RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy1206
(531 letters)
>3q8k_A Flap endonuclease 1; helix-3 turn-helix, hydrophobic wedge, 3' flap
binding site, hydrolase-DNA complex, DNA repair,
replication; HET: DNA; 2.20A {Homo sapiens} PDB: 3q8l_A*
3q8m_A*
Length = 341
Score = 208 bits (530), Expect = 8e-63
Identities = 94/142 (66%), Positives = 120/142 (84%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVLE 120
AP EAEA CAA+VKAGKVYA ATEDMD LTFGS +L+RH+T SEA+KLP+QEFHL ++L+
Sbjct: 154 APSEAEASCAALVKAGKVYAAATEDMDCLTFGSPVLMRHLTASEAKKLPIQEFHLSRILQ 213
Query: 121 GMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGW 180
+ L+ E+F+DLCILLG DYC+SIRGIGPKRA++LI++H+SIE+I+ +D KY VPE W
Sbjct: 214 ELGLNQEQFVDLCILLGSDYCESIRGIGPKRAVDLIQKHKSIEEIVRRLDPNKYPVPENW 273
Query: 181 LYKEARELFRHPEVADPETIEF 202
L+KEA +LF PEV DPE++E
Sbjct: 274 LHKEAHQLFLEPEVLDPESVEL 295
Score = 117 bits (294), Expect = 3e-29
Identities = 70/114 (61%), Positives = 89/114 (78%), Gaps = 7/114 (6%)
Query: 304 ELVADVAPSSIRES-------RKICIDASMSLYQFLIAVRSEGNQLMSVDGEPTSHLMGT 356
+L+ADVAPS+IRE+ RK+ IDASMS+YQFLIAVR G+ L + +GE TSHLMG
Sbjct: 7 KLIADVAPSAIRENDIKSYFGRKVAIDASMSIYQFLIAVRQGGDVLQNEEGETTSHLMGM 66
Query: 357 FYRTIRLVEHGLKPIYVFDGKPPTLKSGELNKRMEKREDAQKALAKAQEQGKLK 410
FYRTIR++E+G+KP+YVFDGKPP LKSGEL KR E+R +A+K L +AQ G +
Sbjct: 67 FYRTIRMMENGIKPVYVFDGKPPQLKSGELAKRSERRAEAEKQLQQAQAAGAEQ 120
Score = 116 bits (292), Expect = 6e-29
Identities = 48/75 (64%), Positives = 63/75 (84%)
Query: 232 FIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGWLYKEAREL 291
F+DLCILLG DYC+SIRGIGPKRA++LI++H+SIE+I+ +D KY VPE WL+KEA +L
Sbjct: 222 FVDLCILLGSDYCESIRGIGPKRAVDLIQKHKSIEEIVRRLDPNKYPVPENWLHKEAHQL 281
Query: 292 FRHPEIADPETIELV 306
F PE+ DPE++EL
Sbjct: 282 FLEPEVLDPESVELK 296
Score = 70.6 bits (173), Expect = 2e-13
Identities = 24/53 (45%), Positives = 38/53 (71%), Gaps = 3/53 (5%)
Query: 405 EQGKLKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSTTTQGRLDSFF 457
E +LKWS+P+E+ L+K++CG+K F+E+RIR+G K+L K+R L+ F
Sbjct: 291 ESVELKWSEPNEEELIKFMCGEKQFSEERIRSGVKRLSKSR---QGSTLEVLF 340
Score = 69.5 bits (170), Expect = 5e-13
Identities = 23/49 (46%), Positives = 36/49 (73%), Gaps = 3/49 (6%)
Query: 3 LKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSSTTQGRLDSFF 51
LKWS+P+E+ L+K++CG+K F+E+RIR+G K+L K+R L+ F
Sbjct: 295 LKWSEPNEEELIKFMCGEKQFSEERIRSGVKRLSKSR---QGSTLEVLF 340
>1ul1_X Flap endonuclease-1; protein complex, DNA-binding protein, flap
DNA, flap endonuclease, sliding clamp, DNA clamp; 2.90A
{Homo sapiens} SCOP: a.60.7.1 c.120.1.2
Length = 379
Score = 208 bits (531), Expect = 2e-62
Identities = 94/142 (66%), Positives = 120/142 (84%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVLE 120
AP EAEA CAA+VKAGKVYA ATEDMD LTFGS +L+RH+T SEA+KLP+QEFHL ++L+
Sbjct: 154 APSEAEASCAALVKAGKVYAAATEDMDCLTFGSPVLMRHLTASEAKKLPIQEFHLSRILQ 213
Query: 121 GMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGW 180
+ L+ E+F+DLCILLG DYC+SIRGIGPKRA++LI++H+SIE+I+ +D KY VPE W
Sbjct: 214 ELGLNQEQFVDLCILLGSDYCESIRGIGPKRAVDLIQKHKSIEEIVRRLDPNKYPVPENW 273
Query: 181 LYKEARELFRHPEVADPETIEF 202
L+KEA +LF PEV DPE++E
Sbjct: 274 LHKEAHQLFLEPEVLDPESVEL 295
Score = 117 bits (294), Expect = 5e-29
Identities = 48/75 (64%), Positives = 63/75 (84%)
Query: 232 FIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGWLYKEAREL 291
F+DLCILLG DYC+SIRGIGPKRA++LI++H+SIE+I+ +D KY VPE WL+KEA +L
Sbjct: 222 FVDLCILLGSDYCESIRGIGPKRAVDLIQKHKSIEEIVRRLDPNKYPVPENWLHKEAHQL 281
Query: 292 FRHPEIADPETIELV 306
F PE+ DPE++EL
Sbjct: 282 FLEPEVLDPESVELK 296
Score = 115 bits (290), Expect = 2e-28
Identities = 70/113 (61%), Positives = 88/113 (77%), Gaps = 7/113 (6%)
Query: 305 LVADVAPSSIRES-------RKICIDASMSLYQFLIAVRSEGNQLMSVDGEPTSHLMGTF 357
L+ADVAPS+IRE+ RK+ IDASMS+YQFLIAVR G+ L + +GE TSHLMG F
Sbjct: 8 LIADVAPSAIRENDIKSYFGRKVAIDASMSIYQFLIAVRQGGDVLQNEEGETTSHLMGMF 67
Query: 358 YRTIRLVEHGLKPIYVFDGKPPTLKSGELNKRMEKREDAQKALAKAQEQGKLK 410
YRTIR++E+G+KP+YVFDGKPP LKSGEL KR E+R +A+K L +AQ G +
Sbjct: 68 YRTIRMMENGIKPVYVFDGKPPQLKSGELAKRSERRAEAEKQLQQAQAAGAEQ 120
Score = 79.2 bits (195), Expect = 4e-16
Identities = 31/64 (48%), Positives = 46/64 (71%)
Query: 405 EQGKLKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSTTTQGRLDSFFTIRREEK 464
E +LKWS+P+E+ L+K++CG+K F+E+RIR+G K+L K+R +TQGRLD FF +
Sbjct: 291 ESVELKWSEPNEEELIKFMCGEKQFSEERIRSGVKRLSKSRQGSTQGRLDDFFKVTGSLS 350
Query: 465 RKSR 468
R
Sbjct: 351 SAKR 354
Score = 78.0 bits (192), Expect = 9e-16
Identities = 33/73 (45%), Positives = 49/73 (67%)
Query: 3 LKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSSTTQGRLDSFFTIRREEKRKAP 62
LKWS+P+E+ L+K++CG+K F+E+RIR+G K+L K+R +TQGRLD FF +
Sbjct: 295 LKWSEPNEEELIKFMCGEKQFSEERIRSGVKRLSKSRQGSTQGRLDDFFKVTGSLSSAKR 354
Query: 63 CEAEAQCAAMVKA 75
E E + + KA
Sbjct: 355 KEPEPKGSTKKKA 367
>1rxw_A Flap structure-specific endonuclease; helical clamp, helix-3
turn-helix, hydrophobic wedge, 3' FLA site,
hydrolase-DNA complex; 2.00A {Archaeoglobus fulgidus}
SCOP: a.60.7.1 c.120.1.2 PDB: 1rxv_A
Length = 336
Score = 184 bits (468), Expect = 7e-54
Identities = 52/151 (34%), Positives = 77/151 (50%), Gaps = 15/151 (9%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQE-------- 112
AP E EAQ A M G V T ++D D+L FGS L R++ + RKLP +
Sbjct: 148 APSEGEAQAAYMAAKGDVEYTGSQDYDSLLFGSPRLARNLAITGKRKLPGKNVYVDVKPE 207
Query: 113 -FHLEKVLEGMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDT 171
LE L+ + L+ E+ ID+ IL+G DY + ++G+G K+A+ IK + I + L+ +
Sbjct: 208 IIILESNLKRLGLTREQLIDIAILVGTDYNEGVKGVGVKKALNYIKTYGDIFRALKALKV 267
Query: 172 KKYTVPEGWLYKEARELFRHPEVADPETIEF 202
+E R F +P V D IEF
Sbjct: 268 NIDH------VEEIRNFFLNPPVTDDYRIEF 292
Score = 107 bits (269), Expect = 6e-26
Identities = 36/92 (39%), Positives = 55/92 (59%), Gaps = 1/92 (1%)
Query: 318 RKICIDASMSLYQFLIAVRSE-GNQLMSVDGEPTSHLMGTFYRTIRLVEHGLKPIYVFDG 376
+KI +DA +LYQF+ +R G L G TSHL G YR +VE G++P++VFDG
Sbjct: 22 KKIAVDAFNTLYQFISIIRQPDGTPLKDSQGRITSHLSGILYRVSNMVEVGIRPVFVFDG 81
Query: 377 KPPTLKSGELNKRMEKREDAQKALAKAQEQGK 408
+PP K E+ +R ++R +A++ A + G
Sbjct: 82 EPPEFKKAEIEERKKRRAEAEEMWIAALQAGD 113
Score = 98.4 bits (245), Expect = 9e-23
Identities = 22/74 (29%), Positives = 37/74 (50%), Gaps = 6/74 (8%)
Query: 232 FIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGWLYKEAREL 291
ID+ IL+G DY + ++G+G K+A+ IK + I + L+ + +E R
Sbjct: 225 LIDIAILVGTDYNEGVKGVGVKKALNYIKTYGDIFRALKALKVNIDH------VEEIRNF 278
Query: 292 FRHPEIADPETIEL 305
F +P + D IE
Sbjct: 279 FLNPPVTDDYRIEF 292
Score = 69.1 bits (169), Expect = 6e-13
Identities = 13/50 (26%), Positives = 31/50 (62%), Gaps = 2/50 (4%)
Query: 408 KLKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSTTTQGRLDSFF 457
++++ +PD + +++LC + +F+ +R+ +KL +S TQ L+ +F
Sbjct: 289 RIEFREPDFEKAIEFLCEEHDFSRERVEKALEKLKALKS--TQATLERWF 336
Score = 68.3 bits (167), Expect = 1e-12
Identities = 13/49 (26%), Positives = 30/49 (61%), Gaps = 2/49 (4%)
Query: 3 LKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSSTTQGRLDSFF 51
+++ +PD + +++LC + +F+ +R+ +KL +S TQ L+ +F
Sbjct: 290 IEFREPDFEKAIEFLCEEHDFSRERVEKALEKLKALKS--TQATLERWF 336
>3ory_A Flap endonuclease 1; hydrolase; 2.00A {Desulfurococcus
amylolyticus}
Length = 363
Score = 180 bits (457), Expect = 6e-52
Identities = 60/152 (39%), Positives = 85/152 (55%), Gaps = 14/152 (9%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQE-------- 112
AP E EAQ A +VK G YA+A++D D+L FGS L+R++T S RKLP +
Sbjct: 163 APAEGEAQAAYIVKKGDAYASASQDYDSLLFGSPKLVRNLTISGRRKLPRKNEYVEVKPE 222
Query: 113 -FHLEKVLEGMELSHEEFIDLCILLGCDYC-DSIRGIGPKRAIELIKEHRSIEKILENID 170
L+K+L + ++ E ID+ ILLG DY D GIGPK+A++L+K + IEKI + I
Sbjct: 223 LIELDKLLVQLGITLENLIDIGILLGTDYNPDGFEGIGPKKALQLVKAYGGIEKIPKPIL 282
Query: 171 TKKYTVPEGWLYKEARELFRHPEVADPETIEF 202
V ++ F P+V D IE+
Sbjct: 283 KSPIEVD----VIAIKKYFLQPQVTDNYRIEW 310
Score = 112 bits (281), Expect = 2e-27
Identities = 49/113 (43%), Positives = 69/113 (61%), Gaps = 6/113 (5%)
Query: 304 ELVADVAPSSIRE-----SRKICIDASMSLYQFLIAVRSE-GNQLMSVDGEPTSHLMGTF 357
+++ A + I + + I ID +LYQFL A+R G LM +G TSHL G F
Sbjct: 17 DIIPGEAKTVIEDLRILHGKIIVIDGYNALYQFLAAIRQPDGTPLMDNNGRITSHLSGLF 76
Query: 358 YRTIRLVEHGLKPIYVFDGKPPTLKSGELNKRMEKREDAQKALAKAQEQGKLK 410
YRTI +VE G+KP+YVFDGKPP LK+ E+ +R +E+A K +A + G L+
Sbjct: 77 YRTINIVEAGIKPVYVFDGKPPELKAREIERRKAVKEEAAKKYEEAVQSGDLE 129
Score = 96.5 bits (240), Expect = 5e-22
Identities = 28/74 (37%), Positives = 39/74 (52%), Gaps = 5/74 (6%)
Query: 232 FIDLCILLGCDYC-DSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGWLYKEARE 290
ID+ ILLG DY D GIGPK+A++L+K + IEKI + I V ++
Sbjct: 240 LIDIGILLGTDYNPDGFEGIGPKKALQLVKAYGGIEKIPKPILKSPIEVD----VIAIKK 295
Query: 291 LFRHPEIADPETIE 304
F P++ D IE
Sbjct: 296 YFLQPQVTDNYRIE 309
Score = 67.2 bits (164), Expect = 2e-12
Identities = 13/54 (24%), Positives = 28/54 (51%), Gaps = 3/54 (5%)
Query: 408 KLKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSTTTQGR---LDSFFT 458
+++W PD D + + L + +F+ DR+ ++ +KA +G L +F+
Sbjct: 307 RIEWHTPDPDAVKRILVDEHDFSIDRVSTALERYVKAFKENIRGEQKGLSKWFS 360
Score = 66.4 bits (162), Expect = 5e-12
Identities = 13/53 (24%), Positives = 27/53 (50%), Gaps = 3/53 (5%)
Query: 3 LKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSSTTQGR---LDSFFT 52
++W PD D + + L + +F+ DR+ ++ +KA +G L +F+
Sbjct: 308 IEWHTPDPDAVKRILVDEHDFSIDRVSTALERYVKAFKENIRGEQKGLSKWFS 360
>1a76_A Flap endonuclease-1 protein; 5'-3' EXO/endo nuclease, DNA
replication, RTH, RAD27, DNA repair; 2.00A
{Methanocaldococcus jannaschii} SCOP: a.60.7.1 c.120.1.2
PDB: 1a77_A
Length = 326
Score = 173 bits (439), Expect = 9e-50
Identities = 43/143 (30%), Positives = 78/143 (54%), Gaps = 14/143 (9%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVLE 120
AP E EAQ + M K G V+A ++D DAL +G+ ++R++T ++ + L +VLE
Sbjct: 149 APSEGEAQASYMAKKGDVWAVVSQDYDALLYGAPRVVRNLTTTKE---MPELIELNEVLE 205
Query: 121 GMELSHEEFIDLCILLGCDYC-DSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEG 179
+ +S ++ ID+ I +G DY ++GIG KRA EL++ + + + + +
Sbjct: 206 DLRISLDDLIDIAIFMGTDYNPGGVKGIGFKRAYELVRSGVAKDVLKKEV---------- 255
Query: 180 WLYKEARELFRHPEVADPETIEF 202
Y E + +F+ P+V D ++
Sbjct: 256 EYYDEIKRIFKEPKVTDNYSLSL 278
Score = 111 bits (280), Expect = 2e-27
Identities = 37/94 (39%), Positives = 58/94 (61%), Gaps = 1/94 (1%)
Query: 318 RKICIDASMSLYQFLIAVR-SEGNQLMSVDGEPTSHLMGTFYRTIRLVEHGLKPIYVFDG 376
+K+ ID +LYQFL ++R +G+ L + GE TS G FY+TI L+E+ + PI+VFDG
Sbjct: 22 KKVAIDGMNALYQFLTSIRLRDGSPLRNRKGEITSAYNGVFYKTIHLLENDITPIWVFDG 81
Query: 377 KPPTLKSGELNKRMEKREDAQKALAKAQEQGKLK 410
+PP LK R E +E A+ + +A ++ +
Sbjct: 82 EPPKLKEKTRKVRREMKEKAELKMKEAIKKEDFE 115
Score = 86.8 bits (215), Expect = 6e-19
Identities = 20/75 (26%), Positives = 38/75 (50%), Gaps = 11/75 (14%)
Query: 232 FIDLCILLGCDYC-DSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGWLYKEARE 290
ID+ I +G DY ++GIG KRA EL++ + + + + + Y E +
Sbjct: 214 LIDIAIFMGTDYNPGGVKGIGFKRAYELVRSGVAKDVLKKEV----------EYYDEIKR 263
Query: 291 LFRHPEIADPETIEL 305
+F+ P++ D ++ L
Sbjct: 264 IFKEPKVTDNYSLSL 278
Score = 68.3 bits (167), Expect = 1e-12
Identities = 19/75 (25%), Positives = 39/75 (52%), Gaps = 3/75 (4%)
Query: 386 LNKRMEKREDAQKALAKAQ--EQGKLKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLK 443
L K +E ++ ++ + + + L PD++G++K+L + +F DR++ KL
Sbjct: 251 LKKEVEYYDEIKRIFKEPKVTDNYSLSLKLPDKEGIIKFLVDENDFNYDRVKKHVDKLYN 310
Query: 444 ARST-TTQGRLDSFF 457
+ T Q LD++F
Sbjct: 311 LIANKTKQKTLDAWF 325
Score = 67.2 bits (164), Expect = 3e-12
Identities = 16/51 (31%), Positives = 29/51 (56%), Gaps = 1/51 (1%)
Query: 2 TLKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKA-RSSTTQGRLDSFF 51
+L PD++G++K+L + +F DR++ KL + T Q LD++F
Sbjct: 275 SLSLKLPDKEGIIKFLVDENDFNYDRVKKHVDKLYNLIANKTKQKTLDAWF 325
>2izo_A FEN1, flap structure-specific endonuclease; hydrolase, DNA repair,
DNA-binding, endonuclease, metal-BIND excision repair,
DNA replication, PCNA; HET: DNA; 2.9A {Sulfolobus
solfataricus}
Length = 346
Score = 171 bits (434), Expect = 7e-49
Identities = 56/150 (37%), Positives = 89/150 (59%), Gaps = 12/150 (8%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQE-------- 112
AP E EA+ A + K G +A A++D DA+ FG+ L+R++T + RKLP ++
Sbjct: 146 APSEGEAEAAYLNKLGLSWAAASQDYDAILFGAKRLVRNLTITGKRKLPNKDVYVEIKPE 205
Query: 113 -FHLEKVLEGMELSHEEFIDLCILLGCDYC-DSIRGIGPKRAIELIKEHRSIEKILENID 170
E +L+ + ++ E+ ID+ IL+G DY D IRGIGP+RA+++IK++ IEK +E +
Sbjct: 206 LIETEILLKKLGITREQLIDIGILIGTDYNPDGIRGIGPERALKIIKKYGKIEKAMEYGE 265
Query: 171 TKKYTVPEGWLYKEARELFRHPEVADPETI 200
K + + E R LF +P+V PE
Sbjct: 266 ISKKDIN--FNIDEIRGLFLNPQVVKPEEA 293
Score = 111 bits (280), Expect = 3e-27
Identities = 49/112 (43%), Positives = 70/112 (62%), Gaps = 8/112 (7%)
Query: 308 DVAPSSIRES-------RKICIDASMSLYQFLIAVR-SEGNQLMSVDGEPTSHLMGTFYR 359
D+ RE +++ ID +LYQFL A+R +G LM G TSHL G FYR
Sbjct: 2 DLVKDVKRELSFSELKGKRVSIDGYNALYQFLAAIRQPDGTPLMDSQGRVTSHLSGLFYR 61
Query: 360 TIRLVEHGLKPIYVFDGKPPTLKSGELNKRMEKREDAQKALAKAQEQGKLKW 411
TI ++E G+ PIYVFDGKPP KS EL +R + +E+A++ L +A+ +GK++
Sbjct: 62 TINILEEGVIPIYVFDGKPPEQKSEELERRRKAKEEAERKLERAKSEGKIEE 113
Score = 91.2 bits (226), Expect = 3e-20
Identities = 30/73 (41%), Positives = 45/73 (61%), Gaps = 3/73 (4%)
Query: 232 FIDLCILLGCDYC-DSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGWLYKEARE 290
ID+ IL+G DY D IRGIGP+RA+++IK++ IEK +E + K + + E R
Sbjct: 223 LIDIGILIGTDYNPDGIRGIGPERALKIIKKYGKIEKAMEYGEISKKDIN--FNIDEIRG 280
Query: 291 LFRHPEIADPETI 303
LF +P++ PE
Sbjct: 281 LFLNPQVVKPEEA 293
Score = 70.0 bits (171), Expect = 3e-13
Identities = 16/54 (29%), Positives = 32/54 (59%), Gaps = 4/54 (7%)
Query: 408 KLKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKA----RSTTTQGRLDSFF 457
L ++P+ + ++ L + NF+E+R++NG ++L KA + + Q LD +F
Sbjct: 293 ALDLNEPNGEDIINILVYEHNFSEERVKNGIERLTKAIKEAKGASRQTGLDRWF 346
Score = 69.2 bits (169), Expect = 6e-13
Identities = 16/53 (30%), Positives = 33/53 (62%), Gaps = 4/53 (7%)
Query: 3 LKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKA----RSSTTQGRLDSFF 51
L ++P+ + ++ L + NF+E+R++NG ++L KA + ++ Q LD +F
Sbjct: 294 LDLNEPNGEDIINILVYEHNFSEERVKNGIERLTKAIKEAKGASRQTGLDRWF 346
>1b43_A Protein (FEN-1); nuclease, DNA repair, DNA replication,
transferase; 2.00A {Pyrococcus furiosus} SCOP: a.60.7.1
c.120.1.2 PDB: 1mc8_A
Length = 340
Score = 164 bits (416), Expect = 2e-46
Identities = 51/152 (33%), Positives = 81/152 (53%), Gaps = 18/152 (11%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQE-------- 112
AP E EAQ A M G VYA+A++D D+L FG+ L+R++T + RKLP +
Sbjct: 149 APSEGEAQAAYMAAKGSVYASASQDYDSLLFGAPRLVRNLTITGKRKLPGKNVYVEIKPE 208
Query: 113 -FHLEKVLEGMELSHEEFIDLCILLGCDYC-DSIRGIGPKRAIELIKEHRSIEKILENID 170
LE+VL+ ++L+ E+ I+L IL+G DY I+GIG K+A+E+++ +
Sbjct: 209 LIILEEVLKELKLTREKLIELAILVGTDYNPGGIKGIGLKKALEIVRHSKDPL------- 261
Query: 171 TKKYTVPEGWLYKEARELFRHPEVADPETIEF 202
K+ +E F +P V D + +
Sbjct: 262 -AKFQKQSDVDLYAIKEFFLNPPVTDNYNLVW 292
Score = 110 bits (277), Expect = 5e-27
Identities = 48/94 (51%), Positives = 65/94 (69%), Gaps = 1/94 (1%)
Query: 318 RKICIDASMSLYQFLIAVRSE-GNQLMSVDGEPTSHLMGTFYRTIRLVEHGLKPIYVFDG 376
+KI IDA ++YQFL +R + G LM G TSHL G FYRTI L+E G+KP+YVFDG
Sbjct: 22 KKIAIDALNAIYQFLSTIRQKDGTPLMDSKGRITSHLSGLFYRTINLMEAGIKPVYVFDG 81
Query: 377 KPPTLKSGELNKRMEKREDAQKALAKAQEQGKLK 410
+PP K EL KR E RE+A++ +A E+G+++
Sbjct: 82 EPPEFKKKELEKRREAREEAEEKWREALEKGEIE 115
Score = 84.6 bits (209), Expect = 4e-18
Identities = 19/74 (25%), Positives = 33/74 (44%), Gaps = 9/74 (12%)
Query: 232 FIDLCILLGCDYC-DSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGWLYKEARE 290
I+L IL+G DY I+GIG K+A+E+++ + K+ +E
Sbjct: 226 LIELAILVGTDYNPGGIKGIGLKKALEIVRHSKDPL--------AKFQKQSDVDLYAIKE 277
Query: 291 LFRHPEIADPETIE 304
F +P + D +
Sbjct: 278 FFLNPPVTDNYNLV 291
Score = 73.4 bits (180), Expect = 2e-14
Identities = 22/50 (44%), Positives = 37/50 (74%)
Query: 408 KLKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSTTTQGRLDSFF 457
L W DPDE+G++K+LC + +F+E+R++NG ++L KA + Q L+S+F
Sbjct: 289 NLVWRDPDEEGILKFLCDEHDFSEERVKNGLERLKKAIKSGKQSTLESWF 338
Score = 72.6 bits (178), Expect = 4e-14
Identities = 23/50 (46%), Positives = 37/50 (74%)
Query: 2 TLKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSSTTQGRLDSFF 51
L W DPDE+G++K+LC + +F+E+R++NG ++L KA S Q L+S+F
Sbjct: 289 NLVWRDPDEEGILKFLCDEHDFSEERVKNGLERLKKAIKSGKQSTLESWF 338
>3qe9_Y Exonuclease 1; exonuclease, hydrolase-DNA complex; HET: DNA; 2.51A
{Homo sapiens} PDB: 3qeb_Z* 3qea_Z*
Length = 352
Score = 151 bits (383), Expect = 2e-41
Identities = 51/153 (33%), Positives = 78/153 (50%), Gaps = 9/153 (5%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFG-SNILLRHMTFSEARKLPVQEFHLEKVL 119
AP EA+AQ A + KAG V A TED L FG ++L+ F ++ + + L
Sbjct: 147 APYEADAQLAYLNKAGIVQAIITEDSALLAFGCKKVILKMDQFGNGLEIDQARLGMCRQL 206
Query: 120 EGMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRS--IEKILENIDT---KKY 174
G + E+F +CIL GCDY S+RGIG +A ++++ + I K+++ I
Sbjct: 207 -GDVFTEEKFRYMCILSGCDYLSSLRGIGLAKACKVLRLANNPDIVKVIKKIGHYLKMNI 265
Query: 175 TVPEGWL--YKEARELFRHPEVADPETIEFIDL 205
TVPE ++ + A F + V DP + I L
Sbjct: 266 TVPEDYINGFIRANNTFLYQLVFDPIKRKLIPL 298
Score = 95.5 bits (237), Expect = 1e-21
Identities = 25/95 (26%), Positives = 42/95 (44%), Gaps = 6/95 (6%)
Query: 318 RKICIDASMSLYQFLIAVRSEGNQLMSVDGEPTSHLMGTFYRTIR-LVEHGLKPIYVFDG 376
+ + +D L++ IA + + GEPT +G + + L+ HG+KPI VFDG
Sbjct: 25 QVVAVDTYCWLHKGAIACAEKLAK-----GEPTDRYVGFCMKFVNMLLSHGIKPILVFDG 79
Query: 377 KPPTLKSGELNKRMEKREDAQKALAKAQEQGKLKW 411
K R E+R+ + +GK+
Sbjct: 80 CTLPSKKEVERSRRERRQANLLKGKQLLREGKVSE 114
Score = 87.8 bits (217), Expect = 5e-19
Identities = 26/83 (31%), Positives = 44/83 (53%), Gaps = 7/83 (8%)
Query: 232 FIDLCILLGCDYCDSIRGIGPKRAIELIKEHRS--IEKILENIDT---KKYTVPEGWL-- 284
F +CIL GCDY S+RGIG +A ++++ + I K+++ I TVPE ++
Sbjct: 215 FRYMCILSGCDYLSSLRGIGLAKACKVLRLANNPDIVKVIKKIGHYLKMNITVPEDYING 274
Query: 285 YKEARELFRHPEIADPETIELVA 307
+ A F + + DP +L+
Sbjct: 275 FIRANNTFLYQLVFDPIKRKLIP 297
Score = 42.3 bits (99), Expect = 3e-04
Identities = 5/43 (11%), Positives = 14/43 (32%), Gaps = 1/43 (2%)
Query: 7 DPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKA-RSSTTQGRLD 48
DP + L+ + + + + + + + G D
Sbjct: 289 DPIKRKLIPLNAYEDDVDPETLSYAGQYVDDSIALQIALGNKD 331
Score = 42.3 bits (99), Expect = 3e-04
Identities = 5/43 (11%), Positives = 15/43 (34%), Gaps = 1/43 (2%)
Query: 413 DPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARST-TTQGRLD 454
DP + L+ + + + + + + + + G D
Sbjct: 289 DPIKRKLIPLNAYEDDVDPETLSYAGQYVDDSIALQIALGNKD 331
>1exn_A 5'-exonuclease, 5'-nuclease; hydrolase; 2.50A {Enterobacteria phage
T5} SCOP: a.60.7.1 c.120.1.2 PDB: 1ut5_A 1ut8_A 1xo1_A
Length = 290
Score = 50.4 bits (121), Expect = 5e-07
Identities = 21/66 (31%), Positives = 35/66 (53%), Gaps = 5/66 (7%)
Query: 112 EFHLEKVLEGMELS-HEEFIDLCILLGCDYCDSIRG---IGPKRAIELIKEHRSIEKILE 167
E+HL + E + E+FI L ++G D D+IRG IG KR +I+E ++ I++
Sbjct: 173 EYHLRDMYEHHNVDDVEQFISLKAIMG-DLGDNIRGVEGIGAKRGYNIIREFGNVLDIID 231
Query: 168 NIDTKK 173
+
Sbjct: 232 QLPLPG 237
Score = 47.3 bits (113), Expect = 5e-06
Identities = 16/48 (33%), Positives = 26/48 (54%), Gaps = 4/48 (8%)
Query: 232 FIDLCILLGCDYCDSIRG---IGPKRAIELIKEHRSIEKILENIDTKK 276
FI L ++G D D+IRG IG KR +I+E ++ I++ +
Sbjct: 191 FISLKAIMG-DLGDNIRGVEGIGAKRGYNIIREFGNVLDIIDQLPLPG 237
Score = 36.9 bits (86), Expect = 0.011
Identities = 25/120 (20%), Positives = 48/120 (40%), Gaps = 17/120 (14%)
Query: 167 ENIDTKKYTVPEGWLYKEARELFRHPEVADPETIEFIDLCILLGCDYCDSIRG---IGPK 223
+ + +T + ++ E V D E +FI L ++G D D+IRG IG K
Sbjct: 161 DKVSRFSFTTRREYHLRDMYEHH---NVDDVE--QFISLKAIMG-DLGDNIRGVEGIGAK 214
Query: 224 RAIELLYSFIDLCILLGCDYCDSIRGIGPKRAIELIKEHR---SIEKILENIDTKKYTVP 280
R ++ F ++ ++ D + G ++ I+ + IL ++ T
Sbjct: 215 RGYNIIREFGNVLDII-----DQLPLPGKQKYIQNLNASEELLFRNLILVDLPTYCVDAI 269
>1bgx_T TAQ DNA polymerase; DNA polymerase, FAB, PCR, inhibition,
helix-coil dynamics, inhibitor design, complex
(polymerase/inhibitor); 2.30A {Thermus aquaticus} SCOP:
a.60.7.1 c.120.1.2 c.55.3.5 e.8.1.1 PDB: 1cmw_A 1tau_A*
1taq_A*
Length = 832
Score = 50.6 bits (122), Expect = 1e-06
Identities = 20/69 (28%), Positives = 34/69 (49%), Gaps = 10/69 (14%)
Query: 116 EKVLEGMELSHEEFIDLCILLGCDYCDS------IRGIGPKRAIELIKEHRSIEKILENI 169
+ E L +++ D L G D ++GIG K A +L++E S+E +L+N+
Sbjct: 166 AWLWEKYGLRPDQWADYRALTG----DESDNLPGVKGIGEKTARKLLEEWGSLEALLKNL 221
Query: 170 DTKKYTVPE 178
D K + E
Sbjct: 222 DRLKPAIRE 230
Score = 46.8 bits (112), Expect = 1e-05
Identities = 20/69 (28%), Positives = 33/69 (47%), Gaps = 17/69 (24%)
Query: 219 GIGPKRAIELLYSFIDLCILLGCDYCDS------IRGIGPKRAIELIKEHRSIEKILENI 272
G+ P + + D L G D ++GIG K A +L++E S+E +L+N+
Sbjct: 173 GLRPDQ-------WADYRALTG----DESDNLPGVKGIGEKTARKLLEEWGSLEALLKNL 221
Query: 273 DTKKYTVPE 281
D K + E
Sbjct: 222 DRLKPAIRE 230
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 48.1 bits (114), Expect = 8e-06
Identities = 76/456 (16%), Positives = 135/456 (29%), Gaps = 177/456 (38%)
Query: 151 RAIELIKEHRSIEKILENIDTKKYTVPEG--WLYKEARELFRH--PEV-----ADPETIE 201
R + L H S+E +L VP ++ + +E F PE AD E
Sbjct: 7 RPLTL--SHGSLEHVLL--------VPTASFFIASQLQEQFNKILPEPTEGFAADDEPTT 56
Query: 202 FIDLCI-LLGCDYCDSIR---GIGPKRAI-ELLYSFIDLCILLGCD------YCDSIRGI 250
+L LG Y S+ +G + L + + C L G D
Sbjct: 57 PAELVGKFLG--YVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDT 114
Query: 251 GPKRAIELIK--------EHRSIEK-----ILENIDTKK---YTV------PEGWLYKEA 288
+ ELIK R +K + + + + + +E
Sbjct: 115 TLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYF-EEL 173
Query: 289 RELFR--HPEIADPETIELVADV---APSSIRESRKIC---ID----------------- 323
R+L++ H + D I+ A+ + ++ K+ ++
Sbjct: 174 RDLYQTYHVLVGD--LIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYL 231
Query: 324 --ASMS-----LYQ---FLIAVRSEGNQLMSVDGEPTSHLMGT----------------- 356
+S + Q +++ + G + GE S+L G
Sbjct: 232 LSIPISCPLIGVIQLAHYVVTAKLLG---FTP-GELRSYLKGATGHSQGLVTAVAIAETD 287
Query: 357 ----FYRTIR-----LVEHGLK-----PIYVFDGKPPT-----LKSGE------LNKRME 391
F+ ++R L G++ P PP+ L++ E L+
Sbjct: 288 SWESFFVSVRKAITVLFFIGVRCYEAYPNTSL---PPSILEDSLENNEGVPSPMLSISNL 344
Query: 392 KREDAQKALAKAQEQGKLKWSDPDED----GLVKYLCGDKNF-----AED------RIRN 436
+E Q + K P LV G KN + +R
Sbjct: 345 TQEQVQDYVNKTNSHL------PAGKQVEISLV---NGAKNLVVSGPPQSLYGLNLTLRK 395
Query: 437 GAKKLLKARSTTTQGRLDSFFTIRREEKRKSRCQYQ 472
KA S Q R+ F+ +RK + +
Sbjct: 396 -----AKAPSGLDQSRIP--FS-----ERKLKFSNR 419
Score = 45.0 bits (106), Expect = 6e-05
Identities = 81/470 (17%), Positives = 141/470 (30%), Gaps = 178/470 (37%)
Query: 15 KYLCGDKNFAEDRIRNGAKKLLKARSST---TQGRLDSFFTIRREEKRKAPCEAEAQCAA 71
YL G+ D I A KLL+ +T T+ + ++ T R KR ++ +
Sbjct: 94 CYLEGN-----D-IHALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFR 147
Query: 72 MVKAG--KVYATATEDMDALTFG--SNILLRHMTFSEARKLPVQEFHLEKVLEGMELSHE 127
V G ++ A FG N F E R L + VL
Sbjct: 148 AVGEGNAQLVAI---------FGGQGNT---DDYFEELRDL----YQTYHVLV------G 185
Query: 128 EFIDLCI-LLGCDYCDSIRGIGPKRAIELIKEHRSIEKIL-ENIDTKKYTVPEGWLYKEA 185
+ I L ELI+ EK+ + ++ + WL +
Sbjct: 186 DLIKFSAETL----------------SELIRTTLDAEKVFTQGLNILE------WLENPS 223
Query: 186 R----ELFRHPEVADP-----ETIEFIDLCILLGC---DYCDSIRGI-GPKRAI------ 226
+ ++ P + ++ LLG + ++G G + +
Sbjct: 224 NTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAI 283
Query: 227 ----------ELLYSFIDLCILLGC-----------------DYCD----------SIRG 249
+ I + +G D + SI
Sbjct: 284 AETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISN 343
Query: 250 IGPKRAIELIK-------EHRSIEKILENIDTKKYTV---PEGWLYKEARELFRHPEIAD 299
+ ++ + + + +E L N K V P+ LY L R +
Sbjct: 344 LTQEQVQDYVNKTNSHLPAGKQVEISLVN-GAKNLVVSGPPQS-LYGLNLTL-RKAK--- 397
Query: 300 PETIELVADVAPSSIRES------RKICIDASMSLYQFL-IAVRSEGNQLMSVDGEPT-S 351
APS + +S RK+ +FL +A P S
Sbjct: 398 ----------APSGLDQSRIPFSERKLKFS-----NRFLPVAS-------------PFHS 429
Query: 352 HLMGTFYRTI--RLVEHGLK--------PIY-VFDGKPPTLKSGELNKRM 390
HL+ I LV++ + P+Y FDG + SG +++R+
Sbjct: 430 HLLVPASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVLSGSISERI 479
>1igr_A Insulin-like growth factor receptor 1; hormone receptor, insulin
receptor family; HET: NAG FUC BMA MAN; 2.60A {Homo
sapiens} SCOP: c.10.2.5 c.10.2.5 g.3.9.1
Length = 478
Score = 43.3 bits (101), Expect = 1e-04
Identities = 7/74 (9%), Positives = 17/74 (22%)
Query: 456 FFTIRREEKRKSRCQYQCQYQCQYQCQYQCQCQCQCQCQCQCQCQYQYQYQYQYQYQYQY 515
+ + K + + + +C +CQ + +
Sbjct: 138 YIVGNKPPKECGDLCPGTMEEKPMCEKTTINNEYNYRCWTTNRCQKMCPSTCGKRACTEN 197
Query: 516 QYQCQCQCQCQCQY 529
C +C C
Sbjct: 198 NECCHPECLGSCSA 211
Score = 39.8 bits (92), Expect = 0.002
Identities = 8/66 (12%), Positives = 16/66 (24%), Gaps = 1/66 (1%)
Query: 467 SRCQYQCQYQCQYQCQYQCQCQ-CQCQCQCQCQCQYQYQYQYQYQYQYQYQYQCQCQCQC 525
S + +C + + +Y Y+ +CQ C
Sbjct: 128 SLILDAVSNNYIVGNKPPKECGDLCPGTMEEKPMCEKTTINNEYNYRCWTTNRCQKMCPS 187
Query: 526 QCQYQY 531
C +
Sbjct: 188 TCGKRA 193
Score = 36.0 bits (82), Expect = 0.029
Identities = 10/67 (14%), Positives = 19/67 (28%), Gaps = 2/67 (2%)
Query: 465 RKSRCQYQCQYQCQYQCQYQCQCQCQCQCQCQCQCQYQYQYQYQYQYQYQYQYQCQCQC- 523
Y + +C C + + C + +Y Y+ + Q C C
Sbjct: 132 DAVSNNYIVGNKPPKECGDLCPGTMEEKPMC-EKTTINNEYNYRCWTTNRCQKMCPSTCG 190
Query: 524 QCQCQYQ 530
+ C
Sbjct: 191 KRACTEN 197
Score = 36.0 bits (82), Expect = 0.033
Identities = 5/73 (6%), Positives = 12/73 (16%), Gaps = 7/73 (9%)
Query: 466 KSRCQYQCQYQCQYQCQYQCQCQCQC-QCQCQCQCQYQYQYQYQYQ------YQYQYQYQ 518
C C ++C + C + + + +
Sbjct: 227 AGVCVPACPPNTYRFEGWRCVDRDFCANILSAESSDSEGFVIHDGECMQECPSGFIRNGS 286
Query: 519 CQCQCQCQCQYQY 531
C
Sbjct: 287 QSMYCIPCEGPCP 299
Score = 36.0 bits (82), Expect = 0.034
Identities = 13/88 (14%), Positives = 24/88 (27%), Gaps = 24/88 (27%)
Query: 467 SRCQYQCQYQC-QYQCQYQCQCQCQCQCQCQCQ----------CQYQY------------ 503
+RCQ C C + C +C C +C C C++ Y
Sbjct: 179 NRCQKMCPSTCGKRACTENNEC-CHPECLGSCSAPDNDTACVACRHYYYAGVCVPACPPN 237
Query: 504 QYQYQYQYQYQYQYQCQCQCQCQCQYQY 531
Y+++ + +
Sbjct: 238 TYRFEGWRCVDRDFCANILSAESSDSEG 265
Score = 31.3 bits (70), Expect = 0.74
Identities = 5/62 (8%), Positives = 10/62 (16%)
Query: 470 QYQCQYQCQYQCQYQCQCQCQCQCQCQCQCQYQYQYQYQYQYQYQYQYQCQCQCQCQCQY 529
+C +C C + + + Q C
Sbjct: 270 DGECMQECPSGFIRNGSQSMYCIPCEGPCPKVCEEEKKTKTIDSVTSAQMLQGCTIFKGN 329
Query: 530 QY 531
Sbjct: 330 LL 331
Score = 31.0 bits (69), Expect = 1.2
Identities = 11/67 (16%), Positives = 17/67 (25%), Gaps = 7/67 (10%)
Query: 469 CQYQCQYQCQYQCQYQC-QCQCQCQC-----QCQCQCQYQYQYQYQYQYQYQYQYQCQCQ 522
+ +CQ C C + C +C C ++ Y Y C
Sbjct: 173 YRCWTTNRCQKMCPSTCGKRACTENNECCHPECLGSCSAPDNDTACVACRH-YYYAGVCV 231
Query: 523 CQCQCQY 529
C
Sbjct: 232 PACPPNT 238
Score = 30.6 bits (68), Expect = 1.4
Identities = 5/61 (8%), Positives = 10/61 (16%)
Query: 471 YQCQYQCQYQCQYQCQCQCQCQCQCQCQCQYQYQYQYQYQYQYQYQYQCQCQCQCQCQYQ 530
+C +C C + + + Q C
Sbjct: 267 VIHDGECMQECPSGFIRNGSQSMYCIPCEGPCPKVCEEEKKTKTIDSVTSAQMLQGCTIF 326
Query: 531 Y 531
Sbjct: 327 K 327
Score = 28.6 bits (63), Expect = 5.1
Identities = 4/63 (6%), Positives = 10/63 (15%)
Query: 465 RKSRCQYQCQYQCQYQCQYQCQCQCQCQCQCQCQCQYQYQYQYQYQYQYQYQYQCQCQCQ 524
+ +C +C C + + +
Sbjct: 257 SAESSDSEGFVIHDGECMQECPSGFIRNGSQSMYCIPCEGPCPKVCEEEKKTKTIDSVTS 316
Query: 525 CQC 527
Q
Sbjct: 317 AQM 319
Score = 27.9 bits (61), Expect = 9.7
Identities = 4/66 (6%), Positives = 11/66 (16%), Gaps = 1/66 (1%)
Query: 467 SRCQYQCQYQCQYQCQYQCQCQCQCQCQCQCQCQYQY-QYQYQYQYQYQYQYQCQCQCQC 525
C +C C + + + + Q +
Sbjct: 271 GECMQECPSGFIRNGSQSMYCIPCEGPCPKVCEEEKKTKTIDSVTSAQMLQGCTIFKGNL 330
Query: 526 QCQYQY 531
+
Sbjct: 331 LINIRR 336
>2ahx_A P180ERBB4, receptor tyrosine-protein kinase ERBB-4; X-RAY
crystallography, neuregulins, heparin-binding, cell CY
signaling protein; HET: NAG NDG; 2.40A {Homo sapiens}
PDB: 3u2p_A*
Length = 617
Score = 43.1 bits (100), Expect = 2e-04
Identities = 5/66 (7%), Positives = 10/66 (15%)
Query: 466 KSRCQYQCQYQCQYQCQYQCQCQCQCQCQCQCQCQYQYQYQYQYQYQYQYQYQCQCQCQC 525
+ Q + + C Q ++ C C
Sbjct: 455 STINQRIVIRDNRKAENCTAEGMVCNHLCSSDGCWGPGPDQCLSCRRFSRGRICIESCNL 514
Query: 526 QCQYQY 531
Sbjct: 515 YDGEFR 520
Score = 40.0 bits (92), Expect = 0.002
Identities = 8/61 (13%), Positives = 14/61 (22%), Gaps = 3/61 (4%)
Query: 469 CQYQCQYQCQYQCQYQCQCQCQCQCQCQCQCQYQYQYQYQYQYQYQYQYQCQCQCQCQCQ 528
C QC + C C +++ +C QC+
Sbjct: 484 SSDGCWGPGPDQCLSCRRFSRGRICIESCNLYDGEFREFENDSICV---ECDPQCEKMED 540
Query: 529 Y 529
Sbjct: 541 G 541
Score = 40.0 bits (92), Expect = 0.002
Identities = 4/66 (6%), Positives = 12/66 (18%)
Query: 466 KSRCQYQCQYQCQYQCQYQCQCQCQCQCQCQCQCQYQYQYQYQYQYQYQYQYQCQCQCQC 525
++ + C + C Q ++ C
Sbjct: 457 INQRIVIRDNRKAENCTAEGMVCNHLCSSDGCWGPGPDQCLSCRRFSRGRICIESCNLYD 516
Query: 526 QCQYQY 531
++
Sbjct: 517 GEFREF 522
Score = 39.3 bits (90), Expect = 0.003
Identities = 5/64 (7%), Positives = 11/64 (17%)
Query: 464 KRKSRCQYQCQYQCQYQCQYQCQCQCQCQCQCQCQCQYQYQYQYQYQYQYQYQYQCQCQC 523
++ C + C QC + + +
Sbjct: 467 RKAENCTAEGMVCNHLCSSDGCWGPGPDQCLSCRRFSRGRICIESCNLYDGEFREFENDS 526
Query: 524 QCQC 527
C
Sbjct: 527 ICVE 530
Score = 38.5 bits (88), Expect = 0.005
Identities = 5/61 (8%), Positives = 7/61 (11%)
Query: 469 CQYQCQYQCQYQCQYQCQCQCQCQCQCQCQCQYQYQYQYQYQYQYQYQYQCQCQCQCQCQ 528
Y Q + + C QC
Sbjct: 438 DNSNLCYYHTINWTTLFSTINQRIVIRDNRKAENCTAEGMVCNHLCSSDGCWGPGPDQCL 497
Query: 529 Y 529
Sbjct: 498 S 498
Score = 38.5 bits (88), Expect = 0.005
Identities = 5/63 (7%), Positives = 9/63 (14%)
Query: 469 CQYQCQYQCQYQCQYQCQCQCQCQCQCQCQCQYQYQYQYQYQYQYQYQYQCQCQCQCQCQ 528
Q + C + Q ++ C C
Sbjct: 454 FSTINQRIVIRDNRKAENCTAEGMVCNHLCSSDGCWGPGPDQCLSCRRFSRGRICIESCN 513
Query: 529 YQY 531
Sbjct: 514 LYD 516
Score = 37.7 bits (86), Expect = 0.008
Identities = 6/66 (9%), Positives = 10/66 (15%)
Query: 466 KSRCQYQCQYQCQYQCQYQCQCQCQCQCQCQCQCQYQYQYQYQYQYQYQYQYQCQCQCQC 525
S Y Q + C + QC
Sbjct: 439 NSNLCYYHTINWTTLFSTINQRIVIRDNRKAENCTAEGMVCNHLCSSDGCWGPGPDQCLS 498
Query: 526 QCQYQY 531
++
Sbjct: 499 CRRFSR 504
Score = 37.3 bits (85), Expect = 0.011
Identities = 6/67 (8%), Positives = 8/67 (11%)
Query: 465 RKSRCQYQCQYQCQYQCQYQCQCQCQCQCQCQCQCQYQYQYQYQYQYQYQYQYQCQCQCQ 524
C QC Y + + C C
Sbjct: 226 MNFNDSGACVTQCPQTFVYNPTTFQLEHNFNAKYTYGAFCVKKCPHNFVVDSSSCVRACP 285
Query: 525 CQCQYQY 531
Sbjct: 286 SSKMEVE 292
Score = 36.9 bits (84), Expect = 0.014
Identities = 11/88 (12%), Positives = 20/88 (22%), Gaps = 3/88 (3%)
Query: 447 TTTQGRLDSFFTIRREEKRKSRCQYQCQYQCQYQCQYQCQCQCQC--QCQCQCQCQYQYQ 504
+T + R+ E + C QC + C
Sbjct: 454 FSTINQRIVIRDNRKAENCTAEGMVCNHLCSSDGCWGPGPDQCLSCRRFSRGRICIESCN 513
Query: 505 YQYQYQYQYQYQYQCQ-CQCQCQCQYQY 531
+++ C C QC+
Sbjct: 514 LYDGEFREFENDSICVECDPQCEKMEDG 541
Score = 36.6 bits (83), Expect = 0.021
Identities = 4/63 (6%), Positives = 7/63 (11%)
Query: 468 RCQYQCQYQCQYQCQYQCQCQCQCQCQCQCQCQYQYQYQYQYQYQYQYQYQCQCQCQCQC 527
Q + C + Q + C
Sbjct: 449 NWTTLFSTINQRIVIRDNRKAENCTAEGMVCNHLCSSDGCWGPGPDQCLSCRRFSRGRIC 508
Query: 528 QYQ 530
Sbjct: 509 IES 511
Score = 35.4 bits (80), Expect = 0.053
Identities = 4/67 (5%), Positives = 8/67 (11%)
Query: 462 EEKRKSRCQYQCQYQCQYQCQYQCQCQCQCQCQCQCQCQYQYQYQYQYQYQYQYQYQCQC 521
+ Q + C + Q +
Sbjct: 445 YHTINWTTLFSTINQRIVIRDNRKAENCTAEGMVCNHLCSSDGCWGPGPDQCLSCRRFSR 504
Query: 522 QCQCQCQ 528
C
Sbjct: 505 GRICIES 511
Score = 35.0 bits (79), Expect = 0.065
Identities = 8/88 (9%), Positives = 16/88 (18%), Gaps = 25/88 (28%)
Query: 469 CQYQCQYQCQYQCQYQCQCQCQCQCQCQCQCQYQYQYQYQYQ------------------ 510
C QC ++ C C +++
Sbjct: 488 CWGPGPDQCLSCRRFSRGRICIESCNLYDGEFREFENDSICVECDPQCEKMEDGLLTCHG 547
Query: 511 -------YQYQYQYQCQCQCQCQCQYQY 531
++ C +C Q
Sbjct: 548 PGPDNCTKCSHFKDGPNCVEKCPDGLQG 575
Score = 35.0 bits (79), Expect = 0.069
Identities = 1/62 (1%), Positives = 8/62 (12%)
Query: 469 CQYQCQYQCQYQCQYQCQCQCQCQCQCQCQCQYQYQYQYQYQYQYQYQYQCQCQCQCQCQ 528
+ + + + + + +
Sbjct: 345 LVTGIHGDPYNAIEAIDPEKLNVFRTVREITGFLNIQSWPPNMTDFSVFSNLVTIGGRVL 404
Query: 529 YQ 530
Y
Sbjct: 405 YS 406
Score = 34.6 bits (78), Expect = 0.089
Identities = 7/64 (10%), Positives = 11/64 (17%), Gaps = 1/64 (1%)
Query: 469 CQYQCQYQCQYQCQYQCQCQCQCQCQCQCQCQYQYQY-QYQYQYQYQYQYQCQCQCQCQC 527
+ Y + Q Q Q + Y Y +
Sbjct: 399 IGGRVLYSGLSLLILKQQGITSLQFQSLKEISAGNIYITDNSNLCYYHTINWTTLFSTIN 458
Query: 528 QYQY 531
Q
Sbjct: 459 QRIV 462
Score = 33.9 bits (76), Expect = 0.15
Identities = 0/66 (0%), Positives = 5/66 (7%)
Query: 465 RKSRCQYQCQYQCQYQCQYQCQCQCQCQCQCQCQCQYQYQYQYQYQYQYQYQYQCQCQCQ 524
+ + + +
Sbjct: 329 IDKFINCTKINGNLIFLVTGIHGDPYNAIEAIDPEKLNVFRTVREITGFLNIQSWPPNMT 388
Query: 525 CQCQYQ 530
+
Sbjct: 389 DFSVFS 394
Score = 33.9 bits (76), Expect = 0.16
Identities = 4/65 (6%), Positives = 8/65 (12%)
Query: 467 SRCQYQCQYQCQYQCQYQCQCQCQCQCQCQCQCQYQYQYQYQYQYQYQYQYQCQCQCQCQ 526
+ + + Y + Q Q
Sbjct: 363 EKLNVFRTVREITGFLNIQSWPPNMTDFSVFSNLVTIGGRVLYSGLSLLILKQQGITSLQ 422
Query: 527 CQYQY 531
Q
Sbjct: 423 FQSLK 427
Score = 33.5 bits (75), Expect = 0.20
Identities = 6/64 (9%), Positives = 9/64 (14%), Gaps = 1/64 (1%)
Query: 468 RCQYQCQYQCQYQCQYQCQCQCQCQCQCQCQCQYQYQYQYQY-QYQYQYQYQCQCQCQCQ 526
+ Y + Q Q Q + Y Y
Sbjct: 394 SNLVTIGGRVLYSGLSLLILKQQGITSLQFQSLKEISAGNIYITDNSNLCYYHTINWTTL 453
Query: 527 CQYQ 530
Sbjct: 454 FSTI 457
Score = 33.1 bits (74), Expect = 0.26
Identities = 4/62 (6%), Positives = 7/62 (11%), Gaps = 1/62 (1%)
Query: 469 CQYQCQYQCQYQCQYQCQCQCQCQCQCQCQCQYQYQYQYQYQYQYQYQYQCQCQCQCQCQ 528
Y Q + + C C
Sbjct: 430 SAGNIYITDNSNLCYYHTINWTTLFSTINQRIVIRDNRKAENCTAEGMV-CNHLCSSDGC 488
Query: 529 YQ 530
+
Sbjct: 489 WG 490
Score = 33.1 bits (74), Expect = 0.26
Identities = 7/78 (8%), Positives = 14/78 (17%)
Query: 454 DSFFTIRREEKRKSRCQYQCQYQCQYQCQYQCQCQCQCQCQCQCQCQYQYQYQYQYQYQY 513
D + I + K + + + Y
Sbjct: 352 DPYNAIEAIDPEKLNVFRTVREITGFLNIQSWPPNMTDFSVFSNLVTIGGRVLYSGLSLL 411
Query: 514 QYQYQCQCQCQCQCQYQY 531
+ Q Q Q +
Sbjct: 412 ILKQQGITSLQFQSLKEI 429
Score = 32.7 bits (73), Expect = 0.32
Identities = 3/63 (4%), Positives = 5/63 (7%), Gaps = 1/63 (1%)
Query: 468 RCQYQCQYQCQYQCQYQCQCQCQCQCQCQCQCQYQYQYQYQYQYQYQYQYQCQCQCQCQC 527
Y Q + + C
Sbjct: 433 NIYITDNSNLCYYHTINWTTLFSTINQRIVIRDNRKAENCTAEGMVCNH-LCSSDGCWGP 491
Query: 528 QYQ 530
Sbjct: 492 GPD 494
Score = 32.7 bits (73), Expect = 0.34
Identities = 0/76 (0%), Positives = 9/76 (11%)
Query: 455 SFFTIRREEKRKSRCQYQCQYQCQYQCQYQCQCQCQCQCQCQCQCQYQYQYQYQYQYQYQ 514
+ + ++ + + + +
Sbjct: 323 TVDSSNIDKFINCTKINGNLIFLVTGIHGDPYNAIEAIDPEKLNVFRTVREITGFLNIQS 382
Query: 515 YQYQCQCQCQCQCQYQ 530
+
Sbjct: 383 WPPNMTDFSVFSNLVT 398
Score = 32.3 bits (72), Expect = 0.42
Identities = 12/62 (19%), Positives = 17/62 (27%), Gaps = 1/62 (1%)
Query: 467 SRCQYQCQYQCQYQCQYQCQCQCQCQCQCQCQCQYQYQYQYQYQYQYQYQYQCQCQCQCQ 526
RC C +C + CQ + C QC + Y + C
Sbjct: 163 GRCHKSCTGRCWGPTENHCQTLTRTVCAEQCDGRC-YGPYVSDCCHRECAGGCSGPKDTD 221
Query: 527 CQ 528
C
Sbjct: 222 CF 223
Score = 31.9 bits (71), Expect = 0.52
Identities = 4/61 (6%), Positives = 8/61 (13%)
Query: 470 QYQCQYQCQYQCQYQCQCQCQCQCQCQCQCQYQYQYQYQYQYQYQYQYQCQCQCQCQCQY 529
+ C C C ++ + Y
Sbjct: 295 GIKMCKPCTDICPKACDGIGTGSLMSAQTVDSSNIDKFINCTKINGNLIFLVTGIHGDPY 354
Query: 530 Q 530
Sbjct: 355 N 355
Score = 31.9 bits (71), Expect = 0.55
Identities = 1/65 (1%), Positives = 8/65 (12%)
Query: 467 SRCQYQCQYQCQYQCQYQCQCQCQCQCQCQCQCQYQYQYQYQYQYQYQYQYQCQCQCQCQ 526
+ + + + + +
Sbjct: 341 NLIFLVTGIHGDPYNAIEAIDPEKLNVFRTVREITGFLNIQSWPPNMTDFSVFSNLVTIG 400
Query: 527 CQYQY 531
+ Y
Sbjct: 401 GRVLY 405
Score = 31.9 bits (71), Expect = 0.56
Identities = 4/71 (5%), Positives = 10/71 (14%)
Query: 461 REEKRKSRCQYQCQYQCQYQCQYQCQCQCQCQCQCQCQCQYQYQYQYQYQYQYQYQYQCQ 520
E+ + C C C ++ + +
Sbjct: 290 EVEENGIKMCKPCTDICPKACDGIGTGSLMSAQTVDSSNIDKFINCTKINGNLIFLVTGI 349
Query: 521 CQCQCQCQYQY 531
Sbjct: 350 HGDPYNAIEAI 360
Score = 30.8 bits (68), Expect = 1.3
Identities = 10/63 (15%), Positives = 17/63 (26%), Gaps = 2/63 (3%)
Query: 467 SRCQYQCQYQCQYQCQYQCQCQCQCQCQCQCQCQYQYQYQYQYQYQYQYQYQC-QCQCQC 525
+ C +C C +C + CQ + Q + Y +C C
Sbjct: 156 TNGSSGCG-RCHKSCTGRCWGPTENHCQTLTRTVCAEQCDGRCYGPYVSDCCHRECAGGC 214
Query: 526 QCQ 528
Sbjct: 215 SGP 217
Score = 30.8 bits (68), Expect = 1.4
Identities = 2/61 (3%), Positives = 5/61 (8%)
Query: 471 YQCQYQCQYQCQYQCQCQCQCQCQCQCQCQYQYQYQYQYQYQYQYQYQCQCQCQCQCQYQ 530
+ Q C + +
Sbjct: 307 PKACDGIGTGSLMSAQTVDSSNIDKFINCTKINGNLIFLVTGIHGDPYNAIEAIDPEKLN 366
Query: 531 Y 531
Sbjct: 367 V 367
Score = 30.8 bits (68), Expect = 1.4
Identities = 4/62 (6%), Positives = 9/62 (14%)
Query: 467 SRCQYQCQYQCQYQCQYQCQCQCQCQCQCQCQCQYQYQYQYQYQYQYQYQYQCQCQCQCQ 526
+ + + Y + Q Q Q +
Sbjct: 369 RTVREITGFLNIQSWPPNMTDFSVFSNLVTIGGRVLYSGLSLLILKQQGITSLQFQSLKE 428
Query: 527 CQ 528
Sbjct: 429 IS 430
Score = 30.8 bits (68), Expect = 1.4
Identities = 0/63 (0%), Positives = 6/63 (9%)
Query: 469 CQYQCQYQCQYQCQYQCQCQCQCQCQCQCQCQYQYQYQYQYQYQYQYQYQCQCQCQCQCQ 528
+ + + + + +
Sbjct: 347 TGIHGDPYNAIEAIDPEKLNVFRTVREITGFLNIQSWPPNMTDFSVFSNLVTIGGRVLYS 406
Query: 529 YQY 531
Sbjct: 407 GLS 409
Score = 30.4 bits (67), Expect = 1.7
Identities = 12/84 (14%), Positives = 19/84 (22%), Gaps = 18/84 (21%)
Query: 466 KSRCQYQCQYQCQYQCQYQCQCQCQCQCQCQC--------------QCQYQYQ----YQY 507
++ CQ + C QC +C C + C
Sbjct: 178 ENHCQTLTRTVCAEQCDGRCYGPYVSDCCHRECAGGCSGPKDTDCFACMNFNDSGACVTQ 237
Query: 508 QYQYQYQYQYQCQCQCQCQCQYQY 531
Q Q + +Y Y
Sbjct: 238 CPQTFVYNPTTFQLEHNFNAKYTY 261
Score = 30.4 bits (67), Expect = 1.8
Identities = 6/62 (9%), Positives = 12/62 (19%)
Query: 467 SRCQYQCQYQCQYQCQYQCQCQCQCQCQCQCQCQYQYQYQYQYQYQYQYQYQCQCQCQCQ 526
+C C +C + Q + Q + C
Sbjct: 147 WPSNLTLVSTNGSSGCGRCHKSCTGRCWGPTENHCQTLTRTVCAEQCDGRCYGPYVSDCC 206
Query: 527 CQ 528
+
Sbjct: 207 HR 208
Score = 30.4 bits (67), Expect = 1.9
Identities = 8/72 (11%), Positives = 15/72 (20%), Gaps = 9/72 (12%)
Query: 468 RCQYQCQYQCQYQCQYQCQCQCQC---------QCQCQCQCQYQYQYQYQYQYQYQYQYQ 518
+Q ++ + Y C +C C C + +
Sbjct: 246 PTTFQLEHNFNAKYTYGAFCVKKCPHNFVVDSSSCVRACPSSKMEVEENGIKMCKPCTDI 305
Query: 519 CQCQCQCQCQYQ 530
C C
Sbjct: 306 CPKACDGIGTGS 317
Score = 30.0 bits (66), Expect = 2.4
Identities = 10/78 (12%), Positives = 21/78 (26%)
Query: 453 LDSFFTIRREEKRKSRCQYQCQYQCQYQCQYQCQCQCQCQCQCQCQCQYQYQYQYQYQYQ 512
L TI ++ ++ +C C +C + Q +
Sbjct: 131 LCYADTIHWQDIVRNPWPSNLTLVSTNGSSGCGRCHKSCTGRCWGPTENHCQTLTRTVCA 190
Query: 513 YQYQYQCQCQCQCQCQYQ 530
Q +C C ++
Sbjct: 191 EQCDGRCYGPYVSDCCHR 208
Score = 29.6 bits (65), Expect = 2.6
Identities = 7/63 (11%), Positives = 13/63 (20%)
Query: 469 CQYQCQYQCQYQCQYQCQCQCQCQCQCQCQCQYQYQYQYQYQYQYQYQYQCQCQCQCQCQ 528
+ +C C +C + Q + QC +C
Sbjct: 143 VRNPWPSNLTLVSTNGSSGCGRCHKSCTGRCWGPTENHCQTLTRTVCAEQCDGRCYGPYV 202
Query: 529 YQY 531
Sbjct: 203 SDC 205
Score = 29.6 bits (65), Expect = 2.7
Identities = 4/66 (6%), Positives = 6/66 (9%), Gaps = 1/66 (1%)
Query: 467 SRCQYQCQYQCQYQCQYQCQ-CQCQCQCQCQCQCQYQYQYQYQYQYQYQYQYQCQCQCQC 525
C C C Q +
Sbjct: 300 KPCTDICPKACDGIGTGSLMSAQTVDSSNIDKFINCTKINGNLIFLVTGIHGDPYNAIEA 359
Query: 526 QCQYQY 531
+
Sbjct: 360 IDPEKL 365
Score = 29.6 bits (65), Expect = 3.2
Identities = 3/62 (4%), Positives = 10/62 (16%), Gaps = 1/62 (1%)
Query: 469 CQYQCQYQCQYQCQYQCQCQCQCQCQCQCQCQYQYQYQYQYQYQYQYQYQCQCQCQCQCQ 528
Q + + + C +C + + +
Sbjct: 241 TFVYNPTTFQLEHNFNAKYTYGAFCVKKCPHNF-VVDSSSCVRACPSSKMEVEENGIKMC 299
Query: 529 YQ 530
Sbjct: 300 KP 301
Score = 28.5 bits (62), Expect = 6.7
Identities = 5/79 (6%), Positives = 11/79 (13%), Gaps = 13/79 (16%)
Query: 466 KSRCQYQCQYQCQYQCQYQC-------------QCQCQCQCQCQCQCQYQYQYQYQYQYQ 512
+ Q + + +Y C C C + +
Sbjct: 246 PTTFQLEHNFNAKYTYGAFCVKKCPHNFVVDSSSCVRACPSSKMEVEENGIKMCKPCTDI 305
Query: 513 YQYQYQCQCQCQCQCQYQY 531
Sbjct: 306 CPKACDGIGTGSLMSAQTV 324
Score = 28.5 bits (62), Expect = 7.4
Identities = 3/62 (4%), Positives = 8/62 (12%)
Query: 467 SRCQYQCQYQCQYQCQYQCQCQCQCQCQCQCQCQYQYQYQYQYQYQYQYQYQCQCQCQCQ 526
S + + C C ++ +
Sbjct: 286 SSKMEVEENGIKMCKPCTDICPKACDGIGTGSLMSAQTVDSSNIDKFINCTKINGNLIFL 345
Query: 527 CQ 528
Sbjct: 346 VT 347
>1mox_A Epidermal growth factor receptor; EGFR, receptor, complex,
transferase-growth F complex; HET: NAG FUC BMA MAN;
2.50A {Homo sapiens} SCOP: c.10.2.5 c.10.2.5 g.3.9.1
g.3.9.1
Length = 501
Score = 42.6 bits (99), Expect = 3e-04
Identities = 9/67 (13%), Positives = 15/67 (22%), Gaps = 1/67 (1%)
Query: 465 RKSRCQYQCQYQCQYQCQYQCQCQCQCQCQCQCQCQYQYQYQYQYQYQYQYQYQCQCQCQ 524
RK R + C+ C Y + + + + Y C
Sbjct: 228 RKFRDEATCKDTCPPLMLYNPTTYQ-MDVNPEGKYSFGATCVKKCPRNYVVTDHGSCVRA 286
Query: 525 CQCQYQY 531
C
Sbjct: 287 CGADSYE 293
Score = 38.4 bits (88), Expect = 0.006
Identities = 12/69 (17%), Positives = 23/69 (33%), Gaps = 7/69 (10%)
Query: 469 CQYQCQYQCQYQCQYQCQCQCQCQCQCQC---QCQYQYQYQYQYQ----YQYQYQYQCQC 521
+ CQ + C QC +C+ + C QC + +++ + C+
Sbjct: 179 GEENCQKLTKIICAQQCSGRCRGKSPSDCCHNQCAAGCTGPRESDCLVCRKFRDEATCKD 238
Query: 522 QCQCQCQYQ 530
C Y
Sbjct: 239 TCPPLMLYN 247
Score = 38.0 bits (87), Expect = 0.007
Identities = 13/76 (17%), Positives = 21/76 (27%), Gaps = 10/76 (13%)
Query: 466 KSRCQYQCQYQCQYQ-----CQYQCQCQCQCQCQCQCQ-CQYQYQ----YQYQYQYQYQY 515
K C QC +C+ + C QC C + C C+
Sbjct: 188 KIICAQQCSGRCRGKSPSDCCHNQCAAGCTGPRESDCLVCRKFRDEATCKDTCPPLMLYN 247
Query: 516 QYQCQCQCQCQCQYQY 531
Q + +Y +
Sbjct: 248 PTTYQMDVNPEGKYSF 263
Score = 35.3 bits (80), Expect = 0.043
Identities = 5/66 (7%), Positives = 11/66 (16%), Gaps = 3/66 (4%)
Query: 469 CQYQCQYQCQYQCQYQCQCQCQCQCQCQCQCQYQYQYQYQYQYQYQ---YQYQCQCQCQC 525
+Y C +C C C + + + +
Sbjct: 259 GKYSFGATCVKKCPRNYVVTDHGSCVRACGADSYEMEEDGVRKCKKCEGPCRKVCNGIGI 318
Query: 526 QCQYQY 531
Sbjct: 319 GEFKDS 324
Score = 35.3 bits (80), Expect = 0.056
Identities = 8/67 (11%), Positives = 13/67 (19%), Gaps = 4/67 (5%)
Query: 466 KSRCQYQCQYQCQYQCQYQCQCQCQCQC-QCQCQCQYQYQYQYQYQYQYQY---QYQCQC 521
K C Y C +C Y Y+ +
Sbjct: 237 KDTCPPLMLYNPTTYQMDVNPEGKYSFGATCVKKCPRNYVVTDHGSCVRACGADSYEMEE 296
Query: 522 QCQCQCQ 528
+C+
Sbjct: 297 DGVRKCK 303
Score = 34.5 bits (78), Expect = 0.080
Identities = 8/64 (12%), Positives = 14/64 (21%), Gaps = 1/64 (1%)
Query: 469 CQYQCQYQCQYQCQYQCQCQCQCQCQC-QCQCQYQYQYQYQYQYQYQYQYQCQCQCQCQC 527
Q +C C C + Q + QC +C+ +
Sbjct: 144 VSSDFLSNMSMDFQNHLGSCQKCDPSCPNGSCWGAGEENCQKLTKIICAQQCSGRCRGKS 203
Query: 528 QYQY 531
Sbjct: 204 PSDC 207
Score = 34.1 bits (77), Expect = 0.12
Identities = 12/76 (15%), Positives = 19/76 (25%), Gaps = 13/76 (17%)
Query: 469 CQYQCQYQCQYQCQYQCQCQCQCQCQCQCQCQYQYQY---QYQYQYQYQYQYQC------ 519
C + CQ + C QC +C+ + Q + C
Sbjct: 171 PNGSCWGAGEENCQKLTKIICAQQCSGRCRGKSPSDCCHNQCAAGCTGPRESDCLVCRKF 230
Query: 520 ----QCQCQCQCQYQY 531
C+ C Y
Sbjct: 231 RDEATCKDTCPPLMLY 246
Score = 33.0 bits (74), Expect = 0.24
Identities = 10/79 (12%), Positives = 20/79 (25%), Gaps = 3/79 (3%)
Query: 453 LDSFFTIRREEKRKSRCQYQCQYQCQYQCQYQCQCQCQC---QCQCQCQCQYQYQYQYQY 509
L + +I+ + S Q +C C C + Q +
Sbjct: 132 LCNVESIQWRDIVSSDFLSNMSMDFQNHLGSCQKCDPSCPNGSCWGAGEENCQKLTKIIC 191
Query: 510 QYQYQYQYQCQCQCQCQCQ 528
Q + + + C
Sbjct: 192 AQQCSGRCRGKSPSDCCHN 210
Score = 32.6 bits (73), Expect = 0.33
Identities = 12/63 (19%), Positives = 18/63 (28%), Gaps = 10/63 (15%)
Query: 467 SRCQYQC-QYQCQYQCQYQCQCQCQCQCQCQCQCQYQYQYQYQYQYQYQYQYQCQCQCQC 525
+C C C + CQ + C QC + + + C QC
Sbjct: 164 QKCDPSCPNGSCWGAGEENCQKLTKIICAQQCSGRCRGKSPSDC---------CHNQCAA 214
Query: 526 QCQ 528
C
Sbjct: 215 GCT 217
Score = 30.3 bits (67), Expect = 1.7
Identities = 2/52 (3%), Positives = 9/52 (17%)
Query: 470 QYQCQYQCQYQCQYQCQCQCQCQCQCQCQCQYQYQYQYQYQYQYQYQYQCQC 521
Y+ + +C+ + ++
Sbjct: 291 SYEMEEDGVRKCKKCEGPCRKVCNGIGIGEFKDSLSINATNIKHFKNCTSIS 342
Score = 30.3 bits (67), Expect = 1.7
Identities = 5/63 (7%), Positives = 12/63 (19%), Gaps = 3/63 (4%)
Query: 466 KSRCQYQC---QYQCQYQCQYQCQCQCQCQCQCQCQCQYQYQYQYQYQYQYQYQYQCQCQ 522
C C Y+ + +C+ + ++ C
Sbjct: 280 HGSCVRACGADSYEMEEDGVRKCKKCEGPCRKVCNGIGIGEFKDSLSINATNIKHFKNCT 339
Query: 523 CQC 525
Sbjct: 340 SIS 342
Score = 30.3 bits (67), Expect = 1.9
Identities = 4/65 (6%), Positives = 13/65 (20%)
Query: 467 SRCQYQCQYQCQYQCQYQCQCQCQCQCQCQCQCQYQYQYQYQYQYQYQYQYQCQCQCQCQ 526
+ C +C C C + + + + + + +
Sbjct: 265 ATCVKKCPRNYVVTDHGSCVRACGADSYEMEEDGVRKCKKCEGPCRKVCNGIGIGEFKDS 324
Query: 527 CQYQY 531
Sbjct: 325 LSINA 329
Score = 28.7 bits (63), Expect = 4.9
Identities = 4/67 (5%), Positives = 10/67 (14%), Gaps = 3/67 (4%)
Query: 466 KSRCQYQCQYQCQYQC---QYQCQCQCQCQCQCQCQCQYQYQYQYQYQYQYQYQYQCQCQ 522
C C Y+ + +C+ +
Sbjct: 272 PRNYVVTDHGSCVRACGADSYEMEEDGVRKCKKCEGPCRKVCNGIGIGEFKDSLSINATN 331
Query: 523 CQCQCQY 529
+
Sbjct: 332 IKHFKNC 338
>2hr7_A Insulin receptor; hormone receptor, leucine rich repeat,
transferase; HET: NAG BMA MAN FUC P33; 2.32A {Homo
sapiens}
Length = 486
Score = 42.1 bits (98), Expect = 4e-04
Identities = 5/63 (7%), Positives = 15/63 (23%)
Query: 466 KSRCQYQCQYQCQYQCQYQCQCQCQCQCQCQCQCQYQYQYQYQYQYQYQYQYQCQCQCQC 525
+C C + + C + + + + + + C + C
Sbjct: 148 NKDDNEECGDICPGTAKGKTNCPATVINGQFVERCWTHSHCQKVCPTICKSHGCTAEGLC 207
Query: 526 QCQ 528
Sbjct: 208 CHS 210
Score = 40.6 bits (94), Expect = 0.001
Identities = 7/60 (11%), Positives = 10/60 (16%)
Query: 469 CQYQCQYQCQYQCQYQCQCQCQCQCQCQCQCQYQYQYQYQYQYQYQYQYQCQCQCQCQCQ 528
Q +C CQ C + +C C
Sbjct: 162 TAKGKTNCPATVINGQFVERCWTHSHCQKVCPTICKSHGCTAEGLCCHSECLGNCSQPDD 221
Score = 40.2 bits (93), Expect = 0.001
Identities = 8/66 (12%), Positives = 12/66 (18%), Gaps = 5/66 (7%)
Query: 468 RCQYQCQYQCQYQCQYQCQCQCQCQCQCQCQCQYQYQYQ-YQYQYQYQYQYQCQC---QC 523
C C Q +C Q + + C +C
Sbjct: 154 ECGDIC-PGTAKGKTNCPATVINGQFVERCWTHSHCQKVCPTICKSHGCTAEGLCCHSEC 212
Query: 524 QCQCQY 529
C
Sbjct: 213 LGNCSQ 218
Score = 38.3 bits (88), Expect = 0.006
Identities = 8/63 (12%), Positives = 14/63 (22%), Gaps = 5/63 (7%)
Query: 469 CQYQCQYQCQYQCQYQCQCQCQCQCQCQCQCQYQYQYQYQYQYQYQYQYQCQCQCQCQCQ 528
+C C + + C Q+ + CQ C C+
Sbjct: 143 NHIVLNKDDNEECGDICPGTAKGKTNCPATV-----INGQFVERCWTHSHCQKVCPTICK 197
Query: 529 YQY 531
Sbjct: 198 SHG 200
Score = 37.5 bits (86), Expect = 0.010
Identities = 7/64 (10%), Positives = 16/64 (25%), Gaps = 3/64 (4%)
Query: 471 YQCQYQCQYQC---QYQCQCQCQCQCQCQCQCQYQYQYQYQYQYQYQYQYQCQCQCQCQC 527
+ +C C Y Q ++ + + + +C +C
Sbjct: 231 FYLDGRCVETCPPPYYHFQDWRCVNFSFCQDLHHKCKNSRRQGCHQYVIHNNKCIPECPS 290
Query: 528 QYQY 531
Y
Sbjct: 291 GYTM 294
Score = 35.6 bits (81), Expect = 0.037
Identities = 7/69 (10%), Positives = 13/69 (18%), Gaps = 8/69 (11%)
Query: 470 QYQCQYQCQYQCQYQCQCQCQCQCQCQCQCQYQYQYQYQY-------QYQYQYQYQCQCQ 522
Y Q + +C+ + C + + C
Sbjct: 245 YYHFQDWRCVNFSFCQDLHHKCKNSRRQGCHQYVIHNNKCIPECPSGYTMNSSNLLCTP- 303
Query: 523 CQCQCQYQY 531
C C
Sbjct: 304 CLGPCPKVC 312
Score = 33.3 bits (75), Expect = 0.20
Identities = 10/71 (14%), Positives = 16/71 (22%), Gaps = 9/71 (12%)
Query: 466 KSRCQYQCQYQCQYQCQYQCQCQCQC-QCQCQCQCQYQYQYQYQYQYQYQYQYQCQC--- 521
+ Q +C Q C C C + + Q +C
Sbjct: 171 ATVINGQFVERCWTHSHCQKVCPTICKSHGCTAEGLCCHSECLGNCSQPDDPTKCVACRN 230
Query: 522 -----QCQCQC 527
+C C
Sbjct: 231 FYLDGRCVETC 241
Score = 29.8 bits (66), Expect = 2.2
Identities = 7/68 (10%), Positives = 15/68 (22%), Gaps = 9/68 (13%)
Query: 469 CQYQCQYQCQ--YQCQYQCQCQC-------QCQCQCQCQCQYQYQYQYQYQYQYQYQYQC 519
C+ + C +C +C C + + + +
Sbjct: 266 CKNSRRQGCHQYVIHNNKCIPECPSGYTMNSSNLLCTPCLGPCPKVCHLLEGEKTIDSVT 325
Query: 520 QCQCQCQC 527
Q C
Sbjct: 326 SAQELRGC 333
Score = 29.8 bits (66), Expect = 2.3
Identities = 5/62 (8%), Positives = 11/62 (17%), Gaps = 3/62 (4%)
Query: 471 YQCQYQCQYQC---QYQCQCQCQCQCQCQCQCQYQYQYQYQYQYQYQYQYQCQCQCQCQC 527
+C +C C + + + + Q C
Sbjct: 278 VIHNNKCIPECPSGYTMNSSNLLCTPCLGPCPKVCHLLEGEKTIDSVTSAQELRGCTVIN 337
Query: 528 QY 529
Sbjct: 338 GS 339
Score = 28.3 bits (62), Expect = 8.5
Identities = 5/64 (7%), Positives = 12/64 (18%)
Query: 467 SRCQYQCQYQCQYQCQYQCQCQCQCQCQCQCQCQYQYQYQYQYQYQYQYQYQCQCQCQCQ 526
++C +C C C C + + +
Sbjct: 282 NKCIPECPSGYTMNSSNLLCTPCLGPCPKVCHLLEGEKTIDSVTSAQELRGCTVINGSLI 341
Query: 527 CQYQ 530
+
Sbjct: 342 INIR 345
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 41.0 bits (95), Expect = 0.001
Identities = 52/397 (13%), Positives = 108/397 (27%), Gaps = 119/397 (29%)
Query: 110 VQEFHLEKVLEG-----MELSHEEFID--LCILLGCDYCDSIRGIG---PKRAIELIKEH 159
VQ+F +E+VL M E + + + D + K + ++ +
Sbjct: 79 VQKF-VEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPY 137
Query: 160 RSIEKILENIDTKKYTVPEG-------WLYKEARELFRHPEVADPETIEFIDLCIL---L 209
+ + L + K + +G W+ + + +D I L
Sbjct: 138 LKLRQALLELRPAKNVLIDGVLGSGKTWVALDV--------CLSYKVQCKMDFKIFWLNL 189
Query: 210 GCDYCDSIRGIGPKRAIELLYSFIDLCILLGCDYCDSI-RGIGPKRAIELIKEHRS---I 265
C+S + +E+L L + ++ K I I+
Sbjct: 190 K--NCNSPETV-----LEMLQ---KLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLK 239
Query: 266 EK-------ILENI---------D--------TKKYTVPE---GWLYKEARELFRHPEIA 298
K +L N+ + T+ V + +
Sbjct: 240 SKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLT 299
Query: 299 DPETIELVADVAPSSIRE-SRKICIDASMSLYQFLIAVR-SEG----NQLMSVDGEPTSH 352
E L+ ++ R++ L +IA +G + V+ + +
Sbjct: 300 PDEVKSLLLKYLDCRPQDLPREVLTTNPRRLS--IIAESIRDGLATWDNWKHVNCDKLTT 357
Query: 353 LMGTFYRTIRLVEHGLKPIY----VFDGKPPTLKSGELNKRMEKREDAQ---KALAKAQE 405
++ + + E + ++ VF A L+
Sbjct: 358 IIESSLNVLEPAE--YRKMFDRLSVF------------------PPSAHIPTILLS---- 393
Query: 406 QGKLKWSDPDE-------DGLVKYLCGDKNFAEDRIR 435
L W D + + L KY +K E I
Sbjct: 394 ---LIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTIS 427
>2dtg_E Insulin receptor; IR ectodomain, X-RAY crystallography, hormone
receptor/immune system complex; 3.80A {Homo sapiens}
SCOP: b.1.2.1 b.1.2.1 b.1.2.1 c.10.2.5 c.10.2.5 g.3.9.1
PDB: 3loh_E
Length = 897
Score = 39.1 bits (90), Expect = 0.004
Identities = 7/55 (12%), Positives = 10/55 (18%)
Query: 473 CQYQCQYQCQYQCQCQCQCQCQCQCQCQYQYQYQYQYQYQYQYQYQCQCQCQCQC 527
Q +C CQ + C +C C
Sbjct: 162 TAKGKTNCPATVINGQFVERCWTHSHCQKVCPTICKSHGCTAEGLCCHSECLGNC 216
Score = 37.6 bits (86), Expect = 0.010
Identities = 12/86 (13%), Positives = 20/86 (23%), Gaps = 20/86 (23%)
Query: 466 KSRCQYQCQYQCQYQCQYQCQCQCQCQCQCQC-------QCQ----YQYQ---------Y 505
S CQ C C+ C +C C +C +
Sbjct: 185 HSHCQKVCPTICKSHGCTAEGLCCHSECLGNCSQPDDPTKCVACRNFYLDGRCVETCPPP 244
Query: 506 QYQYQYQYQYQYQCQCQCQCQCQYQY 531
Y +Q + +C+
Sbjct: 245 YYHFQDWRCVNFSFCQDLHHKCKNSR 270
Score = 35.7 bits (81), Expect = 0.047
Identities = 8/61 (13%), Positives = 12/61 (19%), Gaps = 8/61 (13%)
Query: 467 SRCQYQCQYQCQYQCQYQCQCQCQCQCQCQCQCQYQYQYQYQYQYQYQYQYQCQCQCQCQ 526
Q +C CQ C + + C C +
Sbjct: 160 PGTAKGKTNCPATVINGQFVERCWTHSHCQKVCPTIC-------KSHGCTAEGLC-CHSE 211
Query: 527 C 527
C
Sbjct: 212 C 212
Score = 34.5 bits (78), Expect = 0.096
Identities = 8/56 (14%), Positives = 14/56 (25%), Gaps = 5/56 (8%)
Query: 476 QCQYQCQYQCQCQCQCQCQCQCQCQYQYQYQYQYQYQYQYQYQCQCQCQCQCQYQY 531
+C C + + C Q+ + CQ C C+
Sbjct: 150 DDNEECGDICPGTAKGKTNCPATVI-----NGQFVERCWTHSHCQKVCPTICKSHG 200
Score = 28.7 bits (63), Expect = 5.9
Identities = 7/59 (11%), Positives = 15/59 (25%), Gaps = 3/59 (5%)
Query: 476 QCQYQC---QYQCQCQCQCQCQCQCQCQYQYQYQYQYQYQYQYQYQCQCQCQCQCQYQY 531
+C C Y Q ++ + + + +C +C Y
Sbjct: 236 RCVETCPPPYYHFQDWRCVNFSFCQDLHHKCKNSRRQGCHQYVIHNNKCIPECPSGYTM 294
>1m6b_A C-ER, receptor protein-tyrosine kinase ERBB-3; cell surface
receptor, immunity, signaling transferase; HET: NAG NDG;
2.60A {Homo sapiens} SCOP: c.10.2.5 c.10.2.5 g.3.9.1
g.3.9.1 PDB: 3p11_A*
Length = 621
Score = 38.9 bits (89), Expect = 0.004
Identities = 8/62 (12%), Positives = 14/62 (22%)
Query: 467 SRCQYQCQYQCQYQCQYQCQCQCQCQCQCQCQCQYQYQYQYQYQYQYQYQYQCQCQCQCQ 526
+ + + C C+ +C CQ + Q QC
Sbjct: 153 AEIVVKDNGRSCPPCHEVCKGRCWGPGSEDCQTLTKTICAPQCNGHCFGPNPNQCCHDEC 212
Query: 527 CQ 528
Sbjct: 213 AG 214
Score = 36.6 bits (83), Expect = 0.022
Identities = 6/59 (10%), Positives = 7/59 (11%)
Query: 472 QCQYQCQYQCQYQCQCQCQCQCQCQCQCQYQYQYQYQYQYQYQYQYQCQCQCQCQCQYQ 530
C +C Y Q C C
Sbjct: 235 ACVPRCPQPLVYNKLTFQLEPNPHTKYQYGGVCVASCPHNFVVDQTSCVRACPPDKMEV 293
Score = 36.2 bits (82), Expect = 0.025
Identities = 7/60 (11%), Positives = 13/60 (21%)
Query: 469 CQYQCQYQCQYQCQYQCQCQCQCQCQCQCQCQYQYQYQYQYQYQYQYQYQCQCQCQCQCQ 528
+ + + C C+ +C Q + Q QC
Sbjct: 151 RDAEIVVKDNGRSCPPCHEVCKGRCWGPGSEDCQTLTKTICAPQCNGHCFGPNPNQCCHD 210
Score = 36.2 bits (82), Expect = 0.031
Identities = 7/68 (10%), Positives = 13/68 (19%), Gaps = 1/68 (1%)
Query: 464 KRKSRCQYQCQYQCQYQCQYQCQCQCQCQCQCQCQCQYQYQYQYQYQYQYQYQYQCQCQC 523
+ + + ++ + C C C Q Y C C
Sbjct: 456 RGPTEERLDIKHNRPRRDCVAEGKVCDPLCSSGG-CWGPGPGQCLSCRNYSRGGVCVTHC 514
Query: 524 QCQCQYQY 531
Sbjct: 515 NFLNGEPR 522
Score = 33.9 bits (76), Expect = 0.13
Identities = 9/63 (14%), Positives = 15/63 (23%), Gaps = 1/63 (1%)
Query: 469 CQYQCQYQCQYQCQYQCQ-CQCQCQCQCQCQCQYQYQYQYQYQYQYQYQYQCQCQCQCQC 527
+ + C C C+ +C Q + Q C QC
Sbjct: 148 VRDRDAEIVVKDNGRSCPPCHEVCKGRCWGPGSEDCQTLTKTICAPQCNGHCFGPNPNQC 207
Query: 528 QYQ 530
+
Sbjct: 208 CHD 210
Score = 33.9 bits (76), Expect = 0.15
Identities = 8/59 (13%), Positives = 11/59 (18%), Gaps = 1/59 (1%)
Query: 468 RCQYQCQYQCQYQCQYQCQCQCQCQCQCQCQCQYQYQYQYQYQYQYQYQYQCQCQCQCQ 526
C C C+ +C CQ + Q Q
Sbjct: 159 DNGRSCPP-CHEVCKGRCWGPGSEDCQTLTKTICAPQCNGHCFGPNPNQCCHDECAGGC 216
Score = 33.1 bits (74), Expect = 0.24
Identities = 9/75 (12%), Positives = 12/75 (16%), Gaps = 15/75 (20%)
Query: 468 RCQYQCQYQCQYQCQYQCQCQCQCQCQCQCQCQ---------------YQYQYQYQYQYQ 512
CQ + C QC C QC + +
Sbjct: 182 DCQTLTKTICAPQCNGHCFGPNPNQCCHDECAGGCSGPQDTDCFACRHFNDSGACVPRCP 241
Query: 513 YQYQYQCQCQCQCQC 527
Y
Sbjct: 242 QPLVYNKLTFQLEPN 256
Score = 32.3 bits (72), Expect = 0.45
Identities = 7/62 (11%), Positives = 13/62 (20%)
Query: 467 SRCQYQCQYQCQYQCQYQCQCQCQCQCQCQCQCQYQYQYQYQYQYQYQYQYQCQCQCQCQ 526
+ + + C C+ +C Q + Q C
Sbjct: 145 RDIVRDRDAEIVVKDNGRSCPPCHEVCKGRCWGPGSEDCQTLTKTICAPQCNGHCFGPNP 204
Query: 527 CQ 528
Q
Sbjct: 205 NQ 206
Score = 31.9 bits (71), Expect = 0.59
Identities = 11/65 (16%), Positives = 15/65 (23%)
Query: 463 EKRKSRCQYQCQYQCQYQCQYQCQCQCQCQCQCQCQCQYQYQYQYQYQYQYQYQYQCQCQ 522
K R C C+ +C CQ + C Q Q +
Sbjct: 157 VKDNGRSCPPCHEVCKGRCWGPGSEDCQTLTKTICAPQCNGHCFGPNPNQCCHDECAGGC 216
Query: 523 CQCQC 527
Q
Sbjct: 217 SGPQD 221
Score = 31.6 bits (70), Expect = 0.70
Identities = 8/69 (11%), Positives = 14/69 (20%), Gaps = 6/69 (8%)
Query: 466 KSRCQYQCQYQCQYQCQYQCQCQCQCQCQCQCQCQYQYQYQYQYQ------YQYQYQYQC 519
C QC Y C C ++ ++ + + C
Sbjct: 487 SGGCWGPGPGQCLSCRNYSRGGVCVTHCNFLNGEPREFAHEAECFSCHPECQPMEGTATC 546
Query: 520 QCQCQCQCQ 528
C
Sbjct: 547 NGSGSDTCA 555
Score = 30.8 bits (68), Expect = 1.5
Identities = 9/64 (14%), Positives = 13/64 (20%), Gaps = 1/64 (1%)
Query: 465 RKSRCQYQCQYQCQYQCQYQCQCQCQCQCQCQCQCQYQYQYQYQYQYQYQYQYQCQCQCQ 524
R R C C C QC Y + + +
Sbjct: 469 RPRRDCVAEGKVCDPLCSSGG-CWGPGPGQCLSCRNYSRGGVCVTHCNFLNGEPREFAHE 527
Query: 525 CQCQ 528
+C
Sbjct: 528 AECF 531
Score = 30.4 bits (67), Expect = 1.9
Identities = 7/65 (10%), Positives = 10/65 (15%), Gaps = 8/65 (12%)
Query: 468 RCQYQCQYQCQYQCQYQCQCQCQCQCQ-CQCQCQYQYQYQYQYQYQYQYQYQCQCQCQCQ 526
C +C Y C + + Q C C
Sbjct: 235 ACVPRCPQPLVYNKLTFQLEPNPHTKYQYGGVCVASCPHNF-------VVDQTSCVRACP 287
Query: 527 CQYQY 531
Sbjct: 288 PDKME 292
Score = 30.0 bits (66), Expect = 2.1
Identities = 11/75 (14%), Positives = 19/75 (25%), Gaps = 4/75 (5%)
Query: 461 REEKRKSRCQYQCQYQCQYQ-CQYQCQCQCQC--QCQCQCQCQYQYQYQYQYQYQYQYQY 517
R + C C C QC C + ++ ++
Sbjct: 469 RPRRDCVAEGKVCDPLCSSGGCWGPGPGQCLSCRNYSRGGVCVTHCNFLNGEPREFAHEA 528
Query: 518 QC-QCQCQCQCQYQY 531
+C C +CQ
Sbjct: 529 ECFSCHPECQPMEGT 543
Score = 29.6 bits (65), Expect = 3.1
Identities = 6/59 (10%), Positives = 12/59 (20%)
Query: 472 QCQYQCQYQCQYQCQCQCQCQCQCQCQCQYQYQYQYQYQYQYQYQYQCQCQCQCQCQYQ 530
+ + + C C+ + Q + QC C
Sbjct: 146 DIVRDRDAEIVVKDNGRSCPPCHEVCKGRCWGPGSEDCQTLTKTICAPQCNGHCFGPNP 204
>1x2i_A HEF helicase/nuclease; alpha helix, helix-hairpin-helix DNA binding
domain, homodimer, hydrolase; 1.45A {Pyrococcus
furiosus} SCOP: a.60.2.5
Length = 75
Score = 34.6 bits (80), Expect = 0.008
Identities = 10/50 (20%), Positives = 19/50 (38%), Gaps = 3/50 (6%)
Query: 215 DSIRGIGPKRAIELLYSFIDLCILLGCDYCD--SIRGIGPKRAIELIKEH 262
+ + + A LL F + + + + GIG K A + I+
Sbjct: 17 EGLPHVSATLARRLLKHFGSVERVFTASVAELMKVEGIGEKIA-KEIRRV 65
Score = 34.2 bits (79), Expect = 0.009
Identities = 5/26 (19%), Positives = 12/26 (46%)
Query: 142 DSIRGIGPKRAIELIKEHRSIEKILE 167
+ + + A L+K S+E++
Sbjct: 17 EGLPHVSATLARRLLKHFGSVERVFT 42
Score = 34.2 bits (79), Expect = 0.009
Identities = 5/26 (19%), Positives = 12/26 (46%)
Query: 245 DSIRGIGPKRAIELIKEHRSIEKILE 270
+ + + A L+K S+E++
Sbjct: 17 EGLPHVSATLARRLLKHFGSVERVFT 42
>3i2t_A Epidermal growth factor receptor, isoform A; EGFR, ectodomain,
unliganded, autoinhibited, ATP nucleotide-binding,
tyrosine-protein kinase; HET: NDG NAG BMA; 2.70A
{Drosophila melanogaster} PDB: 3ltf_A* 3ltg_A
Length = 551
Score = 37.7 bits (86), Expect = 0.008
Identities = 10/59 (16%), Positives = 17/59 (28%)
Query: 469 CQYQCQYQCQYQCQYQCQCQCQCQCQCQCQCQYQYQYQYQYQYQYQYQYQCQCQCQCQC 527
+ +C C + C + CQ + Q Y + + C C C
Sbjct: 160 APERECPKCHESCTHGCWGEGPKNCQKFSKLTCSPQCAGGRCYGPKPRECCHLFCAGGC 218
Score = 36.1 bits (82), Expect = 0.032
Identities = 8/67 (11%), Positives = 17/67 (25%), Gaps = 6/67 (8%)
Query: 470 QYQCQYQCQYQCQYQCQCQCQCQCQCQC-QCQYQYQ----YQYQYQYQYQYQYQCQCQCQ 524
+ + C C C Q C C+ + + + +
Sbjct: 200 RCYGPKPRE-CCHLFCAGGCTGPTQKDCIACKNFFDEGVCKEECPPMRKYNPTTYVLETN 258
Query: 525 CQCQYQY 531
+ +Y Y
Sbjct: 259 PEGKYAY 265
Score = 34.6 bits (78), Expect = 0.084
Identities = 13/66 (19%), Positives = 20/66 (30%)
Query: 463 EKRKSRCQYQCQYQCQYQCQYQCQCQCQCQCQCQCQCQYQYQYQYQYQYQYQYQYQCQCQ 522
E+ +C C + C + CQ + C QC Y + + C
Sbjct: 162 ERECPKCHESCTHGCWGEGPKNCQKFSKLTCSPQCAGGRCYGPKPRECCHLFCAGGCTGP 221
Query: 523 CQCQCQ 528
Q C
Sbjct: 222 TQKDCI 227
Score = 34.2 bits (77), Expect = 0.11
Identities = 8/66 (12%), Positives = 16/66 (24%), Gaps = 3/66 (4%)
Query: 468 RCQYQCQYQCQYQCQYQCQCQCQCQCQCQCQCQYQYQYQYQYQYQYQYQ---YQCQCQCQ 524
Y + + +C C C + Q + Q +C
Sbjct: 147 SNGTDAYYNYDFTAPERECPKCHESCTHGCWGEGPKNCQKFSKLTCSPQCAGGRCYGPKP 206
Query: 525 CQCQYQ 530
+C +
Sbjct: 207 RECCHL 212
Score = 32.7 bits (73), Expect = 0.29
Identities = 7/67 (10%), Positives = 14/67 (20%), Gaps = 1/67 (1%)
Query: 465 RKSRCQYQCQYQCQYQCQYQCQCQCQCQCQCQCQCQYQYQYQYQYQYQYQYQYQCQCQCQ 524
++ + + + C QC C Q + + C C
Sbjct: 456 KEPEQKVWVNENLRADLCEKNGTICSDQCNEDG-CWGAGTDQCLNCKNFNFNGTCIADCG 514
Query: 525 CQCQYQY 531
Sbjct: 515 YISNAYK 521
Score = 32.7 bits (73), Expect = 0.33
Identities = 5/55 (9%), Positives = 12/55 (21%)
Query: 470 QYQCQYQCQYQCQYQCQCQCQCQCQCQCQCQYQYQYQYQYQYQYQYQYQCQCQCQ 524
+ C+ +C +Y + + + C C
Sbjct: 235 EGVCKEECPPMRKYNPTTYVLETNPEGKYAYGATCVKECPGHLLRDNGACVRSCP 289
Score = 30.0 bits (66), Expect = 2.5
Identities = 11/66 (16%), Positives = 18/66 (27%), Gaps = 13/66 (19%)
Query: 469 CQYQCQYQCQYQCQYQC-QC---QCQCQCQCQCQCQYQYQYQYQYQYQYQYQYQCQCQCQ 524
C C C Q C C + C+ +C +Y Y + +
Sbjct: 210 CHLFCAGGCTGPTQKDCIACKNFFDEGVCKEECPPMRKYNPT---------TYVLETNPE 260
Query: 525 CQCQYQ 530
+ Y
Sbjct: 261 GKYAYG 266
Score = 28.8 bits (63), Expect = 5.2
Identities = 6/64 (9%), Positives = 12/64 (18%), Gaps = 8/64 (12%)
Query: 468 RCQYQCQYQCQYQCQYQCQCQCQCQCQCQC-QCQYQYQYQYQYQYQYQYQYQCQCQCQCQ 526
C+ +C +Y C + + + C C
Sbjct: 237 VCKEECPPMRKYNPTTYVLETNPEGKYAYGATC-------VKECPGHLLRDNGACVRSCP 289
Query: 527 CQYQ 530
Sbjct: 290 QDKM 293
Score = 28.0 bits (61), Expect = 8.7
Identities = 5/71 (7%), Positives = 13/71 (18%), Gaps = 6/71 (8%)
Query: 466 KSRCQYQCQYQCQYQCQYQCQCQCQCQC-----QCQCQCQYQYQYQYQYQYQYQYQYQCQ 520
+ + + +Y C +C C C + +
Sbjct: 250 PTTYVLETNPEGKYAYGATCVKECPGHLLRDNGACVRSCPQDK-MDKGGECVPCNGPCPK 308
Query: 521 CQCQCQCQYQY 531
+
Sbjct: 309 TCPGVTVLHAG 319
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 36.1 bits (82), Expect = 0.009
Identities = 10/44 (22%), Positives = 18/44 (40%), Gaps = 14/44 (31%)
Query: 261 EHRSIEKILENIDTKKYTVPEGWLYKEARELFRHPEIADPETIE 304
E ++++K L+ K Y + A P +A T+E
Sbjct: 18 EKQALKK-LQA-SLKLYA-DD-----SA------PALAIKATME 47
Score = 35.3 bits (80), Expect = 0.016
Identities = 10/44 (22%), Positives = 18/44 (40%), Gaps = 14/44 (31%)
Query: 158 EHRSIEKILENIDTKKYTVPEGWLYKEARELFRHPEVADPETIE 201
E ++++K L+ K Y + A P +A T+E
Sbjct: 18 EKQALKK-LQA-SLKLYA-DD-----SA------PALAIKATME 47
>1zlg_A Anosmin 1; insulin-like growth factor receptor Cys-rich fold, WHEY
acidic protein fold, fibronectin type III fold, hormone-
growth factor complex; NMR {Homo sapiens}
Length = 680
Score = 36.1 bits (82), Expect = 0.030
Identities = 14/88 (15%), Positives = 29/88 (32%), Gaps = 15/88 (17%)
Query: 458 TIRREEKRKSRCQYQC------QYQCQYQCQYQCQCQCQCQCQCQC-QCQYQYQYQYQYQ 510
++ +++RC +C + +Q CQ QC +C + +
Sbjct: 15 SLSAGSVQRARCASRCLSLQITRISAFFQHFQNNGSLVWCQNHKQCSKCLEPCKESGDLR 74
Query: 511 YQYQYQYQCQC-------QCQCQCQYQY 531
Q Q C+ +C C++
Sbjct: 75 KH-QCQSFCEPLFPKKSYECLTSCEFLK 101
Score = 28.0 bits (61), Expect = 9.9
Identities = 12/73 (16%), Positives = 21/73 (28%), Gaps = 14/73 (19%)
Query: 465 RKSRCQYQCQ-------YQCQYQCQYQCQCQCQCQCQCQCQCQYQYQYQYQYQYQYQYQY 517
RK +CQ C+ Y+C C++ Q C +
Sbjct: 74 RKHQCQSFCEPLFPKKSYECLTSCEFLKYILLVKQGDCPAPE-------KASGFAAACVE 126
Query: 518 QCQCQCQCQCQYQ 530
C+ +C +
Sbjct: 127 SCEVDNECSGVKK 139
>3k6s_B Integrin beta-2; cell receptor, adhesion molecule, cell adhesion,
pyrrolidone carboxylic acid; HET: NAG MAN; 3.50A {Homo
sapiens} PDB: 3k71_B* 3k72_B*
Length = 687
Score = 35.8 bits (82), Expect = 0.033
Identities = 15/70 (21%), Positives = 22/70 (31%), Gaps = 14/70 (20%)
Query: 467 SRCQYQCQYQCQYQCQYQCQ-------CQCQCQCQC-QCQCQYQYQYQYQYQYQYQYQYQ 518
C+ Q Q + + + C+ C C C QC C QY
Sbjct: 457 KNCECQTQGRSSQELEGSCRKDNNSIICSGLGDCVCGQCLCHTSDVPGKLIYGQY----- 511
Query: 519 CQCQ-CQCQC 527
C+C C+
Sbjct: 512 CECDTINCER 521
Score = 35.8 bits (82), Expect = 0.038
Identities = 18/123 (14%), Positives = 32/123 (26%), Gaps = 4/123 (3%)
Query: 410 KWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLK----ARSTTTQGRLDSFFTIRREEKR 465
K ++ V L D + I+N KL + ++ +
Sbjct: 310 KLTEIIPKSAVGELSEDSSNVVQLIKNAYNKLSSRVFLDHNALPDTLKVTYDSFCSNGVT 369
Query: 466 KSRCQYQCQYQCQYQCQYQCQCQCQCQCQCQCQCQYQYQYQYQYQYQYQYQYQCQCQCQC 525
Q Q + Q Q + Q QC+C+C+
Sbjct: 370 HRNQPRGDCDGVQINVPITFQVKVTATECIQEQSFVIRALGFTDIVTVQVLPQCECRCRD 429
Query: 526 QCQ 528
Q +
Sbjct: 430 QSR 432
Score = 35.1 bits (80), Expect = 0.060
Identities = 12/63 (19%), Positives = 20/63 (31%), Gaps = 1/63 (1%)
Query: 469 CQYQCQYQCQ-YQCQYQCQCQCQCQCQCQCQCQYQYQYQYQYQYQYQYQYQCQCQCQCQC 527
+ Q + C Q Q + Q Q + Q QC+C+C+
Sbjct: 370 HRNQPRGDCDGVQINVPITFQVKVTATECIQEQSFVIRALGFTDIVTVQVLPQCECRCRD 429
Query: 528 QYQ 530
Q +
Sbjct: 430 QSR 432
Score = 34.7 bits (79), Expect = 0.094
Identities = 14/86 (16%), Positives = 27/86 (31%), Gaps = 16/86 (18%)
Query: 458 TIRREEKRKSRCQYQCQYQCQYQCQYQCQCQCQCQCQC---------------QCQCQYQ 502
T + +S + Q QC+C+C+ Q C+C
Sbjct: 394 TATECIQEQSFVIRALGFTDIVTVQVLPQCECRCRDQSRDRSLCHGKGFLECGICRCDTG 453
Query: 503 YQYQY-QYQYQYQYQYQCQCQCQCQC 527
Y + + Q Q + + + C+
Sbjct: 454 YIGKNCECQTQGRSSQELEGSCRKDN 479
Score = 32.8 bits (74), Expect = 0.36
Identities = 12/68 (17%), Positives = 19/68 (27%), Gaps = 3/68 (4%)
Query: 467 SRCQ--YQCQYQCQYQCQ-YQCQCQCQCQCQCQCQCQYQYQYQYQYQYQYQYQYQCQCQC 523
S C + Q + C Q Q + Q Q + Q
Sbjct: 362 SFCSNGVTHRNQPRGDCDGVQINVPITFQVKVTATECIQEQSFVIRALGFTDIVTVQVLP 421
Query: 524 QCQCQYQY 531
QC+C+ +
Sbjct: 422 QCECRCRD 429
Score = 32.4 bits (73), Expect = 0.47
Identities = 13/65 (20%), Positives = 22/65 (33%), Gaps = 3/65 (4%)
Query: 467 SRCQY-QCQYQCQYQCQYQCQCQCQCQC-QCQCQCQYQYQY-QYQYQYQYQYQYQCQCQC 523
S CQ + C + +C + +C+C C+C YQ Q C
Sbjct: 549 SACQCERTTEGCLNPRRVECSGRGRCRCNVCECHSGYQLPLCQECPGCPSPCGKYISCAE 608
Query: 524 QCQCQ 528
+ +
Sbjct: 609 CLKFE 613
Score = 32.0 bits (72), Expect = 0.58
Identities = 8/59 (13%), Positives = 13/59 (22%), Gaps = 4/59 (6%)
Query: 467 SRCQYQCQYQCQYQCQYQCQCQCQCQCQCQCQCQYQYQYQYQYQYQYQYQYQCQCQCQC 525
C C C+ + C Y + Q +Y +C
Sbjct: 619 KNCSAACPGLQ---LSNNPVKGRTCKERDSEGCWVAYTLEQQDGMD-RYLIYVDESREC 673
Score = 30.8 bits (69), Expect = 1.4
Identities = 6/54 (11%), Positives = 11/54 (20%)
Query: 477 CQYQCQYQCQCQCQCQCQCQCQCQYQYQYQYQYQYQYQYQYQCQCQCQCQCQYQ 530
CQ C C + + + Q C+ +
Sbjct: 590 CQECPGCPSPCGKYISCAECLKFEKGPFGKNCSAACPGLQLSNNPVKGRTCKER 643
Score = 30.5 bits (68), Expect = 1.7
Identities = 10/64 (15%), Positives = 19/64 (29%), Gaps = 1/64 (1%)
Query: 468 RCQYQCQYQCQYQCQYQCQCQCQCQCQCQCQCQYQYQYQYQYQYQYQYQYQCQCQCQCQC 527
+ Q Q Q QC+ + + Q + + + +C C+C
Sbjct: 392 KVTATECIQEQSFVIRALGFTDIVTVQVLPQCECRCRDQSRDRSLCHGKGFLEC-GICRC 450
Query: 528 QYQY 531
Y
Sbjct: 451 DTGY 454
Score = 30.1 bits (67), Expect = 2.2
Identities = 8/57 (14%), Positives = 16/57 (28%)
Query: 471 YQCQYQCQYQCQYQCQCQCQCQCQCQCQCQYQYQYQYQYQYQYQYQYQCQCQCQCQC 527
Q +Q + Q Q + Q Q + + + Q + + C
Sbjct: 381 VQINVPITFQVKVTATECIQEQSFVIRALGFTDIVTVQVLPQCECRCRDQSRDRSLC 437
Score = 29.3 bits (65), Expect = 4.2
Identities = 11/78 (14%), Positives = 23/78 (29%), Gaps = 14/78 (17%)
Query: 450 QGRLDSFFTIRREEKRKSRCQYQCQYQCQYQCQYQCQCQCQCQCQCQCQCQYQYQYQYQY 509
Q + F ++ + Q + Q QC+C+C+ Q + +
Sbjct: 382 QINVPITFQVKVTATECIQEQSFVIRALGFTDIVTVQVLPQCECRCRDQSRDRSL----- 436
Query: 510 QYQYQYQYQCQCQCQCQC 527
C + +C
Sbjct: 437 ---------CHGKGFLEC 445
Score = 28.1 bits (62), Expect = 9.3
Identities = 10/64 (15%), Positives = 16/64 (25%), Gaps = 25/64 (39%)
Query: 471 YQCQYQCQYQCQYQCQCQCQCQCQCQCQCQYQYQYQYQYQYQYQYQYQCQCQ-------C 523
C+ C+ C + C C +C+C C
Sbjct: 510 QYCECDT-INCERYNGQVCGGPGRGLCFC-----------------GKCRCHPGFEGSAC 551
Query: 524 QCQC 527
QC+
Sbjct: 552 QCER 555
>2qz6_A Beta-lactamase; psychrophIle, cold adaptation, antibiotic
resistance, hydrolase, periplasm; 2.26A {Pseudomonas
fluorescens}
Length = 358
Score = 35.5 bits (82), Expect = 0.037
Identities = 12/37 (32%), Positives = 14/37 (37%), Gaps = 4/37 (10%)
Query: 399 ALAKAQEQGKLKWSDPDEDGLVKYLCGDKNFAEDRIR 435
A GKLK SDP +YL + D I
Sbjct: 69 LAGYALANGKLKLSDP----ASQYLPALRGDKFDHIS 101
>1yy9_A Epidermal growth factor receptor; cell surface receptor, tyrosine
kinase, glycoprotein, antigen:antibody complex, FAB
fragment, antitumor, drug; HET: NDG NAG BMA MAN; 2.60A
{Homo sapiens} SCOP: c.10.2.5 c.10.2.5 g.3.9.1 g.3.9.1
PDB: 3qwq_A* 1nql_A* 3b2v_A* 1ivo_A* 3njp_A*
Length = 624
Score = 35.8 bits (81), Expect = 0.039
Identities = 11/74 (14%), Positives = 20/74 (27%), Gaps = 4/74 (5%)
Query: 461 REEKRKSRCQYQCQYQCQYQC---QYQCQCQCQCQCQCQCQCQYQYQYQYQYQYQYQYQY 517
R E + C C + C +C + + ++
Sbjct: 470 RGENKCKATGQVCHALCSPEGCWGPEPRDCVSCRNVSRGRECVDKCKLLEGEPREFVENS 529
Query: 518 QC-QCQCQCQCQYQ 530
+C QC +C Q
Sbjct: 530 ECIQCHPECLPQAM 543
Score = 35.4 bits (80), Expect = 0.052
Identities = 12/72 (16%), Positives = 23/72 (31%), Gaps = 7/72 (9%)
Query: 467 SRCQYQCQYQCQYQCQYQCQCQCQCQ---CQCQCQCQYQYQYQYQYQ----YQYQYQYQC 519
+ CQ + C QC +C+ + C QC + +++ + C
Sbjct: 177 GAGEENCQKLTKIICAQQCSGRCRGKSPSDCCHNQCAAGCTGPRESDCLVCRKFRDEATC 236
Query: 520 QCQCQCQCQYQY 531
+ C Y
Sbjct: 237 KDTCPPLMLYNP 248
Score = 35.0 bits (79), Expect = 0.069
Identities = 13/84 (15%), Positives = 22/84 (26%), Gaps = 6/84 (7%)
Query: 452 RLDSFFTIRREEKRKSRCQYQCQYQCQYQCQYQCQCQCQC-QCQCQCQCQYQYQYQYQYQ 510
L + +I+ + S Q +C C C + Q +
Sbjct: 131 ALCNVESIQWRDIVSSDFLSNMSMDFQNHLGSCQKCDPSCPNGSCWGAGEENCQKLTKII 190
Query: 511 YQYQYQYQCQC-----QCQCQCQY 529
Q +C+ C QC
Sbjct: 191 CAQQCSGRCRGKSPSDCCHNQCAA 214
Score = 35.0 bits (79), Expect = 0.070
Identities = 6/64 (9%), Positives = 14/64 (21%), Gaps = 3/64 (4%)
Query: 471 YQCQYQCQYQC---QYQCQCQCQCQCQCQCQCQYQYQYQYQYQYQYQYQYQCQCQCQCQC 527
++ + C+ C Q + + + + Y C C
Sbjct: 230 FRDEATCKDTCPPLMLYNPTTYQMDVNPEGKYSFGATCVKKCPRNYVVTDHGSCVRACGA 289
Query: 528 QYQY 531
Sbjct: 290 DSYE 293
Score = 32.7 bits (73), Expect = 0.36
Identities = 8/60 (13%), Positives = 14/60 (23%), Gaps = 1/60 (1%)
Query: 472 QCQYQCQYQCQYQCQCQCQCQCQC-QCQCQYQYQYQYQYQYQYQYQYQCQCQCQCQCQYQ 530
Q +C C C + Q + QC +C+ +
Sbjct: 147 DFLSNMSMDFQNHLGSCQKCDPSCPNGSCWGAGEENCQKLTKIICAQQCSGRCRGKSPSD 206
Score = 32.7 bits (73), Expect = 0.38
Identities = 7/59 (11%), Positives = 14/59 (23%)
Query: 469 CQYQCQYQCQYQCQYQCQCQCQCQCQCQCQCQYQYQYQYQYQYQYQYQYQCQCQCQCQC 527
+Y C +C C C + + + + C+ C
Sbjct: 259 GKYSFGATCVKKCPRNYVVTDHGSCVRACGADSYEMEEDGVRKCKKCEGPCRKVCNGIG 317
Score = 31.9 bits (71), Expect = 0.59
Identities = 10/67 (14%), Positives = 15/67 (22%), Gaps = 1/67 (1%)
Query: 465 RKSRCQYQCQYQCQYQCQY-QCQCQCQCQCQCQCQCQYQYQYQYQYQYQYQYQYQCQCQC 523
RK R + C+ C Y Q + + + Y C C
Sbjct: 228 RKFRDEATCKDTCPPLMLYNPTTYQMDVNPEGKYSFGATCVKKCPRNYVVTDHGSCVRAC 287
Query: 524 QCQCQYQ 530
Sbjct: 288 GADSYEM 294
Score = 31.5 bits (70), Expect = 0.70
Identities = 14/77 (18%), Positives = 21/77 (27%), Gaps = 12/77 (15%)
Query: 466 KSRCQYQCQYQCQYQCQYQCQCQCQCQCQC------QCQ-CQYQYQYQYQYQY----QYQ 514
K C QC +C+ + C C QC C C C+
Sbjct: 188 KIICAQQCSGRCRGKSPSDC-CHNQCAAGCTGPRESDCLVCRKFRDEATCKDTCPPLMLY 246
Query: 515 YQYQCQCQCQCQCQYQY 531
Q + +Y +
Sbjct: 247 NPTTYQMDVNPEGKYSF 263
Score = 30.4 bits (67), Expect = 1.8
Identities = 6/63 (9%), Positives = 14/63 (22%), Gaps = 4/63 (6%)
Query: 472 QCQYQCQYQCQYQCQCQCQCQCQCQCQCQY---QYQYQYQYQYQYQYQYQCQCQCQCQCQ 528
Q + + +C+ C C + +C +C+
Sbjct: 462 QKTKIISNRGENKCKATG-QVCHALCSPEGCWGPEPRDCVSCRNVSRGRECVDKCKLLEG 520
Query: 529 YQY 531
Sbjct: 521 EPR 523
Score = 29.6 bits (65), Expect = 2.9
Identities = 8/59 (13%), Positives = 14/59 (23%), Gaps = 1/59 (1%)
Query: 466 KSRCQYQCQYQCQYQCQYQCQCQCQCQCQCQC-QCQYQYQYQYQYQYQYQYQYQCQCQC 523
+ + + + QC +C Q C + Y C C
Sbjct: 513 DKCKLLEGEPREFVENSECIQCHPECLPQAMNITCTGRGPDNCIQCAHYIDGPHCVKTC 571
>3rju_A Beta-lactamase/D-alanine carboxypeptidase; structural genomics,
center for structural genomics of infec diseases, csgid,
alpha-beta sandwich; HET: MSE CIT; 1.50A {Yersinia
pestis} PDB: 3ozh_A*
Length = 351
Score = 35.1 bits (81), Expect = 0.045
Identities = 8/25 (32%), Positives = 12/25 (48%), Gaps = 4/25 (16%)
Query: 399 ALAKAQEQGKLKWSDPDEDGLVKYL 423
+ K + G +K +DP L KY
Sbjct: 71 IMVKLADDGIVKLTDP----LKKYA 91
>1zkj_A CMY-10, extended-spectrum beta-lactamase; plasmid, class C,
hydrolase; 1.55A {Enterobacter aerogenes}
Length = 359
Score = 35.1 bits (81), Expect = 0.051
Identities = 8/37 (21%), Positives = 13/37 (35%), Gaps = 4/37 (10%)
Query: 399 ALAKAQEQGKLKWSDPDEDGLVKYLCGDKNFAEDRIR 435
A A +G ++ D ++ K A D I
Sbjct: 74 LGAYAVVKGAMQLDDK----ASRHAPWLKGSAFDSIT 106
>2wzx_A Beta-lactamase; inhibitor, hydrolase, antibiotic resistance; HET:
ZX0; 1.40A {Pseudomonas aeruginosa} PDB: 2wzz_A* 3s1y_A*
3s22_A*
Length = 371
Score = 35.1 bits (81), Expect = 0.054
Identities = 6/37 (16%), Positives = 11/37 (29%), Gaps = 4/37 (10%)
Query: 399 ALAKAQEQGKLKWSDPDEDGLVKYLCGDKNFAEDRIR 435
A Q K++ D ++ + D I
Sbjct: 73 LAGYALTQDKMRLDDR----ASQHWPALQGSRFDGIS 105
>2qts_A Acid-sensing ION channel; trimer, membrane protein; HET: MAL NAG;
1.90A {Gallus gallus} PDB: 3hgc_A 3ij4_A
Length = 438
Score = 34.7 bits (78), Expect = 0.062
Identities = 10/78 (12%), Positives = 16/78 (20%), Gaps = 5/78 (6%)
Query: 456 FFTIRREEKRKSRCQYQCQYQCQYQCQYQCQCQC----QCQCQCQCQCQYQYQYQYQYQY 511
T E + C+ C C C C + +
Sbjct: 267 KATTGDSEFYDTYSITACRIDC-ETRYLVENCNCRMVHMPGDAPYCTPEQYKECADPALD 325
Query: 512 QYQYQYQCQCQCQCQCQY 529
+ C C+ C
Sbjct: 326 FLVEKDNEYCVCEMPCNV 343
>1n8y_C Protooncoprotein; tyrosin kinase receptor, cell surface receptor,
transferase; HET: NAG; 2.40A {Rattus norvegicus} SCOP:
c.10.2.5 c.10.2.5 g.3.9.1 g.3.9.1 PDB: 1n8z_C* 3be1_A*
1s78_A* 3mzw_A* 3n85_A* 2a91_A* 3h3b_A
Length = 608
Score = 35.0 bits (79), Expect = 0.069
Identities = 7/64 (10%), Positives = 13/64 (20%), Gaps = 3/64 (4%)
Query: 471 YQCQYQCQYQC---QYQCQCQCQCQCQCQCQCQYQYQYQYQYQYQYQYQYQCQCQCQCQC 527
+ C+ C + + + + Y Y C C
Sbjct: 237 FNHSGICELHCPALVTYNTDTFESMHNPEGRYTFGASCVTTCPYNYLSTEVGSCTLVCPP 296
Query: 528 QYQY 531
Q
Sbjct: 297 NNQE 300
Score = 35.0 bits (79), Expect = 0.069
Identities = 6/70 (8%), Positives = 18/70 (25%)
Query: 458 TIRREEKRKSRCQYQCQYQCQYQCQYQCQCQCQCQCQCQCQCQYQYQYQYQYQYQYQYQY 517
T+ ++ ++ Q + + + C Q +
Sbjct: 458 TVPWDQLFRNPHQALLHSGNRPEEDCGLEGLVCNSLCAHGHCWGPGPTQCVNCSHFLRGQ 517
Query: 518 QCQCQCQCQC 527
+C +C+
Sbjct: 518 ECVEECRVWK 527
Score = 34.6 bits (78), Expect = 0.077
Identities = 8/68 (11%), Positives = 12/68 (17%), Gaps = 1/68 (1%)
Query: 465 RKSRCQYQCQYQCQYQCQYQC-QCQCQCQCQCQCQCQYQYQYQYQYQYQYQYQYQCQCQC 523
C+ C Y + + + Y Y C C
Sbjct: 235 LHFNHSGICELHCPALVTYNTDTFESMHNPEGRYTFGASCVTTCPYNYLSTEVGSCTLVC 294
Query: 524 QCQCQYQY 531
Q
Sbjct: 295 PPNNQEVT 302
Score = 32.3 bits (72), Expect = 0.41
Identities = 8/70 (11%), Positives = 14/70 (20%), Gaps = 5/70 (7%)
Query: 467 SRCQYQCQYQCQYQCQYQCQCQCQCQCQCQCQCQYQYQYQYQ-----YQYQYQYQYQCQC 521
S C C QC C C + + +
Sbjct: 201 SGCARCKGRLPTDCCHEQCAAGCTGPKHSDCLACLHFNHSGICELHCPALVTYNTDTFES 260
Query: 522 QCQCQCQYQY 531
+ +Y +
Sbjct: 261 MHNPEGRYTF 270
Score = 31.9 bits (71), Expect = 0.54
Identities = 8/62 (12%), Positives = 10/62 (16%), Gaps = 2/62 (3%)
Query: 466 KSRCQYQCQYQCQYQCQYQCQCQCQCQCQCQCQCQYQYQYQYQYQYQYQYQYQCQCQCQC 525
+ C C + CQ C QC
Sbjct: 164 DTNRSRACPPCAPACKDNHCWGESPEDCQILTGT--ICTSGCARCKGRLPTDCCHEQCAA 221
Query: 526 QC 527
C
Sbjct: 222 GC 223
Score = 30.4 bits (67), Expect = 1.7
Identities = 8/57 (14%), Positives = 10/57 (17%), Gaps = 2/57 (3%)
Query: 472 QCQYQCQYQCQYQCQCQCQCQCQCQCQCQYQYQYQYQYQYQYQYQYQCQCQCQCQCQ 528
C C+ C + CQ C QC
Sbjct: 166 NRSRACPPCAP-ACKDNH-CWGESPEDCQILTGTICTSGCARCKGRLPTDCCHEQCA 220
Score = 28.8 bits (63), Expect = 5.3
Identities = 6/100 (6%), Positives = 21/100 (21%), Gaps = 2/100 (2%)
Query: 433 RIRNGAKKLLKARSTTTQGRLDSFFTIRREEKRKSRCQYQCQYQCQYQCQYQCQCQCQCQ 492
+ +G + + + R + + + C +
Sbjct: 439 ELGSGLALIHRNAHLCFVHTVPWDQLFRNPHQALLHSGNRPEEDCGLEGLVCNSLCAHGH 498
Query: 493 CQCQ--CQCQYQYQYQYQYQYQYQYQYQCQCQCQCQCQYQ 530
C QC + + + + + +
Sbjct: 499 CWGPGPTQCVNCSHFLRGQECVEECRVWKGLPREYVSDKR 538
Score = 28.8 bits (63), Expect = 5.4
Identities = 6/71 (8%), Positives = 12/71 (16%), Gaps = 9/71 (12%)
Query: 470 QYQCQYQCQYQCQYQCQCQCQCQCQCQCQCQYQYQYQYQ---------YQYQYQYQYQCQ 520
+ + + C C Y + + Q
Sbjct: 251 VTYNTDTFESMHNPEGRYTFGASCVTTCPYNYLSTEVGSCTLVCPPNNQEVTAEDGTQRC 310
Query: 521 CQCQCQCQYQY 531
+C C
Sbjct: 311 EKCSKPCARVC 321
Score = 28.8 bits (63), Expect = 5.4
Identities = 9/60 (15%), Positives = 13/60 (21%), Gaps = 5/60 (8%)
Query: 467 SRCQYQCQYQCQYQCQYQCQCQCQCQCQCQCQCQYQYQYQYQYQYQYQYQYQCQCQCQCQ 526
+Y C C Y C C + + Q +C C
Sbjct: 264 PEGRYTFGASCVTTCPYNYLSTEVGSCTLVCPPNN-----QEVTAEDGTQRCEKCSKPCA 318
>2nrt_A Uvrabc system protein C; UVRC, endonuclease, RNAse H, helix hairpin
helix, NER, hydrolase; 1.50A {Thermotoga maritima} PDB:
2nrv_A 2nrw_A 2nrx_A 2nrz_A
Length = 220
Score = 34.0 bits (79), Expect = 0.075
Identities = 11/26 (42%), Positives = 16/26 (61%)
Query: 142 DSIRGIGPKRAIELIKEHRSIEKILE 167
D++ GIGP R +LI+ S+E I
Sbjct: 171 DNVPGIGPIRKKKLIEHFGSLENIRS 196
Score = 34.0 bits (79), Expect = 0.075
Identities = 11/26 (42%), Positives = 16/26 (61%)
Query: 245 DSIRGIGPKRAIELIKEHRSIEKILE 270
D++ GIGP R +LI+ S+E I
Sbjct: 171 DNVPGIGPIRKKKLIEHFGSLENIRS 196
Score = 29.8 bits (68), Expect = 1.9
Identities = 14/59 (23%), Positives = 23/59 (38%), Gaps = 15/59 (25%)
Query: 215 DSIRGIGPKRAIELLYSFIDLCILLGCDYCDSIRGIGPKRA-IELIKEHRSIEKILENI 272
D++ GIGP R +L+ F S+ I + A +E I +I +
Sbjct: 171 DNVPGIGPIRKKKLIEHF------------GSLENI--RSASLEEIARVIGSTEIARRV 215
>3maj_A DNA processing chain A; MCSG, PSI-2, structural genomics, protein
structure initiati midwest center for structural
genomics; HET: DNA; 2.05A {Rhodopseudomonas palustris}
Length = 382
Score = 34.6 bits (80), Expect = 0.076
Identities = 16/75 (21%), Positives = 23/75 (30%), Gaps = 13/75 (17%)
Query: 124 LSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGWLYK 183
L+ + ID L+ +GP+ LI S LE +PE
Sbjct: 17 LTEAQRIDWMRLI------RAENVGPRTFRSLINHFGSARAALE-------RLPELARRG 63
Query: 184 EARELFRHPEVADPE 198
A R P +
Sbjct: 64 GAARAGRIPSEDEAR 78
Score = 33.0 bits (76), Expect = 0.20
Identities = 12/56 (21%), Positives = 16/56 (28%), Gaps = 7/56 (12%)
Query: 246 SIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGWLYKEARELFRHPEIADPE 301
+GP+ LI S LE +PE A R P +
Sbjct: 30 RAENVGPRTFRSLINHFGSARAALE-------RLPELARRGGAARAGRIPSEDEAR 78
>2ffy_A Beta-lactamase; AMPC, deacylation, transition state, boronic acid,
hydrolase; HET: SM3; 1.07A {Escherichia coli} SCOP:
e.3.1.1 PDB: 1pi5_A* 1pi4_A* 2hds_A* 1c3b_A* 1fco_A*
1ga9_A* 1iem_A* 1kds_A* 1kdw_A* 1ke0_A* 1ke3_A* 1iel_A
1kvm_A* 1l2s_A* 1ll5_A* 1ll9_A* 1llb_A* 1mxo_A* 1my8_A*
1xgi_A* ...
Length = 358
Score = 34.3 bits (79), Expect = 0.087
Identities = 8/25 (32%), Positives = 11/25 (44%), Gaps = 4/25 (16%)
Query: 399 ALAKAQEQGKLKWSDPDEDGLVKYL 423
A +G++K SDP KY
Sbjct: 70 LGGDAIARGEIKLSDP----TTKYW 90
>3fcs_B Integrin beta-3; beta propeller, rossmann fold, EGF domain, cell
adhesion, DI mutation, glycoprotein, HOST-virus
interaction, M phosphoprotein; HET: NAG MAN; 2.55A {Homo
sapiens} PDB: 3ije_B* 1jv2_B* 1l5g_B* 1m1x_B* 1u8c_B*
Length = 690
Score = 34.3 bits (78), Expect = 0.11
Identities = 4/64 (6%), Positives = 16/64 (25%), Gaps = 12/64 (18%)
Query: 469 CQYQCQYQCQYQCQYQCQCQCQCQCQC-QCQCQYQYQYQYQYQYQYQYQYQCQCQCQCQC 527
+ + + + C C+ + + + C + + C
Sbjct: 615 VECKKFDRGALHDENTCNRYCRDEIESVKELKDTGK-----------DAVNCTYKNEDDC 663
Query: 528 QYQY 531
++
Sbjct: 664 VVRF 667
Score = 33.9 bits (77), Expect = 0.16
Identities = 7/60 (11%), Positives = 19/60 (31%), Gaps = 6/60 (10%)
Query: 470 QYQCQYQCQYQCQ-YQCQCQ-----CQCQCQCQCQCQYQYQYQYQYQYQYQYQYQCQCQC 523
+ C C+ + + + C + + C ++QY + + +C
Sbjct: 628 ENTCNRYCRDEIESVKELKDTGKDAVNCTYKNEDDCVVRFQYYEDSSGKSILYVVEEPEC 687
Score = 32.0 bits (72), Expect = 0.51
Identities = 12/65 (18%), Positives = 17/65 (26%), Gaps = 15/65 (23%)
Query: 471 YQCQYQCQYQCQYQCQCQC-QCQCQ-------CQCQCQYQYQYQYQYQYQYQYQYQCQCQ 522
+ C C QC C C C C C + C +
Sbjct: 526 FSCVRYKGEMCSGHGQCSCGDCLCDSDWTGYYCNCTTRT-------DTCMSSNGLLCSGR 578
Query: 523 CQCQC 527
+C+C
Sbjct: 579 GKCEC 583
Score = 30.8 bits (69), Expect = 1.4
Identities = 9/62 (14%), Positives = 18/62 (29%), Gaps = 3/62 (4%)
Query: 468 RCQYQCQYQCQYQCQYQCQCQCQCQCQC---QCQCQYQYQYQYQYQYQYQYQYQCQCQCQ 524
+ + C CQ Q + C+C + + Y+ Q +C
Sbjct: 428 QVTFDCDCACQAQAEPNSHRCNNGNGTFECGVCRCGPGWLGSQCECSEEDYRPSQQDECS 487
Query: 525 CQ 526
+
Sbjct: 488 PR 489
Score = 29.3 bits (65), Expect = 3.5
Identities = 11/79 (13%), Positives = 23/79 (29%), Gaps = 8/79 (10%)
Query: 458 TIRREEKRKSRCQYQCQYQCQYQCQYQCQCQCQCQCQCQCQCQYQYQYQYQYQYQYQYQY 517
+ + + + ++ Q C C CQ Q + ++
Sbjct: 400 EAKVRGCPQEKEKSFTIKPVGFKDSLIVQVTFDCDCACQAQAEPNSHRCNNGNGTFE-CG 458
Query: 518 QCQC-------QCQCQCQY 529
C+C QC+C +
Sbjct: 459 VCRCGPGWLGSQCECSEED 477
Score = 28.5 bits (63), Expect = 6.7
Identities = 7/53 (13%), Positives = 18/53 (33%)
Query: 476 QCQYQCQYQCQCQCQCQCQCQCQCQYQYQYQYQYQYQYQYQYQCQCQCQCQCQ 528
+ + + + + Q + + ++ Q + C C CQ Q +
Sbjct: 390 KIGDTVSFSIEAKVRGCPQEKEKSFTIKPVGFKDSLIVQVTFDCDCACQAQAE 442
Score = 28.1 bits (62), Expect = 9.6
Identities = 12/70 (17%), Positives = 20/70 (28%), Gaps = 9/70 (12%)
Query: 467 SRCQYQCQYQCQYQCQYQCQCQ-CQCQCQC-------QCQCQYQYQYQYQYQYQYQYQYQ 518
S+C+ + Q +C + Q C QC C + +Y +
Sbjct: 469 SQCECSEEDYRP-SQQDECSPREGQPVCSQRGECLCGQCVCHSSDFGKITGKYCECDDFS 527
Query: 519 CQCQCQCQCQ 528
C C
Sbjct: 528 CVRYKGEMCS 537
>3c65_A Uvrabc system protein C; UVRC, endonuclease, nucleotide excision
repair, DNA repair, RNAse H, cytoplasm, DNA damage, DNA
excision; 1.90A {Bacillus stearothermophilus}
Length = 226
Score = 33.6 bits (78), Expect = 0.11
Identities = 9/24 (37%), Positives = 14/24 (58%)
Query: 142 DSIRGIGPKRAIELIKEHRSIEKI 165
D I G+G KR L+ S++K+
Sbjct: 176 DDIPGVGEKRKKALLNYFGSVKKM 199
Score = 33.6 bits (78), Expect = 0.11
Identities = 9/24 (37%), Positives = 14/24 (58%)
Query: 245 DSIRGIGPKRAIELIKEHRSIEKI 268
D I G+G KR L+ S++K+
Sbjct: 176 DDIPGVGEKRKKALLNYFGSVKKM 199
Score = 30.2 bits (69), Expect = 1.3
Identities = 14/58 (24%), Positives = 18/58 (31%), Gaps = 20/58 (34%)
Query: 215 DSIRGIGPKRAIELLYSFIDLCILLGCDYCDSIR----------GIGPKRAIELIKEH 262
D I G+G KR LL F + ++ I A E I E
Sbjct: 176 DDIPGVGEKRKKALLNYFGSV---------KKMKEATVEELQRANIPRAVA-EKIYEK 223
>1haq_A Complement factor H; immunology, glycoprotein, complement alternate
pathway, SCR, CCP; NMR {Homo sapiens} PDB: 3gau_A 3gav_A
3gaw_A 2qfh_A 2qfg_A 1hfh_A 2kms_A 1hfi_A 1hcc_A
Length = 1213
Score = 34.3 bits (78), Expect = 0.13
Identities = 8/74 (10%), Positives = 21/74 (28%), Gaps = 10/74 (13%)
Query: 467 SRCQYQCQ--YQCQYQCQYQCQ--------CQCQCQCQCQCQCQYQYQYQYQYQYQYQYQ 516
++ C+ + QC C+ Q Q + + + +Y
Sbjct: 573 EVLKFSCKPGFTIVGPNSVQCYHFGLSPDLPICKEQVQSCGPPPELLNGNVKEKTKEEYG 632
Query: 517 YQCQCQCQCQCQYQ 530
+ + C ++
Sbjct: 633 HSEVVEYYCNPRFL 646
Score = 28.6 bits (63), Expect = 7.3
Identities = 12/70 (17%), Positives = 18/70 (25%), Gaps = 9/70 (12%)
Query: 466 KSRCQYQCQ--YQCQYQCQYQCQ-------CQCQCQCQCQCQCQYQYQYQYQYQYQYQYQ 516
R +YQC+ Y+ + C QC+ Y
Sbjct: 1052 GERVRYQCRSPYEMFGDEEVMCLNGNWTEPPQCKDSTGKCGPPPPIDNGDITSFPLSVYA 1111
Query: 517 YQCQCQCQCQ 526
+ QCQ
Sbjct: 1112 PASSVEYQCQ 1121
Score = 28.2 bits (62), Expect = 8.9
Identities = 6/77 (7%), Positives = 22/77 (28%), Gaps = 12/77 (15%)
Query: 466 KSRCQYQCQ--YQCQYQCQYQC---------QCQCQCQCQCQCQCQYQYQYQYQYQYQYQ 514
++ C + C QC +C+ + + + +
Sbjct: 694 GDSVEFNCSESFTMIGHRSITCIHGVWTQLPQC-VAIDKLKKCKSSNLIILEEHLKNKKE 752
Query: 515 YQYQCQCQCQCQCQYQY 531
+ + + +C+ + +
Sbjct: 753 FDHNSNIRYRCRGKEGW 769
>3l4g_B Phenylalanyl-tRNA synthetase beta chain; aminoacylation,
tRNA-binding, DNA-binding domain, four-helix
acetylation, aminoacyl-tRNA synthetase; HET: PHE; 3.30A
{Homo sapiens}
Length = 589
Score = 33.9 bits (78), Expect = 0.14
Identities = 11/57 (19%), Positives = 21/57 (36%), Gaps = 6/57 (10%)
Query: 115 LEKVLEGMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDT 171
L + L G + EEF +LC G + + + KE +++ +
Sbjct: 11 LFQAL-GRTYTDEEFDELCFEFGLELDEITSEK-----EIISKEQGNVKAAGASDVV 61
>1z00_A DNA excision repair protein ERCC-1; helix-hairpin-helix, hydrolase;
HET: DNA; NMR {Homo sapiens} SCOP: a.60.2.5
Length = 89
Score = 31.0 bits (70), Expect = 0.19
Identities = 11/93 (11%), Positives = 32/93 (34%), Gaps = 15/93 (16%)
Query: 215 DSIRGIGPKRAIELLYSFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDT 274
D + + + + + +++ + + L+ S+E+++
Sbjct: 3 DLLMEKLEQDFVSRVTECLT-----------TVKSVNKTDSQTLLTTFGSLEQLI-AASR 50
Query: 275 KKYTVPEGWLYKEAREL---FRHPEIADPETIE 304
+ + G ++AR L P + P +E
Sbjct: 51 EDLALCPGLGPQKARRLFDVLHEPFLKVPGGLE 83
Score = 30.2 bits (68), Expect = 0.36
Identities = 10/63 (15%), Positives = 26/63 (41%), Gaps = 4/63 (6%)
Query: 142 DSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGWLYKEAREL---FRHPEVADPE 198
+++ + + L+ S+E+++ + + G ++AR L P + P
Sbjct: 22 TTVKSVNKTDSQTLLTTFGSLEQLI-AASREDLALCPGLGPQKARRLFDVLHEPFLKVPG 80
Query: 199 TIE 201
+E
Sbjct: 81 GLE 83
>2q7z_A Complement receptor type 1; SCR domain, blood group antigen,
complement pathway, glycoprotein, immune response, innate
immunity, membrane; NMR {Homo sapiens}
Length = 1931
Score = 33.6 bits (76), Expect = 0.19
Identities = 5/59 (8%), Positives = 14/59 (23%)
Query: 468 RCQYQCQYQCQYQCQYQCQCQCQCQCQCQCQCQYQYQYQYQYQYQYQYQYQCQCQCQCQ 526
RC + C+ Q+ + +++ +C+
Sbjct: 1328 RCTSDPHGNGVWSSPAPRCELSVRAGHCKTPEQFPFASPTIPINDFEFPVGTSLNYECR 1386
Score = 30.5 bits (68), Expect = 2.0
Identities = 7/75 (9%), Positives = 13/75 (17%), Gaps = 12/75 (16%)
Query: 467 SRCQYQCQ--YQCQYQCQYQCQCQ----------CQCQCQCQCQCQYQYQYQYQYQYQYQ 514
S Y C ++ C C+ + +
Sbjct: 1437 STVNYSCNEGFRLIGSPSTTCLVSGNNVTWDKKAPICEIISCEPPPTISNGDFYSNNRTS 1496
Query: 515 YQYQCQCQCQCQCQY 529
+ QC
Sbjct: 1497 FHNGTVVTYQCHTGP 1511
Score = 29.0 bits (64), Expect = 4.8
Identities = 8/84 (9%), Positives = 19/84 (22%), Gaps = 19/84 (22%)
Query: 467 SRCQYQCQYQCQ----YQCQYQCQCQC---------------QCQCQCQCQCQYQYQYQY 507
Y C + + +C +C CQ + +
Sbjct: 853 KAVNYTCDPHPDRGTSFDLIGESTIRCTSDPQGNGVWSSPAPRCGILGHCQAPDHFLFAK 912
Query: 508 QYQYQYQYQYQCQCQCQCQCQYQY 531
+ + +C+ +Y
Sbjct: 913 LKTQTNASDFPIGTSLKYECRPEY 936
Score = 29.0 bits (64), Expect = 5.3
Identities = 9/77 (11%), Positives = 16/77 (20%), Gaps = 12/77 (15%)
Query: 467 SRCQYQCQ--YQCQYQCQYQCQCQCQ----------CQCQCQCQCQYQYQYQYQYQYQYQ 514
SR Y C ++ +C CQ + +
Sbjct: 534 SRINYSCTTGHRLIGHSSAECILSGNAAHWSTKPPICQRIPCGLPPTIANGDFISTNREN 593
Query: 515 YQYQCQCQCQCQCQYQY 531
+ Y +C
Sbjct: 594 FHYGSVVTYRCNPGSGG 610
Score = 28.2 bits (62), Expect = 9.1
Identities = 7/82 (8%), Positives = 18/82 (21%), Gaps = 18/82 (21%)
Query: 467 SRCQYQCQ--YQCQYQCQYQCQCQCQ---------CQCQCQCQC-------QYQYQYQYQ 508
++ + C ++ + + C Q C ++
Sbjct: 1692 AKVSFVCDEGFRLKGRSASHCVLAGMKALWNSSVPVCEQIFCPNPPAILNGRHTGTPFGD 1751
Query: 509 YQYQYQYQYQCQCQCQCQCQYQ 530
Y + Y C +
Sbjct: 1752 IPYGKEISYACDTHPDRGMTFN 1773
>3o3v_A Beta-lactamase, CLBP protein; alpha/beta, disulfide bridge,
hydrolase; 2.40A {Escherichia coli}
Length = 335
Score = 33.1 bits (76), Expect = 0.21
Identities = 5/25 (20%), Positives = 12/25 (48%), Gaps = 4/25 (16%)
Query: 399 ALAKAQEQGKLKWSDPDEDGLVKYL 423
+ ++G+L+ D ++ YL
Sbjct: 64 VVQILIQEGRLRQGDD----IITYL 84
>1mvh_A Cryptic LOCI regulator 4; lysine methyltransferase, CLR4,
SET-domain; 2.30A {Schizosaccharomyces pombe} SCOP:
b.85.7.1 PDB: 1mvx_A
Length = 299
Score = 32.9 bits (75), Expect = 0.24
Identities = 9/61 (14%), Positives = 16/61 (26%), Gaps = 11/61 (18%)
Query: 481 CQYQCQCQCQCQCQCQCQCQYQYQYQYQYQYQYQYQYQCQ-----------CQCQCQCQY 529
C C +C+C + Y Q + + C C +C
Sbjct: 69 CNCSSLGGCDLNNPSRCECLDDLDEPTHFAYDAQGRVRADTGAVIYECNSFCSCSMECPN 128
Query: 530 Q 530
+
Sbjct: 129 R 129
>3b0x_A DNA polymerase beta family (X family); structural genomics, riken
structural genomics/proteomics in RSGI, polxc, PHP, DRP
lyase; HET: DNA DGT; 1.36A {Thermus thermophilus} PDB:
3au2_A* 3au6_A* 3auo_A* 3b0y_A*
Length = 575
Score = 32.8 bits (74), Expect = 0.30
Identities = 29/184 (15%), Positives = 61/184 (33%), Gaps = 4/184 (2%)
Query: 114 HLEKVLEGMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEH--RSIEKILENIDT 171
+ + L ++ E + + G + G+GPK A L + S+EK+ +D
Sbjct: 68 KILEFLRTGKVRKHEELSRKVPRGVLEVMEVPGVGPKTARLLYEGLGIDSLEKLKAALDR 127
Query: 172 KKYTVPEGW-LYKEARELFRHPEVADPETIEFIDLCILLGCDYCDSIRGIGPKRAIELLY 230
T +G+ + R + + L ++IR + EL
Sbjct: 128 GDLTRLKGFGPKRAERIREGLALAQAAGKRRPLGAVLSLARSLLEAIRALPGVERAELCG 187
Query: 231 SFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGWLYKEARE 290
S +G D + +RA+E ++++ + + L + R
Sbjct: 188 SARRYKDTVG-DLDFLVASREGERAVEGFVRLPQVKEVYAKGKERATVFLKNGLQVDLRV 246
Query: 291 LFRH 294
+
Sbjct: 247 VPPE 250
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial
hypercholesterolemia, cholestero metabolism, lipid
transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens}
SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1
g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A
1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Length = 699
Score = 32.9 bits (74), Expect = 0.33
Identities = 10/61 (16%), Positives = 16/61 (26%), Gaps = 1/61 (1%)
Query: 471 YQCQYQCQYQCQYQCQCQCQCQCQ-CQCQCQYQYQYQYQYQYQYQYQYQCQCQCQCQCQY 529
+C C C +C C +Q Q + + + Q C C
Sbjct: 290 KECGTNECLDNNGGCSHVCNDLKIGYECLCPDGFQLVAQRRCEDIDECQDPDTCSQLCVN 349
Query: 530 Q 530
Sbjct: 350 L 350
Score = 30.2 bits (67), Expect = 1.9
Identities = 11/81 (13%), Positives = 22/81 (27%), Gaps = 9/81 (11%)
Query: 454 DSFFTIRREEKRKSRCQYQCQY-QCQYQCQYQCQCQCQCQ-------CQCQCQCQYQYQY 505
D ++QC C + + QC + C+ C C+ ++
Sbjct: 203 DKSDEENCAVATCRPDEFQCSDGNCIHGSR-QCDREYDCKDMSDEVGCVNVTLCEGPNKF 261
Query: 506 QYQYQYQYQYQYQCQCQCQCQ 526
+ C C+
Sbjct: 262 KCHSGECITLDKVCNMARDCR 282
Score = 29.8 bits (66), Expect = 2.4
Identities = 10/63 (15%), Positives = 16/63 (25%), Gaps = 1/63 (1%)
Query: 469 CQYQCQYQCQYQCQYQCQCQCQCQCQCQCQCQYQYQYQYQYQYQYQYQYQCQCQCQCQCQ 528
C C + C +C C +Q Q + + + Q C C
Sbjct: 292 CGTNECLDNNGGCSHVCNDLKIG-YECLCPDGFQLVAQRRCEDIDECQDPDTCSQLCVNL 350
Query: 529 YQY 531
Sbjct: 351 EGG 353
>1ntl_A CRRY-IG; immunology, complement, glycoprotein, SCR, CCP, immune
system; NMR {Mus musculus}
Length = 551
Score = 32.7 bits (74), Expect = 0.34
Identities = 4/75 (5%), Positives = 12/75 (16%), Gaps = 10/75 (13%)
Query: 466 KSRCQYQCQ----------YQCQYQCQYQCQCQCQCQCQCQCQCQYQYQYQYQYQYQYQY 515
+C+ QCQ + + + +
Sbjct: 282 GENVTLECEDGYTLEGSSQSQCQSDGSWNPLLAKCVSRLADPEVPRDCGCKPCICTVPEV 341
Query: 516 QYQCQCQCQCQCQYQ 530
+ +
Sbjct: 342 SSVFIFPPKPKDVLT 356
Score = 30.0 bits (67), Expect = 2.2
Identities = 6/66 (9%), Positives = 15/66 (22%), Gaps = 4/66 (6%)
Query: 467 SRCQYQCQYQCQYQCQYQCQCQ----CQCQCQCQCQCQYQYQYQYQYQYQYQYQYQCQCQ 522
S+CQ + C C+ + + + + +
Sbjct: 301 SQCQSDGSWNPLLAKCVSRLADPEVPRDCGCKPCICTVPEVSSVFIFPPKPKDVLTITLT 360
Query: 523 CQCQCQ 528
+ C
Sbjct: 361 PKVTCV 366
>2p28_B Integrin beta-2; hybrid domain, PSI domain, I-EGF DOM cell
adhesion; HET: NAG; 2.20A {Homo sapiens} PDB: 1l3y_A
Length = 217
Score = 31.5 bits (71), Expect = 0.47
Identities = 12/61 (19%), Positives = 25/61 (40%), Gaps = 6/61 (9%)
Query: 474 QYQCQYQCQYQCQCQCQC----QCQCQ-CQCQYQYQYQY-QYQYQYQYQYQCQCQCQCQC 527
QC+ +C+ Q + + C +C C+C Y + + Q Q + + + C+
Sbjct: 81 LPQCECRCRDQSRDRSLCHGKGFLECGICRCDTGYIGKNCECQTQGRSSQELEGSCRKDN 140
Query: 528 Q 528
Sbjct: 141 N 141
Score = 30.0 bits (67), Expect = 1.6
Identities = 13/71 (18%), Positives = 19/71 (26%), Gaps = 10/71 (14%)
Query: 467 SRCQYQCQYQCQYQCQYQCQCQC---------QCQC-QCQCQCQYQYQYQYQYQYQYQYQ 516
C+ Q Q + + + C+ C C QC C QY
Sbjct: 118 KNCECQTQGRSSQELEGSCRKDNNSIICSGLGDCVCGQCLCHTSDVPGKLIYGQYCECDT 177
Query: 517 YQCQCQCQCQC 527
C+ C
Sbjct: 178 INCERYNGQVC 188
Score = 28.4 bits (63), Expect = 5.0
Identities = 15/77 (19%), Positives = 27/77 (35%), Gaps = 16/77 (20%)
Query: 469 CQYQCQYQCQYQCQYQCQCQCQ-CQCQ-------CQCQCQYQYQYQYQYQYQYQYQY--- 517
C+ + Q + + C + +C C+C C+CQ Q + + + +
Sbjct: 86 CRCRDQSRDRSLCHGKGFLECGICRCDTGYIGKNCECQTQGRSSQELEGSCRKDNNSIIC 145
Query: 518 ----QCQC-QCQCQCQY 529
C C QC C
Sbjct: 146 SGLGDCVCGQCLCHTSD 162
>2zqe_A MUTS2 protein; alpha/beta, ATP-binding, DNA-binding,
nucleotide-binding, DN protein; 1.70A {Thermus
thermophilus}
Length = 83
Score = 29.4 bits (67), Expect = 0.55
Identities = 11/55 (20%), Positives = 24/55 (43%), Gaps = 4/55 (7%)
Query: 217 IRGIGPKRAIELLYSFIDLCILLGCDYCDSIRGIGP---KRAI-ELIKEHRSIEK 267
+RG+ A+ + ++ LG + G G ++AI E ++ + +E
Sbjct: 9 LRGLTVAEALLEVDQALEEARALGLSTLRLLHGKGTGALRQAIREALRRDKRVES 63
>2gy5_A Angiopoietin-1 receptor; ligand-binding domain, transferase; HET:
NAG NDG; 2.90A {Homo sapiens} PDB: 2gy7_B*
Length = 423
Score = 31.6 bits (71), Expect = 0.64
Identities = 11/70 (15%), Positives = 16/70 (22%), Gaps = 11/70 (15%)
Query: 472 QCQYQCQYQCQYQCQCQCQCQCQ----C----QCQCQYQYQYQY--QYQYQYQYQYQCQC 521
QC C Y C+ +C C C C C +Q +
Sbjct: 275 QCNEACH-PGFYGPDCKLRCSCNNGEMCDRFQGCLCSPGWQGLQCEREGIPRMTPKIVDL 333
Query: 522 QCQCQCQYQY 531
+
Sbjct: 334 PDHIEVNSGK 343
Score = 30.8 bits (69), Expect = 1.0
Identities = 12/63 (19%), Positives = 18/63 (28%), Gaps = 17/63 (26%)
Query: 472 QCQYQCQYQCQYQCQCQCQCQCQCQCQCQYQYQYQYQYQYQYQYQYQCQC-------QCQ 524
C+ C+ + C+ +C Q C+ Y C C QC
Sbjct: 228 TCEKACE-LHTFGRTCKERCSGQEGCKSYVFCL---------PDPYGCSCATGWKGLQCN 277
Query: 525 CQC 527
C
Sbjct: 278 EAC 280
Score = 30.4 bits (68), Expect = 1.6
Identities = 6/56 (10%), Positives = 13/56 (23%), Gaps = 2/56 (3%)
Query: 473 CQYQCQYQCQYQCQCQCQCQCQCQCQCQYQYQYQYQYQYQYQYQYQCQCQCQCQCQ 528
+ Q Q + + + + Q + +C C C
Sbjct: 153 EVHLPHAQPQDAGVYSARYIGGNLFTSAFTRLIVRRCEAQK-WGPECNHLCTA-CM 206
Score = 30.1 bits (67), Expect = 2.0
Identities = 2/36 (5%), Positives = 9/36 (25%), Gaps = 6/36 (16%)
Query: 468 RCQYQCQYQCQYQCQYQCQCQCQCQCQ---CQCQCQ 500
+C+ + + + + C+
Sbjct: 317 QCEREGIPRMTPKI---VDLPDHIEVNSGKFNPICK 349
Score = 30.1 bits (67), Expect = 2.1
Identities = 6/71 (8%), Positives = 13/71 (18%), Gaps = 7/71 (9%)
Query: 464 KRKSRCQYQCQYQCQYQCQYQCQCQCQCQCQCQCQCQYQYQYQYQYQYQYQYQYQCQ--- 520
+ + Q Q +Y + + +C+
Sbjct: 134 YKNGSFIHSVPRHEVPDILEVHLPHAQPQDAGVYSARYIGGNLFTSAFTRLIVRRCEAQK 193
Query: 521 ----CQCQCQC 527
C C
Sbjct: 194 WGPECNHLCTA 204
Score = 29.7 bits (66), Expect = 2.8
Identities = 3/53 (5%), Positives = 9/53 (16%), Gaps = 18/53 (33%)
Query: 472 QCQYQCQYQCQYQCQCQCQCQCQCQCQCQYQYQYQYQYQYQYQYQYQCQCQCQ 524
QC+ + + + + C+
Sbjct: 317 QCEREGIPRM---TPKIVDLPDHIEVNSGK---------------FNPICKAS 351
>2rjq_A Adamts-5; metalloprotease domain, aggrecanase, cleavage on PAIR of
BAS residues, extracellular matrix, glycoprotein,
hydrolase, ME binding; HET: NAG BAT; 2.60A {Homo
sapiens}
Length = 378
Score = 31.6 bits (71), Expect = 0.72
Identities = 9/64 (14%), Positives = 20/64 (31%)
Query: 468 RCQYQCQYQCQYQCQYQCQCQCQCQCQCQCQCQYQYQYQYQYQYQYQYQYQCQCQCQCQC 527
C + + + + Q +C + + +Y + + QC C
Sbjct: 267 VCLTKKLPAVEGTPCGKGRICLQGKCVDKTKKKYYSTSSHGNWGSWGSWGQCSRSCGGGV 326
Query: 528 QYQY 531
Q+ Y
Sbjct: 327 QFAY 330
Score = 30.0 bits (67), Expect = 1.8
Identities = 7/62 (11%), Positives = 18/62 (29%), Gaps = 3/62 (4%)
Query: 465 RKSRCQYQCQYQCQYQCQYQCQCQCQCQCQCQCQCQYQYQYQYQYQYQYQYQ---YQCQC 521
+ +C + + + + QC C Q+ Y++ + C
Sbjct: 288 LQGKCVDKTKKKYYSTSSHGNWGSWGSWGQCSRSCGGGVQFAYRHCNNPAPRNNGRYCTG 347
Query: 522 QC 523
+
Sbjct: 348 KR 349
>3vla_A EDGP; extracellular, inhibitor, plant protein; HET: NAG; 0.95A
{Daucus carota} PDB: 3vlb_A
Length = 413
Score = 31.0 bits (69), Expect = 0.93
Identities = 5/35 (14%), Positives = 7/35 (20%), Gaps = 1/35 (2%)
Query: 471 YQCQYQCQYQCQYQCQCQCQCQCQCQCQCQYQYQY 505
QC C C + C +
Sbjct: 67 SQCSLSGSIACG-DCFNGPRPGCNNNTCGVFPENP 100
Score = 28.3 bits (62), Expect = 7.2
Identities = 6/44 (13%), Positives = 9/44 (20%), Gaps = 1/44 (2%)
Query: 469 CQYQCQYQCQYQCQYQCQCQC-QCQCQCQCQCQYQYQYQYQYQY 511
Y+ QC C C + C +
Sbjct: 57 STYRPVRCRTSQCSLSGSIACGDCFNGPRPGCNNNTCGVFPENP 100
>2xkx_A Disks large homolog 4; structural protein, scaffold protein,
membrane associated GU kinase; 22.9A {Rattus norvegicus}
Length = 721
Score = 31.0 bits (69), Expect = 1.0
Identities = 13/44 (29%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
Query: 362 RLVEHGLKPIYVFDGKPPTLKSGELNKRMEKREDAQKALAKAQE 405
RL L PI +F +P +L++ + E A+KA +A +
Sbjct: 634 RLQAAHLHPIAIFI-RPRSLENVLEINKRITEEQARKAFDRATK 676
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 30.1 bits (67), Expect = 1.2
Identities = 11/67 (16%), Positives = 24/67 (35%), Gaps = 8/67 (11%)
Query: 385 ELNKRMEKR-EDAQKALAKAQEQGKLKWSDPDEDGLVKYLCG-DKNFAEDRIRNGAKKLL 442
E KR+++ ++ + +E+ K E+ + +KN +RI K
Sbjct: 93 EQRKRLQELDAASKVMEQEWREKAKKDL----EEWNQRQSEQVEKNKINNRIA--DKAFY 146
Query: 443 KARSTTT 449
+
Sbjct: 147 QQPDADI 153
>2qmi_A PBP related beta-lactamase; PAB87, octamer, LU-HPDO3A, archaea,
hydrolase; HET: DO3; 2.20A {Pyrococcus abyssi}
Length = 447
Score = 30.6 bits (69), Expect = 1.3
Identities = 8/36 (22%), Positives = 15/36 (41%), Gaps = 4/36 (11%)
Query: 399 ALAKAQEQGKLKWSDPDEDGLVKYLCGDKNFAEDRI 434
A+ K E+G L DP + K++ + +
Sbjct: 68 AIMKLVEEGGLSLDDP----VEKFVNIKLRPFGEPV 99
>2ygo_A WIF-1, WNT inhibitory factor 1; signaling protein, WNT signaling
pathway, WNT antagonist, MO cancer, glycosaminoglycan;
HET: MLY PCF NAG; 1.85A {Homo sapiens} PDB: 2ygp_A*
Length = 188
Score = 29.9 bits (66), Expect = 1.3
Identities = 8/83 (9%), Positives = 16/83 (19%), Gaps = 14/83 (16%)
Query: 463 EKRKSRCQYQCQYQCQYQCQYQCQCQCQCQCQCQCQCQY----QYQYQYQYQYQYQYQYQ 518
+ Q + C + Q ++ Q +
Sbjct: 91 PLLGTVPHXASVVQVGFPCLGXQDGVAAFEVDVIVMNSEGNTILXTPQNAIFFKTCQQAE 150
Query: 519 CQCQC----------QCQCQYQY 531
C C C+C +
Sbjct: 151 CPGGCRNGGFCNERRICECPDGF 173
>1t6e_X Xylanase inhibitor; two beta-barrel domain structure, hydrolase
inhibitor; 1.70A {Triticum aestivum} SCOP: b.50.1.2 PDB:
1t6g_A 2b42_A 3hd8_A
Length = 381
Score = 30.5 bits (68), Expect = 1.4
Identities = 5/50 (10%), Positives = 6/50 (12%), Gaps = 16/50 (32%)
Query: 472 QCQ--YQCQYQCQYQCQC--------------QCQCQCQCQCQCQYQYQY 505
C C C + Y Y
Sbjct: 38 TCDGGQPPAEIPCSSPTCLLANAYPAPGCPAPSCGSDKHDKPCTAYPYNP 87
>2a1j_B DNA excision repair protein ERCC-1; XPF, xeroderma pigmentosum, DNA
repair, endonuclease, helix-hairpin-helix, DNA binding
protein; HET: DNA; 2.70A {Homo sapiens} SCOP: a.60.2.5
Length = 91
Score = 28.6 bits (64), Expect = 1.4
Identities = 10/43 (23%), Positives = 20/43 (46%), Gaps = 2/43 (4%)
Query: 215 DSIRGIGPKRAIELLYSFIDLCILLGCDYCD--SIRGIGPKRA 255
+++ + + LL +F L L+ D G+GP++A
Sbjct: 35 TTVKSVNKTDSQTLLTTFGSLEQLIAASREDLALCPGLGPQKA 77
Score = 28.2 bits (63), Expect = 1.6
Identities = 3/26 (11%), Positives = 13/26 (50%)
Query: 142 DSIRGIGPKRAIELIKEHRSIEKILE 167
+++ + + L+ S+E+++
Sbjct: 35 TTVKSVNKTDSQTLLTTFGSLEQLIA 60
Score = 28.2 bits (63), Expect = 1.6
Identities = 3/26 (11%), Positives = 13/26 (50%)
Query: 245 DSIRGIGPKRAIELIKEHRSIEKILE 270
+++ + + L+ S+E+++
Sbjct: 35 TTVKSVNKTDSQTLLTTFGSLEQLIA 60
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex,
beta propeller, cholesterol clearance, PCSK
autocatalytic cleavage; 7.01A {Homo sapiens}
Length = 791
Score = 30.6 bits (68), Expect = 1.5
Identities = 10/66 (15%), Positives = 17/66 (25%), Gaps = 4/66 (6%)
Query: 469 CQYQCQYQ---CQYQCQYQCQCQCQCQCQCQCQCQYQ-YQYQYQYQYQYQYQYQCQCQCQ 524
C+ +C C C Y+ +Q Q +C+ +
Sbjct: 295 MARDCRDWSDEPIKECGTNECLDNNGGCSHVCNDLKIGYECLCPDGFQLVAQRRCEDIDE 354
Query: 525 CQCQYQ 530
CQ
Sbjct: 355 CQDPDT 360
Score = 29.8 bits (66), Expect = 2.9
Identities = 10/65 (15%), Positives = 20/65 (30%), Gaps = 9/65 (13%)
Query: 470 QYQCQY-QCQYQCQYQCQCQCQC-------QCQCQCQCQYQYQYQYQYQYQYQYQYQCQC 521
++QC C + + QC + C C C+ +++ C
Sbjct: 237 EFQCSDGNCIHGSR-QCDREYDCKDMSDEVGCVNVTLCEGPNKFKCHSGECITLDKVCNM 295
Query: 522 QCQCQ 526
C+
Sbjct: 296 ARDCR 300
Score = 28.3 bits (62), Expect = 7.3
Identities = 10/62 (16%), Positives = 15/62 (24%), Gaps = 1/62 (1%)
Query: 469 CQYQCQYQCQYQCQYQCQCQCQC-QCQCQCQCQYQYQYQYQYQYQYQYQYQCQCQCQCQC 527
C C + C +C C Q Q + + + Q C C
Sbjct: 310 CGTNECLDNNGGCSHVCNDLKIGYECLCPDGFQLVAQRRCEDIDECQDPDTCSQLCVNLE 369
Query: 528 QY 529
Sbjct: 370 GG 371
Score = 28.3 bits (62), Expect = 9.1
Identities = 9/60 (15%), Positives = 15/60 (25%), Gaps = 1/60 (1%)
Query: 469 CQYQCQYQCQYQCQYQCQCQCQCQCQCQCQCQYQYQYQYQYQYQYQYQYQCQCQCQCQCQ 528
+C C C +C +Q Q + + +CQ C
Sbjct: 306 PIKECGTNECLDNNGGCSHVCNDLKIG-YECLCPDGFQLVAQRRCEDIDECQDPDTCSQL 364
>3ojy_B Complement component C8 beta chain; macpf, lipocalin, immune
system; HET: TPO BMA; 2.51A {Homo sapiens}
Length = 537
Score = 30.2 bits (67), Expect = 2.0
Identities = 7/59 (11%), Positives = 15/59 (25%)
Query: 469 CQYQCQYQCQYQCQYQCQCQCQCQCQCQCQCQYQYQYQYQYQYQYQYQYQCQCQCQCQC 527
C+ Q + + Q + C C Q + + Q++
Sbjct: 62 CRSQVRCEGFVCAQTGRCVNRRLLCNGDNDCGDQSDEANCRRIYKKCQHEMDQYWGIGS 120
Score = 29.5 bits (65), Expect = 3.0
Identities = 6/63 (9%), Positives = 16/63 (25%)
Query: 464 KRKSRCQYQCQYQCQYQCQYQCQCQCQCQCQCQCQCQYQYQYQYQYQYQYQYQYQCQCQC 523
R++ Q ++Q + + CQ + + Y+
Sbjct: 431 VRQNMKQALEEFQKEVSSCHCAPCQGNGVPVLKGSRCDCICPVGSQGLACEVSYRKNTPI 490
Query: 524 QCQ 526
+
Sbjct: 491 DGK 493
Score = 28.7 bits (63), Expect = 5.8
Identities = 3/69 (4%), Positives = 9/69 (13%)
Query: 461 REEKRKSRCQYQCQYQCQYQCQYQCQCQCQCQCQCQCQCQYQYQYQYQYQYQYQYQYQCQ 520
+ + + + C C + Q
Sbjct: 419 LVTATDFAYSSTVRQNMKQALEEFQKEVSSCHCAPCQGNGVPVLKGSRCDCICPVGSQGL 478
Query: 521 CQCQCQCQY 529
+
Sbjct: 479 ACEVSYRKN 487
>2f5g_A Transposase, putative; dimer, stem-loop binding, gene regulation;
1.70A {Sulfolobus solfataricus} SCOP: d.58.57.1 PDB:
2f4f_A 2ec2_A
Length = 133
Score = 28.9 bits (63), Expect = 2.2
Identities = 6/66 (9%), Positives = 15/66 (22%)
Query: 462 EEKRKSRCQYQCQYQCQYQCQYQCQCQCQCQCQCQCQCQYQYQYQYQYQYQYQYQYQCQC 521
E K +Y C Y + +++ + + + +
Sbjct: 2 ELKSTRHTKYLCNYHFVWIPKHRRNTLVNEIAEYTKEVLKSIAEELGCEIIALEVMPDHI 61
Query: 522 QCQCQC 527
C
Sbjct: 62 HLFVNC 67
>2jjd_A Receptor-type tyrosine-protein phosphatase epsilo; transmembrane,
phosphoprotein, consorti structural, glycoprotein, SGC,
PTPRE, membrane genomics; 3.20A {Homo sapiens}
Length = 599
Score = 30.0 bits (68), Expect = 2.2
Identities = 6/69 (8%), Positives = 16/69 (23%), Gaps = 7/69 (10%)
Query: 465 RKSRC-------QYQCQYQCQYQCQYQCQCQCQCQCQCQCQCQYQYQYQYQYQYQYQYQY 517
R R QY YQ + + + + + + ++
Sbjct: 266 RNQRPQMVQTDMQYTFIYQALLEYYLYGDTELDVSSLEKHLQTMHGTTTHFDKIGLEEEF 325
Query: 518 QCQCQCQCQ 526
+ +
Sbjct: 326 RKLTNVRIM 334
>1kft_A UVRC, excinuclease ABC subunit C; helix-hairpin-helix, HHH domain,
DNA-binding domain, DNA binding protein; NMR
{Escherichia coli} SCOP: a.60.2.3
Length = 78
Score = 27.5 bits (62), Expect = 2.5
Identities = 8/24 (33%), Positives = 15/24 (62%)
Query: 142 DSIRGIGPKRAIELIKEHRSIEKI 165
++I G+GPKR L+K ++ +
Sbjct: 27 ETIEGVGPKRRQMLLKYMGGLQGL 50
Score = 27.5 bits (62), Expect = 2.5
Identities = 8/24 (33%), Positives = 15/24 (62%)
Query: 245 DSIRGIGPKRAIELIKEHRSIEKI 268
++I G+GPKR L+K ++ +
Sbjct: 27 ETIEGVGPKRRQMLLKYMGGLQGL 50
Score = 27.1 bits (61), Expect = 3.8
Identities = 8/18 (44%), Positives = 11/18 (61%)
Query: 215 DSIRGIGPKRAIELLYSF 232
++I G+GPKR LL
Sbjct: 27 ETIEGVGPKRRQMLLKYM 44
>1vq8_Y 50S ribosomal protein L32E; ribosome 50S, protein-protein complex,
RNA-RNA complex, PROT complex, peptidyl transferase
reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A
{Haloarcula marismortui} SCOP: c.9.2.1 PDB: 1vq4_Y*
1vq5_Y* 1vq6_Y* 1vq7_Y* 1s72_Y* 1vq9_Y* 1vqk_Y* 1vql_Y*
1vqm_Y* 1vqn_Y* 1vqo_Y* 1vqp_Y* 1yhq_Y* 1yi2_Y* 1yij_Y*
1yit_Y* 1yj9_Y* 1yjn_Y* 1yjw_Y* 2otj_Y* ...
Length = 241
Score = 29.5 bits (65), Expect = 2.5
Identities = 17/118 (14%), Positives = 39/118 (33%), Gaps = 5/118 (4%)
Query: 149 PKRAIELIKEHRSIEKILENIDTKKYTVPEGWLYKEARELFRHPEVADP---ETIEFIDL 205
++ +L E + + ++ + K +R P I+
Sbjct: 104 TEKTPDLSDEDARLLTQRHRVGKPQFNRQDHHKKKRVSTSWRKPRGQLSKQRRGIKGKGD 163
Query: 206 CILLGCDYCDSIRGIGPKRAIELL-YSFIDLCILLGCDYCDSI-RGIGPKRAIELIKE 261
+ G ++RG P E+ ++ DL + G I +G ++ + +E
Sbjct: 164 TVEAGFRSPTAVRGKHPSGFEEVRVHNVDDLEGVDGDTEAVRIASKVGARKRERIEEE 221
>3qxb_A Putative xylose isomerase; structural genomics, joint center for
structural genomics, J protein structure initiative,
PSI-biology; 1.90A {Rhodospirillum rubrum}
Length = 316
Score = 29.7 bits (66), Expect = 2.6
Identities = 11/105 (10%), Positives = 24/105 (22%), Gaps = 18/105 (17%)
Query: 223 KRAIELLYSFIDLCILLGCDYCDSIRGI-------GPKRAIELIKE-HRSIEKILENIDT 274
+ L ID+ + G P R E+ ++
Sbjct: 110 SLGYQHLKRAIDMTAAMEVPATGMPFGSYSAADALNPARREEIYAIARDMWIELAAYAKR 169
Query: 275 KKYTV----------PEGWLYKEARELFRHPEIADPETIELVADV 309
+ ++ +A L + + L+ D
Sbjct: 170 QGLSMLYVEPVPLATEFPSSAADAARLMADLDGRTEIPVRLLVDW 214
>2b5o_A FNR, ferredoxin--NADP reductase; complex with FAD, oxidoreductase;
HET: FAD; 2.50A {Synechococcus SP}
Length = 402
Score = 29.1 bits (65), Expect = 3.8
Identities = 10/61 (16%), Positives = 14/61 (22%), Gaps = 9/61 (14%)
Query: 381 LKSGELNKRMEK---REDAQKALAKA------QEQGKLKWSDPDEDGLVKYLCGDKNFAE 431
N R+ RE K E + + Y+CG K
Sbjct: 308 AAENPDNFRLTYAISREQKTADGGKVYVQSRVSEYADELFEMIQKPNTHVYMCGLKGMQP 367
Query: 432 D 432
Sbjct: 368 P 368
>1ihu_A Arsenical pump-driving ATPase; aluminum fluoride, ADP, ARSA ATPase,
ATP binding site, hydro; HET: ADP; 2.15A {Escherichia
coli} SCOP: c.37.1.10 c.37.1.10 PDB: 1f48_A* 1ii0_A*
1ii9_A*
Length = 589
Score = 29.1 bits (65), Expect = 3.8
Identities = 13/81 (16%), Positives = 26/81 (32%), Gaps = 19/81 (23%)
Query: 321 CIDASMSLYQFLIAVRSEGNQLMSVDGEPTSHLMGTFYRTIRLVEHGLKPIYVFDGKPPT 380
C + F +R G + + +D PT H T+ L++
Sbjct: 422 CTEEIAVFQAFSRVIREAGKRFVVMDTAPTGH-------TLLLLD------------ATG 462
Query: 381 LKSGELNKRMEKREDAQKALA 401
E+ K+M ++ +
Sbjct: 463 AYHREIAKKMGEKGHFTTPMM 483
>2gsx_A Complement receptor type 2; SCR domain, CCP domain, sushi domain,
immune system; NMR {Homo sapiens}
Length = 951
Score = 29.3 bits (65), Expect = 3.8
Identities = 7/74 (9%), Positives = 13/74 (17%), Gaps = 11/74 (14%)
Query: 467 SRCQYQCQ--YQCQYQCQYQCQCQ---------CQCQCQCQCQCQYQYQYQYQYQYQYQY 515
+ C Y+ Q +C C+ ++
Sbjct: 216 VTANFFCDEGYRLQGPPSSRCVIAGQGVAWTKMPVCEEIFCPSPPPILNGRHIGNSLANV 275
Query: 516 QYQCQCQCQCQCQY 529
Y C
Sbjct: 276 SYGSIVTYTCDPDP 289
>3e15_A Glucose-6-phosphate 1-dehydrogenase; 6-phosphogluconolactonase,
malaria, carbohydrate metabolism, glucose metabolism,
NADP, oxidoreductase,; HET: MSE; 2.00A {Plasmodium
vivax}
Length = 312
Score = 28.7 bits (64), Expect = 4.2
Identities = 16/74 (21%), Positives = 29/74 (39%), Gaps = 19/74 (25%)
Query: 182 YKEARELFRHPEVADPETIEFID--LCILLGC-DYCDSIRGIGPKRAIELLYSFIDLCIL 238
Y + LF ++ + E + D I+ DY + I+ + K Y+ +D+ IL
Sbjct: 111 YNNIKFLFESLKINEKEQLYRPDTSKNIVECVRDYNEKIKNMVKK------YTKVDIAIL 164
Query: 239 LGCDYCDSIRGIGP 252
G+G
Sbjct: 165 ----------GMGS 168
>3nxp_A Prethrombin-1; allostery, blood coagulation, hydro kringle, serine
protease, zymogen; HET: NAG; 2.20A {Homo sapiens}
Length = 424
Score = 29.1 bits (65), Expect = 4.3
Identities = 4/60 (6%), Positives = 11/60 (18%), Gaps = 1/60 (1%)
Query: 469 CQYQCQYQCQYQ-CQYQCQCQCQCQCQCQCQCQYQYQYQYQYQYQYQYQYQCQCQCQCQC 527
+ Q C+ + C + Y + + +
Sbjct: 51 QDFNSAVQLVENFCRNPDGDEEGVWCYVAGKPGDFGYCDLNYCEEAVEEETGDGLDEDSD 110
Score = 28.7 bits (64), Expect = 5.1
Identities = 5/62 (8%), Positives = 13/62 (20%), Gaps = 8/62 (12%)
Query: 471 YQCQYQCQYQCQYQCQCQCQCQ----CQCQCQCQYQYQYQYQYQYQYQYQYQCQCQCQCQ 526
+ Q C+ + C + + Y C+ + +
Sbjct: 45 KALSKHQDFNSAVQLVEN-FCRNPDGDEEGVWCYVAGKPGD---FGYCDLNYCEEAVEEE 100
Query: 527 CQ 528
Sbjct: 101 TG 102
>1zbt_A RF-1, peptide chain release factor 1; peptide chain release factor
1 (RF-1), structural joint center for structural
genomics, JCSG; 2.34A {Streptococcus mutans}
Length = 371
Score = 28.7 bits (65), Expect = 4.4
Identities = 13/57 (22%), Positives = 24/57 (42%), Gaps = 4/57 (7%)
Query: 252 PKRAIELIKEHRSIEKILENIDTKKYTVPEGWLYKEARELFRHPEIADPETIELVAD 308
KR +EL +E + + + K V +A+E+ + DPE E+ +
Sbjct: 42 TKRFMELSREEANSRETVAVYREYKQVVQN---IADAQEMIKDAS-GDPELEEMAKE 94
>4aqs_A Laminin subunit beta-1; cell adhesion; HET: NAG BMA MAN FUL; 3.11A
{Mus musculus}
Length = 525
Score = 28.9 bits (64), Expect = 5.0
Identities = 8/64 (12%), Positives = 16/64 (25%), Gaps = 5/64 (7%)
Query: 467 SRCQYQCQYQCQYQCQYQCQCQCQCQCQCQ--CQCQYQYQYQYQYQYQYQYQYQCQCQCQ 524
S C + + C C+ + C Y + ++ +
Sbjct: 261 SECAPVDGVNEEVEGMVHGHCMCRHNTKGLNCELCMDFY---HDLPWRPAEGRNSNACKK 317
Query: 525 CQCQ 528
C C
Sbjct: 318 CNCN 321
>2p26_A Integrin beta-2; hybrid domain, PSI domain, I-EGF DOM cell
adhesion; HET: NAG; 1.75A {Homo sapiens} PDB: 1yuk_B*
1yuk_A* 2p28_A*
Length = 280
Score = 28.7 bits (63), Expect = 5.1
Identities = 16/74 (21%), Positives = 28/74 (37%), Gaps = 14/74 (18%)
Query: 469 CQYQCQYQCQYQCQYQCQCQC-QCQC-------QCQCQCQYQYQYQYQYQ-YQYQYQYQC 519
C+ + Q + + C + +C C+C C+CQ Q + + + + C
Sbjct: 186 CRCRDQSRDRSLCHGKGFLECGICRCDTGYIGKNCECQTQGRSSQELEGSCRKDNNSIIC 245
Query: 520 ----QCQC-QCQCQ 528
C C QC C
Sbjct: 246 SGLGDCVCGQCLCH 259
>3shw_A Tight junction protein ZO-1; PDZ-SH3-GUK supramodule, cell
adhesion; 2.90A {Homo sapiens}
Length = 468
Score = 28.7 bits (63), Expect = 5.4
Identities = 10/47 (21%), Positives = 19/47 (40%), Gaps = 4/47 (8%)
Query: 362 RLVEHGLKPIYVFDGKPPTLKS-GELNKRMEKR--EDAQKALAKAQE 405
RL PI VF P + + + R+ + A+K ++ +
Sbjct: 295 RLNYAQWYPIVVFL-NPDSKQGVKTMRMRLCPESRKSARKLYERSHK 340
>2bmw_A Ferredoxin--NADP reductase; oxidoreductase, flavoprotein, FAD, FNR,
reductase reductase, phycobilisome, thylakoid; HET: FAD;
1.5A {Anabaena SP} SCOP: b.43.4.2 c.25.1.1 PDB: 1h42_A*
2vyq_A* 2vzl_A* 1ogi_A* 1ogj_A* 1gjr_A* 1e62_A* 1e64_A*
1quf_A* 1e63_A* 1go2_A* 1w34_A* 1b2r_A* 1w35_A* 1w87_A*
1que_A* 1ewy_A* 1gr1_A* 2bsa_A* 1bqe_A* ...
Length = 304
Score = 28.5 bits (64), Expect = 5.7
Identities = 10/61 (16%), Positives = 14/61 (22%), Gaps = 9/61 (14%)
Query: 381 LKSGELNKRMEK---REDAQKALAKA------QEQGKLKWSDPDEDGLVKYLCGDKNFAE 431
+ N R+ RE + E W Y+CG E
Sbjct: 210 QQKYPDNFRLTYAISREQKNPQGGRMYIQDRVAEHADQLWQLIKNQKTHTYICGPPPMEE 269
Query: 432 D 432
Sbjct: 270 G 270
>1ygr_A CD45 protein tyrosine phosphatase; protein tyrosine phosphatase,
RPTP, LCA, lymphocyte activation, hydrolase; HET: PTR;
2.90A {Homo sapiens} PDB: 1ygu_A*
Length = 610
Score = 28.6 bits (64), Expect = 6.0
Identities = 7/69 (10%), Positives = 18/69 (26%), Gaps = 7/69 (10%)
Query: 465 RKSRC-------QYQCQYQCQYQCQYQCQCQCQCQCQCQCQCQYQYQYQYQYQYQYQYQY 517
R+ RC QY +Q + + + + + + ++
Sbjct: 266 RRQRCLMVQVEAQYILIHQALVEYNQFGETEVNLSELHPYLHNMKKRDPPSEPSPLEAEF 325
Query: 518 QCQCQCQCQ 526
Q +
Sbjct: 326 QRLPSYRSW 334
>4aqb_A Mannan-binding lectin serine protease 1; blood clotting,
mannan-binding protein, complement, ficolins complement
pathway, mannose- binding lectin; HET: NAG BMA MAN;
4.20A {Homo sapiens}
Length = 361
Score = 28.4 bits (63), Expect = 6.1
Identities = 7/52 (13%), Positives = 15/52 (28%), Gaps = 11/52 (21%)
Query: 479 YQCQYQCQCQCQCQCQCQCQCQYQYQYQYQYQYQYQYQYQCQCQCQCQCQYQ 530
Y+ + Q + + Q +Y ++ Q C Y+
Sbjct: 275 YRAAGNECPELQPPVHGKIEPS-----------QAKYFFKDQVLVSCDTGYK 315
>1fnb_A Ferredoxin-NADP+ reductase; oxidoreductase
(NADP+(A),ferredoxin(A)); HET: FAD; 1.70A {Spinacia
oleracea} SCOP: b.43.4.2 c.25.1.1 PDB: 1fnc_A* 1fnd_A*
1bx1_A* 1frq_A* 1frn_A* 1bx0_A* 1qg0_A* 1qga_A* 1qfz_A*
1qfy_A* 1gaw_A* 1gaq_A* 3mhp_A* 1sm4_A* 2xnc_A*
Length = 314
Score = 28.2 bits (63), Expect = 7.0
Identities = 11/61 (18%), Positives = 19/61 (31%), Gaps = 9/61 (14%)
Query: 381 LKSGELNKRMEK---REDAQKALAKA------QEQGKLKWSDPDEDGLVKYLCGDKNFAE 431
+ N R++ RE + K + W +D Y+CG K +
Sbjct: 220 KEKAPDNFRLDFAVSREQTNEKGEKMYIQTRMAQYAVELWEMLKKDNTYVYMCGLKGMEK 279
Query: 432 D 432
Sbjct: 280 G 280
>2nlk_A Protein tyrosine phosphatase, receptor type, G VA (fragment);
PTPRG, R-PTP gamma, protein tyrosine phosphatase gamma,
D3S1 HPTPG, RPTPG, PTPG; 2.40A {Homo sapiens}
Length = 627
Score = 28.5 bits (64), Expect = 7.3
Identities = 9/68 (13%), Positives = 18/68 (26%), Gaps = 6/68 (8%)
Query: 465 RKSRC---QYQCQYQCQYQC---QYQCQCQCQCQCQCQCQCQYQYQYQYQYQYQYQYQYQ 518
R R Q + QY + + Q + + + Q++
Sbjct: 271 RTQRNYLVQTEEQYIFIHDALLEAILGKETEVSSNQLHSYVNSILIPGVGGKTRLEKQFK 330
Query: 519 CQCQCQCQ 526
QC +
Sbjct: 331 LVTQCNAK 338
>3kfv_A Tight junction protein ZO-3; structural genomics consortium, SGC,
cell junction, cell membrane, membrane, SH3 domain;
2.80A {Homo sapiens}
Length = 308
Score = 27.9 bits (61), Expect = 8.0
Identities = 11/46 (23%), Positives = 17/46 (36%), Gaps = 2/46 (4%)
Query: 362 RLVEHGLKPIYVFDGKPPTLKSGELNKRMEK--REDAQKALAKAQE 405
RL PI VF L + + R ++ A+AQ+
Sbjct: 212 RLNYVQYYPIVVFFIPESRPALKALRQWLAPASRRSTRRLYAQAQK 257
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G,
beta-propeller, protein binding; 3.30A {Rattus
norvegicus}
Length = 386
Score = 28.2 bits (62), Expect = 8.5
Identities = 14/88 (15%), Positives = 23/88 (26%), Gaps = 25/88 (28%)
Query: 469 CQYQCQ-----YQCQY-----------QCQYQCQCQ----CQCQCQ-----CQCQCQYQY 503
C +CQ QC CQ +C C C QC C+ Y
Sbjct: 13 CAQKCQMIRGAVQCTCHTGYRLTEDGRTCQDVNECAEEGYCSQGCTNSEGAFQCWCEAGY 72
Query: 504 QYQYQYQYQYQYQYQCQCQCQCQCQYQY 531
+ + + + + +
Sbjct: 73 ELRPDRRSCKALGPEPVLLFANRIDIRQ 100
>1xta_A Natrin 1; crisp, serine protease, ION channel blocking, cobra,
toxin; 1.58A {Naja atra} PDB: 2giz_A 1xx5_A 3mz8_A
1rc9_A 1wvr_A
Length = 221
Score = 27.6 bits (61), Expect = 8.8
Identities = 8/38 (21%), Positives = 12/38 (31%), Gaps = 5/38 (13%)
Query: 469 CQYQCQYQ-CQYQCQYQCQCQCQC---QCQCQCQCQYQ 502
C + C + Q CQ C C C+ +
Sbjct: 183 CTIYNKLTNCDSLLK-QSSCQDDWIKSNCPASCFCRNK 219
>3m7p_A FN1 protein; fibronectin, extracellular matrix, modular protein,
zinc BIN dimer, conformational change, cell adhesion;
HET: NAG 12P; 2.50A {Homo sapiens} PDB: 3mql_A* 1e88_A*
1e8b_A* 1qo6_A 2fn2_A*
Length = 308
Score = 27.7 bits (60), Expect = 9.4
Identities = 10/56 (17%), Positives = 15/56 (26%), Gaps = 2/56 (3%)
Query: 473 CQYQCQYQC-QYQCQCQCQCQ-CQCQCQCQYQYQYQYQYQYQYQYQYQCQCQCQCQ 526
C Y Q C C Y+ Q+ Q+ + +C C
Sbjct: 150 CGTTQNYDADQKFGFCPMAAHEEICTTNEGVMYRIGDQWDKQHDMGHMMRCTCVGN 205
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2,
lipopeptide, innate immunity, glycoprotein, immune RES
inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Length = 353
Score = 27.8 bits (62), Expect = 9.5
Identities = 3/18 (16%), Positives = 4/18 (22%)
Query: 485 CQCQCQCQCQCQCQCQYQ 502
Q C C+
Sbjct: 24 NQASLSCDRNGICKGSSG 41
>1f75_A Undecaprenyl pyrophosphate synthetase; parallel beta sheet, NEW
fold for isoprenoid synthase, peptidoglycan synthesis,
transferase; 2.20A {Micrococcus luteus} SCOP: c.101.1.1
Length = 249
Score = 27.5 bits (62), Expect = 9.6
Identities = 6/30 (20%), Positives = 14/30 (46%)
Query: 395 DAQKALAKAQEQGKLKWSDPDEDGLVKYLC 424
A + +A+ + G++ + E +YL
Sbjct: 156 SAVQLIAERYKSGEISLDEISETHFNEYLF 185
>2cxi_A Phenylalanyl-tRNA synthetase beta chain; aminoacyl-tRNA synthetase,
ligase, structural genomics; HET: MSE; 1.94A {Pyrococcus
horikoshii}
Length = 348
Score = 27.6 bits (61), Expect = 9.9
Identities = 12/36 (33%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
Query: 107 KLPVQEFHLEKVLEGMELSHEEFIDLCILLGCDYCD 142
K V + LE+++ G S EE+ DL + C+ D
Sbjct: 3 KFDVSKSDLERLI-GRSFSIEEWEDLVLYAKCELDD 37
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.322 0.137 0.424
Gapped
Lambda K H
0.267 0.0531 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 8,505,121
Number of extensions: 559195
Number of successful extensions: 4890
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3584
Number of HSP's successfully gapped: 506
Length of query: 531
Length of database: 6,701,793
Length adjustment: 98
Effective length of query: 433
Effective length of database: 3,965,535
Effective search space: 1717076655
Effective search space used: 1717076655
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 60 (27.3 bits)