RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy1206
(531 letters)
>d1ul1x1 a.60.7.1 (X:218-357) Flap endonuclease-1 (Fen-1 nuclease)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 140
Score = 99.3 bits (247), Expect = 2e-25
Identities = 50/79 (63%), Positives = 66/79 (83%)
Query: 124 LSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGWLYK 183
L+ E+F+DLCILLG DYC+SIRGIGPKRA++LI++H+SIE+I+ +D KY VPE WL+K
Sbjct: 1 LNQEQFVDLCILLGSDYCESIRGIGPKRAVDLIQKHKSIEEIVRRLDPNKYPVPENWLHK 60
Query: 184 EARELFRHPEVADPETIEF 202
EA +LF PEV DPE++E
Sbjct: 61 EAHQLFLEPEVLDPESVEL 79
Score = 92.0 bits (228), Expect = 9e-23
Identities = 48/75 (64%), Positives = 63/75 (84%)
Query: 232 FIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGWLYKEAREL 291
F+DLCILLG DYC+SIRGIGPKRA++LI++H+SIE+I+ +D KY VPE WL+KEA +L
Sbjct: 6 FVDLCILLGSDYCESIRGIGPKRAVDLIQKHKSIEEIVRRLDPNKYPVPENWLHKEAHQL 65
Query: 292 FRHPEIADPETIELV 306
F PE+ DPE++EL
Sbjct: 66 FLEPEVLDPESVELK 80
Score = 66.6 bits (162), Expect = 6e-14
Identities = 32/79 (40%), Positives = 49/79 (62%)
Query: 390 MEKREDAQKALAKAQEQGKLKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSTTT 449
E + + E +LKWS+P+E+ L+K++CG+K F+E+RIR+G K+L K+R +T
Sbjct: 60 KEAHQLFLEPEVLDPESVELKWSEPNEEELIKFMCGEKQFSEERIRSGVKRLSKSRQGST 119
Query: 450 QGRLDSFFTIRREEKRKSR 468
QGRLD FF + R
Sbjct: 120 QGRLDDFFKVTGSLSSAKR 138
Score = 65.4 bits (159), Expect = 2e-13
Identities = 32/61 (52%), Positives = 46/61 (75%), Gaps = 3/61 (4%)
Query: 3 LKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSSTTQGRLDSFFTIR---REEKR 59
LKWS+P+E+ L+K++CG+K F+E+RIR+G K+L K+R +TQGRLD FF + KR
Sbjct: 79 LKWSEPNEEELIKFMCGEKQFSEERIRSGVKRLSKSRQGSTQGRLDDFFKVTGSLSSAKR 138
Query: 60 K 60
K
Sbjct: 139 K 139
>d1ul1x2 c.120.1.2 (X:2-217) Flap endonuclease-1 (Fen-1 nuclease)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 216
Score = 87.2 bits (215), Expect = 3e-20
Identities = 70/114 (61%), Positives = 89/114 (78%), Gaps = 7/114 (6%)
Query: 304 ELVADVAPSSIRES-------RKICIDASMSLYQFLIAVRSEGNQLMSVDGEPTSHLMGT 356
+L+ADVAPS+IRE+ RK+ IDASMS+YQFLIAVR G+ L + +GE TSHLMG
Sbjct: 7 KLIADVAPSAIRENDIKSYFGRKVAIDASMSIYQFLIAVRQGGDVLQNEEGETTSHLMGM 66
Query: 357 FYRTIRLVEHGLKPIYVFDGKPPTLKSGELNKRMEKREDAQKALAKAQEQGKLK 410
FYRTIR++E+G+KP+YVFDGKPP LKSGEL KR E+R +A+K L +AQ G +
Sbjct: 67 FYRTIRMMENGIKPVYVFDGKPPQLKSGELAKRSERRAEAEKQLQQAQAAGAEQ 120
Score = 79.1 bits (194), Expect = 2e-17
Identities = 48/94 (51%), Positives = 61/94 (64%), Gaps = 3/94 (3%)
Query: 32 AKKLLKARSSTTQGRLDSFFTIRREEKRK---APCEAEAQCAAMVKAGKVYATATEDMDA 88
+K K T+ D + AP EAEA CAA+VKAGKVYA ATEDMD
Sbjct: 122 VEKFTKRLVKVTKQHNDECKHLLSLMGIPYLDAPSEAEASCAALVKAGKVYAAATEDMDC 181
Query: 89 LTFGSNILLRHMTFSEARKLPVQEFHLEKVLEGM 122
LTFGS +L+RH+T SEA+KLP+QEFHL ++L+ +
Sbjct: 182 LTFGSPVLMRHLTASEAKKLPIQEFHLSRILQEL 215
>d1a77a2 c.120.1.2 (A:2-208) Flap endonuclease-1 (Fen-1 nuclease)
{Archaeon Methanococcus jannaschii [TaxId: 2190]}
Length = 207
Score = 86.3 bits (213), Expect = 5e-20
Identities = 37/94 (39%), Positives = 58/94 (61%), Gaps = 1/94 (1%)
Query: 318 RKICIDASMSLYQFLIAVR-SEGNQLMSVDGEPTSHLMGTFYRTIRLVEHGLKPIYVFDG 376
+K+ ID +LYQFL ++R +G+ L + GE TS G FY+TI L+E+ + PI+VFDG
Sbjct: 21 KKVAIDGMNALYQFLTSIRLRDGSPLRNRKGEITSAYNGVFYKTIHLLENDITPIWVFDG 80
Query: 377 KPPTLKSGELNKRMEKREDAQKALAKAQEQGKLK 410
+PP LK R E +E A+ + +A ++ +
Sbjct: 81 EPPKLKEKTRKVRREMKEKAELKMKEAIKKEDFE 114
Score = 65.1 bits (158), Expect = 1e-12
Identities = 23/63 (36%), Positives = 37/63 (58%), Gaps = 3/63 (4%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVLE 120
AP E EAQ + M K G V+A ++D DAL +G+ ++R++T + K + L +VLE
Sbjct: 148 APSEGEAQASYMAKKGDVWAVVSQDYDALLYGAPRVVRNLTTT---KEMPELIELNEVLE 204
Query: 121 GME 123
+
Sbjct: 205 DLR 207
>d1b43a1 a.60.7.1 (A:220-339) Flap endonuclease-1 (Fen-1 nuclease)
{Archaeon Pyrococcus furiosus [TaxId: 2261]}
Length = 120
Score = 82.2 bits (203), Expect = 1e-19
Identities = 21/80 (26%), Positives = 37/80 (46%), Gaps = 9/80 (11%)
Query: 124 LSHEEFIDLCILLGCDYC-DSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGWLY 182
L+ E+ I+L IL+G DY I+GIG K+A+E+++ + +
Sbjct: 1 LTREKLIELAILVGTDYNPGGIKGIGLKKALEIVRHSKDPLAKFQ--------KQSDVDL 52
Query: 183 KEARELFRHPEVADPETIEF 202
+E F +P V D + +
Sbjct: 53 YAIKEFFLNPPVTDNYNLVW 72
Score = 74.5 bits (183), Expect = 7e-17
Identities = 18/74 (24%), Positives = 32/74 (43%), Gaps = 9/74 (12%)
Query: 232 FIDLCILLGCDYC-DSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGWLYKEARE 290
I+L IL+G DY I+GIG K+A+E+++ + + +E
Sbjct: 6 LIELAILVGTDYNPGGIKGIGLKKALEIVRHSKDPLAKFQ--------KQSDVDLYAIKE 57
Query: 291 LFRHPEIADPETIE 304
F +P + D +
Sbjct: 58 FFLNPPVTDNYNLV 71
Score = 71.5 bits (175), Expect = 9e-16
Identities = 22/51 (43%), Positives = 37/51 (72%)
Query: 408 KLKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSTTTQGRLDSFFT 458
L W DPDE+G++K+LC + +F+E+R++NG ++L KA + Q L+S+F
Sbjct: 69 NLVWRDPDEEGILKFLCDEHDFSEERVKNGLERLKKAIKSGKQSTLESWFK 119
Score = 70.7 bits (173), Expect = 2e-15
Identities = 23/50 (46%), Positives = 37/50 (74%)
Query: 3 LKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSSTTQGRLDSFFT 52
L W DPDE+G++K+LC + +F+E+R++NG ++L KA S Q L+S+F
Sbjct: 70 LVWRDPDEEGILKFLCDEHDFSEERVKNGLERLKKAIKSGKQSTLESWFK 119
>d1rxwa1 a.60.7.1 (A:220-324) Flap endonuclease-1 (Fen-1 nuclease)
{Archaeon Archaeoglobus fulgidus [TaxId: 2234]}
Length = 105
Score = 81.1 bits (200), Expect = 2e-19
Identities = 26/79 (32%), Positives = 42/79 (53%), Gaps = 6/79 (7%)
Query: 124 LSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGWLYK 183
L+ E+ ID+ IL+G DY + ++G+G K+A+ IK + I + L+ + +
Sbjct: 1 LTREQLIDIAILVGTDYNEGVKGVGVKKALNYIKTYGDIFRALKALKVNI------DHVE 54
Query: 184 EARELFRHPEVADPETIEF 202
E R F +P V D IEF
Sbjct: 55 EIRNFFLNPPVTDDYRIEF 73
Score = 74.6 bits (183), Expect = 5e-17
Identities = 22/74 (29%), Positives = 37/74 (50%), Gaps = 6/74 (8%)
Query: 232 FIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGWLYKEAREL 291
ID+ IL+G DY + ++G+G K+A+ IK + I + L+ + +E R
Sbjct: 6 LIDIAILVGTDYNEGVKGVGVKKALNYIKTYGDIFRALKALKVNI------DHVEEIRNF 59
Query: 292 FRHPEIADPETIEL 305
F +P + D IE
Sbjct: 60 FLNPPVTDDYRIEF 73
Score = 44.5 bits (105), Expect = 2e-06
Identities = 8/34 (23%), Positives = 23/34 (67%)
Query: 408 KLKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKL 441
++++ +PD + +++LC + +F+ +R+ +KL
Sbjct: 70 RIEFREPDFEKAIEFLCEEHDFSRERVEKALEKL 103
Score = 43.7 bits (103), Expect = 3e-06
Identities = 8/33 (24%), Positives = 22/33 (66%)
Query: 3 LKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKL 35
+++ +PD + +++LC + +F+ +R+ +KL
Sbjct: 71 IEFREPDFEKAIEFLCEEHDFSRERVEKALEKL 103
>d1a77a1 a.60.7.1 (A:209-316) Flap endonuclease-1 (Fen-1 nuclease)
{Archaeon Methanococcus jannaschii [TaxId: 2190]}
Length = 108
Score = 79.1 bits (195), Expect = 1e-18
Identities = 21/80 (26%), Positives = 41/80 (51%), Gaps = 11/80 (13%)
Query: 124 LSHEEFIDLCILLGCDYC-DSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGWLY 182
+S ++ ID+ I +G DY ++GIG KRA EL++ + + + + + Y
Sbjct: 1 ISLDDLIDIAIFMGTDYNPGGVKGIGFKRAYELVRSGVAKDVLKKEV----------EYY 50
Query: 183 KEARELFRHPEVADPETIEF 202
E + +F+ P+V D ++
Sbjct: 51 DEIKRIFKEPKVTDNYSLSL 70
Score = 72.6 bits (178), Expect = 3e-16
Identities = 20/75 (26%), Positives = 38/75 (50%), Gaps = 11/75 (14%)
Query: 232 FIDLCILLGCDYC-DSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGWLYKEARE 290
ID+ I +G DY ++GIG KRA EL++ + + + + + Y E +
Sbjct: 6 LIDIAIFMGTDYNPGGVKGIGFKRAYELVRSGVAKDVLKKEV----------EYYDEIKR 55
Query: 291 LFRHPEIADPETIEL 305
+F+ P++ D ++ L
Sbjct: 56 IFKEPKVTDNYSLSL 70
Score = 52.2 bits (125), Expect = 4e-09
Identities = 12/41 (29%), Positives = 23/41 (56%)
Query: 3 LKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSSTT 43
L PD++G++K+L + +F DR++ KL ++ T
Sbjct: 68 LSLKLPDKEGIIKFLVDENDFNYDRVKKHVDKLYNLIANKT 108
Score = 51.8 bits (124), Expect = 5e-09
Identities = 12/45 (26%), Positives = 23/45 (51%)
Query: 405 EQGKLKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSTTT 449
+ L PD++G++K+L + +F DR++ KL + T
Sbjct: 64 DNYSLSLKLPDKEGIIKFLVDENDFNYDRVKKHVDKLYNLIANKT 108
>d1rxwa2 c.120.1.2 (A:3-219) Flap endonuclease-1 (Fen-1 nuclease)
{Archaeon Archaeoglobus fulgidus [TaxId: 2234]}
Length = 217
Score = 79.4 bits (195), Expect = 1e-17
Identities = 26/72 (36%), Positives = 37/72 (51%), Gaps = 1/72 (1%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVLE 120
AP E EAQ A M G V T ++D D+L FGS L R++ + RKLP + +++ E
Sbjct: 146 APSEGEAQAAYMAAKGDVEYTGSQDYDSLLFGSPRLARNLAITGKRKLPGKNVYVDVKPE 205
Query: 121 GMELSHEEFIDL 132
+ L L
Sbjct: 206 IIILE-SNLKRL 216
Score = 78.2 bits (192), Expect = 3e-17
Identities = 34/81 (41%), Positives = 52/81 (64%), Gaps = 1/81 (1%)
Query: 318 RKICIDASMSLYQFLIAVR-SEGNQLMSVDGEPTSHLMGTFYRTIRLVEHGLKPIYVFDG 376
+KI +DA +LYQF+ +R +G L G TSHL G YR +VE G++P++VFDG
Sbjct: 20 KKIAVDAFNTLYQFISIIRQPDGTPLKDSQGRITSHLSGILYRVSNMVEVGIRPVFVFDG 79
Query: 377 KPPTLKSGELNKRMEKREDAQ 397
+PP K E+ +R ++R +A+
Sbjct: 80 EPPEFKKAEIEERKKRRAEAE 100
>d1b43a2 c.120.1.2 (A:1-219) Flap endonuclease-1 (Fen-1 nuclease)
{Archaeon Pyrococcus furiosus [TaxId: 2261]}
Length = 219
Score = 79.5 bits (195), Expect = 2e-17
Identities = 30/72 (41%), Positives = 44/72 (61%), Gaps = 1/72 (1%)
Query: 61 APCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVLE 120
AP E EAQ A M G VYA+A++D D+L FG+ L+R++T + RKLP + ++E E
Sbjct: 148 APSEGEAQAAYMAAKGSVYASASQDYDSLLFGAPRLVRNLTITGKRKLPGKNVYVEIKPE 207
Query: 121 GMELSHEEFIDL 132
+ L E +L
Sbjct: 208 LIILE-EVLKEL 218
Score = 77.9 bits (191), Expect = 5e-17
Identities = 48/94 (51%), Positives = 65/94 (69%), Gaps = 1/94 (1%)
Query: 318 RKICIDASMSLYQFLIAVR-SEGNQLMSVDGEPTSHLMGTFYRTIRLVEHGLKPIYVFDG 376
+KI IDA ++YQFL +R +G LM G TSHL G FYRTI L+E G+KP+YVFDG
Sbjct: 21 KKIAIDALNAIYQFLSTIRQKDGTPLMDSKGRITSHLSGLFYRTINLMEAGIKPVYVFDG 80
Query: 377 KPPTLKSGELNKRMEKREDAQKALAKAQEQGKLK 410
+PP K EL KR E RE+A++ +A E+G+++
Sbjct: 81 EPPEFKKKELEKRREAREEAEEKWREALEKGEIE 114
>d1xo1a1 a.60.7.1 (A:186-290) T5 5'-exonuclease {Bacteriophage T5
[TaxId: 10726]}
Length = 105
Score = 44.6 bits (105), Expect = 1e-06
Identities = 20/76 (26%), Positives = 33/76 (43%), Gaps = 2/76 (2%)
Query: 127 EEFIDLCILLG--CDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGWLYKE 184
E+FI L ++G D + GIG KR +I+E ++ I++ + L
Sbjct: 5 EQFISLKAIMGDLGDNIRGVEGIGAKRGYNIIREFGNVLDIIDQLPLPGKQKYIQNLNAS 64
Query: 185 ARELFRHPEVADPETI 200
LFR+ + D T
Sbjct: 65 EELLFRNLILVDLPTY 80
Score = 43.4 bits (102), Expect = 4e-06
Identities = 20/80 (25%), Positives = 33/80 (41%), Gaps = 2/80 (2%)
Query: 232 FIDLCILLG--CDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGWLYKEAR 289
FI L ++G D + GIG KR +I+E ++ I++ + L
Sbjct: 7 FISLKAIMGDLGDNIRGVEGIGAKRGYNIIREFGNVLDIIDQLPLPGKQKYIQNLNASEE 66
Query: 290 ELFRHPEIADPETIELVADV 309
LFR+ + D T + A
Sbjct: 67 LLFRNLILVDLPTYCVDAIA 86
Score = 38.8 bits (90), Expect = 2e-04
Identities = 21/92 (22%), Positives = 36/92 (39%), Gaps = 12/92 (13%)
Query: 194 VADPETIEFIDLCILLG--CDYCDSIRGIGPKRAIELLYSFIDLCILLGCDYCDSIRGIG 251
V D E +FI L ++G D + GIG KR ++ F ++ D D + G
Sbjct: 1 VDDVE--QFISLKAIMGDLGDNIRGVEGIGAKRGYNIIREFGNV-----LDIIDQLPLPG 53
Query: 252 PKRAIELIKEHR---SIEKILENIDTKKYTVP 280
++ I+ + IL ++ T
Sbjct: 54 KQKYIQNLNASEELLFRNLILVDLPTYCVDAI 85
>d1kfta_ a.60.2.3 (A:) Excinuclease UvrC C-terminal domain
{Escherichia coli [TaxId: 562]}
Length = 56
Score = 40.5 bits (95), Expect = 1e-05
Identities = 15/50 (30%), Positives = 20/50 (40%), Gaps = 3/50 (6%)
Query: 215 DSIRGIGPKRAIELLYSFIDLCILLGCDYCD--SIRGIGPKRAIELIKEH 262
++I G+GPKR LL L L + + GI A E I
Sbjct: 5 ETIEGVGPKRRQMLLKYMGGLQGLRNASVEEIAKVPGISQGLA-EKIFWS 53
Score = 35.5 bits (82), Expect = 0.001
Identities = 8/27 (29%), Positives = 15/27 (55%)
Query: 142 DSIRGIGPKRAIELIKEHRSIEKILEN 168
++I G+GPKR L+K ++ +
Sbjct: 5 ETIEGVGPKRRQMLLKYMGGLQGLRNA 31
Score = 35.5 bits (82), Expect = 0.001
Identities = 8/27 (29%), Positives = 15/27 (55%)
Query: 245 DSIRGIGPKRAIELIKEHRSIEKILEN 271
++I G+GPKR L+K ++ +
Sbjct: 5 ETIEGVGPKRRQMLLKYMGGLQGLRNA 31
>d2bgwa1 a.60.2.5 (A:160-229) DNA repair endonuclease XPF {Aeropyrum
pernix [TaxId: 56636]}
Length = 70
Score = 39.0 bits (91), Expect = 7e-05
Identities = 17/50 (34%), Positives = 22/50 (44%), Gaps = 3/50 (6%)
Query: 215 DSIRGIGPKRAIELLYSFIDLCILLGCDYCD--SIRGIGPKRAIELIKEH 262
S GIG + A +L F L + + GIG KRA E IK+
Sbjct: 16 QSFPGIGRRTAERILERFGSLERFFTASKAEISKVEGIGEKRA-EEIKKI 64
Score = 30.5 bits (69), Expect = 0.065
Identities = 7/26 (26%), Positives = 13/26 (50%)
Query: 142 DSIRGIGPKRAIELIKEHRSIEKILE 167
S GIG + A +++ S+E+
Sbjct: 16 QSFPGIGRRTAERILERFGSLERFFT 41
Score = 30.5 bits (69), Expect = 0.065
Identities = 7/26 (26%), Positives = 13/26 (50%)
Query: 245 DSIRGIGPKRAIELIKEHRSIEKILE 270
S GIG + A +++ S+E+
Sbjct: 16 QSFPGIGRRTAERILERFGSLERFFT 41
>d1n8yc3 g.3.9.1 (C:166-322) Protooncoprotein Her2 extracellular
domain {Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 157
Score = 39.4 bits (90), Expect = 2e-04
Identities = 5/64 (7%), Positives = 14/64 (21%)
Query: 468 RCQYQCQYQCQYQCQYQCQCQCQCQCQCQCQCQYQYQYQYQYQYQYQYQYQCQCQCQCQC 527
RC+ + C ++ + C + +
Sbjct: 40 RCKGRLPTDCCHEQCAAGCTGPKHSDCLACLHFNHSGICELHCPALVTYNTDTFESMHNP 99
Query: 528 QYQY 531
+ +Y
Sbjct: 100 EGRY 103
Score = 38.3 bits (87), Expect = 7e-04
Identities = 5/66 (7%), Positives = 9/66 (13%)
Query: 466 KSRCQYQCQYQCQYQCQYQCQCQCQCQCQCQCQCQYQYQYQYQYQYQYQYQYQCQCQCQC 525
+ + + + Y Y C C
Sbjct: 70 LHFNHSGICELHCPALVTYNTDTFESMHNPEGRYTFGASCVTTCPYNYLSTEVGSCTLVC 129
Query: 526 QCQYQY 531
Q
Sbjct: 130 PPNNQE 135
Score = 37.1 bits (84), Expect = 0.001
Identities = 5/63 (7%), Positives = 9/63 (14%)
Query: 469 CQYQCQYQCQYQCQYQCQCQCQCQCQCQCQCQYQYQYQYQYQYQYQYQYQCQCQCQCQCQ 528
+ + + + Y Y C C Q
Sbjct: 75 SGICELHCPALVTYNTDTFESMHNPEGRYTFGASCVTTCPYNYLSTEVGSCTLVCPPNNQ 134
Query: 529 YQY 531
Sbjct: 135 EVT 137
Score = 36.0 bits (81), Expect = 0.004
Identities = 2/61 (3%), Positives = 11/61 (18%)
Query: 469 CQYQCQYQCQYQCQYQCQCQCQCQCQCQCQCQYQYQYQYQYQYQYQYQYQCQCQCQCQCQ 528
C ++ + C + ++ + +
Sbjct: 45 LPTDCCHEQCAAGCTGPKHSDCLACLHFNHSGICELHCPALVTYNTDTFESMHNPEGRYT 104
Query: 529 Y 529
+
Sbjct: 105 F 105
Score = 35.6 bits (80), Expect = 0.006
Identities = 5/66 (7%), Positives = 10/66 (15%)
Query: 466 KSRCQYQCQYQCQYQCQYQCQCQCQCQCQCQCQCQYQYQYQYQYQYQYQYQYQCQCQCQC 525
+ + + +Y + Y Y C
Sbjct: 68 ACLHFNHSGICELHCPALVTYNTDTFESMHNPEGRYTFGASCVTTCPYNYLSTEVGSCTL 127
Query: 526 QCQYQY 531
C
Sbjct: 128 VCPPNN 133
Score = 34.4 bits (77), Expect = 0.014
Identities = 2/62 (3%), Positives = 12/62 (19%)
Query: 469 CQYQCQYQCQYQCQYQCQCQCQCQCQCQCQCQYQYQYQYQYQYQYQYQYQCQCQCQCQCQ 528
+C+ + C ++ + + + +
Sbjct: 37 GCARCKGRLPTDCCHEQCAAGCTGPKHSDCLACLHFNHSGICELHCPALVTYNTDTFESM 96
Query: 529 YQ 530
+
Sbjct: 97 HN 98
Score = 33.3 bits (74), Expect = 0.037
Identities = 5/61 (8%), Positives = 10/61 (16%)
Query: 468 RCQYQCQYQCQYQCQYQCQCQCQCQCQCQCQCQYQYQYQYQYQYQYQYQYQCQCQCQCQC 527
+ ++ + + C Y Y C Q
Sbjct: 78 CELHCPALVTYNTDTFESMHNPEGRYTFGASCVTTCPYNYLSTEVGSCTLVCPPNNQEVT 137
Query: 528 Q 528
Sbjct: 138 A 138
Score = 32.9 bits (73), Expect = 0.039
Identities = 4/62 (6%), Positives = 7/62 (11%)
Query: 469 CQYQCQYQCQYQCQYQCQCQCQCQCQCQCQCQYQYQYQYQYQYQYQYQYQCQCQCQCQCQ 528
+ + + Y Y C Q
Sbjct: 77 ICELHCPALVTYNTDTFESMHNPEGRYTFGASCVTTCPYNYLSTEVGSCTLVCPPNNQEV 136
Query: 529 YQ 530
Sbjct: 137 TA 138
Score = 32.9 bits (73), Expect = 0.045
Identities = 1/62 (1%), Positives = 9/62 (14%)
Query: 466 KSRCQYQCQYQCQYQCQYQCQCQCQCQCQCQCQCQYQYQYQYQYQYQYQYQYQCQCQCQC 525
+ + + C + ++ + +
Sbjct: 44 RLPTDCCHEQCAAGCTGPKHSDCLACLHFNHSGICELHCPALVTYNTDTFESMHNPEGRY 103
Query: 526 QC 527
Sbjct: 104 TF 105
Score = 32.1 bits (71), Expect = 0.082
Identities = 2/62 (3%), Positives = 12/62 (19%)
Query: 469 CQYQCQYQCQYQCQYQCQCQCQCQCQCQCQCQYQYQYQYQYQYQYQYQYQCQCQCQCQCQ 528
C ++ ++ C + ++ + + +
Sbjct: 49 CCHEQCAAGCTGPKHSDCLACLHFNHSGICELHCPALVTYNTDTFESMHNPEGRYTFGAS 108
Query: 529 YQ 530
Sbjct: 109 CV 110
Score = 31.7 bits (70), Expect = 0.094
Identities = 5/66 (7%), Positives = 12/66 (18%), Gaps = 3/66 (4%)
Query: 469 CQYQCQYQCQYQCQ---YQCQCQCQCQCQCQCQCQYQYQYQYQYQYQYQYQYQCQCQCQC 525
CQ C +C+ + C + ++ +
Sbjct: 22 SPEDCQILTGTICTSGCARCKGRLPTDCCHEQCAAGCTGPKHSDCLACLHFNHSGICELH 81
Query: 526 QCQYQY 531
Sbjct: 82 CPALVT 87
Score = 31.4 bits (69), Expect = 0.15
Identities = 7/60 (11%), Positives = 13/60 (21%), Gaps = 1/60 (1%)
Query: 472 QCQYQCQYQCQYQCQCQCQCQCQCQCQCQYQYQYQYQYQYQYQYQYQCQCQCQCQCQYQY 531
C + CQ C C C+ + ++ + C
Sbjct: 17 HCWGESPEDCQILTGTICTSGCAR-CKGRLPTDCCHEQCAAGCTGPKHSDCLACLHFNHS 75
Score = 31.4 bits (69), Expect = 0.15
Identities = 7/66 (10%), Positives = 16/66 (24%), Gaps = 1/66 (1%)
Query: 466 KSRCQYQCQYQCQYQCQYQC-QCQCQCQCQCQCQCQYQYQYQYQYQYQYQYQYQCQCQCQ 524
+ C + CQ C +C+ + C ++ ++ C
Sbjct: 15 DNHCWGESPEDCQILTGTICTSGCARCKGRLPTDCCHEQCAAGCTGPKHSDCLACLHFNH 74
Query: 525 CQCQYQ 530
Sbjct: 75 SGICEL 80
Score = 31.0 bits (68), Expect = 0.22
Identities = 8/65 (12%), Positives = 17/65 (26%), Gaps = 2/65 (3%)
Query: 469 CQYQCQ-YQCQYQCQYQCQCQCQCQC-QCQCQCQYQYQYQYQYQYQYQYQYQCQCQCQCQ 526
C C+ C + CQ C +C+ + ++ +
Sbjct: 9 CAPACKDNHCWGESPEDCQILTGTICTSGCARCKGRLPTDCCHEQCAAGCTGPKHSDCLA 68
Query: 527 CQYQY 531
C +
Sbjct: 69 CLHFN 73
Score = 29.4 bits (64), Expect = 0.69
Identities = 3/63 (4%), Positives = 10/63 (15%)
Query: 469 CQYQCQYQCQYQCQYQCQCQCQCQCQCQCQCQYQYQYQYQYQYQYQYQYQCQCQCQCQCQ 528
++ C ++ + + + C
Sbjct: 53 QCAAGCTGPKHSDCLACLHFNHSGICELHCPALVTYNTDTFESMHNPEGRYTFGASCVTT 112
Query: 529 YQY 531
Y
Sbjct: 113 CPY 115
Score = 29.4 bits (64), Expect = 0.71
Identities = 6/66 (9%), Positives = 13/66 (19%), Gaps = 4/66 (6%)
Query: 467 SRCQYQCQYQCQYQCQYQCQCQCQCQCQCQCQCQYQYQYQYQYQYQYQ----YQYQCQCQ 522
++ + + + C C Y Y Q
Sbjct: 81 HCPALVTYNTDTFESMHNPEGRYTFGASCVTTCPYNYLSTEVGSCTLVCPPNNQEVTAED 140
Query: 523 CQCQCQ 528
+C+
Sbjct: 141 GTQRCE 146
Score = 26.3 bits (56), Expect = 5.7
Identities = 9/56 (16%), Positives = 11/56 (19%), Gaps = 2/56 (3%)
Query: 476 QCQYQCQYQCQ-CQCQCQCQCQCQCQYQYQYQYQYQYQYQYQYQCQCQCQCQCQYQ 530
C C C+ C + CQ C QC
Sbjct: 5 ACP-PCAPACKDNHCWGESPEDCQILTGTICTSGCARCKGRLPTDCCHEQCAAGCT 59
Score = 26.0 bits (55), Expect = 8.6
Identities = 4/59 (6%), Positives = 8/59 (13%)
Query: 469 CQYQCQYQCQYQCQYQCQCQCQCQCQCQCQCQYQYQYQYQYQYQYQYQYQCQCQCQCQC 527
+ + + Q +C C C
Sbjct: 98 NPEGRYTFGASCVTTCPYNYLSTEVGSCTLVCPPNNQEVTAEDGTQRCEKCSKPCARVC 156
>d1x2ia1 a.60.2.5 (A:2-69) ATP-dependent RNA helicase PF2015
{Pyrococcus furiosus [TaxId: 2261]}
Length = 68
Score = 37.1 bits (86), Expect = 2e-04
Identities = 10/50 (20%), Positives = 19/50 (38%), Gaps = 3/50 (6%)
Query: 215 DSIRGIGPKRAIELLYSFIDLCILLGCDYCD--SIRGIGPKRAIELIKEH 262
+ + + A LL F + + + + GIG K A + I+
Sbjct: 13 EGLPHVSATLARRLLKHFGSVERVFTASVAELMKVEGIGEKIA-KEIRRV 61
Score = 32.8 bits (75), Expect = 0.009
Identities = 6/36 (16%), Positives = 15/36 (41%), Gaps = 7/36 (19%)
Query: 142 DSIRGIGPKRAIELIKEHRSIEKI-------LENID 170
+ + + A L+K S+E++ L ++
Sbjct: 13 EGLPHVSATLARRLLKHFGSVERVFTASVAELMKVE 48
Score = 32.8 bits (75), Expect = 0.009
Identities = 6/36 (16%), Positives = 15/36 (41%), Gaps = 7/36 (19%)
Query: 245 DSIRGIGPKRAIELIKEHRSIEKI-------LENID 273
+ + + A L+K S+E++ L ++
Sbjct: 13 EGLPHVSATLARRLLKHFGSVERVFTASVAELMKVE 48
>d1ky8a_ c.82.1.1 (A:) Non-phosphorylating
glyceraldehyde-3-phosphate dehydrogenase GapN {Archaeon
Thermoproteus tenax [TaxId: 2271]}
Length = 499
Score = 37.2 bits (85), Expect = 0.004
Identities = 12/139 (8%), Positives = 33/139 (23%), Gaps = 19/139 (13%)
Query: 393 REDAQKALAKAQEQGKLKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSTTTQGR 452
RE+ ++ L ++G+ D +R+ +L+ + +
Sbjct: 51 REEVERTLDVLFKRGRWSARDMP--------------GTERLA-----VLRKAADIIERN 91
Query: 453 LDSFFTIRREEKRKSRCQYQCQYQCQYQCQYQCQCQCQCQCQCQCQCQYQYQYQYQYQYQ 512
LD F + K + + + + + + Y
Sbjct: 92 LDVFAEVLVMNAGKPKSAAVGEVKAAVDRLRLAELDLKKIGGDYIPGDWTYDTLETEGLV 151
Query: 513 YQYQYQCQCQCQCQCQYQY 531
+ +
Sbjct: 152 RREPLGVVAAITPFNYPLF 170
>d1moxa3 g.3.9.1 (A:163-311) EGF receptor Cys-rich domains {Human
(Homo sapiens) [TaxId: 9606]}
Length = 149
Score = 35.1 bits (79), Expect = 0.008
Identities = 4/62 (6%), Positives = 8/62 (12%)
Query: 470 QYQCQYQCQYQCQYQCQCQCQCQCQCQCQCQYQYQYQYQYQYQYQYQYQCQCQCQCQCQY 529
Q + + + + Y C C
Sbjct: 70 DEATCKDTCPPLMLYNPTTYQMDVNPEGKYSFGATCVKKCPRNYVVTDHGSCVRACGADS 129
Query: 530 QY 531
Sbjct: 130 YE 131
Score = 34.3 bits (77), Expect = 0.011
Identities = 6/65 (9%), Positives = 13/65 (20%)
Query: 467 SRCQYQCQYQCQYQCQYQCQCQCQCQCQCQCQCQYQYQYQYQYQYQYQYQYQCQCQCQCQ 526
RC+ + C + + C+ Q
Sbjct: 35 GRCRGKSPSDCCHNQCAAGCTGPRESDCLVCRKFRDEATCKDTCPPLMLYNPTTYQMDVN 94
Query: 527 CQYQY 531
+ +Y
Sbjct: 95 PEGKY 99
Score = 33.9 bits (76), Expect = 0.019
Identities = 3/63 (4%), Positives = 9/63 (14%)
Query: 469 CQYQCQYQCQYQCQYQCQCQCQCQCQCQCQCQYQYQYQYQYQYQYQYQYQCQCQCQCQCQ 528
+ + C+ Q + +
Sbjct: 39 GKSPSDCCHNQCAAGCTGPRESDCLVCRKFRDEATCKDTCPPLMLYNPTTYQMDVNPEGK 98
Query: 529 YQY 531
Y +
Sbjct: 99 YSF 101
Score = 31.2 bits (69), Expect = 0.14
Identities = 10/75 (13%), Positives = 21/75 (28%), Gaps = 9/75 (12%)
Query: 466 KSRCQYQCQYQCQYQCQYQCQCQCQCQCQCQCQCQYQYQYQYQYQY---------QYQYQ 516
C + CQ + C QC +C+ + + +++
Sbjct: 10 NGSCWGAGEENCQKLTKIICAQQCSGRCRGKSPSDCCHNQCAAGCTGPRESDCLVCRKFR 69
Query: 517 YQCQCQCQCQCQYQY 531
+ C+ C Y
Sbjct: 70 DEATCKDTCPPLMLY 84
Score = 30.9 bits (68), Expect = 0.19
Identities = 5/62 (8%), Positives = 10/62 (16%)
Query: 467 SRCQYQCQYQCQYQCQYQCQCQCQCQCQCQCQCQYQYQYQYQYQYQYQYQYQCQCQCQCQ 526
S C + + C+ YQ + +
Sbjct: 43 SDCCHNQCAAGCTGPRESDCLVCRKFRDEATCKDTCPPLMLYNPTTYQMDVNPEGKYSFG 102
Query: 527 CQ 528
Sbjct: 103 AT 104
Score = 30.1 bits (66), Expect = 0.35
Identities = 7/54 (12%), Positives = 13/54 (24%), Gaps = 1/54 (1%)
Query: 476 QCQYQCQYQCQCQCQCQCQCQCQCQYQYQYQYQYQYQYQYQYQCQCQCQCQCQY 529
+C C C + CQ + Q + + + C
Sbjct: 3 KCDPSCP-NGSCWGAGEENCQKLTKIICAQQCSGRCRGKSPSDCCHNQCAAGCT 55
Score = 29.3 bits (64), Expect = 0.68
Identities = 6/65 (9%), Positives = 8/65 (12%), Gaps = 7/65 (10%)
Query: 465 RKSRCQYQCQYQCQYQCQYQCQCQCQCQCQCQCQCQYQYQYQYQYQYQYQYQYQCQCQCQ 524
K C Y + + Y C C
Sbjct: 74 CKDTCPPLMLYNPTTYQMDVNPEGKYSFGATCVKKCPRN-------YVVTDHGSCVRACG 126
Query: 525 CQCQY 529
Sbjct: 127 ADSYE 131
Score = 27.0 bits (58), Expect = 3.8
Identities = 7/62 (11%), Positives = 14/62 (22%), Gaps = 1/62 (1%)
Query: 469 CQYQCQYQCQYQCQYQCQCQCQCQCQCQCQCQYQYQYQYQYQYQYQYQYQCQCQCQCQCQ 528
C C + CQ + C QC + + + + +
Sbjct: 4 CDPSCP-NGSCWGAGEENCQKLTKIICAQQCSGRCRGKSPSDCCHNQCAAGCTGPRESDC 62
Query: 529 YQ 530
Sbjct: 63 LV 64
Score = 26.6 bits (57), Expect = 4.8
Identities = 4/63 (6%), Positives = 9/63 (14%)
Query: 469 CQYQCQYQCQYQCQYQCQCQCQCQCQCQCQCQYQYQYQYQYQYQYQYQYQCQCQCQCQCQ 528
+ C+ YQ + + C +
Sbjct: 49 QCAAGCTGPRESDCLVCRKFRDEATCKDTCPPLMLYNPTTYQMDVNPEGKYSFGATCVKK 108
Query: 529 YQY 531
Sbjct: 109 CPR 111
>d1m6ba3 g.3.9.1 (A:166-310) Receptor protein-tyrosine kinase Erbb-3
Cys-rich domains {Human (Homo sapiens) [TaxId: 9606]}
Length = 145
Score = 34.3 bits (77), Expect = 0.011
Identities = 8/64 (12%), Positives = 14/64 (21%)
Query: 467 SRCQYQCQYQCQYQCQYQCQCQCQCQCQCQCQCQYQYQYQYQYQYQYQYQYQCQCQCQCQ 526
+ + C QC C QC Q + ++ Q
Sbjct: 20 TLTKTICAPQCNGHCFGPNPNQCCHDECAGGCSGPQDTDCFACRHFNDSGACVPRCPQPL 79
Query: 527 CQYQ 530
+
Sbjct: 80 VYNK 83
Score = 34.3 bits (77), Expect = 0.012
Identities = 10/63 (15%), Positives = 14/63 (22%)
Query: 469 CQYQCQYQCQYQCQYQCQCQCQCQCQCQCQCQYQYQYQYQYQYQYQYQYQCQCQCQCQCQ 528
CQ + C QC C QC Q + ++ Q
Sbjct: 18 CQTLTKTICAPQCNGHCFGPNPNQCCHDECAGGCSGPQDTDCFACRHFNDSGACVPRCPQ 77
Query: 529 YQY 531
Sbjct: 78 PLV 80
Score = 33.2 bits (74), Expect = 0.029
Identities = 8/66 (12%), Positives = 13/66 (19%)
Query: 466 KSRCQYQCQYQCQYQCQYQCQCQCQCQCQCQCQCQYQYQYQYQYQYQYQYQYQCQCQCQC 525
C QC + Q C+ Q + Q +
Sbjct: 31 NGHCFGPNPNQCCHDECAGGCSGPQDTDCFACRHFNDSGACVPRCPQPLVYNKLTFQLEP 90
Query: 526 QCQYQY 531
+Y
Sbjct: 91 NPHTKY 96
Score = 32.0 bits (71), Expect = 0.065
Identities = 10/67 (14%), Positives = 16/67 (23%)
Query: 465 RKSRCQYQCQYQCQYQCQYQCQCQCQCQCQCQCQCQYQYQYQYQYQYQYQYQYQCQCQCQ 524
K+ C QC C QC Q + ++ Q
Sbjct: 22 TKTICAPQCNGHCFGPNPNQCCHDECAGGCSGPQDTDCFACRHFNDSGACVPRCPQPLVY 81
Query: 525 CQCQYQY 531
+ +Q
Sbjct: 82 NKLTFQL 88
Score = 32.0 bits (71), Expect = 0.072
Identities = 12/76 (15%), Positives = 16/76 (21%), Gaps = 10/76 (13%)
Query: 466 KSRCQYQCQYQCQYQCQYQCQCQC----------QCQCQCQCQCQYQYQYQYQYQYQYQY 515
K RC CQ + C QC QC Q + ++
Sbjct: 7 KGRCWGPGSEDCQTLTKTICAPQCNGHCFGPNPNQCCHDECAGGCSGPQDTDCFACRHFN 66
Query: 516 QYQCQCQCQCQCQYQY 531
Q
Sbjct: 67 DSGACVPRCPQPLVYN 82
Score = 32.0 bits (71), Expect = 0.083
Identities = 7/72 (9%), Positives = 13/72 (18%), Gaps = 1/72 (1%)
Query: 460 RREEKRKSRCQYQCQYQCQYQCQYQCQCQCQCQCQCQCQCQYQYQYQYQYQYQYQYQYQC 519
+ Q + Q + + QY + + Q
Sbjct: 57 TDCFACRHFNDSGACVPRCPQPLVYNKLTFQLEPNPHTKYQYGGVCVASCPHNF-VVDQT 115
Query: 520 QCQCQCQCQYQY 531
C C
Sbjct: 116 SCVRACPPDKME 127
Score = 31.6 bits (70), Expect = 0.088
Identities = 8/62 (12%), Positives = 14/62 (22%)
Query: 469 CQYQCQYQCQYQCQYQCQCQCQCQCQCQCQCQYQYQYQYQYQYQYQYQYQCQCQCQCQCQ 528
QC + Q C+ Q + +Q + + Q
Sbjct: 38 NPNQCCHDECAGGCSGPQDTDCFACRHFNDSGACVPRCPQPLVYNKLTFQLEPNPHTKYQ 97
Query: 529 YQ 530
Y
Sbjct: 98 YG 99
Score = 31.3 bits (69), Expect = 0.12
Identities = 6/64 (9%), Positives = 14/64 (21%)
Query: 467 SRCQYQCQYQCQYQCQYQCQCQCQCQCQCQCQCQYQYQYQYQYQYQYQYQYQCQCQCQCQ 526
++C + Q C+ Q + +Q + + Q
Sbjct: 40 NQCCHDECAGGCSGPQDTDCFACRHFNDSGACVPRCPQPLVYNKLTFQLEPNPHTKYQYG 99
Query: 527 CQYQ 530
Sbjct: 100 GVCV 103
Score = 31.3 bits (69), Expect = 0.14
Identities = 2/61 (3%), Positives = 3/61 (4%), Gaps = 1/61 (1%)
Query: 469 CQYQCQYQCQYQCQYQCQCQCQCQCQCQCQCQYQYQYQYQYQYQYQYQYQ-CQCQCQCQC 527
Q C
Sbjct: 77 QPLVYNKLTFQLEPNPHTKYQYGGVCVASCPHNFVVDQTSCVRACPPDKMEVDKNGLKMC 136
Query: 528 Q 528
+
Sbjct: 137 E 137
Score = 30.1 bits (66), Expect = 0.32
Identities = 11/65 (16%), Positives = 16/65 (24%)
Query: 467 SRCQYQCQYQCQYQCQYQCQCQCQCQCQCQCQCQYQYQYQYQYQYQYQYQYQCQCQCQCQ 526
C+ +C CQ + C QC C Q + Q C+
Sbjct: 4 EVCKGRCWGPGSEDCQTLTKTICAPQCNGHCFGPNPNQCCHDECAGGCSGPQDTDCFACR 63
Query: 527 CQYQY 531
Sbjct: 64 HFNDS 68
Score = 29.3 bits (64), Expect = 0.66
Identities = 10/60 (16%), Positives = 15/60 (25%), Gaps = 2/60 (3%)
Query: 473 CQYQCQYQCQYQCQCQCQCQCQCQC--QCQYQYQYQYQYQYQYQYQYQCQCQCQCQCQYQ 530
C C+ +C CQ + C QC Q + Q +
Sbjct: 2 CHEVCKGRCWGPGSEDCQTLTKTICAPQCNGHCFGPNPNQCCHDECAGGCSGPQDTDCFA 61
Score = 28.6 bits (62), Expect = 0.96
Identities = 5/66 (7%), Positives = 11/66 (16%), Gaps = 3/66 (4%)
Query: 469 CQYQCQYQCQYQCQYQCQCQCQCQCQCQCQCQYQYQYQYQYQYQYQYQYQCQC---QCQC 525
Q + C+ Q + +Q + + Q
Sbjct: 46 ECAGGCSGPQDTDCFACRHFNDSGACVPRCPQPLVYNKLTFQLEPNPHTKYQYGGVCVAS 105
Query: 526 QCQYQY 531
Sbjct: 106 CPHNFV 111
>d2dtge6 g.3.9.1 (E:157-311) Insulin receptor {Human (Homo sapiens)
[TaxId: 9606]}
Length = 155
Score = 34.3 bits (77), Expect = 0.013
Identities = 5/57 (8%), Positives = 13/57 (22%)
Query: 475 YQCQYQCQYQCQCQCQCQCQCQCQCQYQYQYQYQYQYQYQYQYQCQCQCQCQCQYQY 531
+ Y Q ++ + + + +C +C Y
Sbjct: 82 VETCPPPYYHFQDWRCVNFSFCQDLHHKCKNSRRQGCHQYVIHNNKCIPECPSGYTM 138
Score = 33.5 bits (75), Expect = 0.029
Identities = 7/63 (11%), Positives = 14/63 (22%), Gaps = 1/63 (1%)
Query: 466 KSRCQYQCQYQCQYQCQYQCQCQCQCQCQC-QCQCQYQYQYQYQYQYQYQYQYQCQCQCQ 524
+ C+ C +C C +C + + Y +
Sbjct: 37 PTICKSHGCTAEGLCCHSECLGNCSQPDDPTKCVACRNFYLDGRCVETCPPPYYHFQDWR 96
Query: 525 CQC 527
C
Sbjct: 97 CVN 99
Score = 32.7 bits (73), Expect = 0.048
Identities = 7/62 (11%), Positives = 12/62 (19%)
Query: 469 CQYQCQYQCQYQCQYQCQCQCQCQCQCQCQCQYQYQYQYQYQYQYQYQYQCQCQCQCQCQ 528
Q+ + CQ C C+ + C+
Sbjct: 16 TVINGQFVERCWTHSHCQKVCPTICKSHGCTAEGLCCHSECLGNCSQPDDPTKCVACRNF 75
Query: 529 YQ 530
Y
Sbjct: 76 YL 77
Score = 32.0 bits (71), Expect = 0.079
Identities = 7/66 (10%), Positives = 13/66 (19%), Gaps = 8/66 (12%)
Query: 470 QYQCQYQCQYQCQYQCQCQCQCQCQCQCQCQYQYQYQYQ-------YQYQYQYQYQCQCQ 522
Y Q + +C+ + C + + C
Sbjct: 89 YYHFQDWRCVNFSFCQDLHHKCKNSRRQGCHQYVIHNNKCIPECPSGYTMNSSNLLCT-P 147
Query: 523 CQCQCQ 528
C C
Sbjct: 148 CLGPCP 153
Score = 31.6 bits (70), Expect = 0.12
Identities = 8/63 (12%), Positives = 12/63 (19%)
Query: 469 CQYQCQYQCQYQCQYQCQCQCQCQCQCQCQCQYQYQYQYQYQYQYQYQYQCQCQCQCQCQ 528
Q +C CQ C C+ + C+
Sbjct: 14 PATVINGQFVERCWTHSHCQKVCPTICKSHGCTAEGLCCHSECLGNCSQPDDPTKCVACR 73
Query: 529 YQY 531
Y
Sbjct: 74 NFY 76
Score = 31.2 bits (69), Expect = 0.14
Identities = 7/62 (11%), Positives = 14/62 (22%)
Query: 469 CQYQCQYQCQYQCQYQCQCQCQCQCQCQCQCQYQYQYQYQYQYQYQYQYQCQCQCQCQCQ 528
C +C C C+ + Y +Q + +C+
Sbjct: 52 CHSECLGNCSQPDDPTKCVACRNFYLDGRCVETCPPPYYHFQDWRCVNFSFCQDLHHKCK 111
Query: 529 YQ 530
Sbjct: 112 NS 113
Score = 29.3 bits (64), Expect = 0.61
Identities = 8/71 (11%), Positives = 18/71 (25%), Gaps = 12/71 (16%)
Query: 473 CQYQCQYQCQYQCQCQCQCQCQC-----QCQCQYQYQYQYQ-------YQYQYQYQYQCQ 520
C +C C C+ +C Y + + + ++C+
Sbjct: 52 CHSECLGNCSQPDDPTKCVACRNFYLDGRCVETCPPPYYHFQDWRCVNFSFCQDLHHKCK 111
Query: 521 CQCQCQCQYQY 531
+ C
Sbjct: 112 NSRRQGCHQYV 122
Score = 29.3 bits (64), Expect = 0.78
Identities = 7/60 (11%), Positives = 10/60 (16%)
Query: 471 YQCQYQCQYQCQYQCQCQCQCQCQCQCQCQYQYQYQYQYQYQYQYQYQCQCQCQCQCQYQ 530
Q +C CQ + C +C C
Sbjct: 4 PGTAKGKTNCPATVINGQFVERCWTHSHCQKVCPTICKSHGCTAEGLCCHSECLGNCSQP 63
Score = 26.9 bits (58), Expect = 4.2
Identities = 7/60 (11%), Positives = 10/60 (16%)
Query: 469 CQYQCQYQCQYQCQYQCQCQCQCQCQCQCQCQYQYQYQYQYQYQYQYQYQCQCQCQCQCQ 528
Q +C CQ C + +C C
Sbjct: 6 TAKGKTNCPATVINGQFVERCWTHSHCQKVCPTICKSHGCTAEGLCCHSECLGNCSQPDD 65
>d1x1na1 c.1.8.1 (A:2-524) Amylomaltase MalQ {Potato (Solanum
tuberosum) [TaxId: 4113]}
Length = 523
Score = 35.1 bits (80), Expect = 0.019
Identities = 11/124 (8%), Positives = 27/124 (21%), Gaps = 11/124 (8%)
Query: 416 EDGLVKYLCGDKNFAEDRIRNGAKKLLKARSTTTQGRLDSFFTIRREEKRKSRCQYQCQY 475
+DGL+K + DR+ + + + + E K + +
Sbjct: 103 DDGLLKMEELPEPLPTDRVNYST--ISEIKDPLITKAAKRLLSSEGELKDQLENFRRDPN 160
Query: 476 QCQYQCQYQCQCQCQCQ---------CQCQCQCQYQYQYQYQYQYQYQYQYQCQCQCQCQ 526
+ + + + Q Q
Sbjct: 161 ISSWLEDAAYFAAIDNSVNTISWYDWPEPLKNRHLAALEEVYQSEKDFIDIFIAQQFLFQ 220
Query: 527 CQYQ 530
Q++
Sbjct: 221 RQWK 224
>d1igra3 g.3.9.1 (A:150-299) Type 1 insulin-like growth factor
receptor Cys-rich domain {Human (Homo sapiens) [TaxId:
9606]}
Length = 150
Score = 33.5 bits (75), Expect = 0.029
Identities = 8/63 (12%), Positives = 17/63 (26%)
Query: 469 CQYQCQYQCQYQCQYQCQCQCQCQCQCQCQCQYQYQYQYQYQYQYQYQYQCQCQCQCQCQ 528
+ + Y+C +CQ C C + + + C+
Sbjct: 14 EKTTINNEYNYRCWTTNRCQKMCPSTCGKRACTENNECCHPECLGSCSAPDNDTACVACR 73
Query: 529 YQY 531
+ Y
Sbjct: 74 HYY 76
Score = 31.5 bits (70), Expect = 0.12
Identities = 5/65 (7%), Positives = 10/65 (15%)
Query: 467 SRCQYQCQYQCQYQCQYQCQCQCQCQCQCQCQCQYQYQYQYQYQYQYQYQYQCQCQCQCQ 526
+ +C + C Y Y +C +
Sbjct: 41 GKRACTENNECCHPECLGSCSAPDNDTACVACRHYYYAGVCVPACPPNTYRFEGWRCVDR 100
Query: 527 CQYQY 531
Sbjct: 101 DFCAN 105
Score = 31.1 bits (69), Expect = 0.14
Identities = 5/67 (7%), Positives = 12/67 (17%), Gaps = 8/67 (11%)
Query: 473 CQYQCQYQCQYQCQCQCQCQCQ--------CQCQCQYQYQYQYQYQYQYQYQYQCQCQCQ 524
C +C C C+ Y+++ +
Sbjct: 52 CHPECLGSCSAPDNDTACVACRHYYYAGVCVPACPPNTYRFEGWRCVDRDFCANILSAES 111
Query: 525 CQCQYQY 531
+
Sbjct: 112 SDSEGFV 118
Score = 30.4 bits (67), Expect = 0.31
Identities = 2/60 (3%), Positives = 9/60 (15%)
Query: 469 CQYQCQYQCQYQCQYQCQCQCQCQCQCQCQCQYQYQYQYQYQYQYQYQYQCQCQCQCQCQ 528
Y+ + + + + + + C
Sbjct: 84 ACPPNTYRFEGWRCVDRDFCANILSAESSDSEGFVIHDGECMQECPSGFIRNGSQSMYCI 143
Score = 28.8 bits (63), Expect = 0.87
Identities = 7/74 (9%), Positives = 15/74 (20%), Gaps = 14/74 (18%)
Query: 472 QCQYQC---QYQCQYQCQCQCQC-----------QCQCQCQCQYQYQYQYQYQYQYQYQY 517
+CQ C + +C C++ Y Y
Sbjct: 31 RCQKMCPSTCGKRACTENNECCHPECLGSCSAPDNDTACVACRHYYYAGVCVPACPPNTY 90
Query: 518 QCQCQCQCQCQYQY 531
+ + +
Sbjct: 91 RFEGWRCVDRDFCA 104
Score = 26.5 bits (57), Expect = 6.2
Identities = 2/47 (4%), Positives = 8/47 (17%)
Query: 475 YQCQYQCQYQCQCQCQCQCQCQCQCQYQYQYQYQYQYQYQYQYQCQC 521
Y+ + + + + +C
Sbjct: 82 VPACPPNTYRFEGWRCVDRDFCANILSAESSDSEGFVIHDGECMQEC 128
Score = 26.1 bits (56), Expect = 6.3
Identities = 7/69 (10%), Positives = 14/69 (20%), Gaps = 8/69 (11%)
Query: 471 YQCQYQCQYQCQYQCQC-------QCQCQCQCQC-QCQYQYQYQYQYQYQYQYQYQCQCQ 522
+ + C+ +CQ C C + + +
Sbjct: 7 MEEKPMCEKTTINNEYNYRCWTTNRCQKMCPSTCGKRACTENNECCHPECLGSCSAPDND 66
Query: 523 CQCQCQYQY 531
C Y
Sbjct: 67 TACVACRHY 75
>d1cmwa1 a.60.7.1 (A:174-289) 5' to 3' exonuclease domain of DNA
polymerase Taq {Thermus aquaticus [TaxId: 271]}
Length = 116
Score = 32.5 bits (73), Expect = 0.039
Identities = 20/59 (33%), Positives = 33/59 (55%), Gaps = 4/59 (6%)
Query: 127 EEFIDLCILLGCDYCDSIRG---IGPKRAIELIKEHRSIEKILENIDTKKYTVPEGWLY 182
+++ D L G D D++ G IG K A +L++E S+E +L+N+D K + E L
Sbjct: 4 DQWADYRALTG-DESDNLPGVKGIGEKTARKLLEEWGSLEALLKNLDRLKPAIREKILA 61
Score = 32.1 bits (72), Expect = 0.055
Identities = 21/77 (27%), Positives = 33/77 (42%), Gaps = 4/77 (5%)
Query: 232 FIDLCILLGCDYCDSIRG---IGPKRAIELIKEHRSIEKILENIDTKKYTVPEGWLYKEA 288
+ D L G D D++ G IG K A +L++E S+E +L+N+D K + E L
Sbjct: 6 WADYRALTG-DESDNLPGVKGIGEKTARKLLEEWGSLEALLKNLDRLKPAIREKILAHMD 64
Query: 289 RELFRHPEIADPETIEL 305
+ L
Sbjct: 65 DLKLSWDLAKVRTDLPL 81
>d1pzna1 a.60.4.1 (A:35-95) DNA repair protein Rad51, N-terminal
domain {Archaeon Pyrococcus furiosus [TaxId: 2261]}
Length = 61
Score = 30.8 bits (70), Expect = 0.047
Identities = 11/63 (17%), Positives = 22/63 (34%), Gaps = 21/63 (33%)
Query: 215 DSIRGIGPKRAIELLYSFI------------DLCILLGCDYCDSIRGIGPKRAIELIKEH 262
+ + G+GP A +L + +L + GI A+++I+
Sbjct: 4 EDLPGVGPATAEKLREAGYDTLEAIAVASPIELK---------EVAGISEGTALKIIQAA 54
Query: 263 RSI 265
R
Sbjct: 55 RKA 57
Score = 30.4 bits (69), Expect = 0.061
Identities = 7/27 (25%), Positives = 14/27 (51%), Gaps = 1/27 (3%)
Query: 142 DSIRGIGPKRAIELIKEH-RSIEKILE 167
+ + G+GP A +L + ++E I
Sbjct: 4 EDLPGVGPATAEKLREAGYDTLEAIAV 30
Score = 30.4 bits (69), Expect = 0.061
Identities = 7/27 (25%), Positives = 14/27 (51%), Gaps = 1/27 (3%)
Query: 245 DSIRGIGPKRAIELIKEH-RSIEKILE 270
+ + G+GP A +L + ++E I
Sbjct: 4 EDLPGVGPATAEKLREAGYDTLEAIAV 30
>d2i1qa1 a.60.4.1 (A:5-64) DNA repair protein Rad51, N-terminal
domain {Archaeon Methanococcus voltae [TaxId: 2188]}
Length = 60
Score = 30.1 bits (68), Expect = 0.081
Identities = 14/57 (24%), Positives = 25/57 (43%), Gaps = 3/57 (5%)
Query: 215 DSIRGIGPKRAIELL-YSFIDLCILLGCDYCD--SIRGIGPKRAIELIKEHRSIEKI 268
+ G+GP A +L+ +ID + + I GI K A ++I R + +
Sbjct: 2 TDLPGVGPSTAEKLVEAGYIDFMKIATATVGELTDIEGISEKAAAKMIMGARDLCDL 58
Score = 28.9 bits (65), Expect = 0.18
Identities = 7/27 (25%), Positives = 12/27 (44%), Gaps = 1/27 (3%)
Query: 142 DSIRGIGPKRAIELIKEH-RSIEKILE 167
+ G+GP A +L++ KI
Sbjct: 2 TDLPGVGPSTAEKLVEAGYIDFMKIAT 28
>d2b5ua2 b.110.1.1 (A:84-315) Colicin E3 N-terminal domain
{Escherichia coli [TaxId: 562]}
Length = 232
Score = 32.5 bits (74), Expect = 0.089
Identities = 7/38 (18%), Positives = 15/38 (39%), Gaps = 3/38 (7%)
Query: 365 EHGLKPIYVFDGKPPTLKSGELNKRM-EKREDAQKALA 401
+ G +YV + ++ +R E+ Q+ A
Sbjct: 194 DSGHNAVYVSVSDVLS--PDQVKQRQDEENRRQQEWDA 229
>d1o0ea_ d.3.1.1 (A:) Ervatamin C {East indian rosebay (Ervatamia
coronaria) [TaxId: 52861]}
Length = 208
Score = 32.3 bits (72), Expect = 0.11
Identities = 8/64 (12%), Positives = 12/64 (18%)
Query: 468 RCQYQCQYQCQYQCQYQCQCQCQCQCQCQCQCQYQYQYQYQYQYQYQYQYQCQCQCQCQC 527
+ + Q C + YQY Q CQ
Sbjct: 39 QIRTGNLISLSEQELVDCDKKNHGCLGGAFVFAYQYIINNGGIDTQANYPYKAVQGPCQA 98
Query: 528 QYQY 531
+
Sbjct: 99 ASKV 102
>d2a1jb1 a.60.2.5 (B:219-296) DNA excision repair protein ERCC-1
{Human (Homo sapiens) [TaxId: 9606]}
Length = 78
Score = 29.9 bits (67), Expect = 0.12
Identities = 10/48 (20%), Positives = 20/48 (41%), Gaps = 2/48 (4%)
Query: 215 DSIRGIGPKRAIELLYSFIDLCILLGCDYC--DSIRGIGPKRAIELIK 260
+++ + + LL +F L L+ G+GP++A L
Sbjct: 22 TTVKSVNKTDSQTLLTTFGSLEQLIAASREDLALCPGLGPQKARRLFD 69
Score = 28.4 bits (63), Expect = 0.43
Identities = 8/50 (16%), Positives = 21/50 (42%), Gaps = 1/50 (2%)
Query: 142 DSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGWLYKEARELFRH 191
+++ + + L+ S+E++ + + G ++AR LF
Sbjct: 22 TTVKSVNKTDSQTLLTTFGSLEQL-IAASREDLALCPGLGPQKARRLFDV 70
Score = 28.4 bits (63), Expect = 0.43
Identities = 8/50 (16%), Positives = 21/50 (42%), Gaps = 1/50 (2%)
Query: 245 DSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGWLYKEARELFRH 294
+++ + + L+ S+E++ + + G ++AR LF
Sbjct: 22 TTVKSVNKTDSQTLLTTFGSLEQL-IAASREDLALCPGLGPQKARRLFDV 70
>d2bcqa2 a.60.12.1 (A:329-385) DNA polymerase lambda {Human (Homo
sapiens) [TaxId: 9606]}
Length = 57
Score = 29.2 bits (66), Expect = 0.17
Identities = 9/29 (31%), Positives = 13/29 (44%), Gaps = 1/29 (3%)
Query: 143 SIRGIGPKRAIELIKEH-RSIEKILENID 170
+I G G K A ++ RS+E I
Sbjct: 12 NIWGAGTKTAQMWYQQGFRSLEDIRSQAS 40
Score = 29.2 bits (66), Expect = 0.17
Identities = 9/29 (31%), Positives = 13/29 (44%), Gaps = 1/29 (3%)
Query: 246 SIRGIGPKRAIELIKEH-RSIEKILENID 273
+I G G K A ++ RS+E I
Sbjct: 12 NIWGAGTKTAQMWYQQGFRSLEDIRSQAS 40
>d1psya_ a.52.1.3 (A:) 2S albumin RicC3 {Castor bean (Ricinus
communis) [TaxId: 3988]}
Length = 125
Score = 30.3 bits (68), Expect = 0.23
Identities = 15/88 (17%), Positives = 25/88 (28%), Gaps = 12/88 (13%)
Query: 450 QGRLDSFFTIRREEKRKSRCQYQCQYQCQYQCQYQCQCQCQCQCQCQCQCQYQYQYQYQY 509
R +R + + Q QC C Q + +CQC+ Q Q
Sbjct: 39 SRRSTGEEVLRMPGDENQQQESQQLQQC---CNQVKQVRDECQCEAIKYIAEDQIQQGQL 95
Query: 510 QYQYQYQ---------YQCQCQCQCQCQ 528
+ + C +C Q +
Sbjct: 96 HGEESERVAQRAGEIVSSCGVRCMRQTR 123
>d2a1ja1 a.60.2.5 (A:837-898) DNA repair endonuclease XPF {Human
(Homo sapiens) [TaxId: 9606]}
Length = 62
Score = 29.0 bits (65), Expect = 0.23
Identities = 5/29 (17%), Positives = 13/29 (44%)
Query: 139 DYCDSIRGIGPKRAIELIKEHRSIEKILE 167
D+ + G+ K L+ ++I ++
Sbjct: 3 DFLLKMPGVNAKNCRSLMHHVKNIAELAA 31
Score = 29.0 bits (65), Expect = 0.23
Identities = 5/29 (17%), Positives = 13/29 (44%)
Query: 242 DYCDSIRGIGPKRAIELIKEHRSIEKILE 270
D+ + G+ K L+ ++I ++
Sbjct: 3 DFLLKMPGVNAKNCRSLMHHVKNIAELAA 31
Score = 27.8 bits (62), Expect = 0.51
Identities = 6/51 (11%), Positives = 18/51 (35%)
Query: 212 DYCDSIRGIGPKRAIELLYSFIDLCILLGCDYCDSIRGIGPKRAIELIKEH 262
D+ + G+ K L++ ++ L + +G + + +
Sbjct: 3 DFLLKMPGVNAKNCRSLMHHVKNIAELAALSQDELTSILGNAANAKQLYDF 53
>d1bvsa2 a.60.2.1 (A:64-134) DNA helicase RuvA subunit, middle
domain {Mycobacterium leprae [TaxId: 1769]}
Length = 71
Score = 28.9 bits (65), Expect = 0.27
Identities = 13/52 (25%), Positives = 22/52 (42%), Gaps = 7/52 (13%)
Query: 216 SIRGIGPKRAIELLYSFIDLCILLGCDYCD------SIRGIGPKRAIELIKE 261
S+ G+GP+ A+ L + D L + GIG + A ++ E
Sbjct: 13 SVSGVGPRLAMATL-AVHDAAALRQALADSDVASLTRVPGIGRRGAERIVLE 63
>d2fmpa2 a.60.12.1 (A:92-148) DNA polymerase beta {Human (Homo
sapiens) [TaxId: 9606]}
Length = 57
Score = 28.0 bits (63), Expect = 0.34
Identities = 9/29 (31%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
Query: 143 SIRGIGPKRAIELIKE-HRSIEKILENID 170
+ GIGP A + + E +++E + +N D
Sbjct: 11 RVSGIGPSAARKFVDEGIKTLEDLRKNED 39
Score = 28.0 bits (63), Expect = 0.34
Identities = 9/29 (31%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
Query: 246 SIRGIGPKRAIELIKE-HRSIEKILENID 273
+ GIGP A + + E +++E + +N D
Sbjct: 11 RVSGIGPSAARKFVDEGIKTLEDLRKNED 39
>d1jmsa3 a.60.12.1 (A:243-302) Terminal deoxynucleotidyl transferase
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 60
Score = 28.1 bits (63), Expect = 0.38
Identities = 8/31 (25%), Positives = 16/31 (51%), Gaps = 1/31 (3%)
Query: 143 SIRGIGPKRAIELIKEH-RSIEKILENIDTK 172
S+ G+G K A + + R++ KI + +
Sbjct: 12 SVFGVGLKTAEKWFRMGFRTLSKIQSDKSLR 42
Score = 28.1 bits (63), Expect = 0.38
Identities = 8/31 (25%), Positives = 16/31 (51%), Gaps = 1/31 (3%)
Query: 246 SIRGIGPKRAIELIKEH-RSIEKILENIDTK 275
S+ G+G K A + + R++ KI + +
Sbjct: 12 SVFGVGLKTAEKWFRMGFRTLSKIQSDKSLR 42
>d1m6ba4 g.3.9.1 (A:480-580) Receptor protein-tyrosine kinase Erbb-3
Cys-rich domains {Human (Homo sapiens) [TaxId: 9606]}
Length = 101
Score = 29.0 bits (64), Expect = 0.38
Identities = 7/66 (10%), Positives = 15/66 (22%), Gaps = 6/66 (9%)
Query: 464 KRKSRCQYQCQYQCQYQCQYQCQCQCQ------CQCQCQCQCQYQYQYQYQYQYQYQYQY 517
R C C + ++ + +C + C ++
Sbjct: 26 SRGGVCVTHCNFLNGEPREFAHEAECFSCHPECQPMEGTATCNGSGSDTCAQCAHFRDGP 85
Query: 518 QCQCQC 523
C C
Sbjct: 86 HCVSSC 91
Score = 27.1 bits (59), Expect = 1.9
Identities = 6/50 (12%), Positives = 13/50 (26%)
Query: 476 QCQYQCQYQCQCQCQCQCQCQCQCQYQYQYQYQYQYQYQYQYQCQCQCQC 525
QC Y C C ++ ++ + + + C
Sbjct: 18 QCLSCRNYSRGGVCVTHCNFLNGEPREFAHEAECFSCHPECQPMEGTATC 67
Score = 25.5 bits (55), Expect = 7.5
Identities = 4/64 (6%), Positives = 13/64 (20%)
Query: 467 SRCQYQCQYQCQYQCQYQCQCQCQCQCQCQCQCQYQYQYQYQYQYQYQYQYQCQCQCQCQ 526
+ C + ++ + +C + ++ C C
Sbjct: 33 THCNFLNGEPREFAHEAECFSCHPECQPMEGTATCNGSGSDTCAQCAHFRDGPHCVSSCP 92
Query: 527 CQYQ 530
Sbjct: 93 HGVL 96
>d1wj3a_ b.1.2.1 (A:) Contactin 3 (KIAA1496) {Human (Homo sapiens)
[TaxId: 9606]}
Length = 117
Score = 29.3 bits (64), Expect = 0.46
Identities = 5/48 (10%), Positives = 12/48 (25%)
Query: 469 CQYQCQYQCQYQCQYQCQCQCQCQCQCQCQCQYQYQYQYQYQYQYQYQ 516
Y+ Y+ Q Q + + + Y + +
Sbjct: 43 AMENESEVTGYKVFYRTSSQNNVQVLNTNKTSAELVLPIKEDYIIEVK 90
Score = 27.8 bits (60), Expect = 1.3
Identities = 5/45 (11%), Positives = 12/45 (26%)
Query: 468 RCQYQCQYQCQYQCQYQCQCQCQCQCQCQCQCQYQYQYQYQYQYQ 512
Y+ Y+ Q Q + + + Y + +
Sbjct: 46 NESEVTGYKVFYRTSSQNNVQVLNTNKTSAELVLPIKEDYIIEVK 90
>d1ixra1 a.60.2.1 (A:63-135) DNA helicase RuvA subunit, middle
domain {Thermus thermophilus [TaxId: 274]}
Length = 73
Score = 28.1 bits (63), Expect = 0.49
Identities = 15/52 (28%), Positives = 23/52 (44%), Gaps = 7/52 (13%)
Query: 216 SIRGIGPKRAIELLYSFIDLCILLGCDYCD------SIRGIGPKRAIELIKE 261
S+ G+GPK A+ LL S + +L S G+G + A + E
Sbjct: 14 SVSGVGPKVALALL-SALPPRLLARALLEGDARLLTSASGVGRRLAERIALE 64
>d1gqea_ e.38.1.1 (A:) Polypeptide chain release factor 2 (RF2)
{Escherichia coli [TaxId: 562]}
Length = 362
Score = 30.4 bits (68), Expect = 0.56
Identities = 15/112 (13%), Positives = 33/112 (29%), Gaps = 11/112 (9%)
Query: 252 PKRAIELIKEHRSIEKILENIDTKKYTVPEGWLYKEARELFRHPEIADPETIELVADVAP 311
P+RA L KE S+E +++ +D + + ++ E+A E + A
Sbjct: 47 PERAQALGKERSSLEAVVDTLDQ---------MKQGLEDVSGLLELAVEADDEETFNEAV 97
Query: 312 SSIRESRKICIDASMSLYQFLIAVRSEGNQLM--SVDGEPTSHLMGTFYRTI 361
+ + + ++ + G R
Sbjct: 98 AELDALEEKLAQLEFRRMFSGEYDSADCYLDIQAGSGGTEAQDWASMLERMY 149
Score = 26.5 bits (58), Expect = 9.3
Identities = 14/58 (24%), Positives = 23/58 (39%)
Query: 149 PKRAIELIKEHRSIEKILENIDTKKYTVPEGWLYKEARELFRHPEVADPETIEFIDLC 206
P+RA L KE S+E +++ +D K + + E E + E L
Sbjct: 47 PERAQALGKERSSLEAVVDTLDQMKQGLEDVSGLLELAVEADDEETFNEAVAELDALE 104
>d1mvha_ b.85.7.1 (A:) SET domain of Clr4 {Fission yeast
(Schizosaccharomyces pombe) [TaxId: 4896]}
Length = 269
Score = 30.2 bits (67), Expect = 0.62
Identities = 11/59 (18%), Positives = 19/59 (32%), Gaps = 9/59 (15%)
Query: 481 CQYQCQCQCQCQCQCQCQCQYQYQYQYQYQYQYQYQ-------YQCQCQCQC--QCQYQ 530
C C +C+C + Y Q + + Y+C C C +C +
Sbjct: 70 CSSLGGCDLNNPSRCECLDDLDEPTHFAYDAQGRVRADTGAVIYECNSFCSCSMECPNR 128
>d1lgpa_ b.26.1.2 (A:) Cell cycle checkpoint protein Chfr {Human
(Homo sapiens) [TaxId: 9606]}
Length = 113
Score = 28.3 bits (62), Expect = 0.85
Identities = 9/71 (12%), Positives = 15/71 (21%), Gaps = 1/71 (1%)
Query: 435 RNGAKKLLKARSTTTQGRLDSFFTIRREEKRKSRCQYQCQYQCQYQCQYQCQCQCQCQCQ 494
G +L + T GR K S + + Q +
Sbjct: 13 EEGEPHVLLRKREWTIGRRRGCDLSFPSNKLVSGDHCRIVV-DEKSGQVTLEDTSTSGTV 71
Query: 495 CQCQCQYQYQY 505
+ Q
Sbjct: 72 INKLKVVKKQT 82
>d2f23a1 a.2.1.1 (A:3-77) GreA transcript cleavage protein,
N-terminal domain {Thermus thermophilus [TaxId: 274]}
Length = 75
Score = 27.0 bits (60), Expect = 1.2
Identities = 13/61 (21%), Positives = 25/61 (40%), Gaps = 5/61 (8%)
Query: 385 ELNKRMEKREDAQKALAKAQEQGKLKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKA 444
+L + E+ ++A K L + E +D ++ +K E RI + L +A
Sbjct: 16 QLERERERLQEATKILQELMESSDDY-----DDSGLEAAKQEKARIEARIDSLEDILSRA 70
Query: 445 R 445
Sbjct: 71 V 71
>d1s78a4 g.3.9.1 (A:489-564) Protooncoprotein Her2 extracellular
domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 76
Score = 27.0 bits (59), Expect = 1.4
Identities = 10/59 (16%), Positives = 17/59 (28%), Gaps = 3/59 (5%)
Query: 468 RCQYQCQYQCQYQCQYQCQCQCQCQCQCQCQCQYQYQYQYQYQYQYQYQYQCQCQCQCQ 526
C QC Q+ +C +C Q + ++ +CQ Q
Sbjct: 9 HCWGPGPTQCVNCSQFLRGQECVEEC---RVLQGLPREYVNARHCLPCHPECQPQNGSV 64
>d2p6ra2 a.289.1.2 (A:489-686) Hel308 helicase {Archaeoglobus
fulgidus [TaxId: 2234]}
Length = 198
Score = 28.3 bits (63), Expect = 1.8
Identities = 21/112 (18%), Positives = 40/112 (35%), Gaps = 20/112 (17%)
Query: 73 VKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVLEGMELSHEEFIDL 132
+ G + E + L+ N + + + L E++ G+ EE ++L
Sbjct: 97 IAPGDLRRIV-ETAEWLSNAMNRIAEEVGNTSVSGL------TERIKHGV---KEELLEL 146
Query: 133 CILLGCDYCDSIRGIGPKRAIELIKEH-RSIEKILENIDTKKYTVPEGWLYK 183
IR IG RA +L R+ E I+ + + + G +
Sbjct: 147 V---------RIRHIGRVRARKLYNAGIRNAEDIVRHREKVASLIGRGIAER 189
>d1gm5a2 b.40.4.9 (A:106-285) RecG "wedge" domain {Thermotoga
maritima [TaxId: 2336]}
Length = 180
Score = 27.5 bits (60), Expect = 3.1
Identities = 10/35 (28%), Positives = 15/35 (42%), Gaps = 4/35 (11%)
Query: 215 DSIRGIGPKRAIEL----LYSFIDLCILLGCDYCD 245
+G+GP R +L + + DL DY D
Sbjct: 13 QYAKGVGPNRKKKLKKLGIETLRDLLEFFPRDYED 47
>d1xkga1 d.3.1.1 (A:4-305) Major mite fecal allergen der p 1
{House-dust mite (Dermatophagoides pteronyssinus)
[TaxId: 6956]}
Length = 302
Score = 27.7 bits (60), Expect = 3.1
Identities = 9/64 (14%), Positives = 13/64 (20%)
Query: 468 RCQYQCQYQCQYQCQYQCQCQCQCQCQCQCQCQYQYQYQYQYQYQYQYQYQCQCQCQCQC 527
Y Q C Q C + Q+ Q Y + C
Sbjct: 121 ESAYLAYRDQSLDLAEQELVDCASQHGCHGDTIPRGIEYIQHNGVVQESYYRYVAREQSC 180
Query: 528 QYQY 531
+
Sbjct: 181 RRPN 184
Score = 27.7 bits (60), Expect = 3.4
Identities = 8/63 (12%), Positives = 14/63 (22%)
Query: 469 CQYQCQYQCQYQCQYQCQCQCQCQCQCQCQCQYQYQYQYQYQYQYQYQYQCQCQCQCQCQ 528
Q C Q C + Q+ Q Y + C+
Sbjct: 126 AYRDQSLDLAEQELVDCASQHGCHGDTIPRGIEYIQHNGVVQESYYRYVAREQSCRRPNA 185
Query: 529 YQY 531
++
Sbjct: 186 QRF 188
>d1t6ex_ b.50.1.2 (X:) Xylanase inhibitor TAXI-I {Wheat (Triticum
aestivum) [TaxId: 4565]}
Length = 381
Score = 27.7 bits (60), Expect = 3.6
Identities = 5/34 (14%), Positives = 6/34 (17%)
Query: 472 QCQYQCQYQCQYQCQCQCQCQCQCQCQCQYQYQY 505
C Y C + Y Y
Sbjct: 54 TCLLANAYPAPGCPAPSCGSDKHDKPCTAYPYNP 87
>d2hhma_ e.7.1.1 (A:) Inositol monophosphatase {Human (Homo sapiens)
[TaxId: 9606]}
Length = 272
Score = 27.3 bits (59), Expect = 4.5
Identities = 13/145 (8%), Positives = 32/145 (22%), Gaps = 7/145 (4%)
Query: 393 REDAQKALAKAQEQGKLKWSDPDEDGLVKYLCGDKNF-------AEDRIRNGAKKLLKAR 445
+E A+ A++ G++ + V + E + + K+ +
Sbjct: 2 QECMDYAVTLARQAGEVVCEAIKNEMNVMLKSSPVDLVTATDQKVEKMLISSIKEKYPSH 61
Query: 446 STTTQGRLDSFFTIRREEKRKSRCQYQCQYQCQYQCQYQCQCQCQCQCQCQCQCQYQYQY 505
S + + + + + + Y
Sbjct: 62 SFIGEESVAAGEKSILTDNPTWIIDPIDGTTNFVHRFPFVAVSIGFAVNKKIEFGVVYSC 121
Query: 506 QYQYQYQYQYQYQCQCQCQCQCQYQ 530
Y + C Q Q
Sbjct: 122 VEGKMYTARKGKGAFCNGQKLQVSQ 146
>d2b3tb1 e.38.1.1 (B:7-354) Peptide chain release factor 1, RF1
{Escherichia coli [TaxId: 562]}
Length = 344
Score = 27.4 bits (60), Expect = 4.5
Identities = 6/48 (12%), Positives = 18/48 (37%), Gaps = 3/48 (6%)
Query: 252 PKRAIELIKEHRSIEKILENIDTKKYTVPEGWLYKEARELFRHPEIAD 299
+R L +E+ + + + + + A+ + PE+ +
Sbjct: 22 QERFRALSREYAQLSDVSRCFTDWQQVQED---IETAQMMLDDPEMRE 66
Score = 26.6 bits (58), Expect = 8.3
Identities = 6/48 (12%), Positives = 18/48 (37%), Gaps = 3/48 (6%)
Query: 149 PKRAIELIKEHRSIEKILENIDTKKYTVPEGWLYKEARELFRHPEVAD 196
+R L +E+ + + + + + A+ + PE+ +
Sbjct: 22 QERFRALSREYAQLSDVSRCFTDWQQVQED---IETAQMMLDDPEMRE 66
>d1h7na_ c.1.10.3 (A:) 5-aminolaevulinate dehydratase, ALAD
(porphobilinogen synthase) {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 340
Score = 27.2 bits (60), Expect = 4.8
Identities = 5/55 (9%), Positives = 12/55 (21%), Gaps = 1/55 (1%)
Query: 476 QCQYQCQYQCQ-CQCQCQCQCQCQCQYQYQYQYQYQYQYQYQYQCQCQCQCQCQY 529
+ + C C C+ C Y + + + +
Sbjct: 121 EYFPELYIICDVCLCEYTSHGHCGVLYDDGTINRERSVSRLAAVAVNYAKAGAHC 175
>d1tvda_ b.1.1.1 (A:) T-cell antigen receptor {Human (Homo sapiens),
delta-chain [TaxId: 9606]}
Length = 116
Score = 26.0 bits (56), Expect = 5.4
Identities = 6/64 (9%), Positives = 9/64 (14%)
Query: 468 RCQYQCQYQCQYQCQYQCQCQCQCQCQCQCQCQYQYQYQYQYQYQYQYQYQCQCQCQCQC 527
C Y Y Y+ + Q + Q
Sbjct: 21 LCTYDTVYSNPDLFWYRIRPDYSFQFVFYGDDSRSEGADFTQGRFSVKHILTQKAFHLVI 80
Query: 528 QYQY 531
Sbjct: 81 SPVR 84
>d1uj8a1 a.159.5.1 (A:13-76) Iron-sulfur cluster assembly protein
IscX {Escherichia coli [TaxId: 562]}
Length = 64
Score = 25.0 bits (55), Expect = 5.5
Identities = 7/22 (31%), Positives = 14/22 (63%), Gaps = 2/22 (9%)
Query: 185 ARELF-RHPEVADPETIEFIDL 205
L+ +P++ DP+T+ F D+
Sbjct: 11 GEALYDAYPDL-DPKTVRFTDM 31
>d1rm6b2 d.145.1.3 (B:1-216) 4-hydroxybenzoyl-CoA reductase beta
subunit HrcB, N-terminal domain {Thauera aromatica
[TaxId: 59405]}
Length = 216
Score = 26.9 bits (59), Expect = 5.8
Identities = 14/63 (22%), Positives = 26/63 (41%)
Query: 68 QCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVLEGMELSHE 127
+C +VK+ + YAT D+ + + + R +PV + E E + L
Sbjct: 145 KCHVIVKSDRCYATYHGDVAPALMVLDARAEIVGPAGKRTVPVAQLFRESGAEHLTLEKG 204
Query: 128 EFI 130
E +
Sbjct: 205 ELL 207
>d1cuka2 a.60.2.1 (A:65-142) DNA helicase RuvA subunit, middle
domain {Escherichia coli [TaxId: 562]}
Length = 78
Score = 25.2 bits (55), Expect = 6.5
Identities = 15/52 (28%), Positives = 22/52 (42%), Gaps = 7/52 (13%)
Query: 216 SIRGIGPKRAIELLYSFIDLCILLGCDYCD------SIRGIGPKRAIELIKE 261
G+GPK A+ +L S + + + + GIG K A LI E
Sbjct: 13 KTNGVGPKLALAIL-SGMSAQQFVNAVEREEVGALVKLPGIGKKTAERLIVE 63
>d1mt5a_ c.117.1.1 (A:) Fatty acid amide hydrolase (oleamide
hydrolase) {Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 537
Score = 27.0 bits (58), Expect = 6.5
Identities = 12/156 (7%), Positives = 21/156 (13%), Gaps = 18/156 (11%)
Query: 384 GELNKRMEKREDAQKALAKAQEQGKLKWSDPDEDGL---VKYLCGDKNFAEDRIRNGAKK 440
N D + L++A QG L G+ +K K G
Sbjct: 73 KGTNCVTSYLTDCETQLSQAPRQGLL-------YGVPVSLKECFSYKGH---DSTLGLSL 122
Query: 441 LLKAR----STTTQGRLDSFFTIRREEKRKSRCQYQCQYQCQYQCQYQCQCQCQCQCQCQ 496
Q + +
Sbjct: 123 NEGMPSESDCVVVQVLKLQGAVPFVHTNVPQSMLSFDCSNPLFGQTMNPWKSSKSPGGSS 182
Query: 497 C-QCQYQYQYQYQYQYQYQYQYQCQCQCQCQCQYQY 531
+ +
Sbjct: 183 GGEGALIGSGGSPLGLGTDIGGSIRFPSAFCGICGL 218
>d2q02a1 c.1.15.4 (A:1-271) Putative cytoplasmic protein STM4435
{Salmonella typhimurium [TaxId: 90371]}
Length = 271
Score = 26.8 bits (58), Expect = 7.0
Identities = 13/92 (14%), Positives = 29/92 (31%), Gaps = 7/92 (7%)
Query: 123 ELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGWLY 182
LS E F L L + + +R P ++ + + + E + T+ + +
Sbjct: 17 GLSIEAFFRLVKRLEFNKVE-LRNDMPSGSVTDDLNYNQVRNLAEKYGLEIVTINAVYPF 75
Query: 183 KEARELFRHPEVADPETIEFIDLCILLGCDYC 214
+ E +T + +G
Sbjct: 76 NQLTEEVVK------KTEGLLRDAQGVGARAL 101
>d1u7na_ c.77.1.4 (A:) Fatty acid/phospholipid synthesis protein
PlsX {Enterococcus faecalis [TaxId: 1351]}
Length = 329
Score = 26.9 bits (59), Expect = 7.1
Identities = 11/51 (21%), Positives = 24/51 (47%), Gaps = 11/51 (21%)
Query: 116 EKVLEGMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIE-LIKEHRSIEKI 165
+ ++EG+ L+ ++F D+ L G + I+ I + ++I I
Sbjct: 15 QAIVEGVMLAKQDFPDIEFQL----------YGKEAEIKKYITDEKNITII 55
>d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal
(G) domain {Thermus thermophilus [TaxId: 274]}
Length = 276
Score = 26.6 bits (58), Expect = 7.3
Identities = 13/65 (20%), Positives = 26/65 (40%), Gaps = 1/65 (1%)
Query: 384 GELNKRMEKREDAQKALAKAQEQGKLKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLK 443
G + + E+ + E+ +D DE+ ++KYL G+ E+ + +K
Sbjct: 187 GTDIREIPIPEEYLDQAREYHEKLVEVAADFDENIMLKYLEGE-EPTEEELVAAIRKGTI 245
Query: 444 ARSTT 448
T
Sbjct: 246 DLKIT 250
>d1yt8a3 c.46.1.2 (A:373-529) Thiosulfate sulfurtransferase PA2603
{Pseudomonas aeruginosa [TaxId: 287]}
Length = 157
Score = 26.1 bits (56), Expect = 7.5
Identities = 2/58 (3%), Positives = 9/58 (15%)
Query: 461 REEKRKSRCQYQCQYQCQYQCQYQCQCQCQCQCQCQCQCQYQYQYQYQYQYQYQYQYQ 518
++ Q + + C ++ +
Sbjct: 27 TASANYAKRHIPGAAWVLRSQLKQALERLGTAERYVLTCGSSLLARFAVAEVQALSGK 84
>d1nqla4 g.3.9.1 (A:481-614) EGF receptor Cys-rich domains {Human
(Homo sapiens) [TaxId: 9606]}
Length = 134
Score = 26.1 bits (56), Expect = 7.9
Identities = 8/59 (13%), Positives = 16/59 (27%), Gaps = 7/59 (11%)
Query: 469 CQYQCQYQCQYQCQYQCQCQCQCQCQCQCQCQYQYQYQYQYQYQYQYQYQCQCQCQCQC 527
C C +C +C+ + + + + QC +C Q
Sbjct: 11 CWGPEPRDCVSCRNVSRGRECVDKCKL-------LEGEPREFVENSECIQCHPECLPQA 62
Score = 25.7 bits (55), Expect = 9.2
Identities = 8/62 (12%), Positives = 14/62 (22%), Gaps = 1/62 (1%)
Query: 470 QYQCQYQCQYQCQYQCQCQCQCQCQCQCQCQYQYQYQYQYQYQYQYQYQCQCQCQCQCQY 529
+ + + + QC +C Q Q + Y C C
Sbjct: 37 LLEGEPREFVENSECIQCHPECLPQAMNITCTGRGPDNCIQCAH-YIDGPHCVKTCPAGV 95
Query: 530 QY 531
Sbjct: 96 MG 97
>d1grja1 a.2.1.1 (A:2-79) GreA transcript cleavage protein,
N-terminal domain {Escherichia coli [TaxId: 562]}
Length = 78
Score = 24.7 bits (54), Expect = 9.6
Identities = 18/62 (29%), Positives = 30/62 (48%), Gaps = 6/62 (9%)
Query: 385 ELNK-RMEKREDAQKALAKAQEQGKLKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLK 443
EL+ + +R + A+A+A+E G LK E+ + F E RI++ KL
Sbjct: 16 ELDFLKSVRRPEIIAAIAEAREHGDLK-----ENAEYHAAREQQGFCEGRIKDIEAKLSN 70
Query: 444 AR 445
A+
Sbjct: 71 AQ 72
>d1rjuv_ g.46.1.1 (V:) Metallothionein {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 36
Score = 23.6 bits (50), Expect = 9.8
Identities = 12/34 (35%), Positives = 15/34 (44%), Gaps = 5/34 (14%)
Query: 471 YQCQYQC-----QYQCQYQCQCQCQCQCQCQCQC 499
++CQ QC QCQ C C C +C C
Sbjct: 1 HECQCQCGSCKNNEQCQKSCSCPTGCNSDDKCPC 34
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.322 0.137 0.424
Gapped
Lambda K H
0.267 0.0604 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 2,136,497
Number of extensions: 115001
Number of successful extensions: 1376
Number of sequences better than 10.0: 1
Number of HSP's gapped: 947
Number of HSP's successfully gapped: 208
Length of query: 531
Length of database: 2,407,596
Length adjustment: 90
Effective length of query: 441
Effective length of database: 1,171,896
Effective search space: 516806136
Effective search space used: 516806136
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.2 bits)