BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy12060
(978 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3JXA|A Chain A, Immunoglobulin Domains 1-4 Of Mouse Cntn4
pdb|3JXA|B Chain B, Immunoglobulin Domains 1-4 Of Mouse Cntn4
Length = 383
Score = 221 bits (563), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 133/401 (33%), Positives = 204/401 (50%), Gaps = 27/401 (6%)
Query: 189 GPYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSD 248
GP F+++P+ V+F L + LSC G P P W +L +D D
Sbjct: 4 GPVFVQEPSHVMFPLDSEE--KKVKLSCEVKGNPKPHIRW--------KLNGTDVDIGMD 53
Query: 249 KRFTLSGGNLIINDPRQVEDRGSYHCKASNKFGSIISESVQLAFGFIGEFNLKRAPEIG- 307
R+++ G+L+IN+P + +D G+Y C A+N FG+I+S +L F ++ F + +
Sbjct: 54 FRYSVVDGSLLINNPNKTQDAGTYQCIATNSFGTIVSREAKLQFAYLENFKTRTRSTVSV 113
Query: 308 NQNWGKAMFCDPPTNYPGVNYYWARDYFPNFVEEDKRVFVSYD-GALYFSALEQIDAGNY 366
+ G + C PP + ++Y W + +P++ +D R FVS + G LY + +E+ D GNY
Sbjct: 114 RRGQGMVLLCGPPPHSGELSYAWIFNEYPSY--QDNRRFVSQETGNLYIAKVEKSDVGNY 171
Query: 367 SCNVQSKVSDTGRNGPFFPLKVFPHSNFQQL--KFPNNFPKTFPEAPKAGDKVRLECVAF 424
+C V + V++ GP PL + + K FP+T P + G V+LEC A
Sbjct: 172 TCVVTNTVTNHKVLGPPTPLILRNDGVMGEYEPKIEVQFPETVPA--EKGTTVKLECFAL 229
Query: 425 GYPVPSYNWTRR-GSPLPRNAYFENFNRILTIPNVKVEDQGEYICRASNDRSALESSVTI 483
G PVP+ W R G P+ R A N IL IPN + ED G Y C A N R + +
Sbjct: 230 GNPVPTILWRRADGKPIARKARRHKSNGILEIPNFQQEDAGSYECVAENSRGKNVAKGQL 289
Query: 484 SIQAEPNFTIPLTDKHMDNQADLTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYF 543
+ A+PN+ + D H+ + + W C+A G P TY W +NG+ PL +DR
Sbjct: 290 TFYAQPNWVQIINDIHVAMEESVFWECKANGRPKPTYRWLKNGD-------PLLTRDRIQ 342
Query: 544 IQDNVLTIRYLNPERDPAMYQCRAKNQLKTRYSSAQLRVLT 584
I+ L I +N D MYQC A+N+ +SSA+L V+
Sbjct: 343 IEQGTLNITIVNLS-DAGMYQCVAENKHGVIFSSAELSVIA 382
Score = 73.9 bits (180), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 92/372 (24%), Positives = 144/372 (38%), Gaps = 44/372 (11%)
Query: 416 KVRLECVAFGYPVPSYNWTRRGSPLPRNAYFE----NFNRILTIPNVKVEDQGEYICRAS 471
KV+L C G P P W G+ + F + + ++ PN K +D G Y C A+
Sbjct: 24 KVKLSCEVKGNPKPHIRWKLNGTDVDIGMDFRYSVVDGSLLINNPN-KTQDAGTYQCIAT 82
Query: 472 NDRSALES-SVTISIQAEPNF-TIPLTDKHMDNQADLTWTCEAFGVP----DVTYSWFRN 525
N + S + NF T + + + C G P +++Y+W N
Sbjct: 83 NSFGTIVSREAKLQFAYLENFKTRTRSTVSVRRGQGMVLLC---GPPPHSGELSYAWIFN 139
Query: 526 GELLNSETLPLEDQDRYFIQDNVLTIRYLNPER-DPAMYQCRAKNQLKTRYSSAQLRVLT 584
P +R F+ + E+ D Y C N + L
Sbjct: 140 -------EYPSYQDNRRFVSQETGNLYIAKVEKSDVGNYTCVVTNTVTNHKVLGPPTPLI 192
Query: 585 LK---------PSFKKRPLESETYAGEGGNVTIFCNPEAAPKPKFVWKK-DGNIIGSGGR 634
L+ P + + E+ A +G V + C P P +W++ DG I R
Sbjct: 193 LRNDGVMGEYEPKIEVQFPET-VPAEKGTTVKLECFALGNPVPTILWRRADGKPIARKAR 251
Query: 635 RKIFENGNLLISPVSRDDSGIYSCTATNVHGMDESKGRLIVLHGPSYYEQLPPKITIAAH 694
R NG L I ++D+G Y C A N G + +KG+L P++ Q+ I +A
Sbjct: 252 RHK-SNGILEIPNFQQEDAGSYECVAENSRGKNVAKGQLTFYAQPNWV-QIINDIHVAME 309
Query: 695 RNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEITNASFADAGE 754
++ C A+ Y W NG + D I I+ G L IT + +DAG
Sbjct: 310 ESVFWECKANGRP--KPTYRWLKNGDPLLTRD-------RIQIEQGTLNITIVNLSDAGM 360
Query: 755 YECVVKSTVGKI 766
Y+CV ++ G I
Sbjct: 361 YQCVAENKHGVI 372
Score = 57.0 bits (136), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 46/167 (27%), Positives = 76/167 (45%), Gaps = 11/167 (6%)
Query: 510 CEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQDNVLTIRYLNPERDPAMYQCRAKN 569
C A G P T W R ++ P+ + R + +L I E D Y+C A+N
Sbjct: 226 CFALGNPVPTILWRR------ADGKPIARKARRHKSNGILEIPNFQQE-DAGSYECVAEN 278
Query: 570 QLKTRYSSAQLRVLTLKPSFKKRPLESETYAGEGGNVTIFCNPEAAPKPKFVWKKDGNII 629
+ QL +P++ + + ++ + +V C PKP + W K+G+ +
Sbjct: 279 SRGKNVAKGQL-TFYAQPNWVQ--IINDIHVAMEESVFWECKANGRPKPTYRWLKNGDPL 335
Query: 630 GSGGRRKIFENGNLLISPVSRDDSGIYSCTATNVHGMDESKGRLIVL 676
+ R +I E G L I+ V+ D+G+Y C A N HG+ S L V+
Sbjct: 336 LTRDRIQI-EQGTLNITIVNLSDAGMYQCVAENKHGVIFSSAELSVI 381
Score = 53.1 bits (126), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 41/139 (29%), Positives = 59/139 (42%), Gaps = 11/139 (7%)
Query: 350 DGALYFSALEQIDAGNYSCNVQSKVSDTGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPE 409
+G L +Q DAG+Y C ++ G+N L + N+ Q+ N+ E
Sbjct: 256 NGILEIPNFQQEDAGSYECVAEN---SRGKNVAKGQLTFYAQPNWVQII--NDIHVAMEE 310
Query: 410 APKAGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYFENFNRILTIPNVKVEDQGEYICR 469
+ V EC A G P P+Y W + G PL + L I V + D G Y C
Sbjct: 311 S------VFWECKANGRPKPTYRWLKNGDPLLTRDRIQIEQGTLNITIVNLSDAGMYQCV 364
Query: 470 ASNDRSALESSVTISIQAE 488
A N + SS +S+ AE
Sbjct: 365 AENKHGVIFSSAELSVIAE 383
Score = 52.4 bits (124), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 51/194 (26%), Positives = 80/194 (41%), Gaps = 32/194 (16%)
Query: 582 VLTLKPSFKKRPLESETYAGEGGNVTIFCNPEAAPKPKFVWKKDGN--IIGSGGRRKIFE 639
V +PS PL+SE V + C + PKP WK +G IG R + +
Sbjct: 6 VFVQEPSHVMFPLDSEEK-----KVKLSCEVKGNPKPHIRWKLNGTDVDIGMDFRYSVVD 60
Query: 640 NGNLLISPVSRDDSGIYSCTATNVHGMDESK-GRLIVLHGPSYYEQLPPKITIAAHRNLQ 698
L+ +P D+G Y C ATN G S+ +L + ++ + +++ + +
Sbjct: 61 GSLLINNPNKTQDAGTYQCIATNSFGTIVSREAKLQFAYLENFKTRTRSTVSVRRGQGMV 120
Query: 699 LRCS--AHTEELLDVAYIWTHNGVRIGNMDLNELETPN-------INIDGGLLEITNASF 749
L C H+ EL +Y W N E P+ ++ + G L I
Sbjct: 121 LLCGPPPHSGEL---SYAWIFN------------EYPSYQDNRRFVSQETGNLYIAKVEK 165
Query: 750 ADAGEYECVVKSTV 763
+D G Y CVV +TV
Sbjct: 166 SDVGNYTCVVTNTV 179
>pdb|3KLD|A Chain A, Ptprg Cntn4 Complex
Length = 384
Score = 221 bits (563), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 133/401 (33%), Positives = 204/401 (50%), Gaps = 27/401 (6%)
Query: 189 GPYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSD 248
GP F+++P+ V+F L + LSC G P P W +L +D D
Sbjct: 5 GPVFVQEPSHVMFPLDSEE--KKVKLSCEVKGNPKPHIRW--------KLNGTDVDIGMD 54
Query: 249 KRFTLSGGNLIINDPRQVEDRGSYHCKASNKFGSIISESVQLAFGFIGEFNLKRAPEIG- 307
R+++ G+L+IN+P + +D G+Y C A+N FG+I+S +L F ++ F + +
Sbjct: 55 FRYSVVDGSLLINNPNKTQDAGTYQCIATNSFGTIVSREAKLQFAYLENFKTRTRSTVSV 114
Query: 308 NQNWGKAMFCDPPTNYPGVNYYWARDYFPNFVEEDKRVFVSYD-GALYFSALEQIDAGNY 366
+ G + C PP + ++Y W + +P++ +D R FVS + G LY + +E+ D GNY
Sbjct: 115 RRGQGMVLLCGPPPHSGELSYAWIFNEYPSY--QDNRRFVSQETGNLYIAKVEKSDVGNY 172
Query: 367 SCNVQSKVSDTGRNGPFFPLKVFPHSNFQQL--KFPNNFPKTFPEAPKAGDKVRLECVAF 424
+C V + V++ GP PL + + K FP+T P + G V+LEC A
Sbjct: 173 TCVVTNTVTNHKVLGPPTPLILRNDGVMGEYEPKIEVQFPETVPA--EKGTTVKLECFAL 230
Query: 425 GYPVPSYNWTRR-GSPLPRNAYFENFNRILTIPNVKVEDQGEYICRASNDRSALESSVTI 483
G PVP+ W R G P+ R A N IL IPN + ED G Y C A N R + +
Sbjct: 231 GNPVPTILWRRADGKPIARKARRHKSNGILEIPNFQQEDAGSYECVAENSRGKNVAKGQL 290
Query: 484 SIQAEPNFTIPLTDKHMDNQADLTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYF 543
+ A+PN+ + D H+ + + W C+A G P TY W +NG+ PL +DR
Sbjct: 291 TFYAQPNWVQIINDIHVAMEESVFWECKANGRPKPTYRWLKNGD-------PLLTRDRIQ 343
Query: 544 IQDNVLTIRYLNPERDPAMYQCRAKNQLKTRYSSAQLRVLT 584
I+ L I +N D MYQC A+N+ +SSA+L V+
Sbjct: 344 IEQGTLNITIVNLS-DAGMYQCVAENKHGVIFSSAELSVIA 383
Score = 73.9 bits (180), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 92/372 (24%), Positives = 144/372 (38%), Gaps = 44/372 (11%)
Query: 416 KVRLECVAFGYPVPSYNWTRRGSPLPRNAYFE----NFNRILTIPNVKVEDQGEYICRAS 471
KV+L C G P P W G+ + F + + ++ PN K +D G Y C A+
Sbjct: 25 KVKLSCEVKGNPKPHIRWKLNGTDVDIGMDFRYSVVDGSLLINNPN-KTQDAGTYQCIAT 83
Query: 472 NDRSALES-SVTISIQAEPNF-TIPLTDKHMDNQADLTWTCEAFGVP----DVTYSWFRN 525
N + S + NF T + + + C G P +++Y+W N
Sbjct: 84 NSFGTIVSREAKLQFAYLENFKTRTRSTVSVRRGQGMVLLC---GPPPHSGELSYAWIFN 140
Query: 526 GELLNSETLPLEDQDRYFIQDNVLTIRYLNPER-DPAMYQCRAKNQLKTRYSSAQLRVLT 584
P +R F+ + E+ D Y C N + L
Sbjct: 141 -------EYPSYQDNRRFVSQETGNLYIAKVEKSDVGNYTCVVTNTVTNHKVLGPPTPLI 193
Query: 585 LK---------PSFKKRPLESETYAGEGGNVTIFCNPEAAPKPKFVWKK-DGNIIGSGGR 634
L+ P + + E+ A +G V + C P P +W++ DG I R
Sbjct: 194 LRNDGVMGEYEPKIEVQFPET-VPAEKGTTVKLECFALGNPVPTILWRRADGKPIARKAR 252
Query: 635 RKIFENGNLLISPVSRDDSGIYSCTATNVHGMDESKGRLIVLHGPSYYEQLPPKITIAAH 694
R NG L I ++D+G Y C A N G + +KG+L P++ Q+ I +A
Sbjct: 253 RHK-SNGILEIPNFQQEDAGSYECVAENSRGKNVAKGQLTFYAQPNWV-QIINDIHVAME 310
Query: 695 RNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEITNASFADAGE 754
++ C A+ Y W NG + D I I+ G L IT + +DAG
Sbjct: 311 ESVFWECKANGRP--KPTYRWLKNGDPLLTRD-------RIQIEQGTLNITIVNLSDAGM 361
Query: 755 YECVVKSTVGKI 766
Y+CV ++ G I
Sbjct: 362 YQCVAENKHGVI 373
Score = 57.0 bits (136), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 46/167 (27%), Positives = 76/167 (45%), Gaps = 11/167 (6%)
Query: 510 CEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQDNVLTIRYLNPERDPAMYQCRAKN 569
C A G P T W R ++ P+ + R + +L I E D Y+C A+N
Sbjct: 227 CFALGNPVPTILWRR------ADGKPIARKARRHKSNGILEIPNFQQE-DAGSYECVAEN 279
Query: 570 QLKTRYSSAQLRVLTLKPSFKKRPLESETYAGEGGNVTIFCNPEAAPKPKFVWKKDGNII 629
+ QL +P++ + + ++ + +V C PKP + W K+G+ +
Sbjct: 280 SRGKNVAKGQL-TFYAQPNWVQ--IINDIHVAMEESVFWECKANGRPKPTYRWLKNGDPL 336
Query: 630 GSGGRRKIFENGNLLISPVSRDDSGIYSCTATNVHGMDESKGRLIVL 676
+ R +I E G L I+ V+ D+G+Y C A N HG+ S L V+
Sbjct: 337 LTRDRIQI-EQGTLNITIVNLSDAGMYQCVAENKHGVIFSSAELSVI 382
Score = 53.1 bits (126), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 41/139 (29%), Positives = 59/139 (42%), Gaps = 11/139 (7%)
Query: 350 DGALYFSALEQIDAGNYSCNVQSKVSDTGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPE 409
+G L +Q DAG+Y C ++ G+N L + N+ Q+ N+ E
Sbjct: 257 NGILEIPNFQQEDAGSYECVAEN---SRGKNVAKGQLTFYAQPNWVQII--NDIHVAMEE 311
Query: 410 APKAGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYFENFNRILTIPNVKVEDQGEYICR 469
+ V EC A G P P+Y W + G PL + L I V + D G Y C
Sbjct: 312 S------VFWECKANGRPKPTYRWLKNGDPLLTRDRIQIEQGTLNITIVNLSDAGMYQCV 365
Query: 470 ASNDRSALESSVTISIQAE 488
A N + SS +S+ AE
Sbjct: 366 AENKHGVIFSSAELSVIAE 384
Score = 52.4 bits (124), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 51/194 (26%), Positives = 80/194 (41%), Gaps = 32/194 (16%)
Query: 582 VLTLKPSFKKRPLESETYAGEGGNVTIFCNPEAAPKPKFVWKKDGN--IIGSGGRRKIFE 639
V +PS PL+SE V + C + PKP WK +G IG R + +
Sbjct: 7 VFVQEPSHVMFPLDSEEK-----KVKLSCEVKGNPKPHIRWKLNGTDVDIGMDFRYSVVD 61
Query: 640 NGNLLISPVSRDDSGIYSCTATNVHGMDESK-GRLIVLHGPSYYEQLPPKITIAAHRNLQ 698
L+ +P D+G Y C ATN G S+ +L + ++ + +++ + +
Sbjct: 62 GSLLINNPNKTQDAGTYQCIATNSFGTIVSREAKLQFAYLENFKTRTRSTVSVRRGQGMV 121
Query: 699 LRCS--AHTEELLDVAYIWTHNGVRIGNMDLNELETPN-------INIDGGLLEITNASF 749
L C H+ EL +Y W N E P+ ++ + G L I
Sbjct: 122 LLCGPPPHSGEL---SYAWIFN------------EYPSYQDNRRFVSQETGNLYIAKVEK 166
Query: 750 ADAGEYECVVKSTV 763
+D G Y CVV +TV
Sbjct: 167 SDVGNYTCVVTNTV 180
>pdb|2OM5|A Chain A, N-Terminal Fragment Of Human Tax1
Length = 381
Score = 213 bits (543), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 144/406 (35%), Positives = 197/406 (48%), Gaps = 41/406 (10%)
Query: 189 GPYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSD 248
GP F QP V+F + S + L+C A P +Y W K + + +L +P S
Sbjct: 3 GPVFEDQPLSVLF--PEESTEEQVLLACRARASPPATYRW-KMNGTEMKL-----EPGS- 53
Query: 249 KRFTLSGGNLIINDPRQVEDRGSYHCKASNKFGSIISESVQLAFGFIGEFNLK-RAPEIG 307
R L GGNL+I +P + +D G Y C ASN G+++S L FGF+ EF+ + R P
Sbjct: 54 -RHQLVGGNLVIMNPTKAQDAGVYQCLASNPVGTVVSREAILRFGFLQEFSKEERDPVKA 112
Query: 308 NQNWGKAMFCDPPTNYPGVNYYWARDYFPNFVEEDKRVFVSYD-GALYFSALEQIDAGNY 366
++ WG + C+PP +YPG++Y W + FPNF+ D R FVS G LY + D GNY
Sbjct: 113 HEGWGVMLPCNPPAHYPGLSYRWLLNEFPNFIPTDGRHFVSQTTGNLYIARTNASDLGNY 172
Query: 367 SCNVQSKVSDTGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPEAPKA----------GDK 416
SC S + F VF S F QL + F + KA G +
Sbjct: 173 SCLATSHMD-------FSTKSVF--SKFAQLNLAAEDTRLFAPSIKARFPAETYALVGQQ 223
Query: 417 VRLECVAFGYPVPSYNWTRRGSPLPRNAYFENFNRILTIPNVKVEDQGEYICRASNDRSA 476
V LEC AFG PVP W + L + + L IP+V ED+G Y C A N +
Sbjct: 224 VTLECFAFGNPVPRIKWRKVDGSL--SPQWTTAEPTLQIPSVSFEDEGTYECEAENSKGR 281
Query: 477 LESSVTISIQAEPNFTIPLTDKHMDNQADLTWTCEAFGVPDVTYSWFRNGELLNSETLPL 536
I +QA+P + ++D D ++L W C A G P T W RNGE PL
Sbjct: 282 DTVQGRIIVQAQPEWLKVISDTEADIGSNLRWGCAAAGKPRPTVRWLRNGE-------PL 334
Query: 537 EDQDRYFIQDNVLTIRYLNPERDPAMYQCRAKNQLKTRYSSAQLRV 582
Q+R + L L+ E D MYQC A+N+ T Y+SA+L V
Sbjct: 335 ASQNRVEVLAGDLRFSKLSLE-DSGMYQCVAENKHGTIYASAELAV 379
Score = 83.2 bits (204), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 99/385 (25%), Positives = 149/385 (38%), Gaps = 53/385 (13%)
Query: 407 FPEAPKAGDKVRLECVAFGYPVPSYNWTRRGSPL---PRNAYFENFNRILTIPNVKVEDQ 463
FPE ++V L C A P +Y W G+ + P + + ++ + K +D
Sbjct: 15 FPEE-STEEQVLLACRARASPPATYRWKMNGTEMKLEPGSRHQLVGGNLVIMNPTKAQDA 73
Query: 464 GEYICRASNDRSALESSVTISIQAEPNFTIPLTDKHMDNQADLTWTCEAFGV-------- 515
G Y C ASN V + E + + D E +GV
Sbjct: 74 GVYQCLASN-------PVGTVVSREAILRFGFLQEFSKEERDPVKAHEGWGVMLPCNPPA 126
Query: 516 --PDVTYSWFRNGELLNSETLPLEDQDRYFIQDNV--LTIRYLNPERDPAMYQCRAKNQL 571
P ++Y W LLN + R+F+ L I N D Y C A + +
Sbjct: 127 HYPGLSYRW-----LLNEFPNFIPTDGRHFVSQTTGNLYIARTNAS-DLGNYSCLATSHM 180
Query: 572 ----KTRYSS-AQLRVLT-----LKPSFKKRPLESETYAGEGGNVTIFCNPEAAPKPKFV 621
K+ +S AQL + PS K R +ETYA G VT+ C P P+
Sbjct: 181 DFSTKSVFSKFAQLNLAAEDTRLFAPSIKAR-FPAETYALVGQQVTLECFAFGNPVPRIK 239
Query: 622 WKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTATNVHGMDESKGRLIVLHGPSY 681
W+K + GS + L I VS +D G Y C A N G D +GR+IV P +
Sbjct: 240 WRK---VDGSLSPQWTTAEPTLQIPSVSFEDEGTYECEAENSKGRDTVQGRIIVQAQPEW 296
Query: 682 YEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGL 741
+ + NL+ C+A + V W NG + + + + + G
Sbjct: 297 LKVI-SDTEADIGSNLRWGCAAAGKPRPTVR--WLRNGEPLASQN-------RVEVLAGD 346
Query: 742 LEITNASFADAGEYECVVKSTVGKI 766
L + S D+G Y+CV ++ G I
Sbjct: 347 LRFSKLSLEDSGMYQCVAENKHGTI 371
Score = 59.7 bits (143), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 89/373 (23%), Positives = 138/373 (36%), Gaps = 48/373 (12%)
Query: 324 PGVNYYWARDYFPNFVEEDKRVFVSYDGALYFSALEQIDAGNYSCNVQSKVSDTGRNGPF 383
P Y W + +E R + + + + DAG Y C + V
Sbjct: 34 PPATYRWKMNGTEMKLEPGSRHQLVGGNLVIMNPTKAQDAGVYQCLASNPVG-------- 85
Query: 384 FPLKVFPHSNFQQLKFPNNFPKTFPEAPKA--GDKVRLEC-VAFGYPVPSYNWTRRGSP- 439
V + F F K + KA G V L C YP SY W P
Sbjct: 86 ---TVVSREAILRFGFLQEFSKEERDPVKAHEGWGVMLPCNPPAHYPGLSYRWLLNEFPN 142
Query: 440 -LPRNA--YFENFNRILTIPNVKVEDQGEYICRASND-----RSALESSVTISIQAE--- 488
+P + + L I D G Y C A++ +S +++ AE
Sbjct: 143 FIPTDGRHFVSQTTGNLYIARTNASDLGNYSCLATSHMDFSTKSVFSKFAQLNLAAEDTR 202
Query: 489 ---PNFT--IPLTDKHMDNQADLTWTCEAFGVPDVTYSWFR-NGELLNSETLPLEDQDRY 542
P+ P + Q +T C AFG P W + +G L ++
Sbjct: 203 LFAPSIKARFPAETYALVGQ-QVTLECFAFGNPVPRIKWRKVDGSL----------SPQW 251
Query: 543 FIQDNVLTIRYLNPERDPAMYQCRAKNQLKTRYSSAQLRVLTLKPSFKKRPLESETYAGE 602
+ L I ++ E D Y+C A+N K R + ++ +P + K + S+T A
Sbjct: 252 TTAEPTLQIPSVSFE-DEGTYECEAENS-KGRDTVQGRIIVQAQPEWLK--VISDTEADI 307
Query: 603 GGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTATN 662
G N+ C P+P W ++G + S R ++ G+L S +S +DSG+Y C A N
Sbjct: 308 GSNLRWGCAAAGKPRPTVRWLRNGEPLASQNRVEVLA-GDLRFSKLSLEDSGMYQCVAEN 366
Query: 663 VHGMDESKGRLIV 675
HG + L V
Sbjct: 367 KHGTIYASAELAV 379
Score = 50.4 bits (119), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 70/284 (24%), Positives = 103/284 (36%), Gaps = 47/284 (16%)
Query: 221 YPNPSYEWFKEDYVQDRLVANLIDPLSDKRF-TLSGGNLIINDPRQVEDRGSYHCKASNK 279
YP SY W ++ N I P + F + + GNL I D G+Y C A++
Sbjct: 128 YPGLSYRWLLNEF------PNFI-PTDGRHFVSQTTGNLYIAR-TNASDLGNYSCLATSH 179
Query: 280 F----GSIISESVQLAFGFIGEFNLKRAPEIGNQNWGKAMFCDPPTNYPGVNYYWARDYF 335
S+ S+ QL E AP I KA F P Y V + F
Sbjct: 180 MDFSTKSVFSKFAQL--NLAAEDTRLFAPSI------KARF--PAETYALVGQQVTLECF 229
Query: 336 PNFVEEDKRVFVSYDGAL-----------YFSALEQIDAGNYSCNVQ-SKVSDTGRNGPF 383
+ + DG+L ++ D G Y C + SK DT +
Sbjct: 230 AFGNPVPRIKWRKVDGSLSPQWTTAEPTLQIPSVSFEDEGTYECEAENSKGRDTVQG--- 286
Query: 384 FPLKVFPHSNFQQLKFPNNFPKTFPEAPKAGDKVRLECVAFGYPVPSYNWTRRGSPLPRN 443
++ + + LK ++ G +R C A G P P+ W R G PL
Sbjct: 287 ---RIIVQAQPEWLKVISDTEADI------GSNLRWGCAAAGKPRPTVRWLRNGEPLASQ 337
Query: 444 AYFENFNRILTIPNVKVEDQGEYICRASNDRSALESSVTISIQA 487
E L + +ED G Y C A N + +S +++QA
Sbjct: 338 NRVEVLAGDLRFSKLSLEDSGMYQCVAENKHGTIYASAELAVQA 381
>pdb|1CS6|A Chain A, N-terminal Fragment Of Axonin-1 From Chicken
Length = 382
Score = 207 bits (526), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 136/406 (33%), Positives = 192/406 (47%), Gaps = 41/406 (10%)
Query: 189 GPYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSD 248
GP F +QP +F + S +TL+C A P +Y W ++ + D
Sbjct: 4 GPVFEEQPAHTLF--PEGSAEEKVTLTCRARANPPATYRW--------KMNGTELKMGPD 53
Query: 249 KRFTLSGGNLIINDPRQVEDRGSYHCKASNKFGSIISESVQLAFGFIGEFNLK-RAPEIG 307
R+ L G+L+I++P + +D GSY C A+N G+++S L FGF+ EF+ + R P
Sbjct: 54 SRYRLVAGDLVISNPVKAKDAGSYQCVATNARGTVVSREASLRFGFLQEFSAEERDPVKI 113
Query: 308 NQNWGKAMFCDPPTNYPGVNYYWARDYFPNFVEEDKRVFVSYD-GALYFSALEQIDAGNY 366
+ WG C PP +YP ++Y W + FPNF+ D R FVS G LY + E D GNY
Sbjct: 114 TEGWGVMFTCSPPPHYPALSYRWLLNEFPNFIPADGRRFVSQTTGNLYIAKTEASDLGNY 173
Query: 367 SCNVQSKVSDTGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPEAPKA----------GDK 416
SC S + F VF S F QL + + + KA G
Sbjct: 174 SCFATSHID-------FITKSVF--SKFSQLSLAAEDARQYAPSIKAKFPADTYALTGQM 224
Query: 417 VRLECVAFGYPVPSYNWTRRGSPLPRNAYFENFNRILTIPNVKVEDQGEYICRASNDRSA 476
V LEC AFG PVP W + + + + + +L I NV ED+G Y C A N +
Sbjct: 225 VTLECFAFGNPVPQIKWRKLDGS--QTSKWLSSEPLLHIQNVDFEDEGTYECEAENIKGR 282
Query: 477 LESSVTISIQAEPNFTIPLTDKHMDNQADLTWTCEAFGVPDVTYSWFRNGELLNSETLPL 536
I I A+P++ +TD D +DL W+C A G P W R+G+ PL
Sbjct: 283 DTYQGRIIIHAQPDWLDVITDTEADIGSDLRWSCVASGKPRPAVRWLRDGQ-------PL 335
Query: 537 EDQDRYFIQDNVLTIRYLNPERDPAMYQCRAKNQLKTRYSSAQLRV 582
Q+R + L L E D MYQC A+N+ T Y+SA+L V
Sbjct: 336 ASQNRIEVSGGELRFSKLVLE-DSGMYQCVAENKHGTVYASAELTV 380
Score = 85.5 bits (210), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 94/384 (24%), Positives = 147/384 (38%), Gaps = 51/384 (13%)
Query: 407 FPEAPKAGDKVRLECVAFGYPVPSYNWTRRGSPL---PRNAYFENFNRILTIPNVKVEDQ 463
FPE A +KV L C A P +Y W G+ L P + Y ++ VK +D
Sbjct: 16 FPEG-SAEEKVTLTCRARANPPATYRWKMNGTELKMGPDSRYRLVAGDLVISNPVKAKDA 74
Query: 464 GEYICRASNDRSALESSVTISIQAEPNFTIPLTDKHMDNQADLTWTCEAFGV-------- 515
G Y C A+N R + + E + + + D E +GV
Sbjct: 75 GSYQCVATNARGTV-------VSREASLRFGFLQEFSAEERDPVKITEGWGVMFTCSPPP 127
Query: 516 --PDVTYSWFRNGELLNSETLPLEDQDRYFIQDNVLTIRYLNPE-RDPAMYQCRAKNQLK 572
P ++Y W LLN + R F+ + E D Y C A + +
Sbjct: 128 HYPALSYRW-----LLNEFPNFIPADGRRFVSQTTGNLYIAKTEASDLGNYSCFATSHID 182
Query: 573 --TRYSSAQLRVLTLK--------PSFKKRPLESETYAGEGGNVTIFCNPEAAPKPKFVW 622
T+ ++ L+L PS K + ++TYA G VT+ C P P+ W
Sbjct: 183 FITKSVFSKFSQLSLAAEDARQYAPSIKAK-FPADTYALTGQMVTLECFAFGNPVPQIKW 241
Query: 623 KKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTATNVHGMDESKGRLIVLHGPSYY 682
+K + GS + + L I V +D G Y C A N+ G D +GR+I+ P +
Sbjct: 242 RK---LDGSQTSKWLSSEPLLHIQNVDFEDEGTYECEAENIKGRDTYQGRIIIHAQPDWL 298
Query: 683 EQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLL 742
+ + A LR S A W +G + + + I + GG L
Sbjct: 299 DVI---TDTEADIGSDLRWSCVASGKPRPAVRWLRDGQPLASQN-------RIEVSGGEL 348
Query: 743 EITNASFADAGEYECVVKSTVGKI 766
+ D+G Y+CV ++ G +
Sbjct: 349 RFSKLVLEDSGMYQCVAENKHGTV 372
Score = 62.8 bits (151), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 85/371 (22%), Positives = 142/371 (38%), Gaps = 44/371 (11%)
Query: 324 PGVNYYWARDYFPNFVEEDKRVFVSYDGALYFSALEQIDAGNYSC---NVQSKVSDTGRN 380
P Y W + + D R + + + ++ DAG+Y C N + V +
Sbjct: 35 PPATYRWKMNGTELKMGPDSRYRLVAGDLVISNPVKAKDAGSYQCVATNARGTVVSREAS 94
Query: 381 GPFFPLKVFPHSNFQQLKFPNNFPKTFPEAPKAGDKVRLECVAFGYPVPSYNWTRRGSP- 439
F L+ F +K + F +P YP SY W P
Sbjct: 95 LRFGFLQEFSAEERDPVKITEGWGVMFTCSPPPH-----------YPALSYRWLLNEFPN 143
Query: 440 -LPRNA--YFENFNRILTIPNVKVEDQGEYICRASNDRSALESSV-----TISIQAE--- 488
+P + + L I + D G Y C A++ + SV +S+ AE
Sbjct: 144 FIPADGRRFVSQTTGNLYIAKTEASDLGNYSCFATSHIDFITKSVFSKFSQLSLAAEDAR 203
Query: 489 ---PNFTIPL-TDKHMDNQADLTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFI 544
P+ D + +T C AFG P W + L S+T ++
Sbjct: 204 QYAPSIKAKFPADTYALTGQMVTLECFAFGNPVPQIKWRK---LDGSQT------SKWLS 254
Query: 545 QDNVLTIRYLNPERDPAMYQCRAKNQLKTRYSSAQLRVLTLKPSFKKRPLESETYAGEGG 604
+ +L I+ ++ E D Y+C A+N +K R + ++ +P + + ++T A G
Sbjct: 255 SEPLLHIQNVDFE-DEGTYECEAEN-IKGRDTYQGRIIIHAQPDWLD--VITDTEADIGS 310
Query: 605 NVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTATNVH 664
++ C P+P W +DG + S R ++ G L S + +DSG+Y C A N H
Sbjct: 311 DLRWSCVASGKPRPAVRWLRDGQPLASQNRIEV-SGGELRFSKLVLEDSGMYQCVAENKH 369
Query: 665 GMDESKGRLIV 675
G + L V
Sbjct: 370 GTVYASAELTV 380
Score = 54.3 bits (129), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 71/282 (25%), Positives = 107/282 (37%), Gaps = 43/282 (15%)
Query: 221 YPNPSYEWFKEDYVQDRLVANLIDPLSDKRF-TLSGGNLIINDPRQVEDRGSYHCKASNK 279
YP SY W ++ N I P +RF + + GNL I + D G+Y C A++
Sbjct: 129 YPALSYRWLLNEF------PNFI-PADGRRFVSQTTGNLYIAK-TEASDLGNYSCFATSH 180
Query: 280 FG----SIISESVQLAFGFIGEFNLKRAPEIGNQNWGKAMFCDPPTNYPGVNYYWARDYF 335
S+ S+ QL+ E + AP I KA F G F
Sbjct: 181 IDFITKSVFSKFSQLSLA--AEDARQYAPSI------KAKFPADTYALTGQMVTLECFAF 232
Query: 336 PNFVEEDK---------RVFVSYDGALYFSALEQIDAGNYSCNVQS-KVSDTGRNGPFFP 385
N V + K ++S + L+ ++ D G Y C ++ K DT +
Sbjct: 233 GNPVPQIKWRKLDGSQTSKWLSSEPLLHIQNVDFEDEGTYECEAENIKGRDT------YQ 286
Query: 386 LKVFPHSNFQQLKFPNNFPKTFPEAPKAGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAY 445
++ H+ P+ G +R CVA G P P+ W R G PL
Sbjct: 287 GRIIIHAQ------PDWLDVITDTEADIGSDLRWSCVASGKPRPAVRWLRDGQPLASQNR 340
Query: 446 FENFNRILTIPNVKVEDQGEYICRASNDRSALESSVTISIQA 487
E L + +ED G Y C A N + +S +++QA
Sbjct: 341 IEVSGGELRFSKLVLEDSGMYQCVAENKHGTVYASAELTVQA 382
>pdb|3P3Y|A Chain A, Crystal Structure Of Neurofascin Homophilic Adhesion
Complex In Space Group P6522
pdb|3P40|A Chain A, Crystal Structure Of Neurofascin Adhesion Complex In Space
Group P3221
Length = 404
Score = 136 bits (343), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 118/415 (28%), Positives = 179/415 (43%), Gaps = 30/415 (7%)
Query: 185 KIPRGPYF---IKQPTDVVFDLSKRSILN---DITLSCYAGGYPNPSYEWFKEDYVQDRL 238
+IP P + QP + +K I++ +I + C A G P PS+ W + R
Sbjct: 2 EIPMDPSIQNELTQPPTITKQSAKDHIVDPRDNILIECEAKGNPAPSFHWTR----NSRF 57
Query: 239 VANLIDPLSDKRFTLSGGNLIIN---DPRQVEDRGSYHCKASNKFGSIISESVQLAFG-- 293
DP R G L+I+ R E G Y C A NKFG+ +S ++L
Sbjct: 58 FNIAKDPRVSMR--RRSGTLVIDFRSGGRPEEYEGEYQCFARNKFGTALSNRIRLQVSKS 115
Query: 294 -FIGEFNLKRAPEIGNQNWGKAMFCDPPTNYPGVNYYWARDYFPNFVEEDKRVFVSYDGA 352
+ NL P + + + C+PP P +W + +DKRV ++G
Sbjct: 116 PLWPKENLD--PVVVQEGAPLTLQCNPPPGLPSPVIFWMSSSM-EPITQDKRVSQGHNGD 172
Query: 353 LYFS-ALEQIDAGNYSCNVQSKVSDTGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPEAP 411
LYFS + Q +YSCN + + T + F LKV + +P+ +
Sbjct: 173 LYFSNVMLQDMQTDYSCNARFHFTHTIQQKNPFTLKVLTTRGVAERTPSFMYPQGTASSQ 232
Query: 412 KA--GDKVRLECVAFGYPVPSYNWTRRGSPLPRN-AYFENFNRILTIPNVKVEDQGEYIC 468
G + LEC+A G P P W ++G LP + A FENFN+ L I NV ED GEY C
Sbjct: 233 MVLRGMDLLLECIASGVPTPDIAWYKKGGDLPSDKAKFENFNKALRITNVSEEDSGEYFC 292
Query: 469 RASNDRSALESSVTISIQAEPNFTIPLTDKHMDNQADLTWTCEAFGVPDVTYSWFRNGEL 528
ASN ++ ++++ ++A P + + + D C A G P T W NGE
Sbjct: 293 LASNKMGSIRHTISVRVKAAPYWLDEPKNLILAPGEDGRLVCRANGNPKPTVQWMVNGEP 352
Query: 529 LNSETLPLEDQDRYFIQDNVLTIRYLNPERDPAMYQCRAKNQLKTRYSSAQLRVL 583
L S + +R D ++ R A+YQC N+ ++A + VL
Sbjct: 353 LQSAP---PNPNREVAGDTIIFRDTQISSR--AVYQCNTSNEHGYLLANAFVSVL 402
Score = 63.9 bits (154), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 82/309 (26%), Positives = 122/309 (39%), Gaps = 31/309 (10%)
Query: 477 LESSVTISIQAEPNFTIPLTDKHM-DNQADLTWTCEAFGVPDVTYSWFRNGELLNSETLP 535
++ S+ + P T H+ D + ++ CEA G P ++ W RN N P
Sbjct: 5 MDPSIQNELTQPPTITKQSAKDHIVDPRDNILIECEAKGNPAPSFHWTRNSRFFNIAKDP 64
Query: 536 LEDQDRYFIQDNVLTIRYLN---PERDPAMYQCRAKNQLKTRYSSAQLRVLTLKPSFKKR 592
R + L I + + PE YQC A+N+ T S+ ++ P + K
Sbjct: 65 RVSMRR---RSGTLVIDFRSGGRPEEYEGEYQCFARNKFGTALSNRIRLQVSKSPLWPKE 121
Query: 593 PLESETYAGEGGNVTIFCNPEAA-PKPKFVWKKDG-NIIGSGGRRKIFENGNLLISPVSR 650
L+ EG +T+ CNP P P W I R NG+L S V
Sbjct: 122 NLDP-VVVQEGAPLTLQCNPPPGLPSPVIFWMSSSMEPITQDKRVSQGHNGDLYFSNVML 180
Query: 651 DDSGI-YSCTATN--VHGMDESKG-RLIVLHGPSYYEQLP----PKITIAAHR-----NL 697
D YSC A H + + L VL E+ P P+ T ++ +L
Sbjct: 181 QDMQTDYSCNARFHFTHTIQQKNPFTLKVLTTRGVAERTPSFMYPQGTASSQMVLRGMDL 240
Query: 698 QLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEITNASFADAGEYEC 757
L C A D+A W G G++ ++ + N N L ITN S D+GEY C
Sbjct: 241 LLECIASGVPTPDIA--WYKKG---GDLPSDKAKFENFN---KALRITNVSEEDSGEYFC 292
Query: 758 VVKSTVGKI 766
+ + +G I
Sbjct: 293 LASNKMGSI 301
Score = 60.5 bits (145), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 92/378 (24%), Positives = 142/378 (37%), Gaps = 61/378 (16%)
Query: 415 DKVRLECVAFGYPVPSYNWTRRGSPLPRNAYFENFNRILTIPNVKV-------------- 460
D + +EC A G P PS++WTR N+ F N I P V +
Sbjct: 33 DNILIECEAKGNPAPSFHWTR-------NSRFFN---IAKDPRVSMRRRSGTLVIDFRSG 82
Query: 461 ----EDQGEYICRASND-RSALESSVTISIQAEPNFTIPLTDKHMDNQ-ADLTWTCEAF- 513
E +GEY C A N +AL + + + + P + D + + A LT C
Sbjct: 83 GRPEEYEGEYQCFARNKFGTALSNRIRLQVSKSPLWPKENLDPVVVQEGAPLTLQCNPPP 142
Query: 514 GVPDVTYSWFRNGELLNSETLPLEDQDRYFIQDNVLTIRYLNPERDPAM--YQCRAKNQL 571
G+P W ++S P+ QD+ Q + + + N Y C A+
Sbjct: 143 GLPSPVIFW------MSSSMEPIT-QDKRVSQGHNGDLYFSNVMLQDMQTDYSCNARFHF 195
Query: 572 KTRYSSAQ---LRVLTLKPSFKKRP-------LESETYAGEGGNVTIFCNPEAAPKPKFV 621
L+VLT + ++ P S G ++ + C P P
Sbjct: 196 THTIQQKNPFTLKVLTTRGVAERTPSFMYPQGTASSQMVLRGMDLLLECIASGVPTPDIA 255
Query: 622 WKKDGNIIGSGGRRKIFENGN--LLISPVSRDDSGIYSCTATNVHGMDESKGRLIVLHGP 679
W K G + S + FEN N L I+ VS +DSG Y C A+N G + V P
Sbjct: 256 WYKKGGDLPSDKAK--FENFNKALRITNVSEEDSGEYFCLASNKMGSIRHTISVRVKAAP 313
Query: 680 SYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDG 739
Y+ P + +A + +L C A+ V W NG + + N PN + G
Sbjct: 314 -YWLDEPKNLILAPGEDGRLVCRANGNPKPTVQ--WMVNGEPLQSAPPN----PNREVAG 366
Query: 740 GLLEITNASFADAGEYEC 757
+ + + Y+C
Sbjct: 367 DTIIFRDTQISSRAVYQC 384
>pdb|3DMK|A Chain A, Crystal Structure Of Down Syndrome Cell Adhesion Molecule
(Dscam) Isoform 1.30.30, N-Terminal Eight Ig Domains
pdb|3DMK|B Chain B, Crystal Structure Of Down Syndrome Cell Adhesion Molecule
(Dscam) Isoform 1.30.30, N-Terminal Eight Ig Domains
pdb|3DMK|C Chain C, Crystal Structure Of Down Syndrome Cell Adhesion Molecule
(Dscam) Isoform 1.30.30, N-Terminal Eight Ig Domains
Length = 816
Score = 127 bits (319), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 150/606 (24%), Positives = 241/606 (39%), Gaps = 57/606 (9%)
Query: 183 PDKIPRGPYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANL 242
PD +GP F+K+PT+ + D S + + C A G P P W + D V L
Sbjct: 32 PDADQKGPVFLKEPTNRI-DFSNST---GAEIECKASGNPMPEIIWIRSDGTAVGDVPGL 87
Query: 243 IDPLSDKRFTLSGGNLIINDPRQVEDRGSYHCKASNKFGSIISESVQL--AFGFIGEFNL 300
SD + D RQ Y C A N+FGSIIS V + E ++
Sbjct: 88 RQISSDGKLVFP--PFRAEDYRQEVHAQVYACLARNQFGSIISRDVHVRAVVAQYYEADV 145
Query: 301 KRAPEI-GNQNWGKAMFCDPPTNYPGVNYYWARD----YFPNFVEEDKRVFVSYDGALYF 355
+ I GN K + ++ V W D YFP E D + V G L+
Sbjct: 146 NKEHVIRGNSAVIKCLIPSFVADFVEV-VSWHTDEEENYFPG-AEYDGKYLVLPSGELHI 203
Query: 356 SALEQIDA-GNYSCNVQSKVSDTGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPEAPKAG 414
+ D +Y C + +++ R V + + K +
Sbjct: 204 REVGPEDGYKSYQCRTKHRLTGETRLSATKGRLVITEPISSAVPKVVSLAKFDMKTYSGS 263
Query: 415 DKVRLECVAFGYPVPSYNW------TRRGSPLPRNAYFENFNRILTIPNVKVEDQGEYIC 468
+ L C A GYPVP + W T R + N + + L I + VED G+Y+C
Sbjct: 264 STMALLCPAQGYPVPVFRWYKFIEGTTRKQAVVLNDRVKQVSGTLIIKDAVVEDSGKYLC 323
Query: 469 RASNDRSALESSVTISIQAEPNFTIPLTDKHMDNQADLTWTCEAFGVPDVTYSWFRNGEL 528
+N +++ A + I + +D +TC+ G P T SW ++G+
Sbjct: 324 VVNNSVGGESVETVLTVTAPLSAKIDPPTQTVDFGRPAVFTCQYTGNPIKTVSWMKDGKA 383
Query: 529 LNSETLPLEDQDRYFIQDNVLTIRYLNPERDPAMYQCRAKNQLKTRYSSAQLRV-LTLKP 587
+ ++VL I + E D MYQC +N ++ +SA+L++ P
Sbjct: 384 IGH-------------SESVLRIESVKKE-DKGMYQCFVRNDRESAEASAELKLGGRFDP 429
Query: 588 SFKKRPLESETYAGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFE----NGNL 643
++ + ET G +V + C P P+ W+ DG I + R ++ + NG++
Sbjct: 430 PVIRQAFQEETME-PGPSVFLKCVAGGNPTPEISWELDGKKIANNDRYQVGQYVTVNGDV 488
Query: 644 L----ISPVSRDDSGIYSCTATNVHGMDESKGRLIVLHGPSYYEQLPPKITIAAHRNLQL 699
+ I+ V +D G+Y C A + G+ E +L V +G Y Q+ K I A L +
Sbjct: 489 VSYLNITSVHANDGGLYKCIAKSKVGVAEHSAKLNV-YGLPYIRQMEKK-AIVAGETLIV 546
Query: 700 RCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEITNASF-ADAGEYECV 758
C + + +W + R ++ + PN G L I N +D Y CV
Sbjct: 547 TCPVAGYPIDSI--VWERDN-RALPINRKQKVFPN-----GTLIIENVERNSDQATYTCV 598
Query: 759 VKSTVG 764
K+ G
Sbjct: 599 AKNQEG 604
Score = 67.8 bits (164), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 81/381 (21%), Positives = 149/381 (39%), Gaps = 34/381 (8%)
Query: 212 ITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGNLI--IN-DPRQVED 268
+ L C AGG P P W + + +AN D ++ G+++ +N D
Sbjct: 447 VFLKCVAGGNPTPEISW----ELDGKKIANN-DRYQVGQYVTVNGDVVSYLNITSVHAND 501
Query: 269 RGSYHCKASNKFGSIISESVQL-AFGFIGEFNLKRAPEIGNQNWGKAMFCDPPTNYPGVN 327
G Y C A +K G + S +L +G +++ + + + P YP +
Sbjct: 502 GGLYKCIAKSKVG-VAEHSAKLNVYGLPYIRQMEKKAIVAGETL---IVTCPVAGYPIDS 557
Query: 328 YYWARDYFPNFVEEDKRVFVSYDGALYFSALEQ-IDAGNYSCNVQSKVSDTGRNGPFFPL 386
W RD + ++VF +G L +E+ D Y+C +++ + R L
Sbjct: 558 IVWERDNRALPINRKQKVFP--NGTLIIENVERNSDQATYTCVAKNQEGYSARGS----L 611
Query: 387 KVFPHSNFQQLKFPNNFPKTFPEAP-KAGDKVRLECVAFGYPVP-SYNWTRRGSPLPRN- 443
+V Q + P P F E P + G + L C G +P + +WT G + +
Sbjct: 612 EV------QVMVLPRIIPFAFEEGPAQVGQYLTLHCSVPGGDLPLNIDWTLDGQAISEDL 665
Query: 444 ----AYFENFNRILTIPNVKVEDQGEYICRASNDRSALESSVTISIQAEPNFTIPLTDKH 499
+ +LTI V+ G + C A N + + +++ P + + TDK
Sbjct: 666 GITTSRVGRRGSVLTIEAVEASHAGNFTCHARNLAGHQQFTTPLNVYVPPRWILEPTDKA 725
Query: 500 MDNQADLTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQDNVLTIRYLNPERD 559
+D C+A G P +W + E L+ D +++ L + + + +
Sbjct: 726 FAQGSDAKVECKADGFPKPQVTWKKAVGDTPGEYKDLKKSDNIRVEEGTLHVDNIQ-KTN 784
Query: 560 PAMYQCRAKNQLKTRYSSAQL 580
Y C A N + + S+ +
Sbjct: 785 EGYYLCEAINGIGSGLSAVIM 805
Score = 65.1 bits (157), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 88/346 (25%), Positives = 139/346 (40%), Gaps = 36/346 (10%)
Query: 346 FVSYDGALYFSALEQIDAGNYSCNVQSKVSDTGRNGPFFPLKVFPHSNFQQLKFPNNFPK 405
VSY L +++ D G Y C +SKV + L V+ +Q++
Sbjct: 488 VVSY---LNITSVHANDGGLYKCIAKSKVGVAEHSAK---LNVYGLPYIRQME------- 534
Query: 406 TFPEAPKAGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYFENF-NRILTIPNV-KVEDQ 463
+A AG+ + + C GYP+ S W R LP N + F N L I NV + DQ
Sbjct: 535 --KKAIVAGETLIVTCPVAGYPIDSIVWERDNRALPINRKQKVFPNGTLIIENVERNSDQ 592
Query: 464 GEYICRASNDRS-ALESSVTISIQAEPNFTIPLTDKHMDNQAD--LTWTCEAFG--VPDV 518
Y C A N + S+ + + P IP + Q LT C G +P +
Sbjct: 593 ATYTCVAKNQEGYSARGSLEVQVMVLPRI-IPFAFEEGPAQVGQYLTLHCSVPGGDLP-L 650
Query: 519 TYSWFRNGELLNSETLPLEDQDRYFIQDNVLTIRYLNPERDPAMYQCRAKNQLKTRYSSA 578
W +G+ + SE L + R + +VLTI + + C A+N + +
Sbjct: 651 NIDWTLDGQAI-SEDLGI-TTSRVGRRGSVLTIEAVEASH-AGNFTCHARNLAGHQQFTT 707
Query: 579 QLRVLTLKPSFKKRPLESETYAGEGGNVTIFCNPEAAPKPKFVWKKD-GNIIGSGGRRKI 637
L V + P + P ++ +G + + C + PKP+ WKK G+ G K
Sbjct: 708 PLNVY-VPPRWILEP--TDKAFAQGSDAKVECKADGFPKPQVTWKKAVGDTPGEYKDLKK 764
Query: 638 FEN-----GNLLISPVSRDDSGIYSCTATNVHGMDESKGRLIVLHG 678
+N G L + + + + G Y C A N G S +I +
Sbjct: 765 SDNIRVEEGTLHVDNIQKTNEGYYLCEAINGIGSGLSAVIMISVQA 810
Score = 33.1 bits (74), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 42/103 (40%), Gaps = 9/103 (8%)
Query: 190 PYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDK 249
P +I +PTD F +D + C A G+P P W K V D D
Sbjct: 715 PRWILEPTDKAFAQG-----SDAKVECKADGFPKPQVTWKKA--VGD-TPGEYKDLKKSD 766
Query: 250 RFTLSGGNLIINDPRQVEDRGSYHCKASNKFGSIISESVQLAF 292
+ G L + D Q + G Y C+A N GS +S + ++
Sbjct: 767 NIRVEEGTLHV-DNIQKTNEGYYLCEAINGIGSGLSAVIMISV 808
Score = 33.1 bits (74), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 39/154 (25%), Positives = 62/154 (40%), Gaps = 22/154 (14%)
Query: 633 GRRKIFENGNLLISPVSRDDS-GIYSCTA----TNVHGMDESKGRLIVLHGPSYYEQLPP 687
G+ + +G L I V +D Y C T + +KGRL++ S P
Sbjct: 191 GKYLVLPSGELHIREVGPEDGYKSYQCRTKHRLTGETRLSATKGRLVITEPIS---SAVP 247
Query: 688 KITIAAHRNLQLRCSAHTEELLDVA----------YIWTHNGVRIGNMDLNELETPNINI 737
K+ A +++ + T LL A Y + R + LN+ +
Sbjct: 248 KVVSLAKFDMKTYSGSSTMALLCPAQGYPVPVFRWYKFIEGTTRKQAVVLND----RVKQ 303
Query: 738 DGGLLEITNASFADAGEYECVVKSTVGKISTKTT 771
G L I +A D+G+Y CVV ++VG S +T
Sbjct: 304 VSGTLIIKDAVVEDSGKYLCVVNNSVGGESVETV 337
>pdb|3B43|A Chain A, I-band Fragment I65-i70 From Titin
Length = 570
Score = 115 bits (289), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 100/361 (27%), Positives = 157/361 (43%), Gaps = 33/361 (9%)
Query: 414 GDKVRLECVAFGYPVPSYNWTRRGSPLPRNA-----YFENFNRILTIPNVKVEDQGEYIC 468
G+ + L+C G P W + + L R+A F+N L I V D GEY C
Sbjct: 20 GEPITLQCKVDGTPEIRIAWYKEHTKL-RSAPAYKMQFKNNVASLVINKVDHSDVGEYTC 78
Query: 469 RASNDRSALESSVTISIQAE---PNFTIPLTDKHMDNQADLTWTCEAFGVPDVTYSWFRN 525
+A N A+ SS + I+ P+F L D H + + C G + SW+++
Sbjct: 79 KAENSVGAVASSAVLVIKERKLPPSFARKLKDVHETLGFPVAFECRINGSEPLQVSWYKD 138
Query: 526 GELLNSETLPLEDQDRYFIQDNVLTIRYLNPERDP-AMYQCRAKNQLKTRYSSAQLRVLT 584
GELL + + FI NV T++ L ++ Y C A N L T SSA+L +
Sbjct: 139 GELLKDDA----NLQTSFIH-NVATLQILQTDQSHVGQYNCSASNPLGTASSSAKLTLSE 193
Query: 585 --LKPSFKKRPLESETYAGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRK--IFEN 640
+ P F +P+ + GE G T C+ K W KD I GG K + EN
Sbjct: 194 HEVPPFFDLKPVSVDLALGESG--TFKCHVTGTAPIKITWAKDNREIRPGGNYKMTLVEN 251
Query: 641 -GNLLISPVSRDDSGIYSCTATNVHGMDESKGRLIVLHGPSYYEQLPPKITIAAHRNLQL 699
L + V++ D+G Y+C A+NV G D +L V P + ++L P + + +
Sbjct: 252 TATLTVLKVTKGDAGQYTCYASNVAGKDSCSAQLGVQEPPRFIKKLEPSRIVKQDEHTRY 311
Query: 700 RCSAHTEELLDVAYIWTHNGVRI---GNMDLNELETPNINIDGGLLEITNASFADAGEYE 756
C ++ +W + I ++ +E+ +LE+ N S D+G+Y
Sbjct: 312 ECKIGGSP--EIKVLWYKDETEIQESSKFRMSFVESV------AVLEMYNLSVEDSGDYT 363
Query: 757 C 757
C
Sbjct: 364 C 364
Score = 105 bits (261), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 146/600 (24%), Positives = 234/600 (39%), Gaps = 72/600 (12%)
Query: 190 PYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDK 249
PYFI +P + V + +I ITL C G P W+KE + + R P
Sbjct: 6 PYFI-EPLEHV----EAAIGEPITLQCKVDGTPEIRIAWYKE-HTKLRSA-----PAYKM 54
Query: 250 RFTLSGGNLIINDPRQVEDRGSYHCKASNKFGSIISESVQLAFGFIGEFNLKRAPEIGNQ 309
+F + +L+IN D G Y CKA N G++ S +V + + R + ++
Sbjct: 55 QFKNNVASLVINKVDH-SDVGEYTCKAENSVGAVASSAVLVIKERKLPPSFARKLKDVHE 113
Query: 310 NWG--KAMFCDPPTNYPGVNYYWARDYFPNFVEEDKRV---FVSYDGALYFSALEQIDAG 364
G A C + P + W +D +++D + F+ L +Q G
Sbjct: 114 TLGFPVAFECRINGSEP-LQVSWYKD--GELLKDDANLQTSFIHNVATLQILQTDQSHVG 170
Query: 365 NYSCNVQSKVSDTGRNG----------PFFPLKVFPHSNFQQLKFPNNFPKTFPEAPKAG 414
Y+C+ + + + PFF LK P S L G
Sbjct: 171 QYNCSASNPLGTASSSAKLTLSEHEVPPFFDLK--PVSVDLAL----------------G 212
Query: 415 DKVRLECVAFGYPVPSYNWTRRGSPL-PRNAY----FENFNRILTIPNVKVEDQGEYICR 469
+ +C G W + + P Y EN LT+ V D G+Y C
Sbjct: 213 ESGTFKCHVTGTAPIKITWAKDNREIRPGGNYKMTLVEN-TATLTVLKVTKGDAGQYTCY 271
Query: 470 ASNDRSALESSVTISIQAEPNFTIPLTDKHMDNQADLT-WTCEAFGVPDVTYSWFRN-GE 527
ASN S + +Q P F L + Q + T + C+ G P++ W+++ E
Sbjct: 272 ASNVAGKDSCSAQLGVQEPPRFIKKLEPSRIVKQDEHTRYECKIGGSPEIKVLWYKDETE 331
Query: 528 LLNSETLPLEDQDRYFIQDNVLTIRYLNPERDPAMYQCRAKNQLKTRYSSAQLRVLTLKP 587
+ S + F++ + Y D Y C A N + SS L+V P
Sbjct: 332 IQESSKFRMS-----FVESVAVLEMYNLSVEDSGDYTCEAHNAAGSASSSTSLKVKE-PP 385
Query: 588 SFKKRPLESETYAGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENG---NLL 644
F+K+P ET +G +V + C + P + W KD + SG + KI ++
Sbjct: 386 VFRKKPHPVETL--KGADVHLECELQGTPPFQVSWHKDKRELRSGKKYKIMSENFLTSIH 443
Query: 645 ISPVSRDDSGIYSCTATNVHGMDESKGRLIVLHGPSYYEQLPPKITIAAHRNLQLRCSAH 704
I V D G Y C A+N G D G + + P + ++L I+ +QL+ +
Sbjct: 444 ILNVDSADIGEYQCKASNDVGSDTCVGSITLKAPPRFVKKL-SDISTVVGEEVQLQATIE 502
Query: 705 TEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEITNASFADAGEYECVVKSTVG 764
E + VA W + I N + + NI L+ + A A+AG+Y C +K+ G
Sbjct: 503 GAEPISVA--WFKDKGEIVRESDNIWISYSENI--ATLQFSRAEPANAGKYTCQIKNEAG 558
Score = 74.7 bits (182), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 128/507 (25%), Positives = 180/507 (35%), Gaps = 98/507 (19%)
Query: 212 ITLSCYAGGYPNPSYEWFKE-DYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVEDRG 270
+ C G W+K+ + ++D ANL TL ++ D V G
Sbjct: 119 VAFECRINGSEPLQVSWYKDGELLKDD--ANLQTSFIHNVATL---QILQTDQSHV---G 170
Query: 271 SYHCKASNKFGSIISE-------------------SVQLAFGFIGEFNLK---RAPEIGN 308
Y+C ASN G+ S SV LA G G F AP
Sbjct: 171 QYNCSASNPLGTASSSAKLTLSEHEVPPFFDLKPVSVDLALGESGTFKCHVTGTAP--IK 228
Query: 309 QNWGKAMFCDPPTNYPGVNYYWARDYFPNFVEEDKRVFVSYDGALYFSALEQIDAGNYSC 368
W K D PG NY K V L + + DAG Y+C
Sbjct: 229 ITWAK----DNREIRPGGNY--------------KMTLVENTATLTVLKVTKGDAGQYTC 270
Query: 369 ---NVQSKVSDTGRNG----PFFPLKVFPHSNFQQLKFPNNFPKTFPEAPKAGDKVRLEC 421
NV K S + + G P F K+ P +Q + R EC
Sbjct: 271 YASNVAGKDSCSAQLGVQEPPRFIKKLEPSRIVKQ-----------------DEHTRYEC 313
Query: 422 VAFGYPVPSYNWTRRGSPLPRNAYFE----NFNRILTIPNVKVEDQGEYICRASNDRSAL 477
G P W + + + ++ F +L + N+ VED G+Y C A N +
Sbjct: 314 KIGGSPEIKVLWYKDETEIQESSKFRMSFVESVAVLEMYNLSVEDSGDYTCEAHNAAGSA 373
Query: 478 ESSVTISIQAEPNFTIPLTDKHMDNQADLTWTCEAFGVPDVTYSWFRNGELLNSETLPLE 537
SS ++ ++ P F AD+ CE G P SW ++ L S
Sbjct: 374 SSSTSLKVKEPPVFRKKPHPVETLKGADVHLECELQGTPPFQVSWHKDKRELRS------ 427
Query: 538 DQDRYFIQDNVLT-IRYLNPER-DPAMYQCRAKNQLKTRYSSAQLRVLTLK--PSFKKRP 593
+ + +N LT I LN + D YQC+A N + S + +TLK P F K+
Sbjct: 428 GKKYKIMSENFLTSIHILNVDSADIGEYQCKASNDVG---SDTCVGSITLKAPPRFVKKL 484
Query: 594 LESETYAGEGGNVTIFCNPEAAPKPKFVWKKD-GNIIGSGGRRKIFENGNLLISPVSRDD 652
+ T GE V + E A W KD G I+ I + N+ SR +
Sbjct: 485 SDISTVVGE--EVQLQATIEGAEPISVAWFKDKGEIVRESDNIWISYSENIATLQFSRAE 542
Query: 653 ---SGIYSCTATNVHGMDESKGRLIVL 676
+G Y+C N G E L VL
Sbjct: 543 PANAGKYTCQIKNEAGTQECFATLSVL 569
Score = 71.6 bits (174), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 99/407 (24%), Positives = 155/407 (38%), Gaps = 48/407 (11%)
Query: 190 PYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDK 249
P+F +P V L + T C+ G W K++ I P +
Sbjct: 198 PFFDLKPVSVDLALGESG-----TFKCHVTGTAPIKITWAKDN--------REIRPGGNY 244
Query: 250 RFTLSGGNLIINDPRQVE-DRGSYHCKASNKFGSIISESVQLAFGFIGEFNLKRAP-EIG 307
+ TL + + + D G Y C ASN G S S QL F K P I
Sbjct: 245 KMTLVENTATLTVLKVTKGDAGQYTCYASNVAGKD-SCSAQLGVQEPPRFIKKLEPSRIV 303
Query: 308 NQNWGKAMFCDPPTNYPGVNYYWARDYFPNFVEEDKRV---FVSYDGALYFSALEQIDAG 364
Q+ C + P + W +D ++E + FV L L D+G
Sbjct: 304 KQDEHTRYECKIGGS-PEIKVLWYKD--ETEIQESSKFRMSFVESVAVLEMYNLSVEDSG 360
Query: 365 NYSCNVQSKVSDTGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPEAPKAGDKVRLECVAF 424
+Y+C + + LKV F++ K P G V LEC
Sbjct: 361 DYTCEAHNAAGSASSS---TSLKVKEPPVFRK--------KPHPVETLKGADVHLECELQ 409
Query: 425 GYPVPSYNWTRRGSPLPRNAYF----ENFNRILTIPNVKVEDQGEYICRASNDRSALESS 480
G P +W + L + ENF + I NV D GEY C+ASND +
Sbjct: 410 GTPPFQVSWHKDKRELRSGKKYKIMSENFLTSIHILNVDSADIGEYQCKASNDVGSDTCV 469
Query: 481 VTISIQAEPNFTIPLTDKHMDNQADLTWTCEAFGVPDVTYSWFRN-GELLNSETLPLEDQ 539
+I+++A P F L+D ++ G ++ +WF++ GE++ +
Sbjct: 470 GSITLKAPPRFVKKLSDISTVVGEEVQLQATIEGAEPISVAWFKDKGEIVR-------ES 522
Query: 540 DRYFI--QDNVLTIRYLNPE-RDPAMYQCRAKNQLKTRYSSAQLRVL 583
D +I +N+ T+++ E + Y C+ KN+ T+ A L VL
Sbjct: 523 DNIWISYSENIATLQFSRAEPANAGKYTCQIKNEAGTQECFATLSVL 569
Score = 61.6 bits (148), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 67/293 (22%), Positives = 113/293 (38%), Gaps = 32/293 (10%)
Query: 489 PNFTIPLTDKHMDNQADLTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQ--D 546
P F PL +T C+ G P++ +W++ E L Y +Q +
Sbjct: 6 PYFIEPLEHVEAAIGEPITLQCKVDGTPEIRIAWYK-------EHTKLRSAPAYKMQFKN 58
Query: 547 NV--LTIRYLNPERDPAMYQCRAKNQLKTRYSSAQLRV--LTLKPSFKKRPLESETYAGE 602
NV L I ++ D Y C+A+N + SSA L + L PSF ++ + +
Sbjct: 59 NVASLVINKVD-HSDVGEYTCKAENSVGAVASSAVLVIKERKLPPSFARKL--KDVHETL 115
Query: 603 GGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRK---IFENGNLLISPVSRDDSGIYSCT 659
G V C + + W KDG ++ + I L I + G Y+C+
Sbjct: 116 GFPVAFECRINGSEPLQVSWYKDGELLKDDANLQTSFIHNVATLQILQTDQSHVGQYNCS 175
Query: 660 ATNVHGMDESKGRLIVLHG--PSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTH 717
A+N G S +L + P +++ P + +A + +C H + W
Sbjct: 176 ASNPLGTASSSAKLTLSEHEVPPFFDLKPVSVDLALGESGTFKC--HVTGTAPIKITWAK 233
Query: 718 NGVRI---GNMDLNELETPNINIDGGLLEITNASFADAGEYECVVKSTVGKIS 767
+ I GN + +E + L + + DAG+Y C + GK S
Sbjct: 234 DNREIRPGGNYKMTLVE------NTATLTVLKVTKGDAGQYTCYASNVAGKDS 280
>pdb|3S97|C Chain C, Ptprz Cntn1 Complex
pdb|3S97|D Chain D, Ptprz Cntn1 Complex
Length = 201
Score = 105 bits (263), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 67/199 (33%), Positives = 95/199 (47%), Gaps = 6/199 (3%)
Query: 293 GFIGEFNLKRAPEIG-NQNWGKAMFCDPPTNYPG-VNYYWARDYFPNFVEEDKRVFVSY- 349
G++ F + PE+ + G + CDPP ++P ++Y W + FP F+ DKR FVS
Sbjct: 5 GYLDPFPPEERPEVRVKEGKGMVLLCDPPYHFPDDLSYRWLLNEFPVFITMDKRRFVSQT 64
Query: 350 DGALYFSALEQIDAGNYSCNVQSKVSDTGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPE 409
+G LY + +E D GNYSC V S F PL P + +P + F +
Sbjct: 65 NGNLYIANVEASDKGNYSCFVSSPSITKSVFSKFIPLIPIPERTTK--PYPADIVVQFKD 122
Query: 410 A-PKAGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYFENFNRILTIPNVKVEDQGEYIC 468
G V LEC A G PVP W + P+P A +L I N+++ED+G Y C
Sbjct: 123 VYALMGQNVTLECFALGNPVPDIRWRKVLEPMPSTAEISTSGAVLKIFNIQLEDEGIYEC 182
Query: 469 RASNDRSALESSVTISIQA 487
A N R + I +QA
Sbjct: 183 EAENIRGKDKHQARIYVQA 201
Score = 47.4 bits (111), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 45/174 (25%), Positives = 66/174 (37%), Gaps = 28/174 (16%)
Query: 517 DVTYSWFRNGELLNSETLPLEDQDRYFIQDNVLTIRYLNPE-RDPAMYQCRAKNQLKTRY 575
D++Y W LLN + + R F+ + N E D Y C + T+
Sbjct: 39 DLSYRW-----LLNEFPVFITMDKRRFVSQTNGNLYIANVEASDKGNYSCFVSSPSITKS 93
Query: 576 SSAQLRVLTLKPSFKKRPLESE-------TYAGEGGNVTIFCNPEAAPKPKFVWKK---- 624
++ L P +P ++ YA G NVT+ C P P W+K
Sbjct: 94 VFSKFIPLIPIPERTTKPYPADIVVQFKDVYALMGQNVTLECFALGNPVPDIRWRKVLEP 153
Query: 625 ---DGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTATNVHGMDESKGRLIV 675
I SG KIF + +D GIY C A N+ G D+ + R+ V
Sbjct: 154 MPSTAEISTSGAVLKIFN--------IQLEDEGIYECEAENIRGKDKHQARIYV 199
Score = 37.4 bits (85), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 40/89 (44%), Gaps = 15/89 (16%)
Query: 196 PTDVVFDLSKRSIL--NDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPL-SDKRFT 252
P D+V L ++TL C+A G P P W K +++P+ S +
Sbjct: 113 PADIVVQFKDVYALMGQNVTLECFALGNPVPDIRWRK-----------VLEPMPSTAEIS 161
Query: 253 LSGGNLIINDPRQVEDRGSYHCKASNKFG 281
SG L I + Q+ED G Y C+A N G
Sbjct: 162 TSGAVLKIFN-IQLEDEGIYECEAENIRG 189
>pdb|2V5R|A Chain A, Structural Basis For Dscam Isoform Specificity
pdb|2V5R|B Chain B, Structural Basis For Dscam Isoform Specificity
Length = 391
Score = 97.8 bits (242), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 102/427 (23%), Positives = 167/427 (39%), Gaps = 70/427 (16%)
Query: 188 RGPYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLS 247
+GP F+K+PT+ + D S + + C A G P P W + D + +
Sbjct: 2 KGPVFLKEPTNRI-DFSNST---GAEIECKASGNPMPEIIWIRSD-------GTAVGDVP 50
Query: 248 DKRFTLSGGNLII-----NDPRQVEDRGSYHCKASNKFGSIISESVQLAFGFIGEFNLKR 302
R S G L+ D RQ Y C A N+FGSIIS V + I + +
Sbjct: 51 GLRQISSDGKLVFPPFRAEDYRQEVHAQVYACLARNQFGSIISRDVHVRAVVIQSYESEA 110
Query: 303 APEIGNQNWGKAMFCDPPT---NYPGVNYYW---ARDYFPN-FVEEDKRVFVSYDGALYF 355
E + M C+ P+ ++ V+ + R+Y+PN E D + V G L+
Sbjct: 111 DNEYVIRGNSVVMKCEIPSYVADFVFVDLWLDSEGRNYYPNNAAETDGKYLVLPSGELHI 170
Query: 356 SALEQIDA-GNYSCNVQSKVSDTGR-------------NGPFFPLKVFPHSNFQQLKFPN 401
+ D +Y C + +++ R G P KV P Q +
Sbjct: 171 REVGPEDGYKSYQCRTKHRLTGETRLSATKGRLVITEPVGSVRP-KVNPQDKHQFIDV-- 227
Query: 402 NFPKTFPEAPKAGDKVRLECVAFGYPVPSYNW------TRRGSPLPRNAYFENFNRILTI 455
+ L C+A YP PS+ W T R + N + + L I
Sbjct: 228 ----------ELASSYSLLCMAQSYPTPSFRWYKFIEGTTRKQAVVLNDRVKQVSGTLII 277
Query: 456 PNVKVEDQGEYICRASNDRSALESSVTISIQAEPNFTIPLTDKHMDNQADLTWTCEAFGV 515
+ VED G+Y+C +N +++ A + I + +D +TC+ G
Sbjct: 278 KDAVVEDSGKYLCVVNNSVGGESVETVLTVTAPLSAKIDPPTQTVDFGRPAVFTCQYTGN 337
Query: 516 PDVTYSWFRNGELLNSETLPLEDQDRYFIQDNVLTIRYLNPERDPAMYQCRAKNQLKTRY 575
P T SW ++G+ + ++VL I + E D MYQC +N ++
Sbjct: 338 PIKTVSWMKDGKAIGH-------------SESVLRIESVKKE-DKGMYQCFVRNDRESAE 383
Query: 576 SSAQLRV 582
+SA+L++
Sbjct: 384 ASAELKL 390
Score = 31.6 bits (70), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 42/188 (22%), Positives = 65/188 (34%), Gaps = 30/188 (15%)
Query: 497 DKHMDNQADL----TWTCEAFGVPDVTYSWFRNGE-LLNSETLPLEDQDR-----YFIQD 546
DKH +L + C A P ++ W++ E + + L D+ + I+D
Sbjct: 220 DKHQFIDVELASSYSLLCMAQSYPTPSFRWYKFIEGTTRKQAVVLNDRVKQVSGTLIIKD 279
Query: 547 NVLTIRYLNPERDPAMYQCRAKNQLKTRYSSAQLRVLTLKPSFKKRPLESETYAGEGGNV 606
V+ D Y C N + VLT+ + ++ T + G
Sbjct: 280 AVV--------EDSGKYLCVVNNSVGGESVET---VLTVTAPLSAK-IDPPTQTVDFGRP 327
Query: 607 TIF-CNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTATNVHG 665
+F C P W KDG IG L I V ++D G+Y C N
Sbjct: 328 AVFTCQYTGNPIKTVSWMKDGKAIG-------HSESVLRIESVKKEDKGMYQCFVRNDRE 380
Query: 666 MDESKGRL 673
E+ L
Sbjct: 381 SAEASAEL 388
Score = 30.0 bits (66), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 56/236 (23%), Positives = 90/236 (38%), Gaps = 36/236 (15%)
Query: 562 MYQCRAKNQLKTRYS-SAQLRVLTLKPSFKKRPLESET---YAGEGGNVTIFCN-PEAAP 616
+Y C A+NQ + S +R + ++ ESE Y G +V + C P
Sbjct: 79 VYACLARNQFGSIISRDVHVRAVVIQS------YESEADNEYVIRGNSVVMKCEIPSYVA 132
Query: 617 KPKFV--WKKD-------GNIIGSGGRRKIFENGNLLISPVSRDDS-GIYSCTA----TN 662
FV W N + G+ + +G L I V +D Y C T
Sbjct: 133 DFVFVDLWLDSEGRNYYPNNAAETDGKYLVLPSGELHIREVGPEDGYKSYQCRTKHRLTG 192
Query: 663 VHGMDESKGRLIVLHG-PSYYEQLPPK-----ITIAAHRNLQLRCSAHTEELLDVA-YIW 715
+ +KGRL++ S ++ P+ I + + L C A + Y +
Sbjct: 193 ETRLSATKGRLVITEPVGSVRPKVNPQDKHQFIDVELASSYSLLCMAQSYPTPSFRWYKF 252
Query: 716 THNGVRIGNMDLNELETPNINIDGGLLEITNASFADAGEYECVVKSTVGKISTKTT 771
R + LN+ + G L I +A D+G+Y CVV ++VG S +T
Sbjct: 253 IEGTTRKQAVVLND----RVKQVSGTLIIKDAVVEDSGKYLCVVNNSVGGESVETV 304
>pdb|3LAF|A Chain A, Structure Of Dcc, A Netrin-1 Receptor
Length = 403
Score = 92.8 bits (229), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 105/420 (25%), Positives = 168/420 (40%), Gaps = 71/420 (16%)
Query: 191 YFIKQPTDVVFDLSKRSILNDITLSCYA-GGYPNPSYEWFKEDYVQDRLVANLIDPLSDK 249
+F+ +P+D V + R ++ L+C A P +W K+ + L + D+
Sbjct: 23 HFVSEPSDAV---TMRG--GNVLLNCSAESDRGVPVIKWKKDGLI-------LALGMDDR 70
Query: 250 RFTLSGGNLIINDPRQVE----DRGSYHCKAS-NKFGSIISESVQLAFG----------- 293
+ L G+L+I + D G Y C+AS GSIIS + ++
Sbjct: 71 KQQLPNGSLLIQNILHSRHHKPDEGLYQCEASLGDSGSIISRTAKVMVAGPLRFLSQTES 130
Query: 294 ---FIGEFNLKRAPEIGNQNWGKAMFCDPPTNYPGVNYYWARDYFP-NFVEEDKRVFVSY 349
F+G+ L + IG+ P +W ++ N + D RV V
Sbjct: 131 ITAFMGDTVLLKCEVIGD---------------PMPTIHWQKNQQDLNPIPGDSRVVVLP 175
Query: 350 DGALYFSALEQIDAGNYSCNVQSKVSDTGRNGPFFPLKVFP----HSNFQQLKFPNNFPK 405
GAL S L+ D+G Y C+ ++ S R G +++ H L+ P+N
Sbjct: 176 SGALQISRLQPGDSGVYRCSARNPAST--RTGNEAEVRILSDPGLHRQLYFLQRPSNVIA 233
Query: 406 TFPEAPKAGDKVRLECVAFGYPVPSYNWTRRGS--PLPRNAYFENFNRILTIPNVKVEDQ 463
G LEC GYP PS+ W R L Y L I NV +D
Sbjct: 234 I------EGKDAVLECCVSGYPPPSFTWLRGEEVIQLRSKKYSLLGGSNLLISNVTDDDS 287
Query: 464 GEYICRASNDRSALESSVTISIQAEPNFTIPLTDKHMDNQADLTWTCEAFGVPDVTYSWF 523
G Y C + + +S +++ P F ++ + D+ + C G P T +W
Sbjct: 288 GTYTCVVTYKNENISASAELTVLVPPWFLNHPSNLYAYESMDIEFECAVSGKPVPTVNWM 347
Query: 524 RNGELLNSETLPLEDQDRYFIQDNVLTIRYLNPER-DPAMYQCRAKNQLKTRYSSAQLRV 582
+NG+++ +P + YF +R L + D YQC A+N+ SSAQL V
Sbjct: 348 KNGDVV----IPSD----YFQIVGGSNLRILGVVKSDEGFYQCVAENEAGNAQSSAQLIV 399
Score = 84.3 bits (207), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 83/313 (26%), Positives = 132/313 (42%), Gaps = 26/313 (8%)
Query: 462 DQGEYICRAS-NDRSALESSVTISIQAEPNFTIPLTDKHMDNQAD-LTWTCEAFGVPDVT 519
D+G Y C AS D ++ S + A P + T+ D + CE G P T
Sbjct: 93 DEGLYQCEASLGDSGSIISRTAKVMVAGPLRFLSQTESITAFMGDTVLLKCEVIGDPMPT 152
Query: 520 YSWFRNGELLNSETLPLEDQDRYFIQ-DNVLTIRYLNPERDPAMYQCRAKNQLKTRYSS- 577
W +N + LN P+ R + L I L P D +Y+C A+N TR +
Sbjct: 153 IHWQKNQQDLN----PIPGDSRVVVLPSGALQISRLQPG-DSGVYRCSARNPASTRTGNE 207
Query: 578 AQLRVLT-----LKPSFKKRPLESETYAGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSG 632
A++R+L+ + F +RP S A EG + + C P P F W + +I
Sbjct: 208 AEVRILSDPGLHRQLYFLQRP--SNVIAIEGKDAVLECCVSGYPPPSFTWLRGEEVIQLR 265
Query: 633 GRR-KIFENGNLLISPVSRDDSGIYSCTATNVHGMDESKGRLIVLHGPSYYEQLPPKITI 691
++ + NLLIS V+ DDSG Y+C T + + L VL P ++ P +
Sbjct: 266 SKKYSLLGGSNLLISNVTDDDSGTYTCVVTYKNENISASAELTVLV-PPWFLNHPSNLYA 324
Query: 692 AAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEITNASFAD 751
+++ C+ + + V W NG + D ++ + G L I +D
Sbjct: 325 YESMDIEFECAVSGKPVPTVN--WMKNGDVVIPSDYFQI------VGGSNLRILGVVKSD 376
Query: 752 AGEYECVVKSTVG 764
G Y+CV ++ G
Sbjct: 377 EGFYQCVAENEAG 389
Score = 78.2 bits (191), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 72/273 (26%), Positives = 114/273 (41%), Gaps = 20/273 (7%)
Query: 414 GDKVRLECVAFGYPVPSYNWTRRG---SPLPRNAYFENF-NRILTIPNVKVEDQGEYICR 469
GD V L+C G P+P+ +W + +P+P ++ + L I ++ D G Y C
Sbjct: 136 GDTVLLKCEVIGDPMPTIHWQKNQQDLNPIPGDSRVVVLPSGALQISRLQPGDSGVYRCS 195
Query: 470 ASNDRSALESS-VTISIQAEPNFTIPL------TDKHMDNQADLTWTCEAFGVPDVTYSW 522
A N S + + I ++P L ++ D C G P +++W
Sbjct: 196 ARNPASTRTGNEAEVRILSDPGLHRQLYFLQRPSNVIAIEGKDAVLECCVSGYPPPSFTW 255
Query: 523 FRNGELLNSETLPLEDQDRYFIQDNVLTIRYLNPERDPAMYQCRAKNQLKTRYSSAQLRV 582
R GE E + L + + + L I + + D Y C + + +SA+L V
Sbjct: 256 LR-GE----EVIQLRSKKYSLLGGSNLLISNVT-DDDSGTYTCVVTYKNENISASAELTV 309
Query: 583 LTLKPSFKKRPLESETYAGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGN 642
L + P F P S YA E ++ C P P W K+G+++ +I N
Sbjct: 310 L-VPPWFLNHP--SNLYAYESMDIEFECAVSGKPVPTVNWMKNGDVVIPSDYFQIVGGSN 366
Query: 643 LLISPVSRDDSGIYSCTATNVHGMDESKGRLIV 675
L I V + D G Y C A N G +S +LIV
Sbjct: 367 LRILGVVKSDEGFYQCVAENEAGNAQSSAQLIV 399
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 46/176 (26%), Positives = 77/176 (43%), Gaps = 18/176 (10%)
Query: 596 SETYAGEGGNVTIFCNPEA-APKPKFVWKKDGNIIGSG--GRRKIFENGNLLISPV---- 648
S+ GGNV + C+ E+ P WKKDG I+ G R++ NG+LLI +
Sbjct: 29 SDAVTMRGGNVLLNCSAESDRGVPVIKWKKDGLILALGMDDRKQQLPNGSLLIQNILHSR 88
Query: 649 -SRDDSGIYSCTAT-NVHGMDESKGRLIVLHGPSYYEQLPPKITIAAHRNLQLRCSAHTE 706
+ D G+Y C A+ G S+ +++ GP + IT + L+C +
Sbjct: 89 HHKPDEGLYQCEASLGDSGSIISRTAKVMVAGPLRFLSQTESITAFMGDTVLLKCEVIGD 148
Query: 707 ELLDVAYIWTHNGVRIGNMDLNEL--ETPNINIDGGLLEITNASFADAGEYECVVK 760
+ + W N DLN + ++ + + G L+I+ D+G Y C +
Sbjct: 149 PMPTIH--WQKN-----QQDLNPIPGDSRVVVLPSGALQISRLQPGDSGVYRCSAR 197
>pdb|2V5M|A Chain A, Structural Basis For Dscam Isoform Specificity
Length = 388
Score = 91.7 bits (226), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 101/418 (24%), Positives = 161/418 (38%), Gaps = 55/418 (13%)
Query: 188 RGPYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLS 247
+GP F+K+PT+ + D S + + C A G P P W + D V L S
Sbjct: 2 KGPVFLKEPTNRI-DFSNST---GAEIECKASGNPMPEIIWIRSDGTAVGDVPGLRQISS 57
Query: 248 DKRFTLSGGNLIINDPRQVEDRGSYHCKASNKFGSIISESVQL--AFGFIGEFNLKRAPE 305
D + D RQ Y C A N+FGSIIS V + E ++ +
Sbjct: 58 DGKLVFP--PFRAEDYRQEVHAQVYACLARNQFGSIISRDVHVRAVVAQYYEADVNKEHV 115
Query: 306 I-GNQNWGKAMFCDPPTNYPGVNYYWARD----YFPNFVEEDKRVFVSYDGALYFSALEQ 360
I GN K + ++ V W D YFP E D + V G L+ +
Sbjct: 116 IRGNSAVIKCLIPSFVADFVEV-VSWHTDEEENYFPG-AEYDGKYLVLPSGELHIREVGP 173
Query: 361 IDA-GNYSCNVQSKVSDTGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPEAPKAGDK--- 416
D +Y C + +++ R + +L + P P K
Sbjct: 174 EDGYKSYQCRTKHRLTGETRLS----------ATKGRLVITEPISSSAPRTPALVQKPLE 223
Query: 417 ------VRLECVAFGYPVPSYNW------TRRGSPLPRNAYFENFNRILTIPNVKVEDQG 464
+ L C A G+P PS+ W T R + N + + L I + VED G
Sbjct: 224 LMVAHTISLLCPAQGFPAPSFRWYKFIEGTTRKQAVVLNDRVKQVSGTLIIKDAVVEDSG 283
Query: 465 EYICRASNDRSALESSVTISIQAEPNFTIPLTDKHMDNQADLTWTCEAFGVPDVTYSWFR 524
+Y+C +N +++ A + I + +D +TC+ G P T SW +
Sbjct: 284 KYLCVVNNSVGGESVETVLTVTAPLSAKIDPPTQTVDFGRPAVFTCQYTGNPIKTVSWMK 343
Query: 525 NGELLNSETLPLEDQDRYFIQDNVLTIRYLNPERDPAMYQCRAKNQLKTRYSSAQLRV 582
+G+ + ++VL I + E D MYQC +N ++ +SA+L++
Sbjct: 344 DGKAIGH-------------SESVLRIESVKKE-DKGMYQCFVRNDRESAEASAELKL 387
Score = 62.4 bits (150), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 88/375 (23%), Positives = 143/375 (38%), Gaps = 58/375 (15%)
Query: 419 LECVAFGYPVPSYNWTRR-GSPLPRNAYFENFNR--ILTIPNVKVEDQGE------YICR 469
+EC A G P+P W R G+ + + L P + ED + Y C
Sbjct: 24 IECKASGNPMPEIIWIRSDGTAVGDVPGLRQISSDGKLVFPPFRAEDYRQEVHAQVYACL 83
Query: 470 ASND-RSALESSVTISIQAEPNFTIPLTDKHM--DNQADLTWTCEAFGVPDV-TYSWFRN 525
A N S + V + + + +H+ N A + +F V SW +
Sbjct: 84 ARNQFGSIISRDVHVRAVVAQYYEADVNKEHVIRGNSAVIKCLIPSFVADFVEVVSWHTD 143
Query: 526 GELLNSETLPLEDQD-RYFIQ-DNVLTIRYLNPERDPAMYQCRAKNQL--KTRYSSAQLR 581
E P + D +Y + L IR + PE YQCR K++L +TR S+ + R
Sbjct: 144 EE---ENYFPGAEYDGKYLVLPSGELHIREVGPEDGYKSYQCRTKHRLTGETRLSATKGR 200
Query: 582 VLTLKP---------SFKKRPLESETYAGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSG 632
++ +P + ++PLE +++ C + P P F W K I G+
Sbjct: 201 LVITEPISSSAPRTPALVQKPLELMV----AHTISLLCPAQGFPAPSFRWYK--FIEGTT 254
Query: 633 GRRKIFEN-------GNLLISPVSRDDSGIYSCTATNVHGMDESKGRLIVLHGPSYYEQL 685
++ + N G L+I +DSG Y C N G ES ++ + P +
Sbjct: 255 RKQAVVLNDRVKQVSGTLIIKDAVVEDSGKYLCVVNNSVG-GESVETVLTVTAPLSAKID 313
Query: 686 PPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEIT 745
PP T+ R C + V+ W +G IG+ + +L I
Sbjct: 314 PPTQTVDFGRPAVFTCQYTGNPIKTVS--WMKDGKAIGHSE-------------SVLRIE 358
Query: 746 NASFADAGEYECVVK 760
+ D G Y+C V+
Sbjct: 359 SVKKEDKGMYQCFVR 373
Score = 34.3 bits (77), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 39/175 (22%), Positives = 62/175 (35%), Gaps = 26/175 (14%)
Query: 506 LTWTCEAFGVPDVTYSWFRNGE-LLNSETLPLEDQDR-----YFIQDNVLTIRYLNPERD 559
++ C A G P ++ W++ E + + L D+ + I+D V+ D
Sbjct: 230 ISLLCPAQGFPAPSFRWYKFIEGTTRKQAVVLNDRVKQVSGTLIIKDAVV--------ED 281
Query: 560 PAMYQCRAKNQLKTRYSSAQLRVLTLKPSFKKRPLESETYAGEGGNVTIF-CNPEAAPKP 618
Y C N + VLT+ + ++ T + G +F C P
Sbjct: 282 SGKYLCVVNNSVGGESVET---VLTVTAPLSAK-IDPPTQTVDFGRPAVFTCQYTGNPIK 337
Query: 619 KFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTATNVHGMDESKGRL 673
W KDG IG L I V ++D G+Y C N E+ L
Sbjct: 338 TVSWMKDGKAIG-------HSESVLRIESVKKEDKGMYQCFVRNDRESAEASAEL 385
Score = 33.9 bits (76), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 41/154 (26%), Positives = 62/154 (40%), Gaps = 23/154 (14%)
Query: 633 GRRKIFENGNLLISPVSRDDS-GIYSCTA----TNVHGMDESKGRLIVLHGPSYYEQLPP 687
G+ + +G L I V +D Y C T + +KGRL++ S P
Sbjct: 156 GKYLVLPSGELHIREVGPEDGYKSYQCRTKHRLTGETRLSATKGRLVITEPIS---SSAP 212
Query: 688 KITIAAHRNLQLRCSAHTEELLDVA----------YIWTHNGVRIGNMDLNELETPNINI 737
+ + L+L AHT LL A Y + R + LN+ +
Sbjct: 213 RTPALVQKPLELMV-AHTISLLCPAQGFPAPSFRWYKFIEGTTRKQAVVLND----RVKQ 267
Query: 738 DGGLLEITNASFADAGEYECVVKSTVGKISTKTT 771
G L I +A D+G+Y CVV ++VG S +T
Sbjct: 268 VSGTLIIKDAVVEDSGKYLCVVNNSVGGESVETV 301
>pdb|2V5S|A Chain A, Structural Basis For Dscam Isoform Specificity
pdb|2V5S|B Chain B, Structural Basis For Dscam Isoform Specificity
Length = 394
Score = 91.3 bits (225), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 101/418 (24%), Positives = 161/418 (38%), Gaps = 55/418 (13%)
Query: 188 RGPYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLS 247
+GP F+K+PT+ + D S + + C A G P P W + D V L S
Sbjct: 8 KGPVFLKEPTNRI-DFSNST---GAEIECKASGNPMPEIIWIRSDGTAVGDVPGLRQISS 63
Query: 248 DKRFTLSGGNLIINDPRQVEDRGSYHCKASNKFGSIISESVQL--AFGFIGEFNLKRAPE 305
D + D RQ Y C A N+FGSIIS V + E ++ +
Sbjct: 64 DGKLVFP--PFRAEDYRQEVHAQVYACLARNQFGSIISRDVHVRAVVAQYYEADVNKEHV 121
Query: 306 I-GNQNWGKAMFCDPPTNYPGVNYYWARD----YFPNFVEEDKRVFVSYDGALYFSALEQ 360
I GN K + ++ V W D YFP E D + V G L+ +
Sbjct: 122 IRGNSAVIKCLIPSFVADFVEV-VSWHTDEEENYFPG-AEYDGKYLVLPSGELHIREVGP 179
Query: 361 IDA-GNYSCNVQSKVSDTGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPEAPKAGDK--- 416
D +Y C + +++ R + +L + P P K
Sbjct: 180 EDGYKSYQCRTKHRLTGETRLS----------ATKGRLVITEPISSSAPRTPALVQKPLE 229
Query: 417 ------VRLECVAFGYPVPSYNW------TRRGSPLPRNAYFENFNRILTIPNVKVEDQG 464
+ L C A G+P PS+ W T R + N + + L I + VED G
Sbjct: 230 LMVAHTISLLCPAQGFPAPSFRWYKFIEGTTRKQAVVLNDRVKQVSGTLIIKDAVVEDSG 289
Query: 465 EYICRASNDRSALESSVTISIQAEPNFTIPLTDKHMDNQADLTWTCEAFGVPDVTYSWFR 524
+Y+C +N +++ A + I + +D +TC+ G P T SW +
Sbjct: 290 KYLCVVNNSVGGESVETVLTVTAPLSAKIDPPTQTVDFGRPAVFTCQYTGNPIKTVSWMK 349
Query: 525 NGELLNSETLPLEDQDRYFIQDNVLTIRYLNPERDPAMYQCRAKNQLKTRYSSAQLRV 582
+G+ + ++VL I + E D MYQC +N ++ +SA+L++
Sbjct: 350 DGKAIGH-------------SESVLRIESVKKE-DKGMYQCFVRNDRESAEASAELKL 393
Score = 62.4 bits (150), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 88/375 (23%), Positives = 143/375 (38%), Gaps = 58/375 (15%)
Query: 419 LECVAFGYPVPSYNWTRR-GSPLPRNAYFENFNR--ILTIPNVKVEDQGE------YICR 469
+EC A G P+P W R G+ + + L P + ED + Y C
Sbjct: 30 IECKASGNPMPEIIWIRSDGTAVGDVPGLRQISSDGKLVFPPFRAEDYRQEVHAQVYACL 89
Query: 470 ASND-RSALESSVTISIQAEPNFTIPLTDKHM--DNQADLTWTCEAFGVPDV-TYSWFRN 525
A N S + V + + + +H+ N A + +F V SW +
Sbjct: 90 ARNQFGSIISRDVHVRAVVAQYYEADVNKEHVIRGNSAVIKCLIPSFVADFVEVVSWHTD 149
Query: 526 GELLNSETLPLEDQD-RYFIQ-DNVLTIRYLNPERDPAMYQCRAKNQL--KTRYSSAQLR 581
E P + D +Y + L IR + PE YQCR K++L +TR S+ + R
Sbjct: 150 EE---ENYFPGAEYDGKYLVLPSGELHIREVGPEDGYKSYQCRTKHRLTGETRLSATKGR 206
Query: 582 VLTLKP---------SFKKRPLESETYAGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSG 632
++ +P + ++PLE +++ C + P P F W K I G+
Sbjct: 207 LVITEPISSSAPRTPALVQKPLELMV----AHTISLLCPAQGFPAPSFRWYK--FIEGTT 260
Query: 633 GRRKIFEN-------GNLLISPVSRDDSGIYSCTATNVHGMDESKGRLIVLHGPSYYEQL 685
++ + N G L+I +DSG Y C N G ES ++ + P +
Sbjct: 261 RKQAVVLNDRVKQVSGTLIIKDAVVEDSGKYLCVVNNSVG-GESVETVLTVTAPLSAKID 319
Query: 686 PPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEIT 745
PP T+ R C + V+ W +G IG+ + +L I
Sbjct: 320 PPTQTVDFGRPAVFTCQYTGNPIKTVS--WMKDGKAIGHSE-------------SVLRIE 364
Query: 746 NASFADAGEYECVVK 760
+ D G Y+C V+
Sbjct: 365 SVKKEDKGMYQCFVR 379
Score = 34.3 bits (77), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 41/154 (26%), Positives = 62/154 (40%), Gaps = 23/154 (14%)
Query: 633 GRRKIFENGNLLISPVSRDDS-GIYSCTA----TNVHGMDESKGRLIVLHGPSYYEQLPP 687
G+ + +G L I V +D Y C T + +KGRL++ S P
Sbjct: 162 GKYLVLPSGELHIREVGPEDGYKSYQCRTKHRLTGETRLSATKGRLVITEPIS---SSAP 218
Query: 688 KITIAAHRNLQLRCSAHTEELLDVA----------YIWTHNGVRIGNMDLNELETPNINI 737
+ + L+L AHT LL A Y + R + LN+ +
Sbjct: 219 RTPALVQKPLELMV-AHTISLLCPAQGFPAPSFRWYKFIEGTTRKQAVVLND----RVKQ 273
Query: 738 DGGLLEITNASFADAGEYECVVKSTVGKISTKTT 771
G L I +A D+G+Y CVV ++VG S +T
Sbjct: 274 VSGTLIIKDAVVEDSGKYLCVVNNSVGGESVETV 307
Score = 33.9 bits (76), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 39/175 (22%), Positives = 62/175 (35%), Gaps = 26/175 (14%)
Query: 506 LTWTCEAFGVPDVTYSWFRNGE-LLNSETLPLEDQDR-----YFIQDNVLTIRYLNPERD 559
++ C A G P ++ W++ E + + L D+ + I+D V+ D
Sbjct: 236 ISLLCPAQGFPAPSFRWYKFIEGTTRKQAVVLNDRVKQVSGTLIIKDAVV--------ED 287
Query: 560 PAMYQCRAKNQLKTRYSSAQLRVLTLKPSFKKRPLESETYAGEGGNVTIF-CNPEAAPKP 618
Y C N + VLT+ + ++ T + G +F C P
Sbjct: 288 SGKYLCVVNNSVGGESVET---VLTVTAPLSAK-IDPPTQTVDFGRPAVFTCQYTGNPIK 343
Query: 619 KFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTATNVHGMDESKGRL 673
W KDG IG L I V ++D G+Y C N E+ L
Sbjct: 344 TVSWMKDGKAIG-------HSESVLRIESVKKEDKGMYQCFVRNDRESAEASAEL 391
>pdb|1E07|A Chain A, Model Of Human Carcinoembryonic Antigen By Homology
Modelling And Curve-Fitting To Experimental Solution
Scattering Data
Length = 642
Score = 88.2 bits (217), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 90/371 (24%), Positives = 165/371 (44%), Gaps = 60/371 (16%)
Query: 412 KAGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYFENFNRILTIPNVKVEDQGEYICRAS 471
++G+ + L C A P Y+W G+ F+ + L IPN+ V + G Y C+A
Sbjct: 216 RSGENLNLSCHAASNPPAQYSWFVNGT-------FQQSTQELFIPNITVNNSGSYTCQAH 268
Query: 472 NDRSALESS--VTISIQAEP--NFTIPLTDKHMDNQADLTWTCEAFGVPDVTYSWFRNGE 527
N + L + TI++ AEP F ++++ + TCE + + TY W+
Sbjct: 269 NSDTGLNRTTVTTITVYAEPPKPFITSNNSNPVEDEDAVALTCEP-EIQNTTYLWW---- 323
Query: 528 LLNSETLPLEDQDRYFIQDNVLTIRYLNPERDPAMYQCRAKNQLKTRYSS-AQLRVL--- 583
+N+++LP+ + + + LT+ + D Y+C +N+L +S L VL
Sbjct: 324 -VNNQSLPVSPRLQLSNDNRTLTLLSVT-RNDVGPYECGIQNELSVDHSDPVILNVLYGP 381
Query: 584 ---TLKPSFKKRPLESETYAGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFEN 640
T+ PS+ TY G N+++ C+ + P ++ W DGNI ++ E
Sbjct: 382 DDPTISPSY--------TYYRPGVNLSLSCHAASNPPAQYSWLIDGNI-----QQHTQE- 427
Query: 641 GNLLISPVSRDDSGIYSCTATN-VHGMDESKGRLIVLHGPSYYEQLP-PKITIAAHRNLQ 698
L IS ++ +SG+Y+C A N G + + I + +LP P I+ + ++
Sbjct: 428 --LFISNITEKNSGLYTCQANNSASGHSRTTVKTITVSA-----ELPKPSISSNNSKPVE 480
Query: 699 LRCSAH---TEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGG--LLEITNASFADAG 753
+ + E + Y+W NG + +P + + G L + N + DA
Sbjct: 481 DKDAVAFTCEPEAQNTTYLWWVNGQSLP-------VSPRLQLSNGNRTLTLFNVTRNDAR 533
Query: 754 EYECVVKSTVG 764
Y C ++++V
Sbjct: 534 AYVCGIQNSVS 544
Score = 70.5 bits (171), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 116/493 (23%), Positives = 183/493 (37%), Gaps = 72/493 (14%)
Query: 250 RFTLSGGN---LIINDPRQVEDRGSYHCKASNKFGSIISESVQLAFGFIGEFNLKRAPEI 306
R LS GN + N R D SY C+ N + S+SV L + + AP I
Sbjct: 156 RLQLSNGNRTLTLFNVTR--NDTASYKCETQNPVSARRSDSVILNVLYGPD-----APTI 208
Query: 307 GNQNWG------KAMFCDPPTNYPGVNYYWARDYFPNFVEEDKRVFVSYDGALYFSALEQ 360
N + C +N P ++ F +E L+ +
Sbjct: 209 SPLNTSYRSGENLNLSCHAASNPPAQYSWFVNGTFQQSTQE-----------LFIPNITV 257
Query: 361 IDAGNYSCNVQSKVSDTGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPEAPKAG-----D 415
++G+Y+C Q+ SDTG N + + PK F + + D
Sbjct: 258 NNSGSYTC--QAHNSDTGLN----------RTTVTTITVYAEPPKPFITSNNSNPVEDED 305
Query: 416 KVRLECVAFGYPVPSYNWTRRGS-PLPRNAYFENFNRILTIPNVKVEDQGEYICRASNDR 474
V L C W S P+ N NR LT+ +V D G Y C N+
Sbjct: 306 AVALTCEPEIQNTTYLWWVNNQSLPVSPRLQLSNDNRTLTLLSVTRNDVGPYECGIQNEL 365
Query: 475 SALESS-VTISIQAEPNF-TIPLTDKHMDNQADLTWTCEAFGVPDVTYSWFRNGELLNSE 532
S S V +++ P+ TI + + +L+ +C A P YSW +G +
Sbjct: 366 SVDHSDPVILNVLYGPDDPTISPSYTYYRPGVNLSLSCHAASNPPAQYSWLIDGNIQ--- 422
Query: 533 TLPLEDQDRYFIQDNVLTIRYLNPERDPAMYQCRAKNQLKTRYSSAQLRVLTLKPSFKKR 592
+ FI + E++ +Y C+A N + +S ++ +T+ K
Sbjct: 423 ----QHTQELFISNIT--------EKNSGLYTCQANNS-ASGHSRTTVKTITVSAELPKP 469
Query: 593 PLESETY--AGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGN--LLISPV 648
+ S + V C PEA ++W +G + R ++ NGN L + V
Sbjct: 470 SISSNNSKPVEDKDAVAFTCEPEAQ-NTTYLWWVNGQSLPVSPRLQL-SNGNRTLTLFNV 527
Query: 649 SRDDSGIYSCTATNVHGMDESKG-RLIVLHGPSYYEQLPPKITIAAHRNLQLRCSAHTEE 707
+R+D+ Y C N + S L VL+GP PP + + NL L C H+
Sbjct: 528 TRNDARAYVCGIQNSVSANRSDPVTLDVLYGPDTPIISPPDSSYLSGANLNLSC--HSAS 585
Query: 708 LLDVAYIWTHNGV 720
Y W NG+
Sbjct: 586 NPSPQYSWRINGI 598
Score = 68.6 bits (166), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 117/514 (22%), Positives = 197/514 (38%), Gaps = 86/514 (16%)
Query: 173 TYQYGMDIENPDKIPRGPYFI-------KQPTDVVFDLSKRSILNDITLSCYAGGYPNPS 225
T Y + +NP R I PT + S RS N + LSC+A P
Sbjct: 176 TASYKCETQNPVSARRSDSVILNVLYGPDAPTISPLNTSYRSGEN-LNLSCHAASNPPAQ 234
Query: 226 YEWFKEDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVEDRGSYHCKASNKFGSIIS 285
Y WF Q I ++ V + GSY C+A N +
Sbjct: 235 YSWFVNGTFQQSTQELFIPNIT------------------VNNSGSYTCQAHNSDTGLNR 276
Query: 286 ESVQLAFGFIGEFNLKRAPEIGNQNW-------GKAMFCDPPTNYPGVNYYWARDYFPNF 338
+V I + P I + N A+ C+P Y W +
Sbjct: 277 TTVTT----ITVYAEPPKPFITSNNSNPVEDEDAVALTCEPEIQ--NTTYLWWVNN--QS 328
Query: 339 VEEDKRVFVSYDG-ALYFSALEQIDAGNYSCNVQSKVSDTGRNGPFFPLKVFPHSNFQQL 397
+ R+ +S D L ++ + D G Y C +Q+++S + P L
Sbjct: 329 LPVSPRLQLSNDNRTLTLLSVTRNDVGPYECGIQNELS-VDHSDPVI---------LNVL 378
Query: 398 KFPNNFPKTFPEAP--KAGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYFENFNRILTI 455
P++ P P + G + L C A P Y+W G+ + + L I
Sbjct: 379 YGPDD-PTISPSYTYYRPGVNLSLSCHAASNPPAQYSWLIDGN-------IQQHTQELFI 430
Query: 456 PNVKVEDQGEYICRASNDRSALESSV--TISIQAE-PNFTIPLTD-KHMDNQADLTWTCE 511
N+ ++ G Y C+A+N S + TI++ AE P +I + K ++++ + +TCE
Sbjct: 431 SNITEKNSGLYTCQANNSASGHSRTTVKTITVSAELPKPSISSNNSKPVEDKDAVAFTCE 490
Query: 512 AFGVPDVTYSWFRNGELLN-SETLPLEDQDRYFIQDNVLTIRYLNPERDPAMYQCRAKNQ 570
+ TY W+ NG+ L S L L + +R NV D Y C +N
Sbjct: 491 P-EAQNTTYLWWVNGQSLPVSPRLQLSNGNRTLTLFNVT-------RNDARAYVCGIQNS 542
Query: 571 LKT-RYSSAQLRVLTLKPSFKKRPLESETYAGEGGNVTIFCNPEAAPKPKFVWKKDGNII 629
+ R L VL + P +S +G N+ + C+ + P P++ W+ +G I
Sbjct: 543 VSANRSDPVTLDVLYGPDTPIISPPDSSYLSG--ANLNLSCHSASNPSPQYSWRING--I 598
Query: 630 GSGGRRKIFENGNLLISPVSRDDSGIYSCTATNV 663
+ +F I+ ++ +++G Y+C +N+
Sbjct: 599 PQQHTQVLF------IAKITPNNNGTYACFVSNL 626
Score = 61.2 bits (147), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 89/354 (25%), Positives = 132/354 (37%), Gaps = 51/354 (14%)
Query: 430 SYNWTRRGSPLPRNAYFE--NFNRILTIPNVKVEDQGEYICRASNDRSALES-SVTISIQ 486
+Y W LP + + N NR LT+ NV D Y C N SA S SV +++
Sbjct: 141 TYLWWVNNQSLPVSPRLQLSNGNRTLTLFNVTRNDTASYKCETQNPVSARRSDSVILNVL 200
Query: 487 AEPNF-TIPLTDKHMDNQADLTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQ 545
P+ TI + + +L +C A P YSWF NG S FI
Sbjct: 201 YGPDAPTISPLNTSYRSGENLNLSCHAASNPPAQYSWFVNGTFQQST-------QELFIP 253
Query: 546 DNVLTIRYLNPERDPAMYQCRAKNQLKTRYSSAQLRVLTL-----KP---SFKKRPLESE 597
+ +T+ + Y C+A N T + + +T+ KP S P+E E
Sbjct: 254 N--ITV------NNSGSYTCQAHNS-DTGLNRTTVTTITVYAEPPKPFITSNNSNPVEDE 304
Query: 598 TYAGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYS 657
V + C PE W + ++ S + +N L + V+R+D G Y
Sbjct: 305 DA------VALTCEPEIQNTTYLWWVNNQSLPVSPRLQLSNDNRTLTLLSVTRNDVGPYE 358
Query: 658 CTATNVHGMDESKGRLI-VLHGPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWT 716
C N +D S ++ VL+GP P NL L C A + Y W
Sbjct: 359 CGIQNELSVDHSDPVILNVLYGPDDPTISPSYTYYRPGVNLSLSCHAASNP--PAQYSWL 416
Query: 717 HNGVRIGNMDLNELETPNINIDGGLLEITNASFADAGEYECVVKSTVGKISTKT 770
+G NI L I+N + ++G Y C ++ S T
Sbjct: 417 IDG--------------NIQQHTQELFISNITEKNSGLYTCQANNSASGHSRTT 456
Score = 29.6 bits (65), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 32/144 (22%), Positives = 61/144 (42%), Gaps = 28/144 (19%)
Query: 632 GGRRKIFENGNLLISPVSRDDSGIYSCTATNVHGM-DESKGRLIVLHGPSYYEQLPPKIT 690
GR I+ N +LLI + ++D+G Y+ + +E+ G+ V Y +L PK +
Sbjct: 62 SGREIIYPNASLLIQNIIQNDTGFYTLHVIKSDLVNEEATGQFRV------YPEL-PKPS 114
Query: 691 IAAHRN--------LQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGG-- 740
I+++ + + C T+ D Y+W N + +P + + G
Sbjct: 115 ISSNNSKPVEDKDAVAFTCEPETQ---DATYLWWVNNQSLP-------VSPRLQLSNGNR 164
Query: 741 LLEITNASFADAGEYECVVKSTVG 764
L + N + D Y+C ++ V
Sbjct: 165 TLTLFNVTRNDTASYKCETQNPVS 188
>pdb|1BIH|A Chain A, Crystal Structure Of The Insect Immune Protein Hemolin: A
New Domain Arrangement With Implications For Homophilic
Adhesion
pdb|1BIH|B Chain B, Crystal Structure Of The Insect Immune Protein Hemolin: A
New Domain Arrangement With Implications For Homophilic
Adhesion
Length = 395
Score = 85.5 bits (210), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 99/390 (25%), Positives = 160/390 (41%), Gaps = 58/390 (14%)
Query: 309 QNWGKAMFCDPPTNYPGVNYYWARDYFPNFVEEDKRVFVSYDGALYFSALEQIDAGNYSC 368
+N + C N GV Y W +D +E +G+L F + D G+Y C
Sbjct: 20 ENNPTVLECIIEGNDQGVKYSWKKDGKSYNWQEHNAALRKDEGSLVFLRPQASDEGHYQC 79
Query: 369 NVQSKVSDTGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPEAPKAGDKVRLECV-AFGYP 427
++ +V +F++ + KT + P G +L+CV YP
Sbjct: 80 FAETPAGVASS-------RVI---SFRKTYLIASPAKTHEKTPIEGRPFQLDCVLPNAYP 129
Query: 428 VPSYNWTRRGSPLPRNAYFENFNRILT-----------IPNVKVEDQGEYICRASNDRSA 476
P W +R S NA +F+R +T + V D +Y+C A N +A
Sbjct: 130 KPLITWKKRLSGADPNADVTDFDRRITAGPDGNLYFTIVTKEDVSDIYKYVCTAKN--AA 187
Query: 477 LESSVTI-------------SIQAEPNFTIP--LTDKHMDNQADLTWTCEAFGVPDVTY- 520
++ V + + EP +P ++ M D+T +G + Y
Sbjct: 188 VDEEVVLVEYEIKGVTKDNSGYKGEP---VPQYVSKDMMAKAGDVTMIYCMYGSNPMGYP 244
Query: 521 SWFRNGELLNSETLPLEDQDRYFIQDNVLTIRYL----NPERDPAMYQCRAKNQL-KTRY 575
++F+NG+ +N +DR + R L PE D +Y C N + K +
Sbjct: 245 NYFKNGKDVNGNP-----EDRITRHNRTSGKRLLFKTTLPE-DEGVYTCEVDNGVGKPQK 298
Query: 576 SSAQLRVLTLKPSFKKRPLESETYAGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRR 635
S +L V++ P ++++P E +G +VTI C P P VW + + SGGR
Sbjct: 299 HSLKLTVVSA-PKYEQKP-EKVIVVKQGQDVTIPCKVTGLPAPNVVWSHNAKPL-SGGRA 355
Query: 636 KIFENGNLLISPVSRDDSGIYSCTATNVHG 665
+ ++G L+I V D G Y C ATN HG
Sbjct: 356 TVTDSG-LVIKGVKNGDKGYYGCRATNEHG 384
Score = 37.4 bits (85), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 37/78 (47%), Gaps = 12/78 (15%)
Query: 211 DITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVEDRG 270
D+T+ C G P P+ W ++ PLS R T++ L+I + D+G
Sbjct: 326 DVTIPCKVTGLPAPNVVW-----------SHNAKPLSGGRATVTDSGLVIKGVKN-GDKG 373
Query: 271 SYHCKASNKFGSIISESV 288
Y C+A+N+ G E++
Sbjct: 374 YYGCRATNEHGDKYFETL 391
Score = 34.3 bits (77), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 80/352 (22%), Positives = 126/352 (35%), Gaps = 45/352 (12%)
Query: 430 SYNWTRRGSPLPRNAYFENFNRILTIPNVKVEDQGEYICRASNDRSALESSVT------- 482
SYNW + L ++ F R + D+G Y C A S V
Sbjct: 47 SYNWQEHNAALRKDEGSLVFLR------PQASDEGHYQCFAETPAGVASSRVISFRKTYL 100
Query: 483 ISIQAEPNFTIPLTDKHMDNQADLTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRY 542
I+ A+ + P+ + Q D A+ P +T+ +G N++ + +
Sbjct: 101 IASPAKTHEKTPIEGRPF--QLDCVLP-NAYPKPLITWKKRLSGADPNADVTDFDRRITA 157
Query: 543 FIQDNV-LTIRYLNPERDPAMYQCRAKNQL---KTRYSSAQLRVLTLKPS-FKKRPLE-- 595
N+ TI D Y C AKN + +++ +T S +K P+
Sbjct: 158 GPDGNLYFTIVTKEDVSDIYKYVCTAKNAAVDEEVVLVEYEIKGVTKDNSGYKGEPVPQY 217
Query: 596 -SETYAGEGGNVT-IFC----NPEAAPKPKFVWKKD--GNIIGSGGRRKIFENGNLLISP 647
S+ + G+VT I+C NP P F KD GN R LL
Sbjct: 218 VSKDMMAKAGDVTMIYCMYGSNPMGYPN-YFKNGKDVNGNPEDRITRHNRTSGKRLLFKT 276
Query: 648 VSRDDSGIYSCTATNVHGMDESKG-RLIVLHGPSYYEQLPPKITIAAH-RNLQLRCSAHT 705
+D G+Y+C N G + +L V+ P YEQ P K+ + +++ + C
Sbjct: 277 TLPEDEGVYTCEVDNGVGKPQKHSLKLTVVSAPK-YEQKPEKVIVVKQGQDVTIPCKVTG 335
Query: 706 EELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEITNASFADAGEYEC 757
+V +W+HN L + L I D G Y C
Sbjct: 336 LPAPNV--VWSHNA--------KPLSGGRATVTDSGLVIKGVKNGDKGYYGC 377
>pdb|2VRA|A Chain A, Drosophila Robo Ig1-2 (Monoclinic Form)
pdb|2VRA|B Chain B, Drosophila Robo Ig1-2 (Monoclinic Form)
pdb|2VRA|C Chain C, Drosophila Robo Ig1-2 (Monoclinic Form)
pdb|2VRA|D Chain D, Drosophila Robo Ig1-2 (Monoclinic Form)
Length = 208
Score = 77.4 bits (189), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 60/194 (30%), Positives = 90/194 (46%), Gaps = 19/194 (9%)
Query: 496 TDKHMDNQADLTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQDNVLTI-RYL 554
TD + T C+ G P+ T WF++GE +++ + R +D L R +
Sbjct: 17 TDLVVKKNEPATLNCKVEGKPEPTIEWFKDGEPVSTNE---KKSHRVQFKDGALFFYRTM 73
Query: 555 N--PERDPAMYQCRAKNQLKTRYSS-AQLRVLTLKPSFKKRPLESETYAGEGGNVTIFCN 611
E+D Y C AKN++ S A L++ L+ F+ P ++ GE + C
Sbjct: 74 QGKKEQDGGEYWCVAKNRVGQAVSRHASLQIAVLRDDFRVEPKDTRVAKGE--TALLECG 131
Query: 612 P-EAAPKPKFVWKKDGNII--------GSGGRRKIFENGNLLISPVSRDDSGIYSCTATN 662
P + P+P +W KDG + G+ R +I + GNLLIS V D G Y C A N
Sbjct: 132 PPKGIPEPTLIWIKDGVPLDDLKAMSFGASSRVRIVDGGNLLISNVEPIDEGNYKCIAQN 191
Query: 663 VHGMDESK-GRLIV 675
+ G ES +LIV
Sbjct: 192 LVGTRESSYAKLIV 205
Score = 63.5 bits (153), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 53/204 (25%), Positives = 78/204 (38%), Gaps = 33/204 (16%)
Query: 188 RGPYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLS 247
+ P I+ PTD+V ++ + LN C G P P+ EWFK+ +P+S
Sbjct: 8 QSPRIIEHPTDLVVKKNEPATLN-----CKVEGKPEPTIEWFKDG-----------EPVS 51
Query: 248 -----DKRFTLSGGNLII---NDPRQVEDRGSYHCKASNKFGSIISESVQLAFGFIGEFN 299
R G L ++ +D G Y C A N+ G +S L + + +
Sbjct: 52 TNEKKSHRVQFKDGALFFYRTMQGKKEQDGGEYWCVAKNRVGQAVSRHASLQIAVLRD-D 110
Query: 300 LKRAPEIGNQNWGKAMF--CDPPTNYPGVNYYWARDYFP------NFVEEDKRVFVSYDG 351
+ P+ G+ C PP P W +D P RV + G
Sbjct: 111 FRVEPKDTRVAKGETALLECGPPKGIPEPTLIWIKDGVPLDDLKAMSFGASSRVRIVDGG 170
Query: 352 ALYFSALEQIDAGNYSCNVQSKVS 375
L S +E ID GNY C Q+ V
Sbjct: 171 NLLISNVEPIDEGNYKCIAQNLVG 194
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 43/167 (25%), Positives = 70/167 (41%), Gaps = 9/167 (5%)
Query: 607 TIFCNPEAAPKPKFVWKKDGNIIGSGGR---RKIFENGNLL----ISPVSRDDSGIYSCT 659
T+ C E P+P W KDG + + + R F++G L + D G Y C
Sbjct: 28 TLNCKVEGKPEPTIEWFKDGEPVSTNEKKSHRVQFKDGALFFYRTMQGKKEQDGGEYWCV 87
Query: 660 ATNVHGMDESKGRLIVLHGPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNG 719
A N G S+ + + ++ PK T A L + + + IW +G
Sbjct: 88 AKNRVGQAVSRHASLQIAVLRDDFRVEPKDTRVAKGETALLECGPPKGIPEPTLIWIKDG 147
Query: 720 VRIGNMDLNEL-ETPNINI-DGGLLEITNASFADAGEYECVVKSTVG 764
V + ++ + + I DGG L I+N D G Y+C+ ++ VG
Sbjct: 148 VPLDDLKAMSFGASSRVRIVDGGNLLISNVEPIDEGNYKCIAQNLVG 194
Score = 44.3 bits (103), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 48/190 (25%), Positives = 78/190 (41%), Gaps = 18/190 (9%)
Query: 412 KAGDKVRLECVAFGYPVPSYNWTRRGSPLPRN------AYFEN----FNRILTIPNVKVE 461
K + L C G P P+ W + G P+ N F++ F R T+ K +
Sbjct: 22 KKNEPATLNCKVEGKPEPTIEWFKDGEPVSTNEKKSHRVQFKDGALFFYR--TMQGKKEQ 79
Query: 462 DQGEYICRASN---DRSALESSVTISIQAEPNFTIPLTDKHMDNQADLTWTCEAFGVPDV 518
D GEY C A N + +S+ I++ + P + + L G+P+
Sbjct: 80 DGGEYWCVAKNRVGQAVSRHASLQIAVLRDDFRVEPKDTRVAKGETALLECGPPKGIPEP 139
Query: 519 TYSWFRNGELLNS-ETLPLEDQDRYFIQDNV-LTIRYLNPERDPAMYQCRAKNQLKTRYS 576
T W ++G L+ + + R I D L I + P D Y+C A+N + TR S
Sbjct: 140 TLIWIKDGVPLDDLKAMSFGASSRVRIVDGGNLLISNVEP-IDEGNYKCIAQNLVGTRES 198
Query: 577 SAQLRVLTLK 586
S ++ +K
Sbjct: 199 SYAKLIVQVK 208
>pdb|2VR9|A Chain A, Drosophila Robo Ig1-2 (Tetragonal Form)
pdb|2VR9|B Chain B, Drosophila Robo Ig1-2 (Tetragonal Form)
pdb|2VR9|C Chain C, Drosophila Robo Ig1-2 (Tetragonal Form)
Length = 217
Score = 77.4 bits (189), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 60/194 (30%), Positives = 90/194 (46%), Gaps = 19/194 (9%)
Query: 496 TDKHMDNQADLTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQDNVLTI-RYL 554
TD + T C+ G P+ T WF++GE +++ + R +D L R +
Sbjct: 17 TDLVVKKNEPATLNCKVEGKPEPTIEWFKDGEPVSTNE---KKSHRVQFKDGALFFYRTM 73
Query: 555 N--PERDPAMYQCRAKNQLKTRYSS-AQLRVLTLKPSFKKRPLESETYAGEGGNVTIFCN 611
E+D Y C AKN++ S A L++ L+ F+ P ++ GE + C
Sbjct: 74 QGKKEQDGGEYWCVAKNRVGQAVSRHASLQIAVLRDDFRVEPKDTRVAKGE--TALLECG 131
Query: 612 P-EAAPKPKFVWKKDGNII--------GSGGRRKIFENGNLLISPVSRDDSGIYSCTATN 662
P + P+P +W KDG + G+ R +I + GNLLIS V D G Y C A N
Sbjct: 132 PPKGIPEPTLIWIKDGVPLDDLKAMSFGASSRVRIVDGGNLLISNVEPIDEGNYKCIAQN 191
Query: 663 VHGMDESK-GRLIV 675
+ G ES +LIV
Sbjct: 192 LVGTRESSYAKLIV 205
Score = 63.5 bits (153), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 53/204 (25%), Positives = 78/204 (38%), Gaps = 33/204 (16%)
Query: 188 RGPYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLS 247
+ P I+ PTD+V ++ + LN C G P P+ EWFK+ +P+S
Sbjct: 8 QSPRIIEHPTDLVVKKNEPATLN-----CKVEGKPEPTIEWFKDG-----------EPVS 51
Query: 248 -----DKRFTLSGGNLII---NDPRQVEDRGSYHCKASNKFGSIISESVQLAFGFIGEFN 299
R G L ++ +D G Y C A N+ G +S L + + +
Sbjct: 52 TNEKKSHRVQFKDGALFFYRTMQGKKEQDGGEYWCVAKNRVGQAVSRHASLQIAVLRD-D 110
Query: 300 LKRAPEIGNQNWGKAMF--CDPPTNYPGVNYYWARDYFP------NFVEEDKRVFVSYDG 351
+ P+ G+ C PP P W +D P RV + G
Sbjct: 111 FRVEPKDTRVAKGETALLECGPPKGIPEPTLIWIKDGVPLDDLKAMSFGASSRVRIVDGG 170
Query: 352 ALYFSALEQIDAGNYSCNVQSKVS 375
L S +E ID GNY C Q+ V
Sbjct: 171 NLLISNVEPIDEGNYKCIAQNLVG 194
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 43/167 (25%), Positives = 70/167 (41%), Gaps = 9/167 (5%)
Query: 607 TIFCNPEAAPKPKFVWKKDGNIIGSGGR---RKIFENGNLL----ISPVSRDDSGIYSCT 659
T+ C E P+P W KDG + + + R F++G L + D G Y C
Sbjct: 28 TLNCKVEGKPEPTIEWFKDGEPVSTNEKKSHRVQFKDGALFFYRTMQGKKEQDGGEYWCV 87
Query: 660 ATNVHGMDESKGRLIVLHGPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNG 719
A N G S+ + + ++ PK T A L + + + IW +G
Sbjct: 88 AKNRVGQAVSRHASLQIAVLRDDFRVEPKDTRVAKGETALLECGPPKGIPEPTLIWIKDG 147
Query: 720 VRIGNMDLNEL-ETPNINI-DGGLLEITNASFADAGEYECVVKSTVG 764
V + ++ + + I DGG L I+N D G Y+C+ ++ VG
Sbjct: 148 VPLDDLKAMSFGASSRVRIVDGGNLLISNVEPIDEGNYKCIAQNLVG 194
Score = 44.3 bits (103), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 48/190 (25%), Positives = 78/190 (41%), Gaps = 18/190 (9%)
Query: 412 KAGDKVRLECVAFGYPVPSYNWTRRGSPLPRN------AYFEN----FNRILTIPNVKVE 461
K + L C G P P+ W + G P+ N F++ F R T+ K +
Sbjct: 22 KKNEPATLNCKVEGKPEPTIEWFKDGEPVSTNEKKSHRVQFKDGALFFYR--TMQGKKEQ 79
Query: 462 DQGEYICRASN---DRSALESSVTISIQAEPNFTIPLTDKHMDNQADLTWTCEAFGVPDV 518
D GEY C A N + +S+ I++ + P + + L G+P+
Sbjct: 80 DGGEYWCVAKNRVGQAVSRHASLQIAVLRDDFRVEPKDTRVAKGETALLECGPPKGIPEP 139
Query: 519 TYSWFRNGELLNS-ETLPLEDQDRYFIQDNV-LTIRYLNPERDPAMYQCRAKNQLKTRYS 576
T W ++G L+ + + R I D L I + P D Y+C A+N + TR S
Sbjct: 140 TLIWIKDGVPLDDLKAMSFGASSRVRIVDGGNLLISNVEP-IDEGNYKCIAQNLVGTRES 198
Query: 577 SAQLRVLTLK 586
S ++ +K
Sbjct: 199 SYAKLIVQVK 208
>pdb|1CFB|A Chain A, Crystal Structure Of Tandem Type Iii Fibronectin Domains
From Drosophila Neuroglian At 2.0 Angstroms
Length = 205
Score = 77.0 bits (188), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 52/180 (28%), Positives = 84/180 (46%), Gaps = 14/180 (7%)
Query: 794 ATIQWTDGATNGRPITHYKIIARTNWN-STWFNVSEHVIGKEVDRYTGRKEASIENVLVP 852
A I W N PI HY I T++ ++W E V ++S + P
Sbjct: 21 AEIHWEQQGDNRSPILHYTIQFNTSFTPASWDAAYEKV---------PNTDSSFVVQMSP 71
Query: 853 WSTYEFKVIAGNELGYGEPSSPSPQYNTPADKPYQAPSRXXXXXXXXXDLSISWEPLPRE 912
W+ Y F+VIA N++G PS+ S T D P++ P +L ISW P+P
Sbjct: 72 WANYTFRVIAFNKIGASPPSAHSDSCTTQPDVPFKNPDNVVGQGTEPNNLVISWTPMPEI 131
Query: 913 KQNAPNIYYKIFWRKK-NDTEFQSETLKEYGNVGIAVVRIPSEFYYTEYEVKVQAINDVG 971
+ NAPN +Y + W++ +++ + ++ I + P+ + +Y +KV AIND G
Sbjct: 132 EHNAPNFHYYVSWKRDIPAAAWENNNIFDWRQNNIVIADQPT---FVKYLIKVVAINDRG 188
>pdb|2V9Q|A Chain A, First And Second Ig Domains From Human Robo1
pdb|2V9R|A Chain A, First And Second Ig Domains From Human Robo1 (Form 2)
Length = 212
Score = 75.5 bits (184), Expect = 1e-13, Method: Composition-based stats.
Identities = 52/181 (28%), Positives = 81/181 (44%), Gaps = 8/181 (4%)
Query: 507 TWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQDNVLTIRYLNPER---DPAMY 563
T C+A G P T W++ GE + ++ ++ +R ++ + D +Y
Sbjct: 28 TLNCKAEGRPTPTIEWYKGGERVETDKDDPRSHRMLLPSGSLFFLRIVHGRKSRPDEGVY 87
Query: 564 QCRAKNQLKTRYS-SAQLRVLTLKPSFKKRPLESETYAGEGGNVTIFCNP-EAAPKPKFV 621
C A+N L S A L V L+ F++ P S+ G + C P P+P
Sbjct: 88 VCVARNYLGEAVSHDASLEVAILRDDFRQNP--SDVMVAVGEPAVMECQPPRGHPEPTIS 145
Query: 622 WKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTATNVHGMDESK-GRLIVLHGPS 680
WKKDG+ + R G L+I+ + D+G Y C TN+ G ES+ L VL PS
Sbjct: 146 WKKDGSPLDDKDERITIRGGKLMITYTRKSDAGKYVCVGTNMVGERESEVAELTVLERPS 205
Query: 681 Y 681
+
Sbjct: 206 F 206
Score = 63.5 bits (153), Expect = 6e-10, Method: Composition-based stats.
Identities = 50/185 (27%), Positives = 83/185 (44%), Gaps = 18/185 (9%)
Query: 190 PYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDK 249
P ++ P+D++ + + TL+C A G P P+ EW+K +R+ + DP S
Sbjct: 10 PRIVEHPSDLIVSKGEPA-----TLNCKAEGRPTPTIEWYKGG---ERVETDKDDPRS-H 60
Query: 250 RFTLSGGNL----IINDPRQVEDRGSYHCKASNKFGSIISESVQLAFGFIGEFNLKRAPE 305
R L G+L I++ + D G Y C A N G +S L + + + ++ P
Sbjct: 61 RMLLPSGSLFFLRIVHGRKSRPDEGVYVCVARNYLGEAVSHDASLEVAILRD-DFRQNPS 119
Query: 306 IGNQNWGK--AMFCDPPTNYPGVNYYWARDYFPNFVEEDKRVFVSYDGALYFSALEQIDA 363
G+ M C PP +P W +D P ++D+R+ + G L + + DA
Sbjct: 120 DVMVAVGEPAVMECQPPRGHPEPTISWKKDGSP-LDDKDERITIR-GGKLMITYTRKSDA 177
Query: 364 GNYSC 368
G Y C
Sbjct: 178 GKYVC 182
Score = 51.2 bits (121), Expect = 3e-06, Method: Composition-based stats.
Identities = 53/202 (26%), Positives = 76/202 (37%), Gaps = 26/202 (12%)
Query: 578 AQLRVLTLKPSFKKRPLESETYAGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSG----- 632
LR P + P S+ +G T+ C E P P W K G + +
Sbjct: 1 GSLRQEDFPPRIVEHP--SDLIVSKGEPATLNCKAEGRPTPTIEWYKGGERVETDKDDPR 58
Query: 633 GRRKIFENGNLLISPV-----SRDDSGIYSCTATNVHGMDESK-GRLIVLHGPSYYEQLP 686
R + +G+L + SR D G+Y C A N G S L V + Q P
Sbjct: 59 SHRMLLPSGSLFFLRIVHGRKSRPDEGVYVCVARNYLGEAVSHDASLEVAILRDDFRQNP 118
Query: 687 PKITIAAHRNLQLRCS---AHTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLE 743
+ +A + C H E + W +G + + D I I GG L
Sbjct: 119 SDVMVAVGEPAVMECQPPRGHPEPTIS----WKKDGSPLDDKD------ERITIRGGKLM 168
Query: 744 ITNASFADAGEYECVVKSTVGK 765
IT +DAG+Y CV + VG+
Sbjct: 169 ITYTRKSDAGKYVCVGTNMVGE 190
Score = 45.4 bits (106), Expect = 2e-04, Method: Composition-based stats.
Identities = 61/223 (27%), Positives = 90/223 (40%), Gaps = 54/223 (24%)
Query: 402 NFPKTFPEAPK-----AGDKVRLECVAFGYPVPSYNWTRRGSP--------------LPR 442
+FP E P G+ L C A G P P+ W + G LP
Sbjct: 7 DFPPRIVEHPSDLIVSKGEPATLNCKAEGRPTPTIEWYKGGERVETDKDDPRSHRMLLPS 66
Query: 443 NAYFENFNRILTIPNVKVEDQGEYICRASN---DRSALESSVTISIQAEPNFTIPLTDKH 499
+ F F RI+ + D+G Y+C A N + + ++S+ ++I L D
Sbjct: 67 GSLF--FLRIVHGRKSR-PDEGVYVCVARNYLGEAVSHDASLEVAI---------LRDDF 114
Query: 500 MDNQADL--------TWTCE-AFGVPDVTYSWFRNGELLNSETLPLEDQD-RYFIQDNVL 549
N +D+ C+ G P+ T SW ++G PL+D+D R I+ L
Sbjct: 115 RQNPSDVMVAVGEPAVMECQPPRGHPEPTISWKKDGS-------PLDDKDERITIRGGKL 167
Query: 550 TIRYLNPERDPAMYQCRAKNQLKTRYSS-AQLRVLTLKPSFKK 591
I Y + D Y C N + R S A+L VL +PSF K
Sbjct: 168 MITYTR-KSDAGKYVCVGTNMVGERESEVAELTVLE-RPSFVK 208
>pdb|2RJM|A Chain A, 3ig Structure Of Titin Domains I67-I69 E-To-A Mutated
Variant
Length = 284
Score = 70.9 bits (172), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 60/215 (27%), Positives = 92/215 (42%), Gaps = 13/215 (6%)
Query: 453 LTIPNVKVEDQGEYICRASNDRSALESSVTISIQAEPNFTIPLTDKHMDNQADLT-WTCE 511
LT+ V D G+Y C ASN S + +QA P F L + Q + T + C+
Sbjct: 63 LTVLKVTKGDAGQYTCYASNVAGKDSCSAQLGVQAPPRFIKKLEPSRIVKQDEHTRYECK 122
Query: 512 AFGVPDVTYSWFRN-GELLNSETLPLEDQDRYFIQDNVLTIRYLNPERDPAMYQCRAKNQ 570
G P++ W+++ E+ S + F++ + Y D Y C A N
Sbjct: 123 IGGSPEIKVLWYKDETEIQESSKFRMS-----FVESVAVLEMYNLSVEDSGDYTCEAHNA 177
Query: 571 LKTRYSSAQLRVLTLKPSFKKRPLESETYAGEGGNVTIFCNPEAAPKPKFVWKKDGNIIG 630
+ SS L+V P F+K+P ET +G +V + C + P + W KD +
Sbjct: 178 AGSASSSTSLKVKE-PPVFRKKPHPVETL--KGADVHLECELQGTPPFQVSWHKDKRELR 234
Query: 631 SGGRRKIFENG---NLLISPVSRDDSGIYSCTATN 662
SG + KI ++ I V D G Y C A+N
Sbjct: 235 SGKKYKIMSENFLTSIHILNVDSADIGEYQCKASN 269
Score = 58.5 bits (140), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 46/177 (25%), Positives = 76/177 (42%), Gaps = 16/177 (9%)
Query: 587 PSFKKRPLESETYAGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRK--IFEN-GNL 643
P F +P+ + GE G T C+ K W KD I GG K + EN L
Sbjct: 6 PFFDLKPVSVDLALGESG--TFKCHVTGTAPIKITWAKDNREIRPGGNYKMTLVENTATL 63
Query: 644 LISPVSRDDSGIYSCTATNVHGMDESKGRLIVLHGPSYYEQLPPKITIAAHRNLQLRCSA 703
+ V++ D+G Y+C A+NV G D +L V P + ++L P + + + C
Sbjct: 64 TVLKVTKGDAGQYTCYASNVAGKDSCSAQLGVQAPPRFIKKLEPSRIVKQDEHTRYECKI 123
Query: 704 HTEELLDVAYIWTHNGVRI---GNMDLNELETPNINIDGGLLEITNASFADAGEYEC 757
++ +W + I ++ +E+ + LE+ N S D+G+Y C
Sbjct: 124 GGSP--EIKVLWYKDETEIQESSKFRMSFVESVAV------LEMYNLSVEDSGDYTC 172
Score = 55.1 bits (131), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 61/242 (25%), Positives = 92/242 (38%), Gaps = 36/242 (14%)
Query: 343 KRVFVSYDGALYFSALEQIDAGNYSC---NVQSKVSDTGRNG----PFFPLKVFPHSNFQ 395
K V L + + DAG Y+C NV K S + + G P F K+ P +
Sbjct: 53 KMTLVENTATLTVLKVTKGDAGQYTCYASNVAGKDSCSAQLGVQAPPRFIKKLEPSRIVK 112
Query: 396 QLKFPNNFPKTFPEAPKAGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYFE----NFNR 451
Q + R EC G P W + + + ++ F
Sbjct: 113 Q-----------------DEHTRYECKIGGSPEIKVLWYKDETEIQESSKFRMSFVESVA 155
Query: 452 ILTIPNVKVEDQGEYICRASNDRSALESSVTISIQAEPNFTIPLTDKHMDNQADLTWTCE 511
+L + N+ VED G+Y C A N + SS ++ ++ P F AD+ CE
Sbjct: 156 VLEMYNLSVEDSGDYTCEAHNAAGSASSSTSLKVKEPPVFRKKPHPVETLKGADVHLECE 215
Query: 512 AFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQDNVLT-IRYLNPER-DPAMYQCRAKN 569
G P SW ++ L S + + +N LT I LN + D YQC+A N
Sbjct: 216 LQGTPPFQVSWHKDKRELRS------GKKYKIMSENFLTSIHILNVDSADIGEYQCKASN 269
Query: 570 QL 571
+
Sbjct: 270 DV 271
Score = 52.4 bits (124), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 69/266 (25%), Positives = 104/266 (39%), Gaps = 25/266 (9%)
Query: 507 TWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQDNVLTIRYLNPER-DPAMYQC 565
T+ C G + +W ++ N E P + ++ N T+ L + D Y C
Sbjct: 24 TFKCHVTGTAPIKITWAKD----NREIRPGGNYKMTLVE-NTATLTVLKVTKGDAGQYTC 78
Query: 566 RAKNQLKTRYSSAQLRVLTLKPSFKKRPLESETYAGEGGNVTIFCNPEAAPKPKFVWKKD 625
A N SAQL V P F K+ LE + + C +P+ K +W KD
Sbjct: 79 YASNVAGKDSCSAQLGV-QAPPRFIKK-LEPSRIVKQDEHTRYECKIGGSPEIKVLWYKD 136
Query: 626 GNII--GSGGRRKIFENGNLL-ISPVSRDDSGIYSCTATNVHGMDESKGRLIVLHGPSYY 682
I S R E+ +L + +S +DSG Y+C A N G S L V P +
Sbjct: 137 ETEIQESSKFRMSFVESVAVLEMYNLSVEDSGDYTCEAHNAAGSASSSTSLKVKEPPVFR 196
Query: 683 EQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGN----MDLNELETPNINID 738
++ P T+ ++ L C V++ +R G M N L +
Sbjct: 197 KKPHPVETLKG-ADVHLECELQGTPPFQVSWHKDKRELRSGKKYKIMSENFLTS------ 249
Query: 739 GGLLEITNASFADAGEYECVVKSTVG 764
+ I N AD GEY+C + VG
Sbjct: 250 ---IHILNVDSADIGEYQCKASNDVG 272
Score = 49.7 bits (117), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 76/307 (24%), Positives = 111/307 (36%), Gaps = 37/307 (12%)
Query: 190 PYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDK 249
P+F +P V L + T C+ G W K++ I P +
Sbjct: 6 PFFDLKPVSVDLALGESG-----TFKCHVTGTAPIKITWAKDN--------REIRPGGNY 52
Query: 250 RFTLSGGNLIINDPRQVE-DRGSYHCKASNKFGSIISESVQLAFGFIGEFNLKRAP-EIG 307
+ TL + + + D G Y C ASN G S S QL F K P I
Sbjct: 53 KMTLVENTATLTVLKVTKGDAGQYTCYASNVAGKD-SCSAQLGVQAPPRFIKKLEPSRIV 111
Query: 308 NQNWGKAMFCDPPTNYPGVNYYWARDYFPNFVEEDKRV---FVSYDGALYFSALEQIDAG 364
Q+ C + P + W +D ++E + FV L L D+G
Sbjct: 112 KQDEHTRYECKIGGS-PEIKVLWYKD--ETEIQESSKFRMSFVESVAVLEMYNLSVEDSG 168
Query: 365 NYSCNVQSKVSDTGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPEAPKAGDKVRLECVAF 424
+Y+C + + LKV F++ K P G V LEC
Sbjct: 169 DYTCEAHNAAGSASSS---TSLKVKEPPVFRK--------KPHPVETLKGADVHLECELQ 217
Query: 425 GYPVPSYNWTRRGSPLPRNAYF----ENFNRILTIPNVKVEDQGEYICRASNDRSALESS 480
G P +W + L + ENF + I NV D GEY C+ASND +
Sbjct: 218 GTPPFQVSWHKDKRELRSGKKYKIMSENFLTSIHILNVDSADIGEYQCKASNDVGSYTCV 277
Query: 481 VTISIQA 487
+I+++A
Sbjct: 278 GSITLKA 284
>pdb|2XY1|A Chain A, Crystal Structure Of Ncam2 Ig3-4
Length = 192
Score = 69.3 bits (168), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 56/174 (32%), Positives = 87/174 (50%), Gaps = 26/174 (14%)
Query: 505 DLTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQ--DNVLTIR-YLNPERDPA 561
++T++C A G P+ SWFRNG+L +E+ ++Y ++ + LT+R +N + P
Sbjct: 21 EMTFSCRASGSPEPAISWFRNGKL-------IEENEKYILKGSNTELTVRNIINSDGGP- 72
Query: 562 MYQCRAKNQLKTRYSSAQLRVLTLKPSFKKRPLESETYAGEGGNVTIFCNPEAAPKPKFV 621
Y CRA N+ A L+V ++P + E+ TY E G VT+ C+ E P P+
Sbjct: 73 -YVCRATNKAGEDEKQAFLQVF-VQPHIIQLKNET-TY--ENGQVTLVCDAEGEPIPEIT 127
Query: 622 WKK--DGNIIGSG-----GRRKI---FENGNLLISPVSRDDSGIYSCTATNVHG 665
WK+ DG G GR ++ + +L I V DSG Y C A + G
Sbjct: 128 WKRAVDGFTFTEGDKSLDGRIEVKGQHGSSSLHIKDVKLSDSGRYDCEAASRIG 181
Score = 58.5 bits (140), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 34/122 (27%), Positives = 57/122 (46%), Gaps = 3/122 (2%)
Query: 405 KTFPEAPKAGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYF--ENFNRILTIPNVKVED 462
K+F + G+++ C A G P P+ +W R G + N + + N LT+ N+ D
Sbjct: 10 KSFNATAERGEEMTFSCRASGSPEPAISWFRNGKLIEENEKYILKGSNTELTVRNIINSD 69
Query: 463 QGEYICRASNDRSALESSVTISIQAEPNFTIPLTDKHMDNQADLTWTCEAFGVPDVTYSW 522
G Y+CRA+N E + + +P+ I L ++ +T C+A G P +W
Sbjct: 70 GGPYVCRATNKAGEDEKQAFLQVFVQPHI-IQLKNETTYENGQVTLVCDAEGEPIPEITW 128
Query: 523 FR 524
R
Sbjct: 129 KR 130
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 43/169 (25%), Positives = 70/169 (41%), Gaps = 7/169 (4%)
Query: 600 AGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGN--LLISPVSRDDSGIYS 657
A G +T C +P+P W ++G +I + I + N L + + D G Y
Sbjct: 16 AERGEEMTFSCRASGSPEPAISWFRNGKLIEEN-EKYILKGSNTELTVRNIINSDGGPYV 74
Query: 658 CTATNVHGMDESKGRLIVLHGPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTH 717
C ATN G DE + L V P + QL + T + + L C A E + ++ +
Sbjct: 75 CRATNKAGEDEKQAFLQVFVQP-HIIQLKNETTY-ENGQVTLVCDAEGEPIPEITWKRAV 132
Query: 718 NGVRI--GNMDLNELETPNINIDGGLLEITNASFADAGEYECVVKSTVG 764
+G G+ L+ L I + +D+G Y+C S +G
Sbjct: 133 DGFTFTEGDKSLDGRIEVKGQHGSSSLHIKDVKLSDSGRYDCEAASRIG 181
Score = 47.0 bits (110), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 50/184 (27%), Positives = 76/184 (41%), Gaps = 44/184 (23%)
Query: 211 DITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGNL------IINDPR 264
++T SC A G P P+ WF+ LI+ ++++ L G N IIN
Sbjct: 21 EMTFSCRASGSPEPAISWFRN--------GKLIE--ENEKYILKGSNTELTVRNIINS-- 68
Query: 265 QVEDRGSYHCKASNKFGSIISESVQLAF--GFIGEFNLKRAPEIGNQNWGKAMFCDPPTN 322
D G Y C+A+NK G E + AF F+ ++ E +N + CD
Sbjct: 69 ---DGGPYVCRATNKAG----EDEKQAFLQVFVQPHIIQLKNETTYENGQVTLVCDAEGE 121
Query: 323 -YPGVNYYWARDYFPNFVEEDKRVFVSYDG-----------ALYFSALEQIDAGNYSCNV 370
P + + A D F F E DK S DG +L+ ++ D+G Y C
Sbjct: 122 PIPEITWKRAVDGF-TFTEGDK----SLDGRIEVKGQHGSSSLHIKDVKLSDSGRYDCEA 176
Query: 371 QSKV 374
S++
Sbjct: 177 ASRI 180
Score = 35.4 bits (80), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 37/158 (23%), Positives = 59/158 (37%), Gaps = 23/158 (14%)
Query: 340 EEDKRVFVSYDGALYFSALEQIDAGNYSCNVQSKVSDTGRNGPFFPLKVFPHSNFQQLKF 399
E +K + + L + D G Y C +K + + F + V PH QLK
Sbjct: 47 ENEKYILKGSNTELTVRNIINSDGGPYVCRATNKAGEDEKQA-FLQVFVQPH--IIQLKN 103
Query: 400 PNNFPKTFPEAPKAGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYFENFN-RI------ 452
+ +V L C A G P+P W R ++ + RI
Sbjct: 104 ETTYEN---------GQVTLVCDAEGEPIPEITWKRAVDGFTFTEGDKSLDGRIEVKGQH 154
Query: 453 ----LTIPNVKVEDQGEYICRASNDRSALESSVTISIQ 486
L I +VK+ D G Y C A++ + S+ + I+
Sbjct: 155 GSSSLHIKDVKLSDSGRYDCEAASRIGGHQKSMYLDIE 192
>pdb|2YD5|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human
Receptor Protein Tyrosine Phosphatase Lar
pdb|2YD8|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human
Receptor Protein Tyrosine Phosphatase Lar In Complex
With Sucrose Octasulphate
Length = 214
Score = 69.3 bits (168), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 51/166 (30%), Positives = 75/166 (45%), Gaps = 9/166 (5%)
Query: 507 TWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQDNVLTIRYLNPERDPAMYQCR 566
++ C+A G P +W + G+ ++S+ + + D +VL I+ L +RD A+Y+C
Sbjct: 25 SFVCQATGEPKPRITWMKKGKKVSSQRFEVIEFDDG--AGSVLRIQPLRVQRDEAIYECT 82
Query: 567 AKNQLKTRYSSAQLRVL---TLKPSFKKRPLESETYAGEGG-NVTIFCNPEAAPKPKFVW 622
A N L +SA+L VL L P F + + E T+ C P P+ W
Sbjct: 83 ATNSLGEINTSAKLSVLEEEQLPPGFPSIDMGPQLKVVEKARTATMLCAAGGNPDPEISW 142
Query: 623 KKD---GNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTATNVHG 665
KD + S GR K +G L I D G Y C ATN G
Sbjct: 143 FKDFLPVDPATSNGRIKQLRSGALQIESSEESDQGKYECVATNSAG 188
Score = 59.7 bits (143), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 59/197 (29%), Positives = 87/197 (44%), Gaps = 32/197 (16%)
Query: 586 KPSFKKRPLESETYAGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKI-FENGN-- 642
KP F K P + +G G + C PKP+ W K G + S I F++G
Sbjct: 6 KPVFIKVPEDQTGLSG--GVASFVCQATGEPKPRITWMKKGKKVSSQRFEVIEFDDGAGS 63
Query: 643 -LLISP--VSRDDSGIYSCTATNVHGMDESKGRLIVLHGPSYYEQLPPKI-TIAAHRNLQ 698
L I P V RD++ IY CTATN G + +L VL EQLPP +I L+
Sbjct: 64 VLRIQPLRVQRDEA-IYECTATNSLGEINTSAKLSVLE----EEQLPPGFPSIDMGPQLK 118
Query: 699 LRCSAHTEELL-------DVAYIWTHNGVRI----GNMDLNELETPNINIDGGLLEITNA 747
+ A T +L D W + + + N + +L + G L+I ++
Sbjct: 119 VVEKARTATMLCAAGGNPDPEISWFKDFLPVDPATSNGRIKQLRS-------GALQIESS 171
Query: 748 SFADAGEYECVVKSTVG 764
+D G+YECV ++ G
Sbjct: 172 EESDQGKYECVATNSAG 188
Score = 50.4 bits (119), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 44/179 (24%), Positives = 73/179 (40%), Gaps = 19/179 (10%)
Query: 413 AGDKVRLECVAFGYPVPSYNWTRRGSPLPRN-----AYFENFNRILTIPNVKVE-DQGEY 466
+G C A G P P W ++G + + + +L I ++V+ D+ Y
Sbjct: 20 SGGVASFVCQATGEPKPRITWMKKGKKVSSQRFEVIEFDDGAGSVLRIQPLRVQRDEAIY 79
Query: 467 ICRASNDRSALESSVTISIQAE-------PNFTIPLTDKHMDNQADLTWTCEAFGVPDVT 519
C A+N + +S +S+ E P+ + K ++ T C A G PD
Sbjct: 80 ECTATNSLGEINTSAKLSVLEEEQLPPGFPSIDMGPQLKVVEKARTATMLCAAGGNPDPE 139
Query: 520 YSWFRNGELLNSETLPLEDQDRYF-IQDNVLTIRYLNPERDPAMYQCRAKNQLKTRYSS 577
SWF++ ++ P R ++ L I + E D Y+C A N TRYS+
Sbjct: 140 ISWFKDFLPVD----PATSNGRIKQLRSGALQIES-SEESDQGKYECVATNSAGTRYSA 193
Score = 47.4 bits (111), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 50/193 (25%), Positives = 70/193 (36%), Gaps = 32/193 (16%)
Query: 190 PYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDK 249
P FIK P D LS + C A G P P W K+ +S +
Sbjct: 7 PVFIKVPEDQT-GLSG----GVASFVCQATGEPKPRITWMKKG-----------KKVSSQ 50
Query: 250 RFTL------SGGNLIINDPRQVEDRGSYHCKASNKFGSI-------ISESVQLAFGFIG 296
RF + +G L I R D Y C A+N G I + E QL GF
Sbjct: 51 RFEVIEFDDGAGSVLRIQPLRVQRDEAIYECTATNSLGEINTSAKLSVLEEEQLPPGFP- 109
Query: 297 EFNLKRAPEIGNQNWGKAMFCDPPTNYPGVNYYWARDYFP-NFVEEDKRVFVSYDGALYF 355
++ ++ + M C N P W +D+ P + + R+ GAL
Sbjct: 110 SIDMGPQLKVVEKARTATMLCAAGGN-PDPEISWFKDFLPVDPATSNGRIKQLRSGALQI 168
Query: 356 SALEQIDAGNYSC 368
+ E+ D G Y C
Sbjct: 169 ESSEESDQGKYEC 181
Score = 38.5 bits (88), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 38/80 (47%), Gaps = 11/80 (13%)
Query: 213 TLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDP-LSDKRFT-LSGGNLIINDPRQVEDRG 270
T+ C AGG P+P WFK D++ +DP S+ R L G L I + D+G
Sbjct: 127 TMLCAAGGNPDPEISWFK-DFLP-------VDPATSNGRIKQLRSGALQIESSEE-SDQG 177
Query: 271 SYHCKASNKFGSIISESVQL 290
Y C A+N G+ S L
Sbjct: 178 KYECVATNSAGTRYSAPANL 197
>pdb|3PXH|A Chain A, Tandem Ig Domains Of Tyrosine Phosphatase Lar
Length = 201
Score = 68.9 bits (167), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 51/166 (30%), Positives = 75/166 (45%), Gaps = 9/166 (5%)
Query: 507 TWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQDNVLTIRYLNPERDPAMYQCR 566
++ C+A G P +W + G+ ++S+ + + D +VL I+ L +RD A+Y+C
Sbjct: 26 SFVCQATGEPKPRITWMKKGKKVSSQRFEVIEFDDG--AGSVLRIQPLRVQRDEAIYECT 83
Query: 567 AKNQLKTRYSSAQLRVL---TLKPSFKKRPLESETYAGEGG-NVTIFCNPEAAPKPKFVW 622
A N L +SA+L VL L F + + E G T+ C P P+ W
Sbjct: 84 ATNSLGEINTSAKLSVLEEDQLPSGFPTIDMGPQLKVVEKGRTATMLCAAGGNPDPEISW 143
Query: 623 KKD---GNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTATNVHG 665
KD + S GR K +G L I D G Y C ATN G
Sbjct: 144 FKDFLPVDPAASNGRIKQLRSGALQIESSEESDQGKYECVATNSAG 189
Score = 55.1 bits (131), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 56/197 (28%), Positives = 85/197 (43%), Gaps = 32/197 (16%)
Query: 586 KPSFKKRPLESETYAGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKI-FENGN-- 642
KP F K P + +G G + C PKP+ W K G + S I F++G
Sbjct: 7 KPVFVKVPEDQTGLSG--GVASFVCQATGEPKPRITWMKKGKKVSSQRFEVIEFDDGAGS 64
Query: 643 -LLISP--VSRDDSGIYSCTATNVHGMDESKGRLIVLHGPSYYEQLP---PKITIAAH-- 694
L I P V RD++ IY CTATN G + +L VL +QLP P I +
Sbjct: 65 VLRIQPLRVQRDEA-IYECTATNSLGEINTSAKLSVLE----EDQLPSGFPTIDMGPQLK 119
Query: 695 -----RNLQLRCSAHTEELLDVAYIWTHNGV--RIGNMDLNELETPNINIDGGLLEITNA 747
R + C+A ++++ V N + +L + G L+I ++
Sbjct: 120 VVEKGRTATMLCAAGGNPDPEISWFKDFLPVDPAASNGRIKQLRS-------GALQIESS 172
Query: 748 SFADAGEYECVVKSTVG 764
+D G+YECV ++ G
Sbjct: 173 EESDQGKYECVATNSAG 189
Score = 50.4 bits (119), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 44/179 (24%), Positives = 72/179 (40%), Gaps = 19/179 (10%)
Query: 413 AGDKVRLECVAFGYPVPSYNWTRRGSPLPRN-----AYFENFNRILTIPNVKVE-DQGEY 466
+G C A G P P W ++G + + + +L I ++V+ D+ Y
Sbjct: 21 SGGVASFVCQATGEPKPRITWMKKGKKVSSQRFEVIEFDDGAGSVLRIQPLRVQRDEAIY 80
Query: 467 ICRASNDRSALESSVTISIQAE-------PNFTIPLTDKHMDNQADLTWTCEAFGVPDVT 519
C A+N + +S +S+ E P + K ++ T C A G PD
Sbjct: 81 ECTATNSLGEINTSAKLSVLEEDQLPSGFPTIDMGPQLKVVEKGRTATMLCAAGGNPDPE 140
Query: 520 YSWFRNGELLNSETLPLEDQDRYF-IQDNVLTIRYLNPERDPAMYQCRAKNQLKTRYSS 577
SWF++ ++ P R ++ L I + E D Y+C A N TRYS+
Sbjct: 141 ISWFKDFLPVD----PAASNGRIKQLRSGALQIES-SEESDQGKYECVATNSAGTRYSA 194
Score = 47.8 bits (112), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 51/195 (26%), Positives = 71/195 (36%), Gaps = 36/195 (18%)
Query: 190 PYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDK 249
P F+K P D LS + C A G P P W K+ +S +
Sbjct: 8 PVFVKVPEDQT-GLSG----GVASFVCQATGEPKPRITWMKKG-----------KKVSSQ 51
Query: 250 RFTL------SGGNLIINDPRQVEDRGSYHCKASNKFGSI-------ISESVQLAFGFIG 296
RF + +G L I R D Y C A+N G I + E QL GF
Sbjct: 52 RFEVIEFDDGAGSVLRIQPLRVQRDEAIYECTATNSLGEINTSAKLSVLEEDQLPSGFP- 110
Query: 297 EFNLKRAPEIGNQNWGK--AMFCDPPTNYPGVNYYWARDYFP-NFVEEDKRVFVSYDGAL 353
+ P++ G+ M C N P W +D+ P + + R+ GAL
Sbjct: 111 --TIDMGPQLKVVEKGRTATMLCAAGGN-PDPEISWFKDFLPVDPAASNGRIKQLRSGAL 167
Query: 354 YFSALEQIDAGNYSC 368
+ E+ D G Y C
Sbjct: 168 QIESSEESDQGKYEC 182
Score = 38.1 bits (87), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 38/80 (47%), Gaps = 11/80 (13%)
Query: 213 TLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDP-LSDKRFT-LSGGNLIINDPRQVEDRG 270
T+ C AGG P+P WFK D++ +DP S+ R L G L I + D+G
Sbjct: 128 TMLCAAGGNPDPEISWFK-DFLP-------VDPAASNGRIKQLRSGALQIESSEE-SDQG 178
Query: 271 SYHCKASNKFGSIISESVQL 290
Y C A+N G+ S L
Sbjct: 179 KYECVATNSAGTRYSAPANL 198
>pdb|2RIK|A Chain A, I-Band Fragment I67-I69 From Titin
Length = 284
Score = 68.9 bits (167), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 59/215 (27%), Positives = 91/215 (42%), Gaps = 13/215 (6%)
Query: 453 LTIPNVKVEDQGEYICRASNDRSALESSVTISIQAEPNFTIPLTDKHMDNQADLT-WTCE 511
LT+ V D G+Y C ASN S + +Q P F L + Q + T + C+
Sbjct: 63 LTVLKVTKGDAGQYTCYASNVAGKDSCSAQLGVQEPPRFIKKLEPSRIVKQDEHTRYECK 122
Query: 512 AFGVPDVTYSWFRN-GELLNSETLPLEDQDRYFIQDNVLTIRYLNPERDPAMYQCRAKNQ 570
G P++ W+++ E+ S + F++ + Y D Y C A N
Sbjct: 123 IGGSPEIKVLWYKDETEIQESSKFRMS-----FVESVAVLEMYNLSVEDSGDYTCEAHNA 177
Query: 571 LKTRYSSAQLRVLTLKPSFKKRPLESETYAGEGGNVTIFCNPEAAPKPKFVWKKDGNIIG 630
+ SS L+V P F+K+P ET +G +V + C + P + W KD +
Sbjct: 178 AGSASSSTSLKVKE-PPVFRKKPHPVETL--KGADVHLECELQGTPPFQVSWHKDKRELR 234
Query: 631 SGGRRKIFENG---NLLISPVSRDDSGIYSCTATN 662
SG + KI ++ I V D G Y C A+N
Sbjct: 235 SGKKYKIMSENFLTSIHILNVDSADIGEYQCKASN 269
Score = 59.3 bits (142), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 46/177 (25%), Positives = 76/177 (42%), Gaps = 16/177 (9%)
Query: 587 PSFKKRPLESETYAGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRK--IFEN-GNL 643
P F +P+ + GE G T C+ K W KD I GG K + EN L
Sbjct: 6 PFFDLKPVSVDLALGESG--TFKCHVTGTAPIKITWAKDNREIRPGGNYKMTLVENTATL 63
Query: 644 LISPVSRDDSGIYSCTATNVHGMDESKGRLIVLHGPSYYEQLPPKITIAAHRNLQLRCSA 703
+ V++ D+G Y+C A+NV G D +L V P + ++L P + + + C
Sbjct: 64 TVLKVTKGDAGQYTCYASNVAGKDSCSAQLGVQEPPRFIKKLEPSRIVKQDEHTRYECKI 123
Query: 704 HTEELLDVAYIWTHNGVRI---GNMDLNELETPNINIDGGLLEITNASFADAGEYEC 757
++ +W + I ++ +E+ + LE+ N S D+G+Y C
Sbjct: 124 GGSP--EIKVLWYKDETEIQESSKFRMSFVESVAV------LEMYNLSVEDSGDYTC 172
Score = 55.5 bits (132), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 61/242 (25%), Positives = 92/242 (38%), Gaps = 36/242 (14%)
Query: 343 KRVFVSYDGALYFSALEQIDAGNYSC---NVQSKVSDTGRNG----PFFPLKVFPHSNFQ 395
K V L + + DAG Y+C NV K S + + G P F K+ P +
Sbjct: 53 KMTLVENTATLTVLKVTKGDAGQYTCYASNVAGKDSCSAQLGVQEPPRFIKKLEPSRIVK 112
Query: 396 QLKFPNNFPKTFPEAPKAGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYFE----NFNR 451
Q + R EC G P W + + + ++ F
Sbjct: 113 Q-----------------DEHTRYECKIGGSPEIKVLWYKDETEIQESSKFRMSFVESVA 155
Query: 452 ILTIPNVKVEDQGEYICRASNDRSALESSVTISIQAEPNFTIPLTDKHMDNQADLTWTCE 511
+L + N+ VED G+Y C A N + SS ++ ++ P F AD+ CE
Sbjct: 156 VLEMYNLSVEDSGDYTCEAHNAAGSASSSTSLKVKEPPVFRKKPHPVETLKGADVHLECE 215
Query: 512 AFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQDNVLT-IRYLNPER-DPAMYQCRAKN 569
G P SW ++ L S + + +N LT I LN + D YQC+A N
Sbjct: 216 LQGTPPFQVSWHKDKRELRS------GKKYKIMSENFLTSIHILNVDSADIGEYQCKASN 269
Query: 570 QL 571
+
Sbjct: 270 DV 271
Score = 52.4 bits (124), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 69/266 (25%), Positives = 104/266 (39%), Gaps = 25/266 (9%)
Query: 507 TWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQDNVLTIRYLNPER-DPAMYQC 565
T+ C G + +W ++ N E P + ++ N T+ L + D Y C
Sbjct: 24 TFKCHVTGTAPIKITWAKD----NREIRPGGNYKMTLVE-NTATLTVLKVTKGDAGQYTC 78
Query: 566 RAKNQLKTRYSSAQLRVLTLKPSFKKRPLESETYAGEGGNVTIFCNPEAAPKPKFVWKKD 625
A N SAQL V P F K+ LE + + C +P+ K +W KD
Sbjct: 79 YASNVAGKDSCSAQLGVQE-PPRFIKK-LEPSRIVKQDEHTRYECKIGGSPEIKVLWYKD 136
Query: 626 GNII--GSGGRRKIFENGNLL-ISPVSRDDSGIYSCTATNVHGMDESKGRLIVLHGPSYY 682
I S R E+ +L + +S +DSG Y+C A N G S L V P +
Sbjct: 137 ETEIQESSKFRMSFVESVAVLEMYNLSVEDSGDYTCEAHNAAGSASSSTSLKVKEPPVFR 196
Query: 683 EQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGN----MDLNELETPNINID 738
++ P T+ ++ L C V++ +R G M N L +
Sbjct: 197 KKPHPVETLKG-ADVHLECELQGTPPFQVSWHKDKRELRSGKKYKIMSENFLTS------ 249
Query: 739 GGLLEITNASFADAGEYECVVKSTVG 764
+ I N AD GEY+C + VG
Sbjct: 250 ---IHILNVDSADIGEYQCKASNDVG 272
Score = 49.7 bits (117), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 76/307 (24%), Positives = 111/307 (36%), Gaps = 37/307 (12%)
Query: 190 PYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDK 249
P+F +P V L + T C+ G W K++ I P +
Sbjct: 6 PFFDLKPVSVDLALGESG-----TFKCHVTGTAPIKITWAKDN--------REIRPGGNY 52
Query: 250 RFTLSGGNLIINDPRQVE-DRGSYHCKASNKFGSIISESVQLAFGFIGEFNLKRAP-EIG 307
+ TL + + + D G Y C ASN G S S QL F K P I
Sbjct: 53 KMTLVENTATLTVLKVTKGDAGQYTCYASNVAGKD-SCSAQLGVQEPPRFIKKLEPSRIV 111
Query: 308 NQNWGKAMFCDPPTNYPGVNYYWARDYFPNFVEEDKRV---FVSYDGALYFSALEQIDAG 364
Q+ C + P + W +D ++E + FV L L D+G
Sbjct: 112 KQDEHTRYECKIGGS-PEIKVLWYKD--ETEIQESSKFRMSFVESVAVLEMYNLSVEDSG 168
Query: 365 NYSCNVQSKVSDTGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPEAPKAGDKVRLECVAF 424
+Y+C + + LKV F++ K P G V LEC
Sbjct: 169 DYTCEAHNAAGSASSS---TSLKVKEPPVFRK--------KPHPVETLKGADVHLECELQ 217
Query: 425 GYPVPSYNWTRRGSPLPRNAYF----ENFNRILTIPNVKVEDQGEYICRASNDRSALESS 480
G P +W + L + ENF + I NV D GEY C+ASND +
Sbjct: 218 GTPPFQVSWHKDKRELRSGKKYKIMSENFLTSIHILNVDSADIGEYQCKASNDVGSYTCV 277
Query: 481 VTISIQA 487
+I+++A
Sbjct: 278 GSITLKA 284
>pdb|2IEP|A Chain A, Crystal Structure Of Immunoglobulin-Like Domains 1 And 2
Of The Receptor Tyrosine Kinase Musk
pdb|2IEP|B Chain B, Crystal Structure Of Immunoglobulin-Like Domains 1 And 2
Of The Receptor Tyrosine Kinase Musk
Length = 192
Score = 66.6 bits (161), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 52/183 (28%), Positives = 75/183 (40%), Gaps = 9/183 (4%)
Query: 489 PNFTIPLTDKHMDNQADLTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQDNV 548
P T PL + T+ C P SW RN L+ L D RY I++N
Sbjct: 8 PVITTPLETVDALVEEVATFMCAVESYPQPEISWTRNKILIK-----LFDT-RYSIRENG 61
Query: 549 LTIRYLNPE-RDPAMYQCRAKNQLKTRYSSAQLRVLTLKPSFKKRPLESETYAGEGGNVT 607
+ L+ E D +Y C A N + S + +KP + P+ + EG
Sbjct: 62 QLLTILSVEDSDDGIYCCTANNGVGGAVESCGALQVKMKPKITRPPINVKII--EGLKAV 119
Query: 608 IFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTATNVHGMD 667
+ C PKP W K + + R + E+G+L I V ++D+G Y C A N G
Sbjct: 120 LPCTTMGNPKPSVSWIKGDSALRENSRIAVLESGSLRIHNVQKEDAGQYRCVAKNSLGTA 179
Query: 668 ESK 670
SK
Sbjct: 180 YSK 182
Score = 60.1 bits (144), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 55/166 (33%), Positives = 74/166 (44%), Gaps = 12/166 (7%)
Query: 607 TIFCNPEAAPKPKFVWKKDGNIIGS-GGRRKIFENGNLL-ISPVSRDDSGIYSCTATN-V 663
T C E+ P+P+ W ++ +I R I ENG LL I V D GIY CTA N V
Sbjct: 26 TFMCAVESYPQPEISWTRNKILIKLFDTRYSIRENGQLLTILSVEDSDDGIYCCTANNGV 85
Query: 664 HGMDESKGRLIVLHGPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIG 723
G ES G L V P P + I L C+ V++I + +R
Sbjct: 86 GGAVESCGALQVKMKPKITRP-PINVKIIEGLKAVLPCTTMGNPKPSVSWIKGDSALR-E 143
Query: 724 NMDLNELETPNINIDGGLLEITNASFADAGEYECVVKSTVGKISTK 769
N + LE+ G L I N DAG+Y CV K+++G +K
Sbjct: 144 NSRIAVLES-------GSLRIHNVQKEDAGQYRCVAKNSLGTAYSK 182
Score = 59.3 bits (142), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 46/161 (28%), Positives = 68/161 (42%), Gaps = 13/161 (8%)
Query: 421 CVAFGYPVPSYNWTRRGSPLP----RNAYFENFNRILTIPNVKVEDQGEYICRASNDR-S 475
C YP P +WTR + R + EN ++LTI +V+ D G Y C A+N
Sbjct: 29 CAVESYPQPEISWTRNKILIKLFDTRYSIREN-GQLLTILSVEDSDDGIYCCTANNGVGG 87
Query: 476 ALESSVTISIQAEPNFTIPLTDKHMDNQADLTWTCEAFGVPDVTYSWFRNGELLNSETLP 535
A+ES + ++ +P T P + + C G P + SW + L
Sbjct: 88 AVESCGALQVKMKPKITRPPINVKIIEGLKAVLPCTTMGNPKPSVSWIKGDSALR----- 142
Query: 536 LEDQDRYFIQDNVLTIRYLNPERDPAMYQCRAKNQLKTRYS 576
E+ ++ L I + E D Y+C AKN L T YS
Sbjct: 143 -ENSRIAVLESGSLRIHNVQKE-DAGQYRCVAKNSLGTAYS 181
Score = 42.7 bits (99), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 43/162 (26%), Positives = 61/162 (37%), Gaps = 15/162 (9%)
Query: 314 AMFCDPPTNYPGVNYYWARDYFPNFVEE-DKRVFVSYDGALY-FSALEQIDAGNYSCNVQ 371
A F +YP W R+ ++ D R + +G L ++E D G Y C
Sbjct: 25 ATFMCAVESYPQPEISWTRNKI--LIKLFDTRYSIRENGQLLTILSVEDSDDGIYCCTAN 82
Query: 372 SKVSDTGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPEAPKAGDKVRLECVAFGYPVPSY 431
+ V + +K+ P + P N G K L C G P PS
Sbjct: 83 NGVGGAVESCGALQVKMKPKIT----RPPINVKII------EGLKAVLPCTTMGNPKPSV 132
Query: 432 NWTRRGSPLPRNAYFENFNR-ILTIPNVKVEDQGEYICRASN 472
+W + S L N+ L I NV+ ED G+Y C A N
Sbjct: 133 SWIKGDSALRENSRIAVLESGSLRIHNVQKEDAGQYRCVAKN 174
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 43/194 (22%), Positives = 72/194 (37%), Gaps = 34/194 (17%)
Query: 184 DKIPRGPYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLI 243
+K+P+ P I P + V L + T C YP P W + ++
Sbjct: 2 EKLPKAP-VITTPLETVDALVEEVA----TFMCAVESYPQPEISWTRN---------KIL 47
Query: 244 DPLSDKRFTL-SGGNLIINDPRQVEDRGSYHCKASNKFGSIISESVQLAFGFIGEFNLKR 302
L D R+++ G L+ + D G Y C A+N G + G +K
Sbjct: 48 IKLFDTRYSIRENGQLLTILSVEDSDDGIYCCTANNGVGGAVESC--------GALQVKM 99
Query: 303 APEIGN--------QNWGKAMFCDPPTNYPGVNYYWARDYFPNFVEEDKRVFVSYDGALY 354
P+I + + C N P + W + + + E+ R+ V G+L
Sbjct: 100 KPKITRPPINVKIIEGLKAVLPCTTMGN-PKPSVSWIKG--DSALRENSRIAVLESGSLR 156
Query: 355 FSALEQIDAGNYSC 368
+++ DAG Y C
Sbjct: 157 IHNVQKEDAGQYRC 170
Score = 38.1 bits (87), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 33/78 (42%), Gaps = 10/78 (12%)
Query: 213 TLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVEDRGSY 272
L C G P PS W K D + + L G+L I++ Q ED G Y
Sbjct: 119 VLPCTTMGNPKPSVSWIKGDSALRE---------NSRIAVLESGSLRIHN-VQKEDAGQY 168
Query: 273 HCKASNKFGSIISESVQL 290
C A N G+ S+ V+L
Sbjct: 169 RCVAKNSLGTAYSKLVKL 186
>pdb|2YD9|A Chain A, Crystal Structure Of The N-Terminal Ig1-3 Module Of Human
Receptor Protein Tyrosine Phosphatase Sigma
Length = 304
Score = 65.9 bits (159), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 73/272 (26%), Positives = 111/272 (40%), Gaps = 27/272 (9%)
Query: 507 TWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQDNVLTIRYLNPERDPAMYQCR 566
++ C+A G P +W + G+ +NS+ + D VL I+ L RD +Y+C
Sbjct: 25 SFVCQATGDPKPRVTWNKKGKKVNSQRFETIEFDES--AGAVLRIQPLRTPRDENVYECV 82
Query: 567 AKNQLKTRYSSAQLRVL---TLKPSFKKRPLESETYAGEGG-NVTIFCNPEAAPKPKFVW 622
A+N + A+L VL L F + + E T+ C P P+ W
Sbjct: 83 AQNSVGEITVHAKLTVLREDQLPSGFPNIDMGPQLKVVERTRTATMLCAASGNPDPEITW 142
Query: 623 KKDGNII---GSGGRRKIFENGNLLISPVSRDDSGIYSCTATNVHGMDESKGR---LIVL 676
KD + S GR K +G L I D G Y C ATN G+ S + V
Sbjct: 143 FKDFLPVDPSASNGRIKQLRSGALQIESSEETDQGKYECVATNSAGVRYSSPANLYVRVQ 202
Query: 677 HGPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNIN 736
+ + LP I N+ + C A + V ++ G DL TP +
Sbjct: 203 NVAPRFSILPMSHEIMPGGNVNITCVAVGSPMPYVKWMQ-------GAEDL----TPEDD 251
Query: 737 IDGG--LLEITNASFADAGEYECVVKSTVGKI 766
+ G +LE+T+ D+ Y CV S++G I
Sbjct: 252 MPVGRNVLELTDVK--DSANYTCVAMSSLGVI 281
Score = 65.1 bits (157), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 73/309 (23%), Positives = 112/309 (36%), Gaps = 54/309 (17%)
Query: 404 PKTFPEAPK-----AGDKVRLECVAFGYPVPSYNWTRRGSPLPRN-----AYFENFNRIL 453
P F + PK +G C A G P P W ++G + + E+ +L
Sbjct: 6 PPRFIKEPKDQIGVSGGVASFVCQATGDPKPRVTWNKKGKKVNSQRFETIEFDESAGAVL 65
Query: 454 TIPNVKV-EDQGEYICRASNDRSALESSVTISIQAE-------PNFTIPLTDKHMDNQAD 505
I ++ D+ Y C A N + +++ E PN + K ++
Sbjct: 66 RIQPLRTPRDENVYECVAQNSVGEITVHAKLTVLREDQLPSGFPNIDMGPQLKVVERTRT 125
Query: 506 LTWTCEAFGVPDVTYSWFR----------NGEL--LNSETLPLEDQDRYFIQDNVLTIRY 553
T C A G PD +WF+ NG + L S L +E +
Sbjct: 126 ATMLCAASGNPDPEITWFKDFLPVDPSASNGRIKQLRSGALQIESSE------------- 172
Query: 554 LNPERDPAMYQCRAKNQLKTRYSSAQ---LRVLTLKPSFKKRPLESETYAGEGGNVTIFC 610
E D Y+C A N RYSS +RV + P F P+ E GGNV I C
Sbjct: 173 ---ETDQGKYECVATNSAGVRYSSPANLYVRVQNVAPRFSILPMSHEIMP--GGNVNITC 227
Query: 611 NPEAAPKPKFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTATNVHGMDESK 670
+P P W + + + N ++ DS Y+C A + G+ E+
Sbjct: 228 VAVGSPMPYVKWMQGAEDLTPEDDMPVGRN---VLELTDVKDSANYTCVAMSSLGVIEAV 284
Query: 671 GRLIVLHGP 679
++ V P
Sbjct: 285 AQITVKSLP 293
Score = 60.1 bits (144), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 74/313 (23%), Positives = 114/313 (36%), Gaps = 39/313 (12%)
Query: 190 PYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDK 249
P FIK+P D + + + C A G P P W K+ + I+
Sbjct: 7 PRFIKEPKDQIGVSGGVA-----SFVCQATGDPKPRVTWNKKGKKVNSQRFETIE----- 56
Query: 250 RFTLSGGNLIINDP-RQVEDRGSYHCKASNKFGSIISESV-------QLAFGFIGEFNLK 301
F S G ++ P R D Y C A N G I + QL GF N+
Sbjct: 57 -FDESAGAVLRIQPLRTPRDENVYECVAQNSVGEITVHAKLTVLREDQLPSGFP---NID 112
Query: 302 RAPEIG--NQNWGKAMFCDPPTNYPGVNYYWARDYFP-NFVEEDKRVFVSYDGALYFSAL 358
P++ + M C N P W +D+ P + + R+ GAL +
Sbjct: 113 MGPQLKVVERTRTATMLCAASGN-PDPEITWFKDFLPVDPSASNGRIKQLRSGALQIESS 171
Query: 359 EQIDAGNYSCNVQSKVSDTGRNGPFF--PLKVFPHSNFQQLKFPNNFPKTFPEAPKAGDK 416
E+ D G Y C T G + P ++ +F + P + P G
Sbjct: 172 EETDQGKYECVA------TNSAGVRYSSPANLYVRVQNVAPRF-SILPMSHEIMP--GGN 222
Query: 417 VRLECVAFGYPVPSYNWTRRGSPLPRNAYFENFNRILTIPNVKVEDQGEYICRASNDRSA 476
V + CVA G P+P W + L +L + +VK D Y C A +
Sbjct: 223 VNITCVAVGSPMPYVKWMQGAEDLTPEDDMPVGRNVLELTDVK--DSANYTCVAMSSLGV 280
Query: 477 LESSVTISIQAEP 489
+E+ I++++ P
Sbjct: 281 IEAVAQITVKSLP 293
Score = 45.1 bits (105), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 49/198 (24%), Positives = 76/198 (38%), Gaps = 36/198 (18%)
Query: 587 PSFKKRPLESETYAGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFE-----NG 641
P F K P + GG + C PKP+ W K G + S R + E
Sbjct: 7 PRFIKEP--KDQIGVSGGVASFVCQATGDPKPRVTWNKKGKKVNS-QRFETIEFDESAGA 63
Query: 642 NLLISPV-SRDDSGIYSCTATNVHGMDESKGRLIVLHGPSYYEQLP---------PKITI 691
L I P+ + D +Y C A N G +L VL +QLP P++ +
Sbjct: 64 VLRIQPLRTPRDENVYECVAQNSVGEITVHAKLTVLR----EDQLPSGFPNIDMGPQLKV 119
Query: 692 AAH-RNLQLRCSAHTEELLDVAYIWTHNGVRI----GNMDLNELETPNINIDGGLLEITN 746
R + C+A D W + + + N + +L + G L+I +
Sbjct: 120 VERTRTATMLCAASGNP--DPEITWFKDFLPVDPSASNGRIKQLRS-------GALQIES 170
Query: 747 ASFADAGEYECVVKSTVG 764
+ D G+YECV ++ G
Sbjct: 171 SEETDQGKYECVATNSAG 188
>pdb|2WIM|A Chain A, Crystal Structure Of Ncam2 Ig1-3
pdb|2WIM|B Chain B, Crystal Structure Of Ncam2 Ig1-3
Length = 291
Score = 64.3 bits (155), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 64/272 (23%), Positives = 105/272 (38%), Gaps = 16/272 (5%)
Query: 414 GDKVRLECVAFGYPVPSYNWTR-RGSPLPRNAYF----ENFNRILTIPNVKVEDQGEYIC 468
G+ C A G P S +W +G + E LTI N +ED G Y C
Sbjct: 19 GESKFFTCTAIGEP-ESIDWYNPQGEKIISTQRVVVQKEGVRSRLTIYNANIEDAGIYRC 77
Query: 469 RASNDRSAL-ESSVTISIQAEPNFTIPLTDKHMDNQADLTWTCEAFGVPDVTYSWFRNGE 527
+A++ + E++V + I + F ++ + D C P SW +
Sbjct: 78 QATDAKGQTQEATVVLEIYQKLTFREVVSPQEFKQGEDAEVVCRVSSSPAPAVSWLYH-- 135
Query: 528 LLNSETLPLEDQDRYFIQDNVLTIRYLNPERDPAMYQCRAKNQLKTRYSSAQLRVLTLKP 587
N E + D +R+ + N + D +Y+C + + + + V+ P
Sbjct: 136 --NEEVTTISD-NRFAMLANNNLQILNINKSDEGIYRCEGRVEARGEIDFRDIIVIVNVP 192
Query: 588 SFKKRPLES-ETYAGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGN--LL 644
P +S A G +T C +P+P W ++G +I + I + N L
Sbjct: 193 PAISMPQKSFNATAERGEEMTFSCRASGSPEPAISWFRNGKLIEEN-EKYILKGSNTELT 251
Query: 645 ISPVSRDDSGIYSCTATNVHGMDESKGRLIVL 676
+ + D G Y C ATN G DE + L V
Sbjct: 252 VRNIINSDGGPYVCRATNKAGEDEKQAFLQVF 283
Score = 50.8 bits (120), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 50/217 (23%), Positives = 87/217 (40%), Gaps = 26/217 (11%)
Query: 266 VEDRGSYHCKASNKFGSIISESVQLAFGFIGEFNLKRAPEIGNQNWGKAMFCDPPTN-YP 324
+ED G Y C+A++ G +V L F +P+ Q + C ++ P
Sbjct: 69 IEDAGIYRCQATDAKGQTQEATVVLEIYQKLTFREVVSPQEFKQGEDAEVVCRVSSSPAP 128
Query: 325 GVNYYWARDYFPNFVEEDKRVFVSYDGALYFSALEQIDAGNYSCNVQSKVSDTGRNGPFF 384
V++ + + D R + + L + + D G Y C + +V G
Sbjct: 129 AVSWLYHNEEVTTI--SDNRFAMLANNNLQILNINKSDEGIYRC--EGRVEARG------ 178
Query: 385 PLKVFPHSNFQQLKFPNNFP-------KTFPEAPKAGDKVRLECVAFGYPVPSYNWTRRG 437
+F+ + N P K+F + G+++ C A G P P+ +W R G
Sbjct: 179 ------EIDFRDIIVIVNVPPAISMPQKSFNATAERGEEMTFSCRASGSPEPAISWFRNG 232
Query: 438 SPLPRNAYF--ENFNRILTIPNVKVEDQGEYICRASN 472
+ N + + N LT+ N+ D G Y+CRA+N
Sbjct: 233 KLIEENEKYILKGSNTELTVRNIINSDGGPYVCRATN 269
Score = 39.7 bits (91), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 62/281 (22%), Positives = 106/281 (37%), Gaps = 22/281 (7%)
Query: 492 TIPLTDKHMDNQADLTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQD----N 547
TI L+ + +TC A G P+ + W+ N + + R +Q +
Sbjct: 8 TISLSKVELSVGESKFFTCTAIGEPE-SIDWY------NPQGEKIISTQRVVVQKEGVRS 60
Query: 548 VLTIRYLNPERDPAMYQCRAKNQLKTRYSSAQLRVLTLKPSFKKRPLESETYAGEGGNVT 607
LTI N E D +Y+C+A + K + A + VL + R + S +G +
Sbjct: 61 RLTIYNANIE-DAGIYRCQATD-AKGQTQEATV-VLEIYQKLTFREVVSPQEFKQGEDAE 117
Query: 608 IFCNPEAAPKPKFVWKKDGNIIG--SGGRRKIFENGNLLISPVSRDDSGIYSCTA-TNVH 664
+ C ++P P W + S R + N NL I +++ D GIY C
Sbjct: 118 VVCRVSSSPAPAVSWLYHNEEVTTISDNRFAMLANNNLQILNINKSDEGIYRCEGRVEAR 177
Query: 665 GMDESKGRLIVLHGPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGN 724
G + + +++++ P A R ++ S + A W NG I
Sbjct: 178 GEIDFRDIIVIVNVPPAISMPQKSFNATAERGEEMTFSCRASGSPEPAISWFRNGKLIEE 237
Query: 725 MDLNELETPNINIDGGLLEITNASFADAGEYECVVKSTVGK 765
+ L+ N L + N +D G Y C + G+
Sbjct: 238 NEKYILKGSNTE-----LTVRNIINSDGGPYVCRATNKAGE 273
Score = 38.5 bits (88), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 36/77 (46%), Gaps = 21/77 (27%)
Query: 211 DITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGNL------IINDPR 264
++T SC A G P P+ WF+ LI+ ++++ L G N IIN
Sbjct: 211 EMTFSCRASGSPEPAISWFRN--------GKLIE--ENEKYILKGSNTELTVRNIINS-- 258
Query: 265 QVEDRGSYHCKASNKFG 281
D G Y C+A+NK G
Sbjct: 259 ---DGGPYVCRATNKAG 272
>pdb|3LCY|A Chain A, Titin Ig Tandem Domains A164-A165
pdb|3LCY|B Chain B, Titin Ig Tandem Domains A164-A165
pdb|3LCY|C Chain C, Titin Ig Tandem Domains A164-A165
pdb|3LCY|D Chain D, Titin Ig Tandem Domains A164-A165
Length = 197
Score = 63.2 bits (152), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 43/147 (29%), Positives = 69/147 (46%), Gaps = 10/147 (6%)
Query: 412 KAGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYF----ENFNRILTIPNVKVEDQGEYI 467
K G+ +L C G P+P W R G L ++ + + LT+ + ED+G Y
Sbjct: 20 KLGEAAQLSCQIVGRPLPDIKWYRFGKELIQSRKYKMSSDGRTHTLTVMTEEQEDEGVYT 79
Query: 468 CRASNDRSALESSVTISIQAEPNF--TIPLTDKHMDN-QADLTWTCEAFGVPDVTYSWFR 524
C A+N+ +E+S + +QA P F PL +K+ + L G P +WF
Sbjct: 80 CIATNEVGEVETSSKLLLQATPQFHPGYPLKEKYYGAVGSTLRLHVMYIGRPVPAMTWFH 139
Query: 525 NGELL-NSETLPLEDQDRY--FIQDNV 548
+LL NSE + +E+ + Y + NV
Sbjct: 140 GQKLLQNSENITIENTEHYTHLVMKNV 166
Score = 41.2 bits (95), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/105 (24%), Positives = 46/105 (43%), Gaps = 5/105 (4%)
Query: 587 PSFKKRPLESETYAGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENG---NL 643
P +K + T GE ++ C P P W + G + + K+ +G L
Sbjct: 8 PGIRKEMKDVTTKLGEAAQLS--CQIVGRPLPDIKWYRFGKELIQSRKYKMSSDGRTHTL 65
Query: 644 LISPVSRDDSGIYSCTATNVHGMDESKGRLIVLHGPSYYEQLPPK 688
+ ++D G+Y+C ATN G E+ +L++ P ++ P K
Sbjct: 66 TVMTEEQEDEGVYTCIATNEVGEVETSSKLLLQATPQFHPGYPLK 110
Score = 37.0 bits (84), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 40/164 (24%), Positives = 65/164 (39%), Gaps = 14/164 (8%)
Query: 509 TCEAFGVPDVTYSWFRNG-ELLNSETLPLEDQDRYFIQDNVLTIRYLNPERDPAMYQCRA 567
+C+ G P W+R G EL+ S + R + LT+ + D +Y C A
Sbjct: 28 SCQIVGRPLPDIKWYRFGKELIQSRKYKMSSDGR----THTLTV-MTEEQEDEGVYTCIA 82
Query: 568 KNQLKTRYSSAQLRVLTLKPSFK-KRPLESETYAGEGGNVTIFCNPEAAPKPKFVWKKDG 626
N++ +S++L +L P F PL+ + Y G + + P P W G
Sbjct: 83 TNEVGEVETSSKL-LLQATPQFHPGYPLKEKYYGAVGSTLRLHVMYIGRPVPAMTW-FHG 140
Query: 627 NIIGSGGRRKIFEN----GNLLISPVSRD-DSGIYSCTATNVHG 665
+ EN +L++ V R +G Y +NV G
Sbjct: 141 QKLLQNSENITIENTEHYTHLVMKNVQRKTHAGKYKVQLSNVFG 184
>pdb|1QZ1|A Chain A, Crystal Structure Of The Ig 1-2-3 Fragment Of Ncam
Length = 291
Score = 62.4 bits (150), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 53/236 (22%), Positives = 91/236 (38%), Gaps = 28/236 (11%)
Query: 266 VEDRGSYHCKASNKFGSIISESVQLAFGFIGEFNLKRAPEIGNQNWGKAMFCDPPTNYPG 325
++D G Y C + + G+ +V + F P+ + + CD ++ P
Sbjct: 71 IDDAGIYKCVVTAEDGTQSEATVNVKIFQKLMFKNAPTPQEFKEGEDAVIVCDVVSSLPP 130
Query: 326 VNYYWARDYFPNFVEEDKRVFVSYDGALYFSALEQIDAGNYSCNVQSKVSDTGRNGPFFP 385
W +++D R V + L +++ D G Y C GR
Sbjct: 131 -TIIWKHKGRDVILKKDVRFIVLSNNYLQIRGIKKTDEGTYRCE--------GR------ 175
Query: 386 LKVFPHSNFQQLKFPNNFPKTFPE-------APKAGDKVRLECVAFGYPVPSYNWTRRGS 438
+ NF+ ++ N P T G V L C A G+P P+ +WT+ G
Sbjct: 176 ILARGEINFKDIQVIVNVPPTVQARQSIVNATANLGQSVTLVCDADGFPEPTMSWTKDGE 235
Query: 439 PLP------RNAYFENFNRILTIPNVKVEDQGEYICRASNDRSALESSVTISIQAE 488
P+ F + + LTI NV D+ EY+C A N ++S+ + + A+
Sbjct: 236 PIENEEEDDEKHIFSDDSSELTIRNVDKNDEAEYVCIAENKAGEQDASIHLKVFAK 291
Score = 60.5 bits (145), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 55/231 (23%), Positives = 95/231 (41%), Gaps = 12/231 (5%)
Query: 453 LTIPNVKVEDQGEYICRAS-NDRSALESSVTISIQAEPNFTIPLTDKHMDNQADLTWTCE 511
LTI N ++D G Y C + D + E++V + I + F T + D C+
Sbjct: 64 LTIYNANIDDAGIYKCVVTAEDGTQSEATVNVKIFQKLMFKNAPTPQEFKEGEDAVIVCD 123
Query: 512 AFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQDNVLTIRYLNPERDPAMYQCRAKNQL 571
T W G + + +D + +N L IR + + D Y+C +
Sbjct: 124 VVSSLPPTIIWKHKGR----DVILKKDVRFIVLSNNYLQIRGIK-KTDEGTYRCEGRILA 178
Query: 572 KTRYSSAQLRVLT-LKPSFKKRPLESETYAGEGGNVTIFCNPEAAPKPKFVWKKDGNIIG 630
+ + ++V+ + P+ + R A G +VT+ C+ + P+P W KDG I
Sbjct: 179 RGEINFKDIQVIVNVPPTVQARQSIVNATANLGQSVTLVCDADGFPEPTMSWTKDGEPIE 238
Query: 631 S---GGRRKIF--ENGNLLISPVSRDDSGIYSCTATNVHGMDESKGRLIVL 676
+ + IF ++ L I V ++D Y C A N G ++ L V
Sbjct: 239 NEEEDDEKHIFSDDSSELTIRNVDKNDEAEYVCIAENKAGEQDASIHLKVF 289
Score = 50.1 bits (118), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 61/267 (22%), Positives = 103/267 (38%), Gaps = 18/267 (6%)
Query: 508 WTCEAFG-VPDVTYSWFR-NGELLNSETLPLEDQDRYFI---QDNVLTIRYLNPERDPA- 561
+ C+ G D SWF NGE L+ +Q R + D+ T+ N D A
Sbjct: 22 FLCQVAGDAKDKDISWFSPNGEKLSP------NQQRISVVWNDDDSSTLTIYNANIDDAG 75
Query: 562 MYQCRAKNQLKTRYSSAQLRVLTLKPSFKKRPLESETYAGEGGNVTIFCNPEAAPKPKFV 621
+Y+C + T+ + + K FK P E GE + I C+ ++ P +
Sbjct: 76 IYKCVVTAEDGTQSEATVNVKIFQKLMFKNAPTPQEFKEGE--DAVIVCDVVSSLPPTII 133
Query: 622 WKKDGN--IIGSGGRRKIFENGNLLISPVSRDDSGIYSCTATNV-HGMDESKGRLIVLHG 678
WK G I+ R + N L I + + D G Y C + G K ++++
Sbjct: 134 WKHKGRDVILKKDVRFIVLSNNYLQIRGIKKTDEGTYRCEGRILARGEINFKDIQVIVNV 193
Query: 679 PSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINID 738
P + + A+ + + + WT +G I N + ++ E + D
Sbjct: 194 PPTVQARQSIVNATANLGQSVTLVCDADGFPEPTMSWTKDGEPIENEEEDD-EKHIFSDD 252
Query: 739 GGLLEITNASFADAGEYECVVKSTVGK 765
L I N D EY C+ ++ G+
Sbjct: 253 SSELTIRNVDKNDEAEYVCIAENKAGE 279
Score = 30.4 bits (67), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 39/86 (45%), Gaps = 14/86 (16%)
Query: 204 SKRSILN-------DITLSCYAGGYPNPSYEWFKE-DYVQDRLVANLIDPLSDKRFTLSG 255
+++SI+N +TL C A G+P P+ W K+ + +++ + SD L+
Sbjct: 199 ARQSIVNATANLGQSVTLVCDADGFPEPTMSWTKDGEPIENEEEDDEKHIFSDDSSELTI 258
Query: 256 GNLIINDPRQVEDRGSYHCKASNKFG 281
N+ N D Y C A NK G
Sbjct: 259 RNVDKN------DEAEYVCIAENKAG 278
>pdb|2YD4|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of
Chicken Receptor Protein Tyrosine Phosphatase Sigma
Length = 210
Score = 58.9 bits (141), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 48/167 (28%), Positives = 70/167 (41%), Gaps = 9/167 (5%)
Query: 507 TWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQDNVLTIRYLNPERDPAMYQCR 566
++ C+A G P +W + G+ +NS+ + D VL I+ L RD +Y+C
Sbjct: 25 SFVCQATGDPKPRVTWNKKGKKVNSQRFETIEFDES--AGAVLRIQPLRTPRDENIYECV 82
Query: 567 AKNQLKTRYSSAQLRVL---TLKPSFKKRPLESETYAGEGG-NVTIFCNPEAAPKPKFVW 622
A+N A+L VL L P F + + E T+ C P P+ W
Sbjct: 83 AQNPHGEVTVHAKLTVLREDQLPPGFPNIDMGPQLKVVERTRTATMLCAASGNPDPEITW 142
Query: 623 KKDGNIIG---SGGRRKIFENGNLLISPVSRDDSGIYSCTATNVHGM 666
KD + S GR K +G L I D G Y C A+N G+
Sbjct: 143 FKDFLPVDPSTSNGRIKQLRSGGLQIESSEETDQGKYECVASNSAGV 189
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 51/198 (25%), Positives = 77/198 (38%), Gaps = 36/198 (18%)
Query: 587 PSFKKRPLESETYAGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFE-----NG 641
P F K+P++ GG + C PKP+ W K G + S R + E
Sbjct: 7 PVFIKKPVDQ--IGVSGGVASFVCQATGDPKPRVTWNKKGKKVNS-QRFETIEFDESAGA 63
Query: 642 NLLISPV-SRDDSGIYSCTATNVHGMDESKGRLIVLHGPSYYEQLPPKI----------T 690
L I P+ + D IY C A N HG +L VL +QLPP
Sbjct: 64 VLRIQPLRTPRDENIYECVAQNPHGEVTVHAKLTVLR----EDQLPPGFPNIDMGPQLKV 119
Query: 691 IAAHRNLQLRCSAHTEELLDVAYIWTHNGVRI----GNMDLNELETPNINIDGGLLEITN 746
+ R + C+A D W + + + N + +L + G L+I +
Sbjct: 120 VERTRTATMLCAASGNP--DPEITWFKDFLPVDPSTSNGRIKQLRS-------GGLQIES 170
Query: 747 ASFADAGEYECVVKSTVG 764
+ D G+YECV ++ G
Sbjct: 171 SEETDQGKYECVASNSAG 188
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 46/191 (24%), Positives = 69/191 (36%), Gaps = 28/191 (14%)
Query: 190 PYFIKQPTDVVFDLSKRSILNDI-TLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSD 248
P FIK+P D + + + + C A G P P W K+ + I+
Sbjct: 7 PVFIKKPVDQI------GVSGGVASFVCQATGDPKPRVTWNKKGKKVNSQRFETIE---- 56
Query: 249 KRFTLSGGNLIINDP-RQVEDRGSYHCKASNKFGSIISESV-------QLAFGFIGEFNL 300
F S G ++ P R D Y C A N G + + QL GF N+
Sbjct: 57 --FDESAGAVLRIQPLRTPRDENIYECVAQNPHGEVTVHAKLTVLREDQLPPGFP---NI 111
Query: 301 KRAPEIG--NQNWGKAMFCDPPTNYPGVNYYWARDYFP-NFVEEDKRVFVSYDGALYFSA 357
P++ + M C N P W +D+ P + + R+ G L +
Sbjct: 112 DMGPQLKVVERTRTATMLCAASGN-PDPEITWFKDFLPVDPSTSNGRIKQLRSGGLQIES 170
Query: 358 LEQIDAGNYSC 368
E+ D G Y C
Sbjct: 171 SEETDQGKYEC 181
Score = 41.2 bits (95), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 44/190 (23%), Positives = 67/190 (35%), Gaps = 41/190 (21%)
Query: 413 AGDKVRLECVAFGYPVPSYNWTRRGSPLPRN-----AYFENFNRILTIPNVKV-EDQGEY 466
+G C A G P P W ++G + + E+ +L I ++ D+ Y
Sbjct: 20 SGGVASFVCQATGDPKPRVTWNKKGKKVNSQRFETIEFDESAGAVLRIQPLRTPRDENIY 79
Query: 467 ICRASNDRSALESSVTISIQAE-------PNFTIPLTDKHMDNQADLTWTCEAFGVPDVT 519
C A N + +++ E PN + K ++ T C A G PD
Sbjct: 80 ECVAQNPHGEVTVHAKLTVLREDQLPPGFPNIDMGPQLKVVERTRTATMLCAASGNPDPE 139
Query: 520 YSWFR----------NGEL--LNSETLPLEDQDRYFIQDNVLTIRYLNPERDPAMYQCRA 567
+WF+ NG + L S L +E + E D Y+C A
Sbjct: 140 ITWFKDFLPVDPSTSNGRIKQLRSGGLQIESSE----------------ETDQGKYECVA 183
Query: 568 KNQLKTRYSS 577
N RYSS
Sbjct: 184 SNSAGVRYSS 193
Score = 36.2 bits (82), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 34/71 (47%), Gaps = 11/71 (15%)
Query: 213 TLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDP-LSDKRFT-LSGGNLIINDPRQVEDRG 270
T+ C A G P+P WFK D++ +DP S+ R L G L I + D+G
Sbjct: 127 TMLCAASGNPDPEITWFK-DFLP-------VDPSTSNGRIKQLRSGGLQIESSEET-DQG 177
Query: 271 SYHCKASNKFG 281
Y C ASN G
Sbjct: 178 KYECVASNSAG 188
>pdb|3OJV|C Chain C, Crystal Structure Of Fgf1 Complexed With The Ectodomain Of
Fgfr1c Exhibiting An Ordered Ligand
Specificity-Determining Betac'-Betae Loop
pdb|3OJV|D Chain D, Crystal Structure Of Fgf1 Complexed With The Ectodomain Of
Fgfr1c Exhibiting An Ordered Ligand
Specificity-Determining Betac'-Betae Loop
Length = 226
Score = 58.9 bits (141), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 48/189 (25%), Positives = 83/189 (43%), Gaps = 19/189 (10%)
Query: 594 LESETYAGEGGNVTIF-CNPEAAPKPKFVWKKDGNIIGS----GGRRKIFENGNLLISPV 648
+E + +A F C P+P W K+G GG + + ++++ V
Sbjct: 22 MEKKLHAVPAAKTVKFKCPSSGTPQPTLRWLKNGKEFKPDHRIGGYKVRYATWSIIMDSV 81
Query: 649 SRDDSGIYSCTATNVHGMDESKGRLIVL----HGPSYYEQLPPKITIAAHRNLQLRCSAH 704
D G Y+C N +G +L V+ H P LP T+A N++ C +
Sbjct: 82 VPSDKGNYTCIVENEYGSINHTYQLDVVERSPHRPILQAGLPANKTVALGSNVEFMCKVY 141
Query: 705 TEELLDVAYIWTH---NGVRIGNMDL---NELETPNINI---DGGLLEITNASFADAGEY 755
++ + ++ H NG +IG +L L+T +N + +L + N SF DAGEY
Sbjct: 142 SDPQPHIQWL-KHIEVNGSKIGPDNLPYVQILKTAGVNTTDKEMEVLHLRNVSFEDAGEY 200
Query: 756 ECVVKSTVG 764
C+ +++G
Sbjct: 201 TCLAGNSIG 209
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 47/189 (24%), Positives = 71/189 (37%), Gaps = 29/189 (15%)
Query: 510 CEAFGVPDVTYSWFRNGELLNSETLPLEDQDRY----FIQDNVLTIRYLNPERDPAMYQC 565
C + G P T W +NG+ + + RY I D+V+ D Y C
Sbjct: 39 CPSSGTPQPTLRWLKNGKEFKPDHRIGGYKVRYATWSIIMDSVV-------PSDKGNYTC 91
Query: 566 RAKNQLKTRYSSAQLRVLTLKPS--FKKRPLESETYAGEGGNVTIFCNPEAAPKPKFVWK 623
+N+ + + QL V+ P + L + G NV C + P+P W
Sbjct: 92 IVENEYGSINHTYQLDVVERSPHRPILQAGLPANKTVALGSNVEFMCKVYSDPQPHIQWL 151
Query: 624 K----DGNIIG------------SGGRRKIFENGNLLISPVSRDDSGIYSCTATNVHGMD 667
K +G+ IG +G E L + VS +D+G Y+C A N G+
Sbjct: 152 KHIEVNGSKIGPDNLPYVQILKTAGVNTTDKEMEVLHLRNVSFEDAGEYTCLAGNSIGLS 211
Query: 668 ESKGRLIVL 676
L VL
Sbjct: 212 HHSAWLTVL 220
Score = 38.9 bits (89), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 35/141 (24%), Positives = 51/141 (36%), Gaps = 23/141 (16%)
Query: 362 DAGNYSCNVQSKVSDTGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPEAPKAGDKVRLEC 421
D GNY+C V+++ ++ PH Q P N KT G V C
Sbjct: 85 DKGNYTCIVENEYGSINHTYQLDVVERSPHRPILQAGLPAN--KTV----ALGSNVEFMC 138
Query: 422 VAFGYPVPSYNWTRR----GSPL-PRNAYFENFNR------------ILTIPNVKVEDQG 464
+ P P W + GS + P N + + +L + NV ED G
Sbjct: 139 KVYSDPQPHIQWLKHIEVNGSKIGPDNLPYVQILKTAGVNTTDKEMEVLHLRNVSFEDAG 198
Query: 465 EYICRASNDRSALESSVTISI 485
EY C A N S +++
Sbjct: 199 EYTCLAGNSIGLSHHSAWLTV 219
Score = 38.1 bits (87), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 42/207 (20%), Positives = 80/207 (38%), Gaps = 28/207 (13%)
Query: 400 PNNFPKTFPEAPKAGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYFENFNR-----ILT 454
P K P A V+ +C + G P P+ W + G + + +
Sbjct: 19 PEKMEKKLHAVP-AAKTVKFKCPSSGTPQPTLRWLKNGKEFKPDHRIGGYKVRYATWSII 77
Query: 455 IPNVKVEDQGEYICRASNDRSALESSVTIS-IQAEPNFTIPL----TDKHMDNQADLTWT 509
+ +V D+G Y C N+ ++ + + ++ P+ I +K + +++ +
Sbjct: 78 MDSVVPSDKGNYTCIVENEYGSINHTYQLDVVERSPHRPILQAGLPANKTVALGSNVEFM 137
Query: 510 CEAFGVPDVTYSWFR----NGELLNSETLP---------LEDQDRYFIQDNVLTIRYLNP 556
C+ + P W + NG + + LP + D+ + VL +R ++
Sbjct: 138 CKVYSDPQPHIQWLKHIEVNGSKIGPDNLPYVQILKTAGVNTTDK---EMEVLHLRNVSF 194
Query: 557 ERDPAMYQCRAKNQLKTRYSSAQLRVL 583
E D Y C A N + + SA L VL
Sbjct: 195 E-DAGEYTCLAGNSIGLSHHSAWLTVL 220
Score = 36.2 bits (82), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 27/107 (25%), Positives = 44/107 (41%), Gaps = 11/107 (10%)
Query: 179 DIENPDKIPRGPYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFK--EDYVQD 236
D P+++P PY+ P + L + C + G P P+ W K +++ D
Sbjct: 3 DNTKPNRMPVAPYWT-SPEKMEKKLHAVPAAKTVKFKCPSSGTPQPTLRWLKNGKEFKPD 61
Query: 237 RLVANLIDPLSDKRFTLSGGNLIINDPRQVEDRGSYHCKASNKFGSI 283
+ + T S II D D+G+Y C N++GSI
Sbjct: 62 HRIGGY----KVRYATWS----IIMDSVVPSDKGNYTCIVENEYGSI 100
>pdb|1CVS|C Chain C, Crystal Structure Of A Dimeric Fgf2-Fgfr1 Complex
pdb|1CVS|D Chain D, Crystal Structure Of A Dimeric Fgf2-Fgfr1 Complex
pdb|1FQ9|C Chain C, Crystal Structure Of A Ternary Fgf2-Fgfr1-Heparin Complex
pdb|1FQ9|D Chain D, Crystal Structure Of A Ternary Fgf2-Fgfr1-Heparin Complex
Length = 225
Score = 58.9 bits (141), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 48/189 (25%), Positives = 83/189 (43%), Gaps = 19/189 (10%)
Query: 594 LESETYAGEGGNVTIF-CNPEAAPKPKFVWKKDGNIIGS----GGRRKIFENGNLLISPV 648
+E + +A F C P+P W K+G GG + + ++++ V
Sbjct: 21 MEKKLHAVPAAKTVKFKCPSSGTPQPTLRWLKNGKEFKPDHRIGGYKVRYATWSIIMDSV 80
Query: 649 SRDDSGIYSCTATNVHGMDESKGRLIVL----HGPSYYEQLPPKITIAAHRNLQLRCSAH 704
D G Y+C N +G +L V+ H P LP T+A N++ C +
Sbjct: 81 VPSDKGNYTCIVENEYGSINHTYQLDVVERSPHRPILQAGLPANKTVALGSNVEFMCKVY 140
Query: 705 TEELLDVAYIWTH---NGVRIGNMDL---NELETPNINI---DGGLLEITNASFADAGEY 755
++ + ++ H NG +IG +L L+T +N + +L + N SF DAGEY
Sbjct: 141 SDPQPHIQWL-KHIEVNGSKIGPDNLPYVQILKTAGVNTTDKEMEVLHLRNVSFEDAGEY 199
Query: 756 ECVVKSTVG 764
C+ +++G
Sbjct: 200 TCLAGNSIG 208
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 47/189 (24%), Positives = 71/189 (37%), Gaps = 29/189 (15%)
Query: 510 CEAFGVPDVTYSWFRNGELLNSETLPLEDQDRY----FIQDNVLTIRYLNPERDPAMYQC 565
C + G P T W +NG+ + + RY I D+V+ D Y C
Sbjct: 38 CPSSGTPQPTLRWLKNGKEFKPDHRIGGYKVRYATWSIIMDSVV-------PSDKGNYTC 90
Query: 566 RAKNQLKTRYSSAQLRVLTLKPS--FKKRPLESETYAGEGGNVTIFCNPEAAPKPKFVWK 623
+N+ + + QL V+ P + L + G NV C + P+P W
Sbjct: 91 IVENEYGSINHTYQLDVVERSPHRPILQAGLPANKTVALGSNVEFMCKVYSDPQPHIQWL 150
Query: 624 K----DGNIIG------------SGGRRKIFENGNLLISPVSRDDSGIYSCTATNVHGMD 667
K +G+ IG +G E L + VS +D+G Y+C A N G+
Sbjct: 151 KHIEVNGSKIGPDNLPYVQILKTAGVNTTDKEMEVLHLRNVSFEDAGEYTCLAGNSIGLS 210
Query: 668 ESKGRLIVL 676
L VL
Sbjct: 211 HHSAWLTVL 219
Score = 38.5 bits (88), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 35/141 (24%), Positives = 51/141 (36%), Gaps = 23/141 (16%)
Query: 362 DAGNYSCNVQSKVSDTGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPEAPKAGDKVRLEC 421
D GNY+C V+++ ++ PH Q P N KT G V C
Sbjct: 84 DKGNYTCIVENEYGSINHTYQLDVVERSPHRPILQAGLPAN--KTV----ALGSNVEFMC 137
Query: 422 VAFGYPVPSYNWTRR----GSPL-PRNAYFENFNR------------ILTIPNVKVEDQG 464
+ P P W + GS + P N + + +L + NV ED G
Sbjct: 138 KVYSDPQPHIQWLKHIEVNGSKIGPDNLPYVQILKTAGVNTTDKEMEVLHLRNVSFEDAG 197
Query: 465 EYICRASNDRSALESSVTISI 485
EY C A N S +++
Sbjct: 198 EYTCLAGNSIGLSHHSAWLTV 218
Score = 38.1 bits (87), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 42/207 (20%), Positives = 80/207 (38%), Gaps = 28/207 (13%)
Query: 400 PNNFPKTFPEAPKAGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYFENFNR-----ILT 454
P K P A V+ +C + G P P+ W + G + + +
Sbjct: 18 PEKMEKKLHAVP-AAKTVKFKCPSSGTPQPTLRWLKNGKEFKPDHRIGGYKVRYATWSII 76
Query: 455 IPNVKVEDQGEYICRASNDRSALESSVTIS-IQAEPNFTIPL----TDKHMDNQADLTWT 509
+ +V D+G Y C N+ ++ + + ++ P+ I +K + +++ +
Sbjct: 77 MDSVVPSDKGNYTCIVENEYGSINHTYQLDVVERSPHRPILQAGLPANKTVALGSNVEFM 136
Query: 510 CEAFGVPDVTYSWFR----NGELLNSETLP---------LEDQDRYFIQDNVLTIRYLNP 556
C+ + P W + NG + + LP + D+ + VL +R ++
Sbjct: 137 CKVYSDPQPHIQWLKHIEVNGSKIGPDNLPYVQILKTAGVNTTDK---EMEVLHLRNVSF 193
Query: 557 ERDPAMYQCRAKNQLKTRYSSAQLRVL 583
E D Y C A N + + SA L VL
Sbjct: 194 E-DAGEYTCLAGNSIGLSHHSAWLTVL 219
Score = 36.2 bits (82), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 27/107 (25%), Positives = 44/107 (41%), Gaps = 11/107 (10%)
Query: 179 DIENPDKIPRGPYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFK--EDYVQD 236
D P+++P PY+ P + L + C + G P P+ W K +++ D
Sbjct: 2 DNTKPNRMPVAPYWT-SPEKMEKKLHAVPAAKTVKFKCPSSGTPQPTLRWLKNGKEFKPD 60
Query: 237 RLVANLIDPLSDKRFTLSGGNLIINDPRQVEDRGSYHCKASNKFGSI 283
+ + T S II D D+G+Y C N++GSI
Sbjct: 61 HRIGGY----KVRYATWS----IIMDSVVPSDKGNYTCIVENEYGSI 99
>pdb|2YD3|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human
Receptor Protein Tyrosine Phosphatase Sigma
Length = 202
Score = 58.9 bits (141), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 48/167 (28%), Positives = 70/167 (41%), Gaps = 9/167 (5%)
Query: 507 TWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQDNVLTIRYLNPERDPAMYQCR 566
++ C+A G P +W + G+ +NS+ + D VL I+ L RD +Y+C
Sbjct: 25 SFVCQATGDPKPRVTWNKKGKKVNSQRFETIEFDES--AGAVLRIQPLRTPRDENVYECV 82
Query: 567 AKNQLKTRYSSAQLRVL---TLKPSFKKRPLESETYAGEGG-NVTIFCNPEAAPKPKFVW 622
A+N + A+L VL L F + + E T+ C P P+ W
Sbjct: 83 AQNSVGEITVHAKLTVLREDQLPSGFPNIDMGPQLKVVERTRTATMLCAASGNPDPEITW 142
Query: 623 KKDGNII---GSGGRRKIFENGNLLISPVSRDDSGIYSCTATNVHGM 666
KD + S GR K +G L I D G Y C ATN G+
Sbjct: 143 FKDFLPVDPSASNGRIKQLRSGALQIESSEETDQGKYECVATNSAGV 189
Score = 45.4 bits (106), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 49/198 (24%), Positives = 76/198 (38%), Gaps = 36/198 (18%)
Query: 587 PSFKKRPLESETYAGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFE-----NG 641
P F K P + GG + C PKP+ W K G + S R + E
Sbjct: 7 PRFIKEP--KDQIGVSGGVASFVCQATGDPKPRVTWNKKGKKVNS-QRFETIEFDESAGA 63
Query: 642 NLLISPV-SRDDSGIYSCTATNVHGMDESKGRLIVLHGPSYYEQLP---------PKITI 691
L I P+ + D +Y C A N G +L VL +QLP P++ +
Sbjct: 64 VLRIQPLRTPRDENVYECVAQNSVGEITVHAKLTVLR----EDQLPSGFPNIDMGPQLKV 119
Query: 692 AAH-RNLQLRCSAHTEELLDVAYIWTHNGVRI----GNMDLNELETPNINIDGGLLEITN 746
R + C+A D W + + + N + +L + G L+I +
Sbjct: 120 VERTRTATMLCAASGNP--DPEITWFKDFLPVDPSASNGRIKQLRS-------GALQIES 170
Query: 747 ASFADAGEYECVVKSTVG 764
+ D G+YECV ++ G
Sbjct: 171 SEETDQGKYECVATNSAG 188
Score = 45.4 bits (106), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 48/191 (25%), Positives = 70/191 (36%), Gaps = 28/191 (14%)
Query: 190 PYFIKQPTDVVFDLSKRSILNDI-TLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSD 248
P FIK+P D + + + + C A G P P W K+ + I+
Sbjct: 7 PRFIKEPKDQI------GVSGGVASFVCQATGDPKPRVTWNKKGKKVNSQRFETIE---- 56
Query: 249 KRFTLSGGNLIINDP-RQVEDRGSYHCKASNKFGSI-------ISESVQLAFGFIGEFNL 300
F S G ++ P R D Y C A N G I + QL GF N+
Sbjct: 57 --FDESAGAVLRIQPLRTPRDENVYECVAQNSVGEITVHAKLTVLREDQLPSGFP---NI 111
Query: 301 KRAPEIG--NQNWGKAMFCDPPTNYPGVNYYWARDYFP-NFVEEDKRVFVSYDGALYFSA 357
P++ + M C N P W +D+ P + + R+ GAL +
Sbjct: 112 DMGPQLKVVERTRTATMLCAASGN-PDPEITWFKDFLPVDPSASNGRIKQLRSGALQIES 170
Query: 358 LEQIDAGNYSC 368
E+ D G Y C
Sbjct: 171 SEETDQGKYEC 181
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 48/204 (23%), Positives = 72/204 (35%), Gaps = 46/204 (22%)
Query: 404 PKTFPEAPK-----AGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYF-----ENFNRIL 453
P F + PK +G C A G P P W ++G + + E+ +L
Sbjct: 6 PPRFIKEPKDQIGVSGGVASFVCQATGDPKPRVTWNKKGKKVNSQRFETIEFDESAGAVL 65
Query: 454 TIPNVKV-EDQGEYICRASNDRSALESSVTISIQAE-------PNFTIPLTDKHMDNQAD 505
I ++ D+ Y C A N + +++ E PN + K ++
Sbjct: 66 RIQPLRTPRDENVYECVAQNSVGEITVHAKLTVLREDQLPSGFPNIDMGPQLKVVERTRT 125
Query: 506 LTWTCEAFGVPDVTYSWFR----------NGEL--LNSETLPLEDQDRYFIQDNVLTIRY 553
T C A G PD +WF+ NG + L S L +E +
Sbjct: 126 ATMLCAASGNPDPEITWFKDFLPVDPSASNGRIKQLRSGALQIESSE------------- 172
Query: 554 LNPERDPAMYQCRAKNQLKTRYSS 577
E D Y+C A N RYSS
Sbjct: 173 ---ETDQGKYECVATNSAGVRYSS 193
Score = 35.4 bits (80), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 32/112 (28%), Positives = 49/112 (43%), Gaps = 17/112 (15%)
Query: 173 TYQYGMDIENPDKIPRG-PYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKE 231
T + + D++P G P P V + ++ + T+ C A G P+P WFK
Sbjct: 91 TVHAKLTVLREDQLPSGFPNIDMGPQLKVVERTRTA-----TMLCAASGNPDPEITWFK- 144
Query: 232 DYVQDRLVANLIDP-LSDKRFT-LSGGNLIINDPRQVEDRGSYHCKASNKFG 281
D++ +DP S+ R L G L I + D+G Y C A+N G
Sbjct: 145 DFLP-------VDPSASNGRIKQLRSGALQIESSEET-DQGKYECVATNSAG 188
>pdb|2A38|A Chain A, Crystal Structure Of The N-Terminus Of Titin
pdb|2A38|B Chain B, Crystal Structure Of The N-Terminus Of Titin
pdb|2A38|C Chain C, Crystal Structure Of The N-Terminus Of Titin
Length = 194
Score = 58.9 bits (141), Expect = 1e-08, Method: Composition-based stats.
Identities = 59/192 (30%), Positives = 88/192 (45%), Gaps = 9/192 (4%)
Query: 489 PNFTIPLTDKHMDNQADLTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQDNV 548
P FT PL + + T+ G P SWFR+G+++++ TLP Q +
Sbjct: 6 PTFTQPLQSVVVLEGSTATFEAHISGFPVPEVSWFRDGQVISTSTLP-GVQISFSDGRAK 64
Query: 549 LTIRYLNPERDPAMYQCRAKNQLKTRYSSAQLRVL--TLKPSFKKRPLESETYAGEGGNV 606
LTI + + + Y +A N S+A+L V T P+F +R L+S T +G V
Sbjct: 65 LTIPAVT-KANSGRYSLKATNGSGQATSTAELLVKAETAPPNFVQR-LQSMT-VRQGSQV 121
Query: 607 TIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGN---LLISPVSRDDSGIYSCTATNV 663
+ P P + +DG I S +I + G+ LLI+ +DSG YS ATN
Sbjct: 122 RLQVRVTGIPTPVVKFYRDGAEIQSSLDFQISQEGDLYSLLIAEAYPEDSGTYSVNATNS 181
Query: 664 HGMDESKGRLIV 675
G S L+V
Sbjct: 182 VGRATSTAELLV 193
Score = 48.5 bits (114), Expect = 2e-05, Method: Composition-based stats.
Identities = 47/179 (26%), Positives = 72/179 (40%), Gaps = 15/179 (8%)
Query: 414 GDKVRLECVAFGYPVPSYNWTRRG-----SPLPR-NAYFENFNRILTIPNVKVEDQGEYI 467
G E G+PVP +W R G S LP F + LTIP V + G Y
Sbjct: 20 GSTATFEAHISGFPVPEVSWFRDGQVISTSTLPGVQISFSDGRAKLTIPAVTKANSGRYS 79
Query: 468 CRASNDRSALESSVTISIQAE---PNFTIPLTDKHMDNQADLTWTCEAFGVPDVTYSWFR 524
+A+N S+ + ++AE PNF L + + + G+P ++R
Sbjct: 80 LKATNGSGQATSTAELLVKAETAPPNFVQRLQSMTVRQGSQVRLQVRVTGIPTPVVKFYR 139
Query: 525 NG-ELLNSETLPLEDQDRYFIQDNVLTIRYLNPERDPAMYQCRAKNQLKTRYSSAQLRV 582
+G E+ +S + + + L I PE D Y A N + S+A+L V
Sbjct: 140 DGAEIQSSLDFQISQEGDLY----SLLIAEAYPE-DSGTYSVNATNSVGRATSTAELLV 193
>pdb|1YA5|A Chain A, Crystal Structure Of The Titin Domains Z1z2 In Complex
With Telethonin
pdb|1YA5|B Chain B, Crystal Structure Of The Titin Domains Z1z2 In Complex
With Telethonin
pdb|2F8V|A Chain A, Structure Of Full Length Telethonin In Complex With The
N-Terminus Of Titin
pdb|2F8V|B Chain B, Structure Of Full Length Telethonin In Complex With The
N-Terminus Of Titin
pdb|2F8V|C Chain C, Structure Of Full Length Telethonin In Complex With The
N-Terminus Of Titin
pdb|2F8V|D Chain D, Structure Of Full Length Telethonin In Complex With The
N-Terminus Of Titin
Length = 201
Score = 58.5 bits (140), Expect = 2e-08, Method: Composition-based stats.
Identities = 59/192 (30%), Positives = 88/192 (45%), Gaps = 9/192 (4%)
Query: 489 PNFTIPLTDKHMDNQADLTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQDNV 548
P FT PL + + T+ G P SWFR+G+++++ TLP Q +
Sbjct: 6 PTFTQPLQSVVVLEGSTATFEAHISGFPVPEVSWFRDGQVISTSTLP-GVQISFSDGRAK 64
Query: 549 LTIRYLNPERDPAMYQCRAKNQLKTRYSSAQLRVL--TLKPSFKKRPLESETYAGEGGNV 606
LTI + + + Y +A N S+A+L V T P+F +R L+S T +G V
Sbjct: 65 LTIPAVT-KANSGRYSLKATNGSGQATSTAELLVKAETAPPNFVQR-LQSMT-VRQGSQV 121
Query: 607 TIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGN---LLISPVSRDDSGIYSCTATNV 663
+ P P + +DG I S +I + G+ LLI+ +DSG YS ATN
Sbjct: 122 RLQVRVTGIPTPVVKFYRDGAEIQSSLDFQISQEGDLYSLLIAEAYPEDSGTYSVNATNS 181
Query: 664 HGMDESKGRLIV 675
G S L+V
Sbjct: 182 VGRATSTAELLV 193
Score = 48.9 bits (115), Expect = 1e-05, Method: Composition-based stats.
Identities = 47/179 (26%), Positives = 72/179 (40%), Gaps = 15/179 (8%)
Query: 414 GDKVRLECVAFGYPVPSYNWTRRG-----SPLPR-NAYFENFNRILTIPNVKVEDQGEYI 467
G E G+PVP +W R G S LP F + LTIP V + G Y
Sbjct: 20 GSTATFEAHISGFPVPEVSWFRDGQVISTSTLPGVQISFSDGRAKLTIPAVTKANSGRYS 79
Query: 468 CRASNDRSALESSVTISIQAE---PNFTIPLTDKHMDNQADLTWTCEAFGVPDVTYSWFR 524
+A+N S+ + ++AE PNF L + + + G+P ++R
Sbjct: 80 LKATNGSGQATSTAELLVKAETAPPNFVQRLQSMTVRQGSQVRLQVRVTGIPTPVVKFYR 139
Query: 525 NG-ELLNSETLPLEDQDRYFIQDNVLTIRYLNPERDPAMYQCRAKNQLKTRYSSAQLRV 582
+G E+ +S + + + L I PE D Y A N + S+A+L V
Sbjct: 140 DGAEIQSSLDFQISQEGDLY----SLLIAEAYPE-DSGTYSVNATNSVGRATSTAELLV 193
Score = 30.4 bits (67), Expect = 4.5, Method: Composition-based stats.
Identities = 24/94 (25%), Positives = 37/94 (39%), Gaps = 5/94 (5%)
Query: 400 PNNFPKTFPEAP-KAGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYFENFNR----ILT 454
P NF + + G +VRL+ G P P + R G+ + + F+ L
Sbjct: 103 PPNFVQRLQSMTVRQGSQVRLQVRVTGIPTPVVKFYRDGAEIQSSLDFQISQEGDLYSLL 162
Query: 455 IPNVKVEDQGEYICRASNDRSALESSVTISIQAE 488
I ED G Y A+N S+ + +Q E
Sbjct: 163 IAEAYPEDSGTYSVNATNSVGRATSTAELLVQGE 196
>pdb|2YD2|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human
Receptor Protein Tyrosine Phosphatase Sigma
Length = 214
Score = 58.5 bits (140), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 48/167 (28%), Positives = 70/167 (41%), Gaps = 9/167 (5%)
Query: 507 TWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQDNVLTIRYLNPERDPAMYQCR 566
++ C+A G P +W + G+ +NS+ + D VL I+ L RD +Y+C
Sbjct: 25 SFVCQATGDPKPRVTWNKKGKKVNSQRFETIEFDES--AGAVLRIQPLRTPRDENVYECV 82
Query: 567 AKNQLKTRYSSAQLRVL---TLKPSFKKRPLESETYAGEGG-NVTIFCNPEAAPKPKFVW 622
A+N + A+L VL L F + + E T+ C P P+ W
Sbjct: 83 AQNSVGEITVHAKLTVLREDQLPSGFPNIDMGPQLKVVERTRTATMLCAASGNPDPEITW 142
Query: 623 KKDGNII---GSGGRRKIFENGNLLISPVSRDDSGIYSCTATNVHGM 666
KD + S GR K +G L I D G Y C ATN G+
Sbjct: 143 FKDFLPVDPSASNGRIKQLRSGALQIESSEETDQGKYECVATNSAGV 189
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 48/191 (25%), Positives = 70/191 (36%), Gaps = 28/191 (14%)
Query: 190 PYFIKQPTDVVFDLSKRSILNDI-TLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSD 248
P FIK+P D + + + + C A G P P W K+ + I+
Sbjct: 7 PRFIKEPKDQI------GVSGGVASFVCQATGDPKPRVTWNKKGKKVNSQRFETIE---- 56
Query: 249 KRFTLSGGNLIINDP-RQVEDRGSYHCKASNKFGSI-------ISESVQLAFGFIGEFNL 300
F S G ++ P R D Y C A N G I + QL GF N+
Sbjct: 57 --FDESAGAVLRIQPLRTPRDENVYECVAQNSVGEITVHAKLTVLREDQLPSGFP---NI 111
Query: 301 KRAPEIG--NQNWGKAMFCDPPTNYPGVNYYWARDYFP-NFVEEDKRVFVSYDGALYFSA 357
P++ + M C N P W +D+ P + + R+ GAL +
Sbjct: 112 DMGPQLKVVERTRTATMLCAASGN-PDPEITWFKDFLPVDPSASNGRIKQLRSGALQIES 170
Query: 358 LEQIDAGNYSC 368
E+ D G Y C
Sbjct: 171 SEETDQGKYEC 181
Score = 45.1 bits (105), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 49/198 (24%), Positives = 76/198 (38%), Gaps = 36/198 (18%)
Query: 587 PSFKKRPLESETYAGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFE-----NG 641
P F K P + GG + C PKP+ W K G + S R + E
Sbjct: 7 PRFIKEP--KDQIGVSGGVASFVCQATGDPKPRVTWNKKGKKVNS-QRFETIEFDESAGA 63
Query: 642 NLLISPV-SRDDSGIYSCTATNVHGMDESKGRLIVLHGPSYYEQLP---------PKITI 691
L I P+ + D +Y C A N G +L VL +QLP P++ +
Sbjct: 64 VLRIQPLRTPRDENVYECVAQNSVGEITVHAKLTVLR----EDQLPSGFPNIDMGPQLKV 119
Query: 692 AAH-RNLQLRCSAHTEELLDVAYIWTHNGVRI----GNMDLNELETPNINIDGGLLEITN 746
R + C+A D W + + + N + +L + G L+I +
Sbjct: 120 VERTRTATMLCAASGNP--DPEITWFKDFLPVDPSASNGRIKQLRS-------GALQIES 170
Query: 747 ASFADAGEYECVVKSTVG 764
+ D G+YECV ++ G
Sbjct: 171 SEETDQGKYECVATNSAG 188
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 48/204 (23%), Positives = 72/204 (35%), Gaps = 46/204 (22%)
Query: 404 PKTFPEAPK-----AGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYF-----ENFNRIL 453
P F + PK +G C A G P P W ++G + + E+ +L
Sbjct: 6 PPRFIKEPKDQIGVSGGVASFVCQATGDPKPRVTWNKKGKKVNSQRFETIEFDESAGAVL 65
Query: 454 TIPNVKV-EDQGEYICRASNDRSALESSVTISIQAE-------PNFTIPLTDKHMDNQAD 505
I ++ D+ Y C A N + +++ E PN + K ++
Sbjct: 66 RIQPLRTPRDENVYECVAQNSVGEITVHAKLTVLREDQLPSGFPNIDMGPQLKVVERTRT 125
Query: 506 LTWTCEAFGVPDVTYSWFR----------NGEL--LNSETLPLEDQDRYFIQDNVLTIRY 553
T C A G PD +WF+ NG + L S L +E +
Sbjct: 126 ATMLCAASGNPDPEITWFKDFLPVDPSASNGRIKQLRSGALQIESSE------------- 172
Query: 554 LNPERDPAMYQCRAKNQLKTRYSS 577
E D Y+C A N RYSS
Sbjct: 173 ---ETDQGKYECVATNSAGVRYSS 193
Score = 35.4 bits (80), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 32/112 (28%), Positives = 49/112 (43%), Gaps = 17/112 (15%)
Query: 173 TYQYGMDIENPDKIPRG-PYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKE 231
T + + D++P G P P V + ++ + T+ C A G P+P WFK
Sbjct: 91 TVHAKLTVLREDQLPSGFPNIDMGPQLKVVERTRTA-----TMLCAASGNPDPEITWFK- 144
Query: 232 DYVQDRLVANLIDP-LSDKRFT-LSGGNLIINDPRQVEDRGSYHCKASNKFG 281
D++ +DP S+ R L G L I + D+G Y C A+N G
Sbjct: 145 DFLP-------VDPSASNGRIKQLRSGALQIESSEET-DQGKYECVATNSAG 188
>pdb|1EVT|C Chain C, Crystal Structure Of Fgf1 In Complex With The
Extracellular Ligand Binding Domain Of Fgf Receptor 1
(Fgfr1)
pdb|1EVT|D Chain D, Crystal Structure Of Fgf1 In Complex With The
Extracellular Ligand Binding Domain Of Fgf Receptor 1
(Fgfr1)
Length = 225
Score = 58.2 bits (139), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 48/189 (25%), Positives = 82/189 (43%), Gaps = 19/189 (10%)
Query: 594 LESETYAGEGGNVTIF-CNPEAAPKPKFVWKKDGNIIGS----GGRRKIFENGNLLISPV 648
+E + +A F C P P W K+G GG + + ++++ V
Sbjct: 21 MEKKLHAVPAAKTVKFKCPSSGTPNPTLRWLKNGKEFKPDHRIGGYKVRYATWSIIMDSV 80
Query: 649 SRDDSGIYSCTATNVHGMDESKGRLIVL----HGPSYYEQLPPKITIAAHRNLQLRCSAH 704
D G Y+C N +G +L V+ H P LP T+A N++ C +
Sbjct: 81 VPSDKGNYTCIVENEYGSINHTYQLDVVERSPHRPILQAGLPANKTVALGSNVEFMCKVY 140
Query: 705 TEELLDVAYIWTH---NGVRIGNMDL---NELETPNINI---DGGLLEITNASFADAGEY 755
++ + ++ H NG +IG +L L+T +N + +L + N SF DAGEY
Sbjct: 141 SDPQPHIQWL-KHIEVNGSKIGPDNLPYVQILKTAGVNTTDKEMEVLHLRNVSFEDAGEY 199
Query: 756 ECVVKSTVG 764
C+ +++G
Sbjct: 200 TCLAGNSIG 208
Score = 45.4 bits (106), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 47/189 (24%), Positives = 72/189 (38%), Gaps = 29/189 (15%)
Query: 510 CEAFGVPDVTYSWFRNGELLNSETLPLEDQDRY----FIQDNVLTIRYLNPERDPAMYQC 565
C + G P+ T W +NG+ + + RY I D+V+ D Y C
Sbjct: 38 CPSSGTPNPTLRWLKNGKEFKPDHRIGGYKVRYATWSIIMDSVV-------PSDKGNYTC 90
Query: 566 RAKNQLKTRYSSAQLRVLTLKPS--FKKRPLESETYAGEGGNVTIFCNPEAAPKPKFVWK 623
+N+ + + QL V+ P + L + G NV C + P+P W
Sbjct: 91 IVENEYGSINHTYQLDVVERSPHRPILQAGLPANKTVALGSNVEFMCKVYSDPQPHIQWL 150
Query: 624 K----DGNIIG------------SGGRRKIFENGNLLISPVSRDDSGIYSCTATNVHGMD 667
K +G+ IG +G E L + VS +D+G Y+C A N G+
Sbjct: 151 KHIEVNGSKIGPDNLPYVQILKTAGVNTTDKEMEVLHLRNVSFEDAGEYTCLAGNSIGLS 210
Query: 668 ESKGRLIVL 676
L VL
Sbjct: 211 HHSAWLTVL 219
Score = 38.5 bits (88), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 35/141 (24%), Positives = 51/141 (36%), Gaps = 23/141 (16%)
Query: 362 DAGNYSCNVQSKVSDTGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPEAPKAGDKVRLEC 421
D GNY+C V+++ ++ PH Q P N KT G V C
Sbjct: 84 DKGNYTCIVENEYGSINHTYQLDVVERSPHRPILQAGLPAN--KTV----ALGSNVEFMC 137
Query: 422 VAFGYPVPSYNWTRR----GSPL-PRNAYFENFNR------------ILTIPNVKVEDQG 464
+ P P W + GS + P N + + +L + NV ED G
Sbjct: 138 KVYSDPQPHIQWLKHIEVNGSKIGPDNLPYVQILKTAGVNTTDKEMEVLHLRNVSFEDAG 197
Query: 465 EYICRASNDRSALESSVTISI 485
EY C A N S +++
Sbjct: 198 EYTCLAGNSIGLSHHSAWLTV 218
Score = 38.5 bits (88), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 28/107 (26%), Positives = 45/107 (42%), Gaps = 11/107 (10%)
Query: 179 DIENPDKIPRGPYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFK--EDYVQD 236
D P+++P PY+ P + L + C + G PNP+ W K +++ D
Sbjct: 2 DNTKPNRMPVAPYWT-SPEKMEKKLHAVPAAKTVKFKCPSSGTPNPTLRWLKNGKEFKPD 60
Query: 237 RLVANLIDPLSDKRFTLSGGNLIINDPRQVEDRGSYHCKASNKFGSI 283
+ + T S II D D+G+Y C N++GSI
Sbjct: 61 HRIGGY----KVRYATWS----IIMDSVVPSDKGNYTCIVENEYGSI 99
Score = 37.7 bits (86), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 42/207 (20%), Positives = 80/207 (38%), Gaps = 28/207 (13%)
Query: 400 PNNFPKTFPEAPKAGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYFENFNR-----ILT 454
P K P A V+ +C + G P P+ W + G + + +
Sbjct: 18 PEKMEKKLHAVP-AAKTVKFKCPSSGTPNPTLRWLKNGKEFKPDHRIGGYKVRYATWSII 76
Query: 455 IPNVKVEDQGEYICRASNDRSALESSVTIS-IQAEPNFTIPL----TDKHMDNQADLTWT 509
+ +V D+G Y C N+ ++ + + ++ P+ I +K + +++ +
Sbjct: 77 MDSVVPSDKGNYTCIVENEYGSINHTYQLDVVERSPHRPILQAGLPANKTVALGSNVEFM 136
Query: 510 CEAFGVPDVTYSWFR----NGELLNSETLP---------LEDQDRYFIQDNVLTIRYLNP 556
C+ + P W + NG + + LP + D+ + VL +R ++
Sbjct: 137 CKVYSDPQPHIQWLKHIEVNGSKIGPDNLPYVQILKTAGVNTTDK---EMEVLHLRNVSF 193
Query: 557 ERDPAMYQCRAKNQLKTRYSSAQLRVL 583
E D Y C A N + + SA L VL
Sbjct: 194 E-DAGEYTCLAGNSIGLSHHSAWLTVL 219
>pdb|2NZI|A Chain A, Crystal Structure Of Domains A168-A170 From Titin
pdb|2NZI|B Chain B, Crystal Structure Of Domains A168-A170 From Titin
Length = 305
Score = 57.0 bits (136), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 53/202 (26%), Positives = 87/202 (43%), Gaps = 18/202 (8%)
Query: 489 PNFTIPLTDKHMDNQADLTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQD-- 546
P+F L + ++ Q++ T C+ G P W+R G+ + ++ L +Y IQ+
Sbjct: 5 PHFKEELRNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADGL------KYRIQEFK 58
Query: 547 ---NVLTIRYLNPERDPAMYQCRAKNQLKTRYSSAQLRVLTLKPSFKKRPLE--SETYAG 601
+ L I + + D +YQ RA NQ + +A L V + LE +A
Sbjct: 59 GGYHQLIIASVTDD-DATVYQVRATNQGGSVSGTASLEVEVPAKIHLPKTLEGMGAVHAL 117
Query: 602 EGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGNL--LISP--VSRDDSGIYS 657
G V+I P P W+K ++I + G ++ + L+ P V R D+G Y
Sbjct: 118 RGEVVSIKIPFSGKPDPVITWQKGQDLIDNNGHYQVIVTRSFTSLVFPNGVERKDAGFYV 177
Query: 658 CTATNVHGMDESKGRLIVLHGP 679
A N G+D+ L V P
Sbjct: 178 VCAKNRFGIDQKTVELDVADVP 199
Score = 49.3 bits (116), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 76/302 (25%), Positives = 109/302 (36%), Gaps = 49/302 (16%)
Query: 605 NVTIFCNPEAAPKPKFVWKKDGN-IIGSGGRRKI--FENG--NLLISPVSRDDSGIYSCT 659
N T+ C PKP W + G II G + +I F+ G L+I+ V+ DD+ +Y
Sbjct: 21 NATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGGYHQLIIASVTDDDATVYQVR 80
Query: 660 ATNVHGMDESKGRLIV-----LHGPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYI 714
ATN G L V +H P E + + A R + D
Sbjct: 81 ATNQGGSVSGTASLEVEVPAKIHLPKTLEGMG---AVHALRGEVVSIKIPFSGKPDPVIT 137
Query: 715 WTHNGVRIGNMDLNELETPNINIDGGLLEITNASFA-----------DAGEYECVVKSTV 763
W DL I+ +G I SF DAG Y K+
Sbjct: 138 WQKG------QDL-------IDNNGHYQVIVTRSFTSLVFPNGVERKDAGFYVVCAKNRF 184
Query: 764 GKISTKTTXXXXXXXXXXXXXXXXXXHKTSATIQWTDGATNG-RPITHYKIIARTNWNST 822
G + S + WT+ A++G IT+Y +
Sbjct: 185 GIDQKTVELDVADVPDPPRGVKVSDVSRDSVNLTWTEPASDGGSKITNYIVEKCATTAER 244
Query: 823 WFNVSEHVIGKEVDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPSPQYNTPA 882
W V + +E RYT + N L ++Y+F+VIA N+ G +PS PS T
Sbjct: 245 WLRVGQ---ARET-RYT------VIN-LFGKTSYQFRVIAENKFGLSKPSEPSEPTITKE 293
Query: 883 DK 884
DK
Sbjct: 294 DK 295
Score = 36.6 bits (83), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 27/124 (21%), Positives = 50/124 (40%), Gaps = 11/124 (8%)
Query: 419 LECVAFGYPVPSYNWTRRGSPLP------RNAYFENFNRILTIPNVKVEDQGEYICRASN 472
L C G+P P W R+G + R F+ L I +V +D Y RA+N
Sbjct: 24 LVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGGYHQLIIASVTDDDATVYQVRATN 83
Query: 473 DRSALESSVTISIQAEPNFTIPLTDKHMDNQADLTWTCEAF-----GVPDVTYSWFRNGE 527
++ + ++ ++ +P T + M L + G PD +W + +
Sbjct: 84 QGGSVSGTASLEVEVPAKIHLPKTLEGMGAVHALRGEVVSIKIPFSGKPDPVITWQKGQD 143
Query: 528 LLNS 531
L+++
Sbjct: 144 LIDN 147
>pdb|2JLL|A Chain A, Crystal Structure Of Ncam2 Igiv-Fn3ii
Length = 389
Score = 57.0 bits (136), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 91/389 (23%), Positives = 141/389 (36%), Gaps = 48/389 (12%)
Query: 602 EGGNVTIFCNPEAAPKPKFVWKK--DGNIIGSG-----GRRKI---FENGNLLISPVSRD 651
E G VT+ C+ E P P+ WK+ DG G GR ++ + +L I V
Sbjct: 14 ENGQVTLVCDAEGEPIPEITWKRAVDGFTFTEGDKSLDGRIEVKGQHGSSSLHIKDVKLS 73
Query: 652 DSGIYSCTATNVHGMDESKGRLIVLHGPS-------YYEQLPPKITIAAHRNLQLRCSAH 704
DSG Y C A + G + L + + P YY I I+ S H
Sbjct: 74 DSGRYDCEAASRIGGHQKSMYLDIEYAPKFISNQTIYYSWEGNPINISCDVKSNPPASIH 133
Query: 705 TEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEITNASFADAGEYECVVKSTVG 764
W + + + + L+T + +LEI S D G Y C + +G
Sbjct: 134 ----------WRRDKLVLPAKNTTNLKTYSTG-RKMILEIAPTSDNDFGRYNCTATNHIG 182
Query: 765 KISTKTTXXXXXXXXXXXXXXXXXXHKTSATIQWTD-GATNGRPITHYKIIARTNWNSTW 823
+ +T+A + + + G PI HY++ + + W
Sbjct: 183 TRFQEYILALADVPSSPYGVKIIELSQTTAKVSFNKPDSHGGVPIHHYQVDVKEVASEIW 242
Query: 824 FNVSEHVIGKEVDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPSPQYNTPAD 883
V H G + + N L P +TYE +V A N G G+ S P
Sbjct: 243 KIVRSH----------GVQTMVVLNNLEPNTTYEIRVAAVNGKGQGDYSKIEIFQTLPVR 292
Query: 884 KPYQAPSRXXXXXXXXXDLSISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETLKEYGN 943
+P LSI+ ++ AP + Y + +R K D E Q K GN
Sbjct: 293 EPSPPSIHGQPSSGKSFKLSIT----KQDDGGAPILEYIVKYRSK-DKEDQWLEKKVQGN 347
Query: 944 VGIAVVRIPSEFYYTE-YEVKVQAINDVG 971
++ +T YEV++ A N +G
Sbjct: 348 KDHIILE---HLQWTMGYEVQITAANRLG 373
Score = 43.5 bits (101), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 42/174 (24%), Positives = 67/174 (38%), Gaps = 19/174 (10%)
Query: 416 KVRLECVAFGYPVPSYNWTRRGSPLPRNAYFENFN-RI----------LTIPNVKVEDQG 464
+V L C A G P+P W R ++ + RI L I +VK+ D G
Sbjct: 17 QVTLVCDAEGEPIPEITWKRAVDGFTFTEGDKSLDGRIEVKGQHGSSSLHIKDVKLSDSG 76
Query: 465 EYICRASNDRSALESSVTISIQAEPNFTIPLTDKHMDNQADLTWTCEAFGVPDVTYSWFR 524
Y C A++ + S+ + I+ P F T + + +C+ P + W R
Sbjct: 77 RYDCEAASRIGGHQKSMYLDIEYAPKFISNQTIYYSWEGNPINISCDVKSNPPASIHWRR 136
Query: 525 NGELL---NSETLPLEDQDRYFIQDNVLTIRYLNPERDPAMYQCRAKNQLKTRY 575
+ +L N+ L R I + T + D Y C A N + TR+
Sbjct: 137 DKLVLPAKNTTNLKTYSTGRKMILEIAPT-----SDNDFGRYNCTATNHIGTRF 185
Score = 30.4 bits (67), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 36/133 (27%), Positives = 55/133 (41%), Gaps = 24/133 (18%)
Query: 212 ITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLSG----GNLIINDPRQVE 267
+TL C A G P P W + D D D R + G +L I D + +
Sbjct: 18 VTLVCDAEGEPIPEITWKR---AVDGFTFTEGDKSLDGRIEVKGQHGSSSLHIKDVK-LS 73
Query: 268 DRGSYHCKASNKFGSIISESVQLAFGFIGEFNLKRAPEIGNQ----NWGK---AMFCDPP 320
D G Y C+A+++ G +S+ L + +F I NQ +W + CD
Sbjct: 74 DSGRYDCEAASRIGG-HQKSMYLDIEYAPKF-------ISNQTIYYSWEGNPINISCDVK 125
Query: 321 TNYPGVNYYWARD 333
+N P + +W RD
Sbjct: 126 SN-PPASIHWRRD 137
>pdb|2ILL|A Chain A, Anomalous Substructure Of Titin-A168169
Length = 195
Score = 57.0 bits (136), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 52/198 (26%), Positives = 86/198 (43%), Gaps = 18/198 (9%)
Query: 489 PNFTIPLTDKHMDNQADLTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQD-- 546
P+F L + ++ Q++ T C+ G P W+R G+ + ++ L +Y IQ+
Sbjct: 3 PHFKEELRNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADGL------KYRIQEFK 56
Query: 547 ---NVLTIRYLNPERDPAMYQCRAKNQLKTRYSSAQLRVLTLKPSFKKRPLE--SETYAG 601
+ L I + + D +YQ RA NQ + +A L V + LE +A
Sbjct: 57 GGYHQLIIASVTDD-DATVYQVRATNQGGSVSGTASLEVEVPAKIHLPKTLEGMGAVHAL 115
Query: 602 EGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGNL--LISP--VSRDDSGIYS 657
G V+I P P W+K ++I + G ++ + L+ P V R D+G Y
Sbjct: 116 RGEVVSIKIPFSGKPDPVITWQKGQDLIDNNGHYQVIVTRSFTSLVFPNGVERKDAGFYV 175
Query: 658 CTATNVHGMDESKGRLIV 675
A N G+D+ L V
Sbjct: 176 VCAKNRFGIDQKTVELDV 193
Score = 37.4 bits (85), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 34/177 (19%), Positives = 68/177 (38%), Gaps = 18/177 (10%)
Query: 419 LECVAFGYPVPSYNWTRRGSPLPRNAY------FENFNRILTIPNVKVEDQGEYICRASN 472
L C G+P P W R+G + + F+ L I +V +D Y RA+N
Sbjct: 22 LVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGGYHQLIIASVTDDDATVYQVRATN 81
Query: 473 DRSALESSVTISIQAEPNFTIPLTDKHMDNQADLTWTCEAF-----GVPDVTYSWFRNGE 527
++ + ++ ++ +P T + M L + G PD +W + +
Sbjct: 82 QGGSVSGTASLEVEVPAKIHLPKTLEGMGAVHALRGEVVSIKIPFSGKPDPVITWQKGQD 141
Query: 528 LLNSETLPLEDQDRYFIQDNVLTIRYLN--PERDPAMYQCRAKNQLKTRYSSAQLRV 582
L+++ + + + ++ + N +D Y AKN+ + +L V
Sbjct: 142 LIDN-----NGHYQVIVTRSFTSLVFPNGVERKDAGFYVVCAKNRFGIDQKTVELDV 193
>pdb|2J8H|A Chain A, Structure Of The Immunoglobulin Tandem Repeat A168-A169 Of
Titin
pdb|2J8O|A Chain A, Structure Of The Immunoglobulin Tandem Repeat Of Titin
A168- A169
pdb|2J8O|B Chain B, Structure Of The Immunoglobulin Tandem Repeat Of Titin
A168- A169
Length = 197
Score = 56.6 bits (135), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 52/198 (26%), Positives = 86/198 (43%), Gaps = 18/198 (9%)
Query: 489 PNFTIPLTDKHMDNQADLTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQD-- 546
P+F L + ++ Q++ T C+ G P W+R G+ + ++ L +Y IQ+
Sbjct: 5 PHFKEELRNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADGL------KYRIQEFK 58
Query: 547 ---NVLTIRYLNPERDPAMYQCRAKNQLKTRYSSAQLRVLTLKPSFKKRPLE--SETYAG 601
+ L I + + D +YQ RA NQ + +A L V + LE +A
Sbjct: 59 GGYHQLIIASVTDD-DATVYQVRATNQGGSVSGTASLEVEVPAKIHLPKTLEGMGAVHAL 117
Query: 602 EGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGNL--LISP--VSRDDSGIYS 657
G V+I P P W+K ++I + G ++ + L+ P V R D+G Y
Sbjct: 118 RGEVVSIKIPFSGKPDPVITWQKGQDLIDNNGHYQVIVTRSFTSLVFPNGVERKDAGFYV 177
Query: 658 CTATNVHGMDESKGRLIV 675
A N G+D+ L V
Sbjct: 178 VCAKNRFGIDQKTVELDV 195
Score = 37.4 bits (85), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 34/177 (19%), Positives = 68/177 (38%), Gaps = 18/177 (10%)
Query: 419 LECVAFGYPVPSYNWTRRGSPLPRNAY------FENFNRILTIPNVKVEDQGEYICRASN 472
L C G+P P W R+G + + F+ L I +V +D Y RA+N
Sbjct: 24 LVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGGYHQLIIASVTDDDATVYQVRATN 83
Query: 473 DRSALESSVTISIQAEPNFTIPLTDKHMDNQADLTWTCEAF-----GVPDVTYSWFRNGE 527
++ + ++ ++ +P T + M L + G PD +W + +
Sbjct: 84 QGGSVSGTASLEVEVPAKIHLPKTLEGMGAVHALRGEVVSIKIPFSGKPDPVITWQKGQD 143
Query: 528 LLNSETLPLEDQDRYFIQDNVLTIRYLN--PERDPAMYQCRAKNQLKTRYSSAQLRV 582
L+++ + + + ++ + N +D Y AKN+ + +L V
Sbjct: 144 LIDN-----NGHYQVIVTRSFTSLVFPNGVERKDAGFYVVCAKNRFGIDQKTVELDV 195
>pdb|3K0W|A Chain A, Crystal Structure Of The Tandem Ig-Like C2-Type 2 Domains
Of The Human Mucosa-Associated Lymphoid Tissue Lymphoma
Translocation Protein 1
Length = 218
Score = 55.8 bits (133), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 53/207 (25%), Positives = 78/207 (37%), Gaps = 45/207 (21%)
Query: 316 FCDPPTNYPGVNYYWARDYFPNFVEEDKRVFVSYDGALYFSALEQIDAGNYSCNVQSKVS 375
C T +P V Y W + +K + L F+A+ DAG Y C V + +
Sbjct: 38 LCCRATGHPFVQYQWFK--------MNKEIPNGNTSELIFNAVHVKDAGFYVCRVNNNFT 89
Query: 376 DTGRNGPFFPLKVFPHSNFQQLK---FPNNFPKTF-------------PEAPKA--GDKV 417
F S + QL P +F ++ P + K G +
Sbjct: 90 -------------FEFSQWSQLDVCDIPESFQRSVDGVSESKLQICVEPTSQKLMPGSTL 136
Query: 418 RLECVAFGYPVPSYNWTRRGSPLPRNAYFENFNRILTIPNVKVEDQGEYICRASNDRSAL 477
L+CVA G P+P Y W + PL ++ +P V +E QG Y C NDR +
Sbjct: 137 VLQCVAVGSPIPHYQWFKNELPLTHET-----KKLYMVPYVDLEHQGTYWCHVYNDRDSQ 191
Query: 478 ES-SVTISIQAEPNFTIPLTDKHMDNQ 503
+S V I I N P + +Q
Sbjct: 192 DSKKVEIIIDELNNLGHPDNKEQTTDQ 218
Score = 49.7 bits (117), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 38/144 (26%), Positives = 58/144 (40%), Gaps = 21/144 (14%)
Query: 409 EAPKAGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYFENFNRILTIPNVKVEDQGEYIC 468
+A AG V+L C A G+P Y W + +P E L V V+D G Y+C
Sbjct: 28 KAVLAGQFVKLCCRATGHPFVQYQWFKMNKEIPNGNTSE-----LIFNAVHVKDAGFYVC 82
Query: 469 RASNDRS----------------ALESSVTISIQAEPNFTIPLTDKHMDNQADLTWTCEA 512
R +N+ + + + SV +++ + T + + + L C A
Sbjct: 83 RVNNNFTFEFSQWSQLDVCDIPESFQRSVDGVSESKLQICVEPTSQKLMPGSTLVLQCVA 142
Query: 513 FGVPDVTYSWFRNGELLNSETLPL 536
G P Y WF+N L ET L
Sbjct: 143 VGSPIPHYQWFKNELPLTHETKKL 166
Score = 32.3 bits (72), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 46/204 (22%), Positives = 73/204 (35%), Gaps = 53/204 (25%)
Query: 186 IPRGPYFIKQPTDVVFDLSKRSILND--ITLSCYAGGYPNPSYEWFKEDYVQDRLVANLI 243
+PRG P +++L + L C A G+P Y+WFK
Sbjct: 15 VPRGSKITVNP-------ESKAVLAGQFVKLCCRATGHPFVQYQWFK------------- 54
Query: 244 DPLSDKRFTLSGGNLIINDPRQVEDRGSYHCKASNKFGSIISESVQLAFGFIGEFNLKRA 303
+K + +I + V+D G Y C+ +N F S+ QL I E + +R+
Sbjct: 55 ---MNKEIPNGNTSELIFNAVHVKDAGFYVCRVNNNFTFEFSQWSQLDVCDIPE-SFQRS 110
Query: 304 PEIGNQNWGKAMFCDPPTN---YPGV--------------NYYWARDYFPNFVEEDKRVF 346
+ + K C PT+ PG +Y W ++ P E K
Sbjct: 111 --VDGVSESKLQICVEPTSQKLMPGSTLVLQCVAVGSPIPHYQWFKNELPLTHETKKLYM 168
Query: 347 VSYDGALYFSALEQIDAGNYSCNV 370
V Y ++ G Y C+V
Sbjct: 169 VPY--------VDLEHQGTYWCHV 184
>pdb|2YD6|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human
Receptor Protein Tyrosine Phosphatase Delta
pdb|2YD7|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human
Receptor Protein Tyrosine Phosphatase Delta
pdb|2YD7|B Chain B, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human
Receptor Protein Tyrosine Phosphatase Delta
Length = 212
Score = 55.5 bits (132), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 50/192 (26%), Positives = 84/192 (43%), Gaps = 21/192 (10%)
Query: 587 PSFKKRPLESETYAGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFE----NGN 642
P F + P++ +G G + C P+PK VW K G + S R ++ E +G+
Sbjct: 7 PRFTRTPVDQTGVSG--GVASFICQATGDPRPKIVWNKKGKKV-SNQRFEVIEFDDGSGS 63
Query: 643 LL-ISPV-SRDDSGIYSCTATNVHGMDESKGRLIVLHGPSYYEQLP-----PKITIAAH- 694
+L I P+ + D IY C A+N G RL VL P P++ +
Sbjct: 64 VLRIQPLRTPRDEAIYECVASNNVGEISVSTRLTVLREDQIPRGFPTIDMGPQLKVVERT 123
Query: 695 RNLQLRCSAHTEELLDVAYIWTHNGVRIGNMD--LNELETPNINIDGGLLEITNASFADA 752
R + C+A ++ + V N + + +L + +I G L+I + +D
Sbjct: 124 RTATMLCAASGNPDPEITWFKDFLPVDTSNNNGRIKQLRSESI----GALQIEQSEESDQ 179
Query: 753 GEYECVVKSTVG 764
G+YECV ++ G
Sbjct: 180 GKYECVATNSAG 191
Score = 50.8 bits (120), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 50/193 (25%), Positives = 78/193 (40%), Gaps = 24/193 (12%)
Query: 489 PNFTIPLTDKHMDNQADLTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQDNV 548
P FT D+ + ++ C+A G P W + G+ ++++ + + D +V
Sbjct: 7 PRFTRTPVDQTGVSGGVASFICQATGDPRPKIVWNKKGKKVSNQRFEVIEFDDG--SGSV 64
Query: 549 LTIRYLNPERDPAMYQCRAKNQLKTRYSSAQLRVL----------TLKPSFKKRPLESET 598
L I+ L RD A+Y+C A N + S +L VL T+ + + +E
Sbjct: 65 LRIQPLRTPRDEAIYECVASNNVGEISVSTRLTVLREDQIPRGFPTIDMGPQLKVVERTR 124
Query: 599 YAGEGGNVTIFCNPEAAPKPKFVWKKD---GNIIGSGGRRKIFEN---GNLLISPVSRDD 652
A T+ C P P+ W KD + + GR K + G L I D
Sbjct: 125 TA------TMLCAASGNPDPEITWFKDFLPVDTSNNNGRIKQLRSESIGALQIEQSEESD 178
Query: 653 SGIYSCTATNVHG 665
G Y C ATN G
Sbjct: 179 QGKYECVATNSAG 191
Score = 44.3 bits (103), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 42/172 (24%), Positives = 71/172 (41%), Gaps = 18/172 (10%)
Query: 421 CVAFGYPVPSYNWTRRGSPLPRNAYFE------NFNRILTIPNVKV-EDQGEYICRASND 473
C A G P P W ++G + N FE +L I ++ D+ Y C ASN+
Sbjct: 28 CQATGDPRPKIVWNKKGKKV-SNQRFEVIEFDDGSGSVLRIQPLRTPRDEAIYECVASNN 86
Query: 474 RSALESSVTISIQAE-------PNFTIPLTDKHMDNQADLTWTCEAFGVPDVTYSWFRNG 526
+ S +++ E P + K ++ T C A G PD +WF+
Sbjct: 87 VGEISVSTRLTVLREDQIPRGFPTIDMGPQLKVVERTRTATMLCAASGNPDPEITWFK-- 144
Query: 527 ELLNSETLPLEDQDRYFIQDNVLTIRY-LNPERDPAMYQCRAKNQLKTRYSS 577
+ L +T + + +++ ++ + E D Y+C A N TRYS+
Sbjct: 145 DFLPVDTSNNNGRIKQLRSESIGALQIEQSEESDQGKYECVATNSAGTRYSA 196
Score = 40.0 bits (92), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 45/172 (26%), Positives = 60/172 (34%), Gaps = 34/172 (19%)
Query: 216 CYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTL------SGGNLIINDPRQVEDR 269
C A G P P W K+ +S++RF + SG L I R D
Sbjct: 28 CQATGDPRPKIVWNKKG-----------KKVSNQRFEVIEFDDGSGSVLRIQPLRTPRDE 76
Query: 270 GSYHCKASNKFGSIISESVQLAFGFIGEFNLKR-------APEIG--NQNWGKAMFCDPP 320
Y C ASN G I SV + E + R P++ + M C
Sbjct: 77 AIYECVASNNVGEI---SVSTRLTVLREDQIPRGFPTIDMGPQLKVVERTRTATMLCAAS 133
Query: 321 TNYPGVNYYWARDYFP----NFVEEDKRVFVSYDGALYFSALEQIDAGNYSC 368
N P W +D+ P N K++ GAL E+ D G Y C
Sbjct: 134 GN-PDPEITWFKDFLPVDTSNNNGRIKQLRSESIGALQIEQSEESDQGKYEC 184
Score = 35.4 bits (80), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 34/109 (31%), Positives = 47/109 (43%), Gaps = 12/109 (11%)
Query: 184 DKIPRG-PYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVAN- 241
D+IPRG P P V + ++ + T+ C A G P+P WFK+ D N
Sbjct: 102 DQIPRGFPTIDMGPQLKVVERTRTA-----TMLCAASGNPDPEITWFKDFLPVDTSNNNG 156
Query: 242 LIDPLSDKRFTLSGGNLIINDPRQVEDRGSYHCKASNKFGSIISESVQL 290
I L + S G L I + D+G Y C A+N G+ S L
Sbjct: 157 RIKQLRSE----SIGALQIEQSEE-SDQGKYECVATNSAGTRYSAPANL 200
>pdb|3PXJ|A Chain A, Tandem Ig Repeats Of Dlar
pdb|3PXJ|B Chain B, Tandem Ig Repeats Of Dlar
pdb|3PXJ|C Chain C, Tandem Ig Repeats Of Dlar
pdb|3PXJ|D Chain D, Tandem Ig Repeats Of Dlar
Length = 210
Score = 55.1 bits (131), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 47/183 (25%), Positives = 76/183 (41%), Gaps = 23/183 (12%)
Query: 603 GGNVTIFCNPEAAPKPKFVWKKDGN-IIGSGGRRKIFENGN----LLISPV--SRDDSGI 655
GG + +C P P VW+K+G + G+ R + E L I PV RDD+
Sbjct: 23 GGVASFYCAARGDPPPSIVWRKNGKKVSGTQSRYTVLEQPGGISILRIEPVRAGRDDA-P 81
Query: 656 YSCTATNVHGMDESKGRLIVLH-------GPSYYEQLPPKITIAAHRNLQLRCSAHTEEL 708
Y C A N G S + ++ G Q P I + + C A
Sbjct: 82 YECVAENGVGDAVSADATLTIYEGDKTPAGFPVITQGPGTRVIEVGHTVLMTCKAIGNPT 141
Query: 709 LDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEITNASFADAGEYECVVKSTVGKIST 768
++ W N ++ ++ P ++ G L+I N+ D G+YECV ++++G +
Sbjct: 142 PNI--YWIKNQTKV------DMSNPRYSLKDGFLQIENSREEDQGKYECVAENSMGTEHS 193
Query: 769 KTT 771
K T
Sbjct: 194 KAT 196
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 43/171 (25%), Positives = 69/171 (40%), Gaps = 16/171 (9%)
Query: 510 CEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQD-----NVLTIRYLNPERDPAMYQ 564
C A G P + W +NG+ ++ Q RY + + ++L I + RD A Y+
Sbjct: 30 CAARGDPPPSIVWRKNGKKVSG------TQSRYTVLEQPGGISILRIEPVRAGRDDAPYE 83
Query: 565 CRAKNQLKTRYSS-AQLRVLTLKPSFKKRPLESETYAGE----GGNVTIFCNPEAAPKPK 619
C A+N + S+ A L + + P+ ++ G V + C P P
Sbjct: 84 CVAENGVGDAVSADATLTIYEGDKTPAGFPVITQGPGTRVIEVGHTVLMTCKAIGNPTPN 143
Query: 620 FVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTATNVHGMDESK 670
W K+ + R ++G L I +D G Y C A N G + SK
Sbjct: 144 IYWIKNQTKVDMSNPRYSLKDGFLQIENSREEDQGKYECVAENSMGTEHSK 194
Score = 45.8 bits (107), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 34/124 (27%), Positives = 55/124 (44%), Gaps = 16/124 (12%)
Query: 168 LNDDRTYQYGMDIENPDKIPRG-PYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSY 226
+ D + + I DK P G P + P V ++ + + ++C A G P P+
Sbjct: 90 VGDAVSADATLTIYEGDKTPAGFPVITQGPGTRVIEVG-----HTVLMTCKAIGNPTPNI 144
Query: 227 EWFKEDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVEDRGSYHCKASNKFGSIISE 286
W K D +S+ R++L G L I + R+ ED+G Y C A N G+ S+
Sbjct: 145 YWIKNQTKVD---------MSNPRYSLKDGFLQIENSRE-EDQGKYECVAENSMGTEHSK 194
Query: 287 SVQL 290
+ L
Sbjct: 195 ATNL 198
Score = 44.7 bits (104), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 50/196 (25%), Positives = 77/196 (39%), Gaps = 25/196 (12%)
Query: 412 KAGDKVRLECVAFGYPVPSYNWTRRGSPLP----RNAYFENFN--RILTIPNVKV-EDQG 464
+ G C A G P PS W + G + R E IL I V+ D
Sbjct: 21 RVGGVASFYCAARGDPPPSIVWRKNGKKVSGTQSRYTVLEQPGGISILRIEPVRAGRDDA 80
Query: 465 EYICRASN---DRSALESSVTI-----SIQAEPNFTIPLTDKHMDNQADLTWTCEAFGVP 516
Y C A N D + ++++TI + P T + ++ + TC+A G P
Sbjct: 81 PYECVAENGVGDAVSADATLTIYEGDKTPAGFPVITQGPGTRVIEVGHTVLMTCKAIGNP 140
Query: 517 DVTYSWFRNGELLNSETLPLEDQDRYFIQDNVLTIRYLNPERDPAMYQCRAKNQLKTRYS 576
W +N +T RY ++D L I E D Y+C A+N + T +S
Sbjct: 141 TPNIYWIKN------QTKVDMSNPRYSLKDGFLQIENSR-EEDQGKYECVAENSMGTEHS 193
Query: 577 SAQ---LRVLTLKPSF 589
A ++V + P+F
Sbjct: 194 KATNLYVKVRRVPPTF 209
Score = 39.7 bits (91), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 37/145 (25%), Positives = 56/145 (38%), Gaps = 24/145 (16%)
Query: 351 GALYFSALEQIDAGN----YSCNVQSKVSDTGRNGPFFPLKVFPHSNFQQLKFPNNFPKT 406
G + +E + AG Y C ++ V D + ++ K P FP
Sbjct: 63 GGISILRIEPVRAGRDDAPYECVAENGVGDAVSADATLTI-------YEGDKTPAGFP-V 114
Query: 407 FPEAP-----KAGDKVRLECVAFGYPVPSYNWTRRGSPL----PRNAYFENFNRILTIPN 457
+ P + G V + C A G P P+ W + + + PR + + F L I N
Sbjct: 115 ITQGPGTRVIEVGHTVLMTCKAIGNPTPNIYWIKNQTKVDMSNPRYSLKDGF---LQIEN 171
Query: 458 VKVEDQGEYICRASNDRSALESSVT 482
+ EDQG+Y C A N S T
Sbjct: 172 SREEDQGKYECVAENSMGTEHSKAT 196
>pdb|2YD1|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of
Drosophila Receptor Protein Tyrosine Phosphatase Dlar
Length = 212
Score = 54.3 bits (129), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 47/183 (25%), Positives = 76/183 (41%), Gaps = 23/183 (12%)
Query: 603 GGNVTIFCNPEAAPKPKFVWKKDGN-IIGSGGRRKIFENGN----LLISPV--SRDDSGI 655
GG + +C P P VW+K+G + G+ R + E L I PV RDD+
Sbjct: 21 GGVASFYCAARGDPPPSIVWRKNGKKVSGTQSRYTVLEQPGGISILRIEPVRAGRDDA-P 79
Query: 656 YSCTATNVHGMDESKGRLIVLH-------GPSYYEQLPPKITIAAHRNLQLRCSAHTEEL 708
Y C A N G S + ++ G Q P I + + C A
Sbjct: 80 YECVAENGVGDAVSADATLTIYEGDKTPAGFPVITQGPGTRVIEVGHTVLMTCKAIGNPT 139
Query: 709 LDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEITNASFADAGEYECVVKSTVGKIST 768
++ W N ++ ++ P ++ G L+I N+ D G+YECV ++++G +
Sbjct: 140 PNI--YWIKNQTKV------DMSNPRYSLKDGFLQIENSREEDQGKYECVAENSMGTEHS 191
Query: 769 KTT 771
K T
Sbjct: 192 KAT 194
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 46/179 (25%), Positives = 69/179 (38%), Gaps = 32/179 (17%)
Query: 510 CEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQD-----NVLTIRYLNPERDPAMYQ 564
C A G P + W +NG+ ++ Q RY + + ++L I + RD A Y+
Sbjct: 28 CAARGDPPPSIVWRKNGKKVSG------TQSRYTVLEQPGGISILRIEPVRAGRDDAPYE 81
Query: 565 CRAKNQLKTRYSS-------------AQLRVLTLKPSFKKRPLESETYAGEGGNVTIFCN 611
C A+N + S+ A V+T P R +E G V + C
Sbjct: 82 CVAENGVGDAVSADATLTIYEGDKTPAGFPVITQGPG--TRVIEV------GHTVLMTCK 133
Query: 612 PEAAPKPKFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTATNVHGMDESK 670
P P W K+ + R ++G L I +D G Y C A N G + SK
Sbjct: 134 AIGNPTPNIYWIKNQTKVDMSNPRYSLKDGFLQIENSREEDQGKYECVAENSMGTEHSK 192
Score = 46.2 bits (108), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 33/114 (28%), Positives = 52/114 (45%), Gaps = 16/114 (14%)
Query: 178 MDIENPDKIPRG-PYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQD 236
+ I DK P G P + P V ++ + + ++C A G P P+ W K D
Sbjct: 98 LTIYEGDKTPAGFPVITQGPGTRVIEVG-----HTVLMTCKAIGNPTPNIYWIKNQTKVD 152
Query: 237 RLVANLIDPLSDKRFTLSGGNLIINDPRQVEDRGSYHCKASNKFGSIISESVQL 290
+S+ R++L G L I + R+ ED+G Y C A N G+ S++ L
Sbjct: 153 ---------MSNPRYSLKDGFLQIENSRE-EDQGKYECVAENSMGTEHSKATNL 196
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 47/182 (25%), Positives = 68/182 (37%), Gaps = 22/182 (12%)
Query: 412 KAGDKVRLECVAFGYPVPSYNWTRRGSPLP----RNAYFENFN--RILTIPNVKV-EDQG 464
+ G C A G P PS W + G + R E IL I V+ D
Sbjct: 19 RVGGVASFYCAARGDPPPSIVWRKNGKKVSGTQSRYTVLEQPGGISILRIEPVRAGRDDA 78
Query: 465 EYICRASNDRS-ALESSVTISI-------QAEPNFTIPLTDKHMDNQADLTWTCEAFGVP 516
Y C A N A+ + T++I P T + ++ + TC+A G P
Sbjct: 79 PYECVAENGVGDAVSADATLTIYEGDKTPAGFPVITQGPGTRVIEVGHTVLMTCKAIGNP 138
Query: 517 DVTYSWFRNGELLNSETLPLEDQDRYFIQDNVLTIRYLNPERDPAMYQCRAKNQLKTRYS 576
W +N +T RY ++D L I E D Y+C A+N + T +S
Sbjct: 139 TPNIYWIKN------QTKVDMSNPRYSLKDGFLQIENSR-EEDQGKYECVAENSMGTEHS 191
Query: 577 SA 578
A
Sbjct: 192 KA 193
Score = 40.8 bits (94), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 37/145 (25%), Positives = 56/145 (38%), Gaps = 24/145 (16%)
Query: 351 GALYFSALEQIDAGN----YSCNVQSKVSDTGRNGPFFPLKVFPHSNFQQLKFPNNFPKT 406
G + +E + AG Y C ++ V D + ++ K P FP
Sbjct: 61 GGISILRIEPVRAGRDDAPYECVAENGVGDAVSADATLTI-------YEGDKTPAGFP-V 112
Query: 407 FPEAP-----KAGDKVRLECVAFGYPVPSYNWTRRGSPL----PRNAYFENFNRILTIPN 457
+ P + G V + C A G P P+ W + + + PR + + F L I N
Sbjct: 113 ITQGPGTRVIEVGHTVLMTCKAIGNPTPNIYWIKNQTKVDMSNPRYSLKDGF---LQIEN 169
Query: 458 VKVEDQGEYICRASNDRSALESSVT 482
+ EDQG+Y C A N S T
Sbjct: 170 SREEDQGKYECVAENSMGTEHSKAT 194
>pdb|2XYC|A Chain A, Crystal Structure Of Ncam2 Igiv-Fn3i
Length = 291
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 68/289 (23%), Positives = 105/289 (36%), Gaps = 39/289 (13%)
Query: 602 EGGNVTIFCNPEAAPKPKFVWKK--DGNIIGSG-----GRRKI---FENGNLLISPVSRD 651
E G VT+ C+ E P P+ WK+ DG G GR ++ + +L I V
Sbjct: 14 ENGQVTLVCDAEGEPIPEITWKRAVDGFTFTEGDKSLDGRIEVKGQHGSSSLHIKDVKLS 73
Query: 652 DSGIYSCTATNVHGMDESKGRLIVLHGPS-------YYEQLPPKITIAAHRNLQLRCSAH 704
DSG Y C A + G + L + + P YY I I+ S H
Sbjct: 74 DSGRYDCEAASRIGGHQKSMYLDIEYAPKFISNQTIYYSWEGNPINISCDVKSNPPASIH 133
Query: 705 TEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEITNASFADAGEYECVVKSTVG 764
W + + + + L+T + +LEI S D G Y C + +G
Sbjct: 134 ----------WRRDKLVLPAKNTTNLKTYSTG-RKMILEIAPTSDNDFGRYNCTATNHIG 182
Query: 765 KISTKTTXXXXXXXXXXXXXXXXXXHKTSATIQWTD-GATNGRPITHYKIIARTNWNSTW 823
+ +T+A + + + G PI HY++ + + W
Sbjct: 183 TRFQEYILALADVPSSPYGVKIIELSQTTAKVSFNKPDSHGGVPIHHYQVDVKEVASEIW 242
Query: 824 FNVSEHVIGKEVDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPS 872
V H G + + N L P +TYE +V A N G G+ S
Sbjct: 243 KIVRSH----------GVQTMVVLNNLEPNTTYEIRVAAVNGKGQGDYS 281
Score = 43.9 bits (102), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 42/174 (24%), Positives = 67/174 (38%), Gaps = 19/174 (10%)
Query: 416 KVRLECVAFGYPVPSYNWTRRGSPLPRNAYFENFN-RI----------LTIPNVKVEDQG 464
+V L C A G P+P W R ++ + RI L I +VK+ D G
Sbjct: 17 QVTLVCDAEGEPIPEITWKRAVDGFTFTEGDKSLDGRIEVKGQHGSSSLHIKDVKLSDSG 76
Query: 465 EYICRASNDRSALESSVTISIQAEPNFTIPLTDKHMDNQADLTWTCEAFGVPDVTYSWFR 524
Y C A++ + S+ + I+ P F T + + +C+ P + W R
Sbjct: 77 RYDCEAASRIGGHQKSMYLDIEYAPKFISNQTIYYSWEGNPINISCDVKSNPPASIHWRR 136
Query: 525 NGELL---NSETLPLEDQDRYFIQDNVLTIRYLNPERDPAMYQCRAKNQLKTRY 575
+ +L N+ L R I + T + D Y C A N + TR+
Sbjct: 137 DKLVLPAKNTTNLKTYSTGRKMILEIAPT-----SDNDFGRYNCTATNHIGTRF 185
Score = 30.0 bits (66), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 36/133 (27%), Positives = 55/133 (41%), Gaps = 24/133 (18%)
Query: 212 ITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLSG----GNLIINDPRQVE 267
+TL C A G P P W + D D D R + G +L I D + +
Sbjct: 18 VTLVCDAEGEPIPEITWKR---AVDGFTFTEGDKSLDGRIEVKGQHGSSSLHIKDVK-LS 73
Query: 268 DRGSYHCKASNKFGSIISESVQLAFGFIGEFNLKRAPEIGNQ----NWGK---AMFCDPP 320
D G Y C+A+++ G +S+ L + +F I NQ +W + CD
Sbjct: 74 DSGRYDCEAASRIGG-HQKSMYLDIEYAPKF-------ISNQTIYYSWEGNPINISCDVK 125
Query: 321 TNYPGVNYYWARD 333
+N P + +W RD
Sbjct: 126 SN-PPASIHWRRD 137
>pdb|2DM3|A Chain A, Solution Structure Of The Second Ig Domain Of Human
Palladin
Length = 110
Score = 48.9 bits (115), Expect = 1e-05, Method: Composition-based stats.
Identities = 33/103 (32%), Positives = 47/103 (45%), Gaps = 9/103 (8%)
Query: 585 LKPSFKKRPLESETYAGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIF--ENG- 641
+P F + P + EG + C P P W+ DG + K+ ENG
Sbjct: 8 FRPHFLQAP--GDLTVQEGKLCRMDCKVSGLPTPDLSWQLDGKPVRPDSAHKMLVRENGV 65
Query: 642 -NLLISPVSRDDSGIYSCTATNVHGMDESKGRLIVL---HGPS 680
+L+I PV+ D+GIY+C ATN G + L+V GPS
Sbjct: 66 HSLIIEPVTSRDAGIYTCIATNRAGQNSFSLELVVAAKESGPS 108
Score = 36.2 bits (82), Expect = 0.086, Method: Composition-based stats.
Identities = 28/98 (28%), Positives = 42/98 (42%), Gaps = 10/98 (10%)
Query: 401 NNFPKTFPEAP-----KAGDKVRLECVAFGYPVPSYNWTRRGSPL-PRNAY----FENFN 450
+ F F +AP + G R++C G P P +W G P+ P +A+ EN
Sbjct: 6 SGFRPHFLQAPGDLTVQEGKLCRMDCKVSGLPTPDLSWQLDGKPVRPDSAHKMLVRENGV 65
Query: 451 RILTIPNVKVEDQGEYICRASNDRSALESSVTISIQAE 488
L I V D G Y C A+N S+ + + A+
Sbjct: 66 HSLIIEPVTSRDAGIYTCIATNRAGQNSFSLELVVAAK 103
Score = 31.6 bits (70), Expect = 2.1, Method: Composition-based stats.
Identities = 23/94 (24%), Positives = 38/94 (40%), Gaps = 15/94 (15%)
Query: 190 PYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDK 249
P+F++ P D+ K + C G P P W +L + P S
Sbjct: 10 PHFLQAPGDLTVQEGKLC-----RMDCKVSGLPTPDLSW--------QLDGKPVRPDSAH 56
Query: 250 RFTL--SGGNLIINDPRQVEDRGSYHCKASNKFG 281
+ + +G + +I +P D G Y C A+N+ G
Sbjct: 57 KMLVRENGVHSLIIEPVTSRDAGIYTCIATNRAG 90
>pdb|3BFO|A Chain A, Crystal Structure Of Ig-Like C2-Type 2 Domain Of The Human
Mucosa-Associated Lymphoid Tissue Lymphoma Translocation
Protein 1
pdb|3BFO|B Chain B, Crystal Structure Of Ig-Like C2-Type 2 Domain Of The Human
Mucosa-Associated Lymphoid Tissue Lymphoma Translocation
Protein 1
pdb|3BFO|C Chain C, Crystal Structure Of Ig-Like C2-Type 2 Domain Of The Human
Mucosa-Associated Lymphoid Tissue Lymphoma Translocation
Protein 1
pdb|3BFO|D Chain D, Crystal Structure Of Ig-Like C2-Type 2 Domain Of The Human
Mucosa-Associated Lymphoid Tissue Lymphoma Translocation
Protein 1
Length = 91
Score = 48.9 bits (115), Expect = 1e-05, Method: Composition-based stats.
Identities = 23/66 (34%), Positives = 33/66 (50%), Gaps = 5/66 (7%)
Query: 414 GDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYFENFNRILTIPNVKVEDQGEYICRASND 473
G + L+CVA G P+P Y W + PL ++ +P V +E QG Y C ND
Sbjct: 18 GSTLVLQCVAVGSPIPHYQWFKNELPLTHET-----KKLYMVPYVDLEHQGTYWCHVYND 72
Query: 474 RSALES 479
R + +S
Sbjct: 73 RDSQDS 78
>pdb|3V2A|R Chain R, Vegfr-2VEGF-A Complex Structure
Length = 772
Score = 48.5 bits (114), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 34/125 (27%), Positives = 60/125 (48%), Gaps = 12/125 (9%)
Query: 452 ILTIPNVKVEDQGEYIC----RASNDRSALESSVTISIQAEPNFTIPLTDKHMDNQADLT 507
I+ + N ++DQG+Y+C R + R + +T+ + P T L ++ +
Sbjct: 626 IMELKNASLQDQGDYVCLAQDRKTKKRHCVVRQLTVLERVAPTITGNLENQTTSIGESIE 685
Query: 508 WTCEAFGVPDVTYSWFRNGELLNSET-LPLEDQDRYFIQDNVLTIRYLNPERDPAMYQCR 566
+C A G P WF++ E L ++ + L+D +R LTIR + E D +Y C+
Sbjct: 686 VSCTASGNPPPQIMWFKDNETLVEDSGIVLKDGNRN------LTIRRVRKE-DEGLYTCQ 738
Query: 567 AKNQL 571
A + L
Sbjct: 739 ACSVL 743
Score = 47.8 bits (112), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 92/426 (21%), Positives = 149/426 (34%), Gaps = 96/426 (22%)
Query: 413 AGDKVRLECVA---------FGYPVPSYN-----WTRRGSPLPRNAYFENFNRILTIPNV 458
G+K+ L C A F + PS R + + F LTI V
Sbjct: 238 VGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLSTLTIDGV 297
Query: 459 KVEDQGEYICRASNDRSALESSVTISIQAEPNFTI-----PLTDKHMDNQADLTWTCEAF 513
DQG Y C AS+ ++S + + +P L + + + + +
Sbjct: 298 TRSDQGLYTCAASSGLMTKKNSTFVRVHEKPFVAFGSGMESLVEATVGERVRI--PAKYL 355
Query: 514 GVPDVTYSWFRNGELLNSETLPLEDQDRYFIQDNVLTIRYLNPERDPAMYQCRAKNQL-K 572
G P W++NG +PLE + +VLTI ++ ERD Y N + K
Sbjct: 356 GYPPPEIKWYKNG-------IPLES-NHTIKAGHVLTIMEVS-ERDTGNYTVILTNPISK 406
Query: 573 TRYSSAQLRVLTLKPSFKKR----PLESETYAGEGGNVTIFCNPEAAPKPKFV------- 621
+ S V+ + P ++ P++S Y G T+ C A P P +
Sbjct: 407 EKQSHVVSLVVYVPPQIGEKSLISPVDSYQY---GTTQTLTCTVYAIPPPHHIHWYWQLE 463
Query: 622 ---------------------WK-----KDGNIIGSGGRR-KIFENGNLLISPV---SRD 651
W+ + GN I + + E N +S + + +
Sbjct: 464 EECANEPSQAVSVTNPYPCEEWRSVEDFQGGNKIEVNKNQFALIEGKNKTVSTLVIQAAN 523
Query: 652 DSGIYSCTATNVHGMDESKGRLIVLHGPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDV 711
S +Y C A N G E V GP L P + ++ L C+A ++
Sbjct: 524 VSALYKCEAVNKVGRGERVISFHVTRGPEI--TLQPDMQPTEQESVSLWCTADRSTFENL 581
Query: 712 AYIWTHNGVRIGNMDLNELETP-----------------NINIDGGLLEITNASFADAGE 754
W G + + + EL TP N D ++E+ NAS D G+
Sbjct: 582 T--WYKLGPQPLPIHVGELPTPVCKNLDTLWKLNATMFSNSTNDILIMELKNASLQDQGD 639
Query: 755 YECVVK 760
Y C+ +
Sbjct: 640 YVCLAQ 645
Score = 44.7 bits (104), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 34/123 (27%), Positives = 59/123 (47%), Gaps = 8/123 (6%)
Query: 558 RDPAMYQCRAKNQLKTRYSSAQLRVLTL----KPSFKKRPLESETYAGEGGNVTIFCNPE 613
+D Y C A+++ KT+ +R LT+ P+ LE++T G ++ + C
Sbjct: 635 QDQGDYVCLAQDR-KTKKRHCVVRQLTVLERVAPTITGN-LENQT-TSIGESIEVSCTAS 691
Query: 614 AAPKPKFVWKKDG-NIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTATNVHGMDESKGR 672
P P+ +W KD ++ G N NL I V ++D G+Y+C A +V G + +
Sbjct: 692 GNPPPQIMWFKDNETLVEDSGIVLKDGNRNLTIRRVRKEDEGLYTCQACSVLGCAKVEAF 751
Query: 673 LIV 675
I+
Sbjct: 752 FII 754
Score = 43.9 bits (102), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 43/171 (25%), Positives = 65/171 (38%), Gaps = 16/171 (9%)
Query: 352 ALYFSALEQIDAGNYSCNVQSKVSDTGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPEAP 411
L + + D G Y+C S + T +N F + P F + ++ EA
Sbjct: 291 TLTIDGVTRSDQGLYTCAASSGLM-TKKNSTFVRVHEKPFVAF------GSGMESLVEA- 342
Query: 412 KAGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYFENFNRILTIPNVKVEDQGEYICRAS 471
G++VR+ GYP P W + G PL N + +LTI V D G Y +
Sbjct: 343 TVGERVRIPAKYLGYPPPEIKWYKNGIPLESNHTIKA-GHVLTIMEVSERDTGNYTVILT 401
Query: 472 NDRSALESSVTISI------QAEPNFTIPLTDKHMDNQADLTWTCEAFGVP 516
N S + S +S+ Q I D + T TC + +P
Sbjct: 402 NPISKEKQSHVVSLVVYVPPQIGEKSLISPVDSYQYGTTQ-TLTCTVYAIP 451
Score = 40.4 bits (93), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 33/99 (33%), Positives = 44/99 (44%), Gaps = 13/99 (13%)
Query: 207 SILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLSGG--NLIINDPR 264
SI I +SC A G P P WFK++ + LV D L G NL I R
Sbjct: 679 SIGESIEVSCTASGNPPPQIMWFKDN---ETLV-------EDSGIVLKDGNRNLTIRRVR 728
Query: 265 QVEDRGSYHCKASNKFGSIISESVQLAFGFIGEFNLKRA 303
+ ED G Y C+A + G E+ + G + NL+R
Sbjct: 729 K-EDEGLYTCQACSVLGCAKVEAFFIIEGAQEKTNLERT 766
Score = 39.7 bits (91), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 29/118 (24%), Positives = 46/118 (38%), Gaps = 19/118 (16%)
Query: 362 DAGNYSCNVQSKVSDTGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFP-----EAPKAGDK 416
D G+Y C Q + + H +QL T + G+
Sbjct: 636 DQGDYVCLAQDRKTKKR------------HCVVRQLTVLERVAPTITGNLENQTTSIGES 683
Query: 417 VRLECVAFGYPVPSYNWTRRGSPLPRNA--YFENFNRILTIPNVKVEDQGEYICRASN 472
+ + C A G P P W + L ++ ++ NR LTI V+ ED+G Y C+A +
Sbjct: 684 IEVSCTASGNPPPQIMWFKDNETLVEDSGIVLKDGNRNLTIRRVRKEDEGLYTCQACS 741
>pdb|2V5T|A Chain A, Crystal Structure Of Ncam2 Ig2-3
Length = 189
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 46/187 (24%), Positives = 84/187 (44%), Gaps = 19/187 (10%)
Query: 408 PEAPKAGDKVRLECVAFGYPVPSYNW---TRRGSPLPRNAYFENFNRILTIPNVKVEDQG 464
P+ K G+ + C P P+ +W + + N + N L I N+ D+G
Sbjct: 11 PQEFKQGEDAEVVCRVSSSPAPAVSWLYHNEEVTTISDNRFAMLANNNLQILNINKSDEG 70
Query: 465 EYICRASND-RSALE-SSVTISIQAEPNFTIPLT--DKHMDNQADLTWTCEAFGVPDVTY 520
Y C + R ++ + + + P ++P + + ++T++C A G P+
Sbjct: 71 IYRCEGRVEARGEIDFRDIIVIVNVPPAISMPQKSFNATAERGEEMTFSCRASGSPEPAI 130
Query: 521 SWFRNGELLNSETLPLEDQDRYFIQ--DNVLTIR-YLNPERDPAMYQCRAKNQLKTRYSS 577
SWFRNG+L +E+ ++Y ++ + LT+R +N + P Y CRA N+
Sbjct: 131 SWFRNGKL-------IEENEKYILKGSNTELTVRNIINSDGGP--YVCRATNKAGEDEKQ 181
Query: 578 AQLRVLT 584
A L+V
Sbjct: 182 AFLQVFV 188
Score = 46.6 bits (109), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 41/175 (23%), Positives = 66/175 (37%), Gaps = 9/175 (5%)
Query: 505 DLTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQDNVLTIRYLNPERDPAMYQ 564
D C P SW + N E + D +R+ + N + D +Y+
Sbjct: 19 DAEVVCRVSSSPAPAVSWLYH----NEEVTTISD-NRFAMLANNNLQILNINKSDEGIYR 73
Query: 565 CRAKNQLKTRYSSAQLRVLTLKPSFKKRPLES-ETYAGEGGNVTIFCNPEAAPKPKFVWK 623
C + + + + V+ P P +S A G +T C +P+P W
Sbjct: 74 CEGRVEARGEIDFRDIIVIVNVPPAISMPQKSFNATAERGEEMTFSCRASGSPEPAISWF 133
Query: 624 KDGNIIGSGGRRKIFENGN--LLISPVSRDDSGIYSCTATNVHGMDESKGRLIVL 676
++G +I + I + N L + + D G Y C ATN G DE + L V
Sbjct: 134 RNGKLIEEN-EKYILKGSNTELTVRNIINSDGGPYVCRATNKAGEDEKQAFLQVF 187
Score = 45.1 bits (105), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 37/70 (52%), Gaps = 2/70 (2%)
Query: 405 KTFPEAPKAGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYF--ENFNRILTIPNVKVED 462
K+F + G+++ C A G P P+ +W R G + N + + N LT+ N+ D
Sbjct: 104 KSFNATAERGEEMTFSCRASGSPEPAISWFRNGKLIEENEKYILKGSNTELTVRNIINSD 163
Query: 463 QGEYICRASN 472
G Y+CRA+N
Sbjct: 164 GGPYVCRATN 173
Score = 38.1 bits (87), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 36/77 (46%), Gaps = 21/77 (27%)
Query: 211 DITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGNL------IINDPR 264
++T SC A G P P+ WF+ LI+ ++++ L G N IIN
Sbjct: 115 EMTFSCRASGSPEPAISWFRN--------GKLIE--ENEKYILKGSNTELTVRNIINS-- 162
Query: 265 QVEDRGSYHCKASNKFG 281
D G Y C+A+NK G
Sbjct: 163 ---DGGPYVCRATNKAG 176
>pdb|1II4|E Chain E, Crystal Structure Of Ser252trp Apert Mutant Fgf Receptor 2
(Fgfr2) In Complex With Fgf2
pdb|1II4|F Chain F, Crystal Structure Of Ser252trp Apert Mutant Fgf Receptor 2
(Fgfr2) In Complex With Fgf2
pdb|1II4|G Chain G, Crystal Structure Of Ser252trp Apert Mutant Fgf Receptor 2
(Fgfr2) In Complex With Fgf2
pdb|1II4|H Chain H, Crystal Structure Of Ser252trp Apert Mutant Fgf Receptor 2
(Fgfr2) In Complex With Fgf2
Length = 220
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 45/188 (23%), Positives = 75/188 (39%), Gaps = 17/188 (9%)
Query: 594 LESETYAGEGGNVTIF-CNPEAAPKPKFVWKKDGNIIGS----GGRRKIFENGNLLISPV 648
+E +A N F C P P W K+G GG + ++ +L++ V
Sbjct: 16 MEKRLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESV 75
Query: 649 SRDDSGIYSCTATNVHGMDESKGRLIVL----HGPSYYEQLPPKITIAAHRNLQLRCSAH 704
D G Y+C N +G L V+ H P LP + +++ C +
Sbjct: 76 VPSDKGNYTCVVENEYGSINHTYHLDVVERWPHRPILQAGLPANASTVVGGDVEFVCKVY 135
Query: 705 TEELLDVAYI--WTHNGVRIGNMDL---NELETPNINIDGGLLE---ITNASFADAGEYE 756
++ + +I NG + G L L+ +N +E I N +F DAGEY
Sbjct: 136 SDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKAAGVNTTDKEIEVLYIRNVTFEDAGEYT 195
Query: 757 CVVKSTVG 764
C+ +++G
Sbjct: 196 CLAGNSIG 203
Score = 39.3 bits (90), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 45/193 (23%), Positives = 72/193 (37%), Gaps = 29/193 (15%)
Query: 510 CEAFGVPDVTYSWFRNGELLNSE----TLPLEDQDRYFIQDNVLTIRYLNPERDPAMYQC 565
C A G P T W +NG+ E + +Q I ++V+ D Y C
Sbjct: 33 CPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVP-------SDKGNYTC 85
Query: 566 RAKNQLKTRYSSAQLRVLTLKPS--FKKRPLESETYAGEGGNVTIFCNPEAAPKPKFVW- 622
+N+ + + L V+ P + L + GG+V C + +P W
Sbjct: 86 VVENEYGSINHTYHLDVVERWPHRPILQAGLPANASTVVGGDVEFVCKVYSDAQPHIQWI 145
Query: 623 ---KKDGNIIGSGGR--RKIFENGN----------LLISPVSRDDSGIYSCTATNVHGMD 667
+K+G+ G G K+ + L I V+ +D+G Y+C A N G+
Sbjct: 146 KHVEKNGSKYGPDGLPYLKVLKAAGVNTTDKEIEVLYIRNVTFEDAGEYTCLAGNSIGIS 205
Query: 668 ESKGRLIVLHGPS 680
L VL P
Sbjct: 206 FHSAWLTVLPAPG 218
Score = 39.3 bits (90), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 44/199 (22%), Positives = 74/199 (37%), Gaps = 29/199 (14%)
Query: 409 EAPKAGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYF-----ENFNRILTIPNVKVEDQ 463
A A + V+ C A G P+P+ W + G + N + L + +V D+
Sbjct: 21 HAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDK 80
Query: 464 GEYICRASNDRSALESSVTISIQAEPNFTIPLTDKHMDNQA------DLTWTCEAFGVPD 517
G Y C N+ ++ + + + E P+ + A D+ + C+ +
Sbjct: 81 GNYTCVVENEYGSINHTYHLDV-VERWPHRPILQAGLPANASTVVGGDVEFVCKVYSDAQ 139
Query: 518 VTYSWF----RNGELLNSETLP---------LEDQDRYFIQDNVLTIRYLNPERDPAMYQ 564
W +NG + LP + D+ + VL IR + E D Y
Sbjct: 140 PHIQWIKHVEKNGSKYGPDGLPYLKVLKAAGVNTTDK---EIEVLYIRNVTFE-DAGEYT 195
Query: 565 CRAKNQLKTRYSSAQLRVL 583
C A N + + SA L VL
Sbjct: 196 CLAGNSIGISFHSAWLTVL 214
Score = 37.4 bits (85), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 34/155 (21%), Positives = 51/155 (32%), Gaps = 23/155 (14%)
Query: 352 ALYFSALEQIDAGNYSCNVQSKVSDTGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPEAP 411
+L ++ D GNY+C V+++ ++ +PH Q P N
Sbjct: 69 SLIMESVVPSDKGNYTCVVENEYGSINHTYHLDVVERWPHRPILQAGLPANASTVV---- 124
Query: 412 KAGDKVRLECVAFGYPVPSYNWTRR-----------GSPLPRNAYFENFN------RILT 454
G V C + P W + G P + N +L
Sbjct: 125 --GGDVEFVCKVYSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKAAGVNTTDKEIEVLY 182
Query: 455 IPNVKVEDQGEYICRASNDRSALESSVTISIQAEP 489
I NV ED GEY C A N S +++ P
Sbjct: 183 IRNVTFEDAGEYTCLAGNSIGISFHSAWLTVLPAP 217
Score = 34.3 bits (77), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 37/76 (48%), Gaps = 10/76 (13%)
Query: 210 NDITLSCYAGGYPNPSYEWFK--EDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVE 267
N + C AGG P P+ W K +++ Q+ + + ++ ++L I +
Sbjct: 27 NTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGY--KVRNQHWSL------IMESVVPS 78
Query: 268 DRGSYHCKASNKFGSI 283
D+G+Y C N++GSI
Sbjct: 79 DKGNYTCVVENEYGSI 94
>pdb|1EV2|E Chain E, Crystal Structure Of Fgf2 In Complex With The
Extracellular Ligand Binding Domain Of Fgf Receptor 2
(Fgfr2)
pdb|1EV2|F Chain F, Crystal Structure Of Fgf2 In Complex With The
Extracellular Ligand Binding Domain Of Fgf Receptor 2
(Fgfr2)
pdb|1EV2|G Chain G, Crystal Structure Of Fgf2 In Complex With The
Extracellular Ligand Binding Domain Of Fgf Receptor 2
(Fgfr2)
pdb|1EV2|H Chain H, Crystal Structure Of Fgf2 In Complex With The
Extracellular Ligand Binding Domain Of Fgf Receptor 2
(Fgfr2)
Length = 220
Score = 47.8 bits (112), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 45/188 (23%), Positives = 75/188 (39%), Gaps = 17/188 (9%)
Query: 594 LESETYAGEGGNVTIF-CNPEAAPKPKFVWKKDGNIIGS----GGRRKIFENGNLLISPV 648
+E +A N F C P P W K+G GG + ++ +L++ V
Sbjct: 16 MEKRLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESV 75
Query: 649 SRDDSGIYSCTATNVHGMDESKGRLIVL----HGPSYYEQLPPKITIAAHRNLQLRCSAH 704
D G Y+C N +G L V+ H P LP + +++ C +
Sbjct: 76 VPSDKGNYTCVVENEYGSINHTYHLDVVERSPHRPILQAGLPANASTVVGGDVEFVCKVY 135
Query: 705 TEELLDVAYI--WTHNGVRIGNMDL---NELETPNINIDGGLLE---ITNASFADAGEYE 756
++ + +I NG + G L L+ +N +E I N +F DAGEY
Sbjct: 136 SDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKAAGVNTTDKEIEVLYIRNVTFEDAGEYT 195
Query: 757 CVVKSTVG 764
C+ +++G
Sbjct: 196 CLAGNSIG 203
Score = 40.8 bits (94), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 44/199 (22%), Positives = 75/199 (37%), Gaps = 29/199 (14%)
Query: 409 EAPKAGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYF-----ENFNRILTIPNVKVEDQ 463
A A + V+ C A G P+P+ W + G + N + L + +V D+
Sbjct: 21 HAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDK 80
Query: 464 GEYICRASNDRSALESSVTISIQAEPNFTIPLTDKHMDNQA------DLTWTCEAFGVPD 517
G Y C N+ ++ + + + E + P+ + A D+ + C+ +
Sbjct: 81 GNYTCVVENEYGSINHTYHLDV-VERSPHRPILQAGLPANASTVVGGDVEFVCKVYSDAQ 139
Query: 518 VTYSWF----RNGELLNSETLP---------LEDQDRYFIQDNVLTIRYLNPERDPAMYQ 564
W +NG + LP + D+ + VL IR + E D Y
Sbjct: 140 PHIQWIKHVEKNGSKYGPDGLPYLKVLKAAGVNTTDK---EIEVLYIRNVTFE-DAGEYT 195
Query: 565 CRAKNQLKTRYSSAQLRVL 583
C A N + + SA L VL
Sbjct: 196 CLAGNSIGISFHSAWLTVL 214
Score = 40.0 bits (92), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 45/193 (23%), Positives = 72/193 (37%), Gaps = 29/193 (15%)
Query: 510 CEAFGVPDVTYSWFRNGELLNSE----TLPLEDQDRYFIQDNVLTIRYLNPERDPAMYQC 565
C A G P T W +NG+ E + +Q I ++V+ D Y C
Sbjct: 33 CPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVP-------SDKGNYTC 85
Query: 566 RAKNQLKTRYSSAQLRVLTLKPS--FKKRPLESETYAGEGGNVTIFCNPEAAPKPKFVW- 622
+N+ + + L V+ P + L + GG+V C + +P W
Sbjct: 86 VVENEYGSINHTYHLDVVERSPHRPILQAGLPANASTVVGGDVEFVCKVYSDAQPHIQWI 145
Query: 623 ---KKDGNIIGSGGR--RKIFENGN----------LLISPVSRDDSGIYSCTATNVHGMD 667
+K+G+ G G K+ + L I V+ +D+G Y+C A N G+
Sbjct: 146 KHVEKNGSKYGPDGLPYLKVLKAAGVNTTDKEIEVLYIRNVTFEDAGEYTCLAGNSIGIS 205
Query: 668 ESKGRLIVLHGPS 680
L VL P
Sbjct: 206 FHSAWLTVLPAPG 218
Score = 35.8 bits (81), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 34/155 (21%), Positives = 50/155 (32%), Gaps = 23/155 (14%)
Query: 352 ALYFSALEQIDAGNYSCNVQSKVSDTGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPEAP 411
+L ++ D GNY+C V+++ ++ PH Q P N
Sbjct: 69 SLIMESVVPSDKGNYTCVVENEYGSINHTYHLDVVERSPHRPILQAGLPANASTVV---- 124
Query: 412 KAGDKVRLECVAFGYPVPSYNWTRR-----------GSPLPRNAYFENFN------RILT 454
G V C + P W + G P + N +L
Sbjct: 125 --GGDVEFVCKVYSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKAAGVNTTDKEIEVLY 182
Query: 455 IPNVKVEDQGEYICRASNDRSALESSVTISIQAEP 489
I NV ED GEY C A N S +++ P
Sbjct: 183 IRNVTFEDAGEYTCLAGNSIGISFHSAWLTVLPAP 217
Score = 34.3 bits (77), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 37/76 (48%), Gaps = 10/76 (13%)
Query: 210 NDITLSCYAGGYPNPSYEWFK--EDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVE 267
N + C AGG P P+ W K +++ Q+ + + ++ ++L I +
Sbjct: 27 NTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGY--KVRNQHWSL------IMESVVPS 78
Query: 268 DRGSYHCKASNKFGSI 283
D+G+Y C N++GSI
Sbjct: 79 DKGNYTCVVENEYGSI 94
>pdb|2FDB|P Chain P, Crystal Structure Of Fibroblast Growth Factor (Fgf)8b In
Complex With Fgf Receptor (Fgfr) 2c
pdb|2FDB|R Chain R, Crystal Structure Of Fibroblast Growth Factor (Fgf)8b In
Complex With Fgf Receptor (Fgfr) 2c
Length = 220
Score = 47.8 bits (112), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 45/188 (23%), Positives = 75/188 (39%), Gaps = 17/188 (9%)
Query: 594 LESETYAGEGGNVTIF-CNPEAAPKPKFVWKKDGNIIGS----GGRRKIFENGNLLISPV 648
+E +A N F C P P W K+G GG + ++ +L++ V
Sbjct: 14 MEKRLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESV 73
Query: 649 SRDDSGIYSCTATNVHGMDESKGRLIVL----HGPSYYEQLPPKITIAAHRNLQLRCSAH 704
D G Y+C N +G L V+ H P LP + +++ C +
Sbjct: 74 VPSDKGNYTCVVENEYGSINHTYHLDVVERSRHRPILQAGLPANASTVVGGDVEFVCKVY 133
Query: 705 TEELLDVAYI--WTHNGVRIGNMDL---NELETPNINIDGGLLE---ITNASFADAGEYE 756
++ + +I NG + G L L+ +N +E I N +F DAGEY
Sbjct: 134 SDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKAAGVNTTDKEIEVLYIRNVTFEDAGEYT 193
Query: 757 CVVKSTVG 764
C+ +++G
Sbjct: 194 CLAGNSIG 201
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 44/199 (22%), Positives = 75/199 (37%), Gaps = 29/199 (14%)
Query: 409 EAPKAGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYF-----ENFNRILTIPNVKVEDQ 463
A A + V+ C A G P+P+ W + G + N + L + +V D+
Sbjct: 19 HAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDK 78
Query: 464 GEYICRASNDRSALESSVTISIQAEPNFTIPLTDKHMDNQA------DLTWTCEAFGVPD 517
G Y C N+ ++ + + + E + P+ + A D+ + C+ +
Sbjct: 79 GNYTCVVENEYGSINHTYHLDV-VERSRHRPILQAGLPANASTVVGGDVEFVCKVYSDAQ 137
Query: 518 VTYSWF----RNGELLNSETLP---------LEDQDRYFIQDNVLTIRYLNPERDPAMYQ 564
W +NG + LP + D+ + VL IR + E D Y
Sbjct: 138 PHIQWIKHVEKNGSKYGPDGLPYLKVLKAAGVNTTDK---EIEVLYIRNVTFE-DAGEYT 193
Query: 565 CRAKNQLKTRYSSAQLRVL 583
C A N + + SA L VL
Sbjct: 194 CLAGNSIGISFHSAWLTVL 212
Score = 37.7 bits (86), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 46/196 (23%), Positives = 73/196 (37%), Gaps = 35/196 (17%)
Query: 510 CEAFGVPDVTYSWFRNGELLNSE----TLPLEDQDRYFIQDNVLTIRYLNPERDPAMYQC 565
C A G P T W +NG+ E + +Q I ++V+ D Y C
Sbjct: 31 CPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVP-------SDKGNYTC 83
Query: 566 RAKNQLKTRYSSAQLRVLTLKPSFKKRP-----LESETYAGEGGNVTIFCNPEAAPKPKF 620
+N+ + + L V+ + RP L + GG+V C + +P
Sbjct: 84 VVENEYGSINHTYHLDVVERS---RHRPILQAGLPANASTVVGGDVEFVCKVYSDAQPHI 140
Query: 621 VW----KKDGNIIGSGGR--RKIFENGN----------LLISPVSRDDSGIYSCTATNVH 664
W +K+G+ G G K+ + L I V+ +D+G Y+C A N
Sbjct: 141 QWIKHVEKNGSKYGPDGLPYLKVLKAAGVNTTDKEIEVLYIRNVTFEDAGEYTCLAGNSI 200
Query: 665 GMDESKGRLIVLHGPS 680
G+ L VL P
Sbjct: 201 GISFHSAWLTVLPAPG 216
Score = 34.3 bits (77), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 37/76 (48%), Gaps = 10/76 (13%)
Query: 210 NDITLSCYAGGYPNPSYEWFK--EDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVE 267
N + C AGG P P+ W K +++ Q+ + + ++ ++L I +
Sbjct: 25 NTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGY--KVRNQHWSL------IMESVVPS 76
Query: 268 DRGSYHCKASNKFGSI 283
D+G+Y C N++GSI
Sbjct: 77 DKGNYTCVVENEYGSI 92
Score = 32.3 bits (72), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 33/155 (21%), Positives = 49/155 (31%), Gaps = 23/155 (14%)
Query: 352 ALYFSALEQIDAGNYSCNVQSKVSDTGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPEAP 411
+L ++ D GNY+C V+++ ++ H Q P N
Sbjct: 67 SLIMESVVPSDKGNYTCVVENEYGSINHTYHLDVVERSRHRPILQAGLPANASTVV---- 122
Query: 412 KAGDKVRLECVAFGYPVPSYNWTRR-----------GSPLPRNAYFENFN------RILT 454
G V C + P W + G P + N +L
Sbjct: 123 --GGDVEFVCKVYSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKAAGVNTTDKEIEVLY 180
Query: 455 IPNVKVEDQGEYICRASNDRSALESSVTISIQAEP 489
I NV ED GEY C A N S +++ P
Sbjct: 181 IRNVTFEDAGEYTCLAGNSIGISFHSAWLTVLPAP 215
>pdb|1E0O|B Chain B, Crystal Structure Of A Ternary Fgf1-Fgfr2-Heparin Complex
pdb|1E0O|D Chain D, Crystal Structure Of A Ternary Fgf1-Fgfr2-Heparin Complex
Length = 219
Score = 47.8 bits (112), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 45/188 (23%), Positives = 75/188 (39%), Gaps = 17/188 (9%)
Query: 594 LESETYAGEGGNVTIF-CNPEAAPKPKFVWKKDGNIIGS----GGRRKIFENGNLLISPV 648
+E +A N F C P P W K+G GG + ++ +L++ V
Sbjct: 15 MEKRLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESV 74
Query: 649 SRDDSGIYSCTATNVHGMDESKGRLIVL----HGPSYYEQLPPKITIAAHRNLQLRCSAH 704
D G Y+C N +G L V+ H P LP + +++ C +
Sbjct: 75 VPSDKGNYTCVVENEYGSINHTYHLDVVERSPHRPILQAGLPANASTVVGGDVEFVCKVY 134
Query: 705 TEELLDVAYI--WTHNGVRIGNMDL---NELETPNINIDGGLLE---ITNASFADAGEYE 756
++ + +I NG + G L L+ +N +E I N +F DAGEY
Sbjct: 135 SDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKAAGVNTTDKEIEVLYIRNVTFEDAGEYT 194
Query: 757 CVVKSTVG 764
C+ +++G
Sbjct: 195 CLAGNSIG 202
Score = 40.8 bits (94), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 44/199 (22%), Positives = 75/199 (37%), Gaps = 29/199 (14%)
Query: 409 EAPKAGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYF-----ENFNRILTIPNVKVEDQ 463
A A + V+ C A G P+P+ W + G + N + L + +V D+
Sbjct: 20 HAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDK 79
Query: 464 GEYICRASNDRSALESSVTISIQAEPNFTIPLTDKHMDNQA------DLTWTCEAFGVPD 517
G Y C N+ ++ + + + E + P+ + A D+ + C+ +
Sbjct: 80 GNYTCVVENEYGSINHTYHLDV-VERSPHRPILQAGLPANASTVVGGDVEFVCKVYSDAQ 138
Query: 518 VTYSWF----RNGELLNSETLP---------LEDQDRYFIQDNVLTIRYLNPERDPAMYQ 564
W +NG + LP + D+ + VL IR + E D Y
Sbjct: 139 PHIQWIKHVEKNGSKYGPDGLPYLKVLKAAGVNTTDK---EIEVLYIRNVTFE-DAGEYT 194
Query: 565 CRAKNQLKTRYSSAQLRVL 583
C A N + + SA L VL
Sbjct: 195 CLAGNSIGISFHSAWLTVL 213
Score = 40.0 bits (92), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 45/193 (23%), Positives = 72/193 (37%), Gaps = 29/193 (15%)
Query: 510 CEAFGVPDVTYSWFRNGELLNSE----TLPLEDQDRYFIQDNVLTIRYLNPERDPAMYQC 565
C A G P T W +NG+ E + +Q I ++V+ D Y C
Sbjct: 32 CPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVP-------SDKGNYTC 84
Query: 566 RAKNQLKTRYSSAQLRVLTLKPS--FKKRPLESETYAGEGGNVTIFCNPEAAPKPKFVW- 622
+N+ + + L V+ P + L + GG+V C + +P W
Sbjct: 85 VVENEYGSINHTYHLDVVERSPHRPILQAGLPANASTVVGGDVEFVCKVYSDAQPHIQWI 144
Query: 623 ---KKDGNIIGSGGR--RKIFENGN----------LLISPVSRDDSGIYSCTATNVHGMD 667
+K+G+ G G K+ + L I V+ +D+G Y+C A N G+
Sbjct: 145 KHVEKNGSKYGPDGLPYLKVLKAAGVNTTDKEIEVLYIRNVTFEDAGEYTCLAGNSIGIS 204
Query: 668 ESKGRLIVLHGPS 680
L VL P
Sbjct: 205 FHSAWLTVLPAPG 217
Score = 35.8 bits (81), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 34/155 (21%), Positives = 50/155 (32%), Gaps = 23/155 (14%)
Query: 352 ALYFSALEQIDAGNYSCNVQSKVSDTGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPEAP 411
+L ++ D GNY+C V+++ ++ PH Q P N
Sbjct: 68 SLIMESVVPSDKGNYTCVVENEYGSINHTYHLDVVERSPHRPILQAGLPANASTVV---- 123
Query: 412 KAGDKVRLECVAFGYPVPSYNWTRR-----------GSPLPRNAYFENFN------RILT 454
G V C + P W + G P + N +L
Sbjct: 124 --GGDVEFVCKVYSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKAAGVNTTDKEIEVLY 181
Query: 455 IPNVKVEDQGEYICRASNDRSALESSVTISIQAEP 489
I NV ED GEY C A N S +++ P
Sbjct: 182 IRNVTFEDAGEYTCLAGNSIGISFHSAWLTVLPAP 216
Score = 34.3 bits (77), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 37/76 (48%), Gaps = 10/76 (13%)
Query: 210 NDITLSCYAGGYPNPSYEWFK--EDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVE 267
N + C AGG P P+ W K +++ Q+ + + ++ ++L I +
Sbjct: 26 NTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGY--KVRNQHWSL------IMESVVPS 77
Query: 268 DRGSYHCKASNKFGSI 283
D+G+Y C N++GSI
Sbjct: 78 DKGNYTCVVENEYGSI 93
>pdb|1IIL|E Chain E, Crystal Structure Of Pro253arg Apert Mutant Fgf Receptor 2
(Fgfr2) In Complex With Fgf2
pdb|1IIL|F Chain F, Crystal Structure Of Pro253arg Apert Mutant Fgf Receptor 2
(Fgfr2) In Complex With Fgf2
pdb|1IIL|G Chain G, Crystal Structure Of Pro253arg Apert Mutant Fgf Receptor 2
(Fgfr2) In Complex With Fgf2
pdb|1IIL|H Chain H, Crystal Structure Of Pro253arg Apert Mutant Fgf Receptor 2
(Fgfr2) In Complex With Fgf2
Length = 220
Score = 47.8 bits (112), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 45/188 (23%), Positives = 75/188 (39%), Gaps = 17/188 (9%)
Query: 594 LESETYAGEGGNVTIF-CNPEAAPKPKFVWKKDGNIIGS----GGRRKIFENGNLLISPV 648
+E +A N F C P P W K+G GG + ++ +L++ V
Sbjct: 16 MEKRLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESV 75
Query: 649 SRDDSGIYSCTATNVHGMDESKGRLIVL----HGPSYYEQLPPKITIAAHRNLQLRCSAH 704
D G Y+C N +G L V+ H P LP + +++ C +
Sbjct: 76 VPSDKGNYTCVVENEYGSINHTYHLDVVERSRHRPILQAGLPANASTVVGGDVEFVCKVY 135
Query: 705 TEELLDVAYI--WTHNGVRIGNMDL---NELETPNINIDGGLLE---ITNASFADAGEYE 756
++ + +I NG + G L L+ +N +E I N +F DAGEY
Sbjct: 136 SDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKAAGVNTTDKEIEVLYIRNVTFEDAGEYT 195
Query: 757 CVVKSTVG 764
C+ +++G
Sbjct: 196 CLAGNSIG 203
Score = 41.2 bits (95), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 44/199 (22%), Positives = 75/199 (37%), Gaps = 29/199 (14%)
Query: 409 EAPKAGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYF-----ENFNRILTIPNVKVEDQ 463
A A + V+ C A G P+P+ W + G + N + L + +V D+
Sbjct: 21 HAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDK 80
Query: 464 GEYICRASNDRSALESSVTISIQAEPNFTIPLTDKHMDNQA------DLTWTCEAFGVPD 517
G Y C N+ ++ + + + E + P+ + A D+ + C+ +
Sbjct: 81 GNYTCVVENEYGSINHTYHLDV-VERSRHRPILQAGLPANASTVVGGDVEFVCKVYSDAQ 139
Query: 518 VTYSWF----RNGELLNSETLP---------LEDQDRYFIQDNVLTIRYLNPERDPAMYQ 564
W +NG + LP + D+ + VL IR + E D Y
Sbjct: 140 PHIQWIKHVEKNGSKYGPDGLPYLKVLKAAGVNTTDK---EIEVLYIRNVTFE-DAGEYT 195
Query: 565 CRAKNQLKTRYSSAQLRVL 583
C A N + + SA L VL
Sbjct: 196 CLAGNSIGISFHSAWLTVL 214
Score = 37.7 bits (86), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 46/196 (23%), Positives = 73/196 (37%), Gaps = 35/196 (17%)
Query: 510 CEAFGVPDVTYSWFRNGELLNSE----TLPLEDQDRYFIQDNVLTIRYLNPERDPAMYQC 565
C A G P T W +NG+ E + +Q I ++V+ D Y C
Sbjct: 33 CPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVP-------SDKGNYTC 85
Query: 566 RAKNQLKTRYSSAQLRVLTLKPSFKKRP-----LESETYAGEGGNVTIFCNPEAAPKPKF 620
+N+ + + L V+ + RP L + GG+V C + +P
Sbjct: 86 VVENEYGSINHTYHLDVVERS---RHRPILQAGLPANASTVVGGDVEFVCKVYSDAQPHI 142
Query: 621 VW----KKDGNIIGSGGR--RKIFENGN----------LLISPVSRDDSGIYSCTATNVH 664
W +K+G+ G G K+ + L I V+ +D+G Y+C A N
Sbjct: 143 QWIKHVEKNGSKYGPDGLPYLKVLKAAGVNTTDKEIEVLYIRNVTFEDAGEYTCLAGNSI 202
Query: 665 GMDESKGRLIVLHGPS 680
G+ L VL P
Sbjct: 203 GISFHSAWLTVLPAPG 218
Score = 33.9 bits (76), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 37/76 (48%), Gaps = 10/76 (13%)
Query: 210 NDITLSCYAGGYPNPSYEWFK--EDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVE 267
N + C AGG P P+ W K +++ Q+ + + ++ ++L I +
Sbjct: 27 NTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGY--KVRNQHWSL------IMESVVPS 78
Query: 268 DRGSYHCKASNKFGSI 283
D+G+Y C N++GSI
Sbjct: 79 DKGNYTCVVENEYGSI 94
Score = 32.0 bits (71), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 33/155 (21%), Positives = 49/155 (31%), Gaps = 23/155 (14%)
Query: 352 ALYFSALEQIDAGNYSCNVQSKVSDTGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPEAP 411
+L ++ D GNY+C V+++ ++ H Q P N
Sbjct: 69 SLIMESVVPSDKGNYTCVVENEYGSINHTYHLDVVERSRHRPILQAGLPANASTVV---- 124
Query: 412 KAGDKVRLECVAFGYPVPSYNWTRR-----------GSPLPRNAYFENFN------RILT 454
G V C + P W + G P + N +L
Sbjct: 125 --GGDVEFVCKVYSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKAAGVNTTDKEIEVLY 182
Query: 455 IPNVKVEDQGEYICRASNDRSALESSVTISIQAEP 489
I NV ED GEY C A N S +++ P
Sbjct: 183 IRNVTFEDAGEYTCLAGNSIGISFHSAWLTVLPAP 217
>pdb|3GRW|A Chain A, Fgfr3 In Complex With A Fab
Length = 241
Score = 47.0 bits (110), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 48/196 (24%), Positives = 75/196 (38%), Gaps = 29/196 (14%)
Query: 510 CEAFGVPDVTYSWFRNGELLNSE----TLPLEDQDRYFIQDNVLTIRYLNPERDPAMYQC 565
C A G P + SW +NG E + L Q + ++V+ D Y C
Sbjct: 37 CPAAGNPTPSISWLKNGREFRGEHRIGGIKLRHQQWSLVMESVVP-------SDRGNYTC 89
Query: 566 RAKNQLKTRYSSAQLRVLTLKPS--FKKRPLESETYAGEGGNVTIFCNPEAAPKPKFVWK 623
+N+ + + L VL P + L + A G +V C + +P W
Sbjct: 90 VVENKFGSIRQTYTLDVLERSPHRPILQAGLPANQTAVLGSDVEFHCKVYSDAQPHIQWL 149
Query: 624 K----DGNIIGSGG-----------RRKIFENGNLLISPVSRDDSGIYSCTATNVHGMDE 668
K +G+ +G G + + L ++ VS D G Y C ATN G+ E
Sbjct: 150 KHVEVNGSKVGPDGTPYVTVLKSWISESVEADVRLRLANVSERDGGEYLCRATNFIGVAE 209
Query: 669 SKGRLIVLHGPSYYEQ 684
K + +HGP E+
Sbjct: 210 -KAFWLSVHGPRAAEE 224
Score = 44.3 bits (103), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 46/194 (23%), Positives = 72/194 (37%), Gaps = 31/194 (15%)
Query: 400 PNNFPKTFPEAPKAGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYFENFNRI------- 452
P K P A + VR C A G P PS +W + G F +RI
Sbjct: 17 PERMDKKLLAVP-AANTVRFRCPAAGNPTPSISWLKNGRE------FRGEHRIGGIKLRH 69
Query: 453 ----LTIPNVKVEDQGEYICRASNDRSALESSVTISIQAEPNFTIPLTDKHMDNQ----- 503
L + +V D+G Y C N ++ + T+ + L NQ
Sbjct: 70 QQWSLVMESVVPSDRGNYTCVVENKFGSIRQTYTLDVLERSPHRPILQAGLPANQTAVLG 129
Query: 504 ADLTWTCEAFGVPDVTYSWFR----NGELLNSETLPLEDQDRYFIQDNV---LTIRYLN- 555
+D+ + C+ + W + NG + + P + +I ++V + +R N
Sbjct: 130 SDVEFHCKVYSDAQPHIQWLKHVEVNGSKVGPDGTPYVTVLKSWISESVEADVRLRLANV 189
Query: 556 PERDPAMYQCRAKN 569
ERD Y CRA N
Sbjct: 190 SERDGGEYLCRATN 203
Score = 40.4 bits (93), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 35/152 (23%), Positives = 57/152 (37%), Gaps = 22/152 (14%)
Query: 352 ALYFSALEQIDAGNYSCNVQSKVSDTGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPEAP 411
+L ++ D GNY+C V++K + L+ PH Q P N
Sbjct: 73 SLVMESVVPSDRGNYTCVVENKFGSIRQTYTLDVLERSPHRPILQAGLPANQTAVL---- 128
Query: 412 KAGDKVRLECVAFGYPVPSYNWTRR-----------GSP---LPRNAYFENF--NRILTI 455
G V C + P W + G+P + ++ E+ + L +
Sbjct: 129 --GSDVEFHCKVYSDAQPHIQWLKHVEVNGSKVGPDGTPYVTVLKSWISESVEADVRLRL 186
Query: 456 PNVKVEDQGEYICRASNDRSALESSVTISIQA 487
NV D GEY+CRA+N E + +S+
Sbjct: 187 ANVSERDGGEYLCRATNFIGVAEKAFWLSVHG 218
Score = 37.7 bits (86), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 44/189 (23%), Positives = 71/189 (37%), Gaps = 20/189 (10%)
Query: 594 LESETYAGEGGNVTIFCNPEAA-PKPKFVWKKDGNIIGS----GGRRKIFENGNLLISPV 648
++ + A N F P A P P W K+G GG + + +L++ V
Sbjct: 20 MDKKLLAVPAANTVRFRCPAAGNPTPSISWLKNGREFRGEHRIGGIKLRHQQWSLVMESV 79
Query: 649 SRDDSGIYSCTATNVHGMDESKGRLIVL----HGPSYYEQLPPKITIAAHRNLQLRCSAH 704
D G Y+C N G L VL H P LP T +++ C +
Sbjct: 80 VPSDRGNYTCVVENKFGSIRQTYTLDVLERSPHRPILQAGLPANQTAVLGSDVEFHCKVY 139
Query: 705 TEELLDVAYIWTH---NGVRIGN------MDLNELETPNINIDGGLLEITNASFADAGEY 755
++ + ++ H NG ++G L + ++ D L + N S D GEY
Sbjct: 140 SDAQPHIQWL-KHVEVNGSKVGPDGTPYVTVLKSWISESVEADV-RLRLANVSERDGGEY 197
Query: 756 ECVVKSTVG 764
C + +G
Sbjct: 198 LCRATNFIG 206
Score = 37.0 bits (84), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 37/76 (48%), Gaps = 10/76 (13%)
Query: 210 NDITLSCYAGGYPNPSYEWFK--EDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVE 267
N + C A G P PS W K ++ + + + L ++++L +++ +D
Sbjct: 31 NTVRFRCPAAGNPTPSISWLKNGREFRGEHRIGGI--KLRHQQWSLVMESVVPSD----- 83
Query: 268 DRGSYHCKASNKFGSI 283
RG+Y C NKFGSI
Sbjct: 84 -RGNYTCVVENKFGSI 98
>pdb|1RY7|B Chain B, Crystal Structure Of The 3 Ig Form Of Fgfr3c In Complex
With Fgf1
Length = 334
Score = 47.0 bits (110), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 47/189 (24%), Positives = 76/189 (40%), Gaps = 19/189 (10%)
Query: 594 LESETYAGEGGNVTIFCNPEAA-PKPKFVWKKDGNIIGS----GGRRKIFENGNLLISPV 648
++ + A N F P A P P W K+G GG + + +L++ V
Sbjct: 128 MDKKLLAVPAANTVRFRCPAAGNPTPSISWLKNGREFRGEHRIGGIKLRHQQWSLVMESV 187
Query: 649 SRDDSGIYSCTATNVHGMDESKGRLIVL----HGPSYYEQLPPKITIAAHRNLQLRCSAH 704
D G Y+C N G L VL H P LP T +++ C +
Sbjct: 188 VPSDRGNYTCVVENKFGSIRQTYTLDVLERSPHRPILQAGLPANQTAVLGSDVEFHCKVY 247
Query: 705 TEELLDVAYIWTH---NGVRIGNMD---LNELETPNINIDGGLLEIT---NASFADAGEY 755
++ + ++ H NG ++G + L+T N LE+ N +F DAGEY
Sbjct: 248 SDAQPHIQWL-KHVEVNGSKVGPDGTPYVTVLKTAGANTTDKELEVLSLHNVTFEDAGEY 306
Query: 756 ECVVKSTVG 764
C+ +++G
Sbjct: 307 TCLAGNSIG 315
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 69/315 (21%), Positives = 105/315 (33%), Gaps = 61/315 (19%)
Query: 413 AGDKVRLECVAFGYPVPSYN-WTRRGSPLPRNAYFENFNRILTIPNVKVEDQGEYICRAS 471
+GD V L C G W + G+ L + + L + N ED G Y CR
Sbjct: 22 SGDAVELSCPPPGGGPMGPTVWVKDGTGLVPSERVLVGPQRLQVLNASHEDSGAYSCRQR 81
Query: 472 -NDRSALESSVTISIQ--------------------AEPNFTIPLTDKHMDNQA------ 504
R SV ++ P +T P + MD +
Sbjct: 82 LTQRVLCHFSVRVTDAPSSGDDEDGEDEAEDTGVDTGAPYWTRP---ERMDKKLLAVPAA 138
Query: 505 -DLTWTCEAFGVPDVTYSWFRNGELLNSE----TLPLEDQDRYFIQDNVLTIRYLNPERD 559
+ + C A G P + SW +NG E + L Q + ++V+ D
Sbjct: 139 NTVRFRCPAAGNPTPSISWLKNGREFRGEHRIGGIKLRHQQWSLVMESVV-------PSD 191
Query: 560 PAMYQCRAKNQLKTRYSSAQLRVLTLKPS--FKKRPLESETYAGEGGNVTIFCNPEAAPK 617
Y C +N+ + + L VL P + L + A G +V C + +
Sbjct: 192 RGNYTCVVENKFGSIRQTYTLDVLERSPHRPILQAGLPANQTAVLGSDVEFHCKVYSDAQ 251
Query: 618 PKFVWKKDGNIIGS----------------GGRRKIFENGNLLISPVSRDDSGIYSCTAT 661
P W K + GS G E L + V+ +D+G Y+C A
Sbjct: 252 PHIQWLKHVEVNGSKVGPDGTPYVTVLKTAGANTTDKELEVLSLHNVTFEDAGEYTCLAG 311
Query: 662 NVHGMDESKGRLIVL 676
N G L+VL
Sbjct: 312 NSIGFSHHSAWLVVL 326
Score = 40.4 bits (93), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 49/212 (23%), Positives = 76/212 (35%), Gaps = 38/212 (17%)
Query: 400 PNNFPKTFPEAPKAGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYFENFNRI------- 452
P K P A + VR C A G P PS +W + G F +RI
Sbjct: 125 PERMDKKLLAVP-AANTVRFRCPAAGNPTPSISWLKNGR------EFRGEHRIGGIKLRH 177
Query: 453 ----LTIPNVKVEDQGEYICRASNDRSALESSVTISIQAEPNFTIPLTDKHMDNQ----- 503
L + +V D+G Y C N ++ + T+ + L NQ
Sbjct: 178 QQWSLVMESVVPSDRGNYTCVVENKFGSIRQTYTLDVLERSPHRPILQAGLPANQTAVLG 237
Query: 504 ADLTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFI------------QDNVLTI 551
+D+ + C+ + W ++ E+ S+ P D Y + VL++
Sbjct: 238 SDVEFHCKVYSDAQPHIQWLKHVEVNGSKVGP--DGTPYVTVLKTAGANTTDKELEVLSL 295
Query: 552 RYLNPERDPAMYQCRAKNQLKTRYSSAQLRVL 583
+ E D Y C A N + + SA L VL
Sbjct: 296 HNVTFE-DAGEYTCLAGNSIGFSHHSAWLVVL 326
Score = 40.4 bits (93), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 33/138 (23%), Positives = 52/138 (37%), Gaps = 23/138 (16%)
Query: 352 ALYFSALEQIDAGNYSCNVQSKVSDTGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPEAP 411
+L ++ D GNY+C V++K + L+ PH Q P N +
Sbjct: 181 SLVMESVVPSDRGNYTCVVENKFGSIRQTYTLDVLERSPHRPILQAGLPAN------QTA 234
Query: 412 KAGDKVRLECVAFGYPVPSYNWTRR-----------GSP---LPRNAYFENFNR---ILT 454
G V C + P W + G+P + + A ++ +L+
Sbjct: 235 VLGSDVEFHCKVYSDAQPHIQWLKHVEVNGSKVGPDGTPYVTVLKTAGANTTDKELEVLS 294
Query: 455 IPNVKVEDQGEYICRASN 472
+ NV ED GEY C A N
Sbjct: 295 LHNVTFEDAGEYTCLAGN 312
Score = 37.0 bits (84), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 37/76 (48%), Gaps = 10/76 (13%)
Query: 210 NDITLSCYAGGYPNPSYEWFK--EDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVE 267
N + C A G P PS W K ++ + + + L ++++L +++ +D
Sbjct: 139 NTVRFRCPAAGNPTPSISWLKNGREFRGEHRIGGI--KLRHQQWSLVMESVVPSD----- 191
Query: 268 DRGSYHCKASNKFGSI 283
RG+Y C NKFGSI
Sbjct: 192 -RGNYTCVVENKFGSI 206
>pdb|3PUC|A Chain A, Atomic Resolution Structure Of Titin Domain M7
Length = 99
Score = 46.2 bits (108), Expect = 9e-05, Method: Composition-based stats.
Identities = 23/63 (36%), Positives = 32/63 (50%), Gaps = 3/63 (4%)
Query: 616 PKPKFVWKKDGNIIGSGGRRKIFENGN---LLISPVSRDDSGIYSCTATNVHGMDESKGR 672
P+P +W KDG I GG+ K+ E+ L I DSG+Y+CT N G S +
Sbjct: 34 PRPTAIWTKDGKAITQGGKYKLSEDKGGFFLEIHKTDTSDSGLYTCTVKNSAGSVSSSCK 93
Query: 673 LIV 675
L +
Sbjct: 94 LTI 96
Score = 32.3 bits (72), Expect = 1.3, Method: Composition-based stats.
Identities = 20/58 (34%), Positives = 29/58 (50%), Gaps = 9/58 (15%)
Query: 714 IWTHNGVRI---GNMDLNELETPNINIDGGLLEITNASFADAGEYECVVKSTVGKIST 768
IWT +G I G L+E + G LEI +D+G Y C VK++ G +S+
Sbjct: 39 IWTKDGKAITQGGKYKLSE------DKGGFFLEIHKTDTSDSGLYTCTVKNSAGSVSS 90
Score = 32.0 bits (71), Expect = 1.5, Method: Composition-based stats.
Identities = 18/69 (26%), Positives = 29/69 (42%), Gaps = 4/69 (5%)
Query: 423 AFGYPVPSYNWTRRGSPLPRNAYF----ENFNRILTIPNVKVEDQGEYICRASNDRSALE 478
A G P P+ WT+ G + + + + L I D G Y C N ++
Sbjct: 30 ATGEPRPTAIWTKDGKAITQGGKYKLSEDKGGFFLEIHKTDTSDSGLYTCTVKNSAGSVS 89
Query: 479 SSVTISIQA 487
SS ++I+A
Sbjct: 90 SSCKLTIKA 98
>pdb|4FOM|A Chain A, Crystal Structure Of Human Nectin-3 Full Ectodomain
(D1-D3)
Length = 308
Score = 45.8 bits (107), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 64/265 (24%), Positives = 109/265 (41%), Gaps = 27/265 (10%)
Query: 429 PSYNWTRRGSPLPRNAYFENF---NRILTIPNVKVEDQGEYICRASN-DRSALESSVTIS 484
P Y ++ +G R F+N+ + +T+ N+ D G+YIC+A +SS T++
Sbjct: 50 PQYGFSVQGEYQGR-VLFKNYSLNDATITLHNIGFSDSGKYICKAVTFPLGNAQSSTTVT 108
Query: 485 IQAEPNFT-IPLTDKHMD--NQADLTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDR 541
+ EP + I D +D N+ A G P W + + S T ++
Sbjct: 109 VLVEPTVSLIKGPDSLIDGGNETVAAICIAATGKPVAHIDWEGDLGEMESTTTSFPNETA 168
Query: 542 YFI-QDNVLTIRYLNPERDPAMYQCRAKNQLKTRYSSAQLRVLTLKPSFKKRPLESETYA 600
I Q + R+ R + + A + RYS + + P + +
Sbjct: 169 TIISQYKLFPTRFARGRRITCVVKHPALEK-DIRYSF--ILDIQYAPEVSVTGYDGNWFV 225
Query: 601 GEGGNVTIFCNPEAAPKP-KFVWKK-DG----NIIGSGGRRKIFENGNLLISPVSRDDSG 654
G G V + CN +A P P K VW + DG ++ S +N + P++ + SG
Sbjct: 226 GRKG-VNLKCNADANPPPFKSVWSRLDGQWPDGLLAS-------DNTLHFVHPLTFNYSG 277
Query: 655 IYSCTATNVHGMDESKGRLIVLHGP 679
+Y C TN G S ++I + P
Sbjct: 278 VYICKVTNSLG-QRSDQKVIYISDP 301
>pdb|2WV3|A Chain A, Neuroplastin-55 Binds To And Signals Through The
Fibroblast Growth Factor Receptor
Length = 190
Score = 45.8 bits (107), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 48/162 (29%), Positives = 72/162 (44%), Gaps = 24/162 (14%)
Query: 433 WTRRGSPLP---RNAYFENFNRILTIPNVKVEDQGEYICRASNDRSALESSVTISIQAEP 489
WT+ G L +NA N I + ED GEY C + SA +++ TI ++A P
Sbjct: 39 WTKNGVELTATRKNA----SNMEYRINKPRAEDSGEYHC-VYHFVSAPKANATIEVKAAP 93
Query: 490 NFTIPLTDKHMDNQADLTWTCEAFGVPDVTYSWFR--NG---ELLNSETLPLEDQDRYFI 544
+ T ++ + D C++ G P + W + NG E+ NS R+FI
Sbjct: 94 DITGHKRSENKNEGQDAMMYCKSVGYPHPEWMWRKKENGVFEEISNS-------SGRFFI 146
Query: 545 --QDNV--LTIRYLNPERDPAMYQCRAKNQLKTRYSSAQLRV 582
++N L I L DP Y+C A N + + S LRV
Sbjct: 147 INKENYTELNIVNLQITEDPGEYECNATNSIGSASVSTVLRV 188
Score = 35.8 bits (81), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 36/75 (48%), Gaps = 7/75 (9%)
Query: 211 DITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGN---LIINDPRQVE 267
D + C + GYP+P + W K ++ V I S + F ++ N L I + + E
Sbjct: 109 DAMMYCKSVGYPHPEWMWRK----KENGVFEEISNSSGRFFIINKENYTELNIVNLQITE 164
Query: 268 DRGSYHCKASNKFGS 282
D G Y C A+N GS
Sbjct: 165 DPGEYECNATNSIGS 179
Score = 33.9 bits (76), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 33/73 (45%), Gaps = 9/73 (12%)
Query: 602 EGGNVTIFCNPEAAPKPKFVWKKDGN-----IIGSGGRRKIFENGNL----LISPVSRDD 652
EG + ++C P P+++W+K N I S GR I N +++ +D
Sbjct: 106 EGQDAMMYCKSVGYPHPEWMWRKKENGVFEEISNSSGRFFIINKENYTELNIVNLQITED 165
Query: 653 SGIYSCTATNVHG 665
G Y C ATN G
Sbjct: 166 PGEYECNATNSIG 178
Score = 32.3 bits (72), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 23/90 (25%), Positives = 40/90 (44%), Gaps = 12/90 (13%)
Query: 409 EAPKAGDKVRLECVAFGYPVPSYNWTRRGSPL------PRNAYF----ENFNRILTIPNV 458
E G + C + GYP P + W ++ + + +F EN+ L I N+
Sbjct: 102 ENKNEGQDAMMYCKSVGYPHPEWMWRKKENGVFEEISNSSGRFFIINKENYTE-LNIVNL 160
Query: 459 KV-EDQGEYICRASNDRSALESSVTISIQA 487
++ ED GEY C A+N + S + ++
Sbjct: 161 QITEDPGEYECNATNSIGSASVSTVLRVRV 190
>pdb|3OJM|B Chain B, Crystal Structure Of Fgf1 Complexed With The Ectodomain Of
Fgfr2b Harboring P253r Apert Mutation
Length = 231
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 46/187 (24%), Positives = 75/187 (40%), Gaps = 15/187 (8%)
Query: 594 LESETYAGEGGNVTIF-CNPEAAPKPKFVWKKDGNIIGS----GGRRKIFENGNLLISPV 648
+E +A N F C P P W K+G GG + ++ +L++ V
Sbjct: 24 MEKRLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESV 83
Query: 649 SRDDSGIYSCTATNVHGMDESKGRLIVL----HGPSYYEQLPPKITIAAHRNLQLRCSAH 704
D G Y+C N +G L V+ H P LP + +++ C +
Sbjct: 84 VPSDKGNYTCVVENEYGSINHTYHLDVVERSRHRPILQAGLPANASTVVGGDVEFVCKVY 143
Query: 705 TEELLDVAYI--WTHNGVRIGNMDL---NELETPNINIDGG-LLEITNASFADAGEYECV 758
++ + +I NG + G L L+ IN +L + N + ADAGEY C
Sbjct: 144 SDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKHSGINSSNAEVLALFNVTEADAGEYICK 203
Query: 759 VKSTVGK 765
V + +G+
Sbjct: 204 VSNYIGQ 210
Score = 38.1 bits (87), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 39/189 (20%), Positives = 69/189 (36%), Gaps = 19/189 (10%)
Query: 413 AGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYF-----ENFNRILTIPNVKVEDQGEYI 467
A + V+ C A G P+P+ W + G + N + L + +V D+G Y
Sbjct: 33 AANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYT 92
Query: 468 CRASNDRSALESSVTISIQAEPNFTIPLTDKHMDNQA------DLTWTCEAFGVPDVTYS 521
C N+ ++ + + + E + P+ + A D+ + C+ +
Sbjct: 93 CVVENEYGSINHTYHLDV-VERSRHRPILQAGLPANASTVVGGDVEFVCKVYSDAQPHIQ 151
Query: 522 WF----RNGELLNSETLPLEDQDRY--FIQDNVLTIRYLN-PERDPAMYQCRAKNQLKTR 574
W +NG + LP ++ N + N E D Y C+ N +
Sbjct: 152 WIKHVEKNGSKYGPDGLPYLKVLKHSGINSSNAEVLALFNVTEADAGEYICKVSNYIGQA 211
Query: 575 YSSAQLRVL 583
SA L VL
Sbjct: 212 NQSAWLTVL 220
Score = 34.3 bits (77), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 43/194 (22%), Positives = 72/194 (37%), Gaps = 33/194 (17%)
Query: 506 LTWTCEAFGVPDVTYSWFRNGELLNSE----TLPLEDQDRYFIQDNVLTIRYLNPERDPA 561
+ + C A G P T W +NG+ E + +Q I ++V+ D
Sbjct: 37 VKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVP-------SDKG 89
Query: 562 MYQCRAKNQLKTRYSSAQLRVLTLKPSFKKRP-----LESETYAGEGGNVTIFCNPEAAP 616
Y C +N+ + + L V+ + RP L + GG+V C +
Sbjct: 90 NYTCVVENEYGSINHTYHLDVVERS---RHRPILQAGLPANASTVVGGDVEFVCKVYSDA 146
Query: 617 KPKFVW----KKDGNIIGSGGR--RKIFENGN--------LLISPVSRDDSGIYSCTATN 662
+P W +K+G+ G G K+ ++ L + V+ D+G Y C +N
Sbjct: 147 QPHIQWIKHVEKNGSKYGPDGLPYLKVLKHSGINSSNAEVLALFNVTEADAGEYICKVSN 206
Query: 663 VHGMDESKGRLIVL 676
G L VL
Sbjct: 207 YIGQANQSAWLTVL 220
Score = 33.9 bits (76), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 37/76 (48%), Gaps = 10/76 (13%)
Query: 210 NDITLSCYAGGYPNPSYEWFK--EDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVE 267
N + C AGG P P+ W K +++ Q+ + + ++ ++L I +
Sbjct: 35 NTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGY--KVRNQHWSL------IMESVVPS 86
Query: 268 DRGSYHCKASNKFGSI 283
D+G+Y C N++GSI
Sbjct: 87 DKGNYTCVVENEYGSI 102
Score = 33.5 bits (75), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 30/136 (22%), Positives = 45/136 (33%), Gaps = 21/136 (15%)
Query: 352 ALYFSALEQIDAGNYSCNVQSKVSDTGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPEAP 411
+L ++ D GNY+C V+++ ++ H Q P N
Sbjct: 77 SLIMESVVPSDKGNYTCVVENEYGSINHTYHLDVVERSRHRPILQAGLPANASTVV---- 132
Query: 412 KAGDKVRLECVAFGYPVPSYNWTRR-----------GSPLPRNAYFENFN----RILTIP 456
G V C + P W + G P + N +L +
Sbjct: 133 --GGDVEFVCKVYSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKHSGINSSNAEVLALF 190
Query: 457 NVKVEDQGEYICRASN 472
NV D GEYIC+ SN
Sbjct: 191 NVTEADAGEYICKVSN 206
>pdb|2RCJ|C Chain C, Solution Structure Of Human Immunoglobulin M
pdb|2RCJ|D Chain D, Solution Structure Of Human Immunoglobulin M
pdb|2RCJ|G Chain G, Solution Structure Of Human Immunoglobulin M
pdb|2RCJ|H Chain H, Solution Structure Of Human Immunoglobulin M
pdb|2RCJ|K Chain K, Solution Structure Of Human Immunoglobulin M
pdb|2RCJ|L Chain L, Solution Structure Of Human Immunoglobulin M
pdb|2RCJ|O Chain O, Solution Structure Of Human Immunoglobulin M
pdb|2RCJ|P Chain P, Solution Structure Of Human Immunoglobulin M
pdb|2RCJ|S Chain S, Solution Structure Of Human Immunoglobulin M
pdb|2RCJ|T Chain T, Solution Structure Of Human Immunoglobulin M
Length = 523
Score = 45.1 bits (105), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 90/406 (22%), Positives = 139/406 (34%), Gaps = 78/406 (19%)
Query: 196 PTDVVFDLSKRSI-LNDITLSCYAGG-YPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTL 253
PT +F S + N TL C YP +K D + P
Sbjct: 115 PTVTLFPPSSEELQANKATLVCLISDFYPGAVTVAWKADGSPVKAGVETTKPSKQSNNKY 174
Query: 254 SGGNLIINDPRQVEDRGSYHCKASNKFGSIISESV---QLAFGFIGEFNLKRAPEIGNQN 310
+ + + P Q + SY C+ +++ GS + ++V + + G AP + +
Sbjct: 175 AASSYLSLTPEQWKSHRSYSCQVTHE-GSTVEKTVAPTECSASTKGPSVFPLAPSSKSTS 233
Query: 311 WGKAMF-CDPPTNYPGVNYYWARDYFPNFVEEDKRVFVSYDGALYFSALEQIDA------ 363
G A C +DYFP V G F A+ Q
Sbjct: 234 GGTAALGC------------LVKDYFPQPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSS 281
Query: 364 -----------GNYSCNVQSKVSDTGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPEAPK 412
Y CNV K S+T + PL + P F PK
Sbjct: 282 VVTVPSSSLGTQTYICNVNHKPSNTKVDKRVEPL---------------SLPSVFLFPPK 326
Query: 413 AGDKVRLE------CVAFGY----PVPSYNWTRRGSPL------PRNAYFENFNRILTIP 456
D + + CV P +NW G + PR + + R++++
Sbjct: 327 PKDTLMISRTPEVTCVVVDVSHEDPQVKFNWYVDGVQVHNAKTKPREQQYNSTYRVVSVL 386
Query: 457 NVKVE---DQGEYICRASNDRSALESSVTIS-IQAEPN----FTIPLTDKHM-DNQADLT 507
V + D EY C+ SN TIS + +P +T+P + + M NQ LT
Sbjct: 387 TVLHQNWLDGKEYKCKVSNKALPAPIEKTISKAKGQPREPQVYTLPPSREEMTKNQVSLT 446
Query: 508 WTCEAFGVPDVTYSWFRNGELLNS--ETLPLEDQDRYFIQDNVLTI 551
+ F D+ W NG+ N+ T P+ D D F + LT+
Sbjct: 447 CLVKGFYPSDIAVEWESNGQPENNYKTTPPVLDSDGSFFLYSKLTV 492
Score = 34.7 bits (78), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 73/337 (21%), Positives = 132/337 (39%), Gaps = 35/337 (10%)
Query: 453 LTIPNVKVEDQGEYICRA--SNDRS---ALESSVTISIQAEPNFTI----PLTDKHMDNQ 503
L I ++ ED+ +Y C + S+D S + VT+ Q + N T+ P +++ N+
Sbjct: 72 LAISGLEAEDESDYYCASWNSSDNSYVFGTGTKVTVLGQPKANPTVTLFPPSSEELQANK 131
Query: 504 ADLTWTCEAFGVPDVTYSWFRNGELLNS---ETLPLEDQDRYFIQDNVLTIRYLNPE--R 558
A L F VT +W +G + + T P + + + + L+ L PE +
Sbjct: 132 ATLVCLISDFYPGAVTVAWKADGSPVKAGVETTKPSKQSNNKYAASSYLS---LTPEQWK 188
Query: 559 DPAMYQCRAKNQLKT---RYSSAQLRVLTLKPSFKKRPLESETYAGEGGNVTIFC-NPEA 614
Y C+ ++ T + + T PS PL + + GG + C +
Sbjct: 189 SHRSYSCQVTHEGSTVEKTVAPTECSASTKGPSV--FPLAPSSKSTSGGTAALGCLVKDY 246
Query: 615 APKPKFV-WKKDGNIIGSGGRRKIFENGNL------LISPVSRDDSGIYSCTATNVHGMD 667
P+P V W G + ++ L + P S + Y C +
Sbjct: 247 FPQPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNT 306
Query: 668 ESKGRLIVLHGPSYYEQLP-PKITIAAHRNLQLRCSA--HTEELLDVAYIWTHNGVRIGN 724
+ R+ L PS + P PK T+ R ++ C + E V + W +GV++ N
Sbjct: 307 KVDKRVEPLSLPSVFLFPPKPKDTLMISRTPEVTCVVVDVSHEDPQVKFNWYVDGVQVHN 366
Query: 725 MDLN--ELETPNINIDGGLLEITNASFADAGEYECVV 759
E + + +L + + ++ D EY+C V
Sbjct: 367 AKTKPREQQYNSTYRVVSVLTVLHQNWLDGKEYKCKV 403
>pdb|1DJS|A Chain A, Ligand-binding Portion Of Fibroblast Growth Factor
Receptor 2 In Complex With Fgf1
Length = 216
Score = 45.1 bits (105), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 45/187 (24%), Positives = 73/187 (39%), Gaps = 17/187 (9%)
Query: 595 ESETYAGEGGNVTIF-CNPEAAPKPKFVWKKDGNIIGS----GGRRKIFENGNLLISPVS 649
E +A N F C P P W K+G GG + ++ +L+ V
Sbjct: 17 EKRLHAVPAANTVKFRCPAGGNPXPTXRWLKNGKEFKQEHRIGGYKVRNQHWSLIXESVV 76
Query: 650 RDDSGIYSCTATNVHGMDESKGRLIVL----HGPSYYEQLPPKITIAAHRNLQLRCSAHT 705
D G Y+C N +G L V+ H P LP + +++ C ++
Sbjct: 77 PSDKGNYTCVVENEYGSINHTYHLDVVERSPHRPILQAGLPANASTVVGGDVEFVCKVYS 136
Query: 706 EELLDVAYI--WTHNGVRIGNMDL---NELETPNINIDGGLLE---ITNASFADAGEYEC 757
+ + +I NG + G L L+ +N +E I N +F DAGEY C
Sbjct: 137 DAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKAAGVNTTDKEIEVLYIRNVTFEDAGEYTC 196
Query: 758 VVKSTVG 764
+ +++G
Sbjct: 197 LAGNSIG 203
Score = 39.3 bits (90), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 44/199 (22%), Positives = 73/199 (36%), Gaps = 29/199 (14%)
Query: 409 EAPKAGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYF-----ENFNRILTIPNVKVEDQ 463
A A + V+ C A G P P+ W + G + N + L +V D+
Sbjct: 21 HAVPAANTVKFRCPAGGNPXPTXRWLKNGKEFKQEHRIGGYKVRNQHWSLIXESVVPSDK 80
Query: 464 GEYICRASNDRSALESSVTISIQAEPNFTIPLTDKHMDNQA------DLTWTCEAFGVPD 517
G Y C N+ ++ + + + E + P+ + A D+ + C+ +
Sbjct: 81 GNYTCVVENEYGSINHTYHLDV-VERSPHRPILQAGLPANASTVVGGDVEFVCKVYSDAQ 139
Query: 518 VTYSWF----RNGELLNSETLP---------LEDQDRYFIQDNVLTIRYLNPERDPAMYQ 564
W +NG + LP + D+ + VL IR + E D Y
Sbjct: 140 PHIQWIKHVEKNGSKYGPDGLPYLKVLKAAGVNTTDK---EIEVLYIRNVTFE-DAGEYT 195
Query: 565 CRAKNQLKTRYSSAQLRVL 583
C A N + + SA L VL
Sbjct: 196 CLAGNSIGISFHSAWLTVL 214
Score = 39.3 bits (90), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 44/189 (23%), Positives = 71/189 (37%), Gaps = 29/189 (15%)
Query: 510 CEAFGVPDVTYSWFRNGELLNSE----TLPLEDQDRYFIQDNVLTIRYLNPERDPAMYQC 565
C A G P T W +NG+ E + +Q I ++V+ D Y C
Sbjct: 33 CPAGGNPXPTXRWLKNGKEFKQEHRIGGYKVRNQHWSLIXESVVP-------SDKGNYTC 85
Query: 566 RAKNQLKTRYSSAQLRVLTLKPS--FKKRPLESETYAGEGGNVTIFCNPEAAPKPKFVW- 622
+N+ + + L V+ P + L + GG+V C + +P W
Sbjct: 86 VVENEYGSINHTYHLDVVERSPHRPILQAGLPANASTVVGGDVEFVCKVYSDAQPHIQWI 145
Query: 623 ---KKDGNIIGSGGR--RKIFENGN----------LLISPVSRDDSGIYSCTATNVHGMD 667
+K+G+ G G K+ + L I V+ +D+G Y+C A N G+
Sbjct: 146 KHVEKNGSKYGPDGLPYLKVLKAAGVNTTDKEIEVLYIRNVTFEDAGEYTCLAGNSIGIS 205
Query: 668 ESKGRLIVL 676
L VL
Sbjct: 206 FHSAWLTVL 214
Score = 35.4 bits (80), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 31/128 (24%), Positives = 41/128 (32%), Gaps = 23/128 (17%)
Query: 362 DAGNYSCNVQSKVSDTGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPEAPKAGDKVRLEC 421
D GNY+C V+++ ++ PH Q P N G V C
Sbjct: 79 DKGNYTCVVENEYGSINHTYHLDVVERSPHRPILQAGLPANASTVV------GGDVEFVC 132
Query: 422 VAFGYPVPSYNWTRR-----------GSPLPRNAYFENFN------RILTIPNVKVEDQG 464
+ P W + G P + N +L I NV ED G
Sbjct: 133 KVYSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKAAGVNTTDKEIEVLYIRNVTFEDAG 192
Query: 465 EYICRASN 472
EY C A N
Sbjct: 193 EYTCLAGN 200
Score = 34.7 bits (78), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 37/76 (48%), Gaps = 10/76 (13%)
Query: 210 NDITLSCYAGGYPNPSYEWFK--EDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVE 267
N + C AGG P P+ W K +++ Q+ + + ++ ++L I +
Sbjct: 27 NTVKFRCPAGGNPXPTXRWLKNGKEFKQEHRIGGY--KVRNQHWSL------IXESVVPS 78
Query: 268 DRGSYHCKASNKFGSI 283
D+G+Y C N++GSI
Sbjct: 79 DKGNYTCVVENEYGSI 94
>pdb|3OJ2|C Chain C, Crystal Structure Of Fgf1 Complexed With The Ectodomain Of
Fgfr2b Harboring The A172f Pfeiffer Syndrome Mutation
pdb|3OJ2|D Chain D, Crystal Structure Of Fgf1 Complexed With The Ectodomain Of
Fgfr2b Harboring The A172f Pfeiffer Syndrome Mutation
Length = 231
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 46/187 (24%), Positives = 75/187 (40%), Gaps = 15/187 (8%)
Query: 594 LESETYAGEGGNVTIF-CNPEAAPKPKFVWKKDGNIIGS----GGRRKIFENGNLLISPV 648
+E +A N F C P P W K+G GG + ++ +L++ V
Sbjct: 24 MEKRLHAVPAFNTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESV 83
Query: 649 SRDDSGIYSCTATNVHGMDESKGRLIVL----HGPSYYEQLPPKITIAAHRNLQLRCSAH 704
D G Y+C N +G L V+ H P LP + +++ C +
Sbjct: 84 VPSDKGNYTCVVENEYGSINHTYHLDVVERSPHRPILQAGLPANASTVVGGDVEFVCKVY 143
Query: 705 TEELLDVAYI--WTHNGVRIGNMDL---NELETPNINIDGG-LLEITNASFADAGEYECV 758
++ + +I NG + G L L+ IN +L + N + ADAGEY C
Sbjct: 144 SDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKHSGINSSNAEVLALFNVTEADAGEYICK 203
Query: 759 VKSTVGK 765
V + +G+
Sbjct: 204 VSNYIGQ 210
Score = 37.0 bits (84), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 42/191 (21%), Positives = 71/191 (37%), Gaps = 27/191 (14%)
Query: 506 LTWTCEAFGVPDVTYSWFRNGELLNSE----TLPLEDQDRYFIQDNVLTIRYLNPERDPA 561
+ + C A G P T W +NG+ E + +Q I ++V+ D
Sbjct: 37 VKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVP-------SDKG 89
Query: 562 MYQCRAKNQLKTRYSSAQLRVLTLKPS--FKKRPLESETYAGEGGNVTIFCNPEAAPKPK 619
Y C +N+ + + L V+ P + L + GG+V C + +P
Sbjct: 90 NYTCVVENEYGSINHTYHLDVVERSPHRPILQAGLPANASTVVGGDVEFVCKVYSDAQPH 149
Query: 620 FVW----KKDGNIIGSGGR--RKIFENGN--------LLISPVSRDDSGIYSCTATNVHG 665
W +K+G+ G G K+ ++ L + V+ D+G Y C +N G
Sbjct: 150 IQWIKHVEKNGSKYGPDGLPYLKVLKHSGINSSNAEVLALFNVTEADAGEYICKVSNYIG 209
Query: 666 MDESKGRLIVL 676
L VL
Sbjct: 210 QANQSAWLTVL 220
Score = 37.0 bits (84), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 31/136 (22%), Positives = 46/136 (33%), Gaps = 21/136 (15%)
Query: 352 ALYFSALEQIDAGNYSCNVQSKVSDTGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPEAP 411
+L ++ D GNY+C V+++ ++ PH Q P N
Sbjct: 77 SLIMESVVPSDKGNYTCVVENEYGSINHTYHLDVVERSPHRPILQAGLPANASTVV---- 132
Query: 412 KAGDKVRLECVAFGYPVPSYNWTRR-----------GSPLPRNAYFENFN----RILTIP 456
G V C + P W + G P + N +L +
Sbjct: 133 --GGDVEFVCKVYSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKHSGINSSNAEVLALF 190
Query: 457 NVKVEDQGEYICRASN 472
NV D GEYIC+ SN
Sbjct: 191 NVTEADAGEYICKVSN 206
Score = 36.6 bits (83), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 40/193 (20%), Positives = 70/193 (36%), Gaps = 19/193 (9%)
Query: 409 EAPKAGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYF-----ENFNRILTIPNVKVEDQ 463
A A + V+ C A G P+P+ W + G + N + L + +V D+
Sbjct: 29 HAVPAFNTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDK 88
Query: 464 GEYICRASNDRSALESSVTISIQAEPNFTIPLTDKHMDNQA------DLTWTCEAFGVPD 517
G Y C N+ ++ + + + E + P+ + A D+ + C+ +
Sbjct: 89 GNYTCVVENEYGSINHTYHLDV-VERSPHRPILQAGLPANASTVVGGDVEFVCKVYSDAQ 147
Query: 518 VTYSWF----RNGELLNSETLPLEDQDRY--FIQDNVLTIRYLN-PERDPAMYQCRAKNQ 570
W +NG + LP ++ N + N E D Y C+ N
Sbjct: 148 PHIQWIKHVEKNGSKYGPDGLPYLKVLKHSGINSSNAEVLALFNVTEADAGEYICKVSNY 207
Query: 571 LKTRYSSAQLRVL 583
+ SA L VL
Sbjct: 208 IGQANQSAWLTVL 220
Score = 34.3 bits (77), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 37/77 (48%), Gaps = 10/77 (12%)
Query: 209 LNDITLSCYAGGYPNPSYEWFK--EDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQV 266
N + C AGG P P+ W K +++ Q+ + + ++ ++L I +
Sbjct: 34 FNTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGY--KVRNQHWSL------IMESVVP 85
Query: 267 EDRGSYHCKASNKFGSI 283
D+G+Y C N++GSI
Sbjct: 86 SDKGNYTCVVENEYGSI 102
>pdb|2V9T|A Chain A, Complex Between The Second Lrr Domain Of Slit2 And The
First Ig Domain From Robo1
Length = 117
Score = 44.7 bits (104), Expect = 3e-04, Method: Composition-based stats.
Identities = 31/105 (29%), Positives = 49/105 (46%), Gaps = 13/105 (12%)
Query: 190 PYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDK 249
P ++ P+D++ + + TL+C A G P P+ EW+K +R+ + DP S
Sbjct: 10 PRIVEHPSDLIVSKGEPA-----TLNCKAEGRPTPTIEWYKGG---ERVETDKDDPRS-H 60
Query: 250 RFTLSGGNL----IINDPRQVEDRGSYHCKASNKFGSIISESVQL 290
R L G+L I++ + D G Y C A N G +S L
Sbjct: 61 RMLLPSGSLFFLRIVHGRKSRPDEGVYVCVARNYLGEAVSHDASL 105
Score = 34.7 bits (78), Expect = 0.25, Method: Composition-based stats.
Identities = 26/98 (26%), Positives = 37/98 (37%), Gaps = 12/98 (12%)
Query: 578 AQLRVLTLKPSFKKRPLESETYAGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSG----- 632
LR P + P S+ +G T+ C E P P W K G + +
Sbjct: 1 GSLRQEDFPPRIVEHP--SDLIVSKGEPATLNCKAEGRPTPTIEWYKGGERVETDKDDPR 58
Query: 633 GRRKIFENGNLLISPV-----SRDDSGIYSCTATNVHG 665
R + +G+L + SR D G+Y C A N G
Sbjct: 59 SHRMLLPSGSLFFLRIVHGRKSRPDEGVYVCVARNYLG 96
>pdb|1IE5|A Chain A, Nmr Structure Of The Third Immunoglobulin Domain From The
Neural Cell Adhesion Molecule
Length = 107
Score = 44.3 bits (103), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 36/74 (48%), Gaps = 5/74 (6%)
Query: 417 VRLECVAFGYPVPSYNWTRRGSPLPRNAYFENFN-----RILTIPNVKVEDQGEYICRAS 471
V L C A G+P P+ WT+ G P+ + E ++ L I V D+ EYIC A
Sbjct: 31 VTLACDADGFPEPTMTWTKDGEPIEQEDNEEKYSFNYDGSELIIKKVDKSDEAEYICIAE 90
Query: 472 NDRSALESSVTISI 485
N ++++ + +
Sbjct: 91 NKAGEQDATIHLKV 104
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/99 (25%), Positives = 41/99 (41%), Gaps = 4/99 (4%)
Query: 582 VLTLKPSFKKRPLESETYAGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKI---- 637
++ + PS + R A +VT+ C+ + P+P W KDG I +
Sbjct: 7 IVNVPPSVRARQSTMNATANLSQSVTLACDADGFPEPTMTWTKDGEPIEQEDNEEKYSFN 66
Query: 638 FENGNLLISPVSRDDSGIYSCTATNVHGMDESKGRLIVL 676
++ L+I V + D Y C A N G ++ L V
Sbjct: 67 YDGSELIIKKVDKSDEAEYICIAENKAGEQDATIHLKVF 105
Score = 35.0 bits (79), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 41/79 (51%), Gaps = 5/79 (6%)
Query: 506 LTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRY-FIQDNVLTIRYLNPERDPAMYQ 564
+T C+A G P+ T +W ++GE + E +++++Y F D I + D A Y
Sbjct: 31 VTLACDADGFPEPTMTWTKDGEPIEQE----DNEEKYSFNYDGSELIIKKVDKSDEAEYI 86
Query: 565 CRAKNQLKTRYSSAQLRVL 583
C A+N+ + ++ L+V
Sbjct: 87 CIAENKAGEQDATIHLKVF 105
Score = 33.5 bits (75), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 30/70 (42%), Gaps = 6/70 (8%)
Query: 212 ITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVEDRGS 271
+TL+C A G+P P+ W K+ ++ D F G LII + D
Sbjct: 31 VTLACDADGFPEPTMTWTKDGEPIEQE-----DNEEKYSFNYDGSELIIKKVDK-SDEAE 84
Query: 272 YHCKASNKFG 281
Y C A NK G
Sbjct: 85 YICIAENKAG 94
>pdb|3V6B|R Chain R, Vegfr-2VEGF-E Complex Structure
Length = 424
Score = 44.3 bits (103), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 43/171 (25%), Positives = 65/171 (38%), Gaps = 16/171 (9%)
Query: 352 ALYFSALEQIDAGNYSCNVQSKVSDTGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPEAP 411
L + + D G Y+C S + T +N F + P F + ++ EA
Sbjct: 161 TLTIDGVTRSDQGLYTCAASSGLM-TKKNSTFVRVHEKPFVAF------GSGMESLVEA- 212
Query: 412 KAGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYFENFNRILTIPNVKVEDQGEYICRAS 471
G++VR+ GYP P W + G PL N + +LTI V D G Y +
Sbjct: 213 TVGERVRIPAKYLGYPPPEIKWYKNGIPLESNHTIKA-GHVLTIMEVSERDTGNYTVILT 271
Query: 472 NDRSALESSVTISI------QAEPNFTIPLTDKHMDNQADLTWTCEAFGVP 516
N S + S +S+ Q I D + T TC + +P
Sbjct: 272 NPISKEKQSHVVSLVVYVPPQIGEKSLISPVDSYQYGTTQ-TLTCTVYAIP 321
Score = 39.3 bits (90), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 54/233 (23%), Positives = 87/233 (37%), Gaps = 38/233 (16%)
Query: 413 AGDKVRLECVA---------FGYPVPSYN-----WTRRGSPLPRNAYFENFNRILTIPNV 458
G+K+ L C A F + PS R + + F LTI V
Sbjct: 108 VGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLSTLTIDGV 167
Query: 459 KVEDQGEYICRASNDRSALESSVTISIQAEPNFTI-----PLTDKHMDNQADLTWTCEAF 513
DQG Y C AS+ ++S + + +P L + + + + +
Sbjct: 168 TRSDQGLYTCAASSGLMTKKNSTFVRVHEKPFVAFGSGMESLVEATVGERVRI--PAKYL 225
Query: 514 GVPDVTYSWFRNGELLNSETLPLEDQDRYFIQDNVLTIRYLNPERDPAMYQCRAKNQL-K 572
G P W++NG +PLE + +VLTI ++ ERD Y N + K
Sbjct: 226 GYPPPEIKWYKNG-------IPLES-NHTIKAGHVLTIMEVS-ERDTGNYTVILTNPISK 276
Query: 573 TRYSSAQLRVLTLKPSFKKR----PLESETYAGEGGNVTIFCNPEAAPKPKFV 621
+ S V+ + P ++ P++S Y G T+ C A P P +
Sbjct: 277 EKQSHVVSLVVYVPPQIGEKSLISPVDSYQY---GTTQTLTCTVYAIPPPHHI 326
>pdb|1NBQ|A Chain A, Crystal Structure Of Human Junctional Adhesion Molecule
Type 1
pdb|1NBQ|B Chain B, Crystal Structure Of Human Junctional Adhesion Molecule
Type 1
Length = 209
Score = 43.9 bits (102), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 44/176 (25%), Positives = 64/176 (36%), Gaps = 18/176 (10%)
Query: 210 NDITLSCYAGGYPNPSYEWFKEDYVQDRLVA--NLIDPLSDKRFTLSGGNLIINDPRQVE 267
N + LSC G+ +P EW + RLV N I + R T + + E
Sbjct: 20 NPVKLSCAYSGFSSPRVEWKFDQGDTTRLVCYNNKITASYEDRVTFLPTGITFKSVTR-E 78
Query: 268 DRGSYHCKAS----NKFGSIISESVQLAFGFIGEFNLKRAPEIGNQNWGKAMFCDPPTNY 323
D G+Y C S N +G + + + L N+ + IGN+ + C
Sbjct: 79 DTGTYTCMVSEEGGNSYGEVKVKLIVLVPPSKPTVNIPSSATIGNR---AVLTCSEQDGS 135
Query: 324 PGVNYYWARD--YFPNFVEEDKR------VFVSYDGALYFSALEQIDAGNYSCNVQ 371
P Y W +D P + + V G L F L D G YSC +
Sbjct: 136 PPSEYTWFKDGIVMPTNPKSTRAFSNSSYVLNPTTGELVFDPLSASDTGEYSCEAR 191
Score = 43.5 bits (101), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 33/138 (23%), Positives = 60/138 (43%), Gaps = 13/138 (9%)
Query: 539 QDRYFIQDNVLTIRYLNPERDPAMYQCRAKNQLKTRYSSAQLRVLTLKPSFKKRPLESET 598
+DR +T + + E D Y C + Y +++++ L P K + +
Sbjct: 60 EDRVTFLPTGITFKSVTRE-DTGTYTCMVSEEGGNSYGEVKVKLIVLVPPSKPT-VNIPS 117
Query: 599 YAGEGGNVTIFCNPE-AAPKPKFVWKKDGNIIGSGGRR-KIFEN---------GNLLISP 647
A G + C+ + +P ++ W KDG ++ + + + F N G L+ P
Sbjct: 118 SATIGNRAVLTCSEQDGSPPSEYTWFKDGIVMPTNPKSTRAFSNSSYVLNPTTGELVFDP 177
Query: 648 VSRDDSGIYSCTATNVHG 665
+S D+G YSC A N +G
Sbjct: 178 LSASDTGEYSCEARNGYG 195
Score = 36.6 bits (83), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 43/96 (44%), Gaps = 16/96 (16%)
Query: 204 SKRSILNDITLSCY-AGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLSG------- 255
S +I N L+C G P Y WFK+ V +P S + F+ S
Sbjct: 117 SSATIGNRAVLTCSEQDGSPPSEYTWFKDGIVMP------TNPKSTRAFSNSSYVLNPTT 170
Query: 256 GNLIINDPRQVEDRGSYHCKASNKFGS-IISESVQL 290
G L+ DP D G Y C+A N +G+ + S +V++
Sbjct: 171 GELVF-DPLSASDTGEYSCEARNGYGTPMTSNAVRM 205
Score = 36.2 bits (82), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 47/187 (25%), Positives = 67/187 (35%), Gaps = 19/187 (10%)
Query: 595 ESETYAGEGGNVTIFCNPEAAPKPKFVWKKD-----------GNIIGSGGRRKIFENGNL 643
E E E V + C P+ WK D I S R F +
Sbjct: 11 EPEVRIPENNPVKLSCAYSGFSSPRVEWKFDQGDTTRLVCYNNKITASYEDRVTFLPTGI 70
Query: 644 LISPVSRDDSGIYSCTATNVHG--MDESKGRLIVLHGPSYYEQLPPKITIAAHRNLQLRC 701
V+R+D+G Y+C + G E K +LIVL PS P +R + L C
Sbjct: 71 TFKSVTREDTGTYTCMVSEEGGNSYGEVKVKLIVLVPPSKPTVNIPSSATIGNRAV-LTC 129
Query: 702 SAHTEELLDVAYIWTHNGVRIGNMDLNELETPN----INIDGGLLEITNASFADAGEYEC 757
S + Y W +G+ + + N +N G L S +D GEY C
Sbjct: 130 SEQ-DGSPPSEYTWFKDGIVMPTNPKSTRAFSNSSYVLNPTTGELVFDPLSASDTGEYSC 188
Query: 758 VVKSTVG 764
++ G
Sbjct: 189 EARNGYG 195
Score = 34.3 bits (77), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 39/159 (24%), Positives = 62/159 (38%), Gaps = 23/159 (14%)
Query: 341 EDKRVFVSYDGALYFSALEQIDAGNYSCNVQSKVSDTGRNGPFFPLKVFPHSNFQQLKFP 400
ED+ F+ + F ++ + D G Y+C VS+ G N + +KV L P
Sbjct: 60 EDRVTFLPT--GITFKSVTREDTGTYTC----MVSEEGGNS-YGEVKV----KLIVLVPP 108
Query: 401 NNFPKTFPEAPKAGDKVRLECVAF-GYPVPSYNWTRRGSPLPRNA----YFENFNRILTI 455
+ P + G++ L C G P Y W + G +P N F N + +L
Sbjct: 109 SKPTVNIPSSATIGNRAVLTCSEQDGSPPSEYTWFKDGIVMPTNPKSTRAFSNSSYVLNP 168
Query: 456 PN-------VKVEDQGEYICRASNDRSALESSVTISIQA 487
+ D GEY C A N +S + ++A
Sbjct: 169 TTGELVFDPLSASDTGEYSCEARNGYGTPMTSNAVRMEA 207
>pdb|1RHF|A Chain A, Crystal Structure Of Human Tyro3-D1d2
pdb|1RHF|B Chain B, Crystal Structure Of Human Tyro3-D1d2
Length = 182
Score = 43.5 bits (101), Expect = 6e-04, Method: Composition-based stats.
Identities = 31/125 (24%), Positives = 54/125 (43%), Gaps = 20/125 (16%)
Query: 414 GDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYFENFNRI------------LTIPNVKVE 461
G V+L C G P W + G A +N +++ L++ +V+
Sbjct: 17 GQPVKLNCSVEGXEEPDIQWVKDG------AVVQNLDQLYIPVSEQHWIGFLSLKSVERS 70
Query: 462 DQGEYICRASND-RSALESSVTISIQAEPNFTIPLTDKHMDNQADLTWTCEAFGVPD-VT 519
D G Y C+ + + + V ++++ P FT+ D + A +CEA G P+ VT
Sbjct: 71 DAGRYWCQVEDGGETEISQPVWLTVEGVPFFTVEPKDLAVPPNAPFQLSCEAVGPPEPVT 130
Query: 520 YSWFR 524
W+R
Sbjct: 131 IVWWR 135
Score = 36.2 bits (82), Expect = 0.098, Method: Composition-based stats.
Identities = 29/127 (22%), Positives = 52/127 (40%), Gaps = 6/127 (4%)
Query: 602 EGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFEN-----GNLLISPVSRDDSGIY 656
+G V + C+ E +P W KDG ++ + + I + G L + V R D+G Y
Sbjct: 16 QGQPVKLNCSVEGXEEPDIQWVKDGAVVQNLDQLYIPVSEQHWIGFLSLKSVERSDAGRY 75
Query: 657 SCTATNVHGMDESKGRLIVLHGPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWT 716
C + + S+ + + G ++ P + + + QL C A V +W
Sbjct: 76 WCQVEDGGETEISQPVWLTVEGVPFFTVEPKDLAVPPNAPFQLSCEA-VGPPEPVTIVWW 134
Query: 717 HNGVRIG 723
+IG
Sbjct: 135 RGTTKIG 141
Score = 31.6 bits (70), Expect = 2.3, Method: Composition-based stats.
Identities = 22/76 (28%), Positives = 37/76 (48%), Gaps = 5/76 (6%)
Query: 686 PPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDG-GLLEI 744
P K+T++ + ++L CS E D+ W +G + N+D +L P G L +
Sbjct: 9 PVKLTVSQGQPVKLNCSVEGXEEPDIQ--WVKDGAVVQNLD--QLYIPVSEQHWIGFLSL 64
Query: 745 TNASFADAGEYECVVK 760
+ +DAG Y C V+
Sbjct: 65 KSVERSDAGRYWCQVE 80
>pdb|2ID5|A Chain A, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|B Chain B, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|C Chain C, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|D Chain D, Crystal Structure Of The Lingo-1 Ectodomain
Length = 477
Score = 43.5 bits (101), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 33/82 (40%), Gaps = 3/82 (3%)
Query: 597 ETYAGEGGNVTIFCNPEAAPKPKFVW---KKDGNIIGSGGRRKIFENGNLLISPVSRDDS 653
+ + EG V C + P P +W +K S GR +F +G L + D+
Sbjct: 394 QVFVDEGHTVQFVCRADGDPPPAILWLSPRKHLVSAKSNGRLTVFPDGTLEVRYAQVQDN 453
Query: 654 GIYSCTATNVHGMDESKGRLIV 675
G Y C A N G D L V
Sbjct: 454 GTYLCIAANAGGNDSMPAHLHV 475
>pdb|2KKQ|A Chain A, Solution Nmr Structure Of The Ig-Like C2-Type 2 Domain Of
Human Myotilin. Northeast Structural Genomics Target
Hr3158
Length = 116
Score = 43.1 bits (100), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 44/99 (44%), Gaps = 7/99 (7%)
Query: 587 PSFKKRPLESETYAGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGN---- 642
P F +P + EG +V + C A P PK WK++ ++ R N
Sbjct: 16 PMFIYKPQSKKVL--EGDSVKLECQISAIPPPKLFWKRNNEMVQFNTDRISLYQDNTGRV 73
Query: 643 -LLISPVSRDDSGIYSCTATNVHGMDESKGRLIVLHGPS 680
LLI V++ D+G Y+ +A N G+ RL V P+
Sbjct: 74 TLLIKDVNKKDAGWYTVSAVNEAGVTTCNTRLDVTARPN 112
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 42/95 (44%), Gaps = 8/95 (8%)
Query: 408 PEAPKA--GDKVRLECVAFGYPVPSYNWTRRGSPLPRNA-----YFENFNRI-LTIPNVK 459
P++ K GD V+LEC P P W R + N Y +N R+ L I +V
Sbjct: 22 PQSKKVLEGDSVKLECQISAIPPPKLFWKRNNEMVQFNTDRISLYQDNTGRVTLLIKDVN 81
Query: 460 VEDQGEYICRASNDRSALESSVTISIQAEPNFTIP 494
+D G Y A N+ + + + A PN T+P
Sbjct: 82 KKDAGWYTVSAVNEAGVTTCNTRLDVTARPNQTLP 116
>pdb|1FHG|A Chain A, High Resolution Refinement Of Telokin
Length = 154
Score = 43.1 bits (100), Expect = 7e-04, Method: Composition-based stats.
Identities = 33/95 (34%), Positives = 41/95 (43%), Gaps = 6/95 (6%)
Query: 585 LKPSFKKRPLESETYAGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIF--ENGN 642
+KP F K L+ E EG C E P P+ +W KD N + +I E GN
Sbjct: 40 VKPYFTKTILDMEVV--EGSAARFDCKVEGYPDPEVMWFKDDNPVKESRHFQIDYDEEGN 97
Query: 643 --LLISPVSRDDSGIYSCTATNVHGMDESKGRLIV 675
L IS V DD Y+C A N G L+V
Sbjct: 98 CSLTISEVCGDDDAKYTCKAVNSLGEATCTAELLV 132
Score = 38.9 bits (89), Expect = 0.014, Method: Composition-based stats.
Identities = 25/80 (31%), Positives = 37/80 (46%), Gaps = 7/80 (8%)
Query: 414 GDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYF-----ENFNRILTIPNVKVEDQGEYIC 468
G R +C GYP P W + +P+ + +F E N LTI V +D +Y C
Sbjct: 56 GSAARFDCKVEGYPDPEVMWFKDDNPVKESRHFQIDYDEEGNCSLTISEVCGDDDAKYTC 115
Query: 469 RASNDRSALESSVTISIQAE 488
+A N S E++ T + E
Sbjct: 116 KAVN--SLGEATCTAELLVE 133
Score = 32.3 bits (72), Expect = 1.3, Method: Composition-based stats.
Identities = 29/122 (23%), Positives = 51/122 (41%), Gaps = 13/122 (10%)
Query: 469 RASNDRSALESSVTISIQAEPNFTIPLTDKHMDNQADLTWTCEAFGVPDVTYSWFRNGEL 528
+ N+ + LE +P FT + D + + + C+ G PD WF++
Sbjct: 22 KVENEDAFLEEVAEEKPHVKPYFTKTILDMEVVEGSAARFDCKVEGYPDPEVMWFKDDN- 80
Query: 529 LNSETLPLEDQDRYFIQ-----DNVLTIRYLNPERDPAMYQCRAKNQLKTRYSSAQLRVL 583
P+++ + I + LTI + + D A Y C+A N L +A+L V
Sbjct: 81 ------PVKESRHFQIDYDEEGNCSLTISEVCGD-DDAKYTCKAVNSLGEATCTAELLVE 133
Query: 584 TL 585
T+
Sbjct: 134 TM 135
Score = 30.0 bits (66), Expect = 5.8, Method: Composition-based stats.
Identities = 27/99 (27%), Positives = 36/99 (36%), Gaps = 25/99 (25%)
Query: 190 PYFIKQPTD--VVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLS 247
PYF K D VV + R C GYP+P WFK+D +P+
Sbjct: 42 PYFTKTILDMEVVEGSAAR-------FDCKVEGYPDPEVMWFKDD-----------NPVK 83
Query: 248 DKR-----FTLSGGNLIINDPRQVEDRGSYHCKASNKFG 281
+ R + G + +D Y CKA N G
Sbjct: 84 ESRHFQIDYDEEGNCSLTISEVCGDDDAKYTCKAVNSLG 122
>pdb|1IJ9|A Chain A, Highly Hydrated Human Vcam-1 Fragment
Length = 196
Score = 43.1 bits (100), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 44/185 (23%), Positives = 73/185 (39%), Gaps = 9/185 (4%)
Query: 405 KTFPEA---PKAGDKVRLECVAFGYPVPSYNW-TRRGSPLPRNAYFENFNRILTIPNVKV 460
+T PE+ + GD V L C G P ++W T+ SPL E LT+ V
Sbjct: 4 ETTPESRYLAQIGDSVSLTCSTTGCESPFFSWRTQIDSPLNGKVTNEGTTSTLTMNPVSF 63
Query: 461 EDQGEYICRASNDRSALESSVTISIQAEPNFTIPLTDKHMDNQADLTWTCEAFGV---PD 517
++ Y+C A+ + LE + + I + P ++ +T C V
Sbjct: 64 GNEHSYLCTATCESRKLEKGIQVEIYSFPKDPEIHLSGPLEAGKPITVKCSVADVYPFDR 123
Query: 518 VTYSWFRNGELLNSETLPLEDQDRYFIQDNVLTIRYLNPERDPA-MYQCRAKNQLKTRYS 576
+ + L+ S+ LED DR ++ L + + D + CRAK + S
Sbjct: 124 LEIDLLKGDHLMKSQEF-LEDADRKSLETKSLEVTFTPVIEDIGKVLVCRAKLHIDEMDS 182
Query: 577 SAQLR 581
+R
Sbjct: 183 VPTVR 187
>pdb|1VSC|A Chain A, Vcam-1
pdb|1VSC|B Chain B, Vcam-1
Length = 196
Score = 43.1 bits (100), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 44/185 (23%), Positives = 73/185 (39%), Gaps = 9/185 (4%)
Query: 405 KTFPEA---PKAGDKVRLECVAFGYPVPSYNW-TRRGSPLPRNAYFENFNRILTIPNVKV 460
+T PE+ + GD V L C G P ++W T+ SPL E LT+ V
Sbjct: 4 ETTPESRYLAQIGDSVSLTCSTTGCESPFFSWRTQIDSPLNGKVTNEGTTSTLTMNPVSF 63
Query: 461 EDQGEYICRASNDRSALESSVTISIQAEPNFTIPLTDKHMDNQADLTWTCEAFGV---PD 517
++ Y+C A+ + LE + + I + P ++ +T C V
Sbjct: 64 GNEHSYLCTATCESRKLEKGIQVEIYSFPKDPEIHLSGPLEAGKPITVKCSVADVYPFDR 123
Query: 518 VTYSWFRNGELLNSETLPLEDQDRYFIQDNVLTIRYLNPERDPA-MYQCRAKNQLKTRYS 576
+ + L+ S+ LED DR ++ L + + D + CRAK + S
Sbjct: 124 LEIDLLKGDHLMKSQEF-LEDADRKSLETKSLEVTFTPVIEDIGKVLVCRAKLHIDEMDS 182
Query: 577 SAQLR 581
+R
Sbjct: 183 VPTVR 187
>pdb|1VCA|A Chain A, Crystal Structure Of An Integrin-Binding Fragment Of
Vascular Cell Adhesion Molecule-1 At 1.8 Angstroms
Resolution
pdb|1VCA|B Chain B, Crystal Structure Of An Integrin-Binding Fragment Of
Vascular Cell Adhesion Molecule-1 At 1.8 Angstroms
Resolution
Length = 202
Score = 43.1 bits (100), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 44/185 (23%), Positives = 73/185 (39%), Gaps = 9/185 (4%)
Query: 405 KTFPEA---PKAGDKVRLECVAFGYPVPSYNW-TRRGSPLPRNAYFENFNRILTIPNVKV 460
+T PE+ + GD V L C G P ++W T+ SPL E LT+ V
Sbjct: 4 ETTPESRYLAQIGDSVSLTCSTTGCESPFFSWRTQIDSPLNGKVTNEGTTSTLTMNPVSF 63
Query: 461 EDQGEYICRASNDRSALESSVTISIQAEPNFTIPLTDKHMDNQADLTWTCEAFGV---PD 517
++ Y+C A+ + LE + + I + P ++ +T C V
Sbjct: 64 GNEHSYLCTATCESRKLEKGIQVEIYSFPKDPEIHLSGPLEAGKPITVKCSVADVYPFDR 123
Query: 518 VTYSWFRNGELLNSETLPLEDQDRYFIQDNVLTIRYLNPERDPA-MYQCRAKNQLKTRYS 576
+ + L+ S+ LED DR ++ L + + D + CRAK + S
Sbjct: 124 LEIDLLKGDHLMKSQEF-LEDADRKSLETKSLEVTFTPVIEDIGKVLVCRAKLHIDEMDS 182
Query: 577 SAQLR 581
+R
Sbjct: 183 VPTVR 187
>pdb|1NUN|B Chain B, Crystal Structure Analysis Of The Fgf10-fgfr2b Complex
Length = 230
Score = 42.7 bits (99), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 46/186 (24%), Positives = 73/186 (39%), Gaps = 15/186 (8%)
Query: 595 ESETYAGEGGNVTIF-CNPEAAPKPKFVWKKDGNIIGS----GGRRKIFENGNLLISPVS 649
E +A N F C P P W K+G GG + ++ +L+ V
Sbjct: 24 EKRLHAVPAANTVKFRCPAGGNPXPTXRWLKNGKEFKQEHRIGGYKVRNQHWSLIXESVV 83
Query: 650 RDDSGIYSCTATNVHGMDESKGRLIVL----HGPSYYEQLPPKITIAAHRNLQLRCSAHT 705
D G Y+C N +G L V+ H P LP + +++ C ++
Sbjct: 84 PSDKGNYTCVVENEYGSINHTYHLDVVERSPHRPILQAGLPANASTVVGGDVEFVCKVYS 143
Query: 706 EELLDVAYI--WTHNGVRIGNMDL---NELETPNINIDGG-LLEITNASFADAGEYECVV 759
+ + +I NG + G L L+ IN +L + N + ADAGEY C V
Sbjct: 144 DAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKHSGINSSNAEVLALFNVTEADAGEYICKV 203
Query: 760 KSTVGK 765
+ +G+
Sbjct: 204 SNYIGQ 209
Score = 37.0 bits (84), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 42/191 (21%), Positives = 71/191 (37%), Gaps = 27/191 (14%)
Query: 506 LTWTCEAFGVPDVTYSWFRNGELLNSE----TLPLEDQDRYFIQDNVLTIRYLNPERDPA 561
+ + C A G P T W +NG+ E + +Q I ++V+ D
Sbjct: 36 VKFRCPAGGNPXPTXRWLKNGKEFKQEHRIGGYKVRNQHWSLIXESVVP-------SDKG 88
Query: 562 MYQCRAKNQLKTRYSSAQLRVLTLKPS--FKKRPLESETYAGEGGNVTIFCNPEAAPKPK 619
Y C +N+ + + L V+ P + L + GG+V C + +P
Sbjct: 89 NYTCVVENEYGSINHTYHLDVVERSPHRPILQAGLPANASTVVGGDVEFVCKVYSDAQPH 148
Query: 620 FVW----KKDGNIIGSGGR--RKIFENGN--------LLISPVSRDDSGIYSCTATNVHG 665
W +K+G+ G G K+ ++ L + V+ D+G Y C +N G
Sbjct: 149 IQWIKHVEKNGSKYGPDGLPYLKVLKHSGINSSNAEVLALFNVTEADAGEYICKVSNYIG 208
Query: 666 MDESKGRLIVL 676
L VL
Sbjct: 209 QANQSAWLTVL 219
Score = 36.2 bits (82), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 30/126 (23%), Positives = 42/126 (33%), Gaps = 21/126 (16%)
Query: 362 DAGNYSCNVQSKVSDTGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPEAPKAGDKVRLEC 421
D GNY+C V+++ ++ PH Q P N G V C
Sbjct: 86 DKGNYTCVVENEYGSINHTYHLDVVERSPHRPILQAGLPANASTVV------GGDVEFVC 139
Query: 422 VAFGYPVPSYNWTRR-----------GSPLPRNAYFENFN----RILTIPNVKVEDQGEY 466
+ P W + G P + N +L + NV D GEY
Sbjct: 140 KVYSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKHSGINSSNAEVLALFNVTEADAGEY 199
Query: 467 ICRASN 472
IC+ SN
Sbjct: 200 ICKVSN 205
Score = 35.8 bits (81), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 39/189 (20%), Positives = 67/189 (35%), Gaps = 19/189 (10%)
Query: 413 AGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYF-----ENFNRILTIPNVKVEDQGEYI 467
A + V+ C A G P P+ W + G + N + L +V D+G Y
Sbjct: 32 AANTVKFRCPAGGNPXPTXRWLKNGKEFKQEHRIGGYKVRNQHWSLIXESVVPSDKGNYT 91
Query: 468 CRASNDRSALESSVTISIQAEPNFTIPLTDKHMDNQA------DLTWTCEAFGVPDVTYS 521
C N+ ++ + + + E + P+ + A D+ + C+ +
Sbjct: 92 CVVENEYGSINHTYHLDV-VERSPHRPILQAGLPANASTVVGGDVEFVCKVYSDAQPHIQ 150
Query: 522 WF----RNGELLNSETLPLEDQDRY--FIQDNVLTIRYLN-PERDPAMYQCRAKNQLKTR 574
W +NG + LP ++ N + N E D Y C+ N +
Sbjct: 151 WIKHVEKNGSKYGPDGLPYLKVLKHSGINSSNAEVLALFNVTEADAGEYICKVSNYIGQA 210
Query: 575 YSSAQLRVL 583
SA L VL
Sbjct: 211 NQSAWLTVL 219
Score = 34.7 bits (78), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 37/76 (48%), Gaps = 10/76 (13%)
Query: 210 NDITLSCYAGGYPNPSYEWFK--EDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVE 267
N + C AGG P P+ W K +++ Q+ + + ++ ++L I +
Sbjct: 34 NTVKFRCPAGGNPXPTXRWLKNGKEFKQEHRIGGY--KVRNQHWSL------IXESVVPS 85
Query: 268 DRGSYHCKASNKFGSI 283
D+G+Y C N++GSI
Sbjct: 86 DKGNYTCVVENEYGSI 101
>pdb|1NCT|A Chain A, Titin Module M5, N-Terminally Extended, Nmr
pdb|1NCU|A Chain A, Titin Module M5, N-Terminally Extended, Nmr
Length = 106
Score = 42.7 bits (99), Expect = 9e-04, Method: Composition-based stats.
Identities = 22/77 (28%), Positives = 34/77 (44%), Gaps = 4/77 (5%)
Query: 414 GDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYFE----NFNRILTIPNVKVEDQGEYICR 469
G+ R C G PVP+ W R+G L +A + + I +V+ D+G Y
Sbjct: 29 GESARFSCDTDGEPVPTVTWLRKGQVLSTSARHQVTTTKYKSTFEISSVQASDEGNYSVV 88
Query: 470 ASNDRSALESSVTISIQ 486
N E+ T++IQ
Sbjct: 89 VENSEGKQEAEFTLTIQ 105
Score = 38.5 bits (88), Expect = 0.019, Method: Composition-based stats.
Identities = 23/95 (24%), Positives = 36/95 (37%), Gaps = 5/95 (5%)
Query: 584 TLKPSFKKRPLESETYAGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFEN--- 640
TL +P Y GE + C+ + P P W + G ++ + R ++
Sbjct: 12 TLAARILTKPRSMTVYEGESARFS--CDTDGEPVPTVTWLRKGQVLSTSARHQVTTTKYK 69
Query: 641 GNLLISPVSRDDSGIYSCTATNVHGMDESKGRLIV 675
IS V D G YS N G E++ L +
Sbjct: 70 STFEISSVQASDEGNYSVVVENSEGKQEAEFTLTI 104
>pdb|1U2H|A Chain A, X-Ray Structure Of The N-Terminally Truncated Human Apep-1
Length = 99
Score = 42.7 bits (99), Expect = 0.001, Method: Composition-based stats.
Identities = 28/101 (27%), Positives = 43/101 (42%), Gaps = 11/101 (10%)
Query: 486 QAEPNFTIPLTDKHMDNQADLTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQ 545
+A P F + L D+ + D+ + G P SW RN + P+ R F +
Sbjct: 3 KAPPTFKVSLMDQSVREGQDVIMSIRVQGEPKPVVSWLRNRQ-------PVRPDQRRFAE 55
Query: 546 D---NVLTIRYLNPER-DPAMYQCRAKNQLKTRYSSAQLRV 582
+ + +R L ER D Y C+A N+ R A+L V
Sbjct: 56 EAEGGLCRLRILAAERGDAGFYTCKAVNEYGARQCEARLEV 96
Score = 37.0 bits (84), Expect = 0.057, Method: Composition-based stats.
Identities = 27/93 (29%), Positives = 42/93 (45%), Gaps = 6/93 (6%)
Query: 587 PSFKKRPLESETYAGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRR--KIFENG--N 642
P+FK ++ EG +V + + PKP W ++ + RR + E G
Sbjct: 6 PTFKVSLMDQSVR--EGQDVIMSIRVQGEPKPVVSWLRNRQPVRPDQRRFAEEAEGGLCR 63
Query: 643 LLISPVSRDDSGIYSCTATNVHGMDESKGRLIV 675
L I R D+G Y+C A N +G + + RL V
Sbjct: 64 LRILAAERGDAGFYTCKAVNEYGARQCEARLEV 96
>pdb|1TNM|A Chain A, Tertiary Structure Of An Immunoglobulin-Like Domain From
The Muscle Protein Titin: A New Member Of The I Set
pdb|1TNN|A Chain A, Tertiary Structure Of An Immunoglobulin-Like Domain From
The Muscle Protein Titin: A New Member Of The I Set
Length = 100
Score = 42.4 bits (98), Expect = 0.001, Method: Composition-based stats.
Identities = 22/77 (28%), Positives = 34/77 (44%), Gaps = 4/77 (5%)
Query: 414 GDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYFE----NFNRILTIPNVKVEDQGEYICR 469
G+ R C G PVP+ W R+G L +A + + I +V+ D+G Y
Sbjct: 23 GESARFSCDTDGEPVPTVTWLRKGQVLSTSARHQVTTTKYKSTFEISSVQASDEGNYSVV 82
Query: 470 ASNDRSALESSVTISIQ 486
N E+ T++IQ
Sbjct: 83 VENSEGKQEAEFTLTIQ 99
Score = 37.0 bits (84), Expect = 0.051, Method: Composition-based stats.
Identities = 21/87 (24%), Positives = 34/87 (39%), Gaps = 5/87 (5%)
Query: 592 RPLESETYAGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFEN---GNLLISPV 648
+P Y GE + C+ + P P W + G ++ + R ++ IS V
Sbjct: 14 KPRSMTVYEGESARFS--CDTDGEPVPTVTWLRKGQVLSTSARHQVTTTKYKSTFEISSV 71
Query: 649 SRDDSGIYSCTATNVHGMDESKGRLIV 675
D G YS N G E++ L +
Sbjct: 72 QASDEGNYSVVVENSEGKQEAEFTLTI 98
>pdb|1TLK|A Chain A, X-Ray Structure Determination Of Telokin, The C-Terminal
Domain Of Myosin Light Chain Kinase, At 2.8 Angstroms
Resolution
Length = 154
Score = 42.0 bits (97), Expect = 0.002, Method: Composition-based stats.
Identities = 32/95 (33%), Positives = 41/95 (43%), Gaps = 6/95 (6%)
Query: 585 LKPSFKKRPLESETYAGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIF--ENGN 642
+KP F K L+ + EG C E P P+ +W KD N + +I E GN
Sbjct: 40 VKPYFTKTILDMDVV--EGSAARFDCKVEGYPDPEVMWFKDDNPVKESRHFQIDYDEEGN 97
Query: 643 --LLISPVSRDDSGIYSCTATNVHGMDESKGRLIV 675
L IS V DD Y+C A N G L+V
Sbjct: 98 CSLTISEVCGDDDAKYTCKAVNSLGEATCTAELLV 132
Score = 38.9 bits (89), Expect = 0.014, Method: Composition-based stats.
Identities = 25/80 (31%), Positives = 37/80 (46%), Gaps = 7/80 (8%)
Query: 414 GDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYF-----ENFNRILTIPNVKVEDQGEYIC 468
G R +C GYP P W + +P+ + +F E N LTI V +D +Y C
Sbjct: 56 GSAARFDCKVEGYPDPEVMWFKDDNPVKESRHFQIDYDEEGNCSLTISEVCGDDDAKYTC 115
Query: 469 RASNDRSALESSVTISIQAE 488
+A N S E++ T + E
Sbjct: 116 KAVN--SLGEATCTAELLVE 133
Score = 32.0 bits (71), Expect = 1.7, Method: Composition-based stats.
Identities = 29/122 (23%), Positives = 51/122 (41%), Gaps = 13/122 (10%)
Query: 469 RASNDRSALESSVTISIQAEPNFTIPLTDKHMDNQADLTWTCEAFGVPDVTYSWFRNGEL 528
+ N+ + LE +P FT + D + + + C+ G PD WF++
Sbjct: 22 KVENEDAFLEEVAEEKPHVKPYFTKTILDMDVVEGSAARFDCKVEGYPDPEVMWFKDDN- 80
Query: 529 LNSETLPLEDQDRYFIQ-----DNVLTIRYLNPERDPAMYQCRAKNQLKTRYSSAQLRVL 583
P+++ + I + LTI + + D A Y C+A N L +A+L V
Sbjct: 81 ------PVKESRHFQIDYDEEGNCSLTISEVCGD-DDAKYTCKAVNSLGEATCTAELLVE 133
Query: 584 TL 585
T+
Sbjct: 134 TM 135
Score = 31.2 bits (69), Expect = 3.2, Method: Composition-based stats.
Identities = 26/97 (26%), Positives = 37/97 (38%), Gaps = 21/97 (21%)
Query: 190 PYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDK 249
PYF K D+ D+ + S C GYP+P WFK+D +P+ +
Sbjct: 42 PYFTKTILDM--DVVEGSAAR---FDCKVEGYPDPEVMWFKDD-----------NPVKES 85
Query: 250 R-----FTLSGGNLIINDPRQVEDRGSYHCKASNKFG 281
R + G + +D Y CKA N G
Sbjct: 86 RHFQIDYDEEGNCSLTISEVCGDDDAKYTCKAVNSLG 122
>pdb|1EPF|A Chain A, Crystal Structure Of The Two N-Terminal Immunoglobulin
Domains Of The Neural Cell Adhesion Molecule (Ncam)
pdb|1EPF|B Chain B, Crystal Structure Of The Two N-Terminal Immunoglobulin
Domains Of The Neural Cell Adhesion Molecule (Ncam)
pdb|1EPF|C Chain C, Crystal Structure Of The Two N-Terminal Immunoglobulin
Domains Of The Neural Cell Adhesion Molecule (Ncam)
pdb|1EPF|D Chain D, Crystal Structure Of The Two N-Terminal Immunoglobulin
Domains Of The Neural Cell Adhesion Molecule (Ncam)
Length = 191
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 43/159 (27%), Positives = 65/159 (40%), Gaps = 16/159 (10%)
Query: 508 WTCEAFG-VPDVTYSWFR-NGELL--NSETLPL--EDQDRYFIQDNVLTIRYLNPERDPA 561
+ C+ G D SWF NGE L N + + + D D + LTI N + D
Sbjct: 22 FLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDDS-----STLTIYNANID-DAG 75
Query: 562 MYQCRAKNQLKTRYSSAQLRVLTLKPSFKKRPLESETYAGEGGNVTIFCNPEAAPKPKFV 621
+Y+C + T+ + + K FK P E GE + I C+ ++ P +
Sbjct: 76 IYKCVVTAEDGTQSEATVNVKIFQKLMFKNAPTPQEFKEGE--DAVIVCDVVSSLPPTII 133
Query: 622 WKKDGN--IIGSGGRRKIFENGNLLISPVSRDDSGIYSC 658
WK G I+ R + N L I + + D G Y C
Sbjct: 134 WKHKGRDVILKKDVRFIVLSNNYLQIRGIKKTDEGTYRC 172
Score = 32.0 bits (71), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 28/112 (25%), Positives = 43/112 (38%), Gaps = 13/112 (11%)
Query: 362 DAGNYSCNVQSKVSDTGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPEAPKAGDKVRLEC 421
DAG Y C V ++ D ++ +K+F F+ P F K G+ + C
Sbjct: 73 DAGIYKCVVTAE--DGTQSEATVNVKIFQKLMFKNAPTPQEF--------KEGEDAVIVC 122
Query: 422 VAFGYPVPSYNWTRRGSP--LPRNAYFENF-NRILTIPNVKVEDQGEYICRA 470
P+ W +G L ++ F N L I +K D+G Y C
Sbjct: 123 DVVSSLPPTIIWKHKGRDVILKKDVRFIVLSNNYLQIRGIKKTDEGTYRCEG 174
Score = 30.0 bits (66), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 27/117 (23%), Positives = 46/117 (39%), Gaps = 6/117 (5%)
Query: 453 LTIPNVKVEDQGEYICRAS-NDRSALESSVTISIQAEPNFTIPLTDKHMDNQADLTWTCE 511
LTI N ++D G Y C + D + E++V + I + F T + D C+
Sbjct: 64 LTIYNANIDDAGIYKCVVTAEDGTQSEATVNVKIFQKLMFKNAPTPQEFKEGEDAVIVCD 123
Query: 512 AFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQDNVLTIRYLNPERDPAMYQCRAK 568
T W G + + +D + +N L IR + + D Y+C +
Sbjct: 124 VVSSLPPTIIWKHKGR----DVILKKDVRFIVLSNNYLQIRGIK-KTDEGTYRCEGR 175
>pdb|2DM2|A Chain A, Solution Structure Of The First Ig Domain Of Human
Palladin
Length = 110
Score = 40.8 bits (94), Expect = 0.004, Method: Composition-based stats.
Identities = 30/87 (34%), Positives = 37/87 (42%), Gaps = 8/87 (9%)
Query: 602 EGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGG-----RRKIFENGNLLISPVSRDDSGIY 656
EG VT C PKPK W KDG I +R + +L + + DD G Y
Sbjct: 22 EGMPVTFTCRVAGNPKPKIYWFKDGKQISPKSDHYTIQRDLDGTCSLHTTASTLDDDGNY 81
Query: 657 SCTATNVHGMDESKGRLIVL---HGPS 680
+ A N G GRL+V GPS
Sbjct: 82 TIMAANPQGRISCTGRLMVQAVNSGPS 108
Score = 29.6 bits (65), Expect = 8.1, Method: Composition-based stats.
Identities = 21/75 (28%), Positives = 30/75 (40%), Gaps = 11/75 (14%)
Query: 212 ITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDK---RFTLSGGNLIINDPRQVED 268
+T +C G P P WFK+ I P SD + L G + ++D
Sbjct: 26 VTFTCRVAGNPKPKIYWFKD--------GKQISPKSDHYTIQRDLDGTCSLHTTASTLDD 77
Query: 269 RGSYHCKASNKFGSI 283
G+Y A+N G I
Sbjct: 78 DGNYTIMAANPQGRI 92
>pdb|2Y25|A Chain A, Crystal Structure Of The Myomesin Domains My11-My13
pdb|2Y25|B Chain B, Crystal Structure Of The Myomesin Domains My11-My13
pdb|2Y25|C Chain C, Crystal Structure Of The Myomesin Domains My11-My13
pdb|2Y25|D Chain D, Crystal Structure Of The Myomesin Domains My11-My13
Length = 317
Score = 40.8 bits (94), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 36/129 (27%), Positives = 60/129 (46%), Gaps = 13/129 (10%)
Query: 605 NVTIFCNPEAAPK-PKFVWKKDGNIIGSGGRRKIFENG--NLLISPVSRDDSGIYSCTAT 661
NV + C K VW KD I S + F++G LLI+ S+ D+GIY
Sbjct: 23 NVLLKCKVANIKKETHIVWYKDEREI-SVDEKHDFKDGICTLLITEFSKKDAGIYEVILK 81
Query: 662 NVHGMDESKGRLIVLHGPSYYEQLPPKITIAAHRNLQLRCSAHTEELL--------DVAY 713
+ G D+S+ +L+ ++ KI ++A +L+++ +A +L D+
Sbjct: 82 DDRGKDKSRLKLVDEAFKELMMEVCKKIALSA-TDLKIQSTAEGIQLYSFVTYYVEDLKV 140
Query: 714 IWTHNGVRI 722
W+HNG I
Sbjct: 141 NWSHNGSAI 149
Score = 30.4 bits (67), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 31/72 (43%), Gaps = 4/72 (5%)
Query: 602 EGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKI-FENGN---LLISPVSRDDSGIYS 657
EG + + CN P P+ W K+ + S + FE G I+ VS DSG Y
Sbjct: 236 EGKALNLTCNVWGDPPPEVSWLKNEKALASDDHCNLKFEAGRTAYFTINGVSTADSGKYG 295
Query: 658 CTATNVHGMDES 669
N +G + S
Sbjct: 296 LVVKNKYGSETS 307
>pdb|3CII|G Chain G, Structure Of Nkg2aCD94 BOUND TO HLA-E
pdb|3CII|I Chain I, Structure Of Nkg2aCD94 BOUND TO HLA-E
Length = 121
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 41/85 (48%), Gaps = 7/85 (8%)
Query: 29 CPQHWVQYRDSCYRFVKSPLKTRNDAKLNCKSLDSDLANVNDADEHGFIMYQLFWQDPQR 88
C + WV YR +CY F+ S KT N+++ C S S L + + DE F+ Q+
Sbjct: 3 CQEKWVGYRCNCY-FISSEQKTWNESRHLCASQKSSLLQLQNTDELDFM------SSSQQ 55
Query: 89 RKWYFGGTQQSPNLWVNEDGTNLNE 113
W + W+ E+G+ L++
Sbjct: 56 FYWIGLSYSEEHTAWLWENGSALSQ 80
>pdb|2EO9|A Chain A, Solution Structure Of The Fifth Ig-Like Domain From Human
Roundabout Homo1
Length = 118
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 31/63 (49%), Gaps = 1/63 (1%)
Query: 604 GNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRR-KIFENGNLLISPVSRDDSGIYSCTATN 662
G + C +P P +W+KDG ++ + R K ENG L I D+G Y+C A+
Sbjct: 24 GTFVLSCVATGSPVPTILWRKDGVLVSTQDSRIKQLENGVLQIRYAKLGDTGRYTCIAST 83
Query: 663 VHG 665
G
Sbjct: 84 PSG 86
Score = 37.7 bits (86), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 37/91 (40%), Gaps = 11/91 (12%)
Query: 677 HGPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMD--LNELETPN 734
GP Q P T+A L C A + + +W +GV + D + +LE
Sbjct: 6 SGPPVIRQGPVNQTVAVDGTFVLSCVATGSPVPTI--LWRKDGVLVSTQDSRIKQLEN-- 61
Query: 735 INIDGGLLEITNASFADAGEYECVVKSTVGK 765
G+L+I A D G Y C+ + G+
Sbjct: 62 -----GVLQIRYAKLGDTGRYTCIASTPSGE 87
Score = 35.8 bits (81), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 37/79 (46%), Gaps = 5/79 (6%)
Query: 419 LECVAFGYPVPSYNWTRRGSPLP-RNAYFENF-NRILTIPNVKVEDQGEYICRASNDRSA 476
L CVA G PVP+ W + G + +++ + N +L I K+ D G Y C AS
Sbjct: 28 LSCVATGSPVPTILWRKDGVLVSTQDSRIKQLENGVLQIRYAKLGDTGRYTCIASTPSGE 87
Query: 477 LESSVTISIQAEPNFTIPL 495
S I +Q F +P+
Sbjct: 88 ATWSAYIEVQ---EFGVPV 103
>pdb|1GL4|B Chain B, Nidogen-1 G2PERLECAN IG3 COMPLEX
Length = 98
Score = 40.4 bits (93), Expect = 0.005, Method: Composition-based stats.
Identities = 28/81 (34%), Positives = 40/81 (49%), Gaps = 6/81 (7%)
Query: 409 EAPKAGDKVRLECVAFGYPVPSYN--WTR-RGSPLPRNAYFENFNRILTIPNVKVEDQGE 465
++ + G V C A P+Y WTR LP A +FN ILTI NV+ D G
Sbjct: 20 QSVRPGADVTFICTA-KSKSPAYTLVWTRLHNGKLPSRAM--DFNGILTIRNVQPSDAGT 76
Query: 466 YICRASNDRSALESSVTISIQ 486
Y+C SN + + + T+ +Q
Sbjct: 77 YVCTGSNMFAMDQGTATLHVQ 97
Score = 39.7 bits (91), Expect = 0.009, Method: Composition-based stats.
Identities = 25/74 (33%), Positives = 35/74 (47%), Gaps = 3/74 (4%)
Query: 603 GGNVTIFCNPEA-APKPKFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTAT 661
G +VT C ++ +P VW + N G R + NG L I V D+G Y CT +
Sbjct: 25 GADVTFICTAKSKSPAYTLVWTRLHN--GKLPSRAMDFNGILTIRNVQPSDAGTYVCTGS 82
Query: 662 NVHGMDESKGRLIV 675
N+ MD+ L V
Sbjct: 83 NMFAMDQGTATLHV 96
>pdb|2LQR|A Chain A, Nmr Structure Of Ig3 Domain Of Palladin
Length = 108
Score = 40.4 bits (93), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 34/79 (43%), Gaps = 5/79 (6%)
Query: 602 EGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGG-----RRKIFENGNLLISPVSRDDSGIY 656
EG VT C PKPK W KDG I +R + +L + + DD G Y
Sbjct: 21 EGMPVTFTCRVAGNPKPKIYWFKDGKQISPKSDHYTIQRDLDGTCSLHTTASTLDDDGNY 80
Query: 657 SCTATNVHGMDESKGRLIV 675
+ A N G GRL+V
Sbjct: 81 TIMAANPQGRVSCTGRLMV 99
>pdb|1HQ8|A Chain A, Crystal Structure Of The Murine Nk Cell-Activating
Receptor Nkg2d At 1.95 A
pdb|1JSK|A Chain A, Crystal Structure Of Murine Nk Cell Ligand Rae-1 Beta In
Complex With Nkg2d
pdb|1JSK|B Chain B, Crystal Structure Of Murine Nk Cell Ligand Rae-1 Beta In
Complex With Nkg2d
Length = 123
Score = 40.4 bits (93), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 28/102 (27%), Positives = 51/102 (50%), Gaps = 13/102 (12%)
Query: 29 CPQHWVQYRDSCYRFVKSPLKTRNDAKLNCKSLDSDLANVNDADEHGFIMYQLFWQDPQR 88
CP +W+ +R++CY+F KT N ++ +C S +S L + +E F+
Sbjct: 6 CPNNWICHRNNCYQFFNEE-KTWNQSQASCLSQNSSLLKIYSKEEQDFL--------KLV 56
Query: 89 RKWYFGGTQQSP--NLWVNEDGTNL--NELDAAFLPEPADNV 126
+ +++ G Q P W EDG++L N+L +P+ + V
Sbjct: 57 KSYHWMGLVQIPANGSWQWEDGSSLSYNQLTLVEIPKGSCAV 98
>pdb|1MCO|H Chain H, Three-Dimensional Structure Of A Human Immunoglobulin With
A Hinge Deletion
Length = 428
Score = 40.4 bits (93), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 55/212 (25%), Positives = 84/212 (39%), Gaps = 36/212 (16%)
Query: 365 NYSCNVQSKVSDTGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPEAPKAGDKV----RLE 420
Y CNV K S+T + P + L P+ F FP PK + +
Sbjct: 197 TYICNVNHKPSNTKVDKRVAP---------ELLGGPSVF--LFPPKPKDTLMISRTPEVT 245
Query: 421 CVAFGY----PVPSYNWTRRGSPL------PRNAYFENFNRILTIPNVKVE---DQGEYI 467
CV P +NW G + PR + + R++++ V + D EY
Sbjct: 246 CVVVDVSHEDPQVKFNWYVDGVQVHNAKTKPREQQYNSTYRVVSVLTVLHQNWLDGKEYK 305
Query: 468 CRASNDRSALESSVTIS-IQAEPN----FTIPLTDKHM-DNQADLTWTCEAFGVPDVTYS 521
C+ SN TIS + +P +T+P + + M NQ LT + F D+
Sbjct: 306 CKVSNKALPAPIEKTISKAKGQPREPQVYTLPPSREEMTKNQVSLTCLVKGFYPSDIAVE 365
Query: 522 WFRNGELLNS--ETLPLEDQDRYFIQDNVLTI 551
W NG+ N+ T P+ D D F + LT+
Sbjct: 366 WESNGQPENNYKTTPPVLDSDGSFFLYSKLTV 397
>pdb|3O4O|C Chain C, Crystal Structure Of An Interleukin-1 Receptor Complex
Length = 339
Score = 40.4 bits (93), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 56/227 (24%), Positives = 86/227 (37%), Gaps = 28/227 (12%)
Query: 516 PDVTYSWFRNGELLNSETLPLEDQDRYFIQDNVLTIRYLNP--ERDPAMYQCRAKNQLKT 573
P + +W +N ++ T+P E++ R + QD L +L P + D Y C +N
Sbjct: 53 PRINLTWHKND---SARTVPGEEETRMWAQDGAL---WLLPALQEDSGTYVCTTRNASYC 106
Query: 574 RYSSAQLRVLTLKPSFKKRPLESETYAGEGGNVTIFCNPEAA------PKPKFVWKKDGN 627
S +LRV +F P S + P+ + K W KD
Sbjct: 107 DKMSIELRVFENTDAF--LPFISYPQILTLSTSGVLVCPDLSEFTRDKTDVKIQWYKDSL 164
Query: 628 IIGSGGRRKIFENG--NLLISPVSRDDSGIYSCTATNVH-GMDESKGRLIVLHGPSYYEQ 684
++ + + G +LL+ V+ +D+G Y C T H G + R I L E+
Sbjct: 165 LLDKDNEKFLSVRGTTHLLVHDVALEDAGYYRCVLTFAHEGQQYNITRSIELRIKKKKEE 224
Query: 685 LPPKI-----TIAAH--RNLQLRCSAH--TEELLDVAYIWTHNGVRI 722
P I TI+A L + C T L WT N I
Sbjct: 225 TIPVIISPLKTISASLGSRLTIPCKVFLGTGTPLTTMLWWTANDTHI 271
Score = 38.1 bits (87), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 43/177 (24%), Positives = 72/177 (40%), Gaps = 19/177 (10%)
Query: 594 LESETYAGEGGNVTIFCNPEAAPKPKFVWKKDGN---IIGSGGRRKIFENGNLLISPVSR 650
LE E A V + +P+ W K+ + + G R ++G L + P +
Sbjct: 31 LEGEPVALRCPQVPYWLWASVSPRINLTWHKNDSARTVPGEEETRMWAQDGALWLLPALQ 90
Query: 651 DDSGIYSCTATNVHGMDESKGRLIVLHGPSYYEQLP----PKITIAAHRNLQLRC---SA 703
+DSG Y CT N D+ L V + LP P+I + + L C S
Sbjct: 91 EDSGTYVCTTRNASYCDKMSIELRVFENTDAF--LPFISYPQILTLSTSGV-LVCPDLSE 147
Query: 704 HTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGL-LEITNASFADAGEYECVV 759
T + DV W + ++ L++ +++ G L + + + DAG Y CV+
Sbjct: 148 FTRDKTDVKIQWYKD-----SLLLDKDNEKFLSVRGTTHLLVHDVALEDAGYYRCVL 199
>pdb|1ADQ|A Chain A, Crystal Structure Of A Human Igm Rheumatoid Factor Fab In
Complex With Its Autoantigen Igg Fc
Length = 206
Score = 40.4 bits (93), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 48/177 (27%), Positives = 72/177 (40%), Gaps = 31/177 (17%)
Query: 404 PKTFPEAPKAGDKVRLE------CVAFGY----PVPSYNWTRRGSPL------PRNAYFE 447
P F PK D + + CV P +NW G + PR F
Sbjct: 1 PSVFLFPPKPKDTLMISRTPEVTCVVVDVSQEDPQVQFNWYVDGVQVHNAKTKPREQQFN 60
Query: 448 NFNRILTIPNVKVE---DQGEYICRASNDRSALESSVTISIQA------EPN-FTIPLTD 497
+ R++++ V + D EY C+ SN L SS+ +I EP +T+P +
Sbjct: 61 STYRVVSVLTVLHQNWLDGKEYKCKVSN--KGLPSSIEKTISKAKGQPREPQVYTLPPSQ 118
Query: 498 KHM-DNQADLTWTCEAFGVPDVTYSWFRNGELLNS--ETLPLEDQDRYFIQDNVLTI 551
+ M NQ LT + F D+ W NG+ N+ T P+ D D F + LT+
Sbjct: 119 EEMTKNQVSLTCLVKGFYPSDIAVEWESNGQPENNYKTTPPVLDSDGSFFLYSRLTV 175
>pdb|2QL1|A Chain A, Structural Characterization Of A Mutated, Adcc-Enhanced
Human Fc Fragment
Length = 225
Score = 40.0 bits (92), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 35/122 (28%), Positives = 56/122 (45%), Gaps = 11/122 (9%)
Query: 441 PRNAYFENFNRILTIPNVKVED---QGEYICRASNDRSALESSVTIS-IQAEPN----FT 492
PR + + R++++ V +D EY C+ SN L TIS + +P +T
Sbjct: 69 PREEQYNSTYRVVSVLTVLHQDWLNGKEYKCKVSNKALPLPEEKTISKAKGQPREPQVYT 128
Query: 493 IPLTDKHM-DNQADLTWTCEAFGVPDVTYSWFRNGELLNS--ETLPLEDQDRYFIQDNVL 549
+P + + M NQ LT + F D+ W NG+ N+ T P+ D D F + L
Sbjct: 129 LPPSREEMTKNQVSLTCLVKGFYPSDIAVEWESNGQPENNYKTTPPVLDSDGSFFLYSKL 188
Query: 550 TI 551
T+
Sbjct: 189 TV 190
>pdb|3BDW|A Chain A, Human Cd94NKG2A
pdb|3BDW|C Chain C, Human Cd94NKG2A
pdb|3CDG|J Chain J, Human Cd94NKG2A IN COMPLEX WITH HLA-E
pdb|3CDG|E Chain E, Human Cd94NKG2A IN COMPLEX WITH HLA-E
Length = 123
Score = 40.0 bits (92), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 41/85 (48%), Gaps = 7/85 (8%)
Query: 29 CPQHWVQYRDSCYRFVKSPLKTRNDAKLNCKSLDSDLANVNDADEHGFIMYQLFWQDPQR 88
C + WV YR +CY F+ S KT N+++ C S S L + + DE F+ Q+
Sbjct: 5 CQEKWVGYRCNCY-FISSEQKTWNESRHLCASQKSSLLQLQNTDELDFM------SSSQQ 57
Query: 89 RKWYFGGTQQSPNLWVNEDGTNLNE 113
W + W+ E+G+ L++
Sbjct: 58 FYWIGLSYSEEHTAWLWENGSALSQ 82
>pdb|3KVQ|A Chain A, Crystal Structure Of Vegfr2 Extracellular Domain D7
Length = 108
Score = 40.0 bits (92), Expect = 0.006, Method: Composition-based stats.
Identities = 20/59 (33%), Positives = 31/59 (52%), Gaps = 2/59 (3%)
Query: 414 GDKVRLECVAFGYPVPSYNWTRRGSPLPRNA--YFENFNRILTIPNVKVEDQGEYICRA 470
G+ + + C A G P P W + L ++ ++ NR LTI V+ ED+G Y C+A
Sbjct: 25 GESIEVSCTASGNPPPQIMWFKDNETLVEDSGIVLKDGNRNLTIRRVRKEDEGLYTCQA 83
Score = 39.7 bits (91), Expect = 0.007, Method: Composition-based stats.
Identities = 24/83 (28%), Positives = 41/83 (49%), Gaps = 2/83 (2%)
Query: 594 LESETYAGEGGNVTIFCNPEAAPKPKFVWKKDG-NIIGSGGRRKIFENGNLLISPVSRDD 652
LE++T G ++ + C P P+ +W KD ++ G N NL I V ++D
Sbjct: 17 LENQT-TSIGESIEVSCTASGNPPPQIMWFKDNETLVEDSGIVLKDGNRNLTIRRVRKED 75
Query: 653 SGIYSCTATNVHGMDESKGRLIV 675
G+Y+C A +V G + + I+
Sbjct: 76 EGLYTCQACSVLGCAKVEAFFII 98
Score = 36.2 bits (82), Expect = 0.10, Method: Composition-based stats.
Identities = 28/77 (36%), Positives = 35/77 (45%), Gaps = 13/77 (16%)
Query: 207 SILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLSGG--NLIINDPR 264
SI I +SC A G P P WFK++ + LV D L G NL I R
Sbjct: 23 SIGESIEVSCTASGNPPPQIMWFKDN---ETLV-------EDSGIVLKDGNRNLTIRRVR 72
Query: 265 QVEDRGSYHCKASNKFG 281
+ ED G Y C+A + G
Sbjct: 73 K-EDEGLYTCQACSVLG 88
Score = 31.2 bits (69), Expect = 2.9, Method: Composition-based stats.
Identities = 24/88 (27%), Positives = 41/88 (46%), Gaps = 8/88 (9%)
Query: 481 VTISIQAEPNFTIPLTDKHMDNQADLTWTCEAFGVPDVTYSWFRNGELLNSET-LPLEDQ 539
+T+ + P T L ++ + +C A G P WF++ E L ++ + L+D
Sbjct: 3 LTVLERVAPTITGNLENQTTSIGESIEVSCTASGNPPPQIMWFKDNETLVEDSGIVLKDG 62
Query: 540 DRYFIQDNVLTIRYLNPERDPAMYQCRA 567
+R LTIR + E D +Y C+A
Sbjct: 63 NRN------LTIRRVRKE-DEGLYTCQA 83
>pdb|1B6E|A Chain A, Human Cd94
Length = 128
Score = 40.0 bits (92), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 41/85 (48%), Gaps = 7/85 (8%)
Query: 29 CPQHWVQYRDSCYRFVKSPLKTRNDAKLNCKSLDSDLANVNDADEHGFIMYQLFWQDPQR 88
C + WV YR +CY F+ S KT N+++ C S S L + + DE F+ Q+
Sbjct: 10 CQEKWVGYRCNCY-FISSEQKTWNESRHLCASQKSSLLQLQNTDELDFM------SSSQQ 62
Query: 89 RKWYFGGTQQSPNLWVNEDGTNLNE 113
W + W+ E+G+ L++
Sbjct: 63 FYWIGLSYSEEHTAWLWENGSALSQ 87
>pdb|1KOA|A Chain A, Twitchin Kinase Fragment (C.Elegans), Autoregulated
Protein Kinase And Immunoglobulin Domains
Length = 491
Score = 39.7 bits (91), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 38/86 (44%), Gaps = 5/86 (5%)
Query: 586 KPSFKKRPLESETYAGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGN--- 642
+P F +P +E GEG + +C A+ P W KD + + NGN
Sbjct: 376 QPRFIVKPYGTE--VGEGQSANFYCRVIASSPPVVTWHKDDRELKQSVKYMKRYNGNDYG 433
Query: 643 LLISPVSRDDSGIYSCTATNVHGMDE 668
L I+ V DD G Y+ A N +G E
Sbjct: 434 LTINRVKGDDKGEYTVRAKNSYGTKE 459
Score = 30.4 bits (67), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 36/88 (40%), Gaps = 6/88 (6%)
Query: 414 GDKVRLECVAFGYPVPSYNWTRRGSPLPRNA-YFENFNR---ILTIPNVKVEDQGEYICR 469
G C P W + L ++ Y + +N LTI VK +D+GEY R
Sbjct: 391 GQSANFYCRVIASSPPVVTWHKDDRELKQSVKYMKRYNGNDYGLTINRVKGDDKGEYTVR 450
Query: 470 ASNDRSALESSVTISI--QAEPNFTIPL 495
A N E V +++ +EP PL
Sbjct: 451 AKNSYGTKEEIVFLNVTRHSEPLKFEPL 478
>pdb|3B5H|A Chain A, Crystal Structure Of The Extracellular Portion Of
Hab18gCD147
pdb|3B5H|B Chain B, Crystal Structure Of The Extracellular Portion Of
Hab18gCD147
pdb|3B5H|C Chain C, Crystal Structure Of The Extracellular Portion Of
Hab18gCD147
pdb|3B5H|D Chain D, Crystal Structure Of The Extracellular Portion Of
Hab18gCD147
Length = 184
Score = 39.7 bits (91), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 43/186 (23%), Positives = 72/186 (38%), Gaps = 20/186 (10%)
Query: 407 FPEAPKAGDKVRLECVA--FGYPVPSYNWTRRGSPLPRNAYFENFNRILTIPNVKVEDQ- 463
F G K+ L C V + W + G L +A V +DQ
Sbjct: 6 FTTVEDLGSKILLTCSLNDSATEVTGHRWLKGGVVLKEDALPGQKTEF----KVDSDDQW 61
Query: 464 GEYICRASNDRSALESSVTISIQAEPNFTIPLTDKHMDNQADLTWTCEAFGVPDVT-YSW 522
GEY C + + I + P + +H++ C++ VP VT ++W
Sbjct: 62 GEYSCVFLPEPMG---TANIQLHGPPRVKAVKSSEHINEGETAMLVCKSESVPPVTDWAW 118
Query: 523 FRNGELLNSETLPLED--QDRYFIQDNV----LTIRYLNPERDPAMYQCRAKNQLKTRYS 576
++ + +SE L + + R+F+ + L I LN E DP Y+C + + +
Sbjct: 119 YK---ITDSEDKALMNGSESRFFVSSSQGRSELHIENLNMEADPGQYRCNGTSSKGSDQA 175
Query: 577 SAQLRV 582
LRV
Sbjct: 176 IITLRV 181
>pdb|3MTR|A Chain A, Crystal Structure Of The Ig5-Fn1 Tandem Of Human Ncam
pdb|3MTR|B Chain B, Crystal Structure Of The Ig5-Fn1 Tandem Of Human Ncam
Length = 215
Score = 39.3 bits (90), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 40/87 (45%), Gaps = 5/87 (5%)
Query: 599 YAGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRR--KIFENGN---LLISPVSRDDS 653
Y EG V I C A P W +DG ++ S KI+ + L ++P S +D
Sbjct: 29 YTWEGNQVNITCEVFAYPSATISWFRDGQLLPSSNYSNIKIYNTPSASYLEVTPDSENDF 88
Query: 654 GIYSCTATNVHGMDESKGRLIVLHGPS 680
G Y+CTA N G + + L+ PS
Sbjct: 89 GNYNCTAVNRIGQESLEFILVQADTPS 115
Score = 36.2 bits (82), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 35/74 (47%), Gaps = 12/74 (16%)
Query: 502 NQADLTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQDNVLTIRYL----NPE 557
NQ ++T CE F P T SWFR+G+L LP + I N + YL + E
Sbjct: 34 NQVNIT--CEVFAYPSATISWFRDGQL-----LPSSNYSNIKIY-NTPSASYLEVTPDSE 85
Query: 558 RDPAMYQCRAKNQL 571
D Y C A N++
Sbjct: 86 NDFGNYNCTAVNRI 99
Score = 35.4 bits (80), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 38/144 (26%), Positives = 59/144 (40%), Gaps = 26/144 (18%)
Query: 742 LEITNASFADAGEYECVVKSTVGKISTKTTXXXXXXXXXXXXXXXXXXHKTSATIQWTD- 800
LE+T S D G Y C + +G+ S + + ++A +Q+ +
Sbjct: 78 LEVTPDSENDFGNYNCTAVNRIGQESLEFI-LVQADTPSSPSIDQVEPYSSTAQVQFDEP 136
Query: 801 GATNGRPITHYK----IIARTNWNSTWFNVSEHVIGKEVDRYTGRKEASIENV-----LV 851
AT G PI YK + W+S W++ KEAS+E + L
Sbjct: 137 EATGGVPILKYKAEWRAVGEEVWHSKWYDA---------------KEASMEGIVTIVGLK 181
Query: 852 PWSTYEFKVIAGNELGYGEPSSPS 875
P +TY ++ A N G GE S+ S
Sbjct: 182 PETTYAVRLAALNGKGLGEISAAS 205
Score = 33.1 bits (74), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 37/83 (44%), Gaps = 11/83 (13%)
Query: 414 GDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYFENFNRILTIPNVKV--------EDQGE 465
G++V + C F YP + +W R G LP + Y N +I P+ D G
Sbjct: 33 GNQVNITCEVFAYPSATISWFRDGQLLPSSNY-SNI-KIYNTPSASYLEVTPDSENDFGN 90
Query: 466 YICRASNDRSALESSVTISIQAE 488
Y C A N R ES I +QA+
Sbjct: 91 YNCTAVN-RIGQESLEFILVQAD 112
>pdb|3UTO|A Chain A, Twitchin Kinase Region From C.Elegans
(Fn31-Nl-Kin-Crd-Ig26)
pdb|3UTO|B Chain B, Twitchin Kinase Region From C.Elegans
(Fn31-Nl-Kin-Crd-Ig26)
Length = 573
Score = 39.3 bits (90), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 38/86 (44%), Gaps = 5/86 (5%)
Query: 586 KPSFKKRPLESETYAGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGN--- 642
+P F +P +E GEG + +C A+ P W KD + + NGN
Sbjct: 482 QPRFIVKPYGTE--VGEGQSANFYCRVIASSPPVVTWHKDDRELKQSVKYMKRYNGNDYG 539
Query: 643 LLISPVSRDDSGIYSCTATNVHGMDE 668
L I+ V DD G Y+ A N +G E
Sbjct: 540 LTINRVKGDDKGEYTVRAKNSYGTKE 565
Score = 30.0 bits (66), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 31/76 (40%), Gaps = 4/76 (5%)
Query: 414 GDKVRLECVAFGYPVPSYNWTRRGSPLPRNA-YFENFNR---ILTIPNVKVEDQGEYICR 469
G C P W + L ++ Y + +N LTI VK +D+GEY R
Sbjct: 497 GQSANFYCRVIASSPPVVTWHKDDRELKQSVKYMKRYNGNDYGLTINRVKGDDKGEYTVR 556
Query: 470 ASNDRSALESSVTISI 485
A N E V +++
Sbjct: 557 AKNSYGTKEEIVFLNV 572
>pdb|3BDW|B Chain B, Human Cd94NKG2A
pdb|3BDW|D Chain D, Human Cd94NKG2A
pdb|3CDG|K Chain K, Human Cd94NKG2A IN COMPLEX WITH HLA-E
pdb|3CDG|F Chain F, Human Cd94NKG2A IN COMPLEX WITH HLA-E
pdb|3CII|H Chain H, Structure Of Nkg2aCD94 BOUND TO HLA-E
pdb|3CII|J Chain J, Structure Of Nkg2aCD94 BOUND TO HLA-E
Length = 120
Score = 38.9 bits (89), Expect = 0.013, Method: Composition-based stats.
Identities = 15/49 (30%), Positives = 30/49 (61%), Gaps = 1/49 (2%)
Query: 29 CPQHWVQYRDSCYRFVKSPLKTRNDAKLNCKSLDSDLANVNDADEHGFI 77
CP+ W+ Y +SCY ++ +T ++ L C S +S L ++++ +E F+
Sbjct: 7 CPEEWITYSNSCY-YIGKERRTWEESLLACTSKNSSLLSIDNEEEMKFL 54
>pdb|1F97|A Chain A, Soluble Part Of The Junction Adhesion Molecule From Mouse
Length = 212
Score = 38.9 bits (89), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 46/202 (22%), Positives = 83/202 (41%), Gaps = 41/202 (20%)
Query: 415 DKVRLECVAFGYPVPSYNWT-RRGSPLPRNAYFENF-----NRI------LTIPNVKVED 462
+ ++L C G+ P W +GS Y +R+ +T +V +D
Sbjct: 17 ESIKLTCTYSGFSSPRVEWKFVQGSTTALVCYNSQITAPYADRVTFSSSGITFSSVTRKD 76
Query: 463 QGEYICRASNDRSALESSVTISIQ-----AEPNFTIPLTDKHMDNQADLTWTCEAFGVPD 517
GEY C S + V+I + ++P ++P + + N+A LT + E G P
Sbjct: 77 NGEYTCMVSEEGGQNYGEVSIHLTVLVPPSKPTISVP-SSVTIGNRAVLTCS-EHDGSPP 134
Query: 518 VTYSWFRNG-ELLNSETLPLEDQDRYFIQDNVLTIRYLNPER-----------DPAMYQC 565
YSWF++G +L ++ + R F+ + ++P+ D Y C
Sbjct: 135 SEYSWFKDGISMLTADA----KKTRAFMNSSFT----IDPKSGDLIFDPVTAFDSGEYYC 186
Query: 566 RAKNQLKT--RYSSAQLRVLTL 585
+A+N T R +A + + L
Sbjct: 187 QAQNGYGTAMRSEAAHMDAVEL 208
Score = 38.5 bits (88), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 41/91 (45%), Gaps = 5/91 (5%)
Query: 204 SKRSILNDITLSCYA-GGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTL--SGGNLII 260
S +I N L+C G P Y WFK+ A + FT+ G+LI
Sbjct: 114 SSVTIGNRAVLTCSEHDGSPPSEYSWFKDGISMLTADAKKTRAFMNSSFTIDPKSGDLIF 173
Query: 261 NDPRQVEDRGSYHCKASNKFGSII-SESVQL 290
DP D G Y+C+A N +G+ + SE+ +
Sbjct: 174 -DPVTAFDSGEYYCQAQNGYGTAMRSEAAHM 203
Score = 37.0 bits (84), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 43/178 (24%), Positives = 67/178 (37%), Gaps = 23/178 (12%)
Query: 506 LTWTCEAFGVPDVTYSWFRNGE----LLNSE-TLPLEDQDRYFIQDNVLTIRYLNPERDP 560
LT T F P V + + + NS+ T P DR + +T + +D
Sbjct: 21 LTCTYSGFSSPRVEWKFVQGSTTALVCYNSQITAPY--ADRVTFSSSGITFSSVT-RKDN 77
Query: 561 AMYQCRAKNQLKTRYSSAQLRVLTLKPSFKKRPLESETYAGEGGNVTIFCNPE--AAPKP 618
Y C + Y + + L P +P S + GN + E +P
Sbjct: 78 GEYTCMVSEEGGQNYGEVSIHLTVLVP--PSKPTISVPSSVTIGNRAVLTCSEHDGSPPS 135
Query: 619 KFVWKKDG--NIIGSGGRRKIFEN---------GNLLISPVSRDDSGIYSCTATNVHG 665
++ W KDG + + + F N G+L+ PV+ DSG Y C A N +G
Sbjct: 136 EYSWFKDGISMLTADAKKTRAFMNSSFTIDPKSGDLIFDPVTAFDSGEYYCQAQNGYG 193
Score = 36.6 bits (83), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 43/179 (24%), Positives = 66/179 (36%), Gaps = 27/179 (15%)
Query: 212 ITLSCYAGGYPNPSYEWFKEDYVQDRLVA------NLIDPLSDKRFTLSGGNLIINDPRQ 265
I L+C G+ +P EW +VQ A + P +D R T S + + +
Sbjct: 19 IKLTCTYSGFSSPRVEW---KFVQGSTTALVCYNSQITAPYAD-RVTFSSSGITFSSVTR 74
Query: 266 VEDRGSYHCKASNKFGSIISE-SVQLAFGF---IGEFNLKRAPEIGNQNWGKAMFCDPPT 321
+D G Y C S + G E S+ L ++ + IGN+ + C
Sbjct: 75 -KDNGEYTCMVSEEGGQNYGEVSIHLTVLVPPSKPTISVPSSVTIGNR---AVLTCSEHD 130
Query: 322 NYPGVNYYWARDYFPNFVEEDK--RVFVSYD-------GALYFSALEQIDAGNYSCNVQ 371
P Y W +D + K R F++ G L F + D+G Y C Q
Sbjct: 131 GSPPSEYSWFKDGISMLTADAKKTRAFMNSSFTIDPKSGDLIFDPVTAFDSGEYYCQAQ 189
Score = 34.7 bits (78), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 44/189 (23%), Positives = 70/189 (37%), Gaps = 22/189 (11%)
Query: 595 ESETYAGEGGNVTIFCNPEAAPKPKFVWK-----------KDGNIIGSGGRRKIFENGNL 643
+S+ E ++ + C P+ WK + I R F + +
Sbjct: 8 QSDVQVPENESIKLTCTYSGFSSPRVEWKFVQGSTTALVCYNSQITAPYADRVTFSSSGI 67
Query: 644 LISPVSRDDSGIYSCTATNVHGMD--ESKGRLIVLHGPSYYE-QLPPKITIAAHRNLQLR 700
S V+R D+G Y+C + G + E L VL PS +P +TI L
Sbjct: 68 TFSSVTRKDNGEYTCMVSEEGGQNYGEVSIHLTVLVPPSKPTISVPSSVTIG--NRAVLT 125
Query: 701 CSAHTEELLDVAYIWTHNGVRIGNMDLNELET---PNINID--GGLLEITNASFADAGEY 755
CS H + Y W +G+ + D + + ID G L + D+GEY
Sbjct: 126 CSEH-DGSPPSEYSWFKDGISMLTADAKKTRAFMNSSFTIDPKSGDLIFDPVTAFDSGEY 184
Query: 756 ECVVKSTVG 764
C ++ G
Sbjct: 185 YCQAQNGYG 193
>pdb|3C2S|A Chain A, Structural Characterization Of A Human Fc Fragment
Engineered For Lack Of Effector Functions
Length = 225
Score = 38.9 bits (89), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 36/124 (29%), Positives = 58/124 (46%), Gaps = 15/124 (12%)
Query: 441 PRNAYFENFNRILTIPNVKVED---QGEYICRASNDRSALESSVTISIQA------EPN- 490
PR + + R++++ V +D EY C+ SN AL +S+ +I EP
Sbjct: 69 PREEQYNSTYRVVSVLTVLHQDWLNGKEYKCKVSN--KALPASIEKTISKAKGQPREPQV 126
Query: 491 FTIPLTDKHM-DNQADLTWTCEAFGVPDVTYSWFRNGELLNS--ETLPLEDQDRYFIQDN 547
+T+P + + M NQ LT + F D+ W NG+ N+ T P+ D D F +
Sbjct: 127 YTLPPSREEMTKNQVSLTCLVKGFYPSDIAVEWESNGQPENNYKTTPPVLDSDGSFFLYS 186
Query: 548 VLTI 551
LT+
Sbjct: 187 KLTV 190
>pdb|3DNK|A Chain A, Enzyme Deglycosylated Human Igg1 Fc Fragment
pdb|3DNK|B Chain B, Enzyme Deglycosylated Human Igg1 Fc Fragment
Length = 212
Score = 38.5 bits (88), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 45/175 (25%), Positives = 71/175 (40%), Gaps = 27/175 (15%)
Query: 404 PKTFPEAPKAGDKVRLE------CVAFGY----PVPSYNWTRRGSPL------PRNAYFE 447
P F PK D + + CV P +NW G + PR ++
Sbjct: 3 PSVFLFPPKPKDTLMISRTPEVTCVVVDVSHEDPEVKFNWYVDGVEVHNAKTKPREEQYD 62
Query: 448 NFNRILTIPNVKVED---QGEYICRASNDRSALESSVTIS-IQAEPN----FTIPLTDKH 499
+ R++++ V +D EY C+ SN TIS + +P +T+P + +
Sbjct: 63 STYRVVSVLTVLHQDWLNGKEYKCKVSNKALPAPIEKTISKAKGQPREPQVYTLPPSREE 122
Query: 500 M-DNQADLTWTCEAFGVPDVTYSWFRNGELLNS--ETLPLEDQDRYFIQDNVLTI 551
M NQ LT + F D+ W NG+ N+ T P+ D D F + LT+
Sbjct: 123 MTKNQVSLTCLVKGFYPSDIAVEWESNGQPENNYKTTPPVLDSDGSFFLYSKLTV 177
>pdb|2DJU|A Chain A, Solution Structures Of The Fn3 Domain Of Human Receptor-
Type Tyrosine-Protein Phosphatase F
Length = 106
Score = 38.1 bits (87), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 30/81 (37%), Positives = 38/81 (46%), Gaps = 12/81 (14%)
Query: 792 TSATIQWTDGATNGRPITHYKIIARTNWNSTWFNVSEHVIGKEVDRYTGRKEASIENVLV 851
TS T+ W G N P+T+Y I R F + V G RY SI L
Sbjct: 22 TSVTLTWDSG--NSEPVTYYGIQYRAAGTEGPF---QEVDGVATTRY------SIGG-LS 69
Query: 852 PWSTYEFKVIAGNELGYGEPS 872
P+S Y F+V+A N +G G PS
Sbjct: 70 PFSEYAFRVLAVNSIGRGPPS 90
>pdb|2IG2|H Chain H, Dir Primaerstruktur Des Kristallisierbaren Monoklonalen
Immunoglobulins Igg1 Kol. Ii. Aminosaeuresequenz Der L-
Kette, Lambda-Typ, Subgruppe I (German)
Length = 455
Score = 38.1 bits (87), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 54/216 (25%), Positives = 81/216 (37%), Gaps = 29/216 (13%)
Query: 365 NYSCNVQSKVSDTGRNGPFFPLKVFPHSNFQQLKFPNNF--PKTFPEAPKAGDKVRLE-- 420
Y CNV K S+T + P P P F PK D + +
Sbjct: 206 TYICNVNHKPSNTKVDKRVEPKSCDKTHTCPPCPAPELLGGPSVFLFPPKPKDTLMISRT 265
Query: 421 ----CVAFGY----PVPSYNWTRRGSPL------PRNAYFENFNRILTIPNVKVE---DQ 463
CV P +NW G + PR + + R++++ V + D
Sbjct: 266 PEVTCVVVDVSHEDPQVKFNWYVDGVQVHNAKTKPREQQYNSTYRVVSVLTVLHQNWLDG 325
Query: 464 GEYICRASNDRSALESSVTIS-IQAEPN----FTIPLTDKHM-DNQADLTWTCEAFGVPD 517
EY C+ SN TIS + +P +T+P + + M NQ LT + F D
Sbjct: 326 KEYKCKVSNKALPAPIEKTISKAKGQPREPQVYTLPPSREEMTKNQVSLTCLVKGFYPSD 385
Query: 518 VTYSWFRNGELLNS--ETLPLEDQDRYFIQDNVLTI 551
+ W NG+ N+ T P+ D D F + LT+
Sbjct: 386 IAVEWESNGQPENNYKTTPPVLDSDGSFFLYSKLTV 421
>pdb|3RY6|A Chain A, Complex Of Fcgammariia (Cd32) And The Fc Of Human Igg1
pdb|3RY6|B Chain B, Complex Of Fcgammariia (Cd32) And The Fc Of Human Igg1
Length = 214
Score = 37.7 bits (86), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 45/175 (25%), Positives = 70/175 (40%), Gaps = 27/175 (15%)
Query: 404 PKTFPEAPKAGDKVRLE------CVAFGY----PVPSYNWTRRGSPL------PRNAYFE 447
P F PK D + + CV P +NW G + PR +
Sbjct: 8 PSVFLFPPKPKDTLMISRTPEVTCVVVDVSHEDPQVKFNWYVDGVQVHNAKTKPREQQYN 67
Query: 448 NFNRILTIPNVKVE---DQGEYICRASNDRSALESSVTIS-IQAEPN----FTIPLTDKH 499
+ R++++ V + D EY C+ SN TIS + +P +T+P + +
Sbjct: 68 STYRVVSVLTVLHQNWLDGKEYKCKVSNKALPAPIEKTISKAKGQPREPQVYTLPPSREE 127
Query: 500 M-DNQADLTWTCEAFGVPDVTYSWFRNGELLNS--ETLPLEDQDRYFIQDNVLTI 551
M NQ LT + F D+ W NG+ N+ T P+ D D F + LT+
Sbjct: 128 MTKNQVSLTCLVKGFYPSDIAVEWESNGQPENNYKTTPPVLDSDGSFFLYSKLTV 182
>pdb|1H3T|A Chain A, Crystal Structure Of The Human Igg1 Fc-Fragment,Glycoform
(Mn2f)2
pdb|1H3T|B Chain B, Crystal Structure Of The Human Igg1 Fc-Fragment,Glycoform
(Mn2f)2
pdb|1H3U|A Chain A, Crystal Structure Of The Human Igg1 Fc-Fragment,Glycoform
(M3n2f)2
pdb|1H3U|B Chain B, Crystal Structure Of The Human Igg1 Fc-Fragment,Glycoform
(M3n2f)2
pdb|1H3V|A Chain A, Crystal Structure Of The Human Igg1 Fc-Fragment,Glycoform
(G2f)2,Sg P212121
pdb|1H3V|B Chain B, Crystal Structure Of The Human Igg1 Fc-Fragment,Glycoform
(G2f)2,Sg P212121
pdb|1H3W|M Chain M, Crystal Structure Of The Human Igg1 Fc-Fragment,Glycoform
(G2f)2, Sg C2221
pdb|1H3Y|A Chain A, Crystal Structure Of A Human Igg1 Fc-Fragment,High Salt
Condition
pdb|1H3Y|B Chain B, Crystal Structure Of A Human Igg1 Fc-Fragment,High Salt
Condition
pdb|1H3X|A Chain A, Crystal Structure Of The Human Igg1 Fc-Fragment,Glycoform
(G0f)2
pdb|1H3X|B Chain B, Crystal Structure Of The Human Igg1 Fc-Fragment,Glycoform
(G0f)2
Length = 223
Score = 37.7 bits (86), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 34/122 (27%), Positives = 55/122 (45%), Gaps = 11/122 (9%)
Query: 441 PRNAYFENFNRILTIPNVKVE---DQGEYICRASNDRSALESSVTIS-IQAEPN----FT 492
PR + + R++++ V + D EY C+ SN TIS + +P +T
Sbjct: 67 PREQQYNSTYRVVSVLTVLHQNWLDGKEYKCKVSNKALPAPIEKTISKAKGQPREPQVYT 126
Query: 493 IPLTDKHM-DNQADLTWTCEAFGVPDVTYSWFRNGELLNS--ETLPLEDQDRYFIQDNVL 549
+P + + M NQ LT + F D+ W NG+ N+ T P+ D D F + L
Sbjct: 127 LPPSREEMTKNQVSLTCLVKGFYPSDIAVEWESNGQPENNYKTTPPVLDSDGSFFLYSKL 186
Query: 550 TI 551
T+
Sbjct: 187 TV 188
>pdb|1E4K|A Chain A, Crystal Structure Of Soluble Human Igg1 Fc
Fragment-Fc-Gamma Receptor Iii Complex
pdb|1E4K|B Chain B, Crystal Structure Of Soluble Human Igg1 Fc
Fragment-Fc-Gamma Receptor Iii Complex
Length = 225
Score = 37.7 bits (86), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 34/122 (27%), Positives = 55/122 (45%), Gaps = 11/122 (9%)
Query: 441 PRNAYFENFNRILTIPNVKVE---DQGEYICRASNDRSALESSVTIS-IQAEPN----FT 492
PR + + R++++ V + D EY C+ SN TIS + +P +T
Sbjct: 69 PREQQYNSTYRVVSVLTVLHQNWLDGKEYKCKVSNKALPAPIEKTISKAKGQPREPQVYT 128
Query: 493 IPLTDKHM-DNQADLTWTCEAFGVPDVTYSWFRNGELLNS--ETLPLEDQDRYFIQDNVL 549
+P + + M NQ LT + F D+ W NG+ N+ T P+ D D F + L
Sbjct: 129 LPPSREEMTKNQVSLTCLVKGFYPSDIAVEWESNGQPENNYKTTPPVLDSDGSFFLYSKL 188
Query: 550 TI 551
T+
Sbjct: 189 TV 190
>pdb|3DO3|A Chain A, Human 1gg1 Fc Fragment, 2.5 Angstrom Structure
pdb|3DO3|B Chain B, Human 1gg1 Fc Fragment, 2.5 Angstrom Structure
Length = 212
Score = 37.7 bits (86), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 45/175 (25%), Positives = 70/175 (40%), Gaps = 27/175 (15%)
Query: 404 PKTFPEAPKAGDKVRLE------CVAFGY----PVPSYNWTRRGSPL------PRNAYFE 447
P F PK D + + CV P +NW G + PR +
Sbjct: 3 PSVFLFPPKPKDTLMISRTPEVTCVVVDVSHEDPEVKFNWYVDGVEVHNAKTKPREEQYN 62
Query: 448 NFNRILTIPNVKVED---QGEYICRASNDRSALESSVTIS-IQAEPN----FTIPLTDKH 499
+ R++++ V +D EY C+ SN TIS + +P +T+P + +
Sbjct: 63 STYRVVSVLTVLHQDWLNGKEYKCKVSNKALPAPIEKTISKAKGQPREPQVYTLPPSREE 122
Query: 500 M-DNQADLTWTCEAFGVPDVTYSWFRNGELLNS--ETLPLEDQDRYFIQDNVLTI 551
M NQ LT + F D+ W NG+ N+ T P+ D D F + LT+
Sbjct: 123 MTKNQVSLTCLVKGFYPSDIAVEWESNGQPENNYKTTPPVLDSDGSFFLYSKLTV 177
>pdb|1FCC|A Chain A, Crystal Structure Of The C2 Fragment Of Streptococcal
Protein G In Complex With The Fc Domain Of Human Igg
pdb|1FCC|B Chain B, Crystal Structure Of The C2 Fragment Of Streptococcal
Protein G In Complex With The Fc Domain Of Human Igg
Length = 206
Score = 37.7 bits (86), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 45/175 (25%), Positives = 70/175 (40%), Gaps = 27/175 (15%)
Query: 404 PKTFPEAPKAGDKVRLE------CVAFGY----PVPSYNWTRRGSPL------PRNAYFE 447
P F PK D + + CV P +NW G + PR +
Sbjct: 1 PSVFLFPPKPKDTLMISRTPEVTCVVVDVSHEDPQVKFNWYVDGVQVHNAKTKPREQQYN 60
Query: 448 NFNRILTIPNVKVE---DQGEYICRASNDRSALESSVTIS-IQAEPN----FTIPLTDKH 499
+ R++++ V + D EY C+ SN TIS + +P +T+P + +
Sbjct: 61 STYRVVSVLTVLHQNWLDGKEYKCKVSNKALPAPIEKTISKAKGQPREPQVYTLPPSREE 120
Query: 500 M-DNQADLTWTCEAFGVPDVTYSWFRNGELLNS--ETLPLEDQDRYFIQDNVLTI 551
M NQ LT + F D+ W NG+ N+ T P+ D D F + LT+
Sbjct: 121 MTKNQVSLTCLVKGFYPSDIAVEWESNGQPENNYKTTPPVLDSDGSFFLYSKLTV 175
>pdb|3GPR|D Chain D, Crystal Structure Of Rhodocetin
Length = 124
Score = 37.7 bits (86), Expect = 0.035, Method: Composition-based stats.
Identities = 21/51 (41%), Positives = 28/51 (54%), Gaps = 3/51 (5%)
Query: 29 CPQHWVQYRDSCYRFVKSPLKTRNDAKLNC--KSLDSDLANVNDADEHGFI 77
CP HW Y CYR V S LKT DA+ C + S LA+++ +E F+
Sbjct: 1 CPLHWSSYNGYCYR-VFSELKTWEDAESFCYAQHKGSRLASIHSREEEAFV 50
>pdb|1T83|A Chain A, Crystal Structure Of A Human Type Iii Fc Gamma Receptor In
Complex With An Fc Fragment Of Igg1 (Orthorhombic)
pdb|1T83|B Chain B, Crystal Structure Of A Human Type Iii Fc Gamma Receptor In
Complex With An Fc Fragment Of Igg1 (Orthorhombic)
pdb|1T89|A Chain A, Crystal Structure Of A Human Type Iii Fc Gamma Receptor In
Complex With An Fc Fragment Of Igg1 (Hexagonal)
pdb|1T89|B Chain B, Crystal Structure Of A Human Type Iii Fc Gamma Receptor In
Complex With An Fc Fragment Of Igg1 (Hexagonal)
Length = 224
Score = 37.7 bits (86), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 34/122 (27%), Positives = 55/122 (45%), Gaps = 11/122 (9%)
Query: 441 PRNAYFENFNRILTIPNVKVED---QGEYICRASNDRSALESSVTIS-IQAEPN----FT 492
PR + + R++++ V +D EY C+ SN TIS + +P +T
Sbjct: 68 PREEQYNSTYRVVSVLTVLHQDWLNGKEYKCKVSNKALPAPIEKTISKAKGQPREPQVYT 127
Query: 493 IPLTDKHM-DNQADLTWTCEAFGVPDVTYSWFRNGELLNS--ETLPLEDQDRYFIQDNVL 549
+P + + M NQ LT + F D+ W NG+ N+ T P+ D D F + L
Sbjct: 128 LPPSREEMTKNQVSLTCLVKGFYPSDIAVEWESNGQPENNYKTTPPVLDSDGSFFLYSKL 187
Query: 550 TI 551
T+
Sbjct: 188 TV 189
>pdb|1FC1|A Chain A, Crystallographic Refinement And Atomic Models Of A Human
Fc Fragment And Its Complex With Fragment B Of Protein A
From Staphylococcus Aureus At 2.9-And 2.8-Angstroms
Resolution
pdb|1FC1|B Chain B, Crystallographic Refinement And Atomic Models Of A Human
Fc Fragment And Its Complex With Fragment B Of Protein A
From Staphylococcus Aureus At 2.9-And 2.8-Angstroms
Resolution
pdb|1FC2|D Chain D, Crystallographic Refinement And Atomic Models Of A Human
Fc Fragment And Its Complex With Fragment B Of Protein A
From Staphylococcus Aureus At 2.9-and 2.8-angstroms
Resolution
Length = 224
Score = 37.4 bits (85), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 34/122 (27%), Positives = 55/122 (45%), Gaps = 11/122 (9%)
Query: 441 PRNAYFENFNRILTIPNVKVE---DQGEYICRASNDRSALESSVTIS-IQAEPN----FT 492
PR + + R++++ V + D EY C+ SN TIS + +P +T
Sbjct: 69 PREQQYNSTYRVVSVLTVLHQNWLDGKEYKCKVSNKALPAPIEKTISKAKGQPREPQVYT 128
Query: 493 IPLTDKHM-DNQADLTWTCEAFGVPDVTYSWFRNGELLNS--ETLPLEDQDRYFIQDNVL 549
+P + + M NQ LT + F D+ W NG+ N+ T P+ D D F + L
Sbjct: 129 LPPSREEMTKNQVSLTCLVKGFYPSDIAVEWESNGQPENNYKTTPPVLDSDGSFFLYSKL 188
Query: 550 TI 551
T+
Sbjct: 189 TV 190
>pdb|1FRT|C Chain C, Crystal Structure Of The Complex Of Rat Neonatal Fc
Receptor With Fc
Length = 205
Score = 37.4 bits (85), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 44/170 (25%), Positives = 69/170 (40%), Gaps = 25/170 (14%)
Query: 407 FPEAPKAGDKV----RLECVAFGY----PVPSYNWTRRGSPL------PRNAYFENFNRI 452
FP PK + + CV P +NW G + PR + + R+
Sbjct: 5 FPPKPKDTLMISRTPEVTCVVVDVSHEDPQVKFNWYVDGVQVHNAKTKPREQQYNSTYRV 64
Query: 453 LTIPNVKVE---DQGEYICRASNDRSALESSVTIS-IQAEPN----FTIPLTDKHM-DNQ 503
+++ V + D EY C+ SN TIS + +P +T+P + + M NQ
Sbjct: 65 VSVLTVLHQNWLDGKEYKCKVSNKALPAPIEKTISKAKGQPREPQVYTLPPSREEMTKNQ 124
Query: 504 ADLTWTCEAFGVPDVTYSWFRNGELLNS--ETLPLEDQDRYFIQDNVLTI 551
LT + F D+ W NG+ N+ T P+ D D F + LT+
Sbjct: 125 VSLTCLVKGFYPSDIAVEWESNGQPENNYKTTPPVLDSDGSFFLYSKLTV 174
>pdb|1DN2|A Chain A, Fc Fragment Of Human Igg1 In Complex With An Engineered 13
Residue Peptide Dcawhlgelvwct-Nh2
pdb|1DN2|B Chain B, Fc Fragment Of Human Igg1 In Complex With An Engineered 13
Residue Peptide Dcawhlgelvwct-Nh2
Length = 207
Score = 37.4 bits (85), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 45/175 (25%), Positives = 70/175 (40%), Gaps = 27/175 (15%)
Query: 404 PKTFPEAPKAGDKVRLE------CVAFGY----PVPSYNWTRRGSPL------PRNAYFE 447
P F PK D + + CV P +NW G + PR +
Sbjct: 2 PSVFLFPPKPKDTLMISRTPEVTCVVVDVSHENPEVKFNWYVDGVEVHNAKTKPREEQYN 61
Query: 448 NFNRILTIPNVKVED---QGEYICRASNDRSALESSVTIS-IQAEPN----FTIPLTDKH 499
+ R++++ V +D EY C+ SN TIS + +P +T+P + +
Sbjct: 62 STYRVVSVLTVLHQDWLNGKEYKCKVSNKALPAPIEKTISKAKGQPREPQVYTLPPSREE 121
Query: 500 M-DNQADLTWTCEAFGVPDVTYSWFRNGELLNS--ETLPLEDQDRYFIQDNVLTI 551
M NQ LT + F D+ W NG+ N+ T P+ D D F + LT+
Sbjct: 122 MTKNQVSLTCLVKGFYPSDIAVEWESNGQPENNYKTTPPVLDSDGSFFLYSKLTV 176
>pdb|1HZH|H Chain H, Crystal Structure Of The Intact Human Igg B12 With Broad
And Potent Activity Against Primary Hiv-1 Isolates: A
Template For Hiv Vaccine Design
pdb|1HZH|K Chain K, Crystal Structure Of The Intact Human Igg B12 With Broad
And Potent Activity Against Primary Hiv-1 Isolates: A
Template For Hiv Vaccine Design
Length = 457
Score = 37.4 bits (85), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 54/216 (25%), Positives = 81/216 (37%), Gaps = 29/216 (13%)
Query: 365 NYSCNVQSKVSDTGRNGPFFPLKVFPHSNFQQLKFPNNF--PKTFPEAPKAGDKVRLE-- 420
Y CNV K S+T + P P P F PK D + +
Sbjct: 207 TYICNVNHKPSNTKVDKKAEPKSCDKTHTCPPCPAPELLGGPSVFLFPPKPKDTLMISRT 266
Query: 421 ----CVAFGY----PVPSYNWTRRGSPL------PRNAYFENFNRILTIPNVKVED---Q 463
CV P +NW G + PR + + R++++ V +D
Sbjct: 267 PEVTCVVVDVSHEDPEVKFNWYVDGVEVHNAKTKPREEQYNSTYRVVSVLTVLHQDWLNG 326
Query: 464 GEYICRASNDRSALESSVTIS-IQAEPN----FTIPLT-DKHMDNQADLTWTCEAFGVPD 517
EY C+ SN TIS + +P +T+P + D+ NQ LT + F D
Sbjct: 327 KEYKCKVSNKALPAPIEKTISKAKGQPREPQVYTLPPSRDELTKNQVSLTCLVKGFYPSD 386
Query: 518 VTYSWFRNGELLNS--ETLPLEDQDRYFIQDNVLTI 551
+ W NG+ N+ T P+ D D F + LT+
Sbjct: 387 IAVEWESNGQPENNYKTTPPVLDSDGSFFLYSKLTV 422
>pdb|2GJ7|A Chain A, Crystal Structure Of A Ge-GiFC COMPLEX
pdb|2GJ7|B Chain B, Crystal Structure Of A Ge-GiFC COMPLEX
Length = 227
Score = 37.4 bits (85), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 34/122 (27%), Positives = 55/122 (45%), Gaps = 11/122 (9%)
Query: 441 PRNAYFENFNRILTIPNVKVED---QGEYICRASNDRSALESSVTIS-IQAEPN----FT 492
PR + + R++++ V +D EY C+ SN TIS + +P +T
Sbjct: 71 PREEQYNSTYRVVSVLTVLHQDWLNGKEYKCKVSNKALPAPIEKTISKAKGQPREPQVYT 130
Query: 493 IPLTDKHM-DNQADLTWTCEAFGVPDVTYSWFRNGELLNS--ETLPLEDQDRYFIQDNVL 549
+P + + M NQ LT + F D+ W NG+ N+ T P+ D D F + L
Sbjct: 131 LPPSREEMTKNQVSLTCLVKGFYPSDIAVEWESNGQPENNYKTTPPVLDSDGSFFLYSKL 190
Query: 550 TI 551
T+
Sbjct: 191 TV 192
>pdb|3T3A|A Chain A, Crystal Structure Of H107r Mutant Of Extracellular Domain
Of Mouse Receptor Nkr-P1a
pdb|3T3A|B Chain B, Crystal Structure Of H107r Mutant Of Extracellular Domain
Of Mouse Receptor Nkr-P1a
Length = 139
Score = 37.4 bits (85), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 27/97 (27%), Positives = 40/97 (41%), Gaps = 13/97 (13%)
Query: 26 ELRCPQHWVQYRDSCYRFVKSPLKTRNDAKLNCKSLDSDLANVNDADEHGFIM------Y 79
+L CPQ W+ +RD C+R V T + ++C + L + D +E F++ Y
Sbjct: 3 KLECPQDWLSHRDKCFR-VSQVSNTWEEGLVDCDGKGATLMLIQDQEELRFLLDSIKEKY 61
Query: 80 QLFWQD------PQRRKWYFGGTQQSPNLWVNEDGTN 110
FW KW G T S L + D N
Sbjct: 62 NSFWIGLRYTLPDMNWKWINGSTLNSDVLKITGDTEN 98
>pdb|3V8C|A Chain A, Crystal Structure Of Monoclonal Human Anti-Rhesus D Fc
Igg1 T125(Yb20) DOUBLE MUTANT (H310 AND H435 IN K)
pdb|3V8C|B Chain B, Crystal Structure Of Monoclonal Human Anti-Rhesus D Fc
Igg1 T125(Yb20) DOUBLE MUTANT (H310 AND H435 IN K)
Length = 212
Score = 37.0 bits (84), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 45/175 (25%), Positives = 70/175 (40%), Gaps = 27/175 (15%)
Query: 404 PKTFPEAPKAGDKVRLE------CVAFGY----PVPSYNWTRRGSPL------PRNAYFE 447
P F PK D + + CV P +NW G + PR +
Sbjct: 3 PSVFLFPPKPKDTLMISRTPEVTCVVVDVSHEDPEVKFNWYVDGVEVHNAKTKPREEQYN 62
Query: 448 NFNRILTIPNVKVED---QGEYICRASNDRSALESSVTIS-IQAEPN----FTIPLT-DK 498
+ R++++ V +D EY C+ SN TIS + +P +T+P + D+
Sbjct: 63 STYRVVSVLTVLKQDWLNGKEYKCKVSNKALPAPIEKTISKAKGQPREPQVYTLPPSRDE 122
Query: 499 HMDNQADLTWTCEAFGVPDVTYSWFRNGELLNS--ETLPLEDQDRYFIQDNVLTI 551
NQ LT + F D+ W NG+ N+ T P+ D D F + LT+
Sbjct: 123 LTKNQVSLTCLVKGFYPSDIAVEWESNGQPENNYKTTPPVLDSDGSFFLYSKLTV 177
>pdb|4ACP|A Chain A, Deactivation Of Human Igg1 Fc By Endoglycosidase Treatment
pdb|4ACP|B Chain B, Deactivation Of Human Igg1 Fc By Endoglycosidase Treatment
Length = 240
Score = 37.0 bits (84), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 34/122 (27%), Positives = 55/122 (45%), Gaps = 11/122 (9%)
Query: 441 PRNAYFENFNRILTIPNVKVED---QGEYICRASNDRSALESSVTIS-IQAEPN----FT 492
PR + + R++++ V +D EY C+ SN TIS + +P +T
Sbjct: 76 PREEQYNSTYRVVSVLTVLHQDWLNGKEYKCKVSNKALPAPIEKTISKAKGQPREPQVYT 135
Query: 493 IPLT-DKHMDNQADLTWTCEAFGVPDVTYSWFRNGELLNS--ETLPLEDQDRYFIQDNVL 549
+P + D+ NQ LT + F D+ W NG+ N+ T P+ D D F + L
Sbjct: 136 LPPSRDELTKNQVSLTCLVKGFYPSDIAVEWESNGQPENNYKATPPVLDSDGSFFLYSKL 195
Query: 550 TI 551
T+
Sbjct: 196 TV 197
>pdb|1OQO|A Chain A, Complex Between G0 Version Of An Fc Bound To A Minimized
Version Of Protein A Called Mini-Z
pdb|1OQO|B Chain B, Complex Between G0 Version Of An Fc Bound To A Minimized
Version Of Protein A Called Mini-Z
pdb|1OQX|A Chain A, G-2 Glycovariant Of Human Igg Fc Bound To Minimized
Version Of Protein A Called Z34c
pdb|1OQX|B Chain B, G-2 Glycovariant Of Human Igg Fc Bound To Minimized
Version Of Protein A Called Z34c
pdb|3V95|A Chain A, Crystal Structure Of Monoclonal Human Anti-Rhesus D Fc And
Igg1 T125(Yb20) IN THE PRESENCE OF EDTA
pdb|3V95|B Chain B, Crystal Structure Of Monoclonal Human Anti-Rhesus D Fc And
Igg1 T125(Yb20) IN THE PRESENCE OF EDTA
Length = 212
Score = 37.0 bits (84), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 45/175 (25%), Positives = 70/175 (40%), Gaps = 27/175 (15%)
Query: 404 PKTFPEAPKAGDKVRLE------CVAFGY----PVPSYNWTRRGSPL------PRNAYFE 447
P F PK D + + CV P +NW G + PR +
Sbjct: 3 PSVFLFPPKPKDTLMISRTPEVTCVVVDVSHEDPEVKFNWYVDGVEVHNAKTKPREEQYN 62
Query: 448 NFNRILTIPNVKVED---QGEYICRASNDRSALESSVTIS-IQAEPN----FTIPLT-DK 498
+ R++++ V +D EY C+ SN TIS + +P +T+P + D+
Sbjct: 63 STYRVVSVLTVLHQDWLNGKEYKCKVSNKALPAPIEKTISKAKGQPREPQVYTLPPSRDE 122
Query: 499 HMDNQADLTWTCEAFGVPDVTYSWFRNGELLNS--ETLPLEDQDRYFIQDNVLTI 551
NQ LT + F D+ W NG+ N+ T P+ D D F + LT+
Sbjct: 123 LTKNQVSLTCLVKGFYPSDIAVEWESNGQPENNYKTTPPVLDSDGSFFLYSKLTV 177
>pdb|2E9W|A Chain A, Crystal Structure Of The Extracellular Domain Of Kit In
Complex With Stem Cell Factor (Scf)
pdb|2E9W|B Chain B, Crystal Structure Of The Extracellular Domain Of Kit In
Complex With Stem Cell Factor (Scf)
Length = 489
Score = 37.0 bits (84), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 39/89 (43%), Gaps = 10/89 (11%)
Query: 214 LSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLSG---GNLIIN---DPRQVE 267
L C A G+P P+ +W+ + R A+++ P+ + SG G L++ D +
Sbjct: 401 LQCVAAGFPEPTIDWYFCPGTEQRCSASVL-PVDVQTLNSSGPPFGKLVVQSSIDSSAFK 459
Query: 268 DRGSYHCKASNKFGSIISESVQLAFGFIG 296
G+ CKA N G S F F G
Sbjct: 460 HNGTVECKAYNDVGKT---SAYFNFAFKG 485
Score = 32.7 bits (73), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 57/270 (21%), Positives = 103/270 (38%), Gaps = 37/270 (13%)
Query: 412 KAGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYFENFNRILTIPNVKVEDQGEYICRAS 471
+ GD++RL C G+ WT + EN + + G+Y C
Sbjct: 24 RVGDEIRLLCTDPGF----VKWTFE----ILDETNENKQNEWITEKAEATNTGKYTC--- 72
Query: 472 NDRSALESSVTISIQAEPNFTIPLTDKHMDNQADLTWTCEAFGVPDVT-YSWFRNGELLN 530
++ L +S+ + ++ + + +D C P+VT YS L
Sbjct: 73 TNKHGLSNSIYVFVRDPAKLFLVDRSLYGKEDSDTLVRC-PLTDPEVTSYS------LKG 125
Query: 531 SETLPLEDQDRYFIQD--NVLTIRYLNPERDPAMYQCRAKNQLKTRYSSAQLRVLTLKPS 588
+ PL +D FI D + I+ + C + K+ S + +L ++P+
Sbjct: 126 CQGKPLP-KDLRFIPDPKAGIMIKSVKRAYHRLCLHCSVDQEGKSVLS--EKFILKVRPA 182
Query: 589 FKKRPLESETYAG----EGGNVTIFCNPEAAPKPKF-VWKKDGNIIGSGGRRKIFENGN- 642
FK P+ S + A EG T+ C + + WK++ + + + +G+
Sbjct: 183 FKAVPVVSVSKASYLLREGEEFTVTCTIKDVSSSVYSTWKRENSQTKLQEKYNSWHHGDF 242
Query: 643 -------LLISPVSRDDSGIYSCTATNVHG 665
L IS +DSG++ C A N G
Sbjct: 243 NYERQATLTISSARVNDSGVFMCYANNTFG 272
>pdb|2WNG|A Chain A, Complete Extracellular Structure Of Human Signal
Regulatory Protein (Sirp) Alpha
Length = 327
Score = 37.0 bits (84), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 38/145 (26%), Positives = 59/145 (40%), Gaps = 27/145 (18%)
Query: 413 AGDKVRLEC-VAFGYPVPSYNWTRRGSP------------LPR------NAYFENFNRIL 453
AG+ L C V PV W R P PR + EN + +
Sbjct: 17 AGESAILHCTVTSLIPVGPIQWFRGAGPARELIYNQKEGHFPRVTTVSESTKRENMDFSI 76
Query: 454 TIPNVKVEDQGEYIC----RASNDRSALESSVT-ISIQAEPNF-TIPLTDKHMDNQADLT 507
+I N+ D G Y C + S D + T +S++A+P+ + Q ++
Sbjct: 77 SISNITPADAGTYYCVKFRKGSPDTEFKSGAGTELSVRAKPSAPVVSGPAARATPQHTVS 136
Query: 508 WTCEAFGVP--DVTYSWFRNGELLN 530
+TCE+ G D+T WF+NG L+
Sbjct: 137 FTCESHGFSPRDITLKWFKNGNELS 161
>pdb|3D6G|A Chain A, Fc Fragment Of Igg1 (herceptin) With Protein-a Mimetic
Peptide Dendrimer Ligand.
pdb|3D6G|B Chain B, Fc Fragment Of Igg1 (herceptin) With Protein-a Mimetic
Peptide Dendrimer Ligand
Length = 210
Score = 37.0 bits (84), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 45/175 (25%), Positives = 70/175 (40%), Gaps = 27/175 (15%)
Query: 404 PKTFPEAPKAGDKVRLE------CVAFGY----PVPSYNWTRRGSPL------PRNAYFE 447
P F PK D + + CV P +NW G + PR +
Sbjct: 3 PSVFLFPPKPKDTLMISRTPEVTCVVVDVSHEDPEVKFNWYVDGVEVHNAKTKPREEQYN 62
Query: 448 NFNRILTIPNVKVED---QGEYICRASNDRSALESSVTIS-IQAEPN----FTIPLT-DK 498
+ R++++ V +D EY C+ SN TIS + +P +T+P + D+
Sbjct: 63 STYRVVSVLTVLHQDWLNGKEYKCKVSNKALPAPIEKTISKAKGQPREPQVYTLPPSRDE 122
Query: 499 HMDNQADLTWTCEAFGVPDVTYSWFRNGELLNS--ETLPLEDQDRYFIQDNVLTI 551
NQ LT + F D+ W NG+ N+ T P+ D D F + LT+
Sbjct: 123 LTKNQVSLTCLVKGFYPSDIAVEWESNGQPENNYKTTPPVLDSDGSFFLYSKLTV 177
>pdb|2J6E|A Chain A, Crystal Structure Of An Autoimmune Complex Between A Human
Igm Rheumatoid Factor And Igg1 Fc Reveals A Novel Fc
Epitope And Evidence For Affinity Maturation
pdb|2J6E|B Chain B, Crystal Structure Of An Autoimmune Complex Between A Human
Igm Rheumatoid Factor And Igg1 Fc Reveals A Novel Fc
Epitope And Evidence For Affinity Maturation
Length = 232
Score = 37.0 bits (84), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 39/147 (26%), Positives = 63/147 (42%), Gaps = 17/147 (11%)
Query: 422 VAFGYPVPSYNWTRRGSPL------PRNAYFENFNRILTIPNVKVED---QGEYICRASN 472
V+ P +NW G + PR + + R++++ V +D EY C+ SN
Sbjct: 51 VSHEEPEVKFNWYVDGVEVHNAKTKPREEQYNSTYRVVSVLTVLHQDWLNGKEYKCKVSN 110
Query: 473 DRSALESSVTIS-IQAEPN----FTIPLT-DKHMDNQADLTWTCEAFGVPDVTYSWFRNG 526
TIS + +P +T+P + D+ NQ LT + F D+ W NG
Sbjct: 111 KALPAPIEKTISKAKGQPREPQVYTLPPSRDELTKNQVSLTCLVKGFYPSDIAVEWESNG 170
Query: 527 ELLNS--ETLPLEDQDRYFIQDNVLTI 551
+ N+ T P+ D D F + LT+
Sbjct: 171 QPENNYKTTPPVLDSDGSFFLYSKLTV 197
>pdb|3VLG|A Chain A, Crystal Structure Of The W150a Mutant Lox-1 Ctld Showing
Impaired Oxldl Binding
Length = 145
Score = 37.0 bits (84), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 41/84 (48%), Gaps = 5/84 (5%)
Query: 29 CPQHWVQYRDSCYRFVKSPLKTRNDAKLNCKSLDSDLANVNDADEHGFIMYQLFWQDPQR 88
CPQ W+ + ++CY F + C SLD+ L +N + FI + +
Sbjct: 16 CPQDWIAHGENCYLFSSGSFNWEKSQE-KCLSLDAKLLKINSTADLDFIQQAISYSS--- 71
Query: 89 RKWYFGGTQQSPNL-WVNEDGTNL 111
++ G ++++P+ W+ EDG+ L
Sbjct: 72 FPFWMGLSRRNPSYPWLWEDGSPL 95
>pdb|4B7I|A Chain A, Crystal Structure Of Human Igg Fc Bearing Hybrid-Type
Glycans
pdb|4B7I|B Chain B, Crystal Structure Of Human Igg Fc Bearing Hybrid-Type
Glycans
Length = 218
Score = 37.0 bits (84), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 45/175 (25%), Positives = 70/175 (40%), Gaps = 27/175 (15%)
Query: 404 PKTFPEAPKAGDKVRLE------CVAFGY----PVPSYNWTRRGSPL------PRNAYFE 447
P F PK D + + CV P +NW G + PR +
Sbjct: 2 PSVFLFPPKPKDTLMISRTPEVTCVVVDVSHEDPEVKFNWYVDGVEVHNAKTKPREEQYN 61
Query: 448 NFNRILTIPNVKVED---QGEYICRASNDRSALESSVTIS-IQAEPN----FTIPLT-DK 498
+ R++++ V +D EY C+ SN TIS + +P +T+P + D+
Sbjct: 62 STYRVVSVLTVLHQDWLNGKEYKCKVSNKALPAPIEKTISKAKGQPREPQVYTLPPSRDE 121
Query: 499 HMDNQADLTWTCEAFGVPDVTYSWFRNGELLNS--ETLPLEDQDRYFIQDNVLTI 551
NQ LT + F D+ W NG+ N+ T P+ D D F + LT+
Sbjct: 122 LTKNQVSLTCLVKGFYPSDIAVEWESNGQPENNYKATPPVLDSDGSFFLYSKLTV 176
>pdb|3AGV|A Chain A, Crystal Structure Of A Human Igg-Aptamer Complex
pdb|3AGV|B Chain B, Crystal Structure Of A Human Igg-Aptamer Complex
Length = 211
Score = 37.0 bits (84), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 45/175 (25%), Positives = 70/175 (40%), Gaps = 27/175 (15%)
Query: 404 PKTFPEAPKAGDKVRLE------CVAFGY----PVPSYNWTRRGSPL------PRNAYFE 447
P F PK D + + CV P +NW G + PR +
Sbjct: 2 PSVFLFPPKPKDTLMISRTPEVTCVVVDVSHEDPEVKFNWYVDGVEVHNAKTKPREEQYN 61
Query: 448 NFNRILTIPNVKVED---QGEYICRASNDRSALESSVTIS-IQAEPN----FTIPLT-DK 498
+ R++++ V +D EY C+ SN TIS + +P +T+P + D+
Sbjct: 62 STYRVVSVLTVLHQDWLNGKEYKCKVSNKALPAPIEKTISKAKGQPREPQVYTLPPSRDE 121
Query: 499 HMDNQADLTWTCEAFGVPDVTYSWFRNGELLNS--ETLPLEDQDRYFIQDNVLTI 551
NQ LT + F D+ W NG+ N+ T P+ D D F + LT+
Sbjct: 122 LTKNQVSLTCLVKGFYPSDIAVEWESNGQPENNYKTTPPVLDSDGSFFLYSKLTV 176
>pdb|3V7M|A Chain A, Crystal Structure Of Monoclonal Human Anti-Rhesus D Fc
Igg1 T125(Yb20) IN THE PRESENCE OF ZN2+
Length = 209
Score = 37.0 bits (84), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 45/175 (25%), Positives = 70/175 (40%), Gaps = 27/175 (15%)
Query: 404 PKTFPEAPKAGDKVRLE------CVAFGY----PVPSYNWTRRGSPL------PRNAYFE 447
P F PK D + + CV P +NW G + PR +
Sbjct: 3 PSVFLFPPKPKDTLMISRTPEVTCVVVDVSHEDPEVKFNWYVDGVEVHNAKTKPREEQYN 62
Query: 448 NFNRILTIPNVKVED---QGEYICRASNDRSALESSVTIS-IQAEPN----FTIPLT-DK 498
+ R++++ V +D EY C+ SN TIS + +P +T+P + D+
Sbjct: 63 STYRVVSVLTVLHQDWLNGKEYKCKVSNKALPAPIEKTISKAKGQPREPQVYTLPPSRDE 122
Query: 499 HMDNQADLTWTCEAFGVPDVTYSWFRNGELLNS--ETLPLEDQDRYFIQDNVLTI 551
NQ LT + F D+ W NG+ N+ T P+ D D F + LT+
Sbjct: 123 LTKNQVSLTCLVKGFYPSDIAVEWESNGQPENNYKTTPPVLDSDGSFFLYSKLTV 177
>pdb|2EC8|A Chain A, Crystal Structure Of The Exctracellular Domain Of The
Receptor Tyrosine Kinase, Kit
Length = 524
Score = 37.0 bits (84), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 39/89 (43%), Gaps = 10/89 (11%)
Query: 214 LSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLSG---GNLIIN---DPRQVE 267
L C A G+P P+ +W+ + R A+++ P+ + SG G L++ D +
Sbjct: 426 LQCVAAGFPEPTIDWYFCPGTEQRCSASVL-PVDVQTLNSSGPPFGKLVVQSSIDSSAFK 484
Query: 268 DRGSYHCKASNKFGSIISESVQLAFGFIG 296
G+ CKA N G S F F G
Sbjct: 485 HNGTVECKAYNDVGKT---SAYFNFAFKG 510
Score = 33.1 bits (74), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 56/269 (20%), Positives = 101/269 (37%), Gaps = 35/269 (13%)
Query: 412 KAGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYFENFNRILTIPNVKVEDQGEYICRAS 471
+ GD++RL C G+ WT + EN + + G+Y C
Sbjct: 49 RVGDEIRLLCTDPGF----VKWTFE----ILDETNENKQNEWITEKAEATNTGKYTC--- 97
Query: 472 NDRSALESSVTISIQAEPNFTIPLTDKHMDNQADLTWTCEAFGVPDVTYSWFRNGELLNS 531
++ L +S+ + ++ + + D C P+VT N L
Sbjct: 98 TNKHGLSNSIYVFVRDPAKLFLVDRSLYGKEDNDTLVRC-PLTDPEVT-----NYSLKGC 151
Query: 532 ETLPLEDQDRYFIQD--NVLTIRYLNPERDPAMYQCRAKNQLKTRYSSAQLRVLTLKPSF 589
+ PL +D FI D + I+ + C + K+ S + +L ++P+F
Sbjct: 152 QGKPLP-KDLRFIPDPKAGIMIKSVKRAYHRLCLHCSVDQEGKSVLS--EKFILKVRPAF 208
Query: 590 KKRPLESETYAG----EGGNVTIFCNPEAAPKPKF-VWKKDGNIIGSGGRRKIFENGN-- 642
K P+ S + A EG T+ C + + WK++ + + + +G+
Sbjct: 209 KAVPVVSVSKASYLLREGEEFTVTCTIKDVSSSVYSTWKRENSQTKLQEKYNSWHHGDFN 268
Query: 643 ------LLISPVSRDDSGIYSCTATNVHG 665
L IS +DSG++ C A N G
Sbjct: 269 YERQATLTISSARVNDSGVFMCYANNTFG 297
>pdb|2ENS|A Chain A, Solution Structure Of The Third Ig-Like Domain From Human
Advanced Glycosylation End Product-Specific Receptor
Length = 96
Score = 37.0 bits (84), Expect = 0.058, Method: Composition-based stats.
Identities = 26/78 (33%), Positives = 36/78 (46%), Gaps = 7/78 (8%)
Query: 603 GGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTAT- 661
GG VT+ C A P P+ W KDG + + L++ + D G YSC AT
Sbjct: 25 GGTVTLTCEVPAQPSPQIHWMKDGVPLPLP------PSPVLILPEIGPQDQGTYSCVATH 78
Query: 662 NVHGMDESKGRLIVLHGP 679
+ HG ES+ I + P
Sbjct: 79 SSHGPQESRAVSISIIEP 96
>pdb|2DTS|A Chain A, Crystal Structure Of The Defucosylated Fc Fragment From
Human Immunoglobulin G1
pdb|2DTS|B Chain B, Crystal Structure Of The Defucosylated Fc Fragment From
Human Immunoglobulin G1
pdb|3AVE|A Chain A, Crystal Structure Of The Fucosylated Fc Fragment From
Human Immunoglobulin G1
pdb|3AVE|B Chain B, Crystal Structure Of The Fucosylated Fc Fragment From
Human Immunoglobulin G1
pdb|3AY4|A Chain A, Crystal Structure Of Nonfucosylated Fc Complexed With
Bis-Glycosylated Soluble Form Of Fc Gamma Receptor Iiia
pdb|3AY4|B Chain B, Crystal Structure Of Nonfucosylated Fc Complexed With
Bis-Glycosylated Soluble Form Of Fc Gamma Receptor Iiia
Length = 223
Score = 37.0 bits (84), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 34/122 (27%), Positives = 55/122 (45%), Gaps = 11/122 (9%)
Query: 441 PRNAYFENFNRILTIPNVKVED---QGEYICRASNDRSALESSVTIS-IQAEPN----FT 492
PR + + R++++ V +D EY C+ SN TIS + +P +T
Sbjct: 67 PREEQYNSTYRVVSVLTVLHQDWLNGKEYKCKVSNKALPAPIEKTISKAKGQPREPQVYT 126
Query: 493 IPLT-DKHMDNQADLTWTCEAFGVPDVTYSWFRNGELLNS--ETLPLEDQDRYFIQDNVL 549
+P + D+ NQ LT + F D+ W NG+ N+ T P+ D D F + L
Sbjct: 127 LPPSRDELTKNQVSLTCLVKGFYPSDIAVEWESNGQPENNYKTTPPVLDSDGSFFLYSKL 186
Query: 550 TI 551
T+
Sbjct: 187 TV 188
>pdb|3S7G|A Chain A, Aglycosylated Human Igg1 Fc Fragment
pdb|3S7G|B Chain B, Aglycosylated Human Igg1 Fc Fragment
pdb|3S7G|C Chain C, Aglycosylated Human Igg1 Fc Fragment
pdb|3S7G|D Chain D, Aglycosylated Human Igg1 Fc Fragment
Length = 227
Score = 37.0 bits (84), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 34/122 (27%), Positives = 55/122 (45%), Gaps = 11/122 (9%)
Query: 441 PRNAYFENFNRILTIPNVKVED---QGEYICRASNDRSALESSVTIS-IQAEPN----FT 492
PR + + R++++ V +D EY C+ SN TIS + +P +T
Sbjct: 71 PREEQYNSTYRVVSVLTVLHQDWLNGKEYKCKVSNKALPAPIEKTISKAKGQPREPQVYT 130
Query: 493 IPLT-DKHMDNQADLTWTCEAFGVPDVTYSWFRNGELLNS--ETLPLEDQDRYFIQDNVL 549
+P + D+ NQ LT + F D+ W NG+ N+ T P+ D D F + L
Sbjct: 131 LPPSRDELTKNQVSLTCLVKGFYPSDIAVEWESNGQPENNYKTTPPVLDSDGSFFLYSKL 190
Query: 550 TI 551
T+
Sbjct: 191 TV 192
>pdb|1DV8|A Chain A, Crystal Structure Of The Carbohydrate Recognition Domain
Of The H1 Subunit Of The Asialoglycoprotein Receptor
Length = 128
Score = 37.0 bits (84), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 42/97 (43%), Gaps = 7/97 (7%)
Query: 29 CPQHWVQYRDSCYRFVKSPLKTRNDAKLNCKSLDSDLANVNDADEHGFIMYQLFWQDPQR 88
CP +WV++ SCY F +S K DA C+ D+ L V +E F+ + +
Sbjct: 1 CPVNWVEHERSCYWFSRSG-KAWADADNYCRLEDAHLVVVTSWEEQKFVQHHI----GPV 55
Query: 89 RKWYFGGTQQSPNLWVNEDGTNLNELDAAFLPEPADN 125
W Q P WV DGT+ + PE D+
Sbjct: 56 NTWMGLHDQNGPWKWV--DGTDYETGFKNWRPEQPDD 90
>pdb|2WAH|A Chain A, Crystal Structure Of An Igg1 Fc Glycoform (man9glcnac2)
pdb|2WAH|B Chain B, Crystal Structure Of An Igg1 Fc Glycoform (man9glcnac2)
Length = 209
Score = 37.0 bits (84), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 45/175 (25%), Positives = 70/175 (40%), Gaps = 27/175 (15%)
Query: 404 PKTFPEAPKAGDKVRLE------CVAFGY----PVPSYNWTRRGSPL------PRNAYFE 447
P F PK D + + CV P +NW G + PR +
Sbjct: 2 PSVFLFPPKPKDTLMISRTPEVTCVVVDVSHEDPEVKFNWYVDGVEVHNAKTKPREEQYN 61
Query: 448 NFNRILTIPNVKVED---QGEYICRASNDRSALESSVTIS-IQAEPN----FTIPLT-DK 498
+ R++++ V +D EY C+ SN TIS + +P +T+P + D+
Sbjct: 62 STYRVVSVLTVLHQDWLNGKEYKCKVSNKALPAPIEKTISKAKGQPREPQVYTLPPSRDE 121
Query: 499 HMDNQADLTWTCEAFGVPDVTYSWFRNGELLNS--ETLPLEDQDRYFIQDNVLTI 551
NQ LT + F D+ W NG+ N+ T P+ D D F + LT+
Sbjct: 122 LTKNQVSLTCLVKGFYPSDIAVEWESNGQPENNYKATPPVLDSDGSFFLYSKLTV 176
>pdb|3SGJ|A Chain A, Unique Carbohydrate-Carbohydrate Interactions Are Required
For High Affinity Binding Between Fcgiii And Antibodies
Lacking Core Fucose
pdb|3SGJ|B Chain B, Unique Carbohydrate-Carbohydrate Interactions Are Required
For High Affinity Binding Between Fcgiii And Antibodies
Lacking Core Fucose
pdb|3SGK|A Chain A, Unique CarbohydrateCARBOHYDRATE INTERACTIONS ARE REQUIRED
FOR HIGH Affinity Binding Of Fcgiii And Antibodies
Lacking Core Fucose
pdb|3SGK|B Chain B, Unique CarbohydrateCARBOHYDRATE INTERACTIONS ARE REQUIRED
FOR HIGH Affinity Binding Of Fcgiii And Antibodies
Lacking Core Fucose
Length = 225
Score = 36.6 bits (83), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 34/122 (27%), Positives = 55/122 (45%), Gaps = 11/122 (9%)
Query: 441 PRNAYFENFNRILTIPNVKVED---QGEYICRASNDRSALESSVTIS-IQAEPN----FT 492
PR + + R++++ V +D EY C+ SN TIS + +P +T
Sbjct: 69 PREEQYNSTYRVVSVLTVLHQDWLNGKEYKCKVSNKALPAPIEKTISKAKGQPREPQVYT 128
Query: 493 IPLT-DKHMDNQADLTWTCEAFGVPDVTYSWFRNGELLNS--ETLPLEDQDRYFIQDNVL 549
+P + D+ NQ LT + F D+ W NG+ N+ T P+ D D F + L
Sbjct: 129 LPPSRDELTKNQVSLTCLVKGFYPSDIAVEWESNGQPENNYKTTPPVLDSDGSFFLYSKL 188
Query: 550 TI 551
T+
Sbjct: 189 TV 190
>pdb|1L6X|A Chain A, Fc Fragment Of Rituximab Bound To A Minimized Version Of
The B-Domain From Protein A Called Z34c
pdb|2IWG|A Chain A, Complex Between The Pryspry Domain Of Trim21 And Igg Fc
pdb|2IWG|D Chain D, Complex Between The Pryspry Domain Of Trim21 And Igg Fc
Length = 207
Score = 36.6 bits (83), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 45/175 (25%), Positives = 70/175 (40%), Gaps = 27/175 (15%)
Query: 404 PKTFPEAPKAGDKVRLE------CVAFGY----PVPSYNWTRRGSPL------PRNAYFE 447
P F PK D + + CV P +NW G + PR +
Sbjct: 2 PSVFLFPPKPKDTLMISRTPEVTCVVVDVSHEDPEVKFNWYVDGVEVHNAKTKPREEQYN 61
Query: 448 NFNRILTIPNVKVED---QGEYICRASNDRSALESSVTIS-IQAEPN----FTIPLT-DK 498
+ R++++ V +D EY C+ SN TIS + +P +T+P + D+
Sbjct: 62 STYRVVSVLTVLHQDWLNGKEYKCKVSNKALPAPIEKTISKAKGQPREPQVYTLPPSRDE 121
Query: 499 HMDNQADLTWTCEAFGVPDVTYSWFRNGELLNS--ETLPLEDQDRYFIQDNVLTI 551
NQ LT + F D+ W NG+ N+ T P+ D D F + LT+
Sbjct: 122 LTKNQVSLTCLVKGFYPSDIAVEWESNGQPENNYKTTPPVLDSDGSFFLYSKLTV 176
>pdb|3FJT|A Chain A, Crystal Structure Of A Human Fc Fragment Engineered For
Extended Serum Half-life
pdb|3FJT|B Chain B, Crystal Structure Of A Human Fc Fragment Engineered For
Extended Serum Half-life
Length = 209
Score = 36.6 bits (83), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 45/170 (26%), Positives = 69/170 (40%), Gaps = 25/170 (14%)
Query: 407 FPEAPKAGDKVRLE----CVAFGY----PVPSYNWTRRGSPL------PRNAYFENFNRI 452
FP PK + E CV P +NW G + PR + + R+
Sbjct: 8 FPPKPKDTLYITREPEVTCVVVDVSHEDPEVKFNWYVDGVEVHNAKTKPREEQYNSTYRV 67
Query: 453 LTIPNVKVED---QGEYICRASNDRSALESSVTIS-IQAEPN----FTIPLT-DKHMDNQ 503
+++ V +D EY C+ SN TIS + +P +T+P + D+ NQ
Sbjct: 68 VSVLTVLHQDWLNGKEYKCKVSNKALPAPIEKTISKAKGQPREPQVYTLPPSRDELTKNQ 127
Query: 504 ADLTWTCEAFGVPDVTYSWFRNGELLNS--ETLPLEDQDRYFIQDNVLTI 551
LT + F D+ W NG+ N+ T P+ D D F + LT+
Sbjct: 128 VSLTCLVKGFYPSDIAVEWESNGQPENNYKTTPPVLDSDGSFFLYSKLTV 177
>pdb|2EDJ|A Chain A, Solution Structure Of The Fifth Ig-Like Domain From Human
Roundabout Homolog 2
Length = 100
Score = 36.6 bits (83), Expect = 0.070, Method: Composition-based stats.
Identities = 21/63 (33%), Positives = 27/63 (42%), Gaps = 1/63 (1%)
Query: 604 GNVTIFCNPEAAPKPKFVWKKDG-NIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTATN 662
G + C P P W K+G G R I E G L I + D+G Y+C AT+
Sbjct: 24 GTALLKCKATGDPLPVISWLKEGFTFPGRDPRATIQEQGTLQIKNLRISDTGTYTCVATS 83
Query: 663 VHG 665
G
Sbjct: 84 SSG 86
Score = 34.7 bits (78), Expect = 0.27, Method: Composition-based stats.
Identities = 27/91 (29%), Positives = 37/91 (40%), Gaps = 9/91 (9%)
Query: 678 GPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINI 737
GP Q P T+A L+C A + L ++ W G D P I
Sbjct: 7 GPPIILQGPANQTLAVDGTALLKCKATGDPLPVIS--WLKEGFTFPGRD------PRATI 58
Query: 738 -DGGLLEITNASFADAGEYECVVKSTVGKIS 767
+ G L+I N +D G Y CV S+ G+ S
Sbjct: 59 QEQGTLQIKNLRISDTGTYTCVATSSSGETS 89
Score = 33.9 bits (76), Expect = 0.50, Method: Composition-based stats.
Identities = 18/69 (26%), Positives = 29/69 (42%), Gaps = 2/69 (2%)
Query: 419 LECVAFGYPVPSYNWTRRGSPLPRNAYFENFNR--ILTIPNVKVEDQGEYICRASNDRSA 476
L+C A G P+P +W + G P L I N+++ D G Y C A++
Sbjct: 28 LKCKATGDPLPVISWLKEGFTFPGRDPRATIQEQGTLQIKNLRISDTGTYTCVATSSSGE 87
Query: 477 LESSVTISI 485
S + +
Sbjct: 88 TSWSAVLDV 96
Score = 30.8 bits (68), Expect = 3.6, Method: Composition-based stats.
Identities = 23/69 (33%), Positives = 30/69 (43%), Gaps = 11/69 (15%)
Query: 214 LSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLS-GGNLIINDPRQVEDRGSY 272
L C A G P P W KE + P D R T+ G L I + R + D G+Y
Sbjct: 28 LKCKATGDPLPVISWLKEGFTF---------PGRDPRATIQEQGTLQIKNLR-ISDTGTY 77
Query: 273 HCKASNKFG 281
C A++ G
Sbjct: 78 TCVATSSSG 86
>pdb|2WWK|O Chain O, Crystal Structure Of The Titin M10-Obscurin Like 1 Ig F17r
Mutant Complex
Length = 109
Score = 36.6 bits (83), Expect = 0.071, Method: Composition-based stats.
Identities = 26/97 (26%), Positives = 40/97 (41%), Gaps = 5/97 (5%)
Query: 587 PSFKKRPLESETYAGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENG---NL 643
P F +RP +G + C P P VW+K G + + R +G L
Sbjct: 15 PCFLRRPRPVRVVSG--AEAELKCVVLGEPPPVVVWEKGGQQLAASERLSFPADGAEHGL 72
Query: 644 LISPVSRDDSGIYSCTATNVHGMDESKGRLIVLHGPS 680
L++ D+G+Y C A N G + + VL P+
Sbjct: 73 LLTAALPTDAGVYVCRARNAAGEAYAAAAVTVLEPPA 109
Score = 32.3 bits (72), Expect = 1.4, Method: Composition-based stats.
Identities = 22/95 (23%), Positives = 36/95 (37%), Gaps = 9/95 (9%)
Query: 404 PKTFPEAPK-----AGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYF----ENFNRILT 454
P F P+ +G + L+CV G P P W + G L + + L
Sbjct: 14 PPCFLRRPRPVRVVSGAEAELKCVVLGEPPPVVVWEKGGQQLAASERLSFPADGAEHGLL 73
Query: 455 IPNVKVEDQGEYICRASNDRSALESSVTISIQAEP 489
+ D G Y+CRA N ++ +++ P
Sbjct: 74 LTAALPTDAGVYVCRARNAAGEAYAAAAVTVLEPP 108
>pdb|2LE9|A Chain A, Ragec2-S100a13 Tetrameric Complex
pdb|2LE9|D Chain D, Ragec2-S100a13 Tetrameric Complex
Length = 93
Score = 36.6 bits (83), Expect = 0.072, Method: Composition-based stats.
Identities = 26/78 (33%), Positives = 36/78 (46%), Gaps = 7/78 (8%)
Query: 603 GGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTAT- 661
GG VT+ C A P P+ W KDG + + L++ + D G YSC AT
Sbjct: 18 GGTVTLTCEVPAQPSPQIHWMKDGVPLPLP------PSPVLILPEIGPQDQGTYSCVATH 71
Query: 662 NVHGMDESKGRLIVLHGP 679
+ HG ES+ I + P
Sbjct: 72 SSHGPQESRAVSISIIEP 89
>pdb|3QR2|A Chain A, Wild Type Cd147 Ig0 Domain
pdb|3QR2|B Chain B, Wild Type Cd147 Ig0 Domain
Length = 137
Score = 36.6 bits (83), Expect = 0.074, Method: Composition-based stats.
Identities = 28/89 (31%), Positives = 36/89 (40%), Gaps = 22/89 (24%)
Query: 407 FPEAPKA-----GDKVRLECVAFGYPVPSYNWTRRG-------------SPLPR----NA 444
F +AP + G V L C A G PVP W G + L R
Sbjct: 24 FVQAPLSQQRWVGGSVELHCEAVGSPVPEIQWWFEGQGPNDICSQLWDGARLDRVHIHAT 83
Query: 445 YFENFNRILTIPNVKVEDQGEYICRASND 473
Y ++ ++I + ED G Y CRASND
Sbjct: 84 YHQHAASTISIDTLVEEDTGTYECRASND 112
Score = 35.8 bits (81), Expect = 0.10, Method: Composition-based stats.
Identities = 27/102 (26%), Positives = 43/102 (42%), Gaps = 14/102 (13%)
Query: 186 IPRGPY---FIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANL 242
+PRG + F++ P +R + + L C A G P P +W+ E + + + L
Sbjct: 15 VPRGSHMAGFVQAPLS-----QQRWVGGSVELHCEAVGSPVPEIQWWFEGQGPNDICSQL 69
Query: 243 IDPLSDKR------FTLSGGNLIINDPRQVEDRGSYHCKASN 278
D R + + I D ED G+Y C+ASN
Sbjct: 70 WDGARLDRVHIHATYHQHAASTISIDTLVEEDTGTYECRASN 111
>pdb|2OX8|A Chain A, Human Scavenger Receptor C-Type Lectin Carbohydrate-
Recognition Domain.
pdb|2OX8|B Chain B, Human Scavenger Receptor C-Type Lectin Carbohydrate-
Recognition Domain.
pdb|2OX8|C Chain C, Human Scavenger Receptor C-Type Lectin Carbohydrate-
Recognition Domain.
pdb|2OX8|D Chain D, Human Scavenger Receptor C-Type Lectin Carbohydrate-
Recognition Domain
Length = 140
Score = 36.6 bits (83), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 35/82 (42%), Gaps = 4/82 (4%)
Query: 29 CPQHWVQYRDSCYRFVKSPLKTRNDAKLNCKSLDSDLANVNDADEHGFIMYQLFWQDPQR 88
CP HW + D CY F + DAKL C+ S L +N +E +I Q+ +
Sbjct: 5 CPPHWKNFTDKCYYFSVEK-EIFEDAKLFCEDKSSHLVFINTREEQQWIKKQMV---GRE 60
Query: 89 RKWYFGGTQQSPNLWVNEDGTN 110
W + N W DGT+
Sbjct: 61 SHWIGLTDSERENEWKWLDGTS 82
>pdb|1YPO|A Chain A, Human Oxidized Low Density Lipoprotein Receptor Lox-1 P3 1
21 Space Group
pdb|1YPO|B Chain B, Human Oxidized Low Density Lipoprotein Receptor Lox-1 P3 1
21 Space Group
pdb|1YPO|C Chain C, Human Oxidized Low Density Lipoprotein Receptor Lox-1 P3 1
21 Space Group
pdb|1YPO|D Chain D, Human Oxidized Low Density Lipoprotein Receptor Lox-1 P3 1
21 Space Group
pdb|1YPO|E Chain E, Human Oxidized Low Density Lipoprotein Receptor Lox-1 P3 1
21 Space Group
pdb|1YPO|F Chain F, Human Oxidized Low Density Lipoprotein Receptor Lox-1 P3 1
21 Space Group
pdb|1YPO|G Chain G, Human Oxidized Low Density Lipoprotein Receptor Lox-1 P3 1
21 Space Group
pdb|1YPO|H Chain H, Human Oxidized Low Density Lipoprotein Receptor Lox-1 P3 1
21 Space Group
Length = 132
Score = 36.6 bits (83), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 36/89 (40%), Gaps = 15/89 (16%)
Query: 29 CPQHWVQYRDSCYRFVKSPLKTRNDAKLNCKSLDSDLANVNDADEHGFIMYQL------F 82
CPQ W+ + ++CY F + C SLD+ L +N + FI + F
Sbjct: 4 CPQDWIWHGENCYLFSSGSFNWEKSQE-KCLSLDAKLLKINSTADLDFIQQAISYSSFPF 62
Query: 83 WQDPQRRKWYFGGTQQSPNLWVNEDGTNL 111
W RR P LW EDG+ L
Sbjct: 63 WMGLSRR------NPSYPWLW--EDGSPL 83
>pdb|3LRS|L Chain L, Structure Of Pg16, An Antibody With Broad And Potent
Neutralization Of Hiv-1
pdb|3LRS|B Chain B, Structure Of Pg16, An Antibody With Broad And Potent
Neutralization Of Hiv-1
pdb|3LRS|D Chain D, Structure Of Pg16, An Antibody With Broad And Potent
Neutralization Of Hiv-1
pdb|3LRS|F Chain F, Structure Of Pg16, An Antibody With Broad And Potent
Neutralization Of Hiv-1
Length = 211
Score = 36.2 bits (82), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 34/134 (25%), Positives = 60/134 (44%), Gaps = 16/134 (11%)
Query: 453 LTIPNVKVEDQGEYICRASNDRS----ALESSVTISIQ--AEPNFTI--PLTDKHMDNQA 504
LTI + +ED+G+Y C + DRS + VT+ Q A P+ T+ P +++ N+A
Sbjct: 73 LTISGLHIEDEGDYFCSSLTDRSHRIFGGGTKVTVLGQPKAAPSVTLFPPSSEELQANKA 132
Query: 505 DLTWTCEAFGVPDVTYSWFRNGELLNS---ETLPLEDQDRYFIQDNVLTIRYLNPE--RD 559
L F VT +W + + + T P + + + + L+ L PE +
Sbjct: 133 TLVCLISDFYPGAVTVAWKADSSPVKAGVETTTPSKQSNNKYAASSYLS---LTPEQWKS 189
Query: 560 PAMYQCRAKNQLKT 573
Y C+ ++ T
Sbjct: 190 HKSYSCQVTHEGST 203
>pdb|2Y23|A Chain A, Crystal Structure Of The Myomesin Domains My9-My11
Length = 312
Score = 36.2 bits (82), Expect = 0.086, Method: Composition-based stats.
Identities = 25/87 (28%), Positives = 37/87 (42%), Gaps = 10/87 (11%)
Query: 616 PKPKFVWKKDGNIIGSGGRRKIFENGN---LLISPVSRDDSGIYSCTATNVHGM------ 666
PK +F W KD R ++ GN + + DD GIYSC T+ G+
Sbjct: 30 PKSEFSWSKDYVSTEDSPRLEVESKGNKTKMTFKDLGMDDLGIYSCDVTDTDGIASSYLI 89
Query: 667 -DESKGRLIVLHGPSYYEQLPPKITIA 692
+E RL+ L + +P K +A
Sbjct: 90 DEEELKRLLALSHEHKFPTVPVKSELA 116
Score = 30.8 bits (68), Expect = 3.7, Method: Composition-based stats.
Identities = 20/56 (35%), Positives = 31/56 (55%), Gaps = 3/56 (5%)
Query: 621 VWKKDGNIIGSGGRRKIFENG--NLLISPVSRDDSGIYSCTATNVHGMDESKGRLI 674
VW KD I S + F++G LLI+ S+ D+GIY + G D+S+ +L+
Sbjct: 255 VWYKDEREI-SVDEKHDFKDGICTLLITEFSKKDAGIYEVILKDDRGKDKSRLKLV 309
>pdb|1YPQ|A Chain A, Human Oxidized Low Density Lipoprotein Receptor Lox-1
Dioxane Complex
pdb|1YPQ|B Chain B, Human Oxidized Low Density Lipoprotein Receptor Lox-1
Dioxane Complex
pdb|1YPU|A Chain A, Human Oxidized Low Density Lipoprotein Receptor Lox-1 C2
Space Group
pdb|1YPU|B Chain B, Human Oxidized Low Density Lipoprotein Receptor Lox-1 C2
Space Group
pdb|1YXK|A Chain A, Crystal Structure Of Human Lectin-Like Oxidized
Low-Density Lipoprotein Receptor 1 (Lox-1)
Disulfide-Linked Dimer
pdb|1YXK|B Chain B, Crystal Structure Of Human Lectin-Like Oxidized
Low-Density Lipoprotein Receptor 1 (Lox-1)
Disulfide-Linked Dimer
Length = 135
Score = 36.2 bits (82), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 36/89 (40%), Gaps = 15/89 (16%)
Query: 29 CPQHWVQYRDSCYRFVKSPLKTRNDAKLNCKSLDSDLANVNDADEHGFIMYQL------F 82
CPQ W+ + ++CY F + C SLD+ L +N + FI + F
Sbjct: 9 CPQDWIWHGENCYLFSSGSFNWEKSQE-KCLSLDAKLLKINSTADLDFIQQAISYSSFPF 67
Query: 83 WQDPQRRKWYFGGTQQSPNLWVNEDGTNL 111
W RR P LW EDG+ L
Sbjct: 68 WMGLSRR------NPSYPWLW--EDGSPL 88
>pdb|3QQN|A Chain A, The Retinal Specific Cd147 Ig0 Domain: From Molecular
Structure To Biological Activity
pdb|3QQN|B Chain B, The Retinal Specific Cd147 Ig0 Domain: From Molecular
Structure To Biological Activity
Length = 137
Score = 36.2 bits (82), Expect = 0.089, Method: Composition-based stats.
Identities = 28/89 (31%), Positives = 36/89 (40%), Gaps = 22/89 (24%)
Query: 407 FPEAPKA-----GDKVRLECVAFGYPVPSYNWTRRG-------------SPLPR----NA 444
F +AP + G V L C A G PVP W G + L R
Sbjct: 24 FVQAPLSQQRWVGGSVELHCEAVGSPVPEIQWWFEGQGPNDIXSQLWDGARLDRVHIHAT 83
Query: 445 YFENFNRILTIPNVKVEDQGEYICRASND 473
Y ++ ++I + ED G Y CRASND
Sbjct: 84 YHQHAASTISIDTLVEEDTGTYECRASND 112
Score = 35.8 bits (81), Expect = 0.14, Method: Composition-based stats.
Identities = 27/102 (26%), Positives = 43/102 (42%), Gaps = 14/102 (13%)
Query: 186 IPRGPY---FIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANL 242
+PRG + F++ P +R + + L C A G P P +W+ E + + + L
Sbjct: 15 VPRGSHXAGFVQAPLS-----QQRWVGGSVELHCEAVGSPVPEIQWWFEGQGPNDIXSQL 69
Query: 243 IDPLSDKR------FTLSGGNLIINDPRQVEDRGSYHCKASN 278
D R + + I D ED G+Y C+ASN
Sbjct: 70 WDGARLDRVHIHATYHQHAASTISIDTLVEEDTGTYECRASN 111
>pdb|2EDX|A Chain A, Solution Structures Of The Fn3 Domain Of Human Receptor-
Type Tyrosine-Protein Phosphatase F
Length = 134
Score = 36.2 bits (82), Expect = 0.092, Method: Composition-based stats.
Identities = 29/112 (25%), Positives = 45/112 (40%), Gaps = 15/112 (13%)
Query: 872 SSPSPQYNTPADKPYQAPSRXXXXXXXXXDLSISWEPLPREKQNAPNIYYKIFW------ 925
SS + + T P P + + +SW P P + +N Y + +
Sbjct: 5 SSGTIEARTAQSTPSAPPQKVMCVSMGSTTVRVSWVPPPADSRNGVITQYSVAYEAVDGE 64
Query: 926 -RKKNDTEFQSETLKEYGNVGIAVVRIPSEFYYTEYEVKVQAINDVGPGPES 976
R ++ + S + VG+ +TEY V V+A DVGPGPES
Sbjct: 65 DRGRHVVDGISREHSSWDLVGLE--------KWTEYRVWVRAHTDVGPGPES 108
>pdb|2C6U|A Chain A, Crystal Structure Of Human Clec-2 (Clec1b)
Length = 122
Score = 36.2 bits (82), Expect = 0.092, Method: Composition-based stats.
Identities = 26/103 (25%), Positives = 47/103 (45%), Gaps = 6/103 (5%)
Query: 29 CPQHWVQYRDSCYRFVKSPLKTRNDAKLNCKSLDSDLANVNDADEHGFIMYQLFWQDPQR 88
C +W Y DSCY F + L T ++K C +++ L +++ + +I +
Sbjct: 3 CDTNWRYYGDSCYGFFRHNL-TWEESKQYCTDMNATLLKIDNRNIVEYIKAR-----THL 56
Query: 89 RKWYFGGTQQSPNLWVNEDGTNLNELDAAFLPEPADNVQRDYL 131
+W Q+S +W EDG+ ++E FL + N+ Y
Sbjct: 57 IRWVGLSRQKSNEVWKWEDGSVISENMFEFLEDGKGNMNCAYF 99
>pdb|3MUG|A Chain A, Crystal Structure Of Human Fab Pg16, A Broadly Reactive
And Potent Hiv-1 Neutralizing Antibody
pdb|3MUG|C Chain C, Crystal Structure Of Human Fab Pg16, A Broadly Reactive
And Potent Hiv-1 Neutralizing Antibody
pdb|3MUG|E Chain E, Crystal Structure Of Human Fab Pg16, A Broadly Reactive
And Potent Hiv-1 Neutralizing Antibody
pdb|3MUG|G Chain G, Crystal Structure Of Human Fab Pg16, A Broadly Reactive
And Potent Hiv-1 Neutralizing Antibody
pdb|3MUG|I Chain I, Crystal Structure Of Human Fab Pg16, A Broadly Reactive
And Potent Hiv-1 Neutralizing Antibody
pdb|3MUG|K Chain K, Crystal Structure Of Human Fab Pg16, A Broadly Reactive
And Potent Hiv-1 Neutralizing Antibody
Length = 216
Score = 36.2 bits (82), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 34/134 (25%), Positives = 60/134 (44%), Gaps = 16/134 (11%)
Query: 453 LTIPNVKVEDQGEYICRASNDRS----ALESSVTISIQ--AEPNFTI--PLTDKHMDNQA 504
LTI + +ED+G+Y C + DRS + VT+ Q A P+ T+ P +++ N+A
Sbjct: 75 LTISGLHIEDEGDYFCSSLTDRSHRIFGGGTKVTVLGQPKAAPSVTLFPPSSEELQANKA 134
Query: 505 DLTWTCEAFGVPDVTYSWFRNGELLNS---ETLPLEDQDRYFIQDNVLTIRYLNPE--RD 559
L F VT +W + + + T P + + + + L+ L PE +
Sbjct: 135 TLVCLISDFYPGAVTVAWKADSSPVKAGVETTTPSKQSNNKYAASSYLS---LTPEQWKS 191
Query: 560 PAMYQCRAKNQLKT 573
Y C+ ++ T
Sbjct: 192 HKSYSCQVTHEGST 205
>pdb|3MME|L Chain L, Structure And Functional Dissection Of Pg16, An Antibody
With Broad And Potent Neutralization Of Hiv-1
pdb|3MME|B Chain B, Structure And Functional Dissection Of Pg16, An Antibody
With Broad And Potent Neutralization Of Hiv-1
pdb|3MME|D Chain D, Structure And Functional Dissection Of Pg16, An Antibody
With Broad And Potent Neutralization Of Hiv-1
Length = 216
Score = 36.2 bits (82), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 34/134 (25%), Positives = 60/134 (44%), Gaps = 16/134 (11%)
Query: 453 LTIPNVKVEDQGEYICRASNDRS----ALESSVTISIQ--AEPNFTI--PLTDKHMDNQA 504
LTI + +ED+G+Y C + DRS + VT+ Q A P+ T+ P +++ N+A
Sbjct: 75 LTISGLHIEDEGDYFCSSLTDRSHRIFGGGTKVTVLGQPKAAPSVTLFPPSSEELQANKA 134
Query: 505 DLTWTCEAFGVPDVTYSWFRNGELLNS---ETLPLEDQDRYFIQDNVLTIRYLNPE--RD 559
L F VT +W + + + T P + + + + L+ L PE +
Sbjct: 135 TLVCLISDFYPGAVTVAWKADSSPVKAGVETTTPSKQSNNKYAASSYLS---LTPEQWKS 191
Query: 560 PAMYQCRAKNQLKT 573
Y C+ ++ T
Sbjct: 192 HKSYSCQVTHEGST 205
>pdb|1YXJ|A Chain A, Crystal Structure Of Human Lectin-like Oxidized
Low-density Lipoprotein Receptor 1 (lox-1) At Low Ph
pdb|1YXJ|B Chain B, Crystal Structure Of Human Lectin-like Oxidized
Low-density Lipoprotein Receptor 1 (lox-1) At Low Ph
Length = 130
Score = 35.8 bits (81), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 36/89 (40%), Gaps = 15/89 (16%)
Query: 29 CPQHWVQYRDSCYRFVKSPLKTRNDAKLNCKSLDSDLANVNDADEHGFIMYQL------F 82
CPQ W+ + ++CY F + C SLD+ L +N + FI + F
Sbjct: 3 CPQDWIWHGENCYLFSSGSFNWEKSQE-KCLSLDAKLLKINSTADLDFIQQAISYSSFPF 61
Query: 83 WQDPQRRKWYFGGTQQSPNLWVNEDGTNL 111
W RR P LW EDG+ L
Sbjct: 62 WXGLSRR------NPSYPWLW--EDGSPL 82
>pdb|3R4D|A Chain A, Crystal Structure Of Mouse Coronavirus Receptor-Binding
Domain Complexed With Its Murine Receptor
pdb|3R4D|C Chain C, Crystal Structure Of Mouse Coronavirus Receptor-Binding
Domain Complexed With Its Murine Receptor
Length = 208
Score = 35.8 bits (81), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 42/175 (24%), Positives = 68/175 (38%), Gaps = 15/175 (8%)
Query: 593 PLESETYAGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSG--GRRKIFENGNLLISPVSR 650
PL +A GN T + E A +FV + N G GR I+ NG+LL ++
Sbjct: 25 PLALGAFAWYKGNTTAI-DKEIA---RFVPNSNMNFTGQAYSGREIIYSNGSLLFQMITM 80
Query: 651 DDSGIYSCTATNVHGMDESKGRLIVLHGPSYYEQLP-PKITIAAHRNLQLRCSAHTEELL 709
D G+Y+ T+ + +H P L T+ ++ L C ++ +
Sbjct: 81 KDMGVYTLDMTDENYRRTQATVRFHVHQPVTQPFLQVTNTTVKELDSVTLTCLSND---I 137
Query: 710 DVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEITNASFADAGEYECVVKSTVG 764
W N L E ++ + +L I DAGEY+C + + V
Sbjct: 138 GANIQWLFNS-----QSLQLTERMTLSQNNSILRIDPIKREDAGEYQCEISNPVS 187
Score = 32.7 bits (73), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
Query: 249 KRFTLSGGNLIIN-DPRQVEDRGSYHCKASNKFGSIISESVQLAFGF 294
+R TLS N I+ DP + ED G Y C+ SN S S++L F
Sbjct: 154 ERMTLSQNNSILRIDPIKREDAGEYQCEISNPVSVRRSNSIKLDIIF 200
Score = 30.4 bits (67), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 36/149 (24%), Positives = 57/149 (38%), Gaps = 13/149 (8%)
Query: 344 RVFVSYDGALYFSALEQIDAGNYSCNVQSKVSDTGRNGPFFPLKVFPHSNFQQLKFPNNF 403
R + +G+L F + D G Y+ ++ +D ++ H Q F
Sbjct: 64 REIIYSNGSLLFQMITMKDMGVYTLDM----TDENYRRTQATVRFHVHQPVTQ-----PF 114
Query: 404 PKTFPEAPKAGDKVRLECVA--FGYPVPSYNWTRRGSPLPRNAYFENFNRILTIPNVKVE 461
+ K D V L C++ G + + + + L N IL I +K E
Sbjct: 115 LQVTNTTVKELDSVTLTCLSNDIGANI-QWLFNSQSLQLTERMTLSQNNSILRIDPIKRE 173
Query: 462 DQGEYICRASNDRSALES-SVTISIQAEP 489
D GEY C SN S S S+ + I +P
Sbjct: 174 DAGEYQCEISNPVSVRRSNSIKLDIIFDP 202
>pdb|3VPP|A Chain A, Crystal Structure Of The Human Clec9a C-Type Lectin-Like
Domain
pdb|3VPP|B Chain B, Crystal Structure Of The Human Clec9a C-Type Lectin-Like
Domain
Length = 132
Score = 35.8 bits (81), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 27/99 (27%), Positives = 43/99 (43%), Gaps = 14/99 (14%)
Query: 29 CPQHWVQYRDSCYRFVKSPLKTRNDAKLNCKSLDSDLANVNDADEHGFIMYQL------- 81
CP +W+Q R+SCY +V + ++ NC S L + +E FI L
Sbjct: 4 CPNNWIQNRESCY-YVSEIWSIWHTSQENCLKEGSTLLQIESKEEMDFITGSLRKIKGSY 62
Query: 82 -FW----QDPQRRKWYF-GGTQQSPNLWVNEDGTNLNEL 114
+W QD +W + G+ SP L E + N++
Sbjct: 63 DYWVGLSQDGHSGRWLWQDGSSPSPGLLPAERSQSANQV 101
>pdb|1L6Z|A Chain A, Crystal Structure Of Murine Ceacam1a[1,4]: A Coronavirus
Receptor And Cell Adhesion Molecule In The Cea Family
Length = 216
Score = 35.8 bits (81), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 42/175 (24%), Positives = 68/175 (38%), Gaps = 15/175 (8%)
Query: 593 PLESETYAGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSG--GRRKIFENGNLLISPVSR 650
PL +A GN T + E A +FV + N G GR I+ NG+LL ++
Sbjct: 25 PLALGAFAWYKGNTTAI-DKEIA---RFVPNSNMNFTGQAYSGREIIYSNGSLLFQMITM 80
Query: 651 DDSGIYSCTATNVHGMDESKGRLIVLHGPSYYEQLP-PKITIAAHRNLQLRCSAHTEELL 709
D G+Y+ T+ + +H P L T+ ++ L C ++ +
Sbjct: 81 KDMGVYTLDMTDENYRRTQATVRFHVHQPVTQPFLQVTNTTVKELDSVTLTCLSND---I 137
Query: 710 DVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEITNASFADAGEYECVVKSTVG 764
W N L E ++ + +L I DAGEY+C + + V
Sbjct: 138 GANIQWLFNS-----QSLQLTERMTLSQNNSILRIDPIKREDAGEYQCEISNPVS 187
Score = 32.7 bits (73), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
Query: 249 KRFTLSGGNLIIN-DPRQVEDRGSYHCKASNKFGSIISESVQLAFGF 294
+R TLS N I+ DP + ED G Y C+ SN S S++L F
Sbjct: 154 ERMTLSQNNSILRIDPIKREDAGEYQCEISNPVSVRRSNSIKLDIIF 200
Score = 32.7 bits (73), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 37/154 (24%), Positives = 60/154 (38%), Gaps = 13/154 (8%)
Query: 344 RVFVSYDGALYFSALEQIDAGNYSCNVQSKVSDTGRNGPFFPLKVFPHSNFQQLKFPNNF 403
R + +G+L F + D G Y+ ++ +D ++ H Q F
Sbjct: 64 REIIYSNGSLLFQMITMKDMGVYTLDM----TDENYRRTQATVRFHVHQPVTQ-----PF 114
Query: 404 PKTFPEAPKAGDKVRLECVA--FGYPVPSYNWTRRGSPLPRNAYFENFNRILTIPNVKVE 461
+ K D V L C++ G + + + + L N IL I +K E
Sbjct: 115 LQVTNTTVKELDSVTLTCLSNDIGANI-QWLFNSQSLQLTERMTLSQNNSILRIDPIKRE 173
Query: 462 DQGEYICRASNDRSALES-SVTISIQAEPNFTIP 494
D GEY C SN S S S+ + I +P+ +P
Sbjct: 174 DAGEYQCEISNPVSVRRSNSIKLDIIFDPSRLVP 207
>pdb|2DL9|A Chain A, Solution Structure Of The Ig-Like Domain Of Human Leucine-
Rich Repeat-Containing Protein 4
Length = 103
Score = 35.8 bits (81), Expect = 0.12, Method: Composition-based stats.
Identities = 18/47 (38%), Positives = 24/47 (51%)
Query: 634 RRKIFENGNLLISPVSRDDSGIYSCTATNVHGMDESKGRLIVLHGPS 680
R + +G L S V D+G+Y+C TNV G + L V GPS
Sbjct: 55 RISVLNDGTLNFSHVLLSDTGVYTCMVTNVAGNSNASAYLNVSSGPS 101
>pdb|1UEY|A Chain A, Solution Structure Of The First Fibronectin Type Iii
Domain Of Human Kiaa0343 Protein
Length = 127
Score = 35.8 bits (81), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 30/100 (30%), Positives = 45/100 (45%), Gaps = 12/100 (12%)
Query: 793 SATIQWTDGATNGRPITHYKIIARTNWN--STWFNVSEHVIGKEVDRYTGRKEASIENVL 850
S + WT G N PIT + I + W + +E +G + + N L
Sbjct: 32 SVQLSWTPGDDNNSPITKFIIEYEDAMHKPGLWHHQTE---------VSGTQTTAQLN-L 81
Query: 851 VPWSTYEFKVIAGNELGYGEPSSPSPQYNTPADKPYQAPS 890
P+ Y F+V+A N +G PS S QY T A +P + P+
Sbjct: 82 SPYVNYSFRVMAVNSIGKSLPSEASEQYLTKASEPDKNPT 121
>pdb|2XY2|A Chain A, Crystal Structure Of Ncam2 Ig1-2
Length = 189
Score = 35.4 bits (80), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 36/166 (21%), Positives = 63/166 (37%), Gaps = 12/166 (7%)
Query: 413 AGDKVRLECVAFGYPVPSYNWTR-RGSPLPRNAYF----ENFNRILTIPNVKVEDQGEYI 467
G+ C A G P S +W +G + E LTI N +ED G Y
Sbjct: 16 VGESKFFTCTAIGEP-ESIDWYNPQGEKIISTQRVVVQKEGVRSRLTIYNANIEDAGIYR 74
Query: 468 CRASNDRSAL-ESSVTISIQAEPNFTIPLTDKHMDNQADLTWTCEAFGVPDVTYSWFRNG 526
C+A++ + E++V + I + F ++ + D C P SW +
Sbjct: 75 CQATDAKGQTQEATVVLEIYQKLTFREVVSPQEFKQGEDAEVVCRVSSSPAPAVSWLYH- 133
Query: 527 ELLNSETLPLEDQDRYFIQDNVLTIRYLNPERDPAMYQCRAKNQLK 572
N E + D +R+ + N + D +Y+C + + +
Sbjct: 134 ---NEEVTTISD-NRFAMLANNNLQILNINKSDEGIYRCEGRVEAR 175
Score = 34.7 bits (78), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 48/191 (25%), Positives = 78/191 (40%), Gaps = 23/191 (12%)
Query: 490 NFTIPLTDKHMDNQADLTWTCEAFGVPDVTYSWFR-NGELLNSETLPLEDQDRYFIQD-- 546
TI L+ + +TC A G P+ + W+ GE + S R +Q
Sbjct: 4 QVTISLSKVELSVGESKFFTCTAIGEPE-SIDWYNPQGEKIIS-------TQRVVVQKEG 55
Query: 547 --NVLTIRYLNPERDPAMYQCRAKNQLKTRYSSAQLRVLTLKPSFKKRPLESETYAGEGG 604
+ LTI N E D +Y+C+A + K + A + VL + R + S +G
Sbjct: 56 VRSRLTIYNANIE-DAGIYRCQATDA-KGQTQEATV-VLEIYQKLTFREVVSPQEFKQGE 112
Query: 605 NVTIFCNPEAAPKPKFVWKKDGNIIG--SGGRRKIFENGNLLISPVSRDDSGIYSCTATN 662
+ + C ++P P W + S R + N NL I +++ D GIY C
Sbjct: 113 DAEVVCRVSSSPAPAVSWLYHNEEVTTISDNRFAMLANNNLQILNINKSDEGIYRC---- 168
Query: 663 VHGMDESKGRL 673
G E++G +
Sbjct: 169 -EGRVEARGEI 178
>pdb|2VKX|A Chain A, Human Ncam, Fn3 Domains 1 And 2, M610r Mutant
pdb|2VKX|B Chain B, Human Ncam, Fn3 Domains 1 And 2, M610r Mutant
pdb|2VKX|C Chain C, Human Ncam, Fn3 Domains 1 And 2, M610r Mutant
pdb|2VKX|D Chain D, Human Ncam, Fn3 Domains 1 And 2, M610r Mutant
pdb|2VKX|E Chain E, Human Ncam, Fn3 Domains 1 And 2, M610r Mutant
pdb|2VKX|F Chain F, Human Ncam, Fn3 Domains 1 And 2, M610r Mutant
Length = 209
Score = 35.0 bits (79), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 30/106 (28%), Positives = 47/106 (44%), Gaps = 25/106 (23%)
Query: 790 HKTSATIQWTD-GATNGRPITHYKI----IARTNWNSTWFNVSEHVIGKEVDRYTGRKEA 844
+ ++A +Q+ + AT G PI YK + W+S W++ KEA
Sbjct: 20 YSSTAQVQFDEPEATGGVPILKYKAEWRAVGEEVWHSKWYDA---------------KEA 64
Query: 845 SIENV-----LVPWSTYEFKVIAGNELGYGEPSSPSPQYNTPADKP 885
S+E + L P +TY ++ A N G GE S+ S P +P
Sbjct: 65 SMEGIVTIVGLKPETTYAVRLAALNGKGLGEISAASEFKTQPVREP 110
>pdb|3S58|A Chain A, Rage Recognizes Nucleic Acids And Promotes Inflammatory
Responses To Dna
pdb|3S58|B Chain B, Rage Recognizes Nucleic Acids And Promotes Inflammatory
Responses To Dna
pdb|3S59|A Chain A, Rage Recognizes Nucleic Acids And Promotes Inflammatory
Responses To Dna
pdb|3S59|B Chain B, Rage Recognizes Nucleic Acids And Promotes Inflammatory
Responses To Dna
Length = 223
Score = 35.0 bits (79), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 29/113 (25%), Positives = 57/113 (50%), Gaps = 14/113 (12%)
Query: 450 NRILTIPNVKVEDQGEYICRASNDRSALESSVTISIQAEPNFTIPLTDKHMDNQADLT-- 507
N L +P V ++D+G + C+A N R+ E+ ++ + IP + +D+ ++LT
Sbjct: 63 NGSLFLPAVGIQDEGIFRCQAMN-RNGKETKSNYRVRV---YQIPGKPEIVDSASELTAG 118
Query: 508 -----WTCEAFGV-PDVTYSWFRNGELL--NSETLPLEDQDRYFIQDNVLTIR 552
TC + G P T SW +G+ L N + + +++Q R + + T++
Sbjct: 119 VPNKVGTCVSEGSYPAGTLSWHLDGKPLVPNEKGVSVKEQTRRHPETGLFTLQ 171
>pdb|2VKW|A Chain A, Human Ncam, Fn3 Domains 1 And 2
pdb|2VKW|B Chain B, Human Ncam, Fn3 Domains 1 And 2
Length = 209
Score = 35.0 bits (79), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 30/106 (28%), Positives = 47/106 (44%), Gaps = 25/106 (23%)
Query: 790 HKTSATIQWTD-GATNGRPITHYKI----IARTNWNSTWFNVSEHVIGKEVDRYTGRKEA 844
+ ++A +Q+ + AT G PI YK + W+S W++ KEA
Sbjct: 20 YSSTAQVQFDEPEATGGVPILKYKAEWRAVGEEVWHSKWYDA---------------KEA 64
Query: 845 SIENV-----LVPWSTYEFKVIAGNELGYGEPSSPSPQYNTPADKP 885
S+E + L P +TY ++ A N G GE S+ S P +P
Sbjct: 65 SMEGIVTIVGLKPETTYAVRLAALNGKGLGEISAASEFKTQPVREP 110
>pdb|3M9Z|A Chain A, Crystal Structure Of Extracellular Domain Of Mouse Nkr-P1a
Length = 139
Score = 35.0 bits (79), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 26/97 (26%), Positives = 39/97 (40%), Gaps = 13/97 (13%)
Query: 26 ELRCPQHWVQYRDSCYRFVKSPLKTRNDAKLNCKSLDSDLANVNDADEHGFIM------Y 79
+L CPQ W+ +RD C+ V T + ++C + L + D +E F++ Y
Sbjct: 3 KLECPQDWLSHRDKCFH-VSQVSNTWEEGLVDCDGKGATLMLIQDQEELRFLLDSIKEKY 61
Query: 80 QLFWQD------PQRRKWYFGGTQQSPNLWVNEDGTN 110
FW KW G T S L + D N
Sbjct: 62 NSFWIGLRYTLPDMNWKWINGSTLNSDVLKITGDTEN 98
>pdb|2KDG|A Chain A, Solution Structure Of The 1st Ig Domain Of Myotilin
Length = 100
Score = 35.0 bits (79), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 42/90 (46%), Gaps = 4/90 (4%)
Query: 678 GPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINI 737
GP + Q+P ++I R ++ DV+ W NG + + DL+++ +
Sbjct: 4 GPPRFIQVPENMSIDEGRFCRMDFKVSGLPAPDVS--WYLNGRTVQSDDLHKMIVSEKGL 61
Query: 738 DGGLLEITNASFADAGEYECVVKSTVGKIS 767
+ E+ AS DAG Y CV K+ G+ +
Sbjct: 62 HSLIFEVVRAS--DAGAYACVAKNRAGEAT 89
>pdb|2CPC|A Chain A, Solution Structure Of Rsgi Ruh-030, An Ig Like Domain From
Human Cdna
Length = 113
Score = 35.0 bits (79), Expect = 0.22, Method: Composition-based stats.
Identities = 22/74 (29%), Positives = 35/74 (47%), Gaps = 8/74 (10%)
Query: 417 VRLECVAFG----YPVPSYNWTRRGSPLPRNAYF----ENFNRILTIPNVKVEDQGEYIC 468
VRLE V P WT+ G + + E+ R L +P V++ED GEY+C
Sbjct: 26 VRLERVVLTCELCRPWAEVRWTKDGEEVVESPALLLQKEDTVRRLVLPAVQLEDSGEYLC 85
Query: 469 RASNDRSALESSVT 482
++ ++ +VT
Sbjct: 86 EIDDESASFTVTVT 99
>pdb|2E3V|A Chain A, Crystal Structure Of The First Fibronectin Type Iii Domain
Of Neural Cell Adhesion Molecule Splicing Isoform From
Human Muscle Culture Lambda-4.4
pdb|2E3V|B Chain B, Crystal Structure Of The First Fibronectin Type Iii Domain
Of Neural Cell Adhesion Molecule Splicing Isoform From
Human Muscle Culture Lambda-4.4
pdb|2E3V|C Chain C, Crystal Structure Of The First Fibronectin Type Iii Domain
Of Neural Cell Adhesion Molecule Splicing Isoform From
Human Muscle Culture Lambda-4.4
Length = 122
Score = 34.7 bits (78), Expect = 0.23, Method: Composition-based stats.
Identities = 30/106 (28%), Positives = 46/106 (43%), Gaps = 25/106 (23%)
Query: 790 HKTSATIQWTD-GATNGRPITHYKI----IARTNWNSTWFNVSEHVIGKEVDRYTGRKEA 844
+ ++A +Q+ + AT G PI YK + W+S W++ KEA
Sbjct: 19 YSSTAQVQFDEPEATGGVPILKYKAEWRAVGEEVWHSKWYDA---------------KEA 63
Query: 845 SIENV-----LVPWSTYEFKVIAGNELGYGEPSSPSPQYNTPADKP 885
S E + L P +TY ++ A N G GE S+ S P +P
Sbjct: 64 SXEGIVTIVGLKPETTYAVRLAALNGKGLGEISAASEFKTQPVREP 109
>pdb|3CJJ|A Chain A, Crystal Structure Of Human Rage Ligand-Binding Domain
Length = 219
Score = 34.7 bits (78), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 29/113 (25%), Positives = 57/113 (50%), Gaps = 14/113 (12%)
Query: 450 NRILTIPNVKVEDQGEYICRASNDRSALESSVTISIQAEPNFTIPLTDKHMDNQADLT-- 507
N L +P V ++D+G + C+A N R+ E+ ++ + IP + +D+ ++LT
Sbjct: 60 NGSLFLPAVGIQDEGIFRCQAMN-RNGKETKSNYRVRV---YQIPGKPEIVDSASELTAG 115
Query: 508 -----WTCEAFGV-PDVTYSWFRNGELL--NSETLPLEDQDRYFIQDNVLTIR 552
TC + G P T SW +G+ L N + + +++Q R + + T++
Sbjct: 116 VPNKVGTCVSEGSYPAGTLSWHLDGKPLVPNEKGVSVKEQTRRHPETGLFTLQ 168
>pdb|2OX9|A Chain A, Mouse Scavenger Receptor C-Type Lectin
Carbohydrate-Recognition Domain.
pdb|2OX9|B Chain B, Mouse Scavenger Receptor C-Type Lectin
Carbohydrate-Recognition Domain.
pdb|2OX9|C Chain C, Mouse Scavenger Receptor C-Type Lectin
Carbohydrate-Recognition Domain.
pdb|2OX9|D Chain D, Mouse Scavenger Receptor C-Type Lectin
Carbohydrate-Recognition Domain
Length = 140
Score = 34.7 bits (78), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
Query: 29 CPQHWVQYRDSCYRFVKSPLKTRNDAKLNCKSLDSDLANVNDADEHGFI 77
CP HW + D CY F + DAKL C+ S L +N +E +I
Sbjct: 5 CPPHWKNFTDKCYYFSLEK-EIFEDAKLFCEDKSSHLVFINSREEQQWI 52
>pdb|3O3U|N Chain N, Crystal Structure Of Human Receptor For Advanced Glycation
Endproducts (Rage)
Length = 581
Score = 34.7 bits (78), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 29/113 (25%), Positives = 57/113 (50%), Gaps = 14/113 (12%)
Query: 450 NRILTIPNVKVEDQGEYICRASNDRSALESSVTISIQAEPNFTIPLTDKHMDNQADLT-- 507
N L +P V ++D+G + C+A N R+ E+ ++ + IP + +D+ ++LT
Sbjct: 431 NGSLFLPAVGIQDEGIFRCQAMN-RNGKETKSNYRVRV---YQIPGKPEIVDSASELTAG 486
Query: 508 -----WTCEAFGV-PDVTYSWFRNGELL--NSETLPLEDQDRYFIQDNVLTIR 552
TC + G P T SW +G+ L N + + +++Q R + + T++
Sbjct: 487 VPNKVGTCVSEGSYPAGTLSWHLDGKPLVPNEKGVSVKEQTRRHPETGLFTLQ 539
>pdb|4FQP|A Chain A, Crystal Structure Of Human Nectin-Like 5 Full Ectodomain
(D1-D3)
Length = 313
Score = 34.3 bits (77), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 59/283 (20%), Positives = 106/283 (37%), Gaps = 43/283 (15%)
Query: 409 EAPKAGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYFENFNRILTIPNVKVEDQGEYIC 468
+ P + RLE VA R G+ L RNA F ++VED+G Y C
Sbjct: 55 QGPSYSESKRLEFVA----------ARLGAEL-RNASLRMFG-------LRVEDEGNYTC 96
Query: 469 R-ASNDRSALESSVTISIQAEPNFTIPLTDKHMDNQADLTWTC-EAFGVPDVTYSWFRN- 525
+ + + + + + A+P T + + + C G P +W +
Sbjct: 97 LFVTFPQGSRSVDIWLRVLAKPQNTAEVQKVQLTGEPVPMARCVSTGGRPPAQITWHSDL 156
Query: 526 GELLNSETLPLEDQDRYFIQDNV----LTIRYLNPERDPAMYQCRAKNQLKTRYSSAQLR 581
G + N+ +P F+ V L I + + D C+ +++ + QL
Sbjct: 157 GGMPNTSQVP------GFLSGTVTVTSLWILVPSSQVDGKNVTCKVEHE---SFEKPQLL 207
Query: 582 VLTLK----PSFKKRPLESETYAGEGGNVTIFCNPEAAPKPK-FVWKKDGNIIGSGGRRK 636
+ L P ++ Y G+ T+ C+ + P+P + W +G
Sbjct: 208 TVNLTVYYPPEVSISGYDNNWYLGQN-EATLTCDARSNPEPTGYNWS---TTMGPLPPFA 263
Query: 637 IFENGNLLISPVSRDDSGIYSCTATNVHGMDESKGRLIVLHGP 679
+ + LLI PV + + C TN G +++ + V GP
Sbjct: 264 VAQGAQLLIRPVDKPINTTLICNVTNALGARQAELTVQVKEGP 306
>pdb|2WP3|T Chain T, Crystal Structure Of The Titin M10-Obscurin Like 1 Ig
Complex
pdb|2WWK|T Chain T, Crystal Structure Of The Titin M10-Obscurin Like 1 Ig F17r
Mutant Complex
pdb|2WWM|D Chain D, Crystal Structure Of The Titin M10-Obscurin Like 1 Ig
Complex In Space Group P1
pdb|2WWM|T Chain T, Crystal Structure Of The Titin M10-Obscurin Like 1 Ig
Complex In Space Group P1
pdb|2Y9R|T Chain T, Crystal Structure Of The M10 Domain Of Titin
Length = 102
Score = 34.3 bits (77), Expect = 0.38, Method: Composition-based stats.
Identities = 27/86 (31%), Positives = 38/86 (44%), Gaps = 7/86 (8%)
Query: 590 KKRPLESETYAGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGS--GGRRKIFENGN----L 643
K L S+ EG +T+ C P P+ W G I S GR I EN + L
Sbjct: 9 KIEALPSDISIDEGKVLTVACAFTGEPTPEVTWSCGGRKIHSQEQGRFHI-ENTDDLTTL 67
Query: 644 LISPVSRDDSGIYSCTATNVHGMDES 669
+I V + D G+Y+ + N G D +
Sbjct: 68 IIMDVQKQDGGLYTLSLGNEFGSDSA 93
>pdb|3KNB|A Chain A, Crystal Structure Of The Titin C-Terminus In Complex With
Obscurin- Like 1
pdb|3Q5O|A Chain A, Crystal Structure Of Human Titin Domain M10
pdb|3Q5O|B Chain B, Crystal Structure Of Human Titin Domain M10
Length = 100
Score = 33.9 bits (76), Expect = 0.42, Method: Composition-based stats.
Identities = 27/86 (31%), Positives = 38/86 (44%), Gaps = 7/86 (8%)
Query: 590 KKRPLESETYAGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGS--GGRRKIFENGN----L 643
K L S+ EG +T+ C P P+ W G I S GR I EN + L
Sbjct: 7 KIEALPSDISIDEGKVLTVACAFTGEPTPEVTWSCGGRKIHSQEQGRFHI-ENTDDLTTL 65
Query: 644 LISPVSRDDSGIYSCTATNVHGMDES 669
+I V + D G+Y+ + N G D +
Sbjct: 66 IIMDVQKQDGGLYTLSLGNEFGSDSA 91
>pdb|2YR3|A Chain A, Solution Structure Of The Fourth Ig-Like Domain From
Myosin Light Chain Kinase, Smooth Muscle
Length = 99
Score = 33.9 bits (76), Expect = 0.44, Method: Composition-based stats.
Identities = 21/74 (28%), Positives = 29/74 (39%), Gaps = 1/74 (1%)
Query: 414 GDKVRLECVAFGYPVPSYNWTRRGSPLP-RNAYFENFNRILTIPNVKVEDQGEYICRASN 472
G L+C G PVP W G P+ + E L I + ED G Y C A N
Sbjct: 26 GQDFVLQCSVRGTPVPRITWLLNGQPIQYARSTCEAGVAELHIQDALPEDHGTYTCLAEN 85
Query: 473 DRSALESSVTISIQ 486
+ S +++
Sbjct: 86 ALGQVSCSAWVTVH 99
Score = 30.8 bits (68), Expect = 3.5, Method: Composition-based stats.
Identities = 20/66 (30%), Positives = 27/66 (40%), Gaps = 4/66 (6%)
Query: 602 EGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENG--NLLISPVSRDDSGIYSCT 659
EG + + C+ P P+ W +G I R E G L I +D G Y+C
Sbjct: 25 EGQDFVLQCSVRGTPVPRITWLLNGQPIQYA--RSTCEAGVAELHIQDALPEDHGTYTCL 82
Query: 660 ATNVHG 665
A N G
Sbjct: 83 AENALG 88
>pdb|2HAZ|A Chain A, Crystal Structure Of The First Fibronectin Domain Of Human
Ncam1
Length = 105
Score = 33.9 bits (76), Expect = 0.49, Method: Composition-based stats.
Identities = 29/102 (28%), Positives = 45/102 (44%), Gaps = 25/102 (24%)
Query: 790 HKTSATIQWTD-GATNGRPITHYKI----IARTNWNSTWFNVSEHVIGKEVDRYTGRKEA 844
+ ++A +Q+ + AT G PI YK + W+S W++ KEA
Sbjct: 18 YSSTAQVQFDEPEATGGVPILKYKAEWRAVGEEVWHSKWYDA---------------KEA 62
Query: 845 SIENV-----LVPWSTYEFKVIAGNELGYGEPSSPSPQYNTP 881
S+E + L P +TY ++ A N G GE S+ S P
Sbjct: 63 SMEGIVTIVGLKPETTYAVRLAALNGKGLGEISAASEFKTQP 104
>pdb|3NCM|A Chain A, Neural Cell Adhesion Molecule, Module 2, Nmr, 20
Structures
Length = 92
Score = 33.9 bits (76), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 30/72 (41%), Gaps = 4/72 (5%)
Query: 589 FKKRPLESETYAGEGGNVTIFCNPEAAPKPKFVWKKDGN--IIGSGGRRKIFENGNLLIS 646
FK P E GE + I C+ ++ P +WK G I+ R + N L I
Sbjct: 4 FKNAPTPQEFKEGE--DAVIVCDVVSSLPPTIIWKHKGRDVILKKDVRFIVLSNNYLQIR 61
Query: 647 PVSRDDSGIYSC 658
+ + D G Y C
Sbjct: 62 GIKKTDEGTYRC 73
>pdb|2XR6|A Chain A, Crystal Structure Of The Complex Of The Carbohydrate
Recognition Domain Of Human Dc-Sign With Pseudo
Trimannoside Mimic
Length = 170
Score = 33.5 bits (75), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 14/52 (26%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
Query: 29 CPQHWVQYRDSCYRFVKSPLKTRNDAKLNCKSLDSDLANVNDADEHGFIMYQ 80
CP W ++ +CY F+ + + +D+ CK + + L + A+E F+ Q
Sbjct: 22 CPWEWTFFQGNCY-FMSNSQRNWHDSITACKEVGAQLVVIKSAEEQNFLQLQ 72
>pdb|3GO1|L Chain L, Crystal Structure Of Anti-Hiv-1 Fab 268-D In Complex With
V3 Peptide Mn
Length = 209
Score = 33.5 bits (75), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 36/158 (22%), Positives = 67/158 (42%), Gaps = 18/158 (11%)
Query: 431 YNWTRRGSPLPR--NAYFENFNRILTIPNVKVEDQGEYICRASNDRS----ALESSVTIS 484
Y T+R S +P + LTI V+ ED+ +Y C++++ + VT+
Sbjct: 48 YKDTKRPSGIPERFSGSTSGTTVTLTISGVQAEDEADYYCQSADSSGDYVFGGGTKVTVL 107
Query: 485 IQAEPNFTI----PLTDKHMDNQADLTWTCEAFGVPDVTYSWFRNGELLNS---ETLPLE 537
Q + N T+ P +++ N+A L F VT +W +G + + T P +
Sbjct: 108 GQPKANPTVTLFPPSSEELQANKATLVCLISDFYPGAVTVAWKADGSPVKAGVETTKPSK 167
Query: 538 DQDRYFIQDNVLTIRYLNPE--RDPAMYQCRAKNQLKT 573
+ + + L+ L PE + Y C+ ++ T
Sbjct: 168 QSNNKYAASSYLS---LTPEQWKSHRSYSCQVTHEGST 202
>pdb|2AFP|A Chain A, The Solution Structure Of Type Ii Antifreeze Protein
Reveals A New Member Of The Lectin Family
Length = 129
Score = 33.5 bits (75), Expect = 0.61, Method: Composition-based stats.
Identities = 23/84 (27%), Positives = 32/84 (38%), Gaps = 6/84 (7%)
Query: 29 CPQHWVQYRDSCYRFVKSPLKTRNDAKLNCKSLDSDLANVNDADEHGFIMYQLFWQDPQR 88
CP W D C + + + T A+ NC L LA+++ +EH FI
Sbjct: 7 CPAGWQPLGDRCIYYETTAM-TWALAETNCMKLGGHLASIHSQEEHSFIQTL-----NAG 60
Query: 89 RKWYFGGTQQSPNLWVNEDGTNLN 112
W G W DGT +N
Sbjct: 61 VVWIGGSACLQAGAWTWSDGTPMN 84
>pdb|2WP3|O Chain O, Crystal Structure Of The Titin M10-Obscurin Like 1 Ig
Complex
pdb|2WWM|C Chain C, Crystal Structure Of The Titin M10-Obscurin Like 1 Ig
Complex In Space Group P1
pdb|2WWM|O Chain O, Crystal Structure Of The Titin M10-Obscurin Like 1 Ig
Complex In Space Group P1
Length = 109
Score = 33.5 bits (75), Expect = 0.66, Method: Composition-based stats.
Identities = 22/81 (27%), Positives = 34/81 (41%), Gaps = 3/81 (3%)
Query: 603 GGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENG---NLLISPVSRDDSGIYSCT 659
G + C P P VW+K G + + R +G LL++ D+G+Y C
Sbjct: 29 GAEAELKCVVLGEPPPVVVWEKGGQQLAASERLSFPADGAEHGLLLTAALPTDAGVYVCR 88
Query: 660 ATNVHGMDESKGRLIVLHGPS 680
A N G + + VL P+
Sbjct: 89 ARNAAGEAYAAAAVTVLEPPA 109
Score = 32.3 bits (72), Expect = 1.2, Method: Composition-based stats.
Identities = 22/91 (24%), Positives = 36/91 (39%), Gaps = 6/91 (6%)
Query: 403 FPKTFPEAPKAGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYF----ENFNRILTIPNV 458
FP+ P +G + L+CV G P P W + G L + + L +
Sbjct: 20 FPR--PVRVVSGAEAELKCVVLGEPPPVVVWEKGGQQLAASERLSFPADGAEHGLLLTAA 77
Query: 459 KVEDQGEYICRASNDRSALESSVTISIQAEP 489
D G Y+CRA N ++ +++ P
Sbjct: 78 LPTDAGVYVCRARNAAGEAYAAAAVTVLEPP 108
>pdb|2XR5|A Chain A, Crystal Structure Of The Complex Of The Carbohydrate
Recognition Domain Of Human Dc-Sign With Pseudo
Dimannoside Mimic
Length = 166
Score = 33.1 bits (74), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 14/52 (26%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
Query: 29 CPQHWVQYRDSCYRFVKSPLKTRNDAKLNCKSLDSDLANVNDADEHGFIMYQ 80
CP W ++ +CY F+ + + +D+ CK + + L + A+E F+ Q
Sbjct: 18 CPWEWTFFQGNCY-FMSNSQRNWHDSITACKEVGAQLVVIKSAEEQNFLQLQ 68
>pdb|3MUH|L Chain L, Crystal Structure Of Pg9 Light Chain
Length = 216
Score = 33.1 bits (74), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 30/134 (22%), Positives = 60/134 (44%), Gaps = 16/134 (11%)
Query: 453 LTIPNVKVEDQGEYICRA--SNDRSALESSVTISI----QAEPNFTI--PLTDKHMDNQA 504
LTI ++ ED+G+Y C++ S R + +++ +A P+ T+ P +++ N+A
Sbjct: 75 LTISGLQAEDEGDYYCKSLTSTRRRVFGTGTKLTVLGQPKAAPSVTLFPPSSEELQANKA 134
Query: 505 DLTWTCEAFGVPDVTYSWFRNGELLNS---ETLPLEDQDRYFIQDNVLTIRYLNPE--RD 559
L F VT +W + + + T P + + + + L+ L PE +
Sbjct: 135 TLVCLISDFYPGAVTVAWKADSSPVKAGVETTTPSKQSNNKYAASSYLS---LTPEQWKS 191
Query: 560 PAMYQCRAKNQLKT 573
Y C+ ++ T
Sbjct: 192 HKSYSCQVTHEGST 205
>pdb|2B6B|D Chain D, Cryo Em Structure Of Dengue Complexed With Crd Of
Dc-Sign
Length = 175
Score = 33.1 bits (74), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 14/52 (26%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
Query: 29 CPQHWVQYRDSCYRFVKSPLKTRNDAKLNCKSLDSDLANVNDADEHGFIMYQ 80
CP W ++ +CY F+ + + +D+ CK + + L + A+E F+ Q
Sbjct: 27 CPWEWTFFQGNCY-FMSNSQRNWHDSITACKEVGAQLVVIKSAEEQNFLQLQ 77
>pdb|3U2S|L Chain L, Crystal Structure Of Pg9 Fab In Complex With V1v2 Region
From Hiv-1 Strain Zm109
pdb|3U2S|B Chain B, Crystal Structure Of Pg9 Fab In Complex With V1v2 Region
From Hiv-1 Strain Zm109
pdb|3U36|L Chain L, Crystal Structure Of Pg9 Fab
pdb|3U36|B Chain B, Crystal Structure Of Pg9 Fab
pdb|3U36|D Chain D, Crystal Structure Of Pg9 Fab
pdb|3U36|F Chain F, Crystal Structure Of Pg9 Fab
pdb|3U4E|L Chain L, Crystal Structure Of Pg9 Fab In Complex With V1v2 Region
From Hiv-1 Strain Cap45
pdb|3U4E|B Chain B, Crystal Structure Of Pg9 Fab In Complex With V1v2 Region
From Hiv-1 Strain Cap45
Length = 216
Score = 33.1 bits (74), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 30/134 (22%), Positives = 60/134 (44%), Gaps = 16/134 (11%)
Query: 453 LTIPNVKVEDQGEYICRA--SNDRSALESSVTISI----QAEPNFTI--PLTDKHMDNQA 504
LTI ++ ED+G+Y C++ S R + +++ +A P+ T+ P +++ N+A
Sbjct: 75 LTISGLQAEDEGDYYCKSLTSTRRRVFGTGTKLTVLGQPKAAPSVTLFPPSSEELQANKA 134
Query: 505 DLTWTCEAFGVPDVTYSWFRNGELLNS---ETLPLEDQDRYFIQDNVLTIRYLNPE--RD 559
L F VT +W + + + T P + + + + L+ L PE +
Sbjct: 135 TLVCLISDFYPGAVTVAWKADSSPVKAGVETTTPSKQSNNKYAASSYLS---LTPEQWKS 191
Query: 560 PAMYQCRAKNQLKT 573
Y C+ ++ T
Sbjct: 192 HKSYSCQVTHEGST 205
>pdb|1K9I|A Chain A, Complex Of Dc-Sign And Glcnac2man3
pdb|1K9I|B Chain B, Complex Of Dc-Sign And Glcnac2man3
pdb|1K9I|C Chain C, Complex Of Dc-Sign And Glcnac2man3
pdb|1K9I|D Chain D, Complex Of Dc-Sign And Glcnac2man3
pdb|1K9I|E Chain E, Complex Of Dc-Sign And Glcnac2man3
pdb|1K9I|F Chain F, Complex Of Dc-Sign And Glcnac2man3
pdb|1K9I|G Chain G, Complex Of Dc-Sign And Glcnac2man3
pdb|1K9I|H Chain H, Complex Of Dc-Sign And Glcnac2man3
pdb|1K9I|I Chain I, Complex Of Dc-Sign And Glcnac2man3
pdb|1K9I|J Chain J, Complex Of Dc-Sign And Glcnac2man3
Length = 156
Score = 32.7 bits (73), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 14/52 (26%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
Query: 29 CPQHWVQYRDSCYRFVKSPLKTRNDAKLNCKSLDSDLANVNDADEHGFIMYQ 80
CP W ++ +CY F+ + + +D+ CK + + L + A+E F+ Q
Sbjct: 8 CPWEWTFFQGNCY-FMSNSQRNWHDSITACKEVGAQLVVIKSAEEQNFLQLQ 58
>pdb|1SL4|A Chain A, Crystal Structure Of Dc-Sign Carbohydrate Recognition
Domain Complexed With Man4
pdb|2IT6|A Chain A, Crystal Structure Of Dcsign-Crd With Man2
Length = 155
Score = 32.7 bits (73), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 14/52 (26%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
Query: 29 CPQHWVQYRDSCYRFVKSPLKTRNDAKLNCKSLDSDLANVNDADEHGFIMYQ 80
CP W ++ +CY F+ + + +D+ CK + + L + A+E F+ Q
Sbjct: 7 CPWEWTFFQGNCY-FMSNSQRNWHDSITACKEVGAQLVVIKSAEEQNFLQLQ 57
>pdb|3FFD|B Chain B, Structure Of Parathyroid Hormone-Related Protein Complexed
To A Neutralizing Monoclonal Antibody
Length = 220
Score = 32.7 bits (73), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 23/88 (26%), Positives = 37/88 (42%), Gaps = 11/88 (12%)
Query: 450 NRILTIPNVKVEDQGEYICRASNDRS-----ALESSVTISIQAEPNFTIPLT------DK 498
+R L+I N++ ED+ YIC + +++ EP T LT ++
Sbjct: 74 DRYLSISNIQPEDEAMYICGVGDTIKEQFVYVFGGGTKVTVLGEPKSTPTLTVFPPSSEE 133
Query: 499 HMDNQADLTWTCEAFGVPDVTYSWFRNG 526
+N+A L F VT +W NG
Sbjct: 134 LKENKATLVCLISNFSPSGVTVAWKANG 161
>pdb|3RJD|A Chain A, Crystal Structure Of Fc Ri And Its Implication To High
Affinity Immunoglobulin G Binding
Length = 262
Score = 32.7 bits (73), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 56/220 (25%), Positives = 85/220 (38%), Gaps = 33/220 (15%)
Query: 455 IPNVKVEDQGEYIC-RASNDRSALESSVTISIQAEPN---FTIPLTDKHMDNQADLTWTC 510
I + V D GEY C R + RS IQ E + + ++ + L C
Sbjct: 52 ITSASVNDSGEYRCQRGLSGRSD-------PIQLEIHRGWLLLQVSSRVFTEGEPLALRC 104
Query: 511 EAFG---VPDVTYSWFRNGELLNSETLPLEDQDRYFIQDNVLTIRYLNPERDPAMYQCRA 567
A+ V +V Y +RNG+ ++F ++ LTI N + Y C
Sbjct: 105 HAWKDKLVYNVLY--YRNGKAF-----------KFFHWNSNLTILKTNISHN-GTYHCSG 150
Query: 568 KNQLKTRYSSAQLRVLTLKPSFKKRPLESETYAG--EGGNVTIFCNPEAAPKPKFVWKKD 625
K RY+SA + V T+K F L + + EG VT+ C + + +
Sbjct: 151 MG--KHRYTSAGISV-TVKELFPAPVLNASVTSPLLEGNLVTLSCETKLLLQRPGLQLYF 207
Query: 626 GNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTATNVHG 665
+GS R + I R+DSG+Y C A G
Sbjct: 208 SFYMGSKTLRGRNTSSEYQILTARREDSGLYWCEAATEDG 247
>pdb|1SL5|A Chain A, Crystal Structure Of Dc-Sign Carbohydrate Recognition
Domain Complexed With Lnfp Iii (Dextra L504).
pdb|2IT5|A Chain A, Crystal Structure Of Dcsign-crd With Man6
Length = 139
Score = 32.7 bits (73), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 14/52 (26%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
Query: 29 CPQHWVQYRDSCYRFVKSPLKTRNDAKLNCKSLDSDLANVNDADEHGFIMYQ 80
CP W ++ +CY F+ + + +D+ CK + + L + A+E F+ Q
Sbjct: 7 CPWEWTFFQGNCY-FMSNSQRNWHDSITACKEVGAQLVVIKSAEEQNFLQLQ 57
>pdb|3CAF|A Chain A, Crystal Structure Of Hfgfr2 D2 Domain
pdb|3CU1|A Chain A, Crystal Structure Of 2:2:2 Fgfr2d2:fgf1:sos Complex
pdb|3CU1|C Chain C, Crystal Structure Of 2:2:2 Fgfr2d2:fgf1:sos Complex
pdb|3EUU|A Chain A, Crystal Structure Of The Fgfr2 D2 Domain
pdb|3EUU|B Chain B, Crystal Structure Of The Fgfr2 D2 Domain
Length = 100
Score = 32.7 bits (73), Expect = 1.0, Method: Composition-based stats.
Identities = 20/76 (26%), Positives = 37/76 (48%), Gaps = 10/76 (13%)
Query: 210 NDITLSCYAGGYPNPSYEWFK--EDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVE 267
N + C AGG P P+ W K +++ Q+ + + ++ ++L I +
Sbjct: 24 NTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGY--KVRNQHWSL------IMESVVPS 75
Query: 268 DRGSYHCKASNKFGSI 283
D+G+Y C N++GSI
Sbjct: 76 DKGNYTCVVENEYGSI 91
Score = 31.2 bits (69), Expect = 2.6, Method: Composition-based stats.
Identities = 18/81 (22%), Positives = 34/81 (41%), Gaps = 5/81 (6%)
Query: 410 APKAGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYF-----ENFNRILTIPNVKVEDQG 464
A A + V+ C A G P+P+ W + G + N + L + +V D+G
Sbjct: 19 AVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKG 78
Query: 465 EYICRASNDRSALESSVTISI 485
Y C N+ ++ + + +
Sbjct: 79 NYTCVVENEYGSINHTYHLDV 99
>pdb|2EE2|A Chain A, Solution Structures Of The Fn3 Domain Of Human Contactin 1
Length = 119
Score = 32.7 bits (73), Expect = 1.1, Method: Composition-based stats.
Identities = 24/100 (24%), Positives = 42/100 (42%), Gaps = 6/100 (6%)
Query: 879 NTPADKPYQAPSRXXXXXXXXXDLSISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETL 938
N+ D P +AP+ ++S+ WE + + + I Y K+ T
Sbjct: 12 NSAQDAPSEAPTEVGVKVLSSSEISVHWEHVLEKIVESYQIRYWAAHDKEEAANRVQVTS 71
Query: 939 KEYGNVGIAVVRIPSEFYYTEYEVKVQAINDVGPGPESEV 978
+EY R+ + T+Y ++V A N G GP S++
Sbjct: 72 QEYS------ARLENLLPDTQYFIEVGACNSAGCGPPSDM 105
>pdb|2OCW|A Chain A, Solution Structure Of Human Secretory Component
pdb|3CHN|S Chain S, Solution Structure Of Human Secretory Iga1
pdb|3CM9|S Chain S, Solution Structure Of Human Siga2
Length = 585
Score = 32.7 bits (73), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 34/151 (22%), Positives = 54/151 (35%), Gaps = 19/151 (12%)
Query: 344 RVFVSYDGALYFSA----LEQIDAGNYSCNVQSKVSDTGRNGPFFPLKVFPHSNFQQLKF 399
R+ + G L FS L DAG Y C + +N LK P ++ L+
Sbjct: 174 RLDIQGTGQLLFSVVINQLRLSDAGQYLCQAGDDSNSNKKNADLQVLKPEPELVYEDLRG 233
Query: 400 PNNFPKTF-PEAP---------KAGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYFENF 449
F PE +G+ + G P++ +P ++ F
Sbjct: 234 SVTFHCALGPEVANVAKFLCRQSSGENCDVVVNTLGKRAPAFEGRILLNPQDKDGSFS-- 291
Query: 450 NRILTIPNVKVEDQGEYICRASNDRSALESS 480
+ I ++ ED G Y+C A +D E S
Sbjct: 292 ---VVITGLRKEDAGRYLCGAHSDGQLQEGS 319
>pdb|1X5H|A Chain A, The Solution Structure Of The Third Fibronectin Type Iii
Domain Of Human Neogenin
Length = 132
Score = 32.7 bits (73), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 26/98 (26%), Positives = 39/98 (39%), Gaps = 3/98 (3%)
Query: 880 TPADKPYQAPSRXXXXXXXXXDLSISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETLK 939
T +D P AP + I W+P QN YKI +RK + +ETL
Sbjct: 13 TLSDVPSAAPQNLSLEVRNSKSIMIHWQPPAPATQNGQITGYKIRYRKASRKSDVTETLV 72
Query: 940 EYGNVGIAVVRIPSEFYYTEYEVKVQAINDVGPGPESE 977
+ + + TEY +V A+ G GP ++
Sbjct: 73 SGTQLSQLIEGLD---RGTEYNFRVAALTINGTGPATD 107
>pdb|3KNB|B Chain B, Crystal Structure Of The Titin C-Terminus In Complex With
Obscurin- Like 1
Length = 107
Score = 32.7 bits (73), Expect = 1.1, Method: Composition-based stats.
Identities = 22/80 (27%), Positives = 33/80 (41%), Gaps = 3/80 (3%)
Query: 603 GGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENG---NLLISPVSRDDSGIYSCT 659
G + C P P VW+K G + + R +G LL++ D+G+Y C
Sbjct: 28 GAEAELKCVVLGEPPPVVVWEKGGQQLAASERLSFPADGAEHGLLLTAALPTDAGVYVCR 87
Query: 660 ATNVHGMDESKGRLIVLHGP 679
A N G + + VL P
Sbjct: 88 ARNAAGEAYAAAAVTVLEPP 107
Score = 32.0 bits (71), Expect = 1.6, Method: Composition-based stats.
Identities = 22/91 (24%), Positives = 36/91 (39%), Gaps = 6/91 (6%)
Query: 403 FPKTFPEAPKAGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYF----ENFNRILTIPNV 458
FP+ P +G + L+CV G P P W + G L + + L +
Sbjct: 19 FPR--PVRVVSGAEAELKCVVLGEPPPVVVWEKGGQQLAASERLSFPADGAEHGLLLTAA 76
Query: 459 KVEDQGEYICRASNDRSALESSVTISIQAEP 489
D G Y+CRA N ++ +++ P
Sbjct: 77 LPTDAGVYVCRARNAAGEAYAAAAVTVLEPP 107
>pdb|1WVZ|A Chain A, Solution Structure Of The D2 Domain Of The Fibroblast
Growth Factor
Length = 104
Score = 32.7 bits (73), Expect = 1.1, Method: Composition-based stats.
Identities = 20/76 (26%), Positives = 37/76 (48%), Gaps = 10/76 (13%)
Query: 210 NDITLSCYAGGYPNPSYEWFK--EDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVE 267
N + C AGG P P+ W K +++ Q+ + + ++ ++L I +
Sbjct: 28 NTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGY--KVRNQHWSL------IMESVVPS 79
Query: 268 DRGSYHCKASNKFGSI 283
D+G+Y C N++GSI
Sbjct: 80 DKGNYTCVVENEYGSI 95
Score = 31.2 bits (69), Expect = 2.8, Method: Composition-based stats.
Identities = 18/81 (22%), Positives = 34/81 (41%), Gaps = 5/81 (6%)
Query: 410 APKAGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYF-----ENFNRILTIPNVKVEDQG 464
A A + V+ C A G P+P+ W + G + N + L + +V D+G
Sbjct: 23 AVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKG 82
Query: 465 EYICRASNDRSALESSVTISI 485
Y C N+ ++ + + +
Sbjct: 83 NYTCVVENEYGSINHTYHLDV 103
>pdb|3DAR|A Chain A, Crystal Structure Of D2 Domain From Human Fgfr2
pdb|3DAR|B Chain B, Crystal Structure Of D2 Domain From Human Fgfr2
Length = 105
Score = 32.7 bits (73), Expect = 1.1, Method: Composition-based stats.
Identities = 20/76 (26%), Positives = 37/76 (48%), Gaps = 10/76 (13%)
Query: 210 NDITLSCYAGGYPNPSYEWFK--EDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVE 267
N + C AGG P P+ W K +++ Q+ + + ++ ++L I +
Sbjct: 29 NTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGY--KVRNQHWSL------IMESVVPS 80
Query: 268 DRGSYHCKASNKFGSI 283
D+G+Y C N++GSI
Sbjct: 81 DKGNYTCVVENEYGSI 96
Score = 31.2 bits (69), Expect = 2.8, Method: Composition-based stats.
Identities = 18/81 (22%), Positives = 34/81 (41%), Gaps = 5/81 (6%)
Query: 410 APKAGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYF-----ENFNRILTIPNVKVEDQG 464
A A + V+ C A G P+P+ W + G + N + L + +V D+G
Sbjct: 24 AVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKG 83
Query: 465 EYICRASNDRSALESSVTISI 485
Y C N+ ++ + + +
Sbjct: 84 NYTCVVENEYGSINHTYHLDV 104
>pdb|2C5D|C Chain C, Structure Of A Minimal Gas6-Axl Complex
pdb|2C5D|D Chain D, Structure Of A Minimal Gas6-Axl Complex
Length = 195
Score = 32.3 bits (72), Expect = 1.2, Method: Composition-based stats.
Identities = 39/168 (23%), Positives = 63/168 (37%), Gaps = 28/168 (16%)
Query: 595 ESETYAGEGGNVT--------IFCNPEAAPKPKFV-WKKDGNII------------GSGG 633
E + G GN+T + C + +P V W +DG I+ G
Sbjct: 1 EESPFVGNPGNITGARGLTGTLRCQLQVQGEPPEVHWLRDGQILELADSTQTQVPLGEDE 60
Query: 634 RRKIFENGNLLISPVSRDDSGIYSCTATNVHGMDESKGRLIVLHGPSYYEQLPPKITIAA 693
+ L I+ + D+G Y C H S+ + L G Y+ + P T+AA
Sbjct: 61 QDDWIVVSQLRITSLQLSDTGQYQCLVFLGHQTFVSQPGYVGLEGLPYFLEEPEDRTVAA 120
Query: 694 HRNLQLRCSAH-TEELLDVAYIWTHNGVRI----GNMDLNELETPNIN 736
+ L C A E +D+ +W + V + G+ L P +N
Sbjct: 121 NTPFNLSCQAQGPPEPVDL--LWLQDAVPLATAPGHGPQRSLHVPGLN 166
>pdb|2H2R|A Chain A, Crystal Structure Of The Human Cd23 Lectin Domain, Apo
Form
pdb|2H2R|B Chain B, Crystal Structure Of The Human Cd23 Lectin Domain, Apo
Form
pdb|2H2T|B Chain B, Cd23 Lectin Domain, Calcium 2+-Bound
Length = 175
Score = 32.3 bits (72), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 13/49 (26%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
Query: 29 CPQHWVQYRDSCYRFVKSPLKTRNDAKLNCKSLDSDLANVNDADEHGFI 77
CP+ W+ ++ CY F K K A+ C ++ L +++ +E F+
Sbjct: 17 CPEKWINFQRKCYYFGKG-TKQWVHARYACDDMEGQLVSIHSPEEQDFL 64
>pdb|2XOT|A Chain A, Crystal Structure Of Neuronal Leucine Rich Repeat Protein
Amigo-1
pdb|2XOT|B Chain B, Crystal Structure Of Neuronal Leucine Rich Repeat Protein
Amigo-1
Length = 361
Score = 32.3 bits (72), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 31/69 (44%), Gaps = 4/69 (5%)
Query: 595 ESETYAGEGGNVTIFCNPEAAPKPKFVWKKDGN--IIGSGGRRKI-FENGNLLISPVSRD 651
ES A G +TI C+ + K VW N ++ G + NG+L V +
Sbjct: 253 ESAWEAHLGDTLTIRCDTKQQGMTK-VWVSPSNEQVLSQGSNGSVSVRNGDLFFKKVQVE 311
Query: 652 DSGIYSCTA 660
D G+Y+C A
Sbjct: 312 DGGVYTCYA 320
>pdb|3IKC|A Chain A, Structure Of S67-27 In Complex With
Kdo(2.8)-7-O-Methyl-Kdo
pdb|3IKC|C Chain C, Structure Of S67-27 In Complex With
Kdo(2.8)-7-O-Methyl-Kdo
Length = 218
Score = 32.3 bits (72), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 33/131 (25%), Positives = 55/131 (41%), Gaps = 12/131 (9%)
Query: 453 LTIPNVKVEDQGEYICRASNDRSALESSVTISIQ---AEPNFTI--PLTDKHMDNQADLT 507
LTI +V+ ED Y C+ SN+ + I+ A P +I P +++ A +
Sbjct: 79 LTISSVQAEDLAVYYCKQSNNLRTFGGGTKLEIKRADAAPTVSIFPPSSEQLTSGGASVV 138
Query: 508 WTCEAFGVPDVTYSWFRNGE-----LLNSETLPLEDQDRYFIQDNVLTIRYLNPERDPAM 562
F D+ W +G +LNS T + +D + + LT+ ER +
Sbjct: 139 CFLNNFYPKDINVKWKIDGSERQNGVLNSWT-DQDSKDSTYSMSSTLTLTKDEYERHNS- 196
Query: 563 YQCRAKNQLKT 573
Y C A ++ T
Sbjct: 197 YTCEATHKTST 207
Score = 31.6 bits (70), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 34/84 (40%), Gaps = 3/84 (3%)
Query: 546 DNVLTIRYLNPERDPAMYQCRAKNQLKTRYSSAQLRV--LTLKPSFKKRPLESETYAGEG 603
D LTI + E D A+Y C+ N L+T +L + P+ P SE G
Sbjct: 76 DFTLTISSVQAE-DLAVYYCKQSNNLRTFGGGTKLEIKRADAAPTVSIFPPSSEQLTSGG 134
Query: 604 GNVTIFCNPEAAPKPKFVWKKDGN 627
+V F N WK DG+
Sbjct: 135 ASVVCFLNNFYPKDINVKWKIDGS 158
>pdb|3IJY|A Chain A, Structure Of S67-27 In Complex With Kdo(2.8)kdo
pdb|3IJY|C Chain C, Structure Of S67-27 In Complex With Kdo(2.8)kdo
Length = 218
Score = 32.3 bits (72), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 33/131 (25%), Positives = 55/131 (41%), Gaps = 12/131 (9%)
Query: 453 LTIPNVKVEDQGEYICRASNDRSALESSVTISIQ---AEPNFTI--PLTDKHMDNQADLT 507
LTI +V+ ED Y C+ SN+ + I+ A P +I P +++ A +
Sbjct: 79 LTISSVQAEDLAVYYCKQSNNLRTFGGGTKLEIKRADAAPTVSIFPPSSEQLTSGGASVV 138
Query: 508 WTCEAFGVPDVTYSWFRNGE-----LLNSETLPLEDQDRYFIQDNVLTIRYLNPERDPAM 562
F D+ W +G +LNS T + +D + + LT+ ER +
Sbjct: 139 CFLNNFYPKDINVKWKIDGSERQNGVLNSWT-DQDSKDSTYSMSSTLTLTKDEYERHNS- 196
Query: 563 YQCRAKNQLKT 573
Y C A ++ T
Sbjct: 197 YTCEATHKTST 207
Score = 31.6 bits (70), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 34/84 (40%), Gaps = 3/84 (3%)
Query: 546 DNVLTIRYLNPERDPAMYQCRAKNQLKTRYSSAQLRV--LTLKPSFKKRPLESETYAGEG 603
D LTI + E D A+Y C+ N L+T +L + P+ P SE G
Sbjct: 76 DFTLTISSVQAE-DLAVYYCKQSNNLRTFGGGTKLEIKRADAAPTVSIFPPSSEQLTSGG 134
Query: 604 GNVTIFCNPEAAPKPKFVWKKDGN 627
+V F N WK DG+
Sbjct: 135 ASVVCFLNNFYPKDINVKWKIDGS 158
>pdb|1SL6|A Chain A, Crystal Structure Of A Fragment Of Dc-signr (containg The
Carbohydrate Recognition Domain And Two Repeats Of The
Neck) Complexed With Lewis-x.
pdb|1SL6|B Chain B, Crystal Structure Of A Fragment Of Dc-signr (containg The
Carbohydrate Recognition Domain And Two Repeats Of The
Neck) Complexed With Lewis-x.
pdb|1SL6|C Chain C, Crystal Structure Of A Fragment Of Dc-signr (containg The
Carbohydrate Recognition Domain And Two Repeats Of The
Neck) Complexed With Lewis-x.
pdb|1SL6|D Chain D, Crystal Structure Of A Fragment Of Dc-signr (containg The
Carbohydrate Recognition Domain And Two Repeats Of The
Neck) Complexed With Lewis-x.
pdb|1SL6|E Chain E, Crystal Structure Of A Fragment Of Dc-signr (containg The
Carbohydrate Recognition Domain And Two Repeats Of The
Neck) Complexed With Lewis-x.
pdb|1SL6|F Chain F, Crystal Structure Of A Fragment Of Dc-signr (containg The
Carbohydrate Recognition Domain And Two Repeats Of The
Neck) Complexed With Lewis-x.
pdb|1XAR|A Chain A, Crystal Structure Of A Fragment Of Dc-Signr (Containing
The Carbohydrate Recognition Domain And Two Repeats Of
The Neck).
pdb|1XAR|B Chain B, Crystal Structure Of A Fragment Of Dc-Signr (Containing
The Carbohydrate Recognition Domain And Two Repeats Of
The Neck)
Length = 184
Score = 32.3 bits (72), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 14/60 (23%), Positives = 30/60 (50%), Gaps = 1/60 (1%)
Query: 21 TIDELELRCPQHWVQYRDSCYRFVKSPLKTRNDAKLNCKSLDSDLANVNDADEHGFIMYQ 80
+ L CP+ W ++ +CY F+ + + +D+ C+ + + L + A+E F+ Q
Sbjct: 45 AFERLCRHCPKDWTFFQGNCY-FMSNSQRNWHDSVTACQEVRAQLVVIKTAEEQNFLQLQ 103
>pdb|3IJH|A Chain A, Structure Of S67-27 In Complex With Ko
pdb|3IJH|C Chain C, Structure Of S67-27 In Complex With Ko
pdb|3IJS|A Chain A, Structure Of S67-27 In Complex With Tsbp
pdb|3IJS|C Chain C, Structure Of S67-27 In Complex With Tsbp
Length = 219
Score = 32.3 bits (72), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 33/131 (25%), Positives = 55/131 (41%), Gaps = 12/131 (9%)
Query: 453 LTIPNVKVEDQGEYICRASNDRSALESSVTISIQ---AEPNFTI--PLTDKHMDNQADLT 507
LTI +V+ ED Y C+ SN+ + I+ A P +I P +++ A +
Sbjct: 79 LTISSVQAEDLAVYYCKQSNNLRTFGGGTKLEIKRADAAPTVSIFPPSSEQLTSGGASVV 138
Query: 508 WTCEAFGVPDVTYSWFRNGE-----LLNSETLPLEDQDRYFIQDNVLTIRYLNPERDPAM 562
F D+ W +G +LNS T + +D + + LT+ ER +
Sbjct: 139 CFLNNFYPKDINVKWKIDGSERQNGVLNSWT-DQDSKDSTYSMSSTLTLTKDEYERHNS- 196
Query: 563 YQCRAKNQLKT 573
Y C A ++ T
Sbjct: 197 YTCEATHKTST 207
Score = 31.6 bits (70), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 34/84 (40%), Gaps = 3/84 (3%)
Query: 546 DNVLTIRYLNPERDPAMYQCRAKNQLKTRYSSAQLRV--LTLKPSFKKRPLESETYAGEG 603
D LTI + E D A+Y C+ N L+T +L + P+ P SE G
Sbjct: 76 DFTLTISSVQAE-DLAVYYCKQSNNLRTFGGGTKLEIKRADAAPTVSIFPPSSEQLTSGG 134
Query: 604 GNVTIFCNPEAAPKPKFVWKKDGN 627
+V F N WK DG+
Sbjct: 135 ASVVCFLNNFYPKDINVKWKIDGS 158
>pdb|2CKN|A Chain A, Nmr Structure Of The First Ig Module Of Mouse Fgfr1
Length = 95
Score = 32.3 bits (72), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 35/73 (47%), Gaps = 12/73 (16%)
Query: 697 LQLRCSAHTEELLDVAYI-WTHNGVRIGNMDLNELETPNINIDGGLLEITNASFADAGEY 755
LQLRC DV I W +GV++ +E+ I G +E+ ++ AD+G Y
Sbjct: 27 LQLRCRLRD----DVQSINWLRDGVQL-------VESNRTRITGEEVEVRDSIPADSGLY 75
Query: 756 ECVVKSTVGKIST 768
CV S G +T
Sbjct: 76 ACVTSSPSGSDTT 88
>pdb|3MJ9|L Chain L, Crystal Structure Of Jaml In Complex With The Stimulatory
Antibody Hl4e10
pdb|3MJ8|L Chain L, Crystal Structure Of Hl4e10 Fab, A Hamster Ab Stimulatory
For Gammadelta T Cells
pdb|3MJ8|A Chain A, Crystal Structure Of Hl4e10 Fab, A Hamster Ab Stimulatory
For Gammadelta T Cells
Length = 213
Score = 32.0 bits (71), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 30/130 (23%), Positives = 55/130 (42%), Gaps = 13/130 (10%)
Query: 435 RRGSPLPRNAYFENFNRI--LTIPNVKVEDQGEYICRA---SNDRSALESSVTISIQAEP 489
RR S +P + N + LTI + D+ +Y C++ +N S +++ +P
Sbjct: 52 RRPSGIPDHFSGSNSGNMATLTISKAQAGDEADYYCQSWDGTNSAWVFGSGTKVTVLGQP 111
Query: 490 N----FTI--PLTDKHMDNQADLTWTCEAFGVPDVTYSWFRNGELLNS--ETLPLEDQDR 541
N T+ P +++ NQA L F DV +W +G + +T D
Sbjct: 112 NAAPSVTLFPPSSEELKTNQATLVCMINGFYPADVAVTWEADGTPITQGVKTTQPSKSDS 171
Query: 542 YFIQDNVLTI 551
++ + LT+
Sbjct: 172 KYMATSYLTM 181
>pdb|1X5F|A Chain A, The Solution Structure Of The First Fibronectin Type Iii
Domain Of Human Neogenin
Length = 120
Score = 32.0 bits (71), Expect = 1.6, Method: Composition-based stats.
Identities = 18/52 (34%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
Query: 834 EVDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPSPQYNTPADKP 885
E + G + +I+N L+P + Y F+V+A N+ G GE S+P P P
Sbjct: 67 ENTSHPGEMQVTIQN-LMPATVYIFRVMAQNKHGSGESSAPLRVETQPESGP 117
>pdb|1XPH|A Chain A, Structure Of Dc-Signr And A Portion Of Repeat Domain 8
Length = 150
Score = 32.0 bits (71), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 14/60 (23%), Positives = 30/60 (50%), Gaps = 1/60 (1%)
Query: 21 TIDELELRCPQHWVQYRDSCYRFVKSPLKTRNDAKLNCKSLDSDLANVNDADEHGFIMYQ 80
+ L CP+ W ++ +CY F+ + + +D+ C+ + + L + A+E F+ Q
Sbjct: 11 AFERLCRHCPKDWTFFQGNCY-FMSNSQRNWHDSVTACQEVRAQLVVIKTAEEQNFLQLQ 69
>pdb|3MJG|X Chain X, The Structure Of A Platelet Derived Growth Factor Receptor
Complex
pdb|3MJG|Y Chain Y, The Structure Of A Platelet Derived Growth Factor Receptor
Complex
Length = 289
Score = 32.0 bits (71), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 32/69 (46%), Gaps = 9/69 (13%)
Query: 412 KAGDKVRLECVAFGYPVPSYNWT--RRGSPL---PRNAYFENF----NRILTIPNVKVED 462
+ G+ + L C+ G V ++ WT R+ S P + + IL IP+ ++ED
Sbjct: 194 RQGENITLMCIVIGNEVVNFEWTYPRKESGRLVEPVTDFLLDMPYHIRSILHIPSAELED 253
Query: 463 QGEYICRAS 471
G Y C +
Sbjct: 254 SGTYTCNVT 262
>pdb|1T8C|A Chain A, Structure Of The C-Type Lectin Domain Of Cd23
pdb|1T8D|A Chain A, Structure Of The C-Type Lectin Domain Of Cd23
pdb|4EZM|G Chain G, Crystal Structure Of The Human Ige-Fc(Epsilon)3-4 Bound
To Its B Cell Receptor Dercd23
pdb|4EZM|H Chain H, Crystal Structure Of The Human Ige-Fc(Epsilon)3-4 Bound
To Its B Cell Receptor Dercd23
pdb|4EZM|I Chain I, Crystal Structure Of The Human Ige-Fc(Epsilon)3-4 Bound
To Its B Cell Receptor Dercd23
pdb|4EZM|J Chain J, Crystal Structure Of The Human Ige-Fc(Epsilon)3-4 Bound
To Its B Cell Receptor Dercd23
pdb|4EZM|K Chain K, Crystal Structure Of The Human Ige-Fc(Epsilon)3-4 Bound
To Its B Cell Receptor Dercd23
pdb|4EZM|L Chain L, Crystal Structure Of The Human Ige-Fc(Epsilon)3-4 Bound
To Its B Cell Receptor Dercd23
Length = 143
Score = 32.0 bits (71), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 13/49 (26%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
Query: 29 CPQHWVQYRDSCYRFVKSPLKTRNDAKLNCKSLDSDLANVNDADEHGFI 77
CP+ W+ ++ CY F K K A+ C ++ L +++ +E F+
Sbjct: 8 CPEKWINFQRKCYYFGKG-TKQWVHARYACDDMEGQLVSIHSPEEQDFL 55
>pdb|3ZYI|A Chain A, Netring2 In Complex With Ngl2
Length = 452
Score = 32.0 bits (71), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 25/54 (46%), Gaps = 3/54 (5%)
Query: 625 DGNIIGSGGRR---KIFENGNLLISPVSRDDSGIYSCTATNVHGMDESKGRLIV 675
+G ++ R + +G L S V D+G+Y+C TNV G + L V
Sbjct: 388 NGTVLSHASRHPRISVLNDGTLNFSHVLLSDTGVYTCMVTNVAGNSNASAYLNV 441
>pdb|1WMY|A Chain A, Crystal Structure Of C-Type Lectin Cel-I From Cucumaria
Echinata
pdb|1WMY|B Chain B, Crystal Structure Of C-Type Lectin Cel-I From Cucumaria
Echinata
pdb|1WMZ|A Chain A, Crystal Structure Of C-Type Lectin Cel-I Complexed With
N- Acetyl-D-Galactosamine
pdb|1WMZ|B Chain B, Crystal Structure Of C-Type Lectin Cel-I Complexed With
N- Acetyl-D-Galactosamine
pdb|1WMZ|C Chain C, Crystal Structure Of C-Type Lectin Cel-I Complexed With
N- Acetyl-D-Galactosamine
pdb|1WMZ|D Chain D, Crystal Structure Of C-Type Lectin Cel-I Complexed With
N- Acetyl-D-Galactosamine
Length = 140
Score = 32.0 bits (71), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 27/58 (46%), Gaps = 8/58 (13%)
Query: 28 RCPQHWVQYRDSCYRFVKSPLKTRNDAKLNCKS-------LDSDLANVNDADEHGFIM 78
+CP W D CYRF + L T +A C S + SDL +V+ A E ++
Sbjct: 2 QCPTDWEAEGDHCYRFFNT-LTTWENAHHECVSYSCSTLNVRSDLVSVHSAAEQAYVF 58
>pdb|3UBU|A Chain A, Crystal Structure Of Agkisacucetin, A Gpib-Binding Snaclec
(Snake C- Type Lectin) That Inhibits Platelet
Length = 131
Score = 32.0 bits (71), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 35/131 (26%), Positives = 53/131 (40%), Gaps = 18/131 (13%)
Query: 26 ELRCPQHWVQYRDSCYRFVKSPLKTRNDAKLNC--KSLDSDLANVNDADEHGFIMYQLFW 83
++ C W Y SCYR K LKT +DA+ C + L ++ A E F+ QL
Sbjct: 1 DVDCLPGWSAYDQSCYRVFK-LLKTWDDAEKFCTERPKGGHLVSIESAGERDFVA-QLVS 58
Query: 84 QDPQRRKWYFGGTQQSPNLWVNEDGTNLNELDAAFLPEPADNVQRDYLAYSFSQSLKRWG 143
++ +Q+ N+W+ G + E D Y +S QS K +
Sbjct: 59 EN-----------KQTDNVWL---GLKIQSKGQQCSTEWTDGSSVSYENFSEYQSKKCFV 104
Query: 144 FERVTGMEPLL 154
E+ TG L
Sbjct: 105 LEKNTGFRTWL 115
>pdb|3BX4|B Chain B, Crystal Structure Of The Snake Venom Toxin Aggretin
pdb|3BX4|D Chain D, Crystal Structure Of The Snake Venom Toxin Aggretin
Length = 146
Score = 32.0 bits (71), Expect = 1.9, Method: Composition-based stats.
Identities = 24/73 (32%), Positives = 32/73 (43%), Gaps = 4/73 (5%)
Query: 9 FIFVSFHS-VFSQTIDELELRCPQHWVQYRDSCYRFVKSPLKTRNDAKLNCK--SLDSDL 65
FIFVSF V ++ CP W Y CY+ P K DA+ CK S L
Sbjct: 4 FIFVSFGLLVVFLSLSGTGADCPSGWSSYEGHCYKPFNEP-KNWADAERFCKLQPKHSHL 62
Query: 66 ANVNDADEHGFIM 78
+ A+E F++
Sbjct: 63 VSFQSAEEADFVV 75
>pdb|1ADQ|L Chain L, Crystal Structure Of A Human Igm Rheumatoid Factor Fab In
Complex With Its Autoantigen Igg Fc
Length = 213
Score = 31.6 bits (70), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 30/135 (22%), Positives = 60/135 (44%), Gaps = 17/135 (12%)
Query: 453 LTIPNVKVEDQGEYICR---ASNDRSALESSVTISI----QAEPNFTI--PLTDKHMDNQ 503
LTI V+ D+ +Y C+ +S+D + +++ +A P+ T+ P +++ N+
Sbjct: 71 LTISRVEAGDEADYYCQVWDSSSDHAVFGGGTKLTVLGQPKAAPSVTLFPPSSEELQANK 130
Query: 504 ADLTWTCEAFGVPDVTYSWFRNGELLNS---ETLPLEDQDRYFIQDNVLTIRYLNPE--R 558
A L F VT +W +G + + T P + + + + L+ L PE +
Sbjct: 131 ATLVCLISDFYPGAVTVAWKADGSPVKAGVETTTPSKQSNNKYAASSYLS---LTPEQWK 187
Query: 559 DPAMYQCRAKNQLKT 573
Y C+ ++ T
Sbjct: 188 SHKSYSCQVTHEGST 202
>pdb|2QHR|L Chain L, Crystal Structure Of The 13f6-1-2 Fab Fragment Bound To
Its Ebola Virus Glycoprotein Peptide Epitope
Length = 218
Score = 31.6 bits (70), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 22/88 (25%), Positives = 39/88 (44%), Gaps = 11/88 (12%)
Query: 450 NRILTIPNVKVEDQGEYICRASND---------RSALESSVTISIQAEPNFTI--PLTDK 498
+R L+I N++ ED+ YIC + + +V ++ P T+ P +++
Sbjct: 74 DRYLSISNIQPEDEAIYICGVGDTIKEQFVYVFGGGTKVTVLGQPKSTPTLTVFPPSSEE 133
Query: 499 HMDNQADLTWTCEAFGVPDVTYSWFRNG 526
+N+A L F VT +W NG
Sbjct: 134 LKENKATLVCLISNFSPSGVTVAWKANG 161
>pdb|3S96|B Chain B, Crystal Structure Of 3b5h10
pdb|3S96|D Chain D, Crystal Structure Of 3b5h10
Length = 218
Score = 31.6 bits (70), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 22/88 (25%), Positives = 39/88 (44%), Gaps = 11/88 (12%)
Query: 450 NRILTIPNVKVEDQGEYICRASND---------RSALESSVTISIQAEPNFTI--PLTDK 498
+R L+I N++ ED+ YIC + + +V ++ P T+ P +++
Sbjct: 74 DRYLSISNIQPEDEAIYICGVGDTIKEQFVYVFGGGTKVTVLGQPKSTPTLTVFPPSSEE 133
Query: 499 HMDNQADLTWTCEAFGVPDVTYSWFRNG 526
+N+A L F VT +W NG
Sbjct: 134 LKENKATLVCLISNFSPSGVTVAWKANG 161
>pdb|1T6W|A Chain A, Rational Design Of A Calcium-Binding Adhesion Protein Nmr,
20 Structures
Length = 99
Score = 31.6 bits (70), Expect = 2.1, Method: Composition-based stats.
Identities = 14/33 (42%), Positives = 21/33 (63%)
Query: 633 GRRKIFENGNLLISPVSRDDSGIYSCTATNVHG 665
G +I NG+L I ++RDDSG Y+ T + +G
Sbjct: 53 GAFEILANGDLKIKNLTRDDSGTYNVTVYSTNG 85
>pdb|3ZYO|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
And Immunoglobulin Domain Of Netrin-G Ligand-3
Length = 411
Score = 31.6 bits (70), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 35/77 (45%), Gaps = 6/77 (7%)
Query: 414 GDKVRLECVAFGYPVPSYNW-TRRGSPLPRNAYFENFNRI----LTIPNVKVEDQGEYIC 468
G L+C G + S NW T G+ + +Y + + L NV V+D G+Y C
Sbjct: 327 GMAAELKCRT-GTSMTSVNWLTPNGTLMTHGSYRVRISVLHDGTLNFTNVTVQDTGQYTC 385
Query: 469 RASNDRSALESSVTISI 485
+N +S T+++
Sbjct: 386 MVTNSAGNTTASATLNV 402
Score = 29.6 bits (65), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 11/35 (31%), Positives = 18/35 (51%)
Query: 737 IDGGLLEITNASFADAGEYECVVKSTVGKISTKTT 771
+ G L TN + D G+Y C+V ++ G + T
Sbjct: 365 LHDGTLNFTNVTVQDTGQYTCMVTNSAGNTTASAT 399
>pdb|1FJ1|B Chain B, Lyme Disease Antigen Ospa In Complex With Neutralizing
Antibody Fab La-2
pdb|1FJ1|D Chain D, Lyme Disease Antigen Ospa In Complex With Neutralizing
Antibody Fab La-2
Length = 213
Score = 31.6 bits (70), Expect = 2.2, Method: Composition-based stats.
Identities = 43/160 (26%), Positives = 62/160 (38%), Gaps = 33/160 (20%)
Query: 408 PEAPKAGDKVRLECVAFGYPVPSYN--WTRR--GSPLPRNA----------YFENF---- 449
PE K G+ V++ C A GY Y+ W ++ G L R Y ++F
Sbjct: 9 PELKKPGETVKISCKASGYTFTDYSMYWVKQAPGKGLKRMGWINTETGEPTYADDFKGRF 68
Query: 450 ---------NRILTIPNVKVEDQGEYICRASNDRSALESSVTI-SIQAEPNFTIPLTDKH 499
L I N+K ED Y C D +SVT+ S + P PL
Sbjct: 69 ALSLDTSASTAYLHISNLKNEDTATYFCARGLDSWGQGTSVTVSSAKTTPPSVYPLAPGC 128
Query: 500 MDNQ-ADLTWTC--EAFGVPDVTYSWFRNGELLNS-ETLP 535
D + +T C + + VT +W +G L +S T P
Sbjct: 129 GDTTGSSVTLGCLVKGYFPESVTVTW-NSGSLSSSVHTFP 167
>pdb|1K9J|A Chain A, Complex Of Dc-signr And Glcnac2man3
pdb|1K9J|B Chain B, Complex Of Dc-signr And Glcnac2man3
Length = 139
Score = 31.6 bits (70), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 14/58 (24%), Positives = 30/58 (51%), Gaps = 1/58 (1%)
Query: 23 DELELRCPQHWVQYRDSCYRFVKSPLKTRNDAKLNCKSLDSDLANVNDADEHGFIMYQ 80
+ L CP+ W ++ +CY F+ + + +D+ C+ + + L + A+E F+ Q
Sbjct: 2 ERLCRHCPKDWTFFQGNCY-FMSNSQRNWHDSVTACQEVRAQLVVIKTAEEQNFLQLQ 58
>pdb|4HWU|A Chain A, Crystal Structure Of The Ig-C2 Type 1 Domain From Mouse
Fibroblast Growth Factor Receptor 2 (Fgfr2)
[nysgrc-005912]
pdb|4HWU|B Chain B, Crystal Structure Of The Ig-C2 Type 1 Domain From Mouse
Fibroblast Growth Factor Receptor 2 (Fgfr2)
[nysgrc-005912]
Length = 95
Score = 31.6 bits (70), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 36/81 (44%), Gaps = 17/81 (20%)
Query: 686 PPKITIAAHRNLQLRCSAHTEELLDVAYI-WTHNGVRIGNMDLNELETPN--INIDGGLL 742
P +A +L+L+C L D A I WT +GV +G PN + G L
Sbjct: 8 PEAYVVAPGESLELQCM-----LKDAAVISWTKDGVHLG---------PNNRTVLIGEYL 53
Query: 743 EITNASFADAGEYECVVKSTV 763
+I A+ D+G Y C TV
Sbjct: 54 QIKGATPRDSGLYACTAARTV 74
>pdb|1A6P|A Chain A, Engineering Of A Misfolded Form Of Cd2
pdb|1A6P|B Chain B, Engineering Of A Misfolded Form Of Cd2
Length = 94
Score = 31.6 bits (70), Expect = 2.2, Method: Composition-based stats.
Identities = 14/33 (42%), Positives = 21/33 (63%)
Query: 633 GRRKIFENGNLLISPVSRDDSGIYSCTATNVHG 665
G +I NG+L I ++RDDSG Y+ T + +G
Sbjct: 48 GAFEILANGDLKIKNLTRDDSGTYNVTVYSTNG 80
>pdb|1CDC|A Chain A, Cd2, N-Terminal Domain (1-99), Truncated Form
pdb|1CDC|B Chain B, Cd2, N-Terminal Domain (1-99), Truncated Form
Length = 99
Score = 31.6 bits (70), Expect = 2.2, Method: Composition-based stats.
Identities = 14/33 (42%), Positives = 21/33 (63%)
Query: 633 GRRKIFENGNLLISPVSRDDSGIYSCTATNVHG 665
G +I NG+L I ++RDDSG Y+ T + +G
Sbjct: 53 GAFEILANGDLKIKNLTRDDSGTYNVTVYSTNG 85
>pdb|1A64|A Chain A, Engineering A Misfolded Form Of Rat Cd2
pdb|1A64|B Chain B, Engineering A Misfolded Form Of Rat Cd2
pdb|1A7B|A Chain A, Engineering A Misfolded Form Of Cd2
pdb|1A7B|B Chain B, Engineering A Misfolded Form Of Cd2
pdb|1A7B|C Chain C, Engineering A Misfolded Form Of Cd2
pdb|1A7B|D Chain D, Engineering A Misfolded Form Of Cd2
Length = 97
Score = 31.6 bits (70), Expect = 2.4, Method: Composition-based stats.
Identities = 14/33 (42%), Positives = 21/33 (63%)
Query: 633 GRRKIFENGNLLISPVSRDDSGIYSCTATNVHG 665
G +I NG+L I ++RDDSG Y+ T + +G
Sbjct: 51 GAFEILANGDLKIKNLTRDDSGTYNVTVYSTNG 83
>pdb|2CR3|A Chain A, Solution Structure Of The First Ig-Like Domain Of Human
Fibroblast Growth Factor Receptor 1
Length = 99
Score = 31.6 bits (70), Expect = 2.4, Method: Composition-based stats.
Identities = 24/73 (32%), Positives = 34/73 (46%), Gaps = 12/73 (16%)
Query: 697 LQLRCSAHTEELLDVAYI-WTHNGVRIGNMDLNELETPNINIDGGLLEITNASFADAGEY 755
LQLRC DV I W +GV++ E+ I G +E+ ++ AD+G Y
Sbjct: 21 LQLRCRLRD----DVQSINWLRDGVQLA-------ESNRTRITGEEVEVQDSVPADSGLY 69
Query: 756 ECVVKSTVGKIST 768
CV S G +T
Sbjct: 70 ACVTSSPSGSDTT 82
>pdb|2Y7Q|A Chain A, The High-Affinity Complex Between Ige And Its Receptor Fc
Epsilon Ri
Length = 188
Score = 31.6 bits (70), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 44/180 (24%), Positives = 71/180 (39%), Gaps = 24/180 (13%)
Query: 414 GDKVRLECVAFGY-PVPSYNWTRRGSPLPRNAYFENFNRILTIPNVKVEDQGEYICRASN 472
G+ V L C + V S W GS E N L I N K ED GEY C+ +
Sbjct: 22 GENVTLTCNGNNFFEVSSTKWFHNGS------LSEETNSSLNIVNAKFEDSGEYKCQ--H 73
Query: 473 DRSALESSVTISIQAEPNFTIPLTDKHMDNQADLTWTCEAFGVPDV-TYSWFRNGELLNS 531
+ A V + + ++ + M+ Q L C + DV ++++GE L
Sbjct: 74 QQVAESEPVYLEVFSDWLLLQASAEVVMEGQP-LFLRCHGWRNWDVYKVIYYKDGEAL-- 130
Query: 532 ETLPLEDQDRYFIQDNVLTIRYLNPERDPAMYQCRAKNQLKTRYSSAQLRVLTLKPSFKK 591
+Y+ +++ ++I E D Y C K + Y S L + +K +K
Sbjct: 131 ---------KYWYENHAISITNAAAE-DSGTYYCTGK-VWQLDYESEPLNITVIKAPREK 179
Score = 29.6 bits (65), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 33/73 (45%), Gaps = 16/73 (21%)
Query: 686 PPKITIAAHRNLQLRCSAHTEELLDVAYI-WTHNGVRIGNMDLNELETPNINIDGGLLEI 744
PP I N+ L C+ + +V+ W HNG L+E ++NI
Sbjct: 14 PPWNRIFKGENVTLTCNGNN--FFEVSSTKWFHNG------SLSEETNSSLNI------- 58
Query: 745 TNASFADAGEYEC 757
NA F D+GEY+C
Sbjct: 59 VNAKFEDSGEYKC 71
>pdb|1BJ3|A Chain A, Crystal Structure Of Coagulation Factor Ix-Binding Protein
(Ix-Bp) From Venom Of Habu Snake With A Heterodimer Of
C-Type Lectin Domains
pdb|1J34|A Chain A, Crystal Structure Of Mg(Ii)-And Ca(Ii)-Bound Gla Domain Of
Factor Ix Complexed With Binding Protein
pdb|1J35|A Chain A, Crystal Structure Of Ca(Ii)-Bound Gla Domain Of Factor Ix
Complexed With Binding Protein
pdb|1X2T|A Chain A, Crystal Structure Of Habu Ix-Bp At Ph 6.5
pdb|1X2T|C Chain C, Crystal Structure Of Habu Ix-Bp At Ph 6.5
pdb|1X2W|A Chain A, Crystal Structure Of Apo-Habu Ix-Bp At Ph 4.6
Length = 129
Score = 31.6 bits (70), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 35/142 (24%), Positives = 56/142 (39%), Gaps = 25/142 (17%)
Query: 29 CPQHWVQYRDSCYRFVKSPLKTRNDAKLNC--KSLDSDLANVNDADEHGFIMYQLFWQDP 86
CP W Y CY+ K KT +DA+ C ++ L ++ A E F+ QL ++
Sbjct: 2 CPSGWSSYEGHCYKPFK-LYKTWDDAERFCTEQAKGGHLVSIESAGEADFVA-QLVTENI 59
Query: 87 QRRKWYFGGTQQSPNLWVNEDGTNLNELDAAFLPEPADNVQRDYLAYSFSQSLKRWGFER 146
Q K Y +W+ G + + E +D Y + ++S G E+
Sbjct: 60 QNTKSY---------VWI---GLRVQGKEKQCSSEWSDGSSVSYENWIEAESKTCLGLEK 107
Query: 147 VTGMEPLL---------FICEA 159
TG + F+CEA
Sbjct: 108 ETGFRKWVNIYCGQQNPFVCEA 129
>pdb|1HNG|A Chain A, Crystal Structure At 2.8 Angstroms Resolution Of A Soluble
Form Of The Cell Adhesion Molecule Cd2
pdb|1HNG|B Chain B, Crystal Structure At 2.8 Angstroms Resolution Of A Soluble
Form Of The Cell Adhesion Molecule Cd2
Length = 176
Score = 31.2 bits (69), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 21/33 (63%)
Query: 633 GRRKIFENGNLLISPVSRDDSGIYSCTATNVHG 665
G +I NG+L I ++RDDSG Y+ T + +G
Sbjct: 53 GAFEILANGDLKIKNLTRDDSGTYNVTVYSTNG 85
>pdb|1WIO|A Chain A, Structure Of T-Cell Surface Glycoprotein Cd4, Tetragonal
Crystal Form
pdb|1WIO|B Chain B, Structure Of T-Cell Surface Glycoprotein Cd4, Tetragonal
Crystal Form
pdb|1WIP|A Chain A, Structure Of T-Cell Surface Glycoprotein Cd4, Monoclinic
Crystal Form
pdb|1WIP|B Chain B, Structure Of T-Cell Surface Glycoprotein Cd4, Monoclinic
Crystal Form
pdb|1WIQ|A Chain A, Structure Of T-Cell Surface Glycoprotein Cd4, Trigonal
Crystal Form
pdb|1WIQ|B Chain B, Structure Of T-Cell Surface Glycoprotein Cd4, Trigonal
Crystal Form
Length = 363
Score = 31.2 bits (69), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 30/122 (24%), Positives = 46/122 (37%), Gaps = 29/122 (23%)
Query: 412 KAGDKVRLECVAFGYPVPSYNWTR---------RGSPL------------PRNAYFENFN 450
K GD V L C A ++W +GS L R + ++ N
Sbjct: 7 KKGDTVELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQGN 66
Query: 451 RILTIPNVKVEDQGEYICRASNDRSALESSVTISIQAEPNFTIPLTDKHMDNQADLTWTC 510
L I N+K+ED YIC + + ++ V + A +D H+ LT T
Sbjct: 67 FPLIIKNLKIEDSDTYICEVEDQKEEVQLLV-FGLTAN-------SDTHLLQGQSLTLTL 118
Query: 511 EA 512
E+
Sbjct: 119 ES 120
>pdb|3RBS|A Chain A, Crystal Structure Of The Myomesin Domains 10 And 11
Length = 207
Score = 31.2 bits (69), Expect = 2.9, Method: Composition-based stats.
Identities = 20/56 (35%), Positives = 31/56 (55%), Gaps = 3/56 (5%)
Query: 621 VWKKDGNIIGSGGRRKIFENG--NLLISPVSRDDSGIYSCTATNVHGMDESKGRLI 674
VW KD I S + F++G LLI+ S+ D+GIY + G D+S+ +L+
Sbjct: 150 VWYKDEREI-SVDEKHDFKDGICTLLITEFSKKDAGIYEVILKDDRGKDKSRLKLV 204
>pdb|1G0Y|R Chain R, Il-1 Receptor Type 1 Complexed With Antagonist Peptide
Af10847
Length = 312
Score = 31.2 bits (69), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 55/249 (22%), Positives = 95/249 (38%), Gaps = 40/249 (16%)
Query: 459 KVEDQGEYICRASNDRSALESSVTIS-IQAEPNFTI---PLTDKHMDNQADLTWTCEAFG 514
KVED G Y C N L ++ ++ EPN + + + D C
Sbjct: 67 KVEDSGHYYCVVRNSSYCLRIKISAKFVENEPNLCYNAQAIFKQKLPVAGDGGLVC---- 122
Query: 515 VPDVTYSWFRNGELLN----SETLPLEDQDRYF--IQDNVLTIRYLNPERDPAMYQCRAK 568
P + + N EL + PL + +F ++D ++ + E+ Y C A
Sbjct: 123 -PYMEFFKNENNELPKLQWYKDCKPLLLDNIHFSGVKDRLIVMNV--AEKHRGNYTCHAS 179
Query: 569 -NQLKTRYSSAQ-LRVLTLKPSFKKRPL----ESETYAGE-GGNVTIFCNPEAAPKPKFV 621
L +Y + + +TL+ + RP+ +ET + G + + CN
Sbjct: 180 YTYLGKQYPITRVIEFITLEENKPTRPVIVSPANETMEVDLGSQIQLICNVTGQLSDIAY 239
Query: 622 WKKDGNIIGS---------------GGRRKIFENGNLLISPV-SRDDSGIYSCTATNVHG 665
WK +G++I +R+ L IS + SR ++C A N HG
Sbjct: 240 WKWNGSVIDEDDPVLGEDYYSVENPANKRRSTLITVLNISEIESRFYKHPFTCFAKNTHG 299
Query: 666 MDESKGRLI 674
+D + +LI
Sbjct: 300 IDAAYIQLI 308
Score = 29.6 bits (65), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 30/131 (22%), Positives = 53/131 (40%), Gaps = 14/131 (10%)
Query: 428 VPSYNWTRRGSPLPR-NAYFENFNRILTIPNVKVEDQGEYICRASNDRSALESSVTISIQ 486
+P W + PL N +F L + NV + +G Y C AS + +T I+
Sbjct: 135 LPKLQWYKDCKPLLLDNIHFSGVKDRLIVMNVAEKHRGNYTCHASYTYLGKQYPITRVIE 194
Query: 487 ---------AEPNFTIPLTDK-HMDNQADLTWTCEAFG-VPDVTYSWFRNGELLNSETLP 535
P P + +D + + C G + D+ Y W NG +++ E P
Sbjct: 195 FITLEENKPTRPVIVSPANETMEVDLGSQIQLICNVTGQLSDIAY-WKWNGSVID-EDDP 252
Query: 536 LEDQDRYFIQD 546
+ +D Y +++
Sbjct: 253 VLGEDYYSVEN 263
>pdb|1MPU|A Chain A, Crystal Structure Of The Free Human Nkg2d Immunoreceptor
Length = 138
Score = 31.2 bits (69), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 12/49 (24%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
Query: 29 CPQHWVQYRDSCYRFVKSPLKTRNDAKLNCKSLDSDLANVNDADEHGFI 77
CP++W+ Y+++CY+F K +++ +C S ++ L V ++ +
Sbjct: 21 CPKNWICYKNNCYQFFDES-KNWYESQASCMSQNASLLKVYSKEDQDLL 68
>pdb|1ITB|B Chain B, Type-1 Interleukin-1 Receptor Complexed With Interleukin-1
Beta
Length = 315
Score = 31.2 bits (69), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 55/249 (22%), Positives = 95/249 (38%), Gaps = 40/249 (16%)
Query: 459 KVEDQGEYICRASNDRSALESSVTIS-IQAEPNFTI---PLTDKHMDNQADLTWTCEAFG 514
KVED G Y C N L ++ ++ EPN + + + D C
Sbjct: 70 KVEDSGHYYCVVRNSSYCLRIKISAKFVENEPNLCYNAQAIFKQKLPVAGDGGLVC---- 125
Query: 515 VPDVTYSWFRNGELLN----SETLPLEDQDRYF--IQDNVLTIRYLNPERDPAMYQCRAK 568
P + + N EL + PL + +F ++D ++ + E+ Y C A
Sbjct: 126 -PYMEFFKNENNELPKLQWYKDCKPLLLDNIHFSGVKDRLIVMNV--AEKHRGNYTCHAS 182
Query: 569 -NQLKTRYSSAQ-LRVLTLKPSFKKRPL----ESETYAGE-GGNVTIFCNPEAAPKPKFV 621
L +Y + + +TL+ + RP+ +ET + G + + CN
Sbjct: 183 YTYLGKQYPITRVIEFITLEENKPTRPVIVSPANETMEVDLGSQIQLICNVTGQLSDIAY 242
Query: 622 WKKDGNIIGS---------------GGRRKIFENGNLLISPV-SRDDSGIYSCTATNVHG 665
WK +G++I +R+ L IS + SR ++C A N HG
Sbjct: 243 WKWNGSVIDEDDPVLGEDYYSVENPANKRRSTLITVLNISEIESRFYKHPFTCFAKNTHG 302
Query: 666 MDESKGRLI 674
+D + +LI
Sbjct: 303 IDAAYIQLI 311
Score = 29.6 bits (65), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 30/131 (22%), Positives = 53/131 (40%), Gaps = 14/131 (10%)
Query: 428 VPSYNWTRRGSPLPR-NAYFENFNRILTIPNVKVEDQGEYICRASNDRSALESSVTISIQ 486
+P W + PL N +F L + NV + +G Y C AS + +T I+
Sbjct: 138 LPKLQWYKDCKPLLLDNIHFSGVKDRLIVMNVAEKHRGNYTCHASYTYLGKQYPITRVIE 197
Query: 487 ---------AEPNFTIPLTDK-HMDNQADLTWTCEAFG-VPDVTYSWFRNGELLNSETLP 535
P P + +D + + C G + D+ Y W NG +++ E P
Sbjct: 198 FITLEENKPTRPVIVSPANETMEVDLGSQIQLICNVTGQLSDIAY-WKWNGSVID-EDDP 255
Query: 536 LEDQDRYFIQD 546
+ +D Y +++
Sbjct: 256 VLGEDYYSVEN 266
>pdb|3ZYJ|A Chain A, Netring1 In Complex With Ngl1
pdb|3ZYJ|C Chain C, Netring1 In Complex With Ngl1
Length = 440
Score = 31.2 bits (69), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 37/86 (43%), Gaps = 5/86 (5%)
Query: 686 PPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEIT 745
P + + +L+C A T L V++I T NG M + + G L T
Sbjct: 348 PADLNVTEGMAAELKCRASTS-LTSVSWI-TPNGTV---MTHGAYKVRIAVLSDGTLNFT 402
Query: 746 NASFADAGEYECVVKSTVGKISTKTT 771
N + D G Y C+V ++VG + T
Sbjct: 403 NVTVQDTGMYTCMVSNSVGNTTASAT 428
>pdb|1DGI|R Chain R, Cryo-Em Structure Of Human Poliovirus(Serotype 1)complexed
With Three Domain Cd155
pdb|1NN8|R Chain R, Cryoem Structure Of Poliovirus Receptor Bound To
Poliovirus
pdb|1NN8|S Chain S, Cryoem Structure Of Poliovirus Receptor Bound To
Poliovirus
pdb|1NN8|T Chain T, Cryoem Structure Of Poliovirus Receptor Bound To
Poliovirus
Length = 302
Score = 31.2 bits (69), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 56/274 (20%), Positives = 102/274 (37%), Gaps = 43/274 (15%)
Query: 409 EAPKAGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYFENFNRILTIPNVKVEDQGEYIC 468
+ P + RLE VA R G+ L RNA F ++VED+G Y C
Sbjct: 55 QGPSYSESKRLEFVA----------ARLGAEL-RNASLRMFG-------LRVEDEGNYTC 96
Query: 469 R-ASNDRSALESSVTISIQAEPNFTIPLTDKHMDNQADLTWTC-EAFGVPDVTYSWFRN- 525
+ + + + + + A+P T + + + C G P +W +
Sbjct: 97 LFVTFPQGSRSVDIWLRVLAKPQNTAEVQKVQLTGEPVPMARCVSTGGRPPAQITWHSDL 156
Query: 526 GELLNSETLPLEDQDRYFIQDNV----LTIRYLNPERDPAMYQCRAKNQLKTRYSSAQLR 581
G + N+ +P F+ V L I + + D C+ +++ + QL
Sbjct: 157 GGMPNTSQVP------GFLSGTVTVTSLWILVPSSQVDGKNVTCKVEHE---SFEKPQLL 207
Query: 582 VLTLK----PSFKKRPLESETYAGEGGNVTIFCNPEAAPKPK-FVWKKDGNIIGSGGRRK 636
+ L P ++ Y G+ T+ C+ + P+P + W +G
Sbjct: 208 TVNLTVYYPPEVSISGYDNNWYLGQ-NEATLTCDARSNPEPTGYNWS---TTMGPLPPFA 263
Query: 637 IFENGNLLISPVSRDDSGIYSCTATNVHGMDESK 670
+ + LLI PV + + C TN G +++
Sbjct: 264 VAQGAQLLIRPVDKPINTTLICNVTNALGARQAE 297
>pdb|4DEP|B Chain B, Structure Of The Il-1b Signaling Complex
pdb|4DEP|E Chain E, Structure Of The Il-1b Signaling Complex
Length = 321
Score = 31.2 bits (69), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 55/249 (22%), Positives = 95/249 (38%), Gaps = 40/249 (16%)
Query: 459 KVEDQGEYICRASNDRSALESSVTIS-IQAEPNFTI---PLTDKHMDNQADLTWTCEAFG 514
KVED G Y C N L ++ ++ EPN + + + D C
Sbjct: 72 KVEDSGHYYCVVRNSSYCLRIKISAKFVENEPNLCYNAQAIFKQKLPVAGDGGLVC---- 127
Query: 515 VPDVTYSWFRNGELLN----SETLPLEDQDRYF--IQDNVLTIRYLNPERDPAMYQCRAK 568
P + + N EL + PL + +F ++D ++ + E+ Y C A
Sbjct: 128 -PYMEFFKNENNELPKLQWYKDCKPLLLDNIHFSGVKDRLIVMNV--AEKHRGNYTCHAS 184
Query: 569 -NQLKTRYSSAQ-LRVLTLKPSFKKRPL----ESETYAGE-GGNVTIFCNPEAAPKPKFV 621
L +Y + + +TL+ + RP+ +ET + G + + CN
Sbjct: 185 YTYLGKQYPITRVIEFITLEENKPTRPVIVSPANETMEVDLGSQIQLICNVTGQLSDIAY 244
Query: 622 WKKDGNIIGS---------------GGRRKIFENGNLLISPV-SRDDSGIYSCTATNVHG 665
WK +G++I +R+ L IS + SR ++C A N HG
Sbjct: 245 WKWNGSVIDEDDPVLGEDYYSVENPANKRRSTLITVLNISEIESRFYKHPFTCFAKNTHG 304
Query: 666 MDESKGRLI 674
+D + +LI
Sbjct: 305 IDAAYIQLI 313
Score = 29.6 bits (65), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 30/131 (22%), Positives = 53/131 (40%), Gaps = 14/131 (10%)
Query: 428 VPSYNWTRRGSPLPR-NAYFENFNRILTIPNVKVEDQGEYICRASNDRSALESSVTISIQ 486
+P W + PL N +F L + NV + +G Y C AS + +T I+
Sbjct: 140 LPKLQWYKDCKPLLLDNIHFSGVKDRLIVMNVAEKHRGNYTCHASYTYLGKQYPITRVIE 199
Query: 487 ---------AEPNFTIPLTDK-HMDNQADLTWTCEAFG-VPDVTYSWFRNGELLNSETLP 535
P P + +D + + C G + D+ Y W NG +++ E P
Sbjct: 200 FITLEENKPTRPVIVSPANETMEVDLGSQIQLICNVTGQLSDIAY-WKWNGSVID-EDDP 257
Query: 536 LEDQDRYFIQD 546
+ +D Y +++
Sbjct: 258 VLGEDYYSVEN 268
>pdb|1F6A|A Chain A, Structure Of The Human Ige-Fc Bound To Its High Affinity
Receptor Fc(Epsilon)ri(Alpha)
Length = 176
Score = 31.2 bits (69), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 44/180 (24%), Positives = 71/180 (39%), Gaps = 24/180 (13%)
Query: 414 GDKVRLECVAFGY-PVPSYNWTRRGSPLPRNAYFENFNRILTIPNVKVEDQGEYICRASN 472
G+ V L C + V S W GS E N L I N K ED GEY C+ +
Sbjct: 19 GENVTLTCNGNNFFEVSSTKWFHNGS------LSEETNSSLNIVNAKFEDSGEYKCQ--H 70
Query: 473 DRSALESSVTISIQAEPNFTIPLTDKHMDNQADLTWTCEAFGVPDV-TYSWFRNGELLNS 531
+ A V + + ++ + M+ Q L C + DV ++++GE L
Sbjct: 71 QQVAESEPVYLEVFSDWLLLQASAEVVMEGQP-LFLRCHGWRNWDVYKVIYYKDGEAL-- 127
Query: 532 ETLPLEDQDRYFIQDNVLTIRYLNPERDPAMYQCRAKNQLKTRYSSAQLRVLTLKPSFKK 591
+Y+ +++ ++I E D Y C K + Y S L + +K +K
Sbjct: 128 ---------KYWYENHAISITNAAAE-DSGTYYCTGK-VWQLDYESEPLNITVIKAPREK 176
Score = 29.6 bits (65), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 33/73 (45%), Gaps = 16/73 (21%)
Query: 686 PPKITIAAHRNLQLRCSAHTEELLDVAYI-WTHNGVRIGNMDLNELETPNINIDGGLLEI 744
PP I N+ L C+ + +V+ W HNG L+E ++NI
Sbjct: 11 PPWNRIFKGENVTLTCNGNN--FFEVSSTKWFHNG------SLSEETNSSLNI------- 55
Query: 745 TNASFADAGEYEC 757
NA F D+GEY+C
Sbjct: 56 VNAKFEDSGEYKC 68
>pdb|1HYR|B Chain B, Crystal Structure Of Human Mica In Complex With Natural
Killer Cell Receptor Nkg2d
pdb|1HYR|A Chain A, Crystal Structure Of Human Mica In Complex With Natural
Killer Cell Receptor Nkg2d
Length = 137
Score = 31.2 bits (69), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 12/49 (24%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
Query: 29 CPQHWVQYRDSCYRFVKSPLKTRNDAKLNCKSLDSDLANVNDADEHGFI 77
CP++W+ Y+++CY+F K +++ +C S ++ L V ++ +
Sbjct: 20 CPKNWICYKNNCYQFFDES-KNWYESQASCMSQNASLLKVYSKEDQDLL 67
>pdb|1IRA|Y Chain Y, Complex Of The Interleukin-1 Receptor With The
Interleukin-1 Receptor Antagonist (il1ra)
pdb|4GAF|B Chain B, Crystal Structure Of Ebi-005, A Chimera Of Human Il-1beta
And Il-1ra, Bound To Human Interleukin-1 Receptor Type 1
Length = 319
Score = 31.2 bits (69), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 55/249 (22%), Positives = 95/249 (38%), Gaps = 40/249 (16%)
Query: 459 KVEDQGEYICRASNDRSALESSVTIS-IQAEPNFTI---PLTDKHMDNQADLTWTCEAFG 514
KVED G Y C N L ++ ++ EPN + + + D C
Sbjct: 70 KVEDSGHYYCVVRNSSYCLRIKISAKFVENEPNLCYNAQAIFKQKLPVAGDGGLVC---- 125
Query: 515 VPDVTYSWFRNGELLN----SETLPLEDQDRYF--IQDNVLTIRYLNPERDPAMYQCRAK 568
P + + N EL + PL + +F ++D ++ + E+ Y C A
Sbjct: 126 -PYMEFFKNENNELPKLQWYKDCKPLLLDNIHFSGVKDRLIVMNV--AEKHRGNYTCHAS 182
Query: 569 -NQLKTRYSSAQ-LRVLTLKPSFKKRPL----ESETYAGE-GGNVTIFCNPEAAPKPKFV 621
L +Y + + +TL+ + RP+ +ET + G + + CN
Sbjct: 183 YTYLGKQYPITRVIEFITLEENKPTRPVIVSPANETMEVDLGSQIQLICNVTGQLSDIAY 242
Query: 622 WKKDGNIIGS---------------GGRRKIFENGNLLISPV-SRDDSGIYSCTATNVHG 665
WK +G++I +R+ L IS + SR ++C A N HG
Sbjct: 243 WKWNGSVIDEDDPVLGEDYYSVENPANKRRSTLITVLNISEIESRFYKHPFTCFAKNTHG 302
Query: 666 MDESKGRLI 674
+D + +LI
Sbjct: 303 IDAAYIQLI 311
Score = 29.6 bits (65), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 30/131 (22%), Positives = 53/131 (40%), Gaps = 14/131 (10%)
Query: 428 VPSYNWTRRGSPLPR-NAYFENFNRILTIPNVKVEDQGEYICRASNDRSALESSVTISIQ 486
+P W + PL N +F L + NV + +G Y C AS + +T I+
Sbjct: 138 LPKLQWYKDCKPLLLDNIHFSGVKDRLIVMNVAEKHRGNYTCHASYTYLGKQYPITRVIE 197
Query: 487 ---------AEPNFTIPLTDK-HMDNQADLTWTCEAFG-VPDVTYSWFRNGELLNSETLP 535
P P + +D + + C G + D+ Y W NG +++ E P
Sbjct: 198 FITLEENKPTRPVIVSPANETMEVDLGSQIQLICNVTGQLSDIAY-WKWNGSVID-EDDP 255
Query: 536 LEDQDRYFIQD 546
+ +D Y +++
Sbjct: 256 VLGEDYYSVEN 266
>pdb|2LS8|A Chain A, Solution Structure Of Human C-Type Lectin Domain Family
4 Member D
Length = 156
Score = 31.2 bits (69), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 33/69 (47%), Gaps = 6/69 (8%)
Query: 27 LRCPQHWVQYRDSCYRFVKSPLKTRNDAKLNCKSLDSDLANVNDADEHGFIMYQLFWQDP 86
+ CP W ++ +CY F + KT +++ NC + + L ++ E FI+ L
Sbjct: 1 MVCPIDWRAFQSNCY-FPLTDNKTWAESERNCSGMGAHLMTISTEAEQNFIIQFL----- 54
Query: 87 QRRKWYFGG 95
RR YF G
Sbjct: 55 DRRLSYFLG 63
>pdb|4DCQ|A Chain A, Crystal Structure Of The Fab Fragment Of 3b5h10, An
Antibody-Specific For Extended Polyglutamine Repeats
(Orthorhombic Form)
Length = 218
Score = 30.8 bits (68), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 22/88 (25%), Positives = 38/88 (43%), Gaps = 11/88 (12%)
Query: 450 NRILTIPNVKVEDQGEYICRASND---------RSALESSVTISIQAEPNFTI--PLTDK 498
+R L I N++ ED+ YIC + + +V ++ P T+ P +++
Sbjct: 73 DRYLLISNIQPEDEAIYICGVGDTIKEQFVYVFGGGTKVTVLGQPKSTPTLTVFPPSSEE 132
Query: 499 HMDNQADLTWTCEAFGVPDVTYSWFRNG 526
+N+A L F VT +W NG
Sbjct: 133 LKENKATLVCLISNFSPSGVTVAWKANG 160
>pdb|3EOY|G Chain G, Structure Of Reovirus Sigma1 In Complex With Its Receptor
Junctional Adhesion Molecule-A
pdb|3EOY|H Chain H, Structure Of Reovirus Sigma1 In Complex With Its Receptor
Junctional Adhesion Molecule-A
pdb|3EOY|I Chain I, Structure Of Reovirus Sigma1 In Complex With Its Receptor
Junctional Adhesion Molecule-A
pdb|3EOY|J Chain J, Structure Of Reovirus Sigma1 In Complex With Its Receptor
Junctional Adhesion Molecule-A
pdb|3EOY|K Chain K, Structure Of Reovirus Sigma1 In Complex With Its Receptor
Junctional Adhesion Molecule-A
pdb|3EOY|L Chain L, Structure Of Reovirus Sigma1 In Complex With Its Receptor
Junctional Adhesion Molecule-A
Length = 104
Score = 30.8 bits (68), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 31/74 (41%), Gaps = 3/74 (4%)
Query: 210 NDITLSCYAGGYPNPSYEWFKEDYVQDRLVA--NLIDPLSDKRFTLSGGNLIINDPRQVE 267
N + LSC G+ +P EW + RLV N I + R T + + E
Sbjct: 19 NPVKLSCAYSGFSSPRVEWKFDQGDTTRLVCYNNKITASYEDRVTFLPTGITFKSVTR-E 77
Query: 268 DRGSYHCKASNKFG 281
D G+Y C S + G
Sbjct: 78 DTGTYTCMVSEEGG 91
>pdb|2E7C|A Chain A, Solution Structure Of The 6th Ig-Like Domain From Human
Myosin-Binding Protein C, Fast-Type
Length = 118
Score = 30.8 bits (68), Expect = 3.9, Method: Composition-based stats.
Identities = 18/74 (24%), Positives = 34/74 (45%), Gaps = 5/74 (6%)
Query: 396 QLKFPNNFPKTFPEAPKAGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYF---ENFNRI 452
+++ P + +T+ K G+++ L G P P WT+ G+PL + +F+ +
Sbjct: 23 KIRLPRHLRQTYIR--KVGEQLNLVVPFQGKPRPQVVWTKGGAPLDTSRVHVRTSDFDTV 80
Query: 453 LTIPNVKVEDQGEY 466
+ D GEY
Sbjct: 81 FFVRQAARSDSGEY 94
>pdb|1KCG|A Chain A, Nkg2d In Complex With Ulbp3
pdb|1KCG|B Chain B, Nkg2d In Complex With Ulbp3
Length = 124
Score = 30.8 bits (68), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 12/49 (24%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
Query: 29 CPQHWVQYRDSCYRFVKSPLKTRNDAKLNCKSLDSDLANVNDADEHGFI 77
CP++W+ Y+++CY+F K +++ +C S ++ L V ++ +
Sbjct: 7 CPKNWICYKNNCYQFFDES-KNWYESQASCMSQNASLLKVYSKEDQDLL 54
>pdb|1F2Q|A Chain A, Crystal Structure Of The Human High-Affinity Ige Receptor
pdb|1J86|A Chain A, Human High Affinity Fc Receptor Fc(Epsilon)ri(Alpha),
Monoclinic Crystal Form 2
pdb|1J86|B Chain B, Human High Affinity Fc Receptor Fc(Epsilon)ri(Alpha),
Monoclinic Crystal Form 2
pdb|1RPQ|A Chain A, High Affinity Ige Receptor (Alpha Chain) Complexed With
Tight-Binding E131 'zeta' Peptide From Phage Display
pdb|1RPQ|B Chain B, High Affinity Ige Receptor (Alpha Chain) Complexed With
Tight-Binding E131 'zeta' Peptide From Phage Display
pdb|1RPQ|C Chain C, High Affinity Ige Receptor (Alpha Chain) Complexed With
Tight-Binding E131 'zeta' Peptide From Phage Display
pdb|1RPQ|D Chain D, High Affinity Ige Receptor (Alpha Chain) Complexed With
Tight-Binding E131 'zeta' Peptide From Phage Display
Length = 176
Score = 30.8 bits (68), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 36/92 (39%), Gaps = 20/92 (21%)
Query: 414 GDKVRLECVAFGY-PVPSYNWTRRGSPLPRNAYFENFNRILTIPNVKVEDQGEYICRAS- 471
G+ V L C + V S W GS E N L I N K ED GEY C+
Sbjct: 19 GENVTLTCNGNNFFEVSSTKWFHNGS------LSEETNSSLNIVNAKFEDSGEYKCQHQQ 72
Query: 472 ------------NDRSALESSVTISIQAEPNF 491
+D L++S + ++ +P F
Sbjct: 73 VNESEPVYLEVFSDWLLLQASAEVVMEGQPLF 104
Score = 29.6 bits (65), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 33/73 (45%), Gaps = 16/73 (21%)
Query: 686 PPKITIAAHRNLQLRCSAHTEELLDVAYI-WTHNGVRIGNMDLNELETPNINIDGGLLEI 744
PP I N+ L C+ + +V+ W HNG L+E ++NI
Sbjct: 11 PPWNRIFKGENVTLTCNGNN--FFEVSSTKWFHNG------SLSEETNSSLNI------- 55
Query: 745 TNASFADAGEYEC 757
NA F D+GEY+C
Sbjct: 56 VNAKFEDSGEYKC 68
>pdb|1J89|A Chain A, Human High Affinity Fc Receptor Fc(Epsilon)ri(Alpha),
Tetragonal Crystal Form 2
pdb|1J89|B Chain B, Human High Affinity Fc Receptor Fc(Epsilon)ri(Alpha),
Tetragonal Crystal Form 2
pdb|1J89|C Chain C, Human High Affinity Fc Receptor Fc(Epsilon)ri(Alpha),
Tetragonal Crystal Form 2
pdb|1J89|D Chain D, Human High Affinity Fc Receptor Fc(Epsilon)ri(Alpha),
Tetragonal Crystal Form 2
pdb|1J89|E Chain E, Human High Affinity Fc Receptor Fc(Epsilon)ri(Alpha),
Tetragonal Crystal Form 2
pdb|1J88|A Chain A, Human High Affinity Fc Receptor Fc(epsilon)ri(alpha),
Tetragonal Crystal Form 1
pdb|1J88|B Chain B, Human High Affinity Fc Receptor Fc(epsilon)ri(alpha),
Tetragonal Crystal Form 1
pdb|1J88|C Chain C, Human High Affinity Fc Receptor Fc(epsilon)ri(alpha),
Tetragonal Crystal Form 1
pdb|1J88|D Chain D, Human High Affinity Fc Receptor Fc(epsilon)ri(alpha),
Tetragonal Crystal Form 1
pdb|1J88|E Chain E, Human High Affinity Fc Receptor Fc(epsilon)ri(alpha),
Tetragonal Crystal Form 1
Length = 172
Score = 30.8 bits (68), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 36/92 (39%), Gaps = 20/92 (21%)
Query: 414 GDKVRLECVAFGY-PVPSYNWTRRGSPLPRNAYFENFNRILTIPNVKVEDQGEYICRAS- 471
G+ V L C + V S W GS E N L I N K ED GEY C+
Sbjct: 19 GENVTLTCNGNNFFEVSSTKWFHNGS------LSEETNSSLNIVNAKFEDSGEYKCQHQQ 72
Query: 472 ------------NDRSALESSVTISIQAEPNF 491
+D L++S + ++ +P F
Sbjct: 73 VNESEPVYLEVFSDWLLLQASAEVVMEGQPLF 104
Score = 29.6 bits (65), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 33/73 (45%), Gaps = 16/73 (21%)
Query: 686 PPKITIAAHRNLQLRCSAHTEELLDVAYI-WTHNGVRIGNMDLNELETPNINIDGGLLEI 744
PP I N+ L C+ + +V+ W HNG L+E ++NI
Sbjct: 11 PPWNRIFKGENVTLTCNGNN--FFEVSSTKWFHNG------SLSEETNSSLNI------- 55
Query: 745 TNASFADAGEYEC 757
NA F D+GEY+C
Sbjct: 56 VNAKFEDSGEYKC 68
>pdb|1J87|A Chain A, Human High Affinity Fc Receptor Fc(Epsilon)ri(Alpha),
Hexagonal Crystal Form 1
Length = 172
Score = 30.4 bits (67), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 36/92 (39%), Gaps = 20/92 (21%)
Query: 414 GDKVRLECVAFGY-PVPSYNWTRRGSPLPRNAYFENFNRILTIPNVKVEDQGEYICRAS- 471
G+ V L C + V S W GS E N L I N K ED GEY C+
Sbjct: 19 GENVTLTCNGNNFFEVSSTKWFHNGS------LSEETNSSLNIVNAKFEDSGEYKCQHQQ 72
Query: 472 ------------NDRSALESSVTISIQAEPNF 491
+D L++S + ++ +P F
Sbjct: 73 VNESEPVYLEVFSDWLLLQASAEVVMEGQPLF 104
Score = 29.6 bits (65), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 33/73 (45%), Gaps = 16/73 (21%)
Query: 686 PPKITIAAHRNLQLRCSAHTEELLDVAYI-WTHNGVRIGNMDLNELETPNINIDGGLLEI 744
PP I N+ L C+ + +V+ W HNG L+E ++NI
Sbjct: 11 PPWNRIFKGENVTLTCNGNN--FFEVSSTKWFHNG------SLSEETNSSLNI------- 55
Query: 745 TNASFADAGEYEC 757
NA F D+GEY+C
Sbjct: 56 VNAKFEDSGEYKC 68
>pdb|3MJ6|A Chain A, Crystal Structure Of The Gammadelta T Cell Costimulatory
Receptor Junctional Adhesion Molecule-Like Protein, Jaml
pdb|3MJ7|A Chain A, Crystal Structure Of The Complex Of Jaml And Coxsackie And
Adenovirus Receptor, Car
pdb|3MJ9|A Chain A, Crystal Structure Of Jaml In Complex With The Stimulatory
Antibody Hl4e10
Length = 268
Score = 30.4 bits (67), Expect = 5.0, Method: Composition-based stats.
Identities = 37/160 (23%), Positives = 66/160 (41%), Gaps = 40/160 (25%)
Query: 640 NGNLLISPVSRDDSGIYSCTATNVHGMDESKGRLIVLHGPSYYEQLPPK---ITIAAHRN 696
+G+LL+ V + D GIY+C K +V+ P LP + + +
Sbjct: 83 DGSLLLQDVQKADEGIYTCEI-------RLKNESMVMKKPVELWVLPEEPRDLRVRVGDT 135
Query: 697 LQLRCS-------------------AHTEELLDVAYIWTHNGVRIGNMD-----LNELE- 731
Q+RCS +HTEE ++Y + +R G N ++
Sbjct: 136 TQMRCSIQSTEEKRVTKVNWMFSSGSHTEEETVLSY---DSNMRSGKFQSLGRFRNRVDL 192
Query: 732 TPNINIDGGLLEITNASFADAGEYECVVKSTVGKISTKTT 771
T +I+ + G +++ +D G Y C + VGK+ ++ T
Sbjct: 193 TGDISRNDGSIKLQTVKESDQGIYTCSI--YVGKLESRKT 230
>pdb|1CDU|A Chain A, Structure Of T-Cell Surface Glycoprotein Cd4 Mutant With
Phe 43 Replaced By Val
Length = 178
Score = 30.4 bits (67), Expect = 5.2, Method: Composition-based stats.
Identities = 30/122 (24%), Positives = 46/122 (37%), Gaps = 29/122 (23%)
Query: 412 KAGDKVRLECVAFGYPVPSYNWTR---------RGSPL------------PRNAYFENFN 450
K GD V L C A ++W +GS L R + ++ N
Sbjct: 7 KKGDTVELTCTASQKKSIQFHWKNSNQIKILGNQGSVLTKGPSKLNDRADSRRSLWDQGN 66
Query: 451 RILTIPNVKVEDQGEYICRASNDRSALESSVTISIQAEPNFTIPLTDKHMDNQADLTWTC 510
L I N+K+ED YIC + + ++ V + A +D H+ LT T
Sbjct: 67 FPLIIKNLKIEDSDTYICEVEDQKEEVQLLV-FGLTAN-------SDTHLLQGQSLTLTL 118
Query: 511 EA 512
E+
Sbjct: 119 ES 120
>pdb|2L7J|A Chain A, Solution Structure Of The Third Immunoglobulin-Like Domain
Of Nectin-1
Length = 95
Score = 30.4 bits (67), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 28/70 (40%), Gaps = 2/70 (2%)
Query: 417 VRLECVAFGYP-VPSYNWTRRGSPLPRNAYFENFNRILTIPNVKVEDQGEYICRASNDRS 475
V+L C A P Y+WT LP+ +N P + G YIC A+N
Sbjct: 25 VKLTCKADANPPATEYHWTTLNGSLPKGVEAQNRTLFFRGP-ITYSLAGTYICEATNPIG 83
Query: 476 ALESSVTISI 485
V ++I
Sbjct: 84 TRSGQVEVNI 93
>pdb|2DOC|A Chain A, Solution Structure Of The Fibronectin Type-Iii Domain Of
Human Neural Cell Adhesion Molecule 2
Length = 119
Score = 30.4 bits (67), Expect = 5.6, Method: Composition-based stats.
Identities = 25/96 (26%), Positives = 40/96 (41%), Gaps = 11/96 (11%)
Query: 791 KTSATIQWTDGATNGR-PITHYKIIARTNWNSTWFNVSEHVIGKEVDRYTGRKEASIENV 849
+T+A + + ++G PI HY++ + + W V H G + + N
Sbjct: 31 QTTAKVSFNKPDSHGGVPIHHYQVDVKEVASEIWKIVRSH----------GVQTMVVLNN 80
Query: 850 LVPWSTYEFKVIAGNELGYGEPSSPSPQYNTPADKP 885
L P +TYE +V A N G G+ S P P
Sbjct: 81 LEPNTTYEIRVAAVNGKGQGDYSKIEIFQTLPVSGP 116
>pdb|4FMF|A Chain A, Crystal Structure Of Human Nectin-1 Full Ectodomain
(D1-D3)
pdb|4FMF|B Chain B, Crystal Structure Of Human Nectin-1 Full Ectodomain
(D1-D3)
pdb|4FMF|C Chain C, Crystal Structure Of Human Nectin-1 Full Ectodomain
(D1-D3)
pdb|4FMF|D Chain D, Crystal Structure Of Human Nectin-1 Full Ectodomain
(D1-D3)
Length = 313
Score = 30.4 bits (67), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 29/74 (39%), Gaps = 2/74 (2%)
Query: 417 VRLECVAFGYP-VPSYNWTRRGSPLPRNAYFENFNRILTIPNVKVEDQGEYICRASNDRS 475
V+L C A P Y+WT LP+ +N P + G YIC A+N
Sbjct: 235 VKLTCKADANPPATEYHWTTLNGSLPKGVEAQNRTLFFKGP-INYSLAGTYICEATNPIG 293
Query: 476 ALESSVTISIQAEP 489
V ++I P
Sbjct: 294 TRSGQVEVNITEFP 307
>pdb|7FAB|L Chain L, Crystal Structure Of Human Immunoglobulin Fragment Fab New
Refined At 2.0 Angstroms Resolution
Length = 208
Score = 30.0 bits (66), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 32/134 (23%), Positives = 59/134 (44%), Gaps = 17/134 (12%)
Query: 453 LTIPNVKVEDQGEYICRASNDRS------ALESSVTISIQAEPNFTI--PLTDKHMDNQA 504
L I ++ ED+ +Y C+ S DRS + +V +A P+ T+ P +++ N+A
Sbjct: 68 LAITGLQAEDEADYYCQ-SYDRSLRVFGGGTKLTVLRQPKAAPSVTLFPPSSEELQANKA 126
Query: 505 DLTWTCEAFGVPDVTYSWFRNGELLNS---ETLPLEDQDRYFIQDNVLTIRYLNPE--RD 559
L F VT +W +G + + T P + + + + L+ L PE +
Sbjct: 127 TLVCLISDFYPGAVTVAWKADGSPVKAGVETTTPSKQSNNKYAASSYLS---LTPEQWKS 183
Query: 560 PAMYQCRAKNQLKT 573
Y C+ ++ T
Sbjct: 184 HKSYSCQVTHEGST 197
>pdb|2BPE|A Chain A, Structure Of Murine Dectin-1
pdb|2BPE|B Chain B, Structure Of Murine Dectin-1
pdb|2BPH|A Chain A, Structure Of Murine Dectin-1
pdb|2BPH|B Chain B, Structure Of Murine Dectin-1
Length = 140
Score = 30.0 bits (66), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 27/99 (27%), Positives = 39/99 (39%), Gaps = 23/99 (23%)
Query: 29 CPQHWVQYRDSCYRFVKSPLKTRNDAKLNCKSLDSDLANVNDADEHGFIMYQL------- 81
C +W+ + SCY F S + +K +C L + L ++++ E FI Q
Sbjct: 8 CLPNWIMHGKSCYLFSFSG-NSWYGSKRHCSQLGAHLLKIDNSKEFEFIESQTSSHRINA 66
Query: 82 FWQDPQRRKWYFGGTQQSPNLWVNEDGTNLNELDAAFLP 120
FW R QS W EDG+ AF P
Sbjct: 67 FWIGLSRN--------QSEGPWFWEDGS-------AFFP 90
>pdb|3SKU|E Chain E, Herpes Simplex Virus Glycoprotein D Bound To The Human
Receptor Nectin-1
pdb|3SKU|D Chain D, Herpes Simplex Virus Glycoprotein D Bound To The Human
Receptor Nectin-1
pdb|3SKU|F Chain F, Herpes Simplex Virus Glycoprotein D Bound To The Human
Receptor Nectin-1
Length = 319
Score = 30.0 bits (66), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 29/74 (39%), Gaps = 2/74 (2%)
Query: 417 VRLECVAFGYP-VPSYNWTRRGSPLPRNAYFENFNRILTIPNVKVEDQGEYICRASNDRS 475
V+L C A P Y+WT LP+ +N P + G YIC A+N
Sbjct: 235 VKLTCKADANPPATEYHWTTLNGSLPKGVEAQNRTLFFKGP-INYSLAGTYICEATNPIG 293
Query: 476 ALESSVTISIQAEP 489
V ++I P
Sbjct: 294 TRSGQVEVNITEFP 307
>pdb|2CL8|A Chain A, Dectin-1 In Complex With Beta-Glucan
pdb|2CL8|B Chain B, Dectin-1 In Complex With Beta-Glucan
Length = 139
Score = 30.0 bits (66), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 27/99 (27%), Positives = 39/99 (39%), Gaps = 23/99 (23%)
Query: 29 CPQHWVQYRDSCYRFVKSPLKTRNDAKLNCKSLDSDLANVNDADEHGFIMYQ-------L 81
C +W+ + SCY F S + +K +C L + L ++++ E FI Q
Sbjct: 7 CLPNWIMHGKSCYLFSFSG-NSWYGSKRHCSQLGAHLLKIDNSKEFEFIESQTSSHRINA 65
Query: 82 FWQDPQRRKWYFGGTQQSPNLWVNEDGTNLNELDAAFLP 120
FW R QS W EDG+ AF P
Sbjct: 66 FWIGLSRN--------QSEGPWFWEDGS-------AFFP 89
>pdb|2ADF|H Chain H, Crystal Structure And Paratope Determination Of 82d6a3, An
Antithrombotic Antibody Directed Against The Von
Willebrand Factor A3-Domain
Length = 218
Score = 30.0 bits (66), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 29/109 (26%), Positives = 41/109 (37%), Gaps = 32/109 (29%)
Query: 408 PEAPKAGDKVRLECVAFGYPVPSY--NWTRRG------------SPLPRNAYFENF---- 449
PE K G+ V++ C A GY +Y NW ++ + Y E F
Sbjct: 9 PELKKPGETVKISCKASGYTFINYGMNWVKQAPGKGLKWMGWKNTNTGETTYGEEFRGRF 68
Query: 450 ---------NRILTIPNVKVEDQGEYICRASNDRSALE-----SSVTIS 484
L I N+K ED Y C N AL+ ++VT+S
Sbjct: 69 AFSLETSVSTAYLQINNLKNEDTATYFCARDNPYYALDYWGQGTTVTVS 117
>pdb|1CDY|A Chain A, Structure Of T-Cell Surface Glycoprotein Cd4 Mutant With
Gly 47 Replaced By Ser
Length = 178
Score = 30.0 bits (66), Expect = 6.6, Method: Composition-based stats.
Identities = 30/122 (24%), Positives = 46/122 (37%), Gaps = 29/122 (23%)
Query: 412 KAGDKVRLECVAFGYPVPSYNW----------------TRRGSPL-----PRNAYFENFN 450
K GD V L C A ++W T+ S L R + ++ N
Sbjct: 7 KKGDTVELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKSPSKLNDRADSRRSLWDQGN 66
Query: 451 RILTIPNVKVEDQGEYICRASNDRSALESSVTISIQAEPNFTIPLTDKHMDNQADLTWTC 510
L I N+K+ED YIC + + ++ V + A +D H+ LT T
Sbjct: 67 FPLIIKNLKIEDSDTYICEVEDQKEEVQLLV-FGLTAN-------SDTHLLQGQSLTLTL 118
Query: 511 EA 512
E+
Sbjct: 119 ES 120
>pdb|2FL5|L Chain L, Cofactor-Containing Antibodies: Crystal Structure Of The
Original Yellow Antibody
pdb|2FL5|A Chain A, Cofactor-Containing Antibodies: Crystal Structure Of The
Original Yellow Antibody
pdb|2FL5|C Chain C, Cofactor-Containing Antibodies: Crystal Structure Of The
Original Yellow Antibody
pdb|2FL5|E Chain E, Cofactor-Containing Antibodies: Crystal Structure Of The
Original Yellow Antibody
Length = 209
Score = 30.0 bits (66), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 31/133 (23%), Positives = 57/133 (42%), Gaps = 15/133 (11%)
Query: 453 LTIPNVKVEDQGEYICRA--SNDRSALESSVTISI---QAEPNFTI--PLTDKHMDNQAD 505
LTI +VED+ +Y C + SN +S+ +A P+ T+ P +++ N+A
Sbjct: 72 LTISGAQVEDEADYYCYSDISNGYPLFGGGTKLSVGQPKAAPSVTLFPPSSEELQANKAT 131
Query: 506 LTWTCEAFGVPDVTYSWFRNGELLNS---ETLPLEDQDRYFIQDNVLTIRYLNPE--RDP 560
L F VT +W + + + T P + + + + L+ L PE +
Sbjct: 132 LVCLISDFYPGAVTVAWKADSSPIKAGVETTTPSKQSNNKYAASSYLS---LTPEQWKSH 188
Query: 561 AMYQCRAKNQLKT 573
Y C+ ++ T
Sbjct: 189 RSYSCQVTHEGST 201
>pdb|1T4K|A Chain A, Crystal Structure Of Unliganded Aldolase Antibody 93f3 Fab
pdb|1T4K|C Chain C, Crystal Structure Of Unliganded Aldolase Antibody 93f3 Fab
Length = 217
Score = 30.0 bits (66), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 32/131 (24%), Positives = 55/131 (41%), Gaps = 12/131 (9%)
Query: 453 LTIPNVKVEDQGEYICRASNDRSALESSVTISIQ---AEPNFTI--PLTDKHMDNQADLT 507
LTI +V+ ED Y C+ S D + + ++ A P +I P +++ A +
Sbjct: 79 LTISSVQAEDLAIYYCKQSYDLPTFGAGTKLELKRSDAAPTVSIFPPSSEQLTSGGASVV 138
Query: 508 WTCEAFGVPDVTYSWFRNGE-----LLNSETLPLEDQDRYFIQDNVLTIRYLNPERDPAM 562
F D+ W +G +LNS T + +D + + LT+ ER +
Sbjct: 139 CFLNNFYPKDINVKWKIDGSERQNGVLNSWT-DQDSKDSTYSMSSTLTLTKDEYERHNS- 196
Query: 563 YQCRAKNQLKT 573
Y C A ++ T
Sbjct: 197 YTCEATHKTST 207
>pdb|3ALP|A Chain A, Cell Adhesion Protein
pdb|3ALP|B Chain B, Cell Adhesion Protein
pdb|3U83|A Chain A, Crystal Structure Of Nectin-1
Length = 331
Score = 30.0 bits (66), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 28/70 (40%), Gaps = 2/70 (2%)
Query: 417 VRLECVAFGYP-VPSYNWTRRGSPLPRNAYFENFNRILTIPNVKVEDQGEYICRASNDRS 475
V+L C A P Y+WT LP+ +N P + G YIC A+N
Sbjct: 250 VKLTCKADANPPATEYHWTTLNGSLPKGVEAQNRTLFFKGP-INYSLAGTYICEATNPIG 308
Query: 476 ALESSVTISI 485
V ++I
Sbjct: 309 TRSGQVEVNI 318
>pdb|1CDI|A Chain A, Structures Of An Hiv And Mhc Binding Fragment From Human
Cd4 As Refined In Two Crystal Lattices
Length = 179
Score = 30.0 bits (66), Expect = 7.4, Method: Composition-based stats.
Identities = 30/122 (24%), Positives = 46/122 (37%), Gaps = 29/122 (23%)
Query: 412 KAGDKVRLECVAFGYPVPSYNWTR---------RGSPL------------PRNAYFENFN 450
K GD V L C A ++W +GS L R + ++ N
Sbjct: 8 KKGDTVELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQGN 67
Query: 451 RILTIPNVKVEDQGEYICRASNDRSALESSVTISIQAEPNFTIPLTDKHMDNQADLTWTC 510
L I N+K+ED YIC + + ++ V + A +D H+ LT T
Sbjct: 68 FPLIIKNLKIEDSDTYICEVEDQKEEVQLLV-FGLTAN-------SDTHLLQGQSLTLTL 119
Query: 511 EA 512
E+
Sbjct: 120 ES 121
>pdb|1JL4|D Chain D, Crystal Structure Of The Human Cd4 N-Terminal Two Domain
Fragment Complexed To A Class Ii Mhc Molecule
pdb|1CDH|A Chain A, Structures Of An Hiv And Mhc Binding Fragment From Human
Cd4 As Refined In Two Crystal Lattices
pdb|1CDJ|A Chain A, Structure Of T-Cell Surface Glycoprotein Cd4
Length = 178
Score = 30.0 bits (66), Expect = 7.4, Method: Composition-based stats.
Identities = 30/122 (24%), Positives = 46/122 (37%), Gaps = 29/122 (23%)
Query: 412 KAGDKVRLECVAFGYPVPSYNWTR---------RGSPL------------PRNAYFENFN 450
K GD V L C A ++W +GS L R + ++ N
Sbjct: 7 KKGDTVELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQGN 66
Query: 451 RILTIPNVKVEDQGEYICRASNDRSALESSVTISIQAEPNFTIPLTDKHMDNQADLTWTC 510
L I N+K+ED YIC + + ++ V + A +D H+ LT T
Sbjct: 67 FPLIIKNLKIEDSDTYICEVEDQKEEVQLLV-FGLTAN-------SDTHLLQGQSLTLTL 118
Query: 511 EA 512
E+
Sbjct: 119 ES 120
>pdb|3O2D|A Chain A, Crystal Structure Of Hiv-1 Primary Receptor Cd4 In Complex
With A Potent Antiviral Antibody
Length = 188
Score = 30.0 bits (66), Expect = 7.4, Method: Composition-based stats.
Identities = 30/122 (24%), Positives = 46/122 (37%), Gaps = 29/122 (23%)
Query: 412 KAGDKVRLECVAFGYPVPSYNWTR---------RGSPL------------PRNAYFENFN 450
K GD V L C A ++W +GS L R + ++ N
Sbjct: 7 KKGDTVELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQGN 66
Query: 451 RILTIPNVKVEDQGEYICRASNDRSALESSVTISIQAEPNFTIPLTDKHMDNQADLTWTC 510
L I N+K+ED YIC + + ++ V + A +D H+ LT T
Sbjct: 67 FPLIIKNLKIEDSDTYICEVEDQKEEVQLLV-FGLTAN-------SDTHLLQGQSLTLTL 118
Query: 511 EA 512
E+
Sbjct: 119 ES 120
>pdb|3CD4|A Chain A, Refinement And Analysis Of The First Two Domains Of Human
Cd4
Length = 182
Score = 30.0 bits (66), Expect = 7.4, Method: Composition-based stats.
Identities = 30/122 (24%), Positives = 46/122 (37%), Gaps = 29/122 (23%)
Query: 412 KAGDKVRLECVAFGYPVPSYNWTR---------RGSPL------------PRNAYFENFN 450
K GD V L C A ++W +GS L R + ++ N
Sbjct: 7 KKGDTVELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQGN 66
Query: 451 RILTIPNVKVEDQGEYICRASNDRSALESSVTISIQAEPNFTIPLTDKHMDNQADLTWTC 510
L I N+K+ED YIC + + ++ V + A +D H+ LT T
Sbjct: 67 FPLIIKNLKIEDSDTYICEVEDQKEEVQLLV-FGLTAN-------SDTHLLQGQSLTLTL 118
Query: 511 EA 512
E+
Sbjct: 119 ES 120
>pdb|3LQA|C Chain C, Crystal Structure Of Clade C Gp120 In Complex With Scd4
And
Length = 192
Score = 29.6 bits (65), Expect = 7.6, Method: Composition-based stats.
Identities = 30/122 (24%), Positives = 46/122 (37%), Gaps = 29/122 (23%)
Query: 412 KAGDKVRLECVAFGYPVPSYNWTR---------RGSPL------------PRNAYFENFN 450
K GD V L C A ++W +GS L R + ++ N
Sbjct: 7 KKGDTVELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQGN 66
Query: 451 RILTIPNVKVEDQGEYICRASNDRSALESSVTISIQAEPNFTIPLTDKHMDNQADLTWTC 510
L I N+K+ED YIC + + ++ V + A +D H+ LT T
Sbjct: 67 FPLIIKNLKIEDSDTYICEVEDQKEEVQLLV-FGLTAN-------SDTHLLQGQSLTLTL 118
Query: 511 EA 512
E+
Sbjct: 119 ES 120
>pdb|2NXY|B Chain B, Hiv-1 Gp120 Envelope Glycoprotein(S334a) Complexed With
Cd4 And Antibody 17b
pdb|2NXZ|B Chain B, Hiv-1 Gp120 Envelope Glycoprotein (t257s, S334a, S375w)
Complexed With Cd4 And Antibody 17b
pdb|2NY0|B Chain B, Hiv-1 Gp120 Envelope Glycoprotein (M95w, W96c, T257s,
V275c, S334a, S375w, A433m) Complexed With Cd4 And
Antibody 17b
pdb|2NY1|B Chain B, Hiv-1 Gp120 Envelope Glycoprotein (I109c, T257s, S334a,
S375w, Q428c) Complexed With Cd4 And Antibody 17b
pdb|2NY2|B Chain B, Hiv-1 Gp120 Envelope Glycoprotein (T123c, T257s, S334a,
S375w, G431c) Complexed With Cd4 And Antibody 17b
pdb|2NY3|B Chain B, Hiv-1 Gp120 Envelope Glycoprotein (K231c, T257s, E267c,
S334a, S375w) Complexed With Cd4 And Antibody 17b
pdb|2NY4|B Chain B, Hiv-1 Gp120 Envelope Glycoprotein (K231c, T257s, E268c,
S334a, S375w) Complexed With Cd4 And Antibody 17b
pdb|2NY5|C Chain C, Hiv-1 Gp120 Envelope Glycoprotein (m95w, W96c, I109c,
T257s, V275c, S334a, S375w, Q428c, A433m) Complexed With
Cd4 And Antibody 17b
pdb|2NY6|B Chain B, Hiv-1 Gp120 Envelope Glycoprotein (m95w, W96c, I109c,
T123c, T257s, V275c,s334a, S375w, Q428c, G431c)
Complexed With Cd4 And Antibody 17b
pdb|3JWD|C Chain C, Structure Of Hiv-1 Gp120 With Gp41-Interactive Region:
Layered Architecture And Basis Of Conformational
Mobility
pdb|3JWD|D Chain D, Structure Of Hiv-1 Gp120 With Gp41-Interactive Region:
Layered Architecture And Basis Of Conformational
Mobility
pdb|3JWO|C Chain C, Structure Of Hiv-1 Gp120 With Gp41-Interactive Region:
Layered Architecture And Basis Of Conformational
Mobility
Length = 184
Score = 29.6 bits (65), Expect = 7.6, Method: Composition-based stats.
Identities = 30/122 (24%), Positives = 46/122 (37%), Gaps = 29/122 (23%)
Query: 412 KAGDKVRLECVAFGYPVPSYNWTR---------RGSPL------------PRNAYFENFN 450
K GD V L C A ++W +GS L R + ++ N
Sbjct: 8 KKGDTVELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQGN 67
Query: 451 RILTIPNVKVEDQGEYICRASNDRSALESSVTISIQAEPNFTIPLTDKHMDNQADLTWTC 510
L I N+K+ED YIC + + ++ V + A +D H+ LT T
Sbjct: 68 FPLIIKNLKIEDSDTYICEVEDQKEEVQLLV-FGLTAN-------SDTHLLQGQSLTLTL 119
Query: 511 EA 512
E+
Sbjct: 120 ES 121
>pdb|2BPD|A Chain A, Structure Of Murine Dectin-1
pdb|2BPD|B Chain B, Structure Of Murine Dectin-1
Length = 142
Score = 29.6 bits (65), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 27/99 (27%), Positives = 39/99 (39%), Gaps = 23/99 (23%)
Query: 29 CPQHWVQYRDSCYRFVKSPLKTRNDAKLNCKSLDSDLANVNDADEHGFIMYQL------- 81
C +W+ + SCY F S + +K +C L + L ++++ E FI Q
Sbjct: 17 CLPNWIMHGKSCYLFSFSG-NSWYGSKRHCSQLGAHLLKIDNSKEFEFIESQTSSHRINA 75
Query: 82 FWQDPQRRKWYFGGTQQSPNLWVNEDGTNLNELDAAFLP 120
FW R QS W EDG+ AF P
Sbjct: 76 FWIGLSRN--------QSEGPWFWEDGS-------AFFP 99
>pdb|2B4C|C Chain C, Crystal Structure Of Hiv-1 Jr-fl Gp120 Core Protein
Containing The Third Variable Region (v3) Complexed With
Cd4 And The X5 Antibody
pdb|2QAD|B Chain B, Structure Of Tyrosine-Sulfated 412d Antibody Complexed
With Hiv-1 Yu2 Gp120 And Cd4
pdb|2QAD|F Chain F, Structure Of Tyrosine-Sulfated 412d Antibody Complexed
With Hiv-1 Yu2 Gp120 And Cd4
Length = 181
Score = 29.6 bits (65), Expect = 7.9, Method: Composition-based stats.
Identities = 30/122 (24%), Positives = 46/122 (37%), Gaps = 29/122 (23%)
Query: 412 KAGDKVRLECVAFGYPVPSYNWTR---------RGSPL------------PRNAYFENFN 450
K GD V L C A ++W +GS L R + ++ N
Sbjct: 7 KKGDTVELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQGN 66
Query: 451 RILTIPNVKVEDQGEYICRASNDRSALESSVTISIQAEPNFTIPLTDKHMDNQADLTWTC 510
L I N+K+ED YIC + + ++ V + A +D H+ LT T
Sbjct: 67 FPLIIKNLKIEDSDTYICEVEDQKEEVQLLV-FGLTAN-------SDTHLLQGQSLTLTL 118
Query: 511 EA 512
E+
Sbjct: 119 ES 120
>pdb|1DCL|A Chain A, Mcg, A Lambda V Type Light-Chain Dimer (Bence-Jones
Protein), Crystallized From Ammonium Sulfate
pdb|1DCL|B Chain B, Mcg, A Lambda V Type Light-Chain Dimer (Bence-Jones
Protein), Crystallized From Ammonium Sulfate
Length = 216
Score = 29.6 bits (65), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 28/134 (20%), Positives = 58/134 (43%), Gaps = 16/134 (11%)
Query: 453 LTIPNVKVEDQGEYICRA--SNDRSALESSVTISI----QAEPNFTI--PLTDKHMDNQA 504
LT+ ++ ED+ +Y C + +D + +++ +A P T+ P +++ N+A
Sbjct: 75 LTVSGLQAEDEADYYCSSYEGSDNFVFGTGTKVTVLGQPKANPTVTLFPPSSEELQANKA 134
Query: 505 DLTWTCEAFGVPDVTYSWFRNGELLNS---ETLPLEDQDRYFIQDNVLTIRYLNPE--RD 559
L F VT +W +G + + T P + + + + L+ L PE +
Sbjct: 135 TLVCLISDFYPGAVTVAWKADGSPVKAGVETTKPSKQSNNKYAASSYLS---LTPEQWKS 191
Query: 560 PAMYQCRAKNQLKT 573
Y C+ ++ T
Sbjct: 192 HRSYSCQVTHEGST 205
>pdb|3U82|B Chain B, Binding Of Herpes Simplex Virus Glycoprotein D To Nectin-1
Exploits Host Cell Adhesion
Length = 317
Score = 29.6 bits (65), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 28/70 (40%), Gaps = 2/70 (2%)
Query: 417 VRLECVAFGYP-VPSYNWTRRGSPLPRNAYFENFNRILTIPNVKVEDQGEYICRASNDRS 475
V+L C A P Y+WT LP+ +N P + G YIC A+N
Sbjct: 236 VKLTCKADANPPATEYHWTTLNGSLPKGVEAQNRTLFFKGP-INYSLAGTYICEATNPIG 294
Query: 476 ALESSVTISI 485
V ++I
Sbjct: 295 TRSGQVEVNI 304
>pdb|1MCB|A Chain A, Principles And Pitfalls In Designing Site Directed Peptide
Ligands
pdb|1MCB|B Chain B, Principles And Pitfalls In Designing Site Directed Peptide
Ligands
pdb|1MCC|A Chain A, Principles And Pitfalls In Designing Site Directed Peptide
Ligands
pdb|1MCC|B Chain B, Principles And Pitfalls In Designing Site Directed Peptide
Ligands
pdb|1MCD|A Chain A, Principles And Pitfalls In Designing Site Directed Peptide
Ligands
pdb|1MCD|B Chain B, Principles And Pitfalls In Designing Site Directed Peptide
Ligands
pdb|1MCE|A Chain A, Principles And Pitfalls In Designing Site Directed Peptide
Ligands
pdb|1MCE|B Chain B, Principles And Pitfalls In Designing Site Directed Peptide
Ligands
pdb|1MCF|A Chain A, Principles And Pitfalls In Designing Site Directed Peptide
Ligands
pdb|1MCF|B Chain B, Principles And Pitfalls In Designing Site Directed Peptide
Ligands
pdb|1MCH|A Chain A, Principles And Pitfalls In Designing Site Directed Peptide
Ligands
pdb|1MCH|B Chain B, Principles And Pitfalls In Designing Site Directed Peptide
Ligands
pdb|1MCI|A Chain A, Principles And Pitfalls In Designing Site Directed Peptide
Ligands
pdb|1MCI|B Chain B, Principles And Pitfalls In Designing Site Directed Peptide
Ligands
pdb|1MCJ|A Chain A, Principles And Pitfalls In Designing Site Directed Peptide
Ligands
pdb|1MCJ|B Chain B, Principles And Pitfalls In Designing Site Directed Peptide
Ligands
pdb|1MCK|A Chain A, Principles And Pitfalls In Designing Site Directed Peptide
Ligands
pdb|1MCK|B Chain B, Principles And Pitfalls In Designing Site Directed Peptide
Ligands
pdb|1MCL|A Chain A, Principles And Pitfalls In Designing Site Directed Peptide
Ligands
pdb|1MCL|B Chain B, Principles And Pitfalls In Designing Site Directed Peptide
Ligands
pdb|1MCN|A Chain A, Principles And Pitfalls In Designing Site Directed Peptide
Ligands
pdb|1MCN|B Chain B, Principles And Pitfalls In Designing Site Directed Peptide
Ligands
pdb|1MCQ|A Chain A, Principles And Pitfalls In Designing Site Directed Peptide
Ligands
pdb|1MCQ|B Chain B, Principles And Pitfalls In Designing Site Directed Peptide
Ligands
pdb|1MCR|A Chain A, Principles And Pitfalls In Designing Site Directed Peptide
Ligands
pdb|1MCR|B Chain B, Principles And Pitfalls In Designing Site Directed Peptide
Ligands
pdb|1MCS|A Chain A, Principles And Pitfalls In Designing Site Directed Peptide
Ligands
pdb|1MCS|B Chain B, Principles And Pitfalls In Designing Site Directed Peptide
Ligands
Length = 216
Score = 29.6 bits (65), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 28/134 (20%), Positives = 58/134 (43%), Gaps = 16/134 (11%)
Query: 453 LTIPNVKVEDQGEYICRA--SNDRSALESSVTISI----QAEPNFTI--PLTDKHMDNQA 504
LT+ ++ ED+ +Y C + +D + +++ +A P T+ P +++ N+A
Sbjct: 75 LTVSGLQAEDEADYYCSSYEGSDNFVFGTGTKVTVLGQPKANPTVTLFPPSSEELQANKA 134
Query: 505 DLTWTCEAFGVPDVTYSWFRNGELLNS---ETLPLEDQDRYFIQDNVLTIRYLNPE--RD 559
L F VT +W +G + + T P + + + + L+ L PE +
Sbjct: 135 TLVCLISDFYPGAVTVAWKADGSPVKAGVETTKPSKQSNNKYAASSYLS---LTPEQWKS 191
Query: 560 PAMYQCRAKNQLKT 573
Y C+ ++ T
Sbjct: 192 HRSYSCQVTHEGST 205
>pdb|1MCW|M Chain M, Three-Dimensional Structure Of A Hybrid Light Chain Dimer.
Protein Engineering Of A Binding Cavity
pdb|2MCG|1 Chain 1, Three-Dimensional Structure Of A Light Chain Dimer
Crystallized In Water. Conformational Flexibility Of A
Molecule In Two Crystal Forms
pdb|2MCG|2 Chain 2, Three-Dimensional Structure Of A Light Chain Dimer
Crystallized In Water. Conformational Flexibility Of A
Molecule In Two Crystal Forms
pdb|3MCG|1 Chain 1, Three-Dimensional Structure Of A Light Chain Dimer
Crystallized In Water. Conformational Flexibility Of A
Molecule In Two Crystal Forms
pdb|3MCG|2 Chain 2, Three-Dimensional Structure Of A Light Chain Dimer
Crystallized In Water. Conformational Flexibility Of A
Molecule In Two Crystal Forms
pdb|1A8J|L Chain L, Immunoglobulin Lambda Light Chain Dimer (Mcg) Complex With
Aspartame
pdb|1A8J|H Chain H, Immunoglobulin Lambda Light Chain Dimer (Mcg) Complex With
Aspartame
Length = 216
Score = 29.6 bits (65), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 28/134 (20%), Positives = 58/134 (43%), Gaps = 16/134 (11%)
Query: 453 LTIPNVKVEDQGEYICRA--SNDRSALESSVTISI----QAEPNFTI--PLTDKHMDNQA 504
LT+ ++ ED+ +Y C + +D + +++ +A P T+ P +++ N+A
Sbjct: 75 LTVSGLQAEDEADYYCSSYEGSDNFVFGTGTKVTVLGQPKANPTVTLFPPSSEELQANKA 134
Query: 505 DLTWTCEAFGVPDVTYSWFRNGELLNS---ETLPLEDQDRYFIQDNVLTIRYLNPE--RD 559
L F VT +W +G + + T P + + + + L+ L PE +
Sbjct: 135 TLVCLISDFYPGAVTVAWKADGSPVKAGVETTKPSKQSNNKYAASSYLS---LTPEQWKS 191
Query: 560 PAMYQCRAKNQLKT 573
Y C+ ++ T
Sbjct: 192 HRSYSCQVTHEGST 205
>pdb|4HPO|L Chain L, Crystal Structure Of Rv144-elicited Antibody Ch58 In
Complex With V2 Peptide
pdb|4HQQ|L Chain L, Crystal Structure Of Rv144-elicited Antibody Ch58
Length = 216
Score = 29.6 bits (65), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 30/133 (22%), Positives = 59/133 (44%), Gaps = 15/133 (11%)
Query: 453 LTIPNVKVEDQGEYICRASNDRS-----ALESSVTISIQAEPNFTI--PLTDKHMDNQAD 505
LTI +K ED+ +Y C++ ++ S + +V +A P+ T+ P +++ N+A
Sbjct: 76 LTISGLKTEDEADYYCQSYDNSSWVFGGGTKLTVLGQPKAAPSVTLFPPSSEELQANKAT 135
Query: 506 LTWTCEAFGVPDVTYSWFRNGELLNS---ETLPLEDQDRYFIQDNVLTIRYLNPE--RDP 560
L F VT +W + + + T P + + + + L+ L PE +
Sbjct: 136 LVCLISDFYPGAVTVAWKADSSPVKAGVETTTPSKQSNNKYAASSYLS---LTPEQWKSH 192
Query: 561 AMYQCRAKNQLKT 573
Y C+ ++ T
Sbjct: 193 RSYSCQVTHEGST 205
>pdb|1GC1|C Chain C, Hiv-1 Gp120 Core Complexed With Cd4 And A Neutralizing
Human Antibody
pdb|1G9M|C Chain C, Hiv-1 Hxbc2 Gp120 Envelope Glycoprotein Complexed With Cd4
And Induced Neutralizing Antibody 17b
pdb|1G9N|C Chain C, Hiv-1 Yu2 Gp120 Envelope Glycoprotein Complexed With Cd4
And Induced Neutralizing Antibody 17b
pdb|1RZJ|C Chain C, Hiv-1 Hxbc2 Gp120 Envelope Glycoprotein Complexed With Cd4
And Induced Neutralizing Antibody 17b
pdb|1RZK|C Chain C, Hiv-1 Yu2 Gp120 Envelope Glycoprotein Complexed With Cd4
And Induced Neutralizing Antibody 17b
Length = 185
Score = 29.6 bits (65), Expect = 8.6, Method: Composition-based stats.
Identities = 30/122 (24%), Positives = 46/122 (37%), Gaps = 29/122 (23%)
Query: 412 KAGDKVRLECVAFGYPVPSYNWTR---------RGSPL------------PRNAYFENFN 450
K GD V L C A ++W +GS L R + ++ N
Sbjct: 7 KKGDTVELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQGN 66
Query: 451 RILTIPNVKVEDQGEYICRASNDRSALESSVTISIQAEPNFTIPLTDKHMDNQADLTWTC 510
L I N+K+ED YIC + + ++ V + A +D H+ LT T
Sbjct: 67 FPLIIKNLKIEDSDTYICEVEDQKEEVQLLV-FGLTAN-------SDTHLLQGQSLTLTL 118
Query: 511 EA 512
E+
Sbjct: 119 ES 120
>pdb|3JZ7|A Chain A, Crystal Structure Of The Extracellular Domains Of
Coxsackie & Adenovirus Receptor From Mouse (Mcar)
Length = 214
Score = 29.6 bits (65), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 32/121 (26%), Positives = 52/121 (42%), Gaps = 7/121 (5%)
Query: 559 DPAMYQCRAKNQLKTRYSSAQLRVLTLKPSFKKRPLESETYAGEGGNVTIFCNPEAAPKP 618
D YQC+ K L VL +KPS + ++ G + + C P+ P
Sbjct: 95 DIGTYQCKVKKAPGVANKKFLLTVL-VKPSGTRCFVDGSEEIG--NDFKLKCEPKEGSLP 151
Query: 619 -KFVWKK--DGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTATNVHGMDESKGRLIV 675
+F W+K D + + ++ + + + S + SG YSCT N G D+ RL V
Sbjct: 152 LQFEWQKLSDSQTMPTPWLAEM-TSPVISVKNASSEYSGTYSCTVQNRVGSDQCMLRLDV 210
Query: 676 L 676
+
Sbjct: 211 V 211
>pdb|4G6F|L Chain L, Crystal Structure Of 10e8 Fab In Complex With An Hiv-1
Gp41 Peptide
pdb|4G6F|D Chain D, Crystal Structure Of 10e8 Fab In Complex With An Hiv-1
Gp41 Peptide
Length = 215
Score = 29.6 bits (65), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 35/137 (25%), Positives = 58/137 (42%), Gaps = 20/137 (14%)
Query: 453 LTIPNVKVEDQGEYICRASNDRSALESSV-------TISIQ--AEPNFTI--PLTDKHMD 501
LTI + ED EY C +S D+S SV T+ Q A P+ T+ P +++
Sbjct: 72 LTISGAQAEDDAEYYC-SSRDKSGSRLSVFGGGTKLTVLSQPKAAPSVTLFPPSSEELQA 130
Query: 502 NQADLTWTCEAFGVPDVTYSWFRNGELLNS---ETLPLEDQDRYFIQDNVLTIRYLNPE- 557
N+A L F VT +W + + + T P + + + + L+ L PE
Sbjct: 131 NKATLVCLISDFYPGAVTVAWKADSSPVKAGVETTTPSKQSNNKYAASSYLS---LTPEQ 187
Query: 558 -RDPAMYQCRAKNQLKT 573
+ Y C+ ++ T
Sbjct: 188 WKSHRSYSCQVTHEGST 204
>pdb|1Q9O|A Chain A, S45-18 Fab Unliganded
pdb|1Q9O|C Chain C, S45-18 Fab Unliganded
pdb|1Q9W|A Chain A, S45-18 Fab Pentasaccharide Bisphosphate Complex
pdb|1Q9W|C Chain C, S45-18 Fab Pentasaccharide Bisphosphate Complex
Length = 219
Score = 29.6 bits (65), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 32/131 (24%), Positives = 54/131 (41%), Gaps = 12/131 (9%)
Query: 453 LTIPNVKVEDQGEYICRASNDRSALESSVTISIQ---AEPNFTI--PLTDKHMDNQADLT 507
LTI +V+ ED Y C+ S + + I+ A P +I P +++ A +
Sbjct: 79 LTISSVQAEDLAVYYCKQSYNLRTFGGGTKLEIKRADAAPTVSIFPPSSEQLTSGGASVV 138
Query: 508 WTCEAFGVPDVTYSWFRNGE-----LLNSETLPLEDQDRYFIQDNVLTIRYLNPERDPAM 562
F D+ W +G +LNS T + +D + + LT+ ER +
Sbjct: 139 CFLNNFYPKDINVKWKIDGSERQNGVLNSWT-DQDSKDSTYSMSSTLTLTKDEYERHNS- 196
Query: 563 YQCRAKNQLKT 573
Y C A ++ T
Sbjct: 197 YTCEATHKTST 207
>pdb|3OZ9|L Chain L, Crystal Structure Of Anti-Gp41 Fab Nc-1
Length = 211
Score = 29.3 bits (64), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 32/131 (24%), Positives = 53/131 (40%), Gaps = 12/131 (9%)
Query: 453 LTIPNVKVEDQGEYICRASNDRSALESSVTISIQ---AEPNFTI--PLTDKHMDNQADLT 507
LTI +V+ ED +Y C + + IQ A P +I P +++ A +
Sbjct: 72 LTISSVEAEDAADYYCHQWSGFYTFGGGTKLEIQRADAAPTVSIFPPSSEQLTSGGASVV 131
Query: 508 WTCEAFGVPDVTYSWFRNGE-----LLNSETLPLEDQDRYFIQDNVLTIRYLNPERDPAM 562
F D+ W +G +LNS T + +D + + LT+ ER +
Sbjct: 132 CFLNNFYPKDINVKWKIDGSERQNGVLNSWT-DQDSKDSTYSMSSTLTLTKDEYERHNS- 189
Query: 563 YQCRAKNQLKT 573
Y C A ++ T
Sbjct: 190 YTCEATHKTST 200
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.136 0.421
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 32,141,604
Number of Sequences: 62578
Number of extensions: 1492263
Number of successful extensions: 5699
Number of sequences better than 100.0: 346
Number of HSP's better than 100.0 without gapping: 78
Number of HSP's successfully gapped in prelim test: 268
Number of HSP's that attempted gapping in prelim test: 4471
Number of HSP's gapped (non-prelim): 936
length of query: 978
length of database: 14,973,337
effective HSP length: 108
effective length of query: 870
effective length of database: 8,214,913
effective search space: 7146974310
effective search space used: 7146974310
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 56 (26.2 bits)