Your job contains 1 sequence.
>psy1206
MTLKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSSTTQGRLDSFFTIRREEKRK
APCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVLE
GMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGW
LYKEARELFRHPEVADPETIEFIDLCILLGCDYCDSIRGIGPKRAIELLYSFIDLCILLG
CDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGWLYKEARELFRHPEIADP
ETIELVADVAPSSIRESRKICIDASMSLYQFLIAVRSEGNQLMSVDGEPTSHLMGTFYRT
IRLVEHGLKPIYVFDGKPPTLKSGELNKRMEKREDAQKALAKAQEQGKLKWSDPDEDGLV
KYLCGDKNFAEDRIRNGAKKLLKARSTTTQGRLDSFFTIRREEKRKSRCQYQCQYQCQYQ
CQYQCQCQCQCQCQCQCQCQYQYQYQYQYQYQYQYQYQCQCQCQCQCQYQY
The BLAST search returned 3 gene products which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= psy1206
(531 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
ZFIN|ZDB-GENE-031112-11 - symbol:fen1 "flap structure-spe... 559 2.5e-73 2
FB|FBgn0025832 - symbol:Fen1 "Flap endonuclease 1" specie... 556 6.0e-72 2
UNIPROTKB|P70054 - symbol:fen1-b "Flap endonuclease 1-B" ... 545 1.6e-71 2
UNIPROTKB|P70040 - symbol:fen1-a "Flap endonuclease 1-A" ... 543 5.3e-71 2
UNIPROTKB|Q5ZLN4 - symbol:FEN1 "Flap endonuclease 1" spec... 543 6.8e-69 2
RGD|621821 - symbol:Fen1 "flap structure-specific endonuc... 535 1.1e-68 2
UNIPROTKB|J9PB88 - symbol:FEN1 "Flap endonuclease 1" spec... 535 1.8e-68 2
UNIPROTKB|P39748 - symbol:FEN1 "Flap endonuclease 1" spec... 532 2.3e-68 2
UNIPROTKB|Q58DH8 - symbol:FEN1 "Flap endonuclease 1" spec... 531 6.0e-68 2
UNIPROTKB|F1RKS3 - symbol:FEN1 "Flap endonuclease 1" spec... 531 6.0e-68 2
MGI|MGI:102779 - symbol:Fen1 "flap structure specific end... 521 2.6e-67 2
WB|WBGene00000794 - symbol:crn-1 species:6239 "Caenorhabd... 517 2.3e-64 2
POMBASE|SPAC3G6.06c - symbol:rad2 "FEN-1 endonuclease Rad... 457 9.9e-58 2
DICTYBASE|DDB_G0284987 - symbol:repG "XPG" species:44689 ... 474 2.9e-56 2
CGD|CAL0000208 - symbol:orf19.547 species:5476 "Candida a... 430 3.3e-55 2
UNIPROTKB|A4QS18 - symbol:FEN1 "Flap endonuclease 1" spec... 431 6.1e-54 2
SGD|S000001596 - symbol:RAD27 "5' to 3' exonuclease" spec... 427 1.3e-53 2
TAIR|locus:2146824 - symbol:AT5G26680 species:3702 "Arabi... 436 4.2e-53 2
UNIPROTKB|I3L3E9 - symbol:FEN1 "Flap endonuclease 1" spec... 368 6.8e-51 2
ZFIN|ZDB-GENE-050417-81 - symbol:zgc:110269 "zgc:110269" ... 386 1.8e-46 2
GENEDB_PFALCIPARUM|PFD0420c - symbol:PFD0420c "flap exonu... 364 1.5e-43 2
UNIPROTKB|Q7K734 - symbol:FEN1 "Flap endonuclease 1" spec... 364 1.5e-43 2
ASPGD|ASPL0000038590 - symbol:AN2764 species:162425 "Emer... 431 1.6e-40 1
UNIPROTKB|F5H1Y3 - symbol:FEN1 "Flap endonuclease 1" spec... 348 9.8e-32 1
TAIR|locus:2013633 - symbol:AT1G29630 species:3702 "Arabi... 202 7.8e-13 1
GENEDB_PFALCIPARUM|PF10_0080 - symbol:PF10_0080 "endonucl... 191 3.4e-12 1
UNIPROTKB|Q8IJW1 - symbol:PF10_0080 "Endonuclease, putati... 191 3.4e-12 1
GENEDB_PFALCIPARUM|PFB0265c - symbol:PFB0265c "DNA repair... 170 8.8e-12 2
UNIPROTKB|O96154 - symbol:PFB0265c "DNA repair endonuclea... 170 8.8e-12 2
CGD|CAL0003758 - symbol:RAD2 species:5476 "Candida albica... 194 9.1e-12 1
UNIPROTKB|Q59TL2 - symbol:RAD2 "Putative uncharacterized ... 194 9.1e-12 1
TAIR|locus:2194085 - symbol:AT1G18090 species:3702 "Arabi... 170 1.0e-10 2
RGD|1309465 - symbol:Exo1 "exonuclease 1" species:10116 "... 183 1.2e-10 1
POMBASE|SPAC12G12.16c - symbol:SPAC12G12.16c "Fen1 family... 179 1.4e-10 1
UNIPROTKB|F1S8P2 - symbol:EXO1 "Uncharacterized protein" ... 186 1.8e-10 2
UNIPROTKB|E1BF15 - symbol:EXO1 "Uncharacterized protein" ... 183 1.9e-10 2
UNIPROTKB|Q9W6K2 - symbol:exo1 "Exonuclease 1" species:83... 180 2.0e-10 1
MGI|MGI:1349427 - symbol:Exo1 "exonuclease 1" species:100... 180 2.5e-10 1
DICTYBASE|DDB_G0291570 - symbol:exo1 "5'3'-exonuclease N-... 181 2.6e-10 1
UNIPROTKB|Q9UQ84 - symbol:EXO1 "Exonuclease 1" species:96... 180 5.4e-10 2
UNIPROTKB|E2QWL7 - symbol:EXO1 "Uncharacterized protein" ... 181 1.0e-09 2
UNIPROTKB|G4NE19 - symbol:MGG_00841 "Exonuclease 1" speci... 178 1.1e-09 2
ZFIN|ZDB-GENE-050327-28 - symbol:ercc5 "excision repair c... 147 2.8e-09 2
UNIPROTKB|E1C1G7 - symbol:EXO1 "Uncharacterized protein" ... 167 6.1e-09 1
ZFIN|ZDB-GENE-040426-2828 - symbol:exo1 "exonuclease 1" s... 163 1.7e-08 1
POMBASE|SPBC3E7.08c - symbol:rad13 "DNA repair nuclease R... 167 3.7e-08 2
SGD|S000003490 - symbol:RAD2 "Single-stranded DNA endonuc... 161 3.9e-08 1
ASPGD|ASPL0000033989 - symbol:AN3035 species:162425 "Emer... 156 9.2e-08 1
ASPGD|ASPL0000027656 - symbol:AN5216 species:162425 "Emer... 158 1.8e-07 2
FB|FBgn0263831 - symbol:Gen "XPG-like endonuclease" speci... 138 4.1e-07 2
TAIR|locus:2091343 - symbol:UVH3 "ULTRAVIOLET HYPERSENSIT... 157 4.3e-07 2
UNIPROTKB|E1C986 - symbol:Gga.42587 "Uncharacterized prot... 133 4.6e-07 1
FB|FBgn0015553 - symbol:tos "tosca" species:7227 "Drosoph... 149 5.1e-07 1
MGI|MGI:2443149 - symbol:Gen1 "Gen homolog 1, endonucleas... 149 6.8e-07 1
MGI|MGI:103582 - symbol:Ercc5 "excision repair cross-comp... 124 2.5e-06 2
UNIPROTKB|I3LQY2 - symbol:ERCC5 "Uncharacterized protein"... 121 3.0e-06 2
UNIPROTKB|I3LHP7 - symbol:I3LHP7 "Uncharacterized protein... 116 3.5e-06 1
SGD|S000005559 - symbol:EXO1 "5'-3' exonuclease and flap-... 141 3.6e-06 1
SGD|S000002671 - symbol:DIN7 "Mitochondrial nuclease func... 138 3.6e-06 1
WB|WBGene00019004 - symbol:xpg-1 species:6239 "Caenorhabd... 141 4.4e-06 1
RGD|1559792 - symbol:Gen1 "Gen endonuclease homolog 1 (Dr... 141 5.0e-06 1
UNIPROTKB|Q3B7N6 - symbol:ERCC5 "Uncharacterized protein"... 119 5.6e-06 2
UNIPROTKB|P28715 - symbol:ERCC5 "DNA repair protein compl... 123 8.4e-06 2
FB|FBgn0002887 - symbol:mus201 "mutagen-sensitive 201" sp... 139 1.2e-05 1
UNIPROTKB|E1B8D0 - symbol:GEN1 "Uncharacterized protein" ... 137 1.4e-05 1
UNIPROTKB|J9P9A3 - symbol:BIVM "Uncharacterized protein" ... 120 1.7e-05 2
UNIPROTKB|F1P266 - symbol:ERCC5 "Uncharacterized protein"... 124 2.3e-05 2
UNIPROTKB|F1P953 - symbol:BIVM "Uncharacterized protein" ... 120 3.4e-05 2
CGD|CAL0003631 - symbol:EXO1 species:5476 "Candida albica... 132 3.4e-05 1
RGD|1586176 - symbol:Ercc5 "excision repair cross-complem... 124 3.5e-05 1
UNIPROTKB|E1BC95 - symbol:ERCC5 "Uncharacterized protein"... 119 5.6e-05 3
UNIPROTKB|E1BWF2 - symbol:Gga.42587 "Uncharacterized prot... 132 5.6e-05 2
UNIPROTKB|F1SCS5 - symbol:GEN1 "Uncharacterized protein" ... 131 6.2e-05 1
UNIPROTKB|E1C3E4 - symbol:Gga.42587 "Uncharacterized prot... 121 8.2e-05 1
UNIPROTKB|Q9HD60 - symbol:ERCC5 "DNA repair protein-compl... 119 0.00012 1
UNIPROTKB|Q17RS7 - symbol:GEN1 "Flap endonuclease GEN hom... 128 0.00013 1
UNIPROTKB|E2QU72 - symbol:GEN1 "Uncharacterized protein" ... 130 0.00036 2
WB|WBGene00009731 - symbol:exo-1 species:6239 "Caenorhabd... 122 0.00037 1
UNIPROTKB|E1BZY2 - symbol:ERCC5 "Uncharacterized protein"... 124 0.00040 1
UNIPROTKB|Q64MA3 - symbol:RAD "Flap endonuclease GEN-like... 121 0.00052 2
DICTYBASE|DDB_G0294290 - symbol:DDB_G0294290 "xeroderma p... 122 0.00064 1
POMBASE|SPBC29A10.05 - symbol:exo1 "exonuclease I Exo1" s... 119 0.00068 1
TAIR|locus:2099463 - symbol:AT3G48900 species:3702 "Arabi... 119 0.00073 1
GENEDB_PFALCIPARUM|PF07_0105 - symbol:PF07_0105 "exonucle... 122 0.00093 1
UNIPROTKB|Q8IBK1 - symbol:PF07_0105 "Exonuclease I, putat... 122 0.00093 1
UNIPROTKB|Q29FC1 - symbol:Gen "Flap endonuclease GEN" spe... 127 0.00096 2
>ZFIN|ZDB-GENE-031112-11 [details] [associations]
symbol:fen1 "flap structure-specific endonuclease 1"
species:7955 "Danio rerio" [GO:0016788 "hydrolase activity, acting
on ester bonds" evidence=IEA] [GO:0003824 "catalytic activity"
evidence=IEA] [GO:0004518 "nuclease activity" evidence=IEA]
[GO:0006281 "DNA repair" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0060041 "retina development in camera-type eye"
evidence=IMP] [GO:0046872 "metal ion binding" evidence=IEA]
[GO:0004527 "exonuclease activity" evidence=IEA] [GO:0006260 "DNA
replication" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0004519
"endonuclease activity" evidence=IEA] [GO:0005739 "mitochondrion"
evidence=IEA] [GO:0006974 "response to DNA damage stimulus"
evidence=IEA] [GO:0008409 "5'-3' exonuclease activity"
evidence=IEA] [GO:0017108 "5'-flap endonuclease activity"
evidence=IEA] [GO:0043137 "DNA replication, removal of RNA primer"
evidence=IEA] [GO:0006284 "base-excision repair" evidence=IEA]
[GO:0000287 "magnesium ion binding" evidence=IEA] [GO:0005654
"nucleoplasm" evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
HAMAP:MF_00614 InterPro:IPR006084 InterPro:IPR006085
InterPro:IPR006086 InterPro:IPR008918 InterPro:IPR019974
InterPro:IPR020045 InterPro:IPR023426 Pfam:PF00752 Pfam:PF00867
PRINTS:PR00853 PROSITE:PS00841 PROSITE:PS00842 SMART:SM00279
SMART:SM00484 SMART:SM00485 ZFIN:ZDB-GENE-031112-11 GO:GO:0005739
GO:GO:0005654 GO:GO:0005730 GO:GO:0046872 GO:GO:0003677
GO:GO:0006260 GO:GO:0006281 GO:GO:0060041 GO:GO:0004527
GO:GO:0090305 GO:GO:0004519 eggNOG:COG0258 PANTHER:PTHR11081
SUPFAM:SSF47807 EMBL:AY391423 EMBL:AY648844 EMBL:BC049413
EMBL:BC071488 IPI:IPI00484274 IPI:IPI00973671 RefSeq:NP_942115.1
UniGene:Dr.75750 HSSP:O93634 ProteinModelPortal:Q6TNU4 SMR:Q6TNU4
STRING:Q6TNU4 PRIDE:Q6TNU4 Ensembl:ENSDART00000024224 GeneID:386707
KEGG:dre:386707 CTD:2237 GeneTree:ENSGT00640000091478
HOGENOM:HOG000193853 HOVERGEN:HBG000844 InParanoid:Q6DRB5 KO:K04799
OMA:DYDSLLF OrthoDB:EOG415GDQ NextBio:20813986 Bgee:Q6TNU4
Uniprot:Q6TNU4
Length = 380
Score = 559 (201.8 bits), Expect = 2.5e-73, Sum P(2) = 2.5e-73
Identities = 104/177 (58%), Positives = 134/177 (75%)
Query: 25 EDRIRNGAKKLLKARSSTTQGRLDSFFTIRREEKRKAPCEAEAQCAAMVKAGKVYATATE 84
++ I +K+L+K + ++ +APCEAEA CAA+VKAGKVYATATE
Sbjct: 120 QENIDKFSKRLVKVTKQHNE-ECKKLLSLMGVPYIEAPCEAEASCAALVKAGKVYATATE 178
Query: 85 DMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVLEGMELSHEEFIDLCILLGCDYCDSI 144
DMD LTFG+ +LLRH+T SEA+KLP+QEFH ++L+ MEL+H++FIDLCILLGCDYC +I
Sbjct: 179 DMDGLTFGTTVLLRHLTASEAKKLPIQEFHFSRILQDMELTHQQFIDLCILLGCDYCGTI 238
Query: 145 RGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGWLYKEARELFRHPEVADPETIE 201
+GIGPKRAI+LIK+H SIE+ILENID K+ PE WLYKEAR LF PEV D +++
Sbjct: 239 KGIGPKRAIDLIKQHGSIEEILENIDPNKHPAPEDWLYKEARGLFLEPEVVDGTSVD 295
Score = 365 (133.5 bits), Expect = 6.9e-53, Sum P(2) = 6.9e-53
Identities = 76/125 (60%), Positives = 94/125 (75%)
Query: 304 ELVADVAPSSIRE-------SRKICIDASMSLYQFLIAVRSEGNQLMSVDGEPTSHLMGT 356
+L+AD APS+I+E RKI IDASM +YQFLIAVR +GN L + DGE TSHLMG
Sbjct: 8 KLIADHAPSAIKEHEIKSYFGRKIAIDASMCIYQFLIAVRQDGNVLQNEDGETTSHLMGM 67
Query: 357 FYRTIRLVEHGLKPIYVFDGKPPTLKSGELNKRMEKREDAQKALAKAQEQGKLKWSDPDE 416
FYRTIR++E G+KP+YVFDGKPP LKSGEL KR+E+R +A+K LA+AQE G+ + D
Sbjct: 68 FYRTIRMLESGIKPVYVFDGKPPQLKSGELEKRVERRAEAEKLLAQAQEAGEQENIDKFS 127
Query: 417 DGLVK 421
LVK
Sbjct: 128 KRLVK 132
Score = 284 (105.0 bits), Expect = 1.4e-43, Sum P(2) = 1.4e-43
Identities = 53/81 (65%), Positives = 65/81 (80%)
Query: 226 IELLYS-FIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGWL 284
+EL + FIDLCILLGCDYC +I+GIGPKRAI+LIK+H SIE+ILENID K+ PE WL
Sbjct: 216 MELTHQQFIDLCILLGCDYCGTIKGIGPKRAIDLIKQHGSIEEILENIDPNKHPAPEDWL 275
Query: 285 YKEARELFRHPEIADPETIEL 305
YKEAR LF PE+ D +++L
Sbjct: 276 YKEARGLFLEPEVVDGTSVDL 296
Score = 208 (78.3 bits), Expect = 3.7e-14, P = 3.7e-14
Identities = 36/62 (58%), Positives = 49/62 (79%)
Query: 3 LKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSSTTQGRLDSFFTIRRE--EKRK 60
LKW++PDEDGL++++C +K F+EDRIRNG KK+ K+R +TQGRLD+FFT+ KRK
Sbjct: 296 LKWNEPDEDGLIQFMCAEKQFSEDRIRNGCKKITKSRQGSTQGRLDTFFTVTGSISSKRK 355
Query: 61 AP 62
P
Sbjct: 356 EP 357
Score = 200 (75.5 bits), Expect = 2.5e-73, Sum P(2) = 2.5e-73
Identities = 35/60 (58%), Positives = 48/60 (80%)
Query: 409 LKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSTTTQGRLDSFFTIRRE--EKRK 466
LKW++PDEDGL++++C +K F+EDRIRNG KK+ K+R +TQGRLD+FFT+ KRK
Sbjct: 296 LKWNEPDEDGLIQFMCAEKQFSEDRIRNGCKKITKSRQGSTQGRLDTFFTVTGSISSKRK 355
Score = 135 (52.6 bits), Expect = 3.3e-23, Sum P(2) = 3.3e-23
Identities = 23/29 (79%), Positives = 28/29 (96%)
Query: 201 EFIDLCILLGCDYCDSIRGIGPKRAIELL 229
+FIDLCILLGCDYC +I+GIGPKRAI+L+
Sbjct: 222 QFIDLCILLGCDYCGTIKGIGPKRAIDLI 250
>FB|FBgn0025832 [details] [associations]
symbol:Fen1 "Flap endonuclease 1" species:7227 "Drosophila
melanogaster" [GO:0005634 "nucleus" evidence=IC] [GO:0048256 "flap
endonuclease activity" evidence=ISS] [GO:0006281 "DNA repair"
evidence=ISS] [GO:0004519 "endonuclease activity" evidence=ISS]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0022008 "neurogenesis"
evidence=IMP] HAMAP:MF_00614 InterPro:IPR003583 InterPro:IPR006084
InterPro:IPR006085 InterPro:IPR006086 InterPro:IPR008918
InterPro:IPR019974 InterPro:IPR020045 InterPro:IPR023426
Pfam:PF00752 Pfam:PF00867 PRINTS:PR00853 PROSITE:PS00841
PROSITE:PS00842 SMART:SM00278 SMART:SM00279 SMART:SM00484
SMART:SM00485 EMBL:AE013599 GO:GO:0005739 GO:GO:0005654
GO:GO:0005730 GO:GO:0022008 GO:GO:0046872 GO:GO:0003677
GO:GO:0006260 GO:GO:0006281 GO:GO:0004527 GO:GO:0004519
eggNOG:COG0258 PANTHER:PTHR11081 SUPFAM:SSF47807 EMBL:AL031863
CTD:2237 GeneTree:ENSGT00640000091478 KO:K04799 OMA:DYDSLLF
EMBL:BT100031 PIR:T13692 RefSeq:NP_523765.1 UniGene:Dm.23253
HSSP:O50123 ProteinModelPortal:Q7K7A9 SMR:Q7K7A9 STRING:Q7K7A9
PaxDb:Q7K7A9 PRIDE:Q7K7A9 EnsemblMetazoa:FBtr0087075 GeneID:36887
KEGG:dme:Dmel_CG8648 UCSC:CG8648-RA FlyBase:FBgn0025832
InParanoid:Q7K7A9 OrthoDB:EOG4W0VVR PhylomeDB:Q7K7A9
GenomeRNAi:36887 NextBio:800894 Bgee:Q7K7A9 Uniprot:Q7K7A9
Length = 385
Score = 556 (200.8 bits), Expect = 6.0e-72, Sum P(2) = 6.0e-72
Identities = 103/141 (73%), Positives = 124/141 (87%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVLE 120
APCEAEAQCAA+VKAGKVYATATEDMDALTFGS LLR++T+SEARK+PV+EF +K+LE
Sbjct: 155 APCEAEAQCAALVKAGKVYATATEDMDALTFGSTKLLRYLTYSEARKMPVKEFSYDKLLE 214
Query: 121 GMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGW 180
G+ +++ EFIDLCILLGCDYC+SI+GIGPKRAIELI +R IE IL+N+D+ KYTVPE W
Sbjct: 215 GLAINNREFIDLCILLGCDYCESIKGIGPKRAIELINTYRDIETILDNLDSSKYTVPENW 274
Query: 181 LYKEARELFRHPEVADPETIE 201
YK ARELF PEVAD ++I+
Sbjct: 275 NYKVARELFIEPEVADADSID 295
Score = 370 (135.3 bits), Expect = 2.3e-52, Sum P(2) = 2.3e-52
Identities = 74/111 (66%), Positives = 91/111 (81%)
Query: 304 ELVADVAPSSIRES-------RKICIDASMSLYQFLIAVRSEGNQLMSVDGEPTSHLMGT 356
+L+AD+AP +IRES RK+ IDASM LYQFLIAVRSEG QL +V+G+PTSHLMG
Sbjct: 8 KLIADLAPQAIRESEMKHFFGRKVAIDASMCLYQFLIAVRSEGAQLATVNGDPTSHLMGM 67
Query: 357 FYRTIRLVEHGLKPIYVFDGKPPTLKSGELNKRMEKREDAQKALAKAQEQG 407
FYRTIRL+++G+KP+YVFDGKPP LKSGEL KR E+RE+A+KAL A + G
Sbjct: 68 FYRTIRLLDNGIKPVYVFDGKPPDLKSGELAKRAERREEAEKALKAATDAG 118
Score = 302 (111.4 bits), Expect = 1.3e-26, P = 1.3e-26
Identities = 64/130 (49%), Positives = 85/130 (65%)
Query: 232 FIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGWLYKEAREL 291
FIDLCILLGCDYC+SI+GIGPKRAIELI +R IE IL+N+D+ KYTVPE W YK AREL
Sbjct: 223 FIDLCILLGCDYCESIKGIGPKRAIELINTYRDIETILDNLDSSKYTVPENWNYKVAREL 282
Query: 292 FRHPEIADPETIELVADVAPSSIRESRKICIDASMSLYQFLIAVRSEGNQLMSVDGEPTS 351
F PE+AD ++I+L V P + +C D + + VR+ +LM T
Sbjct: 283 FIEPEVADADSIDLKW-VEPDEEGLVKFLCGDRQFNEER----VRNGAKKLMKSKQAQTQ 337
Query: 352 HLMGTFYRTI 361
+ +F++T+
Sbjct: 338 VRLDSFFKTL 347
Score = 191 (72.3 bits), Expect = 3.4e-12, P = 3.4e-12
Identities = 33/49 (67%), Positives = 43/49 (87%)
Query: 3 LKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSSTTQGRLDSFF 51
LKW +PDE+GLVK+LCGD+ F E+R+RNGAKKL+K++ + TQ RLDSFF
Sbjct: 296 LKWVEPDEEGLVKFLCGDRQFNEERVRNGAKKLMKSKQAQTQVRLDSFF 344
Score = 190 (71.9 bits), Expect = 6.0e-72, Sum P(2) = 6.0e-72
Identities = 33/49 (67%), Positives = 42/49 (85%)
Query: 409 LKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSTTTQGRLDSFF 457
LKW +PDE+GLVK+LCGD+ F E+R+RNGAKKL+K++ TQ RLDSFF
Sbjct: 296 LKWVEPDEEGLVKFLCGDRQFNEERVRNGAKKLMKSKQAQTQVRLDSFF 344
Score = 169 (64.5 bits), Expect = 1.6e-25, Sum P(2) = 1.6e-25
Identities = 56/167 (33%), Positives = 88/167 (52%)
Query: 127 EEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKY--TVPEGWL-YK 183
+E +L L+G Y D+ + A L+K + E++D + T +L Y
Sbjct: 139 KEAKELLTLMGVPYVDAPCEAEAQCAA-LVKAGKVYATATEDMDALTFGSTKLLRYLTYS 197
Query: 184 EAREL----FRHPEVADPETI---EFIDLCILLGCDYCDSIRGIGPKRAIELLYSFIDLC 236
EAR++ F + ++ + I EFIDLCILLGCDYC+SI+GIGPKRAIEL+ ++ D+
Sbjct: 198 EARKMPVKEFSYDKLLEGLAINNREFIDLCILLGCDYCESIKGIGPKRAIELINTYRDIE 257
Query: 237 ILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDT--KKYTVPE 281
+L D DS + P+ + IE + + D+ K+ P+
Sbjct: 258 TIL--DNLDSSKYTVPENWNYKVARELFIEPEVADADSIDLKWVEPD 302
>UNIPROTKB|P70054 [details] [associations]
symbol:fen1-b "Flap endonuclease 1-B" species:8355 "Xenopus
laevis" [GO:0005634 "nucleus" evidence=IDA] [GO:0006260 "DNA
replication" evidence=IPI] [GO:0006284 "base-excision repair"
evidence=ISS] [GO:0017108 "5'-flap endonuclease activity"
evidence=IDA] HAMAP:MF_00614 InterPro:IPR006084 InterPro:IPR006085
InterPro:IPR006086 InterPro:IPR008918 InterPro:IPR019974
InterPro:IPR020045 InterPro:IPR023426 Pfam:PF00752 Pfam:PF00867
PRINTS:PR00853 PROSITE:PS00841 PROSITE:PS00842 SMART:SM00279
SMART:SM00484 SMART:SM00485 GO:GO:0005739 GO:GO:0005634
GO:GO:0005654 GO:GO:0005730 GO:GO:0046872 GO:GO:0006284
GO:GO:0003677 GO:GO:0006260 GO:GO:0004527 GO:GO:0017108
PANTHER:PTHR11081 SUPFAM:SSF47807 HOVERGEN:HBG000844 KO:K04799
EMBL:U68141 EMBL:BC169390 EMBL:BC169394 RefSeq:NP_001080984.1
UniGene:Xl.530 ProteinModelPortal:P70054 SMR:P70054 GeneID:394311
KEGG:xla:394311 CTD:394311 Xenbase:XB-GENE-6254462 Uniprot:P70054
Length = 382
Score = 545 (196.9 bits), Expect = 1.6e-71, Sum P(2) = 1.6e-71
Identities = 96/141 (68%), Positives = 123/141 (87%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVLE 120
APCEAEA CAA+VKAGKVYA ATEDMDALTFG+ +LLRH+T SEA+KLP+QEFHL +V +
Sbjct: 155 APCEAEATCAALVKAGKVYAAATEDMDALTFGTPVLLRHLTASEAKKLPIQEFHLNRVFQ 214
Query: 121 GMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGW 180
+ ++HE+F+DLCILLG DYC++IRGIGPKRAI+LI++H++IE+I++NID KKY +PE W
Sbjct: 215 DIGINHEQFVDLCILLGSDYCETIRGIGPKRAIDLIRQHKTIEEIIDNIDLKKYPIPENW 274
Query: 181 LYKEARELFRHPEVADPETIE 201
L+KEAR+LF PEV D + E
Sbjct: 275 LHKEARQLFLEPEVIDADITE 295
Score = 357 (130.7 bits), Expect = 9.9e-52, Sum P(2) = 9.9e-52
Identities = 70/125 (56%), Positives = 94/125 (75%)
Query: 304 ELVADVAPSSIRE-------SRKICIDASMSLYQFLIAVRSEGNQLMSVDGEPTSHLMGT 356
+L+ADVAP++I+E RK+ +DASM +YQFLIAVR +GN L + +GE TSHLMG
Sbjct: 8 KLIADVAPAAIKEHDIKSYFGRKVAVDASMCIYQFLIAVRQDGNMLQNEEGETTSHLMGM 67
Query: 357 FYRTIRLVEHGLKPIYVFDGKPPTLKSGELNKRMEKREDAQKALAKAQEQGKLKWSDPDE 416
FYRTIR++EHG+KP+YVFDGKPP +KSGEL KR E+R +A+K L A+E G+++ +
Sbjct: 68 FYRTIRMLEHGIKPVYVFDGKPPQMKSGELAKRSERRAEAEKLLEAAEEAGEVENIEKFN 127
Query: 417 DGLVK 421
LVK
Sbjct: 128 KRLVK 132
Score = 283 (104.7 bits), Expect = 3.7e-43, Sum P(2) = 3.7e-43
Identities = 48/74 (64%), Positives = 64/74 (86%)
Query: 232 FIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGWLYKEAREL 291
F+DLCILLG DYC++IRGIGPKRAI+LI++H++IE+I++NID KKY +PE WL+KEAR+L
Sbjct: 223 FVDLCILLGSDYCETIRGIGPKRAIDLIRQHKTIEEIIDNIDLKKYPIPENWLHKEARQL 282
Query: 292 FRHPEIADPETIEL 305
F PE+ D + EL
Sbjct: 283 FLEPEVIDADITEL 296
Score = 198 (74.8 bits), Expect = 5.2e-13, P = 5.2e-13
Identities = 34/51 (66%), Positives = 43/51 (84%)
Query: 3 LKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSSTTQGRLDSFFTI 53
LKW++PDE+GLV ++CG+K F+EDRIRNGAKKL K R +TQGRLD FF +
Sbjct: 296 LKWTEPDEEGLVAFMCGEKQFSEDRIRNGAKKLAKNRQGSTQGRLDDFFKV 346
Score = 197 (74.4 bits), Expect = 1.6e-71, Sum P(2) = 1.6e-71
Identities = 34/52 (65%), Positives = 44/52 (84%)
Query: 408 KLKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSTTTQGRLDSFFTI 459
+LKW++PDE+GLV ++CG+K F+EDRIRNGAKKL K R +TQGRLD FF +
Sbjct: 295 ELKWTEPDEEGLVAFMCGEKQFSEDRIRNGAKKLAKNRQGSTQGRLDDFFKV 346
Score = 133 (51.9 bits), Expect = 1.3e-22, Sum P(2) = 1.3e-22
Identities = 59/214 (27%), Positives = 96/214 (44%)
Query: 28 IRNGAKKLLKARSSTTQGRLDSFF-TIRREEKRKAPCEAEAQCAAMVKAGKVYATATEDM 86
+R L TT + F+ TIR E P +K+G++ +
Sbjct: 46 VRQDGNMLQNEEGETTSHLMGMFYRTIRMLEHGIKPVYVFDGKPPQMKSGELAKRSERRA 105
Query: 87 DALTFGSNILLRHMTFSEARKLP-VQEFHLEKVLEGMELSHEEFIDLCILLGCDYCDSIR 145
+A LL EA ++ +++F+ +++++ + +EE L L+G Y D+
Sbjct: 106 EA-----EKLLE--AAEEAGEVENIEKFN-KRLVKVTKQHNEECKKLLSLMGIPYVDAPC 157
Query: 146 GIGPKRAIELIKEHRSIEKILENIDTKKYTVP---EGWLYKEAREL----FRHPEVADPE 198
A L+K + E++D + P EA++L F V
Sbjct: 158 EAEATCAA-LVKAGKVYAAATEDMDALTFGTPVLLRHLTASEAKKLPIQEFHLNRVFQDI 216
Query: 199 TI---EFIDLCILLGCDYCDSIRGIGPKRAIELL 229
I +F+DLCILLG DYC++IRGIGPKRAI+L+
Sbjct: 217 GINHEQFVDLCILLGSDYCETIRGIGPKRAIDLI 250
>UNIPROTKB|P70040 [details] [associations]
symbol:fen1-a "Flap endonuclease 1-A" species:8355 "Xenopus
laevis" [GO:0005634 "nucleus" evidence=IDA] [GO:0006260 "DNA
replication" evidence=IPI] [GO:0006284 "base-excision repair"
evidence=IDA] [GO:0017108 "5'-flap endonuclease activity"
evidence=IDA] HAMAP:MF_00614 InterPro:IPR006084 InterPro:IPR006085
InterPro:IPR006086 InterPro:IPR008918 InterPro:IPR019974
InterPro:IPR020045 InterPro:IPR023426 Pfam:PF00752 Pfam:PF00867
PRINTS:PR00853 PROSITE:PS00841 PROSITE:PS00842 SMART:SM00279
SMART:SM00484 SMART:SM00485 GO:GO:0005739 GO:GO:0005634
GO:GO:0005654 GO:GO:0005730 GO:GO:0046872 GO:GO:0006284
GO:GO:0003677 GO:GO:0006260 GO:GO:0004527 GO:GO:0017108
PANTHER:PTHR11081 SUPFAM:SSF47807 HOVERGEN:HBG000844 KO:K04799
EMBL:AF036327 EMBL:U64563 EMBL:AF065397 EMBL:BC169761 EMBL:BC169765
EMBL:BC124977 RefSeq:NP_001080960.1 UniGene:Xl.440
ProteinModelPortal:P70040 SMR:P70040 IntAct:P70040 PRIDE:P70040
GeneID:394303 KEGG:xla:394303 CTD:394303 Xenbase:XB-GENE-955523
Uniprot:P70040
Length = 382
Score = 543 (196.2 bits), Expect = 5.3e-71, Sum P(2) = 5.3e-71
Identities = 100/176 (56%), Positives = 133/176 (75%)
Query: 26 DRIRNGAKKLLKARSSTTQGRLDSFFTIRREEKRKAPCEAEAQCAAMVKAGKVYATATED 85
+ I K+L+K + T+ APCEAEA CAA+VKAGKVYA ATED
Sbjct: 121 ENIEKFTKRLVKVTKQHNE-ECKKLLTLMGIPYVDAPCEAEATCAALVKAGKVYAAATED 179
Query: 86 MDALTFGSNILLRHMTFSEARKLPVQEFHLEKVLEGMELSHEEFIDLCILLGCDYCDSIR 145
MDALTFG+ +LLRH+T SEA+KLP+QEFHL +V++ + ++HE+F+DLCILLG DYC++IR
Sbjct: 180 MDALTFGTPVLLRHLTASEAKKLPIQEFHLNRVIQDIGITHEQFVDLCILLGSDYCETIR 239
Query: 146 GIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGWLYKEARELFRHPEVADPETIE 201
GIGPKRAI+LI++H++I++I++NID KKY VPE WL+KEA+ LF PEV D + E
Sbjct: 240 GIGPKRAIDLIRQHKTIDEIIDNIDLKKYPVPENWLHKEAKHLFLEPEVVDTDITE 295
Score = 358 (131.1 bits), Expect = 1.6e-51, Sum P(2) = 1.6e-51
Identities = 71/125 (56%), Positives = 94/125 (75%)
Query: 304 ELVADVAPSSIRE-------SRKICIDASMSLYQFLIAVRSEGNQLMSVDGEPTSHLMGT 356
+L+ADVAP++I+E RK+ +DASM +YQFLIAVR +GN L + +GE TSHLMG
Sbjct: 8 KLIADVAPAAIKEHDIKSYFGRKVAVDASMCIYQFLIAVRQDGNTLQNEEGETTSHLMGM 67
Query: 357 FYRTIRLVEHGLKPIYVFDGKPPTLKSGELNKRMEKREDAQKALAKAQEQGKLKWSDPDE 416
FYRTIR+VEHG+KP+YVFDGKPP +KSGEL KR E+R +A+K L A+E G+++ +
Sbjct: 68 FYRTIRMVEHGIKPVYVFDGKPPQMKSGELAKRSERRAEAEKLLEAAEEAGEVENIEKFT 127
Query: 417 DGLVK 421
LVK
Sbjct: 128 KRLVK 132
Score = 277 (102.6 bits), Expect = 1.4e-40, Sum P(2) = 1.4e-40
Identities = 47/74 (63%), Positives = 63/74 (85%)
Query: 232 FIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGWLYKEAREL 291
F+DLCILLG DYC++IRGIGPKRAI+LI++H++I++I++NID KKY VPE WL+KEA+ L
Sbjct: 223 FVDLCILLGSDYCETIRGIGPKRAIDLIRQHKTIDEIIDNIDLKKYPVPENWLHKEAKHL 282
Query: 292 FRHPEIADPETIEL 305
F PE+ D + EL
Sbjct: 283 FLEPEVVDTDITEL 296
Score = 206 (77.6 bits), Expect = 6.3e-14, P = 6.3e-14
Identities = 40/73 (54%), Positives = 51/73 (69%)
Query: 3 LKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSSTTQGRLDSFFTIRREEKRKAP 62
LKW +PDE+GLV ++CG+K F+EDRIRNGAKKL K R +TQGRLD FF +
Sbjct: 296 LKWIEPDEEGLVAFMCGEKQFSEDRIRNGAKKLAKNRQGSTQGRLDDFFKVTGSVSSTKR 355
Query: 63 CEAEAQCAAMVKA 75
EAE++ +A KA
Sbjct: 356 KEAESKGSAKKKA 368
Score = 194 (73.4 bits), Expect = 5.3e-71, Sum P(2) = 5.3e-71
Identities = 34/52 (65%), Positives = 43/52 (82%)
Query: 408 KLKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSTTTQGRLDSFFTI 459
+LKW +PDE+GLV ++CG+K F+EDRIRNGAKKL K R +TQGRLD FF +
Sbjct: 295 ELKWIEPDEEGLVAFMCGEKQFSEDRIRNGAKKLAKNRQGSTQGRLDDFFKV 346
Score = 135 (52.6 bits), Expect = 1.8e-22, Sum P(2) = 1.8e-22
Identities = 59/213 (27%), Positives = 92/213 (43%)
Query: 28 IRNGAKKLLKARSSTTQGRLDSFF-TIRREEKRKAPCEAEAQCAAMVKAGKVYATATEDM 86
+R L TT + F+ TIR E P +K+G++ +
Sbjct: 46 VRQDGNTLQNEEGETTSHLMGMFYRTIRMVEHGIKPVYVFDGKPPQMKSGELAKRSERRA 105
Query: 87 DALTFGSNILLRHMTFSEARKLPVQEFHLEKVLEGMELSHEEFIDLCILLGCDYCDSIRG 146
+A LL EA ++ E +++++ + +EE L L+G Y D+
Sbjct: 106 EA-----EKLLE--AAEEAGEVENIEKFTKRLVKVTKQHNEECKKLLTLMGIPYVDAPCE 158
Query: 147 IGPKRAIELIKEHRSIEKILENIDTKKYTVP---EGWLYKEAREL----FRHPEVADPET 199
A L+K + E++D + P EA++L F V
Sbjct: 159 AEATCAA-LVKAGKVYAAATEDMDALTFGTPVLLRHLTASEAKKLPIQEFHLNRVIQDIG 217
Query: 200 I---EFIDLCILLGCDYCDSIRGIGPKRAIELL 229
I +F+DLCILLG DYC++IRGIGPKRAI+L+
Sbjct: 218 ITHEQFVDLCILLGSDYCETIRGIGPKRAIDLI 250
>UNIPROTKB|Q5ZLN4 [details] [associations]
symbol:FEN1 "Flap endonuclease 1" species:9031 "Gallus
gallus" [GO:0000287 "magnesium ion binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0006284 "base-excision
repair" evidence=IEA] [GO:0008409 "5'-3' exonuclease activity"
evidence=IEA] [GO:0017108 "5'-flap endonuclease activity"
evidence=IEA] [GO:0043137 "DNA replication, removal of RNA primer"
evidence=IEA] [GO:0005654 "nucleoplasm" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA] [GO:0005739 "mitochondrion" evidence=IEA]
[GO:0004523 "ribonuclease H activity" evidence=IEA] [GO:0030145
"manganese ion binding" evidence=IEA] HAMAP:MF_00614
InterPro:IPR006084 InterPro:IPR006085 InterPro:IPR006086
InterPro:IPR008918 InterPro:IPR019974 InterPro:IPR020045
InterPro:IPR023426 Pfam:PF00752 Pfam:PF00867 PRINTS:PR00853
PROSITE:PS00841 PROSITE:PS00842 SMART:SM00279 SMART:SM00484
SMART:SM00485 GO:GO:0005739 GO:GO:0005654 GO:GO:0005730
GO:GO:0000287 GO:GO:0003677 GO:GO:0006281 GO:GO:0030145
GO:GO:0090305 GO:GO:0004523 GO:GO:0017108 GO:GO:0043137
GO:GO:0008409 eggNOG:COG0258 PANTHER:PTHR11081 SUPFAM:SSF47807
CTD:2237 GeneTree:ENSGT00640000091478 HOGENOM:HOG000193853
HOVERGEN:HBG000844 KO:K04799 OMA:DYDSLLF OrthoDB:EOG415GDQ
EMBL:AB058602 EMBL:AJ719700 IPI:IPI00598102 RefSeq:NP_001072959.1
UniGene:Gga.4353 ProteinModelPortal:Q5ZLN4 SMR:Q5ZLN4 STRING:Q5ZLN4
PRIDE:Q5ZLN4 Ensembl:ENSGALT00000005734 GeneID:769677
KEGG:gga:769677 InParanoid:Q5ZLN4 NextBio:20919905 Uniprot:Q5ZLN4
Length = 381
Score = 543 (196.2 bits), Expect = 6.8e-69, Sum P(2) = 6.8e-69
Identities = 101/177 (57%), Positives = 135/177 (76%)
Query: 25 EDRIRNGAKKLLKARSSTTQGRLDSFFTIRREEKRKAPCEAEAQCAAMVKAGKVYATATE 84
E I +K+L+K T + +AP EAEA CA +VKAGKVYA ATE
Sbjct: 120 EANIEKFSKRLVKVTQQHTD-ECKKLLMLMGIPYVEAPGEAEASCATLVKAGKVYAAATE 178
Query: 85 DMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVLEGMELSHEEFIDLCILLGCDYCDSI 144
DMD LTFGS +L+RH+T SEA+KLP+QEFHL +VL+ + L+ E+F+DLCILLGCDYC+SI
Sbjct: 179 DMDCLTFGSPVLMRHLTASEAKKLPIQEFHLNRVLQDLGLTWEQFVDLCILLGCDYCESI 238
Query: 145 RGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGWLYKEARELFRHPEVADPETIE 201
RGIGPKRA+ELIK+H++IE+I+++IDTKKY +PE WL+KEA++LF P+V +P+ +E
Sbjct: 239 RGIGPKRAVELIKQHKTIEEIIQHIDTKKYPLPENWLHKEAQKLFLEPDVINPDDVE 295
Score = 351 (128.6 bits), Expect = 1.1e-48, Sum P(2) = 1.1e-48
Identities = 71/112 (63%), Positives = 88/112 (78%)
Query: 304 ELVADVAPSSIRES-------RKICIDASMSLYQFLIAVRSEGNQLMSVDGEPTSHLMGT 356
+L+ADVAPS+IRE+ RK+ IDASMS+YQFLIAVR L + +GE TSHLMG
Sbjct: 8 KLIADVAPSAIRENDIKSYFGRKVAIDASMSIYQFLIAVRQGAEVLQNEEGETTSHLMGM 67
Query: 357 FYRTIRLVEHGLKPIYVFDGKPPTLKSGELNKRMEKREDAQKALAKAQEQGK 408
FYRTIR+VE+G+KP+YVFDGKPP LKSGEL KR E+R +A+K L +AQE G+
Sbjct: 68 FYRTIRMVENGIKPVYVFDGKPPQLKSGELAKRTERRSEAEKHLQEAQEAGE 119
Score = 299 (110.3 bits), Expect = 1.1e-42, Sum P(2) = 1.1e-42
Identities = 49/74 (66%), Positives = 68/74 (91%)
Query: 232 FIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGWLYKEAREL 291
F+DLCILLGCDYC+SIRGIGPKRA+ELIK+H++IE+I+++IDTKKY +PE WL+KEA++L
Sbjct: 223 FVDLCILLGCDYCESIRGIGPKRAVELIKQHKTIEEIIQHIDTKKYPLPENWLHKEAQKL 282
Query: 292 FRHPEIADPETIEL 305
F P++ +P+ +EL
Sbjct: 283 FLEPDVINPDDVEL 296
Score = 186 (70.5 bits), Expect = 1.2e-11, P = 1.2e-11
Identities = 40/83 (48%), Positives = 55/83 (66%)
Query: 3 LKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSSTTQGRLDSFFTIR---REEKR 59
LKW++P+E+ LV+++CG+K F E+RIRNG K+L K+R +TQGRLD FF + KR
Sbjct: 296 LKWTEPNEEELVQFMCGEKQFNEERIRNGVKRLSKSRQGSTQGRLDDFFKVTGSITSAKR 355
Query: 60 KAPCEAEAQCAAMVKAGKVYATA 82
K P E + +A KA ATA
Sbjct: 356 KEP---ETKGSAKKKAKTNSATA 375
Score = 174 (66.3 bits), Expect = 6.8e-69, Sum P(2) = 6.8e-69
Identities = 29/52 (55%), Positives = 43/52 (82%)
Query: 408 KLKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSTTTQGRLDSFFTI 459
+LKW++P+E+ LV+++CG+K F E+RIRNG K+L K+R +TQGRLD FF +
Sbjct: 295 ELKWTEPNEEELVQFMCGEKQFNEERIRNGVKRLSKSRQGSTQGRLDDFFKV 346
Score = 163 (62.4 bits), Expect = 5.0e-23, Sum P(2) = 5.0e-23
Identities = 63/217 (29%), Positives = 100/217 (46%)
Query: 28 IRNGAKKLLKARSSTTQGRLDSFF-TIRREEKRKAPCEAEAQCAAMVKAGKVYATATEDM 86
+R GA+ L TT + F+ TIR E P +K+G++ A TE
Sbjct: 46 VRQGAEVLQNEEGETTSHLMGMFYRTIRMVENGIKPVYVFDGKPPQLKSGEL-AKRTERR 104
Query: 87 DALTFGSNILLRHMTFSEARKLPVQEFHLEKVLEGMELSHEEFIDLC----ILLGCDYCD 142
+H+ EA++ +E ++EK + + ++ D C +L+G Y +
Sbjct: 105 SEAE-------KHL--QEAQEAG-EEANIEKFSKRLVKVTQQHTDECKKLLMLMGIPYVE 154
Query: 143 SIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGWLY---KEAREL----FRHPEVA 195
+ G L+K + E++D + P + EA++L F V
Sbjct: 155 A-PGEAEASCATLVKAGKVYAAATEDMDCLTFGSPVLMRHLTASEAKKLPIQEFHLNRVL 213
Query: 196 DPETI---EFIDLCILLGCDYCDSIRGIGPKRAIELL 229
+ +F+DLCILLGCDYC+SIRGIGPKRA+EL+
Sbjct: 214 QDLGLTWEQFVDLCILLGCDYCESIRGIGPKRAVELI 250
>RGD|621821 [details] [associations]
symbol:Fen1 "flap structure-specific endonuclease 1"
species:10116 "Rattus norvegicus" [GO:0000287 "magnesium ion
binding" evidence=IEA;ISO] [GO:0003677 "DNA binding"
evidence=IEA;ISO] [GO:0004523 "ribonuclease H activity"
evidence=IEA;ISO] [GO:0004527 "exonuclease activity"
evidence=ISO;NAS] [GO:0005634 "nucleus" evidence=ISO;IDA]
[GO:0005654 "nucleoplasm" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0005739 "mitochondrion" evidence=IEA;ISO]
[GO:0006260 "DNA replication" evidence=ISO] [GO:0006281 "DNA
repair" evidence=ISO] [GO:0006284 "base-excision repair"
evidence=IEA] [GO:0007613 "memory" evidence=IMP] [GO:0008409 "5'-3'
exonuclease activity" evidence=IEA;ISO] [GO:0017108 "5'-flap
endonuclease activity" evidence=IEA;ISO] [GO:0030145 "manganese ion
binding" evidence=IEA;ISO] [GO:0043137 "DNA replication, removal of
RNA primer" evidence=IEA;ISO] [GO:0048256 "flap endonuclease
activity" evidence=ISO] HAMAP:MF_00614 InterPro:IPR006084
InterPro:IPR006085 InterPro:IPR006086 InterPro:IPR008918
InterPro:IPR019974 InterPro:IPR020045 InterPro:IPR023426
Pfam:PF00752 Pfam:PF00867 PRINTS:PR00853 PROSITE:PS00841
PROSITE:PS00842 SMART:SM00279 SMART:SM00484 SMART:SM00485
RGD:621821 GO:GO:0005739 GO:GO:0005634 GO:GO:0005654 GO:GO:0005730
GO:GO:0000287 GO:GO:0003677 GO:GO:0007613 GO:GO:0006281
GO:GO:0030145 GO:GO:0004527 GO:GO:0004523 GO:GO:0017108
GO:GO:0043137 GO:GO:0008409 eggNOG:COG0258 PANTHER:PTHR11081
SUPFAM:SSF47807 EMBL:CH473953 CTD:2237 GeneTree:ENSGT00640000091478
HOGENOM:HOG000193853 HOVERGEN:HBG000844 KO:K04799 OMA:DYDSLLF
OrthoDB:EOG415GDQ EMBL:AF281018 EMBL:BC083630 IPI:IPI00199986
RefSeq:NP_445882.1 UniGene:Rn.16664 ProteinModelPortal:Q5XIP6
SMR:Q5XIP6 STRING:Q5XIP6 Ensembl:ENSRNOT00000027842 GeneID:84490
KEGG:rno:84490 InParanoid:Q9JHW7 NextBio:617038
Genevestigator:Q5XIP6 Uniprot:Q5XIP6
Length = 380
Score = 535 (193.4 bits), Expect = 1.1e-68, Sum P(2) = 1.1e-68
Identities = 99/178 (55%), Positives = 131/178 (73%)
Query: 24 AEDRIRNGAKKLLKARSSTTQGRLDSFFTIRREEKRKAPCEAEAQCAAMVKAGKVYATAT 83
AE+ + K+L+K ++ AP EAEA CAA+ KAGKVYA AT
Sbjct: 119 AEEEVEKFTKRLVKVTKQHND-ECKHLLSLMGIPYLDAPSEAEASCAALAKAGKVYAAAT 177
Query: 84 EDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVLEGMELSHEEFIDLCILLGCDYCDS 143
EDMD LTFGS +L+RH+T SEA+KLP+QEFHL +VL+ + L+ E+F+DLCILLG DYC+S
Sbjct: 178 EDMDCLTFGSPVLMRHLTASEAKKLPIQEFHLSRVLQELGLNQEQFVDLCILLGSDYCES 237
Query: 144 IRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGWLYKEARELFRHPEVADPETIE 201
+RGIGPKRA++LI++H+SIE+I+ +D KY VPE WL+KEAR+LF PEV DPE++E
Sbjct: 238 VRGIGPKRAVDLIQKHKSIEEIVRRLDPSKYPVPENWLHKEARQLFLEPEVLDPESVE 295
Score = 353 (129.3 bits), Expect = 1.6e-49, Sum P(2) = 1.6e-49
Identities = 70/111 (63%), Positives = 89/111 (80%)
Query: 304 ELVADVAPSSIRES-------RKICIDASMSLYQFLIAVRSEGNQLMSVDGEPTSHLMGT 356
+L+ADVAPS+IRE+ RK+ IDASMS+YQFLIAVR G+ L + +GE TSHLMG
Sbjct: 8 KLIADVAPSAIRENDIKSYFGRKVAIDASMSIYQFLIAVRQGGDVLQNEEGETTSHLMGM 67
Query: 357 FYRTIRLVEHGLKPIYVFDGKPPTLKSGELNKRMEKREDAQKALAKAQEQG 407
FYRTIR++E+G+KP+Y+FDGKPP LKSGEL KR E+R +A+K L +AQE G
Sbjct: 68 FYRTIRMMENGIKPVYIFDGKPPQLKSGELAKRSERRAEAEKQLQQAQEAG 118
Score = 287 (106.1 bits), Expect = 7.4e-42, Sum P(2) = 7.4e-42
Identities = 48/74 (64%), Positives = 64/74 (86%)
Query: 232 FIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGWLYKEAREL 291
F+DLCILLG DYC+S+RGIGPKRA++LI++H+SIE+I+ +D KY VPE WL+KEAR+L
Sbjct: 223 FVDLCILLGSDYCESVRGIGPKRAVDLIQKHKSIEEIVRRLDPSKYPVPENWLHKEARQL 282
Query: 292 FRHPEIADPETIEL 305
F PE+ DPE++EL
Sbjct: 283 FLEPEVLDPESVEL 296
Score = 187 (70.9 bits), Expect = 9.1e-12, P = 9.1e-12
Identities = 37/77 (48%), Positives = 51/77 (66%)
Query: 3 LKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSSTTQGRLDSFFTIR---REEKR 59
LKWS+P+E+ LVK++CG+K F+E+RIR+G K+L K+R +TQGRLD FF + KR
Sbjct: 296 LKWSEPNEEELVKFMCGEKQFSEERIRSGVKRLNKSRQGSTQGRLDDFFKVTGSLSSAKR 355
Query: 60 KAPCEAEAQCAAMVKAG 76
K P E + K G
Sbjct: 356 KEP-EPKGPAKKKAKTG 371
Score = 180 (68.4 bits), Expect = 1.1e-68, Sum P(2) = 1.1e-68
Identities = 31/55 (56%), Positives = 45/55 (81%)
Query: 405 EQGKLKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSTTTQGRLDSFFTI 459
E +LKWS+P+E+ LVK++CG+K F+E+RIR+G K+L K+R +TQGRLD FF +
Sbjct: 292 ESVELKWSEPNEEELVKFMCGEKQFSEERIRSGVKRLNKSRQGSTQGRLDDFFKV 346
Score = 133 (51.9 bits), Expect = 1.3e-20, Sum P(2) = 1.3e-20
Identities = 28/60 (46%), Positives = 40/60 (66%)
Query: 170 DTKKYTVPEGWLYKEARELFRHPEVADPETIEFIDLCILLGCDYCDSIRGIGPKRAIELL 229
+ KK + E L + +EL + E +F+DLCILLG DYC+S+RGIGPKRA++L+
Sbjct: 198 EAKKLPIQEFHLSRVLQELGLNQE-------QFVDLCILLGSDYCESVRGIGPKRAVDLI 250
>UNIPROTKB|J9PB88 [details] [associations]
symbol:FEN1 "Flap endonuclease 1" species:9615 "Canis lupus
familiaris" [GO:0005739 "mitochondrion" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA] [GO:0005654 "nucleoplasm" evidence=IEA]
[GO:0043137 "DNA replication, removal of RNA primer" evidence=IEA]
[GO:0017108 "5'-flap endonuclease activity" evidence=IEA]
[GO:0008409 "5'-3' exonuclease activity" evidence=IEA] [GO:0006284
"base-excision repair" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0000287 "magnesium ion binding" evidence=IEA]
HAMAP:MF_00614 InterPro:IPR006084 InterPro:IPR006085
InterPro:IPR006086 InterPro:IPR008918 InterPro:IPR019974
InterPro:IPR020045 InterPro:IPR023426 Pfam:PF00752 Pfam:PF00867
PRINTS:PR00853 PROSITE:PS00841 PROSITE:PS00842 SMART:SM00279
SMART:SM00484 SMART:SM00485 GO:GO:0005739 GO:GO:0005654
GO:GO:0005730 GO:GO:0000287 GO:GO:0006284 GO:GO:0003677
GO:GO:0090305 GO:GO:0017108 GO:GO:0043137 GO:GO:0008409
PANTHER:PTHR11081 SUPFAM:SSF47807 CTD:2237
GeneTree:ENSGT00640000091478 KO:K04799 OMA:DYDSLLF
EMBL:AAEX03011672 RefSeq:XP_533271.1 Ensembl:ENSCAFT00000049322
GeneID:476063 KEGG:cfa:476063 Uniprot:J9PB88
Length = 380
Score = 535 (193.4 bits), Expect = 1.8e-68, Sum P(2) = 1.8e-68
Identities = 99/178 (55%), Positives = 132/178 (74%)
Query: 24 AEDRIRNGAKKLLKARSSTTQGRLDSFFTIRREEKRKAPCEAEAQCAAMVKAGKVYATAT 83
AE+ + K+L+K ++ AP EAEA CAA+VKAGKVYA AT
Sbjct: 119 AEEEVEKFTKRLVKVTKQHND-ECKHLLSLMGIPYLDAPSEAEASCAALVKAGKVYAAAT 177
Query: 84 EDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVLEGMELSHEEFIDLCILLGCDYCDS 143
EDMD LTFGS +L+RH+T SEA+KLP+QEFHL ++L+ + L+ E+F+DLCILLG DYC+S
Sbjct: 178 EDMDCLTFGSPVLMRHLTASEAKKLPIQEFHLNRILQELGLNQEQFVDLCILLGSDYCES 237
Query: 144 IRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGWLYKEARELFRHPEVADPETIE 201
IRGIGPKRA++LI++H+SIE+I+ +D KY VPE WL+KEA++LF PEV DPE++E
Sbjct: 238 IRGIGPKRAVDLIQKHKSIEEIVRRLDPNKYPVPENWLHKEAQQLFLEPEVLDPESVE 295
Score = 348 (127.6 bits), Expect = 8.7e-49, Sum P(2) = 8.7e-49
Identities = 70/111 (63%), Positives = 88/111 (79%)
Query: 304 ELVADVAPSSIRES-------RKICIDASMSLYQFLIAVRSEGNQLMSVDGEPTSHLMGT 356
+L+ADVAPS+IRE+ RK+ IDASMS+YQFLIAVR G+ L + +GE TSHLMG
Sbjct: 8 KLIADVAPSAIRENDIKSYFGRKVAIDASMSIYQFLIAVRQGGDVLQNEEGETTSHLMGM 67
Query: 357 FYRTIRLVEHGLKPIYVFDGKPPTLKSGELNKRMEKREDAQKALAKAQEQG 407
FYRTIR++E+G+KP+YVFDGKPP LKSGEL KR E+R +A+K L +AQ G
Sbjct: 68 FYRTIRMMENGIKPVYVFDGKPPQLKSGELAKRSERRAEAEKQLQQAQAAG 118
Score = 284 (105.0 bits), Expect = 2.8e-41, Sum P(2) = 2.8e-41
Identities = 48/74 (64%), Positives = 64/74 (86%)
Query: 232 FIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGWLYKEAREL 291
F+DLCILLG DYC+SIRGIGPKRA++LI++H+SIE+I+ +D KY VPE WL+KEA++L
Sbjct: 223 FVDLCILLGSDYCESIRGIGPKRAVDLIQKHKSIEEIVRRLDPNKYPVPENWLHKEAQQL 282
Query: 292 FRHPEIADPETIEL 305
F PE+ DPE++EL
Sbjct: 283 FLEPEVLDPESVEL 296
Score = 186 (70.5 bits), Expect = 1.2e-11, P = 1.2e-11
Identities = 36/77 (46%), Positives = 51/77 (66%)
Query: 3 LKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSSTTQGRLDSFFTIR---REEKR 59
LKWS+P+E+ LVK++CG+K F+E+RIR+G ++L K+R +TQGRLD FF + KR
Sbjct: 296 LKWSEPNEEELVKFMCGEKQFSEERIRSGVRRLSKSRQGSTQGRLDDFFKVTGSLSSAKR 355
Query: 60 KAPCEAEAQCAAMVKAG 76
K P E + K G
Sbjct: 356 KEP-EPKGSAKKKAKTG 371
Score = 178 (67.7 bits), Expect = 1.8e-68, Sum P(2) = 1.8e-68
Identities = 30/55 (54%), Positives = 45/55 (81%)
Query: 405 EQGKLKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSTTTQGRLDSFFTI 459
E +LKWS+P+E+ LVK++CG+K F+E+RIR+G ++L K+R +TQGRLD FF +
Sbjct: 292 ESVELKWSEPNEEELVKFMCGEKQFSEERIRSGVRRLSKSRQGSTQGRLDDFFKV 346
Score = 135 (52.6 bits), Expect = 1.4e-20, Sum P(2) = 1.4e-20
Identities = 56/213 (26%), Positives = 96/213 (45%)
Query: 28 IRNGAKKLLKARSSTTQGRLDSFF-TIRREEKRKAPCEAEAQCAAMVKAGKVYATATEDM 86
+R G L TT + F+ TIR E P +K+G++ +
Sbjct: 46 VRQGGDVLQNEEGETTSHLMGMFYRTIRMMENGIKPVYVFDGKPPQLKSGELAKRSERRA 105
Query: 87 DALTFGSNILLRHMTFSEARKLPVQEFHLEKVLEGMELSHEEFIDLCILLGCDYCDSIRG 146
+A L+ + A + V++F +++++ + ++E L L+G Y D+
Sbjct: 106 EA-----EKQLQQAQAAGAEE-EVEKF-TKRLVKVTKQHNDECKHLLSLMGIPYLDAPSE 158
Query: 147 IGPKRAIELIKEHRSIEKILENIDTKKYTVPEGWLY---KEAREL----FRHPEVADPET 199
A L+K + E++D + P + EA++L F +
Sbjct: 159 AEASCAA-LVKAGKVYAAATEDMDCLTFGSPVLMRHLTASEAKKLPIQEFHLNRILQELG 217
Query: 200 I---EFIDLCILLGCDYCDSIRGIGPKRAIELL 229
+ +F+DLCILLG DYC+SIRGIGPKRA++L+
Sbjct: 218 LNQEQFVDLCILLGSDYCESIRGIGPKRAVDLI 250
>UNIPROTKB|P39748 [details] [associations]
symbol:FEN1 "Flap endonuclease 1" species:9606 "Homo
sapiens" [GO:0000287 "magnesium ion binding" evidence=IEA]
[GO:0007613 "memory" evidence=IEA] [GO:0030145 "manganese ion
binding" evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
[GO:0048015 "phosphatidylinositol-mediated signaling" evidence=NAS]
[GO:0006260 "DNA replication" evidence=NAS] [GO:0006281 "DNA
repair" evidence=NAS;TAS] [GO:0017108 "5'-flap endonuclease
activity" evidence=IDA;IMP] [GO:0003677 "DNA binding" evidence=IMP]
[GO:0005634 "nucleus" evidence=IDA] [GO:0008409 "5'-3' exonuclease
activity" evidence=IDA] [GO:0004523 "ribonuclease H activity"
evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0043137 "DNA replication, removal of RNA primer" evidence=IDA]
[GO:0005739 "mitochondrion" evidence=IDA] [GO:0004527 "exonuclease
activity" evidence=TAS] [GO:0008309 "double-stranded DNA specific
exodeoxyribonuclease activity" evidence=TAS] [GO:0003684 "damaged
DNA binding" evidence=TAS] [GO:0003690 "double-stranded DNA
binding" evidence=TAS] [GO:0004519 "endonuclease activity"
evidence=TAS] [GO:0006302 "double-strand break repair"
evidence=TAS] [GO:0009650 "UV protection" evidence=TAS] [GO:0000084
"S phase of mitotic cell cycle" evidence=TAS] [GO:0000278 "mitotic
cell cycle" evidence=TAS] [GO:0000722 "telomere maintenance via
recombination" evidence=TAS] [GO:0000723 "telomere maintenance"
evidence=TAS] [GO:0005654 "nucleoplasm" evidence=TAS] [GO:0006271
"DNA strand elongation involved in DNA replication" evidence=TAS]
[GO:0006284 "base-excision repair" evidence=TAS] [GO:0032201
"telomere maintenance via semi-conservative replication"
evidence=TAS] Reactome:REACT_216 HAMAP:MF_00614 InterPro:IPR006084
InterPro:IPR006085 InterPro:IPR006086 InterPro:IPR008918
InterPro:IPR019974 InterPro:IPR020045 InterPro:IPR023426
Pfam:PF00752 Pfam:PF00867 PRINTS:PR00853 PROSITE:PS00841
PROSITE:PS00842 SMART:SM00279 SMART:SM00484 SMART:SM00485
EMBL:AC004770 GO:GO:0005739 Reactome:REACT_115566 GO:GO:0005654
GO:GO:0005730 GO:GO:0000287 GO:GO:0006284 GO:GO:0003684
GO:GO:0030145 GO:GO:0003690 GO:GO:0006302 GO:GO:0048015
GO:GO:0000084 GO:GO:0004523 GO:GO:0000722 GO:GO:0009650
GO:GO:0017108 Reactome:REACT_383 GO:GO:0043137 GO:GO:0008409
eggNOG:COG0258 PANTHER:PTHR11081 SUPFAM:SSF47807 GO:GO:0032201
CTD:2237 HOGENOM:HOG000193853 HOVERGEN:HBG000844 KO:K04799
OMA:DYDSLLF OrthoDB:EOG415GDQ EMBL:X76771 EMBL:L37374 EMBL:AF523117
EMBL:BC000323 IPI:IPI00026215 PIR:A56531 RefSeq:NP_004102.1
UniGene:Hs.409065 UniGene:Hs.741166 PDB:1U7B PDB:1UL1 PDB:3Q8K
PDB:3Q8L PDB:3Q8M PDB:3UVU PDBsum:1U7B PDBsum:1UL1 PDBsum:3Q8K
PDBsum:3Q8L PDBsum:3Q8M PDBsum:3UVU ProteinModelPortal:P39748
SMR:P39748 DIP:DIP-24216N IntAct:P39748 MINT:MINT-5004212
STRING:P39748 PhosphoSite:P39748 DMDM:729475 PaxDb:P39748
PeptideAtlas:P39748 PRIDE:P39748 DNASU:2237 Ensembl:ENST00000305885
GeneID:2237 KEGG:hsa:2237 UCSC:uc001nsg.3 GeneCards:GC11P061560
HGNC:HGNC:3650 HPA:CAB002262 HPA:HPA006748 MIM:600393
neXtProt:NX_P39748 PharmGKB:PA28090 InParanoid:P39748
PhylomeDB:P39748 BindingDB:P39748 ChEMBL:CHEMBL5027 ChiTaRS:FEN1
EvolutionaryTrace:P39748 GenomeRNAi:2237 NextBio:9055
ArrayExpress:P39748 Bgee:P39748 CleanEx:HS_FEN1
Genevestigator:P39748 GermOnline:ENSG00000168496 GO:GO:0008309
Uniprot:P39748
Length = 380
Score = 532 (192.3 bits), Expect = 2.3e-68, Sum P(2) = 2.3e-68
Identities = 99/178 (55%), Positives = 130/178 (73%)
Query: 24 AEDRIRNGAKKLLKARSSTTQGRLDSFFTIRREEKRKAPCEAEAQCAAMVKAGKVYATAT 83
AE + K+L+K ++ AP EAEA CAA+VKAGKVYA AT
Sbjct: 119 AEQEVEKFTKRLVKVTKQHND-ECKHLLSLMGIPYLDAPSEAEASCAALVKAGKVYAAAT 177
Query: 84 EDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVLEGMELSHEEFIDLCILLGCDYCDS 143
EDMD LTFGS +L+RH+T SEA+KLP+QEFHL ++L+ + L+ E+F+DLCILLG DYC+S
Sbjct: 178 EDMDCLTFGSPVLMRHLTASEAKKLPIQEFHLSRILQELGLNQEQFVDLCILLGSDYCES 237
Query: 144 IRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGWLYKEARELFRHPEVADPETIE 201
IRGIGPKRA++LI++H+SIE+I+ +D KY VPE WL+KEA +LF PEV DPE++E
Sbjct: 238 IRGIGPKRAVDLIQKHKSIEEIVRRLDPNKYPVPENWLHKEAHQLFLEPEVLDPESVE 295
Score = 348 (127.6 bits), Expect = 5.3e-49, Sum P(2) = 5.3e-49
Identities = 70/111 (63%), Positives = 88/111 (79%)
Query: 304 ELVADVAPSSIRES-------RKICIDASMSLYQFLIAVRSEGNQLMSVDGEPTSHLMGT 356
+L+ADVAPS+IRE+ RK+ IDASMS+YQFLIAVR G+ L + +GE TSHLMG
Sbjct: 8 KLIADVAPSAIRENDIKSYFGRKVAIDASMSIYQFLIAVRQGGDVLQNEEGETTSHLMGM 67
Query: 357 FYRTIRLVEHGLKPIYVFDGKPPTLKSGELNKRMEKREDAQKALAKAQEQG 407
FYRTIR++E+G+KP+YVFDGKPP LKSGEL KR E+R +A+K L +AQ G
Sbjct: 68 FYRTIRMMENGIKPVYVFDGKPPQLKSGELAKRSERRAEAEKQLQQAQAAG 118
Score = 283 (104.7 bits), Expect = 2.3e-41, Sum P(2) = 2.3e-41
Identities = 48/74 (64%), Positives = 63/74 (85%)
Query: 232 FIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGWLYKEAREL 291
F+DLCILLG DYC+SIRGIGPKRA++LI++H+SIE+I+ +D KY VPE WL+KEA +L
Sbjct: 223 FVDLCILLGSDYCESIRGIGPKRAVDLIQKHKSIEEIVRRLDPNKYPVPENWLHKEAHQL 282
Query: 292 FRHPEIADPETIEL 305
F PE+ DPE++EL
Sbjct: 283 FLEPEVLDPESVEL 296
Score = 187 (70.9 bits), Expect = 9.1e-12, P = 9.1e-12
Identities = 36/77 (46%), Positives = 51/77 (66%)
Query: 3 LKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSSTTQGRLDSFFTIR---REEKR 59
LKWS+P+E+ L+K++CG+K F+E+RIR+G K+L K+R +TQGRLD FF + KR
Sbjct: 296 LKWSEPNEEELIKFMCGEKQFSEERIRSGVKRLSKSRQGSTQGRLDDFFKVTGSLSSAKR 355
Query: 60 KAPCEAEAQCAAMVKAG 76
K P E + K G
Sbjct: 356 KEP-EPKGSTKKKAKTG 371
Score = 180 (68.4 bits), Expect = 2.3e-68, Sum P(2) = 2.3e-68
Identities = 30/55 (54%), Positives = 45/55 (81%)
Query: 405 EQGKLKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSTTTQGRLDSFFTI 459
E +LKWS+P+E+ L+K++CG+K F+E+RIR+G K+L K+R +TQGRLD FF +
Sbjct: 292 ESVELKWSEPNEEELIKFMCGEKQFSEERIRSGVKRLSKSRQGSTQGRLDDFFKV 346
Score = 136 (52.9 bits), Expect = 6.5e-21, Sum P(2) = 6.5e-21
Identities = 56/213 (26%), Positives = 96/213 (45%)
Query: 28 IRNGAKKLLKARSSTTQGRLDSFF-TIRREEKRKAPCEAEAQCAAMVKAGKVYATATEDM 86
+R G L TT + F+ TIR E P +K+G++ +
Sbjct: 46 VRQGGDVLQNEEGETTSHLMGMFYRTIRMMENGIKPVYVFDGKPPQLKSGELAKRSERRA 105
Query: 87 DALTFGSNILLRHMTFSEARKLPVQEFHLEKVLEGMELSHEEFIDLCILLGCDYCDSIRG 146
+A L+ + A + V++F +++++ + ++E L L+G Y D+
Sbjct: 106 EA-----EKQLQQAQAAGAEQ-EVEKF-TKRLVKVTKQHNDECKHLLSLMGIPYLDAPSE 158
Query: 147 IGPKRAIELIKEHRSIEKILENIDTKKYTVPEGWLY---KEAREL----FRHPEVADPET 199
A L+K + E++D + P + EA++L F +
Sbjct: 159 AEASCAA-LVKAGKVYAAATEDMDCLTFGSPVLMRHLTASEAKKLPIQEFHLSRILQELG 217
Query: 200 I---EFIDLCILLGCDYCDSIRGIGPKRAIELL 229
+ +F+DLCILLG DYC+SIRGIGPKRA++L+
Sbjct: 218 LNQEQFVDLCILLGSDYCESIRGIGPKRAVDLI 250
>UNIPROTKB|Q58DH8 [details] [associations]
symbol:FEN1 "Flap endonuclease 1" species:9913 "Bos taurus"
[GO:0005739 "mitochondrion" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0005654 "nucleoplasm" evidence=IEA] [GO:0030145
"manganese ion binding" evidence=IEA] [GO:0004523 "ribonuclease H
activity" evidence=IEA] [GO:0043137 "DNA replication, removal of
RNA primer" evidence=IEA] [GO:0017108 "5'-flap endonuclease
activity" evidence=IEA] [GO:0008409 "5'-3' exonuclease activity"
evidence=IEA] [GO:0006284 "base-excision repair" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0000287 "magnesium ion
binding" evidence=IEA] HAMAP:MF_00614 InterPro:IPR006084
InterPro:IPR006085 InterPro:IPR006086 InterPro:IPR008918
InterPro:IPR019974 InterPro:IPR020045 InterPro:IPR023426
Pfam:PF00752 Pfam:PF00867 PRINTS:PR00853 PROSITE:PS00841
PROSITE:PS00842 SMART:SM00279 SMART:SM00484 SMART:SM00485
GO:GO:0005739 GO:GO:0005654 GO:GO:0005730 GO:GO:0000287
GO:GO:0003677 GO:GO:0006281 GO:GO:0030145 GO:GO:0090305
GO:GO:0004523 GO:GO:0017108 GO:GO:0043137 GO:GO:0008409
eggNOG:COG0258 PANTHER:PTHR11081 SUPFAM:SSF47807 CTD:2237
GeneTree:ENSGT00640000091478 HOGENOM:HOG000193853
HOVERGEN:HBG000844 KO:K04799 OMA:DYDSLLF OrthoDB:EOG415GDQ
EMBL:BT021527 EMBL:BT021540 EMBL:BT021619 EMBL:BT021755
EMBL:BC105255 IPI:IPI00693879 RefSeq:NP_001030285.1
UniGene:Bt.10503 ProteinModelPortal:Q58DH8 SMR:Q58DH8 STRING:Q58DH8
Ensembl:ENSBTAT00000000071 GeneID:616242 KEGG:bta:616242
InParanoid:Q58DH8 NextBio:20900037 Uniprot:Q58DH8
Length = 380
Score = 531 (192.0 bits), Expect = 6.0e-68, Sum P(2) = 6.0e-68
Identities = 94/141 (66%), Positives = 121/141 (85%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVLE 120
AP EAEA CAA+VKAGKVYA ATEDMD LTFGS +L+RH+T SEA+KLP+QEFHL ++L+
Sbjct: 155 APSEAEASCAALVKAGKVYAAATEDMDCLTFGSPVLMRHLTASEAKKLPIQEFHLSRILQ 214
Query: 121 GMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGW 180
+ L+ E+F+DLCILLG DYC+SIRGIGPKRA++LI++H+SIE+I+ +D KY VPE W
Sbjct: 215 ELGLNQEQFVDLCILLGSDYCESIRGIGPKRAVDLIQKHKSIEEIVRRLDPNKYPVPENW 274
Query: 181 LYKEARELFRHPEVADPETIE 201
L+KEA++LF PEV DPE++E
Sbjct: 275 LHKEAQQLFLEPEVLDPESVE 295
Score = 348 (127.6 bits), Expect = 1.1e-48, Sum P(2) = 1.1e-48
Identities = 70/111 (63%), Positives = 88/111 (79%)
Query: 304 ELVADVAPSSIRES-------RKICIDASMSLYQFLIAVRSEGNQLMSVDGEPTSHLMGT 356
+L+ADVAPS+IRE+ RK+ IDASMS+YQFLIAVR G+ L + +GE TSHLMG
Sbjct: 8 KLIADVAPSAIRENDIKSYFGRKVAIDASMSIYQFLIAVRQGGDVLQNEEGETTSHLMGM 67
Query: 357 FYRTIRLVEHGLKPIYVFDGKPPTLKSGELNKRMEKREDAQKALAKAQEQG 407
FYRTIR++E+G+KP+YVFDGKPP LKSGEL KR E+R +A+K L +AQ G
Sbjct: 68 FYRTIRMMENGIKPVYVFDGKPPQLKSGELAKRSERRAEAEKQLQEAQAAG 118
Score = 284 (105.0 bits), Expect = 3.6e-41, Sum P(2) = 3.6e-41
Identities = 48/74 (64%), Positives = 64/74 (86%)
Query: 232 FIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGWLYKEAREL 291
F+DLCILLG DYC+SIRGIGPKRA++LI++H+SIE+I+ +D KY VPE WL+KEA++L
Sbjct: 223 FVDLCILLGSDYCESIRGIGPKRAVDLIQKHKSIEEIVRRLDPNKYPVPENWLHKEAQQL 282
Query: 292 FRHPEIADPETIEL 305
F PE+ DPE++EL
Sbjct: 283 FLEPEVLDPESVEL 296
Score = 184 (69.8 bits), Expect = 2.0e-11, P = 2.0e-11
Identities = 37/76 (48%), Positives = 53/76 (69%)
Query: 3 LKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSSTTQGRLDSFFTIR---REEKR 59
LKWS+P+E+ L+K++CG+K F+E+RIR+G ++L K+R +TQGRLD FF + KR
Sbjct: 296 LKWSEPNEEELIKFMCGEKQFSEERIRSGVRRLSKSRQGSTQGRLDDFFKVTGSLSSAKR 355
Query: 60 KAPCEAEAQCAAMVKA 75
K P E + AA KA
Sbjct: 356 KEP---EPKGAAKKKA 368
Score = 177 (67.4 bits), Expect = 6.0e-68, Sum P(2) = 6.0e-68
Identities = 29/55 (52%), Positives = 45/55 (81%)
Query: 405 EQGKLKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSTTTQGRLDSFFTI 459
E +LKWS+P+E+ L+K++CG+K F+E+RIR+G ++L K+R +TQGRLD FF +
Sbjct: 292 ESVELKWSEPNEEELIKFMCGEKQFSEERIRSGVRRLSKSRQGSTQGRLDDFFKV 346
Score = 137 (53.3 bits), Expect = 1.1e-20, Sum P(2) = 1.1e-20
Identities = 56/213 (26%), Positives = 95/213 (44%)
Query: 28 IRNGAKKLLKARSSTTQGRLDSFF-TIRREEKRKAPCEAEAQCAAMVKAGKVYATATEDM 86
+R G L TT + F+ TIR E P +K+G++ +
Sbjct: 46 VRQGGDVLQNEEGETTSHLMGMFYRTIRMMENGIKPVYVFDGKPPQLKSGELAKRSERRA 105
Query: 87 DALTFGSNILLRHMTFSEARKLPVQEFHLEKVLEGMELSHEEFIDLCILLGCDYCDSIRG 146
+A + +EA V++F +++++ + ++E L L+G Y D+
Sbjct: 106 EA---EKQLQEAQAAGAEAE---VEKF-TKRLVKVTKQHNDECKHLLSLMGIPYLDAPSE 158
Query: 147 IGPKRAIELIKEHRSIEKILENIDTKKYTVPEGWLY---KEAREL----FRHPEVADPET 199
A L+K + E++D + P + EA++L F +
Sbjct: 159 AEASCAA-LVKAGKVYAAATEDMDCLTFGSPVLMRHLTASEAKKLPIQEFHLSRILQELG 217
Query: 200 I---EFIDLCILLGCDYCDSIRGIGPKRAIELL 229
+ +F+DLCILLG DYC+SIRGIGPKRA++L+
Sbjct: 218 LNQEQFVDLCILLGSDYCESIRGIGPKRAVDLI 250
>UNIPROTKB|F1RKS3 [details] [associations]
symbol:FEN1 "Flap endonuclease 1" species:9823 "Sus scrofa"
[GO:0005739 "mitochondrion" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0005654 "nucleoplasm" evidence=IEA] [GO:0030145
"manganese ion binding" evidence=IEA] [GO:0004523 "ribonuclease H
activity" evidence=IEA] [GO:0043137 "DNA replication, removal of
RNA primer" evidence=IEA] [GO:0017108 "5'-flap endonuclease
activity" evidence=IEA] [GO:0008409 "5'-3' exonuclease activity"
evidence=IEA] [GO:0006284 "base-excision repair" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0000287 "magnesium ion
binding" evidence=IEA] HAMAP:MF_00614 InterPro:IPR006084
InterPro:IPR006085 InterPro:IPR006086 InterPro:IPR008918
InterPro:IPR019974 InterPro:IPR020045 InterPro:IPR023426
Pfam:PF00752 Pfam:PF00867 PRINTS:PR00853 PROSITE:PS00841
PROSITE:PS00842 SMART:SM00279 SMART:SM00484 SMART:SM00485
GO:GO:0005739 GO:GO:0005654 GO:GO:0005730 GO:GO:0000287
GO:GO:0006284 GO:GO:0003677 GO:GO:0030145 GO:GO:0090305
GO:GO:0004523 GO:GO:0017108 GO:GO:0043137 GO:GO:0008409
PANTHER:PTHR11081 SUPFAM:SSF47807 GeneTree:ENSGT00640000091478
KO:K04799 OMA:DYDSLLF EMBL:CU914654 RefSeq:XP_003122675.1
Ensembl:ENSSSCT00000030503 GeneID:100517749 KEGG:ssc:100517749
Uniprot:F1RKS3
Length = 380
Score = 531 (192.0 bits), Expect = 6.0e-68, Sum P(2) = 6.0e-68
Identities = 95/141 (67%), Positives = 120/141 (85%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVLE 120
AP EAEA CAA+VKAGKVYA ATEDMD LTFGS +L+RH+T SEA+KLP+QEFHL +VL+
Sbjct: 155 APSEAEASCAALVKAGKVYAAATEDMDCLTFGSPVLMRHLTASEAKKLPIQEFHLSRVLQ 214
Query: 121 GMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGW 180
+ L+ E+F+DLCILLG DYC+SIRGIGPKRA++LI++H+SIE+I+ +D KY VPE W
Sbjct: 215 ELGLNQEQFVDLCILLGSDYCESIRGIGPKRAVDLIQKHKSIEEIVRRLDPNKYPVPENW 274
Query: 181 LYKEARELFRHPEVADPETIE 201
L+KEA++LF PEV DPE +E
Sbjct: 275 LHKEAQQLFLEPEVLDPEAVE 295
Score = 344 (126.2 bits), Expect = 2.9e-48, Sum P(2) = 2.9e-48
Identities = 69/111 (62%), Positives = 87/111 (78%)
Query: 304 ELVADVAPSSIRES-------RKICIDASMSLYQFLIAVRSEGNQLMSVDGEPTSHLMGT 356
+L+ADVAP +IRE+ RK+ IDASMS+YQFLIAVR G+ L + +GE TSHLMG
Sbjct: 8 KLIADVAPGAIRENDIKSYFGRKVAIDASMSIYQFLIAVRQGGDVLQNEEGETTSHLMGM 67
Query: 357 FYRTIRLVEHGLKPIYVFDGKPPTLKSGELNKRMEKREDAQKALAKAQEQG 407
FYRTIR++E+G+KP+YVFDGKPP LKSGEL KR E+R +A+K L +AQ G
Sbjct: 68 FYRTIRMMENGIKPVYVFDGKPPQLKSGELAKRSERRAEAEKQLQQAQAAG 118
Score = 283 (104.7 bits), Expect = 4.7e-41, Sum P(2) = 4.7e-41
Identities = 48/74 (64%), Positives = 63/74 (85%)
Query: 232 FIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGWLYKEAREL 291
F+DLCILLG DYC+SIRGIGPKRA++LI++H+SIE+I+ +D KY VPE WL+KEA++L
Sbjct: 223 FVDLCILLGSDYCESIRGIGPKRAVDLIQKHKSIEEIVRRLDPNKYPVPENWLHKEAQQL 282
Query: 292 FRHPEIADPETIEL 305
F PE+ DPE +EL
Sbjct: 283 FLEPEVLDPEAVEL 296
Score = 186 (70.5 bits), Expect = 1.2e-11, P = 1.2e-11
Identities = 36/77 (46%), Positives = 51/77 (66%)
Query: 3 LKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSSTTQGRLDSFFTIR---REEKR 59
LKWS+P+E+ LVK++CG+K F+E+RIR+G ++L K+R +TQGRLD FF + KR
Sbjct: 296 LKWSEPNEEELVKFMCGEKQFSEERIRSGVRRLSKSRQGSTQGRLDDFFKVTGSLSSAKR 355
Query: 60 KAPCEAEAQCAAMVKAG 76
K P E + K G
Sbjct: 356 KEP-EPKGSAKKKAKTG 371
Score = 177 (67.4 bits), Expect = 6.0e-68, Sum P(2) = 6.0e-68
Identities = 30/55 (54%), Positives = 45/55 (81%)
Query: 405 EQGKLKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSTTTQGRLDSFFTI 459
E +LKWS+P+E+ LVK++CG+K F+E+RIR+G ++L K+R +TQGRLD FF +
Sbjct: 292 EAVELKWSEPNEEELVKFMCGEKQFSEERIRSGVRRLSKSRQGSTQGRLDDFFKV 346
Score = 135 (52.6 bits), Expect = 1.8e-20, Sum P(2) = 1.8e-20
Identities = 57/213 (26%), Positives = 96/213 (45%)
Query: 28 IRNGAKKLLKARSSTTQGRLDSFF-TIRREEKRKAPCEAEAQCAAMVKAGKVYATATEDM 86
+R G L TT + F+ TIR E P +K+G++ +
Sbjct: 46 VRQGGDVLQNEEGETTSHLMGMFYRTIRMMENGIKPVYVFDGKPPQLKSGELAKRSERRA 105
Query: 87 DALTFGSNILLRHMTFSEARKLPVQEFHLEKVLEGMELSHEEFIDLCILLGCDYCDSIRG 146
+A L+ + A + V++F +++++ + ++E L L+G Y D+
Sbjct: 106 EA-----EKQLQQAQAAGAGE-EVEKF-TKRLVKVTKQHNDECKHLLSLMGVPYLDAPSE 158
Query: 147 IGPKRAIELIKEHRSIEKILENIDTKKYTVPEGWLY---KEAREL----FRHPEVADPET 199
A L+K + E++D + P + EA++L F V
Sbjct: 159 AEASCAA-LVKAGKVYAAATEDMDCLTFGSPVLMRHLTASEAKKLPIQEFHLSRVLQELG 217
Query: 200 I---EFIDLCILLGCDYCDSIRGIGPKRAIELL 229
+ +F+DLCILLG DYC+SIRGIGPKRA++L+
Sbjct: 218 LNQEQFVDLCILLGSDYCESIRGIGPKRAVDLI 250
>MGI|MGI:102779 [details] [associations]
symbol:Fen1 "flap structure specific endonuclease 1"
species:10090 "Mus musculus" [GO:0000287 "magnesium ion binding"
evidence=IDA] [GO:0003677 "DNA binding" evidence=ISO;IDA]
[GO:0003824 "catalytic activity" evidence=IEA] [GO:0004518
"nuclease activity" evidence=IEA] [GO:0004519 "endonuclease
activity" evidence=IEA] [GO:0004523 "ribonuclease H activity"
evidence=ISO] [GO:0004527 "exonuclease activity" evidence=IDA]
[GO:0005634 "nucleus" evidence=ISO;TAS] [GO:0005739 "mitochondrion"
evidence=ISO] [GO:0006260 "DNA replication" evidence=IMP]
[GO:0006281 "DNA repair" evidence=IMP] [GO:0006974 "response to DNA
damage stimulus" evidence=IEA] [GO:0007613 "memory" evidence=ISO]
[GO:0008409 "5'-3' exonuclease activity" evidence=ISO] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0016788 "hydrolase activity,
acting on ester bonds" evidence=IEA] [GO:0017108 "5'-flap
endonuclease activity" evidence=ISO] [GO:0030145 "manganese ion
binding" evidence=IDA] [GO:0043137 "DNA replication, removal of RNA
primer" evidence=ISO] [GO:0046872 "metal ion binding" evidence=IEA]
[GO:0048256 "flap endonuclease activity" evidence=IDA]
HAMAP:MF_00614 InterPro:IPR006084 InterPro:IPR006085
InterPro:IPR006086 InterPro:IPR008918 InterPro:IPR019974
InterPro:IPR020045 InterPro:IPR023426 Pfam:PF00752 Pfam:PF00867
PRINTS:PR00853 PROSITE:PS00841 PROSITE:PS00842 SMART:SM00279
SMART:SM00484 SMART:SM00485 MGI:MGI:102779 GO:GO:0005739
GO:GO:0005634 GO:GO:0005654 GO:GO:0005730 GO:GO:0000287
GO:GO:0003677 GO:GO:0006260 GO:GO:0006281 GO:GO:0030145
GO:GO:0004527 eggNOG:COG0258 PANTHER:PTHR11081 SUPFAM:SSF47807
GO:GO:0048256 HOVERGEN:HBG000844 OrthoDB:EOG415GDQ ChiTaRS:FEN1
EMBL:L26320 IPI:IPI00990732 PIR:A53730 UniGene:Mm.2952
ProteinModelPortal:P39749 SMR:P39749 STRING:P39749 PaxDb:P39749
PRIDE:P39749 InParanoid:P39749 CleanEx:MM_FEN1
Genevestigator:P39749 GermOnline:ENSMUSG00000024742 Uniprot:P39749
Length = 378
Score = 521 (188.5 bits), Expect = 2.6e-67, Sum P(2) = 2.6e-67
Identities = 93/141 (65%), Positives = 119/141 (84%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVLE 120
AP EAEA CAA+ KAGKVYA ATEDMD LTFGS +L+RH+T SEA+KLP+QEFHL +VL+
Sbjct: 153 APSEAEASCAALAKAGKVYAAATEDMDCLTFGSPVLMRHLTASEAKKLPIQEFHLSRVLQ 212
Query: 121 GMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGW 180
+ L+ E+F+DLCILLG DYC+SIRGIG KRA++LI++H+SIE+I+ +D KY VPE W
Sbjct: 213 ELGLNQEQFVDLCILLGSDYCESIRGIGAKRAVDLIQKHKSIEEIVRRLDPSKYPVPENW 272
Query: 181 LYKEARELFRHPEVADPETIE 201
L+KEA++LF PEV DPE++E
Sbjct: 273 LHKEAQQLFLEPEVVDPESVE 293
Score = 327 (120.2 bits), Expect = 6.8e-47, Sum P(2) = 6.8e-47
Identities = 70/111 (63%), Positives = 87/111 (78%)
Query: 304 ELVADVAPSSIRES-------RKICIDASMSLYQFLIAVRSEGNQLMSVDGEPTSHLMGT 356
+L+ADVAPS+IRE+ RK+ IDASMS+YQFLIAVR G+ L + +GE TS LMG
Sbjct: 8 KLIADVAPSAIRENDIKSYFGRKVAIDASMSIYQFLIAVRQGGDVLQNEEGETTS-LMGM 66
Query: 357 FYRTIRLVEHGLKPIYVFDGKPPTLKSGELNKRMEKREDAQKALAKAQEQG 407
FYRTIR+ E+G+KP+YVFDGKPP LKSGEL KR E+R +A+K L +AQE G
Sbjct: 67 FYRTIRM-ENGIKPVYVFDGKPPQLKSGELAKRSERRAEAEKQLQQAQEAG 116
Score = 277 (102.6 bits), Expect = 3.6e-40, Sum P(2) = 3.6e-40
Identities = 47/74 (63%), Positives = 63/74 (85%)
Query: 232 FIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGWLYKEAREL 291
F+DLCILLG DYC+SIRGIG KRA++LI++H+SIE+I+ +D KY VPE WL+KEA++L
Sbjct: 221 FVDLCILLGSDYCESIRGIGAKRAVDLIQKHKSIEEIVRRLDPSKYPVPENWLHKEAQQL 280
Query: 292 FRHPEIADPETIEL 305
F PE+ DPE++EL
Sbjct: 281 FLEPEVVDPESVEL 294
Score = 188 (71.2 bits), Expect = 6.9e-12, P = 6.9e-12
Identities = 37/77 (48%), Positives = 51/77 (66%)
Query: 3 LKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSSTTQGRLDSFFTIR---REEKR 59
LKWS+P+E+ LVK++CG+K F+E+RIR+G K+L K+R +TQGRLD FF + KR
Sbjct: 294 LKWSEPNEEELVKFMCGEKQFSEERIRSGVKRLSKSRQGSTQGRLDDFFKVTGSLSSAKR 353
Query: 60 KAPCEAEAQCAAMVKAG 76
K P E + K G
Sbjct: 354 KEP-EPKGPAKKKAKTG 369
Score = 181 (68.8 bits), Expect = 2.6e-67, Sum P(2) = 2.6e-67
Identities = 31/55 (56%), Positives = 45/55 (81%)
Query: 405 EQGKLKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSTTTQGRLDSFFTI 459
E +LKWS+P+E+ LVK++CG+K F+E+RIR+G K+L K+R +TQGRLD FF +
Sbjct: 290 ESVELKWSEPNEEELVKFMCGEKQFSEERIRSGVKRLSKSRQGSTQGRLDDFFKV 344
Score = 126 (49.4 bits), Expect = 5.2e-20, Sum P(2) = 5.2e-20
Identities = 28/60 (46%), Positives = 39/60 (65%)
Query: 170 DTKKYTVPEGWLYKEARELFRHPEVADPETIEFIDLCILLGCDYCDSIRGIGPKRAIELL 229
+ KK + E L + +EL + E +F+DLCILLG DYC+SIRGIG KRA++L+
Sbjct: 196 EAKKLPIQEFHLSRVLQELGLNQE-------QFVDLCILLGSDYCESIRGIGAKRAVDLI 248
>WB|WBGene00000794 [details] [associations]
symbol:crn-1 species:6239 "Caenorhabditis elegans"
[GO:0006281 "DNA repair" evidence=IEA;TAS] [GO:0004518 "nuclease
activity" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003824 "catalytic activity" evidence=IEA] [GO:0016788
"hydrolase activity, acting on ester bonds" evidence=IEA]
[GO:0009792 "embryo development ending in birth or egg hatching"
evidence=IMP] [GO:0009790 "embryo development" evidence=IMP]
[GO:0001703 "gastrulation with mouth forming first" evidence=IMP]
[GO:0002009 "morphogenesis of an epithelium" evidence=IMP]
[GO:0040011 "locomotion" evidence=IMP] [GO:0040035 "hermaphrodite
genitalia development" evidence=IMP] [GO:0040010 "positive
regulation of growth rate" evidence=IMP] [GO:0000003 "reproduction"
evidence=IMP] [GO:0006898 "receptor-mediated endocytosis"
evidence=IMP] [GO:0006915 "apoptotic process" evidence=IMP]
[GO:0006309 "apoptotic DNA fragmentation" evidence=IGI;IDA]
[GO:0006260 "DNA replication" evidence=TAS] [GO:0005634 "nucleus"
evidence=IDA] [GO:0048256 "flap endonuclease activity"
evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
HAMAP:MF_00614 InterPro:IPR006084 InterPro:IPR006085
InterPro:IPR006086 InterPro:IPR008918 InterPro:IPR019974
InterPro:IPR020045 InterPro:IPR023426 Pfam:PF00752 Pfam:PF00867
PRINTS:PR00853 PROSITE:PS00841 PROSITE:PS00842 SMART:SM00279
SMART:SM00484 SMART:SM00485 GO:GO:0005739 GO:GO:0005634
GO:GO:0009792 GO:GO:0002009 GO:GO:0006898 GO:GO:0040010
GO:GO:0005654 GO:GO:0005730 GO:GO:0046872 GO:GO:0003677
GO:GO:0006260 GO:GO:0006281 GO:GO:0040011 GO:GO:0040035
GO:GO:0004527 GO:GO:0006309 eggNOG:COG0258 PANTHER:PTHR11081
SUPFAM:SSF47807 GO:GO:0001703 GO:GO:0048256
GeneTree:ENSGT00640000091478 HOGENOM:HOG000193853 KO:K04799
OMA:DYDSLLF EMBL:AY303575 EMBL:FO081580 RefSeq:NP_491168.1
UniGene:Cel.6649 HSSP:O29975 ProteinModelPortal:Q9N3T2 SMR:Q9N3T2
DIP:DIP-26974N IntAct:Q9N3T2 MINT:MINT-226245 STRING:Q9N3T2
PaxDb:Q9N3T2 EnsemblMetazoa:Y47G6A.8 GeneID:171917
KEGG:cel:CELE_Y47G6A.8 UCSC:Y47G6A.8 CTD:171917 WormBase:Y47G6A.8
InParanoid:Q9N3T2 NextBio:873233 Uniprot:Q9N3T2
Length = 382
Score = 517 (187.1 bits), Expect = 2.3e-64, Sum P(2) = 2.3e-64
Identities = 95/142 (66%), Positives = 115/142 (80%)
Query: 60 KAPCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVL 119
+APCEAEAQCA +VKAGKV+ T TEDMDALTFGS +LLRH A+K+P++EF+L L
Sbjct: 154 EAPCEAEAQCAHLVKAGKVFGTVTEDMDALTFGSTVLLRHFLAPVAKKIPIKEFNLSLAL 213
Query: 120 EGMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEG 179
E M+LS EEFIDLCILLGCDYC +IRG+GPK+A+ELI++H++IE ILENID KY PE
Sbjct: 214 EEMKLSVEEFIDLCILLGCDYCGTIRGVGPKKAVELIRQHKNIETILENIDQNKYPPPED 273
Query: 180 WLYKEARELFRHPEVADPETIE 201
W YK ARELF +PEV PE +E
Sbjct: 274 WPYKRARELFLNPEVTKPEEVE 295
Score = 340 (124.7 bits), Expect = 6.9e-31, P = 6.9e-31
Identities = 69/125 (55%), Positives = 93/125 (74%)
Query: 304 ELVADVAPSSIRES-------RKICIDASMSLYQFLIAVRSEGNQLMSVDGEPTSHLMGT 356
+++AD APS+I+ + R + IDASM LYQFLIAVR +G+QL S DGE TSHLMG
Sbjct: 8 QVIADNAPSAIKVNEMKAFFGRTVAIDASMCLYQFLIAVRQDGSQLQSEDGETTSHLMGM 67
Query: 357 FYRTIRLVEHGLKPIYVFDGKPPTLKSGELNKRMEKREDAQKALAKAQEQGKLKWSDPDE 416
RT+R+ E+G+KP+YVFDGKPP +K GEL KR E+R +A+KAL +A+E+G +K ++ E
Sbjct: 68 LNRTVRMFENGVKPVYVFDGKPPDMKGGELEKRSERRAEAEKALTEAKEKGDVKEAEKFE 127
Query: 417 DGLVK 421
LVK
Sbjct: 128 RRLVK 132
Score = 288 (106.4 bits), Expect = 1.5e-39, Sum P(2) = 1.5e-39
Identities = 53/81 (65%), Positives = 64/81 (79%)
Query: 232 FIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGWLYKEAREL 291
FIDLCILLGCDYC +IRG+GPK+A+ELI++H++IE ILENID KY PE W YK AREL
Sbjct: 223 FIDLCILLGCDYCGTIRGVGPKKAVELIRQHKNIETILENIDQNKYPPPEDWPYKRAREL 282
Query: 292 FRHPEIADPETIELV---ADV 309
F +PE+ PE +EL ADV
Sbjct: 283 FLNPEVTKPEEVELTWKEADV 303
Score = 157 (60.3 bits), Expect = 2.3e-64, Sum P(2) = 2.3e-64
Identities = 27/53 (50%), Positives = 40/53 (75%)
Query: 405 EQGKLKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSTTTQGRLDSFF 457
E+ +L W + D +G++++LCG+KNF E+RIRN KL +R + TQGR+DSFF
Sbjct: 292 EEVELTWKEADVEGVIQFLCGEKNFNEERIRNALAKLKTSRKSGTQGRIDSFF 344
Score = 157 (60.3 bits), Expect = 2.2e-08, P = 2.2e-08
Identities = 36/81 (44%), Positives = 47/81 (58%)
Query: 3 LKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSSTTQGRLDSFF-------TIRR 55
L W + D +G++++LCG+KNF E+RIRN KL +R S TQGR+DSFF +
Sbjct: 296 LTWKEADVEGVIQFLCGEKNFNEERIRNALAKLKTSRKSGTQGRIDSFFGNSTKVTCVTA 355
Query: 56 EEKRKAPCEAEAQCAAMVKAG 76
KRKA EAE K G
Sbjct: 356 ATKRKAE-EAEKAKKGAKKGG 375
Score = 139 (54.0 bits), Expect = 1.6e-18, Sum P(2) = 1.6e-18
Identities = 23/29 (79%), Positives = 28/29 (96%)
Query: 201 EFIDLCILLGCDYCDSIRGIGPKRAIELL 229
EFIDLCILLGCDYC +IRG+GPK+A+EL+
Sbjct: 222 EFIDLCILLGCDYCGTIRGVGPKKAVELI 250
>POMBASE|SPAC3G6.06c [details] [associations]
symbol:rad2 "FEN-1 endonuclease Rad2" species:4896
"Schizosaccharomyces pombe" [GO:0000287 "magnesium ion binding"
evidence=IEA] [GO:0000723 "telomere maintenance" evidence=IMP]
[GO:0000731 "DNA synthesis involved in DNA repair" evidence=TAS]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005515 "protein
binding" evidence=IPI] [GO:0005634 "nucleus" evidence=IC;IDA]
[GO:0005654 "nucleoplasm" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0005739 "mitochondrion" evidence=IEA] [GO:0006284
"base-excision repair" evidence=IEA] [GO:0017108 "5'-flap
endonuclease activity" evidence=ISO] [GO:0043137 "DNA replication,
removal of RNA primer" evidence=IGI] [GO:0043596 "nuclear
replication fork" evidence=IC] [GO:0045145 "single-stranded DNA
specific 5'-3' exodeoxyribonuclease activity" evidence=IDA]
HAMAP:MF_00614 InterPro:IPR006084 InterPro:IPR006085
InterPro:IPR006086 InterPro:IPR008918 InterPro:IPR019974
InterPro:IPR020045 InterPro:IPR023426 Pfam:PF00752 Pfam:PF00867
PRINTS:PR00853 PROSITE:PS00841 PROSITE:PS00842 SMART:SM00279
SMART:SM00484 SMART:SM00485 PomBase:SPAC3G6.06c GO:GO:0005739
GO:GO:0005654 EMBL:CU329670 GO:GO:0005730 GenomeReviews:CU329670_GR
GO:GO:0046872 GO:GO:0003677 GO:GO:0043596 GO:GO:0000723
GO:GO:0000731 GO:GO:0017108 GO:GO:0043137 eggNOG:COG0258
PANTHER:PTHR11081 SUPFAM:SSF47807 GO:GO:0045145
HOGENOM:HOG000193853 KO:K04799 OMA:DYDSLLF OrthoDB:EOG41VPBP
EMBL:X77041 PIR:A56054 RefSeq:NP_594972.1 ProteinModelPortal:P39750
STRING:P39750 EnsemblFungi:SPAC3G6.06c.1 GeneID:2543164
KEGG:spo:SPAC3G6.06c NextBio:20804190 Uniprot:P39750
Length = 380
Score = 457 (165.9 bits), Expect = 9.9e-58, Sum P(2) = 9.9e-58
Identities = 79/141 (56%), Positives = 110/141 (78%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVLE 120
APCEAEAQCAA+ ++GKVYA A+EDMD L F + +LLRH+TFSE RK P+ E+++EK L
Sbjct: 156 APCEAEAQCAALARSGKVYAAASEDMDTLCFQAPVLLRHLTFSEQRKEPISEYNIEKALN 215
Query: 121 GMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGW 180
G+++S E+F+DLCILLGCDYC+ IRG+GP RA+ELI+++ ++++ ++ D KY +PE W
Sbjct: 216 GLDMSVEQFVDLCILLGCDYCEPIRGVGPARAVELIRQYGTLDRFVKEADRSKYPIPEDW 275
Query: 181 LYKEARELFRHPEVADPETIE 201
Y++AR LF EV E IE
Sbjct: 276 PYEDARRLFLDAEVLPGEEIE 296
Score = 300 (110.7 bits), Expect = 2.2e-26, P = 2.2e-26
Identities = 61/118 (51%), Positives = 87/118 (73%)
Query: 304 ELVADVAPSSIRES-------RKICIDASMSLYQFLIAVRSE-GNQLMSVDGEPTSHLMG 355
+++++ AP+S++ + RK+ IDASMSLYQFLI VRS+ G QLM+ GE TSHLMG
Sbjct: 8 QVLSEHAPASVKHNDIKNYFGRKVAIDASMSLYQFLIQVRSQDGQQLMNEQGETTSHLMG 67
Query: 356 TFYRTIRLVEHGLKPIYVFDGKPPTLKSGELNKRMEKREDAQKALAKAQEQGKLKWSD 413
FYRT+R+V++G+KP +VFDGKPPTLKSGEL KR+ + + A++ + +E G + D
Sbjct: 68 MFYRTLRIVDNGIKPCFVFDGKPPTLKSGELAKRVARHQKAREDQEETKEVGTAEMVD 125
Score = 229 (85.7 bits), Expect = 1.3e-16, P = 1.3e-16
Identities = 38/74 (51%), Positives = 55/74 (74%)
Query: 232 FIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGWLYKEAREL 291
F+DLCILLGCDYC+ IRG+GP RA+ELI+++ ++++ ++ D KY +PE W Y++AR L
Sbjct: 224 FVDLCILLGCDYCEPIRGVGPARAVELIRQYGTLDRFVKEADRSKYPIPEDWPYEDARRL 283
Query: 292 FRHPEIADPETIEL 305
F E+ E IEL
Sbjct: 284 FLDAEVLPGEEIEL 297
Score = 154 (59.3 bits), Expect = 9.9e-58, Sum P(2) = 9.9e-58
Identities = 31/68 (45%), Positives = 44/68 (64%)
Query: 394 EDAQKALAKAQ----EQGKLKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSTTT 449
EDA++ A+ E+ +LKW PD DG++++L +K F EDR++ G +L KA T
Sbjct: 278 EDARRLFLDAEVLPGEEIELKWKSPDADGIIQFLVKEKGFNEDRVKLGINRLEKASKTIP 337
Query: 450 QGRLDSFF 457
QGRLDSFF
Sbjct: 338 QGRLDSFF 345
Score = 142 (55.0 bits), Expect = 1.0e-06, P = 1.0e-06
Identities = 29/72 (40%), Positives = 44/72 (61%)
Query: 3 LKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSSTTQGRLDSFFTIRREEKRKAP 62
LKW PD DG++++L +K F EDR++ G +L KA + QGRLDSFF +K P
Sbjct: 297 LKWKSPDADGIIQFLVKEKGFNEDRVKLGINRLEKASKTIPQGRLDSFFKPVPSSPKK-P 355
Query: 63 CEAEAQCAAMVK 74
+ +++ +A K
Sbjct: 356 VDTKSKGSAKRK 367
Score = 136 (52.9 bits), Expect = 6.9e-18, Sum P(2) = 6.9e-18
Identities = 24/41 (58%), Positives = 31/41 (75%)
Query: 196 DPETIEFIDLCILLGCDYCDSIRGIGPKRAIELL--YSFID 234
D +F+DLCILLGCDYC+ IRG+GP RA+EL+ Y +D
Sbjct: 218 DMSVEQFVDLCILLGCDYCEPIRGVGPARAVELIRQYGTLD 258
>DICTYBASE|DDB_G0284987 [details] [associations]
symbol:repG "XPG" species:44689 "Dictyostelium
discoideum" [GO:0090305 "nucleic acid phosphodiester bond
hydrolysis" evidence=IEA] [GO:0016788 "hydrolase activity, acting
on ester bonds" evidence=IEA] [GO:0006281 "DNA repair"
evidence=IEA;ISS] [GO:0004518 "nuclease activity" evidence=IEA]
[GO:0003824 "catalytic activity" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA;ISS] [GO:0043137 "DNA replication, removal of
RNA primer" evidence=IEA] [GO:0017108 "5'-flap endonuclease
activity" evidence=IEA] [GO:0008409 "5'-3' exonuclease activity"
evidence=IEA] [GO:0006284 "base-excision repair" evidence=IEA]
[GO:0005739 "mitochondrion" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA;ISS] [GO:0000287 "magnesium ion binding"
evidence=IEA;ISS] [GO:0048256 "flap endonuclease activity"
evidence=ISS] [GO:0030145 "manganese ion binding" evidence=ISS]
[GO:0006260 "DNA replication" evidence=IEA;ISS] [GO:0004527
"exonuclease activity" evidence=IEA;ISS] [GO:0046872 "metal ion
binding" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0006974 "response to DNA damage stimulus"
evidence=IEA] [GO:0004519 "endonuclease activity" evidence=IEA]
[GO:0005730 "nucleolus" evidence=IEA] [GO:0005654 "nucleoplasm"
evidence=IEA] HAMAP:MF_00614 InterPro:IPR006084 InterPro:IPR006085
InterPro:IPR006086 InterPro:IPR008918 InterPro:IPR019974
InterPro:IPR020045 InterPro:IPR023426 Pfam:PF00752 Pfam:PF00867
PRINTS:PR00853 PROSITE:PS00841 PROSITE:PS00842 SMART:SM00279
SMART:SM00484 SMART:SM00485 dictyBase:DDB_G0284987 GO:GO:0005739
GO:GO:0005634 GO:GO:0005654 GO:GO:0005730 GenomeReviews:CM000153_GR
GO:GO:0000287 GO:GO:0003677 GO:GO:0006260 GO:GO:0006281
EMBL:AAFI02000073 GO:GO:0030145 GO:GO:0004527 eggNOG:COG0258
PANTHER:PTHR11081 SUPFAM:SSF47807 GO:GO:0048256 KO:K04799
OMA:DYDSLLF RefSeq:XP_639977.1 ProteinModelPortal:Q54NU0
STRING:Q54NU0 EnsemblProtists:DDB0231109 GeneID:8624889
KEGG:ddi:DDB_G0284987 InParanoid:Q54NU0 ProtClustDB:PTZ00217
Uniprot:Q54NU0
Length = 384
Score = 474 (171.9 bits), Expect = 2.9e-56, Sum P(2) = 2.9e-56
Identities = 85/135 (62%), Positives = 113/135 (83%)
Query: 60 KAPCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVL 119
KAPCEAEAQCA +VK GK +AT +EDMD+LT GS +LLR + FSEA+K+P+ EF L+ VL
Sbjct: 155 KAPCEAEAQCAEIVKKGKAWATGSEDMDSLTLGSTVLLRRLFFSEAKKMPILEFELQSVL 214
Query: 120 EGMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEG 179
EG+ L+ +EFIDL ILLGCDYCDSI+GIGPKRAIELI++H+S+E++++++D KY +PE
Sbjct: 215 EGLGLTQDEFIDLSILLGCDYCDSIKGIGPKRAIELIQKHKSLEEVIKHLDKSKYPLPEF 274
Query: 180 WLYKEARELFRHPEV 194
+ Y E RELF++P V
Sbjct: 275 FPYPEVRELFKNPNV 289
Score = 262 (97.3 bits), Expect = 4.4e-30, Sum P(2) = 4.4e-30
Identities = 58/112 (51%), Positives = 77/112 (68%)
Query: 304 ELVADVAPSSIRES-------RKICIDASMSLYQFLIAVRSE-GNQLMSVDGEPTSHLMG 355
+L+ D AP+SI+ + R I IDAS SLYQFLIA+ ++ + L + GE TSHL G
Sbjct: 8 DLIEDNAPTSIKTNILKNYFGRIIAIDASTSLYQFLIAMNADVSSALTNQLGETTSHLQG 67
Query: 356 TFYRTIRLVEHGLKPIYVFDGKPPTLKSGELNKRMEKREDAQKALAKAQEQG 407
FYRTI+L+ G+KPIYVFDG P LKSGEL KR +R++A++ L +A E G
Sbjct: 68 MFYRTIKLISRGIKPIYVFDGSAPVLKSGELAKRQARRKEAKENLKEATEVG 119
Score = 239 (89.2 bits), Expect = 8.4e-27, Sum P(2) = 8.4e-27
Identities = 41/66 (62%), Positives = 57/66 (86%)
Query: 232 FIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGWLYKEAREL 291
FIDL ILLGCDYCDSI+GIGPKRAIELI++H+S+E++++++D KY +PE + Y E REL
Sbjct: 224 FIDLSILLGCDYCDSIKGIGPKRAIELIQKHKSLEEVIKHLDKSKYPLPEFFPYPEVREL 283
Query: 292 FRHPEI 297
F++P +
Sbjct: 284 FKNPNV 289
Score = 141 (54.7 bits), Expect = 5.0e-15, Sum P(2) = 5.0e-15
Identities = 26/29 (89%), Positives = 28/29 (96%)
Query: 201 EFIDLCILLGCDYCDSIRGIGPKRAIELL 229
EFIDL ILLGCDYCDSI+GIGPKRAIEL+
Sbjct: 223 EFIDLSILLGCDYCDSIKGIGPKRAIELI 251
Score = 123 (48.4 bits), Expect = 2.9e-56, Sum P(2) = 2.9e-56
Identities = 22/57 (38%), Positives = 36/57 (63%)
Query: 403 AQEQGKLKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSTTTQGRLDSFFTI 459
A + +W DPD +GL K+L + F++ R+ G +KL K ++T+ Q R+DSF T+
Sbjct: 292 ADQLPPFQWKDPDVEGLNKFLVEEMGFSDVRVAQGIEKLKKFKNTSVQSRMDSFITV 348
Score = 118 (46.6 bits), Expect = 0.00048, P = 0.00048
Identities = 20/50 (40%), Positives = 34/50 (68%)
Query: 4 KWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSSTTQGRLDSFFTI 53
+W DPD +GL K+L + F++ R+ G +KL K ++++ Q R+DSF T+
Sbjct: 299 QWKDPDVEGLNKFLVEEMGFSDVRVAQGIEKLKKFKNTSVQSRMDSFITV 348
>CGD|CAL0000208 [details] [associations]
symbol:orf19.547 species:5476 "Candida albicans" [GO:0005634
"nucleus" evidence=IEA] [GO:0005739 "mitochondrion" evidence=IEA]
[GO:0017108 "5'-flap endonuclease activity" evidence=IEA]
[GO:0045145 "single-stranded DNA specific 5'-3'
exodeoxyribonuclease activity" evidence=IEA] [GO:0001302
"replicative cell aging" evidence=IEA] [GO:0006286 "base-excision
repair, base-free sugar-phosphate removal" evidence=IEA]
[GO:0000734 "gene conversion at mating-type locus, DNA repair
synthesis" evidence=IEA] [GO:0006303 "double-strand break repair
via nonhomologous end joining" evidence=IEA] [GO:0043137 "DNA
replication, removal of RNA primer" evidence=IEA] [GO:0000723
"telomere maintenance" evidence=IEA] HAMAP:MF_00614
InterPro:IPR006084 InterPro:IPR006085 InterPro:IPR006086
InterPro:IPR008918 InterPro:IPR019974 InterPro:IPR020045
InterPro:IPR023426 Pfam:PF00752 Pfam:PF00867 PRINTS:PR00853
PROSITE:PS00841 PROSITE:PS00842 SMART:SM00279 SMART:SM00484
SMART:SM00485 CGD:CAL0000208 GO:GO:0005739 GO:GO:0005654
GO:GO:0005730 GO:GO:0046872 GO:GO:0003677 GO:GO:0006260
GO:GO:0006281 GO:GO:0004527 GO:GO:0090305 GO:GO:0004519
EMBL:AACQ01000055 EMBL:AACQ01000054 eggNOG:COG0258
PANTHER:PTHR11081 SUPFAM:SSF47807 KO:K04799 RefSeq:XP_717410.1
RefSeq:XP_717504.1 ProteinModelPortal:Q5A6K8 STRING:Q5A6K8
GeneID:3640904 GeneID:3640946 KEGG:cal:CaO19.547
KEGG:cal:CaO19.8182 Uniprot:Q5A6K8
Length = 372
Score = 430 (156.4 bits), Expect = 3.3e-55, Sum P(2) = 3.3e-55
Identities = 79/142 (55%), Positives = 104/142 (73%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVLE 120
APCEAEAQCA + + GKVYA A+EDMD L + LLRH+TFSEARK+P+ + + +
Sbjct: 156 APCEAEAQCAELARGGKVYAAASEDMDTLCYEPPFLLRHLTFSEARKMPIDQIEYKDAIA 215
Query: 121 GMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKK--YTVPE 178
G++++ E+FIDLCILLGCDYC+SI+GIG A +LIKEH S++ I+E I K YT+PE
Sbjct: 216 GLDMTKEQFIDLCILLGCDYCESIKGIGQATAFKLIKEHGSLDNIVEWIKNNKTKYTLPE 275
Query: 179 GWLYKEARELFRHPEVADPETI 200
W Y EAR+LF +PEV + I
Sbjct: 276 NWPYDEARQLFMNPEVTNASEI 297
Score = 305 (112.4 bits), Expect = 1.2e-41, Sum P(2) = 1.2e-41
Identities = 62/115 (53%), Positives = 83/115 (72%)
Query: 304 ELVADVAPSSIRE-------SRKICIDASMSLYQFLIAVR-SEGNQLMSVDGEPTSHLMG 355
+L+ + +PS+ +E RK+ IDASM LYQFLIAVR S+G QL + DGE TSHL G
Sbjct: 8 QLIKEHSPSAYKEFQLKNLFGRKVAIDASMCLYQFLIAVRQSDGQQLTNEDGETTSHLSG 67
Query: 356 TFYRTIRLVEHGLKPIYVFDGKPPTLKSGELNKRMEKREDAQKALAKAQEQGKLK 410
FYRTI++VE+ +KP+YVFDGKPP LK GEL KR+ +RE+AQK ++G ++
Sbjct: 68 MFYRTIKMVENNIKPVYVFDGKPPVLKGGELEKRLLRREEAQKQKTALGDEGTVE 122
Score = 234 (87.4 bits), Expect = 6.8e-30, Sum P(2) = 6.8e-30
Identities = 48/96 (50%), Positives = 63/96 (65%)
Query: 212 DYCDSIRGIGPKRAIELLYSFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILEN 271
+Y D+I G+ + FIDLCILLGCDYC+SI+GIG A +LIKEH S++ I+E
Sbjct: 209 EYKDAIAGLDMTKE-----QFIDLCILLGCDYCESIKGIGQATAFKLIKEHGSLDNIVEW 263
Query: 272 IDTKK--YTVPEGWLYKEARELFRHPEIADPETIEL 305
I K YT+PE W Y EAR+LF +PE+ + I L
Sbjct: 264 IKNNKTKYTLPENWPYDEARQLFMNPEVTNASEINL 299
Score = 169 (64.5 bits), Expect = 9.2e-10, P = 9.2e-10
Identities = 34/70 (48%), Positives = 49/70 (70%)
Query: 1 MTLKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSSTTQGRLDSFFTIRR--EEK 58
+ LKW +PD DGL++++ K F+EDRIR+GA+KL K QGRLD FF + + ++K
Sbjct: 297 INLKWKEPDVDGLIEFMVKQKGFSEDRIRSGAEKLKKGLKGGVQGRLDGFFKVVKTDDKK 356
Query: 59 RKA-PCEAEA 67
RKA P E++A
Sbjct: 357 RKADPKESKA 366
Score = 157 (60.3 bits), Expect = 3.3e-55, Sum P(2) = 3.3e-55
Identities = 30/61 (49%), Positives = 43/61 (70%)
Query: 409 LKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSTTTQGRLDSFFTIRR--EEKRK 466
LKW +PD DGL++++ K F+EDRIR+GA+KL K QGRLD FF + + ++KRK
Sbjct: 299 LKWKEPDVDGLIEFMVKQKGFSEDRIRSGAEKLKKGLKGGVQGRLDGFFKVVKTDDKKRK 358
Query: 467 S 467
+
Sbjct: 359 A 359
Score = 117 (46.2 bits), Expect = 2.7e-16, Sum P(2) = 2.7e-16
Identities = 38/114 (33%), Positives = 56/114 (49%)
Query: 126 HEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVP---EGWLY 182
+EE L L+G C + EL + + E++DT Y P +
Sbjct: 139 NEEAKKLLQLMGIP-CVDAPCEAEAQCAELARGGKVYAAASEDMDTLCYEPPFLLRHLTF 197
Query: 183 KEAREL----FRHPE-VA--DPETIEFIDLCILLGCDYCDSIRGIGPKRAIELL 229
EAR++ + + +A D +FIDLCILLGCDYC+SI+GIG A +L+
Sbjct: 198 SEARKMPIDQIEYKDAIAGLDMTKEQFIDLCILLGCDYCESIKGIGQATAFKLI 251
>UNIPROTKB|A4QS18 [details] [associations]
symbol:FEN1 "Flap endonuclease 1" species:242507
"Magnaporthe oryzae 70-15" [GO:0005575 "cellular_component"
evidence=ND] HAMAP:MF_00614 InterPro:IPR006084 InterPro:IPR006085
InterPro:IPR006086 InterPro:IPR008918 InterPro:IPR019974
InterPro:IPR020045 InterPro:IPR023426 Pfam:PF00752 Pfam:PF00867
PRINTS:PR00853 PROSITE:PS00841 PROSITE:PS00842 SMART:SM00279
SMART:SM00484 SMART:SM00485 GO:GO:0005739 GO:GO:0005654
GO:GO:0005730 GO:GO:0046872 GO:GO:0003677 GO:GO:0006260
GO:GO:0006281 GO:GO:0004527 GO:GO:0090305 GO:GO:0004519
EMBL:CM001234 eggNOG:COG0258 PANTHER:PTHR11081 SUPFAM:SSF47807
KO:K04799 OrthoDB:EOG41VPBP RefSeq:XP_003716519.1 STRING:A4QS18
EnsemblFungi:MGG_03419T0 GeneID:2676517 KEGG:mgr:MGG_03419
Uniprot:A4QS18
Length = 394
Score = 431 (156.8 bits), Expect = 6.1e-54, Sum P(2) = 6.1e-54
Identities = 80/136 (58%), Positives = 106/136 (77%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVLE 120
AP EAEAQCA + +AGKV+A A+EDMD L F S ILLRH+TFSEARK P+QE H++KVLE
Sbjct: 155 APTEAEAQCAVLARAGKVFAAASEDMDTLCFDSPILLRHLTFSEARKEPIQEIHVDKVLE 214
Query: 121 GMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTK--KYTVPE 178
G+++ ++F+DLCILLGCDY D I +GP A++LI+EH S+E I+E + KYTVPE
Sbjct: 215 GLDMDRKQFVDLCILLGCDYLDPIPKVGPSTALKLIREHGSLETIVEKMKKGELKYTVPE 274
Query: 179 GWLYKEARELFRHPEV 194
W +++AR+LF +P V
Sbjct: 275 DWPFEDARDLFFNPAV 290
Score = 298 (110.0 bits), Expect = 2.1e-39, Sum P(2) = 2.1e-39
Identities = 54/90 (60%), Positives = 73/90 (81%)
Query: 318 RKICIDASMSLYQFLIAVRSEGNQLMSVDGEPTSHLMGTFYRTIRLVEHGLKPIYVFDGK 377
RK+ IDASMS+Y FLIAVRS G L + DG+ TSHLMG FYRT+R+V++G+KP+YVFDG
Sbjct: 29 RKVAIDASMSIYSFLIAVRSNGEMLTNEDGQTTSHLMGMFYRTLRMVDNGIKPLYVFDGA 88
Query: 378 PPTLKSGELNKRMEKREDAQKALAKAQEQG 407
PP LKSGEL +R +++++A + L +A+E G
Sbjct: 89 PPKLKSGELARRYQRKQEALEGLEEARETG 118
Score = 195 (73.7 bits), Expect = 1.9e-23, Sum P(2) = 1.9e-23
Identities = 36/68 (52%), Positives = 50/68 (73%)
Query: 232 FIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTK--KYTVPEGWLYKEAR 289
F+DLCILLGCDY D I +GP A++LI+EH S+E I+E + KYTVPE W +++AR
Sbjct: 223 FVDLCILLGCDYLDPIPKVGPSTALKLIREHGSLETIVEKMKKGELKYTVPEDWPFEDAR 282
Query: 290 ELFRHPEI 297
+LF +P +
Sbjct: 283 DLFFNPAV 290
Score = 144 (55.7 bits), Expect = 6.1e-54, Sum P(2) = 6.1e-54
Identities = 30/60 (50%), Positives = 40/60 (66%)
Query: 410 KWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSTTTQGRLDSFF--TIRREEKRKS 467
KW PD +GLVKYL +K F+EDR+R GA +L KA T+ Q RL+ FF R E++K+
Sbjct: 301 KWEKPDVEGLVKYLVTEKGFSEDRVRPGALRLEKALGTSQQQRLEGFFKPVARTAEEQKA 360
Score = 143 (55.4 bits), Expect = 3.8e-07, Sum P(2) = 3.8e-07
Identities = 30/60 (50%), Positives = 40/60 (66%)
Query: 4 KWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSSTTQGRLDSFF--TIRREEKRKA 61
KW PD +GLVKYL +K F+EDR+R GA +L KA ++ Q RL+ FF R E++KA
Sbjct: 301 KWEKPDVEGLVKYLVTEKGFSEDRVRPGALRLEKALGTSQQQRLEGFFKPVARTAEEQKA 360
Score = 105 (42.0 bits), Expect = 1.8e-13, Sum P(2) = 1.8e-13
Identities = 19/37 (51%), Positives = 26/37 (70%)
Query: 193 EVADPETIEFIDLCILLGCDYCDSIRGIGPKRAIELL 229
E D + +F+DLCILLGCDY D I +GP A++L+
Sbjct: 214 EGLDMDRKQFVDLCILLGCDYLDPIPKVGPSTALKLI 250
Score = 45 (20.9 bits), Expect = 1.6e-43, Sum P(2) = 1.6e-43
Identities = 11/27 (40%), Positives = 18/27 (66%)
Query: 381 LKSGELNKRMEKREDAQKALAKAQEQG 407
+K+ E K++ K E +KA AKA+ +G
Sbjct: 367 VKAEEAKKKL-KAEKKEKAKAKARPRG 392
>SGD|S000001596 [details] [associations]
symbol:RAD27 "5' to 3' exonuclease" species:4932
"Saccharomyces cerevisiae" [GO:0005634 "nucleus" evidence=IEA;IDA]
[GO:0046872 "metal ion binding" evidence=IEA] [GO:0000734 "gene
conversion at mating-type locus, DNA repair synthesis"
evidence=IMP] [GO:0006286 "base-excision repair, base-free
sugar-phosphate removal" evidence=IGI;IMP] [GO:0005739
"mitochondrion" evidence=IEA;IDA] [GO:0016788 "hydrolase activity,
acting on ester bonds" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003824 "catalytic activity" evidence=IEA]
[GO:0004518 "nuclease activity" evidence=IEA] [GO:0008409 "5'-3'
exonuclease activity" evidence=IEA;IDA] [GO:0005654 "nucleoplasm"
evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA] [GO:0090305
"nucleic acid phosphodiester bond hydrolysis" evidence=IEA]
[GO:0000287 "magnesium ion binding" evidence=IEA] [GO:0006281 "DNA
repair" evidence=IEA] [GO:0006284 "base-excision repair"
evidence=IEA] [GO:0017108 "5'-flap endonuclease activity"
evidence=IEA;IDA] [GO:0043137 "DNA replication, removal of RNA
primer" evidence=IEA;IDA] [GO:0006303 "double-strand break repair
via nonhomologous end joining" evidence=IDA] [GO:0001302
"replicative cell aging" evidence=IMP] [GO:0004519 "endonuclease
activity" evidence=IEA] [GO:0004527 "exonuclease activity"
evidence=IEA] [GO:0006260 "DNA replication" evidence=IEA]
[GO:0006974 "response to DNA damage stimulus" evidence=IEA]
[GO:0016787 "hydrolase activity" evidence=IEA] HAMAP:MF_00614
InterPro:IPR006084 InterPro:IPR006085 InterPro:IPR006086
InterPro:IPR008918 InterPro:IPR019974 InterPro:IPR020045
InterPro:IPR023426 Pfam:PF00752 Pfam:PF00867 PRINTS:PR00853
PROSITE:PS00841 PROSITE:PS00842 SMART:SM00279 SMART:SM00484
SMART:SM00485 SGD:S000001596 GO:GO:0005739 GO:GO:0005634
GO:GO:0005654 GO:GO:0005730 GO:GO:0046872 GO:GO:0003677
GO:GO:0001302 EMBL:BK006944 EMBL:S93804 GO:GO:0006303 GO:GO:0017108
GO:GO:0043137 GO:GO:0008409 eggNOG:COG0258 PANTHER:PTHR11081
SUPFAM:SSF47807 GO:GO:0000734 GeneTree:ENSGT00640000091478
KO:K04799 OMA:DYDSLLF OrthoDB:EOG41VPBP EMBL:Z28113 PIR:S22267
RefSeq:NP_012809.1 ProteinModelPortal:P26793 SMR:P26793
DIP:DIP-2325N IntAct:P26793 MINT:MINT-536469 STRING:P26793
PaxDb:P26793 PeptideAtlas:P26793 EnsemblFungi:YKL113C GeneID:853747
KEGG:sce:YKL113C CYGD:YKL113c NextBio:974807 Genevestigator:P26793
GermOnline:YKL113C GO:GO:0006286 Uniprot:P26793
Length = 382
Score = 427 (155.4 bits), Expect = 1.3e-53, Sum P(2) = 1.3e-53
Identities = 83/145 (57%), Positives = 106/145 (73%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVLE 120
AP EAEAQCA + K GKVYA A+EDMD L + + LLRH+TFSEA+K P+ E E VL
Sbjct: 153 APTEAEAQCAELAKKGKVYAAASEDMDTLCYRTPFLLRHLTFSEAKKEPIHEIDTELVLR 212
Query: 121 GMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDT-----KKYT 175
G++L+ E+F+DLCI+LGCDYC+SIRG+GP A++LIK H SIEKI+E I++ K+
Sbjct: 213 GLDLTIEQFVDLCIMLGCDYCESIRGVGPVTALKLIKTHGSIEKIVEFIESGESNNTKWK 272
Query: 176 VPEGWLYKEARELFRHPEVADPETI 200
+PE W YK+AR LF PEV D I
Sbjct: 273 IPEDWPYKQARMLFLDPEVIDGNEI 297
Score = 300 (110.7 bits), Expect = 9.3e-40, Sum P(2) = 9.3e-40
Identities = 64/115 (55%), Positives = 84/115 (73%)
Query: 305 LVADVAPSSIRES-------RKICIDASMSLYQFLIAVRSE-GNQLMSVDGEPTSHLMGT 356
++++ PS+IR+S RK+ IDASMSLYQFLIAVR + G QL + GE TSHLMG
Sbjct: 9 IISEHVPSAIRKSDIKSFFGRKVAIDASMSLYQFLIAVRQQDGGQLTNEAGETTSHLMGM 68
Query: 357 FYRTIRLVEHGLKPIYVFDGKPPTLKSGELNKRMEKREDAQKALAKAQ-EQGKLK 410
FYRT+R++++G+KP YVFDGKPP LKS EL KR +R + +K LA+A E K+K
Sbjct: 69 FYRTLRMIDNGIKPCYVFDGKPPDLKSHELTKRSSRRVETEKKLAEATTELEKMK 123
Score = 233 (87.1 bits), Expect = 2.4e-28, Sum P(2) = 2.4e-28
Identities = 46/88 (52%), Positives = 62/88 (70%)
Query: 224 RAIEL-LYSFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDT-----KKY 277
R ++L + F+DLCI+LGCDYC+SIRG+GP A++LIK H SIEKI+E I++ K+
Sbjct: 212 RGLDLTIEQFVDLCIMLGCDYCESIRGVGPVTALKLIKTHGSIEKIVEFIESGESNNTKW 271
Query: 278 TVPEGWLYKEARELFRHPEIADPETIEL 305
+PE W YK+AR LF PE+ D I L
Sbjct: 272 KIPEDWPYKQARMLFLDPEVIDGNEINL 299
Score = 151 (58.2 bits), Expect = 1.0e-07, P = 1.0e-07
Identities = 28/66 (42%), Positives = 41/66 (62%)
Query: 1 MTLKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSSTTQGRLDSFFTIRREEKRK 60
+ LKWS P E L++YLC DK F+E+R+++G +L K S QGRLD FF + + K +
Sbjct: 297 INLKWSPPKEKELIEYLCDDKKFSEERVKSGISRLKKGLKSGIQGRLDGFFQVVPKTKEQ 356
Query: 61 APCEAE 66
A+
Sbjct: 357 LAAAAK 362
Score = 145 (56.1 bits), Expect = 1.3e-53, Sum P(2) = 1.3e-53
Identities = 26/58 (44%), Positives = 38/58 (65%)
Query: 409 LKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSTTTQGRLDSFFTIRREEKRK 466
LKWS P E L++YLC DK F+E+R+++G +L K + QGRLD FF + + K +
Sbjct: 299 LKWSPPKEKELIEYLCDDKKFSEERVKSGISRLKKGLKSGIQGRLDGFFQVVPKTKEQ 356
Score = 135 (52.6 bits), Expect = 9.7e-17, Sum P(2) = 9.7e-17
Identities = 50/139 (35%), Positives = 72/139 (51%)
Query: 103 SEARKLPVQEFHLEKVLEGMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSI 162
+E K+ QE L KV + +EE L L+G Y + + A EL K+ +
Sbjct: 117 TELEKMK-QERRLVKVSKE---HNEEAQKLLGLMGIPYIIAPTEAEAQCA-ELAKKGKVY 171
Query: 163 EKILENIDTKKYTVP---EGWLYKEARELFRHPEVADPE--------TIE-FIDLCILLG 210
E++DT Y P + EA++ H E+ D E TIE F+DLCI+LG
Sbjct: 172 AAASEDMDTLCYRTPFLLRHLTFSEAKKEPIH-EI-DTELVLRGLDLTIEQFVDLCIMLG 229
Query: 211 CDYCDSIRGIGPKRAIELL 229
CDYC+SIRG+GP A++L+
Sbjct: 230 CDYCESIRGVGPVTALKLI 248
>TAIR|locus:2146824 [details] [associations]
symbol:AT5G26680 species:3702 "Arabidopsis thaliana"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003824 "catalytic
activity" evidence=IEA] [GO:0004518 "nuclease activity"
evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM] [GO:0006281
"DNA repair" evidence=IEA;ISS] [GO:0008409 "5'-3' exonuclease
activity" evidence=IEA] [GO:0016788 "hydrolase activity, acting on
ester bonds" evidence=IEA] [GO:0005829 "cytosol" evidence=IDA]
[GO:0010228 "vegetative to reproductive phase transition of
meristem" evidence=RCA] HAMAP:MF_00614 InterPro:IPR006084
InterPro:IPR006085 InterPro:IPR006086 InterPro:IPR008918
InterPro:IPR019974 InterPro:IPR020045 InterPro:IPR023426
Pfam:PF00752 Pfam:PF00867 PRINTS:PR00853 PROSITE:PS00841
SMART:SM00279 SMART:SM00484 SMART:SM00485 GO:GO:0005829
GO:GO:0005739 EMBL:CP002688 GO:GO:0005654 GO:GO:0005730
GO:GO:0000287 GO:GO:0006284 GO:GO:0003677 GO:GO:0090305
GO:GO:0017108 GO:GO:0043137 GO:GO:0008409 PANTHER:PTHR11081
SUPFAM:SSF47807 KO:K04799 OMA:DYDSLLF IPI:IPI00536220
RefSeq:NP_850877.2 UniGene:At.47103 ProteinModelPortal:F4K191
SMR:F4K191 PRIDE:F4K191 EnsemblPlants:AT5G26680.1 GeneID:832721
KEGG:ath:AT5G26680 ArrayExpress:F4K191 Uniprot:F4K191
Length = 453
Score = 436 (158.5 bits), Expect = 4.2e-53, Sum P(2) = 4.2e-53
Identities = 80/143 (55%), Positives = 111/143 (77%)
Query: 60 KAPCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVL 119
+A EAEAQCAA+ K+GKVY A+EDMD+LTFG+ LRH+ +RK+PV EF + K+L
Sbjct: 155 EATSEAEAQCAALCKSGKVYGVASEDMDSLTFGAPKFLRHLMDPSSRKIPVMEFEVAKIL 214
Query: 120 EGMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEG 179
E ++L+ ++FIDLCIL GCDYCDSIRGIG + A++LI++H SIE ILEN++ ++Y +PE
Sbjct: 215 EELQLTMDQFIDLCILSGCDYCDSIRGIGGQTALKLIRQHGSIETILENLNKERYQIPEE 274
Query: 180 WLYKEARELFRHPEV-ADPETIE 201
W Y EAR+LF+ P+V D E ++
Sbjct: 275 WPYNEARKLFKEPDVITDEEQLD 297
Score = 271 (100.5 bits), Expect = 5.3e-31, Sum P(2) = 5.3e-31
Identities = 61/112 (54%), Positives = 75/112 (66%)
Query: 304 ELVADVAPSSIRES-------RKICIDASMSLYQFLIAVRSEGNQLMSVD-GEPTSHLMG 355
+L+AD APS ++E RKI +DASMS+YQFLI V G ++++ + GE TSHL G
Sbjct: 8 KLLADNAPSCMKEQKFESYFGRKIAVDASMSIYQFLIVVGRTGTEMLTNEAGEVTSHLQG 67
Query: 356 TFYRTIRLVEHGLKPIYVFDGKPPTLKSGELNKRMEKREDAQKALAKAQEQG 407
F RTIRL+E G+KP+YVFDGKPP LK EL KR KR DA L A E G
Sbjct: 68 MFNRTIRLLEAGIKPVYVFDGKPPELKRQELAKRYSKRADATADLTGAIEAG 119
Score = 246 (91.7 bits), Expect = 7.6e-28, Sum P(2) = 7.6e-28
Identities = 44/75 (58%), Positives = 60/75 (80%)
Query: 232 FIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGWLYKEAREL 291
FIDLCIL GCDYCDSIRGIG + A++LI++H SIE ILEN++ ++Y +PE W Y EAR+L
Sbjct: 224 FIDLCILSGCDYCDSIRGIGGQTALKLIRQHGSIETILENLNKERYQIPEEWPYNEARKL 283
Query: 292 FRHPE-IADPETIEL 305
F+ P+ I D E +++
Sbjct: 284 FKEPDVITDEEQLDI 298
Score = 131 (51.2 bits), Expect = 4.2e-53, Sum P(2) = 4.2e-53
Identities = 22/54 (40%), Positives = 38/54 (70%)
Query: 404 QEQGKLKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSTTTQGRLDSFF 457
+EQ +KW+ PDE+G+V++L + F DR+ +K+ A++ ++QGRL+SFF
Sbjct: 293 EEQLDIKWTSPDEEGIVQFLVNENGFNIDRVTKAIEKIKTAKNKSSQGRLESFF 346
Score = 126 (49.4 bits), Expect = 8.2e-05, P = 8.2e-05
Identities = 20/51 (39%), Positives = 36/51 (70%)
Query: 1 MTLKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSSTTQGRLDSFF 51
+ +KW+ PDE+G+V++L + F DR+ +K+ A++ ++QGRL+SFF
Sbjct: 296 LDIKWTSPDEEGIVQFLVNENGFNIDRVTKAIEKIKTAKNKSSQGRLESFF 346
Score = 120 (47.3 bits), Expect = 2.5e-13, Sum P(2) = 2.5e-13
Identities = 21/29 (72%), Positives = 26/29 (89%)
Query: 201 EFIDLCILLGCDYCDSIRGIGPKRAIELL 229
+FIDLCIL GCDYCDSIRGIG + A++L+
Sbjct: 223 QFIDLCILSGCDYCDSIRGIGGQTALKLI 251
>UNIPROTKB|I3L3E9 [details] [associations]
symbol:FEN1 "Flap endonuclease 1" species:9606 "Homo
sapiens" [GO:0003677 "DNA binding" evidence=IEA] [GO:0004518
"nuclease activity" evidence=IEA] [GO:0006281 "DNA repair"
evidence=IEA] InterPro:IPR006084 InterPro:IPR006086
InterPro:IPR008918 InterPro:IPR020045 Pfam:PF00867 SMART:SM00279
GO:GO:0003677 GO:GO:0006281 GO:GO:0090305 GO:GO:0004518
PANTHER:PTHR11081 SUPFAM:SSF47807 HGNC:HGNC:3650 ChiTaRS:FEN1
EMBL:AP002380 Ensembl:ENST00000535307 Uniprot:I3L3E9
Length = 154
Score = 368 (134.6 bits), Expect = 6.8e-51, Sum P(2) = 6.8e-51
Identities = 63/102 (61%), Positives = 86/102 (84%)
Query: 100 MTFSEARKLPVQEFHLEKVLEGMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEH 159
+T SEA+KLP+QEFHL ++L+ + L+ E+F+DLCILLG DYC+SIRGIGPKRA++LI++H
Sbjct: 2 LTASEAKKLPIQEFHLSRILQELGLNQEQFVDLCILLGSDYCESIRGIGPKRAVDLIQKH 61
Query: 160 RSIEKILENIDTKKYTVPEGWLYKEARELFRHPEVADPETIE 201
+SIE+I+ +D KY VPE WL+KEA +LF PEV DPE++E
Sbjct: 62 KSIEEIVRRLDPNKYPVPENWLHKEAHQLFLEPEVLDPESVE 103
Score = 283 (104.7 bits), Expect = 3.7e-41, Sum P(2) = 3.7e-41
Identities = 48/74 (64%), Positives = 63/74 (85%)
Query: 232 FIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGWLYKEAREL 291
F+DLCILLG DYC+SIRGIGPKRA++LI++H+SIE+I+ +D KY VPE WL+KEA +L
Sbjct: 31 FVDLCILLGSDYCESIRGIGPKRAVDLIQKHKSIEEIVRRLDPNKYPVPENWLHKEAHQL 90
Query: 292 FRHPEIADPETIEL 305
F PE+ DPE++EL
Sbjct: 91 FLEPEVLDPESVEL 104
Score = 178 (67.7 bits), Expect = 6.8e-51, Sum P(2) = 6.8e-51
Identities = 30/53 (56%), Positives = 44/53 (83%)
Query: 405 EQGKLKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSTTTQGRLDSFF 457
E +LKWS+P+E+ L+K++CG+K F+E+RIR+G K+L K+R +TQGRLD FF
Sbjct: 100 ESVELKWSEPNEEELIKFMCGEKQFSEERIRSGVKRLSKSRQGSTQGRLDDFF 152
Score = 177 (67.4 bits), Expect = 8.8e-13, P = 8.8e-13
Identities = 29/49 (59%), Positives = 42/49 (85%)
Query: 3 LKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSSTTQGRLDSFF 51
LKWS+P+E+ L+K++CG+K F+E+RIR+G K+L K+R +TQGRLD FF
Sbjct: 104 LKWSEPNEEELIKFMCGEKQFSEERIRSGVKRLSKSRQGSTQGRLDDFF 152
Score = 133 (51.9 bits), Expect = 1.4e-24, Sum P(2) = 1.4e-24
Identities = 29/60 (48%), Positives = 40/60 (66%)
Query: 170 DTKKYTVPEGWLYKEARELFRHPEVADPETIEFIDLCILLGCDYCDSIRGIGPKRAIELL 229
+ KK + E L + +EL + E +F+DLCILLG DYC+SIRGIGPKRA++L+
Sbjct: 6 EAKKLPIQEFHLSRILQELGLNQE-------QFVDLCILLGSDYCESIRGIGPKRAVDLI 58
>ZFIN|ZDB-GENE-050417-81 [details] [associations]
symbol:zgc:110269 "zgc:110269" species:7955 "Danio
rerio" [GO:0003677 "DNA binding" evidence=IEA] [GO:0003824
"catalytic activity" evidence=IEA] [GO:0004518 "nuclease activity"
evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0004519 "endonuclease activity" evidence=IEA]
[GO:0005739 "mitochondrion" evidence=IEA] [GO:0006974 "response to
DNA damage stimulus" evidence=IEA] [GO:0046872 "metal ion binding"
evidence=IEA] [GO:0004527 "exonuclease activity" evidence=IEA]
[GO:0006260 "DNA replication" evidence=IEA] [GO:0005654
"nucleoplasm" evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
HAMAP:MF_00614 InterPro:IPR006084 InterPro:IPR006085
InterPro:IPR006086 InterPro:IPR008918 InterPro:IPR020045
Pfam:PF00752 Pfam:PF00867 PRINTS:PR00853 PROSITE:PS00841
PROSITE:PS00842 SMART:SM00279 SMART:SM00484 SMART:SM00485
ZFIN:ZDB-GENE-050417-81 GO:GO:0005739 GO:GO:0005654 GO:GO:0005730
GO:GO:0046872 GO:GO:0003677 GO:GO:0006260 GO:GO:0006281
GO:GO:0004527 GO:GO:0090305 GO:GO:0004519 eggNOG:COG0258
PANTHER:PTHR11081 SUPFAM:SSF47807 GeneTree:ENSGT00640000091478
HOGENOM:HOG000193853 HOVERGEN:HBG000844 KO:K04799 EMBL:CR377211
EMBL:BC092837 IPI:IPI00633624 RefSeq:NP_001017611.2
UniGene:Dr.13872 ProteinModelPortal:B0UXL7 STRING:B0UXL7
Ensembl:ENSDART00000005381 GeneID:550274 KEGG:dre:550274
InParanoid:Q568J1 OMA:ELVWTEP OrthoDB:EOG4FFD2P NextBio:20879536
ArrayExpress:B0UXL7 Bgee:B0UXL7 Uniprot:B0UXL7
Length = 350
Score = 386 (140.9 bits), Expect = 1.8e-46, Sum P(2) = 1.8e-46
Identities = 72/139 (51%), Positives = 99/139 (71%)
Query: 60 KAPCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVL 119
KAP EAEA CA + K G V A A+EDMD L FG +LLR + + R + E+ L K+L
Sbjct: 126 KAPGEAEALCAHLAKIGTVNAVASEDMDTLAFGGTVLLRQL--NAKRDSEITEYSLPKLL 183
Query: 120 EGMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEG 179
E ++L +EEF+DLCILLGCDYCD I G+GP RA++LIKEH +IE ++E+++ K + +P
Sbjct: 184 EALQLKYEEFVDLCILLGCDYCDKIGGLGPSRALKLIKEHHTIEGVMEHVNRKTHPIPLN 243
Query: 180 WLYKEARELF-RHPEVADP 197
W YK+AR+LF P++ DP
Sbjct: 244 WQYKDARKLFFETPKIDDP 262
Score = 242 (90.2 bits), Expect = 1.5e-18, P = 1.5e-18
Identities = 45/83 (54%), Positives = 62/83 (74%)
Query: 222 PK--RAIELLYS-FIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYT 278
PK A++L Y F+DLCILLGCDYCD I G+GP RA++LIKEH +IE ++E+++ K +
Sbjct: 180 PKLLEALQLKYEEFVDLCILLGCDYCDKIGGLGPSRALKLIKEHHTIEGVMEHVNRKTHP 239
Query: 279 VPEGWLYKEARELF-RHPEIADP 300
+P W YK+AR+LF P+I DP
Sbjct: 240 IPLNWQYKDARKLFFETPKIDDP 262
Score = 129 (50.5 bits), Expect = 2.7e-13, Sum P(2) = 2.7e-13
Identities = 21/29 (72%), Positives = 26/29 (89%)
Query: 201 EFIDLCILLGCDYCDSIRGIGPKRAIELL 229
EF+DLCILLGCDYCD I G+GP RA++L+
Sbjct: 192 EFVDLCILLGCDYCDKIGGLGPSRALKLI 220
Score = 118 (46.6 bits), Expect = 1.8e-46, Sum P(2) = 1.8e-46
Identities = 32/89 (35%), Positives = 47/89 (52%)
Query: 394 EDAQKALAKAQ--EQGKLKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKK----LLKARST 447
+DA+K + + L WS+PDE+GLV++LC +K E+R+R KK LLK R
Sbjct: 247 KDARKLFFETPKIDDPVLAWSEPDEEGLVQFLCKEKPLKEERVRGRMKKFREMLLKRRKQ 306
Query: 448 ---------TTQGRLDSFFTIRREEKRKS 467
T Q RL+ FF R+ + +S
Sbjct: 307 REVNMQMGQTRQSRLEDFFPATRKRRAES 335
Score = 117 (46.2 bits), Expect = 0.00052, P = 0.00052
Identities = 32/76 (42%), Positives = 41/76 (53%)
Query: 3 LKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKK----LLKARSS---------TTQGRLDS 49
L WS+PDE+GLV++LC +K E+R+R KK LLK R T Q RL+
Sbjct: 264 LAWSEPDEEGLVQFLCKEKPLKEERVRGRMKKFREMLLKRRKQREVNMQMGQTRQSRLED 323
Query: 50 FFTIRREEKRKAPCEA 65
FF R KR+A A
Sbjct: 324 FFPATR--KRRAESAA 337
Score = 116 (45.9 bits), Expect = 7.8e-12, Sum P(2) = 7.8e-12
Identities = 35/89 (39%), Positives = 49/89 (55%)
Query: 310 APSSIRE------SRKI-CIDASMSLYQFLIAVRSEGNQLMSVDGEPTSHLMGTFYRTIR 362
AP+S+R S KI +D S+ + QF A+ G+ +S P L G FYRT+
Sbjct: 14 APASMRSKEIGDYSGKIIALDTSIVVNQFRSAL--PGHLKLS----P---LAGLFYRTLA 64
Query: 363 LVEHGLKPIYVFDGKPPTLKSGELNKRME 391
+EH +KP++V DGKPP K L KR +
Sbjct: 65 FLEHDIKPVFVLDGKPPHQKRAVLEKRAQ 93
>GENEDB_PFALCIPARUM|PFD0420c [details] [associations]
symbol:PFD0420c "flap exonuclease, putative"
species:5833 "Plasmodium falciparum" [GO:0004520
"endodeoxyribonuclease activity" evidence=ISS] HAMAP:MF_00614
InterPro:IPR006084 InterPro:IPR006085 InterPro:IPR006086
InterPro:IPR008918 InterPro:IPR019974 InterPro:IPR020045
InterPro:IPR023426 Pfam:PF00752 Pfam:PF00867 PRINTS:PR00853
PROSITE:PS00841 PROSITE:PS00842 SMART:SM00279 SMART:SM00484
SMART:SM00485 GO:GO:0005739 GO:GO:0005654 GO:GO:0005730
GO:GO:0046872 GO:GO:0003677 GO:GO:0006260 GO:GO:0006281
GO:GO:0004527 EMBL:AL844503 GO:GO:0004520 PANTHER:PTHR11081
SUPFAM:SSF47807 HSSP:O93634 HOGENOM:HOG000193853 KO:K04799
ProtClustDB:PTZ00217 EMBL:AF093702 RefSeq:XP_001351399.1
ProteinModelPortal:Q7K734 IntAct:Q7K734 MINT:MINT-1729073
EnsemblProtists:PFD0420c:mRNA GeneID:812356
GenomeReviews:AL844503_GR KEGG:pfa:PFD0420c
EuPathDB:PlasmoDB:PF3D7_0408500 OMA:HTININS Uniprot:Q7K734
Length = 672
Score = 364 (133.2 bits), Expect = 1.5e-43, Sum P(2) = 1.5e-43
Identities = 77/156 (49%), Positives = 103/156 (66%)
Query: 60 KAPCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEA-----------RKL 108
+APCEAE+QCA + K +ATATED DAL FG+ IL+R++ + R
Sbjct: 156 EAPCEAESQCAFLTKYNLAHATATEDADALVFGTKILIRNLNANATSNQNKNKNNSKRGY 215
Query: 109 PVQEFHLEKVLEGMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILEN 168
+ E +LE+VL+G+ L+ +EFID CIL GCDYCD+I+GIG K A LIKE+ IEKI+EN
Sbjct: 216 ILTEINLEQVLKGLNLTMDEFIDFCILCGCDYCDTIKGIGSKTAYNLIKEYNCIEKIIEN 275
Query: 169 IDTKKYTVPEGWLYKEARELFRHPEVADPETIEFID 204
ID KY VP + ++EAR+ F +P V E I+ ID
Sbjct: 276 IDQNKYQVPSNFRFQEARKSFINPNVLPKEDIK-ID 310
Score = 286 (105.7 bits), Expect = 3.3e-31, Sum P(2) = 3.3e-31
Identities = 65/117 (55%), Positives = 83/117 (70%)
Query: 304 ELVADVAPSSIRE-------SRKICIDASMSLYQFLIAVR-SE--GNQLMSVDGEPTSHL 353
+ +AD AP++I+E R I IDASMSLYQF+IA+R SE GN L + GE TSH+
Sbjct: 8 KFIADAAPNAIKEIKIESLMGRIIAIDASMSLYQFIIAIRDSEQYGN-LTNESGETTSHI 66
Query: 354 MGTFYRTIRLVEHGLKPIYVFDGKPPTLKSGELNKRMEKREDAQKALAKAQEQGKLK 410
G R+IRL+E+GLKPIYVFDG PP LK EL KR EKR+ A++ L KA+E+G L+
Sbjct: 67 SGLMSRSIRLMENGLKPIYVFDGAPPELKGSELEKRGEKRQKAEELLKKAKEEGNLE 123
Score = 250 (93.1 bits), Expect = 3.1e-18, P = 3.1e-18
Identities = 77/219 (35%), Positives = 114/219 (52%)
Query: 232 FIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGWLYKEAREL 291
FID CIL GCDYCD+I+GIG K A LIKE+ IEKI+ENID KY VP + ++EAR+
Sbjct: 236 FIDFCILCGCDYCDTIKGIGSKTAYNLIKEYNCIEKIIENIDQNKYQVPSNFRFQEARKS 295
Query: 292 FRHPEIADPETIELVADVAPSSIRESRKICIDASMSLYQFL-IAVRSEGNQLMSVDGEPT 350
F +P + E I++ D I E + I Y F + V + N+L+ T
Sbjct: 296 FINPNVLPKEDIKI--DWNEPQIEELKHFLIKD----YNFNELRVTNYINRLLKARKVTT 349
Query: 351 SHLMGTFYR------TIRLVEHGLKP--IYVFDGKP-PTLKSGELNKRMEKREDAQKALA 401
+ F+ T +VE K + GK PT +G+ NK+ + ++A A
Sbjct: 350 QRRLDNFFTACTKKSTKLIVEETKKEQTLPARKGKKRPT--AGDKNKQKAVKRKIEQANA 407
Query: 402 ----KAQEQGKLKWSDPDEDGLVKYLCGDKNFAEDRIRN 436
K +E+ K ++ +EDG +K + +KN ED I++
Sbjct: 408 NGHHKMKEENKSVDNEKNEDG-IKSVDNEKN--EDGIKS 443
Score = 126 (49.4 bits), Expect = 1.5e-43, Sum P(2) = 1.5e-43
Identities = 27/63 (42%), Positives = 38/63 (60%)
Query: 404 QEQGKLKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSTTTQGRLDSFFTIRREE 463
+E K+ W++P + L +L D NF E R+ N +LLKAR TTQ RLD+FFT ++
Sbjct: 304 KEDIKIDWNEPQIEELKHFLIKDYNFNELRVTNYINRLLKARKVTTQRRLDNFFTACTKK 363
Query: 464 KRK 466
K
Sbjct: 364 STK 366
Score = 120 (47.3 bits), Expect = 0.00066, P = 0.00066
Identities = 30/81 (37%), Positives = 43/81 (53%)
Query: 3 LKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSSTTQGRLDSFFTIRREEKRKAP 62
+ W++P + L +L D NF E R+ N +LLKAR TTQ RLD+FFT ++ K
Sbjct: 309 IDWNEPQIEELKHFLIKDYNFNELRVTNYINRLLKARKVTTQRRLDNFFTACTKKSTKLI 368
Query: 63 CE-AEAQCAAMVKAGKVYATA 82
E + + + GK TA
Sbjct: 369 VEETKKEQTLPARKGKKRPTA 389
Score = 117 (46.2 bits), Expect = 5.6e-12, Sum P(2) = 5.6e-12
Identities = 23/39 (58%), Positives = 28/39 (71%)
Query: 201 EFIDLCILLGCDYCDSIRGIGPKRAIELL--YSFIDLCI 237
EFID CIL GCDYCD+I+GIG K A L+ Y+ I+ I
Sbjct: 235 EFIDFCILCGCDYCDTIKGIGSKTAYNLIKEYNCIEKII 273
>UNIPROTKB|Q7K734 [details] [associations]
symbol:FEN1 "Flap endonuclease 1" species:36329 "Plasmodium
falciparum 3D7" [GO:0004520 "endodeoxyribonuclease activity"
evidence=ISS] HAMAP:MF_00614 InterPro:IPR006084 InterPro:IPR006085
InterPro:IPR006086 InterPro:IPR008918 InterPro:IPR019974
InterPro:IPR020045 InterPro:IPR023426 Pfam:PF00752 Pfam:PF00867
PRINTS:PR00853 PROSITE:PS00841 PROSITE:PS00842 SMART:SM00279
SMART:SM00484 SMART:SM00485 GO:GO:0005739 GO:GO:0005654
GO:GO:0005730 GO:GO:0046872 GO:GO:0003677 GO:GO:0006260
GO:GO:0006281 GO:GO:0004527 EMBL:AL844503 GO:GO:0004520
PANTHER:PTHR11081 SUPFAM:SSF47807 HSSP:O93634 HOGENOM:HOG000193853
KO:K04799 ProtClustDB:PTZ00217 EMBL:AF093702 RefSeq:XP_001351399.1
ProteinModelPortal:Q7K734 IntAct:Q7K734 MINT:MINT-1729073
EnsemblProtists:PFD0420c:mRNA GeneID:812356
GenomeReviews:AL844503_GR KEGG:pfa:PFD0420c
EuPathDB:PlasmoDB:PF3D7_0408500 OMA:HTININS Uniprot:Q7K734
Length = 672
Score = 364 (133.2 bits), Expect = 1.5e-43, Sum P(2) = 1.5e-43
Identities = 77/156 (49%), Positives = 103/156 (66%)
Query: 60 KAPCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEA-----------RKL 108
+APCEAE+QCA + K +ATATED DAL FG+ IL+R++ + R
Sbjct: 156 EAPCEAESQCAFLTKYNLAHATATEDADALVFGTKILIRNLNANATSNQNKNKNNSKRGY 215
Query: 109 PVQEFHLEKVLEGMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILEN 168
+ E +LE+VL+G+ L+ +EFID CIL GCDYCD+I+GIG K A LIKE+ IEKI+EN
Sbjct: 216 ILTEINLEQVLKGLNLTMDEFIDFCILCGCDYCDTIKGIGSKTAYNLIKEYNCIEKIIEN 275
Query: 169 IDTKKYTVPEGWLYKEARELFRHPEVADPETIEFID 204
ID KY VP + ++EAR+ F +P V E I+ ID
Sbjct: 276 IDQNKYQVPSNFRFQEARKSFINPNVLPKEDIK-ID 310
Score = 286 (105.7 bits), Expect = 3.3e-31, Sum P(2) = 3.3e-31
Identities = 65/117 (55%), Positives = 83/117 (70%)
Query: 304 ELVADVAPSSIRE-------SRKICIDASMSLYQFLIAVR-SE--GNQLMSVDGEPTSHL 353
+ +AD AP++I+E R I IDASMSLYQF+IA+R SE GN L + GE TSH+
Sbjct: 8 KFIADAAPNAIKEIKIESLMGRIIAIDASMSLYQFIIAIRDSEQYGN-LTNESGETTSHI 66
Query: 354 MGTFYRTIRLVEHGLKPIYVFDGKPPTLKSGELNKRMEKREDAQKALAKAQEQGKLK 410
G R+IRL+E+GLKPIYVFDG PP LK EL KR EKR+ A++ L KA+E+G L+
Sbjct: 67 SGLMSRSIRLMENGLKPIYVFDGAPPELKGSELEKRGEKRQKAEELLKKAKEEGNLE 123
Score = 250 (93.1 bits), Expect = 3.1e-18, P = 3.1e-18
Identities = 77/219 (35%), Positives = 114/219 (52%)
Query: 232 FIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGWLYKEAREL 291
FID CIL GCDYCD+I+GIG K A LIKE+ IEKI+ENID KY VP + ++EAR+
Sbjct: 236 FIDFCILCGCDYCDTIKGIGSKTAYNLIKEYNCIEKIIENIDQNKYQVPSNFRFQEARKS 295
Query: 292 FRHPEIADPETIELVADVAPSSIRESRKICIDASMSLYQFL-IAVRSEGNQLMSVDGEPT 350
F +P + E I++ D I E + I Y F + V + N+L+ T
Sbjct: 296 FINPNVLPKEDIKI--DWNEPQIEELKHFLIKD----YNFNELRVTNYINRLLKARKVTT 349
Query: 351 SHLMGTFYR------TIRLVEHGLKP--IYVFDGKP-PTLKSGELNKRMEKREDAQKALA 401
+ F+ T +VE K + GK PT +G+ NK+ + ++A A
Sbjct: 350 QRRLDNFFTACTKKSTKLIVEETKKEQTLPARKGKKRPT--AGDKNKQKAVKRKIEQANA 407
Query: 402 ----KAQEQGKLKWSDPDEDGLVKYLCGDKNFAEDRIRN 436
K +E+ K ++ +EDG +K + +KN ED I++
Sbjct: 408 NGHHKMKEENKSVDNEKNEDG-IKSVDNEKN--EDGIKS 443
Score = 126 (49.4 bits), Expect = 1.5e-43, Sum P(2) = 1.5e-43
Identities = 27/63 (42%), Positives = 38/63 (60%)
Query: 404 QEQGKLKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSTTTQGRLDSFFTIRREE 463
+E K+ W++P + L +L D NF E R+ N +LLKAR TTQ RLD+FFT ++
Sbjct: 304 KEDIKIDWNEPQIEELKHFLIKDYNFNELRVTNYINRLLKARKVTTQRRLDNFFTACTKK 363
Query: 464 KRK 466
K
Sbjct: 364 STK 366
Score = 120 (47.3 bits), Expect = 0.00066, P = 0.00066
Identities = 30/81 (37%), Positives = 43/81 (53%)
Query: 3 LKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSSTTQGRLDSFFTIRREEKRKAP 62
+ W++P + L +L D NF E R+ N +LLKAR TTQ RLD+FFT ++ K
Sbjct: 309 IDWNEPQIEELKHFLIKDYNFNELRVTNYINRLLKARKVTTQRRLDNFFTACTKKSTKLI 368
Query: 63 CE-AEAQCAAMVKAGKVYATA 82
E + + + GK TA
Sbjct: 369 VEETKKEQTLPARKGKKRPTA 389
Score = 117 (46.2 bits), Expect = 5.6e-12, Sum P(2) = 5.6e-12
Identities = 23/39 (58%), Positives = 28/39 (71%)
Query: 201 EFIDLCILLGCDYCDSIRGIGPKRAIELL--YSFIDLCI 237
EFID CIL GCDYCD+I+GIG K A L+ Y+ I+ I
Sbjct: 235 EFIDFCILCGCDYCDTIKGIGSKTAYNLIKEYNCIEKII 273
>ASPGD|ASPL0000038590 [details] [associations]
symbol:AN2764 species:162425 "Emericella nidulans"
[GO:0043137 "DNA replication, removal of RNA primer" evidence=IEA]
[GO:0000723 "telomere maintenance" evidence=IEA] [GO:0006281 "DNA
repair" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0045145 "single-stranded
DNA specific 5'-3' exodeoxyribonuclease activity" evidence=IEA]
HAMAP:MF_00614 InterPro:IPR006084 InterPro:IPR006085
InterPro:IPR006086 InterPro:IPR008918 InterPro:IPR019974
InterPro:IPR020045 InterPro:IPR023426 Pfam:PF00752 Pfam:PF00867
PRINTS:PR00853 PROSITE:PS00841 PROSITE:PS00842 SMART:SM00279
SMART:SM00484 SMART:SM00485 GO:GO:0005739 GO:GO:0005654
GO:GO:0005730 GO:GO:0046872 GO:GO:0003677 GO:GO:0006260
GO:GO:0006281 EMBL:BN001306 GO:GO:0004527 GO:GO:0090305
GO:GO:0004519 EMBL:AACD01000049 eggNOG:COG0258 PANTHER:PTHR11081
SUPFAM:SSF47807 HOGENOM:HOG000193853 KO:K04799 OMA:DYDSLLF
RefSeq:XP_660368.1 ProteinModelPortal:Q5B9L6 STRING:Q5B9L6
EnsemblFungi:CADANIAT00010345 GeneID:2874366 KEGG:ani:AN2764.2
OrthoDB:EOG41VPBP Uniprot:Q5B9L6
Length = 395
Score = 431 (156.8 bits), Expect = 1.6e-40, P = 1.6e-40
Identities = 80/139 (57%), Positives = 106/139 (76%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVLE 120
AP EAEAQCA + +AGKVYA A+EDMD L F + ILLRH+TFSE RK P+QE HL + LE
Sbjct: 155 APTEAEAQCAVLARAGKVYAAASEDMDTLCFEAPILLRHLTFSEQRKEPIQEIHLNRALE 214
Query: 121 GMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENI--DTK-KYTVP 177
G+ + +FIDLCILLGCDY + I +GP A++LI++H ++EK++E+I D K KY +P
Sbjct: 215 GLGMDRNQFIDLCILLGCDYLEPIPKVGPNTALKLIRDHGTLEKVVESIEKDPKQKYVIP 274
Query: 178 EGWLYKEARELFRHPEVAD 196
E W Y++ARELF +P+V D
Sbjct: 275 ESWPYQDARELFLNPDVRD 293
Score = 313 (115.2 bits), Expect = 6.5e-28, P = 6.5e-28
Identities = 63/111 (56%), Positives = 83/111 (74%)
Query: 304 ELVADVAPSSIRES-------RKICIDASMSLYQFLIAVRSEGNQLMSVDGEPTSHLMGT 356
+++A+ AP +I+ RK+ IDASMS+Y FLIAVRSEG QLMS GE TSHLMG
Sbjct: 8 QVIAENAPDAIKAGDIKNHFGRKVAIDASMSIYSFLIAVRSEGQQLMSDTGETTSHLMGM 67
Query: 357 FYRTIRLVEHGLKPIYVFDGKPPTLKSGELNKRMEKREDAQKALAKAQEQG 407
FYRT+R+V++G+KP+YVFDG PP LKSGEL KR ++ +A +A +A+E G
Sbjct: 68 FYRTLRMVDNGIKPLYVFDGAPPKLKSGELAKRSARKHEATEAHEEAKETG 118
Score = 213 (80.0 bits), Expect = 1.1e-14, P = 1.1e-14
Identities = 44/92 (47%), Positives = 64/92 (69%)
Query: 215 DSIRGIGPKRAIELL----YSFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILE 270
+ I+ I RA+E L FIDLCILLGCDY + I +GP A++LI++H ++EK++E
Sbjct: 202 EPIQEIHLNRALEGLGMDRNQFIDLCILLGCDYLEPIPKVGPNTALKLIRDHGTLEKVVE 261
Query: 271 NI--DTK-KYTVPEGWLYKEARELFRHPEIAD 299
+I D K KY +PE W Y++ARELF +P++ D
Sbjct: 262 SIEKDPKQKYVIPESWPYQDARELFLNPDVRD 293
Score = 141 (54.7 bits), Expect = 1.7e-12, Sum P(2) = 1.7e-12
Identities = 38/103 (36%), Positives = 49/103 (47%)
Query: 355 GTFYRTIRLVEHGLKPIYVFDGKPPTLKSGELNKRMEKREDAQKALAKAQEQGKLKWSDP 414
GT + + +E K YV P + EL + R DA + KW P
Sbjct: 254 GTLEKVVESIEKDPKQKYVIPESWPYQDARELFLNPDVR-DAN------DPECDFKWEAP 306
Query: 415 DEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSTTTQGRLDSFF 457
D +GLV +L DK F EDR+RNGA +L K T Q RL+ FF
Sbjct: 307 DIEGLVDFLVKDKGFNEDRVRNGAARLQKNLKTAQQSRLEGFF 349
Score = 133 (51.9 bits), Expect = 1.1e-05, P = 1.1e-05
Identities = 27/59 (45%), Positives = 36/59 (61%)
Query: 4 KWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSSTTQGRLDSFFT-IRREEKRKA 61
KW PD +GLV +L DK F EDR+RNGA +L K + Q RL+ FF + + + KA
Sbjct: 302 KWEAPDIEGLVDFLVKDKGFNEDRVRNGAARLQKNLKTAQQSRLEGFFKPVAKTDAEKA 360
Score = 99 (39.9 bits), Expect = 1.7e-12, Sum P(2) = 1.7e-12
Identities = 17/29 (58%), Positives = 23/29 (79%)
Query: 201 EFIDLCILLGCDYCDSIRGIGPKRAIELL 229
+FIDLCILLGCDY + I +GP A++L+
Sbjct: 222 QFIDLCILLGCDYLEPIPKVGPNTALKLI 250
>UNIPROTKB|F5H1Y3 [details] [associations]
symbol:FEN1 "Flap endonuclease 1" species:9606 "Homo
sapiens" [GO:0000287 "magnesium ion binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0004527 "exonuclease
activity" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0006260 "DNA replication" evidence=IEA] [GO:0006281 "DNA
repair" evidence=IEA] [GO:0007613 "memory" evidence=IEA]
[GO:0030145 "manganese ion binding" evidence=IEA] [GO:0048256 "flap
endonuclease activity" evidence=IEA] InterPro:IPR006084
InterPro:IPR006085 InterPro:IPR019974 Pfam:PF00752 PRINTS:PR00853
PROSITE:PS00841 PROSITE:PS00842 SMART:SM00485 GO:GO:0000287
GO:GO:0003677 GO:GO:0006260 GO:GO:0006281 GO:GO:0030145
GO:GO:0004527 GO:GO:0090305 PANTHER:PTHR11081 GO:GO:0048256
HGNC:HGNC:3650 ChiTaRS:FEN1 EMBL:AP002380 IPI:IPI01009939
ProteinModelPortal:F5H1Y3 SMR:F5H1Y3 Ensembl:ENST00000535723
ArrayExpress:F5H1Y3 Bgee:F5H1Y3 Uniprot:F5H1Y3
Length = 165
Score = 348 (127.6 bits), Expect = 9.8e-32, P = 9.8e-32
Identities = 70/111 (63%), Positives = 88/111 (79%)
Query: 304 ELVADVAPSSIRES-------RKICIDASMSLYQFLIAVRSEGNQLMSVDGEPTSHLMGT 356
+L+ADVAPS+IRE+ RK+ IDASMS+YQFLIAVR G+ L + +GE TSHLMG
Sbjct: 8 KLIADVAPSAIRENDIKSYFGRKVAIDASMSIYQFLIAVRQGGDVLQNEEGETTSHLMGM 67
Query: 357 FYRTIRLVEHGLKPIYVFDGKPPTLKSGELNKRMEKREDAQKALAKAQEQG 407
FYRTIR++E+G+KP+YVFDGKPP LKSGEL KR E+R +A+K L +AQ G
Sbjct: 68 FYRTIRMMENGIKPVYVFDGKPPQLKSGELAKRSERRAEAEKQLQQAQAAG 118
>TAIR|locus:2013633 [details] [associations]
symbol:AT1G29630 species:3702 "Arabidopsis thaliana"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003824 "catalytic
activity" evidence=IEA] [GO:0004518 "nuclease activity"
evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM] [GO:0006281
"DNA repair" evidence=IEA;ISS] [GO:0016788 "hydrolase activity,
acting on ester bonds" evidence=IEA] [GO:0007062 "sister chromatid
cohesion" evidence=RCA] [GO:0031048 "chromatin silencing by small
RNA" evidence=RCA] [GO:0045132 "meiotic chromosome segregation"
evidence=RCA] InterPro:IPR006084 InterPro:IPR006085
InterPro:IPR006086 InterPro:IPR008918 InterPro:IPR019974
InterPro:IPR020045 Pfam:PF00752 Pfam:PF00867 PRINTS:PR00853
PROSITE:PS00841 PROSITE:PS00842 SMART:SM00279 SMART:SM00484
SMART:SM00485 EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005634
GO:GO:0046872 GO:GO:0003677 GO:GO:0006281 GO:GO:0004527
GO:GO:0090305 GO:GO:0004519 EMBL:AC068667 eggNOG:COG0258
PANTHER:PTHR11081 SUPFAM:SSF47807 EMBL:AY140055 IPI:IPI00532766
IPI:IPI00852240 PIR:E86419 RefSeq:NP_001077624.1 RefSeq:NP_174256.2
UniGene:At.40698 HSSP:P39748 ProteinModelPortal:Q8L6Z7 SMR:Q8L6Z7
PRIDE:Q8L6Z7 EnsemblPlants:AT1G29630.2 GeneID:839840
KEGG:ath:AT1G29630 TAIR:At1g29630 HOGENOM:HOG000064704
InParanoid:Q8L6Z7 KO:K10746 OMA:LEHEANG PhylomeDB:Q8L6Z7
ProtClustDB:CLSN2699050 Genevestigator:Q8L6Z7 Uniprot:Q8L6Z7
Length = 735
Score = 202 (76.2 bits), Expect = 7.8e-13, P = 7.8e-13
Identities = 78/283 (27%), Positives = 133/283 (46%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFGS-NILLRHMTFSEARKLPVQEFHLEKVL 119
AP EA+AQ A + +V A TED D + FG I+ + F + + K L
Sbjct: 147 APYEADAQMAFLAITKQVDAIITEDSDLIPFGCLRIIFKMDKFGHGVEFQASKLPKNKDL 206
Query: 120 EGMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEG 179
S + +++CIL GCDY S+ G+G KRA LI + +S +++++++ +VP
Sbjct: 207 SLSGFSSQMLLEMCILSGCDYLQSLPGMGLKRAHALITKFKSYDRVIKHLKYSTVSVPP- 265
Query: 180 WLYKEA--REL--FRHPEVADPETIEFIDLCILLGCDYCDSIRGIGPKRAIELLYSFIDL 235
LY+E+ R L F+H V DP + I LC + + + +GP ++
Sbjct: 266 -LYEESFKRALLTFKHQRVYDPNAEDIIHLCDISD-NLGEDSDFVGPSMPQDIAKG---- 319
Query: 236 CILLG-CDYCDSI----RGIGPKRAIELIKEHRSI--EKILENID--TKKYTVPEGWLYK 286
I LG D + + PK A++ I +S E + + +D +K + + + +
Sbjct: 320 -IALGQLDPFTQLPFQAESVTPKLAVDDISRPKSFKPETVKKKLDLPVQKNLLTKYFCFA 378
Query: 287 --EARELFRHPEIADPETIELVADVAPSSIRESRKICIDASMS 327
EA+ F+ P I+ P ++ D +PS I + +DA S
Sbjct: 379 SVEAKRKFKAPRIS-PMSLT-PTDESPS-IPDDNTPDLDALSS 418
>GENEDB_PFALCIPARUM|PF10_0080 [details] [associations]
symbol:PF10_0080 "endonuclease, putative"
species:5833 "Plasmodium falciparum" [GO:0005739 "mitochondrion"
evidence=ISS] InterPro:IPR006084 InterPro:IPR006086
InterPro:IPR008918 InterPro:IPR020045 Pfam:PF00867 PRINTS:PR00853
SMART:SM00279 GO:GO:0005739 GO:GO:0003677 GO:GO:0006281
GO:GO:0090305 GO:GO:0004519 EMBL:AE014185 PANTHER:PTHR11081
SUPFAM:SSF47807 HSSP:O29975 RefSeq:XP_001347365.1
ProteinModelPortal:Q8IJW1 EnsemblProtists:PF10_0080:mRNA
GeneID:810238 KEGG:pfa:PF10_0080 EuPathDB:PlasmoDB:PF3D7_1008200
HOGENOM:HOG000283088 ProtClustDB:CLSZ2431727 Uniprot:Q8IJW1
Length = 388
Score = 191 (72.3 bits), Expect = 3.4e-12, P = 3.4e-12
Identities = 42/111 (37%), Positives = 67/111 (60%)
Query: 64 EAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVLEGME 123
+AE +CA + + +D DAL FG+ L+R +T + R + + E++L +
Sbjct: 245 DAEKECAIQCSHERDIVVS-DDTDALAFGAPNLIRFITNKKKRHI----INKEELLNELN 299
Query: 124 LSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKY 174
+++E+FID CIL GCDY I GIGP +A E+IK++++IE LE+ KY
Sbjct: 300 INYEQFIDFCILSGCDYSAKIPGIGPVKAHEIIKKYKTIETFLESNAFNKY 350
Score = 127 (49.8 bits), Expect = 4.9e-05, P = 4.9e-05
Identities = 25/46 (54%), Positives = 32/46 (69%)
Query: 232 FIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKY 277
FID CIL GCDY I GIGP +A E+IK++++IE LE+ KY
Sbjct: 305 FIDFCILSGCDYSAKIPGIGPVKAHEIIKKYKTIETFLESNAFNKY 350
>UNIPROTKB|Q8IJW1 [details] [associations]
symbol:PF10_0080 "Endonuclease, putative" species:36329
"Plasmodium falciparum 3D7" [GO:0005739 "mitochondrion"
evidence=ISS] InterPro:IPR006084 InterPro:IPR006086
InterPro:IPR008918 InterPro:IPR020045 Pfam:PF00867 PRINTS:PR00853
SMART:SM00279 GO:GO:0005739 GO:GO:0003677 GO:GO:0006281
GO:GO:0090305 GO:GO:0004519 EMBL:AE014185 PANTHER:PTHR11081
SUPFAM:SSF47807 HSSP:O29975 RefSeq:XP_001347365.1
ProteinModelPortal:Q8IJW1 EnsemblProtists:PF10_0080:mRNA
GeneID:810238 KEGG:pfa:PF10_0080 EuPathDB:PlasmoDB:PF3D7_1008200
HOGENOM:HOG000283088 ProtClustDB:CLSZ2431727 Uniprot:Q8IJW1
Length = 388
Score = 191 (72.3 bits), Expect = 3.4e-12, P = 3.4e-12
Identities = 42/111 (37%), Positives = 67/111 (60%)
Query: 64 EAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVLEGME 123
+AE +CA + + +D DAL FG+ L+R +T + R + + E++L +
Sbjct: 245 DAEKECAIQCSHERDIVVS-DDTDALAFGAPNLIRFITNKKKRHI----INKEELLNELN 299
Query: 124 LSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKY 174
+++E+FID CIL GCDY I GIGP +A E+IK++++IE LE+ KY
Sbjct: 300 INYEQFIDFCILSGCDYSAKIPGIGPVKAHEIIKKYKTIETFLESNAFNKY 350
Score = 127 (49.8 bits), Expect = 4.9e-05, P = 4.9e-05
Identities = 25/46 (54%), Positives = 32/46 (69%)
Query: 232 FIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKY 277
FID CIL GCDY I GIGP +A E+IK++++IE LE+ KY
Sbjct: 305 FIDFCILSGCDYSAKIPGIGPVKAHEIIKKYKTIETFLESNAFNKY 350
>GENEDB_PFALCIPARUM|PFB0265c [details] [associations]
symbol:PFB0265c "DNA repair endonuclease,
putative" species:5833 "Plasmodium falciparum" [GO:0003684 "damaged
DNA binding" evidence=ISS] [GO:0004519 "endonuclease activity"
evidence=ISS] [GO:0005575 "cellular_component" evidence=ND]
InterPro:IPR006084 InterPro:IPR006085 InterPro:IPR006086
InterPro:IPR008918 InterPro:IPR019974 InterPro:IPR020045
Pfam:PF00752 Pfam:PF00867 PRINTS:PR00853 PROSITE:PS00841
SMART:SM00279 SMART:SM00484 SMART:SM00485 GO:GO:0005634
GO:GO:0003684 GO:GO:0006281 GO:GO:0004519 EMBL:AE001362
PANTHER:PTHR11081 SUPFAM:SSF47807 KO:K10846 HSSP:O29975 PIR:E71619
RefSeq:XP_001349570.1 ProteinModelPortal:O96154
EnsemblProtists:PFB0265c:mRNA GeneID:812652 KEGG:pfa:PFB0265c
EuPathDB:PlasmoDB:PF3D7_0206000 HOGENOM:HOG000284253
ProtClustDB:CLSZ2514755 Uniprot:O96154
Length = 1516
Score = 170 (64.9 bits), Expect = 8.8e-12, Sum P(2) = 8.8e-12
Identities = 41/132 (31%), Positives = 72/132 (54%)
Query: 60 KAPCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVL 119
++PCEAEAQC+ + A ++D D L F ++++ F+ +K V+ + + +
Sbjct: 1228 QSPCEAEAQCSYLNNKNYCDAIISDDSDVLVFSGKTVIKNF-FN--KKKTVEVYEKKAIE 1284
Query: 120 EGMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIE--KILENIDTKKYTVP 177
E + L EE I++ +L GCDY + GIG A+E+IK + E KIL++I + +
Sbjct: 1285 EKLGLYQEELINISLLCGCDYTIGVHGIGIVNALEIIKAFPNFEDLKILKDIVSNPFRKI 1344
Query: 178 EGWLYKEARELF 189
+ +Y E + F
Sbjct: 1345 DKNMYNEEIQQF 1356
Score = 77 (32.2 bits), Expect = 8.8e-12, Sum P(2) = 8.8e-12
Identities = 18/63 (28%), Positives = 34/63 (53%)
Query: 408 KLKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARST---TTQGRLDSFFTIRREEK 464
K +W PD + K+L N +E+++ N +L+ + T Q +++ FF + E+K
Sbjct: 1393 KFEWHVPDIKSITKFLHKTTNISEEKVLNVLNPILQKYNVNVRTYQSKIEDFFPLL-EKK 1451
Query: 465 RKS 467
RK+
Sbjct: 1452 RKT 1454
>UNIPROTKB|O96154 [details] [associations]
symbol:PFB0265c "DNA repair endonuclease, putative"
species:36329 "Plasmodium falciparum 3D7" [GO:0003684 "damaged DNA
binding" evidence=ISS] [GO:0004519 "endonuclease activity"
evidence=ISS] [GO:0005575 "cellular_component" evidence=ND]
InterPro:IPR006084 InterPro:IPR006085 InterPro:IPR006086
InterPro:IPR008918 InterPro:IPR019974 InterPro:IPR020045
Pfam:PF00752 Pfam:PF00867 PRINTS:PR00853 PROSITE:PS00841
SMART:SM00279 SMART:SM00484 SMART:SM00485 GO:GO:0005634
GO:GO:0003684 GO:GO:0006281 GO:GO:0004519 EMBL:AE001362
PANTHER:PTHR11081 SUPFAM:SSF47807 KO:K10846 HSSP:O29975 PIR:E71619
RefSeq:XP_001349570.1 ProteinModelPortal:O96154
EnsemblProtists:PFB0265c:mRNA GeneID:812652 KEGG:pfa:PFB0265c
EuPathDB:PlasmoDB:PF3D7_0206000 HOGENOM:HOG000284253
ProtClustDB:CLSZ2514755 Uniprot:O96154
Length = 1516
Score = 170 (64.9 bits), Expect = 8.8e-12, Sum P(2) = 8.8e-12
Identities = 41/132 (31%), Positives = 72/132 (54%)
Query: 60 KAPCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVL 119
++PCEAEAQC+ + A ++D D L F ++++ F+ +K V+ + + +
Sbjct: 1228 QSPCEAEAQCSYLNNKNYCDAIISDDSDVLVFSGKTVIKNF-FN--KKKTVEVYEKKAIE 1284
Query: 120 EGMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIE--KILENIDTKKYTVP 177
E + L EE I++ +L GCDY + GIG A+E+IK + E KIL++I + +
Sbjct: 1285 EKLGLYQEELINISLLCGCDYTIGVHGIGIVNALEIIKAFPNFEDLKILKDIVSNPFRKI 1344
Query: 178 EGWLYKEARELF 189
+ +Y E + F
Sbjct: 1345 DKNMYNEEIQQF 1356
Score = 77 (32.2 bits), Expect = 8.8e-12, Sum P(2) = 8.8e-12
Identities = 18/63 (28%), Positives = 34/63 (53%)
Query: 408 KLKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARST---TTQGRLDSFFTIRREEK 464
K +W PD + K+L N +E+++ N +L+ + T Q +++ FF + E+K
Sbjct: 1393 KFEWHVPDIKSITKFLHKTTNISEEKVLNVLNPILQKYNVNVRTYQSKIEDFFPLL-EKK 1451
Query: 465 RKS 467
RK+
Sbjct: 1452 RKT 1454
>CGD|CAL0003758 [details] [associations]
symbol:RAD2 species:5476 "Candida albicans" [GO:0000112
"nucleotide-excision repair factor 3 complex" evidence=IEA;ISA]
[GO:0000014 "single-stranded DNA specific endodeoxyribonuclease
activity" evidence=IEA;ISA] [GO:0006295 "nucleotide-excision
repair, DNA incision, 3'-to lesion" evidence=IEA;ISA] [GO:0034644
"cellular response to UV" evidence=IMP] [GO:0006366 "transcription
from RNA polymerase II promoter" evidence=IEA] InterPro:IPR001044
InterPro:IPR006084 InterPro:IPR006085 InterPro:IPR006086
InterPro:IPR008918 InterPro:IPR019974 InterPro:IPR020045
Pfam:PF00752 Pfam:PF00867 PRINTS:PR00066 PRINTS:PR00853
PROSITE:PS00842 SMART:SM00279 SMART:SM00484 SMART:SM00485
CGD:CAL0003758 GO:GO:0003697 GO:GO:0034644 GO:GO:0000014
eggNOG:COG0258 PANTHER:PTHR11081 SUPFAM:SSF47807 GO:GO:0006295
GO:GO:0000112 KO:K10846 EMBL:AACQ01000139 EMBL:AACQ01000138
RefSeq:XP_709963.1 RefSeq:XP_713000.1 ProteinModelPortal:Q59TL2
STRING:Q59TL2 GeneID:3645374 GeneID:3645402 KEGG:cal:CaO19.1324
KEGG:cal:CaO19.8904 Uniprot:Q59TL2
Length = 990
Score = 194 (73.4 bits), Expect = 9.1e-12, P = 9.1e-12
Identities = 46/116 (39%), Positives = 70/116 (60%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVL- 119
AP EAEAQCA + K G V T+D D FG + + ++M F + + + EF+L+ L
Sbjct: 747 APMEAEAQCAELYKIGLVDGIVTDDSDCFLFGGDKIYKNM-FDQKQYV---EFYLQDDLF 802
Query: 120 EGMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYT 175
M L+ + I+L +LLG DY + I+GIGP +A+E++ E ++EK E D K+T
Sbjct: 803 NKMALTQHKLIELALLLGSDYTEGIKGIGPVQAMEILAEFGNLEKFKEWFD--KHT 856
Score = 161 (61.7 bits), Expect = 1.2e-07, Sum P(2) = 1.2e-07
Identities = 35/78 (44%), Positives = 51/78 (65%)
Query: 318 RKICIDASMSLYQFLIAVRS-EGNQLMSVDGEPTSHLMGTFYRTIRLVEHGLKPIYVFDG 376
+K+ IDAS+ +YQFL A+R +GN L P+SH++G F R +L+ G+ PI+VFDG
Sbjct: 25 KKLAIDASIWIYQFLKAMRDKDGNSL------PSSHIIGFFRRICKLLYFGILPIFVFDG 78
Query: 377 KPPTLKSGELNKRMEKRE 394
P LK +N R ++RE
Sbjct: 79 GVPALKKQTINNRKQRRE 96
Score = 42 (19.8 bits), Expect = 1.2e-07, Sum P(2) = 1.2e-07
Identities = 17/60 (28%), Positives = 29/60 (48%)
Query: 386 LNKRMEKREDAQKALAKAQEQGKLKWSDPDEDGLVKYLCGDKNFAEDRIR--NGAKKLLK 443
++KR+ +D + AL K ++ L ED ++ D + AED R N K+ L+
Sbjct: 287 ISKRLAGDKDRKYALVKNEDGWTLALEGNSEDNPIQV---DSDEAEDITREVNSYKEDLR 343
>UNIPROTKB|Q59TL2 [details] [associations]
symbol:RAD2 "Putative uncharacterized protein RAD13"
species:237561 "Candida albicans SC5314" [GO:0000014
"single-stranded DNA specific endodeoxyribonuclease activity"
evidence=ISA] [GO:0000112 "nucleotide-excision repair factor 3
complex" evidence=ISA] [GO:0006295 "nucleotide-excision repair, DNA
incision, 3'-to lesion" evidence=ISA] [GO:0034644 "cellular
response to UV" evidence=IMP] InterPro:IPR001044 InterPro:IPR006084
InterPro:IPR006085 InterPro:IPR006086 InterPro:IPR008918
InterPro:IPR019974 InterPro:IPR020045 Pfam:PF00752 Pfam:PF00867
PRINTS:PR00066 PRINTS:PR00853 PROSITE:PS00842 SMART:SM00279
SMART:SM00484 SMART:SM00485 CGD:CAL0003758 GO:GO:0003697
GO:GO:0034644 GO:GO:0000014 eggNOG:COG0258 PANTHER:PTHR11081
SUPFAM:SSF47807 GO:GO:0006295 GO:GO:0000112 KO:K10846
EMBL:AACQ01000139 EMBL:AACQ01000138 RefSeq:XP_709963.1
RefSeq:XP_713000.1 ProteinModelPortal:Q59TL2 STRING:Q59TL2
GeneID:3645374 GeneID:3645402 KEGG:cal:CaO19.1324
KEGG:cal:CaO19.8904 Uniprot:Q59TL2
Length = 990
Score = 194 (73.4 bits), Expect = 9.1e-12, P = 9.1e-12
Identities = 46/116 (39%), Positives = 70/116 (60%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVL- 119
AP EAEAQCA + K G V T+D D FG + + ++M F + + + EF+L+ L
Sbjct: 747 APMEAEAQCAELYKIGLVDGIVTDDSDCFLFGGDKIYKNM-FDQKQYV---EFYLQDDLF 802
Query: 120 EGMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYT 175
M L+ + I+L +LLG DY + I+GIGP +A+E++ E ++EK E D K+T
Sbjct: 803 NKMALTQHKLIELALLLGSDYTEGIKGIGPVQAMEILAEFGNLEKFKEWFD--KHT 856
Score = 161 (61.7 bits), Expect = 1.2e-07, Sum P(2) = 1.2e-07
Identities = 35/78 (44%), Positives = 51/78 (65%)
Query: 318 RKICIDASMSLYQFLIAVRS-EGNQLMSVDGEPTSHLMGTFYRTIRLVEHGLKPIYVFDG 376
+K+ IDAS+ +YQFL A+R +GN L P+SH++G F R +L+ G+ PI+VFDG
Sbjct: 25 KKLAIDASIWIYQFLKAMRDKDGNSL------PSSHIIGFFRRICKLLYFGILPIFVFDG 78
Query: 377 KPPTLKSGELNKRMEKRE 394
P LK +N R ++RE
Sbjct: 79 GVPALKKQTINNRKQRRE 96
Score = 42 (19.8 bits), Expect = 1.2e-07, Sum P(2) = 1.2e-07
Identities = 17/60 (28%), Positives = 29/60 (48%)
Query: 386 LNKRMEKREDAQKALAKAQEQGKLKWSDPDEDGLVKYLCGDKNFAEDRIR--NGAKKLLK 443
++KR+ +D + AL K ++ L ED ++ D + AED R N K+ L+
Sbjct: 287 ISKRLAGDKDRKYALVKNEDGWTLALEGNSEDNPIQV---DSDEAEDITREVNSYKEDLR 343
>TAIR|locus:2194085 [details] [associations]
symbol:AT1G18090 species:3702 "Arabidopsis thaliana"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003824 "catalytic
activity" evidence=IEA] [GO:0004518 "nuclease activity"
evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM] [GO:0006281
"DNA repair" evidence=IEA;ISS] [GO:0016788 "hydrolase activity,
acting on ester bonds" evidence=IEA] InterPro:IPR006084
InterPro:IPR006085 InterPro:IPR006086 InterPro:IPR008918
InterPro:IPR019974 InterPro:IPR020045 Pfam:PF00752 Pfam:PF00867
PRINTS:PR00853 PROSITE:PS00842 SMART:SM00279 SMART:SM00484
SMART:SM00485 EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005634
GO:GO:0003677 GO:GO:0006281 GO:GO:0004527 GO:GO:0090305
eggNOG:COG0258 PANTHER:PTHR11081 SUPFAM:SSF47807 KO:K10746
UniGene:At.48205 UniGene:At.70260 EMBL:AY050420 EMBL:AY113038
IPI:IPI00541706 RefSeq:NP_564047.1 ProteinModelPortal:Q94A33
SMR:Q94A33 PaxDb:Q94A33 PRIDE:Q94A33 EnsemblPlants:AT1G18090.1
GeneID:838389 KEGG:ath:AT1G18090 TAIR:At1g18090
HOGENOM:HOG000131774 InParanoid:Q94A33 OMA:ETFETTE
ProtClustDB:CLSN2687850 Genevestigator:Q94A33 Uniprot:Q94A33
Length = 577
Score = 170 (64.9 bits), Expect = 1.0e-10, Sum P(2) = 1.0e-10
Identities = 50/178 (28%), Positives = 86/178 (48%)
Query: 32 AKKLLKARSSTTQGRLDSFFTIRREEKRK---APCEAEAQCAAM----VKAGKVYATATE 84
A +L + S T + + E + AP EA+AQ A + ++ G + A TE
Sbjct: 118 ATELFQRAVSVTSSMAHQLIQVLKSENVEFIVAPYEADAQLAYLSSLELEQGGIAAVITE 177
Query: 85 DMDALTFGSNILLRHMT-FSEARKLPVQE-FH-LEKVLEGMELSHEEFIDLCILLGCDYC 141
D D L +G ++ M + + +L + F +++ E F +C+L GCD+
Sbjct: 178 DSDLLAYGCKAVIFKMDRYGKGEELVLDNVFQAVDQKPSFQNFDQELFTAMCVLAGCDFL 237
Query: 142 DSIRGIGPKRAIELIKEHRSIEKILENIDTKK-YTVPEGWL--YKEARELFRHPEVAD 196
S+ G+G RA I +++S+E +L + TKK VP+ + + EA +F+H V D
Sbjct: 238 PSVPGVGISRAHAFISKYQSVELVLSFLKTKKGKLVPDDYSSSFTEAVSVFQHARVYD 295
Score = 121 (47.7 bits), Expect = 0.00042, P = 0.00042
Identities = 25/71 (35%), Positives = 42/71 (59%)
Query: 232 FIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKK-YTVPEGWL--YKEA 288
F +C+L GCD+ S+ G+G RA I +++S+E +L + TKK VP+ + + EA
Sbjct: 225 FTAMCVLAGCDFLPSVPGVGISRAHAFISKYQSVELVLSFLKTKKGKLVPDDYSSSFTEA 284
Query: 289 RELFRHPEIAD 299
+F+H + D
Sbjct: 285 VSVFQHARVYD 295
Score = 56 (24.8 bits), Expect = 1.0e-10, Sum P(2) = 1.0e-10
Identities = 23/101 (22%), Positives = 45/101 (44%)
Query: 257 ELIKEHRSIEKIL---ENIDTKK-YTVPEGWLYKEARELFRHPEIADPETIELVADVAPS 312
E+I+ R+ ++ + E I KK Y+ + LYK + R + P L+ D P
Sbjct: 383 EIIELKRTADEAMIDPEAIVKKKMYSKQDSDLYKLLAQPNRDQVVTRPSNPSLIPDNNPF 442
Query: 313 SIRESRKICID-ASMSLYQFLIAVRSEGNQLMSVDGEPTSH 352
IR++ +I ++ A + + + ++ + P SH
Sbjct: 443 KIRKTDEINLEIAEYGVQELADSFVTKSKAVDVASSSPNSH 483
>RGD|1309465 [details] [associations]
symbol:Exo1 "exonuclease 1" species:10116 "Rattus norvegicus"
[GO:0002455 "humoral immune response mediated by circulating
immunoglobulin" evidence=ISO] [GO:0003674 "molecular_function"
evidence=ND] [GO:0003677 "DNA binding" evidence=IEA;ISO]
[GO:0004518 "nuclease activity" evidence=IEA] [GO:0005575
"cellular_component" evidence=ND] [GO:0005634 "nucleus"
evidence=IEA;ISO] [GO:0006281 "DNA repair" evidence=IEA]
[GO:0006298 "mismatch repair" evidence=ISO] [GO:0006310 "DNA
recombination" evidence=ISO] [GO:0008150 "biological_process"
evidence=ND] [GO:0016446 "somatic hypermutation of immunoglobulin
genes" evidence=ISO] [GO:0035312 "5'-3' exodeoxyribonuclease
activity" evidence=ISO] [GO:0043566 "structure-specific DNA
binding" evidence=ISO] [GO:0045145 "single-stranded DNA specific
5'-3' exodeoxyribonuclease activity" evidence=ISO] [GO:0045190
"isotype switching" evidence=ISO] [GO:0048256 "flap endonuclease
activity" evidence=ISO] [GO:0051908 "double-stranded DNA specific
5'-3' exodeoxyribonuclease activity" evidence=ISO]
InterPro:IPR006084 InterPro:IPR006085 InterPro:IPR006086
InterPro:IPR008918 InterPro:IPR019974 InterPro:IPR020045
Pfam:PF00752 Pfam:PF00867 PRINTS:PR00853 PROSITE:PS00841
PROSITE:PS00842 SMART:SM00279 SMART:SM00484 SMART:SM00485
RGD:1309465 GO:GO:0005634 GO:GO:0002455 GO:GO:0006298 GO:GO:0090305
GO:GO:0045190 GeneTree:ENSGT00510000047676 PANTHER:PTHR11081
SUPFAM:SSF47807 GO:GO:0016446 OrthoDB:EOG4M91QT GO:GO:0048256
GO:GO:0045145 GO:GO:0051908 GO:GO:0043566 IPI:IPI00768759
Ensembl:ENSRNOT00000005314 UCSC:RGD:1309465 Uniprot:D3ZEB0
Length = 836
Score = 183 (69.5 bits), Expect = 1.2e-10, P = 1.2e-10
Identities = 72/275 (26%), Positives = 120/275 (43%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFG-SNILLRHMTFSEARKLPVQEFHLEKVL 119
AP EA+AQ A + KAG V A TED D L FG ++L+ F ++ + K L
Sbjct: 147 APYEADAQLAYLNKAGIVQAVITEDSDLLAFGCKKVILKMDQFGNGLEVDQARLGMCKQL 206
Query: 120 EGMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIK--EHRSIEKILENID---TKKY 174
G + E+F +CIL GCDY S+RGIG +A ++++ + I K+++ I
Sbjct: 207 -GDVFTEEKFRYMCILSGCDYLASLRGIGLAKACKVLRLANNPDIVKVIKKIGHYLKMNI 265
Query: 175 TVPEGWL--YKEARELFRHPEVADPETIEFIDLCILLGCDYCDSIRGIGPKRAIELLYSF 232
TVPE ++ + A F + V DP + I L Y D + A + +
Sbjct: 266 TVPEDYITGFIRANNTFLYQLVFDPIQRKLIPLNA-----YGDDVNPETLTYAGQYVNDS 320
Query: 233 IDLCILLG---CDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGWLYK-EA 288
+ L I LG + + I + P + H +K + + + + E
Sbjct: 321 VALQIALGNRDINTFEQIDDVSPDYTPAHSRSHSWNDKACQKSPVASSIWHKNYCPRLEV 380
Query: 289 RELFRHPEIAD-PETIELVADVAPSSIRESRKICI 322
+ P++ + P T+ L ++ + RK C+
Sbjct: 381 NSVSHAPQLKEKPSTVGLKQVISTKGLNLPRKPCV 415
>POMBASE|SPAC12G12.16c [details] [associations]
symbol:SPAC12G12.16c "Fen1 family nuclease, XP-G
family (predicted)" species:4896 "Schizosaccharomyces pombe"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0004518 "nuclease
activity" evidence=ISM] [GO:0004519 "endonuclease activity"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0006281
"DNA repair" evidence=ISM] [GO:0046872 "metal ion binding"
evidence=IEA] InterPro:IPR006084 InterPro:IPR006085
InterPro:IPR006086 InterPro:IPR008918 InterPro:IPR020045
Pfam:PF00752 Pfam:PF00867 PRINTS:PR00853 SMART:SM00279
SMART:SM00484 SMART:SM00485 PomBase:SPAC12G12.16c GO:GO:0005737
EMBL:CU329670 GO:GO:0046872 GO:GO:0003677 GO:GO:0006281
GO:GO:0004519 GO:GO:0004518 eggNOG:COG0258 PANTHER:PTHR11081
SUPFAM:SSF47807 PIR:T37913 RefSeq:NP_592882.1
ProteinModelPortal:Q09708 EnsemblFungi:SPAC12G12.16c.1
GeneID:2543216 KEGG:spo:SPAC12G12.16c OrthoDB:EOG4VT96S
NextBio:20804238 Uniprot:Q09708
Length = 496
Score = 179 (68.1 bits), Expect = 1.4e-10, P = 1.4e-10
Identities = 40/129 (31%), Positives = 74/129 (57%)
Query: 64 EAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVLEGME 123
EAEA +A+ + YA AT+D D L GS+++ + ++ LP+Q K+ + +
Sbjct: 300 EAEAFASAISQNNLAYAVATQDTDVLLLGSSMISNFLDLNDNFHLPLQIMDPRKIAQELN 359
Query: 124 LSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTK-KYTVPEGWLY 182
L+ + F D C++ G D+ I IGP RA++LI+ + + +L+ ++ + KY +P ++
Sbjct: 360 LTFDGFQDYCLMCGTDFTSRIPKIGPVRALKLIRYYGNAFDVLKALNVEEKYIIPTDYIK 419
Query: 183 K--EARELF 189
K A++LF
Sbjct: 420 KFLTAKKLF 428
>UNIPROTKB|F1S8P2 [details] [associations]
symbol:EXO1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0051908 "double-stranded DNA specific 5'-3'
exodeoxyribonuclease activity" evidence=IEA] [GO:0048256 "flap
endonuclease activity" evidence=IEA] [GO:0045190 "isotype
switching" evidence=IEA] [GO:0045145 "single-stranded DNA specific
5'-3' exodeoxyribonuclease activity" evidence=IEA] [GO:0043566
"structure-specific DNA binding" evidence=IEA] [GO:0016446 "somatic
hypermutation of immunoglobulin genes" evidence=IEA] [GO:0006298
"mismatch repair" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0002455 "humoral immune response mediated by circulating
immunoglobulin" evidence=IEA] InterPro:IPR006084 InterPro:IPR006085
InterPro:IPR006086 InterPro:IPR008918 InterPro:IPR019974
InterPro:IPR020045 Pfam:PF00752 Pfam:PF00867 PRINTS:PR00853
PROSITE:PS00841 PROSITE:PS00842 SMART:SM00279 SMART:SM00484
SMART:SM00485 GO:GO:0005634 GO:GO:0002455 GO:GO:0006298
GO:GO:0090305 GO:GO:0045190 GeneTree:ENSGT00510000047676
PANTHER:PTHR11081 SUPFAM:SSF47807 GO:GO:0016446 KO:K10746 CTD:9156
GO:GO:0048256 GO:GO:0045145 GO:GO:0051908 OMA:EPIHVRK GO:GO:0043566
EMBL:FP236465 EMBL:FP236767 RefSeq:XP_003130603.3
Ensembl:ENSSSCT00000011887 GeneID:100512301 KEGG:ssc:100512301
Uniprot:F1S8P2
Length = 836
Score = 186 (70.5 bits), Expect = 1.8e-10, Sum P(2) = 1.8e-10
Identities = 55/154 (35%), Positives = 80/154 (51%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFG-SNILLRHMTFSEARKLPVQEFHLEKVL 119
AP EA+AQ A + KAG V A TED D L FG ++L+ F L V + L K
Sbjct: 147 APYEADAQLAYLNKAGIVQAIITEDSDLLAFGCKKVILKMDQFGNG--LEVDQARLGKCK 204
Query: 120 E-GMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIK--EHRSIEKILENID---TKK 173
+ G + E+F +CIL GCDY S+RGIG +A ++++ + I K+++ I
Sbjct: 205 QLGDVFTEEKFRYMCILSGCDYLSSLRGIGLAKACKVLRLANNPDIVKVIKKIGHYLKMN 264
Query: 174 YTVPEGWL--YKEARELFRHPEVADPETIEFIDL 205
TVPE ++ + A F + V DP + I L
Sbjct: 265 ITVPEDYIEGFIRANNTFLYQLVFDPINRKLIPL 298
Score = 41 (19.5 bits), Expect = 1.8e-10, Sum P(2) = 1.8e-10
Identities = 23/98 (23%), Positives = 37/98 (37%)
Query: 367 GLKPIYVFDGKPPTLKSGELNK-RMEKREDAQKALAKAQEQGKLKWSDPDEDGLVKYLCG 425
G+K + G KS + + R E+ +A LA+ K +G K L
Sbjct: 398 GIKQVISTKGLNLPRKSSSIKRPRSEELSEAD-LLAQYSTSFTKKTKKNSCEGN-KSLNS 455
Query: 426 DKNFAEDRIRNGAKKLLKARSTTTQGRLDSFFTIRREE 463
+ F D + A K + TT+ + F + EE
Sbjct: 456 SELFMPDPVDEAATKKSLSTPPTTRNKFAKFLQRKNEE 493
>UNIPROTKB|E1BF15 [details] [associations]
symbol:EXO1 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0051908 "double-stranded DNA specific 5'-3'
exodeoxyribonuclease activity" evidence=IEA] [GO:0048256 "flap
endonuclease activity" evidence=IEA] [GO:0045190 "isotype
switching" evidence=IEA] [GO:0045145 "single-stranded DNA specific
5'-3' exodeoxyribonuclease activity" evidence=IEA] [GO:0043566
"structure-specific DNA binding" evidence=IEA] [GO:0016446 "somatic
hypermutation of immunoglobulin genes" evidence=IEA] [GO:0006298
"mismatch repair" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0002455 "humoral immune response mediated by circulating
immunoglobulin" evidence=IEA] InterPro:IPR006084 InterPro:IPR006085
InterPro:IPR006086 InterPro:IPR008918 InterPro:IPR019974
InterPro:IPR020045 Pfam:PF00752 Pfam:PF00867 PRINTS:PR00853
PROSITE:PS00841 PROSITE:PS00842 SMART:SM00279 SMART:SM00484
SMART:SM00485 GO:GO:0005634 GO:GO:0002455 GO:GO:0006298
GO:GO:0090305 GO:GO:0045190 GeneTree:ENSGT00510000047676
PANTHER:PTHR11081 SUPFAM:SSF47807 GO:GO:0016446 KO:K10746 CTD:9156
GO:GO:0048256 GO:GO:0045145 GO:GO:0051908 OMA:EPIHVRK GO:GO:0043566
EMBL:DAAA02042804 IPI:IPI00698763 RefSeq:XP_002694001.1
UniGene:Bt.62135 Ensembl:ENSBTAT00000012365 GeneID:506390
KEGG:bta:506390 NextBio:20867588 Uniprot:E1BF15
Length = 835
Score = 183 (69.5 bits), Expect = 1.9e-10, Sum P(2) = 1.9e-10
Identities = 54/153 (35%), Positives = 78/153 (50%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFG-SNILLRHMTFSEARKLPVQEFHLEKVL 119
AP EA+AQ A + KAG V A TED D L FG ++L+ F ++ + K L
Sbjct: 147 APYEADAQLAYLNKAGIVQAVITEDSDLLAFGCKKVILKMDQFGNGLEVDQARLGMCKQL 206
Query: 120 EGMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIK--EHRSIEKILENID---TKKY 174
G + E+F +CIL GCDY S+RGIG +A +L++ + I K++ I
Sbjct: 207 -GDVFTEEKFRYMCILSGCDYLSSLRGIGLAKACKLLRLANNPDILKVVRKIGHYLKMNI 265
Query: 175 TVPEGWL--YKEARELFRHPEVADPETIEFIDL 205
TVPE ++ + A F + V DP + I L
Sbjct: 266 TVPEDYIKGFIRANNTFLYQLVFDPIKRKLIPL 298
Score = 44 (20.5 bits), Expect = 1.9e-10, Sum P(2) = 1.9e-10
Identities = 22/78 (28%), Positives = 37/78 (47%)
Query: 246 SIRGIGPKRAIELIKEHRSIEKILEN--ID------TKKYTVP--EGWLYKEARELFRHP 295
SI+G+ R ++K RS E++ E+ +D TKK EG + ELF P
Sbjct: 404 SIKGLNLPRKSSIVKRPRS-EELSEDDMLDQYSTSFTKKIKKNSCEGNKSLNSSELFT-P 461
Query: 296 EIADPETIELVADVAPSS 313
++ D T++ P++
Sbjct: 462 DLVDGTTVKKSLSTPPTT 479
Score = 37 (18.1 bits), Expect = 1.0e-09, Sum P(2) = 1.0e-09
Identities = 10/81 (12%), Positives = 34/81 (41%)
Query: 248 RGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGWLYKEARELFRHPEIADPETIELVA 307
R P+R ++++ + +++ + K+ +G + + P + +++
Sbjct: 373 RNYCPRRELDIVSDTTKVKENPSTVGIKQVISIKGLNLPRKSSIVKRPRSEELSEDDMLD 432
Query: 308 DVAPSSIRESRKICIDASMSL 328
+ S ++ +K + + SL
Sbjct: 433 QYSTSFTKKIKKNSCEGNKSL 453
>UNIPROTKB|Q9W6K2 [details] [associations]
symbol:exo1 "Exonuclease 1" species:8355 "Xenopus laevis"
[GO:0005634 "nucleus" evidence=ISS] [GO:0006298 "mismatch repair"
evidence=ISS] [GO:0006310 "DNA recombination" evidence=ISS]
[GO:0045145 "single-stranded DNA specific 5'-3'
exodeoxyribonuclease activity" evidence=ISS] [GO:0048256 "flap
endonuclease activity" evidence=ISS] InterPro:IPR006084
InterPro:IPR006085 InterPro:IPR006086 InterPro:IPR008918
InterPro:IPR019974 InterPro:IPR020045 Pfam:PF00752 Pfam:PF00867
PRINTS:PR00853 PROSITE:PS00841 PROSITE:PS00842 SMART:SM00279
SMART:SM00484 SMART:SM00485 GO:GO:0005634 GO:GO:0046872
GO:GO:0003677 GO:GO:0006298 GO:GO:0006310 PANTHER:PTHR11081
SUPFAM:SSF47807 KO:K10746 CTD:9156 HOVERGEN:HBG081488 GO:GO:0048256
GO:GO:0045145 EMBL:AF134570 EMBL:BC084102 RefSeq:NP_001083827.1
UniGene:Xl.489 ProteinModelPortal:Q9W6K2 GeneID:399140
KEGG:xla:399140 Xenbase:XB-GENE-982081 Uniprot:Q9W6K2
Length = 734
Score = 180 (68.4 bits), Expect = 2.0e-10, P = 2.0e-10
Identities = 53/153 (34%), Positives = 77/153 (50%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFG-SNILLRHMTFSEARKLPVQEFHLEKVL 119
AP EA++Q A + K A TED D L FG +LL+ F ++ F + + L
Sbjct: 147 APYEADSQLAYLNKNDFAEAIITEDSDLLAFGCKKVLLKMDKFGNGLEIDQARFGMCRSL 206
Query: 120 EGMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIK--EHRSIEKILENIDT---KKY 174
G + E+F +CIL GCDY SI GIG +A +L+K + I K+++ I
Sbjct: 207 -GDVFTEEKFRYMCILSGCDYLPSIHGIGLAKACKLLKVANNPDITKVIQKIGQYLKTNI 265
Query: 175 TVPEGWL--YKEARELFRHPEVADPETIEFIDL 205
TVPEG++ + A F + V DP + I L
Sbjct: 266 TVPEGYIEGFLRANNTFLYQLVFDPVERKLIPL 298
>MGI|MGI:1349427 [details] [associations]
symbol:Exo1 "exonuclease 1" species:10090 "Mus musculus"
[GO:0002455 "humoral immune response mediated by circulating
immunoglobulin" evidence=IMP] [GO:0003677 "DNA binding"
evidence=ISO] [GO:0003824 "catalytic activity" evidence=IEA]
[GO:0004518 "nuclease activity" evidence=IEA] [GO:0004519
"endonuclease activity" evidence=IEA] [GO:0004527 "exonuclease
activity" evidence=IEA] [GO:0005634 "nucleus" evidence=ISO]
[GO:0006139 "nucleobase-containing compound metabolic process"
evidence=ISA] [GO:0006281 "DNA repair" evidence=IEA] [GO:0006298
"mismatch repair" evidence=ISO] [GO:0006310 "DNA recombination"
evidence=ISO] [GO:0006974 "response to DNA damage stimulus"
evidence=IEA] [GO:0007126 "meiosis" evidence=IEA] [GO:0008409
"5'-3' exonuclease activity" evidence=ISA] [GO:0016446 "somatic
hypermutation of immunoglobulin genes" evidence=IMP] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0016788 "hydrolase activity,
acting on ester bonds" evidence=IEA] [GO:0035312 "5'-3'
exodeoxyribonuclease activity" evidence=ISO] [GO:0043566
"structure-specific DNA binding" evidence=IDA] [GO:0045145
"single-stranded DNA specific 5'-3' exodeoxyribonuclease activity"
evidence=ISO] [GO:0045190 "isotype switching" evidence=IMP]
[GO:0046872 "metal ion binding" evidence=IEA] [GO:0048256 "flap
endonuclease activity" evidence=ISO] [GO:0051908 "double-stranded
DNA specific 5'-3' exodeoxyribonuclease activity" evidence=ISO]
InterPro:IPR006084 InterPro:IPR006085 InterPro:IPR006086
InterPro:IPR008918 InterPro:IPR019974 InterPro:IPR020045
Pfam:PF00752 Pfam:PF00867 PRINTS:PR00853 PROSITE:PS00841
PROSITE:PS00842 SMART:SM00279 SMART:SM00484 SMART:SM00485
MGI:MGI:1349427 GO:GO:0005634 GO:GO:0007126 GO:GO:0002455
GO:GO:0046872 GO:GO:0006298 GO:GO:0045190 eggNOG:COG0258
GeneTree:ENSGT00510000047676 PANTHER:PTHR11081 SUPFAM:SSF47807
GO:GO:0016446 KO:K10746 CTD:9156 HOGENOM:HOG000112413
HOVERGEN:HBG081488 OrthoDB:EOG4M91QT GO:GO:0048256 GO:GO:0045145
GO:GO:0051908 OMA:EPIHVRK GO:GO:0043566 EMBL:AJ238213 EMBL:AK028728
EMBL:AK166425 EMBL:BC006671 IPI:IPI00331190 RefSeq:NP_036142.2
UniGene:Mm.283046 ProteinModelPortal:Q9QZ11 SMR:Q9QZ11
STRING:Q9QZ11 PhosphoSite:Q9QZ11 PRIDE:Q9QZ11
Ensembl:ENSMUST00000039725 GeneID:26909 KEGG:mmu:26909
UCSC:uc007dtu.2 InParanoid:Q9QZ11 NextBio:304777 Bgee:Q9QZ11
CleanEx:MM_EXO1 Genevestigator:Q9QZ11 GermOnline:ENSMUSG00000039748
Uniprot:Q9QZ11
Length = 837
Score = 180 (68.4 bits), Expect = 2.5e-10, P = 2.5e-10
Identities = 51/145 (35%), Positives = 76/145 (52%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFG-SNILLRHMTFSEARKLPVQEFHLEKVL 119
AP EA+AQ A + KAG V A TED D L FG ++L+ F ++ + K L
Sbjct: 147 APYEADAQLAYLNKAGIVQAVITEDSDLLAFGCKKVILKMDQFGNGLEVDQARLGMCKQL 206
Query: 120 EGMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIK--EHRSIEKILENID---TKKY 174
G + E+F +CIL GCDY S+RGIG +A ++++ + I K+++ I
Sbjct: 207 -GDVFTEEKFRYMCILSGCDYLASLRGIGLAKACKVLRLANNPDIVKVIKKIGHYLRMNI 265
Query: 175 TVPEGWL--YKEARELFRHPEVADP 197
TVPE ++ + A F + V DP
Sbjct: 266 TVPEDYITGFIRANNTFLYQLVFDP 290
>DICTYBASE|DDB_G0291570 [details] [associations]
symbol:exo1 "5'3'-exonuclease N- and
I-domain-containing protein" species:44689 "Dictyostelium
discoideum" [GO:0090305 "nucleic acid phosphodiester bond
hydrolysis" evidence=IEA] [GO:0006281 "DNA repair"
evidence=IEA;ISS] [GO:0004518 "nuclease activity" evidence=IEA]
[GO:0003824 "catalytic activity" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0008409 "5'-3' exonuclease activity"
evidence=ISS] [GO:0006310 "DNA recombination" evidence=ISS]
[GO:0005634 "nucleus" evidence=IEA;ISS] [GO:0046872 "metal ion
binding" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0006974 "response to DNA damage stimulus"
evidence=IEA] [GO:0004527 "exonuclease activity" evidence=IEA]
[GO:0004519 "endonuclease activity" evidence=IEA]
InterPro:IPR006084 InterPro:IPR006085 InterPro:IPR006086
InterPro:IPR008918 InterPro:IPR019734 InterPro:IPR020045
Pfam:PF00752 Pfam:PF00867 PRINTS:PR00853 SMART:SM00279
SMART:SM00484 SMART:SM00485 dictyBase:DDB_G0291570 GO:GO:0005634
EMBL:AAFI02000177 GenomeReviews:CM000155_GR GO:GO:0046872
GO:GO:0003677 GO:GO:0006281 GO:GO:0006310 GO:GO:0004519
GO:GO:0008409 eggNOG:COG0258 PANTHER:PTHR11081 SUPFAM:SSF47807
KO:K10746 RefSeq:XP_635308.1 ProteinModelPortal:Q54ED2
EnsemblProtists:DDB0232997 GeneID:8628252 KEGG:ddi:DDB_G0291570
OMA:KSQANIC Uniprot:Q54ED2
Length = 1046
Score = 181 (68.8 bits), Expect = 2.6e-10, P = 2.6e-10
Identities = 45/143 (31%), Positives = 77/143 (53%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFGS-NILLRHMTFSEARKLPVQEFHLEKV- 118
AP EA+AQ + G+V A TED D + FG+ +I+ + + A+++ ++ K
Sbjct: 147 APYEADAQLTYLSITGQVDAIITEDSDLVAFGATHIIFKMDKYGYAQEIKTEDLGSCKKD 206
Query: 119 -LEGMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVP 177
+ ++ + +CIL GCDY S+ G+G K + +L+K+HR IEK+ + + +K
Sbjct: 207 GYDFIDFNQTMLRQMCILSGCDYLPSLSGMGLKTSFKLLKQHRDIEKVFKYLKREKSNFS 266
Query: 178 EGW---LYKEARELFRHPEVADP 197
+ + YK A F+H V DP
Sbjct: 267 QEYEQQFYK-ADFTFKHQRVFDP 288
Score = 129 (50.5 bits), Expect = 0.00012, P = 0.00012
Identities = 30/87 (34%), Positives = 49/87 (56%)
Query: 235 LCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGW---LYKEAREL 291
+CIL GCDY S+ G+G K + +L+K+HR IEK+ + + +K + + YK A
Sbjct: 221 MCILSGCDYLPSLSGMGLKTSFKLLKQHRDIEKVFKYLKREKSNFSQEYEQQFYK-ADFT 279
Query: 292 FRHPEIADPETIELVADVAPSSIRESR 318
F+H + DP + L + +I +SR
Sbjct: 280 FKHQRVFDPVSRILTTLLPLPTIIDSR 306
>UNIPROTKB|Q9UQ84 [details] [associations]
symbol:EXO1 "Exonuclease 1" species:9606 "Homo sapiens"
[GO:0007126 "meiosis" evidence=IEA] [GO:0046872 "metal ion binding"
evidence=IEA] [GO:0002455 "humoral immune response mediated by
circulating immunoglobulin" evidence=IEA] [GO:0016446 "somatic
hypermutation of immunoglobulin genes" evidence=IEA] [GO:0043566
"structure-specific DNA binding" evidence=IEA] [GO:0045190 "isotype
switching" evidence=IEA] [GO:0051908 "double-stranded DNA specific
5'-3' exodeoxyribonuclease activity" evidence=IDA] [GO:0035312
"5'-3' exodeoxyribonuclease activity" evidence=IDA] [GO:0045145
"single-stranded DNA specific 5'-3' exodeoxyribonuclease activity"
evidence=IDA] [GO:0048256 "flap endonuclease activity"
evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0006298 "mismatch repair" evidence=ISS;IDA;IMP;IPI] [GO:0008409
"5'-3' exonuclease activity" evidence=ISS] [GO:0006310 "DNA
recombination" evidence=IGI] [GO:0005634 "nucleus" evidence=IDA]
[GO:0003677 "DNA binding" evidence=IDA] [GO:0004527 "exonuclease
activity" evidence=TAS] [GO:0006281 "DNA repair" evidence=TAS]
[GO:0004523 "ribonuclease H activity" evidence=TAS]
InterPro:IPR006084 InterPro:IPR006085 InterPro:IPR006086
InterPro:IPR008918 InterPro:IPR019974 InterPro:IPR020045
Pfam:PF00752 Pfam:PF00867 PRINTS:PR00853 PROSITE:PS00841
PROSITE:PS00842 SMART:SM00279 SMART:SM00484 SMART:SM00485
EMBL:AF042282 GO:GO:0005634 GO:GO:0007126 GO:GO:0002455
GO:GO:0046872 GO:GO:0003677 GO:GO:0006298 GO:GO:0006310
GO:GO:0045190 GO:GO:0004523 eggNOG:COG0258 PANTHER:PTHR11081
SUPFAM:SSF47807 GO:GO:0016446 BRENDA:3.1.11.1 KO:K10746 CTD:9156
HOVERGEN:HBG081488 OrthoDB:EOG4M91QT GO:GO:0048256 GO:GO:0045145
GO:GO:0051908 EMBL:AF084974 EMBL:AF091740 EMBL:AF091754
EMBL:AF091742 EMBL:AF091743 EMBL:AF091744 EMBL:AF091745
EMBL:AF091746 EMBL:AF091747 EMBL:AF091748 EMBL:AF091749
EMBL:AF091750 EMBL:AF091751 EMBL:AF091752 EMBL:AF091753
EMBL:AC004783 EMBL:AF060479 EMBL:AF549168 EMBL:AL365366
EMBL:BC007491 EMBL:AL080139 IPI:IPI00219173 IPI:IPI00556476
PIR:T12524 RefSeq:NP_003677.4 RefSeq:NP_006018.4 RefSeq:NP_569082.2
UniGene:Hs.498248 PDB:3QE9 PDB:3QEA PDB:3QEB PDBsum:3QE9
PDBsum:3QEA PDBsum:3QEB ProteinModelPortal:Q9UQ84 SMR:Q9UQ84
IntAct:Q9UQ84 STRING:Q9UQ84 PhosphoSite:Q9UQ84 DMDM:85700954
PaxDb:Q9UQ84 PRIDE:Q9UQ84 DNASU:9156 Ensembl:ENST00000348581
Ensembl:ENST00000366548 Ensembl:ENST00000518483 GeneID:9156
KEGG:hsa:9156 UCSC:uc001hzh.3 UCSC:uc021plk.1 GeneCards:GC01P242011
H-InvDB:HIX0022634 HGNC:HGNC:3511 MIM:606063 neXtProt:NX_Q9UQ84
PharmGKB:PA27923 InParanoid:Q9UQ84 OMA:EPIHVRK PhylomeDB:Q9UQ84
EvolutionaryTrace:Q9UQ84 GenomeRNAi:9156 NextBio:34349
ArrayExpress:Q9UQ84 Bgee:Q9UQ84 CleanEx:HS_EXO1
Genevestigator:Q9UQ84 GermOnline:ENSG00000174371 GO:GO:0043566
Uniprot:Q9UQ84
Length = 846
Score = 180 (68.4 bits), Expect = 5.4e-10, Sum P(2) = 5.4e-10
Identities = 52/153 (33%), Positives = 79/153 (51%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFG-SNILLRHMTFSEARKLPVQEFHLEKVL 119
AP EA+AQ A + KAG V A TED D L FG ++L+ F ++ + + L
Sbjct: 147 APYEADAQLAYLNKAGIVQAIITEDSDLLAFGCKKVILKMDQFGNGLEIDQARLGMCRQL 206
Query: 120 EGMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIK--EHRSIEKILENID---TKKY 174
G + E+F +CIL GCDY S+RGIG +A ++++ + I K+++ I
Sbjct: 207 -GDVFTEEKFRYMCILSGCDYLSSLRGIGLAKACKVLRLANNPDIVKVIKKIGHYLKMNI 265
Query: 175 TVPEGWL--YKEARELFRHPEVADPETIEFIDL 205
TVPE ++ + A F + V DP + I L
Sbjct: 266 TVPEDYINGFIRANNTFLYQLVFDPIKRKLIPL 298
Score = 43 (20.2 bits), Expect = 5.4e-10, Sum P(2) = 5.4e-10
Identities = 10/21 (47%), Positives = 14/21 (66%)
Query: 247 IRGIGPKRAIELIKEHRSIEK 267
I+ +GP RA L K+ SI+K
Sbjct: 755 IKPLGPARASGLSKKPASIQK 775
>UNIPROTKB|E2QWL7 [details] [associations]
symbol:EXO1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0051908 "double-stranded DNA specific 5'-3'
exodeoxyribonuclease activity" evidence=IEA] [GO:0048256 "flap
endonuclease activity" evidence=IEA] [GO:0045190 "isotype
switching" evidence=IEA] [GO:0045145 "single-stranded DNA specific
5'-3' exodeoxyribonuclease activity" evidence=IEA] [GO:0043566
"structure-specific DNA binding" evidence=IEA] [GO:0016446 "somatic
hypermutation of immunoglobulin genes" evidence=IEA] [GO:0006298
"mismatch repair" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0002455 "humoral immune response mediated by circulating
immunoglobulin" evidence=IEA] InterPro:IPR006084 InterPro:IPR006085
InterPro:IPR006086 InterPro:IPR008918 InterPro:IPR019974
InterPro:IPR020045 Pfam:PF00752 Pfam:PF00867 PRINTS:PR00853
PROSITE:PS00841 PROSITE:PS00842 SMART:SM00279 SMART:SM00484
SMART:SM00485 GO:GO:0005634 GO:GO:0002455 GO:GO:0006298
GO:GO:0090305 GO:GO:0045190 GeneTree:ENSGT00510000047676
PANTHER:PTHR11081 SUPFAM:SSF47807 GO:GO:0016446 KO:K10746
GO:GO:0048256 GO:GO:0045145 GO:GO:0051908 OMA:EPIHVRK GO:GO:0043566
EMBL:AAEX03005244 RefSeq:XP_003639234.1 ProteinModelPortal:E2QWL7
Ensembl:ENSCAFT00000024978 GeneID:100855525 KEGG:cfa:100855525
NextBio:20863405 Uniprot:E2QWL7
Length = 836
Score = 181 (68.8 bits), Expect = 1.0e-09, Sum P(2) = 1.0e-09
Identities = 52/153 (33%), Positives = 79/153 (51%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFG-SNILLRHMTFSEARKLPVQEFHLEKVL 119
AP EA+AQ A + KAG V A TED D L FG ++L+ F ++ + + L
Sbjct: 147 APYEADAQLAYLNKAGIVQAIITEDSDLLAFGCKKVILKMDQFGNGLEIDQARLGMCRQL 206
Query: 120 EGMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIK--EHRSIEKILENID---TKKY 174
G + E+F +CIL GCDY S+RGIG +A ++++ + I K+++ I
Sbjct: 207 -GDVFTEEKFRYMCILSGCDYLSSLRGIGLAKACKVLRLANNPDIVKVIKKIGHYLKMNI 265
Query: 175 TVPEGWL--YKEARELFRHPEVADPETIEFIDL 205
TVPE ++ + A F + V DP + I L
Sbjct: 266 TVPEDYIKGFIRANNTFLYQLVFDPVRRKLIPL 298
Score = 39 (18.8 bits), Expect = 1.0e-09, Sum P(2) = 1.0e-09
Identities = 21/94 (22%), Positives = 41/94 (43%)
Query: 247 IRGIGPKRAIELIKEHRSIEKI----LENIDTKKYTVPEGWL-YKEARELFRHPEIADPE 301
I+ + P RA L K+ SI+K EN + + E W + ++ + P P+
Sbjct: 743 IKPLVPARASGLSKKPSSIQKRNHHDAENRPGLQIKINELWKNFGFKKDSEKLPSCKKPD 802
Query: 302 TIELVAD---VAPSSIRE--SRKICIDASMSLYQ 330
+ V D + P + + ++ CI +++Q
Sbjct: 803 PLSPVKDNIQLTPEAEEDIFNKPECIHVQRAIFQ 836
>UNIPROTKB|G4NE19 [details] [associations]
symbol:MGG_00841 "Exonuclease 1" species:242507
"Magnaporthe oryzae 70-15" [GO:0005575 "cellular_component"
evidence=ND] InterPro:IPR006084 InterPro:IPR006085
InterPro:IPR006086 InterPro:IPR008918 InterPro:IPR020045
Pfam:PF00752 Pfam:PF00867 PRINTS:PR00853 SMART:SM00279
SMART:SM00484 SMART:SM00485 EMBL:CM001235 GO:GO:0003677
GO:GO:0006281 GO:GO:0004527 GO:GO:0090305 PANTHER:PTHR11081
SUPFAM:SSF47807 KO:K10746 RefSeq:XP_003718138.1
ProteinModelPortal:G4NE19 EnsemblFungi:MGG_00841T0 GeneID:2674671
KEGG:mgr:MGG_00841 Uniprot:G4NE19
Length = 780
Score = 178 (67.7 bits), Expect = 1.1e-09, Sum P(2) = 1.1e-09
Identities = 45/147 (30%), Positives = 75/147 (51%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMT-FSEARKLPVQEFHLEKVL 119
AP EA+AQ + + G V +ED D L FG+ LL + + ++ +EF + +
Sbjct: 147 APYEADAQMVYLERNGYVSGIISEDSDLLVFGAKRLLTKLDQHGQCIEVNRREFCAVREI 206
Query: 120 EGMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTK-KYTVPE 178
+ EF + I GCDY D I +G K A +I++H++ EK++ + + K+ + E
Sbjct: 207 SLTGWTDAEFRQMAIFSGCDYLDGINKMGLKTAYRMIRKHKTPEKVIRQLQFEGKHKISE 266
Query: 179 GWL--YKEARELFRHPEVADPETIEFI 203
+L +K+A F H V PE E +
Sbjct: 267 NYLAAFKQAELTFMHQRVFCPEKQELV 293
Score = 132 (51.5 bits), Expect = 4.0e-05, P = 4.0e-05
Identities = 29/85 (34%), Positives = 47/85 (55%)
Query: 232 FIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTK-KYTVPEGWL--YKEA 288
F + I GCDY D I +G K A +I++H++ EK++ + + K+ + E +L +K+A
Sbjct: 216 FRQMAIFSGCDYLDGINKMGLKTAYRMIRKHKTPEKVIRQLQFEGKHKISENYLAAFKQA 275
Query: 289 RELFRHPEIADPETIELVADVAPSS 313
F H + PE ELV P+S
Sbjct: 276 ELTFMHQRVFCPEKQELVLLTEPTS 300
Score = 41 (19.5 bits), Expect = 1.1e-09, Sum P(2) = 1.1e-09
Identities = 12/28 (42%), Positives = 16/28 (57%)
Query: 301 ETIELVADVAPSSIRESRKICIDASMSL 328
+T+E+ A S IRES I DA + L
Sbjct: 583 DTVEIEVP-ASSPIRESVSIEADAELDL 609
>ZFIN|ZDB-GENE-050327-28 [details] [associations]
symbol:ercc5 "excision repair cross-complementing
rodent repair deficiency, complementation group 5 (xeroderma
pigmentosum, complementation group G (Cockayne syndrome))"
species:7955 "Danio rerio" [GO:0016788 "hydrolase activity, acting
on ester bonds" evidence=IEA] [GO:0003697 "single-stranded DNA
binding" evidence=IEA] [GO:0004518 "nuclease activity"
evidence=IEA] [GO:0004519 "endonuclease activity" evidence=IEA]
[GO:0006281 "DNA repair" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003824 "catalytic activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0006289
"nucleotide-excision repair" evidence=IEA] InterPro:IPR001044
InterPro:IPR006084 InterPro:IPR006085 InterPro:IPR006086
InterPro:IPR008918 InterPro:IPR019974 InterPro:IPR020045
Pfam:PF00752 Pfam:PF00867 PRINTS:PR00066 PRINTS:PR00853
PROSITE:PS00842 SMART:SM00279 SMART:SM00484 SMART:SM00485
ZFIN:ZDB-GENE-050327-28 GO:GO:0005634 GO:GO:0003697 GO:GO:0090305
GO:GO:0004519 GO:GO:0006289 PANTHER:PTHR11081 SUPFAM:SSF47807
PANTHER:PTHR11081:SF1 GeneTree:ENSGT00640000091542 EMBL:CU571081
EMBL:CU855897 IPI:IPI00997036 Ensembl:ENSDART00000144406
Bgee:F1QJS3 Uniprot:F1QJS3
Length = 1010
Score = 147 (56.8 bits), Expect = 2.8e-09, Sum P(2) = 2.8e-09
Identities = 44/148 (29%), Positives = 75/148 (50%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVLE 120
AP EAEAQCAA+ + + + T T+D D FG + R+ F++ + V+ + + +
Sbjct: 676 APMEAEAQCAALDRLDQTHGTITDDSDIWLFGGRHVYRNF-FNQNKY--VEHYQIVDMQN 732
Query: 121 GMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEH--RSIEKIL-------ENIDT 171
+ L + I+L LLG DY + I G+G +E++ E +E ++ E +
Sbjct: 733 QLGLDRSKLINLAYLLGSDYTEGIPGVGYVTGMEILNEFPGAGLEPLVQLSEWWTEAQEN 792
Query: 172 KKYTV-PEGW-LYKEARELFRHPEVADP 197
KK +V P+ + K+ R L HP +P
Sbjct: 793 KKLSVNPKDTKVKKKLRNLQIHPGFPNP 820
Score = 112 (44.5 bits), Expect = 1.7e-05, Sum P(2) = 1.7e-05
Identities = 27/99 (27%), Positives = 54/99 (54%)
Query: 309 VAPSSIRESRKICIDASMSLYQFLIAVRS-EGNQLMSVDGEPTSHLMGTFYRTIRLVEHG 367
+ P ++ E + + +D S+ L Q + VR +GN + + +HL+ F+R +L+
Sbjct: 17 INPETL-EGKILAVDISIWLNQAVKGVRDRDGNAVQN------AHLLTLFHRLCKLLFFR 69
Query: 368 LKPIYVFDGKPPTLKSGELNKRMEKREDAQKALAKAQEQ 406
++P++V+DG P LK L R ++RE+ + + E+
Sbjct: 70 IRPVFVYDGDAPLLKKQTLAVRRQRREETNRESRQTSEK 108
Score = 73 (30.8 bits), Expect = 2.8e-09, Sum P(2) = 2.8e-09
Identities = 18/67 (26%), Positives = 34/67 (50%)
Query: 404 QEQGKLKWSDPDEDGLVKYLCGDK-NFAEDRIRNGAKKLLKA-RSTTTQGRLDSFFTIRR 461
Q W P D L+K C + ++ + + +LK +S TQ R+DSFF + +
Sbjct: 833 QSDASFSWGRPHLD-LIKEFCQSRFGWSSRKTEETLQPVLKQLQSQQTQLRIDSFFRLEQ 891
Query: 462 EEKRKSR 468
+++++ R
Sbjct: 892 QDRQQIR 898
>UNIPROTKB|E1C1G7 [details] [associations]
symbol:EXO1 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0002455 "humoral immune response mediated by
circulating immunoglobulin" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0006298 "mismatch repair" evidence=IEA]
[GO:0016446 "somatic hypermutation of immunoglobulin genes"
evidence=IEA] [GO:0043566 "structure-specific DNA binding"
evidence=IEA] [GO:0045145 "single-stranded DNA specific 5'-3'
exodeoxyribonuclease activity" evidence=IEA] [GO:0045190 "isotype
switching" evidence=IEA] [GO:0048256 "flap endonuclease activity"
evidence=IEA] [GO:0051908 "double-stranded DNA specific 5'-3'
exodeoxyribonuclease activity" evidence=IEA] InterPro:IPR006084
InterPro:IPR006085 InterPro:IPR006086 InterPro:IPR008918
InterPro:IPR019974 InterPro:IPR020045 Pfam:PF00752 Pfam:PF00867
PRINTS:PR00853 PROSITE:PS00841 PROSITE:PS00842 SMART:SM00279
SMART:SM00484 SMART:SM00485 GO:GO:0005634 GO:GO:0002455
GO:GO:0006298 GO:GO:0006310 GO:GO:0090305
GeneTree:ENSGT00510000047676 PANTHER:PTHR11081 SUPFAM:SSF47807
GO:GO:0048256 GO:GO:0045145 GO:GO:0051908 OMA:EPIHVRK GO:GO:0043566
EMBL:AADN02011750 IPI:IPI00593066 Ensembl:ENSGALT00000017486
Uniprot:E1C1G7
Length = 798
Score = 167 (63.8 bits), Expect = 6.1e-09, P = 6.1e-09
Identities = 55/166 (33%), Positives = 79/166 (47%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFG-SNILLRHMTFSEARKLPVQEFHLEKVL 119
AP EA+AQ A + K G V A TED D L FG + L+ F L + + L
Sbjct: 147 APYEADAQLAYLNKTGVVQAIITEDSDLLAFGCKKVFLKIDKFGNG--LEIDQARLGNCK 204
Query: 120 E-GMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIK--EHRSIEKILENID---TKK 173
+ G + E+F +CIL GCDY SI GIG +A +L+K + I K+++ +
Sbjct: 205 QLGNIFTEEKFRYMCILSGCDYLSSIHGIGLAKACKLLKLANNPDIIKVIKKMGHYLKMN 264
Query: 174 YTVPEGWL--YKEARELFRHPEVADPETIEFIDLCILLGCDYCDSI 217
TV E ++ + A F + V DP + + L DY D I
Sbjct: 265 ITVSEEYIQGFTRANNTFLYQLVFDPIKRKLVPLN-----DYADDI 305
>ZFIN|ZDB-GENE-040426-2828 [details] [associations]
symbol:exo1 "exonuclease 1" species:7955 "Danio
rerio" [GO:0003677 "DNA binding" evidence=IEA] [GO:0003824
"catalytic activity" evidence=IEA] [GO:0004518 "nuclease activity"
evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA] [GO:0016788
"hydrolase activity, acting on ester bonds" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA;ISS] [GO:0006298 "mismatch
repair" evidence=ISS] [GO:0045145 "single-stranded DNA specific
5'-3' exodeoxyribonuclease activity" evidence=ISS] [GO:0006310 "DNA
recombination" evidence=ISS] [GO:0048256 "flap endonuclease
activity" evidence=ISS] [GO:0046872 "metal ion binding"
evidence=IEA] [GO:0006974 "response to DNA damage stimulus"
evidence=IEA] [GO:0004519 "endonuclease activity" evidence=IEA]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0004527
"exonuclease activity" evidence=IEA] InterPro:IPR006084
InterPro:IPR006085 InterPro:IPR006086 InterPro:IPR008918
InterPro:IPR019734 InterPro:IPR019974 InterPro:IPR020045
Pfam:PF00752 Pfam:PF00867 PRINTS:PR00853 PROSITE:PS00841
PROSITE:PS00842 SMART:SM00279 SMART:SM00484 SMART:SM00485
ZFIN:ZDB-GENE-040426-2828 GO:GO:0005634 GO:GO:0046872 GO:GO:0003677
GO:GO:0006298 GO:GO:0006310 eggNOG:COG0258 PANTHER:PTHR11081
SUPFAM:SSF47807 KO:K10746 EMBL:BC044187 IPI:IPI00614375
RefSeq:NP_998634.1 UniGene:Dr.17858 ProteinModelPortal:Q803U7
STRING:Q803U7 PRIDE:Q803U7 GeneID:406778 KEGG:dre:406778 CTD:9156
HOGENOM:HOG000112413 HOVERGEN:HBG081488 InParanoid:Q803U7
OrthoDB:EOG4M91QT NextBio:20818292 ArrayExpress:Q803U7
GO:GO:0048256 GO:GO:0045145 Uniprot:Q803U7
Length = 806
Score = 163 (62.4 bits), Expect = 1.7e-08, P = 1.7e-08
Identities = 46/145 (31%), Positives = 75/145 (51%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVLE 120
AP EA+AQ A + K+ A TED D L FG ++ M + L +++ HL +
Sbjct: 147 APYEADAQLAFLNKSDIAQAVITEDSDLLAFGCKKVILKMD-KQGNGLEIEQCHLGRCKS 205
Query: 121 -GMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIK--EHRSIEKILENIDT---KKY 174
G + E+F +CIL GCDY S+ GIG +A +L++ + I K+++ +
Sbjct: 206 LGNIFTEEKFRYMCILSGCDYLQSLYGIGLGKACKLLRMANNPDILKVIKKMGQYLKMDI 265
Query: 175 TVPEGWL--YKEARELFRHPEVADP 197
+VPE ++ + +A F + V DP
Sbjct: 266 SVPEEYIEGFTKANNTFLYQLVFDP 290
>POMBASE|SPBC3E7.08c [details] [associations]
symbol:rad13 "DNA repair nuclease Rad13" species:4896
"Schizosaccharomyces pombe" [GO:0003697 "single-stranded DNA
binding" evidence=IEA] [GO:0004519 "endonuclease activity"
evidence=IEA] [GO:0005634 "nucleus" evidence=IDA] [GO:0006289
"nucleotide-excision repair" evidence=IGI] [GO:0006295
"nucleotide-excision repair, DNA incision, 3'-to lesion"
evidence=TAS] [GO:0046872 "metal ion binding" evidence=IEA]
[GO:1901255 "nucleotide-excision repair involved in interstrand
cross-link repair" evidence=IMP] InterPro:IPR001044
InterPro:IPR006084 InterPro:IPR006085 InterPro:IPR006086
InterPro:IPR008918 InterPro:IPR019974 InterPro:IPR020045
Pfam:PF00752 Pfam:PF00867 PRINTS:PR00066 PRINTS:PR00853
PROSITE:PS00841 PROSITE:PS00842 SMART:SM00279 SMART:SM00484
SMART:SM00485 PomBase:SPBC3E7.08c GO:GO:0005634 GO:GO:0046872
EMBL:CU329671 GenomeReviews:CU329671_GR GO:GO:0003697 GO:GO:0004519
InterPro:IPR003903 PROSITE:PS50330 eggNOG:COG0258 PANTHER:PTHR11081
SUPFAM:SSF47807 GO:GO:0006295 KO:K10846 PANTHER:PTHR11081:SF1
TIGRFAMs:TIGR00600 GO:GO:1901255 EMBL:X66795 PIR:S30301 PIR:T40382
RefSeq:NP_596095.1 ProteinModelPortal:P28706 STRING:P28706
EnsemblFungi:SPBC3E7.08c.1 GeneID:2541051 KEGG:spo:SPBC3E7.08c
HOGENOM:HOG000214817 OMA:VYKNMFN OrthoDB:EOG4XPTQ6 NextBio:20802165
Uniprot:P28706
Length = 1112
Score = 167 (63.8 bits), Expect = 3.7e-08, Sum P(2) = 3.7e-08
Identities = 37/83 (44%), Positives = 55/83 (66%)
Query: 317 SRKICIDASMSLYQFLIAVRS-EGNQLMSVDGEPTSHLMGTFYRTIRLVEHGLKPIYVFD 375
++++ IDAS+ +YQFL AVR EGNQL S SH++G F R +L+ G+KP++VFD
Sbjct: 24 NKRLAIDASIWIYQFLKAVRDKEGNQLKS------SHVVGFFRRICKLLFFGIKPVFVFD 77
Query: 376 GKPPTLKSGELNKRMEKREDAQK 398
G P+LK + KR +R D ++
Sbjct: 78 GGAPSLKRQTIQKRQARRLDREE 100
Score = 42 (19.8 bits), Expect = 3.7e-08, Sum P(2) = 3.7e-08
Identities = 13/52 (25%), Positives = 22/52 (42%)
Query: 410 KWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLL----KARSTTTQGRLDSFF 457
+W PD D L ++L +++ R ++ K + TQ L FF
Sbjct: 938 QWGIPDLDELRQFLMATVGWSKQRTNEVLLPVIQDMHKKQFVGTQSNLTQFF 989
>SGD|S000003490 [details] [associations]
symbol:RAD2 "Single-stranded DNA endonuclease" species:4932
"Saccharomyces cerevisiae" [GO:0005634 "nucleus" evidence=IEA]
[GO:0006295 "nucleotide-excision repair, DNA incision, 3'-to
lesion" evidence=IDA;IMP] [GO:0000112 "nucleotide-excision repair
factor 3 complex" evidence=IDA] [GO:0004518 "nuclease activity"
evidence=IEA] [GO:0004519 "endonuclease activity" evidence=IEA]
[GO:0006974 "response to DNA damage stimulus" evidence=IEA]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0046872 "metal
ion binding" evidence=IEA] [GO:0006289 "nucleotide-excision repair"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0003697
"single-stranded DNA binding" evidence=IEA] [GO:0003824 "catalytic
activity" evidence=IEA] [GO:0016788 "hydrolase activity, acting on
ester bonds" evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA]
[GO:0000014 "single-stranded DNA specific endodeoxyribonuclease
activity" evidence=IDA] [GO:0006366 "transcription from RNA
polymerase II promoter" evidence=IGI] InterPro:IPR001044
InterPro:IPR006084 InterPro:IPR006085 InterPro:IPR006086
InterPro:IPR008918 InterPro:IPR019974 InterPro:IPR020045
Pfam:PF00752 Pfam:PF00867 PRINTS:PR00066 PRINTS:PR00853
PROSITE:PS00841 PROSITE:PS00842 SMART:SM00279 SMART:SM00484
SMART:SM00485 SGD:S000003490 EMBL:BK006941 GO:GO:0046872
GO:GO:0006366 GO:GO:0003697 EMBL:Y07777 GO:GO:0000014
eggNOG:COG0258 PANTHER:PTHR11081 SUPFAM:SSF47807 GO:GO:0006295
GO:GO:0000112 KO:K10846 TIGRFAMs:TIGR00600 HOGENOM:HOG000214817
OMA:VYKNMFN OrthoDB:EOG4XPTQ6 EMBL:M10275 EMBL:Z73043 EMBL:AY692857
PIR:A29839 RefSeq:NP_011774.1 PDB:2LOX PDBsum:2LOX
ProteinModelPortal:P07276 SMR:P07276 DIP:DIP-5869N IntAct:P07276
MINT:MINT-683829 STRING:P07276 PaxDb:P07276 PeptideAtlas:P07276
PRIDE:P07276 EnsemblFungi:YGR258C GeneID:853174 KEGG:sce:YGR258C
CYGD:YGR258c GeneTree:ENSGT00640000091542 NextBio:973302
Genevestigator:P07276 GermOnline:YGR258C Uniprot:P07276
Length = 1031
Score = 161 (61.7 bits), Expect = 3.9e-08, P = 3.9e-08
Identities = 37/103 (35%), Positives = 60/103 (58%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVLE 120
AP EAEAQCA +++ V T+D D FG + ++M F E K V+ + E +L+
Sbjct: 789 APMEAEAQCAELLQLNLVDGIITDDSDVFLFGGTKIYKNM-FHE--KNYVEFYDAESILK 845
Query: 121 GMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIE 163
+ L + I+L LLG DY + ++G+GP +IE+I E +++
Sbjct: 846 LLGLDRKNMIELAQLLGSDYTNGLKGMGPVSSIEVIAEFGNLK 888
Score = 152 (58.6 bits), Expect = 3.7e-07, P = 3.7e-07
Identities = 34/89 (38%), Positives = 57/89 (64%)
Query: 316 ESRKICIDASMSLYQFLIAVRS-EGNQLMSVDGEPTSHLMGTFYRTIRLVEHGLKPIYVF 374
E +++ +DAS+ +YQFL AVR EGN + + SH+ G F R +L+ G++P++VF
Sbjct: 23 EDKRMAVDASIWIYQFLKAVRDQEGNAVKN------SHITGFFRRICKLLYFGIRPVFVF 76
Query: 375 DGKPPTLKSGELNKRMEKREDAQKALAKA 403
DG P LK + +R E+R+ +++ AK+
Sbjct: 77 DGGVPVLKRETIRQRKERRQGKRES-AKS 104
>ASPGD|ASPL0000033989 [details] [associations]
symbol:AN3035 species:162425 "Emericella nidulans"
[GO:0005575 "cellular_component" evidence=ND] [GO:0006281 "DNA
repair" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0004518 "nuclease activity" evidence=IEA] InterPro:IPR006084
InterPro:IPR006085 InterPro:IPR006086 InterPro:IPR008918
InterPro:IPR019974 InterPro:IPR020045 Pfam:PF00752 Pfam:PF00867
PRINTS:PR00853 PROSITE:PS00841 SMART:SM00279 SMART:SM00484
SMART:SM00485 GO:GO:0005634 GO:GO:0003677 GO:GO:0006281
EMBL:BN001306 EMBL:AACD01000051 GO:GO:0004527 GO:GO:0090305
GO:GO:0004519 eggNOG:COG0258 OrthoDB:EOG44QX8J PANTHER:PTHR11081
SUPFAM:SSF47807 KO:K10746 RefSeq:XP_660639.1
ProteinModelPortal:Q5B8U5 STRING:Q5B8U5
EnsemblFungi:CADANIAT00010044 GeneID:2874467 KEGG:ani:AN3035.2
HOGENOM:HOG000196065 OMA:KTAYRSI Uniprot:Q5B8U5
Length = 761
Score = 156 (60.0 bits), Expect = 9.2e-08, P = 9.2e-08
Identities = 43/149 (28%), Positives = 76/149 (51%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMT-FSEARKLPVQEFHLEKVL 119
AP EA+AQ + K G + +ED D L FG+ LL + E ++ +F + +
Sbjct: 147 APYEADAQLVYLEKHGFIDGIISEDSDLLVFGAKRLLSKLDQHGELIEINRADFTACREV 206
Query: 120 EGMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTK-KYTVPE 178
+ + +F +CI+ GCDY +I +G K A I++++S+EK L + + Y VP
Sbjct: 207 SFVGWTDADFRRMCIMSGCDYLPNIARVGLKTAYRSIRKYKSVEKALRMLQFEGPYHVPA 266
Query: 179 GWL--YKEARELFRHPEVADPETIEFIDL 205
+L + +A F + V P++ + + L
Sbjct: 267 DYLQSFMQAELTFLYQRVFCPKSGKLVPL 295
>ASPGD|ASPL0000027656 [details] [associations]
symbol:AN5216 species:162425 "Emericella nidulans"
[GO:0004519 "endonuclease activity" evidence=IEA] [GO:0008409
"5'-3' exonuclease activity" evidence=IEA] [GO:0003697
"single-stranded DNA binding" evidence=IEA] [GO:1901255
"nucleotide-excision repair involved in interstrand cross-link
repair" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR001044 InterPro:IPR006084 InterPro:IPR006085
InterPro:IPR006086 InterPro:IPR008918 InterPro:IPR019974
InterPro:IPR020045 Pfam:PF00752 Pfam:PF00867 PRINTS:PR00066
PRINTS:PR00853 PROSITE:PS00841 PROSITE:PS00842 SMART:SM00279
SMART:SM00484 SMART:SM00485 Pfam:PF02809 GO:GO:0005634
EMBL:BN001305 GO:GO:0003697 GO:GO:0090305 GO:GO:0004519
InterPro:IPR003903 SMART:SM00726 PROSITE:PS50330 EMBL:AACD01000089
GO:GO:0006289 eggNOG:COG0258 PANTHER:PTHR11081 SUPFAM:SSF47807
KO:K10846 HOGENOM:HOG000214817 OMA:VYKNMFN OrthoDB:EOG4XPTQ6
RefSeq:XP_662820.1 ProteinModelPortal:Q5B2L4 STRING:Q5B2L4
EnsemblFungi:CADANIAT00003214 GeneID:2871507 KEGG:ani:AN5216.2
Uniprot:Q5B2L4
Length = 1141
Score = 158 (60.7 bits), Expect = 1.8e-07, Sum P(2) = 1.8e-07
Identities = 40/105 (38%), Positives = 58/105 (55%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVLE 120
AP EAEAQCA +V G V T+D D FG + ++M F++++ + E +L LE
Sbjct: 826 APMEAEAQCAELVSLGLVDGIITDDSDIFLFGGTRVYKNM-FNQSKYV---ECYLTADLE 881
Query: 121 GMELSHE-EFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEK 164
H + I LLG DY + I GIGP A+E++ E S+E+
Sbjct: 882 KEYALHRRKLISFAHLLGSDYTEGIPGIGPVTALEILTEFSSLEE 926
Score = 154 (59.3 bits), Expect = 5.0e-07, Sum P(2) = 5.0e-07
Identities = 38/90 (42%), Positives = 56/90 (62%)
Query: 318 RKICIDASMSLYQFLIAVRS-EGNQLMSVDGEPTSHLMGTFYRTIRLVEHGLKPIYVFDG 376
+++ +DAS+ +YQFL AVR EGN L + SH++G F R +L+ G+KP++VFDG
Sbjct: 25 KRLAVDASIWIYQFLKAVRDKEGNALRN------SHIVGFFRRICKLLYFGIKPVFVFDG 78
Query: 377 KPPTLKSGEL---NKRME-KREDAQKALAK 402
P LK + KR E +REDA + +K
Sbjct: 79 GAPVLKRQTIANRKKRREGRREDAVQTASK 108
Score = 45 (20.9 bits), Expect = 1.8e-07, Sum P(2) = 1.8e-07
Identities = 16/73 (21%), Positives = 31/73 (42%)
Query: 391 EKREDAQKALAKA-QEQGKLKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLK----AR 445
+ R DA +A ++ +W PD GL +L ++++R +++
Sbjct: 967 DARVDAAYLEPEADRDPSPFQWGVPDLHGLRNFLMATIGWSQERTDEVLVPVIRDINQRE 1026
Query: 446 STTTQGRLDSFFT 458
TQ + SFF+
Sbjct: 1027 QEGTQSNITSFFS 1039
Score = 43 (20.2 bits), Expect = 8.0e-07, Sum P(2) = 8.0e-07
Identities = 16/69 (23%), Positives = 31/69 (44%)
Query: 400 LAKAQEQGKLKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSTTTQGRLDSFFTI 459
LA+A + +SDP+++ L++ L + E+ +R A S T +
Sbjct: 734 LAQAVDIDDEGFSDPEDEELMRQLAAE---GEEHVRFAATLNSAPHSEGTFDYEQELKQL 790
Query: 460 RREEKRKSR 468
R ++K+ R
Sbjct: 791 RSQQKKDRR 799
>FB|FBgn0263831 [details] [associations]
symbol:Gen "XPG-like endonuclease" species:7227 "Drosophila
melanogaster" [GO:0006284 "base-excision repair" evidence=ISS]
[GO:0048256 "flap endonuclease activity" evidence=ISS] [GO:0003684
"damaged DNA binding" evidence=ISS] [GO:0000014 "single-stranded
DNA specific endodeoxyribonuclease activity" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISS;IDA] [GO:0004519 "endonuclease
activity" evidence=ISS] [GO:0035312 "5'-3' exodeoxyribonuclease
activity" evidence=IDA] [GO:0008310 "single-stranded DNA specific
3'-5' exodeoxyribonuclease activity" evidence=IDA] [GO:0000738 "DNA
catabolic process, exonucleolytic" evidence=IDA] [GO:0004520
"endodeoxyribonuclease activity" evidence=IDA] [GO:0000737 "DNA
catabolic process, endonucleolytic" evidence=IDA] [GO:0008311
"double-stranded DNA specific 3'-5' exodeoxyribonuclease activity"
evidence=IDA] [GO:0006302 "double-strand break repair"
evidence=IMP] InterPro:IPR006084 InterPro:IPR006085
InterPro:IPR006086 InterPro:IPR008918 InterPro:IPR020045
Pfam:PF00752 Pfam:PF00867 PRINTS:PR00853 PROSITE:PS00841
PROSITE:PS00842 SMART:SM00279 SMART:SM00484 SMART:SM00485
GO:GO:0005634 EMBL:AE014296 GO:GO:0046872 GO:GO:0003677
GO:GO:0006302 GO:GO:0004520 GO:GO:0008311 GO:GO:0000737
GO:GO:0000738 eggNOG:COG0258 PANTHER:PTHR11081 SUPFAM:SSF47807
GO:GO:0008310 HSSP:P39748 GeneTree:ENSGT00640000091478 KO:K15338
EMBL:AB103508 EMBL:AF160893 EMBL:AY128475 RefSeq:NP_647943.2
UniGene:Dm.847 ProteinModelPortal:Q9VRJ0 SMR:Q9VRJ0 PRIDE:Q9VRJ0
EnsemblMetazoa:FBtr0077176 GeneID:38594 KEGG:dme:Dmel_CG10670
CTD:38594 FlyBase:FBgn0263831 InParanoid:Q9VRJ0 OMA:FFRTCYL
OrthoDB:EOG4QFTV7 PhylomeDB:Q9VRJ0 GenomeRNAi:38594 NextBio:809430
Bgee:Q9VRJ0 GO:GO:0035312 Uniprot:Q9VRJ0
Length = 726
Score = 138 (53.6 bits), Expect = 4.1e-07, Sum P(2) = 4.1e-07
Identities = 38/130 (29%), Positives = 64/130 (49%)
Query: 60 KAPCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSE-----ARKLPVQEFH 114
+ P EAEA CA + K G V ++D D +G+ + R+ + S A V +
Sbjct: 139 QGPGEAEAYCAFLNKHGLVDGVISQDSDCFAYGAVRVYRNFSVSTQGAQAAAGGAVDIYD 198
Query: 115 LEKVLEGMELSHEEFIDLCILLGCDYC-DSIRGIGPKRAIELIKEHRSIEKILENI---- 169
+ ++ M+ ++ I + +L GCDYC D I GIG ++L +++ E IL+ +
Sbjct: 199 MREITSRMDFGQQKIIVMALLCGCDYCPDGIGGIGKDGVLKLFNKYKETE-ILDRMRSWR 257
Query: 170 -DTKKYTVPE 178
+T KY E
Sbjct: 258 GETDKYNALE 267
Score = 58 (25.5 bits), Expect = 4.1e-07, Sum P(2) = 4.1e-07
Identities = 25/79 (31%), Positives = 36/79 (45%)
Query: 361 IRLVEHGLK-P-IYVFDGKPPTLKSGELNK-RMEK-----REDAQKALAKAQEQGKLKWS 412
I+ + H L+ P IY F P L ++ + + EK E +K K +L+W
Sbjct: 362 IKQIGHLLQWPEIYCFQKFFPILTRWQVQQSKQEKILIQPHEIIKKRTVKGVPSLELRWH 421
Query: 413 DPDEDGLVKYLCGDKNFAE 431
DP G+ K L DK AE
Sbjct: 422 DPS--GIFKGLIPDKQIAE 438
>TAIR|locus:2091343 [details] [associations]
symbol:UVH3 "ULTRAVIOLET HYPERSENSITIVE 3" species:3702
"Arabidopsis thaliana" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003697 "single-stranded DNA binding" evidence=IEA] [GO:0003824
"catalytic activity" evidence=IEA] [GO:0004518 "nuclease activity"
evidence=IEA;ISS] [GO:0004519 "endonuclease activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISM;IEA] [GO:0006281 "DNA repair"
evidence=IEA;ISS] [GO:0006289 "nucleotide-excision repair"
evidence=IEA] [GO:0016788 "hydrolase activity, acting on ester
bonds" evidence=IEA] [GO:0010224 "response to UV-B" evidence=IGI]
[GO:0009408 "response to heat" evidence=IMP] [GO:0005515 "protein
binding" evidence=IPI] [GO:0006486 "protein glycosylation"
evidence=RCA] [GO:0010213 "non-photoreactive DNA repair"
evidence=IMP] InterPro:IPR001044 InterPro:IPR006084
InterPro:IPR006085 InterPro:IPR006086 InterPro:IPR008918
InterPro:IPR019974 InterPro:IPR020045 Pfam:PF00752 Pfam:PF00867
PRINTS:PR00066 PRINTS:PR00853 PROSITE:PS00841 PROSITE:PS00842
SMART:SM00279 SMART:SM00484 SMART:SM00485 GO:GO:0005634
EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0046872 GO:GO:0009408
GO:GO:0003697 GO:GO:0090305 GO:GO:0004519 GO:GO:0010224
GO:GO:0006289 eggNOG:COG0258 PANTHER:PTHR11081 SUPFAM:SSF47807
GO:GO:0010213 KO:K10846 PANTHER:PTHR11081:SF1 OMA:VYKNMFN
EMBL:AB028616 EMBL:AF312711 IPI:IPI00535100 RefSeq:NP_566830.1
UniGene:At.5484 ProteinModelPortal:Q9ATY5 SMR:Q9ATY5 IntAct:Q9ATY5
STRING:Q9ATY5 PaxDb:Q9ATY5 PRIDE:Q9ATY5 EnsemblPlants:AT3G28030.1
GeneID:822427 KEGG:ath:AT3G28030 GeneFarm:4444 TAIR:At3g28030
HOGENOM:HOG000083663 InParanoid:Q9ATY5 PhylomeDB:Q9ATY5
ProtClustDB:CLSN2688857 Genevestigator:Q9ATY5 GermOnline:AT3G28030
Uniprot:Q9ATY5
Length = 1479
Score = 157 (60.3 bits), Expect = 4.3e-07, Sum P(2) = 4.3e-07
Identities = 39/119 (32%), Positives = 68/119 (57%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVLE 120
AP EAEAQCA M ++ V T+D D FG+ + +++ F + RK V+ + ++ + +
Sbjct: 943 APMEAEAQCAFMEQSNLVDGIVTDDSDVFLFGARSVYKNI-FDD-RKY-VETYFMKDIEK 999
Query: 121 GMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIK---EHRSIEKILENIDTKKYTV 176
+ LS ++ I + +LLG DY + I GIG AIE++ E ++K E +++ T+
Sbjct: 1000 ELGLSRDKIIRMAMLLGSDYTEGISGIGIVNAIEVVTAFPEEDGLQKFREWVESPDPTI 1058
Score = 138 (53.6 bits), Expect = 4.7e-05, Sum P(2) = 4.7e-05
Identities = 32/90 (35%), Positives = 52/90 (57%)
Query: 317 SRKICIDASMSLYQFLIAVRSEGNQLMSVDGEPTSHLMGTFYRTIRLVEHGLKPIYVFDG 376
++++ IDAS+ + QF+ A+R E ++ +HL+G F R +L+ KPI+VFDG
Sbjct: 24 NKRLAIDASIWMVQFIKAMRDEKGDMVQ-----NAHLIGFFRRICKLLFLRTKPIFVFDG 78
Query: 377 KPPTLKSGELNKRMEKREDAQKALAKAQEQ 406
P LK + R +RE+AQ + K E+
Sbjct: 79 ATPALKRRTVIARRRQRENAQTKIRKTAEK 108
Score = 45 (20.9 bits), Expect = 4.3e-07, Sum P(2) = 4.3e-07
Identities = 9/27 (33%), Positives = 16/27 (59%)
Query: 426 DKNFAEDRIRNGAKKLLKARSTTTQGR 452
D A ++++N K+L K S+ +GR
Sbjct: 1246 DSPIANEKVKNKRKRLEKPSSSRGRGR 1272
>UNIPROTKB|E1C986 [details] [associations]
symbol:Gga.42587 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0004518
"nuclease activity" evidence=IEA] [GO:0006281 "DNA repair"
evidence=IEA] InterPro:IPR006084 InterPro:IPR006085
InterPro:IPR006086 InterPro:IPR008918 Pfam:PF00752 Pfam:PF00867
PRINTS:PR00853 SMART:SM00279 SMART:SM00484 GO:GO:0003677
GO:GO:0006281 GO:GO:0090305 GO:GO:0004518 PANTHER:PTHR11081
GeneTree:ENSGT00640000091478 EMBL:AADN02018598 IPI:IPI00680396
Ensembl:ENSGALT00000031592 Uniprot:E1C986
Length = 190
Score = 133 (51.9 bits), Expect = 4.6e-07, P = 4.6e-07
Identities = 36/104 (34%), Positives = 54/104 (51%)
Query: 60 KAPCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLE--- 116
+A EAEA CA + G V T D D +G+ + R+ F+ KL +E HL+
Sbjct: 87 QAAGEAEAMCAYLNAKGHVDGCITNDGDVFLYGAQTVYRN--FAMNSKLSFKEPHLDCYT 144
Query: 117 --KVLEGMELSHEEFIDLCILLGCDYCDS-IRGIGPKRAIELIK 157
+ E + E I L +LLGCDY I G+G ++A++LI+
Sbjct: 145 MSSIKEKLGCDRESLIGLAVLLGCDYLPKGIPGVGKEQALKLIE 188
>FB|FBgn0015553 [details] [associations]
symbol:tos "tosca" species:7227 "Drosophila melanogaster"
[GO:0008852 "exodeoxyribonuclease I activity" evidence=ISS]
[GO:0004518 "nuclease activity" evidence=NAS] [GO:0006281 "DNA
repair" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR006084 InterPro:IPR006085 InterPro:IPR006086
InterPro:IPR008918 InterPro:IPR019974 InterPro:IPR020045
Pfam:PF00752 Pfam:PF00867 PRINTS:PR00853 PROSITE:PS00841
PROSITE:PS00842 SMART:SM00279 SMART:SM00484 SMART:SM00485
GO:GO:0005634 EMBL:AE014134 GO:GO:0046872 GO:GO:0003677
GO:GO:0006298 GO:GO:0006310 eggNOG:COG0258
GeneTree:ENSGT00510000047676 PANTHER:PTHR11081 SUPFAM:SSF47807
KO:K10746 GO:GO:0048256 GO:GO:0045145 EMBL:X89021 EMBL:X89022
EMBL:AY051794 EMBL:BT058042 RefSeq:NP_477145.1 UniGene:Dm.4197
ProteinModelPortal:Q24558 SMR:Q24558 IntAct:Q24558 MINT:MINT-297328
STRING:Q24558 PRIDE:Q24558 EnsemblMetazoa:FBtr0081131 GeneID:35119
KEGG:dme:Dmel_CG10387 UCSC:CG10387-RA CTD:35119 FlyBase:FBgn0015553
InParanoid:Q24558 OMA:LAKACKF OrthoDB:EOG42JM78 PhylomeDB:Q24558
GenomeRNAi:35119 NextBio:791961 Bgee:Q24558 GermOnline:CG10387
GO:GO:0051908 Uniprot:Q24558
Length = 732
Score = 149 (57.5 bits), Expect = 5.1e-07, P = 5.1e-07
Identities = 45/157 (28%), Positives = 76/157 (48%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFGS-NILLRHMTFSEARKLPVQEFHLEKVL 119
AP EA+AQ A + +A TED D FG+ NI+ + + ++ HL
Sbjct: 147 APYEADAQMAWLNRADVAQYIITEDSDLTLFGAKNIIFKLDLNGSGLLVEAEKLHLAMGC 206
Query: 120 EGMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELI-----KEHR-SIEKILENIDTKK 173
+ ++F +CIL GCDY DS+ GIG +A + I ++ R +++KI ++ +
Sbjct: 207 TEEKYHFDKFRRMCILSGCDYLDSLPGIGLAKACKFILKTEQEDMRIALKKIPSYLNMRN 266
Query: 174 YTVPEGWL--YKEARELFRHPEVADPETIEFIDLCIL 208
V + ++ + +A FRH + +P LC L
Sbjct: 267 LEVDDDYIENFMKAEATFRHMFIYNPLERRMQRLCAL 303
>MGI|MGI:2443149 [details] [associations]
symbol:Gen1 "Gen homolog 1, endonuclease (Drosophila)"
species:10090 "Mus musculus" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003824 "catalytic activity" evidence=IEA]
[GO:0004518 "nuclease activity" evidence=IEA] [GO:0004519
"endonuclease activity" evidence=IEA] [GO:0005575
"cellular_component" evidence=ND] [GO:0005634 "nucleus"
evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA] [GO:0006974
"response to DNA damage stimulus" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0046872 "metal ion binding"
evidence=IEA] InterPro:IPR006084 InterPro:IPR006085
InterPro:IPR006086 InterPro:IPR008918 InterPro:IPR020045
Pfam:PF00752 Pfam:PF00867 PRINTS:PR00853 PROSITE:PS00841
PROSITE:PS00842 SMART:SM00279 SMART:SM00484 SMART:SM00485
MGI:MGI:2443149 GO:GO:0005634 GO:GO:0046872 GO:GO:0003677
GO:GO:0006281 GO:GO:0090305 GO:GO:0004519 eggNOG:COG0258
PANTHER:PTHR11081 SUPFAM:SSF47807 HSSP:P39748
GeneTree:ENSGT00640000091478 KO:K15338 CTD:348654
HOGENOM:HOG000060137 HOVERGEN:HBG096402 OMA:FFRISYL
OrthoDB:EOG4T1HKR EMBL:AK030995 EMBL:AK031077 EMBL:AK158255
EMBL:BC090653 EMBL:BC138157 EMBL:BC138158 IPI:IPI00624763
IPI:IPI00880889 RefSeq:NP_796305.3 UniGene:Mm.215295
ProteinModelPortal:Q8BMI4 STRING:Q8BMI4 PhosphoSite:Q8BMI4
PRIDE:Q8BMI4 Ensembl:ENSMUST00000166117 GeneID:209334
KEGG:mmu:209334 UCSC:uc007nav.1 UCSC:uc007naw.1 InParanoid:B2RR04
ChiTaRS:GEN1 NextBio:372631 Bgee:Q8BMI4 CleanEx:MM_GEN1
Genevestigator:Q8BMI4 Uniprot:Q8BMI4
Length = 908
Score = 149 (57.5 bits), Expect = 6.8e-07, P = 6.8e-07
Identities = 47/163 (28%), Positives = 80/163 (49%)
Query: 60 KAPCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLP-VQEFHLEKV 118
+A EAEA CA + +G V T D DA +G+ + R+ T + K P V + + +
Sbjct: 130 QAAGEAEAMCAYLNASGHVDGCLTNDGDAFLYGAQTVYRNFTMNT--KDPHVDCYTISSI 187
Query: 119 LEGMELSHEEFIDLCILLGCDYCDS-IRGIGPKRAIELI---KEHRSIEKILENIDTKKY 174
+ L + + L +LLGCDY + G+G ++A++L+ K +++ + I+ Y
Sbjct: 188 KSKLGLDRDALVGLAVLLGCDYLPKGVPGVGKEQALKLLQIFKGQSLLQRFNQWIEDPCY 247
Query: 175 TVPEGWLYKEAR-ELFRHPEVADPETIEFIDLCILLGCD-YCD 215
+VP+ K + HP P+ E + CIL D YC+
Sbjct: 248 SVPQSAPKKVVHCSVCSHP--GSPKDHER-NGCILCKSDKYCE 287
>MGI|MGI:103582 [details] [associations]
symbol:Ercc5 "excision repair cross-complementing rodent
repair deficiency, complementation group 5" species:10090 "Mus
musculus" [GO:0000405 "bubble DNA binding" evidence=ISO]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003690
"double-stranded DNA binding" evidence=ISO] [GO:0003697
"single-stranded DNA binding" evidence=ISO] [GO:0003824 "catalytic
activity" evidence=IEA] [GO:0004518 "nuclease activity"
evidence=IEA] [GO:0004519 "endonuclease activity" evidence=IEA]
[GO:0004520 "endodeoxyribonuclease activity" evidence=ISO]
[GO:0005634 "nucleus" evidence=ISO] [GO:0006281 "DNA repair"
evidence=IMP] [GO:0006283 "transcription-coupled
nucleotide-excision repair" evidence=ISO] [GO:0006289
"nucleotide-excision repair" evidence=IMP] [GO:0006295
"nucleotide-excision repair, DNA incision, 3'-to lesion"
evidence=ISO] [GO:0006974 "response to DNA damage stimulus"
evidence=IEA] [GO:0008340 "determination of adult lifespan"
evidence=IMP] [GO:0009411 "response to UV" evidence=ISO;IMP]
[GO:0009650 "UV protection" evidence=ISO;IDA;IMP] [GO:0010225
"response to UV-C" evidence=ISO] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0016788 "hydrolase activity, acting on ester
bonds" evidence=IEA] [GO:0035264 "multicellular organism growth"
evidence=IMP] [GO:0042803 "protein homodimerization activity"
evidence=ISO] [GO:0043066 "negative regulation of apoptotic
process" evidence=ISO] [GO:0046872 "metal ion binding"
evidence=IEA] [GO:0047485 "protein N-terminus binding"
evidence=ISO] InterPro:IPR001044 InterPro:IPR006084
InterPro:IPR006085 InterPro:IPR006086 InterPro:IPR008918
InterPro:IPR019974 InterPro:IPR020045 Pfam:PF00752 Pfam:PF00867
PRINTS:PR00066 PRINTS:PR00853 PROSITE:PS00841 PROSITE:PS00842
SMART:SM00279 SMART:SM00484 SMART:SM00485 MGI:MGI:103582
GO:GO:0005634 GO:GO:0008340 GO:GO:0046872 GO:GO:0003697
GO:GO:0090305 GO:GO:0035264 GO:GO:0004519 GO:GO:0006289
GO:GO:0009650 eggNOG:COG0258 PANTHER:PTHR11081 SUPFAM:SSF47807
HOVERGEN:HBG051501 OrthoDB:EOG4CNQQZ PANTHER:PTHR11081:SF1
TIGRFAMs:TIGR00600 EMBL:D16306 EMBL:U40796 EMBL:U40795 EMBL:U39892
EMBL:U39893 EMBL:U39894 EMBL:U39896 EMBL:U40073 EMBL:U40431
EMBL:U40432 EMBL:U40668 EMBL:U40669 EMBL:U40670 EMBL:U40792
EMBL:U40793 EMBL:U40794 EMBL:AC123800 IPI:IPI00310463 PIR:A57650
UniGene:Mm.2213 ProteinModelPortal:P35689 STRING:P35689
PhosphoSite:P35689 PRIDE:P35689 HOGENOM:HOG000131367
InParanoid:P35689 Genevestigator:P35689 Uniprot:P35689
Length = 1170
Score = 124 (48.7 bits), Expect = 2.5e-06, Sum P(2) = 2.5e-06
Identities = 33/99 (33%), Positives = 55/99 (55%)
Query: 309 VAPSSIRESRKICIDASMSLYQFLIAVR-SEGNQLMSVDGEPTSHLMGTFYRTIRLVEHG 367
V+P ++ E + + +D S+ L Q L VR S GN + + +HL+ F+R +L+
Sbjct: 17 VSPEAL-EGKVLAVDISIWLNQALKGVRDSHGNVIEN------AHLLTLFHRLCKLLFFR 69
Query: 368 LKPIYVFDGKPPTLKSGELNKRMEKREDAQKALAKAQEQ 406
++PI+VFDG P LK L KR ++++ A K E+
Sbjct: 70 IRPIFVFDGDAPLLKKQTLAKRRQRKDSASIDSRKTTEK 108
Score = 124 (48.7 bits), Expect = 2.5e-06, Sum P(2) = 2.5e-06
Identities = 33/110 (30%), Positives = 55/110 (50%)
Query: 60 KAPCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVL 119
+AP EAEAQCA + + T T+D D FG+ + ++ F K V+ +
Sbjct: 784 QAPMEAEAQCAMLDLTDQTSGTITDDSDIWLFGARHVYKN--FFNKNKF-VEYYQYVDFY 840
Query: 120 EGMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEH--RSIEKILE 167
+ L + I+L LLG DY + I +G A+E++ E R ++ +L+
Sbjct: 841 SQLGLDRNKLINLAYLLGSDYTEGIPTVGCVTAMEILNEFPGRGLDPLLK 890
Score = 70 (29.7 bits), Expect = 2.5e-06, Sum P(2) = 2.5e-06
Identities = 19/66 (28%), Positives = 35/66 (53%)
Query: 406 QGKLKWSDPDEDGLVKYLCGDKNFAEDRIRNGAK--KLLK-ARSTTTQGRLDSFFTIRRE 462
+G W PD D + + C + F +R++ +LK + TQ R+DSFF + ++
Sbjct: 944 RGSFLWGKPDVDKISTF-C-QRYFGWNRMKTDESLYPVLKHLNAHQTQLRIDSFFRLAQQ 1001
Query: 463 EKRKSR 468
EK+ ++
Sbjct: 1002 EKQDAK 1007
>UNIPROTKB|I3LQY2 [details] [associations]
symbol:ERCC5 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0006289 "nucleotide-excision repair" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0004519 "endonuclease
activity" evidence=IEA] [GO:0003697 "single-stranded DNA binding"
evidence=IEA] InterPro:IPR001044 InterPro:IPR006084
InterPro:IPR006086 InterPro:IPR008918 InterPro:IPR019974
InterPro:IPR020045 Pfam:PF00867 PRINTS:PR00066 PRINTS:PR00853
PROSITE:PS00842 SMART:SM00279 SMART:SM00484 GO:GO:0008340
GO:GO:0043066 GO:GO:0003690 GO:GO:0003697 GO:GO:0035264
GO:GO:0004520 GO:GO:0010225 GO:GO:0000405 GO:GO:0009650
GO:GO:0005675 GO:GO:0006283 SUPFAM:SSF47807 GO:GO:0006295
GeneTree:ENSGT00640000091542 OMA:MSNISIW Ensembl:ENSSSCT00000029959
Uniprot:I3LQY2
Length = 1562
Score = 121 (47.7 bits), Expect = 3.0e-06, Sum P(2) = 3.0e-06
Identities = 33/110 (30%), Positives = 55/110 (50%)
Query: 60 KAPCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVL 119
+AP EAEAQCA + + + T T+D D FG+ + ++ F K V+ +
Sbjct: 1173 EAPMEAEAQCAILDLSDQTSGTITDDSDIWLFGARHVYKN--FFNKNKF-VEYYQYVDFH 1229
Query: 120 EGMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEH--RSIEKILE 167
+ L + I+L LLG DY + I +G A+E++ E +E +L+
Sbjct: 1230 SQLGLDRNKLINLAYLLGSDYTEGIPTVGCVTAMEILNEFPGHGLEPLLK 1279
Score = 75 (31.5 bits), Expect = 3.0e-06, Sum P(2) = 3.0e-06
Identities = 30/119 (25%), Positives = 56/119 (47%)
Query: 366 HGLKPIYVFDG------KPPTLKSG----ELNKRMEKREDAQKALAKA---QEQGKLKWS 412
HGL+P+ F K L+ ++ K++ K + A A + +G W
Sbjct: 1272 HGLEPLLKFSEWWHEAQKNQKLRPNPYDTKVKKKLRKLQLAPXAYLRPVVDDSRGAFLWG 1331
Query: 413 DPDEDGLVKYLCGDKNFAEDRIRNGAK--KLLKA-RSTTTQGRLDSFFTIRREEKRKSR 468
PD D + ++ C + F +R + +LK + TQ R+DSFF + ++E+++S+
Sbjct: 1332 TPDLDKIREF-C-QRYFGWNRTKTDESLFPVLKQLNAQQTQLRIDSFFRLAQQERQESK 1388
>UNIPROTKB|I3LHP7 [details] [associations]
symbol:I3LHP7 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0006289 "nucleotide-excision repair" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0004519 "endonuclease
activity" evidence=IEA] [GO:0003697 "single-stranded DNA binding"
evidence=IEA] InterPro:IPR001044 InterPro:IPR006084
InterPro:IPR006085 InterPro:IPR019974 Pfam:PF00752 PRINTS:PR00066
PRINTS:PR00853 PROSITE:PS00841 SMART:SM00485 GO:GO:0005634
GO:GO:0003697 GO:GO:0090305 GO:GO:0004519 GO:GO:0006289
PANTHER:PTHR11081 PANTHER:PTHR11081:SF1
GeneTree:ENSGT00640000091542 EMBL:CU469267
Ensembl:ENSSSCT00000025898 Uniprot:I3LHP7
Length = 159
Score = 116 (45.9 bits), Expect = 3.5e-06, P = 3.5e-06
Identities = 33/99 (33%), Positives = 54/99 (54%)
Query: 309 VAPSSIRESRKICIDASMSLYQFLIAVRSE-GNQLMSVDGEPTSHLMGTFYRTIRLVEHG 367
V P ++ E + + +D S+ L Q L VR GN S++ +HL+ F+R +L+
Sbjct: 17 VNPETL-EGKILAVDISIWLNQALKGVRDRHGN---SIEN---AHLLTLFHRLCKLLFFR 69
Query: 368 LKPIYVFDGKPPTLKSGELNKRMEKREDAQKALAKAQEQ 406
++PI+VFDG P LK L KR ++++ A K E+
Sbjct: 70 IRPIFVFDGDAPLLKKQTLAKRRQRKDLATDDSKKTTEK 108
>SGD|S000005559 [details] [associations]
symbol:EXO1 "5'-3' exonuclease and flap-endonuclease"
species:4932 "Saccharomyces cerevisiae" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA;IDA;IPI] [GO:0004527
"exonuclease activity" evidence=IEA] [GO:0031292 "gene conversion
at mating-type locus, DNA double-strand break processing"
evidence=IMP] [GO:0031860 "telomeric 3' overhang formation"
evidence=IGI] [GO:0000706 "meiotic DNA double-strand break
processing" evidence=IGI] [GO:0005737 "cytoplasm" evidence=IDA]
[GO:0006281 "DNA repair" evidence=IEA] [GO:0006298 "mismatch
repair" evidence=IMP] [GO:0000729 "DNA double-strand break
processing" evidence=IGI;IMP] [GO:0004518 "nuclease activity"
evidence=IEA] [GO:0006974 "response to DNA damage stimulus"
evidence=IEA] [GO:0046872 "metal ion binding" evidence=IEA]
[GO:0003824 "catalytic activity" evidence=IEA] [GO:0016788
"hydrolase activity, acting on ester bonds" evidence=IEA]
[GO:0000723 "telomere maintenance" evidence=IGI] [GO:0017108
"5'-flap endonuclease activity" evidence=IDA] [GO:0008409 "5'-3'
exonuclease activity" evidence=IDA] InterPro:IPR006084
InterPro:IPR006085 InterPro:IPR006086 InterPro:IPR008918
InterPro:IPR019974 InterPro:IPR020045 Pfam:PF00752 Pfam:PF00867
PRINTS:PR00853 PROSITE:PS00841 PROSITE:PS00842 SMART:SM00279
SMART:SM00484 SMART:SM00485 SGD:S000005559 GO:GO:0005634
EMBL:X87331 EMBL:BK006948 GO:GO:0046872 GO:GO:0003677 GO:GO:0006298
GO:GO:0000706 GO:GO:0017108 GO:GO:0031292 GO:GO:0008409
GO:GO:0031860 eggNOG:COG0258 GeneTree:ENSGT00510000047676
OrthoDB:EOG44QX8J PANTHER:PTHR11081 SUPFAM:SSF47807 BRENDA:3.1.11.1
KO:K10746 EMBL:U86134 EMBL:Z74941 EMBL:S69545 PIR:S62169
RefSeq:NP_014676.1 ProteinModelPortal:P39875 SMR:P39875
DIP:DIP-2421N IntAct:P39875 MINT:MINT-553509 STRING:P39875
EnsemblFungi:YOR033C GeneID:854198 KEGG:sce:YOR033C CYGD:YOR033c
HOGENOM:HOG000112416 NextBio:976029 Genevestigator:P39875
GermOnline:YOR033C Uniprot:P39875
Length = 702
Score = 141 (54.7 bits), Expect = 3.6e-06, P = 3.6e-06
Identities = 42/150 (28%), Positives = 74/150 (49%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMT-FSEARKLPVQEF-HLEKV 118
AP EA++Q + + V +ED D L FG L+ + + E ++ F L K
Sbjct: 147 APFEADSQMVYLEQKNIVQGIISEDSDLLVFGCRRLITKLNDYGECLEICRDNFIKLPKK 206
Query: 119 LEGMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTK-KYTVP 177
L++EE I + L GCDY + I +G A++L++ +IE+I+ +I + K +P
Sbjct: 207 FPLGSLTNEEIITMVCLSGCDYTNGIPKVGLITAMKLVRRFNTIERIILSIQREGKLMIP 266
Query: 178 EGWL--YKEARELFRHPEVADPETIEFIDL 205
+ ++ Y+ A F+ V P + + L
Sbjct: 267 DTYINEYEAAVLAFQFQRVFCPIRKKIVSL 296
>SGD|S000002671 [details] [associations]
symbol:DIN7 "Mitochondrial nuclease functioning in DNA repair
and replication" species:4932 "Saccharomyces cerevisiae"
[GO:0005739 "mitochondrion" evidence=IDA] [GO:0046872 "metal ion
binding" evidence=IEA] [GO:0006281 "DNA repair"
evidence=IEA;ISS;IDA] [GO:0004519 "endonuclease activity"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0006974
"response to DNA damage stimulus" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0016788 "hydrolase activity,
acting on ester bonds" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003824 "catalytic activity" evidence=IEA]
[GO:0004518 "nuclease activity" evidence=IEA;ISS] [GO:0090305
"nucleic acid phosphodiester bond hydrolysis" evidence=IEA]
InterPro:IPR006084 InterPro:IPR006085 InterPro:IPR006086
InterPro:IPR008918 InterPro:IPR019974 InterPro:IPR020045
Pfam:PF00752 Pfam:PF00867 PRINTS:PR00853 PROSITE:PS00841
PROSITE:PS00842 SMART:SM00279 SMART:SM00484 SMART:SM00485
SGD:S000002671 GO:GO:0005739 GO:GO:0005634 GO:GO:0046872
GO:GO:0003677 GO:GO:0006281 EMBL:BK006938 GO:GO:0004519 EMBL:Z70202
EMBL:Z68290 GO:GO:0004518 RefSeq:NP_010553.3 GeneID:851860
KEGG:sce:YDR267C EMBL:X90707 PIR:S61118 RefSeq:NP_010549.3
ProteinModelPortal:Q12086 SMR:Q12086 DIP:DIP-5214N IntAct:Q12086
MINT:MINT-493226 STRING:Q12086 EnsemblFungi:YDR263C GeneID:851856
KEGG:sce:YDR263C CYGD:YDR263c eggNOG:COG0258
GeneTree:ENSGT00510000047676 OrthoDB:EOG44QX8J NextBio:969788
Genevestigator:Q12086 GermOnline:YDR263C PANTHER:PTHR11081
SUPFAM:SSF47807 Uniprot:Q12086
Length = 430
Score = 138 (53.6 bits), Expect = 3.6e-06, P = 3.6e-06
Identities = 35/117 (29%), Positives = 59/117 (50%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVLE 120
AP EA+ Q + K G + +ED D L FG L+ + + + L + + + E
Sbjct: 147 APFEADPQMVYLEKMGLIQGIISEDSDLLVFGCKTLITKLN-DQGKALEISKDDFSALPE 205
Query: 121 GM---ELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENID-TKK 173
ELS ++F +L L GCDY I +G A++++K + ++ IL I+ T+K
Sbjct: 206 NFPLGELSEQQFRNLVCLAGCDYTSGIWKVGVVTAMKIVKRYSEMKDILIQIERTEK 262
>WB|WBGene00019004 [details] [associations]
symbol:xpg-1 species:6239 "Caenorhabditis elegans"
[GO:0004518 "nuclease activity" evidence=IEA] [GO:0006281 "DNA
repair" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003824 "catalytic activity" evidence=IEA] [GO:0009792 "embryo
development ending in birth or egg hatching" evidence=IMP]
InterPro:IPR006084 InterPro:IPR006085 InterPro:IPR006086
InterPro:IPR008918 InterPro:IPR020045 Pfam:PF00752 Pfam:PF00867
PRINTS:PR00853 SMART:SM00279 SMART:SM00484 SMART:SM00485
GO:GO:0009792 GO:GO:0003677 GO:GO:0006281 GO:GO:0090305
GO:GO:0004518 EMBL:FO081416 eggNOG:COG0258 PANTHER:PTHR11081
SUPFAM:SSF47807 GeneTree:ENSGT00640000091542 RefSeq:NP_491891.2
ProteinModelPortal:O44737 SMR:O44737 STRING:O44737 PaxDb:O44737
EnsemblMetazoa:F57B10.6 GeneID:186441 KEGG:cel:CELE_F57B10.6
UCSC:F57B10.6 CTD:186441 WormBase:F57B10.6 HOGENOM:HOG000019794
InParanoid:O44737 OMA:MIPQDSK NextBio:931854 Uniprot:O44737
Length = 820
Score = 141 (54.7 bits), Expect = 4.4e-06, P = 4.4e-06
Identities = 38/120 (31%), Positives = 64/120 (53%)
Query: 60 KAPCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVL 119
++P EAEAQC + + G V ++D D FG+ + RHM FS+ R+ VQ + E+
Sbjct: 485 ESPGEAEAQCVELERLGLVDGVVSDDSDVWAFGAQHVYRHM-FSKNRR--VQRYG-EQTT 540
Query: 120 EGME------LSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKK 173
+ L E++I + +L G DYC + +G A+EL+ E+ +E ++N + K
Sbjct: 541 ANRDNCKLFCLQREDYISIALLSGGDYCAGLVKVGAIGALELVSEY--VECRIDNTNDLK 598
Score = 125 (49.1 bits), Expect = 0.00024, P = 0.00024
Identities = 34/109 (31%), Positives = 56/109 (51%)
Query: 303 IELVADVAPSSIRESRKICIDASMSLYQFLIAVRSEGNQLMSVDGEPTSHLMGTFYRTIR 362
+E A P E +K+ ID S+ +YQ +A S+ +P HL R +
Sbjct: 10 VEPTATEIPLECLEGKKLAIDVSIWIYQAQLAYPSD---------QPFPHLRLLVNRLSK 60
Query: 363 LVEHGLKPIYVFDG-KPPTLKSGELNKRMEKREDAQKALAKAQEQGKLK 410
L+ + ++P++VFDG + P LK L R +KR++ L +++ GKLK
Sbjct: 61 LLFYKIRPVFVFDGPQVPPLKRQVLEARRQKRQNDDDILKNSKKMGKLK 109
>RGD|1559792 [details] [associations]
symbol:Gen1 "Gen endonuclease homolog 1 (Drosophila)"
species:10116 "Rattus norvegicus" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0004518 "nuclease activity" evidence=IEA]
[GO:0006281 "DNA repair" evidence=IEA] InterPro:IPR006084
InterPro:IPR006085 InterPro:IPR006086 InterPro:IPR008918
InterPro:IPR020045 Pfam:PF00752 Pfam:PF00867 PRINTS:PR00853
SMART:SM00279 SMART:SM00484 SMART:SM00485 RGD:1559792 GO:GO:0003677
GO:GO:0006281 GO:GO:0090305 GO:GO:0004518 EMBL:CH473947
PANTHER:PTHR11081 SUPFAM:SSF47807 GeneTree:ENSGT00640000091478
KO:K15338 CTD:348654 OrthoDB:EOG4T1HKR IPI:IPI00360342
RefSeq:NP_001100187.1 UniGene:Rn.162850 Ensembl:ENSRNOT00000006470
GeneID:298884 KEGG:rno:298884 NextBio:644458 Uniprot:D3ZVS5
Length = 908
Score = 141 (54.7 bits), Expect = 5.0e-06, P = 5.0e-06
Identities = 45/163 (27%), Positives = 78/163 (47%)
Query: 60 KAPCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLP-VQEFHLEKV 118
+A EAEA CA + +G V T D DA +G+ + R+ T + K P V + + +
Sbjct: 130 QAAGEAEAMCAYLNASGHVDGCLTNDGDAFLYGAQTVYRNFTMNT--KDPHVDCYTVSSI 187
Query: 119 LEGMELSHEEFIDLCILLGCDYCDS-IRGIGPKRAIELI---KEHRSIEKILENIDTKKY 174
+ L + + L +LLGCDY + G+G ++A++L+ K +++ + + Y
Sbjct: 188 KSKLGLDRDALVGLAVLLGCDYLPKGVPGVGKEQALKLLQILKGQSLLQRFNQWTEEPGY 247
Query: 175 TVPEGWLYKEAR-ELFRHPEVADPETIEFIDLCILLGCD-YCD 215
+VP+ K + HP P+ E + C L D YC+
Sbjct: 248 SVPQSAAKKVVHCSVCSHP--GSPKDHER-NGCTLCKSDRYCE 287
>UNIPROTKB|Q3B7N6 [details] [associations]
symbol:ERCC5 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0047485 "protein N-terminus binding" evidence=ISS]
[GO:0043066 "negative regulation of apoptotic process"
evidence=ISS] [GO:0042803 "protein homodimerization activity"
evidence=ISS] [GO:0016591 "DNA-directed RNA polymerase II,
holoenzyme" evidence=ISS] [GO:0010225 "response to UV-C"
evidence=ISS] [GO:0009411 "response to UV" evidence=ISS]
[GO:0006295 "nucleotide-excision repair, DNA incision, 3'-to
lesion" evidence=ISS] [GO:0006283 "transcription-coupled
nucleotide-excision repair" evidence=ISS] [GO:0005675 "holo TFIIH
complex" evidence=ISS] [GO:0005634 "nucleus" evidence=ISS]
[GO:0004520 "endodeoxyribonuclease activity" evidence=ISS]
[GO:0003697 "single-stranded DNA binding" evidence=ISS] [GO:0003690
"double-stranded DNA binding" evidence=ISS] [GO:0000405 "bubble DNA
binding" evidence=ISS] InterPro:IPR001044 InterPro:IPR006084
InterPro:IPR006085 InterPro:IPR006086 InterPro:IPR008918
InterPro:IPR019974 InterPro:IPR020045 Pfam:PF00752 Pfam:PF00867
PRINTS:PR00066 PRINTS:PR00853 PROSITE:PS00841 PROSITE:PS00842
SMART:SM00279 SMART:SM00484 SMART:SM00485 GO:GO:0005634
GO:GO:0043066 GO:GO:0042803 GO:GO:0003690 GO:GO:0003697
GO:GO:0004520 GO:GO:0047485 GO:GO:0010225 GO:GO:0000405
GO:GO:0006283 eggNOG:COG0258 PANTHER:PTHR11081 SUPFAM:SSF47807
GO:GO:0006295 CTD:2073 HOVERGEN:HBG051501 KO:K10846
OrthoDB:EOG4CNQQZ PANTHER:PTHR11081:SF1 TIGRFAMs:TIGR00600
HOGENOM:HOG000131367 GeneTree:ENSGT00640000091542 EMBL:DAAA02034800
EMBL:BC107528 IPI:IPI00691871 RefSeq:NP_001030353.1
UniGene:Bt.39059 STRING:Q3B7N6 Ensembl:ENSBTAT00000046365
GeneID:509602 KEGG:bta:509602 InParanoid:Q3B7N6 NextBio:20869041
Uniprot:Q3B7N6
Length = 1201
Score = 119 (46.9 bits), Expect = 5.6e-06, Sum P(2) = 5.6e-06
Identities = 31/99 (31%), Positives = 49/99 (49%)
Query: 60 KAPCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVL 119
+AP EAEAQCA + + T T+D D FG+ + ++ F K V+ +
Sbjct: 801 EAPMEAEAQCAILDLTDQTSGTITDDSDIWLFGARHVYKN--FFNKNKF-VEYYQYVDFH 857
Query: 120 EGMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKE 158
+ L + I+L LLG DY + I +G A+E++ E
Sbjct: 858 NQLGLDRNKLINLAYLLGSDYTEGIPTVGCVTAMEILNE 896
Score = 116 (45.9 bits), Expect = 1.2e-05, Sum P(2) = 1.2e-05
Identities = 30/87 (34%), Positives = 50/87 (57%)
Query: 309 VAPSSIRESRKICIDASMSLYQFLIAVRSE-GNQLMSVDGEPTSHLMGTFYRTIRLVEHG 367
++P ++ E + + +D S+ L Q L VR GN S++ +HL+ F+R +L+
Sbjct: 17 ISPETL-EGKILAVDISIWLNQALKGVRDRHGN---SIEN---AHLLTLFHRLCKLLFFR 69
Query: 368 LKPIYVFDGKPPTLKSGELNKRMEKRE 394
++PI+VFDG P LK L KR K++
Sbjct: 70 IRPIFVFDGDAPLLKKQTLAKRRHKKD 96
Score = 72 (30.4 bits), Expect = 5.6e-06, Sum P(2) = 5.6e-06
Identities = 19/68 (27%), Positives = 37/68 (54%)
Query: 404 QEQGKLKWSDPDEDGLVKYLCGDKNFAEDRIRNGAK--KLLKARST-TTQGRLDSFFTIR 460
+ +G W PD D + ++ C + F +R + +LK + TQ R+DSFF +
Sbjct: 959 ESKGSFLWGKPDLDKIREF-C-QRYFGWNRTKTDESLFPVLKQLNVHQTQLRIDSFFRLA 1016
Query: 461 REEKRKSR 468
++EK++++
Sbjct: 1017 QQEKQEAK 1024
>UNIPROTKB|P28715 [details] [associations]
symbol:ERCC5 "DNA repair protein complementing XP-G cells"
species:9606 "Homo sapiens" [GO:0046872 "metal ion binding"
evidence=IEA] [GO:0008340 "determination of adult lifespan"
evidence=IEA] [GO:0035264 "multicellular organism growth"
evidence=IEA] [GO:0004520 "endodeoxyribonuclease activity"
evidence=IDA] [GO:0006295 "nucleotide-excision repair, DNA
incision, 3'-to lesion" evidence=IMP;IDA] [GO:0005515 "protein
binding" evidence=IPI] [GO:0005675 "holo TFIIH complex"
evidence=IDA] [GO:0009411 "response to UV" evidence=IDA;IMP]
[GO:0043066 "negative regulation of apoptotic process"
evidence=IMP] [GO:0042803 "protein homodimerization activity"
evidence=IPI] [GO:0006283 "transcription-coupled
nucleotide-excision repair" evidence=IMP;TAS] [GO:0016591
"DNA-directed RNA polymerase II, holoenzyme" evidence=IDA]
[GO:0000405 "bubble DNA binding" evidence=IDA] [GO:0010225
"response to UV-C" evidence=IMP] [GO:0047485 "protein N-terminus
binding" evidence=IPI] [GO:0003690 "double-stranded DNA binding"
evidence=IDA] [GO:0003697 "single-stranded DNA binding"
evidence=IDA] [GO:0005634 "nucleus" evidence=IDA] [GO:0009650 "UV
protection" evidence=IGI] [GO:0000718 "nucleotide-excision repair,
DNA damage removal" evidence=TAS] [GO:0004519 "endonuclease
activity" evidence=TAS] [GO:0005654 "nucleoplasm" evidence=TAS]
[GO:0006281 "DNA repair" evidence=TAS] [GO:0006289
"nucleotide-excision repair" evidence=TAS] Reactome:REACT_216
InterPro:IPR001044 InterPro:IPR006084 InterPro:IPR006085
InterPro:IPR006086 InterPro:IPR008918 InterPro:IPR019974
InterPro:IPR020045 Pfam:PF00752 Pfam:PF00867 PRINTS:PR00066
PRINTS:PR00853 PROSITE:PS00841 PROSITE:PS00842 SMART:SM00279
SMART:SM00484 SMART:SM00485 GO:GO:0008340 GO:GO:0043066
GO:GO:0005654 GO:GO:0046872 GO:GO:0003690 GO:GO:0003697
GO:GO:0035264 GO:GO:0004520 GO:GO:0010225 EMBL:AL157769
GO:GO:0000405 GO:GO:0009650 GO:GO:0000718 GO:GO:0006283
eggNOG:COG0258 PANTHER:PTHR11081 SUPFAM:SSF47807 GO:GO:0006295
Orphanet:1466 Orphanet:220295 EMBL:X69978 EMBL:D16305 EMBL:L20046
EMBL:AF255442 EMBL:AF255431 EMBL:AF255433 EMBL:AF255434
EMBL:AF255435 EMBL:AF255436 EMBL:AF255437 EMBL:AF255438
EMBL:AF255439 EMBL:AF255440 EMBL:AF255441 EMBL:AF462447
EMBL:AF550128 EMBL:BC031522 EMBL:X71341 EMBL:X71342 IPI:IPI00477535
IPI:IPI00848102 PIR:I58009 PIR:S35993 RefSeq:NP_000114.2
UniGene:Hs.258429 ProteinModelPortal:P28715 SMR:P28715 DIP:DIP-750N
IntAct:P28715 MINT:MINT-192239 STRING:P28715 PhosphoSite:P28715
DMDM:205371791 PaxDb:P28715 PRIDE:P28715 DNASU:2073
Ensembl:ENST00000355739 Ensembl:ENST00000375954 GeneID:2073
KEGG:hsa:2073 UCSC:uc001vpw.3 CTD:2073 GeneCards:GC13P103459
HGNC:HGNC:3437 MIM:133530 MIM:278780 neXtProt:NX_P28715
Orphanet:276267 PharmGKB:PA27851 HOVERGEN:HBG051501
InParanoid:P28715 KO:K10846 OrthoDB:EOG4CNQQZ BindingDB:P28715
ChEMBL:CHEMBL4736 GenomeRNAi:2073 NextBio:8433 ArrayExpress:P28715
Bgee:P28715 CleanEx:HS_ERCC5 Genevestigator:P28715
GermOnline:ENSG00000134899 PANTHER:PTHR11081:SF1 TIGRFAMs:TIGR00600
Uniprot:P28715
Length = 1186
Score = 123 (48.4 bits), Expect = 8.4e-06, Sum P(2) = 8.4e-06
Identities = 34/110 (30%), Positives = 54/110 (49%)
Query: 60 KAPCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVL 119
+AP EAEAQCA + + T T+D D FG+ + R+ F K V+ +
Sbjct: 785 QAPMEAEAQCAILDLTDQTSGTITDDSDIWLFGARHVYRN--FFNKNKF-VEYYQYVDFH 841
Query: 120 EGMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEH--RSIEKILE 167
+ L + I+L LLG DY + I +G A+E++ E +E +L+
Sbjct: 842 NQLGLDRNKLINLAYLLGSDYTEGIPTVGCVTAMEILNEFPGHGLEPLLK 891
Score = 119 (46.9 bits), Expect = 2.2e-05, Sum P(2) = 2.2e-05
Identities = 34/99 (34%), Positives = 55/99 (55%)
Query: 309 VAPSSIRESRKICIDASMSLYQFLIAVRSE-GNQLMSVDGEPTSHLMGTFYRTIRLVEHG 367
V+P ++ E + + +D S+ L Q L VR GN S++ P HL+ F+R +L+
Sbjct: 17 VSPEAL-EGKILAVDISIWLNQALKGVRDRHGN---SIEN-P--HLLTLFHRLCKLLFFR 69
Query: 368 LKPIYVFDGKPPTLKSGELNKRMEKREDAQKALAKAQEQ 406
++PI+VFDG P LK L KR ++++ A K E+
Sbjct: 70 IRPIFVFDGDAPLLKKQTLVKRRQRKDLASSDSRKTTEK 108
Score = 66 (28.3 bits), Expect = 8.4e-06, Sum P(2) = 8.4e-06
Identities = 19/66 (28%), Positives = 33/66 (50%)
Query: 406 QGKLKWSDPDEDGLVKYLCGDKNFAEDRIRNGAK--KLLKARSTT-TQGRLDSFFTIRRE 462
+G W PD D + ++ C + F +R + +LK TQ R+DSFF + ++
Sbjct: 945 KGSFLWGKPDLDKIREF-C-QRYFGWNRTKTDESLFPVLKQLDAQQTQLRIDSFFRLAQQ 1002
Query: 463 EKRKSR 468
EK ++
Sbjct: 1003 EKEDAK 1008
>FB|FBgn0002887 [details] [associations]
symbol:mus201 "mutagen-sensitive 201" species:7227
"Drosophila melanogaster" [GO:0006284 "base-excision repair"
evidence=ISS] [GO:0000014 "single-stranded DNA specific
endodeoxyribonuclease activity" evidence=ISS] [GO:0006289
"nucleotide-excision repair" evidence=IEA;NAS] [GO:0005634
"nucleus" evidence=IEA] [GO:0003697 "single-stranded DNA binding"
evidence=IEA] InterPro:IPR001044 InterPro:IPR006084
InterPro:IPR006085 InterPro:IPR006086 InterPro:IPR008918
InterPro:IPR019974 InterPro:IPR020045 Pfam:PF00752 Pfam:PF00867
PRINTS:PR00853 PROSITE:PS00841 PROSITE:PS00842 SMART:SM00279
SMART:SM00484 SMART:SM00485 GO:GO:0005634 EMBL:AE014134
GO:GO:0003697 GO:GO:0090305 GO:GO:0004519 InterPro:IPR003903
SMART:SM00726 PROSITE:PS50330 GO:GO:0006289 eggNOG:COG0258
PANTHER:PTHR11081 SUPFAM:SSF47807 KO:K10846 PANTHER:PTHR11081:SF1
OMA:VYKNMFN GeneTree:ENSGT00640000091542 RefSeq:NP_001027232.1
UniGene:Dm.3099 ProteinModelPortal:Q4LDP6 SMR:Q4LDP6 STRING:Q4LDP6
PaxDb:Q4LDP6 PRIDE:Q4LDP6 EnsemblMetazoa:FBtr0005673 GeneID:3772069
KEGG:dme:Dmel_CG10890 UCSC:CG10890-RA CTD:3772069
FlyBase:FBgn0002887 InParanoid:Q4LDP6 OrthoDB:EOG4H44JN
PhylomeDB:Q4LDP6 NextBio:852313 ArrayExpress:Q4LDP6 Uniprot:Q4LDP6
Length = 1257
Score = 139 (54.0 bits), Expect = 1.2e-05, P = 1.2e-05
Identities = 32/96 (33%), Positives = 50/96 (52%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVLE 120
AP EAEAQCA + + T T+D D FG + ++ F++ + V EF E++ +
Sbjct: 898 APMEAEAQCAFLNATDLTHGTITDDSDIWLFGGRTVYKNF-FAQNKH--VMEFRAEQIEQ 954
Query: 121 GMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELI 156
+ + I L L+G DY I GIG A+E++
Sbjct: 955 TFNCNRGKLIQLACLVGSDYTTGIHGIGAVTALEIL 990
>UNIPROTKB|E1B8D0 [details] [associations]
symbol:GEN1 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0006281 "DNA repair" evidence=IEA] [GO:0004518
"nuclease activity" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR006084 InterPro:IPR006085
InterPro:IPR006086 InterPro:IPR008918 InterPro:IPR020045
Pfam:PF00752 Pfam:PF00867 PRINTS:PR00853 SMART:SM00279
SMART:SM00484 SMART:SM00485 GO:GO:0003677 GO:GO:0006281
GO:GO:0090305 GO:GO:0004518 PANTHER:PTHR11081 SUPFAM:SSF47807
GeneTree:ENSGT00640000091478 OMA:FFRISYL EMBL:DAAA02031803
IPI:IPI00842908 PRIDE:E1B8D0 Ensembl:ENSBTAT00000043571
Uniprot:E1B8D0
Length = 914
Score = 137 (53.3 bits), Expect = 1.4e-05, P = 1.4e-05
Identities = 34/100 (34%), Positives = 55/100 (55%)
Query: 60 KAPCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLP-VQEFHLEKV 118
+A EAEA CA + +G V T D DA +G+ + R+ T + K P V + + +
Sbjct: 130 QAAGEAEAMCAYLNASGYVDGCLTNDGDAFLYGAQTVYRNFTMNT--KDPHVDCYTMSSI 187
Query: 119 LEGMELSHEEFIDLCILLGCDYCDS-IRGIGPKRAIELIK 157
+ L+ + + L ILLGCDY + G+G ++A++LIK
Sbjct: 188 KSKLGLNRDALVGLAILLGCDYLPKGVPGVGKEQALKLIK 227
>UNIPROTKB|J9P9A3 [details] [associations]
symbol:BIVM "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0006289
"nucleotide-excision repair" evidence=IEA] [GO:0004519
"endonuclease activity" evidence=IEA] [GO:0003697 "single-stranded
DNA binding" evidence=IEA] InterPro:IPR001044 InterPro:IPR006084
InterPro:IPR006085 InterPro:IPR006086 InterPro:IPR008918
InterPro:IPR019974 InterPro:IPR020045 Pfam:PF00752 Pfam:PF00867
PRINTS:PR00066 PRINTS:PR00853 PROSITE:PS00841 PROSITE:PS00842
SMART:SM00279 SMART:SM00484 SMART:SM00485 GO:GO:0005634
GO:GO:0003697 GO:GO:0090305 GO:GO:0004519 GO:GO:0006289
PANTHER:PTHR11081 SUPFAM:SSF47807 KO:K10846 PANTHER:PTHR11081:SF1
TIGRFAMs:TIGR00600 GeneTree:ENSGT00640000091542 EMBL:AAEX03013354
RefSeq:XP_003639860.1 Ensembl:ENSCAFT00000047499 GeneID:100855935
KEGG:cfa:100855935 Uniprot:J9P9A3
Length = 1185
Score = 120 (47.3 bits), Expect = 1.7e-05, Sum P(2) = 1.7e-05
Identities = 33/110 (30%), Positives = 54/110 (49%)
Query: 60 KAPCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVL 119
+AP EAEAQCA + + T T+D D FG+ + ++ F K V+ +
Sbjct: 786 EAPMEAEAQCAILDLTDQTSGTITDDSDIWLFGARHVYKN--FFNKNKF-VEYYQYVDFH 842
Query: 120 EGMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEH--RSIEKILE 167
+ L + I+L LLG DY + I +G A+E++ E +E +L+
Sbjct: 843 NQLGLDRNKLINLAYLLGSDYTEGIPTVGCVTAMEILNEFPGHGLEPLLK 892
Score = 116 (45.9 bits), Expect = 4.7e-05, Sum P(2) = 4.7e-05
Identities = 33/99 (33%), Positives = 53/99 (53%)
Query: 309 VAPSSIRESRKICIDASMSLYQFLIAVRS-EGNQLMSVDGEPTSHLMGTFYRTIRLVEHG 367
V+P ++ E + + +D S+ L Q L VR GN + G +HL+ F+R +L+
Sbjct: 17 VSPETL-EGKILAVDISIWLNQALRGVRDCHGNSI----GN--AHLLTLFHRLCKLLFFR 69
Query: 368 LKPIYVFDGKPPTLKSGELNKRMEKREDAQKALAKAQEQ 406
++PI+VFDG P LK L KR +++ A K E+
Sbjct: 70 IRPIFVFDGDAPLLKKQTLAKRRHRKDLAATDSRKTTEK 108
Score = 66 (28.3 bits), Expect = 1.7e-05, Sum P(2) = 1.7e-05
Identities = 18/66 (27%), Positives = 35/66 (53%)
Query: 406 QGKLKWSDPDEDGLVKYLCGDKNFAEDRIRNGAK--KLLKA-RSTTTQGRLDSFFTIRRE 462
+G W PD D + ++ C + F +R + +LK + TQ R+DSFF + ++
Sbjct: 946 RGSFLWGKPDLDKIREF-C-QRYFGWNRTKTDESLFPVLKQLNAQQTQLRIDSFFRLAQQ 1003
Query: 463 EKRKSR 468
E++ ++
Sbjct: 1004 ERQDAK 1009
>UNIPROTKB|F1P266 [details] [associations]
symbol:ERCC5 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000405 "bubble DNA binding" evidence=IEA] [GO:0003690
"double-stranded DNA binding" evidence=IEA] [GO:0003697
"single-stranded DNA binding" evidence=IEA] [GO:0004520
"endodeoxyribonuclease activity" evidence=IEA] [GO:0005675 "holo
TFIIH complex" evidence=IEA] [GO:0006283 "transcription-coupled
nucleotide-excision repair" evidence=IEA] [GO:0006295
"nucleotide-excision repair, DNA incision, 3'-to lesion"
evidence=IEA] [GO:0008340 "determination of adult lifespan"
evidence=IEA] [GO:0009650 "UV protection" evidence=IEA] [GO:0010225
"response to UV-C" evidence=IEA] [GO:0035264 "multicellular
organism growth" evidence=IEA] [GO:0042803 "protein
homodimerization activity" evidence=IEA] [GO:0043066 "negative
regulation of apoptotic process" evidence=IEA] [GO:0047485 "protein
N-terminus binding" evidence=IEA] InterPro:IPR001044
InterPro:IPR006084 InterPro:IPR006085 InterPro:IPR006086
InterPro:IPR008918 InterPro:IPR019974 InterPro:IPR020045
Pfam:PF00752 Pfam:PF00867 PRINTS:PR00066 PRINTS:PR00853
PROSITE:PS00841 PROSITE:PS00842 SMART:SM00279 SMART:SM00484
SMART:SM00485 GO:GO:0043066 GO:GO:0003690 GO:GO:0003697
GO:GO:0004520 GO:GO:0010225 GO:GO:0000405 GO:GO:0009650
GO:GO:0005675 GO:GO:0006283 PANTHER:PTHR11081 SUPFAM:SSF47807
GO:GO:0006295 PANTHER:PTHR11081:SF1 GeneTree:ENSGT00640000091542
EMBL:AADN02029216 IPI:IPI00655481 Ensembl:ENSGALT00000027237
ArrayExpress:F1P266 Uniprot:F1P266
Length = 1111
Score = 124 (48.7 bits), Expect = 2.3e-05, Sum P(2) = 2.3e-05
Identities = 34/110 (30%), Positives = 55/110 (50%)
Query: 60 KAPCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVL 119
+AP EAEAQCA + + T T+D D FG+ + ++ FS R V+ +
Sbjct: 733 EAPMEAEAQCAILDLTDQTSGTITDDSDVWLFGARHVYKNF-FS--RNKYVEYYQYIDFQ 789
Query: 120 EGMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEH--RSIEKILE 167
+ L + I+L LLG DY + I +G A+E++ E +E +L+
Sbjct: 790 NQLGLDRSKLINLAYLLGSDYTEGIPNVGFVTAMEILNEFPGHGLEPLLK 839
Score = 60 (26.2 bits), Expect = 2.3e-05, Sum P(2) = 2.3e-05
Identities = 19/65 (29%), Positives = 33/65 (50%)
Query: 404 QEQGKLKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKL--LKARSTT-TQGRLDSFFTIR 460
+ +G W PD + + ++ C D +F R + L +K + TQ R+DSFF +
Sbjct: 891 ETRGSFIWGKPDVEQIREF-CKD-HFGWTRTKTDEILLPVIKQLNLQQTQLRIDSFFRLA 948
Query: 461 REEKR 465
+ EK+
Sbjct: 949 QHEKQ 953
>UNIPROTKB|F1P953 [details] [associations]
symbol:BIVM "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0006289
"nucleotide-excision repair" evidence=IEA] [GO:0004519
"endonuclease activity" evidence=IEA] [GO:0003697 "single-stranded
DNA binding" evidence=IEA] InterPro:IPR001044 InterPro:IPR006084
InterPro:IPR006085 InterPro:IPR006086 InterPro:IPR008918
InterPro:IPR019974 InterPro:IPR020045 Pfam:PF00752 Pfam:PF00867
PRINTS:PR00066 PRINTS:PR00853 PROSITE:PS00841 PROSITE:PS00842
SMART:SM00279 SMART:SM00484 SMART:SM00485 GO:GO:0005634
GO:GO:0003697 GO:GO:0090305 GO:GO:0004519 GO:GO:0006289
PANTHER:PTHR11081 SUPFAM:SSF47807 PANTHER:PTHR11081:SF1
TIGRFAMs:TIGR00600 GeneTree:ENSGT00640000091542 OMA:MSNISIW
EMBL:AAEX03013354 Ensembl:ENSCAFT00000009681 Uniprot:F1P953
Length = 1600
Score = 120 (47.3 bits), Expect = 3.4e-05, Sum P(2) = 3.4e-05
Identities = 33/110 (30%), Positives = 54/110 (49%)
Query: 60 KAPCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVL 119
+AP EAEAQCA + + T T+D D FG+ + ++ F K V+ +
Sbjct: 1201 EAPMEAEAQCAILDLTDQTSGTITDDSDIWLFGARHVYKN--FFNKNKF-VEYYQYVDFH 1257
Query: 120 EGMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEH--RSIEKILE 167
+ L + I+L LLG DY + I +G A+E++ E +E +L+
Sbjct: 1258 NQLGLDRNKLINLAYLLGSDYTEGIPTVGCVTAMEILNEFPGHGLEPLLK 1307
Score = 66 (28.3 bits), Expect = 3.4e-05, Sum P(2) = 3.4e-05
Identities = 18/66 (27%), Positives = 35/66 (53%)
Query: 406 QGKLKWSDPDEDGLVKYLCGDKNFAEDRIRNGAK--KLLKA-RSTTTQGRLDSFFTIRRE 462
+G W PD D + ++ C + F +R + +LK + TQ R+DSFF + ++
Sbjct: 1361 RGSFLWGKPDLDKIREF-C-QRYFGWNRTKTDESLFPVLKQLNAQQTQLRIDSFFRLAQQ 1418
Query: 463 EKRKSR 468
E++ ++
Sbjct: 1419 ERQDAK 1424
>CGD|CAL0003631 [details] [associations]
symbol:EXO1 species:5476 "Candida albicans" [GO:0005634
"nucleus" evidence=IEA] [GO:0031860 "telomeric 3' overhang
formation" evidence=IEA] [GO:0006298 "mismatch repair"
evidence=IEA] [GO:0000706 "meiotic DNA double-strand break
processing" evidence=IEA] [GO:0031292 "gene conversion at
mating-type locus, DNA double-strand break processing"
evidence=IEA] [GO:0008409 "5'-3' exonuclease activity"
evidence=IEA] [GO:0017108 "5'-flap endonuclease activity"
evidence=IEA] InterPro:IPR006084 InterPro:IPR006085
InterPro:IPR006086 InterPro:IPR008918 InterPro:IPR020045
Pfam:PF00752 Pfam:PF00867 PRINTS:PR00853 SMART:SM00279
SMART:SM00484 SMART:SM00485 CGD:CAL0003631 GO:GO:0003677
GO:GO:0006281 GO:GO:0090305 GO:GO:0004518 EMBL:AACQ01000063
EMBL:AACQ01000062 eggNOG:COG0258 PANTHER:PTHR11081 SUPFAM:SSF47807
KO:K10746 RefSeq:XP_716765.1 RefSeq:XP_716825.1
ProteinModelPortal:Q5A520 STRING:Q5A520 GeneID:3641527
GeneID:3641583 KEGG:cal:CaO19.8541 KEGG:cal:CaO19.926
Uniprot:Q5A520
Length = 699
Score = 132 (51.5 bits), Expect = 3.4e-05, P = 3.4e-05
Identities = 40/142 (28%), Positives = 68/142 (47%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVLE 120
AP EA+ Q + K G V +ED D L FG L+ + + + + +KV E
Sbjct: 147 APYEADPQMVYLEKMGIVDGILSEDSDLLIFGCKKLITKLK-DDGTCVEINRDKFDKVKE 205
Query: 121 GMELSH---EEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVP 177
L+ E+ + +L GCDY + GIG K A +L++++ + KI+ + + +P
Sbjct: 206 IPYLNQYNMEQLRLVAMLSGCDYTKGVPGIGLKTAFQLVRKYNNFTKIMIALRSMGKKIP 265
Query: 178 EGWL--YKEARELFRHPEVADP 197
+ + K A F+ +V DP
Sbjct: 266 DTFSDEVKLANLAFQFQKVFDP 287
>RGD|1586176 [details] [associations]
symbol:Ercc5 "excision repair cross-complementing rodent repair
deficiency, complementation group 5" species:10116 "Rattus
norvegicus" [GO:0000405 "bubble DNA binding" evidence=ISO]
[GO:0003674 "molecular_function" evidence=ND] [GO:0003690
"double-stranded DNA binding" evidence=ISO] [GO:0003697
"single-stranded DNA binding" evidence=IEA;ISO] [GO:0004519
"endonuclease activity" evidence=IEA] [GO:0004520
"endodeoxyribonuclease activity" evidence=ISO] [GO:0005575
"cellular_component" evidence=ND] [GO:0005634 "nucleus"
evidence=IEA;ISO] [GO:0006281 "DNA repair" evidence=ISO]
[GO:0006283 "transcription-coupled nucleotide-excision repair"
evidence=ISO] [GO:0006289 "nucleotide-excision repair"
evidence=IEA;ISO] [GO:0006295 "nucleotide-excision repair, DNA
incision, 3'-to lesion" evidence=ISO] [GO:0008150
"biological_process" evidence=ND] [GO:0008340 "determination of
adult lifespan" evidence=ISO] [GO:0009411 "response to UV"
evidence=ISO] [GO:0009650 "UV protection" evidence=ISO] [GO:0010225
"response to UV-C" evidence=ISO] [GO:0035264 "multicellular
organism growth" evidence=ISO] [GO:0042803 "protein
homodimerization activity" evidence=ISO] [GO:0043066 "negative
regulation of apoptotic process" evidence=ISO] [GO:0047485 "protein
N-terminus binding" evidence=ISO] [GO:0005675 "holo TFIIH complex"
evidence=ISO] [GO:0016591 "DNA-directed RNA polymerase II,
holoenzyme" evidence=ISO] InterPro:IPR001044 InterPro:IPR006084
InterPro:IPR006085 InterPro:IPR019974 Pfam:PF00752 PRINTS:PR00066
PRINTS:PR00853 PROSITE:PS00841 SMART:SM00485 RGD:1586176
GO:GO:0005634 GO:GO:0003697 GO:GO:0090305 GO:GO:0004519
GO:GO:0006289 PANTHER:PTHR11081 PANTHER:PTHR11081:SF1
IPI:IPI00357888 Ensembl:ENSRNOT00000014836 UCSC:RGD:1586176
ArrayExpress:D4A7R1 Uniprot:D4A7R1
Length = 242
Score = 124 (48.7 bits), Expect = 3.5e-05, P = 3.5e-05
Identities = 33/99 (33%), Positives = 54/99 (54%)
Query: 309 VAPSSIRESRKICIDASMSLYQFLIAVRSE-GNQLMSVDGEPTSHLMGTFYRTIRLVEHG 367
V+P ++ E + + +D S+ L Q L VR GN + + +HL+ F+R +L+
Sbjct: 17 VSPEAL-EGKVLAVDISIWLNQALKGVRDRHGNAIEN------AHLLTLFHRLCKLLFFR 69
Query: 368 LKPIYVFDGKPPTLKSGELNKRMEKREDAQKALAKAQEQ 406
++PI+VFDG P LK L KR +K++ A K E+
Sbjct: 70 IRPIFVFDGDAPLLKKQTLAKRRQKKDSASIDSRKTTEK 108
>UNIPROTKB|E1BC95 [details] [associations]
symbol:ERCC5 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0047485 "protein N-terminus binding" evidence=IEA]
[GO:0043066 "negative regulation of apoptotic process"
evidence=IEA] [GO:0042803 "protein homodimerization activity"
evidence=IEA] [GO:0035264 "multicellular organism growth"
evidence=IEA] [GO:0010225 "response to UV-C" evidence=IEA]
[GO:0009650 "UV protection" evidence=IEA] [GO:0008340
"determination of adult lifespan" evidence=IEA] [GO:0006295
"nucleotide-excision repair, DNA incision, 3'-to lesion"
evidence=IEA] [GO:0006283 "transcription-coupled
nucleotide-excision repair" evidence=IEA] [GO:0005675 "holo TFIIH
complex" evidence=IEA] [GO:0004520 "endodeoxyribonuclease activity"
evidence=IEA] [GO:0003697 "single-stranded DNA binding"
evidence=IEA] [GO:0003690 "double-stranded DNA binding"
evidence=IEA] [GO:0000405 "bubble DNA binding" evidence=IEA]
InterPro:IPR001044 InterPro:IPR006084 InterPro:IPR006085
InterPro:IPR006086 InterPro:IPR008918 InterPro:IPR019974
InterPro:IPR020045 Pfam:PF00752 Pfam:PF00867 PRINTS:PR00066
PRINTS:PR00853 PROSITE:PS00841 PROSITE:PS00842 SMART:SM00279
SMART:SM00484 SMART:SM00485 GO:GO:0005634 GO:GO:0003697
GO:GO:0090305 GO:GO:0004519 GO:GO:0006289 PANTHER:PTHR11081
SUPFAM:SSF47807 PANTHER:PTHR11081:SF1 TIGRFAMs:TIGR00600
GeneTree:ENSGT00640000091542 EMBL:DAAA02034800 IPI:IPI00923951
Ensembl:ENSBTAT00000061115 OMA:MSNISIW ArrayExpress:E1BC95
Uniprot:E1BC95
Length = 1615
Score = 119 (46.9 bits), Expect = 5.6e-05, Sum P(3) = 5.6e-05
Identities = 31/99 (31%), Positives = 49/99 (49%)
Query: 60 KAPCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVL 119
+AP EAEAQCA + + T T+D D FG+ + ++ F K V+ +
Sbjct: 1215 EAPMEAEAQCAILDLTDQTSGTITDDSDIWLFGARHVYKN--FFNKNKF-VEYYQYVDFH 1271
Query: 120 EGMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKE 158
+ L + I+L LLG DY + I +G A+E++ E
Sbjct: 1272 NQLGLDRNKLINLAYLLGSDYTEGIPTVGCVTAMEILNE 1310
Score = 72 (30.4 bits), Expect = 5.6e-05, Sum P(3) = 5.6e-05
Identities = 19/68 (27%), Positives = 37/68 (54%)
Query: 404 QEQGKLKWSDPDEDGLVKYLCGDKNFAEDRIRNGAK--KLLKARST-TTQGRLDSFFTIR 460
+ +G W PD D + ++ C + F +R + +LK + TQ R+DSFF +
Sbjct: 1373 ESKGSFLWGKPDLDKIREF-C-QRYFGWNRTKTDESLFPVLKQLNVHQTQLRIDSFFRLA 1430
Query: 461 REEKRKSR 468
++EK++++
Sbjct: 1431 QQEKQEAK 1438
Score = 37 (18.1 bits), Expect = 5.6e-05, Sum P(3) = 5.6e-05
Identities = 7/17 (41%), Positives = 12/17 (70%)
Query: 30 NGAKKLLKARSSTTQGR 46
NG K++ K ++S +GR
Sbjct: 131 NGKKQVSKKKTSDKKGR 147
>UNIPROTKB|E1BWF2 [details] [associations]
symbol:Gga.42587 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0004518
"nuclease activity" evidence=IEA] [GO:0006281 "DNA repair"
evidence=IEA] InterPro:IPR006084 InterPro:IPR006086
InterPro:IPR008918 InterPro:IPR020045 Pfam:PF00867 PRINTS:PR00853
SMART:SM00279 SMART:SM00484 GO:GO:0003677 GO:GO:0006281
GO:GO:0090305 GO:GO:0004518 PANTHER:PTHR11081 SUPFAM:SSF47807
GeneTree:ENSGT00640000091478 EMBL:AADN02018598 IPI:IPI00571137
Ensembl:ENSGALT00000026572 Uniprot:E1BWF2
Length = 538
Score = 132 (51.5 bits), Expect = 5.6e-05, Sum P(2) = 5.6e-05
Identities = 33/115 (28%), Positives = 59/115 (51%)
Query: 60 KAPCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVL 119
+A EAEA CA + G V T D D +G+ + R+ + +++ + + + +
Sbjct: 65 QAAGEAEAMCAYLNAKGHVDGCITNDGDVFLYGAQTVYRNFAMN-SKEPHLDCYTMSSIK 123
Query: 120 EGMELSHEEFIDLCILLGCDYCDS-IRGIGPKRAIELIKEHRSIEKILENIDTKK 173
E + E I L +LLGCDY I G+G ++A++LI+ R + +L+ + K
Sbjct: 124 EKLGCDRESLIGLAVLLGCDYLPKGIPGVGKEQALKLIETLRG-QNLLQRFEQWK 177
Score = 40 (19.1 bits), Expect = 5.6e-05, Sum P(2) = 5.6e-05
Identities = 17/63 (26%), Positives = 29/63 (46%)
Query: 240 GCDYCDSIRGIGPKRA----------IELIKEHRSIEKILENIDTKKYTVPEGWLYKEAR 289
GC +C+S R P + +E +K+ ++E +NI KK EG+ + E
Sbjct: 212 GCKFCESTRYCKPSDSKYCCPCEWHQLEQVKQASAVE---DNI-RKKAKSCEGFPFSEVI 267
Query: 290 ELF 292
+ F
Sbjct: 268 QEF 270
>UNIPROTKB|F1SCS5 [details] [associations]
symbol:GEN1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0006281 "DNA repair" evidence=IEA] [GO:0004518
"nuclease activity" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR006084 InterPro:IPR006085
InterPro:IPR006086 InterPro:IPR008918 InterPro:IPR020045
Pfam:PF00752 Pfam:PF00867 PRINTS:PR00853 SMART:SM00279
SMART:SM00484 SMART:SM00485 GO:GO:0003677 GO:GO:0006281
GO:GO:0090305 GO:GO:0004518 PANTHER:PTHR11081 SUPFAM:SSF47807
GeneTree:ENSGT00640000091478 OMA:FFRISYL EMBL:CU468500
Ensembl:ENSSSCT00000009424 Uniprot:F1SCS5
Length = 914
Score = 131 (51.2 bits), Expect = 6.2e-05, P = 6.2e-05
Identities = 34/100 (34%), Positives = 53/100 (53%)
Query: 60 KAPCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLP-VQEFHLEKV 118
+A EAEA CA + G V T D DA +G+ + R+ T + K P V + + +
Sbjct: 130 QAAGEAEAMCAYLNANGCVDGCLTNDGDAFLYGAQTVYRNFTMNT--KDPHVDCYTMSSI 187
Query: 119 LEGMELSHEEFIDLCILLGCDYCDS-IRGIGPKRAIELIK 157
+ L + + L ILLGCDY + G+G ++A++LIK
Sbjct: 188 KNILGLDRDSLVGLAILLGCDYLPKGVPGVGKEQALKLIK 227
>UNIPROTKB|E1C3E4 [details] [associations]
symbol:Gga.42587 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0004518 "nuclease activity" evidence=IEA]
[GO:0006281 "DNA repair" evidence=IEA] InterPro:IPR006084
InterPro:IPR006085 InterPro:IPR006086 Pfam:PF00752 Pfam:PF00867
PRINTS:PR00853 SMART:SM00484 SMART:SM00485 GO:GO:0006281
GO:GO:0090305 GO:GO:0004518 PANTHER:PTHR11081
GeneTree:ENSGT00640000091478 EMBL:AADN02018598 IPI:IPI00818388
Ensembl:ENSGALT00000036876 OMA:HVESYCM Uniprot:E1C3E4
Length = 246
Score = 121 (47.7 bits), Expect = 8.2e-05, P = 8.2e-05
Identities = 35/107 (32%), Positives = 54/107 (50%)
Query: 60 KAPCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRH--MTFSEARKLP--VQEFHL 115
+A EAEA CA + G V T D D +G+ + R+ M ++K ++E HL
Sbjct: 140 QAAGEAEAMCAYLNAKGHVDGCITNDGDVFLYGAQTVYRNFAMNSKSSQKCTWKLKEPHL 199
Query: 116 E-----KVLEGMELSHEEFIDLCILLGCDYCDS-IRGIGPKRAIELI 156
+ + E + E I L +LLGCDY I G+G ++A++LI
Sbjct: 200 DCYTMSSIKEKLGCDRESLIGLAVLLGCDYLPKGIPGVGKEQALKLI 246
>UNIPROTKB|Q9HD60 [details] [associations]
symbol:ERCC5 "DNA repair protein-complementing XP-G cells"
species:9606 "Homo sapiens" [GO:0003697 "single-stranded DNA
binding" evidence=IEA] [GO:0004519 "endonuclease activity"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0006289
"nucleotide-excision repair" evidence=IEA] InterPro:IPR001044
InterPro:IPR006084 InterPro:IPR006085 InterPro:IPR019974
Pfam:PF00752 PRINTS:PR00066 PRINTS:PR00853 PROSITE:PS00841
SMART:SM00485 GO:GO:0005634 GO:GO:0003697 GO:GO:0090305
GO:GO:0004519 GO:GO:0006289 EMBL:AL157769 PANTHER:PTHR11081
EMBL:AF255431 EMBL:AF255433 EMBL:AF255434 EMBL:AF255435
EMBL:AF255436 UniGene:Hs.258429 HGNC:HGNC:3437
PANTHER:PTHR11081:SF1 IPI:IPI01010865 SMR:Q9HD60 STRING:Q9HD60
Ensembl:ENST00000535557 HOVERGEN:HBG054810 Uniprot:Q9HD60
Length = 232
Score = 119 (46.9 bits), Expect = 0.00012, P = 0.00012
Identities = 34/99 (34%), Positives = 55/99 (55%)
Query: 309 VAPSSIRESRKICIDASMSLYQFLIAVRSE-GNQLMSVDGEPTSHLMGTFYRTIRLVEHG 367
V+P ++ E + + +D S+ L Q L VR GN S++ P HL+ F+R +L+
Sbjct: 17 VSPEAL-EGKILAVDISIWLNQALKGVRDRHGN---SIEN-P--HLLTLFHRLCKLLFFR 69
Query: 368 LKPIYVFDGKPPTLKSGELNKRMEKREDAQKALAKAQEQ 406
++PI+VFDG P LK L KR ++++ A K E+
Sbjct: 70 IRPIFVFDGDAPLLKKQTLVKRRQRKDLASSDSRKTTEK 108
>UNIPROTKB|Q17RS7 [details] [associations]
symbol:GEN1 "Flap endonuclease GEN homolog 1" species:9606
"Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA] [GO:0004519
"endonuclease activity" evidence=IEA] [GO:0006281 "DNA repair"
evidence=IEA] [GO:0046872 "metal ion binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] InterPro:IPR006084
InterPro:IPR006085 InterPro:IPR006086 InterPro:IPR008918
InterPro:IPR020045 Pfam:PF00752 Pfam:PF00867 PRINTS:PR00853
PROSITE:PS00841 PROSITE:PS00842 SMART:SM00279 SMART:SM00484
SMART:SM00485 GO:GO:0005634 GO:GO:0046872 GO:GO:0003677
GO:GO:0006281 GO:GO:0090305 GO:GO:0004519 eggNOG:COG0258
PANTHER:PTHR11081 SUPFAM:SSF47807 KO:K15338 EMBL:AK131387
EMBL:AC093731 EMBL:BC117204 EMBL:BC117206 IPI:IPI00295818
RefSeq:NP_001123481.1 RefSeq:NP_872431.3 UniGene:Hs.467793
ProteinModelPortal:Q17RS7 SMR:Q17RS7 STRING:Q17RS7
PhosphoSite:Q17RS7 DMDM:290457644 PRIDE:Q17RS7 DNASU:348654
Ensembl:ENST00000317402 Ensembl:ENST00000381254 GeneID:348654
KEGG:hsa:348654 UCSC:uc002rct.2 CTD:348654 GeneCards:GC02P017935
H-InvDB:HIX0001847 HGNC:HGNC:26881 MIM:612449 neXtProt:NX_Q17RS7
PharmGKB:PA162389359 HOGENOM:HOG000060137 HOVERGEN:HBG096402
InParanoid:Q17RS7 OMA:FFRISYL OrthoDB:EOG4T1HKR PhylomeDB:Q17RS7
GenomeRNAi:348654 NextBio:99407 ArrayExpress:Q17RS7 Bgee:Q17RS7
CleanEx:HS_GEN1 Genevestigator:Q17RS7 Uniprot:Q17RS7
Length = 908
Score = 128 (50.1 bits), Expect = 0.00013, P = 0.00013
Identities = 32/100 (32%), Positives = 52/100 (52%)
Query: 60 KAPCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLP-VQEFHLEKV 118
+A EAEA CA + G V T D D +G+ + R+ T + K P V + + +
Sbjct: 130 QAAGEAEAMCAYLNAGGHVDGCLTNDGDTFLYGAQTVYRNFTMNT--KDPHVDCYTMSSI 187
Query: 119 LEGMELSHEEFIDLCILLGCDYCDS-IRGIGPKRAIELIK 157
+ L + + L ILLGCDY + G+G ++A++LI+
Sbjct: 188 KSKLGLDRDALVGLAILLGCDYLPKGVPGVGKEQALKLIQ 227
>UNIPROTKB|E2QU72 [details] [associations]
symbol:GEN1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0006281 "DNA repair" evidence=IEA]
[GO:0004518 "nuclease activity" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] InterPro:IPR006084 InterPro:IPR006085
InterPro:IPR006086 InterPro:IPR008918 InterPro:IPR020045
Pfam:PF00752 Pfam:PF00867 PRINTS:PR00853 SMART:SM00279
SMART:SM00484 SMART:SM00485 GO:GO:0003677 GO:GO:0006281
GO:GO:0090305 GO:GO:0004518 PANTHER:PTHR11081 SUPFAM:SSF47807
GeneTree:ENSGT00640000091478 KO:K15338 CTD:348654 OMA:FFRISYL
EMBL:AAEX03010748 RefSeq:XP_540093.2 Ensembl:ENSCAFT00000006025
GeneID:482980 KEGG:cfa:482980 NextBio:20857444 Uniprot:E2QU72
Length = 908
Score = 130 (50.8 bits), Expect = 0.00036, Sum P(2) = 0.00036
Identities = 33/100 (33%), Positives = 53/100 (53%)
Query: 60 KAPCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLP-VQEFHLEKV 118
+A EAEA CA + +G V T D DA +G+ + R+ T + K P V + +
Sbjct: 130 QAAGEAEAMCAYLNASGHVDGCLTNDGDAFLYGAQTVYRNFTMNT--KDPHVDCYTASSI 187
Query: 119 LEGMELSHEEFIDLCILLGCDYCDS-IRGIGPKRAIELIK 157
+ L + + L ILLGCDY + G+G ++A++LI+
Sbjct: 188 KSKLGLDRDALVGLAILLGCDYLPKGVPGVGKEQALKLIQ 227
Score = 40 (19.1 bits), Expect = 0.00036, Sum P(2) = 0.00036
Identities = 12/47 (25%), Positives = 19/47 (40%)
Query: 397 QKALAKAQEQGKLKWSDPDEDGLVKY----LCGDKNFAEDRIRNGAK 439
Q L + + + SDP + K +C +D +RNG K
Sbjct: 232 QSLLQRFTQWSEESCSDPQPLAIKKLAHCSVCSHPGSPKDHVRNGCK 278
>WB|WBGene00009731 [details] [associations]
symbol:exo-1 species:6239 "Caenorhabditis elegans"
[GO:0004518 "nuclease activity" evidence=IEA] [GO:0006281 "DNA
repair" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003824 "catalytic activity" evidence=IEA] InterPro:IPR006084
InterPro:IPR006085 InterPro:IPR006086 InterPro:IPR008918
InterPro:IPR020045 Pfam:PF00752 Pfam:PF00867 PRINTS:PR00853
SMART:SM00279 SMART:SM00484 SMART:SM00485 GO:GO:0003677
GO:GO:0006281 GO:GO:0090305 GO:GO:0004518 EMBL:Z93382
eggNOG:COG0258 GeneTree:ENSGT00510000047676 PANTHER:PTHR11081
SUPFAM:SSF47807 KO:K10746 PIR:T22235 RefSeq:NP_499770.1
ProteinModelPortal:O62245 SMR:O62245 IntAct:O62245 MINT:MINT-117279
STRING:O62245 PaxDb:O62245 EnsemblMetazoa:F45G2.3 GeneID:176765
KEGG:cel:CELE_F45G2.3 UCSC:F45G2.3 CTD:176765 WormBase:F45G2.3
HOGENOM:HOG000022038 InParanoid:O62245 OMA:IHMGEET NextBio:893914
Uniprot:O62245
Length = 639
Score = 122 (48.0 bits), Expect = 0.00037, P = 0.00037
Identities = 45/154 (29%), Positives = 78/154 (50%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVLE 120
AP EA+AQ A +V+ V A TED D + FG ++ + ++ +L+
Sbjct: 148 APYEADAQLAYLVQEKLVDAVITEDSDLIVFGCEMIYFKWQSATGECSVYEKCNLKNCFT 207
Query: 121 GMELSHE--EFID---LCILLGCDYCDS-IRGIGPKRAIEL-----IKEHRSI-EKI--- 165
G EL + +F+ +CIL GCDY + + G+G A + IK+ R++ K+
Sbjct: 208 G-ELGGDKFDFVKFRRICILSGCDYLQAGLPGVGLSTAAKFFSMTSIKDLRTLLRKVPSY 266
Query: 166 LENIDTKKYTVPEGWL--YKEARELFRHPEVADP 197
L+N K++ V + ++ +++A F+H V DP
Sbjct: 267 LKNPKLKEH-VNDEFIRNFEKAENTFKHQIVFDP 299
>UNIPROTKB|E1BZY2 [details] [associations]
symbol:ERCC5 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003697 "single-stranded DNA binding" evidence=IEA]
[GO:0004519 "endonuclease activity" evidence=IEA] [GO:0006289
"nucleotide-excision repair" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] InterPro:IPR001044 InterPro:IPR006084
InterPro:IPR006085 InterPro:IPR006086 InterPro:IPR008918
InterPro:IPR019974 InterPro:IPR020045 Pfam:PF00752 Pfam:PF00867
PRINTS:PR00066 PRINTS:PR00853 PROSITE:PS00841 PROSITE:PS00842
SMART:SM00279 SMART:SM00484 SMART:SM00485 GO:GO:0005634
GO:GO:0003697 GO:GO:0090305 GO:GO:0004519 GO:GO:0006289
PANTHER:PTHR11081 SUPFAM:SSF47807 PANTHER:PTHR11081:SF1
GeneTree:ENSGT00640000091542 EMBL:AADN02029216 IPI:IPI00923817
Ensembl:ENSGALT00000036537 ArrayExpress:E1BZY2 Uniprot:E1BZY2
Length = 1007
Score = 124 (48.7 bits), Expect = 0.00040, P = 0.00040
Identities = 34/110 (30%), Positives = 55/110 (50%)
Query: 60 KAPCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVL 119
+AP EAEAQCA + + T T+D D FG+ + ++ FS R V+ +
Sbjct: 802 EAPMEAEAQCAILDLTDQTSGTITDDSDVWLFGARHVYKNF-FS--RNKYVEYYQYIDFQ 858
Query: 120 EGMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEH--RSIEKILE 167
+ L + I+L LLG DY + I +G A+E++ E +E +L+
Sbjct: 859 NQLGLDRSKLINLAYLLGSDYTEGIPNVGFVTAMEILNEFPGHGLEPLLK 908
>UNIPROTKB|Q64MA3 [details] [associations]
symbol:RAD "Flap endonuclease GEN-like 1" species:39947
"Oryza sativa Japonica Group" [GO:0003690 "double-stranded DNA
binding" evidence=IDA] [GO:0003697 "single-stranded DNA binding"
evidence=IDA] [GO:0005634 "nucleus" evidence=IDA] [GO:0009555
"pollen development" evidence=IMP] [GO:0048256 "flap endonuclease
activity" evidence=IDA] InterPro:IPR006084 InterPro:IPR006085
InterPro:IPR006086 InterPro:IPR020045 Pfam:PF00752 Pfam:PF00867
PRINTS:PR00853 PROSITE:PS00841 PROSITE:PS00842 SMART:SM00484
SMART:SM00485 GO:GO:0005634 GO:GO:0009555 GO:GO:0046872
GO:GO:0006281 GO:GO:0003690 GO:GO:0003697 EMBL:CM000142
eggNOG:COG0258 PANTHER:PTHR11081 SUPFAM:SSF47807 HSSP:P39748
GO:GO:0048256 EMBL:AB158320 EMBL:AB194139 EMBL:AP006859
ProteinModelPortal:Q64MA3 EnsemblPlants:LOC_Os09g35000.1
KEGG:dosa:Os09t0521900-01 Gramene:Q64MA3 OMA:LCAQLNS Uniprot:Q64MA3
Length = 629
Score = 121 (47.7 bits), Expect = 0.00052, Sum P(2) = 0.00052
Identities = 30/112 (26%), Positives = 58/112 (51%)
Query: 60 KAPCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVL 119
+A E EA CA + G V A T D DA FG+ +++ + S ++ P + +++ +
Sbjct: 144 RAKGEGEALCAQLNNQGHVDACITSDSDAFLFGAKTVIKVLR-SNCKE-PFECYNMADIE 201
Query: 120 EGMELSHEEFIDLCILLGCDY-CDSIRGIGPKRA---IELIKEHRSIEKILE 167
G+ L ++ + + +L+G D+ + G GP+ A ++L E + K+ E
Sbjct: 202 SGLGLKRKQMVAMALLVGSDHDLHGVPGFGPETALRFVQLFDEDNVLAKLYE 253
Score = 44 (20.5 bits), Expect = 0.00052, Sum P(2) = 0.00052
Identities = 13/39 (33%), Positives = 21/39 (53%)
Query: 409 LKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARST 447
L W+ PD + LV +L +N+ IR +++L ST
Sbjct: 383 LTWNKPDMEILVDFLSFKQNWEPAYIR---QRMLPMLST 418
>DICTYBASE|DDB_G0294290 [details] [associations]
symbol:DDB_G0294290 "xeroderma pigmentosum group G
(XPG) family protein" species:44689 "Dictyostelium discoideum"
[GO:0090305 "nucleic acid phosphodiester bond hydrolysis"
evidence=IEA] [GO:0016788 "hydrolase activity, acting on ester
bonds" evidence=IEA] [GO:0006289 "nucleotide-excision repair"
evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0004519 "endonuclease activity"
evidence=IEA] [GO:0004518 "nuclease activity" evidence=IEA]
[GO:0003697 "single-stranded DNA binding" evidence=IEA]
InterPro:IPR001044 InterPro:IPR006084 InterPro:IPR006085
InterPro:IPR019974 Pfam:PF00752 PRINTS:PR00066 PRINTS:PR00853
PROSITE:PS00841 SMART:SM00485 dictyBase:DDB_G0294290 GO:GO:0005634
GO:GO:0003697 GO:GO:0090305 GO:GO:0004519 GO:GO:0006289
EMBL:AAFI02000262 RefSeq:XP_628749.1 ProteinModelPortal:Q54AQ1
EnsemblProtists:DDB0232365 GeneID:3385413 KEGG:ddi:DDB_G0294290
OMA:ENQNLIN Uniprot:Q54AQ1
Length = 977
Score = 122 (48.0 bits), Expect = 0.00064, P = 0.00064
Identities = 28/91 (30%), Positives = 53/91 (58%)
Query: 316 ESRKICIDASMSLYQFLIAVRSEGNQLMSVDGEPTSHLMGTFYRTIRLVEHGLKPIYVFD 375
E + + IDAS+ ++ F+ +++E M+ + ++G F R +L+ +KPI+VFD
Sbjct: 23 EGKTLAIDASIWIHTFIRTLKNEKGDPMT-----NAPILGFFRRICKLLSLRVKPIFVFD 77
Query: 376 GKPPTLKSGELNKRMEKREDAQKALAKAQEQ 406
G P LK + +R ++RE A++ + K Q +
Sbjct: 78 GGVPYLKRRTIEERRKRRERAEQNIEKNQRR 108
>POMBASE|SPBC29A10.05 [details] [associations]
symbol:exo1 "exonuclease I Exo1" species:4896
"Schizosaccharomyces pombe" [GO:0000706 "meiotic DNA double-strand
break processing" evidence=TAS] [GO:0000723 "telomere maintenance"
evidence=TAS] [GO:0003690 "double-stranded DNA binding"
evidence=IDA] [GO:0005634 "nucleus" evidence=ISO;IDA] [GO:0005819
"spindle" evidence=IDA] [GO:0006298 "mismatch repair"
evidence=IGI;IMP] [GO:0006312 "mitotic recombination" evidence=TAS]
[GO:0008409 "5'-3' exonuclease activity" evidence=IMP] [GO:0017108
"5'-flap endonuclease activity" evidence=ISO] [GO:0043570
"maintenance of DNA repeat elements" evidence=IMP] [GO:0046872
"metal ion binding" evidence=IEA] InterPro:IPR006084
InterPro:IPR006085 InterPro:IPR006086 InterPro:IPR008918
InterPro:IPR019974 InterPro:IPR020045 Pfam:PF00752 Pfam:PF00867
PRINTS:PR00853 PROSITE:PS00841 PROSITE:PS00842 SMART:SM00279
SMART:SM00484 SMART:SM00485 PomBase:SPBC29A10.05 GO:GO:0005634
GO:GO:0005819 GO:GO:0046872 EMBL:CU329671 GenomeReviews:CU329671_GR
GO:GO:0006298 GO:GO:0003690 GO:GO:0006312 GO:GO:0000723
GO:GO:0000706 GO:GO:0043570 GO:GO:0017108 GO:GO:0008409
eggNOG:COG0258 OrthoDB:EOG44QX8J PANTHER:PTHR11081 SUPFAM:SSF47807
KO:K10746 EMBL:L35174 PIR:T43288 RefSeq:NP_596050.1
ProteinModelPortal:P53695 STRING:P53695 EnsemblFungi:SPBC29A10.05.1
GeneID:2540348 KEGG:spo:SPBC29A10.05 NextBio:20801476
Uniprot:P53695
Length = 571
Score = 119 (46.9 bits), Expect = 0.00068, P = 0.00068
Identities = 42/150 (28%), Positives = 67/150 (44%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMT-FSEARKLPVQEFHLEKVL 119
AP EA+AQ + K + TED D L FG+ +L M F + + + L
Sbjct: 147 APYEADAQLVYLEKENIIDGIITEDSDMLVFGAQTVLFKMDGFGNCITIRRNDIANAQDL 206
Query: 120 EGMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILE--NIDTKKYTVP 177
+ L E+ + I GCDY D + G+G K A+ ++++ + +D K VP
Sbjct: 207 N-LRLPIEKLRHMAIFSGCDYTDGVAGMGLKTALRYLQKYPEPRAAIRAMRLD-KSLKVP 264
Query: 178 EGWLYKEA-REL-FRHPEVADPETIEFIDL 205
+ + A +L FRH V P+ + L
Sbjct: 265 VSFEKEFALADLAFRHQRVYCPKDKTLVHL 294
>TAIR|locus:2099463 [details] [associations]
symbol:AT3G48900 species:3702 "Arabidopsis thaliana"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003824 "catalytic
activity" evidence=IEA] [GO:0004518 "nuclease activity"
evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM;IEA]
[GO:0006281 "DNA repair" evidence=IEA;ISS] InterPro:IPR000953
InterPro:IPR006084 InterPro:IPR006085 InterPro:IPR006086
InterPro:IPR020045 Pfam:PF00752 Pfam:PF00867 PRINTS:PR00853
PROSITE:PS00841 PROSITE:PS00842 SMART:SM00298 SMART:SM00484
SMART:SM00485 GO:GO:0005634 EMBL:CP002686 GenomeReviews:BA000014_GR
GO:GO:0046872 GO:GO:0003677 EMBL:AL132967 GO:GO:0006281
GO:GO:0090305 GO:GO:0004519 InterPro:IPR016197 SUPFAM:SSF54160
EMBL:AL132963 eggNOG:COG0258 PANTHER:PTHR11081 SUPFAM:SSF47807
HSSP:P39748 EMBL:AY075628 IPI:IPI00533647 IPI:IPI00537877
PIR:T46139 PIR:T49286 RefSeq:NP_001118795.1 RefSeq:NP_190459.2
UniGene:At.50684 ProteinModelPortal:Q9M2Z3 SMR:Q9M2Z3 PRIDE:Q9M2Z3
EnsemblPlants:AT3G48900.2 GeneID:824051 KEGG:ath:AT3G48900
TAIR:At3g48900 HOGENOM:HOG000064651 InParanoid:Q9SMT0 KO:K15338
OMA:SLCDGCF PhylomeDB:Q9M2Z3 ProtClustDB:CLSN2697057
Genevestigator:Q9M2Z3 Uniprot:Q9M2Z3
Length = 600
Score = 119 (46.9 bits), Expect = 0.00073, P = 0.00073
Identities = 35/117 (29%), Positives = 56/117 (47%)
Query: 64 EAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVLEGME 123
EAEAQCA + A + D D FG+ + R + E + E ++ + + +
Sbjct: 142 EAEAQCALLNSESLCDACFSFDSDIFLFGAKTVYREICLGEGGYVVCYE--MDDIKKKLG 199
Query: 124 LSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSI--EKILENIDTKKYTVPE 178
L I L +LLG DY +RG+ ++A EL+ RSI ILE + ++ + E
Sbjct: 200 LGRNSLIALALLLGSDYSQGVRGLRQEKACELV---RSIGDNVILEKVASEGLSFAE 253
>GENEDB_PFALCIPARUM|PF07_0105 [details] [associations]
symbol:PF07_0105 "exonuclease i, putative"
species:5833 "Plasmodium falciparum" [GO:0005634 "nucleus"
evidence=ISS] [GO:0008409 "5'-3' exonuclease activity"
evidence=ISS] [GO:0006310 "DNA recombination" evidence=ISS]
[GO:0006298 "mismatch repair" evidence=ISS] InterPro:IPR006084
InterPro:IPR006085 InterPro:IPR006086 InterPro:IPR020045
Pfam:PF00752 Pfam:PF00867 PRINTS:PR00853 SMART:SM00484
SMART:SM00485 GO:GO:0005634 GO:GO:0003677 GO:GO:0006281
GO:GO:0004527 GO:GO:0090305 EMBL:AL844506 PANTHER:PTHR11081
SUPFAM:SSF47807 KO:K10746 RefSeq:XP_001349153.1
ProteinModelPortal:Q8IBK1 IntAct:Q8IBK1 MINT:MINT-1547666
EnsemblProtists:PF07_0105:mRNA GeneID:2655158 KEGG:pfa:PF07_0105
EuPathDB:PlasmoDB:PF3D7_0725000 Uniprot:Q8IBK1
Length = 1347
Score = 122 (48.0 bits), Expect = 0.00093, P = 0.00093
Identities = 57/244 (23%), Positives = 103/244 (42%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFGS-NILLRHMTFSEARKL---PVQEFH-- 114
+P EA+AQ + + + G + +ED D L +G +L + E ++ P+ +
Sbjct: 151 SPYEADAQLSYLCRMGFISCAISEDSDLLVYGCPRVLYKLKNTGECNEISLMPINDLIDW 210
Query: 115 --LEKVLEGMELSHEEFIDLCI--LLGCDYCDSIRGIGPKRAIELIKEHRSIEKILE--N 168
+ K+ + S+ EF I L D DS + + ++E I ++ E N
Sbjct: 211 NVINKIKNPLSNSYNEFYITPIKKLQNSDDYDSDISLDEETSVECINNDSYVQNNNEFIN 270
Query: 169 ID--TKKYTVPEGWLYKEARELFRHPEVADPETIEFIDLCILLGCDYCDSIRGIGPKRAI 226
I TK K+ ++ ++ + + + C + Y P+
Sbjct: 271 ISKKTKSIVNSNNNNKKKKKKKNKNKKKTNKKKNMQKSKCDNIIKQYIQQFDW--PEELF 328
Query: 227 ELLY----SFIDLCILLGCDYCDS--IRGIGPKRAIELIKEHRSIEKILENI---DTKKY 277
+L Y F+ +C+L GCDY + I G+G K A LI +H++IE I + D +
Sbjct: 329 KLQYFNIDMFLTMCVLSGCDYSNDFHITGMGIKTAYNLIFQHKNIENIFHFLISNDRWRN 388
Query: 278 TVPE 281
+PE
Sbjct: 389 KIPE 392
>UNIPROTKB|Q8IBK1 [details] [associations]
symbol:PF07_0105 "Exonuclease I, putative" species:36329
"Plasmodium falciparum 3D7" [GO:0005634 "nucleus" evidence=ISS]
InterPro:IPR006084 InterPro:IPR006085 InterPro:IPR006086
InterPro:IPR020045 Pfam:PF00752 Pfam:PF00867 PRINTS:PR00853
SMART:SM00484 SMART:SM00485 GO:GO:0005634 GO:GO:0003677
GO:GO:0006281 GO:GO:0004527 GO:GO:0090305 EMBL:AL844506
PANTHER:PTHR11081 SUPFAM:SSF47807 KO:K10746 RefSeq:XP_001349153.1
ProteinModelPortal:Q8IBK1 IntAct:Q8IBK1 MINT:MINT-1547666
EnsemblProtists:PF07_0105:mRNA GeneID:2655158 KEGG:pfa:PF07_0105
EuPathDB:PlasmoDB:PF3D7_0725000 Uniprot:Q8IBK1
Length = 1347
Score = 122 (48.0 bits), Expect = 0.00093, P = 0.00093
Identities = 57/244 (23%), Positives = 103/244 (42%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFGS-NILLRHMTFSEARKL---PVQEFH-- 114
+P EA+AQ + + + G + +ED D L +G +L + E ++ P+ +
Sbjct: 151 SPYEADAQLSYLCRMGFISCAISEDSDLLVYGCPRVLYKLKNTGECNEISLMPINDLIDW 210
Query: 115 --LEKVLEGMELSHEEFIDLCI--LLGCDYCDSIRGIGPKRAIELIKEHRSIEKILE--N 168
+ K+ + S+ EF I L D DS + + ++E I ++ E N
Sbjct: 211 NVINKIKNPLSNSYNEFYITPIKKLQNSDDYDSDISLDEETSVECINNDSYVQNNNEFIN 270
Query: 169 ID--TKKYTVPEGWLYKEARELFRHPEVADPETIEFIDLCILLGCDYCDSIRGIGPKRAI 226
I TK K+ ++ ++ + + + C + Y P+
Sbjct: 271 ISKKTKSIVNSNNNNKKKKKKKNKNKKKTNKKKNMQKSKCDNIIKQYIQQFDW--PEELF 328
Query: 227 ELLY----SFIDLCILLGCDYCDS--IRGIGPKRAIELIKEHRSIEKILENI---DTKKY 277
+L Y F+ +C+L GCDY + I G+G K A LI +H++IE I + D +
Sbjct: 329 KLQYFNIDMFLTMCVLSGCDYSNDFHITGMGIKTAYNLIFQHKNIENIFHFLISNDRWRN 388
Query: 278 TVPE 281
+PE
Sbjct: 389 KIPE 392
>UNIPROTKB|Q29FC1 [details] [associations]
symbol:Gen "Flap endonuclease GEN" species:46245
"Drosophila pseudoobscura pseudoobscura" [GO:0000737 "DNA catabolic
process, endonucleolytic" evidence=ISS] [GO:0000738 "DNA catabolic
process, exonucleolytic" evidence=ISS] [GO:0004520
"endodeoxyribonuclease activity" evidence=ISS] [GO:0005634
"nucleus" evidence=ISS] [GO:0008310 "single-stranded DNA specific
3'-5' exodeoxyribonuclease activity" evidence=ISS] [GO:0008311
"double-stranded DNA specific 3'-5' exodeoxyribonuclease activity"
evidence=ISS] [GO:0035312 "5'-3' exodeoxyribonuclease activity"
evidence=ISS] InterPro:IPR006084 InterPro:IPR006085
InterPro:IPR006086 InterPro:IPR008918 InterPro:IPR020045
Pfam:PF00752 Pfam:PF00867 PRINTS:PR00853 PROSITE:PS00841
PROSITE:PS00842 SMART:SM00279 SMART:SM00484 SMART:SM00485
GO:GO:0005634 GO:GO:0046872 GO:GO:0003677 GO:GO:0006281
GO:GO:0004520 GO:GO:0008311 GO:GO:0000737 GO:GO:0000738
EMBL:CH379067 eggNOG:COG0258 PANTHER:PTHR11081 SUPFAM:SSF47807
GO:GO:0008310 KO:K15338 OMA:FFRTCYL OrthoDB:EOG4QFTV7 GO:GO:0035312
RefSeq:XP_001354281.1 ProteinModelPortal:Q29FC1 GeneID:4814122
KEGG:dpo:Dpse_GA10481 FlyBase:FBgn0070538 InParanoid:Q29FC1
Uniprot:Q29FC1
Length = 754
Score = 127 (49.8 bits), Expect = 0.00096, Sum P(2) = 0.00096
Identities = 37/129 (28%), Positives = 61/129 (47%)
Query: 60 KAPCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSE-----ARKLPVQEFH 114
+ P EAEA A + K G V ++D D +G+ + R+ + S A V +
Sbjct: 138 QGPGEAEAYAAFLNKHGLVDGVISQDSDCFAYGAIRVYRNFSVSTQGAQAAAGGAVDIYD 197
Query: 115 LEKVLEGMELSHEEFIDLCILLGCDYC-DSIRGIGPKRAIELIKEHRSIEKI--LEN--I 169
+ ++ M+ + I + +L GCDYC D I GIG ++L +++ E + L N
Sbjct: 198 MREITSRMDFGQHKIIVMALLCGCDYCPDGIGGIGKDGVLKLFNKYKESEILDRLRNWRA 257
Query: 170 DTKKYTVPE 178
+T KY E
Sbjct: 258 ETDKYNALE 266
Score = 37 (18.1 bits), Expect = 0.00096, Sum P(2) = 0.00096
Identities = 11/41 (26%), Positives = 16/41 (39%)
Query: 370 PIYVFDGKPPTLKSGELNKRMEKREDAQKALAKAQEQGKLK 410
P+ + P TL + N KR +K Q Q L+
Sbjct: 494 PLSAIENIPETLDKQKANPAKPKRVVKKKKAPTEQAQPSLQ 534
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.320 0.138 0.406 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 531 468 0.00098 118 3 11 22 0.39 34
35 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 86
No. of states in DFA: 604 (64 KB)
Total size of DFA: 267 KB (2138 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:01
No. of threads or processors used: 24
Search cpu time: 42.46u 0.10s 42.56t Elapsed: 00:00:27
Total cpu time: 42.48u 0.10s 42.58t Elapsed: 00:00:29
Start: Thu Aug 15 13:33:15 2013 End: Thu Aug 15 13:33:44 2013