Query psy1206
Match_columns 531
No_of_seqs 411 out of 1977
Neff 5.6
Searched_HMMs 29240
Date Fri Aug 16 17:36:26 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy1206.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/1206hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1b43_A Protein (FEN-1); nuclea 100.0 1.7E-40 5.8E-45 344.0 18.8 161 7-168 71-266 (340)
2 3ory_A Flap endonuclease 1; hy 100.0 1.3E-40 4.4E-45 348.0 17.8 157 13-169 90-281 (363)
3 3q8k_A Flap endonuclease 1; he 100.0 6.9E-40 2.4E-44 340.0 21.0 236 13-458 81-341 (341)
4 1ul1_X Flap endonuclease-1; pr 100.0 7.8E-40 2.7E-44 343.9 19.8 210 45-461 138-347 (379)
5 2izo_A FEN1, flap structure-sp 100.0 2.6E-39 8.9E-44 336.0 16.3 125 45-169 130-264 (346)
6 3qe9_Y Exonuclease 1; exonucle 100.0 6E-39 2.1E-43 334.2 15.3 214 10-227 71-320 (352)
7 1a76_A Flap endonuclease-1 pro 100.0 1.9E-37 6.5E-42 319.4 20.2 155 11-169 74-255 (326)
8 1rxw_A Flap structure-specific 100.0 1.3E-33 4.5E-38 291.9 17.9 188 13-206 76-296 (336)
9 1exn_A 5'-exonuclease, 5'-nucl 100.0 5E-29 1.7E-33 253.0 11.0 153 7-172 58-236 (290)
10 3ory_A Flap endonuclease 1; hy 99.9 2.9E-25 1E-29 232.0 12.5 124 315-446 33-157 (363)
11 1bgx_T TAQ DNA polymerase; DNA 99.9 4.9E-27 1.7E-31 267.7 -1.5 152 9-173 60-225 (832)
12 3q8k_A Flap endonuclease 1; he 99.9 3.2E-25 1.1E-29 230.0 11.7 135 304-446 7-148 (341)
13 3qe9_Y Exonuclease 1; exonucle 99.9 1.9E-23 6.6E-28 217.5 12.9 120 314-446 21-141 (352)
14 2izo_A FEN1, flap structure-sp 99.9 6.9E-23 2.4E-27 212.7 7.4 123 316-446 17-140 (346)
15 1b43_A Protein (FEN-1); nuclea 99.9 3.2E-22 1.1E-26 207.1 7.3 125 314-446 18-143 (340)
16 1rxw_A Flap structure-specific 99.8 3.7E-21 1.3E-25 198.8 13.9 125 313-446 17-142 (336)
17 1ul1_X Flap endonuclease-1; pr 99.8 1.7E-22 5.8E-27 212.2 1.7 124 316-447 26-149 (379)
18 1a76_A Flap endonuclease-1 pro 99.8 1.1E-21 3.8E-26 201.9 -3.5 125 314-446 18-143 (326)
19 3h7i_A Ribonuclease H, RNAse H 99.8 5.4E-20 1.9E-24 186.6 4.6 125 7-150 62-211 (305)
20 1exn_A 5'-exonuclease, 5'-nucl 98.9 1.1E-09 3.7E-14 111.2 4.9 81 304-397 6-89 (290)
21 1bgx_T TAQ DNA polymerase; DNA 98.7 1.2E-09 4.1E-14 125.0 -1.8 82 311-396 6-88 (832)
22 2ztd_A Holliday junction ATP-d 95.6 0.0081 2.8E-07 58.2 4.1 49 115-169 69-117 (212)
23 1ixr_A Holliday junction DNA h 95.5 0.011 3.8E-07 56.3 4.7 25 144-169 77-101 (191)
24 2a1j_A DNA repair endonuclease 95.1 0.013 4.4E-07 45.9 3.1 26 142-167 7-32 (63)
25 1cuk_A RUVA protein; DNA repai 94.8 0.017 5.9E-07 55.5 3.8 25 144-169 78-102 (203)
26 1z00_B DNA repair endonuclease 94.3 0.03 1E-06 46.6 3.5 26 143-168 22-47 (84)
27 2a1j_A DNA repair endonuclease 94.1 0.018 6.2E-07 45.1 1.8 28 243-270 5-32 (63)
28 2y35_A LD22664P; hydrolase-DNA 93.4 0.062 2.1E-06 63.4 5.3 102 55-156 162-306 (1140)
29 1x2i_A HEF helicase/nuclease; 93.1 0.063 2.1E-06 42.3 3.5 26 142-167 17-42 (75)
30 1z00_B DNA repair endonuclease 93.1 0.036 1.2E-06 46.1 2.0 29 243-271 19-47 (84)
31 4glx_A DNA ligase; inhibitor, 92.8 0.16 5.4E-06 56.1 7.1 93 143-281 484-585 (586)
32 1kft_A UVRC, excinuclease ABC 92.8 0.043 1.5E-06 44.2 2.0 28 141-168 26-53 (78)
33 1z00_A DNA excision repair pro 92.6 0.077 2.6E-06 43.8 3.4 26 142-167 22-47 (89)
34 3fqd_A Protein DHP1, 5'-3' exo 92.5 0.18 6.3E-06 57.7 7.2 95 55-149 195-349 (899)
35 2a1j_B DNA excision repair pro 91.7 0.11 3.7E-06 43.1 3.2 25 142-166 35-59 (91)
36 3b0x_A DNA polymerase beta fam 91.2 0.24 8.2E-06 54.3 6.2 27 143-169 97-125 (575)
37 2w9m_A Polymerase X; SAXS, DNA 91.1 0.23 8E-06 54.5 6.0 28 142-169 100-128 (578)
38 2owo_A DNA ligase; protein-DNA 89.9 0.36 1.2E-05 54.1 6.2 60 219-278 519-582 (671)
39 3sgi_A DNA ligase; HET: DNA AM 89.9 0.06 2.1E-06 59.7 0.0 36 244-279 563-600 (615)
40 1kft_A UVRC, excinuclease ABC 89.7 0.16 5.5E-06 40.8 2.4 28 244-271 26-53 (78)
41 3pie_A 5'->3' exoribonuclease 89.6 0.27 9.2E-06 57.9 5.1 96 55-150 163-302 (1155)
42 2nrt_A Uvrabc system protein C 89.4 0.17 5.7E-06 49.3 2.7 26 142-167 171-196 (220)
43 1dgs_A DNA ligase; AMP complex 88.2 0.4 1.4E-05 53.7 5.1 35 244-278 541-577 (667)
44 1z00_A DNA excision repair pro 87.7 0.3 1E-05 40.1 2.8 28 244-271 21-48 (89)
45 1x2i_A HEF helicase/nuclease; 87.6 0.32 1.1E-05 38.1 2.8 28 244-271 16-43 (75)
46 2a1j_B DNA excision repair pro 85.0 0.54 1.8E-05 38.8 3.0 27 244-270 34-60 (91)
47 3c65_A Uvrabc system protein C 84.3 0.2 6.7E-06 49.0 0.0 28 141-168 175-202 (226)
48 2bgw_A XPF endonuclease; hydro 83.9 0.42 1.4E-05 45.6 2.1 25 142-166 165-189 (219)
49 1dgs_A DNA ligase; AMP complex 80.9 0.81 2.8E-05 51.2 3.3 24 246-269 511-534 (667)
50 2nrt_A Uvrabc system protein C 79.9 0.78 2.7E-05 44.6 2.4 27 244-270 170-196 (220)
51 4gfj_A Topoisomerase V; helix- 78.0 0.97 3.3E-05 47.9 2.5 28 244-271 470-497 (685)
52 1ixr_A Holliday junction DNA h 76.7 0.88 3E-05 43.2 1.7 20 245-264 75-94 (191)
53 1cuk_A RUVA protein; DNA repai 73.6 0.98 3.3E-05 43.2 1.1 20 245-264 76-95 (203)
54 4gfj_A Topoisomerase V; helix- 73.5 1.8 6.3E-05 45.8 3.2 25 143-167 472-496 (685)
55 3h7i_A Ribonuclease H, RNAse H 72.6 2.7 9.2E-05 42.7 4.1 72 318-395 14-96 (305)
56 3c65_A Uvrabc system protein C 71.9 0.78 2.7E-05 44.7 0.0 28 244-271 175-202 (226)
57 2owo_A DNA ligase; protein-DNA 71.7 3.6 0.00012 46.0 5.3 26 246-271 516-541 (671)
58 2csb_A Topoisomerase V, TOP61; 69.5 5.5 0.00019 39.8 5.4 80 144-269 416-495 (519)
59 2bgw_A XPF endonuclease; hydro 69.5 1.5 5.2E-05 41.6 1.4 27 244-270 164-190 (219)
60 1s5l_U Photosystem II 12 kDa e 68.9 1.3 4.3E-05 39.9 0.7 25 143-167 67-93 (134)
61 2ziu_A MUS81 protein; helix-ha 65.5 4.9 0.00017 40.2 4.3 74 229-333 232-305 (311)
62 4glx_A DNA ligase; inhibitor, 61.6 12 0.0004 41.3 6.6 25 246-270 516-540 (586)
63 2duy_A Competence protein come 58.3 6.3 0.00022 31.0 2.9 39 216-258 31-69 (75)
64 2ziu_A MUS81 protein; helix-ha 57.5 6.6 0.00023 39.3 3.6 30 142-171 240-269 (311)
65 2ztd_A Holliday junction ATP-d 56.3 3.8 0.00013 39.5 1.5 28 228-264 83-110 (212)
66 2i5h_A Hypothetical protein AF 54.9 8.6 0.00029 36.8 3.6 48 123-170 111-168 (205)
67 1vq8_Y 50S ribosomal protein L 54.8 2.6 8.8E-05 41.4 0.0 26 141-166 17-43 (241)
68 3arc_U Photosystem II 12 kDa e 54.1 3.4 0.00012 35.0 0.7 25 142-166 29-55 (97)
69 2bcq_A DNA polymerase lambda; 51.4 9.1 0.00031 39.1 3.5 28 142-169 99-127 (335)
70 2duy_A Competence protein come 49.2 7.9 0.00027 30.4 2.1 18 142-159 30-47 (75)
71 1jms_A Terminal deoxynucleotid 49.0 9.9 0.00034 39.5 3.3 25 143-167 125-150 (381)
72 3iz6_M 40S ribosomal protein S 48.8 13 0.00044 34.0 3.7 52 230-281 7-81 (152)
73 2fmp_A DNA polymerase beta; nu 47.4 9.4 0.00032 39.0 2.8 27 142-168 101-128 (335)
74 3c1y_A DNA integrity scanning 46.5 7.8 0.00027 40.4 2.0 26 143-168 319-344 (377)
75 3u5c_S 40S ribosomal protein S 46.3 15 0.00052 33.3 3.7 51 231-281 10-83 (146)
76 2ihm_A POL MU, DNA polymerase 45.8 11 0.00039 38.7 3.2 25 142-166 105-130 (360)
77 3b0x_A DNA polymerase beta fam 43.8 14 0.00047 40.3 3.6 45 216-262 97-148 (575)
78 1s5l_U Photosystem II 12 kDa e 41.5 6.1 0.00021 35.5 0.3 16 245-260 66-81 (134)
79 2w9m_A Polymerase X; SAXS, DNA 40.3 29 0.00098 37.9 5.4 42 215-258 100-147 (578)
80 3c1y_A DNA integrity scanning 39.6 8.4 0.00029 40.2 1.0 28 244-271 317-344 (377)
81 1vq8_Y 50S ribosomal protein L 39.5 6.2 0.00021 38.6 0.0 15 363-377 178-192 (241)
82 3arc_U Photosystem II 12 kDa e 36.7 8.4 0.00029 32.6 0.4 17 244-260 28-44 (97)
83 3maj_A DNA processing chain A; 36.6 21 0.00073 37.2 3.5 41 123-169 16-56 (382)
84 2f23_A Anti-cleavage anti-GREA 35.6 50 0.0017 29.7 5.4 56 384-444 17-72 (156)
85 3vdp_A Recombination protein R 35.3 15 0.0005 35.4 1.9 17 142-158 29-45 (212)
86 2csb_A Topoisomerase V, TOP61; 32.1 46 0.0016 33.3 4.8 57 217-273 359-442 (519)
87 1vdd_A Recombination protein R 30.4 20 0.00068 34.9 1.9 17 142-158 15-31 (228)
88 3maj_A DNA processing chain A; 29.1 30 0.001 36.1 3.1 29 244-272 28-56 (382)
89 3vdp_A Recombination protein R 28.9 18 0.00062 34.8 1.3 17 244-260 28-44 (212)
90 2bcq_A DNA polymerase lambda; 25.1 42 0.0015 34.1 3.3 28 245-272 99-127 (335)
91 2zix_A Crossover junction endo 25.0 12 0.00041 37.4 -0.7 67 244-333 235-301 (307)
92 2edu_A Kinesin-like protein KI 24.7 33 0.0011 28.3 2.1 18 142-159 43-60 (98)
93 2zix_A Crossover junction endo 24.7 8.8 0.0003 38.4 -1.8 32 140-171 234-265 (307)
94 2i5h_A Hypothetical protein AF 24.3 31 0.0011 33.0 2.0 29 244-272 134-167 (205)
95 3pie_A 5'->3' exoribonuclease 24.1 71 0.0024 37.9 5.3 84 320-408 32-120 (1155)
96 1vdd_A Recombination protein R 23.9 26 0.00087 34.1 1.3 17 244-260 14-30 (228)
97 1qfq_B N36, 36-MER N-terminal 23.9 44 0.0015 22.5 2.1 19 386-404 3-21 (35)
98 2y35_A LD22664P; hydrolase-DNA 23.1 58 0.002 38.6 4.4 86 318-409 30-121 (1140)
99 2p4v_A Transcription elongatio 22.7 1.1E+02 0.0036 27.7 5.2 54 384-442 16-70 (158)
100 2fmp_A DNA polymerase beta; nu 22.6 35 0.0012 34.7 2.2 27 244-270 100-127 (335)
101 3j20_O 30S ribosomal protein S 22.5 25 0.00084 32.0 0.9 34 230-263 2-44 (148)
102 1jms_A Terminal deoxynucleotid 22.4 48 0.0016 34.3 3.2 26 245-270 124-150 (381)
103 2edu_A Kinesin-like protein KI 22.3 82 0.0028 25.8 4.1 15 245-259 73-87 (98)
104 2xzm_M RPS18E; ribosome, trans 21.8 30 0.001 31.7 1.3 33 231-263 10-51 (155)
105 3sgi_A DNA ligase; HET: DNA AM 21.2 20 0.00069 39.7 0.0 26 246-271 533-558 (615)
106 2ihm_A POL MU, DNA polymerase 21.2 50 0.0017 33.9 3.0 26 244-269 104-130 (360)
107 3fhg_A Mjogg, N-glycosylase/DN 20.8 42 0.0014 31.5 2.2 17 142-158 120-136 (207)
108 2ziu_B Crossover junction endo 20.7 83 0.0028 32.0 4.5 39 228-274 249-287 (341)
No 1
>1b43_A Protein (FEN-1); nuclease, DNA repair, DNA replication, transferase; 2.00A {Pyrococcus furiosus} SCOP: a.60.7.1 c.120.1.2 PDB: 1mc8_A
Probab=100.00 E-value=1.7e-40 Score=343.97 Aligned_cols=161 Identities=29% Similarity=0.470 Sum_probs=134.3
Q ss_pred CCCccceeecccCCCCCcchhHH------hH----HHHHHhh------------ccCCCH---HHHHHHHhhcCCccccC
Q psy1206 7 DPDEDGLVKYLCGDKNFAEDRIR------NG----AKKLLKA------------RSSTTQ---GRLDSFFTIRREEKRKA 61 (531)
Q Consensus 7 ~~d~~~~~a~~~~~~~f~~~~~R------~~----~~~~~k~------------~~~~t~---~~i~~lL~~~gIp~vvA 61 (531)
.|.+ .++.||.+.++|+++... .+ +...+++ ...+|+ +.++++|+++|||+++|
T Consensus 71 ~~i~-pv~VFDG~~~~~K~~~~~~R~~~r~~~~~~~~~~yk~g~~~~~~~~~~~~~~vt~~~~~~~~~lL~~~gip~i~a 149 (340)
T 1b43_A 71 AGIK-PVYVFDGEPPEFKKKELEKRREAREEAEEKWREALEKGEIEEARKYAQRATRVNEMLIEDAKKLLELMGIPIVQA 149 (340)
T ss_dssp TTCE-EEEEECCSCCCCSSCSSTTCCCCTTHHHHHHHHHHHHSCHHHHHHHHHTSGGGTHHHHHHHHHHHHHHTCCEEEC
T ss_pred CCCE-EEEEecCCCchhhhhhHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCcEEEc
Confidence 5666 899999998999865432 11 1112333 233444 45789999999999999
Q ss_pred CCchhHHHHHHHHcCCEEEEEcCCCccccccCCeEEEeccccCcccC---------CcEEecHHHHHHhCCCCHHHHHHH
Q psy1206 62 PCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKL---------PVQEFHLEKVLEGMELSHEEFIDL 132 (531)
Q Consensus 62 PyEADAq~A~L~r~G~vd~ViSeDsDlL~fg~~~Vi~~l~~~~~~~~---------~v~~~~~~~i~~~lglt~eqfid~ 132 (531)
|||||||||+|+++|++++|+|+|+|+|+||+++|+++++.+|..+. .++.++.+.+.+.+|++++||+|+
T Consensus 150 p~EADa~iA~La~~g~~~~i~S~D~D~l~~g~~~v~~~~~~~~~~~~p~~~~~v~~~~~~~~~~~v~~~~gl~~~q~id~ 229 (340)
T 1b43_A 150 PSEGEAQAAYMAAKGSVYASASQDYDSLLFGAPRLVRNLTITGKRKLPGKNVYVEIKPELIILEEVLKELKLTREKLIEL 229 (340)
T ss_dssp SSCHHHHHHHHHHHTSSSEEECSSSHHHHTTCSEEEESTTTCEEEECTTSSCEEEECCEEEEHHHHHHHHTCCHHHHHHH
T ss_pred ChhHHHHHHHHHHcCCEEEEEccCCCcceecCcEEEEEeccCCCccCcccccccccceeEEEHHHHHHHhCCCHHHHHHH
Confidence 99999999999999999999999999999999999999876653322 346799999999999999999999
Q ss_pred HhHcCCCCCC-CCCCccHHHHHHHHHHcCCHHHHHHH
Q psy1206 133 CILLGCDYCD-SIRGIGPKRAIELIKEHRSIEKILEN 168 (531)
Q Consensus 133 ~iL~G~DY~p-GIpGIG~ktA~kLI~~~~sle~il~~ 168 (531)
|+|+||||+| ||||||+|||++||++|+|+++++++
T Consensus 230 ~~L~G~Dy~p~gv~GiG~ktA~kli~~~gsle~il~~ 266 (340)
T 1b43_A 230 AILVGTDYNPGGIKGIGLKKALEIVRHSKDPLAKFQK 266 (340)
T ss_dssp HHHHCCTTSTTCSTTCCHHHHHHHHHTCSSGGGGTGG
T ss_pred HHhcCCCCCCCCCCCccHHHHHHHHHHcCCHHHHHcC
Confidence 9999999999 99999999999999999998876543
No 2
>3ory_A Flap endonuclease 1; hydrolase; 2.00A {Desulfurococcus amylolyticus}
Probab=100.00 E-value=1.3e-40 Score=347.97 Aligned_cols=157 Identities=35% Similarity=0.518 Sum_probs=132.1
Q ss_pred eeecccCCCCCcchhH------HhHH----------------HHHHhhccCCCH---HHHHHHHhhcCCccccCCCchhH
Q psy1206 13 LVKYLCGDKNFAEDRI------RNGA----------------KKLLKARSSTTQ---GRLDSFFTIRREEKRKAPCEAEA 67 (531)
Q Consensus 13 ~~a~~~~~~~f~~~~~------R~~~----------------~~~~k~~~~~t~---~~i~~lL~~~gIp~vvAPyEADA 67 (531)
++.||.+.++|+++.+ |..+ .+++.+...+|+ +.++++|+++|||+++||+||||
T Consensus 90 v~VFDg~~p~~K~~~~~~yK~~R~~~~e~l~~~~~~g~~~~a~~~~~~~~~vt~~~~~~i~~lL~~~GIp~i~apgEADa 169 (363)
T 3ory_A 90 VYVFDGKPPELKAREIERRKAVKEEAAKKYEEAVQSGDLELARRYAMMSAKLTEEMVRDAKSLLDAMGIPWVQAPAEGEA 169 (363)
T ss_dssp EEEECSSCGGGCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHTCCCCCCCHHHHHHHHHHHHHHTCCEEECSSCHHH
T ss_pred EEEEcCCCccchHHHHHHHHHhhhhchHHHHHHHHcCCHHHHHHHHhccccCCHHHHHHHHHHHHHCCCCEEEeCccHHH
Confidence 5679999999975542 1111 112233445565 56789999999999999999999
Q ss_pred HHHHHHHcCCEEEEEcCCCccccccCCeEEEeccccCcccC---------CcEEecHHHHHHhCCCCHHHHHHHHhHcCC
Q psy1206 68 QCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKL---------PVQEFHLEKVLEGMELSHEEFIDLCILLGC 138 (531)
Q Consensus 68 q~A~L~r~G~vd~ViSeDsDlL~fg~~~Vi~~l~~~~~~~~---------~v~~~~~~~i~~~lglt~eqfid~~iL~G~ 138 (531)
|||+|++.|++++|+|+|+|+|+||+++|+++++..+.++. ..+.++.+.+.+.+|++++||+|+|+|+||
T Consensus 170 qiA~La~~g~~~~I~S~D~D~l~fg~~~v~~~l~~~~~~~~p~~~~~v~~~~~~~~~~~v~~~~gl~~~q~id~~~L~Gs 249 (363)
T 3ory_A 170 QAAYIVKKGDAYASASQDYDSLLFGSPKLVRNLTISGRRKLPRKNEYVEVKPELIELDKLLVQLGITLENLIDIGILLGT 249 (363)
T ss_dssp HHHHHHHTTSCSEEECSSSHHHHTTCSEEEESTTTCEEEECSSTTCEEEECCEEEEHHHHHHHHTCCHHHHHHHHHHHCB
T ss_pred HHHHHHHCCCeEEEECCCcCccccCCCeEEEEeeccccccCCccccccccceEEEcHHHHHHHhCcCHHHHHHHHHHhCC
Confidence 99999999999999999999999999999999876543211 246899999999999999999999999999
Q ss_pred CCCC-CCCCccHHHHHHHHHHcCCHHHHHHHh
Q psy1206 139 DYCD-SIRGIGPKRAIELIKEHRSIEKILENI 169 (531)
Q Consensus 139 DY~p-GIpGIG~ktA~kLI~~~~sle~il~~l 169 (531)
||+| ||||||+|||++||++|||+|+|++++
T Consensus 250 Dy~p~GVpGIG~KtA~kLl~~~gsle~il~~~ 281 (363)
T 3ory_A 250 DYNPDGFEGIGPKKALQLVKAYGGIEKIPKPI 281 (363)
T ss_dssp TTBTTCSTTCCHHHHHHHHHHHTSSTTSCGGG
T ss_pred CCCCCCCCCcCHHHHHHHHHHcCCHHHHHHhc
Confidence 9999 999999999999999999999887765
No 3
>3q8k_A Flap endonuclease 1; helix-3 turn-helix, hydrophobic wedge, 3' flap binding site, hydrolase-DNA complex, DNA repair, replication; HET: DNA; 2.20A {Homo sapiens} PDB: 3q8l_A* 3q8m_A*
Probab=100.00 E-value=6.9e-40 Score=339.95 Aligned_cols=236 Identities=50% Similarity=0.905 Sum_probs=200.1
Q ss_pred eeecccCCCCCcchhHHh------H----------------HHHHHhhccCCCH---HHHHHHHhhcCCccccCCCchhH
Q psy1206 13 LVKYLCGDKNFAEDRIRN------G----------------AKKLLKARSSTTQ---GRLDSFFTIRREEKRKAPCEAEA 67 (531)
Q Consensus 13 ~~a~~~~~~~f~~~~~R~------~----------------~~~~~k~~~~~t~---~~i~~lL~~~gIp~vvAPyEADA 67 (531)
...||.+.++|+++..-. . +.++.++...+|+ +.++++|+++|||+++|||||||
T Consensus 81 ~~VFDg~~~~~r~~~~~~yk~~R~~~~~~~~~a~r~~~pe~l~~~~~~~~~vt~~q~~~~~~lL~~~gip~i~ap~EADd 160 (341)
T 3q8k_A 81 VYVFDGKPPQLKSGELAKRSERRAEAEKQLQQAQAAGAEQEVEKFTKRLVKVTKQHNDECKHLLSLMGIPYLDAPSEAEA 160 (341)
T ss_dssp EEEECCCCCGGGHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHTCCCCHHHHHHHHHHHHHHTCCEEECSSCHHH
T ss_pred eEEEeCCCcccchhhhHHHHHHHhHhHHHHHHHHhcCCHHHHHHHHhhcccCCHHHHHHHHHHHHHcCCCEEECCccHHH
Confidence 336999999997554211 1 1112233334444 45789999999999999999999
Q ss_pred HHHHHHHcCCEEEEEcCCCccccccCCeEEEeccccCcccCCcEEecHHHHHHhCCCCHHHHHHHHhHcCCCCCCCCCCc
Q psy1206 68 QCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVLEGMELSHEEFIDLCILLGCDYCDSIRGI 147 (531)
Q Consensus 68 q~A~L~r~G~vd~ViSeDsDlL~fg~~~Vi~~l~~~~~~~~~v~~~~~~~i~~~lglt~eqfid~~iL~G~DY~pGIpGI 147 (531)
|||+|++.|.+++|+|+|+|+|+||+++|++++++++.++.++..++.+.+.+.+|++|+||+|+++|+||||+||||||
T Consensus 161 ~ia~La~~g~v~~i~s~D~D~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~v~~~~gl~~~q~id~~~L~G~D~~~gipGi 240 (341)
T 3q8k_A 161 SCAALVKAGKVYAAATEDMDCLTFGSPVLMRHLTASEAKKLPIQEFHLSRILQELGLNQEQFVDLCILLGSDYCESIRGI 240 (341)
T ss_dssp HHHHHHHTTSSSEEECSCTHHHHTTCSEEEESCCCCSSCCCEEEEEEHHHHHHHHTCCHHHHHHHHHHHCCSSSCCCTTC
T ss_pred HHHHHHhcCCeEEEEcCCccccccCCcEEEEcccccccCCCceEEEcHHHHHHHhCCCHHHHHHHHHhcCCCCCCCCCCc
Confidence 99999999999999999999999999999999876544444578899999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHcCCHHHHHHHhhhcCCCCCCCCcHHHHHHHhcCCCcCCCCCcccccccccccccccccccCCChhhhHh
Q psy1206 148 GPKRAIELIKEHRSIEKILENIDTKKYTVPEGWLYKEARELFRHPEVADPETIEFIDLCILLGCDYCDSIRGIGPKRAIE 227 (531)
Q Consensus 148 G~ktA~kLI~~~~sle~il~~l~~~~~~ip~~f~~~~A~~~f~~p~V~d~~~~~~v~Ls~~~~~d~cesl~~~Gp~~~~e 227 (531)
|+|||++||++|||+|+|+++++.
T Consensus 241 G~KtA~kll~~~gsle~i~~~~~~-------------------------------------------------------- 264 (341)
T 3q8k_A 241 GPKRAVDLIQKHKSIEEIVRRLDP-------------------------------------------------------- 264 (341)
T ss_dssp CHHHHHHHHHHHCSHHHHHHHSCT--------------------------------------------------------
T ss_pred cHHHHHHHHHHcCCHHHHHHHHHh--------------------------------------------------------
Confidence 999999999999999999988631
Q ss_pred HHhhhhhhhhhccCccccCCCCCchHHHHHHHHhhccHHHHHHHHhhCCCCCCCcchHHHHHHHhcCCcccCcccccccc
Q psy1206 228 LLYSFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGWLYKEARELFRHPEIADPETIELVA 307 (531)
Q Consensus 228 l~e~F~~~CiLsGCDY~~~i~giG~k~A~kli~k~~s~~~vi~~l~~~~~~vP~~y~~~~A~~~F~~~~V~dP~~~~Lv~ 307 (531)
.+.++|++|++.+|+.+|+||.|++|.+
T Consensus 265 -----------------------------------------------~k~~~~~~~~~~~~r~l~l~~~V~~~~~----- 292 (341)
T 3q8k_A 265 -----------------------------------------------NKYPVPENWLHKEAHQLFLEPEVLDPES----- 292 (341)
T ss_dssp -----------------------------------------------TTSCCCTTCCHHHHHHHHHSCCCCCTTT-----
T ss_pred -----------------------------------------------cCCCCCcccchHHHHHHhCCCCCCCCcc-----
Confidence 1236788888999999999999998832
Q ss_pred ccCCCcccccceeeecccchHHHHHHHHhhcCccccCCCCCCcchhhhHHHHHHHHHHcCCeeEEeecCCCCCcchHHHH
Q psy1206 308 DVAPSSIRESRKICIDASMSLYQFLIAVRSEGNQLMSVDGEPTSHLMGTFYRTIRLVEHGLKPIYVFDGKPPTLKSGELN 387 (531)
Q Consensus 308 ~~aP~~i~~gk~iAIDa~~~lyqfl~~ir~~g~~l~~~~g~~tshl~g~~~R~~~ll~~gIkPVfVFDG~pp~lK~~~~~ 387 (531)
T Consensus 293 -------------------------------------------------------------------------------- 292 (341)
T 3q8k_A 293 -------------------------------------------------------------------------------- 292 (341)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHHHHcccccCCCCChhHHHHHHhhccccchHHHHHHHHHHHHHhccCCcCccccccc
Q psy1206 388 KRMEKREDAQKALAKAQEQGKLKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSTTTQGRLDSFFT 458 (531)
Q Consensus 388 kR~~~r~~a~~~~~~a~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~rld~ff~ 458 (531)
.++.|..||.+++++|++.+..|..++|.+.+++|.++++ |+.||+||.
T Consensus 293 -------------------~~l~~~~pd~~~l~~fl~~~~~f~~~rv~~~~~~l~~~~~---~~~l~~~~~ 341 (341)
T 3q8k_A 293 -------------------VELKWSEPNEEELIKFMCGEKQFSEERIRSGVKRLSKSRQ---GSTLEVLFQ 341 (341)
T ss_dssp -------------------SCCCCCCCCHHHHHHHHTTTTCCCHHHHHHHHHHHHHHHH---HHCCCCCCC
T ss_pred -------------------cccCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhc---cCcHhhhcC
Confidence 2468999999999999977799999999999999999987 788999994
No 4
>1ul1_X Flap endonuclease-1; protein complex, DNA-binding protein, flap DNA, flap endonuclease, sliding clamp, DNA clamp; 2.90A {Homo sapiens} SCOP: a.60.7.1 c.120.1.2
Probab=100.00 E-value=7.8e-40 Score=343.89 Aligned_cols=210 Identities=58% Similarity=1.048 Sum_probs=189.0
Q ss_pred HHHHHHHhhcCCccccCCCchhHHHHHHHHcCCEEEEEcCCCccccccCCeEEEeccccCcccCCcEEecHHHHHHhCCC
Q psy1206 45 GRLDSFFTIRREEKRKAPCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVLEGMEL 124 (531)
Q Consensus 45 ~~i~~lL~~~gIp~vvAPyEADAq~A~L~r~G~vd~ViSeDsDlL~fg~~~Vi~~l~~~~~~~~~v~~~~~~~i~~~lgl 124 (531)
+.++++|+++||||++||||||||||+|++.|.+++|+|+|+|+|+||+++|++++++++..+.++..++.+.+.+.+|+
T Consensus 138 ~~~~~lL~~~Gi~~i~apgEADd~iA~La~~g~~~~iiS~D~Dll~~g~~~v~~~~~~~~~~k~~~~~~~~~~v~~~~gl 217 (379)
T 1ul1_X 138 DECKHLLSLMGIPYLDAPSEAEASCAALVKAGKVYAAATEDMDCLTFGSPVLMRHLTASEAKKLPIQEFHLSRILQELGL 217 (379)
T ss_dssp HHHHHHHHHHTCCEEECSSCHHHHHHHHHHHTSSSEEECSCTHHHHTTCSEEEECSSCCC-CCCCEEEEEHHHHHHHHTC
T ss_pred HHHHHHHHHcCCCeecCCCcHHHHHHHHHhcCCeEEEEecCcCccccccceEEEEecccccCcCCeEEEeHHHHHHHhCC
Confidence 67899999999999999999999999999999999999999999999999999998765433356889999999999999
Q ss_pred CHHHHHHHHhHcCCCCCCCCCCccHHHHHHHHHHcCCHHHHHHHhhhcCCCCCCCCcHHHHHHHhcCCCcCCCCCccccc
Q psy1206 125 SHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGWLYKEARELFRHPEVADPETIEFID 204 (531)
Q Consensus 125 t~eqfid~~iL~G~DY~pGIpGIG~ktA~kLI~~~~sle~il~~l~~~~~~ip~~f~~~~A~~~f~~p~V~d~~~~~~v~ 204 (531)
+++||+|+|+|+||||++||||||+|||++||++|+|+|+|+++++..
T Consensus 218 ~~~q~id~~~L~G~D~~d~IpGIG~KtA~kLl~~~gsle~i~~~~~~~-------------------------------- 265 (379)
T 1ul1_X 218 NQEQFVDLCILLGSDYCESIRGIGPKRAVDLIQKHKSIEEIVRRLDPN-------------------------------- 265 (379)
T ss_dssp CHHHHHHHHHHHHCSSSCCCTTCCHHHHHHHHHHSSSHHHHHTTCCCT--------------------------------
T ss_pred CHHHHHHHHHHhCCCcCCCCCCcCHHHHHHHHHHcCCHHHHHHHHHhh--------------------------------
Confidence 999999999999999999999999999999999999999998776320
Q ss_pred ccccccccccccccCCChhhhHhHHhhhhhhhhhccCccccCCCCCchHHHHHHHHhhccHHHHHHHHhhCCCCCCCcch
Q psy1206 205 LCILLGCDYCDSIRGIGPKRAIELLYSFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGWL 284 (531)
Q Consensus 205 Ls~~~~~d~cesl~~~Gp~~~~el~e~F~~~CiLsGCDY~~~i~giG~k~A~kli~k~~s~~~vi~~l~~~~~~vP~~y~ 284 (531)
+..+|++|.
T Consensus 266 -----------------------------------------------------------------------k~~~~~~~~ 274 (379)
T 1ul1_X 266 -----------------------------------------------------------------------KYPVPENWL 274 (379)
T ss_dssp -----------------------------------------------------------------------TSCCCSSCC
T ss_pred -----------------------------------------------------------------------cccCCCcCC
Confidence 124688888
Q ss_pred HHHHHHHhcCCcccCccccccccccCCCcccccceeeecccchHHHHHHHHhhcCccccCCCCCCcchhhhHHHHHHHHH
Q psy1206 285 YKEARELFRHPEIADPETIELVADVAPSSIRESRKICIDASMSLYQFLIAVRSEGNQLMSVDGEPTSHLMGTFYRTIRLV 364 (531)
Q Consensus 285 ~~~A~~~F~~~~V~dP~~~~Lv~~~aP~~i~~gk~iAIDa~~~lyqfl~~ir~~g~~l~~~~g~~tshl~g~~~R~~~ll 364 (531)
+.+|+.+|+|+.|++|.+
T Consensus 275 ~~~ar~l~l~~~v~~~~~-------------------------------------------------------------- 292 (379)
T 1ul1_X 275 HKEAHQLFLEPEVLDPES-------------------------------------------------------------- 292 (379)
T ss_dssp HHHHHHHHHSCCCCCGGG--------------------------------------------------------------
T ss_pred HHHHHHHhcCCeeCCCCC--------------------------------------------------------------
Confidence 888999999999998731
Q ss_pred HcCCeeEEeecCCCCCcchHHHHHHHHHHHHHHHHHHHHHHcccccCCCCChhHHHHHHhhccccchHHHHHHHHHHHHH
Q psy1206 365 EHGLKPIYVFDGKPPTLKSGELNKRMEKREDAQKALAKAQEQGKLKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKA 444 (531)
Q Consensus 365 ~~gIkPVfVFDG~pp~lK~~~~~kR~~~r~~a~~~~~~a~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ 444 (531)
. ++.|..||.+++++|+.++..|..+++.+.+.+|.++
T Consensus 293 -----------------------------------------~-~l~~~~pd~~~l~~fl~~~~~f~~~rv~~~~~rl~~~ 330 (379)
T 1ul1_X 293 -----------------------------------------V-ELKWSEPNEEELIKFMCGEKQFSEERIRSGVKRLSKS 330 (379)
T ss_dssp -----------------------------------------C-CCCCCCCCHHHHHHHTTTTSCCCHHHHHHHHHHHHHH
T ss_pred -----------------------------------------c-cCCCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHh
Confidence 1 4679999999999998887999999999999999999
Q ss_pred hccCCcCccccccccch
Q psy1206 445 RSTTTQGRLDSFFTIRR 461 (531)
Q Consensus 445 ~~~~~~~rld~ff~~~~ 461 (531)
+++.+|+|||+||++.+
T Consensus 331 ~~~~~q~~l~~ff~~~~ 347 (379)
T 1ul1_X 331 RQGSTQGRLDDFFKVTG 347 (379)
T ss_dssp HSCCSBCCHHHHSEEEE
T ss_pred hccCCCCcHHhhcCCCC
Confidence 99999999999999875
No 5
>2izo_A FEN1, flap structure-specific endonuclease; hydrolase, DNA repair, DNA-binding, endonuclease, metal-BIND excision repair, DNA replication, PCNA; HET: DNA; 2.9A {Sulfolobus solfataricus}
Probab=100.00 E-value=2.6e-39 Score=336.04 Aligned_cols=125 Identities=36% Similarity=0.560 Sum_probs=107.3
Q ss_pred HHHHHHHhhcCCccccCCCchhHHHHHHHHcCCEEEEEcCCCccccccCCeEEEeccccCcccC---------CcEEecH
Q psy1206 45 GRLDSFFTIRREEKRKAPCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKL---------PVQEFHL 115 (531)
Q Consensus 45 ~~i~~lL~~~gIp~vvAPyEADAq~A~L~r~G~vd~ViSeDsDlL~fg~~~Vi~~l~~~~~~~~---------~v~~~~~ 115 (531)
+.++++|+++|||+++||||||||||+|++.|++++|+|+|+|+|+||+++|+++++.+|.++. .++.++.
T Consensus 130 ~~~~~lL~~~gi~~i~ap~EADa~ia~La~~g~~~~I~S~D~D~l~~~~~~v~~~~~~~~~~~~p~~~~~~~~~~~~~~~ 209 (346)
T 2izo_A 130 EESKKLLRAMGIPIVQAPSEGEAEAAYLNKLGLSWAAASQDYDAILFGAKRLVRNLTITGKRKLPNKDVYVEIKPELIET 209 (346)
T ss_dssp HHHHHHHHHHTCCEEECSSCHHHHHHHHHHTTSSSEEECSSSHHHHTTCSEEEESSCC-----------CCCCCCEEEEH
T ss_pred HHHHHHHHHCCCCEEEcCCcHHHHHHHHHhCCCeEEEECCCCCcceecCCeEEEEecccccccCcccccccccceEEEEH
Confidence 4678999999999999999999999999999999999999999999999999999876543211 3567999
Q ss_pred HHHHHhCCCCHHHHHHHHhHcCCCCCC-CCCCccHHHHHHHHHHcCCHHHHHHHh
Q psy1206 116 EKVLEGMELSHEEFIDLCILLGCDYCD-SIRGIGPKRAIELIKEHRSIEKILENI 169 (531)
Q Consensus 116 ~~i~~~lglt~eqfid~~iL~G~DY~p-GIpGIG~ktA~kLI~~~~sle~il~~l 169 (531)
+.+.+.+|+++++|+|+|+|+||||+| ||||||+|||++||++|+|+|+|++++
T Consensus 210 ~~v~~~~gl~~~q~id~~~L~G~D~~p~Gv~GIG~KtA~kLi~~~gsle~i~~~~ 264 (346)
T 2izo_A 210 EILLKKLGITREQLIDIGILIGTDYNPDGIRGIGPERALKIIKKYGKIEKAMEYG 264 (346)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHCCSSSTTCSTTCCHHHHHHHHHHSSCC-------
T ss_pred HHHHHHcCCCHHHHHHHHHHcCCCCCCCCCCCcCHHHHHHHHHHcCCHHHHHHHH
Confidence 999999999999999999999999999 999999999999999999999998876
No 6
>3qe9_Y Exonuclease 1; exonuclease, hydrolase-DNA complex; HET: DNA; 2.51A {Homo sapiens} PDB: 3qeb_Z* 3qea_Z*
Probab=100.00 E-value=6e-39 Score=334.16 Aligned_cols=214 Identities=25% Similarity=0.306 Sum_probs=178.6
Q ss_pred ccceeecccCCCCCcchhH--Hh--------------------HHHHHHhhccCCCH---HHHHHHHhhcCCccccCCCc
Q psy1206 10 EDGLVKYLCGDKNFAEDRI--RN--------------------GAKKLLKARSSTTQ---GRLDSFFTIRREEKRKAPCE 64 (531)
Q Consensus 10 ~~~~~a~~~~~~~f~~~~~--R~--------------------~~~~~~k~~~~~t~---~~i~~lL~~~gIp~vvAPyE 64 (531)
..-++-||.+....++.+. |. ++.+.+++...+|+ +.++++|+++|||+++||||
T Consensus 71 I~PvfVFDG~~~p~Kk~~~~~Rr~~r~~~~~~~~~~~~~g~~~~a~~~f~~~~~vt~~~~~~i~~~L~~~gIp~i~ap~E 150 (352)
T 3qe9_Y 71 IKPILVFDGCTLPSKKEVERSRRERRQANLLKGKQLLREGKVSEARECFTRSINITHAMAHKVIKAARSQGVDCLVAPYE 150 (352)
T ss_dssp CEEEEEECCSCCTTTHHHHHHHHHHHHHHHHHHHHHTTSSCCHHHHHHHGGGCCCCHHHHHHHHHHHHHTTCEEEECSSC
T ss_pred CEEEEEECCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCCcEEECCcc
Confidence 3457779988766665532 11 12234555556777 45788999999999999999
Q ss_pred hhHHHHHHHHcCCEEEEEcCCCccccccCCeEEEeccccCcccCCcEEecHHHH--HHhCC--CCHHHHHHHHhHcCCCC
Q psy1206 65 AEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKV--LEGME--LSHEEFIDLCILLGCDY 140 (531)
Q Consensus 65 ADAq~A~L~r~G~vd~ViSeDsDlL~fg~~~Vi~~l~~~~~~~~~v~~~~~~~i--~~~lg--lt~eqfid~~iL~G~DY 140 (531)
||||||+|+++|++++|+|+|+|+|+||+++|+++++..+.. ..++.+.+ .+.+| ++++||+|+|+|+||||
T Consensus 151 ADaqiA~La~~g~~~~I~S~D~Dll~~~~~~v~~~~~~~~~~----~~~~~~~~~~~~~~g~~l~~~q~id~~~L~G~D~ 226 (352)
T 3qe9_Y 151 ADAQLAYLNKAGIVQAIITEDSALLAFGCKKVILKMDQFGNG----LEIDQARLGMCRQLGDVFTEEKFRYMCILSGCDY 226 (352)
T ss_dssp HHHHHHHHHHTTSCSEEECSCGGGGGGTCSEEEESCCTTSEE----EEEEGGGGTTCCTTCSSCCHHHHHHHHHHHCCSS
T ss_pred hHHHHHHHHHCCCeEEEEeCCcCcccccCCeEEEeccCCCCc----EEEeHHHHHHHHHhCCCCCHHHHHHHHHhcCCCC
Confidence 999999999999999999999999999999999988765432 34666664 57888 99999999999999999
Q ss_pred CCCCCCccHHHHHHHHHHc--CCHHHHHHHhhh---cCCCCCCCCc--HHHHHHHhcCCCcCCCCCcccccccccccccc
Q psy1206 141 CDSIRGIGPKRAIELIKEH--RSIEKILENIDT---KKYTVPEGWL--YKEARELFRHPEVADPETIEFIDLCILLGCDY 213 (531)
Q Consensus 141 ~pGIpGIG~ktA~kLI~~~--~sle~il~~l~~---~~~~ip~~f~--~~~A~~~f~~p~V~d~~~~~~v~Ls~~~~~d~ 213 (531)
+|||||||+|||++||++| +|++++++++.+ .+..+|++|. |.+|+.+|+||.||||.++++++|++.+....
T Consensus 227 ~pgv~GiG~ktA~kli~~~~~~~l~~il~~~~~~l~~~~~vp~~~~~~~~~A~~~F~~q~V~dp~~~~~~~l~~~~~~~~ 306 (352)
T 3qe9_Y 227 LSSLRGIGLAKACKVLRLANNPDIVKVIKKIGHYLKMNITVPEDYINGFIRANNTFLYQLVFDPIKRKLIPLNAYEDDVD 306 (352)
T ss_dssp SCCCTTCCHHHHHHHHHHCCCSCHHHHHTTHHHHHTCCCCCCHHHHHHHHHHHHHHHHCEEEETTTTEEEESSCCCSSCC
T ss_pred CCCCCCeeHHHHHHHHHHhCCCCHHHHHHHHHhhhccCCCCCHHHHHHHHHHHHHhCCCEEECCCCCeEeeCCCCCCCCC
Confidence 9999999999999999999 699999999875 3578999997 99999999999999999999999999887666
Q ss_pred cccccCCChhhhHh
Q psy1206 214 CDSIRGIGPKRAIE 227 (531)
Q Consensus 214 cesl~~~Gp~~~~e 227 (531)
.+.+.++|+...++
T Consensus 307 ~~~~~~~G~~~~~~ 320 (352)
T 3qe9_Y 307 PETLSYAGQYVDDS 320 (352)
T ss_dssp GGGCCTTCCCCCHH
T ss_pred hhhhhhcCCCCCHH
Confidence 66677888766554
No 7
>1a76_A Flap endonuclease-1 protein; 5'-3' EXO/endo nuclease, DNA replication, RTH, RAD27, DNA repair; 2.00A {Methanocaldococcus jannaschii} SCOP: a.60.7.1 c.120.1.2 PDB: 1a77_A
Probab=100.00 E-value=1.9e-37 Score=319.42 Aligned_cols=155 Identities=28% Similarity=0.445 Sum_probs=132.1
Q ss_pred cceeecccCCCCCcchhHHh----------------------HHHHHHhhccCCCH---HHHHHHHhhcCCccccCCCch
Q psy1206 11 DGLVKYLCGDKNFAEDRIRN----------------------GAKKLLKARSSTTQ---GRLDSFFTIRREEKRKAPCEA 65 (531)
Q Consensus 11 ~~~~a~~~~~~~f~~~~~R~----------------------~~~~~~k~~~~~t~---~~i~~lL~~~gIp~vvAPyEA 65 (531)
.-+++||.+.++|+++.... ++.++.++...+|+ +.++++|+++|||+++|||||
T Consensus 74 ~Pv~vFDG~~~~~k~~~~~~yk~~R~~~~~~l~~~~~~g~~~~a~~~~~~~~~vt~~~~~~~~~lL~~~gi~~i~apgEA 153 (326)
T 1a76_A 74 TPIWVFDGEPPKLKEKTRKVRREMKEKAELKMKEAIKKEDFEEAAKYAKRVSYLTPKMVENCKYLLSLMGIPYVEAPSEG 153 (326)
T ss_dssp EEEEEECCCSSCCCCSSCCSSCSSSCSSCSCCCCCCSHHHHHTTSTTGGGGCSSCHHHHHHHHHHHHHHTCCEEECSSCH
T ss_pred eEEEEEeCcCcccchhhHHHHHHHHHhhHHHHHHHHHcCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCCeEECCccH
Confidence 34899998888887553210 01112233334454 568899999999999999999
Q ss_pred hHHHHHHHHcCCEEEEEcCCCccccccCCeEEEeccccCcccCCcEEecHHHHHHhCCCCHHHHHHHHhHcCCCCCC-CC
Q psy1206 66 EAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVLEGMELSHEEFIDLCILLGCDYCD-SI 144 (531)
Q Consensus 66 DAq~A~L~r~G~vd~ViSeDsDlL~fg~~~Vi~~l~~~~~~~~~v~~~~~~~i~~~lglt~eqfid~~iL~G~DY~p-GI 144 (531)
|||||+|+++|++++|+|+|+|+|+||+++|+++++.++. .++.++.+.+.+.+|++++||+|+|+|+||||+| ||
T Consensus 154 D~~ia~La~~g~~~~I~S~D~Dll~~~~~~v~~~~~~~~~---~~~~~~~~~v~~~~gl~~~q~id~~~L~GsD~~p~Gv 230 (326)
T 1a76_A 154 EAQASYMAKKGDVWAVVSQDYDALLYGAPRVVRNLTTTKE---MPELIELNEVLEDLRISLDDLIDIAIFMGTDYNPGGV 230 (326)
T ss_dssp HHHHHHHHHTTSSSEEECSSSGGGGGTCSEEEESSSSCSS---CCEEEEHHHHHHHHTCCHHHHHHHHHHHCCTTSTTTT
T ss_pred HHHHHHHHHCCCEEEEecCCcccceecCCEEEEeecCCCC---ceEEEEHHHHHHHcCCCHHHHHHHHHHcCCCCCCCCC
Confidence 9999999999999999999999999999999999876653 5789999999999999999999999999999999 99
Q ss_pred CCccHHHHHHHHHHcCCHHHHH-HHh
Q psy1206 145 RGIGPKRAIELIKEHRSIEKIL-ENI 169 (531)
Q Consensus 145 pGIG~ktA~kLI~~~~sle~il-~~l 169 (531)
||||+|||++||++ +|+++++ +++
T Consensus 231 pGiG~ktA~kli~~-gsle~i~~~~~ 255 (326)
T 1a76_A 231 KGIGFKRAYELVRS-GVAKDVLKKEV 255 (326)
T ss_dssp TTCCHHHHHHHHHH-TCHHHHHHHHS
T ss_pred CCcCHHHHHHHHHc-CCHHHHHHHHH
Confidence 99999999999999 9999998 764
No 8
>1rxw_A Flap structure-specific endonuclease; helical clamp, helix-3 turn-helix, hydrophobic wedge, 3' FLA site, hydrolase-DNA complex; 2.00A {Archaeoglobus fulgidus} SCOP: a.60.7.1 c.120.1.2 PDB: 1rxv_A
Probab=100.00 E-value=1.3e-33 Score=291.94 Aligned_cols=188 Identities=30% Similarity=0.458 Sum_probs=150.2
Q ss_pred eeecccCCCCCcchhH------HhH---------------HHHHHhhccCCCH---HHHHHHHhhcCCccccCCCchhHH
Q psy1206 13 LVKYLCGDKNFAEDRI------RNG---------------AKKLLKARSSTTQ---GRLDSFFTIRREEKRKAPCEAEAQ 68 (531)
Q Consensus 13 ~~a~~~~~~~f~~~~~------R~~---------------~~~~~k~~~~~t~---~~i~~lL~~~gIp~vvAPyEADAq 68 (531)
+++||.+.++|+++.. |.. +..+.++...+|+ +.++++|+++|||+++||+|||||
T Consensus 76 v~vFDg~~~~~R~~~~~~yk~~R~~~~~~~~~~~~~g~~~l~~~~~~~~~vt~~~~~~~~~lL~~~gi~~i~apgeAEA~ 155 (336)
T 1rxw_A 76 VFVFDGEPPEFKKAEIEERKKRRAEAEEMWIAALQAGDKDAKKYAQAAGRVDEYIVDSAKTLLSYMGIPFVDAPSEGEAQ 155 (336)
T ss_dssp EEEECCSCCGGGHHHHHHHHHHHHHHHHHHHHHHHHTCTTHHHHHHHHCCCCHHHHHHHHHHHHHTTCCEEECSSCHHHH
T ss_pred EEEEcCCCCcccccchHHHHHHHHHHHHHHHHHHHhchHHHHHHHHhhccCCHHHHHHHHHHHHhCCCCEEEcCchHHHH
Confidence 8999988888875442 111 1122233344555 467899999999999999999999
Q ss_pred HHHHHHcCCEEEEEcCCCccccccCCeEEEeccccCccc---------CCcEEecHHHHHHhCCCCHHHHHHHHhHcCCC
Q psy1206 69 CAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARK---------LPVQEFHLEKVLEGMELSHEEFIDLCILLGCD 139 (531)
Q Consensus 69 ~A~L~r~G~vd~ViSeDsDlL~fg~~~Vi~~l~~~~~~~---------~~v~~~~~~~i~~~lglt~eqfid~~iL~G~D 139 (531)
||+|+++|++++|+|+|+|+++||+++|+++++..+..+ +.++.++.+.+.+.+|++|+||+|+|+|+|||
T Consensus 156 lA~la~~g~~~~I~S~D~Dllql~~~~v~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~gl~~~q~id~~~L~GsD 235 (336)
T 1rxw_A 156 AAYMAAKGDVEYTGSQDYDSLLFGSPRLARNLAITGKRKLPGKNVYVDVKPEIIILESNLKRLGLTREQLIDIAILVGTD 235 (336)
T ss_dssp HHHHHHTTSSSEEECSSSHHHHTTCSEEEESCCC-------------CCCCEEEEHHHHHHHHTCCHHHHHHHHHHHCBT
T ss_pred HHHHHHcCCeeEEEcCCCCcceecCCeEEEeccccccccCCccccccccceEEeEHHHHHHHcCCCHHHHHHHHhhcCCC
Confidence 999999999999999999999999999999887654211 14568999999999999999999999999999
Q ss_pred CCCCCCCccHHHHHHHHHHcCCHHHHHHHhhhcCCCCCCCCcHHHHHHHhcCCCcCCCCCccccccc
Q psy1206 140 YCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGWLYKEARELFRHPEVADPETIEFIDLC 206 (531)
Q Consensus 140 Y~pGIpGIG~ktA~kLI~~~~sle~il~~l~~~~~~ip~~f~~~~A~~~f~~p~V~d~~~~~~v~Ls 206 (531)
|+|||||||+|||++||++|||+|+|+++++. .++ + ..+++.+|.+|.|.+.+...|....
T Consensus 236 ~ipGv~GiG~KtA~kLl~~~gsle~i~~~~~~---~l~-~--~~~l~~i~~~~~v~~~~~~~~~~~d 296 (336)
T 1rxw_A 236 YNEGVKGVGVKKALNYIKTYGDIFRALKALKV---NID-H--VEEIRNFFLNPPVTDDYRIEFREPD 296 (336)
T ss_dssp TBCCCTTCCHHHHHHHHHHHSSHHHHHHHHTC----------CHHHHHHHHSCCCCCCCCCCCCCCC
T ss_pred CCCCCCCcCHHHHHHHHHHcCCHHHHHHhCCC---CCc-c--HHHHHHHHhCCCCCCcccccCCCCC
Confidence 99999999999999999999999999999863 122 1 3488889999999865555655443
No 9
>1exn_A 5'-exonuclease, 5'-nuclease; hydrolase; 2.50A {Enterobacteria phage T5} SCOP: a.60.7.1 c.120.1.2 PDB: 1ut5_A 1ut8_A 1xo1_A
Probab=99.95 E-value=5e-29 Score=253.00 Aligned_cols=153 Identities=21% Similarity=0.239 Sum_probs=134.3
Q ss_pred CCCccceeecccCCCCCcchhHHhHHHHHHhhccCCCH-------H--------HHHHHHhh--cCCccccCC-CchhHH
Q psy1206 7 DPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSSTTQ-------G--------RLDSFFTI--RREEKRKAP-CEAEAQ 68 (531)
Q Consensus 7 ~~d~~~~~a~~~~~~~f~~~~~R~~~~~~~k~~~~~t~-------~--------~i~~lL~~--~gIp~vvAP-yEADAq 68 (531)
.|++ .+++||.+.+ .+|++.++.||++|..+| + .++++|++ +|||++.+| |||||+
T Consensus 58 ~p~~-~vvvFD~~~~-----tfR~~~~~~YKa~R~~~p~~~~~~~e~L~~q~~~~ikell~~~~~gip~i~~~g~EADDv 131 (290)
T 1exn_A 58 SART-TIVLGDKGKS-----VFRLEHLPEYKGNRDEKYAQRTEEEKALDEQFFEYLKDAFELCKTTFPTFTIRGVEADDM 131 (290)
T ss_dssp TEEE-EEEECCBSCC-----HHHHHHCTTTTHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHHTTTSCEECCTTBCHHHH
T ss_pred CCCe-EEEEEcCCCc-----hhhhhCcHHHHcCCCCCCccccccchhHHHhhHHHHHHHHHhhCCCCcEEEECCcCHHHH
Confidence 6888 9999997643 567777777888887666 3 36888999 999999999 599999
Q ss_pred HHHHHHc----CCEEEEEcCCCccccccCCeE-EEeccccCcccCCcEEecHHHHHHhCCCCH-HHHHHHHhHcC--CCC
Q psy1206 69 CAAMVKA----GKVYATATEDMDALTFGSNIL-LRHMTFSEARKLPVQEFHLEKVLEGMELSH-EEFIDLCILLG--CDY 140 (531)
Q Consensus 69 ~A~L~r~----G~vd~ViSeDsDlL~fg~~~V-i~~l~~~~~~~~~v~~~~~~~i~~~lglt~-eqfid~~iL~G--~DY 140 (531)
||+|+++ |..+.|+|+|+|+++|++++| +++. . .+..++.+.+.+.+|++| +||+|+++|+| |||
T Consensus 132 iatLa~~~~~~G~~v~IvS~DkDl~Qlv~~~v~v~~~--~-----~~~~~~~~~v~ek~Gv~p~~q~iD~~~L~GD~sDn 204 (290)
T 1exn_A 132 AAYIVKLIGHLYDHVWLISTDGDWDTLLTDKVSRFSF--T-----TRREYHLRDMYEHHNVDDVEQFISLKAIMGDLGDN 204 (290)
T ss_dssp HHHHHHHHGGGSSCEEEECSCGGGGGGCCSSEEEEET--T-----TTEEECGGGHHHHHSSSSHHHHHHHHHHHCBGGGT
T ss_pred HHHHHHHHHHCCCcEEEEeCCCChhhcCCCCEEEEEC--C-----CCEEEcHHHHHHHcCCCHHHHHHHHHHhcCCCcCC
Confidence 9999986 888889999999999999987 4432 1 357899999999999999 99999999999 999
Q ss_pred CCCCCCccHHHHHHHHHHcCCHHHHHHHhhhc
Q psy1206 141 CDSIRGIGPKRAIELIKEHRSIEKILENIDTK 172 (531)
Q Consensus 141 ~pGIpGIG~ktA~kLI~~~~sle~il~~l~~~ 172 (531)
+|||||||+|||.+||++|||+|+|+++++..
T Consensus 205 iPGVpGIG~KTA~kLL~~~gsle~i~~~~~~~ 236 (290)
T 1exn_A 205 IRGVEGIGAKRGYNIIREFGNVLDIIDQLPLP 236 (290)
T ss_dssp BCCCTTCCHHHHHHHHHHHCSHHHHHHHCSCS
T ss_pred CCCCCcCCHhHHHHHHHHcCCHHHHHHHHHHh
Confidence 99999999999999999999999999999764
No 10
>3ory_A Flap endonuclease 1; hydrolase; 2.00A {Desulfurococcus amylolyticus}
Probab=99.92 E-value=2.9e-25 Score=232.03 Aligned_cols=124 Identities=43% Similarity=0.681 Sum_probs=120.5
Q ss_pred cccceeeecccchHHHHHHHHhh-cCccccCCCCCCcchhhhHHHHHHHHHHcCCeeEEeecCCCCCcchHHHHHHHHHH
Q psy1206 315 RESRKICIDASMSLYQFLIAVRS-EGNQLMSVDGEPTSHLMGTFYRTIRLVEHGLKPIYVFDGKPPTLKSGELNKRMEKR 393 (531)
Q Consensus 315 ~~gk~iAIDa~~~lyqfl~~ir~-~g~~l~~~~g~~tshl~g~~~R~~~ll~~gIkPVfVFDG~pp~lK~~~~~kR~~~r 393 (531)
..|++||||||+|||||+.++++ +|.+|++++|++|+|+.|+|+|+++|+++||+|||||||++|++|.++.++|+.+|
T Consensus 33 l~gk~l~IDg~~~l~r~~~~~~~~~g~~l~~~~G~~T~al~gf~~r~~~ll~~~i~Pv~VFDg~~p~~K~~~~~~yK~~R 112 (363)
T 3ory_A 33 LHGKIIVIDGYNALYQFLAAIRQPDGTPLMDNNGRITSHLSGLFYRTINIVEAGIKPVYVFDGKPPELKAREIERRKAVK 112 (363)
T ss_dssp GTTCEEEEEHHHHHHHHHHHCBCTTSCBCBCTTSCBCHHHHHHHHHHHHHHHTTCEEEEEECSSCGGGCHHHHHHHHHHH
T ss_pred hCCCEEEEehHHHHHHHHHhhhccCCCccCCCCCCCccHHHHHHHHHHHHHHcCCCcEEEEcCCCccchHHHHHHHHHhh
Confidence 66999999999999999999997 78999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcccccCCCCChhHHHHHHhhccccchHHHHHHHHHHHHHhc
Q psy1206 394 EDAQKALAKAQEQGKLKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARS 446 (531)
Q Consensus 394 ~~a~~~~~~a~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~ 446 (531)
+++.+++.+++++|+.+ ++++|+++ +..++++|+..+++||++||
T Consensus 113 ~~~~e~l~~~~~~g~~~-------~a~~~~~~-~~~vt~~~~~~i~~lL~~~G 157 (363)
T 3ory_A 113 EEAAKKYEEAVQSGDLE-------LARRYAMM-SAKLTEEMVRDAKSLLDAMG 157 (363)
T ss_dssp HHHHHHHHHHHHHTCHH-------HHHHHTCC-CCCCCHHHHHHHHHHHHHHT
T ss_pred hhchHHHHHHHHcCCHH-------HHHHHHhc-cccCCHHHHHHHHHHHHHCC
Confidence 99999999999999987 99999998 99999999999999999998
No 11
>1bgx_T TAQ DNA polymerase; DNA polymerase, FAB, PCR, inhibition, helix-coil dynamics, inhibitor design, complex (polymerase/inhibitor); 2.30A {Thermus aquaticus} SCOP: a.60.7.1 c.120.1.2 c.55.3.5 e.8.1.1 PDB: 1cmw_A 1tau_A* 1taq_A*
Probab=99.92 E-value=4.9e-27 Score=267.75 Aligned_cols=152 Identities=24% Similarity=0.280 Sum_probs=134.2
Q ss_pred CccceeecccCCCCCcchhHHhHHHHHHhhccCCCH-------HHHHHHHhhcCCccccCC-CchhHHHHHHHH----cC
Q psy1206 9 DEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSSTTQ-------GRLDSFFTIRREEKRKAP-CEAEAQCAAMVK----AG 76 (531)
Q Consensus 9 d~~~~~a~~~~~~~f~~~~~R~~~~~~~k~~~~~t~-------~~i~~lL~~~gIp~vvAP-yEADAq~A~L~r----~G 76 (531)
++ .+++||.+.++|+++ ..+.||++|..++ +.++++|+++|||++++| |||||+||+|++ .|
T Consensus 60 ~~-~v~vFDg~~~tfR~~-----~~~~YKa~R~~~pe~l~~q~~~i~~~l~~~gi~~i~~pg~EADD~iatLa~~~~~~G 133 (832)
T 1bgx_T 60 DA-VIVVFDAKAPSFRHE-----AYGGYKAGRAPTPEDFPRQLALIKELVDLLGLARLEVPGYEADDVLASLAKKAEKEG 133 (832)
T ss_dssp SC-CCCCCCCSSSCSSSG-----GGGTTTSCCCCCCTTSTTGGGTHHHHHHHTTCCCCCCSSSCHHHHHHHHHHHHHHHT
T ss_pred Ce-EEEEEcCCCcccccc-----chHHHHhccccChHHHHHHHHHHHHHHHHCCCCEEEeCCccHHHHHHHHHHHHHHcC
Confidence 66 899999877777544 4567888887776 468999999999999999 599999999997 68
Q ss_pred CEEEEEcCCCccccccCCeEEEeccccCcccCCcEEecHHHHHHhCCCCHHHHHHHHhHcC--CCCCCCCCCccHHHHHH
Q psy1206 77 KVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVLEGMELSHEEFIDLCILLG--CDYCDSIRGIGPKRAIE 154 (531)
Q Consensus 77 ~vd~ViSeDsDlL~fg~~~Vi~~l~~~~~~~~~v~~~~~~~i~~~lglt~eqfid~~iL~G--~DY~pGIpGIG~ktA~k 154 (531)
+.++|+|+|+|+++|++++|.+... .| ..++.+.+.+.+|++|+||+|+++|+| |||+|||||||+|||++
T Consensus 134 ~~v~IvS~DkDllql~~~~v~~~~~-~g------~~~~~~~v~~~~gv~p~q~id~~~L~GD~sDnipGVpGIG~KtA~k 206 (832)
T 1bgx_T 134 YEVRILTADKDLYQLLSDRIHVLHP-EG------YLITPAWLWEKYGLRPDQWADYRALTGDESDNLPGVKGIGEKTARK 206 (832)
T ss_dssp CCBCCCCSSTTCCTTCCTTBCBCCS-SS------CCBCSTTHHHHTCCCGGGTTTTTTSSCCSSSCCCCCCCSSSCTTTT
T ss_pred CeEEEEeCCCChhhcCcCCEEEEeC-CC------cEEcHHHHHHHHCcCHHHHHHHHHhcCCccccCCCCCCcCchHHHH
Confidence 8999999999999999999876554 32 458889999999999999999999999 99999999999999999
Q ss_pred HHHHcCCHHHHHHHhhhcC
Q psy1206 155 LIKEHRSIEKILENIDTKK 173 (531)
Q Consensus 155 LI~~~~sle~il~~l~~~~ 173 (531)
||++|||+|+|++++++.+
T Consensus 207 Ll~~~gsle~i~~~~~~~~ 225 (832)
T 1bgx_T 207 LLEEWGSLEALLKNLDRLK 225 (832)
T ss_dssp TGGGTTSSCSSSSSCCCCC
T ss_pred HHHHCCCHHHHHHHHHHhC
Confidence 9999999999999987643
No 12
>3q8k_A Flap endonuclease 1; helix-3 turn-helix, hydrophobic wedge, 3' flap binding site, hydrolase-DNA complex, DNA repair, replication; HET: DNA; 2.20A {Homo sapiens} PDB: 3q8l_A* 3q8m_A*
Probab=99.92 E-value=3.2e-25 Score=230.00 Aligned_cols=135 Identities=55% Similarity=0.850 Sum_probs=126.9
Q ss_pred ccccccCCCcccc-------cceeeecccchHHHHHHHHhhcCccccCCCCCCcchhhhHHHHHHHHHHcCCeeEEeecC
Q psy1206 304 ELVADVAPSSIRE-------SRKICIDASMSLYQFLIAVRSEGNQLMSVDGEPTSHLMGTFYRTIRLVEHGLKPIYVFDG 376 (531)
Q Consensus 304 ~Lv~~~aP~~i~~-------gk~iAIDa~~~lyqfl~~ir~~g~~l~~~~g~~tshl~g~~~R~~~ll~~gIkPVfVFDG 376 (531)
+++.+++|.++++ |++||||||+||||++++++.+|.+|+|++|++|+|+.|+|+|+++|+++||+|+|||||
T Consensus 7 ~~l~~~~p~~~~~~~l~~l~gk~l~IDgs~~lyr~~~a~~~~~~~l~~~~G~~T~al~g~~~~~~~ll~~~i~P~~VFDg 86 (341)
T 3q8k_A 7 KLIADVAPSAIRENDIKSYFGRKVAIDASMSIYQFLIAVRQGGDVLQNEEGETTSHLMGMFYRTIRMMENGIKPVYVFDG 86 (341)
T ss_dssp HHHHHHCGGGEEEEEGGGGTTCEEEEEHHHHHHHHHHHCEETTEECBCTTSCBCHHHHHHHHHHHHHHTTTCEEEEEECC
T ss_pred HHHHHhhhhccccccHHHhCCCEEEEecHHHHHHHHHccccccCCCCCCCCCCchHHHHHHHHHHHHHHCCCCceEEEeC
Confidence 4677778876664 899999999999999999997788999999999999999999999999999999999999
Q ss_pred CCCCcchHHHHHHHHHHHHHHHHHHHHHHcccccCCCCChhHHHHHHhhccccchHHHHHHHHHHHHHhc
Q psy1206 377 KPPTLKSGELNKRMEKREDAQKALAKAQEQGKLKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARS 446 (531)
Q Consensus 377 ~pp~lK~~~~~kR~~~r~~a~~~~~~a~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~ 446 (531)
++|++|.++..+|+++|+++.+++++|.++|+-+ ++.+|.++ +..++..++..++++|++||
T Consensus 87 ~~~~~r~~~~~~yk~~R~~~~~~~~~a~r~~~pe-------~l~~~~~~-~~~vt~~q~~~~~~lL~~~g 148 (341)
T 3q8k_A 87 KPPQLKSGELAKRSERRAEAEKQLQQAQAAGAEQ-------EVEKFTKR-LVKVTKQHNDECKHLLSLMG 148 (341)
T ss_dssp CCCGGGHHHHHHHHHHHHHHHHHHHHHHTTCCHH-------HHHHHHHH-TCCCCHHHHHHHHHHHHHHT
T ss_pred CCcccchhhhHHHHHHHhHhHHHHHHHHhcCCHH-------HHHHHHhh-cccCCHHHHHHHHHHHHHcC
Confidence 9999999999999999999999999999988765 99999998 99999999999999999998
No 13
>3qe9_Y Exonuclease 1; exonuclease, hydrolase-DNA complex; HET: DNA; 2.51A {Homo sapiens} PDB: 3qeb_Z* 3qea_Z*
Probab=99.89 E-value=1.9e-23 Score=217.49 Aligned_cols=120 Identities=21% Similarity=0.279 Sum_probs=110.4
Q ss_pred ccccceeeecccchHHHHHHHHhhcCccccCCCCCCcchhhhHHHHHHHH-HHcCCeeEEeecCCCCCcchHHHHHHHHH
Q psy1206 314 IRESRKICIDASMSLYQFLIAVRSEGNQLMSVDGEPTSHLMGTFYRTIRL-VEHGLKPIYVFDGKPPTLKSGELNKRMEK 392 (531)
Q Consensus 314 i~~gk~iAIDa~~~lyqfl~~ir~~g~~l~~~~g~~tshl~g~~~R~~~l-l~~gIkPVfVFDG~pp~lK~~~~~kR~~~ 392 (531)
-..|++||||||+||||++.+++.. ++.|++|+||.|+|+|+++| +++||+|||||||+||++|+.|+.+|+++
T Consensus 21 ~l~Gk~vaIDas~wL~~~~~~~~~~-----l~~G~~t~~l~~~~~r~l~~L~~~gI~PvfVFDG~~~p~Kk~~~~~Rr~~ 95 (352)
T 3qe9_Y 21 KYKGQVVAVDTYCWLHKGAIACAEK-----LAKGEPTDRYVGFCMKFVNMLLSHGIKPILVFDGCTLPSKKEVERSRRER 95 (352)
T ss_dssp GGTTSEEEEETHHHHHHHHHHTHHH-----HHTTCCCCHHHHHHHHHHHHHHHTTCEEEEEECCSCCTTTHHHHHHHHHH
T ss_pred HhCCcEEEEecHHHHHHhhhccchh-----hcCCCCcHHHHHHHHHHHHHHHHcCCEEEEEECCCCcHHHHHHHHHHHHH
Confidence 3569999999999999988766431 25799999999999999997 69999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHcccccCCCCChhHHHHHHhhccccchHHHHHHHHHHHHHhc
Q psy1206 393 REDAQKALAKAQEQGKLKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARS 446 (531)
Q Consensus 393 r~~a~~~~~~a~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~ 446 (531)
|+++.+++.++.++|+.+ ++++++++ +..+++.|++.++++|++||
T Consensus 96 r~~~~~~~~~~~~~g~~~-------~a~~~f~~-~~~vt~~~~~~i~~~L~~~g 141 (352)
T 3qe9_Y 96 RQANLLKGKQLLREGKVS-------EARECFTR-SINITHAMAHKVIKAARSQG 141 (352)
T ss_dssp HHHHHHHHHHHTTSSCCH-------HHHHHHGG-GCCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhCCHH-------HHHHHHhh-cCCCCHHHHHHHHHHHHHcC
Confidence 999999999999999976 99999998 89999999999999999998
No 14
>2izo_A FEN1, flap structure-specific endonuclease; hydrolase, DNA repair, DNA-binding, endonuclease, metal-BIND excision repair, DNA replication, PCNA; HET: DNA; 2.9A {Sulfolobus solfataricus}
Probab=99.87 E-value=6.9e-23 Score=212.69 Aligned_cols=123 Identities=44% Similarity=0.739 Sum_probs=71.8
Q ss_pred ccceeeecccchHHHHHHHHhh-cCccccCCCCCCcchhhhHHHHHHHHHHcCCeeEEeecCCCCCcchHHHHHHHHHHH
Q psy1206 316 ESRKICIDASMSLYQFLIAVRS-EGNQLMSVDGEPTSHLMGTFYRTIRLVEHGLKPIYVFDGKPPTLKSGELNKRMEKRE 394 (531)
Q Consensus 316 ~gk~iAIDa~~~lyqfl~~ir~-~g~~l~~~~g~~tshl~g~~~R~~~ll~~gIkPVfVFDG~pp~lK~~~~~kR~~~r~ 394 (531)
.|++|||||++|||++++++++ +|.+++++.|.+|+|+.|+++|+++|+++||+|||||||++|.+|.++..+|+..|+
T Consensus 17 ~~~~l~IDg~~~l~r~~~a~~~~~g~~l~~~~G~~t~al~g~~~~~~~ll~~~i~Pv~vFDG~~~~~r~~~~~~yk~~R~ 96 (346)
T 2izo_A 17 KGKRVSIDGYNALYQFLAAIRQPDGTPLMDSQGRVTSHLSGLFYRTINILEEGVIPIYVFDGKPPEQKSEELERRRKAKE 96 (346)
T ss_dssp TTEEEEEEHHHHHHHHHHSCCCC---CCBCSSSCBCHHHHHHHHHHHHHHHHTEEEEEEECC------------------
T ss_pred CCCEEEEEhHHHHHHHHHhccccccccccccCCCccHHHHHHHHHHHHHHHCCCcEEEEECCCCcchhhhHHHHHHHHHH
Confidence 3799999999999999999987 788999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHcccccCCCCChhHHHHHHhhccccchHHHHHHHHHHHHHhc
Q psy1206 395 DAQKALAKAQEQGKLKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARS 446 (531)
Q Consensus 395 ~a~~~~~~a~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~ 446 (531)
++.++|+++.+.|+.+ ++++|.++ +..+++.+++.++++|++||
T Consensus 97 ~~~~~l~~~~~~g~~~-------~a~~~~~~-~~~vt~~~~~~~~~lL~~~g 140 (346)
T 2izo_A 97 EAERKLERAKSEGKIE-------ELRKYSQA-ILRLSNIMVEESKKLLRAMG 140 (346)
T ss_dssp ------------------------------------CHHHHHHHHHHHHHHT
T ss_pred HhHHHHHHHHhcCCHH-------HHHHHHhh-ccCCCHHHHHHHHHHHHHCC
Confidence 9999999999999987 89999998 99999999999999999998
No 15
>1b43_A Protein (FEN-1); nuclease, DNA repair, DNA replication, transferase; 2.00A {Pyrococcus furiosus} SCOP: a.60.7.1 c.120.1.2 PDB: 1mc8_A
Probab=99.85 E-value=3.2e-22 Score=207.05 Aligned_cols=125 Identities=44% Similarity=0.695 Sum_probs=119.0
Q ss_pred ccccceeeecccchHHHHHHHHhh-cCccccCCCCCCcchhhhHHHHHHHHHHcCCeeEEeecCCCCCcchHHHHHHHHH
Q psy1206 314 IRESRKICIDASMSLYQFLIAVRS-EGNQLMSVDGEPTSHLMGTFYRTIRLVEHGLKPIYVFDGKPPTLKSGELNKRMEK 392 (531)
Q Consensus 314 i~~gk~iAIDa~~~lyqfl~~ir~-~g~~l~~~~g~~tshl~g~~~R~~~ll~~gIkPVfVFDG~pp~lK~~~~~kR~~~ 392 (531)
-..|++||||||+|||++++++++ +|.+++++.|++|+|+.|+|+|+++|+++||+|||||||++|++|.++.++|+++
T Consensus 18 ~l~g~~l~ID~~~~l~r~~~a~~~~~~~~l~~~~G~~t~~l~g~~~~l~~ll~~~i~pv~VFDG~~~~~K~~~~~~R~~~ 97 (340)
T 1b43_A 18 NLYGKKIAIDALNAIYQFLSTIRQKDGTPLMDSKGRITSHLSGLFYRTINLMEAGIKPVYVFDGEPPEFKKKELEKRREA 97 (340)
T ss_dssp GGTTCEEEEEHHHHHHHHHHHSBCTTSCBCBCTTSCBCHHHHHHHHHHHHHHHTTCEEEEEECCSCCCCSSCSSTTCCCC
T ss_pred HhCCCEEEEEhHHHHHHHHHHhccccCCccccccCCchHHHHHHHHHHHHHHhCCCEEEEEecCCCchhhhhhHHHHHHH
Confidence 345999999999999999999986 7889999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHcccccCCCCChhHHHHHHhhccccchHHHHHHHHHHHHHhc
Q psy1206 393 REDAQKALAKAQEQGKLKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARS 446 (531)
Q Consensus 393 r~~a~~~~~~a~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~ 446 (531)
|+++.++|+++.++|+.+ .+.+|.++ +..+++.+++.++++|++||
T Consensus 98 r~~~~~~~~~~yk~g~~~-------~~~~~~~~-~~~vt~~~~~~~~~lL~~~g 143 (340)
T 1b43_A 98 REEAEEKWREALEKGEIE-------EARKYAQR-ATRVNEMLIEDAKKLLELMG 143 (340)
T ss_dssp TTHHHHHHHHHHHHSCHH-------HHHHHHHT-SGGGTHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHcCCHH-------HHHHHHHh-cCCCCHHHHHHHHHHHHHcC
Confidence 999999999999999876 88999988 88999999999999999998
No 16
>1rxw_A Flap structure-specific endonuclease; helical clamp, helix-3 turn-helix, hydrophobic wedge, 3' FLA site, hydrolase-DNA complex; 2.00A {Archaeoglobus fulgidus} SCOP: a.60.7.1 c.120.1.2 PDB: 1rxv_A
Probab=99.85 E-value=3.7e-21 Score=198.84 Aligned_cols=125 Identities=35% Similarity=0.618 Sum_probs=119.2
Q ss_pred cccccceeeecccchHHHHHHHHhh-cCccccCCCCCCcchhhhHHHHHHHHHHcCCeeEEeecCCCCCcchHHHHHHHH
Q psy1206 313 SIRESRKICIDASMSLYQFLIAVRS-EGNQLMSVDGEPTSHLMGTFYRTIRLVEHGLKPIYVFDGKPPTLKSGELNKRME 391 (531)
Q Consensus 313 ~i~~gk~iAIDa~~~lyqfl~~ir~-~g~~l~~~~g~~tshl~g~~~R~~~ll~~gIkPVfVFDG~pp~lK~~~~~kR~~ 391 (531)
....|++|||||++|||++++++++ +|.+++++.|++|+|+.|+++|+++|+++||+|||||||.+|.+|.++..+|+.
T Consensus 17 ~~l~~~~l~IDg~~~l~r~~~a~~~~~~~~l~~~~G~~t~a~~g~~~~l~~ll~~~i~Pv~vFDg~~~~~R~~~~~~yk~ 96 (336)
T 1rxw_A 17 EYFSGKKIAVDAFNTLYQFISIIRQPDGTPLKDSQGRITSHLSGILYRVSNMVEVGIRPVFVFDGEPPEFKKAEIEERKK 96 (336)
T ss_dssp GGGTTCEEEEEHHHHHHHHHHHSBCTTSCBCBCTTSCBCHHHHHHHHHHHHHHHHTCEEEEEECCSCCGGGHHHHHHHHH
T ss_pred HHhCCCEEEEEhHHHHHHHHHhhccccCCcccccCCCccHHHHHHHHHHHHHHHCCCEEEEEEcCCCCcccccchHHHHH
Confidence 4456899999999999999999987 788999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHcccccCCCCChhHHHHHHhhccccchHHHHHHHHHHHHHhc
Q psy1206 392 KREDAQKALAKAQEQGKLKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARS 446 (531)
Q Consensus 392 ~r~~a~~~~~~a~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~ 446 (531)
+|+++.+.+.++.++|+ + ++++|+++ +..+++.++..++++|++||
T Consensus 97 ~R~~~~~~~~~~~~~g~-~-------~l~~~~~~-~~~vt~~~~~~~~~lL~~~g 142 (336)
T 1rxw_A 97 RRAEAEEMWIAALQAGD-K-------DAKKYAQA-AGRVDEYIVDSAKTLLSYMG 142 (336)
T ss_dssp HHHHHHHHHHHHHHHTC-T-------THHHHHHH-HCCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHhch-H-------HHHHHHHh-hccCCHHHHHHHHHHHHhCC
Confidence 99999999999999998 6 89999998 99999999999999999998
No 17
>1ul1_X Flap endonuclease-1; protein complex, DNA-binding protein, flap DNA, flap endonuclease, sliding clamp, DNA clamp; 2.90A {Homo sapiens} SCOP: a.60.7.1 c.120.1.2
Probab=99.84 E-value=1.7e-22 Score=212.20 Aligned_cols=124 Identities=52% Similarity=0.794 Sum_probs=79.3
Q ss_pred ccceeeecccchHHHHHHHHhhcCccccCCCCCCcchhhhHHHHHHHHHHcCCeeEEeecCCCCCcchHHHHHHHHHHHH
Q psy1206 316 ESRKICIDASMSLYQFLIAVRSEGNQLMSVDGEPTSHLMGTFYRTIRLVEHGLKPIYVFDGKPPTLKSGELNKRMEKRED 395 (531)
Q Consensus 316 ~gk~iAIDa~~~lyqfl~~ir~~g~~l~~~~g~~tshl~g~~~R~~~ll~~gIkPVfVFDG~pp~lK~~~~~kR~~~r~~ 395 (531)
.|++|||||++|||+++++++.+|.+|+++.|++|+|+.|+|+|+++|+++||+|||||||.+|.+|.++..+|+.+|++
T Consensus 26 ~g~~l~IDg~~~lyr~~~a~~~~~~~l~~~~G~~t~~l~g~~~~~~~ll~~~i~P~~VFDG~~~~~K~~~~~~yk~~R~~ 105 (379)
T 1ul1_X 26 FGRKVAIDASMSIYQFLIAVRQGGDVLQNEEGETTSHLMGMFYRTIRMMENGIKPVYVFDGKPPQLKSGELAKRSERRAE 105 (379)
T ss_dssp TTCCEEEEHHHHHHHHHSCC-------------CCHHHHHHHHHHHHHHHTTCCEEEEECCSCCSCCCCCCCCC------
T ss_pred CCCEEEEEchHHHHHHHHhCCCcccccCcCCCCCchHHHHHHHHHHHHHHCCCCeEEEEeCCCcccccchHHHHHhhhhH
Confidence 48999999999999999999877889999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHcccccCCCCChhHHHHHHhhccccchHHHHHHHHHHHHHhcc
Q psy1206 396 AQKALAKAQEQGKLKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARST 447 (531)
Q Consensus 396 a~~~~~~a~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 447 (531)
+.+++.+|.++|+.+ ++.+|.++ +..++..++..++++|++||=
T Consensus 106 ~~~~~~~~~~~g~~~-------~~~~~~~~-~~~vt~~~~~~~~~lL~~~Gi 149 (379)
T 1ul1_X 106 AEKQLQQAQAAGAEQ-------EVEKFTKR-LVKVTKQHNDECKHLLSLMGI 149 (379)
T ss_dssp -------------------------------CCCCCCSCHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHcCCHH-------HHHHHHhh-ccCCCHHHHHHHHHHHHHcCC
Confidence 999999999999876 89999998 899999999999999999983
No 18
>1a76_A Flap endonuclease-1 protein; 5'-3' EXO/endo nuclease, DNA replication, RTH, RAD27, DNA repair; 2.00A {Methanocaldococcus jannaschii} SCOP: a.60.7.1 c.120.1.2 PDB: 1a77_A
Probab=99.80 E-value=1.1e-21 Score=201.92 Aligned_cols=125 Identities=34% Similarity=0.555 Sum_probs=117.8
Q ss_pred ccccceeeecccchHHHHHHHHhh-cCccccCCCCCCcchhhhHHHHHHHHHHcCCeeEEeecCCCCCcchHHHHHHHHH
Q psy1206 314 IRESRKICIDASMSLYQFLIAVRS-EGNQLMSVDGEPTSHLMGTFYRTIRLVEHGLKPIYVFDGKPPTLKSGELNKRMEK 392 (531)
Q Consensus 314 i~~gk~iAIDa~~~lyqfl~~ir~-~g~~l~~~~g~~tshl~g~~~R~~~ll~~gIkPVfVFDG~pp~lK~~~~~kR~~~ 392 (531)
-..|++|||||++|||++++++++ +|.+++++.|++|+|+.|+|+|+++|+.+||+|||||||.+|.+|.++..+|+.+
T Consensus 18 ~l~~~~l~IDg~~~l~r~~~a~~~~~~~~l~~~~G~~t~~l~g~~~~l~~ll~~~i~Pv~vFDG~~~~~k~~~~~~yk~~ 97 (326)
T 1a76_A 18 DLKGKKVAIDGMNALYQFLTSIRLRDGSPLRNRKGEITSAYNGVFYKTIHLLENDITPIWVFDGEPPKLKEKTRKVRREM 97 (326)
T ss_dssp GGTTCEEEEEHHHHHHHHHHHSBCTTSCBCBCTTSCBCHHHHHHHHHHHHHHHTTCEEEEEECCCSSCCCCSSCCSSCSS
T ss_pred HhCCCEEEEEhHHHHHHHHHhhccccccccccccCCccHHHHHHHHHHHHHHHCCCeEEEEEeCcCcccchhhHHHHHHH
Confidence 346899999999999999999986 7889999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHcccccCCCCChhHHHHHHhhccccchHHHHHHHHHHHHHhc
Q psy1206 393 REDAQKALAKAQEQGKLKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARS 446 (531)
Q Consensus 393 r~~a~~~~~~a~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~ 446 (531)
|+++.+++.+|.+.|+.+ ++.+|.++ +..+++.+++.++++|++||
T Consensus 98 R~~~~~~l~~~~~~g~~~-------~a~~~~~~-~~~vt~~~~~~~~~lL~~~g 143 (326)
T 1a76_A 98 KEKAELKMKEAIKKEDFE-------EAAKYAKR-VSYLTPKMVENCKYLLSLMG 143 (326)
T ss_dssp SCSSCSCCCCCCSHHHHH-------TTSTTGGG-GCSSCHHHHHHHHHHHHHHT
T ss_pred HHhhHHHHHHHHHcCCHH-------HHHHHHHh-cCCCCHHHHHHHHHHHHHcC
Confidence 999999998888889876 88999888 89999999999999999998
No 19
>3h7i_A Ribonuclease H, RNAse H; BPT4 RNAse H, 5'-3' exonuclease, hydrolase, endonuclease; 1.50A {Enterobacteria phage T4} PDB: 2ihn_A 3h8w_A 3h8j_A 1tfr_A 3h8s_A
Probab=99.78 E-value=5.4e-20 Score=186.63 Aligned_cols=125 Identities=14% Similarity=-0.030 Sum_probs=103.1
Q ss_pred CCCccceeecccCC-CCCcchhHHhHHHHHHhhccCCCH---------------HHHHHHHhhcCCccccCC-CchhHHH
Q psy1206 7 DPDEDGLVKYLCGD-KNFAEDRIRNGAKKLLKARSSTTQ---------------GRLDSFFTIRREEKRKAP-CEAEAQC 69 (531)
Q Consensus 7 ~~d~~~~~a~~~~~-~~f~~~~~R~~~~~~~k~~~~~t~---------------~~i~~lL~~~gIp~vvAP-yEADAq~ 69 (531)
.|+| ++|+||.+. ++ +|++.++.||++|..+| +.|+++|+++|||++..| |||||.|
T Consensus 62 ~P~~-iavaFD~~~~~t-----fR~elyp~YKanR~~~PeeL~~Q~~~l~~Qi~p~ike~l~a~gi~~l~~~G~EADDiI 135 (305)
T 3h7i_A 62 GYTK-IVLCIDNAKSGY-----WRRDFAYYYKKNRGKAREESTWDWEGYFESSHKVIDELKAYMPYIVMDIDKYEANDHI 135 (305)
T ss_dssp TCCE-EEEECCCCTTCC-----HHHHHSTTTTHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHSSSEEECCTTCCHHHHH
T ss_pred CCCE-EEEEecCCCCcc-----hHhhhCHHhccCCCCCCHHHHHHHHHhhhhhHHHHHHHHHHCCCCEEccCCccHHHHH
Confidence 8999 999999763 44 56667888899987776 258899999999999888 6999999
Q ss_pred HHHHH----cCCEEEEEcCCCccccccC-CeE-EEeccccCcccCCcEEecHHHHHHhCCCCHHHHHHHHhHcC--CCCC
Q psy1206 70 AAMVK----AGKVYATATEDMDALTFGS-NIL-LRHMTFSEARKLPVQEFHLEKVLEGMELSHEEFIDLCILLG--CDYC 141 (531)
Q Consensus 70 A~L~r----~G~vd~ViSeDsDlL~fg~-~~V-i~~l~~~~~~~~~v~~~~~~~i~~~lglt~eqfid~~iL~G--~DY~ 141 (531)
|+|++ .|.-..|+|+|+|++|+.. +.| +++. .. .+.|.+++|+ |+|++|+.+|+| +|++
T Consensus 136 gTLA~~a~~~g~~V~IvSgDKDl~QLv~~~~V~~~~~-~~-----------~~~V~ek~Gv-P~q~iD~~aL~GDsSDNI 202 (305)
T 3h7i_A 136 AVLVKKFSLEGHKILIISSDGDFTQLHKYPNVKQWSP-MH-----------KKWVKIKSGS-AEIDCMTKILKGDKKDNV 202 (305)
T ss_dssp HHHHHHHHHTTCCEEEECSSCCCGGGGGSSSEEEEET-TT-----------TEEECSSCSC-HHHHHHHHHHHCBGGGTB
T ss_pred HHHHHHHHHCCCcEEEEeCCCCccccccCCCeEEEec-CC-----------HHHHHHHhCC-HHHHhhHHheeCccccCC
Confidence 99986 4777789999999999998 565 3322 11 1335678998 999999999999 9999
Q ss_pred CCCCCccHH
Q psy1206 142 DSIRGIGPK 150 (531)
Q Consensus 142 pGIpGIG~k 150 (531)
|||||||+.
T Consensus 203 PGVpGIG~~ 211 (305)
T 3h7i_A 203 ASVKVRSDF 211 (305)
T ss_dssp CCTTSCTTH
T ss_pred CCCCcCCcc
Confidence 999999985
No 20
>1exn_A 5'-exonuclease, 5'-nuclease; hydrolase; 2.50A {Enterobacteria phage T5} SCOP: a.60.7.1 c.120.1.2 PDB: 1ut5_A 1ut8_A 1xo1_A
Probab=98.87 E-value=1.1e-09 Score=111.21 Aligned_cols=81 Identities=10% Similarity=0.134 Sum_probs=60.5
Q ss_pred ccccccCCCcccccceeeecccchHHHHHHHHhhcCccccCCCCCCcchhhhHHHHHHHHHHcCCee---EEeecCCCCC
Q psy1206 304 ELVADVAPSSIRESRKICIDASMSLYQFLIAVRSEGNQLMSVDGEPTSHLMGTFYRTIRLVEHGLKP---IYVFDGKPPT 380 (531)
Q Consensus 304 ~Lv~~~aP~~i~~gk~iAIDa~~~lyqfl~~ir~~g~~l~~~~g~~tshl~g~~~R~~~ll~~gIkP---VfVFDG~pp~ 380 (531)
+++..++++--..++.++||++++||++.+ +++|++ |++|+++++.+|++. ++| |+||||++|.
T Consensus 6 ~~~~~~~~~~~~~~~lllIDg~~llyRa~~----------~~~G~p--av~Gf~~~l~~ll~~-~~p~~~vvvFD~~~~t 72 (290)
T 1exn_A 6 KFIEEEEAEMASRRNLMIVDGTNLGFRFKH----------NNSKKP--FASSYVSTIQSLAKS-YSARTTIVLGDKGKSV 72 (290)
T ss_dssp -------------CEEEEEEHHHHHHHHHH----------HCSSSC--CHHHHHHHHHHHHHH-TTEEEEEEECCBSCCH
T ss_pred HHhhhcccccccCCCEEEEECcHHHHHHHh----------CCCCch--HHHHHHHHHHHHHHH-cCCCeEEEEEcCCCch
Confidence 445444443222578999999999999987 356766 999999999999987 777 9999999999
Q ss_pred cchHHHHHHHHHHHHHH
Q psy1206 381 LKSGELNKRMEKREDAQ 397 (531)
Q Consensus 381 lK~~~~~kR~~~r~~a~ 397 (531)
++.+...+++..|.++-
T Consensus 73 fR~~~~~~YKa~R~~~p 89 (290)
T 1exn_A 73 FRLEHLPEYKGNRDEKY 89 (290)
T ss_dssp HHHHHCTTTTHHHHHHH
T ss_pred hhhhCcHHHHcCCCCCC
Confidence 99888888888888765
No 21
>1bgx_T TAQ DNA polymerase; DNA polymerase, FAB, PCR, inhibition, helix-coil dynamics, inhibitor design, complex (polymerase/inhibitor); 2.30A {Thermus aquaticus} SCOP: a.60.7.1 c.120.1.2 c.55.3.5 e.8.1.1 PDB: 1cmw_A 1tau_A* 1taq_A*
Probab=98.68 E-value=1.2e-09 Score=124.95 Aligned_cols=82 Identities=22% Similarity=0.346 Sum_probs=72.1
Q ss_pred CCcccccceeeecccchHHHHHHHHhhcCccccCCCCCCcchhhhHHHHHHHHHHc-CCeeEEeecCCCCCcchHHHHHH
Q psy1206 311 PSSIRESRKICIDASMSLYQFLIAVRSEGNQLMSVDGEPTSHLMGTFYRTIRLVEH-GLKPIYVFDGKPPTLKSGELNKR 389 (531)
Q Consensus 311 P~~i~~gk~iAIDa~~~lyqfl~~ir~~g~~l~~~~g~~tshl~g~~~R~~~ll~~-gIkPVfVFDG~pp~lK~~~~~kR 389 (531)
|-.-..|+.|+||+++|||+++.+++ ++++++|.+|+|+.|+++++.+|++. +++|||||||++|.+|.++..++
T Consensus 6 ~l~~~~~~~llIDg~~~l~ra~~a~~----~l~~~~G~~t~av~gf~~~l~~ll~~~~~~~v~vFDg~~~tfR~~~~~~Y 81 (832)
T 1bgx_T 6 PLFEPKGRVLLVDGHHLAYRTFHALK----GLTTSRGEPVQAVYGFAKSLLKALKEDGDAVIVVFDAKAPSFRHEAYGGY 81 (832)
T ss_dssp CCCCCCTTSCCCCCSTHHHHTTSSCT----TCBCSSSCBCSSSTTHHHHHHHGGGTCCSCCCCCCCCSSSCSSSGGGGTT
T ss_pred CHHHhCCCEEEEEChHHHHHHHhcCC----ccccCCCcEehHHHHHHHHHHHHHHHcCCeEEEEEcCCCccccccchHHH
Confidence 44555689999999999999999884 58999999999999999999999877 69999999999999999988888
Q ss_pred HHHHHHH
Q psy1206 390 MEKREDA 396 (531)
Q Consensus 390 ~~~r~~a 396 (531)
+..|.++
T Consensus 82 Ka~R~~~ 88 (832)
T 1bgx_T 82 KAGRAPT 88 (832)
T ss_dssp TSCCCCC
T ss_pred HhccccC
Confidence 7776653
No 22
>2ztd_A Holliday junction ATP-dependent DNA helicase RUVA; recombination, branch migration, DNA BIND oligomerization, acidic PIN; 2.40A {Mycobacterium tuberculosis} PDB: 2ztc_A 2zte_A 2h5x_A 1bvs_A
Probab=95.57 E-value=0.0081 Score=58.22 Aligned_cols=49 Identities=20% Similarity=0.332 Sum_probs=32.9
Q ss_pred HHHHHHhCCCCHHHHHHHHhHcCCCCCCCCCCccHHHHHHHHHHcCCHHHHHHHh
Q psy1206 115 LEKVLEGMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENI 169 (531)
Q Consensus 115 ~~~i~~~lglt~eqfid~~iL~G~DY~pGIpGIG~ktA~kLI~~~~sle~il~~l 169 (531)
.++-...|||....-.++..++.+ |+|||||+|.+++..|+. +.+...+
T Consensus 69 RED~~~LyGF~~~~Er~lf~~L~s-----v~GIGpk~A~~Ils~~~~-~~l~~aI 117 (212)
T 2ztd_A 69 REDSMTLYGFPDGETRDLFLTLLS-----VSGVGPRLAMAALAVHDA-PALRQVL 117 (212)
T ss_dssp ETTEEEEEEESSHHHHHHHHHHHT-----STTCCHHHHHHHHHHSCH-HHHHHHH
T ss_pred ecCCcceEecCcHHHHHHHHHhcC-----cCCcCHHHHHHHHHhCCH-HHHHHHH
Confidence 344455678765555555554333 999999999999999875 4444433
No 23
>1ixr_A Holliday junction DNA helicase RUVA; heterooligomeric complex, octameric RUVA, AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ANP; 3.30A {Thermus thermophilus} SCOP: a.60.2.1 b.40.4.2
Probab=95.50 E-value=0.011 Score=56.34 Aligned_cols=25 Identities=24% Similarity=0.541 Sum_probs=21.3
Q ss_pred CCCccHHHHHHHHHHcCCHHHHHHHh
Q psy1206 144 IRGIGPKRAIELIKEHRSIEKILENI 169 (531)
Q Consensus 144 IpGIG~ktA~kLI~~~~sle~il~~l 169 (531)
|||||||+|.+|++.|++ +.+.+.+
T Consensus 77 v~GIGpk~A~~iL~~f~~-~~l~~aI 101 (191)
T 1ixr_A 77 VSGVGPKVALALLSALPP-RLLARAL 101 (191)
T ss_dssp SSCCCHHHHHHHHHHSCH-HHHHHHH
T ss_pred CCCcCHHHHHHHHHhCCh-HHHHHHH
Confidence 999999999999999988 5555554
No 24
>2a1j_A DNA repair endonuclease XPF; XPF, xeroderma pigmentosum, DNA repair, endonuclease, helix-hairpin-helix, DNA binding protein; HET: DNA; 2.70A {Homo sapiens} SCOP: a.60.2.5 PDB: 2kn7_A*
Probab=95.08 E-value=0.013 Score=45.94 Aligned_cols=26 Identities=15% Similarity=0.332 Sum_probs=23.6
Q ss_pred CCCCCccHHHHHHHHHHcCCHHHHHH
Q psy1206 142 DSIRGIGPKRAIELIKEHRSIEKILE 167 (531)
Q Consensus 142 pGIpGIG~ktA~kLI~~~~sle~il~ 167 (531)
..|||||++++..|+++|||+++|.+
T Consensus 7 ~~IpGIG~kr~~~LL~~Fgs~~~i~~ 32 (63)
T 2a1j_A 7 LKMPGVNAKNCRSLMHHVKNIAELAA 32 (63)
T ss_dssp HTSTTCCHHHHHHHHHHCSSHHHHHT
T ss_pred HcCCCCCHHHHHHHHHHcCCHHHHHH
Confidence 47999999999999999999988864
No 25
>1cuk_A RUVA protein; DNA repair, SOS response, DNA-binding, DNA recombination; 1.90A {Escherichia coli} SCOP: a.5.1.1 a.60.2.1 b.40.4.2 PDB: 1hjp_A 1bdx_A* 1c7y_A 1d8l_A
Probab=94.79 E-value=0.017 Score=55.47 Aligned_cols=25 Identities=20% Similarity=0.587 Sum_probs=21.0
Q ss_pred CCCccHHHHHHHHHHcCCHHHHHHHh
Q psy1206 144 IRGIGPKRAIELIKEHRSIEKILENI 169 (531)
Q Consensus 144 IpGIG~ktA~kLI~~~~sle~il~~l 169 (531)
|||||||+|.+|++.|++ +.+.+.+
T Consensus 78 V~GIGpk~A~~iL~~f~~-~~l~~aI 102 (203)
T 1cuk_A 78 TNGVGPKLALAILSGMSA-QQFVNAV 102 (203)
T ss_dssp SSSCCHHHHHHHHHHSCH-HHHHHHH
T ss_pred CCCcCHHHHHHHHhhCCh-HHHHHHH
Confidence 999999999999999988 5555544
No 26
>1z00_B DNA repair endonuclease XPF; helix-hairpin-helix, hydrolase; HET: DNA; NMR {Homo sapiens} SCOP: a.60.2.5 PDB: 2aq0_A*
Probab=94.25 E-value=0.03 Score=46.58 Aligned_cols=26 Identities=15% Similarity=0.345 Sum_probs=23.7
Q ss_pred CCCCccHHHHHHHHHHcCCHHHHHHH
Q psy1206 143 SIRGIGPKRAIELIKEHRSIEKILEN 168 (531)
Q Consensus 143 GIpGIG~ktA~kLI~~~~sle~il~~ 168 (531)
.|||||+|++..|+++|+|+++|.+.
T Consensus 22 ~IpGIG~kr~~~LL~~FgSl~~i~~A 47 (84)
T 1z00_B 22 KMPGVNAKNCRSLMHHVKNIAELAAL 47 (84)
T ss_dssp TCSSCCHHHHHHHHHHSSCHHHHHHS
T ss_pred hCCCCCHHHHHHHHHHcCCHHHHHHC
Confidence 69999999999999999999988653
No 27
>2a1j_A DNA repair endonuclease XPF; XPF, xeroderma pigmentosum, DNA repair, endonuclease, helix-hairpin-helix, DNA binding protein; HET: DNA; 2.70A {Homo sapiens} SCOP: a.60.2.5 PDB: 2kn7_A*
Probab=94.12 E-value=0.018 Score=45.10 Aligned_cols=28 Identities=14% Similarity=0.351 Sum_probs=24.9
Q ss_pred cccCCCCCchHHHHHHHHhhccHHHHHH
Q psy1206 243 YCDSIRGIGPKRAIELIKEHRSIEKILE 270 (531)
Q Consensus 243 Y~~~i~giG~k~A~kli~k~~s~~~vi~ 270 (531)
-+.+|||||+|++.+|+++++|+++|..
T Consensus 5 ~L~~IpGIG~kr~~~LL~~Fgs~~~i~~ 32 (63)
T 2a1j_A 5 FLLKMPGVNAKNCRSLMHHVKNIAELAA 32 (63)
T ss_dssp HHHTSTTCCHHHHHHHHHHCSSHHHHHT
T ss_pred HHHcCCCCCHHHHHHHHHHcCCHHHHHH
Confidence 3568999999999999999999988764
No 28
>2y35_A LD22664P; hydrolase-DNA complex, RNA degradation, exonuclease 5'-3', R interference; 3.20A {Drosophila melanogaster}
Probab=93.37 E-value=0.062 Score=63.42 Aligned_cols=102 Identities=18% Similarity=0.227 Sum_probs=65.7
Q ss_pred CCccccC----CCchhHHHHHHHHc---------CCEEEEEcCCCccccccC----Ce--EEEec-cccCc-c-----cC
Q psy1206 55 REEKRKA----PCEAEAQCAAMVKA---------GKVYATATEDMDALTFGS----NI--LLRHM-TFSEA-R-----KL 108 (531)
Q Consensus 55 gIp~vvA----PyEADAq~A~L~r~---------G~vd~ViSeDsDlL~fg~----~~--Vi~~l-~~~~~-~-----~~ 108 (531)
++.++.+ |+|+|.-|-...|. ....+|++.|+|++++|= ++ |+|.- .+... + ..
T Consensus 162 ~~~Vi~S~~~vPGEGEhKIm~~IR~~~~~p~~~pn~~HciyG~DADLImL~L~the~~f~ilRe~v~f~~~~~~~~~~~~ 241 (1140)
T 2y35_A 162 RCTVILSGQEAPGEGEHKIMDYIRYMKTQPDYDPNTRHCLYGLDAALIILGLCTHELHFVVLREEVKFGRNVKRTSVEET 241 (1140)
T ss_dssp SSEEEEECSSSCSCHHHHHHHHHHHHHHSTTCCTTCCEEEECCSHHHHHHHHHTTCSSEEEEEESSCTTCCTTCCCGGGC
T ss_pred ceEEEEeCCCCCCchHHHHHHHHHHHhhCCCCCCCCeEEEEccCHhHHHHHHccCCCcEEEeeccccccccccccccccc
Confidence 5777753 89999888776652 356889999999999882 33 45542 12110 0 11
Q ss_pred CcEEecHHHHHHh------------CCCC----HHHHHHHHhHcCCCCCCCCCCccHHH-HHHHH
Q psy1206 109 PVQEFHLEKVLEG------------MELS----HEEFIDLCILLGCDYCDSIRGIGPKR-AIELI 156 (531)
Q Consensus 109 ~v~~~~~~~i~~~------------lglt----~eqfid~~iL~G~DY~pGIpGIG~kt-A~kLI 156 (531)
.+..+++..+.+. ..++ .+.|+.+|.|+|.||+|++|++.+.. |+.++
T Consensus 242 ~f~~l~i~~lReyL~~ef~~~~~~~~~~d~eriidDfVfl~fl~GNDFLP~lp~l~I~~gai~~L 306 (1140)
T 2y35_A 242 RFFLLHLGLLREYLELEFDALRTDEHKLDIAQLIDDWVLMGFLVGNDFIPHLPCLHISSNALPLL 306 (1140)
T ss_dssp EEEEEEHHHHHHHHHHHGGGGCCSSSCCCHHHHHHHHHHHHHHHCCTTSCCCTTCCTTTTHHHHH
T ss_pred ceEEEEehHHHHHHHHHhhhhccccccccHHHHHHHHHHHHHHhCCccCCCCCccccCCCHHHHH
Confidence 3445665544332 1234 55778899999999999999987543 44443
No 29
>1x2i_A HEF helicase/nuclease; alpha helix, helix-hairpin-helix DNA binding domain, homodimer, hydrolase; 1.45A {Pyrococcus furiosus} SCOP: a.60.2.5
Probab=93.15 E-value=0.063 Score=42.26 Aligned_cols=26 Identities=19% Similarity=0.406 Sum_probs=23.4
Q ss_pred CCCCCccHHHHHHHHHHcCCHHHHHH
Q psy1206 142 DSIRGIGPKRAIELIKEHRSIEKILE 167 (531)
Q Consensus 142 pGIpGIG~ktA~kLI~~~~sle~il~ 167 (531)
.+|||||+++|.+|+..|+|++++..
T Consensus 17 ~~i~giG~~~a~~Ll~~fgs~~~l~~ 42 (75)
T 1x2i_A 17 EGLPHVSATLARRLLKHFGSVERVFT 42 (75)
T ss_dssp TTSTTCCHHHHHHHHHHHCSHHHHHH
T ss_pred cCCCCCCHHHHHHHHHHcCCHHHHHh
Confidence 48999999999999999999888764
No 30
>1z00_B DNA repair endonuclease XPF; helix-hairpin-helix, hydrolase; HET: DNA; NMR {Homo sapiens} SCOP: a.60.2.5 PDB: 2aq0_A*
Probab=93.14 E-value=0.036 Score=46.10 Aligned_cols=29 Identities=14% Similarity=0.305 Sum_probs=25.5
Q ss_pred cccCCCCCchHHHHHHHHhhccHHHHHHH
Q psy1206 243 YCDSIRGIGPKRAIELIKEHRSIEKILEN 271 (531)
Q Consensus 243 Y~~~i~giG~k~A~kli~k~~s~~~vi~~ 271 (531)
-+..|||||+|++.+|+++++|++.|..+
T Consensus 19 ~L~~IpGIG~kr~~~LL~~FgSl~~i~~A 47 (84)
T 1z00_B 19 FLLKMPGVNAKNCRSLMHHVKNIAELAAL 47 (84)
T ss_dssp HHHTCSSCCHHHHHHHHHHSSCHHHHHHS
T ss_pred HHHhCCCCCHHHHHHHHHHcCCHHHHHHC
Confidence 35689999999999999999999887654
No 31
>4glx_A DNA ligase; inhibitor, ligase-ligase inhibitor-DNA complex; HET: DNA 0XS; 1.90A {Escherichia coli}
Probab=92.80 E-value=0.16 Score=56.10 Aligned_cols=93 Identities=16% Similarity=0.245 Sum_probs=60.0
Q ss_pred CCCCccHHHHHHHHHHc-----CCHHHHHHHhhhcCCCCCCCCcHHHHHHHhcCCCcCCCCCcccccccccccccccccc
Q psy1206 143 SIRGIGPKRAIELIKEH-----RSIEKILENIDTKKYTVPEGWLYKEARELFRHPEVADPETIEFIDLCILLGCDYCDSI 217 (531)
Q Consensus 143 GIpGIG~ktA~kLI~~~-----~sle~il~~l~~~~~~ip~~f~~~~A~~~f~~p~V~d~~~~~~v~Ls~~~~~d~cesl 217 (531)
.++|+|.|+|.+|+... .++..++-.|. |
T Consensus 484 ~l~g~geKsa~nL~~aIe~sk~~~l~r~l~aLG-----I----------------------------------------- 517 (586)
T 4glx_A 484 GLERMGPKSAQNVVNALEKAKETTFARFLYALG-----I----------------------------------------- 517 (586)
T ss_dssp TSTTCCHHHHHHHHHHHHHHTBCCHHHHHHHTT-----C-----------------------------------------
T ss_pred cccCccHHHHHHHHHHHHHHcCCCHHHHHHHcC-----C-----------------------------------------
Confidence 89999999999999763 45666665552 1
Q ss_pred cCCChhhhHhHHhhhhhhhhhccC--ccccCCCCCchHHHHHHHHhhccHH--HHHHHHhhCCCCCCC
Q psy1206 218 RGIGPKRAIELLYSFIDLCILLGC--DYCDSIRGIGPKRAIELIKEHRSIE--KILENIDTKKYTVPE 281 (531)
Q Consensus 218 ~~~Gp~~~~el~e~F~~~CiLsGC--DY~~~i~giG~k~A~kli~k~~s~~--~vi~~l~~~~~~vP~ 281 (531)
++.|+..+..|...|.+|=-|..- +-+..|+|||+++|..++.=+...+ .++..|...|+..|+
T Consensus 518 ~~vG~~~a~~La~~f~sl~~l~~a~~e~l~~i~giG~~~A~si~~ff~~~~n~~~i~~L~~~Gv~~~~ 585 (586)
T 4glx_A 518 REVGEATAAGLAAYFGTLEALEAASIEELQKVPDVGIVVASHVHNFFAEESNRNVISELLAEGVHWPA 585 (586)
T ss_dssp TTCCHHHHHHHHHHHCSHHHHHHCCHHHHTTSTTCCHHHHHHHHHHHHSHHHHHHHHHHHHTTCBCCC
T ss_pred CchhHHHHHHHHHHcCCHHHHHccCHHHHhcCCCccHHHHHHHHHHHcCHHHHHHHHHHHHcCCCCCC
Confidence 122333332223333333222221 2245899999999999999887754 688999888876653
No 32
>1kft_A UVRC, excinuclease ABC subunit C; helix-hairpin-helix, HHH domain, DNA-binding domain, DNA binding protein; NMR {Escherichia coli} SCOP: a.60.2.3
Probab=92.80 E-value=0.043 Score=44.24 Aligned_cols=28 Identities=29% Similarity=0.529 Sum_probs=24.3
Q ss_pred CCCCCCccHHHHHHHHHHcCCHHHHHHH
Q psy1206 141 CDSIRGIGPKRAIELIKEHRSIEKILEN 168 (531)
Q Consensus 141 ~pGIpGIG~ktA~kLI~~~~sle~il~~ 168 (531)
+.+|||||+++|.+|+..|++++++.+.
T Consensus 26 L~~I~gIG~~~A~~Ll~~fgsl~~l~~a 53 (78)
T 1kft_A 26 LETIEGVGPKRRQMLLKYMGGLQGLRNA 53 (78)
T ss_dssp GGGCTTCSSSHHHHHHHHHSCHHHHHHC
T ss_pred HhcCCCCCHHHHHHHHHHcCCHHHHHHC
Confidence 3489999999999999999998887643
No 33
>1z00_A DNA excision repair protein ERCC-1; helix-hairpin-helix, hydrolase; HET: DNA; NMR {Homo sapiens} SCOP: a.60.2.5
Probab=92.65 E-value=0.077 Score=43.75 Aligned_cols=26 Identities=12% Similarity=0.397 Sum_probs=23.4
Q ss_pred CCCCCccHHHHHHHHHHcCCHHHHHH
Q psy1206 142 DSIRGIGPKRAIELIKEHRSIEKILE 167 (531)
Q Consensus 142 pGIpGIG~ktA~kLI~~~~sle~il~ 167 (531)
.+|||||+++|.+|+..|+|++++..
T Consensus 22 ~~IpgIG~~~A~~Ll~~fgsl~~l~~ 47 (89)
T 1z00_A 22 TTVKSVNKTDSQTLLTTFGSLEQLIA 47 (89)
T ss_dssp TTSSSCCHHHHHHHHHHTCBHHHHHH
T ss_pred HcCCCCCHHHHHHHHHHCCCHHHHHh
Confidence 47999999999999999999888764
No 34
>3fqd_A Protein DHP1, 5'-3' exoribonuclease 2; protein-protein complex, exonuclease, hydrolase, mRNA proces nuclease, nucleus, rRNA processing, transcription; 2.20A {Schizosaccharomyces pombe}
Probab=92.47 E-value=0.18 Score=57.68 Aligned_cols=95 Identities=15% Similarity=0.229 Sum_probs=63.0
Q ss_pred CCccccC----CCchhHHHHHHHHc---------CCEEEEEcCCCccccccC----C--eEEEec-cccCc---------
Q psy1206 55 REEKRKA----PCEAEAQCAAMVKA---------GKVYATATEDMDALTFGS----N--ILLRHM-TFSEA--------- 105 (531)
Q Consensus 55 gIp~vvA----PyEADAq~A~L~r~---------G~vd~ViSeDsDlL~fg~----~--~Vi~~l-~~~~~--------- 105 (531)
++.+|.+ |+|+|.-|....|. ....+|.+.|+|++++|- + .|+|.- .+.++
T Consensus 195 ~~~VIlSd~~vPGEGEHKIm~fIR~~r~~p~ydpN~~HcIyGlDADLImL~LatHep~f~ILRE~v~~~~~q~~~~~~~~ 274 (899)
T 3fqd_A 195 NVRFILSDASVPGEGEHKIMEFIRSQRVKPEYDPNTHHVVYGLDADLIMLGLATHEPHFRVLREDVFFQQGSTKKTKEER 274 (899)
T ss_dssp TCEEEEECTTSCSCHHHHHHHHHHHHHTSTTSCTTCCEEEECCCTTHHHHHHHTTCSSEEEEEECCC---------CTTT
T ss_pred cceEEEeCCCCCCccHHHHHHHHHHHhcCCCCCCCCeEEEEccCccHhHHhhhccCCceEEEeeecccCcCccccchhhh
Confidence 5677753 89999998877653 356899999999999983 3 346532 11100
Q ss_pred ----------------ccCCcEEecHHHHHHh----C-------CCC----HHHHHHHHhHcCCCCCCCCCCccH
Q psy1206 106 ----------------RKLPVQEFHLEKVLEG----M-------ELS----HEEFIDLCILLGCDYCDSIRGIGP 149 (531)
Q Consensus 106 ----------------~~~~v~~~~~~~i~~~----l-------glt----~eqfid~~iL~G~DY~pGIpGIG~ 149 (531)
...++..+++.-+++- + .++ .+.||.+|.|+|.||+|++|.+.+
T Consensus 275 ~~~~k~~~~~~~~~~~~~~~f~~l~i~iLREYL~~E~~~~~~~f~~d~ERiIDDfVfmcFfvGNDFLPhlP~l~I 349 (899)
T 3fqd_A 275 LGIKRLDDVSETNKVPVKKPFIWLNVSILREYLEVELYVPNLPFPFDLERAIDDWVFFIFFVGNDFLPHLPSLDI 349 (899)
T ss_dssp TTCCBTTC----------CCEEEEEHHHHHHHHHHHHCCTTCSSCCCHHHHHHHHHHHGGGGCCSSSCCCTTCCG
T ss_pred ccccccccccccccccccCceEEEeHHHHHHHHHHHhcccCCCCCchhhhhhhhhhhhhHhhCcccCCCCCccCc
Confidence 0023456666655442 2 233 458888999999999999998765
No 35
>2a1j_B DNA excision repair protein ERCC-1; XPF, xeroderma pigmentosum, DNA repair, endonuclease, helix-hairpin-helix, DNA binding protein; HET: DNA; 2.70A {Homo sapiens} SCOP: a.60.2.5
Probab=91.67 E-value=0.11 Score=43.12 Aligned_cols=25 Identities=12% Similarity=0.413 Sum_probs=22.4
Q ss_pred CCCCCccHHHHHHHHHHcCCHHHHH
Q psy1206 142 DSIRGIGPKRAIELIKEHRSIEKIL 166 (531)
Q Consensus 142 pGIpGIG~ktA~kLI~~~~sle~il 166 (531)
.+|||||+++|.+|+..|+++++++
T Consensus 35 ~~IpgIG~~~A~~Ll~~fgs~~~l~ 59 (91)
T 2a1j_B 35 TTVKSVNKTDSQTLLTTFGSLEQLI 59 (91)
T ss_dssp TTSTTCCHHHHHHHHHHHSSHHHHH
T ss_pred HcCCCCCHHHHHHHHHHCCCHHHHH
Confidence 4789999999999999999987765
No 36
>3b0x_A DNA polymerase beta family (X family); structural genomics, riken structural genomics/proteomics in RSGI, polxc, PHP, DRP lyase; HET: DNA DGT; 1.36A {Thermus thermophilus} PDB: 3au2_A* 3au6_A* 3auo_A* 3b0y_A*
Probab=91.17 E-value=0.24 Score=54.28 Aligned_cols=27 Identities=33% Similarity=0.528 Sum_probs=23.1
Q ss_pred CCCCccHHHHHHHHHH--cCCHHHHHHHh
Q psy1206 143 SIRGIGPKRAIELIKE--HRSIEKILENI 169 (531)
Q Consensus 143 GIpGIG~ktA~kLI~~--~~sle~il~~l 169 (531)
+|+|||||+|.+++.. ..|++++...+
T Consensus 97 ~v~GvGpk~A~~~~~~lg~~~~~~l~~a~ 125 (575)
T 3b0x_A 97 EVPGVGPKTARLLYEGLGIDSLEKLKAAL 125 (575)
T ss_dssp TSTTTCHHHHHHHHHTSCCCSHHHHHHHH
T ss_pred cCCCcCHHHHHHHHHhcCCCCHHHHHHHH
Confidence 6899999999999996 57888887765
No 37
>2w9m_A Polymerase X; SAXS, DNA repair, DNA polymerase, DNA replication; 2.46A {Deinococcus radiodurans}
Probab=91.08 E-value=0.23 Score=54.49 Aligned_cols=28 Identities=32% Similarity=0.509 Sum_probs=23.9
Q ss_pred CCCCCccHHHHHHHHHH-cCCHHHHHHHh
Q psy1206 142 DSIRGIGPKRAIELIKE-HRSIEKILENI 169 (531)
Q Consensus 142 pGIpGIG~ktA~kLI~~-~~sle~il~~l 169 (531)
-+|||||+|+|.+|+.. +.|++++.+.+
T Consensus 100 ~~v~GVGpk~A~~i~~~G~~s~edL~~a~ 128 (578)
T 2w9m_A 100 LGVRGLGPKKIRSLWLAGIDSLERLREAA 128 (578)
T ss_dssp TTSTTCCHHHHHHHHHTTCCSHHHHHHHH
T ss_pred hCCCCcCHHHHHHHHHcCCCCHHHHHHHH
Confidence 47999999999999986 67888887765
No 38
>2owo_A DNA ligase; protein-DNA complex, ligase-DNA complex; HET: DNA OMC AMP; 2.30A {Escherichia coli}
Probab=89.89 E-value=0.36 Score=54.08 Aligned_cols=60 Identities=13% Similarity=0.092 Sum_probs=36.1
Q ss_pred CCChhhhHhHHhhhhhhhhhc--cCccccCCCCCchHHHHHHHHhhccHH--HHHHHHhhCCCC
Q psy1206 219 GIGPKRAIELLYSFIDLCILL--GCDYCDSIRGIGPKRAIELIKEHRSIE--KILENIDTKKYT 278 (531)
Q Consensus 219 ~~Gp~~~~el~e~F~~~CiLs--GCDY~~~i~giG~k~A~kli~k~~s~~--~vi~~l~~~~~~ 278 (531)
+.|+..+..|.+.|-.+--|. .-+-+..++|||+++|..++.-+...+ .+++.|...|+.
T Consensus 519 ~VG~~~Ak~La~~Fgsl~~l~~As~eeL~~i~GIG~~~A~sI~~ff~~~~~~~~i~~L~~~gv~ 582 (671)
T 2owo_A 519 EVGEATAAGLAAYFGTLEALEAASIEELQKVPDVGIVVASHVHNFFAEESNRNVISELLAEGVH 582 (671)
T ss_dssp TCCHHHHHHHHHHHCSHHHHHTCCHHHHTTSTTCCHHHHHHHHHHHTCHHHHHHHHHHHHHTCB
T ss_pred CccHHHHHHHHHHcCCHHHHHhCCHHHHhhcCCCCHHHHHHHHHHHHhHHHHHHHHHHHHcCCc
Confidence 444444444444443332221 113356899999999999998877643 577777655554
No 39
>3sgi_A DNA ligase; HET: DNA AMP; 3.50A {Mycobacterium tuberculosis}
Probab=89.86 E-value=0.06 Score=59.66 Aligned_cols=36 Identities=14% Similarity=0.207 Sum_probs=0.0
Q ss_pred ccCCCCCchHHHHHHHHhhccHH--HHHHHHhhCCCCC
Q psy1206 244 CDSIRGIGPKRAIELIKEHRSIE--KILENIDTKKYTV 279 (531)
Q Consensus 244 ~~~i~giG~k~A~kli~k~~s~~--~vi~~l~~~~~~v 279 (531)
+..|+|||+++|-.++.-+...+ .+++.|...|+.+
T Consensus 563 L~~I~GIG~~~A~sI~~ff~~~~n~~~i~~L~~~Gv~~ 600 (615)
T 3sgi_A 563 LAAVEGVGPTIAAAVTEWFAVDWHREIVDKWRAAGVRM 600 (615)
T ss_dssp --------------------------------------
T ss_pred HhhCCCCCHHHHHHHHHHHcCHHHHHHHHHHHHcCCCc
Confidence 45789999999999887777654 4777776555443
No 40
>1kft_A UVRC, excinuclease ABC subunit C; helix-hairpin-helix, HHH domain, DNA-binding domain, DNA binding protein; NMR {Escherichia coli} SCOP: a.60.2.3
Probab=89.73 E-value=0.16 Score=40.82 Aligned_cols=28 Identities=29% Similarity=0.529 Sum_probs=24.4
Q ss_pred ccCCCCCchHHHHHHHHhhccHHHHHHH
Q psy1206 244 CDSIRGIGPKRAIELIKEHRSIEKILEN 271 (531)
Q Consensus 244 ~~~i~giG~k~A~kli~k~~s~~~vi~~ 271 (531)
+..|||||+++|.+|+..+++++.+..+
T Consensus 26 L~~I~gIG~~~A~~Ll~~fgsl~~l~~a 53 (78)
T 1kft_A 26 LETIEGVGPKRRQMLLKYMGGLQGLRNA 53 (78)
T ss_dssp GGGCTTCSSSHHHHHHHHHSCHHHHHHC
T ss_pred HhcCCCCCHHHHHHHHHHcCCHHHHHHC
Confidence 4579999999999999999999887654
No 41
>3pie_A 5'->3' exoribonuclease (XRN1); beta berrel, tudor domain, chromo domain, mRNA turnover, RRN processing, RNA binding, DNA binding; 2.90A {Kluyveromyces lactis} PDB: 3pif_A
Probab=89.56 E-value=0.27 Score=57.85 Aligned_cols=96 Identities=21% Similarity=0.269 Sum_probs=62.7
Q ss_pred CCccccC----CCchhHHHHHHHHc---------CCEEEEEcCCCccccccC----Ce--EEEec-cccCcc-------c
Q psy1206 55 REEKRKA----PCEAEAQCAAMVKA---------GKVYATATEDMDALTFGS----NI--LLRHM-TFSEAR-------K 107 (531)
Q Consensus 55 gIp~vvA----PyEADAq~A~L~r~---------G~vd~ViSeDsDlL~fg~----~~--Vi~~l-~~~~~~-------~ 107 (531)
++.++.+ |+|+|.-|....|. ....+|.+.|+|++++|- ++ |+|.- .+.... .
T Consensus 163 ~~~vi~S~~~vPGEGEhKIm~~IR~~r~~p~y~pn~~H~IyG~DADLImL~L~thep~f~iLRe~v~f~~~~~~~~~~~~ 242 (1155)
T 3pie_A 163 NVKVIFSGHEVPGEGQHKIMDYIRAIRAQEDYNPNTRHCIYGLDADLIILGLSTHDHHFCLLREEVTFGKRSSSVKTLET 242 (1155)
T ss_pred ccEEEEeCCCCCCccHHHHHHHHHHhccCCCCCCCCeEEEeccChhHHHhhhccCCCcEEEEeeccccCccccccccccc
Confidence 4666643 89999988877653 246899999999999983 22 45542 121110 1
Q ss_pred CCcEEecHHHHHHhC-------------CCC----HHHHHHHHhHcCCCCCCCCCCccHH
Q psy1206 108 LPVQEFHLEKVLEGM-------------ELS----HEEFIDLCILLGCDYCDSIRGIGPK 150 (531)
Q Consensus 108 ~~v~~~~~~~i~~~l-------------glt----~eqfid~~iL~G~DY~pGIpGIG~k 150 (531)
.++..+++.-+++.+ .++ .+.|+.+|.|+|.||+|++|.+.+.
T Consensus 243 ~~f~~l~i~~LREyL~~ef~~~~~~~~~~~d~ERiiDDfVflcf~vGNDFLPhlP~l~I~ 302 (1155)
T 3pie_A 243 QNFFLLHLSILREYLALEFEEITDSVQFEYDFERVLDDFIFVLFTIGNDFLPNLPDLHLK 302 (1155)
T ss_pred CCeEEEEHHHHHHHHHHHHHhhccccCCCccHhHhhcceeeehhhhCcccCCCCCccCcC
Confidence 234556665443321 233 3467778999999999999998654
No 42
>2nrt_A Uvrabc system protein C; UVRC, endonuclease, RNAse H, helix hairpin helix, NER, hydrolase; 1.50A {Thermotoga maritima} PDB: 2nrv_A 2nrw_A 2nrx_A 2nrz_A
Probab=89.39 E-value=0.17 Score=49.31 Aligned_cols=26 Identities=42% Similarity=0.690 Sum_probs=23.9
Q ss_pred CCCCCccHHHHHHHHHHcCCHHHHHH
Q psy1206 142 DSIRGIGPKRAIELIKEHRSIEKILE 167 (531)
Q Consensus 142 pGIpGIG~ktA~kLI~~~~sle~il~ 167 (531)
.||||||+++|.+|+++|+|++++.+
T Consensus 171 dgIpGIG~k~ak~Ll~~FgSl~~i~~ 196 (220)
T 2nrt_A 171 DNVPGIGPIRKKKLIEHFGSLENIRS 196 (220)
T ss_dssp TTSTTCCHHHHHHHHHHHCSHHHHHT
T ss_pred cCCCCcCHHHHHHHHHHcCCHHHHHh
Confidence 68999999999999999999988754
No 43
>1dgs_A DNA ligase; AMP complex, NAD+-dependent; HET: DNA AMP; 2.90A {Thermus filiformis} SCOP: a.60.2.2 b.40.4.6 d.142.2.2 PDB: 1v9p_A*
Probab=88.24 E-value=0.4 Score=53.66 Aligned_cols=35 Identities=6% Similarity=0.172 Sum_probs=26.9
Q ss_pred ccCCCCCchHHHHHHHHhhccHH--HHHHHHhhCCCC
Q psy1206 244 CDSIRGIGPKRAIELIKEHRSIE--KILENIDTKKYT 278 (531)
Q Consensus 244 ~~~i~giG~k~A~kli~k~~s~~--~vi~~l~~~~~~ 278 (531)
+..++|||+++|-.++.-+...+ .+++.|...|+.
T Consensus 541 L~~I~GIG~~~A~sI~~ff~~~~~~~~i~~L~~~gv~ 577 (667)
T 1dgs_A 541 LIEVEEVGELTARAILETLKDPAFRDLVRRLKEAGVS 577 (667)
T ss_dssp HHTSTTCCHHHHHHHHHHHHCHHHHHHHHHHHHTTCC
T ss_pred HHhccCcCHHHHHHHHHHHhhHHHHHHHHHHHHcCCc
Confidence 45799999999999998887653 577777655554
No 44
>1z00_A DNA excision repair protein ERCC-1; helix-hairpin-helix, hydrolase; HET: DNA; NMR {Homo sapiens} SCOP: a.60.2.5
Probab=87.70 E-value=0.3 Score=40.12 Aligned_cols=28 Identities=11% Similarity=0.348 Sum_probs=24.5
Q ss_pred ccCCCCCchHHHHHHHHhhccHHHHHHH
Q psy1206 244 CDSIRGIGPKRAIELIKEHRSIEKILEN 271 (531)
Q Consensus 244 ~~~i~giG~k~A~kli~k~~s~~~vi~~ 271 (531)
+.+|||||+++|.+|+..+++++.++..
T Consensus 21 L~~IpgIG~~~A~~Ll~~fgsl~~l~~a 48 (89)
T 1z00_A 21 LTTVKSVNKTDSQTLLTTFGSLEQLIAA 48 (89)
T ss_dssp HTTSSSCCHHHHHHHHHHTCBHHHHHHC
T ss_pred HHcCCCCCHHHHHHHHHHCCCHHHHHhC
Confidence 4579999999999999999999887654
No 45
>1x2i_A HEF helicase/nuclease; alpha helix, helix-hairpin-helix DNA binding domain, homodimer, hydrolase; 1.45A {Pyrococcus furiosus} SCOP: a.60.2.5
Probab=87.56 E-value=0.32 Score=38.05 Aligned_cols=28 Identities=18% Similarity=0.374 Sum_probs=24.3
Q ss_pred ccCCCCCchHHHHHHHHhhccHHHHHHH
Q psy1206 244 CDSIRGIGPKRAIELIKEHRSIEKILEN 271 (531)
Q Consensus 244 ~~~i~giG~k~A~kli~k~~s~~~vi~~ 271 (531)
+.+|||||+++|.+|+..+++++.++.+
T Consensus 16 L~~i~giG~~~a~~Ll~~fgs~~~l~~a 43 (75)
T 1x2i_A 16 VEGLPHVSATLARRLLKHFGSVERVFTA 43 (75)
T ss_dssp HTTSTTCCHHHHHHHHHHHCSHHHHHHC
T ss_pred HcCCCCCCHHHHHHHHHHcCCHHHHHhC
Confidence 3579999999999999999999887654
No 46
>2a1j_B DNA excision repair protein ERCC-1; XPF, xeroderma pigmentosum, DNA repair, endonuclease, helix-hairpin-helix, DNA binding protein; HET: DNA; 2.70A {Homo sapiens} SCOP: a.60.2.5
Probab=85.02 E-value=0.54 Score=38.84 Aligned_cols=27 Identities=11% Similarity=0.364 Sum_probs=23.7
Q ss_pred ccCCCCCchHHHHHHHHhhccHHHHHH
Q psy1206 244 CDSIRGIGPKRAIELIKEHRSIEKILE 270 (531)
Q Consensus 244 ~~~i~giG~k~A~kli~k~~s~~~vi~ 270 (531)
+..|||||+++|.+|+..+++++.++.
T Consensus 34 L~~IpgIG~~~A~~Ll~~fgs~~~l~~ 60 (91)
T 2a1j_B 34 LTTVKSVNKTDSQTLLTTFGSLEQLIA 60 (91)
T ss_dssp HTTSTTCCHHHHHHHHHHHSSHHHHHS
T ss_pred HHcCCCCCHHHHHHHHHHCCCHHHHHh
Confidence 457999999999999999999987764
No 47
>3c65_A Uvrabc system protein C; UVRC, endonuclease, nucleotide excision repair, DNA repair, RNAse H, cytoplasm, DNA damage, DNA excision; 1.90A {Bacillus stearothermophilus}
Probab=84.29 E-value=0.2 Score=48.99 Aligned_cols=28 Identities=36% Similarity=0.539 Sum_probs=0.0
Q ss_pred CCCCCCccHHHHHHHHHHcCCHHHHHHH
Q psy1206 141 CDSIRGIGPKRAIELIKEHRSIEKILEN 168 (531)
Q Consensus 141 ~pGIpGIG~ktA~kLI~~~~sle~il~~ 168 (531)
+.+|||||+++|.+|++.|+|++++.+.
T Consensus 175 L~~IpGIG~k~ak~Ll~~FGSl~~i~~A 202 (226)
T 3c65_A 175 LDDIPGVGEKRKKALLNYFGSVKKMKEA 202 (226)
T ss_dssp ----------------------------
T ss_pred ccccCCCCHHHHHHHHHHhCCHHHHHhC
Confidence 3689999999999999999999887543
No 48
>2bgw_A XPF endonuclease; hydrolase, structure specific endonuclease, nucleotide excision repair; 2.8A {Aeropyrum pernix} SCOP: a.60.2.5 c.52.1.20 PDB: 2bhn_A
Probab=83.87 E-value=0.42 Score=45.64 Aligned_cols=25 Identities=28% Similarity=0.567 Sum_probs=22.5
Q ss_pred CCCCCccHHHHHHHHHHcCCHHHHH
Q psy1206 142 DSIRGIGPKRAIELIKEHRSIEKIL 166 (531)
Q Consensus 142 pGIpGIG~ktA~kLI~~~~sle~il 166 (531)
.+|||||+++|..|+..|+|+++++
T Consensus 165 ~~i~gVg~~~a~~Ll~~fgs~~~l~ 189 (219)
T 2bgw_A 165 QSFPGIGRRTAERILERFGSLERFF 189 (219)
T ss_dssp HTSTTCCHHHHHHHHHHHSSHHHHT
T ss_pred hcCCCCCHHHHHHHHHHcCCHHHHH
Confidence 3799999999999999999987764
No 49
>1dgs_A DNA ligase; AMP complex, NAD+-dependent; HET: DNA AMP; 2.90A {Thermus filiformis} SCOP: a.60.2.2 b.40.4.6 d.142.2.2 PDB: 1v9p_A*
Probab=80.89 E-value=0.81 Score=51.20 Aligned_cols=24 Identities=21% Similarity=0.508 Sum_probs=22.2
Q ss_pred CCCCCchHHHHHHHHhhccHHHHH
Q psy1206 246 SIRGIGPKRAIELIKEHRSIEKIL 269 (531)
Q Consensus 246 ~i~giG~k~A~kli~k~~s~~~vi 269 (531)
+|||||.++|.+|.+.|+|++++.
T Consensus 511 GI~~VG~~~Ak~La~~Fgsl~~l~ 534 (667)
T 1dgs_A 511 GLPGVGEVLARNLARRFGTMDRLL 534 (667)
T ss_dssp TCSSCCHHHHHHHHHTTSBHHHHT
T ss_pred ccCCccHHHHHHHHHHcCCHHHHH
Confidence 699999999999999999998864
No 50
>2nrt_A Uvrabc system protein C; UVRC, endonuclease, RNAse H, helix hairpin helix, NER, hydrolase; 1.50A {Thermotoga maritima} PDB: 2nrv_A 2nrw_A 2nrx_A 2nrz_A
Probab=79.88 E-value=0.78 Score=44.57 Aligned_cols=27 Identities=41% Similarity=0.646 Sum_probs=24.1
Q ss_pred ccCCCCCchHHHHHHHHhhccHHHHHH
Q psy1206 244 CDSIRGIGPKRAIELIKEHRSIEKILE 270 (531)
Q Consensus 244 ~~~i~giG~k~A~kli~k~~s~~~vi~ 270 (531)
+.+|||||+++|-+|++.|+|++++..
T Consensus 170 LdgIpGIG~k~ak~Ll~~FgSl~~i~~ 196 (220)
T 2nrt_A 170 LDNVPGIGPIRKKKLIEHFGSLENIRS 196 (220)
T ss_dssp HTTSTTCCHHHHHHHHHHHCSHHHHHT
T ss_pred ccCCCCcCHHHHHHHHHHcCCHHHHHh
Confidence 467999999999999999999988654
No 51
>4gfj_A Topoisomerase V; helix-hairpin-helix, DNA repair enzyme, DNA B isomerase; 2.91A {Methanopyrus kandleri AV19}
Probab=77.98 E-value=0.97 Score=47.86 Aligned_cols=28 Identities=39% Similarity=0.438 Sum_probs=25.2
Q ss_pred ccCCCCCchHHHHHHHHhhccHHHHHHH
Q psy1206 244 CDSIRGIGPKRAIELIKEHRSIEKILEN 271 (531)
Q Consensus 244 ~~~i~giG~k~A~kli~k~~s~~~vi~~ 271 (531)
+.+|||||+.+|.+|+.+|+|+++|..+
T Consensus 470 LtAIaGIGp~tAeRLLEkFGSVe~Vm~A 497 (685)
T 4gfj_A 470 LISIRGIDRERAERLLKKYGGYSKVREA 497 (685)
T ss_dssp HHTSTTCCHHHHHHHHHHHTSHHHHHHS
T ss_pred eeccCCCCHHHHHHHHHHhcCHHHHHhC
Confidence 3589999999999999999999998863
No 52
>1ixr_A Holliday junction DNA helicase RUVA; heterooligomeric complex, octameric RUVA, AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ANP; 3.30A {Thermus thermophilus} SCOP: a.60.2.1 b.40.4.2
Probab=76.70 E-value=0.88 Score=43.16 Aligned_cols=20 Identities=35% Similarity=0.599 Sum_probs=18.6
Q ss_pred cCCCCCchHHHHHHHHhhcc
Q psy1206 245 DSIRGIGPKRAIELIKEHRS 264 (531)
Q Consensus 245 ~~i~giG~k~A~kli~k~~s 264 (531)
.+|+|||||+|.++++.+++
T Consensus 75 ~~v~GIGpk~A~~iL~~f~~ 94 (191)
T 1ixr_A 75 LSVSGVGPKVALALLSALPP 94 (191)
T ss_dssp HSSSCCCHHHHHHHHHHSCH
T ss_pred hcCCCcCHHHHHHHHHhCCh
Confidence 46999999999999999998
No 53
>1cuk_A RUVA protein; DNA repair, SOS response, DNA-binding, DNA recombination; 1.90A {Escherichia coli} SCOP: a.5.1.1 a.60.2.1 b.40.4.2 PDB: 1hjp_A 1bdx_A* 1c7y_A 1d8l_A
Probab=73.64 E-value=0.98 Score=43.21 Aligned_cols=20 Identities=25% Similarity=0.511 Sum_probs=18.4
Q ss_pred cCCCCCchHHHHHHHHhhcc
Q psy1206 245 DSIRGIGPKRAIELIKEHRS 264 (531)
Q Consensus 245 ~~i~giG~k~A~kli~k~~s 264 (531)
.+|+|||||+|.++++.+++
T Consensus 76 ~~V~GIGpk~A~~iL~~f~~ 95 (203)
T 1cuk_A 76 IKTNGVGPKLALAILSGMSA 95 (203)
T ss_dssp HHSSSCCHHHHHHHHHHSCH
T ss_pred hcCCCcCHHHHHHHHhhCCh
Confidence 45999999999999999998
No 54
>4gfj_A Topoisomerase V; helix-hairpin-helix, DNA repair enzyme, DNA B isomerase; 2.91A {Methanopyrus kandleri AV19}
Probab=73.54 E-value=1.8 Score=45.79 Aligned_cols=25 Identities=44% Similarity=0.565 Sum_probs=23.2
Q ss_pred CCCCccHHHHHHHHHHcCCHHHHHH
Q psy1206 143 SIRGIGPKRAIELIKEHRSIEKILE 167 (531)
Q Consensus 143 GIpGIG~ktA~kLI~~~~sle~il~ 167 (531)
.|||||+++|-.|+.+|||++.+..
T Consensus 472 AIaGIGp~tAeRLLEkFGSVe~Vm~ 496 (685)
T 4gfj_A 472 SIRGIDRERAERLLKKYGGYSKVRE 496 (685)
T ss_dssp TSTTCCHHHHHHHHHHHTSHHHHHH
T ss_pred ccCCCCHHHHHHHHHHhcCHHHHHh
Confidence 4899999999999999999998876
No 55
>3h7i_A Ribonuclease H, RNAse H; BPT4 RNAse H, 5'-3' exonuclease, hydrolase, endonuclease; 1.50A {Enterobacteria phage T4} PDB: 2ihn_A 3h8w_A 3h8j_A 1tfr_A 3h8s_A
Probab=72.55 E-value=2.7 Score=42.69 Aligned_cols=72 Identities=15% Similarity=0.076 Sum_probs=47.3
Q ss_pred ceeeecccchHHHHHHHHhhcCccccCCCCCCcchhhhHHHHHHH-HHHc--CCee---EEeecCC-CCCcchHH----H
Q psy1206 318 RKICIDASMSLYQFLIAVRSEGNQLMSVDGEPTSHLMGTFYRTIR-LVEH--GLKP---IYVFDGK-PPTLKSGE----L 386 (531)
Q Consensus 318 k~iAIDa~~~lyqfl~~ir~~g~~l~~~~g~~tshl~g~~~R~~~-ll~~--gIkP---VfVFDG~-pp~lK~~~----~ 386 (531)
+.+-||+|..+|+.. + ..+++++|.+|+-+.|.|.+++. ++.. +.+| +++||+. .|....+. -
T Consensus 14 ~llLIDgssl~~ra~--~----~~f~~~~g~~tnav~ggf~~~L~~ll~~~k~~~P~~iavaFD~~~~~tfR~elyp~YK 87 (305)
T 3h7i_A 14 GICLIDFSQIALSTA--L----VNFPDKEKINLSMVRHLILNSIKFNVKKAKTLGYTKIVLCIDNAKSGYWRRDFAYYYK 87 (305)
T ss_dssp CEEEEEHHHHHHHHH--H----HHSCSSSCCCHHHHHHHHHHHHHHHHHHHHHTTCCEEEEECCCCTTCCHHHHHSTTTT
T ss_pred CEEEEeccHHHHHHH--H----HhcCCCCCcchHHHHHHHHHHHHHHHHhhhccCCCEEEEEecCCCCcchHhhhCHHhc
Confidence 578999999999953 2 13677889999999885555544 5443 2445 8999976 34444333 3
Q ss_pred HHHHHHHHH
Q psy1206 387 NKRMEKRED 395 (531)
Q Consensus 387 ~kR~~~r~~ 395 (531)
+.|....++
T Consensus 88 anR~~~Pee 96 (305)
T 3h7i_A 88 KNRGKAREE 96 (305)
T ss_dssp HHHHHHHHH
T ss_pred cCCCCCCHH
Confidence 445555554
No 56
>3c65_A Uvrabc system protein C; UVRC, endonuclease, nucleotide excision repair, DNA repair, RNAse H, cytoplasm, DNA damage, DNA excision; 1.90A {Bacillus stearothermophilus}
Probab=71.94 E-value=0.78 Score=44.72 Aligned_cols=28 Identities=36% Similarity=0.539 Sum_probs=0.0
Q ss_pred ccCCCCCchHHHHHHHHhhccHHHHHHH
Q psy1206 244 CDSIRGIGPKRAIELIKEHRSIEKILEN 271 (531)
Q Consensus 244 ~~~i~giG~k~A~kli~k~~s~~~vi~~ 271 (531)
+.+|||||+++|.+|++.|+|+++|..+
T Consensus 175 L~~IpGIG~k~ak~Ll~~FGSl~~i~~A 202 (226)
T 3c65_A 175 LDDIPGVGEKRKKALLNYFGSVKKMKEA 202 (226)
T ss_dssp ----------------------------
T ss_pred ccccCCCCHHHHHHHHHHhCCHHHHHhC
Confidence 4679999999999999999999887644
No 57
>2owo_A DNA ligase; protein-DNA complex, ligase-DNA complex; HET: DNA OMC AMP; 2.30A {Escherichia coli}
Probab=71.66 E-value=3.6 Score=46.02 Aligned_cols=26 Identities=23% Similarity=0.308 Sum_probs=23.3
Q ss_pred CCCCCchHHHHHHHHhhccHHHHHHH
Q psy1206 246 SIRGIGPKRAIELIKEHRSIEKILEN 271 (531)
Q Consensus 246 ~i~giG~k~A~kli~k~~s~~~vi~~ 271 (531)
+|||||+++|-.|.+.|+|++++..+
T Consensus 516 gi~~VG~~~Ak~La~~Fgsl~~l~~A 541 (671)
T 2owo_A 516 GIREVGEATAAGLAAYFGTLEALEAA 541 (671)
T ss_dssp TCTTCCHHHHHHHHHHHCSHHHHHTC
T ss_pred cccCccHHHHHHHHHHcCCHHHHHhC
Confidence 69999999999999999999987543
No 58
>2csb_A Topoisomerase V, TOP61; topoisomerase IB, helix-turn-helix, helix-H helix, HHH motif, three helix bundle, methanopyrus kandleri isomerase; 2.30A {Methanopyrus kandleri} SCOP: a.60.2.4 a.60.2.4 a.60.2.4 a.60.2.4 a.267.1.1 PDB: 2csd_A
Probab=69.50 E-value=5.5 Score=39.84 Aligned_cols=80 Identities=25% Similarity=0.365 Sum_probs=52.1
Q ss_pred CCCccHHHHHHHHHHcCCHHHHHHHhhhcCCCCCCCCcHHHHHHHhcCCCcCCCCCcccccccccccccccccccCCChh
Q psy1206 144 IRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGWLYKEARELFRHPEVADPETIEFIDLCILLGCDYCDSIRGIGPK 223 (531)
Q Consensus 144 IpGIG~ktA~kLI~~~~sle~il~~l~~~~~~ip~~f~~~~A~~~f~~p~V~d~~~~~~v~Ls~~~~~d~cesl~~~Gp~ 223 (531)
-.|+|-|||-.|++.||+.+.+-+-.+. |...+ ..+..+.|..
T Consensus 416 kegvgrktaerllrafgnpervkqlare--------feiek-----------------------------lasvegvger 458 (519)
T 2csb_A 416 KEGVGRKTAERLLRAFGNPERVKQLARE--------FEIEK-----------------------------LASVEGVGER 458 (519)
T ss_dssp STTCCHHHHHHHHHHHSSHHHHHHHHHT--------TCHHH-----------------------------HHTSTTCSHH
T ss_pred hcccchhHHHHHHHHhCCHHHHHHHHHH--------HhHHH-----------------------------HhhccchHHH
Confidence 4689999999999999999887544322 22111 0112334432
Q ss_pred hhHhHHhhhhhhhhhccCccccCCCCCchHHHHHHHHhhccHHHHH
Q psy1206 224 RAIELLYSFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKIL 269 (531)
Q Consensus 224 ~~~el~e~F~~~CiLsGCDY~~~i~giG~k~A~kli~k~~s~~~vi 269 (531)
.+.. ...|-.-+-||+||.-.+|-+|+++|+...+|-
T Consensus 459 vlrs---------lvpgyaslisirgidreraerllkkyggyskvr 495 (519)
T 2csb_A 459 VLRS---------LVPGYASLISIRGIDRERAERLLKKYGGYSKVR 495 (519)
T ss_dssp HHHH---------HSTTHHHHHTSTTCCHHHHHHHHHHHTSHHHHH
T ss_pred HHHH---------hccchhhheeeccccHHHHHHHHHHhCChhHHH
Confidence 2211 122333345899999999999999999987764
No 59
>2bgw_A XPF endonuclease; hydrolase, structure specific endonuclease, nucleotide excision repair; 2.8A {Aeropyrum pernix} SCOP: a.60.2.5 c.52.1.20 PDB: 2bhn_A
Probab=69.46 E-value=1.5 Score=41.64 Aligned_cols=27 Identities=26% Similarity=0.506 Sum_probs=23.5
Q ss_pred ccCCCCCchHHHHHHHHhhccHHHHHH
Q psy1206 244 CDSIRGIGPKRAIELIKEHRSIEKILE 270 (531)
Q Consensus 244 ~~~i~giG~k~A~kli~k~~s~~~vi~ 270 (531)
+.+|||||+++|.+++..+++++.++.
T Consensus 164 L~~i~gVg~~~a~~Ll~~fgs~~~l~~ 190 (219)
T 2bgw_A 164 LQSFPGIGRRTAERILERFGSLERFFT 190 (219)
T ss_dssp HHTSTTCCHHHHHHHHHHHSSHHHHTT
T ss_pred HhcCCCCCHHHHHHHHHHcCCHHHHHh
Confidence 347999999999999999999887753
No 60
>1s5l_U Photosystem II 12 kDa extrinsic protein; photosynthesis, oxygen-evolving, tetra- manganese, membrane; HET: CL1 PHO HEM PL9 LMT BCR; 3.50A {Thermosynechococcus elongatus}
Probab=68.86 E-value=1.3 Score=39.91 Aligned_cols=25 Identities=32% Similarity=0.510 Sum_probs=20.6
Q ss_pred CCCCccHHHHHHHHHH--cCCHHHHHH
Q psy1206 143 SIRGIGPKRAIELIKE--HRSIEKILE 167 (531)
Q Consensus 143 GIpGIG~ktA~kLI~~--~~sle~il~ 167 (531)
.+|||||++|-++|.. |.|+|++++
T Consensus 67 ~LpGiGp~~A~~II~~GpF~svedL~~ 93 (134)
T 1s5l_U 67 QYRGLYPTLAKLIVKNAPYESVEDVLN 93 (134)
T ss_dssp GSTTCTHHHHHHHHHTCCCSSGGGGGG
T ss_pred HCCCCCHHHHHHHHHcCCCCCHHHHHh
Confidence 5899999999999975 678877753
No 61
>2ziu_A MUS81 protein; helix-hairpin-helix, alternative splicing, DNA damage, DNA recombination, DNA repair, hydrolase, magnesium; 2.70A {Danio rerio} PDB: 2ziv_A 2ziw_A
Probab=65.53 E-value=4.9 Score=40.21 Aligned_cols=74 Identities=18% Similarity=0.249 Sum_probs=50.4
Q ss_pred HhhhhhhhhhccCccccCCCCCchHHHHHHHHhhccHHHHHHHHhhCCCCCCCcchHHHHHHHhcCCcccCccccccccc
Q psy1206 229 LYSFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGWLYKEARELFRHPEIADPETIELVAD 308 (531)
Q Consensus 229 ~e~F~~~CiLsGCDY~~~i~giG~k~A~kli~k~~s~~~vi~~l~~~~~~vP~~y~~~~A~~~F~~~~V~dP~~~~Lv~~ 308 (531)
.+.|..| +-.||||++++|..++.+|+|+..++++.+.-+- | .++ .+|+++
T Consensus 232 ~e~~~~m--------L~~IpGVs~~~A~~I~~~ypTp~~L~~Ay~~~~~--~-----~e~--------------~~lL~~ 282 (311)
T 2ziu_A 232 REVFARQ--------LMQISGVSGDKAAAVLEHYSTVSSLLQAYDKCSS--E-----TEK--------------EKLLSS 282 (311)
T ss_dssp HHHHHHH--------HTTBTTCCHHHHHHHHHHCSSHHHHHHHHHHCSS--H-----HHH--------------TTTTTT
T ss_pred HHHHHHH--------HHhccCCCHHHHHHHHHHCCCHHHHHHHHHhcCC--H-----HHH--------------HHHHHh
Confidence 5567766 6689999999999999999999999988864210 0 112 123332
Q ss_pred cCCCcccccceeeecccchHHHHHH
Q psy1206 309 VAPSSIRESRKICIDASMSLYQFLI 333 (531)
Q Consensus 309 ~aP~~i~~gk~iAIDa~~~lyqfl~ 333 (531)
...+ ..+|+|.-..|--||+|..
T Consensus 283 i~~g--~~~r~IG~~lS~kI~~~f~ 305 (311)
T 2ziu_A 283 VKYG--KLKRNLGPALSRTIYQLYC 305 (311)
T ss_dssp CEET--TTTEECHHHHHHHHHHHHH
T ss_pred cccC--CCCCCcCHHHHHHHHHHhc
Confidence 2111 2346777778888898875
No 62
>4glx_A DNA ligase; inhibitor, ligase-ligase inhibitor-DNA complex; HET: DNA 0XS; 1.90A {Escherichia coli}
Probab=61.56 E-value=12 Score=41.33 Aligned_cols=25 Identities=24% Similarity=0.324 Sum_probs=22.6
Q ss_pred CCCCCchHHHHHHHHhhccHHHHHH
Q psy1206 246 SIRGIGPKRAIELIKEHRSIEKILE 270 (531)
Q Consensus 246 ~i~giG~k~A~kli~k~~s~~~vi~ 270 (531)
+||+||..+|-.|.+.|+|++++..
T Consensus 516 GI~~vG~~~a~~La~~f~sl~~l~~ 540 (586)
T 4glx_A 516 GIREVGEATAAGLAAYFGTLEALEA 540 (586)
T ss_dssp TCTTCCHHHHHHHHHHHCSHHHHHH
T ss_pred CCCchhHHHHHHHHHHcCCHHHHHc
Confidence 6999999999999999999987764
No 63
>2duy_A Competence protein comea-related protein; helix-hairpin-helix, structural genomics, NPPSFA; 1.75A {Thermus thermophilus} SCOP: a.60.2.7
Probab=58.33 E-value=6.3 Score=30.99 Aligned_cols=39 Identities=26% Similarity=0.374 Sum_probs=18.2
Q ss_pred cccCCChhhhHhHHhhhhhhhhhccCccccCCCCCchHHHHHH
Q psy1206 216 SIRGIGPKRAIELLYSFIDLCILLGCDYCDSIRGIGPKRAIEL 258 (531)
Q Consensus 216 sl~~~Gp~~~~el~e~F~~~CiLsGCDY~~~i~giG~k~A~kl 258 (531)
.+.+.|+..+..+.+.+ ....=+-+..++|+|++++-++
T Consensus 31 ~ipGIG~~~A~~Il~~r----~~~s~~eL~~v~Gig~k~~~~i 69 (75)
T 2duy_A 31 ALPGIGPVLARRIVEGR----PYARVEDLLKVKGIGPATLERL 69 (75)
T ss_dssp TSTTCCHHHHHHHHHTC----CCSSGGGGGGSTTCCHHHHHHH
T ss_pred hCCCCCHHHHHHHHHHc----ccCCHHHHHhCCCCCHHHHHHH
Confidence 34455555555544433 1222233345566665555443
No 64
>2ziu_A MUS81 protein; helix-hairpin-helix, alternative splicing, DNA damage, DNA recombination, DNA repair, hydrolase, magnesium; 2.70A {Danio rerio} PDB: 2ziv_A 2ziw_A
Probab=57.48 E-value=6.6 Score=39.25 Aligned_cols=30 Identities=17% Similarity=0.393 Sum_probs=27.3
Q ss_pred CCCCCccHHHHHHHHHHcCCHHHHHHHhhh
Q psy1206 142 DSIRGIGPKRAIELIKEHRSIEKILENIDT 171 (531)
Q Consensus 142 pGIpGIG~ktA~kLI~~~~sle~il~~l~~ 171 (531)
-.||||++++|..|+.+|+|+..+++..+.
T Consensus 240 ~~IpGVs~~~A~~I~~~ypTp~~L~~Ay~~ 269 (311)
T 2ziu_A 240 MQISGVSGDKAAAVLEHYSTVSSLLQAYDK 269 (311)
T ss_dssp TTBTTCCHHHHHHHHHHCSSHHHHHHHHHH
T ss_pred HhccCCCHHHHHHHHHHCCCHHHHHHHHHh
Confidence 369999999999999999999999988865
No 65
>2ztd_A Holliday junction ATP-dependent DNA helicase RUVA; recombination, branch migration, DNA BIND oligomerization, acidic PIN; 2.40A {Mycobacterium tuberculosis} PDB: 2ztc_A 2zte_A 2h5x_A 1bvs_A
Probab=56.34 E-value=3.8 Score=39.48 Aligned_cols=28 Identities=29% Similarity=0.500 Sum_probs=22.6
Q ss_pred HHhhhhhhhhhccCccccCCCCCchHHHHHHHHhhcc
Q psy1206 228 LLYSFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRS 264 (531)
Q Consensus 228 l~e~F~~~CiLsGCDY~~~i~giG~k~A~kli~k~~s 264 (531)
..+.|+.+ -+++|||||+|.+++..++.
T Consensus 83 Er~lf~~L---------~sv~GIGpk~A~~Ils~~~~ 110 (212)
T 2ztd_A 83 TRDLFLTL---------LSVSGVGPRLAMAALAVHDA 110 (212)
T ss_dssp HHHHHHHH---------HTSTTCCHHHHHHHHHHSCH
T ss_pred HHHHHHHh---------cCcCCcCHHHHHHHHHhCCH
Confidence 35667655 45999999999999998876
No 66
>2i5h_A Hypothetical protein AF1531; PFAM:DUF655, PSI-2, structural genomics, protein structure initiative; 1.74A {Archaeoglobus fulgidus} SCOP: e.71.1.1
Probab=54.90 E-value=8.6 Score=36.83 Aligned_cols=48 Identities=19% Similarity=0.371 Sum_probs=34.2
Q ss_pred CCCHHHHHHHHhHcC---CCC--CCCCCCccHHHHHHHHHH-----cCCHHHHHHHhh
Q psy1206 123 ELSHEEFIDLCILLG---CDY--CDSIRGIGPKRAIELIKE-----HRSIEKILENID 170 (531)
Q Consensus 123 glt~eqfid~~iL~G---~DY--~pGIpGIG~ktA~kLI~~-----~~sle~il~~l~ 170 (531)
.-....|++|.--++ .+. +..+||||+++|.++|.. |.|++++.+.+.
T Consensus 111 ~~~E~~fv~f~n~a~pITA~~~eL~~LpGIG~k~A~~IIeyRe~G~F~s~eDL~~RV~ 168 (205)
T 2i5h_A 111 KQDEKKYVDFFNKADSITTRMHQLELLPGVGKKMMWAIIEERKKRPFESFEDIAQRVK 168 (205)
T ss_dssp HTTHHHHHHHHC--CCBCSSSBGGGGSTTCCHHHHHHHHHHHHHSCCCSHHHHHHHST
T ss_pred HhchhhhhhhccccCCccCCHHHHhcCCCcCHHHHHHHHHHHhcCCCCCHHHHHHhcC
Confidence 346788888765444 222 348999999999999962 889999877554
No 67
>1vq8_Y 50S ribosomal protein L32E; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: c.9.2.1 PDB: 1vq4_Y* 1vq5_Y* 1vq6_Y* 1vq7_Y* 1s72_Y* 1vq9_Y* 1vqk_Y* 1vql_Y* 1vqm_Y* 1vqn_Y* 1vqo_Y* 1vqp_Y* 1yhq_Y* 1yi2_Y* 1yij_Y* 1yit_Y* 1yj9_Y* 1yjn_Y* 1yjw_Y* 2otj_Y* ...
Probab=54.82 E-value=2.6 Score=41.40 Aligned_cols=26 Identities=31% Similarity=0.549 Sum_probs=0.0
Q ss_pred CCCCCCccHHHHHHHHHH-cCCHHHHH
Q psy1206 141 CDSIRGIGPKRAIELIKE-HRSIEKIL 166 (531)
Q Consensus 141 ~pGIpGIG~ktA~kLI~~-~~sle~il 166 (531)
+..|||||+++|.+|+.. |+|+++|.
T Consensus 17 L~~IpGIGpk~a~~Ll~~gf~sve~L~ 43 (241)
T 1vq8_Y 17 LTDISGVGPSKAESLREAGFESVEDVR 43 (241)
T ss_dssp ---------------------------
T ss_pred HhcCCCCCHHHHHHHHHcCCCCHHHHH
Confidence 347999999999999997 88888774
No 68
>3arc_U Photosystem II 12 kDa extrinsic protein; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 3bz1_U* 2axt_U* 3bz2_U* 3kzi_U* 3prq_U* 3prr_U* 3a0b_U* 3a0h_U*
Probab=54.14 E-value=3.4 Score=35.03 Aligned_cols=25 Identities=32% Similarity=0.448 Sum_probs=20.0
Q ss_pred CCCCCccHHHHHHHHHH--cCCHHHHH
Q psy1206 142 DSIRGIGPKRAIELIKE--HRSIEKIL 166 (531)
Q Consensus 142 pGIpGIG~ktA~kLI~~--~~sle~il 166 (531)
..|||||+++|.++|.. |.|++++.
T Consensus 29 ~~lpGIG~~~A~~IV~~GpF~s~edL~ 55 (97)
T 3arc_U 29 IQYRGLYPTLAKLIVKNAPYESVEDVL 55 (97)
T ss_dssp GGSTTCTTHHHHHHHHHCCCSSGGGGG
T ss_pred hHCCCCCHHHHHHHHHcCCCCCHHHHH
Confidence 36899999999999984 56766654
No 69
>2bcq_A DNA polymerase lambda; misalignment, extrahelical, mutagenesis, mutation, deletion, streisinger, slippage, transferase, lyase/DNA complex; HET: DNA; 1.65A {Homo sapiens} SCOP: a.60.6.1 a.60.12.1 d.218.1.2 PDB: 1xsl_A* 2bcr_A* 2bcs_A* 2bcu_A* 2bcv_A* 2gws_A* 3c5g_A* 3c5f_A* 2pfn_A* 1xsp_A* 1xsn_A* 2pfo_A* 2pfp_A* 2pfq_A* 3hw8_A* 3hwt_A* 1rzt_A* 3hx0_A* 3mdc_A* 3mda_A* ...
Probab=51.41 E-value=9.1 Score=39.07 Aligned_cols=28 Identities=32% Similarity=0.420 Sum_probs=23.6
Q ss_pred CCCCCccHHHHHHHHHH-cCCHHHHHHHh
Q psy1206 142 DSIRGIGPKRAIELIKE-HRSIEKILENI 169 (531)
Q Consensus 142 pGIpGIG~ktA~kLI~~-~~sle~il~~l 169 (531)
-.|||||+|||.+|..+ +.|++++.+..
T Consensus 99 ~~v~GiG~k~a~~l~~~Gi~tledL~~a~ 127 (335)
T 2bcq_A 99 SNIWGAGTKTAQMWYQQGFRSLEDIRSQA 127 (335)
T ss_dssp HTSTTCCHHHHHHHHHTTCCSHHHHHHHC
T ss_pred hcCCCcCHHHHHHHHHcCCCCHHHHHHHh
Confidence 47999999999999886 56999988754
No 70
>2duy_A Competence protein comea-related protein; helix-hairpin-helix, structural genomics, NPPSFA; 1.75A {Thermus thermophilus} SCOP: a.60.2.7
Probab=49.17 E-value=7.9 Score=30.41 Aligned_cols=18 Identities=28% Similarity=0.523 Sum_probs=15.4
Q ss_pred CCCCCccHHHHHHHHHHc
Q psy1206 142 DSIRGIGPKRAIELIKEH 159 (531)
Q Consensus 142 pGIpGIG~ktA~kLI~~~ 159 (531)
..|||||+++|.+|+..+
T Consensus 30 ~~ipGIG~~~A~~Il~~r 47 (75)
T 2duy_A 30 MALPGIGPVLARRIVEGR 47 (75)
T ss_dssp TTSTTCCHHHHHHHHHTC
T ss_pred HhCCCCCHHHHHHHHHHc
Confidence 357999999999999864
No 71
>1jms_A Terminal deoxynucleotidyltransferase; polymerase; 2.36A {Mus musculus} SCOP: a.60.6.1 a.60.12.1 d.218.1.2 PDB: 1kdh_A* 1kej_A*
Probab=48.97 E-value=9.9 Score=39.54 Aligned_cols=25 Identities=32% Similarity=0.480 Sum_probs=22.1
Q ss_pred CCCCccHHHHHHHHHH-cCCHHHHHH
Q psy1206 143 SIRGIGPKRAIELIKE-HRSIEKILE 167 (531)
Q Consensus 143 GIpGIG~ktA~kLI~~-~~sle~il~ 167 (531)
.|||||+|||.+|..+ +.|++++.+
T Consensus 125 ~I~GvGpk~a~~ly~~Gi~tledL~~ 150 (381)
T 1jms_A 125 SVFGVGLKTAEKWFRMGFRTLSKIQS 150 (381)
T ss_dssp TSTTCCHHHHHHHHHTTCCSHHHHHH
T ss_pred ccCCCCHHHHHHHHHcCCCcHHHHHh
Confidence 7899999999999986 569998886
No 72
>3iz6_M 40S ribosomal protein S18 (S13P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=48.76 E-value=13 Score=34.01 Aligned_cols=52 Identities=17% Similarity=0.434 Sum_probs=36.5
Q ss_pred hhhhhhhhhccCcccc---------CCCCCchHHHHHHHHhhc-------------cHHHHHHHHhh-CCCCCCC
Q psy1206 230 YSFIDLCILLGCDYCD---------SIRGIGPKRAIELIKEHR-------------SIEKILENIDT-KKYTVPE 281 (531)
Q Consensus 230 e~F~~~CiLsGCDY~~---------~i~giG~k~A~kli~k~~-------------s~~~vi~~l~~-~~~~vP~ 281 (531)
|.|.+|.-++|.|.-. .|.|||..+|..++++.+ .+++|...+.. ..++||+
T Consensus 7 ~~~~~m~RI~g~~i~~~k~v~~ALt~I~GIG~~~A~~I~~~~gid~~~r~g~Lt~~ei~~l~~~i~~~~~~~ip~ 81 (152)
T 3iz6_M 7 EEFQHILRVLNTNVDGKQKIMFALTSIKGVGRRFSNIVCKKADIDMNKRAGELSAEEMDRLMAVVHNPRQFKVPD 81 (152)
T ss_dssp CSCCCCCCTTTTCCCCSSBHHHHHTTSTTCCHHHHHHHHHHHTCCSSSBTTTSCHHHHHHHHHHHHSCSSCCCCC
T ss_pred HHHHHHHHHcCCcCCCCcEeHhhhhhccCcCHHHHHHHHHHcCCCCCcEeCcCCHHHHHHHHHHHHhhcccCcch
Confidence 3577777778877654 488999999999999876 12445555543 3467774
No 73
>2fmp_A DNA polymerase beta; nucleotidyl transferase, transferase/DNA complex; HET: DNA DOC DCT; 1.65A {Homo sapiens} SCOP: a.60.6.1 a.60.12.1 d.218.1.2 PDB: 1bpx_A* 1bpz_A* 1mq2_A* 1mq3_A* 1bpy_A* 1tva_A* 1zjm_A* 1zjn_A* 1zqa_A* 1zqb_A* 1zqc_A* 1zqd_A* 1zqe_A* 1zqf_A* 1zqg_A* 1zqh_A* 1zqi_A* 1zqj_A* 1zqk_A* 1zql_A* ...
Probab=47.44 E-value=9.4 Score=38.95 Aligned_cols=27 Identities=30% Similarity=0.641 Sum_probs=23.2
Q ss_pred CCCCCccHHHHHHHHHH-cCCHHHHHHH
Q psy1206 142 DSIRGIGPKRAIELIKE-HRSIEKILEN 168 (531)
Q Consensus 142 pGIpGIG~ktA~kLI~~-~~sle~il~~ 168 (531)
-.|||||+|||.+|..+ +.|++++.+.
T Consensus 101 ~~V~GiGpk~a~~l~~~Gi~tledL~~a 128 (335)
T 2fmp_A 101 TRVSGIGPSAARKFVDEGIKTLEDLRKN 128 (335)
T ss_dssp TTSTTCCHHHHHHHHHTTCCSHHHHHTC
T ss_pred hCCCCCCHHHHHHHHHcCCCCHHHHHHh
Confidence 57999999999999986 5699998874
No 74
>3c1y_A DNA integrity scanning protein DISA; DNA damage, DNA repair, DNA-binding, DNA binding protein; HET: DNA 2BA; 2.10A {Thermotoga maritima} PDB: 3c1z_A* 3c21_A* 3c23_A*
Probab=46.55 E-value=7.8 Score=40.44 Aligned_cols=26 Identities=8% Similarity=0.271 Sum_probs=23.8
Q ss_pred CCCCccHHHHHHHHHHcCCHHHHHHH
Q psy1206 143 SIRGIGPKRAIELIKEHRSIEKILEN 168 (531)
Q Consensus 143 GIpGIG~ktA~kLI~~~~sle~il~~ 168 (531)
.||+||++.|-+|+.+|||++++++.
T Consensus 319 ~IPrl~~~iae~Lv~~FGsLq~Il~A 344 (377)
T 3c1y_A 319 TVARIPLSIGYNVVRMFKTLDQISKA 344 (377)
T ss_dssp HTSCCCHHHHHHHHHHHCSHHHHTTC
T ss_pred hCCCCCHHHHHHHHHHhCCHHHHHhC
Confidence 39999999999999999999998764
No 75
>3u5c_S 40S ribosomal protein S18-A, 40S ribosomal protein S17-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_M 3o30_L 3o2z_L 3u5g_S 1s1h_M 3jyv_M* 2zkq_m
Probab=46.31 E-value=15 Score=33.35 Aligned_cols=51 Identities=24% Similarity=0.485 Sum_probs=34.1
Q ss_pred hhhhhhhhccCcccc---------CCCCCchHHHHHHHHhhc-c------------HHHHHHHHhh-CCCCCCC
Q psy1206 231 SFIDLCILLGCDYCD---------SIRGIGPKRAIELIKEHR-S------------IEKILENIDT-KKYTVPE 281 (531)
Q Consensus 231 ~F~~~CiLsGCDY~~---------~i~giG~k~A~kli~k~~-s------------~~~vi~~l~~-~~~~vP~ 281 (531)
.|.+|.-++|.|.-. .|.|||..+|..++++.+ + +++|...+.. ..++||+
T Consensus 10 ~~~~~~RI~g~~i~~~k~v~~ALt~I~GIG~~~A~~I~~~~gid~~~r~g~Lt~~ei~~l~~~i~~~~~~~iP~ 83 (146)
T 3u5c_S 10 SFQHILRLLNTNVDGNIKIVYALTTIKGVGRRYSNLVCKKADVDLHKRAGELTQEELERIVQIMQNPTHYKIPA 83 (146)
T ss_dssp CCCSSBCCTTSCBCSSSCTTTTGGGSTTCCHHHHHHHHHHHTCCTTSCSSSCCHHHHHHHHHHHTCTTTTTCCS
T ss_pred HhhhhhhhcCccCCCCcchHhhHhhhcCCCHHHHHHHHHHcCCCCCceeccCCHHHHHHHHHHHHhhcccCccH
Confidence 366666666666543 588999999999999876 1 3445555543 2467774
No 76
>2ihm_A POL MU, DNA polymerase MU; helix-turn-helix, transferase/DNA complex; HET: DNA D3T; 2.40A {Mus musculus}
Probab=45.81 E-value=11 Score=38.74 Aligned_cols=25 Identities=24% Similarity=0.440 Sum_probs=21.6
Q ss_pred CCCCCccHHHHHHHHHH-cCCHHHHH
Q psy1206 142 DSIRGIGPKRAIELIKE-HRSIEKIL 166 (531)
Q Consensus 142 pGIpGIG~ktA~kLI~~-~~sle~il 166 (531)
-.|||||+|||.+|..+ +.|++++.
T Consensus 105 ~~I~GvG~kta~~l~~~Gi~tledL~ 130 (360)
T 2ihm_A 105 TQVFGVGVKTANRWYQEGLRTLDELR 130 (360)
T ss_dssp HTSTTCCHHHHHHHHHTTCCSHHHHH
T ss_pred hCCCCCCHHHHHHHHHcCCCCHHHHH
Confidence 37999999999999986 46898887
No 77
>3b0x_A DNA polymerase beta family (X family); structural genomics, riken structural genomics/proteomics in RSGI, polxc, PHP, DRP lyase; HET: DNA DGT; 1.36A {Thermus thermophilus} PDB: 3au2_A* 3au6_A* 3auo_A* 3b0y_A*
Probab=43.80 E-value=14 Score=40.29 Aligned_cols=45 Identities=33% Similarity=0.525 Sum_probs=25.0
Q ss_pred cccCCChhhhHhHHhh--hhhh-----hhhccCccccCCCCCchHHHHHHHHhh
Q psy1206 216 SIRGIGPKRAIELLYS--FIDL-----CILLGCDYCDSIRGIGPKRAIELIKEH 262 (531)
Q Consensus 216 sl~~~Gp~~~~el~e~--F~~~-----CiLsGCDY~~~i~giG~k~A~kli~k~ 262 (531)
+..+.||..+..++.. ++.+ ++.+| | +..+||||.|+|.+++..-
T Consensus 97 ~v~GvGpk~A~~~~~~lg~~~~~~l~~a~~~~-~-l~~~~GiG~k~a~~i~~~l 148 (575)
T 3b0x_A 97 EVPGVGPKTARLLYEGLGIDSLEKLKAALDRG-D-LTRLKGFGPKRAERIREGL 148 (575)
T ss_dssp TSTTTCHHHHHHHHHTSCCCSHHHHHHHHHHT-G-GGGSTTCCHHHHHHHHHHH
T ss_pred cCCCcCHHHHHHHHHhcCCCCHHHHHHHHHcC-C-cccCCCCCccHHHHHHHHH
Confidence 3456777776655332 1222 23334 2 5677777777777765443
No 78
>1s5l_U Photosystem II 12 kDa extrinsic protein; photosynthesis, oxygen-evolving, tetra- manganese, membrane; HET: CL1 PHO HEM PL9 LMT BCR; 3.50A {Thermosynechococcus elongatus}
Probab=41.46 E-value=6.1 Score=35.48 Aligned_cols=16 Identities=31% Similarity=0.374 Sum_probs=12.0
Q ss_pred cCCCCCchHHHHHHHH
Q psy1206 245 DSIRGIGPKRAIELIK 260 (531)
Q Consensus 245 ~~i~giG~k~A~kli~ 260 (531)
..+||||+++|-++|.
T Consensus 66 ~~LpGiGp~~A~~II~ 81 (134)
T 1s5l_U 66 IQYRGLYPTLAKLIVK 81 (134)
T ss_dssp GGSTTCTHHHHHHHHH
T ss_pred HHCCCCCHHHHHHHHH
Confidence 3578888888888883
No 79
>2w9m_A Polymerase X; SAXS, DNA repair, DNA polymerase, DNA replication; 2.46A {Deinococcus radiodurans}
Probab=40.29 E-value=29 Score=37.85 Aligned_cols=42 Identities=29% Similarity=0.488 Sum_probs=24.3
Q ss_pred ccccCCChhhhHhHHhh-hhhh-----hhhccCccccCCCCCchHHHHHH
Q psy1206 215 DSIRGIGPKRAIELLYS-FIDL-----CILLGCDYCDSIRGIGPKRAIEL 258 (531)
Q Consensus 215 esl~~~Gp~~~~el~e~-F~~~-----CiLsGCDY~~~i~giG~k~A~kl 258 (531)
.+..+.||..+..+++. |+.+ ++..| -+..+||||.|+|.++
T Consensus 100 ~~v~GVGpk~A~~i~~~G~~s~edL~~a~~~~--~L~~~~GiG~Ktaq~I 147 (578)
T 2w9m_A 100 LGVRGLGPKKIRSLWLAGIDSLERLREAAESG--ELAGLKGFGAKSAATI 147 (578)
T ss_dssp TTSTTCCHHHHHHHHHTTCCSHHHHHHHHHHT--TTTTSTTCCHHHHHHH
T ss_pred hCCCCcCHHHHHHHHHcCCCCHHHHHHHHhhC--ccccCCCCCHHHHHHH
Confidence 34567777777665333 2222 23334 5667777777776665
No 80
>3c1y_A DNA integrity scanning protein DISA; DNA damage, DNA repair, DNA-binding, DNA binding protein; HET: DNA 2BA; 2.10A {Thermotoga maritima} PDB: 3c1z_A* 3c21_A* 3c23_A*
Probab=39.62 E-value=8.4 Score=40.18 Aligned_cols=28 Identities=7% Similarity=0.240 Sum_probs=25.3
Q ss_pred ccCCCCCchHHHHHHHHhhccHHHHHHH
Q psy1206 244 CDSIRGIGPKRAIELIKEHRSIEKILEN 271 (531)
Q Consensus 244 ~~~i~giG~k~A~kli~k~~s~~~vi~~ 271 (531)
+.+||++|++.|-+|+.+|+|+++|+.+
T Consensus 317 Ls~IPrl~~~iae~Lv~~FGsLq~Il~A 344 (377)
T 3c1y_A 317 LKTVARIPLSIGYNVVRMFKTLDQISKA 344 (377)
T ss_dssp HHHTSCCCHHHHHHHHHHHCSHHHHTTC
T ss_pred HhhCCCCCHHHHHHHHHHhCCHHHHHhC
Confidence 3579999999999999999999998865
No 81
>1vq8_Y 50S ribosomal protein L32E; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: c.9.2.1 PDB: 1vq4_Y* 1vq5_Y* 1vq6_Y* 1vq7_Y* 1s72_Y* 1vq9_Y* 1vqk_Y* 1vql_Y* 1vqm_Y* 1vqn_Y* 1vqo_Y* 1vqp_Y* 1yhq_Y* 1yi2_Y* 1yij_Y* 1yit_Y* 1yj9_Y* 1yjn_Y* 1yjw_Y* 2otj_Y* ...
Probab=39.51 E-value=6.2 Score=38.65 Aligned_cols=15 Identities=13% Similarity=0.191 Sum_probs=11.1
Q ss_pred HHHcCCeeEEeecCC
Q psy1206 363 LVEHGLKPIYVFDGK 377 (531)
Q Consensus 363 ll~~gIkPVfVFDG~ 377 (531)
|+..|++.|.|+.-+
T Consensus 178 ~lp~G~~~~~v~n~~ 192 (241)
T 1vq8_Y 178 KHPSGFEEVRVHNVD 192 (241)
T ss_dssp CCTTSCEEEEESSGG
T ss_pred ECCCCCEeeeccCHh
Confidence 467899988887543
No 82
>3arc_U Photosystem II 12 kDa extrinsic protein; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 3bz1_U* 2axt_U* 3bz2_U* 3kzi_U* 3prq_U* 3prr_U* 3a0b_U* 3a0h_U*
Probab=36.72 E-value=8.4 Score=32.58 Aligned_cols=17 Identities=29% Similarity=0.337 Sum_probs=14.2
Q ss_pred ccCCCCCchHHHHHHHH
Q psy1206 244 CDSIRGIGPKRAIELIK 260 (531)
Q Consensus 244 ~~~i~giG~k~A~kli~ 260 (531)
+..+||||+++|-++|.
T Consensus 28 L~~lpGIG~~~A~~IV~ 44 (97)
T 3arc_U 28 FIQYRGLYPTLAKLIVK 44 (97)
T ss_dssp GGGSTTCTTHHHHHHHH
T ss_pred HhHCCCCCHHHHHHHHH
Confidence 45688999999998887
No 83
>3maj_A DNA processing chain A; MCSG, PSI-2, structural genomics, protein structure initiati midwest center for structural genomics; HET: DNA; 2.05A {Rhodopseudomonas palustris}
Probab=36.56 E-value=21 Score=37.18 Aligned_cols=41 Identities=27% Similarity=0.395 Sum_probs=32.6
Q ss_pred CCCHHHHHHHHhHcCCCCCCCCCCccHHHHHHHHHHcCCHHHHHHHh
Q psy1206 123 ELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENI 169 (531)
Q Consensus 123 glt~eqfid~~iL~G~DY~pGIpGIG~ktA~kLI~~~~sle~il~~l 169 (531)
.++.+.......|. .+||||++++.+|+..|+|.+++++.+
T Consensus 16 ~m~~~e~~~wL~L~------~~~gvG~~~~~~Ll~~fgs~~~~~~a~ 56 (382)
T 3maj_A 16 VLTEAQRIDWMRLI------RAENVGPRTFRSLINHFGSARAALERL 56 (382)
T ss_dssp CSCHHHHHHHHHHH------TSTTCCHHHHHHHHHHHSSHHHHHHHH
T ss_pred CCCHHHHHHHHHHH------cCCCCCHHHHHHHHHHcCCHHHHHHcC
Confidence 36666666666663 578999999999999999999888764
No 84
>2f23_A Anti-cleavage anti-GREA transcription factor GFH1; anti-GREA GFH1 thermus thermophilus; 1.60A {Thermus thermophilus} SCOP: a.2.1.1 d.26.1.2 PDB: 2eul_A 3aoh_X* 3aoi_X* 2etn_A
Probab=35.62 E-value=50 Score=29.75 Aligned_cols=56 Identities=23% Similarity=0.217 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHcccccCCCCChhHHHHHHhhccccchHHHHHHHHHHHHH
Q psy1206 384 GELNKRMEKREDAQKALAKAQEQGKLKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKA 444 (531)
Q Consensus 384 ~~~~kR~~~r~~a~~~~~~a~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ 444 (531)
.+++.++..|.++.+..++|.+.||++ ++.-+..++.+-.+++.+|..=-++|-.+
T Consensus 17 ~el~~~~~~r~~~~~~i~~A~~~GDls-----Enaey~aak~~q~~~e~ri~~L~~~L~~a 72 (156)
T 2f23_A 17 QQLERERERLQEATKILQELMESSDDY-----DDSGLEAAKQEKARIEARIDSLEDILSRA 72 (156)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCSCCS-----CSHHHHHHHHHHHHHHHHHHHHHHHHHHE
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCch-----hhhhHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 456667778999999999999999986 23445555554555666665544444443
No 85
>3vdp_A Recombination protein RECR; zinc finger, DNA repair, DNA binding; 2.45A {Thermoanaerobacter tengcongensis} PDB: 3vdu_A 3ve5_D
Probab=35.31 E-value=15 Score=35.42 Aligned_cols=17 Identities=41% Similarity=0.534 Sum_probs=14.7
Q ss_pred CCCCCccHHHHHHHHHH
Q psy1206 142 DSIRGIGPKRAIELIKE 158 (531)
Q Consensus 142 pGIpGIG~ktA~kLI~~ 158 (531)
..+||||+|+|.++.-.
T Consensus 29 ~~LPGIG~KsA~RlA~h 45 (212)
T 3vdp_A 29 SKLPGIGPKTAQRLAFF 45 (212)
T ss_dssp HTSTTCCHHHHHHHHHH
T ss_pred HHCCCCCHHHHHHHHHH
Confidence 46899999999999865
No 86
>2csb_A Topoisomerase V, TOP61; topoisomerase IB, helix-turn-helix, helix-H helix, HHH motif, three helix bundle, methanopyrus kandleri isomerase; 2.30A {Methanopyrus kandleri} SCOP: a.60.2.4 a.60.2.4 a.60.2.4 a.60.2.4 a.267.1.1 PDB: 2csd_A
Probab=32.08 E-value=46 Score=33.30 Aligned_cols=57 Identities=25% Similarity=0.372 Sum_probs=45.5
Q ss_pred ccCCChhhhHhHHhhhhhhhhhccCcc---------------------------ccCCCCCchHHHHHHHHhhccHHHHH
Q psy1206 217 IRGIGPKRAIELLYSFIDLCILLGCDY---------------------------CDSIRGIGPKRAIELIKEHRSIEKIL 269 (531)
Q Consensus 217 l~~~Gp~~~~el~e~F~~~CiLsGCDY---------------------------~~~i~giG~k~A~kli~k~~s~~~vi 269 (531)
..+++|-.++++.+.|-.+.....+|. +....|+|-|||-+|++-++++++|-
T Consensus 359 ehglspdaadeliehfesiagilatdleeiermyeegrlseeayraaveiqlaeltkkegvgrktaerllrafgnpervk 438 (519)
T 2csb_A 359 EHGLSPDAADELIEHFESIAGILATDLEEIERMYEEGRLSEEAYRAAVEIQLAELTKKEGVGRKTAERLLRAFGNPERVK 438 (519)
T ss_dssp HHCCCHHHHHHHHHHHSSHHHHHTSCHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHTSTTCCHHHHHHHHHHHSSHHHHH
T ss_pred hcCCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHcccccHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHhCCHHHHH
Confidence 457889999999999988876655553 22467999999999999999999886
Q ss_pred HHHh
Q psy1206 270 ENID 273 (531)
Q Consensus 270 ~~l~ 273 (531)
+..+
T Consensus 439 qlar 442 (519)
T 2csb_A 439 QLAR 442 (519)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6554
No 87
>1vdd_A Recombination protein RECR; helix-hairpin-helix, zinc finger, toprim, walker B ATP binding motif; 2.50A {Deinococcus radiodurans} SCOP: e.49.1.1 PDB: 2v1c_A
Probab=30.39 E-value=20 Score=34.88 Aligned_cols=17 Identities=41% Similarity=0.612 Sum_probs=14.7
Q ss_pred CCCCCccHHHHHHHHHH
Q psy1206 142 DSIRGIGPKRAIELIKE 158 (531)
Q Consensus 142 pGIpGIG~ktA~kLI~~ 158 (531)
..+||||+|+|.++.-.
T Consensus 15 ~~LPGIG~KSA~RlA~h 31 (228)
T 1vdd_A 15 SRLPGIGPKSAQRLAFH 31 (228)
T ss_dssp HTSTTCCHHHHHHHHHH
T ss_pred hHCCCCCHHHHHHHHHH
Confidence 46899999999999865
No 88
>3maj_A DNA processing chain A; MCSG, PSI-2, structural genomics, protein structure initiati midwest center for structural genomics; HET: DNA; 2.05A {Rhodopseudomonas palustris}
Probab=29.08 E-value=30 Score=36.06 Aligned_cols=29 Identities=24% Similarity=0.337 Sum_probs=25.7
Q ss_pred ccCCCCCchHHHHHHHHhhccHHHHHHHH
Q psy1206 244 CDSIRGIGPKRAIELIKEHRSIEKILENI 272 (531)
Q Consensus 244 ~~~i~giG~k~A~kli~k~~s~~~vi~~l 272 (531)
+..+||+|++++.+|+..+++++.++..+
T Consensus 28 L~~~~gvG~~~~~~Ll~~fgs~~~~~~a~ 56 (382)
T 3maj_A 28 LIRAENVGPRTFRSLINHFGSARAALERL 56 (382)
T ss_dssp HHTSTTCCHHHHHHHHHHHSSHHHHHHHH
T ss_pred HHcCCCCCHHHHHHHHHHcCCHHHHHHcC
Confidence 35789999999999999999999888765
No 89
>3vdp_A Recombination protein RECR; zinc finger, DNA repair, DNA binding; 2.45A {Thermoanaerobacter tengcongensis} PDB: 3vdu_A 3ve5_D
Probab=28.89 E-value=18 Score=34.77 Aligned_cols=17 Identities=41% Similarity=0.581 Sum_probs=13.9
Q ss_pred ccCCCCCchHHHHHHHH
Q psy1206 244 CDSIRGIGPKRAIELIK 260 (531)
Q Consensus 244 ~~~i~giG~k~A~kli~ 260 (531)
+..+||||+|+|.++.-
T Consensus 28 l~~LPGIG~KsA~RlA~ 44 (212)
T 3vdp_A 28 LSKLPGIGPKTAQRLAF 44 (212)
T ss_dssp HHTSTTCCHHHHHHHHH
T ss_pred HHHCCCCCHHHHHHHHH
Confidence 45789999999988753
No 90
>2bcq_A DNA polymerase lambda; misalignment, extrahelical, mutagenesis, mutation, deletion, streisinger, slippage, transferase, lyase/DNA complex; HET: DNA; 1.65A {Homo sapiens} SCOP: a.60.6.1 a.60.12.1 d.218.1.2 PDB: 1xsl_A* 2bcr_A* 2bcs_A* 2bcu_A* 2bcv_A* 2gws_A* 3c5g_A* 3c5f_A* 2pfn_A* 1xsp_A* 1xsn_A* 2pfo_A* 2pfp_A* 2pfq_A* 3hw8_A* 3hwt_A* 1rzt_A* 3hx0_A* 3mdc_A* 3mda_A* ...
Probab=25.07 E-value=42 Score=34.08 Aligned_cols=28 Identities=32% Similarity=0.420 Sum_probs=21.4
Q ss_pred cCCCCCchHHHHHHHHh-hccHHHHHHHH
Q psy1206 245 DSIRGIGPKRAIELIKE-HRSIEKILENI 272 (531)
Q Consensus 245 ~~i~giG~k~A~kli~k-~~s~~~vi~~l 272 (531)
.+|+|||+|||.++..+ .+|++.+.++.
T Consensus 99 ~~v~GiG~k~a~~l~~~Gi~tledL~~a~ 127 (335)
T 2bcq_A 99 SNIWGAGTKTAQMWYQQGFRSLEDIRSQA 127 (335)
T ss_dssp HTSTTCCHHHHHHHHHTTCCSHHHHHHHC
T ss_pred hcCCCcCHHHHHHHHHcCCCCHHHHHHHh
Confidence 47999999999999876 33677666543
No 91
>2zix_A Crossover junction endonuclease MUS81; helix-hairpin-helix, DNA damage, DNA recombination, DNA repair, hydrolase, magnesium, metal-binding, nucleus; 3.50A {Homo sapiens}
Probab=25.02 E-value=12 Score=37.38 Aligned_cols=67 Identities=21% Similarity=0.283 Sum_probs=46.2
Q ss_pred ccCCCCCchHHHHHHHHhhccHHHHHHHHhhCCCCCCCcchHHHHHHHhcCCcccCccccccccccCCCcccccceeeec
Q psy1206 244 CDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGWLYKEARELFRHPEIADPETIELVADVAPSSIRESRKICID 323 (531)
Q Consensus 244 ~~~i~giG~k~A~kli~k~~s~~~vi~~l~~~~~~vP~~y~~~~A~~~F~~~~V~dP~~~~Lv~~~aP~~i~~gk~iAID 323 (531)
|-.|||||+++|..++.+|+|+..++++.+...- |+ ....++++.... ...|+|.-.
T Consensus 235 L~~I~GVs~~~A~~I~~~ypTp~~L~~Ay~~~~~--~~-------------------e~~~lL~~l~~g--~~~r~IG~~ 291 (307)
T 2zix_A 235 LMQVRGVSGEKAAALVDRYSTPASLLAAYDACAT--PK-------------------EQETLLSTIKCG--RLQRNLGPA 291 (307)
T ss_dssp TTCSTTCCSTTTTTSSSSSCSHHHHHHHHHCCSS--GG-------------------GTTTTTSCCCCT--TTTCCCCHH
T ss_pred HHhccCCCHHHHHHHHHHcCCHHHHHHHHHhcCC--HH-------------------HHHHHHHhcccC--CCCCccCHH
Confidence 6789999999999999999999998888864210 10 112334332211 135778888
Q ss_pred ccchHHHHHH
Q psy1206 324 ASMSLYQFLI 333 (531)
Q Consensus 324 a~~~lyqfl~ 333 (531)
.|-.||.|+.
T Consensus 292 lSrkI~~~f~ 301 (307)
T 2zix_A 292 LSRTLSQLYC 301 (307)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHHc
Confidence 8888998874
No 92
>2edu_A Kinesin-like protein KIF22; kinesin-like DNA binding domain, helix turn helix motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.60.2.7
Probab=24.73 E-value=33 Score=28.30 Aligned_cols=18 Identities=33% Similarity=0.521 Sum_probs=15.4
Q ss_pred CCCCCccHHHHHHHHHHc
Q psy1206 142 DSIRGIGPKRAIELIKEH 159 (531)
Q Consensus 142 pGIpGIG~ktA~kLI~~~ 159 (531)
..|||||+++|.+|+..+
T Consensus 43 ~~ipGIG~~~A~~Il~~r 60 (98)
T 2edu_A 43 RSLQRIGPKKAQLIVGWR 60 (98)
T ss_dssp HHSTTCCHHHHHHHHHHH
T ss_pred HHCCCCCHHHHHHHHHHH
Confidence 468999999999998764
No 93
>2zix_A Crossover junction endonuclease MUS81; helix-hairpin-helix, DNA damage, DNA recombination, DNA repair, hydrolase, magnesium, metal-binding, nucleus; 3.50A {Homo sapiens}
Probab=24.72 E-value=8.8 Score=38.41 Aligned_cols=32 Identities=19% Similarity=0.329 Sum_probs=28.2
Q ss_pred CCCCCCCccHHHHHHHHHHcCCHHHHHHHhhh
Q psy1206 140 YCDSIRGIGPKRAIELIKEHRSIEKILENIDT 171 (531)
Q Consensus 140 Y~pGIpGIG~ktA~kLI~~~~sle~il~~l~~ 171 (531)
-+-.|||||+++|..++..|+|+..+++..+.
T Consensus 234 ~L~~I~GVs~~~A~~I~~~ypTp~~L~~Ay~~ 265 (307)
T 2zix_A 234 QLMQVRGVSGEKAAALVDRYSTPASLLAAYDA 265 (307)
T ss_dssp TTTCSTTCCSTTTTTSSSSSCSHHHHHHHHHC
T ss_pred HHHhccCCCHHHHHHHHHHcCCHHHHHHHHHh
Confidence 34579999999999999999999999988754
No 94
>2i5h_A Hypothetical protein AF1531; PFAM:DUF655, PSI-2, structural genomics, protein structure initiative; 1.74A {Archaeoglobus fulgidus} SCOP: e.71.1.1
Probab=24.29 E-value=31 Score=32.97 Aligned_cols=29 Identities=28% Similarity=0.493 Sum_probs=21.1
Q ss_pred ccCCCCCchHHHHHHHHh-----hccHHHHHHHH
Q psy1206 244 CDSIRGIGPKRAIELIKE-----HRSIEKILENI 272 (531)
Q Consensus 244 ~~~i~giG~k~A~kli~k-----~~s~~~vi~~l 272 (531)
|..+||||+++|.++|.- |.|++.+.+.+
T Consensus 134 L~~LpGIG~k~A~~IIeyRe~G~F~s~eDL~~RV 167 (205)
T 2i5h_A 134 LELLPGVGKKMMWAIIEERKKRPFESFEDIAQRV 167 (205)
T ss_dssp GGGSTTCCHHHHHHHHHHHHHSCCCSHHHHHHHS
T ss_pred HhcCCCcCHHHHHHHHHHHhcCCCCCHHHHHHhc
Confidence 457999999999999943 55666654433
No 95
>3pie_A 5'->3' exoribonuclease (XRN1); beta berrel, tudor domain, chromo domain, mRNA turnover, RRN processing, RNA binding, DNA binding; 2.90A {Kluyveromyces lactis} PDB: 3pif_A
Probab=24.09 E-value=71 Score=37.88 Aligned_cols=84 Identities=25% Similarity=0.358 Sum_probs=48.4
Q ss_pred eeecccchHHHHHHHHhhcCccccCCCCCCcchhhhHHHHHHHHHHcCCee----EEeecCCCCCcchHHHHHHHHH-HH
Q psy1206 320 ICIDASMSLYQFLIAVRSEGNQLMSVDGEPTSHLMGTFYRTIRLVEHGLKP----IYVFDGKPPTLKSGELNKRMEK-RE 394 (531)
Q Consensus 320 iAIDa~~~lyqfl~~ir~~g~~l~~~~g~~tshl~g~~~R~~~ll~~gIkP----VfVFDG~pp~lK~~~~~kR~~~-r~ 394 (531)
+=||....||..... ++.+.. .-.+...+.--.+..+.-|.+-|+| +..+||.+|-.|-.....||-+ ..
T Consensus 32 LYlDmNgIIH~c~h~---~~~~~~--~~~te~e~~~~if~yid~l~~~vrPrkllyiAiDGVAPrAKmnqQR~RRfrsa~ 106 (1155)
T 3pie_A 32 LYLDMNSILHNCTHG---DGSEVN--SRLSEEEVYSKIFSYIDHLFHTIKPKQTFYMAIDGVAPRAKMNQQRARRFRTAM 106 (1155)
T ss_pred EEEecccceeeeecC---CCCccc--cCCCHHHHHHHHHHHHHHHHHhcCcceEEEEEecCCCChhHHHHHHHHHHHhhh
Confidence 557777777765431 111110 0011122222223333334455888 6789999999999887777765 34
Q ss_pred HHHHHHHHHHHccc
Q psy1206 395 DAQKALAKAQEQGK 408 (531)
Q Consensus 395 ~a~~~~~~a~~~G~ 408 (531)
++++..+++.+.|+
T Consensus 107 ~~~~~~~~~~~~g~ 120 (1155)
T 3pie_A 107 DAEKALQKAIENGD 120 (1155)
T ss_pred hhhHHHHHHHhcCC
Confidence 56666677888775
No 96
>1vdd_A Recombination protein RECR; helix-hairpin-helix, zinc finger, toprim, walker B ATP binding motif; 2.50A {Deinococcus radiodurans} SCOP: e.49.1.1 PDB: 2v1c_A
Probab=23.87 E-value=26 Score=34.11 Aligned_cols=17 Identities=41% Similarity=0.575 Sum_probs=14.0
Q ss_pred ccCCCCCchHHHHHHHH
Q psy1206 244 CDSIRGIGPKRAIELIK 260 (531)
Q Consensus 244 ~~~i~giG~k~A~kli~ 260 (531)
+..+||||+|+|.++.-
T Consensus 14 l~~LPGIG~KSA~RlA~ 30 (228)
T 1vdd_A 14 LSRLPGIGPKSAQRLAF 30 (228)
T ss_dssp HHTSTTCCHHHHHHHHH
T ss_pred HhHCCCCCHHHHHHHHH
Confidence 45789999999988754
No 97
>1qfq_B N36, 36-MER N-terminal peptide of the N protein; bacteriophage lambda, antitermination, peptide-RNA-complex; NMR {Enterobacteria phage lambda} SCOP: j.9.5.1
Probab=23.85 E-value=44 Score=22.51 Aligned_cols=19 Identities=26% Similarity=0.380 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q psy1206 386 LNKRMEKREDAQKALAKAQ 404 (531)
Q Consensus 386 ~~kR~~~r~~a~~~~~~a~ 404 (531)
..+||++|.+.+.+|+.|-
T Consensus 3 q~rrrerra~kqa~wkaan 21 (35)
T 1qfq_B 3 QTRRRERRAEKQAQWKAAN 21 (35)
T ss_dssp HHHHHHHTHHHHHHHHHTC
T ss_pred hhHHHHHHHHHHhhhhccC
Confidence 4689999999999998763
No 98
>2y35_A LD22664P; hydrolase-DNA complex, RNA degradation, exonuclease 5'-3', R interference; 3.20A {Drosophila melanogaster}
Probab=23.10 E-value=58 Score=38.62 Aligned_cols=86 Identities=17% Similarity=0.249 Sum_probs=46.4
Q ss_pred ceeeecccchHHHHHHHHhhcCccccCCCCCCc-chhhhHHHHHHHHHHcCCee----EEeecCCCCCcchHHHHHHHHH
Q psy1206 318 RKICIDASMSLYQFLIAVRSEGNQLMSVDGEPT-SHLMGTFYRTIRLVEHGLKP----IYVFDGKPPTLKSGELNKRMEK 392 (531)
Q Consensus 318 k~iAIDa~~~lyqfl~~ir~~g~~l~~~~g~~t-shl~g~~~R~~~ll~~gIkP----VfVFDG~pp~lK~~~~~kR~~~ 392 (531)
--+.||....||.....- ++.+.. ..| ..+..-.+..+.-|.+=||| ++-+||.+|-.|......||-+
T Consensus 30 DnLYlDmNgIIH~c~h~~--~~~~~~----~~~e~e~~~~if~yid~l~~~vrPrkll~iAiDGvAPrAKmnqQR~RRfr 103 (1140)
T 2y35_A 30 DNLYLDMNGIVHNCSHPD--DNNIHF----HLEEEQIFQEIFNYVDKLFYLIKPQRLFFLSVDGVAPRAKMNQQRSRRFR 103 (1140)
T ss_dssp SEEEEEHHHHHHHHHCC--------C----CCCHHHHHHHHHHHHHHHHHHHCCSSEEEEECCCSCCHHHHHHHHHHHHH
T ss_pred CeEEEecchhhhhhcCCC--CCCCCC----CCCHHHHHHHHHHHHHHHHheeccceeEEEEecCCCchhHHHHHHHHHhh
Confidence 358899999999765421 111100 011 12222222233333344665 7889999999999888777765
Q ss_pred HH-HHHHHHHHHHHcccc
Q psy1206 393 RE-DAQKALAKAQEQGKL 409 (531)
Q Consensus 393 r~-~a~~~~~~a~~~G~~ 409 (531)
.. +++...++|...|..
T Consensus 104 sa~~~~~~~~~~~~~g~~ 121 (1140)
T 2y35_A 104 TAREAEQQEAKAAQRGEL 121 (1140)
T ss_dssp HHHHHHHHHHHHHHC---
T ss_pred hhhhhhhhHHHHhhcCCc
Confidence 43 444445566666653
No 99
>2p4v_A Transcription elongation factor GREB; transcript cleavage, GRE-factors, RNA polymerase; 2.60A {Escherichia coli}
Probab=22.72 E-value=1.1e+02 Score=27.74 Aligned_cols=54 Identities=24% Similarity=0.191 Sum_probs=35.2
Q ss_pred HHHHHH-HHHHHHHHHHHHHHHHcccccCCCCChhHHHHHHhhccccchHHHHHHHHHHH
Q psy1206 384 GELNKR-MEKREDAQKALAKAQEQGKLKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLL 442 (531)
Q Consensus 384 ~~~~kR-~~~r~~a~~~~~~a~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll 442 (531)
.+++.. +..|.+..+..++|.+.||+. |..-+.+++++-.+++.+|..=-++|-
T Consensus 16 ~EL~~L~~~~R~~i~~~i~~Ar~~GDls-----ENaeY~aak~~q~~~e~rI~~L~~~L~ 70 (158)
T 2p4v_A 16 QELNYLWREERPEVTKKVTWAASLGDRS-----ENADYQYNKKRLREIDRRVRYLTKCME 70 (158)
T ss_dssp HHHHHHHHTHHHHHHHHHHHHHHHSCTT-----TCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcchHHHHHHHHHHHhCCCcc-----cchhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 455555 447888889999999999987 334455555545556666655444443
No 100
>2fmp_A DNA polymerase beta; nucleotidyl transferase, transferase/DNA complex; HET: DNA DOC DCT; 1.65A {Homo sapiens} SCOP: a.60.6.1 a.60.12.1 d.218.1.2 PDB: 1bpx_A* 1bpz_A* 1mq2_A* 1mq3_A* 1bpy_A* 1tva_A* 1zjm_A* 1zjn_A* 1zqa_A* 1zqb_A* 1zqc_A* 1zqd_A* 1zqe_A* 1zqf_A* 1zqg_A* 1zqh_A* 1zqi_A* 1zqj_A* 1zqk_A* 1zql_A* ...
Probab=22.58 E-value=35 Score=34.66 Aligned_cols=27 Identities=26% Similarity=0.576 Sum_probs=20.6
Q ss_pred ccCCCCCchHHHHHHHHh-hccHHHHHH
Q psy1206 244 CDSIRGIGPKRAIELIKE-HRSIEKILE 270 (531)
Q Consensus 244 ~~~i~giG~k~A~kli~k-~~s~~~vi~ 270 (531)
+-+|+|||+|||.++..+ .+|++.+..
T Consensus 100 l~~V~GiGpk~a~~l~~~Gi~tledL~~ 127 (335)
T 2fmp_A 100 LTRVSGIGPSAARKFVDEGIKTLEDLRK 127 (335)
T ss_dssp HTTSTTCCHHHHHHHHHTTCCSHHHHHT
T ss_pred HhCCCCCCHHHHHHHHHcCCCCHHHHHH
Confidence 458999999999999877 226666554
No 101
>3j20_O 30S ribosomal protein S13P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=22.46 E-value=25 Score=32.01 Aligned_cols=34 Identities=24% Similarity=0.317 Sum_probs=27.5
Q ss_pred hhhhhhhhhccCccccC---------CCCCchHHHHHHHHhhc
Q psy1206 230 YSFIDLCILLGCDYCDS---------IRGIGPKRAIELIKEHR 263 (531)
Q Consensus 230 e~F~~~CiLsGCDY~~~---------i~giG~k~A~kli~k~~ 263 (531)
+.|.+|.-++|.|.-.+ |.|||..+|..++++.+
T Consensus 2 ~~~~~m~RI~g~~i~~~k~v~~aLt~I~GIG~~~A~~I~~~~g 44 (148)
T 3j20_O 2 ANFRHIVRVAGVDLDGNKQLRWALTAIKGIGINFATMVCRVAG 44 (148)
T ss_dssp CCBCSCEECSSSCEECSSCHHHHHHHSTTCCHHHHHHHHHHHT
T ss_pred hhhhHhHHHcCccCCCCCEehhhhhhccCcCHHHHHHHHHHhC
Confidence 45778888888776653 88999999999998866
No 102
>1jms_A Terminal deoxynucleotidyltransferase; polymerase; 2.36A {Mus musculus} SCOP: a.60.6.1 a.60.12.1 d.218.1.2 PDB: 1kdh_A* 1kej_A*
Probab=22.43 E-value=48 Score=34.34 Aligned_cols=26 Identities=31% Similarity=0.461 Sum_probs=19.5
Q ss_pred cCCCCCchHHHHHHHHh-hccHHHHHH
Q psy1206 245 DSIRGIGPKRAIELIKE-HRSIEKILE 270 (531)
Q Consensus 245 ~~i~giG~k~A~kli~k-~~s~~~vi~ 270 (531)
-+|+|||+|||.++..+ .+|++.+..
T Consensus 124 ~~I~GvGpk~a~~ly~~Gi~tledL~~ 150 (381)
T 1jms_A 124 TSVFGVGLKTAEKWFRMGFRTLSKIQS 150 (381)
T ss_dssp HTSTTCCHHHHHHHHHTTCCSHHHHHH
T ss_pred HccCCCCHHHHHHHHHcCCCcHHHHHh
Confidence 47999999999999877 225655553
No 103
>2edu_A Kinesin-like protein KIF22; kinesin-like DNA binding domain, helix turn helix motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.60.2.7
Probab=22.35 E-value=82 Score=25.81 Aligned_cols=15 Identities=20% Similarity=0.450 Sum_probs=7.2
Q ss_pred cCCCCCchHHHHHHH
Q psy1206 245 DSIRGIGPKRAIELI 259 (531)
Q Consensus 245 ~~i~giG~k~A~kli 259 (531)
..++|||+++|-+++
T Consensus 73 ~~v~Gig~k~~~~l~ 87 (98)
T 2edu_A 73 ERVEGITGKQMESFL 87 (98)
T ss_dssp GGSTTCCHHHHHHHH
T ss_pred HhCCCCCHHHHHHHH
Confidence 344555555544443
No 104
>2xzm_M RPS18E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_M
Probab=21.75 E-value=30 Score=31.66 Aligned_cols=33 Identities=27% Similarity=0.350 Sum_probs=26.1
Q ss_pred hhhhhhhhccCcccc---------CCCCCchHHHHHHHHhhc
Q psy1206 231 SFIDLCILLGCDYCD---------SIRGIGPKRAIELIKEHR 263 (531)
Q Consensus 231 ~F~~~CiLsGCDY~~---------~i~giG~k~A~kli~k~~ 263 (531)
.|.+|.-++|.|--. .|.|||..+|..++.+.+
T Consensus 10 ~f~~m~RI~g~~l~~~k~v~~aLt~I~GIG~~~A~~I~~~~g 51 (155)
T 2xzm_M 10 DFKYIHRILNTNIDGKRITPIALTGIRGIGRRFAYIICKVLK 51 (155)
T ss_dssp SSCSCCEETTTEECCSSCHHHHHTTSTTCCHHHHHHHHHHTT
T ss_pred hhhhhHheeCccCCCCCEEEEeeecccccCHHHHHHHHHHcC
Confidence 577777777776543 599999999999999865
No 105
>3sgi_A DNA ligase; HET: DNA AMP; 3.50A {Mycobacterium tuberculosis}
Probab=21.23 E-value=20 Score=39.69 Aligned_cols=26 Identities=38% Similarity=0.538 Sum_probs=0.0
Q ss_pred CCCCCchHHHHHHHHhhccHHHHHHH
Q psy1206 246 SIRGIGPKRAIELIKEHRSIEKILEN 271 (531)
Q Consensus 246 ~i~giG~k~A~kli~k~~s~~~vi~~ 271 (531)
+|||||+++|..|.+.|+|++++..+
T Consensus 533 GIp~VG~~~ak~La~~Fgsle~L~~A 558 (615)
T 3sgi_A 533 SIRHVGPTAARALATEFGSLDAIAAA 558 (615)
T ss_dssp --------------------------
T ss_pred CCCCCCHHHHHHHHHHcCCHHHHHhC
Confidence 69999999999999999999887654
No 106
>2ihm_A POL MU, DNA polymerase MU; helix-turn-helix, transferase/DNA complex; HET: DNA D3T; 2.40A {Mus musculus}
Probab=21.21 E-value=50 Score=33.87 Aligned_cols=26 Identities=23% Similarity=0.413 Sum_probs=19.6
Q ss_pred ccCCCCCchHHHHHHHHh-hccHHHHH
Q psy1206 244 CDSIRGIGPKRAIELIKE-HRSIEKIL 269 (531)
Q Consensus 244 ~~~i~giG~k~A~kli~k-~~s~~~vi 269 (531)
+-+|+|||+|||.++..+ .+|++.+.
T Consensus 104 l~~I~GvG~kta~~l~~~Gi~tledL~ 130 (360)
T 2ihm_A 104 FTQVFGVGVKTANRWYQEGLRTLDELR 130 (360)
T ss_dssp HHTSTTCCHHHHHHHHHTTCCSHHHHH
T ss_pred HhCCCCCCHHHHHHHHHcCCCCHHHHH
Confidence 347999999999999877 22565544
No 107
>3fhg_A Mjogg, N-glycosylase/DNA lyase, DNA-(apurinic; helix-hairpin-helix, 8-oxoguanine, 8-OXOG, DNA damage, DNA repair, glycosidase, hydrolase; 1.90A {Sulfolobus solfataricus}
Probab=20.83 E-value=42 Score=31.53 Aligned_cols=17 Identities=29% Similarity=0.583 Sum_probs=14.3
Q ss_pred CCCCCccHHHHHHHHHH
Q psy1206 142 DSIRGIGPKRAIELIKE 158 (531)
Q Consensus 142 pGIpGIG~ktA~kLI~~ 158 (531)
-.+||||++||--++.-
T Consensus 120 ~~lpGIG~kTA~~il~~ 136 (207)
T 3fhg_A 120 LNIKGIGMQEASHFLRN 136 (207)
T ss_dssp TTSTTCCHHHHHHHHHH
T ss_pred HcCCCcCHHHHHHHHHH
Confidence 38999999999887764
No 108
>2ziu_B Crossover junction endonuclease EME1; helix-hairpin-helix, alternative splicing, DNA damage, DNA recombination, DNA repair, hydrolase, magnesium; 2.70A {Homo sapiens} PDB: 2ziw_B 2zix_B 2ziv_B
Probab=20.69 E-value=83 Score=31.98 Aligned_cols=39 Identities=8% Similarity=0.109 Sum_probs=0.0
Q ss_pred HHhhhhhhhhhccCccccCCCCCchHHHHHHHHhhccHHHHHHHHhh
Q psy1206 228 LLYSFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDT 274 (531)
Q Consensus 228 l~e~F~~~CiLsGCDY~~~i~giG~k~A~kli~k~~s~~~vi~~l~~ 274 (531)
+.|-|+.| |-.||||++.+|..++++|+|+..++++.+.
T Consensus 249 ~~d~w~~~--------L~qi~gVS~ekA~aI~~~YPTp~~L~~Ay~~ 287 (341)
T 2ziu_B 249 LALVWRRQ--------IQQLNRVSLEMASAVVNAYPSPQLLVQAYQQ 287 (341)
T ss_dssp HHHHHHHH--------HTTSTTCCHHHHHHHHHHSCSHHHHHHHHHT
T ss_pred HHHHHHHH--------HHHccCCCHHHHHHHHHHCCCHHHHHHHHHh
Done!