKALAKAQEQG 407
+ EH L P++VFDG +K E+ KR E+RE A+ L +A+E G
Sbjct: 63 IVQGLPKFFEHDLTPVFVFDGGVTEMKDDEVAKRREQREKAEARLEEAREAG 114
Score = 45.1 bits (105), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 34/66 (51%), Gaps = 6/66 (9%)
Query: 232 FIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGWLYKEAREL 291
+D+ +L G D+ + I GIGPK A++ + EH + +LE + T+P RE
Sbjct: 215 LVDIAMLCGTDFNEGITGIGPKTAVKAVTEHGDLWSVLE---ARGDTIPNA---DRVREF 268
Query: 292 FRHPEI 297
F P +
Sbjct: 269 FLDPPV 274
>gi|68059974|ref|XP_671969.1| hypothetical protein [Plasmodium berghei strain ANKA]
gi|56488629|emb|CAI03948.1| hypothetical protein PB301454.00.0 [Plasmodium berghei]
Length = 151
Score = 78.2 bits (191), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 42/112 (37%), Positives = 68/112 (60%), Gaps = 5/112 (4%)
Query: 64 EAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVLEGME 123
+AE +CA K ++D DAL FG+ L+R +T + R + + +++L +
Sbjct: 8 DAEKECAIQCSHEKD-IVVSDDTDALAFGAPNLIRFITNKKKRHI----INKDEILNELN 62
Query: 124 LSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYT 175
+++E+FID CIL GCDY I GIGP +A E+IK++++IE LE+ KY+
Sbjct: 63 INYEQFIDFCILSGCDYSAKIPGIGPIKAYEIIKKYKTIETFLESSAFDKYS 114
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/47 (53%), Positives = 33/47 (70%)
Query: 232 FIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYT 278
FID CIL GCDY I GIGP +A E+IK++++IE LE+ KY+
Sbjct: 68 FIDFCILSGCDYSAKIPGIGPIKAYEIIKKYKTIETFLESSAFDKYS 114
Score = 43.5 bits (101), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 29/50 (58%), Gaps = 3/50 (6%)
Query: 183 KEARELFRHPEVADPETI---EFIDLCILLGCDYCDSIRGIGPKRAIELL 229
K+ R + E+ + I +FID CIL GCDY I GIGP +A E++
Sbjct: 46 KKKRHIINKDEILNELNINYEQFIDFCILSGCDYSAKIPGIGPIKAYEII 95
>gi|307352874|ref|YP_003893925.1| flap structure-specific endonuclease [Methanoplanus petrolearius
DSM 11571]
gi|307156107|gb|ADN35487.1| flap structure-specific endonuclease [Methanoplanus petrolearius
DSM 11571]
Length = 333
Score = 78.2 bits (191), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 36/88 (40%), Positives = 54/88 (61%), Gaps = 1/88 (1%)
Query: 321 CIDASMSLYQFLIAVR-SEGNQLMSVDGEPTSHLMGTFYRTIRLVEHGLKPIYVFDGKPP 379
+D + +LYQFL +R +G LM +G TSHL G F+R +E+ +KP+++FDG PP
Sbjct: 26 AVDGNNALYQFLTTIRQPDGTPLMDREGRVTSHLSGIFFRITTFLENNIKPVFIFDGAPP 85
Query: 380 TLKSGELNKRMEKREDAQKALAKAQEQG 407
KS L +R E++ A+ A +A E G
Sbjct: 86 EFKSETLEQRRERKAVAETAYRQAVEVG 113
Score = 73.6 bits (179), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 39/115 (33%), Positives = 65/115 (56%), Gaps = 7/115 (6%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKL-------PVQEF 113
A E EAQ A M G V + ++D D+L FG+ L+R++T S RK+ +E
Sbjct: 150 AMSEGEAQAAYMAMNGDVRYSISQDYDSLLFGAPRLVRNLTVSRKRKVRGRVITVNPEEI 209
Query: 114 HLEKVLEGMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILEN 168
L +L+G ++ EE I++ IL+G D+ ++G+G K A++++K + E EN
Sbjct: 210 LLSDLLDGKGITREELIEIGILVGTDFNSGVKGVGAKTALKIVKSGKFYETFEEN 264
Score = 40.8 bits (94), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 31/50 (62%), Gaps = 3/50 (6%)
Query: 2 TLKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSSTTQGRLDSFF 51
+L WS D +G+V YLCG +F+EDR+ N + + +S Q LDS+F
Sbjct: 287 SLSWSHVDREGVVSYLCGRHDFSEDRV-NSVLERIGVKSG--QKTLDSWF 333
Score = 40.0 bits (92), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 21/49 (42%), Positives = 30/49 (61%), Gaps = 3/49 (6%)
Query: 409 LKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSTTTQGRLDSFF 457
L WS D +G+V YLCG +F+EDR+ N + + +S Q LDS+F
Sbjct: 288 LSWSHVDREGVVSYLCGRHDFSEDRV-NSVLERIGVKS--GQKTLDSWF 333
>gi|150402483|ref|YP_001329777.1| flap endonuclease-1 [Methanococcus maripaludis C7]
gi|150033513|gb|ABR65626.1| XPG I [Methanococcus maripaludis C7]
Length = 324
Score = 78.2 bits (191), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 42/136 (30%), Positives = 76/136 (55%), Gaps = 15/136 (11%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVLE 120
AP E EAQCA +VK+ + ++D D++ +G+ +++++T S ++ L+K L
Sbjct: 149 APSEGEAQCAELVKSNDAFCVISQDYDSILYGAENVVKNITSSNK---DIELIELQKTLS 205
Query: 121 GMELSHEEFIDLCILLGCDYC-DSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEG 179
+ +S + ID+ IL+G DY ++G GPK+AI+ +K+ + +EK + I+
Sbjct: 206 ELNVSLNQLIDVAILIGTDYNPGGLKGFGPKKAIDTVKKGQ-MEKYISEIEN-------- 256
Query: 180 WLYKEARELFRHPEVA 195
Y E R++F P V
Sbjct: 257 --YSEIRKIFDEPNVT 270
Score = 68.9 bits (167), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 44/127 (34%), Positives = 71/127 (55%), Gaps = 9/127 (7%)
Query: 317 SRKICIDASMSLYQFLIAVR-SEGNQLMSVDGEPTSHLMGTFYRTIRLVEHGLKPIYVFD 375
++ + IDA +YQFL ++R +G+ L + +GE TS G FY+TI ++E+ + PI+VFD
Sbjct: 21 NKTVAIDAMNVIYQFLSSIRLRDGSPLKNKNGEITSTYNGIFYKTIYMLENEMTPIWVFD 80
Query: 376 GKPPTLKSGELNKRMEKREDAQKALAKAQEQGKLKWSDPDEDGLVKYLCGDKNFAEDRIR 435
GK LK +R + R A + +A+EQ L + + KY NF + +
Sbjct: 81 GKSHDLKEKTKEERRKSRNGALDSYLEAKEQNNL-------EEMQKY-AKRANFLDKKTI 132
Query: 436 NGAKKLL 442
+ +KKLL
Sbjct: 133 DNSKKLL 139
Score = 41.6 bits (96), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 38/71 (53%), Gaps = 12/71 (16%)
Query: 229 LYSFIDLCILLGCDYC-DSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGWLYKE 287
L ID+ IL+G DY ++G GPK+AI+ +K+ + +EK + I+ Y E
Sbjct: 211 LNQLIDVAILIGTDYNPGGLKGFGPKKAIDTVKKGQ-MEKYISEIEN----------YSE 259
Query: 288 ARELFRHPEIA 298
R++F P +
Sbjct: 260 IRKIFDEPNVT 270
>gi|16082069|ref|NP_394495.1| flap endonuclease-1 [Thermoplasma acidophilum DSM 1728]
gi|28380022|sp|Q9HJD4.1|FEN_THEAC RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|10640350|emb|CAC12164.1| DNA repair protein RAD2 related protein [Thermoplasma acidophilum]
Length = 336
Score = 77.8 bits (190), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 41/93 (44%), Positives = 58/93 (62%), Gaps = 1/93 (1%)
Query: 317 SRKICIDASMSLYQFLIAVRS-EGNQLMSVDGEPTSHLMGTFYRTIRLVEHGLKPIYVFD 375
++ ID LYQ L VR +G LM G TSHL G FYRTI L+E+ ++P+YVFD
Sbjct: 21 NQTFSIDTYNILYQLLSNVRQYDGMPLMDSHGNVTSHLYGIFYRTINLLENRIRPVYVFD 80
Query: 376 GKPPTLKSGELNKRMEKREDAQKALAKAQEQGK 408
GKP LK+ +++R +E A+ L +A E+G+
Sbjct: 81 GKPSPLKNRTISERQMMKEKAKAELEEAIERGE 113
Score = 74.7 bits (182), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 44/145 (30%), Positives = 76/145 (52%), Gaps = 16/145 (11%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFH------ 114
AP E EAQ + M K V ++D D L FG+ +LR+ RK+P + +
Sbjct: 148 APSEGEAQASYMTKKN-VDGVISQDYDCLLFGARKILRNFAIYGRRKVPRKNIYKTVYPE 206
Query: 115 ---LEKVLEGMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDT 171
L++VL +++ ++ I + IL+G D+ + I+GIG K+A+ LIK+ I+ +L++I
Sbjct: 207 YIILDEVLSANQINQDQLIGIGILVGTDFNEGIKGIGAKKALALIKKEGDIKSVLKHIGK 266
Query: 172 KKYTVPEGWLYKEARELFRHPEVAD 196
+ E + F++P V D
Sbjct: 267 NIENL------DEIIDFFKNPPVVD 285
Score = 42.4 bits (98), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 30/48 (62%)
Query: 3 LKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSSTTQGRLDSF 50
K+ PD D + +LC + +F+ +RIR+ + L K ++TQ RLDSF
Sbjct: 288 FKFRKPDTDAIEHFLCDEHDFSRERIRDHLESLRKNDQASTQFRLDSF 335
Score = 42.0 bits (97), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 38/68 (55%), Gaps = 6/68 (8%)
Query: 232 FIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGWLYKEAREL 291
I + IL+G D+ + I+GIG K+A+ LIK+ I+ +L++I + E +
Sbjct: 224 LIGIGILVGTDFNEGIKGIGAKKALALIKKEGDIKSVLKHIGKNIENL------DEIIDF 277
Query: 292 FRHPEIAD 299
F++P + D
Sbjct: 278 FKNPPVVD 285
Score = 42.0 bits (97), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 29/48 (60%)
Query: 409 LKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSTTTQGRLDSF 456
K+ PD D + +LC + +F+ +RIR+ + L K +TQ RLDSF
Sbjct: 288 FKFRKPDTDAIEHFLCDEHDFSRERIRDHLESLRKNDQASTQFRLDSF 335
>gi|359483569|ref|XP_002269417.2| PREDICTED: exonuclease 1-like [Vitis vinifera]
Length = 658
Score = 77.8 bits (190), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 52/165 (31%), Positives = 86/165 (52%), Gaps = 4/165 (2%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFG-SNILLRHMTFSEARKLPVQEFHLEKVL 119
AP EA+AQ + + +V A TED D + FG I+ + F + + K L
Sbjct: 147 APYEADAQMTFLAVSQQVDAIITEDSDMIPFGCPRIIFKMDKFGQGVEFKYSMIQQNKEL 206
Query: 120 EGMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEG 179
+ + +++CIL GCDY S+ G+G K+A LIK+ +S +K+++++ +VP
Sbjct: 207 SFAGFTKQMILEMCILSGCDYLQSLPGMGLKKAHALIKKFKSYDKVIKHLRYATGSVPPL 266
Query: 180 W--LYKEARELFRHPEVADPETIEFIDLCILLGCDYCDSIRGIGP 222
+ +K+A F+H V DP TIE I +L + D + +GP
Sbjct: 267 YEESFKKAMLTFQHQRVYDP-TIEDIVHLSVLSDNVGDDLDFLGP 310
Score = 52.4 bits (124), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 51/81 (62%), Gaps = 3/81 (3%)
Query: 232 FIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGW--LYKEAR 289
+++CIL GCDY S+ G+G K+A LIK+ +S +K+++++ +VP + +K+A
Sbjct: 216 ILEMCILSGCDYLQSLPGMGLKKAHALIKKFKSYDKVIKHLRYATGSVPPLYEESFKKAM 275
Query: 290 ELFRHPEIADPETIELVADVA 310
F+H + DP TIE + ++
Sbjct: 276 LTFQHQRVYDP-TIEDIVHLS 295
>gi|292656986|ref|YP_003536883.1| DNA repair flap endonuclease Fen1 [Haloferax volcanii DS2]
gi|448293584|ref|ZP_21483689.1| flap endonuclease-1 [Haloferax volcanii DS2]
gi|291370541|gb|ADE02768.1| DNA repair flap endonuclease Fen1 [Haloferax volcanii DS2]
gi|445570445|gb|ELY25008.1| flap endonuclease-1 [Haloferax volcanii DS2]
Length = 326
Score = 77.8 bits (190), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 42/135 (31%), Positives = 70/135 (51%), Gaps = 10/135 (7%)
Query: 60 KAPCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVL 119
+AP E EAQ + M + G +ED D L FG+ LR +T +L L+ L
Sbjct: 150 EAPAEGEAQASYMARKGDADYVGSEDYDTLLFGAPYTLRQLTSKGNPEL----MDLDATL 205
Query: 120 EGMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEG 179
+ ++++E+ +D+ +L G D+ + I GIGPK A++++ EH + +LE + ++P
Sbjct: 206 DKHDITYEQLVDIAMLCGTDFNEGITGIGPKTAVKVVTEHGDLWSVLE---ARGASIPNA 262
Query: 180 WLYKEARELFRHPEV 194
RE F P V
Sbjct: 263 ---DRVREFFLDPPV 274
Score = 48.9 bits (115), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 51/99 (51%), Gaps = 3/99 (3%)
Query: 298 ADPETIELVADVAPSSIRESRKICIDASMSLYQFLIAV--RSEGNQLMSVDGEPTSHLMG 355
AD T+ +++V+ + S + +DA LY++L + + +GE ++L+G
Sbjct: 4 ADLRTLAALSEVSFDEVSGS-VVAVDAHNWLYRYLTTTVKWTSSETYTTSEGEEVANLVG 62
Query: 356 TFYRTIRLVEHGLKPIYVFDGKPPTLKSGELNKRMEKRE 394
+ EH L P++VFDG +K E+ KR E+RE
Sbjct: 63 IVQGIPKFFEHDLTPVFVFDGGVTEMKDDEVAKRREQRE 101
Score = 45.4 bits (106), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 35/66 (53%), Gaps = 6/66 (9%)
Query: 232 FIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGWLYKEAREL 291
+D+ +L G D+ + I GIGPK A++++ EH + +LE + ++P RE
Sbjct: 215 LVDIAMLCGTDFNEGITGIGPKTAVKVVTEHGDLWSVLE---ARGASIPNA---DRVREF 268
Query: 292 FRHPEI 297
F P +
Sbjct: 269 FLDPPV 274
>gi|448565137|ref|ZP_21636108.1| flap endonuclease-1 [Haloferax prahovense DSM 18310]
gi|445715796|gb|ELZ67549.1| flap endonuclease-1 [Haloferax prahovense DSM 18310]
Length = 326
Score = 77.8 bits (190), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 43/135 (31%), Positives = 70/135 (51%), Gaps = 10/135 (7%)
Query: 60 KAPCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVL 119
+AP E EAQ + M + G +ED D L FG+ LR +T +L L+ L
Sbjct: 150 EAPAEGEAQASYMARKGDADYVGSEDYDPLLFGAPYTLRQLTSKGDPEL----MDLDATL 205
Query: 120 EGMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEG 179
+ ++++E+ +D+ +L G D+ + I GIGPK A++++ EH + +LE + T+P
Sbjct: 206 DKHDITYEQLVDIAMLCGTDFNEGITGIGPKTAVKVVTEHGDLWSVLE---ARGDTIPNA 262
Query: 180 WLYKEARELFRHPEV 194
RE F P V
Sbjct: 263 ---DRVREFFLDPPV 274
Score = 56.2 bits (134), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 36/112 (32%), Positives = 62/112 (55%), Gaps = 3/112 (2%)
Query: 298 ADPETIELVADVAPSSIRESRKICIDASMSLYQFLIA-VRSEGNQLMSVD-GEPTSHLMG 355
AD T+ +++V+ + S + +DA LY++L V+ ++ + D GE ++L+G
Sbjct: 4 ADLRTLAALSEVSFDEVAGS-VVAVDAHNWLYRYLTTTVKWTSSEKYTTDAGEEVANLVG 62
Query: 356 TFYRTIRLVEHGLKPIYVFDGKPPTLKSGELNKRMEKREDAQKALAKAQEQG 407
+ EH L P++VFDG +K E+ KR E+RE A+ L +A+E G
Sbjct: 63 IVQGLPKFFEHDLTPVFVFDGGVTEMKDDEVAKRREQREKAEARLEEAREAG 114
Score = 45.8 bits (107), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 35/66 (53%), Gaps = 6/66 (9%)
Query: 232 FIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGWLYKEAREL 291
+D+ +L G D+ + I GIGPK A++++ EH + +LE + T+P RE
Sbjct: 215 LVDIAMLCGTDFNEGITGIGPKTAVKVVTEHGDLWSVLE---ARGDTIPNA---DRVREF 268
Query: 292 FRHPEI 297
F P +
Sbjct: 269 FLDPPV 274
>gi|48477300|ref|YP_023006.1| flap endonuclease-1 [Picrophilus torridus DSM 9790]
gi|73919351|sp|Q6L2I9.1|FEN_PICTO RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|48429948|gb|AAT42813.1| RAD-2/FEN-1 exonuclease [Picrophilus torridus DSM 9790]
Length = 338
Score = 77.8 bits (190), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 48/125 (38%), Positives = 69/125 (55%), Gaps = 9/125 (7%)
Query: 320 ICIDASMSLYQFLIAVRSE-GNQLMSVDGEPTSHLMGTFYRTIRLVEHGLKPIYVFDGKP 378
+ +DA +YQFL ++R + G L +G TSHL G FYRT L+E+ +KP+YVFDGKP
Sbjct: 24 VSVDAYNIIYQFLSSIRGDDGEPLKDSNGNITSHLSGIFYRTSNLLENNIKPVYVFDGKP 83
Query: 379 PTLKSGELNKRMEKREDAQKALAKAQEQGKLKWSDPDEDGLVKYLCGDKNFAEDRIRNGA 438
LKS L +R +E K + K +E ++D ++ L N+ D I N +
Sbjct: 84 FHLKSETLRERSLIKE---KNIMKLEEAIA-----SNDDAKIRSLSSRINYITDDIVNES 135
Query: 439 KKLLK 443
K LL
Sbjct: 136 KTLLN 140
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 47/168 (27%), Positives = 77/168 (45%), Gaps = 24/168 (14%)
Query: 9 DEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSSTTQGRLDSFFTIRREEKRKAPCEAEAQ 68
++D ++ L N+ D I N +K LL + +AP E EAQ
Sbjct: 112 NDDAKIRSLSSRINYITDDIVNESKTLL---------------NLMGLPYVQAPSEGEAQ 156
Query: 69 CAAMVKAGKVYATATEDMDALTFGSNILLRHMTF-------SEARKLPVQE--FHLEKVL 119
+ M G V A ++D D L FG+ +LR+ T +R + V L + L
Sbjct: 157 ASYMTLKGDVNAVVSQDYDCLLFGAKRILRNFTVYGRRRIAGTSRTINVNPEIIDLNENL 216
Query: 120 EGMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILE 167
+ +S E+ I + IL G D+ ++GIG K A+ LIK++ I +++
Sbjct: 217 SNLGISREQLIYIGILTGTDFNPGVKGIGAKTALSLIKKYNDIYSVIK 264
Score = 44.7 bits (104), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 30/49 (61%)
Query: 3 LKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSSTTQGRLDSFF 51
+K+++PD DG++ +LCG NF+E R+ +K+ + Q LD FF
Sbjct: 290 IKFNEPDFDGIIDFLCGKHNFSESRVNETLEKISRNYKKDHQSSLDRFF 338
Score = 44.7 bits (104), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 31/50 (62%)
Query: 408 KLKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSTTTQGRLDSFF 457
++K+++PD DG++ +LCG NF+E R+ +K+ + Q LD FF
Sbjct: 289 EIKFNEPDFDGIIDFLCGKHNFSESRVNETLEKISRNYKKDHQSSLDRFF 338
>gi|409076423|gb|EKM76795.1| hypothetical protein AGABI1DRAFT_62861 [Agaricus bisporus var.
burnettii JB137-S8]
Length = 575
Score = 77.8 bits (190), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 51/156 (32%), Positives = 81/156 (51%), Gaps = 12/156 (7%)
Query: 64 EAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVLEGME 123
E E +++V G +ED D L +G+ I+ R+ T + P+ H V E ++
Sbjct: 385 EGEGVASSLVLQGMADYVVSEDTDVLVYGAPIV-RNFT---SHGNPLTVIHGNDVREALD 440
Query: 124 LSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVP-EGWL- 181
LS++ ID ILLG D+ IR +GP RA++LIKE+ +IE IL + + T+P E ++
Sbjct: 441 LSNDACIDFAILLGTDFSQRIRNVGPIRALKLIKEYETIENILNSQTKHQPTIPHEEYMA 500
Query: 182 -YKEARELFRHPEVADPETIEFIDLCIL-LGCDYCD 215
+ AR +F P P + L ++ G D D
Sbjct: 501 QVESARAIFSSP----PPIPSQLRLAVMSTGTDLID 532
Score = 55.1 bits (131), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 28/66 (42%), Positives = 41/66 (62%), Gaps = 3/66 (4%)
Query: 233 IDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVP-EGWL--YKEAR 289
ID ILLG D+ IR +GP RA++LIKE+ +IE IL + + T+P E ++ + AR
Sbjct: 447 IDFAILLGTDFSQRIRNVGPIRALKLIKEYETIENILNSQTKHQPTIPHEEYMAQVESAR 506
Query: 290 ELFRHP 295
+F P
Sbjct: 507 AIFSSP 512
>gi|12323539|gb|AAG51751.1|AC068667_30 exonuclease, putative; 92014-93872 [Arabidopsis thaliana]
Length = 317
Score = 77.8 bits (190), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 48/149 (32%), Positives = 76/149 (51%), Gaps = 3/149 (2%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFG-SNILLRHMTFSEARKLPVQEFHLEKVL 119
AP EA+AQ A + +V A TED D + FG I+ + F + + K L
Sbjct: 147 APYEADAQMAFLAITKQVDAIITEDSDLIPFGCLRIIFKMDKFGHGVEFQASKLPKNKDL 206
Query: 120 EGMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEG 179
S + +++CIL GCDY S+ G+G KRA LI + +S +++++++ +VP
Sbjct: 207 SLSGFSSQMLLEMCILSGCDYLQSLPGMGLKRAHALITKFKSYDRVIKHLKYSTVSVPPL 266
Query: 180 W--LYKEARELFRHPEVADPETIEFIDLC 206
+ +K A F+H V DP + I LC
Sbjct: 267 YEESFKRALLTFKHQRVYDPNAEDIIHLC 295
Score = 52.0 bits (123), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 46/77 (59%), Gaps = 2/77 (2%)
Query: 232 FIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGW--LYKEAR 289
+++CIL GCDY S+ G+G KRA LI + +S +++++++ +VP + +K A
Sbjct: 216 LLEMCILSGCDYLQSLPGMGLKRAHALITKFKSYDRVIKHLKYSTVSVPPLYEESFKRAL 275
Query: 290 ELFRHPEIADPETIELV 306
F+H + DP +++
Sbjct: 276 LTFKHQRVYDPNAEDII 292
Score = 40.4 bits (93), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 25/61 (40%), Positives = 33/61 (54%), Gaps = 4/61 (6%)
Query: 347 GEPTS-HLMGTFYRTIRLVEHGLKPIYVFDGKPPTLKSGELNKRMEKREDAQKALAKAQE 405
G PT H+ +R L HG+KPI VFDG P +K + NKR R++ LA+A E
Sbjct: 49 GLPTKRHIQYCMHRVNLLRHHGVKPIMVFDGGPLPMKLEQENKRARSRKE---NLARALE 105
Query: 406 Q 406
Sbjct: 106 H 106
>gi|149237300|ref|XP_001524527.1| conserved hypothetical protein [Lodderomyces elongisporus NRRL
YB-4239]
gi|146452062|gb|EDK46318.1| conserved hypothetical protein [Lodderomyces elongisporus NRRL
YB-4239]
Length = 1129
Score = 77.8 bits (190), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 53/184 (28%), Positives = 89/184 (48%), Gaps = 33/184 (17%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVLE 120
AP EAEAQCA ++K G V T+D D FG + + ++M F++ K V+ + + +
Sbjct: 885 APMEAEAQCAELLKIGLVDGIVTDDSDCFLFGGDKVYKNM-FNQ--KQFVECYFKDDIAT 941
Query: 121 GMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEK---------------- 164
+ LS + I+L +LLG DY + I+G+GP A+E++ E S+ K
Sbjct: 942 KIGLSQDNLIELALLLGSDYTEGIKGVGPVLAMEILAEFGSLNKFKEWFDRHTKTAEVKS 1001
Query: 165 --------ILENIDTKKYTVPEGWLYKEARELFRHPEVADPETIEFIDLCILLGCDYCDS 216
+L + + K +P+ + + E ++ PEV DP+ +F+ G D
Sbjct: 1002 NLTSLEKNLLSKVKSGKLYLPDNFPDRIVFEAYKRPEV-DPDKTDFV-----WGVPNLDQ 1055
Query: 217 IRGI 220
IR
Sbjct: 1056 IRSF 1059
Score = 68.6 bits (166), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 42/93 (45%), Positives = 57/93 (61%), Gaps = 15/93 (16%)
Query: 318 RKICIDASMSLYQFLIAVRS-EGNQLMSVDGEPTSHLMGTFYRTIRLVEHGLKPIYVFDG 376
+K+ +DAS+ +YQFL AVR EGN L S SH++G F R +L+ G++PI+VFDG
Sbjct: 25 KKLAVDASIWIYQFLKAVRDKEGNALQS------SHIVGFFRRICKLLFFGIRPIFVFDG 78
Query: 377 KPPTLKSGEL----NKRMEK----REDAQKALA 401
P LK + N+R +K RE AQK LA
Sbjct: 79 GVPVLKKQTIAERKNRRQQKAESTRETAQKLLA 111
Score = 44.3 bits (103), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 26/103 (25%), Positives = 48/103 (46%), Gaps = 25/103 (24%)
Query: 231 SFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEK----------------------- 267
+ I+L +LLG DY + I+G+GP A+E++ E S+ K
Sbjct: 949 NLIELALLLGSDYTEGIKGVGPVLAMEILAEFGSLNKFKEWFDRHTKTAEVKSNLTSLEK 1008
Query: 268 -ILENIDTKKYTVPEGWLYKEARELFRHPEIADPETIELVADV 309
+L + + K +P+ + + E ++ PE+ DP+ + V V
Sbjct: 1009 NLLSKVKSGKLYLPDNFPDRIVFEAYKRPEV-DPDKTDFVWGV 1050
>gi|384498961|gb|EIE89452.1| hypothetical protein RO3G_14163 [Rhizopus delemar RA 99-880]
Length = 118
Score = 77.8 bits (190), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 37/65 (56%), Positives = 48/65 (73%), Gaps = 3/65 (4%)
Query: 60 KAPCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVL 119
+AP EAEAQCA + K GKV+A A+EDMD L F + ILLRH+TFS +R + E HL+K+L
Sbjct: 47 EAPSEAEAQCAELAKEGKVFAAASEDMDTLVFKTPILLRHLTFSGSR---IHEIHLDKLL 103
Query: 120 EGMEL 124
G+ L
Sbjct: 104 NGLGL 108
>gi|448583086|ref|ZP_21646555.1| flap endonuclease-1 [Haloferax gibbonsii ATCC 33959]
gi|445730043|gb|ELZ81635.1| flap endonuclease-1 [Haloferax gibbonsii ATCC 33959]
Length = 326
Score = 77.8 bits (190), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 43/135 (31%), Positives = 70/135 (51%), Gaps = 10/135 (7%)
Query: 60 KAPCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVL 119
+AP E EAQ + M + G +ED D L FG+ LR +T +L L+ L
Sbjct: 150 EAPAEGEAQASYMARKGDADYVGSEDYDTLLFGAPYTLRQLTSKGDPEL----MDLDATL 205
Query: 120 EGMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEG 179
+ +++ E+ +D+ +L G D+ + I GIGPK A++++KEH + +LE + ++P
Sbjct: 206 DKHDITWEQLVDIAMLCGTDFNEGITGIGPKTAVKVVKEHGDLWSVLE---ARGDSIPNA 262
Query: 180 WLYKEARELFRHPEV 194
RE F P V
Sbjct: 263 ---DRVREFFLDPPV 274
Score = 55.1 bits (131), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 33/112 (29%), Positives = 60/112 (53%), Gaps = 3/112 (2%)
Query: 298 ADPETIELVADVAPSSIRESRKICIDASMSLYQFLIAV--RSEGNQLMSVDGEPTSHLMG 355
AD T+ +++V+ + S + +DA LY++L + + + +G+ ++L+G
Sbjct: 4 ADLRTLAALSEVSFDEVTGS-VVAVDAHNWLYRYLTTTVKWTSSEKYTTSEGKEVANLVG 62
Query: 356 TFYRTIRLVEHGLKPIYVFDGKPPTLKSGELNKRMEKREDAQKALAKAQEQG 407
+ EH L P++VFDG +K E+ KR E+RE A++ L A+E G
Sbjct: 63 IVQGLPKFFEHDLTPVFVFDGGVTEMKDDEVAKRREQREKAEERLEAAREAG 114
Score = 46.6 bits (109), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 36/66 (54%), Gaps = 6/66 (9%)
Query: 232 FIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGWLYKEAREL 291
+D+ +L G D+ + I GIGPK A++++KEH + +LE + ++P RE
Sbjct: 215 LVDIAMLCGTDFNEGITGIGPKTAVKVVKEHGDLWSVLE---ARGDSIPNA---DRVREF 268
Query: 292 FRHPEI 297
F P +
Sbjct: 269 FLDPPV 274
>gi|399576495|ref|ZP_10770250.1| flap endonuclease-1 [Halogranum salarium B-1]
gi|399237939|gb|EJN58868.1| flap endonuclease-1 [Halogranum salarium B-1]
Length = 326
Score = 77.8 bits (190), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 39/111 (35%), Positives = 62/111 (55%), Gaps = 4/111 (3%)
Query: 60 KAPCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVL 119
+AP E EAQ + M + G +ED D L FG+ LR +T +L L+ L
Sbjct: 150 EAPAEGEAQASYMARRGDADYVGSEDYDTLLFGAPFTLRQLTSKGDPEL----MDLDATL 205
Query: 120 EGMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENID 170
++S+E+ +D+ IL+G D+ I+GIGPK A++ +KEH + +L+ D
Sbjct: 206 AKHDISYEQLVDIAILVGTDFNPGIKGIGPKTALKAVKEHGDLWGVLDARD 256
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 50/90 (55%), Gaps = 2/90 (2%)
Query: 320 ICIDASMSLYQFLIAV--RSEGNQLMSVDGEPTSHLMGTFYRTIRLVEHGLKPIYVFDGK 377
+ +DA LY++L + + + DG+ ++L+G + EH L PI+VFDG
Sbjct: 25 VAVDAHNWLYRYLTTTVKWTSDAKYTTSDGDEVANLVGLVQGLPKFFEHDLTPIFVFDGG 84
Query: 378 PPTLKSGELNKRMEKREDAQKALAKAQEQG 407
LK E+ R E++E AQ+ L +A+E+G
Sbjct: 85 VTELKDAEVEARREQKEKAQERLEEARERG 114
Score = 44.7 bits (104), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 28/42 (66%)
Query: 232 FIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENID 273
+D+ IL+G D+ I+GIGPK A++ +KEH + +L+ D
Sbjct: 215 LVDIAILVGTDFNPGIKGIGPKTALKAVKEHGDLWGVLDARD 256
>gi|355570852|ref|ZP_09042122.1| Flap structure-specific endonuclease [Methanolinea tarda NOBI-1]
gi|354826134|gb|EHF10350.1| Flap structure-specific endonuclease [Methanolinea tarda NOBI-1]
Length = 333
Score = 77.8 bits (190), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 39/107 (36%), Positives = 61/107 (57%), Gaps = 9/107 (8%)
Query: 60 KAPCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARK--------LPVQ 111
+AP E EAQ A MV G ++D D L FG+ +L+R++T S RK +P +
Sbjct: 149 QAPSEGEAQAAYMVMRGDARYVVSQDYDTLLFGAPVLVRNLTVSGKRKVRGRTLAIMP-E 207
Query: 112 EFHLEKVLEGMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKE 158
L VL G+E+S E+ I + +L+G D+ IRG+G K A+ +++
Sbjct: 208 RIVLSSVLTGLEISREDLIRVGLLVGTDFNPGIRGVGAKTALRMVRN 254
Score = 66.2 bits (160), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 51/88 (57%), Gaps = 1/88 (1%)
Query: 321 CIDASMSLYQFLIAVR-SEGNQLMSVDGEPTSHLMGTFYRTIRLVEHGLKPIYVFDGKPP 379
+DA +LYQFL +R +G LM G TSHL G +RT ++E G++ ++++DG PP
Sbjct: 26 AVDAHNALYQFLSIIRQPDGTPLMDQRGRVTSHLSGILFRTANMLEKGIRTVWIYDGTPP 85
Query: 380 TLKSGELNKRMEKREDAQKALAKAQEQG 407
+ K + +R RE A + +A +G
Sbjct: 86 SFKQDTVAERRAVREKAGEKWKEALLRG 113
>gi|154151645|ref|YP_001405263.1| flap endonuclease-1 [Methanoregula boonei 6A8]
gi|166973700|sp|A7IA59.1|FEN_METB6 RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|154000197|gb|ABS56620.1| XPG I [Methanoregula boonei 6A8]
Length = 333
Score = 77.8 bits (190), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 37/88 (42%), Positives = 55/88 (62%), Gaps = 1/88 (1%)
Query: 321 CIDASMSLYQFLIAVR-SEGNQLMSVDGEPTSHLMGTFYRTIRLVEHGLKPIYVFDGKPP 379
+DA+ +LYQFL +R +G LM G TSHL G +R + +E G+KP++VFDGKPP
Sbjct: 26 AVDANNTLYQFLTIIRQPDGTPLMDAKGRVTSHLSGILFRMVNFLEKGIKPVFVFDGKPP 85
Query: 380 TLKSGELNKRMEKREDAQKALAKAQEQG 407
LK +R + R++A + +A E+G
Sbjct: 86 ELKQETNAERKKLRDEAGEKYKEAVERG 113
Score = 75.5 bits (184), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 38/115 (33%), Positives = 65/115 (56%), Gaps = 7/115 (6%)
Query: 60 KAPCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKL-------PVQE 112
+AP E EAQ A MV+ G ++D D L FG+ +L+R++T S RK+ +
Sbjct: 149 QAPSEGEAQAAFMVQRGDARFAVSQDYDTLLFGAPLLMRNLTVSGKRKIRGRAVTVNPER 208
Query: 113 FHLEKVLEGMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILE 167
L +VL G+ L+ E+ +++ IL+G D+ G+G K A++++K +K+ E
Sbjct: 209 LVLSEVLSGLSLTREQLVEVGILVGTDFNPGAAGVGAKTALKIVKSGGFAQKLAE 263
>gi|118596628|dbj|BAF37974.1| flap endonuclease-1 [Thermoplasma sp. P61]
Length = 328
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 41/93 (44%), Positives = 58/93 (62%), Gaps = 1/93 (1%)
Query: 317 SRKICIDASMSLYQFLIAVRS-EGNQLMSVDGEPTSHLMGTFYRTIRLVEHGLKPIYVFD 375
++ ID LYQ L VR +G LM G TSHL G FYRTI L+E+ ++P+YVFD
Sbjct: 21 NQTFSIDTYNILYQLLSNVRQYDGMPLMDSHGNVTSHLYGIFYRTINLLENKIRPVYVFD 80
Query: 376 GKPPTLKSGELNKRMEKREDAQKALAKAQEQGK 408
GKP LK+ +++R +E A+ L +A E+G+
Sbjct: 81 GKPSPLKNRTISERQLMKEKAKVELEEAIERGE 113
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 44/145 (30%), Positives = 74/145 (51%), Gaps = 16/145 (11%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFH------ 114
AP E EAQ + M K V ++D D L FG+ +LR+ RK+P + +
Sbjct: 148 APSEGEAQASYMTKKN-VDGVISQDYDCLLFGARKILRNFAIYGRRKVPRKNIYKTVYPE 206
Query: 115 ---LEKVLEGMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDT 171
L++VL +++ ++ I + IL+G D+ + I+GIG K+A+ LIK+ I+ +L I
Sbjct: 207 YIILDEVLSANQINQDQLIGIGILVGTDFNEGIKGIGAKKALALIKKEGDIKAVLRRIGK 266
Query: 172 KKYTVPEGWLYKEARELFRHPEVAD 196
+ E + F++P V D
Sbjct: 267 NIENL------DEIIDFFKNPPVVD 285
>gi|261349732|ref|ZP_05975149.1| DNA repair protein RAD2 [Methanobrevibacter smithii DSM 2374]
gi|288861687|gb|EFC93985.1| DNA repair protein RAD2 [Methanobrevibacter smithii DSM 2374]
Length = 327
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 43/102 (42%), Positives = 60/102 (58%), Gaps = 5/102 (4%)
Query: 316 ESRKICIDASMSLYQFLIAVRS-EGNQLMSVDGEPTSHLMGTFYRTIRLVEHGLKPIYVF 374
+ R I IDA +LYQFL +R +G L +G TSHL G YR ++E +KPIYVF
Sbjct: 20 KGRAISIDAFNTLYQFLSTIRQRDGRPLSDSNGNITSHLSGILYRNSSMIEKDIKPIYVF 79
Query: 375 DGKPPTLKSGELNKRMEKREDAQK----ALAKAQEQGKLKWS 412
DG P LK +++R + RE+++K ALAK Q K++
Sbjct: 80 DGTPSYLKQETIDQRRQTREESEKKWKEALAKQDTQEARKYA 121
Score = 72.4 bits (176), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 66/98 (67%), Gaps = 1/98 (1%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVLE 120
A E EAQ A +V+ G +A A++D D L FG+ ++R++ + + ++ ++L++VL+
Sbjct: 149 AYGEGEAQAAYLVENGDAWAVASQDYDCLLFGAKRVVRNLAIN-SNLGDLEYYNLKRVLD 207
Query: 121 GMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKE 158
++++ E+ ID+ IL+G D+ + ++G+G K A++L K+
Sbjct: 208 ELDINREQLIDMGILIGTDFSEGLKGVGAKTALKLAKK 245
>gi|148642785|ref|YP_001273298.1| flap endonuclease-1 [Methanobrevibacter smithii ATCC 35061]
gi|166973703|sp|A5UL52.1|FEN_METS3 RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|148551802|gb|ABQ86930.1| DNA repair flap structure-specific 5'-3' endonuclease
[Methanobrevibacter smithii ATCC 35061]
Length = 327
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 43/102 (42%), Positives = 60/102 (58%), Gaps = 5/102 (4%)
Query: 316 ESRKICIDASMSLYQFLIAVRS-EGNQLMSVDGEPTSHLMGTFYRTIRLVEHGLKPIYVF 374
+ R I IDA +LYQFL +R +G L +G TSHL G YR ++E +KPIYVF
Sbjct: 20 KGRAISIDAFNTLYQFLSTIRQRDGRPLSDSNGNITSHLSGILYRNSSMIEKDIKPIYVF 79
Query: 375 DGKPPTLKSGELNKRMEKREDAQK----ALAKAQEQGKLKWS 412
DG P LK +++R + RE+++K ALAK Q K++
Sbjct: 80 DGTPSYLKQETIDQRRQTREESEKKWKEALAKQDTQEARKYA 121
Score = 72.4 bits (176), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 38/134 (28%), Positives = 79/134 (58%), Gaps = 7/134 (5%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVLE 120
A E EAQ A +V+ G +A A++D D L FG+ ++R++ + + ++ ++L++VL+
Sbjct: 149 AYGEGEAQAAYLVENGDAWAVASQDYDCLLFGAKRVVRNLAIN-SNLGDLEYYNLKRVLD 207
Query: 121 GMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGW 180
++++ E+ ID+ IL+G D+ + ++G+G K A++L K+ K+ + + + +
Sbjct: 208 ELDINREQLIDMGILIGTDFSEGLKGVGAKTALKLAKKGELENKLAKLQEESSHDIS--- 264
Query: 181 LYKEARELFRHPEV 194
E RE+F + V
Sbjct: 265 ---EVREIFLNHNV 275
>gi|82704983|ref|XP_726779.1| structure-specific endonuclease [Plasmodium yoelii yoelii 17XNL]
gi|23482332|gb|EAA18344.1| structure-specific endonuclease of the XPG/RAD2 family [Plasmodium
yoelii yoelii]
Length = 390
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 42/112 (37%), Positives = 69/112 (61%), Gaps = 5/112 (4%)
Query: 64 EAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVLEGME 123
+AE +CA K ++D DAL FG+ L+R +T + R + + +++L ++
Sbjct: 247 DAEKECAIQCSHEKD-IVVSDDTDALAFGAPNLIRFITNKKKRHI----INKDEILNELD 301
Query: 124 LSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYT 175
+++E+FID CIL GCDY I GIGP +A E+IK++++IE LE+ KY+
Sbjct: 302 INYEQFIDFCILSGCDYSAKIPGIGPIKAYEIIKKYKTIETFLESSAFDKYS 353
Score = 53.5 bits (127), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/47 (53%), Positives = 33/47 (70%)
Query: 232 FIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYT 278
FID CIL GCDY I GIGP +A E+IK++++IE LE+ KY+
Sbjct: 307 FIDFCILSGCDYSAKIPGIGPIKAYEIIKKYKTIETFLESSAFDKYS 353
Score = 43.1 bits (100), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 29/50 (58%), Gaps = 3/50 (6%)
Query: 183 KEARELFRHPEVADPETI---EFIDLCILLGCDYCDSIRGIGPKRAIELL 229
K+ R + E+ + I +FID CIL GCDY I GIGP +A E++
Sbjct: 285 KKKRHIINKDEILNELDINYEQFIDFCILSGCDYSAKIPGIGPIKAYEII 334
>gi|384483460|gb|EIE75640.1| hypothetical protein RO3G_00344 [Rhizopus delemar RA 99-880]
Length = 515
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 55/174 (31%), Positives = 87/174 (50%), Gaps = 11/174 (6%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFG-SNILLRHMTFSEARKLPVQEFHLEKVL 119
AP EA+AQ A ++K A TED D L FG S ++ + + + ++ ++ + KV+
Sbjct: 147 APYEADAQLAYLLKNNYAQAAITEDSDLLAFGCSTVIFKLNRYGDCMRIHFED--ISKVI 204
Query: 120 EGMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEG 179
+ S +C+L GCDY S++GIG K A LIK+H +IEK+++ + ++
Sbjct: 205 DIKPFSVTTLRHICMLSGCDYLPSLKGIGLKTAETLIKKHLTIEKVMKALRFRQNIARYQ 264
Query: 180 WLYKEARELFRHPEVADPETIEFIDLCIL--------LGCDYCDSIRGIGPKRA 225
++ A F H V D +T +F+ L L L CD GPK A
Sbjct: 265 QDFERAETAFLHQFVYDVKTRQFVRLNELPKGFKQEYLPSLGCDPKEFTGPKDA 318
Score = 48.1 bits (113), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 42/72 (58%)
Query: 235 LCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGWLYKEARELFRH 294
+C+L GCDY S++GIG K A LIK+H +IEK+++ + ++ ++ A F H
Sbjct: 217 ICMLSGCDYLPSLKGIGLKTAETLIKKHLTIEKVMKALRFRQNIARYQQDFERAETAFLH 276
Query: 295 PEIADPETIELV 306
+ D +T + V
Sbjct: 277 QFVYDVKTRQFV 288
>gi|448602383|ref|ZP_21656439.1| flap endonuclease-1 [Haloferax sulfurifontis ATCC BAA-897]
gi|445747898|gb|ELZ99352.1| flap endonuclease-1 [Haloferax sulfurifontis ATCC BAA-897]
Length = 326
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 43/135 (31%), Positives = 69/135 (51%), Gaps = 10/135 (7%)
Query: 60 KAPCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVL 119
+AP E EAQ + M + G +ED D L FG+ LR +T +L L+ L
Sbjct: 150 EAPAEGEAQASYMARKGDADYVGSEDYDTLLFGAPYTLRQLTSKGNPEL----MDLDATL 205
Query: 120 EGMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEG 179
++++E+ +D+ +L G D+ + I GIGPK A++++ EH + +LE + T+P
Sbjct: 206 AKHDITYEQLVDIAMLCGTDFNEGITGIGPKTAVKVVTEHGDLWSVLE---ARGDTIPNA 262
Query: 180 WLYKEARELFRHPEV 194
RE F P V
Sbjct: 263 ---DRVREFFLDPPV 274
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 34/112 (30%), Positives = 60/112 (53%), Gaps = 3/112 (2%)
Query: 298 ADPETIELVADVAPSSIRESRKICIDASMSLYQFLIAV--RSEGNQLMSVDGEPTSHLMG 355
AD T+ +++V+ + S + +DA LY++L + + + +GE ++L+G
Sbjct: 4 ADLRTLAALSEVSFDEVAGS-VVAVDAHNWLYRYLTTTVKWTSSEKYTTTEGEEVANLVG 62
Query: 356 TFYRTIRLVEHGLKPIYVFDGKPPTLKSGELNKRMEKREDAQKALAKAQEQG 407
+ EH L P++VFDG +K E+ KR E+RE A++ L A+E G
Sbjct: 63 IVQGLPKFFEHDLTPVFVFDGGVTEMKDDEVAKRREQREKAEERLEAAREAG 114
Score = 46.2 bits (108), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 35/66 (53%), Gaps = 6/66 (9%)
Query: 232 FIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGWLYKEAREL 291
+D+ +L G D+ + I GIGPK A++++ EH + +LE + T+P RE
Sbjct: 215 LVDIAMLCGTDFNEGITGIGPKTAVKVVTEHGDLWSVLE---ARGDTIPNA---DRVREF 268
Query: 292 FRHPEI 297
F P +
Sbjct: 269 FLDPPV 274
>gi|426195250|gb|EKV45180.1| hypothetical protein AGABI2DRAFT_225025 [Agaricus bisporus var.
bisporus H97]
Length = 575
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 46/132 (34%), Positives = 73/132 (55%), Gaps = 7/132 (5%)
Query: 64 EAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVLEGME 123
E E +++V G +ED D L +G+ I+ R+ T + P+ H V E ++
Sbjct: 385 EGEGVASSLVLQGMADYVVSEDTDVLVYGAPIV-RNFT---SHGNPLTVIHGNDVREALD 440
Query: 124 LSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVP-EGWL- 181
LS++ ID ILLG D+ IR +GP RA++LIKE+ +IE IL + + T+P E ++
Sbjct: 441 LSNDACIDFAILLGTDFSQRIRNVGPIRALKLIKEYETIENILNSQTKHQPTIPHEEYMA 500
Query: 182 -YKEARELFRHP 192
+ AR +F P
Sbjct: 501 QVESARAIFSSP 512
Score = 55.1 bits (131), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 28/66 (42%), Positives = 41/66 (62%), Gaps = 3/66 (4%)
Query: 233 IDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVP-EGWL--YKEAR 289
ID ILLG D+ IR +GP RA++LIKE+ +IE IL + + T+P E ++ + AR
Sbjct: 447 IDFAILLGTDFSQRIRNVGPIRALKLIKEYETIENILNSQTKHQPTIPHEEYMAQVESAR 506
Query: 290 ELFRHP 295
+F P
Sbjct: 507 AIFSSP 512
>gi|118596598|dbj|BAF37958.1| flap endonuclease-1 [Thermoplasma sp. S02]
Length = 336
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 41/93 (44%), Positives = 58/93 (62%), Gaps = 1/93 (1%)
Query: 317 SRKICIDASMSLYQFLIAVRS-EGNQLMSVDGEPTSHLMGTFYRTIRLVEHGLKPIYVFD 375
++ ID LYQ L VR +G LM G TSHL G FYRTI L+E+ ++P+YVFD
Sbjct: 21 NQTFSIDTYNILYQLLSNVRQYDGMPLMDSHGNVTSHLYGIFYRTINLLENRIRPVYVFD 80
Query: 376 GKPPTLKSGELNKRMEKREDAQKALAKAQEQGK 408
GKP LK+ +++R +E A+ L +A E+G+
Sbjct: 81 GKPSPLKNRTISERQLMKEKAKVELEEAIERGE 113
Score = 75.1 bits (183), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 44/145 (30%), Positives = 75/145 (51%), Gaps = 16/145 (11%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFH------ 114
AP E EAQ + M K V ++D D L FG+ +LR+ RK+P + +
Sbjct: 148 APSEGEAQASYMTKKN-VDGVISQDYDCLLFGARKILRNFAIYGRRKVPRKNIYKTVYPE 206
Query: 115 ---LEKVLEGMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDT 171
L++VL +++ ++ I + IL+G D+ + I+GIG K+A+ LIK+ I+ +L+ I
Sbjct: 207 YIILDEVLSANQINQDQLIGIGILVGTDFNEGIKGIGAKKALALIKKEGDIKSVLKRIGK 266
Query: 172 KKYTVPEGWLYKEARELFRHPEVAD 196
+ E + F++P V D
Sbjct: 267 NIENL------DEVIDFFKNPPVVD 285
Score = 43.1 bits (100), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 31/48 (64%)
Query: 3 LKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSSTTQGRLDSF 50
K+ PD D + ++LC + +F+ +RIR+ + L K ++TQ RLDSF
Sbjct: 288 FKFRKPDTDAIERFLCDEHDFSRERIRDHLESLRKNDQASTQFRLDSF 335
Score = 42.7 bits (99), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 30/48 (62%)
Query: 409 LKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSTTTQGRLDSF 456
K+ PD D + ++LC + +F+ +RIR+ + L K +TQ RLDSF
Sbjct: 288 FKFRKPDTDAIERFLCDEHDFSRERIRDHLESLRKNDQASTQFRLDSF 335
Score = 42.0 bits (97), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 37/68 (54%), Gaps = 6/68 (8%)
Query: 232 FIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGWLYKEAREL 291
I + IL+G D+ + I+GIG K+A+ LIK+ I+ +L+ I + E +
Sbjct: 224 LIGIGILVGTDFNEGIKGIGAKKALALIKKEGDIKSVLKRIGKNIENL------DEVIDF 277
Query: 292 FRHPEIAD 299
F++P + D
Sbjct: 278 FKNPPVVD 285
>gi|391332092|ref|XP_003740472.1| PREDICTED: DNA repair protein complementing XP-G cells homolog
[Metaseiulus occidentalis]
Length = 957
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 42/111 (37%), Positives = 66/111 (59%), Gaps = 5/111 (4%)
Query: 60 KAPCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVL 119
+AP EAEAQCAA+ +AG V T+D D FG N++ +++ FS+ + E + K +
Sbjct: 706 RAPREAEAQCAALEQAGLVQGVVTDDSDIFLFGGNVVYKNL-FSQDHQC---EMYAAKTI 761
Query: 120 E-GMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENI 169
E ++LS E+ I +L G DY + I +GP A E+I E RS + +L+ +
Sbjct: 762 ESNLKLSREDLIGFAMLTGSDYTNGIENVGPVMACEIIAEFRSGKSVLKTL 812
Score = 61.6 bits (148), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 32/91 (35%), Positives = 51/91 (56%), Gaps = 5/91 (5%)
Query: 316 ESRKICIDASMSLYQFLIAVRSEGNQLMSVDGEPTSHLMGTFYRTIRLVEHGLKPIYVFD 375
E + + ID S+ L Q + R+ G G +HL+G F R +L+ + +KP++VFD
Sbjct: 23 EGKVLAIDISIWLNQLIKGYRTSGGA-----GVDNAHLVGLFQRVCKLLHYKIKPVFVFD 77
Query: 376 GKPPTLKSGELNKRMEKREDAQKALAKAQEQ 406
G+ P LK L R +RED +A+ KA ++
Sbjct: 78 GEAPALKYQTLASRKRRREDGNEAIRKATQR 108
>gi|448578528|ref|ZP_21643963.1| flap endonuclease-1 [Haloferax larsenii JCM 13917]
gi|445727069|gb|ELZ78685.1| flap endonuclease-1 [Haloferax larsenii JCM 13917]
Length = 326
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 42/137 (30%), Positives = 70/137 (51%), Gaps = 10/137 (7%)
Query: 60 KAPCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVL 119
+AP E EAQ + M + G +ED D L FG+ LR +T +L L+ L
Sbjct: 150 EAPAEGEAQASYMARKGDADYVGSEDYDTLLFGAPYTLRQLTSKGNPEL----MDLDATL 205
Query: 120 EGMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEG 179
+ +++ E+ +D+ +L G D+ + I G+GPK A++ +K+H + +LE + ++P
Sbjct: 206 DKHDITWEQLVDIAMLCGTDFNEGISGVGPKTAVKEVKKHGDLWAVLE---ARGDSIPNA 262
Query: 180 WLYKEARELFRHPEVAD 196
RE F P V D
Sbjct: 263 ---DRVREFFLDPPVTD 276
Score = 48.9 bits (115), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 41/77 (53%), Gaps = 2/77 (2%)
Query: 320 ICIDASMSLYQFLIAVRSEGN--QLMSVDGEPTSHLMGTFYRTIRLVEHGLKPIYVFDGK 377
+ +DA LY++L N + + +GE ++L+G + EH L P++VFDG
Sbjct: 25 VAVDAHNWLYRYLTTTVKWTNSEKYTTSEGEEVANLVGIVQGLPKFFEHDLTPVFVFDGG 84
Query: 378 PPTLKSGELNKRMEKRE 394
+K E+ KR E+RE
Sbjct: 85 VTEMKDDEVAKRREQRE 101
Score = 44.7 bits (104), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 36/68 (52%), Gaps = 6/68 (8%)
Query: 232 FIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGWLYKEAREL 291
+D+ +L G D+ + I G+GPK A++ +K+H + +LE + ++P RE
Sbjct: 215 LVDIAMLCGTDFNEGISGVGPKTAVKEVKKHGDLWAVLE---ARGDSIPNA---DRVREF 268
Query: 292 FRHPEIAD 299
F P + D
Sbjct: 269 FLDPPVTD 276
>gi|346973852|gb|EGY17304.1| DNA-repair protein rad13 [Verticillium dahliae VdLs.17]
Length = 1187
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 51/154 (33%), Positives = 75/154 (48%), Gaps = 16/154 (10%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVLE 120
AP EAEAQCA +V+ G V T+D D FG + ++M S + E +L L+
Sbjct: 905 APMEAEAQCAELVRLGLVDGIVTDDSDTFLFGGTRVYKNMFNSNK----LVECYLSSDLD 960
Query: 121 G-MELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENI---------- 169
+ LS E+ + + +LLG DY D + G+GP A+E++ E E L
Sbjct: 961 KELSLSREQLVSIALLLGSDYTDGLPGVGPVTAVEILSEFPESEGGLAAFCDWWADFRKS 1020
Query: 170 DTKKYTVPEGWLYKEARELFRHPEVAD-PETIEF 202
K +P G+ RE + PEV D PET ++
Sbjct: 1021 QATKLFLPVGFPNPAVREAYMKPEVDDSPETFQW 1054
Score = 60.1 bits (144), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 29/66 (43%), Positives = 44/66 (66%), Gaps = 7/66 (10%)
Query: 318 RKICIDASMSLYQFLIAVRS-EGNQLMSVDGEPTSHLMGTFYRTIRLVEHGLKPIYVFDG 376
+++ +DAS+ +YQFL AVR EGN L + SH++G F R +L+ G++P++VFDG
Sbjct: 25 KRLAVDASIWIYQFLKAVRDKEGNALRN------SHVVGFFRRICKLLWFGIRPVFVFDG 78
Query: 377 KPPTLK 382
P LK
Sbjct: 79 GAPALK 84
Score = 44.3 bits (103), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 38/84 (45%), Gaps = 11/84 (13%)
Query: 232 FIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENI----------DTKKYTVPE 281
+ + +LLG DY D + G+GP A+E++ E E L K +P
Sbjct: 970 LVSIALLLGSDYTDGLPGVGPVTAVEILSEFPESEGGLAAFCDWWADFRKSQATKLFLPV 1029
Query: 282 GWLYKEARELFRHPEIAD-PETIE 304
G+ RE + PE+ D PET +
Sbjct: 1030 GFPNPAVREAYMKPEVDDSPETFQ 1053
>gi|448825476|ref|YP_007418407.1| putative endonuclease of the xpg family [Megavirus lba]
gi|444236661|gb|AGD92431.1| putative endonuclease of the xpg family [Megavirus lba]
Length = 443
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 43/127 (33%), Positives = 66/127 (51%), Gaps = 14/127 (11%)
Query: 61 APCEAEAQCAAMV----------KAGK----VYATATEDMDALTFGSNILLRHMTFSEAR 106
+P EA+ C+ + + GK V ++D D L G+ L + M +
Sbjct: 154 SPGEADVVCSWLASRVDPNYIDPETGKKKRYVTGVCSDDSDMLALGAPYLFKDMLKFMTK 213
Query: 107 KLPVQEFHLEKVLEGMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKIL 166
V L L+ L+ +F DLC+LLGCDYCD+I+GIGPK A ++IK+ S+E ++
Sbjct: 214 NKDVTVISLRTTLKSTGLTMRQFTDLCVLLGCDYCDNIKGIGPKTAYKMIKQFGSLENVI 273
Query: 167 ENIDTKK 173
+N KK
Sbjct: 274 KNDHEKK 280
Score = 69.3 bits (168), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 53/80 (66%)
Query: 319 KICIDASMSLYQFLIAVRSEGNQLMSVDGEPTSHLMGTFYRTIRLVEHGLKPIYVFDGKP 378
++ +D S+ ++Q +IA+RS G + + GE TSHL G Y+ + +++G+ PI VFDGK
Sbjct: 30 RVAVDMSLLIHQTVIAMRSNGRDMTNQKGELTSHLYGILYKMLTFLQNGMTPICVFDGKA 89
Query: 379 PTLKSGELNKRMEKREDAQK 398
P +K+ ++ R +++ A+K
Sbjct: 90 PEIKNKTVDIRRSRKDAAEK 109
Score = 62.8 bits (151), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 26/45 (57%), Positives = 36/45 (80%)
Query: 232 FIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKK 276
F DLC+LLGCDYCD+I+GIGPK A ++IK+ S+E +++N KK
Sbjct: 236 FTDLCVLLGCDYCDNIKGIGPKTAYKMIKQFGSLENVIKNDHEKK 280
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/43 (51%), Positives = 32/43 (74%)
Query: 201 EFIDLCILLGCDYCDSIRGIGPKRAIELLYSFIDLCILLGCDY 243
+F DLC+LLGCDYCD+I+GIGPK A +++ F L ++ D+
Sbjct: 235 QFTDLCVLLGCDYCDNIKGIGPKTAYKMIKQFGSLENVIKNDH 277
>gi|68076257|ref|XP_680048.1| endonuclease [Plasmodium berghei strain ANKA]
gi|56500919|emb|CAI05790.1| endonuclease, putative [Plasmodium berghei]
Length = 390
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 42/112 (37%), Positives = 68/112 (60%), Gaps = 5/112 (4%)
Query: 64 EAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVLEGME 123
+AE +CA K ++D DAL FG+ L+R +T + R + + +++L +
Sbjct: 247 DAEKECAIQCSHEKD-IVVSDDTDALAFGAPNLIRFITNKKKRHI----INKDEILNELN 301
Query: 124 LSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYT 175
+++E+FID CIL GCDY I GIGP +A E+IK++++IE LE+ KY+
Sbjct: 302 INYEQFIDFCILSGCDYSAKIPGIGPIKAYEIIKKYKTIETFLESSAFDKYS 353
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/47 (53%), Positives = 33/47 (70%)
Query: 232 FIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYT 278
FID CIL GCDY I GIGP +A E+IK++++IE LE+ KY+
Sbjct: 307 FIDFCILSGCDYSAKIPGIGPIKAYEIIKKYKTIETFLESSAFDKYS 353
Score = 43.5 bits (101), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 29/50 (58%), Gaps = 3/50 (6%)
Query: 183 KEARELFRHPEVADPETI---EFIDLCILLGCDYCDSIRGIGPKRAIELL 229
K+ R + E+ + I +FID CIL GCDY I GIGP +A E++
Sbjct: 285 KKKRHIINKDEILNELNINYEQFIDFCILSGCDYSAKIPGIGPIKAYEII 334
>gi|222445720|ref|ZP_03608235.1| hypothetical protein METSMIALI_01362 [Methanobrevibacter smithii
DSM 2375]
gi|222435285|gb|EEE42450.1| XPG N-terminal domain protein [Methanobrevibacter smithii DSM 2375]
Length = 110
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 37/87 (42%), Positives = 55/87 (63%), Gaps = 1/87 (1%)
Query: 318 RKICIDASMSLYQFLIAVRS-EGNQLMSVDGEPTSHLMGTFYRTIRLVEHGLKPIYVFDG 376
R I IDA +LYQFL +R +G+ L +G TSHL G YR ++E +KPIYVFDG
Sbjct: 22 RAISIDAFNTLYQFLSTIRQRDGSPLSDSNGNITSHLSGILYRNSSMIEKDIKPIYVFDG 81
Query: 377 KPPTLKSGELNKRMEKREDAQKALAKA 403
P LK +++R + RE+++K + ++
Sbjct: 82 TPSYLKQETIDQRRQTREESEKKMERS 108
>gi|297740589|emb|CBI30771.3| unnamed protein product [Vitis vinifera]
Length = 547
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 50/163 (30%), Positives = 83/163 (50%), Gaps = 5/163 (3%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFG-SNILLRHMTFSEARKLPVQEFHLEKVL 119
AP EA+AQ + + +V A TED D + FG I+ + F + + K L
Sbjct: 147 APYEADAQMTFLAVSQQVDAIITEDSDMIPFGCPRIIFKMDKFGQGVEFKYSMIQQNKEL 206
Query: 120 EGMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEG 179
+ + +++CIL GCDY S+ G+G K+A LIK+ +S +K+++++ +VP
Sbjct: 207 SFAGFTKQMILEMCILSGCDYLQSLPGMGLKKAHALIKKFKSYDKVIKHLRYATGSVPPL 266
Query: 180 W--LYKEARELFRHPEVADPETIEFIDLCILLGCDYCDSIRGI 220
+ +K+A F+H V DP + + L +L D D I I
Sbjct: 267 YEESFKKAMLTFQHQRVYDPTIEDIVHLSVL--SDNVDRILTI 307
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 31/93 (33%), Positives = 55/93 (59%), Gaps = 3/93 (3%)
Query: 232 FIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGW--LYKEAR 289
+++CIL GCDY S+ G+G K+A LIK+ +S +K+++++ +VP + +K+A
Sbjct: 216 ILEMCILSGCDYLQSLPGMGLKKAHALIKKFKSYDKVIKHLRYATGSVPPLYEESFKKAM 275
Query: 290 ELFRHPEIADPETIELVADVAPSSIRESRKICI 322
F+H + DP TIE + ++ S R + I
Sbjct: 276 LTFQHQRVYDP-TIEDIVHLSVLSDNVDRILTI 307
>gi|451927433|gb|AGF85311.1| endonuclease of the XPG family [Moumouvirus goulette]
Length = 431
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 43/119 (36%), Positives = 65/119 (54%), Gaps = 6/119 (5%)
Query: 61 APCEAEAQCAAMV----KAGKVYATA--TEDMDALTFGSNILLRHMTFSEARKLPVQEFH 114
AP EA+ C+ + + GK Y ++D D L G+ L + M ++ V
Sbjct: 155 APGEADVVCSWLAARRDENGKRYVKGVCSDDSDMLALGAPYLFKDMLKFMSKNKEVTIIS 214
Query: 115 LEKVLEGMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKK 173
L K L L+ +F DLC+LLGCDYCD+I+G+GPK A IKE S+E+++ + K+
Sbjct: 215 LNKTLTKTGLTMRQFTDLCVLLGCDYCDNIKGVGPKTAYTKIKECGSLEEVINMVHKKR 273
Score = 72.8 bits (177), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 32/82 (39%), Positives = 54/82 (65%)
Query: 319 KICIDASMSLYQFLIAVRSEGNQLMSVDGEPTSHLMGTFYRTIRLVEHGLKPIYVFDGKP 378
K+ +D S+ ++Q +IA+RS G + + GE TSHL G Y+ + +++G+ PI VFDGK
Sbjct: 31 KVSVDMSLLIHQTVIAMRSNGKDMTNRKGELTSHLYGILYKMLVFLQNGMTPICVFDGKA 90
Query: 379 PTLKSGELNKRMEKREDAQKAL 400
P +K+ ++ R K++ A+K L
Sbjct: 91 PDIKNKTVDLRRSKKDAAEKKL 112
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/45 (53%), Positives = 34/45 (75%)
Query: 232 FIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKK 276
F DLC+LLGCDYCD+I+G+GPK A IKE S+E+++ + K+
Sbjct: 229 FTDLCVLLGCDYCDNIKGVGPKTAYTKIKECGSLEEVINMVHKKR 273
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 18/25 (72%), Positives = 23/25 (92%)
Query: 201 EFIDLCILLGCDYCDSIRGIGPKRA 225
+F DLC+LLGCDYCD+I+G+GPK A
Sbjct: 228 QFTDLCVLLGCDYCDNIKGVGPKTA 252
>gi|448124207|ref|XP_004204862.1| Piso0_000145 [Millerozyma farinosa CBS 7064]
gi|358249495|emb|CCE72561.1| Piso0_000145 [Millerozyma farinosa CBS 7064]
Length = 1067
Score = 76.6 bits (187), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 44/117 (37%), Positives = 70/117 (59%), Gaps = 5/117 (4%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVLE 120
AP EAEAQCA +++ G V T+D D FG + + ++M F++ + + E + +K +E
Sbjct: 822 APMEAEAQCAELMRIGLVDGIITDDSDCFLFGGDKVYKNM-FNQKKYV---ECYSQKDIE 877
Query: 121 G-MELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTV 176
+ LS + I+L +LLG DY ++GIGP A+E++ E S+EK E DT +T
Sbjct: 878 SHLGLSQDNLIELALLLGSDYTRGVKGIGPVLAVEILAEFGSLEKFKEWFDTNIHTT 934
Score = 70.9 bits (172), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 36/85 (42%), Positives = 54/85 (63%), Gaps = 7/85 (8%)
Query: 318 RKICIDASMSLYQFLIAVR-SEGNQLMSVDGEPTSHLMGTFYRTIRLVEHGLKPIYVFDG 376
+K+ +DAS+ +YQFL AVR +EGN L P SH++G F R +L+ +G+ P++VFDG
Sbjct: 25 KKLAVDASIWIYQFLKAVRDAEGNAL------PQSHIVGFFRRICKLLYYGIMPVFVFDG 78
Query: 377 KPPTLKSGELNKRMEKREDAQKALA 401
P LK + R KRED +++
Sbjct: 79 GAPILKKQTIADRRAKREDKTESVT 103
Score = 48.1 bits (113), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 21/49 (42%), Positives = 31/49 (63%)
Query: 231 SFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTV 279
+ I+L +LLG DY ++GIGP A+E++ E S+EK E DT +T
Sbjct: 886 NLIELALLLGSDYTRGVKGIGPVLAVEILAEFGSLEKFKEWFDTNIHTT 934
>gi|145324070|ref|NP_001077624.1| exonuclease 1 [Arabidopsis thaliana]
gi|166232400|sp|Q8L6Z7.2|EXO1_ARATH RecName: Full=Exonuclease 1
gi|332192991|gb|AEE31112.1| exonuclease 1 [Arabidopsis thaliana]
Length = 735
Score = 76.6 bits (187), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 48/149 (32%), Positives = 76/149 (51%), Gaps = 3/149 (2%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFG-SNILLRHMTFSEARKLPVQEFHLEKVL 119
AP EA+AQ A + +V A TED D + FG I+ + F + + K L
Sbjct: 147 APYEADAQMAFLAITKQVDAIITEDSDLIPFGCLRIIFKMDKFGHGVEFQASKLPKNKDL 206
Query: 120 EGMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEG 179
S + +++CIL GCDY S+ G+G KRA LI + +S +++++++ +VP
Sbjct: 207 SLSGFSSQMLLEMCILSGCDYLQSLPGMGLKRAHALITKFKSYDRVIKHLKYSTVSVPPL 266
Query: 180 W--LYKEARELFRHPEVADPETIEFIDLC 206
+ +K A F+H V DP + I LC
Sbjct: 267 YEESFKRALLTFKHQRVYDPNAEDIIHLC 295
Score = 51.6 bits (122), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 46/77 (59%), Gaps = 2/77 (2%)
Query: 232 FIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGW--LYKEAR 289
+++CIL GCDY S+ G+G KRA LI + +S +++++++ +VP + +K A
Sbjct: 216 LLEMCILSGCDYLQSLPGMGLKRAHALITKFKSYDRVIKHLKYSTVSVPPLYEESFKRAL 275
Query: 290 ELFRHPEIADPETIELV 306
F+H + DP +++
Sbjct: 276 LTFKHQRVYDPNAEDII 292
Score = 40.0 bits (92), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 25/61 (40%), Positives = 33/61 (54%), Gaps = 4/61 (6%)
Query: 347 GEPTS-HLMGTFYRTIRLVEHGLKPIYVFDGKPPTLKSGELNKRMEKREDAQKALAKAQE 405
G PT H+ +R L HG+KPI VFDG P +K + NKR R ++ LA+A E
Sbjct: 49 GLPTKRHIQYCMHRVNLLRHHGVKPIMVFDGGPLPMKLEQENKRARSR---KENLARALE 105
Query: 406 Q 406
Sbjct: 106 H 106
>gi|326433198|gb|EGD78768.1| exonuclease 1 [Salpingoeca sp. ATCC 50818]
Length = 686
Score = 76.6 bits (187), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 46/146 (31%), Positives = 76/146 (52%), Gaps = 7/146 (4%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFG-SNILLRHMTFSEARKLPVQEF----HL 115
AP EA+AQ A + + V+A TED D L +G +L + + +++ +Q +
Sbjct: 147 APYEADAQLAFLATSKYVHAVITEDSDLLVYGCPRVLFKMDEYGTGQEIRMQRLFQGAQI 206
Query: 116 EKVLEGMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYT 175
+ M + +F +CIL GCDY S G+G K A ++ K H +I+KI++ I ++
Sbjct: 207 STTINFMSWTQRQFRKMCILAGCDYLPSPTGLGVKTAFKIAKIHDNIDKIVQVIASRGIR 266
Query: 176 VPEGW--LYKEARELFRHPEVADPET 199
VP + +++ A F H V DP T
Sbjct: 267 VPADYAEMFRRAELTFDHQPVYDPVT 292
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 42/73 (57%), Gaps = 2/73 (2%)
Query: 232 FIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGW--LYKEAR 289
F +CIL GCDY S G+G K A ++ K H +I+KI++ I ++ VP + +++ A
Sbjct: 220 FRKMCILAGCDYLPSPTGLGVKTAFKIAKIHDNIDKIVQVIASRGIRVPADYAEMFRRAE 279
Query: 290 ELFRHPEIADPET 302
F H + DP T
Sbjct: 280 LTFDHQPVYDPVT 292
>gi|325182167|emb|CCA16620.1| exonuclease 1 putative [Albugo laibachii Nc14]
Length = 701
Score = 76.6 bits (187), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 48/145 (33%), Positives = 77/145 (53%), Gaps = 12/145 (8%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVLE 120
AP EA+AQ A +VK G V TED D L F N ++ M ++ QE ++ +L
Sbjct: 166 APYEADAQLAYLVKCGLVNGVITEDSDCLVFDCNKVVFKMDWNGKG----QEIKVQSILR 221
Query: 121 GME-----LSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTK-KY 174
E +H+ F+++CI GCDY +I +G K + L +++ S+ K+L N+ + K
Sbjct: 222 NSEPNMQGFTHDMFMEMCIFSGCDYLANIPRLGLKTSYNLFRKYGSVRKVLRNLRLEGKV 281
Query: 175 TVPEGWL--YKEARELFRHPEVADP 197
VP + + +A+ F+H V DP
Sbjct: 282 KVPASYEEDFAKAKLTFKHQRVYDP 306
Score = 48.5 bits (114), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 47/83 (56%), Gaps = 3/83 (3%)
Query: 232 FIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTK-KYTVPEGWL--YKEA 288
F+++CI GCDY +I +G K + L +++ S+ K+L N+ + K VP + + +A
Sbjct: 235 FMEMCIFSGCDYLANIPRLGLKTSYNLFRKYGSVRKVLRNLRLEGKVKVPASYEEDFAKA 294
Query: 289 RELFRHPEIADPETIELVADVAP 311
+ F+H + DP +LV +P
Sbjct: 295 KLTFKHQRVYDPLNKKLVFLSSP 317
>gi|269986761|gb|EEZ93040.1| XPG I domain protein [Candidatus Parvarchaeum acidiphilum ARMAN-4]
Length = 332
Score = 76.6 bits (187), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 46/152 (30%), Positives = 84/152 (55%), Gaps = 13/152 (8%)
Query: 60 KAPCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARK----------LP 109
+AP E EAQ A + GKV+A A++D D L FG+ ++R++ + RK LP
Sbjct: 145 QAPAEGEAQAAQLNMQGKVFAAASQDYDTLLFGAKKVVRNLNITNKRKISGKGITTSVLP 204
Query: 110 VQEFHLEKVLEGMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENI 169
+ + L + ++ E+ I L + +G DY + GIGPK+A++++KE +S E+I +
Sbjct: 205 -ELINANPNLARLGITREQLITLSLFVGTDYNKGVDGIGPKKALKIVKE-KSREEIFASY 262
Query: 170 DTKK-YTVPEGWLYKEARELFRHPEVADPETI 200
D + Y++ E + Y + ++ E +P+ +
Sbjct: 263 DFRSDYSIKEIYDYFISPKIIEVNEDLNPKKL 294
Score = 69.7 bits (169), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 35/98 (35%), Positives = 59/98 (60%), Gaps = 5/98 (5%)
Query: 311 PSSIR----ESRKICIDASMSLYQFLIAVR-SEGNQLMSVDGEPTSHLMGTFYRTIRLVE 365
PS I+ + I IDA ++QFL +R ++G+ L G+ T+HL G FYR++ ++E
Sbjct: 11 PSKIKMGELSGKLIAIDAFNWIFQFLTTIRLADGSYLTDSKGKVTTHLNGLFYRSVSMLE 70
Query: 366 HGLKPIYVFDGKPPTLKSGELNKRMEKREDAQKALAKA 403
+ +KP++VFDG P K L +R + +E+A + + A
Sbjct: 71 NRIKPVFVFDGAAPKFKKETLKEREKTKEEAIEKMQNA 108
Score = 43.1 bits (100), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 47/91 (51%), Gaps = 13/91 (14%)
Query: 232 FIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKK-YTVPEGWLYKEARE 290
I L + +G DY + GIGPK+A++++KE +S E+I + D + Y++ E + Y
Sbjct: 223 LITLSLFVGTDYNKGVDGIGPKKALKIVKE-KSREEIFASYDFRSDYSIKEIYDY----- 276
Query: 291 LFRHPEIADPETIELVADVAPSSIRESRKIC 321
P+ IE+ D+ P + + + +
Sbjct: 277 ------FISPKIIEVNEDLNPKKLNKEKLVS 301
>gi|374636521|ref|ZP_09708087.1| flap structure-specific endonuclease [Methanotorris formicicus
Mc-S-70]
gi|373558724|gb|EHP85052.1| flap structure-specific endonuclease [Methanotorris formicicus
Mc-S-70]
Length = 326
Score = 76.6 bits (187), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 48/143 (33%), Positives = 84/143 (58%), Gaps = 15/143 (10%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVLE 120
AP E E Q + M K G V+ ++D DAL +G+ ++R++T A K ++ L++VL
Sbjct: 149 APAEGEGQASYMAKKGDVFCVVSQDYDALLYGAPRVVRNLT---ATKEELELIELKEVLN 205
Query: 121 GMELSHEEFIDLCILLGCDYC-DSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEG 179
+ +SH++ ID+ IL+G DY ++GIGPK+A+E+ K ++ E L+ I+
Sbjct: 206 ELGISHDDLIDMAILIGTDYNPKGVKGIGPKKALEIAK-SKNKELYLKAIEN-------- 256
Query: 180 WLYKEARELFRHPEVADPETIEF 202
Y+E + +F++P+V D I+
Sbjct: 257 --YEEIKNIFKNPKVTDEYNIKL 277
Score = 73.2 bits (178), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 38/96 (39%), Positives = 57/96 (59%), Gaps = 1/96 (1%)
Query: 311 PSSIRESRKICIDASMSLYQFLIAVR-SEGNQLMSVDGEPTSHLMGTFYRTIRLVEHGLK 369
P + + ID LYQFL ++R +G+ L + GE TS G FY+TI ++E+ +
Sbjct: 15 PIKYLSGKTVAIDGMNVLYQFLSSIRLRDGSPLRNKKGEITSTYNGIFYKTIYMLENDVT 74
Query: 370 PIYVFDGKPPTLKSGELNKRMEKREDAQKALAKAQE 405
P++VFDGKPP LK +R + RE A++ KA+E
Sbjct: 75 PVWVFDGKPPKLKEKTREERRKMREKAKEEFIKAKE 110
Score = 45.4 bits (106), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 44/75 (58%), Gaps = 12/75 (16%)
Query: 232 FIDLCILLGCDYC-DSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGWLYKEARE 290
ID+ IL+G DY ++GIGPK+A+E+ K ++ E L+ I+ Y+E +
Sbjct: 214 LIDMAILIGTDYNPKGVKGIGPKKALEIAK-SKNKELYLKAIEN----------YEEIKN 262
Query: 291 LFRHPEIADPETIEL 305
+F++P++ D I+L
Sbjct: 263 IFKNPKVTDEYNIKL 277
>gi|255639461|gb|ACU20025.1| unknown [Glycine max]
Length = 287
Score = 76.6 bits (187), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 53/146 (36%), Positives = 80/146 (54%), Gaps = 13/146 (8%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFG-SNILLRHMTFSEARKLPVQEFHLEKVL 119
AP EA+AQ + +G+V A TED D + FG I+ + F + + Q+ L+K
Sbjct: 147 APYEADAQMTFLAISGQVDAVITEDSDLIPFGCPRIIFKMDKFGQGVQF--QDSMLQK-- 202
Query: 120 EGMELSHEEF-----IDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKY 174
ELS E F +++CIL GCDY S+ G+G KRA IK+ RS +K+L+++
Sbjct: 203 -NKELSFEGFNRQMLLEMCILSGCDYLQSLSGMGLKRAHASIKKFRSYDKVLKHLRYSGV 261
Query: 175 TVPEGW--LYKEARELFRHPEVADPE 198
+VP + +K+A FR+ V DP
Sbjct: 262 SVPPFYEESFKKAILTFRYQRVYDPN 287
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 44/72 (61%), Gaps = 2/72 (2%)
Query: 232 FIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGW--LYKEAR 289
+++CIL GCDY S+ G+G KRA IK+ RS +K+L+++ +VP + +K+A
Sbjct: 216 LLEMCILSGCDYLQSLSGMGLKRAHASIKKFRSYDKVLKHLRYSGVSVPPFYEESFKKAI 275
Query: 290 ELFRHPEIADPE 301
FR+ + DP
Sbjct: 276 LTFRYQRVYDPN 287
>gi|159488115|ref|XP_001702066.1| predicted protein [Chlamydomonas reinhardtii]
gi|158271440|gb|EDO97259.1| predicted protein [Chlamydomonas reinhardtii]
Length = 294
Score = 76.6 bits (187), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 45/142 (31%), Positives = 72/142 (50%), Gaps = 3/142 (2%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFG-SNILLRHMTFSEARKLPVQEFHLEKVL 119
AP EA+AQ + + G+V+A TED D L +G +L + ++ + + L + L
Sbjct: 147 APYEADAQLSYLALRGEVHAVLTEDSDMLAYGCPRVLYKLDRAGHGEEVLLADLPLVREL 206
Query: 120 EGMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEG 179
H+ + +CIL GCD+ +I G+G K+A LIK+HR +++ + TVP
Sbjct: 207 NMAGFDHDMLLQMCILAGCDFLPNISGVGIKKAHGLIKKHRDFVRVVRTLRFNGTTVPPN 266
Query: 180 WLYKEARE--LFRHPEVADPET 199
+ + R LFRH V P
Sbjct: 267 YEVRFQRTLWLFRHQRVFCPAA 288
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 39/73 (53%), Gaps = 2/73 (2%)
Query: 232 FIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGWLYKEARE- 290
+ +CIL GCD+ +I G+G K+A LIK+HR +++ + TVP + + R
Sbjct: 216 LLQMCILAGCDFLPNISGVGIKKAHGLIKKHRDFVRVVRTLRFNGTTVPPNYEVRFQRTL 275
Query: 291 -LFRHPEIADPET 302
LFRH + P
Sbjct: 276 WLFRHQRVFCPAA 288
>gi|47180383|emb|CAG14230.1| unnamed protein product [Tetraodon nigroviridis]
Length = 103
Score = 76.6 bits (187), Expect = 3e-11, Method: Composition-based stats.
Identities = 35/47 (74%), Positives = 42/47 (89%)
Query: 60 KAPCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEAR 106
+APCEAEA CAA+ KAGKV+ TATEDMD LTFG+N+LLRH+T SEA+
Sbjct: 56 EAPCEAEASCAALAKAGKVFGTATEDMDGLTFGTNVLLRHLTASEAK 102
>gi|441432364|ref|YP_007354406.1| putative endonuclease of the XPG family [Acanthamoeba polyphaga
moumouvirus]
gi|440383444|gb|AGC01970.1| putative endonuclease of the XPG family [Acanthamoeba polyphaga
moumouvirus]
Length = 431
Score = 76.6 bits (187), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 43/119 (36%), Positives = 65/119 (54%), Gaps = 6/119 (5%)
Query: 61 APCEAEAQCAAMV----KAGKVYATA--TEDMDALTFGSNILLRHMTFSEARKLPVQEFH 114
AP EA+ C+ + + G Y ++D D L G+ L + M ++ V
Sbjct: 155 APGEADVVCSWLAARRDENGDRYVKGVCSDDSDMLALGAPYLFKDMLKFMSKNKEVTIIS 214
Query: 115 LEKVLEGMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKK 173
L K L L+ +F DLC+LLGCDYCD+I+GIGPK A IKE S+E++++ + K+
Sbjct: 215 LNKTLTKTGLTMRQFTDLCVLLGCDYCDNIKGIGPKTAYNKIKECGSLEEVIKMVHKKR 273
Score = 70.9 bits (172), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 31/80 (38%), Positives = 53/80 (66%)
Query: 319 KICIDASMSLYQFLIAVRSEGNQLMSVDGEPTSHLMGTFYRTIRLVEHGLKPIYVFDGKP 378
K+ +D S+ ++Q +IA+RS G + + GE TSHL G Y+ + +++G+ PI VFDGK
Sbjct: 31 KVSVDMSLLIHQTVIAMRSNGKDMKNRKGELTSHLYGILYKMLVFLQNGMTPICVFDGKA 90
Query: 379 PTLKSGELNKRMEKREDAQK 398
P +K+ ++ R K++ A+K
Sbjct: 91 PDIKNKTVDIRRSKKDAAEK 110
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/45 (55%), Positives = 35/45 (77%)
Query: 232 FIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKK 276
F DLC+LLGCDYCD+I+GIGPK A IKE S+E++++ + K+
Sbjct: 229 FTDLCVLLGCDYCDNIKGIGPKTAYNKIKECGSLEEVIKMVHKKR 273
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/25 (76%), Positives = 23/25 (92%)
Query: 201 EFIDLCILLGCDYCDSIRGIGPKRA 225
+F DLC+LLGCDYCD+I+GIGPK A
Sbjct: 228 QFTDLCVLLGCDYCDNIKGIGPKTA 252
>gi|330796677|ref|XP_003286392.1| hypothetical protein DICPUDRAFT_150348 [Dictyostelium purpureum]
gi|325083664|gb|EGC37111.1| hypothetical protein DICPUDRAFT_150348 [Dictyostelium purpureum]
Length = 916
Score = 76.3 bits (186), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 59/172 (34%), Positives = 89/172 (51%), Gaps = 15/172 (8%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFG-SNILLRHMTFSEARKLPVQEFHL--EK 117
AP EA+AQ + G+V A TED D + +G SN++L+ A+++ ++ +
Sbjct: 147 APYEADAQLTFLSITGQVDAIITEDSDLVAYGASNLILKMDKDGYAQEIKTEDLGSCKKD 206
Query: 118 VLEGMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENID------T 171
+ ++ + +CIL GCDY S+ G+G K + +L+K+HR IEK+ + + T
Sbjct: 207 GYDFIDFTQTMLRQMCILSGCDYLPSLPGMGLKTSFKLLKQHRDIEKVFKYLKREKPGFT 266
Query: 172 KKYTVPEGWLYKEARELFRHPEVADPETIEFIDLCILLGCDYC-DSIRGIGP 222
K+Y E YK A FRH V DP T + I L DY D I IGP
Sbjct: 267 KEY---EQQFYK-ADFTFRHQRVYDPVT-KSITTLFPLDKDYPEDEIDFIGP 313
Score = 55.1 bits (131), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 35/87 (40%), Positives = 47/87 (54%), Gaps = 18/87 (20%)
Query: 230 YSFID--------LCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENID------TK 275
Y FID +CIL GCDY S+ G+G K + +L+K+HR IEK+ + + TK
Sbjct: 208 YDFIDFTQTMLRQMCILSGCDYLPSLPGMGLKTSFKLLKQHRDIEKVFKYLKREKPGFTK 267
Query: 276 KYTVPEGWLYKEARELFRHPEIADPET 302
+Y E YK A FRH + DP T
Sbjct: 268 EY---EQQFYK-ADFTFRHQRVYDPVT 290
>gi|326506138|dbj|BAJ91308.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 547
Score = 76.3 bits (186), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 47/147 (31%), Positives = 78/147 (53%), Gaps = 12/147 (8%)
Query: 61 APCEAEAQCAAMVKA----GKVYATATEDMDALTFG-SNILLRHMTFSEARKLPVQEFHL 115
AP EA+AQ A + G + A TED D + +G + I+ + F + + E L
Sbjct: 150 APYEADAQLAYLATLDADQGGIAAVITEDSDLIAYGCTAIIFKMDRFGNGEEF-IMEKTL 208
Query: 116 EKVLEGM---ELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDT- 171
E V +G+ + F +C+L GCD+ S+ GIG KRA LI +H++I+ +L +
Sbjct: 209 ETVKDGLCFQDFDQNLFTGMCVLAGCDFLPSVPGIGTKRAYSLISKHKNIDLVLSTLKLD 268
Query: 172 KKYTVPEGWL--YKEARELFRHPEVAD 196
K+Y+VP+ ++ + + +F H V D
Sbjct: 269 KRYSVPDDYIDSFWKTLAVFNHARVYD 295
Score = 57.0 bits (136), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 47/77 (61%), Gaps = 3/77 (3%)
Query: 232 FIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDT-KKYTVPEGWL--YKEA 288
F +C+L GCD+ S+ GIG KRA LI +H++I+ +L + K+Y+VP+ ++ + +
Sbjct: 225 FTGMCVLAGCDFLPSVPGIGTKRAYSLISKHKNIDLVLSTLKLDKRYSVPDDYIDSFWKT 284
Query: 289 RELFRHPEIADPETIEL 305
+F H + D ++ L
Sbjct: 285 LAVFNHARVYDVKSKSL 301
>gi|363539876|ref|YP_004894560.1| mg509 gene product [Megavirus chiliensis]
gi|350611041|gb|AEQ32485.1| putative endonuclease of the xpg family [Megavirus chiliensis]
Length = 443
Score = 76.3 bits (186), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 43/127 (33%), Positives = 66/127 (51%), Gaps = 14/127 (11%)
Query: 61 APCEAEAQCAAMV----------KAGK----VYATATEDMDALTFGSNILLRHMTFSEAR 106
+P EA+ C+ + + GK V ++D D L G+ L + M +
Sbjct: 154 SPGEADVVCSWLASRVDPNYIDPETGKKKRYVTGVCSDDSDMLALGAPYLFKDMLKFMTK 213
Query: 107 KLPVQEFHLEKVLEGMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKIL 166
V L L+ L+ +F DLC+LLGCDYCD+I+GIGPK A ++IK+ S+E ++
Sbjct: 214 NKDVTVISLRTTLKSTGLTMRQFTDLCVLLGCDYCDNIKGIGPKTAYKMIKQLGSLENVI 273
Query: 167 ENIDTKK 173
+N KK
Sbjct: 274 KNDHEKK 280
Score = 69.3 bits (168), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 53/80 (66%)
Query: 319 KICIDASMSLYQFLIAVRSEGNQLMSVDGEPTSHLMGTFYRTIRLVEHGLKPIYVFDGKP 378
++ +D S+ ++Q +IA+RS G + + GE TSHL G Y+ + +++G+ PI VFDGK
Sbjct: 30 RVAVDMSLLIHQTVIAMRSNGRDMTNQKGELTSHLYGILYKMLTFLQNGMTPICVFDGKA 89
Query: 379 PTLKSGELNKRMEKREDAQK 398
P +K+ ++ R +++ A+K
Sbjct: 90 PEIKNKTVDIRRSRKDAAEK 109
Score = 62.0 bits (149), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 26/45 (57%), Positives = 36/45 (80%)
Query: 232 FIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKK 276
F DLC+LLGCDYCD+I+GIGPK A ++IK+ S+E +++N KK
Sbjct: 236 FTDLCVLLGCDYCDNIKGIGPKTAYKMIKQLGSLENVIKNDHEKK 280
Score = 52.0 bits (123), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 19/29 (65%), Positives = 26/29 (89%)
Query: 201 EFIDLCILLGCDYCDSIRGIGPKRAIELL 229
+F DLC+LLGCDYCD+I+GIGPK A +++
Sbjct: 235 QFTDLCVLLGCDYCDNIKGIGPKTAYKMI 263
>gi|389583279|dbj|GAB66014.1| endonuclease, partial [Plasmodium cynomolgi strain B]
Length = 434
Score = 76.3 bits (186), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 48/151 (31%), Positives = 84/151 (55%), Gaps = 6/151 (3%)
Query: 25 EDRIRNGAKKLLKAR-SSTTQGRLDSFFTIRREEKRKAPCEAEAQCAAMVKAGKVYATAT 83
ED I + KK + + +S T + ++ ++ + +AE +CA K +
Sbjct: 251 EDGIHDLFKKNIFIKINSKTANDIYNYLSLEKIPIFITKNDAEKECAIQCSHEKD-IVVS 309
Query: 84 EDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVLEGMELSHEEFIDLCILLGCDYCDS 143
+DMDAL FG+ L+R + + R + + +++L + +++E+FID CIL GCDY
Sbjct: 310 DDMDALAFGAPNLIRFIMNKKKRHI----INKDELLNELNINYEQFIDFCILSGCDYSAK 365
Query: 144 IRGIGPKRAIELIKEHRSIEKILENIDTKKY 174
I GIGP +A ++IK++++IE LE+ KY
Sbjct: 366 IPGIGPVKAHKIIKKYKTIETFLESSAFNKY 396
Score = 52.4 bits (124), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 24/46 (52%), Positives = 32/46 (69%)
Query: 232 FIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKY 277
FID CIL GCDY I GIGP +A ++IK++++IE LE+ KY
Sbjct: 351 FIDFCILSGCDYSAKIPGIGPVKAHKIIKKYKTIETFLESSAFNKY 396
Score = 40.8 bits (94), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 30/52 (57%), Gaps = 3/52 (5%)
Query: 181 LYKEARELFRHPEVADPETI---EFIDLCILLGCDYCDSIRGIGPKRAIELL 229
+ K+ R + E+ + I +FID CIL GCDY I GIGP +A +++
Sbjct: 327 MNKKKRHIINKDELLNELNINYEQFIDFCILSGCDYSAKIPGIGPVKAHKII 378
>gi|388854492|emb|CCF51879.1| related to EXO1-exonuclease which interacts with Msh2p [Ustilago
hordei]
Length = 814
Score = 76.3 bits (186), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 52/179 (29%), Positives = 84/179 (46%), Gaps = 33/179 (18%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVLE 120
AP EA+AQ A + K G + A ED D L FG N +L F L++
Sbjct: 146 APYEADAQLAYLEKCGAIDAVLMEDSDLLVFGCNTVL---------------FKLDQAGN 190
Query: 121 GMELSHEEFID---------------LCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKI 165
+E+ E F + + IL GCDY SI G+G K A L++ H++++K+
Sbjct: 191 AVEIKQERFTNRQIALSGWTAVEFRQMAILSGCDYLPSIVGMGLKNAHRLLRRHKTVDKV 250
Query: 166 LENIDTK-KYTVPEGWL--YKEARELFRHPEVADPETIEFIDLCILLGCDYCDSIRGIG 221
L+ + + K ++P + +++A F H V DP + + + L L + D + IG
Sbjct: 251 LQVVRLEGKMSIPPTYPSEFRKAELTFVHQRVFDPSSSKVVTLTPLPSGTHDDMLPFIG 309
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 47/78 (60%), Gaps = 3/78 (3%)
Query: 232 FIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTK-KYTVPEGWL--YKEA 288
F + IL GCDY SI G+G K A L++ H++++K+L+ + + K ++P + +++A
Sbjct: 214 FRQMAILSGCDYLPSIVGMGLKNAHRLLRRHKTVDKVLQVVRLEGKMSIPPTYPSEFRKA 273
Query: 289 RELFRHPEIADPETIELV 306
F H + DP + ++V
Sbjct: 274 ELTFVHQRVFDPSSSKVV 291
>gi|327409739|ref|YP_004347159.1| putative Flap endonuclease [Lausannevirus]
gi|326784913|gb|AEA07047.1| putative Flap endonuclease [Lausannevirus]
Length = 363
Score = 75.9 bits (185), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 54/146 (36%), Positives = 74/146 (50%), Gaps = 22/146 (15%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVLE 120
A E + AA GK++ ++ D D +G+ + + KL + H E+ LE
Sbjct: 186 AEGEGDGVLAAYAVHGKIFGVSSADTDCHAYGAPFAIPEIDVV-GEKLTL--VHREQYLE 242
Query: 121 GMELSHEEFIDLCILLGCDYCDSI-----------RGIGPKRAIELIKEHRSIEKI--LE 167
+ L+ E+F+DLCIL GCDY D RGIG K A++LIKEH SIEKI LE
Sbjct: 243 DLGLTKEQFLDLCILCGCDYNDRASFEAKTAGKRPRGIGCKTALKLIKEHGSIEKIGELE 302
Query: 168 NIDTKKYTVPEGWLYKEARELFRHPE 193
I+ Y+ RELFR P+
Sbjct: 303 GINIAPLN------YERCRELFRIPD 322
Score = 55.8 bits (133), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 40/95 (42%), Positives = 48/95 (50%), Gaps = 27/95 (28%)
Query: 232 FIDLCILLGCDYCDSI-----------RGIGPKRAIELIKEHRSIEKI--LENIDTKKYT 278
F+DLCIL GCDY D RGIG K A++LIKEH SIEKI LE I+
Sbjct: 251 FLDLCILCGCDYNDRASFEAKTAGKRPRGIGCKTALKLIKEHGSIEKIGELEGINIAPLN 310
Query: 279 VPEGWLYKEARELFRHPEIADPETIELVADVAPSS 313
Y+ RELFR P + + D+ P S
Sbjct: 311 ------YERCRELFRIP--------DKIEDIVPGS 331
>gi|359416291|ref|ZP_09208636.1| flap endonuclease-1 [Candidatus Haloredivivus sp. G17]
gi|358033351|gb|EHK01911.1| flap endonuclease-1 [Candidatus Haloredivivus sp. G17]
Length = 269
Score = 75.9 bits (185), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 43/96 (44%), Positives = 54/96 (56%), Gaps = 8/96 (8%)
Query: 291 LFRHPEIADPETIELVADVAPSSIRESRKICIDASMSLYQFLIAVRS-EGNQLMSVDGEP 349
+F E+ +PE IE S R I IDA +LYQFL +R +G L DG+
Sbjct: 123 VFSSGELIEPEEIEF-------SDLNDRVIAIDAMNTLYQFLSIIRQRDGTPLKDSDGDI 175
Query: 350 TSHLMGTFYRTIRLVEHGLKPIYVFDGKPPTLKSGE 385
TSHL G FYR I L+E ++P+YVFDG P LK E
Sbjct: 176 TSHLSGLFYRNINLLEKDIRPVYVFDGAIPDLKQKE 211
>gi|356528364|ref|XP_003532774.1| PREDICTED: exonuclease 1-like [Glycine max]
Length = 743
Score = 75.9 bits (185), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 55/170 (32%), Positives = 87/170 (51%), Gaps = 14/170 (8%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFG-SNILLRHMTFSEARKLPVQEFHLEKVL 119
AP EA+AQ + +G+V A TED D + FG I+ + F + +F +
Sbjct: 147 APYEADAQMTFLAISGQVDAVITEDSDLIPFGCPRIIFKMDKFGQG-----VQFQYSMLQ 201
Query: 120 EGMELSHEEF-----IDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKY 174
+ ELS E F +++CIL GCDY S+ G+G KRA IK+ RS +K+L+++
Sbjct: 202 KNKELSFEGFNRQMLLEMCILSGCDYLQSLPGMGLKRAHASIKKFRSYDKVLKHLRYSGV 261
Query: 175 TVPEGW--LYKEARELFRHPEVADPETIEFIDLCILLGCDYCDSIRGIGP 222
+VP + +K+A F++ V DP + L + D D + +GP
Sbjct: 262 SVPPFYEESFKKAIFTFQYQRVYDPINENIVHLSNIPD-DIGDELDFLGP 310
Score = 50.1 bits (118), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 46/77 (59%), Gaps = 2/77 (2%)
Query: 232 FIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGW--LYKEAR 289
+++CIL GCDY S+ G+G KRA IK+ RS +K+L+++ +VP + +K+A
Sbjct: 216 LLEMCILSGCDYLQSLPGMGLKRAHASIKKFRSYDKVLKHLRYSGVSVPPFYEESFKKAI 275
Query: 290 ELFRHPEIADPETIELV 306
F++ + DP +V
Sbjct: 276 FTFQYQRVYDPINENIV 292
>gi|328715848|ref|XP_001946726.2| PREDICTED: hypothetical protein LOC100169397 [Acyrthosiphon pisum]
Length = 951
Score = 75.9 bits (185), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 39/96 (40%), Positives = 56/96 (58%), Gaps = 3/96 (3%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVLE 120
AP EAEAQCA + K G+ T T+D D FG+N++ + F + +K V++F + +
Sbjct: 681 APMEAEAQCAFLEKIGRTEGTVTDDSDVWLFGANVVYKD--FFDNQKY-VKQFKSIDIKQ 737
Query: 121 GMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELI 156
LS FI L L+G DY + I GIGP AIE++
Sbjct: 738 QFALSRNSFIQLAFLVGSDYTNGIDGIGPVSAIEIL 773
Score = 54.3 bits (129), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 54/92 (58%), Gaps = 7/92 (7%)
Query: 316 ESRKICIDASMSLYQFLIAVRSEGNQLMSVDGEPTS-HLMGTFYRTIRLVEHGLKPIYVF 374
E++ + ID S+ +YQ + V+ S G T+ HL+ F+R +L+ +G+KPI+VF
Sbjct: 23 ENKVLSIDVSIWMYQIIKGVQE------SDHGATTNRHLIVMFHRICKLLFYGIKPIFVF 76
Query: 375 DGKPPTLKSGELNKRMEKREDAQKALAKAQEQ 406
DG P LK + +R ++ A+K+ K +E+
Sbjct: 77 DGGVPELKKITIAQRQAQKSRAKKSTGKTKEK 108
>gi|403348528|gb|EJY73701.1| XPG family protein [Oxytricha trifallax]
Length = 734
Score = 75.9 bits (185), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 50/149 (33%), Positives = 81/149 (54%), Gaps = 13/149 (8%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEA-RKLPVQEFHLEKVL 119
AP EA++Q A MVK G +ED D + +G LL + F+ + + +F +
Sbjct: 147 APYEADSQIAYMVKEGIADFAISEDSDLIAYGCPKLLMKLNFNGYCKVFSINDFKANNQI 206
Query: 120 EGMEL------SHEEFIDLCILLGCDYCDSIRGIGPKRAIEL-IKEHRSIEKILENIDTK 172
L S E+F+ +CI+ GC+Y SI+ +G K AI+L +K + +E++LE++ T
Sbjct: 207 TDQTLAYLQKTSREQFVQICIMAGCEYLPSIQQVGLKVAIKLFMKNNGDVEQVLESLKTN 266
Query: 173 KY---TVPEGWL--YKEARELFRHPEVAD 196
K VPEG+L K+ ++LF + V D
Sbjct: 267 KIFKDRVPEGYLSALKKVQQLFFYQTVFD 295
Score = 52.8 bits (125), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 51/82 (62%), Gaps = 6/82 (7%)
Query: 232 FIDLCILLGCDYCDSIRGIGPKRAIEL-IKEHRSIEKILENIDTKKY---TVPEGWL--Y 285
F+ +CI+ GC+Y SI+ +G K AI+L +K + +E++LE++ T K VPEG+L
Sbjct: 222 FVQICIMAGCEYLPSIQQVGLKVAIKLFMKNNGDVEQVLESLKTNKIFKDRVPEGYLSAL 281
Query: 286 KEARELFRHPEIADPETIELVA 307
K+ ++LF + + D +L +
Sbjct: 282 KKVQQLFFYQTVFDTRIGKLTS 303
>gi|356512555|ref|XP_003524984.1| PREDICTED: exonuclease 1-like [Glycine max]
Length = 481
Score = 75.9 bits (185), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 57/170 (33%), Positives = 89/170 (52%), Gaps = 14/170 (8%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFG-SNILLRHMTFSEARKLPVQEFHLEKVL 119
AP EA+AQ + +G+V A TED D + FG I+ + F + + Q+ L+K
Sbjct: 147 APYEADAQMTFLAISGQVDAVITEDSDLIPFGCPRIIFKMDKFGQGVQF--QDSMLQK-- 202
Query: 120 EGMELSHEEF-----IDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKY 174
ELS E F +++CIL GCDY S+ G+G KRA IK+ RS +K+L+++
Sbjct: 203 -NKELSFEGFNRQMLLEMCILSGCDYLQSLSGMGLKRAHASIKKFRSYDKVLKHLRYSGV 261
Query: 175 TVPEGW--LYKEARELFRHPEVADPETIEFIDLCILLGCDYCDSIRGIGP 222
+VP + +K+A F++ V DP + L + D D + +GP
Sbjct: 262 SVPPFYEESFKKAILTFQYQRVYDPINENIVHLSN-ISDDIGDELDFLGP 310
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 51/83 (61%), Gaps = 4/83 (4%)
Query: 232 FIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGW--LYKEAR 289
+++CIL GCDY S+ G+G KRA IK+ RS +K+L+++ +VP + +K+A
Sbjct: 216 LLEMCILSGCDYLQSLSGMGLKRAHASIKKFRSYDKVLKHLRYSGVSVPPFYEESFKKAI 275
Query: 290 ELFRHPEIADP--ETIELVADVA 310
F++ + DP E I +++++
Sbjct: 276 LTFQYQRVYDPINENIVHLSNIS 298
>gi|150399374|ref|YP_001323141.1| flap endonuclease-1 [Methanococcus vannielii SB]
gi|150012077|gb|ABR54529.1| XPG I [Methanococcus vannielii SB]
Length = 324
Score = 75.9 bits (185), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 45/135 (33%), Positives = 74/135 (54%), Gaps = 15/135 (11%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVLE 120
AP E EAQCA +VK+ ++D D++ +G+ +++++T S ++ L KVL
Sbjct: 149 APSEGEAQCAELVKSKNASFVVSQDYDSILYGAESVVKNITSSNK---SLELIELSKVLT 205
Query: 121 GMELSHEEFIDLCILLGCDYC-DSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEG 179
+ ++ E ID+ IL+G DY I+GIGPK+A E++K+ + +KY E
Sbjct: 206 ELNVNLLELIDVAILIGTDYNPGGIKGIGPKKAFEVVKKGQ----------MEKYAF-EI 254
Query: 180 WLYKEARELFRHPEV 194
Y E R++F P V
Sbjct: 255 QNYSEIRKIFDEPNV 269
Score = 64.7 bits (156), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 43/127 (33%), Positives = 69/127 (54%), Gaps = 9/127 (7%)
Query: 317 SRKICIDASMSLYQFLIAVR-SEGNQLMSVDGEPTSHLMGTFYRTIRLVEHGLKPIYVFD 375
++ IDA +YQFL ++R +G+ L + GE TS G FY+TI ++E+ + PI+VFD
Sbjct: 21 TKSAAIDAMNVIYQFLSSIRLKDGSPLKNRSGEITSTYNGIFYKTIYMLENEITPIWVFD 80
Query: 376 GKPPTLKSGELNKRMEKREDAQKALAKAQEQGKLKWSDPDEDGLVKYLCGDKNFAEDRIR 435
GK LK R + R++A + +A+EQ L + + KY NF + +
Sbjct: 81 GKSHDLKEKTKEDRRKLRQNALENYLEAKEQDNL-------ENMQKY-AKRANFLDKKTI 132
Query: 436 NGAKKLL 442
+K+LL
Sbjct: 133 ENSKRLL 139
Score = 41.6 bits (96), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 37/70 (52%), Gaps = 12/70 (17%)
Query: 229 LYSFIDLCILLGCDYC-DSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGWLYKE 287
L ID+ IL+G DY I+GIGPK+A E++K+ + +KY E Y E
Sbjct: 211 LLELIDVAILIGTDYNPGGIKGIGPKKAFEVVKKGQ----------MEKYAF-EIQNYSE 259
Query: 288 ARELFRHPEI 297
R++F P +
Sbjct: 260 IRKIFDEPNV 269
>gi|403371708|gb|EJY85737.1| XPG family protein [Oxytricha trifallax]
Length = 734
Score = 75.5 bits (184), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 50/149 (33%), Positives = 81/149 (54%), Gaps = 13/149 (8%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEA-RKLPVQEFHLEKVL 119
AP EA++Q A MVK G +ED D + +G LL + F+ + + +F +
Sbjct: 147 APYEADSQIAYMVKEGIADFAISEDSDLIAYGCPKLLMKLNFNGYCKVFSINDFKANNQI 206
Query: 120 EGMEL------SHEEFIDLCILLGCDYCDSIRGIGPKRAIEL-IKEHRSIEKILENIDTK 172
L S E+F+ +CI+ GC+Y SI+ +G K AI+L +K + +E++LE++ T
Sbjct: 207 TDQTLAYLQKTSREQFVQICIMAGCEYLPSIQQVGLKVAIKLFMKNNGDVEQVLESLKTN 266
Query: 173 KY---TVPEGWL--YKEARELFRHPEVAD 196
K VPEG+L K+ ++LF + V D
Sbjct: 267 KIFKDRVPEGYLSALKKVQQLFFYQTVFD 295
Score = 52.8 bits (125), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 51/82 (62%), Gaps = 6/82 (7%)
Query: 232 FIDLCILLGCDYCDSIRGIGPKRAIEL-IKEHRSIEKILENIDTKKY---TVPEGWL--Y 285
F+ +CI+ GC+Y SI+ +G K AI+L +K + +E++LE++ T K VPEG+L
Sbjct: 222 FVQICIMAGCEYLPSIQQVGLKVAIKLFMKNNGDVEQVLESLKTNKIFKDRVPEGYLSAL 281
Query: 286 KEARELFRHPEIADPETIELVA 307
K+ ++LF + + D +L +
Sbjct: 282 KKVQQLFFYQTVFDTRIGKLTS 303
>gi|150865308|ref|XP_001384465.2| hypothetical protein PICST_35911 [Scheffersomyces stipitis CBS
6054]
gi|149386564|gb|ABN66436.2| predicted protein [Scheffersomyces stipitis CBS 6054]
Length = 992
Score = 75.5 bits (184), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 44/116 (37%), Positives = 69/116 (59%), Gaps = 3/116 (2%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVLE 120
AP EAEAQCA +VK G V T+D D FG + ++M F++ K V+ + + V++
Sbjct: 746 APMEAEAQCAELVKIGLVDGIITDDSDCFLFGGTKVYKNM-FNQ--KQYVECYSQDDVVD 802
Query: 121 GMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTV 176
+ L+ + I+L +LLG DY + I+GIGP A+E++ E S++ + D K TV
Sbjct: 803 KIGLTRKNLIELALLLGSDYTEGIKGIGPVLAMEILAEFGSLKNFKKWFDEKTKTV 858
Score = 72.8 bits (177), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 42/93 (45%), Positives = 57/93 (61%), Gaps = 15/93 (16%)
Query: 318 RKICIDASMSLYQFLIAVR-SEGNQLMSVDGEPTSHLMGTFYRTIRLVEHGLKPIYVFDG 376
+K+ +DAS+ +YQFL AVR SEGN L P SH++G F R +L+ G+ PI+VFDG
Sbjct: 25 KKLAVDASIWIYQFLKAVRDSEGNSL------PQSHIVGFFRRICKLLYFGIFPIFVFDG 78
Query: 377 KPPTLKSGELNKRMEK--------REDAQKALA 401
P LK +N+R E+ R+ AQK LA
Sbjct: 79 GAPALKRETINQRRERRQGQAETTRQTAQKLLA 111
Score = 44.3 bits (103), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 31/49 (63%)
Query: 231 SFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTV 279
+ I+L +LLG DY + I+GIGP A+E++ E S++ + D K TV
Sbjct: 810 NLIELALLLGSDYTEGIKGIGPVLAMEILAEFGSLKNFKKWFDEKTKTV 858
Score = 42.4 bits (98), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 48/97 (49%), Gaps = 7/97 (7%)
Query: 202 FIDLCILLGCDYCDSIRGIGPKRAIELLYSFIDLCILLGCDYCDSIRGIGPKRAIELIKE 261
I+L +LLG DY + I+GIGP A+E+L F L + + + + + K+
Sbjct: 811 LIELALLLGSDYTEGIKGIGPVLAMEILAEFGSLKNFKKW-FDEKTKTVKSDK-----KD 864
Query: 262 HRSIEK-ILENIDTKKYTVPEGWLYKEARELFRHPEI 297
++EK +L I K +PE + + + HPE+
Sbjct: 865 QTALEKNLLGRIRNGKLFLPERFPDSVVFDAYEHPEV 901
>gi|395325520|gb|EJF57941.1| PIN domain-like protein [Dichomitus squalens LYAD-421 SS1]
Length = 606
Score = 75.5 bits (184), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 46/131 (35%), Positives = 72/131 (54%), Gaps = 9/131 (6%)
Query: 64 EAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVLEGME 123
E EA A++V G A+EDMD L + + LLR++ S+ P+ H ++V +
Sbjct: 425 EGEALAASLVVNGYADYVASEDMDVLVYDAP-LLRNIASSQD---PLFVVHPDEVRAALG 480
Query: 124 LSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGWLYK 183
L F+D +LLG D+ I+ IGP RA+ +++H SIE+ILE +P G +Y
Sbjct: 481 LDQTRFVDFALLLGTDFSQRIKNIGPARALAFMRQHGSIERILEQESKYPLRMPVG-MYL 539
Query: 184 E----ARELFR 190
E AR++F+
Sbjct: 540 EQISLARKVFQ 550
Score = 52.8 bits (125), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 40/66 (60%), Gaps = 5/66 (7%)
Query: 232 FIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGWLYKE---- 287
F+D +LLG D+ I+ IGP RA+ +++H SIE+ILE +P G +Y E
Sbjct: 486 FVDFALLLGTDFSQRIKNIGPARALAFMRQHGSIERILEQESKYPLRMPVG-MYLEQISL 544
Query: 288 ARELFR 293
AR++F+
Sbjct: 545 ARKVFQ 550
>gi|88603762|ref|YP_503940.1| flap endonuclease-1 [Methanospirillum hungatei JF-1]
gi|121721338|sp|Q2FNC9.1|FEN_METHJ RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|88189224|gb|ABD42221.1| flap endonuclease 1 [Methanospirillum hungatei JF-1]
Length = 333
Score = 75.5 bits (184), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 35/90 (38%), Positives = 57/90 (63%), Gaps = 1/90 (1%)
Query: 321 CIDASMSLYQFLIAVR-SEGNQLMSVDGEPTSHLMGTFYRTIRLVEHGLKPIYVFDGKPP 379
IDA +LYQFL +R +G LM G TSHL G F+RT + G++P+++FDGK P
Sbjct: 26 AIDAFNALYQFLSIIRQPDGTPLMDDSGRITSHLSGIFFRTANFLTQGIRPVFIFDGKSP 85
Query: 380 TLKSGELNKRMEKREDAQKALAKAQEQGKL 409
+K + +R + RE++++ +A+++G L
Sbjct: 86 EMKGRTIQERRDVREESKEKWDQAKKEGDL 115
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 49/151 (32%), Positives = 74/151 (49%), Gaps = 21/151 (13%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFH------ 114
AP E EAQ A MV G ++D D L FG+ +L+R++T S R+L ++
Sbjct: 150 APSEGEAQGAYMVLKGDADYVVSQDYDTLLFGTPVLVRNLTISGKRRLHGRQITVQPERI 209
Query: 115 -LEKVLEGMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKE---HRSIEKILENID 170
L VL ++++ E+ I++ IL G D+ IRGIG K ++ IK I + L + D
Sbjct: 210 VLSDVLSTLDITREQLIEIAILTGTDFNPGIRGIGAKTGLKKIKSGEFDSIIREKLPDFD 269
Query: 171 TKKYTVPEGWLYKEARELFRHPEVADPETIE 201
PE R F +P V D T++
Sbjct: 270 ------PE-----PVRSFFLNPPVTDSYTLD 289
>gi|403337691|gb|EJY68068.1| XPG family protein [Oxytricha trifallax]
Length = 719
Score = 75.5 bits (184), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 50/149 (33%), Positives = 81/149 (54%), Gaps = 13/149 (8%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEA-RKLPVQEFHLEKVL 119
AP EA++Q A MVK G +ED D + +G LL + F+ + + +F +
Sbjct: 147 APYEADSQIAYMVKEGIADFAISEDSDLIAYGCPKLLMKLNFNGYCKVFSINDFKANNQI 206
Query: 120 EGMEL------SHEEFIDLCILLGCDYCDSIRGIGPKRAIEL-IKEHRSIEKILENIDTK 172
L S E+F+ +CI+ GC+Y SI+ +G K AI+L +K + +E++LE++ T
Sbjct: 207 TDQTLAYLQKTSREQFVQICIMAGCEYLPSIQQVGLKVAIKLFMKNNGDVEQVLESLKTN 266
Query: 173 KY---TVPEGWL--YKEARELFRHPEVAD 196
K VPEG+L K+ ++LF + V D
Sbjct: 267 KIFKDRVPEGYLSALKKVQQLFFYQTVFD 295
Score = 52.4 bits (124), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 51/82 (62%), Gaps = 6/82 (7%)
Query: 232 FIDLCILLGCDYCDSIRGIGPKRAIEL-IKEHRSIEKILENIDTKKY---TVPEGWL--Y 285
F+ +CI+ GC+Y SI+ +G K AI+L +K + +E++LE++ T K VPEG+L
Sbjct: 222 FVQICIMAGCEYLPSIQQVGLKVAIKLFMKNNGDVEQVLESLKTNKIFKDRVPEGYLSAL 281
Query: 286 KEARELFRHPEIADPETIELVA 307
K+ ++LF + + D +L +
Sbjct: 282 KKVQQLFFYQTVFDTRIGKLTS 303
>gi|148270937|gb|ABQ53635.1| exonuclease [Cucumis melo]
Length = 336
Score = 75.5 bits (184), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 48/148 (32%), Positives = 76/148 (51%), Gaps = 3/148 (2%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFG-SNILLRHMTFSEARKLPVQEFHLEKVL 119
AP EA+AQ + + +V A TED D + FG I+ + F + + K L
Sbjct: 147 APYEADAQMTFLAISNQVDAVLTEDSDLIPFGCPRIIFKMDKFGQGVEFRYDMLQKNKDL 206
Query: 120 EGMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEG 179
+ + +++CIL GCDY S+ G+G KRA LIK+ S EK++ ++ +VP
Sbjct: 207 NLSGFTKQMILEMCILSGCDYLPSLPGMGLKRAHALIKKFLSYEKVIRHLRYSTVSVPHL 266
Query: 180 W--LYKEARELFRHPEVADPETIEFIDL 205
+ +K+A F+H V DP T + + L
Sbjct: 267 YEESFKKAILTFQHQRVYDPITEDIVHL 294
Score = 55.1 bits (131), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 47/76 (61%), Gaps = 2/76 (2%)
Query: 233 IDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGW--LYKEARE 290
+++CIL GCDY S+ G+G KRA LIK+ S EK++ ++ +VP + +K+A
Sbjct: 217 LEMCILSGCDYLPSLPGMGLKRAHALIKKFLSYEKVIRHLRYSTVSVPHLYEESFKKAIL 276
Query: 291 LFRHPEIADPETIELV 306
F+H + DP T ++V
Sbjct: 277 TFQHQRVYDPITEDIV 292
>gi|449459386|ref|XP_004147427.1| PREDICTED: exonuclease 1-like [Cucumis sativus]
Length = 685
Score = 75.5 bits (184), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 60/206 (29%), Positives = 96/206 (46%), Gaps = 10/206 (4%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFG-SNILLRHMTFSEARKLPVQEFHLEKVL 119
AP EA+AQ + + +V A TED D + FG I+ + F + + K L
Sbjct: 147 APYEADAQMTFLAISNQVDAVLTEDSDLIPFGCPRIIFKMDKFGQGVEFRYDMLQKNKDL 206
Query: 120 EGMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEG 179
+ + +++CIL GCDY S+ G+G KRA LIK+ S EK++ ++ VP
Sbjct: 207 NFSGFTKQMILEMCILSGCDYLPSLPGMGLKRAHALIKKFLSYEKVIRHLRYSTVAVPHL 266
Query: 180 W--LYKEARELFRHPEVADPETIEFIDLCILLGCDYC-DSIRGIGPKRAIELLYSF---- 232
+ +K+A F+H V DP T + + L + D+ D + +GP +
Sbjct: 267 YEESFKKAILTFQHQRVYDPITEDIVHLSQI--SDHIEDDLDFLGPSIPQHIAKGIAEGD 324
Query: 233 IDLCILLGCDYCDSIRGIGPKRAIEL 258
ID C L D+ G+ +R +L
Sbjct: 325 IDPCTNLPFQEQDTNTGVVHERPYKL 350
Score = 54.3 bits (129), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/77 (37%), Positives = 46/77 (59%), Gaps = 2/77 (2%)
Query: 232 FIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGW--LYKEAR 289
+++CIL GCDY S+ G+G KRA LIK+ S EK++ ++ VP + +K+A
Sbjct: 216 ILEMCILSGCDYLPSLPGMGLKRAHALIKKFLSYEKVIRHLRYSTVAVPHLYEESFKKAI 275
Query: 290 ELFRHPEIADPETIELV 306
F+H + DP T ++V
Sbjct: 276 LTFQHQRVYDPITEDIV 292
>gi|124802099|ref|XP_001347365.1| endonuclease, putative [Plasmodium falciparum 3D7]
gi|23494944|gb|AAN35278.1|AE014830_22 endonuclease, putative [Plasmodium falciparum 3D7]
Length = 388
Score = 75.5 bits (184), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 42/111 (37%), Positives = 67/111 (60%), Gaps = 5/111 (4%)
Query: 64 EAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVLEGME 123
+AE +CA + ++D DAL FG+ L+R +T + R + + E++L +
Sbjct: 245 DAEKECAIQCSHERD-IVVSDDTDALAFGAPNLIRFITNKKKRHI----INKEELLNELN 299
Query: 124 LSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKY 174
+++E+FID CIL GCDY I GIGP +A E+IK++++IE LE+ KY
Sbjct: 300 INYEQFIDFCILSGCDYSAKIPGIGPVKAHEIIKKYKTIETFLESNAFNKY 350
Score = 52.8 bits (125), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 25/46 (54%), Positives = 32/46 (69%)
Query: 232 FIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKY 277
FID CIL GCDY I GIGP +A E+IK++++IE LE+ KY
Sbjct: 305 FIDFCILSGCDYSAKIPGIGPVKAHEIIKKYKTIETFLESNAFNKY 350
Score = 43.1 bits (100), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 29/50 (58%), Gaps = 3/50 (6%)
Query: 183 KEARELFRHPEVADPETI---EFIDLCILLGCDYCDSIRGIGPKRAIELL 229
K+ R + E+ + I +FID CIL GCDY I GIGP +A E++
Sbjct: 283 KKKRHIINKEELLNELNINYEQFIDFCILSGCDYSAKIPGIGPVKAHEII 332
>gi|402466077|gb|EJW01645.1| hypothetical protein EDEG_03812 [Edhazardia aedis USNM 41457]
Length = 856
Score = 75.1 bits (183), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 42/121 (34%), Positives = 67/121 (55%), Gaps = 6/121 (4%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVLE 120
AP EA++QCA V A TED D FG + R+ F + + + + + K +
Sbjct: 658 APLEADSQCAYFSLKNIVDAVITEDNDIFLFGGKKIYRNY-FKNGKNIDLYDINEIKKI- 715
Query: 121 GMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGW 180
+S +E I + ++LG DYCD I+G G K++++LIK R++ KI EN +TK +P +
Sbjct: 716 ---ISRDEMIMISLILGSDYCDGIKGFGLKKSLDLIKYSRNLAKIAEN-ETKNPNIPTDY 771
Query: 181 L 181
Sbjct: 772 F 772
Score = 48.9 bits (115), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 35/53 (66%), Gaps = 1/53 (1%)
Query: 232 FIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGWL 284
I + ++LG DYCD I+G G K++++LIK R++ KI EN +TK +P +
Sbjct: 721 MIMISLILGSDYCDGIKGFGLKKSLDLIKYSRNLAKIAEN-ETKNPNIPTDYF 772
Score = 40.4 bits (93), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 30/47 (63%)
Query: 356 TFYRTIRLVEHGLKPIYVFDGKPPTLKSGELNKRMEKREDAQKALAK 402
T R ++L+ + KPI+VFDGK P LK+ + KR ++ ED +K K
Sbjct: 45 TIKRILKLLFYKNKPIFVFDGKTPHLKNRAIRKRQQQCEDTRKLAQK 91
>gi|302840229|ref|XP_002951670.1| nuclease, Rad2 family [Volvox carteri f. nagariensis]
gi|300262918|gb|EFJ47121.1| nuclease, Rad2 family [Volvox carteri f. nagariensis]
Length = 351
Score = 75.1 bits (183), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 43/140 (30%), Positives = 73/140 (52%), Gaps = 3/140 (2%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFG-SNILLRHMTFSEARKLPVQEFHLEKVL 119
AP EA+AQ + + G V+A TED D L +G +L + ++ + + L + +
Sbjct: 147 APYEADAQMSYLALRGDVHAVLTEDSDMLAYGCPRVLYKLDRGGSGEEVMLSDLPLVREI 206
Query: 120 EGMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEG 179
+H+ + +CIL GCD+ +I G+G K+A +I++HR K++ N+ + P G
Sbjct: 207 NMAGFNHDMLLQMCILAGCDFLPNIPGVGIKKAHAMIRKHRDFVKVVRNLHFNGTSPPPG 266
Query: 180 WLYKEARE--LFRHPEVADP 197
+ + R LFRH V P
Sbjct: 267 YEIRFQRTLWLFRHQRVFCP 286
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 38/65 (58%), Gaps = 2/65 (3%)
Query: 232 FIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGWLYKEARE- 290
+ +CIL GCD+ +I G+G K+A +I++HR K++ N+ + P G+ + R
Sbjct: 216 LLQMCILAGCDFLPNIPGVGIKKAHAMIRKHRDFVKVVRNLHFNGTSPPPGYEIRFQRTL 275
Query: 291 -LFRH 294
LFRH
Sbjct: 276 WLFRH 280
>gi|354547816|emb|CCE44551.1| hypothetical protein CPAR2_403540 [Candida parapsilosis]
Length = 994
Score = 75.1 bits (183), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 62/186 (33%), Positives = 89/186 (47%), Gaps = 36/186 (19%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVLE 120
AP EAEAQCA + K G V T+D D FG + + ++M FS+ + + E +L+ +E
Sbjct: 750 APMEAEAQCAELYKIGLVDGIITDDSDCFLFGGDRIYKNM-FSQKQFV---ECYLKNDIE 805
Query: 121 G-MELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRS------------------ 161
+ LS E I+L ILLG DY + I+GIGP A+E++ E S
Sbjct: 806 DKIGLSRENLIELAILLGSDYTEGIKGIGPVLAVEILAEFGSLQGFKKWFDEKTKTTKLD 865
Query: 162 ------IEKILEN-IDTKKYTVPEGWLYKEARELFRHPEVADPETIEFIDLCILLGCDYC 214
++K L N I K +P+ + K E ++HPEV D + EF G
Sbjct: 866 QGVLTPLQKNLTNRIKNGKLFLPDNFPDKVIFEAYQHPEV-DSDKSEF-----KWGIPNL 919
Query: 215 DSIRGI 220
D IR
Sbjct: 920 DQIRSF 925
Score = 70.1 bits (170), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 36/87 (41%), Positives = 55/87 (63%), Gaps = 7/87 (8%)
Query: 318 RKICIDASMSLYQFLIAVRS-EGNQLMSVDGEPTSHLMGTFYRTIRLVEHGLKPIYVFDG 376
+K+ +DAS+ +YQFL AVR EGN L P SH++G F R +L+ G++PI+VFDG
Sbjct: 25 KKLAVDASIWIYQFLKAVRDKEGNAL------PQSHIVGFFRRICKLLYFGIQPIFVFDG 78
Query: 377 KPPTLKSGELNKRMEKREDAQKALAKA 403
P LK +N+R +R+ ++ +A
Sbjct: 79 GVPVLKRQTINERKNRRQQNSESTRQA 105
Score = 43.9 bits (102), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 30/49 (61%)
Query: 231 SFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTV 279
+ I+L ILLG DY + I+GIGP A+E++ E S++ + D K T
Sbjct: 814 NLIELAILLGSDYTEGIKGIGPVLAVEILAEFGSLQGFKKWFDEKTKTT 862
Score = 43.1 bits (100), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 17/31 (54%), Positives = 22/31 (70%)
Query: 202 FIDLCILLGCDYCDSIRGIGPKRAIELLYSF 232
I+L ILLG DY + I+GIGP A+E+L F
Sbjct: 815 LIELAILLGSDYTEGIKGIGPVLAVEILAEF 845
>gi|385803787|ref|YP_005840187.1| flap endonuclease Fen1 [Haloquadratum walsbyi C23]
gi|339729279|emb|CCC40515.1| flap endonuclease Fen1 [Haloquadratum walsbyi C23]
Length = 326
Score = 75.1 bits (183), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 50/152 (32%), Positives = 73/152 (48%), Gaps = 9/152 (5%)
Query: 19 GDKNFAEDRIRNGAKKLLKARSSTTQGRLDSFFTIRREEKRKAPCEAEAQCAAMVKAGKV 78
GD+ A R+ ++L + TT+G L+ E AP E EAQ A M G V
Sbjct: 114 GDE-LAASRLEARTQRLTETIHETTRGLLNRLDVPIIE----APAEGEAQAAEMAIRGDV 168
Query: 79 YATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVLEGMELSHEEFIDLCILLGC 138
+ED D L FG+ +R +T +L L+ L+ L+ E+ +D+ IL G
Sbjct: 169 DYVGSEDYDTLLFGAPYTVRQLTSKGDPEL----MDLQTTLKNQNLTREQLVDVAILCGT 224
Query: 139 DYCDSIRGIGPKRAIELIKEHRSIEKILENID 170
D+ D I GIGP AI I +H + +L+ D
Sbjct: 225 DFNDGISGIGPATAISAINDHGDLWSVLDARD 256
Score = 47.4 bits (111), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 48/90 (53%), Gaps = 2/90 (2%)
Query: 320 ICIDASMSLYQFLIA-VRSEGNQLMSVD-GEPTSHLMGTFYRTIRLVEHGLKPIYVFDGK 377
I +DA LY++L V+ + + + G ++L+G + EH L P++VFDG
Sbjct: 25 IAVDAHNWLYRYLTTTVKFTSDAAYTTESGVEVANLIGVVQGLPKFFEHDLTPVFVFDGG 84
Query: 378 PPTLKSGELNKRMEKREDAQKALAKAQEQG 407
LK E+ +R RE+A + A A+E+G
Sbjct: 85 VTELKDEEVQERRVAREEAVELQAAAEERG 114
>gi|393243595|gb|EJD51109.1| PIN domain-like protein [Auricularia delicata TFB-10046 SS5]
Length = 645
Score = 75.1 bits (183), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 41/106 (38%), Positives = 60/106 (56%), Gaps = 4/106 (3%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVLE 120
P E EA +A+V AG A+ED D L + + LLR +T + P+ +V E
Sbjct: 435 GPHEGEAFASALVHAGVADYVASEDTDVLVYEAP-LLRGLT---NLRSPLTVISGSEVRE 490
Query: 121 GMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKIL 166
+ LS F+D +LLG D+ +RG+GP R+I LIK+H +IE +L
Sbjct: 491 ALGLSRAAFVDFALLLGTDFSRRLRGLGPMRSIALIKQHETIEAVL 536
Score = 52.4 bits (124), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 19/39 (48%), Positives = 29/39 (74%)
Query: 231 SFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKIL 269
+F+D +LLG D+ +RG+GP R+I LIK+H +IE +L
Sbjct: 498 AFVDFALLLGTDFSRRLRGLGPMRSIALIKQHETIEAVL 536
>gi|110668340|ref|YP_658151.1| flap endonuclease-1 [Haloquadratum walsbyi DSM 16790]
gi|121684788|sp|Q18HK0.1|FEN_HALWD RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|109626087|emb|CAJ52538.1| flap endonuclease Fen1 [Haloquadratum walsbyi DSM 16790]
Length = 326
Score = 75.1 bits (183), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 50/152 (32%), Positives = 73/152 (48%), Gaps = 9/152 (5%)
Query: 19 GDKNFAEDRIRNGAKKLLKARSSTTQGRLDSFFTIRREEKRKAPCEAEAQCAAMVKAGKV 78
GD+ A R+ ++L + TT+G L+ E AP E EAQ A M G V
Sbjct: 114 GDE-LAASRLEARTQRLTETIHETTRGLLNRLDVPIIE----APAEGEAQAAEMAIRGDV 168
Query: 79 YATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVLEGMELSHEEFIDLCILLGC 138
+ED D L FG+ +R +T +L L+ L+ L+ E+ +D+ IL G
Sbjct: 169 DYVGSEDYDTLLFGAPYTVRQLTSKGDPEL----MDLQTTLKNQNLTREQLVDVAILCGT 224
Query: 139 DYCDSIRGIGPKRAIELIKEHRSIEKILENID 170
D+ D I GIGP AI I +H + +L+ D
Sbjct: 225 DFNDGISGIGPATAISAINDHGDLWSVLDARD 256
Score = 47.4 bits (111), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 48/90 (53%), Gaps = 2/90 (2%)
Query: 320 ICIDASMSLYQFLIA-VRSEGNQLMSVD-GEPTSHLMGTFYRTIRLVEHGLKPIYVFDGK 377
I +DA LY++L V+ + + + G ++L+G + EH L P++VFDG
Sbjct: 25 IAVDAHNWLYRYLTTTVKFTSDAAYTTESGVEVANLIGVVQGLPKFFEHDLTPVFVFDGG 84
Query: 378 PPTLKSGELNKRMEKREDAQKALAKAQEQG 407
LK E+ +R RE+A + A A+E+G
Sbjct: 85 VTELKDEEVQERRVAREEAVELQAAAEERG 114
>gi|257077017|ref|ZP_05571378.1| flap endonuclease-1 [Ferroplasma acidarmanus fer1]
Length = 339
Score = 75.1 bits (183), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 46/152 (30%), Positives = 78/152 (51%), Gaps = 15/152 (9%)
Query: 60 KAPCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLP---------V 110
+AP E EAQ + M K G V + ++D D L G+ +LR+ T R++
Sbjct: 148 QAPSEGEAQASYMSKVGAVDSVISQDYDCLLLGARRVLRNFTMYGRRRISGTGKFINITP 207
Query: 111 QEFHLEKVLEGMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENID 170
+ L++ L+ + ++ ++ I + IL+G D+ IRGIG K + LIK++ IE +L+
Sbjct: 208 EIIDLKENLDNLGITQDQLIGIGILVGTDFNPGIRGIGAKTGLSLIKKYGDIESVLKQ-- 265
Query: 171 TKKYTVPEGWLYKEARELFRHPEVADPETIEF 202
K T+ E +E F +P V D ++F
Sbjct: 266 -KNKTIDN---LDEIKEFFLNPPVEDTGELKF 293
Score = 72.0 bits (175), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 53/134 (39%), Positives = 70/134 (52%), Gaps = 11/134 (8%)
Query: 312 SSIRESRKIC--IDASMSLYQFLIAVRSE-GNQLMSVDGEPTSHLMGTFYRTIRLVEHGL 368
+SIRE+ I IDA +YQFL ++R E G L G TSHL G FYRT L+E+ +
Sbjct: 14 TSIRENGGITVSIDAFNIIYQFLSSIRGEDGEPLKDEHGNITSHLSGIFYRTATLLENNI 73
Query: 369 KPIYVFDGKPPTLKSGELNKRMEKREDAQKALAKAQEQGKLKWSDPDEDGLVKYLCGDKN 428
KP+Y FDGKP LK L +R +E L A E D ++ +K L N
Sbjct: 74 KPVYSFDGKPYRLKDETLKERKAIKEKNIAELNLAMEN-----KDAEK---IKTLSSRIN 125
Query: 429 FAEDRIRNGAKKLL 442
+ I + +KKLL
Sbjct: 126 YITADIVSESKKLL 139
Score = 43.1 bits (100), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 36/68 (52%), Gaps = 6/68 (8%)
Query: 232 FIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGWLYKEAREL 291
I + IL+G D+ IRGIG K + LIK++ IE +L+ K T+ E +E
Sbjct: 226 LIGIGILVGTDFNPGIRGIGAKTGLSLIKKYGDIESVLKQ---KNKTIDN---LDEIKEF 279
Query: 292 FRHPEIAD 299
F +P + D
Sbjct: 280 FLNPPVED 287
Score = 39.7 bits (91), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 34/55 (61%)
Query: 403 AQEQGKLKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSTTTQGRLDSFF 457
++ G+LK++ P + +++YLC + +F+E+RI + ++ K S Q LD +F
Sbjct: 285 VEDTGELKFAPPYREKIIEYLCAEHSFSENRINSILDRIEKNYSGANQSSLDKYF 339
>gi|290997069|ref|XP_002681104.1| predicted protein [Naegleria gruberi]
gi|284094727|gb|EFC48360.1| predicted protein [Naegleria gruberi]
Length = 382
Score = 75.1 bits (183), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 39/114 (34%), Positives = 63/114 (55%), Gaps = 5/114 (4%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFGS-NILLRHMTFSEARKLPVQEFHLEKVL 119
AP EA+AQ A + + G V TED D + +G+ I + + L + + +
Sbjct: 147 APYEADAQLAHLARTGYVSCVITEDSDLIPYGAPKIFFKMDKYGHGTLLNLADINHTPTA 206
Query: 120 EGM----ELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENI 169
G + +H+ + +CIL GCDY S+ GIGPK A ++IKE+R++ KI+E +
Sbjct: 207 NGSTDFSKFTHDMMMRMCILSGCDYLSSLSGIGPKTAYKIIKENRTVPKIMEAL 260
Score = 52.0 bits (123), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 21/38 (55%), Positives = 30/38 (78%)
Query: 235 LCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENI 272
+CIL GCDY S+ GIGPK A ++IKE+R++ KI+E +
Sbjct: 223 MCILSGCDYLSSLSGIGPKTAYKIIKENRTVPKIMEAL 260
>gi|302678463|ref|XP_003028914.1| hypothetical protein SCHCODRAFT_59252 [Schizophyllum commune H4-8]
gi|300102603|gb|EFI94011.1| hypothetical protein SCHCODRAFT_59252 [Schizophyllum commune H4-8]
Length = 277
Score = 75.1 bits (183), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 57/182 (31%), Positives = 89/182 (48%), Gaps = 10/182 (5%)
Query: 34 KLLKARSSTTQGRLDSFFTIRREEKR--KAPCEAEAQCAAMVKAGKVYATATEDMDALTF 91
+L A+ +Q R +R E + AP EA+AQ A + + G V+A TED D L F
Sbjct: 79 NMLAAQGKHSQARDQVIKALRIENVKYVVAPYEADAQLAFLERTGAVHAILTEDSDLLVF 138
Query: 92 GSNILLRHMTFSEARKLPVQEFHLEKVL--EGMEL---SHEEFIDLCILLGCDYCDSIRG 146
G +L + ++ + + V G+ L + +F + IL GCDY SI G
Sbjct: 139 GCKNILFKLDHAQCTVVSISRSDFASVTACNGVSLVGWTDAQFRTMAILSGCDYLPSIPG 198
Query: 147 IGPKRAIELIKEHRSIEKILENIDTK-KYTVPEGWL--YKEARELFRHPEVADPETIEFI 203
IG K A ++ H++ E+ ++ I + K +P G++ +K A + F H V DP E I
Sbjct: 199 IGLKTAGVYVRRHKTAEQCVKVIAREGKKRIPMGYVSRFKLAEQCFLHQRVYDPARDELI 258
Query: 204 DL 205
L
Sbjct: 259 HL 260
Score = 46.6 bits (109), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 50/96 (52%), Gaps = 8/96 (8%)
Query: 214 CDSIRGIGPKRAIELLYSFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENID 273
C+ + +G A F + IL GCDY SI GIG K A ++ H++ E+ ++ I
Sbjct: 168 CNGVSLVGWTDA-----QFRTMAILSGCDYLPSIPGIGLKTAGVYVRRHKTAEQCVKVIA 222
Query: 274 TK-KYTVPEGWL--YKEARELFRHPEIADPETIELV 306
+ K +P G++ +K A + F H + DP EL+
Sbjct: 223 REGKKRIPMGYVSRFKLAEQCFLHQRVYDPARDELI 258
>gi|297845884|ref|XP_002890823.1| hypothetical protein ARALYDRAFT_473168 [Arabidopsis lyrata subsp.
lyrata]
gi|297336665|gb|EFH67082.1| hypothetical protein ARALYDRAFT_473168 [Arabidopsis lyrata subsp.
lyrata]
Length = 744
Score = 75.1 bits (183), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 50/158 (31%), Positives = 78/158 (49%), Gaps = 6/158 (3%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFG-SNILLRHMTFSEARKLPVQEFHLEKVL 119
AP EA+AQ + +V A TED D + FG I+ + F + + K L
Sbjct: 147 APYEADAQMTFLAITKQVDAIITEDSDLIPFGCPRIIFKMDKFGHGVEFQASKLPKNKDL 206
Query: 120 EGMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEG 179
S + +++CIL GCDY S+ G+G KRA LI + +S +++++++ +VP
Sbjct: 207 SLSGFSSQMLLEMCILSGCDYLQSLPGMGLKRAHALITKFKSYDRVIKHLKYSTVSVPPL 266
Query: 180 W--LYKEARELFRHPEVADPET---IEFIDLCILLGCD 212
+ +K A F+H V DP T I D+ LG D
Sbjct: 267 YEESFKRALLTFKHQRVYDPNTEDIIHLSDISDYLGED 304
Score = 53.5 bits (127), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 47/77 (61%), Gaps = 2/77 (2%)
Query: 232 FIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGW--LYKEAR 289
+++CIL GCDY S+ G+G KRA LI + +S +++++++ +VP + +K A
Sbjct: 216 LLEMCILSGCDYLQSLPGMGLKRAHALITKFKSYDRVIKHLKYSTVSVPPLYEESFKRAL 275
Query: 290 ELFRHPEIADPETIELV 306
F+H + DP T +++
Sbjct: 276 LTFKHQRVYDPNTEDII 292
Score = 39.7 bits (91), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 25/61 (40%), Positives = 33/61 (54%), Gaps = 4/61 (6%)
Query: 347 GEPTS-HLMGTFYRTIRLVEHGLKPIYVFDGKPPTLKSGELNKRMEKREDAQKALAKAQE 405
G PT H+ +R L HG+KPI VFDG P +K + NKR R++ LA+A E
Sbjct: 49 GLPTKRHIQYCMHRVNLLRHHGVKPIMVFDGGPLPMKLEQENKRARSRKE---NLARALE 105
Query: 406 Q 406
Sbjct: 106 H 106
>gi|449680108|ref|XP_002160163.2| PREDICTED: exonuclease 1-like [Hydra magnipapillata]
Length = 687
Score = 74.7 bits (182), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 48/142 (33%), Positives = 83/142 (58%), Gaps = 6/142 (4%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKV-- 118
AP EA+AQ A ++K+G T +ED D L +G N +L M+ SE + V +L KV
Sbjct: 147 APYEADAQLAFLMKSGITQLTISEDSDLLLYGCNKVLYKMS-SEGDGMLVDIDNLSKVRS 205
Query: 119 LEGMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENID-TKKYTVP 177
++ + + F +C+L GCDY SI+G+G K+A + +K H +I++ + + +Y+VP
Sbjct: 206 VQLSSFTLDNFRQMCMLSGCDYLPSIKGMGLKKAHQALKRHSNIKQCIRSFKCNPQYSVP 265
Query: 178 EGW--LYKEARELFRHPEVADP 197
+ + + +A +F++ V DP
Sbjct: 266 DEYEDNFCKAELVFKYQLVFDP 287
Score = 47.8 bits (112), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 54/91 (59%), Gaps = 7/91 (7%)
Query: 217 IRGIGPKRAIEL----LYSFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENI 272
I + R+++L L +F +C+L GCDY SI+G+G K+A + +K H +I++ + +
Sbjct: 197 IDNLSKVRSVQLSSFTLDNFRQMCMLSGCDYLPSIKGMGLKKAHQALKRHSNIKQCIRSF 256
Query: 273 D-TKKYTVPEGW--LYKEARELFRHPEIADP 300
+Y+VP+ + + +A +F++ + DP
Sbjct: 257 KCNPQYSVPDEYEDNFCKAELVFKYQLVFDP 287
>gi|164449252|gb|ABY56082.1| exonuclease [Cucumis sativus]
Length = 336
Score = 74.7 bits (182), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 48/148 (32%), Positives = 75/148 (50%), Gaps = 3/148 (2%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFG-SNILLRHMTFSEARKLPVQEFHLEKVL 119
AP EA+AQ + + +V A TED D + FG I+ + F + + K L
Sbjct: 147 APYEADAQMTFLAISNQVDAVLTEDSDLIPFGCPRIIFKMDKFGQGVEFRYDMLQKNKDL 206
Query: 120 EGMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEG 179
+ + +++CIL GCDY S+ G+G KRA LIK+ S EK++ ++ VP
Sbjct: 207 NFSGFTKQMILEMCILSGCDYLPSLPGMGLKRAHALIKKFLSYEKVIRHLRYSTVAVPHL 266
Query: 180 W--LYKEARELFRHPEVADPETIEFIDL 205
+ +K+A F+H V DP T + + L
Sbjct: 267 YEESFKKAILTFQHQRVYDPITEDIVHL 294
Score = 54.3 bits (129), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 46/76 (60%), Gaps = 2/76 (2%)
Query: 233 IDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGW--LYKEARE 290
+++CIL GCDY S+ G+G KRA LIK+ S EK++ ++ VP + +K+A
Sbjct: 217 LEMCILSGCDYLPSLPGMGLKRAHALIKKFLSYEKVIRHLRYSTVAVPHLYEESFKKAIL 276
Query: 291 LFRHPEIADPETIELV 306
F+H + DP T ++V
Sbjct: 277 TFQHQRVYDPITEDIV 292
>gi|148508143|gb|ABQ75935.1| flap structure-specific endonuclease [uncultured haloarchaeon]
Length = 337
Score = 74.7 bits (182), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 50/152 (32%), Positives = 73/152 (48%), Gaps = 9/152 (5%)
Query: 19 GDKNFAEDRIRNGAKKLLKARSSTTQGRLDSFFTIRREEKRKAPCEAEAQCAAMVKAGKV 78
GD+ A R+ ++L + TT+G L+ E AP E EAQ A M G V
Sbjct: 125 GDE-LAASRLEARTQRLTETIHETTRGLLNRLDVPIIE----APAEGEAQAAEMAIRGDV 179
Query: 79 YATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVLEGMELSHEEFIDLCILLGC 138
+ED D L FG+ +R +T +L L+ L+ L+ E+ +D+ IL G
Sbjct: 180 DYVGSEDYDTLLFGAPYTVRQLTSKGDPEL----MDLQTTLKNQNLTREQLVDVAILCGT 235
Query: 139 DYCDSIRGIGPKRAIELIKEHRSIEKILENID 170
D+ D I GIGP AI I +H + +L+ D
Sbjct: 236 DFNDGISGIGPATAISAINDHGDLWSVLDARD 267
Score = 47.4 bits (111), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 48/90 (53%), Gaps = 2/90 (2%)
Query: 320 ICIDASMSLYQFLIA-VRSEGNQLMSVD-GEPTSHLMGTFYRTIRLVEHGLKPIYVFDGK 377
I +DA LY++L V+ + + + G ++L+G + EH L P++VFDG
Sbjct: 36 IAVDAHNWLYRYLTTTVKFTSDAAYTTESGVEVANLIGVVQGLPKFFEHDLTPVFVFDGG 95
Query: 378 PPTLKSGELNKRMEKREDAQKALAKAQEQG 407
LK E+ +R RE+A + A A+E+G
Sbjct: 96 VTELKDEEVQERRVAREEAVELQAAAEERG 125
>gi|145341014|ref|XP_001415611.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144575834|gb|ABO93903.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 330
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 60/219 (27%), Positives = 101/219 (46%), Gaps = 24/219 (10%)
Query: 17 LCGDKNFAEDRIRNGAKKLLKARSSTTQGRLDSF--FTIR-----------------RE- 56
L G N R RN ++ L KA++ QG + F +R RE
Sbjct: 83 LPGKANEEAQRRRNRSEALAKAKAHARQGNASAANDFYVRAVDITPEMAREVIEALAREG 142
Query: 57 -EKRKAPCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTF-SEARKLPVQEFH 114
E AP EA+AQ A +VK G V TED D + G + M ++ +E
Sbjct: 143 FESLTAPYEADAQMAYLVKNGFVAGVITEDSDLIAHGCRSVFTKMAGDGSGIEIRFEELG 202
Query: 115 LEKVLEGMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKY 174
+ L + + + F+++C+L GCDY S+ G+G K+A LI+ ++ K+L ++ +
Sbjct: 203 RNRGLSFVGFTPDMFLEMCVLSGCDYLPSLNGVGVKKAHSLIRRFKTYNKVLRHMKFEGI 262
Query: 175 TVPEGW--LYKEARELFRHPEVADPETIEFIDLCILLGC 211
VP+ + + +A F++ V P+ E ++L +G
Sbjct: 263 AVPKDYESRFVDALLTFKYSWVYCPQRREIVNLNDPVGV 301
Score = 48.1 bits (113), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 46/77 (59%), Gaps = 2/77 (2%)
Query: 232 FIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGW--LYKEAR 289
F+++C+L GCDY S+ G+G K+A LI+ ++ K+L ++ + VP+ + + +A
Sbjct: 217 FLEMCVLSGCDYLPSLNGVGVKKAHSLIRRFKTYNKVLRHMKFEGIAVPKDYESRFVDAL 276
Query: 290 ELFRHPEIADPETIELV 306
F++ + P+ E+V
Sbjct: 277 LTFKYSWVYCPQRREIV 293
>gi|392577150|gb|EIW70280.1| hypothetical protein TREMEDRAFT_43853 [Tremella mesenterica DSM
1558]
Length = 361
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 47/152 (30%), Positives = 75/152 (49%), Gaps = 11/152 (7%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVLE 120
AP EA+AQ + + G V TED D L FG + + F H E++
Sbjct: 147 APYEADAQLCFLEREGWVDGIITEDSDLLVFGC----KQVVFKLDHNGQCVWIHRERLAS 202
Query: 121 GMELSHEEFID-----LCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYT 175
+ + D + +L GCDY DSI+GIG K A L+++H+++EK+L+N+
Sbjct: 203 IRDFPMHGWTDHHFRRMAMLSGCDYLDSIQGIGIKTAHRLLRKHKTVEKVLQNVRLDGMN 262
Query: 176 VPEGW--LYKEARELFRHPEVADPETIEFIDL 205
VP+ + ++ +A F H V DP + + L
Sbjct: 263 VPKDYVKMFNQAELAFIHQRVYDPGSKRLVPL 294
Score = 62.4 bits (150), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 49/79 (62%), Gaps = 2/79 (2%)
Query: 230 YSFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGW--LYKE 287
+ F + +L GCDY DSI+GIG K A L+++H+++EK+L+N+ VP+ + ++ +
Sbjct: 214 HHFRRMAMLSGCDYLDSIQGIGIKTAHRLLRKHKTVEKVLQNVRLDGMNVPKDYVKMFNQ 273
Query: 288 ARELFRHPEIADPETIELV 306
A F H + DP + LV
Sbjct: 274 AELAFIHQRVYDPGSKRLV 292
>gi|76802527|ref|YP_327535.1| flap endonuclease-1 [Natronomonas pharaonis DSM 2160]
gi|121696716|sp|Q3IPG8.1|FEN_NATPD RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|76558392|emb|CAI49983.1| flap endonuclease Fen1 [Natronomonas pharaonis DSM 2160]
Length = 328
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 46/135 (34%), Positives = 65/135 (48%), Gaps = 10/135 (7%)
Query: 60 KAPCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVL 119
+AP E EAQ A M + G +ED DAL G+ LR +T + + E L
Sbjct: 152 EAPAEGEAQAAHMARRGDADYVGSEDYDALLLGAPYTLRGLTSNGDPEC----MDFEATL 207
Query: 120 EGMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEG 179
+LS E +D IL+G D+ + + G+GPK A++LI EH + +L D +P
Sbjct: 208 STHDLSWEGLVDAAILMGTDFNEGLSGVGPKTAVKLIHEHGDLRSVLAARDDD---IPHA 264
Query: 180 WLYKEARELFRHPEV 194
RELF P V
Sbjct: 265 ---DRIRELFLDPAV 276
Score = 53.1 bits (126), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 49/91 (53%), Gaps = 6/91 (6%)
Query: 320 ICIDASMSLYQFLIAV----RSEGNQLMSVDGEPTSHLMGTFYRTIRLVEHGLKPIYVFD 375
+ +DA LY++L RSE + DGE ++L+G + EH + P++VFD
Sbjct: 25 VAVDAHNWLYRYLTTTVKFTRSEA--YTTADGEEVANLIGVVQGLPKFFEHDVTPVFVFD 82
Query: 376 GKPPTLKSGELNKRMEKREDAQKALAKAQEQ 406
G LK+ E+ KR ++RE + L A+E+
Sbjct: 83 GGVSDLKADEVEKRRDQRERYEAQLEAAKER 113
Score = 46.2 bits (108), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 34/67 (50%), Gaps = 6/67 (8%)
Query: 231 SFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGWLYKEARE 290
+D IL+G D+ + + G+GPK A++LI EH + +L D +P RE
Sbjct: 216 GLVDAAILMGTDFNEGLSGVGPKTAVKLIHEHGDLRSVLAARDDD---IPHA---DRIRE 269
Query: 291 LFRHPEI 297
LF P +
Sbjct: 270 LFLDPAV 276
>gi|19113794|ref|NP_592882.1| Fen1 family nuclease, XP-G family (predicted) [Schizosaccharomyces
pombe 972h-]
gi|1175380|sp|Q09708.1|YAGG_SCHPO RecName: Full=Uncharacterized protein C12G12.16c
gi|929887|emb|CAA90586.1| Fen1 family nuclease, XP-G family (predicted) [Schizosaccharomyces
pombe]
Length = 496
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 40/130 (30%), Positives = 74/130 (56%), Gaps = 3/130 (2%)
Query: 63 CEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVLEGM 122
EAEA +A+ + YA AT+D D L GS+++ + ++ LP+Q K+ + +
Sbjct: 299 VEAEAFASAISQNNLAYAVATQDTDVLLLGSSMISNFLDLNDNFHLPLQIMDPRKIAQEL 358
Query: 123 ELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDT-KKYTVPEGWL 181
L+ + F D C++ G D+ I IGP RA++LI+ + + +L+ ++ +KY +P ++
Sbjct: 359 NLTFDGFQDYCLMCGTDFTSRIPKIGPVRALKLIRYYGNAFDVLKALNVEEKYIIPTDYI 418
Query: 182 YK--EARELF 189
K A++LF
Sbjct: 419 KKFLTAKKLF 428
Score = 39.7 bits (91), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 39/64 (60%), Gaps = 3/64 (4%)
Query: 232 FIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDT-KKYTVPEGWLYK--EA 288
F D C++ G D+ I IGP RA++LI+ + + +L+ ++ +KY +P ++ K A
Sbjct: 365 FQDYCLMCGTDFTSRIPKIGPVRALKLIRYYGNAFDVLKALNVEEKYIIPTDYIKKFLTA 424
Query: 289 RELF 292
++LF
Sbjct: 425 KKLF 428
>gi|448530440|ref|XP_003870064.1| Rad2 protein [Candida orthopsilosis Co 90-125]
gi|380354418|emb|CCG23933.1| Rad2 protein [Candida orthopsilosis]
Length = 995
Score = 74.3 bits (181), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 57/185 (30%), Positives = 86/185 (46%), Gaps = 34/185 (18%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVLE 120
AP EAEAQCA + + G V T+D D FG + + ++M F++ K V+ + + + +
Sbjct: 751 APMEAEAQCAELFRIGLVDGIITDDSDCFLFGGDRIYKNM-FNQ--KQFVECYFKDDIED 807
Query: 121 GMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYT----- 175
+ LS E I+L ILLG DY I+GIGP A+E++ E S+++ D K T
Sbjct: 808 RIGLSRENLIELAILLGSDYTQGIKGIGPVLAVEILAEFGSLKRFKSWFDEKTKTTKLDQ 867
Query: 176 --------------------VPEGWLYKEARELFRHPEVADPETIEFIDLCILLGCDYCD 215
+P+ + K E ++HPEV D + EF G D
Sbjct: 868 VTLTPLQRNLTNRIKNGKLYLPDNFPDKVIFEAYQHPEV-DSDKSEF-----KWGIPNLD 921
Query: 216 SIRGI 220
IR
Sbjct: 922 QIRSF 926
Score = 71.2 bits (173), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 41/93 (44%), Positives = 56/93 (60%), Gaps = 15/93 (16%)
Query: 318 RKICIDASMSLYQFLIAVRS-EGNQLMSVDGEPTSHLMGTFYRTIRLVEHGLKPIYVFDG 376
+K+ +DAS+ +YQFL AVR EGN L P SH++G F R +L+ G++PI+VFDG
Sbjct: 25 KKLAVDASIWIYQFLKAVRDKEGNAL------PQSHIVGFFRRICKLLYFGIQPIFVFDG 78
Query: 377 KPPTLKSGELNKRMEK--------REDAQKALA 401
P LK +N+R + RE AQK LA
Sbjct: 79 GVPVLKRQTINERKNRRQQNSESTRETAQKLLA 111
Score = 44.3 bits (103), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 45/96 (46%), Gaps = 5/96 (5%)
Query: 202 FIDLCILLGCDYCDSIRGIGPKRAIELLYSFIDLCILLGCDYCDSIRGIGPKRAIELIKE 261
I+L ILLG DY I+GIGP A+E+L F L + D + L
Sbjct: 816 LIELAILLGSDYTQGIKGIGPVLAVEILAEFGSLKRFKS--WFDEKTKTTKLDQVTLTPL 873
Query: 262 HRSIEKILENIDTKKYTVPEGWLYKEARELFRHPEI 297
R++ ++N K +P+ + K E ++HPE+
Sbjct: 874 QRNLTNRIKN---GKLYLPDNFPDKVIFEAYQHPEV 906
Score = 43.9 bits (102), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 29/49 (59%)
Query: 231 SFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTV 279
+ I+L ILLG DY I+GIGP A+E++ E S+++ D K T
Sbjct: 815 NLIELAILLGSDYTQGIKGIGPVLAVEILAEFGSLKRFKSWFDEKTKTT 863
>gi|448612021|ref|ZP_21662451.1| flap endonuclease-1 [Haloferax mucosum ATCC BAA-1512]
gi|445742782|gb|ELZ94276.1| flap endonuclease-1 [Haloferax mucosum ATCC BAA-1512]
Length = 326
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 43/135 (31%), Positives = 67/135 (49%), Gaps = 10/135 (7%)
Query: 60 KAPCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVL 119
+AP E EAQ + M G +ED D L FG+ LR +T +L L+ L
Sbjct: 150 EAPAEGEAQASYMAHKGDADYVGSEDYDTLLFGAPYTLRQLTSKGNPEL----MDLDATL 205
Query: 120 EGMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEG 179
++S E+ ID+ +L G D+ + I G+GPK A++ +K+H + +LE + ++P
Sbjct: 206 AKHDISWEQLIDIAMLCGTDFNEGITGVGPKTAVKEVKKHGDLWSVLE---ARGESIPNA 262
Query: 180 WLYKEARELFRHPEV 194
RE F P V
Sbjct: 263 ---DRVREFFVDPPV 274
Score = 55.8 bits (133), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 34/112 (30%), Positives = 59/112 (52%), Gaps = 3/112 (2%)
Query: 298 ADPETIELVADVAPSSIRESRKICIDASMSLYQFLIAV--RSEGNQLMSVDGEPTSHLMG 355
AD T+ +++V+ + S + +DA LY++L + + +GE ++L+G
Sbjct: 4 ADLRTLAALSEVSFDEVGGS-VVAVDAHNWLYRYLTTTVKWTSSETYTTSEGEEVANLVG 62
Query: 356 TFYRTIRLVEHGLKPIYVFDGKPPTLKSGELNKRMEKREDAQKALAKAQEQG 407
+ EH L P++VFDG +K E+ KR E+RE A++ L A+E G
Sbjct: 63 IVQGLPKFFEHDLTPVFVFDGGVTDMKDDEVAKRREQREKAEERLEAAREAG 114
Score = 43.1 bits (100), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 35/66 (53%), Gaps = 6/66 (9%)
Query: 232 FIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGWLYKEAREL 291
ID+ +L G D+ + I G+GPK A++ +K+H + +LE + ++P RE
Sbjct: 215 LIDIAMLCGTDFNEGITGVGPKTAVKEVKKHGDLWSVLE---ARGESIPNA---DRVREF 268
Query: 292 FRHPEI 297
F P +
Sbjct: 269 FVDPPV 274
>gi|402222283|gb|EJU02350.1| PIN domain-like protein [Dacryopinax sp. DJM-731 SS1]
Length = 636
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 45/129 (34%), Positives = 70/129 (54%), Gaps = 6/129 (4%)
Query: 62 PCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVLEG 121
P EAEA A++V G +ED D L + + LLR++T R+LP+ V
Sbjct: 437 PYEAEALAASLVINGLANYVGSEDTDVLIYEAP-LLRNLT---NRQLPLALISGTDVRNA 492
Query: 122 MELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGWL 181
++LS E F+D +LLG D+ ++ +GP AI+LI+ + SIE++L + KY +
Sbjct: 493 LQLSRESFVDFALLLGTDFTQRVKNLGPHTAIKLIRTYGSIEQLLRS--QTKYVPSSPGV 550
Query: 182 YKEARELFR 190
Y E E+ R
Sbjct: 551 YMEQIEVAR 559
Score = 48.5 bits (114), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 44/78 (56%), Gaps = 3/78 (3%)
Query: 217 IRGIGPKRAIELLY-SFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTK 275
I G + A++L SF+D +LLG D+ ++ +GP AI+LI+ + SIE++L +
Sbjct: 484 ISGTDVRNALQLSRESFVDFALLLGTDFTQRVKNLGPHTAIKLIRTYGSIEQLLRS--QT 541
Query: 276 KYTVPEGWLYKEARELFR 293
KY +Y E E+ R
Sbjct: 542 KYVPSSPGVYMEQIEVAR 559
>gi|344305257|gb|EGW35489.1| hypothetical protein SPAPADRAFT_69718 [Spathaspora passalidarum
NRRL Y-27907]
Length = 980
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 44/117 (37%), Positives = 71/117 (60%), Gaps = 5/117 (4%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVLE 120
AP EAEAQCA ++K G V T+D D L FG + + ++M F++ + + E +++ +E
Sbjct: 736 APMEAEAQCAELLKIGLVDGIITDDSDCLLFGGDHVYKNM-FNQKQYV---ECYIKDDIE 791
Query: 121 G-MELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTV 176
+ LS ++ I+L +LLG DY + I+GIGP A+E++ E S+E + D TV
Sbjct: 792 AKVGLSRDKLIELALLLGSDYTEGIKGIGPVLAMEILAEFESLEGFKDWFDDNTKTV 848
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 41/93 (44%), Positives = 55/93 (59%), Gaps = 15/93 (16%)
Query: 318 RKICIDASMSLYQFLIAVRS-EGNQLMSVDGEPTSHLMGTFYRTIRLVEHGLKPIYVFDG 376
+K+ +DAS+ +YQFL AVR EGN L P+SH++G F R +L+ G+ PI+VFDG
Sbjct: 25 KKLAVDASIWIYQFLKAVRDKEGNSL------PSSHIIGFFRRICKLLYFGILPIFVFDG 78
Query: 377 KPPTLKSGELNKRMEK--------REDAQKALA 401
P LK +N R + RE AQK LA
Sbjct: 79 GVPVLKRETINARKNRRLKKAETTRETAQKLLA 111
Score = 44.3 bits (103), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 29/48 (60%)
Query: 232 FIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTV 279
I+L +LLG DY + I+GIGP A+E++ E S+E + D TV
Sbjct: 801 LIELALLLGSDYTEGIKGIGPVLAMEILAEFESLEGFKDWFDDNTKTV 848
>gi|448592407|ref|ZP_21651514.1| flap endonuclease-1 [Haloferax elongans ATCC BAA-1513]
gi|445731412|gb|ELZ82996.1| flap endonuclease-1 [Haloferax elongans ATCC BAA-1513]
Length = 326
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 41/135 (30%), Positives = 69/135 (51%), Gaps = 10/135 (7%)
Query: 60 KAPCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVL 119
+AP E EAQ + M + G +ED D L FG+ LR +T +L L+ L
Sbjct: 150 EAPAEGEAQASYMARKGDADYVGSEDYDTLLFGAPYTLRQLTSKGNPEL----MDLDATL 205
Query: 120 EGMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEG 179
+ +++ E+ +D+ +L G D+ + I G+GPK A++ +K+H + +LE + ++P
Sbjct: 206 DKHDITWEQLVDIAMLCGTDFNEGISGVGPKTAVKEVKKHGDLWAVLE---ARGDSIPNA 262
Query: 180 WLYKEARELFRHPEV 194
RE F P V
Sbjct: 263 ---DRVREFFLDPPV 274
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 35/112 (31%), Positives = 60/112 (53%), Gaps = 3/112 (2%)
Query: 298 ADPETIELVADVAPSSIRESRKICIDASMSLYQFLIAVRSEGN--QLMSVDGEPTSHLMG 355
AD T+ +++V+ + S + +DA LY++L N + + +GE ++L+G
Sbjct: 4 ADLRTLAALSEVSFDEVAGS-VVAVDAHNWLYRYLTTTVKWTNSEKYTTSEGEEVANLVG 62
Query: 356 TFYRTIRLVEHGLKPIYVFDGKPPTLKSGELNKRMEKREDAQKALAKAQEQG 407
+ EH L P++VFDG +K E+ KR E+RE A+ L +A+E G
Sbjct: 63 IVQGLPKFFEHDLTPVFVFDGGVTEMKDDEVAKRREQREKAEARLEEAREAG 114
Score = 42.4 bits (98), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 35/66 (53%), Gaps = 6/66 (9%)
Query: 232 FIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGWLYKEAREL 291
+D+ +L G D+ + I G+GPK A++ +K+H + +LE + ++P RE
Sbjct: 215 LVDIAMLCGTDFNEGISGVGPKTAVKEVKKHGDLWAVLE---ARGDSIPNA---DRVREF 268
Query: 292 FRHPEI 297
F P +
Sbjct: 269 FLDPPV 274
>gi|392589053|gb|EIW78384.1| PIN domain-like protein [Coniophora puteana RWD-64-598 SS2]
Length = 712
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 38/107 (35%), Positives = 65/107 (60%), Gaps = 4/107 (3%)
Query: 60 KAPCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVL 119
+ P EAEA A+MV G+ A+ED D L + LLR++ ++ +P+ +V
Sbjct: 528 QGPYEAEAVAASMVAHGQADYVASEDTDVLVYEVP-LLRNIA---SKDVPLMLLEGLQVR 583
Query: 120 EGMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKIL 166
+ ++LS E+++D ILLG D+ I+ +GP RA+ I+++ +IEK+L
Sbjct: 584 DALQLSDEQYVDFAILLGTDFSQRIKNVGPARALRFIRKYGTIEKML 630
Score = 45.1 bits (105), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 27/38 (71%)
Query: 232 FIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKIL 269
++D ILLG D+ I+ +GP RA+ I+++ +IEK+L
Sbjct: 593 YVDFAILLGTDFSQRIKNVGPARALRFIRKYGTIEKML 630
>gi|367004070|ref|XP_003686768.1| hypothetical protein TPHA_0H01260 [Tetrapisispora phaffii CBS 4417]
gi|357525070|emb|CCE64334.1| hypothetical protein TPHA_0H01260 [Tetrapisispora phaffii CBS 4417]
Length = 1051
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 42/105 (40%), Positives = 58/105 (55%), Gaps = 3/105 (2%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVLE 120
AP EAEAQCA ++K V T+D D FG + + ++M F E K V+ + +K+
Sbjct: 808 APMEAEAQCAELLKLKLVDGIITDDSDVFLFGGSKVYKNM-FHE--KNYVEFYDQDKLTV 864
Query: 121 GMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKI 165
+ L IDL +LLG DY I+GIGP IE+I E S+E
Sbjct: 865 QLGLERSNLIDLALLLGSDYTSGIKGIGPVSGIEIIAEFGSLENF 909
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 32/80 (40%), Positives = 52/80 (65%), Gaps = 7/80 (8%)
Query: 316 ESRKICIDASMSLYQFLIAVR-SEGNQLMSVDGEPTSHLMGTFYRTIRLVEHGLKPIYVF 374
E + + +DAS+ +YQFL AVR +EGN + + +H++G F R +L+ G+KP++VF
Sbjct: 23 EDKVMAVDASIWIYQFLKAVRDNEGNSVNN------AHIVGFFRRICKLLYFGVKPVFVF 76
Query: 375 DGKPPTLKSGELNKRMEKRE 394
DG P LK + +R E+R+
Sbjct: 77 DGGVPVLKRETIRQRKERRQ 96
Score = 46.2 bits (108), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 19/38 (50%), Positives = 24/38 (63%)
Query: 231 SFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKI 268
+ IDL +LLG DY I+GIGP IE+I E S+E
Sbjct: 872 NLIDLALLLGSDYTSGIKGIGPVSGIEIIAEFGSLENF 909
>gi|403413406|emb|CCM00106.1| predicted protein [Fibroporia radiculosa]
Length = 2893
Score = 73.9 bits (180), Expect = 2e-10, Method: Composition-based stats.
Identities = 52/164 (31%), Positives = 80/164 (48%), Gaps = 29/164 (17%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVLE 120
AP EAEAQCA ++ G V T+D D FG +L++M F++++ V+ F L +
Sbjct: 2516 APMEAEAQCAELLSLGLVDGIITDDSDVFLFGGMRVLKNM-FNQSKT--VECFLLSDLER 2572
Query: 121 GMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKE-------HRS---IEKILENID 170
+ L ++ I L LLG DY D + G+GP A+EL+KE H+ +K+ D
Sbjct: 2573 ELGLERDKLIRLAYLLGSDYTDGLPGVGPVVAMELLKEFPGQDGLHKFKYWWQKVQSGKD 2632
Query: 171 TKKYT----------------VPEGWLYKEARELFRHPEVADPE 198
TK+ T +P+ W R+ + HP V + E
Sbjct: 2633 TKEDTNSGFRKRFKKRFKELYLPDEWPNPAVRDAYHHPTVDESE 2676
Score = 59.7 bits (143), Expect = 4e-06, Method: Composition-based stats.
Identities = 31/92 (33%), Positives = 54/92 (58%), Gaps = 7/92 (7%)
Query: 316 ESRKICIDASMSLYQFLIAVR-SEGNQLMSVDGEPTSHLMGTFYRTIRLVEHGLKPIYVF 374
E + + ID+S+ +YQF +R EG L++ +H++G R +L+ +G+KP++VF
Sbjct: 1653 EGKAMAIDSSIWIYQFQATMRDKEGRGLVN------AHVLGFLRRICKLLFYGIKPVFVF 1706
Query: 375 DGKPPTLKSGELNKRMEKREDAQKALAKAQEQ 406
DG P LK + +R +K+ A + AK E+
Sbjct: 1707 DGGAPVLKRATIAERKKKKSGAALSHAKVAER 1738
Score = 40.4 bits (93), Expect = 2.5, Method: Composition-based stats.
Identities = 28/96 (29%), Positives = 42/96 (43%), Gaps = 26/96 (27%)
Query: 232 FIDLCILLGCDYCDSIRGIGPKRAIELIKE-------HRS---IEKILENIDTKKYT--- 278
I L LLG DY D + G+GP A+EL+KE H+ +K+ DTK+ T
Sbjct: 2581 LIRLAYLLGSDYTDGLPGVGPVVAMELLKEFPGQDGLHKFKYWWQKVQSGKDTKEDTNSG 2640
Query: 279 -------------VPEGWLYKEARELFRHPEIADPE 301
+P+ W R+ + HP + + E
Sbjct: 2641 FRKRFKKRFKELYLPDEWPNPAVRDAYHHPTVDESE 2676
>gi|390599160|gb|EIN08557.1| PIN domain-like protein [Punctularia strigosozonata HHB-11173 SS5]
Length = 317
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 49/152 (32%), Positives = 76/152 (50%), Gaps = 7/152 (4%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKV-- 118
AP EA+AQ A + + G V A TED D L FG +L + A V +
Sbjct: 147 APYEADAQLAYLERTGAVSAILTEDSDLLVFGCRHVLFKLDHVSATVSAVSRSDFGSLSS 206
Query: 119 --LEGMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTK-KYT 175
+ + S +F + IL GCDY SI G+G K A L+++H+++E + + + K
Sbjct: 207 SDITLLGWSDVQFRAMAILSGCDYLPSIPGVGLKTAWALLRKHKNVENAVRALRLEGKKP 266
Query: 176 VPEGWL--YKEARELFRHPEVADPETIEFIDL 205
VP+G+L ++ A ++F H V DP + L
Sbjct: 267 VPDGYLDAFRLAEKVFLHQRVYDPAQARLVHL 298
Score = 56.2 bits (134), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 32/92 (34%), Positives = 53/92 (57%), Gaps = 5/92 (5%)
Query: 232 FIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTK-KYTVPEGWL--YKEA 288
F + IL GCDY SI G+G K A L+++H+++E + + + K VP+G+L ++ A
Sbjct: 219 FRAMAILSGCDYLPSIPGVGLKTAWALLRKHKNVENAVRALRLEGKKPVPDGYLDAFRLA 278
Query: 289 RELFRHPEIADPETIELV--ADVAPSSIRESR 318
++F H + DP LV DV+P ++R
Sbjct: 279 EKVFLHQRVYDPAQARLVHLNDVSPGEPWDAR 310
>gi|156096711|ref|XP_001614389.1| endonuclease [Plasmodium vivax Sal-1]
gi|148803263|gb|EDL44662.1| endonuclease, putative [Plasmodium vivax]
Length = 407
Score = 73.6 bits (179), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 41/111 (36%), Positives = 66/111 (59%), Gaps = 5/111 (4%)
Query: 64 EAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVLEGME 123
+AE +CA K ++D DAL FG+ L+R + + R + + +++L +
Sbjct: 264 DAEKECAIQCSHEKD-IVVSDDTDALAFGAPNLIRFIMNKKKRHI----INKDELLNELN 318
Query: 124 LSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKY 174
+++E+FID CIL GCDY I GIGP +A E+IK++++IE LE+ KY
Sbjct: 319 INYEQFIDFCILSGCDYSAKIPGIGPVKAHEIIKKYKTIETFLESSAFNKY 369
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/46 (54%), Positives = 32/46 (69%)
Query: 232 FIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKY 277
FID CIL GCDY I GIGP +A E+IK++++IE LE+ KY
Sbjct: 324 FIDFCILSGCDYSAKIPGIGPVKAHEIIKKYKTIETFLESSAFNKY 369
Score = 43.1 bits (100), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 30/52 (57%), Gaps = 3/52 (5%)
Query: 181 LYKEARELFRHPEVADPETI---EFIDLCILLGCDYCDSIRGIGPKRAIELL 229
+ K+ R + E+ + I +FID CIL GCDY I GIGP +A E++
Sbjct: 300 MNKKKRHIINKDELLNELNINYEQFIDFCILSGCDYSAKIPGIGPVKAHEII 351
>gi|348686536|gb|EGZ26351.1| hypothetical protein PHYSODRAFT_540882 [Phytophthora sojae]
Length = 398
Score = 73.6 bits (179), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 50/150 (33%), Positives = 74/150 (49%), Gaps = 4/150 (2%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSE-ARKLPVQEFHLEKVL 119
AP EA+AQ A +VK G TED D L FG +L M A+++ K L
Sbjct: 148 APYEADAQLAYLVKNGLADGVITEDSDCLPFGCQTVLFKMDRDNVAQEIQAVNLKKNKGL 207
Query: 120 EGMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTK-KYTVPE 178
+ + F+++CI GCDY SI G G K+A +K+H S KI+ + + K +P
Sbjct: 208 SFHMFTEQMFLEMCIFSGCDYLPSISGFGLKKAYTAMKQHGSFTKIIRALRLEGKVRIPA 267
Query: 179 GWL--YKEARELFRHPEVADPETIEFIDLC 206
+ +++A FRH V P+ E + L
Sbjct: 268 SYEDDFRKAVLTFRHQRVYCPKKKELVPLT 297
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/100 (32%), Positives = 52/100 (52%), Gaps = 7/100 (7%)
Query: 232 FIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTK-KYTVPEGWL--YKEA 288
F+++CI GCDY SI G G K+A +K+H S KI+ + + K +P + +++A
Sbjct: 217 FLEMCIFSGCDYLPSISGFGLKKAYTAMKQHGSFTKIIRALRLEGKVRIPASYEDDFRKA 276
Query: 289 RELFRHPEIADPETIELVADVAPSSIRESRKICIDASMSL 328
FRH + P+ ELV P + + + ID +M
Sbjct: 277 VLTFRHQRVYCPKKKELV----PLTPIPANLLEIDPTMDF 312
>gi|221055149|ref|XP_002258713.1| endonuclease [Plasmodium knowlesi strain H]
gi|193808783|emb|CAQ39485.1| endonuclease, putative [Plasmodium knowlesi strain H]
Length = 415
Score = 73.2 bits (178), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 41/111 (36%), Positives = 65/111 (58%), Gaps = 5/111 (4%)
Query: 64 EAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVLEGME 123
+AE +CA K ++D DAL FG+ L+R + + R + + +++L +
Sbjct: 272 DAEKECAIQCSHEKD-IVVSDDTDALAFGAPNLIRFIMNKKKRHI----INKDELLNELN 326
Query: 124 LSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKY 174
+S+E+FID CIL GCDY I GIGP +A +IK++++IE LE+ KY
Sbjct: 327 ISYEQFIDFCILSGCDYSAKIPGIGPVKAHNIIKKYKTIETFLESSAFNKY 377
Score = 52.8 bits (125), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 24/46 (52%), Positives = 31/46 (67%)
Query: 232 FIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKY 277
FID CIL GCDY I GIGP +A +IK++++IE LE+ KY
Sbjct: 332 FIDFCILSGCDYSAKIPGIGPVKAHNIIKKYKTIETFLESSAFNKY 377
Score = 41.6 bits (96), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 29/52 (55%), Gaps = 3/52 (5%)
Query: 181 LYKEARELFRHPEVADPETI---EFIDLCILLGCDYCDSIRGIGPKRAIELL 229
+ K+ R + E+ + I +FID CIL GCDY I GIGP +A ++
Sbjct: 308 MNKKKRHIINKDELLNELNISYEQFIDFCILSGCDYSAKIPGIGPVKAHNII 359
>gi|449525676|ref|XP_004169842.1| PREDICTED: LOW QUALITY PROTEIN: exonuclease 1-like [Cucumis
sativus]
Length = 685
Score = 73.2 bits (178), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 59/206 (28%), Positives = 95/206 (46%), Gaps = 10/206 (4%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFG-SNILLRHMTFSEARKLPVQEFHLEKVL 119
AP EA+AQ + + +V A TED D + FG I+ + F + + K L
Sbjct: 147 APYEADAQMTFLAISNQVDAVLTEDSDLIPFGCPRIIFKMDKFGQGVEFRYDMLQKNKDL 206
Query: 120 EGMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEG 179
+ + +++CIL GCDY S+ G+G KRA LI + S EK++ ++ VP
Sbjct: 207 NFSGFTKQMILEMCILSGCDYLPSLPGMGLKRAHALIXKFLSYEKVIRHLRYSTVAVPHL 266
Query: 180 W--LYKEARELFRHPEVADPETIEFIDLCILLGCDYC-DSIRGIGPKRAIELLYSF---- 232
+ +K+A F+H V DP T + + L + D+ D + +GP +
Sbjct: 267 YEESFKKAILTFQHQRVYDPITEDIVHLSQI--SDHIEDDLDFLGPSIPQHIAKGIAEGD 324
Query: 233 IDLCILLGCDYCDSIRGIGPKRAIEL 258
ID C L D+ G+ +R +L
Sbjct: 325 IDPCTNLPFQEQDTNTGVVHERPYKL 350
Score = 52.0 bits (123), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 45/77 (58%), Gaps = 2/77 (2%)
Query: 232 FIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGW--LYKEAR 289
+++CIL GCDY S+ G+G KRA LI + S EK++ ++ VP + +K+A
Sbjct: 216 ILEMCILSGCDYLPSLPGMGLKRAHALIXKFLSYEKVIRHLRYSTVAVPHLYEESFKKAI 275
Query: 290 ELFRHPEIADPETIELV 306
F+H + DP T ++V
Sbjct: 276 LTFQHQRVYDPITEDIV 292
>gi|403361276|gb|EJY80337.1| 5'-3' exonuclease (including N-terminal domain of PolI) [Oxytricha
trifallax]
Length = 714
Score = 73.2 bits (178), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 47/149 (31%), Positives = 78/149 (52%), Gaps = 10/149 (6%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHM------TFSEARKLPV-QEF 113
AP EA+AQ A + K GKV TED D L +G +L M + + L F
Sbjct: 150 APYEADAQLAHLFKTGKVDLIITEDSDLLVYGVTRVLFKMDPQGQGIYIDLNNLNQCDAF 209
Query: 114 HLEKVLEGMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRS-IEKILENIDTK 172
+ + G ++ + CIL GCDYC+S++G+G K A++L+KE+ I +I+E++ K
Sbjct: 210 KMPQSNGGKVFDYDLLLKTCILNGCDYCESLKGVGFKTALKLMKEYNGDIRQIVESLRGK 269
Query: 173 KYTVPEGWL--YKEARELFRHPEVADPET 199
+ + ++ ++ A F++ V D E
Sbjct: 270 NIPIRQNYMQDFQRAELTFKYQVVFDMEN 298
Score = 52.8 bits (125), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 40/127 (31%), Positives = 68/127 (53%), Gaps = 12/127 (9%)
Query: 181 LYKEARELFRHPEVADPETIE-FIDLCILLGCDYCDSIRGIGPKR-AIELLYSFIDLCIL 238
+Y R LF+ DP+ +IDL L CD + G K +LL + CIL
Sbjct: 179 VYGVTRVLFK----MDPQGQGIYIDLNNLNQCDAFKMPQSNGGKVFDYDLL---LKTCIL 231
Query: 239 LGCDYCDSIRGIGPKRAIELIKEHRS-IEKILENIDTKKYTVPEGWL--YKEARELFRHP 295
GCDYC+S++G+G K A++L+KE+ I +I+E++ K + + ++ ++ A F++
Sbjct: 232 NGCDYCESLKGVGFKTALKLMKEYNGDIRQIVESLRGKNIPIRQNYMQDFQRAELTFKYQ 291
Query: 296 EIADPET 302
+ D E
Sbjct: 292 VVFDMEN 298
>gi|254581574|ref|XP_002496772.1| ZYRO0D07788p [Zygosaccharomyces rouxii]
gi|238939664|emb|CAR27839.1| ZYRO0D07788p [Zygosaccharomyces rouxii]
Length = 1030
Score = 72.8 bits (177), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 39/105 (37%), Positives = 59/105 (56%), Gaps = 3/105 (2%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVLE 120
AP EAEAQCA +++ V T+D D FG N + ++M FSE V+ + E + +
Sbjct: 788 APMEAEAQCATLMRDRLVDGVITDDSDVFLFGGNKVYKNM-FSERNY--VEYYDAESIYK 844
Query: 121 GMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKI 165
+ L I+L LLG DY + I+G+GP +E+I E S+E+
Sbjct: 845 NLGLDRNGMIELAQLLGSDYTNGIKGMGPVSGMEVIAEFGSLEEF 889
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 36/87 (41%), Positives = 54/87 (62%), Gaps = 7/87 (8%)
Query: 316 ESRKICIDASMSLYQFLIAVRS-EGNQLMSVDGEPTSHLMGTFYRTIRLVEHGLKPIYVF 374
+ RK+ +DAS+ +YQFL AVR EGN L SH++G F R +L+ G+KP++VF
Sbjct: 23 QDRKMAVDASIWIYQFLKAVRDQEGNALKH------SHIVGFFRRICKLLYFGIKPVFVF 76
Query: 375 DGKPPTLKSGELNKRMEKREDAQKALA 401
DG P LK + +R E+R+ ++ A
Sbjct: 77 DGGVPALKQDTIRQRKERRQGKRENAA 103
>gi|320167587|gb|EFW44486.1| exodeoxyribonuclease 1 [Capsaspora owczarzaki ATCC 30864]
Length = 522
Score = 72.8 bits (177), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 49/167 (29%), Positives = 84/167 (50%), Gaps = 7/167 (4%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFG-SNILLRHMTFSEARKLPVQEFH--LEK 117
AP EA+AQ + + + A +ED D L FG +L + F E + ++F LE
Sbjct: 96 APYEADAQLGYLARENYIAAVISEDSDLLLFGCQRVLYKMDKFGEGVLIDQKDFANCLEL 155
Query: 118 VLEGMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVP 177
L+ L ++ +CIL GCDY DSI GIG K A +L+ +++++ ++ ++ K VP
Sbjct: 156 DLQNWTL--DQLRRMCILSGCDYLDSISGIGLKTANKLLIRYKTVQNVVTHMRKKMMDVP 213
Query: 178 EGW--LYKEARELFRHPEVADPETIEFIDLCILLGCDYCDSIRGIGP 222
+ L+ +A F++ V P ++E + + + IGP
Sbjct: 214 RDYEDLFLQAENTFKYQRVVHPGSLELTHVTPVPDAVDISQMDYIGP 260
Score = 55.1 bits (131), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 45/74 (60%), Gaps = 2/74 (2%)
Query: 235 LCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGW--LYKEARELF 292
+CIL GCDY DSI GIG K A +L+ +++++ ++ ++ K VP + L+ +A F
Sbjct: 168 MCILSGCDYLDSISGIGLKTANKLLIRYKTVQNVVTHMRKKMMDVPRDYEDLFLQAENTF 227
Query: 293 RHPEIADPETIELV 306
++ + P ++EL
Sbjct: 228 KYQRVVHPGSLELT 241
>gi|443897892|dbj|GAC75231.1| 5'-3' exonuclease [Pseudozyma antarctica T-34]
Length = 730
Score = 72.8 bits (177), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 52/165 (31%), Positives = 81/165 (49%), Gaps = 4/165 (2%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFG-SNILLRHMTFSEARKLPVQEFHLEKVL 119
AP EA+AQ A + G + TED D L FG +L + A ++ Q F + L
Sbjct: 147 APYEADAQLAFLEAEGIIDGIITEDSDLLVFGCKTVLFKLDQAGNAIEMLQQRFWTNRQL 206
Query: 120 EGMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTK-KYTVPE 178
+ EF + IL GCDY SI G+G K A L++ +++++K+L+ + + K VP
Sbjct: 207 ALSGWTAVEFRQMAILSGCDYLPSIVGMGLKNAHRLLRRYKTVDKVLQAVRLEGKLRVPN 266
Query: 179 GWL--YKEARELFRHPEVADPETIEFIDLCILLGCDYCDSIRGIG 221
+ +++A F H V DP T + L L + D + IG
Sbjct: 267 DYAREFRKAELTFVHQRVFDPRTQRLVTLTPLPDGTHDDMLPFIG 311
Score = 49.7 bits (117), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 45/78 (57%), Gaps = 3/78 (3%)
Query: 232 FIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTK-KYTVPEGWL--YKEA 288
F + IL GCDY SI G+G K A L++ +++++K+L+ + + K VP + +++A
Sbjct: 216 FRQMAILSGCDYLPSIVGMGLKNAHRLLRRYKTVDKVLQAVRLEGKLRVPNDYAREFRKA 275
Query: 289 RELFRHPEIADPETIELV 306
F H + DP T LV
Sbjct: 276 ELTFVHQRVFDPRTQRLV 293
>gi|448121834|ref|XP_004204307.1| Piso0_000145 [Millerozyma farinosa CBS 7064]
gi|358349846|emb|CCE73125.1| Piso0_000145 [Millerozyma farinosa CBS 7064]
Length = 1063
Score = 72.8 bits (177), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 42/111 (37%), Positives = 67/111 (60%), Gaps = 5/111 (4%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVLE 120
AP EAEAQCA +++ G V T+D D FG + + ++M F++ + + E + +K +E
Sbjct: 818 APMEAEAQCAELMRIGLVDGIITDDSDCFLFGGDKVYKNM-FNQKKYV---ECYSQKDIE 873
Query: 121 G-MELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENID 170
+ LS + I+L +LLG DY ++GIGP A+E++ E S+EK E D
Sbjct: 874 SHLGLSQDNLIELALLLGSDYTRGVKGIGPVLAVEILAEFGSLEKFKEWFD 924
Score = 69.7 bits (169), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 35/85 (41%), Positives = 53/85 (62%), Gaps = 7/85 (8%)
Query: 318 RKICIDASMSLYQFLIAVR-SEGNQLMSVDGEPTSHLMGTFYRTIRLVEHGLKPIYVFDG 376
+K+ +DAS+ +YQFL AVR EGN L P SH++G F R +L+ +G+ P++VFDG
Sbjct: 25 KKLAVDASIWIYQFLKAVRDGEGNAL------PQSHIVGFFRRICKLLYYGIMPVFVFDG 78
Query: 377 KPPTLKSGELNKRMEKREDAQKALA 401
P LK + R +RED +++
Sbjct: 79 GAPVLKKQTIADRRARREDKTESVT 103
Score = 44.3 bits (103), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 19/43 (44%), Positives = 28/43 (65%)
Query: 231 SFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENID 273
+ I+L +LLG DY ++GIGP A+E++ E S+EK E D
Sbjct: 882 NLIELALLLGSDYTRGVKGIGPVLAVEILAEFGSLEKFKEWFD 924
>gi|315041705|ref|XP_003170229.1| DNA-repair protein rad13 [Arthroderma gypseum CBS 118893]
gi|311345263|gb|EFR04466.1| DNA-repair protein rad13 [Arthroderma gypseum CBS 118893]
Length = 1126
Score = 72.8 bits (177), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 62/204 (30%), Positives = 92/204 (45%), Gaps = 41/204 (20%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVLE 120
AP EAEAQCA +V G V T+D D FG + ++M F++++ + E +L LE
Sbjct: 810 APMEAEAQCAELVALGLVDGIVTDDSDTFLFGGTRIYKNM-FNQSKYV---ECYLSSDLE 865
Query: 121 G-MELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIE-------------KIL 166
L ++ I LLG DY + I GIGP A+E++ E +E KI
Sbjct: 866 KEYTLDRKKLISFSHLLGSDYTEGIPGIGPVTALEILTEFSDLEEFRDWWSEIQLGNKIP 925
Query: 167 ENI----------DTKKYTVPEGWLYKEARELFRHPEVADPETIEFIDLCILLGCDYCDS 216
++I + K +P G+ K + + PEV DP+ EF G D+
Sbjct: 926 DDIHAGFRKKFKKNVTKLFLPPGFPDKAVEKAYLEPEV-DPDPSEF-----KWGVPDLDA 979
Query: 217 IR-------GIGPKRAIELLYSFI 233
+R G P+R E+L I
Sbjct: 980 VRQFLMTTIGWSPERTDEVLVPVI 1003
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 31/66 (46%), Positives = 44/66 (66%), Gaps = 7/66 (10%)
Query: 318 RKICIDASMSLYQFLIAVRS-EGNQLMSVDGEPTSHLMGTFYRTIRLVEHGLKPIYVFDG 376
R++ IDAS+ +YQFL AVR EGN L + +H++G F R +L+ G+KP++VFDG
Sbjct: 25 RRLAIDASIWIYQFLKAVRDKEGNALRN------AHIVGFFRRICKLLFFGIKPVFVFDG 78
Query: 377 KPPTLK 382
P LK
Sbjct: 79 GAPILK 84
>gi|84996925|ref|XP_953184.1| endonuclease (xp-g/RAD2 homologue) [Theileria annulata strain
Ankara]
gi|65304180|emb|CAI76559.1| endonuclease (xp-g/RAD2 homologue), putative [Theileria annulata]
Length = 899
Score = 72.8 bits (177), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 35/105 (33%), Positives = 64/105 (60%), Gaps = 4/105 (3%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVLE 120
AP EAE+QCA M ++GK YA ++D D+L FG+ LL++ + +L + L+++
Sbjct: 606 APSEAESQCAYMNRSGKCYAVISDDSDSLVFGAKCLLKNFYNDKVFEL----YKLDRIRR 661
Query: 121 GMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKI 165
+ + ++ + I+ GCDY + ++GIG A+E+IK + + E +
Sbjct: 662 ELGIGRKQLALIAIICGCDYTNGVKGIGIVNALEVIKAYPTFEDL 706
>gi|115298568|ref|YP_762421.1| 40.8 kDa FEN-1/FLAP-like endonuclease XPG N-I domain [Spodoptera
frugiperda ascovirus 1a]
gi|114416835|emb|CAL44666.1| 40.8 kDa FEN-1/FLAP-like endonuclease XPG N-I domain [Spodoptera
frugiperda ascovirus 1a]
Length = 356
Score = 72.8 bits (177), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 49/135 (36%), Positives = 71/135 (52%), Gaps = 16/135 (11%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTF-GSNILLRHMTFSEARKLPVQEF---HLE 116
+P EAE CAAM+ V + D D L + G ++++ FS + LP F +
Sbjct: 192 SPNEAETMCAAMIHTRMVDVVYSRDYDMLAYDGVDMVV----FSIS--LPKGTFTCVDVT 245
Query: 117 KVLEGMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTV 176
K+L M ++ +FID CIL DY SI GI PKRA LIKE +++ +L+ +KY
Sbjct: 246 KLLNNMGMTRRQFIDFCILCSTDYNRSIPGIHPKRAFNLIKECTTLDVVLQTHKLEKYLD 305
Query: 177 PE--GWLYKEARELF 189
P+ W+ R LF
Sbjct: 306 PDKTAWV----RHLF 316
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/104 (34%), Positives = 53/104 (50%), Gaps = 18/104 (17%)
Query: 232 FIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPE--GWLYKEAR 289
FID CIL DY SI GI PKRA LIKE +++ +L+ +KY P+ W+ R
Sbjct: 258 FIDFCILCSTDYNRSIPGIHPKRAFNLIKECTTLDVVLQTHKLEKYLDPDKTAWV----R 313
Query: 290 ELFRHPEIADPETIELVAD-------VAPSSIRESRKICIDASM 326
LF + + ELV++ + S R S ++ +D +M
Sbjct: 314 HLF-----GNADAYELVSERNRGLYCSSNSGSRYSGRVKLDRNM 352
>gi|449019441|dbj|BAM82843.1| probable excision repair protein ERCC5 [Cyanidioschyzon merolae
strain 10D]
Length = 1117
Score = 72.8 bits (177), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 39/98 (39%), Positives = 62/98 (63%), Gaps = 3/98 (3%)
Query: 60 KAPCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVL 119
+A EAEAQCA + +AG V A TED DA FG++ + RH+ F +++ V+E+ + ++
Sbjct: 784 EAAMEAEAQCAFLDRAGIVDAVVTEDSDAFLFGASRVYRHI-FEDSKY--VEEYEMNRIE 840
Query: 120 EGMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIK 157
M LS ++ I L +LLG DY D + G+G A E+++
Sbjct: 841 RNMGLSRDKLICLGLLLGSDYSDGVYGVGIVNATEIVE 878
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 43/65 (66%), Gaps = 4/65 (6%)
Query: 318 RKICIDASMSLYQFLIAVRSEGNQLMSVDGEPTSHLMGTFYRTIRLVEHGLKPIYVFDGK 377
R++ +DAS+ L QF+ AVR + + +V +HL+G F R +L+ +G++ ++VFDG
Sbjct: 25 RRVAVDASIWLNQFVRAVR-DTEAMTTVR---NAHLLGIFRRCCKLLYYGIEAVFVFDGG 80
Query: 378 PPTLK 382
P+LK
Sbjct: 81 VPSLK 85
>gi|260948192|ref|XP_002618393.1| hypothetical protein CLUG_01852 [Clavispora lusitaniae ATCC 42720]
gi|238848265|gb|EEQ37729.1| hypothetical protein CLUG_01852 [Clavispora lusitaniae ATCC 42720]
Length = 1019
Score = 72.8 bits (177), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 52/185 (28%), Positives = 85/185 (45%), Gaps = 34/185 (18%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVLE 120
AP EAEAQCA + + G V T+D D FG + + ++M F++ K V+ + E +
Sbjct: 779 APMEAEAQCAELFRMGLVDGIVTDDSDCFLFGGSRIYKNM-FNQ--KQYVECYIAEDIKN 835
Query: 121 GMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSI------------------ 162
+ L ++ I+L +LLG DY + I+GIGP A+E++ E ++
Sbjct: 836 KIGLDQDKLIELAMLLGSDYTEGIKGIGPVMAMEILAEFGTLSNFKLWFDRHAKSAERPQ 895
Query: 163 -------EKILENIDTKKYTVPEGWLYKEARELFRHPEVADPETIEFIDLCILLGCDYCD 215
+K+L I K +P+G+ R+ ++ PEV + D G D
Sbjct: 896 QEYTPLEKKLLTRIKNGKLFLPDGFPSSVVRDAYKRPEV------DRDDSAFKWGTPSLD 949
Query: 216 SIRGI 220
IR
Sbjct: 950 QIRSF 954
Score = 63.2 bits (152), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 37/89 (41%), Positives = 55/89 (61%), Gaps = 8/89 (8%)
Query: 318 RKICIDASMSLYQFLIAVRS-EGNQLMSVDGEPTSHLMGTFYRTIRLVEHGLKPIYVFDG 376
+K+ +DAS+ +YQFL AVR +GN+L SH++G F R +L+ G+ P++VFDG
Sbjct: 25 KKLAVDASIWIYQFLKAVRDKDGNKLGQ------SHIVGFFRRICKLLYFGILPLFVFDG 78
Query: 377 KPPTLKSGELNKRMEKRE-DAQKALAKAQ 404
P LK + KR E+R +A+ A AQ
Sbjct: 79 GAPPLKRQVILKRRERRSGNAENAQTTAQ 107
Score = 47.8 bits (112), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 49/98 (50%), Gaps = 9/98 (9%)
Query: 202 FIDLCILLGCDYCDSIRGIGPKRAIELLYSFIDLCIL-LGCDYCDSIRGIGPKRAIELIK 260
I+L +LLG DY + I+GIGP A+E+L F L L D K A +
Sbjct: 844 LIELAMLLGSDYTEGIKGIGPVMAMEILAEFGTLSNFKLWFDRH-------AKSAERPQQ 896
Query: 261 EHRSIE-KILENIDTKKYTVPEGWLYKEARELFRHPEI 297
E+ +E K+L I K +P+G+ R+ ++ PE+
Sbjct: 897 EYTPLEKKLLTRIKNGKLFLPDGFPSSVVRDAYKRPEV 934
>gi|452847295|gb|EME49227.1| hypothetical protein DOTSEDRAFT_68105 [Dothistroma septosporum NZE10]
Length = 1395
Score = 72.4 bits (176), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 45/108 (41%), Positives = 63/108 (58%), Gaps = 5/108 (4%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVLE 120
AP EAEAQCA +V G V T+D D FG + ++M F++A+ + E +L LE
Sbjct: 1041 APMEAEAQCAELVHLGLVDGIVTDDSDCFLFGGTRIYKNM-FNQAKFV---ECYLTSDLE 1096
Query: 121 G-MELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILE 167
+L+ ++ I + LLG DY D I GIGP A+E+I E S+EK E
Sbjct: 1097 KEFDLTRDKLIAVAHLLGSDYTDGIPGIGPVTALEIISEFGSLEKFKE 1144
Score = 66.2 bits (160), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 38/93 (40%), Positives = 56/93 (60%), Gaps = 9/93 (9%)
Query: 318 RKICIDASMSLYQFLIAVRS-EGNQLMSVDGEPTSHLMGTFYRTIRLVEHGLKPIYVFDG 376
R++ +DAS+ +YQFL AVR EGN L + SH++G F R +L+ G+KP++VFDG
Sbjct: 25 RRLAVDASIWIYQFLKAVRDKEGNALRN------SHVVGFFRRICKLLFFGIKPVFVFDG 78
Query: 377 KPPTLKSGELNKRMEKREDAQKALAKAQEQGKL 409
P LK + R +RE ++ A+ GKL
Sbjct: 79 GAPALKRQTIRARKARREGRREDAART--AGKL 109
Score = 43.1 bits (100), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 20/39 (51%), Positives = 24/39 (61%)
Query: 232 FIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILE 270
I + LLG DY D I GIGP A+E+I E S+EK E
Sbjct: 1106 LIAVAHLLGSDYTDGIPGIGPVTALEIISEFGSLEKFKE 1144
>gi|357131085|ref|XP_003567173.1| PREDICTED: exonuclease 1-like [Brachypodium distachyon]
Length = 893
Score = 72.4 bits (176), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 46/149 (30%), Positives = 78/149 (52%), Gaps = 3/149 (2%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFG-SNILLRHMTFSEARKLPVQEFHLEKVL 119
AP EA+AQ + V A TED D + FG S I+ + F + + + + L
Sbjct: 147 APYEADAQMTFLSVNKLVDAVITEDSDLIPFGCSRIIFKMDKFGQGVEFQIMRLEQNREL 206
Query: 120 EGMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEG 179
+ + + +++CIL GCDY S+ G+G KRA LI++ +S EK+++++ +VP
Sbjct: 207 DFNGFTKQMLLEMCILSGCDYLPSLPGMGVKRAHALIQKLKSHEKVIKHLRYSSVSVPPQ 266
Query: 180 W--LYKEARELFRHPEVADPETIEFIDLC 206
+ +K+A F+ V DP T + + L
Sbjct: 267 YEENFKKAIRAFQFQRVYDPATEDIVHLS 295
Score = 52.4 bits (124), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 48/77 (62%), Gaps = 2/77 (2%)
Query: 232 FIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGW--LYKEAR 289
+++CIL GCDY S+ G+G KRA LI++ +S EK+++++ +VP + +K+A
Sbjct: 216 LLEMCILSGCDYLPSLPGMGVKRAHALIQKLKSHEKVIKHLRYSSVSVPPQYEENFKKAI 275
Query: 290 ELFRHPEIADPETIELV 306
F+ + DP T ++V
Sbjct: 276 RAFQFQRVYDPATEDIV 292
>gi|156355443|ref|XP_001623677.1| predicted protein [Nematostella vectensis]
gi|156210399|gb|EDO31577.1| predicted protein [Nematostella vectensis]
Length = 306
Score = 72.4 bits (176), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 53/156 (33%), Positives = 81/156 (51%), Gaps = 12/156 (7%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKV-- 118
AP EA+AQ A ++K + A +ED D L +G ++ M S L V HL ++
Sbjct: 147 APYEADAQLAYLMKKNIIQAVISEDSDLLVYGCKKVMFKMDASGYGTL-VSLDHLSELTN 205
Query: 119 LEGMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKK----- 173
L+ E + E+F +CIL GCDY SI+GIG +A +L++ +I K N+ +
Sbjct: 206 LKMHEFTLEKFRHMCILSGCDYLPSIKGIGLIKANKLLRNSSNINKACINLTLVRNLRMD 265
Query: 174 --YTVPEGW--LYKEARELFRHPEVADPETIEFIDL 205
Y VP + +K+A E F + V DP + E + L
Sbjct: 266 DQYRVPVDYEKSFKQADETFLYQRVFDPVSCELVPL 301
Score = 48.5 bits (114), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 46/87 (52%), Gaps = 9/87 (10%)
Query: 229 LYSFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKK-------YTVPE 281
L F +CIL GCDY SI+GIG +A +L++ +I K N+ + Y VP
Sbjct: 213 LEKFRHMCILSGCDYLPSIKGIGLIKANKLLRNSSNINKACINLTLVRNLRMDDQYRVPV 272
Query: 282 GW--LYKEARELFRHPEIADPETIELV 306
+ +K+A E F + + DP + ELV
Sbjct: 273 DYEKSFKQADETFLYQRVFDPVSCELV 299
>gi|403223884|dbj|BAM42014.1| uncharacterized protein TOT_040000390 [Theileria orientalis strain
Shintoku]
Length = 784
Score = 72.4 bits (176), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 37/107 (34%), Positives = 61/107 (57%), Gaps = 4/107 (3%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVLE 120
AP EAE+QCA M K G YA ++D DAL FG+ LL++ +L + E++ +
Sbjct: 495 APSEAESQCAYMNKKGDCYAVISDDSDALVFGARCLLKNFYNDNVFEL----YTAERIRK 550
Query: 121 GMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILE 167
+ + ++ + ++ GCDY + +RGIG A+E+IK + E + E
Sbjct: 551 ELGIGRKQLALIAVICGCDYTNGVRGIGVVNALEVIKAYPKFEDLHE 597
>gi|224116484|ref|XP_002317312.1| predicted protein [Populus trichocarpa]
gi|222860377|gb|EEE97924.1| predicted protein [Populus trichocarpa]
Length = 398
Score = 72.4 bits (176), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 44/148 (29%), Positives = 76/148 (51%), Gaps = 3/148 (2%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFG-SNILLRHMTFSEARKLPVQEFHLEKVL 119
AP EA+AQ + +V A TED D + FG I+ + + + + K +
Sbjct: 147 APYEADAQMTFLSVCKQVDAVITEDSDLIPFGCHRIIFKMDKYGQGVEFQNSRLQQNKDI 206
Query: 120 EGMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEG 179
+ ++E +++CI GCDY S+ G+G KRA LI + +S +K+++++ +VP
Sbjct: 207 SFVGFTNEMLLEMCIFSGCDYQQSLPGMGLKRAHALITKFKSYDKVIKHLRYSTVSVPPL 266
Query: 180 W--LYKEARELFRHPEVADPETIEFIDL 205
+ +K+A FRH V DP + + L
Sbjct: 267 YEESFKKAILTFRHQRVYDPTMKDIVHL 294
Score = 52.4 bits (124), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 46/77 (59%), Gaps = 2/77 (2%)
Query: 232 FIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGW--LYKEAR 289
+++CI GCDY S+ G+G KRA LI + +S +K+++++ +VP + +K+A
Sbjct: 216 LLEMCIFSGCDYQQSLPGMGLKRAHALITKFKSYDKVIKHLRYSTVSVPPLYEESFKKAI 275
Query: 290 ELFRHPEIADPETIELV 306
FRH + DP ++V
Sbjct: 276 LTFRHQRVYDPTMKDIV 292
>gi|222445719|ref|ZP_03608234.1| hypothetical protein METSMIALI_01361 [Methanobrevibacter smithii
DSM 2375]
gi|222435284|gb|EEE42449.1| XPG I-region [Methanobrevibacter smithii DSM 2375]
Length = 187
Score = 72.4 bits (176), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 38/135 (28%), Positives = 80/135 (59%), Gaps = 7/135 (5%)
Query: 60 KAPCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVL 119
+A E EAQ A +V+ G +A A++D D L FG+ ++R++ + + ++ ++L++VL
Sbjct: 8 EAYGEGEAQAAYLVENGDAWAVASQDYDCLLFGAKRVVRNLAIN-SNLGNLEYYNLKRVL 66
Query: 120 EGMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEG 179
+ ++++ E+ ID+ IL+G D+ + ++G+G K A++L K+ K+ + + + +
Sbjct: 67 DELDINREQLIDMGILIGTDFSEGLKGVGAKTALKLAKKGELENKLAKLQEKSSHDIS-- 124
Query: 180 WLYKEARELFRHPEV 194
E RE+F + V
Sbjct: 125 ----EVREIFLNHNV 135
>gi|320580410|gb|EFW94633.1| Single-stranded DNA endonuclease [Ogataea parapolymorpha DL-1]
Length = 1011
Score = 72.4 bits (176), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 36/83 (43%), Positives = 57/83 (68%), Gaps = 7/83 (8%)
Query: 318 RKICIDASMSLYQFLIAVRS-EGNQLMSVDGEPTSHLMGTFYRTIRLVEHGLKPIYVFDG 376
+++ +DAS+ +YQFL AVR +GNQL++ SH++G F R +L+ G+KP++VFDG
Sbjct: 25 KRLAVDASIWIYQFLKAVRDVQGNQLIN------SHIVGFFRRICKLLYFGIKPVFVFDG 78
Query: 377 KPPTLKSGELNKRMEKREDAQKA 399
P LK ++KR EKRE +++
Sbjct: 79 GAPLLKKQTISKRREKREGSKET 101
Score = 68.2 bits (165), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 38/103 (36%), Positives = 61/103 (59%), Gaps = 3/103 (2%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVLE 120
AP EAEAQCA +++ G V T+D D FG + + ++M F+E K V+ + +E +
Sbjct: 747 APMEAEAQCAELLRLGLVDGIITDDSDCFLFGGDRVYKNM-FNE--KNFVECYQMEDLER 803
Query: 121 GMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIE 163
+ L IDL +LLG DY + I+G+G A+E++ E ++E
Sbjct: 804 DLGLDRRMLIDLALLLGSDYTEGIKGVGKVAAMEILAEFGTLE 846
Score = 39.3 bits (90), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 21/31 (67%)
Query: 202 FIDLCILLGCDYCDSIRGIGPKRAIELLYSF 232
IDL +LLG DY + I+G+G A+E+L F
Sbjct: 812 LIDLALLLGSDYTEGIKGVGKVAAMEILAEF 842
Score = 39.3 bits (90), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 24/35 (68%)
Query: 232 FIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIE 266
IDL +LLG DY + I+G+G A+E++ E ++E
Sbjct: 812 LIDLALLLGSDYTEGIKGVGKVAAMEILAEFGTLE 846
>gi|66802930|ref|XP_635308.1| 5'3'-exonuclease N- and I-domain-containing protein [Dictyostelium
discoideum AX4]
gi|74851348|sp|Q54ED2.1|EXO1_DICDI RecName: Full=Exonuclease 1
gi|60463584|gb|EAL61769.1| 5'3'-exonuclease N- and I-domain-containing protein [Dictyostelium
discoideum AX4]
Length = 1046
Score = 72.4 bits (176), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 51/148 (34%), Positives = 74/148 (50%), Gaps = 17/148 (11%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVLE 120
AP EA+AQ + G+V A TED D + FG+ H+ F + QE E L
Sbjct: 147 APYEADAQLTYLSITGQVDAIITEDSDLVAFGAT----HIIFKMDKYGYAQEIKTED-LG 201
Query: 121 GMELSHEEFID--------LCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTK 172
+ +FID +CIL GCDY S+ G+G K + +L+K+HR IEK+ + + +
Sbjct: 202 SCKKDGYDFIDFNQTMLRQMCILSGCDYLPSLSGMGLKTSFKLLKQHRDIEKVFKYLKRE 261
Query: 173 KYTVPEGW---LYKEARELFRHPEVADP 197
K + + YK A F+H V DP
Sbjct: 262 KSNFSQEYEQQFYK-ADFTFKHQRVFDP 288
Score = 55.1 bits (131), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 34/100 (34%), Positives = 53/100 (53%), Gaps = 12/100 (12%)
Query: 230 YSFID--------LCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPE 281
Y FID +CIL GCDY S+ G+G K + +L+K+HR IEK+ + + +K +
Sbjct: 208 YDFIDFNQTMLRQMCILSGCDYLPSLSGMGLKTSFKLLKQHRDIEKVFKYLKREKSNFSQ 267
Query: 282 GW---LYKEARELFRHPEIADPETIELVADVAPSSIRESR 318
+ YK A F+H + DP + L + +I +SR
Sbjct: 268 EYEQQFYK-ADFTFKHQRVFDPVSRILTTLLPLPTIIDSR 306
>gi|395855341|ref|XP_003800124.1| PREDICTED: exonuclease 1 [Otolemur garnettii]
Length = 835
Score = 72.0 bits (175), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 54/153 (35%), Positives = 80/153 (52%), Gaps = 9/153 (5%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFG-SNILLRHMTFSEARKLPVQEFHLEKVL 119
AP EA+AQ A + KAG V A TED D L FG ++L+ F ++ + K L
Sbjct: 147 APYEADAQLAYLNKAGIVQAIITEDSDLLAFGCKKVILKMDQFGNGLEIDQARLGMCKQL 206
Query: 120 EGMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIK--EHRSIEKILENID---TKKY 174
M + E+F +CIL GCDY S+RGIG +A ++++ + I K+++ I
Sbjct: 207 GDM-FTEEKFRYMCILSGCDYLPSLRGIGLAKACKVLRLANNPDIVKVIKKIGHYLKMNI 265
Query: 175 TVPEGWL--YKEARELFRHPEVADPETIEFIDL 205
TVPE ++ + A F + V DP T + I L
Sbjct: 266 TVPEDYIKGFIRANNTFLYQLVFDPITRKLIPL 298
Score = 42.4 bits (98), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 31/107 (28%), Positives = 57/107 (53%), Gaps = 14/107 (13%)
Query: 235 LCILLGCDYCDSIRGIGPKRAIELIK--EHRSIEKILENID---TKKYTVPEGWL--YKE 287
+CIL GCDY S+RGIG +A ++++ + I K+++ I TVPE ++ +
Sbjct: 218 MCILSGCDYLPSLRGIGLAKACKVLRLANNPDIVKVIKKIGHYLKMNITVPEDYIKGFIR 277
Query: 288 ARELFRHPEIADPETIELVA------DVAPSSIRESRKICIDASMSL 328
A F + + DP T +L+ D+ P ++ + + +D S++L
Sbjct: 278 ANNTFLYQLVFDPITRKLIPLNAYEDDIDPETLSYAGRY-VDNSIAL 323
>gi|429329613|gb|AFZ81372.1| DNA-repair protein xp-G, putative [Babesia equi]
Length = 839
Score = 72.0 bits (175), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 36/107 (33%), Positives = 62/107 (57%), Gaps = 4/107 (3%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVLE 120
AP EAE+QCA + ++G YA T+D DAL FG+N +L++ S ++ + E++
Sbjct: 548 APSEAESQCAHLNESGACYAVITDDSDALVFGANRVLKNFYNSNIFEV----YTSERLFS 603
Query: 121 GMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILE 167
+ + +E + I+ GCDY I+G+G A+E+IK + + + E
Sbjct: 604 QLGIGRQELALIAIICGCDYTTGIKGVGIINALEIIKAYPTFNDLYE 650
Score = 44.3 bits (103), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 31/73 (42%), Positives = 38/73 (52%), Gaps = 10/73 (13%)
Query: 318 RKICIDASMSLYQFLIAVRSEGNQLMSVDGEPTSHLMGTFY-RTIRLVEHGLKPIYVFDG 376
+K IDAS L L SE N D ++G F+ R L+E G+KPI+VFDG
Sbjct: 25 KKCAIDASFWLSHCL---ASESNMRHGGD------VIGVFFLRICYLLEKGIKPIFVFDG 75
Query: 377 KPPTLKSGELNKR 389
KPP K L KR
Sbjct: 76 KPPVAKRKTLIKR 88
>gi|392562036|gb|EIW55217.1| PIN domain-like protein [Trametes versicolor FP-101664 SS1]
Length = 525
Score = 72.0 bits (175), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 39/108 (36%), Positives = 62/108 (57%), Gaps = 4/108 (3%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVLE 120
P EAEA A++V G A+ED D L + + L+R++T S + + + VL+
Sbjct: 340 GPFEAEALAASLVIHGYADYVASEDTDVLVYEAP-LIRNITSSSGPLVLISGADVRTVLQ 398
Query: 121 GMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILEN 168
L +ID +LLG D+ I+ +GP RA++ I+EH SIE++LE+
Sbjct: 399 ---LDRPGYIDFALLLGTDFSQRIKNVGPARALKFIREHGSIERVLEH 443
Score = 52.4 bits (124), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 19/40 (47%), Positives = 30/40 (75%)
Query: 232 FIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILEN 271
+ID +LLG D+ I+ +GP RA++ I+EH SIE++LE+
Sbjct: 404 YIDFALLLGTDFSQRIKNVGPARALKFIREHGSIERVLEH 443
>gi|344228751|gb|EGV60637.1| hypothetical protein CANTEDRAFT_132346 [Candida tenuis ATCC 10573]
Length = 960
Score = 72.0 bits (175), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 42/110 (38%), Positives = 65/110 (59%), Gaps = 3/110 (2%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVLE 120
AP EAEAQC ++K G V T+D D FG + + ++M F++ K V+ + E V
Sbjct: 715 APMEAEAQCVELLKLGLVDGIVTDDSDTFLFGGDRVYKNM-FNQ--KQFVECYLSEDVSG 771
Query: 121 GMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENID 170
+ LS E+ I+L +LLG DY + ++GIGP A+E++ E S+ + E D
Sbjct: 772 KLGLSQEKLIELGLLLGSDYTEGVKGIGPVLAMEILAEFGSLHQFKEWFD 821
Score = 69.7 bits (169), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 38/87 (43%), Positives = 55/87 (63%), Gaps = 11/87 (12%)
Query: 318 RKICIDASMSLYQFLIAVR-SEGNQLMSVDGEPTSHLMGTFYRTIRLVEHGLKPIYVFDG 376
+++ +DAS+ +YQFL AVR SEGN L S SH++G F R +L+ G++P+++FDG
Sbjct: 25 KRLAVDASIWIYQFLKAVRDSEGNTLHS------SHIVGFFRRICKLLYFGIQPVFIFDG 78
Query: 377 KPPTLKSGELNKRME----KREDAQKA 399
P LK + KR E KREDA +
Sbjct: 79 GAPALKRDTIKKRKERRDGKREDASET 105
>gi|123494006|ref|XP_001326419.1| XPG I-region family protein [Trichomonas vaginalis G3]
gi|121909333|gb|EAY14196.1| XPG I-region family protein [Trichomonas vaginalis G3]
Length = 414
Score = 72.0 bits (175), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 48/155 (30%), Positives = 76/155 (49%), Gaps = 7/155 (4%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVLE 120
AP EA+AQ + K+G V A +ED D + + L + F + V + + VL+
Sbjct: 147 APYEADAQLVYLAKSGYVDAVLSEDSDLIAYQCPTTL--LKFDDTYH--VLQIDFQNVLK 202
Query: 121 GMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENID-TKKYTVPEG 179
+ L + F LCIL GCDY D I +GPK A++ +K+ K+++ + K+TVP+
Sbjct: 203 LIGLPADTFTSLCILAGCDYIDHIDKLGPKTALKFLKDKNDPHKVIDMVKLNSKFTVPDD 262
Query: 180 WLYK--EARELFRHPEVADPETIEFIDLCILLGCD 212
+ K +A F+ P T E + L D
Sbjct: 263 YHSKFDQALTTFKCARAYSPLTQELVFLSTPPAID 297
Score = 58.9 bits (141), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 46/149 (30%), Positives = 72/149 (48%), Gaps = 13/149 (8%)
Query: 200 IEFIDLCILLGCDYCDSIRGIGPKRAIELLYSFIDLCILLGCDYCDSIRGIGPKRAIELI 259
++F D +L D+ + ++ IG +F LCIL GCDY D I +GPK A++ +
Sbjct: 184 LKFDDTYHVLQIDFQNVLKLIGLPAD-----TFTSLCILAGCDYIDHIDKLGPKTALKFL 238
Query: 260 KEHRSIEKILENID-TKKYTVPEGWLYK--EARELFRHPEIADPETIELVADVAPSSIRE 316
K+ K+++ + K+TVP+ + K +A F+ P T ELV P +I
Sbjct: 239 KDKNDPHKVIDMVKLNSKFTVPDDYHSKFDQALTTFKCARAYSPLTQELVFLSTPPAIDT 298
Query: 317 SRKICIDASMSLYQF--LIAVRSEGNQLM 343
S + A MS Q L+ R N L+
Sbjct: 299 S---FLGAEMSENQLIDLVKGRISANTLL 324
>gi|392561830|gb|EIW55011.1| PIN domain-like protein [Trametes versicolor FP-101664 SS1]
Length = 320
Score = 71.6 bits (174), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 54/160 (33%), Positives = 81/160 (50%), Gaps = 10/160 (6%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFG-SNILLR-HMTFSEARKLPVQEFHL--E 116
AP EA+AQ A + + G V TED D L FG N+L + S + ++F
Sbjct: 147 APYEADAQLAYLERIGAVDGIITEDSDLLVFGCKNVLFKLDHAASTVTCIARKDFAAIAS 206
Query: 117 KVLEGMEL---SHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTK- 172
G+ L S +F + IL GCDY SI GIG K A L+++H+++E L + +
Sbjct: 207 TAAGGLSLVGWSDAQFRTMAILSGCDYLPSIPGIGLKTAWTLLRKHKTVENTLSALRLEG 266
Query: 173 KYTVPEGWL--YKEARELFRHPEVADPETIEFIDLCILLG 210
K +P+G+L ++ A ++F H V DP + L L G
Sbjct: 267 KKKIPQGYLDAFRLAEKVFLHQRVYDPAQGCLVHLTPLPG 306
Score = 52.8 bits (125), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 44/72 (61%), Gaps = 3/72 (4%)
Query: 232 FIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTK-KYTVPEGWL--YKEA 288
F + IL GCDY SI GIG K A L+++H+++E L + + K +P+G+L ++ A
Sbjct: 222 FRTMAILSGCDYLPSIPGIGLKTAWTLLRKHKTVENTLSALRLEGKKKIPQGYLDAFRLA 281
Query: 289 RELFRHPEIADP 300
++F H + DP
Sbjct: 282 EKVFLHQRVYDP 293
>gi|242211748|ref|XP_002471711.1| predicted protein [Postia placenta Mad-698-R]
gi|220729267|gb|EED83145.1| predicted protein [Postia placenta Mad-698-R]
Length = 642
Score = 71.6 bits (174), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 38/106 (35%), Positives = 61/106 (57%), Gaps = 4/106 (3%)
Query: 62 PCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVLEG 121
P EAEA +A+V G A+ED D L + + L+R++T RK P+ V E
Sbjct: 459 PFEAEALASALVLNGYADYVASEDTDVLVYDAP-LIRNIT---NRKGPLVVISGTDVREH 514
Query: 122 MELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILE 167
+ L F+D ++LG D+ I+ +GP RA++ I+E+ SIE+++E
Sbjct: 515 LRLDRSSFVDFALMLGTDFSQRIKNVGPARALKFIREYGSIERVIE 560
Score = 50.4 bits (119), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 30/40 (75%)
Query: 231 SFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILE 270
SF+D ++LG D+ I+ +GP RA++ I+E+ SIE+++E
Sbjct: 521 SFVDFALMLGTDFSQRIKNVGPARALKFIREYGSIERVIE 560
>gi|301103478|ref|XP_002900825.1| exonuclease 1, putative [Phytophthora infestans T30-4]
gi|262101580|gb|EEY59632.1| exonuclease 1, putative [Phytophthora infestans T30-4]
Length = 401
Score = 71.6 bits (174), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 49/149 (32%), Positives = 73/149 (48%), Gaps = 4/149 (2%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSE-ARKLPVQEFHLEKVL 119
AP EA+AQ A +VK G TED D L FG +L M A+++ K +
Sbjct: 147 APYEADAQLAYLVKNGLADGVITEDSDCLPFGCQTVLFKMDRDNIAQEIQTANLKKNKGM 206
Query: 120 EGMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTK-KYTVPE 178
+ + F+++CI GCDY SI G G K+A +K+H S KI+ + + K +P
Sbjct: 207 SFHMFTEQMFLEMCIFSGCDYLPSIPGFGLKKAYTAMKQHGSFAKIVRALRLEGKVRIPA 266
Query: 179 GWL--YKEARELFRHPEVADPETIEFIDL 205
+ +++A FRH V P E + L
Sbjct: 267 TYEEDFRKAVLTFRHQRVYCPTKKELVPL 295
Score = 49.3 bits (116), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 43/78 (55%), Gaps = 3/78 (3%)
Query: 232 FIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTK-KYTVPEGWL--YKEA 288
F+++CI GCDY SI G G K+A +K+H S KI+ + + K +P + +++A
Sbjct: 216 FLEMCIFSGCDYLPSIPGFGLKKAYTAMKQHGSFAKIVRALRLEGKVRIPATYEEDFRKA 275
Query: 289 RELFRHPEIADPETIELV 306
FRH + P ELV
Sbjct: 276 VLTFRHQRVYCPTKKELV 293
>gi|189202272|ref|XP_001937472.1| DNA-repair protein rad13 [Pyrenophora tritici-repentis Pt-1C-BFP]
gi|187984571|gb|EDU50059.1| DNA-repair protein rad13 [Pyrenophora tritici-repentis Pt-1C-BFP]
Length = 1222
Score = 71.6 bits (174), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 54/176 (30%), Positives = 84/176 (47%), Gaps = 31/176 (17%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVLE 120
AP EAEAQCA +V G V T+D D FG + ++M F+ A+ V+ + + +
Sbjct: 957 APMEAEAQCAELVNLGLVDGIVTDDSDTFLFGGTRVYKNM-FNAAKF--VECYLAQDLTS 1013
Query: 121 GMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIE------------KILEN 168
L+ E+ ID+ LLG DY I GIGP A+E++ E +++E +I ++
Sbjct: 1014 EFNLTREKMIDIAQLLGSDYTTGIPGIGPVTALEILSEFQTLEAFRTWWDGVQSGQIKKD 1073
Query: 169 IDTK-------------KYTVPEGWLYKEARELFRHPEV-ADPETIEF--IDLCIL 208
D K K +P + + + HPEV +DPE ++ DL L
Sbjct: 1074 EDAKNPFRKKFRKNQGTKLFLPPNFPDPRVTDAYLHPEVDSDPEPFQWGVPDLAAL 1129
Score = 65.5 bits (158), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 37/90 (41%), Positives = 55/90 (61%), Gaps = 11/90 (12%)
Query: 318 RKICIDASMSLYQFLIAVRS-EGNQLMSVDGEPTSHLMGTFYRTIRLVEHGLKPIYVFDG 376
+++ +DAS+ +YQFL AVR EGN L + SH++G F R +L+ G+KP++VFDG
Sbjct: 25 KRLAVDASIWIYQFLKAVRDKEGNALRN------SHIVGFFRRVCKLLFIGIKPVFVFDG 78
Query: 377 KPPTLK----SGELNKRMEKREDAQKALAK 402
P LK S ++R +REDA + K
Sbjct: 79 GAPALKRQTISNRKSRREGRREDAVRTAGK 108
>gi|357124321|ref|XP_003563849.1| PREDICTED: exonuclease 1-like [Brachypodium distachyon]
Length = 556
Score = 71.6 bits (174), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 44/147 (29%), Positives = 78/147 (53%), Gaps = 12/147 (8%)
Query: 61 APCEAEAQCAAMVKA----GKVYATATEDMDALTFG-SNILLRHMTFSEARKLPVQEFHL 115
AP EA+AQ A + G + A TED D + +G + I+ + F + + + +
Sbjct: 150 APYEADAQLAYLATLDADQGGIAAVITEDSDLIAYGCTAIIFKMDRFGNGEEF-IMKKTM 208
Query: 116 EKVLEGM---ELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDT- 171
E V +G+ + F +C+L GCD+ S+ GIG KRA LI ++++I+++L +
Sbjct: 209 ETVKDGLSFKDFDQNLFTGMCVLAGCDFLPSVPGIGTKRAYSLISKYKNIDRVLSTLKLG 268
Query: 172 KKYTVPEGW--LYKEARELFRHPEVAD 196
K+Y+VP+ + + + +F H V D
Sbjct: 269 KRYSVPDDYSDSFWKTLAVFNHARVYD 295
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 44/71 (61%), Gaps = 3/71 (4%)
Query: 232 FIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDT-KKYTVPEGW--LYKEA 288
F +C+L GCD+ S+ GIG KRA LI ++++I+++L + K+Y+VP+ + + +
Sbjct: 225 FTGMCVLAGCDFLPSVPGIGTKRAYSLISKYKNIDRVLSTLKLGKRYSVPDDYSDSFWKT 284
Query: 289 RELFRHPEIAD 299
+F H + D
Sbjct: 285 LAVFNHARVYD 295
>gi|389642679|ref|XP_003718972.1| DNA-repair protein rad13 [Magnaporthe oryzae 70-15]
gi|351641525|gb|EHA49388.1| DNA-repair protein rad13 [Magnaporthe oryzae 70-15]
gi|440472732|gb|ELQ41574.1| DNA-repair protein rad13 [Magnaporthe oryzae Y34]
gi|440485125|gb|ELQ65111.1| DNA-repair protein rad13 [Magnaporthe oryzae P131]
Length = 1269
Score = 71.6 bits (174), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 62/205 (30%), Positives = 93/205 (45%), Gaps = 39/205 (19%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVLE 120
AP EAEAQCA +V+ G V T+D D FG + ++M F+ + + E +L LE
Sbjct: 931 APMEAEAQCAELVRLGLVDGIVTDDSDTFLFGGTRVYKNM-FNGNKFV---ECYLASDLE 986
Query: 121 G-MELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEH-------------RSIEKIL 166
+ LS E I L LLG DY D + G+GP A+E++ E R ++ L
Sbjct: 987 KELSLSQENLISLAQLLGSDYTDGLPGVGPVTAVEILSEFPGPDGLSRFADWWRQVQSSL 1046
Query: 167 ENIDTKKYT---------------VPEGWLYKEARELFRHPEV-ADPETIEF--IDLCIL 208
N+ T ++ +P G+ E + PEV +DPE ++ DL L
Sbjct: 1047 -NVSTDGWSSFLRKFRKSQATRLFLPPGFPSPAVPEAYLKPEVDSDPEPFQWGAPDLSGL 1105
Query: 209 LGCDYCDSIRGIGPKRAIELLYSFI 233
D+ + G +R E+L I
Sbjct: 1106 R--DFLMATIGWSQERTDEVLVPVI 1128
Score = 62.0 bits (149), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 31/70 (44%), Positives = 45/70 (64%), Gaps = 7/70 (10%)
Query: 318 RKICIDASMSLYQFLIAVRS-EGNQLMSVDGEPTSHLMGTFYRTIRLVEHGLKPIYVFDG 376
+++ +DAS+ +YQFL AVR EGN L + SH++G F R +L+ G+KP++VFDG
Sbjct: 25 KRLAVDASIWIYQFLKAVRDKEGNALRN------SHVIGFFRRICKLLWFGIKPVFVFDG 78
Query: 377 KPPTLKSGEL 386
P LK L
Sbjct: 79 GAPVLKRATL 88
>gi|426199083|gb|EKV49008.1| hypothetical protein AGABI2DRAFT_217997 [Agaricus bisporus var.
bisporus H97]
Length = 1160
Score = 71.6 bits (174), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 39/105 (37%), Positives = 60/105 (57%), Gaps = 3/105 (2%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVLE 120
AP EAEAQCA +V G V T+D D FG+ + ++M F++++ V+ F L +
Sbjct: 803 APMEAEAQCAELVSLGLVDGVITDDSDVFLFGAQRVYKNM-FNQSKT--VELFLLSDLER 859
Query: 121 GMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKI 165
+ L + + L LLG DY D + G+GP A+EL+KE + E +
Sbjct: 860 ELGLDRDTLVRLAYLLGSDYTDGLSGVGPVVAMELLKEFPNKEGL 904
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 55/92 (59%), Gaps = 7/92 (7%)
Query: 316 ESRKICIDASMSLYQFLIAVRS-EGNQLMSVDGEPTSHLMGTFYRTIRLVEHGLKPIYVF 374
E + + ID+S+ +YQF +R EG L++ +H++G R +L+ +G+KP++VF
Sbjct: 23 EGKTMAIDSSIWIYQFQATMRDKEGRGLVN------AHVLGFLRRITKLLFYGIKPVFVF 76
Query: 375 DGKPPTLKSGELNKRMEKREDAQKALAKAQEQ 406
DG P +K L++R +K+ A + A+ E+
Sbjct: 77 DGGAPVIKRATLSERKKKKSGAVLSHARIAER 108
>gi|409077739|gb|EKM78104.1| hypothetical protein AGABI1DRAFT_61094 [Agaricus bisporus var.
burnettii JB137-S8]
Length = 1128
Score = 71.2 bits (173), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 39/105 (37%), Positives = 60/105 (57%), Gaps = 3/105 (2%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVLE 120
AP EAEAQCA +V G V T+D D FG+ + ++M F++++ V+ F L +
Sbjct: 771 APMEAEAQCAELVSLGLVDGVITDDSDVFLFGAQRVYKNM-FNQSKT--VELFLLSDLER 827
Query: 121 GMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKI 165
+ L + + L LLG DY D + G+GP A+EL+KE + E +
Sbjct: 828 ELGLDRDTLVRLAYLLGSDYTDGLSGVGPVVAMELLKEFPNKEGL 872
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 55/92 (59%), Gaps = 7/92 (7%)
Query: 316 ESRKICIDASMSLYQFLIAVRS-EGNQLMSVDGEPTSHLMGTFYRTIRLVEHGLKPIYVF 374
E + + ID+S+ +YQF +R EG L++ +H++G R +L+ +G+KP++VF
Sbjct: 23 EGKTMAIDSSIWIYQFQATMRDKEGRGLVN------AHVLGFLRRITKLLFYGIKPVFVF 76
Query: 375 DGKPPTLKSGELNKRMEKREDAQKALAKAQEQ 406
DG P +K L++R +K+ A + A+ E+
Sbjct: 77 DGGAPVIKRATLSERKKKKSGAVLSHARIAER 108
>gi|190346361|gb|EDK38425.2| hypothetical protein PGUG_02523 [Meyerozyma guilliermondii ATCC
6260]
Length = 1035
Score = 71.2 bits (173), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 39/116 (33%), Positives = 66/116 (56%), Gaps = 3/116 (2%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVLE 120
AP EAEAQCA ++K G V T+D D FG + ++M F++ K V+ + ++++
Sbjct: 793 APMEAEAQCAELMKLGLVDGIITDDSDCFLFGGQKVYKNM-FNQ--KQYVECYFIDEISH 849
Query: 121 GMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTV 176
+ L + I+L +LLG DY + I+GIGP A+E++ E ++ +D +V
Sbjct: 850 KVGLDQKNLIELALLLGSDYTEGIKGIGPVMAVEILAEFSNLTNFKNWLDKNSISV 905
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 35/78 (44%), Positives = 51/78 (65%), Gaps = 7/78 (8%)
Query: 318 RKICIDASMSLYQFLIAVR-SEGNQLMSVDGEPTSHLMGTFYRTIRLVEHGLKPIYVFDG 376
+K+ +DAS+ +YQFL AVR S+GN L P SH++G F R +L+ G+ P++VFDG
Sbjct: 25 KKLAVDASIWIYQFLKAVRDSDGNSL------PQSHIVGFFRRICKLLYFGILPVFVFDG 78
Query: 377 KPPTLKSGELNKRMEKRE 394
P LK + KR E+R+
Sbjct: 79 GAPALKRQTILKRRERRQ 96
Score = 45.4 bits (106), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 28/101 (27%), Positives = 45/101 (44%), Gaps = 6/101 (5%)
Query: 202 FIDLCILLGCDYCDSIRGIGPKRAIELLYSFIDLCILLGCDYCDSIRGIGPKRAIELIKE 261
I+L +LLG DY + I+GIGP A+E+L F +L +SI + L K
Sbjct: 858 LIELALLLGSDYTEGIKGIGPVMAVEILAEFSNLTNFKNWLDKNSISVVDESELSPLKK- 916
Query: 262 HRSIEKILENIDTKKYTVPEGWLYKEARELFRHPEIADPET 302
+L + K +P + + + +PE+ D T
Sbjct: 917 -----SLLNRVKNGKLFLPNSFPDTVVFDAYLNPEVDDDTT 952
Score = 42.7 bits (99), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 29/49 (59%)
Query: 231 SFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTV 279
+ I+L +LLG DY + I+GIGP A+E++ E ++ +D +V
Sbjct: 857 NLIELALLLGSDYTEGIKGIGPVMAVEILAEFSNLTNFKNWLDKNSISV 905
>gi|146417652|ref|XP_001484794.1| hypothetical protein PGUG_02523 [Meyerozyma guilliermondii ATCC
6260]
Length = 1035
Score = 71.2 bits (173), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 39/116 (33%), Positives = 66/116 (56%), Gaps = 3/116 (2%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVLE 120
AP EAEAQCA ++K G V T+D D FG + ++M F++ K V+ + ++++
Sbjct: 793 APMEAEAQCAELMKLGLVDGIITDDSDCFLFGGQKVYKNM-FNQ--KQYVECYFIDEISH 849
Query: 121 GMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTV 176
+ L + I+L +LLG DY + I+GIGP A+E++ E ++ +D +V
Sbjct: 850 KVGLDQKNLIELALLLGSDYTEGIKGIGPVMAVEILAEFSNLTNFKNWLDKNSISV 905
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 35/78 (44%), Positives = 51/78 (65%), Gaps = 7/78 (8%)
Query: 318 RKICIDASMSLYQFLIAVR-SEGNQLMSVDGEPTSHLMGTFYRTIRLVEHGLKPIYVFDG 376
+K+ +DAS+ +YQFL AVR S+GN L P SH++G F R +L+ G+ P++VFDG
Sbjct: 25 KKLAVDASIWIYQFLKAVRDSDGNSL------PQSHIVGFFRRICKLLYFGILPVFVFDG 78
Query: 377 KPPTLKSGELNKRMEKRE 394
P LK + KR E+R+
Sbjct: 79 GAPALKRQTILKRRERRQ 96
Score = 45.4 bits (106), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 28/101 (27%), Positives = 45/101 (44%), Gaps = 6/101 (5%)
Query: 202 FIDLCILLGCDYCDSIRGIGPKRAIELLYSFIDLCILLGCDYCDSIRGIGPKRAIELIKE 261
I+L +LLG DY + I+GIGP A+E+L F +L +SI + L K
Sbjct: 858 LIELALLLGSDYTEGIKGIGPVMAVEILAEFSNLTNFKNWLDKNSISVVDESELSPLKK- 916
Query: 262 HRSIEKILENIDTKKYTVPEGWLYKEARELFRHPEIADPET 302
+L + K +P + + + +PE+ D T
Sbjct: 917 -----SLLNRVKNGKLFLPNSFPDTVVFDAYLNPEVDDDTT 952
Score = 42.7 bits (99), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 29/49 (59%)
Query: 231 SFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTV 279
+ I+L +LLG DY + I+GIGP A+E++ E ++ +D +V
Sbjct: 857 NLIELALLLGSDYTEGIKGIGPVMAVEILAEFSNLTNFKNWLDKNSISV 905
>gi|302678719|ref|XP_003029042.1| hypothetical protein SCHCODRAFT_17178 [Schizophyllum commune H4-8]
gi|300102731|gb|EFI94139.1| hypothetical protein SCHCODRAFT_17178 [Schizophyllum commune H4-8]
Length = 316
Score = 71.2 bits (173), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 49/153 (32%), Positives = 79/153 (51%), Gaps = 8/153 (5%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVL- 119
AP EA+AQ A + + G V+A TED D L FG +L + ++ + + V
Sbjct: 147 APYEADAQMAFLERTGAVHAILTEDSDLLVFGCKNVLFKLDHAQCTVVSISRSDFASVTA 206
Query: 120 -EGMEL---SHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTK-KY 174
+G+ L + +F + IL GCDY SI GIG K A +++H++ E+ ++ I + K
Sbjct: 207 CDGVSLVGWTDAQFRTMAILSGCDYLPSIPGIGLKTAAVYVRKHKTAEQCVKAIAREGKK 266
Query: 175 TVPEGWL--YKEARELFRHPEVADPETIEFIDL 205
+P G++ +K A + F H V DP + L
Sbjct: 267 RIPMGYVSQFKLAEQCFLHQRVYDPAREALVHL 299
Score = 48.1 bits (113), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 50/96 (52%), Gaps = 8/96 (8%)
Query: 214 CDSIRGIGPKRAIELLYSFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENID 273
CD + +G A F + IL GCDY SI GIG K A +++H++ E+ ++ I
Sbjct: 207 CDGVSLVGWTDA-----QFRTMAILSGCDYLPSIPGIGLKTAAVYVRKHKTAEQCVKAIA 261
Query: 274 TK-KYTVPEGWL--YKEARELFRHPEIADPETIELV 306
+ K +P G++ +K A + F H + DP LV
Sbjct: 262 REGKKRIPMGYVSQFKLAEQCFLHQRVYDPAREALV 297
Score = 40.0 bits (92), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 33/63 (52%), Gaps = 1/63 (1%)
Query: 347 GEPTSHLMGTFYRTIRLVEH-GLKPIYVFDGKPPTLKSGELNKRMEKREDAQKALAKAQE 405
G+ T + F +R++ H G++P VFDG P K G N+R +KRE++
Sbjct: 49 GKETHKYIDYFMHRVRMLRHNGVEPYIVFDGGPLPAKKGTENERRQKREESLARANMLAA 108
Query: 406 QGK 408
QGK
Sbjct: 109 QGK 111
>gi|50551183|ref|XP_503065.1| YALI0D20240p [Yarrowia lipolytica]
gi|49648933|emb|CAG81257.1| YALI0D20240p [Yarrowia lipolytica CLIB122]
Length = 1115
Score = 71.2 bits (173), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 38/102 (37%), Positives = 57/102 (55%), Gaps = 2/102 (1%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLR-HMTFSEARKLPVQEFHLEKVL 119
AP EAEAQCA +V V TED D F SN +R F + K V+ + ++
Sbjct: 837 APTEAEAQCATLVNLDLVDGVITEDSDVFLFSSNPRMRVFKNFFNSNKY-VECYKTGEIE 895
Query: 120 EGMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRS 161
+ + L ++ +DL +LLG DY D + GIGP A+E++ E ++
Sbjct: 896 QTLNLERKDLVDLALLLGSDYTDGLPGIGPVSAMEILAEFKA 937
Score = 55.8 bits (133), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 39/65 (60%), Gaps = 8/65 (12%)
Query: 318 RKICIDASMSLYQFLIAVRSEGNQLMSVDGEPTSHLMGTFYRTIRLVEHGLKPIYVFDGK 377
++ +DAS+ +YQFL R G + +HL+G F R ++L+ G+KP++VFDG
Sbjct: 25 NRLAVDASIWIYQFLKTTRGAGKK--------NAHLVGFFRRILKLLFLGIKPVFVFDGV 76
Query: 378 PPTLK 382
P LK
Sbjct: 77 APELK 81
Score = 43.5 bits (101), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 16/32 (50%), Positives = 22/32 (68%)
Query: 201 EFIDLCILLGCDYCDSIRGIGPKRAIELLYSF 232
+ +DL +LLG DY D + GIGP A+E+L F
Sbjct: 904 DLVDLALLLGSDYTDGLPGIGPVSAMEILAEF 935
>gi|302415937|ref|XP_003005800.1| DNA-repair protein rad13 [Verticillium albo-atrum VaMs.102]
gi|261355216|gb|EEY17644.1| DNA-repair protein rad13 [Verticillium albo-atrum VaMs.102]
Length = 1209
Score = 71.2 bits (173), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 52/173 (30%), Positives = 78/173 (45%), Gaps = 35/173 (20%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVLE 120
AP EAEAQCA +V+ G V T+D D FG + ++M S + E +L L+
Sbjct: 891 APMEAEAQCAELVRLGLVDGIVTDDSDTFLFGGTRVYKNMFNSNK----LVECYLSSDLD 946
Query: 121 G-MELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKE--------------------- 158
+ LS E+ + + +LLG DY D + G+GP A+E++ E
Sbjct: 947 KELSLSREQLVSIALLLGSDYTDGLPGVGPVTAVEILSEFPESEGGLAAFCHWWADVQGQ 1006
Query: 159 HRSIEKILENIDTKKYT--------VPEGWLYKEARELFRHPEVAD-PETIEF 202
R E N +K+ +P G+ RE + PEV D PET ++
Sbjct: 1007 RRPKEDDAPNAFRRKFRKSQVAKLFLPVGFPNPAVREAYMKPEVDDSPETFQW 1059
Score = 60.1 bits (144), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 29/66 (43%), Positives = 44/66 (66%), Gaps = 7/66 (10%)
Query: 318 RKICIDASMSLYQFLIAVRS-EGNQLMSVDGEPTSHLMGTFYRTIRLVEHGLKPIYVFDG 376
+++ +DAS+ +YQFL AVR EGN L + SH++G F R +L+ G++P++VFDG
Sbjct: 25 KRLAVDASIWIYQFLKAVRDKEGNALRN------SHVVGFFRRICKLLWFGIRPVFVFDG 78
Query: 377 KPPTLK 382
P LK
Sbjct: 79 GAPALK 84
Score = 44.7 bits (104), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 28/107 (26%), Positives = 49/107 (45%), Gaps = 6/107 (5%)
Query: 201 EFIDLCILLGCDYCDSIRGIGPKRAIELLYSFIDLCILLG--CDYCDSIRGIGPKRAIEL 258
+ + + +LLG DY D + G+GP A+E+L F + L C + ++G +R +
Sbjct: 955 QLVSIALLLGSDYTDGLPGVGPVTAVEILSEFPESEGGLAAFCHWWADVQG---QRRPKE 1011
Query: 259 IKEHRSIEKILENIDTKKYTVPEGWLYKEARELFRHPEIAD-PETIE 304
+ + K +P G+ RE + PE+ D PET +
Sbjct: 1012 DDAPNAFRRKFRKSQVAKLFLPVGFPNPAVREAYMKPEVDDSPETFQ 1058
>gi|449503133|ref|XP_004161850.1| PREDICTED: exonuclease 1-like [Cucumis sativus]
Length = 578
Score = 70.9 bits (172), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 54/193 (27%), Positives = 92/193 (47%), Gaps = 21/193 (10%)
Query: 30 NGAKKLLKARSSTTQGRLDSFFTIRRE---EKRKAPCEAEAQCAAMVKAGK----VYATA 82
N A +L + + T + + RE E AP EA+AQ A + G + A
Sbjct: 117 NAASELFQRAVNITPSIANQLIKLLREHDIEFVVAPYEADAQLAYLSSLGTLNGGIAAVI 176
Query: 83 TEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVLEGM-------ELSHEEFIDLCIL 135
TED D + +G + F R +E L+K+ + + E +C+L
Sbjct: 177 TEDSDMIAYGC----KATIFKMDRYGNGEEMMLDKIFDSAGCTPSFKDFDKELLTGMCVL 232
Query: 136 LGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDT-KKYTVPEGW--LYKEARELFRHP 192
GCD+ S+ GIG RA L+ ++R++E+ L + KK +PE + L+++A +F+H
Sbjct: 233 AGCDFLPSVPGIGIARAYALVSKYRNLERALSALKLQKKEQMPEDYFKLFRQAMAVFQHA 292
Query: 193 EVADPETIEFIDL 205
++ D ET + I +
Sbjct: 293 KIYDAETRKLIPM 305
Score = 55.8 bits (133), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 49/75 (65%), Gaps = 3/75 (4%)
Query: 235 LCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDT-KKYTVPEGW--LYKEAREL 291
+C+L GCD+ S+ GIG RA L+ ++R++E+ L + KK +PE + L+++A +
Sbjct: 229 MCVLAGCDFLPSVPGIGIARAYALVSKYRNLERALSALKLQKKEQMPEDYFKLFRQAMAV 288
Query: 292 FRHPEIADPETIELV 306
F+H +I D ET +L+
Sbjct: 289 FQHAKIYDAETRKLI 303
>gi|449439699|ref|XP_004137623.1| PREDICTED: exonuclease 1-like [Cucumis sativus]
Length = 577
Score = 70.9 bits (172), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 54/193 (27%), Positives = 92/193 (47%), Gaps = 21/193 (10%)
Query: 30 NGAKKLLKARSSTTQGRLDSFFTIRRE---EKRKAPCEAEAQCAAMVKAGK----VYATA 82
N A +L + + T + + RE E AP EA+AQ A + G + A
Sbjct: 116 NAASELFQRAVNITPSIANQLIKLLREHDIEFVVAPYEADAQLAYLSSLGTLNGGIAAVI 175
Query: 83 TEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVLEGM-------ELSHEEFIDLCIL 135
TED D + +G + F R +E L+K+ + + E +C+L
Sbjct: 176 TEDSDMIAYGC----KATIFKMDRYGNGEEMMLDKIFDSAGCTPSFKDFDKELLTGMCVL 231
Query: 136 LGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDT-KKYTVPEGW--LYKEARELFRHP 192
GCD+ S+ GIG RA L+ ++R++E+ L + KK +PE + L+++A +F+H
Sbjct: 232 AGCDFLPSVPGIGIARAYALVSKYRNLERALSALKLQKKEQMPEDYFKLFRQAMAVFQHA 291
Query: 193 EVADPETIEFIDL 205
++ D ET + I +
Sbjct: 292 KIYDAETRKLIPM 304
Score = 55.8 bits (133), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 49/75 (65%), Gaps = 3/75 (4%)
Query: 235 LCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDT-KKYTVPEGW--LYKEAREL 291
+C+L GCD+ S+ GIG RA L+ ++R++E+ L + KK +PE + L+++A +
Sbjct: 228 MCVLAGCDFLPSVPGIGIARAYALVSKYRNLERALSALKLQKKEQMPEDYFKLFRQAMAV 287
Query: 292 FRHPEIADPETIELV 306
F+H +I D ET +L+
Sbjct: 288 FQHAKIYDAETRKLI 302
>gi|432330136|ref|YP_007248279.1| flap structure-specific endonuclease [Methanoregula formicicum
SMSP]
gi|432136845|gb|AGB01772.1| flap structure-specific endonuclease [Methanoregula formicicum
SMSP]
Length = 333
Score = 70.9 bits (172), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 35/88 (39%), Positives = 52/88 (59%), Gaps = 1/88 (1%)
Query: 321 CIDASMSLYQFLIAVR-SEGNQLMSVDGEPTSHLMGTFYRTIRLVEHGLKPIYVFDGKPP 379
+DA+ +LYQFL +R +G LM G TSHL G +R + G+KP++VFDGKP
Sbjct: 26 AVDANNTLYQFLTIIRQPDGTPLMDRQGRVTSHLSGILFRISNFMAKGIKPVFVFDGKPT 85
Query: 380 TLKSGELNKRMEKREDAQKALAKAQEQG 407
LK + +R + R+ A + +A E+G
Sbjct: 86 QLKQATIEERRKLRDTAGEKWREAVERG 113
Score = 69.3 bits (168), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 46/148 (31%), Positives = 77/148 (52%), Gaps = 22/148 (14%)
Query: 37 KARSSTTQGRLDSFFTIRREEKR----------KAPCEAEAQCAAMVKAGKVYATATEDM 86
+ARSST R+D TI R + +AP E EAQ A MV G ++D
Sbjct: 121 QARSST---RVDD--TIIRTSRELLGLMGIPVVQAPGEGEAQAAFMVARGDCLYVISQDY 175
Query: 87 DALTFGSNILLRHMTFSEARKLPVQEFH-------LEKVLEGMELSHEEFIDLCILLGCD 139
D L FG+ L+R++T S RK+ ++ L + L G++L+ E+ I++ IL+G D
Sbjct: 176 DTLLFGAPTLVRNLTVSGKRKIRGRQITVNPERIVLAETLAGLKLTREQLIEIGILVGTD 235
Query: 140 YCDSIRGIGPKRAIELIKEHRSIEKILE 167
+ + G+G K ++++++ K+ E
Sbjct: 236 FNPGVEGVGAKTGLKIVQKGEFAAKLKE 263
>gi|242054579|ref|XP_002456435.1| hypothetical protein SORBIDRAFT_03g036255 [Sorghum bicolor]
gi|241928410|gb|EES01555.1| hypothetical protein SORBIDRAFT_03g036255 [Sorghum bicolor]
Length = 823
Score = 70.9 bits (172), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 49/165 (29%), Positives = 84/165 (50%), Gaps = 4/165 (2%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFG-SNILLRHMTFSEARKLPVQEFHLEKVL 119
AP EA+AQ + V A TED D + FG S I+ + F + + + + L
Sbjct: 147 APYEADAQMTFLSVNKLVDAVITEDSDLIPFGCSRIIFKMDKFGQGVEFQITRLERNREL 206
Query: 120 EGMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEG 179
+ + + +++CIL GCDY S+ G+G KRA LI++ + EK+++++ +VP
Sbjct: 207 DFNGFTRQMLLEMCILSGCDYLPSLPGMGVKRAHALIQKLKCHEKVIKHLRYGAVSVPPQ 266
Query: 180 WL--YKEARELFRHPEVADPETIEFIDLCILLGCDYCDSIRGIGP 222
+ +K+A F+ V DP T + I L + D + + +GP
Sbjct: 267 YEEDFKKAIWAFKFQRVYDPATEDIIHLSS-VPHDLIEDLEFLGP 310
Score = 47.8 bits (112), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 47/77 (61%), Gaps = 2/77 (2%)
Query: 232 FIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGWL--YKEAR 289
+++CIL GCDY S+ G+G KRA LI++ + EK+++++ +VP + +K+A
Sbjct: 216 LLEMCILSGCDYLPSLPGMGVKRAHALIQKLKCHEKVIKHLRYGAVSVPPQYEEDFKKAI 275
Query: 290 ELFRHPEIADPETIELV 306
F+ + DP T +++
Sbjct: 276 WAFKFQRVYDPATEDII 292
>gi|351707066|gb|EHB09985.1| Exonuclease 1 [Heterocephalus glaber]
Length = 838
Score = 70.9 bits (172), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 51/145 (35%), Positives = 77/145 (53%), Gaps = 9/145 (6%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFG-SNILLRHMTFSEARKLPVQEFHLEKVL 119
AP EA+AQ A + KAG V A TED D L FG ++L+ F ++ + + L
Sbjct: 147 APYEADAQLAYLNKAGIVQAIITEDSDLLAFGCKKVILKMDQFGNGLEIDQSRLGMCRQL 206
Query: 120 EGMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIK--EHRSIEKILENID---TKKY 174
G + E+F +CIL GCDY S+RGIG +A ++++ + IEK+++ I
Sbjct: 207 -GDVFTEEKFRYMCILSGCDYLSSLRGIGLAKACKVLRLANNPDIEKVIKKIGHYLKMNI 265
Query: 175 TVPEGWL--YKEARELFRHPEVADP 197
TVPE ++ + A F + V DP
Sbjct: 266 TVPEDYIKGFIRANNTFLYQLVFDP 290
Score = 43.5 bits (101), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 33/107 (30%), Positives = 57/107 (53%), Gaps = 14/107 (13%)
Query: 235 LCILLGCDYCDSIRGIGPKRAIELIK--EHRSIEKILENID---TKKYTVPEGWL--YKE 287
+CIL GCDY S+RGIG +A ++++ + IEK+++ I TVPE ++ +
Sbjct: 218 MCILSGCDYLSSLRGIGLAKACKVLRLANNPDIEKVIKKIGHYLKMNITVPEDYIKGFIR 277
Query: 288 ARELFRHPEIADPETIELVA------DVAPSSIRESRKICIDASMSL 328
A F + + DP +LV D+ P ++ + + ID S++L
Sbjct: 278 ANNTFLYQLVFDPIKRKLVPLNAYEDDIDPETLTYAGQY-IDDSIAL 323
>gi|326525617|dbj|BAJ88855.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 906
Score = 70.9 bits (172), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 46/149 (30%), Positives = 78/149 (52%), Gaps = 3/149 (2%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFG-SNILLRHMTFSEARKLPVQEFHLEKVL 119
AP EA+AQ + V A TED D + FG S I+ + F + + + + L
Sbjct: 147 APYEADAQMTFLSVNKLVDAVITEDSDLIPFGCSRIIFKMDKFGQGVEFQITRLERNREL 206
Query: 120 EGMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEG 179
+ + + +++CIL GCDY S+ G+G KRA LI++ +S EK+++++ +VP
Sbjct: 207 DLNGFTKQMLLEMCILSGCDYLPSLPGMGVKRAHALIQKLKSHEKVIKHLRYSAVSVPPQ 266
Query: 180 W--LYKEARELFRHPEVADPETIEFIDLC 206
+ +K+A F+ V DP T + + L
Sbjct: 267 YEENFKKAIWAFQFQRVYDPATEDIVHLS 295
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 48/77 (62%), Gaps = 2/77 (2%)
Query: 232 FIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGW--LYKEAR 289
+++CIL GCDY S+ G+G KRA LI++ +S EK+++++ +VP + +K+A
Sbjct: 216 LLEMCILSGCDYLPSLPGMGVKRAHALIQKLKSHEKVIKHLRYSAVSVPPQYEENFKKAI 275
Query: 290 ELFRHPEIADPETIELV 306
F+ + DP T ++V
Sbjct: 276 WAFQFQRVYDPATEDIV 292
>gi|432106297|gb|ELK32183.1| Exonuclease 1 [Myotis davidii]
Length = 942
Score = 70.9 bits (172), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 66/215 (30%), Positives = 98/215 (45%), Gaps = 17/215 (7%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFG-SNILLRHMTFSEARKLPVQEFHLEKVL 119
AP EA+AQ A + KAG V A TED D L FG ++L+ F ++ + K L
Sbjct: 131 APYEADAQLAYLNKAGIVQAIVTEDSDLLAFGCKKVILKMDQFGNGLEIDQARLGMCKQL 190
Query: 120 EGMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIK--EHRSIEKILENID---TKKY 174
G + E+F +CIL GCDY S+RGIG +A ++++ + I K+++ +
Sbjct: 191 -GDVFTEEKFRYMCILSGCDYLSSLRGIGLAKACKVLRLANNPDIVKVIKKLGHYLKMNI 249
Query: 175 TVPEGWL--YKEARELFRHPEVADPETIEFIDLCILLGCDYCDSIRGIGPKRAIELLYSF 232
TVPE ++ + A F + V DP + + L DY D I A +
Sbjct: 250 TVPEDYIKGFIRANNTFLYQLVFDPIRRKLVPL-----NDYGDDIDPAALSYAGRYIDDS 304
Query: 233 IDLCILLGCDYCDSIRGI---GPKRAIELIKEHRS 264
I L I LG ++ I P A + RS
Sbjct: 305 IALQIALGNKDINTFEQIDDYNPDTATPALSRSRS 339
Score = 40.0 bits (92), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 31/107 (28%), Positives = 57/107 (53%), Gaps = 14/107 (13%)
Query: 235 LCILLGCDYCDSIRGIGPKRAIELIK--EHRSIEKILENID---TKKYTVPEGWL--YKE 287
+CIL GCDY S+RGIG +A ++++ + I K+++ + TVPE ++ +
Sbjct: 202 MCILSGCDYLSSLRGIGLAKACKVLRLANNPDIVKVIKKLGHYLKMNITVPEDYIKGFIR 261
Query: 288 ARELFRHPEIADPETIELVA------DVAPSSIRESRKICIDASMSL 328
A F + + DP +LV D+ P+++ + + ID S++L
Sbjct: 262 ANNTFLYQLVFDPIRRKLVPLNDYGDDIDPAALSYAGRY-IDDSIAL 307
>gi|328774021|gb|EGF84058.1| hypothetical protein BATDEDRAFT_2594, partial [Batrachochytrium
dendrobatidis JAM81]
Length = 284
Score = 70.9 bits (172), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 42/122 (34%), Positives = 71/122 (58%), Gaps = 6/122 (4%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVLE 120
A EAE+QCA + K G V T+D D FG ++ ++M F++ R V+ + ++++ E
Sbjct: 119 ATTEAESQCAFLQKQGLVEGIVTDDSDVFVFGGEVVYKNM-FTQTRS--VEIYTMDRLQE 175
Query: 121 GMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIE--KILENIDTKKYTVPE 178
+ LS E+ I L LLG DY + GIGP ++E++ E +++ K N+ KK +P+
Sbjct: 176 QLGLSREKLILLAYLLGSDYTPGLVGIGPVTSVEILNEWCNLDYSKGGRNL-AKKLDIPD 234
Query: 179 GW 180
G+
Sbjct: 235 GF 236
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 48/83 (57%), Gaps = 5/83 (6%)
Query: 324 ASMSLYQFLIAVRSEGNQLMSVDGEPTSHLMGTFYRTIRLVEHGLKPIYVFDGKPPTLKS 383
AS+ L+QFL A+RS L+ +H++G F R +L+ +G+ P++VFDG P LK
Sbjct: 6 ASIWLHQFLKAMRSRDGNLLH-----GAHIIGFFRRICKLLFYGILPVFVFDGATPALKR 60
Query: 384 GELNKRMEKREDAQKALAKAQEQ 406
+ R +R +++L K E+
Sbjct: 61 QTIASRRHRRATVEQSLRKTAER 83
>gi|71029044|ref|XP_764165.1| DNA repair protein Rad2 [Theileria parva strain Muguga]
gi|68351119|gb|EAN31882.1| DNA repair protein rad2, putative [Theileria parva]
Length = 835
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 34/107 (31%), Positives = 64/107 (59%), Gaps = 4/107 (3%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVLE 120
AP EAE+QCA M ++GK YA ++D D+L FG+ LL++ + +L + L+++
Sbjct: 545 APSEAESQCAYMNRSGKCYAVISDDSDSLVFGAKCLLKNFYNDKVFEL----YTLDRIRR 600
Query: 121 GMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILE 167
+ + ++ + I+ GCDY ++GIG A+E+IK + + + + +
Sbjct: 601 ELGIGRKQLALIAIICGCDYTTGVKGIGIVNALEVIKAYPTFDDLYD 647
>gi|403340704|gb|EJY69645.1| XPG family protein [Oxytricha trifallax]
Length = 666
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 49/162 (30%), Positives = 82/162 (50%), Gaps = 20/162 (12%)
Query: 60 KAPCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVL 119
KAP EA+AQ A +V+ G +ED D + FG LL + F + Q F + +
Sbjct: 115 KAPYEADAQIAYLVREGIADIAISEDSDLIAFGCPRLLMKLDF----RGICQVFDADDFI 170
Query: 120 EGMELS-----------HEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILEN 168
+ +++ ++F+ +CI+ GCDY SI+ +G K A++ ++H +IEK++E
Sbjct: 171 QNNKITDASLKFLQKANRKQFVSICIMGGCDYLPSIQKVGLKIAVKFFQKHETIEKVIEA 230
Query: 169 IDTKK-YTVPEGWLYKEA----RELFRHPEVADPETIEFIDL 205
+ YT + Y EA + LF + V +P T +F L
Sbjct: 231 MRANSTYTQNVPFNYVEALLKVQTLFFYQTVFNPRTNKFTSL 272
Score = 49.3 bits (116), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 46/81 (56%), Gaps = 5/81 (6%)
Query: 232 FIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKK-YTVPEGWLYKEA-- 288
F+ +CI+ GCDY SI+ +G K A++ ++H +IEK++E + YT + Y EA
Sbjct: 191 FVSICIMGGCDYLPSIQKVGLKIAVKFFQKHETIEKVIEAMRANSTYTQNVPFNYVEALL 250
Query: 289 --RELFRHPEIADPETIELVA 307
+ LF + + +P T + +
Sbjct: 251 KVQTLFFYQTVFNPRTNKFTS 271
>gi|390599013|gb|EIN08410.1| PIN domain-like protein [Punctularia strigosozonata HHB-11173 SS5]
Length = 518
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 37/105 (35%), Positives = 62/105 (59%), Gaps = 4/105 (3%)
Query: 64 EAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVLEGME 123
EAEA +A+V +G+ A+ED D L + + LLR++T +R +P+ V +
Sbjct: 332 EAEALASALVLSGRADYVASEDTDVLIYEAP-LLRNIT---SRNVPLSLLSGSDVRSVLS 387
Query: 124 LSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILEN 168
L+ +ID +LLG D+ I+ +GP RA+ I+ + SIE+IL++
Sbjct: 388 LTRSSYIDFALLLGTDFSQRIKNVGPARALRFIRSYGSIEQILKH 432
Score = 47.0 bits (110), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 29/41 (70%)
Query: 231 SFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILEN 271
S+ID +LLG D+ I+ +GP RA+ I+ + SIE+IL++
Sbjct: 392 SYIDFALLLGTDFSQRIKNVGPARALRFIRSYGSIEQILKH 432
>gi|395327368|gb|EJF59768.1| PIN domain-like protein [Dichomitus squalens LYAD-421 SS1]
Length = 326
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 49/149 (32%), Positives = 74/149 (49%), Gaps = 12/149 (8%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVLE 120
AP EA+AQ A + + G V TED D L FG +L + + A + V
Sbjct: 147 APYEADAQLAYLERIGLVDGIMTEDSDLLVFGCKNVLFKLDPAAATVTHISRADFAAVAS 206
Query: 121 G---------MELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDT 171
+ S +F + IL GCDY SI GIG K A L+++HR++E +++ +
Sbjct: 207 ADGGGSGLSLLGWSDAQFRTMAILSGCDYLPSIPGIGLKTAWALLRKHRTVENMVDALRL 266
Query: 172 K-KYTVPEGWL--YKEARELFRHPEVADP 197
+ K VP+G+L ++ A +F H V DP
Sbjct: 267 EGKKKVPKGYLDAFRRAERVFMHQRVYDP 295
Score = 55.5 bits (132), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 28/72 (38%), Positives = 45/72 (62%), Gaps = 3/72 (4%)
Query: 232 FIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTK-KYTVPEGWL--YKEA 288
F + IL GCDY SI GIG K A L+++HR++E +++ + + K VP+G+L ++ A
Sbjct: 224 FRTMAILSGCDYLPSIPGIGLKTAWALLRKHRTVENMVDALRLEGKKKVPKGYLDAFRRA 283
Query: 289 RELFRHPEIADP 300
+F H + DP
Sbjct: 284 ERVFMHQRVYDP 295
>gi|293335579|ref|NP_001167749.1| uncharacterized protein LOC100381439 [Zea mays]
gi|223943749|gb|ACN25958.1| unknown [Zea mays]
gi|414880249|tpg|DAA57380.1| TPA: hypothetical protein ZEAMMB73_036244 [Zea mays]
Length = 826
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 46/148 (31%), Positives = 77/148 (52%), Gaps = 3/148 (2%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFG-SNILLRHMTFSEARKLPVQEFHLEKVL 119
AP EA+AQ + V A TED D + FG S I+ + F + + + + L
Sbjct: 147 APYEADAQMTFLSVNKLVDAVITEDSDLIPFGCSRIIFKMDKFGQGVEFQITRLEQNREL 206
Query: 120 EGMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEG 179
+ + + +++CIL GCDY S+ G+G KRA LI++ + EK+++++ +VP
Sbjct: 207 DFNGFTRQMLLEMCILSGCDYLPSLPGMGVKRAHALIQKLKCHEKVIKHLRYGAVSVPPQ 266
Query: 180 WL--YKEARELFRHPEVADPETIEFIDL 205
+ +K+A F+ V DP T + I L
Sbjct: 267 YEEDFKKAIWAFKFQRVYDPATEDIIHL 294
Score = 47.8 bits (112), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 47/77 (61%), Gaps = 2/77 (2%)
Query: 232 FIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGWL--YKEAR 289
+++CIL GCDY S+ G+G KRA LI++ + EK+++++ +VP + +K+A
Sbjct: 216 LLEMCILSGCDYLPSLPGMGVKRAHALIQKLKCHEKVIKHLRYGAVSVPPQYEEDFKKAI 275
Query: 290 ELFRHPEIADPETIELV 306
F+ + DP T +++
Sbjct: 276 WAFKFQRVYDPATEDII 292
>gi|409978729|gb|AFV50340.1| nuclease-VHS inhibit celluar gene expression [Heliothis virescens
ascovirus 3g]
Length = 330
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 46/126 (36%), Positives = 67/126 (53%), Gaps = 10/126 (7%)
Query: 56 EEKRKAPCEAEAQCAAMVKAGKVYATATEDMDALTF-GSNILLRHMTFSEARKLPVQEFH 114
E P EAE CAA++ V A + D D L + G + +L ++ V
Sbjct: 184 ESVVNGPSEAETTCAALMYTRMVDAVYSRDYDMLAYTGVDRVLYSISLPRCTYTCVD--- 240
Query: 115 LEKVLEGMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILEN------ 168
+EK+L M+LS E+FID CIL G DY S+ G+ PK+A++LIKE ++E ++
Sbjct: 241 VEKLLRLMKLSREQFIDFCILCGTDYNKSVPGMHPKKALQLIKECLNLEGVISTHKLEQY 300
Query: 169 IDTKKY 174
ID K Y
Sbjct: 301 IDKKTY 306
Score = 45.4 bits (106), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 23/52 (44%), Positives = 32/52 (61%), Gaps = 6/52 (11%)
Query: 232 FIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILEN------IDTKKY 277
FID CIL G DY S+ G+ PK+A++LIKE ++E ++ ID K Y
Sbjct: 255 FIDFCILCGTDYNKSVPGMHPKKALQLIKECLNLEGVISTHKLEQYIDKKTY 306
Score = 39.3 bits (90), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 16/35 (45%), Positives = 25/35 (71%)
Query: 201 EFIDLCILLGCDYCDSIRGIGPKRAIELLYSFIDL 235
+FID CIL G DY S+ G+ PK+A++L+ ++L
Sbjct: 254 QFIDFCILCGTDYNKSVPGMHPKKALQLIKECLNL 288
>gi|134287236|ref|YP_001110932.1| nuclease-VHS inhibit celluar gene expression [Heliothis virescens
ascovirus 3e]
gi|133722144|gb|ABO37266.1| nuclease-VHS inhibit celluar gene expression [Heliothis virescens
ascovirus 3e]
Length = 330
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 47/135 (34%), Positives = 71/135 (52%), Gaps = 6/135 (4%)
Query: 56 EEKRKAPCEAEAQCAAMVKAGKVYATATEDMDALTF-GSNILLRHMTFSEARKLPVQEFH 114
E P EAE CAA++ V A + D D L + G + +L ++ V
Sbjct: 184 ESVVNGPSEAETTCAALMYTRMVDAVYSRDYDMLAYTGVDRVLYSISLPRCTYTCVD--- 240
Query: 115 LEKVLEGMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKY 174
+EK+L M+LS E+FID CIL G DY S+ G+ PK+A++LIKE ++E ++ ++Y
Sbjct: 241 VEKLLRLMKLSREQFIDFCILCGTDYNKSVPGMHPKKALQLIKECLNLEGVISTHKLEQY 300
Query: 175 TVPEGWLYKEARELF 189
+ Y R LF
Sbjct: 301 I--DKKTYDWIRNLF 313
Score = 45.4 bits (106), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 24/61 (39%), Positives = 36/61 (59%), Gaps = 2/61 (3%)
Query: 232 FIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGWLYKEAREL 291
FID CIL G DY S+ G+ PK+A++LIKE ++E ++ ++Y + Y R L
Sbjct: 255 FIDFCILCGTDYNKSVPGMHPKKALQLIKECLNLEGVISTHKLEQYI--DKKTYDWIRNL 312
Query: 292 F 292
F
Sbjct: 313 F 313
Score = 39.3 bits (90), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 16/35 (45%), Positives = 25/35 (71%)
Query: 201 EFIDLCILLGCDYCDSIRGIGPKRAIELLYSFIDL 235
+FID CIL G DY S+ G+ PK+A++L+ ++L
Sbjct: 254 QFIDFCILCGTDYNKSVPGMHPKKALQLIKECLNL 288
>gi|320167228|gb|EFW44127.1| DNA-repair protein rad13 [Capsaspora owczarzaki ATCC 30864]
Length = 1235
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 41/106 (38%), Positives = 58/106 (54%), Gaps = 5/106 (4%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVLE 120
AP EAEAQCAA+ AG T TED D FG+ + R+ F K EF+ +E
Sbjct: 907 APMEAEAQCAALDLAGITDGTITEDSDVFLFGARRVYRN--FFNPNKY--AEFYASSAIE 962
Query: 121 G-MELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKI 165
+ L E+ IDL +LLG DY + IGP A+E++ + S+++
Sbjct: 963 SYLALDREKLIDLALLLGSDYTSGVERIGPVLAMEILGDFPSLQEF 1008
Score = 55.5 bits (132), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 33/91 (36%), Positives = 54/91 (59%), Gaps = 7/91 (7%)
Query: 317 SRKICIDASMSLYQFLIAVR-SEGNQLMSVDGEPTSHLMGTFYRTIRLVEHGLKPIYVFD 375
S + ID S+ L Q + A+R +EGN + + +HL+G F R +L+ +G+KP++V+D
Sbjct: 75 SHVLAIDVSIWLNQHMKAMRDAEGNVIRN------AHLIGLFRRLCKLLYYGIKPLFVYD 128
Query: 376 GKPPTLKSGELNKRMEKREDAQKALAKAQEQ 406
G P LK L R +++ AQ +L K E+
Sbjct: 129 GGVPALKRRTLAGRRHQKDLAQDSLKKTAER 159
>gi|5020|emb|CAA47291.1| excision repair protein [Schizosaccharomyces pombe]
Length = 1113
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 37/80 (46%), Positives = 53/80 (66%), Gaps = 7/80 (8%)
Query: 317 SRKICIDASMSLYQFLIAVRS-EGNQLMSVDGEPTSHLMGTFYRTIRLVEHGLKPIYVFD 375
++++ IDAS+ +YQFL AVR EGNQL S SH++G F R +L+ G+KP++VFD
Sbjct: 24 NKRLAIDASIWIYQFLKAVRDKEGNQLKS------SHVVGFFRRICKLLFFGIKPVFVFD 77
Query: 376 GKPPTLKSGELNKRMEKRED 395
G P+LK + KR +R D
Sbjct: 78 GGAPSLKRQTIQKRQARRLD 97
Score = 52.4 bits (124), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 30/98 (30%), Positives = 53/98 (54%), Gaps = 3/98 (3%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVLE 120
AP EAEAQC+ +++ V T+D D FG + R+M F++ + V+ + ++ +
Sbjct: 775 APQEAEAQCSKLLELKLVDGIVTDDSDVFLFGGTRVYRNM-FNQNKF--VELYLMDDMKR 831
Query: 121 GMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKE 158
++ + I L LLG DY + +GP A+E++ E
Sbjct: 832 EFNVNQMDLIKLAHLLGSDYTMGLSRVGPVLALEILHE 869
>gi|19112887|ref|NP_596095.1| DNA repair nuclease Rad13 [Schizosaccharomyces pombe 972h-]
gi|13432230|sp|P28706.2|RAD13_SCHPO RecName: Full=DNA repair protein rad13
gi|3130034|emb|CAA19011.1| DNA repair nuclease Rad13 [Schizosaccharomyces pombe]
Length = 1112
Score = 70.1 bits (170), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 37/80 (46%), Positives = 53/80 (66%), Gaps = 7/80 (8%)
Query: 317 SRKICIDASMSLYQFLIAVRS-EGNQLMSVDGEPTSHLMGTFYRTIRLVEHGLKPIYVFD 375
++++ IDAS+ +YQFL AVR EGNQL S SH++G F R +L+ G+KP++VFD
Sbjct: 24 NKRLAIDASIWIYQFLKAVRDKEGNQLKS------SHVVGFFRRICKLLFFGIKPVFVFD 77
Query: 376 GKPPTLKSGELNKRMEKRED 395
G P+LK + KR +R D
Sbjct: 78 GGAPSLKRQTIQKRQARRLD 97
Score = 52.4 bits (124), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 30/98 (30%), Positives = 53/98 (54%), Gaps = 3/98 (3%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVLE 120
AP EAEAQC+ +++ V T+D D FG + R+M F++ + V+ + ++ +
Sbjct: 774 APQEAEAQCSKLLELKLVDGIVTDDSDVFLFGGTRVYRNM-FNQNKF--VELYLMDDMKR 830
Query: 121 GMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKE 158
++ + I L LLG DY + +GP A+E++ E
Sbjct: 831 EFNVNQMDLIKLAHLLGSDYTMGLSRVGPVLALEILHE 868
>gi|366994113|ref|XP_003676821.1| hypothetical protein NCAS_0E03950 [Naumovozyma castellii CBS 4309]
gi|342302688|emb|CCC70465.1| hypothetical protein NCAS_0E03950 [Naumovozyma castellii CBS 4309]
Length = 1000
Score = 70.1 bits (170), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 37/98 (37%), Positives = 57/98 (58%), Gaps = 3/98 (3%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVLE 120
AP EAEAQCA +++ V T+D D FG + + ++M F E K V+ + E +L
Sbjct: 758 APMEAEAQCAELLQLKLVDGVVTDDSDVFLFGGSKIYKNM-FHE--KNYVEFYDSESILR 814
Query: 121 GMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKE 158
+ L E I+L LLG DY + I+G+GP ++E++ E
Sbjct: 815 NLGLDRENMIELAELLGSDYTNGIKGMGPVSSLEVLAE 852
Score = 63.5 bits (153), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 34/89 (38%), Positives = 56/89 (62%), Gaps = 11/89 (12%)
Query: 316 ESRKICIDASMSLYQFLIAVRS-EGNQLMSVDGEPTSHLMGTFYRTIRLVEHGLKPIYVF 374
+ +K+ +DAS+ +YQF+ AVR +GN++ + SH+ G F R +L+ G++P++VF
Sbjct: 23 QDKKMAVDASIWIYQFMKAVRDQDGNRVSN------SHITGFFRRICKLLYFGIQPVFVF 76
Query: 375 DGKPPTLKSGELNKRME----KREDAQKA 399
DG P LK + +R E KR++AQK
Sbjct: 77 DGGVPALKRDTIKQRREIRQGKRDNAQKT 105
>gi|294909525|ref|XP_002777787.1| hypothetical protein Pmar_PMAR008722 [Perkinsus marinus ATCC 50983]
gi|239885749|gb|EER09582.1| hypothetical protein Pmar_PMAR008722 [Perkinsus marinus ATCC 50983]
Length = 937
Score = 70.1 bits (170), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 34/97 (35%), Positives = 57/97 (58%), Gaps = 4/97 (4%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVLE 120
APCEAEAQC A+V+ G ++D D L +G+ ++LR + F + V+ + ++ +
Sbjct: 778 APCEAEAQCVALVRNGLADGVISDDSDTLMYGAEVVLRRLYFD---AMYVEMYSSSRMPD 834
Query: 121 GMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIK 157
+ H+ + L +LLGCDY + GIG A+E+I+
Sbjct: 835 RLR-DHDAMVSLAMLLGCDYTPGVLGIGAVNALEIIQ 870
Score = 40.0 bits (92), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 30/55 (54%)
Query: 352 HLMGTFYRTIRLVEHGLKPIYVFDGKPPTLKSGELNKRMEKREDAQKALAKAQEQ 406
H++G F R +L+ +KPI VFDG P LK + KR E A+ L + +Q
Sbjct: 9 HMLGFFRRLCKLLFLKVKPIIVFDGPAPKLKRDTIAKRARDAEKAEARLRRTAQQ 63
>gi|385304582|gb|EIF48594.1| single-stranded dna cleaves single-stranded dna during nucleotide
excision repair [Dekkera bruxellensis AWRI1499]
Length = 577
Score = 70.1 bits (170), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 37/98 (37%), Positives = 58/98 (59%), Gaps = 3/98 (3%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVLE 120
AP EAEAQCA + V T+D D FG +I+ ++M F+E K V+ + LE +
Sbjct: 384 APMEAEAQCAELFGLKLVDGIVTDDSDCFLFGGSIIYKNM-FNE--KNFVECYQLEDIAR 440
Query: 121 GMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKE 158
M L+ ++ IDL ++LG DY ++G+G A+E++ E
Sbjct: 441 DMGLTRKQMIDLALMLGSDYTSGLKGVGKVTAVEILSE 478
>gi|359491497|ref|XP_002278082.2| PREDICTED: exonuclease 1-like [Vitis vinifera]
Length = 541
Score = 70.1 bits (170), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 51/187 (27%), Positives = 89/187 (47%), Gaps = 21/187 (11%)
Query: 30 NGAKKLLKARSSTTQGRLDSFFTIRREEKRK---APCEAEAQCAAM----VKAGKVYATA 82
GA +L + + T I R E + AP EA+AQ A + G + A
Sbjct: 116 TGASELFQRAVTITPSMAHQLIQILRTENIEFVVAPYEADAQLAYLSNLEADKGGIAAVI 175
Query: 83 TEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVLEGM-------ELSHEEFIDLCIL 135
TED D + +G R + F R +E L++V + + E F +C+L
Sbjct: 176 TEDSDLMAYGC----RAIIFKMDRYGNGEEMVLDRVFDSVARAPSFQNFDKELFTGMCVL 231
Query: 136 LGCDYCDSIRGIGPKRAIELIKEHRSIEKILENID-TKKYTVPEGWL--YKEARELFRHP 192
GCD+ S+ GIG RA ++ ++R+++++L + K+ +PE + ++EA +F+H
Sbjct: 232 AGCDFLPSVPGIGIARAYSMVAKYRNLDRVLSVLKFEKRNQMPEDYTKSFREAVAVFQHA 291
Query: 193 EVADPET 199
+ D +T
Sbjct: 292 RIYDADT 298
Score = 52.8 bits (125), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 46/74 (62%), Gaps = 3/74 (4%)
Query: 232 FIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENID-TKKYTVPEGWL--YKEA 288
F +C+L GCD+ S+ GIG RA ++ ++R+++++L + K+ +PE + ++EA
Sbjct: 225 FTGMCVLAGCDFLPSVPGIGIARAYSMVAKYRNLDRVLSVLKFEKRNQMPEDYTKSFREA 284
Query: 289 RELFRHPEIADPET 302
+F+H I D +T
Sbjct: 285 VAVFQHARIYDADT 298
>gi|302676249|ref|XP_003027808.1| hypothetical protein SCHCODRAFT_60951 [Schizophyllum commune H4-8]
gi|300101495|gb|EFI92905.1| hypothetical protein SCHCODRAFT_60951 [Schizophyllum commune H4-8]
Length = 548
Score = 70.1 bits (170), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 47/144 (32%), Positives = 77/144 (53%), Gaps = 13/144 (9%)
Query: 64 EAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARK--LPVQEFHLEKVLEG 121
EAEA +AMV G +ED D L +G+ LLR+++ + LP + L
Sbjct: 368 EAEALASAMVLGGLADYVVSEDTDVLVYGAP-LLRNLSNRQGPLVLLPASLWDL------ 420
Query: 122 MELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVP-EGW 180
+ LS +E++D +LLG D+ I+ +GP RA++ I+ H SIE+I++ +P E +
Sbjct: 421 LHLSRKEYVDFALLLGTDFSQRIKNVGPARALKFIRTHGSIERIVDEETKYPPRIPVEEY 480
Query: 181 LYK--EARELFRH-PEVADPETIE 201
L+ AR +F P + PE ++
Sbjct: 481 LHSVAVARAIFATLPALPAPEALQ 504
Score = 48.1 bits (113), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 44/77 (57%), Gaps = 4/77 (5%)
Query: 232 FIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVP-EGWLYK--EA 288
++D +LLG D+ I+ +GP RA++ I+ H SIE+I++ +P E +L+ A
Sbjct: 428 YVDFALLLGTDFSQRIKNVGPARALKFIRTHGSIERIVDEETKYPPRIPVEEYLHSVAVA 487
Query: 289 RELFRH-PEIADPETIE 304
R +F P + PE ++
Sbjct: 488 RAIFATLPALPAPEALQ 504
>gi|350589314|ref|XP_003130603.3| PREDICTED: exonuclease 1 [Sus scrofa]
Length = 836
Score = 69.7 bits (169), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 55/154 (35%), Positives = 80/154 (51%), Gaps = 11/154 (7%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFG-SNILLRHMTFSEARKLPVQEFHLEKVL 119
AP EA+AQ A + KAG V A TED D L FG ++L+ F L V + L K
Sbjct: 147 APYEADAQLAYLNKAGIVQAIITEDSDLLAFGCKKVILKMDQFGNG--LEVDQARLGKCK 204
Query: 120 E-GMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIK--EHRSIEKILENID---TKK 173
+ G + E+F +CIL GCDY S+RGIG +A ++++ + I K+++ I
Sbjct: 205 QLGDVFTEEKFRYMCILSGCDYLSSLRGIGLAKACKVLRLANNPDIVKVIKKIGHYLKMN 264
Query: 174 YTVPEGWL--YKEARELFRHPEVADPETIEFIDL 205
TVPE ++ + A F + V DP + I L
Sbjct: 265 ITVPEDYIEGFIRANNTFLYQLVFDPINRKLIPL 298
Score = 41.6 bits (96), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 31/107 (28%), Positives = 57/107 (53%), Gaps = 14/107 (13%)
Query: 235 LCILLGCDYCDSIRGIGPKRAIELIK--EHRSIEKILENID---TKKYTVPEGWL--YKE 287
+CIL GCDY S+RGIG +A ++++ + I K+++ I TVPE ++ +
Sbjct: 218 MCILSGCDYLSSLRGIGLAKACKVLRLANNPDIVKVIKKIGHYLKMNITVPEDYIEGFIR 277
Query: 288 ARELFRHPEIADPETIELVA------DVAPSSIRESRKICIDASMSL 328
A F + + DP +L+ D+ P+++ + + ID S++L
Sbjct: 278 ANNTFLYQLVFDPINRKLIPLNAYEDDIDPATLSYAGRY-IDDSVAL 323
>gi|426239609|ref|XP_004013712.1| PREDICTED: exonuclease 1 [Ovis aries]
Length = 835
Score = 69.7 bits (169), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 54/153 (35%), Positives = 78/153 (50%), Gaps = 9/153 (5%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFG-SNILLRHMTFSEARKLPVQEFHLEKVL 119
AP EA+AQ A + KAG V A TED D L FG ++L+ F ++ + K L
Sbjct: 147 APYEADAQLAYLNKAGIVQAVITEDSDLLAFGCKKVILKMDQFGNGLEVDQARLGMCKQL 206
Query: 120 EGMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIK--EHRSIEKILENID---TKKY 174
G + E+F +CIL GCDY S+RGIG +A +L++ + I K++ I
Sbjct: 207 -GDVFTEEKFRYMCILSGCDYLSSLRGIGLAKACKLLRLANNPDILKVIRKIGHYLKMNI 265
Query: 175 TVPEGWL--YKEARELFRHPEVADPETIEFIDL 205
TVPE ++ + A F + V DP + I L
Sbjct: 266 TVPEDYIKGFIRANNTFLYQLVFDPIERKLIPL 298
>gi|430814069|emb|CCJ28648.1| unnamed protein product [Pneumocystis jirovecii]
Length = 458
Score = 69.7 bits (169), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 45/146 (30%), Positives = 75/146 (51%), Gaps = 19/146 (13%)
Query: 64 EAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTF-------SEARKLPVQEFHLE 116
EAEA +++V +G TED D L + +L M+ SE P F ++
Sbjct: 268 EAEAVASSLVNSGIADFVVTEDTDVLVLNAKMLRGFMSMRGLANKNSENSFFPPNMFMID 327
Query: 117 KV---LEGMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDT-- 171
+ L +S + FID IL G D+C++I G+G A LI+++++IE +LEN+
Sbjct: 328 PIDVRLNLDNISLDSFIDFAILCGTDFCNTIHGLGCYGAFFLIQKYQNIELVLENLSEFK 387
Query: 172 -----KKYTVPEGWL--YKEARELFR 190
+KY PE ++ + AR++F+
Sbjct: 388 TKSGRQKYIAPENYIQEVQVARKVFK 413
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 35/101 (34%), Positives = 56/101 (55%), Gaps = 14/101 (13%)
Query: 229 LYSFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDT-------KKYTVPE 281
L SFID IL G D+C++I G+G A LI+++++IE +LEN+ +KY PE
Sbjct: 340 LDSFIDFAILCGTDFCNTIHGLGCYGAFFLIQKYQNIELVLENLSEFKTKSGRQKYIAPE 399
Query: 282 GWL--YKEARELFR---HPEIADPETIELVADVAPSSIRES 317
++ + AR++F+ H D + V DV +I E+
Sbjct: 400 NYIQEVQVARKVFKCIPHTRFYDSKLT--VPDVPWFNITEN 438
>gi|429964483|gb|ELA46481.1| hypothetical protein VCUG_02025 [Vavraia culicis 'floridensis']
Length = 414
Score = 69.7 bits (169), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 41/140 (29%), Positives = 78/140 (55%), Gaps = 10/140 (7%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFG-SNILLRHMTFSEARKLPVQEFHLEKVL 119
+P E++AQ + + + +++ TED D + + +NIL ++ V +
Sbjct: 147 SPYESDAQLSYLQRINYIHSIMTEDSDLIVYNCNNILYKYANNH------VMHYERSVFR 200
Query: 120 EGMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEG 179
E + + +D+CIL GCDY ++++G+G AI+L+K+ RS+E ++ + K +VPE
Sbjct: 201 EKNDFLCDNLLDVCILSGCDYLENVKGVGINSAIKLMKKLRSVELVVNEMRRTK-SVPES 259
Query: 180 WL--YKEARELFRHPEVADP 197
+L + +AR F++ V DP
Sbjct: 260 YLSNFIKARLTFKYQVVYDP 279
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 49/72 (68%), Gaps = 3/72 (4%)
Query: 231 SFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGWL--YKEA 288
+ +D+CIL GCDY ++++G+G AI+L+K+ RS+E ++ + K +VPE +L + +A
Sbjct: 209 NLLDVCILSGCDYLENVKGVGINSAIKLMKKLRSVELVVNEMRRTK-SVPESYLSNFIKA 267
Query: 289 RELFRHPEIADP 300
R F++ + DP
Sbjct: 268 RLTFKYQVVYDP 279
>gi|281212257|gb|EFA86417.1| xeroderma pigmentosum group G family protein [Polysphondylium
pallidum PN500]
Length = 1515
Score = 69.7 bits (169), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 36/107 (33%), Positives = 62/107 (57%), Gaps = 9/107 (8%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFGSN---ILLRHMTFSEARKLPVQEFHLEK 117
+P EAEAQCA + G + TED D L FG + ++ RH+ F + K + +
Sbjct: 1020 SPTEAEAQCAELFALGLIDGVVTEDSDTLLFGKSSDMVVYRHL-FQQPEK-----YCMSD 1073
Query: 118 VLEGMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEK 164
+ + + ++ ++ I+L +LLGCDY ++GIG A+E+I E ++E+
Sbjct: 1074 IEKTIGVNRDDLINLAMLLGCDYTAGVKGIGIVNAMEIISEFDTLEE 1120
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 33/91 (36%), Positives = 55/91 (60%), Gaps = 9/91 (9%)
Query: 316 ESRKICIDASMSLYQFLIAVRSEGNQLMSVDGEP--TSHLMGTFYRTIRLVEHGLKPIYV 373
E + + IDAS+ ++ F+ A + G+P +HL+G F+R +L++H +KPI+V
Sbjct: 63 EGQTLAIDASIWIHSFIRAFKDSR-------GDPAENAHLLGFFWRICKLLQHRIKPIFV 115
Query: 374 FDGKPPTLKSGELNKRMEKREDAQKALAKAQ 404
FDG P LK +N+R ++RE++ L K Q
Sbjct: 116 FDGNIPYLKQRTINERRKRRENSLAQLEKNQ 146
>gi|440803854|gb|ELR24737.1| XPG Iregion domain containing protein [Acanthamoeba castellanii
str. Neff]
Length = 832
Score = 69.7 bits (169), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 41/140 (29%), Positives = 73/140 (52%), Gaps = 4/140 (2%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFG-SNILLRHMTFSEARKLPVQEFHLEKVL 119
AP EA+AQ A + G V++ +ED D L FG +L + +++ + + L
Sbjct: 116 APYEADAQLAFLSHTGYVHSVISEDSDLLPFGCKRVLFKMDGDGNGKEIQLSDLGQNTPL 175
Query: 120 EGMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENI-DTKKYTVPE 178
+H+ F +CIL GCDY SI G+G K+A L+ ++R+++++ + + + + VP
Sbjct: 176 RFHNFTHDMFRQMCILSGCDYLASITGLGVKKAHGLLNKYRTMDRVFRFLKNDRSFIVPP 235
Query: 179 GW--LYKEARELFRHPEVAD 196
+ ++ A F H V D
Sbjct: 236 EYEEAFERAERTFLHQSVYD 255
Score = 44.3 bits (103), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 41/71 (57%), Gaps = 3/71 (4%)
Query: 232 FIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENI-DTKKYTVPEGW--LYKEA 288
F +CIL GCDY SI G+G K+A L+ ++R+++++ + + + + VP + ++ A
Sbjct: 185 FRQMCILSGCDYLASITGLGVKKAHGLLNKYRTMDRVFRFLKNDRSFIVPPEYEEAFERA 244
Query: 289 RELFRHPEIAD 299
F H + D
Sbjct: 245 ERTFLHQSVYD 255
>gi|164657682|ref|XP_001729967.1| hypothetical protein MGL_2953 [Malassezia globosa CBS 7966]
gi|159103861|gb|EDP42753.1| hypothetical protein MGL_2953 [Malassezia globosa CBS 7966]
Length = 572
Score = 69.7 bits (169), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 62/209 (29%), Positives = 92/209 (44%), Gaps = 7/209 (3%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFG-SNILLRHMTFSEARKLPVQEFHLEKVL 119
AP EA+AQ A + + G + A TED D L FG +L + T+ ++ F K L
Sbjct: 66 APYEADAQLAYLEQEGLIDAIITEDSDLLVFGCKTVLFKLDTYGHCVEIQRDRFVHAKQL 125
Query: 120 EGMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTK-KYTVPE 178
S ++F + IL GCDY SI G+G K A + ++++ SIE++L + + K VP
Sbjct: 126 AFDGWSLDDFRRMAILSGCDYLPSITGMGLKNAHKFLRKYESIERVLRVLQLEGKMHVPP 185
Query: 179 GWLYKEARE--LFRHPEVADPETIEFIDLCILLGCDYCDSIR---GIGPKRAIELLYSFI 233
+ AR F H V DP + L CD + + GI P +
Sbjct: 186 AYAADFARAEFTFAHQRVWDPRGPGSLTTLAPLPCDINEDLLACIGIPPSLEEARAIAHG 245
Query: 234 DLCILLGCDYCDSIRGIGPKRAIELIKEH 262
DLC + GI A ++ H
Sbjct: 246 DLCPITRQPLSRPALGIALAPAQSVLSSH 274
Score = 46.2 bits (108), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 35/105 (33%), Positives = 50/105 (47%), Gaps = 5/105 (4%)
Query: 229 LYSFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTK-KYTVPEGWLYKE 287
L F + IL GCDY SI G+G K A + ++++ SIE++L + + K VP +
Sbjct: 132 LDDFRRMAILSGCDYLPSITGMGLKNAHKFLRKYESIERVLRVLQLEGKMHVPPAYAADF 191
Query: 288 ARE--LFRHPEIADPETIELVADVAPSS--IRESRKICIDASMSL 328
AR F H + DP + +AP I E CI SL
Sbjct: 192 ARAEFTFAHQRVWDPRGPGSLTTLAPLPCDINEDLLACIGIPPSL 236
>gi|392564416|gb|EIW57594.1| PIN domain-like protein [Trametes versicolor FP-101664 SS1]
Length = 1244
Score = 69.7 bits (169), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 38/98 (38%), Positives = 58/98 (59%), Gaps = 3/98 (3%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVLE 120
AP EAEAQCAA++ G V T+D D FG +L++M F++++ V+ F L +
Sbjct: 856 APMEAEAQCAALLSFGLVDGIITDDSDVFLFGGGRVLKNM-FNQSKT--VECFLLSDLER 912
Query: 121 GMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKE 158
+ L ++ + L LLG DY D + G+GP A+EL+ E
Sbjct: 913 ELGLDRDKLVRLAYLLGSDYTDGLPGVGPVVAMELLSE 950
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 53/92 (57%), Gaps = 7/92 (7%)
Query: 316 ESRKICIDASMSLYQFLIAVRS-EGNQLMSVDGEPTSHLMGTFYRTIRLVEHGLKPIYVF 374
E + + ID+S+ +YQF +R EG L++ +H++G R +L+ +G+KP++VF
Sbjct: 23 EGKSMAIDSSIWIYQFQATMRDKEGRGLVN------AHVLGFLRRICKLLFYGIKPVFVF 76
Query: 375 DGKPPTLKSGELNKRMEKREDAQKALAKAQEQ 406
DG P LK + +R K+ A + AK E+
Sbjct: 77 DGGAPALKMSTIAERKNKKSGAAASHAKIAER 108
>gi|50287803|ref|XP_446331.1| hypothetical protein [Candida glabrata CBS 138]
gi|49525638|emb|CAG59255.1| unnamed protein product [Candida glabrata]
Length = 992
Score = 69.7 bits (169), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 38/98 (38%), Positives = 56/98 (57%), Gaps = 3/98 (3%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVLE 120
AP EAEAQCA +V V T+D D FG + ++M F E K V+ + E + +
Sbjct: 750 APMEAEAQCAELVNLKLVDGIITDDSDVFLFGGKKVYKNM-FQE--KNYVEYYDSEDIYQ 806
Query: 121 GMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKE 158
G+ L+ E I+L LLG DY I+G+GP ++E++ E
Sbjct: 807 GLGLTRETMIELAQLLGSDYTTGIKGMGPVSSMEILAE 844
Score = 68.9 bits (167), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 40/94 (42%), Positives = 56/94 (59%), Gaps = 15/94 (15%)
Query: 318 RKICIDASMSLYQFLIAVRS-EGNQLMSVDGEPTSHLMGTFYRTIRLVEHGLKPIYVFDG 376
R++ +DAS+ +YQFL AVR EGN + S +H+ G F R +L+ G+KP++VFDG
Sbjct: 25 RRMAVDASIWIYQFLKAVRDKEGNAIKS------AHITGFFRRVCKLLYFGIKPVFVFDG 78
Query: 377 KPPTLKSGELNKRMEKRE--------DAQKALAK 402
P LK + KR E+RE A+K LAK
Sbjct: 79 GVPVLKRKTIQKRKERREGKRDNATNTAKKILAK 112
>gi|403411526|emb|CCL98226.1| predicted protein [Fibroporia radiculosa]
Length = 743
Score = 69.7 bits (169), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 49/148 (33%), Positives = 78/148 (52%), Gaps = 12/148 (8%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVLE 120
AP EA+AQ A + + G V TED D L FG +L + + A + V V
Sbjct: 88 APYEADAQLAYLERIGIVDGIITEDSDLLVFGCKKVLFKLDPTSATIICVSRADFASVTS 147
Query: 121 G-------MELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILE--NIDT 171
G + S +F + IL GCDY SI+GIG K A L+++++++E ++ N++
Sbjct: 148 GSSGGISLLGWSDVQFRSMAILSGCDYLPSIQGIGLKTAHSLLRKYKTVENVIRALNLEG 207
Query: 172 KKYTVPEGWL--YKEARELFRHPEVADP 197
KK VP +L +++A ++F + V DP
Sbjct: 208 KK-KVPSNYLQAFRKAEKVFLYQRVYDP 234
Score = 48.9 bits (115), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 49/79 (62%), Gaps = 5/79 (6%)
Query: 232 FIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILE--NIDTKKYTVPEGWL--YKE 287
F + IL GCDY SI+GIG K A L+++++++E ++ N++ KK VP +L +++
Sbjct: 163 FRSMAILSGCDYLPSIQGIGLKTAHSLLRKYKTVENVIRALNLEGKK-KVPSNYLQAFRK 221
Query: 288 ARELFRHPEIADPETIELV 306
A ++F + + DP LV
Sbjct: 222 AEKVFLYQRVYDPTQEMLV 240
>gi|329666203|pdb|3QEA|Z Chain Z, Crystal Structure Of Human Exonuclease 1 Exo1 (Wt) In
Complex With Dna (Complex Ii)
gi|329666206|pdb|3QEB|Z Chain Z, Crystal Structure Of Human Exonuclease 1 Exo1 (Wt) In
Complex With Dna And Mn2+ (Complex Iii)
Length = 352
Score = 69.7 bits (169), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 52/153 (33%), Positives = 79/153 (51%), Gaps = 9/153 (5%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFG-SNILLRHMTFSEARKLPVQEFHLEKVL 119
AP EA+AQ A + KAG V A TED D L FG ++L+ F ++ + + L
Sbjct: 147 APYEADAQLAYLNKAGIVQAIITEDSDLLAFGCKKVILKMDQFGNGLEIDQARLGMCRQL 206
Query: 120 EGMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIK--EHRSIEKILENID---TKKY 174
G + E+F +CIL GCDY S+RGIG +A ++++ + I K+++ I
Sbjct: 207 -GDVFTEEKFRYMCILSGCDYLSSLRGIGLAKACKVLRLANNPDIVKVIKKIGHYLKMNI 265
Query: 175 TVPEGWL--YKEARELFRHPEVADPETIEFIDL 205
TVPE ++ + A F + V DP + I L
Sbjct: 266 TVPEDYINGFIRANNTFLYQLVFDPIKRKLIPL 298
Score = 42.0 bits (97), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 31/107 (28%), Positives = 56/107 (52%), Gaps = 14/107 (13%)
Query: 235 LCILLGCDYCDSIRGIGPKRAIELIK--EHRSIEKILENID---TKKYTVPEGWL--YKE 287
+CIL GCDY S+RGIG +A ++++ + I K+++ I TVPE ++ +
Sbjct: 218 MCILSGCDYLSSLRGIGLAKACKVLRLANNPDIVKVIKKIGHYLKMNITVPEDYINGFIR 277
Query: 288 ARELFRHPEIADPETIELVA------DVAPSSIRESRKICIDASMSL 328
A F + + DP +L+ DV P ++ + + +D S++L
Sbjct: 278 ANNTFLYQLVFDPIKRKLIPLNAYEDDVDPETLSYAGQY-VDDSIAL 323
>gi|297844758|ref|XP_002890260.1| hypothetical protein ARALYDRAFT_889222 [Arabidopsis lyrata subsp.
lyrata]
gi|297336102|gb|EFH66519.1| hypothetical protein ARALYDRAFT_889222 [Arabidopsis lyrata subsp.
lyrata]
Length = 577
Score = 69.7 bits (169), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 84/351 (23%), Positives = 142/351 (40%), Gaps = 76/351 (21%)
Query: 61 APCEAEAQCAAM----VKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLE 116
AP EA+AQ A + ++ G + A TED D L +G ++ F R +E L+
Sbjct: 150 APYEADAQLAYLSSLELEHGGIAAVITEDSDLLAYGCKAVI----FKMDRYGKGEELILD 205
Query: 117 KVLEGME-------LSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENI 169
V + ++ E F +C+L GCD+ S+ G+G RA I +++S+E++L +
Sbjct: 206 NVFQAVDQKPSFQNFDQELFTAMCVLAGCDFLPSVPGVGISRAHAFISKYQSVERVLSFL 265
Query: 170 DTKK-YTVPEGW--LYKEARELFRHPEVAD----------PETIEFIDLCI----LLGCD 212
TKK VP+ + + EA +F+H + D P + ++L + LG D
Sbjct: 266 KTKKGKLVPDDYSSSFTEAVSVFQHARIYDFDAKKLKHLKPLSQNLLNLPVGQLEFLGPD 325
Query: 213 YCDSIRGIGPKRAIELLYSFIDLCILLGCDYCDSIRGIGPKR----AIELIKEHR----- 263
+ P A + ID + + R P+R + KE
Sbjct: 326 -------LSPSVAAAVAEGNIDPITMEAFN-----RFSVPRRQLQKPVRSFKEQEKESSF 373
Query: 264 ---SIEKILENIDTKKYTVPEGWLYKEA--------------RELFRHPE----IADPET 302
S K E I+ K+ T E +Y EA +L P + P
Sbjct: 374 LVCSSSKSEERIELKR-TADEATIYPEATLKKAMYSKQDSDLHKLLSQPNRDQVVIQPSN 432
Query: 303 IELVADVAPSSIRESRKICID-ASMSLYQFLIAVRSEGNQLMSVDGEPTSH 352
L+ D P IR++ +I ++ A L + ++ ++ + P SH
Sbjct: 433 PSLIPDNNPFKIRKTDEINLEFAEYGLQELAVSFVTKSKAMDVASSSPNSH 483
>gi|119908266|ref|XP_582828.3| PREDICTED: exonuclease 1 [Bos taurus]
Length = 835
Score = 69.7 bits (169), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 54/153 (35%), Positives = 78/153 (50%), Gaps = 9/153 (5%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFG-SNILLRHMTFSEARKLPVQEFHLEKVL 119
AP EA+AQ A + KAG V A TED D L FG ++L+ F ++ + K L
Sbjct: 147 APYEADAQLAYLNKAGIVQAVITEDSDLLAFGCKKVILKMDQFGNGLEVDQARLGMCKQL 206
Query: 120 EGMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIK--EHRSIEKILENID---TKKY 174
G + E+F +CIL GCDY S+RGIG +A +L++ + I K++ I
Sbjct: 207 -GDVFTEEKFRYMCILSGCDYLSSLRGIGLAKACKLLRLANNPDILKVVRKIGHYLKMNI 265
Query: 175 TVPEGWL--YKEARELFRHPEVADPETIEFIDL 205
TVPE ++ + A F + V DP + I L
Sbjct: 266 TVPEDYIKGFIRANNTFLYQLVFDPIKRKLIPL 298
Score = 40.4 bits (93), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 47/93 (50%), Gaps = 13/93 (13%)
Query: 235 LCILLGCDYCDSIRGIGPKRAIELIK--EHRSIEKILENID---TKKYTVPEGWL--YKE 287
+CIL GCDY S+RGIG +A +L++ + I K++ I TVPE ++ +
Sbjct: 218 MCILSGCDYLSSLRGIGLAKACKLLRLANNPDILKVVRKIGHYLKMNITVPEDYIKGFIR 277
Query: 288 ARELFRHPEIADPETIELVA------DVAPSSI 314
A F + + DP +L+ DV P ++
Sbjct: 278 ANNTFLYQLVFDPIKRKLIPLNAYEDDVDPKTL 310
>gi|296818415|ref|XP_002849544.1| DNA excision repair protein Rad2 [Arthroderma otae CBS 113480]
gi|238839997|gb|EEQ29659.1| DNA excision repair protein Rad2 [Arthroderma otae CBS 113480]
Length = 1066
Score = 69.7 bits (169), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 60/205 (29%), Positives = 92/205 (44%), Gaps = 43/205 (20%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVLE 120
AP EAEAQCA +V G V T+D D FG + ++M F++++ + E +L LE
Sbjct: 715 APMEAEAQCAELVSLGLVDGIVTDDSDTFLFGGTRIYKNM-FNQSKYV---ECYLSSDLE 770
Query: 121 G-MELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIE-------------KIL 166
L ++ I LLG DY + I GIGP A+E++ E S+E KI
Sbjct: 771 KEYTLDRKKLISFSHLLGSDYTEGIPGIGPVTALEILTEFSSLEEFRDWWSQVQLGNKIP 830
Query: 167 ENI----------DTKKYTVPEGWLYKEARELFRHPEV-ADPETIEFIDLCILLGCDYCD 215
++ + K +P G+ K + + PEV +DP ++ G D
Sbjct: 831 DDTHAAFRKKFKKNLTKLFLPPGFPDKAVEKAYLEPEVDSDPSEFKW-------GVPDLD 883
Query: 216 SIR-------GIGPKRAIELLYSFI 233
++R G P+R E+L I
Sbjct: 884 AVRQFLMATIGWSPERTDEVLVPVI 908
Score = 61.6 bits (148), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 31/66 (46%), Positives = 44/66 (66%), Gaps = 7/66 (10%)
Query: 318 RKICIDASMSLYQFLIAVRS-EGNQLMSVDGEPTSHLMGTFYRTIRLVEHGLKPIYVFDG 376
R++ IDAS+ +YQFL AVR EGN L + +H++G F R +L+ G+KP++VFDG
Sbjct: 25 RRLAIDASIWIYQFLKAVRDKEGNALRN------AHIVGFFRRICKLLFFGIKPVFVFDG 78
Query: 377 KPPTLK 382
P LK
Sbjct: 79 GAPVLK 84
>gi|409048552|gb|EKM58030.1| hypothetical protein PHACADRAFT_90326 [Phanerochaete carnosa
HHB-10118-sp]
Length = 320
Score = 69.7 bits (169), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 47/147 (31%), Positives = 76/147 (51%), Gaps = 10/147 (6%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPV--QEFHLEKV 118
AP EA+AQ A + + G V TED D L FG +L + E+ + + Q+F
Sbjct: 147 APYEADAQMAYLERIGLVDGILTEDSDLLVFGCKSVLLKLDTVESTVISISRQDFASLTA 206
Query: 119 LEG-----MELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTK- 172
G + S +F + IL GCDY SI +G K A L+++H +E ++ + +
Sbjct: 207 SSGGGISLLGWSDVQFRAMAILSGCDYLPSIPSVGLKTAWSLLRKHGCVENVIRALRIEG 266
Query: 173 KYTVPEGWL--YKEARELFRHPEVADP 197
K ++P+G+L ++ A ++F H V DP
Sbjct: 267 KKSIPQGYLQAFRLAEKVFLHQRVYDP 293
Score = 48.5 bits (114), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 43/72 (59%), Gaps = 3/72 (4%)
Query: 232 FIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTK-KYTVPEGWL--YKEA 288
F + IL GCDY SI +G K A L+++H +E ++ + + K ++P+G+L ++ A
Sbjct: 222 FRAMAILSGCDYLPSIPSVGLKTAWSLLRKHGCVENVIRALRIEGKKSIPQGYLQAFRLA 281
Query: 289 RELFRHPEIADP 300
++F H + DP
Sbjct: 282 EKVFLHQRVYDP 293
>gi|389747667|gb|EIM88845.1| PIN domain-like protein [Stereum hirsutum FP-91666 SS1]
Length = 322
Score = 69.3 bits (168), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 51/153 (33%), Positives = 74/153 (48%), Gaps = 13/153 (8%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVL- 119
AP EA+AQ A + + G V TED D L FG + + A + V
Sbjct: 147 APYEADAQLAYLERQGVVQGIITEDSDLLVFGCQNVHFKLDSVNATITSISRSQFSSVTA 206
Query: 120 -----EGMEL---SHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDT 171
G+ L S EF + IL GCDY S+ G+G K A L+++H EK++ +
Sbjct: 207 TSPFSNGLSLQGWSDVEFRAMAILSGCDYLPSVPGVGLKTAWTLLRKHGKWEKVVRALRL 266
Query: 172 K-KYTVPEGW--LYKEARELFRHPEVADPETIE 201
+ K VP G+ ++K A ++F H V DP T+E
Sbjct: 267 EGKKEVPRGYEAMFKRAEKVFLHQRVYDP-TVE 298
Score = 52.0 bits (123), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 44/78 (56%), Gaps = 3/78 (3%)
Query: 232 FIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTK-KYTVPEGW--LYKEA 288
F + IL GCDY S+ G+G K A L+++H EK++ + + K VP G+ ++K A
Sbjct: 224 FRAMAILSGCDYLPSVPGVGLKTAWTLLRKHGKWEKVVRALRLEGKKEVPRGYEAMFKRA 283
Query: 289 RELFRHPEIADPETIELV 306
++F H + DP LV
Sbjct: 284 EKVFLHQRVYDPTVEALV 301
>gi|297484026|ref|XP_002694001.1| PREDICTED: exonuclease 1 [Bos taurus]
gi|296479294|tpg|DAA21409.1| TPA: exonuclease 1 [Bos taurus]
Length = 835
Score = 69.3 bits (168), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 54/153 (35%), Positives = 78/153 (50%), Gaps = 9/153 (5%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFG-SNILLRHMTFSEARKLPVQEFHLEKVL 119
AP EA+AQ A + KAG V A TED D L FG ++L+ F ++ + K L
Sbjct: 147 APYEADAQLAYLNKAGIVQAVITEDSDLLAFGCKKVILKMDQFGNGLEVDQARLGMCKQL 206
Query: 120 EGMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIK--EHRSIEKILENID---TKKY 174
G + E+F +CIL GCDY S+RGIG +A +L++ + I K++ I
Sbjct: 207 -GDVFTEEKFRYMCILSGCDYLSSLRGIGLAKACKLLRLANNPDILKVVRKIGHYLKMNI 265
Query: 175 TVPEGWL--YKEARELFRHPEVADPETIEFIDL 205
TVPE ++ + A F + V DP + I L
Sbjct: 266 TVPEDYIKGFIRANNTFLYQLVFDPIKRKLIPL 298
Score = 40.4 bits (93), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 47/93 (50%), Gaps = 13/93 (13%)
Query: 235 LCILLGCDYCDSIRGIGPKRAIELIK--EHRSIEKILENID---TKKYTVPEGWL--YKE 287
+CIL GCDY S+RGIG +A +L++ + I K++ I TVPE ++ +
Sbjct: 218 MCILSGCDYLSSLRGIGLAKACKLLRLANNPDILKVVRKIGHYLKMNITVPEDYIKGFIR 277
Query: 288 ARELFRHPEIADPETIELVA------DVAPSSI 314
A F + + DP +L+ DV P ++
Sbjct: 278 ANNTFLYQLVFDPIKRKLIPLNAYEDDVDPKTL 310
>gi|296230855|ref|XP_002760913.1| PREDICTED: exonuclease 1 [Callithrix jacchus]
Length = 852
Score = 69.3 bits (168), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 53/153 (34%), Positives = 79/153 (51%), Gaps = 9/153 (5%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFG-SNILLRHMTFSEARKLPVQEFHLEKVL 119
AP EA+AQ A + KAG V A TED D L FG ++L+ F ++ + + L
Sbjct: 147 APYEADAQLAYLNKAGIVQAIITEDSDLLAFGCKKVILKMDQFGNGLEIDQARLGMCRQL 206
Query: 120 EGMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIK--EHRSIEKILENID---TKKY 174
G + E+F +CIL GCDY S+RGIG +A +++K + I K+++ I
Sbjct: 207 -GDVFTEEKFRYMCILSGCDYLSSLRGIGLAKACKVLKLANNPDIVKVIKKIGHYLKMNI 265
Query: 175 TVPEGWL--YKEARELFRHPEVADPETIEFIDL 205
TVPE ++ + A F + V DP + I L
Sbjct: 266 TVPEDYIKGFIRANNTFLYQLVFDPIKRKLIPL 298
Score = 41.2 bits (95), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 48/93 (51%), Gaps = 13/93 (13%)
Query: 235 LCILLGCDYCDSIRGIGPKRAIELIK--EHRSIEKILENID---TKKYTVPEGWL--YKE 287
+CIL GCDY S+RGIG +A +++K + I K+++ I TVPE ++ +
Sbjct: 218 MCILSGCDYLSSLRGIGLAKACKVLKLANNPDIVKVIKKIGHYLKMNITVPEDYIKGFIR 277
Query: 288 ARELFRHPEIADPETIELVA------DVAPSSI 314
A F + + DP +L+ DV P ++
Sbjct: 278 ANNTFLYQLVFDPIKRKLIPLNAYEDDVDPETL 310
>gi|406604494|emb|CCH44056.1| DNA repair protein [Wickerhamomyces ciferrii]
Length = 1010
Score = 69.3 bits (168), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 39/90 (43%), Positives = 55/90 (61%), Gaps = 11/90 (12%)
Query: 318 RKICIDASMSLYQFLIAVRSE-GNQLMSVDGEPTSHLMGTFYRTIRLVEHGLKPIYVFDG 376
+++ +DAS+ +YQFL AVR + GN L S SH++G F R +L+ G+ P++VFDG
Sbjct: 25 KRMAVDASIWIYQFLKAVRDKSGNSLTS------SHIVGFFRRICKLLYFGIMPVFVFDG 78
Query: 377 KPPTLKSGELNKRME----KREDAQKALAK 402
P LK +NKR E KR+DA K K
Sbjct: 79 GAPVLKRETINKRKERRQGKRDDATKTAQK 108
Score = 63.2 bits (152), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 34/97 (35%), Positives = 57/97 (58%), Gaps = 5/97 (5%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVLE 120
AP EAEAQCA +++ V T+D D FG + ++M F E + EF+ + +E
Sbjct: 761 APMEAEAQCAELLQLNLVDGIITDDSDVFLFGGGKVYKNM-FHEKHYV---EFYSSQDIE 816
Query: 121 -GMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELI 156
+ L+ ++ I++ LLG DY + ++GIGP A+E++
Sbjct: 817 RELGLTRQKLIEIAQLLGSDYTEGLKGIGPVNAMEIL 853
>gi|440904888|gb|ELR55344.1| Exonuclease 1 [Bos grunniens mutus]
Length = 833
Score = 69.3 bits (168), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 54/153 (35%), Positives = 78/153 (50%), Gaps = 9/153 (5%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFG-SNILLRHMTFSEARKLPVQEFHLEKVL 119
AP EA+AQ A + KAG V A TED D L FG ++L+ F ++ + K L
Sbjct: 147 APYEADAQLAYLNKAGIVQAVITEDSDLLAFGCKKVILKMDQFGNGLEVDQARLGMCKQL 206
Query: 120 EGMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIK--EHRSIEKILENID---TKKY 174
G + E+F +CIL GCDY S+RGIG +A +L++ + I K++ I
Sbjct: 207 -GDVFTEEKFRYMCILSGCDYLSSLRGIGLAKACKLLRLANNPDILKVVRKIGHYLKMNI 265
Query: 175 TVPEGWL--YKEARELFRHPEVADPETIEFIDL 205
TVPE ++ + A F + V DP + I L
Sbjct: 266 TVPEDYIKGFIRANNTFLYQLVFDPIKRKLIPL 298
Score = 40.0 bits (92), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 39/73 (53%), Gaps = 7/73 (9%)
Query: 235 LCILLGCDYCDSIRGIGPKRAIELIK--EHRSIEKILENID---TKKYTVPEGWL--YKE 287
+CIL GCDY S+RGIG +A +L++ + I K++ I TVPE ++ +
Sbjct: 218 MCILSGCDYLSSLRGIGLAKACKLLRLANNPDILKVVRKIGHYLKMNITVPEDYIKGFIR 277
Query: 288 ARELFRHPEIADP 300
A F + + DP
Sbjct: 278 ANNTFLYQLVFDP 290
>gi|319411532|emb|CBQ73576.1| related to EXO1-exonuclease which interacts with Msh2p [Sporisorium
reilianum SRZ2]
Length = 758
Score = 69.3 bits (168), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 50/165 (30%), Positives = 82/165 (49%), Gaps = 4/165 (2%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFG-SNILLRHMTFSEARKLPVQEFHLEKVL 119
AP EA+AQ A + G V TED D L FG +L + A ++ Q F + +
Sbjct: 147 APYEADAQLAYLEAEGIVDGIITEDSDLLVFGCKTVLFKLDQAGNAVEMLQQRFWTNRQI 206
Query: 120 EGMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTK-KYTVPE 178
+ EF + IL GCDY SI G+G K A L++ +++++K+L+ + + K VP
Sbjct: 207 ALSGWTAVEFRQMAILSGCDYLPSIVGMGLKNAHRLLRRYKTVDKVLQAVRLEGKMRVPP 266
Query: 179 GWL--YKEARELFRHPEVADPETIEFIDLCILLGCDYCDSIRGIG 221
+ +++A F H V DP + + + L L + + + IG
Sbjct: 267 TYAREFRKAELTFVHQRVFDPRSQKLVTLTPLPDGTHDEMLPFIG 311
Score = 48.5 bits (114), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 46/78 (58%), Gaps = 3/78 (3%)
Query: 232 FIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTK-KYTVPEGWL--YKEA 288
F + IL GCDY SI G+G K A L++ +++++K+L+ + + K VP + +++A
Sbjct: 216 FRQMAILSGCDYLPSIVGMGLKNAHRLLRRYKTVDKVLQAVRLEGKMRVPPTYAREFRKA 275
Query: 289 RELFRHPEIADPETIELV 306
F H + DP + +LV
Sbjct: 276 ELTFVHQRVFDPRSQKLV 293
Score = 39.3 bits (90), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 37/67 (55%), Gaps = 1/67 (1%)
Query: 345 VDGEPTSHLMGTFYRTIRLVEH-GLKPIYVFDGKPPTLKSGELNKRMEKREDAQKALAKA 403
V G+PT + IR+++H G+KP VFDG KSG + R ++R D + +
Sbjct: 47 VLGDPTPRYIAHALSRIRMLQHFGVKPYLVFDGDKLPAKSGTEDDREQRRSDNLRRANEL 106
Query: 404 QEQGKLK 410
++QG ++
Sbjct: 107 EQQGNMQ 113
>gi|242000896|ref|XP_002435091.1| DNA-repair protein xp-G, putative [Ixodes scapularis]
gi|215498421|gb|EEC07915.1| DNA-repair protein xp-G, putative [Ixodes scapularis]
Length = 868
Score = 69.3 bits (168), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 43/134 (32%), Positives = 70/134 (52%), Gaps = 14/134 (10%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVLE 120
+P EAEAQCA + + G T T+D DA FG+ + RH+ F+ R+ V + L+ +
Sbjct: 662 SPGEAEAQCAWLEEQGLTQGTVTDDSDAWLFGARTVYRHL-FASDRRPSV--YRLQDLAT 718
Query: 121 GMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIE--KILENIDTKKYTVPE 178
+ L+ ++ + +L G DY + G+GP A+E++ E + ++LEN T
Sbjct: 719 QLGLNRQKLVAFALLCGSDYTAGVSGVGPITAMEVLSEFSGEDALQLLENFRT------- 771
Query: 179 GWLYKEARELFRHP 192
WL + RE HP
Sbjct: 772 -WLERAKREKV-HP 783
Score = 58.9 bits (141), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 35/96 (36%), Positives = 55/96 (57%), Gaps = 10/96 (10%)
Query: 316 ESRKICIDASMSLYQFLIAVR-SEGNQLMSVDGEPTSHLMGTFYRTIRLVEHGLKPIYVF 374
ES+ + +D SM L+Q L +R SEG + +HL+ F+R +L+ +G+KP++VF
Sbjct: 23 ESKVLAVDISMWLHQALKGMRDSEGGPAAN------AHLVALFHRACKLLFYGVKPVFVF 76
Query: 375 DGKPPTLKSGELNKRMEKREDAQKALAKAQEQGKLK 410
DG P LK L R ++R LA AQ + +L+
Sbjct: 77 DGGVPQLKKQTLAARHQRR---AAMLADAQRKARLR 109
>gi|302665120|ref|XP_003024173.1| hypothetical protein TRV_01672 [Trichophyton verrucosum HKI 0517]
gi|291188218|gb|EFE43562.1| hypothetical protein TRV_01672 [Trichophyton verrucosum HKI 0517]
Length = 1120
Score = 69.3 bits (168), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 60/205 (29%), Positives = 92/205 (44%), Gaps = 43/205 (20%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVLE 120
AP EAEAQCA +V G V T+D D FG + ++M F++++ + E +L LE
Sbjct: 809 APMEAEAQCAELVALGLVDGIVTDDSDTFLFGGTRIYKNM-FNQSKYV---ECYLSSDLE 864
Query: 121 G-MELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIE-------------KIL 166
L ++ I LLG DY + I GIGP A+E++ E +E KI
Sbjct: 865 KEYTLDRKKLISFSHLLGSDYTEGIPGIGPVTALEILTEFSDLEEFRDWWSQVQLGNKIP 924
Query: 167 ENI----------DTKKYTVPEGWLYKEARELFRHPEV-ADPETIEFIDLCILLGCDYCD 215
++ +T K +P G+ K + + PEV +DP ++ G D
Sbjct: 925 DDPHAGFRKKFKKNTTKLFLPPGFPDKAVEKAYLEPEVDSDPSEFKW-------GVPDLD 977
Query: 216 SIR-------GIGPKRAIELLYSFI 233
++R G P+R E+L I
Sbjct: 978 AVRQFLMATVGWSPERTDEVLVPVI 1002
Score = 61.6 bits (148), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 31/66 (46%), Positives = 44/66 (66%), Gaps = 7/66 (10%)
Query: 318 RKICIDASMSLYQFLIAVRS-EGNQLMSVDGEPTSHLMGTFYRTIRLVEHGLKPIYVFDG 376
R++ IDAS+ +YQFL AVR EGN L + +H++G F R +L+ G+KP++VFDG
Sbjct: 25 RRLAIDASIWIYQFLKAVRDKEGNALRN------AHIVGFFRRICKLLYFGIKPVFVFDG 78
Query: 377 KPPTLK 382
P LK
Sbjct: 79 GAPILK 84
>gi|371943830|gb|AEX61658.1| putative endonuclease of the XPG family [Megavirus courdo7]
gi|425701403|gb|AFX92565.1| putative endonuclease of the xpg family [Megavirus courdo11]
Length = 247
Score = 69.3 bits (168), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 34/85 (40%), Positives = 50/85 (58%)
Query: 89 LTFGSNILLRHMTFSEARKLPVQEFHLEKVLEGMELSHEEFIDLCILLGCDYCDSIRGIG 148
L G+ L + M + V L L+ L+ +F DLC+LLGCDYCD+I+GIG
Sbjct: 2 LALGAPYLFKDMLKFMTKNKDVTVISLRTTLKSTGLTMRQFTDLCVLLGCDYCDNIKGIG 61
Query: 149 PKRAIELIKEHRSIEKILENIDTKK 173
PK A ++IK+ S+E +++N KK
Sbjct: 62 PKTAYKMIKQLGSLENVIKNDHEKK 86
Score = 62.0 bits (149), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 26/45 (57%), Positives = 36/45 (80%)
Query: 232 FIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKK 276
F DLC+LLGCDYCD+I+GIGPK A ++IK+ S+E +++N KK
Sbjct: 42 FTDLCVLLGCDYCDNIKGIGPKTAYKMIKQLGSLENVIKNDHEKK 86
Score = 52.4 bits (124), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 19/29 (65%), Positives = 26/29 (89%)
Query: 201 EFIDLCILLGCDYCDSIRGIGPKRAIELL 229
+F DLC+LLGCDYCD+I+GIGPK A +++
Sbjct: 41 QFTDLCVLLGCDYCDNIKGIGPKTAYKMI 69
>gi|303270953|ref|XP_003054838.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226462812|gb|EEH60090.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 125
Score = 69.3 bits (168), Expect = 5e-09, Method: Composition-based stats.
Identities = 32/91 (35%), Positives = 52/91 (57%), Gaps = 5/91 (5%)
Query: 316 ESRKICIDASMSLYQFLIAVRSEGNQLMSVDGEPTSHLMGTFYRTIRLVEHGLKPIYVFD 375
+ RK+ +DAS+ L QF+ A+R E ++ P +HL+G F R RL+ H ++P++VFD
Sbjct: 23 QGRKVAVDASIWLVQFVKAMRDERGDML-----PNAHLLGFFRRICRLLYHRIRPVFVFD 77
Query: 376 GKPPTLKSGELNKRMEKREDAQKALAKAQEQ 406
G P LK R R++ Q + + E+
Sbjct: 78 GATPVLKYNTTRARRRVRDNDQARMKRTAEK 108
>gi|390599651|gb|EIN09047.1| hypothetical protein PUNSTDRAFT_134221 [Punctularia strigosozonata
HHB-11173 SS5]
Length = 637
Score = 69.3 bits (168), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 48/152 (31%), Positives = 74/152 (48%), Gaps = 7/152 (4%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVLE 120
AP EA+AQ A + + G V A TED D L FG +L + A V +
Sbjct: 19 APYEADAQLAYLERTGAVSAILTEDSDLLVFGCRHVLSKLDHVSATVSAVSRPDFGSLSS 78
Query: 121 G----MELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTK-KYT 175
+ S + + IL GCDY SI G+G K A L+++H+++E + + + K
Sbjct: 79 SDITLLGWSDVQLRAMAILSGCDYLPSIPGVGLKTAWSLLRKHKNVENAVRALRLEGKKP 138
Query: 176 VPEGWL--YKEARELFRHPEVADPETIEFIDL 205
VP+G+L ++ A ++F H V DP + L
Sbjct: 139 VPDGYLDAFRLAEKVFLHQRVYDPAQARLVHL 170
Score = 52.4 bits (124), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 45/75 (60%), Gaps = 3/75 (4%)
Query: 235 LCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTK-KYTVPEGWL--YKEAREL 291
+ IL GCDY SI G+G K A L+++H+++E + + + K VP+G+L ++ A ++
Sbjct: 94 MAILSGCDYLPSIPGVGLKTAWSLLRKHKNVENAVRALRLEGKKPVPDGYLDAFRLAEKV 153
Query: 292 FRHPEIADPETIELV 306
F H + DP LV
Sbjct: 154 FLHQRVYDPAQARLV 168
>gi|148227124|ref|NP_001083827.1| exonuclease 1 [Xenopus laevis]
gi|54035218|gb|AAH84102.1| EXOI protein [Xenopus laevis]
Length = 734
Score = 69.3 bits (168), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 53/153 (34%), Positives = 77/153 (50%), Gaps = 9/153 (5%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFG-SNILLRHMTFSEARKLPVQEFHLEKVL 119
AP EA++Q A + K A TED D L FG +LL+ F ++ F + + L
Sbjct: 147 APYEADSQLAYLNKNDFAEAIITEDSDLLAFGCKKVLLKMDKFGNGLEIDQARFGMCRSL 206
Query: 120 EGMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIK--EHRSIEKILENID---TKKY 174
G + E+F +CIL GCDY SI GIG +A +L+K + I K+++ I
Sbjct: 207 -GDVFTEEKFRYMCILSGCDYLPSIHGIGLAKACKLLKVANNPDITKVIQKIGQYLKTNI 265
Query: 175 TVPEGWL--YKEARELFRHPEVADPETIEFIDL 205
TVPEG++ + A F + V DP + I L
Sbjct: 266 TVPEGYIEGFLRANNTFLYQLVFDPVERKLIPL 298
Score = 45.1 bits (105), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 43/79 (54%), Gaps = 7/79 (8%)
Query: 235 LCILLGCDYCDSIRGIGPKRAIELIK--EHRSIEKILENID---TKKYTVPEGWL--YKE 287
+CIL GCDY SI GIG +A +L+K + I K+++ I TVPEG++ +
Sbjct: 218 MCILSGCDYLPSIHGIGLAKACKLLKVANNPDITKVIQKIGQYLKTNITVPEGYIEGFLR 277
Query: 288 ARELFRHPEIADPETIELV 306
A F + + DP +L+
Sbjct: 278 ANNTFLYQLVFDPVERKLI 296
>gi|354475343|ref|XP_003499889.1| PREDICTED: exonuclease 1 [Cricetulus griseus]
Length = 841
Score = 69.3 bits (168), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 52/153 (33%), Positives = 79/153 (51%), Gaps = 9/153 (5%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFG-SNILLRHMTFSEARKLPVQEFHLEKVL 119
AP EA+AQ A + KAG V A TED D L FG ++L+ F ++ + + L
Sbjct: 147 APYEADAQLAYLNKAGIVQAVITEDSDLLAFGCKKVILKMDQFGNGLEVDQARLGMCRQL 206
Query: 120 EGMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIK--EHRSIEKILENID---TKKY 174
G + E+F +CIL GCDY S+RGIG +A +++K + I K+++ I
Sbjct: 207 -GDVFTEEKFRYMCILSGCDYLSSLRGIGLAKACKVLKLANNPDIVKVIKKIGQYLKMNI 265
Query: 175 TVPEGWL--YKEARELFRHPEVADPETIEFIDL 205
TVPE ++ + A F + V DP + + L
Sbjct: 266 TVPEDYITGFIRANNTFLYQLVFDPIQRKLVPL 298
Score = 42.0 bits (97), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 30/93 (32%), Positives = 48/93 (51%), Gaps = 13/93 (13%)
Query: 235 LCILLGCDYCDSIRGIGPKRAIELIK--EHRSIEKILENID---TKKYTVPEGWL--YKE 287
+CIL GCDY S+RGIG +A +++K + I K+++ I TVPE ++ +
Sbjct: 218 MCILSGCDYLSSLRGIGLAKACKVLKLANNPDIVKVIKKIGQYLKMNITVPEDYITGFIR 277
Query: 288 ARELFRHPEIADPETIELVA------DVAPSSI 314
A F + + DP +LV DV P ++
Sbjct: 278 ANNTFLYQLVFDPIQRKLVPLNAYGNDVDPETL 310
>gi|82119986|sp|Q9W6K2.1|EXO1_XENLA RecName: Full=Exonuclease 1; AltName: Full=Exonuclease I
gi|4884906|gb|AAD31867.1|AF134570_1 exonuclease ExoI [Xenopus laevis]
Length = 734
Score = 69.3 bits (168), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 53/153 (34%), Positives = 77/153 (50%), Gaps = 9/153 (5%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFG-SNILLRHMTFSEARKLPVQEFHLEKVL 119
AP EA++Q A + K A TED D L FG +LL+ F ++ F + + L
Sbjct: 147 APYEADSQLAYLNKNDFAEAIITEDSDLLAFGCKKVLLKMDKFGNGLEIDQARFGMCRSL 206
Query: 120 EGMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIK--EHRSIEKILENID---TKKY 174
G + E+F +CIL GCDY SI GIG +A +L+K + I K+++ I
Sbjct: 207 -GDVFTEEKFRYMCILSGCDYLPSIHGIGLAKACKLLKVANNPDITKVIQKIGQYLKTNI 265
Query: 175 TVPEGWL--YKEARELFRHPEVADPETIEFIDL 205
TVPEG++ + A F + V DP + I L
Sbjct: 266 TVPEGYIEGFLRANNTFLYQLVFDPVERKLIPL 298
Score = 45.1 bits (105), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 43/79 (54%), Gaps = 7/79 (8%)
Query: 235 LCILLGCDYCDSIRGIGPKRAIELIK--EHRSIEKILENID---TKKYTVPEGWL--YKE 287
+CIL GCDY SI GIG +A +L+K + I K+++ I TVPEG++ +
Sbjct: 218 MCILSGCDYLPSIHGIGLAKACKLLKVANNPDITKVIQKIGQYLKTNITVPEGYIEGFLR 277
Query: 288 ARELFRHPEIADPETIELV 306
A F + + DP +L+
Sbjct: 278 ANNTFLYQLVFDPVERKLI 296
>gi|440292196|gb|ELP85438.1| exodeoxyribonuclease, putative [Entamoeba invadens IP1]
Length = 516
Score = 69.3 bits (168), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 43/118 (36%), Positives = 65/118 (55%), Gaps = 7/118 (5%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKV-- 118
AP EA+++ + K G V A ED D + G + SE V+EF +E
Sbjct: 147 APYEADSELGYLSKIGYVDAVLCEDSDLIVHGCKRVWFGFNLSEE---TVKEFTIENFAH 203
Query: 119 LEGMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENI--DTKKY 174
E +LS E+ + LC+ GCDYC S+RG+G K+A++L+ IEK+L+ + +T KY
Sbjct: 204 TELGQLSREKLVYLCVFAGCDYCKSLRGVGIKKALKLVTSAVDIEKVLDKMVNETFKY 261
Score = 48.9 bits (115), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 32/49 (65%)
Query: 187 ELFRHPEVADPETIEFIDLCILLGCDYCDSIRGIGPKRAIELLYSFIDL 235
E F H E+ + + LC+ GCDYC S+RG+G K+A++L+ S +D+
Sbjct: 199 ENFAHTELGQLSREKLVYLCVFAGCDYCKSLRGVGIKKALKLVTSAVDI 247
Score = 48.5 bits (114), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 21/45 (46%), Positives = 32/45 (71%), Gaps = 2/45 (4%)
Query: 235 LCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENI--DTKKY 277
LC+ GCDYC S+RG+G K+A++L+ IEK+L+ + +T KY
Sbjct: 217 LCVFAGCDYCKSLRGVGIKKALKLVTSAVDIEKVLDKMVNETFKY 261
>gi|297734295|emb|CBI15542.3| unnamed protein product [Vitis vinifera]
Length = 509
Score = 69.3 bits (168), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 51/187 (27%), Positives = 89/187 (47%), Gaps = 21/187 (11%)
Query: 30 NGAKKLLKARSSTTQGRLDSFFTIRREEKRK---APCEAEAQCAAM----VKAGKVYATA 82
GA +L + + T I R E + AP EA+AQ A + G + A
Sbjct: 94 TGASELFQRAVTITPSMAHQLIQILRTENIEFVVAPYEADAQLAYLSNLEADKGGIAAVI 153
Query: 83 TEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVLEGM-------ELSHEEFIDLCIL 135
TED D + +G R + F R +E L++V + + E F +C+L
Sbjct: 154 TEDSDLMAYGC----RAIIFKMDRYGNGEEMVLDRVFDSVARAPSFQNFDKELFTGMCVL 209
Query: 136 LGCDYCDSIRGIGPKRAIELIKEHRSIEKILENID-TKKYTVPEGWL--YKEARELFRHP 192
GCD+ S+ GIG RA ++ ++R+++++L + K+ +PE + ++EA +F+H
Sbjct: 210 AGCDFLPSVPGIGIARAYSMVAKYRNLDRVLSVLKFEKRNQMPEDYTKSFREAVAVFQHA 269
Query: 193 EVADPET 199
+ D +T
Sbjct: 270 RIYDADT 276
Score = 52.8 bits (125), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 46/74 (62%), Gaps = 3/74 (4%)
Query: 232 FIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENID-TKKYTVPEGWL--YKEA 288
F +C+L GCD+ S+ GIG RA ++ ++R+++++L + K+ +PE + ++EA
Sbjct: 203 FTGMCVLAGCDFLPSVPGIGIARAYSMVAKYRNLDRVLSVLKFEKRNQMPEDYTKSFREA 262
Query: 289 RELFRHPEIADPET 302
+F+H I D +T
Sbjct: 263 VAVFQHARIYDADT 276
>gi|303272353|ref|XP_003055538.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226463512|gb|EEH60790.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 312
Score = 68.9 bits (167), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 41/120 (34%), Positives = 68/120 (56%), Gaps = 7/120 (5%)
Query: 83 TEDMDALTFG-SNILLRHMTFSEARKLPVQEFHLEKVLEGMELSHEEFIDLCILLGCDYC 141
TED D + +G ++L + F +A++L + + L S + F+ LC+L GCD+
Sbjct: 181 TEDSDLVAYGCPSVLFKLDKFGDAQELRIAD---GAPLNFTGWSMDLFLGLCVLSGCDFL 237
Query: 142 DSIRGIGPKRAIELIKEHRSIEKILENI-DTKKYTVPEGWL--YKEARELFRHPEVADPE 198
++RGIG K+A L+ +HRSI +L + KK VP+G+ ++ A F+H V DP+
Sbjct: 238 PNVRGIGIKKAHALVAKHRSIHAVLAVLRGDKKIVVPDGYHENFRRAYWTFKHARVYDPK 297
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/73 (39%), Positives = 46/73 (63%), Gaps = 3/73 (4%)
Query: 232 FIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENI-DTKKYTVPEGWL--YKEA 288
F+ LC+L GCD+ ++RGIG K+A L+ +HRSI +L + KK VP+G+ ++ A
Sbjct: 225 FLGLCVLSGCDFLPNVRGIGIKKAHALVAKHRSIHAVLAVLRGDKKIVVPDGYHENFRRA 284
Query: 289 RELFRHPEIADPE 301
F+H + DP+
Sbjct: 285 YWTFKHARVYDPK 297
>gi|171687395|ref|XP_001908638.1| hypothetical protein [Podospora anserina S mat+]
gi|170943659|emb|CAP69311.1| unnamed protein product [Podospora anserina S mat+]
Length = 1280
Score = 68.9 bits (167), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 39/98 (39%), Positives = 55/98 (56%), Gaps = 3/98 (3%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVLE 120
AP EAEAQCA +V+ V T+D D FG + ++M S V+ + L + +
Sbjct: 923 APMEAEAQCAELVRLNLVDGIVTDDSDTFLFGGTRVYKNMFNSNKF---VECYLLRDLED 979
Query: 121 GMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKE 158
+ELS E+ I L LLG DY + I GIGP A+E++ E
Sbjct: 980 ELELSREQLIALAQLLGSDYTEGIPGIGPVTAVEILSE 1017
Score = 62.8 bits (151), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 31/70 (44%), Positives = 46/70 (65%), Gaps = 7/70 (10%)
Query: 318 RKICIDASMSLYQFLIAVRS-EGNQLMSVDGEPTSHLMGTFYRTIRLVEHGLKPIYVFDG 376
+++ +DAS+ +YQFL AVR EGN L + SH++G F R +L+ +G+KP++VFDG
Sbjct: 25 KRLAVDASIWIYQFLKAVRDKEGNALRN------SHIVGFFRRLCKLLWYGVKPVFVFDG 78
Query: 377 KPPTLKSGEL 386
P LK L
Sbjct: 79 GAPALKRATL 88
>gi|71018115|ref|XP_759288.1| hypothetical protein UM03141.1 [Ustilago maydis 521]
gi|46099138|gb|EAK84371.1| hypothetical protein UM03141.1 [Ustilago maydis 521]
Length = 828
Score = 68.9 bits (167), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 48/165 (29%), Positives = 81/165 (49%), Gaps = 4/165 (2%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFG-SNILLRHMTFSEARKLPVQEFHLEKVL 119
AP EA+AQ A + G + TED D L FG +L + A ++ F + +
Sbjct: 147 APYEADAQLAYLEAEGIIDGVVTEDSDLLVFGCKTVLFKLDQAGNAVEMLQHRFWTNRQV 206
Query: 120 EGMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTK-KYTVPE 178
+ EF + IL GCDY SI G+G K A L++ +++++K+L+ + + K +P
Sbjct: 207 ALSGWTAVEFRQMAILSGCDYLPSIVGMGLKNAHRLLRRYKTVDKVLQAVRLEGKMRIPP 266
Query: 179 GWL--YKEARELFRHPEVADPETIEFIDLCILLGCDYCDSIRGIG 221
+ +++A F H V DP + + + L L + D + IG
Sbjct: 267 TYSREFRKAELTFVHQRVFDPRSQKLVTLTPLPDGTHDDMLPFIG 311
Score = 47.4 bits (111), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 46/78 (58%), Gaps = 3/78 (3%)
Query: 232 FIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTK-KYTVPEGWL--YKEA 288
F + IL GCDY SI G+G K A L++ +++++K+L+ + + K +P + +++A
Sbjct: 216 FRQMAILSGCDYLPSIVGMGLKNAHRLLRRYKTVDKVLQAVRLEGKMRIPPTYSREFRKA 275
Query: 289 RELFRHPEIADPETIELV 306
F H + DP + +LV
Sbjct: 276 ELTFVHQRVFDPRSQKLV 293
>gi|157821351|ref|NP_001100668.1| exonuclease 1 [Rattus norvegicus]
gi|149040819|gb|EDL94776.1| exonuclease 1 (predicted) [Rattus norvegicus]
Length = 836
Score = 68.9 bits (167), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 53/153 (34%), Positives = 79/153 (51%), Gaps = 9/153 (5%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFG-SNILLRHMTFSEARKLPVQEFHLEKVL 119
AP EA+AQ A + KAG V A TED D L FG ++L+ F ++ + K L
Sbjct: 147 APYEADAQLAYLNKAGIVQAVITEDSDLLAFGCKKVILKMDQFGNGLEVDQARLGMCKQL 206
Query: 120 EGMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIK--EHRSIEKILENID---TKKY 174
G + E+F +CIL GCDY S+RGIG +A ++++ + I K+++ I
Sbjct: 207 -GDVFTEEKFRYMCILSGCDYLASLRGIGLAKACKVLRLANNPDIVKVIKKIGHYLKMNI 265
Query: 175 TVPEGWL--YKEARELFRHPEVADPETIEFIDL 205
TVPE ++ + A F + V DP + I L
Sbjct: 266 TVPEDYITGFIRANNTFLYQLVFDPIQRKLIPL 298
Score = 40.0 bits (92), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 31/107 (28%), Positives = 56/107 (52%), Gaps = 14/107 (13%)
Query: 235 LCILLGCDYCDSIRGIGPKRAIELIK--EHRSIEKILENID---TKKYTVPEGWL--YKE 287
+CIL GCDY S+RGIG +A ++++ + I K+++ I TVPE ++ +
Sbjct: 218 MCILSGCDYLASLRGIGLAKACKVLRLANNPDIVKVIKKIGHYLKMNITVPEDYITGFIR 277
Query: 288 ARELFRHPEIADPETIELVA------DVAPSSIRESRKICIDASMSL 328
A F + + DP +L+ DV P ++ + + +D S++L
Sbjct: 278 ANNTFLYQLVFDPIQRKLIPLNAYGDDVNPETLTYAGQY-VDDSVAL 323
>gi|344249656|gb|EGW05760.1| Exonuclease 1 [Cricetulus griseus]
Length = 878
Score = 68.9 bits (167), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 52/153 (33%), Positives = 79/153 (51%), Gaps = 9/153 (5%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFG-SNILLRHMTFSEARKLPVQEFHLEKVL 119
AP EA+AQ A + KAG V A TED D L FG ++L+ F ++ + + L
Sbjct: 147 APYEADAQLAYLNKAGIVQAVITEDSDLLAFGCKKVILKMDQFGNGLEVDQARLGMCRQL 206
Query: 120 EGMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIK--EHRSIEKILENID---TKKY 174
G + E+F +CIL GCDY S+RGIG +A +++K + I K+++ I
Sbjct: 207 -GDVFTEEKFRYMCILSGCDYLSSLRGIGLAKACKVLKLANNPDIVKVIKKIGQYLKMNI 265
Query: 175 TVPEGWL--YKEARELFRHPEVADPETIEFIDL 205
TVPE ++ + A F + V DP + + L
Sbjct: 266 TVPEDYITGFIRANNTFLYQLVFDPIQRKLVPL 298
Score = 41.6 bits (96), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 30/93 (32%), Positives = 48/93 (51%), Gaps = 13/93 (13%)
Query: 235 LCILLGCDYCDSIRGIGPKRAIELIK--EHRSIEKILENID---TKKYTVPEGWL--YKE 287
+CIL GCDY S+RGIG +A +++K + I K+++ I TVPE ++ +
Sbjct: 218 MCILSGCDYLSSLRGIGLAKACKVLKLANNPDIVKVIKKIGQYLKMNITVPEDYITGFIR 277
Query: 288 ARELFRHPEIADPETIELVA------DVAPSSI 314
A F + + DP +LV DV P ++
Sbjct: 278 ANNTFLYQLVFDPIQRKLVPLNAYGNDVDPETL 310
>gi|367031744|ref|XP_003665155.1| hypothetical protein MYCTH_2308577 [Myceliophthora thermophila ATCC
42464]
gi|347012426|gb|AEO59910.1| hypothetical protein MYCTH_2308577 [Myceliophthora thermophila ATCC
42464]
Length = 760
Score = 68.9 bits (167), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 51/176 (28%), Positives = 87/176 (49%), Gaps = 4/176 (2%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMT-FSEARKLPVQEFHLEKVL 119
AP EA+AQ + + G + +ED D L FG+ LL + + ++ ++F + +
Sbjct: 147 APYEADAQLVYLERQGLISGIVSEDSDLLVFGAKRLLTKLDQHGQCVEINRRDFCAVREI 206
Query: 120 EGMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENID-TKKYTVPE 178
+ EF + IL GCDY D + IG K A L+++H++ E+I++ + K+ +P+
Sbjct: 207 SLTGWTDREFRHMAILSGCDYLDGVSNIGLKTAYRLVRKHKTPERIIKMLRFDGKHQIPD 266
Query: 179 GWL--YKEARELFRHPEVADPETIEFIDLCILLGCDYCDSIRGIGPKRAIELLYSF 232
+L +K+A F H V P+ + + L L D +R IG EL S
Sbjct: 267 SYLEDFKQAELTFLHQRVFCPKKQDIVFLTELDPSSNPDEMRFIGAPVETELARSI 322
Score = 48.1 bits (113), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 38/151 (25%), Positives = 69/151 (45%), Gaps = 23/151 (15%)
Query: 232 FIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENID-TKKYTVPEGWL--YKEA 288
F + IL GCDY D + IG K A L+++H++ E+I++ + K+ +P+ +L +K+A
Sbjct: 216 FRHMAILSGCDYLDGVSNIGLKTAYRLVRKHKTPERIIKMLRFDGKHQIPDSYLEDFKQA 275
Query: 289 RELFRHPEI-----------------ADPETIELVADVAPSSIRESRKICI-DASMSLYQ 330
F H + ++P+ + + AP +R I I D + +
Sbjct: 276 ELTFLHQRVFCPKKQDIVFLTELDPSSNPDEMRFIG--APVETELARSIAIGDVNPITKE 333
Query: 331 FLIAVRSEGNQLMSVDGEPTSHLMGTFYRTI 361
++ RS G + +S P S T + I
Sbjct: 334 RIVVPRSPGKRRISQALAPASGPPRTLGKPI 364
>gi|3170238|gb|AAC32259.1| Hex1 [Homo sapiens]
gi|3703096|gb|AAC63043.1| exonuclease 1a [Homo sapiens]
Length = 803
Score = 68.6 bits (166), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 52/153 (33%), Positives = 79/153 (51%), Gaps = 9/153 (5%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFG-SNILLRHMTFSEARKLPVQEFHLEKVL 119
AP EA+AQ A + KAG V A TED D L FG ++L+ F ++ + + L
Sbjct: 147 APYEADAQLAYLNKAGIVQAIITEDSDLLAFGCKKVILKMDQFGNGLEIDQARLGMCRQL 206
Query: 120 EGMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIK--EHRSIEKILENID---TKKY 174
G + E+F +CIL GCDY S+RGIG +A ++++ + I K+++ I
Sbjct: 207 -GDVFTEEKFRYMCILSGCDYLSSLRGIGLAKACKVLRLANNPDIVKVIKKIGHYLKMNI 265
Query: 175 TVPEGWL--YKEARELFRHPEVADPETIEFIDL 205
TVPE ++ + A F + V DP + I L
Sbjct: 266 TVPEDYINGFIRANNTFLYQLVFDPIKRKLIPL 298
Score = 40.4 bits (93), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 48/93 (51%), Gaps = 13/93 (13%)
Query: 235 LCILLGCDYCDSIRGIGPKRAIELIK--EHRSIEKILENID---TKKYTVPEGWL--YKE 287
+CIL GCDY S+RGIG +A ++++ + I K+++ I TVPE ++ +
Sbjct: 218 MCILSGCDYLSSLRGIGLAKACKVLRLANNPDIVKVIKKIGHYLKMNITVPEDYINGFIR 277
Query: 288 ARELFRHPEIADPETIELVA------DVAPSSI 314
A F + + DP +L+ DV P ++
Sbjct: 278 ANNTFLYQLVFDPIKRKLIPLNAYEDDVDPETL 310
>gi|330917946|ref|XP_003298025.1| hypothetical protein PTT_08606 [Pyrenophora teres f. teres 0-1]
gi|311328997|gb|EFQ93872.1| hypothetical protein PTT_08606 [Pyrenophora teres f. teres 0-1]
Length = 1293
Score = 68.6 bits (166), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 54/176 (30%), Positives = 83/176 (47%), Gaps = 31/176 (17%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVLE 120
AP EAEAQCA +V G V T+D D FG + ++M F+ A+ V+ + + +
Sbjct: 959 APMEAEAQCAELVNLGLVDGIVTDDSDTFLFGGTRVYKNM-FNAAKF--VECYLAQDLAS 1015
Query: 121 GMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIE------------KILEN 168
L+ E+ I + LLG DY I GIGP A+E++ E +++E +I ++
Sbjct: 1016 EFSLTREKMIAIAQLLGSDYTTGIPGIGPVTALEILSEFQTLEAFRAWWDGVQSGQIRKD 1075
Query: 169 IDTK-------------KYTVPEGWLYKEARELFRHPEV-ADPETIEF--IDLCIL 208
D K K +P + E + HPEV +DPE ++ DL L
Sbjct: 1076 EDAKNPFRKRFRKNQGTKLFLPPNFPDPRVAEAYLHPEVDSDPEPFQWGVPDLASL 1131
Score = 65.1 bits (157), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 37/90 (41%), Positives = 55/90 (61%), Gaps = 11/90 (12%)
Query: 318 RKICIDASMSLYQFLIAVRS-EGNQLMSVDGEPTSHLMGTFYRTIRLVEHGLKPIYVFDG 376
+++ +DAS+ +YQFL AVR EGN L + SH++G F R +L+ G+KP++VFDG
Sbjct: 25 KRLAVDASIWIYQFLKAVRDKEGNALRN------SHIVGFFRRICKLLFIGIKPVFVFDG 78
Query: 377 KPPTLK----SGELNKRMEKREDAQKALAK 402
P LK S ++R +REDA + K
Sbjct: 79 GAPALKRQTISNRKSRREGRREDAVRTAGK 108
>gi|301766172|ref|XP_002918504.1| PREDICTED: exonuclease 1-like [Ailuropoda melanoleuca]
gi|281346532|gb|EFB22116.1| hypothetical protein PANDA_006967 [Ailuropoda melanoleuca]
Length = 842
Score = 68.6 bits (166), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 52/153 (33%), Positives = 79/153 (51%), Gaps = 9/153 (5%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFG-SNILLRHMTFSEARKLPVQEFHLEKVL 119
AP EA+AQ A + KAG V A TED D L FG ++L+ F ++ + + L
Sbjct: 147 APYEADAQLAYLNKAGIVQAIVTEDSDLLAFGCKKVILKMDQFGNGLEIDQARLGMCRQL 206
Query: 120 EGMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIK--EHRSIEKILENID---TKKY 174
G + E+F +CIL GCDY S+RGIG +A ++++ + I K+++ I
Sbjct: 207 -GDVFTEEKFRYMCILSGCDYLSSLRGIGLAKACKVLRLASNPDIVKVIKKIGHYLKMNI 265
Query: 175 TVPEGWL--YKEARELFRHPEVADPETIEFIDL 205
TVPE ++ + A F + V DP + I L
Sbjct: 266 TVPEDYIEGFIRANNTFLYQLVFDPIGRKLIPL 298
Score = 39.7 bits (91), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 43/79 (54%), Gaps = 7/79 (8%)
Query: 235 LCILLGCDYCDSIRGIGPKRAIELIK--EHRSIEKILENID---TKKYTVPEGWL--YKE 287
+CIL GCDY S+RGIG +A ++++ + I K+++ I TVPE ++ +
Sbjct: 218 MCILSGCDYLSSLRGIGLAKACKVLRLASNPDIVKVIKKIGHYLKMNITVPEDYIEGFIR 277
Query: 288 ARELFRHPEIADPETIELV 306
A F + + DP +L+
Sbjct: 278 ANNTFLYQLVFDPIGRKLI 296
>gi|3513573|gb|AAC33874.1| exonuclease I [Homo sapiens]
Length = 800
Score = 68.6 bits (166), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 52/153 (33%), Positives = 79/153 (51%), Gaps = 9/153 (5%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFG-SNILLRHMTFSEARKLPVQEFHLEKVL 119
AP EA+AQ A + KAG V A TED D L FG ++L+ F ++ + + L
Sbjct: 147 APYEADAQLAYLNKAGIVQAIITEDSDLLAFGCKKVILKMDQFGNGLEIDQARLGMCRQL 206
Query: 120 EGMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIK--EHRSIEKILENID---TKKY 174
G + E+F +CIL GCDY S+RGIG +A ++++ + I K+++ I
Sbjct: 207 -GDVFTEEKFRYMCILSGCDYLSSLRGIGLAKACKVLRLANNPDIVKVIKKIGHYLKMNI 265
Query: 175 TVPEGWL--YKEARELFRHPEVADPETIEFIDL 205
TVPE ++ + A F + V DP + I L
Sbjct: 266 TVPEDYINGFIRANNTFLYQLVFDPIKRKLIPL 298
Score = 40.4 bits (93), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 48/93 (51%), Gaps = 13/93 (13%)
Query: 235 LCILLGCDYCDSIRGIGPKRAIELIK--EHRSIEKILENID---TKKYTVPEGWL--YKE 287
+CIL GCDY S+RGIG +A ++++ + I K+++ I TVPE ++ +
Sbjct: 218 MCILSGCDYLSSLRGIGLAKACKVLRLANNPDIVKVIKKIGHYLKMNITVPEDYINGFIR 277
Query: 288 ARELFRHPEIADPETIELVA------DVAPSSI 314
A F + + DP +L+ DV P ++
Sbjct: 278 ANNTFLYQLVFDPIKRKLIPLNAYEDDVDPETL 310
>gi|3445182|gb|AAC32424.1| Hex1 [Homo sapiens]
gi|3822434|gb|AAC69880.1| exonuclease Ia [Homo sapiens]
Length = 803
Score = 68.6 bits (166), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 52/153 (33%), Positives = 79/153 (51%), Gaps = 9/153 (5%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFG-SNILLRHMTFSEARKLPVQEFHLEKVL 119
AP EA+AQ A + KAG V A TED D L FG ++L+ F ++ + + L
Sbjct: 147 APYEADAQLAYLNKAGIVQAIITEDSDLLAFGCKKVILKMDQFGNGLEIDQARLGMCRQL 206
Query: 120 EGMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIK--EHRSIEKILENID---TKKY 174
G + E+F +CIL GCDY S+RGIG +A ++++ + I K+++ I
Sbjct: 207 -GDVFTEEKFRYMCILSGCDYLSSLRGIGLAKACKVLRLANNPDIVKVIKKIGHYLKMNI 265
Query: 175 TVPEGWL--YKEARELFRHPEVADPETIEFIDL 205
TVPE ++ + A F + V DP + I L
Sbjct: 266 TVPEDYINGFIRANNTFLYQLVFDPIKRKLIPL 298
Score = 40.4 bits (93), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 48/93 (51%), Gaps = 13/93 (13%)
Query: 235 LCILLGCDYCDSIRGIGPKRAIELIK--EHRSIEKILENID---TKKYTVPEGWL--YKE 287
+CIL GCDY S+RGIG +A ++++ + I K+++ I TVPE ++ +
Sbjct: 218 MCILSGCDYLSSLRGIGLAKACKVLRLANNPDIVKVIKKIGHYLKMNITVPEDYINGFIR 277
Query: 288 ARELFRHPEIADPETIELVA------DVAPSSI 314
A F + + DP +L+ DV P ++
Sbjct: 278 ANNTFLYQLVFDPIKRKLIPLNAYEDDVDPETL 310
>gi|67937671|gb|AAY83298.1| unknown [Babesia sp. WA1]
Length = 954
Score = 68.6 bits (166), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 40/106 (37%), Positives = 63/106 (59%), Gaps = 6/106 (5%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHL-EKVL 119
AP EAEAQC + ++G+VYA ++D D L FG+ +L++ F +R V E +L ++
Sbjct: 661 APSEAEAQCCFLNQSGEVYAVISDDSDTLPFGARRILKN--FFNSR---VFEIYLSSRIK 715
Query: 120 EGMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKI 165
+ LS E+ L I+ GCDY D + GIG A+E+IK + + +
Sbjct: 716 SELGLSQEQLALLAIICGCDYTDGVCGIGIVNALEVIKAYPTFNDL 761
>gi|30685678|ref|NP_849684.1| 5'-3' exonuclease family protein [Arabidopsis thaliana]
gi|332191554|gb|AEE29675.1| 5'-3' exonuclease family protein [Arabidopsis thaliana]
Length = 577
Score = 68.6 bits (166), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 83/378 (21%), Positives = 153/378 (40%), Gaps = 67/378 (17%)
Query: 31 GAKKLLKARSSTTQGRLDSFFTIRREEKRK---APCEAEAQCAAM----VKAGKVYATAT 83
A +L + S T + + E + AP EA+AQ A + ++ G + A T
Sbjct: 117 AATELFQRAVSVTSSMAHQLIQVLKSENVEFIVAPYEADAQLAYLSSLELEQGGIAAVIT 176
Query: 84 EDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVLEGME-------LSHEEFIDLCILL 136
ED D L +G ++ F R +E L+ V + ++ E F +C+L
Sbjct: 177 EDSDLLAYGCKAVI----FKMDRYGKGEELVLDNVFQAVDQKPSFQNFDQELFTAMCVLA 232
Query: 137 GCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKK-YTVPEGW--LYKEARELFRHPE 193
GCD+ S+ G+G RA I +++S+E +L + TKK VP+ + + EA +F+H
Sbjct: 233 GCDFLPSVPGVGISRAHAFISKYQSVELVLSFLKTKKGKLVPDDYSSSFTEAVSVFQHAR 292
Query: 194 VAD----------PETIEFIDLCI----LLGCDYCDSIRGIGPKRAIELLYSFIDLCILL 239
V D P + ++L + LG D + P A+ + +D +
Sbjct: 293 VYDFDAKKLKHLKPLSHNLLNLPVEQLEFLGPD-------LSPSVAVAIAEGNVDPITMK 345
Query: 240 GCDYCDSIRGI--GPKRAI------------------ELIKEHRSIEKILEN----IDTK 275
++ R P R+ E+I+ R+ ++ + + + K
Sbjct: 346 AFNHFSVSRKPLKTPVRSFKEQEKGSSFLVCSLSKSEEIIELKRTADEAMIDPEAIVKKK 405
Query: 276 KYTVPEGWLYKEARELFRHPEIADPETIELVADVAPSSIRESRKICID-ASMSLYQFLIA 334
Y+ + LYK + R + P L+ D P IR++ +I ++ A + + +
Sbjct: 406 MYSKQDSDLYKLLAQPNRDQVVTRPSNPSLIPDNNPFKIRKTDEINLEIAEYGVQELADS 465
Query: 335 VRSEGNQLMSVDGEPTSH 352
++ + P SH
Sbjct: 466 FVTKSKAVDVASSSPNSH 483
>gi|449544559|gb|EMD35532.1| hypothetical protein CERSUDRAFT_116277 [Ceriporiopsis subvermispora
B]
Length = 683
Score = 68.6 bits (166), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 37/106 (34%), Positives = 60/106 (56%), Gaps = 4/106 (3%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVLE 120
P EAEA +A+V G A+ED D L + + LLR++T R+ P+ ++
Sbjct: 506 GPYEAEALASALVLQGLGDYVASEDTDVLVYEAP-LLRNLT---NRRGPLHVISGAELRA 561
Query: 121 GMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKIL 166
G++L F+D +LLG D+ I+ +GP RA+ I+ H +IE++L
Sbjct: 562 GLQLDRAGFVDFALLLGTDFSQRIKHVGPARALRFIRAHGTIERVL 607
Score = 46.2 bits (108), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 26/38 (68%)
Query: 232 FIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKIL 269
F+D +LLG D+ I+ +GP RA+ I+ H +IE++L
Sbjct: 570 FVDFALLLGTDFSQRIKHVGPARALRFIRAHGTIERVL 607
>gi|196007442|ref|XP_002113587.1| hypothetical protein TRIADDRAFT_26121 [Trichoplax adhaerens]
gi|190583991|gb|EDV24061.1| hypothetical protein TRIADDRAFT_26121 [Trichoplax adhaerens]
Length = 326
Score = 68.6 bits (166), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 61/172 (35%), Positives = 87/172 (50%), Gaps = 15/172 (8%)
Query: 44 QGRLDSFFTIRREEKRKAPCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFS 103
+ RL+ ++ E AP EA+AQ A + KA V A TED D L FG +L +
Sbjct: 135 KARLELIQNLKDIECIVAPYEADAQLAYLSKADLVDAVITEDSDLLVFGCKKVLFKLD-P 193
Query: 104 EARKLPVQEFHLEKV----LEGMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEH 159
R + ++ L +V L G++ HE F +CIL GCDY SI G+G K A +++K +
Sbjct: 194 NGRGIEIRLDRLREVKDIDLNGVD--HEAFRHICILSGCDYLPSIPGMGLKTAYKIMKRN 251
Query: 160 R----SIEKILENIDTKKYTVPEGW--LYKEARELFRHPEVADPETIEFIDL 205
R S K + +T K VP+ + +K A E F + V DP T I L
Sbjct: 252 RMKVYSAIKYIRRQNTMK--VPKNYETQFKMADETFLYQVVFDPVTKTTIPL 301
Score = 42.7 bits (99), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 34/99 (34%), Positives = 52/99 (52%), Gaps = 14/99 (14%)
Query: 231 SFIDLCILLGCDYCDSIRGIGPKRAIELIKEHR----SIEKILENIDTKKYTVPEGW--L 284
+F +CIL GCDY SI G+G K A +++K +R S K + +T K VP+ +
Sbjct: 220 AFRHICILSGCDYLPSIPGMGLKTAYKIMKRNRMKVYSAIKYIRRQNTMK--VPKNYETQ 277
Query: 285 YKEARELFRHPEIADP---ETIELVA---DVAPSSIRES 317
+K A E F + + DP TI L D+ PS++ +
Sbjct: 278 FKMADETFLYQVVFDPVTKTTIPLTPYPKDIEPSTLEHA 316
>gi|297661539|ref|XP_002809295.1| PREDICTED: exonuclease 1 [Pongo abelii]
Length = 846
Score = 68.6 bits (166), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 52/153 (33%), Positives = 79/153 (51%), Gaps = 9/153 (5%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFG-SNILLRHMTFSEARKLPVQEFHLEKVL 119
AP EA+AQ A + KAG V A TED D L FG ++L+ F ++ + + L
Sbjct: 147 APYEADAQLAYLNKAGIVQAIITEDSDLLAFGCKKVILKMDQFGNGLEIDQARLGMCRQL 206
Query: 120 EGMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIK--EHRSIEKILENID---TKKY 174
G + E+F +CIL GCDY S+RGIG +A ++++ + I K+++ I
Sbjct: 207 -GDVFTEEKFRYMCILSGCDYLSSLRGIGLAKACKVLRLANNPDIVKVIKKIGHYLKMNI 265
Query: 175 TVPEGWL--YKEARELFRHPEVADPETIEFIDL 205
TVPE ++ + A F + V DP + I L
Sbjct: 266 TVPEDYIKGFIRANNTFLYQLVFDPIKRKLIPL 298
Score = 40.4 bits (93), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 48/93 (51%), Gaps = 13/93 (13%)
Query: 235 LCILLGCDYCDSIRGIGPKRAIELIK--EHRSIEKILENID---TKKYTVPEGWL--YKE 287
+CIL GCDY S+RGIG +A ++++ + I K+++ I TVPE ++ +
Sbjct: 218 MCILSGCDYLSSLRGIGLAKACKVLRLANNPDIVKVIKKIGHYLKMNITVPEDYIKGFIR 277
Query: 288 ARELFRHPEIADPETIELVA------DVAPSSI 314
A F + + DP +L+ DV P ++
Sbjct: 278 ANNTFLYQLVFDPIKRKLIPLNAYEDDVDPETL 310
>gi|340517177|gb|EGR47422.1| predicted protein [Trichoderma reesei QM6a]
Length = 1166
Score = 68.6 bits (166), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 39/99 (39%), Positives = 57/99 (57%), Gaps = 5/99 (5%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVLE 120
AP EAEAQCA +V+ G V T+D D FG + ++M F+ + + E ++ LE
Sbjct: 885 APMEAEAQCAELVRLGMVDGIVTDDSDTFLFGGTRVYKNM-FNSNKFV---ECYIASDLE 940
Query: 121 G-MELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKE 158
M LS E+ I L LLG DY + + G+GP A+E++ E
Sbjct: 941 KEMSLSREQLISLAQLLGSDYTEGLPGVGPVTAVEILSE 979
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 33/78 (42%), Positives = 51/78 (65%), Gaps = 7/78 (8%)
Query: 318 RKICIDASMSLYQFLIAVRS-EGNQLMSVDGEPTSHLMGTFYRTIRLVEHGLKPIYVFDG 376
+++ +DAS+ +YQFL AVR EGN L + SH++G F R +L+ G++P++VFDG
Sbjct: 25 KRLAVDASIWIYQFLKAVRDKEGNALRN------SHIVGFFRRICKLLWFGIQPVFVFDG 78
Query: 377 KPPTLKSGELNKRMEKRE 394
P LK + KR ++RE
Sbjct: 79 GAPALKRATIQKRKQRRE 96
>gi|45198651|ref|NP_985680.1| AFR133Cp [Ashbya gossypii ATCC 10895]
gi|44984661|gb|AAS53504.1| AFR133Cp [Ashbya gossypii ATCC 10895]
gi|374108910|gb|AEY97816.1| FAFR133Cp [Ashbya gossypii FDAG1]
Length = 970
Score = 68.6 bits (166), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 36/105 (34%), Positives = 60/105 (57%), Gaps = 3/105 (2%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVLE 120
AP EAEAQCA +++ + T+D D FG + + ++M F E K V+ ++ E +
Sbjct: 727 APMEAEAQCAELLRLKLIDGIITDDSDVFLFGGSKVFKNM-FQE--KNYVEYYNTETISA 783
Query: 121 GMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKI 165
+ L +FI L L+G DY + I+GIGP IE++ + ++E+
Sbjct: 784 ELGLDRLKFIALAQLMGSDYTNGIKGIGPVSGIEILANYNTLEEF 828
Score = 62.0 bits (149), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 32/86 (37%), Positives = 54/86 (62%), Gaps = 7/86 (8%)
Query: 317 SRKICIDASMSLYQFLIAVRSE-GNQLMSVDGEPTSHLMGTFYRTIRLVEHGLKPIYVFD 375
+ ++ +DAS+ +YQFL A R + GN+L +H++G F R +L+ G+KP++VFD
Sbjct: 24 NNRMAVDASIWIYQFLKAARDKNGNRLKG------AHIIGFFRRICKLLYFGIKPVFVFD 77
Query: 376 GKPPTLKSGELNKRMEKREDAQKALA 401
G P LK + +R E+RE +++ A
Sbjct: 78 GGVPPLKRETIRQRKERREGKRESAA 103
>gi|410354891|gb|JAA44049.1| exonuclease 1 [Pan troglodytes]
gi|410354893|gb|JAA44050.1| exonuclease 1 [Pan troglodytes]
Length = 846
Score = 68.6 bits (166), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 52/153 (33%), Positives = 79/153 (51%), Gaps = 9/153 (5%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFG-SNILLRHMTFSEARKLPVQEFHLEKVL 119
AP EA+AQ A + KAG V A TED D L FG ++L+ F ++ + + L
Sbjct: 147 APYEADAQLAYLNKAGIVQAIITEDSDLLAFGCKKVILKMDQFGNGLEIDQARLGMCRQL 206
Query: 120 EGMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIK--EHRSIEKILENID---TKKY 174
G + E+F +CIL GCDY S+RGIG +A ++++ + I K+++ I
Sbjct: 207 -GDVFTEEKFRYMCILSGCDYLSSLRGIGLAKACKVLRLANNPDIVKVIKKIGHYLKMNI 265
Query: 175 TVPEGWL--YKEARELFRHPEVADPETIEFIDL 205
TVPE ++ + A F + V DP + I L
Sbjct: 266 TVPEDYIKGFIRANNTFLYQLVFDPIKRKLIPL 298
Score = 40.4 bits (93), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 48/93 (51%), Gaps = 13/93 (13%)
Query: 235 LCILLGCDYCDSIRGIGPKRAIELIK--EHRSIEKILENID---TKKYTVPEGWL--YKE 287
+CIL GCDY S+RGIG +A ++++ + I K+++ I TVPE ++ +
Sbjct: 218 MCILSGCDYLSSLRGIGLAKACKVLRLANNPDIVKVIKKIGHYLKMNITVPEDYIKGFIR 277
Query: 288 ARELFRHPEIADPETIELVA------DVAPSSI 314
A F + + DP +L+ DV P ++
Sbjct: 278 ANNTFLYQLVFDPIKRKLIPLNAYEDDVDPETL 310
>gi|403416579|emb|CCM03279.1| predicted protein [Fibroporia radiculosa]
Length = 663
Score = 68.6 bits (166), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 38/107 (35%), Positives = 58/107 (54%), Gaps = 4/107 (3%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVLE 120
P EAEA +A+V G A+ED D L + + L+R++ R P+ V
Sbjct: 479 GPYEAEALASALVLNGYADYVASEDTDVLVYDAP-LIRNIA---NRNGPLVVISGTDVRT 534
Query: 121 GMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILE 167
++L F+D +LLG D+ I+ IGP RA++ I+ H SIE++LE
Sbjct: 535 VLQLDRASFVDFALLLGTDFSQRIKNIGPARALKFIRAHGSIERVLE 581
Score = 52.4 bits (124), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 20/40 (50%), Positives = 29/40 (72%)
Query: 231 SFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILE 270
SF+D +LLG D+ I+ IGP RA++ I+ H SIE++LE
Sbjct: 542 SFVDFALLLGTDFSQRIKNIGPARALKFIRAHGSIERVLE 581
>gi|114573428|ref|XP_001160902.1| PREDICTED: exonuclease 1 isoform 2 [Pan troglodytes]
gi|114573430|ref|XP_001160941.1| PREDICTED: exonuclease 1 isoform 3 [Pan troglodytes]
gi|410251950|gb|JAA13942.1| exonuclease 1 [Pan troglodytes]
gi|410251952|gb|JAA13943.1| exonuclease 1 [Pan troglodytes]
gi|410297546|gb|JAA27373.1| exonuclease 1 [Pan troglodytes]
Length = 846
Score = 68.6 bits (166), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 52/153 (33%), Positives = 79/153 (51%), Gaps = 9/153 (5%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFG-SNILLRHMTFSEARKLPVQEFHLEKVL 119
AP EA+AQ A + KAG V A TED D L FG ++L+ F ++ + + L
Sbjct: 147 APYEADAQLAYLNKAGIVQAIITEDSDLLAFGCKKVILKMDQFGNGLEIDQARLGMCRQL 206
Query: 120 EGMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIK--EHRSIEKILENID---TKKY 174
G + E+F +CIL GCDY S+RGIG +A ++++ + I K+++ I
Sbjct: 207 -GDVFTEEKFRYMCILSGCDYLSSLRGIGLAKACKVLRLANNPDIVKVIKKIGHYLKMNI 265
Query: 175 TVPEGWL--YKEARELFRHPEVADPETIEFIDL 205
TVPE ++ + A F + V DP + I L
Sbjct: 266 TVPEDYIKGFIRANNTFLYQLVFDPIKRKLIPL 298
Score = 40.0 bits (92), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 48/93 (51%), Gaps = 13/93 (13%)
Query: 235 LCILLGCDYCDSIRGIGPKRAIELIK--EHRSIEKILENID---TKKYTVPEGWL--YKE 287
+CIL GCDY S+RGIG +A ++++ + I K+++ I TVPE ++ +
Sbjct: 218 MCILSGCDYLSSLRGIGLAKACKVLRLANNPDIVKVIKKIGHYLKMNITVPEDYIKGFIR 277
Query: 288 ARELFRHPEIADPETIELVA------DVAPSSI 314
A F + + DP +L+ DV P ++
Sbjct: 278 ANNTFLYQLVFDPIKRKLIPLNAYEDDVDPETL 310
>gi|4249655|gb|AAD13754.1| exonuclease I [Homo sapiens]
Length = 846
Score = 68.6 bits (166), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 52/153 (33%), Positives = 79/153 (51%), Gaps = 9/153 (5%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFG-SNILLRHMTFSEARKLPVQEFHLEKVL 119
AP EA+AQ A + KAG V A TED D L FG ++L+ F ++ + + L
Sbjct: 147 APYEADAQLAYLNKAGIVQAIITEDSDLLAFGCKKVILKMDQFGNGLEIDQARLGMCRQL 206
Query: 120 EGMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIK--EHRSIEKILENID---TKKY 174
G + E+F +CIL GCDY S+RGIG +A ++++ + I K+++ I
Sbjct: 207 -GDVFTEEKFRYMCILSGCDYLSSLRGIGLAKACKVLRLANNPDIVKVIKKIGHYLKMNI 265
Query: 175 TVPEGWL--YKEARELFRHPEVADPETIEFIDL 205
TVPE ++ + A F + V DP + I L
Sbjct: 266 TVPEDYINGFIRANNTFLYQLVFDPIKRKLIPL 298
Score = 40.4 bits (93), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 48/93 (51%), Gaps = 13/93 (13%)
Query: 235 LCILLGCDYCDSIRGIGPKRAIELIK--EHRSIEKILENID---TKKYTVPEGWL--YKE 287
+CIL GCDY S+RGIG +A ++++ + I K+++ I TVPE ++ +
Sbjct: 218 MCILSGCDYLSSLRGIGLAKACKVLRLANNPDIVKVIKKIGHYLKMNITVPEDYINGFIR 277
Query: 288 ARELFRHPEIADPETIELVA------DVAPSSI 314
A F + + DP +L+ DV P ++
Sbjct: 278 ANNTFLYQLVFDPIKRKLIPLNAYEDDVDPETL 310
>gi|410220862|gb|JAA07650.1| exonuclease 1 [Pan troglodytes]
Length = 846
Score = 68.6 bits (166), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 52/153 (33%), Positives = 79/153 (51%), Gaps = 9/153 (5%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFG-SNILLRHMTFSEARKLPVQEFHLEKVL 119
AP EA+AQ A + KAG V A TED D L FG ++L+ F ++ + + L
Sbjct: 147 APYEADAQLAYLNKAGIVQAIITEDSDLLAFGCKKVILKMDQFGNGLEIDQARLGMCRQL 206
Query: 120 EGMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIK--EHRSIEKILENID---TKKY 174
G + E+F +CIL GCDY S+RGIG +A ++++ + I K+++ I
Sbjct: 207 -GDVFTEEKFRYMCILSGCDYLSSLRGIGLAKACKVLRLANNPDIVKVIKKIGHYLKMNI 265
Query: 175 TVPEGWL--YKEARELFRHPEVADPETIEFIDL 205
TVPE ++ + A F + V DP + I L
Sbjct: 266 TVPEDYIKGFIRANNTFLYQLVFDPIKRKLIPL 298
Score = 40.0 bits (92), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 48/93 (51%), Gaps = 13/93 (13%)
Query: 235 LCILLGCDYCDSIRGIGPKRAIELIK--EHRSIEKILENID---TKKYTVPEGWL--YKE 287
+CIL GCDY S+RGIG +A ++++ + I K+++ I TVPE ++ +
Sbjct: 218 MCILSGCDYLSSLRGIGLAKACKVLRLANNPDIVKVIKKIGHYLKMNITVPEDYIKGFIR 277
Query: 288 ARELFRHPEIADPETIELVA------DVAPSSI 314
A F + + DP +L+ DV P ++
Sbjct: 278 ANNTFLYQLVFDPIKRKLIPLNAYEDDVDPETL 310
>gi|426334339|ref|XP_004028711.1| PREDICTED: exonuclease 1 isoform 1 [Gorilla gorilla gorilla]
gi|426334341|ref|XP_004028712.1| PREDICTED: exonuclease 1 isoform 2 [Gorilla gorilla gorilla]
Length = 846
Score = 68.6 bits (166), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 52/153 (33%), Positives = 79/153 (51%), Gaps = 9/153 (5%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFG-SNILLRHMTFSEARKLPVQEFHLEKVL 119
AP EA+AQ A + KAG V A TED D L FG ++L+ F ++ + + L
Sbjct: 147 APYEADAQLAYLNKAGIVQAIITEDSDLLAFGCKKVILKMDQFGNGLEIDQARLGMCRQL 206
Query: 120 EGMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIK--EHRSIEKILENID---TKKY 174
G + E+F +CIL GCDY S+RGIG +A ++++ + I K+++ I
Sbjct: 207 -GDVFTEEKFRYMCILSGCDYLSSLRGIGLAKACKVLRLANNPDIVKVIKKIGHYLKMNI 265
Query: 175 TVPEGWL--YKEARELFRHPEVADPETIEFIDL 205
TVPE ++ + A F + V DP + I L
Sbjct: 266 TVPEDYIKGFIRANNTFLYQLVFDPIKRKLIPL 298
Score = 40.0 bits (92), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 48/93 (51%), Gaps = 13/93 (13%)
Query: 235 LCILLGCDYCDSIRGIGPKRAIELIK--EHRSIEKILENID---TKKYTVPEGWL--YKE 287
+CIL GCDY S+RGIG +A ++++ + I K+++ I TVPE ++ +
Sbjct: 218 MCILSGCDYLSSLRGIGLAKACKVLRLANNPDIVKVIKKIGHYLKMNITVPEDYIKGFIR 277
Query: 288 ARELFRHPEIADPETIELVA------DVAPSSI 314
A F + + DP +L+ DV P ++
Sbjct: 278 ANNTFLYQLVFDPIKRKLIPLNAYEDDVDPETL 310
>gi|345571348|gb|EGX54162.1| hypothetical protein AOL_s00004g195 [Arthrobotrys oligospora ATCC
24927]
Length = 1248
Score = 68.6 bits (166), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 33/79 (41%), Positives = 51/79 (64%), Gaps = 7/79 (8%)
Query: 318 RKICIDASMSLYQFLIAVRS-EGNQLMSVDGEPTSHLMGTFYRTIRLVEHGLKPIYVFDG 376
+++ IDAS+ +YQFL AVR EGN L + +H++G F R ++L+ HG++P++VFDG
Sbjct: 25 KRLAIDASIWIYQFLKAVRDKEGNALRN------AHVVGFFRRIVKLLFHGIRPVFVFDG 78
Query: 377 KPPTLKSGELNKRMEKRED 395
P LK + R R+D
Sbjct: 79 GAPLLKRQTIANRKSHRQD 97
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 37/97 (38%), Positives = 55/97 (56%), Gaps = 5/97 (5%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVLE 120
AP EAEAQCA +V G V T+D D FG + ++M F++A+ + E +L LE
Sbjct: 888 APMEAEAQCAELVNLGLVDGIVTDDSDIFLFGGTRVYKNM-FNQAKYV---ECYLASDLE 943
Query: 121 G-MELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELI 156
L ++ I L LLG DY + + G+GP A+E++
Sbjct: 944 NEYSLDRKKMIRLAHLLGSDYTEGLVGVGPVTALEVL 980
>gi|327298531|ref|XP_003233959.1| DNA excision repair protein [Trichophyton rubrum CBS 118892]
gi|326464137|gb|EGD89590.1| DNA excision repair protein [Trichophyton rubrum CBS 118892]
Length = 1121
Score = 68.6 bits (166), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 59/205 (28%), Positives = 90/205 (43%), Gaps = 43/205 (20%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVLE 120
AP EAEAQCA +V G V T+D D FG + ++M F++++ + E +L LE
Sbjct: 810 APMEAEAQCAELVTLGLVDGIVTDDSDTFLFGGTRIYKNM-FNQSKYV---ECYLSSDLE 865
Query: 121 G-MELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIE-------------KIL 166
L ++ I LLG DY + I GIGP A+E++ E +E KI
Sbjct: 866 KEYTLDRKKLISFSHLLGSDYTEGIPGIGPVTALEILTEFSDLEEFRDWWSQVQLGYKIP 925
Query: 167 ENI----------DTKKYTVPEGWLYKEARELFRHPEV-ADPETIEFIDLCILLGCDYCD 215
++ + K +P G+ K + + PEV +DP + G D
Sbjct: 926 DDPHEGFRKKFKKNVTKLFLPPGFPNKAVEKAYLEPEVDSDPS-------GFIWGVPDLD 978
Query: 216 SIR-------GIGPKRAIELLYSFI 233
++R G P+R E+L I
Sbjct: 979 AVRQFLMATVGWSPERTDEVLVPVI 1003
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 31/66 (46%), Positives = 44/66 (66%), Gaps = 7/66 (10%)
Query: 318 RKICIDASMSLYQFLIAVRS-EGNQLMSVDGEPTSHLMGTFYRTIRLVEHGLKPIYVFDG 376
R++ IDAS+ +YQFL AVR EGN L + +H++G F R +L+ G+KP++VFDG
Sbjct: 25 RRLAIDASIWIYQFLKAVRDKEGNALRN------AHIVGFFRRICKLLYFGIKPVFVFDG 78
Query: 377 KPPTLK 382
P LK
Sbjct: 79 GAPILK 84
>gi|119590512|gb|EAW70106.1| exonuclease 1, isoform CRA_c [Homo sapiens]
Length = 803
Score = 68.6 bits (166), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 52/153 (33%), Positives = 79/153 (51%), Gaps = 9/153 (5%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFG-SNILLRHMTFSEARKLPVQEFHLEKVL 119
AP EA+AQ A + KAG V A TED D L FG ++L+ F ++ + + L
Sbjct: 147 APYEADAQLAYLNKAGIVQAIITEDSDLLAFGCKKVILKMDQFGNGLEIDQARLGMCRQL 206
Query: 120 EGMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIK--EHRSIEKILENID---TKKY 174
G + E+F +CIL GCDY S+RGIG +A ++++ + I K+++ I
Sbjct: 207 -GDVFTEEKFRYMCILSGCDYLSSLRGIGLAKACKVLRLANNPDIVKVIKKIGHYLKMNI 265
Query: 175 TVPEGWL--YKEARELFRHPEVADPETIEFIDL 205
TVPE ++ + A F + V DP + I L
Sbjct: 266 TVPEDYINGFIRANNTFLYQLVFDPIKRKLIPL 298
Score = 40.4 bits (93), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 48/93 (51%), Gaps = 13/93 (13%)
Query: 235 LCILLGCDYCDSIRGIGPKRAIELIK--EHRSIEKILENID---TKKYTVPEGWL--YKE 287
+CIL GCDY S+RGIG +A ++++ + I K+++ I TVPE ++ +
Sbjct: 218 MCILSGCDYLSSLRGIGLAKACKVLRLANNPDIVKVIKKIGHYLKMNITVPEDYINGFIR 277
Query: 288 ARELFRHPEIADPETIELVA------DVAPSSI 314
A F + + DP +L+ DV P ++
Sbjct: 278 ANNTFLYQLVFDPIKRKLIPLNAYEDDVDPETL 310
>gi|384493818|gb|EIE84309.1| hypothetical protein RO3G_09019 [Rhizopus delemar RA 99-880]
Length = 816
Score = 68.6 bits (166), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 38/101 (37%), Positives = 59/101 (58%), Gaps = 3/101 (2%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVLE 120
+P EAEAQCAA+ + + T T+D D FG++ + ++M F++ R V+ + E +
Sbjct: 675 SPMEAEAQCAALERLKLIEGTITDDSDVFLFGASRVYKNM-FNQQRF--VECYRTEDIER 731
Query: 121 GMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRS 161
M LS + I L LLG DY + I G+GP A+E++ E S
Sbjct: 732 EMMLSRNKLIQLAYLLGSDYTEGIPGVGPVAAMEILDEFPS 772
>gi|397508251|ref|XP_003824575.1| PREDICTED: exonuclease 1 isoform 1 [Pan paniscus]
gi|397508253|ref|XP_003824576.1| PREDICTED: exonuclease 1 isoform 2 [Pan paniscus]
Length = 846
Score = 68.6 bits (166), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 52/153 (33%), Positives = 79/153 (51%), Gaps = 9/153 (5%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFG-SNILLRHMTFSEARKLPVQEFHLEKVL 119
AP EA+AQ A + KAG V A TED D L FG ++L+ F ++ + + L
Sbjct: 147 APYEADAQLAYLNKAGIVQAIITEDSDLLAFGCKKVILKMDQFGNGLEIDQARLGMCRQL 206
Query: 120 EGMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIK--EHRSIEKILENID---TKKY 174
G + E+F +CIL GCDY S+RGIG +A ++++ + I K+++ I
Sbjct: 207 -GDVFTEEKFRYMCILSGCDYLSSLRGIGLAKACKVLRLANNPDIVKVIKKIGHYLKMNI 265
Query: 175 TVPEGWL--YKEARELFRHPEVADPETIEFIDL 205
TVPE ++ + A F + V DP + I L
Sbjct: 266 TVPEDYIKGFIRANNTFLYQLVFDPIKRKLIPL 298
Score = 40.0 bits (92), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 48/93 (51%), Gaps = 13/93 (13%)
Query: 235 LCILLGCDYCDSIRGIGPKRAIELIK--EHRSIEKILENID---TKKYTVPEGWL--YKE 287
+CIL GCDY S+RGIG +A ++++ + I K+++ I TVPE ++ +
Sbjct: 218 MCILSGCDYLSSLRGIGLAKACKVLRLANNPDIVKVIKKIGHYLKMNITVPEDYIKGFIR 277
Query: 288 ARELFRHPEIADPETIELVA------DVAPSSI 314
A F + + DP +L+ DV P ++
Sbjct: 278 ANNTFLYQLVFDPIKRKLIPLNAYEDDVDPETL 310
>gi|18394573|ref|NP_564047.1| 5'-3' exonuclease family protein [Arabidopsis thaliana]
gi|15215782|gb|AAK91436.1| At1g18090/T10F20_6 [Arabidopsis thaliana]
gi|21360461|gb|AAM47346.1| At1g18090/T10F20_6 [Arabidopsis thaliana]
gi|332191553|gb|AEE29674.1| 5'-3' exonuclease family protein [Arabidopsis thaliana]
Length = 577
Score = 68.6 bits (166), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 83/378 (21%), Positives = 153/378 (40%), Gaps = 67/378 (17%)
Query: 31 GAKKLLKARSSTTQGRLDSFFTIRREEKRK---APCEAEAQCAAM----VKAGKVYATAT 83
A +L + S T + + E + AP EA+AQ A + ++ G + A T
Sbjct: 117 AATELFQRAVSVTSSMAHQLIQVLKSENVEFIVAPYEADAQLAYLSSLELEQGGIAAVIT 176
Query: 84 EDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVLEGME-------LSHEEFIDLCILL 136
ED D L +G ++ F R +E L+ V + ++ E F +C+L
Sbjct: 177 EDSDLLAYGCKAVI----FKMDRYGKGEELVLDNVFQAVDQKPSFQNFDQELFTAMCVLA 232
Query: 137 GCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKK-YTVPEGW--LYKEARELFRHPE 193
GCD+ S+ G+G RA I +++S+E +L + TKK VP+ + + EA +F+H
Sbjct: 233 GCDFLPSVPGVGISRAHAFISKYQSVELVLSFLKTKKGKLVPDDYSSSFTEAVSVFQHAR 292
Query: 194 VAD----------PETIEFIDLCI----LLGCDYCDSIRGIGPKRAIELLYSFIDLCILL 239
V D P + ++L + LG D + P A+ + +D +
Sbjct: 293 VYDFDAKKLKHLKPLSHNLLNLPVEQLEFLGPD-------LSPSVAVAIAEGNVDPITMK 345
Query: 240 GCDYCDSIRGI--GPKRAI------------------ELIKEHRSIEKILEN----IDTK 275
++ R P R+ E+I+ R+ ++ + + + K
Sbjct: 346 AFNHFSVSRKPLKTPVRSFKEQEKGSSFLVCSLSKSEEIIELKRTADEAMIDPEAIVKKK 405
Query: 276 KYTVPEGWLYKEARELFRHPEIADPETIELVADVAPSSIRESRKICID-ASMSLYQFLIA 334
Y+ + LYK + R + P L+ D P IR++ +I ++ A + + +
Sbjct: 406 MYSKQDSDLYKLLAQPNRDQVVTRPSNPSLIPDNNPFKIRKTDEINLEIAEYGVQELADS 465
Query: 335 VRSEGNQLMSVDGEPTSH 352
++ + P SH
Sbjct: 466 FVTKSKAVDVASSSPNSH 483
>gi|255721529|ref|XP_002545699.1| hypothetical protein CTRG_00480 [Candida tropicalis MYA-3404]
gi|240136188|gb|EER35741.1| hypothetical protein CTRG_00480 [Candida tropicalis MYA-3404]
Length = 963
Score = 68.6 bits (166), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 37/105 (35%), Positives = 61/105 (58%), Gaps = 3/105 (2%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVLE 120
AP EAEAQCA + + G V T+D D FG + + ++M +K V+ + + +
Sbjct: 723 APMEAEAQCAELFRIGLVDGIVTDDSDCFLFGGDKIYKNMF---DQKQYVECYMQDDLST 779
Query: 121 GMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKI 165
M L+ ++ I+L +LLG DY + I+GIGP A+E++ E ++K
Sbjct: 780 KMGLTRKKLIELALLLGSDYTEGIKGIGPVLAMEILAEFGDLKKF 824
Score = 65.1 bits (157), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 40/93 (43%), Positives = 55/93 (59%), Gaps = 15/93 (16%)
Query: 318 RKICIDASMSLYQFLIAVRS-EGNQLMSVDGEPTSHLMGTFYRTIRLVEHGLKPIYVFDG 376
+K+ IDAS+ +YQFL AVR +GN L S SH++G F R +L+ G+ PI+VFDG
Sbjct: 25 KKLAIDASIWIYQFLKAVRDKDGNSLSS------SHIVGFFRRICKLLYFGILPIFVFDG 78
Query: 377 KPPTLKSGELNKRMEKRE--------DAQKALA 401
P LK + +R ++RE AQK LA
Sbjct: 79 GVPALKRKTIVQRKQRREKHSMSTKDTAQKLLA 111
Score = 43.5 bits (101), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 18/34 (52%), Positives = 24/34 (70%)
Query: 202 FIDLCILLGCDYCDSIRGIGPKRAIELLYSFIDL 235
I+L +LLG DY + I+GIGP A+E+L F DL
Sbjct: 788 LIELALLLGSDYTEGIKGIGPVLAMEILAEFGDL 821
Score = 40.4 bits (93), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 25/37 (67%)
Query: 232 FIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKI 268
I+L +LLG DY + I+GIGP A+E++ E ++K
Sbjct: 788 LIELALLLGSDYTEGIKGIGPVLAMEILAEFGDLKKF 824
>gi|332236488|ref|XP_003267433.1| PREDICTED: exonuclease 1 [Nomascus leucogenys]
Length = 817
Score = 68.6 bits (166), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 52/153 (33%), Positives = 79/153 (51%), Gaps = 9/153 (5%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFG-SNILLRHMTFSEARKLPVQEFHLEKVL 119
AP EA+AQ A + KAG V A TED D L FG ++L+ F ++ + + L
Sbjct: 118 APYEADAQLAYLNKAGIVQAIITEDSDLLAFGCKKVILKMDQFGNGLEIDQARLGMCRQL 177
Query: 120 EGMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIK--EHRSIEKILENID---TKKY 174
G + E+F +CIL GCDY S+RGIG +A ++++ + I K+++ I
Sbjct: 178 -GDVFTEEKFRYMCILSGCDYLSSLRGIGLAKACKVLRLANNPDIVKVIKKIGHYLKMNI 236
Query: 175 TVPEGWL--YKEARELFRHPEVADPETIEFIDL 205
TVPE ++ + A F + V DP + I L
Sbjct: 237 TVPEDYIKGFIRANNTFLYQLVFDPIKRKLIPL 269
Score = 40.4 bits (93), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 48/93 (51%), Gaps = 13/93 (13%)
Query: 235 LCILLGCDYCDSIRGIGPKRAIELIK--EHRSIEKILENID---TKKYTVPEGWL--YKE 287
+CIL GCDY S+RGIG +A ++++ + I K+++ I TVPE ++ +
Sbjct: 189 MCILSGCDYLSSLRGIGLAKACKVLRLANNPDIVKVIKKIGHYLKMNITVPEDYIKGFIR 248
Query: 288 ARELFRHPEIADPETIELVA------DVAPSSI 314
A F + + DP +L+ DV P ++
Sbjct: 249 ANNTFLYQLVFDPIKRKLIPLNAYEDDVDPETL 281
>gi|158256018|dbj|BAF83980.1| unnamed protein product [Homo sapiens]
Length = 845
Score = 68.6 bits (166), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 52/153 (33%), Positives = 79/153 (51%), Gaps = 9/153 (5%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFG-SNILLRHMTFSEARKLPVQEFHLEKVL 119
AP EA+AQ A + KAG V A TED D L FG ++L+ F ++ + + L
Sbjct: 147 APYEADAQLAYLNKAGIVQAIITEDSDLLAFGCKKVILKMDQFGNGLEIDQARLGMCRQL 206
Query: 120 EGMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIK--EHRSIEKILENID---TKKY 174
G + E+F +CIL GCDY S+RGIG +A ++++ + I K+++ I
Sbjct: 207 -GDVFTEEKFRYMCILSGCDYLSSLRGIGLAKACKVLRLANNPDIVKVIKKIGHYLKMNI 265
Query: 175 TVPEGWL--YKEARELFRHPEVADPETIEFIDL 205
TVPE ++ + A F + V DP + I L
Sbjct: 266 TVPEDYINGFIRANNTFLYQLVFDPIKRKLIPL 298
Score = 40.0 bits (92), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 48/93 (51%), Gaps = 13/93 (13%)
Query: 235 LCILLGCDYCDSIRGIGPKRAIELIK--EHRSIEKILENID---TKKYTVPEGWL--YKE 287
+CIL GCDY S+RGIG +A ++++ + I K+++ I TVPE ++ +
Sbjct: 218 MCILSGCDYLSSLRGIGLAKACKVLRLANNPDIVKVIKKIGHYLKMNITVPEDYINGFIR 277
Query: 288 ARELFRHPEIADPETIELVA------DVAPSSI 314
A F + + DP +L+ DV P ++
Sbjct: 278 ANNTFLYQLVFDPIKRKLIPLNAYEDDVDPETL 310
>gi|359320017|ref|XP_003639234.1| PREDICTED: exonuclease 1-like [Canis lupus familiaris]
Length = 836
Score = 68.6 bits (166), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 52/153 (33%), Positives = 79/153 (51%), Gaps = 9/153 (5%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFG-SNILLRHMTFSEARKLPVQEFHLEKVL 119
AP EA+AQ A + KAG V A TED D L FG ++L+ F ++ + + L
Sbjct: 147 APYEADAQLAYLNKAGIVQAIITEDSDLLAFGCKKVILKMDQFGNGLEIDQARLGMCRQL 206
Query: 120 EGMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIK--EHRSIEKILENID---TKKY 174
G + E+F +CIL GCDY S+RGIG +A ++++ + I K+++ I
Sbjct: 207 -GDVFTEEKFRYMCILSGCDYLSSLRGIGLAKACKVLRLANNPDIVKVIKKIGHYLKMNI 265
Query: 175 TVPEGWL--YKEARELFRHPEVADPETIEFIDL 205
TVPE ++ + A F + V DP + I L
Sbjct: 266 TVPEDYIKGFIRANNTFLYQLVFDPVRRKLIPL 298
Score = 40.0 bits (92), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 43/79 (54%), Gaps = 7/79 (8%)
Query: 235 LCILLGCDYCDSIRGIGPKRAIELIK--EHRSIEKILENID---TKKYTVPEGWL--YKE 287
+CIL GCDY S+RGIG +A ++++ + I K+++ I TVPE ++ +
Sbjct: 218 MCILSGCDYLSSLRGIGLAKACKVLRLANNPDIVKVIKKIGHYLKMNITVPEDYIKGFIR 277
Query: 288 ARELFRHPEIADPETIELV 306
A F + + DP +L+
Sbjct: 278 ANNTFLYQLVFDPVRRKLI 296
>gi|284055276|ref|NP_003677.4| exonuclease 1 isoform a [Homo sapiens]
Length = 803
Score = 68.6 bits (166), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 52/153 (33%), Positives = 79/153 (51%), Gaps = 9/153 (5%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFG-SNILLRHMTFSEARKLPVQEFHLEKVL 119
AP EA+AQ A + KAG V A TED D L FG ++L+ F ++ + + L
Sbjct: 147 APYEADAQLAYLNKAGIVQAIITEDSDLLAFGCKKVILKMDQFGNGLEIDQARLGMCRQL 206
Query: 120 EGMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIK--EHRSIEKILENID---TKKY 174
G + E+F +CIL GCDY S+RGIG +A ++++ + I K+++ I
Sbjct: 207 -GDVFTEEKFRYMCILSGCDYLSSLRGIGLAKACKVLRLANNPDIVKVIKKIGHYLKMNI 265
Query: 175 TVPEGWL--YKEARELFRHPEVADPETIEFIDL 205
TVPE ++ + A F + V DP + I L
Sbjct: 266 TVPEDYINGFIRANNTFLYQLVFDPIKRKLIPL 298
Score = 40.4 bits (93), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 48/93 (51%), Gaps = 13/93 (13%)
Query: 235 LCILLGCDYCDSIRGIGPKRAIELIK--EHRSIEKILENID---TKKYTVPEGWL--YKE 287
+CIL GCDY S+RGIG +A ++++ + I K+++ I TVPE ++ +
Sbjct: 218 MCILSGCDYLSSLRGIGLAKACKVLRLANNPDIVKVIKKIGHYLKMNITVPEDYINGFIR 277
Query: 288 ARELFRHPEIADPETIELVA------DVAPSSI 314
A F + + DP +L+ DV P ++
Sbjct: 278 ANNTFLYQLVFDPIKRKLIPLNAYEDDVDPETL 310
>gi|119590510|gb|EAW70104.1| exonuclease 1, isoform CRA_b [Homo sapiens]
Length = 763
Score = 68.2 bits (165), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 52/153 (33%), Positives = 79/153 (51%), Gaps = 9/153 (5%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFG-SNILLRHMTFSEARKLPVQEFHLEKVL 119
AP EA+AQ A + KAG V A TED D L FG ++L+ F ++ + + L
Sbjct: 107 APYEADAQLAYLNKAGIVQAIITEDSDLLAFGCKKVILKMDQFGNGLEIDQARLGMCRQL 166
Query: 120 EGMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIK--EHRSIEKILENID---TKKY 174
G + E+F +CIL GCDY S+RGIG +A ++++ + I K+++ I
Sbjct: 167 -GDVFTEEKFRYMCILSGCDYLSSLRGIGLAKACKVLRLANNPDIVKVIKKIGHYLKMNI 225
Query: 175 TVPEGWL--YKEARELFRHPEVADPETIEFIDL 205
TVPE ++ + A F + V DP + I L
Sbjct: 226 TVPEDYINGFIRANNTFLYQLVFDPIKRKLIPL 258
Score = 40.0 bits (92), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 48/93 (51%), Gaps = 13/93 (13%)
Query: 235 LCILLGCDYCDSIRGIGPKRAIELIK--EHRSIEKILENID---TKKYTVPEGWL--YKE 287
+CIL GCDY S+RGIG +A ++++ + I K+++ I TVPE ++ +
Sbjct: 178 MCILSGCDYLSSLRGIGLAKACKVLRLANNPDIVKVIKKIGHYLKMNITVPEDYINGFIR 237
Query: 288 ARELFRHPEIADPETIELVA------DVAPSSI 314
A F + + DP +L+ DV P ++
Sbjct: 238 ANNTFLYQLVFDPIKRKLIPLNAYEDDVDPETL 270
>gi|171679457|ref|XP_001904675.1| hypothetical protein [Podospora anserina S mat+]
gi|170939354|emb|CAP64582.1| unnamed protein product [Podospora anserina S mat+]
Length = 719
Score = 68.2 bits (165), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 47/141 (33%), Positives = 76/141 (53%), Gaps = 10/141 (7%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILL----RHMTFSEARKLPVQEFHLE 116
AP EA+AQ + + G + +ED D L FG+ LL +H E R+ ++F L
Sbjct: 147 APYEADAQLVYLEREGVISGIVSEDSDMLVFGAQRLLTKMDQHGQCVEIRR---KDFCLV 203
Query: 117 KVLEGMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTK-KYT 175
+ + + EF + IL GCDY ++ IG K A LI++H++ E+I++ + + K+
Sbjct: 204 REISLTGWTDAEFRHMAILSGCDYLGAVNNIGLKTAYRLIRKHKTPERIIQMLKFEGKHR 263
Query: 176 VPEGWL--YKEARELFRHPEV 194
VPE +L +K+A F H V
Sbjct: 264 VPENYLEEFKQAELTFLHQRV 284
Score = 48.5 bits (114), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 47/78 (60%), Gaps = 3/78 (3%)
Query: 232 FIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTK-KYTVPEGWL--YKEA 288
F + IL GCDY ++ IG K A LI++H++ E+I++ + + K+ VPE +L +K+A
Sbjct: 216 FRHMAILSGCDYLGAVNNIGLKTAYRLIRKHKTPERIIQMLKFEGKHRVPENYLEEFKQA 275
Query: 289 RELFRHPEIADPETIELV 306
F H + P+ ++V
Sbjct: 276 ELTFLHQRVFCPKKKDIV 293
>gi|119590509|gb|EAW70103.1| exonuclease 1, isoform CRA_a [Homo sapiens]
gi|119590511|gb|EAW70105.1| exonuclease 1, isoform CRA_a [Homo sapiens]
Length = 846
Score = 68.2 bits (165), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 52/153 (33%), Positives = 79/153 (51%), Gaps = 9/153 (5%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFG-SNILLRHMTFSEARKLPVQEFHLEKVL 119
AP EA+AQ A + KAG V A TED D L FG ++L+ F ++ + + L
Sbjct: 147 APYEADAQLAYLNKAGIVQAIITEDSDLLAFGCKKVILKMDQFGNGLEIDQARLGMCRQL 206
Query: 120 EGMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIK--EHRSIEKILENID---TKKY 174
G + E+F +CIL GCDY S+RGIG +A ++++ + I K+++ I
Sbjct: 207 -GDVFTEEKFRYMCILSGCDYLSSLRGIGLAKACKVLRLANNPDIVKVIKKIGHYLKMNI 265
Query: 175 TVPEGWL--YKEARELFRHPEVADPETIEFIDL 205
TVPE ++ + A F + V DP + I L
Sbjct: 266 TVPEDYINGFIRANNTFLYQLVFDPIKRKLIPL 298
Score = 40.0 bits (92), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 48/93 (51%), Gaps = 13/93 (13%)
Query: 235 LCILLGCDYCDSIRGIGPKRAIELIK--EHRSIEKILENID---TKKYTVPEGWL--YKE 287
+CIL GCDY S+RGIG +A ++++ + I K+++ I TVPE ++ +
Sbjct: 218 MCILSGCDYLSSLRGIGLAKACKVLRLANNPDIVKVIKKIGHYLKMNITVPEDYINGFIR 277
Query: 288 ARELFRHPEIADPETIELVA------DVAPSSI 314
A F + + DP +L+ DV P ++
Sbjct: 278 ANNTFLYQLVFDPIKRKLIPLNAYEDDVDPETL 310
>gi|380472104|emb|CCF46946.1| DNA-repair protein rad13, partial [Colletotrichum higginsianum]
Length = 794
Score = 68.2 bits (165), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 38/90 (42%), Positives = 55/90 (61%), Gaps = 11/90 (12%)
Query: 318 RKICIDASMSLYQFLIAVRS-EGNQLMSVDGEPTSHLMGTFYRTIRLVEHGLKPIYVFDG 376
+++ +DAS+ +YQFL AVR EGN L + SH++G F R +L+ G+KP++VFDG
Sbjct: 25 KRLAVDASIWIYQFLKAVRDKEGNALRN------SHVVGFFRRICKLLWFGIKPVFVFDG 78
Query: 377 KPPTLK----SGELNKRMEKREDAQKALAK 402
PTLK G +R +REDA + K
Sbjct: 79 GAPTLKRQTIQGRKQRREGRREDAVRTAGK 108
>gi|3822433|gb|AAC69879.1| exonuclease Ib [Homo sapiens]
gi|23664448|gb|AAN39382.1| exonuclease 1 [Homo sapiens]
Length = 846
Score = 68.2 bits (165), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 52/153 (33%), Positives = 79/153 (51%), Gaps = 9/153 (5%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFG-SNILLRHMTFSEARKLPVQEFHLEKVL 119
AP EA+AQ A + KAG V A TED D L FG ++L+ F ++ + + L
Sbjct: 147 APYEADAQLAYLNKAGIVQAIITEDSDLLAFGCKKVILKMDQFGNGLEIDQARLGMCRQL 206
Query: 120 EGMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIK--EHRSIEKILENID---TKKY 174
G + E+F +CIL GCDY S+RGIG +A ++++ + I K+++ I
Sbjct: 207 -GDVFTEEKFRYMCILSGCDYLSSLRGIGLAKACKVLRLANNPDIVKVIKKIGHYLKMNI 265
Query: 175 TVPEGWL--YKEARELFRHPEVADPETIEFIDL 205
TVPE ++ + A F + V DP + I L
Sbjct: 266 TVPEDYINGFIRANNTFLYQLVFDPIKRKLIPL 298
Score = 40.0 bits (92), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 48/93 (51%), Gaps = 13/93 (13%)
Query: 235 LCILLGCDYCDSIRGIGPKRAIELIK--EHRSIEKILENID---TKKYTVPEGWL--YKE 287
+CIL GCDY S+RGIG +A ++++ + I K+++ I TVPE ++ +
Sbjct: 218 MCILSGCDYLSSLRGIGLAKACKVLRLANNPDIVKVIKKIGHYLKMNITVPEDYINGFIR 277
Query: 288 ARELFRHPEIADPETIELVA------DVAPSSI 314
A F + + DP +L+ DV P ++
Sbjct: 278 ANNTFLYQLVFDPIKRKLIPLNAYEDDVDPETL 310
>gi|431891721|gb|ELK02292.1| Exonuclease 1 [Pteropus alecto]
Length = 816
Score = 68.2 bits (165), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 52/153 (33%), Positives = 80/153 (52%), Gaps = 9/153 (5%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFG-SNILLRHMTFSEARKLPVQEFHLEKVL 119
AP EA+AQ A + KAG V A TED D L FG ++L+ F ++ + + L
Sbjct: 147 APYEADAQLAYLNKAGIVQAIITEDSDLLAFGCKKVILKMDQFGNGLEIDQARLGMCRQL 206
Query: 120 EGMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIK--EHRSIEKILENID---TKKY 174
G + E+F +CIL GCDY S+RGIG +A ++++ + I K+++ I
Sbjct: 207 -GDVFTEEKFRYMCILSGCDYLSSLRGIGLAKACKVLRLANNPDIVKVIKKIGHYLRMNI 265
Query: 175 TVPEGWL--YKEARELFRHPEVADPETIEFIDL 205
TVPE ++ + +A F + V DP + I L
Sbjct: 266 TVPEDYIKGFIQANNTFLYQLVFDPIRRKLIPL 298
Score = 42.0 bits (97), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 31/107 (28%), Positives = 58/107 (54%), Gaps = 14/107 (13%)
Query: 235 LCILLGCDYCDSIRGIGPKRAIELIK--EHRSIEKILENID---TKKYTVPEGWL--YKE 287
+CIL GCDY S+RGIG +A ++++ + I K+++ I TVPE ++ + +
Sbjct: 218 MCILSGCDYLSSLRGIGLAKACKVLRLANNPDIVKVIKKIGHYLRMNITVPEDYIKGFIQ 277
Query: 288 ARELFRHPEIADPETIELV------ADVAPSSIRESRKICIDASMSL 328
A F + + DP +L+ AD+ P ++ + + +D S++L
Sbjct: 278 ANNTFLYQLVFDPIRRKLIPLNAYEADIDPETLSYAGRY-VDDSIAL 323
>gi|401625605|gb|EJS43605.1| rad2p [Saccharomyces arboricola H-6]
Length = 1034
Score = 68.2 bits (165), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 38/105 (36%), Positives = 60/105 (57%), Gaps = 3/105 (2%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVLE 120
AP EAEAQCA +++ V T+D D FG + ++M F E K V+ + E +L+
Sbjct: 792 APMEAEAQCAELLQLKLVDGIITDDSDVFLFGGTKVYKNM-FHE--KNYVEFYDAESILK 848
Query: 121 GMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKI 165
+ L + I+L LLG DY + ++G+GP +IE+I E S++
Sbjct: 849 LLGLDRKNMIELAQLLGSDYTNGLKGMGPVSSIEVIAEFGSLKNF 893
Score = 63.2 bits (152), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 35/91 (38%), Positives = 55/91 (60%), Gaps = 10/91 (10%)
Query: 316 ESRKICIDASMSLYQFLIAVRS-EGNQLMSVDGEPTSHLMGTFYRTIRLVEHGLKPIYVF 374
E +++ +DAS+ +YQFL AVR EGN + + SH+ G F R +L+ G++P++VF
Sbjct: 23 EDKRMAVDASIWIYQFLKAVRDQEGNAVKN------SHITGFFRRICKLLYFGIRPVFVF 76
Query: 375 DGKPPTLKSGELNKRMEKRE---DAQKALAK 402
DG P LK + +R E R+ D K+ A+
Sbjct: 77 DGGVPVLKRETIRQRKETRQGKRDNAKSTAR 107
>gi|371943829|gb|AEX61657.1| putative endonuclease of the XPG family [Megavirus courdo7]
gi|425701402|gb|AFX92564.1| putative endonuclease of the xpg family [Megavirus courdo11]
Length = 184
Score = 68.2 bits (165), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 53/80 (66%)
Query: 319 KICIDASMSLYQFLIAVRSEGNQLMSVDGEPTSHLMGTFYRTIRLVEHGLKPIYVFDGKP 378
++ +D S+ ++Q +IA+RS G + + GE TSHL G Y+ + +++G+ PI VFDGK
Sbjct: 30 RVAVDMSLLIHQTVIAMRSNGRDMTNQKGELTSHLYGILYKMLTFLQNGMTPICVFDGKA 89
Query: 379 PTLKSGELNKRMEKREDAQK 398
P +K+ ++ R +++ A+K
Sbjct: 90 PEIKNKTVDIRRSRKDAAEK 109
>gi|13960099|gb|AAH07491.1| Exonuclease 1 [Homo sapiens]
gi|123991816|gb|ABM83958.1| exonuclease 1 [synthetic construct]
gi|157928518|gb|ABW03555.1| exonuclease 1 [synthetic construct]
gi|307684586|dbj|BAJ20333.1| exonuclease 1 [synthetic construct]
Length = 846
Score = 68.2 bits (165), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 52/153 (33%), Positives = 79/153 (51%), Gaps = 9/153 (5%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFG-SNILLRHMTFSEARKLPVQEFHLEKVL 119
AP EA+AQ A + KAG V A TED D L FG ++L+ F ++ + + L
Sbjct: 147 APYEADAQLAYLNKAGIVQAIITEDSDLLAFGCKKVILKMDQFGNGLEIDQARLGMCRQL 206
Query: 120 EGMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIK--EHRSIEKILENID---TKKY 174
G + E+F +CIL GCDY S+RGIG +A ++++ + I K+++ I
Sbjct: 207 -GDVFTEEKFRYMCILSGCDYLSSLRGIGLAKACKVLRLANNPDIVKVIKKIGHYLKMNI 265
Query: 175 TVPEGWL--YKEARELFRHPEVADPETIEFIDL 205
TVPE ++ + A F + V DP + I L
Sbjct: 266 TVPEDYINGFIRANNTFLYQLVFDPIKRKLIPL 298
Score = 40.0 bits (92), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 48/93 (51%), Gaps = 13/93 (13%)
Query: 235 LCILLGCDYCDSIRGIGPKRAIELIK--EHRSIEKILENID---TKKYTVPEGWL--YKE 287
+CIL GCDY S+RGIG +A ++++ + I K+++ I TVPE ++ +
Sbjct: 218 MCILSGCDYLSSLRGIGLAKACKVLRLANNPDIVKVIKKIGHYLKMNITVPEDYINGFIR 277
Query: 288 ARELFRHPEIADPETIELVA------DVAPSSI 314
A F + + DP +L+ DV P ++
Sbjct: 278 ANNTFLYQLVFDPIKRKLIPLNAYEDDVDPETL 310
>gi|300706556|ref|XP_002995534.1| hypothetical protein NCER_101536 [Nosema ceranae BRL01]
gi|239604679|gb|EEQ81863.1| hypothetical protein NCER_101536 [Nosema ceranae BRL01]
Length = 563
Score = 68.2 bits (165), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 44/128 (34%), Positives = 65/128 (50%), Gaps = 16/128 (12%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVLE 120
+P E++AQCA++ K+G V TED D L G + + F K + ++ +K+ E
Sbjct: 409 SPSESDAQCASLCKSGVVDGVITEDSDILLHGG---VVYKNFFRKNKY-ITKYDPKKIYE 464
Query: 121 GMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKY------ 174
M LS + I L +LG DY I+GIG K+A+E IK +N+D K Y
Sbjct: 465 VMGLSLNDLISLGYILGSDYTVGIKGIGIKKAVEYIKSED-----FKNLDIKNYYNIYLQ 519
Query: 175 -TVPEGWL 181
V E W+
Sbjct: 520 CPVREDWI 527
Score = 39.3 bits (90), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 27/38 (71%)
Query: 359 RTIRLVEHGLKPIYVFDGKPPTLKSGELNKRMEKREDA 396
+ I+L+ H +KP+++FDG P LK L++R +++ DA
Sbjct: 50 KIIKLLYHNIKPVFIFDGPPNPLKKKVLDERKKEKIDA 87
>gi|238579680|ref|XP_002389137.1| hypothetical protein MPER_11778 [Moniliophthora perniciosa FA553]
gi|215451076|gb|EEB90067.1| hypothetical protein MPER_11778 [Moniliophthora perniciosa FA553]
Length = 391
Score = 68.2 bits (165), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 58/209 (27%), Positives = 85/209 (40%), Gaps = 45/209 (21%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVLE 120
AP EAEAQCA +V G V T+D D FG + ++M F++++ V+ F L +
Sbjct: 13 APMEAEAQCAVLVSLGLVDGIITDDSDVFVFGGQRVYKNM-FNQSKT--VECFLLSDLSR 69
Query: 121 GMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRS------------------- 161
+ L I L LLG DY + + G+GP A+EL+KE
Sbjct: 70 ELGLDQGTLIRLAYLLGSDYVEGLPGVGPVVAMELLKEFPGEDGLHKFKDWWTKVQTGRD 129
Query: 162 ---------IEKILENID-TKKYTVPEGWLYKEARELFRHPEVADPETIEFIDLCILLGC 211
K L + D TK +P W R+ + HP T++ D G
Sbjct: 130 KEDHIAWLWTHKYLSSEDKTKDLYLPPEWPNSAVRDAYYHP------TVDESDEPFKWGL 183
Query: 212 DYCDSIR-------GIGPKRAIELLYSFI 233
D++R G G + +LL I
Sbjct: 184 PDLDALREFLREELGWGQSKVDDLLLPII 212
>gi|403288380|ref|XP_003935384.1| PREDICTED: exonuclease 1 [Saimiri boliviensis boliviensis]
Length = 847
Score = 68.2 bits (165), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 52/153 (33%), Positives = 79/153 (51%), Gaps = 9/153 (5%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFG-SNILLRHMTFSEARKLPVQEFHLEKVL 119
AP EA+AQ A + KAG V A TED D L FG ++L+ F ++ + + L
Sbjct: 147 APYEADAQLAYLNKAGIVQAIITEDSDLLAFGCKKVILKMDQFGNGLEVDQARLGMCRQL 206
Query: 120 EGMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIK--EHRSIEKILENID---TKKY 174
G + E+F +CIL GCDY S+RGIG +A +++K + I K+++ I
Sbjct: 207 -GDVFTEEKFRYMCILSGCDYLSSLRGIGLAKACKVLKLANNPDIVKVIKKIGHYLKMNI 265
Query: 175 TVPEGWL--YKEARELFRHPEVADPETIEFIDL 205
TVPE ++ + A F + V DP + + L
Sbjct: 266 TVPEDYIKGFIRANNTFLYQLVFDPIKRKLVPL 298
Score = 41.6 bits (96), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 30/93 (32%), Positives = 48/93 (51%), Gaps = 13/93 (13%)
Query: 235 LCILLGCDYCDSIRGIGPKRAIELIK--EHRSIEKILENID---TKKYTVPEGWL--YKE 287
+CIL GCDY S+RGIG +A +++K + I K+++ I TVPE ++ +
Sbjct: 218 MCILSGCDYLSSLRGIGLAKACKVLKLANNPDIVKVIKKIGHYLKMNITVPEDYIKGFIR 277
Query: 288 ARELFRHPEIADPETIELVA------DVAPSSI 314
A F + + DP +LV DV P ++
Sbjct: 278 ANNTFLYQLVFDPIKRKLVPLNAYEDDVDPETL 310
>gi|31560511|ref|NP_036142.2| exonuclease 1 [Mus musculus]
gi|85700955|sp|Q9QZ11.2|EXO1_MOUSE RecName: Full=Exonuclease 1; Short=mExo1; AltName: Full=Exonuclease
I
gi|13879382|gb|AAH06671.1| Exonuclease 1 [Mus musculus]
gi|26324664|dbj|BAC26086.1| unnamed protein product [Mus musculus]
gi|148681255|gb|EDL13202.1| exonuclease 1 [Mus musculus]
Length = 837
Score = 68.2 bits (165), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 52/153 (33%), Positives = 79/153 (51%), Gaps = 9/153 (5%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFG-SNILLRHMTFSEARKLPVQEFHLEKVL 119
AP EA+AQ A + KAG V A TED D L FG ++L+ F ++ + K L
Sbjct: 147 APYEADAQLAYLNKAGIVQAVITEDSDLLAFGCKKVILKMDQFGNGLEVDQARLGMCKQL 206
Query: 120 EGMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIK--EHRSIEKILENID---TKKY 174
G + E+F +CIL GCDY S+RGIG +A ++++ + I K+++ I
Sbjct: 207 -GDVFTEEKFRYMCILSGCDYLASLRGIGLAKACKVLRLANNPDIVKVIKKIGHYLRMNI 265
Query: 175 TVPEGWL--YKEARELFRHPEVADPETIEFIDL 205
TVPE ++ + A F + V DP + + L
Sbjct: 266 TVPEDYITGFIRANNTFLYQLVFDPIQRKLVPL 298
Score = 40.4 bits (93), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 48/93 (51%), Gaps = 13/93 (13%)
Query: 235 LCILLGCDYCDSIRGIGPKRAIELIK--EHRSIEKILENID---TKKYTVPEGWL--YKE 287
+CIL GCDY S+RGIG +A ++++ + I K+++ I TVPE ++ +
Sbjct: 218 MCILSGCDYLASLRGIGLAKACKVLRLANNPDIVKVIKKIGHYLRMNITVPEDYITGFIR 277
Query: 288 ARELFRHPEIADPETIELVA------DVAPSSI 314
A F + + DP +LV DV P ++
Sbjct: 278 ANNTFLYQLVFDPIQRKLVPLNAYGDDVNPETL 310
>gi|367016309|ref|XP_003682653.1| hypothetical protein TDEL_0G00750 [Torulaspora delbrueckii]
gi|359750316|emb|CCE93442.1| hypothetical protein TDEL_0G00750 [Torulaspora delbrueckii]
Length = 1012
Score = 68.2 bits (165), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 34/80 (42%), Positives = 52/80 (65%), Gaps = 7/80 (8%)
Query: 316 ESRKICIDASMSLYQFLIAVRS-EGNQLMSVDGEPTSHLMGTFYRTIRLVEHGLKPIYVF 374
+ R++ +DAS+ +YQFL AVR EGN L + SH++G F R +L+ G+KP++VF
Sbjct: 23 QDRRMAVDASIWIYQFLKAVRDQEGNALKN------SHIVGFFRRICKLLYFGIKPVFVF 76
Query: 375 DGKPPTLKSGELNKRMEKRE 394
DG P LK + +R E+R+
Sbjct: 77 DGGVPALKRSTIQQRKERRQ 96
Score = 63.2 bits (152), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 39/118 (33%), Positives = 64/118 (54%), Gaps = 8/118 (6%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVLE 120
AP EAEAQCA ++ V T+D D FG + + ++M F E K V+ + + + +
Sbjct: 770 APMEAEAQCAELLGLKLVDGIITDDSDVFLFGGSRVYKNM-FHE--KNYVEFYDYQSIKQ 826
Query: 121 GMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILE-----NIDTKK 173
+ L + I+L LLG DY + I+G+GP ++E++ E ++ K + DTKK
Sbjct: 827 NLGLDRDTMIELAQLLGSDYTNGIKGMGPVSSMEVLAEFGNLIKFRDWYNEGQFDTKK 884
>gi|390600384|gb|EIN09779.1| PIN domain-like protein [Punctularia strigosozonata HHB-11173 SS5]
Length = 1103
Score = 68.2 bits (165), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 38/98 (38%), Positives = 57/98 (58%), Gaps = 3/98 (3%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVLE 120
AP EAEAQCA + + G V T+D D FG +L++M F++++ V+ F L +
Sbjct: 745 APMEAEAQCATLNELGLVDGIITDDSDVFLFGGKRVLKNM-FNQSKT--VECFLLPDLAR 801
Query: 121 GMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKE 158
+ L + I L LLG DY + + G+GP A+EL+KE
Sbjct: 802 ELGLDRDTLIRLAYLLGSDYTEGLPGVGPVVAMELLKE 839
Score = 55.8 bits (133), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 48/82 (58%), Gaps = 7/82 (8%)
Query: 316 ESRKICIDASMSLYQFLIAVRS-EGNQLMSVDGEPTSHLMGTFYRTIRLVEHGLKPIYVF 374
E + + ID+S+ +YQF +R EG L++ +H++G R +L+ +G+KP++VF
Sbjct: 23 EGKAMAIDSSIWIYQFQATMRDKEGRGLVN------AHVVGFLRRICKLMYYGIKPVFVF 76
Query: 375 DGKPPTLKSGELNKRMEKREDA 396
DG P LK L +R K+ A
Sbjct: 77 DGGAPALKRSTLTERKNKKNGA 98
>gi|284055278|ref|NP_006018.4| exonuclease 1 isoform b [Homo sapiens]
gi|284172361|ref|NP_569082.2| exonuclease 1 isoform b [Homo sapiens]
gi|85700954|sp|Q9UQ84.2|EXO1_HUMAN RecName: Full=Exonuclease 1; Short=hExo1; AltName: Full=Exonuclease
I; Short=hExoI
Length = 846
Score = 68.2 bits (165), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 52/153 (33%), Positives = 79/153 (51%), Gaps = 9/153 (5%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFG-SNILLRHMTFSEARKLPVQEFHLEKVL 119
AP EA+AQ A + KAG V A TED D L FG ++L+ F ++ + + L
Sbjct: 147 APYEADAQLAYLNKAGIVQAIITEDSDLLAFGCKKVILKMDQFGNGLEIDQARLGMCRQL 206
Query: 120 EGMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIK--EHRSIEKILENID---TKKY 174
G + E+F +CIL GCDY S+RGIG +A ++++ + I K+++ I
Sbjct: 207 -GDVFTEEKFRYMCILSGCDYLSSLRGIGLAKACKVLRLANNPDIVKVIKKIGHYLKMNI 265
Query: 175 TVPEGWL--YKEARELFRHPEVADPETIEFIDL 205
TVPE ++ + A F + V DP + I L
Sbjct: 266 TVPEDYINGFIRANNTFLYQLVFDPIKRKLIPL 298
Score = 40.0 bits (92), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 48/93 (51%), Gaps = 13/93 (13%)
Query: 235 LCILLGCDYCDSIRGIGPKRAIELIK--EHRSIEKILENID---TKKYTVPEGWL--YKE 287
+CIL GCDY S+RGIG +A ++++ + I K+++ I TVPE ++ +
Sbjct: 218 MCILSGCDYLSSLRGIGLAKACKVLRLANNPDIVKVIKKIGHYLKMNITVPEDYINGFIR 277
Query: 288 ARELFRHPEIADPETIELVA------DVAPSSI 314
A F + + DP +L+ DV P ++
Sbjct: 278 ANNTFLYQLVFDPIKRKLIPLNAYEDDVDPETL 310
>gi|5689874|emb|CAB51863.1| exonuclease 1 homologue [Mus musculus]
Length = 837
Score = 68.2 bits (165), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 52/153 (33%), Positives = 79/153 (51%), Gaps = 9/153 (5%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFG-SNILLRHMTFSEARKLPVQEFHLEKVL 119
AP EA+AQ A + KAG V A TED D L FG ++L+ F ++ + K L
Sbjct: 147 APYEADAQLAYLNKAGIVQAVITEDSDLLAFGCKKVILKMDQFGNGLEVDQARLGMCKQL 206
Query: 120 EGMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIK--EHRSIEKILENID---TKKY 174
G + E+F +CIL GCDY S+RGIG +A ++++ + I K+++ I
Sbjct: 207 -GDVFTEEKFRYMCILSGCDYLASLRGIGLAKACKVLRLANNPDIVKVIKKIGHYLRMNI 265
Query: 175 TVPEGWL--YKEARELFRHPEVADPETIEFIDL 205
TVPE ++ + A F + V DP + + L
Sbjct: 266 TVPEDYITGFIRANNTFLYQLVFDPIQRKLVPL 298
Score = 40.4 bits (93), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 48/93 (51%), Gaps = 13/93 (13%)
Query: 235 LCILLGCDYCDSIRGIGPKRAIELIK--EHRSIEKILENID---TKKYTVPEGWL--YKE 287
+CIL GCDY S+RGIG +A ++++ + I K+++ I TVPE ++ +
Sbjct: 218 MCILSGCDYLASLRGIGLAKACKVLRLANNPDIVKVIKKIGHYLRMNITVPEDYITGFIR 277
Query: 288 ARELFRHPEIADPETIELVA------DVAPSSI 314
A F + + DP +LV DV P ++
Sbjct: 278 ANNTFLYQLVFDPIQRKLVPLNAYGDDVNPETL 310
>gi|207344901|gb|EDZ71889.1| YGR258Cp-like protein [Saccharomyces cerevisiae AWRI1631]
Length = 1031
Score = 68.2 bits (165), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 37/98 (37%), Positives = 57/98 (58%), Gaps = 3/98 (3%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVLE 120
AP EAEAQCA +++ V T+D D FG + ++M F E K V+ + E +L+
Sbjct: 789 APMEAEAQCAELLQLNLVDGIITDDSDVFLFGGTKIYKNM-FHE--KNYVEFYDAESILK 845
Query: 121 GMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKE 158
+ L + I+L LLG DY + ++G+GP +IE+I E
Sbjct: 846 LLGLDRKNMIELAQLLGSDYTNGLKGMGPVSSIEVIAE 883
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 32/80 (40%), Positives = 51/80 (63%), Gaps = 7/80 (8%)
Query: 316 ESRKICIDASMSLYQFLIAVRS-EGNQLMSVDGEPTSHLMGTFYRTIRLVEHGLKPIYVF 374
E +++ +DAS+ +YQFL AVR EGN + + SH+ G F R +L+ G++P++VF
Sbjct: 23 EDKRMAVDASIWIYQFLKAVRDQEGNAVKN------SHITGFFRRICKLLYFGIRPVFVF 76
Query: 375 DGKPPTLKSGELNKRMEKRE 394
DG P LK + +R E+R+
Sbjct: 77 DGGVPVLKRETIRQRKERRQ 96
>gi|168002170|ref|XP_001753787.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162695194|gb|EDQ81539.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 314
Score = 68.2 bits (165), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 42/165 (25%), Positives = 80/165 (48%), Gaps = 4/165 (2%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFG-SNILLRHMTFSEARKLPVQEFHLEKVL 119
AP EA+AQ A + + G V TED D + +G I + + + + K +
Sbjct: 147 APYEADAQMAFLARNGHVDLVITEDSDLIAYGCPQIFFKMDKYGQGVGFQFSDITANKDI 206
Query: 120 EGMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEG 179
+ S + +++CI+ GCDY S+ G+G K+A L+K ++ K+++++ + E
Sbjct: 207 DFNNFSRQMILEMCIMSGCDYLPSLPGMGVKKAHGLMKRFKTYIKVMKHLKFSGVLIDEQ 266
Query: 180 W--LYKEARELFRHPEVADPETIEFIDLCILLGCDYCDSIRGIGP 222
+ ++ A F+H V DP + L + G + + + +GP
Sbjct: 267 YEQGFRRAILTFQHHRVYDPAKRAMVHLTDVPG-ELVNDLHFLGP 310
Score = 43.1 bits (100), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 43/76 (56%), Gaps = 2/76 (2%)
Query: 233 IDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGW--LYKEARE 290
+++CI+ GCDY S+ G+G K+A L+K ++ K+++++ + E + ++ A
Sbjct: 217 LEMCIMSGCDYLPSLPGMGVKKAHGLMKRFKTYIKVMKHLKFSGVLIDEQYEQGFRRAIL 276
Query: 291 LFRHPEIADPETIELV 306
F+H + DP +V
Sbjct: 277 TFQHHRVYDPAKRAMV 292
>gi|259146759|emb|CAY80016.1| Rad2p [Saccharomyces cerevisiae EC1118]
Length = 1031
Score = 68.2 bits (165), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 37/98 (37%), Positives = 57/98 (58%), Gaps = 3/98 (3%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVLE 120
AP EAEAQCA +++ V T+D D FG + ++M F E K V+ + E +L+
Sbjct: 789 APMEAEAQCAELLQLNLVDGIITDDSDVFLFGGTKIYKNM-FHE--KNYVEFYDAESILK 845
Query: 121 GMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKE 158
+ L + I+L LLG DY + ++G+GP +IE+I E
Sbjct: 846 LLGLDRKNMIELAQLLGSDYTNGLKGMGPVSSIEVIAE 883
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 32/80 (40%), Positives = 51/80 (63%), Gaps = 7/80 (8%)
Query: 316 ESRKICIDASMSLYQFLIAVRS-EGNQLMSVDGEPTSHLMGTFYRTIRLVEHGLKPIYVF 374
E +++ +DAS+ +YQFL AVR EGN + + SH+ G F R +L+ G++P++VF
Sbjct: 23 EDKRMAVDASIWIYQFLKAVRDQEGNAVKN------SHITGFFRRICKLLYFGIRPVFVF 76
Query: 375 DGKPPTLKSGELNKRMEKRE 394
DG P LK + +R E+R+
Sbjct: 77 DGGVPVLKRETIRQRKERRQ 96
>gi|51013165|gb|AAT92876.1| YGR258C [Saccharomyces cerevisiae]
Length = 1031
Score = 68.2 bits (165), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 37/98 (37%), Positives = 57/98 (58%), Gaps = 3/98 (3%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVLE 120
AP EAEAQCA +++ V T+D D FG + ++M F E K V+ + E +L+
Sbjct: 789 APMEAEAQCAELLQLNLVDGIITDDSDVFLFGGTKIYKNM-FHE--KNYVEFYDAESILK 845
Query: 121 GMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKE 158
+ L + I+L LLG DY + ++G+GP +IE+I E
Sbjct: 846 LLGLDRKNMIELAQLLGSDYTNGLKGMGPVSSIEVIAE 883
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 32/80 (40%), Positives = 51/80 (63%), Gaps = 7/80 (8%)
Query: 316 ESRKICIDASMSLYQFLIAVRS-EGNQLMSVDGEPTSHLMGTFYRTIRLVEHGLKPIYVF 374
E +++ +DAS+ +YQFL AVR EGN + + SH+ G F R +L+ G++P++VF
Sbjct: 23 EDKRMAVDASIWIYQFLKAVRDQEGNAVKN------SHITGFFRRICKLLYFGIRPVFVF 76
Query: 375 DGKPPTLKSGELNKRMEKRE 394
DG P LK + +R E+R+
Sbjct: 77 DGGVPVLKRETIRQRKERRQ 96
>gi|6321697|ref|NP_011774.1| Rad2p [Saccharomyces cerevisiae S288c]
gi|131811|sp|P07276.2|RAD2_YEAST RecName: Full=DNA repair protein RAD2
gi|172329|gb|AAA66928.1| RAD2 [Saccharomyces cerevisiae]
gi|1323470|emb|CAA97287.1| RAD2 [Saccharomyces cerevisiae]
gi|285812449|tpg|DAA08349.1| TPA: Rad2p [Saccharomyces cerevisiae S288c]
gi|392299514|gb|EIW10608.1| Rad2p [Saccharomyces cerevisiae CEN.PK113-7D]
Length = 1031
Score = 68.2 bits (165), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 37/98 (37%), Positives = 57/98 (58%), Gaps = 3/98 (3%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVLE 120
AP EAEAQCA +++ V T+D D FG + ++M F E K V+ + E +L+
Sbjct: 789 APMEAEAQCAELLQLNLVDGIITDDSDVFLFGGTKIYKNM-FHE--KNYVEFYDAESILK 845
Query: 121 GMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKE 158
+ L + I+L LLG DY + ++G+GP +IE+I E
Sbjct: 846 LLGLDRKNMIELAQLLGSDYTNGLKGMGPVSSIEVIAE 883
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 32/80 (40%), Positives = 51/80 (63%), Gaps = 7/80 (8%)
Query: 316 ESRKICIDASMSLYQFLIAVRS-EGNQLMSVDGEPTSHLMGTFYRTIRLVEHGLKPIYVF 374
E +++ +DAS+ +YQFL AVR EGN + + SH+ G F R +L+ G++P++VF
Sbjct: 23 EDKRMAVDASIWIYQFLKAVRDQEGNAVKN------SHITGFFRRICKLLYFGIRPVFVF 76
Query: 375 DGKPPTLKSGELNKRMEKRE 394
DG P LK + +R E+R+
Sbjct: 77 DGGVPVLKRETIRQRKERRQ 96
>gi|401828054|ref|XP_003888319.1| putative exonuclease [Encephalitozoon hellem ATCC 50504]
gi|392999591|gb|AFM99338.1| putative exonuclease [Encephalitozoon hellem ATCC 50504]
Length = 366
Score = 68.2 bits (165), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 49/142 (34%), Positives = 77/142 (54%), Gaps = 13/142 (9%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHM--TFSEARKLPVQEFHLEKV 118
+P E++AQ + + G + TED D + +GSN +L TF VQEF + +
Sbjct: 147 SPYESDAQLCYLQRIGYIDCILTEDSDLIPYGSNRILYKFDCTF-------VQEFTRDCL 199
Query: 119 LEGMELSHEE-FIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVP 177
E EE +D+ IL GCDY SI+GIG A +L+ +++E ++E + +K VP
Sbjct: 200 TEARGKDFEENILDISILSGCDYLASIQGIGVVTAHKLLSREKTVEGVIEYLRHRK-PVP 258
Query: 178 EGWL--YKEARELFRHPEVADP 197
G+L + +A++ F H V DP
Sbjct: 259 SGYLDDFLKAKKTFLHQVVYDP 280
Score = 50.1 bits (118), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 45/72 (62%), Gaps = 3/72 (4%)
Query: 231 SFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGWL--YKEA 288
+ +D+ IL GCDY SI+GIG A +L+ +++E ++E + +K VP G+L + +A
Sbjct: 210 NILDISILSGCDYLASIQGIGVVTAHKLLSREKTVEGVIEYLRHRK-PVPSGYLDDFLKA 268
Query: 289 RELFRHPEIADP 300
++ F H + DP
Sbjct: 269 KKTFLHQVVYDP 280
>gi|409048860|gb|EKM58338.1| hypothetical protein PHACADRAFT_193460 [Phanerochaete carnosa
HHB-10118-sp]
Length = 1225
Score = 68.2 bits (165), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 47/160 (29%), Positives = 74/160 (46%), Gaps = 29/160 (18%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVLE 120
AP EAEAQCA ++ G V T+D D FG +L++M F++++ V+ F L +
Sbjct: 859 APMEAEAQCAELLALGLVDGIITDDSDVFLFGGARVLKNM-FNQSKT--VECFLLSDLGR 915
Query: 121 GMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEH-------------RSIEKILE 167
+ L E+ I L LLG DY + + G+GP A+EL+ E R ++ +
Sbjct: 916 ELGLEREKLIRLAYLLGSDYTEGLPGVGPVVAMELLTEFSGSDGLHKFREWWRKVQSGRD 975
Query: 168 NIDTKKYT-------------VPEGWLYKEARELFRHPEV 194
++ K +PE W R+ + HP V
Sbjct: 976 TLEDNKSKFRKRFKKRFKELYLPEDWPNPTVRDAYYHPTV 1015
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 34/105 (32%), Positives = 58/105 (55%), Gaps = 7/105 (6%)
Query: 303 IELVADVAPSSIRESRKICIDASMSLYQFLIAVRS-EGNQLMSVDGEPTSHLMGTFYRTI 361
+E V P E + + ID+S+ +YQF +R EG L++ +H++G R
Sbjct: 10 LEPVGRPVPLETMEGKAMAIDSSIWIYQFQATMRDKEGRGLVN------AHVLGFLRRIS 63
Query: 362 RLVEHGLKPIYVFDGKPPTLKSGELNKRMEKREDAQKALAKAQEQ 406
+L+ +G+KP++VFDG P LK +++R K+ A + AK E+
Sbjct: 64 KLLFYGIKPVFVFDGGAPALKRTTISERKNKKSGAAASHAKVAER 108
>gi|349578461|dbj|GAA23627.1| K7_Rad2p [Saccharomyces cerevisiae Kyokai no. 7]
Length = 1031
Score = 68.2 bits (165), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 37/98 (37%), Positives = 57/98 (58%), Gaps = 3/98 (3%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVLE 120
AP EAEAQCA +++ V T+D D FG + ++M F E K V+ + E +L+
Sbjct: 789 APMEAEAQCAELLQLNLVDGIITDDSDVFLFGGTKIYKNM-FHE--KNYVEFYDAESILK 845
Query: 121 GMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKE 158
+ L + I+L LLG DY + ++G+GP +IE+I E
Sbjct: 846 LLGLDRKNMIELAQLLGSDYTNGLKGMGPVSSIEVIAE 883
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 32/80 (40%), Positives = 51/80 (63%), Gaps = 7/80 (8%)
Query: 316 ESRKICIDASMSLYQFLIAVRS-EGNQLMSVDGEPTSHLMGTFYRTIRLVEHGLKPIYVF 374
E +++ +DAS+ +YQFL AVR EGN + + SH+ G F R +L+ G++P++VF
Sbjct: 23 EDKRMAVDASIWIYQFLKAVRDQEGNAVKN------SHITGFFRRICKLLYFGIRPVFVF 76
Query: 375 DGKPPTLKSGELNKRMEKRE 394
DG P LK + +R E+R+
Sbjct: 77 DGGVPVLKRETIRQRKERRQ 96
>gi|151943533|gb|EDN61844.1| radiation sensitive protein [Saccharomyces cerevisiae YJM789]
Length = 1031
Score = 68.2 bits (165), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 37/98 (37%), Positives = 57/98 (58%), Gaps = 3/98 (3%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVLE 120
AP EAEAQCA +++ V T+D D FG + ++M F E K V+ + E +L+
Sbjct: 789 APMEAEAQCAELLQLNLVDGIITDDSDVFLFGGTKIYKNM-FHE--KNYVEFYDAESILK 845
Query: 121 GMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKE 158
+ L + I+L LLG DY + ++G+GP +IE+I E
Sbjct: 846 LLGLDRKNMIELAQLLGSDYTNGLKGMGPVSSIEVIAE 883
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 32/80 (40%), Positives = 51/80 (63%), Gaps = 7/80 (8%)
Query: 316 ESRKICIDASMSLYQFLIAVRS-EGNQLMSVDGEPTSHLMGTFYRTIRLVEHGLKPIYVF 374
E +++ +DAS+ +YQFL AVR EGN + + SH+ G F R +L+ G++P++VF
Sbjct: 23 EDKRMAVDASIWIYQFLKAVRDQEGNAVKN------SHITGFFRRICKLLYFGIRPVFVF 76
Query: 375 DGKPPTLKSGELNKRMEKRE 394
DG P LK + +R E+R+
Sbjct: 77 DGGVPVLKRETIRQRKERRQ 96
>gi|365765505|gb|EHN07013.1| Rad2p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
Length = 1031
Score = 68.2 bits (165), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 37/98 (37%), Positives = 57/98 (58%), Gaps = 3/98 (3%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVLE 120
AP EAEAQCA +++ V T+D D FG + ++M F E K V+ + E +L+
Sbjct: 789 APMEAEAQCAELLQLNLVDGIITDDSDVFLFGGTKIYKNM-FHE--KNYVEFYDAESILK 845
Query: 121 GMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKE 158
+ L + I+L LLG DY + ++G+GP +IE+I E
Sbjct: 846 LLGLDRKNMIELAQLLGSDYTNGLKGMGPVSSIEVIAE 883
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 32/80 (40%), Positives = 51/80 (63%), Gaps = 7/80 (8%)
Query: 316 ESRKICIDASMSLYQFLIAVRS-EGNQLMSVDGEPTSHLMGTFYRTIRLVEHGLKPIYVF 374
E +++ +DAS+ +YQFL AVR EGN + + SH+ G F R +L+ G++P++VF
Sbjct: 23 EDKRMAVDASIWIYQFLKAVRDQEGNAVKN------SHITGFFRRICKLLYFGIRPVFVF 76
Query: 375 DGKPPTLKSGELNKRMEKRE 394
DG P LK + +R E+R+
Sbjct: 77 DGGVPVLKRETIRQRKERRQ 96
>gi|348577145|ref|XP_003474345.1| PREDICTED: exonuclease 1-like [Cavia porcellus]
Length = 839
Score = 68.2 bits (165), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 51/153 (33%), Positives = 79/153 (51%), Gaps = 9/153 (5%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFG-SNILLRHMTFSEARKLPVQEFHLEKVL 119
AP EA+AQ A + KAG V A TED D L FG ++L+ F ++ + + L
Sbjct: 147 APYEADAQLAYLNKAGIVQAIITEDSDLLAFGCKKVILKMDQFGNGLEIDQTRLGMCRQL 206
Query: 120 EGMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIK--EHRSIEKILENID---TKKY 174
G + E+F +CIL GCDY S+RGIG +A ++++ + I K+++ I
Sbjct: 207 -GDVFTEEKFRYMCILSGCDYLSSLRGIGLAKACKVLRLANNPDIVKVIKKIGHYLKMNI 265
Query: 175 TVPEGWL--YKEARELFRHPEVADPETIEFIDL 205
TVPE ++ + A F + V DP + + L
Sbjct: 266 TVPEDYIKGFIRANNTFLYQLVFDPIKRKLVPL 298
Score = 40.8 bits (94), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 43/79 (54%), Gaps = 7/79 (8%)
Query: 235 LCILLGCDYCDSIRGIGPKRAIELIK--EHRSIEKILENID---TKKYTVPEGWL--YKE 287
+CIL GCDY S+RGIG +A ++++ + I K+++ I TVPE ++ +
Sbjct: 218 MCILSGCDYLSSLRGIGLAKACKVLRLANNPDIVKVIKKIGHYLKMNITVPEDYIKGFIR 277
Query: 288 ARELFRHPEIADPETIELV 306
A F + + DP +LV
Sbjct: 278 ANNTFLYQLVFDPIKRKLV 296
>gi|308799503|ref|XP_003074532.1| exonuclease, putative; 92014-93872 (ISS) [Ostreococcus tauri]
gi|116000703|emb|CAL50383.1| exonuclease, putative; 92014-93872 (ISS) [Ostreococcus tauri]
Length = 1004
Score = 68.2 bits (165), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 37/121 (30%), Positives = 67/121 (55%), Gaps = 1/121 (0%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTF-SEARKLPVQEFHLEKVL 119
AP EA+AQ A +VK G V A TED D + G + M+ ++ +E + +
Sbjct: 148 APYEADAQMAYLVKHGFVSAVITEDSDLIAHGCKSVFTKMSPDGSGIEIRFEELGKNRGM 207
Query: 120 EGMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEG 179
+ + + F+++C+L GCDY S+ G+G K+A LI+ ++ K+L ++ + +VP+
Sbjct: 208 SFVGFTPQMFLEMCVLSGCDYLPSLAGVGLKKAHSLIRRFKTYNKVLRHMKFEGISVPKD 267
Query: 180 W 180
+
Sbjct: 268 Y 268
>gi|347833577|emb|CCD49274.1| similar to DNA excision repair protein [Botryotinia fuckeliana]
Length = 1341
Score = 68.2 bits (165), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 42/111 (37%), Positives = 60/111 (54%), Gaps = 8/111 (7%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVLE 120
AP EAEAQCA +V+ G V T+D D FG + +++ S + E +L LE
Sbjct: 951 APMEAEAQCAELVRLGLVDGIVTDDSDIFLFGGTRVYKNLFNSNK----LVECYLSSDLE 1006
Query: 121 G-MELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKE---HRSIEKILE 167
+ LS E+ I + LLG DY + I GIGP A+E++ E H +E+ E
Sbjct: 1007 KELSLSREQLISIAHLLGSDYTEGIPGIGPVTAVEILSEFPSHAGLEEFKE 1057
Score = 64.7 bits (156), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 31/66 (46%), Positives = 45/66 (68%), Gaps = 7/66 (10%)
Query: 318 RKICIDASMSLYQFLIAVRS-EGNQLMSVDGEPTSHLMGTFYRTIRLVEHGLKPIYVFDG 376
+++ +DAS+ +YQFL AVR EGN L + SH++G F R +L+ HG+KP++VFDG
Sbjct: 25 KRLAVDASIWIYQFLKAVRDKEGNALRN------SHIVGFFRRICKLLFHGIKPVFVFDG 78
Query: 377 KPPTLK 382
P LK
Sbjct: 79 GAPILK 84
>gi|256272689|gb|EEU07666.1| Rad2p [Saccharomyces cerevisiae JAY291]
Length = 1031
Score = 68.2 bits (165), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 37/98 (37%), Positives = 57/98 (58%), Gaps = 3/98 (3%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVLE 120
AP EAEAQCA +++ V T+D D FG + ++M F E K V+ + E +L+
Sbjct: 789 APMEAEAQCAELLQLNLVDGIITDDSDVFLFGGTKIYKNM-FHE--KNYVEFYDAESILK 845
Query: 121 GMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKE 158
+ L + I+L LLG DY + ++G+GP +IE+I E
Sbjct: 846 LLGLDRKNMIELAQLLGSDYTNGLKGMGPVSSIEVIAE 883
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 32/80 (40%), Positives = 51/80 (63%), Gaps = 7/80 (8%)
Query: 316 ESRKICIDASMSLYQFLIAVRS-EGNQLMSVDGEPTSHLMGTFYRTIRLVEHGLKPIYVF 374
E +++ +DAS+ +YQFL AVR EGN + + SH+ G F R +L+ G++P++VF
Sbjct: 23 EDKRMAVDASIWIYQFLKAVRDQEGNAVKN------SHITGFFRRICKLLYFGIRPVFVF 76
Query: 375 DGKPPTLKSGELNKRMEKRE 394
DG P LK + +R E+R+
Sbjct: 77 DGGVPVLKRETIRQRKERRQ 96
>gi|449496989|ref|XP_002193244.2| PREDICTED: exonuclease 1 [Taeniopygia guttata]
Length = 805
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 60/195 (30%), Positives = 88/195 (45%), Gaps = 23/195 (11%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFG-SNILLRHMTFSEARKLPVQEFHLEKVL 119
AP EA+AQ A + K G V A TED D L FG + L+ F ++ K L
Sbjct: 147 APYEADAQLAYLNKTGMVQAIITEDSDLLAFGCKKVFLKIDKFGNGLEIDQTRLGNCKQL 206
Query: 120 EGMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIK--EHRSIEKILENID---TKKY 174
G + E+F +CIL GCDY SI GIG +A +L+K + I K+++ +
Sbjct: 207 -GNVFTEEKFRYMCILSGCDYLPSIHGIGLAKACKLLKLANNPDIIKVIKKMGQYLKMNI 265
Query: 175 TVPEGWL--YKEARELFRHPEVADPETIEFIDLCILLGCDYCDSI---------RGIGPK 223
TVPE ++ + A F + V DP + + L Y D I R +G
Sbjct: 266 TVPEEYIQGFTRANNTFLYQLVFDPVNRKLVPLNA-----YGDDIDPETLTYAGRHVGDD 320
Query: 224 RAIELLYSFIDLCIL 238
A ++ ID+ +
Sbjct: 321 TAFQIAVGNIDINTM 335
Score = 41.6 bits (96), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 42/79 (53%), Gaps = 7/79 (8%)
Query: 235 LCILLGCDYCDSIRGIGPKRAIELIK--EHRSIEKILENID---TKKYTVPEGWL--YKE 287
+CIL GCDY SI GIG +A +L+K + I K+++ + TVPE ++ +
Sbjct: 218 MCILSGCDYLPSIHGIGLAKACKLLKLANNPDIIKVIKKMGQYLKMNITVPEEYIQGFTR 277
Query: 288 ARELFRHPEIADPETIELV 306
A F + + DP +LV
Sbjct: 278 ANNTFLYQLVFDPVNRKLV 296
>gi|74151267|dbj|BAE38768.1| unnamed protein product [Mus musculus]
Length = 837
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 52/153 (33%), Positives = 79/153 (51%), Gaps = 9/153 (5%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFG-SNILLRHMTFSEARKLPVQEFHLEKVL 119
AP EA+AQ A + KAG V A TED D L FG ++L+ F ++ + K L
Sbjct: 147 APYEADAQLAYLNKAGIVQAVITEDSDLLAFGCKKVILKMDQFGNGLEVDQARLGMCKQL 206
Query: 120 EGMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIK--EHRSIEKILENID---TKKY 174
G + E+F +CIL GCDY S+RGIG +A ++++ + I K+++ I
Sbjct: 207 -GDVFTEEKFRYMCILSGCDYLASLRGIGLAKACKVLRLANNPDIVKVIKKIGHYLRMNI 265
Query: 175 TVPEGWL--YKEARELFRHPEVADPETIEFIDL 205
TVPE ++ + A F + V DP + + L
Sbjct: 266 TVPEDYITGFIRANNTFLYQLVFDPIQRKLVPL 298
Score = 40.4 bits (93), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 48/93 (51%), Gaps = 13/93 (13%)
Query: 235 LCILLGCDYCDSIRGIGPKRAIELIK--EHRSIEKILENID---TKKYTVPEGWL--YKE 287
+CIL GCDY S+RGIG +A ++++ + I K+++ I TVPE ++ +
Sbjct: 218 MCILSGCDYLASLRGIGLAKACKVLRLANNPDIVKVIKKIGHYLRMNITVPEDYITGFIR 277
Query: 288 ARELFRHPEIADPETIELVA------DVAPSSI 314
A F + + DP +LV DV P ++
Sbjct: 278 ANNTFLYQLVFDPIQRKLVPLNAYGDDVNPETL 310
>gi|403177167|ref|XP_003335732.2| hypothetical protein PGTG_17170 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
gi|375172758|gb|EFP91313.2| hypothetical protein PGTG_17170 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
Length = 1403
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 35/91 (38%), Positives = 59/91 (64%), Gaps = 7/91 (7%)
Query: 317 SRKICIDASMSLYQFLIAVRS-EGNQLMSVDGEPTSHLMGTFYRTIRLVEHGLKPIYVFD 375
S+K+ ID+S+ LYQF A+R EG +++ +H++G R +L+ +G+KP++VFD
Sbjct: 100 SKKLAIDSSIWLYQFQKAMRDREGKGIVN------AHILGFLRRISKLLYYGIKPVFVFD 153
Query: 376 GKPPTLKSGELNKRMEKREDAQKALAKAQEQ 406
G PTLK +N+R +++ Q+ LAK E+
Sbjct: 154 GGVPTLKKQTINERKKRKRGVQENLAKTAEK 184
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 57/98 (58%), Gaps = 3/98 (3%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVLE 120
+P EAEAQCA ++K G V T+D D FG + + +++ F++ + V+ + + + +
Sbjct: 974 SPMEAEAQCAELLKLGLVDGIITDDSDVFLFGGHRVYKNL-FNQNKF--VECYLMNDLDQ 1030
Query: 121 GMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKE 158
+ L ++ I L LLG DY + G+GP A+E++ E
Sbjct: 1031 ELGLDQQKLIQLAFLLGSDYTVGLNGVGPVTAMEILSE 1068
>gi|323354903|gb|EGA86736.1| Rad2p [Saccharomyces cerevisiae VL3]
Length = 998
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 37/98 (37%), Positives = 57/98 (58%), Gaps = 3/98 (3%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVLE 120
AP EAEAQCA +++ V T+D D FG + ++M F E K V+ + E +L+
Sbjct: 789 APMEAEAQCAELLQLNLVDGIITDDSDVFLFGGTKIYKNM-FHE--KNYVEFYDAESILK 845
Query: 121 GMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKE 158
+ L + I+L LLG DY + ++G+GP +IE+I E
Sbjct: 846 LLGLDRKNMIELAQLLGSDYTNGLKGMGPVSSIEVIAE 883
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 32/80 (40%), Positives = 51/80 (63%), Gaps = 7/80 (8%)
Query: 316 ESRKICIDASMSLYQFLIAVRS-EGNQLMSVDGEPTSHLMGTFYRTIRLVEHGLKPIYVF 374
E +++ +DAS+ +YQFL AVR EGN + + SH+ G F R +L+ G++P++VF
Sbjct: 23 EDKRMAVDASIWIYQFLKAVRDQEGNAVKN------SHITGFFRRICKLLYFGIRPVFVF 76
Query: 375 DGKPPTLKSGELNKRMEKRE 394
DG P LK + +R E+R+
Sbjct: 77 DGGVPVLKRETIRQRKERRQ 96
>gi|53791673|dbj|BAD53243.1| exonuclease-like protein [Oryza sativa Japonica Group]
Length = 783
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 49/153 (32%), Positives = 79/153 (51%), Gaps = 13/153 (8%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFG-SNILLRHMTFSEARKLPVQEFHLEKVL 119
AP EA+AQ + V A TED D + FG S I+ + F + EFH+ ++
Sbjct: 169 APYEADAQMTFLSVNKLVDAVITEDSDLIPFGCSRIIFKMDKFGQG-----VEFHITRLQ 223
Query: 120 EGMELSHEEF-----IDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKY 174
EL F +++CIL GCDY S+ G+G KRA LI++ + EK+++++
Sbjct: 224 RCRELDLNGFTMQMLLEMCILSGCDYLPSLPGMGVKRAHALIQKLKGHEKVIKHLRYSAV 283
Query: 175 TVPEGW--LYKEARELFRHPEVADPETIEFIDL 205
+VP + +++A F+ V DP T + + L
Sbjct: 284 SVPPQYEENFRKAIWAFQFQRVYDPVTEDIVHL 316
Score = 48.5 bits (114), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 47/77 (61%), Gaps = 2/77 (2%)
Query: 232 FIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGW--LYKEAR 289
+++CIL GCDY S+ G+G KRA LI++ + EK+++++ +VP + +++A
Sbjct: 238 LLEMCILSGCDYLPSLPGMGVKRAHALIQKLKGHEKVIKHLRYSAVSVPPQYEENFRKAI 297
Query: 290 ELFRHPEIADPETIELV 306
F+ + DP T ++V
Sbjct: 298 WAFQFQRVYDPVTEDIV 314
>gi|218189150|gb|EEC71577.1| hypothetical protein OsI_03950 [Oryza sativa Indica Group]
Length = 762
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 49/154 (31%), Positives = 79/154 (51%), Gaps = 13/154 (8%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFG-SNILLRHMTFSEARKLPVQEFHLEKVL 119
AP EA+AQ + V A TED D + FG S I+ + F + EFH+ ++
Sbjct: 147 APYEADAQMTFLSVNKLVDAVITEDSDLIPFGCSRIIFKMDKFGQG-----VEFHITRLQ 201
Query: 120 EGMELSHEEF-----IDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKY 174
EL F +++CIL GCDY S+ G+G KRA LI++ + EK+++++
Sbjct: 202 RCRELDLNGFTMQMLLEMCILSGCDYLPSLPGMGVKRAHALIQKLKGHEKVIKHLRYSAV 261
Query: 175 TVPEGW--LYKEARELFRHPEVADPETIEFIDLC 206
+VP + +++A F+ V DP T + + L
Sbjct: 262 SVPPQYEENFRKAIWAFQFHRVYDPVTEDIVHLS 295
Score = 48.5 bits (114), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 47/77 (61%), Gaps = 2/77 (2%)
Query: 232 FIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGW--LYKEAR 289
+++CIL GCDY S+ G+G KRA LI++ + EK+++++ +VP + +++A
Sbjct: 216 LLEMCILSGCDYLPSLPGMGVKRAHALIQKLKGHEKVIKHLRYSAVSVPPQYEENFRKAI 275
Query: 290 ELFRHPEIADPETIELV 306
F+ + DP T ++V
Sbjct: 276 WAFQFHRVYDPVTEDIV 292
>gi|222619346|gb|EEE55478.1| hypothetical protein OsJ_03659 [Oryza sativa Japonica Group]
Length = 762
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 49/153 (32%), Positives = 79/153 (51%), Gaps = 13/153 (8%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFG-SNILLRHMTFSEARKLPVQEFHLEKVL 119
AP EA+AQ + V A TED D + FG S I+ + F + EFH+ ++
Sbjct: 147 APYEADAQMTFLSVNKLVDAVITEDSDLIPFGCSRIIFKMDKFGQG-----VEFHITRLQ 201
Query: 120 EGMELSHEEF-----IDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKY 174
EL F +++CIL GCDY S+ G+G KRA LI++ + EK+++++
Sbjct: 202 RCRELDLNGFTMQMLLEMCILSGCDYLPSLPGMGVKRAHALIQKLKGHEKVIKHLRYSAV 261
Query: 175 TVPEGW--LYKEARELFRHPEVADPETIEFIDL 205
+VP + +++A F+ V DP T + + L
Sbjct: 262 SVPPQYEENFRKAIWAFQFQRVYDPVTEDIVHL 294
Score = 48.5 bits (114), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 47/77 (61%), Gaps = 2/77 (2%)
Query: 232 FIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGW--LYKEAR 289
+++CIL GCDY S+ G+G KRA LI++ + EK+++++ +VP + +++A
Sbjct: 216 LLEMCILSGCDYLPSLPGMGVKRAHALIQKLKGHEKVIKHLRYSAVSVPPQYEENFRKAI 275
Query: 290 ELFRHPEIADPETIELV 306
F+ + DP T ++V
Sbjct: 276 WAFQFQRVYDPVTEDIV 292
>gi|9719724|gb|AAF97826.1|AC034107_9 Contains similarity to exonuclease ExoI from Xenopus laevis
gb|AF134570 and contains XPG N-terminal PF|00752 and
I-region PF|00867 domains. EST gb|AV565414 comes from
this gene [Arabidopsis thaliana]
Length = 567
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 78/345 (22%), Positives = 143/345 (41%), Gaps = 64/345 (18%)
Query: 61 APCEAEAQCAAM----VKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLE 116
AP EA+AQ A + ++ G + A TED D L +G ++ F R +E L+
Sbjct: 140 APYEADAQLAYLSSLELEQGGIAAVITEDSDLLAYGCKAVI----FKMDRYGKGEELVLD 195
Query: 117 KVLEGME-------LSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENI 169
V + ++ E F +C+L GCD+ S+ G+G RA I +++S+E +L +
Sbjct: 196 NVFQAVDQKPSFQNFDQELFTAMCVLAGCDFLPSVPGVGISRAHAFISKYQSVELVLSFL 255
Query: 170 DTKK-YTVPEGW--LYKEARELFRHPEVAD----------PETIEFIDLCI----LLGCD 212
TKK VP+ + + EA +F+H V D P + ++L + LG D
Sbjct: 256 KTKKGKLVPDDYSSSFTEAVSVFQHARVYDFDAKKLKHLKPLSHNLLNLPVEQLEFLGPD 315
Query: 213 YCDSIRGIGPKRAIELLYSFIDLCILLGCDYCDSIRGI--GPKRAI-------------- 256
+ P A+ + +D + ++ R P R+
Sbjct: 316 -------LSPSVAVAIAEGNVDPITMKAFNHFSVSRKPLKTPVRSFKEQEKGSSFLVCSL 368
Query: 257 ----ELIKEHRSIEKILEN----IDTKKYTVPEGWLYKEARELFRHPEIADPETIELVAD 308
E+I+ R+ ++ + + + K Y+ + LYK + R + P L+ D
Sbjct: 369 SKSEEIIELKRTADEAMIDPEAIVKKKMYSKQDSDLYKLLAQPNRDQVVTRPSNPSLIPD 428
Query: 309 VAPSSIRESRKICID-ASMSLYQFLIAVRSEGNQLMSVDGEPTSH 352
P IR++ +I ++ A + + + ++ + P SH
Sbjct: 429 NNPFKIRKTDEINLEIAEYGVQELADSFVTKSKAVDVASSSPNSH 473
>gi|358387657|gb|EHK25251.1| hypothetical protein TRIVIDRAFT_208179 [Trichoderma virens Gv29-8]
Length = 1196
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 38/107 (35%), Positives = 53/107 (49%), Gaps = 21/107 (19%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVLE 120
AP EAEAQCA +V+ G V T+D D FG + ++M F+ K +E
Sbjct: 917 APMEAEAQCAELVRLGMVDGIVTDDSDTFLFGGTRVYKNM------------FNSNKFVE 964
Query: 121 ---------GMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKE 158
M LS E+ I L LLG DY + + G+GP A+E++ E
Sbjct: 965 CYVGADLDKEMSLSREQLISLAQLLGSDYTEGLPGVGPVTAVEILSE 1011
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 33/78 (42%), Positives = 51/78 (65%), Gaps = 7/78 (8%)
Query: 318 RKICIDASMSLYQFLIAVRS-EGNQLMSVDGEPTSHLMGTFYRTIRLVEHGLKPIYVFDG 376
+++ +DAS+ +YQFL AVR EGN L + SH++G F R +L+ G++P++VFDG
Sbjct: 25 KRLAVDASIWIYQFLKAVRDKEGNALRN------SHIVGFFRRICKLLWFGIQPVFVFDG 78
Query: 377 KPPTLKSGELNKRMEKRE 394
P LK + KR ++RE
Sbjct: 79 GAPALKRATIQKRKQRRE 96
>gi|336383338|gb|EGO24487.1| hypothetical protein SERLADRAFT_467880 [Serpula lacrymans var.
lacrymans S7.9]
Length = 413
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 38/98 (38%), Positives = 55/98 (56%), Gaps = 3/98 (3%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVLE 120
AP EAEAQCA +V G V T+D D FG + ++M F++++ V+ F L +
Sbjct: 29 APMEAEAQCAELVSLGLVDGIITDDSDVFLFGGQRVFKNM-FNQSKT--VECFLLSDLGR 85
Query: 121 GMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKE 158
+ L I L LLG DY + + G+GP A+EL+KE
Sbjct: 86 ELGLERGTLIRLAYLLGSDYVEGLSGVGPVVAMELLKE 123
>gi|297597717|ref|NP_001044421.2| Os01g0777300 [Oryza sativa Japonica Group]
gi|75114038|sp|Q60GC1.1|EXO1_ORYSJ RecName: Full=Exonuclease 1; AltName: Full=OsEXO-1
gi|54111120|dbj|BAD60834.1| exonuclease-1 [Oryza sativa Japonica Group]
gi|255673742|dbj|BAF06335.2| Os01g0777300 [Oryza sativa Japonica Group]
Length = 836
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 49/153 (32%), Positives = 79/153 (51%), Gaps = 13/153 (8%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFG-SNILLRHMTFSEARKLPVQEFHLEKVL 119
AP EA+AQ + V A TED D + FG S I+ + F + EFH+ ++
Sbjct: 147 APYEADAQMTFLSVNKLVDAVITEDSDLIPFGCSRIIFKMDKFGQG-----VEFHITRLQ 201
Query: 120 EGMELSHEEF-----IDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKY 174
EL F +++CIL GCDY S+ G+G KRA LI++ + EK+++++
Sbjct: 202 RCRELDLNGFTMQMLLEMCILSGCDYLPSLPGMGVKRAHALIQKLKGHEKVIKHLRYSAV 261
Query: 175 TVPEGW--LYKEARELFRHPEVADPETIEFIDL 205
+VP + +++A F+ V DP T + + L
Sbjct: 262 SVPPQYEENFRKAIWAFQFQRVYDPVTEDIVHL 294
Score = 48.1 bits (113), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 47/77 (61%), Gaps = 2/77 (2%)
Query: 232 FIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGW--LYKEAR 289
+++CIL GCDY S+ G+G KRA LI++ + EK+++++ +VP + +++A
Sbjct: 216 LLEMCILSGCDYLPSLPGMGVKRAHALIQKLKGHEKVIKHLRYSAVSVPPQYEENFRKAI 275
Query: 290 ELFRHPEIADPETIELV 306
F+ + DP T ++V
Sbjct: 276 WAFQFQRVYDPVTEDIV 292
>gi|15079080|ref|NP_149832.1| 369L [Invertebrate iridescent virus 6]
gi|82012056|sp|Q91FF5.1|VF369_IIV6 RecName: Full=Probable RAD2-like endonuclease 369L
gi|15042449|gb|AAK82229.1|AF303741_370 369L [Invertebrate iridescent virus 6]
Length = 415
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 41/123 (33%), Positives = 68/123 (55%), Gaps = 6/123 (4%)
Query: 60 KAPCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRH---MTFSEARKLP-VQEFHL 115
+AP EAEA CA + K ++ A+ D D L +G N+++ + E K+ + +
Sbjct: 194 QAPMEAEAFCAYLYKKKIIHGIASNDSDILAYGCNLIVDFEFDVKIDEETKISKITYINY 253
Query: 116 EKVLEGMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENID--TKK 173
+ +L ++L EF+D CI+ G DY D+I IG ++ ELIK + IE + + +D KK
Sbjct: 254 DYLLNKLDLQSSEFLDFCIMCGTDYNDNIYRIGAVKSYELIKVQKCIENVGKFLDPNNKK 313
Query: 174 YTV 176
T+
Sbjct: 314 GTI 316
Score = 38.5 bits (88), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 31/50 (62%), Gaps = 2/50 (4%)
Query: 232 FIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENID--TKKYTV 279
F+D CI+ G DY D+I IG ++ ELIK + IE + + +D KK T+
Sbjct: 267 FLDFCIMCGTDYNDNIYRIGAVKSYELIKVQKCIENVGKFLDPNNKKGTI 316
>gi|336364544|gb|EGN92901.1| hypothetical protein SERLA73DRAFT_190513 [Serpula lacrymans var.
lacrymans S7.3]
gi|336388587|gb|EGO29731.1| hypothetical protein SERLADRAFT_457914 [Serpula lacrymans var.
lacrymans S7.9]
Length = 629
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 37/107 (34%), Positives = 61/107 (57%), Gaps = 4/107 (3%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVLE 120
P EAEA +++V G A+ED D L + + L+R++ E + V + VL+
Sbjct: 446 GPFEAEALASSLVINGFADYVASEDTDVLVYEAP-LIRNIANREGPLIVVSGSDVRSVLQ 504
Query: 121 GMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILE 167
L +ID +LLG D+ I+ +GP+RA++ I+E+ SIE++LE
Sbjct: 505 ---LERSSYIDFALLLGTDFSQRIKNVGPQRALKFIREYGSIERVLE 548
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 48/81 (59%), Gaps = 4/81 (4%)
Query: 231 SFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGWLYKE--- 287
S+ID +LLG D+ I+ +GP+RA++ I+E+ SIE++LE +P ++
Sbjct: 509 SYIDFALLLGTDFSQRIKNVGPQRALKFIREYGSIERVLEQEIKYPPRMPLPIYLRQVEL 568
Query: 288 ARELFRH-PEIADPETIELVA 307
AR +F+ P + +P+ ++ A
Sbjct: 569 ARTVFQTLPPVPNPDLLQTAA 589
>gi|328877038|gb|EGG25401.1| 5'3'-exonuclease N- and I-domain-containing protein [Dictyostelium
fasciculatum]
Length = 994
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 50/157 (31%), Positives = 75/157 (47%), Gaps = 14/157 (8%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKV-- 118
AP EA+AQ A + +V A TED D + +G+ +L M ++ +E E +
Sbjct: 147 APYEADAQLAYLAVTNQVDAILTEDSDLIAYGTPTVLFKMN----KEGYCEEIKSENICS 202
Query: 119 --LEGMELSHEEFI---DLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKK 173
G++ + +CIL GCDY S+ G+G K + +L KE++ IEKI + + K
Sbjct: 203 CKSNGLDFGNFNLTMLRQMCILAGCDYLPSLHGMGIKTSYKLFKEYKEIEKIFKYLKGTK 262
Query: 174 YTVPE--GWLYKEARELFRHPEVADPETIEFIDLCIL 208
E G YK A FRH V DP + + L
Sbjct: 263 RLTEEYVGSFYK-ADLTFRHARVYDPVSKTMVHFSPL 298
Score = 52.8 bits (125), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 42/74 (56%), Gaps = 3/74 (4%)
Query: 235 LCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPE--GWLYKEARELF 292
+CIL GCDY S+ G+G K + +L KE++ IEKI + + K E G YK A F
Sbjct: 221 MCILAGCDYLPSLHGMGIKTSYKLFKEYKEIEKIFKYLKGTKRLTEEYVGSFYK-ADLTF 279
Query: 293 RHPEIADPETIELV 306
RH + DP + +V
Sbjct: 280 RHARVYDPVSKTMV 293
>gi|353238841|emb|CCA70774.1| related to RAD2-structure-specific nuclease of the nucleotide
excision repairosome [Piriformospora indica DSM 11827]
Length = 1153
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 37/104 (35%), Positives = 58/104 (55%), Gaps = 3/104 (2%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVLE 120
AP EAEAQCA ++ G V T+D D FG+ + ++M F++++ V+ F +
Sbjct: 797 APMEAEAQCAKLLSLGLVEGVITDDSDVFLFGATRVFKNM-FNQSKT--VECFLAADLQR 853
Query: 121 GMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEK 164
+ L E+ I L LLG DY D + G+GP A+E++ E + K
Sbjct: 854 ELGLDQEKLIRLAYLLGSDYVDGLEGVGPVVAMEILNEFETAGK 897
Score = 55.8 bits (133), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 53/92 (57%), Gaps = 7/92 (7%)
Query: 316 ESRKICIDASMSLYQFLIAVRS-EGNQLMSVDGEPTSHLMGTFYRTIRLVEHGLKPIYVF 374
E + + ID+S+ +YQF +R EG L++ +HL+G R +L+ +G+KP++VF
Sbjct: 23 EGKALAIDSSIWIYQFQATMRDKEGRGLVN------AHLLGFLRRICKLLFYGIKPVFVF 76
Query: 375 DGKPPTLKSGELNKRMEKREDAQKALAKAQEQ 406
DG P LK + +R ++ A + AK E+
Sbjct: 77 DGGAPALKRSTIVERKRRKAGAAISHAKVAER 108
>gi|322712027|gb|EFZ03600.1| XPG domain containing protein [Metarhizium anisopliae ARSEF 23]
Length = 1191
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 39/99 (39%), Positives = 58/99 (58%), Gaps = 5/99 (5%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVLE 120
AP EAEAQCA +VK G V T+D D FG + ++M F+ + + E ++ K LE
Sbjct: 895 APMEAEAQCAELVKLGIVDGIVTDDSDTFLFGGTRVYKNM-FNSNKFV---ECYIGKDLE 950
Query: 121 G-MELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKE 158
+ LS ++ I L LLG DY + + G+GP A+E++ E
Sbjct: 951 KELSLSRDQLISLAQLLGSDYTEGLPGVGPVTAVEILSE 989
Score = 59.3 bits (142), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 29/66 (43%), Positives = 44/66 (66%), Gaps = 7/66 (10%)
Query: 318 RKICIDASMSLYQFLIAVRS-EGNQLMSVDGEPTSHLMGTFYRTIRLVEHGLKPIYVFDG 376
+++ +DAS+ +YQFL AVR EGN L + SH++G F R +L+ G++P++VFDG
Sbjct: 25 KRLAVDASIWIYQFLKAVRDKEGNALRN------SHVVGFFRRICKLLWFGIQPVFVFDG 78
Query: 377 KPPTLK 382
P LK
Sbjct: 79 GAPALK 84
>gi|429963370|gb|ELA42914.1| hypothetical protein VICG_00229 [Vittaforma corneae ATCC 50505]
Length = 358
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 50/175 (28%), Positives = 85/175 (48%), Gaps = 9/175 (5%)
Query: 32 AKKLLKARSSTTQGRLDSFFTIRREEKRK---APCEAEAQCAAMVKAGKVYATATEDMDA 88
A++L+K S T L S + + + +P EA+AQ + + + TED D
Sbjct: 115 ARELMKRCVSVTPEILHSILRVLKANNIEFIVSPYEADAQLYFLQRIKYIDYILTEDSDL 174
Query: 89 LTFGSNILLRHMTFSEARKLPVQEFHLEKVLEGMELSHEEFIDLCILLGCDYCDSIRGIG 148
+ +G+ +L + HL K + E +D+CIL GCDY DSIRGIG
Sbjct: 175 VVYGATRILYKYDGVHVEEYDSARLHLCK----DKYFQENILDICILSGCDYLDSIRGIG 230
Query: 149 PKRAIELIKEHRSIEKILENIDTKKYTVPEGWL--YKEARELFRHPEVADPETIE 201
A E +KE ++ + ++ + K VP+ ++ + +A+ F H V +P T++
Sbjct: 231 IVTAYEKLKELGDVDSFVNSMISLKKNVPKEYISDFVKAKATFLHHIVYNPYTMQ 285
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 47/76 (61%), Gaps = 2/76 (2%)
Query: 231 SFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGWL--YKEA 288
+ +D+CIL GCDY DSIRGIG A E +KE ++ + ++ + K VP+ ++ + +A
Sbjct: 210 NILDICILSGCDYLDSIRGIGIVTAYEKLKELGDVDSFVNSMISLKKNVPKEYISDFVKA 269
Query: 289 RELFRHPEIADPETIE 304
+ F H + +P T++
Sbjct: 270 KATFLHHIVYNPYTMQ 285
>gi|343424970|emb|CBQ68507.1| related to RAD2-structure-specific nuclease of the nucleotide
excision repairosome [Sporisorium reilianum SRZ2]
Length = 1495
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 59/91 (64%), Gaps = 5/91 (5%)
Query: 316 ESRKICIDASMSLYQFLIAVRSEGNQLMSVDGEPTSHLMGTFYRTIRLVEHGLKPIYVFD 375
E +++ ID+S+ LY F +A+R + + +S +H++G +R ++L+ HG++P++VFD
Sbjct: 23 EGKRLAIDSSLWLYHFQMAMRDKEGRTLS-----NAHILGFLWRILKLLFHGVRPVFVFD 77
Query: 376 GKPPTLKSGELNKRMEKREDAQKALAKAQEQ 406
G P +K L+ R +R+ A+++ A+ E+
Sbjct: 78 GGAPVMKRKTLSGRKARRQGAKESHARTAEK 108
Score = 59.3 bits (142), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 36/96 (37%), Positives = 52/96 (54%), Gaps = 3/96 (3%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVLE 120
AP EAEAQCA +V V T+D D FGS + ++M F+ + V+ F L +
Sbjct: 1025 APMEAEAQCAELVSRRLVDGIITDDSDVFLFGSTRIYKNM-FNNNKI--VECFLLSDMQR 1081
Query: 121 GMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELI 156
+ L E+ + L LG DY D + G+GP A+EL+
Sbjct: 1082 ELGLDREKLVRLAYYLGSDYTDGLAGVGPVVAMELL 1117
>gi|367019746|ref|XP_003659158.1| hypothetical protein MYCTH_2295852 [Myceliophthora thermophila ATCC
42464]
gi|347006425|gb|AEO53913.1| hypothetical protein MYCTH_2295852 [Myceliophthora thermophila ATCC
42464]
Length = 1244
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 40/99 (40%), Positives = 58/99 (58%), Gaps = 5/99 (5%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVLE 120
AP EAEAQCA +V+ G V T+D D FG + ++M F+ + + E +L K LE
Sbjct: 891 APMEAEAQCAELVRLGLVDGIVTDDSDTFLFGGTRVYKNM-FNSNKYV---ECYLAKDLE 946
Query: 121 G-MELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKE 158
+ LS E+ I L LLG DY + + G+GP A+E++ E
Sbjct: 947 TELSLSREQLIALAQLLGSDYTEGLPGVGPVTALEILSE 985
Score = 65.9 bits (159), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 33/70 (47%), Positives = 46/70 (65%), Gaps = 7/70 (10%)
Query: 318 RKICIDASMSLYQFLIAVRS-EGNQLMSVDGEPTSHLMGTFYRTIRLVEHGLKPIYVFDG 376
+++ IDAS+ +YQFL AVR EGN L + SH++G F R +L+ HG+KP++VFDG
Sbjct: 25 KRLAIDASIWIYQFLKAVRDKEGNALRN------SHVVGFFRRICKLLWHGVKPVFVFDG 78
Query: 377 KPPTLKSGEL 386
P LK L
Sbjct: 79 GAPALKRATL 88
>gi|294925837|ref|XP_002779016.1| Exodeoxyribonuclease, putative [Perkinsus marinus ATCC 50983]
gi|239887862|gb|EER10811.1| Exodeoxyribonuclease, putative [Perkinsus marinus ATCC 50983]
Length = 329
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 43/142 (30%), Positives = 68/142 (47%), Gaps = 3/142 (2%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVLE 120
AP EA+AQ A + G V A +ED D L FG ++ + V E + + +
Sbjct: 156 APYEADAQLAYLALNGLVDAVISEDSDLLPFGCPHVIYKLDLVAGSGPVVCEGNPDFLRT 215
Query: 121 GMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELI-KEHRSIEKILENIDTKKYTVPEG 179
+ + F+ C+L GCDY S+ G+GPK+A + + SI +I+ PEG
Sbjct: 216 LISFPQDSFLHYCVLAGCDYLPSVTGMGPKKAYGFVLRGGPSISRIMNLAQIAGLEFPEG 275
Query: 180 W--LYKEARELFRHPEVADPET 199
+ +++ A FRH V P +
Sbjct: 276 YADMFERALLTFRHQTVWCPSS 297
Score = 48.9 bits (115), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 41/78 (52%), Gaps = 3/78 (3%)
Query: 231 SFIDLCILLGCDYCDSIRGIGPKRAIELI-KEHRSIEKILENIDTKKYTVPEGW--LYKE 287
SF+ C+L GCDY S+ G+GPK+A + + SI +I+ PEG+ +++
Sbjct: 223 SFLHYCVLAGCDYLPSVTGMGPKKAYGFVLRGGPSISRIMNLAQIAGLEFPEGYADMFER 282
Query: 288 ARELFRHPEIADPETIEL 305
A FRH + P + L
Sbjct: 283 ALLTFRHQTVWCPSSRRL 300
>gi|389749913|gb|EIM91084.1| PIN domain-like protein [Stereum hirsutum FP-91666 SS1]
Length = 1350
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 37/98 (37%), Positives = 57/98 (58%), Gaps = 3/98 (3%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVLE 120
AP EAEAQCA +V+ G V T+D D FG + ++M F++++ V+ F L +
Sbjct: 924 APMEAEAQCATLVQLGLVEGIITDDSDVFLFGGLRVFKNM-FNQSKT--VECFLLSDLAR 980
Query: 121 GMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKE 158
+ L + + L LLG DY + + G+GP A+EL+KE
Sbjct: 981 ELGLERNKLVQLAYLLGSDYTEGLPGVGPVVAMELLKE 1018
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 54/92 (58%), Gaps = 7/92 (7%)
Query: 316 ESRKICIDASMSLYQFLIAVRS-EGNQLMSVDGEPTSHLMGTFYRTIRLVEHGLKPIYVF 374
E + + ID+S+ +YQF +R EG L++ +HL+G R +L+ +G+KP++VF
Sbjct: 23 EGKAMAIDSSIWIYQFQATMRDKEGRALVN------AHLVGFLRRICKLLFYGIKPVFVF 76
Query: 375 DGKPPTLKSGELNKRMEKREDAQKALAKAQEQ 406
DG P LK +++R +K+ A + K E+
Sbjct: 77 DGGAPALKRATISERKKKKSGAAASHVKIAER 108
>gi|290992099|ref|XP_002678672.1| predicted protein [Naegleria gruberi]
gi|284092285|gb|EFC45928.1| predicted protein [Naegleria gruberi]
Length = 985
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 34/118 (28%), Positives = 62/118 (52%), Gaps = 4/118 (3%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLP---VQEFHLEK 117
+P EA+AQC + K V A TED D FG+N + R++ F R + ++E+ ++
Sbjct: 684 SPSEADAQCGFLSKHNLVDAVITEDSDLFLFGANCVYRNV-FGSTRHIDKNIIEEYRMDN 742
Query: 118 VLEGMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYT 175
+ + + + I + +LLG DY D + +GP A +++ EK L+ + ++ T
Sbjct: 743 IFKVLGFTRTNLIQIALLLGSDYTDGVHNVGPVTATQVVDAFNPEEKELDEDNLEEVT 800
Score = 42.0 bits (97), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 22/88 (25%), Positives = 40/88 (45%), Gaps = 12/88 (13%)
Query: 314 IRESRKICIDASMSLYQFLIAV------------RSEGNQLMSVDGEPTSHLMGTFYRTI 361
+ + + +D S+ L+QF++ + R NQ +L F R
Sbjct: 22 VLSGKTVAVDISVWLHQFMLGMGLEDHDDEFFFGRGANNQTGQASFSQVRYLKALFKRIC 81
Query: 362 RLVEHGLKPIYVFDGKPPTLKSGELNKR 389
+L+ + +KPI++FDG P +K + KR
Sbjct: 82 KLLYYDIKPIFIFDGATPLVKQKTIQKR 109
>gi|299749580|ref|XP_001836208.2| flap structure-specific endonuclease [Coprinopsis cinerea
okayama7#130]
gi|298408502|gb|EAU85580.2| flap structure-specific endonuclease [Coprinopsis cinerea
okayama7#130]
Length = 1200
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 36/98 (36%), Positives = 57/98 (58%), Gaps = 3/98 (3%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVLE 120
AP EAEAQCA + G V T+D D FG++ + ++M F++++ V+ F L +
Sbjct: 814 APMEAEAQCAELTSLGLVDGVITDDSDVFLFGASRVFKNM-FNQSKT--VECFLLSDLER 870
Query: 121 GMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKE 158
+ L + I L LLG DY + + G+GP A+EL++E
Sbjct: 871 ELGLDRDTLIQLAYLLGSDYTEGLAGVGPVVAMELVRE 908
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/82 (37%), Positives = 50/82 (60%), Gaps = 7/82 (8%)
Query: 316 ESRKICIDASMSLYQFLIAVRS-EGNQLMSVDGEPTSHLMGTFYRTIRLVEHGLKPIYVF 374
E + + ID+S+ +YQF +R EG L++ +H++G R +L+ +G+KP++VF
Sbjct: 12 EGKVMAIDSSIWIYQFQATMRDKEGRGLVN------AHVLGFLRRIAKLLFYGIKPVFVF 65
Query: 375 DGKPPTLKSGELNKRMEKREDA 396
DG PTLK LN+R K+ A
Sbjct: 66 DGGAPTLKRATLNERRRKKSGA 87
>gi|363752988|ref|XP_003646710.1| hypothetical protein Ecym_5112 [Eremothecium cymbalariae
DBVPG#7215]
gi|356890346|gb|AET39893.1| hypothetical protein Ecym_5112 [Eremothecium cymbalariae
DBVPG#7215]
Length = 988
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 34/103 (33%), Positives = 57/103 (55%), Gaps = 3/103 (2%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVLE 120
AP EAEAQCA ++K V T+D D FG + + ++M + +A V+ + + +
Sbjct: 745 APMEAEAQCAELLKLKLVDGIITDDSDIFLFGGSNVYKNMFYEKAF---VEYYSSDSISL 801
Query: 121 GMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIE 163
+ L+ + I L LLG DY ++G+GP +E++ E R +E
Sbjct: 802 NLGLNRDMLISLAELLGSDYTTGVKGVGPVSGMEILAEFRDLE 844
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/93 (33%), Positives = 52/93 (55%), Gaps = 13/93 (13%)
Query: 317 SRKICIDASMSLYQFLIAVRSEGNQLMSVDGEPTSHLMGTFYRTIRLVEHGLKPIYVFDG 376
++++ +DAS+ +YQFL A G+ + +H++G F R +++ G+KP++VFDG
Sbjct: 24 NKRMAVDASIWIYQFLKATPDNGSHKLK-----NAHILGFFRRICKVLYFGMKPVFVFDG 78
Query: 377 KPPTLKSGELNKRMEKRE--------DAQKALA 401
P LK + +R E R+ AQK LA
Sbjct: 79 GAPPLKRETIRQRREARQGKRADAAVTAQKLLA 111
>gi|156836721|ref|XP_001642408.1| hypothetical protein Kpol_298p2 [Vanderwaltozyma polyspora DSM
70294]
gi|156112928|gb|EDO14550.1| hypothetical protein Kpol_298p2 [Vanderwaltozyma polyspora DSM
70294]
Length = 1037
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 34/107 (31%), Positives = 61/107 (57%), Gaps = 3/107 (2%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVLE 120
AP EAEAQCA ++ V T+D D FG + ++M F E + V+ + ++ +
Sbjct: 794 APMEAEAQCAELLLLKLVDGIITDDSDVFLFGGAKIYKNM-FQEKKY--VEFYDVQSINS 850
Query: 121 GMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILE 167
+ L + IDL +LLG DY + ++G+GP ++E++ + ++E+ E
Sbjct: 851 NLALDRKNMIDLALLLGSDYTNGVKGLGPVLSMEVLADFGTLERFKE 897
Score = 65.5 bits (158), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 33/85 (38%), Positives = 55/85 (64%), Gaps = 7/85 (8%)
Query: 318 RKICIDASMSLYQFLIAVR-SEGNQLMSVDGEPTSHLMGTFYRTIRLVEHGLKPIYVFDG 376
+K+ +DAS+ +YQFL AVR ++GN + +H++G F R +L+ +G+KP++VFDG
Sbjct: 25 QKMAVDASIWIYQFLKAVRDNKGNAVKD------AHIVGFFRRICKLLFYGIKPVFVFDG 78
Query: 377 KPPTLKSGELNKRMEKREDAQKALA 401
P LK + +R EKR+ + + A
Sbjct: 79 GVPALKKATIQERKEKRQGKRDSAA 103
>gi|402858507|ref|XP_003893743.1| PREDICTED: exonuclease 1 isoform 1 [Papio anubis]
gi|402858509|ref|XP_003893744.1| PREDICTED: exonuclease 1 isoform 2 [Papio anubis]
Length = 846
Score = 67.8 bits (164), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 52/153 (33%), Positives = 79/153 (51%), Gaps = 9/153 (5%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFG-SNILLRHMTFSEARKLPVQEFHLEKVL 119
AP EA+AQ A + KAG V A TED D L FG ++L+ F ++ + + L
Sbjct: 147 APYEADAQLAYLNKAGIVQAIITEDSDLLAFGCKKVILKMDQFGNGLEIDQARLGMCRQL 206
Query: 120 EGMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIK--EHRSIEKILENID---TKKY 174
G + E+F +CIL GCDY S+RGIG +A ++++ + I K+++ I
Sbjct: 207 -GDIFTEEKFRYMCILSGCDYLSSLRGIGLAKACKVLRLANNPDIVKVIKKIGHYLKMNI 265
Query: 175 TVPEGWL--YKEARELFRHPEVADPETIEFIDL 205
TVPE ++ + A F + V DP + I L
Sbjct: 266 TVPEDYIKGFIRANNTFLYQLVFDPIKRKLIPL 298
Score = 40.0 bits (92), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 48/93 (51%), Gaps = 13/93 (13%)
Query: 235 LCILLGCDYCDSIRGIGPKRAIELIK--EHRSIEKILENID---TKKYTVPEGWL--YKE 287
+CIL GCDY S+RGIG +A ++++ + I K+++ I TVPE ++ +
Sbjct: 218 MCILSGCDYLSSLRGIGLAKACKVLRLANNPDIVKVIKKIGHYLKMNITVPEDYIKGFIR 277
Query: 288 ARELFRHPEIADPETIELVA------DVAPSSI 314
A F + + DP +L+ DV P ++
Sbjct: 278 ANNTFLYQLVFDPIKRKLIPLNAYEDDVDPETL 310
>gi|169596320|ref|XP_001791584.1| hypothetical protein SNOG_00917 [Phaeosphaeria nodorum SN15]
gi|160701280|gb|EAT92412.2| hypothetical protein SNOG_00917 [Phaeosphaeria nodorum SN15]
Length = 1279
Score = 67.8 bits (164), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 34/78 (43%), Positives = 50/78 (64%), Gaps = 7/78 (8%)
Query: 318 RKICIDASMSLYQFLIAVRS-EGNQLMSVDGEPTSHLMGTFYRTIRLVEHGLKPIYVFDG 376
+++ +DAS+ +YQFL AVR EGN L + SH++G F R +L+ G+KP++VFDG
Sbjct: 25 KRLAVDASIWIYQFLKAVRDKEGNALRN------SHIVGFFRRVCKLLFIGIKPVFVFDG 78
Query: 377 KPPTLKSGELNKRMEKRE 394
P LK +N R +RE
Sbjct: 79 GAPVLKRQTINNRKSRRE 96
Score = 65.9 bits (159), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 52/176 (29%), Positives = 81/176 (46%), Gaps = 31/176 (17%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVLE 120
AP EAEAQCA +V G V T+D D FG + ++M F+ A+ V+ + ++
Sbjct: 943 APMEAEAQCAELVHLGLVDGIVTDDSDTFLFGGTRVYKNM-FNAAKF--VECYLANDLVS 999
Query: 121 GMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEK------------ILEN 168
L+ ++ I + LLG DY I GIGP A+EL+ E ++ I ++
Sbjct: 1000 EFSLTRDKMIAIAQLLGSDYTTGIPGIGPVTALELLAEFPDLQDFKDWWTGVQNNTIPKD 1059
Query: 169 ID-------------TKKYTVPEGWLYKEARELFRHPEV-ADPETIEF--IDLCIL 208
D K +P G+ + + + HPEV +DPE ++ DL L
Sbjct: 1060 ADKNSAFRRRFRRGQATKLFLPPGFPDQRVADAYLHPEVDSDPEPFQWGVPDLAAL 1115
Score = 47.4 bits (111), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 33/111 (29%), Positives = 51/111 (45%), Gaps = 7/111 (6%)
Query: 202 FIDLCILLGCDYCDSIRGIGPKRAIELLYSFIDLCILLGCDYCDSIRGIGPKRAIELIKE 261
I + LLG DY I GIGP A+ELL F DL D+ D G+ + +
Sbjct: 1008 MIAIAQLLGSDYTTGIPGIGPVTALELLAEFPDL-----QDFKDWWTGVQNNTIPKDADK 1062
Query: 262 HRSIEKILENIDTKKYTVPEGWLYKEARELFRHPEI-ADPETIEL-VADVA 310
+ + + K +P G+ + + + HPE+ +DPE + V D+A
Sbjct: 1063 NSAFRRRFRRGQATKLFLPPGFPDQRVADAYLHPEVDSDPEPFQWGVPDLA 1113
>gi|453080704|gb|EMF08754.1| PIN domain-like protein [Mycosphaerella populorum SO2202]
Length = 739
Score = 67.4 bits (163), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 49/142 (34%), Positives = 73/142 (51%), Gaps = 4/142 (2%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMT-FSEARKLPVQEFHLEKVL 119
AP EA++Q A + K G + +ED D L FG N LL + F E + +F + +
Sbjct: 147 APYEADSQLAYLEKEGIINGVLSEDSDLLVFGVNCLLTKLDQFGECVMVNRADFTSVRDI 206
Query: 120 EGMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENID-TKKYTVPE 178
+ S +EF + +L GCDY I IG K A L+++H++IEKI+ + K VP+
Sbjct: 207 SLVGWSDKEFRMMAMLSGCDYLPGIDKIGLKTAYRLVRKHKTIEKIVRTVQFDGKMKVPK 266
Query: 179 GWL--YKEARELFRHPEVADPE 198
+L + A F H V PE
Sbjct: 267 DYLDAFYRAERTFMHQWVFCPE 288
Score = 42.4 bits (98), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 36/66 (54%), Gaps = 3/66 (4%)
Query: 232 FIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENID-TKKYTVPEGWL--YKEA 288
F + +L GCDY I IG K A L+++H++IEKI+ + K VP+ +L + A
Sbjct: 216 FRMMAMLSGCDYLPGIDKIGLKTAYRLVRKHKTIEKIVRTVQFDGKMKVPKDYLDAFYRA 275
Query: 289 RELFRH 294
F H
Sbjct: 276 ERTFMH 281
>gi|406861963|gb|EKD15015.1| putative exonuclease [Marssonina brunnea f. sp. 'multigermtubi'
MB_m1]
Length = 776
Score = 67.4 bits (163), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 47/140 (33%), Positives = 75/140 (53%), Gaps = 8/140 (5%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMT-FSEARKLPVQEFHL--EK 117
AP EA+AQ + + G + +ED D L FG+ LL + + ++ +F E
Sbjct: 147 APYEADAQMVYLERNGVIDGILSEDSDLLVFGAKCLLTKLDQYGNCIEINKADFSACREI 206
Query: 118 VLEGMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENID-TKKYTV 176
L G S +EF + IL GCDY SI +G K A ++++H++IEKI+ + K+ V
Sbjct: 207 TLTGW--SEKEFRTMAILSGCDYLASINNMGLKTAYRMVRKHKTIEKIIRMLTFDGKFHV 264
Query: 177 PEGWL--YKEARELFRHPEV 194
P+G+L +++A F H V
Sbjct: 265 PQGYLEAFRQAEFTFLHQRV 284
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 41/66 (62%), Gaps = 3/66 (4%)
Query: 232 FIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENID-TKKYTVPEGWL--YKEA 288
F + IL GCDY SI +G K A ++++H++IEKI+ + K+ VP+G+L +++A
Sbjct: 216 FRTMAILSGCDYLASINNMGLKTAYRMVRKHKTIEKIIRMLTFDGKFHVPQGYLEAFRQA 275
Query: 289 RELFRH 294
F H
Sbjct: 276 EFTFLH 281
>gi|340374507|ref|XP_003385779.1| PREDICTED: exonuclease 1-like [Amphimedon queenslandica]
Length = 650
Score = 67.4 bits (163), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 49/147 (33%), Positives = 76/147 (51%), Gaps = 12/147 (8%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVLE 120
AP EA+AQ A +VK G TED D L FG + + M + KL L + +
Sbjct: 151 APYEADAQLAYLVKEGLADFVITEDSDLLAFGVSQVFFKMNDTGHGKL----MELRDIAK 206
Query: 121 GME----LSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKE-HRSIEKILENIDT-KKY 174
G + + F LCIL GCDY S+ GIGP A +L+K+ ++ K++ + + K+
Sbjct: 207 GNPSLKGFTPDSFRHLCILCGCDYLPSVHGIGPVTAAKLMKKCNKDPYKVIRYLKSGSKH 266
Query: 175 TVPEGW--LYKEARELFRHPEVADPET 199
VP G+ +++A + F + V DP +
Sbjct: 267 KVPPGYEEHFRQADQAFLYQLVFDPRS 293
Score = 48.1 bits (113), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 51/91 (56%), Gaps = 11/91 (12%)
Query: 216 SIRGIGPKRAIELLYSFIDLCILLGCDYCDSIRGIGPKRAIELIKE-HRSIEKILENIDT 274
S++G P SF LCIL GCDY S+ GIGP A +L+K+ ++ K++ + +
Sbjct: 210 SLKGFTPD-------SFRHLCILCGCDYLPSVHGIGPVTAAKLMKKCNKDPYKVIRYLKS 262
Query: 275 -KKYTVPEGW--LYKEARELFRHPEIADPET 302
K+ VP G+ +++A + F + + DP +
Sbjct: 263 GSKHKVPPGYEEHFRQADQAFLYQLVFDPRS 293
>gi|353243442|emb|CCA74982.1| related to RAD27-ssDNA endonuclease and 5`-3`exonuclease
[Piriformospora indica DSM 11827]
Length = 498
Score = 67.4 bits (163), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 45/146 (30%), Positives = 80/146 (54%), Gaps = 10/146 (6%)
Query: 60 KAPCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVL 119
+AP E E +A+ AG A+ED D + +G+ LLR +T ++A+ P+ + +L
Sbjct: 306 EAPYEGEGLASAIALAGHADYVASEDTDVIVYGAP-LLRGLT-NQAK--PLVLIDSQDIL 361
Query: 120 EGMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEG 179
+ ++ EEFID +L+G D+ + +GP A++ +++ SI +ILEN + K +
Sbjct: 362 TALTMTREEFIDFALLIGTDFTQRLHKVGPVAALKHTRKYGSIPRILEN-EKKIQLSNDP 420
Query: 180 WLYKE----ARELFRH-PEVADPETI 200
+Y E AR++F P V P+ +
Sbjct: 421 VIYLEQVEVARQIFTSLPPVPSPDEL 446
>gi|322694710|gb|EFY86532.1| DNA excision repair protein Rad2 [Metarhizium acridum CQMa 102]
Length = 1168
Score = 67.4 bits (163), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 38/99 (38%), Positives = 58/99 (58%), Gaps = 5/99 (5%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVLE 120
AP EAEAQCA +V+ G V T+D D FG + ++M F+ + + E ++ K LE
Sbjct: 894 APMEAEAQCAELVRLGIVDGIVTDDSDTFLFGGTRVYKNM-FNSNKFV---ECYISKDLE 949
Query: 121 G-MELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKE 158
+ LS ++ I L LLG DY + + G+GP A+E++ E
Sbjct: 950 KELSLSRDQLISLAQLLGSDYTEGLPGVGPVTAVEILSE 988
Score = 59.3 bits (142), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 29/66 (43%), Positives = 44/66 (66%), Gaps = 7/66 (10%)
Query: 318 RKICIDASMSLYQFLIAVRS-EGNQLMSVDGEPTSHLMGTFYRTIRLVEHGLKPIYVFDG 376
+++ +DAS+ +YQFL AVR EGN L + SH++G F R +L+ G++P++VFDG
Sbjct: 25 KRLAVDASIWIYQFLKAVRDKEGNALRN------SHVVGFFRRICKLLWFGIQPVFVFDG 78
Query: 377 KPPTLK 382
P LK
Sbjct: 79 GAPALK 84
>gi|326474654|gb|EGD98663.1| DNA excision repair protein [Trichophyton tonsurans CBS 112818]
Length = 1119
Score = 67.4 bits (163), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 60/207 (28%), Positives = 90/207 (43%), Gaps = 47/207 (22%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVLE 120
AP EAEAQCA +V G V T+D D FG + ++M F++++ + E +L LE
Sbjct: 808 APMEAEAQCAELVTLGLVDGIVTDDSDTFLFGGTRIYKNM-FNQSKYV---ECYLSSDLE 863
Query: 121 G-MELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIE---------------- 163
L ++ I LLG DY + I GIGP A+E++ E +E
Sbjct: 864 KEYTLDRKKLISFSHLLGSDYTEGIPGIGPVTALEILTEFSGLEEFRDWWSQVQLGNKIP 923
Query: 164 ---------KILENIDTKKYTVPEGWLYKEARELFRHPEV-ADPETIEFIDLCILLGCDY 213
K +NI K +P G+ K + + PEV +DP ++ G
Sbjct: 924 DDPHARFRKKFKKNI--TKLFLPPGFPDKAVEKAYLEPEVDSDPSEFKW-------GVPD 974
Query: 214 CDSIR-------GIGPKRAIELLYSFI 233
D++R G P+R E+L I
Sbjct: 975 LDAVRQFLMATVGWSPERTDEVLVPVI 1001
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 31/66 (46%), Positives = 44/66 (66%), Gaps = 7/66 (10%)
Query: 318 RKICIDASMSLYQFLIAVRS-EGNQLMSVDGEPTSHLMGTFYRTIRLVEHGLKPIYVFDG 376
R++ IDAS+ +YQFL AVR EGN L + +H++G F R +L+ G+KP++VFDG
Sbjct: 25 RRLAIDASIWIYQFLKAVRDKEGNALRN------AHIVGFFRRICKLLYFGIKPVFVFDG 78
Query: 377 KPPTLK 382
P LK
Sbjct: 79 GAPILK 84
>gi|310790037|gb|EFQ25570.1| DNA excision repair protein [Glomerella graminicola M1.001]
Length = 1271
Score = 67.4 bits (163), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 42/112 (37%), Positives = 63/112 (56%), Gaps = 20/112 (17%)
Query: 318 RKICIDASMSLYQFLIAVRS-EGNQLMSVDGEPTSHLMGTFYRTIRLVEHGLKPIYVFDG 376
+++ +DAS+ +YQFL AVR EGN L + SH++G F R +L+ G+KP++VFDG
Sbjct: 25 KRLAVDASIWIYQFLKAVRDKEGNALRN------SHVVGFFRRICKLLWFGIKPVFVFDG 78
Query: 377 KPPTLK----SGELNKRMEKREDAQKALAK---------AQEQGKLKWSDPD 415
P LK G +R +REDA + K A+E+G+ + D D
Sbjct: 79 GAPALKRQTIQGRKQRREGRREDAVRTAGKLLAVQMQRIAEEEGERRKRDAD 130
Score = 64.7 bits (156), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 38/99 (38%), Positives = 57/99 (57%), Gaps = 5/99 (5%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVLE 120
AP EAEAQCA +V+ G V T+D D FG + ++M F+ + + E +L LE
Sbjct: 953 APMEAEAQCAELVQLGLVDGIVTDDSDCFLFGGTRIYKNM-FNSNKFV---ECYLSSDLE 1008
Query: 121 G-MELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKE 158
+ LS E+ I + LLG DY + + G+GP A+E++ E
Sbjct: 1009 KELSLSREQLIAIAQLLGSDYTEGLPGVGPVTAVEILSE 1047
>gi|354611070|ref|ZP_09029026.1| Flap structure-specific endonuclease [Halobacterium sp. DL1]
gi|353195890|gb|EHB61392.1| Flap structure-specific endonuclease [Halobacterium sp. DL1]
Length = 327
Score = 67.4 bits (163), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 47/143 (32%), Positives = 70/143 (48%), Gaps = 11/143 (7%)
Query: 60 KAPCEAEAQCAAMVKAGK-VYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKV 118
+AP E EAQ + M + V ++D D L GS + LR +T K + +
Sbjct: 150 EAPAEGEAQASYMARVDDAVDYAGSDDYDCLLLGSPLTLRQLT----SKGDPERMDFQAT 205
Query: 119 LEGMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPE 178
L+ +L+ E+ +D+ IL G D+ I G GPK A++ I EH + +L D + V
Sbjct: 206 LDRHDLTWEQLVDVGILCGTDFNPGIDGFGPKTALKAIHEHGDLWAVL---DAEDEYVEY 262
Query: 179 GWLYKEARELFRHPEVADPETIE 201
G RELF +P+V D IE
Sbjct: 263 G---DRIRELFLNPDVTDDYDIE 282
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/99 (27%), Positives = 50/99 (50%), Gaps = 2/99 (2%)
Query: 311 PSSIRESRKICIDASMSLYQFLIAV--RSEGNQLMSVDGEPTSHLMGTFYRTIRLVEHGL 368
P + E + +D LY++L + + + G ++L+G + EH L
Sbjct: 16 PFADVEGSVVAVDVHNWLYKYLTTTVQWTSDDVYTTAAGTEVANLVGVVQGLPKFFEHDL 75
Query: 369 KPIYVFDGKPPTLKSGELNKRMEKREDAQKALAKAQEQG 407
P++V+DG LK E+ +R ++RE+ ++ LA A+E G
Sbjct: 76 TPVFVWDGGVTELKDEEIEERRDQREEYEEQLADAREAG 114
Score = 45.1 bits (105), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 47/96 (48%), Gaps = 8/96 (8%)
Query: 232 FIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGWLYKEAREL 291
+D+ IL G D+ I G GPK A++ I EH + +L D + V G REL
Sbjct: 216 LVDVGILCGTDFNPGIDGFGPKTALKAIHEHGDLWAVL---DAEDEYVEYG---DRIREL 269
Query: 292 FRHPEIADPETIE--LVADVAPSSIRESRKICIDAS 325
F +P++ D IE L DVA + + + +DA
Sbjct: 270 FLNPDVTDDYDIETALSPDVAAAREFVTEQWEVDAD 305
>gi|326482848|gb|EGE06858.1| DNA-repair protein rad13 [Trichophyton equinum CBS 127.97]
Length = 1119
Score = 67.4 bits (163), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 60/207 (28%), Positives = 90/207 (43%), Gaps = 47/207 (22%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVLE 120
AP EAEAQCA +V G V T+D D FG + ++M F++++ + E +L LE
Sbjct: 808 APMEAEAQCAELVTLGLVDGIVTDDSDTFLFGGTRIYKNM-FNQSKYV---ECYLSSDLE 863
Query: 121 G-MELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIE---------------- 163
L ++ I LLG DY + I GIGP A+E++ E +E
Sbjct: 864 KEYTLDRKKLISFSHLLGSDYTEGIPGIGPVTALEILTEFSGLEEFRDWWSQVQLGNKIP 923
Query: 164 ---------KILENIDTKKYTVPEGWLYKEARELFRHPEV-ADPETIEFIDLCILLGCDY 213
K +NI K +P G+ K + + PEV +DP ++ G
Sbjct: 924 DDPHARFRKKFKKNI--TKLFLPPGFPDKAVEKAYLEPEVDSDPSEFKW-------GVPD 974
Query: 214 CDSIR-------GIGPKRAIELLYSFI 233
D++R G P+R E+L I
Sbjct: 975 LDAVRQFLMATVGWSPERTDEVLVPVI 1001
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 31/66 (46%), Positives = 44/66 (66%), Gaps = 7/66 (10%)
Query: 318 RKICIDASMSLYQFLIAVRS-EGNQLMSVDGEPTSHLMGTFYRTIRLVEHGLKPIYVFDG 376
R++ IDAS+ +YQFL AVR EGN L + +H++G F R +L+ G+KP++VFDG
Sbjct: 25 RRLAIDASIWIYQFLKAVRDKEGNALRN------AHIVGFFRRICKLLYFGIKPVFVFDG 78
Query: 377 KPPTLK 382
P LK
Sbjct: 79 GAPILK 84
>gi|393242077|gb|EJD49596.1| hypothetical protein AURDEDRAFT_182745 [Auricularia delicata
TFB-10046 SS5]
Length = 1291
Score = 67.4 bits (163), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 37/98 (37%), Positives = 57/98 (58%), Gaps = 3/98 (3%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVLE 120
AP EAEAQCA +V G V T+D D FGS + ++M F++++ V+ F +
Sbjct: 902 APMEAEAQCATLVALGLVEGVITDDSDVFLFGSARVFKNM-FNQSKT--VECFIAGDLTR 958
Query: 121 GMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKE 158
+ L ++ I L LLG DY D + G+GP A+E+++E
Sbjct: 959 ELGLDRDKLIRLAYLLGSDYVDGLPGVGPVVAMEILEE 996
Score = 53.5 bits (127), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 53/92 (57%), Gaps = 7/92 (7%)
Query: 316 ESRKICIDASMSLYQFLIAVRS-EGNQLMSVDGEPTSHLMGTFYRTIRLVEHGLKPIYVF 374
E + + ID+S+ LYQF +R +G L++ +H++G R +L+ +G+KP++VF
Sbjct: 23 EGKTMAIDSSIWLYQFQATMRDKDGRALVN------AHILGFLRRICKLLFYGIKPVFVF 76
Query: 375 DGKPPTLKSGELNKRMEKREDAQKALAKAQEQ 406
DG P +K + +R +++ + AK E+
Sbjct: 77 DGGAPAIKKATITERKKRKSGFAASHAKLAER 108
>gi|401828649|ref|XP_003888038.1| DNA repair flap endonuclease [Encephalitozoon hellem ATCC 50504]
gi|392999112|gb|AFM99057.1| DNA repair flap endonuclease [Encephalitozoon hellem ATCC 50504]
Length = 564
Score = 67.4 bits (163), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 35/98 (35%), Positives = 57/98 (58%), Gaps = 4/98 (4%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVLE 120
AP EA++QC M + V TED D L +G I F + R+ ++++ LEK+ E
Sbjct: 408 APTEADSQCGFMCYSNIVDGVITEDNDVLLYGGTIFRNF--FRKDRE--IEKYSLEKIEE 463
Query: 121 GMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKE 158
++L + I+L LLG DY +RGIGP +A++ +++
Sbjct: 464 ELKLDRKNLIELSHLLGSDYTPGVRGIGPVKALDAVRK 501
>gi|168048916|ref|XP_001776911.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162671767|gb|EDQ58314.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 327
Score = 67.4 bits (163), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 42/149 (28%), Positives = 71/149 (47%), Gaps = 3/149 (2%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFG-SNILLRHMTFSEARKLPVQEFHLEKVL 119
AP EA+AQ + V TED D + +G I + + + + K +
Sbjct: 147 APYEADAQLVFLALNRHVDFVITEDSDLIVYGCPQIFFKMDKHGQGVGFQISDITANKDI 206
Query: 120 EGMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEG 179
+ + + + +++CI+ GCDY S+ GIG KR+ LIK R+ +K L++++ K +
Sbjct: 207 DLSDFTKQMILEMCIMSGCDYLPSLPGIGVKRSHGLIKRFRTYQKALKHLEAKGVLIDPQ 266
Query: 180 W--LYKEARELFRHPEVADPETIEFIDLC 206
+ + A FRH V DP E + L
Sbjct: 267 YEQGFHRAILTFRHHRVYDPVKKEMVHLT 295
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 44/76 (57%), Gaps = 2/76 (2%)
Query: 233 IDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGW--LYKEARE 290
+++CI+ GCDY S+ GIG KR+ LIK R+ +K L++++ K + + + A
Sbjct: 217 LEMCIMSGCDYLPSLPGIGVKRSHGLIKRFRTYQKALKHLEAKGVLIDPQYEQGFHRAIL 276
Query: 291 LFRHPEIADPETIELV 306
FRH + DP E+V
Sbjct: 277 TFRHHRVYDPVKKEMV 292
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.322 0.137 0.424
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,145,663,309
Number of Sequences: 23463169
Number of extensions: 334985936
Number of successful extensions: 1074320
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 2104
Number of HSP's successfully gapped in prelim test: 1683
Number of HSP's that attempted gapping in prelim test: 1033709
Number of HSP's gapped (non-prelim): 24475
length of query: 531
length of database: 8,064,228,071
effective HSP length: 147
effective length of query: 384
effective length of database: 8,910,109,524
effective search space: 3421482057216
effective search space used: 3421482057216
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 79 (35.0 bits)