Query psy12060
Match_columns 978
No_of_seqs 629 out of 5822
Neff 10.9
Searched_HMMs 46136
Date Fri Aug 16 17:38:00 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy12060.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/12060hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3513|consensus 100.0 2E-104 5E-109 873.5 80.1 761 190-978 40-809 (1051)
2 KOG3513|consensus 100.0 8.4E-76 1.8E-80 647.4 68.4 771 141-977 97-907 (1051)
3 KOG4221|consensus 100.0 2.6E-67 5.7E-72 573.8 50.6 631 306-978 50-705 (1381)
4 KOG4221|consensus 100.0 2.4E-66 5.2E-71 566.3 56.3 727 190-976 42-804 (1381)
5 KOG4222|consensus 100.0 8.1E-63 1.8E-67 535.7 43.6 748 188-978 30-838 (1281)
6 KOG4222|consensus 100.0 1.3E-55 2.9E-60 479.6 36.2 630 300-972 36-726 (1281)
7 KOG3515|consensus 100.0 3.7E-31 8E-36 286.7 33.9 685 205-931 18-734 (741)
8 KOG4194|consensus 100.0 3.3E-29 7.2E-34 256.0 21.8 285 189-491 503-801 (873)
9 KOG4194|consensus 100.0 1.2E-28 2.5E-33 252.1 24.1 286 411-705 515-825 (873)
10 PHA02785 IL-beta-binding prote 100.0 8.2E-27 1.8E-31 243.6 27.0 246 208-477 40-318 (326)
11 PHA02785 IL-beta-binding prote 100.0 6E-26 1.3E-30 237.1 28.8 245 410-668 37-319 (326)
12 KOG3515|consensus 99.9 8.5E-23 1.8E-27 222.2 28.5 634 141-820 60-733 (741)
13 TIGR00864 PCC polycystin catio 99.9 1.1E-18 2.4E-23 212.5 63.6 128 25-160 314-447 (2740)
14 cd03599 CLECT_DGCR2_like C-typ 99.9 7.8E-23 1.7E-27 183.2 12.2 130 29-159 1-153 (153)
15 PHA02642 C-type lectin-like pr 99.9 3.8E-22 8.3E-27 184.6 15.6 123 21-161 80-202 (216)
16 cd03597 CLECT_attractin_like C 99.9 1.7E-22 3.6E-27 180.1 12.4 125 29-159 1-129 (129)
17 cd03588 CLECT_CSPGs C-type lec 99.9 6.1E-22 1.3E-26 176.4 12.5 120 29-159 1-123 (124)
18 cd03590 CLECT_DC-SIGN_like C-t 99.9 3.7E-21 7.9E-26 173.6 14.0 123 29-159 1-126 (126)
19 cd03589 CLECT_CEL-1_like C-typ 99.9 3.1E-21 6.8E-26 176.7 12.4 127 29-159 1-137 (137)
20 cd03594 CLECT_REG-1_like C-typ 99.9 4.4E-21 9.5E-26 173.6 13.0 126 29-159 1-129 (129)
21 cd03593 CLECT_NK_receptors_lik 99.8 7.6E-21 1.6E-25 168.4 12.8 116 29-159 1-116 (116)
22 PHA02953 IEV and EEV membrane 99.8 2.8E-20 6.1E-25 169.5 12.8 119 26-160 44-167 (170)
23 PHA03097 C-type lectin-like pr 99.8 6.7E-20 1.5E-24 166.1 14.5 117 22-160 39-155 (157)
24 cd03596 CLECT_tetranectin_like 99.8 5.8E-20 1.3E-24 165.1 12.0 123 29-158 1-128 (129)
25 cd03598 CLECT_EMBP_like C-type 99.8 1.2E-18 2.6E-23 153.3 12.5 114 38-159 1-117 (117)
26 PHA02867 C-type lectin protein 99.8 1.1E-18 2.5E-23 155.5 12.1 115 21-160 41-155 (167)
27 PHA02826 IL-1 receptor-like pr 99.8 5.7E-18 1.2E-22 164.8 17.0 151 409-573 32-213 (227)
28 cd03591 CLECT_collectin_like C 99.8 2.6E-18 5.7E-23 150.5 11.2 112 38-159 1-114 (114)
29 cd03603 CLECT_VCBS A bacterial 99.8 5E-18 1.1E-22 148.9 12.1 113 39-158 1-117 (118)
30 PHA02826 IL-1 receptor-like pr 99.8 4.5E-17 9.8E-22 158.5 19.0 160 495-664 29-211 (227)
31 smart00034 CLECT C-type lectin 99.8 5.3E-18 1.2E-22 153.8 11.2 125 29-158 1-126 (126)
32 KOG0196|consensus 99.7 4.7E-17 1E-21 173.7 18.6 197 773-978 327-529 (996)
33 cd03601 CLECT_TC14_like C-type 99.7 1.5E-17 3.3E-22 146.3 12.1 113 40-159 2-119 (119)
34 cd03592 CLECT_selectins_like C 99.7 3.4E-17 7.5E-22 144.0 10.5 112 41-159 3-115 (115)
35 cd03595 CLECT_chondrolectin_li 99.7 4.9E-17 1.1E-21 149.2 11.5 125 28-158 3-148 (149)
36 cd03602 CLECT_1 C-type lectin 99.7 8.2E-17 1.8E-21 139.7 10.6 108 39-159 1-108 (108)
37 cd03600 CLECT_thrombomodulin_l 99.7 1.7E-16 3.6E-21 145.0 12.7 122 36-159 2-139 (141)
38 cd05850 Ig1_Contactin-2 First 99.6 4.8E-15 1E-19 123.8 12.9 93 189-291 1-93 (94)
39 cd05849 Ig1_Contactin-1 First 99.6 8.8E-15 1.9E-19 121.3 12.0 92 189-291 1-92 (93)
40 cd05848 Ig1_Contactin-5 First 99.6 1.2E-14 2.5E-19 121.3 12.2 92 189-290 1-92 (94)
41 cd05851 Ig3_Contactin-1 Third 99.5 6.5E-14 1.4E-18 115.2 9.8 78 409-486 11-88 (88)
42 cd05762 Ig8_MLCK Eighth immuno 99.5 2.2E-13 4.7E-18 114.4 12.3 85 596-680 8-95 (98)
43 cd05852 Ig5_Contactin-1 Fifth 99.5 1E-13 2.2E-18 108.8 9.3 73 603-675 1-73 (73)
44 cd05762 Ig8_MLCK Eighth immuno 99.5 1.2E-13 2.5E-18 116.1 9.9 81 409-489 10-94 (98)
45 cd05852 Ig5_Contactin-1 Fifth 99.5 1.3E-13 2.8E-18 108.2 9.2 72 414-485 1-73 (73)
46 cd05745 Ig3_Peroxidasin Third 99.5 1.4E-13 3E-18 109.5 9.2 74 602-675 1-74 (74)
47 cd05851 Ig3_Contactin-1 Third 99.5 1.9E-13 4.1E-18 112.5 10.0 87 488-582 1-87 (88)
48 cd04967 Ig1_Contactin First Ig 99.5 4.3E-13 9.3E-18 111.8 11.6 90 189-288 1-90 (91)
49 cd05745 Ig3_Peroxidasin Third 99.5 2E-13 4.2E-18 108.6 8.8 73 413-485 1-74 (74)
50 cd05863 Ig2_VEGFR-3 Second imm 99.5 3.6E-13 7.7E-18 102.6 9.0 66 417-486 1-66 (67)
51 PHA02911 C-type lectin-like pr 99.5 1.9E-13 4.2E-18 121.1 8.1 110 26-160 100-210 (213)
52 cd05867 Ig4_L1-CAM_like Fourth 99.5 7.1E-13 1.5E-17 106.1 10.7 72 414-485 1-75 (76)
53 cd04975 Ig4_SCFR_like Fourth i 99.4 4.4E-13 9.5E-18 112.4 9.3 78 409-486 13-100 (101)
54 cd05728 Ig4_Contactin-2-like F 99.4 6.6E-13 1.4E-17 108.8 9.9 77 409-485 9-85 (85)
55 cd05868 Ig4_NrCAM Fourth immun 99.4 1.1E-12 2.3E-17 104.6 10.3 73 414-486 1-76 (76)
56 cd00037 CLECT C-type lectin (C 99.4 8.5E-13 1.8E-17 117.5 10.9 115 39-159 1-116 (116)
57 cd05892 Ig_Myotilin_C C-termin 99.4 7.9E-13 1.7E-17 104.0 9.3 69 417-485 1-75 (75)
58 cd05723 Ig4_Neogenin Fourth im 99.4 1.1E-12 2.5E-17 103.0 10.0 71 605-675 1-71 (71)
59 cd04976 Ig2_VEGFR Second immun 99.4 9.7E-13 2.1E-17 103.1 9.5 70 417-486 1-70 (71)
60 cd05892 Ig_Myotilin_C C-termin 99.4 1E-12 2.2E-17 103.4 9.3 70 606-675 1-75 (75)
61 cd04975 Ig4_SCFR_like Fourth i 99.4 1.3E-12 2.9E-17 109.5 10.4 81 596-676 11-100 (101)
62 cd05730 Ig3_NCAM-1_like Third 99.4 2.4E-12 5.3E-17 108.6 12.1 90 587-676 2-93 (95)
63 cd05739 Ig3_RPTP_IIa_LAR_like 99.4 1.4E-12 3E-17 101.2 9.6 68 414-483 1-68 (69)
64 cd05893 Ig_Palladin_C C-termin 99.4 1E-12 2.2E-17 103.7 8.9 69 417-485 1-75 (75)
65 TIGR00864 PCC polycystin catio 99.4 4.9E-07 1.1E-11 113.0 61.4 521 266-870 1480-2031(2740)
66 cd05894 Ig_C5_MyBP-C C5 immuno 99.4 1.8E-12 3.9E-17 105.9 10.1 76 410-485 6-86 (86)
67 cd05735 Ig8_DSCAM Eight immuno 99.4 1.9E-12 4.1E-17 106.4 10.3 76 414-489 1-85 (88)
68 cd05859 Ig4_PDGFR-alpha Fourth 99.4 1.2E-12 2.6E-17 110.1 9.2 78 409-486 13-100 (101)
69 cd05740 Ig_CEACAM_D4 Fourth im 99.4 2.2E-12 4.8E-17 106.4 10.4 75 207-292 16-90 (91)
70 cd04969 Ig5_Contactin_like Fif 99.4 1.8E-12 3.8E-17 102.9 9.5 73 603-675 1-73 (73)
71 cd07693 Ig1_Robo First immunog 99.4 2.5E-12 5.5E-17 110.5 11.1 95 189-292 1-99 (100)
72 cd04968 Ig3_Contactin_like Thi 99.4 2.9E-12 6.4E-17 106.1 11.0 77 410-486 12-88 (88)
73 cd04978 Ig4_L1-NrCAM_like Four 99.4 2.3E-12 4.9E-17 103.7 10.0 72 414-485 1-75 (76)
74 cd05723 Ig4_Neogenin Fourth im 99.4 2.1E-12 4.5E-17 101.5 9.5 70 416-485 1-71 (71)
75 cd05727 Ig2_Contactin-2-like S 99.4 1.8E-12 3.9E-17 105.5 9.2 79 302-380 10-89 (96)
76 cd05737 Ig_Myomesin_like_C C-t 99.4 1.8E-12 3.8E-17 108.2 9.4 76 410-485 12-92 (92)
77 cd05854 Ig6_Contactin-2 Sixth 99.4 2.6E-12 5.6E-17 104.7 10.1 75 415-489 1-85 (85)
78 cd05864 Ig2_VEGFR-2 Second imm 99.4 2.4E-12 5.2E-17 99.6 9.2 68 417-485 1-68 (70)
79 cd05893 Ig_Palladin_C C-termin 99.4 2.1E-12 4.5E-17 101.9 8.9 70 606-675 1-75 (75)
80 cd05749 Ig2_Tyro3_like Second 99.4 2.2E-12 4.7E-17 103.1 9.1 79 192-290 1-80 (81)
81 cd05735 Ig8_DSCAM Eight immuno 99.4 3.8E-12 8.1E-17 104.7 10.5 78 603-680 1-86 (88)
82 cd05728 Ig4_Contactin-2-like F 99.4 4E-12 8.7E-17 104.1 10.6 83 492-582 3-85 (85)
83 cd04969 Ig5_Contactin_like Fif 99.4 3.1E-12 6.6E-17 101.5 9.5 72 414-485 1-73 (73)
84 cd05722 Ig1_Neogenin First imm 99.4 4.2E-12 9.1E-17 106.9 10.8 88 192-292 2-95 (95)
85 cd05737 Ig_Myomesin_like_C C-t 99.4 5.2E-12 1.1E-16 105.4 10.9 80 596-675 9-92 (92)
86 cd05725 Ig3_Robo Third immunog 99.4 2.8E-12 6.1E-17 100.5 8.7 69 417-485 1-69 (69)
87 cd05876 Ig3_L1-CAM Third immun 99.4 3.6E-12 7.8E-17 100.2 9.3 69 417-485 1-70 (71)
88 cd05867 Ig4_L1-CAM_like Fourth 99.4 5.8E-12 1.3E-16 100.8 10.7 73 603-675 1-75 (76)
89 cd05894 Ig_C5_MyBP-C C5 immuno 99.4 8E-12 1.7E-16 102.1 11.6 79 597-675 4-86 (86)
90 cd05854 Ig6_Contactin-2 Sixth 99.4 3.9E-12 8.4E-17 103.6 9.7 84 695-778 1-85 (85)
91 cd05853 Ig6_Contactin-4 Sixth 99.4 4.6E-12 1E-16 101.4 9.5 80 695-778 1-85 (85)
92 cd05730 Ig3_NCAM-1_like Third 99.4 5.8E-12 1.3E-16 106.2 10.6 78 410-487 14-94 (95)
93 cd05868 Ig4_NrCAM Fourth immun 99.4 5.6E-12 1.2E-16 100.5 9.9 73 603-675 1-75 (76)
94 PF00059 Lectin_C: Lectin C-ty 99.4 4.8E-12 1E-16 110.1 10.4 102 48-159 2-105 (105)
95 cd05738 Ig2_RPTP_IIa_LAR_like 99.3 4.2E-12 9.1E-17 100.8 9.0 72 212-292 1-73 (74)
96 cd05857 Ig2_FGFR Second immuno 99.3 5.1E-12 1.1E-16 104.2 9.8 76 410-485 5-85 (85)
97 cd05746 Ig4_Peroxidasin Fourth 99.3 3.2E-12 6.8E-17 99.9 8.0 68 606-673 1-68 (69)
98 cd05853 Ig6_Contactin-4 Sixth 99.3 5.4E-12 1.2E-16 101.0 9.4 76 604-679 1-85 (85)
99 cd04973 Ig1_FGFR First immunog 99.3 5.3E-12 1.1E-16 101.6 9.4 75 410-485 5-79 (79)
100 cd05744 Ig_Myotilin_C_like Imm 99.3 6.3E-12 1.4E-16 99.8 9.4 69 417-485 1-75 (75)
101 cd04972 Ig_TrkABC_d4 Fourth do 99.3 7.7E-12 1.7E-16 104.0 10.2 76 410-485 11-90 (90)
102 cd05747 Ig5_Titin_like M5, fif 99.3 1.3E-11 2.8E-16 103.1 11.5 86 586-673 3-91 (92)
103 cd05865 Ig1_NCAM-1 First immun 99.3 8.4E-12 1.8E-16 103.8 10.2 76 410-485 11-95 (96)
104 cd05855 Ig_TrkB_d5 Fifth domai 99.3 6.9E-12 1.5E-16 98.8 9.0 66 419-484 3-77 (79)
105 cd05863 Ig2_VEGFR-3 Second imm 99.3 6.9E-12 1.5E-16 95.5 8.5 65 606-675 1-65 (67)
106 cd05746 Ig4_Peroxidasin Fourth 99.3 5.5E-12 1.2E-16 98.6 8.3 67 417-483 1-68 (69)
107 cd04970 Ig6_Contactin_like Six 99.3 7E-12 1.5E-16 103.0 9.3 75 415-489 1-85 (85)
108 cd05748 Ig_Titin_like Immunogl 99.3 1.1E-11 2.4E-16 98.7 10.1 70 416-485 1-74 (74)
109 cd05859 Ig4_PDGFR-alpha Fourth 99.3 1.3E-11 2.8E-16 103.8 10.7 80 597-676 12-100 (101)
110 cd05865 Ig1_NCAM-1 First immun 99.3 1.1E-11 2.3E-16 103.2 10.0 77 599-675 11-95 (96)
111 cd05876 Ig3_L1-CAM Third immun 99.3 6.7E-12 1.5E-16 98.6 8.4 70 606-675 1-70 (71)
112 cd05760 Ig2_PTK7 Second immuno 99.3 8.8E-12 1.9E-16 99.7 9.2 73 212-292 1-74 (77)
113 cd05732 Ig5_NCAM-1_like Fifth 99.3 1.1E-11 2.4E-16 105.0 10.2 77 409-485 11-96 (96)
114 cd05874 Ig6_NrCAM Sixth immuno 99.3 8.7E-12 1.9E-16 99.3 8.9 72 212-290 1-76 (77)
115 cd05760 Ig2_PTK7 Second immuno 99.3 1.1E-11 2.4E-16 99.1 9.5 70 417-486 1-75 (77)
116 cd05744 Ig_Myotilin_C_like Imm 99.3 1.3E-11 2.8E-16 98.0 9.6 70 606-675 1-75 (75)
117 cd05733 Ig6_L1-CAM_like Sixth 99.3 6.8E-12 1.5E-16 100.4 8.0 71 212-290 1-76 (77)
118 cd05875 Ig6_hNeurofascin_like 99.3 1.2E-11 2.5E-16 98.6 9.2 71 212-290 1-76 (77)
119 cd04978 Ig4_L1-NrCAM_like Four 99.3 1.3E-11 2.7E-16 99.4 9.5 73 603-675 1-75 (76)
120 cd07702 Ig2_VEGFR-1 Second imm 99.3 1.2E-11 2.5E-16 95.7 8.8 67 417-483 1-68 (72)
121 cd05740 Ig_CEACAM_D4 Fourth im 99.3 2.2E-11 4.7E-16 100.6 10.8 81 593-675 8-90 (91)
122 cd04968 Ig3_Contactin_like Thi 99.3 2.1E-11 4.6E-16 101.0 10.8 86 489-582 2-87 (88)
123 cd05771 IgC_Tapasin_R Tapasin- 99.3 3.7E-11 8E-16 109.4 13.2 119 452-571 2-131 (139)
124 cd05773 Ig8_hNephrin_like Eigh 99.3 3.4E-11 7.3E-16 103.5 12.0 95 585-679 3-108 (109)
125 cd05726 Ig4_Robo Fhird immunog 99.3 1.6E-11 3.5E-16 102.0 9.7 75 414-488 1-84 (90)
126 cd05724 Ig2_Robo Second immuno 99.3 2.4E-11 5.2E-16 100.6 10.4 75 208-292 10-86 (86)
127 cd05856 Ig2_FGFRL1-like Second 99.3 1.8E-11 3.9E-16 100.4 9.5 74 412-485 7-82 (82)
128 cd05747 Ig5_Titin_like M5, fif 99.3 2.7E-11 5.9E-16 101.2 10.6 85 488-580 3-91 (92)
129 PF00041 fn3: Fibronectin type 99.3 7.5E-12 1.6E-16 103.7 7.2 83 888-976 2-85 (85)
130 cd05743 Ig_Perlecan_D2_like Im 99.3 2.1E-11 4.6E-16 98.0 9.4 72 414-485 1-76 (78)
131 cd05869 Ig5_NCAM-1 Fifth immun 99.3 2E-11 4.3E-16 103.1 9.7 74 412-485 15-97 (97)
132 cd05764 Ig_2 Subgroup of the i 99.3 2.7E-11 5.7E-16 96.7 9.8 73 603-675 1-74 (74)
133 cd05726 Ig4_Robo Fhird immunog 99.3 2.4E-11 5.3E-16 101.0 9.9 76 603-678 1-84 (90)
134 cd04971 Ig_TrKABC_d5 Fifth dom 99.3 2.5E-11 5.3E-16 97.4 9.5 66 419-484 3-79 (81)
135 cd05891 Ig_M-protein_C C-termi 99.3 2.6E-11 5.6E-16 100.8 9.9 77 409-485 11-92 (92)
136 cd05870 Ig5_NCAM-2 Fifth immun 99.3 1.2E-11 2.6E-16 104.6 8.0 77 409-485 11-98 (98)
137 cd05748 Ig_Titin_like Immunogl 99.3 3.3E-11 7.2E-16 96.0 10.1 71 605-675 1-74 (74)
138 cd05731 Ig3_L1-CAM_like Third 99.3 2E-11 4.3E-16 96.7 8.8 69 417-485 1-70 (71)
139 cd04976 Ig2_VEGFR Second immun 99.3 2.4E-11 5.2E-16 95.2 8.9 69 606-675 1-69 (71)
140 cd05864 Ig2_VEGFR-2 Second imm 99.3 2.1E-11 4.7E-16 94.3 8.3 68 606-675 1-68 (70)
141 cd04972 Ig_TrkABC_d4 Fourth do 99.3 3.3E-11 7.2E-16 100.1 10.1 78 598-675 10-90 (90)
142 cd04970 Ig6_Contactin_like Six 99.3 2.3E-11 5E-16 99.9 9.0 76 604-679 1-85 (85)
143 cd05743 Ig_Perlecan_D2_like Im 99.3 3.5E-11 7.6E-16 96.7 9.6 73 603-675 1-76 (78)
144 cd05850 Ig1_Contactin-2 First 99.3 8.2E-11 1.8E-15 98.2 12.1 83 489-576 2-87 (94)
145 PF07679 I-set: Immunoglobulin 99.3 4.8E-11 1E-15 99.9 10.7 80 596-675 8-90 (90)
146 cd05866 Ig1_NCAM-2 First immun 99.3 5.6E-11 1.2E-15 97.7 10.7 81 195-292 6-91 (92)
147 cd05725 Ig3_Robo Third immunog 99.3 2.8E-11 6E-16 94.8 8.6 69 606-675 1-69 (69)
148 cd05891 Ig_M-protein_C C-termi 99.3 6.4E-11 1.4E-15 98.4 11.1 80 596-675 9-92 (92)
149 cd05857 Ig2_FGFR Second immuno 99.2 5.1E-11 1.1E-15 98.2 10.4 77 599-675 5-85 (85)
150 cd05866 Ig1_NCAM-2 First immun 99.2 6E-11 1.3E-15 97.5 10.6 78 597-675 9-91 (92)
151 cd05848 Ig1_Contactin-5 First 99.2 8E-11 1.7E-15 98.2 11.5 83 489-576 2-87 (94)
152 cd05756 Ig1_IL1R_like First im 99.2 2.2E-11 4.8E-16 101.0 7.9 76 410-485 10-94 (94)
153 cd05869 Ig5_NCAM-1 Fifth immun 99.2 7.3E-11 1.6E-15 99.6 11.3 92 488-582 2-97 (97)
154 cd05764 Ig_2 Subgroup of the i 99.2 3.4E-11 7.4E-16 96.0 8.7 72 414-485 1-74 (74)
155 cd05738 Ig2_RPTP_IIa_LAR_like 99.2 3.8E-11 8.3E-16 95.3 8.9 70 606-675 1-73 (74)
156 cd05739 Ig3_RPTP_IIa_LAR_like 99.2 5.7E-11 1.2E-15 92.2 9.6 68 603-673 1-68 (69)
157 cd05763 Ig_1 Subgroup of the i 99.2 3.5E-11 7.6E-16 96.1 8.7 69 417-485 1-74 (75)
158 cd05734 Ig7_DSCAM Seventh immu 99.2 2.4E-11 5.2E-16 98.1 7.7 78 212-292 1-79 (79)
159 cd05855 Ig_TrkB_d5 Fifth domai 99.2 3.7E-11 8E-16 94.7 8.4 67 608-674 3-77 (79)
160 cd05773 Ig8_hNephrin_like Eigh 99.2 4.7E-11 1E-15 102.6 9.8 77 413-489 22-108 (109)
161 cd04974 Ig3_FGFR Third immunog 99.2 2.9E-11 6.3E-16 100.2 8.2 73 414-486 1-90 (90)
162 cd04973 Ig1_FGFR First immunog 99.2 6E-11 1.3E-15 95.5 9.7 76 598-675 4-79 (79)
163 cd05849 Ig1_Contactin-1 First 99.2 1.2E-10 2.7E-15 96.5 10.9 82 489-576 2-86 (93)
164 cd05749 Ig2_Tyro3_like Second 99.2 7.5E-11 1.6E-15 94.2 9.0 71 409-483 8-80 (81)
165 cd05731 Ig3_L1-CAM_like Third 99.2 5.5E-11 1.2E-15 94.1 8.2 70 606-675 1-70 (71)
166 cd05724 Ig2_Robo Second immuno 99.2 1.4E-10 3.1E-15 95.9 10.7 78 596-673 4-84 (86)
167 cd05870 Ig5_NCAM-2 Fifth immun 99.2 1.1E-10 2.5E-15 98.7 10.3 91 488-582 2-98 (98)
168 cd05752 Ig1_FcgammaR_like Frst 99.2 5.9E-11 1.3E-15 94.3 7.8 77 190-292 1-78 (78)
169 cd07702 Ig2_VEGFR-1 Second imm 99.2 9.1E-11 2E-15 90.8 8.5 66 606-671 1-66 (72)
170 cd07693 Ig1_Robo First immunog 99.2 1.7E-10 3.7E-15 99.0 11.0 87 587-675 2-99 (100)
171 PF07679 I-set: Immunoglobulin 99.2 9.4E-11 2E-15 98.1 9.0 86 489-582 1-90 (90)
172 cd05858 Ig3_FGFR-2 Third immun 99.2 9.4E-11 2E-15 97.3 8.8 72 414-485 1-89 (90)
173 cd04971 Ig_TrKABC_d5 Fifth dom 99.2 1.3E-10 2.7E-15 93.3 9.1 67 608-674 3-79 (81)
174 cd05765 Ig_3 Subgroup of the i 99.2 1.5E-10 3.2E-15 94.5 9.4 79 209-292 1-81 (81)
175 cd05736 Ig2_Follistatin_like S 99.2 1.8E-10 3.9E-15 92.4 9.5 70 417-486 1-74 (76)
176 cd05845 Ig2_L1-CAM_like Second 99.2 1.2E-10 2.7E-15 94.6 8.3 74 302-376 10-84 (95)
177 cd05722 Ig1_Neogenin First imm 99.2 2.2E-10 4.8E-15 96.4 10.1 78 597-674 8-94 (95)
178 cd05763 Ig_1 Subgroup of the i 99.2 1.8E-10 3.8E-15 92.0 8.8 70 606-675 1-74 (75)
179 cd05765 Ig_3 Subgroup of the i 99.2 1.8E-10 3.9E-15 94.0 9.0 72 414-485 1-81 (81)
180 cd04974 Ig3_FGFR Third immunog 99.1 1.8E-10 3.9E-15 95.5 9.0 73 603-675 1-89 (90)
181 cd04977 Ig1_NCAM-1_like First 99.1 3.3E-10 7.1E-15 94.1 10.5 82 194-291 5-91 (92)
182 cd05750 Ig_Pro_neuregulin Immu 99.1 1.3E-10 2.9E-15 93.1 7.8 66 417-482 1-74 (75)
183 cd05742 Ig1_VEGFR_like First i 99.1 2.3E-10 5E-15 93.7 9.2 72 414-485 1-83 (84)
184 cd05771 IgC_Tapasin_R Tapasin- 99.1 2.6E-10 5.6E-15 103.8 10.5 116 257-374 2-131 (139)
185 cd05732 Ig5_NCAM-1_like Fifth 99.1 2.4E-10 5.2E-15 96.8 9.4 91 488-582 2-96 (96)
186 cd05758 Ig5_KIRREL3-like Fifth 99.1 2.5E-10 5.3E-15 96.6 9.3 74 410-483 12-97 (98)
187 cd05858 Ig3_FGFR-2 Third immun 99.1 2.6E-10 5.7E-15 94.7 9.2 73 603-675 1-89 (90)
188 cd05856 Ig2_FGFRL1-like Second 99.1 2.2E-10 4.7E-15 94.0 8.5 77 599-675 5-82 (82)
189 cd05734 Ig7_DSCAM Seventh immu 99.1 2.9E-10 6.3E-15 91.8 8.8 69 417-485 1-79 (79)
190 cd05861 Ig1_PDGFR-alphabeta Fr 99.1 7.2E-10 1.6E-14 90.2 10.7 73 414-486 1-83 (84)
191 cd05758 Ig5_KIRREL3-like Fifth 99.1 5.8E-10 1.3E-14 94.3 10.5 87 488-580 2-97 (98)
192 cd05756 Ig1_IL1R_like First im 99.1 3E-10 6.6E-15 94.2 8.4 78 598-675 9-94 (94)
193 cd04977 Ig1_NCAM-1_like First 99.1 6.4E-10 1.4E-14 92.4 9.8 77 597-674 9-91 (92)
194 cd05736 Ig2_Follistatin_like S 99.1 7.3E-10 1.6E-14 88.8 9.7 71 606-676 1-74 (76)
195 cd05733 Ig6_L1-CAM_like Sixth 99.1 4.7E-10 1E-14 89.7 8.1 63 417-479 1-71 (77)
196 cd05873 Ig_Sema4D_like Immunog 99.1 6.2E-10 1.3E-14 89.5 8.2 65 409-474 6-71 (87)
197 cd05874 Ig6_NrCAM Sixth immuno 99.1 7.2E-10 1.6E-14 88.3 8.6 63 417-479 1-71 (77)
198 cd04979 Ig_Semaphorin_C Immuno 99.1 1.1E-09 2.3E-14 90.9 9.8 78 208-293 10-87 (89)
199 PF00041 fn3: Fibronectin type 99.1 6.3E-10 1.4E-14 92.1 8.3 84 779-872 1-85 (85)
200 cd05753 Ig2_FcgammaR_like Seco 99.1 5.2E-10 1.1E-14 90.6 7.5 71 207-292 12-83 (83)
201 cd04967 Ig1_Contactin First Ig 99.0 2.2E-09 4.7E-14 89.4 11.4 83 489-576 2-87 (91)
202 cd05861 Ig1_PDGFR-alphabeta Fr 99.0 1.2E-09 2.5E-14 88.9 9.4 81 209-292 1-82 (84)
203 cd05895 Ig_Pro_neuregulin-1 Im 99.0 9E-10 1.9E-14 88.2 7.8 66 417-482 1-75 (76)
204 cd05750 Ig_Pro_neuregulin Immu 99.0 7.7E-10 1.7E-14 88.7 7.4 67 606-672 1-74 (75)
205 cd05754 Ig3_Perlecan_like Thir 99.0 1.3E-09 2.8E-14 89.6 8.9 72 410-483 12-84 (85)
206 cd05882 Ig1_Necl-1 First (N-te 99.0 1.4E-09 3E-14 90.1 9.0 76 408-484 6-94 (95)
207 cd05757 Ig2_IL1R_like Second i 99.0 8.2E-10 1.8E-14 90.8 7.6 77 409-485 5-86 (92)
208 cd05873 Ig_Sema4D_like Immunog 99.0 2.7E-09 5.8E-14 85.9 10.3 68 596-664 4-71 (87)
209 cd05752 Ig1_FcgammaR_like Frst 99.0 9.6E-10 2.1E-14 87.3 7.7 67 489-570 1-68 (78)
210 cd05875 Ig6_hNeurofascin_like 99.0 2E-09 4.4E-14 85.7 9.5 65 606-670 1-72 (77)
211 cd05729 Ig2_FGFR_like Second i 99.0 2.2E-09 4.7E-14 88.8 9.2 75 411-485 6-85 (85)
212 cd07701 Ig1_Necl-3 First (N-te 99.0 2.7E-09 5.8E-14 89.0 8.8 77 408-485 6-95 (95)
213 cd04979 Ig_Semaphorin_C Immuno 99.0 2.9E-09 6.4E-14 88.3 8.8 77 410-487 7-88 (89)
214 cd05742 Ig1_VEGFR_like First i 99.0 2.8E-09 6E-14 87.3 8.5 73 603-675 1-83 (84)
215 cd05885 Ig2_Necl-4 Second immu 99.0 3.5E-09 7.5E-14 83.0 8.5 66 212-282 2-68 (80)
216 cd05753 Ig2_FcgammaR_like Seco 98.9 2.2E-09 4.8E-14 86.9 6.2 71 410-484 10-82 (83)
217 PF13895 Ig_2: Immunoglobulin 98.9 1.1E-08 2.5E-13 83.3 10.4 79 190-292 2-80 (80)
218 cd05754 Ig3_Perlecan_like Thir 98.9 6.7E-09 1.5E-13 85.3 8.7 74 597-673 10-84 (85)
219 PF05473 Herpes_UL45: UL45 pro 98.9 4.1E-09 8.8E-14 99.4 8.3 101 25-160 81-181 (200)
220 smart00408 IGc2 Immunoglobulin 98.9 6.7E-09 1.4E-13 80.1 8.0 63 413-475 1-63 (63)
221 cd05757 Ig2_IL1R_like Second i 98.9 8.3E-09 1.8E-13 84.9 8.8 76 599-675 6-86 (92)
222 cd05729 Ig2_FGFR_like Second i 98.9 1.8E-08 3.9E-13 83.2 10.7 77 599-675 5-85 (85)
223 cd05871 Ig_Semaphorin_classIII 98.9 9.9E-09 2.2E-13 84.5 8.9 76 411-487 8-90 (91)
224 cd05885 Ig2_Necl-4 Second immu 98.9 4.7E-09 1E-13 82.2 6.4 74 313-386 2-78 (80)
225 cd05895 Ig_Pro_neuregulin-1 Im 98.9 5.4E-09 1.2E-13 83.7 6.9 67 606-672 1-75 (76)
226 cd05898 Ig5_KIRREL3 Fifth immu 98.9 1.4E-08 3.1E-13 83.7 9.4 75 409-483 11-97 (98)
227 cd05862 Ig1_VEGFR First immuno 98.9 1.3E-08 2.8E-13 83.1 9.0 74 414-487 1-86 (86)
228 cd05898 Ig5_KIRREL3 Fifth immu 98.9 2.4E-08 5.2E-13 82.4 10.5 78 596-673 9-97 (98)
229 KOG0196|consensus 98.9 1.5E-07 3.2E-12 102.5 18.9 133 738-883 396-537 (996)
230 cd05871 Ig_Semaphorin_classIII 98.8 2.4E-08 5.3E-13 82.2 10.1 79 208-293 10-89 (91)
231 cd07701 Ig1_Necl-3 First (N-te 98.8 1.9E-08 4.1E-13 83.8 9.5 80 595-675 4-95 (95)
232 cd05727 Ig2_Contactin-2-like S 98.8 9.3E-09 2E-13 83.9 7.1 70 598-667 13-86 (96)
233 cd05882 Ig1_Necl-1 First (N-te 98.8 3.1E-08 6.6E-13 82.1 10.3 78 596-674 5-94 (95)
234 smart00408 IGc2 Immunoglobulin 98.8 4.2E-08 9.1E-13 75.5 8.5 63 602-665 1-63 (63)
235 cd05845 Ig2_L1-CAM_like Second 98.8 1.9E-08 4.1E-13 81.9 6.5 70 596-665 11-83 (95)
236 cd05751 Ig1_LILRB1_like First 98.7 4.8E-08 1E-12 81.0 8.2 87 189-292 2-90 (91)
237 cd05717 Ig1_Necl-1-3_like Firs 98.7 7.1E-08 1.5E-12 81.1 9.2 76 409-485 7-95 (95)
238 KOG4258|consensus 98.7 3.2E-08 6.9E-13 107.7 8.6 129 843-978 783-917 (1025)
239 PF13895 Ig_2: Immunoglobulin 98.7 3E-08 6.6E-13 80.8 6.3 70 410-485 10-80 (80)
240 cd05897 Ig2_IL1R2_like Second 98.7 3.7E-08 7.9E-13 80.6 6.7 69 409-477 5-81 (95)
241 cd05862 Ig1_VEGFR First immuno 98.7 1.1E-07 2.3E-12 77.7 9.3 82 694-775 1-85 (86)
242 cd05896 Ig1_IL1RAPL-1_like Fir 98.7 6.5E-08 1.4E-12 79.0 7.7 76 410-485 11-104 (104)
243 cd05860 Ig4_SCFR Fourth immuno 98.7 1.3E-07 2.8E-12 77.1 9.3 78 409-486 13-100 (101)
244 cd07690 Ig1_CD4 First immunogl 98.7 5.5E-08 1.2E-12 79.9 7.2 75 207-282 5-90 (94)
245 cd05872 Ig_Sema4B_like Immunog 98.7 6.9E-08 1.5E-12 77.0 7.1 74 409-484 6-79 (85)
246 PF00047 ig: Immunoglobulin do 98.7 4.8E-08 1E-12 75.2 6.0 57 414-470 1-64 (64)
247 cd05897 Ig2_IL1R2_like Second 98.6 5.3E-08 1.1E-12 79.7 6.1 70 305-375 5-79 (95)
248 cd07690 Ig1_CD4 First immunogl 98.6 6.9E-08 1.5E-12 79.3 6.7 67 411-477 4-91 (94)
249 PHA03376 BARF1; Provisional 98.6 3.8E-07 8.3E-12 81.0 10.8 118 409-526 21-162 (221)
250 KOG4802|consensus 98.6 4.4E-07 9.5E-12 90.3 12.3 182 778-974 145-341 (516)
251 cd05759 Ig2_KIRREL3-like Secon 98.6 1.7E-07 3.8E-12 76.2 8.1 78 212-291 2-81 (82)
252 cd05717 Ig1_Necl-1-3_like Firs 98.6 3E-07 6.4E-12 77.3 9.7 80 594-674 3-94 (95)
253 PF00047 ig: Immunoglobulin do 98.6 1.1E-07 2.3E-12 73.3 6.1 58 603-660 1-64 (64)
254 cd05860 Ig4_SCFR Fourth immuno 98.6 5.7E-07 1.2E-11 73.4 9.6 81 596-676 11-100 (101)
255 smart00409 IG Immunoglobulin. 98.5 1.1E-06 2.3E-11 72.7 11.7 78 598-675 4-85 (86)
256 smart00410 IG_like Immunoglobu 98.5 1.1E-06 2.3E-11 72.7 11.7 78 598-675 4-85 (86)
257 cd05896 Ig1_IL1RAPL-1_like Fir 98.5 5.9E-07 1.3E-11 73.4 9.2 83 498-581 10-103 (104)
258 smart00409 IG Immunoglobulin. 98.5 8.2E-07 1.8E-11 73.4 9.8 76 410-485 5-85 (86)
259 smart00410 IG_like Immunoglobu 98.5 8.2E-07 1.8E-11 73.4 9.8 76 410-485 5-85 (86)
260 PHA03376 BARF1; Provisional 98.5 2.6E-06 5.7E-11 75.9 12.5 118 207-335 24-163 (221)
261 cd00063 FN3 Fibronectin type 3 98.5 8.5E-07 1.8E-11 74.6 9.5 86 887-977 2-87 (93)
262 cd05881 Ig1_Necl-2 First (N-te 98.5 1.4E-06 3E-11 71.5 9.7 66 408-473 6-84 (95)
263 cd05883 Ig2_Necl-2 Second immu 98.5 1.8E-06 3.8E-11 68.1 9.7 79 212-294 2-81 (82)
264 cd05759 Ig2_KIRREL3-like Secon 98.5 7.7E-07 1.7E-11 72.3 8.1 70 416-485 1-82 (82)
265 cd05872 Ig_Sema4B_like Immunog 98.4 1.5E-06 3.2E-11 69.5 9.0 74 497-580 5-78 (85)
266 KOG0613|consensus 98.4 9.8E-06 2.1E-10 94.1 19.0 353 597-975 343-714 (1205)
267 cd05741 Ig_CEACAM_D1_like Firs 98.4 1.4E-06 3E-11 73.0 9.1 82 209-291 1-91 (92)
268 cd05751 Ig1_LILRB1_like First 98.4 5.1E-07 1.1E-11 74.8 6.3 81 304-388 10-90 (91)
269 cd05774 Ig_CEACAM_D1 First imm 98.4 3.5E-06 7.6E-11 71.0 10.0 84 207-291 11-104 (105)
270 KOG4258|consensus 98.3 2.7E-06 5.8E-11 93.2 11.0 142 783-930 493-653 (1025)
271 cd05774 Ig_CEACAM_D1 First imm 98.3 3.6E-06 7.9E-11 70.9 9.3 74 600-673 10-103 (105)
272 cd05881 Ig1_Necl-2 First (N-te 98.3 7.3E-06 1.6E-10 67.3 10.8 67 596-662 5-83 (95)
273 PF13927 Ig_3: Immunoglobulin 98.3 1.3E-06 2.8E-11 70.0 5.7 73 190-278 2-75 (75)
274 cd05900 Ig_Aggrecan Immunoglob 98.3 5.1E-06 1.1E-10 71.0 9.5 75 413-487 1-110 (112)
275 cd05883 Ig2_Necl-2 Second immu 98.3 5.4E-06 1.2E-10 65.3 8.6 71 417-487 2-81 (82)
276 cd00063 FN3 Fibronectin type 3 98.3 1.1E-05 2.5E-10 67.6 11.1 87 778-873 1-87 (93)
277 cd05877 Ig_LP_like Immunoglobu 98.2 7.6E-06 1.7E-10 70.5 9.9 75 413-487 1-104 (106)
278 cd05711 Ig_FcalphaRI Immunoglo 98.2 8E-06 1.7E-10 67.9 9.5 88 190-291 2-93 (94)
279 cd05714 Ig_CSPGs_LP Immunoglob 98.2 9.7E-06 2.1E-10 69.8 10.4 75 413-487 1-104 (106)
280 cd07705 Ig2_Necl-1 Second immu 98.2 8.2E-06 1.8E-10 65.8 8.5 67 212-281 2-70 (83)
281 cd05877 Ig_LP_like Immunoglobu 98.2 1.1E-05 2.5E-10 69.4 10.0 83 209-293 2-103 (106)
282 cd05761 Ig2_Necl-1-4_like Seco 98.2 7.9E-06 1.7E-10 66.0 8.4 68 212-282 2-70 (82)
283 cd05775 Ig_SLAM-CD84_like_N N- 98.2 5.6E-06 1.2E-10 69.4 7.4 84 208-292 3-96 (97)
284 cd05741 Ig_CEACAM_D1_like Firs 98.2 8.2E-06 1.8E-10 68.3 7.9 71 414-484 1-91 (92)
285 cd05900 Ig_Aggrecan Immunoglob 98.1 1.9E-05 4.1E-10 67.5 9.8 83 208-292 1-108 (112)
286 cd05714 Ig_CSPGs_LP Immunoglob 98.1 2E-05 4.4E-10 67.8 9.6 83 209-293 2-103 (106)
287 cd05878 Ig_Aggrecan_like Immun 98.1 2.1E-05 4.5E-10 67.7 9.6 74 414-487 2-108 (110)
288 cd05713 Ig_MOG_like Immunoglob 98.1 1.8E-05 3.9E-10 67.3 9.2 72 414-485 1-99 (100)
289 cd05718 Ig1_PVR_like First imm 98.1 2.3E-05 5E-10 66.4 9.7 81 210-292 1-97 (98)
290 cd05884 Ig2_Necl-3 Second immu 98.1 1.6E-05 3.4E-10 64.0 8.0 67 212-280 2-69 (83)
291 cd05718 Ig1_PVR_like First imm 98.1 2.2E-05 4.8E-10 66.5 9.3 71 415-485 1-97 (98)
292 PF13927 Ig_3: Immunoglobulin 98.1 3.3E-06 7.2E-11 67.6 3.9 59 312-372 17-75 (75)
293 cd05713 Ig_MOG_like Immunoglob 98.1 3.1E-05 6.7E-10 65.9 10.0 82 209-292 1-99 (100)
294 cd05775 Ig_SLAM-CD84_like_N N- 98.1 8.6E-06 1.9E-10 68.3 6.0 79 308-388 2-96 (97)
295 cd07705 Ig2_Necl-1 Second immu 98.0 1.2E-05 2.6E-10 64.9 6.6 64 313-377 2-72 (83)
296 cd05878 Ig_Aggrecan_like Immun 98.0 4.1E-05 8.8E-10 65.9 9.9 84 208-293 1-107 (110)
297 cd05711 Ig_FcalphaRI Immunoglo 98.0 2E-05 4.3E-10 65.5 7.6 62 410-472 11-76 (94)
298 cd04983 IgV_TCR_alpha_like Imm 98.0 5E-05 1.1E-09 65.9 10.3 73 207-280 11-93 (109)
299 cd00098 IgC Immunoglobulin Con 98.0 1.6E-05 3.4E-10 67.0 6.4 71 209-281 13-86 (95)
300 cd05761 Ig2_Necl-1-4_like Seco 98.0 1.4E-05 3.1E-10 64.6 5.8 64 313-377 2-71 (82)
301 cd07694 Ig2_CD4 Second immunog 98.0 5.5E-05 1.2E-09 59.3 8.6 75 410-486 10-86 (88)
302 cd05846 Ig1_MRC-OX-2_like Firs 98.0 5.4E-05 1.2E-09 63.7 9.4 82 209-292 1-96 (97)
303 cd04983 IgV_TCR_alpha_like Imm 98.0 2.6E-05 5.7E-10 67.7 7.8 66 409-474 8-93 (109)
304 cd05886 Ig1_Nectin-1_like Firs 97.9 0.00011 2.5E-09 61.1 10.5 71 416-486 2-99 (99)
305 smart00060 FN3 Fibronectin typ 97.9 4.5E-05 9.6E-10 62.1 8.1 78 888-973 3-83 (83)
306 cd05755 Ig2_ICAM-1_like Second 97.9 4.1E-05 8.9E-10 63.2 7.5 68 409-476 11-87 (100)
307 PHA02987 Ig domain OX-2-like p 97.9 5.1E-05 1.1E-09 68.8 8.6 80 410-489 26-125 (189)
308 cd05879 Ig_P0 Immunoglobulin ( 97.9 0.00011 2.4E-09 63.4 10.2 72 596-667 6-106 (116)
309 cd05755 Ig2_ICAM-1_like Second 97.9 7.5E-05 1.6E-09 61.7 8.5 71 207-282 14-87 (100)
310 cd05887 Ig1_Nectin-3_like Firs 97.9 0.00012 2.6E-09 60.4 9.7 71 415-485 1-95 (96)
311 cd05901 Ig_Versican Immunoglob 97.9 0.00016 3.4E-09 61.6 10.5 39 449-487 77-115 (117)
312 cd05884 Ig2_Necl-3 Second immu 97.9 3E-05 6.5E-10 62.4 6.0 65 313-377 2-72 (83)
313 cd05899 IgV_TCR_beta Immunoglo 97.9 5.6E-05 1.2E-09 65.5 8.1 65 409-474 8-95 (110)
314 cd05887 Ig1_Nectin-3_like Firs 97.9 0.00014 3E-09 60.0 9.8 80 211-292 2-95 (96)
315 cd05902 Ig_Neurocan Immunoglob 97.9 7.8E-05 1.7E-09 63.4 8.6 74 414-487 2-108 (110)
316 cd05879 Ig_P0 Immunoglobulin ( 97.9 0.00011 2.3E-09 63.5 9.3 75 496-573 6-105 (116)
317 cd00099 IgV Immunoglobulin var 97.8 4.9E-05 1.1E-09 65.5 7.3 65 411-475 3-91 (105)
318 cd04980 IgV_L_kappa Immunoglob 97.8 0.00012 2.5E-09 63.0 9.6 72 207-279 13-93 (106)
319 cd05899 IgV_TCR_beta Immunoglo 97.8 9.8E-05 2.1E-09 64.0 9.2 72 207-280 11-95 (110)
320 cd00099 IgV Immunoglobulin var 97.8 7.6E-05 1.6E-09 64.3 8.4 74 207-281 4-91 (105)
321 smart00060 FN3 Fibronectin typ 97.8 0.00014 3.1E-09 59.0 9.8 78 779-868 2-82 (83)
322 KOG1480|consensus 97.8 9.7E-06 2.1E-10 88.0 3.3 186 189-390 24-220 (909)
323 cd05902 Ig_Neurocan Immunoglob 97.8 0.00011 2.3E-09 62.6 8.7 83 209-293 2-107 (110)
324 cd05880 Ig_EVA1 Immunoglobulin 97.8 7.7E-05 1.7E-09 64.8 8.0 66 410-475 9-103 (115)
325 cd05886 Ig1_Nectin-1_like Firs 97.8 0.00022 4.7E-09 59.5 10.3 80 211-292 2-98 (99)
326 cd05846 Ig1_MRC-OX-2_like Firs 97.8 9.6E-05 2.1E-09 62.2 8.4 72 414-485 1-96 (97)
327 cd05888 Ig1_Nectin-4_like Frst 97.8 0.00015 3.2E-09 61.3 9.4 70 416-485 2-99 (100)
328 cd05888 Ig1_Nectin-4_like Frst 97.8 0.00024 5.3E-09 60.0 9.9 80 211-292 2-99 (100)
329 cd00098 IgC Immunoglobulin Con 97.8 9.6E-05 2.1E-09 62.2 7.4 72 501-573 11-87 (95)
330 PHA02987 Ig domain OX-2-like p 97.8 0.00016 3.5E-09 65.7 9.0 87 207-294 28-123 (189)
331 cd04984 IgV_L_lambda Immunoglo 97.7 0.00019 4E-09 60.7 9.1 72 207-279 4-85 (98)
332 cd05880 Ig_EVA1 Immunoglobulin 97.7 0.00031 6.8E-09 61.0 10.0 73 208-281 12-103 (115)
333 KOG4152|consensus 97.7 0.00011 2.3E-09 76.0 8.0 124 850-976 654-789 (830)
334 PHA03271 envelope glycoprotein 97.7 0.048 1E-06 55.8 26.0 202 548-760 208-429 (490)
335 PF07686 V-set: Immunoglobulin 97.7 0.00032 7E-09 61.5 10.0 85 207-292 14-114 (114)
336 PHA03273 envelope glycoprotein 97.7 0.017 3.6E-07 60.2 22.8 163 548-719 199-376 (486)
337 PHA03271 envelope glycoprotein 97.7 0.0057 1.2E-07 62.2 19.1 161 352-530 208-388 (490)
338 cd05901 Ig_Versican Immunoglob 97.6 0.00059 1.3E-08 58.1 10.4 83 209-293 2-114 (117)
339 cd04982 IgV_TCR_gamma Immunogl 97.6 0.00022 4.8E-09 62.5 8.2 71 207-278 11-98 (116)
340 cd05715 Ig_P0-like Immunoglobu 97.6 0.00046 1E-08 60.3 10.1 73 208-281 12-104 (116)
341 PHA03269 envelope glycoprotein 97.6 0.011 2.4E-07 61.5 20.7 197 257-472 290-512 (566)
342 cd04984 IgV_L_lambda Immunoglo 97.6 0.00018 3.9E-09 60.8 6.8 63 410-472 2-84 (98)
343 PHA03270 envelope glycoprotein 97.6 0.015 3.3E-07 59.8 21.0 168 546-723 181-362 (466)
344 cd05715 Ig_P0-like Immunoglobu 97.6 0.00034 7.5E-09 61.2 8.4 73 304-376 7-105 (116)
345 cd07694 Ig2_CD4 Second immunog 97.6 0.00073 1.6E-08 53.1 9.0 74 599-675 10-85 (88)
346 PHA03269 envelope glycoprotein 97.5 0.0034 7.4E-08 65.2 16.0 160 352-529 290-471 (566)
347 PHA03273 envelope glycoprotein 97.5 0.0065 1.4E-07 63.1 17.8 78 451-530 198-280 (486)
348 cd05772 IgC_SIRP Signal-regula 97.5 0.00082 1.8E-08 57.4 9.8 73 498-572 16-93 (111)
349 PF07686 V-set: Immunoglobulin 97.5 0.00034 7.3E-09 61.4 7.8 76 410-485 12-114 (114)
350 cd04980 IgV_L_kappa Immunoglob 97.5 0.00039 8.4E-09 59.7 7.4 67 597-663 9-93 (106)
351 PHA03270 envelope glycoprotein 97.5 0.0044 9.6E-08 63.6 15.7 161 351-530 182-362 (466)
352 PF08205 C2-set_2: CD80-like C 97.5 0.00037 8E-09 57.6 6.9 71 209-281 14-85 (89)
353 cd05772 IgC_SIRP Signal-regula 97.5 0.00082 1.8E-08 57.4 8.9 83 676-763 3-92 (111)
354 smart00407 IGc1 Immunoglobulin 97.4 0.00066 1.4E-08 53.7 7.7 67 212-280 2-71 (75)
355 cd04982 IgV_TCR_gamma Immunogl 97.4 0.00057 1.2E-08 59.9 7.9 67 596-662 6-98 (116)
356 cd07700 IgV_CD8_beta Immunoglo 97.4 0.00072 1.6E-08 58.1 8.0 71 207-278 4-93 (107)
357 cd05889 Ig1_DNAM-1_like First 97.4 0.00065 1.4E-08 56.1 7.3 63 311-373 1-82 (96)
358 cd05716 Ig_pIgR Immunoglobulin 97.4 0.00068 1.5E-08 57.3 7.5 73 207-280 5-87 (98)
359 cd00096 Ig Immunoglobulin doma 97.4 0.00083 1.8E-08 52.7 7.6 58 417-474 1-66 (74)
360 cd05716 Ig_pIgR Immunoglobulin 97.4 0.00029 6.2E-09 59.6 5.0 65 410-474 3-87 (98)
361 cd07699 IgC_L Immunoglobulin C 97.3 0.0008 1.7E-08 56.6 7.5 75 495-571 9-89 (100)
362 cd07706 IgV_TCR_delta Immunogl 97.3 0.0017 3.6E-08 56.9 9.9 71 207-278 12-93 (116)
363 cd05889 Ig1_DNAM-1_like First 97.3 0.0018 3.9E-08 53.5 9.2 71 211-282 2-86 (96)
364 cd05770 IgC_beta2m Class I maj 97.3 0.0021 4.5E-08 52.8 9.2 66 209-279 15-82 (93)
365 cd00096 Ig Immunoglobulin doma 97.3 0.00064 1.4E-08 53.3 6.2 66 212-280 1-66 (74)
366 cd05766 IgC_MHC_II_beta Class 97.2 0.0026 5.6E-08 52.7 9.3 68 208-280 13-83 (94)
367 cd05767 IgC_MHC_II_alpha Class 97.2 0.0023 5E-08 52.8 8.8 67 209-280 15-84 (94)
368 smart00407 IGc1 Immunoglobulin 97.2 0.0017 3.6E-08 51.4 7.7 66 505-571 1-71 (75)
369 cd05720 Ig_CD8_alpha Immunoglo 97.2 0.0011 2.3E-08 56.6 6.9 71 207-278 4-90 (104)
370 cd07691 Ig_CD3_gamma_delta Imm 97.2 0.00094 2E-08 49.3 5.4 61 413-487 5-65 (69)
371 PF08205 C2-set_2: CD80-like C 97.2 0.00073 1.6E-08 55.9 5.6 70 503-573 14-86 (89)
372 cd05769 IgC_TCR_beta T cell re 97.2 0.0026 5.6E-08 54.5 8.8 80 495-574 10-95 (115)
373 cd05847 IgC_CH2_IgE CH2 domain 97.2 0.0023 5E-08 52.9 8.2 76 496-573 7-88 (94)
374 cd05719 Ig2_PVR_like Second im 97.2 0.0028 6E-08 52.4 8.7 65 211-280 17-82 (95)
375 cd07698 IgC_MHC_I_alpha3 Class 97.1 0.0027 5.8E-08 52.8 8.4 66 503-572 14-84 (93)
376 cd05720 Ig_CD8_alpha Immunoglo 97.1 0.0016 3.5E-08 55.5 7.0 63 410-472 2-90 (104)
377 cd07700 IgV_CD8_beta Immunoglo 97.1 0.00077 1.7E-08 57.9 5.1 62 411-472 3-93 (107)
378 KOG4367|consensus 97.1 0.00048 1E-08 69.4 4.0 74 897-977 450-523 (699)
379 cd07703 Ig2_Nectin-2_like Seco 97.1 0.0031 6.7E-08 51.9 8.0 64 212-280 18-82 (95)
380 cd07706 IgV_TCR_delta Immunogl 97.1 0.0014 3E-08 57.4 6.4 72 302-373 6-94 (116)
381 cd05768 IgC_CH4 CH4 domain (fo 97.1 0.0026 5.7E-08 53.6 7.7 73 498-571 11-91 (102)
382 cd05766 IgC_MHC_II_beta Class 97.1 0.0041 8.9E-08 51.5 8.7 62 412-476 12-85 (94)
383 cd05767 IgC_MHC_II_alpha Class 97.0 0.0096 2.1E-07 49.1 10.0 66 501-571 13-84 (94)
384 cd07692 Ig_CD3_epsilon Immunog 96.9 0.0014 3.1E-08 48.2 4.2 51 413-473 6-56 (65)
385 cd07698 IgC_MHC_I_alpha3 Class 96.9 0.0046 1E-07 51.3 8.0 67 694-763 14-83 (93)
386 cd07696 IgC_CH3 CH3 domain (th 96.9 0.0033 7.2E-08 52.1 7.0 70 209-280 14-86 (96)
387 cd05768 IgC_CH4 CH4 domain (fo 96.9 0.0025 5.3E-08 53.7 6.1 35 690-724 12-46 (102)
388 KOG1480|consensus 96.9 0.00034 7.4E-09 76.5 1.0 178 488-669 24-211 (909)
389 cd04981 IgV_H Immunoglobulin ( 96.9 0.01 2.2E-07 51.8 10.0 71 207-278 10-97 (117)
390 PHA02673 ORF109 EEV glycoprote 96.8 0.0016 3.4E-08 56.6 4.6 52 26-81 74-125 (161)
391 cd05712 Ig_Siglec_N Immunoglob 96.8 0.0093 2E-07 52.3 9.7 72 207-279 12-102 (119)
392 cd07699 IgC_L Immunoglobulin C 96.8 0.0037 8E-08 52.6 6.8 71 690-763 13-89 (100)
393 PF01108 Tissue_fac: Tissue fa 96.8 0.0035 7.7E-08 53.6 6.7 85 884-974 20-106 (107)
394 cd07696 IgC_CH3 CH3 domain (th 96.8 0.0073 1.6E-07 50.1 7.9 78 494-572 5-87 (96)
395 cd07697 IgC_TCR_gamma T cell r 96.8 0.0091 2E-07 49.3 8.4 72 496-571 9-85 (96)
396 PRK14081 triple tyrosine motif 96.7 1.6 3.4E-05 49.6 45.5 425 359-828 153-624 (667)
397 PRK14081 triple tyrosine motif 96.7 1.6 3.5E-05 49.5 45.7 339 353-721 245-619 (667)
398 PF10179 DUF2369: Uncharacteri 96.7 0.84 1.8E-05 46.3 22.9 129 837-972 123-285 (300)
399 cd05770 IgC_beta2m Class I maj 96.7 0.01 2.2E-07 48.7 7.9 66 693-762 14-82 (93)
400 cd04981 IgV_H Immunoglobulin ( 96.6 0.0069 1.5E-07 52.8 7.2 64 409-472 7-97 (117)
401 PHA03093 EEV glycoprotein; Pro 96.6 0.0037 7.9E-08 56.0 5.1 51 26-81 98-148 (185)
402 cd05847 IgC_CH2_IgE CH2 domain 96.6 0.0079 1.7E-07 49.7 6.8 70 693-765 13-88 (94)
403 cd05719 Ig2_PVR_like Second im 96.6 0.013 2.9E-07 48.4 8.1 71 414-484 15-94 (95)
404 cd07697 IgC_TCR_gamma T cell r 96.5 0.0063 1.4E-07 50.3 5.9 34 691-724 13-46 (96)
405 smart00406 IGv Immunoglobulin 96.5 0.0064 1.4E-07 49.1 6.0 64 212-276 2-81 (81)
406 cd04986 IgC_CH2 CH2 domain (se 96.5 0.0093 2E-07 49.3 6.7 77 494-572 10-90 (99)
407 cd05769 IgC_TCR_beta T cell re 96.5 0.011 2.4E-07 50.7 7.5 74 690-765 14-94 (115)
408 cd07692 Ig_CD3_epsilon Immunog 96.5 0.006 1.3E-07 44.9 4.9 51 601-662 5-55 (65)
409 cd07704 Ig2_Nectin-3-4_like Se 96.5 0.0077 1.7E-07 49.4 6.1 68 305-375 11-85 (97)
410 PF09067 EpoR_lig-bind: Erythr 96.4 0.019 4.2E-07 48.0 8.1 84 885-972 7-95 (104)
411 cd07704 Ig2_Nectin-3-4_like Se 96.4 0.02 4.3E-07 47.0 8.0 67 209-280 16-84 (97)
412 cd05712 Ig_Siglec_N Immunoglob 96.4 0.016 3.5E-07 50.8 8.1 75 495-570 6-102 (119)
413 PHA02633 hypothetical protein; 96.3 0.01 2.3E-07 42.7 5.1 40 450-489 17-56 (63)
414 cd07689 Ig2_VCAM-1 Second immu 96.3 0.019 4.2E-07 46.6 7.4 64 410-474 11-86 (99)
415 cd07691 Ig_CD3_gamma_delta Imm 96.3 0.014 3.1E-07 43.3 6.0 50 602-662 5-54 (69)
416 PF07654 C1-set: Immunoglobuli 96.3 0.019 4E-07 46.5 7.5 63 601-666 6-79 (83)
417 cd04985 IgC_CH1 CH1 domain (fi 96.3 0.032 6.9E-07 46.2 8.9 67 502-571 15-87 (95)
418 KOG4367|consensus 96.3 0.0029 6.2E-08 64.0 3.0 82 789-882 450-531 (699)
419 cd07703 Ig2_Nectin-2_like Seco 96.3 0.015 3.2E-07 48.0 6.6 62 415-476 16-84 (95)
420 smart00406 IGv Immunoglobulin 96.3 0.0099 2.1E-07 48.0 5.7 55 416-470 1-81 (81)
421 PHA02672 ORF110 EEV glycoprote 96.2 0.0042 9.1E-08 52.9 3.3 69 25-98 46-114 (166)
422 cd04986 IgC_CH2 CH2 domain (se 96.2 0.012 2.6E-07 48.6 5.8 69 690-764 15-90 (99)
423 PF07654 C1-set: Immunoglobuli 96.0 0.013 2.9E-07 47.4 5.1 65 694-764 8-78 (83)
424 PF09294 Interfer-bind: Interf 95.9 0.0073 1.6E-07 51.8 3.5 84 887-977 4-99 (106)
425 KOG3632|consensus 95.7 0.056 1.2E-06 61.3 9.8 192 759-976 651-859 (1335)
426 COG4733 Phage-related protein, 95.7 0.092 2E-06 59.0 11.3 143 809-975 637-785 (952)
427 cd04985 IgC_CH1 CH1 domain (fi 95.2 0.12 2.7E-06 42.8 8.1 67 693-763 15-87 (95)
428 PF08204 V-set_CD47: CD47 immu 95.1 0.051 1.1E-06 47.0 5.7 83 691-774 24-119 (130)
429 cd05721 IgV_CTLA-4 Immunoglobu 95.1 0.15 3.2E-06 43.1 8.3 67 209-276 13-93 (115)
430 PF01108 Tissue_fac: Tissue fa 95.1 0.13 2.8E-06 44.0 8.2 84 775-867 19-103 (107)
431 PF08204 V-set_CD47: CD47 immu 95.1 0.028 6E-07 48.6 4.0 73 413-486 26-120 (130)
432 PHA02914 Immunoglobulin-like d 94.7 6 0.00013 40.9 30.3 121 597-724 273-423 (500)
433 cd07689 Ig2_VCAM-1 Second immu 94.7 0.094 2E-06 42.8 5.9 67 307-375 12-87 (99)
434 PHA02633 hypothetical protein; 94.7 0.1 2.2E-06 37.8 5.3 40 640-679 17-56 (63)
435 PF05966 Chordopox_A33R: Chord 94.4 0.018 4E-07 52.4 1.4 45 34-81 108-152 (190)
436 PF09067 EpoR_lig-bind: Erythr 94.4 0.15 3.4E-06 42.7 6.7 87 777-868 7-95 (104)
437 PF07354 Sp38: Zona-pellucida- 94.2 0.084 1.8E-06 51.1 5.4 50 324-374 11-60 (271)
438 PF07354 Sp38: Zona-pellucida- 93.9 0.078 1.7E-06 51.2 4.5 49 616-664 11-60 (271)
439 cd05721 IgV_CTLA-4 Immunoglobu 93.6 0.32 6.9E-06 41.2 7.1 73 687-759 6-93 (115)
440 PHA03042 CD47-like protein; Pr 93.3 0.23 5.1E-06 48.2 6.5 70 413-485 30-104 (286)
441 TIGR00868 hCaCC calcium-activa 93.3 17 0.00037 43.4 22.7 91 886-977 756-860 (863)
442 PF09294 Interfer-bind: Interf 93.2 0.17 3.6E-06 43.4 5.2 71 779-862 4-86 (106)
443 KOG0613|consensus 93.0 1.2 2.5E-05 53.6 12.9 211 744-974 106-318 (1205)
444 KOG4597|consensus 92.5 0.2 4.3E-06 52.4 5.2 82 596-677 204-293 (560)
445 PHA02982 hypothetical protein; 92.3 0.99 2.1E-05 41.9 8.7 115 410-530 35-175 (251)
446 COG3401 Fibronectin type 3 dom 92.3 5.5 0.00012 40.5 14.6 192 751-974 135-333 (343)
447 PHA03042 CD47-like protein; Pr 92.2 0.57 1.2E-05 45.7 7.5 68 503-581 31-103 (286)
448 PF10179 DUF2369: Uncharacteri 92.1 7.3 0.00016 39.7 15.6 144 711-869 107-286 (300)
449 KOG4597|consensus 91.8 0.29 6.2E-06 51.3 5.4 89 494-584 202-293 (560)
450 PHA02982 hypothetical protein; 91.7 1.2 2.6E-05 41.4 8.6 123 497-628 33-173 (251)
451 KOG4802|consensus 91.5 1.4 3E-05 45.5 9.7 127 739-871 208-342 (516)
452 cd03519 Link_domain_HAPLN_modu 90.6 0.22 4.7E-06 39.6 2.5 23 48-70 10-32 (91)
453 KOG1026|consensus 90.6 0.22 4.9E-06 56.7 3.7 245 412-679 65-366 (774)
454 PF09240 IL6Ra-bind: Interleuk 90.3 3.4 7.4E-05 34.6 9.8 84 888-974 1-88 (99)
455 KOG4228|consensus 89.2 0.89 1.9E-05 53.7 7.0 137 754-908 1-137 (1087)
456 PF02010 REJ: REJ domain; Int 89.2 0.33 7.2E-06 54.5 3.7 310 505-825 2-351 (440)
457 PF05790 C2-set: Immunoglobuli 87.9 7.3 0.00016 30.9 9.3 25 255-280 42-67 (80)
458 cd03520 Link_domain_CSPGs_modu 87.3 0.49 1.1E-05 38.3 2.4 22 48-69 10-31 (96)
459 PHA02914 Immunoglobulin-like d 87.3 41 0.00089 35.2 29.1 114 411-530 276-422 (500)
460 PF11465 Receptor_2B4: Natural 86.7 1.8 3.8E-05 35.8 5.3 39 253-292 68-106 (108)
461 COG3401 Fibronectin type 3 dom 86.3 5.8 0.00013 40.4 9.7 163 790-977 82-246 (343)
462 PF05790 C2-set: Immunoglobuli 86.1 7.9 0.00017 30.7 8.6 51 429-485 27-78 (80)
463 PF11465 Receptor_2B4: Natural 86.0 5 0.00011 33.3 7.5 76 697-774 28-106 (108)
464 PHA02865 MHC-like TNF binding 85.7 1.9 4.1E-05 44.4 6.2 21 416-436 216-238 (338)
465 PF06832 BiPBP_C: Penicillin-B 85.0 11 0.00024 30.8 9.5 54 212-284 32-85 (89)
466 cd01102 Link_Domain The link d 82.9 0.81 1.8E-05 37.0 1.8 23 48-70 13-35 (92)
467 PHA03283 envelope glycoprotein 82.9 22 0.00047 38.8 12.6 83 351-436 134-234 (542)
468 KOG4152|consensus 82.5 6.5 0.00014 42.0 8.6 123 747-872 654-789 (830)
469 smart00445 LINK Link (Hyaluron 82.2 0.89 1.9E-05 36.9 1.8 23 48-70 14-36 (94)
470 PF02010 REJ: REJ domain; Int 82.1 2.2 4.7E-05 47.9 5.7 297 212-524 3-340 (440)
471 PF02124 Marek_A: Marek's dise 82.0 45 0.00097 32.1 13.1 131 430-569 8-159 (211)
472 PHA03282 envelope glycoprotein 81.8 33 0.00072 36.7 13.2 45 249-294 117-162 (540)
473 KOG4228|consensus 80.0 3.8 8.1E-05 48.8 6.5 100 860-974 144-243 (1087)
474 PHA03286 envelope glycoprotein 79.1 25 0.00054 37.5 11.3 83 351-435 127-225 (492)
475 cd03518 Link_domain_HAPLN_modu 79.1 1.3 2.7E-05 36.0 1.7 22 48-69 13-34 (95)
476 KOG1026|consensus 79.1 2.8 6.1E-05 48.3 5.1 154 410-582 203-362 (774)
477 cd03521 Link_domain_KIAA0527_l 79.0 1.4 3E-05 34.8 1.9 22 48-69 13-34 (95)
478 PF08391 Ly49: Ly49-like prote 78.7 1.3 2.9E-05 37.7 1.8 23 21-43 97-119 (119)
479 cd03515 Link_domain_TSG_6_like 78.2 1.3 2.7E-05 35.8 1.5 22 48-69 13-34 (93)
480 PHA02865 MHC-like TNF binding 78.0 4.6 0.0001 41.7 5.7 22 312-333 216-238 (338)
481 PF07495 Y_Y_Y: Y_Y_Y domain; 77.7 4.3 9.2E-05 30.8 4.3 46 922-974 9-55 (66)
482 PF00193 Xlink: Extracellular 77.5 1.9 4.1E-05 35.2 2.3 23 48-70 13-35 (92)
483 cd05890 Ig2_Nectin-1_like Seco 77.5 21 0.00046 29.0 7.9 74 212-291 23-97 (98)
484 PLN02533 probable purple acid 76.7 12 0.00025 41.4 9.0 79 777-861 40-121 (427)
485 PHA03189 UL14 tegument protein 75.3 28 0.0006 34.9 9.8 21 495-515 59-79 (348)
486 PF02480 Herpes_gE: Alphaherpe 74.9 5 0.00011 44.0 5.4 85 350-436 88-190 (439)
487 PF06832 BiPBP_C: Penicillin-B 73.5 38 0.00083 27.6 9.2 56 605-669 31-86 (89)
488 cd05890 Ig2_Nectin-1_like Seco 73.5 9.8 0.00021 30.8 5.2 57 314-373 24-86 (98)
489 PLN02533 probable purple acid 73.4 21 0.00047 39.4 10.0 75 884-965 39-121 (427)
490 PF06328 Lep_receptor_Ig: Ig-l 72.8 22 0.00047 29.0 7.3 61 599-660 14-81 (89)
491 PF02124 Marek_A: Marek's dise 72.4 96 0.0021 29.9 17.9 100 619-722 8-117 (211)
492 KOG3632|consensus 71.8 2.3 5E-05 49.1 2.0 156 781-968 581-739 (1335)
493 cd03517 Link_domain_CSPGs_modu 71.8 1.9 4.2E-05 35.1 1.0 23 48-70 13-35 (95)
494 PF06328 Lep_receptor_Ig: Ig-l 71.8 17 0.00037 29.6 6.5 61 410-470 14-81 (89)
495 PF03921 ICAM_N: Intercellular 70.2 59 0.0013 26.6 9.4 77 596-680 11-90 (91)
496 PHA03281 envelope glycoprotein 65.4 1E+02 0.0023 33.9 12.2 120 349-471 296-495 (642)
497 cd03516 Link_domain_CD44_like 65.0 4.1 9E-05 35.9 1.8 22 48-69 18-39 (144)
498 PHA03283 envelope glycoprotein 60.1 39 0.00084 37.0 8.1 75 450-524 133-233 (542)
499 PF03921 ICAM_N: Intercellular 58.8 62 0.0013 26.4 7.3 79 686-779 10-90 (91)
500 PHA03052 Hypothetical protein; 58.2 17 0.00037 27.2 3.6 35 496-530 5-42 (69)
No 1
>KOG3513|consensus
Probab=100.00 E-value=2.2e-104 Score=873.49 Aligned_cols=761 Identities=39% Similarity=0.706 Sum_probs=668.5
Q ss_pred CeeEeCCCceEecCCCccccCcEEEEEEeecCCCCeEEEEEcccccccccccccCCCCCCceEeecceEEEeCCCCCCCC
Q psy12060 190 PYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVEDR 269 (978)
Q Consensus 190 P~~~~~p~~~~~~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~d~ 269 (978)
|.|+.+|.+.++...... ..+.|.|.|.|+|.|+++|+|||.+.. +....++....|+|.|.+.....|.
T Consensus 40 P~f~~q~~~~~~~~~~~~--~~v~l~C~A~G~P~Psy~W~kng~~~d--------~~~~~~~~~~~G~lvI~~p~~~~d~ 109 (1051)
T KOG3513|consen 40 PVFVEQPNDVIVPFPSDD--SSVTLNCEANGNPEPSYRWTKNGTEFD--------PTEYPRVSVLGGTLVITNPDAALDQ 109 (1051)
T ss_pred ceeeecCCceEEecccCC--ccEEEEEEecCCCCceeEEEECCeecc--------cccccceeeecCceEecCCcchhhc
Confidence 899999998887755421 159999999999999999999997642 3344455566899999988558999
Q ss_pred eEEEEEEEeCceeEEeEEEEEEEeeeccccc-CCCCeeeecccCeEEEeCCCCCCCCceEEEecccccccc-cccceEEE
Q psy12060 270 GSYHCKASNKFGSIISESVQLAFGFIGEFNL-KRAPEIGNQNWGKAMFCDPPTNYPGVNYYWARDYFPNFV-EEDKRVFV 347 (978)
Q Consensus 270 G~Y~C~a~n~~g~~~s~~~~l~v~~~~~~~~-~~~~~~~~~~~~~~l~C~~~~~~p~~~i~W~~~~~~~~~-~~~~~~~~ 347 (978)
|.|+|.|+|..|.+.|..+.|...+++.|.. .+.+..+.+|+++.|.|.++.++|.+.+.|+.++.+... .+..|+..
T Consensus 110 G~YqC~AsN~~Gta~S~~~~l~~~~i~~F~~e~~~~v~v~eG~~~~L~C~pP~~~P~l~~~W~~~~~~~~~~~~~~r~~~ 189 (1051)
T KOG3513|consen 110 GIYQCFASNKLGTAVSREARLQFGFIPKFKKEERSPVEVEEGDGVVLPCNPPAHFPPLRYYWMLNEFPHFVQIDNRRVFS 189 (1051)
T ss_pred ceeEEEeecccceeeccceeecccccccCccccCCcEEEEeCCceEEeCCCCCCCCCccEEehhccCCcccccCcceeEe
Confidence 9999999999999999999999999999884 467788999999999999999999999999998866433 34468888
Q ss_pred eeCCcEEEeeeeeecceeeEEEEEeecccccccCCceeEEEccCCCccccccCCCCCCCCC--CCCCCCCcEEEEEEEee
Q psy12060 348 SYDGALYFSALEQIDAGNYSCNVQSKVSDTGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFP--EAPKAGDKVRLECVAFG 425 (978)
Q Consensus 348 ~~~~~L~i~~~~~~d~G~Y~C~~~n~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~--~~v~~G~~~~l~C~~~g 425 (978)
..+|.|+|.++..+|.+.|.|.|.+........+..+.|.+.... .....++.++..++ .....|+.+.|+|.+.|
T Consensus 190 ~~~G~Lyfs~V~~~D~~~Y~C~a~~~~~~~~v~~~~~~L~~~~~~--~~~~~~P~i~~~~p~~~~a~~G~~v~LECfA~G 267 (1051)
T KOG3513|consen 190 QENGNLYFSNVETSDFGNYICSATFPSTQTIVQGPPFPLIVRSNN--VMREYAPKILVPFPETETALKGQSVKLECFALG 267 (1051)
T ss_pred cccceEEEeecchhhcCceEEEEEchhhcccccCCceeEEEcccc--cccccCCccccCCCCcccccCCCeEEEEEEecC
Confidence 889999999999999999999999987777777888888884321 11122222222222 45679999999999999
Q ss_pred cCCCeeEEEEcCc-cCCCCceeeecccEEEeCCCCCCCCeEEEEEEEeCCCceEEEEEEEEEeeceeeccCCcccccCCC
Q psy12060 426 YPVPSYNWTRRGS-PLPRNAYFENFNRILTIPNVKVEDQGEYICRASNDRSALESSVTISIQAEPNFTIPLTDKHMDNQA 504 (978)
Q Consensus 426 ~p~~~v~W~~~~~-~l~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~p~~~~~~~~~~~~~g~ 504 (978)
+|.|+|.|+|.|. +++........+.+|.|.+++.+|+|.|+|.|+|..|.....+.|.|..+|.+...+.+..+..|+
T Consensus 268 ~P~P~i~W~k~~g~~~~~r~~~~~~~~vL~I~nv~~~D~G~Y~C~AeN~~G~~~~~~~v~v~a~P~w~~~~~d~~~~~gs 347 (1051)
T KOG3513|consen 268 NPTPQIKWRKVDGKPPPRRATYSNYGKVLKIPNVQYEDAGEYECIAENSRGSATHSGHVTVYAPPYWLQKPQDTEADTGS 347 (1051)
T ss_pred CCCCcEEEEeCCCCCCCcceeeeccccEEEecccCcCCCeEEEEEEecccccceeeEEEEEecCchhhcccceeEecCCC
Confidence 9999999999888 666667778888999999999999999999999999999999999999999999999999999999
Q ss_pred ceeEEEEeecCCCCeeEEeECCEECCCCCCCCCCCCcEEEecCEEEEEeCCCCCCCeEEEEEEEcCCCceeeEEEEEEEE
Q psy12060 505 DLTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQDNVLTIRYLNPERDPAMYQCRAKNQLKTRYSSAQLRVLT 584 (978)
Q Consensus 505 ~~~l~C~~~~~p~~~i~W~~~g~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~ 584 (978)
+++|.|.+.|.|.|+|+|+|||.++... ....++.+..++|.|++++. .|+|+|+|.|+|..|...+++.|.|..
T Consensus 348 ~v~~eC~a~g~P~p~v~WlkNg~pl~~~----~r~~~~~i~~g~L~is~v~~-~dsg~YQC~A~Nk~G~i~anA~L~V~a 422 (1051)
T KOG3513|consen 348 NVTLECKASGKPNPTVKWLKNGEPLEPA----ERDPRYKIDDGTLIISNVQE-SDSGVYQCIAENKYGTIYANAELKVLA 422 (1051)
T ss_pred CeEEEEEecCCCCCceEEeeCCeecCcc----CCCcceEEeCCEEEEEeccc-ccCeEEEeeeecccceEeeeeEEEEEc
Confidence 9999999999999999999999999832 13455889999999999997 999999999999999999999999999
Q ss_pred cCCccccCCCCcceeecCCCeEEEEEeeccCCCCeeEEeeCCEEecCCCcEEEeecCcEEEccccCCCCEEEEEEEEeCC
Q psy12060 585 LKPSFKKRPLESETYAGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTATNVH 664 (978)
Q Consensus 585 ~~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~i~W~~~g~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~ 664 (978)
.+|.+...+....+.+..|.++.|.|.+.+.|.|.++|.+++..+..++|+.+..+|+|.|.+++.+|+|.|+|.|.|..
T Consensus 423 ~~P~f~~~p~~~~~~a~~g~~v~i~C~~~asP~p~~~W~k~~~~~~~~~r~~i~edGtL~I~n~t~~DaG~YtC~A~N~~ 502 (1051)
T KOG3513|consen 423 SAPVFPLNPVERKVMAVVGGTVTIDCKPFASPKPKVSWLKGGEKLLQSGRIRILEDGTLEISNVTRSDAGKYTCVAENKL 502 (1051)
T ss_pred cCCCCCCCccceEEEEEeCCeEEEeeccCCCCcceEEEEcCCcccccCceEEECCCCcEEecccCcccCcEEEEEEEccc
Confidence 99999999988888899999999999999999999999999998888999999999999999999999999999999999
Q ss_pred ceeeeeEEEEEEeCCceeeeCCCceEEEccccEEEEEEeeecCCcCeEEEEeeCCEEccccccccccCCeeecCC---ce
Q psy12060 665 GMDESKGRLIVLHGPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDG---GL 741 (978)
Q Consensus 665 g~~~~~~~l~v~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~~~W~~~g~~~~~~~~~~~~~~~~~~~~---~~ 741 (978)
|.......|.|..++.+.. .|....+..|+.++|.|.+..++..++.|.|.+||..+.... ........++ +.
T Consensus 503 G~a~~~~~L~Vkd~tri~~-~P~~~~v~~g~~v~l~Ce~shD~~ld~~f~W~~nG~~id~~~---~~~~~~~~~~~~~g~ 578 (1051)
T KOG3513|consen 503 GKAESTGNLIVKDATRITL-APSNTDVKVGESVTLTCEASHDPSLDITFTWKKNGRPIDFNP---DGDHFEINDGSDSGR 578 (1051)
T ss_pred CccceEEEEEEecCceEEe-ccchhhhccCceEEEEeecccCCCcceEEEEEECCEEhhccC---CCCceEEeCCcCccc
Confidence 9999999999999988776 788889999999999999999999999999999999875422 1112222222 46
Q ss_pred EEEeccCCCCCEEEEEEEEcCCCceeeeEEEEEcCCCCCCCceEEEEeeCCeeEEEeecCCCCCCCceeEEEEEeecccc
Q psy12060 742 LEITNASFADAGEYECVVKSTVGKISTKTTVIVEGPPGLPGGVQVVEVHKTSATIQWTDGATNGRPITHYKIIARTNWNS 821 (978)
Q Consensus 742 l~i~~~~~~d~g~Y~c~a~n~~G~~s~~~~l~v~~~P~~P~~~~~~~~~~~~v~l~W~~p~~~~~~i~~Y~v~~~~~~~~ 821 (978)
|+|.++++.|+|.|.|+|....-+.++.+.+.|.+||+||.++++..++.+++.|+|.++.++.+||.+|.|+.+.....
T Consensus 579 L~i~nv~l~~~G~Y~C~aqT~~Ds~s~~A~l~V~gpPgpP~~v~~~~i~~t~~~lsW~~g~dn~SpI~~Y~iq~rt~~~~ 658 (1051)
T KOG3513|consen 579 LTIANVSLEDSGKYTCVAQTALDSASARADLLVRGPPGPPPDVHVDDISDTTARLSWSPGSDNNSPIEKYTIQFRTPFPG 658 (1051)
T ss_pred eEEEeeccccCceEEEEEEEeecchhcccceEEecCCCCCCceeEeeeccceEEEEeecCCCCCCCceEEeEEecCCCCC
Confidence 99999999999999999999888999999999999999999999999999999999999999999999999999999999
Q ss_pred CceEecccccceeeeecCCceeeEEeeccCCCceeEEEEEEecCCccCCCCCCCCCCCCCCCCCCCCCCceeecccccCc
Q psy12060 822 TWFNVSEHVIGKEVDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPSPQYNTPADKPYQAPSRIGGGGGKIGD 901 (978)
Q Consensus 822 ~w~~~~~~~~~~~~~~~~~~~~~~~~~~L~p~~~Y~~~v~A~N~~G~g~~s~~~~~~~t~~~~P~~~P~~~~~~~~~~~s 901 (978)
.|..+...... . .+..+.++.+ |.|+..|+|||.|+|..|.|+||.++..++|.+++|...|.|+.......+.
T Consensus 659 ~W~~v~~vp~~---~--~~~~sa~vv~-L~Pwv~YeFRV~AvN~iG~gePS~pS~~~rT~ea~P~~~P~nv~g~g~~~~e 732 (1051)
T KOG3513|consen 659 KWKAVTTVPGN---I--TGDESATVVN-LSPWVEYEFRVVAVNSIGIGEPSPPSEKVRTPEAAPSVNPSNVKGGGGSPTE 732 (1051)
T ss_pred cceEeeECCCc---c--cCccceeEEc-cCCCcceEEEEEEEcccccCCCCCCccceecCCCCCccCCccccccCCCCce
Confidence 99988732211 1 1123477899 9999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEEeCCCCCCCCCcceEEEEEEecCCc-cceeeeeeeccceeEEEEEcCCCCceeeEEEEEEEecCCCCCCCCCC
Q psy12060 902 LSISWEPLPREKQNAPNIYYKIFWRKKNDT-EFQSETLKEYGNVGIAVVRIPSEFYYTEYEVKVQAINDVGPGPESEV 978 (978)
Q Consensus 902 i~v~W~~p~~~~~~g~i~~Y~i~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~L~p~t~Y~~~V~A~n~~G~gp~S~~ 978 (978)
+.|+|+|.++...||+-.+|+|.|++.+.. .|....+.... ...+++......|++.|+++|+|+|..|+||.|.+
T Consensus 733 LvItW~Pl~~~~qNG~gfgY~Vswr~~g~~~~W~~~~v~~~d-~~~~V~~~~st~~~tpyevKVqa~N~~GeGp~s~~ 809 (1051)
T KOG3513|consen 733 LVITWEPLPEEEQNGPGFGYRVSWRPQGADKEWKEVIVSNQD-QPRYVVSNESTEPFTPYEVKVQAINDQGEGPESQV 809 (1051)
T ss_pred EEEEeccCCHHHccCCCceEEEEEEeCCCCcccceeEecccC-CceEEEcCCCCCCcceeEEEEEEecCCCCCCCCce
Confidence 999999999999999999999999999977 99988776543 44567777788899999999999999999999863
No 2
>KOG3513|consensus
Probab=100.00 E-value=8.4e-76 Score=647.44 Aligned_cols=771 Identities=22% Similarity=0.336 Sum_probs=563.6
Q ss_pred ceeeeecC-CCcceeeEEEecccccceeecccceeeeeecccCCCCCCCCCeeEeCCCceEecCCCccccCcEEEEEEe-
Q psy12060 141 RWGFERVT-GMEPLLFICEASIQKLHYLLNDDRTYQYGMDIENPDKIPRGPYFIKQPTDVVFDLSKRSILNDITLSCYA- 218 (978)
Q Consensus 141 ~~~~~~~~-~~~~~~~~C~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~~~P~~~~~p~~~~~~~~~~~~g~~~~l~C~~- 218 (978)
.|.|..-. -.|.|.|.|.| .|..+.. .+-.+.|+... -+.|..+-.+.+ .+++|+.+.|.|..
T Consensus 97 ~lvI~~p~~~~d~G~YqC~A----sN~~Gta-~S~~~~l~~~~------i~~F~~e~~~~v----~v~eG~~~~L~C~pP 161 (1051)
T KOG3513|consen 97 TLVITNPDAALDQGIYQCFA----SNKLGTA-VSREARLQFGF------IPKFKKEERSPV----EVEEGDGVVLPCNPP 161 (1051)
T ss_pred ceEecCCcchhhcceeEEEe----eccccee-eccceeecccc------cccCccccCCcE----EEEeCCceEEeCCCC
Confidence 44555554 66999999999 4554432 12223333221 234443322222 13457789999997
Q ss_pred ecCCCCeEEEEEcccccccccccccCCCCCCc-eEeecceEEEeCCCCCCCCeEEEEEEEeCcee--EEeEEEEEEE---
Q psy12060 219 GGYPNPSYEWFKEDYVQDRLVANLIDPLSDKR-FTLSGGNLIINDPRQVEDRGSYHCKASNKFGS--IISESVQLAF--- 292 (978)
Q Consensus 219 ~g~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~i~~~~~~~d~G~Y~C~a~n~~g~--~~s~~~~l~v--- 292 (978)
.+.|.+.+.|..+..+. +....+.| +...+|+|.|.++ ..+|.+.|.|.|.+..-. .....+.|.+
T Consensus 162 ~~~P~l~~~W~~~~~~~-------~~~~~~~r~~~~~~G~Lyfs~V-~~~D~~~Y~C~a~~~~~~~~v~~~~~~L~~~~~ 233 (1051)
T KOG3513|consen 162 AHFPPLRYYWMLNEFPH-------FVQIDNRRVFSQENGNLYFSNV-ETSDFGNYICSATFPSTQTIVQGPPFPLIVRSN 233 (1051)
T ss_pred CCCCCccEEehhccCCc-------ccccCcceeEecccceEEEeec-chhhcCceEEEEEchhhcccccCCceeEEEccc
Confidence 47888999999887542 11222233 3446899999998 899999999999984321 1122333333
Q ss_pred ----eeecccccCCC-CeeeecccCeEEEeCCCCCCCCceEEEecccccccccccceEEEeeCCcEEEeeeeeecceeeE
Q psy12060 293 ----GFIGEFNLKRA-PEIGNQNWGKAMFCDPPTNYPGVNYYWARDYFPNFVEEDKRVFVSYDGALYFSALEQIDAGNYS 367 (978)
Q Consensus 293 ----~~~~~~~~~~~-~~~~~~~~~~~l~C~~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~ 367 (978)
.+.|.+....+ ......|+.+.|.|.+ .|+|-|+|.|+|.+... ....-........|.|.+++.+|+|.|+
T Consensus 234 ~~~~~~~P~i~~~~p~~~~a~~G~~v~LECfA-~G~P~P~i~W~k~~g~~--~~~r~~~~~~~~vL~I~nv~~~D~G~Y~ 310 (1051)
T KOG3513|consen 234 NVMREYAPKILVPFPETETALKGQSVKLECFA-LGNPTPQIKWRKVDGKP--PPRRATYSNYGKVLKIPNVQYEDAGEYE 310 (1051)
T ss_pred ccccccCCccccCCCCcccccCCCeEEEEEEe-cCCCCCcEEEEeCCCCC--CCcceeeeccccEEEecccCcCCCeEEE
Confidence 34454444322 4556678889999998 89999999999988741 1222223334568999999999999999
Q ss_pred EEEEeecccccccCCceeEEEccCCCccccccCCCCCCCCCCCCCCCCcEEEEEEEeecCCCeeEEEEcCccCCCCce--
Q psy12060 368 CNVQSKVSDTGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPEAPKAGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAY-- 445 (978)
Q Consensus 368 C~~~n~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~v~~G~~~~l~C~~~g~p~~~v~W~~~~~~l~~~~~-- 445 (978)
|.|+|..| .....+.|.|..+|.+... + ....+-.|++++|.|.+.|.|.|+|+|++||.+|....+
T Consensus 311 C~AeN~~G---~~~~~~~v~v~a~P~w~~~--~------~d~~~~~gs~v~~eC~a~g~P~p~v~WlkNg~pl~~~~r~~ 379 (1051)
T KOG3513|consen 311 CIAENSRG---SATHSGHVTVYAPPYWLQK--P------QDTEADTGSNVTLECKASGKPNPTVKWLKNGEPLEPAERDP 379 (1051)
T ss_pred EEEecccc---cceeeEEEEEecCchhhcc--c------ceeEecCCCCeEEEEEecCCCCCceEEeeCCeecCccCCCc
Confidence 99999986 3444589999988876541 1 123566899999999999999999999999999987666
Q ss_pred -eeecccEEEeCCCCCCCCeEEEEEEEeCCCceEEEEEEEEEee-ceeeccCCcc--cccCCCceeEEEEeecCCCCeeE
Q psy12060 446 -FENFNRILTIPNVKVEDQGEYICRASNDRSALESSVTISIQAE-PNFTIPLTDK--HMDNQADLTWTCEAFGVPDVTYS 521 (978)
Q Consensus 446 -~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~-p~~~~~~~~~--~~~~g~~~~l~C~~~~~p~~~i~ 521 (978)
.....++|+|.+++.+|+|.|+|.|+|..|...+++.|.|... |.+...+... .+..|.++.|.|...+.|.+.++
T Consensus 380 ~~~i~~g~L~is~v~~~dsg~YQC~A~Nk~G~i~anA~L~V~a~~P~f~~~p~~~~~~a~~g~~v~i~C~~~asP~p~~~ 459 (1051)
T KOG3513|consen 380 RYKIDDGTLIISNVQESDSGVYQCIAENKYGTIYANAELKVLASAPVFPLNPVERKVMAVVGGTVTIDCKPFASPKPKVS 459 (1051)
T ss_pred ceEEeCCEEEEEecccccCeEEEeeeecccceEeeeeEEEEEccCCCCCCCccceEEEEEeCCeEEEeeccCCCCcceEE
Confidence 6777899999999999999999999999999999999999976 7777765544 46889999999999999999999
Q ss_pred EeECCEECCCCCCCCCCCCcEEE-ecCEEEEEeCCCCCCCeEEEEEEEcCCCceeeEEEEEEEEcCCccccCCCCcceee
Q psy12060 522 WFRNGELLNSETLPLEDQDRYFI-QDNVLTIRYLNPERDPAMYQCRAKNQLKTRYSSAQLRVLTLKPSFKKRPLESETYA 600 (978)
Q Consensus 522 W~~~g~~~~~~~~~~~~~~~~~~-~~~~l~i~~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~~p~~~~~~~~~~~~~ 600 (978)
|.|+++.+. ...++.+ .+++|.|.+++. +|+|.|+|.|.|..|.....+.|.|.. ++.+...| ....+
T Consensus 460 W~k~~~~~~-------~~~r~~i~edGtL~I~n~t~-~DaG~YtC~A~N~~G~a~~~~~L~Vkd-~tri~~~P--~~~~v 528 (1051)
T KOG3513|consen 460 WLKGGEKLL-------QSGRIRILEDGTLEISNVTR-SDAGKYTCVAENKLGKAESTGNLIVKD-ATRITLAP--SNTDV 528 (1051)
T ss_pred EEcCCcccc-------cCceEEECCCCcEEecccCc-ccCcEEEEEEEcccCccceEEEEEEec-CceEEecc--chhhh
Confidence 999888444 4567666 788999999997 999999999999999999999999986 56666644 44557
Q ss_pred cCCCeEEEEEeeccCCC--CeeEEeeCCEEecC---CCcEEEee---cCcEEEccccCCCCEEEEEEEEeCCceeeeeEE
Q psy12060 601 GEGGNVTIFCNPEAAPK--PKFVWKKDGNIIGS---GGRRKIFE---NGNLLISPVSRDDSGIYSCTATNVHGMDESKGR 672 (978)
Q Consensus 601 ~~g~~~~l~C~~~~~p~--~~i~W~~~g~~~~~---~~~~~~~~---~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~ 672 (978)
..|+.++|.|.+..++. ..|.|.+||..+.. ...+.... .+.|+|.+++..|+|.|+|+|.....+.++.+.
T Consensus 529 ~~g~~v~l~Ce~shD~~ld~~f~W~~nG~~id~~~~~~~~~~~~~~~~g~L~i~nv~l~~~G~Y~C~aqT~~Ds~s~~A~ 608 (1051)
T KOG3513|consen 529 KVGESVTLTCEASHDPSLDITFTWKKNGRPIDFNPDGDHFEINDGSDSGRLTIANVSLEDSGKYTCVAQTALDSASARAD 608 (1051)
T ss_pred ccCceEEEEeecccCCCcceEEEEEECCEEhhccCCCCceEEeCCcCccceEEEeeccccCceEEEEEEEeecchhcccc
Confidence 89999999999987764 48999999997753 23333322 235999999999999999999998888888899
Q ss_pred EEEEeCCceeeeCCCceEE--EccccEEEEEEeeecCCcCeEEEEeeCCEEccccccccccCCeeecCC-ceEEEeccCC
Q psy12060 673 LIVLHGPSYYEQLPPKITI--AAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDG-GLLEITNASF 749 (978)
Q Consensus 673 l~v~~~p~~~~~~~~~~~~--~~g~~~~l~C~~~~~p~~~~~~~W~~~g~~~~~~~~~~~~~~~~~~~~-~~l~i~~~~~ 749 (978)
+.|..+|..+ ..+.+ .....+.|+|....+.-..|.-+-.....+ ....+.......-..++ .+-++.++.+
T Consensus 609 l~V~gpPgpP----~~v~~~~i~~t~~~lsW~~g~dn~SpI~~Y~iq~rt~-~~~~W~~v~~vp~~~~~~~sa~vv~L~P 683 (1051)
T KOG3513|consen 609 LLVRGPPGPP----PDVHVDDISDTTARLSWSPGSDNNSPIEKYTIQFRTP-FPGKWKAVTTVPGNITGDESATVVNLSP 683 (1051)
T ss_pred eEEecCCCCC----CceeEeeeccceEEEEeecCCCCCCCceEEeEEecCC-CCCcceEeeECCCcccCccceeEEccCC
Confidence 9999887633 23333 456788999987665421132111010000 00011000000000111 1345666777
Q ss_pred CCCEEEEEEEEcCCCceeeeE-EEEE---cCCC-CCCCceEEEEeeCCeeEEEeecC--CCCCCCceeEEEEEeecccc-
Q psy12060 750 ADAGEYECVVKSTVGKISTKT-TVIV---EGPP-GLPGGVQVVEVHKTSATIQWTDG--ATNGRPITHYKIIARTNWNS- 821 (978)
Q Consensus 750 ~d~g~Y~c~a~n~~G~~s~~~-~l~v---~~~P-~~P~~~~~~~~~~~~v~l~W~~p--~~~~~~i~~Y~v~~~~~~~~- 821 (978)
--.++|+..|.|..|....+. .-.+ .+.| ..|.++.......+.++|+|+|- ...+++-++|+|.|++.+..
T Consensus 684 wv~YeFRV~AvN~iG~gePS~pS~~~rT~ea~P~~~P~nv~g~g~~~~eLvItW~Pl~~~~qNG~gfgY~Vswr~~g~~~ 763 (1051)
T KOG3513|consen 684 WVEYEFRVVAVNSIGIGEPSPPSEKVRTPEAAPSVNPSNVKGGGGSPTELVITWEPLPEEEQNGPGFGYRVSWRPQGADK 763 (1051)
T ss_pred CcceEEEEEEEcccccCCCCCCccceecCCCCCccCCccccccCCCCceEEEEeccCCHHHccCCCceEEEEEEeCCCCc
Confidence 777888899999998654332 1122 2233 46788988888999999999983 35678889999999999887
Q ss_pred CceEecccccceeeeecCCceeeEEee-ccCCCceeEEEEEEecCCccCCCCCCCCCCCCCCCCCCCCCCceeecccccC
Q psy12060 822 TWFNVSEHVIGKEVDRYTGRKEASIEN-VLVPWSTYEFKVIAGNELGYGEPSSPSPQYNTPADKPYQAPSRIGGGGGKIG 900 (978)
Q Consensus 822 ~w~~~~~~~~~~~~~~~~~~~~~~~~~-~L~p~~~Y~~~v~A~N~~G~g~~s~~~~~~~t~~~~P~~~P~~~~~~~~~~~ 900 (978)
.|....... .....+.+.+ ...|++.|+++|+|.|..|.|+.|... .+...++.|+.+|+.+.+...+++
T Consensus 764 ~W~~~~v~~--------~d~~~~V~~~~st~~~tpyevKVqa~N~~GeGp~s~~~-v~~S~Ed~P~~ap~~~~~~~~s~s 834 (1051)
T KOG3513|consen 764 EWKEVIVSN--------QDQPRYVVSNESTEPFTPYEVKVQAINDQGEGPESQVT-VGYSGEDEPPVAPTKLSAKPLSSS 834 (1051)
T ss_pred ccceeEecc--------cCCceEEEcCCCCCCcceeEEEEEEecCCCCCCCCceE-EEEcCCCCCCCCCccceeecccCc
Confidence 897653311 1123333322 156799999999999999999999877 666789999999999999999999
Q ss_pred cEEEEEEeCCCCCCCCCcceEEEEEEecCCccceeeeeeeccceeEEEEEcCCCCceeeEEEEEEEecCCCCCCCCC
Q psy12060 901 DLSISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETLKEYGNVGIAVVRIPSEFYYTEYEVKVQAINDVGPGPESE 977 (978)
Q Consensus 901 si~v~W~~p~~~~~~g~i~~Y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~p~t~Y~~~V~A~n~~G~gp~S~ 977 (978)
.|.|+|++ +...||.++||.|+|+..++.+-........ ......+|.||+|.|.|.|.|+|+|++|.||+|.
T Consensus 835 ~~~v~W~~--~~~~nG~l~gY~v~Y~~~~~~~~~~~~~~i~--~~~~~~~ltgL~~~T~Y~~~vrA~nsaG~Gp~s~ 907 (1051)
T KOG3513|consen 835 EVNLSWKP--PLWDNGKLTGYEVKYWKINEKEGSLSRVQIA--GNRTSWRLTGLEPNTKYRFYVRAYTSAGGGPASS 907 (1051)
T ss_pred eEEEEecC--cCccCCccceeEEEEEEcCCCcccccceeec--CCcceEeeeCCCCCceEEEEEEEecCCCCCCCcc
Confidence 99999999 4566699999999999987554222222222 3335577999999999999999999999999985
No 3
>KOG4221|consensus
Probab=100.00 E-value=2.6e-67 Score=573.79 Aligned_cols=631 Identities=23% Similarity=0.327 Sum_probs=491.6
Q ss_pred eeecccCeEEEeCCCCC-CCCceEEEecccccccccccceEEEeeCCcEEEeeeee-----ecceeeEEEEEeecccccc
Q psy12060 306 IGNQNWGKAMFCDPPTN-YPGVNYYWARDYFPNFVEEDKRVFVSYDGALYFSALEQ-----IDAGNYSCNVQSKVSDTGR 379 (978)
Q Consensus 306 ~~~~~~~~~l~C~~~~~-~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~-----~d~G~Y~C~~~n~~~~~~~ 379 (978)
...+|..+.|.|.+... -+.+.|.|.|||..+....+.+.....+|+|+|.++.. -|.|.|+|.|+-.... ..
T Consensus 50 d~~~~~svlLecs~~~~~~~~~~i~wkkDg~~l~e~~d~~~~~LsNgSl~i~~v~~~kh~~~~eg~Yqc~atv~~~g-si 128 (1381)
T KOG4221|consen 50 DAMEGSSVLLECSAYAAGGTSVKIEWKKDGSQLNEVYDDRRQLLSNGSLYISSVLASKHNKVDEGVYQCLATVEDVG-SI 128 (1381)
T ss_pred ccccccceEEeccccccCCCCeeEEEccCchhhhhhhhhHHhhccCCceeEeeecccccccccCceEEEEEEccccc-ee
Confidence 33677889999977322 25789999999988766666777888999999999987 7889999999876221 12
Q ss_pred cCCceeEEEccCCCccccccCCCCCCCCCCCCCCCCcEEEEEEEeecCCCeeEEEEcCccCCCCce-eeecccEEEeCCC
Q psy12060 380 NGPFFPLKVFPHSNFQQLKFPNNFPKTFPEAPKAGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAY-FENFNRILTIPNV 458 (978)
Q Consensus 380 ~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~v~~G~~~~l~C~~~g~p~~~v~W~~~~~~l~~~~~-~~~~~~~L~i~~~ 458 (978)
-+....|.+...+.+. +...+.++..|+++.|.|.+.+.|.|.+.|.+++.+++.+.+ ....++.|.|.++
T Consensus 129 ~Sr~a~v~~a~~~~f~--------~~~~~~t~~~g~ta~f~c~vn~e~~p~i~w~kn~~pl~~~~r~i~lpsG~L~I~~~ 200 (1381)
T KOG4221|consen 129 LSRTAKVALAGLADFA--------LQPESTTLLYGQTALFSCEVNAEPVPTIMWLKNDQPLPLDSRVIVLPSGALEISGL 200 (1381)
T ss_pred ecceEEEEecccCccc--------cCccceeEecCCcEEEEEEEcCccCceeEEecccccccCCCcEEEcCCCcEEeccc
Confidence 2333556665444332 223346788999999999999999999999999998876654 4566889999999
Q ss_pred CCCCCeEEEEEEEeCCCc-eEEEEEEEEEeec------eeeccCCcccccCCCceeEEEEeecCCCCeeEEeECCEECCC
Q psy12060 459 KVEDQGEYICRASNDRSA-LESSVTISIQAEP------NFTIPLTDKHMDNQADLTWTCEAFGVPDVTYSWFRNGELLNS 531 (978)
Q Consensus 459 ~~~d~G~Y~C~a~n~~g~-~~~~~~l~V~~~p------~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~i~W~~~g~~~~~ 531 (978)
+..|.|.|+|.+++.... .+..+.|+|...| .|...+....+.+|+++.|.|.+.|.|.|.|.|.|||..|..
T Consensus 201 qp~d~g~yrc~vt~g~~~r~S~~a~ltv~s~~~~~~~~~fl~~p~~~~v~~g~~v~leCvvs~~p~p~v~Wlrng~~i~~ 280 (1381)
T KOG4221|consen 201 QPSDTGEYRCVVTGGASQRTSNEAELTVLSDPGALNKLVFLDEPSNAVVVEGDDVVLECVVSGVPKPSVKWLRNGEKISV 280 (1381)
T ss_pred ccCCCceEEEEEecCCcCCccceeEEEecCCcccccceeeecCCCccccccCCcEEEEEEecCCCCCceEEeeCCeeeee
Confidence 999999999999987543 3556777777433 245567778899999999999999999999999999999873
Q ss_pred CCCCCCCCCcEEEe-cCEEEEEeCCCCCCCeEEEEEEEcCCCceeeEEEEEEEEcCCccccCCCCcceeecCCCeEEEEE
Q psy12060 532 ETLPLEDQDRYFIQ-DNVLTIRYLNPERDPAMYQCRAKNQLKTRYSSAQLRVLTLKPSFKKRPLESETYAGEGGNVTIFC 610 (978)
Q Consensus 532 ~~~~~~~~~~~~~~-~~~l~i~~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~~p~~~~~~~~~~~~~~~g~~~~l~C 610 (978)
+..++.+. .+.|.|.+++. +|+|.|+|.|.|......+.+++.|.. +|.|...+ ....+.++.++.|.|
T Consensus 281 ------ds~rivl~g~~slliS~a~~-~dSg~YtC~Atn~~D~idasaev~V~a-~P~~~~~p--~~l~A~e~~die~ec 350 (1381)
T KOG4221|consen 281 ------DSYRIVLVGGSSLLISNATD-DDSGKYTCRATNTNDSIDASAEVTVLA-PPGFTKAP--TTLVAHESMDIEFEC 350 (1381)
T ss_pred ------cceEEEEecccceEEecccc-ccCceEEEEecCCCcccccceEEEEEc-CCCCCCCC--cceeeeeccceeEeC
Confidence 22444443 66899999996 999999999999877778888999985 68877665 455577899999999
Q ss_pred eeccCCCCeeEEeeCCEEecCCCcEEEeecCcEEEccccCCCCEEEEEEEEeCCceeeeeEEEEEEeCCceee-----eC
Q psy12060 611 NPEAAPKPKFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTATNVHGMDESKGRLIVLHGPSYYE-----QL 685 (978)
Q Consensus 611 ~~~~~p~~~i~W~~~g~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~p~~~~-----~~ 685 (978)
.+.|.|.|.+.|+|||..+...+.+++..++.|.|..+-..|.|.|.|.+.|..|.....+.+.+...|.... ..
T Consensus 351 ~~~g~p~p~v~w~kNgd~~ipsdy~ki~~~~~lrIlgi~~sdeg~yQcvaen~~G~a~a~a~l~vv~~p~~~~s~~~~sa 430 (1381)
T KOG4221|consen 351 PVSGKPIPTVRWYKNGDRIIPSDYFKIVGGGNLRILGIVKSDEGFYQCVAENDAGSAQAAAQLEVVPQPASASSDLLPSA 430 (1381)
T ss_pred CCCCCCcceEEEEecCcccCcccceEecCCCCcEEEEEecccchhhhhhhccCcccccchhhheeccCCcccccCccccC
Confidence 9999999999999999988888888888777899999999999999999999999999999887765433221 12
Q ss_pred CCceEEEccccEEEEEEeeecCC----cCeEEEEeeCC-EEccccccccccCCeeecCCceEEEeccCCCCCEEEEEEEE
Q psy12060 686 PPKITIAAHRNLQLRCSAHTEEL----LDVAYIWTHNG-VRIGNMDLNELETPNINIDGGLLEITNASFADAGEYECVVK 760 (978)
Q Consensus 686 ~~~~~~~~g~~~~l~C~~~~~p~----~~~~~~W~~~g-~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~c~a~ 760 (978)
+..+.+..-....+.|... .|. +...+.|+... ..+.... ......+-.+++.++.......++|+|.
T Consensus 431 p~~lv~~~~~srfi~~tw~-~p~~~~g~i~~~~v~~~~~~~~rer~------~~tss~g~~~tv~nl~p~t~Y~~rv~A~ 503 (1381)
T KOG4221|consen 431 PRDLVANLVSSRFIQLTWR-PPAQISGNISTYTVFYKVEGDVRERL------QNTSSPGIQVTVQNLSPLTMYFFRVRAK 503 (1381)
T ss_pred CcceecccccceeEEEeec-CccccCCCcceEEEEEecCCchhhhh------eeccCCceEEEeeecccceeEEEEEecc
Confidence 3333333333333444333 111 11234565432 2211100 1111122345555555554455556678
Q ss_pred cCCCceeeeEEEEEcCCCCCCCceEEEEeeCCeeEEEeecCCCCCCCceeEEEEEeeccccCceEecccccceeeeecCC
Q psy12060 761 STVGKISTKTTVIVEGPPGLPGGVQVVEVHKTSATIQWTDGATNGRPITHYKIIARTNWNSTWFNVSEHVIGKEVDRYTG 840 (978)
Q Consensus 761 n~~G~~s~~~~l~v~~~P~~P~~~~~~~~~~~~v~l~W~~p~~~~~~i~~Y~v~~~~~~~~~w~~~~~~~~~~~~~~~~~ 840 (978)
|..|...++..|.|..+|..|..+++...+..++.++|++|.-++++|++|++.|...+.+.|..... +
T Consensus 504 n~~g~g~sS~pLkV~t~pEgp~~~~a~ats~~ti~v~WepP~~~n~~I~~yk~~ys~~~~~~~~~~~~-----------n 572 (1381)
T KOG4221|consen 504 NEAGSGESSAPLKVTTQPEGPVQLQAYATSPTTILVTWEPPPFGNGPITGYKLFYSEDDTGKELRVEN-----------N 572 (1381)
T ss_pred CcccCCccCCceEEecCCCCCccccccccCcceEEEEecCCCCCCCCceEEEEEEEcCCCCceEEEec-----------C
Confidence 99999999999999999987777999899999999999999999999999999999887778876644 4
Q ss_pred ceeeEEeeccCCCceeEEEEEEecCCccCCCCCCCCCCCCCCCCCCCCCCceeecccccCcEEEEEEeCCCCCCCCCcce
Q psy12060 841 RKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPSPQYNTPADKPYQAPSRIGGGGGKIGDLSISWEPLPREKQNAPNIY 920 (978)
Q Consensus 841 ~~~~~~~~~L~p~~~Y~~~v~A~N~~G~g~~s~~~~~~~t~~~~P~~~P~~~~~~~~~~~si~v~W~~p~~~~~~g~i~~ 920 (978)
..+++|.+ |++++.|.|+|.|.|.+|.|..|..+ .|.|..+.|..||.|+++...++++|+|+|.+|++...||.|++
T Consensus 573 ~~e~ti~g-L~k~TeY~~~vvA~N~~G~g~sS~~i-~V~Tlsd~PsaPP~Nl~lev~sStsVrVsW~pP~~~t~ng~itg 650 (1381)
T KOG4221|consen 573 ATEYTING-LEKYTEYSIRVVAYNSAGSGVSSADI-TVRTLSDVPSAPPQNLSLEVVSSTSVRVSWLPPPSETQNGQITG 650 (1381)
T ss_pred ccEEEeec-CCCccceEEEEEEecCCCCCCCCCce-EEEeccCCCCCCCcceEEEecCCCeEEEEccCCCcccccceEEE
Confidence 67789999 99999999999999999999988877 88999999999999999999999999999999999999999999
Q ss_pred EEEEEEecCCccceeeeeeeccceeEEEEEcCCCCceeeEEEEEEEecCCCCCCCCCC
Q psy12060 921 YKIFWRKKNDTEFQSETLKEYGNVGIAVVRIPSEFYYTEYEVKVQAINDVGPGPESEV 978 (978)
Q Consensus 921 Y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~p~t~Y~~~V~A~n~~G~gp~S~~ 978 (978)
|+|+|+....+......+.. ++ .+.+.+.+|+|+|.|.|||.|+|..|.||+|+.
T Consensus 651 YkIRy~~~~~~~~~~~t~v~-~n--~~~~l~~~Lep~T~Y~vrIsa~t~nGtGpaS~w 705 (1381)
T KOG4221|consen 651 YKIRYRKLSREDEVNETVVK-GN--TTQYLFNGLEPNTQYRVRISAMTVNGTGPASEW 705 (1381)
T ss_pred EEEEecccCcccccceeecc-cc--hhhhHhhcCCCCceEEEEEEEeccCCCCCcccc
Confidence 99999977644333222211 12 234668889999999999999999999999974
No 4
>KOG4221|consensus
Probab=100.00 E-value=2.4e-66 Score=566.29 Aligned_cols=727 Identities=23% Similarity=0.284 Sum_probs=531.8
Q ss_pred CeeEeCCCceEecCCCccccCcEEEEEEee--cCCCCeEEEEEcccccccccccccCCCCCCceEeecceEEEeCCCC--
Q psy12060 190 PYFIKQPTDVVFDLSKRSILNDITLSCYAG--GYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQ-- 265 (978)
Q Consensus 190 P~~~~~p~~~~~~~~~~~~g~~~~l~C~~~--g~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~-- 265 (978)
-.|..+|++. . +|..+.|.|.+. +.+.+.|.|.|||..+... ....+..+++|+|.|.++..
T Consensus 42 ~~f~~ep~d~--~-----~~~svlLecs~~~~~~~~~~i~wkkDg~~l~e~-------~d~~~~~LsNgSl~i~~v~~~k 107 (1381)
T KOG4221|consen 42 LQFLLEPSDA--M-----EGSSVLLECSAYAAGGTSVKIEWKKDGSQLNEV-------YDDRRQLLSNGSLYISSVLASK 107 (1381)
T ss_pred ceEEeccccc--c-----cccceEEeccccccCCCCeeEEEccCchhhhhh-------hhhHHhhccCCceeEeeecccc
Confidence 4577778755 2 345599999974 3357899999998644211 11334567899999988631
Q ss_pred --CCCCeEEEEEEEeC-ceeEEeEEEEEEEeeecccccCCCCeeeecccCeEEEeCCCCCCCCceEEEeccccccccccc
Q psy12060 266 --VEDRGSYHCKASNK-FGSIISESVQLAFGFIGEFNLKRAPEIGNQNWGKAMFCDPPTNYPGVNYYWARDYFPNFVEED 342 (978)
Q Consensus 266 --~~d~G~Y~C~a~n~-~g~~~s~~~~l~v~~~~~~~~~~~~~~~~~~~~~~l~C~~~~~~p~~~i~W~~~~~~~~~~~~ 342 (978)
.-|.|.|+|.|+-. .|+..|..+.|.+.-.+.|........+..|+++.|.|.+ .+.|.+.+.|.||..++..+
T Consensus 108 h~~~~eg~Yqc~atv~~~gsi~Sr~a~v~~a~~~~f~~~~~~~t~~~g~ta~f~c~v-n~e~~p~i~w~kn~~pl~~~-- 184 (1381)
T KOG4221|consen 108 HNKVDEGVYQCLATVEDVGSILSRTAKVALAGLADFALQPESTTLLYGQTALFSCEV-NAEPVPTIMWLKNDQPLPLD-- 184 (1381)
T ss_pred cccccCceEEEEEEccccceeecceEEEEecccCccccCccceeEecCCcEEEEEEE-cCccCceeEEecccccccCC--
Confidence 26899999999965 7899999999999999999988888999999999999999 55788899999999876544
Q ss_pred ceEEEeeCCcEEEeeeeeecceeeEEEEEeecccccccCCceeEEEccCCCcc-ccccCCCCCCCCCCCCCCCCcEEEEE
Q psy12060 343 KRVFVSYDGALYFSALEQIDAGNYSCNVQSKVSDTGRNGPFFPLKVFPHSNFQ-QLKFPNNFPKTFPEAPKAGDKVRLEC 421 (978)
Q Consensus 343 ~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~n~~~~~~~~~~~~~l~V~~~~~~~-~~~~~~~~~~~~~~~v~~G~~~~l~C 421 (978)
.++....+|.|.|.+++..|.|.|+|.|++.... +.+....|+|...+... .+.+ .....+..+.+|+++.|+|
T Consensus 185 ~r~i~lpsG~L~I~~~qp~d~g~yrc~vt~g~~~--r~S~~a~ltv~s~~~~~~~~~f---l~~p~~~~v~~g~~v~leC 259 (1381)
T KOG4221|consen 185 SRVIVLPSGALEISGLQPSDTGEYRCVVTGGASQ--RTSNEAELTVLSDPGALNKLVF---LDEPSNAVVVEGDDVVLEC 259 (1381)
T ss_pred CcEEEcCCCcEEecccccCCCceEEEEEecCCcC--CccceeEEEecCCcccccceee---ecCCCccccccCCcEEEEE
Confidence 3888899999999999999999999999987643 33555788887433222 2221 1223456788999999999
Q ss_pred EEeecCCCeeEEEEcCccCCCCc-e-eeecccEEEeCCCCCCCCeEEEEEEEeCCCceEEEEEEEEEeeceeeccCCccc
Q psy12060 422 VAFGYPVPSYNWTRRGSPLPRNA-Y-FENFNRILTIPNVKVEDQGEYICRASNDRSALESSVTISIQAEPNFTIPLTDKH 499 (978)
Q Consensus 422 ~~~g~p~~~v~W~~~~~~l~~~~-~-~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~p~~~~~~~~~~ 499 (978)
.+.|.|.|+|.|.||+..|..+. + .....+.|.|.+++..|+|.|+|+|+|......+++.|+|..+|.|...+....
T Consensus 260 vvs~~p~p~v~Wlrng~~i~~ds~rivl~g~~slliS~a~~~dSg~YtC~Atn~~D~idasaev~V~a~P~~~~~p~~l~ 339 (1381)
T KOG4221|consen 260 VVSGVPKPSVKWLRNGEKISVDSYRIVLVGGSSLLISNATDDDSGKYTCRATNTNDSIDASAEVTVLAPPGFTKAPTTLV 339 (1381)
T ss_pred EecCCCCCceEEeeCCeeeeecceEEEEecccceEEeccccccCceEEEEecCCCcccccceEEEEEcCCCCCCCCccee
Confidence 99999999999999999987653 2 234467899999999999999999999877788889999999999999888888
Q ss_pred ccCCCceeEEEEeecCCCCeeEEeECCEECCCCCCCCCCCCcEEEe-cCEEEEEeCCCCCCCeEEEEEEEcCCCceeeEE
Q psy12060 500 MDNQADLTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQ-DNVLTIRYLNPERDPAMYQCRAKNQLKTRYSSA 578 (978)
Q Consensus 500 ~~~g~~~~l~C~~~~~p~~~i~W~~~g~~~~~~~~~~~~~~~~~~~-~~~l~i~~~~~~~d~G~Y~C~a~n~~g~~~~~~ 578 (978)
..++.++.|.|.+.|.|.+.+.|+|||..+.. .+.+.+. ++.|.|..+-. .|.|.|+|.+.|..|.....+
T Consensus 340 A~e~~die~ec~~~g~p~p~v~w~kNgd~~ip-------sdy~ki~~~~~lrIlgi~~-sdeg~yQcvaen~~G~a~a~a 411 (1381)
T KOG4221|consen 340 AHESMDIEFECPVSGKPIPTVRWYKNGDRIIP-------SDYFKIVGGGNLRILGIVK-SDEGFYQCVAENDAGSAQAAA 411 (1381)
T ss_pred eeeccceeEeCCCCCCCcceEEEEecCcccCc-------ccceEecCCCCcEEEEEec-ccchhhhhhhccCcccccchh
Confidence 89999999999999999999999999988763 2333332 23388888775 899999999999999998888
Q ss_pred EEEEEEcCCcccc----CCCCcceeecCCCeEEEEEeec-----cCCCCeeEEeeCCEEecCCCcEEEeecC-cEEEccc
Q psy12060 579 QLRVLTLKPSFKK----RPLESETYAGEGGNVTIFCNPE-----AAPKPKFVWKKDGNIIGSGGRRKIFENG-NLLISPV 648 (978)
Q Consensus 579 ~l~v~~~~p~~~~----~~~~~~~~~~~g~~~~l~C~~~-----~~p~~~i~W~~~g~~~~~~~~~~~~~~~-~l~i~~~ 648 (978)
.+.+.. .|.+.- ...+..+.+..-+...+.|... +.+.+.++|++................| .+++.++
T Consensus 412 ~l~vv~-~p~~~~s~~~~sap~~lv~~~~~srfi~~tw~~p~~~~g~i~~~~v~~~~~~~~rer~~~tss~g~~~tv~nl 490 (1381)
T KOG4221|consen 412 QLEVVP-QPASASSDLLPSAPRDLVANLVSSRFIQLTWRPPAQISGNISTYTVFYKVEGDVRERLQNTSSPGIQVTVQNL 490 (1381)
T ss_pred hheecc-CCcccccCccccCCcceecccccceeEEEeecCccccCCCcceEEEEEecCCchhhhheeccCCceEEEeeec
Confidence 886653 222211 1112233334444444555532 3344578888643322222222223334 2445555
Q ss_pred cCCCCEEEEEEEEeCCceeeeeEEEEEEeCCceeeeCCCceEEEccccEEEEEEeeecCCc--CeEEEEeeCCEEccccc
Q psy12060 649 SRDDSGIYSCTATNVHGMDESKGRLIVLHGPSYYEQLPPKITIAAHRNLQLRCSAHTEELL--DVAYIWTHNGVRIGNMD 726 (978)
Q Consensus 649 ~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~--~~~~~W~~~g~~~~~~~ 726 (978)
+..-...+.|.|.|..|...++..|.|..+|. .+. . ...+..-.+.|.+...+++ .-.++|++........
T Consensus 491 ~p~t~Y~~rv~A~n~~g~g~sS~pLkV~t~pE----gp~-~-~~a~ats~~ti~v~WepP~~~n~~I~~yk~~ys~~~~- 563 (1381)
T KOG4221|consen 491 SPLTMYFFRVRAKNEAGSGESSAPLKVTTQPE----GPV-Q-LQAYATSPTTILVTWEPPPFGNGPITGYKLFYSEDDT- 563 (1381)
T ss_pred ccceeEEEEEeccCcccCCccCCceEEecCCC----CCc-c-ccccccCcceEEEEecCCCCCCCCceEEEEEEEcCCC-
Confidence 55444445566779999999999999988776 111 1 3444455566777766654 1123788765443211
Q ss_pred cccccCCeeecCCceEEEeccCCCCCEEEEEEEEcCCCceeeeEEEEE---cCCCC-CCCceEEEEeeCCeeEEEeecCC
Q psy12060 727 LNELETPNINIDGGLLEITNASFADAGEYECVVKSTVGKISTKTTVIV---EGPPG-LPGGVQVVEVHKTSATIQWTDGA 802 (978)
Q Consensus 727 ~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~c~a~n~~G~~s~~~~l~v---~~~P~-~P~~~~~~~~~~~~v~l~W~~p~ 802 (978)
....++..+..+++|..+...+.+.|+|+|.|.+|...++..+.| .+.|+ ||.|+++...++++|+|.|.+|.
T Consensus 564 ---~~~~~~~~n~~e~ti~gL~k~TeY~~~vvA~N~~G~g~sS~~i~V~Tlsd~PsaPP~Nl~lev~sStsVrVsW~pP~ 640 (1381)
T KOG4221|consen 564 ---GKELRVENNATEYTINGLEKYTEYSIRVVAYNSAGSGVSSADITVRTLSDVPSAPPQNLSLEVVSSTSVRVSWLPPP 640 (1381)
T ss_pred ---CceEEEecCccEEEeecCCCccceEEEEEEecCCCCCCCCCceEEEeccCCCCCCCcceEEEecCCCeEEEEccCCC
Confidence 112344556679999999999999999999999997766665555 45565 45669999999999999999986
Q ss_pred C--CCCCceeEEEEEeeccc---cCceEecccccceeeeecCCceeeEEeeccCCCceeEEEEEEecCCccCCCCCCCCC
Q psy12060 803 T--NGRPITHYKIIARTNWN---STWFNVSEHVIGKEVDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPSPQ 877 (978)
Q Consensus 803 ~--~~~~i~~Y~v~~~~~~~---~~w~~~~~~~~~~~~~~~~~~~~~~~~~~L~p~~~Y~~~v~A~N~~G~g~~s~~~~~ 877 (978)
. .++.|++|.|.|+.... ..|..+.. ...++++.+ |+|++.|.|||.|.|..|.|++|+.. .
T Consensus 641 ~~t~ng~itgYkIRy~~~~~~~~~~~t~v~~-----------n~~~~l~~~-Lep~T~Y~vrIsa~t~nGtGpaS~w~-~ 707 (1381)
T KOG4221|consen 641 SETQNGQITGYKIRYRKLSREDEVNETVVKG-----------NTTQYLFNG-LEPNTQYRVRISAMTVNGTGPASEWV-S 707 (1381)
T ss_pred cccccceEEEEEEEecccCcccccceeeccc-----------chhhhHhhc-CCCCceEEEEEEEeccCCCCCcccce-e
Confidence 3 46789999999996543 22333221 356678888 99999999999999999999999988 6
Q ss_pred CCCCCCCC----CCCCCceeecccccCcEEEEEEeCCCCCCCCCcceEEEEEEecCCccceeeeeeeccceeEEEEEcCC
Q psy12060 878 YNTPADKP----YQAPSRIGGGGGKIGDLSISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETLKEYGNVGIAVVRIPS 953 (978)
Q Consensus 878 ~~t~~~~P----~~~P~~~~~~~~~~~si~v~W~~p~~~~~~g~i~~Y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 953 (978)
+.|++..+ +.+|..+.+. ...++|.++|+| |.+.+-.+.||+|.|+....... ...+.. +.+...+.|..
T Consensus 708 aeT~~~d~~e~vp~~ps~l~~~-~g~~si~vsW~P--p~~~~~~vrgY~ig~r~g~~~p~-~~tIrl--~~~~s~y~l~~ 781 (1381)
T KOG4221|consen 708 AETPESDLDERVPGKPSELHVH-PGSNSIVVSWTP--PPHPNIVVRGYKIGYRPGSGIPD-TGTIRL--DEKVSYYNLEQ 781 (1381)
T ss_pred ccCccccccccCCCCCceeeec-cCceeEEEEeCC--CCChhhhhcceEEeeecccCCCC-CccEEe--cceeeEEEEEe
Confidence 77765322 1456555554 345679999999 55677778999999974332221 112222 22334577999
Q ss_pred CCceeeEEEEEEEecCCCCCCCC
Q psy12060 954 EFYYTEYEVKVQAINDVGPGPES 976 (978)
Q Consensus 954 L~p~t~Y~~~V~A~n~~G~gp~S 976 (978)
|.|+.-|.|+++|+|..|.|.++
T Consensus 782 Le~~~~YvVkL~AfNn~gdG~p~ 804 (1381)
T KOG4221|consen 782 LEPNRDYVVKLRAFNNHGDGNPI 804 (1381)
T ss_pred cccCceEEEEEEEeccCCCCcce
Confidence 99999999999999999999875
No 5
>KOG4222|consensus
Probab=100.00 E-value=8.1e-63 Score=535.66 Aligned_cols=748 Identities=23% Similarity=0.336 Sum_probs=555.2
Q ss_pred CCCeeEeCCCceEecCCCccccCcEEEEEEeecCCCCeEEEEEcccccccccccccCCCCCCceEeecceEEEeCCC---
Q psy12060 188 RGPYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPR--- 264 (978)
Q Consensus 188 ~~P~~~~~p~~~~~~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~--- 264 (978)
.+|.|+..|.+.++..+ +.++|.|.+.|.|+|+|+|||+|.... .......|+.+.+|+|.+....
T Consensus 30 ~~p~iiehp~d~vvs~~-----~patlnc~asG~ppPti~w~k~G~~~~------~~e~~shR~~lp~gsLf~l~~ahg~ 98 (1281)
T KOG4222|consen 30 QPPRIIEHPHDLVVSKG-----EPATLNCKASGDPPPTIEWYKDGENVF------KGEPGSHRFLLPDGSLFLLRLAHGK 98 (1281)
T ss_pred CCCceEecchhhhccCC-----CCceeecCCCCCCCCceecccCCcccC------CCCCCCcceecCCccEEEEecccCC
Confidence 47899999999987554 459999999999999999999996431 1122456888889988876431
Q ss_pred -CCCCCeEEEEEEEeCceeEEeEEEEEEEeeec-ccccCCCCeeeecccCeEEEeCCCCCCCCceEEEeccccccccccc
Q psy12060 265 -QVEDRGSYHCKASNKFGSIISESVQLAFGFIG-EFNLKRAPEIGNQNWGKAMFCDPPTNYPGVNYYWARDYFPNFVEED 342 (978)
Q Consensus 265 -~~~d~G~Y~C~a~n~~g~~~s~~~~l~v~~~~-~~~~~~~~~~~~~~~~~~l~C~~~~~~p~~~i~W~~~~~~~~~~~~ 342 (978)
...|.|.|+|.|+|..|...|..+.|.+.... .|.+.+.......|+.++|.|..+.+.|.+.+.|.|||.++.....
T Consensus 99 ~a~~d~G~y~cvasn~~g~avSr~a~L~vavlrddfrv~prd~~~a~ge~avlEcgpP~ghpeptvSw~Kdg~pl~~~~~ 178 (1281)
T KOG4222|consen 99 KAGHDHGVYSCVASNRLGEAVSRGASLIVAVLRDDFRVSPRDVQAAVGEEAVLECGPPRGHPEPTVSWVKDGKPLDHYDV 178 (1281)
T ss_pred cccCCCceeEeeecCccceeeecCceEEEEEechhcccCcccccccccceeEEeccCCCCCCCCcceeecCCCccccccc
Confidence 24499999999999999999999999887665 4666666677778889999999999999999999999999765566
Q ss_pred ceEEEeeCCcEEEeeeeeecceeeEEEEEeecccccccCCceeEEEccCCCccccccCCCCCCCCCCCCCCCCcEEEEEE
Q psy12060 343 KRVFVSYDGALYFSALEQIDAGNYSCNVQSKVSDTGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPEAPKAGDKVRLECV 422 (978)
Q Consensus 343 ~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~n~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~v~~G~~~~l~C~ 422 (978)
.++.+..+|.|.|.+++.+|+|+|.|+++|.+|. +.+...+|.|.+.|.+.. ......|.+|..+.+.|.
T Consensus 179 ~~~~lisgG~LlIsnvrksD~GtY~CVatNmvG~--ReS~~A~lsv~e~P~f~~--------rp~~~~v~~g~~~~f~c~ 248 (1281)
T KOG4222|consen 179 PIIALISGGNLLISNVRKSDEGTYACVATNMVGE--RESIPARLSVQEKPWFWK--------RPKDLAVLVGAAAEFDCR 248 (1281)
T ss_pred eeEEEecCCcEEEeccccCCCceeeeeecccccc--cccccceeeeccCCcccc--------ccccceeecccccccccc
Confidence 6777778899999999999999999999999874 444557888888775432 122356788999999999
Q ss_pred EeecCCCeeEEEEcCccCCCCceeeecc-cEEEeCCCCCCCCeEEEEEEEeCCCceEEEEEEEEEeeceeeccCCccccc
Q psy12060 423 AFGYPVPSYNWTRRGSPLPRNAYFENFN-RILTIPNVKVEDQGEYICRASNDRSALESSVTISIQAEPNFTIPLTDKHMD 501 (978)
Q Consensus 423 ~~g~p~~~v~W~~~~~~l~~~~~~~~~~-~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~p~~~~~~~~~~~~ 501 (978)
+.|.|.|++.|.+++..++........+ .+|.|.+++..|.|.|.|.+.|..|.......|+|+.+|.|...+.+..+.
T Consensus 249 v~GdP~P~Vrwkk~~~~~P~~ry~i~~d~qtl~i~r~tp~deg~y~C~a~n~vG~l~asa~ltV~apP~f~kkp~dq~v~ 328 (1281)
T KOG4222|consen 249 VGGDPQPTVRWKKDDPSLPRSRYSILDDTQTLRIDRVTPTDEGTYVCPAENLVGGLEASATLTVQAPPSFGKKPRDQKVA 328 (1281)
T ss_pred cCCCCCCceeeeccCCCCCccceeeeeccccccccccCCCcccceeeeccccccccccccceEEecCcccccccCccccc
Confidence 9999999999999999998776655444 899999999999999999999999999999999999999999999999999
Q ss_pred CCCceeEEEEeecCCCCeeEEeECCEEC-CCCCCCCCCCCcEEE-ecCEEEEEeCCCCCCCeEEEEEEEcCCCceeeEEE
Q psy12060 502 NQADLTWTCEAFGVPDVTYSWFRNGELL-NSETLPLEDQDRYFI-QDNVLTIRYLNPERDPAMYQCRAKNQLKTRYSSAQ 579 (978)
Q Consensus 502 ~g~~~~l~C~~~~~p~~~i~W~~~g~~~-~~~~~~~~~~~~~~~-~~~~l~i~~~~~~~d~G~Y~C~a~n~~g~~~~~~~ 579 (978)
.|..++|.|.+.|.|.+.+.|.|.|... .....+...+.+..+ ..+.|+|.++.. .|.|.|.|...+..+.......
T Consensus 329 lg~~vt~pc~~~gnP~PavfW~keg~q~llf~~~p~~~~~r~svs~~g~L~it~v~~-~d~g~Yvcq~~~~~~ss~~~a~ 407 (1281)
T KOG4222|consen 329 LGGTVTFPCETLGNPPPAVFWLKEGSQDLLFSASPPSSNGRGSVSPTGTLTITNVRQ-SDEGYYVCQTQTSAGSSLTKAY 407 (1281)
T ss_pred cCceEEeeeecCCCCCcceEEeccCcceecccCCCCCcCccceecCCCCcccccccc-cccceEeeccccccccccccee
Confidence 9999999999999999999999976543 222122223333333 456899999997 9999999999888887766655
Q ss_pred EEEEEc----CCccccCCCCcceeecCCCeEEEEEeeccCCCCeeEEeeCCEEecCC-CcEEEeecCcEEEccccCCCCE
Q psy12060 580 LRVLTL----KPSFKKRPLESETYAGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSG-GRRKIFENGNLLISPVSRDDSG 654 (978)
Q Consensus 580 l~v~~~----~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~i~W~~~g~~~~~~-~~~~~~~~~~l~i~~~~~~d~G 654 (978)
+.+... .|.-++...+.+....++..+.|.|.+.+.|.+.+.|.++|-.+... .+..+...++|+|.+....|.|
T Consensus 408 ~~qt~~~~~~rPpp~i~~g~~nQtl~v~s~a~l~c~atg~P~p~i~wl~dg~~v~~~d~~~s~~~~~~l~i~dl~~~DtG 487 (1281)
T KOG4222|consen 408 LEQTDVLTDSRPPPIIEQGPANQTLPVGSTASLPCSATGAPTPNISWLKDGCNVMNPDSRISQQEIGSLRIRDLKGPDTG 487 (1281)
T ss_pred EEEEeeeccCCCCceeeecccccccccCcccccChhhhCCCCCCchhhhcccccccCCcccceeeeceeeeeeeecCCCc
Confidence 554431 22222222233444667999999999999999999999998776543 3444556688999999999999
Q ss_pred EEEEEEEeCCceeeeeEEEEEEeCCce-----------ee--eCCCceEEEccccEEEEEEeeec----CCcCeEEEEe-
Q psy12060 655 IYSCTATNVHGMDESKGRLIVLHGPSY-----------YE--QLPPKITIAAHRNLQLRCSAHTE----ELLDVAYIWT- 716 (978)
Q Consensus 655 ~Y~C~a~n~~g~~~~~~~l~v~~~p~~-----------~~--~~~~~~~~~~g~~~~l~C~~~~~----p~~~~~~~W~- 716 (978)
.|+|.|.+..|....++.|.|...-.. .. ...+.+.-..+..++|.|..... |.....+..+
T Consensus 488 ~YTc~as~~~ges~wSatl~v~~~~~s~q~~r~~D~S~~pS~p~~p~v~~v~~~~v~LsW~~~s~sg~vP~s~yiieafs 567 (1281)
T KOG4222|consen 488 RYTCIASDESGESTWSATLTVEKAGSSQQFCRCEDPSALPSPPGTPGVVNVSRTSVTLSWQPTSPSGAVPASGYIIEAFS 567 (1281)
T ss_pred ceeeeccCcccccccceeeEhhhcCcccccccCCChhhCCCCCCCCccccCCCceEEecccCCCCCCccccchhHHHHhh
Confidence 999999999999999999988652111 00 01122334456677777765432 1100100100
Q ss_pred eCCEEccccccccccCCeeecCCceEEEeccCCCCCEEEEEEEEcCCCceeee---EEEEEcCCCCCC------------
Q psy12060 717 HNGVRIGNMDLNELETPNINIDGGLLEITNASFADAGEYECVVKSTVGKISTK---TTVIVEGPPGLP------------ 781 (978)
Q Consensus 717 ~~g~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~c~a~n~~G~~s~~---~~l~v~~~P~~P------------ 781 (978)
.+-... ....--.....+..|..+....+..+.|++.|+.|-...+ -.++.. ++.+.
T Consensus 568 ~~~~et-------w~~ta~~v~~t~~~I~gL~P~~sylf~vRa~n~~Gis~Ps~~S~~vrta-~a~~~~a~ad~~k~~~~ 639 (1281)
T KOG4222|consen 568 PDLGET-------WQTTAGRVKTTTYAIRGLKPNLSYLFLVRAENEQGISDPSTSSDPVRTA-PADAAAAGADHQKVQRE 639 (1281)
T ss_pred hhhccc-------ccccccccccceeeecCcCccceeeeeeeccccccccCCcccCCccccC-CCChhhhhhhHHHHHHh
Confidence 000000 0001112245678899999999999999999999943221 112211 11111
Q ss_pred ---Cce---EEEEeeCCeeEEEeecCCCCC-CCceeEEEEEeeccc--cCceEecccccceeeeecCCceeeEEeeccCC
Q psy12060 782 ---GGV---QVVEVHKTSATIQWTDGATNG-RPITHYKIIARTNWN--STWFNVSEHVIGKEVDRYTGRKEASIENVLVP 852 (978)
Q Consensus 782 ---~~~---~~~~~~~~~v~l~W~~p~~~~-~~i~~Y~v~~~~~~~--~~w~~~~~~~~~~~~~~~~~~~~~~~~~~L~p 852 (978)
.-+ ......++++.+.|..+...+ .-|.+|.|.||..+. .+|....... .....+.+.+ |.|
T Consensus 640 ls~~l~~l~~~~~L~asslr~~w~~~kq~~~~~i~g~~I~~r~~~~~~a~~s~~~v~~--------~t~~s~v~~n-l~p 710 (1281)
T KOG4222|consen 640 LSNELLRLSNPNVLNASSLRLGWTKDKQHGSQYIQGYRISYRSLGSQLAQWSNAGVTV--------PTPESVVVPN-LKP 710 (1281)
T ss_pred hcccceeeccccccchhheeeeeeeecccCcccccceEEEeccCccccccccccceec--------cCCcceeccc-cCC
Confidence 011 123467889999999987654 478999999998765 4554433322 2345566777 999
Q ss_pred CceeEEEEEEecCCc---cCCCCCCCCCCCCCCCCCCCCCCce---eecccccCcEEEEEEeCCCCCCCCCcceEEEEEE
Q psy12060 853 WSTYEFKVIAGNELG---YGEPSSPSPQYNTPADKPYQAPSRI---GGGGGKIGDLSISWEPLPREKQNAPNIYYKIFWR 926 (978)
Q Consensus 853 ~~~Y~~~v~A~N~~G---~g~~s~~~~~~~t~~~~P~~~P~~~---~~~~~~~~si~v~W~~p~~~~~~g~i~~Y~i~~~ 926 (978)
++.|+|.++-.-..| .|.+|... .+.|.+++|..+|.++ +.-..+.+++.|+|.+||.+..||++++|.|...
T Consensus 711 ~t~ye~f~~Pf~~~~~s~~g~pS~sk-~alt~e~~PSapp~~~~~~s~~~~n~Ta~~Vsw~~pp~d~~ng~~qg~ki~~~ 789 (1281)
T KOG4222|consen 711 GTNYEFFVRPFFPHGYSIQGAPSNSK-TALTLEEPPSAPPQGVQHVSKGSYNGTAGSVSWAPPPADVQNGILQGYKIECS 789 (1281)
T ss_pred CccceeeccCccCCCcceecCCcccc-cccccccCCCCCCCCccccccccCCCceeeEEecCCcccccCCcccceeEEee
Confidence 999999999887755 44556554 6678899999999984 5556667899999999988999999999999775
Q ss_pred ecCCccceeeeeeeccceeEEEEEcCCCCceeeEEEEEEEecCCCCCCCCCC
Q psy12060 927 KKNDTEFQSETLKEYGNVGIAVVRIPSEFYYTEYEVKVQAINDVGPGPESEV 978 (978)
Q Consensus 927 ~~~~~~~~~~~~~~~~~~~~~~~~l~~L~p~t~Y~~~V~A~n~~G~gp~S~~ 978 (978)
...+...... ... +.+...++|.+|.++..|+|+|.|.|.+|.|+.+++
T Consensus 790 ~~e~tr~h~n-~t~--~a~~~sv~i~~l~~g~ay~vtv~a~T~aGvG~~s~p 838 (1281)
T KOG4222|consen 790 GGEKTRIHIN-KTT--NARTGSVTIGNLVTGIAYSVTVAARTGAGVGVKSPP 838 (1281)
T ss_pred cCcccccccc-ccc--cCCCCceEeccccccceEEEEEeeecCCccCCCCCC
Confidence 4332211111 111 123345678999999999999999999999998864
No 6
>KOG4222|consensus
Probab=100.00 E-value=1.3e-55 Score=479.59 Aligned_cols=630 Identities=26% Similarity=0.393 Sum_probs=492.9
Q ss_pred cCCCCeeeecccCeEEEeCCCCCCCCceEEEecccccccc-cccceEEEeeCCcEEEeeee-----eecceeeEEEEEee
Q psy12060 300 LKRAPEIGNQNWGKAMFCDPPTNYPGVNYYWARDYFPNFV-EEDKRVFVSYDGALYFSALE-----QIDAGNYSCNVQSK 373 (978)
Q Consensus 300 ~~~~~~~~~~~~~~~l~C~~~~~~p~~~i~W~~~~~~~~~-~~~~~~~~~~~~~L~i~~~~-----~~d~G~Y~C~~~n~ 373 (978)
..+....+..++.++|.|.+ .|.|+|+|+|+|+|..... ......++..+|+|.+..+- ..|.|.|+|.+.|.
T Consensus 36 ehp~d~vvs~~~patlnc~a-sG~ppPti~w~k~G~~~~~~e~~shR~~lp~gsLf~l~~ahg~~a~~d~G~y~cvasn~ 114 (1281)
T KOG4222|consen 36 EHPHDLVVSKGEPATLNCKA-SGDPPPTIEWYKDGENVFKGEPGSHRFLLPDGSLFLLRLAHGKKAGHDHGVYSCVASNR 114 (1281)
T ss_pred ecchhhhccCCCCceeecCC-CCCCCCceecccCCcccCCCCCCCcceecCCccEEEEecccCCcccCCCceeEeeecCc
Confidence 34455666777889999999 7889999999999964332 33445566778887776432 23899999999999
Q ss_pred cccccccCCceeEEEccCCCccccccCCCCCCCCCCCCCCCCcEEEEEEEe-ecCCCeeEEEEcCccCCCC--ce-eeec
Q psy12060 374 VSDTGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPEAPKAGDKVRLECVAF-GYPVPSYNWTRRGSPLPRN--AY-FENF 449 (978)
Q Consensus 374 ~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~v~~G~~~~l~C~~~-g~p~~~v~W~~~~~~l~~~--~~-~~~~ 449 (978)
.+..-.....+.+.|..... .+. .....+..|+.+.|+|.-. |.|.|.+.|.|+|.++... .. ....
T Consensus 115 ~g~avSr~a~L~vavlrddf--rv~-------prd~~~a~ge~avlEcgpP~ghpeptvSw~Kdg~pl~~~~~~~~~lis 185 (1281)
T KOG4222|consen 115 LGEAVSRGASLIVAVLRDDF--RVS-------PRDVQAAVGEEAVLECGPPRGHPEPTVSWVKDGKPLDHYDVPIIALIS 185 (1281)
T ss_pred cceeeecCceEEEEEechhc--ccC-------cccccccccceeEEeccCCCCCCCCcceeecCCCccccccceeEEEec
Confidence 88665555555555553221 111 1113456899999999754 8999999999999998722 22 2345
Q ss_pred ccEEEeCCCCCCCCeEEEEEEEeCCCceE-EEEEEEEEeeceeeccCCcccccCCCceeEEEEeecCCCCeeEEeECCEE
Q psy12060 450 NRILTIPNVKVEDQGEYICRASNDRSALE-SSVTISIQAEPNFTIPLTDKHMDNQADLTWTCEAFGVPDVTYSWFRNGEL 528 (978)
Q Consensus 450 ~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~-~~~~l~V~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~i~W~~~g~~ 528 (978)
++.|.|.+++.+|+|.|.|+++|..|... ....|.|.++|.+...+.+..+..|..+.+.|.+.|.|.+++.|.|++..
T Consensus 186 gG~LlIsnvrksD~GtY~CVatNmvG~ReS~~A~lsv~e~P~f~~rp~~~~v~~g~~~~f~c~v~GdP~P~Vrwkk~~~~ 265 (1281)
T KOG4222|consen 186 GGNLLISNVRKSDEGTYACVATNMVGERESIPARLSVQEKPWFWKRPKDLAVLVGAAAEFDCRVGGDPQPTVRWKKDDPS 265 (1281)
T ss_pred CCcEEEeccccCCCceeeeeecccccccccccceeeeccCCccccccccceeecccccccccccCCCCCCceeeeccCCC
Confidence 67899999999999999999999999864 56899999999999999999999999999999999999999999997776
Q ss_pred CCCCCCCCCCCCcEEE--ecCEEEEEeCCCCCCCeEEEEEEEcCCCceeeEEEEEEEEcCCccccCCCCcceeecCCCeE
Q psy12060 529 LNSETLPLEDQDRYFI--QDNVLTIRYLNPERDPAMYQCRAKNQLKTRYSSAQLRVLTLKPSFKKRPLESETYAGEGGNV 606 (978)
Q Consensus 529 ~~~~~~~~~~~~~~~~--~~~~l~i~~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~~p~~~~~~~~~~~~~~~g~~~ 606 (978)
++. .++.+ ...+|.|..+++ .|.|.|.|.+.|..|.....+.+.|.. +|.|...+.... +..|..+
T Consensus 266 ~P~--------~ry~i~~d~qtl~i~r~tp-~deg~y~C~a~n~vG~l~asa~ltV~a-pP~f~kkp~dq~--v~lg~~v 333 (1281)
T KOG4222|consen 266 LPR--------SRYSILDDTQTLRIDRVTP-TDEGTYVCPAENLVGGLEASATLTVQA-PPSFGKKPRDQK--VALGGTV 333 (1281)
T ss_pred CCc--------cceeeeeccccccccccCC-CcccceeeeccccccccccccceEEec-CcccccccCccc--cccCceE
Confidence 652 23333 336899999987 899999999999999999999999985 788887776554 6789999
Q ss_pred EEEEeeccCCCCeeEEeeCCEEe--------cCCCcEEEeecCcEEEccccCCCCEEEEEEEEeCCceeeeeEEEEEEe-
Q psy12060 607 TIFCNPEAAPKPKFVWKKDGNII--------GSGGRRKIFENGNLLISPVSRDDSGIYSCTATNVHGMDESKGRLIVLH- 677 (978)
Q Consensus 607 ~l~C~~~~~p~~~i~W~~~g~~~--------~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~- 677 (978)
+|.|.+.|.|.|.+.|.+.|... ....+..+...++|+|.+++..|.|.|.|...+..|.......+.+..
T Consensus 334 t~pc~~~gnP~PavfW~keg~q~llf~~~p~~~~~r~svs~~g~L~it~v~~~d~g~Yvcq~~~~~~ss~~~a~~~qt~~ 413 (1281)
T KOG4222|consen 334 TFPCETLGNPPPAVFWLKEGSQDLLFSASPPSSNGRGSVSPTGTLTITNVRQSDEGYYVCQTQTSAGSSLTKAYLEQTDV 413 (1281)
T ss_pred EeeeecCCCCCcceEEeccCcceecccCCCCCcCccceecCCCCcccccccccccceEeecccccccccccceeEEEEee
Confidence 99999999999999999977532 233455667778999999999999999999999888887776666543
Q ss_pred -----CCceeeeCCCceEEEccccEEEEEEeeecCCcCeEEEEeeCCEEccccccccccCCeeecCCceEEEeccCCCCC
Q psy12060 678 -----GPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEITNASFADA 752 (978)
Q Consensus 678 -----~p~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~~~W~~~g~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~ 752 (978)
+|.++...+.+.+...+..+.|.|.+.+.|.+.+ .|.++|-.+...+ ........++|+|.++...|.
T Consensus 414 ~~~~rPpp~i~~g~~nQtl~v~s~a~l~c~atg~P~p~i--~wl~dg~~v~~~d-----~~~s~~~~~~l~i~dl~~~Dt 486 (1281)
T KOG4222|consen 414 LTDSRPPPIIEQGPANQTLPVGSTASLPCSATGAPTPNI--SWLKDGCNVMNPD-----SRISQQEIGSLRIRDLKGPDT 486 (1281)
T ss_pred eccCCCCceeeecccccccccCcccccChhhhCCCCCCc--hhhhcccccccCC-----cccceeeeceeeeeeeecCCC
Confidence 5566666666667777999999999999998766 8999987765432 111222347899999999999
Q ss_pred EEEEEEEEcCCCceeeeEEEEEcC---------------CCCCCCceEEEEeeCCeeEEEeecCCC-CCCCceeEEEEEe
Q psy12060 753 GEYECVVKSTVGKISTKTTVIVEG---------------PPGLPGGVQVVEVHKTSATIQWTDGAT-NGRPITHYKIIAR 816 (978)
Q Consensus 753 g~Y~c~a~n~~G~~s~~~~l~v~~---------------~P~~P~~~~~~~~~~~~v~l~W~~p~~-~~~~i~~Y~v~~~ 816 (978)
|.|+|.|.+..|+.+-++.|.|.. .|++|....+..++.++++|+|.++.. +..|+.+|++++.
T Consensus 487 G~YTc~as~~~ges~wSatl~v~~~~~s~q~~r~~D~S~~pS~p~~p~v~~v~~~~v~LsW~~~s~sg~vP~s~yiieaf 566 (1281)
T KOG4222|consen 487 GRYTCIASDESGESTWSATLTVEKAGSSQQFCRCEDPSALPSPPGTPGVVNVSRTSVTLSWQPTSPSGAVPASGYIIEAF 566 (1281)
T ss_pred cceeeeccCcccccccceeeEhhhcCcccccccCCChhhCCCCCCCCccccCCCceEEecccCCCCCCccccchhHHHHh
Confidence 999999999999998888888853 356777778889999999999999876 4579999999865
Q ss_pred e-ccccCceEecccccceeeeecCCceeeEEeeccCCCceeEEEEEEecCCccCCCCCCCCCCCCCCCCCCCCCC-----
Q psy12060 817 T-NWNSTWFNVSEHVIGKEVDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPSPQYNTPADKPYQAPS----- 890 (978)
Q Consensus 817 ~-~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~L~p~~~Y~~~v~A~N~~G~g~~s~~~~~~~t~~~~P~~~P~----- 890 (978)
. .-...|...... ...+.+.|.+ |+|.+.|.|.|+|.|+.|.+.++..+..++|.+..+..+=.
T Consensus 567 s~~~~etw~~ta~~---------v~~t~~~I~g-L~P~~sylf~vRa~n~~Gis~Ps~~S~~vrta~a~~~~a~ad~~k~ 636 (1281)
T KOG4222|consen 567 SPDLGETWQTTAGR---------VKTTTYAIRG-LKPNLSYLFLVRAENEQGISDPSTSSDPVRTAPADAAAAGADHQKV 636 (1281)
T ss_pred hhhhcccccccccc---------cccceeeecC-cCccceeeeeeeccccccccCCcccCCccccCCCChhhhhhhHHHH
Confidence 4 344677765443 3567889999 99999999999999999999999988888887654422110
Q ss_pred -------c---eeecccccCcEEEEEEeCCCCCCCCCcceEEEEEEecCC--ccceeeeeeeccceeEEEEEcCCCCcee
Q psy12060 891 -------R---IGGGGGKIGDLSISWEPLPREKQNAPNIYYKIFWRKKND--TEFQSETLKEYGNVGIAVVRIPSEFYYT 958 (978)
Q Consensus 891 -------~---~~~~~~~~~si~v~W~~p~~~~~~g~i~~Y~i~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~~L~p~t 958 (978)
. .....++.++|.+.|.. +...+-+-|.+|+|.||..+. .+|....+..... ..+.+.+|+|++
T Consensus 637 ~~~ls~~l~~l~~~~~L~asslr~~w~~-~kq~~~~~i~g~~I~~r~~~~~~a~~s~~~v~~~t~---~s~v~~nl~p~t 712 (1281)
T KOG4222|consen 637 QRELSNELLRLSNPNVLNASSLRLGWTK-DKQHGSQYIQGYRISYRSLGSQLAQWSNAGVTVPTP---ESVVVPNLKPGT 712 (1281)
T ss_pred HHhhcccceeeccccccchhheeeeeee-ecccCcccccceEEEeccCccccccccccceeccCC---cceeccccCCCc
Confidence 1 12345667899999998 456667889999999998874 4566555544322 346688999999
Q ss_pred eEEEEEEEecCCCC
Q psy12060 959 EYEVKVQAINDVGP 972 (978)
Q Consensus 959 ~Y~~~V~A~n~~G~ 972 (978)
+|+|.++.+...|.
T Consensus 713 ~ye~f~~Pf~~~~~ 726 (1281)
T KOG4222|consen 713 NYEFFVRPFFPHGY 726 (1281)
T ss_pred cceeeccCccCCCc
Confidence 99999999887554
No 7
>KOG3515|consensus
Probab=100.00 E-value=3.7e-31 Score=286.75 Aligned_cols=685 Identities=16% Similarity=0.182 Sum_probs=418.0
Q ss_pred CccccCcEEEEEEeecCCC-CeEEEEEcccccccccccccCCCCCCceEeecceEEEeCCCCCCCCeEEEEEEEeCceeE
Q psy12060 205 KRSILNDITLSCYAGGYPN-PSYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVEDRGSYHCKASNKFGSI 283 (978)
Q Consensus 205 ~~~~g~~~~l~C~~~g~p~-~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~d~G~Y~C~a~n~~g~~ 283 (978)
+.+.|++|.|.|.+.++|+ +.|.||+.+..+. .....+.+.+|..... ..+.-+.|.|+|.|..|..
T Consensus 18 ~~~~g~~v~l~C~v~~~pp~~~~eW~h~~~~~~-----------~~~~~~~~~~~~~~~~-~~~~~~~~~c~a~ns~~~~ 85 (741)
T KOG3515|consen 18 GLRLGEDVPLPCRVNSNPPEIDVEWYHSTSGEH-----------GRYATIADPTLVTTGD-VRDTVAELNCRAFNSVGMP 85 (741)
T ss_pred hhccCCcceeeeecCCCCCCcceEEEecCcccc-----------cccccccCCceeeecc-hhhhhhhhhhhhcccccCc
Confidence 4567999999999986555 6999999985431 2233345667777775 6788899999999998887
Q ss_pred EeEEEEEEEeeecccccCCCCeeeecccCeEEEe-CCCCCCCCceEEEecccccccccccceEEE---------eeCCcE
Q psy12060 284 ISESVQLAFGFIGEFNLKRAPEIGNQNWGKAMFC-DPPTNYPGVNYYWARDYFPNFVEEDKRVFV---------SYDGAL 353 (978)
Q Consensus 284 ~s~~~~l~v~~~~~~~~~~~~~~~~~~~~~~l~C-~~~~~~p~~~i~W~~~~~~~~~~~~~~~~~---------~~~~~L 353 (978)
....+.+.+.+++.-...........+..+.+.| ....+.|.+.++|+.++............+ .....|
T Consensus 86 ~~~~~~l~v~~~pa~~~~~~e~~~~~~~vvqi~c~~~~~~~P~~nlrW~~n~r~e~~~~~~~~~~~~~a~gss~t~~s~l 165 (741)
T KOG3515|consen 86 SRCPMILDVDYPPACLPELGEIFQVDKGVVQIICSAKVAGRPNPNLRWGFNNRAELNAVNQRGRVGAGALGSSYTEPSLL 165 (741)
T ss_pred eecceeeccccCccccccccchhhhcCCeEEEEEeecCCCCCCcceeeeeccEEeecccCCcccccccccCceeccccce
Confidence 7777888888877544333333444566678888 445778889999999865433222111111 123458
Q ss_pred EEeeeeeecceeeEEEEEeecccccccCCceeEEEccCCCccccccCCCCCCCCCCCCCCCCcEEEEEEEe-ecCCCeeE
Q psy12060 354 YFSALEQIDAGNYSCNVQSKVSDTGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPEAPKAGDKVRLECVAF-GYPVPSYN 432 (978)
Q Consensus 354 ~i~~~~~~d~G~Y~C~~~n~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~v~~G~~~~l~C~~~-g~p~~~v~ 432 (978)
++...+.+|.|.|+|.|.+.............+.|..+.....+..... -+.+.+|+.+.|.|.+. |+|.++++
T Consensus 166 ~~~v~Rka~~g~~tC~A~nr~s~~l~~~~~~~i~v~~~~~~~~~~~~~~-----~qsF~~g~~inlvc~~~gg~P~~~~~ 240 (741)
T KOG3515|consen 166 KQTVSRKADNGNYTCPANNRNSPGLSFAKQLTIIVEAPCKGIGITGAQE-----QQSFTEGQTINLVCNAQGGNPSQQQT 240 (741)
T ss_pred eeEEEEecCCceeEcccccccCccccccceeEeecccccccceecchhh-----cCcccccceEEEEehhhcCCcchhhh
Confidence 8999999999999999998654334444445566655543333222211 14567999999999776 69999999
Q ss_pred EEEcCccCCCCceeee------cccEEEeCCCCCCCCeEEEEEEEeCCCceEEEEEEEEEeecee-eccCCcccccCCCc
Q psy12060 433 WTRRGSPLPRNAYFEN------FNRILTIPNVKVEDQGEYICRASNDRSALESSVTISIQAEPNF-TIPLTDKHMDNQAD 505 (978)
Q Consensus 433 W~~~~~~l~~~~~~~~------~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~p~~-~~~~~~~~~~~g~~ 505 (978)
|+++...+........ ....+.+..-...+.-...|.+.| ....+..+.|..+|.- .+......+..|+.
T Consensus 241 w~~~s~~~~~~sl~~~~~sg~~v~~~~~~~~~r~~~~~~~kc~a~n---~~~~~~~tav~~~~~~~~Ist~~~~ls~g~s 317 (741)
T KOG3515|consen 241 WYKDSRPQSESSLLSQEPSGDTVSSTLVLRVGRQDLQAQLKCKASN---LLAASQITAVQVKPTAVPISTSDSGLSSGRS 317 (741)
T ss_pred hccccccchhhhcccCCCCCCcccccccccccccchhhhhhccccC---ccccceeeecccccccccccCcccccccccc
Confidence 9999887755422111 122344444444445567799998 2233344455555542 22334445889999
Q ss_pred eeEEEEee-cCCCCeeEEeECCEECCCCC-CCCCCCCcEEEecCEEEEEeCCCCCCCeEEEEEEEcCCCceeeEEEEEEE
Q psy12060 506 LTWTCEAF-GVPDVTYSWFRNGELLNSET-LPLEDQDRYFIQDNVLTIRYLNPERDPAMYQCRAKNQLKTRYSSAQLRVL 583 (978)
Q Consensus 506 ~~l~C~~~-~~p~~~i~W~~~g~~~~~~~-~~~~~~~~~~~~~~~l~i~~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~ 583 (978)
..+.|... +.|.+.+.|+|+........ ..........+....+.+.... ..|.|.|+|.+.+.......+..+.+.
T Consensus 318 ~r~~c~~sss~p~~~i~w~~~~~~~~~~~~~~~~t~~~~~v~~~~~~~q~~~-~~~~g~v~c~a~~~~~~~~sss~~~l~ 396 (741)
T KOG3515|consen 318 ARSSCVSSSSKPPAHIAWYKDTKMPKGSQKASSKTSNMGGVAVISHYAQPSS-QQDGGQVTCPADNLELAHSSSSSFLLP 396 (741)
T ss_pred cccceeccCCCCccceeeeccCcccccccCcccCCCcccceeeEEeeecccc-hhcCceEEccccccccccccccceecc
Confidence 99999865 55889999999665443221 1111111112222233344444 489999999999877554444444433
Q ss_pred Ec-CCccccCCCCcceeecCCCeEEEEEeeccCC-CCeeEEeeCCEEecCCCc--EEEee-cCcEEEccccCCCCEEEEE
Q psy12060 584 TL-KPSFKKRPLESETYAGEGGNVTIFCNPEAAP-KPKFVWKKDGNIIGSGGR--RKIFE-NGNLLISPVSRDDSGIYSC 658 (978)
Q Consensus 584 ~~-~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~p-~~~i~W~~~g~~~~~~~~--~~~~~-~~~l~i~~~~~~d~G~Y~C 658 (978)
.. +|.+.... .......+++.....-.+.+.| .+++.|.+++..+..... ..+.. .+...+.++.+.|.|.|.|
T Consensus 397 ~l~~p~~L~~~-~~~v~~~e~d~~~~~~~~~~~p~~~~~~w~~~~~~~~~~~g~~~~v~~~~~~~s~~~v~~~d~g~y~~ 475 (741)
T KOG3515|consen 397 VLPSPAFLVRH-KTAVVAMEQDHQAAPLPVRGAPAERTFYWTFRLYKLSQVDGGVVRVGAGAGLGSGVNVSRSDGGSYGL 475 (741)
T ss_pred ccCCchhhhhc-ccceeeccCccccccCcccCCCcccchhheecceecccccCceEEeeccccccccceeeeccCCccee
Confidence 33 34443332 2333344555554444444655 458999998877765433 22222 2234577799999999999
Q ss_pred EEEeCCceeeeeEEEEEEeCCceeeeCCCceEEEccccEEEEEEeeecCCcCeEEEEeeCCEEccccccccccCCeeecC
Q psy12060 659 TATNVHGMDESKGRLIVLHGPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINID 738 (978)
Q Consensus 659 ~a~n~~g~~~~~~~l~v~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~~~W~~~g~~~~~~~~~~~~~~~~~~~ 738 (978)
.+.|..|.......+.+...|.... ..+......++++.+.|.....+...-.+.|.+.+.+.... +...........
T Consensus 476 tatns~gg~~~~~~~~~~~sp~~~~-~~~~~~~~~~ns~~~~~~q~~~~~~~~m~~~~r~ge~~~~~-~~~~~~~~~~~~ 553 (741)
T KOG3515|consen 476 TATNSPGGAQAYLLLGVHTSPHNHH-LQDQVEGATGNSVDGECMQDEQPQDQQMHHEPRSGEPPSDQ-IDQDAPQQQLMA 553 (741)
T ss_pred eeccCCCceeeEEeeccccCCcccc-cccccccCCCCcccceeeccccccchhhhcccccCCCCccc-ccccccccccCC
Confidence 9999999988877777777666443 33445566677799999999988777788999988776431 111111111223
Q ss_pred CceEEEeccCCCCCEEEEEEEEcCCC-ceeeeEEEEEcCCCC---CCCceEEEEeeCCeeEEEeecCCCCCCCceeEEEE
Q psy12060 739 GGLLEITNASFADAGEYECVVKSTVG-KISTKTTVIVEGPPG---LPGGVQVVEVHKTSATIQWTDGATNGRPITHYKII 814 (978)
Q Consensus 739 ~~~l~i~~~~~~d~g~Y~c~a~n~~G-~~s~~~~l~v~~~P~---~P~~~~~~~~~~~~v~l~W~~p~~~~~~i~~Y~v~ 814 (978)
...+.+.......++.|.|.+.+ .+ .+.....+.+..++. .+.++.......-.+..+.. -.+.+...|...
T Consensus 554 ~a~~~~~~~~~~~~~~~~~~~d~-~~~pA~~~~~l~~~s~~~v~~~tp~~~~~~~g~v~as~~~~---a~~~~~~~~~~~ 629 (741)
T KOG3515|consen 554 HAQLLVSGNSSLQASETACVVDG-SSPPAGLSLVLKAYSALIVTVRTPNMYTAQEGCVNASDDCV---ASGVPSTSFTTA 629 (741)
T ss_pred ccceeecccccccccceEEeecC-CCCccccceEEEecccccccccCCceeeeccCcccccccce---ecccccceeecc
Confidence 45677777777788999999988 33 222333344333321 11233222111112222210 112222223322
Q ss_pred Eeeccc--cCceEecccccceeeeecCCceeeEEeeccCCCceeEEEEEEecCCccCCCCCCCCCCCCCCCCCCCCCCce
Q psy12060 815 ARTNWN--STWFNVSEHVIGKEVDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPSPQYNTPADKPYQAPSRI 892 (978)
Q Consensus 815 ~~~~~~--~~w~~~~~~~~~~~~~~~~~~~~~~~~~~L~p~~~Y~~~v~A~N~~G~g~~s~~~~~~~t~~~~P~~~P~~~ 892 (978)
..+... ......... ... .....+..+.+ -.++..|.+.|.+.|..|.++.+-.+. ...-+..|.|+
T Consensus 630 k~p~~~~~~~~~~~~~~---~~~--~~~s~~~~~~~-~~~~~~y~~~c~t~n~lg~~~v~~~~~-----~~t~~~~~~n~ 698 (741)
T KOG3515|consen 630 KTPLQTTEGPHIREKAT---QQG--QTHSSSEWILN-HIDGSDYENGCTTQNLLGSDHVSGAIH-----SGTASVGPINL 698 (741)
T ss_pred cCCCcccCCceEEEeee---ecc--ccccccccccC-CcchhhhcceeeecccCCCccccceec-----CCcCCCCccce
Confidence 211100 000000000 000 01122233445 677889999999999999998776542 22223678899
Q ss_pred eecccccCcEEEEEEeCCCCCCCCCcceEEEEEEecCCc
Q psy12060 893 GGGGGKIGDLSISWEPLPREKQNAPNIYYKIFWRKKNDT 931 (978)
Q Consensus 893 ~~~~~~~~si~v~W~~p~~~~~~g~i~~Y~i~~~~~~~~ 931 (978)
++......+|.|.|.| ...+|--++|.+.|.+.+..
T Consensus 699 ~~~~~~~~~i~l~~~p---~fdgg~~q~f~~~~~~~~~~ 734 (741)
T KOG3515|consen 699 TYDNLTYSTISLEWMP---GFDGGLQQRFFLKYYDLGTM 734 (741)
T ss_pred Eeeeeeeeeeceeeee---ccccccccceeeehhhcCCc
Confidence 9999999999999997 55667778999988876643
No 8
>KOG4194|consensus
Probab=99.97 E-value=3.3e-29 Score=255.98 Aligned_cols=285 Identities=22% Similarity=0.366 Sum_probs=222.9
Q ss_pred CCeeEeCCCceEecCCCccccCcEEEEEEeec--CCCCeEEEEEcccccccccccccCC-CCC------CceEeecceEE
Q psy12060 189 GPYFIKQPTDVVFDLSKRSILNDITLSCYAGG--YPNPSYEWFKEDYVQDRLVANLIDP-LSD------KRFTLSGGNLI 259 (978)
Q Consensus 189 ~P~~~~~p~~~~~~~~~~~~g~~~~l~C~~~g--~p~~~v~W~~~~~~~~~~~~~~~~~-~~~------~~~~~~~~~l~ 259 (978)
.|.|..+|...... .|++++|+|.+.+ .-+-++.|.||+....+........ ... .......+.|.
T Consensus 503 kpqI~~qPe~~~al-----~g~nirftC~a~sssasplsi~WR~dnevq~rv~ved~a~~~~q~r~~~~~e~~~~~~~L~ 577 (873)
T KOG4194|consen 503 KPQIVTQPETVSAL-----IGENIRFTCNAYSSSASPLSIEWRKDNEVQPRVDVEDFATFLSQNRNGTFGEREEYTAILH 577 (873)
T ss_pred CcceecCchHhhhh-----hccceEEEEEeccCCCCCceeEeeeccccCcccchhcchhhhhhhccCccchhhhhhheee
Confidence 47788888777643 4677999999975 3345999999986332211110000 000 11112245688
Q ss_pred EeCCCCCCCCeEEEEEEEeCceeEEeEEEEEEEeeecccccCCCCeeeecccCeEEEeCCCCCCCCceEEEecccccccc
Q psy12060 260 INDPRQVEDRGSYHCKASNKFGSIISESVQLAFGFIGEFNLKRAPEIGNQNWGKAMFCDPPTNYPGVNYYWARDYFPNFV 339 (978)
Q Consensus 260 i~~~~~~~d~G~Y~C~a~n~~g~~~s~~~~l~v~~~~~~~~~~~~~~~~~~~~~~l~C~~~~~~p~~~i~W~~~~~~~~~ 339 (978)
+.++ ...|.|.|+|+++|..|+..|..++++|...|.|...+...+...|+-+.|.|.+ .|.|.|+|.|-|+|...+.
T Consensus 578 L~nV-t~td~grYQCVvtN~FGStysqk~KltV~~~PsFtktP~dltl~tg~mArl~CaA-tG~P~PeIawqkdggtdFP 655 (873)
T KOG4194|consen 578 LDNV-TFTDEGRYQCVVTNHFGSTYSQKAKLTVNQAPSFTKTPEDLTLRTGQMARLECAA-TGHPRPEIAWQKDGGTDFP 655 (873)
T ss_pred eeee-ecccCceEEEEEecccCcchhheeEEEeeccCccccCcccceeecccceeeeeec-cCCCCcceeehhcCCCCCc
Confidence 8897 8999999999999999999999999999999999999999999999999999998 7999999999999877443
Q ss_pred -cccceEEEeeC-CcEEEeeeeeecceeeEEEEEeecccccccCCceeEEEccCCCccccccCCCCCCCCCCCCCCCCcE
Q psy12060 340 -EEDKRVFVSYD-GALYFSALEQIDAGNYSCNVQSKVSDTGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPEAPKAGDKV 417 (978)
Q Consensus 340 -~~~~~~~~~~~-~~L~i~~~~~~d~G~Y~C~~~n~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~v~~G~~~ 417 (978)
....|+.+..+ ..+.|.+++.+|.|.|+|.|.|.+|.... ..+|.|.+.|.+... ..+..|..|+++
T Consensus 656 AA~eRRl~Vmpedd~f~Itnvk~eD~GiYtC~A~n~AG~isa---nAtL~V~e~p~f~~P--------L~~~~V~~get~ 724 (873)
T KOG4194|consen 656 AARERRLHVMPEDDVFFITNVKIEDQGIYTCTAQNVAGQISA---NATLTVLETPSFSIP--------LEDQLVVVGETL 724 (873)
T ss_pred hhhhheeeecCCCCEEEEecccccccceeEEeeeccccceee---ceEEEEecCCccccc--------ccceEEEecceE
Confidence 34456666654 56999999999999999999999875543 378999988754321 234678899999
Q ss_pred EEEEEEeecCC-CeeEEEEcCccCCCCc--eeeecccEEEeCCCCCCCCeEEEEEEEeCCCceEEEEEEEEEeecee
Q psy12060 418 RLECVAFGYPV-PSYNWTRRGSPLPRNA--YFENFNRILTIPNVKVEDQGEYICRASNDRSALESSVTISIQAEPNF 491 (978)
Q Consensus 418 ~l~C~~~g~p~-~~v~W~~~~~~l~~~~--~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~p~~ 491 (978)
.|.|.+.|.|+ |.+.|+|++++|.-.. .+...+..|.+.+...+|+|.|+|...+..|.....+.+.|..++..
T Consensus 725 vlqC~a~~~~a~pr~~W~k~d~pil~t~rh~f~d~dQllvv~~~~~~daG~yTcem~~~~~~~~~~i~l~~~~~~~~ 801 (873)
T KOG4194|consen 725 VLQCLAEGAPADPRLEWFKEDKPILITERHTFPDGDQLLVVKENLVEDAGIYTCEMSNTLGTERIHICLLVYQKKKC 801 (873)
T ss_pred EEEEecCCCCCCccccccCCCCceEEeecccCCCCCeEEEEEehhhhhcceEEEEEEeeccceeeEEEEEEeecCCc
Confidence 99999999887 8999999999985443 45666788999999999999999999999998888877777766543
No 9
>KOG4194|consensus
Probab=99.97 E-value=1.2e-28 Score=252.07 Aligned_cols=286 Identities=24% Similarity=0.441 Sum_probs=223.3
Q ss_pred CCCCCcEEEEEEEee--cCCCeeEEEEcCccCCCCc-----ee------------eecccEEEeCCCCCCCCeEEEEEEE
Q psy12060 411 PKAGDKVRLECVAFG--YPVPSYNWTRRGSPLPRNA-----YF------------ENFNRILTIPNVKVEDQGEYICRAS 471 (978)
Q Consensus 411 v~~G~~~~l~C~~~g--~p~~~v~W~~~~~~l~~~~-----~~------------~~~~~~L~i~~~~~~d~G~Y~C~a~ 471 (978)
+..|+.++|+|.+.+ ..+.++.|.++++.++.-. .+ ......|.+.+|+..|+|.|+|+++
T Consensus 515 al~g~nirftC~a~sssasplsi~WR~dnevq~rv~ved~a~~~~q~r~~~~~e~~~~~~~L~L~nVt~td~grYQCVvt 594 (873)
T KOG4194|consen 515 ALIGENIRFTCNAYSSSASPLSIEWRKDNEVQPRVDVEDFATFLSQNRNGTFGEREEYTAILHLDNVTFTDEGRYQCVVT 594 (873)
T ss_pred hhhccceEEEEEeccCCCCCceeEeeeccccCcccchhcchhhhhhhccCccchhhhhhheeeeeeeecccCceEEEEEe
Confidence 468999999999976 4445899999887543211 00 1123569999999999999999999
Q ss_pred eCCCce-EEEEEEEEEeeceeeccCCcccccCCCceeEEEEeecCCCCeeEEeECCEE-CCCCCCCCCCCCcEEE--ecC
Q psy12060 472 NDRSAL-ESSVTISIQAEPNFTIPLTDKHMDNQADLTWTCEAFGVPDVTYSWFRNGEL-LNSETLPLEDQDRYFI--QDN 547 (978)
Q Consensus 472 n~~g~~-~~~~~l~V~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~i~W~~~g~~-~~~~~~~~~~~~~~~~--~~~ 547 (978)
|..|+. +..+.|+|...|.|...|.+.++..|+.+.|.|.++|.|.|+|.|.|+|.. .+.. ...|..+ .+.
T Consensus 595 N~FGStysqk~KltV~~~PsFtktP~dltl~tg~mArl~CaAtG~P~PeIawqkdggtdFPAA-----~eRRl~Vmpedd 669 (873)
T KOG4194|consen 595 NHFGSTYSQKAKLTVNQAPSFTKTPEDLTLRTGQMARLECAATGHPRPEIAWQKDGGTDFPAA-----RERRLHVMPEDD 669 (873)
T ss_pred cccCcchhheeEEEeeccCccccCcccceeecccceeeeeeccCCCCcceeehhcCCCCCchh-----hhheeeecCCCC
Confidence 999985 567999999999999999999999999999999999999999999998765 4432 2233322 566
Q ss_pred EEEEEeCCCCCCCeEEEEEEEcCCCceeeEEEEEEEEcCCccccCCCCcceeecCCCeEEEEEeeccCCC-CeeEEeeCC
Q psy12060 548 VLTIRYLNPERDPAMYQCRAKNQLKTRYSSAQLRVLTLKPSFKKRPLESETYAGEGGNVTIFCNPEAAPK-PKFVWKKDG 626 (978)
Q Consensus 548 ~l~i~~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~-~~i~W~~~g 626 (978)
.+.|.++.. +|.|.|+|.|.|..|.....+.+.|.+ .|.+..+. ....+..|+++.|.|.+.+.|+ |.+.|+|++
T Consensus 670 ~f~Itnvk~-eD~GiYtC~A~n~AG~isanAtL~V~e-~p~f~~PL--~~~~V~~get~vlqC~a~~~~a~pr~~W~k~d 745 (873)
T KOG4194|consen 670 VFFITNVKI-EDQGIYTCTAQNVAGQISANATLTVLE-TPSFSIPL--EDQLVVVGETLVLQCLAEGAPADPRLEWFKED 745 (873)
T ss_pred EEEEecccc-cccceeEEeeeccccceeeceEEEEec-CCcccccc--cceEEEecceEEEEEecCCCCCCccccccCCC
Confidence 899999997 999999999999999999999999986 45555443 2334788999999999999987 899999999
Q ss_pred EEecCCCcEEEeecCc-EEEccccCCCCEEEEEEEEeCCceeeeeEEEEEEeCCceeeeCCCceEEEccccEEEEEEeee
Q psy12060 627 NIIGSGGRRKIFENGN-LLISPVSRDDSGIYSCTATNVHGMDESKGRLIVLHGPSYYEQLPPKITIAAHRNLQLRCSAHT 705 (978)
Q Consensus 627 ~~~~~~~~~~~~~~~~-l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~ 705 (978)
+++.-..+.....+.. |.+.+...+|+|.|+|+..|..|.......+.+...+..........++..-..+.+.|.+..
T Consensus 746 ~pil~t~rh~f~d~dQllvv~~~~~~daG~yTcem~~~~~~~~~~i~l~~~~~~~~~~Se~~~Tq~~~riia~vs~~vd~ 825 (873)
T KOG4194|consen 746 KPILITERHTFPDGDQLLVVKENLVEDAGIYTCEMSNTLGTERIHICLLVYQKKKCRMSEDGSTQVGIRIIAVVSCSVDT 825 (873)
T ss_pred CceEEeecccCCCCCeEEEEEehhhhhcceEEEEEEeeccceeeEEEEEEeecCCcccccCCccEEEEEEEEEEeeeecc
Confidence 9887666555544443 788899999999999999999999988888887766654322111123333334556666543
No 10
>PHA02785 IL-beta-binding protein; Provisional
Probab=99.96 E-value=8.2e-27 Score=243.62 Aligned_cols=246 Identities=22% Similarity=0.313 Sum_probs=171.7
Q ss_pred ccCcEEEEEEe-----ecCCCCeEEEEEcccccccccccccCCCCCCceEeecc-eEEEeCCCCCCCCeEEEEEEEeCce
Q psy12060 208 ILNDITLSCYA-----GGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLSGG-NLIINDPRQVEDRGSYHCKASNKFG 281 (978)
Q Consensus 208 ~g~~~~l~C~~-----~g~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~i~~~~~~~d~G~Y~C~a~n~~g 281 (978)
.|+.+.|.|.+ .|.|.+++.|+|+|.... ......++ .|.|.++ ..+|+|.|+|+|.|..|
T Consensus 40 ~ge~~~l~C~~~~~~~~g~p~~~i~W~K~g~~~~------------~~~~~~~g~~l~i~~~-~~~DsG~Y~C~a~N~~g 106 (326)
T PHA02785 40 ENEPVILPCPQINTLSSGYNILDILWEKRGADND------------RIIPIDNGSNMLILNP-TQSDSGIYICITKNETY 106 (326)
T ss_pred cCCCEEEECCCccccccCCCCceEEEEECCCccc------------eEEEccCCceEEEccc-CcccCeEEEEEEECCCc
Confidence 36779999997 689999999999984321 12222334 4778787 88999999999999987
Q ss_pred eEEeEEEEEEEeeecc--cccCCCCeeeecccCeEEEeCC----CCCCCCceEEEecccccccccccceEEEeeCCcEEE
Q psy12060 282 SIISESVQLAFGFIGE--FNLKRAPEIGNQNWGKAMFCDP----PTNYPGVNYYWARDYFPNFVEEDKRVFVSYDGALYF 355 (978)
Q Consensus 282 ~~~s~~~~l~v~~~~~--~~~~~~~~~~~~~~~~~l~C~~----~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~L~i 355 (978)
.. +.+++|+|....+ +.....++...+|..+.|.|.. ..+.|++.|+|+++.. + ...++....++.|.|
T Consensus 107 ~~-~~s~~L~V~~~~~~~~~~~~~~~~~~~g~~~~i~C~~~~~~~~~~~~~~i~W~k~~~---~-~~~r~~~~~~~~L~i 181 (326)
T PHA02785 107 CD-MMSLNLTIVSVSESNIDLISYPQIVNERSTGEMVCPNINAFIASNVNADIIWSGHRR---L-RNKRLKQRTPGIITI 181 (326)
T ss_pred ce-EEEEEEEEEecCCCccceeeccceecccCcEEEECCChhhcccCCCCceEEEccCCc---c-CCcceEecCCCeEEE
Confidence 64 3456666644322 2233445667788889999963 2456889999998642 1 334555556789999
Q ss_pred eeeeeecceeeEEEEEeeccccccc-CCceeEEEccCCCccccccCCCCCCCCCCCCCCCCcEEEEEEEeecCCC---ee
Q psy12060 356 SALEQIDAGNYSCNVQSKVSDTGRN-GPFFPLKVFPHSNFQQLKFPNNFPKTFPEAPKAGDKVRLECVAFGYPVP---SY 431 (978)
Q Consensus 356 ~~~~~~d~G~Y~C~~~n~~~~~~~~-~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~v~~G~~~~l~C~~~g~p~~---~v 431 (978)
.+++.+|+|.|+|.|.|..+..... ...+.|.|..+...+.+..| ....+..|+.++|.|.+.|.|.+ .|
T Consensus 182 ~~v~~~d~G~Y~C~~~n~~g~~~~~~t~~v~l~V~~~~~pp~~~~p------~~~~~~~G~~v~L~C~a~g~P~~~~~~v 255 (326)
T PHA02785 182 EDVRKNDAGYYTCVLKYIYGDKTYNVTRIVKLEVRDRIIPPTMQLP------EGVVTSIGSNLTIACRVSLRPPTTDADV 255 (326)
T ss_pred eecChhhCeEEEEEEEeccCCEEEeEEEEEEEEEeccCCCceecCC------CcEEecCCCcEEEEEEEECCCCCCCceE
Confidence 9999999999999999987643221 22345555432211111112 12345679999999999988864 89
Q ss_pred EEEEcCccCCCCc-----eee------------ecccEEEeCCCCCCCCeEEEEEEEeCCCce
Q psy12060 432 NWTRRGSPLPRNA-----YFE------------NFNRILTIPNVKVEDQGEYICRASNDRSAL 477 (978)
Q Consensus 432 ~W~~~~~~l~~~~-----~~~------------~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~ 477 (978)
.|+|||..|.... ++. .....|+|.+++.+|+|.|+|.|.|..|..
T Consensus 256 ~W~kng~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~V~~~D~G~Y~C~A~n~~~~~ 318 (326)
T PHA02785 256 FWISNGMYYEEDDEDGDGRISVANKIYTTDKRRVITSRLNINPVKEEDATTFTCMAFTIPSIS 318 (326)
T ss_pred EEEECCEECCCcCCCCceeEEEecCccccccceeeeEEEEECCcchhcCeeeEEEEEeccCce
Confidence 9999999885421 110 013579999999999999999999987443
No 11
>PHA02785 IL-beta-binding protein; Provisional
Probab=99.95 E-value=6e-26 Score=237.12 Aligned_cols=245 Identities=20% Similarity=0.355 Sum_probs=178.0
Q ss_pred CCCCCCcEEEEEEE-----eecCCCeeEEEEcCccCCCCceeeecccEEEeCCCCCCCCeEEEEEEEeCCCceEEEEEEE
Q psy12060 410 APKAGDKVRLECVA-----FGYPVPSYNWTRRGSPLPRNAYFENFNRILTIPNVKVEDQGEYICRASNDRSALESSVTIS 484 (978)
Q Consensus 410 ~v~~G~~~~l~C~~-----~g~p~~~v~W~~~~~~l~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~ 484 (978)
.+.+|+.+.|.|.+ .|.|.++|+|+|+|..... ......+..|.|.++..+|+|.|+|.|.|..|....++.|.
T Consensus 37 ~~~~ge~~~l~C~~~~~~~~g~p~~~i~W~K~g~~~~~-~~~~~~g~~l~i~~~~~~DsG~Y~C~a~N~~g~~~~s~~L~ 115 (326)
T PHA02785 37 MELENEPVILPCPQINTLSSGYNILDILWEKRGADNDR-IIPIDNGSNMLILNPTQSDSGIYICITKNETYCDMMSLNLT 115 (326)
T ss_pred hhhcCCCEEEECCCccccccCCCCceEEEEECCCccce-EEEccCCceEEEcccCcccCeEEEEEEECCCcceEEEEEEE
Confidence 44689999999987 6889899999999864322 11122344588999999999999999999998888888888
Q ss_pred EEee--ceeeccCCcccccCCCceeEEEE-----eecCCCCeeEEeECCEECCCCCCCCCCCCcEEE-ecCEEEEEeCCC
Q psy12060 485 IQAE--PNFTIPLTDKHMDNQADLTWTCE-----AFGVPDVTYSWFRNGELLNSETLPLEDQDRYFI-QDNVLTIRYLNP 556 (978)
Q Consensus 485 V~~~--p~~~~~~~~~~~~~g~~~~l~C~-----~~~~p~~~i~W~~~g~~~~~~~~~~~~~~~~~~-~~~~l~i~~~~~ 556 (978)
|... |.+...+.+..+.+|+.+.|.|. ..+.|.++|+|++++. +. ..++.. ..+.|.|.+++.
T Consensus 116 V~~~~~~~~~~~~~~~~~~~g~~~~i~C~~~~~~~~~~~~~~i~W~k~~~-~~--------~~r~~~~~~~~L~i~~v~~ 186 (326)
T PHA02785 116 IVSVSESNIDLISYPQIVNERSTGEMVCPNINAFIASNVNADIIWSGHRR-LR--------NKRLKQRTPGIITIEDVRK 186 (326)
T ss_pred EEecCCCccceeeccceecccCcEEEECCChhhcccCCCCceEEEccCCc-cC--------CcceEecCCCeEEEeecCh
Confidence 8654 22332334455779999999997 2356889999998642 22 223333 356899999997
Q ss_pred CCCCeEEEEEEEcCCCceeeE----EEEEEEE--cCCccccCCCCcceeecCCCeEEEEEeeccCCCC---eeEEeeCCE
Q psy12060 557 ERDPAMYQCRAKNQLKTRYSS----AQLRVLT--LKPSFKKRPLESETYAGEGGNVTIFCNPEAAPKP---KFVWKKDGN 627 (978)
Q Consensus 557 ~~d~G~Y~C~a~n~~g~~~~~----~~l~v~~--~~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~---~i~W~~~g~ 627 (978)
+|+|.|+|.|.|..|..... +.+.|.. .+|.+ ..| ....+..|+.++|.|.+.|.|.+ .+.|++||.
T Consensus 187 -~d~G~Y~C~~~n~~g~~~~~~t~~v~l~V~~~~~pp~~-~~p--~~~~~~~G~~v~L~C~a~g~P~~~~~~v~W~kng~ 262 (326)
T PHA02785 187 -NDAGYYTCVLKYIYGDKTYNVTRIVKLEVRDRIIPPTM-QLP--EGVVTSIGSNLTIACRVSLRPPTTDADVFWISNGM 262 (326)
T ss_pred -hhCeEEEEEEEeccCCEEEeEEEEEEEEEeccCCCcee-cCC--CcEEecCCCcEEEEEEEECCCCCCCceEEEEECCE
Confidence 99999999999988765433 2344432 12222 222 44556789999999999998864 899999999
Q ss_pred EecCCC-----cEEEe-----------ecCcEEEccccCCCCEEEEEEEEeCCceee
Q psy12060 628 IIGSGG-----RRKIF-----------ENGNLLISPVSRDDSGIYSCTATNVHGMDE 668 (978)
Q Consensus 628 ~~~~~~-----~~~~~-----------~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~ 668 (978)
.+.... +.... ..+.|+|.+++.+|+|.|+|.|.|..|...
T Consensus 263 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~V~~~D~G~Y~C~A~n~~~~~~ 319 (326)
T PHA02785 263 YYEEDDEDGDGRISVANKIYTTDKRRVITSRLNINPVKEEDATTFTCMAFTIPSISK 319 (326)
T ss_pred ECCCcCCCCceeEEEecCccccccceeeeEEEEECCcchhcCeeeEEEEEeccCceE
Confidence 875421 22211 134699999999999999999999875443
No 12
>KOG3515|consensus
Probab=99.92 E-value=8.5e-23 Score=222.16 Aligned_cols=634 Identities=14% Similarity=0.119 Sum_probs=369.5
Q ss_pred ceeeeecCCCcceeeEEEecccccceeecccceeeeeecccCCCCCCCCCeeEeCCCceEecCCCccccCcEEEEEEe--
Q psy12060 141 RWGFERVTGMEPLLFICEASIQKLHYLLNDDRTYQYGMDIENPDKIPRGPYFIKQPTDVVFDLSKRSILNDITLSCYA-- 218 (978)
Q Consensus 141 ~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~~~P~~~~~p~~~~~~~~~~~~g~~~~l~C~~-- 218 (978)
.|......-.....|.|.+. |..+ ........+.+..++. -. +... .+....+..+.+.|.+
T Consensus 60 ~~~~~~~~~~~~~~~~c~a~----ns~~-~~~~~~~~l~v~~~pa------~~--~~~~---e~~~~~~~vvqi~c~~~~ 123 (741)
T KOG3515|consen 60 TLVTTGDVRDTVAELNCRAF----NSVG-MPSRCPMILDVDYPPA------CL--PELG---EIFQVDKGVVQIICSAKV 123 (741)
T ss_pred ceeeecchhhhhhhhhhhhc----cccc-CceecceeeccccCcc------cc--cccc---chhhhcCCeEEEEEeecC
Confidence 34445555567788999983 3322 2222344455544321 11 1111 1112235569999965
Q ss_pred ecCCCCeEEEEEcccccccccc--cccCCCCCCceEeecceEEEeCCCCCCCCeEEEEEEEeCceeEEeEEEEEEEeeec
Q psy12060 219 GGYPNPSYEWFKEDYVQDRLVA--NLIDPLSDKRFTLSGGNLIINDPRQVEDRGSYHCKASNKFGSIISESVQLAFGFIG 296 (978)
Q Consensus 219 ~g~p~~~v~W~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~i~~~~~~~d~G~Y~C~a~n~~g~~~s~~~~l~v~~~~ 296 (978)
.+.|.+.+.|+.++........ ..........+......|.+... +.+|.|.|+|.|.|......+....+.+....
T Consensus 124 ~~~P~~nlrW~~n~r~e~~~~~~~~~~~~~a~gss~t~~s~l~~~v~-Rka~~g~~tC~A~nr~s~~l~~~~~~~i~v~~ 202 (741)
T KOG3515|consen 124 AGRPNPNLRWGFNNRAELNAVNQRGRVGAGALGSSYTEPSLLKQTVS-RKADNGNYTCPANNRNSPGLSFAKQLTIIVEA 202 (741)
T ss_pred CCCCCcceeeeeccEEeecccCCcccccccccCceeccccceeeEEE-EecCCceeEcccccccCccccccceeEeeccc
Confidence 4788899999998753211110 00000011111122345666665 88999999999998543222222333322221
Q ss_pred c---cccC--CCCeeeecccCeEEEeCCCCCCCCceEEEecccccccccccceEEEeeCC-----cEEEeeeeeecceee
Q psy12060 297 E---FNLK--RAPEIGNQNWGKAMFCDPPTNYPGVNYYWARDYFPNFVEEDKRVFVSYDG-----ALYFSALEQIDAGNY 366 (978)
Q Consensus 297 ~---~~~~--~~~~~~~~~~~~~l~C~~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~-----~L~i~~~~~~d~G~Y 366 (978)
. +-.. ...+...++..+.|.|.+..|.|.+.++|+++..+.... .......++ ++.+..-...+.-..
T Consensus 203 ~~~~~~~~~~~~~qsF~~g~~inlvc~~~gg~P~~~~~w~~~s~~~~~~--sl~~~~~sg~~v~~~~~~~~~r~~~~~~~ 280 (741)
T KOG3515|consen 203 PCKGIGITGAQEQQSFTEGQTINLVCNAQGGNPSQQQTWYKDSRPQSES--SLLSQEPSGDTVSSTLVLRVGRQDLQAQL 280 (741)
T ss_pred ccccceecchhhcCcccccceEEEEehhhcCCcchhhhhccccccchhh--hcccCCCCCCcccccccccccccchhhhh
Confidence 1 1111 111445677788999999999999999999997664322 111111222 233433334444567
Q ss_pred EEEEEeecccccccCCceeEEEccCCCccccccCCCCCCCCCCCCCCCCcEEEEEEEe-ecCCCeeEEEEcCccCCCCce
Q psy12060 367 SCNVQSKVSDTGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPEAPKAGDKVRLECVAF-GYPVPSYNWTRRGSPLPRNAY 445 (978)
Q Consensus 367 ~C~~~n~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~v~~G~~~~l~C~~~-g~p~~~v~W~~~~~~l~~~~~ 445 (978)
.|.+.|.. .....+.|..++....+..+. ..+..|+...+.|... ++|.+.+.|+++.........
T Consensus 281 kc~a~n~~------~~~~~tav~~~~~~~~Ist~~-------~~ls~g~s~r~~c~~sss~p~~~i~w~~~~~~~~~~~~ 347 (741)
T KOG3515|consen 281 KCKASNLL------AASQITAVQVKPTAVPISTSD-------SGLSSGRSARSSCVSSSSKPPAHIAWYKDTKMPKGSQK 347 (741)
T ss_pred hccccCcc------ccceeeecccccccccccCcc-------cccccccccccceeccCCCCccceeeeccCcccccccC
Confidence 79998821 111234444433322222211 1356899999999765 588889999996554432221
Q ss_pred ee--------ecccEEEeCCCCCCCCeEEEEEEEeCCCce--EEEEEEEEEeeceeecc-CCcccccCCCceeEEEEeec
Q psy12060 446 FE--------NFNRILTIPNVKVEDQGEYICRASNDRSAL--ESSVTISIQAEPNFTIP-LTDKHMDNQADLTWTCEAFG 514 (978)
Q Consensus 446 ~~--------~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~--~~~~~l~V~~~p~~~~~-~~~~~~~~g~~~~l~C~~~~ 514 (978)
.. .....+........|.|.|+|.+.+..... +....|.|..+|.+... .......+++.....-.+.+
T Consensus 348 ~~~~t~~~~~v~~~~~~~q~~~~~~~g~v~c~a~~~~~~~~sss~~~l~~l~~p~~L~~~~~~v~~~e~d~~~~~~~~~~ 427 (741)
T KOG3515|consen 348 ASSKTSNMGGVAVISHYAQPSSQQDGGQVTCPADNLELAHSSSSSFLLPVLPSPAFLVRHKTAVVAMEQDHQAAPLPVRG 427 (741)
T ss_pred cccCCCcccceeeEEeeecccchhcCceEEccccccccccccccceeccccCCchhhhhcccceeeccCccccccCcccC
Confidence 11 111245666778899999999999876432 34456667777765542 23333445555444444335
Q ss_pred C-CCCeeEEeECCEECCCCCCCCCCCCcEEE--ecCEEEEEeCCCCCCCeEEEEEEEcCCCceeeEEEEEEEEcCCcccc
Q psy12060 515 V-PDVTYSWFRNGELLNSETLPLEDQDRYFI--QDNVLTIRYLNPERDPAMYQCRAKNQLKTRYSSAQLRVLTLKPSFKK 591 (978)
Q Consensus 515 ~-p~~~i~W~~~g~~~~~~~~~~~~~~~~~~--~~~~l~i~~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~~p~~~~ 591 (978)
. +.+++.|.+++.++... ......+ ........++.. .|.|.|.|.+.|..|.......+.+.. .|...
T Consensus 428 ~p~~~~~~w~~~~~~~~~~-----~g~~~~v~~~~~~~s~~~v~~-~d~g~y~~tatns~gg~~~~~~~~~~~-sp~~~- 499 (741)
T KOG3515|consen 428 APAERTFYWTFRLYKLSQV-----DGGVVRVGAGAGLGSGVNVSR-SDGGSYGLTATNSPGGAQAYLLLGVHT-SPHNH- 499 (741)
T ss_pred CCcccchhheecceecccc-----cCceEEeeccccccccceeee-ccCCcceeeeccCCCceeeEEeecccc-CCccc-
Confidence 5 47899999998887632 2222222 222333555664 899999999999999877666655543 33332
Q ss_pred CCCCcceeecCCCeEEEEEeeccCCCC--eeEEeeCCEEecCC-----CcEEEeecCcEEEccccCCCCEEEEEEEEeCC
Q psy12060 592 RPLESETYAGEGGNVTIFCNPEAAPKP--KFVWKKDGNIIGSG-----GRRKIFENGNLLISPVSRDDSGIYSCTATNVH 664 (978)
Q Consensus 592 ~~~~~~~~~~~g~~~~l~C~~~~~p~~--~i~W~~~g~~~~~~-----~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~ 664 (978)
..........|+++.+.|.....+.. .+.|.+.+...... .......++.+.+.......++.|.|.+.+..
T Consensus 500 -~~~~~~~~~~~ns~~~~~~q~~~~~~~~m~~~~r~ge~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~ 578 (741)
T KOG3515|consen 500 -HLQDQVEGATGNSVDGECMQDEQPQDQQMHHEPRSGEPPSDQIDQDAPQQQLMAHAQLLVSGNSSLQASETACVVDGSS 578 (741)
T ss_pred -ccccccccCCCCcccceeeccccccchhhhcccccCCCCcccccccccccccCCccceeecccccccccceEEeecCCC
Confidence 22233446678889999998776643 78899987765322 12222344557787777778899999998832
Q ss_pred ceeeeeEEEEEEeCCceeeeCCCce-EEEcc-ccEEEEEEeeecCCcCeEEEEeeCCEEcccccc-ccccCCeeecC-Cc
Q psy12060 665 GMDESKGRLIVLHGPSYYEQLPPKI-TIAAH-RNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDL-NELETPNINID-GG 740 (978)
Q Consensus 665 g~~~~~~~l~v~~~p~~~~~~~~~~-~~~~g-~~~~l~C~~~~~p~~~~~~~W~~~g~~~~~~~~-~~~~~~~~~~~-~~ 740 (978)
-.......+.+...+.. ....+.+ ....| ..++..|.+.+.+. ..+.|.++......... ........... ..
T Consensus 579 ~pA~~~~~l~~~s~~~v-~~~tp~~~~~~~g~v~as~~~~a~~~~~--~~~~~~k~p~~~~~~~~~~~~~~~~~~~~s~~ 655 (741)
T KOG3515|consen 579 PPAGLSLVLKAYSALIV-TVRTPNMYTAQEGCVNASDDCVASGVPS--TSFTTAKTPLQTTEGPHIREKATQQGQTHSSS 655 (741)
T ss_pred CccccceEEEecccccc-cccCCceeeeccCcccccccceeccccc--ceeecccCCCcccCCceEEEeeeecccccccc
Confidence 22233334444333332 2222322 22222 27889997776654 56799988766322110 00000111111 12
Q ss_pred eEEEeccCCCCCEEEEEEEEcCCCceeeeEEEEEcCCCCCCCceEEEEeeCCeeEEEeecCCCCCCCceeEEEEEeeccc
Q psy12060 741 LLEITNASFADAGEYECVVKSTVGKISTKTTVIVEGPPGLPGGVQVVEVHKTSATIQWTDGATNGRPITHYKIIARTNWN 820 (978)
Q Consensus 741 ~l~i~~~~~~d~g~Y~c~a~n~~G~~s~~~~l~v~~~P~~P~~~~~~~~~~~~v~l~W~~p~~~~~~i~~Y~v~~~~~~~ 820 (978)
...+..+...|.+ ..|.+.|..|..-.+..+.-...|..|.|+.+......++-|.|.|..++|.+ ..|.+.|.+.+.
T Consensus 656 ~~~~~~~~~~~y~-~~c~t~n~lg~~~v~~~~~~~t~~~~~~n~~~~~~~~~~i~l~~~p~fdgg~~-q~f~~~~~~~~~ 733 (741)
T KOG3515|consen 656 EWILNHIDGSDYE-NGCTTQNLLGSDHVSGAIHSGTASVGPINLTYDNLTYSTISLEWMPGFDGGLQ-QRFFLKYYDLGT 733 (741)
T ss_pred ccccCCcchhhhc-ceeeecccCCCccccceecCCcCCCCccceEeeeeeeeeeceeeeeccccccc-cceeeehhhcCC
Confidence 3334444445554 89999999998877777777777899999999999999999999999887754 678888776544
No 13
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=99.91 E-value=1.1e-18 Score=212.48 Aligned_cols=128 Identities=14% Similarity=0.197 Sum_probs=107.7
Q ss_pred ccccccccceec--cCeeEEEEccCCCCHHHHHHHhhhc-CCeeeeeCChhhHHHHHHHhhccCCCCceEEEEeecCCCc
Q psy12060 25 LELRCPQHWVQY--RDSCYRFVKSPLKTRNDAKLNCKSL-DSDLANVNDADEHGFIMYQLFWQDPQRRKWYFGGTQQSPN 101 (978)
Q Consensus 25 ~~~~Cp~~w~~~--~~~Cy~~~~~~~~~~~~A~~~C~~~-~~~L~~i~~~~e~~~i~~~~~~~~~~~~~w~g~~~~~~~~ 101 (978)
....||+||..| +++||+++... ++|.+|+..|+++ ||+||+|++++|++||.+++.... ...+|||+.|...++
T Consensus 314 ~~~~CP~GW~~f~~~g~CYk~~~e~-~TW~dAe~~C~s~GGAhLAsI~S~eEn~FL~~lv~~s~-~~~vWIGLsD~~~EG 391 (2740)
T TIGR00864 314 SHPHCPKDGEIFEENGHCFQIVPEE-AAWLDAQEQCLARAGAALAIVDNDALQNFLARKVTHSL-DRGVWIGFSDVNGAE 391 (2740)
T ss_pred cCCCCCCCCeecCCCCEEEEEeCCc-cCHHHHHHHhhccCCeEEecCCCHHHHHHHHHHhhccC-CccEEEeeeCCCCCC
Confidence 346899999765 89999999995 9999999999999 599999999999999999885432 346899999998887
Q ss_pred c--EEEcCCCCCCcccccCCCCCCCc-ccCceEEEEecccccceeeeecCCCcceeeEEEec
Q psy12060 102 L--WVNEDGTNLNELDAAFLPEPADN-VQRDYLAYSFSQSLKRWGFERVTGMEPLLFICEAS 160 (978)
Q Consensus 102 ~--w~w~dg~~~~~~~~~~~~~~~~~-~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~C~~~ 160 (978)
. |.|.||+.+..| ..|.+++|++ ..++|+.+.... .|+|..|.....|+|+..
T Consensus 392 ~g~WvWsDGS~l~~Y-tnW~pGEPNn~~~EdCV~l~~~g-----~WND~~Cs~~~~FICE~~ 447 (2740)
T TIGR00864 392 KGPAHQGEAFEAEEC-EEGLAGEPHPARAEHCVRLDPRG-----QCNSDLCNAPHAYVCELN 447 (2740)
T ss_pred ceeeEECCCCcccCc-cCcCCCCCCCCCCCCCEEEcCCC-----CEEccCCCCCeeEEeEEC
Confidence 6 999999998543 4688888876 568999874331 489999999999999984
No 14
>cd03599 CLECT_DGCR2_like C-type lectin-like domain (CTLD) of the type found in DGCR2, an integral membrane protein deleted in DiGeorge Syndrome (DGS). CLECT_DGCR2_like: C-type lectin-like domain (CTLD) of the type found in DGCR2, an integral membrane protein deleted in DiGeorge Syndrome (DGS). CTLD refers to a domain homologous to the carbohydrate-recognition domains (CRDs) of the C-type lectins. DGS is also known velo-cardio-facial syndrome (VCFS). DGS is a genetic abnormality that results in malformations of the heart, face, and limbs and is associated with schizophrenia and depressive disorders. DGCR2 is a candidate for involvement in the pathogenesis of DGS since the DGCR2 gene lies within the minimal DGS critical region (MDGRC) of 22q11, which when deleted gives rise to DGS, and the DGCR2 gene is in close proximity to the balanced translocation breakpoint in a DGS patient having a balanced translocation.
Probab=99.89 E-value=7.8e-23 Score=183.18 Aligned_cols=130 Identities=22% Similarity=0.307 Sum_probs=106.2
Q ss_pred ccccceeccC--eeEEEEccCCCCHHHHHHHhhhcCCeeeeeCChhhHHHHHHHhhccCC-------CCceEEEEeec--
Q psy12060 29 CPQHWVQYRD--SCYRFVKSPLKTRNDAKLNCKSLDSDLANVNDADEHGFIMYQLFWQDP-------QRRKWYFGGTQ-- 97 (978)
Q Consensus 29 Cp~~w~~~~~--~Cy~~~~~~~~~~~~A~~~C~~~~~~L~~i~~~~e~~~i~~~~~~~~~-------~~~~w~g~~~~-- 97 (978)
||+||..|++ +||+++... ++|.+|+.+|+++||+||+|++.+|++||..++..... ...+||||.+.
T Consensus 1 CP~gw~~~~~~~~CYk~~~~~-~tw~dA~~~C~~~Gg~Lasi~s~~e~~fl~~l~~~~~~~~~~~~~~~~~WIGL~~~~~ 79 (153)
T cd03599 1 CPSGWHHYEGTASCYKVYLSG-ENYWDAVQTCQKVNGSLATFTTDQELQFILAQEWDFDERVFGRKDQCKFWVGYQYVIT 79 (153)
T ss_pred CCCchhccCCCCeEEEEeCCc-CCHHHHHHHHHHcCCEEcCCCCHHHHHHHHHHHHhhcccccccccCCCEEEeeccccc
Confidence 9999999998 899999995 99999999999999999999999999999999854322 24589999633
Q ss_pred ----CCCccEEEc-CCCCCCcc--cccCCCCCCCcccCceEEEEec-----ccccceeeeecCCCcceeeEEEe
Q psy12060 98 ----QSPNLWVNE-DGTNLNEL--DAAFLPEPADNVQRDYLAYSFS-----QSLKRWGFERVTGMEPLLFICEA 159 (978)
Q Consensus 98 ----~~~~~w~w~-dg~~~~~~--~~~~~~~~~~~~~~~c~~~~~~-----~~~~~~~~~~~~~~~~~~~~C~~ 159 (978)
..+|.|.|+ ||+.+.+. ...|.+++|++++++|+.+... .......|++..|.....|+|+.
T Consensus 80 ~~~~~~eg~w~WsddGs~~~y~~w~~~w~~gePn~~~e~C~~~~~~~~~~~~~~~~~~W~d~~C~~~~~fiCq~ 153 (153)
T cd03599 80 NRNHSLEGRWEVAYKGSMEVFLPPEPIFATGMSTNDNVFCAQLQCFQIPSLRERGLHSWHAENCYEKSSFLCKR 153 (153)
T ss_pred ccCcccCCeEEEecCCccceecCccccCCCCCCCCCCCCCeEEEeeccccccccccCeeeCccCCCCCcceeCC
Confidence 568999999 59998642 2246788888877899998631 11234578999999999999974
No 15
>PHA02642 C-type lectin-like protein; Provisional
Probab=99.88 E-value=3.8e-22 Score=184.63 Aligned_cols=123 Identities=17% Similarity=0.294 Sum_probs=105.7
Q ss_pred ccccccccccccceeccCeeEEEEccCCCCHHHHHHHhhhcCCeeeeeCChhhHHHHHHHhhccCCCCceEEEEeecCCC
Q psy12060 21 TIDELELRCPQHWVQYRDSCYRFVKSPLKTRNDAKLNCKSLDSDLANVNDADEHGFIMYQLFWQDPQRRKWYFGGTQQSP 100 (978)
Q Consensus 21 ~~~~~~~~Cp~~w~~~~~~Cy~~~~~~~~~~~~A~~~C~~~~~~L~~i~~~~e~~~i~~~~~~~~~~~~~w~g~~~~~~~ 100 (978)
.....+..||.+|..|+++||+|+.. +++|.+|+++|+++||+||.|++++|++||..+.. ...+||||.+...+
T Consensus 80 ~~~~k~~~CP~gW~~~~~kCYyfs~~-~ksW~eA~~~C~s~ga~La~I~seeE~~FL~~~~~----~~~yWIGLsd~~~e 154 (216)
T PHA02642 80 EPTIKYVTCPKGWIGFGYKCFYFSED-SKNWTFGNTFCTSLGATLVKVETEEELNFLKRYKD----SSDHWIGLNRESSN 154 (216)
T ss_pred CCCcccCCCCCcCEEECCEEEEEeCc-ccCHHHHHHHHhhCCCeEeeECCHHHHHHHHHhhc----CCeEEEEeEeCCCC
Confidence 33445789999999999999999999 49999999999999999999999999999988753 24689999999999
Q ss_pred ccEEEcCCCCCCcccccCCCCCCCcccCceEEEEecccccceeeeecCCCcceeeEEEecc
Q psy12060 101 NLWVNEDGTNLNELDAAFLPEPADNVQRDYLAYSFSQSLKRWGFERVTGMEPLLFICEASI 161 (978)
Q Consensus 101 ~~w~w~dg~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~C~~~~ 161 (978)
+.|+|.||+.+.. .+|..+ .++|+.+... .|.+..|.....|+|+...
T Consensus 155 ~~W~WvDGS~~n~--~~~i~G-----~g~CAyLs~~------~i~s~~C~~~~~wIC~K~l 202 (216)
T PHA02642 155 HPWKWADNSNYNA--SFVITG-----TGECAYLNDI------RISSSRVYANRKWICSKTY 202 (216)
T ss_pred CceEECCCCccCc--ceeccC-----CCceEEEeCC------ceEccCcCCCceEEeeeec
Confidence 9999999998865 345433 5789887555 7899999999999999854
No 16
>cd03597 CLECT_attractin_like C-type lectin-like domain (CTLD) of the type found in human and mouse attractin (AtrN) and attractin-like protein (ALP). CLECT_attractin_like: C-type lectin-like domain (CTLD) of the type found in human and mouse attractin (AtrN) and attractin-like protein (ALP). CTLD refers to a domain homologous to the carbohydrate-recognition domains (CRDs) of the C-type lectins. Mouse AtrN (the product of the mahogany gene) has been shown to bind Agouti protein and to function in agouti-induced pigmentation and obesity. Mutations in AtrN have also been shown to cause spongiform encephalopathy and hypomyelination in rats and hamsters. The cytoplasmic region of mouse ALP has been shown to binds to melanocortin receptor (MCR4). Signaling through MCR4 plays a role in appetite suppression. Attractin may have therapeutic potential in the treatment of obesity. Human attractin (hAtrN) has been shown to be expressed on activated T cells and released extracellularly. The
Probab=99.88 E-value=1.7e-22 Score=180.08 Aligned_cols=125 Identities=18% Similarity=0.326 Sum_probs=105.6
Q ss_pred ccccceeccCeeEEEEccCCCCHHHHHHHhhhcCCeeeeeCChhhHHHHHHHhhccC---CCCceEEEEeecCCCccEEE
Q psy12060 29 CPQHWVQYRDSCYRFVKSPLKTRNDAKLNCKSLDSDLANVNDADEHGFIMYQLFWQD---PQRRKWYFGGTQQSPNLWVN 105 (978)
Q Consensus 29 Cp~~w~~~~~~Cy~~~~~~~~~~~~A~~~C~~~~~~L~~i~~~~e~~~i~~~~~~~~---~~~~~w~g~~~~~~~~~w~w 105 (978)
||++|..|+++||+++... ++|.+|+.+|+.+||+||+|++++|++||.+++.... ....+||||.+.. ++.|.|
T Consensus 1 Cp~gw~~~~~~Cy~~~~~~-~tw~~A~~~C~~~g~~La~i~~~~E~~fi~~~~~~~~~~~~~~~~WIGl~d~~-~g~w~W 78 (129)
T cd03597 1 CGEGWHLVGNSCLKINTAR-ESYDNAKLYCRNLNAVLASLTTQKKVEFVLKELQKHQMTKQKLTPWVGLRKIN-VSYWCW 78 (129)
T ss_pred CCCcCEEcCCEEEEEEcCC-CCHHHHHHHHHHcCCEEcCCCCHHHHHHHHHHHHhhcccCCCCceEEeeecCC-CCceEE
Confidence 9999999999999999994 9999999999999999999999999999998885431 2246899999875 689999
Q ss_pred cCCCCCCcccccCCCCCCCcccCceEEEEecccccceeeeecCCCcc-eeeEEEe
Q psy12060 106 EDGTNLNELDAAFLPEPADNVQRDYLAYSFSQSLKRWGFERVTGMEP-LLFICEA 159 (978)
Q Consensus 106 ~dg~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~-~~~~C~~ 159 (978)
.||+++...+..|.+++|++. ++|+.+.... ...|++..|... ..|+|+.
T Consensus 79 ~Dgs~~~~~~~~W~~geP~~~-~~C~~~~~~~---~~~w~d~~C~~~~~~~iCe~ 129 (129)
T cd03597 79 EDMSPFTNTTLQWLPGEPSDA-GFCGYLEEPA---VSGLKANPCTNPVNGSVCER 129 (129)
T ss_pred CCCCCCCCccccCCCCCCCCc-ccEEEEcccc---cCccccCCcCCCCcceeecC
Confidence 999998643456888888874 7999875443 236899999988 6999984
No 17
>cd03588 CLECT_CSPGs C-type lectin-like domain (CTLD) of the type found in chondroitin sulfate proteoglycan core proteins. CLECT_CSPGs: C-type lectin-like domain (CTLD) of the type found in chondroitin sulfate proteoglycan core proteins (CSPGs) in human and chicken aggrecan, frog brevican, and zebra fish dermacan. CTLD refers to a domain homologous to the carbohydrate-recognition domains (CRDs) of the C-type lectins. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Xenopus brevican is expressed in the notochord and the brain during early embryogenesis. Zebra fish dermacan is expressed in dermal bones and may play a role in dermal bone development. CSPGs do contain LINK domain(s) which bind HA. These LINK domains are considered by one classif
Probab=99.87 E-value=6.1e-22 Score=176.39 Aligned_cols=120 Identities=21% Similarity=0.420 Sum_probs=104.3
Q ss_pred ccccceeccCeeEEEEccCCCCHHHHHHHhhhcCCeeeeeCChhhHHHHHHHhhccCCCCceEEEEeecCCCccEEEcCC
Q psy12060 29 CPQHWVQYRDSCYRFVKSPLKTRNDAKLNCKSLDSDLANVNDADEHGFIMYQLFWQDPQRRKWYFGGTQQSPNLWVNEDG 108 (978)
Q Consensus 29 Cp~~w~~~~~~Cy~~~~~~~~~~~~A~~~C~~~~~~L~~i~~~~e~~~i~~~~~~~~~~~~~w~g~~~~~~~~~w~w~dg 108 (978)
||+||+.|+++||+|+... ++|.+|++.|+.+||+||+|++++|++||..++ ...+||||.+...++.|.|.||
T Consensus 1 Cp~gw~~~~~~Cy~~~~~~-~sw~~A~~~C~~~gg~La~i~s~~e~~fl~~~~-----~~~~WIGl~~~~~~~~~~W~dg 74 (124)
T cd03588 1 CEEGWDKFQGHCYRHFPDR-ETWEDAERRCREQQGHLSSIVTPEEQEFVNNNA-----QDYQWIGLNDRTIEGDFRWSDG 74 (124)
T ss_pred CCccceecCCEEEEEECCc-cCHHHHHHHHHhcCCEEeccCCHHHHHHHHHhc-----cCcEEecceecCCCCceEeCCC
Confidence 9999999999999999995 999999999999999999999999999998865 2458999999988999999999
Q ss_pred CCCCcccccCCCCCCCc---ccCceEEEEecccccceeeeecCCCcceeeEEEe
Q psy12060 109 TNLNELDAAFLPEPADN---VQRDYLAYSFSQSLKRWGFERVTGMEPLLFICEA 159 (978)
Q Consensus 109 ~~~~~~~~~~~~~~~~~---~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~C~~ 159 (978)
+++.+ ..|..++|++ ..++|+.+..... ..|.+..|.....|+|+.
T Consensus 75 ~~~~~--~~W~~~~p~~~~~~~~~Cv~~~~~~~---~~W~d~~C~~~~~fICe~ 123 (124)
T cd03588 75 HPLQF--ENWRPNQPDNFFATGEDCVVMIWHEE---GEWNDVPCNYHLPFTCKK 123 (124)
T ss_pred Ccccc--cCcCCCCCCCCCCCCCCeEEEecCCC---CeEcCCCCCCCCeeeeeC
Confidence 99864 5688888875 3578988853322 278999999999999985
No 18
>cd03590 CLECT_DC-SIGN_like C-type lectin-like domain (CTLD) of the type found in human dendritic cell (DC)-specific intercellular adhesion molecule 3-grabbing non-integrin (DC-SIGN) and the related receptor, DC-SIGN receptor (DC-SIGNR). CLECT_DC-SIGN_like: C-type lectin-like domain (CTLD) of the type found in human dendritic cell (DC)-specific intercellular adhesion molecule 3-grabbing non-integrin (DC-SIGN) and the related receptor, DC-SIGN receptor (DC-SIGNR). This group also contains proteins similar to hepatic asialoglycoprotein receptor (ASGP-R) and langerin in human. These proteins are type II membrane proteins with a CTLD ectodomain. CTLD refers to a domain homologous to the carbohydrate-recognition domains (CRDs) of the C-type lectins. DC-SIGN is thought to mediate the initial contact between dendritic cells and resting T cells, and may also mediate the rolling of DCs on epithelium. DC-SIGN and DC-SIGNR bind to oligosaccharides present on human tissues, as well as, on path
Probab=99.86 E-value=3.7e-21 Score=173.59 Aligned_cols=123 Identities=25% Similarity=0.499 Sum_probs=108.3
Q ss_pred ccccceeccCeeEEEEccCCCCHHHHHHHhhhcCCeeeeeCChhhHHHHHHHhhccCCCCceEEEEeecCCCccEEEcCC
Q psy12060 29 CPQHWVQYRDSCYRFVKSPLKTRNDAKLNCKSLDSDLANVNDADEHGFIMYQLFWQDPQRRKWYFGGTQQSPNLWVNEDG 108 (978)
Q Consensus 29 Cp~~w~~~~~~Cy~~~~~~~~~~~~A~~~C~~~~~~L~~i~~~~e~~~i~~~~~~~~~~~~~w~g~~~~~~~~~w~w~dg 108 (978)
||.+|+.|+++||+|+... ++|.+|+.+|+.+||+||+|++.+|++||.+++. ....+|||+.+...++.|.|.||
T Consensus 1 Cp~~w~~~~~~Cy~~~~~~-~tw~~A~~~C~~~g~~La~i~s~~e~~~l~~~~~---~~~~~WiGl~~~~~~~~~~W~dg 76 (126)
T cd03590 1 CPTNWKSFQSSCYFFSTEK-KSWEESRQFCEDMGAHLVIINSQEEQEFISKILS---GNRSYWIGLSDEETEGEWKWVDG 76 (126)
T ss_pred CCCCceEeCCEEEEEeCCC-cCHHHHHHHHHhCCCEEEeeCCHHHHHHHHHHhC---CCCCEEEeeecCCCcCCeEecCC
Confidence 9999999999999999994 9999999999999999999999999999999885 34679999999888999999999
Q ss_pred CCCCcccccCCCCCCCcc---cCceEEEEecccccceeeeecCCCcceeeEEEe
Q psy12060 109 TNLNELDAAFLPEPADNV---QRDYLAYSFSQSLKRWGFERVTGMEPLLFICEA 159 (978)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~---~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~C~~ 159 (978)
+.+...+..|..++|++. .++|+.+.... ..|.+..|.....|+|++
T Consensus 77 ~~~~~~~~~W~~~~p~~~~~~~~~C~~~~~~~----~~w~~~~C~~~~~fiCek 126 (126)
T cd03590 77 TPLNSSKTFWHPGEPNNWGGGGEDCAELVYDS----GGWNDVPCNLEYRWICEK 126 (126)
T ss_pred CCCCCccCCcCCCcCCCCCCCCCCCEEEECCC----CcEeCcCCCCCEeeeeeC
Confidence 998433466888888764 67999987653 378999999999999984
No 19
>cd03589 CLECT_CEL-1_like C-type lectin-like domain (CTLD) of the type found in CEL-1 from Cucumaria echinata and Echinoidin from Anthocidaris crassispina. CLECT_CEL-1_like: C-type lectin-like domain (CTLD) of the type found in CEL-1 from Cucumaria echinata and Echinoidin from Anthocidaris crassispina. CTLD refers to a domain homologous to the carbohydrate-recognition domains (CRDs) of the C-type lectins. The CEL-1 CTLD binds three calcium ions and has a high specificity for N-acteylgalactosamine (GalNAc). CEL-1 exhibits strong cytotoxicity which is inhibited by GalNAc. This protein may play a role as a toxin defending against predation. Echinoidin is found in the coelomic fluid of the sea urchin and is specific for GalBeta1-3GalNAc. Echinoidin has a cell adhesive activity towards human cancer cells which is not mediated through the CTLD. Both CEL-1 and Echinoidin are multimeric proteins comprised of multiple dimers linked by disulfide bonds.
Probab=99.86 E-value=3.1e-21 Score=176.70 Aligned_cols=127 Identities=20% Similarity=0.384 Sum_probs=108.9
Q ss_pred ccccceeccCeeEEEEccCCCCHHHHHHHhhhc-----CCeeeeeCChhhHHHHHHHhhcc---CCCCceEEEEeecCCC
Q psy12060 29 CPQHWVQYRDSCYRFVKSPLKTRNDAKLNCKSL-----DSDLANVNDADEHGFIMYQLFWQ---DPQRRKWYFGGTQQSP 100 (978)
Q Consensus 29 Cp~~w~~~~~~Cy~~~~~~~~~~~~A~~~C~~~-----~~~L~~i~~~~e~~~i~~~~~~~---~~~~~~w~g~~~~~~~ 100 (978)
||+||+.|+++||+++... ++|.+|+++|+++ +|+||+|+|++|++||..++... .....+|||+.+...+
T Consensus 1 Cp~gw~~~~~~Cy~~~~~~-~~w~~A~~~C~~~~~~g~~~~La~i~s~~e~~~l~~~~~~~~~~~~~~~~WiGl~~~~~~ 79 (137)
T cd03589 1 CPTFWTAFGGYCYRFFGDR-LTWEEAELRCRSFSIPGLIAHLVSIHSQEENDFVYDLFESSRGPDTPYGLWIGLHDRTSE 79 (137)
T ss_pred CCcchhhhCCEEEEEeCCC-cCHHHHHHHHHhhcCCCCCceEcccCCHHHHHHHHHHHhhccccCCCCcEEEeeecCCcc
Confidence 9999999999999999995 9999999999997 69999999999999999988653 2346799999999889
Q ss_pred ccEEEcCCCCCCcccccCCCCCCCcc--cCceEEEEecccccceeeeecCCCcceeeEEEe
Q psy12060 101 NLWVNEDGTNLNELDAAFLPEPADNV--QRDYLAYSFSQSLKRWGFERVTGMEPLLFICEA 159 (978)
Q Consensus 101 ~~w~w~dg~~~~~~~~~~~~~~~~~~--~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~C~~ 159 (978)
+.|.|.||+++.+ ..|.+++|++. .++|+.+..... ....|.+..|.....|+|+.
T Consensus 80 ~~~~W~dG~~~~~--~~W~~~~P~~~~~~~~C~~~~~~~~-~~~~W~d~~C~~~~~fIC~~ 137 (137)
T cd03589 80 GPFEWTDGSPVDF--TKWAGGQPDNYGGNEDCVQMWRRGD-AGQSWNDMPCDAVFPYICKM 137 (137)
T ss_pred CceEeCCcCcCCc--CCcCCCCCCCCCCCCCceeeecCCC-CCCeecCCCCCCCcceeeeC
Confidence 9999999999754 56888888863 679998865531 23468999999999999984
No 20
>cd03594 CLECT_REG-1_like C-type lectin-like domain (CTLD) of the type found in Human REG-1 (lithostathine), REG-4, and avian eggshell-specific proteins: ansocalcin, structhiocalcin-1(SCA-1), and -2(SCA-2). CLECT_REG-1_like: C-type lectin-like domain (CTLD) of the type found in Human REG-1 (lithostathine), REG-4, and avian eggshell-specific proteins: ansocalcin, structhiocalcin-1(SCA-1), and -2(SCA-2). CTLD refers to a domain homologous to the carbohydrate-recognition domains (CRDs) of the C-type lectins. REG-1 is a proliferating factor which participates in various kinds of tissue regeneration including pancreatic beta-cell regeneration, regeneration of intestinal mucosa, regeneration of motor neurons, and perhaps in tissue regeneration of damaged heart. REG-1 may play a role on the pathophysiology of Alzheimer's disease and in the development of gastric cancers. Its expression is correlated with reduced survival from early-stage colorectal cancer. REG-1 also binds and aggregates
Probab=99.85 E-value=4.4e-21 Score=173.62 Aligned_cols=126 Identities=22% Similarity=0.397 Sum_probs=108.7
Q ss_pred ccccceeccCeeEEEEccCCCCHHHHHHHhhhc--CCeeeeeCChhhHHHHHHHhhccC-CCCceEEEEeecCCCccEEE
Q psy12060 29 CPQHWVQYRDSCYRFVKSPLKTRNDAKLNCKSL--DSDLANVNDADEHGFIMYQLFWQD-PQRRKWYFGGTQQSPNLWVN 105 (978)
Q Consensus 29 Cp~~w~~~~~~Cy~~~~~~~~~~~~A~~~C~~~--~~~L~~i~~~~e~~~i~~~~~~~~-~~~~~w~g~~~~~~~~~w~w 105 (978)
||.||..|+++||+|+... ++|.+|+++|+.+ ||+||+|++++|++||..++.... ....+||||.+...++.|.|
T Consensus 1 Cp~gw~~~~~~Cy~~~~~~-~tw~~A~~~C~~~~~g~~La~i~s~~e~~~l~~~~~~~~~~~~~~WiGl~~~~~~~~~~W 79 (129)
T cd03594 1 CPKGWLPYKGNCYGYFRQP-LSWSDAELFCQKYGPGAHLASIHSPAEAAAIASLISSYQKAYQPVWIGLHDPQQSRGWEW 79 (129)
T ss_pred CCCCCEecCCEeeeEeccC-cCHHHHHHHHHhcCCCceEcccCCHHHHHHHHHHHHhhccCCccEEEeeccCCCCCceEe
Confidence 9999999999999999995 9999999999999 499999999999999999886543 34579999999888899999
Q ss_pred cCCCCCCcccccCCCCCCCcccCceEEEEecccccceeeeecCCCcceeeEEEe
Q psy12060 106 EDGTNLNELDAAFLPEPADNVQRDYLAYSFSQSLKRWGFERVTGMEPLLFICEA 159 (978)
Q Consensus 106 ~dg~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~C~~ 159 (978)
.||+.+.+ ..|.+++|....++|+.+....+ ...|.+..|.....|+|+.
T Consensus 80 ~dg~~~~~--~~W~~~~p~~~~~~Cv~~~~~~~--~~~W~~~~C~~~~~fICe~ 129 (129)
T cd03594 80 SDGSKLDY--RSWDRNPPYARGGYCAELSRSTG--FLKWNDANCEERNPFICKY 129 (129)
T ss_pred CCCCccee--cccCCCCCCCCCCCceEEEecCC--CCeEECCCCCCCceeeeeC
Confidence 99999853 56888888666789999865432 2368999999999999973
No 21
>cd03593 CLECT_NK_receptors_like C-type lectin-like domain (CTLD) of the type found in natural killer cell receptors (NKRs). CLECT_NK_receptors_like: C-type lectin-like domain (CTLD) of the type found in natural killer cell receptors (NKRs), including proteins similar to oxidized low density lipoprotein (OxLDL) receptor (LOX-1), CD94, CD69, NKG2-A and -D, osteoclast inhibitory lectin (OCIL), dendritic cell-associated C-type lectin-1 (dectin-1), human myeloid inhibitory C-type lectin-like receptor (MICL), mast cell-associated functional antigen (MAFA), killer cell lectin-like receptors: subfamily F, member 1 (KLRF1) and subfamily B, member 1 (KLRB1), and lys49 receptors. CTLD refers to a domain homologous to the carbohydrate-recognition domains (CRDs) of the C-type lectins. NKRs are variously associated with activation or inhibition of natural killer (NK) cells. Activating NKRs stimulate cytolysis by NK cells of virally infected or transformed cells; inhibitory NKRs block cytolysis up
Probab=99.85 E-value=7.6e-21 Score=168.35 Aligned_cols=116 Identities=28% Similarity=0.488 Sum_probs=100.7
Q ss_pred ccccceeccCeeEEEEccCCCCHHHHHHHhhhcCCeeeeeCChhhHHHHHHHhhccCCCCceEEEEeecCCCccEEEcCC
Q psy12060 29 CPQHWVQYRDSCYRFVKSPLKTRNDAKLNCKSLDSDLANVNDADEHGFIMYQLFWQDPQRRKWYFGGTQQSPNLWVNEDG 108 (978)
Q Consensus 29 Cp~~w~~~~~~Cy~~~~~~~~~~~~A~~~C~~~~~~L~~i~~~~e~~~i~~~~~~~~~~~~~w~g~~~~~~~~~w~w~dg 108 (978)
||++|+.|+++||+++... ++|.+|+.+|+.+||+||+|+|.+|++||..++ ....+|||+.+...++.|.|.||
T Consensus 1 Cp~gw~~~~~~Cy~~~~~~-~~w~~A~~~C~~~g~~La~i~s~~e~~~l~~~~----~~~~~WiGl~~~~~~~~~~W~dg 75 (116)
T cd03593 1 CPKDWICYGNKCYYFSMEK-KTWNESKEACSSKNSSLLKIDDEEELEFLQSQI----GSSSYWIGLSREKSEKPWKWIDG 75 (116)
T ss_pred CCCcCEEeCCEEEEEEcCC-CCHHHHHHHHHhCCCcEEEECCHHHHHHHHHhc----CCCceEEEEeecCCCCCeEccCC
Confidence 9999999999999999995 999999999999999999999999999999887 23578999999988999999999
Q ss_pred CCCCcccccCCCCCCCcccCceEEEEecccccceeeeecCCCcceeeEEEe
Q psy12060 109 TNLNELDAAFLPEPADNVQRDYLAYSFSQSLKRWGFERVTGMEPLLFICEA 159 (978)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~C~~ 159 (978)
+++. .|+... |++..++|+.+... .|.+..|.....|+|++
T Consensus 76 ~~~~---~~~~~~-~~~~~~~C~~~~~~------~w~~~~C~~~~~~IC~k 116 (116)
T cd03593 76 SPLN---NLFNIR-GSTKSGNCAYLSST------GIYSEDCSTKKRWICEK 116 (116)
T ss_pred Cccc---cccccc-CCCCCCCceEEcCC------cEEcccCCcCceeeeeC
Confidence 9876 344443 33367899987543 57999999999999984
No 22
>PHA02953 IEV and EEV membrane glycoprotein; Provisional
Probab=99.83 E-value=2.8e-20 Score=169.46 Aligned_cols=119 Identities=14% Similarity=0.285 Sum_probs=95.1
Q ss_pred cccccccceeccCeeEEEEccCCCCHHHHHHHhhhcCCeeeeeCChhhHHHHHHHhhccCCCCceEEEEeecCCCccEEE
Q psy12060 26 ELRCPQHWVQYRDSCYRFVKSPLKTRNDAKLNCKSLDSDLANVNDADEHGFIMYQLFWQDPQRRKWYFGGTQQSPNLWVN 105 (978)
Q Consensus 26 ~~~Cp~~w~~~~~~Cy~~~~~~~~~~~~A~~~C~~~~~~L~~i~~~~e~~~i~~~~~~~~~~~~~w~g~~~~~~~~~w~w 105 (978)
...||+||..|+++||+++... ++|.+|+.+|+.+||+|+.++ +|+.|+..+.. ...+||||++ .++.|.|
T Consensus 44 ~~~CP~GW~~~~~~CYk~f~~~-~tW~~A~~~C~~~Gg~L~~~~--~e~~fv~~~~~----~~~~WIGL~d--~eg~W~w 114 (170)
T PHA02953 44 PSACAKGWIPYDNYCYLDTNIQ-LSTYGAVYLCNKYRARLPKPN--FRHLKVLSLTY----GKDFWVSLKK--KNNRWLD 114 (170)
T ss_pred cCcCcccChhhCCEEEEEECCc-CCHHHHHHHHHhcCCCCCCCc--HHHHHHHHhcc----CCCEEEeEEC--CCCceEe
Confidence 4679999999999999999995 999999999999999997777 67888877642 2358999998 7889999
Q ss_pred cCCCCCCccc-----ccCCCCCCCcccCceEEEEecccccceeeeecCCCcceeeEEEec
Q psy12060 106 EDGTNLNELD-----AAFLPEPADNVQRDYLAYSFSQSLKRWGFERVTGMEPLLFICEAS 160 (978)
Q Consensus 106 ~dg~~~~~~~-----~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~C~~~ 160 (978)
.||+....+. ..|.+++ ++..++|+.+.. + .|++..|.....|+|+..
T Consensus 115 ~Dggs~~~y~~~~~~~~w~~~~-~~~~e~C~~~~~--~----~W~d~~C~~~~~fICqk~ 167 (170)
T PHA02953 115 INTNKTVDMNKNTELKKIKSKT-KNDNEACYIYKS--G----ELKETVCNSVNYIICVKR 167 (170)
T ss_pred CCCCeeeccccccccccccCCC-CCCCCCceEEeC--C----eEEeccCCCCcEEEEEEe
Confidence 9975432222 2366444 556789987743 1 689999999999999873
No 23
>PHA03097 C-type lectin-like protein; Provisional
Probab=99.83 E-value=6.7e-20 Score=166.07 Aligned_cols=117 Identities=18% Similarity=0.273 Sum_probs=95.7
Q ss_pred cccccccccccceeccCeeEEEEccCCCCHHHHHHHhhhcCCeeeeeCChhhHHHHHHHhhccCCCCceEEEEeecCCCc
Q psy12060 22 IDELELRCPQHWVQYRDSCYRFVKSPLKTRNDAKLNCKSLDSDLANVNDADEHGFIMYQLFWQDPQRRKWYFGGTQQSPN 101 (978)
Q Consensus 22 ~~~~~~~Cp~~w~~~~~~Cy~~~~~~~~~~~~A~~~C~~~~~~L~~i~~~~e~~~i~~~~~~~~~~~~~w~g~~~~~~~~ 101 (978)
.+.....||++|..|+++||+|+... ++|.+|+.+|+++||+|++|++++|++||.+++. ...+||||.+...
T Consensus 39 ~~~~~~~CP~gW~~~~~~CY~~s~~~-~sW~~A~~~C~~~g~~La~I~~~~E~~fi~~~~~----~~~~WIGL~d~~~-- 111 (157)
T PHA03097 39 GDRSGLNCRSGWVGYNNKCYTFSENI-TNKHLAIERCADMDGILTLIDDQKEVLFVSRYKG----GQDLWIGIEKKKG-- 111 (157)
T ss_pred CCCcCCCCCCCceeeCCEEEEEecCC-CcHHHHHHHHHhCCCEEeeeCCHHHHHHHHHhcC----CCCEEEeeecCCC--
Confidence 33445679999999999999999995 9999999999999999999999999999988762 3468999988754
Q ss_pred cEEEcCCCCCCcccccCCCCCCCcccCceEEEEecccccceeeeecCCCcceeeEEEec
Q psy12060 102 LWVNEDGTNLNELDAAFLPEPADNVQRDYLAYSFSQSLKRWGFERVTGMEPLLFICEAS 160 (978)
Q Consensus 102 ~w~w~dg~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~C~~~ 160 (978)
|.||+.... .++.+ ...++|+.+... .|.+..|.....|+|+..
T Consensus 112 ---W~dgs~~~~--~~~~~----~~~e~Cv~i~~~------~w~d~~C~~~~~~ICek~ 155 (157)
T PHA03097 112 ---DDDDREVLD--KVVKP----PKSGKCAYLKDK------TIISSNCNATKGWICFDR 155 (157)
T ss_pred ---ccCCCcccc--cccCC----CCCCCEEEEECC------cEEeCCCCCCeeEEEeec
Confidence 899987643 33322 246889877443 589999999999999973
No 24
>cd03596 CLECT_tetranectin_like C-type lectin-like domain (CTLD) of the type found in the tetranectin (TN), cartilage derived C-type lectin (CLECSF1), and stem cell growth factor (SCGF). CLECT_tetranectin_like: C-type lectin-like domain (CTLD) of the type found in the tetranectin (TN), cartilage derived C-type lectin (CLECSF1), and stem cell growth factor (SCGF). CTLD refers to a domain homologous to the carbohydrate-recognition domains (CRDs) of the C-type lectins. TN binds to plasminogen and stimulates activation of plasminogen, playing a key role in the regulation of proteolytic processes. The TN CTLD binds two calcium ions. Its calcium free form binds to various kringle-like protein ligands. Two residues involved in the coordination of calcium are critical for the binding of TN to the fourth kringle (K4) domain of plasminogen (Plg K4). TN binds the kringle 1-4 form of angiostatin (AST K1-4). AST K1-4 is a fragment of Plg, commonly found in cancer tissues. TN inhibits the bin
Probab=99.82 E-value=5.8e-20 Score=165.14 Aligned_cols=123 Identities=17% Similarity=0.255 Sum_probs=103.7
Q ss_pred ccccceeccCeeEEEEccCCCCHHHHHHHhhhcCCeeeeeCChhhHHHHHHHhhccC-CCCceEEEEeecCCCccEEEcC
Q psy12060 29 CPQHWVQYRDSCYRFVKSPLKTRNDAKLNCKSLDSDLANVNDADEHGFIMYQLFWQD-PQRRKWYFGGTQQSPNLWVNED 107 (978)
Q Consensus 29 Cp~~w~~~~~~Cy~~~~~~~~~~~~A~~~C~~~~~~L~~i~~~~e~~~i~~~~~~~~-~~~~~w~g~~~~~~~~~w~w~d 107 (978)
||+|| .++++||+|+... ++|.+|+.+|+.+||+||+|++++|++||.+++.... ....+||||++...++.|.|.|
T Consensus 1 c~~g~-~~~~~CY~~~~~~-~~w~~A~~~C~~~g~~La~i~s~~e~~~l~~~~~~~~~~~~~~WiGl~~~~~~~~w~w~d 78 (129)
T cd03596 1 CLKGT-KIHKKCYLVSEET-KHYHEASEDCIARGGTLATPRDSDENDALRDYVKASVPGNWEVWLGINDMVAEGKWVDVN 78 (129)
T ss_pred CCCCc-EECCEEEEEeccc-CCHHHHHHHHHhcCCeEecCCCHHHHHHHHHHHHhccCCCCcEEEeccccCccCeEEeCC
Confidence 99997 4589999999995 9999999999999999999999999999998885543 3457999999999999999999
Q ss_pred CCCCCcccccCCC---CCCCc-ccCceEEEEecccccceeeeecCCCcceeeEEE
Q psy12060 108 GTNLNELDAAFLP---EPADN-VQRDYLAYSFSQSLKRWGFERVTGMEPLLFICE 158 (978)
Q Consensus 108 g~~~~~~~~~~~~---~~~~~-~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~C~ 158 (978)
|+++.+ ..|.. ++|++ ..++|+.+.... ...|.+..|.....|+|+
T Consensus 79 G~~~~~--~~W~~~~~~~p~~~~~~~Cv~l~~~~---~~~W~d~~C~~~~~fICe 128 (129)
T cd03596 79 GSPISY--FNWEREITAQPDGGKRENCVALSSSA---QGKWFDEDCRREKPYVCE 128 (129)
T ss_pred CCCccc--cccCCCCCCCCCCCCCCCCEEEccCC---CCcCcCccCCCCCceecc
Confidence 999864 44664 66664 467899886542 226899999999999997
No 25
>cd03598 CLECT_EMBP_like C-type lectin-like domain (CTLD) of the type found in the human proteins, eosinophil major basic protein (EMBP) and prepro major basic protein homolog (MBPH). CLECT_EMBP_like: C-type lectin-like domain (CTLD) of the type found in the human proteins, eosinophil major basic protein (EMBP) and prepro major basic protein homolog (MBPH). CTLD refers to a domain homologous to the carbohydrate-recognition domains (CRDs) of the C-type lectins. Eosinophils and basophils carry out various functions in allergic, parasitic, and inflammatory diseases. EMBP is stored in eosinophil crystalloid granules and is released upon degranulation. EMBP is also expressed in basophils. The proform of EMBP is expressed in placental X cells and breast tissue and increases significantly during human pregnancy. EMBP has cytotoxic properties and damages bacteria and mammalian cells, in vitro, as well as, helminth parasites. EMBP deposition has been observed in the inflamed tissue of all
Probab=99.78 E-value=1.2e-18 Score=153.32 Aligned_cols=114 Identities=24% Similarity=0.304 Sum_probs=97.8
Q ss_pred CeeEEEEccCCCCHHHHHHHhhhc-CCeeeeeCChhhHHHHHHHhhccCCCCceEEEEeec--CCCccEEEcCCCCCCcc
Q psy12060 38 DSCYRFVKSPLKTRNDAKLNCKSL-DSDLANVNDADEHGFIMYQLFWQDPQRRKWYFGGTQ--QSPNLWVNEDGTNLNEL 114 (978)
Q Consensus 38 ~~Cy~~~~~~~~~~~~A~~~C~~~-~~~L~~i~~~~e~~~i~~~~~~~~~~~~~w~g~~~~--~~~~~w~w~dg~~~~~~ 114 (978)
|+||+|+..+ ++|.+|+..|+.+ ||+||+|+|++|++||.+++... ....+||||.+. ..++.|.|.||+++.+
T Consensus 1 ~~Cy~~~~~~-~t~~~A~~~C~~~~g~~La~i~s~~e~~~l~~~~~~~-~~~~~WiGl~~~~~~~~~~~~W~dg~~~~y- 77 (117)
T cd03598 1 GRCYRFVKSP-RTFRDAQVICRRCYRGNLASIHSFAFNYRVQRLVSTL-NQAQVWIGGIITGKGRCRRFSWVDGSVWNY- 77 (117)
T ss_pred CceEEEecCC-CCHHHHHHHhhcCCCceEeeecChhHhHHHHHHHhCC-CCCCEEEeeEcCCCCcCCeeEeCCCCccCc-
Confidence 5799999995 9999999999995 99999999999999999988543 345789999988 5688999999999864
Q ss_pred cccCCCCCCCcccCceEEEEecccccceeeeecCCCcceeeEEEe
Q psy12060 115 DAAFLPEPADNVQRDYLAYSFSQSLKRWGFERVTGMEPLLFICEA 159 (978)
Q Consensus 115 ~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~C~~ 159 (978)
..|.+++|++..++|+.+....+ .|.+..|.....|+|+.
T Consensus 78 -~~W~~g~p~~~~~~Cv~~~~~~g----~W~~~~C~~~~~fiC~~ 117 (117)
T cd03598 78 -AYWAPGQPGNRRGHCVELCTRGG----HWRRAHCKLRRPFICSY 117 (117)
T ss_pred -CCCCCCCCCCCCCCcEEEeCCCC----eECCCcCCCCceeeecC
Confidence 56999999887789998865432 68999999999999973
No 26
>PHA02867 C-type lectin protein; Provisional
Probab=99.78 E-value=1.1e-18 Score=155.51 Aligned_cols=115 Identities=18% Similarity=0.334 Sum_probs=92.8
Q ss_pred ccccccccccccceeccCeeEEEEccCCCCHHHHHHHhhhcCCeeeeeCChhhHHHHHHHhhccCCCCceEEEEeecCCC
Q psy12060 21 TIDELELRCPQHWVQYRDSCYRFVKSPLKTRNDAKLNCKSLDSDLANVNDADEHGFIMYQLFWQDPQRRKWYFGGTQQSP 100 (978)
Q Consensus 21 ~~~~~~~~Cp~~w~~~~~~Cy~~~~~~~~~~~~A~~~C~~~~~~L~~i~~~~e~~~i~~~~~~~~~~~~~w~g~~~~~~~ 100 (978)
..+..+.+||++|..++++||+|+... ++|.+|+..|+.+||+|+.|++++|++|+.++. ...+||||.+...
T Consensus 41 ~~~~~~~~CP~gWi~~~~~CY~fs~~~-~tW~~A~~~C~~~ga~La~I~s~eE~~Fl~~~~-----~~~~WIGLs~~~~- 113 (167)
T PHA02867 41 AFPYFSKVCPDEWIGYNSKCYYFTINE-TNWNDSKKLCDVMDSSLIRFDNIETLNFVSRYG-----KGSYWIDINQNRK- 113 (167)
T ss_pred cCCCcCCCCCCCCEEECCEEEEEeccc-cCHHHHHHHHhhCCCEECCcCCHHHHHHHHHcC-----CCCEEEEEEeCCC-
Confidence 344567789999999999999999995 999999999999999999999999999998753 2469999998753
Q ss_pred ccEEEcCCCCCCcccccCCCCCCCcccCceEEEEecccccceeeeecCCCcceeeEEEec
Q psy12060 101 NLWVNEDGTNLNELDAAFLPEPADNVQRDYLAYSFSQSLKRWGFERVTGMEPLLFICEAS 160 (978)
Q Consensus 101 ~~w~w~dg~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~C~~~ 160 (978)
|.|.+++.+ + ...+.++|+.+... .+.+..|+....++|+..
T Consensus 114 --~~~~~~s~~------~----~~~~~~~Ca~i~~~------~i~s~~C~~~~~wIC~K~ 155 (167)
T PHA02867 114 --IPGINFSLY------Y----EQGVNDICLLFDTS------NIIEMSCIFHERTICVKE 155 (167)
T ss_pred --CCCccCcee------e----ecCCCCcEEEEeCC------eEEeecccCCcEEEEEcc
Confidence 344443322 1 12246788887655 789999999999999985
No 27
>PHA02826 IL-1 receptor-like protein; Provisional
Probab=99.78 E-value=5.7e-18 Score=164.82 Aligned_cols=151 Identities=23% Similarity=0.398 Sum_probs=115.1
Q ss_pred CCCCCCCcEEEEEEEeecCC-----------CeeEEEEcCccC--C-CC----------ceeeecccEEEeCCCCCCCCe
Q psy12060 409 EAPKAGDKVRLECVAFGYPV-----------PSYNWTRRGSPL--P-RN----------AYFENFNRILTIPNVKVEDQG 464 (978)
Q Consensus 409 ~~v~~G~~~~l~C~~~g~p~-----------~~v~W~~~~~~l--~-~~----------~~~~~~~~~L~i~~~~~~d~G 464 (978)
..+.+|+++.|.|.+.+.|. +.|.|+|++... . .+ ......+..|.|.+++.+|+|
T Consensus 32 ~~v~eGe~v~L~C~~~~~~~~~~~~~~~~~~~~V~W~k~~s~~~v~~~~~~~~~~~i~~~~~~~r~~~L~I~~v~~~DsG 111 (227)
T PHA02826 32 VYAKFGDPMVLLCTGKHYKKSIFFDKTFITSYNVTWSKTDSLAFVRDSGARTKIKKITHNEIGDRSENLWIGNVINIDEG 111 (227)
T ss_pred EEecCCCCEEEEccccccccccccccccCCCccEEEEeCCeEEEEEcCCCccccccccccceecCCCeEEECCCChHHCE
Confidence 35679999999999877543 489999987542 0 00 111123568999999999999
Q ss_pred EEEEEEEeCCCceEEEEEEEEEeeceeeccCCcccccCCCceeEEEEee-----cCCCCeeEEeECCEECCCCCCCCCCC
Q psy12060 465 EYICRASNDRSALESSVTISIQAEPNFTIPLTDKHMDNQADLTWTCEAF-----GVPDVTYSWFRNGELLNSETLPLEDQ 539 (978)
Q Consensus 465 ~Y~C~a~n~~g~~~~~~~l~V~~~p~~~~~~~~~~~~~g~~~~l~C~~~-----~~p~~~i~W~~~g~~~~~~~~~~~~~ 539 (978)
.|+|.|+|..+....++.|.|..++ .+..+.+|+++.|.|.+. +.|.|+|+|+|+|+++.. .
T Consensus 112 ~Y~C~a~N~~~~~~~~i~L~V~~~~------~~~~~~~G~~v~L~C~~~~~~~~~~p~p~I~WyKng~~l~~-------~ 178 (227)
T PHA02826 112 IYICTISSGNICEESTIRLTFDSGT------INYQFNSGKDSKLHCYGTDGISSTFKDYTLTWYKNGNIVLY-------T 178 (227)
T ss_pred EEEEEEEECCcceEEEEEEEEecCC------ccceEecCCCEEEEeeCCCCccccCCCceEEEEECCEECCC-------C
Confidence 9999999988888888888885322 234567899999999976 345799999999999863 2
Q ss_pred CcEEE--ecCEEEEEeCCCCCCCeEEEEEEEcCCCc
Q psy12060 540 DRYFI--QDNVLTIRYLNPERDPAMYQCRAKNQLKT 573 (978)
Q Consensus 540 ~~~~~--~~~~l~i~~~~~~~d~G~Y~C~a~n~~g~ 573 (978)
.++.+ ..+.|.|.++.. +|+|.|+|.|....+.
T Consensus 179 ~r~~~~~~~~~L~I~~V~~-~DsG~YtC~a~~~~~g 213 (227)
T PHA02826 179 DRIQLRNNNSTLVIKSATH-DDSGIYTCNLRFNKNS 213 (227)
T ss_pred CCEEEeCCCCEEEECcCCH-HhCEEEEEEEEEeECC
Confidence 33433 345899999997 9999999999986543
No 28
>cd03591 CLECT_collectin_like C-type lectin-like domain (CTLD) of the type found in human collectins including lung surfactant proteins A and D, mannose- or mannan binding lectin (MBL), and CL-L1 (collectin liver 1). CLECT_collectin_like: C-type lectin-like domain (CTLD) of the type found in human collectins including lung surfactant proteins A and D, mannose- or mannan binding lectin (MBL), and CL-L1 (collectin liver 1). CTLD refers to a domain homologous to the carbohydrate-recognition domains (CRDs) of the C-type lectins. The CTLDs of these collectins bind carbohydrates on surfaces (e.g. pathogens, allergens, necrotic, or apoptotic cells) and mediate functions associated with killing and phagocytosis. MBPs recognize high mannose oligosaccharides in a calcium dependent manner, bind to a broad range of pathogens, and trigger cell killing by activating the complement pathway. MBP also acts directly as an opsonin. SP-A and SP-D in addition to functioning as host defense components, a
Probab=99.77 E-value=2.6e-18 Score=150.49 Aligned_cols=112 Identities=20% Similarity=0.200 Sum_probs=97.0
Q ss_pred CeeEEEEccCCCCHHHHHHHhhhcCCeeeeeCChhhHHHHHHHhhccCCCCceEEEEeecCCCccEEEcCCCCCCccccc
Q psy12060 38 DSCYRFVKSPLKTRNDAKLNCKSLDSDLANVNDADEHGFIMYQLFWQDPQRRKWYFGGTQQSPNLWVNEDGTNLNELDAA 117 (978)
Q Consensus 38 ~~Cy~~~~~~~~~~~~A~~~C~~~~~~L~~i~~~~e~~~i~~~~~~~~~~~~~w~g~~~~~~~~~w~w~dg~~~~~~~~~ 117 (978)
.+||+++... ++|.+|+.+|+.+||+||+|++.+|++||.+++.. ....+|||+.+...++.|.|.||+++.+ ..
T Consensus 1 ~k~y~~~~~~-~~w~~A~~~C~~~g~~La~i~s~~e~~~l~~~~~~--~~~~~WiGl~~~~~~~~~~w~dg~~~~y--~~ 75 (114)
T cd03591 1 EKIFVTNGEE-KNFDDAQKLCSEAGGTLAMPRNAAENAAIASYVKK--GNTYAFIGITDLETEGQFVYLDGGPLTY--TN 75 (114)
T ss_pred CcEEEeCCce-eCHHHHHHHHhhcCCEEecCCCHHHHHHHHHHHhc--CCccEEEecccCCcCCcEEeCCCCCccc--CC
Confidence 3799999995 99999999999999999999999999999999865 3457999999998999999999999953 56
Q ss_pred CCCCCCCcc--cCceEEEEecccccceeeeecCCCcceeeEEEe
Q psy12060 118 FLPEPADNV--QRDYLAYSFSQSLKRWGFERVTGMEPLLFICEA 159 (978)
Q Consensus 118 ~~~~~~~~~--~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~C~~ 159 (978)
|.+++|++. .++|+.+... + .|.+..|.....|+|+.
T Consensus 76 W~~~ep~~~~~~~~Cv~~~~~-~----~W~~~~C~~~~~fICe~ 114 (114)
T cd03591 76 WKPGEPNNAGGGEDCVEMYTS-G----KWNDVACNLTRLFVCEF 114 (114)
T ss_pred cCCCCCCCCCCCCCeEEECCC-C----cCcCccCCCCeeEEeeC
Confidence 888888764 4689988732 2 68999999999999973
No 29
>cd03603 CLECT_VCBS A bacterial subgroup of the C-type lectin-like (CTLD) domain; a subgroup of bacterial protein domains homologous to the carbohydrate-recognition domains (CRDs) of the C-type lectins. CLECT_VCBS: A bacterial subgroup of the C-type lectin-like (CTLD) domain; a subgroup of bacterial protein domains homologous to the carbohydrate-recognition domains (CRDs) of the C-type lectins. Many CTLDs are calcium-dependent carbohydrate binding modules; other CTLDs bind protein ligands, lipids, and inorganic surfaces including CaCO3 and ice. Bacterial CTLDs within this group are functionally uncharacterized. Animal C-type lectins are involved in such functions as extracellular matrix organization, endocytosis, complement activation, pathogen recognition, and cell-cell interactions. CTLDs may bind a variety of carbohydrate ligands including mannose, N-acetylglucosamine, galactose, N-acetylgalactosamine, and fucose. CTLDs associate with each other through several different surface
Probab=99.76 E-value=5e-18 Score=148.93 Aligned_cols=113 Identities=19% Similarity=0.279 Sum_probs=94.5
Q ss_pred eeEEEEccCCCCHHHHHHHhhhcCCeeeeeCChhhHHHHHHHhhccCCCCceEEEEeecCCCccEEEcCCCCCCcccccC
Q psy12060 39 SCYRFVKSPLKTRNDAKLNCKSLDSDLANVNDADEHGFIMYQLFWQDPQRRKWYFGGTQQSPNLWVNEDGTNLNELDAAF 118 (978)
Q Consensus 39 ~Cy~~~~~~~~~~~~A~~~C~~~~~~L~~i~~~~e~~~i~~~~~~~~~~~~~w~g~~~~~~~~~w~w~dg~~~~~~~~~~ 118 (978)
+||+|+... ++|.+|+..|+++||+||+|+|++|++||..++. ....+|||+.+...++.|.|.||+++.+ ..|
T Consensus 1 ~~Y~~~~~~-~sw~~A~~~C~~~g~~La~I~s~~E~~fv~~~~~---~~~~~WiG~~~~~~~~~w~W~dg~~~~~--~~W 74 (118)
T cd03603 1 HFYKFVDGG-MTWEAAQTLAESLGGHLVTINSAEENDWLLSNFG---GYGASWIGASDAATEGTWKWSDGEESTY--TNW 74 (118)
T ss_pred CeEEEeCCC-cCHHHHHHHHHHcCCEEcccCCHHHHHHHHHHhc---cCCCEEEeeecCCCCCceEeCCCCcCCC--CCc
Confidence 599999995 9999999999999999999999999999999885 2457899999988899999999999754 568
Q ss_pred CCCCC-Cc--ccCceEEEEecccccceeeeecCCC-cceeeEEE
Q psy12060 119 LPEPA-DN--VQRDYLAYSFSQSLKRWGFERVTGM-EPLLFICE 158 (978)
Q Consensus 119 ~~~~~-~~--~~~~c~~~~~~~~~~~~~~~~~~~~-~~~~~~C~ 158 (978)
..++| ++ ..++|+.+.... .....|++..|+ ....|+|+
T Consensus 75 ~~~eP~~~~~~~~~Cv~~~~~~-~~~~~W~d~~C~~~~~~~iCe 117 (118)
T cd03603 75 GSGEPHNNGGGNEDYAAINHFP-GISGKWNDLANSYNTLGYVIE 117 (118)
T ss_pred CCCCCCCCCCCCcCeEEeecCC-CCCCcCccCCCCccccceEEe
Confidence 88887 54 357898875421 012268999999 99999997
No 30
>PHA02826 IL-1 receptor-like protein; Provisional
Probab=99.76 E-value=4.5e-17 Score=158.53 Aligned_cols=160 Identities=19% Similarity=0.267 Sum_probs=117.6
Q ss_pred CCcccccCCCceeEEEEeecCC-----------CCeeEEeECCEEC--CC-CC---CCCCCCCcEEEecCEEEEEeCCCC
Q psy12060 495 LTDKHMDNQADLTWTCEAFGVP-----------DVTYSWFRNGELL--NS-ET---LPLEDQDRYFIQDNVLTIRYLNPE 557 (978)
Q Consensus 495 ~~~~~~~~g~~~~l~C~~~~~p-----------~~~i~W~~~g~~~--~~-~~---~~~~~~~~~~~~~~~l~i~~~~~~ 557 (978)
..+..+.+|+++.|.|.+.+.| .+.+.|+|++... .. .. .......++...++.|.|.+++.
T Consensus 29 ~~~~~v~eGe~v~L~C~~~~~~~~~~~~~~~~~~~~V~W~k~~s~~~v~~~~~~~~~~~i~~~~~~~r~~~L~I~~v~~- 107 (227)
T PHA02826 29 LTPVYAKFGDPMVLLCTGKHYKKSIFFDKTFITSYNVTWSKTDSLAFVRDSGARTKIKKITHNEIGDRSENLWIGNVIN- 107 (227)
T ss_pred cceEEecCCCCEEEEccccccccccccccccCCCccEEEEeCCeEEEEEcCCCccccccccccceecCCCeEEECCCCh-
Confidence 3456688999999999987643 4589999987542 10 00 00001112222356899999996
Q ss_pred CCCeEEEEEEEcCCCceeeEEEEEEEEcCCccccCCCCcceeecCCCeEEEEEeecc-----CCCCeeEEeeCCEEecCC
Q psy12060 558 RDPAMYQCRAKNQLKTRYSSAQLRVLTLKPSFKKRPLESETYAGEGGNVTIFCNPEA-----APKPKFVWKKDGNIIGSG 632 (978)
Q Consensus 558 ~d~G~Y~C~a~n~~g~~~~~~~l~v~~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~~-----~p~~~i~W~~~g~~~~~~ 632 (978)
+|+|.|+|.|.|..+....+..|.|.. +. ....+.+|+.+.|.|.+.+ .|.|+++|+|+|..+..+
T Consensus 108 ~DsG~Y~C~a~N~~~~~~~~i~L~V~~--~~-------~~~~~~~G~~v~L~C~~~~~~~~~~p~p~I~WyKng~~l~~~ 178 (227)
T PHA02826 108 IDEGIYICTISSGNICEESTIRLTFDS--GT-------INYQFNSGKDSKLHCYGTDGISSTFKDYTLTWYKNGNIVLYT 178 (227)
T ss_pred HHCEEEEEEEEECCcceEEEEEEEEec--CC-------ccceEecCCCEEEEeeCCCCccccCCCceEEEEECCEECCCC
Confidence 999999999999888777777777642 21 1233678999999999863 457899999999999877
Q ss_pred CcEEEeec-CcEEEccccCCCCEEEEEEEEeCC
Q psy12060 633 GRRKIFEN-GNLLISPVSRDDSGIYSCTATNVH 664 (978)
Q Consensus 633 ~~~~~~~~-~~l~i~~~~~~d~G~Y~C~a~n~~ 664 (978)
.+..+..+ ++|.|.+++.+|+|.|+|.|....
T Consensus 179 ~r~~~~~~~~~L~I~~V~~~DsG~YtC~a~~~~ 211 (227)
T PHA02826 179 DRIQLRNNNSTLVIKSATHDDSGIYTCNLRFNK 211 (227)
T ss_pred CCEEEeCCCCEEEECcCCHHhCEEEEEEEEEeE
Confidence 77665544 469999999999999999998754
No 31
>smart00034 CLECT C-type lectin (CTL) or carbohydrate-recognition domain (CRD). Many of these domains function as calcium-dependent carbohydrate binding modules.
Probab=99.75 E-value=5.3e-18 Score=153.76 Aligned_cols=125 Identities=26% Similarity=0.479 Sum_probs=105.8
Q ss_pred ccccceeccCeeEEEEccCCCCHHHHHHHhhhcCCeeeeeCChhhHHHHHHHhhcc-CCCCceEEEEeecCCCccEEEcC
Q psy12060 29 CPQHWVQYRDSCYRFVKSPLKTRNDAKLNCKSLDSDLANVNDADEHGFIMYQLFWQ-DPQRRKWYFGGTQQSPNLWVNED 107 (978)
Q Consensus 29 Cp~~w~~~~~~Cy~~~~~~~~~~~~A~~~C~~~~~~L~~i~~~~e~~~i~~~~~~~-~~~~~~w~g~~~~~~~~~w~w~d 107 (978)
||.+|+.++++||+++... ++|.+|+.+|+.+||+|++|++.+|++||.+++... .....+|+|+.+....+.|.|.|
T Consensus 1 Cp~~w~~~~~~Cy~~~~~~-~~~~~A~~~C~~~~~~La~i~~~~e~~~i~~~~~~~~~~~~~~WiG~~~~~~~~~~~W~d 79 (126)
T smart00034 1 CPSGWISYGGKCYKFSTEK-KTWADAQAFCQSLGAHLASIHSEAENDFVASLLKNSGSNSDYYWIGLSDPDSNGSWQWSD 79 (126)
T ss_pred CCcchhhhCCEEEEEECCc-cCHHHHHHHHHhcCCEEcccCCHHHHHHHHHHHHhhcCCCCCEEEecCccCcCCCeEECC
Confidence 9999999999999999995 999999999999999999999999999999988653 23467999999877889999999
Q ss_pred CCCCCcccccCCCCCCCcccCceEEEEecccccceeeeecCCCcceeeEEE
Q psy12060 108 GTNLNELDAAFLPEPADNVQRDYLAYSFSQSLKRWGFERVTGMEPLLFICE 158 (978)
Q Consensus 108 g~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~C~ 158 (978)
|+.... +..|.++++....++|+.+..... ..|.+..|.....|+|+
T Consensus 80 g~~~~~-~~~w~~~~~~~~~~~C~~~~~~~~---~~w~~~~C~~~~~~ICe 126 (126)
T smart00034 80 GSGPVN-YSNWAPGEPNGGSGDCVVLSTSGG---GKWNDVSCTSKLPFVCE 126 (126)
T ss_pred CCCCCC-ccccCCCCCCCCCCCCEEEecCCC---CcccCCCCCCCcccccC
Confidence 998322 245777744446789999876653 46899999999999996
No 32
>KOG0196|consensus
Probab=99.74 E-value=4.7e-17 Score=173.70 Aligned_cols=197 Identities=21% Similarity=0.254 Sum_probs=144.9
Q ss_pred EEcCCCCCCCceEEEEeeCCeeEEEeecCCCCCC-CceeEEEEEeeccc--cCceEecccccceeeeecCCceeeEEeec
Q psy12060 773 IVEGPPGLPGGVQVVEVHKTSATIQWTDGATNGR-PITHYKIIARTNWN--STWFNVSEHVIGKEVDRYTGRKEASIENV 849 (978)
Q Consensus 773 ~v~~~P~~P~~~~~~~~~~~~v~l~W~~p~~~~~-~i~~Y~v~~~~~~~--~~w~~~~~~~~~~~~~~~~~~~~~~~~~~ 849 (978)
-=..||++|.++... +..+++.|.|.+|.+.|+ .-..|.|.++.-+. ..-..+..++....-..--..+..++.+
T Consensus 327 pCT~PPSaP~nlis~-vn~Ts~~L~W~~P~d~GGR~Di~y~v~Ck~c~~~~~~C~~Cg~~V~f~P~q~gLt~~~V~v~~- 404 (996)
T KOG0196|consen 327 PCTRPPSAPRNLISN-VNGTSLILEWSPPADTGGREDITYNVICKKCGGGRGACEPCGDNVRFTPRQRGLTETSVTVSD- 404 (996)
T ss_pred CCCCCCCccceeeee-cccceEEEEecCCcccCCCcceEEEEEeeccCCCCCccccCCCCceECCCCCCcccceEEEec-
Confidence 345799999999874 999999999999998765 45568777665322 2223343333332222223456778999
Q ss_pred cCCCceeEEEEEEecCCccCC---CCCCCCCCCCCCCCCCCCCCceeecccccCcEEEEEEeCCCCCCCCCcceEEEEEE
Q psy12060 850 LVPWSTYEFKVIAGNELGYGE---PSSPSPQYNTPADKPYQAPSRIGGGGGKIGDLSISWEPLPREKQNAPNIYYKIFWR 926 (978)
Q Consensus 850 L~p~~~Y~~~v~A~N~~G~g~---~s~~~~~~~t~~~~P~~~P~~~~~~~~~~~si~v~W~~p~~~~~~g~i~~Y~i~~~ 926 (978)
|.+.++|+|.|.|+|.+-.-. ....+..++|.++.| ++..+++....+.++|+|+|.. |+.+||.|.-|.|.|.
T Consensus 405 L~ah~~YTFeV~AvNgVS~lsp~~~~~a~vnItt~qa~p-s~V~~~r~~~~~~~sitlsW~~--p~~png~ildYEvky~ 481 (996)
T KOG0196|consen 405 LLAHTNYTFEVEAVNGVSDLSPFPRQFASVNITTNQAAP-SPVSVLRQVSRTSDSITLSWSE--PDQPNGVILDYEVKYY 481 (996)
T ss_pred cccccccEEEEEEeecccccCCCCCcceeEEeeccccCC-CccceEEEeeeccCceEEecCC--CCCCCCcceeEEEEEe
Confidence 999999999999999874322 222233567777777 4566899999999999999998 7889999999999999
Q ss_pred ecCCccceeeeeeeccceeEEEEEcCCCCceeeEEEEEEEecCCCCCCCCCC
Q psy12060 927 KKNDTEFQSETLKEYGNVGIAVVRIPSEFYYTEYEVKVQAINDVGPGPESEV 978 (978)
Q Consensus 927 ~~~~~~~~~~~~~~~~~~~~~~~~l~~L~p~t~Y~~~V~A~n~~G~gp~S~~ 978 (978)
+++.++.....+... ....+|.+|+|+|.|.|+|+|.+.+|.|++|.+
T Consensus 482 ek~~~e~~~~~~~t~----~~~~ti~gL~p~t~YvfqVRarT~aG~G~~S~~ 529 (996)
T KOG0196|consen 482 EKDEDERSYSTLKTK----TTTATITGLKPGTVYVFQVRARTAAGYGPYSGK 529 (996)
T ss_pred eccccccceeEEecc----cceEEeeccCCCcEEEEEEEEecccCCCCCCCc
Confidence 886544333333321 134669999999999999999999999999863
No 33
>cd03601 CLECT_TC14_like C-type lectin-like domain (CTLD) of the type found in lectins TC14, TC14-2, TC14-3, and TC14-4 from the budding tunicate Polyandrocarpa misakiensis and PfG6 from the Acorn worm. CLECT_TC14_like: C-type lectin-like domain (CTLD) of the type found in lectins TC14, TC14-2, TC14-3, and TC14-4 from the budding tunicate Polyandrocarpa misakiensis and PfG6 from the Acorn worm. CTLD refers to a domain homologous to the carbohydrate-recognition domains (CRDs) of the C-type lectins. TC14 is homodimeric. The CTLD of TC14 binds D-galactose and D-fucose. TC14 is expressed constitutively by multipotent epithelial and mesenchymal cells and plays in role during budding, in inducing the aggregation of undifferentiated mesenchymal cells to give rise to epithelial forming tissue. TC14-2 and TC14-3 shows calcium-dependent galactose binding activity. TC14-3 is a cytostatic factor which blocks cell growth and dedifferentiation of the atrial epithelium during asexual reproducti
Probab=99.74 E-value=1.5e-17 Score=146.34 Aligned_cols=113 Identities=13% Similarity=0.069 Sum_probs=89.7
Q ss_pred eEEEEccCCCCHHHHHHHhhhcCCeeeeeCChhhHHHHHHHhhcc--CCCCceEEEEeec-CCCccEEEcCCCCCCcccc
Q psy12060 40 CYRFVKSPLKTRNDAKLNCKSLDSDLANVNDADEHGFIMYQLFWQ--DPQRRKWYFGGTQ-QSPNLWVNEDGTNLNELDA 116 (978)
Q Consensus 40 Cy~~~~~~~~~~~~A~~~C~~~~~~L~~i~~~~e~~~i~~~~~~~--~~~~~~w~g~~~~-~~~~~w~w~dg~~~~~~~~ 116 (978)
-|+|+.. +++|.+|+.+|+.+||+||+|++++| ++.+.+... .....+||||++. ..++.|.|.||+++...+.
T Consensus 2 ~~~~~~~-~~~w~~A~~~C~~~G~~La~i~s~~e--~~~~~i~~~~~~~~~~~WIGl~d~~~~~g~~~W~dG~~~~~~y~ 78 (119)
T cd03601 2 EILCSDE-TMNYAKAGAFCRSRGMRLASLAMRDS--EMRDAILAFTLVKGHGYWVGADNLQDGEYDFLWNDGVSLPTDSD 78 (119)
T ss_pred EEEEcCC-cCCHHHHHHHHHhcCCEEeeecCHHH--HHHHHHHhccccCCccEEEEeccCCCCCCCeEeCCCCCcCCCCC
Confidence 3788888 49999999999999999999999988 333333222 2234689999998 8899999999999853346
Q ss_pred cCCCCCCCcc--cCceEEEEecccccceeeeecCCCcceeeEEEe
Q psy12060 117 AFLPEPADNV--QRDYLAYSFSQSLKRWGFERVTGMEPLLFICEA 159 (978)
Q Consensus 117 ~~~~~~~~~~--~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~C~~ 159 (978)
.|.+++|++. .++|+.+....+ .|++..|.....|+|+.
T Consensus 79 ~W~~geP~~~~~~e~Cv~~~~~~~----~W~d~~C~~~~~fICek 119 (119)
T cd03601 79 LWAPNEPSNPQSRQLCVQLWSKYN----LLDDEYCGRAKRVICEK 119 (119)
T ss_pred ccCCCcCcCcCCCcCCeEEeCCCC----CEeCccCCCCceeeecC
Confidence 6899988873 578998865422 68999999999999974
No 34
>cd03592 CLECT_selectins_like C-type lectin-like domain (CTLD) of the type found in the type 1 transmembrane proteins: P(platlet)-, E(endothelial)-, and L(leukocyte)- selectins (sels). CLECT_selectins_like: C-type lectin-like domain (CTLD) of the type found in the type 1 transmembrane proteins: P(platlet)-, E(endothelial)-, and L(leukocyte)- selectins (sels). CTLD refers to a domain homologous to the carbohydrate-recognition domains (CRDs) of the C-type lectins. P- E- and L-sels are cell adhesion receptors that mediate the initial attachment, tethering, and rolling of lymphocytes on inflamed vascular walls enabling subsequent lymphocyte adhesion and transmigration. L- sel is expressed constitutively on most leukocytes. P-sel is stored in the Weibel-Palade bodies of endothelial cells and in the alpha granules of platlets. E- sels are present on endothelial cells. Following platelet and/or endothelial cell activation P- sel is rapidly translocated to the cell surface and E-sel exp
Probab=99.71 E-value=3.4e-17 Score=143.98 Aligned_cols=112 Identities=20% Similarity=0.298 Sum_probs=94.3
Q ss_pred EEEEccCCCCHHHHHHHhhhcCCeeeeeCChhhHHHHHHHhhccCCCCceEEEEeecCCCccEEEcCCCCCCcccccCCC
Q psy12060 41 YRFVKSPLKTRNDAKLNCKSLDSDLANVNDADEHGFIMYQLFWQDPQRRKWYFGGTQQSPNLWVNEDGTNLNELDAAFLP 120 (978)
Q Consensus 41 y~~~~~~~~~~~~A~~~C~~~~~~L~~i~~~~e~~~i~~~~~~~~~~~~~w~g~~~~~~~~~w~w~dg~~~~~~~~~~~~ 120 (978)
|+|+... ++|.+|+.+|+.+||+||+|++++|++||..++... ....+|||+.+...++.|.|.||+++.+ ..|.+
T Consensus 3 Y~~~~~~-~~w~~A~~~C~~~g~~La~i~s~~e~~~i~~~~~~~-~~~~~WiG~~~~~~~~~W~~~dg~~~~y--~~W~~ 78 (115)
T cd03592 3 YHYSTEK-MTFNEAVKYCKSRGTDLVAIQNAEENALLNGFALKY-NLGYYWIDGNDINNEGTWVDTDKKELEY--KNWAP 78 (115)
T ss_pred EEEcCCc-cCHHHHHHHHHHcCCeEeecCCHHHHHHHHHHHHhc-CCCCEEEeCccCCccCeEEeCCCCcccc--cccCC
Confidence 8999995 999999999999999999999999999999986443 2347999999988889999999998654 56888
Q ss_pred CCCCcc-cCceEEEEecccccceeeeecCCCcceeeEEEe
Q psy12060 121 EPADNV-QRDYLAYSFSQSLKRWGFERVTGMEPLLFICEA 159 (978)
Q Consensus 121 ~~~~~~-~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~C~~ 159 (978)
++|++. .++|+.+..... ..|.+..|.....|+|+.
T Consensus 79 geP~~~~~~~Cv~~~~~~~---g~W~d~~C~~~~~fICe~ 115 (115)
T cd03592 79 GEPNNGRNENCLEIYIKDN---GKWNDEPCSKKKSAICYT 115 (115)
T ss_pred CCCCCCCCCCceEEccCCC---CCCcCcCCCCCccceeCC
Confidence 888763 578998876421 268999999999999974
No 35
>cd03595 CLECT_chondrolectin_like C-type lectin-like domain (CTLD) of the type found in the human type-1A transmembrane proteins chondrolectin (CHODL) and layilin. CLECT_chondrolectin_like: C-type lectin-like domain (CTLD) of the type found in the human type-1A transmembrane proteins chondrolectin (CHODL) and layilin. CTLD refers to a domain homologous to the carbohydrate-recognition domains (CRDs) of the C-type lectins. CHODL is predominantly expressed in muscle cells and is associated with T-cell maturation. Various alternatively spliced isoforms have been of CHODL have been identified. The transmembrane form of CHODL is localized in the ER-Golgi apparatus. Layilin is widely expressed in different cell types. The extracellular CTLD of layilin binds hyaluronan (HA), a major constituent of the extracellular matrix (ECM). The cytoplasmic tail of layilin binds various members of the band 4.1/ERM superfamily (talin, radixin, and merlin). The ERM proteins are cytoskeleton-membrane l
Probab=99.71 E-value=4.9e-17 Score=149.19 Aligned_cols=125 Identities=13% Similarity=0.170 Sum_probs=100.6
Q ss_pred cccccceeccCeeEEEE-----ccCCCCHHHHHHHhhhcCCeeeeeCChhhHHHHHHHhhcc-CCCCceEEEEeecCCC-
Q psy12060 28 RCPQHWVQYRDSCYRFV-----KSPLKTRNDAKLNCKSLDSDLANVNDADEHGFIMYQLFWQ-DPQRRKWYFGGTQQSP- 100 (978)
Q Consensus 28 ~Cp~~w~~~~~~Cy~~~-----~~~~~~~~~A~~~C~~~~~~L~~i~~~~e~~~i~~~~~~~-~~~~~~w~g~~~~~~~- 100 (978)
.|-.++ .++||+++ .. +++|.+|+..|+.+||+||+|+|++|++||..++... .....+||||.+...+
T Consensus 3 ~~~~~~---~~~Cy~~~~~~~~~~-~~tw~~A~~~C~~~g~~LasI~s~~E~~~i~~~i~~~~~~~~~~WIGl~~~~~~~ 78 (149)
T cd03595 3 ICRRGT---EKPCYKIAYFQDSRR-RLNFEEARQACREDGGELLSIESENEQKLIERFIQTLRASDGDFWIGLRRSSQYN 78 (149)
T ss_pred eeccCC---CCccEEEEEEecccc-ccCHHHHHHHHHHcCCEECccCCHHHHHHHHHHHHhhcCCCCcEEEEeECCCCcc
Confidence 466555 58999975 55 5999999999999999999999999999999988543 2345789999987653
Q ss_pred -------ccEEEcCCCCCCcccccCCCCCCCcccCceEEEEeccc-------ccceeeeecCCCcceeeEEE
Q psy12060 101 -------NLWVNEDGTNLNELDAAFLPEPADNVQRDYLAYSFSQS-------LKRWGFERVTGMEPLLFICE 158 (978)
Q Consensus 101 -------~~w~w~dg~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~-------~~~~~~~~~~~~~~~~~~C~ 158 (978)
+.|.|.||+++.+ ..|.+++|+++.++|+.+..... .....|.+..|.....|+|+
T Consensus 79 ~~~~~~~~~~~W~dG~~~~y--~~W~~~eP~~~~~~Cv~l~~~~~~~~~~~~~~~~~W~d~~C~~~~~fICe 148 (149)
T cd03595 79 VTSSACSSLYYWLDGSISTF--RNWYVDEPSCGSEVCVVMYHQPSAPAGQGGPYLFQWNDDNCNMKNNFICK 148 (149)
T ss_pred ccccccCCccEEcCCCccCc--cCCCCCCCCCcccCCEEEEecCCCCcCcCcccCCCccCCCCCCCcccccC
Confidence 4699999999864 56888888887889999875421 11346899999999999997
No 36
>cd03602 CLECT_1 C-type lectin (CTL)/C-type lectin-like (CTLD) domain subgroup 1; a subgroup of protein domains homologous to the carbohydrate-recognition domains (CRDs) of the C-type lectins. CLECT_1: C-type lectin (CTL)/C-type lectin-like (CTLD) domain subgroup 1; a subgroup of protein domains homologous to the carbohydrate-recognition domains (CRDs) of the C-type lectins. Many CTLDs are calcium-dependent carbohydrate binding modules; other CTLDs bind protein ligands, lipids, and inorganic surfaces including CaCO3 and ice. Animal C-type lectins are involved in such functions as extracellular matrix organization, endocytosis, complement activation, pathogen recognition, and cell-cell interactions. CTLDs may bind a variety of carbohydrate ligands including mannose, N-acetylglucosamine, galactose, N-acetylgalactosamine, and fucose. CTLDs associate with each other through several different surfaces to form dimers, trimers, or tetramers from which ligand-binding sites project in differe
Probab=99.70 E-value=8.2e-17 Score=139.72 Aligned_cols=108 Identities=18% Similarity=0.199 Sum_probs=91.9
Q ss_pred eeEEEEccCCCCHHHHHHHhhhcCCeeeeeCChhhHHHHHHHhhccCCCCceEEEEeecCCCccEEEcCCCCCCcccccC
Q psy12060 39 SCYRFVKSPLKTRNDAKLNCKSLDSDLANVNDADEHGFIMYQLFWQDPQRRKWYFGGTQQSPNLWVNEDGTNLNELDAAF 118 (978)
Q Consensus 39 ~Cy~~~~~~~~~~~~A~~~C~~~~~~L~~i~~~~e~~~i~~~~~~~~~~~~~w~g~~~~~~~~~w~w~dg~~~~~~~~~~ 118 (978)
.||+|+..+ ++|.+|+.+|+.+||+||+|+|.+|++||..++. .....+|||+.+. ++.|.|.||++..+ ..|
T Consensus 1 ~~y~~~~~~-~~w~~A~~~C~~~g~~La~i~s~~e~~~l~~~~~--~~~~~~WiGl~~~--~~~~~W~dg~~~~~--~~w 73 (108)
T cd03602 1 RTFYLVNES-KTWSEAQQYCRENYTDLATVQNQEDNALLSNLSR--VSNSAAWIGLYRD--VDSWRWSDGSESSF--RNW 73 (108)
T ss_pred CceEEeccc-cCHHHHHHHHHHHCCccCeecCHHHHHHHHHHHh--ccCCcEEEEEECC--CCceEEcCCCCCcc--Ccc
Confidence 489999995 9999999999999999999999999999999885 2345799999987 88999999999654 457
Q ss_pred CCCCCCcccCceEEEEecccccceeeeecCCCcceeeEEEe
Q psy12060 119 LPEPADNVQRDYLAYSFSQSLKRWGFERVTGMEPLLFICEA 159 (978)
Q Consensus 119 ~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~C~~ 159 (978)
.+++|.. .++|+.+... + .|.+..|.....|+|+.
T Consensus 74 ~~~~~~~-~~~C~~~~~~-~----~w~~~~C~~~~~fIC~~ 108 (108)
T cd03602 74 NTFQPFG-QGDCATMYSS-G----RWYAALCSALKPFICYD 108 (108)
T ss_pred CCCCCCC-CCCeeEECcC-C----eECcccCCCCcCEeccC
Confidence 7776543 5899988654 2 78999999999999974
No 37
>cd03600 CLECT_thrombomodulin_like C-type lectin-like domain (CTLD) of the type found in human thrombomodulin(TM), Endosialin, C14orf27, and C1qR. CLECT_thrombomodulin_like: C-type lectin-like domain (CTLD) of the type found in human thrombomodulin(TM), Endosialin, C14orf27, and C1qR. CTLD refers to a domain homologous to the carbohydrate-recognition domains (CRDs) of the C-type lectins. In these thrombomodulin-like proteins the residues involved in coordinating Ca2+ in the classical MBP-A CTLD are not conserved. TM exerts anti-fibrinolytic and anti-inflammatory activity. TM also regulates blood coagulation in the anticoagulant protein C pathway. In this pathway, the procoagulant properties of thrombin (T) are lost when it binds TM. TM also plays a key role in tumor biology. It is expressed on endothelial cells and on several type of tumor cell including squamous cell carcinoma. Loss of TM expression correlates with advanced stage and poor prognosis. Loss of function of TM func
Probab=99.70 E-value=1.7e-16 Score=144.95 Aligned_cols=122 Identities=19% Similarity=0.244 Sum_probs=96.7
Q ss_pred ccCeeEEEEccCCCCHHHHHHHhhhcCCeeeeeCChhhHHHHHHHhhccC-----CCCceEEEEeecC--------CCcc
Q psy12060 36 YRDSCYRFVKSPLKTRNDAKLNCKSLDSDLANVNDADEHGFIMYQLFWQD-----PQRRKWYFGGTQQ--------SPNL 102 (978)
Q Consensus 36 ~~~~Cy~~~~~~~~~~~~A~~~C~~~~~~L~~i~~~~e~~~i~~~~~~~~-----~~~~~w~g~~~~~--------~~~~ 102 (978)
++++||+++... ++|.+|+.+|+++||+||+|+|++|++||..++.... ....+|||+.+.. .++.
T Consensus 2 ~~~~Cy~~~~~~-~sw~~A~~~C~~~gg~La~i~s~~E~~~v~~~l~~~~~~~~~~~~~~WIGl~~~~~~~~~~~~~~~~ 80 (141)
T cd03600 2 VSDACYTLHPQK-LTFLEAQRSCIELGGNLATVRSGEEADVVSLLLAAGPGRHGRGSLRLWIGLQREPRQCSDPSLPLRG 80 (141)
T ss_pred CCCceEEEeCCc-cCHHHHHHHHHhhCCEeeecCCHHHHHHHHHHHhhccccccCCCccEEEeEecCcccCccccccCCc
Confidence 478999999995 9999999999999999999999999999999885542 2457899999853 3478
Q ss_pred EEEcCCCCCCcccccCCCCCCCc-ccCceEEEEeccc-ccceeeeecCCCcce-eeEEEe
Q psy12060 103 WVNEDGTNLNELDAAFLPEPADN-VQRDYLAYSFSQS-LKRWGFERVTGMEPL-LFICEA 159 (978)
Q Consensus 103 w~w~dg~~~~~~~~~~~~~~~~~-~~~~c~~~~~~~~-~~~~~~~~~~~~~~~-~~~C~~ 159 (978)
|.|.||+....+ ..|.+++++. ..++|+.+..... ...+.|.+..|.... .|+|+.
T Consensus 81 f~W~d~~~~~~y-~~W~~~p~n~~~~~~Cv~l~~~~~~~~~~~W~d~~C~~~~~~fIC~~ 139 (141)
T cd03600 81 FSWVTGDQDTDF-SNWLQEPAGTCTSPRCVALSAAGSTPDNLKWKDGPCSARADGYLCKF 139 (141)
T ss_pred cEECCCCCCCCc-cccccCCCCCCCCCccEEEEccCCCCCCCccccCCcCCCCCCeEEee
Confidence 999998765443 5688875444 4689999976542 124578999999874 799996
No 38
>cd05850 Ig1_Contactin-2 First Ig domain of contactin-2. Ig1_Contactin-2: First Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c
Probab=99.63 E-value=4.8e-15 Score=123.76 Aligned_cols=93 Identities=34% Similarity=0.673 Sum_probs=76.5
Q ss_pred CCeeEeCCCceEecCCCccccCcEEEEEEeecCCCCeEEEEEcccccccccccccCCCCCCceEeecceEEEeCCCCCCC
Q psy12060 189 GPYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVED 268 (978)
Q Consensus 189 ~P~~~~~p~~~~~~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~d 268 (978)
+|.|..+|.+.++.++. .|++++|+|.+.|+|.|+|+|+|+|.++. .....++.+.+++|.|.++...+|
T Consensus 1 ~P~f~~~P~~~~~~~~~--~g~~v~l~C~a~g~P~p~i~W~~~g~~l~--------~~~~~~~~~~~g~L~I~~~~~~~D 70 (94)
T cd05850 1 GPVFEEQPSSLLFPEGS--PEEKVTLGCRARASPPATYRWKMNGTEIK--------FAPESRYTLVAGNLVINNPQKARD 70 (94)
T ss_pred CCeeEECCCCEEecCCC--CCCeEEEEeEceeCCCCEEEEEECCEECc--------cCCCceEEEECCeEEEccCCccCc
Confidence 47899999999987765 37889999999999999999999997642 112345666788999988645699
Q ss_pred CeEEEEEEEeCceeEEeEEEEEE
Q psy12060 269 RGSYHCKASNKFGSIISESVQLA 291 (978)
Q Consensus 269 ~G~Y~C~a~n~~g~~~s~~~~l~ 291 (978)
+|.|+|.|+|..|...|..+.|.
T Consensus 71 ~G~Y~C~A~N~~G~~~s~~a~l~ 93 (94)
T cd05850 71 AGSYQCLAINRCGTVVSREANLR 93 (94)
T ss_pred CEEEEEEEEcCcCcEEEEEEEEe
Confidence 99999999999999988877764
No 39
>cd05849 Ig1_Contactin-1 First Ig domain of contactin-1. Ig1_Contactin-1: First Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may, through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.
Probab=99.60 E-value=8.8e-15 Score=121.29 Aligned_cols=92 Identities=34% Similarity=0.717 Sum_probs=74.5
Q ss_pred CCeeEeCCCceEecCCCccccCcEEEEEEeecCCCCeEEEEEcccccccccccccCCCCCCceEeecceEEEeCCCCCCC
Q psy12060 189 GPYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVED 268 (978)
Q Consensus 189 ~P~~~~~p~~~~~~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~d 268 (978)
+|.|+.+|.+.++.++. .|..+.|.|.+.|+|.|+|+|+|++.++.. ...++...++.|.|.++.+.+|
T Consensus 1 ~P~f~~~P~~~~~~~~~--~~~~v~l~C~a~G~P~P~i~W~k~~~~i~~---------~~~~~~~~~g~L~I~~~~~~~D 69 (93)
T cd05849 1 GPVFEEQPIDTIYPEES--TEGKVSVNCRARANPFPIYKWRKNNLDIDL---------TNDRYSMVGGNLVINNPDKYKD 69 (93)
T ss_pred CCEEEECCCCEEecCCc--cCCeEEEeCcCccCCCCEEEEEECCEEccC---------CCCeEEEECCEEEECcCCcCCC
Confidence 48899999998877654 356799999999999999999999865421 2335666788999988644689
Q ss_pred CeEEEEEEEeCceeEEeEEEEEE
Q psy12060 269 RGSYHCKASNKFGSIISESVQLA 291 (978)
Q Consensus 269 ~G~Y~C~a~n~~g~~~s~~~~l~ 291 (978)
+|.|+|.|+|..|...+..++|.
T Consensus 70 ~G~Y~C~A~N~~G~~~s~~a~l~ 92 (93)
T cd05849 70 AGRYVCIVSNIYGKVRSREATLS 92 (93)
T ss_pred CEEEEEEEEeCcceEEEccEEEe
Confidence 99999999999999888877764
No 40
>cd05848 Ig1_Contactin-5 First Ig domain of contactin-5. Ig1_Contactin-5: First Ig domain of the neural cell adhesion molecule contactin-5. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains, anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. In rats, a lack of contactin-5 (NB-2) results in an impairment of the neuronal activity in the auditory system. Contactin-5 is expressed specifically in the postnatal nervous system, peaking at about 3 weeks postnatal. Contactin-5 is highly expressed in the adult human brain in the occipital lobe and in the amygdala; lower levels of expression have been detected in the corpus callosum, caudate nucleus, and spinal cord.
Probab=99.60 E-value=1.2e-14 Score=121.33 Aligned_cols=92 Identities=41% Similarity=0.806 Sum_probs=73.5
Q ss_pred CCeeEeCCCceEecCCCccccCcEEEEEEeecCCCCeEEEEEcccccccccccccCCCCCCceEeecceEEEeCCCCCCC
Q psy12060 189 GPYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVED 268 (978)
Q Consensus 189 ~P~~~~~p~~~~~~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~d 268 (978)
+|.|+.+|.+.++..+ ..|+.++|.|.+.|.|.|+|+|+|+|.++. .....++...++.|.|.++...+|
T Consensus 1 ~P~f~~~p~~~~~~~~--~~g~~v~l~C~~~G~P~P~i~W~k~g~~l~--------~~~~~~~~~~~g~L~i~~~~~~~D 70 (94)
T cd05848 1 GPVFVQEPDDAIFPTD--SDEKKVILNCEARGNPVPTYRWLRNGTEID--------TESDYRYSLIDGNLIISNPSEVKD 70 (94)
T ss_pred CCeeEECCCcEEccCC--CCCCEEEEEEEeeecCCCEEEEEECCeECc--------cCCCceEEeeCCeEEEccCCccCc
Confidence 4789999999876543 247889999999999999999999997652 112345566778999988645699
Q ss_pred CeEEEEEEEeCceeEEeEEEEE
Q psy12060 269 RGSYHCKASNKFGSIISESVQL 290 (978)
Q Consensus 269 ~G~Y~C~a~n~~g~~~s~~~~l 290 (978)
+|.|+|.|.|..|...|..+.|
T Consensus 71 ~G~Y~C~A~N~~G~~~S~~~~l 92 (94)
T cd05848 71 SGRYQCLATNSIGSILSREALL 92 (94)
T ss_pred CEEEEEEEEcCCCeEEeccEEE
Confidence 9999999999999988877665
No 41
>cd05851 Ig3_Contactin-1 Third Ig domain of contactin-1. Ig3_Contactin-1: Third Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.
Probab=99.52 E-value=6.5e-14 Score=115.23 Aligned_cols=78 Identities=32% Similarity=0.572 Sum_probs=69.6
Q ss_pred CCCCCCCcEEEEEEEeecCCCeeEEEEcCccCCCCceeeecccEEEeCCCCCCCCeEEEEEEEeCCCceEEEEEEEEE
Q psy12060 409 EAPKAGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYFENFNRILTIPNVKVEDQGEYICRASNDRSALESSVTISIQ 486 (978)
Q Consensus 409 ~~v~~G~~~~l~C~~~g~p~~~v~W~~~~~~l~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~ 486 (978)
..+.+|+.++|.|.+.|+|.|.|+|+|++.++....+....+..|.|.+++.+|+|.|+|.|.|..|.....+.|.|+
T Consensus 11 ~~~~~G~~v~l~C~~~G~P~P~v~W~k~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~V~ 88 (88)
T cd05851 11 TYALKGQNVTLECFALGNPVPVIRWRKILEPMPATAEISMSGAVLKIFNIQPEDEGTYECEAENIKGKDKHQARVYVQ 88 (88)
T ss_pred EEEeCCCcEEEEEEecccCCCEEEEEECCcCCCCCCEEecCCCEEEECcCChhhCEEEEEEEEcCCCceEEEEEEEEC
Confidence 356799999999999999999999999999887766655566789999999999999999999999999999888773
No 42
>cd05762 Ig8_MLCK Eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK). Ig8_MLCK: the eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK). MLCK is a key regulator of different forms of cell motility involving actin and myosin II. Agonist stimulation of smooth muscle cells increases cytosolic Ca2+, which binds calmodulin. This Ca2+-calmodulin complex in turn binds to and activates MLCK. Activated MLCK leads to the phosphorylation of the 20 kDa myosin regulatory light chain (RLC) of myosin II and the stimulation of actin-activated myosin MgATPase activity. MLCK is widely present in vertebrate tissues; it phosphorylates the 20 kDa RLC of both smooth and nonmuscle myosin II. Phosphorylation leads to the activation of the myosin motor domain and altered structural properties of myosin II. In smooth muscle MLCK it is involved in initiating contraction. In nonmuscle cells, MLCK may participate in cell division and cell motility; it has
Probab=99.51 E-value=2.2e-13 Score=114.43 Aligned_cols=85 Identities=22% Similarity=0.365 Sum_probs=75.7
Q ss_pred cceeecCCCeEEEEEeeccCCCCeeEEeeCCEEecCCCcEEEee---cCcEEEccccCCCCEEEEEEEEeCCceeeeeEE
Q psy12060 596 SETYAGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFE---NGNLLISPVSRDDSGIYSCTATNVHGMDESKGR 672 (978)
Q Consensus 596 ~~~~~~~g~~~~l~C~~~~~p~~~i~W~~~g~~~~~~~~~~~~~---~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~ 672 (978)
....+..|+.+.|.|.+.|.|+|++.|+|+|..+..+.++.+.. .+.|.|.++..+|+|.|+|.|.|..|...+++.
T Consensus 8 ~~~~v~~G~~v~l~C~~~G~p~p~v~W~kdg~~l~~~~~~~~~~~~~~s~L~I~~~~~~D~G~Ytc~a~N~~G~~~~~~~ 87 (98)
T cd05762 8 EDMKVRAGESVELFCKVTGTQPITCTWMKFRKQIQEGEGIKIENTENSSKLTITEGQQEHCGCYTLEVENKLGSRQAQVN 87 (98)
T ss_pred cCEEEECCCEEEEEEEEcccCCCceEEEECCEEecCCCcEEEEecCCeeEEEECCCChhhCEEEEEEEEcCCCceeEEEE
Confidence 34568899999999999999999999999999998777666653 345999999999999999999999999999999
Q ss_pred EEEEeCCc
Q psy12060 673 LIVLHGPS 680 (978)
Q Consensus 673 l~v~~~p~ 680 (978)
|.|...|.
T Consensus 88 l~V~~~P~ 95 (98)
T cd05762 88 LTVVDKPD 95 (98)
T ss_pred EEEecCCC
Confidence 99998775
No 43
>cd05852 Ig5_Contactin-1 Fifth Ig domain of contactin-1. Ig5_Contactin-1: fifth Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.
Probab=99.50 E-value=1e-13 Score=108.84 Aligned_cols=73 Identities=42% Similarity=0.778 Sum_probs=67.8
Q ss_pred CCeEEEEEeeccCCCCeeEEeeCCEEecCCCcEEEeecCcEEEccccCCCCEEEEEEEEeCCceeeeeEEEEE
Q psy12060 603 GGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTATNVHGMDESKGRLIV 675 (978)
Q Consensus 603 g~~~~l~C~~~~~p~~~i~W~~~g~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v 675 (978)
|+++.|.|.+.|.|.|+|.|+|++..+..+.++.+..+++|.|.+++.+|+|.|+|.|.|..|...+++.|.|
T Consensus 1 G~~~~l~C~~~g~P~p~v~W~k~~~~l~~~~r~~~~~~g~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~~ 73 (73)
T cd05852 1 GGRVIIECKPKAAPKPKFSWSKGTELLVNNSRISIWDDGSLEILNITKLDEGSYTCFAENNRGKANSTGVLSV 73 (73)
T ss_pred CCeEEEEEecceeCCCEEEEEeCCEecccCCCEEEcCCCEEEECcCChhHCEEEEEEEECCCCceeEEEEEEC
Confidence 6889999999999999999999999888888888888899999999999999999999999999999888764
No 44
>cd05762 Ig8_MLCK Eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK). Ig8_MLCK: the eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK). MLCK is a key regulator of different forms of cell motility involving actin and myosin II. Agonist stimulation of smooth muscle cells increases cytosolic Ca2+, which binds calmodulin. This Ca2+-calmodulin complex in turn binds to and activates MLCK. Activated MLCK leads to the phosphorylation of the 20 kDa myosin regulatory light chain (RLC) of myosin II and the stimulation of actin-activated myosin MgATPase activity. MLCK is widely present in vertebrate tissues; it phosphorylates the 20 kDa RLC of both smooth and nonmuscle myosin II. Phosphorylation leads to the activation of the myosin motor domain and altered structural properties of myosin II. In smooth muscle MLCK it is involved in initiating contraction. In nonmuscle cells, MLCK may participate in cell division and cell motility; it has
Probab=99.50 E-value=1.2e-13 Score=116.06 Aligned_cols=81 Identities=20% Similarity=0.314 Sum_probs=71.8
Q ss_pred CCCCCCCcEEEEEEEeecCCCeeEEEEcCccCCCCceee----ecccEEEeCCCCCCCCeEEEEEEEeCCCceEEEEEEE
Q psy12060 409 EAPKAGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYFE----NFNRILTIPNVKVEDQGEYICRASNDRSALESSVTIS 484 (978)
Q Consensus 409 ~~v~~G~~~~l~C~~~g~p~~~v~W~~~~~~l~~~~~~~----~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~ 484 (978)
..+.+|+.+.|.|.+.|.|.+++.|+|++.+|....++. ...+.|.|.++..+|+|.|+|.|.|..|....++.|.
T Consensus 10 ~~v~~G~~v~l~C~~~G~p~p~v~W~kdg~~l~~~~~~~~~~~~~~s~L~I~~~~~~D~G~Ytc~a~N~~G~~~~~~~l~ 89 (98)
T cd05762 10 MKVRAGESVELFCKVTGTQPITCTWMKFRKQIQEGEGIKIENTENSSKLTITEGQQEHCGCYTLEVENKLGSRQAQVNLT 89 (98)
T ss_pred EEEECCCEEEEEEEEcccCCCceEEEECCEEecCCCcEEEEecCCeeEEEECCCChhhCEEEEEEEEcCCCceeEEEEEE
Confidence 456799999999999999999999999999997554332 2357899999999999999999999999999999999
Q ss_pred EEeec
Q psy12060 485 IQAEP 489 (978)
Q Consensus 485 V~~~p 489 (978)
|.++|
T Consensus 90 V~~~P 94 (98)
T cd05762 90 VVDKP 94 (98)
T ss_pred EecCC
Confidence 99876
No 45
>cd05852 Ig5_Contactin-1 Fifth Ig domain of contactin-1. Ig5_Contactin-1: fifth Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.
Probab=99.49 E-value=1.3e-13 Score=108.22 Aligned_cols=72 Identities=29% Similarity=0.523 Sum_probs=63.9
Q ss_pred CCcEEEEEEEeecCCCeeEEEEcCccCCCCceeee-cccEEEeCCCCCCCCeEEEEEEEeCCCceEEEEEEEE
Q psy12060 414 GDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYFEN-FNRILTIPNVKVEDQGEYICRASNDRSALESSVTISI 485 (978)
Q Consensus 414 G~~~~l~C~~~g~p~~~v~W~~~~~~l~~~~~~~~-~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V 485 (978)
|+++.|.|.+.|.|.|+|+|+|++..+....++.. .+++|.|.+++.+|+|.|+|.|.|..|..+.++.|.|
T Consensus 1 G~~~~l~C~~~g~P~p~v~W~k~~~~l~~~~r~~~~~~g~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~~ 73 (73)
T cd05852 1 GGRVIIECKPKAAPKPKFSWSKGTELLVNNSRISIWDDGSLEILNITKLDEGSYTCFAENNRGKANSTGVLSV 73 (73)
T ss_pred CCeEEEEEecceeCCCEEEEEeCCEecccCCCEEEcCCCEEEECcCChhHCEEEEEEEECCCCceeEEEEEEC
Confidence 78899999999999999999999998766555443 5678999999999999999999999999999988865
No 46
>cd05745 Ig3_Peroxidasin Third immunoglobulin (Ig)-like domain of peroxidasin. Ig3_Peroxidasin: the third immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells which have undergone programmed cell death, and protection of the organism against non-self.
Probab=99.49 E-value=1.4e-13 Score=109.50 Aligned_cols=74 Identities=32% Similarity=0.663 Sum_probs=67.7
Q ss_pred CCCeEEEEEeeccCCCCeeEEeeCCEEecCCCcEEEeecCcEEEccccCCCCEEEEEEEEeCCceeeeeEEEEE
Q psy12060 602 EGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTATNVHGMDESKGRLIV 675 (978)
Q Consensus 602 ~g~~~~l~C~~~~~p~~~i~W~~~g~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v 675 (978)
+|+++.|.|.+.|.|.|.++|+|+|..+..+.+..+..+++|.|.++..+|+|.|+|.|.|..|....++.|.|
T Consensus 1 eG~~v~l~C~~~g~P~p~i~W~k~g~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~~L~V 74 (74)
T cd05745 1 EGQTVDFLCEAQGYPQPVIAWTKGGSQLSVDRRHLVLSSGTLRISRVALHDQGQYECQAVNIVGSQRTVAQLTV 74 (74)
T ss_pred CCCeEEEEeECCEecCCEEEEEECCEECCCCCCeEEccCCeEEEeeCCHHhCEEEEEEEEeCCCceeEEEEEeC
Confidence 58999999999999999999999999988777776777889999999999999999999999999998888764
No 47
>cd05851 Ig3_Contactin-1 Third Ig domain of contactin-1. Ig3_Contactin-1: Third Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.
Probab=99.48 E-value=1.9e-13 Score=112.49 Aligned_cols=87 Identities=22% Similarity=0.349 Sum_probs=74.8
Q ss_pred eceeeccCCcccccCCCceeEEEEeecCCCCeeEEeECCEECCCCCCCCCCCCcEEEecCEEEEEeCCCCCCCeEEEEEE
Q psy12060 488 EPNFTIPLTDKHMDNQADLTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQDNVLTIRYLNPERDPAMYQCRA 567 (978)
Q Consensus 488 ~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~i~W~~~g~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~d~G~Y~C~a 567 (978)
+|.|...+.+..+.+|+.+.|.|.+.|.|.|.++|+|++..+.. ..++...++.|.|.++.. +|+|.|+|.|
T Consensus 1 ~p~i~~~~~~~~~~~G~~v~l~C~~~G~P~P~v~W~k~~~~~~~-------~~~~~~~~~~L~I~~v~~-~D~G~Y~C~A 72 (88)
T cd05851 1 PADINVKFKDTYALKGQNVTLECFALGNPVPVIRWRKILEPMPA-------TAEISMSGAVLKIFNIQP-EDEGTYECEA 72 (88)
T ss_pred CCceEEccccEEEeCCCcEEEEEEecccCCCEEEEEECCcCCCC-------CCEEecCCCEEEECcCCh-hhCEEEEEEE
Confidence 47778888888999999999999999999999999999987752 234445567899999996 9999999999
Q ss_pred EcCCCceeeEEEEEE
Q psy12060 568 KNQLKTRYSSAQLRV 582 (978)
Q Consensus 568 ~n~~g~~~~~~~l~v 582 (978)
.|..|.....+.|.|
T Consensus 73 ~N~~G~~~~~~~l~V 87 (88)
T cd05851 73 ENIKGKDKHQARVYV 87 (88)
T ss_pred EcCCCceEEEEEEEE
Confidence 999999888887766
No 48
>cd04967 Ig1_Contactin First Ig domain of contactin. Ig1_Contactin: First Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 weeks postnata
Probab=99.47 E-value=4.3e-13 Score=111.78 Aligned_cols=90 Identities=38% Similarity=0.774 Sum_probs=70.9
Q ss_pred CCeeEeCCCceEecCCCccccCcEEEEEEeecCCCCeEEEEEcccccccccccccCCCCCCceEeecceEEEeCCCCCCC
Q psy12060 189 GPYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVED 268 (978)
Q Consensus 189 ~P~~~~~p~~~~~~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~d 268 (978)
+|.|+.+|.+.++..+. .|++++|.|.+.|+|.|+++|+|++..+.. ....++...++.|.|.++.+.+|
T Consensus 1 ~P~f~~~p~~~~~~~~~--~~~~~~l~C~~~g~p~p~i~W~k~~~~l~~--------~~~~~~~~~~~~L~i~~~~~~~d 70 (91)
T cd04967 1 GPVFEEQPDDTIFPEES--DEGKVSLNCRARGSPPPTYRWLMNGTEIDD--------EPDSRYSLVGGNLVISNPSKAKD 70 (91)
T ss_pred CCeeEeCCCCEEccCCC--CCCEEEEEEeeeEcCCCEEEEEECCEECCC--------CCCCCEEEECCEEEEecCCccCC
Confidence 47899999998876543 356799999999999999999999865421 12345566778999988744699
Q ss_pred CeEEEEEEEeCceeEEeEEE
Q psy12060 269 RGSYHCKASNKFGSIISESV 288 (978)
Q Consensus 269 ~G~Y~C~a~n~~g~~~s~~~ 288 (978)
+|.|+|.|.|..|...|..+
T Consensus 71 ~G~Y~C~a~N~~G~~~S~~~ 90 (91)
T cd04967 71 AGRYQCLASNIVGTVLSREA 90 (91)
T ss_pred CEEEEEEEEcCCCEEEeccc
Confidence 99999999999999877644
No 49
>cd05745 Ig3_Peroxidasin Third immunoglobulin (Ig)-like domain of peroxidasin. Ig3_Peroxidasin: the third immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells which have undergone programmed cell death, and protection of the organism against non-self.
Probab=99.47 E-value=2e-13 Score=108.63 Aligned_cols=73 Identities=32% Similarity=0.555 Sum_probs=64.2
Q ss_pred CCCcEEEEEEEeecCCCeeEEEEcCccCCCCcee-eecccEEEeCCCCCCCCeEEEEEEEeCCCceEEEEEEEE
Q psy12060 413 AGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYF-ENFNRILTIPNVKVEDQGEYICRASNDRSALESSVTISI 485 (978)
Q Consensus 413 ~G~~~~l~C~~~g~p~~~v~W~~~~~~l~~~~~~-~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V 485 (978)
+|+++.|.|.+.|.|.|.|+|+|++..+...... ...+++|.|.+++.+|+|.|+|.|.|..|..+.++.|.|
T Consensus 1 eG~~v~l~C~~~g~P~p~i~W~k~g~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~~L~V 74 (74)
T cd05745 1 EGQTVDFLCEAQGYPQPVIAWTKGGSQLSVDRRHLVLSSGTLRISRVALHDQGQYECQAVNIVGSQRTVAQLTV 74 (74)
T ss_pred CCCeEEEEeECCEecCCEEEEEECCEECCCCCCeEEccCCeEEEeeCCHHhCEEEEEEEEeCCCceeEEEEEeC
Confidence 5899999999999999999999999988654432 334578999999999999999999999999999888865
No 50
>cd05863 Ig2_VEGFR-3 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3). Ig2_VEGFR-3: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-3 (Flt-4) binds two members of the VEGF family (VEGF-C and -D) and is involved in tumor angiogenesis and growth.
Probab=99.46 E-value=3.6e-13 Score=102.56 Aligned_cols=66 Identities=23% Similarity=0.465 Sum_probs=57.8
Q ss_pred EEEEEEEeecCCCeeEEEEcCccCCCCceeeecccEEEeCCCCCCCCeEEEEEEEeCCCceEEEEEEEEE
Q psy12060 417 VRLECVAFGYPVPSYNWTRRGSPLPRNAYFENFNRILTIPNVKVEDQGEYICRASNDRSALESSVTISIQ 486 (978)
Q Consensus 417 ~~l~C~~~g~p~~~v~W~~~~~~l~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~ 486 (978)
++|.|.+.|.|.|.++|+|||.+|... ...+.|.|.++..+|+|.|+|.|+|..|..+.++.|.|.
T Consensus 1 ~~l~c~v~g~P~P~v~W~kdg~~l~~~----~~~~~L~i~~v~~~D~G~YtC~a~N~~g~~~~~~~~~l~ 66 (67)
T cd05863 1 VKLPVKVAAYPPPEFQWYKDGKLISGK----HSQHSLQIKDVTEASAGTYTLVLWNSAAGLEKRISLELI 66 (67)
T ss_pred CEEEEEEEEeCCCEEEEEECCEECccc----CCcCEEEECCCCHHHCEEEEEEEEECCccEEEEEEEEEE
Confidence 479999999999999999999999632 235689999999999999999999999988888777664
No 51
>PHA02911 C-type lectin-like protein; Provisional
Probab=99.45 E-value=1.9e-13 Score=121.10 Aligned_cols=110 Identities=15% Similarity=0.119 Sum_probs=80.4
Q ss_pred cccccccceeccCeeEEEEccC-CCCHHHHHHHhhhcCCeeeeeCChhhHHHHHHHhhccCCCCceEEEEeecCCCccEE
Q psy12060 26 ELRCPQHWVQYRDSCYRFVKSP-LKTRNDAKLNCKSLDSDLANVNDADEHGFIMYQLFWQDPQRRKWYFGGTQQSPNLWV 104 (978)
Q Consensus 26 ~~~Cp~~w~~~~~~Cy~~~~~~-~~~~~~A~~~C~~~~~~L~~i~~~~e~~~i~~~~~~~~~~~~~w~g~~~~~~~~~w~ 104 (978)
..+||++|..|+++||+|+... ..+|.+|+++|..+||+|+. .+.+|++||+++ |.|.. +.|.
T Consensus 100 ~~pC~~nW~~H~nkCYlFS~~s~sWsW~~Srr~C~~kGATLLk-~sdEELeFIqn~----------wkGks-----~~~f 163 (213)
T PHA02911 100 EPICSRDWINHMGICLLSLGEEVGFRMEIAKRFCEKKDADLIG-KIDEEKKALENI----------WTGND-----HSRF 163 (213)
T ss_pred CCCCchhhHhhCCEEEEEeccccccchhHHHHHHHhcCCEecc-CcHHHHHHHHHH----------Hhccc-----cceE
Confidence 3468899999999999999983 13459999999999999999 777999999853 44432 4677
Q ss_pred EcCCCCCCcccccCCCCCCCcccCceEEEEecccccceeeeecCCCcceeeEEEec
Q psy12060 105 NEDGTNLNELDAAFLPEPADNVQRDYLAYSFSQSLKRWGFERVTGMEPLLFICEAS 160 (978)
Q Consensus 105 w~dg~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~C~~~ 160 (978)
|.||...+. ..+..++|+.....--...-.+.+..|+....++|++.
T Consensus 164 WID~r~ngS---------t~n~s~sCA~Is~~~~~~~~~V~sesCs~~~~wICqK~ 210 (213)
T PHA02911 164 WIDNRAAAS---------TFDPVNECAIGTQNHIPEVPEVLKSPCDERHSFICIKK 210 (213)
T ss_pred EecCccccc---------eecCCCCeEEEEcccccCCCceEccccCCCceEEEEec
Confidence 777732111 11225689888764111112678899999999999984
No 52
>cd05867 Ig4_L1-CAM_like Fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). Ig4_L1-CAM_like: fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.
Probab=99.45 E-value=7.1e-13 Score=106.06 Aligned_cols=72 Identities=25% Similarity=0.543 Sum_probs=63.3
Q ss_pred CCcEEEEEEEeecCCCeeEEEEcCccCCCCc---eeeecccEEEeCCCCCCCCeEEEEEEEeCCCceEEEEEEEE
Q psy12060 414 GDKVRLECVAFGYPVPSYNWTRRGSPLPRNA---YFENFNRILTIPNVKVEDQGEYICRASNDRSALESSVTISI 485 (978)
Q Consensus 414 G~~~~l~C~~~g~p~~~v~W~~~~~~l~~~~---~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V 485 (978)
|++++|.|.+.|.|.|+|+|+|+|.++.... +....++.|.|.+++.+|+|.|+|.|.|..|.....+.|.|
T Consensus 1 G~~v~l~C~~~G~P~p~i~W~k~g~~i~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~V 75 (76)
T cd05867 1 GETARLDCQVEGIPTPNITWSINGAPIEGTDPDPRRHVSSGALILTDVQPSDTAVYQCEARNRHGNLLANAHVHV 75 (76)
T ss_pred CCeEEEEEEeeEeCCCeEEEEECCEECCCCCCCceEEeeCCEEEECCCChhhCEEEEEEEECCCCeEEEEEEEEE
Confidence 7899999999999999999999999886432 33445678999999999999999999999999998888876
No 53
>cd04975 Ig4_SCFR_like Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR) and similar proteins. Ig4_SCFR_like; fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR). In addition to SCFR this group also includes the fourth Ig domain of platelet-derived growth factor receptors (PDGFR), alpha and beta, the fourth Ig domain of macrophage colony stimulating factor (M-CSF), and the Ig domain of the receptor tyrosine kinase KIT. SCFR and the PDGFR alpha and beta have similar organization: an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR, this fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth SCFR_Ig-like domain abolishes
Probab=99.44 E-value=4.4e-13 Score=112.41 Aligned_cols=78 Identities=19% Similarity=0.296 Sum_probs=66.7
Q ss_pred CCCCCCCcEEEEEEEee-cCCCeeEEEEcCccCCCCce-e-ee-------cccEEEeCCCCCCCCeEEEEEEEeCCCceE
Q psy12060 409 EAPKAGDKVRLECVAFG-YPVPSYNWTRRGSPLPRNAY-F-EN-------FNRILTIPNVKVEDQGEYICRASNDRSALE 478 (978)
Q Consensus 409 ~~v~~G~~~~l~C~~~g-~p~~~v~W~~~~~~l~~~~~-~-~~-------~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~ 478 (978)
..+.+|+++.|.|.+.| .|+|++.|+|||.+|..... . .. ....|.|..+..+|+|.|+|.|.|..|..+
T Consensus 13 ~~v~~G~~v~L~c~v~g~~P~p~v~W~Kdg~~i~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Ytc~A~N~~G~~~ 92 (101)
T cd04975 13 IFVNLGENLNLVVEVEAYPPPPHINWTYDNRTLTNKLTEIVTSENESEYRYVSELKLVRLKESEAGTYTFLASNSDASKS 92 (101)
T ss_pred EEEECCCCEEEEEEEEecCCCCccEEEeCCeeCCCCcceeEEEeccCcceEEEEEEEeecCHhhCeeEEEEEECCCccEE
Confidence 35678999999999999 89999999999999975432 1 11 136799999999999999999999999999
Q ss_pred EEEEEEEE
Q psy12060 479 SSVTISIQ 486 (978)
Q Consensus 479 ~~~~l~V~ 486 (978)
.++.|.|.
T Consensus 93 ~t~~L~V~ 100 (101)
T cd04975 93 LTFELYVN 100 (101)
T ss_pred EEEEEEEE
Confidence 99998886
No 54
>cd05728 Ig4_Contactin-2-like Fourth Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins. Ig4_Contactin-2-like: fourth Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.
Probab=99.44 E-value=6.6e-13 Score=108.76 Aligned_cols=77 Identities=30% Similarity=0.591 Sum_probs=69.4
Q ss_pred CCCCCCCcEEEEEEEeecCCCeeEEEEcCccCCCCceeeecccEEEeCCCCCCCCeEEEEEEEeCCCceEEEEEEEE
Q psy12060 409 EAPKAGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYFENFNRILTIPNVKVEDQGEYICRASNDRSALESSVTISI 485 (978)
Q Consensus 409 ~~v~~G~~~~l~C~~~g~p~~~v~W~~~~~~l~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V 485 (978)
..+..|++++|.|.+.|.|.|.+.|+|++.++....+....++.|.|.++..+|+|.|+|.|.|..|....++.|.|
T Consensus 9 ~~~~~G~~~~l~C~~~g~p~p~v~W~k~g~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~V 85 (85)
T cd05728 9 TEADIGSSLRWECKASGNPRPAYRWLKNGQPLASENRIEVEAGDLRITKLSLSDSGMYQCVAENKHGTIYASAELAV 85 (85)
T ss_pred cEEcCCCcEEEEEEeeEeCCCEEEEEECCEECCCCCeEEEeCCEEEEeeCCHHHCEEEEEEEECCCCeEEEEEEEEC
Confidence 45679999999999999999999999999999776666666789999999999999999999999999988888765
No 55
>cd05868 Ig4_NrCAM Fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule). Ig4_ NrCAM: fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six IG-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. NrCAM is primarily expressed in the nervous system.
Probab=99.43 E-value=1.1e-12 Score=104.64 Aligned_cols=73 Identities=25% Similarity=0.418 Sum_probs=62.9
Q ss_pred CCcEEEEEEEeecCCCeeEEEEcCccCCCCc---eeeecccEEEeCCCCCCCCeEEEEEEEeCCCceEEEEEEEEE
Q psy12060 414 GDKVRLECVAFGYPVPSYNWTRRGSPLPRNA---YFENFNRILTIPNVKVEDQGEYICRASNDRSALESSVTISIQ 486 (978)
Q Consensus 414 G~~~~l~C~~~g~p~~~v~W~~~~~~l~~~~---~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~ 486 (978)
|++++|.|.+.|.|.|+|+|+|+|.++.... .....+..|.|.+++.+|+|.|+|.|.|..|...+++.|.|.
T Consensus 1 g~~~~l~C~a~G~P~P~i~W~k~g~~i~~~~~~~~~~~~~~~l~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~v~ 76 (76)
T cd05868 1 GEDGTLICRANGNPKPSISWLTNGVPIEIAPTDPSRKVDGDTIIFSKVQERSSAVYQCNASNEYGYLLANAFVNVL 76 (76)
T ss_pred CCCEEEEEEeeEeCCCeEEEEECCEEccccCCCceEEecCCEEEECCCCHhhCEEEEEEEEcCCCEEEEEEEEEeC
Confidence 7889999999999999999999999985322 122344689999999999999999999999999999998873
No 56
>cd00037 CLECT C-type lectin (CTL)/C-type lectin-like (CTLD) domain. CLECT: C-type lectin (CTL)/C-type lectin-like (CTLD) domain; protein domains homologous to the carbohydrate-recognition domains (CRDs) of the C-type lectins. This group is chiefly comprised of eukaryotic CTLDs, but contains some, as yet functionally uncharacterized, bacterial CTLDs. Many CTLDs are calcium-dependent carbohydrate binding modules; other CTLDs bind protein ligands, lipids, and inorganic surfaces, including CaCO3 and ice. Animal C-type lectins are involved in such functions as extracellular matrix organization, endocytosis, complement activation, pathogen recognition, and cell-cell interactions. For example: mannose-binding lectin and lung surfactant proteins A and D bind carbohydrates on surfaces (e.g. pathogens, allergens, necrotic, and apoptotic cells) and mediate functions associated with killing and phagocytosis; P (platlet)-, E (endothelial)-, and L (leukocyte)- selectins (sels) mediate the initia
Probab=99.43 E-value=8.5e-13 Score=117.49 Aligned_cols=115 Identities=26% Similarity=0.418 Sum_probs=95.4
Q ss_pred eeEEEEccCCCCHHHHHHHhhhcCCeeeeeCChhhHHHHHHHhhccCCCCceEEEEeecCCCccEEEcCCCCCCcccccC
Q psy12060 39 SCYRFVKSPLKTRNDAKLNCKSLDSDLANVNDADEHGFIMYQLFWQDPQRRKWYFGGTQQSPNLWVNEDGTNLNELDAAF 118 (978)
Q Consensus 39 ~Cy~~~~~~~~~~~~A~~~C~~~~~~L~~i~~~~e~~~i~~~~~~~~~~~~~w~g~~~~~~~~~w~w~dg~~~~~~~~~~ 118 (978)
.||+++.. +++|.+|++.|+.+||.|++|++.+|++||.+++.. .....+|+|+.+....+.|.|.||.....+ ..|
T Consensus 1 ~Cy~~~~~-~~~~~~A~~~C~~~~~~L~~~~~~~e~~~i~~~~~~-~~~~~~wvg~~~~~~~~~~~~~~~~~~~~~-~~w 77 (116)
T cd00037 1 SCYKFSTE-KLTWEEAQEYCRSLGGHLASIHSEEENDFLASLLKK-SSSSDVWIGLNDLSSEGTWKWSDGSPLVDY-TNW 77 (116)
T ss_pred CCEEEcCC-ccCHHHHHHHHHHcCCEEcccCCHHHHHHHHHHHhC-CCCCCEEEcccccCcCCCeEecCCCccccc-cCC
Confidence 49999999 499999999999999999999999999999999864 345679999999887899999999984333 345
Q ss_pred CCCCC-CcccCceEEEEecccccceeeeecCCCcceeeEEEe
Q psy12060 119 LPEPA-DNVQRDYLAYSFSQSLKRWGFERVTGMEPLLFICEA 159 (978)
Q Consensus 119 ~~~~~-~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~C~~ 159 (978)
..++| ....++|+.+.... ...|.+..|.....|+|+.
T Consensus 78 ~~~~~~~~~~~~C~~~~~~~---~~~~~~~~C~~~~~~iC~~ 116 (116)
T cd00037 78 APGEPNPGGSEDCVVLSSSS---DGKWNDVSCSSKLPFICEK 116 (116)
T ss_pred CCCCcCCCCCCCeeEEccCC---CCCccCCCCCCCceeeecC
Confidence 55555 45678999987664 3378999999999999973
No 57
>cd05892 Ig_Myotilin_C C-terminal immunoglobulin (Ig)-like domain of myotilin. Ig_Myotilin_C: C-terminal immunoglobulin (Ig)-like domain of myotilin. Mytolin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to the latter family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Myotilin is most abundant in skeletal and cardiac muscle, and is involved in maintaining sarcomere integrity. It binds to alpha-actinin, filamin and actin. Mutations in myotilin lead to muscle disorders.
Probab=99.43 E-value=7.9e-13 Score=104.04 Aligned_cols=69 Identities=26% Similarity=0.423 Sum_probs=58.4
Q ss_pred EEEEEEEeecCCCeeEEEEcCccCCCC-ceee---ecc--cEEEeCCCCCCCCeEEEEEEEeCCCceEEEEEEEE
Q psy12060 417 VRLECVAFGYPVPSYNWTRRGSPLPRN-AYFE---NFN--RILTIPNVKVEDQGEYICRASNDRSALESSVTISI 485 (978)
Q Consensus 417 ~~l~C~~~g~p~~~v~W~~~~~~l~~~-~~~~---~~~--~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V 485 (978)
+.|.|.+.|.|.|.|.|+|++..|... .++. ... .+|.|.++..+|+|.|+|.|.|..|..+.++.|.|
T Consensus 1 v~l~C~v~G~P~P~i~W~k~~~~i~~~~~r~~~~~~~~g~~~L~I~~~~~~D~G~Y~C~A~N~~G~~~~~a~L~V 75 (75)
T cd05892 1 VKLECQISAIPPPKIFWKRNNEMVQYNTDRISLYQDNSGRVTLLIKNVNKKDAGWYTVSAVNEAGVATCHARLDV 75 (75)
T ss_pred CEEEEEEEecCCCeEEEEECCEECcCCCCeEEEEEcCCCcEEEEECCCChhhCEEEEEEEEcCcCeEEEEEEEeC
Confidence 579999999999999999999998632 3322 112 27999999999999999999999999999988875
No 58
>cd05723 Ig4_Neogenin Fourth immunoglobulin (Ig)-like domain in neogenin and similar proteins. Ig4_Neogenin: fourth immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.
Probab=99.42 E-value=1.1e-12 Score=103.04 Aligned_cols=71 Identities=28% Similarity=0.554 Sum_probs=64.7
Q ss_pred eEEEEEeeccCCCCeeEEeeCCEEecCCCcEEEeecCcEEEccccCCCCEEEEEEEEeCCceeeeeEEEEE
Q psy12060 605 NVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTATNVHGMDESKGRLIV 675 (978)
Q Consensus 605 ~~~l~C~~~~~p~~~i~W~~~g~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v 675 (978)
++.|.|.+.|.|.|.++|+|+|..+....++.+..++.|.|.++..+|+|.|+|.|.|..|...+++.|.|
T Consensus 1 ~v~l~C~~~G~P~p~v~W~k~g~~~~~~~~~~~~~~~~l~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~L~V 71 (71)
T cd05723 1 DVIFECEVTGKPTPTVKWVKNGDMVIPSDYFKIVKEHNLQVLGLVKSDEGFYQCIAENDVGNVQASAQLII 71 (71)
T ss_pred CEEEEEEEEEeCCCEEEEEECCeECCCCCCEEEEecCCEEEEcCCcccCEEEEEEEEcCCCEEEEEEEEEC
Confidence 47899999999999999999999888777777777888999999999999999999999999999888764
No 59
>cd04976 Ig2_VEGFR Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR). Ig2_VEGFR: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A. VEGFR-1 may play an inhibitory part in these processes by binding VEGF and interfering with its interaction with VEGFR-2. VEGFR-1 has a signa
Probab=99.42 E-value=9.7e-13 Score=103.11 Aligned_cols=70 Identities=29% Similarity=0.495 Sum_probs=62.4
Q ss_pred EEEEEEEeecCCCeeEEEEcCccCCCCceeeecccEEEeCCCCCCCCeEEEEEEEeCCCceEEEEEEEEE
Q psy12060 417 VRLECVAFGYPVPSYNWTRRGSPLPRNAYFENFNRILTIPNVKVEDQGEYICRASNDRSALESSVTISIQ 486 (978)
Q Consensus 417 ~~l~C~~~g~p~~~v~W~~~~~~l~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~ 486 (978)
+.|.|.+.|.|.|.++|+|+|.++....+......+|.|.++..+|+|.|+|.|.|..|..+.++.+.|.
T Consensus 1 ~~l~c~v~g~P~p~v~W~k~g~~l~~~~~~~~~~~~L~I~~v~~~D~G~YtC~a~N~~g~~~~~~~~~~~ 70 (71)
T cd04976 1 VRLPVKVKAYPPPEIQWYKNGKLISEKNRTKKSGHSLTIKDVTEEDAGNYTVVLTNKQAKLEKRLTFTLV 70 (71)
T ss_pred CEEEeEEEEeCCCEEEEEECCEECCCCCEEEcCCCEEEECcCCHHHCEEEEEEEEcCCccEEEEEEEEEE
Confidence 4799999999999999999999998776666667899999999999999999999999998888777664
No 60
>cd05892 Ig_Myotilin_C C-terminal immunoglobulin (Ig)-like domain of myotilin. Ig_Myotilin_C: C-terminal immunoglobulin (Ig)-like domain of myotilin. Mytolin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to the latter family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Myotilin is most abundant in skeletal and cardiac muscle, and is involved in maintaining sarcomere integrity. It binds to alpha-actinin, filamin and actin. Mutations in myotilin lead to muscle disorders.
Probab=99.42 E-value=1e-12 Score=103.39 Aligned_cols=70 Identities=33% Similarity=0.668 Sum_probs=60.4
Q ss_pred EEEEEeeccCCCCeeEEeeCCEEecC-CCcEEEeec--C--cEEEccccCCCCEEEEEEEEeCCceeeeeEEEEE
Q psy12060 606 VTIFCNPEAAPKPKFVWKKDGNIIGS-GGRRKIFEN--G--NLLISPVSRDDSGIYSCTATNVHGMDESKGRLIV 675 (978)
Q Consensus 606 ~~l~C~~~~~p~~~i~W~~~g~~~~~-~~~~~~~~~--~--~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v 675 (978)
+.|.|.+.|.|.|.|.|+|+|..+.. ..++.+..+ + +|.|.++..+|+|.|+|.|.|..|....++.|.|
T Consensus 1 v~l~C~v~G~P~P~i~W~k~~~~i~~~~~r~~~~~~~~g~~~L~I~~~~~~D~G~Y~C~A~N~~G~~~~~a~L~V 75 (75)
T cd05892 1 VKLECQISAIPPPKIFWKRNNEMVQYNTDRISLYQDNSGRVTLLIKNVNKKDAGWYTVSAVNEAGVATCHARLDV 75 (75)
T ss_pred CEEEEEEEecCCCeEEEEECCEECcCCCCeEEEEEcCCCcEEEEECCCChhhCEEEEEEEEcCcCeEEEEEEEeC
Confidence 47999999999999999999999874 355555433 2 6999999999999999999999999999988865
No 61
>cd04975 Ig4_SCFR_like Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR) and similar proteins. Ig4_SCFR_like; fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR). In addition to SCFR this group also includes the fourth Ig domain of platelet-derived growth factor receptors (PDGFR), alpha and beta, the fourth Ig domain of macrophage colony stimulating factor (M-CSF), and the Ig domain of the receptor tyrosine kinase KIT. SCFR and the PDGFR alpha and beta have similar organization: an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR, this fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth SCFR_Ig-like domain abolishes
Probab=99.41 E-value=1.3e-12 Score=109.52 Aligned_cols=81 Identities=19% Similarity=0.317 Sum_probs=69.0
Q ss_pred cceeecCCCeEEEEEeecc-CCCCeeEEeeCCEEecCCCcEEEee--------cCcEEEccccCCCCEEEEEEEEeCCce
Q psy12060 596 SETYAGEGGNVTIFCNPEA-APKPKFVWKKDGNIIGSGGRRKIFE--------NGNLLISPVSRDDSGIYSCTATNVHGM 666 (978)
Q Consensus 596 ~~~~~~~g~~~~l~C~~~~-~p~~~i~W~~~g~~~~~~~~~~~~~--------~~~l~i~~~~~~d~G~Y~C~a~n~~g~ 666 (978)
....+.+|+++.|.|.+.| .|+|.+.|+|||..+.......+.. .++|.|..+..+|+|.|+|.|.|..|.
T Consensus 11 ~~~~v~~G~~v~L~c~v~g~~P~p~v~W~Kdg~~i~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Ytc~A~N~~G~ 90 (101)
T cd04975 11 TTIFVNLGENLNLVVEVEAYPPPPHINWTYDNRTLTNKLTEIVTSENESEYRYVSELKLVRLKESEAGTYTFLASNSDAS 90 (101)
T ss_pred ceEEEECCCCEEEEEEEEecCCCCccEEEeCCeeCCCCcceeEEEeccCcceEEEEEEEeecCHhhCeeEEEEEECCCcc
Confidence 4556889999999999999 8899999999999998655433322 256999999999999999999999999
Q ss_pred eeeeEEEEEE
Q psy12060 667 DESKGRLIVL 676 (978)
Q Consensus 667 ~~~~~~l~v~ 676 (978)
....+.|.|.
T Consensus 91 ~~~t~~L~V~ 100 (101)
T cd04975 91 KSLTFELYVN 100 (101)
T ss_pred EEEEEEEEEE
Confidence 9988888874
No 62
>cd05730 Ig3_NCAM-1_like Third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). Ig3_NCAM-1_like: domain similar to the third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1,and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the
Probab=99.41 E-value=2.4e-12 Score=108.56 Aligned_cols=90 Identities=33% Similarity=0.593 Sum_probs=74.1
Q ss_pred CccccCCCCcceeecCCCeEEEEEeeccCCCCeeEEeeCCEEecCC-CcEEEeecC-cEEEccccCCCCEEEEEEEEeCC
Q psy12060 587 PSFKKRPLESETYAGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSG-GRRKIFENG-NLLISPVSRDDSGIYSCTATNVH 664 (978)
Q Consensus 587 p~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~i~W~~~g~~~~~~-~~~~~~~~~-~l~i~~~~~~d~G~Y~C~a~n~~ 664 (978)
|.+..........+..|+++.|.|.+.|.|.|.+.|+++|..+... .++.....+ .|.|.+++.+|+|.|+|.|.|..
T Consensus 2 p~i~~~~~~~~~~~~~G~~v~L~C~~~g~P~p~v~W~k~g~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~ 81 (95)
T cd05730 2 PTIRARQSEVNATANLGQSVTLACDADGFPEPTMTWTKDGEPIESGEEKYSFNEDGSEMTILDVDKLDEAEYTCIAENKA 81 (95)
T ss_pred CccccCCcccceEEeCCCCEEEEEeccEeCCCEEEEEECCEECcCCCCEEEEeCCCCEEEECCCChhhCEEEEEEEEcCC
Confidence 4444444445556889999999999999999999999999988765 444444343 59999999999999999999999
Q ss_pred ceeeeeEEEEEE
Q psy12060 665 GMDESKGRLIVL 676 (978)
Q Consensus 665 g~~~~~~~l~v~ 676 (978)
|....++.|.|.
T Consensus 82 G~~~~~~~L~V~ 93 (95)
T cd05730 82 GEQEAEIHLKVF 93 (95)
T ss_pred CeEEEEEEEEEE
Confidence 999999888875
No 63
>cd05739 Ig3_RPTP_IIa_LAR_like Third immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. Ig3_RPTP_IIa_LAR_like: domain similar to the third immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple IG-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains. Included in this group is Drosophila LAR (DLAR).
Probab=99.41 E-value=1.4e-12 Score=101.22 Aligned_cols=68 Identities=26% Similarity=0.583 Sum_probs=58.8
Q ss_pred CCcEEEEEEEeecCCCeeEEEEcCccCCCCceeeecccEEEeCCCCCCCCeEEEEEEEeCCCceEEEEEE
Q psy12060 414 GDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYFENFNRILTIPNVKVEDQGEYICRASNDRSALESSVTI 483 (978)
Q Consensus 414 G~~~~l~C~~~g~p~~~v~W~~~~~~l~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l 483 (978)
|++++|.|.+.|.|.|+|+|+|++.++............|.|.++. |+|.|+|.|.|..|..+.++.|
T Consensus 1 G~~v~L~C~a~G~P~P~v~W~k~g~~l~~~~~~~~~~~~L~i~~~~--d~G~Y~C~A~N~~G~~~~~a~l 68 (69)
T cd05739 1 GGSVNLTCVAVGAPMPYVKWMKGGEELTKEDEMPVGRNVLELTNIY--ESANYTCVAISSLGMIEATAQV 68 (69)
T ss_pred CCeEEEEEEeeecCCCEEEEEECCEECCCccceecCccEEEEeccc--cCeeEEEEEEeCCCEEEEEEEE
Confidence 6889999999999999999999999887665554555689999974 8999999999999998888776
No 64
>cd05893 Ig_Palladin_C C-terminal immunoglobulin (Ig)-like domain of palladin. Ig_Palladin_C: C-terminal immunoglobulin (Ig)-like domain of palladin. Palladin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to this family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Palladin binds to alpha-actinin ezrin, vasodilator-stimulated phosphoprotein VASP, SPIN90 (DIP, mDia interacting protein), and Src. Palladin also binds F-actin directly, via its Ig3 domain. Palladin is expressed as several alternatively spliced isoforms, having various combinations of Ig-like domains, in a cell-type-specific manner. It has been suggested that palladin's different Ig-like domains may be specialized for distinct functions.
Probab=99.41 E-value=1e-12 Score=103.73 Aligned_cols=69 Identities=29% Similarity=0.470 Sum_probs=58.2
Q ss_pred EEEEEEEeecCCCeeEEEEcCccCCCC-ceeee--cc---cEEEeCCCCCCCCeEEEEEEEeCCCceEEEEEEEE
Q psy12060 417 VRLECVAFGYPVPSYNWTRRGSPLPRN-AYFEN--FN---RILTIPNVKVEDQGEYICRASNDRSALESSVTISI 485 (978)
Q Consensus 417 ~~l~C~~~g~p~~~v~W~~~~~~l~~~-~~~~~--~~---~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V 485 (978)
++|.|.+.|.|.|+|+|+|++..+... .++.. .+ .+|.|.++..+|+|.|+|.|.|..|..+.++.|.|
T Consensus 1 v~l~C~v~G~P~P~v~W~k~~~~l~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~a~L~V 75 (75)
T cd05893 1 VRLECRVSGVPHPQIFWKKENESLTHNTDRVSMHQDNCGYICLLIQGATKEDAGWYTVSAKNEAGIVSCTARLDV 75 (75)
T ss_pred CEEEEEEeEecCCEEEEEECCEECCCCCCeEEEEEcCCCEEEEEECCCCHHHCEEEEEEEEcCCCEEEEEEEEeC
Confidence 579999999999999999999998643 23222 11 26999999999999999999999999999988875
No 65
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=99.40 E-value=4.9e-07 Score=112.96 Aligned_cols=521 Identities=13% Similarity=0.103 Sum_probs=279.1
Q ss_pred CCCCeEEEEEE--EeCceeEEeEEEEEEEeeecc-cccCCCCeeeecccCeEEEeCCCCCCCCceEEEeccccccccccc
Q psy12060 266 VEDRGSYHCKA--SNKFGSIISESVQLAFGFIGE-FNLKRAPEIGNQNWGKAMFCDPPTNYPGVNYYWARDYFPNFVEED 342 (978)
Q Consensus 266 ~~d~G~Y~C~a--~n~~g~~~s~~~~l~v~~~~~-~~~~~~~~~~~~~~~~~l~C~~~~~~p~~~i~W~~~~~~~~~~~~ 342 (978)
-...|.|+-.. .|..|.. +.+..+.|..+.. +........+..+..+.++-....|. +..+.|...+.-......
T Consensus 1480 Y~~~GtYtVtLTvtN~~Gss-t~T~~VtV~~pV~~~tinas~~~vpl~~sV~Fta~~s~Gs-~v~ysWdFGDg~ts~~~n 1557 (2740)
T TIGR00864 1480 FNSPGDFNIRLAAANEVGKN-EATLNVAVKARVRGLTINASLTNVPLNGSVHFEAHLDAGD-DVRFSWILCDHCTPIFGG 1557 (2740)
T ss_pred cCCCceEEEEEEEECCCCce-EEEEEEEEeccccceEEcCCCccccccceEEEEEEccCCC-ceeEEEEeCCCCccccCC
Confidence 34688888765 4777763 3444454433221 22222233333444566664443443 567899876432111100
Q ss_pred ceEEEeeCCcEEEeeeeeecceeeEEEEE--eecccccccCCceeEEEccCCCccccccCCCCC------CCCCCCCCCC
Q psy12060 343 KRVFVSYDGALYFSALEQIDAGNYSCNVQ--SKVSDTGRNGPFFPLKVFPHSNFQQLKFPNNFP------KTFPEAPKAG 414 (978)
Q Consensus 343 ~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~--n~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~------~~~~~~v~~G 414 (978)
. +. .-+-...|.|+-..+ |..|. ....+.+.|..+..-..+....... ......+..|
T Consensus 1558 p--------t~---~yTY~spGtYtVtLTvtN~~Gs---~~~T~~i~V~~~I~GlqI~~~~~~gg~~~~~~~~~~~~~t~ 1623 (2740)
T TIGR00864 1558 N--------TI---FYTFRSVGTFNIIVTAENDVGA---AQASIFLFVLQEIEGLQILGETAEGGGGGVQELDGCYFETN 1623 (2740)
T ss_pred C--------ce---EEeecCCceEEEEEEEecCCCc---cceeEEEEEeecccceEEEeecccccCCcccccccceeccC
Confidence 0 00 012234688876554 54433 2333566666554333333211000 0001233456
Q ss_pred CcEEEEEEEeecCCCeeEEEEcCccCCCCceeeecccEEEeCCCCCCCCeEEE--EEEEeCCCceEEEEEEEEEeec-ee
Q psy12060 415 DKVRLECVAFGYPVPSYNWTRRGSPLPRNAYFENFNRILTIPNVKVEDQGEYI--CRASNDRSALESSVTISIQAEP-NF 491 (978)
Q Consensus 415 ~~~~l~C~~~g~p~~~v~W~~~~~~l~~~~~~~~~~~~L~i~~~~~~d~G~Y~--C~a~n~~g~~~~~~~l~V~~~p-~~ 491 (978)
..+.|.-.+...-...+.|...+..-+........+.... +...+.|.|. -.|+|..|....+..+.|.++- .+
T Consensus 1624 ~~v~l~~~~~~GTnvsysW~~~~~n~~dg~~~~~tGk~~~---vt~~~pG~Y~VtL~aSN~vG~~t~s~~i~v~epi~~L 1700 (2740)
T TIGR00864 1624 HTVQFHAGFKDGTNLSFSWNAILDNEPDGPAFAGSGKGAK---LNPLEAGPCDIFLQAANLLGQATADCTIDFLEPAGNL 1700 (2740)
T ss_pred CEEEeeeccCCCCeeEEEEEEecCCCCCCccccccCceeE---EecCCCceEEEEEEEeecccceeeEEEEEEEEEcCce
Confidence 7777876655334457888662211101110111111222 2236789886 5567888988888888887643 24
Q ss_pred eccCCcccccCCCceeEEEEeecCCCCeeEEeECCEECCCCCCCCCCCCcEEEecCEEEEEeCCCCCCCeEEEE--EEEc
Q psy12060 492 TIPLTDKHMDNQADLTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQDNVLTIRYLNPERDPAMYQC--RAKN 569 (978)
Q Consensus 492 ~~~~~~~~~~~g~~~~l~C~~~~~p~~~i~W~~~g~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~d~G~Y~C--~a~n 569 (978)
.+......+..|+.++|.-...+.....+.|..++..-.. ... ..+.-. . ...|.|.- .|.|
T Consensus 1701 ~L~aS~~~aavn~~V~fs~~lt~GS~vty~W~~gdG~s~~------~s~------p~~tHt---f-~~~G~y~VtVta~N 1764 (2740)
T TIGR00864 1701 MLQASDNPAAVNALINLSAELAEGSGLQYRWFLEEGDDLE------TSE------PFMSHS---F-PSAGLHLVTMKAFN 1764 (2740)
T ss_pred EEeccCCcccCCCeEEEEEEecCCCCcEEEEEECCCCCcc------cCC------CceEEE---c-cCCceEEEEEEEEc
Confidence 4444555678899999998766667889999975532110 000 111111 2 45687755 5678
Q ss_pred CCCceeeEEEEEEEEcCCccccCCCCc--ceeecCCCeEEEEEeeccCCCCeeEEeeCCEEecCCCcEEEeecCcEEEcc
Q psy12060 570 QLKTRYSSAQLRVLTLKPSFKKRPLES--ETYAGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGNLLISP 647 (978)
Q Consensus 570 ~~g~~~~~~~l~v~~~~p~~~~~~~~~--~~~~~~g~~~~l~C~~~~~p~~~i~W~~~g~~~~~~~~~~~~~~~~l~i~~ 647 (978)
..|....+..+.|....-.+.+..... ...+..|..+.|.-.+.......+.|..++..-..+.. ..
T Consensus 1765 ~vss~~~s~~V~VqepV~GL~i~~~~~~~~~~~~ag~~v~F~a~vstGsnVsw~W~f~~g~s~~gk~--------v~--- 1833 (2740)
T TIGR00864 1765 ELGSANASEEVDVQEPISGLKIRAADAGEQNFFAADSSVCFQGELATGTNVSWCWAIDGGSSKMGKH--------AC--- 1833 (2740)
T ss_pred cccccceeEEEEEEeccccceEecCCCCcccceecCcEEEEEEEccCCCeeEEEEEeCCCCccccce--------eE---
Confidence 888887777777765322222221111 11345677888877754444457888876543111111 11
Q ss_pred ccCCCCEEEEE--EEEeCCceeeeeEEEEEEeCCceeeeCCCceEEEccccEEEEEEeeecCCcCeEEEEeeCCEEcccc
Q psy12060 648 VSRDDSGIYSC--TATNVHGMDESKGRLIVLHGPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNM 725 (978)
Q Consensus 648 ~~~~d~G~Y~C--~a~n~~g~~~~~~~l~v~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~~~W~~~g~~~~~~ 725 (978)
.+..+.|.|+. .|.|..+....+..+.|++++.-.........+..|+.++|++.....+ .++|.|..++..-..
T Consensus 1834 ~Tf~~aG~ytV~L~AsN~vs~~~~s~~~~VQe~I~~L~L~as~~~~~~n~~v~fsa~l~~GS--~Vtf~w~fGdgs~~~- 1910 (2740)
T TIGR00864 1834 MTFPDAGTFAIRLNASNAVSGKSASREFFAEEPIFGLELKASKKIAAIGEKVEFQILLAAGS--AVNFRLQIGGAAPEV- 1910 (2740)
T ss_pred EecCCCeEEEEEEEEEcccCcceeeeeEEEEEecceEEEecccccccCCCEEEEEEEecCCC--ceEEEEEeCCCCcee-
Confidence 34567899885 5779999888888999988776555555556778899999999887765 588899876432110
Q ss_pred ccccccCCeeecCCceEEEeccCCCCCEEEEEEEEcCCCceeeeEEEEEcCCCCCCCceEEEE--------eeCCeeEEE
Q psy12060 726 DLNELETPNINIDGGLLEITNASFADAGEYECVVKSTVGKISTKTTVIVEGPPGLPGGVQVVE--------VHKTSATIQ 797 (978)
Q Consensus 726 ~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~c~a~n~~G~~s~~~~l~v~~~P~~P~~~~~~~--------~~~~~v~l~ 797 (978)
...+.++. ..-..-.....+..|.|.++...+...+.|..+ -.++.+.. -....+...
T Consensus 1911 ----------~t~~~t~~-HsY~~~G~Y~VtV~A~N~Vs~~~a~~~V~Vle~---V~gL~I~~~c~~~~~~g~~~tF~A~ 1976 (2740)
T TIGR00864 1911 ----------LQPGPRFS-HSFPRVDDHMVNLRAKNEVSCAQANLHIEVLEA---VRGLQIPDCCAAGIATGEEKNFTAN 1976 (2740)
T ss_pred ----------ecCCCeEE-eecCCCCcEEEEEEEEeccceeeeeEEEEEEEe---ccceEecCCcccceecCceEEEEEE
Confidence 00112221 223333444556777999998888877777543 12232211 111222333
Q ss_pred eecCCCCCCCceeEEEEEeec---cccCceEecccccceeeeecCCceeeEEeeccCCCceeEEEEEEecCCccCC
Q psy12060 798 WTDGATNGRPITHYKIIARTN---WNSTWFNVSEHVIGKEVDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGE 870 (978)
Q Consensus 798 W~~p~~~~~~i~~Y~v~~~~~---~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~L~p~~~Y~~~v~A~N~~G~g~ 870 (978)
+. .|.++ .|.+++... +...|...+..+ .++ +.....|.++|+|.|.+|...
T Consensus 1977 v~----~g~~V-~f~W~f~~~~~~g~~~~~~~G~~v------------ty~----~~~~G~~~I~v~A~N~l~s~n 2031 (2740)
T TIGR00864 1977 VQ----RGKPV-AFAWTFDLHHLHGDSLVIHMGKDV------------SYT----AEAAGLLEIQLGAFNALGAEN 2031 (2740)
T ss_pred Ee----cCCce-EEEEEeeecccCCCcceeecCCce------------EEc----cCCCcEEEEEEEEEcccCccc
Confidence 32 33333 366654422 222232222211 122 344568999999999999754
No 66
>cd05894 Ig_C5_MyBP-C C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C). Ig_C5_MyBP_C : the C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C). MyBP_C consists of repeated domains, Ig and fibronectin type 3, and various linkers. Three isoforms of MYBP_C exist and are included in this group: cardiac(c), and fast and slow skeletal muscle (s) MyBP_C. cMYBP_C has insertions between and inside domains and an additional cardiac-specific Ig domain at the N-terminus. For cMYBP_C an interaction has been demonstrated between this C5 domain and the Ig C8 domain.
Probab=99.40 E-value=1.8e-12 Score=105.91 Aligned_cols=76 Identities=22% Similarity=0.382 Sum_probs=65.0
Q ss_pred CCCCCCcEEEEEEEeecCCCeeEEEEcCccCCCC-ceee----ecccEEEeCCCCCCCCeEEEEEEEeCCCceEEEEEEE
Q psy12060 410 APKAGDKVRLECVAFGYPVPSYNWTRRGSPLPRN-AYFE----NFNRILTIPNVKVEDQGEYICRASNDRSALESSVTIS 484 (978)
Q Consensus 410 ~v~~G~~~~l~C~~~g~p~~~v~W~~~~~~l~~~-~~~~----~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~ 484 (978)
.+.+|+.+.|.|.+.|.|.|.+.|+|++.++... .++. .....|.|.++..+|+|.|+|.|.|..|..+.++.|.
T Consensus 6 ~v~~G~~v~l~c~~~G~P~P~v~W~k~~~~i~~~~~r~~~~~~~~~~~L~I~~~~~~D~G~Y~c~a~N~~G~~~~~~~l~ 85 (86)
T cd05894 6 VVVAGNKLRLDVPISGEPAPTVTWSRGDKAFTETEGRVRVESYKDLSSFVIEGAEREDEGVYTITVTNPVGEDHASLFVK 85 (86)
T ss_pred EEEcCCEEEEEeeEeecCCCeEEEEECCEECccCCCeEEEEEcCCeEEEEECCCccCcCEEEEEEEEeCCCcEEEEEEEE
Confidence 4568999999999999999999999999998643 2222 1246899999999999999999999999999888886
Q ss_pred E
Q psy12060 485 I 485 (978)
Q Consensus 485 V 485 (978)
|
T Consensus 86 V 86 (86)
T cd05894 86 V 86 (86)
T ss_pred C
Confidence 5
No 67
>cd05735 Ig8_DSCAM Eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM). Ig8_DSCAM: the eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.
Probab=99.40 E-value=1.9e-12 Score=106.41 Aligned_cols=76 Identities=21% Similarity=0.358 Sum_probs=65.1
Q ss_pred CCcEEEEEEEeecCCCeeEEEEcCccCCCC-ceeee--------cccEEEeCCCCCCCCeEEEEEEEeCCCceEEEEEEE
Q psy12060 414 GDKVRLECVAFGYPVPSYNWTRRGSPLPRN-AYFEN--------FNRILTIPNVKVEDQGEYICRASNDRSALESSVTIS 484 (978)
Q Consensus 414 G~~~~l~C~~~g~p~~~v~W~~~~~~l~~~-~~~~~--------~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~ 484 (978)
|+.++|.|.+.|.|++.++|+|++..+... .++.. ..+.|.|.++..+|+|.|+|.|.|..|..+..+.|.
T Consensus 1 g~~~~l~C~~~g~p~~~i~W~k~~~~i~~~~~r~~~~~~~~~~~~~s~L~I~~~~~~D~G~YtC~A~N~~G~~~~~~~L~ 80 (88)
T cd05735 1 GQKKEMSCTAHGEKPIIVRWEKEDRIINPEMSRYLVSTKEVGDEVISTLQILPTVREDSGFFSCHAINSYGEDRGIIQLT 80 (88)
T ss_pred CCeEEEEEEEECCCCCEEEEeeCCEECCCCCCcEEEEEecCCCcEEEEEEECCCCcccCEEEEEEEEcCCCcceEEEEEE
Confidence 789999999999999999999999888543 22211 125799999999999999999999999999999999
Q ss_pred EEeec
Q psy12060 485 IQAEP 489 (978)
Q Consensus 485 V~~~p 489 (978)
|..+|
T Consensus 81 V~~~P 85 (88)
T cd05735 81 VQEPP 85 (88)
T ss_pred EeCCC
Confidence 99776
No 68
>cd05859 Ig4_PDGFR-alpha Fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha. IG4_PDGFR-alpha: The fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha. PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFR alpha binds to all three PDGFs, whereas the PDGFR beta (not included in this group) binds only to PDGF-B. PDGF alpha is organized as an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFR alpha and PDGFR beta are essential for normal development.
Probab=99.40 E-value=1.2e-12 Score=110.09 Aligned_cols=78 Identities=22% Similarity=0.310 Sum_probs=67.0
Q ss_pred CCCCCCCcEEEEEEEeecCCCeeEEEEcCccCCCCcee-e---------ecccEEEeCCCCCCCCeEEEEEEEeCCCceE
Q psy12060 409 EAPKAGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYF-E---------NFNRILTIPNVKVEDQGEYICRASNDRSALE 478 (978)
Q Consensus 409 ~~v~~G~~~~l~C~~~g~p~~~v~W~~~~~~l~~~~~~-~---------~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~ 478 (978)
..+..|+.+.|.|.+.|+|+|.|+|+|+|.+|..+... . ....+|.|.++..+|+|.|+|.|.|..|..+
T Consensus 13 ~~~~~~~~~~l~~~v~g~P~P~v~W~kdg~~l~~~~~~~~~~~~~~~~~~~~s~L~I~~v~~~D~G~Ytc~A~N~~g~~~ 92 (101)
T cd05859 13 EFANLHEVKEFVVEVEAYPPPQIRWLKDNRTLIENLTEITTSEHNVQETRYVSKLKLIRAKEEDSGLYTALAQNEDAVKS 92 (101)
T ss_pred EEEecCCcEEEEEEEEEeCCCceEEEECCEECcCCcceEEeccccccceeeccEEEEeeCCHHHCEEEEEEEEcCCceEE
Confidence 45678999999999999999999999999998755421 1 1236899999999999999999999999999
Q ss_pred EEEEEEEE
Q psy12060 479 SSVTISIQ 486 (978)
Q Consensus 479 ~~~~l~V~ 486 (978)
.++.|.|.
T Consensus 93 ~t~~l~V~ 100 (101)
T cd05859 93 YTFALQIQ 100 (101)
T ss_pred EEEEEEEE
Confidence 99888875
No 69
>cd05740 Ig_CEACAM_D4 Fourth immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM). Ig_CEACAM_D4: immunoglobulin (Ig)-like domain 4 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the
Probab=99.40 E-value=2.2e-12 Score=106.43 Aligned_cols=75 Identities=23% Similarity=0.366 Sum_probs=60.1
Q ss_pred cccCcEEEEEEeecCCCCeEEEEEcccccccccccccCCCCCCceEeecceEEEeCCCCCCCCeEEEEEEEeCceeEEeE
Q psy12060 207 SILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVEDRGSYHCKASNKFGSIISE 286 (978)
Q Consensus 207 ~~g~~~~l~C~~~g~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~d~G~Y~C~a~n~~g~~~s~ 286 (978)
.+|++++|.|.+.|. .|.|.|+|++..+.. ....+...+++|.|.++ +.+|+|.|+|.|.|..|...|.
T Consensus 16 ~~g~~v~l~C~a~g~-~p~i~W~kng~~l~~---------~~~~~~~~~~~L~I~~v-~~~D~G~Y~C~a~N~~G~~~S~ 84 (91)
T cd05740 16 EDNQPVTLTCEAEGQ-ATYIWWVNNGSLLVP---------PRLQLSNDNRTLTFNNV-TRSDTGHYQCEASNEVSNMTSD 84 (91)
T ss_pred ccCCcEEEEEEeCCC-CCEEEEEECCEECCC---------CCEEEeCCCCEEEECcC-ChhhCEEEEEEEEcCCCCEEee
Confidence 457789999999999 999999999865421 11112224568999998 8999999999999999999898
Q ss_pred EEEEEE
Q psy12060 287 SVQLAF 292 (978)
Q Consensus 287 ~~~l~v 292 (978)
.+.|.|
T Consensus 85 ~~~L~V 90 (91)
T cd05740 85 PYILNV 90 (91)
T ss_pred eEEEEe
Confidence 888876
No 70
>cd04969 Ig5_Contactin_like Fifth Ig domain of contactin. Ig5_Contactin_like: Fifth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week
Probab=99.40 E-value=1.8e-12 Score=102.91 Aligned_cols=73 Identities=41% Similarity=0.763 Sum_probs=67.4
Q ss_pred CCeEEEEEeeccCCCCeeEEeeCCEEecCCCcEEEeecCcEEEccccCCCCEEEEEEEEeCCceeeeeEEEEE
Q psy12060 603 GGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTATNVHGMDESKGRLIV 675 (978)
Q Consensus 603 g~~~~l~C~~~~~p~~~i~W~~~g~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v 675 (978)
|+.+.|.|.+.|.|.|.++|++++..+....+..+..+++|.|.+++.+|+|.|+|.|.|..|....++.|.|
T Consensus 1 G~~v~L~C~~~g~P~p~v~W~k~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V 73 (73)
T cd04969 1 GGDVIIECKPKAAPKPTISWSKGTELLTNSSRICIWPDGSLEILNVTKSDEGKYTCFAENFFGKANSTGSLSV 73 (73)
T ss_pred CCeEEEEEeeeEcCCCEEEEEECCEEcccCCCEEECCCCeEEEccCChhHCEEEEEEEECCCCceEEEEEEEC
Confidence 6889999999999999999999999988887888877889999999999999999999999999998888764
No 71
>cd07693 Ig1_Robo First immunoglobulin (Ig)-like domain in Robo (roundabout) receptors and similar proteins. Ig1_Robo: domain similar to the first immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit res
Probab=99.39 E-value=2.5e-12 Score=110.50 Aligned_cols=95 Identities=26% Similarity=0.500 Sum_probs=67.7
Q ss_pred CCeeEeCCCceEecCCCccccCcEEEEEEeecCCCCeEEEEEcccccccccccccCCCCCCceEeecceEEEeC---C-C
Q psy12060 189 GPYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGNLIIND---P-R 264 (978)
Q Consensus 189 ~P~~~~~p~~~~~~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~---~-~ 264 (978)
+|.|+..|.+..+.+ |+.++|.|.+.|.|.|.+.|+|+|..+.... . .....+....++.+.+.. . .
T Consensus 1 ~P~i~~~p~~~~v~~-----G~~~~l~C~~~g~P~p~i~W~k~g~~l~~~~---~-~~~~~~~~~~~~~~~~~~i~~~~~ 71 (100)
T cd07693 1 PPRIVEHPSDLIVSK-----GDPATLNCKAEGRPTPTIQWLKNGQPLETDK---D-DPRSHRIVLPSGSLFFLRVVHGRK 71 (100)
T ss_pred CCeEEecCceeEEcC-----CCeEEEEeeCCcCCCCEEEEEECCEECcccc---C-CCCcceEEecCCcEEEEEeeccCC
Confidence 478888898887654 5569999999999999999999997653210 0 001122233344433222 1 2
Q ss_pred CCCCCeEEEEEEEeCceeEEeEEEEEEE
Q psy12060 265 QVEDRGSYHCKASNKFGSIISESVQLAF 292 (978)
Q Consensus 265 ~~~d~G~Y~C~a~n~~g~~~s~~~~l~v 292 (978)
+.+|+|.|+|.|.|..|...+..+.|.|
T Consensus 72 ~~~D~G~Y~C~a~N~~G~~~s~~~~l~v 99 (100)
T cd07693 72 GRSDEGVYVCVAHNSLGEAVSRNASLEV 99 (100)
T ss_pred CcCcCEEEEEEEEccccceecceEEEEe
Confidence 6899999999999999998888888876
No 72
>cd04968 Ig3_Contactin_like Third Ig domain of contactin. Ig3_Contactin_like: Third Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week
Probab=99.39 E-value=2.9e-12 Score=106.15 Aligned_cols=77 Identities=34% Similarity=0.622 Sum_probs=67.6
Q ss_pred CCCCCCcEEEEEEEeecCCCeeEEEEcCccCCCCceeeecccEEEeCCCCCCCCeEEEEEEEeCCCceEEEEEEEEE
Q psy12060 410 APKAGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYFENFNRILTIPNVKVEDQGEYICRASNDRSALESSVTISIQ 486 (978)
Q Consensus 410 ~v~~G~~~~l~C~~~g~p~~~v~W~~~~~~l~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~ 486 (978)
.+.+|+.++|.|.+.|.|.|.++|+|++..+.........+..|.|.+++.+|+|.|+|.|.|..|....++.|.|+
T Consensus 12 ~~~~g~~v~l~C~~~g~P~p~v~W~k~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V~ 88 (88)
T cd04968 12 YALKGQNVTLECFALGNPVPQIKWRKVDGSMPSSAEISMSGAVLKIPNIQFEDEGTYECEAENIKGKDTHQGRIYVQ 88 (88)
T ss_pred EEeCCCcEEEEEEeeEeCCCEEEEEECCCcCCCccEEEEeCCEEEECCCCcccCEEEEEEEEECCCcEEEEEEEEEC
Confidence 45689999999999999999999999988776555444566899999999999999999999999999988888773
No 73
>cd04978 Ig4_L1-NrCAM_like Fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related). Ig4_L1-NrCAM_like: fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related). These proteins belong to the L1 subfamily of cell adhesion molecules (CAMs) and are comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. These molecules are primarily expressed in the nervous system. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.
Probab=99.39 E-value=2.3e-12 Score=103.71 Aligned_cols=72 Identities=29% Similarity=0.492 Sum_probs=63.7
Q ss_pred CCcEEEEEEEeecCCCeeEEEEcCccCCCCc---eeeecccEEEeCCCCCCCCeEEEEEEEeCCCceEEEEEEEE
Q psy12060 414 GDKVRLECVAFGYPVPSYNWTRRGSPLPRNA---YFENFNRILTIPNVKVEDQGEYICRASNDRSALESSVTISI 485 (978)
Q Consensus 414 G~~~~l~C~~~g~p~~~v~W~~~~~~l~~~~---~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V 485 (978)
|+.++|.|.+.|.|.|+|.|++++..+.... ........|.|.+++.+|+|.|+|.|.|..|.....+.|.|
T Consensus 1 G~~~~l~C~~~g~P~p~i~W~~~g~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~V 75 (76)
T cd04978 1 GETGRLDCEAEGIPQPTITWRLNGVPIEELPPDPRRRVDGGTLILSNVQPNDTAVYQCNASNVHGYLLANAFVHV 75 (76)
T ss_pred CCeEEEEEEceeeCCCEEEEEECCEECCCCCCcceEEccCCEEEECCCChhhCEEEEEEEEccCCeEEEeEEEEE
Confidence 7899999999999999999999999886543 23445678999999999999999999999999999988877
No 74
>cd05723 Ig4_Neogenin Fourth immunoglobulin (Ig)-like domain in neogenin and similar proteins. Ig4_Neogenin: fourth immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.
Probab=99.39 E-value=2.1e-12 Score=101.51 Aligned_cols=70 Identities=29% Similarity=0.546 Sum_probs=60.0
Q ss_pred cEEEEEEEeecCCCeeEEEEcCccCCCCceee-ecccEEEeCCCCCCCCeEEEEEEEeCCCceEEEEEEEE
Q psy12060 416 KVRLECVAFGYPVPSYNWTRRGSPLPRNAYFE-NFNRILTIPNVKVEDQGEYICRASNDRSALESSVTISI 485 (978)
Q Consensus 416 ~~~l~C~~~g~p~~~v~W~~~~~~l~~~~~~~-~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V 485 (978)
+++|.|.+.|.|.|.|+|+|++..+....+.. ...+.|.|.+++.+|+|.|+|.|.|..|..+.++.|.|
T Consensus 1 ~v~l~C~~~G~P~p~v~W~k~g~~~~~~~~~~~~~~~~l~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~L~V 71 (71)
T cd05723 1 DVIFECEVTGKPTPTVKWVKNGDMVIPSDYFKIVKEHNLQVLGLVKSDEGFYQCIAENDVGNVQASAQLII 71 (71)
T ss_pred CEEEEEEEEEeCCCEEEEEECCeECCCCCCEEEEecCCEEEEcCCcccCEEEEEEEEcCCCEEEEEEEEEC
Confidence 47899999999999999999999886554332 23457889999999999999999999999999988865
No 75
>cd05727 Ig2_Contactin-2-like Second Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins. Ig2_Contactin-2-like: second Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.
Probab=99.39 E-value=1.8e-12 Score=105.49 Aligned_cols=79 Identities=44% Similarity=0.863 Sum_probs=64.9
Q ss_pred CCCeeeecccCeEEEeCCCCCCCCceEEEecccccccccccceEEEee-CCcEEEeeeeeecceeeEEEEEeeccccccc
Q psy12060 302 RAPEIGNQNWGKAMFCDPPTNYPGVNYYWARDYFPNFVEEDKRVFVSY-DGALYFSALEQIDAGNYSCNVQSKVSDTGRN 380 (978)
Q Consensus 302 ~~~~~~~~~~~~~l~C~~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~-~~~L~i~~~~~~d~G~Y~C~~~n~~~~~~~~ 380 (978)
..+..+.+|.++.|.|..+.|.|++.|.|++++.+..+..+.+..+.. +|.|.|.+++.+|+|.|+|.|+|.....+.-
T Consensus 10 ~~~~~v~eG~~~~L~C~pP~g~P~p~~~W~k~~~~~~~~~d~r~~~~~~~G~L~fs~v~~~D~g~Y~C~A~n~~~~~~~~ 89 (96)
T cd05727 10 RDEVKVKEGWGVVLFCDPPPHYPDLSYRWLLNEFPNFIPEDGRRFVSQTNGNLYIAKVEASDRGNYSCFVSSPSSTKSVF 89 (96)
T ss_pred cCceeeeeCCcEEEeeCCCCCCCCCEEEEEECCcccccccCCCeEEeCCCCcEEEeecCHhhCceeEEEEEecccCCccc
Confidence 455678889999999999999999999999998875444444444554 7999999999999999999999987655433
No 76
>cd05737 Ig_Myomesin_like_C C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein. Ig_Myomesin_like_C: domain similar to the C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein. Myomesin and M-protein are both structural proteins localized to the M-band, a transverse structure in the center of the sarcomere, and are candidates for M-band bridges. Both proteins are modular, consisting mainly of repetitive Ig-like and fibronectin type III (FnIII) domains. Myomesin is expressed in all types of vertebrate striated muscle; M-protein has a muscle-type specific expression pattern. Myomesin is present in both slow and fast fibers; M-protein is present only in fast fibers. It has been suggested that myomesin acts as a molecular spring with alternative splicing as a means of modifying its elasticity.
Probab=99.39 E-value=1.8e-12 Score=108.22 Aligned_cols=76 Identities=28% Similarity=0.460 Sum_probs=65.0
Q ss_pred CCCCCCcEEEEEEEeecCCCeeEEEEcCccCCCCceee-----ecccEEEeCCCCCCCCeEEEEEEEeCCCceEEEEEEE
Q psy12060 410 APKAGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYFE-----NFNRILTIPNVKVEDQGEYICRASNDRSALESSVTIS 484 (978)
Q Consensus 410 ~v~~G~~~~l~C~~~g~p~~~v~W~~~~~~l~~~~~~~-----~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~ 484 (978)
.+.+|++++|.|.+.|.|.|+|.|+|++.++....++. .....|.|.+++.+|+|.|+|.|.|..|..+..+.|.
T Consensus 12 ~v~~G~~v~L~C~v~G~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~v~ 91 (92)
T cd05737 12 TIMEGKTLNLTCTVFGDPDPEVSWLKNDQALALSDHYNVKVEQGKYASLTIKGVSSEDSGKYGIVVKNKYGGETVDVTVS 91 (92)
T ss_pred EEeCCCcEEEEEEEEecCCCeEEEEECCEECccCCCEEEEEcCCCEEEEEEccCChhhCEEEEEEEEECCCcceEEEEEe
Confidence 56799999999999999999999999999986554322 1234799999999999999999999999998888876
Q ss_pred E
Q psy12060 485 I 485 (978)
Q Consensus 485 V 485 (978)
|
T Consensus 92 v 92 (92)
T cd05737 92 V 92 (92)
T ss_pred C
Confidence 5
No 77
>cd05854 Ig6_Contactin-2 Sixth Ig domain of contactin-2. Ig6_Contactin-2: Sixth Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c
Probab=99.39 E-value=2.6e-12 Score=104.67 Aligned_cols=75 Identities=23% Similarity=0.458 Sum_probs=63.3
Q ss_pred CcEEEEEEEeecCCC--eeEEEEcCccCCCCc---ee---e--ecccEEEeCCCCCCCCeEEEEEEEeCCCceEEEEEEE
Q psy12060 415 DKVRLECVAFGYPVP--SYNWTRRGSPLPRNA---YF---E--NFNRILTIPNVKVEDQGEYICRASNDRSALESSVTIS 484 (978)
Q Consensus 415 ~~~~l~C~~~g~p~~--~v~W~~~~~~l~~~~---~~---~--~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~ 484 (978)
+.++|.|.+.|.|.| +|+|++++.++.... ++ . ...+.|.|.+++..|+|.|+|.|.|..|..++++.|.
T Consensus 1 ~~~~L~C~a~g~P~p~~~v~W~~~g~~i~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~YtC~A~n~~g~~~~~~~L~ 80 (85)
T cd05854 1 ENLTLQCHASHDPTMDLTFTWSLDDFPIDLDKPNGHYRRMEVKETIGDLVIVNAQLSHAGTYTCTAQTVVDSASASATLV 80 (85)
T ss_pred CcEEEEEEEecCCCCCeEEEEEECCeEccccCCCCcEEEEEecceEeEEEEccCChhhCeEEEEEEecCCCCEEEEEEEE
Confidence 468999999999987 689999999885432 21 1 1346899999999999999999999999999999999
Q ss_pred EEeec
Q psy12060 485 IQAEP 489 (978)
Q Consensus 485 V~~~p 489 (978)
|..+|
T Consensus 81 V~~~P 85 (85)
T cd05854 81 VRGPP 85 (85)
T ss_pred EECCC
Confidence 98776
No 78
>cd05864 Ig2_VEGFR-2 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2). Ig2_VEGF-2: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-2 (KDR/Flk-1) is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF-A also interacts with VEGFR-1, which it binds more strongly than VEGFR-2. VEGFR-2 and -1 may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.
Probab=99.38 E-value=2.4e-12 Score=99.59 Aligned_cols=68 Identities=28% Similarity=0.461 Sum_probs=57.9
Q ss_pred EEEEEEEeecCCCeeEEEEcCccCCCCceeeecccEEEeCCCCCCCCeEEEEEEEeCCCceEEEEEEEE
Q psy12060 417 VRLECVAFGYPVPSYNWTRRGSPLPRNAYFENFNRILTIPNVKVEDQGEYICRASNDRSALESSVTISI 485 (978)
Q Consensus 417 ~~l~C~~~g~p~~~v~W~~~~~~l~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V 485 (978)
+.|.|.+.|.|.|.++|+|+|.+|....... .+..|.|.++..+|+|.|+|.|.|..|..+...++++
T Consensus 1 ~~~~c~v~G~P~P~v~W~k~g~~l~~~~~~~-~~~~L~I~~v~~~D~G~YtC~a~N~~G~~~~~~t~~l 68 (70)
T cd05864 1 VKIPVKYYGYPPPEVKWYKNGQLIVLNHTFK-RGVHLTIYEVTEKDAGNYTVVLTNPITKEEQRHTFQL 68 (70)
T ss_pred CEEEeEEEEeCCCEEEEEECCEECCCCCEEc-cCCEEEECcCCHHHCEEEEEEEEECCCceeeEEEEEE
Confidence 4699999999999999999999997654432 3468999999999999999999999998777666555
No 79
>cd05893 Ig_Palladin_C C-terminal immunoglobulin (Ig)-like domain of palladin. Ig_Palladin_C: C-terminal immunoglobulin (Ig)-like domain of palladin. Palladin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to this family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Palladin binds to alpha-actinin ezrin, vasodilator-stimulated phosphoprotein VASP, SPIN90 (DIP, mDia interacting protein), and Src. Palladin also binds F-actin directly, via its Ig3 domain. Palladin is expressed as several alternatively spliced isoforms, having various combinations of Ig-like domains, in a cell-type-specific manner. It has been suggested that palladin's different Ig-like domains may be specialized for distinct functions.
Probab=99.38 E-value=2.1e-12 Score=101.93 Aligned_cols=70 Identities=29% Similarity=0.581 Sum_probs=60.3
Q ss_pred EEEEEeeccCCCCeeEEeeCCEEecCC-CcEEEeecC----cEEEccccCCCCEEEEEEEEeCCceeeeeEEEEE
Q psy12060 606 VTIFCNPEAAPKPKFVWKKDGNIIGSG-GRRKIFENG----NLLISPVSRDDSGIYSCTATNVHGMDESKGRLIV 675 (978)
Q Consensus 606 ~~l~C~~~~~p~~~i~W~~~g~~~~~~-~~~~~~~~~----~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v 675 (978)
++|.|.+.|.|.|.|+|+|++..+... .++.+...+ +|.|.++..+|+|.|+|.|.|..|...+++.|.|
T Consensus 1 v~l~C~v~G~P~P~v~W~k~~~~l~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~a~L~V 75 (75)
T cd05893 1 VRLECRVSGVPHPQIFWKKENESLTHNTDRVSMHQDNCGYICLLIQGATKEDAGWYTVSAKNEAGIVSCTARLDV 75 (75)
T ss_pred CEEEEEEeEecCCEEEEEECCEECCCCCCeEEEEEcCCCEEEEEECCCCHHHCEEEEEEEEcCCCEEEEEEEEeC
Confidence 579999999999999999999988753 455554443 5999999999999999999999999999888864
No 80
>cd05749 Ig2_Tyro3_like Second immunoglobulin (Ig)-like domain of Axl/Tyro3 receptor tyrosine kinases (RTKs). Ig2_Tyro3_like: the second immunoglobulin (Ig)-like domain in the Axl/Tyro3 family of receptor tyrosine kinases (RTKs). This family includes Axl (also known as Ark, Ufo, and Tyro7), Tyro3 (also known as Sky, Rse, Brt, Dtk, and Tif), and Mer (also known as Nyk, c-Eyk, and Tyro12). Axl/Tyro3 family receptors have an extracellular portion with two Ig-like domains followed by two fibronectin-types III (FNIII) domains, a membrane-spanning single helix, and a cytoplasmic tyrosine kinase domain. Axl, Tyro3 and Mer are widely expressed in adult tissues, though they show higher expression in the brain, in the lymphatic and vascular systems, and in the testis. Axl, Tyro3, and Mer bind the vitamin K dependent protein Gas6 with high affinity, and in doing so activate their tyrosine kinase activity. Axl/Gas6 signaling may play a part in cell adhesion processes, prevention of apoptosis, and c
Probab=99.38 E-value=2.2e-12 Score=103.06 Aligned_cols=79 Identities=22% Similarity=0.359 Sum_probs=59.9
Q ss_pred eEeCCCceEecCCCccccCcEEEEEEeecCCCC-eEEEEEcccccccccccccCCCCCCceEeecceEEEeCCCCCCCCe
Q psy12060 192 FIKQPTDVVFDLSKRSILNDITLSCYAGGYPNP-SYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVEDRG 270 (978)
Q Consensus 192 ~~~~p~~~~~~~~~~~~g~~~~l~C~~~g~p~~-~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~d~G 270 (978)
|+..|.+..+.. |+++.|+|.+.|.|.| +|.|+|||.++.. +.....+.|.|..+ .|+|
T Consensus 1 f~~~P~~~~v~~-----G~~v~l~C~a~G~P~P~~I~W~k~g~~l~~------------~~~~~~s~L~i~~~---~d~g 60 (81)
T cd05749 1 FTVEPEDLSVTA-----NTPFNLTCQAVGPPEPVEILWWQGGSPLGD------------PPAPSPSVLNVPGL---NETS 60 (81)
T ss_pred CcCCCCceEEcC-----CCCEEEEEEeeeecCCeEEEEEECCEECCC------------CCCCCCCEEEEccc---cCCe
Confidence 345577766543 5669999999999999 7999999976531 11223457888664 5889
Q ss_pred EEEEEEEeCceeEEeEEEEE
Q psy12060 271 SYHCKASNKFGSIISESVQL 290 (978)
Q Consensus 271 ~Y~C~a~n~~g~~~s~~~~l 290 (978)
.|.|.|+|..|...+..++|
T Consensus 61 ~Y~C~A~N~~G~~~s~~a~~ 80 (81)
T cd05749 61 KFSCEAHNAKGVTTSRTGTV 80 (81)
T ss_pred EEEEEEEeccCcEEeeeEEe
Confidence 99999999999988777765
No 81
>cd05735 Ig8_DSCAM Eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM). Ig8_DSCAM: the eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.
Probab=99.38 E-value=3.8e-12 Score=104.66 Aligned_cols=78 Identities=29% Similarity=0.472 Sum_probs=66.9
Q ss_pred CCeEEEEEeeccCCCCeeEEeeCCEEecCC-CcEEEee--c-----CcEEEccccCCCCEEEEEEEEeCCceeeeeEEEE
Q psy12060 603 GGNVTIFCNPEAAPKPKFVWKKDGNIIGSG-GRRKIFE--N-----GNLLISPVSRDDSGIYSCTATNVHGMDESKGRLI 674 (978)
Q Consensus 603 g~~~~l~C~~~~~p~~~i~W~~~g~~~~~~-~~~~~~~--~-----~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~ 674 (978)
|+.++|.|.+.|.|++.+.|++++..+... .++.+.. . .+|.|.++..+|+|.|+|.|.|..|.....+.|.
T Consensus 1 g~~~~l~C~~~g~p~~~i~W~k~~~~i~~~~~r~~~~~~~~~~~~~s~L~I~~~~~~D~G~YtC~A~N~~G~~~~~~~L~ 80 (88)
T cd05735 1 GQKKEMSCTAHGEKPIIVRWEKEDRIINPEMSRYLVSTKEVGDEVISTLQILPTVREDSGFFSCHAINSYGEDRGIIQLT 80 (88)
T ss_pred CCeEEEEEEEECCCCCEEEEeeCCEECCCCCCcEEEEEecCCCcEEEEEEECCCCcccCEEEEEEEEcCCCcceEEEEEE
Confidence 789999999999999999999999888654 3444432 1 3599999999999999999999999999999999
Q ss_pred EEeCCc
Q psy12060 675 VLHGPS 680 (978)
Q Consensus 675 v~~~p~ 680 (978)
|..+|.
T Consensus 81 V~~~P~ 86 (88)
T cd05735 81 VQEPPD 86 (88)
T ss_pred EeCCCC
Confidence 988764
No 82
>cd05728 Ig4_Contactin-2-like Fourth Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins. Ig4_Contactin-2-like: fourth Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.
Probab=99.37 E-value=4e-12 Score=104.12 Aligned_cols=83 Identities=36% Similarity=0.639 Sum_probs=71.9
Q ss_pred eccCCcccccCCCceeEEEEeecCCCCeeEEeECCEECCCCCCCCCCCCcEEEecCEEEEEeCCCCCCCeEEEEEEEcCC
Q psy12060 492 TIPLTDKHMDNQADLTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQDNVLTIRYLNPERDPAMYQCRAKNQL 571 (978)
Q Consensus 492 ~~~~~~~~~~~g~~~~l~C~~~~~p~~~i~W~~~g~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~d~G~Y~C~a~n~~ 571 (978)
...|.+..+..|+++.|.|.+.|.|.|.+.|+|+|..+. ...++....+.|.|.++.. +|+|.|+|.|.|..
T Consensus 3 ~~~p~~~~~~~G~~~~l~C~~~g~p~p~v~W~k~g~~~~-------~~~~~~~~~~~L~i~~~~~-~D~G~Y~C~a~N~~ 74 (85)
T cd05728 3 LKVISDTEADIGSSLRWECKASGNPRPAYRWLKNGQPLA-------SENRIEVEAGDLRITKLSL-SDSGMYQCVAENKH 74 (85)
T ss_pred cccCCccEEcCCCcEEEEEEeeEeCCCEEEEEECCEECC-------CCCeEEEeCCEEEEeeCCH-HHCEEEEEEEECCC
Confidence 445677889999999999999999999999999999886 3345667788999999996 99999999999999
Q ss_pred CceeeEEEEEE
Q psy12060 572 KTRYSSAQLRV 582 (978)
Q Consensus 572 g~~~~~~~l~v 582 (978)
|....++.|.|
T Consensus 75 G~~~~~~~l~V 85 (85)
T cd05728 75 GTIYASAELAV 85 (85)
T ss_pred CeEEEEEEEEC
Confidence 99888777654
No 83
>cd04969 Ig5_Contactin_like Fifth Ig domain of contactin. Ig5_Contactin_like: Fifth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week
Probab=99.37 E-value=3.1e-12 Score=101.52 Aligned_cols=72 Identities=28% Similarity=0.433 Sum_probs=63.0
Q ss_pred CCcEEEEEEEeecCCCeeEEEEcCccCCCCceee-ecccEEEeCCCCCCCCeEEEEEEEeCCCceEEEEEEEE
Q psy12060 414 GDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYFE-NFNRILTIPNVKVEDQGEYICRASNDRSALESSVTISI 485 (978)
Q Consensus 414 G~~~~l~C~~~g~p~~~v~W~~~~~~l~~~~~~~-~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V 485 (978)
|+++.|.|.+.|.|.|+++|+|++..+....+.. ..++.|.|.+++.+|+|.|+|.|.|..|..+.++.|.|
T Consensus 1 G~~v~L~C~~~g~P~p~v~W~k~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V 73 (73)
T cd04969 1 GGDVIIECKPKAAPKPTISWSKGTELLTNSSRICIWPDGSLEILNVTKSDEGKYTCFAENFFGKANSTGSLSV 73 (73)
T ss_pred CCeEEEEEeeeEcCCCEEEEEECCEEcccCCCEEECCCCeEEEccCChhHCEEEEEEEECCCCceEEEEEEEC
Confidence 7889999999999999999999999886554433 33468999999999999999999999999999888865
No 84
>cd05722 Ig1_Neogenin First immunoglobulin (Ig)-like domain in neogenin and similar proteins. Ig1_Neogenin: first immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.
Probab=99.37 E-value=4.2e-12 Score=106.91 Aligned_cols=88 Identities=35% Similarity=0.644 Sum_probs=66.5
Q ss_pred eEeCCCceEecCCCccccCcEEEEEEeecCCCCeEEEEEcccccccccccccCCCCCC-ceEeecceEEEeCCC----CC
Q psy12060 192 FIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDK-RFTLSGGNLIINDPR----QV 266 (978)
Q Consensus 192 ~~~~p~~~~~~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~i~~~~----~~ 266 (978)
|+.+|.+..+.. |++++|.|.+.|.|.|+|.|+|||..+... ... .....+++|.|.++. +.
T Consensus 2 f~~~P~~~~~~~-----g~~v~l~C~v~g~P~p~i~W~k~g~~l~~~--------~~~~~~~~~~~~l~i~~v~~~~~~~ 68 (95)
T cd05722 2 FLSEPSDIVAVR-----GGPVVLNCSAEGEPPPKIEWKKDGVLLNLV--------SDERRQQLPNGSLLITSVVHSKHNK 68 (95)
T ss_pred cEECCCCeEEcC-----CCCEEEeeecccCCCCEEEEEECCeECccc--------cCcceEEccCCeEEEeeeeccCCCC
Confidence 566788777643 567999999999999999999999765321 111 223456677776642 47
Q ss_pred CCCeEEEEEEEeC-ceeEEeEEEEEEE
Q psy12060 267 EDRGSYHCKASNK-FGSIISESVQLAF 292 (978)
Q Consensus 267 ~d~G~Y~C~a~n~-~g~~~s~~~~l~v 292 (978)
+|.|.|+|.|.|. .|...|..+.|.|
T Consensus 69 ~D~G~Y~C~a~N~~~G~~~s~~~~l~v 95 (95)
T cd05722 69 PDEGFYQCVAQNDSLGSIVSRTARLTV 95 (95)
T ss_pred CcCEEEEEEEECCccCcEEEeeeEEeC
Confidence 8999999999999 9998888888764
No 85
>cd05737 Ig_Myomesin_like_C C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein. Ig_Myomesin_like_C: domain similar to the C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein. Myomesin and M-protein are both structural proteins localized to the M-band, a transverse structure in the center of the sarcomere, and are candidates for M-band bridges. Both proteins are modular, consisting mainly of repetitive Ig-like and fibronectin type III (FnIII) domains. Myomesin is expressed in all types of vertebrate striated muscle; M-protein has a muscle-type specific expression pattern. Myomesin is present in both slow and fast fibers; M-protein is present only in fast fibers. It has been suggested that myomesin acts as a molecular spring with alternative splicing as a means of modifying its elasticity.
Probab=99.37 E-value=5.2e-12 Score=105.42 Aligned_cols=80 Identities=23% Similarity=0.349 Sum_probs=68.5
Q ss_pred cceeecCCCeEEEEEeeccCCCCeeEEeeCCEEecCCCcEEEeec----CcEEEccccCCCCEEEEEEEEeCCceeeeeE
Q psy12060 596 SETYAGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFEN----GNLLISPVSRDDSGIYSCTATNVHGMDESKG 671 (978)
Q Consensus 596 ~~~~~~~g~~~~l~C~~~~~p~~~i~W~~~g~~~~~~~~~~~~~~----~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~ 671 (978)
..+.+.+|+++.|.|.+.|.|.|++.|+|+|..+....++.+... .+|.|.++..+|+|.|+|.|.|..|.....+
T Consensus 9 ~~v~v~~G~~v~L~C~v~G~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~ 88 (92)
T cd05737 9 DVVTIMEGKTLNLTCTVFGDPDPEVSWLKNDQALALSDHYNVKVEQGKYASLTIKGVSSEDSGKYGIVVKNKYGGETVDV 88 (92)
T ss_pred ceEEEeCCCcEEEEEEEEecCCCeEEEEECCEECccCCCEEEEEcCCCEEEEEEccCChhhCEEEEEEEEECCCcceEEE
Confidence 445688999999999999999999999999999987766655422 2599999999999999999999999988887
Q ss_pred EEEE
Q psy12060 672 RLIV 675 (978)
Q Consensus 672 ~l~v 675 (978)
.|.|
T Consensus 89 ~v~v 92 (92)
T cd05737 89 TVSV 92 (92)
T ss_pred EEeC
Confidence 7654
No 86
>cd05725 Ig3_Robo Third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Ig3_Robo: domain similar to the third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni
Probab=99.36 E-value=2.8e-12 Score=100.47 Aligned_cols=69 Identities=30% Similarity=0.561 Sum_probs=60.2
Q ss_pred EEEEEEEeecCCCeeEEEEcCccCCCCceeeecccEEEeCCCCCCCCeEEEEEEEeCCCceEEEEEEEE
Q psy12060 417 VRLECVAFGYPVPSYNWTRRGSPLPRNAYFENFNRILTIPNVKVEDQGEYICRASNDRSALESSVTISI 485 (978)
Q Consensus 417 ~~l~C~~~g~p~~~v~W~~~~~~l~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V 485 (978)
++|.|.+.|.|.|.+.|+|++..++........+..|.|.+++.+|+|.|+|.|.|..|....++.|.|
T Consensus 1 v~l~C~~~g~P~p~v~W~k~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V 69 (69)
T cd05725 1 VEFQCEVGGDPVPTVLWRKEDGELPKGRAEILDDKSLKIRNVTAGDEGSYTCEAENMVGKIEASASLTV 69 (69)
T ss_pred CEEEEECccCCCCEEEEEECCccCCCCcEEEeeCCEEEECcCChhHCEEEEEEEEcCCCcEEEEEEEEC
Confidence 479999999999999999998888665444445678999999999999999999999999988888765
No 87
>cd05876 Ig3_L1-CAM Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). Ig3_L1-CAM: third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.
Probab=99.36 E-value=3.6e-12 Score=100.17 Aligned_cols=69 Identities=36% Similarity=0.661 Sum_probs=59.8
Q ss_pred EEEEEEEeecCCCeeEEEEcCccCCCCce-eeecccEEEeCCCCCCCCeEEEEEEEeCCCceEEEEEEEE
Q psy12060 417 VRLECVAFGYPVPSYNWTRRGSPLPRNAY-FENFNRILTIPNVKVEDQGEYICRASNDRSALESSVTISI 485 (978)
Q Consensus 417 ~~l~C~~~g~p~~~v~W~~~~~~l~~~~~-~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V 485 (978)
+.|.|.+.|.|.|.|.|+|++..+..... ....+++|.|.+++.+|+|.|+|.|.|..|..+.++.|.|
T Consensus 1 ~~L~C~~~G~P~P~v~W~k~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V 70 (71)
T cd05876 1 LVLECIAEGLPTPEVHWDRIDGPLSPNRTKKLNNNKTLQLDNVLESDDGEYVCTAENSEGSARHHYTVTV 70 (71)
T ss_pred CEEEEEeeEecCCeEEEEECCcCCCCCceeEEcCCCEEEEcccCHHhCEEEEEEEEcCCCeEEEEEEEEE
Confidence 47999999999999999999988765432 3345679999999999999999999999999999888876
No 88
>cd05867 Ig4_L1-CAM_like Fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). Ig4_L1-CAM_like: fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.
Probab=99.36 E-value=5.8e-12 Score=100.76 Aligned_cols=73 Identities=27% Similarity=0.568 Sum_probs=63.5
Q ss_pred CCeEEEEEeeccCCCCeeEEeeCCEEecCCC--cEEEeecCcEEEccccCCCCEEEEEEEEeCCceeeeeEEEEE
Q psy12060 603 GGNVTIFCNPEAAPKPKFVWKKDGNIIGSGG--RRKIFENGNLLISPVSRDDSGIYSCTATNVHGMDESKGRLIV 675 (978)
Q Consensus 603 g~~~~l~C~~~~~p~~~i~W~~~g~~~~~~~--~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v 675 (978)
|+++.|.|.+.|.|.|+++|+++|..+.... .......+.|.|.+++.+|+|.|+|.|.|..|...+.+.|.|
T Consensus 1 G~~v~l~C~~~G~P~p~i~W~k~g~~i~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~V 75 (76)
T cd05867 1 GETARLDCQVEGIPTPNITWSINGAPIEGTDPDPRRHVSSGALILTDVQPSDTAVYQCEARNRHGNLLANAHVHV 75 (76)
T ss_pred CCeEEEEEEeeEeCCCeEEEEECCEECCCCCCCceEEeeCCEEEECCCChhhCEEEEEEEECCCCeEEEEEEEEE
Confidence 7899999999999999999999999886532 123345678999999999999999999999999999888876
No 89
>cd05894 Ig_C5_MyBP-C C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C). Ig_C5_MyBP_C : the C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C). MyBP_C consists of repeated domains, Ig and fibronectin type 3, and various linkers. Three isoforms of MYBP_C exist and are included in this group: cardiac(c), and fast and slow skeletal muscle (s) MyBP_C. cMYBP_C has insertions between and inside domains and an additional cardiac-specific Ig domain at the N-terminus. For cMYBP_C an interaction has been demonstrated between this C5 domain and the Ig C8 domain.
Probab=99.36 E-value=8e-12 Score=102.08 Aligned_cols=79 Identities=22% Similarity=0.378 Sum_probs=67.4
Q ss_pred ceeecCCCeEEEEEeeccCCCCeeEEeeCCEEecCC-CcEEEee---cCcEEEccccCCCCEEEEEEEEeCCceeeeeEE
Q psy12060 597 ETYAGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSG-GRRKIFE---NGNLLISPVSRDDSGIYSCTATNVHGMDESKGR 672 (978)
Q Consensus 597 ~~~~~~g~~~~l~C~~~~~p~~~i~W~~~g~~~~~~-~~~~~~~---~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~ 672 (978)
.+.+..|+++.|.|.+.|.|.|.+.|++++..+... .++.+.. .+.|.|.++..+|+|.|+|.|.|..|....++.
T Consensus 4 ~~~v~~G~~v~l~c~~~G~P~P~v~W~k~~~~i~~~~~r~~~~~~~~~~~L~I~~~~~~D~G~Y~c~a~N~~G~~~~~~~ 83 (86)
T cd05894 4 TIVVVAGNKLRLDVPISGEPAPTVTWSRGDKAFTETEGRVRVESYKDLSSFVIEGAEREDEGVYTITVTNPVGEDHASLF 83 (86)
T ss_pred EEEEEcCCEEEEEeeEeecCCCeEEEEECCEECccCCCeEEEEEcCCeEEEEECCCccCcCEEEEEEEEeCCCcEEEEEE
Confidence 455789999999999999999999999999998754 3555443 246999999999999999999999999988887
Q ss_pred EEE
Q psy12060 673 LIV 675 (978)
Q Consensus 673 l~v 675 (978)
|.|
T Consensus 84 l~V 86 (86)
T cd05894 84 VKV 86 (86)
T ss_pred EEC
Confidence 764
No 90
>cd05854 Ig6_Contactin-2 Sixth Ig domain of contactin-2. Ig6_Contactin-2: Sixth Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c
Probab=99.36 E-value=3.9e-12 Score=103.64 Aligned_cols=84 Identities=30% Similarity=0.566 Sum_probs=66.7
Q ss_pred ccEEEEEEeeecCCcCeEEEEeeCCEEccccccc-cccCCeeecCCceEEEeccCCCCCEEEEEEEEcCCCceeeeEEEE
Q psy12060 695 RNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLN-ELETPNINIDGGLLEITNASFADAGEYECVVKSTVGKISTKTTVI 773 (978)
Q Consensus 695 ~~~~l~C~~~~~p~~~~~~~W~~~g~~~~~~~~~-~~~~~~~~~~~~~l~i~~~~~~d~g~Y~c~a~n~~G~~s~~~~l~ 773 (978)
+.++|.|.+.+.|.|.+.|.|+++|.++...... ...........+.|.|.+++..|+|.|+|.|.|.+|..++++.|.
T Consensus 1 ~~~~L~C~a~g~P~p~~~v~W~~~g~~i~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~YtC~A~n~~g~~~~~~~L~ 80 (85)
T cd05854 1 ENLTLQCHASHDPTMDLTFTWSLDDFPIDLDKPNGHYRRMEVKETIGDLVIVNAQLSHAGTYTCTAQTVVDSASASATLV 80 (85)
T ss_pred CcEEEEEEEecCCCCCeEEEEEECCeEccccCCCCcEEEEEecceEeEEEEccCChhhCeEEEEEEecCCCCEEEEEEEE
Confidence 3689999999999998899999999887542210 000011112346899999999999999999999999999999999
Q ss_pred EcCCC
Q psy12060 774 VEGPP 778 (978)
Q Consensus 774 v~~~P 778 (978)
|.+||
T Consensus 81 V~~~P 85 (85)
T cd05854 81 VRGPP 85 (85)
T ss_pred EECCC
Confidence 99877
No 91
>cd05853 Ig6_Contactin-4 Sixth Ig domain of contactin-4. Ig6_Contactin-4: sixth Ig domain of the neural cell adhesion molecule contactin-4. Contactins are neural cell adhesion molecules, and are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. Highest expresson of contactin-4 is in testes, thyroid, small intestine, uterus and brain. Contactin-4 plays a role in the response of neuroblastoma cells to differentiating agents, such as retinoids. The contactin 4 gene is associated with cerebellar degeneration in spinocerebellar ataxia type 16.
Probab=99.35 E-value=4.6e-12 Score=101.38 Aligned_cols=80 Identities=30% Similarity=0.596 Sum_probs=66.7
Q ss_pred ccEEEEEEeeecCCcCeEEEEeeCCEEccccccccccCCeee-----cCCceEEEeccCCCCCEEEEEEEEcCCCceeee
Q psy12060 695 RNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNIN-----IDGGLLEITNASFADAGEYECVVKSTVGKISTK 769 (978)
Q Consensus 695 ~~~~l~C~~~~~p~~~~~~~W~~~g~~~~~~~~~~~~~~~~~-----~~~~~l~i~~~~~~d~g~Y~c~a~n~~G~~s~~ 769 (978)
+++.|.|.+.+++.+.+.|.|+++|.++.... . ..++. ...+.|.|.+++..|+|.|+|.|+|.+++.+++
T Consensus 1 ~~~~l~C~v~~d~~l~~~~~W~~dg~~i~~~~---~-~~~~~~~~~~~~~~~L~I~nv~~~dsG~YtC~a~n~~~~~~a~ 76 (85)
T cd05853 1 ESIVLPCQVSHDHSLDIVFTWSFNGHLIDFQK---D-GDHFERVGGQDSAGDLMIRSIQLKHAGKYVCMVQTSVDKLSAA 76 (85)
T ss_pred CcEEEEEEeccCCCCCcEEEEEECCEECcccC---C-CccEEEeccCCCCCcEEEecCCHHHCEEEEEEEEcccCceEEE
Confidence 36889999999888889999999999985311 0 11221 245689999999999999999999999999999
Q ss_pred EEEEEcCCC
Q psy12060 770 TTVIVEGPP 778 (978)
Q Consensus 770 ~~l~v~~~P 778 (978)
+.|+|.+||
T Consensus 77 a~L~V~~pP 85 (85)
T cd05853 77 ADLIVRGPP 85 (85)
T ss_pred EEEEEecCC
Confidence 999999987
No 92
>cd05730 Ig3_NCAM-1_like Third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). Ig3_NCAM-1_like: domain similar to the third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1,and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the
Probab=99.35 E-value=5.8e-12 Score=106.23 Aligned_cols=78 Identities=29% Similarity=0.583 Sum_probs=67.6
Q ss_pred CCCCCCcEEEEEEEeecCCCeeEEEEcCccCCCC-cee--eecccEEEeCCCCCCCCeEEEEEEEeCCCceEEEEEEEEE
Q psy12060 410 APKAGDKVRLECVAFGYPVPSYNWTRRGSPLPRN-AYF--ENFNRILTIPNVKVEDQGEYICRASNDRSALESSVTISIQ 486 (978)
Q Consensus 410 ~v~~G~~~~l~C~~~g~p~~~v~W~~~~~~l~~~-~~~--~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~ 486 (978)
.+..|+++.|.|.+.|.|.|.|.|+|+|..+... .+. ......|.|.+++.+|+|.|+|.|.|..|....++.|.|.
T Consensus 14 ~~~~G~~v~L~C~~~g~P~p~v~W~k~g~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~L~V~ 93 (95)
T cd05730 14 TANLGQSVTLACDADGFPEPTMTWTKDGEPIESGEEKYSFNEDGSEMTILDVDKLDEAEYTCIAENKAGEQEAEIHLKVF 93 (95)
T ss_pred EEeCCCCEEEEEeccEeCCCEEEEEECCEECcCCCCEEEEeCCCCEEEECCCChhhCEEEEEEEEcCCCeEEEEEEEEEE
Confidence 5678999999999999999999999999988654 222 2334679999999999999999999999999999999886
Q ss_pred e
Q psy12060 487 A 487 (978)
Q Consensus 487 ~ 487 (978)
.
T Consensus 94 ~ 94 (95)
T cd05730 94 A 94 (95)
T ss_pred e
Confidence 4
No 93
>cd05868 Ig4_NrCAM Fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule). Ig4_ NrCAM: fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six IG-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. NrCAM is primarily expressed in the nervous system.
Probab=99.35 E-value=5.6e-12 Score=100.45 Aligned_cols=73 Identities=25% Similarity=0.490 Sum_probs=62.8
Q ss_pred CCeEEEEEeeccCCCCeeEEeeCCEEecCC--CcEEEeecCcEEEccccCCCCEEEEEEEEeCCceeeeeEEEEE
Q psy12060 603 GGNVTIFCNPEAAPKPKFVWKKDGNIIGSG--GRRKIFENGNLLISPVSRDDSGIYSCTATNVHGMDESKGRLIV 675 (978)
Q Consensus 603 g~~~~l~C~~~~~p~~~i~W~~~g~~~~~~--~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v 675 (978)
|++++|.|.+.|.|.|+|+|+|+|..+... ........+.|.|.+++.+|+|.|+|.|.|..|...+++.|.|
T Consensus 1 g~~~~l~C~a~G~P~P~i~W~k~g~~i~~~~~~~~~~~~~~~l~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~v 75 (76)
T cd05868 1 GEDGTLICRANGNPKPSISWLTNGVPIEIAPTDPSRKVDGDTIIFSKVQERSSAVYQCNASNEYGYLLANAFVNV 75 (76)
T ss_pred CCCEEEEEEeeEeCCCeEEEEECCEEccccCCCceEEecCCEEEECCCCHhhCEEEEEEEEcCCCEEEEEEEEEe
Confidence 688999999999999999999999988643 2222334557999999999999999999999999999998887
No 94
>PF00059 Lectin_C: Lectin C-type domain; InterPro: IPR001304 Lectins occur in plants, animals, bacteria and viruses. Initially described for their carbohydrate-binding activity [], they are now recognised as a more diverse group of proteins, some of which are involved in protein-protein, protein-lipid or protein-nucleic acid interactions []. There are at least twelve structural families of lectins: C-type lectins, which are Ca+-dependent. S-type (galectins), a widespread family of glycan-binding proteins []. I-type, which have an immunoglobulin-like fold and can recognise sialic acids, other sugars and glycosaminoglycans []. P-type, which bind phosphomannosyl receptors []. Pentraxins []. (Trout) egg lectins. Calreticulin and calnexin, which act as molecular chaperones of the endoplasmic reticulum []. ERGIC-53 and VIP-36 []. Discoidins []. Eel aggutinins (fucolectins) []. Annexin lectins []. Fibrinogen-type lectins, which includes ficolins, tachylectins 5A and 5B, and Limax flavus (Spotted garden slug) agglutinin (these proteins have clear distinctions from one another, but they share a homologous fibrinogen-like domain used for carbohydrate binding). Also unclassified orphan lectins, including amphoterin, Cel-II, complement factor H, thrombospondin, sailic acid-binding lectins, adherence lectin, and cytokins (such as tumour necrosis factor and several interleukins). C-type lectins can be further divided into seven subgroups based on additional non-lectin domains and gene structure: (I) hyalectans, (II) asialoglycoprotein receptors, (III) collectins, (IV) selectins, (V) NK group transmembrane receptors, (VI) macrophage mannose receptors, and (VII) simple (single domain) lectins []. Therefore, lectins are a diverse group of proteins, both in terms of structure and activity. Carbohydrate binding ability may have evolved independently and sporadically in numerous unrelated families, where each evolved a structure that was conserved to fulfil some other activity and function. In general, animal lectins act as recognition molecules within the immune system, their functions involving defence against pathogens, cell trafficking, immune regulation and the prevention of autoimmunity [].; GO: 0005488 binding; PDB: 1T8D_A 2H2T_B 1T8C_A 2H2R_A 1TN3_A 1RJH_A 1HTN_A 3G8K_B 2E3X_B 1UMR_D ....
Probab=99.35 E-value=4.8e-12 Score=110.07 Aligned_cols=102 Identities=23% Similarity=0.295 Sum_probs=82.4
Q ss_pred CCCHHHHHHHhhhcCCeeeeeCChhhHHHHHHHhhccCCCCceEEEEeecCCCccEEEcCCCCCCcc--cccCCCCCCCc
Q psy12060 48 LKTRNDAKLNCKSLDSDLANVNDADEHGFIMYQLFWQDPQRRKWYFGGTQQSPNLWVNEDGTNLNEL--DAAFLPEPADN 125 (978)
Q Consensus 48 ~~~~~~A~~~C~~~~~~L~~i~~~~e~~~i~~~~~~~~~~~~~w~g~~~~~~~~~w~w~dg~~~~~~--~~~~~~~~~~~ 125 (978)
+++|.+|+++|+.+||+|+.|.+.+|++||..++. ....+|+|+ +....+.|.|.||...... +..| .+..
T Consensus 2 ~~~~~~A~~~C~~~~~~L~~i~~~~e~~~i~~~~~---~~~~~Wig~-~~~~~~~~~w~~~~~~~~~~~~~~w---~~~~ 74 (105)
T PF00059_consen 2 PMTWEEAQQYCQSMGAHLASINSEEENDFIQSQLK---SNESYWIGL-DSDNNGTWKWIDGSPNSPENFYTNW---NPPN 74 (105)
T ss_dssp EEEHHHHHHHHHHTTSEEB-GSSHHHHHHHHHHHH---SSSEEEEEE-ESSSTSEEEETTSSBSSSTTBSGCB---SSGG
T ss_pred CCCHHHHHHHHhcCCCEEeEeCCHHHhhhhhhccc---ccceeeeee-eccccceeccccCCCcccccccccc---ccCC
Confidence 37999999999999999999999999999999986 456899999 7777889999999987643 2345 4444
Q ss_pred ccCceEEEEecccccceeeeecCCCcceeeEEEe
Q psy12060 126 VQRDYLAYSFSQSLKRWGFERVTGMEPLLFICEA 159 (978)
Q Consensus 126 ~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~C~~ 159 (978)
..++|+.+ .......|.+..|.....|+|+.
T Consensus 75 ~~~~C~~~---~~~~~~~w~~~~C~~~~~fiCek 105 (105)
T PF00059_consen 75 DSENCAYI---YYSSSGKWNDVPCSEKYPFICEK 105 (105)
T ss_dssp SSEEEEEE---GCSTTTEEEEEETTSEEEEEEEE
T ss_pred CCCCeEEE---EEcCCCeEEeeCCCCCeeEEeeC
Confidence 57899988 22224478999999999999984
No 95
>cd05738 Ig2_RPTP_IIa_LAR_like Second immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. Ig2_RPTP_IIa_LAR_like: domain similar to the second immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple Ig-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains.
Probab=99.35 E-value=4.2e-12 Score=100.75 Aligned_cols=72 Identities=33% Similarity=0.599 Sum_probs=57.8
Q ss_pred EEEEEEeecCCCCeEEEEEcccccccccccccCCCCCCceEe-ecceEEEeCCCCCCCCeEEEEEEEeCceeEEeEEEEE
Q psy12060 212 ITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTL-SGGNLIINDPRQVEDRGSYHCKASNKFGSIISESVQL 290 (978)
Q Consensus 212 ~~l~C~~~g~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~i~~~~~~~d~G~Y~C~a~n~~g~~~s~~~~l 290 (978)
++|.|.+.|.|.|+|.|||++.++.. ..+.++.. .++.|.|.++ +.+|+|.|+|.|.|..|...+..+.|
T Consensus 1 a~l~C~~~G~P~p~v~W~k~~~~~~~--------~~~~~~~~~~~g~L~i~~~-~~~D~G~Y~C~a~N~~G~~~s~~a~l 71 (74)
T cd05738 1 ATMLCAASGNPDPEITWFKDFLPVDT--------TSNGRIKQLRSGALQIENS-EESDQGKYECVATNSAGTRYSAPANL 71 (74)
T ss_pred CEEEEEEeEecCCEEEEEECCEECcc--------CCCCCEEEcCCcEEEECCC-ChhhCEEEEEEEECCCCceEcccEEE
Confidence 47999999999999999999865421 12233333 4668999887 89999999999999999988888887
Q ss_pred EE
Q psy12060 291 AF 292 (978)
Q Consensus 291 ~v 292 (978)
.|
T Consensus 72 ~v 73 (74)
T cd05738 72 YV 73 (74)
T ss_pred EE
Confidence 76
No 96
>cd05857 Ig2_FGFR Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. Ig2_FGFR: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three IG-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin sulfate proteoglycans.
Probab=99.35 E-value=5.1e-12 Score=104.24 Aligned_cols=76 Identities=24% Similarity=0.538 Sum_probs=65.2
Q ss_pred CCCCCCcEEEEEEEeecCCCeeEEEEcCccCCCCcee-----eecccEEEeCCCCCCCCeEEEEEEEeCCCceEEEEEEE
Q psy12060 410 APKAGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYF-----ENFNRILTIPNVKVEDQGEYICRASNDRSALESSVTIS 484 (978)
Q Consensus 410 ~v~~G~~~~l~C~~~g~p~~~v~W~~~~~~l~~~~~~-----~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~ 484 (978)
.+.+|+.++|.|.+.|.|.|.++|+|++..+...... .....+|.|.++..+|+|.|+|.|.|..|....++.|.
T Consensus 5 ~v~~G~~~~L~C~~~g~P~p~i~W~k~g~~l~~~~~~~~~~~~~~~~~l~i~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~ 84 (85)
T cd05857 5 AVPAANTVKFRCPAAGNPTPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINHTYHLD 84 (85)
T ss_pred EcCCCCEEEEEEEcCCCCCCEEEEEECCEECCCCCceeeeEEeCCceEEEEccCCcccCEEEEEEEEeCCCEEEEEEEEE
Confidence 3568999999999999999999999999998654332 22345799999999999999999999999999988886
Q ss_pred E
Q psy12060 485 I 485 (978)
Q Consensus 485 V 485 (978)
|
T Consensus 85 v 85 (85)
T cd05857 85 V 85 (85)
T ss_pred C
Confidence 5
No 97
>cd05746 Ig4_Peroxidasin Fourth immunoglobulin (Ig)-like domain of peroxidasin. Ig4_Peroxidasin: the fourth immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted, and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells, which have undergone programmed cell death, and protection of the organism against non-self.
Probab=99.35 E-value=3.2e-12 Score=99.93 Aligned_cols=68 Identities=34% Similarity=0.593 Sum_probs=62.1
Q ss_pred EEEEEeeccCCCCeeEEeeCCEEecCCCcEEEeecCcEEEccccCCCCEEEEEEEEeCCceeeeeEEE
Q psy12060 606 VTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTATNVHGMDESKGRL 673 (978)
Q Consensus 606 ~~l~C~~~~~p~~~i~W~~~g~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l 673 (978)
+.|.|.+.|.|.|.++|+|+|..+....++.+..++.|.|.++..+|+|.|+|.|.|..|....++.|
T Consensus 1 v~L~C~~~g~P~p~i~W~k~g~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~L 68 (69)
T cd05746 1 VQIPCSAQGDPEPTITWNKDGVQVTESGKFHISPEGYLAIRDVGVADQGRYECVARNTIGYASVSMVL 68 (69)
T ss_pred CEeEecceEeCCCEEEEEECCEECCCCCCEEECCCCEEEECcCChhhCEEEEEEEECCCCcEEEEEEe
Confidence 47999999999999999999999887777777778899999999999999999999999998887765
No 98
>cd05853 Ig6_Contactin-4 Sixth Ig domain of contactin-4. Ig6_Contactin-4: sixth Ig domain of the neural cell adhesion molecule contactin-4. Contactins are neural cell adhesion molecules, and are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. Highest expresson of contactin-4 is in testes, thyroid, small intestine, uterus and brain. Contactin-4 plays a role in the response of neuroblastoma cells to differentiating agents, such as retinoids. The contactin 4 gene is associated with cerebellar degeneration in spinocerebellar ataxia type 16.
Probab=99.35 E-value=5.4e-12 Score=101.02 Aligned_cols=76 Identities=21% Similarity=0.394 Sum_probs=64.0
Q ss_pred CeEEEEEeeccCC--CCeeEEeeCCEEecC---CCcEEE----eecCcEEEccccCCCCEEEEEEEEeCCceeeeeEEEE
Q psy12060 604 GNVTIFCNPEAAP--KPKFVWKKDGNIIGS---GGRRKI----FENGNLLISPVSRDDSGIYSCTATNVHGMDESKGRLI 674 (978)
Q Consensus 604 ~~~~l~C~~~~~p--~~~i~W~~~g~~~~~---~~~~~~----~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~ 674 (978)
+++.|.|.+.+.| ++.|.|++||+.|.. +.++.+ ...+.|.|.+++..|+|.|+|.|.|..+...+++.|.
T Consensus 1 ~~~~l~C~v~~d~~l~~~~~W~~dg~~i~~~~~~~~~~~~~~~~~~~~L~I~nv~~~dsG~YtC~a~n~~~~~~a~a~L~ 80 (85)
T cd05853 1 ESIVLPCQVSHDHSLDIVFTWSFNGHLIDFQKDGDHFERVGGQDSAGDLMIRSIQLKHAGKYVCMVQTSVDKLSAAADLI 80 (85)
T ss_pred CcEEEEEEeccCCCCCcEEEEEECCEECcccCCCccEEEeccCCCCCcEEEecCCHHHCEEEEEEEEcccCceEEEEEEE
Confidence 4689999998754 779999999999962 234444 2456799999999999999999999999999999999
Q ss_pred EEeCC
Q psy12060 675 VLHGP 679 (978)
Q Consensus 675 v~~~p 679 (978)
|..||
T Consensus 81 V~~pP 85 (85)
T cd05853 81 VRGPP 85 (85)
T ss_pred EecCC
Confidence 98776
No 99
>cd04973 Ig1_FGFR First immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Ig1_FGFR: The first immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for all FGFs.
Probab=99.34 E-value=5.3e-12 Score=101.61 Aligned_cols=75 Identities=24% Similarity=0.395 Sum_probs=64.3
Q ss_pred CCCCCCcEEEEEEEeecCCCeeEEEEcCccCCCCceeeecccEEEeCCCCCCCCeEEEEEEEeCCCceEEEEEEEE
Q psy12060 410 APKAGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYFENFNRILTIPNVKVEDQGEYICRASNDRSALESSVTISI 485 (978)
Q Consensus 410 ~v~~G~~~~l~C~~~g~p~~~v~W~~~~~~l~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V 485 (978)
.+.+|+.++|.|.+.+. .+.|.|+|+|.+|....++...+..|.|.+++.+|+|.|+|.|.|..|.....+.|.|
T Consensus 5 ~~~~G~~v~l~C~~~~~-~~~v~W~k~g~~l~~~~~~~~~~~~L~I~~~~~~DsG~Y~C~a~n~~g~~~~~~~v~V 79 (79)
T cd04973 5 SAHPGDLLQLRCRLRDD-VQSINWTKDGVQLGENNRTRITGEEVQIKDAVPRDSGLYACVTSSPSGSDTTYFSVNV 79 (79)
T ss_pred EecCCCCEEEEEEecCC-CceEEEeeCCcCCCCCceEEEeCCEEEECCCChhhCEEEEEEEeCCCCcccEEEEEeC
Confidence 45799999999999986 5689999999999876655555678999999999999999999999988777776654
No 100
>cd05744 Ig_Myotilin_C_like Immunoglobulin (Ig)-like domain of myotilin, palladin, and myopalladin. Ig_Myotilin_like_C: immunoglobulin (Ig)-like domain in myotilin, palladin, and myopalladin. Myotilin, palladin, and myopalladin function as scaffolds that regulate actin organization. Myotilin and myopalladin are most abundant in skeletal and cardiac muscle; palladin is ubiquitously expressed in the organs of developing vertebrates and plays a key role in cellular morphogenesis. The three family members each interact with specific molecular partners: all three bind to alpha-actinin; in addition, palladin also binds to vasodilator-stimulated phosphoprotein (VASP) and ezrin, myotilin binds to filamin and actin, and myopalladin also binds to nebulin and cardiac ankyrin repeat protein (CARP).
Probab=99.34 E-value=6.3e-12 Score=99.75 Aligned_cols=69 Identities=28% Similarity=0.439 Sum_probs=57.9
Q ss_pred EEEEEEEeecCCCeeEEEEcCccCCCC-ceee---e--cccEEEeCCCCCCCCeEEEEEEEeCCCceEEEEEEEE
Q psy12060 417 VRLECVAFGYPVPSYNWTRRGSPLPRN-AYFE---N--FNRILTIPNVKVEDQGEYICRASNDRSALESSVTISI 485 (978)
Q Consensus 417 ~~l~C~~~g~p~~~v~W~~~~~~l~~~-~~~~---~--~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V 485 (978)
++|.|.+.|.|.|+|.|+|++..+... .++. . ...+|.|.+++.+|+|.|+|.|.|..|..+.++.|.|
T Consensus 1 v~L~C~v~G~P~P~v~W~k~~~~i~~~~~r~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~v 75 (75)
T cd05744 1 VRLECRVSAIPPPQIFWKKNNEMLTYNTDRISLYQDNCGRICLLIQNANKEDAGWYTVSAVNEAGVVSCNARLDV 75 (75)
T ss_pred CEEEEEEeecCCCeEEEEECCEECCCCCCcEEEEEcCCCeEEEEECCCCcccCEEEEEEEEcCCCcEEEEEEEeC
Confidence 479999999999999999999998643 2221 1 1236999999999999999999999999999888865
No 101
>cd04972 Ig_TrkABC_d4 Fourth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC. TrkABC_d4: the fourth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor fo
Probab=99.33 E-value=7.7e-12 Score=103.96 Aligned_cols=76 Identities=22% Similarity=0.326 Sum_probs=65.0
Q ss_pred CCCCCCcEEEEEEEeecCCCeeEEEEcCccCCCCcee----eecccEEEeCCCCCCCCeEEEEEEEeCCCceEEEEEEEE
Q psy12060 410 APKAGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYF----ENFNRILTIPNVKVEDQGEYICRASNDRSALESSVTISI 485 (978)
Q Consensus 410 ~v~~G~~~~l~C~~~g~p~~~v~W~~~~~~l~~~~~~----~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V 485 (978)
.+.+|+.++|.|.+.|.|.|.+.|++++..+...... ......|.|.++..+|.|.|+|.|.|..|....++.|.|
T Consensus 11 ~v~~G~~v~l~C~~~G~P~p~v~W~~~g~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~g~Y~C~A~N~~G~~~~~~~L~v 90 (90)
T cd04972 11 VVYEGGTATIRCTAEGSPLPKVEWIIAGLIVIQTRTDTLETTVDIYNLQLSNITSETQTTVTCTAENPVGQANVSVQVTV 90 (90)
T ss_pred EEcCCCcEEEEEEEEEcCCCeEEEEECCEEccCCccEEEEecCCEEEEEEecCCcccCEEEEEEEECCCCceeEEEEEeC
Confidence 3679999999999999999999999999988654321 123458999999999999999999999999999888764
No 102
>cd05747 Ig5_Titin_like M5, fifth immunoglobulin (Ig)-like domain of human titin C terminus and similar proteins. Ig5_Titin_like: domain similar to the M5, fifth immunoglobulin (Ig)-like domain from the human titin C terminus. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic; depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone, and appears to function similar to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching.
Probab=99.33 E-value=1.3e-11 Score=103.08 Aligned_cols=86 Identities=27% Similarity=0.495 Sum_probs=72.5
Q ss_pred CCccccCCCCcceeecCCCeEEEEEeeccCCCCeeEEeeCCEEecCCCcEEEeec---CcEEEccccCCCCEEEEEEEEe
Q psy12060 586 KPSFKKRPLESETYAGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFEN---GNLLISPVSRDDSGIYSCTATN 662 (978)
Q Consensus 586 ~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~i~W~~~g~~~~~~~~~~~~~~---~~l~i~~~~~~d~G~Y~C~a~n 662 (978)
+|.+...+ ....+.+|+.+.|.|.+.|.|.|.+.|+++|..+..+.++.+... ++|.|.++..+|+|.|+|.|.|
T Consensus 3 ~~~~~~~p--~~~~~~~G~~~~L~C~~~g~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~N 80 (92)
T cd05747 3 PATILTKP--RSLTVSEGESARFSCDVDGEPAPTVTWMREGQIIVSSQRHQITSTEYKSTFEISKVQMSDEGNYTVVVEN 80 (92)
T ss_pred CCcccccC--ccEEEeCCCcEEEEEEEeecCCCEEEEEECCEECCCCCcEEEEEcCCeeEEEECCCCcccCEeEEEEEEc
Confidence 56666544 456689999999999999999999999999998877766666543 4699999999999999999999
Q ss_pred CCceeeeeEEE
Q psy12060 663 VHGMDESKGRL 673 (978)
Q Consensus 663 ~~g~~~~~~~l 673 (978)
..|....++.|
T Consensus 81 ~~G~~~~~~~l 91 (92)
T cd05747 81 SEGKQEAQFTL 91 (92)
T ss_pred CCCCEeEEEEe
Confidence 99998877665
No 103
>cd05865 Ig1_NCAM-1 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. Ig1_NCAM-1: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (trans
Probab=99.33 E-value=8.4e-12 Score=103.79 Aligned_cols=76 Identities=25% Similarity=0.458 Sum_probs=61.9
Q ss_pred CCCCCCcEEEEEEEeecCC-CeeEEEE-cCccCCC-Cceee--e---cccEEEeCCCCCCCCeEEEEEEEeCC-CceEEE
Q psy12060 410 APKAGDKVRLECVAFGYPV-PSYNWTR-RGSPLPR-NAYFE--N---FNRILTIPNVKVEDQGEYICRASNDR-SALESS 480 (978)
Q Consensus 410 ~v~~G~~~~l~C~~~g~p~-~~v~W~~-~~~~l~~-~~~~~--~---~~~~L~i~~~~~~d~G~Y~C~a~n~~-g~~~~~ 480 (978)
.+.+|++++|.|.+.|.|. |.|+|++ ++..+.. ..++. . ..++|.|.+++.+|+|.|+|.|+|.. |..+++
T Consensus 11 ~v~~G~~v~l~C~v~G~P~~p~i~W~~~~g~~l~~~~~r~~v~~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~~g~~~~s 90 (96)
T cd05865 11 EISVGESKFFLCQVAGEAKDKDISWFSPNGEKLTPNQQRISVVRNDDYSSTLTIYNANIDDAGIYKCVVSNEDEGESEAT 90 (96)
T ss_pred EECCCCeEEEEEEEeCCCCCCEEEEECCCCcCccccCCeEEEEeCCCCceEEEEeccChhhCEEEEEEEEcCCCCcEEEE
Confidence 4568999999999999995 6999998 7766654 32321 1 13689999999999999999999996 888888
Q ss_pred EEEEE
Q psy12060 481 VTISI 485 (978)
Q Consensus 481 ~~l~V 485 (978)
+.|.|
T Consensus 91 ~~l~v 95 (96)
T cd05865 91 VNVKI 95 (96)
T ss_pred EEEEE
Confidence 88876
No 104
>cd05855 Ig_TrkB_d5 Fifth domain (immunoglobulin-like) of Trk receptor TrkB. TrkB_d5: the fifth domain of Trk receptor TrkB, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors, which mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. The Trks are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkB shares significant sequence homology and domain organization with TrkA, and TrkC. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. In some cell systems NT-3 can activate TrkA and TrkB receptors. TrKB transcripts are found throughout multiple structures of the central and peripheral nervous systems.
Probab=99.33 E-value=6.9e-12 Score=98.76 Aligned_cols=66 Identities=23% Similarity=0.398 Sum_probs=56.4
Q ss_pred EEEEEeecCCCeeEEEEcCccCCCCceee---------ecccEEEeCCCCCCCCeEEEEEEEeCCCceEEEEEEE
Q psy12060 419 LECVAFGYPVPSYNWTRRGSPLPRNAYFE---------NFNRILTIPNVKVEDQGEYICRASNDRSALESSVTIS 484 (978)
Q Consensus 419 l~C~~~g~p~~~v~W~~~~~~l~~~~~~~---------~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~ 484 (978)
|.|.+.|+|.|+|+|+|+|.+|..+.+.. ...+.|.|.++..+|+|.|+|.|+|..|..++++.+.
T Consensus 3 i~~~v~G~P~Pti~W~kng~~l~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~YtC~A~N~~G~~~~~~~~~ 77 (79)
T cd05855 3 IPFTVKGNPKPTLQWFHEGAILNESEYICTKIHVINNTEYHGCLQLDNPTHLNNGIYTLVAKNEYGEDEKNVSAH 77 (79)
T ss_pred EEEEEeEeCCCceEEEECCEECCCCcceeeeeEeecccceEEEEEECCCCcccCEEEEEEEEcCCcccceEEEee
Confidence 78999999999999999999997654321 1235799999999999999999999999988887764
No 105
>cd05863 Ig2_VEGFR-3 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3). Ig2_VEGFR-3: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-3 (Flt-4) binds two members of the VEGF family (VEGF-C and -D) and is involved in tumor angiogenesis and growth.
Probab=99.33 E-value=6.9e-12 Score=95.51 Aligned_cols=65 Identities=28% Similarity=0.404 Sum_probs=56.0
Q ss_pred EEEEEeeccCCCCeeEEeeCCEEecCCCcEEEeecCcEEEccccCCCCEEEEEEEEeCCceeeeeEEEEE
Q psy12060 606 VTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTATNVHGMDESKGRLIV 675 (978)
Q Consensus 606 ~~l~C~~~~~p~~~i~W~~~g~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v 675 (978)
++|.|.+.|.|.|.++|+|+|..+... ...+.|.|.++..+|+|.|+|.|.|..|....+..+.+
T Consensus 1 ~~l~c~v~g~P~P~v~W~kdg~~l~~~-----~~~~~L~i~~v~~~D~G~YtC~a~N~~g~~~~~~~~~l 65 (67)
T cd05863 1 VKLPVKVAAYPPPEFQWYKDGKLISGK-----HSQHSLQIKDVTEASAGTYTLVLWNSAAGLEKRISLEL 65 (67)
T ss_pred CEEEEEEEEeCCCEEEEEECCEECccc-----CCcCEEEECCCCHHHCEEEEEEEEECCccEEEEEEEEE
Confidence 479999999999999999999988632 13457999999999999999999999998777776665
No 106
>cd05746 Ig4_Peroxidasin Fourth immunoglobulin (Ig)-like domain of peroxidasin. Ig4_Peroxidasin: the fourth immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted, and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells, which have undergone programmed cell death, and protection of the organism against non-self.
Probab=99.33 E-value=5.5e-12 Score=98.55 Aligned_cols=67 Identities=31% Similarity=0.571 Sum_probs=58.2
Q ss_pred EEEEEEEeecCCCeeEEEEcCccCCCCceee-ecccEEEeCCCCCCCCeEEEEEEEeCCCceEEEEEE
Q psy12060 417 VRLECVAFGYPVPSYNWTRRGSPLPRNAYFE-NFNRILTIPNVKVEDQGEYICRASNDRSALESSVTI 483 (978)
Q Consensus 417 ~~l~C~~~g~p~~~v~W~~~~~~l~~~~~~~-~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l 483 (978)
+.|.|.+.|.|.|.|+|+|++..+....++. ..++.|.|.++..+|+|.|+|.|.|..|..+.++.|
T Consensus 1 v~L~C~~~g~P~p~i~W~k~g~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~L 68 (69)
T cd05746 1 VQIPCSAQGDPEPTITWNKDGVQVTESGKFHISPEGYLAIRDVGVADQGRYECVARNTIGYASVSMVL 68 (69)
T ss_pred CEeEecceEeCCCEEEEEECCEECCCCCCEEECCCCEEEECcCChhhCEEEEEEEECCCCcEEEEEEe
Confidence 5799999999999999999999886554433 346789999999999999999999999999888776
No 107
>cd04970 Ig6_Contactin_like Sixth Ig domain of contactin. Ig6_Contactin_like: Sixth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week
Probab=99.33 E-value=7e-12 Score=102.98 Aligned_cols=75 Identities=24% Similarity=0.488 Sum_probs=63.3
Q ss_pred CcEEEEEEEeecCCC--eeEEEEcCccCCCCc---e-----eeecccEEEeCCCCCCCCeEEEEEEEeCCCceEEEEEEE
Q psy12060 415 DKVRLECVAFGYPVP--SYNWTRRGSPLPRNA---Y-----FENFNRILTIPNVKVEDQGEYICRASNDRSALESSVTIS 484 (978)
Q Consensus 415 ~~~~l~C~~~g~p~~--~v~W~~~~~~l~~~~---~-----~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~ 484 (978)
++++|.|.+.|.|.| ++.|+++|.++.... . .....+.|.|.+++.+|+|.|+|.|.|..|..+.++.|.
T Consensus 1 e~~~L~C~~~g~P~p~i~~~W~~~g~~i~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~~~~~l~ 80 (85)
T cd04970 1 ESITLQCHASHDPTLDLTFTWSFNGVPIDFDKDGGHYRRVGGKDSNGDLMIRNAQLKHAGKYTCTAQTVVDSLSASADLI 80 (85)
T ss_pred CcEEEEEEEecCCCCCeEEEEEECCeEeeccCCCccEEEEecccccceEEEccCCHHhCeeeEEEEecCCCcEEEEEEEE
Confidence 478999999999987 679999999885332 1 112457899999999999999999999999999999999
Q ss_pred EEeec
Q psy12060 485 IQAEP 489 (978)
Q Consensus 485 V~~~p 489 (978)
|..+|
T Consensus 81 V~~pP 85 (85)
T cd04970 81 VRGPP 85 (85)
T ss_pred EECCC
Confidence 99876
No 108
>cd05748 Ig_Titin_like Immunoglobulin (Ig)-like domain of titin and similar proteins. Ig_Titin_like: immunoglobulin (Ig)-like domain found in titin-like proteins. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic, depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone. It appears to function similarly to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching. Within the sarcomere, titin is also attached to or is associated with myosin binding protein C (MyBP-C). MyBP-C appears to contribute to the generation of passive tension by titin, and similar to titin has repeated Ig-like and FN-
Probab=99.32 E-value=1.1e-11 Score=98.73 Aligned_cols=70 Identities=26% Similarity=0.493 Sum_probs=60.3
Q ss_pred cEEEEEEEeecCCCeeEEEEcCccCCCCceee----ecccEEEeCCCCCCCCeEEEEEEEeCCCceEEEEEEEE
Q psy12060 416 KVRLECVAFGYPVPSYNWTRRGSPLPRNAYFE----NFNRILTIPNVKVEDQGEYICRASNDRSALESSVTISI 485 (978)
Q Consensus 416 ~~~l~C~~~g~p~~~v~W~~~~~~l~~~~~~~----~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V 485 (978)
.+.|.|.+.|.|.|.++|+|+|..+....+.. .....|.|.++..+|+|.|+|.|.|..|..+.++.|.|
T Consensus 1 ~~~l~c~~~G~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~V 74 (74)
T cd05748 1 SVRLEVPISGRPTPTVTWSKDGKPLKLSGRVQIETTASSTSLVIKNAERSDSGKYTLTLKNPAGEKSATINVKV 74 (74)
T ss_pred CEEEEeeEeeeCCCeEEEEECCEEcCCCCeEEEEECCCeEEEEECCCCcCcCEEEEEEEECCCccEEEEEEEEC
Confidence 37899999999999999999999986554332 23468999999999999999999999999999888865
No 109
>cd05859 Ig4_PDGFR-alpha Fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha. IG4_PDGFR-alpha: The fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha. PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFR alpha binds to all three PDGFs, whereas the PDGFR beta (not included in this group) binds only to PDGF-B. PDGF alpha is organized as an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFR alpha and PDGFR beta are essential for normal development.
Probab=99.32 E-value=1.3e-11 Score=103.82 Aligned_cols=80 Identities=20% Similarity=0.231 Sum_probs=67.9
Q ss_pred ceeecCCCeEEEEEeeccCCCCeeEEeeCCEEecCCCcEEEe---------ecCcEEEccccCCCCEEEEEEEEeCCcee
Q psy12060 597 ETYAGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIF---------ENGNLLISPVSRDDSGIYSCTATNVHGMD 667 (978)
Q Consensus 597 ~~~~~~g~~~~l~C~~~~~p~~~i~W~~~g~~~~~~~~~~~~---------~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~ 667 (978)
...+..|+.+.|.|.+.|+|+|.+.|+|+|.++..+.+.... ..++|.|.++..+|+|.|+|.|.|..|..
T Consensus 12 ~~~~~~~~~~~l~~~v~g~P~P~v~W~kdg~~l~~~~~~~~~~~~~~~~~~~~s~L~I~~v~~~D~G~Ytc~A~N~~g~~ 91 (101)
T cd05859 12 LEFANLHEVKEFVVEVEAYPPPQIRWLKDNRTLIENLTEITTSEHNVQETRYVSKLKLIRAKEEDSGLYTALAQNEDAVK 91 (101)
T ss_pred eEEEecCCcEEEEEEEEEeCCCceEEEECCEECcCCcceEEeccccccceeeccEEEEeeCCHHHCEEEEEEEEcCCceE
Confidence 344778999999999999999999999999998866543322 12469999999999999999999999999
Q ss_pred eeeEEEEEE
Q psy12060 668 ESKGRLIVL 676 (978)
Q Consensus 668 ~~~~~l~v~ 676 (978)
..++.|.|.
T Consensus 92 ~~t~~l~V~ 100 (101)
T cd05859 92 SYTFALQIQ 100 (101)
T ss_pred EEEEEEEEE
Confidence 988888874
No 110
>cd05865 Ig1_NCAM-1 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. Ig1_NCAM-1: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (trans
Probab=99.32 E-value=1.1e-11 Score=103.18 Aligned_cols=77 Identities=23% Similarity=0.439 Sum_probs=63.1
Q ss_pred eecCCCeEEEEEeeccCCC-CeeEEee-CCEEecC-CCcEEEeec----CcEEEccccCCCCEEEEEEEEeCC-ceeeee
Q psy12060 599 YAGEGGNVTIFCNPEAAPK-PKFVWKK-DGNIIGS-GGRRKIFEN----GNLLISPVSRDDSGIYSCTATNVH-GMDESK 670 (978)
Q Consensus 599 ~~~~g~~~~l~C~~~~~p~-~~i~W~~-~g~~~~~-~~~~~~~~~----~~l~i~~~~~~d~G~Y~C~a~n~~-g~~~~~ 670 (978)
.+..|++++|.|.+.|.|. |.++|++ ++..+.. +.++.+..+ ++|.|.+++.+|+|.|+|.|.|.. |....+
T Consensus 11 ~v~~G~~v~l~C~v~G~P~~p~i~W~~~~g~~l~~~~~r~~v~~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~~g~~~~s 90 (96)
T cd05865 11 EISVGESKFFLCQVAGEAKDKDISWFSPNGEKLTPNQQRISVVRNDDYSSTLTIYNANIDDAGIYKCVVSNEDEGESEAT 90 (96)
T ss_pred EECCCCeEEEEEEEeCCCCCCEEEEECCCCcCccccCCeEEEEeCCCCceEEEEeccChhhCEEEEEEEEcCCCCcEEEE
Confidence 4788999999999999995 6999998 7776655 334444332 469999999999999999999997 888888
Q ss_pred EEEEE
Q psy12060 671 GRLIV 675 (978)
Q Consensus 671 ~~l~v 675 (978)
+.|.|
T Consensus 91 ~~l~v 95 (96)
T cd05865 91 VNVKI 95 (96)
T ss_pred EEEEE
Confidence 87765
No 111
>cd05876 Ig3_L1-CAM Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). Ig3_L1-CAM: third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.
Probab=99.32 E-value=6.7e-12 Score=98.62 Aligned_cols=70 Identities=26% Similarity=0.476 Sum_probs=60.0
Q ss_pred EEEEEeeccCCCCeeEEeeCCEEecCCCcEEEeecCcEEEccccCCCCEEEEEEEEeCCceeeeeEEEEE
Q psy12060 606 VTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTATNVHGMDESKGRLIV 675 (978)
Q Consensus 606 ~~l~C~~~~~p~~~i~W~~~g~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v 675 (978)
+.|.|.+.|.|.|.+.|+|++..+...........++|.|.++..+|+|.|+|.|.|..|....++.|.|
T Consensus 1 ~~L~C~~~G~P~P~v~W~k~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V 70 (71)
T cd05876 1 LVLECIAEGLPTPEVHWDRIDGPLSPNRTKKLNNNKTLQLDNVLESDDGEYVCTAENSEGSARHHYTVTV 70 (71)
T ss_pred CEEEEEeeEecCCeEEEEECCcCCCCCceeEEcCCCEEEEcccCHHhCEEEEEEEEcCCCeEEEEEEEEE
Confidence 4699999999999999999998776544333445678999999999999999999999999988888776
No 112
>cd05760 Ig2_PTK7 Second immunoglobulin (Ig)-like domain of protein tyrosine kinase (PTK) 7, also known as CCK4. Ig2_PTK7: domain similar to the second immunoglobulin (Ig)-like domain in protein tyrosine kinase (PTK) 7, also known as CCK4. PTK7 is a subfamily of the receptor protein tyrosine kinase family, and is referred to as an RPTK-like molecule. RPTKs transduce extracellular signals across the cell membrane, and play important roles in regulating cell proliferation, migration, and differentiation. PTK7 is organized as an extracellular portion having seven Ig-like domains, a single transmembrane region, and a cytoplasmic tyrosine kinase-like domain. PTK7 is considered a pseudokinase as it has several unusual residues in some of the highly conserved tyrosine kinase (TK) motifs; it is predicted to lack TK activity. PTK7 may function as a cell-adhesion molecule. PTK7 mRNA is expressed at high levels in placenta, melanocytes, liver, lung, pancreas, and kidney. PTK7 is overexpressed in s
Probab=99.32 E-value=8.8e-12 Score=99.72 Aligned_cols=73 Identities=29% Similarity=0.585 Sum_probs=54.3
Q ss_pred EEEEEEeecCCCCeEEEEEcccccccccccccCCCCCCceEeecceEEEeCCCCCCCCeEEEEEEEeCceeEE-eEEEEE
Q psy12060 212 ITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVEDRGSYHCKASNKFGSII-SESVQL 290 (978)
Q Consensus 212 ~~l~C~~~g~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~d~G~Y~C~a~n~~g~~~-s~~~~l 290 (978)
++|.|.+.|.|.|+|+|+|+|.++.... ....+....++|.|.++ +.+|+|.|+|.|.|..|... +..++|
T Consensus 1 v~L~C~~~g~P~p~v~W~k~g~~l~~~~-------~~~~~~~~~~~L~I~~~-~~~D~G~Y~C~a~N~~G~~~s~~~~~l 72 (77)
T cd05760 1 VTLRCHIDGHPRPTYQWFRDGTPLSDGQ-------GNYSVSSKERTLTLRSA-GPDDSGLYYCCAHNAFGSVCSSQNFTL 72 (77)
T ss_pred CEEEEEeeecCCCcEEEEECCEECCCCC-------ccEEEeCCCCEEEEeeC-CcccCEEEEEEEEeCCCeEeeCceEEE
Confidence 4899999999999999999997652110 01112223468999998 89999999999999999864 345555
Q ss_pred EE
Q psy12060 291 AF 292 (978)
Q Consensus 291 ~v 292 (978)
.|
T Consensus 73 ~v 74 (77)
T cd05760 73 SI 74 (77)
T ss_pred EE
Confidence 54
No 113
>cd05732 Ig5_NCAM-1_like Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM) and similar proteins. Ig5_NCAM-1 like: domain similar to the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM mole
Probab=99.32 E-value=1.1e-11 Score=105.03 Aligned_cols=77 Identities=25% Similarity=0.449 Sum_probs=64.0
Q ss_pred CCCCCCCcEEEEEEEeecCCCeeEEEEcCccCCCCc-----eee----ecccEEEeCCCCCCCCeEEEEEEEeCCCceEE
Q psy12060 409 EAPKAGDKVRLECVAFGYPVPSYNWTRRGSPLPRNA-----YFE----NFNRILTIPNVKVEDQGEYICRASNDRSALES 479 (978)
Q Consensus 409 ~~v~~G~~~~l~C~~~g~p~~~v~W~~~~~~l~~~~-----~~~----~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~ 479 (978)
..+.+|++++|.|.+.|.|.|.|.|++++..+.... ++. .....|.|.+++.+|+|.|+|.|.|..|..+.
T Consensus 11 ~~~~~g~~v~l~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~ 90 (96)
T cd05732 11 QTAVELEQITLTCEAEGDPIPEITWRRATRNFSEGDKSLDGRIVVRGHARVSSLTLKDVQLTDAGRYDCEASNRIGGDQQ 90 (96)
T ss_pred eeEecCCcEEEEEEEeEcCCCcEEEEECCcccCCCCccccceEEEeCCccEEEEEECcCCcCcCEEeEEEEEeCCCCcEE
Confidence 466799999999999999999999999987665322 111 12358999999999999999999999999998
Q ss_pred EEEEEE
Q psy12060 480 SVTISI 485 (978)
Q Consensus 480 ~~~l~V 485 (978)
++.|.|
T Consensus 91 s~~l~v 96 (96)
T cd05732 91 SMYLEV 96 (96)
T ss_pred EEEEeC
Confidence 888765
No 114
>cd05874 Ig6_NrCAM Sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule). Ig6_NrCAM: sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and an intracellular domain. NrCAM is primarily expressed in the nervous system.
Probab=99.32 E-value=8.7e-12 Score=99.33 Aligned_cols=72 Identities=29% Similarity=0.522 Sum_probs=52.7
Q ss_pred EEEEEEeecCCCCeEEEEEcccccccccccccCCCCCCceEeecceEEEeCCCCC----CCCeEEEEEEEeCceeEEeEE
Q psy12060 212 ITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQV----EDRGSYHCKASNKFGSIISES 287 (978)
Q Consensus 212 ~~l~C~~~g~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~----~d~G~Y~C~a~n~~g~~~s~~ 287 (978)
+.|.|.+.|+|.|+|+|+|+|.++.. .......+...+++|.|..+ .. .|.|.|+|.|.|..|...+..
T Consensus 1 ~~l~C~a~G~P~P~i~W~k~g~~l~~------~~~~~~~~~~~~g~l~i~~~-~~~~~~~d~G~Y~C~A~N~~G~~~s~~ 73 (77)
T cd05874 1 IVIQCEAKGKPPPSFSWTRNGTHFDI------DKDPKVTMKPNTGTLVINIM-NGEKAEAYEGVYQCTARNERGAAVSNN 73 (77)
T ss_pred CEEEeeCcccCCCeEEEEECCeECCC------cCCCCEEEeCCCceEEEecc-ccCCCCCCCEEEEEEEEcCCCeEEeeE
Confidence 47999999999999999999875421 11111122234678888765 32 478999999999999988877
Q ss_pred EEE
Q psy12060 288 VQL 290 (978)
Q Consensus 288 ~~l 290 (978)
+.|
T Consensus 74 ~~~ 76 (77)
T cd05874 74 IVI 76 (77)
T ss_pred EEE
Confidence 665
No 115
>cd05760 Ig2_PTK7 Second immunoglobulin (Ig)-like domain of protein tyrosine kinase (PTK) 7, also known as CCK4. Ig2_PTK7: domain similar to the second immunoglobulin (Ig)-like domain in protein tyrosine kinase (PTK) 7, also known as CCK4. PTK7 is a subfamily of the receptor protein tyrosine kinase family, and is referred to as an RPTK-like molecule. RPTKs transduce extracellular signals across the cell membrane, and play important roles in regulating cell proliferation, migration, and differentiation. PTK7 is organized as an extracellular portion having seven Ig-like domains, a single transmembrane region, and a cytoplasmic tyrosine kinase-like domain. PTK7 is considered a pseudokinase as it has several unusual residues in some of the highly conserved tyrosine kinase (TK) motifs; it is predicted to lack TK activity. PTK7 may function as a cell-adhesion molecule. PTK7 mRNA is expressed at high levels in placenta, melanocytes, liver, lung, pancreas, and kidney. PTK7 is overexpressed in s
Probab=99.31 E-value=1.1e-11 Score=99.12 Aligned_cols=70 Identities=36% Similarity=0.604 Sum_probs=57.0
Q ss_pred EEEEEEEeecCCCeeEEEEcCccCCCCc---eeeecccEEEeCCCCCCCCeEEEEEEEeCCCceEE--EEEEEEE
Q psy12060 417 VRLECVAFGYPVPSYNWTRRGSPLPRNA---YFENFNRILTIPNVKVEDQGEYICRASNDRSALES--SVTISIQ 486 (978)
Q Consensus 417 ~~l~C~~~g~p~~~v~W~~~~~~l~~~~---~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~--~~~l~V~ 486 (978)
++|.|.+.|.|.|+|+|+|+|.++.... ......+.|.|.++..+|+|.|+|.|.|..|.... .++|.|.
T Consensus 1 v~L~C~~~g~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~s~~~~~l~v~ 75 (77)
T cd05760 1 VTLRCHIDGHPRPTYQWFRDGTPLSDGQGNYSVSSKERTLTLRSAGPDDSGLYYCCAHNAFGSVCSSQNFTLSII 75 (77)
T ss_pred CEEEEEeeecCCCcEEEEECCEECCCCCccEEEeCCCCEEEEeeCCcccCEEEEEEEEeCCCeEeeCceEEEEEe
Confidence 5799999999999999999999886543 22334568999999999999999999999998754 4555553
No 116
>cd05744 Ig_Myotilin_C_like Immunoglobulin (Ig)-like domain of myotilin, palladin, and myopalladin. Ig_Myotilin_like_C: immunoglobulin (Ig)-like domain in myotilin, palladin, and myopalladin. Myotilin, palladin, and myopalladin function as scaffolds that regulate actin organization. Myotilin and myopalladin are most abundant in skeletal and cardiac muscle; palladin is ubiquitously expressed in the organs of developing vertebrates and plays a key role in cellular morphogenesis. The three family members each interact with specific molecular partners: all three bind to alpha-actinin; in addition, palladin also binds to vasodilator-stimulated phosphoprotein (VASP) and ezrin, myotilin binds to filamin and actin, and myopalladin also binds to nebulin and cardiac ankyrin repeat protein (CARP).
Probab=99.31 E-value=1.3e-11 Score=97.99 Aligned_cols=70 Identities=30% Similarity=0.613 Sum_probs=59.6
Q ss_pred EEEEEeeccCCCCeeEEeeCCEEecCC-CcEEEeecC----cEEEccccCCCCEEEEEEEEeCCceeeeeEEEEE
Q psy12060 606 VTIFCNPEAAPKPKFVWKKDGNIIGSG-GRRKIFENG----NLLISPVSRDDSGIYSCTATNVHGMDESKGRLIV 675 (978)
Q Consensus 606 ~~l~C~~~~~p~~~i~W~~~g~~~~~~-~~~~~~~~~----~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v 675 (978)
++|.|.+.|.|.|.+.|+|++..+... .++.+...+ +|.|.+++.+|+|.|+|.|.|..|.....+.|.|
T Consensus 1 v~L~C~v~G~P~P~v~W~k~~~~i~~~~~r~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~v 75 (75)
T cd05744 1 VRLECRVSAIPPPQIFWKKNNEMLTYNTDRISLYQDNCGRICLLIQNANKEDAGWYTVSAVNEAGVVSCNARLDV 75 (75)
T ss_pred CEEEEEEeecCCCeEEEEECCEECCCCCCcEEEEEcCCCeEEEEECCCCcccCEEEEEEEEcCCCcEEEEEEEeC
Confidence 479999999999999999999998743 455554332 5999999999999999999999999998888764
No 117
>cd05733 Ig6_L1-CAM_like Sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins. Ig6_L1-CAM_like: domain similar to the sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains NrCAM [Ng(neuronglia)CAM-related cell adhesion molecule], which is primarily expressed in the nervous system, and human neurofascin.
Probab=99.31 E-value=6.8e-12 Score=100.36 Aligned_cols=71 Identities=34% Similarity=0.667 Sum_probs=54.0
Q ss_pred EEEEEEeecCCCCeEEEEEcccccccccccccCCCCCCceE--eecceEEEeCCC---CCCCCeEEEEEEEeCceeEEeE
Q psy12060 212 ITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFT--LSGGNLIINDPR---QVEDRGSYHCKASNKFGSIISE 286 (978)
Q Consensus 212 ~~l~C~~~g~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~i~~~~---~~~d~G~Y~C~a~n~~g~~~s~ 286 (978)
++|.|.+.|+|.|+|+|+|||.++.. ....++. ..+++|.|..+. ..+|+|.|+|.|.|..|...|.
T Consensus 1 i~l~C~~~G~P~P~v~W~k~g~~l~~--------~~~~~~~~~~~~g~L~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~s~ 72 (77)
T cd05733 1 IVIKCEAKGNPPPTFSWTRNGTHFDP--------EKDPRVTMKPDSGTLVIDNMNGGRAEDYEGEYQCYASNELGTAISN 72 (77)
T ss_pred CEEEeeCcccCCCeEEEEECCeECCC--------CCCCCEEEeCCCCEEEEeccCCCCCcCCCEEEEEEEEcCCCcEEcc
Confidence 47999999999999999999875421 1122332 346889998762 1378999999999999998887
Q ss_pred EEEE
Q psy12060 287 SVQL 290 (978)
Q Consensus 287 ~~~l 290 (978)
.+.|
T Consensus 73 ~~~l 76 (77)
T cd05733 73 EIHL 76 (77)
T ss_pred ccEE
Confidence 7665
No 118
>cd05875 Ig6_hNeurofascin_like Sixth immunoglobulin (Ig)-like domain of human neurofascin (NF). Ig6_hNeurofascin_like: the sixth immunoglobulin (Ig)-like domain of human neurofascin (NF). NF belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and a cytoplasmic domain. NF has many alternatively spliced isoforms having different temporal expression patterns during development. NF participates in axon subcellular targeting and synapse formation, however little is known of the functions of the different isoforms.
Probab=99.31 E-value=1.2e-11 Score=98.62 Aligned_cols=71 Identities=28% Similarity=0.603 Sum_probs=53.4
Q ss_pred EEEEEEeecCCCCeEEEEEcccccccccccccCCCCCCceE--eecceEEEeCCC--C-CCCCeEEEEEEEeCceeEEeE
Q psy12060 212 ITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFT--LSGGNLIINDPR--Q-VEDRGSYHCKASNKFGSIISE 286 (978)
Q Consensus 212 ~~l~C~~~g~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~i~~~~--~-~~d~G~Y~C~a~n~~g~~~s~ 286 (978)
+.|.|.+.|+|.|+|+|+|+|..+.. ..+.++. ..+++|.|..+. . .+|+|.|+|.|.|..|...+.
T Consensus 1 ~~l~C~~~G~P~P~v~W~k~g~~~~~--------~~~~~~~~~~~~~~L~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~s~ 72 (77)
T cd05875 1 IIIECEAKGNPVPTFQWTRNGKFFNV--------AKDPRVSMRRRSGTLVIDFSGGGRPEDYEGEYQCFARNNLGTALSN 72 (77)
T ss_pred CEEEEeccccCCCEEEEEECCEEccC--------cCCCcEEEeCCCceEEEeccCCCCCCCCCEEEEEEEEeccceEEEE
Confidence 47999999999999999999965421 1122333 357789998651 1 357999999999999998888
Q ss_pred EEEE
Q psy12060 287 SVQL 290 (978)
Q Consensus 287 ~~~l 290 (978)
.+.|
T Consensus 73 ~~~~ 76 (77)
T cd05875 73 KILL 76 (77)
T ss_pred EEEE
Confidence 7765
No 119
>cd04978 Ig4_L1-NrCAM_like Fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related). Ig4_L1-NrCAM_like: fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related). These proteins belong to the L1 subfamily of cell adhesion molecules (CAMs) and are comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. These molecules are primarily expressed in the nervous system. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.
Probab=99.30 E-value=1.3e-11 Score=99.35 Aligned_cols=73 Identities=30% Similarity=0.594 Sum_probs=63.8
Q ss_pred CCeEEEEEeeccCCCCeeEEeeCCEEecCCCc--EEEeecCcEEEccccCCCCEEEEEEEEeCCceeeeeEEEEE
Q psy12060 603 GGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGR--RKIFENGNLLISPVSRDDSGIYSCTATNVHGMDESKGRLIV 675 (978)
Q Consensus 603 g~~~~l~C~~~~~p~~~i~W~~~g~~~~~~~~--~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v 675 (978)
|+.+.|.|.+.|.|.|.|.|+++|..+..... ......+.|.|.+++.+|+|.|+|.|.|..|...+.+.|.|
T Consensus 1 G~~~~l~C~~~g~P~p~i~W~~~g~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~V 75 (76)
T cd04978 1 GETGRLDCEAEGIPQPTITWRLNGVPIEELPPDPRRRVDGGTLILSNVQPNDTAVYQCNASNVHGYLLANAFVHV 75 (76)
T ss_pred CCeEEEEEEceeeCCCEEEEEECCEECCCCCCcceEEccCCEEEECCCChhhCEEEEEEEEccCCeEEEeEEEEE
Confidence 78999999999999999999999998875442 23445677999999999999999999999999999888876
No 120
>cd07702 Ig2_VEGFR-1 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1). Ig2_VEGFR-1: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1). VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-1 binds VEGF-A strongly; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-1 may play an inhibitory rolet in the function of VEGFR-2 by binding VEGF-A and interfering with its interaction with VEGFR-2. VEGFR-1 has a signaling role in mediating monocyte chemotaxis and may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.
Probab=99.30 E-value=1.2e-11 Score=95.74 Aligned_cols=67 Identities=25% Similarity=0.359 Sum_probs=55.1
Q ss_pred EEEEEEEeecCCCeeEEEEcCccCCCC-ceeeecccEEEeCCCCCCCCeEEEEEEEeCCCceEEEEEE
Q psy12060 417 VRLECVAFGYPVPSYNWTRRGSPLPRN-AYFENFNRILTIPNVKVEDQGEYICRASNDRSALESSVTI 483 (978)
Q Consensus 417 ~~l~C~~~g~p~~~v~W~~~~~~l~~~-~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l 483 (978)
+.|.|.+.|.|.|++.|+|++.++... ......+.+|.|.++..+|+|.|+|.|.|..........+
T Consensus 1 ~~l~c~v~g~P~P~v~W~kdg~~l~~~~~~~~~~~~~L~I~~v~~~D~G~YtC~a~~~~~~~~~~~~i 68 (72)
T cd07702 1 YRLTPKVKAFPAPEVIWLKDGLPAAEKCSRYHVDGYSLVIKDVTEEDAGIYTILLGIKQYNLFKNLTI 68 (72)
T ss_pred CeEEeeEEEcCCCeEEEEECCEECCCCCcEEEeCCCEEEECcCCHHHCEEEEEEEEccccceEeeEEE
Confidence 469999999999999999999998754 3444455689999999999999999999987665554443
No 121
>cd05740 Ig_CEACAM_D4 Fourth immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM). Ig_CEACAM_D4: immunoglobulin (Ig)-like domain 4 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the
Probab=99.30 E-value=2.2e-11 Score=100.55 Aligned_cols=81 Identities=23% Similarity=0.347 Sum_probs=65.0
Q ss_pred CCCcceeecCCCeEEEEEeeccCCCCeeEEeeCCEEecCCCcEEEe-ecCcEEEccccCCCCEEEEEEEEeCCceeee-e
Q psy12060 593 PLESETYAGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIF-ENGNLLISPVSRDDSGIYSCTATNVHGMDES-K 670 (978)
Q Consensus 593 ~~~~~~~~~~g~~~~l~C~~~~~p~~~i~W~~~g~~~~~~~~~~~~-~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~-~ 670 (978)
.......+.+|++++|.|.+.|. .|.+.|++++..+.... ..+. ..++|.|.+++.+|+|.|+|.|.|..|...+ .
T Consensus 8 ~~~~~~~v~~g~~v~l~C~a~g~-~p~i~W~kng~~l~~~~-~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~S~~ 85 (91)
T cd05740 8 NSVGNQPPEDNQPVTLTCEAEGQ-ATYIWWVNNGSLLVPPR-LQLSNDNRTLTFNNVTRSDTGHYQCEASNEVSNMTSDP 85 (91)
T ss_pred cccCccccccCCcEEEEEEeCCC-CCEEEEEECCEECCCCC-EEEeCCCCEEEECcCChhhCEEEEEEEEcCCCCEEeee
Confidence 33344568899999999999999 99999999999876543 4443 3457999999999999999999999998665 3
Q ss_pred EEEEE
Q psy12060 671 GRLIV 675 (978)
Q Consensus 671 ~~l~v 675 (978)
+.|.|
T Consensus 86 ~~L~V 90 (91)
T cd05740 86 YILNV 90 (91)
T ss_pred EEEEe
Confidence 45544
No 122
>cd04968 Ig3_Contactin_like Third Ig domain of contactin. Ig3_Contactin_like: Third Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week
Probab=99.30 E-value=2.1e-11 Score=100.99 Aligned_cols=86 Identities=20% Similarity=0.277 Sum_probs=70.5
Q ss_pred ceeeccCCcccccCCCceeEEEEeecCCCCeeEEeECCEECCCCCCCCCCCCcEEEecCEEEEEeCCCCCCCeEEEEEEE
Q psy12060 489 PNFTIPLTDKHMDNQADLTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQDNVLTIRYLNPERDPAMYQCRAK 568 (978)
Q Consensus 489 p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~i~W~~~g~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~d~G~Y~C~a~ 568 (978)
|.+...+....+.+|+++.|.|.+.|.|.+.++|+|++..+.. ........+.|.|.++.. +|+|.|+|.|.
T Consensus 2 ~~~~~~p~~~~~~~g~~v~l~C~~~g~P~p~v~W~k~~~~~~~-------~~~~~~~~~~L~i~~v~~-~D~G~Y~C~a~ 73 (88)
T cd04968 2 SIIVVFPKDTYALKGQNVTLECFALGNPVPQIKWRKVDGSMPS-------SAEISMSGAVLKIPNIQF-EDEGTYECEAE 73 (88)
T ss_pred CcEEECCCceEEeCCCcEEEEEEeeEeCCCEEEEEECCCcCCC-------ccEEEEeCCEEEECCCCc-ccCEEEEEEEE
Confidence 3445556677789999999999999999999999998876542 222335677999999996 99999999999
Q ss_pred cCCCceeeEEEEEE
Q psy12060 569 NQLKTRYSSAQLRV 582 (978)
Q Consensus 569 n~~g~~~~~~~l~v 582 (978)
|..|....++.|.|
T Consensus 74 N~~G~~~~~~~l~V 87 (88)
T cd04968 74 NIKGKDTHQGRIYV 87 (88)
T ss_pred ECCCcEEEEEEEEE
Confidence 99999888887765
No 123
>cd05771 IgC_Tapasin_R Tapasin-R immunoglobulin-like domain. IgC_Tapasin_R: Immunoglobulin-like domain on Tapasin-R. Tapasin is a V-C1 (variable-constant) immunoglobulin superfamily molecule present in the endoplasmic reticulum (ER), where it links MHC class I molecules to the transporter associated with antigen processing (TAP). Tapasin-R is a tapasin-related protein that contains similar structural motifs to Tapasin, with some marked differences, especially in the V domain, transmembrane and cytoplasmic regions. The majority of Tapasin-R is located within the ER; however, there may be some expression of Tapasin-R at the cell surface. Tapasin-R lacks an obvious ER retention signal.
Probab=99.30 E-value=3.7e-11 Score=109.42 Aligned_cols=119 Identities=24% Similarity=0.382 Sum_probs=86.0
Q ss_pred EEEeCCCCCCCCeEEEEEEEeCCCceEEEEEEEEEeeceeeccCCcccccCCCceeEEEEeecC-CC-CeeEEeECCEEC
Q psy12060 452 ILTIPNVKVEDQGEYICRASNDRSALESSVTISIQAEPNFTIPLTDKHMDNQADLTWTCEAFGV-PD-VTYSWFRNGELL 529 (978)
Q Consensus 452 ~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~-p~-~~i~W~~~g~~~ 529 (978)
+|.|.+++.+|+|.|.|.+.+..+.....+.|.|..+|.+.+.+.......|+.++|.|.+.|. |. ++|+|+++|...
T Consensus 2 sL~i~~v~~~D~G~Y~C~~~~~~~~~~~~~~l~v~~~P~v~~~~~~~~~~~~~~~~L~C~a~g~~P~~~~i~W~~~g~~~ 81 (139)
T cd05771 2 SLTLPGLTVHDEGTYICSVSTPPHQAQQIIQLSVSEPPRVRLSLEKLVSMIEEPQTLICHIAGYYPLDVQVEWTREPPGD 81 (139)
T ss_pred eEEECCCCHHHCEEEEEEEEccCcceeeEEEEEEecCCceEEeCCCceeecCCcEEEEEEECCCCCCCeEEEEEECCCCC
Confidence 6899999999999999999998888899999999999998776665555578999999999986 54 589999998642
Q ss_pred CC-----CCC----CCCCCCcEEEecCEEEEEeCCCCCCCeEEEEEEEcCC
Q psy12060 530 NS-----ETL----PLEDQDRYFIQDNVLTIRYLNPERDPAMYQCRAKNQL 571 (978)
Q Consensus 530 ~~-----~~~----~~~~~~~~~~~~~~l~i~~~~~~~d~G~Y~C~a~n~~ 571 (978)
.. ... .....+........|.+.... .++...|+|.+.+..
T Consensus 82 ~~~~~~~~~~~~~~~~~~~dgt~~~~s~L~v~~~~-~~~g~~ytC~V~H~~ 131 (139)
T cd05771 82 SPPPVSLSNVSFSSHRQHQDGTYSLSSHLTLEPGT-EDAGATYTCRVSHVS 131 (139)
T ss_pred ccceeccCCeEecceEeCCCCCEEEEEEEEecCCc-cCCCCEEEEEEEcCC
Confidence 21 000 000112222233356665443 245679999998754
No 124
>cd05773 Ig8_hNephrin_like Eighth immunoglobulin-like domain of nephrin. Ig8_hNephrin_like: domain similar to the eighth immunoglobulin-like domain in human nephrin. Nephrin is an integral component of the slit diaphragm, and is a central component of the glomerular ultrafilter. Nephrin plays a structural role, and has a role in signaling. Nephrin is a transmembrane protein having a short intracellular portion, and an extracellular portion comprised of eight Ig-like domains, and one fibronectin type III-like domain. The extracellular portions of nephrin, from neighboring foot processes of separate podocyte cells, may interact with each other, and in association with other components of the slit diaphragm, form a porous molecular sieve within the slit pore. The intracellular portion of nephrin is associated with linker proteins, which connect nephrin to the actin cytoskeleton. The intracellular portion is tyrosine phosphorylated, and mediates signaling from the slit diaphragm into the p
Probab=99.29 E-value=3.4e-11 Score=103.51 Aligned_cols=95 Identities=25% Similarity=0.455 Sum_probs=72.5
Q ss_pred cCCccccCCCCcceee--cCCCeEEEEEeeccCCCCeeEEeeCCEEecCC-CcEEEe--e-----cCcEEEcccc-CCCC
Q psy12060 585 LKPSFKKRPLESETYA--GEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSG-GRRKIF--E-----NGNLLISPVS-RDDS 653 (978)
Q Consensus 585 ~~p~~~~~~~~~~~~~--~~g~~~~l~C~~~~~p~~~i~W~~~g~~~~~~-~~~~~~--~-----~~~l~i~~~~-~~d~ 653 (978)
++|.+...+....+.. ..|..++|.|.+.|.|.+.++|+++|..+... .++... . .+.|.|.++. .+|.
T Consensus 3 ~~P~~~~~~~~~~~~~~~~~g~~v~L~C~a~G~P~p~i~W~k~g~~l~~~~~r~~~~~~~~~~~~~s~L~I~~v~~~~D~ 82 (109)
T cd05773 3 FAPDLQKGPQLRKVASRGDGSSDANLVCQAQGVPRVQFRWAKNGVPLDLGNPRYEETTEHTGTVHTSILTIINVSAALDY 82 (109)
T ss_pred cccccccCCceEEEEEecCCCCEEEEEEECcccCCCEEEEEECCEECCCCCCeEEEEeeccCccceeEEEECcCCccCCC
Confidence 4566655443323222 35689999999999999999999999988643 343321 1 2469999997 5899
Q ss_pred EEEEEEEEeCCceeeeeEEEEEEeCC
Q psy12060 654 GIYSCTATNVHGMDESKGRLIVLHGP 679 (978)
Q Consensus 654 G~Y~C~a~n~~g~~~~~~~l~v~~~p 679 (978)
|.|+|.|.|..|.....+.|.+...|
T Consensus 83 G~Y~C~A~N~~G~~~~~i~L~~~~~p 108 (109)
T cd05773 83 ALFTCTAHNSLGEDSLDIQLVSTSRP 108 (109)
T ss_pred EEEEEEEEeCCccCcEEEEEEecCCC
Confidence 99999999999999999999998766
No 125
>cd05726 Ig4_Robo Fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Ig4_Robo: domain similar to the fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni
Probab=99.29 E-value=1.6e-11 Score=102.00 Aligned_cols=75 Identities=29% Similarity=0.510 Sum_probs=62.8
Q ss_pred CCcEEEEEEEeecCCCeeEEEEcCccCC--------CCceee-ecccEEEeCCCCCCCCeEEEEEEEeCCCceEEEEEEE
Q psy12060 414 GDKVRLECVAFGYPVPSYNWTRRGSPLP--------RNAYFE-NFNRILTIPNVKVEDQGEYICRASNDRSALESSVTIS 484 (978)
Q Consensus 414 G~~~~l~C~~~g~p~~~v~W~~~~~~l~--------~~~~~~-~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~ 484 (978)
|+.++|.|.+.|.|.|.+.|+|++..+. ...++. ..++.|.|.+++.+|+|.|+|.|.|..|.....+.|.
T Consensus 1 G~~v~L~C~~~g~P~p~v~W~k~g~~~~~~~~~~~~~~~r~~v~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~ 80 (90)
T cd05726 1 GRTVTFQCEATGNPQPAIFWQKEGSQNLLFSYQPPQSSSRFSVSQTGDLTITNVQRSDVGYYICQTLNVAGSILTKAYLE 80 (90)
T ss_pred CCEEEEEEECCccCCCEEEEEeCCCcceeecccCCCCCCeEEECCCCeEEEeeCChhhCEEEEEEEEcCCCceEEEEEEE
Confidence 7899999999999999999999986531 122222 2356899999999999999999999999999999999
Q ss_pred EEee
Q psy12060 485 IQAE 488 (978)
Q Consensus 485 V~~~ 488 (978)
|...
T Consensus 81 V~~~ 84 (90)
T cd05726 81 VTDV 84 (90)
T ss_pred Eeec
Confidence 9864
No 126
>cd05724 Ig2_Robo Second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Ig2_Robo: domain similar to the second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antago
Probab=99.29 E-value=2.4e-11 Score=100.61 Aligned_cols=75 Identities=28% Similarity=0.562 Sum_probs=59.3
Q ss_pred ccCcEEEEEEe-ecCCCCeEEEEEcccccccccccccCCCCCCceE-eecceEEEeCCCCCCCCeEEEEEEEeCceeEEe
Q psy12060 208 ILNDITLSCYA-GGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFT-LSGGNLIINDPRQVEDRGSYHCKASNKFGSIIS 285 (978)
Q Consensus 208 ~g~~~~l~C~~-~g~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~i~~~~~~~d~G~Y~C~a~n~~g~~~s 285 (978)
+|+++.|.|.+ .|.|.|++.|+|+|..+.. ...++. ..+++|.|.++ +.+|+|.|+|.|.|..|...+
T Consensus 10 ~G~~v~l~C~~~~g~p~p~i~W~k~g~~~~~---------~~~~~~~~~~~~L~I~~~-~~~D~G~Y~C~a~N~~G~~~s 79 (86)
T cd05724 10 VGEMAVLECSPPRGHPEPTVSWRKDGQPLNL---------DNERVRIVDDGNLLIAEA-RKSDEGTYKCVATNMVGERES 79 (86)
T ss_pred CCCCEEEEEECCCCCCCCEEEEEECCEECCC---------CCCCEEEccCCEEEEeEC-CcccCEEEEEEEEeccCceee
Confidence 46679999998 7999999999999875431 122222 34578999998 899999999999999999877
Q ss_pred EEEEEEE
Q psy12060 286 ESVQLAF 292 (978)
Q Consensus 286 ~~~~l~v 292 (978)
..+.|.|
T Consensus 80 ~~~~l~V 86 (86)
T cd05724 80 AAARLSV 86 (86)
T ss_pred eeEEEEC
Confidence 7777653
No 127
>cd05856 Ig2_FGFRL1-like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1). Ig2_FGFRL1-like: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1). FGFRL1 is comprised of a signal peptide, three extracellular Ig-like modules, a transmembrane segment, and a short intracellular domain. FGFRL1 is expressed preferentially in skeletal tissues. Similar to FGF receptors, the expressed protein interacts specifically with heparin and with FGF2. FGFRL1 does not have a protein tyrosine kinase domain at its C terminus; neither does its cytoplasmic domain appear to interact with a signaling partner. It has been suggested that FGFRL1 may not have any direct signaling function, but instead acts as a decoy receptor trapping FGFs and preventing them from binding other receptors.
Probab=99.28 E-value=1.8e-11 Score=100.40 Aligned_cols=74 Identities=32% Similarity=0.640 Sum_probs=62.8
Q ss_pred CCCCcEEEEEEEeecCCCeeEEEEcCccCCCCceee--ecccEEEeCCCCCCCCeEEEEEEEeCCCceEEEEEEEE
Q psy12060 412 KAGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYFE--NFNRILTIPNVKVEDQGEYICRASNDRSALESSVTISI 485 (978)
Q Consensus 412 ~~G~~~~l~C~~~g~p~~~v~W~~~~~~l~~~~~~~--~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V 485 (978)
..|++++|.|.+.|.|.|.+.|+|++..+....... ....+|.|.+++.+|+|.|+|.|.|..|..+.++.|.|
T Consensus 7 ~~G~~v~L~C~~~g~p~p~i~W~k~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~~v~v 82 (82)
T cd05856 7 PVGSSVRLKCVASGNPRPDITWLKDNKPLTPTEIGESRKKKWTLSLKNLKPEDSGKYTCHVSNRAGEINATYKVDV 82 (82)
T ss_pred cCCCeEEEEEEeeEeCCCcEEEEECCcCCcCCccceecCceEEEEEccCChhhCEEEEEEEEcCCccEEEEEEEeC
Confidence 479999999999999999999999999885443322 23468999999999999999999999999888887764
No 128
>cd05747 Ig5_Titin_like M5, fifth immunoglobulin (Ig)-like domain of human titin C terminus and similar proteins. Ig5_Titin_like: domain similar to the M5, fifth immunoglobulin (Ig)-like domain from the human titin C terminus. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic; depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone, and appears to function similar to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching.
Probab=99.28 E-value=2.7e-11 Score=101.16 Aligned_cols=85 Identities=18% Similarity=0.316 Sum_probs=70.6
Q ss_pred eceeeccCCcccccCCCceeEEEEeecCCCCeeEEeECCEECCCCCCCCCCCCcEEEe----cCEEEEEeCCCCCCCeEE
Q psy12060 488 EPNFTIPLTDKHMDNQADLTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQ----DNVLTIRYLNPERDPAMY 563 (978)
Q Consensus 488 ~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~i~W~~~g~~~~~~~~~~~~~~~~~~~----~~~l~i~~~~~~~d~G~Y 563 (978)
+|.+...+.+..+.+|+.+.|.|.+.|.|.+.+.|+|+|..+.. ..++.+. ...|.|.++.. +|+|.|
T Consensus 3 ~~~~~~~p~~~~~~~G~~~~L~C~~~g~P~p~v~W~k~g~~l~~-------~~~~~~~~~~~~~~L~i~~~~~-~D~G~Y 74 (92)
T cd05747 3 PATILTKPRSLTVSEGESARFSCDVDGEPAPTVTWMREGQIIVS-------SQRHQITSTEYKSTFEISKVQM-SDEGNY 74 (92)
T ss_pred CCcccccCccEEEeCCCcEEEEEEEeecCCCEEEEEECCEECCC-------CCcEEEEEcCCeeEEEECCCCc-ccCEeE
Confidence 67777788888999999999999999999999999999998762 2233332 24899999986 999999
Q ss_pred EEEEEcCCCceeeEEEE
Q psy12060 564 QCRAKNQLKTRYSSAQL 580 (978)
Q Consensus 564 ~C~a~n~~g~~~~~~~l 580 (978)
+|.|.|..|....+..|
T Consensus 75 ~C~a~N~~G~~~~~~~l 91 (92)
T cd05747 75 TVVVENSEGKQEAQFTL 91 (92)
T ss_pred EEEEEcCCCCEeEEEEe
Confidence 99999999987766554
No 129
>PF00041 fn3: Fibronectin type III domain; InterPro: IPR003961 Fibronectins are multi-domain glycoproteins found in a soluble form in plasma, and in an insoluble form in loose connective tissue and basement membranes []. They contain multiple copies of 3 repeat regions (types I, II and III), which bind to a variety of substances including heparin, collagen, DNA, actin, fibrin and fibronectin receptors on cell surfaces. The wide variety of these substances means that fibronectins are involved in a number of important functions: e.g., wound healing; cell adhesion; blood coagulation; cell differentiation and migration; maintenance of the cellular cytoskeleton; and tumour metastasis []. The role of fibronectin in cell differentiation is demonstrated by the marked reduction in the expression of its gene when neoplastic transformation occurs. Cell attachment has been found to be mediated by the binding of the tetrapeptide RGDS to integrins on the cell surface [], although related sequences can also display cell adhesion activity. Plasma fibronectin occurs as a dimer of 2 different subunits, linked together by 2 disulphide bonds near the C terminus. The difference in the 2 chains occurs in the type III repeat region and is caused by alternative splicing of the mRNA from one gene []. The observation that, in a given protein, an individual repeat of one of the 3 types (e.g., the first FnIII repeat) shows much less similarity to its subsequent tandem repeats within that protein than to its equivalent repeat between fibronectins from other species, has suggested that the repeating structure of fibronectin arose at an early stage of evolution. It also seems to suggest that the structure is subject to high selective pressure []. The fibronectin type III repeat region is an approximately 100 amino acid domain, different tandem repeats of which contain binding sites for DNA, heparin and the cell surface []. The superfamily of sequences believed to contain FnIII repeats represents 45 different families, the majority of which are involved in cell surface binding in some manner, or are receptor protein tyrosine kinases, or cytokine receptors.; GO: 0005515 protein binding; PDB: 1UEM_A 1TDQ_A 1X5I_A 2IC2_B 2IBG_C 2IBB_A 3R8Q_A 2FNB_A 1FNH_A 2EDB_A ....
Probab=99.28 E-value=7.5e-12 Score=103.73 Aligned_cols=83 Identities=30% Similarity=0.446 Sum_probs=69.1
Q ss_pred CCCceeecccccCcEEEEEEeCCCCCCCCCcceEEEEEEecCCcc-ceeeeeeeccceeEEEEEcCCCCceeeEEEEEEE
Q psy12060 888 APSRIGGGGGKIGDLSISWEPLPREKQNAPNIYYKIFWRKKNDTE-FQSETLKEYGNVGIAVVRIPSEFYYTEYEVKVQA 966 (978)
Q Consensus 888 ~P~~~~~~~~~~~si~v~W~~p~~~~~~g~i~~Y~i~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~L~p~t~Y~~~V~A 966 (978)
+|.++.+...+.++|.|+|++|+ ..++.+.+|.|+|+..+... +....+.. +. ..+.|.+|.|++.|.|+|+|
T Consensus 2 ~P~~l~v~~~~~~sv~v~W~~~~--~~~~~~~~y~v~~~~~~~~~~~~~~~~~~--~~--~~~~i~~L~p~t~Y~~~v~a 75 (85)
T PF00041_consen 2 APENLSVSNISPTSVTVSWKPPS--SGNGPITGYRVEYRSVNSTSDWQEVTVPG--NE--TSYTITGLQPGTTYEFRVRA 75 (85)
T ss_dssp SSEEEEEEEECSSEEEEEEEESS--STSSSESEEEEEEEETTSSSEEEEEEEET--TS--SEEEEESCCTTSEEEEEEEE
T ss_pred cCcCeEEEECCCCEEEEEEECCC--CCCCCeeEEEEEEEecccceeeeeeeeee--ee--eeeeeccCCCCCEEEEEEEE
Confidence 68999999999999999999944 88999999999999887655 44443332 22 24668999999999999999
Q ss_pred ecCCCCCCCC
Q psy12060 967 INDVGPGPES 976 (978)
Q Consensus 967 ~n~~G~gp~S 976 (978)
+|..|.|++|
T Consensus 76 ~~~~g~g~~S 85 (85)
T PF00041_consen 76 VNSDGEGPPS 85 (85)
T ss_dssp EETTEEEEEE
T ss_pred EeCCcCcCCC
Confidence 9999999986
No 130
>cd05743 Ig_Perlecan_D2_like Immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2. Ig_Perlecan_D2_like: the immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2. Perlecan consists of five domains. Domain I has three putative heparan sulfate attachment sites; domain II has four LDL receptor-like repeats, and one Ig-like repeat; domain III resembles the short arm of laminin chains; domain IV has multiple Ig-like repeats (21 repeats in human perlecan); and domain V resembles the globular G domain of the laminin A chain and internal repeats of EGF. Perlecan may participate in a variety of biological functions including cell binding, LDL-metabolism, basement membrane assembly and selective permeability, calcium binding, and growth- and neurite-promoting activities.
Probab=99.28 E-value=2.1e-11 Score=97.98 Aligned_cols=72 Identities=35% Similarity=0.522 Sum_probs=60.0
Q ss_pred CCcEEEEEEEeecCCCeeEEEEcCccCCCCceee----ecccEEEeCCCCCCCCeEEEEEEEeCCCceEEEEEEEE
Q psy12060 414 GDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYFE----NFNRILTIPNVKVEDQGEYICRASNDRSALESSVTISI 485 (978)
Q Consensus 414 G~~~~l~C~~~g~p~~~v~W~~~~~~l~~~~~~~----~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V 485 (978)
|++++|.|.+.|.|.|.|+|++++..+....++. .....|.|.++..+|+|.|+|.|.|..|.......+.+
T Consensus 1 G~~v~l~C~~~g~P~p~v~W~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~~~~ 76 (78)
T cd05743 1 GETVEFTCVATGVPTPIINWRLNWGHVPDSARVSITSEGGYGTLTIRDVKESDQGAYTCEAINTRGMVFGIPDGIL 76 (78)
T ss_pred CCEEEEEEEEEEecCCEEEEEECCeECCCCCCEEEEECCCEEEEEECCCChHHCEEEEEEEEecCCEEEecccEEE
Confidence 7899999999999999999999998887654332 22368999999999999999999999998876655443
No 131
>cd05869 Ig5_NCAM-1 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). Ig5_NCAM-1: The fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM) and heterophilic (NCAM-non-NCAM) interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (tr
Probab=99.28 E-value=2e-11 Score=103.10 Aligned_cols=74 Identities=26% Similarity=0.478 Sum_probs=61.5
Q ss_pred CCCCcEEEEEEEeecCCCeeEEEEcCccCCCCc-----eee----ecccEEEeCCCCCCCCeEEEEEEEeCCCceEEEEE
Q psy12060 412 KAGDKVRLECVAFGYPVPSYNWTRRGSPLPRNA-----YFE----NFNRILTIPNVKVEDQGEYICRASNDRSALESSVT 482 (978)
Q Consensus 412 ~~G~~~~l~C~~~g~p~~~v~W~~~~~~l~~~~-----~~~----~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~ 482 (978)
..|+.++|.|.+.|.|.|.|+|++++..+.... ++. ...+.|.|.+++.+|+|.|+|.|.|..|..+.++.
T Consensus 15 ~~g~~v~l~C~~~G~P~P~v~W~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~~ 94 (97)
T cd05869 15 ELEEQITLTCEASGDPIPSITWRTSTRNISSEEKTLDGHIVVRSHARVSSLTLKYIQYTDAGEYLCTASNTIGQDSQSMY 94 (97)
T ss_pred EcCCCEEEEEEeeEeCCCEEEEEECCccccCCccccCccEEEEcCccEEEEEEecCccCcCEEEEEEEecCCCCeeEEEE
Confidence 358999999999999999999999988765322 111 11257999999999999999999999999999888
Q ss_pred EEE
Q psy12060 483 ISI 485 (978)
Q Consensus 483 l~V 485 (978)
|.|
T Consensus 95 l~v 97 (97)
T cd05869 95 LEV 97 (97)
T ss_pred EEC
Confidence 875
No 132
>cd05764 Ig_2 Subgroup of the immunoglobulin (Ig) superfamily. Ig_2: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=99.28 E-value=2.7e-11 Score=96.65 Aligned_cols=73 Identities=29% Similarity=0.621 Sum_probs=63.7
Q ss_pred CCeEEEEEeeccCCCCeeEEee-CCEEecCCCcEEEeecCcEEEccccCCCCEEEEEEEEeCCceeeeeEEEEE
Q psy12060 603 GGNVTIFCNPEAAPKPKFVWKK-DGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTATNVHGMDESKGRLIV 675 (978)
Q Consensus 603 g~~~~l~C~~~~~p~~~i~W~~-~g~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v 675 (978)
|+.+.|.|.+.|.|.|.+.|++ ++..+....+......++|.|..+..+|+|.|+|.|.|..|.....+.|.|
T Consensus 1 G~~~~l~C~~~g~P~p~v~W~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~v 74 (74)
T cd05764 1 GQRATLRCKARGDPEPAIHWISPDGKLISNSSRTLVYDNGTLDILITTVKDTGSFTCIASNAAGEATATVELHI 74 (74)
T ss_pred CCeEEEEEEccCcCCCEEEEEeCCCEEecCCCeEEEecCCEEEEEECChhhCEEEEEEEECCCCeEEEEEEEEC
Confidence 7899999999999999999997 677776666666667789999999999999999999999999888777654
No 133
>cd05726 Ig4_Robo Fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Ig4_Robo: domain similar to the fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni
Probab=99.28 E-value=2.4e-11 Score=100.96 Aligned_cols=76 Identities=34% Similarity=0.577 Sum_probs=65.7
Q ss_pred CCeEEEEEeeccCCCCeeEEeeCCEEe--------cCCCcEEEeecCcEEEccccCCCCEEEEEEEEeCCceeeeeEEEE
Q psy12060 603 GGNVTIFCNPEAAPKPKFVWKKDGNII--------GSGGRRKIFENGNLLISPVSRDDSGIYSCTATNVHGMDESKGRLI 674 (978)
Q Consensus 603 g~~~~l~C~~~~~p~~~i~W~~~g~~~--------~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~ 674 (978)
|+.++|.|.+.|.|.|.+.|+++|..+ ....++.+..++.|.|.+++.+|+|.|+|.|.|..|.....+.|.
T Consensus 1 G~~v~L~C~~~g~P~p~v~W~k~g~~~~~~~~~~~~~~~r~~v~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~ 80 (90)
T cd05726 1 GRTVTFQCEATGNPQPAIFWQKEGSQNLLFSYQPPQSSSRFSVSQTGDLTITNVQRSDVGYYICQTLNVAGSILTKAYLE 80 (90)
T ss_pred CCEEEEEEECCccCCCEEEEEeCCCcceeecccCCCCCCeEEECCCCeEEEeeCChhhCEEEEEEEEcCCCceEEEEEEE
Confidence 789999999999999999999988643 224456666677899999999999999999999999999999999
Q ss_pred EEeC
Q psy12060 675 VLHG 678 (978)
Q Consensus 675 v~~~ 678 (978)
|...
T Consensus 81 V~~~ 84 (90)
T cd05726 81 VTDV 84 (90)
T ss_pred Eeec
Confidence 9764
No 134
>cd04971 Ig_TrKABC_d5 Fifth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC. TrkABC_d5: the fifth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrkB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor foun
Probab=99.27 E-value=2.5e-11 Score=97.40 Aligned_cols=66 Identities=23% Similarity=0.429 Sum_probs=56.1
Q ss_pred EEEEEeecCCCeeEEEEcCccCCCCceee-----------ecccEEEeCCCCCCCCeEEEEEEEeCCCceEEEEEEE
Q psy12060 419 LECVAFGYPVPSYNWTRRGSPLPRNAYFE-----------NFNRILTIPNVKVEDQGEYICRASNDRSALESSVTIS 484 (978)
Q Consensus 419 l~C~~~g~p~~~v~W~~~~~~l~~~~~~~-----------~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~ 484 (978)
|.|.+.|.|.|+|+|+|+|.+|....... ...+.|.|.+++.+|+|.|+|.|.|..|..+.++.|.
T Consensus 3 i~~~v~G~P~P~v~W~k~g~~i~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~YtC~A~N~~G~~~~~~~~~ 79 (81)
T cd04971 3 IPFTVRGNPKPTLTWYHNGAVLNESDYIRTEIHYEVTTPTEYHGCLQFDNPTHVNNGNYTLVASNEYGQDSKSISAH 79 (81)
T ss_pred EEEEeEeeCCCcEEEEECCEECcCCCceeEEEEeecccccccEEEEEECCCCcccCeEEEEEEEeCCCCeeeEEEee
Confidence 78999999999999999999997654221 1234799999999999999999999999998887765
No 135
>cd05891 Ig_M-protein_C C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2). Ig_M-protein_C: the C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2). M-protein is a structural protein localized to the M-band, a transverse structure in the center of the sarcomere, and is a candidate for M-band bridges. M-protein is modular consisting mainly of repetitive IG-like and fibronectin type III (FnIII) domains, and has a muscle-type specific expression pattern. M-protein is present in fast fibers.
Probab=99.27 E-value=2.6e-11 Score=100.76 Aligned_cols=77 Identities=26% Similarity=0.440 Sum_probs=64.9
Q ss_pred CCCCCCCcEEEEEEEeecCCCeeEEEEcCccCCCCceee----e-cccEEEeCCCCCCCCeEEEEEEEeCCCceEEEEEE
Q psy12060 409 EAPKAGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYFE----N-FNRILTIPNVKVEDQGEYICRASNDRSALESSVTI 483 (978)
Q Consensus 409 ~~v~~G~~~~l~C~~~g~p~~~v~W~~~~~~l~~~~~~~----~-~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l 483 (978)
..+.+|+++.|.|.+.|.|.|.+.|+|++..+.....+. . ...+|.|.+++.+|+|.|+|.|.|..|....++.|
T Consensus 11 v~v~eG~~v~L~C~v~g~P~p~i~W~k~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~v 90 (92)
T cd05891 11 VTIMEGKTLNLTCTVFGNPDPEVIWFKNDQDIELSEHYSVKLEQGKYASLTIKGVTSEDSGKYSINVKNKYGGETVDVTV 90 (92)
T ss_pred EEEcCCCEEEEEEEEEEeCCCeEEEEECCEECCCCCCEEEEEcCCCEEEEEECCCChhhCEEEEEEEEeCCCceeeEEEE
Confidence 356799999999999999999999999999876554321 1 12479999999999999999999999999988887
Q ss_pred EE
Q psy12060 484 SI 485 (978)
Q Consensus 484 ~V 485 (978)
.|
T Consensus 91 ~~ 92 (92)
T cd05891 91 SV 92 (92)
T ss_pred EC
Confidence 65
No 136
>cd05870 Ig5_NCAM-2 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM). Ig5_NCAM-2: the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.
Probab=99.27 E-value=1.2e-11 Score=104.64 Aligned_cols=77 Identities=29% Similarity=0.518 Sum_probs=61.7
Q ss_pred CCCCCCCcEEEEEEEeecCCCeeEEEEc--CccCCC-----Cceeee----cccEEEeCCCCCCCCeEEEEEEEeCCCce
Q psy12060 409 EAPKAGDKVRLECVAFGYPVPSYNWTRR--GSPLPR-----NAYFEN----FNRILTIPNVKVEDQGEYICRASNDRSAL 477 (978)
Q Consensus 409 ~~v~~G~~~~l~C~~~g~p~~~v~W~~~--~~~l~~-----~~~~~~----~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~ 477 (978)
..+.+|++++|.|.+.|.|.|.|+|+|+ +..+.. ..++.. ...+|.|.+++.+|+|.|+|.|.|..|..
T Consensus 11 ~~~~~G~~v~l~C~~~G~P~p~i~W~k~~~g~~~~~~~~~~~~r~~v~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~ 90 (98)
T cd05870 11 ETTVENGAATLSCKAEGEPIPEITWKRASDGHTFSEGDKSPDGRIEVKGQHGESSLHIKDVKLSDSGRYDCEAASRIGGH 90 (98)
T ss_pred EEEcCCCcEEEEEecccCCCCeEEEEECCCCceeccCCcCcCceEEEeecCCeeEEEEeeCCcCCCEEEEEEEeccCCcc
Confidence 4667999999999999999999999994 333321 112211 23589999999999999999999999999
Q ss_pred EEEEEEEE
Q psy12060 478 ESSVTISI 485 (978)
Q Consensus 478 ~~~~~l~V 485 (978)
..++.|.|
T Consensus 91 ~~~~~l~~ 98 (98)
T cd05870 91 QKSMYLDI 98 (98)
T ss_pred eeEEEEeC
Confidence 88888765
No 137
>cd05748 Ig_Titin_like Immunoglobulin (Ig)-like domain of titin and similar proteins. Ig_Titin_like: immunoglobulin (Ig)-like domain found in titin-like proteins. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic, depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone. It appears to function similarly to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching. Within the sarcomere, titin is also attached to or is associated with myosin binding protein C (MyBP-C). MyBP-C appears to contribute to the generation of passive tension by titin, and similar to titin has repeated Ig-like and FN-
Probab=99.27 E-value=3.3e-11 Score=96.02 Aligned_cols=71 Identities=30% Similarity=0.447 Sum_probs=61.5
Q ss_pred eEEEEEeeccCCCCeeEEeeCCEEecCCCcEEEeec---CcEEEccccCCCCEEEEEEEEeCCceeeeeEEEEE
Q psy12060 605 NVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFEN---GNLLISPVSRDDSGIYSCTATNVHGMDESKGRLIV 675 (978)
Q Consensus 605 ~~~l~C~~~~~p~~~i~W~~~g~~~~~~~~~~~~~~---~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v 675 (978)
.+.|.|.+.|.|.|.+.|+++|..+..+.+..+... +.|.|.++..+|+|.|+|.|.|..|....++.|.|
T Consensus 1 ~~~l~c~~~G~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~V 74 (74)
T cd05748 1 SVRLEVPISGRPTPTVTWSKDGKPLKLSGRVQIETTASSTSLVIKNAERSDSGKYTLTLKNPAGEKSATINVKV 74 (74)
T ss_pred CEEEEeeEeeeCCCeEEEEECCEEcCCCCeEEEEECCCeEEEEECCCCcCcCEEEEEEEECCCccEEEEEEEEC
Confidence 378999999999999999999999877666665432 35999999999999999999999999988887764
No 138
>cd05731 Ig3_L1-CAM_like Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). Ig3_L1-CAM_like: domain similar to the third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM and human neurofascin.
Probab=99.27 E-value=2e-11 Score=96.73 Aligned_cols=69 Identities=42% Similarity=0.825 Sum_probs=59.2
Q ss_pred EEEEEEEeecCCCeeEEEEcCccCCCCce-eeecccEEEeCCCCCCCCeEEEEEEEeCCCceEEEEEEEE
Q psy12060 417 VRLECVAFGYPVPSYNWTRRGSPLPRNAY-FENFNRILTIPNVKVEDQGEYICRASNDRSALESSVTISI 485 (978)
Q Consensus 417 ~~l~C~~~g~p~~~v~W~~~~~~l~~~~~-~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V 485 (978)
++|.|.+.|.|.|.+.|+|++..+..... .......|.|.+++.+|+|.|+|.|.|..|..+.++.|.|
T Consensus 1 v~l~C~~~g~P~p~v~W~k~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V 70 (71)
T cd05731 1 LLLECIAEGLPTPEISWIKIGGELPADRTKFENFNKTLKIDNVSEEDDGEYRCTASNSLGSARHTISVTV 70 (71)
T ss_pred CEEEEEeeEecCCeEEEEECCeECCCCceeEecCCCEEEECCCCHHHCEEEEEEEEeCCceEEEEEEEEE
Confidence 47999999999999999999988754332 2344578999999999999999999999999988888876
No 139
>cd04976 Ig2_VEGFR Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR). Ig2_VEGFR: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A. VEGFR-1 may play an inhibitory part in these processes by binding VEGF and interfering with its interaction with VEGFR-2. VEGFR-1 has a signa
Probab=99.27 E-value=2.4e-11 Score=95.22 Aligned_cols=69 Identities=26% Similarity=0.419 Sum_probs=59.3
Q ss_pred EEEEEeeccCCCCeeEEeeCCEEecCCCcEEEeecCcEEEccccCCCCEEEEEEEEeCCceeeeeEEEEE
Q psy12060 606 VTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTATNVHGMDESKGRLIV 675 (978)
Q Consensus 606 ~~l~C~~~~~p~~~i~W~~~g~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v 675 (978)
+.|.|.+.|.|+|.+.|+|+|..+..+.+. ....++|.|.++..+|+|.|+|.|.|..|....+..+.+
T Consensus 1 ~~l~c~v~g~P~p~v~W~k~g~~l~~~~~~-~~~~~~L~I~~v~~~D~G~YtC~a~N~~g~~~~~~~~~~ 69 (71)
T cd04976 1 VRLPVKVKAYPPPEIQWYKNGKLISEKNRT-KKSGHSLTIKDVTEEDAGNYTVVLTNKQAKLEKRLTFTL 69 (71)
T ss_pred CEEEeEEEEeCCCEEEEEECCEECCCCCEE-EcCCCEEEECcCCHHHCEEEEEEEEcCCccEEEEEEEEE
Confidence 469999999999999999999998776443 445677999999999999999999999998877776655
No 140
>cd05864 Ig2_VEGFR-2 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2). Ig2_VEGF-2: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-2 (KDR/Flk-1) is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF-A also interacts with VEGFR-1, which it binds more strongly than VEGFR-2. VEGFR-2 and -1 may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.
Probab=99.26 E-value=2.1e-11 Score=94.27 Aligned_cols=68 Identities=25% Similarity=0.343 Sum_probs=57.7
Q ss_pred EEEEEeeccCCCCeeEEeeCCEEecCCCcEEEeecCcEEEccccCCCCEEEEEEEEeCCceeeeeEEEEE
Q psy12060 606 VTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTATNVHGMDESKGRLIV 675 (978)
Q Consensus 606 ~~l~C~~~~~p~~~i~W~~~g~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v 675 (978)
+.|.|.+.|.|.|.++|+|+|.++....+ +.....|.|.++..+|+|.|+|.|.|..|.......+.+
T Consensus 1 ~~~~c~v~G~P~P~v~W~k~g~~l~~~~~--~~~~~~L~I~~v~~~D~G~YtC~a~N~~G~~~~~~t~~l 68 (70)
T cd05864 1 VKIPVKYYGYPPPEVKWYKNGQLIVLNHT--FKRGVHLTIYEVTEKDAGNYTVVLTNPITKEEQRHTFQL 68 (70)
T ss_pred CEEEeEEEEeCCCEEEEEECCEECCCCCE--EccCCEEEECcCCHHHCEEEEEEEEECCCceeeEEEEEE
Confidence 36899999999999999999999876533 334457999999999999999999999998877766654
No 141
>cd04972 Ig_TrkABC_d4 Fourth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC. TrkABC_d4: the fourth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor fo
Probab=99.26 E-value=3.3e-11 Score=100.13 Aligned_cols=78 Identities=29% Similarity=0.442 Sum_probs=65.3
Q ss_pred eeecCCCeEEEEEeeccCCCCeeEEeeCCEEecCCCcEEE---eecCcEEEccccCCCCEEEEEEEEeCCceeeeeEEEE
Q psy12060 598 TYAGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKI---FENGNLLISPVSRDDSGIYSCTATNVHGMDESKGRLI 674 (978)
Q Consensus 598 ~~~~~g~~~~l~C~~~~~p~~~i~W~~~g~~~~~~~~~~~---~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~ 674 (978)
..+..|+.+.|.|.+.|.|.|.+.|+++|..+........ ...+.|.|.++..+|.|.|+|.|.|..|....++.|.
T Consensus 10 ~~v~~G~~v~l~C~~~G~P~p~v~W~~~g~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~g~Y~C~A~N~~G~~~~~~~L~ 89 (90)
T cd04972 10 TVVYEGGTATIRCTAEGSPLPKVEWIIAGLIVIQTRTDTLETTVDIYNLQLSNITSETQTTVTCTAENPVGQANVSVQVT 89 (90)
T ss_pred EEEcCCCcEEEEEEEEEcCCCeEEEEECCEEccCCccEEEEecCCEEEEEEecCCcccCEEEEEEEECCCCceeEEEEEe
Confidence 3478999999999999999999999999998765543222 1234699999999999999999999999998888775
Q ss_pred E
Q psy12060 675 V 675 (978)
Q Consensus 675 v 675 (978)
|
T Consensus 90 v 90 (90)
T cd04972 90 V 90 (90)
T ss_pred C
Confidence 4
No 142
>cd04970 Ig6_Contactin_like Sixth Ig domain of contactin. Ig6_Contactin_like: Sixth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week
Probab=99.26 E-value=2.3e-11 Score=99.89 Aligned_cols=76 Identities=28% Similarity=0.447 Sum_probs=63.0
Q ss_pred CeEEEEEeeccCCCC--eeEEeeCCEEecCCC---cE----EEeecCcEEEccccCCCCEEEEEEEEeCCceeeeeEEEE
Q psy12060 604 GNVTIFCNPEAAPKP--KFVWKKDGNIIGSGG---RR----KIFENGNLLISPVSRDDSGIYSCTATNVHGMDESKGRLI 674 (978)
Q Consensus 604 ~~~~l~C~~~~~p~~--~i~W~~~g~~~~~~~---~~----~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~ 674 (978)
++++|.|.+.|.|.| .+.|+++|..+.... ++ .....++|.|.+++.+|+|.|+|.|.|..|....++.|.
T Consensus 1 e~~~L~C~~~g~P~p~i~~~W~~~g~~i~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~~~~~l~ 80 (85)
T cd04970 1 ESITLQCHASHDPTLDLTFTWSFNGVPIDFDKDGGHYRRVGGKDSNGDLMIRNAQLKHAGKYTCTAQTVVDSLSASADLI 80 (85)
T ss_pred CcEEEEEEEecCCCCCeEEEEEECCeEeeccCCCccEEEEecccccceEEEccCCHHhCeeeEEEEecCCCcEEEEEEEE
Confidence 468999999999977 679999999876432 11 112456799999999999999999999999999999999
Q ss_pred EEeCC
Q psy12060 675 VLHGP 679 (978)
Q Consensus 675 v~~~p 679 (978)
|..+|
T Consensus 81 V~~pP 85 (85)
T cd04970 81 VRGPP 85 (85)
T ss_pred EECCC
Confidence 98765
No 143
>cd05743 Ig_Perlecan_D2_like Immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2. Ig_Perlecan_D2_like: the immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2. Perlecan consists of five domains. Domain I has three putative heparan sulfate attachment sites; domain II has four LDL receptor-like repeats, and one Ig-like repeat; domain III resembles the short arm of laminin chains; domain IV has multiple Ig-like repeats (21 repeats in human perlecan); and domain V resembles the globular G domain of the laminin A chain and internal repeats of EGF. Perlecan may participate in a variety of biological functions including cell binding, LDL-metabolism, basement membrane assembly and selective permeability, calcium binding, and growth- and neurite-promoting activities.
Probab=99.26 E-value=3.5e-11 Score=96.72 Aligned_cols=73 Identities=29% Similarity=0.490 Sum_probs=62.4
Q ss_pred CCeEEEEEeeccCCCCeeEEeeCCEEecCCCcEEEeec---CcEEEccccCCCCEEEEEEEEeCCceeeeeEEEEE
Q psy12060 603 GGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFEN---GNLLISPVSRDDSGIYSCTATNVHGMDESKGRLIV 675 (978)
Q Consensus 603 g~~~~l~C~~~~~p~~~i~W~~~g~~~~~~~~~~~~~~---~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v 675 (978)
|+++.|.|.+.|.|.|.+.|++++..+....++.+... +.|.|.++..+|+|.|+|.|.|..|.....+.+.+
T Consensus 1 G~~v~l~C~~~g~P~p~v~W~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~~~~ 76 (78)
T cd05743 1 GETVEFTCVATGVPTPIINWRLNWGHVPDSARVSITSEGGYGTLTIRDVKESDQGAYTCEAINTRGMVFGIPDGIL 76 (78)
T ss_pred CCEEEEEEEEEEecCCEEEEEECCeECCCCCCEEEEECCCEEEEEECCCChHHCEEEEEEEEecCCEEEecccEEE
Confidence 78999999999999999999999988877666655433 46999999999999999999999999887765543
No 144
>cd05850 Ig1_Contactin-2 First Ig domain of contactin-2. Ig1_Contactin-2: First Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c
Probab=99.26 E-value=8.2e-11 Score=98.25 Aligned_cols=83 Identities=29% Similarity=0.426 Sum_probs=63.9
Q ss_pred ceeeccCCcccccC---CCceeEEEEeecCCCCeeEEeECCEECCCCCCCCCCCCcEEEecCEEEEEeCCCCCCCeEEEE
Q psy12060 489 PNFTIPLTDKHMDN---QADLTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQDNVLTIRYLNPERDPAMYQC 565 (978)
Q Consensus 489 p~~~~~~~~~~~~~---g~~~~l~C~~~~~p~~~i~W~~~g~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~d~G~Y~C 565 (978)
|.|...|.+..+.+ |++++|.|.+.|.|.++|+|+++|..+... ...++.+..+.|.|.++....|+|.|+|
T Consensus 2 P~f~~~P~~~~~~~~~~g~~v~l~C~a~g~P~p~i~W~~~g~~l~~~-----~~~~~~~~~g~L~I~~~~~~~D~G~Y~C 76 (94)
T cd05850 2 PVFEEQPSSLLFPEGSPEEKVTLGCRARASPPATYRWKMNGTEIKFA-----PESRYTLVAGNLVINNPQKARDAGSYQC 76 (94)
T ss_pred CeeEECCCCEEecCCCCCCeEEEEeEceeCCCCEEEEEECCEECccC-----CCceEEEECCeEEEccCCccCcCEEEEE
Confidence 44555555555444 468999999999999999999999988632 2345666778899987653489999999
Q ss_pred EEEcCCCceee
Q psy12060 566 RAKNQLKTRYS 576 (978)
Q Consensus 566 ~a~n~~g~~~~ 576 (978)
.|+|..|...+
T Consensus 77 ~A~N~~G~~~s 87 (94)
T cd05850 77 LAINRCGTVVS 87 (94)
T ss_pred EEEcCcCcEEE
Confidence 99999997754
No 145
>PF07679 I-set: Immunoglobulin I-set domain; InterPro: IPR013098 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents I-set domains, which are found in several cell adhesion molecules, including vascular (VCAM), intercellular (ICAM), neural (NCAM) and mucosal addressin (MADCAM) cell adhesion molecules, as well as junction adhesion molecules (JAM). I-set domains are also present in several other diverse protein families, including several tyrosine-protein kinase receptors, the hemolymph protein hemolin, the muscle proteins titin, telokin, and twitchin, the neuronal adhesion molecule axonin-1 [], and the signalling molecule semaphorin 4D that is involved in axonal guidance, immune function and angiogenesis [].; PDB: 3MTR_A 2EDK_A 3DMK_B 1KOA_A 3NCM_A 2NCM_A 2V9Q_A 2CR3_A 3QQN_A 3QR2_A ....
Probab=99.25 E-value=4.8e-11 Score=99.91 Aligned_cols=80 Identities=34% Similarity=0.612 Sum_probs=71.1
Q ss_pred cceeecCCCeEEEEEeeccCCCCeeEEeeCCEEecCCCcEEEeecC---cEEEccccCCCCEEEEEEEEeCCceeeeeEE
Q psy12060 596 SETYAGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENG---NLLISPVSRDDSGIYSCTATNVHGMDESKGR 672 (978)
Q Consensus 596 ~~~~~~~g~~~~l~C~~~~~p~~~i~W~~~g~~~~~~~~~~~~~~~---~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~ 672 (978)
....+.+|+++.|.|.+.+.|.+.+.|+++|..+..+.++.+...+ +|.|.++..+|+|.|+|.|.|..|.....+.
T Consensus 8 ~~~~v~~G~~~~l~c~~~~~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~n~~g~~~~~~~ 87 (90)
T PF07679_consen 8 KDVTVKEGESVTLECEVSGNPPPTVTWYKNGRPLTSSQRYQIESDGGSSSLTIKNVTREDAGTYTCVASNSSGEATASVN 87 (90)
T ss_dssp SEEEEETTSEEEEEEEEEESSSSEEEEEETTEEEESSSSEEEEEETTEEEEEESSESGGGSEEEEEEEEETTEEEEEEEE
T ss_pred CCEEEeCCCEEEEEEEEEeCCCCcccccccccceeeeeeeeeecccceeEEccCCCChhhCEEEEEEEEECCCEEEEEEE
Confidence 4556889999999999999999999999999999988777765443 5999999999999999999999999998888
Q ss_pred EEE
Q psy12060 673 LIV 675 (978)
Q Consensus 673 l~v 675 (978)
|.|
T Consensus 88 l~V 90 (90)
T PF07679_consen 88 LTV 90 (90)
T ss_dssp EEE
T ss_pred EEC
Confidence 765
No 146
>cd05866 Ig1_NCAM-2 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2. Ig1_NCAM-2: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2 (OCAM/mamFas II, RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.
Probab=99.25 E-value=5.6e-11 Score=97.70 Aligned_cols=81 Identities=25% Similarity=0.470 Sum_probs=59.2
Q ss_pred CCCceEecCCCccccCcEEEEEEeecCCCCeEEEEEccc-ccccccccccCCCCCCceEe-ecc---eEEEeCCCCCCCC
Q psy12060 195 QPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDY-VQDRLVANLIDPLSDKRFTL-SGG---NLIINDPRQVEDR 269 (978)
Q Consensus 195 ~p~~~~~~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~~~-~~~~~~~~~~~~~~~~~~~~-~~~---~l~i~~~~~~~d~ 269 (978)
.|.+..+. +|+.+.|.|.+.|.|. .+.|+|+++ .+. . ..++.. .++ +|.|.++ +.+|+
T Consensus 6 ~~~~~~v~-----~G~~v~l~C~~~G~P~-~v~W~k~~g~~~~--------~--~~r~~~~~~g~~~~L~I~~v-~~~D~ 68 (92)
T cd05866 6 SLSKVELS-----VGESKFFTCTAIGEPE-SIDWYNPQGEKIV--------S--SQRVVVQKEGVRSRLTIYNA-NIEDA 68 (92)
T ss_pred EecceEEc-----CCCeEEEEEEEEEeCC-eEEEEeCCCeEec--------C--CCCEEEEeCCCeeEEEEecC-ChHHC
Confidence 34555543 4667999999999998 999998643 221 1 223333 233 7999998 89999
Q ss_pred eEEEEEEEeCceeEEeEEEEEEE
Q psy12060 270 GSYHCKASNKFGSIISESVQLAF 292 (978)
Q Consensus 270 G~Y~C~a~n~~g~~~s~~~~l~v 292 (978)
|.|+|.|+|..|.....++.|.+
T Consensus 69 G~Y~C~A~N~~G~~~~~~i~l~~ 91 (92)
T cd05866 69 GIYRCQATDAKGQTQEATVVLEI 91 (92)
T ss_pred EEEEEEEEcCCCcEEEEEEEEEE
Confidence 99999999999987666666654
No 147
>cd05725 Ig3_Robo Third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Ig3_Robo: domain similar to the third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni
Probab=99.25 E-value=2.8e-11 Score=94.81 Aligned_cols=69 Identities=32% Similarity=0.630 Sum_probs=59.7
Q ss_pred EEEEEeeccCCCCeeEEeeCCEEecCCCcEEEeecCcEEEccccCCCCEEEEEEEEeCCceeeeeEEEEE
Q psy12060 606 VTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTATNVHGMDESKGRLIV 675 (978)
Q Consensus 606 ~~l~C~~~~~p~~~i~W~~~g~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v 675 (978)
++|.|.+.|.|+|.+.|+|++..+.. .+......++|.|.+++.+|+|.|+|.|.|..|.....+.|.|
T Consensus 1 v~l~C~~~g~P~p~v~W~k~~~~~~~-~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V 69 (69)
T cd05725 1 VEFQCEVGGDPVPTVLWRKEDGELPK-GRAEILDDKSLKIRNVTAGDEGSYTCEAENMVGKIEASASLTV 69 (69)
T ss_pred CEEEEECccCCCCEEEEEECCccCCC-CcEEEeeCCEEEECcCChhHCEEEEEEEEcCCCcEEEEEEEEC
Confidence 47999999999999999999877654 3455567778999999999999999999999999988887764
No 148
>cd05891 Ig_M-protein_C C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2). Ig_M-protein_C: the C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2). M-protein is a structural protein localized to the M-band, a transverse structure in the center of the sarcomere, and is a candidate for M-band bridges. M-protein is modular consisting mainly of repetitive IG-like and fibronectin type III (FnIII) domains, and has a muscle-type specific expression pattern. M-protein is present in fast fibers.
Probab=99.25 E-value=6.4e-11 Score=98.42 Aligned_cols=80 Identities=25% Similarity=0.370 Sum_probs=67.4
Q ss_pred cceeecCCCeEEEEEeeccCCCCeeEEeeCCEEecCCCcEEEe-ec---CcEEEccccCCCCEEEEEEEEeCCceeeeeE
Q psy12060 596 SETYAGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIF-EN---GNLLISPVSRDDSGIYSCTATNVHGMDESKG 671 (978)
Q Consensus 596 ~~~~~~~g~~~~l~C~~~~~p~~~i~W~~~g~~~~~~~~~~~~-~~---~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~ 671 (978)
..+.+.+|+.+.|.|.+.|.|.|.+.|++++..+..+.++.+. .. .+|.|.+++.+|+|.|+|.|.|..|.....+
T Consensus 9 ~~v~v~eG~~v~L~C~v~g~P~p~i~W~k~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~ 88 (92)
T cd05891 9 DVVTIMEGKTLNLTCTVFGNPDPEVIWFKNDQDIELSEHYSVKLEQGKYASLTIKGVTSEDSGKYSINVKNKYGGETVDV 88 (92)
T ss_pred CcEEEcCCCEEEEEEEEEEeCCCeEEEEECCEECCCCCCEEEEEcCCCEEEEEECCCChhhCEEEEEEEEeCCCceeeEE
Confidence 4556889999999999999999999999999988776654432 12 2699999999999999999999999998887
Q ss_pred EEEE
Q psy12060 672 RLIV 675 (978)
Q Consensus 672 ~l~v 675 (978)
.|.|
T Consensus 89 ~v~~ 92 (92)
T cd05891 89 TVSV 92 (92)
T ss_pred EEEC
Confidence 7654
No 149
>cd05857 Ig2_FGFR Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. Ig2_FGFR: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three IG-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin sulfate proteoglycans.
Probab=99.25 E-value=5.1e-11 Score=98.21 Aligned_cols=77 Identities=25% Similarity=0.408 Sum_probs=64.8
Q ss_pred eecCCCeEEEEEeeccCCCCeeEEeeCCEEecCCCcE---EE-eecCcEEEccccCCCCEEEEEEEEeCCceeeeeEEEE
Q psy12060 599 YAGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRR---KI-FENGNLLISPVSRDDSGIYSCTATNVHGMDESKGRLI 674 (978)
Q Consensus 599 ~~~~g~~~~l~C~~~~~p~~~i~W~~~g~~~~~~~~~---~~-~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~ 674 (978)
.+.+|+.+.|.|.+.|.|.|.+.|+|+|..+..+.+. .. ....+|.|.++..+|+|.|+|.|.|..|....++.|.
T Consensus 5 ~v~~G~~~~L~C~~~g~P~p~i~W~k~g~~l~~~~~~~~~~~~~~~~~l~i~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~ 84 (85)
T cd05857 5 AVPAANTVKFRCPAAGNPTPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINHTYHLD 84 (85)
T ss_pred EcCCCCEEEEEEEcCCCCCCEEEEEECCEECCCCCceeeeEEeCCceEEEEccCCcccCEEEEEEEEeCCCEEEEEEEEE
Confidence 3678999999999999999999999999998765432 11 1234699999999999999999999999998888776
Q ss_pred E
Q psy12060 675 V 675 (978)
Q Consensus 675 v 675 (978)
|
T Consensus 85 v 85 (85)
T cd05857 85 V 85 (85)
T ss_pred C
Confidence 4
No 150
>cd05866 Ig1_NCAM-2 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2. Ig1_NCAM-2: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2 (OCAM/mamFas II, RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.
Probab=99.25 E-value=6e-11 Score=97.52 Aligned_cols=78 Identities=26% Similarity=0.440 Sum_probs=64.3
Q ss_pred ceeecCCCeEEEEEeeccCCCCeeEEee-CCEEecCCCcEEEeecC---cEEEccccCCCCEEEEEEEEeCCceee-eeE
Q psy12060 597 ETYAGEGGNVTIFCNPEAAPKPKFVWKK-DGNIIGSGGRRKIFENG---NLLISPVSRDDSGIYSCTATNVHGMDE-SKG 671 (978)
Q Consensus 597 ~~~~~~g~~~~l~C~~~~~p~~~i~W~~-~g~~~~~~~~~~~~~~~---~l~i~~~~~~d~G~Y~C~a~n~~g~~~-~~~ 671 (978)
...+..|+++.|.|.+.|.|. .+.|++ ++..+..+.++.+..++ +|.|.++..+|+|.|+|.|.|..|... ++.
T Consensus 9 ~~~v~~G~~v~l~C~~~G~P~-~v~W~k~~g~~~~~~~r~~~~~~g~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~i 87 (92)
T cd05866 9 KVELSVGESKFFTCTAIGEPE-SIDWYNPQGEKIVSSQRVVVQKEGVRSRLTIYNANIEDAGIYRCQATDAKGQTQEATV 87 (92)
T ss_pred ceEEcCCCeEEEEEEEEEeCC-eEEEEeCCCeEecCCCCEEEEeCCCeeEEEEecCChHHCEEEEEEEEcCCCcEEEEEE
Confidence 345789999999999999998 999997 57777777777776666 699999999999999999999999864 344
Q ss_pred EEEE
Q psy12060 672 RLIV 675 (978)
Q Consensus 672 ~l~v 675 (978)
.|.+
T Consensus 88 ~l~~ 91 (92)
T cd05866 88 VLEI 91 (92)
T ss_pred EEEE
Confidence 5443
No 151
>cd05848 Ig1_Contactin-5 First Ig domain of contactin-5. Ig1_Contactin-5: First Ig domain of the neural cell adhesion molecule contactin-5. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains, anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. In rats, a lack of contactin-5 (NB-2) results in an impairment of the neuronal activity in the auditory system. Contactin-5 is expressed specifically in the postnatal nervous system, peaking at about 3 weeks postnatal. Contactin-5 is highly expressed in the adult human brain in the occipital lobe and in the amygdala; lower levels of expression have been detected in the corpus callosum, caudate nucleus, and spinal cord.
Probab=99.25 E-value=8e-11 Score=98.20 Aligned_cols=83 Identities=33% Similarity=0.546 Sum_probs=63.7
Q ss_pred ceeeccCCccccc---CCCceeEEEEeecCCCCeeEEeECCEECCCCCCCCCCCCcEEEecCEEEEEeCCCCCCCeEEEE
Q psy12060 489 PNFTIPLTDKHMD---NQADLTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQDNVLTIRYLNPERDPAMYQC 565 (978)
Q Consensus 489 p~~~~~~~~~~~~---~g~~~~l~C~~~~~p~~~i~W~~~g~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~d~G~Y~C 565 (978)
|.|...+.+..+. +|++++|.|.+.|.|.|+|+|+|+|..+... ...++...++.|.|.++...+|+|.|+|
T Consensus 2 P~f~~~p~~~~~~~~~~g~~v~l~C~~~G~P~P~i~W~k~g~~l~~~-----~~~~~~~~~g~L~i~~~~~~~D~G~Y~C 76 (94)
T cd05848 2 PVFVQEPDDAIFPTDSDEKKVILNCEARGNPVPTYRWLRNGTEIDTE-----SDYRYSLIDGNLIISNPSEVKDSGRYQC 76 (94)
T ss_pred CeeEECCCcEEccCCCCCCEEEEEEEeeecCCCEEEEEECCeECccC-----CCceEEeeCCeEEEccCCccCcCEEEEE
Confidence 4455555554433 5789999999999999999999999988632 2235556678899988743389999999
Q ss_pred EEEcCCCceee
Q psy12060 566 RAKNQLKTRYS 576 (978)
Q Consensus 566 ~a~n~~g~~~~ 576 (978)
.|.|..|...+
T Consensus 77 ~A~N~~G~~~S 87 (94)
T cd05848 77 LATNSIGSILS 87 (94)
T ss_pred EEEcCCCeEEe
Confidence 99999997644
No 152
>cd05756 Ig1_IL1R_like First immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins. Ig1_IL1R_like: domain similar to the first immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.
Probab=99.24 E-value=2.2e-11 Score=100.97 Aligned_cols=76 Identities=20% Similarity=0.401 Sum_probs=63.6
Q ss_pred CCCCCCcEEEEEEEee-----cCCCeeEEEEcCccCCC----CceeeecccEEEeCCCCCCCCeEEEEEEEeCCCceEEE
Q psy12060 410 APKAGDKVRLECVAFG-----YPVPSYNWTRRGSPLPR----NAYFENFNRILTIPNVKVEDQGEYICRASNDRSALESS 480 (978)
Q Consensus 410 ~v~~G~~~~l~C~~~g-----~p~~~v~W~~~~~~l~~----~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~ 480 (978)
.+.+|+.+.|.|.+.| .|.+.|.|||++..+.. ..++...+..|.|.++..+|+|.|+|.++|..|..+..
T Consensus 10 ~v~~G~~~~L~C~~~g~~~~~~p~~~v~Wyk~~~~~~~~~~~~~r~~~~~~~L~I~~~~~~DsG~Y~C~~~N~~g~~~~~ 89 (94)
T cd05756 10 YVLEGEPVVIKCPLFYSYIAQSPGLNLTWYKSDGKTPIPTEERSRMHQQKDLLWFLPAALEDSGLYTCVVRNSTYCMKVS 89 (94)
T ss_pred EEecCCCeEEECCCCCcccccCCCceEEEEEcCCCCcccccccceeeecCCeEEEccCCcccCeEEEEEEcCCCccEEEE
Confidence 4568999999999998 68889999999977532 23333346789999999999999999999999999888
Q ss_pred EEEEE
Q psy12060 481 VTISI 485 (978)
Q Consensus 481 ~~l~V 485 (978)
+.|.|
T Consensus 90 ~~L~v 94 (94)
T cd05756 90 ISLTV 94 (94)
T ss_pred EEEEC
Confidence 88765
No 153
>cd05869 Ig5_NCAM-1 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). Ig5_NCAM-1: The fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM) and heterophilic (NCAM-non-NCAM) interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (tr
Probab=99.24 E-value=7.3e-11 Score=99.61 Aligned_cols=92 Identities=26% Similarity=0.412 Sum_probs=69.8
Q ss_pred eceeeccCCcccccCCCceeEEEEeecCCCCeeEEeECCEECCCCCCCCCCCCcEEEe----cCEEEEEeCCCCCCCeEE
Q psy12060 488 EPNFTIPLTDKHMDNQADLTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQ----DNVLTIRYLNPERDPAMY 563 (978)
Q Consensus 488 ~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~i~W~~~g~~~~~~~~~~~~~~~~~~~----~~~l~i~~~~~~~d~G~Y 563 (978)
+|.|...+....+..|++++|.|.+.|.|.|.++|++++..+...... ...++.+. .+.|.|.++.. +|+|.|
T Consensus 2 ~p~i~~~~~~~~~~~g~~v~l~C~~~G~P~P~v~W~~~~~~~~~~~~~--~~~~~~v~~~~~~~~L~I~~v~~-~D~G~Y 78 (97)
T cd05869 2 KPKITYVENQTAMELEEQITLTCEASGDPIPSITWRTSTRNISSEEKT--LDGHIVVRSHARVSSLTLKYIQY-TDAGEY 78 (97)
T ss_pred CceEEEccCceEEEcCCCEEEEEEeeEeCCCEEEEEECCccccCCccc--cCccEEEEcCccEEEEEEecCcc-CcCEEE
Confidence 466666665555667899999999999999999999998876532111 12233322 24799999986 999999
Q ss_pred EEEEEcCCCceeeEEEEEE
Q psy12060 564 QCRAKNQLKTRYSSAQLRV 582 (978)
Q Consensus 564 ~C~a~n~~g~~~~~~~l~v 582 (978)
+|.|.|..|....+..|.|
T Consensus 79 ~C~A~N~~G~~~~~~~l~v 97 (97)
T cd05869 79 LCTASNTIGQDSQSMYLEV 97 (97)
T ss_pred EEEEecCCCCeeEEEEEEC
Confidence 9999999999888877754
No 154
>cd05764 Ig_2 Subgroup of the immunoglobulin (Ig) superfamily. Ig_2: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=99.24 E-value=3.4e-11 Score=96.02 Aligned_cols=72 Identities=29% Similarity=0.498 Sum_probs=60.0
Q ss_pred CCcEEEEEEEeecCCCeeEEEE-cCccCCCCcee-eecccEEEeCCCCCCCCeEEEEEEEeCCCceEEEEEEEE
Q psy12060 414 GDKVRLECVAFGYPVPSYNWTR-RGSPLPRNAYF-ENFNRILTIPNVKVEDQGEYICRASNDRSALESSVTISI 485 (978)
Q Consensus 414 G~~~~l~C~~~g~p~~~v~W~~-~~~~l~~~~~~-~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V 485 (978)
|+.+.|.|.+.|.|.|.+.|++ ++..+....+. ....++|.|.++..+|+|.|+|.|.|..|..+.++.|.|
T Consensus 1 G~~~~l~C~~~g~P~p~v~W~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~v 74 (74)
T cd05764 1 GQRATLRCKARGDPEPAIHWISPDGKLISNSSRTLVYDNGTLDILITTVKDTGSFTCIASNAAGEATATVELHI 74 (74)
T ss_pred CCeEEEEEEccCcCCCEEEEEeCCCEEecCCCeEEEecCCEEEEEECChhhCEEEEEEEECCCCeEEEEEEEEC
Confidence 7899999999999999999997 56555544332 234578999999999999999999999999988888765
No 155
>cd05738 Ig2_RPTP_IIa_LAR_like Second immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. Ig2_RPTP_IIa_LAR_like: domain similar to the second immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple Ig-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains.
Probab=99.24 E-value=3.8e-11 Score=95.25 Aligned_cols=70 Identities=34% Similarity=0.601 Sum_probs=59.5
Q ss_pred EEEEEeeccCCCCeeEEeeCCEEec--CCCcEEEeecCcEEEccccCCCCEEEEEEEEeCCcee-eeeEEEEE
Q psy12060 606 VTIFCNPEAAPKPKFVWKKDGNIIG--SGGRRKIFENGNLLISPVSRDDSGIYSCTATNVHGMD-ESKGRLIV 675 (978)
Q Consensus 606 ~~l~C~~~~~p~~~i~W~~~g~~~~--~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~-~~~~~l~v 675 (978)
++|.|.+.|.|.|.|+|+|++..+. ...++....++.|.|.+++.+|+|.|+|.|.|..|.. +..+.|.|
T Consensus 1 a~l~C~~~G~P~p~v~W~k~~~~~~~~~~~~~~~~~~g~L~i~~~~~~D~G~Y~C~a~N~~G~~~s~~a~l~v 73 (74)
T cd05738 1 ATMLCAASGNPDPEITWFKDFLPVDTTSNGRIKQLRSGALQIENSEESDQGKYECVATNSAGTRYSAPANLYV 73 (74)
T ss_pred CEEEEEEeEecCCEEEEEECCEECccCCCCCEEEcCCcEEEECCCChhhCEEEEEEEECCCCceEcccEEEEE
Confidence 4799999999999999999999887 4456666677889999999999999999999999985 44566655
No 156
>cd05739 Ig3_RPTP_IIa_LAR_like Third immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. Ig3_RPTP_IIa_LAR_like: domain similar to the third immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple IG-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains. Included in this group is Drosophila LAR (DLAR).
Probab=99.24 E-value=5.7e-11 Score=92.16 Aligned_cols=68 Identities=26% Similarity=0.515 Sum_probs=56.5
Q ss_pred CCeEEEEEeeccCCCCeeEEeeCCEEecCCCcEEEeecCcEEEccccCCCCEEEEEEEEeCCceeeeeEEE
Q psy12060 603 GGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTATNVHGMDESKGRL 673 (978)
Q Consensus 603 g~~~~l~C~~~~~p~~~i~W~~~g~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l 673 (978)
|++++|.|.+.|.|.|.|+|+|+|..+....+... ....|.|.++. |+|.|+|.|.|..|...+++.|
T Consensus 1 G~~v~L~C~a~G~P~P~v~W~k~g~~l~~~~~~~~-~~~~L~i~~~~--d~G~Y~C~A~N~~G~~~~~a~l 68 (69)
T cd05739 1 GGSVNLTCVAVGAPMPYVKWMKGGEELTKEDEMPV-GRNVLELTNIY--ESANYTCVAISSLGMIEATAQV 68 (69)
T ss_pred CCeEEEEEEeeecCCCEEEEEECCEECCCccceec-CccEEEEeccc--cCeeEEEEEEeCCCEEEEEEEE
Confidence 67899999999999999999999998866554332 33468888874 7999999999999998887765
No 157
>cd05763 Ig_1 Subgroup of the immunoglobulin (Ig) superfamily. Ig_1: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=99.24 E-value=3.5e-11 Score=96.11 Aligned_cols=69 Identities=32% Similarity=0.643 Sum_probs=56.8
Q ss_pred EEEEEEEeecCCCeeEEEEcCccC-CC--Cce--eeecccEEEeCCCCCCCCeEEEEEEEeCCCceEEEEEEEE
Q psy12060 417 VRLECVAFGYPVPSYNWTRRGSPL-PR--NAY--FENFNRILTIPNVKVEDQGEYICRASNDRSALESSVTISI 485 (978)
Q Consensus 417 ~~l~C~~~g~p~~~v~W~~~~~~l-~~--~~~--~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V 485 (978)
++|.|.+.|.|.|+|+|+|++... +. ..+ ....+..|.|.+++.+|+|.|+|.|.|..|..+..+.|.|
T Consensus 1 a~l~C~~~G~P~P~v~W~k~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~A~N~~G~~~~~~~l~V 74 (75)
T cd05763 1 ARLECAATGHPTPQIAWQKDGGTDFPAARERRMHVMPEDDVFFIVDVKIEDTGVYSCTAQNTAGSISANATLTV 74 (75)
T ss_pred CEeEeecccccCCEEEEEeCCCccCCcccccceEEecCCCEEEEeeCCcccCEEEEEEEEcCCCEEEeeEEEEE
Confidence 479999999999999999998642 21 112 2234568999999999999999999999999999988887
No 158
>cd05734 Ig7_DSCAM Seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM). Ig7_DSCAM: the seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.
Probab=99.24 E-value=2.4e-11 Score=98.13 Aligned_cols=78 Identities=35% Similarity=0.515 Sum_probs=56.8
Q ss_pred EEEEEEeecCCCCeEEEEEcccccccccccccCCCCCCceE-eecceEEEeCCCCCCCCeEEEEEEEeCceeEEeEEEEE
Q psy12060 212 ITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFT-LSGGNLIINDPRQVEDRGSYHCKASNKFGSIISESVQL 290 (978)
Q Consensus 212 ~~l~C~~~g~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~i~~~~~~~d~G~Y~C~a~n~~g~~~s~~~~l 290 (978)
++|.|.+.|.|.|.+.|+|++....... ... .....++. ..+++|.|.++ +.+|+|.|+|.|.|..|...+..+.|
T Consensus 1 v~l~C~~~G~P~P~v~W~~~~~~~~~~~-~~~-~~~~~r~~~~~~~~L~I~~v-~~~D~G~Y~C~a~N~~G~~~s~~~~l 77 (79)
T cd05734 1 VTLNCSAEGYPPPTIVWKHSKGRGHPQH-THT-CCLAGRIQLLSNGSLLIKHV-LEEDSGYYLCKVSNDVGADASKSMVL 77 (79)
T ss_pred CEeEeeCeEeCCCEEEEEECCCcccccc-ccc-cccCCCEEEecCCeEEECcC-CcccCEEEEEEEEeCCCCCCceEEEE
Confidence 4899999999999999999754221100 000 01223443 35689999997 89999999999999999887777777
Q ss_pred EE
Q psy12060 291 AF 292 (978)
Q Consensus 291 ~v 292 (978)
+|
T Consensus 78 ~~ 79 (79)
T cd05734 78 TV 79 (79)
T ss_pred eC
Confidence 54
No 159
>cd05855 Ig_TrkB_d5 Fifth domain (immunoglobulin-like) of Trk receptor TrkB. TrkB_d5: the fifth domain of Trk receptor TrkB, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors, which mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. The Trks are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkB shares significant sequence homology and domain organization with TrkA, and TrkC. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. In some cell systems NT-3 can activate TrkA and TrkB receptors. TrKB transcripts are found throughout multiple structures of the central and peripheral nervous systems.
Probab=99.24 E-value=3.7e-11 Score=94.66 Aligned_cols=67 Identities=25% Similarity=0.347 Sum_probs=55.8
Q ss_pred EEEeeccCCCCeeEEeeCCEEecCCCcEEE--------eecCcEEEccccCCCCEEEEEEEEeCCceeeeeEEEE
Q psy12060 608 IFCNPEAAPKPKFVWKKDGNIIGSGGRRKI--------FENGNLLISPVSRDDSGIYSCTATNVHGMDESKGRLI 674 (978)
Q Consensus 608 l~C~~~~~p~~~i~W~~~g~~~~~~~~~~~--------~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~ 674 (978)
|.|.+.|.|.|+|+|+|+|..|..+.+... ...+.|.|.++..+|+|.|+|.|.|..|....++.+.
T Consensus 3 i~~~v~G~P~Pti~W~kng~~l~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~YtC~A~N~~G~~~~~~~~~ 77 (79)
T cd05855 3 IPFTVKGNPKPTLQWFHEGAILNESEYICTKIHVINNTEYHGCLQLDNPTHLNNGIYTLVAKNEYGEDEKNVSAH 77 (79)
T ss_pred EEEEEeEeCCCceEEEECCEECCCCcceeeeeEeecccceEEEEEECCCCcccCEEEEEEEEcCCcccceEEEee
Confidence 679999999999999999999987654321 1234699999999999999999999999988776553
No 160
>cd05773 Ig8_hNephrin_like Eighth immunoglobulin-like domain of nephrin. Ig8_hNephrin_like: domain similar to the eighth immunoglobulin-like domain in human nephrin. Nephrin is an integral component of the slit diaphragm, and is a central component of the glomerular ultrafilter. Nephrin plays a structural role, and has a role in signaling. Nephrin is a transmembrane protein having a short intracellular portion, and an extracellular portion comprised of eight Ig-like domains, and one fibronectin type III-like domain. The extracellular portions of nephrin, from neighboring foot processes of separate podocyte cells, may interact with each other, and in association with other components of the slit diaphragm, form a porous molecular sieve within the slit pore. The intracellular portion of nephrin is associated with linker proteins, which connect nephrin to the actin cytoskeleton. The intracellular portion is tyrosine phosphorylated, and mediates signaling from the slit diaphragm into the p
Probab=99.23 E-value=4.7e-11 Score=102.58 Aligned_cols=77 Identities=27% Similarity=0.483 Sum_probs=64.9
Q ss_pred CCCcEEEEEEEeecCCCeeEEEEcCccCCCC-ceee--------ecccEEEeCCCC-CCCCeEEEEEEEeCCCceEEEEE
Q psy12060 413 AGDKVRLECVAFGYPVPSYNWTRRGSPLPRN-AYFE--------NFNRILTIPNVK-VEDQGEYICRASNDRSALESSVT 482 (978)
Q Consensus 413 ~G~~~~l~C~~~g~p~~~v~W~~~~~~l~~~-~~~~--------~~~~~L~i~~~~-~~d~G~Y~C~a~n~~g~~~~~~~ 482 (978)
.|..++|.|.+.|.|.+.+.|+|++..+... .++. ...++|.|.++. .+|.|.|+|.|.|..|.....+.
T Consensus 22 ~g~~v~L~C~a~G~P~p~i~W~k~g~~l~~~~~r~~~~~~~~~~~~~s~L~I~~v~~~~D~G~Y~C~A~N~~G~~~~~i~ 101 (109)
T cd05773 22 GSSDANLVCQAQGVPRVQFRWAKNGVPLDLGNPRYEETTEHTGTVHTSILTIINVSAALDYALFTCTAHNSLGEDSLDIQ 101 (109)
T ss_pred CCCEEEEEEECcccCCCEEEEEECCEECCCCCCeEEEEeeccCccceeEEEECcCCccCCCEEEEEEEEeCCccCcEEEE
Confidence 5789999999999999999999999988632 2221 113579999997 59999999999999999999999
Q ss_pred EEEEeec
Q psy12060 483 ISIQAEP 489 (978)
Q Consensus 483 l~V~~~p 489 (978)
|.|..+|
T Consensus 102 L~~~~~p 108 (109)
T cd05773 102 LVSTSRP 108 (109)
T ss_pred EEecCCC
Confidence 9998776
No 161
>cd04974 Ig3_FGFR Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Ig3_FGFR: third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs.
Probab=99.23 E-value=2.9e-11 Score=100.22 Aligned_cols=73 Identities=26% Similarity=0.517 Sum_probs=58.0
Q ss_pred CCcEEEEEEEeecCCCeeEEEEcC----ccCCCC--ce-----------eeecccEEEeCCCCCCCCeEEEEEEEeCCCc
Q psy12060 414 GDKVRLECVAFGYPVPSYNWTRRG----SPLPRN--AY-----------FENFNRILTIPNVKVEDQGEYICRASNDRSA 476 (978)
Q Consensus 414 G~~~~l~C~~~g~p~~~v~W~~~~----~~l~~~--~~-----------~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~ 476 (978)
|+.++|.|.+.|.|.|.|+|+|++ ..+... .. ......+|.|.+++.+|+|.|+|.|.|..|.
T Consensus 1 G~~v~l~C~v~g~P~P~i~W~k~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~ 80 (90)
T cd04974 1 GSDVEFHCKVYSDAQPHIQWLKHVEVNGSKYGPDGLPYVTVLKVAGINTTDNESEVLYLRNVSFDDAGEYTCLAGNSIGP 80 (90)
T ss_pred CCcEEEEEEEeCCCCCeEEEEEecccCCceeCCCCCceEEEEEecCCcccccccceEEEeccccccCcEEEEEeecccCc
Confidence 688999999999999999999964 222111 00 0112357999999999999999999999999
Q ss_pred eEEEEEEEEE
Q psy12060 477 LESSVTISIQ 486 (978)
Q Consensus 477 ~~~~~~l~V~ 486 (978)
..+++.|.|.
T Consensus 81 ~~~sa~L~V~ 90 (90)
T cd04974 81 SHHSAWLTVL 90 (90)
T ss_pred ccCCEEEEeC
Confidence 9999998873
No 162
>cd04973 Ig1_FGFR First immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Ig1_FGFR: The first immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for all FGFs.
Probab=99.23 E-value=6e-11 Score=95.48 Aligned_cols=76 Identities=25% Similarity=0.441 Sum_probs=64.1
Q ss_pred eeecCCCeEEEEEeeccCCCCeeEEeeCCEEecCCCcEEEeecCcEEEccccCCCCEEEEEEEEeCCceeeeeEEEEE
Q psy12060 598 TYAGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTATNVHGMDESKGRLIV 675 (978)
Q Consensus 598 ~~~~~g~~~~l~C~~~~~p~~~i~W~~~g~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v 675 (978)
..+.+|+.+.|.|.+.+. .+.+.|+|+|.++..+.+..+ ..++|.|.++..+|+|.|+|.|.|..|.....+.|.|
T Consensus 4 ~~~~~G~~v~l~C~~~~~-~~~v~W~k~g~~l~~~~~~~~-~~~~L~I~~~~~~DsG~Y~C~a~n~~g~~~~~~~v~V 79 (79)
T cd04973 4 YSAHPGDLLQLRCRLRDD-VQSINWTKDGVQLGENNRTRI-TGEEVQIKDAVPRDSGLYACVTSSPSGSDTTYFSVNV 79 (79)
T ss_pred EEecCCCCEEEEEEecCC-CceEEEeeCCcCCCCCceEEE-eCCEEEECCCChhhCEEEEEEEeCCCCcccEEEEEeC
Confidence 447899999999999986 568999999999987766655 3567999999999999999999999988777665543
No 163
>cd05849 Ig1_Contactin-1 First Ig domain of contactin-1. Ig1_Contactin-1: First Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may, through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.
Probab=99.21 E-value=1.2e-10 Score=96.52 Aligned_cols=82 Identities=23% Similarity=0.344 Sum_probs=62.7
Q ss_pred ceeeccCCcccccC---CCceeEEEEeecCCCCeeEEeECCEECCCCCCCCCCCCcEEEecCEEEEEeCCCCCCCeEEEE
Q psy12060 489 PNFTIPLTDKHMDN---QADLTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQDNVLTIRYLNPERDPAMYQC 565 (978)
Q Consensus 489 p~~~~~~~~~~~~~---g~~~~l~C~~~~~p~~~i~W~~~g~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~d~G~Y~C 565 (978)
|.|...|.+..+.+ |+.+.|.|.+.|.|.|+|+|+|++..+.. ...++.+.++.|.|.++...+|+|.|+|
T Consensus 2 P~f~~~P~~~~~~~~~~~~~v~l~C~a~G~P~P~i~W~k~~~~i~~------~~~~~~~~~g~L~I~~~~~~~D~G~Y~C 75 (93)
T cd05849 2 PVFEEQPIDTIYPEESTEGKVSVNCRARANPFPIYKWRKNNLDIDL------TNDRYSMVGGNLVINNPDKYKDAGRYVC 75 (93)
T ss_pred CEEEECCCCEEecCCccCCeEEEeCcCccCCCCEEEEEECCEEccC------CCCeEEEECCEEEECcCCcCCCCEEEEE
Confidence 44555555544433 45799999999999999999999998752 2345666788999988753389999999
Q ss_pred EEEcCCCceee
Q psy12060 566 RAKNQLKTRYS 576 (978)
Q Consensus 566 ~a~n~~g~~~~ 576 (978)
.|.|..|...+
T Consensus 76 ~A~N~~G~~~s 86 (93)
T cd05849 76 IVSNIYGKVRS 86 (93)
T ss_pred EEEeCcceEEE
Confidence 99999997644
No 164
>cd05749 Ig2_Tyro3_like Second immunoglobulin (Ig)-like domain of Axl/Tyro3 receptor tyrosine kinases (RTKs). Ig2_Tyro3_like: the second immunoglobulin (Ig)-like domain in the Axl/Tyro3 family of receptor tyrosine kinases (RTKs). This family includes Axl (also known as Ark, Ufo, and Tyro7), Tyro3 (also known as Sky, Rse, Brt, Dtk, and Tif), and Mer (also known as Nyk, c-Eyk, and Tyro12). Axl/Tyro3 family receptors have an extracellular portion with two Ig-like domains followed by two fibronectin-types III (FNIII) domains, a membrane-spanning single helix, and a cytoplasmic tyrosine kinase domain. Axl, Tyro3 and Mer are widely expressed in adult tissues, though they show higher expression in the brain, in the lymphatic and vascular systems, and in the testis. Axl, Tyro3, and Mer bind the vitamin K dependent protein Gas6 with high affinity, and in doing so activate their tyrosine kinase activity. Axl/Gas6 signaling may play a part in cell adhesion processes, prevention of apoptosis, and c
Probab=99.21 E-value=7.5e-11 Score=94.22 Aligned_cols=71 Identities=27% Similarity=0.487 Sum_probs=57.1
Q ss_pred CCCCCCCcEEEEEEEeecCCC-eeEEEEcCccCCCCceeeecccEEEeCCCCCCCCeEEEEEEEeCCCceEE-EEEE
Q psy12060 409 EAPKAGDKVRLECVAFGYPVP-SYNWTRRGSPLPRNAYFENFNRILTIPNVKVEDQGEYICRASNDRSALES-SVTI 483 (978)
Q Consensus 409 ~~v~~G~~~~l~C~~~g~p~~-~v~W~~~~~~l~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~-~~~l 483 (978)
..+.+|+++.|.|.+.|.|.| +|.|+|+|.++... .....+.|.|..+ .|+|.|.|.|+|..|...+ .++|
T Consensus 8 ~~v~~G~~v~l~C~a~G~P~P~~I~W~k~g~~l~~~--~~~~~s~L~i~~~--~d~g~Y~C~A~N~~G~~~s~~a~~ 80 (81)
T cd05749 8 LSVTANTPFNLTCQAVGPPEPVEILWWQGGSPLGDP--PAPSPSVLNVPGL--NETSKFSCEAHNAKGVTTSRTGTV 80 (81)
T ss_pred eEEcCCCCEEEEEEeeeecCCeEEEEEECCEECCCC--CCCCCCEEEEccc--cCCeEEEEEEEeccCcEEeeeEEe
Confidence 456799999999999999999 79999999998641 2233568999887 4789999999999997553 4443
No 165
>cd05731 Ig3_L1-CAM_like Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). Ig3_L1-CAM_like: domain similar to the third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM and human neurofascin.
Probab=99.21 E-value=5.5e-11 Score=94.14 Aligned_cols=70 Identities=30% Similarity=0.442 Sum_probs=58.5
Q ss_pred EEEEEeeccCCCCeeEEeeCCEEecCCCcEEEeecCcEEEccccCCCCEEEEEEEEeCCceeeeeEEEEE
Q psy12060 606 VTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTATNVHGMDESKGRLIV 675 (978)
Q Consensus 606 ~~l~C~~~~~p~~~i~W~~~g~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v 675 (978)
+.|.|.+.|.|.|.+.|++++..+...........+.|.|.++..+|+|.|+|.|.|..|.....+.|.|
T Consensus 1 v~l~C~~~g~P~p~v~W~k~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V 70 (71)
T cd05731 1 LLLECIAEGLPTPEISWIKIGGELPADRTKFENFNKTLKIDNVSEEDDGEYRCTASNSLGSARHTISVTV 70 (71)
T ss_pred CEEEEEeeEecCCeEEEEECCeECCCCceeEecCCCEEEECCCCHHHCEEEEEEEEeCCceEEEEEEEEE
Confidence 4799999999999999999998776543222233457999999999999999999999999888887766
No 166
>cd05724 Ig2_Robo Second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Ig2_Robo: domain similar to the second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antago
Probab=99.20 E-value=1.4e-10 Score=95.91 Aligned_cols=78 Identities=38% Similarity=0.730 Sum_probs=65.2
Q ss_pred cceeecCCCeEEEEEee-ccCCCCeeEEeeCCEEecC-CCcEEEeecCcEEEccccCCCCEEEEEEEEeCCceeeee-EE
Q psy12060 596 SETYAGEGGNVTIFCNP-EAAPKPKFVWKKDGNIIGS-GGRRKIFENGNLLISPVSRDDSGIYSCTATNVHGMDESK-GR 672 (978)
Q Consensus 596 ~~~~~~~g~~~~l~C~~-~~~p~~~i~W~~~g~~~~~-~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~-~~ 672 (978)
....+.+|+++.|.|.+ .|.|.|.+.|+++|..+.. ..+..+..+++|.|.+++.+|+|.|+|.|.|..|...+. +.
T Consensus 4 ~~~~~~~G~~v~l~C~~~~g~p~p~i~W~k~g~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~s~~~~ 83 (86)
T cd05724 4 SDTQVAVGEMAVLECSPPRGHPEPTVSWRKDGQPLNLDNERVRIVDDGNLLIAEARKSDEGTYKCVATNMVGERESAAAR 83 (86)
T ss_pred ccEEEeCCCCEEEEEECCCCCCCCEEEEEECCEECCCCCCCEEEccCCEEEEeECCcccCEEEEEEEEeccCceeeeeEE
Confidence 34557899999999998 7899999999999998876 445566667889999999999999999999999987543 34
Q ss_pred E
Q psy12060 673 L 673 (978)
Q Consensus 673 l 673 (978)
|
T Consensus 84 l 84 (86)
T cd05724 84 L 84 (86)
T ss_pred E
Confidence 4
No 167
>cd05870 Ig5_NCAM-2 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM). Ig5_NCAM-2: the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.
Probab=99.20 E-value=1.1e-10 Score=98.66 Aligned_cols=91 Identities=21% Similarity=0.402 Sum_probs=68.0
Q ss_pred eceeeccCCcccccCCCceeEEEEeecCCCCeeEEeE--CCEECCCCCCCCCCCCcEEEe----cCEEEEEeCCCCCCCe
Q psy12060 488 EPNFTIPLTDKHMDNQADLTWTCEAFGVPDVTYSWFR--NGELLNSETLPLEDQDRYFIQ----DNVLTIRYLNPERDPA 561 (978)
Q Consensus 488 ~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~i~W~~--~g~~~~~~~~~~~~~~~~~~~----~~~l~i~~~~~~~d~G 561 (978)
+|.+.. +.+..+.+|++++|.|.+.|.|.|.|.|+| ++..+..... ....++.+. ...|.|.++.. +|+|
T Consensus 2 ~p~i~~-~~~~~~~~G~~v~l~C~~~G~P~p~i~W~k~~~g~~~~~~~~--~~~~r~~v~~~~~~~~L~I~~v~~-~D~G 77 (98)
T cd05870 2 QPHIIQ-LKNETTVENGAATLSCKAEGEPIPEITWKRASDGHTFSEGDK--SPDGRIEVKGQHGESSLHIKDVKL-SDSG 77 (98)
T ss_pred CCEEEe-eccEEEcCCCcEEEEEecccCCCCeEEEEECCCCceeccCCc--CcCceEEEeecCCeeEEEEeeCCc-CCCE
Confidence 455543 566788999999999999999999999999 4444432110 112344442 24799999997 9999
Q ss_pred EEEEEEEcCCCceeeEEEEEE
Q psy12060 562 MYQCRAKNQLKTRYSSAQLRV 582 (978)
Q Consensus 562 ~Y~C~a~n~~g~~~~~~~l~v 582 (978)
.|+|.|.|..|....++.|.|
T Consensus 78 ~Y~C~A~N~~G~~~~~~~l~~ 98 (98)
T cd05870 78 RYDCEAASRIGGHQKSMYLDI 98 (98)
T ss_pred EEEEEEeccCCcceeEEEEeC
Confidence 999999999999888777653
No 168
>cd05752 Ig1_FcgammaR_like Frst immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins. Ig1_FcgammaR_like: domain similar to the first immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.
Probab=99.20 E-value=5.9e-11 Score=94.27 Aligned_cols=77 Identities=19% Similarity=0.377 Sum_probs=57.8
Q ss_pred CeeEeCCCceEecCCCccccCcEEEEEEeecCCC-CeEEEEEcccccccccccccCCCCCCceEeecceEEEeCCCCCCC
Q psy12060 190 PYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPN-PSYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVED 268 (978)
Q Consensus 190 P~~~~~p~~~~~~~~~~~~g~~~~l~C~~~g~p~-~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~d 268 (978)
|++...|....+. +|++++|+|.+.|.|. +.+.|||||..+. ..+++|.|.++ .+|
T Consensus 1 ~vv~~~P~~~~v~-----~G~~V~L~C~~~~~p~~~~~~W~kng~~l~----------------~~~~~l~i~~~--~~d 57 (78)
T cd05752 1 AVVSLDPPWTTIF-----QGEKVTLTCNGFNSPEQNSTQWYHNGKLLE----------------TTTNSYRIRAA--NND 57 (78)
T ss_pred CeEEeCCCCeEee-----CCCCEEEEEeCCCCCCCccEEEEECCEEee----------------ccCCeEEEeec--ccC
Confidence 4566677766644 4667999999999886 4799999996431 13567888886 899
Q ss_pred CeEEEEEEEeCceeEEeEEEEEEE
Q psy12060 269 RGSYHCKASNKFGSIISESVQLAF 292 (978)
Q Consensus 269 ~G~Y~C~a~n~~g~~~s~~~~l~v 292 (978)
+|.|+|+|.|. ..|..++|+|
T Consensus 58 sG~Y~C~a~~~---~~S~~v~l~V 78 (78)
T cd05752 58 SGEYRCQTQGS---SLSDPVHLEV 78 (78)
T ss_pred CEEeEEECCCC---cCCCCEEEeC
Confidence 99999999875 4567777754
No 169
>cd07702 Ig2_VEGFR-1 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1). Ig2_VEGFR-1: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1). VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-1 binds VEGF-A strongly; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-1 may play an inhibitory rolet in the function of VEGFR-2 by binding VEGF-A and interfering with its interaction with VEGFR-2. VEGFR-1 has a signaling role in mediating monocyte chemotaxis and may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.
Probab=99.19 E-value=9.1e-11 Score=90.76 Aligned_cols=66 Identities=23% Similarity=0.260 Sum_probs=53.4
Q ss_pred EEEEEeeccCCCCeeEEeeCCEEecCCCcEEEeecCcEEEccccCCCCEEEEEEEEeCCceeeeeE
Q psy12060 606 VTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTATNVHGMDESKG 671 (978)
Q Consensus 606 ~~l~C~~~~~p~~~i~W~~~g~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~ 671 (978)
+.|.|.+.|.|+|++.|+|+|.++............+|.|.++..+|+|.|+|.|.|.........
T Consensus 1 ~~l~c~v~g~P~P~v~W~kdg~~l~~~~~~~~~~~~~L~I~~v~~~D~G~YtC~a~~~~~~~~~~~ 66 (72)
T cd07702 1 YRLTPKVKAFPAPEVIWLKDGLPAAEKCSRYHVDGYSLVIKDVTEEDAGIYTILLGIKQYNLFKNL 66 (72)
T ss_pred CeEEeeEEEcCCCeEEEEECCEECCCCCcEEEeCCCEEEECcCCHHHCEEEEEEEEccccceEeeE
Confidence 468999999999999999999998765333333455899999999999999999999865554443
No 170
>cd07693 Ig1_Robo First immunoglobulin (Ig)-like domain in Robo (roundabout) receptors and similar proteins. Ig1_Robo: domain similar to the first immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit res
Probab=99.19 E-value=1.7e-10 Score=99.04 Aligned_cols=87 Identities=29% Similarity=0.585 Sum_probs=63.6
Q ss_pred CccccCCCCcceeecCCCeEEEEEeeccCCCCeeEEeeCCEEecC-----CCcEEEeecCcEEEc-----cccCCCCEEE
Q psy12060 587 PSFKKRPLESETYAGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGS-----GGRRKIFENGNLLIS-----PVSRDDSGIY 656 (978)
Q Consensus 587 p~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~i~W~~~g~~~~~-----~~~~~~~~~~~l~i~-----~~~~~d~G~Y 656 (978)
|.+...+ ....+.+|+++.|.|.+.|.|.|.+.|+|+|..+.. ..+.....++.+.+. .+..+|+|.|
T Consensus 2 P~i~~~p--~~~~v~~G~~~~l~C~~~g~P~p~i~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~D~G~Y 79 (100)
T cd07693 2 PRIVEHP--SDLIVSKGDPATLNCKAEGRPTPTIQWLKNGQPLETDKDDPRSHRIVLPSGSLFFLRVVHGRKGRSDEGVY 79 (100)
T ss_pred CeEEecC--ceeEEcCCCeEEEEeeCCcCCCCEEEEEECCEECccccCCCCcceEEecCCcEEEEEeeccCCCcCcCEEE
Confidence 4444433 345688999999999999999999999999998865 122333445543322 2368999999
Q ss_pred EEEEEeCCce-eeeeEEEEE
Q psy12060 657 SCTATNVHGM-DESKGRLIV 675 (978)
Q Consensus 657 ~C~a~n~~g~-~~~~~~l~v 675 (978)
+|.|.|..|. .+..+.|.|
T Consensus 80 ~C~a~N~~G~~~s~~~~l~v 99 (100)
T cd07693 80 VCVAHNSLGEAVSRNASLEV 99 (100)
T ss_pred EEEEEccccceecceEEEEe
Confidence 9999999999 555566655
No 171
>PF07679 I-set: Immunoglobulin I-set domain; InterPro: IPR013098 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents I-set domains, which are found in several cell adhesion molecules, including vascular (VCAM), intercellular (ICAM), neural (NCAM) and mucosal addressin (MADCAM) cell adhesion molecules, as well as junction adhesion molecules (JAM). I-set domains are also present in several other diverse protein families, including several tyrosine-protein kinase receptors, the hemolymph protein hemolin, the muscle proteins titin, telokin, and twitchin, the neuronal adhesion molecule axonin-1 [], and the signalling molecule semaphorin 4D that is involved in axonal guidance, immune function and angiogenesis [].; PDB: 3MTR_A 2EDK_A 3DMK_B 1KOA_A 3NCM_A 2NCM_A 2V9Q_A 2CR3_A 3QQN_A 3QR2_A ....
Probab=99.18 E-value=9.4e-11 Score=98.12 Aligned_cols=86 Identities=34% Similarity=0.555 Sum_probs=72.0
Q ss_pred ceeeccCCcccccCCCceeEEEEeecCCCCeeEEeECCEECCCCCCCCCCCCcEEE----ecCEEEEEeCCCCCCCeEEE
Q psy12060 489 PNFTIPLTDKHMDNQADLTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFI----QDNVLTIRYLNPERDPAMYQ 564 (978)
Q Consensus 489 p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~i~W~~~g~~~~~~~~~~~~~~~~~~----~~~~l~i~~~~~~~d~G~Y~ 564 (978)
|.|...+.+..+.+|++++|.|.+.+.|.+.+.|+++|..+.. ..++.+ ....|.|.++.. +|+|.|+
T Consensus 1 P~~~~~~~~~~v~~G~~~~l~c~~~~~p~~~v~W~~~~~~l~~-------~~~~~~~~~~~~~~L~I~~v~~-~D~G~Y~ 72 (90)
T PF07679_consen 1 PVFTKKPKDVTVKEGESVTLECEVSGNPPPTVTWYKNGRPLTS-------SQRYQIESDGGSSSLTIKNVTR-EDAGTYT 72 (90)
T ss_dssp EEEEEESSEEEEETTSEEEEEEEEEESSSSEEEEEETTEEEES-------SSSEEEEEETTEEEEEESSESG-GGSEEEE
T ss_pred CEEEEecCCEEEeCCCEEEEEEEEEeCCCCcccccccccceee-------eeeeeeecccceeEEccCCCCh-hhCEEEE
Confidence 6677778888999999999999999999999999999999874 233322 234799999996 9999999
Q ss_pred EEEEcCCCceeeEEEEEE
Q psy12060 565 CRAKNQLKTRYSSAQLRV 582 (978)
Q Consensus 565 C~a~n~~g~~~~~~~l~v 582 (978)
|.|.|..|....++.|.|
T Consensus 73 C~~~n~~g~~~~~~~l~V 90 (90)
T PF07679_consen 73 CVASNSSGEATASVNLTV 90 (90)
T ss_dssp EEEEETTEEEEEEEEEEE
T ss_pred EEEEECCCEEEEEEEEEC
Confidence 999999988888777764
No 172
>cd05858 Ig3_FGFR-2 Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor 2 (FGFR2). Ig3_FGFR-2-like; domain similar to the third immunoglobulin (Ig)-like domain of human fibroblast growth factor receptor 2 (FGFR2). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs. FGFR2 is required for male sex determination.
Probab=99.18 E-value=9.4e-11 Score=97.34 Aligned_cols=72 Identities=26% Similarity=0.505 Sum_probs=57.5
Q ss_pred CCcEEEEEEEeecCCCeeEEEEc----CccCCCCce--e---e--------ecccEEEeCCCCCCCCeEEEEEEEeCCCc
Q psy12060 414 GDKVRLECVAFGYPVPSYNWTRR----GSPLPRNAY--F---E--------NFNRILTIPNVKVEDQGEYICRASNDRSA 476 (978)
Q Consensus 414 G~~~~l~C~~~g~p~~~v~W~~~----~~~l~~~~~--~---~--------~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~ 476 (978)
|++++|.|.+.|.|.|.|+|+|+ +..+..... . . .....|.|.+++.+|+|.|+|.|.|..|.
T Consensus 1 G~~v~L~C~~~g~P~P~i~W~k~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~ 80 (90)
T cd05858 1 GSTVEFVCKVYSDAQPHIQWLKHVEKNGSKYGPDGLPYVTVLKTAGVNTTDKEMEVLYLRNVTFEDAGEYTCLAGNSIGI 80 (90)
T ss_pred CCeEEEEEEEecCCCCEEEEEEecccCCcEeCCCCCeeEEEeccCCceecCCceeEEEEccCCHHHCEEEEEEEEeCCCc
Confidence 78899999999999999999994 333321110 0 0 11257999999999999999999999999
Q ss_pred eEEEEEEEE
Q psy12060 477 LESSVTISI 485 (978)
Q Consensus 477 ~~~~~~l~V 485 (978)
...++.|.|
T Consensus 81 ~~~~a~L~V 89 (90)
T cd05858 81 SHHSAWLTV 89 (90)
T ss_pred ccceEEEEE
Confidence 999988887
No 173
>cd04971 Ig_TrKABC_d5 Fifth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC. TrkABC_d5: the fifth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrkB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor foun
Probab=99.18 E-value=1.3e-10 Score=93.29 Aligned_cols=67 Identities=21% Similarity=0.330 Sum_probs=56.0
Q ss_pred EEEeeccCCCCeeEEeeCCEEecCCCcEEEe----------ecCcEEEccccCCCCEEEEEEEEeCCceeeeeEEEE
Q psy12060 608 IFCNPEAAPKPKFVWKKDGNIIGSGGRRKIF----------ENGNLLISPVSRDDSGIYSCTATNVHGMDESKGRLI 674 (978)
Q Consensus 608 l~C~~~~~p~~~i~W~~~g~~~~~~~~~~~~----------~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~ 674 (978)
|.|.+.|.|.|+|+|+|+|..+..+.+.... ..+.|.|.++..+|+|.|+|.|.|..|....+..+.
T Consensus 3 i~~~v~G~P~P~v~W~k~g~~i~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~YtC~A~N~~G~~~~~~~~~ 79 (81)
T cd04971 3 IPFTVRGNPKPTLTWYHNGAVLNESDYIRTEIHYEVTTPTEYHGCLQFDNPTHVNNGNYTLVASNEYGQDSKSISAH 79 (81)
T ss_pred EEEEeEeeCCCcEEEEECCEECcCCCceeEEEEeecccccccEEEEEECCCCcccCeEEEEEEEeCCCCeeeEEEee
Confidence 6899999999999999999999876543221 133599999999999999999999999988877654
No 174
>cd05765 Ig_3 Subgroup of the immunoglobulin (Ig) superfamily. Ig_3: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=99.17 E-value=1.5e-10 Score=94.55 Aligned_cols=79 Identities=24% Similarity=0.426 Sum_probs=55.4
Q ss_pred cCcEEEEEEeecCCCCeEEEEEcccccccccccccCCCC-CCceE-eecceEEEeCCCCCCCCeEEEEEEEeCceeEEeE
Q psy12060 209 LNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLS-DKRFT-LSGGNLIINDPRQVEDRGSYHCKASNKFGSIISE 286 (978)
Q Consensus 209 g~~~~l~C~~~g~p~~~v~W~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~l~i~~~~~~~d~G~Y~C~a~n~~g~~~s~ 286 (978)
|++++|.|.+.|.|.|.+.|||++..... ..+.+.. ..++. ...++|.|.++ +.+|+|.|+|.|.|..|.. +.
T Consensus 1 G~~v~l~C~~~g~P~p~v~W~k~~~~~~~---~~~~~~~~~~~~~~~~~~~L~I~~~-~~~D~G~Y~C~a~N~~G~~-~~ 75 (81)
T cd05765 1 GETASFHCDVTGRPPPEITWEKQVHGKEN---LIMRPNHVRGNVVVTNIGQLVIYNA-QPQDAGLYTCTARNSGGLL-RA 75 (81)
T ss_pred CCcEEEEeeccccCCCcEEEEecCCCCcc---eeecCCcccCCEEEccccEEEEccC-CcccCEEEEEEEecCCceE-EE
Confidence 67799999999999999999998531111 0111111 11222 23468999997 8999999999999999985 45
Q ss_pred EEEEEE
Q psy12060 287 SVQLAF 292 (978)
Q Consensus 287 ~~~l~v 292 (978)
.++|.|
T Consensus 76 ~~~l~v 81 (81)
T cd05765 76 NFPLSV 81 (81)
T ss_pred EEEEeC
Confidence 566543
No 175
>cd05736 Ig2_Follistatin_like Second immunoglobulin (Ig)-like domain of a follistatin-like molecule encoded by the Mahya gene and similar proteins. Ig2_Follistatin_like: domain similar to the second immunoglobulin (Ig)-like domain found in a follistatin-like molecule encoded by the CNS-related Mahya gene. Mahya genes have been retained in certain Bilaterian branches during evolution. They are conserved in Hymenoptera and Deuterostomes, but are absent from other metazoan species such as fruit fly and nematode. Mahya proteins are secretory, with a follistatin-like domain (Kazal-type serine/threonine protease inhibitor domain and EF-hand calcium-binding domain), two Ig-like domains, and a novel C-terminal domain. Mahya may be involved in learning and memory and in processing of sensory information in Hymenoptera and vertebrates. Follistatin is a secreted, multidomain protein that binds activins with high affinity and antagonizes their signaling.
Probab=99.17 E-value=1.8e-10 Score=92.36 Aligned_cols=70 Identities=29% Similarity=0.524 Sum_probs=59.5
Q ss_pred EEEEEEEeecCCCeeEEEEcCccCCCCc--e--eeecccEEEeCCCCCCCCeEEEEEEEeCCCceEEEEEEEEE
Q psy12060 417 VRLECVAFGYPVPSYNWTRRGSPLPRNA--Y--FENFNRILTIPNVKVEDQGEYICRASNDRSALESSVTISIQ 486 (978)
Q Consensus 417 ~~l~C~~~g~p~~~v~W~~~~~~l~~~~--~--~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~ 486 (978)
+.|.|.+.|.|.|.+.|+|++..+.... + ....+..|.|.++..+|+|.|+|.|.|..|..+..+.|.|.
T Consensus 1 ~~L~C~v~g~P~p~v~W~k~~~~l~~~~~~~~~~~~~~~~l~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~V~ 74 (76)
T cd05736 1 ASLRCHAEGIPLPRLTWLKNGMDITPKLSKQLTLIANGSELHISNVRYEDTGAYTCIAKNEAGVDEDISSLFVE 74 (76)
T ss_pred CEeEeEeeecCCCEEEEEECCEECCCCCCccEEEeCCCCEEEECcCCcccCEEEEEEEEcCCCCcceEEEEEEE
Confidence 4699999999999999999999876432 1 22234579999999999999999999999999999999886
No 176
>cd05845 Ig2_L1-CAM_like Second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins. Ig2_L1-CAM_like: domain similar to the second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.
Probab=99.16 E-value=1.2e-10 Score=94.60 Aligned_cols=74 Identities=23% Similarity=0.475 Sum_probs=63.9
Q ss_pred CCCeeeecccCeEEEeCCCCCCCCceEEEecccccccccccceEEEeeCCcEEEeeeeeecce-eeEEEEEeeccc
Q psy12060 302 RAPEIGNQNWGKAMFCDPPTNYPGVNYYWARDYFPNFVEEDKRVFVSYDGALYFSALEQIDAG-NYSCNVQSKVSD 376 (978)
Q Consensus 302 ~~~~~~~~~~~~~l~C~~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G-~Y~C~~~n~~~~ 376 (978)
.....+.+|+++.|.|.++.|.|.|.|.|++++... +..+.|+.+..+|+|.|.+++.+|+| .|.|.|.|....
T Consensus 10 ~~~v~V~eG~~~~L~C~pP~g~P~P~i~W~~~~~~~-i~~~~Ri~~~~~GnL~fs~v~~~D~g~~Y~C~a~~~~~~ 84 (95)
T cd05845 10 IRPVEVEEGDSVVLPCNPPKSAVPLRIYWMNSDLLH-ITQDERVSMGQNGNLYFANVEEQDSHPDYICHAHFPGLR 84 (95)
T ss_pred cceeEEecCCCEEEEecCCCCCCCCEEEEECCCCcc-ccccccEEECCCceEEEEEEehhhCCCCeEEEEEccccc
Confidence 455678899999999998899999999999876553 44678888988999999999999999 899999987643
No 177
>cd05722 Ig1_Neogenin First immunoglobulin (Ig)-like domain in neogenin and similar proteins. Ig1_Neogenin: first immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.
Probab=99.16 E-value=2.2e-10 Score=96.41 Aligned_cols=78 Identities=40% Similarity=0.689 Sum_probs=62.8
Q ss_pred ceeecCCCeEEEEEeeccCCCCeeEEeeCCEEecCCCc--EEEeecCcEEEccc-----cCCCCEEEEEEEEeC-Cceee
Q psy12060 597 ETYAGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGR--RKIFENGNLLISPV-----SRDDSGIYSCTATNV-HGMDE 668 (978)
Q Consensus 597 ~~~~~~g~~~~l~C~~~~~p~~~i~W~~~g~~~~~~~~--~~~~~~~~l~i~~~-----~~~d~G~Y~C~a~n~-~g~~~ 668 (978)
...+.+|+++.|.|.+.|.|.|.+.|+|+|..+..... ..+..+++|.|.++ ..+|+|.|+|.|.|. .|...
T Consensus 8 ~~~~~~g~~v~l~C~v~g~P~p~i~W~k~g~~l~~~~~~~~~~~~~~~l~i~~v~~~~~~~~D~G~Y~C~a~N~~~G~~~ 87 (95)
T cd05722 8 DIVAVRGGPVVLNCSAEGEPPPKIEWKKDGVLLNLVSDERRQQLPNGSLLITSVVHSKHNKPDEGFYQCVAQNDSLGSIV 87 (95)
T ss_pred CeEEcCCCCEEEeeecccCCCCEEEEEECCeECccccCcceEEccCCeEEEeeeeccCCCCCcCEEEEEEEECCccCcEE
Confidence 34467899999999999999999999999998875433 55566777888776 589999999999999 98874
Q ss_pred e-eEEEE
Q psy12060 669 S-KGRLI 674 (978)
Q Consensus 669 ~-~~~l~ 674 (978)
+ .+.|.
T Consensus 88 s~~~~l~ 94 (95)
T cd05722 88 SRTARLT 94 (95)
T ss_pred EeeeEEe
Confidence 3 44544
No 178
>cd05763 Ig_1 Subgroup of the immunoglobulin (Ig) superfamily. Ig_1: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=99.15 E-value=1.8e-10 Score=92.03 Aligned_cols=70 Identities=31% Similarity=0.595 Sum_probs=57.1
Q ss_pred EEEEEeeccCCCCeeEEeeCCEEec---CCCcEEEe-ecCcEEEccccCCCCEEEEEEEEeCCceeeeeEEEEE
Q psy12060 606 VTIFCNPEAAPKPKFVWKKDGNIIG---SGGRRKIF-ENGNLLISPVSRDDSGIYSCTATNVHGMDESKGRLIV 675 (978)
Q Consensus 606 ~~l~C~~~~~p~~~i~W~~~g~~~~---~~~~~~~~-~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v 675 (978)
++|.|.+.|.|.|.++|+|+|.... ...++.+. ..+.|.|.+++.+|+|.|+|.|.|..|.....+.|.|
T Consensus 1 a~l~C~~~G~P~P~v~W~k~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~A~N~~G~~~~~~~l~V 74 (75)
T cd05763 1 ARLECAATGHPTPQIAWQKDGGTDFPAARERRMHVMPEDDVFFIVDVKIEDTGVYSCTAQNTAGSISANATLTV 74 (75)
T ss_pred CEeEeecccccCCEEEEEeCCCccCCcccccceEEecCCCEEEEeeCCcccCEEEEEEEEcCCCEEEeeEEEEE
Confidence 4799999999999999999986422 22333333 3457999999999999999999999999998888876
No 179
>cd05765 Ig_3 Subgroup of the immunoglobulin (Ig) superfamily. Ig_3: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=99.15 E-value=1.8e-10 Score=94.02 Aligned_cols=72 Identities=26% Similarity=0.467 Sum_probs=57.7
Q ss_pred CCcEEEEEEEeecCCCeeEEEEcCc---cC--CCCc----eeeecccEEEeCCCCCCCCeEEEEEEEeCCCceEEEEEEE
Q psy12060 414 GDKVRLECVAFGYPVPSYNWTRRGS---PL--PRNA----YFENFNRILTIPNVKVEDQGEYICRASNDRSALESSVTIS 484 (978)
Q Consensus 414 G~~~~l~C~~~g~p~~~v~W~~~~~---~l--~~~~----~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~ 484 (978)
|++++|.|.+.|.|.|.|+|+|++. .+ .... ........|.|.+++.+|+|.|+|.|.|..|.....+.|.
T Consensus 1 G~~v~l~C~~~g~P~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~ 80 (81)
T cd05765 1 GETASFHCDVTGRPPPEITWEKQVHGKENLIMRPNHVRGNVVVTNIGQLVIYNAQPQDAGLYTCTARNSGGLLRANFPLS 80 (81)
T ss_pred CCcEEEEeeccccCCCcEEEEecCCCCcceeecCCcccCCEEEccccEEEEccCCcccCEEEEEEEecCCceEEEEEEEe
Confidence 7899999999999999999999742 11 1111 1122346899999999999999999999999999988887
Q ss_pred E
Q psy12060 485 I 485 (978)
Q Consensus 485 V 485 (978)
|
T Consensus 81 v 81 (81)
T cd05765 81 V 81 (81)
T ss_pred C
Confidence 5
No 180
>cd04974 Ig3_FGFR Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Ig3_FGFR: third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs.
Probab=99.15 E-value=1.8e-10 Score=95.47 Aligned_cols=73 Identities=30% Similarity=0.516 Sum_probs=57.4
Q ss_pred CCeEEEEEeeccCCCCeeEEeeCC----EEecCCCc--EEEe----------ecCcEEEccccCCCCEEEEEEEEeCCce
Q psy12060 603 GGNVTIFCNPEAAPKPKFVWKKDG----NIIGSGGR--RKIF----------ENGNLLISPVSRDDSGIYSCTATNVHGM 666 (978)
Q Consensus 603 g~~~~l~C~~~~~p~~~i~W~~~g----~~~~~~~~--~~~~----------~~~~l~i~~~~~~d~G~Y~C~a~n~~g~ 666 (978)
|+.++|.|.+.|.|.|.|+|+|++ ..+..... .... ..+.|.|.+++.+|+|.|+|.|.|..|.
T Consensus 1 G~~v~l~C~v~g~P~P~i~W~k~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~ 80 (90)
T cd04974 1 GSDVEFHCKVYSDAQPHIQWLKHVEVNGSKYGPDGLPYVTVLKVAGINTTDNESEVLYLRNVSFDDAGEYTCLAGNSIGP 80 (90)
T ss_pred CCcEEEEEEEeCCCCCeEEEEEecccCCceeCCCCCceEEEEEecCCcccccccceEEEeccccccCcEEEEEeecccCc
Confidence 678999999999999999999963 33322211 1111 1235999999999999999999999999
Q ss_pred eeeeEEEEE
Q psy12060 667 DESKGRLIV 675 (978)
Q Consensus 667 ~~~~~~l~v 675 (978)
..+++.|.|
T Consensus 81 ~~~sa~L~V 89 (90)
T cd04974 81 SHHSAWLTV 89 (90)
T ss_pred ccCCEEEEe
Confidence 999998887
No 181
>cd04977 Ig1_NCAM-1_like First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1 and similar proteins. Ig1_NCAM-1 like: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the s
Probab=99.15 E-value=3.3e-10 Score=94.15 Aligned_cols=82 Identities=22% Similarity=0.351 Sum_probs=56.7
Q ss_pred eCCCceEecCCCccccCcEEEEEEeecCCCCeEEEEEc-ccccccccccccCCCCCCceEee----cceEEEeCCCCCCC
Q psy12060 194 KQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKE-DYVQDRLVANLIDPLSDKRFTLS----GGNLIINDPRQVED 268 (978)
Q Consensus 194 ~~p~~~~~~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~-~~~~~~~~~~~~~~~~~~~~~~~----~~~l~i~~~~~~~d 268 (978)
..|.+..+ .+|+++.|.|.+.|.| +.+.|+++ +..+.. ........ .++|.|.++ +.+|
T Consensus 5 v~p~~~~v-----~~G~~~~l~C~~~G~p-~~i~W~~~~~~~~~~---------~~~~~~~~~~~~~~~L~I~~v-~~~D 68 (92)
T cd04977 5 IVPSQGEI-----SVGESKFFLCQVIGEP-KDISWFSPNGEKLVT---------QQQISVVQNDDVRSTLTIYNA-NIED 68 (92)
T ss_pred EecCcEEE-----CCCCeEEEEEEeEeeC-CeEEEECCCCCEecc---------CCCEEEEeCCCCEEEEEEecC-Cccc
Confidence 34555554 3467799999999997 49999984 432211 01111111 247999998 8999
Q ss_pred CeEEEEEEEeCceeEEeEEEEEE
Q psy12060 269 RGSYHCKASNKFGSIISESVQLA 291 (978)
Q Consensus 269 ~G~Y~C~a~n~~g~~~s~~~~l~ 291 (978)
+|.|+|.|.|..|...+.++.|.
T Consensus 69 ~G~Y~C~A~N~~g~~~~~sv~l~ 91 (92)
T cd04977 69 AGIYKCVATDAKGTESEATVNLK 91 (92)
T ss_pred CEEEEEEEEcCCCCcceeEEEEE
Confidence 99999999999877556666665
No 182
>cd05750 Ig_Pro_neuregulin Immunoglobulin (Ig)-like domain in neuregulins (NRGs). Ig_Pro_neuregulin: immunoglobulin (Ig)-like domain in neuregulins (NRGs). NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. There are four members of the neuregulin gene family (NRG1, -2, -3, and -4). The NRG-1 protein, binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. The other NRGs proteins bind one or the other or both of these ErbBs. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates processes such as target cell differentiation, and Schwann cell surv
Probab=99.14 E-value=1.3e-10 Score=93.09 Aligned_cols=66 Identities=29% Similarity=0.480 Sum_probs=55.0
Q ss_pred EEEEEEEee-cCCCeeEEEEcCccCCCCceee-------ecccEEEeCCCCCCCCeEEEEEEEeCCCceEEEEE
Q psy12060 417 VRLECVAFG-YPVPSYNWTRRGSPLPRNAYFE-------NFNRILTIPNVKVEDQGEYICRASNDRSALESSVT 482 (978)
Q Consensus 417 ~~l~C~~~g-~p~~~v~W~~~~~~l~~~~~~~-------~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~ 482 (978)
++|.|.+.| .|.|+++|+|++.++....... .....|.|.++..+|+|.|+|.|.|..|....++.
T Consensus 1 ~~l~C~~~g~~P~p~~~W~k~g~~l~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~ 74 (75)
T cd05750 1 LVLKCEATSEYPSLRFKWFKDGKELNRKNKPRNIKIRNKKKNSELQINKAKLADSGEYTCVVENILGNDTVTAN 74 (75)
T ss_pred CEEEEEccCCCCCceEEEEcCCeeccccCCcceEEEEecCceEEEEEccCCcccCeEEEEEEEEcCCceeEEEe
Confidence 479999999 9999999999999886543211 22468999999999999999999999999877664
No 183
>cd05742 Ig1_VEGFR_like First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor (R) and similar proteins. Ig1_VEGFR_like: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R) related proteins. The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF-A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF
Probab=99.14 E-value=2.3e-10 Score=93.67 Aligned_cols=72 Identities=28% Similarity=0.541 Sum_probs=58.9
Q ss_pred CCcEEEEEEEeec--CCCeeEEEEcCccCCCCcee---------eecccEEEeCCCCCCCCeEEEEEEEeCCCceEEEEE
Q psy12060 414 GDKVRLECVAFGY--PVPSYNWTRRGSPLPRNAYF---------ENFNRILTIPNVKVEDQGEYICRASNDRSALESSVT 482 (978)
Q Consensus 414 G~~~~l~C~~~g~--p~~~v~W~~~~~~l~~~~~~---------~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~ 482 (978)
|++++|.|.+.|. |.+.|+|++++..+...... ......|.|.+++.+|+|.|+|.|.|..|..+.+..
T Consensus 1 Ge~~~L~C~~~g~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~v~~~DsG~Y~C~a~n~~~~~~~s~~ 80 (84)
T cd05742 1 GETLVLNCTVLTELNEGVDFQWTYPGKKRGRGKSMVTRQSLSEATELSSTLTIPNATLKDSGTYTCAASSGTMDQKESTK 80 (84)
T ss_pred CCeEEEEEEEEeCCCccEEEEEecCCcccCCceEeecccccccceEEEEEEEECCCChhhCEEEEEEEccCCCceEEEEE
Confidence 7899999999998 88899999988765322111 123468999999999999999999999999888888
Q ss_pred EEE
Q psy12060 483 ISI 485 (978)
Q Consensus 483 l~V 485 (978)
|.|
T Consensus 81 v~v 83 (84)
T cd05742 81 VNI 83 (84)
T ss_pred EEE
Confidence 766
No 184
>cd05771 IgC_Tapasin_R Tapasin-R immunoglobulin-like domain. IgC_Tapasin_R: Immunoglobulin-like domain on Tapasin-R. Tapasin is a V-C1 (variable-constant) immunoglobulin superfamily molecule present in the endoplasmic reticulum (ER), where it links MHC class I molecules to the transporter associated with antigen processing (TAP). Tapasin-R is a tapasin-related protein that contains similar structural motifs to Tapasin, with some marked differences, especially in the V domain, transmembrane and cytoplasmic regions. The majority of Tapasin-R is located within the ER; however, there may be some expression of Tapasin-R at the cell surface. Tapasin-R lacks an obvious ER retention signal.
Probab=99.14 E-value=2.6e-10 Score=103.84 Aligned_cols=116 Identities=19% Similarity=0.263 Sum_probs=78.6
Q ss_pred eEEEeCCCCCCCCeEEEEEEEeCceeEEeEEEEEEEeeecccccCCCCeeeecccCeEEEeCCCCCCCC-ceEEEecccc
Q psy12060 257 NLIINDPRQVEDRGSYHCKASNKFGSIISESVQLAFGFIGEFNLKRAPEIGNQNWGKAMFCDPPTNYPG-VNYYWARDYF 335 (978)
Q Consensus 257 ~l~i~~~~~~~d~G~Y~C~a~n~~g~~~s~~~~l~v~~~~~~~~~~~~~~~~~~~~~~l~C~~~~~~p~-~~i~W~~~~~ 335 (978)
+|.|.++ +.+|+|.|+|.+.+..|.. ...++|+|..+|.+...+.......+..++|.|.+.+.+|+ +.|.|+|+|.
T Consensus 2 sL~i~~v-~~~D~G~Y~C~~~~~~~~~-~~~~~l~v~~~P~v~~~~~~~~~~~~~~~~L~C~a~g~~P~~~~i~W~~~g~ 79 (139)
T cd05771 2 SLTLPGL-TVHDEGTYICSVSTPPHQA-QQIIQLSVSEPPRVRLSLEKLVSMIEEPQTLICHIAGYYPLDVQVEWTREPP 79 (139)
T ss_pred eEEECCC-CHHHCEEEEEEEEccCcce-eeEEEEEEecCCceEEeCCCceeecCCcEEEEEEECCCCCCCeEEEEEECCC
Confidence 5889897 9999999999999877763 56788888877765444433333467789999999766776 6999999985
Q ss_pred cccc----ccc---ceEEEeeCCc------EEEeeeeeecceeeEEEEEeec
Q psy12060 336 PNFV----EED---KRVFVSYDGA------LYFSALEQIDAGNYSCNVQSKV 374 (978)
Q Consensus 336 ~~~~----~~~---~~~~~~~~~~------L~i~~~~~~d~G~Y~C~~~n~~ 374 (978)
.... ... .......+|+ |.|.....++.+.|+|.+.+..
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~dgt~~~~s~L~v~~~~~~~g~~ytC~V~H~~ 131 (139)
T cd05771 80 GDSPPPVSLSNVSFSSHRQHQDGTYSLSSHLTLEPGTEDAGATYTCRVSHVS 131 (139)
T ss_pred CCccceeccCCeEecceEeCCCCCEEEEEEEEecCCccCCCCEEEEEEEcCC
Confidence 4221 011 1122334554 3443333344669999998764
No 185
>cd05732 Ig5_NCAM-1_like Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM) and similar proteins. Ig5_NCAM-1 like: domain similar to the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM mole
Probab=99.14 E-value=2.4e-10 Score=96.81 Aligned_cols=91 Identities=25% Similarity=0.383 Sum_probs=68.5
Q ss_pred eceeeccCCcccccCCCceeEEEEeecCCCCeeEEeECCEECCCCCCCCCCCCcEEEe----cCEEEEEeCCCCCCCeEE
Q psy12060 488 EPNFTIPLTDKHMDNQADLTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQ----DNVLTIRYLNPERDPAMY 563 (978)
Q Consensus 488 ~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~i~W~~~g~~~~~~~~~~~~~~~~~~~----~~~l~i~~~~~~~d~G~Y 563 (978)
+|.|. .+.+..+.+|+++.|.|.+.|.|.+.+.|++++..+..... ....++.+. ...|.|.++.. +|+|.|
T Consensus 2 ~P~i~-~~~~~~~~~g~~v~l~C~~~g~p~p~v~W~~~~~~~~~~~~--~~~~~~~~~~~~~~~~L~I~~v~~-~D~G~Y 77 (96)
T cd05732 2 QPKIT-YLENQTAVELEQITLTCEAEGDPIPEITWRRATRNFSEGDK--SLDGRIVVRGHARVSSLTLKDVQL-TDAGRY 77 (96)
T ss_pred Cccce-ecCceeEecCCcEEEEEEEeEcCCCcEEEEECCcccCCCCc--cccceEEEeCCccEEEEEECcCCc-CcCEEe
Confidence 46664 34567789999999999999999999999999866542211 012233332 24799999996 999999
Q ss_pred EEEEEcCCCceeeEEEEEE
Q psy12060 564 QCRAKNQLKTRYSSAQLRV 582 (978)
Q Consensus 564 ~C~a~n~~g~~~~~~~l~v 582 (978)
+|.|.|..|....++.|.|
T Consensus 78 ~C~a~N~~G~~~~s~~l~v 96 (96)
T cd05732 78 DCEASNRIGGDQQSMYLEV 96 (96)
T ss_pred EEEEEeCCCCcEEEEEEeC
Confidence 9999999999887776653
No 186
>cd05758 Ig5_KIRREL3-like Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2) and similar proteins. Ig5_KIRREL3-like: domain similar to the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.
Probab=99.13 E-value=2.5e-10 Score=96.62 Aligned_cols=74 Identities=28% Similarity=0.434 Sum_probs=60.3
Q ss_pred CCCCCCcEEEEEEEeecCCC-eeEEEEcCccCCCC--ceeee--------cccEEEeCCCCC-CCCeEEEEEEEeCCCce
Q psy12060 410 APKAGDKVRLECVAFGYPVP-SYNWTRRGSPLPRN--AYFEN--------FNRILTIPNVKV-EDQGEYICRASNDRSAL 477 (978)
Q Consensus 410 ~v~~G~~~~l~C~~~g~p~~-~v~W~~~~~~l~~~--~~~~~--------~~~~L~i~~~~~-~d~G~Y~C~a~n~~g~~ 477 (978)
.+.+|++++|.|.+.|.|.| .|.|++++..+... .++.. ..++|.|.++.. +|.|.|+|.|.|..|..
T Consensus 12 ~~~~G~~v~L~C~~~g~P~P~~v~W~~~~~~i~~~~~~r~~i~~~~~~~~~~s~L~I~~v~~~d~~G~Y~C~A~N~~G~~ 91 (98)
T cd05758 12 YAILGDKGRVECFIFSTPPPDRIVWTWKENELESGSSGRYTVETDPSPGGVLSTLTISNTQESDFQTSYNCTAWNSFGSG 91 (98)
T ss_pred EEeCCCcEEEEEEEcccCCCCEeEEEECCEEccCCCCCCEEEEEecCCCceEEEEEECCccccccceeEEEEEEcCCCcc
Confidence 45789999999999999999 69999999888643 22221 124799999999 45999999999999998
Q ss_pred EEEEEE
Q psy12060 478 ESSVTI 483 (978)
Q Consensus 478 ~~~~~l 483 (978)
...+.|
T Consensus 92 ~~~~~L 97 (98)
T cd05758 92 TAIISL 97 (98)
T ss_pred cEEEEe
Confidence 887765
No 187
>cd05858 Ig3_FGFR-2 Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor 2 (FGFR2). Ig3_FGFR-2-like; domain similar to the third immunoglobulin (Ig)-like domain of human fibroblast growth factor receptor 2 (FGFR2). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs. FGFR2 is required for male sex determination.
Probab=99.13 E-value=2.6e-10 Score=94.66 Aligned_cols=73 Identities=27% Similarity=0.539 Sum_probs=58.2
Q ss_pred CCeEEEEEeeccCCCCeeEEeeC----CEEecCCCc--EEEee----------cCcEEEccccCCCCEEEEEEEEeCCce
Q psy12060 603 GGNVTIFCNPEAAPKPKFVWKKD----GNIIGSGGR--RKIFE----------NGNLLISPVSRDDSGIYSCTATNVHGM 666 (978)
Q Consensus 603 g~~~~l~C~~~~~p~~~i~W~~~----g~~~~~~~~--~~~~~----------~~~l~i~~~~~~d~G~Y~C~a~n~~g~ 666 (978)
|+.++|.|.+.|.|.|.|+|+++ |..+..+.. ..+.. .+.|.|.+++.+|+|.|+|.|.|..|.
T Consensus 1 G~~v~L~C~~~g~P~P~i~W~k~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~ 80 (90)
T cd05858 1 GSTVEFVCKVYSDAQPHIQWLKHVEKNGSKYGPDGLPYVTVLKTAGVNTTDKEMEVLYLRNVTFEDAGEYTCLAGNSIGI 80 (90)
T ss_pred CCeEEEEEEEecCCCCEEEEEEecccCCcEeCCCCCeeEEEeccCCceecCCceeEEEEccCCHHHCEEEEEEEEeCCCc
Confidence 68899999999999999999984 444433221 11111 136999999999999999999999999
Q ss_pred eeeeEEEEE
Q psy12060 667 DESKGRLIV 675 (978)
Q Consensus 667 ~~~~~~l~v 675 (978)
...++.|.|
T Consensus 81 ~~~~a~L~V 89 (90)
T cd05858 81 SHHSAWLTV 89 (90)
T ss_pred ccceEEEEE
Confidence 999998887
No 188
>cd05856 Ig2_FGFRL1-like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1). Ig2_FGFRL1-like: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1). FGFRL1 is comprised of a signal peptide, three extracellular Ig-like modules, a transmembrane segment, and a short intracellular domain. FGFRL1 is expressed preferentially in skeletal tissues. Similar to FGF receptors, the expressed protein interacts specifically with heparin and with FGF2. FGFRL1 does not have a protein tyrosine kinase domain at its C terminus; neither does its cytoplasmic domain appear to interact with a signaling partner. It has been suggested that FGFRL1 may not have any direct signaling function, but instead acts as a decoy receptor trapping FGFs and preventing them from binding other receptors.
Probab=99.13 E-value=2.2e-10 Score=93.98 Aligned_cols=77 Identities=22% Similarity=0.386 Sum_probs=62.8
Q ss_pred eecCCCeEEEEEeeccCCCCeeEEeeCCEEecCCCcEEE-eecCcEEEccccCCCCEEEEEEEEeCCceeeeeEEEEE
Q psy12060 599 YAGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKI-FENGNLLISPVSRDDSGIYSCTATNVHGMDESKGRLIV 675 (978)
Q Consensus 599 ~~~~g~~~~l~C~~~~~p~~~i~W~~~g~~~~~~~~~~~-~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v 675 (978)
....|+++.|.|.+.|.|.|.+.|++++..+........ ....+|.|.++..+|+|.|+|.|.|..|.....+.|.|
T Consensus 5 ~~~~G~~v~L~C~~~g~p~p~i~W~k~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~~v~v 82 (82)
T cd05856 5 ARPVGSSVRLKCVASGNPRPDITWLKDNKPLTPTEIGESRKKKWTLSLKNLKPEDSGKYTCHVSNRAGEINATYKVDV 82 (82)
T ss_pred eccCCCeEEEEEEeeEeCCCcEEEEECCcCCcCCccceecCceEEEEEccCChhhCEEEEEEEEcCCccEEEEEEEeC
Confidence 356799999999999999999999999988765433222 12346999999999999999999999998877776653
No 189
>cd05734 Ig7_DSCAM Seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM). Ig7_DSCAM: the seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.
Probab=99.12 E-value=2.9e-10 Score=91.80 Aligned_cols=69 Identities=35% Similarity=0.544 Sum_probs=53.1
Q ss_pred EEEEEEEeecCCCeeEEEEcCccC-C-------CCcee-eecccEEEeCCCCCCCCeEEEEEEEeCCCce-EEEEEEEE
Q psy12060 417 VRLECVAFGYPVPSYNWTRRGSPL-P-------RNAYF-ENFNRILTIPNVKVEDQGEYICRASNDRSAL-ESSVTISI 485 (978)
Q Consensus 417 ~~l~C~~~g~p~~~v~W~~~~~~l-~-------~~~~~-~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~-~~~~~l~V 485 (978)
++|.|.+.|+|.|.|.|+|++... + ...+. ...+++|.|.++..+|+|.|+|.|.|..|.. +.++.|+|
T Consensus 1 v~l~C~~~G~P~P~v~W~~~~~~~~~~~~~~~~~~~r~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~s~~~~l~~ 79 (79)
T cd05734 1 VTLNCSAEGYPPPTIVWKHSKGRGHPQHTHTCCLAGRIQLLSNGSLLIKHVLEEDSGYYLCKVSNDVGADASKSMVLTV 79 (79)
T ss_pred CEeEeeCeEeCCCEEEEEECCCccccccccccccCCCEEEecCCeEEECcCCcccCEEEEEEEEeCCCCCCceEEEEeC
Confidence 579999999999999999975422 1 11122 2345789999999999999999999999876 56666654
No 190
>cd05861 Ig1_PDGFR-alphabeta Frst immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b). Ig1_PDGFR-alphabeta: The first immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b). PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFRalpha binds to all three PDGFs, whereas the PDGFRbeta binds only to PDGF-B. PDGFRs alpha and beta have similar organization: an extracellular component with five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFRalpha and PDGFRbeta are essential for normal development.
Probab=99.11 E-value=7.2e-10 Score=90.16 Aligned_cols=73 Identities=26% Similarity=0.574 Sum_probs=57.5
Q ss_pred CCcEEEEEEEeecCCCeeEEEEcCccCCCCc----ee----eecccEEEeCCCCCCCCeEEEEEEEeCCC--ceEEEEEE
Q psy12060 414 GDKVRLECVAFGYPVPSYNWTRRGSPLPRNA----YF----ENFNRILTIPNVKVEDQGEYICRASNDRS--ALESSVTI 483 (978)
Q Consensus 414 G~~~~l~C~~~g~p~~~v~W~~~~~~l~~~~----~~----~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g--~~~~~~~l 483 (978)
|++++|.|.+.+.|.+.+.|++.++...... .. .....+|.|.+++.+|+|.|+|.|+|..+ ..++++.|
T Consensus 1 Ge~~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~~~~~DsG~Y~C~a~n~~~~~~~~~sv~i 80 (84)
T cd05861 1 GETITVNCIVQGNEVVDFSWTYPGKDIGKGIPEVEEVKVPATTLRSTLTFPHATVEDSGTYECAAHESTQDQKAFKKVNI 80 (84)
T ss_pred CCcEEEEEEEECCCccEEEEEECCccCCCCceEEEEEecCCcEEEEEEEECCCCcCCCEEEEEEEEECccCcceeEEEEE
Confidence 7899999999999999999998776432211 11 11246899999999999999999999766 56778888
Q ss_pred EEE
Q psy12060 484 SIQ 486 (978)
Q Consensus 484 ~V~ 486 (978)
+|.
T Consensus 81 ~V~ 83 (84)
T cd05861 81 TVH 83 (84)
T ss_pred EEe
Confidence 775
No 191
>cd05758 Ig5_KIRREL3-like Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2) and similar proteins. Ig5_KIRREL3-like: domain similar to the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.
Probab=99.11 E-value=5.8e-10 Score=94.34 Aligned_cols=87 Identities=21% Similarity=0.245 Sum_probs=66.1
Q ss_pred eceeeccCCcccccCCCceeEEEEeecCCCC-eeEEeECCEECCCCCCCCCCCCcEEEec--------CEEEEEeCCCCC
Q psy12060 488 EPNFTIPLTDKHMDNQADLTWTCEAFGVPDV-TYSWFRNGELLNSETLPLEDQDRYFIQD--------NVLTIRYLNPER 558 (978)
Q Consensus 488 ~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~-~i~W~~~g~~~~~~~~~~~~~~~~~~~~--------~~l~i~~~~~~~ 558 (978)
+|.+.. +....+.+|+++.|.|.+.|.|.| .|.|++++..+... ...++.+.. ..|.|.++..++
T Consensus 2 pp~i~~-~~~~~~~~G~~v~L~C~~~g~P~P~~v~W~~~~~~i~~~-----~~~r~~i~~~~~~~~~~s~L~I~~v~~~d 75 (98)
T cd05758 2 PPIITS-EATQYAILGDKGRVECFIFSTPPPDRIVWTWKENELESG-----SSGRYTVETDPSPGGVLSTLTISNTQESD 75 (98)
T ss_pred CCeEcC-CCcEEEeCCCcEEEEEEEcccCCCCEeEEEECCEEccCC-----CCCCEEEEEecCCCceEEEEEECCccccc
Confidence 455543 445668999999999999999988 69999999988642 123443322 379999998645
Q ss_pred CCeEEEEEEEcCCCceeeEEEE
Q psy12060 559 DPAMYQCRAKNQLKTRYSSAQL 580 (978)
Q Consensus 559 d~G~Y~C~a~n~~g~~~~~~~l 580 (978)
|.|.|+|.|.|..|.....+.|
T Consensus 76 ~~G~Y~C~A~N~~G~~~~~~~L 97 (98)
T cd05758 76 FQTSYNCTAWNSFGSGTAIISL 97 (98)
T ss_pred cceeEEEEEEcCCCcccEEEEe
Confidence 5999999999999987776654
No 192
>cd05756 Ig1_IL1R_like First immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins. Ig1_IL1R_like: domain similar to the first immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.
Probab=99.10 E-value=3e-10 Score=94.16 Aligned_cols=78 Identities=26% Similarity=0.339 Sum_probs=62.6
Q ss_pred eeecCCCeEEEEEeecc-----CCCCeeEEeeCCEEecCC---CcEEEeecCcEEEccccCCCCEEEEEEEEeCCceeee
Q psy12060 598 TYAGEGGNVTIFCNPEA-----APKPKFVWKKDGNIIGSG---GRRKIFENGNLLISPVSRDDSGIYSCTATNVHGMDES 669 (978)
Q Consensus 598 ~~~~~g~~~~l~C~~~~-----~p~~~i~W~~~g~~~~~~---~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~ 669 (978)
..+.+|+++.|.|.+.+ .|.+.|.|+|++..+... .......++.|.|.++..+|+|.|+|.+.|..|....
T Consensus 9 ~~v~~G~~~~L~C~~~g~~~~~~p~~~v~Wyk~~~~~~~~~~~~~r~~~~~~~L~I~~~~~~DsG~Y~C~~~N~~g~~~~ 88 (94)
T cd05756 9 SYVLEGEPVVIKCPLFYSYIAQSPGLNLTWYKSDGKTPIPTEERSRMHQQKDLLWFLPAALEDSGLYTCVVRNSTYCMKV 88 (94)
T ss_pred EEEecCCCeEEECCCCCcccccCCCceEEEEEcCCCCcccccccceeeecCCeEEEccCCcccCeEEEEEEcCCCccEEE
Confidence 34678999999999999 688899999998764321 1112224578999999999999999999999999888
Q ss_pred eEEEEE
Q psy12060 670 KGRLIV 675 (978)
Q Consensus 670 ~~~l~v 675 (978)
++.|.|
T Consensus 89 ~~~L~v 94 (94)
T cd05756 89 SISLTV 94 (94)
T ss_pred EEEEEC
Confidence 887764
No 193
>cd04977 Ig1_NCAM-1_like First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1 and similar proteins. Ig1_NCAM-1 like: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the s
Probab=99.09 E-value=6.4e-10 Score=92.42 Aligned_cols=77 Identities=25% Similarity=0.460 Sum_probs=59.2
Q ss_pred ceeecCCCeEEEEEeeccCCCCeeEEee-CCEEecCCCcEEEeecC----cEEEccccCCCCEEEEEEEEeCCce-eeee
Q psy12060 597 ETYAGEGGNVTIFCNPEAAPKPKFVWKK-DGNIIGSGGRRKIFENG----NLLISPVSRDDSGIYSCTATNVHGM-DESK 670 (978)
Q Consensus 597 ~~~~~~g~~~~l~C~~~~~p~~~i~W~~-~g~~~~~~~~~~~~~~~----~l~i~~~~~~d~G~Y~C~a~n~~g~-~~~~ 670 (978)
...+..|+++.|.|.+.|.|+ .++|++ ++..+....++.+...+ +|.|.+++.+|+|.|+|.|.|..|. ...+
T Consensus 9 ~~~v~~G~~~~l~C~~~G~p~-~i~W~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~g~~~~~s 87 (92)
T cd04977 9 QGEISVGESKFFLCQVIGEPK-DISWFSPNGEKLVTQQQISVVQNDDVRSTLTIYNANIEDAGIYKCVATDAKGTESEAT 87 (92)
T ss_pred cEEECCCCeEEEEEEeEeeCC-eEEEECCCCCEeccCCCEEEEeCCCCEEEEEEecCCcccCEEEEEEEEcCCCCcceeE
Confidence 345789999999999999974 999997 67666554454443333 6999999999999999999998754 4445
Q ss_pred EEEE
Q psy12060 671 GRLI 674 (978)
Q Consensus 671 ~~l~ 674 (978)
+.|.
T Consensus 88 v~l~ 91 (92)
T cd04977 88 VNLK 91 (92)
T ss_pred EEEE
Confidence 5544
No 194
>cd05736 Ig2_Follistatin_like Second immunoglobulin (Ig)-like domain of a follistatin-like molecule encoded by the Mahya gene and similar proteins. Ig2_Follistatin_like: domain similar to the second immunoglobulin (Ig)-like domain found in a follistatin-like molecule encoded by the CNS-related Mahya gene. Mahya genes have been retained in certain Bilaterian branches during evolution. They are conserved in Hymenoptera and Deuterostomes, but are absent from other metazoan species such as fruit fly and nematode. Mahya proteins are secretory, with a follistatin-like domain (Kazal-type serine/threonine protease inhibitor domain and EF-hand calcium-binding domain), two Ig-like domains, and a novel C-terminal domain. Mahya may be involved in learning and memory and in processing of sensory information in Hymenoptera and vertebrates. Follistatin is a secreted, multidomain protein that binds activins with high affinity and antagonizes their signaling.
Probab=99.09 E-value=7.3e-10 Score=88.80 Aligned_cols=71 Identities=35% Similarity=0.628 Sum_probs=60.4
Q ss_pred EEEEEeeccCCCCeeEEeeCCEEecCCC--cEEEeecC-cEEEccccCCCCEEEEEEEEeCCceeeeeEEEEEE
Q psy12060 606 VTIFCNPEAAPKPKFVWKKDGNIIGSGG--RRKIFENG-NLLISPVSRDDSGIYSCTATNVHGMDESKGRLIVL 676 (978)
Q Consensus 606 ~~l~C~~~~~p~~~i~W~~~g~~~~~~~--~~~~~~~~-~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~ 676 (978)
+.|.|.+.|.|.|.+.|+|++..+..+. ++....++ .|.|.++..+|.|.|+|.|.|..|.....+.|.|.
T Consensus 1 ~~L~C~v~g~P~p~v~W~k~~~~l~~~~~~~~~~~~~~~~l~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~V~ 74 (76)
T cd05736 1 ASLRCHAEGIPLPRLTWLKNGMDITPKLSKQLTLIANGSELHISNVRYEDTGAYTCIAKNEAGVDEDISSLFVE 74 (76)
T ss_pred CEeEeEeeecCCCEEEEEECCEECCCCCCccEEEeCCCCEEEECcCCcccCEEEEEEEEcCCCCcceEEEEEEE
Confidence 3689999999999999999999887553 33344444 59999999999999999999999999999998875
No 195
>cd05733 Ig6_L1-CAM_like Sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins. Ig6_L1-CAM_like: domain similar to the sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains NrCAM [Ng(neuronglia)CAM-related cell adhesion molecule], which is primarily expressed in the nervous system, and human neurofascin.
Probab=99.07 E-value=4.7e-10 Score=89.72 Aligned_cols=63 Identities=32% Similarity=0.584 Sum_probs=50.7
Q ss_pred EEEEEEEeecCCCeeEEEEcCccCCCCc--e--eeecccEEEeCCCCC----CCCeEEEEEEEeCCCceEE
Q psy12060 417 VRLECVAFGYPVPSYNWTRRGSPLPRNA--Y--FENFNRILTIPNVKV----EDQGEYICRASNDRSALES 479 (978)
Q Consensus 417 ~~l~C~~~g~p~~~v~W~~~~~~l~~~~--~--~~~~~~~L~i~~~~~----~d~G~Y~C~a~n~~g~~~~ 479 (978)
++|.|.+.|.|.|+|+|+|++..+.... . ....++.|.|.++.. +|+|.|+|.|.|..|....
T Consensus 1 i~l~C~~~G~P~P~v~W~k~g~~l~~~~~~~~~~~~~~g~L~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~s 71 (77)
T cd05733 1 IVIKCEAKGNPPPTFSWTRNGTHFDPEKDPRVTMKPDSGTLVIDNMNGGRAEDYEGEYQCYASNELGTAIS 71 (77)
T ss_pred CEEEeeCcccCCCeEEEEECCeECCCCCCCCEEEeCCCCEEEEeccCCCCCcCCCEEEEEEEEcCCCcEEc
Confidence 4799999999999999999999885322 2 223467899998854 7999999999999997543
No 196
>cd05873 Ig_Sema4D_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4D. Ig_Sema4D_like; Immunoglobulin (Ig)-like domain of Sema4D. Sema4D is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4D has extracellular Sema and Ig domains, a transmembrane domain, and a short cytoplasmic domain. Sema4D plays a part in the development of GABAergic synapses. Sema4D in addition is an immune semaphorin. It is abundant on resting T cells; its expression is weak on resting B cells and antigen presenting cells (APCs), but is upregulated by various stimuli. The receptor used by Sema4D in the immune system is CD72. Sem4D enhances the activation of B cells and DCs through binding CD72, perhaps by reducing CD72s inhibitory signals. The receptor used by Sema4D in the non-lymphatic tissues is plexin-B1. Sem4D is anchored to the cell surface but its extracellular domain can be released from the cell surface by a metalloproteas
Probab=99.06 E-value=6.2e-10 Score=89.51 Aligned_cols=65 Identities=23% Similarity=0.376 Sum_probs=54.8
Q ss_pred CCCCCCCcEEEEEEEeecCCCeeEEEEcCccCCCC-ceeeecccEEEeCCCCCCCCeEEEEEEEeCC
Q psy12060 409 EAPKAGDKVRLECVAFGYPVPSYNWTRRGSPLPRN-AYFENFNRILTIPNVKVEDQGEYICRASNDR 474 (978)
Q Consensus 409 ~~v~~G~~~~l~C~~~g~p~~~v~W~~~~~~l~~~-~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~ 474 (978)
..+..|+++.|.|.+.+ |.++|+|+++|.+|... .++...++.|.|.+++.+|+|.|+|.|.+..
T Consensus 6 ~~v~~G~~v~L~C~~~~-~~~~i~W~~ng~~i~~~~~r~~~~~~~L~I~nv~~~DsG~Y~C~a~e~~ 71 (87)
T cd05873 6 RTFKLGNNAELKCSPKS-NLARVVWKFDGKVLTPESAKYLLYRDGLLIFNASEADAGRYQCLSVEKS 71 (87)
T ss_pred EEEECCCCEEEEEECCC-CCCeEEEEECCEECCCCCceEEEECCcEEEeCCCHHHCEEEEEEEEecc
Confidence 35678999999999765 67899999999999765 3455556789999999999999999999863
No 197
>cd05874 Ig6_NrCAM Sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule). Ig6_NrCAM: sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and an intracellular domain. NrCAM is primarily expressed in the nervous system.
Probab=99.06 E-value=7.2e-10 Score=88.30 Aligned_cols=63 Identities=32% Similarity=0.559 Sum_probs=49.7
Q ss_pred EEEEEEEeecCCCeeEEEEcCccCCCC--ce--eeecccEEEeCCCCC----CCCeEEEEEEEeCCCceEE
Q psy12060 417 VRLECVAFGYPVPSYNWTRRGSPLPRN--AY--FENFNRILTIPNVKV----EDQGEYICRASNDRSALES 479 (978)
Q Consensus 417 ~~l~C~~~g~p~~~v~W~~~~~~l~~~--~~--~~~~~~~L~i~~~~~----~d~G~Y~C~a~n~~g~~~~ 479 (978)
+.|.|.+.|.|.|+|+|+|++.++... .. ....+++|.|..+.. .|.|.|+|.|.|..|...+
T Consensus 1 ~~l~C~a~G~P~P~i~W~k~g~~l~~~~~~~~~~~~~~g~l~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~s 71 (77)
T cd05874 1 IVIQCEAKGKPPPSFSWTRNGTHFDIDKDPKVTMKPNTGTLVINIMNGEKAEAYEGVYQCTARNERGAAVS 71 (77)
T ss_pred CEEEeeCcccCCCeEEEEECCeECCCcCCCCEEEeCCCceEEEeccccCCCCCCCEEEEEEEEcCCCeEEe
Confidence 479999999999999999999987422 12 223467888887764 3789999999999998654
No 198
>cd04979 Ig_Semaphorin_C Immunoglobulin (Ig)-like domain of semaphorin. Ig_Semaphorin_C; Immunoglobulin (Ig)-like domain in semaphorins. Semaphorins are transmembrane protein that have important roles in a variety of tissues. Functionally, semaphorins were initially characterized for their importance in the development of the nervous system and in axonal guidance. Later they have been found to be important for the formation and functioning of the cardiovascular, endocrine, gastrointestinal, hepatic, immune, musculoskeletal, renal, reproductive, and respiratory systems. Semaphorins function through binding to their receptors and transmembrane semaphorins also serves as receptors themselves. Although molecular mechanism of semaphorins is poorly understood, the Ig-like domains may involve in ligand binding or dimerization.
Probab=99.06 E-value=1.1e-09 Score=90.91 Aligned_cols=78 Identities=18% Similarity=0.220 Sum_probs=58.5
Q ss_pred ccCcEEEEEEeecCCCCeEEEEEcccccccccccccCCCCCCceEeecceEEEeCCCCCCCCeEEEEEEEeCceeEEeEE
Q psy12060 208 ILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVEDRGSYHCKASNKFGSIISES 287 (978)
Q Consensus 208 ~g~~~~l~C~~~g~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~d~G~Y~C~a~n~~g~~~s~~ 287 (978)
+|+.+.|+|.+.+ |.+++.|+|++..+.... ....++....+.|.|.++ +.+|+|.|+|.|.+..+...+.+
T Consensus 10 ~g~~v~L~C~~~~-p~~~i~W~k~~~~~~~~~------~~~~~~~~~~~~L~I~~~-~~~D~G~Y~C~a~~~~~~~~~~~ 81 (89)
T cd04979 10 EGNSVFLECSPKS-NLASVVWLFQGGPLQRKE------EPEERLLVTEDGLLIRSV-SPADAGVYTCQSVEHGFKQTLAT 81 (89)
T ss_pred CCCcEEEEEeCCC-CCceEEEEECCccccccc------CcCceEEEcCCCEEEccC-CHHHCEEEEEEEecCccceeEeE
Confidence 4667999999987 888999999986542110 012344455567999887 89999999999998877766777
Q ss_pred EEEEEe
Q psy12060 288 VQLAFG 293 (978)
Q Consensus 288 ~~l~v~ 293 (978)
++|.|.
T Consensus 82 ~~l~V~ 87 (89)
T cd04979 82 YSLNVL 87 (89)
T ss_pred EEEEEe
Confidence 777663
No 199
>PF00041 fn3: Fibronectin type III domain; InterPro: IPR003961 Fibronectins are multi-domain glycoproteins found in a soluble form in plasma, and in an insoluble form in loose connective tissue and basement membranes []. They contain multiple copies of 3 repeat regions (types I, II and III), which bind to a variety of substances including heparin, collagen, DNA, actin, fibrin and fibronectin receptors on cell surfaces. The wide variety of these substances means that fibronectins are involved in a number of important functions: e.g., wound healing; cell adhesion; blood coagulation; cell differentiation and migration; maintenance of the cellular cytoskeleton; and tumour metastasis []. The role of fibronectin in cell differentiation is demonstrated by the marked reduction in the expression of its gene when neoplastic transformation occurs. Cell attachment has been found to be mediated by the binding of the tetrapeptide RGDS to integrins on the cell surface [], although related sequences can also display cell adhesion activity. Plasma fibronectin occurs as a dimer of 2 different subunits, linked together by 2 disulphide bonds near the C terminus. The difference in the 2 chains occurs in the type III repeat region and is caused by alternative splicing of the mRNA from one gene []. The observation that, in a given protein, an individual repeat of one of the 3 types (e.g., the first FnIII repeat) shows much less similarity to its subsequent tandem repeats within that protein than to its equivalent repeat between fibronectins from other species, has suggested that the repeating structure of fibronectin arose at an early stage of evolution. It also seems to suggest that the structure is subject to high selective pressure []. The fibronectin type III repeat region is an approximately 100 amino acid domain, different tandem repeats of which contain binding sites for DNA, heparin and the cell surface []. The superfamily of sequences believed to contain FnIII repeats represents 45 different families, the majority of which are involved in cell surface binding in some manner, or are receptor protein tyrosine kinases, or cytokine receptors.; GO: 0005515 protein binding; PDB: 1UEM_A 1TDQ_A 1X5I_A 2IC2_B 2IBG_C 2IBB_A 3R8Q_A 2FNB_A 1FNH_A 2EDB_A ....
Probab=99.05 E-value=6.3e-10 Score=92.08 Aligned_cols=84 Identities=32% Similarity=0.524 Sum_probs=69.1
Q ss_pred CCCCceEEEEeeCCeeEEEeecCCCCCCCceeEEEEEeeccccC-ceEecccccceeeeecCCceeeEEeeccCCCceeE
Q psy12060 779 GLPGGVQVVEVHKTSATIQWTDGATNGRPITHYKIIARTNWNST-WFNVSEHVIGKEVDRYTGRKEASIENVLVPWSTYE 857 (978)
Q Consensus 779 ~~P~~~~~~~~~~~~v~l~W~~p~~~~~~i~~Y~v~~~~~~~~~-w~~~~~~~~~~~~~~~~~~~~~~~~~~L~p~~~Y~ 857 (978)
.+|.++++..++.+++.|+|.+|...++.+.+|.|+|+...... |..... ......+++.+ |.|++.|.
T Consensus 1 s~P~~l~v~~~~~~sv~v~W~~~~~~~~~~~~y~v~~~~~~~~~~~~~~~~---------~~~~~~~~i~~-L~p~t~Y~ 70 (85)
T PF00041_consen 1 SAPENLSVSNISPTSVTVSWKPPSSGNGPITGYRVEYRSVNSTSDWQEVTV---------PGNETSYTITG-LQPGTTYE 70 (85)
T ss_dssp SSSEEEEEEEECSSEEEEEEEESSSTSSSESEEEEEEEETTSSSEEEEEEE---------ETTSSEEEEES-CCTTSEEE
T ss_pred CcCcCeEEEECCCCEEEEEEECCCCCCCCeeEEEEEEEecccceeeeeeee---------eeeeeeeeecc-CCCCCEEE
Confidence 36889999999999999999999877889999999999876654 332211 12345789999 99999999
Q ss_pred EEEEEecCCccCCCC
Q psy12060 858 FKVIAGNELGYGEPS 872 (978)
Q Consensus 858 ~~v~A~N~~G~g~~s 872 (978)
|+|+|.|..|.|++|
T Consensus 71 ~~v~a~~~~g~g~~S 85 (85)
T PF00041_consen 71 FRVRAVNSDGEGPPS 85 (85)
T ss_dssp EEEEEEETTEEEEEE
T ss_pred EEEEEEeCCcCcCCC
Confidence 999999999998764
No 200
>cd05753 Ig2_FcgammaR_like Second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins. Ig2_FcgammaR_like: domain similar to the second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.
Probab=99.05 E-value=5.2e-10 Score=90.56 Aligned_cols=71 Identities=23% Similarity=0.353 Sum_probs=55.9
Q ss_pred cccCcEEEEEEee-cCCCCeEEEEEcccccccccccccCCCCCCceEeecceEEEeCCCCCCCCeEEEEEEEeCceeEEe
Q psy12060 207 SILNDITLSCYAG-GYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVEDRGSYHCKASNKFGSIIS 285 (978)
Q Consensus 207 ~~g~~~~l~C~~~-g~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~d~G~Y~C~a~n~~g~~~s 285 (978)
.+|++++|+|.+. +.|.+.+.|||+|..+. +...++.|.|.++ +.+|+|.|+|.|.+..|...|
T Consensus 12 ~~G~~vtL~C~~~~~~~~~~~~w~k~g~~~~--------------~~~~~~~l~I~~~-~~~dsG~Y~C~~~~~~~~~~s 76 (83)
T cd05753 12 FEGEPLVLRCHGWKNKPVYKVTYYRDGKAKK--------------YSHSNSNLSIPQA-TLSDSGSYHCSGIIGSYDYSS 76 (83)
T ss_pred cCCCCEEEEeeCCCCCcceEEEEEECCeEcc--------------ccCCCceEEECcc-CHHHCEEEEEEEEeCCceecC
Confidence 3467799999985 46667999999985431 0113457999887 899999999999999998888
Q ss_pred EEEEEEE
Q psy12060 286 ESVQLAF 292 (978)
Q Consensus 286 ~~~~l~v 292 (978)
+.+.|+|
T Consensus 77 ~~~~i~~ 83 (83)
T cd05753 77 EPVSITV 83 (83)
T ss_pred CCEEEEC
Confidence 8887764
No 201
>cd04967 Ig1_Contactin First Ig domain of contactin. Ig1_Contactin: First Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 weeks postnata
Probab=99.05 E-value=2.2e-09 Score=89.42 Aligned_cols=83 Identities=30% Similarity=0.523 Sum_probs=62.2
Q ss_pred ceeeccCCccccc---CCCceeEEEEeecCCCCeeEEeECCEECCCCCCCCCCCCcEEEecCEEEEEeCCCCCCCeEEEE
Q psy12060 489 PNFTIPLTDKHMD---NQADLTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQDNVLTIRYLNPERDPAMYQC 565 (978)
Q Consensus 489 p~~~~~~~~~~~~---~g~~~~l~C~~~~~p~~~i~W~~~g~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~d~G~Y~C 565 (978)
|.|...+.+..+. .|+.+.|.|.+.|.|.++++|+|++..+... ...++....+.|.|.++...+|+|.|+|
T Consensus 2 P~f~~~p~~~~~~~~~~~~~~~l~C~~~g~p~p~i~W~k~~~~l~~~-----~~~~~~~~~~~L~i~~~~~~~d~G~Y~C 76 (91)
T cd04967 2 PVFEEQPDDTIFPEESDEGKVSLNCRARGSPPPTYRWLMNGTEIDDE-----PDSRYSLVGGNLVISNPSKAKDAGRYQC 76 (91)
T ss_pred CeeEeCCCCEEccCCCCCCEEEEEEeeeEcCCCEEEEEECCEECCCC-----CCCCEEEECCEEEEecCCccCCCEEEEE
Confidence 4444445544433 4467999999999999999999999988422 2345566778899988763379999999
Q ss_pred EEEcCCCceee
Q psy12060 566 RAKNQLKTRYS 576 (978)
Q Consensus 566 ~a~n~~g~~~~ 576 (978)
.|.|..|...+
T Consensus 77 ~a~N~~G~~~S 87 (91)
T cd04967 77 LASNIVGTVLS 87 (91)
T ss_pred EEEcCCCEEEe
Confidence 99999997543
No 202
>cd05861 Ig1_PDGFR-alphabeta Frst immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b). Ig1_PDGFR-alphabeta: The first immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b). PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFRalpha binds to all three PDGFs, whereas the PDGFRbeta binds only to PDGF-B. PDGFRs alpha and beta have similar organization: an extracellular component with five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFRalpha and PDGFRbeta are essential for normal development.
Probab=99.05 E-value=1.2e-09 Score=88.92 Aligned_cols=81 Identities=19% Similarity=0.287 Sum_probs=55.1
Q ss_pred cCcEEEEEEeecCCCCeEEEEEcccccccccccccCCCCCCceEeecceEEEeCCCCCCCCeEEEEEEEeCce-eEEeEE
Q psy12060 209 LNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVEDRGSYHCKASNKFG-SIISES 287 (978)
Q Consensus 209 g~~~~l~C~~~g~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~d~G~Y~C~a~n~~g-~~~s~~ 287 (978)
|++++|+|.+.|.|.+.+.|+++++........... ..........+|.|.++ +.+|+|.|.|.|+|..+ ...+.+
T Consensus 1 Ge~~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~~--~~~~~~~~~s~L~I~~~-~~~DsG~Y~C~a~n~~~~~~~~~s 77 (84)
T cd05861 1 GETITVNCIVQGNEVVDFSWTYPGKDIGKGIPEVEE--VKVPATTLRSTLTFPHA-TVEDSGTYECAAHESTQDQKAFKK 77 (84)
T ss_pred CCcEEEEEEEECCCccEEEEEECCccCCCCceEEEE--EecCCcEEEEEEEECCC-CcCCCEEEEEEEEECccCcceeEE
Confidence 678999999999999999999987643221100000 00001112458999998 99999999999998765 234566
Q ss_pred EEEEE
Q psy12060 288 VQLAF 292 (978)
Q Consensus 288 ~~l~v 292 (978)
+.|+|
T Consensus 78 v~i~V 82 (84)
T cd05861 78 VNITV 82 (84)
T ss_pred EEEEE
Confidence 66665
No 203
>cd05895 Ig_Pro_neuregulin-1 Immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1. Ig_Pro_neuregulin-1: immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1. There are many NRG-1 isoforms which arise from the alternative splicing of mRNA. NRG-1 belongs to the neuregulin gene family, which is comprised of four genes. This group represents NRG-1. NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, and heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. The NRG-1 protein binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates process
Probab=99.03 E-value=9e-10 Score=88.20 Aligned_cols=66 Identities=21% Similarity=0.465 Sum_probs=52.6
Q ss_pred EEEEEEEee-cCCCeeEEEEcCccCCCCc----eee----ecccEEEeCCCCCCCCeEEEEEEEeCCCceEEEEE
Q psy12060 417 VRLECVAFG-YPVPSYNWTRRGSPLPRNA----YFE----NFNRILTIPNVKVEDQGEYICRASNDRSALESSVT 482 (978)
Q Consensus 417 ~~l~C~~~g-~p~~~v~W~~~~~~l~~~~----~~~----~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~ 482 (978)
+.|.|.+.+ .|.+.++|+|++..+.... ++. .....|.|.++..+|+|.|+|.|.|..|..+.++.
T Consensus 1 ~~L~C~a~~~~p~~~~~W~~~g~~i~~~~~~~~~~~~~~~~~~~~L~I~~~~~~DsG~Y~C~a~N~~g~~~~~~~ 75 (76)
T cd05895 1 LVLRCETVSEYPSLRFKWFKNGKEIGAKNKPDNKIKIRKKKKSSELQISKASLADNGEYKCMVSSKLGNDSVTAN 75 (76)
T ss_pred CEEEEecccCCCCCceEEEECCcccccCCCCCceEEEEeCCcEEEEEECcCCcccCEEEEEEEEeCCCceeEEEe
Confidence 479999874 6888999999999885332 111 12467999999999999999999999998877664
No 204
>cd05750 Ig_Pro_neuregulin Immunoglobulin (Ig)-like domain in neuregulins (NRGs). Ig_Pro_neuregulin: immunoglobulin (Ig)-like domain in neuregulins (NRGs). NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. There are four members of the neuregulin gene family (NRG1, -2, -3, and -4). The NRG-1 protein, binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. The other NRGs proteins bind one or the other or both of these ErbBs. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates processes such as target cell differentiation, and Schwann cell surv
Probab=99.02 E-value=7.7e-10 Score=88.67 Aligned_cols=67 Identities=28% Similarity=0.565 Sum_probs=54.8
Q ss_pred EEEEEeecc-CCCCeeEEeeCCEEecCCCcEE---Ee---ecCcEEEccccCCCCEEEEEEEEeCCceeeeeEE
Q psy12060 606 VTIFCNPEA-APKPKFVWKKDGNIIGSGGRRK---IF---ENGNLLISPVSRDDSGIYSCTATNVHGMDESKGR 672 (978)
Q Consensus 606 ~~l~C~~~~-~p~~~i~W~~~g~~~~~~~~~~---~~---~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~ 672 (978)
+.|.|.+.| .|.|.+.|+|+|..+....+.. +. ..+.|.|.++..+|+|.|+|.|.|..|....++.
T Consensus 1 ~~l~C~~~g~~P~p~~~W~k~g~~l~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~ 74 (75)
T cd05750 1 LVLKCEATSEYPSLRFKWFKDGKELNRKNKPRNIKIRNKKKNSELQINKAKLADSGEYTCVVENILGNDTVTAN 74 (75)
T ss_pred CEEEEEccCCCCCceEEEEcCCeeccccCCcceEEEEecCceEEEEEccCCcccCeEEEEEEEEcCCceeEEEe
Confidence 469999999 8999999999999887654322 21 2346999999999999999999999999876654
No 205
>cd05754 Ig3_Perlecan_like Third immunoglobulin (Ig)-like domain found in Perlecan and similar proteins. Ig3_Perlecan_like: domain similar to the third immunoglobulin (Ig)-like domain found in Perlecan. Perlecan is a large multi-domain heparin sulfate proteoglycan, important in tissue development and organogenesis. Perlecan can be represented as 5 major portions; its fourth major portion (domain IV) is a tandem repeat of immunoglobulin-like domains (Ig2-Ig15), which can vary in size due to alternative splicing. Perlecan binds many cellular and extracellular ligands. Its domain IV region has many binding sites. Some of these have been mapped at the level of individual Ig-like domains, including a site restricted to the Ig5 domain for heparin/sulfatide, a site restricted to the Ig3 domain for nidogen-1 and nidogen-2, a site restricted to Ig4-5 for fibronectin, and sites restricted to Ig2 and to Ig13-15 for fibulin-2.
Probab=99.02 E-value=1.3e-09 Score=89.60 Aligned_cols=72 Identities=39% Similarity=0.639 Sum_probs=60.7
Q ss_pred CCCCCCcEEEEEEEee-cCCCeeEEEEcCccCCCCceeeecccEEEeCCCCCCCCeEEEEEEEeCCCceEEEEEE
Q psy12060 410 APKAGDKVRLECVAFG-YPVPSYNWTRRGSPLPRNAYFENFNRILTIPNVKVEDQGEYICRASNDRSALESSVTI 483 (978)
Q Consensus 410 ~v~~G~~~~l~C~~~g-~p~~~v~W~~~~~~l~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l 483 (978)
.+.+|++++|.|.+.+ .|.+.|.|++++..++... ...++.|.|.+++.+|+|.|+|.|.|..|....++.|
T Consensus 12 ~v~~G~~v~L~C~~~~~~~~~~i~W~~~~~~~~~~~--~~~~~~L~I~~v~~~DsG~Y~C~a~n~~g~~~~~~~l 84 (85)
T cd05754 12 EVRPGADVSFICRAKSKSPAYTLVWTRVGGGLPSRA--MDFNGILTIRNVQLSDAGTYVCTGSNMLDTDEATATL 84 (85)
T ss_pred EEcCCCCEEEEEEcCCCCCCcEEEEEECCCcCCCcc--cccCCEEEECCCCHHHCEEEEEEEeccCCeEeEEEEE
Confidence 4578999999999974 7888999999998765432 2335789999999999999999999999998887765
No 206
>cd05882 Ig1_Necl-1 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). Ig1_Necl-1: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-1, Necl-1 (also known as celll adhesion molecule 3 (CADM3), SynCAM2, IGSF4). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the format
Probab=99.02 E-value=1.4e-09 Score=90.12 Aligned_cols=76 Identities=24% Similarity=0.413 Sum_probs=56.2
Q ss_pred CCCCCCCCcEEEEEEEeecCCCeeEEEEcCccCC--------CCceee-----ecccEEEeCCCCCCCCeEEEEEEEeCC
Q psy12060 408 PEAPKAGDKVRLECVAFGYPVPSYNWTRRGSPLP--------RNAYFE-----NFNRILTIPNVKVEDQGEYICRASNDR 474 (978)
Q Consensus 408 ~~~v~~G~~~~l~C~~~g~p~~~v~W~~~~~~l~--------~~~~~~-----~~~~~L~i~~~~~~d~G~Y~C~a~n~~ 474 (978)
+..+.+|+++.|.|.+.+.|.|.|.|++++..+. ...++. .....|.|.++..+|+|.|+|.+...
T Consensus 6 ~~tv~~G~tv~L~C~v~g~~~~~v~W~k~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~nV~~~D~G~YtC~~~t~- 84 (95)
T cd05882 6 DETVAVGGTVTLKCGVKEHDNSSLQWSNTAQQTLYFGEKRALRDNRIQLVKSTPTELIISISNVQLSDEGEYTCSIFTM- 84 (95)
T ss_pred cEEEecCCcEEEEEEEeCCCCCeEEEeccCccEEEeCCeEEEeCCeEEEEeCCCceEEEEECCCCcccCEEEEEEEEee-
Confidence 3467799999999999999999999999876431 112221 12468999999999999999999872
Q ss_pred CceEEEEEEE
Q psy12060 475 SALESSVTIS 484 (978)
Q Consensus 475 g~~~~~~~l~ 484 (978)
-..++.+.|.
T Consensus 85 ~~~~~~~~~~ 94 (95)
T cd05882 85 PVRTAKATVT 94 (95)
T ss_pred ccccEEEEEE
Confidence 2344444444
No 207
>cd05757 Ig2_IL1R_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins. Ig2_IL1R_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three IG-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta. This group also contains ILIR-like 1 (IL1
Probab=99.02 E-value=8.2e-10 Score=90.80 Aligned_cols=77 Identities=21% Similarity=0.297 Sum_probs=61.5
Q ss_pred CCCCCCCcEEEEEEEee-----cCCCeeEEEEcCccCCCCceeeecccEEEeCCCCCCCCeEEEEEEEeCCCceEEEEEE
Q psy12060 409 EAPKAGDKVRLECVAFG-----YPVPSYNWTRRGSPLPRNAYFENFNRILTIPNVKVEDQGEYICRASNDRSALESSVTI 483 (978)
Q Consensus 409 ~~v~~G~~~~l~C~~~g-----~p~~~v~W~~~~~~l~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l 483 (978)
+.+.+|++..|.|...+ +|.|.+.|+|++.++.........+..|.|.++..+|+|.|+|.|.|..+.....++.
T Consensus 5 ~~~~~g~~~~l~Cp~~~~~~~~~~~p~i~Wyk~~~~i~~~~~~~~~~~~L~I~~v~~~DsG~YtC~~~n~~~~~~~~~t~ 84 (92)
T cd05757 5 QILFSTKGGKIVCPDLDDFKNENTLPPVQWYKDCKLLEGDRKRFVKGSKLLIQNVTEEDAGNYTCKLTFTHNGKQYNVTR 84 (92)
T ss_pred EEEeeccCCEEECCChHHccCCCCCCcEEEeECCEECCCCccEEecCCEEEEeeCChhhCEEEEEEEEecCCCEEEEEEE
Confidence 34568999999998753 3577999999999997655443367899999999999999999999998876655544
Q ss_pred EE
Q psy12060 484 SI 485 (978)
Q Consensus 484 ~V 485 (978)
.+
T Consensus 85 t~ 86 (92)
T cd05757 85 TI 86 (92)
T ss_pred EE
Confidence 43
No 208
>cd05873 Ig_Sema4D_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4D. Ig_Sema4D_like; Immunoglobulin (Ig)-like domain of Sema4D. Sema4D is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4D has extracellular Sema and Ig domains, a transmembrane domain, and a short cytoplasmic domain. Sema4D plays a part in the development of GABAergic synapses. Sema4D in addition is an immune semaphorin. It is abundant on resting T cells; its expression is weak on resting B cells and antigen presenting cells (APCs), but is upregulated by various stimuli. The receptor used by Sema4D in the immune system is CD72. Sem4D enhances the activation of B cells and DCs through binding CD72, perhaps by reducing CD72s inhibitory signals. The receptor used by Sema4D in the non-lymphatic tissues is plexin-B1. Sem4D is anchored to the cell surface but its extracellular domain can be released from the cell surface by a metalloproteas
Probab=99.02 E-value=2.7e-09 Score=85.85 Aligned_cols=68 Identities=25% Similarity=0.502 Sum_probs=56.8
Q ss_pred cceeecCCCeEEEEEeeccCCCCeeEEeeCCEEecCCCcEEEeecCcEEEccccCCCCEEEEEEEEeCC
Q psy12060 596 SETYAGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTATNVH 664 (978)
Q Consensus 596 ~~~~~~~g~~~~l~C~~~~~p~~~i~W~~~g~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~ 664 (978)
....+..|+++.|.|.+.+ +.+++.|+++|..+..+.......++.|.|.+++.+|+|.|+|.|.+..
T Consensus 4 ~~~~v~~G~~v~L~C~~~~-~~~~i~W~~ng~~i~~~~~r~~~~~~~L~I~nv~~~DsG~Y~C~a~e~~ 71 (87)
T cd05873 4 RQRTFKLGNNAELKCSPKS-NLARVVWKFDGKVLTPESAKYLLYRDGLLIFNASEADAGRYQCLSVEKS 71 (87)
T ss_pred ceEEEECCCCEEEEEECCC-CCCeEEEEECCEECCCCCceEEEECCcEEEeCCCHHHCEEEEEEEEecc
Confidence 3456889999999999865 6789999999999987643344567889999999999999999998763
No 209
>cd05752 Ig1_FcgammaR_like Frst immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins. Ig1_FcgammaR_like: domain similar to the first immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.
Probab=99.02 E-value=9.6e-10 Score=87.33 Aligned_cols=67 Identities=24% Similarity=0.516 Sum_probs=55.3
Q ss_pred ceeeccCCcccccCCCceeEEEEeecCCC-CeeEEeECCEECCCCCCCCCCCCcEEEecCEEEEEeCCCCCCCeEEEEEE
Q psy12060 489 PNFTIPLTDKHMDNQADLTWTCEAFGVPD-VTYSWFRNGELLNSETLPLEDQDRYFIQDNVLTIRYLNPERDPAMYQCRA 567 (978)
Q Consensus 489 p~~~~~~~~~~~~~g~~~~l~C~~~~~p~-~~i~W~~~g~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~d~G~Y~C~a 567 (978)
|.+...|....+.+|++++|+|.+.+.|. ..+.|+|||..+.. ..+.|.|.++ . +|+|.|+|.|
T Consensus 1 ~vv~~~P~~~~v~~G~~V~L~C~~~~~p~~~~~~W~kng~~l~~-------------~~~~l~i~~~-~-~dsG~Y~C~a 65 (78)
T cd05752 1 AVVSLDPPWTTIFQGEKVTLTCNGFNSPEQNSTQWYHNGKLLET-------------TTNSYRIRAA-N-NDSGEYRCQT 65 (78)
T ss_pred CeEEeCCCCeEeeCCCCEEEEEeCCCCCCCccEEEEECCEEeec-------------cCCeEEEeec-c-cCCEEeEEEC
Confidence 45666777788999999999999998774 57999999988731 2457889988 5 8999999999
Q ss_pred EcC
Q psy12060 568 KNQ 570 (978)
Q Consensus 568 ~n~ 570 (978)
.|.
T Consensus 66 ~~~ 68 (78)
T cd05752 66 QGS 68 (78)
T ss_pred CCC
Confidence 875
No 210
>cd05875 Ig6_hNeurofascin_like Sixth immunoglobulin (Ig)-like domain of human neurofascin (NF). Ig6_hNeurofascin_like: the sixth immunoglobulin (Ig)-like domain of human neurofascin (NF). NF belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and a cytoplasmic domain. NF has many alternatively spliced isoforms having different temporal expression patterns during development. NF participates in axon subcellular targeting and synapse formation, however little is known of the functions of the different isoforms.
Probab=99.02 E-value=2e-09 Score=85.69 Aligned_cols=65 Identities=29% Similarity=0.571 Sum_probs=51.6
Q ss_pred EEEEEeeccCCCCeeEEeeCCEEec--CCCcEEE-eecCcEEEcccc----CCCCEEEEEEEEeCCceeeee
Q psy12060 606 VTIFCNPEAAPKPKFVWKKDGNIIG--SGGRRKI-FENGNLLISPVS----RDDSGIYSCTATNVHGMDESK 670 (978)
Q Consensus 606 ~~l~C~~~~~p~~~i~W~~~g~~~~--~~~~~~~-~~~~~l~i~~~~----~~d~G~Y~C~a~n~~g~~~~~ 670 (978)
+.|.|.+.|.|.|.++|+|+|..+. .+.++.+ ..+++|.|..+. .+|+|.|+|.|.|..|...+.
T Consensus 1 ~~l~C~~~G~P~P~v~W~k~g~~~~~~~~~~~~~~~~~~~L~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~s~ 72 (77)
T cd05875 1 IIIECEAKGNPVPTFQWTRNGKFFNVAKDPRVSMRRRSGTLVIDFSGGGRPEDYEGEYQCFARNNLGTALSN 72 (77)
T ss_pred CEEEEeccccCCCEEEEEECCEEccCcCCCcEEEeCCCceEEEeccCCCCCCCCCEEEEEEEEeccceEEEE
Confidence 4699999999999999999998763 3444444 356789998764 357999999999999987654
No 211
>cd05729 Ig2_FGFR_like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor and similar proteins. Ig2_FGFR_like: domain similar to the second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three Ig-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin
Probab=98.99 E-value=2.2e-09 Score=88.79 Aligned_cols=75 Identities=27% Similarity=0.572 Sum_probs=62.1
Q ss_pred CCCCCcEEEEEEEeecCCCeeEEEEcCccCCCCceee-----ecccEEEeCCCCCCCCeEEEEEEEeCCCceEEEEEEEE
Q psy12060 411 PKAGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYFE-----NFNRILTIPNVKVEDQGEYICRASNDRSALESSVTISI 485 (978)
Q Consensus 411 v~~G~~~~l~C~~~g~p~~~v~W~~~~~~l~~~~~~~-----~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V 485 (978)
+..|+.++|.|.+.+.|.+.+.|++++..+....... .....|.|.++..+|+|.|.|.+.|..|..+.++.|.|
T Consensus 6 ~~~G~~~~l~C~~~~~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~n~~g~~~~~~~l~v 85 (85)
T cd05729 6 VPAGSTVRLKCPASGNPRPTITWLKDGKPFKKEHRIGGYKVRKKKWTLILESVVPSDSGKYTCIVENKYGSINHTYKVDV 85 (85)
T ss_pred ecCCCcEEEEEEcCCCCCCeEEEEECCEECcccCceeEEEccCcEEEEEEeECCcccCEEEEEEEEECCceEEEEEEEeC
Confidence 3579999999999999999999999998876443221 22357999999999999999999999999888887764
No 212
>cd07701 Ig1_Necl-3 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Ig1_Necl-3: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-3, Necl-3 (also known as cell adhesion molecule 2 (CADM2), SynCAM2, IGSF4D). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-3 accumulates in central and peripheral nervous system tissue, and has been shown to selectively interact with oligodendrocytes.
Probab=98.97 E-value=2.7e-09 Score=88.95 Aligned_cols=77 Identities=18% Similarity=0.306 Sum_probs=56.2
Q ss_pred CCCCCCCCcEEEEEEEeecCCCeeEEEEcC--------ccCCCCceee-----ecccEEEeCCCCCCCCeEEEEEEEeCC
Q psy12060 408 PEAPKAGDKVRLECVAFGYPVPSYNWTRRG--------SPLPRNAYFE-----NFNRILTIPNVKVEDQGEYICRASNDR 474 (978)
Q Consensus 408 ~~~v~~G~~~~l~C~~~g~p~~~v~W~~~~--------~~l~~~~~~~-----~~~~~L~i~~~~~~d~G~Y~C~a~n~~ 474 (978)
+..+.+|++++|.|.+.+.|.+.+.|++.+ .......++. ....+|.|.+++.+|+|.|+|.+.+..
T Consensus 6 ~v~v~eG~~v~L~C~~~~~p~~~v~W~~~~~~~l~~~~~~~~~~~r~~~~~~~~~~~sL~I~~v~~~DsG~Y~C~~~t~~ 85 (95)
T cd07701 6 NVTVVEGGTANLTCRVDQNDNTSLQWSNPAQQTLYFDDKKALRDNRIELVRASWHELSISISDVSLSDEGQYTCSLFTMP 85 (95)
T ss_pred eEEEecCCcEEEEEEEecCCceEEEEeCCCCeEEEEcCcccccCCCEEEEECCCCcEEEEECcCCcccCEEEEEEeEeec
Confidence 346779999999999999999999998632 2221222221 133689999999999999999999853
Q ss_pred CceEEEEEEEE
Q psy12060 475 SALESSVTISI 485 (978)
Q Consensus 475 g~~~~~~~l~V 485 (978)
..+..+.|.|
T Consensus 86 -~~~~~~~l~v 95 (95)
T cd07701 86 -VKTSKAYLTV 95 (95)
T ss_pred -CccEEEEEEC
Confidence 3356666654
No 213
>cd04979 Ig_Semaphorin_C Immunoglobulin (Ig)-like domain of semaphorin. Ig_Semaphorin_C; Immunoglobulin (Ig)-like domain in semaphorins. Semaphorins are transmembrane protein that have important roles in a variety of tissues. Functionally, semaphorins were initially characterized for their importance in the development of the nervous system and in axonal guidance. Later they have been found to be important for the formation and functioning of the cardiovascular, endocrine, gastrointestinal, hepatic, immune, musculoskeletal, renal, reproductive, and respiratory systems. Semaphorins function through binding to their receptors and transmembrane semaphorins also serves as receptors themselves. Although molecular mechanism of semaphorins is poorly understood, the Ig-like domains may involve in ligand binding or dimerization.
Probab=98.96 E-value=2.9e-09 Score=88.28 Aligned_cols=77 Identities=23% Similarity=0.383 Sum_probs=60.8
Q ss_pred CCCCCCcEEEEEEEeecCCCeeEEEEcCccCCCC----ceeeecccEEEeCCCCCCCCeEEEEEEEeCC-CceEEEEEEE
Q psy12060 410 APKAGDKVRLECVAFGYPVPSYNWTRRGSPLPRN----AYFENFNRILTIPNVKVEDQGEYICRASNDR-SALESSVTIS 484 (978)
Q Consensus 410 ~v~~G~~~~l~C~~~g~p~~~v~W~~~~~~l~~~----~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~-g~~~~~~~l~ 484 (978)
.+.+|+++.|.|.+.+ |.+.+.|+|++..+... .+.......|.|.+++.+|+|.|+|.|.+.. +....++.|.
T Consensus 7 ~v~~g~~v~L~C~~~~-p~~~i~W~k~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~~~~~~~~~~~~~l~ 85 (89)
T cd04979 7 TVVEGNSVFLECSPKS-NLASVVWLFQGGPLQRKEEPEERLLVTEDGLLIRSVSPADAGVYTCQSVEHGFKQTLATYSLN 85 (89)
T ss_pred EEECCCcEEEEEeCCC-CCceEEEEECCcccccccCcCceEEEcCCCEEEccCCHHHCEEEEEEEecCccceeEeEEEEE
Confidence 4568999999999887 78899999999887654 2344444569999999999999999999764 4456667777
Q ss_pred EEe
Q psy12060 485 IQA 487 (978)
Q Consensus 485 V~~ 487 (978)
|.+
T Consensus 86 V~~ 88 (89)
T cd04979 86 VLE 88 (89)
T ss_pred Eec
Confidence 753
No 214
>cd05742 Ig1_VEGFR_like First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor (R) and similar proteins. Ig1_VEGFR_like: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R) related proteins. The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF-A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF
Probab=98.96 E-value=2.8e-09 Score=87.26 Aligned_cols=73 Identities=21% Similarity=0.360 Sum_probs=57.6
Q ss_pred CCeEEEEEeeccC--CCCeeEEeeCCEEecCCCcE----E----EeecCcEEEccccCCCCEEEEEEEEeCCceeeeeEE
Q psy12060 603 GGNVTIFCNPEAA--PKPKFVWKKDGNIIGSGGRR----K----IFENGNLLISPVSRDDSGIYSCTATNVHGMDESKGR 672 (978)
Q Consensus 603 g~~~~l~C~~~~~--p~~~i~W~~~g~~~~~~~~~----~----~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~ 672 (978)
|++++|.|.+.+. |.+.++|.+++..+...... . ....++|.|.+++.+|+|.|+|.|.|..|....+..
T Consensus 1 Ge~~~L~C~~~g~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~v~~~DsG~Y~C~a~n~~~~~~~s~~ 80 (84)
T cd05742 1 GETLVLNCTVLTELNEGVDFQWTYPGKKRGRGKSMVTRQSLSEATELSSTLTIPNATLKDSGTYTCAASSGTMDQKESTK 80 (84)
T ss_pred CCeEEEEEEEEeCCCccEEEEEecCCcccCCceEeecccccccceEEEEEEEECCCChhhCEEEEEEEccCCCceEEEEE
Confidence 7899999999999 78899999887654322110 0 012346999999999999999999999999888887
Q ss_pred EEE
Q psy12060 673 LIV 675 (978)
Q Consensus 673 l~v 675 (978)
|.|
T Consensus 81 v~v 83 (84)
T cd05742 81 VNI 83 (84)
T ss_pred EEE
Confidence 765
No 215
>cd05885 Ig2_Necl-4 Second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4)). Ig2_Necl-4: second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1-Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Ig domains are likely to participate in ligand binding and recognition. Necl-4 is expressed on Schwann cells, and plays a key part in initiating peripheral nervous system (PNS) myelination. In injured peripheral nerve cells, the mRNA signal for both Necl-4 and Necl-5 was observed to be elevated. Necl-4 participates in cell-cell adhesion and is proposed to play a role in tumor suppression.
Probab=98.96 E-value=3.5e-09 Score=82.99 Aligned_cols=66 Identities=14% Similarity=0.323 Sum_probs=49.3
Q ss_pred EEEEEEee-cCCCCeEEEEEcccccccccccccCCCCCCceEeecceEEEeCCCCCCCCeEEEEEEEeCcee
Q psy12060 212 ITLSCYAG-GYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVEDRGSYHCKASNKFGS 282 (978)
Q Consensus 212 ~~l~C~~~-g~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~d~G~Y~C~a~n~~g~ 282 (978)
+.|+|.+. |+|+++|+||||+.++..... ....+..+ ...++|.|... +.+|++.|+|+|.|..+.
T Consensus 2 ~~L~C~s~~skP~a~i~W~k~~~~l~~~~~---~~~~~~~~-t~~s~L~~~~~-~~Ddg~~~~C~A~n~a~~ 68 (80)
T cd05885 2 VELTCLSPRSKPAATLRWYRDRKELKGVIS---QQENGKTV-SVSNTIRFPVD-RKDDGAILSCEASHPALV 68 (80)
T ss_pred EEEEEeCCCccCCCeEEEEECCEECCCCcc---cccCCceE-EEEEEEEEEee-eccCCcEEEEEEEChhhC
Confidence 79999985 899999999999988754211 11122222 24567888776 899999999999999875
No 216
>cd05753 Ig2_FcgammaR_like Second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins. Ig2_FcgammaR_like: domain similar to the second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.
Probab=98.92 E-value=2.2e-09 Score=86.88 Aligned_cols=71 Identities=24% Similarity=0.423 Sum_probs=56.0
Q ss_pred CCCCCCcEEEEEEEe-ecCCCeeEEEEcCccCCCCceeeecccEEEeCCCCCCCCeEEEEEEEeCCCce-EEEEEEE
Q psy12060 410 APKAGDKVRLECVAF-GYPVPSYNWTRRGSPLPRNAYFENFNRILTIPNVKVEDQGEYICRASNDRSAL-ESSVTIS 484 (978)
Q Consensus 410 ~v~~G~~~~l~C~~~-g~p~~~v~W~~~~~~l~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~-~~~~~l~ 484 (978)
.|.+|++++|.|.+. +.+.+++.|+|++..+... ..+..|.|.+++.+|+|.|+|.+.+..+.. +..+.|+
T Consensus 10 ~V~~G~~vtL~C~~~~~~~~~~~~w~k~g~~~~~~----~~~~~l~I~~~~~~dsG~Y~C~~~~~~~~~~s~~~~i~ 82 (83)
T cd05753 10 VVFEGEPLVLRCHGWKNKPVYKVTYYRDGKAKKYS----HSNSNLSIPQATLSDSGSYHCSGIIGSYDYSSEPVSIT 82 (83)
T ss_pred eecCCCCEEEEeeCCCCCcceEEEEEECCeEcccc----CCCceEEECccCHHHCEEEEEEEEeCCceecCCCEEEE
Confidence 567999999999985 4566789999999877532 235689999999999999999999988753 3345544
No 217
>PF13895 Ig_2: Immunoglobulin domain; PDB: 2V5R_B 2V5M_A 2V5S_B 2GI7_A 3LAF_A 4DEP_C 3O4O_B 2EC8_A 2E9W_A 1J87_A ....
Probab=98.91 E-value=1.1e-08 Score=83.32 Aligned_cols=79 Identities=33% Similarity=0.581 Sum_probs=58.6
Q ss_pred CeeEeCCCceEecCCCccccCcEEEEEEeecCCCCeEEEEEcccccccccccccCCCCCCceEeecceEEEeCCCCCCCC
Q psy12060 190 PYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVEDR 269 (978)
Q Consensus 190 P~~~~~p~~~~~~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~d~ 269 (978)
|.|...|.. + .+|+.++|+|.+.+.|.+.+.|++++..+. ...+.|.|.++ +.+|+
T Consensus 2 P~l~~~~~~--v-----~~g~~~~l~C~~~~~p~~~~~w~~~~~~~~----------------~~~~~~~~~~~-~~~~~ 57 (80)
T PF13895_consen 2 PVLSSSPQS--V-----EEGDSVTLTCSVSGNPPPQVQWYKNGSPIN----------------SSQNGLFIPNV-SPEDS 57 (80)
T ss_dssp -EEEEESSE--E-----ETTSEEEEEEEEESSSSSEEEEEETTEEEE----------------EESSEEEESSE-EGGGT
T ss_pred cEEEccceE--E-----eCCCcEEEEEEEEcccceeeeeeeeeeeee----------------eeeeeeeeeee-ccccC
Confidence 566665522 2 346779999999999999999999875432 11122666665 89999
Q ss_pred eEEEEEEEeCceeEEeEEEEEEE
Q psy12060 270 GSYHCKASNKFGSIISESVQLAF 292 (978)
Q Consensus 270 G~Y~C~a~n~~g~~~s~~~~l~v 292 (978)
|.|+|.|.+..+...+.+++|+|
T Consensus 58 g~y~C~~~~~~~~~~s~~~~v~V 80 (80)
T PF13895_consen 58 GNYTCRASNGSGSNTSTSVNVTV 80 (80)
T ss_dssp EEEEEEEEETTEEEEEEEEEEEE
T ss_pred EEEEEEEEeCCCCeEeeeEEeeC
Confidence 99999999988877778887765
No 218
>cd05754 Ig3_Perlecan_like Third immunoglobulin (Ig)-like domain found in Perlecan and similar proteins. Ig3_Perlecan_like: domain similar to the third immunoglobulin (Ig)-like domain found in Perlecan. Perlecan is a large multi-domain heparin sulfate proteoglycan, important in tissue development and organogenesis. Perlecan can be represented as 5 major portions; its fourth major portion (domain IV) is a tandem repeat of immunoglobulin-like domains (Ig2-Ig15), which can vary in size due to alternative splicing. Perlecan binds many cellular and extracellular ligands. Its domain IV region has many binding sites. Some of these have been mapped at the level of individual Ig-like domains, including a site restricted to the Ig5 domain for heparin/sulfatide, a site restricted to the Ig3 domain for nidogen-1 and nidogen-2, a site restricted to Ig4-5 for fibronectin, and sites restricted to Ig2 and to Ig13-15 for fibulin-2.
Probab=98.90 E-value=6.7e-09 Score=85.28 Aligned_cols=74 Identities=30% Similarity=0.526 Sum_probs=60.8
Q ss_pred ceeecCCCeEEEEEeecc-CCCCeeEEeeCCEEecCCCcEEEeecCcEEEccccCCCCEEEEEEEEeCCceeeeeEEE
Q psy12060 597 ETYAGEGGNVTIFCNPEA-APKPKFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTATNVHGMDESKGRL 673 (978)
Q Consensus 597 ~~~~~~g~~~~l~C~~~~-~p~~~i~W~~~g~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l 673 (978)
...+.+|++++|.|.+.+ .|.+.+.|++++..+... ....++.|.|.+++.+|+|.|+|.|.|..|.....+.|
T Consensus 10 ~~~v~~G~~v~L~C~~~~~~~~~~i~W~~~~~~~~~~---~~~~~~~L~I~~v~~~DsG~Y~C~a~n~~g~~~~~~~l 84 (85)
T cd05754 10 SQEVRPGADVSFICRAKSKSPAYTLVWTRVGGGLPSR---AMDFNGILTIRNVQLSDAGTYVCTGSNMLDTDEATATL 84 (85)
T ss_pred ceEEcCCCCEEEEEEcCCCCCCcEEEEEECCCcCCCc---ccccCCEEEECCCCHHHCEEEEEEEeccCCeEeEEEEE
Confidence 344789999999999975 678899999988765432 22346789999999999999999999999999887765
No 219
>PF05473 Herpes_UL45: UL45 protein; InterPro: IPR008646 This family consists several UL45 proteins and homologues found in the herpes simplex virus family. The herpes simplex virus UL45 gene encodes an 18 kDa virion envelope protein whose function remains unknown. It has been suggested that the 18 kDa UL45 gene product is required for efficient growth in the central nervous system at low doses and may play an important role under the conditions of a naturally acquired infection []. The Equine herpesvirus 1 UL45 protein represents a type II membrane glycoprotein which has found to be non-essential for EHV-1 growth in vitro but deletion reduces the viruses' replication efficiency [].
Probab=98.90 E-value=4.1e-09 Score=99.44 Aligned_cols=101 Identities=30% Similarity=0.401 Sum_probs=71.8
Q ss_pred ccccccccceeccCeeEEEEccCCCCHHHHHHHhhhcCCeeeeeCChhhHHHHHHHhhccCCCCceEEEEeecCCCccEE
Q psy12060 25 LELRCPQHWVQYRDSCYRFVKSPLKTRNDAKLNCKSLDSDLANVNDADEHGFIMYQLFWQDPQRRKWYFGGTQQSPNLWV 104 (978)
Q Consensus 25 ~~~~Cp~~w~~~~~~Cy~~~~~~~~~~~~A~~~C~~~~~~L~~i~~~~e~~~i~~~~~~~~~~~~~w~g~~~~~~~~~w~ 104 (978)
....||++|..|++.||+|+..++++|.||+..|++++++|+...+.....++.+.... ....+|.-.
T Consensus 81 ~~~~CP~~Wi~~~~~Cy~~~~~~~~t~~eA~~~C~~~~s~L~~~~~~~~L~~ll~~~~~--~~~~~~~~~---------- 148 (200)
T PF05473_consen 81 GCGPCPKGWIGYNNSCYRFSNSPKKTWEEARNICAAYNSTLANVNNAKSLLELLDVLNN--WSGEYWWNF---------- 148 (200)
T ss_pred cCCCCCccceeeCCEEEEEeCCCCcCHHHHHHHHHhcCCcCCCchhHHHHHHHHHHhcc--cCcCCccee----------
Confidence 56789999999999999999997339999999999999999999988877676665421 112233321
Q ss_pred EcCCCCCCcccccCCCCCCCcccCceEEEEecccccceeeeecCCCcceeeEEEec
Q psy12060 105 NEDGTNLNELDAAFLPEPADNVQRDYLAYSFSQSLKRWGFERVTGMEPLLFICEAS 160 (978)
Q Consensus 105 w~dg~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~C~~~ 160 (978)
..+++..+|........ .+.+ |.....++|+..
T Consensus 149 -----------------~~~d~~~~C~~~~~~~~----~~~d--C~~~~~~IC~~~ 181 (200)
T PF05473_consen 149 -----------------RNDDSIYNCIRPSDGVS----IIED--CSKTATVICYSP 181 (200)
T ss_pred -----------------ECCCchhheeeeccCcc----cccc--cCCcceEEEcCC
Confidence 11112346665544421 2344 999999999983
No 220
>smart00408 IGc2 Immunoglobulin C-2 Type.
Probab=98.89 E-value=6.7e-09 Score=80.08 Aligned_cols=63 Identities=41% Similarity=0.758 Sum_probs=53.4
Q ss_pred CCCcEEEEEEEeecCCCeeEEEEcCccCCCCceeeecccEEEeCCCCCCCCeEEEEEEEeCCC
Q psy12060 413 AGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYFENFNRILTIPNVKVEDQGEYICRASNDRS 475 (978)
Q Consensus 413 ~G~~~~l~C~~~g~p~~~v~W~~~~~~l~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g 475 (978)
+|++++|.|.+.+.|.+.+.|++++..+............|.|.++..+|+|.|+|.+.|..|
T Consensus 1 ~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~n~~g 63 (63)
T smart00408 1 EGQSVTLTCPAEGDPVPNITWLKDGKPLPESNRLSASGSTLTIKSVSLEDSGEYTCVAENSAG 63 (63)
T ss_pred CCceEEEEeeCccCCCCeEEEEECCEECCCCCEEecCCcEEEEeeCCcccCEEEEEEEecCCC
Confidence 489999999988899999999999988874333444567899999999999999999998754
No 221
>cd05757 Ig2_IL1R_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins. Ig2_IL1R_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three IG-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta. This group also contains ILIR-like 1 (IL1
Probab=98.89 E-value=8.3e-09 Score=84.88 Aligned_cols=76 Identities=22% Similarity=0.358 Sum_probs=61.4
Q ss_pred eecCCCeEEEEEeeccC-----CCCeeEEeeCCEEecCCCcEEEeecCcEEEccccCCCCEEEEEEEEeCCceeeeeEEE
Q psy12060 599 YAGEGGNVTIFCNPEAA-----PKPKFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTATNVHGMDESKGRL 673 (978)
Q Consensus 599 ~~~~g~~~~l~C~~~~~-----p~~~i~W~~~g~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l 673 (978)
.+..|++..|.|...+. |.|.+.|+|++.++....+.. ..++.|.|.++..+|+|.|+|.|.|..+.....+..
T Consensus 6 ~~~~g~~~~l~Cp~~~~~~~~~~~p~i~Wyk~~~~i~~~~~~~-~~~~~L~I~~v~~~DsG~YtC~~~n~~~~~~~~~t~ 84 (92)
T cd05757 6 ILFSTKGGKIVCPDLDDFKNENTLPPVQWYKDCKLLEGDRKRF-VKGSKLLIQNVTEEDAGNYTCKLTFTHNGKQYNVTR 84 (92)
T ss_pred EEeeccCCEEECCChHHccCCCCCCcEEEeECCEECCCCccEE-ecCCEEEEeeCChhhCEEEEEEEEecCCCEEEEEEE
Confidence 46789999999987542 567999999999987655433 367789999999999999999999998887766544
Q ss_pred EE
Q psy12060 674 IV 675 (978)
Q Consensus 674 ~v 675 (978)
.+
T Consensus 85 t~ 86 (92)
T cd05757 85 TI 86 (92)
T ss_pred EE
Confidence 43
No 222
>cd05729 Ig2_FGFR_like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor and similar proteins. Ig2_FGFR_like: domain similar to the second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three Ig-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin
Probab=98.88 E-value=1.8e-08 Score=83.20 Aligned_cols=77 Identities=26% Similarity=0.459 Sum_probs=62.2
Q ss_pred eecCCCeEEEEEeeccCCCCeeEEeeCCEEecCCCcEEEee----cCcEEEccccCCCCEEEEEEEEeCCceeeeeEEEE
Q psy12060 599 YAGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFE----NGNLLISPVSRDDSGIYSCTATNVHGMDESKGRLI 674 (978)
Q Consensus 599 ~~~~g~~~~l~C~~~~~p~~~i~W~~~g~~~~~~~~~~~~~----~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~ 674 (978)
.+..|+.+.|.|.+.+.|.+.+.|++++..+.......... ...|.|.++..+|.|.|+|.|.|..|....++.|.
T Consensus 5 ~~~~G~~~~l~C~~~~~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~n~~g~~~~~~~l~ 84 (85)
T cd05729 5 AVPAGSTVRLKCPASGNPRPTITWLKDGKPFKKEHRIGGYKVRKKKWTLILESVVPSDSGKYTCIVENKYGSINHTYKVD 84 (85)
T ss_pred EecCCCcEEEEEEcCCCCCCeEEEEECCEECcccCceeEEEccCcEEEEEEeECCcccCEEEEEEEEECCceEEEEEEEe
Confidence 36689999999999999999999999998876543332211 12589999999999999999999999987777665
Q ss_pred E
Q psy12060 675 V 675 (978)
Q Consensus 675 v 675 (978)
|
T Consensus 85 v 85 (85)
T cd05729 85 V 85 (85)
T ss_pred C
Confidence 3
No 223
>cd05871 Ig_Semaphorin_classIII Immunoglobulin (Ig)-like domain of class III semaphorin. Ig_Semaphorin_class III; Immunoglobulin (Ig)-like domain of class III semaphorins. Semaphorins are classified into various classes on the basis of structural features additional to the Sema domain. Class III semaphorins are a vertebrate class having a Sema domain, an Ig domain, a short basic domain, and are secreted. They have been shown to be axonal guidance cues and have a part in the regulation of the cardiovascular, immune and respiratory systems. Sema3A, the prototype member of this class III subfamily, induces growth cone collapse and is an inhibitor of axonal sprouting. In perinatal rat cortex as a chemoattractant, it functions to direct, for pyramidal neurons, the orientated extension of apical dendrites. It may play a role, prior to the development of apical dendrites, in signaling the radial migration of newborn cortical neurons towards the upper layers. Sema3A selectively inhibits vascula
Probab=98.88 E-value=9.9e-09 Score=84.52 Aligned_cols=76 Identities=20% Similarity=0.314 Sum_probs=57.3
Q ss_pred CCCCCcEEEEEEEeecCCCeeEEEEcCc--c----CCCCceeeecccEEEeCCCCCCCCeEEEEEEEe-CCCceEEEEEE
Q psy12060 411 PKAGDKVRLECVAFGYPVPSYNWTRRGS--P----LPRNAYFENFNRILTIPNVKVEDQGEYICRASN-DRSALESSVTI 483 (978)
Q Consensus 411 v~~G~~~~l~C~~~g~p~~~v~W~~~~~--~----l~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n-~~g~~~~~~~l 483 (978)
+.+|++++|.|.. +.|.|.+.|+|++. . +....+.....+.|.|.+++.+|+|.|+|.|.+ ..+.....+.|
T Consensus 8 ~~eG~~v~L~C~~-~~p~p~v~Wykq~~g~~~~~~~~~~~r~~~~~~~L~I~~~~~~DsG~Y~C~a~~~~~~~~~~~~~l 86 (91)
T cd05871 8 GVENNSTFLECLP-KSPQASVKWLFQRGGDQRKEEVKTEERLIHTERGLLLRSLQRSDAGVYTCTAVEHSFSQTLAKYTL 86 (91)
T ss_pred EecCCcEEEEEEC-CCCCceEEEEEECCCCCccccccccccEEEecCeEEEeeCChhHCEEEEEEEEccCCeEEEEEEEE
Confidence 4689999999986 57889999998432 2 112233444556799999999999999999984 55656667888
Q ss_pred EEEe
Q psy12060 484 SIQA 487 (978)
Q Consensus 484 ~V~~ 487 (978)
.|..
T Consensus 87 ~v~~ 90 (91)
T cd05871 87 HVIE 90 (91)
T ss_pred EEec
Confidence 7754
No 224
>cd05885 Ig2_Necl-4 Second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4)). Ig2_Necl-4: second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1-Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Ig domains are likely to participate in ligand binding and recognition. Necl-4 is expressed on Schwann cells, and plays a key part in initiating peripheral nervous system (PNS) myelination. In injured peripheral nerve cells, the mRNA signal for both Necl-4 and Necl-5 was observed to be elevated. Necl-4 participates in cell-cell adhesion and is proposed to play a role in tumor suppression.
Probab=98.87 E-value=4.7e-09 Score=82.24 Aligned_cols=74 Identities=18% Similarity=0.221 Sum_probs=54.0
Q ss_pred eEEEeCCCCCCCCceEEEeccccccccccc---ceEEEeeCCcEEEeeeeeecceeeEEEEEeecccccccCCceeE
Q psy12060 313 KAMFCDPPTNYPGVNYYWARDYFPNFVEED---KRVFVSYDGALYFSALEQIDAGNYSCNVQSKVSDTGRNGPFFPL 386 (978)
Q Consensus 313 ~~l~C~~~~~~p~~~i~W~~~~~~~~~~~~---~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~n~~~~~~~~~~~~~l 386 (978)
+.|+|....+.|+++|+|||++.++..... ..-.....++|.|.....+|.+.|+|+|.|..+..+.......|
T Consensus 2 ~~L~C~s~~skP~a~i~W~k~~~~l~~~~~~~~~~~~~t~~s~L~~~~~~~Ddg~~~~C~A~n~a~~~~~~~~~~~l 78 (80)
T cd05885 2 VELTCLSPRSKPAATLRWYRDRKELKGVISQQENGKTVSVSNTIRFPVDRKDDGAILSCEASHPALVSQKKQTQYSL 78 (80)
T ss_pred EEEEEeCCCccCCCeEEEEECCEECCCCcccccCCceEEEEEEEEEEeeeccCCcEEEEEEEChhhCCCCeeEEEEE
Confidence 679999999999999999999988643211 11112234579999999999999999999998765443333333
No 225
>cd05895 Ig_Pro_neuregulin-1 Immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1. Ig_Pro_neuregulin-1: immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1. There are many NRG-1 isoforms which arise from the alternative splicing of mRNA. NRG-1 belongs to the neuregulin gene family, which is comprised of four genes. This group represents NRG-1. NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, and heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. The NRG-1 protein binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates process
Probab=98.87 E-value=5.4e-09 Score=83.65 Aligned_cols=67 Identities=30% Similarity=0.539 Sum_probs=52.2
Q ss_pred EEEEEeecc-CCCCeeEEeeCCEEecCCC----cEEEe---ecCcEEEccccCCCCEEEEEEEEeCCceeeeeEE
Q psy12060 606 VTIFCNPEA-APKPKFVWKKDGNIIGSGG----RRKIF---ENGNLLISPVSRDDSGIYSCTATNVHGMDESKGR 672 (978)
Q Consensus 606 ~~l~C~~~~-~p~~~i~W~~~g~~~~~~~----~~~~~---~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~ 672 (978)
+.|.|.+.+ .|.+.+.|+++|..+.... ++.+. ..++|.|.++..+|+|.|+|.|.|..|....++.
T Consensus 1 ~~L~C~a~~~~p~~~~~W~~~g~~i~~~~~~~~~~~~~~~~~~~~L~I~~~~~~DsG~Y~C~a~N~~g~~~~~~~ 75 (76)
T cd05895 1 LVLRCETVSEYPSLRFKWFKNGKEIGAKNKPDNKIKIRKKKKSSELQISKASLADNGEYKCMVSSKLGNDSVTAN 75 (76)
T ss_pred CEEEEecccCCCCCceEEEECCcccccCCCCCceEEEEeCCcEEEEEECcCCcccCEEEEEEEEeCCCceeEEEe
Confidence 469999875 6778999999999886432 12222 1246999999999999999999999998877654
No 226
>cd05898 Ig5_KIRREL3 Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2). Ig5_KIRREL3: the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1). These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development. Neph1 and 2 may mediate axonal guidance and synapse formation in certain areas of the CNS. In the kidney, they participate in the formation of the slit diaphragm.
Probab=98.87 E-value=1.4e-08 Score=83.75 Aligned_cols=75 Identities=21% Similarity=0.377 Sum_probs=59.7
Q ss_pred CCCCCCCcEEEEEEEeecCCC-eeEEEEcCccCCCC--ceee--------ecccEEEeCCCCCCC-CeEEEEEEEeCCCc
Q psy12060 409 EAPKAGDKVRLECVAFGYPVP-SYNWTRRGSPLPRN--AYFE--------NFNRILTIPNVKVED-QGEYICRASNDRSA 476 (978)
Q Consensus 409 ~~v~~G~~~~l~C~~~g~p~~-~v~W~~~~~~l~~~--~~~~--------~~~~~L~i~~~~~~d-~G~Y~C~a~n~~g~ 476 (978)
+.+.+|++++|.|.+.+.|+| .|.|.+++..|... .++. ...+.|.|.++...| .|.|.|.|.|..|.
T Consensus 11 ~~~~~G~~~~L~C~~~s~P~P~~i~W~w~~~~i~~~~~~r~~I~~~~~~~g~~S~L~I~~~~~~d~~g~Y~C~a~N~~G~ 90 (98)
T cd05898 11 QYAVRGERGKVKCFIGSTPPPDRIAWAWKENVLESGTSERYTVERTSTGSGVLSTLTINNIMEADFQTHYNCTAWNSFGS 90 (98)
T ss_pred EEEeCCCcEEEEEEEccCCCCcEEEEEEccccccCCCCCCEEEEEEccCCCcEEEEEECCCccccCCcEEEEEEEeCCcc
Confidence 456799999999999888877 68999988877543 1221 134679999998767 79999999999999
Q ss_pred eEEEEEE
Q psy12060 477 LESSVTI 483 (978)
Q Consensus 477 ~~~~~~l 483 (978)
....+.|
T Consensus 91 d~~~i~L 97 (98)
T cd05898 91 GTAIIQL 97 (98)
T ss_pred ceEEEEe
Confidence 9888776
No 227
>cd05862 Ig1_VEGFR First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R). IG1_VEGFR: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF_A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angioge
Probab=98.86 E-value=1.3e-08 Score=83.06 Aligned_cols=74 Identities=27% Similarity=0.455 Sum_probs=57.2
Q ss_pred CCcEEEEEEEeecCC--CeeEEEEcCccCCCCc-----ee-----eecccEEEeCCCCCCCCeEEEEEEEeCCCceEEEE
Q psy12060 414 GDKVRLECVAFGYPV--PSYNWTRRGSPLPRNA-----YF-----ENFNRILTIPNVKVEDQGEYICRASNDRSALESSV 481 (978)
Q Consensus 414 G~~~~l~C~~~g~p~--~~v~W~~~~~~l~~~~-----~~-----~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~ 481 (978)
|++++|.|.+.+.+. ..+.|.+.+..+.... +. ....++|.|.+++.+|+|.|+|.|.|..|....++
T Consensus 1 Ge~~~L~C~~~~~~~~~~~~~W~~p~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~~~~~DsG~Y~C~a~n~~~~~~~~t 80 (86)
T cd05862 1 GEKLVLNCTARTELNVGIDFQWDYPGKKEQRAKSVSENRRSLQEHTELSSTLTIENVTLSDLGRYTCTASSGQMIAKNST 80 (86)
T ss_pred CCcEEEEEEEEeCCCCcEEEEEEcCCcccccceecccccccccccceeeeEEEEecCCcccCEEEEEEEeecceEecccE
Confidence 789999999987654 4789998776442111 00 12346899999999999999999999998888888
Q ss_pred EEEEEe
Q psy12060 482 TISIQA 487 (978)
Q Consensus 482 ~l~V~~ 487 (978)
.|.|++
T Consensus 81 ~~~V~~ 86 (86)
T cd05862 81 IVIVHE 86 (86)
T ss_pred EEEEeC
Confidence 888863
No 228
>cd05898 Ig5_KIRREL3 Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2). Ig5_KIRREL3: the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1). These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development. Neph1 and 2 may mediate axonal guidance and synapse formation in certain areas of the CNS. In the kidney, they participate in the formation of the slit diaphragm.
Probab=98.86 E-value=2.4e-08 Score=82.41 Aligned_cols=78 Identities=27% Similarity=0.445 Sum_probs=62.0
Q ss_pred cceeecCCCeEEEEEeeccCCCC-eeEEeeCCEEecCC--CcEEEeec-------CcEEEccccCCC-CEEEEEEEEeCC
Q psy12060 596 SETYAGEGGNVTIFCNPEAAPKP-KFVWKKDGNIIGSG--GRRKIFEN-------GNLLISPVSRDD-SGIYSCTATNVH 664 (978)
Q Consensus 596 ~~~~~~~g~~~~l~C~~~~~p~~-~i~W~~~g~~~~~~--~~~~~~~~-------~~l~i~~~~~~d-~G~Y~C~a~n~~ 664 (978)
....+.+|+++.|.|.+.+.|+| .|.|..++..+..+ .++.+... ..|.|.++...| .|.|.|.|.|..
T Consensus 9 ~s~~~~~G~~~~L~C~~~s~P~P~~i~W~w~~~~i~~~~~~r~~I~~~~~~~g~~S~L~I~~~~~~d~~g~Y~C~a~N~~ 88 (98)
T cd05898 9 QVQYAVRGERGKVKCFIGSTPPPDRIAWAWKENVLESGTSERYTVERTSTGSGVLSTLTINNIMEADFQTHYNCTAWNSF 88 (98)
T ss_pred ceEEEeCCCcEEEEEEEccCCCCcEEEEEEccccccCCCCCCEEEEEEccCCCcEEEEEECCCccccCCcEEEEEEEeCC
Confidence 34457899999999999888887 78898887776543 46655432 249999998766 799999999999
Q ss_pred ceeeeeEEE
Q psy12060 665 GMDESKGRL 673 (978)
Q Consensus 665 g~~~~~~~l 673 (978)
|.+...++|
T Consensus 89 G~d~~~i~L 97 (98)
T cd05898 89 GSGTAIIQL 97 (98)
T ss_pred ccceEEEEe
Confidence 999877765
No 229
>KOG0196|consensus
Probab=98.85 E-value=1.5e-07 Score=102.47 Aligned_cols=133 Identities=17% Similarity=0.264 Sum_probs=103.2
Q ss_pred CCceEEEeccCCCCCEEEEEEEEcCCCce------eeeEEEEE-cCCCCCCCceEEEEeeCCeeEEEeecCCCCCCCcee
Q psy12060 738 DGGLLEITNASFADAGEYECVVKSTVGKI------STKTTVIV-EGPPGLPGGVQVVEVHKTSATIQWTDGATNGRPITH 810 (978)
Q Consensus 738 ~~~~l~i~~~~~~d~g~Y~c~a~n~~G~~------s~~~~l~v-~~~P~~P~~~~~~~~~~~~v~l~W~~p~~~~~~i~~ 810 (978)
....+++.++...-.++|...|.|.+... .+.+.++. +..|.+...++....+.++++|+|..|...++.|..
T Consensus 396 t~~~V~v~~L~ah~~YTFeV~AvNgVS~lsp~~~~~a~vnItt~qa~ps~V~~~r~~~~~~~sitlsW~~p~~png~ild 475 (996)
T KOG0196|consen 396 TETSVTVSDLLAHTNYTFEVEAVNGVSDLSPFPRQFASVNITTNQAAPSPVSVLRQVSRTSDSITLSWSEPDQPNGVILD 475 (996)
T ss_pred ccceEEEeccccccccEEEEEEeecccccCCCCCcceeEEeeccccCCCccceEEEeeeccCceEEecCCCCCCCCccee
Confidence 35688899998888888889999976532 23333333 345666668899999999999999999988888999
Q ss_pred EEEEEeeccc--cCceEecccccceeeeecCCceeeEEeeccCCCceeEEEEEEecCCccCCCCCCCCCCCCCCC
Q psy12060 811 YKIIARTNWN--STWFNVSEHVIGKEVDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPSPQYNTPAD 883 (978)
Q Consensus 811 Y~v~~~~~~~--~~w~~~~~~~~~~~~~~~~~~~~~~~~~~L~p~~~Y~~~v~A~N~~G~g~~s~~~~~~~t~~~ 883 (978)
|.|.|..... ....... ...+..++.+ |.|++.|.|+|+|...+|.|++|... .|+|.+.
T Consensus 476 YEvky~ek~~~e~~~~~~~-----------t~~~~~ti~g-L~p~t~YvfqVRarT~aG~G~~S~~~-~fqT~~~ 537 (996)
T KOG0196|consen 476 YEVKYYEKDEDERSYSTLK-----------TKTTTATITG-LKPGTVYVFQVRARTAAGYGPYSGKH-EFQTLPS 537 (996)
T ss_pred EEEEEeeccccccceeEEe-----------cccceEEeec-cCCCcEEEEEEEEecccCCCCCCCce-eeeecCc
Confidence 9999988643 2222221 1345678999 99999999999999999999999988 7777654
No 230
>cd05871 Ig_Semaphorin_classIII Immunoglobulin (Ig)-like domain of class III semaphorin. Ig_Semaphorin_class III; Immunoglobulin (Ig)-like domain of class III semaphorins. Semaphorins are classified into various classes on the basis of structural features additional to the Sema domain. Class III semaphorins are a vertebrate class having a Sema domain, an Ig domain, a short basic domain, and are secreted. They have been shown to be axonal guidance cues and have a part in the regulation of the cardiovascular, immune and respiratory systems. Sema3A, the prototype member of this class III subfamily, induces growth cone collapse and is an inhibitor of axonal sprouting. In perinatal rat cortex as a chemoattractant, it functions to direct, for pyramidal neurons, the orientated extension of apical dendrites. It may play a role, prior to the development of apical dendrites, in signaling the radial migration of newborn cortical neurons towards the upper layers. Sema3A selectively inhibits vascula
Probab=98.84 E-value=2.4e-08 Score=82.20 Aligned_cols=79 Identities=22% Similarity=0.330 Sum_probs=54.5
Q ss_pred ccCcEEEEEEeecCCCCeEEEEEcccccccccccccCCCCCCceEeecceEEEeCCCCCCCCeEEEEEEEe-CceeEEeE
Q psy12060 208 ILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVEDRGSYHCKASN-KFGSIISE 286 (978)
Q Consensus 208 ~g~~~~l~C~~~g~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~d~G~Y~C~a~n-~~g~~~s~ 286 (978)
+|+.++|.|.. +.|.|.+.|||++...... .. .....++...++.|.|.++ +.+|+|.|+|.|.+ ..+.. ..
T Consensus 10 eG~~v~L~C~~-~~p~p~v~Wykq~~g~~~~--~~--~~~~~r~~~~~~~L~I~~~-~~~DsG~Y~C~a~~~~~~~~-~~ 82 (91)
T cd05871 10 ENNSTFLECLP-KSPQASVKWLFQRGGDQRK--EE--VKTEERLIHTERGLLLRSL-QRSDAGVYTCTAVEHSFSQT-LA 82 (91)
T ss_pred cCCcEEEEEEC-CCCCceEEEEEECCCCCcc--cc--ccccccEEEecCeEEEeeC-ChhHCEEEEEEEEccCCeEE-EE
Confidence 47789999997 4888999999964321100 00 0123466667788999998 99999999999984 55533 34
Q ss_pred EEEEEEe
Q psy12060 287 SVQLAFG 293 (978)
Q Consensus 287 ~~~l~v~ 293 (978)
.++|.|.
T Consensus 83 ~~~l~v~ 89 (91)
T cd05871 83 KYTLHVI 89 (91)
T ss_pred EEEEEEe
Confidence 6666653
No 231
>cd07701 Ig1_Necl-3 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Ig1_Necl-3: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-3, Necl-3 (also known as cell adhesion molecule 2 (CADM2), SynCAM2, IGSF4D). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-3 accumulates in central and peripheral nervous system tissue, and has been shown to selectively interact with oligodendrocytes.
Probab=98.84 E-value=1.9e-08 Score=83.83 Aligned_cols=80 Identities=23% Similarity=0.386 Sum_probs=58.5
Q ss_pred CcceeecCCCeEEEEEeeccCCCCeeEEeeCC--------EEecCCCcEEEee----cCcEEEccccCCCCEEEEEEEEe
Q psy12060 595 ESETYAGEGGNVTIFCNPEAAPKPKFVWKKDG--------NIIGSGGRRKIFE----NGNLLISPVSRDDSGIYSCTATN 662 (978)
Q Consensus 595 ~~~~~~~~g~~~~l~C~~~~~p~~~i~W~~~g--------~~~~~~~~~~~~~----~~~l~i~~~~~~d~G~Y~C~a~n 662 (978)
...+.+.+|++++|.|.+.+.|.+.+.|++.+ .....+.++.... ..+|.|.+++.+|+|.|+|.+.+
T Consensus 4 ~~~v~v~eG~~v~L~C~~~~~p~~~v~W~~~~~~~l~~~~~~~~~~~r~~~~~~~~~~~sL~I~~v~~~DsG~Y~C~~~t 83 (95)
T cd07701 4 TQNVTVVEGGTANLTCRVDQNDNTSLQWSNPAQQTLYFDDKKALRDNRIELVRASWHELSISISDVSLSDEGQYTCSLFT 83 (95)
T ss_pred cceEEEecCCcEEEEEEEecCCceEEEEeCCCCeEEEEcCcccccCCCEEEEECCCCcEEEEECcCCcccCEEEEEEeEe
Confidence 34567899999999999999999999998632 2222334554422 23699999999999999999998
Q ss_pred CCceeeeeEEEEE
Q psy12060 663 VHGMDESKGRLIV 675 (978)
Q Consensus 663 ~~g~~~~~~~l~v 675 (978)
. ......+.|.|
T Consensus 84 ~-~~~~~~~~l~v 95 (95)
T cd07701 84 M-PVKTSKAYLTV 95 (95)
T ss_pred e-cCccEEEEEEC
Confidence 4 33355566553
No 232
>cd05727 Ig2_Contactin-2-like Second Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins. Ig2_Contactin-2-like: second Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.
Probab=98.83 E-value=9.3e-09 Score=83.92 Aligned_cols=70 Identities=31% Similarity=0.537 Sum_probs=56.4
Q ss_pred eeecCCCeEEEEEee-ccCCCCeeEEeeCCEEe--cCCCcEEEe-ecCcEEEccccCCCCEEEEEEEEeCCcee
Q psy12060 598 TYAGEGGNVTIFCNP-EAAPKPKFVWKKDGNII--GSGGRRKIF-ENGNLLISPVSRDDSGIYSCTATNVHGMD 667 (978)
Q Consensus 598 ~~~~~g~~~~l~C~~-~~~p~~~i~W~~~g~~~--~~~~~~~~~-~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~ 667 (978)
..+.+|+.+.|.|.. .|.|.+.+.|++++..+ ..+.+..+. .+|.|.|.+++.+|+|.|+|.|+|.....
T Consensus 13 ~~v~eG~~~~L~C~pP~g~P~p~~~W~k~~~~~~~~~d~r~~~~~~~G~L~fs~v~~~D~g~Y~C~A~n~~~~~ 86 (96)
T cd05727 13 VKVKEGWGVVLFCDPPPHYPDLSYRWLLNEFPNFIPEDGRRFVSQTNGNLYIAKVEASDRGNYSCFVSSPSSTK 86 (96)
T ss_pred eeeeeCCcEEEeeCCCCCCCCCEEEEEECCcccccccCCCeEEeCCCCcEEEeecCHhhCceeEEEEEecccCC
Confidence 457899999999975 67899999999998754 233444444 47999999999999999999999976544
No 233
>cd05882 Ig1_Necl-1 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). Ig1_Necl-1: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-1, Necl-1 (also known as celll adhesion molecule 3 (CADM3), SynCAM2, IGSF4). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the format
Probab=98.83 E-value=3.1e-08 Score=82.12 Aligned_cols=78 Identities=19% Similarity=0.353 Sum_probs=57.3
Q ss_pred cceeecCCCeEEEEEeeccCCCCeeEEeeCCEEe--------cCCCcEEEee----cCcEEEccccCCCCEEEEEEEEeC
Q psy12060 596 SETYAGEGGNVTIFCNPEAAPKPKFVWKKDGNII--------GSGGRRKIFE----NGNLLISPVSRDDSGIYSCTATNV 663 (978)
Q Consensus 596 ~~~~~~~g~~~~l~C~~~~~p~~~i~W~~~g~~~--------~~~~~~~~~~----~~~l~i~~~~~~d~G~Y~C~a~n~ 663 (978)
.+..+..|+++.|.|.+.+.|.+.|.|++++..+ ..+.++.+.. ..+|.|.++..+|+|.|+|.+..
T Consensus 5 ~~~tv~~G~tv~L~C~v~g~~~~~v~W~k~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~nV~~~D~G~YtC~~~t- 83 (95)
T cd05882 5 QDETVAVGGTVTLKCGVKEHDNSSLQWSNTAQQTLYFGEKRALRDNRIQLVKSTPTELIISISNVQLSDEGEYTCSIFT- 83 (95)
T ss_pred ccEEEecCCcEEEEEEEeCCCCCeEEEeccCccEEEeCCeEEEeCCeEEEEeCCCceEEEEECCCCcccCEEEEEEEEe-
Confidence 4566889999999999999999999999877532 1223443321 24699999999999999999987
Q ss_pred CceeeeeEEEE
Q psy12060 664 HGMDESKGRLI 674 (978)
Q Consensus 664 ~g~~~~~~~l~ 674 (978)
.-...+.+.|.
T Consensus 84 ~~~~~~~~~~~ 94 (95)
T cd05882 84 MPVRTAKATVT 94 (95)
T ss_pred eccccEEEEEE
Confidence 23333444443
No 234
>smart00408 IGc2 Immunoglobulin C-2 Type.
Probab=98.76 E-value=4.2e-08 Score=75.52 Aligned_cols=63 Identities=40% Similarity=0.679 Sum_probs=52.5
Q ss_pred CCCeEEEEEeeccCCCCeeEEeeCCEEecCCCcEEEeecCcEEEccccCCCCEEEEEEEEeCCc
Q psy12060 602 EGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTATNVHG 665 (978)
Q Consensus 602 ~g~~~~l~C~~~~~p~~~i~W~~~g~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g 665 (978)
+|+++.|.|.+.+.|.+.+.|++++..+. ...........|.|.++..+|+|.|+|.+.|..|
T Consensus 1 ~g~~~~l~C~~~~~~~~~v~W~~~~~~~~-~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~n~~g 63 (63)
T smart00408 1 EGQSVTLTCPAEGDPVPNITWLKDGKPLP-ESNRLSASGSTLTIKSVSLEDSGEYTCVAENSAG 63 (63)
T ss_pred CCceEEEEeeCccCCCCeEEEEECCEECC-CCCEEecCCcEEEEeeCCcccCEEEEEEEecCCC
Confidence 48899999999888899999999998877 3333334456799999999999999999998765
No 235
>cd05845 Ig2_L1-CAM_like Second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins. Ig2_L1-CAM_like: domain similar to the second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.
Probab=98.75 E-value=1.9e-08 Score=81.94 Aligned_cols=70 Identities=29% Similarity=0.419 Sum_probs=59.7
Q ss_pred cceeecCCCeEEEEEe-eccCCCCeeEEeeCCEE-ecCCCcEEEeecCcEEEccccCCCCE-EEEEEEEeCCc
Q psy12060 596 SETYAGEGGNVTIFCN-PEAAPKPKFVWKKDGNI-IGSGGRRKIFENGNLLISPVSRDDSG-IYSCTATNVHG 665 (978)
Q Consensus 596 ~~~~~~~g~~~~l~C~-~~~~p~~~i~W~~~g~~-~~~~~~~~~~~~~~l~i~~~~~~d~G-~Y~C~a~n~~g 665 (978)
..+.+.+|+.+.|.|. ..|.|.|.|.|++++.. +..+.|+.+..+|+|.|.+++.+|+| .|.|.|.|...
T Consensus 11 ~~v~V~eG~~~~L~C~pP~g~P~P~i~W~~~~~~~i~~~~Ri~~~~~GnL~fs~v~~~D~g~~Y~C~a~~~~~ 83 (95)
T cd05845 11 RPVEVEEGDSVVLPCNPPKSAVPLRIYWMNSDLLHITQDERVSMGQNGNLYFANVEEQDSHPDYICHAHFPGL 83 (95)
T ss_pred ceeEEecCCCEEEEecCCCCCCCCEEEEECCCCccccccccEEECCCceEEEEEEehhhCCCCeEEEEEcccc
Confidence 4466889999999997 69999999999987654 44567777777899999999999999 79999998753
No 236
>cd05751 Ig1_LILRB1_like First immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1) and similar proteins. Ig1_LILRB1_like: domain similar to the first immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1). This group includes, LILRA5 (LIR9), an activating natural cytotoxicity receptor NKp46, and the immune-type receptor glycoprotein VI (GPVI). LILRs are a family of immunoreceptors expressed on expressed on T and B cells, on monocytes, dendritic cells, and subgroups of natural killer (NK) cells. The human LILR family contains nine proteins (LILRA1-3,and 5, and LILRB1-5). From functional assays, and as the cytoplasmic domains of various LILRs, for example LILRB1 (LIR-1), LILRB2 (LIR-2), and LILRB3 (LIR-3) contain immunoreceptor tyrosine-based inhibitory motifs (ITIMs) it is thought that LIR proteins are inhibitory receptors. Of the eight LIR family proteins, only LIR-1(LILRB1), and LIR-2 (LILRB2),
Probab=98.72 E-value=4.8e-08 Score=80.95 Aligned_cols=87 Identities=21% Similarity=0.321 Sum_probs=60.2
Q ss_pred CCeeEeCCCceEecCCCccccCcEEEEEEeecCCCCeEEEEEcccccccccccccCCCCCCceEeecceEEEeCCCCCCC
Q psy12060 189 GPYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVED 268 (978)
Q Consensus 189 ~P~~~~~p~~~~~~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~d 268 (978)
.|.|.+.|...+ ..|++|+|+|... .+...+.|+|+|..... + ........+.|.|.++ +.+|
T Consensus 2 kP~L~a~p~~vV------~~G~~VtL~C~~~-~~~~~f~l~k~g~~~~~----~-----~~~~~~~~~~f~i~~v-~~~~ 64 (91)
T cd05751 2 KPSLWAEPSSVV------PLGKPVTLRCQGP-YGAVEYRLYREGSTFAV----K-----KPPEPQNKAKFFIPSM-KREH 64 (91)
T ss_pred CCEEEecCCCcc------CCCCcEEEEEecC-CCCCEEEEEECCCCccc----c-----ccCCCceeEEEEccCC-ChhH
Confidence 478888886543 3567799999887 66789999999864211 0 0011123456888887 8999
Q ss_pred CeEEEEEEEeCc--eeEEeEEEEEEE
Q psy12060 269 RGSYHCKASNKF--GSIISESVQLAF 292 (978)
Q Consensus 269 ~G~Y~C~a~n~~--g~~~s~~~~l~v 292 (978)
+|.|+|++.+.. .+..|+.+.|.|
T Consensus 65 ~G~Y~C~~~~~~~~~S~~Sd~lel~V 90 (91)
T cd05751 65 AGRYRCYYRSGVALWSEPSDPLELVV 90 (91)
T ss_pred CEEEEEEEECCCCccCCCCCcEEEEe
Confidence 999999999863 244566666655
No 237
>cd05717 Ig1_Necl-1-3_like First (N-terminal) immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-3 (also known as cell adhesion molecules CADM3, CADM1, and CADM2 respectively). Ig1_Necl-1-3_like: N-terminal immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), and Necl-3 (CADM2). At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1, Necl-2, and Necl-3 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the form
Probab=98.72 E-value=7.1e-08 Score=81.14 Aligned_cols=76 Identities=18% Similarity=0.348 Sum_probs=54.4
Q ss_pred CCCCCCCcEEEEEEEeecCCCeeEEEEcCccC--------CCCceee-----ecccEEEeCCCCCCCCeEEEEEEEeCCC
Q psy12060 409 EAPKAGDKVRLECVAFGYPVPSYNWTRRGSPL--------PRNAYFE-----NFNRILTIPNVKVEDQGEYICRASNDRS 475 (978)
Q Consensus 409 ~~v~~G~~~~l~C~~~g~p~~~v~W~~~~~~l--------~~~~~~~-----~~~~~L~i~~~~~~d~G~Y~C~a~n~~g 475 (978)
..+.+|++++|.|.+.+.+.+.+.|++.+..+ ....++. .....|.|.+++.+|+|.|+|.+.+..
T Consensus 7 ~~v~~G~~v~L~C~~~~~~~~~v~W~~p~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~~~- 85 (95)
T cd05717 7 VTVVEGGTATLKCRVKNNDNSSLQWSNPNQQTLYFNDKRALRDNRIQLVNFSANELSISISNVSLSDEGRYTCSLYTMP- 85 (95)
T ss_pred EEEcCCCCEEEEEEECCCCCceEEEeCCCCcEEEeccccccccCcEEEEcCCCCeeEEEEccCCcccCEEEEEEEecCC-
Confidence 35679999999999988888899998633221 0112221 123579999999999999999999764
Q ss_pred ceEEEEEEEE
Q psy12060 476 ALESSVTISI 485 (978)
Q Consensus 476 ~~~~~~~l~V 485 (978)
..++.+.|+|
T Consensus 86 ~~~~~~~~~v 95 (95)
T cd05717 86 VQTAKATVTV 95 (95)
T ss_pred CceEEEEEEC
Confidence 3455666654
No 238
>KOG4258|consensus
Probab=98.71 E-value=3.2e-08 Score=107.71 Aligned_cols=129 Identities=16% Similarity=0.155 Sum_probs=87.9
Q ss_pred eeEEeeccCCCceeEEEEEEecCCcc----CCCCCCCCCCCCCCC-CCCCCCCceeeccc-ccCcEEEEEEeCCCCCCCC
Q psy12060 843 EASIENVLVPWSTYEFKVIAGNELGY----GEPSSPSPQYNTPAD-KPYQAPSRIGGGGG-KIGDLSISWEPLPREKQNA 916 (978)
Q Consensus 843 ~~~~~~~L~p~~~Y~~~v~A~N~~G~----g~~s~~~~~~~t~~~-~P~~~P~~~~~~~~-~~~si~v~W~~p~~~~~~g 916 (978)
++.+.+ |.+++.|.+.+.|.|.++. |..+.. ..+|.+. .-...|..+..... +.+++.|+|.+ |..+||
T Consensus 783 ~~vi~~-Lrh~tlY~i~l~aCnh~~~~~~cS~a~~v--~~RT~~~~~aD~i~g~v~we~~~~~~~v~l~w~E--P~~pNG 857 (1025)
T KOG4258|consen 783 SYVISG-LRHFTLYRIDLQACNHATPKCGCSHAAFV--FARTMPTMGADDIPGPVTWECHIEMNSVILRWLE--PKEPNG 857 (1025)
T ss_pred hhhhhc-cccchhhhhhHhhhcccccccccchhhhh--hhccccccccccCCCceeEecccCcceEEEecCC--CCCCCc
Confidence 456778 9999999999999999987 443332 2233322 11122333444433 78899999998 778999
Q ss_pred CcceEEEEEEecCCccceeeeeeeccceeEEEEEcCCCCceeeEEEEEEEecCCCCCCCCCC
Q psy12060 917 PNIYYKIFWRKKNDTEFQSETLKEYGNVGIAVVRIPSEFYYTEYEVKVQAINDVGPGPESEV 978 (978)
Q Consensus 917 ~i~~Y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~p~t~Y~~~V~A~n~~G~gp~S~~ 978 (978)
-|.+|.|.|+..+...-.-...... -...--+.|..|.|| .|.++|+|..-+|.|++.++
T Consensus 858 li~~Y~Vk~r~~~~et~v~cvsR~~-~~k~~gv~l~~l~~G-~y~~~vratSlaGng~~t~~ 917 (1025)
T KOG4258|consen 858 LILNYEVKYRRNGDETHVECVSRMD-YAKAGGVYLKRLNPG-NYSVRVRATSLAGNGSWTES 917 (1025)
T ss_pred cEEEEEEEEeeccCcchhhhhhhhh-hhhcCceEEEecCCC-cEEEEEEEEeeccCCCCcCC
Confidence 9999999999877543322211111 111122457788886 89999999999999999863
No 239
>PF13895 Ig_2: Immunoglobulin domain; PDB: 2V5R_B 2V5M_A 2V5S_B 2GI7_A 3LAF_A 4DEP_C 3O4O_B 2EC8_A 2E9W_A 1J87_A ....
Probab=98.70 E-value=3e-08 Score=80.78 Aligned_cols=70 Identities=40% Similarity=0.747 Sum_probs=56.3
Q ss_pred CCCCCCcEEEEEEEeecCCCeeEEEEcCccCCCCceeeecccEEEeCCCCCCCCeEEEEEEEeCCC-ceEEEEEEEE
Q psy12060 410 APKAGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYFENFNRILTIPNVKVEDQGEYICRASNDRS-ALESSVTISI 485 (978)
Q Consensus 410 ~v~~G~~~~l~C~~~g~p~~~v~W~~~~~~l~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g-~~~~~~~l~V 485 (978)
.+.+|++++|.|.+.+.|.+++.|++++..+... ...|.|.++..+|+|.|+|.+.+..+ ..+.++.|.|
T Consensus 10 ~v~~g~~~~l~C~~~~~p~~~~~w~~~~~~~~~~------~~~~~~~~~~~~~~g~y~C~~~~~~~~~~s~~~~v~V 80 (80)
T PF13895_consen 10 SVEEGDSVTLTCSVSGNPPPQVQWYKNGSPINSS------QNGLFIPNVSPEDSGNYTCRASNGSGSNTSTSVNVTV 80 (80)
T ss_dssp EEETTSEEEEEEEEESSSSSEEEEEETTEEEEEE------SSEEEESSEEGGGTEEEEEEEEETTEEEEEEEEEEEE
T ss_pred EEeCCCcEEEEEEEEcccceeeeeeeeeeeeeee------eeeeeeeeeccccCEEEEEEEEeCCCCeEeeeEEeeC
Confidence 4678999999999999988999999998777522 12278899999999999999999654 4556666655
No 240
>cd05897 Ig2_IL1R2_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2). Ig2_IL1R2_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds the type II (IL1R2) represented in this group. Mature IL1R2 consists of three IG-like domains, a transmembrane domain, and a short cytoplasmic domain. It lacks the large cytoplasmic domain of Mature IL1R1, and does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.
Probab=98.70 E-value=3.7e-08 Score=80.64 Aligned_cols=69 Identities=17% Similarity=0.267 Sum_probs=53.4
Q ss_pred CCCCCCCcEEEEEEE-ee----cCCCeeEEEEcCccCCCCce-eee--cccEEEeCCCCCCCCeEEEEEEEeCCCce
Q psy12060 409 EAPKAGDKVRLECVA-FG----YPVPSYNWTRRGSPLPRNAY-FEN--FNRILTIPNVKVEDQGEYICRASNDRSAL 477 (978)
Q Consensus 409 ~~v~~G~~~~l~C~~-~g----~p~~~v~W~~~~~~l~~~~~-~~~--~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~ 477 (978)
+.+.+|.+..|.|.- .+ .+.++|+||||+.+|..... +.. ....|.|.++..+|+|.|+|.|.+..|..
T Consensus 5 ~~~~~~~~~~l~Cp~~~~f~~~~~~~~v~WYKd~~~l~~~~~~~~~~~~~~~L~I~~v~~~D~G~YtC~~~~~~~g~ 81 (95)
T cd05897 5 QILFTSTSGKLVCPDLSDFTINRTDVELQWYKDSVLLDKDNEKFYSLKGSTYLHIIDVSLNDSGYYTCKLQFTHEGK 81 (95)
T ss_pred eEeccccCcEEECCCHHHcccCCCCCcEEEccCCEECcCCCcceEecCCCCEEEEEEcChhhCEEEEEEEEEeeCCE
Confidence 345689999999962 23 46679999999999874432 222 34679999999999999999999987654
No 241
>cd05862 Ig1_VEGFR First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R). IG1_VEGFR: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF_A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angioge
Probab=98.69 E-value=1.1e-07 Score=77.68 Aligned_cols=82 Identities=24% Similarity=0.338 Sum_probs=60.1
Q ss_pred cccEEEEEEeeecCCcCeEEEEeeCCEEccccccccc---cCCeeecCCceEEEeccCCCCCEEEEEEEEcCCCceeeeE
Q psy12060 694 HRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNEL---ETPNINIDGGLLEITNASFADAGEYECVVKSTVGKISTKT 770 (978)
Q Consensus 694 g~~~~l~C~~~~~p~~~~~~~W~~~g~~~~~~~~~~~---~~~~~~~~~~~l~i~~~~~~d~g~Y~c~a~n~~G~~s~~~ 770 (978)
|+.+.|.|.+.+++.+.+.+.|.+.+........... .........+.|.|.+++.+|+|.|+|.|.|..|....+.
T Consensus 1 Ge~~~L~C~~~~~~~~~~~~~W~~p~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~~~~~DsG~Y~C~a~n~~~~~~~~t 80 (86)
T cd05862 1 GEKLVLNCTARTELNVGIDFQWDYPGKKEQRAKSVSENRRSLQEHTELSSTLTIENVTLSDLGRYTCTASSGQMIAKNST 80 (86)
T ss_pred CCcEEEEEEEEeCCCCcEEEEEEcCCcccccceecccccccccccceeeeEEEEecCCcccCEEEEEEEeecceEecccE
Confidence 6789999999998888889999887764321110000 0000011246899999999999999999999999988888
Q ss_pred EEEEc
Q psy12060 771 TVIVE 775 (978)
Q Consensus 771 ~l~v~ 775 (978)
.|.|.
T Consensus 81 ~~~V~ 85 (86)
T cd05862 81 IVIVH 85 (86)
T ss_pred EEEEe
Confidence 88875
No 242
>cd05896 Ig1_IL1RAPL-1_like First immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1). Ig1_ IL1RAPL-1_like: domain similar to the first immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1). IL-1 alpha and IL-1 beta are cytokines which participates in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of
Probab=98.69 E-value=6.5e-08 Score=78.99 Aligned_cols=76 Identities=18% Similarity=0.353 Sum_probs=57.5
Q ss_pred CCCCCCcEEEEEEEe------e-----cCCCeeEEEEcCccCCCC-------ceeeecccEEEeCCCCCCCCeEEEEEEE
Q psy12060 410 APKAGDKVRLECVAF------G-----YPVPSYNWTRRGSPLPRN-------AYFENFNRILTIPNVKVEDQGEYICRAS 471 (978)
Q Consensus 410 ~v~~G~~~~l~C~~~------g-----~p~~~v~W~~~~~~l~~~-------~~~~~~~~~L~i~~~~~~d~G~Y~C~a~ 471 (978)
.+.+||.+.|.|... + .+...+.|+|++..+... .++...+..|.|.++..+|+|.|+|++.
T Consensus 11 ~~~~GE~v~l~C~~~~~~~~~~~~~~~~~~~~v~WyK~~~~~~~~~~~~~~~~Ri~~~~~~Lwf~Pa~~eDSG~Y~C~~r 90 (104)
T cd05896 11 MVLAGEPVRIKCALFYGYIRTNYSMAQSAGLSLMWYKSSGDGEEPIEIIFDGVRMSKEEDSIWFRPAELQDSGLYTCVLR 90 (104)
T ss_pred EEcCCCeEEEECCCccccccccccccccCCceEEEEECCCCCCCCCcccccceeEEEeCCEEEEEeCChhhCeEEEEEEC
Confidence 456999999999851 1 112379999997555432 2455567889999999999999999999
Q ss_pred eCCCceEEEEEEEE
Q psy12060 472 NDRSALESSVTISI 485 (978)
Q Consensus 472 n~~g~~~~~~~l~V 485 (978)
|.......++.|+|
T Consensus 91 N~t~C~~~~i~l~V 104 (104)
T cd05896 91 NSTYCMKVSMSLTV 104 (104)
T ss_pred CCCcceEEEEEEEC
Confidence 98777777776654
No 243
>cd05860 Ig4_SCFR Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR). Ig4_SCFR: The fourth Immunoglobulin (Ig)-like domain in stem cell factor receptor (SCFR). SCFR is organized as an extracellular component having five IG-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR. This fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth domain abolishes the ligand-induced dimerization of SCFR and completely inhibits signal transduction.
Probab=98.68 E-value=1.3e-07 Score=77.09 Aligned_cols=78 Identities=18% Similarity=0.309 Sum_probs=64.2
Q ss_pred CCCCCCCcEEEEEEEeecCCCe-eEEEEcCccCCCCce--ee-------ecccEEEeCCCCCCCCeEEEEEEEeCCCceE
Q psy12060 409 EAPKAGDKVRLECVAFGYPVPS-YNWTRRGSPLPRNAY--FE-------NFNRILTIPNVKVEDQGEYICRASNDRSALE 478 (978)
Q Consensus 409 ~~v~~G~~~~l~C~~~g~p~~~-v~W~~~~~~l~~~~~--~~-------~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~ 478 (978)
..|.+|+++.|.|.+.++|+|+ +.|.+++..+..... .. ...+.|.+..++.+|+|.|+|.|.|.....+
T Consensus 13 ~~v~~gE~~~L~V~ieAYP~p~~~~W~~~~~~l~~~~~~~~~~~~~~~~rY~S~L~L~Rlk~~E~G~YTf~a~N~~~~~s 92 (101)
T cd05860 13 IFVNAGENLDLIVEYEAYPKPEHQQWIYMNRTLTNTSDHYVKSRNESNNRYVSELHLTRLKGTEGGTYTFLVSNSDASAS 92 (101)
T ss_pred EEEECCCCEEEEEEEEeCCCCeeeEEEcCCcccCccccceeEEeccCceEEEEEEEEeecChhhCcEEEEEEECCCCeEE
Confidence 4567999999999999999997 999999886643221 11 1236799999999999999999999999988
Q ss_pred EEEEEEEE
Q psy12060 479 SSVTISIQ 486 (978)
Q Consensus 479 ~~~~l~V~ 486 (978)
.++.|.|.
T Consensus 93 ~tF~l~v~ 100 (101)
T cd05860 93 VTFNVYVN 100 (101)
T ss_pred EEEEEEEe
Confidence 88888774
No 244
>cd07690 Ig1_CD4 First immunoglobulin (Ig) domain of CD4. Ig1_CD4; first immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy.
Probab=98.68 E-value=5.5e-08 Score=79.87 Aligned_cols=75 Identities=19% Similarity=0.296 Sum_probs=50.0
Q ss_pred cccCcEEEEEEeecCCCCeEEEEEccccc--cccccccc--CCCCCCceEe-----e--cceEEEeCCCCCCCCeEEEEE
Q psy12060 207 SILNDITLSCYAGGYPNPSYEWFKEDYVQ--DRLVANLI--DPLSDKRFTL-----S--GGNLIINDPRQVEDRGSYHCK 275 (978)
Q Consensus 207 ~~g~~~~l~C~~~g~p~~~v~W~~~~~~~--~~~~~~~~--~~~~~~~~~~-----~--~~~l~i~~~~~~~d~G~Y~C~ 275 (978)
++|++|+|.|.+.+.|.+.+.||++++.. .......+ ......|+.. . +.+|.|.++ +.+|+|.|+|.
T Consensus 5 ~~G~~VtL~C~~s~~~~~~i~W~~~~~k~~~g~~~~l~~~~~~~~~~r~~~~~~~~~~g~~~L~I~~l-~~sDsgtY~C~ 83 (94)
T cd07690 5 KKGDTAELPCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRNLWDQGSFPLIIKNL-KIEDSDTYICE 83 (94)
T ss_pred eCCCCEEEEEEeCCCCCcEEEEEECCcEEccCcCCEEEEecccccCCCCceecccCCCCeEEEEECCC-CHHHCEEEEEE
Confidence 46888999999999999999999876321 11111100 0111122211 1 136999998 99999999999
Q ss_pred EEeCcee
Q psy12060 276 ASNKFGS 282 (978)
Q Consensus 276 a~n~~g~ 282 (978)
+.|..+.
T Consensus 84 v~~~~~~ 90 (94)
T cd07690 84 VEDKKEE 90 (94)
T ss_pred ECCccce
Confidence 9998755
No 245
>cd05872 Ig_Sema4B_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4B. Ig_Sema4B_like; Immunoglobulin (Ig)-like domain of Sema4B_like. Sema4B is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4B has extracellular Sema and Ig domains, a transmembrane domain and a short cytoplasmic domain. Sema4B has been shown to preferentially regulate the development of the postsynaptic specialization at the glutamatergic synapses. This cytoplasmic domain includes a PDZ-binding motif upon which the synaptic localization of Sem4B is dependent. Sema4B is a ligand of CLCP1, CLCP1 was identified in an expression profiling analysis, which compared a highly metastic lung cancer subline with its low metastic parental line. Sema4B was shown to promote CLCP1 endocytosis, and their interaction is a potential target for therapeutic intervention of metastasis.
Probab=98.67 E-value=6.9e-08 Score=77.02 Aligned_cols=74 Identities=22% Similarity=0.280 Sum_probs=58.0
Q ss_pred CCCCCCCcEEEEEEEeecCCCeeEEEEcCccCCCCceeeecccEEEeCCCCCCCCeEEEEEEEeCCCceEEEEEEE
Q psy12060 409 EAPKAGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYFENFNRILTIPNVKVEDQGEYICRASNDRSALESSVTIS 484 (978)
Q Consensus 409 ~~v~~G~~~~l~C~~~g~p~~~v~W~~~~~~l~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~ 484 (978)
.++.+|+++.|.|...++ .+.+.|++++..+..+.++......|.|.+++.+|+|.|.|.+. +.|....-+.+.
T Consensus 6 ~tv~~g~~v~L~C~~~s~-~A~v~W~~ng~~l~~~~r~~~~~~GLlI~~~~~~dsG~Y~C~s~-E~gf~~~~~~y~ 79 (85)
T cd05872 6 RTVAPGADVVLPCQLRSN-LASPVWLFNGTPLNAQFSYRVGTDGLLILVTSPEHSGTYRCYSE-EEGFQQLVASYS 79 (85)
T ss_pred EEEecCCCEEEECCCCCC-CccEEEEECCcccCCCcceEEeCCCCEEEECCHhhCEEEEEEEe-cCCCeEEEEEEE
Confidence 456799999999998775 56999999999997766666556668899999999999999987 445544443333
No 246
>PF00047 ig: Immunoglobulin domain The Prosite family only concerns antibodies and MHCs.; InterPro: IPR013151 Members of the immunoglobulin superfamily are found in hundreds of proteins of different functions. Examples include antibodies, the giant muscle kinase titin and receptor tyrosine kinases. Immunoglobulin-like domains may be involved in protein-protein and protein-ligand interactions. The Pfam alignments do not include the first and last strand of the immunoglobulin-like domain.; PDB: 1B6U_A 3O4O_C 3VH8_H 1BIH_A 2C9A_A 2V5Y_A 1BQH_K 2ATP_A 3B9K_A 1NEZ_H ....
Probab=98.66 E-value=4.8e-08 Score=75.22 Aligned_cols=57 Identities=35% Similarity=0.647 Sum_probs=45.7
Q ss_pred CCcEEEEEEE-eecCCCeeEEEEcCccCCCCceeee--ccc----EEEeCCCCCCCCeEEEEEE
Q psy12060 414 GDKVRLECVA-FGYPVPSYNWTRRGSPLPRNAYFEN--FNR----ILTIPNVKVEDQGEYICRA 470 (978)
Q Consensus 414 G~~~~l~C~~-~g~p~~~v~W~~~~~~l~~~~~~~~--~~~----~L~i~~~~~~d~G~Y~C~a 470 (978)
|++++|.|.+ .+.+...+.|+|++..+........ ... .|.|.+++.+|+|.|+|.|
T Consensus 1 G~~v~L~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~v 64 (64)
T PF00047_consen 1 GSSVTLTCSVSSGPPPTTVTWSKNGQSLPEGSTTNRSTNSVSSTSRLTISNVTPEDSGTYTCVV 64 (64)
T ss_dssp TSEEEEEEEEEESSSTSEEEEEETTTTTSEEEEEEEEETTTEEEEEEEESSCTGGGTEEEEEEE
T ss_pred CCeEEEEeecCCCCCCcEEEEEECCccccCcceeEeecccceeeeEEEEccCCHHHCEEEEEEC
Confidence 7899999999 6777789999999988765443221 111 2999999999999999986
No 247
>cd05897 Ig2_IL1R2_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2). Ig2_IL1R2_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds the type II (IL1R2) represented in this group. Mature IL1R2 consists of three IG-like domains, a transmembrane domain, and a short cytoplasmic domain. It lacks the large cytoplasmic domain of Mature IL1R1, and does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.
Probab=98.65 E-value=5.3e-08 Score=79.73 Aligned_cols=70 Identities=17% Similarity=0.263 Sum_probs=50.8
Q ss_pred eeeecccCeEEEeCCCC----CCCCceEEEecccccccccccceEEE-eeCCcEEEeeeeeecceeeEEEEEeecc
Q psy12060 305 EIGNQNWGKAMFCDPPT----NYPGVNYYWARDYFPNFVEEDKRVFV-SYDGALYFSALEQIDAGNYSCNVQSKVS 375 (978)
Q Consensus 305 ~~~~~~~~~~l~C~~~~----~~p~~~i~W~~~~~~~~~~~~~~~~~-~~~~~L~i~~~~~~d~G~Y~C~~~n~~~ 375 (978)
+....+....|.|.-.. ..+.++|+|+||+.++... ..+... ..++.|.|.++..+|+|.|+|++.+..+
T Consensus 5 ~~~~~~~~~~l~Cp~~~~f~~~~~~~~v~WYKd~~~l~~~-~~~~~~~~~~~~L~I~~v~~~D~G~YtC~~~~~~~ 79 (95)
T cd05897 5 QILFTSTSGKLVCPDLSDFTINRTDVELQWYKDSVLLDKD-NEKFYSLKGSTYLHIIDVSLNDSGYYTCKLQFTHE 79 (95)
T ss_pred eEeccccCcEEECCCHHHcccCCCCCcEEEccCCEECcCC-CcceEecCCCCEEEEEEcChhhCEEEEEEEEEeeC
Confidence 44566778899995322 2366799999999875432 223333 3345799999999999999999999864
No 248
>cd07690 Ig1_CD4 First immunoglobulin (Ig) domain of CD4. Ig1_CD4; first immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy.
Probab=98.64 E-value=6.9e-08 Score=79.29 Aligned_cols=67 Identities=25% Similarity=0.425 Sum_probs=50.6
Q ss_pred CCCCCcEEEEEEEeecCCCeeEEEEcCccC-CC-------------Ccee-------eecccEEEeCCCCCCCCeEEEEE
Q psy12060 411 PKAGDKVRLECVAFGYPVPSYNWTRRGSPL-PR-------------NAYF-------ENFNRILTIPNVKVEDQGEYICR 469 (978)
Q Consensus 411 v~~G~~~~l~C~~~g~p~~~v~W~~~~~~l-~~-------------~~~~-------~~~~~~L~i~~~~~~d~G~Y~C~ 469 (978)
+.+|++|+|.|.+.+.+.+.|.|+++++.. .. ..++ ......|+|.+++.+|+|.|.|.
T Consensus 4 ~~~G~~VtL~C~~s~~~~~~i~W~~~~~k~~~g~~~~l~~~~~~~~~~r~~~~~~~~~~g~~~L~I~~l~~sDsgtY~C~ 83 (94)
T cd07690 4 GKKGDTAELPCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRNLWDQGSFPLIIKNLKIEDSDTYICE 83 (94)
T ss_pred eeCCCCEEEEEEeCCCCCcEEEEEECCcEEccCcCCEEEEecccccCCCCceecccCCCCeEEEEECCCCHHHCEEEEEE
Confidence 468999999999999899999999776332 10 0111 12234699999999999999999
Q ss_pred EEeCCCce
Q psy12060 470 ASNDRSAL 477 (978)
Q Consensus 470 a~n~~g~~ 477 (978)
+.|..+..
T Consensus 84 v~~~~~~~ 91 (94)
T cd07690 84 VEDKKEEV 91 (94)
T ss_pred ECCccceE
Confidence 99876554
No 249
>PHA03376 BARF1; Provisional
Probab=98.61 E-value=3.8e-07 Score=81.04 Aligned_cols=118 Identities=18% Similarity=0.351 Sum_probs=77.6
Q ss_pred CCCCCCCcEEEEEEEe---ecCCCeeEEEEcCc---c-C-------------CCCceee----ecccEEEeCCCCCCCCe
Q psy12060 409 EAPKAGDKVRLECVAF---GYPVPSYNWTRRGS---P-L-------------PRNAYFE----NFNRILTIPNVKVEDQG 464 (978)
Q Consensus 409 ~~v~~G~~~~l~C~~~---g~p~~~v~W~~~~~---~-l-------------~~~~~~~----~~~~~L~i~~~~~~d~G 464 (978)
..+..|+.++|.|... ..+...|.|+|.+. . + +.....+ .++-+|.|.+++.+|.|
T Consensus 21 Vta~VGEda~LsC~lnp~ssa~~MrIrWqKs~p~~~~VvL~~~ggdVv~~QmEyRGrtD~~~~~gnvsLvI~~l~lSDdG 100 (221)
T PHA03376 21 VTAFLGERVTLTSYWRRVSLGPEIEVSWFKLGPGEEQVLIGRMHHDVIFIEWPFRGFFDIHRSANTFFLVVTAANISHDG 100 (221)
T ss_pred hhheeCCcEEEEecccCccCCCceEEEEEecCCCCCCEEEEEcCCeeeeeeeccccEEEEEecCCeEEEEEEeeeecCCc
Confidence 4567899999999865 23445899999532 1 1 0111111 23457999999999999
Q ss_pred EEEEEEEeCCCceEEEEEEEEEeeceeeccCCcccccCCCceeEEEEeecCCCCeeEEeECC
Q psy12060 465 EYICRASNDRSALESSVTISIQAEPNFTIPLTDKHMDNQADLTWTCEAFGVPDVTYSWFRNG 526 (978)
Q Consensus 465 ~Y~C~a~n~~g~~~~~~~l~V~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~i~W~~~g 526 (978)
.|+|..........+.-.|++..+-.+.+.........-+..++.|.+.|+|.|.++|..+.
T Consensus 101 tY~C~fQkge~~~~k~ehLt~V~~~~Lsv~a~~~dFp~~~~~~i~C~sggfP~P~~~Wle~~ 162 (221)
T PHA03376 101 NYLCRMKLGETEVTKQEHLSVVKPLTLSVHSERSQFPDFSVLTVTCTVNAFPHPHVQWLMPE 162 (221)
T ss_pred eEEEEEEcCCCceeeeeeeeeeecceEEEEeccccCCCCCeeEEEEecCCcCCchheecccc
Confidence 99999997655444444444444333333222222233566889999888999999998754
No 250
>KOG4802|consensus
Probab=98.61 E-value=4.4e-07 Score=90.32 Aligned_cols=182 Identities=20% Similarity=0.225 Sum_probs=107.8
Q ss_pred CCCCCc-eEEEEeeCCeeEEEeecCCCCCCCc--------eeEEEEEeeccccCceEecccccceeeeecCCceeeEEee
Q psy12060 778 PGLPGG-VQVVEVHKTSATIQWTDGATNGRPI--------THYKIIARTNWNSTWFNVSEHVIGKEVDRYTGRKEASIEN 848 (978)
Q Consensus 778 P~~P~~-~~~~~~~~~~v~l~W~~p~~~~~~i--------~~Y~v~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~ 848 (978)
+-+|.+ .........++.+.|......+-.- .+|-+.-+..+...|+.+.... ....+...+
T Consensus 145 ~l~Pr~k~~y~r~~~g~~av~w~~~~~~~v~~~~~~vr~~w~~g~hase~~~thwQtv~~t~---------~e~~~~~t~ 215 (516)
T KOG4802|consen 145 QLPPRPKILYFRRSRGSHAVDWKIESSLLVYYVHVEVRSHWGRGFHASELGPTHWQTVEKTM---------EENTYIFTD 215 (516)
T ss_pred CCCCcchhhhhhhccCceeeeeeeccccceeeeehhhhhhhcccccccccccccceeeeecC---------CCceeeeee
Confidence 444433 2223455567888888543221000 0111111222335676654322 122456677
Q ss_pred ccCCCceeEEEEEEecCCccCCCCCCCCCCCC-CCCCCCCCCCceeecccccC---cEEEEEEeCCCCCCCCCcceEEEE
Q psy12060 849 VLVPWSTYEFKVIAGNELGYGEPSSPSPQYNT-PADKPYQAPSRIGGGGGKIG---DLSISWEPLPREKQNAPNIYYKIF 924 (978)
Q Consensus 849 ~L~p~~~Y~~~v~A~N~~G~g~~s~~~~~~~t-~~~~P~~~P~~~~~~~~~~~---si~v~W~~p~~~~~~g~i~~Y~i~ 924 (978)
+.|+..|+|||.|+|..|.--+++++..|.. .+..++.+|.++++.....+ ...|.|.|+++ +=+|..|.|.
T Consensus 216 -~rPgRwyefrvaavn~~G~rGFs~PSkpf~ssk~pkaPp~P~dl~l~~v~~dG~~~~~v~w~P~~s---dlPv~~Yki~ 291 (516)
T KOG4802|consen 216 -MRPGRWYEFRVAAVNAYGFRGFSEPSKPFPSSKNPKAPPSPNDLKLIGVQFDGRYMLKVVWCPSKS---DLPVEKYKIT 291 (516)
T ss_pred -cCcceeEEEEEeeeecccccccCCCCCCCCCCCCCCCCcCcccceeeeeeecceEEEEEEeCCCCC---CCcceeeEEE
Confidence 9999999999999999987777777765543 33444567888876554432 47788987544 4469999999
Q ss_pred EEecCC--ccceeeeeeeccceeEEEEEcCCCCceeeEEEEEEEecCCCCCC
Q psy12060 925 WRKKND--TEFQSETLKEYGNVGIAVVRIPSEFYYTEYEVKVQAINDVGPGP 974 (978)
Q Consensus 925 ~~~~~~--~~~~~~~~~~~~~~~~~~~~l~~L~p~t~Y~~~V~A~n~~G~gp 974 (978)
|.-.-. ..-.........++. -+.|.+|.|+..|.+.|+|...-|.+.
T Consensus 292 Ws~~v~s~k~~m~tks~~~k~th--q~si~~L~Pns~Y~VevqAi~y~g~~r 341 (516)
T KOG4802|consen 292 WSLYVNSAKASMITKSSYVKDTH--QFSIKELLPNSSYYVEVQAISYLGSRR 341 (516)
T ss_pred eehhhhhhhhhcccccceeeccc--hhhhhhcCCCCeEEEEEEEEEeccCcc
Confidence 965321 000000001111111 234899999999999999999888764
No 251
>cd05759 Ig2_KIRREL3-like Second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). Ig2_KIRREL3-like: domain similar to the second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.
Probab=98.61 E-value=1.7e-07 Score=76.18 Aligned_cols=78 Identities=24% Similarity=0.364 Sum_probs=48.1
Q ss_pred EEEEEEeec-CCCCeEEEEEcccccccccccccCCCCCCceEeecceEEEeCCCCCCCCeEEEEEEEeCcee-EEeEEEE
Q psy12060 212 ITLSCYAGG-YPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVEDRGSYHCKASNKFGS-IISESVQ 289 (978)
Q Consensus 212 ~~l~C~~~g-~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~d~G~Y~C~a~n~~g~-~~s~~~~ 289 (978)
+.|+|.+.| .|.+.|+|+|+|.++....... ....+.......+.|.|... +.+|.|.|+|+|.|.... ....+++
T Consensus 2 ~~L~C~v~g~~P~~~v~W~~~g~~l~~~~~~~-~~~~~~~~~~~~s~L~i~~~-~~~~~~~y~C~a~n~~l~~~~~~s~~ 79 (82)
T cd05759 2 YNLTCRARGAKPAAEIIWFRDGEVLDGATYSK-ELLKDGKRETTVSTLPITPS-DHDTGRTFTCRARNEALPTGKETSVT 79 (82)
T ss_pred EEEEEEEeCccCCCEEEEEECCEEccCceeee-eEecCCCeEEEEEEEEEeCc-eecCCCEEEEEEcCccCCCCcEEEEE
Confidence 799999986 7989999999998764211100 00011111122345777665 678899999999987632 2234444
Q ss_pred EE
Q psy12060 290 LA 291 (978)
Q Consensus 290 l~ 291 (978)
|.
T Consensus 80 l~ 81 (82)
T cd05759 80 LD 81 (82)
T ss_pred Ec
Confidence 43
No 252
>cd05717 Ig1_Necl-1-3_like First (N-terminal) immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-3 (also known as cell adhesion molecules CADM3, CADM1, and CADM2 respectively). Ig1_Necl-1-3_like: N-terminal immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), and Necl-3 (CADM2). At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1, Necl-2, and Necl-3 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the form
Probab=98.60 E-value=3e-07 Score=77.34 Aligned_cols=80 Identities=20% Similarity=0.364 Sum_probs=56.9
Q ss_pred CCcceeecCCCeEEEEEeeccCCCCeeEEeeCCEEe--------cCCCcEEEe----ecCcEEEccccCCCCEEEEEEEE
Q psy12060 594 LESETYAGEGGNVTIFCNPEAAPKPKFVWKKDGNII--------GSGGRRKIF----ENGNLLISPVSRDDSGIYSCTAT 661 (978)
Q Consensus 594 ~~~~~~~~~g~~~~l~C~~~~~p~~~i~W~~~g~~~--------~~~~~~~~~----~~~~l~i~~~~~~d~G~Y~C~a~ 661 (978)
....+.+.+|++++|.|.+.+.+.+.+.|++.+..+ ....++.+. ...+|.|.+++.+|+|.|+|.+.
T Consensus 3 ~~~~~~v~~G~~v~L~C~~~~~~~~~v~W~~p~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~ 82 (95)
T cd05717 3 VTQDVTVVEGGTATLKCRVKNNDNSSLQWSNPNQQTLYFNDKRALRDNRIQLVNFSANELSISISNVSLSDEGRYTCSLY 82 (95)
T ss_pred cCCcEEEcCCCCEEEEEEECCCCCceEEEeCCCCcEEEeccccccccCcEEEEcCCCCeeEEEEccCCcccCEEEEEEEe
Confidence 345667899999999999998888899998532211 122344442 12359999999999999999998
Q ss_pred eCCceeeeeEEEE
Q psy12060 662 NVHGMDESKGRLI 674 (978)
Q Consensus 662 n~~g~~~~~~~l~ 674 (978)
+... ..+++.|.
T Consensus 83 ~~~~-~~~~~~~~ 94 (95)
T cd05717 83 TMPV-QTAKATVT 94 (95)
T ss_pred cCCC-ceEEEEEE
Confidence 7653 34555554
No 253
>PF00047 ig: Immunoglobulin domain The Prosite family only concerns antibodies and MHCs.; InterPro: IPR013151 Members of the immunoglobulin superfamily are found in hundreds of proteins of different functions. Examples include antibodies, the giant muscle kinase titin and receptor tyrosine kinases. Immunoglobulin-like domains may be involved in protein-protein and protein-ligand interactions. The Pfam alignments do not include the first and last strand of the immunoglobulin-like domain.; PDB: 1B6U_A 3O4O_C 3VH8_H 1BIH_A 2C9A_A 2V5Y_A 1BQH_K 2ATP_A 3B9K_A 1NEZ_H ....
Probab=98.59 E-value=1.1e-07 Score=73.29 Aligned_cols=58 Identities=33% Similarity=0.647 Sum_probs=46.5
Q ss_pred CCeEEEEEee-ccCCCCeeEEeeCCEEecCCCcEEEeecCc-----EEEccccCCCCEEEEEEE
Q psy12060 603 GGNVTIFCNP-EAAPKPKFVWKKDGNIIGSGGRRKIFENGN-----LLISPVSRDDSGIYSCTA 660 (978)
Q Consensus 603 g~~~~l~C~~-~~~p~~~i~W~~~g~~~~~~~~~~~~~~~~-----l~i~~~~~~d~G~Y~C~a 660 (978)
|++++|.|.+ .+.+...+.|++++..+...........+. |.|.+++.+|+|.|+|.|
T Consensus 1 G~~v~L~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~v 64 (64)
T PF00047_consen 1 GSSVTLTCSVSSGPPPTTVTWSKNGQSLPEGSTTNRSTNSVSSTSRLTISNVTPEDSGTYTCVV 64 (64)
T ss_dssp TSEEEEEEEEEESSSTSEEEEEETTTTTSEEEEEEEEETTTEEEEEEEESSCTGGGTEEEEEEE
T ss_pred CCeEEEEeecCCCCCCcEEEEEECCccccCcceeEeecccceeeeEEEEccCCHHHCEEEEEEC
Confidence 7899999999 677778999999987665544433333332 999999999999999986
No 254
>cd05860 Ig4_SCFR Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR). Ig4_SCFR: The fourth Immunoglobulin (Ig)-like domain in stem cell factor receptor (SCFR). SCFR is organized as an extracellular component having five IG-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR. This fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth domain abolishes the ligand-induced dimerization of SCFR and completely inhibits signal transduction.
Probab=98.55 E-value=5.7e-07 Score=73.36 Aligned_cols=81 Identities=17% Similarity=0.258 Sum_probs=64.7
Q ss_pred cceeecCCCeEEEEEeeccCCCCe-eEEeeCCEEecCCCc--EEEe------ecCcEEEccccCCCCEEEEEEEEeCCce
Q psy12060 596 SETYAGEGGNVTIFCNPEAAPKPK-FVWKKDGNIIGSGGR--RKIF------ENGNLLISPVSRDDSGIYSCTATNVHGM 666 (978)
Q Consensus 596 ~~~~~~~g~~~~l~C~~~~~p~~~-i~W~~~g~~~~~~~~--~~~~------~~~~l~i~~~~~~d~G~Y~C~a~n~~g~ 666 (978)
..+.+..|+.+.|.|.++++|+|+ +.|.+++..+..... .... ....|.+..+..+|+|.|+|.|.|..+.
T Consensus 11 ~~~~v~~gE~~~L~V~ieAYP~p~~~~W~~~~~~l~~~~~~~~~~~~~~~~rY~S~L~L~Rlk~~E~G~YTf~a~N~~~~ 90 (101)
T cd05860 11 TTIFVNAGENLDLIVEYEAYPKPEHQQWIYMNRTLTNTSDHYVKSRNESNNRYVSELHLTRLKGTEGGTYTFLVSNSDAS 90 (101)
T ss_pred ceEEEECCCCEEEEEEEEeCCCCeeeEEEcCCcccCccccceeEEeccCceEEEEEEEEeecChhhCcEEEEEEECCCCe
Confidence 445689999999999999999997 999998876543332 1111 1134999999999999999999999999
Q ss_pred eeeeEEEEEE
Q psy12060 667 DESKGRLIVL 676 (978)
Q Consensus 667 ~~~~~~l~v~ 676 (978)
...++.|.|.
T Consensus 91 ~s~tF~l~v~ 100 (101)
T cd05860 91 ASVTFNVYVN 100 (101)
T ss_pred EEEEEEEEEe
Confidence 8888887764
No 255
>smart00409 IG Immunoglobulin.
Probab=98.55 E-value=1.1e-06 Score=72.70 Aligned_cols=78 Identities=36% Similarity=0.650 Sum_probs=63.8
Q ss_pred eeecCCCeEEEEEeeccCCCCeeEEeeC-CEEecCCCcEEEeec---CcEEEccccCCCCEEEEEEEEeCCceeeeeEEE
Q psy12060 598 TYAGEGGNVTIFCNPEAAPKPKFVWKKD-GNIIGSGGRRKIFEN---GNLLISPVSRDDSGIYSCTATNVHGMDESKGRL 673 (978)
Q Consensus 598 ~~~~~g~~~~l~C~~~~~p~~~i~W~~~-g~~~~~~~~~~~~~~---~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l 673 (978)
..+..|+++.|.|.+.+.+.+.+.|+++ +..+....+...... ..|.|.++..+|+|.|+|.+.+..+.......|
T Consensus 4 ~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~v~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~v~~~~~~~~~~~~l 83 (86)
T smart00409 4 VTVKEGESVTLSCEVSGSPPPEVTWYKQGGKLLAESGRFSVSRSGSNSTLTISNVTPEDSGTYTCAATNSSGSASSTTTL 83 (86)
T ss_pred EEEeCCCeEEEEEEEccCCCCeEEEEECCCEEcCCCCcEEEEEcCCeeEEEEEeeccccCeEEEEEEEcCCCeEEEEEEE
Confidence 4467899999999999888889999998 887765555555544 469999999999999999999888877666655
Q ss_pred EE
Q psy12060 674 IV 675 (978)
Q Consensus 674 ~v 675 (978)
.|
T Consensus 84 ~V 85 (86)
T smart00409 84 TV 85 (86)
T ss_pred EE
Confidence 54
No 256
>smart00410 IG_like Immunoglobulin like. IG domains that cannot be classified into one of IGv1, IGc1, IGc2, IG.
Probab=98.55 E-value=1.1e-06 Score=72.70 Aligned_cols=78 Identities=36% Similarity=0.650 Sum_probs=63.8
Q ss_pred eeecCCCeEEEEEeeccCCCCeeEEeeC-CEEecCCCcEEEeec---CcEEEccccCCCCEEEEEEEEeCCceeeeeEEE
Q psy12060 598 TYAGEGGNVTIFCNPEAAPKPKFVWKKD-GNIIGSGGRRKIFEN---GNLLISPVSRDDSGIYSCTATNVHGMDESKGRL 673 (978)
Q Consensus 598 ~~~~~g~~~~l~C~~~~~p~~~i~W~~~-g~~~~~~~~~~~~~~---~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l 673 (978)
..+..|+++.|.|.+.+.+.+.+.|+++ +..+....+...... ..|.|.++..+|+|.|+|.+.+..+.......|
T Consensus 4 ~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~v~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~v~~~~~~~~~~~~l 83 (86)
T smart00410 4 VTVKEGESVTLSCEVSGSPPPEVTWYKQGGKLLAESGRFSVSRSGSNSTLTISNVTPEDSGTYTCAATNSSGSASSTTTL 83 (86)
T ss_pred EEEeCCCeEEEEEEEccCCCCeEEEEECCCEEcCCCCcEEEEEcCCeeEEEEEeeccccCeEEEEEEEcCCCeEEEEEEE
Confidence 4467899999999999888889999998 887765555555544 469999999999999999999888877666655
Q ss_pred EE
Q psy12060 674 IV 675 (978)
Q Consensus 674 ~v 675 (978)
.|
T Consensus 84 ~V 85 (86)
T smart00410 84 TV 85 (86)
T ss_pred EE
Confidence 54
No 257
>cd05896 Ig1_IL1RAPL-1_like First immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1). Ig1_ IL1RAPL-1_like: domain similar to the first immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1). IL-1 alpha and IL-1 beta are cytokines which participates in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of
Probab=98.53 E-value=5.9e-07 Score=73.45 Aligned_cols=83 Identities=14% Similarity=0.211 Sum_probs=59.7
Q ss_pred ccccCCCceeEEEEee-----------cCCCCeeEEeECCEECCCCCCCCCCCCcEEEecCEEEEEeCCCCCCCeEEEEE
Q psy12060 498 KHMDNQADLTWTCEAF-----------GVPDVTYSWFRNGELLNSETLPLEDQDRYFIQDNVLTIRYLNPERDPAMYQCR 566 (978)
Q Consensus 498 ~~~~~g~~~~l~C~~~-----------~~p~~~i~W~~~g~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~d~G~Y~C~ 566 (978)
..+.+|+.+.|.|... ......+.|+|++..+...........|+...+..|.|..+.. +|+|.|+|+
T Consensus 10 ~~~~~GE~v~l~C~~~~~~~~~~~~~~~~~~~~v~WyK~~~~~~~~~~~~~~~~Ri~~~~~~Lwf~Pa~~-eDSG~Y~C~ 88 (104)
T cd05896 10 YMVLAGEPVRIKCALFYGYIRTNYSMAQSAGLSLMWYKSSGDGEEPIEIIFDGVRMSKEEDSIWFRPAEL-QDSGLYTCV 88 (104)
T ss_pred EEEcCCCeEEEECCCccccccccccccccCCceEEEEECCCCCCCCCcccccceeEEEeCCEEEEEeCCh-hhCeEEEEE
Confidence 4578999999999861 1124589999997655432111111247778889999999997 999999999
Q ss_pred EEcCCCceeeEEEEE
Q psy12060 567 AKNQLKTRYSSAQLR 581 (978)
Q Consensus 567 a~n~~g~~~~~~~l~ 581 (978)
+.|.......+..|.
T Consensus 89 ~rN~t~C~~~~i~l~ 103 (104)
T cd05896 89 LRNSTYCMKVSMSLT 103 (104)
T ss_pred ECCCCcceEEEEEEE
Confidence 999876655555443
No 258
>smart00409 IG Immunoglobulin.
Probab=98.50 E-value=8.2e-07 Score=73.41 Aligned_cols=76 Identities=36% Similarity=0.649 Sum_probs=60.2
Q ss_pred CCCCCCcEEEEEEEeecCCCeeEEEEc-CccCCCCcee--eec--ccEEEeCCCCCCCCeEEEEEEEeCCCceEEEEEEE
Q psy12060 410 APKAGDKVRLECVAFGYPVPSYNWTRR-GSPLPRNAYF--ENF--NRILTIPNVKVEDQGEYICRASNDRSALESSVTIS 484 (978)
Q Consensus 410 ~v~~G~~~~l~C~~~g~p~~~v~W~~~-~~~l~~~~~~--~~~--~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~ 484 (978)
.+..|++++|.|.+.+.+.+.+.|+++ +..+...... ... ...|.|.+++..|+|.|.|.+.+..+.....+.|.
T Consensus 5 ~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~v~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~v~~~~~~~~~~~~l~ 84 (86)
T smart00409 5 TVKEGESVTLSCEVSGSPPPEVTWYKQGGKLLAESGRFSVSRSGSNSTLTISNVTPEDSGTYTCAATNSSGSASSTTTLT 84 (86)
T ss_pred EEeCCCeEEEEEEEccCCCCeEEEEECCCEEcCCCCcEEEEEcCCeeEEEEEeeccccCeEEEEEEEcCCCeEEEEEEEE
Confidence 346899999999999888889999998 7777533222 111 26899999999999999999998887776667666
Q ss_pred E
Q psy12060 485 I 485 (978)
Q Consensus 485 V 485 (978)
|
T Consensus 85 V 85 (86)
T smart00409 85 V 85 (86)
T ss_pred E
Confidence 5
No 259
>smart00410 IG_like Immunoglobulin like. IG domains that cannot be classified into one of IGv1, IGc1, IGc2, IG.
Probab=98.50 E-value=8.2e-07 Score=73.41 Aligned_cols=76 Identities=36% Similarity=0.649 Sum_probs=60.2
Q ss_pred CCCCCCcEEEEEEEeecCCCeeEEEEc-CccCCCCcee--eec--ccEEEeCCCCCCCCeEEEEEEEeCCCceEEEEEEE
Q psy12060 410 APKAGDKVRLECVAFGYPVPSYNWTRR-GSPLPRNAYF--ENF--NRILTIPNVKVEDQGEYICRASNDRSALESSVTIS 484 (978)
Q Consensus 410 ~v~~G~~~~l~C~~~g~p~~~v~W~~~-~~~l~~~~~~--~~~--~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~ 484 (978)
.+..|++++|.|.+.+.+.+.+.|+++ +..+...... ... ...|.|.+++..|+|.|.|.+.+..+.....+.|.
T Consensus 5 ~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~v~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~v~~~~~~~~~~~~l~ 84 (86)
T smart00410 5 TVKEGESVTLSCEVSGSPPPEVTWYKQGGKLLAESGRFSVSRSGSNSTLTISNVTPEDSGTYTCAATNSSGSASSTTTLT 84 (86)
T ss_pred EEeCCCeEEEEEEEccCCCCeEEEEECCCEEcCCCCcEEEEEcCCeeEEEEEeeccccCeEEEEEEEcCCCeEEEEEEEE
Confidence 346899999999999888889999998 7777533222 111 26899999999999999999998887776667666
Q ss_pred E
Q psy12060 485 I 485 (978)
Q Consensus 485 V 485 (978)
|
T Consensus 85 V 85 (86)
T smart00410 85 V 85 (86)
T ss_pred E
Confidence 5
No 260
>PHA03376 BARF1; Provisional
Probab=98.48 E-value=2.6e-06 Score=75.87 Aligned_cols=118 Identities=19% Similarity=0.200 Sum_probs=69.2
Q ss_pred cccCcEEEEEEee---cCCCCeEEEEEccc----c-cccccccccCC--CCCCceEe---e-cceEEEeCCCCCCCCeEE
Q psy12060 207 SILNDITLSCYAG---GYPNPSYEWFKEDY----V-QDRLVANLIDP--LSDKRFTL---S-GGNLIINDPRQVEDRGSY 272 (978)
Q Consensus 207 ~~g~~~~l~C~~~---g~p~~~v~W~~~~~----~-~~~~~~~~~~~--~~~~~~~~---~-~~~l~i~~~~~~~d~G~Y 272 (978)
.+|++++|+|.-. ..+.-.|.|+|.+. . +.......+.+ ....+..+ . +-+|.|.++ +.+|.|+|
T Consensus 24 ~VGEda~LsC~lnp~ssa~~MrIrWqKs~p~~~~VvL~~~ggdVv~~QmEyRGrtD~~~~~gnvsLvI~~l-~lSDdGtY 102 (221)
T PHA03376 24 FLGERVTLTSYWRRVSLGPEIEVSWFKLGPGEEQVLIGRMHHDVIFIEWPFRGFFDIHRSANTFFLVVTAA-NISHDGNY 102 (221)
T ss_pred eeCCcEEEEecccCccCCCceEEEEEecCCCCCCEEEEEcCCeeeeeeeccccEEEEEecCCeEEEEEEee-eecCCceE
Confidence 4688899999865 22445899999642 1 11111111111 22334443 1 227889897 99999999
Q ss_pred EEEEEeCc-eeEEeE---EE---EEEEeeec-ccccCCCCeeeecccCeEEEeCCCCCCCCceEEEecccc
Q psy12060 273 HCKASNKF-GSIISE---SV---QLAFGFIG-EFNLKRAPEIGNQNWGKAMFCDPPTNYPGVNYYWARDYF 335 (978)
Q Consensus 273 ~C~a~n~~-g~~~s~---~~---~l~v~~~~-~~~~~~~~~~~~~~~~~~l~C~~~~~~p~~~i~W~~~~~ 335 (978)
+|...... |....+ .+ +|.|.... .|+. ....++.|. .+|+|.|.++|.-+..
T Consensus 103 ~C~fQkge~~~~k~ehLt~V~~~~Lsv~a~~~dFp~---------~~~~~i~C~-sggfP~P~~~Wle~~~ 163 (221)
T PHA03376 103 LCRMKLGETEVTKQEHLSVVKPLTLSVHSERSQFPD---------FSVLTVTCT-VNAFPHPHVQWLMPEG 163 (221)
T ss_pred EEEEEcCCCceeeeeeeeeeecceEEEEeccccCCC---------CCeeEEEEe-cCCcCCchheeccccC
Confidence 99998544 222111 11 13332211 1221 334679999 5999999999998753
No 261
>cd00063 FN3 Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all animal proteins contain the FN3 repeat; including extracellular and intracellular proteins, membrane spanning cytokine receptors, growth hormone receptors, tyrosine phosphatase receptors, and adhesion molecules. FN3-like domains are also found in bacterial glycosyl hydrolases.
Probab=98.48 E-value=8.5e-07 Score=74.59 Aligned_cols=86 Identities=22% Similarity=0.353 Sum_probs=65.8
Q ss_pred CCCCceeecccccCcEEEEEEeCCCCCCCCCcceEEEEEEecCCccceeeeeeeccceeEEEEEcCCCCceeeEEEEEEE
Q psy12060 887 QAPSRIGGGGGKIGDLSISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETLKEYGNVGIAVVRIPSEFYYTEYEVKVQA 966 (978)
Q Consensus 887 ~~P~~~~~~~~~~~si~v~W~~p~~~~~~g~i~~Y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~p~t~Y~~~V~A 966 (978)
.+|.++.+......++.|+|++++ ..++.+.+|.|+|+..+...|....... .....+.+.+|.|++.|.|+|+|
T Consensus 2 ~~p~~~~~~~~~~~~~~v~W~~~~--~~~~~~~~y~v~~~~~~~~~~~~~~~~~---~~~~~~~i~~l~p~~~Y~~~v~a 76 (93)
T cd00063 2 SPPTNLRVTDVTSTSVTLSWTPPE--DDGGPITGYVVEYREKGSGDWKEVEVTP---GSETSYTLTGLKPGTEYEFRVRA 76 (93)
T ss_pred cCCCCcEEEEecCCEEEEEECCCC--CCCCcceeEEEEEeeCCCCCCEEeeccC---CcccEEEEccccCCCEEEEEEEE
Confidence 356778887777899999999953 3336788999999887655565443321 12245778999999999999999
Q ss_pred ecCCCCCCCCC
Q psy12060 967 INDVGPGPESE 977 (978)
Q Consensus 967 ~n~~G~gp~S~ 977 (978)
.+..|.|++|.
T Consensus 77 ~~~~~~~~~s~ 87 (93)
T cd00063 77 VNGGGESPPSE 87 (93)
T ss_pred ECCCccCCCcc
Confidence 99999998875
No 262
>cd05881 Ig1_Necl-2 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Ig1_Necl-2: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-2, Necl-2 (also known as cell adhesion molecule 1 (CADM1), SynCAM1, IGSF4A, Tslc1, sgIGSF, and RA175). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-2 is expressed in a wide variety of tissues, and is a
Probab=98.46 E-value=1.4e-06 Score=71.52 Aligned_cols=66 Identities=15% Similarity=0.293 Sum_probs=48.8
Q ss_pred CCCCCCCCcEEEEEEEeecCCCeeEEEEcCccC--------CCCceee-----ecccEEEeCCCCCCCCeEEEEEEEeC
Q psy12060 408 PEAPKAGDKVRLECVAFGYPVPSYNWTRRGSPL--------PRNAYFE-----NFNRILTIPNVKVEDQGEYICRASND 473 (978)
Q Consensus 408 ~~~v~~G~~~~l~C~~~g~p~~~v~W~~~~~~l--------~~~~~~~-----~~~~~L~i~~~~~~d~G~Y~C~a~n~ 473 (978)
+.++.+|++++|.|.+.+.....+.|++.+..+ ....++. ....+|.|.+++.+|+|.|.|.+...
T Consensus 6 nvtv~~G~ta~L~C~v~~~~~~~v~w~~~~~~~i~~~~~~~~~d~Rf~~~~~~~~~~tL~I~~vq~~D~G~Y~Cqv~t~ 84 (95)
T cd05881 6 DVTVVEGEVAIISCRVKNNDDSVIQLLNPNRQTIYFRDVRPLKDSRFQLVNFSSNELRVSLSNVSLSDEGRYFCQLYTD 84 (95)
T ss_pred ceEEcCCCcEEEEEEEccCCccEEEEEecCCcEEEecCccccCCcCEEEEeCCCCEEEEEECcCCcccCEEEEEEEEcc
Confidence 346679999999999998766678888766432 1222222 22347999999999999999999763
No 263
>cd05883 Ig2_Necl-2 Second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Ig2_Necl-2: second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Nectin-like molecules (Necls) have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is expressed in a wide variety of tissues, and is a putative tumour suppressor gene, which is downregulated in aggressive neuroblastoma. Ig domains are likely to participate in ligand binding and recognition.
Probab=98.45 E-value=1.8e-06 Score=68.05 Aligned_cols=79 Identities=16% Similarity=0.249 Sum_probs=52.6
Q ss_pred EEEEEEee-cCCCCeEEEEEcccccccccccccCCCCCCceEeecceEEEeCCCCCCCCeEEEEEEEeCceeEEeEEEEE
Q psy12060 212 ITLSCYAG-GYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVEDRGSYHCKASNKFGSIISESVQL 290 (978)
Q Consensus 212 ~~l~C~~~-g~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~d~G~Y~C~a~n~~g~~~s~~~~l 290 (978)
+.|.|.+. ++|+++|+|||++.++...... .+.....+ ....+|.|..- +.+|...|+|+|.|..-........|
T Consensus 2 ~~L~C~s~gSkP~A~I~W~k~~~~l~~~~~~--~~~~~~~~-t~~S~L~~~p~-~eDdG~~~~C~a~~~~l~~~~~~~~L 77 (82)
T cd05883 2 IELNCTAMASKPAATIRWFKGNKELTGKSTV--EETWSRMF-TVTSQLMLKVT-KEDDGVPVICLVDHPAVKDLQTQRYL 77 (82)
T ss_pred EEEEEEecCCCCCCEEEEEECCEECcCcccc--eeccCCCc-EEEEEEEEECc-hhhCCCEEEEEEcCcccCCceeeEEE
Confidence 78999985 6999999999999887432110 11111112 22346777654 67888899999999764445566777
Q ss_pred EEee
Q psy12060 291 AFGF 294 (978)
Q Consensus 291 ~v~~ 294 (978)
.|.|
T Consensus 78 ~V~y 81 (82)
T cd05883 78 EVQY 81 (82)
T ss_pred EEEE
Confidence 7655
No 264
>cd05759 Ig2_KIRREL3-like Second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). Ig2_KIRREL3-like: domain similar to the second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.
Probab=98.45 E-value=7.7e-07 Score=72.35 Aligned_cols=70 Identities=29% Similarity=0.466 Sum_probs=51.0
Q ss_pred cEEEEEEEee-cCCCeeEEEEcCccCCCCceee----e-----cccEEEeCCCCCCCCeEEEEEEEeCCC--ceEEEEEE
Q psy12060 416 KVRLECVAFG-YPVPSYNWTRRGSPLPRNAYFE----N-----FNRILTIPNVKVEDQGEYICRASNDRS--ALESSVTI 483 (978)
Q Consensus 416 ~~~l~C~~~g-~p~~~v~W~~~~~~l~~~~~~~----~-----~~~~L~i~~~~~~d~G~Y~C~a~n~~g--~~~~~~~l 483 (978)
.+.|.|.+.| .|.+.|+|+|+|.++....... . ..+.|.|.....+|.|.|+|.|.|... ....+++|
T Consensus 1 ~~~L~C~v~g~~P~~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~~~~~y~C~a~n~~l~~~~~~s~~l 80 (82)
T cd05759 1 PYNLTCRARGAKPAAEIIWFRDGEVLDGATYSKELLKDGKRETTVSTLPITPSDHDTGRTFTCRARNEALPTGKETSVTL 80 (82)
T ss_pred CEEEEEEEeCccCCCEEEEEECCEEccCceeeeeEecCCCeEEEEEEEEEeCceecCCCEEEEEEcCccCCCCcEEEEEE
Confidence 3689999987 6888999999999886432211 1 124688888888899999999999753 34556665
Q ss_pred EE
Q psy12060 484 SI 485 (978)
Q Consensus 484 ~V 485 (978)
.|
T Consensus 81 ~v 82 (82)
T cd05759 81 DV 82 (82)
T ss_pred cC
Confidence 43
No 265
>cd05872 Ig_Sema4B_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4B. Ig_Sema4B_like; Immunoglobulin (Ig)-like domain of Sema4B_like. Sema4B is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4B has extracellular Sema and Ig domains, a transmembrane domain and a short cytoplasmic domain. Sema4B has been shown to preferentially regulate the development of the postsynaptic specialization at the glutamatergic synapses. This cytoplasmic domain includes a PDZ-binding motif upon which the synaptic localization of Sem4B is dependent. Sema4B is a ligand of CLCP1, CLCP1 was identified in an expression profiling analysis, which compared a highly metastic lung cancer subline with its low metastic parental line. Sema4B was shown to promote CLCP1 endocytosis, and their interaction is a potential target for therapeutic intervention of metastasis.
Probab=98.44 E-value=1.5e-06 Score=69.46 Aligned_cols=74 Identities=22% Similarity=0.335 Sum_probs=57.1
Q ss_pred cccccCCCceeEEEEeecCCCCeeEEeECCEECCCCCCCCCCCCcEEEecCEEEEEeCCCCCCCeEEEEEEEcCCCceee
Q psy12060 497 DKHMDNQADLTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQDNVLTIRYLNPERDPAMYQCRAKNQLKTRYS 576 (978)
Q Consensus 497 ~~~~~~g~~~~l~C~~~~~p~~~i~W~~~g~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~d~G~Y~C~a~n~~g~~~~ 576 (978)
...+..|+++.|.|...+ +.+.+.|+++|..+. ...++......|.|..+.. .|+|.|.|.+. ..|-...
T Consensus 5 ~~tv~~g~~v~L~C~~~s-~~A~v~W~~ng~~l~-------~~~r~~~~~~GLlI~~~~~-~dsG~Y~C~s~-E~gf~~~ 74 (85)
T cd05872 5 NRTVAPGADVVLPCQLRS-NLASPVWLFNGTPLN-------AQFSYRVGTDGLLILVTSP-EHSGTYRCYSE-EEGFQQL 74 (85)
T ss_pred EEEEecCCCEEEECCCCC-CCccEEEEECCcccC-------CCcceEEeCCCCEEEECCH-hhCEEEEEEEe-cCCCeEE
Confidence 456889999999999876 577999999999886 3356666667788999986 99999999987 3344333
Q ss_pred EEEE
Q psy12060 577 SAQL 580 (978)
Q Consensus 577 ~~~l 580 (978)
.+.+
T Consensus 75 ~~~y 78 (85)
T cd05872 75 VASY 78 (85)
T ss_pred EEEE
Confidence 3333
No 266
>KOG0613|consensus
Probab=98.43 E-value=9.8e-06 Score=94.08 Aligned_cols=353 Identities=14% Similarity=0.090 Sum_probs=192.9
Q ss_pred ceeecCCCeEEEEEeeccCCCC-eeEEeeCCEEecCCCcEEE-----eecCcEEEccccCCCCEEEEEEEEeCCceeeee
Q psy12060 597 ETYAGEGGNVTIFCNPEAAPKP-KFVWKKDGNIIGSGGRRKI-----FENGNLLISPVSRDDSGIYSCTATNVHGMDESK 670 (978)
Q Consensus 597 ~~~~~~g~~~~l~C~~~~~p~~-~i~W~~~g~~~~~~~~~~~-----~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~ 670 (978)
.+.+..+..+++.|...+.+.| .++|++++.....+..-.. .....+.|..+...+.+.|.|.|.|..|.....
T Consensus 343 ~v~a~d~~~v~m~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ts~~~~~~~~~~~e~~~~~~~a~n~~g~~~~~ 422 (1205)
T KOG0613|consen 343 SVTARDNTLVEMPTALSGTQKPDEAQGYHGEEVSSESLGALPCPVGTVTSHTYTIKDAGPGEGYFTRVPAVNKGGTEQTI 422 (1205)
T ss_pred eeccccCcceeecccccCCcCCchheeecccccccccccccccccccccCcchhhhhcCcccccccccceeccCCccccc
Confidence 4446678889999999998888 4999998766544321111 112248888999999999999999999988776
Q ss_pred EEEEEEeCCcee----eeCCCceEEEcc--ccEEEEEEeeecCCcCeEEEEeeCCEEccccccccccCCeeecCCceEEE
Q psy12060 671 GRLIVLHGPSYY----EQLPPKITIAAH--RNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEI 744 (978)
Q Consensus 671 ~~l~v~~~p~~~----~~~~~~~~~~~g--~~~~l~C~~~~~p~~~~~~~W~~~g~~~~~~~~~~~~~~~~~~~~~~l~i 744 (978)
....+...+... ...........+ +.+.+.|.+.+.+.+....+|.+.+.+...... ......-.+|.+
T Consensus 423 ~~~~vs~~~~gt~~~~~kk~~~~t~~L~~~~~i~~~~~~~s~~~~~~~~tt~~~~~~~s~~s~-----~l~r~~~tslLl 497 (1205)
T KOG0613|consen 423 AESTVSEEMPGTQPPKFKKDVSTTDLLTVKDEITVRTPDSSTSMPMTTVTTIKDGLPLSDRSV-----TLTRDVLTSLLL 497 (1205)
T ss_pred chhhcccccCCCCCccccccccccccccCCcccccccCCCCccccceeEeeccCCcccccccc-----cccccchhhhee
Confidence 655554422211 011112222333 788999999998877555677777665433110 111111235666
Q ss_pred eccCCCCCEEEEEEEEcCCCceeee--EEEEEcCCCCCCCceEEEEeeCCeeEEEeecCC-CCCCCceeEEEEEeecccc
Q psy12060 745 TNASFADAGEYECVVKSTVGKISTK--TTVIVEGPPGLPGGVQVVEVHKTSATIQWTDGA-TNGRPITHYKIIARTNWNS 821 (978)
Q Consensus 745 ~~~~~~d~g~Y~c~a~n~~G~~s~~--~~l~v~~~P~~P~~~~~~~~~~~~v~l~W~~p~-~~~~~i~~Y~v~~~~~~~~ 821 (978)
.-....+.+.|.-...-..|....+ ..+.-. -+.+|..+....--.....|.|.+-. +.+.--.+|.+..+. .+
T Consensus 498 k~~~~~~~A~~~~a~~~~~~k~~~~~~~~l~~~-~s~a~~~~~~~~~~~g~p~l~~~~~~~E~~~vs~~~~~a~~q--lg 574 (1205)
T KOG0613|consen 498 KVASLSDGAQYTRALRTLQGKPVPSLDRKLPAA-KSSAPKPIHTQENQPGTPTLEWEPKPAEASKVSLHYASATRQ--LG 574 (1205)
T ss_pred eccCCCccchhhhhhhccCCCCCCccccccccc-ccCCcccccccccCCCCcccccCCCcccccccchhhhhhhhh--cc
Confidence 6677788888866554443332211 111111 11122112111223344555555422 222111122222221 11
Q ss_pred CceEecccccceeeeecCCceeeEEeeccCCCceeEEEEEEecCCccCCCCCCCCCCCCCC-C--CCCCCCCceeecccc
Q psy12060 822 TWFNVSEHVIGKEVDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPSPQYNTPA-D--KPYQAPSRIGGGGGK 898 (978)
Q Consensus 822 ~w~~~~~~~~~~~~~~~~~~~~~~~~~~L~p~~~Y~~~v~A~N~~G~g~~s~~~~~~~t~~-~--~P~~~P~~~~~~~~~ 898 (978)
.|.... . ..+ +..++.+ +.|.+.|++++.+.|..|.+.++... ..... + .+...|+.-......
T Consensus 575 ~~~~~~--------~-r~g-tt~t~~~-~~p~~~~~~t~~~k~~~gE~~ps~~~--~t~k~~D~~q~~~~~~~~~~~ks~ 641 (1205)
T KOG0613|consen 575 VWRVPE--------S-RPG-TTETIGS-ILPGHEYHVTIKAKNELGESRPSSKS--TTLKWQDPSQLKRRPVSEPSYKSP 641 (1205)
T ss_pred CCcccc--------c-CCC-ccccccc-ccccccceeehhhhhcccccCCCCCC--ccccccccccccccccCCcccccc
Confidence 221111 1 123 5556777 99999999999999999999998532 11211 1 112222222233344
Q ss_pred cCcEEEEEEeCCCCCCCCCcceEEEEEEecC-CccceeeeeeeccceeEEEEEcCCCCceeeEEEEEEEecCCCCCCC
Q psy12060 899 IGDLSISWEPLPREKQNAPNIYYKIFWRKKN-DTEFQSETLKEYGNVGIAVVRIPSEFYYTEYEVKVQAINDVGPGPE 975 (978)
Q Consensus 899 ~~si~v~W~~p~~~~~~g~i~~Y~i~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~L~p~t~Y~~~V~A~n~~G~gp~ 975 (978)
..+..++|.. ..+..--++..|....-... +..|....-.. ......+....+.+.|...+.+.+.++..+.
T Consensus 642 ~~~~k~s~l~-~l~k~~~~a~~~~~~~~~vd~~~K~kv~~~~~----e~d~~i~~~~~t~si~~p~k~~e~~~~~~~~ 714 (1205)
T KOG0613|consen 642 DSSQKPSKLV-GLSKMDLPANLESQVKPTVVSSPKKKVKKKKQ----EKDLEILAKKGTTSIVEPEKPPESEAATPAE 714 (1205)
T ss_pred ccccchhccc-chhhccccccceeeeeccccCCcccccccccc----ccchhhhccCCCCcccccccCCccccCCccc
Confidence 5678889987 34444445555655443333 33333221111 1112335667788889998988888887554
No 267
>cd05741 Ig_CEACAM_D1_like First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) and similar proteins. Ig_CEACAM_D1_like : immunoglobulin (IG)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily-like. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surf
Probab=98.42 E-value=1.4e-06 Score=73.02 Aligned_cols=82 Identities=20% Similarity=0.243 Sum_probs=56.4
Q ss_pred cCcEEEEEEeecCCCCeEEEEEccccccccc--------ccccCCCCCCceEe-ecceEEEeCCCCCCCCeEEEEEEEeC
Q psy12060 209 LNDITLSCYAGGYPNPSYEWFKEDYVQDRLV--------ANLIDPLSDKRFTL-SGGNLIINDPRQVEDRGSYHCKASNK 279 (978)
Q Consensus 209 g~~~~l~C~~~g~p~~~v~W~~~~~~~~~~~--------~~~~~~~~~~~~~~-~~~~l~i~~~~~~~d~G~Y~C~a~n~ 279 (978)
|++|+|.|.....+...|.|+|+........ .....+....|..+ .+++|.|.++ +.+|+|.|+|.+...
T Consensus 1 G~~VtL~c~~~~~~~~~i~W~~~~~~~~~~~i~~~~~~~~~~~~~~~~~R~~~~~~~sL~I~~l-~~~DsG~Y~c~v~~~ 79 (92)
T cd05741 1 GESVTLPVSNLPENLQEITWYKGKDKSVEAEIASYIATNSTVFGPAYSGRETIYPNGSLLIQNL-TKEDSGTYTLQIIST 79 (92)
T ss_pred CCcEEEEcccCCCCCEEEEEECCCCCCcceEEEEEecCCceeECCCcCCeEEEcCCceEEEccC-CchhcEEEEEEEEcC
Confidence 6789999998766667999999875432110 01111222345444 4689999998 999999999999988
Q ss_pred ceeEEeEEEEEE
Q psy12060 280 FGSIISESVQLA 291 (978)
Q Consensus 280 ~g~~~s~~~~l~ 291 (978)
.|......+.|.
T Consensus 80 ~~~~~~~~~~l~ 91 (92)
T cd05741 80 NGVTENAKFFLR 91 (92)
T ss_pred CCcEEEEEEEEE
Confidence 776555555554
No 268
>cd05751 Ig1_LILRB1_like First immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1) and similar proteins. Ig1_LILRB1_like: domain similar to the first immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1). This group includes, LILRA5 (LIR9), an activating natural cytotoxicity receptor NKp46, and the immune-type receptor glycoprotein VI (GPVI). LILRs are a family of immunoreceptors expressed on expressed on T and B cells, on monocytes, dendritic cells, and subgroups of natural killer (NK) cells. The human LILR family contains nine proteins (LILRA1-3,and 5, and LILRB1-5). From functional assays, and as the cytoplasmic domains of various LILRs, for example LILRB1 (LIR-1), LILRB2 (LIR-2), and LILRB3 (LIR-3) contain immunoreceptor tyrosine-based inhibitory motifs (ITIMs) it is thought that LIR proteins are inhibitory receptors. Of the eight LIR family proteins, only LIR-1(LILRB1), and LIR-2 (LILRB2),
Probab=98.42 E-value=5.1e-07 Score=74.83 Aligned_cols=81 Identities=19% Similarity=0.239 Sum_probs=55.6
Q ss_pred CeeeecccCeEEEeCCCCCCCCceEEEecccccccccccceEEEeeCCcEEEeeeeeecceeeEEEEEeecccccccCCc
Q psy12060 304 PEIGNQNWGKAMFCDPPTNYPGVNYYWARDYFPNFVEEDKRVFVSYDGALYFSALEQIDAGNYSCNVQSKVSDTGRNGPF 383 (978)
Q Consensus 304 ~~~~~~~~~~~l~C~~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~n~~~~~~~~~~~ 383 (978)
...+..|+.++|+|... .+...+.|+|+|....... .......+.|.|.+++.+|+|.|+|++.+........+..
T Consensus 10 ~~vV~~G~~VtL~C~~~--~~~~~f~l~k~g~~~~~~~--~~~~~~~~~f~i~~v~~~~~G~Y~C~~~~~~~~~S~~Sd~ 85 (91)
T cd05751 10 SSVVPLGKPVTLRCQGP--YGAVEYRLYREGSTFAVKK--PPEPQNKAKFFIPSMKREHAGRYRCYYRSGVALWSEPSDP 85 (91)
T ss_pred CCccCCCCcEEEEEecC--CCCCEEEEEECCCCccccc--cCCCceeEEEEccCCChhHCEEEEEEEECCCCccCCCCCc
Confidence 34667899999999874 5677899999987533211 0011223469999999999999999998863222334444
Q ss_pred eeEEE
Q psy12060 384 FPLKV 388 (978)
Q Consensus 384 ~~l~V 388 (978)
+.|.|
T Consensus 86 lel~V 90 (91)
T cd05751 86 LELVV 90 (91)
T ss_pred EEEEe
Confidence 66655
No 269
>cd05774 Ig_CEACAM_D1 First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM). IG_CEACAM_D1: immunoglobulin (Ig)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the D
Probab=98.36 E-value=3.5e-06 Score=70.97 Aligned_cols=84 Identities=19% Similarity=0.235 Sum_probs=54.0
Q ss_pred cccCcEEEEEEeecCCCCeEEEEEcccccc-----cc----cccccCCCCCCceEe-ecceEEEeCCCCCCCCeEEEEEE
Q psy12060 207 SILNDITLSCYAGGYPNPSYEWFKEDYVQD-----RL----VANLIDPLSDKRFTL-SGGNLIINDPRQVEDRGSYHCKA 276 (978)
Q Consensus 207 ~~g~~~~l~C~~~g~p~~~v~W~~~~~~~~-----~~----~~~~~~~~~~~~~~~-~~~~l~i~~~~~~~d~G~Y~C~a 276 (978)
.+|+++.|.|.....+...++|||...... .. ......+....|..+ .+|+|.|.++ +.+|+|.|+|.+
T Consensus 11 ~~G~~V~L~v~~~p~~~~~~~W~kg~~~~~~~~I~~y~~~~~~~~~gp~~~gR~~~~~ngSL~I~~v-~~~D~G~Y~~~v 89 (105)
T cd05774 11 AEGENVLLLVHNLPENLLAYAWYKGKTVSPNFLIASYIISTNSSTPGPAYSGRETIYPNGSLLIQNV-TQKDTGFYTLQT 89 (105)
T ss_pred cCCCCEEEEecCCCCCceEEEEEcCCCCCCCEEEEEEECCCcccccCcccCCcEEEeCCCcEEEecC-CcccCEEEEEEE
Confidence 458889999965433334999999632111 10 011112233455554 4789999998 999999999999
Q ss_pred EeCceeEEeEEEEEE
Q psy12060 277 SNKFGSIISESVQLA 291 (978)
Q Consensus 277 ~n~~g~~~s~~~~l~ 291 (978)
.+.........++|.
T Consensus 90 ~~~~~~~~~~~v~l~ 104 (105)
T cd05774 90 ITTNFQVEQATVHLQ 104 (105)
T ss_pred EeCCccEEEEEEEEE
Confidence 988754434444443
No 270
>KOG4258|consensus
Probab=98.34 E-value=2.7e-06 Score=93.24 Aligned_cols=142 Identities=15% Similarity=0.261 Sum_probs=99.5
Q ss_pred ceEEEEeeCCeeEEEeecCCC-CCCCceeEEEEEeec--------------cccCceEecccccceeeeecCCceeeEEe
Q psy12060 783 GVQVVEVHKTSATIQWTDGAT-NGRPITHYKIIARTN--------------WNSTWFNVSEHVIGKEVDRYTGRKEASIE 847 (978)
Q Consensus 783 ~~~~~~~~~~~v~l~W~~p~~-~~~~i~~Y~v~~~~~--------------~~~~w~~~~~~~~~~~~~~~~~~~~~~~~ 847 (978)
++.....+.+++.|+|..-.. +-....+|.++|+.. +.+.|.......... +.......-+.+.
T Consensus 493 ~~~~~~~~~dsi~lrW~~~~~~d~r~llg~~~~yKEaP~qNvT~~dg~~aCg~~~W~~~~v~~~~~-~p~~~~~~~~~l~ 571 (1025)
T KOG4258|consen 493 QFSSTVTSADSILLRWERYQPPDMRDLLGFLLHYKEAPFQNVTEEDGRDACGSNSWNVVDVDPPDL-IPNDGTHPGFLLD 571 (1025)
T ss_pred eeeeEEeecceeEEEecccCCcchhhhheeeEeeccCCccccceecCccccccCcceEEeccCCcC-CCccccccceehh
Confidence 344455778999999986221 223578999999864 234565543322210 1111123356788
Q ss_pred eccCCCceeEEEEEEec--CCccCC--CCCCCCCCCCCCCCCCCCCCceeecccccCcEEEEEEeCCCCCCCCCcceEEE
Q psy12060 848 NVLVPWSTYEFKVIAGN--ELGYGE--PSSPSPQYNTPADKPYQAPSRIGGGGGKIGDLSISWEPLPREKQNAPNIYYKI 923 (978)
Q Consensus 848 ~~L~p~~~Y~~~v~A~N--~~G~g~--~s~~~~~~~t~~~~P~~~P~~~~~~~~~~~si~v~W~~p~~~~~~g~i~~Y~i 923 (978)
+ |+|+|.|.+-|++.. .++... .|.+. .++|.++.| ++|+.+-....+++.|.|+|+| |..+||.|+.|.|
T Consensus 572 ~-LkP~TqYAvfVkT~t~t~~~~~~~A~S~I~-YvqT~~~~P-spPl~~ls~snsSsqi~l~W~p--P~~pNG~lt~Ylv 646 (1025)
T KOG4258|consen 572 G-LKPWTQYAVFVKTLTVTEAHEAYEAKSKIG-YVQTLPDIP-SPPLDVLSKSNSSSQILLKWKP--PSQPNGNLTHYLV 646 (1025)
T ss_pred c-CCccceeEEEEeeeehhhhccccccccceE-EEEecCCCC-CCcchhhhccCcchheeEEecC--CCCCCCceeEEEE
Confidence 8 999999999999872 222222 34444 789999999 7898888888888899999998 8899999999999
Q ss_pred EEEecCC
Q psy12060 924 FWRKKND 930 (978)
Q Consensus 924 ~~~~~~~ 930 (978)
.|++...
T Consensus 647 ~wer~~~ 653 (1025)
T KOG4258|consen 647 VWERQAE 653 (1025)
T ss_pred EEEeccC
Confidence 9988763
No 271
>cd05774 Ig_CEACAM_D1 First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM). IG_CEACAM_D1: immunoglobulin (Ig)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the D
Probab=98.33 E-value=3.6e-06 Score=70.88 Aligned_cols=74 Identities=27% Similarity=0.538 Sum_probs=53.6
Q ss_pred ecCCCeEEEEEeeccCCCCeeEEeeCCE-----Ee--------------cCCCcEEEeecCcEEEccccCCCCEEEEEEE
Q psy12060 600 AGEGGNVTIFCNPEAAPKPKFVWKKDGN-----II--------------GSGGRRKIFENGNLLISPVSRDDSGIYSCTA 660 (978)
Q Consensus 600 ~~~g~~~~l~C~~~~~p~~~i~W~~~g~-----~~--------------~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a 660 (978)
+.+|+++.|.|.........+.|+|+.. .+ ....|..+..+|+|.|.+++.+|+|.|+|.+
T Consensus 10 ~~~G~~V~L~v~~~p~~~~~~~W~kg~~~~~~~~I~~y~~~~~~~~~gp~~~gR~~~~~ngSL~I~~v~~~D~G~Y~~~v 89 (105)
T cd05774 10 VAEGENVLLLVHNLPENLLAYAWYKGKTVSPNFLIASYIISTNSSTPGPAYSGRETIYPNGSLLIQNVTQKDTGFYTLQT 89 (105)
T ss_pred ccCCCCEEEEecCCCCCceEEEEEcCCCCCCCEEEEEEECCCcccccCcccCCcEEEeCCCcEEEecCCcccCEEEEEEE
Confidence 6789999999975433334899999621 11 0135666778899999999999999999999
Q ss_pred EeCC-ceeeeeEEE
Q psy12060 661 TNVH-GMDESKGRL 673 (978)
Q Consensus 661 ~n~~-g~~~~~~~l 673 (978)
.+.. ........|
T Consensus 90 ~~~~~~~~~~~v~l 103 (105)
T cd05774 90 ITTNFQVEQATVHL 103 (105)
T ss_pred EeCCccEEEEEEEE
Confidence 9876 333334444
No 272
>cd05881 Ig1_Necl-2 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Ig1_Necl-2: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-2, Necl-2 (also known as cell adhesion molecule 1 (CADM1), SynCAM1, IGSF4A, Tslc1, sgIGSF, and RA175). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-2 is expressed in a wide variety of tissues, and is a
Probab=98.33 E-value=7.3e-06 Score=67.30 Aligned_cols=67 Identities=18% Similarity=0.226 Sum_probs=51.4
Q ss_pred cceeecCCCeEEEEEeeccCCCCeeEEeeCCEEe--------cCCCcEEEee-cC---cEEEccccCCCCEEEEEEEEe
Q psy12060 596 SETYAGEGGNVTIFCNPEAAPKPKFVWKKDGNII--------GSGGRRKIFE-NG---NLLISPVSRDDSGIYSCTATN 662 (978)
Q Consensus 596 ~~~~~~~g~~~~l~C~~~~~p~~~i~W~~~g~~~--------~~~~~~~~~~-~~---~l~i~~~~~~d~G~Y~C~a~n 662 (978)
..+.+.+|++++|.|.+.+.....+.|++.+..+ ..+.|+.... ++ +|.|.+++.+|+|.|.|.+..
T Consensus 5 ~nvtv~~G~ta~L~C~v~~~~~~~v~w~~~~~~~i~~~~~~~~~d~Rf~~~~~~~~~~tL~I~~vq~~D~G~Y~Cqv~t 83 (95)
T cd05881 5 EDVTVVEGEVAIISCRVKNNDDSVIQLLNPNRQTIYFRDVRPLKDSRFQLVNFSSNELRVSLSNVSLSDEGRYFCQLYT 83 (95)
T ss_pred CceEEcCCCcEEEEEEEccCCccEEEEEecCCcEEEecCccccCCcCEEEEeCCCCEEEEEECcCCcccCEEEEEEEEc
Confidence 4566899999999999998776678888765332 2445665543 22 399999999999999999975
No 273
>PF13927 Ig_3: Immunoglobulin domain; PDB: 2D3V_A 1G0X_A 1VDG_A 1P7Q_D 3D2U_H 1UFU_A 1UGN_A 3VH8_H 3OQ3_B 4DKD_C ....
Probab=98.29 E-value=1.3e-06 Score=69.97 Aligned_cols=73 Identities=32% Similarity=0.518 Sum_probs=48.6
Q ss_pred CeeEeCCCceEecCCCccccCcEEEEEEeecCC-CCeEEEEEcccccccccccccCCCCCCceEeecceEEEeCCCCCCC
Q psy12060 190 PYFIKQPTDVVFDLSKRSILNDITLSCYAGGYP-NPSYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVED 268 (978)
Q Consensus 190 P~~~~~p~~~~~~~~~~~~g~~~~l~C~~~g~p-~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~d 268 (978)
|.|...+.......+ .++|+|.+.+.| .+.++|+ +..... ..........+++|.|.++ ..+|
T Consensus 2 P~I~~~~~~~~~~~~------~~~l~C~~~~~~~~~~~~W~-~~~~~~--------~~~~~~~~~~~~~L~i~~v-~~~~ 65 (75)
T PF13927_consen 2 PQISVPPPPVVTSGG------SVTLTCSAEGGPPPPSISWY-DSNPSF--------NSNSRGSSSSNSTLTISNV-TRSD 65 (75)
T ss_dssp SEEEEESTSEEETTE------EEEEEEEESSEESSEEEEEE-TEEEEE--------EEEEEEEEEEEEEEEESSC-CGGG
T ss_pred CEEEEcCCCcEeece------eEEEEEEEccccCCeEEEEE-ecCCce--------eeeeeeccceeeEEEEccC-CHHh
Confidence 667776666654322 299999998877 7899999 111000 0001112234668999887 8999
Q ss_pred CeEEEEEEEe
Q psy12060 269 RGSYHCKASN 278 (978)
Q Consensus 269 ~G~Y~C~a~n 278 (978)
.|.|+|.|.|
T Consensus 66 ~g~y~C~a~N 75 (75)
T PF13927_consen 66 NGTYTCIASN 75 (75)
T ss_dssp TEEEEEEEEE
T ss_pred CcEEEEEEEC
Confidence 9999999987
No 274
>cd05900 Ig_Aggrecan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan. Ig_Aggrecan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan. These aggregates contribute to the tissue's load bearing properties. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Aggrecan has a wide distribution in connective tissue and extracellular matrices. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes.
Probab=98.29 E-value=5.1e-06 Score=70.96 Aligned_cols=75 Identities=15% Similarity=0.254 Sum_probs=53.5
Q ss_pred CCCcEEEEEEEeecC------------CCeeEEEEcCc--cC------------C--CCcee-------eecccEEEeCC
Q psy12060 413 AGDKVRLECVAFGYP------------VPSYNWTRRGS--PL------------P--RNAYF-------ENFNRILTIPN 457 (978)
Q Consensus 413 ~G~~~~l~C~~~g~p------------~~~v~W~~~~~--~l------------~--~~~~~-------~~~~~~L~i~~ 457 (978)
.|++++|.|...... .+.|.|+|... .. . -..+. ...+.+|+|.+
T Consensus 1 ~G~~VtLpC~~~~~~~~~~~~~~~~~~~~~I~W~k~~~g~~~~ii~~~~~~~~~~~~f~~R~sl~~~~~~~~~asL~I~n 80 (112)
T cd05900 1 LGSSLLIPCYFQDPIAKDPGAPTVAPLSPRIKWSFISKEKESVLLVATEGKVRVNTEYLDRVSLPNYPAIPSDATLEITE 80 (112)
T ss_pred CCCcEEEeeEEeCCcCccccccccCCCCCEEEEEEecCCCccEEEEEECCeEEECccccCeEEecccCCCCCCcEEEEee
Confidence 389999999987432 35899998521 10 0 00111 12457899999
Q ss_pred CCCCCCeEEEEEEEeCCCceEEEEEEEEEe
Q psy12060 458 VKVEDQGEYICRASNDRSALESSVTISIQA 487 (978)
Q Consensus 458 ~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~ 487 (978)
++.+|+|.|.|.+.+.....+..+.|.|..
T Consensus 81 l~~sDsG~Y~C~V~~g~~~~~~~v~l~v~g 110 (112)
T cd05900 81 LRSNDSGTYRCEVMHGIEDNYDTVEVQVKG 110 (112)
T ss_pred cccccCEEEEEEEecCCCCceeEEEEEEEe
Confidence 999999999999998777777777777753
No 275
>cd05883 Ig2_Necl-2 Second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Ig2_Necl-2: second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Nectin-like molecules (Necls) have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is expressed in a wide variety of tissues, and is a putative tumour suppressor gene, which is downregulated in aggressive neuroblastoma. Ig domains are likely to participate in ligand binding and recognition.
Probab=98.28 E-value=5.4e-06 Score=65.33 Aligned_cols=71 Identities=18% Similarity=0.358 Sum_probs=52.0
Q ss_pred EEEEEEEee-cCCCeeEEEEcCccCCCCcee--e-----ecccEEEeCCCCCCCCeEEEEEEEeCCC-ceEEEEEEEEEe
Q psy12060 417 VRLECVAFG-YPVPSYNWTRRGSPLPRNAYF--E-----NFNRILTIPNVKVEDQGEYICRASNDRS-ALESSVTISIQA 487 (978)
Q Consensus 417 ~~l~C~~~g-~p~~~v~W~~~~~~l~~~~~~--~-----~~~~~L~i~~~~~~d~G~Y~C~a~n~~g-~~~~~~~l~V~~ 487 (978)
+.|.|.+.| .|.++|+|||++.++...... . ...++|.|..-..+|...|+|+|.|..- ....+..|.|..
T Consensus 2 ~~L~C~s~gSkP~A~I~W~k~~~~l~~~~~~~~~~~~~~t~~S~L~~~p~~eDdG~~~~C~a~~~~l~~~~~~~~L~V~y 81 (82)
T cd05883 2 IELNCTAMASKPAATIRWFKGNKELTGKSTVEETWSRMFTVTSQLMLKVTKEDDGVPVICLVDHPAVKDLQTQRYLEVQY 81 (82)
T ss_pred EEEEEEecCCCCCCEEEEEECCEECcCcccceeccCCCcEEEEEEEEECchhhCCCEEEEEEcCcccCCceeeEEEEEEE
Confidence 689999985 888899999999999764321 1 1235688877666777799999999742 355667777764
No 276
>cd00063 FN3 Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all animal proteins contain the FN3 repeat; including extracellular and intracellular proteins, membrane spanning cytokine receptors, growth hormone receptors, tyrosine phosphatase receptors, and adhesion molecules. FN3-like domains are also found in bacterial glycosyl hydrolases.
Probab=98.25 E-value=1.1e-05 Score=67.56 Aligned_cols=87 Identities=32% Similarity=0.507 Sum_probs=67.4
Q ss_pred CCCCCceEEEEeeCCeeEEEeecCCCCCCCceeEEEEEeeccccCceEecccccceeeeecCCceeeEEeeccCCCceeE
Q psy12060 778 PGLPGGVQVVEVHKTSATIQWTDGATNGRPITHYKIIARTNWNSTWFNVSEHVIGKEVDRYTGRKEASIENVLVPWSTYE 857 (978)
Q Consensus 778 P~~P~~~~~~~~~~~~v~l~W~~p~~~~~~i~~Y~v~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~L~p~~~Y~ 857 (978)
|.+|.++.+......++.|+|.++....+.+..|.|+++......|....... .....+.+.+ |.|++.|.
T Consensus 1 p~~p~~~~~~~~~~~~~~v~W~~~~~~~~~~~~y~v~~~~~~~~~~~~~~~~~--------~~~~~~~i~~-l~p~~~Y~ 71 (93)
T cd00063 1 PSPPTNLRVTDVTSTSVTLSWTPPEDDGGPITGYVVEYREKGSGDWKEVEVTP--------GSETSYTLTG-LKPGTEYE 71 (93)
T ss_pred CcCCCCcEEEEecCCEEEEEECCCCCCCCcceeEEEEEeeCCCCCCEEeeccC--------CcccEEEEcc-ccCCCEEE
Confidence 45677788877788999999999865445678999999876555665543321 2456778889 99999999
Q ss_pred EEEEEecCCccCCCCC
Q psy12060 858 FKVIAGNELGYGEPSS 873 (978)
Q Consensus 858 ~~v~A~N~~G~g~~s~ 873 (978)
|+|+|.+..|.|..+.
T Consensus 72 ~~v~a~~~~~~~~~s~ 87 (93)
T cd00063 72 FRVRAVNGGGESPPSE 87 (93)
T ss_pred EEEEEECCCccCCCcc
Confidence 9999999988887665
No 277
>cd05877 Ig_LP_like Immunoglobulin (Ig)-like domain of human cartilage link protein (LP). Ig_LP_like: immunoglobulin (Ig)-like domain similar to that that found in human cartilage link protein (LP). In cartilage, chondroitin-keratan sulfate proteoglycan (CSPG), aggrecan, forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes.
Probab=98.25 E-value=7.6e-06 Score=70.48 Aligned_cols=75 Identities=21% Similarity=0.387 Sum_probs=54.7
Q ss_pred CCCcEEEEEEEeecC------CCeeEEEEcCcc--------CCC----------Cceee-----ecccEEEeCCCCCCCC
Q psy12060 413 AGDKVRLECVAFGYP------VPSYNWTRRGSP--------LPR----------NAYFE-----NFNRILTIPNVKVEDQ 463 (978)
Q Consensus 413 ~G~~~~l~C~~~g~p------~~~v~W~~~~~~--------l~~----------~~~~~-----~~~~~L~i~~~~~~d~ 463 (978)
.|++++|.|.+...| ...|.|+|.... +.. ..+.. ....+|.|.+++.+|+
T Consensus 1 ~G~~vtL~C~~~~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~sL~I~~v~~~Ds 80 (106)
T cd05877 1 RGGNVTLPCRYHYEPELSAPRKIRVKWTKLESDYLKEEDVLVAIGTRHKSYGSYQGRVFLRRAHDLDASLVITDLRLEDY 80 (106)
T ss_pred CCCcEEEEeEeECCCcCCCCccceEEEEEecCCCCeeEEEEEEcCcEEEeccCccCcEEecCCCCCcEEEEEccCChHHC
Confidence 489999999987553 347999996421 000 01111 1235799999999999
Q ss_pred eEEEEEEEeCCCceEEEEEEEEEe
Q psy12060 464 GEYICRASNDRSALESSVTISIQA 487 (978)
Q Consensus 464 G~Y~C~a~n~~g~~~~~~~l~V~~ 487 (978)
|.|.|.+.+..+.....+.|.|..
T Consensus 81 G~Y~C~v~~~~~~~~~~~~l~v~~ 104 (106)
T cd05877 81 GRYRCEVIDGLEDESVVVALRLRG 104 (106)
T ss_pred EEEEEEEEecccceEEEEEEEEEE
Confidence 999999999888888888888864
No 278
>cd05711 Ig_FcalphaRI Immunoglobulin (IG)-like domain of of FcalphaRI. IG_FcalphaRI : immunoglobulin (IG)-like domain of of FcalphaRI. FcalphaRI (CD89) is an IgA-specific receptor that is expressed on monocytes, eosinophils, neutrophils and macrophages. FcalphaRI mediates IgA-induced immune effector responses such as phagocytosis, antibody-dependent cell-mediated cytotoxicity and respiratory burst. Both monomeric and dimeric IgA can bind to FcalphaRI, and monomeric or dimeric IgA immune complexes can activate phagocytosis and other immune responses through the clustering of FcalphaRI. The Fc RI ectodomain is comprised of two Ig-like domains oriented at about 90 degree to each another.
Probab=98.24 E-value=8e-06 Score=67.94 Aligned_cols=88 Identities=18% Similarity=0.270 Sum_probs=53.8
Q ss_pred CeeEeCCCceEecCCCccccCcEEEEEEeecCCCCeEEEEEcccccccccccccCCCCCCceEeecceEEEeCCCCCCCC
Q psy12060 190 PYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVEDR 269 (978)
Q Consensus 190 P~~~~~p~~~~~~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~d~ 269 (978)
|.|...|..++ ..|++|+|+|.... +...+.|||+|...... .+...... .....+.|.++ +.+|+
T Consensus 2 P~l~a~p~~vV------~~G~~VTL~C~~~~-~~~~f~l~k~g~~~~~~---~~~~~~~~---~~~a~f~I~~~-~~~~~ 67 (94)
T cd05711 2 PFLSAHPSPVV------PSGENVTLQCHSDI-RFDRFILYKEGRSKPVL---HLYEKHHG---GFQASFPLGPV-TPAHA 67 (94)
T ss_pred CEEEecCCCcc------CCCCeEEEEEecCC-CCCEEEEEECCCCCCce---ecccccCC---eEEEEEEecCC-CcccC
Confidence 66667665544 34677999998874 55689999998642110 00000011 12336788887 99999
Q ss_pred eEEEEEEEeCc----eeEEeEEEEEE
Q psy12060 270 GSYHCKASNKF----GSIISESVQLA 291 (978)
Q Consensus 270 G~Y~C~a~n~~----g~~~s~~~~l~ 291 (978)
|.|+|...... -+..|+.+.|.
T Consensus 68 G~Y~C~~~~~~~~~~wS~~Sdpl~l~ 93 (94)
T cd05711 68 GTYRCYGSYNHSLYEWSAPSDPLKIV 93 (94)
T ss_pred EEEEEEEECCCCCccccCCCCCeEEe
Confidence 99999986322 23445555553
No 279
>cd05714 Ig_CSPGs_LP Immunoglobulin (Ig)-like domain of chondroitin sulfate proteoglycans (CSPGs), human cartilage link protein (LP) and similar proteins. Ig_CSPGs_LP: immunoglobulin (Ig)-like domain similar to that found in chondroitin sulfate proteoglycans (CSPGs) and human cartilage link protein (LP). Included in this group are the CSPGs aggrecan, versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue.
Probab=98.24 E-value=9.7e-06 Score=69.78 Aligned_cols=75 Identities=21% Similarity=0.431 Sum_probs=55.3
Q ss_pred CCCcEEEEEEEeecC------CCeeEEEEcC---cc---C--CCCc----------ee-----eecccEEEeCCCCCCCC
Q psy12060 413 AGDKVRLECVAFGYP------VPSYNWTRRG---SP---L--PRNA----------YF-----ENFNRILTIPNVKVEDQ 463 (978)
Q Consensus 413 ~G~~~~l~C~~~g~p------~~~v~W~~~~---~~---l--~~~~----------~~-----~~~~~~L~i~~~~~~d~ 463 (978)
.|++|+|.|.....+ ...|.|+|.. .. + .... +. ...+.+|+|.+++.+|+
T Consensus 1 ~G~~V~L~C~~~~~~~~~~~~~~~i~W~k~~~~~~~~~~v~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~~v~~sD~ 80 (106)
T cd05714 1 LGGNVTLPCRFHLEPALSAPHGPRIKWTKLESDGAKEVDVLVAIGGRVKVYGSGRVRVPLYPADPGDASLVITDLRLEDS 80 (106)
T ss_pred CCCCEEEeEEeECCcccCCCCCcEEEEEEeCCCCCceEEEEEEcCCEEEEcCCCceEEEeeCCCCCcceEEECCCCHHHC
Confidence 389999999987643 4589999973 11 0 0000 00 12346799999999999
Q ss_pred eEEEEEEEeCCCceEEEEEEEEEe
Q psy12060 464 GEYICRASNDRSALESSVTISIQA 487 (978)
Q Consensus 464 G~Y~C~a~n~~g~~~~~~~l~V~~ 487 (978)
|.|.|.+.+..+..+..+.|.|..
T Consensus 81 G~Y~C~v~~~~~~~~~~v~L~V~~ 104 (106)
T cd05714 81 GRYRCEVIDGIEDEQDTVELEVRG 104 (106)
T ss_pred EEEEEEEEcCCCceEEEEEEEEEE
Confidence 999999999877788888888864
No 280
>cd07705 Ig2_Necl-1 Second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). Ig2_Necl-1: second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue and is important to the formation of synapses, axon bundles, and myel
Probab=98.20 E-value=8.2e-06 Score=65.84 Aligned_cols=67 Identities=16% Similarity=0.275 Sum_probs=42.9
Q ss_pred EEEEEEeec-CCCCeEEEEEcccccccccccccCCCCCC-ceEeecceEEEeCCCCCCCCeEEEEEEEeCce
Q psy12060 212 ITLSCYAGG-YPNPSYEWFKEDYVQDRLVANLIDPLSDK-RFTLSGGNLIINDPRQVEDRGSYHCKASNKFG 281 (978)
Q Consensus 212 ~~l~C~~~g-~p~~~v~W~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~i~~~~~~~d~G~Y~C~a~n~~g 281 (978)
++|+|.+.| +|.++|+|+|+|.++..... .+.+..+. .+. ....|.+... ..+|...|+|+|.+...
T Consensus 2 ~~LtC~a~g~~P~~~ItW~k~g~~l~~~~~-~~~~~~~~~t~~-~~s~l~~~~~-~~d~g~~~tC~v~h~~l 70 (83)
T cd07705 2 AKLRCTSSGSKPAANIKWRKGDQELEGAPT-SVLEDGNGKTFT-VSSSVEFQVT-REDDGAEITCSVGHESL 70 (83)
T ss_pred EEEEEEecCccCCCEeEEEECCEECCCcce-eEEECCCCCEEE-EEEEEEEEec-chhCCCEEEEEEECccc
Confidence 789999975 69999999999987643211 11111121 221 1234555443 56788999999998763
No 281
>cd05877 Ig_LP_like Immunoglobulin (Ig)-like domain of human cartilage link protein (LP). Ig_LP_like: immunoglobulin (Ig)-like domain similar to that that found in human cartilage link protein (LP). In cartilage, chondroitin-keratan sulfate proteoglycan (CSPG), aggrecan, forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes.
Probab=98.20 E-value=1.1e-05 Score=69.41 Aligned_cols=83 Identities=24% Similarity=0.299 Sum_probs=53.2
Q ss_pred cCcEEEEEEeecCC------CCeEEEEEccccc-cc-ccc------cccCCCCCCceEee-----cceEEEeCCCCCCCC
Q psy12060 209 LNDITLSCYAGGYP------NPSYEWFKEDYVQ-DR-LVA------NLIDPLSDKRFTLS-----GGNLIINDPRQVEDR 269 (978)
Q Consensus 209 g~~~~l~C~~~g~p------~~~v~W~~~~~~~-~~-~~~------~~~~~~~~~~~~~~-----~~~l~i~~~~~~~d~ 269 (978)
|++|+|.|.....| ...|.|+|....- .. ... .........|+.+. +.+|.|.++ +.+|+
T Consensus 2 G~~vtL~C~~~~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~sL~I~~v-~~~Ds 80 (106)
T cd05877 2 GGNVTLPCRYHYEPELSAPRKIRVKWTKLESDYLKEEDVLVAIGTRHKSYGSYQGRVFLRRAHDLDASLVITDL-RLEDY 80 (106)
T ss_pred CCcEEEEeEeECCCcCCCCccceEEEEEecCCCCeeEEEEEEcCcEEEeccCccCcEEecCCCCCcEEEEEccC-ChHHC
Confidence 78899999987653 3579999975210 00 000 01111123455542 347999998 99999
Q ss_pred eEEEEEEEeCceeEEeEEEEEEEe
Q psy12060 270 GSYHCKASNKFGSIISESVQLAFG 293 (978)
Q Consensus 270 G~Y~C~a~n~~g~~~s~~~~l~v~ 293 (978)
|.|+|.+.+..+.. ...++|.|.
T Consensus 81 G~Y~C~v~~~~~~~-~~~~~l~v~ 103 (106)
T cd05877 81 GRYRCEVIDGLEDE-SVVVALRLR 103 (106)
T ss_pred EEEEEEEEecccce-EEEEEEEEE
Confidence 99999999877653 456666654
No 282
>cd05761 Ig2_Necl-1-4_like Second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-4 (also known as cell adhesion molecules CADM3, CADM1, CADM2, and CADM4, respectively). Ig2_Necl-1-4_like: domain similar to the second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), Necl-3 (CADM2) and Necl-4 (CADM4). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cel
Probab=98.20 E-value=7.9e-06 Score=66.04 Aligned_cols=68 Identities=21% Similarity=0.370 Sum_probs=43.4
Q ss_pred EEEEEEee-cCCCCeEEEEEcccccccccccccCCCCCCceEeecceEEEeCCCCCCCCeEEEEEEEeCcee
Q psy12060 212 ITLSCYAG-GYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVEDRGSYHCKASNKFGS 282 (978)
Q Consensus 212 ~~l~C~~~-g~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~d~G~Y~C~a~n~~g~ 282 (978)
+.|+|.+. +.|.+.|+|||+|.++.........+ .+..+.. ...|.+... ..+|.+.|+|+|.|....
T Consensus 2 ~~L~C~~~~~~P~~~v~W~~~~~~l~~~~~~~~~~-~~~~~~~-~s~l~~~~~-~~d~g~~~~C~v~h~~l~ 70 (82)
T cd05761 2 VELTCTSSGSKPAATIRWFKGDKELKGVKLKEEDE-NGKTFTV-TSSLRFQVD-REDDGAPIICRVDHPALK 70 (82)
T ss_pred EEEEEEecCcCcCCeEEEEECCEEccCceeeEecC-CCCEEEE-EEEEEEEcc-hhhCCCEEEEEEeChhcC
Confidence 79999996 46999999999998764322111111 1122222 234555443 566778999999987643
No 283
>cd05775 Ig_SLAM-CD84_like_N N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like. Ig_SLAM-CD84_like_N: The N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like. The SLAM family is a group of immune-cell specific receptors that can regulate both adaptive and innate immune responses. Members of this group include proteins such as CD84, SLAM (CD150), Ly-9 (CD229), NTB-A (ly-108, SLAM6), 19A (CRACC), and SLAMF9. The genes coding for the SLAM family are nested on chromosome 1, in humans at 1q23, and in mice at 1H2. The SLAM family is a subset of the CD2 family, which also includes CD2 and CD58 located on chromosome 1 at 1p13 in humans. In mice, CD2 is located on chromosome 3, and there is no CD58 homolog. The SLAM family proteins are organized as an extracellular domain with either two or four Ig-like domains, a single transmembrane segment, and a cytoplasmic region
Probab=98.18 E-value=5.6e-06 Score=69.44 Aligned_cols=84 Identities=23% Similarity=0.266 Sum_probs=56.2
Q ss_pred ccCcEEEEEEeec-CCCCeEEEEEcccccc-ccc------ccccCCCCCCceEee--cceEEEeCCCCCCCCeEEEEEEE
Q psy12060 208 ILNDITLSCYAGG-YPNPSYEWFKEDYVQD-RLV------ANLIDPLSDKRFTLS--GGNLIINDPRQVEDRGSYHCKAS 277 (978)
Q Consensus 208 ~g~~~~l~C~~~g-~p~~~v~W~~~~~~~~-~~~------~~~~~~~~~~~~~~~--~~~l~i~~~~~~~d~G~Y~C~a~ 277 (978)
+|++|+|.|.... .....+.|+|....+- ... .....+....|+.+. +.+|.|.++ +.+|+|.|.|.+.
T Consensus 3 ~G~sVtL~c~~~~~~~~~~v~W~~~~~~~i~~~~~~~~~~~~~~~~~f~~R~~~~~~~~sL~I~~~-~~~DsG~Y~c~v~ 81 (97)
T cd05775 3 LGGSVTLPLNIPDGTEIESITWSFNTSLAIITPGEETAPEIIVTDPSYKERVNFSQNDYSLQISNL-KMEDAGSYRAEIN 81 (97)
T ss_pred cCCeEEEeCCCCCCcEEEEEEEecCCEeEEEecCCCCCCccEEeCCCceeeEEecCCceeEEECCC-chHHCEEEEEEEE
Confidence 5889999998764 4456899999742211 000 001111122344442 468999998 9999999999999
Q ss_pred eCceeEEeEEEEEEE
Q psy12060 278 NKFGSIISESVQLAF 292 (978)
Q Consensus 278 n~~g~~~s~~~~l~v 292 (978)
+..|......+.|.|
T Consensus 82 ~~~~~~~~~~f~L~v 96 (97)
T cd05775 82 TKNGVTITKEFTLHI 96 (97)
T ss_pred cCCCCeEEEEEEEEe
Confidence 888877666666665
No 284
>cd05741 Ig_CEACAM_D1_like First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) and similar proteins. Ig_CEACAM_D1_like : immunoglobulin (IG)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily-like. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surf
Probab=98.15 E-value=8.2e-06 Score=68.26 Aligned_cols=71 Identities=17% Similarity=0.206 Sum_probs=50.5
Q ss_pred CCcEEEEEEEeecCCCeeEEEEcCccCCCC------------------ce-eeecccEEEeCCCCCCCCeEEEEEEEeCC
Q psy12060 414 GDKVRLECVAFGYPVPSYNWTRRGSPLPRN------------------AY-FENFNRILTIPNVKVEDQGEYICRASNDR 474 (978)
Q Consensus 414 G~~~~l~C~~~g~p~~~v~W~~~~~~l~~~------------------~~-~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~ 474 (978)
|++|+|.|.+...+...|.|+++....... .+ ....+.+|.|.+++.+|+|.|+|.+....
T Consensus 1 G~~VtL~c~~~~~~~~~i~W~~~~~~~~~~~i~~~~~~~~~~~~~~~~~R~~~~~~~sL~I~~l~~~DsG~Y~c~v~~~~ 80 (92)
T cd05741 1 GESVTLPVSNLPENLQEITWYKGKDKSVEAEIASYIATNSTVFGPAYSGRETIYPNGSLLIQNLTKEDSGTYTLQIISTN 80 (92)
T ss_pred CCcEEEEcccCCCCCEEEEEECCCCCCcceEEEEEecCCceeECCCcCCeEEEcCCceEEEccCCchhcEEEEEEEEcCC
Confidence 789999998876555689999976443110 00 11234789999999999999999999876
Q ss_pred Cc-eEEEEEEE
Q psy12060 475 SA-LESSVTIS 484 (978)
Q Consensus 475 g~-~~~~~~l~ 484 (978)
+. ....+.|.
T Consensus 81 ~~~~~~~~~l~ 91 (92)
T cd05741 81 GVTENAKFFLR 91 (92)
T ss_pred CcEEEEEEEEE
Confidence 43 34455554
No 285
>cd05900 Ig_Aggrecan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan. Ig_Aggrecan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan. These aggregates contribute to the tissue's load bearing properties. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Aggrecan has a wide distribution in connective tissue and extracellular matrices. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes.
Probab=98.14 E-value=1.9e-05 Score=67.49 Aligned_cols=83 Identities=18% Similarity=0.301 Sum_probs=51.9
Q ss_pred ccCcEEEEEEeecCC------------CCeEEEEEccc--ccccc----cccccCCCCCCceEe-------ecceEEEeC
Q psy12060 208 ILNDITLSCYAGGYP------------NPSYEWFKEDY--VQDRL----VANLIDPLSDKRFTL-------SGGNLIIND 262 (978)
Q Consensus 208 ~g~~~~l~C~~~g~p------------~~~v~W~~~~~--~~~~~----~~~~~~~~~~~~~~~-------~~~~l~i~~ 262 (978)
+|++|+|.|...... .+.|.|+|... +..-+ ....+......|+.+ .+.+|.|.+
T Consensus 1 ~G~~VtLpC~~~~~~~~~~~~~~~~~~~~~I~W~k~~~g~~~~ii~~~~~~~~~~~~f~~R~sl~~~~~~~~~asL~I~n 80 (112)
T cd05900 1 LGSSLLIPCYFQDPIAKDPGAPTVAPLSPRIKWSFISKEKESVLLVATEGKVRVNTEYLDRVSLPNYPAIPSDATLEITE 80 (112)
T ss_pred CCCcEEEeeEEeCCcCccccccccCCCCCEEEEEEecCCCccEEEEEECCeEEECccccCeEEecccCCCCCCcEEEEee
Confidence 478899999986432 36999999531 11000 111112223335554 355899999
Q ss_pred CCCCCCCeEEEEEEEeCceeEEeEEEEEEE
Q psy12060 263 PRQVEDRGSYHCKASNKFGSIISESVQLAF 292 (978)
Q Consensus 263 ~~~~~d~G~Y~C~a~n~~g~~~s~~~~l~v 292 (978)
+ +.+|+|.|+|.+.+.... .+..+.|.|
T Consensus 81 l-~~sDsG~Y~C~V~~g~~~-~~~~v~l~v 108 (112)
T cd05900 81 L-RSNDSGTYRCEVMHGIED-NYDTVEVQV 108 (112)
T ss_pred c-ccccCEEEEEEEecCCCC-ceeEEEEEE
Confidence 7 999999999999966433 234555554
No 286
>cd05714 Ig_CSPGs_LP Immunoglobulin (Ig)-like domain of chondroitin sulfate proteoglycans (CSPGs), human cartilage link protein (LP) and similar proteins. Ig_CSPGs_LP: immunoglobulin (Ig)-like domain similar to that found in chondroitin sulfate proteoglycans (CSPGs) and human cartilage link protein (LP). Included in this group are the CSPGs aggrecan, versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue.
Probab=98.11 E-value=2e-05 Score=67.79 Aligned_cols=83 Identities=23% Similarity=0.398 Sum_probs=52.6
Q ss_pred cCcEEEEEEeecCC------CCeEEEEEcc--ccccc-c-----cccccCCCCCCceEe-----ecceEEEeCCCCCCCC
Q psy12060 209 LNDITLSCYAGGYP------NPSYEWFKED--YVQDR-L-----VANLIDPLSDKRFTL-----SGGNLIINDPRQVEDR 269 (978)
Q Consensus 209 g~~~~l~C~~~g~p------~~~v~W~~~~--~~~~~-~-----~~~~~~~~~~~~~~~-----~~~~l~i~~~~~~~d~ 269 (978)
|++|+|.|.....+ ...|.|+|.. ..-.. . ...........+... .+.+|.|.++ +.+|+
T Consensus 2 G~~V~L~C~~~~~~~~~~~~~~~i~W~k~~~~~~~~~~v~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~~v-~~sD~ 80 (106)
T cd05714 2 GGNVTLPCRFHLEPALSAPHGPRIKWTKLESDGAKEVDVLVAIGGRVKVYGSGRVRVPLYPADPGDASLVITDL-RLEDS 80 (106)
T ss_pred CCCEEEeEEeECCcccCCCCCcEEEEEEeCCCCCceEEEEEEcCCEEEEcCCCceEEEeeCCCCCcceEEECCC-CHHHC
Confidence 78899999987653 4699999973 11000 0 000111112223332 2458999997 99999
Q ss_pred eEEEEEEEeCceeEEeEEEEEEEe
Q psy12060 270 GSYHCKASNKFGSIISESVQLAFG 293 (978)
Q Consensus 270 G~Y~C~a~n~~g~~~s~~~~l~v~ 293 (978)
|.|+|.+.+..+. ....++|.|.
T Consensus 81 G~Y~C~v~~~~~~-~~~~v~L~V~ 103 (106)
T cd05714 81 GRYRCEVIDGIED-EQDTVELEVR 103 (106)
T ss_pred EEEEEEEEcCCCc-eEEEEEEEEE
Confidence 9999999987554 3566777664
No 287
>cd05878 Ig_Aggrecan_like Immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG). Ig_Aggrecan_like: immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG)s. Included in this group are the Ig domains of other CSPGs: versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substi
Probab=98.11 E-value=2.1e-05 Score=67.67 Aligned_cols=74 Identities=19% Similarity=0.355 Sum_probs=53.9
Q ss_pred CCcEEEEEEEeecC----------CCeeEEEEcC--ccCC-----------C---Cceee-------ecccEEEeCCCCC
Q psy12060 414 GDKVRLECVAFGYP----------VPSYNWTRRG--SPLP-----------R---NAYFE-------NFNRILTIPNVKV 460 (978)
Q Consensus 414 G~~~~l~C~~~g~p----------~~~v~W~~~~--~~l~-----------~---~~~~~-------~~~~~L~i~~~~~ 460 (978)
|++++|.|.....+ ...|.|+|.. ..+. . ..+.. .....|+|.+++.
T Consensus 2 G~~V~LpC~~~~~~~~~~~~~~~~~~~i~W~k~~~~~~~~v~~~~~~~~~~~~~f~gR~~~~~~~~~~~~asL~I~~l~~ 81 (110)
T cd05878 2 SSSVLLPCYFTLPPALPPPSNAPESPRIKWTKLSGQKEVTVLVAQDGVVKVGQEYQGRVSLPNYPENRGDASLEISRLRS 81 (110)
T ss_pred CCCEEEeeEeeCCccccccccCCCCCEEEEEEecCCCcEEEEEEECCEEEecccccCeEEeccCCCCCCcEEEEECCCCh
Confidence 89999999987543 2579999952 1110 0 01111 2346799999999
Q ss_pred CCCeEEEEEEEeCCCceEEEEEEEEEe
Q psy12060 461 EDQGEYICRASNDRSALESSVTISIQA 487 (978)
Q Consensus 461 ~d~G~Y~C~a~n~~g~~~~~~~l~V~~ 487 (978)
+|+|.|.|.+.......+..+.|.|..
T Consensus 82 sD~G~Y~C~v~~~~~~~~~~v~l~V~g 108 (110)
T cd05878 82 SDSGVYRCEVMHGIEDEQDTVPLEVTG 108 (110)
T ss_pred hhCEEEEEEEEeCCCcceEEEEEEEEE
Confidence 999999999999777788888888864
No 288
>cd05713 Ig_MOG_like Immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG). Ig_MOG_like: immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG). MOG, a minor component of the myelin sheath, is an important CNS-specific autoantigen, linked to the pathogenesis of multiple sclerosis (MS) and experimental autoimmune encephalomyelitis (EAE). It is a transmembrane protein having an extracellular Ig domain. MOG is expressed in the CNS on the outermost lamellae of the myelin sheath, and on the surface of oligodendrocytes, and may participate in the completion, compaction, and/or maintenance of myelin. This group also includes butyrophilin (BTN). BTN is the most abundant protein in bovine milk-fat globule membrane (MFGM).
Probab=98.11 E-value=1.8e-05 Score=67.29 Aligned_cols=72 Identities=24% Similarity=0.296 Sum_probs=49.9
Q ss_pred CCcEEEEEEEeecCC---CeeEEEEcCcc-----------CCC------Cceee-------ecccEEEeCCCCCCCCeEE
Q psy12060 414 GDKVRLECVAFGYPV---PSYNWTRRGSP-----------LPR------NAYFE-------NFNRILTIPNVKVEDQGEY 466 (978)
Q Consensus 414 G~~~~l~C~~~g~p~---~~v~W~~~~~~-----------l~~------~~~~~-------~~~~~L~i~~~~~~d~G~Y 466 (978)
|++++|.|....... ..+.|+|.... ... ..+.. ....+|.|.+++.+|+|.|
T Consensus 1 G~~v~L~C~~~~~~~~~~~~v~W~k~~~~~~v~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y 80 (100)
T cd05713 1 GEDAELPCHLSPKMSAEHMEVRWFRSQFSPAVHLYRDGQDQYGEQMPEYRGRTELLKDAIAEGSVALRIHNVRASDEGLY 80 (100)
T ss_pred CCcEEEEeEEcCCCCCCeeEEEEEECCCceeEEEEcCCcccccccCccccceEEeecccccCCcEEEEEEcCChhhCEEE
Confidence 789999999863211 26888885421 110 01111 1235799999999999999
Q ss_pred EEEEEeCCCceEEEEEEEE
Q psy12060 467 ICRASNDRSALESSVTISI 485 (978)
Q Consensus 467 ~C~a~n~~g~~~~~~~l~V 485 (978)
+|.+.+..+..+..+.|.|
T Consensus 81 ~C~v~~~~~~~~~~i~l~v 99 (100)
T cd05713 81 TCFFQSDGFYEEATVELKV 99 (100)
T ss_pred EEEEecCCcEEEEEEEEEE
Confidence 9999998777777777766
No 289
>cd05718 Ig1_PVR_like First immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins. Ig1_PVR_like: domain similar to the first immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), that result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane, may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus "c
Probab=98.10 E-value=2.3e-05 Score=66.44 Aligned_cols=81 Identities=20% Similarity=0.314 Sum_probs=50.0
Q ss_pred CcEEEEEEeecCC---CCeEEEEEcccccccc-------cccccCCCCCCceEe-----ecceEEEeCCCCCCCCeEEEE
Q psy12060 210 NDITLSCYAGGYP---NPSYEWFKEDYVQDRL-------VANLIDPLSDKRFTL-----SGGNLIINDPRQVEDRGSYHC 274 (978)
Q Consensus 210 ~~~~l~C~~~g~p---~~~v~W~~~~~~~~~~-------~~~~~~~~~~~~~~~-----~~~~l~i~~~~~~~d~G~Y~C 274 (978)
++|+|.|.....+ ...|.|+|....-... ....+.+....|..+ .+.+|.|.++ +.+|+|.|.|
T Consensus 1 ~~v~L~C~~~~~~~~~~~~v~W~k~~~~~~~~i~~~~~~~~~~~~~~~~~R~~~~~~~~~~~sL~I~~v-~~~D~G~Y~C 79 (98)
T cd05718 1 ESVTLECSFPVPGPVQITQVTWMKITGGSKQNIAVFHPQYGISIPPSYEGRVSFLNSSLEDATISISNL-RLEDEGNYIC 79 (98)
T ss_pred CCEEEEeEeeCCCCceEEEEEEeeECCCCCEEEEEEecCCCcccCcCcCceEEEeCCCCCceEEEEccC-CcccCEEEEE
Confidence 3589999987654 3489999976421000 001111222334433 2458999998 9999999999
Q ss_pred EEEe-CceeEEeEEEEEEE
Q psy12060 275 KASN-KFGSIISESVQLAF 292 (978)
Q Consensus 275 ~a~n-~~g~~~s~~~~l~v 292 (978)
.+.+ ..|+. ...+.|.|
T Consensus 80 ~v~~~~~g~~-~~~~~l~V 97 (98)
T cd05718 80 EFATFPQGNR-QKVTTLTV 97 (98)
T ss_pred EEEeCCCCcE-EEEEEEEe
Confidence 9975 44553 34555554
No 290
>cd05884 Ig2_Necl-3 Second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Ig2_Necl-3: second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-3 has been shown to accumulate in tissues of the central and peripheral nervous system, where it is expressed in ependymal cells and myelinated axons. It is observed at the interface between the axon shaft and the myelin sheath. Ig domains are likely to participate in ligand binding and recognition.
Probab=98.10 E-value=1.6e-05 Score=64.05 Aligned_cols=67 Identities=21% Similarity=0.367 Sum_probs=44.4
Q ss_pred EEEEEEeec-CCCCeEEEEEcccccccccccccCCCCCCceEeecceEEEeCCCCCCCCeEEEEEEEeCc
Q psy12060 212 ITLSCYAGG-YPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVEDRGSYHCKASNKF 280 (978)
Q Consensus 212 ~~l~C~~~g-~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~d~G~Y~C~a~n~~ 280 (978)
++|.|.+.| +|.+.|+|+|||.++.........+..+..+. ....|.+... ..+|...|+|+|.+..
T Consensus 2 ~~LtC~a~gf~P~~~itW~kng~~l~~~~~~~~~~~~~~t~~-~~s~L~~~~~-~~d~g~~ytC~v~h~~ 69 (83)
T cd05884 2 MQLTCKTSGSKPAADIRWFKNDKEIKDVKYLKEEDANRKTFT-VSSTLDFRVD-RSDDGVAIICRVDHES 69 (83)
T ss_pred EEEEEEeCCccCCCEEEEEECCEECcCceeeEeeCCCCCEEE-EEEEEEEEcc-cccCCCEEEEEEechh
Confidence 789999975 88899999999988654322222222222222 2335666543 5677889999999865
No 291
>cd05718 Ig1_PVR_like First immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins. Ig1_PVR_like: domain similar to the first immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), that result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane, may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus "c
Probab=98.08 E-value=2.2e-05 Score=66.54 Aligned_cols=71 Identities=23% Similarity=0.472 Sum_probs=51.0
Q ss_pred CcEEEEEEEeecC---CCeeEEEEcCcc---------------CCC--Ccee--ee---cccEEEeCCCCCCCCeEEEEE
Q psy12060 415 DKVRLECVAFGYP---VPSYNWTRRGSP---------------LPR--NAYF--EN---FNRILTIPNVKVEDQGEYICR 469 (978)
Q Consensus 415 ~~~~l~C~~~g~p---~~~v~W~~~~~~---------------l~~--~~~~--~~---~~~~L~i~~~~~~d~G~Y~C~ 469 (978)
++|+|.|.....+ ...|.|+|.... +.. ..+. .. .+.+|.|.+++.+|+|.|.|.
T Consensus 1 ~~v~L~C~~~~~~~~~~~~v~W~k~~~~~~~~i~~~~~~~~~~~~~~~~~R~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~ 80 (98)
T cd05718 1 ESVTLECSFPVPGPVQITQVTWMKITGGSKQNIAVFHPQYGISIPPSYEGRVSFLNSSLEDATISISNLRLEDEGNYICE 80 (98)
T ss_pred CCEEEEeEeeCCCCceEEEEEEeeECCCCCEEEEEEecCCCcccCcCcCceEEEeCCCCCceEEEEccCCcccCEEEEEE
Confidence 5799999987643 347999996532 000 0111 11 346899999999999999999
Q ss_pred EEe-CCCceEEEEEEEE
Q psy12060 470 ASN-DRSALESSVTISI 485 (978)
Q Consensus 470 a~n-~~g~~~~~~~l~V 485 (978)
+.. ..|...+.+.|.|
T Consensus 81 v~~~~~g~~~~~~~l~V 97 (98)
T cd05718 81 FATFPQGNRQKVTTLTV 97 (98)
T ss_pred EEeCCCCcEEEEEEEEe
Confidence 975 6688888888877
No 292
>PF13927 Ig_3: Immunoglobulin domain; PDB: 2D3V_A 1G0X_A 1VDG_A 1P7Q_D 3D2U_H 1UFU_A 1UGN_A 3VH8_H 3OQ3_B 4DKD_C ....
Probab=98.08 E-value=3.3e-06 Score=67.55 Aligned_cols=59 Identities=19% Similarity=0.338 Sum_probs=41.8
Q ss_pred CeEEEeCCCCCCCCceEEEecccccccccccceEEEeeCCcEEEeeeeeecceeeEEEEEe
Q psy12060 312 GKAMFCDPPTNYPGVNYYWARDYFPNFVEEDKRVFVSYDGALYFSALEQIDAGNYSCNVQS 372 (978)
Q Consensus 312 ~~~l~C~~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~n 372 (978)
+++|.|.+..+.+.+.|+|+..... ............+.|.|.++..+|.|.|+|.|+|
T Consensus 17 ~~~l~C~~~~~~~~~~~~W~~~~~~--~~~~~~~~~~~~~~L~i~~v~~~~~g~y~C~a~N 75 (75)
T PF13927_consen 17 SVTLTCSAEGGPPPPSISWYDSNPS--FNSNSRGSSSSNSTLTISNVTRSDNGTYTCIASN 75 (75)
T ss_dssp EEEEEEEESSEESSEEEEEETEEEE--EEEEEEEEEEEEEEEEESSCCGGGTEEEEEEEEE
T ss_pred eEEEEEEEccccCCeEEEEEecCCc--eeeeeeeccceeeEEEEccCCHHhCcEEEEEEEC
Confidence 3999999966655899999921111 1112222334456799999999999999999986
No 293
>cd05713 Ig_MOG_like Immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG). Ig_MOG_like: immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG). MOG, a minor component of the myelin sheath, is an important CNS-specific autoantigen, linked to the pathogenesis of multiple sclerosis (MS) and experimental autoimmune encephalomyelitis (EAE). It is a transmembrane protein having an extracellular Ig domain. MOG is expressed in the CNS on the outermost lamellae of the myelin sheath, and on the surface of oligodendrocytes, and may participate in the completion, compaction, and/or maintenance of myelin. This group also includes butyrophilin (BTN). BTN is the most abundant protein in bovine milk-fat globule membrane (MFGM).
Probab=98.07 E-value=3.1e-05 Score=65.88 Aligned_cols=82 Identities=20% Similarity=0.224 Sum_probs=49.7
Q ss_pred cCcEEEEEEeecCCC---CeEEEEEcccccc--cccccc-----cCCCCCCceEee-------cceEEEeCCCCCCCCeE
Q psy12060 209 LNDITLSCYAGGYPN---PSYEWFKEDYVQD--RLVANL-----IDPLSDKRFTLS-------GGNLIINDPRQVEDRGS 271 (978)
Q Consensus 209 g~~~~l~C~~~g~p~---~~v~W~~~~~~~~--~~~~~~-----~~~~~~~~~~~~-------~~~l~i~~~~~~~d~G~ 271 (978)
|++|+|.|....... ..+.|+|...... ...... .......|.... ..+|.|.++ +.+|+|.
T Consensus 1 G~~v~L~C~~~~~~~~~~~~v~W~k~~~~~~v~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v-~~~D~G~ 79 (100)
T cd05713 1 GEDAELPCHLSPKMSAEHMEVRWFRSQFSPAVHLYRDGQDQYGEQMPEYRGRTELLKDAIAEGSVALRIHNV-RASDEGL 79 (100)
T ss_pred CCcEEEEeEEcCCCCCCeeEEEEEECCCceeEEEEcCCcccccccCccccceEEeecccccCCcEEEEEEcC-ChhhCEE
Confidence 677999999863222 3789998652110 000000 011112344331 247999998 9999999
Q ss_pred EEEEEEeCceeEEeEEEEEEE
Q psy12060 272 YHCKASNKFGSIISESVQLAF 292 (978)
Q Consensus 272 Y~C~a~n~~g~~~s~~~~l~v 292 (978)
|+|.+.|..+. ....++|+|
T Consensus 80 Y~C~v~~~~~~-~~~~i~l~v 99 (100)
T cd05713 80 YTCFFQSDGFY-EEATVELKV 99 (100)
T ss_pred EEEEEecCCcE-EEEEEEEEE
Confidence 99999987665 445566655
No 294
>cd05775 Ig_SLAM-CD84_like_N N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like. Ig_SLAM-CD84_like_N: The N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like. The SLAM family is a group of immune-cell specific receptors that can regulate both adaptive and innate immune responses. Members of this group include proteins such as CD84, SLAM (CD150), Ly-9 (CD229), NTB-A (ly-108, SLAM6), 19A (CRACC), and SLAMF9. The genes coding for the SLAM family are nested on chromosome 1, in humans at 1q23, and in mice at 1H2. The SLAM family is a subset of the CD2 family, which also includes CD2 and CD58 located on chromosome 1 at 1p13 in humans. In mice, CD2 is located on chromosome 3, and there is no CD58 homolog. The SLAM family proteins are organized as an extracellular domain with either two or four Ig-like domains, a single transmembrane segment, and a cytoplasmic region
Probab=98.05 E-value=8.6e-06 Score=68.34 Aligned_cols=79 Identities=22% Similarity=0.199 Sum_probs=52.0
Q ss_pred ecccCeEEEeCCCCCCCCceEEEecccccccccc---------------cceEEEee-CCcEEEeeeeeecceeeEEEEE
Q psy12060 308 NQNWGKAMFCDPPTNYPGVNYYWARDYFPNFVEE---------------DKRVFVSY-DGALYFSALEQIDAGNYSCNVQ 371 (978)
Q Consensus 308 ~~~~~~~l~C~~~~~~p~~~i~W~~~~~~~~~~~---------------~~~~~~~~-~~~L~i~~~~~~d~G~Y~C~~~ 371 (978)
..|++++|.|....+.....+.|+|......... ..|+.+.. +++|.|.+++.+|+|.|.|.+.
T Consensus 2 ~~G~sVtL~c~~~~~~~~~~v~W~~~~~~~i~~~~~~~~~~~~~~~~~f~~R~~~~~~~~sL~I~~~~~~DsG~Y~c~v~ 81 (97)
T cd05775 2 ILGGSVTLPLNIPDGTEIESITWSFNTSLAIITPGEETAPEIIVTDPSYKERVNFSQNDYSLQISNLKMEDAGSYRAEIN 81 (97)
T ss_pred ccCCeEEEeCCCCCCcEEEEEEEecCCEeEEEecCCCCCCccEEeCCCceeeEEecCCceeEEECCCchHHCEEEEEEEE
Confidence 3688999999875434456799998642221111 12444444 3689999999999999999998
Q ss_pred eecccccccCCceeEEE
Q psy12060 372 SKVSDTGRNGPFFPLKV 388 (978)
Q Consensus 372 n~~~~~~~~~~~~~l~V 388 (978)
+..+... ...+.|.|
T Consensus 82 ~~~~~~~--~~~f~L~v 96 (97)
T cd05775 82 TKNGVTI--TKEFTLHI 96 (97)
T ss_pred cCCCCeE--EEEEEEEe
Confidence 8764322 22355554
No 295
>cd07705 Ig2_Necl-1 Second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). Ig2_Necl-1: second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue and is important to the formation of synapses, axon bundles, and myel
Probab=98.05 E-value=1.2e-05 Score=64.87 Aligned_cols=64 Identities=14% Similarity=0.227 Sum_probs=42.6
Q ss_pred eEEEeCCCCCCCCceEEEecccccccccccceEEEeeC-Cc------EEEeeeeeecceeeEEEEEeecccc
Q psy12060 313 KAMFCDPPTNYPGVNYYWARDYFPNFVEEDKRVFVSYD-GA------LYFSALEQIDAGNYSCNVQSKVSDT 377 (978)
Q Consensus 313 ~~l~C~~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~-~~------L~i~~~~~~d~G~Y~C~~~n~~~~~ 377 (978)
++|+|.+.+++|++.|+|+|+|.++.... .......+ ++ |.|.....+|...|+|+|.+.....
T Consensus 2 ~~LtC~a~g~~P~~~ItW~k~g~~l~~~~-~~~~~~~~~~t~~~~s~l~~~~~~~d~g~~~tC~v~h~~l~~ 72 (83)
T cd07705 2 AKLRCTSSGSKPAANIKWRKGDQELEGAP-TSVLEDGNGKTFTVSSSVEFQVTREDDGAEITCSVGHESLHD 72 (83)
T ss_pred EEEEEEecCccCCCEeEEEECCEECCCcc-eeEEECCCCCEEEEEEEEEEEecchhCCCEEEEEEECcccCC
Confidence 57999998888999999999997753221 12222223 23 3333334456679999999986543
No 296
>cd05878 Ig_Aggrecan_like Immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG). Ig_Aggrecan_like: immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG)s. Included in this group are the Ig domains of other CSPGs: versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substi
Probab=98.03 E-value=4.1e-05 Score=65.87 Aligned_cols=84 Identities=21% Similarity=0.351 Sum_probs=52.6
Q ss_pred ccCcEEEEEEeecCC----------CCeEEEEEcc--cccccc----cccccCCCCCCceEe-------ecceEEEeCCC
Q psy12060 208 ILNDITLSCYAGGYP----------NPSYEWFKED--YVQDRL----VANLIDPLSDKRFTL-------SGGNLIINDPR 264 (978)
Q Consensus 208 ~g~~~~l~C~~~g~p----------~~~v~W~~~~--~~~~~~----~~~~~~~~~~~~~~~-------~~~~l~i~~~~ 264 (978)
.|++|+|.|.....+ ...|.|+|.. ....-. .........+.|+.+ ...+|.|.++
T Consensus 1 ~G~~V~LpC~~~~~~~~~~~~~~~~~~~i~W~k~~~~~~~~v~~~~~~~~~~~~~f~gR~~~~~~~~~~~~asL~I~~l- 79 (110)
T cd05878 1 LSSSVLLPCYFTLPPALPPPSNAPESPRIKWTKLSGQKEVTVLVAQDGVVKVGQEYQGRVSLPNYPENRGDASLEISRL- 79 (110)
T ss_pred CCCCEEEeeEeeCCccccccccCCCCCEEEEEEecCCCcEEEEEEECCEEEecccccCeEEeccCCCCCCcEEEEECCC-
Confidence 378899999987544 2579999963 211100 011112223345554 2347999997
Q ss_pred CCCCCeEEEEEEEeCceeEEeEEEEEEEe
Q psy12060 265 QVEDRGSYHCKASNKFGSIISESVQLAFG 293 (978)
Q Consensus 265 ~~~d~G~Y~C~a~n~~g~~~s~~~~l~v~ 293 (978)
+.+|+|.|.|.+...... ....++|.|.
T Consensus 80 ~~sD~G~Y~C~v~~~~~~-~~~~v~l~V~ 107 (110)
T cd05878 80 RSSDSGVYRCEVMHGIED-EQDTVPLEVT 107 (110)
T ss_pred ChhhCEEEEEEEEeCCCc-ceEEEEEEEE
Confidence 999999999999875432 2356666654
No 297
>cd05711 Ig_FcalphaRI Immunoglobulin (IG)-like domain of of FcalphaRI. IG_FcalphaRI : immunoglobulin (IG)-like domain of of FcalphaRI. FcalphaRI (CD89) is an IgA-specific receptor that is expressed on monocytes, eosinophils, neutrophils and macrophages. FcalphaRI mediates IgA-induced immune effector responses such as phagocytosis, antibody-dependent cell-mediated cytotoxicity and respiratory burst. Both monomeric and dimeric IgA can bind to FcalphaRI, and monomeric or dimeric IgA immune complexes can activate phagocytosis and other immune responses through the clustering of FcalphaRI. The Fc RI ectodomain is comprised of two Ig-like domains oriented at about 90 degree to each another.
Probab=98.02 E-value=2e-05 Score=65.54 Aligned_cols=62 Identities=19% Similarity=0.307 Sum_probs=46.5
Q ss_pred CCCCCCcEEEEEEEeecCCCeeEEEEcCccCCCCc----eeeecccEEEeCCCCCCCCeEEEEEEEe
Q psy12060 410 APKAGDKVRLECVAFGYPVPSYNWTRRGSPLPRNA----YFENFNRILTIPNVKVEDQGEYICRASN 472 (978)
Q Consensus 410 ~v~~G~~~~l~C~~~g~p~~~v~W~~~~~~l~~~~----~~~~~~~~L~i~~~~~~d~G~Y~C~a~n 472 (978)
.|.+|++|+|.|.... +...+.|+|+|....... ........|.|.+++.+|+|.|+|....
T Consensus 11 vV~~G~~VTL~C~~~~-~~~~f~l~k~g~~~~~~~~~~~~~~~~~a~f~I~~~~~~~~G~Y~C~~~~ 76 (94)
T cd05711 11 VVPSGENVTLQCHSDI-RFDRFILYKEGRSKPVLHLYEKHHGGFQASFPLGPVTPAHAGTYRCYGSY 76 (94)
T ss_pred ccCCCCeEEEEEecCC-CCCEEEEEECCCCCCceecccccCCeEEEEEEecCCCcccCEEEEEEEEC
Confidence 5679999999998754 445899999987643211 1122345789999999999999999864
No 298
>cd04983 IgV_TCR_alpha_like Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) alpha chain and similar proteins. IgV_TCR_alpha: immunoglobulin (Ig) variable domain of the alpha chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group represents the variable domain of the alpha chain of TCRs and also includes the variable domain of delta chains of TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide.
Probab=98.01 E-value=5e-05 Score=65.90 Aligned_cols=73 Identities=19% Similarity=0.258 Sum_probs=48.0
Q ss_pred cccCcEEEEEEeecCCCCeEEEEEcccc--ccccccccc--CCCCCCceEee------cceEEEeCCCCCCCCeEEEEEE
Q psy12060 207 SILNDITLSCYAGGYPNPSYEWFKEDYV--QDRLVANLI--DPLSDKRFTLS------GGNLIINDPRQVEDRGSYHCKA 276 (978)
Q Consensus 207 ~~g~~~~l~C~~~g~p~~~v~W~~~~~~--~~~~~~~~~--~~~~~~~~~~~------~~~l~i~~~~~~~d~G~Y~C~a 276 (978)
.+|++|+|.|.+.+.+...+.|||.... ...+..... ......|+.+. .-+|.|.++ +.+|+|.|.|.+
T Consensus 11 ~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~~-~~~DsG~Y~C~~ 89 (109)
T cd04983 11 QEGENVTLNCNYSTSTFYYLFWYRQYPGQGPQFLIYISSNGEEKEKGRFSATLDKSRKSSSLHISAA-QLSDSAVYFCAL 89 (109)
T ss_pred cCCCCEEEEEEECCCCccEEEEEEECCCCCeEEEEEEecCCCcccCCcEEEEEcccCCEEEEEECCC-CHHHCEEEEEEE
Confidence 3477799999999878889999996421 110011100 01123454432 237899998 999999999999
Q ss_pred EeCc
Q psy12060 277 SNKF 280 (978)
Q Consensus 277 ~n~~ 280 (978)
.+..
T Consensus 90 ~~~~ 93 (109)
T cd04983 90 SESG 93 (109)
T ss_pred ecCC
Confidence 8754
No 299
>cd00098 IgC Immunoglobulin Constant domain. IgC: Immunoglobulin constant domain (IgC). Members of the IgC family are components of immunoglobulin, T-cell receptors, CD1 cell surface glycoproteins, secretory glycoproteins A/C, and Major Histocompatibility Complex (MHC) class I/II molecules. In immunoglobulins, each chain is composed of one variable domain (IgV) and one or more IgC domains. These names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. The IgV domain is responsible for antigen binding, and the IgC domain is involved in oligomerization and molecular interactions.
Probab=97.98 E-value=1.6e-05 Score=67.01 Aligned_cols=71 Identities=21% Similarity=0.400 Sum_probs=45.6
Q ss_pred cCcEEEEEEeecC-CC-CeEEEEEcccccccccc-cccCCCCCCceEeecceEEEeCCCCCCCCeEEEEEEEeCce
Q psy12060 209 LNDITLSCYAGGY-PN-PSYEWFKEDYVQDRLVA-NLIDPLSDKRFTLSGGNLIINDPRQVEDRGSYHCKASNKFG 281 (978)
Q Consensus 209 g~~~~l~C~~~g~-p~-~~v~W~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~i~~~~~~~d~G~Y~C~a~n~~g 281 (978)
|+.++|.|.+.|. |. ++|+|++||.++..... .......+..+.. ...|.|... ..+|.|.|+|+|.+...
T Consensus 13 ~~~~~L~C~a~g~~P~~~~i~W~~~g~~~~~~~~~~~~~~~~~gt~~~-~s~l~v~~~-~~~~~~~y~C~v~h~~~ 86 (95)
T cd00098 13 GGSVTLTCLATGFYPPDITVTWLKNGKELTSGVTTTPPVPNSDGTYSV-SSQLTVSPS-DWNSGDTYTCVVTHESL 86 (95)
T ss_pred CCCeEEEEEEeeEECCCcEEEEEECCEECCCceeccccccCCCCCEEE-EEEEEECHH-HhCCCCCEEEEEEeCCC
Confidence 5679999999986 64 69999999987643322 1111222222222 234555443 45699999999998754
No 300
>cd05761 Ig2_Necl-1-4_like Second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-4 (also known as cell adhesion molecules CADM3, CADM1, CADM2, and CADM4, respectively). Ig2_Necl-1-4_like: domain similar to the second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), Necl-3 (CADM2) and Necl-4 (CADM4). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cel
Probab=97.98 E-value=1.4e-05 Score=64.59 Aligned_cols=64 Identities=13% Similarity=0.130 Sum_probs=41.5
Q ss_pred eEEEeCCCCCCCCceEEEecccccccccccceEEEeeCCc------EEEeeeeeecceeeEEEEEeecccc
Q psy12060 313 KAMFCDPPTNYPGVNYYWARDYFPNFVEEDKRVFVSYDGA------LYFSALEQIDAGNYSCNVQSKVSDT 377 (978)
Q Consensus 313 ~~l~C~~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~------L~i~~~~~~d~G~Y~C~~~n~~~~~ 377 (978)
+.|.|.+.++.|++.|+|+|++.++.... .......+++ |.+.....+|.+.|+|+|.|.....
T Consensus 2 ~~L~C~~~~~~P~~~v~W~~~~~~l~~~~-~~~~~~~~~~~~~~s~l~~~~~~~d~g~~~~C~v~h~~l~~ 71 (82)
T cd05761 2 VELTCTSSGSKPAATIRWFKGDKELKGVK-LKEEDENGKTFTVTSSLRFQVDREDDGAPIICRVDHPALKS 71 (82)
T ss_pred EEEEEEecCcCcCCeEEEEECCEEccCce-eeEecCCCCEEEEEEEEEEEcchhhCCCEEEEEEeChhcCC
Confidence 57999998888999999999997753211 1111112232 3333333445679999999986543
No 301
>cd07694 Ig2_CD4 Second immunoglobulin (Ig) domain of CD4. Ig2_CD4; second immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy.
Probab=97.98 E-value=5.5e-05 Score=59.31 Aligned_cols=75 Identities=16% Similarity=0.264 Sum_probs=53.6
Q ss_pred CCCCCCcEEEEEEEee--cCCCeeEEEEcCccCCCCceeeecccEEEeCCCCCCCCeEEEEEEEeCCCceEEEEEEEEE
Q psy12060 410 APKAGDKVRLECVAFG--YPVPSYNWTRRGSPLPRNAYFENFNRILTIPNVKVEDQGEYICRASNDRSALESSVTISIQ 486 (978)
Q Consensus 410 ~v~~G~~~~l~C~~~g--~p~~~v~W~~~~~~l~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~ 486 (978)
.+..|++++|+|.... .|.+.|+|+..+...-.. ......+|.+..+...|+|.++|.++...-.....+.+.|.
T Consensus 10 ~lL~G~sLtLtl~~~s~s~p~~~i~w~~P~n~~~~~--~~~~~ktL~~~qv~~qdSG~WtC~V~~~~k~~~~~~~V~Vl 86 (88)
T cd07694 10 HVLSGTNLTLTLHGSSNSLPAFKVEWRGPGNKSKQI--LNQDKKTLNLVQLGPNDSGTWDCIVSVNSSEKTLKLDIKVL 86 (88)
T ss_pred eeecCCcEEEEEecCCCCCCCccEEEeCCCCcccee--ccCCccEEEeceeCcccCCEEEEEEEECceEEEEEeeEEEE
Confidence 4568999999999864 344599999766543211 12346789999999999999999998664444445555543
No 302
>cd05846 Ig1_MRC-OX-2_like First immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200) and similar proteins. Ig1_ MRC-OX-2_like: domain similar to the first immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200). MRC OX-2 is a membrane glycoprotein expressed in a variety of lymphoid and non-lymphoid cells in rats. It has a similar broad distribution pattern in humans. MRC OX-2 may regulate myeloid cell activity. The protein has an extracellular portion containing two Ig-like domains, a transmembrane portion, and a cytoplasmic portion.
Probab=97.97 E-value=5.4e-05 Score=63.71 Aligned_cols=82 Identities=23% Similarity=0.261 Sum_probs=49.6
Q ss_pred cCcEEEEEEeecCCC-CeEEEEEcccccccc-------cccccCCCCCCceEe-----ecceEEEeCCCCCCCCeEEEEE
Q psy12060 209 LNDITLSCYAGGYPN-PSYEWFKEDYVQDRL-------VANLIDPLSDKRFTL-----SGGNLIINDPRQVEDRGSYHCK 275 (978)
Q Consensus 209 g~~~~l~C~~~g~p~-~~v~W~~~~~~~~~~-------~~~~~~~~~~~~~~~-----~~~~l~i~~~~~~~d~G~Y~C~ 275 (978)
|++++|.|....... -.|.|+|........ ....+......|... .+.+|.|.++ +.+|+|.|+|.
T Consensus 1 G~~vtL~C~~~~~~~~~~v~W~k~~~~~~~~i~~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~nv-~~~D~G~Y~C~ 79 (97)
T cd05846 1 GGNVTLSCNLTLPEEVLQVTWQKIQGSSPENIATYSEKYGVKIQPSYFRRRSITSLGLNSTSITIWNV-TLEDEGCYKCI 79 (97)
T ss_pred CCcEEEEEEeCCCCeeEEEEEEEcCCCCceEEEEEcccCCcccCCCccCeEEEcCCCCCccEEEEeCC-ceeeeEEEEEE
Confidence 678999998764433 379999964321100 001111112223222 3458999998 99999999999
Q ss_pred EEeC-ceeEEeEEEEEEE
Q psy12060 276 ASNK-FGSIISESVQLAF 292 (978)
Q Consensus 276 a~n~-~g~~~s~~~~l~v 292 (978)
.... .|+ .+..+.|+|
T Consensus 80 ~~~~p~g~-~~~~~~L~v 96 (97)
T cd05846 80 FNTFPDGS-KSGTMCLTV 96 (97)
T ss_pred EEeCCCCC-eeeEEEEEE
Confidence 8744 444 455666665
No 303
>cd04983 IgV_TCR_alpha_like Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) alpha chain and similar proteins. IgV_TCR_alpha: immunoglobulin (Ig) variable domain of the alpha chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group represents the variable domain of the alpha chain of TCRs and also includes the variable domain of delta chains of TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide.
Probab=97.97 E-value=2.6e-05 Score=67.66 Aligned_cols=66 Identities=20% Similarity=0.299 Sum_probs=48.8
Q ss_pred CCCCCCCcEEEEEEEeecCCCeeEEEEcCcc--C------------CCCceee------ecccEEEeCCCCCCCCeEEEE
Q psy12060 409 EAPKAGDKVRLECVAFGYPVPSYNWTRRGSP--L------------PRNAYFE------NFNRILTIPNVKVEDQGEYIC 468 (978)
Q Consensus 409 ~~v~~G~~~~l~C~~~g~p~~~v~W~~~~~~--l------------~~~~~~~------~~~~~L~i~~~~~~d~G~Y~C 468 (978)
..+.+|++++|.|.+.+.+...+.|+|.... . ....++. .....|.|.+++.+|+|.|.|
T Consensus 8 v~~~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~~~~~DsG~Y~C 87 (109)
T cd04983 8 LSVQEGENVTLNCNYSTSTFYYLFWYRQYPGQGPQFLIYISSNGEEKEKGRFSATLDKSRKSSSLHISAAQLSDSAVYFC 87 (109)
T ss_pred eEEcCCCCEEEEEEECCCCccEEEEEEECCCCCeEEEEEEecCCCcccCCcEEEEEcccCCEEEEEECCCCHHHCEEEEE
Confidence 3567999999999998777779999985421 0 0111111 134579999999999999999
Q ss_pred EEEeCC
Q psy12060 469 RASNDR 474 (978)
Q Consensus 469 ~a~n~~ 474 (978)
.+.+..
T Consensus 88 ~~~~~~ 93 (109)
T cd04983 88 ALSESG 93 (109)
T ss_pred EEecCC
Confidence 998754
No 304
>cd05886 Ig1_Nectin-1_like First immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111) and similar proteins. Ig1_Nectin-1_like: domain similar to the first immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111). Nectin-1 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. In addition nectins heterophilically trans-interact with other CAMs such as nectin-like molecules (Necls), nectin-1 for example, has been shown to trans-interact with Necl-1. Nectins also interact with various other proteins, including the actin filament (F-actin)-binding protein, afadin. Mutation in the human nectin-1 gene is
Probab=97.93 E-value=0.00011 Score=61.15 Aligned_cols=71 Identities=18% Similarity=0.403 Sum_probs=49.6
Q ss_pred cEEEEEEEee-cCCC---eeEEEEcCc--c--C-----------CC--Ccee-----eecccEEEeCCCCCCCCeEEEEE
Q psy12060 416 KVRLECVAFG-YPVP---SYNWTRRGS--P--L-----------PR--NAYF-----ENFNRILTIPNVKVEDQGEYICR 469 (978)
Q Consensus 416 ~~~l~C~~~g-~p~~---~v~W~~~~~--~--l-----------~~--~~~~-----~~~~~~L~i~~~~~~d~G~Y~C~ 469 (978)
+++|.|.... .|.. +|+|.+... . + .. ..+. ...+.+|.|.+++.+|+|.|+|.
T Consensus 2 ~v~L~C~f~~~~~~~~~~~V~W~k~~~~~~~~va~y~~~~g~~~~~~f~~Rv~f~~~~~~daSi~i~nl~~~D~G~Y~C~ 81 (99)
T cd05886 2 DVVLHCSFINPLPPVKITQVTWQKLTNGSKQNVAIYNPSMGVSVLPPYRERVTFKNPSFEDGTISLSRLELEDEGVYICE 81 (99)
T ss_pred cEEEEeEeecCCCCCCeEEEEEEECCCCCceEEEEECCcCCcccCccccCcEEEcCCCCCcceEEEcCCccccCEEEEEE
Confidence 6899999874 2222 699988421 1 1 00 0111 11246899999999999999999
Q ss_pred EEe-CCCceEEEEEEEEE
Q psy12060 470 ASN-DRSALESSVTISIQ 486 (978)
Q Consensus 470 a~n-~~g~~~~~~~l~V~ 486 (978)
+.+ ..|..+..+.|.|.
T Consensus 82 v~t~P~g~~~~~~~L~V~ 99 (99)
T cd05886 82 FATFPTGNRESQLNLTVY 99 (99)
T ss_pred EEeCCCCCeEEEEEEEEC
Confidence 999 67888888888873
No 305
>smart00060 FN3 Fibronectin type 3 domain. One of three types of internal repeat within the plasma protein, fibronectin. The tenth fibronectin type III repeat contains a RGD cell recognition sequence in a flexible loop between 2 strands. Type III modules are present in both extracellular and intracellular proteins.
Probab=97.92 E-value=4.5e-05 Score=62.08 Aligned_cols=78 Identities=23% Similarity=0.378 Sum_probs=52.8
Q ss_pred CCCceeecccccCcEEEEEEeCCCCCCCCCcceEEEEEEecCCc---cceeeeeeeccceeEEEEEcCCCCceeeEEEEE
Q psy12060 888 APSRIGGGGGKIGDLSISWEPLPREKQNAPNIYYKIFWRKKNDT---EFQSETLKEYGNVGIAVVRIPSEFYYTEYEVKV 964 (978)
Q Consensus 888 ~P~~~~~~~~~~~si~v~W~~p~~~~~~g~i~~Y~i~~~~~~~~---~~~~~~~~~~~~~~~~~~~l~~L~p~t~Y~~~V 964 (978)
+|.++.+.....+++.|+|++|+ ..++ .+|.|+|...... .|....... . ...+.+.+|.|++.|.|+|
T Consensus 3 ~p~~~~~~~~~~~~~~v~W~~~~--~~~~--~~y~~~~~~~~~~~~~~~~~~~~~~--~--~~~~~i~~L~~~~~Y~v~v 74 (83)
T smart00060 3 PPSNLRVTDVTSTSVTLSWEPPP--DDGI--TGYIVGYRVEYREEGSSWKEVNVTP--S--STSYTLTGLKPGTEYEFRV 74 (83)
T ss_pred CCCcEEEEEEeCCEEEEEECCCC--CCCC--CccEEEEEEEEecCCCccEEEEecC--C--ccEEEEeCcCCCCEEEEEE
Confidence 34557777667779999999743 2222 7888888765432 233322221 1 2447789999999999999
Q ss_pred EEecCCCCC
Q psy12060 965 QAINDVGPG 973 (978)
Q Consensus 965 ~A~n~~G~g 973 (978)
+|.+..|.+
T Consensus 75 ~a~~~~g~~ 83 (83)
T smart00060 75 RAVNGAGEG 83 (83)
T ss_pred EEEcccCCC
Confidence 999987754
No 306
>cd05755 Ig2_ICAM-1_like Second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins. Ig2_ ICAM-1_like: domain similar to the second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54). During the inflammation process, these molecules recruit leukocytes onto the vascular endothelium before extravasation to the injured tissues. ICAM-1 may be involved in organ targeted tumor metastasis. The interaction of ICAM-1 with leukocyte function-associated antigen-1 (LFA-1) plays a part in leukocyte-endothelial cell recognition. This group also contains ICAM-2, which also interacts with LFA-1. Transmigration of immature dendritic cells across resting endothelium is dependent on the interaction of ICAM-2 with, yet unidentified, ligand(s) on the dendritic cells. ICAM-1 has five Ig-like domains and ICAM-2 has two. ICAM-1 may also act as host receptor for viruses and parasites.
Probab=97.92 E-value=4.1e-05 Score=63.20 Aligned_cols=68 Identities=19% Similarity=0.269 Sum_probs=48.3
Q ss_pred CCCCCCCcEEEEEEEee-cCCCe--eEEEEcCccCCCCcee------eecccEEEeCCCCCCCCeEEEEEEEeCCCc
Q psy12060 409 EAPKAGDKVRLECVAFG-YPVPS--YNWTRRGSPLPRNAYF------ENFNRILTIPNVKVEDQGEYICRASNDRSA 476 (978)
Q Consensus 409 ~~v~~G~~~~l~C~~~g-~p~~~--v~W~~~~~~l~~~~~~------~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~ 476 (978)
..+.+|+.++|.|.+.| .|.++ |+|||++..+...... .....+|.+..-..+|.-.|+|+|.+..+.
T Consensus 11 ~~~~eG~~~tL~C~v~g~~P~a~L~i~W~rG~~~l~~~~~~~~~~~~~~~~stlt~~~~r~D~g~~~sC~A~l~l~~ 87 (100)
T cd05755 11 SWQPVGKNYTLQCDVPGVAPRQNLTVVLLRGNETLSRQPFGDNTKSPVNAPATITITVDREDHGANFSCETELDLRP 87 (100)
T ss_pred CcccCCCcEEEEEEEcCcCCCCcEEEEEeeCCEEcccceeccccCCCceeEEEEEEecchhhCCcEEEEEEEeccCc
Confidence 35679999999999985 77776 7999999998654321 112346777644444444999999987543
No 307
>PHA02987 Ig domain OX-2-like protein; Provisional
Probab=97.91 E-value=5.1e-05 Score=68.76 Aligned_cols=80 Identities=15% Similarity=0.316 Sum_probs=59.0
Q ss_pred CCCCCCcEEEEEEEe-ecCCCeeEEEEcCccCC----------C--Cceeee-----cccEEEeCCCCCCCCeEEEEEEE
Q psy12060 410 APKAGDKVRLECVAF-GYPVPSYNWTRRGSPLP----------R--NAYFEN-----FNRILTIPNVKVEDQGEYICRAS 471 (978)
Q Consensus 410 ~v~~G~~~~l~C~~~-g~p~~~v~W~~~~~~l~----------~--~~~~~~-----~~~~L~i~~~~~~d~G~Y~C~a~ 471 (978)
+|.+|++++|.|... +...++++|+|..+.+. . ..+... ....|+|.+++.+|+|.|+|...
T Consensus 26 ~V~ege~VtLsCs~t~s~~~~qVtWkK~~~~IatY~~~g~~i~~~Fk~Rve~mS~s~~~StItIknVt~sDeGcY~C~F~ 105 (189)
T PHA02987 26 TVSEHVNVKISCNKTSSFNSILITWKKNNKTIAGYGPCGPVIVDKFKNKIEYLSKSFNESTILIKNVSLKDNGCYTCIFN 105 (189)
T ss_pred EEcCCCCEEEEEecCCCCccceEEEEEcCCCEEEEecCCcEEChhhcCeEEEeccCCCcceEEEEeCChhhCeEEEEEEE
Confidence 457899999999985 55677999999754321 0 112221 35679999999999999999987
Q ss_pred e-CCC-ceEEEEEEEEEeec
Q psy12060 472 N-DRS-ALESSVTISIQAEP 489 (978)
Q Consensus 472 n-~~g-~~~~~~~l~V~~~p 489 (978)
. +.| ..+..+-|.|....
T Consensus 106 tfp~G~~~~gt~CLtVt~~~ 125 (189)
T PHA02987 106 TLLSKNNEKGVVCLNVTTDS 125 (189)
T ss_pred ecCCCCCceeEEEEEEEchh
Confidence 5 456 67788888887543
No 308
>cd05879 Ig_P0 Immunoglobulin (Ig)-like domain of Protein zero (P0). Ig_P0ex: immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin.
Probab=97.90 E-value=0.00011 Score=63.36 Aligned_cols=72 Identities=22% Similarity=0.462 Sum_probs=50.1
Q ss_pred cceeecCCCeEEEEEeeccCC----CCeeEEe---------------eCCEEecCC-----CcEEEe-----ecCcEEEc
Q psy12060 596 SETYAGEGGNVTIFCNPEAAP----KPKFVWK---------------KDGNIIGSG-----GRRKIF-----ENGNLLIS 646 (978)
Q Consensus 596 ~~~~~~~g~~~~l~C~~~~~p----~~~i~W~---------------~~g~~~~~~-----~~~~~~-----~~~~l~i~ 646 (978)
.++.+..|+.++|.|...... ...|.|. ++|...... .|..+. .+.+|.|.
T Consensus 6 ~ev~a~~G~~v~L~C~f~~~~~~~~~~~v~W~~~~~~~~~~~~v~~y~~g~~~~~~~~~f~~Rv~f~g~~~~~daSI~I~ 85 (116)
T cd05879 6 REVYGTVGSDVTLSCSFWSSEWISDDISFTWHYQPDGSRDAISIFHYGKGQPYIDDVGPFKERIEWVGNPSRKDGSIVIH 85 (116)
T ss_pred ceEEEEcCCcEEEEEEEecCCCCCCcEEEEEEEcCCCCCccEEEEEeCCCceecccccCccCceEEeCCCCcCeeEEEEc
Confidence 455688999999999986643 3489993 234333211 244332 33469999
Q ss_pred cccCCCCEEEEEEEEeCCcee
Q psy12060 647 PVSRDDSGIYSCTATNVHGMD 667 (978)
Q Consensus 647 ~~~~~d~G~Y~C~a~n~~g~~ 667 (978)
+++.+|.|.|+|.+.|.-+..
T Consensus 86 nv~~sD~G~Y~C~v~n~p~~~ 106 (116)
T cd05879 86 NLDYTDNGTFTCDVKNPPDIV 106 (116)
T ss_pred cCCcccCEEEEEEEEcCCCcC
Confidence 999999999999999876543
No 309
>cd05755 Ig2_ICAM-1_like Second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins. Ig2_ ICAM-1_like: domain similar to the second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54). During the inflammation process, these molecules recruit leukocytes onto the vascular endothelium before extravasation to the injured tissues. ICAM-1 may be involved in organ targeted tumor metastasis. The interaction of ICAM-1 with leukocyte function-associated antigen-1 (LFA-1) plays a part in leukocyte-endothelial cell recognition. This group also contains ICAM-2, which also interacts with LFA-1. Transmigration of immature dendritic cells across resting endothelium is dependent on the interaction of ICAM-2 with, yet unidentified, ligand(s) on the dendritic cells. ICAM-1 has five Ig-like domains and ICAM-2 has two. ICAM-1 may also act as host receptor for viruses and parasites.
Probab=97.89 E-value=7.5e-05 Score=61.66 Aligned_cols=71 Identities=11% Similarity=0.151 Sum_probs=45.8
Q ss_pred cccCcEEEEEEee-cCCCCe--EEEEEcccccccccccccCCCCCCceEeecceEEEeCCCCCCCCeEEEEEEEeCcee
Q psy12060 207 SILNDITLSCYAG-GYPNPS--YEWFKEDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVEDRGSYHCKASNKFGS 282 (978)
Q Consensus 207 ~~g~~~~l~C~~~-g~p~~~--v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~d~G~Y~C~a~n~~g~ 282 (978)
.+|+.++|+|.+. +.|.+. |+|||++.++....... . .........+|.+... +.||...|+|+|.+..+.
T Consensus 14 ~eG~~~tL~C~v~g~~P~a~L~i~W~rG~~~l~~~~~~~--~--~~~~~~~~stlt~~~~-r~D~g~~~sC~A~l~l~~ 87 (100)
T cd05755 14 PVGKNYTLQCDVPGVAPRQNLTVVLLRGNETLSRQPFGD--N--TKSPVNAPATITITVD-REDHGANFSCETELDLRP 87 (100)
T ss_pred cCCCcEEEEEEEcCcCCCCcEEEEEeeCCEEcccceecc--c--cCCCceeEEEEEEecc-hhhCCcEEEEEEEeccCc
Confidence 4578899999996 588876 79999998774321110 0 0111122345666553 566666999999987654
No 310
>cd05887 Ig1_Nectin-3_like First immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3) and similar proteins. Ig1_Nectin-3_like: domain similar to the first immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3). Nectin-3 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example, during spermatid development, the nectin-3,-2 trans-interaction is required for the formation of Sertoli cell-spermatid junctions in testis, and during morphogenesis of the ciliary body, the nectin-3,-1 trans-interaction is important for apex-apex adhesion between the pigment and non-pigment layers of the ciliary epithelia. Nectins also
Probab=97.89 E-value=0.00012 Score=60.38 Aligned_cols=71 Identities=23% Similarity=0.412 Sum_probs=49.9
Q ss_pred CcEEEEEEEeec-CCCeeEEEEcCc----cCC-----CC--------cee-----eecccEEEeCCCCCCCCeEEEEEEE
Q psy12060 415 DKVRLECVAFGY-PVPSYNWTRRGS----PLP-----RN--------AYF-----ENFNRILTIPNVKVEDQGEYICRAS 471 (978)
Q Consensus 415 ~~~~l~C~~~g~-p~~~v~W~~~~~----~l~-----~~--------~~~-----~~~~~~L~i~~~~~~d~G~Y~C~a~ 471 (978)
++++|.|..... ...+|+|.|... .+. .+ .+. ...+.+|.|.+++.+|+|.|+|.+.
T Consensus 1 ~~vtL~C~~~~~~~~~qV~W~k~~~~~~~~ia~y~~~~g~~~~~~y~~Rv~~~~~~~~d~sl~i~nv~~~D~G~Y~C~v~ 80 (96)
T cd05887 1 KNVTLKCRIQVNETITQSSWEKIHGKGSVTLAVHHPMYGISIQPDYQGRVSFKNYSLLDATIMLENVGFSDIGVYICKAV 80 (96)
T ss_pred CCEEEEEEecCCCcEEEEEEEEcCCCCcEEEEEEcccCCcccChhhCCcEEEcCCCCCccEEEEeCCCccccEEEEEEEE
Confidence 468999998642 233899988432 110 00 111 1235689999999999999999975
Q ss_pred e-CCCceEEEEEEEE
Q psy12060 472 N-DRSALESSVTISI 485 (978)
Q Consensus 472 n-~~g~~~~~~~l~V 485 (978)
+ +.|+.++++.|.|
T Consensus 81 tfP~G~~~~~~~l~~ 95 (96)
T cd05887 81 TFPLGNTQSSTTVTV 95 (96)
T ss_pred eCCCCCeeEEEEEEE
Confidence 4 6889999988887
No 311
>cd05901 Ig_Versican Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican. Ig_Versican: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Like aggrecan, versican has a wide distribution in connective tissue and extracellular matrices. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA
Probab=97.88 E-value=0.00016 Score=61.57 Aligned_cols=39 Identities=21% Similarity=0.405 Sum_probs=34.2
Q ss_pred cccEEEeCCCCCCCCeEEEEEEEeCCCceEEEEEEEEEe
Q psy12060 449 FNRILTIPNVKVEDQGEYICRASNDRSALESSVTISIQA 487 (978)
Q Consensus 449 ~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~ 487 (978)
.+.+|.|.+++.+|+|.|+|.+.+.....+..+.|.|..
T Consensus 77 g~asL~i~~v~~sD~G~Y~C~V~~g~~~~~~~v~L~V~G 115 (117)
T cd05901 77 GDASLTIVKLRASDAGVYRCEVMHGIEDTQDTVSLDVSG 115 (117)
T ss_pred CceEEEEcccccccCEEEEEEEEECCcccEEEEEEEEEE
Confidence 356899999999999999999999888888888888763
No 312
>cd05884 Ig2_Necl-3 Second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Ig2_Necl-3: second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-3 has been shown to accumulate in tissues of the central and peripheral nervous system, where it is expressed in ependymal cells and myelinated axons. It is observed at the interface between the axon shaft and the myelin sheath. Ig domains are likely to participate in ligand binding and recognition.
Probab=97.88 E-value=3e-05 Score=62.40 Aligned_cols=65 Identities=12% Similarity=0.117 Sum_probs=42.1
Q ss_pred eEEEeCCCCCCCCceEEEecccccccccccceEEEeeCC------cEEEeeeeeecceeeEEEEEeecccc
Q psy12060 313 KAMFCDPPTNYPGVNYYWARDYFPNFVEEDKRVFVSYDG------ALYFSALEQIDAGNYSCNVQSKVSDT 377 (978)
Q Consensus 313 ~~l~C~~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~------~L~i~~~~~~d~G~Y~C~~~n~~~~~ 377 (978)
++|.|.+.+++|++.|+|+|+|.++.-..........++ .|.|..-...|...|+|+|.+.....
T Consensus 2 ~~LtC~a~gf~P~~~itW~kng~~l~~~~~~~~~~~~~~t~~~~s~L~~~~~~~d~g~~ytC~v~h~~l~~ 72 (83)
T cd05884 2 MQLTCKTSGSKPAADIRWFKNDKEIKDVKYLKEEDANRKTFTVSSTLDFRVDRSDDGVAIICRVDHESLNA 72 (83)
T ss_pred EEEEEEeCCccCCCEEEEEECCEECcCceeeEeeCCCCCEEEEEEEEEEEcccccCCCEEEEEEechhcCC
Confidence 579999988899999999999987432111111111222 34454444555679999999876543
No 313
>cd05899 IgV_TCR_beta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) bet a chain. IgV_TCR_beta: immunoglobulin (Ig) variable domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the alpha chain of alpha/beta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide.
Probab=97.87 E-value=5.6e-05 Score=65.50 Aligned_cols=65 Identities=25% Similarity=0.362 Sum_probs=47.5
Q ss_pred CCCCCCCcEEEEEEEeecCCCeeEEEEcCc--cCC--------------C--Cceee-----ecccEEEeCCCCCCCCeE
Q psy12060 409 EAPKAGDKVRLECVAFGYPVPSYNWTRRGS--PLP--------------R--NAYFE-----NFNRILTIPNVKVEDQGE 465 (978)
Q Consensus 409 ~~v~~G~~~~l~C~~~g~p~~~v~W~~~~~--~l~--------------~--~~~~~-----~~~~~L~i~~~~~~d~G~ 465 (978)
..+.+|++++|.|.+.+ +.+.+.|||... .+. . ..++. .....|.|.+++.+|+|.
T Consensus 8 ~~v~~G~~v~l~C~~~~-~~~~v~Wykq~~g~~~~~l~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~~~~~Dsg~ 86 (110)
T cd05899 8 LIKGRGQSVTLRCSQTS-GHDNMYWYRQDPGKGLQLLFYSNGGSLNEEEGDPKDRFSASRPSLTRSSLTIKSAEPEDSAV 86 (110)
T ss_pred eEEcCCCcEEEEEEECC-CCCEEEEEEECCCCCcEEEEEEcCCCceEecCccCCceEEECcCCCccEEEECCCChhhCEE
Confidence 35679999999999987 667899999642 110 0 11111 123579999999999999
Q ss_pred EEEEEEeCC
Q psy12060 466 YICRASNDR 474 (978)
Q Consensus 466 Y~C~a~n~~ 474 (978)
|.|.+.+..
T Consensus 87 Y~Ca~~~~~ 95 (110)
T cd05899 87 YLCASSLGG 95 (110)
T ss_pred EEEEeeCCC
Confidence 999998653
No 314
>cd05887 Ig1_Nectin-3_like First immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3) and similar proteins. Ig1_Nectin-3_like: domain similar to the first immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3). Nectin-3 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example, during spermatid development, the nectin-3,-2 trans-interaction is required for the formation of Sertoli cell-spermatid junctions in testis, and during morphogenesis of the ciliary body, the nectin-3,-1 trans-interaction is important for apex-apex adhesion between the pigment and non-pigment layers of the ciliary epithelia. Nectins also
Probab=97.87 E-value=0.00014 Score=60.02 Aligned_cols=80 Identities=21% Similarity=0.333 Sum_probs=49.8
Q ss_pred cEEEEEEeecCC-CCeEEEEEccccc-cccc------ccccCCCCCCceEee-----cceEEEeCCCCCCCCeEEEEEEE
Q psy12060 211 DITLSCYAGGYP-NPSYEWFKEDYVQ-DRLV------ANLIDPLSDKRFTLS-----GGNLIINDPRQVEDRGSYHCKAS 277 (978)
Q Consensus 211 ~~~l~C~~~g~p-~~~v~W~~~~~~~-~~~~------~~~~~~~~~~~~~~~-----~~~l~i~~~~~~~d~G~Y~C~a~ 277 (978)
+++|.|.....+ ..+|+|.|..... ..+- ...+.+....|.... +.+|.|.++ +.+|+|.|+|.+.
T Consensus 2 ~vtL~C~~~~~~~~~qV~W~k~~~~~~~~ia~y~~~~g~~~~~~y~~Rv~~~~~~~~d~sl~i~nv-~~~D~G~Y~C~v~ 80 (96)
T cd05887 2 NVTLKCRIQVNETITQSSWEKIHGKGSVTLAVHHPMYGISIQPDYQGRVSFKNYSLLDATIMLENV-GFSDIGVYICKAV 80 (96)
T ss_pred CEEEEEEecCCCcEEEEEEEEcCCCCcEEEEEEcccCCcccChhhCCcEEEcCCCCCccEEEEeCC-CccccEEEEEEEE
Confidence 589999986433 3489999853211 1000 111222233455443 679999998 8999999999986
Q ss_pred e-CceeEEeEEEEEEE
Q psy12060 278 N-KFGSIISESVQLAF 292 (978)
Q Consensus 278 n-~~g~~~s~~~~l~v 292 (978)
+ +.|+. +.++.|+|
T Consensus 81 tfP~G~~-~~~~~l~~ 95 (96)
T cd05887 81 TFPLGNT-QSSTTVTV 95 (96)
T ss_pred eCCCCCe-eEEEEEEE
Confidence 4 55653 45566654
No 315
>cd05902 Ig_Neurocan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan. Ig_Neurocan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Unlike aggrecan which is widely distributed in connective tissue and extracellular matrices, neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many differen
Probab=97.87 E-value=7.8e-05 Score=63.41 Aligned_cols=74 Identities=22% Similarity=0.418 Sum_probs=52.1
Q ss_pred CCcEEEEEEEeecC-------CCeeEEEEcC-----ccC----CCC----------ceee-------ecccEEEeCCCCC
Q psy12060 414 GDKVRLECVAFGYP-------VPSYNWTRRG-----SPL----PRN----------AYFE-------NFNRILTIPNVKV 460 (978)
Q Consensus 414 G~~~~l~C~~~g~p-------~~~v~W~~~~-----~~l----~~~----------~~~~-------~~~~~L~i~~~~~ 460 (978)
|++++|.|...-.| .+.|.|.|.. ..+ ..+ .+.. ..+.+|.|.+++.
T Consensus 2 ~~~v~LpC~~~~~p~~~~~~~~~~I~W~k~~~~~~~~~~~v~v~~~~~~~~~~~y~gRvsl~~~~~~~~~asL~i~nv~~ 81 (110)
T cd05902 2 SSSVLLPCVFTLPPSASSPPEGPRIKWTKLRPASGQKQRPVLVARDNVVRVAKAFQGRVSLPGYPKNRYNASLVLSRLRY 81 (110)
T ss_pred CCcEEEeeEEEcCccccCCCCCCEEEEEEeCCCCCceEEEEEECCCCcEEEchhcccEEEeecCCCCCceEEEEECCCCH
Confidence 78999999976322 3589999851 111 000 0111 1346899999999
Q ss_pred CCCeEEEEEEEeCCCceEEEEEEEEEe
Q psy12060 461 EDQGEYICRASNDRSALESSVTISIQA 487 (978)
Q Consensus 461 ~d~G~Y~C~a~n~~g~~~~~~~l~V~~ 487 (978)
+|+|.|.|.+.......+..+.|.|..
T Consensus 82 ~D~G~Y~C~v~~g~~~~~~~v~L~V~g 108 (110)
T cd05902 82 SDSGTYRCEVVLGINDEQDTVPLEVTG 108 (110)
T ss_pred HHCEEEEEEEEECCcccEEEEEEEEEE
Confidence 999999999999776677888888763
No 316
>cd05879 Ig_P0 Immunoglobulin (Ig)-like domain of Protein zero (P0). Ig_P0ex: immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin.
Probab=97.85 E-value=0.00011 Score=63.47 Aligned_cols=75 Identities=19% Similarity=0.358 Sum_probs=49.7
Q ss_pred CcccccCCCceeEEEEeecC----CCCeeEEeE---------------CCEECCCCCCCCCCCCcEEE------ecCEEE
Q psy12060 496 TDKHMDNQADLTWTCEAFGV----PDVTYSWFR---------------NGELLNSETLPLEDQDRYFI------QDNVLT 550 (978)
Q Consensus 496 ~~~~~~~g~~~~l~C~~~~~----p~~~i~W~~---------------~g~~~~~~~~~~~~~~~~~~------~~~~l~ 550 (978)
....+..|++++|.|..... +...|.|.+ +|...... ...-.+|... .+.+|.
T Consensus 6 ~ev~a~~G~~v~L~C~f~~~~~~~~~~~v~W~~~~~~~~~~~~v~~y~~g~~~~~~--~~~f~~Rv~f~g~~~~~daSI~ 83 (116)
T cd05879 6 REVYGTVGSDVTLSCSFWSSEWISDDISFTWHYQPDGSRDAISIFHYGKGQPYIDD--VGPFKERIEWVGNPSRKDGSIV 83 (116)
T ss_pred ceEEEEcCCcEEEEEEEecCCCCCCcEEEEEEEcCCCCCccEEEEEeCCCceeccc--ccCccCceEEeCCCCcCeeEEE
Confidence 34567899999999998753 356899943 22221100 0112234432 344899
Q ss_pred EEeCCCCCCCeEEEEEEEcCCCc
Q psy12060 551 IRYLNPERDPAMYQCRAKNQLKT 573 (978)
Q Consensus 551 i~~~~~~~d~G~Y~C~a~n~~g~ 573 (978)
|.+++. +|.|.|+|.+.|..+.
T Consensus 84 I~nv~~-sD~G~Y~C~v~n~p~~ 105 (116)
T cd05879 84 IHNLDY-TDNGTFTCDVKNPPDI 105 (116)
T ss_pred EccCCc-ccCEEEEEEEEcCCCc
Confidence 999997 9999999999987653
No 317
>cd00099 IgV Immunoglobulin variable domain (IgV). IgV: Immunoglobulin variable domain (IgV). Members of the IgV family are components of immunoglobulin (Ig) and T cell receptors. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. Within the variable domain, there are regions of even more variability called the hypervariable or complementarity-determining regions (CDRs) which are responsible for antigen binding. A predominant feature of most Ig domains is the disulfide bridge connecting 2 beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=97.85 E-value=4.9e-05 Score=65.48 Aligned_cols=65 Identities=25% Similarity=0.343 Sum_probs=47.4
Q ss_pred CCCCCcEEEEEEEeec-CCCeeEEEEcCcc--C---------------CCCceee----e--cccEEEeCCCCCCCCeEE
Q psy12060 411 PKAGDKVRLECVAFGY-PVPSYNWTRRGSP--L---------------PRNAYFE----N--FNRILTIPNVKVEDQGEY 466 (978)
Q Consensus 411 v~~G~~~~l~C~~~g~-p~~~v~W~~~~~~--l---------------~~~~~~~----~--~~~~L~i~~~~~~d~G~Y 466 (978)
+.+|++++|.|.+.+. +...+.|+|.... . ....+.. . ...+|.|.+++.+|+|.|
T Consensus 3 v~~G~~v~L~C~~~~~~~~~~v~W~k~~~~~~~~~i~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~I~~v~~~D~G~Y 82 (105)
T cd00099 3 VSEGESVTLSCTYSGSFSSYYIFWYRQKPGKGPELLIYISSNGSQYAGGVKGRFSGTRDSSKSSFTLTISSLQPEDSAVY 82 (105)
T ss_pred ecCCCCEEEEEEEeCCcCcceEEEEEECCCCCCEEEEEEeCCCCccCccCCCcEEEEEeccCCEEEEEECCCCHHHCEEE
Confidence 4689999999999875 6668999995431 0 0011111 1 245799999999999999
Q ss_pred EEEEEeCCC
Q psy12060 467 ICRASNDRS 475 (978)
Q Consensus 467 ~C~a~n~~g 475 (978)
.|.+.+..+
T Consensus 83 ~C~v~~~~~ 91 (105)
T cd00099 83 YCAVSLSGG 91 (105)
T ss_pred EEEEecCCC
Confidence 999997654
No 318
>cd04980 IgV_L_kappa Immunoglobulin (Ig) light chain, kappa type, variable (V) domain. IgV_L_kappa: Immunoglobulin (Ig) light chain, kappa type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.
Probab=97.84 E-value=0.00012 Score=62.99 Aligned_cols=72 Identities=22% Similarity=0.313 Sum_probs=44.8
Q ss_pred cccCcEEEEEEeecCC-CCeEEEEEccc--ccccccccc--cCCCCCCceEee----cceEEEeCCCCCCCCeEEEEEEE
Q psy12060 207 SILNDITLSCYAGGYP-NPSYEWFKEDY--VQDRLVANL--IDPLSDKRFTLS----GGNLIINDPRQVEDRGSYHCKAS 277 (978)
Q Consensus 207 ~~g~~~~l~C~~~g~p-~~~v~W~~~~~--~~~~~~~~~--~~~~~~~~~~~~----~~~l~i~~~~~~~d~G~Y~C~a~ 277 (978)
++|++|+|+|.+.+.. ...+.|||... ....+.... .......++... ...|.|.++ +.+|+|.|.|.+.
T Consensus 13 ~~G~~v~L~C~~~~~~~~~~~~Wyrq~~g~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~~-~~~Dsg~Y~Ca~~ 91 (106)
T cd04980 13 SPGESATISCKASQSVSSNYLAWYQQKPGQAPKLLIYGASTLASGTPSRFSGSGSGTDFTLTISRV-EPEDAAVYYCQQY 91 (106)
T ss_pred CCCCCEEEEEEECCCCCCCcEEEEEECCCCCcEEEEECccccCCCCCCCEEEeccCCEEEEEECCC-ChHHCEEEEEEEe
Confidence 3567799999997665 56899998642 111111000 001112344432 236889897 8999999999987
Q ss_pred eC
Q psy12060 278 NK 279 (978)
Q Consensus 278 n~ 279 (978)
+.
T Consensus 92 ~~ 93 (106)
T cd04980 92 GT 93 (106)
T ss_pred CC
Confidence 54
No 319
>cd05899 IgV_TCR_beta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) bet a chain. IgV_TCR_beta: immunoglobulin (Ig) variable domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the alpha chain of alpha/beta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide.
Probab=97.84 E-value=9.8e-05 Score=63.98 Aligned_cols=72 Identities=21% Similarity=0.336 Sum_probs=46.1
Q ss_pred cccCcEEEEEEeecCCCCeEEEEEccc--cccccccc---cc--C-CCCCCceEe-----ecceEEEeCCCCCCCCeEEE
Q psy12060 207 SILNDITLSCYAGGYPNPSYEWFKEDY--VQDRLVAN---LI--D-PLSDKRFTL-----SGGNLIINDPRQVEDRGSYH 273 (978)
Q Consensus 207 ~~g~~~~l~C~~~g~p~~~v~W~~~~~--~~~~~~~~---~~--~-~~~~~~~~~-----~~~~l~i~~~~~~~d~G~Y~ 273 (978)
++|++++|.|.+.+ +.+.+.|||... ...-+... .. . ...+.++.. ...+|.|.++ +.+|+|.|.
T Consensus 11 ~~G~~v~l~C~~~~-~~~~v~Wykq~~g~~~~~l~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~~-~~~Dsg~Y~ 88 (110)
T cd05899 11 GRGQSVTLRCSQTS-GHDNMYWYRQDPGKGLQLLFYSNGGSLNEEEGDPKDRFSASRPSLTRSSLTIKSA-EPEDSAVYL 88 (110)
T ss_pred cCCCcEEEEEEECC-CCCEEEEEEECCCCCcEEEEEEcCCCceEecCccCCceEEECcCCCccEEEECCC-ChhhCEEEE
Confidence 34677999999987 778999999752 11111100 00 0 111234432 1247999997 899999999
Q ss_pred EEEEeCc
Q psy12060 274 CKASNKF 280 (978)
Q Consensus 274 C~a~n~~ 280 (978)
|.+.+..
T Consensus 89 Ca~~~~~ 95 (110)
T cd05899 89 CASSLGG 95 (110)
T ss_pred EEeeCCC
Confidence 9998753
No 320
>cd00099 IgV Immunoglobulin variable domain (IgV). IgV: Immunoglobulin variable domain (IgV). Members of the IgV family are components of immunoglobulin (Ig) and T cell receptors. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. Within the variable domain, there are regions of even more variability called the hypervariable or complementarity-determining regions (CDRs) which are responsible for antigen binding. A predominant feature of most Ig domains is the disulfide bridge connecting 2 beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=97.84 E-value=7.6e-05 Score=64.30 Aligned_cols=74 Identities=26% Similarity=0.274 Sum_probs=48.5
Q ss_pred cccCcEEEEEEeecC-CCCeEEEEEcccc--cccccccc-----cCCCCCCceEee------cceEEEeCCCCCCCCeEE
Q psy12060 207 SILNDITLSCYAGGY-PNPSYEWFKEDYV--QDRLVANL-----IDPLSDKRFTLS------GGNLIINDPRQVEDRGSY 272 (978)
Q Consensus 207 ~~g~~~~l~C~~~g~-p~~~v~W~~~~~~--~~~~~~~~-----~~~~~~~~~~~~------~~~l~i~~~~~~~d~G~Y 272 (978)
.+|++++|.|.+.+. +...+.|||.... ...+.... ..+....|+.+. .-+|.|.++ +.+|+|.|
T Consensus 4 ~~G~~v~L~C~~~~~~~~~~v~W~k~~~~~~~~~i~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~I~~v-~~~D~G~Y 82 (105)
T cd00099 4 SEGESVTLSCTYSGSFSSYYIFWYRQKPGKGPELLIYISSNGSQYAGGVKGRFSGTRDSSKSSFTLTISSL-QPEDSAVY 82 (105)
T ss_pred cCCCCEEEEEEEeCCcCcceEEEEEECCCCCCEEEEEEeCCCCccCccCCCcEEEEEeccCCEEEEEECCC-CHHHCEEE
Confidence 357889999999876 6679999996531 11110000 012223444432 227899997 89999999
Q ss_pred EEEEEeCce
Q psy12060 273 HCKASNKFG 281 (978)
Q Consensus 273 ~C~a~n~~g 281 (978)
.|.+.+..+
T Consensus 83 ~C~v~~~~~ 91 (105)
T cd00099 83 YCAVSLSGG 91 (105)
T ss_pred EEEEecCCC
Confidence 999998764
No 321
>smart00060 FN3 Fibronectin type 3 domain. One of three types of internal repeat within the plasma protein, fibronectin. The tenth fibronectin type III repeat contains a RGD cell recognition sequence in a flexible loop between 2 strands. Type III modules are present in both extracellular and intracellular proteins.
Probab=97.84 E-value=0.00014 Score=59.00 Aligned_cols=78 Identities=28% Similarity=0.481 Sum_probs=54.6
Q ss_pred CCCCceEEEEeeCCeeEEEeecCCCCCCCceeEEEEEeecccc---CceEecccccceeeeecCCceeeEEeeccCCCce
Q psy12060 779 GLPGGVQVVEVHKTSATIQWTDGATNGRPITHYKIIARTNWNS---TWFNVSEHVIGKEVDRYTGRKEASIENVLVPWST 855 (978)
Q Consensus 779 ~~P~~~~~~~~~~~~v~l~W~~p~~~~~~i~~Y~v~~~~~~~~---~w~~~~~~~~~~~~~~~~~~~~~~~~~~L~p~~~ 855 (978)
.+|.++.+......++.|+|.+|...+. .+|.++|...... .|..... ......+.+.+ |.|++.
T Consensus 2 ~~p~~~~~~~~~~~~~~v~W~~~~~~~~--~~y~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~i~~-L~~~~~ 69 (83)
T smart00060 2 SPPSNLRVTDVTSTSVTLSWEPPPDDGI--TGYIVGYRVEYREEGSSWKEVNV---------TPSSTSYTLTG-LKPGTE 69 (83)
T ss_pred CCCCcEEEEEEeCCEEEEEECCCCCCCC--CccEEEEEEEEecCCCccEEEEe---------cCCccEEEEeC-cCCCCE
Confidence 3455677777777899999998765443 6788877764432 2332211 11246788899 999999
Q ss_pred eEEEEEEecCCcc
Q psy12060 856 YEFKVIAGNELGY 868 (978)
Q Consensus 856 Y~~~v~A~N~~G~ 868 (978)
|.|+|+|.+..|.
T Consensus 70 Y~v~v~a~~~~g~ 82 (83)
T smart00060 70 YEFRVRAVNGAGE 82 (83)
T ss_pred EEEEEEEEcccCC
Confidence 9999999998664
No 322
>KOG1480|consensus
Probab=97.84 E-value=9.7e-06 Score=87.99 Aligned_cols=186 Identities=19% Similarity=0.333 Sum_probs=112.3
Q ss_pred CCeeEeCCCceEecCCCccccCcEEEEEEeecCCCC----eEEEEEcccccccccccccCCCCCC-ceEeecceEEEeCC
Q psy12060 189 GPYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNP----SYEWFKEDYVQDRLVANLIDPLSDK-RFTLSGGNLIINDP 263 (978)
Q Consensus 189 ~P~~~~~p~~~~~~~~~~~~g~~~~l~C~~~g~p~~----~v~W~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~i~~~ 263 (978)
-|.|+.+|.+..+..+ .++.|+|.++..+.. .=.|.++... ..+...... -.-...-...|..-
T Consensus 24 l~~~~~~p~~~yii~~-----~p~~l~c~a~~a~~i~~kc~~~wv~~~~~------~~~~~~d~tsg~~~~~~si~Isr~ 92 (909)
T KOG1480|consen 24 LPHFTTEPKSAYIIKN-----KPLRLQCKANPATQIRFKCNSEWVHQSRH------EKLEGTDETSGLGVREVSIDISRQ 92 (909)
T ss_pred cceeeecCCccceecC-----CCccceecCCcccccccccChhhhcCccc------eeeeccCcccceeEEeeeeeeehh
Confidence 3788999988876544 459999988643322 2235544321 111110000 00001112333322
Q ss_pred CCCCCCe---EEE--EEEEeCceeEEeEEEEEEEeeecc-cccCCCCeeeecccCeEEEeCCCCCCCCceEEEecccccc
Q psy12060 264 RQVEDRG---SYH--CKASNKFGSIISESVQLAFGFIGE-FNLKRAPEIGNQNWGKAMFCDPPTNYPGVNYYWARDYFPN 337 (978)
Q Consensus 264 ~~~~d~G---~Y~--C~a~n~~g~~~s~~~~l~v~~~~~-~~~~~~~~~~~~~~~~~l~C~~~~~~p~~~i~W~~~~~~~ 337 (978)
+.++.| .|. |.|....|...|..+.+++++... +...+.-+.+..+....+.|..+.+.|...+.|+|++..+
T Consensus 93 -~v~~~~~~~d~~cQc~a~~~~g~~~s~~a~vr~ay~rk~f~~~p~~q~V~~~s~~~l~cr~pe~~paae~~w~k~e~~~ 171 (909)
T KOG1480|consen 93 -QVETSGGPEDYWCQCVAWSDDGTVKSRKATVRIAYLRKHFEQSPVGQEVQEETTLQLPCRPPEGDPKAEVEWLKNEVVI 171 (909)
T ss_pred -hhhcccCccceeeeeeeecCCCcchhhhHHHHHHHHHHhhccChhhheecccccccccccCcccchhhhhhccccCCCC
Confidence 333333 454 556666675555545555544433 3333444556667778899999999999999999998775
Q ss_pred cccccceEEEeeCCcEEEeeeeeecceeeEEEEEeecccccccCCceeEEEcc
Q psy12060 338 FVEEDKRVFVSYDGALYFSALEQIDAGNYSCNVQSKVSDTGRNGPFFPLKVFP 390 (978)
Q Consensus 338 ~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~n~~~~~~~~~~~~~l~V~~ 390 (978)
.. ..+.....+..|++..+...|.|+|+|+|.|-.+..... .+.+.|..
T Consensus 172 ~p--d~n~~~~~d~~li~~~arlsd~~nytc~a~ni~~~r~~~--~~~v~vyv 220 (909)
T KOG1480|consen 172 DP--DANVIRASDHNLIISQARLSDSGNYTCEATNIVAKRKSD--PATVQVYV 220 (909)
T ss_pred Cc--cccchhhhcCCccccchhhhhcccceeeeehhhcccccc--ceEEEEEE
Confidence 43 566666778899999999999999999999987543332 34444443
No 323
>cd05902 Ig_Neurocan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan. Ig_Neurocan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Unlike aggrecan which is widely distributed in connective tissue and extracellular matrices, neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many differen
Probab=97.83 E-value=0.00011 Score=62.62 Aligned_cols=83 Identities=19% Similarity=0.307 Sum_probs=52.8
Q ss_pred cCcEEEEEEeecCC-------CCeEEEEEcc--ccccc-------ccccccCCCCCCceEee-------cceEEEeCCCC
Q psy12060 209 LNDITLSCYAGGYP-------NPSYEWFKED--YVQDR-------LVANLIDPLSDKRFTLS-------GGNLIINDPRQ 265 (978)
Q Consensus 209 g~~~~l~C~~~g~p-------~~~v~W~~~~--~~~~~-------~~~~~~~~~~~~~~~~~-------~~~l~i~~~~~ 265 (978)
|.+++|.|...-.| .+.|.|+|.- ..... .....+.+....|..+. +.+|.|.++ +
T Consensus 2 ~~~v~LpC~~~~~p~~~~~~~~~~I~W~k~~~~~~~~~~~v~v~~~~~~~~~~~y~gRvsl~~~~~~~~~asL~i~nv-~ 80 (110)
T cd05902 2 SSSVLLPCVFTLPPSASSPPEGPRIKWTKLRPASGQKQRPVLVARDNVVRVAKAFQGRVSLPGYPKNRYNASLVLSRL-R 80 (110)
T ss_pred CCcEEEeeEEEcCccccCCCCCCEEEEEEeCCCCCceEEEEEECCCCcEEEchhcccEEEeecCCCCCceEEEEECCC-C
Confidence 56799999965333 3699999861 11111 01112334445566652 348999997 9
Q ss_pred CCCCeEEEEEEEeCceeEEeEEEEEEEe
Q psy12060 266 VEDRGSYHCKASNKFGSIISESVQLAFG 293 (978)
Q Consensus 266 ~~d~G~Y~C~a~n~~g~~~s~~~~l~v~ 293 (978)
.+|+|.|+|.+.... ......++|.|.
T Consensus 81 ~~D~G~Y~C~v~~g~-~~~~~~v~L~V~ 107 (110)
T cd05902 81 YSDSGTYRCEVVLGI-NDEQDTVPLEVT 107 (110)
T ss_pred HHHCEEEEEEEEECC-cccEEEEEEEEE
Confidence 999999999999854 223456666664
No 324
>cd05880 Ig_EVA1 Immunoglobulin (Ig)-like domain of epithelial V-like antigen 1 (EVA). Ig_EVA: immunoglobulin (Ig) domain of epithelial V-like antigen 1 (EVA). EVA is also known as myelin protein zero-like 2. EVA is an adhesion molecule, which may play a role in structural organization of the thymus and early lymphocyte development.
Probab=97.82 E-value=7.7e-05 Score=64.84 Aligned_cols=66 Identities=23% Similarity=0.421 Sum_probs=44.7
Q ss_pred CCCCCCcEEEEEEEeecC----CCeeEEEEc----Ccc--C----C-----CCcee----------eecccEEEeCCCCC
Q psy12060 410 APKAGDKVRLECVAFGYP----VPSYNWTRR----GSP--L----P-----RNAYF----------ENFNRILTIPNVKV 460 (978)
Q Consensus 410 ~v~~G~~~~l~C~~~g~p----~~~v~W~~~----~~~--l----~-----~~~~~----------~~~~~~L~i~~~~~ 460 (978)
.+.+|++++|.|.....+ ...|.|++. +.+ + . ....+ ...+.+|.|.+++.
T Consensus 9 ~~~~G~~v~L~C~~s~~~~~~~~~~i~W~~~~~~~~~~~~v~~~~~~~~~~~~~~f~~R~~~~~~~~~~~~sL~I~~v~~ 88 (115)
T cd05880 9 EAVNGTDVRLKCTFSSSAPIGDTLVITWNFRPLDGGREESVFYYHKRPYPPPDGRFKGRVVWDGNIMRRDASILIWQLQP 88 (115)
T ss_pred EEEcCCCEEEEEEEEeCCCCCCcEEEEEEEECCCCCceeEEEEECCCccccCcccccCeEEEecCCcCCceEEEEeeCCh
Confidence 456999999999986433 236999852 111 1 0 00011 11245799999999
Q ss_pred CCCeEEEEEEEeCCC
Q psy12060 461 EDQGEYICRASNDRS 475 (978)
Q Consensus 461 ~d~G~Y~C~a~n~~g 475 (978)
+|+|.|.|.+.|..+
T Consensus 89 ~D~G~Y~C~v~~~~~ 103 (115)
T cd05880 89 TDNGTYTCQVKNPPD 103 (115)
T ss_pred hhCEEEEEEEEeCCC
Confidence 999999999998654
No 325
>cd05886 Ig1_Nectin-1_like First immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111) and similar proteins. Ig1_Nectin-1_like: domain similar to the first immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111). Nectin-1 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. In addition nectins heterophilically trans-interact with other CAMs such as nectin-like molecules (Necls), nectin-1 for example, has been shown to trans-interact with Necl-1. Nectins also interact with various other proteins, including the actin filament (F-actin)-binding protein, afadin. Mutation in the human nectin-1 gene is
Probab=97.82 E-value=0.00022 Score=59.49 Aligned_cols=80 Identities=23% Similarity=0.391 Sum_probs=50.3
Q ss_pred cEEEEEEeec-CCC---CeEEEEEccccccccc---c----cccCCCCCCceEee-----cceEEEeCCCCCCCCeEEEE
Q psy12060 211 DITLSCYAGG-YPN---PSYEWFKEDYVQDRLV---A----NLIDPLSDKRFTLS-----GGNLIINDPRQVEDRGSYHC 274 (978)
Q Consensus 211 ~~~l~C~~~g-~p~---~~v~W~~~~~~~~~~~---~----~~~~~~~~~~~~~~-----~~~l~i~~~~~~~d~G~Y~C 274 (978)
+++|.|.... .|. .+|.|.|....-.+.. . ..+.+....|.... +.+|.|.++ +.+|.|.|+|
T Consensus 2 ~v~L~C~f~~~~~~~~~~~V~W~k~~~~~~~~va~y~~~~g~~~~~~f~~Rv~f~~~~~~daSi~i~nl-~~~D~G~Y~C 80 (99)
T cd05886 2 DVVLHCSFINPLPPVKITQVTWQKLTNGSKQNVAIYNPSMGVSVLPPYRERVTFKNPSFEDGTISLSRL-ELEDEGVYIC 80 (99)
T ss_pred cEEEEeEeecCCCCCCeEEEEEEECCCCCceEEEEECCcCCcccCccccCcEEEcCCCCCcceEEEcCC-ccccCEEEEE
Confidence 4899999873 222 1799998532111100 0 11222233455433 479999998 9999999999
Q ss_pred EEEe-CceeEEeEEEEEEE
Q psy12060 275 KASN-KFGSIISESVQLAF 292 (978)
Q Consensus 275 ~a~n-~~g~~~s~~~~l~v 292 (978)
.+.+ ..|+ .+..+.|.|
T Consensus 81 ~v~t~P~g~-~~~~~~L~V 98 (99)
T cd05886 81 EFATFPTGN-RESQLNLTV 98 (99)
T ss_pred EEEeCCCCC-eEEEEEEEE
Confidence 9999 5665 456666665
No 326
>cd05846 Ig1_MRC-OX-2_like First immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200) and similar proteins. Ig1_ MRC-OX-2_like: domain similar to the first immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200). MRC OX-2 is a membrane glycoprotein expressed in a variety of lymphoid and non-lymphoid cells in rats. It has a similar broad distribution pattern in humans. MRC OX-2 may regulate myeloid cell activity. The protein has an extracellular portion containing two Ig-like domains, a transmembrane portion, and a cytoplasmic portion.
Probab=97.82 E-value=9.6e-05 Score=62.18 Aligned_cols=72 Identities=21% Similarity=0.293 Sum_probs=50.2
Q ss_pred CCcEEEEEEEeecCC-CeeEEEEcCccCC---------CC--------cee-----eecccEEEeCCCCCCCCeEEEEEE
Q psy12060 414 GDKVRLECVAFGYPV-PSYNWTRRGSPLP---------RN--------AYF-----ENFNRILTIPNVKVEDQGEYICRA 470 (978)
Q Consensus 414 G~~~~l~C~~~g~p~-~~v~W~~~~~~l~---------~~--------~~~-----~~~~~~L~i~~~~~~d~G~Y~C~a 470 (978)
|++++|.|....... -.|.|+|....-+ .. .+. ...+.+|.|.+++.+|+|.|.|.+
T Consensus 1 G~~vtL~C~~~~~~~~~~v~W~k~~~~~~~~i~~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~nv~~~D~G~Y~C~~ 80 (97)
T cd05846 1 GGNVTLSCNLTLPEEVLQVTWQKIQGSSPENIATYSEKYGVKIQPSYFRRRSITSLGLNSTSITIWNVTLEDEGCYKCIF 80 (97)
T ss_pred CCcEEEEEEeCCCCeeEEEEEEEcCCCCceEEEEEcccCCcccCCCccCeEEEcCCCCCccEEEEeCCceeeeEEEEEEE
Confidence 789999998764332 2699998532100 00 000 113457999999999999999998
Q ss_pred Ee-CCCceEEEEEEEE
Q psy12060 471 SN-DRSALESSVTISI 485 (978)
Q Consensus 471 ~n-~~g~~~~~~~l~V 485 (978)
.. ..|..+..+.|+|
T Consensus 81 ~~~p~g~~~~~~~L~v 96 (97)
T cd05846 81 NTFPDGSKSGTMCLTV 96 (97)
T ss_pred EeCCCCCeeeEEEEEE
Confidence 75 5677788888877
No 327
>cd05888 Ig1_Nectin-4_like Frst immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor) and similar proteins. Ig1_Nectin-4_like: domain similar to the first immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor). Nectin-4 belongs to the nectin family, which is comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example nectin-4 trans-interacts with nectin-1. Nectin-4 has also been shown to interact with the actin filament-binding protein, afadin. Unlike the other nectins, which are widely expressed in adult tissues, nectin-4 is mainly expressed during embryogenesis, and is not detected in normal adult
Probab=97.81 E-value=0.00015 Score=61.28 Aligned_cols=70 Identities=23% Similarity=0.390 Sum_probs=48.6
Q ss_pred cEEEEEEEeecC---CCeeEEEEcCcc-----C----C-----------CCceee----ecccEEEeCCCCCCCCeEEEE
Q psy12060 416 KVRLECVAFGYP---VPSYNWTRRGSP-----L----P-----------RNAYFE----NFNRILTIPNVKVEDQGEYIC 468 (978)
Q Consensus 416 ~~~l~C~~~g~p---~~~v~W~~~~~~-----l----~-----------~~~~~~----~~~~~L~i~~~~~~d~G~Y~C 468 (978)
+++|.|.....+ ..+|.|+|.... + . ....+. ..+..|+|.+++.+|+|.|.|
T Consensus 2 ~v~L~C~~~~~~~~~~~~v~W~k~~~~~~~~~i~~~~~~~~~~~~~~~~~Rv~f~~~~~~~~~sL~I~nv~~sD~GtY~C 81 (100)
T cd05888 2 DTRLPCRYNVSDGETVVQVLWIRENAGGVEEEIALLHFKYGQTEFHAYEGRVRFETPNPIADGALILRNAVQADEGKYKC 81 (100)
T ss_pred CEEEEeEEecCCCCcEEEEEEEEccCCCCcEEEEEEeccCCcccCCCccCcEEEeCCCCCCceEEEEecCccccceEEEE
Confidence 689999886433 338999994311 1 0 001111 124579999999999999999
Q ss_pred EEEe-CCCceEEEEEEEE
Q psy12060 469 RASN-DRSALESSVTISI 485 (978)
Q Consensus 469 ~a~n-~~g~~~~~~~l~V 485 (978)
.+.+ ..|..+..+.|.|
T Consensus 82 ~v~~~p~g~~~~~~~L~V 99 (100)
T cd05888 82 RVITFPAGNFEAELVLTV 99 (100)
T ss_pred EEEeCCCCCeeeEEEEEe
Confidence 9997 6677777788776
No 328
>cd05888 Ig1_Nectin-4_like Frst immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor) and similar proteins. Ig1_Nectin-4_like: domain similar to the first immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor). Nectin-4 belongs to the nectin family, which is comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example nectin-4 trans-interacts with nectin-1. Nectin-4 has also been shown to interact with the actin filament-binding protein, afadin. Unlike the other nectins, which are widely expressed in adult tissues, nectin-4 is mainly expressed during embryogenesis, and is not detected in normal adult
Probab=97.76 E-value=0.00024 Score=59.95 Aligned_cols=80 Identities=19% Similarity=0.323 Sum_probs=48.8
Q ss_pred cEEEEEEeecCC---CCeEEEEEccccccc--c---c---ccccCCCCCCceEe------ecceEEEeCCCCCCCCeEEE
Q psy12060 211 DITLSCYAGGYP---NPSYEWFKEDYVQDR--L---V---ANLIDPLSDKRFTL------SGGNLIINDPRQVEDRGSYH 273 (978)
Q Consensus 211 ~~~l~C~~~g~p---~~~v~W~~~~~~~~~--~---~---~~~~~~~~~~~~~~------~~~~l~i~~~~~~~d~G~Y~ 273 (978)
+++|.|.....+ ...|.|+|....-.. + . .....+..+.|... .+.+|.|.++ +.+|+|.|.
T Consensus 2 ~v~L~C~~~~~~~~~~~~v~W~k~~~~~~~~~i~~~~~~~~~~~~~~~~~Rv~f~~~~~~~~~sL~I~nv-~~sD~GtY~ 80 (100)
T cd05888 2 DTRLPCRYNVSDGETVVQVLWIRENAGGVEEEIALLHFKYGQTEFHAYEGRVRFETPNPIADGALILRNA-VQADEGKYK 80 (100)
T ss_pred CEEEEeEEecCCCCcEEEEEEEEccCCCCcEEEEEEeccCCcccCCCccCcEEEeCCCCCCceEEEEecC-ccccceEEE
Confidence 489999986433 348999995321100 0 0 00111111233333 2558999998 999999999
Q ss_pred EEEEe-CceeEEeEEEEEEE
Q psy12060 274 CKASN-KFGSIISESVQLAF 292 (978)
Q Consensus 274 C~a~n-~~g~~~s~~~~l~v 292 (978)
|.+.+ ..|.. ...+.|.|
T Consensus 81 C~v~~~p~g~~-~~~~~L~V 99 (100)
T cd05888 81 CRVITFPAGNF-EAELVLTV 99 (100)
T ss_pred EEEEeCCCCCe-eeEEEEEe
Confidence 99997 55653 55666654
No 329
>cd00098 IgC Immunoglobulin Constant domain. IgC: Immunoglobulin constant domain (IgC). Members of the IgC family are components of immunoglobulin, T-cell receptors, CD1 cell surface glycoproteins, secretory glycoproteins A/C, and Major Histocompatibility Complex (MHC) class I/II molecules. In immunoglobulins, each chain is composed of one variable domain (IgV) and one or more IgC domains. These names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. The IgV domain is responsible for antigen binding, and the IgC domain is involved in oligomerization and molecular interactions.
Probab=97.75 E-value=9.6e-05 Score=62.20 Aligned_cols=72 Identities=26% Similarity=0.446 Sum_probs=48.5
Q ss_pred cCCCceeEEEEeecC-C-CCeeEEeECCEECCCCCC---CCCCCCcEEEecCEEEEEeCCCCCCCeEEEEEEEcCCCc
Q psy12060 501 DNQADLTWTCEAFGV-P-DVTYSWFRNGELLNSETL---PLEDQDRYFIQDNVLTIRYLNPERDPAMYQCRAKNQLKT 573 (978)
Q Consensus 501 ~~g~~~~l~C~~~~~-p-~~~i~W~~~g~~~~~~~~---~~~~~~~~~~~~~~l~i~~~~~~~d~G~Y~C~a~n~~g~ 573 (978)
..|+.++|.|.+.|+ | .+.|+|+++|..+..... .....+........|.+..... ++.+.|+|.|.+....
T Consensus 11 ~~~~~~~L~C~a~g~~P~~~~i~W~~~g~~~~~~~~~~~~~~~~~gt~~~~s~l~v~~~~~-~~~~~y~C~v~h~~~~ 87 (95)
T cd00098 11 LLGGSVTLTCLATGFYPPDITVTWLKNGKELTSGVTTTPPVPNSDGTYSVSSQLTVSPSDW-NSGDTYTCVVTHESLP 87 (95)
T ss_pred HcCCCeEEEEEEeeEECCCcEEEEEECCEECCCceeccccccCCCCCEEEEEEEEECHHHh-CCCCCEEEEEEeCCCC
Confidence 478999999999987 6 578999999998864421 1111222222233555554432 5899999999987643
No 330
>PHA02987 Ig domain OX-2-like protein; Provisional
Probab=97.75 E-value=0.00016 Score=65.65 Aligned_cols=87 Identities=15% Similarity=0.218 Sum_probs=57.1
Q ss_pred cccCcEEEEEEee-cCCCCeEEEEEcccccccccc--cccCCCCCCceEe-----ecceEEEeCCCCCCCCeEEEEEEEe
Q psy12060 207 SILNDITLSCYAG-GYPNPSYEWFKEDYVQDRLVA--NLIDPLSDKRFTL-----SGGNLIINDPRQVEDRGSYHCKASN 278 (978)
Q Consensus 207 ~~g~~~~l~C~~~-g~p~~~v~W~~~~~~~~~~~~--~~~~~~~~~~~~~-----~~~~l~i~~~~~~~d~G~Y~C~a~n 278 (978)
++|++++|.|... +...+.+.|+|..+.+..... ..+.+.-..|+.. .+.+|.|.++ +.+|+|.|+|...-
T Consensus 28 ~ege~VtLsCs~t~s~~~~qVtWkK~~~~IatY~~~g~~i~~~Fk~Rve~mS~s~~~StItIknV-t~sDeGcY~C~F~t 106 (189)
T PHA02987 28 SEHVNVKISCNKTSSFNSILITWKKNNKTIAGYGPCGPVIVDKFKNKIEYLSKSFNESTILIKNV-SLKDNGCYTCIFNT 106 (189)
T ss_pred cCCCCEEEEEecCCCCccceEEEEEcCCCEEEEecCCcEEChhhcCeEEEeccCCCcceEEEEeC-ChhhCeEEEEEEEe
Confidence 4577899999984 666789999997653321111 1111212235543 5668999998 89999999999863
Q ss_pred -CceeEEeEEEEEEEee
Q psy12060 279 -KFGSIISESVQLAFGF 294 (978)
Q Consensus 279 -~~g~~~s~~~~l~v~~ 294 (978)
..|...+..+-|+|..
T Consensus 107 fp~G~~~~gt~CLtVt~ 123 (189)
T PHA02987 107 LLSKNNEKGVVCLNVTT 123 (189)
T ss_pred cCCCCCceeEEEEEEEc
Confidence 3453455666666643
No 331
>cd04984 IgV_L_lambda Immunoglobulin (Ig) lambda light chain variable (V) domain. IgV_L_lambda: Immunoglobulin (Ig) light chain, lambda type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.
Probab=97.75 E-value=0.00019 Score=60.66 Aligned_cols=72 Identities=21% Similarity=0.315 Sum_probs=45.4
Q ss_pred cccCcEEEEEEeecC--CCCeEEEEEcccc--cccccccc--cCCCCCCceEee----cceEEEeCCCCCCCCeEEEEEE
Q psy12060 207 SILNDITLSCYAGGY--PNPSYEWFKEDYV--QDRLVANL--IDPLSDKRFTLS----GGNLIINDPRQVEDRGSYHCKA 276 (978)
Q Consensus 207 ~~g~~~~l~C~~~g~--p~~~v~W~~~~~~--~~~~~~~~--~~~~~~~~~~~~----~~~l~i~~~~~~~d~G~Y~C~a 276 (978)
++|++|+|.|...+. ....+.|||.... ...+.... .......++... ..+|.|.++ +.+|+|.|.|.+
T Consensus 4 ~~G~~v~l~C~~~~~~~~~~~i~Wy~q~~g~~~~~l~~~~~~~~~~~~~rf~~~~~~~~~~L~I~~~-~~~Dsg~Y~C~~ 82 (98)
T cd04984 4 SPGETVTITCTGSSGNISGNYVNWYQQKPGSAPRYLIYEDSDRPSGIPDRFSGSKSGNTASLTISGA-QTEDEADYYCQV 82 (98)
T ss_pred CCCCCEEEEEEEcCCCcCCCCEEEEEECCCCCccEEEEeccccCCCCCCCEEEEccCCEEEEEECCC-ChhhCEEEEEEE
Confidence 468889999998765 5568999996532 11111100 001112344432 236889887 899999999998
Q ss_pred EeC
Q psy12060 277 SNK 279 (978)
Q Consensus 277 ~n~ 279 (978)
.+.
T Consensus 83 ~~~ 85 (98)
T cd04984 83 WDS 85 (98)
T ss_pred ccC
Confidence 753
No 332
>cd05880 Ig_EVA1 Immunoglobulin (Ig)-like domain of epithelial V-like antigen 1 (EVA). Ig_EVA: immunoglobulin (Ig) domain of epithelial V-like antigen 1 (EVA). EVA is also known as myelin protein zero-like 2. EVA is an adhesion molecule, which may play a role in structural organization of the thymus and early lymphocyte development.
Probab=97.70 E-value=0.00031 Score=61.03 Aligned_cols=73 Identities=18% Similarity=0.229 Sum_probs=43.2
Q ss_pred ccCcEEEEEEeecCC----CCeEEEEEc---ccccccccccc------cCCCCCCceEe------ecceEEEeCCCCCCC
Q psy12060 208 ILNDITLSCYAGGYP----NPSYEWFKE---DYVQDRLVANL------IDPLSDKRFTL------SGGNLIINDPRQVED 268 (978)
Q Consensus 208 ~g~~~~l~C~~~g~p----~~~v~W~~~---~~~~~~~~~~~------~~~~~~~~~~~------~~~~l~i~~~~~~~d 268 (978)
+|++++|.|.....+ ...|.|++. +..-..+.... .......|... .+.+|.|.++ +.+|
T Consensus 12 ~G~~v~L~C~~s~~~~~~~~~~i~W~~~~~~~~~~~~v~~~~~~~~~~~~~~f~~R~~~~~~~~~~~~sL~I~~v-~~~D 90 (115)
T cd05880 12 NGTDVRLKCTFSSSAPIGDTLVITWNFRPLDGGREESVFYYHKRPYPPPDGRFKGRVVWDGNIMRRDASILIWQL-QPTD 90 (115)
T ss_pred cCCCEEEEEEEEeCCCCCCcEEEEEEEECCCCCceeEEEEECCCccccCcccccCeEEEecCCcCCceEEEEeeC-Chhh
Confidence 467799999976433 246999852 11100010000 00111123322 2457999998 9999
Q ss_pred CeEEEEEEEeCce
Q psy12060 269 RGSYHCKASNKFG 281 (978)
Q Consensus 269 ~G~Y~C~a~n~~g 281 (978)
+|.|+|.+.|..+
T Consensus 91 ~G~Y~C~v~~~~~ 103 (115)
T cd05880 91 NGTYTCQVKNPPD 103 (115)
T ss_pred CEEEEEEEEeCCC
Confidence 9999999998665
No 333
>KOG4152|consensus
Probab=97.70 E-value=0.00011 Score=75.95 Aligned_cols=124 Identities=24% Similarity=0.292 Sum_probs=77.5
Q ss_pred cCCCceeEEEEEEecCCccCCCCCCCCCCCCCCCCCCCCCCceeecccccCcEEEEEEeCCCCCCCCCcceEEEEEEecC
Q psy12060 850 LVPWSTYEFKVIAGNELGYGEPSSPSPQYNTPADKPYQAPSRIGGGGGKIGDLSISWEPLPREKQNAPNIYYKIFWRKKN 929 (978)
Q Consensus 850 L~p~~~Y~~~v~A~N~~G~g~~s~~~~~~~t~~~~P~~~P~~~~~~~~~~~si~v~W~~p~~~~~~g~i~~Y~i~~~~~~ 929 (978)
|.+++.|+|||.|.|..|.|+.|.+....+-.++.| ++|+.+++.. +.--|.+.|+|| ...+.|.|..|..+-.-..
T Consensus 654 lv~Gq~yrfrV~aIng~G~gp~s~i~~~kTc~pG~P-~apS~~ri~k-~~eGi~l~wepp-t~p~sg~Iieys~ylAi~t 730 (830)
T KOG4152|consen 654 LVTGQAYRFRVTAINGKGPGPASTILKLKTCAPGKP-TAPSGARIKK-TIEGISLVWEPP-TKPGSGTIIEYSPYLAIIT 730 (830)
T ss_pred cccccceeeeeeeeeccCCCchhhheeeeeccCCCC-CCcccccccc-cccceeecccCC-CCCCCcceEEeehhhHhhh
Confidence 899999999999999999999999884444455566 6787777653 334589999983 3444777888876543222
Q ss_pred ----Cccceeeeee-eccceeE-------EEEEcCCCCceeeEEEEEEEecCCCCCCCC
Q psy12060 930 ----DTEFQSETLK-EYGNVGI-------AVVRIPSEFYYTEYEVKVQAINDVGPGPES 976 (978)
Q Consensus 930 ----~~~~~~~~~~-~~~~~~~-------~~~~l~~L~p~t~Y~~~V~A~n~~G~gp~S 976 (978)
...-+..-.. ..+-.+. ...-+.+...+-.-.|||.|.|..|.||..
T Consensus 731 q~~~~~~sql~fmr~ycg~~t~c~vt~g~l~tA~~d~t~~paivfri~aknekGyGpat 789 (830)
T KOG4152|consen 731 QAGATGVSQLPFMRSYCGIITTCVVTSGKLITAVPDITTGPAIVFRIVAKNEKGYGPAT 789 (830)
T ss_pred hhhccCccccceeeeecccceeeEEecccceeeccccccCcceEEEEEecCCCCCCcce
Confidence 0000000000 0000000 111122333456678999999999999964
No 334
>PHA03271 envelope glycoprotein C; Provisional
Probab=97.69 E-value=0.048 Score=55.83 Aligned_cols=202 Identities=16% Similarity=0.175 Sum_probs=106.5
Q ss_pred EEEEEeCCCCCCCeEEEEEEEcCCCce--eeEEEEEEEEcCCccccCCCCcceeecCCCeEEEEEeeccCCCC---eeEE
Q psy12060 548 VLTIRYLNPERDPAMYQCRAKNQLKTR--YSSAQLRVLTLKPSFKKRPLESETYAGEGGNVTIFCNPEAAPKP---KFVW 622 (978)
Q Consensus 548 ~l~i~~~~~~~d~G~Y~C~a~n~~g~~--~~~~~l~v~~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~---~i~W 622 (978)
.|.|.++.. .++|.|+-...+..... .....+.+..-+|.+...+.+ +..|+...-.|.+..+-++ .+.|
T Consensus 208 ~v~I~svD~-~t~Gy~~v~~~d~~N~~i~e~~~~~~v~~RPPsVsV~a~P----VL~Ge~YkAtC~vAnYYPP~SvrlrW 282 (490)
T PHA03271 208 GVEIRNVDY-ADNGYIQVIMRDPFNRPLLDKHIYIRVCQRPASVDVLAPP----VLSGENYKASCIVRHFYPPGSVYVSW 282 (490)
T ss_pred eEEEEEeec-ccceEEEEEecCCCCCccccceEEEEEEecCCCccccCCc----cccCCCceEEEEeeeecCCCceEEEE
Confidence 688999997 89997766665544333 233445555556667665433 6789999999999776444 7999
Q ss_pred eeCCEEecCCCcEEEe----e--c-----CcEEEccccCCCCEEEEEEEEeCCceeeeeEEEEEEeCCceeeeCCCceEE
Q psy12060 623 KKDGNIIGSGGRRKIF----E--N-----GNLLISPVSRDDSGIYSCTATNVHGMDESKGRLIVLHGPSYYEQLPPKITI 691 (978)
Q Consensus 623 ~~~g~~~~~~~~~~~~----~--~-----~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~p~~~~~~~~~~~~ 691 (978)
++||.++......... . . ++|.+.+...+..-..+|.+.=..+....+. .-...|.... ++.+.+
T Consensus 283 f~nG~~V~~~~~rdt~~~w~d~~~g~S~VSTltl~a~~~~~PPsLRCeV~W~rd~v~s~r--nAaatP~VY~--~P~ISv 358 (490)
T PHA03271 283 RQNGNIATPRKDRDGSFWWFESGRGATLVSTITLGNSGIDPPPKISCLVAWKQGDMISTT--NATAIPTVYH--HPRISL 358 (490)
T ss_pred EeCCccccCccccceeEEEecCCCceeEEEEEEcccccCCCCCCceEEEEEccCCceeee--ecccCCcccc--CCeEEE
Confidence 9999876533211110 1 1 1233333222333378999875443222221 2112222221 222322
Q ss_pred EccccEEEEEEeeecCCcCeEEEEeeCCEEccccccccccCCeeecCCceEEEec-cCCC---CCEEEEEEEE
Q psy12060 692 AAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEITN-ASFA---DAGEYECVVK 760 (978)
Q Consensus 692 ~~g~~~~l~C~~~~~p~~~~~~~W~~~g~~~~~~~~~~~~~~~~~~~~~~l~i~~-~~~~---d~g~Y~c~a~ 760 (978)
...+ -...|.+.-.|. .+.+.|.-+.....................+...|.+ ...+ .--+|+|++.
T Consensus 359 ~Fed-G~AVCtA~CVP~-gV~lrWlVgD~p~pn~t~d~~itGvC~erPGlVNLrS~lPlSd~dgpveYTCrL~ 429 (490)
T PHA03271 359 AFKD-GYAICTIECVPS-GITVRWLVHDEPQPNTTYDTVVTGLCRTIDRHRNLISRIPVQDNWQKTKYTCRLI 429 (490)
T ss_pred EEeC-CEEEEeccccCC-CcEEEEEecCCCCCCcccccccccccCCCCCceeeeccCCchhcCCceeEEEEEe
Confidence 2221 223477777764 6889998776654332100000011111123444444 3333 3368999985
No 335
>PF07686 V-set: Immunoglobulin V-set domain; InterPro: IPR013106 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the V-set domains, which are Ig-like domains resembling the antibody variable domain. V-set domains are found in diverse protein families, including immunoglobulin light and heavy chains; in several T-cell receptors such as CD2 (Cluster of Differentiation 2), CD4, CD80, and CD86; in myelin membrane adhesion molecules; in junction adhesion molecules (JAM); in tyrosine-protein kinase receptors; and in the programmed cell death protein 1 (PD1).; PDB: 1PY9_A 2NXY_D 1U9K_B 3RNK_A 3BP6_A 3BIK_B 3SBW_A 1NPU_A 3BP5_A 3RNQ_A ....
Probab=97.68 E-value=0.00032 Score=61.52 Aligned_cols=85 Identities=24% Similarity=0.383 Sum_probs=52.6
Q ss_pred cccCcEEEEEEee-cCCCCeEEEEEcccccc-c-c-------cccccCCCCCCceEee------cceEEEeCCCCCCCCe
Q psy12060 207 SILNDITLSCYAG-GYPNPSYEWFKEDYVQD-R-L-------VANLIDPLSDKRFTLS------GGNLIINDPRQVEDRG 270 (978)
Q Consensus 207 ~~g~~~~l~C~~~-g~p~~~v~W~~~~~~~~-~-~-------~~~~~~~~~~~~~~~~------~~~l~i~~~~~~~d~G 270 (978)
.+|++++|.|... ......+.|++....-. . + ...........+..+. +.+|.|.++ +.+|+|
T Consensus 14 ~~G~~v~L~C~~~~~~~~~~v~W~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~i~~l-~~~DsG 92 (114)
T PF07686_consen 14 QEGESVTLPCSYSSSSNQSSVYWYRQSPGQGPQLIIRYSLSSTNETPTPSYSGRFTFSGNGSQNNFSLTIKNL-QPSDSG 92 (114)
T ss_dssp ETTSEEEEEEEEESSSSGSEEEEEEEETTSEEEEEEEEETTEEEEEEETTETTTEEEEEETTTTEEEEEESSE-SGGGEE
T ss_pred ecCCCEEEEEEEeCCCCcceEEEEEECccccceeeeeeccceeeeccccceeeeeeeeecccCCeEEEEECCC-CcCcCE
Confidence 3577799999998 55667999999654110 0 0 0111112223343322 236999997 999999
Q ss_pred EEEEEEEeCceeEEeEEEEEEE
Q psy12060 271 SYHCKASNKFGSIISESVQLAF 292 (978)
Q Consensus 271 ~Y~C~a~n~~g~~~s~~~~l~v 292 (978)
.|.|.+...........+.|.|
T Consensus 93 ~Y~C~v~~~~~~~~~~~~~L~V 114 (114)
T PF07686_consen 93 TYFCQVSTSNEQSFGNGTKLTV 114 (114)
T ss_dssp EEEEEEEESSEEEEEEEEEEEE
T ss_pred EEEEEEEECCCCEECCcEEEEC
Confidence 9999999874443444555543
No 336
>PHA03273 envelope glycoprotein C; Provisional
Probab=97.66 E-value=0.017 Score=60.23 Aligned_cols=163 Identities=18% Similarity=0.221 Sum_probs=92.9
Q ss_pred EEEEEeCCCCCCCeEEEEEEEcCCCceeeEEEEEEEEc-CCccccCCCCcceeecCCCeEEEEEeeccCCCC---eeEEe
Q psy12060 548 VLTIRYLNPERDPAMYQCRAKNQLKTRYSSAQLRVLTL-KPSFKKRPLESETYAGEGGNVTIFCNPEAAPKP---KFVWK 623 (978)
Q Consensus 548 ~l~i~~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~-~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~---~i~W~ 623 (978)
.|+|..++. ..+|.|+=...+..+.......+.|..+ +|.+.+.+.+ +.+|+...-.|.+..+-++ .+.|+
T Consensus 199 ~LtI~slta-aTeGvYtWr~~~~n~t~~~~~~VtV~~yr~Psvsv~~~P----vL~Ge~y~A~C~aa~YYPp~Sv~~rWf 273 (486)
T PHA03273 199 PLTIKSVDW-RTAGVYVWSLYAKNGTLVNSTSVTVSTYNAPLVDLSVHP----SLKGENYRAVCVVASYFPHSSVKLRWY 273 (486)
T ss_pred ceEEEecch-hhceEEEEEEecCCCceeeeeEEEEEEecCCcccccCCc----cccCCCceEEEEeeeecCCCceEEEEE
Confidence 489999987 8999998666565555555555666444 5665554432 6789999999999776444 79999
Q ss_pred eCCEEecC-CC---cEEEeecC------cEEEccccC-CCCEEEEEEEEeCCceeeeeEEEEEEeCCceeeeCCCceEEE
Q psy12060 624 KDGNIIGS-GG---RRKIFENG------NLLISPVSR-DDSGIYSCTATNVHGMDESKGRLIVLHGPSYYEQLPPKITIA 692 (978)
Q Consensus 624 ~~g~~~~~-~~---~~~~~~~~------~l~i~~~~~-~d~G~Y~C~a~n~~g~~~~~~~l~v~~~p~~~~~~~~~~~~~ 692 (978)
+||.++.. .. ......+| +|++..... +..-..+|.+.-..+.. +...+.-...|.+.. ++.+.+.
T Consensus 274 ~dg~~V~~~~~~~~~~~~~~~gl~T~vStlt~~~~~~~~~PP~lrC~v~W~rd~v-S~~RfsAt~~P~Vy~--~P~Is~~ 350 (486)
T PHA03273 274 KNAKEVDFTKYVTNASSVWVDGLITRISTLSIPVDPDEEYTPSLRCSIEWYRDEV-SFARIAKAGTPSVFV--APTVSVT 350 (486)
T ss_pred eCCeeccccccceeeEEEecCCceEEEEEEeccCcccCCCCCCceEEEEEccCCc-ceeeccccccCcccc--CCeEEEE
Confidence 99998872 21 11111222 233333211 22336899886433332 112211112222211 2223322
Q ss_pred ccccEEEEEEeeecCCcCeEEEEeeCC
Q psy12060 693 AHRNLQLRCSAHTEELLDVAYIWTHNG 719 (978)
Q Consensus 693 ~g~~~~l~C~~~~~p~~~~~~~W~~~g 719 (978)
.++ -...|.+.-.|...+.+.|.-+.
T Consensus 351 F~~-G~AVCtA~CVP~egV~l~W~v~D 376 (486)
T PHA03273 351 VED-GDAVCTAKCVPSTGVFVSWSVND 376 (486)
T ss_pred EeC-CEEEEecccccCCCeeEEEEccC
Confidence 222 22348887777556889998766
No 337
>PHA03271 envelope glycoprotein C; Provisional
Probab=97.66 E-value=0.0057 Score=62.21 Aligned_cols=161 Identities=11% Similarity=0.237 Sum_probs=93.7
Q ss_pred cEEEeeeeeecceeeEEEEEeecccccccCCceeEEEccCCCccccccCCCCCCCCCCCCCCCCcEEEEEEEeecCCC--
Q psy12060 352 ALYFSALEQIDAGNYSCNVQSKVSDTGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPEAPKAGDKVRLECVAFGYPVP-- 429 (978)
Q Consensus 352 ~L~i~~~~~~d~G~Y~C~~~n~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~v~~G~~~~l~C~~~g~p~~-- 429 (978)
.|.|.++...|+|.|.-...+... .......+.+.+...|+...+.. ..+..|+...-.|.+..+-+|
T Consensus 208 ~v~I~svD~~t~Gy~~v~~~d~~N-~~i~e~~~~~~v~~RPPsVsV~a---------~PVL~Ge~YkAtC~vAnYYPP~S 277 (490)
T PHA03271 208 GVEIRNVDYADNGYIQVIMRDPFN-RPLLDKHIYIRVCQRPASVDVLA---------PPVLSGENYKASCIVRHFYPPGS 277 (490)
T ss_pred eEEEEEeecccceEEEEEecCCCC-CccccceEEEEEEecCCCccccC---------CccccCCCceEEEEeeeecCCCc
Confidence 589999999999966554444322 22233446666666665444332 345799999999999864333
Q ss_pred -eeEEEEcCccCCCCceee-------e-----cccEEEeCCCCCCCCeEEEEEEEeCCCce----EEEEEEEEEeeceee
Q psy12060 430 -SYNWTRRGSPLPRNAYFE-------N-----FNRILTIPNVKVEDQGEYICRASNDRSAL----ESSVTISIQAEPNFT 492 (978)
Q Consensus 430 -~v~W~~~~~~l~~~~~~~-------~-----~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~----~~~~~l~V~~~p~~~ 492 (978)
.++|++||.++......+ . .-++|.+.+...+..=..+|.+.=..+.. ++++.-.|..+|.+.
T Consensus 278 vrlrWf~nG~~V~~~~~rdt~~~w~d~~~g~S~VSTltl~a~~~~~PPsLRCeV~W~rd~v~s~rnAaatP~VY~~P~IS 357 (490)
T PHA03271 278 VYVSWRQNGNIATPRKDRDGSFWWFESGRGATLVSTITLGNSGIDPPPKISCLVAWKQGDMISTTNATAIPTVYHHPRIS 357 (490)
T ss_pred eEEEEEeCCccccCccccceeEEEecCCCceeEEEEEEcccccCCCCCCceEEEEEccCCceeeeecccCCccccCCeEE
Confidence 699999998875432111 1 01234443332223337899987543322 223334455566554
Q ss_pred ccCCcccccCCCceeEEEEeecCC-CCeeEEeECCEECC
Q psy12060 493 IPLTDKHMDNQADLTWTCEAFGVP-DVTYSWFRNGELLN 530 (978)
Q Consensus 493 ~~~~~~~~~~g~~~~l~C~~~~~p-~~~i~W~~~g~~~~ 530 (978)
+. +..|. ..|.+.--| ...+.|+-++...+
T Consensus 358 v~-----FedG~---AVCtA~CVP~gV~lrWlVgD~p~p 388 (490)
T PHA03271 358 LA-----FKDGY---AICTIECVPSGITVRWLVHDEPQP 388 (490)
T ss_pred EE-----EeCCE---EEEeccccCCCcEEEEEecCCCCC
Confidence 32 23332 346665443 67899998766543
No 338
>cd05901 Ig_Versican Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican. Ig_Versican: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Like aggrecan, versican has a wide distribution in connective tissue and extracellular matrices. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA
Probab=97.64 E-value=0.00059 Score=58.12 Aligned_cols=83 Identities=18% Similarity=0.289 Sum_probs=52.6
Q ss_pred cCcEEEEEEeecCCC-----------CeEEEEEcc-----ccccc-------ccccccCCCCCCceEe-------ecceE
Q psy12060 209 LNDITLSCYAGGYPN-----------PSYEWFKED-----YVQDR-------LVANLIDPLSDKRFTL-------SGGNL 258 (978)
Q Consensus 209 g~~~~l~C~~~g~p~-----------~~v~W~~~~-----~~~~~-------~~~~~~~~~~~~~~~~-------~~~~l 258 (978)
|.+++|.|...-.|. ..|.|+|-. ....+ .....+.+....|..+ .+.+|
T Consensus 2 ~g~v~LPC~f~~~p~~p~~~~~~~~~~rIkW~~~~~~~~g~~~~e~~Vlv~~~g~~~~~~~y~gRv~l~~~~~~~g~asL 81 (117)
T cd05901 2 SGSVVLPCRFSTLPTLPPSVITTSEFLRIKWTKIEVDKNGKDHKETTVLVAQNGIIKIGQEYMGRVSVPSHPEDQGDASL 81 (117)
T ss_pred CCCEEEeeEEEecCCCCCcccCCCCCcEEEEEEecccccccCCCccEEEEEECCEEEECCcccCcEEeeccCCcCCceEE
Confidence 567999999874441 389999851 11100 0011222334455554 24589
Q ss_pred EEeCCCCCCCCeEEEEEEEeCceeEEeEEEEEEEe
Q psy12060 259 IINDPRQVEDRGSYHCKASNKFGSIISESVQLAFG 293 (978)
Q Consensus 259 ~i~~~~~~~d~G~Y~C~a~n~~g~~~s~~~~l~v~ 293 (978)
.|.++ +.+|+|.|+|.+.+.... ....++|.|.
T Consensus 82 ~i~~v-~~sD~G~Y~C~V~~g~~~-~~~~v~L~V~ 114 (117)
T cd05901 82 TIVKL-RASDAGVYRCEVMHGIED-TQDTVSLDVS 114 (117)
T ss_pred EEccc-ccccCEEEEEEEEECCcc-cEEEEEEEEE
Confidence 99998 999999999999987644 2456666654
No 339
>cd04982 IgV_TCR_gamma Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) gamma chain. IgV_TCR_gamma: immunoglobulin (Ig) variable (V) domain of the gamma chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is
Probab=97.64 E-value=0.00022 Score=62.55 Aligned_cols=71 Identities=20% Similarity=0.434 Sum_probs=45.6
Q ss_pred cccCcEEEEEEeec--CCCCeEEEEEccc--ccccccccc-------cCCCCCCceEee------cceEEEeCCCCCCCC
Q psy12060 207 SILNDITLSCYAGG--YPNPSYEWFKEDY--VQDRLVANL-------IDPLSDKRFTLS------GGNLIINDPRQVEDR 269 (978)
Q Consensus 207 ~~g~~~~l~C~~~g--~p~~~v~W~~~~~--~~~~~~~~~-------~~~~~~~~~~~~------~~~l~i~~~~~~~d~ 269 (978)
.+|++++|.|.+.+ .+.+.+.|||... ....+.... .......|+... ...|.|.++ +.+|+
T Consensus 11 ~~G~~v~l~C~~~~~~~~~~~v~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~~-~~~Ds 89 (116)
T cd04982 11 EESKSVTISCKVSGIDFSTTYIHWYRQKPGQALERLLYVSSTSTQRKLSGGTKNKFEARKDVGKSTSTLTIQNL-EKEDS 89 (116)
T ss_pred CCCCCEEEEEEEeCCCccccEEEEEEECCCCCCEEEEEEecCCCcEEeCcccCCCEEEEEECCCCEEEEEEEEC-CHHHC
Confidence 34777999999987 6778999999632 111111000 011123454432 236899998 89999
Q ss_pred eEEEEEEEe
Q psy12060 270 GSYHCKASN 278 (978)
Q Consensus 270 G~Y~C~a~n 278 (978)
|.|.|.+..
T Consensus 90 g~Y~C~~~~ 98 (116)
T cd04982 90 ATYYCAYWE 98 (116)
T ss_pred EEEEEEEec
Confidence 999999864
No 340
>cd05715 Ig_P0-like Immunoglobulin (Ig)-like domain of Protein zero (P0) and similar proteins. Ig_P0ex-like: domain similar to the immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an extracellular Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin. This group also contains the Ig domain of Sodium channel subunit beta-2
Probab=97.63 E-value=0.00046 Score=60.33 Aligned_cols=73 Identities=19% Similarity=0.292 Sum_probs=43.6
Q ss_pred ccCcEEEEEEeecCC----CCeEEEEEcccccc--c-cc---ccc----cCCCCCCceEee------cceEEEeCCCCCC
Q psy12060 208 ILNDITLSCYAGGYP----NPSYEWFKEDYVQD--R-LV---ANL----IDPLSDKRFTLS------GGNLIINDPRQVE 267 (978)
Q Consensus 208 ~g~~~~l~C~~~g~p----~~~v~W~~~~~~~~--~-~~---~~~----~~~~~~~~~~~~------~~~l~i~~~~~~~ 267 (978)
+|++++|.|...... ...|.|++....-. . +. ... .......|+.+. +.+|.|.++ +.+
T Consensus 12 ~G~~vtL~C~~s~~~~~~~~~~v~W~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v-~~~ 90 (116)
T cd05715 12 NGSDVRLKCTFSSSEPISDDISVTWSFQPEGSGDTESIFHYHKGPYYPLKDGRFKDRVEWVGNPSRKDASIVIHNL-QFT 90 (116)
T ss_pred cCCCeEEEeEEeCCCCcCCceEEEEEEecCCCCCcEEEEEEcCCccccccCccccCcEEEecCCcCCeeEEEEeeC-Ccc
Confidence 467799999886432 24699987432100 0 00 000 011112333332 247999998 999
Q ss_pred CCeEEEEEEEeCce
Q psy12060 268 DRGSYHCKASNKFG 281 (978)
Q Consensus 268 d~G~Y~C~a~n~~g 281 (978)
|+|.|.|.+.|..+
T Consensus 91 D~G~Y~C~v~~~~~ 104 (116)
T cd05715 91 DNGTYTCDVKNPPD 104 (116)
T ss_pred cCEEEEEEEEeCCC
Confidence 99999999997654
No 341
>PHA03269 envelope glycoprotein C; Provisional
Probab=97.61 E-value=0.011 Score=61.48 Aligned_cols=197 Identities=17% Similarity=0.208 Sum_probs=111.8
Q ss_pred eEEEeCCCCCCCCeEEEEEEEeCc-ee-EEeEEEEEEEeeecccccCCCCeeeecccCeEEEeCCCCCCCC--ceEEEec
Q psy12060 257 NLIINDPRQVEDRGSYHCKASNKF-GS-IISESVQLAFGFIGEFNLKRAPEIGNQNWGKAMFCDPPTNYPG--VNYYWAR 332 (978)
Q Consensus 257 ~l~i~~~~~~~d~G~Y~C~a~n~~-g~-~~s~~~~l~v~~~~~~~~~~~~~~~~~~~~~~l~C~~~~~~p~--~~i~W~~ 332 (978)
.|.|.++ +..+.|.|.=...+.. |. .....++|++...|.+.+ .+.-+..|+...-.|.+...+|+ ..++|++
T Consensus 290 pL~I~sl-taATeGvY~Wrv~~~~n~t~~~~~~VtV~~yr~PsVsV--~p~PVL~Ge~YkAtC~vA~YYPp~SvrlrWf~ 366 (566)
T PHA03269 290 SLHILSL-DASTEGTYIWRVIHTANKNVINEHHITVMSYKRPNITV--IGDPVLLGNPYAAYCKVNKYYPPHSVIVKWTS 366 (566)
T ss_pred ceEEeec-ccccCceEEEEEecCCCCceeeeeEEEEEEecCCCccc--cCCccccCCCceEEEEeeeecCCCceEEEEEe
Confidence 4888887 8999999986655332 22 234556666655554433 34456678899999999888887 5789999
Q ss_pred ccccccccc-cceEEEeeCCcEE-Eeeeee-ec-cee-----eEEEEEeeccccccc--CCceeEEEccCCCccccccCC
Q psy12060 333 DYFPNFVEE-DKRVFVSYDGALY-FSALEQ-ID-AGN-----YSCNVQSKVSDTGRN--GPFFPLKVFPHSNFQQLKFPN 401 (978)
Q Consensus 333 ~~~~~~~~~-~~~~~~~~~~~L~-i~~~~~-~d-~G~-----Y~C~~~n~~~~~~~~--~~~~~l~V~~~~~~~~~~~~~ 401 (978)
|+.++.... ........+|.+. ++-++. ++ ++. .+|.+.-..+..... +....-.|+..|.+.
T Consensus 367 ng~~V~~~~it~t~~~~~dGlFSrVSTLtlp~~~~~d~~PPsLrCeV~W~RDsVS~tRfnAaatP~VY~~PtIS------ 440 (566)
T PHA03269 367 NFGNIGKNFITDAIKENADGLFSSVSALHIPAQKNADYPPPAIQCNVLWIRDGVSHMKYSAAVTPDVYPFPNVS------ 440 (566)
T ss_pred CCcccCccccccceeecCCCceEEEEEEeccCccccCCCCCCceEEEEEccCCchheecccccCCccccCCeEE------
Confidence 988765311 1112234455332 222322 22 344 599997654332222 222333444443221
Q ss_pred CCCCCCCCCCCCCCcEEEEEEEeecCC--CeeEEEEcCccCCCCceee-----ecccEEEeCCC---CCCCC-eEEEEEE
Q psy12060 402 NFPKTFPEAPKAGDKVRLECVAFGYPV--PSYNWTRRGSPLPRNAYFE-----NFNRILTIPNV---KVEDQ-GEYICRA 470 (978)
Q Consensus 402 ~~~~~~~~~v~~G~~~~l~C~~~g~p~--~~v~W~~~~~~l~~~~~~~-----~~~~~L~i~~~---~~~d~-G~Y~C~a 470 (978)
..+..|+ ..|.+.-.|. ..+.|+.++.......... ...+...|++. +..|. -.|+|++
T Consensus 441 -------m~FedG~---AVCtA~CVP~~~V~l~WlVgD~p~~~~~t~itG~C~ehPGLVNLRS~~pLS~~dgpveYTCrL 510 (566)
T PHA03269 441 -------IEIIDGH---IVCLAKCVPRGVVHFNWWINDIPIEHENSEILGVCDNNKRFVNLQSSCDTSELDGPITYSCHL 510 (566)
T ss_pred -------EEEeCCE---EEEecccccCCCceEEEEecCCCCCCccceeeccCCCCCCceeecccccccccCCceeEEEEE
Confidence 1223444 4466665554 3799999887754332211 22345566663 33332 3899998
Q ss_pred Ee
Q psy12060 471 SN 472 (978)
Q Consensus 471 ~n 472 (978)
..
T Consensus 511 ~G 512 (566)
T PHA03269 511 DG 512 (566)
T ss_pred ee
Confidence 74
No 342
>cd04984 IgV_L_lambda Immunoglobulin (Ig) lambda light chain variable (V) domain. IgV_L_lambda: Immunoglobulin (Ig) light chain, lambda type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.
Probab=97.59 E-value=0.00018 Score=60.76 Aligned_cols=63 Identities=21% Similarity=0.381 Sum_probs=44.4
Q ss_pred CCCCCCcEEEEEEEeec--CCCeeEEEEcCc--cCC------------CCceee----ecccEEEeCCCCCCCCeEEEEE
Q psy12060 410 APKAGDKVRLECVAFGY--PVPSYNWTRRGS--PLP------------RNAYFE----NFNRILTIPNVKVEDQGEYICR 469 (978)
Q Consensus 410 ~v~~G~~~~l~C~~~g~--p~~~v~W~~~~~--~l~------------~~~~~~----~~~~~L~i~~~~~~d~G~Y~C~ 469 (978)
.+.+|++++|.|.+.+. ....+.|||... .+. ...++. .....|.|.+++.+|+|.|.|.
T Consensus 2 ~v~~G~~v~l~C~~~~~~~~~~~i~Wy~q~~g~~~~~l~~~~~~~~~~~~~rf~~~~~~~~~~L~I~~~~~~Dsg~Y~C~ 81 (98)
T cd04984 2 SVSPGETVTITCTGSSGNISGNYVNWYQQKPGSAPRYLIYEDSDRPSGIPDRFSGSKSGNTASLTISGAQTEDEADYYCQ 81 (98)
T ss_pred ccCCCCCEEEEEEEcCCCcCCCCEEEEEECCCCCccEEEEeccccCCCCCCCEEEEccCCEEEEEECCCChhhCEEEEEE
Confidence 35689999999998764 456799998542 110 011121 1234699999999999999999
Q ss_pred EEe
Q psy12060 470 ASN 472 (978)
Q Consensus 470 a~n 472 (978)
+.+
T Consensus 82 ~~~ 84 (98)
T cd04984 82 VWD 84 (98)
T ss_pred Ecc
Confidence 875
No 343
>PHA03270 envelope glycoprotein C; Provisional
Probab=97.58 E-value=0.015 Score=59.83 Aligned_cols=168 Identities=18% Similarity=0.198 Sum_probs=95.9
Q ss_pred cCEEEEEeCCCCCCCeEEEEEEEcCCCceeeEEEEEEEEc-CCccccCCCCcceeecCCCeEEEEEeeccCCCC---eeE
Q psy12060 546 DNVLTIRYLNPERDPAMYQCRAKNQLKTRYSSAQLRVLTL-KPSFKKRPLESETYAGEGGNVTIFCNPEAAPKP---KFV 621 (978)
Q Consensus 546 ~~~l~i~~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~-~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~---~i~ 621 (978)
...|.|..++. ..+|.|+=...+..+.......+.|..+ +|.+.+.+.+ +..|+...-.|.+..+-++ .+.
T Consensus 181 ~~~L~I~slt~-aTeGvY~Wr~~~~~~~~~~~~~VtV~~yr~Psvsv~~~P----vL~Ge~Y~AtC~va~YYPp~Sv~lr 255 (466)
T PHA03270 181 TQRLVIQELTL-ATQGMYYWARGPADRPHRYGTWTRVRMFRRPSLSIRPHA----VLEGEPFGATCVAANYYPGDRAAFR 255 (466)
T ss_pred cceEEEEEccc-ccceEEEEEEecCCCceeeeeEEEEEEecCCcccccCCc----cccCCCceEEEEeeeecCCCceEEE
Confidence 34799999997 8999999987776665444444555444 5665554432 6789999999998776444 799
Q ss_pred EeeCCEEecCCCc----EEEeecCcEEEccccCCCCE------EEEEEEEeCCceeeeeEEEEEEeCCceeeeCCCceEE
Q psy12060 622 WKKDGNIIGSGGR----RKIFENGNLLISPVSRDDSG------IYSCTATNVHGMDESKGRLIVLHGPSYYEQLPPKITI 691 (978)
Q Consensus 622 W~~~g~~~~~~~~----~~~~~~~~l~i~~~~~~d~G------~Y~C~a~n~~g~~~~~~~l~v~~~p~~~~~~~~~~~~ 691 (978)
|++||.++..-.. .....++-..++-++.++.+ ..+|.+.=..+..+.+ .+.-...|.... ++.+.+
T Consensus 256 Wf~ng~~V~~~~~i~~~~~~~~dGfs~vStvtsea~~~~~~PPsLrC~v~W~rd~vS~s-R~nAa~~P~VY~--~P~Isv 332 (466)
T PHA03270 256 WFEGGDEVFAPERVRTRVDAQRDGFSATSTLTSEARAGLAPPRNLTCEFTWHRDSVSFS-RRNATGAPTVLP--RPTIEM 332 (466)
T ss_pred EEeCCccccCcceeeeeeEecCCCeeEEEEEeccccccCCCCCCceEEEEEccCCccce-eecccccCcccc--CCeEEE
Confidence 9999998753211 11122332233333333332 6889886433322111 111111222211 222333
Q ss_pred EccccEEEEEEeeecCCcCeEEEEeeCCEEcc
Q psy12060 692 AAHRNLQLRCSAHTEELLDVAYIWTHNGVRIG 723 (978)
Q Consensus 692 ~~g~~~~l~C~~~~~p~~~~~~~W~~~g~~~~ 723 (978)
..++. ...|++.-.|. .+.+.|.-+.....
T Consensus 333 ~F~dG-~AVCtA~CVPe-gV~l~W~V~D~~~p 362 (466)
T PHA03270 333 EFGGD-EAVCTAACVPE-GVTLAWLLGADPAP 362 (466)
T ss_pred EEeCC-EEEEeccccCC-CCEEEEEecCCCCC
Confidence 22222 23477777764 68899987765543
No 344
>cd05715 Ig_P0-like Immunoglobulin (Ig)-like domain of Protein zero (P0) and similar proteins. Ig_P0ex-like: domain similar to the immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an extracellular Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin. This group also contains the Ig domain of Sodium channel subunit beta-2
Probab=97.57 E-value=0.00034 Score=61.15 Aligned_cols=73 Identities=18% Similarity=0.272 Sum_probs=46.8
Q ss_pred CeeeecccCeEEEeCCCCCCC---CceEEEecccc----ccc-c--------c-cc----ceEEEee-----CCcEEEee
Q psy12060 304 PEIGNQNWGKAMFCDPPTNYP---GVNYYWARDYF----PNF-V--------E-ED----KRVFVSY-----DGALYFSA 357 (978)
Q Consensus 304 ~~~~~~~~~~~l~C~~~~~~p---~~~i~W~~~~~----~~~-~--------~-~~----~~~~~~~-----~~~L~i~~ 357 (978)
...+..|+.++|.|......+ ...+.|++... +.. . . .. .|+.+.. +.+|.|.+
T Consensus 7 ~v~v~~G~~vtL~C~~s~~~~~~~~~~v~W~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~ 86 (116)
T cd05715 7 EVYAVNGSDVRLKCTFSSSEPISDDISVTWSFQPEGSGDTESIFHYHKGPYYPLKDGRFKDRVEWVGNPSRKDASIVIHN 86 (116)
T ss_pred eEEEEcCCCeEEEeEEeCCCCcCCceEEEEEEecCCCCCcEEEEEEcCCccccccCccccCcEEEecCCcCCeeEEEEee
Confidence 345678999999997743322 25699986321 100 0 0 01 2222222 24699999
Q ss_pred eeeecceeeEEEEEeeccc
Q psy12060 358 LEQIDAGNYSCNVQSKVSD 376 (978)
Q Consensus 358 ~~~~d~G~Y~C~~~n~~~~ 376 (978)
++.+|+|.|.|.+.|....
T Consensus 87 v~~~D~G~Y~C~v~~~~~~ 105 (116)
T cd05715 87 LQFTDNGTYTCDVKNPPDI 105 (116)
T ss_pred CCcccCEEEEEEEEeCCCC
Confidence 9999999999999987543
No 345
>cd07694 Ig2_CD4 Second immunoglobulin (Ig) domain of CD4. Ig2_CD4; second immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy.
Probab=97.56 E-value=0.00073 Score=53.13 Aligned_cols=74 Identities=19% Similarity=0.215 Sum_probs=50.5
Q ss_pred eecCCCeEEEEEeeccCCC--CeeEEeeCCEEecCCCcEEEeecCcEEEccccCCCCEEEEEEEEeCCceeeeeEEEEE
Q psy12060 599 YAGEGGNVTIFCNPEAAPK--PKFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTATNVHGMDESKGRLIV 675 (978)
Q Consensus 599 ~~~~g~~~~l~C~~~~~p~--~~i~W~~~g~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v 675 (978)
.+..|++++|+|.....+. +.|+|...+..... .......+|.+..+...|+|.++|.+.-..-.......+.|
T Consensus 10 ~lL~G~sLtLtl~~~s~s~p~~~i~w~~P~n~~~~---~~~~~~ktL~~~qv~~qdSG~WtC~V~~~~k~~~~~~~V~V 85 (88)
T cd07694 10 HVLSGTNLTLTLHGSSNSLPAFKVEWRGPGNKSKQ---ILNQDKKTLNLVQLGPNDSGTWDCIVSVNSSEKTLKLDIKV 85 (88)
T ss_pred eeecCCcEEEEEecCCCCCCCccEEEeCCCCccce---eccCCccEEEeceeCcccCCEEEEEEEECceEEEEEeeEEE
Confidence 3678999999999866444 49999865443211 11123457999999999999999999754333334444444
No 346
>PHA03269 envelope glycoprotein C; Provisional
Probab=97.54 E-value=0.0034 Score=65.17 Aligned_cols=160 Identities=21% Similarity=0.281 Sum_probs=97.6
Q ss_pred cEEEeeeeeecceeeEEEEEeecccccccCCceeEEEccCCCccccccCCCCCCCCCCCCCCCCcEEEEEEEeecCCC--
Q psy12060 352 ALYFSALEQIDAGNYSCNVQSKVSDTGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPEAPKAGDKVRLECVAFGYPVP-- 429 (978)
Q Consensus 352 ~L~i~~~~~~d~G~Y~C~~~n~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~v~~G~~~~l~C~~~g~p~~-- 429 (978)
.|.|.+++..++|.|+=++.+...+.......+.|.+...|.+ .+. +..+.+|+...-.|.+..+-++
T Consensus 290 pL~I~sltaATeGvY~Wrv~~~~n~t~~~~~~VtV~~yr~PsV-sV~---------p~PVL~Ge~YkAtC~vA~YYPp~S 359 (566)
T PHA03269 290 SLHILSLDASTEGTYIWRVIHTANKNVINEHHITVMSYKRPNI-TVI---------GDPVLLGNPYAAYCKVNKYYPPHS 359 (566)
T ss_pred ceEEeecccccCceEEEEEecCCCCceeeeeEEEEEEecCCCc-ccc---------CCccccCCCceEEEEeeeecCCCc
Confidence 4999999999999998776554333334445577887776632 222 2356799999999999864333
Q ss_pred -eeEEEEcCccCCCCce----e-eecc-----cEEEeCCCCCCC--CeEEEEEEEeCCCce-----EEEEEEEEEeecee
Q psy12060 430 -SYNWTRRGSPLPRNAY----F-ENFN-----RILTIPNVKVED--QGEYICRASNDRSAL-----ESSVTISIQAEPNF 491 (978)
Q Consensus 430 -~v~W~~~~~~l~~~~~----~-~~~~-----~~L~i~~~~~~d--~G~Y~C~a~n~~g~~-----~~~~~l~V~~~p~~ 491 (978)
.++|++|+.++..... . ...+ ++|.+......| -=..+|.+.=..+.. ++++.-.|..+|.+
T Consensus 360 vrlrWf~ng~~V~~~~it~t~~~~~dGlFSrVSTLtlp~~~~~d~~PPsLrCeV~W~RDsVS~tRfnAaatP~VY~~PtI 439 (566)
T PHA03269 360 VIVKWTSNFGNIGKNFITDAIKENADGLFSSVSALHIPAQKNADYPPPAIQCNVLWIRDGVSHMKYSAAVTPDVYPFPNV 439 (566)
T ss_pred eEEEEEeCCcccCccccccceeecCCCceEEEEEEeccCccccCCCCCCceEEEEEccCCchheecccccCCccccCCeE
Confidence 6999999999874211 1 1111 234442222222 225699987543322 23444556667766
Q ss_pred eccCCcccccCCCceeEEEEeecCC--CCeeEEeECCEEC
Q psy12060 492 TIPLTDKHMDNQADLTWTCEAFGVP--DVTYSWFRNGELL 529 (978)
Q Consensus 492 ~~~~~~~~~~~g~~~~l~C~~~~~p--~~~i~W~~~g~~~ 529 (978)
++. +..| ...|.+.--| ...+.|+-++...
T Consensus 440 Sm~-----FedG---~AVCtA~CVP~~~V~l~WlVgD~p~ 471 (566)
T PHA03269 440 SIE-----IIDG---HIVCLAKCVPRGVVHFNWWINDIPI 471 (566)
T ss_pred EEE-----EeCC---EEEEecccccCCCceEEEEecCCCC
Confidence 542 2233 3457776555 3589999876653
No 347
>PHA03273 envelope glycoprotein C; Provisional
Probab=97.53 E-value=0.0065 Score=63.11 Aligned_cols=78 Identities=22% Similarity=0.350 Sum_probs=60.4
Q ss_pred cEEEeCCCCCCCCeEEEEEEEeCCCceE--EEEEEEEEeeceeeccCCcccccCCCceeEEEEeecC-C--CCeeEEeEC
Q psy12060 451 RILTIPNVKVEDQGEYICRASNDRSALE--SSVTISIQAEPNFTIPLTDKHMDNQADLTWTCEAFGV-P--DVTYSWFRN 525 (978)
Q Consensus 451 ~~L~i~~~~~~d~G~Y~C~a~n~~g~~~--~~~~l~V~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~-p--~~~i~W~~~ 525 (978)
..|.|..++..++|.|+=...+..+... ..++|....+|.+.+.+. .+.+|+...-.|.+..+ | ...+.|++|
T Consensus 198 ~~LtI~sltaaTeGvYtWr~~~~n~t~~~~~~VtV~~yr~Psvsv~~~--PvL~Ge~y~A~C~aa~YYPp~Sv~~rWf~d 275 (486)
T PHA03273 198 FPLTIKSVDWRTAGVYVWSLYAKNGTLVNSTSVTVSTYNAPLVDLSVH--PSLKGENYRAVCVVASYFPHSSVKLRWYKN 275 (486)
T ss_pred cceEEEecchhhceEEEEEEecCCCceeeeeEEEEEEecCCcccccCC--ccccCCCceEEEEeeeecCCCceEEEEEeC
Confidence 3599999999999999877656555433 445555577888766544 57899999999998765 4 568999999
Q ss_pred CEECC
Q psy12060 526 GELLN 530 (978)
Q Consensus 526 g~~~~ 530 (978)
|.++.
T Consensus 276 g~~V~ 280 (486)
T PHA03273 276 AKEVD 280 (486)
T ss_pred Ceecc
Confidence 99887
No 348
>cd05772 IgC_SIRP Signal-regulatory protein (SIRP) immunoglobulin-like domain. IgC_SIRP: Immunoglobulin-like domain of signal-regulatory proteins (SIRP); the signal-regulatory proteins (SIRP) are Ig-like cell surface receptors detected in hematopoietic and non-hematopoietic cells. While their extracellular domains are similar, SIRP are classified as alpha or beta based on the length of the intracytoplasmic domain. Those having a 110- to 113-amino acid tail are classified as SIRP-alpha, and those having a 5-amino acid tail as SIRP-beta. SIRP-alpha and SIRP-beta molecules are thought to have complementary roles in signal regulation: SIRP-alpha inhibit signalling via their immunoreceptor tyrosine (IT)-based inhibition motifs while SIRP-beta are activating. SIRP-beta lack the cytoplasmic domainof SIRP-alpha, and associate with at least one other transmembrane protein (DAP-12 or KARAP). The IT-based activation motifs within DAP-12's cytoplasmic domain may link SIRP-beta to the activating
Probab=97.53 E-value=0.00082 Score=57.40 Aligned_cols=73 Identities=22% Similarity=0.491 Sum_probs=46.3
Q ss_pred ccccCCCceeEEEEeecC-C-CCeeEEeECCEECCCCCCCC--CCCCcEEEecCEEEEEeCCCCCCCe-EEEEEEEcCCC
Q psy12060 498 KHMDNQADLTWTCEAFGV-P-DVTYSWFRNGELLNSETLPL--EDQDRYFIQDNVLTIRYLNPERDPA-MYQCRAKNQLK 572 (978)
Q Consensus 498 ~~~~~g~~~~l~C~~~~~-p-~~~i~W~~~g~~~~~~~~~~--~~~~~~~~~~~~l~i~~~~~~~d~G-~Y~C~a~n~~g 572 (978)
..+..|+.++|.|.+.|+ | ..+++|+|||+.+....... ...+..+.....|.+... +.|.| .|+|.+.+...
T Consensus 16 ~~~~~g~~~tL~C~a~gF~P~~i~v~W~kng~~~~~~~~~~~p~~d~~ty~~~S~L~~~~~--~~d~~~~ytC~V~H~~l 93 (111)
T cd05772 16 GRANPGQSVNFTCSAHGFSPRDITVKWLKNGNELSAEQPNITPEGDSVSYNVTSTVQVKLT--EDDVHSQVTCEVQHRTL 93 (111)
T ss_pred hccCCCCCEEEEEEEeeEeCCCCEEEEEECCEECcccccceeeCCCCCcEEEEEEEEEECc--cccccCceEEEEEeCCC
Confidence 345678889999999986 5 47999999999986431111 111112223345655543 24544 59999998653
No 349
>PF07686 V-set: Immunoglobulin V-set domain; InterPro: IPR013106 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the V-set domains, which are Ig-like domains resembling the antibody variable domain. V-set domains are found in diverse protein families, including immunoglobulin light and heavy chains; in several T-cell receptors such as CD2 (Cluster of Differentiation 2), CD4, CD80, and CD86; in myelin membrane adhesion molecules; in junction adhesion molecules (JAM); in tyrosine-protein kinase receptors; and in the programmed cell death protein 1 (PD1).; PDB: 1PY9_A 2NXY_D 1U9K_B 3RNK_A 3BP6_A 3BIK_B 3SBW_A 1NPU_A 3BP5_A 3RNQ_A ....
Probab=97.51 E-value=0.00034 Score=61.38 Aligned_cols=76 Identities=24% Similarity=0.441 Sum_probs=50.9
Q ss_pred CCCCCCcEEEEEEEe-ecCCCeeEEEEcCcc-----CC---CC-----------c--eee----ecccEEEeCCCCCCCC
Q psy12060 410 APKAGDKVRLECVAF-GYPVPSYNWTRRGSP-----LP---RN-----------A--YFE----NFNRILTIPNVKVEDQ 463 (978)
Q Consensus 410 ~v~~G~~~~l~C~~~-g~p~~~v~W~~~~~~-----l~---~~-----------~--~~~----~~~~~L~i~~~~~~d~ 463 (978)
.+.+|++++|.|... ......+.|++.... +. .. . .+. ....+|.|.+++.+|+
T Consensus 12 ~~~~G~~v~L~C~~~~~~~~~~v~W~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~i~~l~~~Ds 91 (114)
T PF07686_consen 12 TVQEGESVTLPCSYSSSSNQSSVYWYRQSPGQGPQLIIRYSLSSTNETPTPSYSGRFTFSGNGSQNNFSLTIKNLQPSDS 91 (114)
T ss_dssp EEETTSEEEEEEEEESSSSGSEEEEEEEETTSEEEEEEEEETTEEEEEEETTETTTEEEEEETTTTEEEEEESSESGGGE
T ss_pred EEecCCCEEEEEEEeCCCCcceEEEEEECccccceeeeeeccceeeeccccceeeeeeeeecccCCeEEEEECCCCcCcC
Confidence 456899999999998 445568999994431 11 00 0 001 1134699999999999
Q ss_pred eEEEEEEEeCC-CceEEEEEEEE
Q psy12060 464 GEYICRASNDR-SALESSVTISI 485 (978)
Q Consensus 464 G~Y~C~a~n~~-g~~~~~~~l~V 485 (978)
|.|.|.+.... ......+.|.|
T Consensus 92 G~Y~C~v~~~~~~~~~~~~~L~V 114 (114)
T PF07686_consen 92 GTYFCQVSTSNEQSFGNGTKLTV 114 (114)
T ss_dssp EEEEEEEEESSEEEEEEEEEEEE
T ss_pred EEEEEEEEECCCCEECCcEEEEC
Confidence 99999999862 23344455554
No 350
>cd04980 IgV_L_kappa Immunoglobulin (Ig) light chain, kappa type, variable (V) domain. IgV_L_kappa: Immunoglobulin (Ig) light chain, kappa type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.
Probab=97.48 E-value=0.00039 Score=59.74 Aligned_cols=67 Identities=21% Similarity=0.351 Sum_probs=46.3
Q ss_pred ceeecCCCeEEEEEeeccCC-CCeeEEeeCC--EE---ec---------CCCcEEEeecC---cEEEccccCCCCEEEEE
Q psy12060 597 ETYAGEGGNVTIFCNPEAAP-KPKFVWKKDG--NI---IG---------SGGRRKIFENG---NLLISPVSRDDSGIYSC 658 (978)
Q Consensus 597 ~~~~~~g~~~~l~C~~~~~p-~~~i~W~~~g--~~---~~---------~~~~~~~~~~~---~l~i~~~~~~d~G~Y~C 658 (978)
...+.+|++++|.|.+.+.. ...+.|+|.. .. +. ...++.....+ .|.|.+++.+|+|.|.|
T Consensus 9 ~~~v~~G~~v~L~C~~~~~~~~~~~~Wyrq~~g~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~~~~~Dsg~Y~C 88 (106)
T cd04980 9 TLSVSPGESATISCKASQSVSSNYLAWYQQKPGQAPKLLIYGASTLASGTPSRFSGSGSGTDFTLTISRVEPEDAAVYYC 88 (106)
T ss_pred cEEECCCCCEEEEEEECCCCCCCcEEEEEECCCCCcEEEEECccccCCCCCCCEEEeccCCEEEEEECCCChHHCEEEEE
Confidence 34578999999999987665 5689999732 11 11 01233332222 49999999999999999
Q ss_pred EEEeC
Q psy12060 659 TATNV 663 (978)
Q Consensus 659 ~a~n~ 663 (978)
.+.+.
T Consensus 89 a~~~~ 93 (106)
T cd04980 89 QQYGT 93 (106)
T ss_pred EEeCC
Confidence 98653
No 351
>PHA03270 envelope glycoprotein C; Provisional
Probab=97.48 E-value=0.0044 Score=63.57 Aligned_cols=161 Identities=17% Similarity=0.308 Sum_probs=98.3
Q ss_pred CcEEEeeeeeecceeeEEEEEeecccccccCCceeEEEccCCCccccccCCCCCCCCCCCCCCCCcEEEEEEEeecCCC-
Q psy12060 351 GALYFSALEQIDAGNYSCNVQSKVSDTGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPEAPKAGDKVRLECVAFGYPVP- 429 (978)
Q Consensus 351 ~~L~i~~~~~~d~G~Y~C~~~n~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~v~~G~~~~l~C~~~g~p~~- 429 (978)
..|.|..++...+|.|+=+.-+..+. ......++|..+.+|.+. +. +..+.+|+...-.|.+..+-++
T Consensus 182 ~~L~I~slt~aTeGvY~Wr~~~~~~~-~~~~~~VtV~~yr~Psvs-v~---------~~PvL~Ge~Y~AtC~va~YYPp~ 250 (466)
T PHA03270 182 QRLVIQELTLATQGMYYWARGPADRP-HRYGTWTRVRMFRRPSLS-IR---------PHAVLEGEPFGATCVAANYYPGD 250 (466)
T ss_pred ceEEEEEcccccceEEEEEEecCCCc-eeeeeEEEEEEecCCccc-cc---------CCccccCCCceEEEEeeeecCCC
Confidence 45999999999999999997776542 233344777777666532 22 2356799999999999864333
Q ss_pred --eeEEEEcCccCCCCceee-----ecc-----cEEEeCCCCCC-CCeEEEEEEEeCCCce-----EEEEEEEEEeecee
Q psy12060 430 --SYNWTRRGSPLPRNAYFE-----NFN-----RILTIPNVKVE-DQGEYICRASNDRSAL-----ESSVTISIQAEPNF 491 (978)
Q Consensus 430 --~v~W~~~~~~l~~~~~~~-----~~~-----~~L~i~~~~~~-d~G~Y~C~a~n~~g~~-----~~~~~l~V~~~p~~ 491 (978)
.+.||+|+.++....... ..+ ++|++...... .-=..+|.+.=..+.. ++++.-.|..+|.+
T Consensus 251 Sv~lrWf~ng~~V~~~~~i~~~~~~~~dGfs~vStvtsea~~~~~~PPsLrC~v~W~rd~vS~sR~nAa~~P~VY~~P~I 330 (466)
T PHA03270 251 RAAFRWFEGGDEVFAPERVRTRVDAQRDGFSATSTLTSEARAGLAPPRNLTCEFTWHRDSVSFSRRNATGAPTVLPRPTI 330 (466)
T ss_pred ceEEEEEeCCccccCcceeeeeeEecCCCeeEEEEEeccccccCCCCCCceEEEEEccCCccceeecccccCccccCCeE
Confidence 699999999885422211 111 23333332211 1127899987433322 23344556667766
Q ss_pred eccCCcccccCCCceeEEEEeecCC-CCeeEEeECCEECC
Q psy12060 492 TIPLTDKHMDNQADLTWTCEAFGVP-DVTYSWFRNGELLN 530 (978)
Q Consensus 492 ~~~~~~~~~~~g~~~~l~C~~~~~p-~~~i~W~~~g~~~~ 530 (978)
++. +..| ...|++.--| ...+.|+-++....
T Consensus 331 sv~-----F~dG---~AVCtA~CVPegV~l~W~V~D~~~p 362 (466)
T PHA03270 331 EME-----FGGD---EAVCTAACVPEGVTLAWLLGADPAP 362 (466)
T ss_pred EEE-----EeCC---EEEEeccccCCCCEEEEEecCCCCC
Confidence 542 2233 2457665444 67899998766554
No 352
>PF08205 C2-set_2: CD80-like C2-set immunoglobulin domain ; InterPro: IPR013162 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the C2-set type domains found in the T-cell antigen CD80, as well as in related proteins. CD80 (B7-1) is a glycoprotein expressed on antigen-presenting cells []. The shared ligands on CD80 and CD86 (B7-2) deliver the co-stimulatory signal through CD28 and CTLA-4 on T-cells, where CD28 augments the T-cell response and CTLA-4 attenuates it [].; PDB: 3S58_A 3O3U_N 3CJJ_A 3S59_A 2PF6_B 2PET_A 3ALP_A 3SKU_D 3U83_A 3U82_B ....
Probab=97.46 E-value=0.00037 Score=57.65 Aligned_cols=71 Identities=20% Similarity=0.390 Sum_probs=44.2
Q ss_pred cCcEEEEEEe-ecCCCCeEEEEEcccccccccccccCCCCCCceEeecceEEEeCCCCCCCCeEEEEEEEeCce
Q psy12060 209 LNDITLSCYA-GGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVEDRGSYHCKASNKFG 281 (978)
Q Consensus 209 g~~~~l~C~~-~g~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~d~G~Y~C~a~n~~g 281 (978)
|+.+.|+|.+ .|+|+|.|+|+.++..+...............+ .....|.+... +.++...++|.|.+..-
T Consensus 14 ~~~~~~~C~s~~~~P~~~i~W~~~~~~~~~~~~~~~~~~~~~~~-~~~S~l~~~~~-~~~~~~~~~C~~~~~~~ 85 (89)
T PF08205_consen 14 GEEVTLTCSSSGGYPPPQITWYLDGGPVVASNTTQSSSPDNGLF-TVSSTLTLTPT-REDHGKTLTCRASHPAL 85 (89)
T ss_dssp TEEEEEEEEEEEEBS-EEEEEEETTCEECEEEEEEEEETTTTTE-EEEEEEEEETT-GGGTTEEEEEEEEETTC
T ss_pred ceEEEEEEEeCCeECCeEEEEEECCCceeeeeeeeeeccCCCcc-eEEEEEEEEcC-hHHCCeEEEEEEECCcc
Confidence 4569999987 589999999999997651111111111111222 22345666654 56788899999998753
No 353
>cd05772 IgC_SIRP Signal-regulatory protein (SIRP) immunoglobulin-like domain. IgC_SIRP: Immunoglobulin-like domain of signal-regulatory proteins (SIRP); the signal-regulatory proteins (SIRP) are Ig-like cell surface receptors detected in hematopoietic and non-hematopoietic cells. While their extracellular domains are similar, SIRP are classified as alpha or beta based on the length of the intracytoplasmic domain. Those having a 110- to 113-amino acid tail are classified as SIRP-alpha, and those having a 5-amino acid tail as SIRP-beta. SIRP-alpha and SIRP-beta molecules are thought to have complementary roles in signal regulation: SIRP-alpha inhibit signalling via their immunoreceptor tyrosine (IT)-based inhibition motifs while SIRP-beta are activating. SIRP-beta lack the cytoplasmic domainof SIRP-alpha, and associate with at least one other transmembrane protein (DAP-12 or KARAP). The IT-based activation motifs within DAP-12's cytoplasmic domain may link SIRP-beta to the activating
Probab=97.45 E-value=0.00082 Score=57.42 Aligned_cols=83 Identities=18% Similarity=0.230 Sum_probs=51.5
Q ss_pred EeCCceeeeCCCceEEEccccEEEEEEeeecCCcCeEEEEeeCCEEccccccccccCCeeecCC------ceEEEeccCC
Q psy12060 676 LHGPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDG------GLLEITNASF 749 (978)
Q Consensus 676 ~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~~~W~~~g~~~~~~~~~~~~~~~~~~~~------~~l~i~~~~~ 749 (978)
..+|.......+......|+.++|.|.+.+.-++.+.++|++||..+..... ......++ +.|.+.. ..
T Consensus 3 ~~~P~~p~i~~~~~~~~~g~~~tL~C~a~gF~P~~i~v~W~kng~~~~~~~~----~~~p~~d~~ty~~~S~L~~~~-~~ 77 (111)
T cd05772 3 RAKPSVPVVSGPSGRANPGQSVNFTCSAHGFSPRDITVKWLKNGNELSAEQP----NITPEGDSVSYNVTSTVQVKL-TE 77 (111)
T ss_pred ccCCCCcEeCCchhccCCCCCEEEEEEEeeEeCCCCEEEEEECCEECccccc----ceeeCCCCCcEEEEEEEEEEC-cc
Confidence 3455544444444445578889999999998888899999999999854211 01111121 2344442 33
Q ss_pred CCCE-EEEEEEEcCC
Q psy12060 750 ADAG-EYECVVKSTV 763 (978)
Q Consensus 750 ~d~g-~Y~c~a~n~~ 763 (978)
.|.+ .|+|.+....
T Consensus 78 ~d~~~~ytC~V~H~~ 92 (111)
T cd05772 78 DDVHSQVTCEVQHRT 92 (111)
T ss_pred ccccCceEEEEEeCC
Confidence 3433 5999997754
No 354
>smart00407 IGc1 Immunoglobulin C-Type.
Probab=97.44 E-value=0.00066 Score=53.68 Aligned_cols=67 Identities=19% Similarity=0.379 Sum_probs=40.6
Q ss_pred EEEEEEeecC-CC-CeEEEEEccccccc-ccccccCCCCCCceEeecceEEEeCCCCCCCCeEEEEEEEeCc
Q psy12060 212 ITLSCYAGGY-PN-PSYEWFKEDYVQDR-LVANLIDPLSDKRFTLSGGNLIINDPRQVEDRGSYHCKASNKF 280 (978)
Q Consensus 212 ~~l~C~~~g~-p~-~~v~W~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~d~G~Y~C~a~n~~ 280 (978)
++|.|.+.|. |. ..|+|+|||+++.. .......+..+..+.. ...|.|... ..++...|+|++.+..
T Consensus 2 ~~L~C~a~gf~P~~i~v~W~k~g~~~~~~~~~~~~~~~~~gt~~~-~s~L~v~~~-~~~~~~~~tC~V~H~~ 71 (75)
T smart00407 2 ATLVCLVSGFYPPDITVTWLRNGQEVTSGVSTTDPLKNSDGTYFL-SSYLTVSAS-TWESGDTYTCQVTHEG 71 (75)
T ss_pred eEEEEEEEeEeCCCCEEEEEECCEECCCCEEECceEECCCCCEEE-EEEEEEccc-cCCCCCEEEEEEEEcC
Confidence 7899999874 55 69999999975321 1111111112233322 234555443 5577889999998753
No 355
>cd04982 IgV_TCR_gamma Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) gamma chain. IgV_TCR_gamma: immunoglobulin (Ig) variable (V) domain of the gamma chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is
Probab=97.42 E-value=0.00057 Score=59.92 Aligned_cols=67 Identities=19% Similarity=0.360 Sum_probs=48.0
Q ss_pred cceeecCCCeEEEEEeecc--CCCCeeEEeeC--CEEe------c-----------CCCcEEEeec-----CcEEEcccc
Q psy12060 596 SETYAGEGGNVTIFCNPEA--APKPKFVWKKD--GNII------G-----------SGGRRKIFEN-----GNLLISPVS 649 (978)
Q Consensus 596 ~~~~~~~g~~~~l~C~~~~--~p~~~i~W~~~--g~~~------~-----------~~~~~~~~~~-----~~l~i~~~~ 649 (978)
..+.+.+|++++|.|.+.+ .+.+.+.|++. |..+ . ...++.+..+ ..|+|.+++
T Consensus 6 ~~~~~~~G~~v~l~C~~~~~~~~~~~v~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~~~ 85 (116)
T cd04982 6 LSITREESKSVTISCKVSGIDFSTTYIHWYRQKPGQALERLLYVSSTSTQRKLSGGTKNKFEARKDVGKSTSTLTIQNLE 85 (116)
T ss_pred CeEEeCCCCCEEEEEEEeCCCccccEEEEEEECCCCCCEEEEEEecCCCcEEeCcccCCCEEEEEECCCCEEEEEEEECC
Confidence 4455789999999999877 56778999984 2110 0 1234444322 249999999
Q ss_pred CCCCEEEEEEEEe
Q psy12060 650 RDDSGIYSCTATN 662 (978)
Q Consensus 650 ~~d~G~Y~C~a~n 662 (978)
.+|+|.|.|.+..
T Consensus 86 ~~Dsg~Y~C~~~~ 98 (116)
T cd04982 86 KEDSATYYCAYWE 98 (116)
T ss_pred HHHCEEEEEEEec
Confidence 9999999999864
No 356
>cd07700 IgV_CD8_beta Immunoglobulin (Ig) like domain of CD8 beta chain. IgV_CD8_beta: immunoglobulin (Ig)-like domain in CD8 beta. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alpha/alpha or alpha/beta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a V-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain.
Probab=97.39 E-value=0.00072 Score=58.05 Aligned_cols=71 Identities=25% Similarity=0.422 Sum_probs=43.3
Q ss_pred cccCcEEEEEEeecC-CCCeEEEEEccccc--cccccc---------ccCC-CCCCceEe--e----cceEEEeCCCCCC
Q psy12060 207 SILNDITLSCYAGGY-PNPSYEWFKEDYVQ--DRLVAN---------LIDP-LSDKRFTL--S----GGNLIINDPRQVE 267 (978)
Q Consensus 207 ~~g~~~~l~C~~~g~-p~~~v~W~~~~~~~--~~~~~~---------~~~~-~~~~~~~~--~----~~~l~i~~~~~~~ 267 (978)
++|++|+|+|.+.+. ....+.|||..... ..+... .... ....++.. . ...|.|.++ +.+
T Consensus 4 ~~G~~vtL~C~~~~~~~~~~~~Wyrq~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~I~~~-~~~ 82 (107)
T cd07700 4 QTNNTVKLSCEAKGISENTRIYWLRWRQAPKDSHFEFLALWSPLGGATYGEEVSQEKFSIRVTSDSSRYRLHINRV-KPE 82 (107)
T ss_pred cCCCCEEEEEEEecCCCCCeEEEEEECCCCCCCccEEEEEEcCCCCeEEccccccCcEEEEEECCCCEEEEEECCC-CHH
Confidence 458889999998764 34589999975321 110000 0000 01234432 1 125899897 999
Q ss_pred CCeEEEEEEEe
Q psy12060 268 DRGSYHCKASN 278 (978)
Q Consensus 268 d~G~Y~C~a~n 278 (978)
|+|.|.|...+
T Consensus 83 Dsg~YyCa~~~ 93 (107)
T cd07700 83 DSGTYFCMTVG 93 (107)
T ss_pred HCEEEEEeEcC
Confidence 99999999864
No 357
>cd05889 Ig1_DNAM-1_like First immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226) and similar proteins. Ig1_DNAM-1_like: domain similar to the first immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226). DNAM-1 is a transmembrane protein having two Ig-like domains. It is an adhesion molecule which plays a part in tumor-directed cytotoxicity and adhesion in natural killer (NK) cells and T lymphocytes. It has been shown to regulate the NK cell killing of several tumor types, including myeloma cells and ovarian carcinoma cells. DNAM-1 interacts specifically with poliovirus receptor (PVR; CD155) and nectin -2 (CD211), other members of the Ig superfamily. DNAM-1 is expressed in most peripheral T cells, NK cells, monocytes and a subset of B lymphocytes.
Probab=97.39 E-value=0.00065 Score=56.12 Aligned_cols=63 Identities=19% Similarity=0.224 Sum_probs=42.2
Q ss_pred cCeEEEeCCCCCCCCceEEEecccc----ccc-----------ccccceEEEe----eCCcEEEeeeeeecceeeEEEEE
Q psy12060 311 WGKAMFCDPPTNYPGVNYYWARDYF----PNF-----------VEEDKRVFVS----YDGALYFSALEQIDAGNYSCNVQ 371 (978)
Q Consensus 311 ~~~~l~C~~~~~~p~~~i~W~~~~~----~~~-----------~~~~~~~~~~----~~~~L~i~~~~~~d~G~Y~C~~~ 371 (978)
++++|.|..+......++.|.|... .+. ..-.+|+... .+++|.|.+++.+|+|.|+|.+.
T Consensus 1 ~~vtL~C~~~~~~~~~qV~W~k~~~~~~~~iavy~~~~g~~~~~~y~~Rv~f~~~~~~d~sI~i~nvt~~D~G~Y~C~~~ 80 (96)
T cd05889 1 EKMKLECVYPKTGVLIQVSWTKHNGSHKENIAVYHPIYGMHIEDKYRGRVYFLNSTREDMSLSFNNATEEDVGLYCCSLV 80 (96)
T ss_pred CCEEEEeEcCCCCcEEEEEEEEcCCCCCceEEEEECCCCCEECccccCeEEEecCCCCccEEEEcCCCcccCEEEEEEEE
Confidence 3678999875433456788988532 110 0112344443 24689999999999999999997
Q ss_pred ee
Q psy12060 372 SK 373 (978)
Q Consensus 372 n~ 373 (978)
..
T Consensus 81 t~ 82 (96)
T cd05889 81 TY 82 (96)
T ss_pred eC
Confidence 64
No 358
>cd05716 Ig_pIgR Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR). Ig_pIgR: Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR). pIgR delivers dimeric IgA and pentameric IgM to mucosal secretions. Polymeric immunoglobulin (pIgs) are the first defense against pathogens and toxins. IgA and IgM can form polymers via an 18-residue extension at their c-termini referred to as the tailpiece. pIgR transports pIgs across mucosal epithelia into mucosal secretions. Human pIgR is a glycosylated type I transmembrane protein, comprised of a 620 residue extracellular region, a 23 residue transmembrane region, and a 103 residue cytoplasmic tail. The extracellular region contains five domains that share sequence similarity with Ig variable (v) regions.
Probab=97.37 E-value=0.00068 Score=57.29 Aligned_cols=73 Identities=18% Similarity=0.229 Sum_probs=46.1
Q ss_pred cccCcEEEEEEeec-CCCCeEEEEEccccccc--cc-ccccCCCCCCceEee------cceEEEeCCCCCCCCeEEEEEE
Q psy12060 207 SILNDITLSCYAGG-YPNPSYEWFKEDYVQDR--LV-ANLIDPLSDKRFTLS------GGNLIINDPRQVEDRGSYHCKA 276 (978)
Q Consensus 207 ~~g~~~~l~C~~~g-~p~~~v~W~~~~~~~~~--~~-~~~~~~~~~~~~~~~------~~~l~i~~~~~~~d~G~Y~C~a 276 (978)
.+|++|+|.|.... .+...+.|+|....... +. .....+....|+.+. .-+|.|.++ +.+|+|.|.|.+
T Consensus 5 ~~G~~vtl~C~~~~~~~~~~~~W~r~~~~~~~~~l~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v-~~~DsG~Y~C~~ 83 (98)
T cd05716 5 ELGGSVTIPCPYPPKNRSYEKYWCKWGSAGCCLIIVSEGSVQSQYEGRVSLTDDPDNGVFTVTLNQL-RKEDAGWYWCGV 83 (98)
T ss_pred EeCCeEEEEeeCCCCCCCcEeEeECCCCCCCCeEEECCCccccccCCCEEEEecCCCCEEEEEEcCC-CHHHCEEEEEEc
Confidence 45888999999864 35568999997532110 00 000011223444432 126889897 999999999999
Q ss_pred EeCc
Q psy12060 277 SNKF 280 (978)
Q Consensus 277 ~n~~ 280 (978)
....
T Consensus 84 ~~~~ 87 (98)
T cd05716 84 GDDG 87 (98)
T ss_pred ccCC
Confidence 8654
No 359
>cd00096 Ig Immunoglobulin domain. Ig: immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of this group are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as, T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as, butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=97.36 E-value=0.00083 Score=52.66 Aligned_cols=58 Identities=43% Similarity=0.751 Sum_probs=45.6
Q ss_pred EEEEEEEeecCCCeeEEEEcCccCCCCc--------eeeecccEEEeCCCCCCCCeEEEEEEEeCC
Q psy12060 417 VRLECVAFGYPVPSYNWTRRGSPLPRNA--------YFENFNRILTIPNVKVEDQGEYICRASNDR 474 (978)
Q Consensus 417 ~~l~C~~~g~p~~~v~W~~~~~~l~~~~--------~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~ 474 (978)
++|.|.+.+.+...+.|++++....... ........|.|.++..+|.|.|.|.+.+..
T Consensus 1 ~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~ 66 (74)
T cd00096 1 VTLTCLASGPPPPTITWLKNGKPLPSSVLTRVRSSRGTSSGSSTLTISNVTLEDSGTYTCVASNSA 66 (74)
T ss_pred CEEEEEecCCCCCcEEEEECCEECCCcccEEeccccCcceeEEEEEECccCcccCcEEEEEEecCc
Confidence 4789999887777999999887764332 122345679999999999999999998865
No 360
>cd05716 Ig_pIgR Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR). Ig_pIgR: Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR). pIgR delivers dimeric IgA and pentameric IgM to mucosal secretions. Polymeric immunoglobulin (pIgs) are the first defense against pathogens and toxins. IgA and IgM can form polymers via an 18-residue extension at their c-termini referred to as the tailpiece. pIgR transports pIgs across mucosal epithelia into mucosal secretions. Human pIgR is a glycosylated type I transmembrane protein, comprised of a 620 residue extracellular region, a 23 residue transmembrane region, and a 103 residue cytoplasmic tail. The extracellular region contains five domains that share sequence similarity with Ig variable (v) regions.
Probab=97.35 E-value=0.00029 Score=59.58 Aligned_cols=65 Identities=22% Similarity=0.292 Sum_probs=45.2
Q ss_pred CCCCCCcEEEEEEEee-cCCCeeEEEEcCccC-------------CCCceee------ecccEEEeCCCCCCCCeEEEEE
Q psy12060 410 APKAGDKVRLECVAFG-YPVPSYNWTRRGSPL-------------PRNAYFE------NFNRILTIPNVKVEDQGEYICR 469 (978)
Q Consensus 410 ~v~~G~~~~l~C~~~g-~p~~~v~W~~~~~~l-------------~~~~~~~------~~~~~L~i~~~~~~d~G~Y~C~ 469 (978)
.+.+|++++|.|.... .....+.|+|..... ....+.. .....|.|.+++.+|+|.|.|.
T Consensus 3 ~~~~G~~vtl~C~~~~~~~~~~~~W~r~~~~~~~~~l~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~ 82 (98)
T cd05716 3 TGELGGSVTIPCPYPPKNRSYEKYWCKWGSAGCCLIIVSEGSVQSQYEGRVSLTDDPDNGVFTVTLNQLRKEDAGWYWCG 82 (98)
T ss_pred EEEeCCeEEEEeeCCCCCCCcEeEeECCCCCCCCeEEECCCccccccCCCEEEEecCCCCEEEEEEcCCCHHHCEEEEEE
Confidence 3468999999998764 345679999965321 0011111 1234799999999999999999
Q ss_pred EEeCC
Q psy12060 470 ASNDR 474 (978)
Q Consensus 470 a~n~~ 474 (978)
+....
T Consensus 83 ~~~~~ 87 (98)
T cd05716 83 VGDDG 87 (98)
T ss_pred cccCC
Confidence 87653
No 361
>cd07699 IgC_L Immunoglobulin Constant domain. IgC_L: Immunoglobulin (Ig) light chain constant (C) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.
Probab=97.35 E-value=0.0008 Score=56.60 Aligned_cols=75 Identities=16% Similarity=0.299 Sum_probs=46.8
Q ss_pred CCcccccCCCceeEEEEeecC-C-CCeeEEeECCEECCCCCC----CCCCCCcEEEecCEEEEEeCCCCCCCeEEEEEEE
Q psy12060 495 LTDKHMDNQADLTWTCEAFGV-P-DVTYSWFRNGELLNSETL----PLEDQDRYFIQDNVLTIRYLNPERDPAMYQCRAK 568 (978)
Q Consensus 495 ~~~~~~~~g~~~~l~C~~~~~-p-~~~i~W~~~g~~~~~~~~----~~~~~~~~~~~~~~l~i~~~~~~~d~G~Y~C~a~ 568 (978)
+.......++.++|.|.+.|+ | ...|+|++||+.+..... .....+.|. ....|.+..-. .++...|+|.+.
T Consensus 9 p~~~~~~~~~~~~L~C~~~gfyP~~i~v~W~~~g~~~~~~~~~~~~~~~~dgty~-~~s~L~v~~~~-w~~~~~~sC~V~ 86 (100)
T cd07699 9 PSSEELEKSGKATLVCLINDFYPGFATVQWKVDGATVSSGVQTSTTEQQSDNTYS-LSSYLTLTKSD-WNKHKVYTCEVT 86 (100)
T ss_pred CCHHHHccCCCcEEEEEEEeEECCCCEEEEEECCEECcccEeccccEECCCCCEE-EEEEEEEcHHH-hCCCCeEEEEEE
Confidence 333445567889999999985 5 789999999999853311 011122222 22345554332 134679999998
Q ss_pred cCC
Q psy12060 569 NQL 571 (978)
Q Consensus 569 n~~ 571 (978)
+..
T Consensus 87 H~~ 89 (100)
T cd07699 87 HEG 89 (100)
T ss_pred ecC
Confidence 764
No 362
>cd07706 IgV_TCR_delta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) delta chain. IgV_TCR_delta: immunoglobulin (Ig) variable (V) domain of the delta chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is
Probab=97.34 E-value=0.0017 Score=56.91 Aligned_cols=71 Identities=23% Similarity=0.379 Sum_probs=44.8
Q ss_pred cccCcEEEEEEeecC-CCCeEEEEEccc--ccccccc--cccCCCCCCceEee------cceEEEeCCCCCCCCeEEEEE
Q psy12060 207 SILNDITLSCYAGGY-PNPSYEWFKEDY--VQDRLVA--NLIDPLSDKRFTLS------GGNLIINDPRQVEDRGSYHCK 275 (978)
Q Consensus 207 ~~g~~~~l~C~~~g~-p~~~v~W~~~~~--~~~~~~~--~~~~~~~~~~~~~~------~~~l~i~~~~~~~d~G~Y~C~ 275 (978)
.+|++|+|+|..... ....+.|||... ...-+.. .......+.|+... .-+|.|.++ +.+|+|.|.|.
T Consensus 12 ~~G~~v~L~C~~~~~~~~~~v~Wyrq~~~~~~~~l~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~~-~~~Dsg~Y~C~ 90 (116)
T cd07706 12 QVGEEVTLNCRYETSWTNYYIFWYKQLPSGEMTFLIRQKSIYGNATKGRYSVNFQKAQKSISLTISAL-QLEDSAKYFCA 90 (116)
T ss_pred cCCCCEEEEEEEeCCCCceEEEEEEECCCCceEEEEEecCccCCccCCeEEEEEeccCCEEEEEECCC-CHHHCEEEEEE
Confidence 357779999998753 456899999532 1111100 00111223455542 236899897 99999999999
Q ss_pred EEe
Q psy12060 276 ASN 278 (978)
Q Consensus 276 a~n 278 (978)
+..
T Consensus 91 ~~~ 93 (116)
T cd07706 91 LST 93 (116)
T ss_pred EEC
Confidence 985
No 363
>cd05889 Ig1_DNAM-1_like First immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226) and similar proteins. Ig1_DNAM-1_like: domain similar to the first immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226). DNAM-1 is a transmembrane protein having two Ig-like domains. It is an adhesion molecule which plays a part in tumor-directed cytotoxicity and adhesion in natural killer (NK) cells and T lymphocytes. It has been shown to regulate the NK cell killing of several tumor types, including myeloma cells and ovarian carcinoma cells. DNAM-1 interacts specifically with poliovirus receptor (PVR; CD155) and nectin -2 (CD211), other members of the Ig superfamily. DNAM-1 is expressed in most peripheral T cells, NK cells, monocytes and a subset of B lymphocytes.
Probab=97.33 E-value=0.0018 Score=53.52 Aligned_cols=71 Identities=21% Similarity=0.210 Sum_probs=44.3
Q ss_pred cEEEEEEeec-CCCCeEEEEEcccc----cccc---cccccCCCCCCceEee-----cceEEEeCCCCCCCCeEEEEEEE
Q psy12060 211 DITLSCYAGG-YPNPSYEWFKEDYV----QDRL---VANLIDPLSDKRFTLS-----GGNLIINDPRQVEDRGSYHCKAS 277 (978)
Q Consensus 211 ~~~l~C~~~g-~p~~~v~W~~~~~~----~~~~---~~~~~~~~~~~~~~~~-----~~~l~i~~~~~~~d~G~Y~C~a~ 277 (978)
+++|.|.... ....+|+|.|-+.. +... ....+......|.... +.+|.|.++ +.+|+|.|+|.+.
T Consensus 2 ~vtL~C~~~~~~~~~qV~W~k~~~~~~~~iavy~~~~g~~~~~~y~~Rv~f~~~~~~d~sI~i~nv-t~~D~G~Y~C~~~ 80 (96)
T cd05889 2 KMKLECVYPKTGVLIQVSWTKHNGSHKENIAVYHPIYGMHIEDKYRGRVYFLNSTREDMSLSFNNA-TEEDVGLYCCSLV 80 (96)
T ss_pred CEEEEeEcCCCCcEEEEEEEEcCCCCCceEEEEECCCCCEECccccCeEEEecCCCCccEEEEcCC-CcccCEEEEEEEE
Confidence 4899999752 23468999996431 1100 0111222223454432 478999998 9999999999997
Q ss_pred eC-cee
Q psy12060 278 NK-FGS 282 (978)
Q Consensus 278 n~-~g~ 282 (978)
.- .|+
T Consensus 81 t~P~g~ 86 (96)
T cd05889 81 TYPQGS 86 (96)
T ss_pred eCCCCC
Confidence 54 454
No 364
>cd05770 IgC_beta2m Class I major histocompatibility complex (MHC) beta2-microglobulin. IgC_beta2m: Immunoglobulin-like domain in beta2-Microglobulin (beta2m). Beta2m is the non-covalently bound light chain of the human class I major histocompatibility complex (MHC-I). Beta2m is structured as a beta-sandwich domain composed of two facing beta-sheets (four stranded and three stranded), that is typical of the C-type immunoglobulin superfamily. This structure is stabilized by an intramolecular disulfide bridge connecting two Cys residues in the facing beta -sheets. In vivo, MHC-I continuously exposes beta2m on the cell surface, where it may be released to plasmatic fluids, transported to the kidneys, degraded and then excreted.
Probab=97.31 E-value=0.0021 Score=52.77 Aligned_cols=66 Identities=17% Similarity=0.240 Sum_probs=41.0
Q ss_pred cCcEEEEEEeec-CCC-CeEEEEEcccccccccccccCCCCCCceEeecceEEEeCCCCCCCCeEEEEEEEeC
Q psy12060 209 LNDITLSCYAGG-YPN-PSYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVEDRGSYHCKASNK 279 (978)
Q Consensus 209 g~~~~l~C~~~g-~p~-~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~d~G~Y~C~a~n~ 279 (978)
|+..+|.|.|.| .|. ..++|+|||.++.......+.+..+..+... ..|.+ ...+...|.|++...
T Consensus 15 g~~~~L~C~a~gFyP~~i~v~W~~dg~~~~~~~~~~~~p~~d~tyq~~-s~l~~----~~~~~~~ysC~V~H~ 82 (93)
T cd05770 15 GKPNVLNCYVTGFHPPDIEIRLLKNGVKIPKVEQSDLSFSKDWTFYLL-KSTEF----TPTKGDEYACRVRHN 82 (93)
T ss_pred CCceEEEEEEEEEeCCCCEEEEEECCEECCCcEECcEEECCCCCEEEE-EEEEE----CCCCCCeEEEEEEEC
Confidence 555799999998 453 5899999998764222222223333333321 12333 456788899999875
No 365
>cd00096 Ig Immunoglobulin domain. Ig: immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of this group are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as, T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as, butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=97.29 E-value=0.00064 Score=53.32 Aligned_cols=66 Identities=32% Similarity=0.545 Sum_probs=43.8
Q ss_pred EEEEEEeecCCCCeEEEEEcccccccccccccCCCCCCceEeecceEEEeCCCCCCCCeEEEEEEEeCc
Q psy12060 212 ITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVEDRGSYHCKASNKF 280 (978)
Q Consensus 212 ~~l~C~~~g~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~d~G~Y~C~a~n~~ 280 (978)
+.|.|.+.+.+...+.|++++......... ..............|.|.+. +.+|.|.|.|.+.+..
T Consensus 1 ~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~i~~~-~~~d~g~y~C~~~~~~ 66 (74)
T cd00096 1 VTLTCLASGPPPPTITWLKNGKPLPSSVLT--RVRSSRGTSSGSSTLTISNV-TLEDSGTYTCVASNSA 66 (74)
T ss_pred CEEEEEecCCCCCcEEEEECCEECCCcccE--EeccccCcceeEEEEEECcc-CcccCcEEEEEEecCc
Confidence 479999998778899999987643211100 00011112223456888886 7899999999998865
No 366
>cd05766 IgC_MHC_II_beta Class II major histocompatibility complex (MHC) beta chain immunoglobulin domain. IgC_MHC_II_beta: Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class II beta chain. MHC class II molecules play a key role in the initiation of the antigen-specific immune reponse. In both humans and in mice these molecules have been shown to be expressed constitutively on the cell surface of professional antigen-presenting cells (APCs), for example on B-lymphocytes, monocytes, and macrophages. The expression of these molecules has been shown to be induced in nonprofessional APCs such as keratinocyctes, and they are expressed on the surface of activated human T cells and on T cells from other species. The MHC II molecules present antigenic peptides to CD4(+) T-lymphocytes. These peptides derive mostly from protelytic processing via the endocytic pathway, of antigens internalized by the APC. These peptides bind to the MHC class II molecules in the endosome be
Probab=97.24 E-value=0.0026 Score=52.69 Aligned_cols=68 Identities=21% Similarity=0.337 Sum_probs=40.5
Q ss_pred ccCcEEEEEEeec-CCCC-eEEEEEcccccccc-cccccCCCCCCceEeecceEEEeCCCCCCCCeEEEEEEEeCc
Q psy12060 208 ILNDITLSCYAGG-YPNP-SYEWFKEDYVQDRL-VANLIDPLSDKRFTLSGGNLIINDPRQVEDRGSYHCKASNKF 280 (978)
Q Consensus 208 ~g~~~~l~C~~~g-~p~~-~v~W~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~i~~~~~~~d~G~Y~C~a~n~~ 280 (978)
.|+.++|.|.+.| .|.. +++|+|||.++... ......+..+..+.. ...|.+ ...+...|.|++....
T Consensus 13 ~~~~~~L~C~~~gFyP~~i~v~W~~~g~~~~~~~~~~~~~~~~dgTy~~-~s~L~~----~~~~~~~ysC~V~H~~ 83 (94)
T cd05766 13 LSHPHLLVCHVWGFYPPEITVKWFKNGQEETEGVVSTELIPNGDWTYQI-LVMLET----TPSRGDTYTCVVEHSS 83 (94)
T ss_pred CCCCeEEEEEEeeecCCCCEEEEEECCeecCCCceecceEECCCCcEEE-EEEEEE----cCCCCCEEEEEEEeCC
Confidence 3566999999988 5554 89999999875431 111111222222322 123333 2346779999998764
No 367
>cd05767 IgC_MHC_II_alpha Class II major histocompatibility complex (MHC) alpha chain immunoglobulin domain. IgC_MHC_II_alpha: Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class II alpha chain. MHC class II molecules play a key role in the initiation of the antigen-specific immune reponse. In both humans and in mice these molecules have been shown to be expressed constitutively on the cell surface of professional antigen-presenting cells (APCs), for example on B-lymphocytes, monocytes, and macrophages. The expression of these molecules has been shown to be induced in nonprofessional APCs such as keratinocyctes, and they are expressed on the surface of activated human T cells and on T cells from other species. The MHC II molecules present antigenic peptides to CD4(+) T-lymphocytes. These peptides derive mostly from protelytic processing via the endocytic pathway, of antigens internalized by the APC. These peptides bind to the MHC class II molecules in the endosom
Probab=97.24 E-value=0.0023 Score=52.76 Aligned_cols=67 Identities=19% Similarity=0.300 Sum_probs=41.9
Q ss_pred cCcEEEEEEeec-CCC-CeEEEEEccccccc-ccccccCCCCCCceEeecceEEEeCCCCCCCCeEEEEEEEeCc
Q psy12060 209 LNDITLSCYAGG-YPN-PSYEWFKEDYVQDR-LVANLIDPLSDKRFTLSGGNLIINDPRQVEDRGSYHCKASNKF 280 (978)
Q Consensus 209 g~~~~l~C~~~g-~p~-~~v~W~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~d~G~Y~C~a~n~~ 280 (978)
|+..+|.|.|.| .|. .+++|.|||.++.. .......+..+..+... ..|.+.. ++...|+|.+....
T Consensus 15 ~~~~tL~C~a~gFyP~~I~v~W~~~g~~~~~~~~~~~~~~~~Dgty~~~-s~L~v~~----~~~~~ytC~V~H~~ 84 (94)
T cd05767 15 GEPNTLICFVDNFFPPVLNVTWLKNGVPVTDGVSETRYYPRQDLSFQKF-SYLNFTP----EEGDIYSCIVEHWG 84 (94)
T ss_pred CCCeEEEEEEEEEECCcCEEEEEECCeEccCceEEeeeEeCCCCcEEEE-EEEEEEC----CCCCeEEEEEEeCC
Confidence 455899999998 554 58999999987643 11122223334444432 3455533 45679999998753
No 368
>smart00407 IGc1 Immunoglobulin C-Type.
Probab=97.22 E-value=0.0017 Score=51.37 Aligned_cols=66 Identities=26% Similarity=0.489 Sum_probs=41.2
Q ss_pred ceeEEEEeecC-C-CCeeEEeECCEECCCCCCC---CCCCCcEEEecCEEEEEeCCCCCCCeEEEEEEEcCC
Q psy12060 505 DLTWTCEAFGV-P-DVTYSWFRNGELLNSETLP---LEDQDRYFIQDNVLTIRYLNPERDPAMYQCRAKNQL 571 (978)
Q Consensus 505 ~~~l~C~~~~~-p-~~~i~W~~~g~~~~~~~~~---~~~~~~~~~~~~~l~i~~~~~~~d~G~Y~C~a~n~~ 571 (978)
.++|.|.+.|+ | ...++|+|||+++...... ..+.+........|.+..... ++...|+|.+.+..
T Consensus 1 ~~~L~C~a~gf~P~~i~v~W~k~g~~~~~~~~~~~~~~~~~gt~~~~s~L~v~~~~~-~~~~~~tC~V~H~~ 71 (75)
T smart00407 1 KATLVCLVSGFYPPDITVTWLRNGQEVTSGVSTTDPLKNSDGTYFLSSYLTVSASTW-ESGDTYTCQVTHEG 71 (75)
T ss_pred CeEEEEEEEeEeCCCCEEEEEECCEECCCCEEECceEECCCCCEEEEEEEEEccccC-CCCCEEEEEEEEcC
Confidence 36899999987 5 4799999999975432111 001122222334566654443 56789999998754
No 369
>cd05720 Ig_CD8_alpha Immunoglobulin (Ig) like domain of CD8 alpha chain. Ig_CD8_alpha: immunoglobulin (Ig)-like domain in CD8 alpha. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alphaalpha or alphabeta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a v-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain. The Ig domain of CD8 alpha binds to antibodies.
Probab=97.21 E-value=0.0011 Score=56.57 Aligned_cols=71 Identities=23% Similarity=0.296 Sum_probs=44.2
Q ss_pred cccCcEEEEEEeecCCCCeEEEEEcccc----ccccccccc-------CC-CCCCceEe----ecceEEEeCCCCCCCCe
Q psy12060 207 SILNDITLSCYAGGYPNPSYEWFKEDYV----QDRLVANLI-------DP-LSDKRFTL----SGGNLIINDPRQVEDRG 270 (978)
Q Consensus 207 ~~g~~~~l~C~~~g~p~~~v~W~~~~~~----~~~~~~~~~-------~~-~~~~~~~~----~~~~l~i~~~~~~~d~G 270 (978)
++|++|+|+|...+.-...+.|||.... ..-+..... .. ....++.. ...+|.|.++ +.+|+|
T Consensus 4 ~~G~~vtL~C~~~~~~~~~v~Wyrq~~g~~~~~~~l~~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~L~I~~~-~~sDsg 82 (104)
T cd05720 4 ELGQKVELKCEVLNSSPTGCSWLFQPPGSAPQPTFLVYLSGSSKITWDEEELSSKRFSGSRSSNSFVLTLKNF-QKENEG 82 (104)
T ss_pred cCCCeEEEEEEecCCCCCcEEEEEeCCCCCCCCEEEEEEeCCCCeeeccccCCCceEEEEecCCEEEEEECCC-CHHHCE
Confidence 4688999999986554567999997532 110111100 00 01234442 1236899997 999999
Q ss_pred EEEEEEEe
Q psy12060 271 SYHCKASN 278 (978)
Q Consensus 271 ~Y~C~a~n 278 (978)
.|.|.+.+
T Consensus 83 tY~Ca~~~ 90 (104)
T cd05720 83 YYFCSVAS 90 (104)
T ss_pred EEEEEEcc
Confidence 99998764
No 370
>cd07691 Ig_CD3_gamma_delta Immunoglobulin (Ig)-like domain of CD3 gamma and delta chains. Ig_CD3_gamma_delta; immunoglobulin (Ig)-like domain of CD3 gamma and delta chains. CD3 is a T cell surface receptor that is associated with alpha/beta T cell receptors (TCRs). The CD3 complex consists of one gamma, one delta, two epsilon, and two zeta chains. The CD3 subunits form heterodimers as gamma/epsilon, delta/epsilon, and zeta/zeta. The gamma, delta, and epsilon chains each contain an extracellular Ig domain, whereas the extracellular domains of the zeta chains are very small and have unknown structure. The CD3 domain participates in intracellular signalling once the TCR has bound an MHC/antigen complex.
Probab=97.19 E-value=0.00094 Score=49.32 Aligned_cols=61 Identities=21% Similarity=0.461 Sum_probs=43.3
Q ss_pred CCCcEEEEEEEeecCCCeeEEEEcCccCCCCceeeecccEEEeCCCCCCCCeEEEEEEEeCCCceEEEEEEEEEe
Q psy12060 413 AGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYFENFNRILTIPNVKVEDQGEYICRASNDRSALESSVTISIQA 487 (978)
Q Consensus 413 ~G~~~~l~C~~~g~p~~~v~W~~~~~~l~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~ 487 (978)
..+.|.|+|.+ ..+|+|++ |..+.... +.+|.+.+...+-.|.|.|.+++ .+....|+|.+
T Consensus 5 ~~~~V~L~C~~----~tsi~W~k-G~~~~~~~-----~~tlnLGs~~~DPRG~Y~C~~s~----~~~~~~LQVyY 65 (69)
T cd07691 5 SEGKVFLKCNG----ATNITWKK-GKEILEVS-----NTLLDLGSRINDPRGTYSCKESE----PNKEKTLQVYY 65 (69)
T ss_pred cCceEEEEecC----CCcEEEec-Cccccccc-----ccEEeccCcccCCCcceEecCcc----CCCcEEEEEEE
Confidence 35679999965 24699999 55554322 56888999999999999999876 22344555543
No 371
>PF08205 C2-set_2: CD80-like C2-set immunoglobulin domain ; InterPro: IPR013162 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the C2-set type domains found in the T-cell antigen CD80, as well as in related proteins. CD80 (B7-1) is a glycoprotein expressed on antigen-presenting cells []. The shared ligands on CD80 and CD86 (B7-2) deliver the co-stimulatory signal through CD28 and CTLA-4 on T-cells, where CD28 augments the T-cell response and CTLA-4 attenuates it [].; PDB: 3S58_A 3O3U_N 3CJJ_A 3S59_A 2PF6_B 2PET_A 3ALP_A 3SKU_D 3U83_A 3U82_B ....
Probab=97.19 E-value=0.00073 Score=55.86 Aligned_cols=70 Identities=21% Similarity=0.401 Sum_probs=43.7
Q ss_pred CCceeEEEEee-cCCCCeeEEeECCEECCCC--CCCCCCCCcEEEecCEEEEEeCCCCCCCeEEEEEEEcCCCc
Q psy12060 503 QADLTWTCEAF-GVPDVTYSWFRNGELLNSE--TLPLEDQDRYFIQDNVLTIRYLNPERDPAMYQCRAKNQLKT 573 (978)
Q Consensus 503 g~~~~l~C~~~-~~p~~~i~W~~~g~~~~~~--~~~~~~~~~~~~~~~~l~i~~~~~~~d~G~Y~C~a~n~~g~ 573 (978)
|+.+.|+|.+. ++|.+.|+|+.++..+... ................|.+.... .++...++|.|.+....
T Consensus 14 ~~~~~~~C~s~~~~P~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~S~l~~~~~~-~~~~~~~~C~~~~~~~~ 86 (89)
T PF08205_consen 14 GEEVTLTCSSSGGYPPPQITWYLDGGPVVASNTTQSSSPDNGLFTVSSTLTLTPTR-EDHGKTLTCRASHPALS 86 (89)
T ss_dssp TEEEEEEEEEEEEBS-EEEEEEETTCEECEEEEEEEEETTTTTEEEEEEEEEETTG-GGTTEEEEEEEEETTCC
T ss_pred ceEEEEEEEeCCeECCeEEEEEECCCceeeeeeeeeeccCCCcceEEEEEEEEcCh-HHCCeEEEEEEECCccC
Confidence 78999999876 6799999999998777210 00000112222223366666443 35777899999987643
No 372
>cd05769 IgC_TCR_beta T cell receptor (TCR) beta chain constant immunoglobulin domain. IgC_TCR_beta: Constant domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the beta chain. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The antigen binding site is formed by the variable domains of the alpha and beta chains, located at the N-terminus of each chain. Alpha/beta TCRs recognize antigens differently from gamma/delta TCRs.
Probab=97.17 E-value=0.0026 Score=54.53 Aligned_cols=80 Identities=19% Similarity=0.279 Sum_probs=48.6
Q ss_pred CCcccccCCCceeEEEEeecC-C-CCeeEEeECCEECCCCCC----CCCCCCcEEEecCEEEEEeCCCCCCCeEEEEEEE
Q psy12060 495 LTDKHMDNQADLTWTCEAFGV-P-DVTYSWFRNGELLNSETL----PLEDQDRYFIQDNVLTIRYLNPERDPAMYQCRAK 568 (978)
Q Consensus 495 ~~~~~~~~g~~~~l~C~~~~~-p-~~~i~W~~~g~~~~~~~~----~~~~~~~~~~~~~~l~i~~~~~~~d~G~Y~C~a~ 568 (978)
+....+..++.++|.|.+.++ | ...|+|+|||..+..+.. .....+..+.....|.+....-.++...|+|.+.
T Consensus 10 ps~~e~~~~~~~tL~Cla~gFyP~~I~V~W~kng~~l~~g~~~~~~~~~~~~gTYs~~S~L~v~~~~w~~~~~~ytC~V~ 89 (115)
T cd05769 10 PSEAEIRNKRKATLVCLATGFYPDHVSLSWKVNGKEVTDGVATDPQALRENTSTYSISSRLRVSATEWFNPRNTFTCIVQ 89 (115)
T ss_pred cChHHhccCCCcEEEEEEEeEeCCCcEEEEEECCEECCCCcccccceecCCCCeEEEEEEEEEChHHhccCCCeEEEEEE
Confidence 333445567789999999986 5 468999999998764321 1111112233334566554321012568999999
Q ss_pred cCCCce
Q psy12060 569 NQLKTR 574 (978)
Q Consensus 569 n~~g~~ 574 (978)
+.....
T Consensus 90 H~g~~~ 95 (115)
T cd05769 90 FYGGTD 95 (115)
T ss_pred EeCCcc
Confidence 875444
No 373
>cd05847 IgC_CH2_IgE CH2 domain (second constant Ig domain of the heavy chain) in immunoglobulin E (IgE). IgC_CH2_IgE: The second constant domain of the heavy chain of immunoglobulin E (IgE). The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma, and mu, all consisting of a variable domain (VH) and three (in alpha, delta, and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). The different classes of antibodies vary in their heavy chains; the IgE class has the epsilon type. This domain (Cepsilon2) of IgE is in place of the flexible hinge region found in IgG.
Probab=97.17 E-value=0.0023 Score=52.85 Aligned_cols=76 Identities=16% Similarity=0.338 Sum_probs=45.9
Q ss_pred CcccccCCCceeEEEEeecC-C-CCeeEEeECCEECCCCCC---C-CCCCCcEEEecCEEEEEeCCCCCCCeEEEEEEEc
Q psy12060 496 TDKHMDNQADLTWTCEAFGV-P-DVTYSWFRNGELLNSETL---P-LEDQDRYFIQDNVLTIRYLNPERDPAMYQCRAKN 569 (978)
Q Consensus 496 ~~~~~~~g~~~~l~C~~~~~-p-~~~i~W~~~g~~~~~~~~---~-~~~~~~~~~~~~~l~i~~~~~~~d~G~Y~C~a~n 569 (978)
.......++.++|.|.+.|+ | ..+|+|++||..+..... . ....+.+ .....|.+..-.- .+...|+|.+.+
T Consensus 7 s~~~~~~~~~~~L~C~a~gFyP~~I~vtW~~dg~~~~~~~~~s~~~~~~~~Ty-~~~S~L~v~~~~w-~~~~~ytC~V~H 84 (94)
T cd05847 7 SCCDTGTSETIQLLCLISGYTPGTIEVEWLVDGQVATLVAASTAPQKEEGSTF-STTSELNVTQEDW-KSGKTYTCKVTH 84 (94)
T ss_pred ChHHcCCCCCEEEEEEEEeEECCCCEEEEEECCEECcCceeecccEECCCCcE-EEEEEEEEchHHh-cCCCeEEEEEEE
Confidence 33333456679999999986 5 588999999998743211 0 1112222 2233555553221 356799999998
Q ss_pred CCCc
Q psy12060 570 QLKT 573 (978)
Q Consensus 570 ~~g~ 573 (978)
....
T Consensus 85 ~~~~ 88 (94)
T cd05847 85 QGTT 88 (94)
T ss_pred CCee
Confidence 6543
No 374
>cd05719 Ig2_PVR_like Second immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins. Ig2_PVR_like: domain similar to the second immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), these result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus
Probab=97.17 E-value=0.0028 Score=52.44 Aligned_cols=65 Identities=11% Similarity=0.125 Sum_probs=39.3
Q ss_pred cEEEEEEe-ecCCCCeEEEEEcccccccccccccCCCCCCceEeecceEEEeCCCCCCCCeEEEEEEEeCc
Q psy12060 211 DITLSCYA-GGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVEDRGSYHCKASNKF 280 (978)
Q Consensus 211 ~~~l~C~~-~g~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~d~G~Y~C~a~n~~ 280 (978)
...++|.+ .|+|+++|+|+++.... .. .......++.+. ....|.+... ..+|.-.|+|++.|..
T Consensus 17 ~~va~C~s~~gkP~a~ItW~~~~~~~--~~-~~~~~~~~g~~t-v~S~l~~~p~-~~d~G~~~tC~v~h~~ 82 (95)
T cd05719 17 VTVATCVSANGKPPATISWETTLGGE--AE-TQSKENPNGTVT-VTSEYRLVPS-REANGKELTCVVSHPT 82 (95)
T ss_pred cEEEEEECCCCcCCCEEEEEeCCCCc--ce-eEeecCCCCCEE-EEEEEEEecC-HHHCCCEEEEEEeCcc
Confidence 37899998 69999999999972111 00 000011111222 2235666553 5667779999999875
No 375
>cd07698 IgC_MHC_I_alpha3 Class I major histocompatibility complex (MHC) alpha chain immunoglobulin domain. IgC_MHC_I_alpha3; Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class I alpha chain. Class I MHC proteins bind antigenic peptide fragments and present them to CD8+ T lymphocytes. Class I molecules consist of a transmembrane alpha chain and a small chain called the beta2 microglobulin. The alpha chain contains three extracellular domains, two of which fold together to form the peptide-binding cleft (alpha1 and alpha2), and one which has an Ig fold (alpha3). Peptide binding to class I molecules occurs in the endoplasmic reticulum (ER) and involves both chaperones and dedicated factors to assist in peptide loading. Class I MHC molecules are expressed on most nucleated cells.
Probab=97.13 E-value=0.0027 Score=52.78 Aligned_cols=66 Identities=29% Similarity=0.513 Sum_probs=39.7
Q ss_pred CCceeEEEEeecC-CC-CeeEEeECCEECCCCCC---CCCCCCcEEEecCEEEEEeCCCCCCCeEEEEEEEcCCC
Q psy12060 503 QADLTWTCEAFGV-PD-VTYSWFRNGELLNSETL---PLEDQDRYFIQDNVLTIRYLNPERDPAMYQCRAKNQLK 572 (978)
Q Consensus 503 g~~~~l~C~~~~~-p~-~~i~W~~~g~~~~~~~~---~~~~~~~~~~~~~~l~i~~~~~~~d~G~Y~C~a~n~~g 572 (978)
|+.++|.|.+.|+ |. ..++|+++|+.+..... ...+.+........|.+. . .+.+.|+|.+.+...
T Consensus 14 ~~~~~L~C~a~gF~P~~i~v~W~~~g~~~~~~~~~~~~~~~~d~ty~~~s~l~v~---~-~~~~~ytC~V~H~~~ 84 (93)
T cd07698 14 DGSLTLSCHATGFYPRDIEVTWLRDGEDSVDDVESGEILPNGDGTYQLWVTLEVP---P-EDKARYSCRVEHSGL 84 (93)
T ss_pred CCcEEEEEEEEEEeCCCcEEEEEECCEECcccccccceEECCCCeEEEEEEEEEC---C-CCCCEEEEEEEeCCC
Confidence 7789999999996 53 49999999964432210 000111111122233333 3 577899999987643
No 376
>cd05720 Ig_CD8_alpha Immunoglobulin (Ig) like domain of CD8 alpha chain. Ig_CD8_alpha: immunoglobulin (Ig)-like domain in CD8 alpha. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alphaalpha or alphabeta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a v-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain. The Ig domain of CD8 alpha binds to antibodies.
Probab=97.11 E-value=0.0016 Score=55.46 Aligned_cols=63 Identities=22% Similarity=0.452 Sum_probs=43.2
Q ss_pred CCCCCCcEEEEEEEeecCCCeeEEEEcCcc----C------CC--C----------ceee----ecccEEEeCCCCCCCC
Q psy12060 410 APKAGDKVRLECVAFGYPVPSYNWTRRGSP----L------PR--N----------AYFE----NFNRILTIPNVKVEDQ 463 (978)
Q Consensus 410 ~v~~G~~~~l~C~~~g~p~~~v~W~~~~~~----l------~~--~----------~~~~----~~~~~L~i~~~~~~d~ 463 (978)
.+.+|++|+|.|.+.......+.|||.... + .. . .++. .....|+|.+++.+|+
T Consensus 2 ~v~~G~~vtL~C~~~~~~~~~v~Wyrq~~g~~~~~~~l~~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~L~I~~~~~sDs 81 (104)
T cd05720 2 DAELGQKVELKCEVLNSSPTGCSWLFQPPGSAPQPTFLVYLSGSSKITWDEEELSSKRFSGSRSSNSFVLTLKNFQKENE 81 (104)
T ss_pred cccCCCeEEEEEEecCCCCCcEEEEEeCCCCCCCCEEEEEEeCCCCeeeccccCCCceEEEEecCCEEEEEECCCCHHHC
Confidence 356899999999886544457999995421 1 00 0 1111 1224699999999999
Q ss_pred eEEEEEEEe
Q psy12060 464 GEYICRASN 472 (978)
Q Consensus 464 G~Y~C~a~n 472 (978)
|.|.|.+.+
T Consensus 82 gtY~Ca~~~ 90 (104)
T cd05720 82 GYYFCSVAS 90 (104)
T ss_pred EEEEEEEcc
Confidence 999998763
No 377
>cd07700 IgV_CD8_beta Immunoglobulin (Ig) like domain of CD8 beta chain. IgV_CD8_beta: immunoglobulin (Ig)-like domain in CD8 beta. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alpha/alpha or alpha/beta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a V-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain.
Probab=97.10 E-value=0.00077 Score=57.87 Aligned_cols=62 Identities=27% Similarity=0.432 Sum_probs=42.5
Q ss_pred CCCCCcEEEEEEEeec-CCCeeEEEEcCcc---C--------C-C----------Cceee------ecccEEEeCCCCCC
Q psy12060 411 PKAGDKVRLECVAFGY-PVPSYNWTRRGSP---L--------P-R----------NAYFE------NFNRILTIPNVKVE 461 (978)
Q Consensus 411 v~~G~~~~l~C~~~g~-p~~~v~W~~~~~~---l--------~-~----------~~~~~------~~~~~L~i~~~~~~ 461 (978)
+.+|++++|.|.+.+. ....+.|||.... . . . ..++. .....|+|.+++.+
T Consensus 3 v~~G~~vtL~C~~~~~~~~~~~~Wyrq~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~I~~~~~~ 82 (107)
T cd07700 3 VQTNNTVKLSCEAKGISENTRIYWLRWRQAPKDSHFEFLALWSPLGGATYGEEVSQEKFSIRVTSDSSRYRLHINRVKPE 82 (107)
T ss_pred EcCCCCEEEEEEEecCCCCCeEEEEEECCCCCCCccEEEEEEcCCCCeEEccccccCcEEEEEECCCCEEEEEECCCCHH
Confidence 4689999999998753 3447999985431 0 0 0 01111 01235999999999
Q ss_pred CCeEEEEEEEe
Q psy12060 462 DQGEYICRASN 472 (978)
Q Consensus 462 d~G~Y~C~a~n 472 (978)
|+|.|.|...+
T Consensus 83 Dsg~YyCa~~~ 93 (107)
T cd07700 83 DSGTYFCMTVG 93 (107)
T ss_pred HCEEEEEeEcC
Confidence 99999999863
No 378
>KOG4367|consensus
Probab=97.08 E-value=0.00048 Score=69.36 Aligned_cols=74 Identities=19% Similarity=0.342 Sum_probs=57.7
Q ss_pred cccCcEEEEEEeCCCCCCCCCcceEEEEEEecCCccceeeeeeeccceeEEEEEcCCCCceeeEEEEEEEecCCCCCCCC
Q psy12060 897 GKIGDLSISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETLKEYGNVGIAVVRIPSEFYYTEYEVKVQAINDVGPGPES 976 (978)
Q Consensus 897 ~~~~si~v~W~~p~~~~~~g~i~~Y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~p~t~Y~~~V~A~n~~G~gp~S 976 (978)
...++++|+|..|| ..+.+..||.++....++..+..+-+. ..+..+++||..++.|..||.|+|..|.+|.|
T Consensus 450 t~nns~t~~wkqp~--~~~~~~dg~~leld~g~~g~frevy~g-----~etmctvdglhfns~y~arvka~n~tg~s~ys 522 (699)
T KOG4367|consen 450 THNNSATLSWKQPP--LSTVPADGYILELDDGNGGQFREVYVG-----KETMCTVDGLHFNSTYNARVKAFNKTGVSPYS 522 (699)
T ss_pred ccCCceEEEeecCC--CCCCCCcceEEEeecCCCCceeEEEec-----CceeEEecceecchhHHHHHHHhhccCCCccc
Confidence 44578999999743 456788999999877665555443221 23567899999999999999999999999998
Q ss_pred C
Q psy12060 977 E 977 (978)
Q Consensus 977 ~ 977 (978)
+
T Consensus 523 ~ 523 (699)
T KOG4367|consen 523 K 523 (699)
T ss_pred c
Confidence 6
No 379
>cd07703 Ig2_Nectin-2_like Second immunoglobulin (Ig) domain of nectin-2 (also known as poliovirus receptor related protein 2 or CD112) and similar proteins. Ig2_Nectin-2_like: domain similar to the second immunoglobulin (Ig) domain of nectin-2 (also known as poliovirus receptor related protein 2 or CD112). Nectin-2 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectin-2 and nectin-3 localize at Sertoli-spermatid junctions where they form heterophilic trans-interactions between the cells that are essential for the formation and maintenance of the junctions and for spermatid development.
Probab=97.07 E-value=0.0031 Score=51.95 Aligned_cols=64 Identities=13% Similarity=0.165 Sum_probs=39.2
Q ss_pred EEEEEEe-ecCCCCeEEEEEcccccccccccccCCCCCCceEeecceEEEeCCCCCCCCeEEEEEEEeCc
Q psy12060 212 ITLSCYA-GGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVEDRGSYHCKASNKF 280 (978)
Q Consensus 212 ~~l~C~~-~g~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~d~G~Y~C~a~n~~ 280 (978)
+.++|.+ .|+|++.|+|+++.... ..... ....+..+.. ...|.+... ..+|...|+|+|.+..
T Consensus 18 ~va~C~s~~gkPaa~IsW~~~~~g~--~~~~~-~~~~~gt~tv-~S~l~~~P~-~~d~Gk~ltC~v~h~a 82 (95)
T cd07703 18 PVAKCVSANGRPPARISWSSTLGGN--ANTTS-KENGDGTVTV-TSEYSLVPT-PEANGKEVTCKVEHET 82 (95)
T ss_pred EEEEEEcCCCCCCcEEEEEcCCCCC--eeEEE-EeCCCCCEEE-EEEEEEecC-HHHCCCEEEEEEeCcc
Confidence 8999987 48999999999983211 10011 1111222222 234555443 5677789999999875
No 380
>cd07706 IgV_TCR_delta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) delta chain. IgV_TCR_delta: immunoglobulin (Ig) variable (V) domain of the delta chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is
Probab=97.06 E-value=0.0014 Score=57.44 Aligned_cols=72 Identities=18% Similarity=0.299 Sum_probs=49.4
Q ss_pred CCCeeeecccCeEEEeCCCCCCCCceEEEeccc--cc-ccc---------cccceEEEee-----CCcEEEeeeeeecce
Q psy12060 302 RAPEIGNQNWGKAMFCDPPTNYPGVNYYWARDY--FP-NFV---------EEDKRVFVSY-----DGALYFSALEQIDAG 364 (978)
Q Consensus 302 ~~~~~~~~~~~~~l~C~~~~~~p~~~i~W~~~~--~~-~~~---------~~~~~~~~~~-----~~~L~i~~~~~~d~G 364 (978)
+....+..|+.++|.|..........+.|+|.. .. ..+ ....|+.+.. +.+|.|.+++.+|+|
T Consensus 6 ~~~v~~~~G~~v~L~C~~~~~~~~~~v~Wyrq~~~~~~~~l~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~~~~~Dsg 85 (116)
T cd07706 6 QPDVSVQVGEEVTLNCRYETSWTNYYIFWYKQLPSGEMTFLIRQKSIYGNATKGRYSVNFQKAQKSISLTISALQLEDSA 85 (116)
T ss_pred CCceEEcCCCCEEEEEEEeCCCCceEEEEEEECCCCceEEEEEecCccCCccCCeEEEEEeccCCEEEEEECCCCHHHCE
Confidence 345567889999999987544455679999842 11 111 1234555542 126999999999999
Q ss_pred eeEEEEEee
Q psy12060 365 NYSCNVQSK 373 (978)
Q Consensus 365 ~Y~C~~~n~ 373 (978)
.|.|.+...
T Consensus 86 ~Y~C~~~~~ 94 (116)
T cd07706 86 KYFCALSTL 94 (116)
T ss_pred EEEEEEECC
Confidence 999999753
No 381
>cd05768 IgC_CH4 CH4 domain (fourth constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH4: The fourth immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=97.06 E-value=0.0026 Score=53.57 Aligned_cols=73 Identities=21% Similarity=0.452 Sum_probs=44.6
Q ss_pred ccccCCCceeEEEEeecC-C-CCeeEEeECCEECCCCC----CCCCCC--CcEEEecCEEEEEeCCCCCCCeEEEEEEEc
Q psy12060 498 KHMDNQADLTWTCEAFGV-P-DVTYSWFRNGELLNSET----LPLEDQ--DRYFIQDNVLTIRYLNPERDPAMYQCRAKN 569 (978)
Q Consensus 498 ~~~~~g~~~~l~C~~~~~-p-~~~i~W~~~g~~~~~~~----~~~~~~--~~~~~~~~~l~i~~~~~~~d~G~Y~C~a~n 569 (978)
..+..|+.++|.|.+.|+ | ...++|+|||+++.... ....+. +..+.....|.+..-. ..+...|+|.+.+
T Consensus 11 ~~~~~~~~~tL~C~a~gFyP~~i~v~W~k~g~~~~~~~~~~~~~~~~~~~dgTy~~~s~L~v~~~~-w~~~~~ytC~V~H 89 (102)
T cd05768 11 EELSLQETATLTCLVKGFSPSDIFVKWLQNGQPLSKQKYVTTAPMQEPGGNESYFLYSKLTVSAED-WNAGDVFTCVVGH 89 (102)
T ss_pred HHhCcCCceEEEEEEeeEeCCCCEEEEEECCEECCcccccccCcccccCCCCeEEEEEEEEEcHHH-hcCCCcEEEEeEe
Confidence 344567889999999986 4 45789999999875321 111111 1222223355554322 1355689999987
Q ss_pred CC
Q psy12060 570 QL 571 (978)
Q Consensus 570 ~~ 571 (978)
..
T Consensus 90 ~~ 91 (102)
T cd05768 90 EA 91 (102)
T ss_pred CC
Confidence 54
No 382
>cd05766 IgC_MHC_II_beta Class II major histocompatibility complex (MHC) beta chain immunoglobulin domain. IgC_MHC_II_beta: Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class II beta chain. MHC class II molecules play a key role in the initiation of the antigen-specific immune reponse. In both humans and in mice these molecules have been shown to be expressed constitutively on the cell surface of professional antigen-presenting cells (APCs), for example on B-lymphocytes, monocytes, and macrophages. The expression of these molecules has been shown to be induced in nonprofessional APCs such as keratinocyctes, and they are expressed on the surface of activated human T cells and on T cells from other species. The MHC II molecules present antigenic peptides to CD4(+) T-lymphocytes. These peptides derive mostly from protelytic processing via the endocytic pathway, of antigens internalized by the APC. These peptides bind to the MHC class II molecules in the endosome be
Probab=97.05 E-value=0.0041 Score=51.50 Aligned_cols=62 Identities=18% Similarity=0.369 Sum_probs=42.0
Q ss_pred CCCCcEEEEEEEee-cCCC-eeEEEEcCccCCCCce----eeeccc------EEEeCCCCCCCCeEEEEEEEeCCCc
Q psy12060 412 KAGDKVRLECVAFG-YPVP-SYNWTRRGSPLPRNAY----FENFNR------ILTIPNVKVEDQGEYICRASNDRSA 476 (978)
Q Consensus 412 ~~G~~~~l~C~~~g-~p~~-~v~W~~~~~~l~~~~~----~~~~~~------~L~i~~~~~~d~G~Y~C~a~n~~g~ 476 (978)
..|+.++|.|.+.| +|.. .++|++||..+..... ..+.++ .|.+. ..+...|+|++.+....
T Consensus 12 ~~~~~~~L~C~~~gFyP~~i~v~W~~~g~~~~~~~~~~~~~~~~dgTy~~~s~L~~~---~~~~~~ysC~V~H~~l~ 85 (94)
T cd05766 12 SLSHPHLLVCHVWGFYPPEITVKWFKNGQEETEGVVSTELIPNGDWTYQILVMLETT---PSRGDTYTCVVEHSSLQ 85 (94)
T ss_pred cCCCCeEEEEEEeeecCCCCEEEEEECCeecCCCceecceEECCCCcEEEEEEEEEc---CCCCCEEEEEEEeCCCC
Confidence 46899999999998 5544 7899999998765311 112222 24333 34566999999987543
No 383
>cd05767 IgC_MHC_II_alpha Class II major histocompatibility complex (MHC) alpha chain immunoglobulin domain. IgC_MHC_II_alpha: Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class II alpha chain. MHC class II molecules play a key role in the initiation of the antigen-specific immune reponse. In both humans and in mice these molecules have been shown to be expressed constitutively on the cell surface of professional antigen-presenting cells (APCs), for example on B-lymphocytes, monocytes, and macrophages. The expression of these molecules has been shown to be induced in nonprofessional APCs such as keratinocyctes, and they are expressed on the surface of activated human T cells and on T cells from other species. The MHC II molecules present antigenic peptides to CD4(+) T-lymphocytes. These peptides derive mostly from protelytic processing via the endocytic pathway, of antigens internalized by the APC. These peptides bind to the MHC class II molecules in the endosom
Probab=96.96 E-value=0.0096 Score=49.10 Aligned_cols=66 Identities=15% Similarity=0.253 Sum_probs=42.5
Q ss_pred cCCCceeEEEEeecC-C-CCeeEEeECCEECCCCCC----CCCCCCcEEEecCEEEEEeCCCCCCCeEEEEEEEcCC
Q psy12060 501 DNQADLTWTCEAFGV-P-DVTYSWFRNGELLNSETL----PLEDQDRYFIQDNVLTIRYLNPERDPAMYQCRAKNQL 571 (978)
Q Consensus 501 ~~g~~~~l~C~~~~~-p-~~~i~W~~~g~~~~~~~~----~~~~~~~~~~~~~~l~i~~~~~~~d~G~Y~C~a~n~~ 571 (978)
..|+.++|.|.+.|+ | ...++|.|||..+..... ....+..|.+ ...|.+. + .+...|+|.+.+..
T Consensus 13 ~~~~~~tL~C~a~gFyP~~I~v~W~~~g~~~~~~~~~~~~~~~~Dgty~~-~s~L~v~---~-~~~~~ytC~V~H~~ 84 (94)
T cd05767 13 ELGEPNTLICFVDNFFPPVLNVTWLKNGVPVTDGVSETRYYPRQDLSFQK-FSYLNFT---P-EEGDIYSCIVEHWG 84 (94)
T ss_pred cCCCCeEEEEEEEEEECCcCEEEEEECCeEccCceEEeeeEeCCCCcEEE-EEEEEEE---C-CCCCeEEEEEEeCC
Confidence 446678999999986 4 678999999998764311 1112222322 2345554 2 45669999998754
No 384
>cd07692 Ig_CD3_epsilon Immunoglobulin (Ig)-like domain of CD3 epsilon chain. Ig_CD3_epsilon; immunoglobulin (Ig)-like domain of CD3 epsilon chain. CD3 is a T cell surface receptor that is associated with alpha/beta T cell receptors (TCRs). The CD3 complex consists of one gamma, one delta, two epsilon, and two zeta chains. The CD3 subunits form heterodimers as gamma/epsilon, delta/epsilon, and zeta/zeta. The gamma, delta, and epsilon chains each contain an extracellular Ig domain, whereas the extracellular domains of the zeta chains are very small and have unknown structure. The CD3 domain participates in intracellular signalling once the TCR has bound an MHC/antigen complex.
Probab=96.93 E-value=0.0014 Score=48.17 Aligned_cols=51 Identities=22% Similarity=0.393 Sum_probs=37.0
Q ss_pred CCCcEEEEEEEeecCCCeeEEEEcCccCCCCceeeecccEEEeCCCCCCCCeEEEEEEEeC
Q psy12060 413 AGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYFENFNRILTIPNVKVEDQGEYICRASND 473 (978)
Q Consensus 413 ~G~~~~l~C~~~g~p~~~v~W~~~~~~l~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~ 473 (978)
.|.+|+|+|...+ ..+.|.+++..+... +..+.+.+-. +++|.|+|.+.+.
T Consensus 6 sGTtVtlTCP~~~---~~i~W~~n~~~~~g~------~~~~~~~~~~-e~~G~Y~C~~~~~ 56 (65)
T cd07692 6 SGTTVTVTCPLSG---DDIKWKKNDQVSQGS------DEKYLSLNHF-SSSGYYHCTADNA 56 (65)
T ss_pred eccEEEEECCCCC---CCceEEeCCccCCCC------CceEEeeccC-CCCceEEEEeCCC
Confidence 6999999996442 239999999766542 2345555555 8999999999643
No 385
>cd07698 IgC_MHC_I_alpha3 Class I major histocompatibility complex (MHC) alpha chain immunoglobulin domain. IgC_MHC_I_alpha3; Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class I alpha chain. Class I MHC proteins bind antigenic peptide fragments and present them to CD8+ T lymphocytes. Class I molecules consist of a transmembrane alpha chain and a small chain called the beta2 microglobulin. The alpha chain contains three extracellular domains, two of which fold together to form the peptide-binding cleft (alpha1 and alpha2), and one which has an Ig fold (alpha3). Peptide binding to class I molecules occurs in the endoplasmic reticulum (ER) and involves both chaperones and dedicated factors to assist in peptide loading. Class I MHC molecules are expressed on most nucleated cells.
Probab=96.92 E-value=0.0046 Score=51.35 Aligned_cols=67 Identities=18% Similarity=0.224 Sum_probs=41.7
Q ss_pred cccEEEEEEeeecCCcCeEEEEeeCCEEccccccccccCCeeecCCceEE---EeccCCCCCEEEEEEEEcCC
Q psy12060 694 HRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLE---ITNASFADAGEYECVVKSTV 763 (978)
Q Consensus 694 g~~~~l~C~~~~~p~~~~~~~W~~~g~~~~~~~~~~~~~~~~~~~~~~l~---i~~~~~~d~g~Y~c~a~n~~ 763 (978)
++.++|.|.+.+..++.+.+.|.++|..+..... . .......++++. ...+...+...|+|++.+..
T Consensus 14 ~~~~~L~C~a~gF~P~~i~v~W~~~g~~~~~~~~--~-~~~~~~~d~ty~~~s~l~v~~~~~~~ytC~V~H~~ 83 (93)
T cd07698 14 DGSLTLSCHATGFYPRDIEVTWLRDGEDSVDDVE--S-GEILPNGDGTYQLWVTLEVPPEDKARYSCRVEHSG 83 (93)
T ss_pred CCcEEEEEEEEEEeCCCcEEEEEECCEECccccc--c-cceEECCCCeEEEEEEEEECCCCCCEEEEEEEeCC
Confidence 6789999999998888899999999964322110 0 011111122222 22234457889999997654
No 386
>cd07696 IgC_CH3 CH3 domain (third constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH3: The third immunoglobulin constant domain (IgC) of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=96.91 E-value=0.0033 Score=52.14 Aligned_cols=70 Identities=10% Similarity=0.266 Sum_probs=38.9
Q ss_pred cCcEEEEEEeecC--CC-CeEEEEEcccccccccccccCCCCCCceEeecceEEEeCCCCCCCCeEEEEEEEeCc
Q psy12060 209 LNDITLSCYAGGY--PN-PSYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVEDRGSYHCKASNKF 280 (978)
Q Consensus 209 g~~~~l~C~~~g~--p~-~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~d~G~Y~C~a~n~~ 280 (978)
|+.++|.|.+.|. |. .+|+|+|||++..........+..+..+.. ...|.+... +.++.-.|.|.+.+..
T Consensus 14 ~~~~tLtC~v~gf~yP~~i~v~W~r~~~~~~~~~~~~~~~~~dgty~~-~s~l~v~~~-~w~~g~~ysC~V~H~~ 86 (96)
T cd07696 14 TKSVKLTCLVTNLTSPEGVNVTWTRGSGEPVKASIQPPESHNNATLSV-TSTLNVSTD-DWISGDTFQCKVTHPD 86 (96)
T ss_pred CCCeEEEEEEeCCCCCCCcEEEEEECCeEeeeEEecccccCCCCCEEE-EEEEEeCHH-HccCCCcEEEEEECCC
Confidence 5669999999987 54 489999997532111111111222222322 123434332 2234568999998764
No 387
>cd05768 IgC_CH4 CH4 domain (fourth constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH4: The fourth immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=96.88 E-value=0.0025 Score=53.73 Aligned_cols=35 Identities=17% Similarity=0.350 Sum_probs=29.6
Q ss_pred EEEccccEEEEEEeeecCCcCeEEEEeeCCEEccc
Q psy12060 690 TIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGN 724 (978)
Q Consensus 690 ~~~~g~~~~l~C~~~~~p~~~~~~~W~~~g~~~~~ 724 (978)
....+..++|.|.+.+..+..+.+.|+++|.++..
T Consensus 12 ~~~~~~~~tL~C~a~gFyP~~i~v~W~k~g~~~~~ 46 (102)
T cd05768 12 ELSLQETATLTCLVKGFSPSDIFVKWLQNGQPLSK 46 (102)
T ss_pred HhCcCCceEEEEEEeeEeCCCCEEEEEECCEECCc
Confidence 34456789999999998888999999999998754
No 388
>KOG1480|consensus
Probab=96.87 E-value=0.00034 Score=76.49 Aligned_cols=178 Identities=24% Similarity=0.354 Sum_probs=104.2
Q ss_pred eceeeccCCcccccCCCceeEEEEeecCC----CCeeEEeECCEECCCCCCCCCCCCcEEEecCEEEEEeCCCCCCC--e
Q psy12060 488 EPNFTIPLTDKHMDNQADLTWTCEAFGVP----DVTYSWFRNGELLNSETLPLEDQDRYFIQDNVLTIRYLNPERDP--A 561 (978)
Q Consensus 488 ~p~~~~~~~~~~~~~g~~~~l~C~~~~~p----~~~i~W~~~g~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~d~--G 561 (978)
.|.|...+.+..+..|.++.|.|.+...+ .+.-.|.++.+........ .....-...-.+.|.....++-. -
T Consensus 24 l~~~~~~p~~~yii~~~p~~l~c~a~~a~~i~~kc~~~wv~~~~~~~~~~~d--~tsg~~~~~~si~Isr~~v~~~~~~~ 101 (909)
T KOG1480|consen 24 LPHFTTEPKSAYIIKNKPLRLQCKANPATQIRFKCNSEWVHQSRHEKLEGTD--ETSGLGVREVSIDISRQQVETSGGPE 101 (909)
T ss_pred cceeeecCCccceecCCCccceecCCcccccccccChhhhcCccceeeeccC--cccceeEEeeeeeeehhhhhcccCcc
Confidence 35566677778888999999999976443 2233455543322111100 11111111223333333221111 1
Q ss_pred EE--EEEEEcCCCceeeEE-EEEEEEcCCccccCCCCcceeecCCCeEEEEEee-ccCCCCeeEEeeCCEEecCCCcEEE
Q psy12060 562 MY--QCRAKNQLKTRYSSA-QLRVLTLKPSFKKRPLESETYAGEGGNVTIFCNP-EAAPKPKFVWKKDGNIIGSGGRRKI 637 (978)
Q Consensus 562 ~Y--~C~a~n~~g~~~~~~-~l~v~~~~p~~~~~~~~~~~~~~~g~~~~l~C~~-~~~p~~~i~W~~~g~~~~~~~~~~~ 637 (978)
.| +|.|....|...... .+.+....-.+...+. ...|..+..+.|.|.. .+.|...++|++++..+..+.+...
T Consensus 102 d~~cQc~a~~~~g~~~s~~a~vr~ay~rk~f~~~p~--~q~V~~~s~~~l~cr~pe~~paae~~w~k~e~~~~pd~n~~~ 179 (909)
T KOG1480|consen 102 DYWCQCVAWSDDGTVKSRKATVRIAYLRKHFEQSPV--GQEVQEETTLQLPCRPPEGDPKAEVEWLKNEVVIDPDANVIR 179 (909)
T ss_pred ceeeeeeeecCCCcchhhhHHHHHHHHHHhhccChh--hheecccccccccccCcccchhhhhhccccCCCCCccccchh
Confidence 35 556776666322111 1111101112222222 2236778888898885 6777889999999998888777777
Q ss_pred eecCcEEEccccCCCCEEEEEEEEeCCceeee
Q psy12060 638 FENGNLLISPVSRDDSGIYSCTATNVHGMDES 669 (978)
Q Consensus 638 ~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~ 669 (978)
.....+.+..+...|.|+|+|+|.|-.+....
T Consensus 180 ~~d~~li~~~arlsd~~nytc~a~ni~~~r~~ 211 (909)
T KOG1480|consen 180 ASDHNLIISQARLSDSGNYTCEATNIVAKRKS 211 (909)
T ss_pred hhcCCccccchhhhhcccceeeeehhhccccc
Confidence 77888999999999999999999997766543
No 389
>cd04981 IgV_H Immunoglobulin (Ig) heavy chain (H), variable (V) domain. IgV_H: Immunoglobulin (Ig) heavy chain (H), variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which can associate with any of the heavy chains. This family includes alpha, gamma, delta, epsilon, and mu heavy chains.
Probab=96.86 E-value=0.01 Score=51.79 Aligned_cols=71 Identities=21% Similarity=0.309 Sum_probs=42.7
Q ss_pred cccCcEEEEEEeecCC--CCeEEEEEccc--ccccccccc-------cCCCCCCceEee--c--c--eEEEeCCCCCCCC
Q psy12060 207 SILNDITLSCYAGGYP--NPSYEWFKEDY--VQDRLVANL-------IDPLSDKRFTLS--G--G--NLIINDPRQVEDR 269 (978)
Q Consensus 207 ~~g~~~~l~C~~~g~p--~~~v~W~~~~~--~~~~~~~~~-------~~~~~~~~~~~~--~--~--~l~i~~~~~~~d~ 269 (978)
++|++|+|+|...+.- ...+.|||... ...-+.... .......|+... . . .|.|.++ +.+|+
T Consensus 10 ~~G~~vtL~C~~~~~~~~~~~~~WYkQ~~g~~p~~l~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~I~~~-~~~Ds 88 (117)
T cd04981 10 KPGQSLKLSCKASGFTFTSYGVNWVRQAPGKGLEWIGFINPGGGETYYADSVKGRFTITRDTSKSTVYLQLNSL-TPEDT 88 (117)
T ss_pred cCCCCEEEEEEEeCCCcccceEEEEEECCCCCcEEEEEEecCCCceEeCcccCCcEEEEEEccCCEEEEEECCC-CHHHC
Confidence 3467799999876433 35799999642 111010000 011122455432 1 2 6889897 99999
Q ss_pred eEEEEEEEe
Q psy12060 270 GSYHCKASN 278 (978)
Q Consensus 270 G~Y~C~a~n 278 (978)
|.|.|.+..
T Consensus 89 a~YyCa~~~ 97 (117)
T cd04981 89 AVYYCARGL 97 (117)
T ss_pred EEEEEEEEc
Confidence 999998864
No 390
>PHA02673 ORF109 EEV glycoprotein; Provisional
Probab=96.85 E-value=0.0016 Score=56.63 Aligned_cols=52 Identities=19% Similarity=0.358 Sum_probs=40.3
Q ss_pred cccccccceeccCeeEEEEccCCCCHHHHHHHhhhcCCeeeeeCChhhHHHHHHHh
Q psy12060 26 ELRCPQHWVQYRDSCYRFVKSPLKTRNDAKLNCKSLDSDLANVNDADEHGFIMYQL 81 (978)
Q Consensus 26 ~~~Cp~~w~~~~~~Cy~~~~~~~~~~~~A~~~C~~~~~~L~~i~~~~e~~~i~~~~ 81 (978)
...|.- ..++++||.+. .+ .+|+||...|..+|+.|-+..-.+...+|.+++
T Consensus 74 ~~tC~G--I~~~~~Cltl~-~p-~tf~eAn~~C~~~g~~LPs~~l~~~~pWL~dYL 125 (161)
T PHA02673 74 NRTCDG--INAGNKCLTLK-YP-DTWTNANERCKELGQRLPSPSINKKYPWLTDYL 125 (161)
T ss_pred cCcCCC--cccCCeeEEeC-CC-CcHHHHHHHHHhcCCcCCCCcccccCcHHHHHh
Confidence 345652 36699999999 65 799999999999999999866555445666665
No 391
>cd05712 Ig_Siglec_N Immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins). Ig_Siglec_N: immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins). Siglec refers to a structurally related protein family that specifically recognizes sialic acid in oligosaccharide chains of glycoproteins and glycolipids. Siglecs are type I transmembrane proteins, organized as an extracellular module composed of Ig-like domains (an N-terminal variable set of Ig-like carbohydrate recognition domains, and 1 to 16 constant Ig-like domains), followed by transmembrane and short cytoplasmic domains. Human siglecs are classified into two subgroups, one subgroup is comprised of sialoadhesin (Siglec-1), CD22 (Siglec-2), and MAG, the other subgroup is comprised of CD33-related Siglecs which include CD33 (Siglec-3) and human Siglecs 5-11.
Probab=96.85 E-value=0.0093 Score=52.35 Aligned_cols=72 Identities=24% Similarity=0.286 Sum_probs=43.6
Q ss_pred cccCcEEEEEEeecCC------CCeEEEEEcccccc--cccc-----cccCCCCCCceEee------cceEEEeCCCCCC
Q psy12060 207 SILNDITLSCYAGGYP------NPSYEWFKEDYVQD--RLVA-----NLIDPLSDKRFTLS------GGNLIINDPRQVE 267 (978)
Q Consensus 207 ~~g~~~~l~C~~~g~p------~~~v~W~~~~~~~~--~~~~-----~~~~~~~~~~~~~~------~~~l~i~~~~~~~ 267 (978)
.+|++|+|.|.....+ ...+.|||....-. .... .......+.|+.+. +.+|.|.++ +.+
T Consensus 12 ~~G~~VtL~C~f~~~~~~~~~~~~~~~Wykq~~g~~~~~~~~~~~~~~~~~~~f~gR~~~~~~~~~~~~sL~I~~l-~~~ 90 (119)
T cd05712 12 QEGLCVLIPCSFSYPADWPVSNGVHGIWYKGHPYPKNRPPVATNNRSRLVHESTRGRFRLLGDLGKKNCSLLISDA-QPE 90 (119)
T ss_pred eccccEEEEEEeeCcccccCCCceEEEEEeCCCCCCCCCcEEEcCCCccccccccccEEEecCCCCCEEEEEEccC-Chh
Confidence 3467799999875221 24699999753110 0000 01111223455441 237999998 999
Q ss_pred CCeEEEEEEEeC
Q psy12060 268 DRGSYHCKASNK 279 (978)
Q Consensus 268 d~G~Y~C~a~n~ 279 (978)
|+|.|.|.+...
T Consensus 91 Dsg~Y~C~~~~~ 102 (119)
T cd05712 91 DSGKYFFRVELG 102 (119)
T ss_pred hCeEEEEEEEcC
Confidence 999999988764
No 392
>cd07699 IgC_L Immunoglobulin Constant domain. IgC_L: Immunoglobulin (Ig) light chain constant (C) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.
Probab=96.84 E-value=0.0037 Score=52.57 Aligned_cols=71 Identities=13% Similarity=0.179 Sum_probs=45.1
Q ss_pred EEEccccEEEEEEeeecCCcCeEEEEeeCCEEccccccccccCCeeecCCc------eEEEeccCCCCCEEEEEEEEcCC
Q psy12060 690 TIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGG------LLEITNASFADAGEYECVVKSTV 763 (978)
Q Consensus 690 ~~~~g~~~~l~C~~~~~p~~~~~~~W~~~g~~~~~~~~~~~~~~~~~~~~~------~l~i~~~~~~d~g~Y~c~a~n~~ 763 (978)
....++.++|.|.+.+..+..+.+.|+++|..+..... ........++ .|.+......+...|+|+|....
T Consensus 13 ~~~~~~~~~L~C~~~gfyP~~i~v~W~~~g~~~~~~~~---~~~~~~~~dgty~~~s~L~v~~~~w~~~~~~sC~V~H~~ 89 (100)
T cd07699 13 ELEKSGKATLVCLINDFYPGFATVQWKVDGATVSSGVQ---TSTTEQQSDNTYSLSSYLTLTKSDWNKHKVYTCEVTHEG 89 (100)
T ss_pred HHccCCCcEEEEEEEeEECCCCEEEEEECCEECcccEe---ccccEECCCCCEEEEEEEEEcHHHhCCCCeEEEEEEecC
Confidence 34456779999999998877899999999998853211 0111111122 33343333344678999997643
No 393
>PF01108 Tissue_fac: Tissue factor; PDB: 3OG4_B 3OG6_B 1FYH_E 1FG9_D 1JRH_I 3DGC_R 3DLQ_R 1LQS_R 1Y6M_R 1J7V_R ....
Probab=96.82 E-value=0.0035 Score=53.63 Aligned_cols=85 Identities=16% Similarity=0.278 Sum_probs=59.1
Q ss_pred CCCCCCCceeecccccCcEEEEEEeCCCCCCCCCcceEEEEEEecCCccceeeeeeeccceeEEEEEcCCC--CceeeEE
Q psy12060 884 KPYQAPSRIGGGGGKIGDLSISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETLKEYGNVGIAVVRIPSE--FYYTEYE 961 (978)
Q Consensus 884 ~P~~~P~~~~~~~~~~~si~v~W~~p~~~~~~g~i~~Y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L--~p~t~Y~ 961 (978)
.+..+|.|+++...+-. ..|+|++++ ....-..|.|+|+..+...|+....-. +.+.....|+.. .+...|.
T Consensus 20 ~~lp~P~nv~~~s~nf~-~iL~W~~~~---~~~~~~~ytVq~~~~~~~~W~~v~~C~--~i~~~~Cdlt~~~~~~~~~Y~ 93 (107)
T PF01108_consen 20 ASLPAPQNVTVDSVNFK-HILRWDPGP---GSPPNVTYTVQYKKYGSSSWKDVPGCQ--NITETSCDLTDETSDPSESYY 93 (107)
T ss_dssp SSGSSCEEEEEEEETTE-EEEEEEEST---TSSSTEEEEEEEEESSTSCEEEECCEE--EESSSEEECTTCCTTTTSEEE
T ss_pred ccCCCCCeeEEEEECCc-eEEEeCCCC---CCCCCeEEEEEEEecCCcceeecccee--cccccceeCcchhhcCcCCEE
Confidence 33458999999877654 889999933 223457899999977788898762222 122234667663 3788999
Q ss_pred EEEEEecCCCCCC
Q psy12060 962 VKVQAINDVGPGP 974 (978)
Q Consensus 962 ~~V~A~n~~G~gp 974 (978)
+||+|.-....|+
T Consensus 94 ~rV~A~~~~~~S~ 106 (107)
T PF01108_consen 94 ARVRAEVGNQTSD 106 (107)
T ss_dssp EEEEEEETTEEEE
T ss_pred EEEEEEeCCccCC
Confidence 9999998765543
No 394
>cd07696 IgC_CH3 CH3 domain (third constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH3: The third immunoglobulin constant domain (IgC) of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=96.77 E-value=0.0073 Score=50.13 Aligned_cols=78 Identities=15% Similarity=0.243 Sum_probs=45.0
Q ss_pred cCCcccccCCCceeEEEEeecC--C-CCeeEEeECCEECCCCC--CCCCCCCcEEEecCEEEEEeCCCCCCCeEEEEEEE
Q psy12060 494 PLTDKHMDNQADLTWTCEAFGV--P-DVTYSWFRNGELLNSET--LPLEDQDRYFIQDNVLTIRYLNPERDPAMYQCRAK 568 (978)
Q Consensus 494 ~~~~~~~~~g~~~~l~C~~~~~--p-~~~i~W~~~g~~~~~~~--~~~~~~~~~~~~~~~l~i~~~~~~~d~G~Y~C~a~ 568 (978)
+|....+..|+.++|.|.+.|+ | ...++|.|||....... ....+.+..+.....|.+..-.- .+.-.|+|.+.
T Consensus 5 pPs~~~l~~~~~~tLtC~v~gf~yP~~i~v~W~r~~~~~~~~~~~~~~~~~dgty~~~s~l~v~~~~w-~~g~~ysC~V~ 83 (96)
T cd07696 5 PPSPKQLLLTKSVKLTCLVTNLTSPEGVNVTWTRGSGEPVKASIQPPESHNNATLSVTSTLNVSTDDW-ISGDTFQCKVT 83 (96)
T ss_pred CcCHHHhccCCCeEEEEEEeCCCCCCCcEEEEEECCeEeeeEEecccccCCCCCEEEEEEEEeCHHHc-cCCCcEEEEEE
Confidence 3444557779999999999988 4 56889999874332110 00111122222223444443221 23458999999
Q ss_pred cCCC
Q psy12060 569 NQLK 572 (978)
Q Consensus 569 n~~g 572 (978)
+...
T Consensus 84 H~~l 87 (96)
T cd07696 84 HPDL 87 (96)
T ss_pred CCCC
Confidence 8653
No 395
>cd07697 IgC_TCR_gamma T cell receptor (TCR) gamma chain constant immunoglobulin domain. IgC_TCR_gamma; immunoglobulin (Ig) constant (C) domain of the gamma chain of gamma-delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha-beta TCRs but a small subset contain gamma-delta TCRs. Alpha-beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma-delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma-delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds.
Probab=96.77 E-value=0.0091 Score=49.33 Aligned_cols=72 Identities=15% Similarity=0.207 Sum_probs=43.8
Q ss_pred CcccccCCCceeEEEEeecC-C-CCeeEEeECCEECCCCCC---CCCCCCcEEEecCEEEEEeCCCCCCCeEEEEEEEcC
Q psy12060 496 TDKHMDNQADLTWTCEAFGV-P-DVTYSWFRNGELLNSETL---PLEDQDRYFIQDNVLTIRYLNPERDPAMYQCRAKNQ 570 (978)
Q Consensus 496 ~~~~~~~g~~~~l~C~~~~~-p-~~~i~W~~~g~~~~~~~~---~~~~~~~~~~~~~~l~i~~~~~~~d~G~Y~C~a~n~ 570 (978)
....+..++.++|.|.+.|+ | ...++|.+||..+..+.. ...+.+ .+.....|.+..- +....|+|.+.+.
T Consensus 9 s~~e~~~~~~~tL~C~a~gFyP~~I~v~W~kng~~~~~~~~~~~~~~~~d-ty~~~S~L~vt~~---~~~~~ysC~V~H~ 84 (96)
T cd07697 9 SKKEIEKQGQGIYLCLLENFFPDVIQVHWREGNSPSILGSQKSEKDKDND-VYSTTSWLTVTKD---SLGKKFRCIYKHE 84 (96)
T ss_pred CHHHHccCCCEEEEEEEEEEeCCCeEEEEEECCEECcCCeEeccEecCCC-EEEEEEEEEECch---hCCCeEEEEEEEC
Confidence 33445557789999999986 4 678999999998754311 011222 2223334544421 2344699999874
Q ss_pred C
Q psy12060 571 L 571 (978)
Q Consensus 571 ~ 571 (978)
.
T Consensus 85 g 85 (96)
T cd07697 85 G 85 (96)
T ss_pred C
Confidence 3
No 396
>PRK14081 triple tyrosine motif-containing protein; Provisional
Probab=96.73 E-value=1.6 Score=49.64 Aligned_cols=425 Identities=14% Similarity=0.176 Sum_probs=221.3
Q ss_pred eeecceeeE--EEEEeecccccc-cCCceeEEEccCCCccccccCCCCCCCCCCCCCCCCcEEEEEEEeec--CCCeeEE
Q psy12060 359 EQIDAGNYS--CNVQSKVSDTGR-NGPFFPLKVFPHSNFQQLKFPNNFPKTFPEAPKAGDKVRLECVAFGY--PVPSYNW 433 (978)
Q Consensus 359 ~~~d~G~Y~--C~~~n~~~~~~~-~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~v~~G~~~~l~C~~~g~--p~~~v~W 433 (978)
+...+|.|. |.+.+......- +...+..+|.+.+.+....+. ..+..+..|+.+.|...+.+. -..-++.
T Consensus 153 t~~~~G~Y~ll~~~Kd~~S~~~fDD~~~v~y~Vk~~~~v~I~~F~-----~lns~~i~~~eI~f~~~a~~~~g~~~LYKF 227 (667)
T PRK14081 153 TANKPGKYELLVECKRIDSTKDFDDFKKVKFKVKEIDKVEITDFK-----CLNKELICDEELVFEVESVYEEDRTILYKF 227 (667)
T ss_pred EecCCCcEEEEEEEecCCCccccCcceEEEEEcccCcceEEEecc-----ccCcceecCcEEEEEEEEEeCCCceEEEEE
Confidence 557889887 555544332222 222345555554433222221 122345679999998655532 2234454
Q ss_pred EE---cCccCCCCceeeecccEEEeCCCCCCCCeEEE--EEEEeCCCc----eEEEEEEEEEe--eceeec--cCCcccc
Q psy12060 434 TR---RGSPLPRNAYFENFNRILTIPNVKVEDQGEYI--CRASNDRSA----LESSVTISIQA--EPNFTI--PLTDKHM 500 (978)
Q Consensus 434 ~~---~~~~l~~~~~~~~~~~~L~i~~~~~~d~G~Y~--C~a~n~~g~----~~~~~~l~V~~--~p~~~~--~~~~~~~ 500 (978)
.+ +|.....+.... ..++. -.+..+|.|+ |.+...... +.+.+...|.. ++.+.. .......
T Consensus 228 ~~i~~~G~~~~~qdYst--~n~~~---y~~~~~G~Y~i~~~VKD~~S~~eyDD~~~l~y~Vk~~~~vkI~~~~~d~~s~q 302 (667)
T PRK14081 228 VKIDSDGKQTCIQDYST--KNIVS---YKEKKSGDYKLLCLVKDMYSNNEFDDRAVLVYTVKPYKDIKIRNFTTDLSSPQ 302 (667)
T ss_pred EEECCCCCEEEecCccc--cceEE---EEeCCCccEEEEEEEeccCcccccccceEEEEEEecCCCcEEEEEEEcCCCCe
Confidence 44 332221111111 12232 2356899986 555543321 23344444432 233321 1122345
Q ss_pred cCCCceeEEEEeecCCCCeeEEeECCEECCCCCCCCCCCCcEEEecCEEEEEeCCCCCCCeEEEEEEEcCCC--c----e
Q psy12060 501 DNQADLTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQDNVLTIRYLNPERDPAMYQCRAKNQLK--T----R 574 (978)
Q Consensus 501 ~~g~~~~l~C~~~~~p~~~i~W~~~g~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~d~G~Y~C~a~n~~g--~----~ 574 (978)
..|+.+.|...+.|.-...+...-.|..+... . ....+.+... + ..+|.|.-.+.-... . .
T Consensus 303 l~g~~I~ika~a~GG~~llYrf~I~G~~~e~~--------~-Y~~~n~~~w~---P-~~~G~Y~I~v~VKDk~S~~eyD~ 369 (667)
T PRK14081 303 LTDTDIELKAVAEGGKELLYRFIIKGKESEDS--------G-YIRNNIYTWK---P-KIAGKYSITLWVKDISSKGEYED 369 (667)
T ss_pred ecCceEEEEEEecCCCceEEEEEECCcEEeec--------c-ccccceEEEe---e-CCCceEEEEEEEEcCcCcccccc
Confidence 78999999999998666666655556544311 1 1223344444 3 578999887653221 1 1
Q ss_pred eeEEEEEEEEc--CCc-cccCCCCcceeecCCCeEEEEEeeccCCCCeeEE--eeCCEEecCCCcEEEeecCcEEEcccc
Q psy12060 575 YSSAQLRVLTL--KPS-FKKRPLESETYAGEGGNVTIFCNPEAAPKPKFVW--KKDGNIIGSGGRRKIFENGNLLISPVS 649 (978)
Q Consensus 575 ~~~~~l~v~~~--~p~-~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~i~W--~~~g~~~~~~~~~~~~~~~~l~i~~~~ 649 (978)
.....+.+... .|. +.-...+.......|+++.+.|.+.+.-...+.. .++|..+... ....+..+.+ .
T Consensus 370 ~~~v~f~i~~~~~~p~~I~~vl~d~~~~~lvG~~i~i~v~a~gg~~~lY~f~ik~ng~~ve~~---~Y~~~~~~~f---~ 443 (667)
T PRK14081 370 KSSIDYTIEEKSKEPIKIEDVILDKGKHILKGEEIKIRVIAEGGTNLRYSFIIKKDGKEEEKI---DYGKNNWVNF---I 443 (667)
T ss_pred eEEEEEEEcccCCCCeEEEEEEECCCCceEeCCeEEEEEEecCCCeEEEEEEEEECCEEEEEe---ecccccEEEE---E
Confidence 22334444432 232 1111111222356799999999998875554432 3577765431 1112223444 3
Q ss_pred CCCCEEEEEEEE--eCCce----eeeeEEEEEEeC-Cceee--eCCCceEEEccccEEEEEEeeecCCcCeEEEEeeCCE
Q psy12060 650 RDDSGIYSCTAT--NVHGM----DESKGRLIVLHG-PSYYE--QLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGV 720 (978)
Q Consensus 650 ~~d~G~Y~C~a~--n~~g~----~~~~~~l~v~~~-p~~~~--~~~~~~~~~~g~~~~l~C~~~~~p~~~~~~~W~~~g~ 720 (978)
+.-+|.|+..+. +.... ....+.+.|... |..+. ..+.......|+.+++.|.+.+....-+.+.-+.||.
T Consensus 444 P~~~G~Y~IeV~vKdk~S~~~yD~~k~v~l~V~e~~P~~i~~il~~~~~~~~vg~~i~~~~~~~~~k~v~y~y~~~~NG~ 523 (667)
T PRK14081 444 PEEKGNYELEVRVKDKYSDKEYDAHTIVYIKVHEYIPAEIDYILLPVKEYYLVGDDIEIEVIIQNTKDVLIKYILKINGH 523 (667)
T ss_pred ECCCeeEEEEEEEecccCchhcccceEEEEEEeccCceeeeeEEecccccEEeCCEEEEEEEEeCCCeEEEEEEEEECCE
Confidence 477899997655 43322 234457777653 43222 2344556788999999999988765556666667777
Q ss_pred EccccccccccCCeeecCCceEEEeccCCCCCEEEEEEE--EcCCCc----eeeeEEEEEcCCCCCCCceEEEEeeC---
Q psy12060 721 RIGNMDLNELETPNINIDGGLLEITNASFADAGEYECVV--KSTVGK----ISTKTTVIVEGPPGLPGGVQVVEVHK--- 791 (978)
Q Consensus 721 ~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~c~a--~n~~G~----~s~~~~l~v~~~P~~P~~~~~~~~~~--- 791 (978)
.+.... .. ....+++. +.-+|.|+..| .|.... ....+.+.|.. +.|+.+..+.....
T Consensus 524 ~v~~t~--------Ys-~~~~ysf~---P~~~GkY~I~V~aKn~~s~~~~D~~k~v~~~V~e-~~pi~nt~~~~~~~~~~ 590 (667)
T PRK14081 524 KVEETD--------YI-KNKKYKFI---PKCSGKYTIEVLAKNIKSTEEYDSKKEVKFYVRE-ALPITNTKIKTSKKKFK 590 (667)
T ss_pred EEEEee--------cc-ccceEEEe---ecCCceEEEEEEEcccccccccccceEEEEEEcC-CCCceeeEEEeecceEE
Confidence 653211 11 23344444 56789999776 444432 33556677764 44455554322211
Q ss_pred CeeEEEeecCCCCCCCceeEEEEEeeccccCceEecc
Q psy12060 792 TSATIQWTDGATNGRPITHYKIIARTNWNSTWFNVSE 828 (978)
Q Consensus 792 ~~v~l~W~~p~~~~~~i~~Y~v~~~~~~~~~w~~~~~ 828 (978)
-...++|..-..+|... -|+.+... .+.|..+..
T Consensus 591 ~n~~~t~~~~~~gg~~v-~Yef~v~~--~g~w~~vq~ 624 (667)
T PRK14081 591 CNEEVTFSVKSEGGKDV-CYEFYIME--KGEWKLVQK 624 (667)
T ss_pred cCCeEEEEEEccCCCcE-EEEEEEEE--CCcEEEEee
Confidence 23455666555555543 57666554 567877654
No 397
>PRK14081 triple tyrosine motif-containing protein; Provisional
Probab=96.71 E-value=1.6 Score=49.53 Aligned_cols=339 Identities=15% Similarity=0.198 Sum_probs=185.2
Q ss_pred EEEeeeeeecceeeE--EEEEeeccccccc-CCceeEEEccCC--CccccccCCCCCCCCCCCCCCCCcEEEEEEEeecC
Q psy12060 353 LYFSALEQIDAGNYS--CNVQSKVSDTGRN-GPFFPLKVFPHS--NFQQLKFPNNFPKTFPEAPKAGDKVRLECVAFGYP 427 (978)
Q Consensus 353 L~i~~~~~~d~G~Y~--C~~~n~~~~~~~~-~~~~~l~V~~~~--~~~~~~~~~~~~~~~~~~v~~G~~~~l~C~~~g~p 427 (978)
-.+-+-.+..+|.|+ |.+.+......-. ...+.-+|.... ....+... .......|+.+.|.+.+.|.-
T Consensus 245 ~n~~~y~~~~~G~Y~i~~~VKD~~S~~eyDD~~~l~y~Vk~~~~vkI~~~~~d------~~s~ql~g~~I~ika~a~GG~ 318 (667)
T PRK14081 245 KNIVSYKEKKSGDYKLLCLVKDMYSNNEFDDRAVLVYTVKPYKDIKIRNFTTD------LSSPQLTDTDIELKAVAEGGK 318 (667)
T ss_pred cceEEEEeCCCccEEEEEEEeccCcccccccceEEEEEEecCCCcEEEEEEEc------CCCCeecCceEEEEEEecCCC
Confidence 334455677899996 5555544322221 222344443222 11111111 122346899999999999755
Q ss_pred CCeeEEEEcCccCCCCceeeecccEEEeCCCCCCCCeEEEEEEEeCCC------ceEEEEEEEEEee---ce-ee--ccC
Q psy12060 428 VPSYNWTRRGSPLPRNAYFENFNRILTIPNVKVEDQGEYICRASNDRS------ALESSVTISIQAE---PN-FT--IPL 495 (978)
Q Consensus 428 ~~~v~W~~~~~~l~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g------~~~~~~~l~V~~~---p~-~~--~~~ 495 (978)
.-.++..-+|..+....... ...+.. .+..+|.|.-.+.-... .+...+...|... |. +. +.+
T Consensus 319 ~llYrf~I~G~~~e~~~Y~~--~n~~~w---~P~~~G~Y~I~v~VKDk~S~~eyD~~~~v~f~i~~~~~~p~~I~~vl~d 393 (667)
T PRK14081 319 ELLYRFIIKGKESEDSGYIR--NNIYTW---KPKIAGKYSITLWVKDISSKGEYEDKSSIDYTIEEKSKEPIKIEDVILD 393 (667)
T ss_pred ceEEEEEECCcEEeeccccc--cceEEE---eeCCCceEEEEEEEEcCcCcccccceEEEEEEEcccCCCCeEEEEEEEC
Confidence 55666555565543222211 122333 34569999988775321 1345566666654 42 22 122
Q ss_pred CcccccCCCceeEEEEeecCCCCeeE--EeECCEECCCCCCCCCCCCcEEEecCEEEEEeCCCCCCCeEEEEEEE--cCC
Q psy12060 496 TDKHMDNQADLTWTCEAFGVPDVTYS--WFRNGELLNSETLPLEDQDRYFIQDNVLTIRYLNPERDPAMYQCRAK--NQL 571 (978)
Q Consensus 496 ~~~~~~~g~~~~l~C~~~~~p~~~i~--W~~~g~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~d~G~Y~C~a~--n~~ 571 (978)
....+..|+++.+.|.+.|.-...+. -.++|..+... -....+.+.+. + .-+|.|+-.+. +..
T Consensus 394 ~~~~~lvG~~i~i~v~a~gg~~~lY~f~ik~ng~~ve~~---------~Y~~~~~~~f~---P-~~~G~Y~IeV~vKdk~ 460 (667)
T PRK14081 394 KGKHILKGEEIKIRVIAEGGTNLRYSFIIKKDGKEEEKI---------DYGKNNWVNFI---P-EEKGNYELEVRVKDKY 460 (667)
T ss_pred CCCceEeCCeEEEEEEecCCCeEEEEEEEEECCEEEEEe---------ecccccEEEEE---E-CCCeeEEEEEEEeccc
Confidence 33467789999999999875444433 34578766521 11223344444 3 67899988765 332
Q ss_pred Cc----eeeEEEEEEEEcCCc-cccCCCCcceeecCCCeEEEEEeeccCCCCeeE--EeeCCEEecCCCcEEEeecCcEE
Q psy12060 572 KT----RYSSAQLRVLTLKPS-FKKRPLESETYAGEGGNVTIFCNPEAAPKPKFV--WKKDGNIIGSGGRRKIFENGNLL 644 (978)
Q Consensus 572 g~----~~~~~~l~v~~~~p~-~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~i~--W~~~g~~~~~~~~~~~~~~~~l~ 644 (978)
.. ......+.|....|. +.....+.......|+.+++.|.+++.-...+. -..+|....... ......+.
T Consensus 461 S~~~yD~~k~v~l~V~e~~P~~i~~il~~~~~~~~vg~~i~~~~~~~~~k~v~y~y~~~~NG~~v~~t~---Ys~~~~ys 537 (667)
T PRK14081 461 SDKEYDAHTIVYIKVHEYIPAEIDYILLPVKEYYLVGDDIEIEVIIQNTKDVLIKYILKINGHKVEETD---YIKNKKYK 537 (667)
T ss_pred CchhcccceEEEEEEeccCceeeeeEEecccccEEeCCEEEEEEEEeCCCeEEEEEEEEECCEEEEEee---ccccceEE
Confidence 22 234556777665565 222122223335689999999999886544333 334565442211 11233355
Q ss_pred EccccCCCCEEEEEEEE--eCCce----eeeeEEEEEEeCCceee--eCCCceEEEccccEEEEEEeeecCCcCeEEEEe
Q psy12060 645 ISPVSRDDSGIYSCTAT--NVHGM----DESKGRLIVLHGPSYYE--QLPPKITIAAHRNLQLRCSAHTEELLDVAYIWT 716 (978)
Q Consensus 645 i~~~~~~d~G~Y~C~a~--n~~g~----~~~~~~l~v~~~p~~~~--~~~~~~~~~~g~~~~l~C~~~~~p~~~~~~~W~ 716 (978)
+. +..+|.|+..+. |.... ....+.+.|..+.++.. ..........+..+++.-.+.|......+|.-+
T Consensus 538 f~---P~~~GkY~I~V~aKn~~s~~~~D~~k~v~~~V~e~~pi~nt~~~~~~~~~~~n~~~t~~~~~~gg~~v~Yef~v~ 614 (667)
T PRK14081 538 FI---PKCSGKYTIEVLAKNIKSTEEYDSKKEVKFYVREALPITNTKIKTSKKKFKCNEEVTFSVKSEGGKDVCYEFYIM 614 (667)
T ss_pred Ee---ecCCceEEEEEEEcccccccccccceEEEEEEcCCCCceeeEEEeecceEEcCCeEEEEEEccCCCcEEEEEEEE
Confidence 54 456899997665 33222 23345677766543322 123344667788888888877766555666556
Q ss_pred eCCEE
Q psy12060 717 HNGVR 721 (978)
Q Consensus 717 ~~g~~ 721 (978)
.+|..
T Consensus 615 ~~g~w 619 (667)
T PRK14081 615 EKGEW 619 (667)
T ss_pred ECCcE
Confidence 66643
No 398
>PF10179 DUF2369: Uncharacterised conserved protein (DUF2369); InterPro: IPR019326 This is a proline-rich region of a group of proteins found from plants to fungi. The function is largely unknown, although the entry contains Fibronectin type-III domain-containing protein C4orf31, which promotes matrix assembly and cell adhesiveness.
Probab=96.68 E-value=0.84 Score=46.30 Aligned_cols=129 Identities=16% Similarity=0.145 Sum_probs=76.5
Q ss_pred ecCCceeeEEeeccCCCceeEEEEEEecCCccCCCCCCCCCCCCCCCCC--CCCCCceeecc----cccCcEEEEEEeCC
Q psy12060 837 RYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPSPQYNTPADKP--YQAPSRIGGGG----GKIGDLSISWEPLP 910 (978)
Q Consensus 837 ~~~~~~~~~~~~~L~p~~~Y~~~v~A~N~~G~g~~s~~~~~~~t~~~~P--~~~P~~~~~~~----~~~~si~v~W~~p~ 910 (978)
.+.+...+.+.+ +.|+..|.+++.+.|.... ..+.-+...+|.+... |.-|.+.++.. .+-++++|.|.+-+
T Consensus 123 ~v~~~~~f~l~~-~~~g~~Yliri~~~~~~e~-~~~~kV~aast~~~~~~~P~LP~d~~Ik~f~~lrtC~SvTIAW~~s~ 200 (300)
T PF10179_consen 123 NVEGLRHFRLSG-VKPGERYLIRIQISNSDEG-PSTFKVQAASTNPSKQPYPQLPDDTSIKEFNKLRTCNSVTIAWLGSP 200 (300)
T ss_pred cccceEEEEECC-CCCCCeEEEEEEccCCCCC-ceEEEEEEecCCcccCCCCCCCCCCceeEEcCCcccceEEEEEecCC
Confidence 344667889999 9999999999988775442 2111110023332211 24566666533 44589999999822
Q ss_pred CCCCCCCcceEEEEEEecCCc----------------------cceeeeeeec------cceeEEEEEcCCCCceeeEEE
Q psy12060 911 REKQNAPNIYYKIFWRKKNDT----------------------EFQSETLKEY------GNVGIAVVRIPSEFYYTEYEV 962 (978)
Q Consensus 911 ~~~~~g~i~~Y~i~~~~~~~~----------------------~~~~~~~~~~------~~~~~~~~~l~~L~p~t~Y~~ 962 (978)
+.. ..|=|+.++.... +|..+..... ........+|.+|+||+.|-|
T Consensus 201 --d~~---~kYCvy~~~~~~~~~~~~~~~~~n~C~~~~sr~k~e~v~Ck~~~~~n~~~~~~~~v~tetI~~L~PG~~Yl~ 275 (300)
T PF10179_consen 201 --DRS---IKYCVYRREEHSNYQERSVSRMPNQCLGPESRKKSEKVLCKYFHSPNSSEDPQRAVTTETIKGLKPGTTYLF 275 (300)
T ss_pred --CCC---ceEEEEEEEecCchhhhhhcccCccCCCCCccccceEEEEEEEcCCccccccccccceeecccCCCCcEEEE
Confidence 221 5788877765422 1112211111 111223456999999999999
Q ss_pred EEEEecCCCC
Q psy12060 963 KVQAINDVGP 972 (978)
Q Consensus 963 ~V~A~n~~G~ 972 (978)
.|.|.=..|.
T Consensus 276 dV~~~~~~G~ 285 (300)
T PF10179_consen 276 DVYVNGPSGQ 285 (300)
T ss_pred EEEEecCCCc
Confidence 9999876654
No 399
>cd05770 IgC_beta2m Class I major histocompatibility complex (MHC) beta2-microglobulin. IgC_beta2m: Immunoglobulin-like domain in beta2-Microglobulin (beta2m). Beta2m is the non-covalently bound light chain of the human class I major histocompatibility complex (MHC-I). Beta2m is structured as a beta-sandwich domain composed of two facing beta-sheets (four stranded and three stranded), that is typical of the C-type immunoglobulin superfamily. This structure is stabilized by an intramolecular disulfide bridge connecting two Cys residues in the facing beta -sheets. In vivo, MHC-I continuously exposes beta2m on the cell surface, where it may be released to plasmatic fluids, transported to the kidneys, degraded and then excreted.
Probab=96.66 E-value=0.01 Score=48.74 Aligned_cols=66 Identities=17% Similarity=0.150 Sum_probs=44.0
Q ss_pred ccccEEEEEEeeecCCcCeEEEEeeCCEEccccccccccCCeeecCCceEEEe---ccCCCCCEEEEEEEEcC
Q psy12060 693 AHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEIT---NASFADAGEYECVVKST 762 (978)
Q Consensus 693 ~g~~~~l~C~~~~~p~~~~~~~W~~~g~~~~~~~~~~~~~~~~~~~~~~l~i~---~~~~~d~g~Y~c~a~n~ 762 (978)
.|...+|.|.+.+.-++.+.+.|++||..+. .. .........+.++.+. .+...+...|+|++.-.
T Consensus 14 ~g~~~~L~C~a~gFyP~~i~v~W~~dg~~~~-~~---~~~~~~p~~d~tyq~~s~l~~~~~~~~~ysC~V~H~ 82 (93)
T cd05770 14 NGKPNVLNCYVTGFHPPDIEIRLLKNGVKIP-KV---EQSDLSFSKDWTFYLLKSTEFTPTKGDEYACRVRHN 82 (93)
T ss_pred CCCceEEEEEEEEEeCCCCEEEEEECCEECC-Cc---EECcEEECCCCCEEEEEEEEECCCCCCeEEEEEEEC
Confidence 4566789999999988999999999999876 21 1111222223333332 23456777899999653
No 400
>cd04981 IgV_H Immunoglobulin (Ig) heavy chain (H), variable (V) domain. IgV_H: Immunoglobulin (Ig) heavy chain (H), variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which can associate with any of the heavy chains. This family includes alpha, gamma, delta, epsilon, and mu heavy chains.
Probab=96.62 E-value=0.0069 Score=52.84 Aligned_cols=64 Identities=25% Similarity=0.448 Sum_probs=43.0
Q ss_pred CCCCCCCcEEEEEEEeecC--CCeeEEEEcCc--cC------C---C--------Cceeee---c---ccEEEeCCCCCC
Q psy12060 409 EAPKAGDKVRLECVAFGYP--VPSYNWTRRGS--PL------P---R--------NAYFEN---F---NRILTIPNVKVE 461 (978)
Q Consensus 409 ~~v~~G~~~~l~C~~~g~p--~~~v~W~~~~~--~l------~---~--------~~~~~~---~---~~~L~i~~~~~~ 461 (978)
..+.+|++++|.|...+.. ...+.|||... .+ . . ..++.. . ...|.|.+++.+
T Consensus 7 ~~v~~G~~vtL~C~~~~~~~~~~~~~WYkQ~~g~~p~~l~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~I~~~~~~ 86 (117)
T cd04981 7 GLVKPGQSLKLSCKASGFTFTSYGVNWVRQAPGKGLEWIGFINPGGGETYYADSVKGRFTITRDTSKSTVYLQLNSLTPE 86 (117)
T ss_pred eEEcCCCCEEEEEEEeCCCcccceEEEEEECCCCCcEEEEEEecCCCceEeCcccCCcEEEEEEccCCEEEEEECCCCHH
Confidence 4567999999999876432 34699998432 11 0 0 011111 1 126999999999
Q ss_pred CCeEEEEEEEe
Q psy12060 462 DQGEYICRASN 472 (978)
Q Consensus 462 d~G~Y~C~a~n 472 (978)
|+|.|.|.+..
T Consensus 87 Dsa~YyCa~~~ 97 (117)
T cd04981 87 DTAVYYCARGL 97 (117)
T ss_pred HCEEEEEEEEc
Confidence 99999998864
No 401
>PHA03093 EEV glycoprotein; Provisional
Probab=96.58 E-value=0.0037 Score=55.97 Aligned_cols=51 Identities=35% Similarity=0.557 Sum_probs=40.2
Q ss_pred cccccccceeccCeeEEEEccCCCCHHHHHHHhhhcCCeeeeeCChhhHHHHHHHh
Q psy12060 26 ELRCPQHWVQYRDSCYRFVKSPLKTRNDAKLNCKSLDSDLANVNDADEHGFIMYQL 81 (978)
Q Consensus 26 ~~~Cp~~w~~~~~~Cy~~~~~~~~~~~~A~~~C~~~~~~L~~i~~~~e~~~i~~~~ 81 (978)
...|.- ..++++||.|..++ .+|+||...|..+|+.|-+..-. ..+|.+++
T Consensus 98 ~~~C~G--I~~~~~C~~~~~ep-kTf~dA~~~C~~~g~~LPs~~l~--~~WL~dYL 148 (185)
T PHA03093 98 KESCKG--IVYDGSCYIFHSEP-KTFSDAKADCAKKSSTLPNSNLM--TTWLSDYL 148 (185)
T ss_pred cCcCCC--eecCCEeEEecCCC-cCHHHHHHHHHhcCCcCCCcchH--HHHHHHHh
Confidence 445653 36799999999997 99999999999999999984332 24777776
No 402
>cd05847 IgC_CH2_IgE CH2 domain (second constant Ig domain of the heavy chain) in immunoglobulin E (IgE). IgC_CH2_IgE: The second constant domain of the heavy chain of immunoglobulin E (IgE). The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma, and mu, all consisting of a variable domain (VH) and three (in alpha, delta, and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). The different classes of antibodies vary in their heavy chains; the IgE class has the epsilon type. This domain (Cepsilon2) of IgE is in place of the flexible hinge region found in IgG.
Probab=96.58 E-value=0.0079 Score=49.68 Aligned_cols=70 Identities=17% Similarity=0.256 Sum_probs=44.2
Q ss_pred ccccEEEEEEeeecCCcCeEEEEeeCCEEccccccccccCCeeecCCc------eEEEeccCCCCCEEEEEEEEcCCCc
Q psy12060 693 AHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGG------LLEITNASFADAGEYECVVKSTVGK 765 (978)
Q Consensus 693 ~g~~~~l~C~~~~~p~~~~~~~W~~~g~~~~~~~~~~~~~~~~~~~~~------~l~i~~~~~~d~g~Y~c~a~n~~G~ 765 (978)
..+.++|.|.+.+.-+..+.+.|.++|..+..... ........++ .|.+......+...|+|+|......
T Consensus 13 ~~~~~~L~C~a~gFyP~~I~vtW~~dg~~~~~~~~---~s~~~~~~~~Ty~~~S~L~v~~~~w~~~~~ytC~V~H~~~~ 88 (94)
T cd05847 13 TSETIQLLCLISGYTPGTIEVEWLVDGQVATLVAA---STAPQKEEGSTFSTTSELNVTQEDWKSGKTYTCKVTHQGTT 88 (94)
T ss_pred CCCCEEEEEEEEeEECCCCEEEEEECCEECcCcee---ecccEECCCCcEEEEEEEEEchHHhcCCCeEEEEEEECCee
Confidence 44668999999998888899999999998633211 0011111222 3434433334567899999775543
No 403
>cd05719 Ig2_PVR_like Second immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins. Ig2_PVR_like: domain similar to the second immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), these result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus
Probab=96.57 E-value=0.013 Score=48.40 Aligned_cols=71 Identities=18% Similarity=0.221 Sum_probs=43.3
Q ss_pred CCcEEEEEEEe-ecCCCeeEEEEcCccCCCCceeee------cccEEEeCCCCCCCCeEEEEEEEeCCC--ceEEEEEEE
Q psy12060 414 GDKVRLECVAF-GYPVPSYNWTRRGSPLPRNAYFEN------FNRILTIPNVKVEDQGEYICRASNDRS--ALESSVTIS 484 (978)
Q Consensus 414 G~~~~l~C~~~-g~p~~~v~W~~~~~~l~~~~~~~~------~~~~L~i~~~~~~d~G~Y~C~a~n~~g--~~~~~~~l~ 484 (978)
.....+.|.+. |.|.++|+|+++............ -.+.|.+.....+|.-.|+|++.+..- ....++.|.
T Consensus 15 ~~~~va~C~s~~gkP~a~ItW~~~~~~~~~~~~~~~~~g~~tv~S~l~~~p~~~d~G~~~tC~v~h~~l~~~~~~~~~L~ 94 (95)
T cd05719 15 EPVTVATCVSANGKPPATISWETTLGGEAETQSKENPNGTVTVTSEYRLVPSREANGKELTCVVSHPTLQEPQRFSVTLN 94 (95)
T ss_pred CccEEEEEECCCCcCCCEEEEEeCCCCcceeEeecCCCCCEEEEEEEEEecCHHHCCCEEEEEEeCcccCCCeEEEEEee
Confidence 34567899985 799999999997211111111111 123566765555566699999999763 344444444
No 404
>cd07697 IgC_TCR_gamma T cell receptor (TCR) gamma chain constant immunoglobulin domain. IgC_TCR_gamma; immunoglobulin (Ig) constant (C) domain of the gamma chain of gamma-delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha-beta TCRs but a small subset contain gamma-delta TCRs. Alpha-beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma-delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma-delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds.
Probab=96.53 E-value=0.0063 Score=50.26 Aligned_cols=34 Identities=9% Similarity=-0.079 Sum_probs=28.7
Q ss_pred EEccccEEEEEEeeecCCcCeEEEEeeCCEEccc
Q psy12060 691 IAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGN 724 (978)
Q Consensus 691 ~~~g~~~~l~C~~~~~p~~~~~~~W~~~g~~~~~ 724 (978)
...+..++|.|.+.+.-++.+++.|.++|..+..
T Consensus 13 ~~~~~~~tL~C~a~gFyP~~I~v~W~kng~~~~~ 46 (96)
T cd07697 13 IEKQGQGIYLCLLENFFPDVIQVHWREGNSPSIL 46 (96)
T ss_pred HccCCCEEEEEEEEEEeCCCeEEEEEECCEECcC
Confidence 3345678999999998888999999999998654
No 405
>smart00406 IGv Immunoglobulin V-Type.
Probab=96.52 E-value=0.0064 Score=49.09 Aligned_cols=64 Identities=30% Similarity=0.456 Sum_probs=39.2
Q ss_pred EEEEEEeecCCCC--eEEEEEcccc--ccccccc-----cc-CCCCCCceEee------cceEEEeCCCCCCCCeEEEEE
Q psy12060 212 ITLSCYAGGYPNP--SYEWFKEDYV--QDRLVAN-----LI-DPLSDKRFTLS------GGNLIINDPRQVEDRGSYHCK 275 (978)
Q Consensus 212 ~~l~C~~~g~p~~--~v~W~~~~~~--~~~~~~~-----~~-~~~~~~~~~~~------~~~l~i~~~~~~~d~G~Y~C~ 275 (978)
++|.|.+.....+ .+.|++.... ...+... .. .+....|+... ..+|.|.++ +.+|+|.|.|.
T Consensus 2 v~l~C~~~~~~~~~~~v~W~~~~~~~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~i~~~-~~~D~G~Y~C~ 80 (81)
T smart00406 2 VTLSCKASGFTFSSYYVSWVRQPPGKGLEWLGYIGSSGSTYYQQSYKGRVTISKDTSKNDVSLTISNL-RVEDTGTYYCA 80 (81)
T ss_pred EEEEEEEeccccceeEEEEEEeCCCCCeEEEEEEcCCCcEEECcccCCcEEEEecCcCCEEEEEEcCC-CHHHCEEEEEc
Confidence 7999998755543 8999997531 1111100 11 11223454432 136899998 99999999996
Q ss_pred E
Q psy12060 276 A 276 (978)
Q Consensus 276 a 276 (978)
+
T Consensus 81 v 81 (81)
T smart00406 81 V 81 (81)
T ss_pred C
Confidence 3
No 406
>cd04986 IgC_CH2 CH2 domain (second constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH2: The second immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=96.51 E-value=0.0093 Score=49.28 Aligned_cols=77 Identities=16% Similarity=0.202 Sum_probs=45.5
Q ss_pred cCCcccccCCCceeEEEEeecC--C-CCeeEEeECCEECCCC-CCCCCCCCcEEEecCEEEEEeCCCCCCCeEEEEEEEc
Q psy12060 494 PLTDKHMDNQADLTWTCEAFGV--P-DVTYSWFRNGELLNSE-TLPLEDQDRYFIQDNVLTIRYLNPERDPAMYQCRAKN 569 (978)
Q Consensus 494 ~~~~~~~~~g~~~~l~C~~~~~--p-~~~i~W~~~g~~~~~~-~~~~~~~~~~~~~~~~l~i~~~~~~~d~G~Y~C~a~n 569 (978)
+|....+..++.++|.|.+.++ | ...|+|.++|.. ... .....+.+..+...+.|.+..-. ......|+|.+.+
T Consensus 10 pPs~e~l~~~~~atLtClV~~f~~P~~i~V~W~~~g~~-~~~~t~~~~~~dgTys~~S~L~v~~~~-W~~g~~ytC~V~H 87 (99)
T cd04986 10 RPALEDLLLGSSASLTCTLSGLRDPEGAVFTWTPSGGK-EAVQTSAESDQCGCYSVSSVLPGCAEE-WNKGEPFACTVTH 87 (99)
T ss_pred CcChHHhCcCCccEEEEEEeccCCCCCeEEEEEECCcc-CcEEcCcccCCCCCEEEEEEEEeCHHH-hcCCCeEEEEEEC
Confidence 3444456678899999999984 3 578999999875 211 11111222333333456655322 1233469999998
Q ss_pred CCC
Q psy12060 570 QLK 572 (978)
Q Consensus 570 ~~g 572 (978)
...
T Consensus 88 ~~l 90 (99)
T cd04986 88 PEG 90 (99)
T ss_pred CCc
Confidence 643
No 407
>cd05769 IgC_TCR_beta T cell receptor (TCR) beta chain constant immunoglobulin domain. IgC_TCR_beta: Constant domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the beta chain. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The antigen binding site is formed by the variable domains of the alpha and beta chains, located at the N-terminus of each chain. Alpha/beta TCRs recognize antigens differently from gamma/delta TCRs.
Probab=96.51 E-value=0.011 Score=50.67 Aligned_cols=74 Identities=18% Similarity=0.303 Sum_probs=45.0
Q ss_pred EEEccccEEEEEEeeecCCcCeEEEEeeCCEEccccccccccCCeeecCCc------eEEEeccCCCC-CEEEEEEEEcC
Q psy12060 690 TIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGG------LLEITNASFAD-AGEYECVVKST 762 (978)
Q Consensus 690 ~~~~g~~~~l~C~~~~~p~~~~~~~W~~~g~~~~~~~~~~~~~~~~~~~~~------~l~i~~~~~~d-~g~Y~c~a~n~ 762 (978)
....++.++|.|.+.+.-+..+.+.|++||..+...... .......+++ .|+|......+ ...|+|.+.-.
T Consensus 14 e~~~~~~~tL~Cla~gFyP~~I~V~W~kng~~l~~g~~~--~~~~~~~~~gTYs~~S~L~v~~~~w~~~~~~ytC~V~H~ 91 (115)
T cd05769 14 EIRNKRKATLVCLATGFYPDHVSLSWKVNGKEVTDGVAT--DPQALRENTSTYSISSRLRVSATEWFNPRNTFTCIVQFY 91 (115)
T ss_pred HhccCCCcEEEEEEEeEeCCCcEEEEEECCEECCCCccc--ccceecCCCCeEEEEEEEEEChHHhccCCCeEEEEEEEe
Confidence 333567799999999988888999999999887642110 0011111112 34444332223 56899999765
Q ss_pred CCc
Q psy12060 763 VGK 765 (978)
Q Consensus 763 ~G~ 765 (978)
...
T Consensus 92 g~~ 94 (115)
T cd05769 92 GGT 94 (115)
T ss_pred CCc
Confidence 443
No 408
>cd07692 Ig_CD3_epsilon Immunoglobulin (Ig)-like domain of CD3 epsilon chain. Ig_CD3_epsilon; immunoglobulin (Ig)-like domain of CD3 epsilon chain. CD3 is a T cell surface receptor that is associated with alpha/beta T cell receptors (TCRs). The CD3 complex consists of one gamma, one delta, two epsilon, and two zeta chains. The CD3 subunits form heterodimers as gamma/epsilon, delta/epsilon, and zeta/zeta. The gamma, delta, and epsilon chains each contain an extracellular Ig domain, whereas the extracellular domains of the zeta chains are very small and have unknown structure. The CD3 domain participates in intracellular signalling once the TCR has bound an MHC/antigen complex.
Probab=96.49 E-value=0.006 Score=44.94 Aligned_cols=51 Identities=29% Similarity=0.487 Sum_probs=35.7
Q ss_pred cCCCeEEEEEeeccCCCCeeEEeeCCEEecCCCcEEEeecCcEEEccccCCCCEEEEEEEEe
Q psy12060 601 GEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTATN 662 (978)
Q Consensus 601 ~~g~~~~l~C~~~~~p~~~i~W~~~g~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n 662 (978)
..|.+|+|+|...+. .+.|.+++..+..... .+.+.+.. ++.|.|+|.+.+
T Consensus 5 isGTtVtlTCP~~~~---~i~W~~n~~~~~g~~~-------~~~~~~~~-e~~G~Y~C~~~~ 55 (65)
T cd07692 5 ISGTTVTVTCPLSGD---DIKWKKNDQVSQGSDE-------KYLSLNHF-SSSGYYHCTADN 55 (65)
T ss_pred EeccEEEEECCCCCC---CceEEeCCccCCCCCc-------eEEeeccC-CCCceEEEEeCC
Confidence 358999999975532 3999999866544222 24444444 889999999954
No 409
>cd07704 Ig2_Nectin-3-4_like Second immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3), nectin-4 (poliovirus receptor related protein 4) and similar proteins. Ig2_Nectin-3-4_like: domain similar to the second immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3) and nectin-4 (poliovirus receptor related protein 4). Nectin-3 and nectin-4 belong to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectin-2 and nectin-3 localize at Sertoli-spermatid junctions where they form heterophilic trans-interactions between the cells that are essential for the formation and maintenance of the junctions and for spermatid development. Nect
Probab=96.48 E-value=0.0077 Score=49.40 Aligned_cols=68 Identities=10% Similarity=0.243 Sum_probs=44.3
Q ss_pred eeeecccCeEE-EeCCCCCCCCceEEEecccccccccccceEEEeeCCc------EEEeeeeeecceeeEEEEEeecc
Q psy12060 305 EIGNQNWGKAM-FCDPPTNYPGVNYYWARDYFPNFVEEDKRVFVSYDGA------LYFSALEQIDAGNYSCNVQSKVS 375 (978)
Q Consensus 305 ~~~~~~~~~~l-~C~~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~------L~i~~~~~~d~G~Y~C~~~n~~~ 375 (978)
..+.+|..+.+ .|.+..|.|+++|+|+.+..... ........+|+ |.+.....+|.-.++|++.+...
T Consensus 11 ~~~~~g~~~~vA~C~sa~gkPaa~IsW~~~~~G~~---~~~~~~~~ngT~TV~S~~~l~p~r~d~G~~vtC~V~H~al 85 (97)
T cd07704 11 LLIDGGNGTTLAACCAAEGRPAADVTWETNVYGTS---ESHSQEHPNGTTTVTSEYIWVPSRHANGHPLTCVVSHPAL 85 (97)
T ss_pred eEeecCcceeEEEEEccCCccCCEeEEeCCCCCcc---ceeeecCCCCCEEEEEEEEEEeCHHHCCcEEEEEEeCccc
Confidence 34556777788 99999999999999998743311 11222223443 44444444566699999988753
No 410
>PF09067 EpoR_lig-bind: Erythropoietin receptor, ligand binding; InterPro: IPR015152 Members of this entry include the growth hormone and erythropoietin receptors. The latter interacts with erythropoietin (EPO), with subsequent initiation of the downstream chain of events associated with binding of EPO to the receptor, including EPO-induced erythroblast proliferation and differentiation through induction of the JAK2/STAT5 signalling cascade. The domain adopts a secondary structure composed of a short amino-terminal helix, followed by two beta-sandwich regions []. ; PDB: 3NCB_B 3NCF_B 3NCE_B 3N0P_B 3NCC_B 1BP3_B 3N06_B 3MZG_B 3D48_R 1F6F_C ....
Probab=96.40 E-value=0.019 Score=47.97 Aligned_cols=84 Identities=20% Similarity=0.382 Sum_probs=59.2
Q ss_pred CCCCCCceeecccccCcEEEEEEeCCCCCCCCCcceEEEEEEecCCccceeeeeeecc--ce-eE--EEEEcCCCCceee
Q psy12060 885 PYQAPSRIGGGGGKIGDLSISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETLKEYG--NV-GI--AVVRIPSEFYYTE 959 (978)
Q Consensus 885 P~~~P~~~~~~~~~~~si~v~W~~p~~~~~~g~i~~Y~i~~~~~~~~~~~~~~~~~~~--~~-~~--~~~~l~~L~p~t~ 959 (978)
|+..|.++.........++-.|++ .+.+|.+ +.|++.|...+ ..|+.+-..... +. .. -.|.-....-++.
T Consensus 7 ~p~~P~~~~C~S~~~etftC~W~~--g~~~~l~-~~y~L~Y~~~~-~~~~eCp~~~~~~~ns~~~~~C~F~~~~t~lf~~ 82 (104)
T PF09067_consen 7 PPEKPENLKCFSREMETFTCFWEP--GSEGNLP-TNYTLFYKKEG-EEWKECPDYSTSGPNSTVRHICYFPKSDTSLFVP 82 (104)
T ss_dssp HCCCCEEEEEEBSSSS-EEEEEEE--ESSSTST-CEEEEEEEETT-SEEEEESESSTTETTEEEEEEEEE-CCGCSSSSE
T ss_pred CCCCCccCccCCCCCCcEEEEeeC--CCCCCCC-CcEEEEEEeCC-CCCccCCCeEecCCCCceeEEEEcCCCCeEEEEE
Confidence 457889999998998999999999 5566543 44999999877 667766433221 11 11 2244446778999
Q ss_pred EEEEEEEecCCCC
Q psy12060 960 YEVKVQAINDVGP 972 (978)
Q Consensus 960 Y~~~V~A~n~~G~ 972 (978)
|.|+|.|.|..|.
T Consensus 83 y~i~V~a~~~~~~ 95 (104)
T PF09067_consen 83 YCIQVEATNALGS 95 (104)
T ss_dssp EEEEEEEEETTEE
T ss_pred EEEEEEeccCCCc
Confidence 9999999998763
No 411
>cd07704 Ig2_Nectin-3-4_like Second immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3), nectin-4 (poliovirus receptor related protein 4) and similar proteins. Ig2_Nectin-3-4_like: domain similar to the second immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3) and nectin-4 (poliovirus receptor related protein 4). Nectin-3 and nectin-4 belong to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectin-2 and nectin-3 localize at Sertoli-spermatid junctions where they form heterophilic trans-interactions between the cells that are essential for the formation and maintenance of the junctions and for spermatid development. Nect
Probab=96.40 E-value=0.02 Score=47.04 Aligned_cols=67 Identities=19% Similarity=0.280 Sum_probs=41.5
Q ss_pred cCcEEE-EEEe-ecCCCCeEEEEEcccccccccccccCCCCCCceEeecceEEEeCCCCCCCCeEEEEEEEeCc
Q psy12060 209 LNDITL-SCYA-GGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVEDRGSYHCKASNKF 280 (978)
Q Consensus 209 g~~~~l-~C~~-~g~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~d~G~Y~C~a~n~~ 280 (978)
|+.+.+ .|.+ .|+|+++|+|+.+.....+ .......++.+... ..|.+... +.+|.-.++|++.+..
T Consensus 16 g~~~~vA~C~sa~gkPaa~IsW~~~~~G~~~---~~~~~~~ngT~TV~-S~~~l~p~-r~d~G~~vtC~V~H~a 84 (97)
T cd07704 16 GNGTTLAACCAAEGRPAADVTWETNVYGTSE---SHSQEHPNGTTTVT-SEYIWVPS-RHANGHPLTCVVSHPA 84 (97)
T ss_pred CcceeEEEEEccCCccCCEeEEeCCCCCccc---eeeecCCCCCEEEE-EEEEEEeC-HHHCCcEEEEEEeCcc
Confidence 456788 9986 6999999999987532211 11111122333332 24555443 6778889999998764
No 412
>cd05712 Ig_Siglec_N Immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins). Ig_Siglec_N: immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins). Siglec refers to a structurally related protein family that specifically recognizes sialic acid in oligosaccharide chains of glycoproteins and glycolipids. Siglecs are type I transmembrane proteins, organized as an extracellular module composed of Ig-like domains (an N-terminal variable set of Ig-like carbohydrate recognition domains, and 1 to 16 constant Ig-like domains), followed by transmembrane and short cytoplasmic domains. Human siglecs are classified into two subgroups, one subgroup is comprised of sialoadhesin (Siglec-1), CD22 (Siglec-2), and MAG, the other subgroup is comprised of CD33-related Siglecs which include CD33 (Siglec-3) and human Siglecs 5-11.
Probab=96.39 E-value=0.016 Score=50.80 Aligned_cols=75 Identities=13% Similarity=0.166 Sum_probs=47.3
Q ss_pred CCcccccCCCceeEEEEeecCC------CCeeEEeECCE-----ECC---CCC--CCCCCCCcEEEe------cCEEEEE
Q psy12060 495 LTDKHMDNQADLTWTCEAFGVP------DVTYSWFRNGE-----LLN---SET--LPLEDQDRYFIQ------DNVLTIR 552 (978)
Q Consensus 495 ~~~~~~~~g~~~~l~C~~~~~p------~~~i~W~~~g~-----~~~---~~~--~~~~~~~~~~~~------~~~l~i~ 552 (978)
|....+.+|+.|+|.|...... ...+.|+|... .+. ... ......+|+.+. ...|.|.
T Consensus 6 P~~v~~~~G~~VtL~C~f~~~~~~~~~~~~~~~Wykq~~g~~~~~~~~~~~~~~~~~~~f~gR~~~~~~~~~~~~sL~I~ 85 (119)
T cd05712 6 PKSVSVQEGLCVLIPCSFSYPADWPVSNGVHGIWYKGHPYPKNRPPVATNNRSRLVHESTRGRFRLLGDLGKKNCSLLIS 85 (119)
T ss_pred CCEEEEeccccEEEEEEeeCcccccCCCceEEEEEeCCCCCCCCCcEEEcCCCccccccccccEEEecCCCCCEEEEEEc
Confidence 4445788999999999865321 35699998421 100 000 001122455442 1279999
Q ss_pred eCCCCCCCeEEEEEEEcC
Q psy12060 553 YLNPERDPAMYQCRAKNQ 570 (978)
Q Consensus 553 ~~~~~~d~G~Y~C~a~n~ 570 (978)
+++. +|+|.|.|.+...
T Consensus 86 ~l~~-~Dsg~Y~C~~~~~ 102 (119)
T cd05712 86 DAQP-EDSGKYFFRVELG 102 (119)
T ss_pred cCCh-hhCeEEEEEEEcC
Confidence 9997 9999999988763
No 413
>PHA02633 hypothetical protein; Provisional
Probab=96.33 E-value=0.01 Score=42.68 Aligned_cols=40 Identities=20% Similarity=0.235 Sum_probs=33.9
Q ss_pred ccEEEeCCCCCCCCeEEEEEEEeCCCceEEEEEEEEEeec
Q psy12060 450 NRILTIPNVKVEDQGEYICRASNDRSALESSVTISIQAEP 489 (978)
Q Consensus 450 ~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~p 489 (978)
+..|.|-++..+|+|.|.|..+|..-....++.|.|....
T Consensus 17 ~~nLwilpa~~sDSGiYiC~~rn~t~c~~~si~l~V~~~~ 56 (63)
T PHA02633 17 CNNMLILNPTQSDSGIYMCITKNETYSDMMKFDLCICLRI 56 (63)
T ss_pred cccEEEeccccccCcEEEEEEcCCCeeEEEEEEEEEeecc
Confidence 4568999999999999999999887777788888887654
No 414
>cd07689 Ig2_VCAM-1 Second immunoglobulin (Ig)-like domain of vascular endothelial cell adhesion molecule-1 (VCAM-1, CD106) and intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins. Ig2_ VCAM-1_like: domain similar to the second immunoglobulin (Ig)-like domain of vascular endothelial cell adhesion molecule-1 (VCAM-1, CD106). During the inflammation process, these molecules recruit leukocytes onto the vascular endothelium before extravasation to the injured tissues. The interaction of VCAM-1 binding to the beta1 integrin very late antigen (VLA-4) expressed by lymphocytes and monocytes mediates the adhesion of leucocytes to blood vessel walls, and regulates migration across the endothelium. During metastasis, some circulating cancer cells extravasate to a secondary site by a similar process. VCAM-1 may be involved in organ targeted tumor metastasis and may also act as host receptors for viruses and parasites. VCAM-1 contains seven Ig domains.
Probab=96.32 E-value=0.019 Score=46.64 Aligned_cols=64 Identities=23% Similarity=0.430 Sum_probs=43.7
Q ss_pred CCCCCCcEEEEEEEee-cCC--CeeEEEEcCccCCCCceee--------ecccEEEeCCCCCCCCe-EEEEEEEeCC
Q psy12060 410 APKAGDKVRLECVAFG-YPV--PSYNWTRRGSPLPRNAYFE--------NFNRILTIPNVKVEDQG-EYICRASNDR 474 (978)
Q Consensus 410 ~v~~G~~~~l~C~~~g-~p~--~~v~W~~~~~~l~~~~~~~--------~~~~~L~i~~~~~~d~G-~Y~C~a~n~~ 474 (978)
.+.+|..+++.|.+.+ .|. .+|.|++.+..+....... .....+.+... .+|.| .|+|+|.-..
T Consensus 11 ~l~~G~~vtv~C~v~~v~P~~~l~v~LlkG~~~l~~~~f~~~~~~ks~~~~~~~vtftpt-reD~g~~fsC~A~L~l 86 (99)
T cd07689 11 PLEEGKPVTVKCEVPDVYPFDRLEIELLKGETLLPSKSFLEDMDKKSLETKSLEVTFTPT-IEDIGKVLVCRAKLHI 86 (99)
T ss_pred cccCCceEEEEEEecCcccCCceEEEEecCcceecccccccccccCCCCCcceeEEEecc-hhhCCcEEEEEEEEee
Confidence 3469999999999984 555 4799999877765443221 11234555554 66766 9999997543
No 415
>cd07691 Ig_CD3_gamma_delta Immunoglobulin (Ig)-like domain of CD3 gamma and delta chains. Ig_CD3_gamma_delta; immunoglobulin (Ig)-like domain of CD3 gamma and delta chains. CD3 is a T cell surface receptor that is associated with alpha/beta T cell receptors (TCRs). The CD3 complex consists of one gamma, one delta, two epsilon, and two zeta chains. The CD3 subunits form heterodimers as gamma/epsilon, delta/epsilon, and zeta/zeta. The gamma, delta, and epsilon chains each contain an extracellular Ig domain, whereas the extracellular domains of the zeta chains are very small and have unknown structure. The CD3 domain participates in intracellular signalling once the TCR has bound an MHC/antigen complex.
Probab=96.32 E-value=0.014 Score=43.29 Aligned_cols=50 Identities=32% Similarity=0.527 Sum_probs=38.0
Q ss_pred CCCeEEEEEeeccCCCCeeEEeeCCEEecCCCcEEEeecCcEEEccccCCCCEEEEEEEEe
Q psy12060 602 EGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTATN 662 (978)
Q Consensus 602 ~g~~~~l~C~~~~~p~~~i~W~~~g~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n 662 (978)
..+.|.|.|.+. .+|.|++ |..+.... +.+|.+.....+-.|.|.|.+.+
T Consensus 5 ~~~~V~L~C~~~----tsi~W~k-G~~~~~~~------~~tlnLGs~~~DPRG~Y~C~~s~ 54 (69)
T cd07691 5 SEGKVFLKCNGA----TNITWKK-GKEILEVS------NTLLDLGSRINDPRGTYSCKESE 54 (69)
T ss_pred cCceEEEEecCC----CcEEEec-Cccccccc------ccEEeccCcccCCCcceEecCcc
Confidence 356899999752 4699999 65544321 45688999999999999999877
No 416
>PF07654 C1-set: Immunoglobulin C1-set domain; InterPro: IPR003597 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents C1-set domains, which are classical Ig-like domains resembling the antibody constant domain. C1-set domains are found almost exclusively in molecules involved in the immune system, such as in immunoglobulin light and heavy chains, in the major histocompatibility complex (MHC) class I and II complex molecules [, ], and in various T-cell receptors.; PDB: 3BVN_D 3BXN_A 3PWV_E 3L9R_F 2XFX_B 1BMG_A 1K8I_A 3M1B_G 3M17_C 1EXU_A ....
Probab=96.32 E-value=0.019 Score=46.55 Aligned_cols=63 Identities=27% Similarity=0.459 Sum_probs=43.4
Q ss_pred cCCCeEEEEEeeccC-CCC-eeEEeeCCEEecCCCcEEE---eecCc------EEEccccCCCCEEEEEEEEeCCce
Q psy12060 601 GEGGNVTIFCNPEAA-PKP-KFVWKKDGNIIGSGGRRKI---FENGN------LLISPVSRDDSGIYSCTATNVHGM 666 (978)
Q Consensus 601 ~~g~~~~l~C~~~~~-p~~-~i~W~~~g~~~~~~~~~~~---~~~~~------l~i~~~~~~d~G~Y~C~a~n~~g~ 666 (978)
..++.++|.|.+.++ |.. .|+|+++|..+........ ..+++ |.+. ..+...|+|++.+....
T Consensus 6 ~~~~~~~L~C~v~~f~P~~i~v~W~~~~~~~~~~~~~~~~~~~~dgty~~~s~l~v~---~~~~~~ysC~V~H~~l~ 79 (83)
T PF07654_consen 6 ELGGSVTLTCLVSGFYPKDITVTWLKNGKEVTEGVETTPPPPNSDGTYSVTSSLTVT---WNSGDEYSCRVTHESLP 79 (83)
T ss_dssp HSTSEEEEEEEEEEEBSSTEEEEEEETTEEETTTEEEEEEEEETTSEEEEEEEEEEE---TTTTGGEEEEEEETTSS
T ss_pred cCCCCEEEEEEEEEEECCCcEEEEEeccceeeeeeeecccccccccceeeeEEEEec---CCCCCEEEEEEEECCCC
Confidence 358999999999985 443 8999999998875532211 23443 4444 55666899999886543
No 417
>cd04985 IgC_CH1 CH1 domain (first constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH1: The first immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fab antigen-binding fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=96.31 E-value=0.032 Score=46.24 Aligned_cols=67 Identities=21% Similarity=0.380 Sum_probs=40.8
Q ss_pred CCCceeEEEEeecC-C-CCeeEEeECCEECCCCCC----CCCCCCcEEEecCEEEEEeCCCCCCCeEEEEEEEcCC
Q psy12060 502 NQADLTWTCEAFGV-P-DVTYSWFRNGELLNSETL----PLEDQDRYFIQDNVLTIRYLNPERDPAMYQCRAKNQL 571 (978)
Q Consensus 502 ~g~~~~l~C~~~~~-p-~~~i~W~~~g~~~~~~~~----~~~~~~~~~~~~~~l~i~~~~~~~d~G~Y~C~a~n~~ 571 (978)
.++.++|.|.+.|+ | ..+|+|+|||+. ..... .....+.| .....|.+....- .....|+|.+.+..
T Consensus 15 ~~~~~~L~C~a~gFyP~~i~vtW~k~g~~-~~~~~~~~~~~~~dgty-~~~s~L~v~~~~w-~~~~~ytC~V~H~~ 87 (95)
T cd04985 15 SSDSVTLGCLATGFLPEPVTFTWNSGSNS-TSGVKTYPAVLQSGGLY-TASSQLTVPASEW-KGKESFYCKVEHPS 87 (95)
T ss_pred CCCcEEEEEEEeeEECCCcEEEEeECCEE-CCCcEECCCEeCCCCCE-EEEEEEEEeHHHc-CCCCcEEEEEEeCC
Confidence 46679999999986 4 678999999997 32211 01112222 2233455553221 23567999999864
No 418
>KOG4367|consensus
Probab=96.28 E-value=0.0029 Score=63.97 Aligned_cols=82 Identities=22% Similarity=0.232 Sum_probs=65.5
Q ss_pred eeCCeeEEEeecCCCCCCCceeEEEEEeeccccCceEecccccceeeeecCCceeeEEeeccCCCceeEEEEEEecCCcc
Q psy12060 789 VHKTSATIQWTDGATNGRPITHYKIIARTNWNSTWFNVSEHVIGKEVDRYTGRKEASIENVLVPWSTYEFKVIAGNELGY 868 (978)
Q Consensus 789 ~~~~~v~l~W~~p~~~~~~i~~Y~v~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~L~p~~~Y~~~v~A~N~~G~ 868 (978)
...++++|.|..|...+.+..+|.++......+.+..+- +...+.-++.| |.-++.|.-||.|.|..|.
T Consensus 450 t~nns~t~~wkqp~~~~~~~dg~~leld~g~~g~frevy----------~g~etmctvdg-lhfns~y~arvka~n~tg~ 518 (699)
T KOG4367|consen 450 THNNSATLSWKQPPLSTVPADGYILELDDGNGGQFREVY----------VGKETMCTVDG-LHFNSTYNARVKAFNKTGV 518 (699)
T ss_pred ccCCceEEEeecCCCCCCCCcceEEEeecCCCCceeEEE----------ecCceeEEecc-eecchhHHHHHHHhhccCC
Confidence 567899999998888888999999998776555554332 23456778999 9999999999999999999
Q ss_pred CCCCCCCCCCCCCC
Q psy12060 869 GEPSSPSPQYNTPA 882 (978)
Q Consensus 869 g~~s~~~~~~~t~~ 882 (978)
+++|..+ ..+|.+
T Consensus 519 s~ys~tl-~lqts~ 531 (699)
T KOG4367|consen 519 SPYSKTL-VLQTSE 531 (699)
T ss_pred Cccccee-Eeeecc
Confidence 9999866 555543
No 419
>cd07703 Ig2_Nectin-2_like Second immunoglobulin (Ig) domain of nectin-2 (also known as poliovirus receptor related protein 2 or CD112) and similar proteins. Ig2_Nectin-2_like: domain similar to the second immunoglobulin (Ig) domain of nectin-2 (also known as poliovirus receptor related protein 2 or CD112). Nectin-2 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectin-2 and nectin-3 localize at Sertoli-spermatid junctions where they form heterophilic trans-interactions between the cells that are essential for the formation and maintenance of the junctions and for spermatid development.
Probab=96.26 E-value=0.015 Score=48.00 Aligned_cols=62 Identities=15% Similarity=0.237 Sum_probs=39.8
Q ss_pred CcEEEEEEEe-ecCCCeeEEEEcCccCCCCceeee------cccEEEeCCCCCCCCeEEEEEEEeCCCc
Q psy12060 415 DKVRLECVAF-GYPVPSYNWTRRGSPLPRNAYFEN------FNRILTIPNVKVEDQGEYICRASNDRSA 476 (978)
Q Consensus 415 ~~~~l~C~~~-g~p~~~v~W~~~~~~l~~~~~~~~------~~~~L~i~~~~~~d~G~Y~C~a~n~~g~ 476 (978)
..+.+.|.+. |.|.++|+|+++............ -.+.|.+.....+|...|+|++.+..-.
T Consensus 16 ~~~va~C~s~~gkPaa~IsW~~~~~g~~~~~~~~~~~gt~tv~S~l~~~P~~~d~Gk~ltC~v~h~al~ 84 (95)
T cd07703 16 PVPVAKCVSANGRPPARISWSSTLGGNANTTSKENGDGTVTVTSEYSLVPTPEANGKEVTCKVEHETLQ 84 (95)
T ss_pred ccEEEEEEcCCCCCCcEEEEEcCCCCCeeEEEEeCCCCCEEEEEEEEEecCHHHCCCEEEEEEeCcccC
Confidence 4578999887 799999999998322211111111 1235666655556666999999997643
No 420
>smart00406 IGv Immunoglobulin V-Type.
Probab=96.26 E-value=0.0099 Score=47.97 Aligned_cols=55 Identities=33% Similarity=0.585 Sum_probs=36.1
Q ss_pred cEEEEEEEeecCCC--eeEEEEcCc--cC------C----------CCceee------ecccEEEeCCCCCCCCeEEEEE
Q psy12060 416 KVRLECVAFGYPVP--SYNWTRRGS--PL------P----------RNAYFE------NFNRILTIPNVKVEDQGEYICR 469 (978)
Q Consensus 416 ~~~l~C~~~g~p~~--~v~W~~~~~--~l------~----------~~~~~~------~~~~~L~i~~~~~~d~G~Y~C~ 469 (978)
+++|.|.+.....+ .+.|++... .+ . ...++. ....+|.|.+++.+|+|.|.|.
T Consensus 1 ~v~l~C~~~~~~~~~~~v~W~~~~~~~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~ 80 (81)
T smart00406 1 SVTLSCKASGFTFSSYYVSWVRQPPGKGLEWLGYIGSSGSTYYQQSYKGRVTISKDTSKNDVSLTISNLRVEDTGTYYCA 80 (81)
T ss_pred CEEEEEEEeccccceeEEEEEEeCCCCCeEEEEEEcCCCcEEECcccCCcEEEEecCcCCEEEEEEcCCCHHHCEEEEEc
Confidence 47899998754443 799998542 10 0 001111 1225699999999999999996
Q ss_pred E
Q psy12060 470 A 470 (978)
Q Consensus 470 a 470 (978)
+
T Consensus 81 v 81 (81)
T smart00406 81 V 81 (81)
T ss_pred C
Confidence 3
No 421
>PHA02672 ORF110 EEV glycoprotein; Provisional
Probab=96.24 E-value=0.0042 Score=52.85 Aligned_cols=69 Identities=20% Similarity=0.311 Sum_probs=52.5
Q ss_pred ccccccccceeccCeeEEEEccCCCCHHHHHHHhhhcCCeeeeeCChhhHHHHHHHhhccCCCCceEEEEeecC
Q psy12060 25 LELRCPQHWVQYRDSCYRFVKSPLKTRNDAKLNCKSLDSDLANVNDADEHGFIMYQLFWQDPQRRKWYFGGTQQ 98 (978)
Q Consensus 25 ~~~~Cp~~w~~~~~~Cy~~~~~~~~~~~~A~~~C~~~~~~L~~i~~~~e~~~i~~~~~~~~~~~~~w~g~~~~~ 98 (978)
....|..||..+++.||+-..-. .+-..|...|+.+.|+|--+-|.. +|...+. ......+|++-++..
T Consensus 46 ~~~AC~~GWvp~dd~CyLnT~~q-~s~~~A~~iC~~~~a~lP~~pn~~---hLKgVm~-lt~~r~FW~thh~~y 114 (166)
T PHA02672 46 LKEACENGWVPIKDLCVLNTHVI-TNVTLAHDICASMDGDPPATPNTM---LLKGIMF-LTGERSFWMTHHDAY 114 (166)
T ss_pred hhhhhhcCCeeccCEEEEeccee-ecccHHHHHHHhccCCCCCCCCHh---Hhhheee-EecccEEEEEccccc
Confidence 35679999999999999999885 899999999999999999877654 3332331 123456888866543
No 422
>cd04986 IgC_CH2 CH2 domain (second constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH2: The second immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=96.20 E-value=0.012 Score=48.59 Aligned_cols=69 Identities=16% Similarity=0.314 Sum_probs=42.7
Q ss_pred EEEccccEEEEEEeeecC-CcCeEEEEeeCCEEccccccccccCCeeecCCc------eEEEeccCCCCCEEEEEEEEcC
Q psy12060 690 TIAAHRNLQLRCSAHTEE-LLDVAYIWTHNGVRIGNMDLNELETPNINIDGG------LLEITNASFADAGEYECVVKST 762 (978)
Q Consensus 690 ~~~~g~~~~l~C~~~~~p-~~~~~~~W~~~g~~~~~~~~~~~~~~~~~~~~~------~l~i~~~~~~d~g~Y~c~a~n~ 762 (978)
....+..++|.|.+.+.. +.++.+.|.++|.. .... .......++ .|++..-.......|+|+|...
T Consensus 15 ~l~~~~~atLtClV~~f~~P~~i~V~W~~~g~~-~~~~-----t~~~~~~dgTys~~S~L~v~~~~W~~g~~ytC~V~H~ 88 (99)
T cd04986 15 DLLLGSSASLTCTLSGLRDPEGAVFTWTPSGGK-EAVQ-----TSAESDQCGCYSVSSVLPGCAEEWNKGEPFACTVTHP 88 (99)
T ss_pred HhCcCCccEEEEEEeccCCCCCeEEEEEECCcc-CcEE-----cCcccCCCCCEEEEEEEEeCHHHhcCCCeEEEEEECC
Confidence 344678899999999977 77899999999876 1110 011111122 3444332234445799999776
Q ss_pred CC
Q psy12060 763 VG 764 (978)
Q Consensus 763 ~G 764 (978)
..
T Consensus 89 ~l 90 (99)
T cd04986 89 EG 90 (99)
T ss_pred Cc
Confidence 44
No 423
>PF07654 C1-set: Immunoglobulin C1-set domain; InterPro: IPR003597 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents C1-set domains, which are classical Ig-like domains resembling the antibody constant domain. C1-set domains are found almost exclusively in molecules involved in the immune system, such as in immunoglobulin light and heavy chains, in the major histocompatibility complex (MHC) class I and II complex molecules [, ], and in various T-cell receptors.; PDB: 3BVN_D 3BXN_A 3PWV_E 3L9R_F 2XFX_B 1BMG_A 1K8I_A 3M1B_G 3M17_C 1EXU_A ....
Probab=95.98 E-value=0.013 Score=47.42 Aligned_cols=65 Identities=23% Similarity=0.338 Sum_probs=43.9
Q ss_pred cccEEEEEEeeecCCcCeEEEEeeCCEEccccccccccCCeeecCCc------eEEEeccCCCCCEEEEEEEEcCCC
Q psy12060 694 HRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGG------LLEITNASFADAGEYECVVKSTVG 764 (978)
Q Consensus 694 g~~~~l~C~~~~~p~~~~~~~W~~~g~~~~~~~~~~~~~~~~~~~~~------~l~i~~~~~~d~g~Y~c~a~n~~G 764 (978)
++.++|.|.+.+..+..+.+.|+++|..+...... .......++ .|.+. ..+...|+|++.....
T Consensus 8 ~~~~~L~C~v~~f~P~~i~v~W~~~~~~~~~~~~~---~~~~~~~dgty~~~s~l~v~---~~~~~~ysC~V~H~~l 78 (83)
T PF07654_consen 8 GGSVTLTCLVSGFYPKDITVTWLKNGKEVTEGVET---TPPPPNSDGTYSVTSSLTVT---WNSGDEYSCRVTHESL 78 (83)
T ss_dssp TSEEEEEEEEEEEBSSTEEEEEEETTEEETTTEEE---EEEEEETTSEEEEEEEEEEE---TTTTGGEEEEEEETTS
T ss_pred CCCEEEEEEEEEEECCCcEEEEEeccceeeeeeee---cccccccccceeeeEEEEec---CCCCCEEEEEEEECCC
Confidence 78899999999988899999999999987643210 011111222 34444 4566689999976543
No 424
>PF09294 Interfer-bind: Interferon-alpha/beta receptor, fibronectin type III; InterPro: IPR015373 Members of this family adopt a secondary structure consisting of seven beta-strands arranged in an immunoglobulin-like beta-sandwich, in a Greek-key topology. They are required for binding to interferon-alpha []. ; PDB: 1A21_A 3LQM_B 3ELA_T 1AHW_C 2A2Q_T 1TFH_B 1FAK_T 1WSS_T 1W2K_T 2FIR_T ....
Probab=95.91 E-value=0.0073 Score=51.83 Aligned_cols=84 Identities=21% Similarity=0.254 Sum_probs=48.7
Q ss_pred CCCCceeecccccCcEEEEEEeCCC----CCCCCC------cceEEEEEEecCCccceeeeeeeccceeEEEEEcCCCCc
Q psy12060 887 QAPSRIGGGGGKIGDLSISWEPLPR----EKQNAP------NIYYKIFWRKKNDTEFQSETLKEYGNVGIAVVRIPSEFY 956 (978)
Q Consensus 887 ~~P~~~~~~~~~~~si~v~W~~p~~----~~~~g~------i~~Y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~p 956 (978)
+||. +.+ ....++|.|.+.+|.. ...+.. -..|.|.|++.++..... .. ......+.|.+|.|
T Consensus 4 gPP~-v~v-~~~~~~l~V~i~~P~~~~~~~~~~~~l~~~~~~~~Y~v~~~~~~~~~~~~-~~----~~~~~~~~l~~L~p 76 (106)
T PF09294_consen 4 GPPS-VNV-SSCGGSLHVTIKPPMTPLRAGGKNSSLRDIYPSLSYNVSYWKNGSNEKKK-EI----ETKNSSVTLSDLKP 76 (106)
T ss_dssp -SSE-EEE-EEETTEEEEEEEESEEEEECSSSEEEHHHHHGG-EEEEEEEETTTSCEEE-EE----ESSSEEEEEES--T
T ss_pred cCCE-EEE-EECCCEEEEEEECCCcccccCCCCCcHHHhCCCeEEEEEEEeCCCccceE-EE----eecCCEEEEeCCCC
Confidence 5665 777 5667789999999541 111111 245999998887651111 11 11123467999999
Q ss_pred eeeEEEEEEEec--CCCCCCCCC
Q psy12060 957 YTEYEVKVQAIN--DVGPGPESE 977 (978)
Q Consensus 957 ~t~Y~~~V~A~n--~~G~gp~S~ 977 (978)
++.|-|+|+|.. ....|.+|+
T Consensus 77 ~t~YCv~V~~~~~~~~~~s~~S~ 99 (106)
T PF09294_consen 77 GTNYCVSVQAFSPSQNKNSQPSE 99 (106)
T ss_dssp TSEEEEEEEEEECSSTEEEEEBS
T ss_pred CCCEEEEEEEEeccCCCcCCCCC
Confidence 999999999932 223355543
No 425
>KOG3632|consensus
Probab=95.68 E-value=0.056 Score=61.34 Aligned_cols=192 Identities=18% Similarity=0.187 Sum_probs=112.6
Q ss_pred EEcCCCce-eeeEEEEE-cCCCCCCCceEEEEeeCCeeEEEeecCCCCCCCceeEEEEEeeccccCceEecccccceeee
Q psy12060 759 VKSTVGKI-STKTTVIV-EGPPGLPGGVQVVEVHKTSATIQWTDGATNGRPITHYKIIARTNWNSTWFNVSEHVIGKEVD 836 (978)
Q Consensus 759 a~n~~G~~-s~~~~l~v-~~~P~~P~~~~~~~~~~~~v~l~W~~p~~~~~~i~~Y~v~~~~~~~~~w~~~~~~~~~~~~~ 836 (978)
+..+.|.. .....|.+ ...|..|.++++.+++.++..|+|-+...+.. -.| |-...+-. .
T Consensus 651 ~ltSrGsqd~lrc~Llvgg~a~vvpsqlrv~n~tqtSa~itwvp~nsn~~----Hvi-yln~eE~~-------p------ 712 (1335)
T KOG3632|consen 651 RLTSRGSQDQLRCILLVGGAAPVVPSQLRVWNATQTSAMITWVPFNSNFL----HVI-YLNAEEPR-------P------ 712 (1335)
T ss_pred hhhccCCCCcceeeEeccccccccchhhhhhhhhchhhheeeeecCCCcc----eee-ecCCccCC-------C------
Confidence 33445532 23333333 45688999999999999999999997543221 122 21111100 0
Q ss_pred ecCCceeeEEeeccCCCceeEEEEEEecC-CccCC--------CCCCCCCCCCCCCCCCCCCCceeec-ccccCcEEEEE
Q psy12060 837 RYTGRKEASIENVLVPWSTYEFKVIAGNE-LGYGE--------PSSPSPQYNTPADKPYQAPSRIGGG-GGKIGDLSISW 906 (978)
Q Consensus 837 ~~~~~~~~~~~~~L~p~~~Y~~~v~A~N~-~G~g~--------~s~~~~~~~t~~~~P~~~P~~~~~~-~~~~~si~v~W 906 (978)
.......+++.+ |.|++.|..+|-|.-. .+... -+.+. .|+|.++.|+.+|..|++. ..+...+.++|
T Consensus 713 s~a~~y~ytf~~-lrpgt~y~a~vea~~p~q~pwdl~~v~~etr~atv-~f~tLpAGppappldV~vE~g~spg~l~vsw 790 (1335)
T KOG3632|consen 713 SVAEMYNYTFMR-LRPGTDYWASVEAALPRQEPWDLRMVPMETRQATV-LFRTLPAGPPAPPLDVKVETGGSPGRLEVSW 790 (1335)
T ss_pred chhhhhHHHHhc-cCCCCccceecccccCcCCCcccccchhhhhccce-eeecccCCCCCCchheeeecCCCCceeeeec
Confidence 012334567788 9999999999998755 22111 12223 6889999999999999996 45668899999
Q ss_pred EeCCCCCC----CCCcceEEEEEEecCCccceeeeeeeccceeEEEEEcCCCCc-eeeEEEEEEEecCCCCCCCC
Q psy12060 907 EPLPREKQ----NAPNIYYKIFWRKKNDTEFQSETLKEYGNVGIAVVRIPSEFY-YTEYEVKVQAINDVGPGPES 976 (978)
Q Consensus 907 ~~p~~~~~----~g~i~~Y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~p-~t~Y~~~V~A~n~~G~gp~S 976 (978)
.||-.+.. +-.++||-||-... +...+.... ...+.+.+.-|.- ..-=.|.|+-...-|++--|
T Consensus 791 rPptldsag~sngv~vtgYavyadgq-----kv~Evafpt-agst~VelsQlq~~l~~~~V~vRtms~~gesvds 859 (1335)
T KOG3632|consen 791 RPPTLDSAGCSNGVAVTGYAVYADGQ-----KVEEVAFPT-AGSTKVELSQLQDGLYHGAVGVRTMSVPGESVDS 859 (1335)
T ss_pred cCceeccccccCceeeeeeeeeeCCc-----eeeeeeccc-CCceEEEeeeehhhheecceeEEecccCcccccc
Confidence 99654332 33678999976521 111222111 1112233333322 34445677777766766444
No 426
>COG4733 Phage-related protein, tail component [Function unknown]
Probab=95.66 E-value=0.092 Score=59.03 Aligned_cols=143 Identities=13% Similarity=0.141 Sum_probs=79.0
Q ss_pred eeEEEEEeeccccCceEecccccceeeeecCCceeeEEeeccCCCceeEEEEEEecCCccCCCCCCCCCCCC-CCCCCCC
Q psy12060 809 THYKIIARTNWNSTWFNVSEHVIGKEVDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPSPQYNT-PADKPYQ 887 (978)
Q Consensus 809 ~~Y~v~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~L~p~~~Y~~~v~A~N~~G~g~~s~~~~~~~t-~~~~P~~ 887 (978)
..+.|.|...+...|..... .....+.+.+ |.+ ..|.++|+|.|..|....-..+..|+. .+..|+.
T Consensus 637 f~~~~a~~a~~~~~~vta~r----------t~~~~~~~~g-i~~-GqY~i~VrAiN~~g~~~~~a~s~~f~i~g~~~Ppp 704 (952)
T COG4733 637 FLAAWAYEAGWDGNWITAPR----------TSAAGFDVEG-IPA-GQYAIRVRAINVFEPNSPDATAYEFALNGKKVPPP 704 (952)
T ss_pred HHHHHHhhcccCCceEeccc----------ccccceeecC-cCc-cceEEEEEEeeccCCCCCCcceeEEEecCCCCCCC
Confidence 34555555555556665433 2356678888 877 789999999999997765442223332 2334444
Q ss_pred CCCceeecccccCcEEEEEEeCCCCCCCCCcceEEEEEEec-----CCccceeeeeeeccceeEEEEEcCCCCceeeEEE
Q psy12060 888 APSRIGGGGGKIGDLSISWEPLPREKQNAPNIYYKIFWRKK-----NDTEFQSETLKEYGNVGIAVVRIPSEFYYTEYEV 962 (978)
Q Consensus 888 ~P~~~~~~~~~~~si~v~W~~p~~~~~~g~i~~Y~i~~~~~-----~~~~~~~~~~~~~~~~~~~~~~l~~L~p~t~Y~~ 962 (978)
.|..+....+.- .+.+.|-- +.-.|.+.+.+. ...+.+ ....++...-...-.+|+|+..|.|
T Consensus 705 ~~~t~~a~~it~-~~~l~v~d--------Pt~~~d~~~sei~~s~~~d~~~~---Ar~LG~~~~~~~~~~~i~~g~~~~F 772 (952)
T COG4733 705 KAMIYDAVIITL-VIRLVVGD--------PTGAVDITSTEIRSAVIADGNFQ---ARSLGNLNYPGLFSVGIQAGLTFWF 772 (952)
T ss_pred cccccceEEEEe-eeeEEEec--------CCcceEEeeeeeeeeccccchhH---HhhhhccccccccccCcCCCceEEE
Confidence 444444333332 25556654 223444443332 211111 0111111111122258999999999
Q ss_pred EEEEecCCCCCCC
Q psy12060 963 KVQAINDVGPGPE 975 (978)
Q Consensus 963 ~V~A~n~~G~gp~ 975 (978)
+++++|..|...+
T Consensus 773 ~~R~Vn~vG~~~~ 785 (952)
T COG4733 773 RNRNVDLVGNNDK 785 (952)
T ss_pred Eeeeccccccccc
Confidence 9999999998654
No 427
>cd04985 IgC_CH1 CH1 domain (first constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH1: The first immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fab antigen-binding fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=95.21 E-value=0.12 Score=42.76 Aligned_cols=67 Identities=16% Similarity=0.307 Sum_probs=41.1
Q ss_pred ccccEEEEEEeeecCCcCeEEEEeeCCEEccccccccccCCeeecCCc------eEEEeccCCCCCEEEEEEEEcCC
Q psy12060 693 AHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGG------LLEITNASFADAGEYECVVKSTV 763 (978)
Q Consensus 693 ~g~~~~l~C~~~~~p~~~~~~~W~~~g~~~~~~~~~~~~~~~~~~~~~------~l~i~~~~~~d~g~Y~c~a~n~~ 763 (978)
.++.++|.|.+.+.-+..+++.|.++|.. .... .. ......+++ .|++........-.|+|++....
T Consensus 15 ~~~~~~L~C~a~gFyP~~i~vtW~k~g~~-~~~~-~~--~~~~~~~dgty~~~s~L~v~~~~w~~~~~ytC~V~H~~ 87 (95)
T cd04985 15 SSDSVTLGCLATGFLPEPVTFTWNSGSNS-TSGV-KT--YPAVLQSGGLYTASSQLTVPASEWKGKESFYCKVEHPS 87 (95)
T ss_pred CCCcEEEEEEEeeEECCCcEEEEeECCEE-CCCc-EE--CCCEeCCCCCEEEEEEEEEeHHHcCCCCcEEEEEEeCC
Confidence 45678999999998888999999999997 3211 00 011111122 34443332223557999997643
No 428
>PF08204 V-set_CD47: CD47 immunoglobulin-like domain; InterPro: IPR013270 This family represents the CD47 leukocyte antigen V-set like Ig domain [, ].; PDB: 2VSC_B 2JJS_D 2JJT_C.
Probab=95.14 E-value=0.051 Score=47.00 Aligned_cols=83 Identities=12% Similarity=0.221 Sum_probs=49.7
Q ss_pred EEccccEEEEEEeee---cCCcCeEEEEeeCCEEccccccccc-------cC---CeeecCCceEEEeccCCCCCEEEEE
Q psy12060 691 IAAHRNLQLRCSAHT---EELLDVAYIWTHNGVRIGNMDLNEL-------ET---PNINIDGGLLEITNASFADAGEYEC 757 (978)
Q Consensus 691 ~~~g~~~~l~C~~~~---~p~~~~~~~W~~~g~~~~~~~~~~~-------~~---~~~~~~~~~l~i~~~~~~d~g~Y~c 757 (978)
..-++.|.|.|.+.. .....+.+.|..+|..+-..+-... .. ..+.....+|.+...+.- .|.|+|
T Consensus 24 t~CN~tV~IPC~v~n~~~~ni~~m~VkWk~~~~~If~~dg~~~~~~~~~f~sa~i~~l~kG~aSL~~~~~~a~-~GnYTC 102 (130)
T PF08204_consen 24 TVCNDTVVIPCFVNNLEANNISEMYVKWKFKNKDIFIFDGTNNKSTSDNFPSAKISELLKGNASLKMDKSDAV-EGNYTC 102 (130)
T ss_dssp -TT-SEEEE--BBSS---SSGGGEEEEEEETTEEEEEEETTTTEEEEGGGTT-BEGGGGGTB--EEEEHHHHH--EEEEE
T ss_pred EecCCCEEEEeEeccccccccceEEEEEEECCeEEEEEcCccceecccCccccchhHhhCCCEEEEEcchhcc-ccceEE
Confidence 345788999999965 3345678899998887643221100 00 111223346888775544 899999
Q ss_pred EEEcCCCceeeeEEEEE
Q psy12060 758 VVKSTVGKISTKTTVIV 774 (978)
Q Consensus 758 ~a~n~~G~~s~~~~l~v 774 (978)
.|.....+.+..+.|..
T Consensus 103 eVt~~~~ege~~i~Lk~ 119 (130)
T PF08204_consen 103 EVTELSREGETTIELKY 119 (130)
T ss_dssp EEEETTEEEEEEEEEEE
T ss_pred EEEecCCCceEEEEEEE
Confidence 99988888888877776
No 429
>cd05721 IgV_CTLA-4 Immunoglobulin (Ig) domain of cytotoxic T lymphocyte-associated antigen 4 (CTLA-4). IgV_CTLA-4: domain similar to the variable(v)-type immunoglobulin (Ig) domain found in cytotoxic T lymphocyte-associated antigen 4 (CTLA-4). CTLA-4 is involved in the regulation of T cell response, acting as an inhibitor of intracellular signalling. CTLA-4 is similar to CD28, a T cell co-receptor protein that recognizes the B7 proteins (CD80 and CD86). CD28 binding of the B7 proteins occurs after the presentation of antigen to the T cell receptor (TCR) via the peptide-MHC complex on the surface of an antigen presenting cell (APC). CTLA-4 also binds the B7 molecules with a higher affinity than does CD28. The B7/CTLA-4 interaction generates inhibitory signals down-regulating the response, and may prevent T cell activation by weak TCR signals. CD28 and CTLA-4 then elicit opposing signals in the regulation of T cell responsiveness and homeostasis. T cell activation leads to increased
Probab=95.11 E-value=0.15 Score=43.11 Aligned_cols=67 Identities=13% Similarity=0.077 Sum_probs=39.2
Q ss_pred cCcEEEEEEeecCCCC---eEEEEEcccc-ccccccc----ccCCCCCCceEee----c--ceEEEeCCCCCCCCeEEEE
Q psy12060 209 LNDITLSCYAGGYPNP---SYEWFKEDYV-QDRLVAN----LIDPLSDKRFTLS----G--GNLIINDPRQVEDRGSYHC 274 (978)
Q Consensus 209 g~~~~l~C~~~g~p~~---~v~W~~~~~~-~~~~~~~----~~~~~~~~~~~~~----~--~~l~i~~~~~~~d~G~Y~C 274 (978)
|+.++|.|.++|.-.. .++|+|.... ++..... ......+.++..+ + -+|.|.+. +.+|++.|.|
T Consensus 13 ~~sv~LsC~~sg~~~s~e~~~~wvRq~pg~lE~c~~~~~~g~~~~~~~~r~tcs~~~s~ntv~L~l~~L-~a~DTa~Y~C 91 (115)
T cd05721 13 NGAASLVCEYTYNGFSKEFRASLLKGADSAVEVCAVTGNMSNQLQTSLDGFNCDGTLGNEQVNFTLQNL-RANQTDIYFC 91 (115)
T ss_pred CCCEEEEEEecCCccccEEEEEEEEeCCCCcEEEEEEeCCCccccccCCCeEEeEeCCCCEEEEEEcCC-CHHHCeEEEE
Confidence 4459999999775443 6899996322 1111111 0111123333321 1 26888887 9999999999
Q ss_pred EE
Q psy12060 275 KA 276 (978)
Q Consensus 275 ~a 276 (978)
..
T Consensus 92 a~ 93 (115)
T cd05721 92 KI 93 (115)
T ss_pred Ee
Confidence 54
No 430
>PF01108 Tissue_fac: Tissue factor; PDB: 3OG4_B 3OG6_B 1FYH_E 1FG9_D 1JRH_I 3DGC_R 3DLQ_R 1LQS_R 1Y6M_R 1J7V_R ....
Probab=95.08 E-value=0.13 Score=44.03 Aligned_cols=84 Identities=18% Similarity=0.242 Sum_probs=54.5
Q ss_pred cCCCCCCCceEEEEeeCCeeEEEeecCCCCCCCceeEEEEEeeccccCceEecccccceeeeecCCceeeEEeecc-CCC
Q psy12060 775 EGPPGLPGGVQVVEVHKTSATIQWTDGATNGRPITHYKIIARTNWNSTWFNVSEHVIGKEVDRYTGRKEASIENVL-VPW 853 (978)
Q Consensus 775 ~~~P~~P~~~~~~~~~~~~v~l~W~~p~~~~~~i~~Y~v~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~L-~p~ 853 (978)
.+...+|.|+++... .-...|+|+++.... +-..|.|+|+..+...|..+..-.. .....--++..+ .+.
T Consensus 19 ~~~lp~P~nv~~~s~-nf~~iL~W~~~~~~~-~~~~ytVq~~~~~~~~W~~v~~C~~-------i~~~~Cdlt~~~~~~~ 89 (107)
T PF01108_consen 19 SASLPAPQNVTVDSV-NFKHILRWDPGPGSP-PNVTYTVQYKKYGSSSWKDVPGCQN-------ITETSCDLTDETSDPS 89 (107)
T ss_dssp -SSGSSCEEEEEEEE-TTEEEEEEEESTTSS-STEEEEEEEEESSTSCEEEECCEEE-------ESSSEEECTTCCTTTT
T ss_pred cccCCCCCeeEEEEE-CCceEEEeCCCCCCC-CCeEEEEEEEecCCcceeeccceec-------ccccceeCcchhhcCc
Confidence 345567889988544 567999999965444 4578999999777889987622110 012233333312 367
Q ss_pred ceeEEEEEEecCCc
Q psy12060 854 STYEFKVIAGNELG 867 (978)
Q Consensus 854 ~~Y~~~v~A~N~~G 867 (978)
..|.+||+|.-...
T Consensus 90 ~~Y~~rV~A~~~~~ 103 (107)
T PF01108_consen 90 ESYYARVRAEVGNQ 103 (107)
T ss_dssp SEEEEEEEEEETTE
T ss_pred CCEEEEEEEEeCCc
Confidence 88999999985543
No 431
>PF08204 V-set_CD47: CD47 immunoglobulin-like domain; InterPro: IPR013270 This family represents the CD47 leukocyte antigen V-set like Ig domain [, ].; PDB: 2VSC_B 2JJS_D 2JJT_C.
Probab=95.08 E-value=0.028 Score=48.60 Aligned_cols=73 Identities=15% Similarity=0.271 Sum_probs=44.5
Q ss_pred CCCcEEEEEEEee-----cCCCeeEEEEcCccCCC----Cce-------------eeecccEEEeCCCCCCCCeEEEEEE
Q psy12060 413 AGDKVRLECVAFG-----YPVPSYNWTRRGSPLPR----NAY-------------FENFNRILTIPNVKVEDQGEYICRA 470 (978)
Q Consensus 413 ~G~~~~l~C~~~g-----~p~~~v~W~~~~~~l~~----~~~-------------~~~~~~~L~i~~~~~~d~G~Y~C~a 470 (978)
=.++|.|.|.+.. .+...|+|.+++..+-. ... ...++.+|.+.....- .|.|+|.+
T Consensus 26 CN~tV~IPC~v~n~~~~ni~~m~VkWk~~~~~If~~dg~~~~~~~~~f~sa~i~~l~kG~aSL~~~~~~a~-~GnYTCeV 104 (130)
T PF08204_consen 26 CNDTVVIPCFVNNLEANNISEMYVKWKFKNKDIFIFDGTNNKSTSDNFPSAKISELLKGNASLKMDKSDAV-EGNYTCEV 104 (130)
T ss_dssp T-SEEEE--BBSS---SSGGGEEEEEEETTEEEEEEETTTTEEEEGGGTT-BEGGGGGTB--EEEEHHHHH--EEEEEEE
T ss_pred cCCCEEEEeEeccccccccceEEEEEEECCeEEEEEcCccceecccCccccchhHhhCCCEEEEEcchhcc-ccceEEEE
Confidence 5889999999864 12336999998877521 111 1123345777764443 89999999
Q ss_pred EeCCCceEEEEEEEEE
Q psy12060 471 SNDRSALESSVTISIQ 486 (978)
Q Consensus 471 ~n~~g~~~~~~~l~V~ 486 (978)
.......+..+.|...
T Consensus 105 t~~~~ege~~i~Lk~~ 120 (130)
T PF08204_consen 105 TELSREGETTIELKYR 120 (130)
T ss_dssp EETTEEEEEEEEEEE-
T ss_pred EecCCCceEEEEEEEE
Confidence 9887777777777664
No 432
>PHA02914 Immunoglobulin-like domain protein; Provisional
Probab=94.75 E-value=6 Score=40.93 Aligned_cols=121 Identities=21% Similarity=0.298 Sum_probs=72.2
Q ss_pred ceeecCCCeEEEEEeecc--CC-CCeeEEeeCCEEecC-----------------CCcEEEe---------ecCcEEEcc
Q psy12060 597 ETYAGEGGNVTIFCNPEA--AP-KPKFVWKKDGNIIGS-----------------GGRRKIF---------ENGNLLISP 647 (978)
Q Consensus 597 ~~~~~~g~~~~l~C~~~~--~p-~~~i~W~~~g~~~~~-----------------~~~~~~~---------~~~~l~i~~ 647 (978)
+..+..|..+.|.|...- +. -..++|...|-++.+ +..+.+. ..++|+|..
T Consensus 273 ~~~~~~g~~v~~~c~~s~~~~e~i~~~~w~~t~~~~~~~~g~~~~~~~v~~~~~~~~~~~i~~~~~~s~dlk~STLTIkk 352 (500)
T PHA02914 273 EVMLEVGKRVDIECFFSMCGNENISNAKWIDTGFEIGPLIGTVKSKDIVEGDFAEDDDFMISAHANYSDDLKNSTLTIKK 352 (500)
T ss_pred eeEeccCcEEEEEEEEeecCCcccccceEEecCCcccceeEEEEecceeecccccCCceEEEEecccccchhhceEEeee
Confidence 445677999999998753 33 337889865533321 1122222 124699999
Q ss_pred ccCCCCEEEEEEEEeCCceeeeeEEEEEEeCCceeeeCCCceEEEc-cccEEEEEEeeecCCcCeEEEEeeCCEEccc
Q psy12060 648 VSRDDSGIYSCTATNVHGMDESKGRLIVLHGPSYYEQLPPKITIAA-HRNLQLRCSAHTEELLDVAYIWTHNGVRIGN 724 (978)
Q Consensus 648 ~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~p~~~~~~~~~~~~~~-g~~~~l~C~~~~~p~~~~~~~W~~~g~~~~~ 724 (978)
++-+.+|-|+|+|....-......-|.|... .+. .-... ...-.+.|-+.......+.+.|.-+|.....
T Consensus 353 a~I~N~GCY~~~a~~g~~~~ec~~Cl~V~d~-V~f------~W~~e~~n~T~V~Cyv~sy~~kp~si~wkvnGV~~~G 423 (500)
T PHA02914 353 AHINNAGCYEAQAFMGKFKEECRHCFKVADH-VFF------KWNTEGDNETKVACYAAQYDMQPFSILWKSNGVSFGG 423 (500)
T ss_pred EEEEcCCceEEEEecCcchhhhhhheEeccE-EEE------EEEeccCceEEEEEEEEecccCCceeEEEEccEEecC
Confidence 9999999999999875444333333333210 000 01112 2344567888776444567799998876543
No 433
>cd07689 Ig2_VCAM-1 Second immunoglobulin (Ig)-like domain of vascular endothelial cell adhesion molecule-1 (VCAM-1, CD106) and intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins. Ig2_ VCAM-1_like: domain similar to the second immunoglobulin (Ig)-like domain of vascular endothelial cell adhesion molecule-1 (VCAM-1, CD106). During the inflammation process, these molecules recruit leukocytes onto the vascular endothelium before extravasation to the injured tissues. The interaction of VCAM-1 binding to the beta1 integrin very late antigen (VLA-4) expressed by lymphocytes and monocytes mediates the adhesion of leucocytes to blood vessel walls, and regulates migration across the endothelium. During metastasis, some circulating cancer cells extravasate to a secondary site by a similar process. VCAM-1 may be involved in organ targeted tumor metastasis and may also act as host receptors for viruses and parasites. VCAM-1 contains seven Ig domains.
Probab=94.73 E-value=0.094 Score=42.79 Aligned_cols=67 Identities=12% Similarity=0.072 Sum_probs=42.6
Q ss_pred eecccCeEEEeCCCCCCCC--ceEEEecccccccccccceEE------EeeCCcEEEeeeeeecce-eeEEEEEeecc
Q psy12060 307 GNQNWGKAMFCDPPTNYPG--VNYYWARDYFPNFVEEDKRVF------VSYDGALYFSALEQIDAG-NYSCNVQSKVS 375 (978)
Q Consensus 307 ~~~~~~~~l~C~~~~~~p~--~~i~W~~~~~~~~~~~~~~~~------~~~~~~L~i~~~~~~d~G-~Y~C~~~n~~~ 375 (978)
..+|..+++.|.++++.|. ..+.|+|....+.. ...... ......+.|.. +.+|.| .|+|+|.-...
T Consensus 12 l~~G~~vtv~C~v~~v~P~~~l~v~LlkG~~~l~~-~~f~~~~~~ks~~~~~~~vtftp-treD~g~~fsC~A~L~l~ 87 (99)
T cd07689 12 LEEGKPVTVKCEVPDVYPFDRLEIELLKGETLLPS-KSFLEDMDKKSLETKSLEVTFTP-TIEDIGKVLVCRAKLHID 87 (99)
T ss_pred ccCCceEEEEEEecCcccCCceEEEEecCcceecc-cccccccccCCCCCcceeEEEec-chhhCCcEEEEEEEEeec
Confidence 3678899999999888887 78999986543211 110000 00112466655 477776 99999976543
No 434
>PHA02633 hypothetical protein; Provisional
Probab=94.72 E-value=0.1 Score=37.83 Aligned_cols=40 Identities=33% Similarity=0.348 Sum_probs=33.3
Q ss_pred cCcEEEccccCCCCEEEEEEEEeCCceeeeeEEEEEEeCC
Q psy12060 640 NGNLLISPVSRDDSGIYSCTATNVHGMDESKGRLIVLHGP 679 (978)
Q Consensus 640 ~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~p 679 (978)
...|.|-++..+|+|.|.|...|..-....+..|.|....
T Consensus 17 ~~nLwilpa~~sDSGiYiC~~rn~t~c~~~si~l~V~~~~ 56 (63)
T PHA02633 17 CNNMLILNPTQSDSGIYMCITKNETYSDMMKFDLCICLRI 56 (63)
T ss_pred cccEEEeccccccCcEEEEEEcCCCeeEEEEEEEEEeecc
Confidence 4459999999999999999999988777778888876543
No 435
>PF05966 Chordopox_A33R: Chordopoxvirus A33R protein; InterPro: IPR009238 This family consists of several Chordopoxvirus A33R proteins. A33R plays a role in promoting Ab-resistant cell-to-cell spread of virus [] and interacts with A36R to incorporate the protein into the outer membrane of intracellular enveloped virions (IEV) [].; PDB: 3K7B_A.
Probab=94.42 E-value=0.018 Score=52.37 Aligned_cols=45 Identities=20% Similarity=0.399 Sum_probs=31.3
Q ss_pred eeccCeeEEEEccCCCCHHHHHHHhhhcCCeeeeeCChhhHHHHHHHh
Q psy12060 34 VQYRDSCYRFVKSPLKTRNDAKLNCKSLDSDLANVNDADEHGFIMYQL 81 (978)
Q Consensus 34 ~~~~~~Cy~~~~~~~~~~~~A~~~C~~~~~~L~~i~~~~e~~~i~~~~ 81 (978)
..++++||.+...+ .+|+||...|...|+.|.+ ......+|.+++
T Consensus 108 I~~~n~Cl~~~~~p-~T~~~A~~~C~~~g~~LPs--~~l~~~WL~dYL 152 (190)
T PF05966_consen 108 IVYDNKCLTLNYEP-KTFDEANSDCNNKGQTLPS--KDLMKTWLSDYL 152 (190)
T ss_dssp EEETTEEEEEEEEE-EEHHHHHHHHHHTT-B-----HHHTTSTTHHHH
T ss_pred cccCCEEEEecCCC-CCHHHHHHHHHhcCCcCCC--cchHHHHHHHHh
Confidence 45689999999987 8999999999999999998 111123555555
No 436
>PF09067 EpoR_lig-bind: Erythropoietin receptor, ligand binding; InterPro: IPR015152 Members of this entry include the growth hormone and erythropoietin receptors. The latter interacts with erythropoietin (EPO), with subsequent initiation of the downstream chain of events associated with binding of EPO to the receptor, including EPO-induced erythroblast proliferation and differentiation through induction of the JAK2/STAT5 signalling cascade. The domain adopts a secondary structure composed of a short amino-terminal helix, followed by two beta-sandwich regions []. ; PDB: 3NCB_B 3NCF_B 3NCE_B 3N0P_B 3NCC_B 1BP3_B 3N06_B 3MZG_B 3D48_R 1F6F_C ....
Probab=94.37 E-value=0.15 Score=42.66 Aligned_cols=87 Identities=20% Similarity=0.336 Sum_probs=58.8
Q ss_pred CCCCCCceEEEEeeCCeeEEEeecCCCCCCCceeEEEEEeeccccCceEecccccceeeeecCCceeeEE--eeccCCCc
Q psy12060 777 PPGLPGGVQVVEVHKTSATIQWTDGATNGRPITHYKIIARTNWNSTWFNVSEHVIGKEVDRYTGRKEASI--ENVLVPWS 854 (978)
Q Consensus 777 ~P~~P~~~~~~~~~~~~v~l~W~~p~~~~~~i~~Y~v~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~--~~~L~p~~ 854 (978)
||+.|.++.........++--|+++..++.+ ..|.+.|...+ ..|..+........-.. -+..-.+ .+ ..-++
T Consensus 7 ~p~~P~~~~C~S~~~etftC~W~~g~~~~l~-~~y~L~Y~~~~-~~~~eCp~~~~~~~ns~--~~~~C~F~~~~-t~lf~ 81 (104)
T PF09067_consen 7 PPEKPENLKCFSREMETFTCFWEPGSEGNLP-TNYTLFYKKEG-EEWKECPDYSTSGPNST--VRHICYFPKSD-TSLFV 81 (104)
T ss_dssp HCCCCEEEEEEBSSSS-EEEEEEEESSSTST-CEEEEEEEETT-SEEEEESESSTTETTEE--EEEEEEE-CCG-CSSSS
T ss_pred CCCCCccCccCCCCCCcEEEEeeCCCCCCCC-CcEEEEEEeCC-CCCccCCCeEecCCCCc--eeEEEEcCCCC-eEEEE
Confidence 6788888888777888999999998877754 34999999876 67777654332110000 0000112 24 77789
Q ss_pred eeEEEEEEecCCcc
Q psy12060 855 TYEFKVIAGNELGY 868 (978)
Q Consensus 855 ~Y~~~v~A~N~~G~ 868 (978)
.|.++|.|.|..|.
T Consensus 82 ~y~i~V~a~~~~~~ 95 (104)
T PF09067_consen 82 PYCIQVEATNALGS 95 (104)
T ss_dssp EEEEEEEEEETTEE
T ss_pred EEEEEEEeccCCCc
Confidence 99999999999884
No 437
>PF07354 Sp38: Zona-pellucida-binding protein (Sp38); InterPro: IPR010857 This family contains a number of zona-pellucida-binding proteins that seem to be restricted to mammals. These are sperm proteins that bind to the 90 kDa family of zona pellucida glycoproteins in a calcium-dependent manner []. These represent some of the specific molecules that mediate the first steps of gamete interaction, allowing fertilisation to occur [].; GO: 0007339 binding of sperm to zona pellucida, 0005576 extracellular region
Probab=94.24 E-value=0.084 Score=51.05 Aligned_cols=50 Identities=20% Similarity=0.412 Sum_probs=42.0
Q ss_pred CCceEEEecccccccccccceEEEeeCCcEEEeeeeeecceeeEEEEEeec
Q psy12060 324 PGVNYYWARDYFPNFVEEDKRVFVSYDGALYFSALEQIDAGNYSCNVQSKV 374 (978)
Q Consensus 324 p~~~i~W~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~n~~ 374 (978)
..|.+.|..++... +....++.++..|.|.+.+...+++|.|+|..+...
T Consensus 11 iDP~y~W~GP~g~~-l~gn~~~nIT~TG~L~~~~F~esmSG~YTCtLsYk~ 60 (271)
T PF07354_consen 11 IDPTYLWTGPNGKP-LSGNSYVNITETGKLMFKNFQESMSGSYTCTLSYKP 60 (271)
T ss_pred CCCceEEECCCCcc-cCCCCeEEEccCceEEeeccccccCCceEEEEEEEe
Confidence 56789999876553 456678889999999999999999999999997654
No 438
>PF07354 Sp38: Zona-pellucida-binding protein (Sp38); InterPro: IPR010857 This family contains a number of zona-pellucida-binding proteins that seem to be restricted to mammals. These are sperm proteins that bind to the 90 kDa family of zona pellucida glycoproteins in a calcium-dependent manner []. These represent some of the specific molecules that mediate the first steps of gamete interaction, allowing fertilisation to occur [].; GO: 0007339 binding of sperm to zona pellucida, 0005576 extracellular region
Probab=93.88 E-value=0.078 Score=51.25 Aligned_cols=49 Identities=24% Similarity=0.538 Sum_probs=41.4
Q ss_pred CCCeeEEee-CCEEecCCCcEEEeecCcEEEccccCCCCEEEEEEEEeCC
Q psy12060 616 PKPKFVWKK-DGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTATNVH 664 (978)
Q Consensus 616 p~~~i~W~~-~g~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~ 664 (978)
..|.+.|.. +|..+.......+...|.|.+.+....++|.|+|..+-..
T Consensus 11 iDP~y~W~GP~g~~l~gn~~~nIT~TG~L~~~~F~esmSG~YTCtLsYk~ 60 (271)
T PF07354_consen 11 IDPTYLWTGPNGKPLSGNSYVNITETGKLMFKNFQESMSGSYTCTLSYKP 60 (271)
T ss_pred CCCceEEECCCCcccCCCCeEEEccCceEEeeccccccCCceEEEEEEEe
Confidence 367899996 4666777778899999999999999999999999987543
No 439
>cd05721 IgV_CTLA-4 Immunoglobulin (Ig) domain of cytotoxic T lymphocyte-associated antigen 4 (CTLA-4). IgV_CTLA-4: domain similar to the variable(v)-type immunoglobulin (Ig) domain found in cytotoxic T lymphocyte-associated antigen 4 (CTLA-4). CTLA-4 is involved in the regulation of T cell response, acting as an inhibitor of intracellular signalling. CTLA-4 is similar to CD28, a T cell co-receptor protein that recognizes the B7 proteins (CD80 and CD86). CD28 binding of the B7 proteins occurs after the presentation of antigen to the T cell receptor (TCR) via the peptide-MHC complex on the surface of an antigen presenting cell (APC). CTLA-4 also binds the B7 molecules with a higher affinity than does CD28. The B7/CTLA-4 interaction generates inhibitory signals down-regulating the response, and may prevent T cell activation by weak TCR signals. CD28 and CTLA-4 then elicit opposing signals in the regulation of T cell responsiveness and homeostasis. T cell activation leads to increased
Probab=93.65 E-value=0.32 Score=41.20 Aligned_cols=73 Identities=7% Similarity=0.051 Sum_probs=46.3
Q ss_pred CceEEEccccEEEEEEeeecCCcC-eEEEEeeCCE-Eccc-------cccccccCCe--eec----CCceEEEeccCCCC
Q psy12060 687 PKITIAAHRNLQLRCSAHTEELLD-VAYIWTHNGV-RIGN-------MDLNELETPN--INI----DGGLLEITNASFAD 751 (978)
Q Consensus 687 ~~~~~~~g~~~~l~C~~~~~p~~~-~~~~W~~~g~-~~~~-------~~~~~~~~~~--~~~----~~~~l~i~~~~~~d 751 (978)
....+..|..++|+|.+.+..... +.+.|.|... .+.. .........+ ... +.-.|+|.++..+|
T Consensus 6 ~~~lv~p~~sv~LsC~~sg~~~s~e~~~~wvRq~pg~lE~c~~~~~~g~~~~~~~~r~tcs~~~s~ntv~L~l~~L~a~D 85 (115)
T cd05721 6 SPVLASSNGAASLVCEYTYNGFSKEFRASLLKGADSAVEVCAVTGNMSNQLQTSLDGFNCDGTLGNEQVNFTLQNLRANQ 85 (115)
T ss_pred CCeEEcCCCCEEEEEEecCCccccEEEEEEEEeCCCCcEEEEEEeCCCccccccCCCeEEeEeCCCCEEEEEEcCCCHHH
Confidence 345677888999999998877666 8889987422 1100 0000000111 111 12378999999999
Q ss_pred CEEEEEEE
Q psy12060 752 AGEYECVV 759 (978)
Q Consensus 752 ~g~Y~c~a 759 (978)
.+.|.|..
T Consensus 86 Ta~Y~Ca~ 93 (115)
T cd05721 86 TDIYFCKI 93 (115)
T ss_pred CeEEEEEe
Confidence 99999976
No 440
>PHA03042 CD47-like protein; Provisional
Probab=93.29 E-value=0.23 Score=48.18 Aligned_cols=70 Identities=13% Similarity=0.205 Sum_probs=46.6
Q ss_pred CCCcEEEEEEEeec-----CCCeeEEEEcCccCCCCceeeecccEEEeCCCCCCCCeEEEEEEEeCCCceEEEEEEEE
Q psy12060 413 AGDKVRLECVAFGY-----PVPSYNWTRRGSPLPRNAYFENFNRILTIPNVKVEDQGEYICRASNDRSALESSVTISI 485 (978)
Q Consensus 413 ~G~~~~l~C~~~g~-----p~~~v~W~~~~~~l~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V 485 (978)
=.+++.+.|.++.. ....++|.+++..+-..+.. ...+|.+... ..=.|+|+|.|.+........+.|.-
T Consensus 30 CN~TV~IpC~v~n~~~~ni~~~~V~Wkf~~~~If~~n~t--n~aSL~~~f~-~~l~GNYTCEv~~l~n~gk~~IeLk~ 104 (286)
T PHA03042 30 CNKTIVIVCNLNLLIYYNISNIHINWKFNNKVIFKKNNT--NTSSLKFNFS-KNLSGNYTCEAINKFNKIKNTIELQY 104 (286)
T ss_pred cCceEEEEeecCChhhcCccceEEEEEeCCeeEEEecCC--cceEEEEecc-ccCCCceeEEEeecccCccEEEEEEE
Confidence 47889999998642 23469999999887433322 2345666543 34589999999986655555555543
No 441
>TIGR00868 hCaCC calcium-activated chloride channel protein 1. distributions. found a row in 1A13.INFO that was not parsed out
Probab=93.26 E-value=17 Score=43.42 Aligned_cols=91 Identities=15% Similarity=0.097 Sum_probs=56.2
Q ss_pred CCCCCceeecccccCcEEEEEEeCCCCCCCCCcceEEEEEEecCC---ccceee--------eeeeccceeEEEEEcCCC
Q psy12060 886 YQAPSRIGGGGGKIGDLSISWEPLPREKQNAPNIYYKIFWRKKND---TEFQSE--------TLKEYGNVGIAVVRIPSE 954 (978)
Q Consensus 886 ~~~P~~~~~~~~~~~si~v~W~~p~~~~~~g~i~~Y~i~~~~~~~---~~~~~~--------~~~~~~~~~~~~~~l~~L 954 (978)
|+.-..+.+. .....|.|+|..|-.+...|...+|.|.|...-. +++... .....+......|.....
T Consensus 756 P~rItDL~~~-~~~~~v~LsWTAPG~d~D~G~a~~y~ir~s~~~~~l~~~f~~a~~vn~~~~~P~~ags~e~~~f~~~~~ 834 (863)
T TIGR00868 756 PSKITDLEAG-FQGDNIILTWTAPGDVLDHGRADRYIIRISTSILDLRDDFNDATQVNTTDLIPKEANSKEVFVFKPEGI 834 (863)
T ss_pred CccceeeEEe-ecCCEEEEEeeCCCccCCCCccceEEEEecCCHHHHHhhhccccccccCCcCCCCCCceeEEEEeCCcc
Confidence 3334455553 3444599999996666688999999999976531 111110 011112222344555553
Q ss_pred --CceeeEEEEEEEecCCCC-CCCCC
Q psy12060 955 --FYYTEYEVKVQAINDVGP-GPESE 977 (978)
Q Consensus 955 --~p~t~Y~~~V~A~n~~G~-gp~S~ 977 (978)
+.++.|.|-|+|++..|. |..|+
T Consensus 835 ~~~~~~~~~~ai~a~d~~~~~s~~sn 860 (863)
T TIGR00868 835 PIENGTDLFIAVQAIDKANLTSEVSN 860 (863)
T ss_pred cccCCeEEEEEEEEEccccccccccc
Confidence 368899999999999976 66664
No 442
>PF09294 Interfer-bind: Interferon-alpha/beta receptor, fibronectin type III; InterPro: IPR015373 Members of this family adopt a secondary structure consisting of seven beta-strands arranged in an immunoglobulin-like beta-sandwich, in a Greek-key topology. They are required for binding to interferon-alpha []. ; PDB: 1A21_A 3LQM_B 3ELA_T 1AHW_C 2A2Q_T 1TFH_B 1FAK_T 1WSS_T 1W2K_T 2FIR_T ....
Probab=93.23 E-value=0.17 Score=43.37 Aligned_cols=71 Identities=21% Similarity=0.234 Sum_probs=45.1
Q ss_pred CCCCceEEEEeeCCeeEEEeecCC----CCCC--------CceeEEEEEeeccccCceEecccccceeeeecCCceeeEE
Q psy12060 779 GLPGGVQVVEVHKTSATIQWTDGA----TNGR--------PITHYKIIARTNWNSTWFNVSEHVIGKEVDRYTGRKEASI 846 (978)
Q Consensus 779 ~~P~~~~~~~~~~~~v~l~W~~p~----~~~~--------~i~~Y~v~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~ 846 (978)
+||. +.+ ...+..+.|.+.+|. ..+. +-..|.|.|...++..-... .......+++
T Consensus 4 gPP~-v~v-~~~~~~l~V~i~~P~~~~~~~~~~~~l~~~~~~~~Y~v~~~~~~~~~~~~~----------~~~~~~~~~l 71 (106)
T PF09294_consen 4 GPPS-VNV-SSCGGSLHVTIKPPMTPLRAGGKNSSLRDIYPSLSYNVSYWKNGSNEKKKE----------IETKNSSVTL 71 (106)
T ss_dssp -SSE-EEE-EEETTEEEEEEEESEEEEECSSSEEEHHHHHGG-EEEEEEEETTTSCEEEE----------EESSSEEEEE
T ss_pred cCCE-EEE-EECCCEEEEEEECCCcccccCCCCCcHHHhCCCeEEEEEEEeCCCccceEE----------EeecCCEEEE
Confidence 3553 666 778899999999986 1111 13569999887665411111 1123455688
Q ss_pred eeccCCCceeEEEEEE
Q psy12060 847 ENVLVPWSTYEFKVIA 862 (978)
Q Consensus 847 ~~~L~p~~~Y~~~v~A 862 (978)
.+ |.|++.|-|+|.|
T Consensus 72 ~~-L~p~t~YCv~V~~ 86 (106)
T PF09294_consen 72 SD-LKPGTNYCVSVQA 86 (106)
T ss_dssp ES---TTSEEEEEEEE
T ss_pred eC-CCCCCCEEEEEEE
Confidence 99 9999999999999
No 443
>KOG0613|consensus
Probab=92.99 E-value=1.2 Score=53.59 Aligned_cols=211 Identities=18% Similarity=0.132 Sum_probs=115.7
Q ss_pred EeccCCCCCEEEEEEEEcCCCceeeeEEEEEcCCCCCCCceEEEEeeCCeeEEEeecCC-CCCCCceeEEEEEeeccccC
Q psy12060 744 ITNASFADAGEYECVVKSTVGKISTKTTVIVEGPPGLPGGVQVVEVHKTSATIQWTDGA-TNGRPITHYKIIARTNWNST 822 (978)
Q Consensus 744 i~~~~~~d~g~Y~c~a~n~~G~~s~~~~l~v~~~P~~P~~~~~~~~~~~~v~l~W~~p~-~~~~~i~~Y~v~~~~~~~~~ 822 (978)
+......+.+.|.-...+.++-..........+|+.+|.+-..+.+....+...|.++. +++..+.+|+|+.+..+...
T Consensus 106 v~~~~ad~~~~~~~e~~~~i~~~~~~~v~~~e~pd~~~~~~~sv~~~~~~v~~~~~~~~~d~~~k~~~~iie~~~~g~s~ 185 (1205)
T KOG0613|consen 106 VGDEYADDRPIHLVERKALIDVVPSPEVCQQEKPDPPPSNRESVLVHRARVLPAWRPPREDGGRKREEYIIERRQAGRSP 185 (1205)
T ss_pred cccccccccccccccccccCCccccchhhhhcCCCCCCCCccceeecCceecccccCCccCccceeecceEEEEeccCCC
Confidence 33333445555555555566633444455556777788787777888889999999877 44568899999999988887
Q ss_pred ceEecccccceeeeecCCceeeEEeeccCCCceeEEEEEEecCCccCCCCCCCCCCCCCCCCCCCCCCceeecccccCcE
Q psy12060 823 WFNVSEHVIGKEVDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPSPQYNTPADKPYQAPSRIGGGGGKIGDL 902 (978)
Q Consensus 823 w~~~~~~~~~~~~~~~~~~~~~~~~~~L~p~~~Y~~~v~A~N~~G~g~~s~~~~~~~t~~~~P~~~P~~~~~~~~~~~si 902 (978)
|......... ...+.. +. |.++|+++-..|..++-... ........|++.|.--.....+.--+
T Consensus 186 ~~~~l~~~~~----------~s~~~~-a~----~e~~v~~v~s~gqp~~~~~~-~~~g~~i~~~~~~~~s~t~e~s~~~i 249 (1205)
T KOG0613|consen 186 WLKRLTQPTD----------DSTDTD-AH----YESRVRAVVSAGQPEPLERW-EILGELIAPGSAPSMSVTLEASDRKI 249 (1205)
T ss_pred cccccccccC----------Ccceec-cc----cceeEEEEEecCCCccchhh-hhcccccCCCCccccccccchhheee
Confidence 7655443321 111222 22 56666666666655543321 11111223334443333333444456
Q ss_pred EEEEEeCCCCCCCCCcceEEEEEEe-cCCccceeeeeeeccceeEEEEEcCCCCceeeEEEEEEEecCCCCCC
Q psy12060 903 SISWEPLPREKQNAPNIYYKIFWRK-KNDTEFQSETLKEYGNVGIAVVRIPSEFYYTEYEVKVQAINDVGPGP 974 (978)
Q Consensus 903 ~v~W~~p~~~~~~g~i~~Y~i~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~L~p~t~Y~~~V~A~n~~G~gp 974 (978)
.+.|..+ +...-..|.+|.++-.. .+...|.......... ...++..-.++-+|.++|..+=..|.+-
T Consensus 250 ~~~l~~~-~G~~~~~~~~~l~e~~~~~~~~t~~i~~~~~~~~---~s~t~~~~~~~~q~~~~v~~~~~i~~~~ 318 (1205)
T KOG0613|consen 250 QLTLRAP-RGPYSAHILGYLIEQRKHKGGNTKTIQNDGPEPE---LSWTVADKRQGCQDRFKVTEEAPIGKGK 318 (1205)
T ss_pred eEEeecC-CCchHHHHhcchhhhcccCCCccccccccCCccc---cceeeecccCCcccceeeeEEeeccccc
Confidence 6666652 22223346688876544 3344443322211111 1222233355678888888777666553
No 444
>KOG4597|consensus
Probab=92.45 E-value=0.2 Score=52.41 Aligned_cols=82 Identities=13% Similarity=0.182 Sum_probs=62.3
Q ss_pred cceeecCCCeEEEEEeeccCCCCeeEEee---CCEEecCC-----CcEEEeecCcEEEccccCCCCEEEEEEEEeCCcee
Q psy12060 596 SETYAGEGGNVTIFCNPEAAPKPKFVWKK---DGNIIGSG-----GRRKIFENGNLLISPVSRDDSGIYSCTATNVHGMD 667 (978)
Q Consensus 596 ~~~~~~~g~~~~l~C~~~~~p~~~i~W~~---~g~~~~~~-----~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~ 667 (978)
....+..+++.+++|.+.|.+.+.|+|.+ ++..+... .+..+.+...|.|-+....|+|.|+|.|.+..|..
T Consensus 204 a~w~vg~wetcS~tCg~~G~q~r~V~c~qv~anr~~vv~~~nq~~e~p~vtstcql~ic~ewq~~a~w~tCs~rcg~g~~ 283 (560)
T KOG4597|consen 204 AEWFVGDWETCSSTCGVQGRQYRVVTCEQVFANRENVVMRPNQTVENPVVTSTCQLVICNEWQADAGWYTCSARCGAGFL 283 (560)
T ss_pred chhhcccchhhcccccccCCcCceeeeehhhccccceeecCccccCCcceeeeeeEEEcchhhcCCCceeecccccccee
Confidence 34457789999999999999999999975 33322211 12223344569999999999999999999999999
Q ss_pred eeeEEEEEEe
Q psy12060 668 ESKGRLIVLH 677 (978)
Q Consensus 668 ~~~~~l~v~~ 677 (978)
...+.+.+..
T Consensus 284 ~rdv~c~s~~ 293 (560)
T KOG4597|consen 284 RRDVPCSSVK 293 (560)
T ss_pred eccceeeeec
Confidence 8888777654
No 445
>PHA02982 hypothetical protein; Provisional
Probab=92.31 E-value=0.99 Score=41.89 Aligned_cols=115 Identities=13% Similarity=0.210 Sum_probs=69.1
Q ss_pred CCCCCCcEEEEEEEe-ecCCCeeEEEEcCccCCC----------------C---c----eeeecccEEEeCCCCCCCCeE
Q psy12060 410 APKAGDKVRLECVAF-GYPVPSYNWTRRGSPLPR----------------N---A----YFENFNRILTIPNVKVEDQGE 465 (978)
Q Consensus 410 ~v~~G~~~~l~C~~~-g~p~~~v~W~~~~~~l~~----------------~---~----~~~~~~~~L~i~~~~~~d~G~ 465 (978)
....|++|.|.|... +..-.+..|++++..... + . ..+...++|+|.++..+..|-
T Consensus 35 ~a~vd~~V~L~C~~~~~~~i~~~~W~~~~~~~la~~~~~~~~iN~~~y~~~~~kd~y~~sv~g~~STLTIkk~~i~N~GC 114 (251)
T PHA02982 35 NATVDQEVKLQCLFKDADEISRAMWKGDAGFMLAQEANGGTGINAFNYVPGPYKDKYALSVSGNSSTFTMKKPDPQNLGC 114 (251)
T ss_pred hccCCCcEEEEecCCCcchhhhheeeCCCCeEEEeeecCcceeccccccCCccceeEEEEEeccceeEEeccCCcccCCc
Confidence 345799999999853 233347899986543211 0 0 123446789999999999999
Q ss_pred EEEEEEeCCCceEE-EEEEEEEeeceeeccCCcccccCCC-ceeEEEEeecCCCCeeEEeECCEECC
Q psy12060 466 YICRASNDRSALES-SVTISIQAEPNFTIPLTDKHMDNQA-DLTWTCEAFGVPDVTYSWFRNGELLN 530 (978)
Q Consensus 466 Y~C~a~n~~g~~~~-~~~l~V~~~p~~~~~~~~~~~~~g~-~~~l~C~~~~~p~~~i~W~~~g~~~~ 530 (978)
|+|++....+..+. .--|.|+....+. ...++. .-.+.|-+-+....-..|.-+|....
T Consensus 115 Ytc~~ks~~~k~E~c~kCl~V~~~~V~~------~W~e~nNeT~V~CyVgS~~~dvp~W~V~GVvtt 175 (251)
T PHA02982 115 FTCEAKDAEGKEETCEKCLEIQKEDILY------VVEEHNNETIITCFVGSKHGDVPRFIVAGIVTT 175 (251)
T ss_pred eEEEEecCCCchheeheeeeEecceEEE------EEEecCCeEEEEEEEEeccCCCccEEEeeEEec
Confidence 99999986554432 3334442221111 111233 34678987554333338988876433
No 446
>COG3401 Fibronectin type 3 domain-containing protein [General function prediction only]
Probab=92.26 E-value=5.5 Score=40.54 Aligned_cols=192 Identities=13% Similarity=0.047 Sum_probs=98.7
Q ss_pred CCEEEEEEEEcCCCceeeeEEEEEcCC---CCCCCceEEEEeeCCeeEEEeecCCCCCCCceeEEEEEeeccccCceEec
Q psy12060 751 DAGEYECVVKSTVGKISTKTTVIVEGP---PGLPGGVQVVEVHKTSATIQWTDGATNGRPITHYKIIARTNWNSTWFNVS 827 (978)
Q Consensus 751 d~g~Y~c~a~n~~G~~s~~~~l~v~~~---P~~P~~~~~~~~~~~~v~l~W~~p~~~~~~i~~Y~v~~~~~~~~~w~~~~ 827 (978)
....|...+.+..+..+.++...-..+ |..-.+++++...++.+.|+|..+...+ +|.|+....++.......
T Consensus 135 ~~~~~~Iia~~f~~~~sfsf~gVE~~~~~~P~ei~~~~~~~d~~~~i~ls~dg~~~~~----yy~IY~~~~g~e~~~~ia 210 (343)
T COG3401 135 EKYMELIIAADFQMGKSFSFTGVEATPKAEPKEITNVRVSFDLGNNIELSEDGSEAED----YYRIYASDSGNEEYGFIA 210 (343)
T ss_pred cceeeeEEeecccccceeeeeeeecccccCCceeeeeeeecCCCCcceeeccCccccc----eEEEeccCCcccccccee
Confidence 344566677666665555433222222 2222455666677889999998654422 788876665544332221
Q ss_pred ccccceeeeecCCceee--EEeeccCCCceeEEEEEEe-cCCccCCCCCCCCCCCCCCCCC-CCCCCceeecccccCcEE
Q psy12060 828 EHVIGKEVDRYTGRKEA--SIENVLVPWSTYEFKVIAG-NELGYGEPSSPSPQYNTPADKP-YQAPSRIGGGGGKIGDLS 903 (978)
Q Consensus 828 ~~~~~~~~~~~~~~~~~--~~~~~L~p~~~Y~~~v~A~-N~~G~g~~s~~~~~~~t~~~~P-~~~P~~~~~~~~~~~si~ 903 (978)
.. ..+.+ ...+ | +..|.+.|.++ |..+.+..+.....-.+....+ +.+|... ...+.+.
T Consensus 211 ~t----------~~n~y~d~~eg-l--ga~~~y~VTtVd~~~~es~lp~~~t~~~~~g~~e~pt~~g~t----~~~s~i~ 273 (343)
T COG3401 211 QT----------TENSYYDVKEG-L--GAVEYYKVTTVDNTGFESDLPNEPTVGETGGRYEVPTIPGET----TEASFIG 273 (343)
T ss_pred ec----------cccchhhhhhc-c--CceeEEEEEEEcCCcceeccCCccccccccCCcccccCCCce----eeeeeee
Confidence 11 11111 1223 3 56677777777 5777777666432222322221 1222222 2234567
Q ss_pred EEEEeCCCCCCCCCcceEEEEEEecCCccceeeeeeeccceeEEEEEcCCCCceeeEEEEEEEecCCCCCC
Q psy12060 904 ISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETLKEYGNVGIAVVRIPSEFYYTEYEVKVQAINDVGPGP 974 (978)
Q Consensus 904 v~W~~p~~~~~~g~i~~Y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~p~t~Y~~~V~A~n~~G~gp 974 (978)
|.|+.-+. . ....|.++--..+ .. ......+.....+..+.++..|.+.|.|++.+|.+.
T Consensus 274 V~~E~~~~---~-~av~ytvyr~~~g-~~------~~~f~it~~d~~d~~~ltg~~~~y~v~~v~~~gls~ 333 (343)
T COG3401 274 VAAEQNQL---R-QAVTYTVYRVEDG-TP------TKFFTITETDGQDNDMLTGVEYRYEVVAVDKAGLSS 333 (343)
T ss_pred EEeccccc---c-eeeEEeeeeccCC-Cc------ceeeeeeeccccchhhccccceeEEEEEeccccccc
Confidence 88887211 1 1234444322221 10 011122223344556778899999999999999853
No 447
>PHA03042 CD47-like protein; Provisional
Probab=92.18 E-value=0.57 Score=45.65 Aligned_cols=68 Identities=13% Similarity=0.326 Sum_probs=45.7
Q ss_pred CCceeEEEEeecC-----CCCeeEEeECCEECCCCCCCCCCCCcEEEecCEEEEEeCCCCCCCeEEEEEEEcCCCceeeE
Q psy12060 503 QADLTWTCEAFGV-----PDVTYSWFRNGELLNSETLPLEDQDRYFIQDNVLTIRYLNPERDPAMYQCRAKNQLKTRYSS 577 (978)
Q Consensus 503 g~~~~l~C~~~~~-----p~~~i~W~~~g~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~d~G~Y~C~a~n~~g~~~~~ 577 (978)
.+++.+.|.+... ....+.|..++..+-.. +.. ...+|.+.... .-.|+|+|+|.+........
T Consensus 31 N~TV~IpC~v~n~~~~ni~~~~V~Wkf~~~~If~~-------n~t--n~aSL~~~f~~--~l~GNYTCEv~~l~n~gk~~ 99 (286)
T PHA03042 31 NKTIVIVCNLNLLIYYNISNIHINWKFNNKVIFKK-------NNT--NTSSLKFNFSK--NLSGNYTCEAINKFNKIKNT 99 (286)
T ss_pred CceEEEEeecCChhhcCccceEEEEEeCCeeEEEe-------cCC--cceEEEEeccc--cCCCceeEEEeecccCccEE
Confidence 5789999998642 35679999999877522 111 12357776653 56899999999866555444
Q ss_pred EEEE
Q psy12060 578 AQLR 581 (978)
Q Consensus 578 ~~l~ 581 (978)
.++.
T Consensus 100 IeLk 103 (286)
T PHA03042 100 IELQ 103 (286)
T ss_pred EEEE
Confidence 4443
No 448
>PF10179 DUF2369: Uncharacterised conserved protein (DUF2369); InterPro: IPR019326 This is a proline-rich region of a group of proteins found from plants to fungi. The function is largely unknown, although the entry contains Fibronectin type-III domain-containing protein C4orf31, which promotes matrix assembly and cell adhesiveness.
Probab=92.14 E-value=7.3 Score=39.74 Aligned_cols=144 Identities=17% Similarity=0.170 Sum_probs=76.0
Q ss_pred eEEEEeeCCEEccccccccccCCeeecCCceEEEeccCCCCCEEEEEEE--EcCCCceeeeEEEE-E------cCCCCCC
Q psy12060 711 VAYIWTHNGVRIGNMDLNELETPNINIDGGLLEITNASFADAGEYECVV--KSTVGKISTKTTVI-V------EGPPGLP 781 (978)
Q Consensus 711 ~~~~W~~~g~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~c~a--~n~~G~~s~~~~l~-v------~~~P~~P 781 (978)
+.+.-+++|..+.... ...+-..+.+.++...+ .|..+. .|.... ...+.+. . ..-|..|
T Consensus 107 V~v~i~r~gk~l~~~~--------~v~~~~~f~l~~~~~g~--~Yliri~~~~~~e~-~~~~kV~aast~~~~~~~P~LP 175 (300)
T PF10179_consen 107 VRVEISRNGKILLSQK--------NVEGLRHFRLSGVKPGE--RYLIRIQISNSDEG-PSTFKVQAASTNPSKQPYPQLP 175 (300)
T ss_pred EEEEEEECCeEEeeee--------cccceEEEEECCCCCCC--eEEEEEEccCCCCC-ceEEEEEEecCCcccCCCCCCC
Confidence 4556667887765420 11112356665554433 455555 554332 2223333 2 2347778
Q ss_pred CceEEEEe----eCCeeEEEeecCCCCCCCceeEEEEEeecccc--C------ceEecc----cccceeee---e-----
Q psy12060 782 GGVQVVEV----HKTSATIQWTDGATNGRPITHYKIIARTNWNS--T------WFNVSE----HVIGKEVD---R----- 837 (978)
Q Consensus 782 ~~~~~~~~----~~~~v~l~W~~p~~~~~~i~~Y~v~~~~~~~~--~------w~~~~~----~~~~~~~~---~----- 837 (978)
.+..+... +-++++|.|.+..+.. ..|-|+.+..... . +..+.. ........ .
T Consensus 176 ~d~~Ik~f~~lrtC~SvTIAW~~s~d~~---~kYCvy~~~~~~~~~~~~~~~~~n~C~~~~sr~k~e~v~Ck~~~~~n~~ 252 (300)
T PF10179_consen 176 DDTSIKEFNKLRTCNSVTIAWLGSPDRS---IKYCVYRREEHSNYQERSVSRMPNQCLGPESRKKSEKVLCKYFHSPNSS 252 (300)
T ss_pred CCCceeEEcCCcccceEEEEEecCCCCC---ceEEEEEEEecCchhhhhhcccCccCCCCCccccceEEEEEEEcCCccc
Confidence 88777443 3489999999754422 5688877754332 1 111110 00000011 0
Q ss_pred --cC-CceeeEEeeccCCCceeEEEEEEecCCccC
Q psy12060 838 --YT-GRKEASIENVLVPWSTYEFKVIAGNELGYG 869 (978)
Q Consensus 838 --~~-~~~~~~~~~~L~p~~~Y~~~v~A~N~~G~g 869 (978)
.. .-...+|.+ |+|++.|-|-|.|.-..|.+
T Consensus 253 ~~~~~~v~tetI~~-L~PG~~Yl~dV~~~~~~G~s 286 (300)
T PF10179_consen 253 EDPQRAVTTETIKG-LKPGTTYLFDVYVNGPSGQS 286 (300)
T ss_pred cccccccceeeccc-CCCCcEEEEEEEEecCCCce
Confidence 01 112346889 99999999999998766644
No 449
>KOG4597|consensus
Probab=91.79 E-value=0.29 Score=51.32 Aligned_cols=89 Identities=12% Similarity=0.031 Sum_probs=62.8
Q ss_pred cCCcccccCCCceeEEEEeecCCCCeeEEeE---CCEECCCCCCCCCCCCcEEEecCEEEEEeCCCCCCCeEEEEEEEcC
Q psy12060 494 PLTDKHMDNQADLTWTCEAFGVPDVTYSWFR---NGELLNSETLPLEDQDRYFIQDNVLTIRYLNPERDPAMYQCRAKNQ 570 (978)
Q Consensus 494 ~~~~~~~~~g~~~~l~C~~~~~p~~~i~W~~---~g~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~d~G~Y~C~a~n~ 570 (978)
-+....+..+++..++|.+.|.+.+.|+|.+ |+..+...... ............|.|-+..+ .|+|.|+|.+.+.
T Consensus 202 cpa~w~vg~wetcS~tCg~~G~q~r~V~c~qv~anr~~vv~~~nq-~~e~p~vtstcql~ic~ewq-~~a~w~tCs~rcg 279 (560)
T KOG4597|consen 202 CPAEWFVGDWETCSSTCGVQGRQYRVVTCEQVFANRENVVMRPNQ-TVENPVVTSTCQLVICNEWQ-ADAGWYTCSARCG 279 (560)
T ss_pred CcchhhcccchhhcccccccCCcCceeeeehhhccccceeecCcc-ccCCcceeeeeeEEEcchhh-cCCCceeeccccc
Confidence 3445567889999999999999999999986 33333211000 01111223344788888886 8999999999999
Q ss_pred CCceeeEEEEEEEE
Q psy12060 571 LKTRYSSAQLRVLT 584 (978)
Q Consensus 571 ~g~~~~~~~l~v~~ 584 (978)
.|.....+.+.+..
T Consensus 280 ~g~~~rdv~c~s~~ 293 (560)
T KOG4597|consen 280 AGFLRRDVPCSSVK 293 (560)
T ss_pred cceeeccceeeeec
Confidence 99888887777664
No 450
>PHA02982 hypothetical protein; Provisional
Probab=91.74 E-value=1.2 Score=41.40 Aligned_cols=123 Identities=15% Similarity=0.204 Sum_probs=69.5
Q ss_pred cccccCCCceeEEEEeec-CCCCeeEEeEC-CEECCCC-----CC------CCCCCCcE----EEecCEEEEEeCCCCCC
Q psy12060 497 DKHMDNQADLTWTCEAFG-VPDVTYSWFRN-GELLNSE-----TL------PLEDQDRY----FIQDNVLTIRYLNPERD 559 (978)
Q Consensus 497 ~~~~~~g~~~~l~C~~~~-~p~~~i~W~~~-g~~~~~~-----~~------~~~~~~~~----~~~~~~l~i~~~~~~~d 559 (978)
+.....+++|.|+|.... .......|+++ +..+... .+ +......+ ....++|+|..+.. +.
T Consensus 33 dv~a~vd~~V~L~C~~~~~~~i~~~~W~~~~~~~la~~~~~~~~iN~~~y~~~~~kd~y~~sv~g~~STLTIkk~~i-~N 111 (251)
T PHA02982 33 DVNATVDQEVKLQCLFKDADEISRAMWKGDAGFMLAQEANGGTGINAFNYVPGPYKDKYALSVSGNSSTFTMKKPDP-QN 111 (251)
T ss_pred hhhccCCCcEEEEecCCCcchhhhheeeCCCCeEEEeeecCcceeccccccCCccceeEEEEEeccceeEEeccCCc-cc
Confidence 445678999999998542 23557889884 3333211 00 00011112 12345899999997 89
Q ss_pred CeEEEEEEEcCCCceee-EEEEEEEEcCCccccCCCCcceeecCCCeEEEEEeeccCCCCeeEEeeCCEE
Q psy12060 560 PAMYQCRAKNQLKTRYS-SAQLRVLTLKPSFKKRPLESETYAGEGGNVTIFCNPEAAPKPKFVWKKDGNI 628 (978)
Q Consensus 560 ~G~Y~C~a~n~~g~~~~-~~~l~v~~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~i~W~~~g~~ 628 (978)
.|-|+|++....+.... ..-+.|+.-.-.+.. ........+.|-+-....+-..|.-+|..
T Consensus 112 ~GCYtc~~ks~~~k~E~c~kCl~V~~~~V~~~W--------~e~nNeT~V~CyVgS~~~dvp~W~V~GVv 173 (251)
T PHA02982 112 LGCFTCEAKDAEGKEETCEKCLEIQKEDILYVV--------EEHNNETIITCFVGSKHGDVPRFIVAGIV 173 (251)
T ss_pred CCceEEEEecCCCchheeheeeeEecceEEEEE--------EecCCeEEEEEEEEeccCCCccEEEeeEE
Confidence 99999999986654433 333444210001111 11234456789876554443489877754
No 451
>KOG4802|consensus
Probab=91.50 E-value=1.4 Score=45.49 Aligned_cols=127 Identities=18% Similarity=0.136 Sum_probs=76.1
Q ss_pred CceEEEeccCCCCCEEEEEEEEcCCCcee---ee--EEEEE-cCCCCCCCceEEEEe--eCCeeEEEeecCCCCCCCcee
Q psy12060 739 GGLLEITNASFADAGEYECVVKSTVGKIS---TK--TTVIV-EGPPGLPGGVQVVEV--HKTSATIQWTDGATNGRPITH 810 (978)
Q Consensus 739 ~~~l~i~~~~~~d~g~Y~c~a~n~~G~~s---~~--~~l~v-~~~P~~P~~~~~~~~--~~~~v~l~W~~p~~~~~~i~~ 810 (978)
........+.+.-...++..|.|..|... .+ +...- ..+|.+|.++.+..+ .+.-.++-|..|...+-||..
T Consensus 208 e~~~~~t~~rPgRwyefrvaavn~~G~rGFs~PSkpf~ssk~pkaPp~P~dl~l~~v~~dG~~~~~v~w~P~~sdlPv~~ 287 (516)
T KOG4802|consen 208 ENTYIFTDMRPGRWYEFRVAAVNAYGFRGFSEPSKPFPSSKNPKAPPSPNDLKLIGVQFDGRYMLKVVWCPSKSDLPVEK 287 (516)
T ss_pred CceeeeeecCcceeEEEEEeeeecccccccCCCCCCCCCCCCCCCCcCcccceeeeeeecceEEEEEEeCCCCCCCccee
Confidence 34666677777777788888899888422 11 22221 234556667765543 333334444445556779999
Q ss_pred EEEEEeeccccCceEecccccceeeeecCCceeeEEeeccCCCceeEEEEEEecCCccCCC
Q psy12060 811 YKIIARTNWNSTWFNVSEHVIGKEVDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEP 871 (978)
Q Consensus 811 Y~v~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~L~p~~~Y~~~v~A~N~~G~g~~ 871 (978)
|.|.|...-+.. ...+.. .........++.|.+ |.|+..|.+.|.|....|.+..
T Consensus 288 Yki~Ws~~v~s~----k~~m~t-ks~~~k~thq~si~~-L~Pns~Y~VevqAi~y~g~~rL 342 (516)
T KOG4802|consen 288 YKITWSLYVNSA----KASMIT-KSSYVKDTHQFSIKE-LLPNSSYYVEVQAISYLGSRRL 342 (516)
T ss_pred eEEEeehhhhhh----hhhccc-ccceeeccchhhhhh-cCCCCeEEEEEEEEEeccCccc
Confidence 999886432110 011111 111112233455889 9999999999999999997764
No 452
>cd03519 Link_domain_HAPLN_module_2 Link_domain_HAPLN_module_2; this link domain is found in the second link module of proteins similar to the vertebrate HAPLN (hyaluronan/HA and proteoglycan binding link) protein family which includes cartilage link protein. The link domain is a HA-binding domain. HAPLNs contain two contiguous link modules. Both link modules of cartilage link protein are involved in interaction with HA. In cartilage, a chondroitin sulfate proteoglycan core protein (CSPG) aggrecan forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Aggregates with other CSPGs substituting for aggregan may contribute to the structural integrity of many different tissues. Members of the vertebrate HAPLN gene family are physically linked adjacent to CSPG genes.
Probab=90.63 E-value=0.22 Score=39.65 Aligned_cols=23 Identities=22% Similarity=0.284 Sum_probs=21.0
Q ss_pred CCCHHHHHHHhhhcCCeeeeeCC
Q psy12060 48 LKTRNDAKLNCKSLDSDLANVND 70 (978)
Q Consensus 48 ~~~~~~A~~~C~~~~~~L~~i~~ 70 (978)
+.||.||++.|+..|+.||+...
T Consensus 10 ~l~f~eA~~aC~~~ga~lAs~~Q 32 (91)
T cd03519 10 KLTFSEAVAACQRDGAQIAKVGQ 32 (91)
T ss_pred ccCHHHHHHHHHHcCCEeCCHHH
Confidence 69999999999999999999843
No 453
>KOG1026|consensus
Probab=90.60 E-value=0.22 Score=56.74 Aligned_cols=245 Identities=17% Similarity=0.169 Sum_probs=133.8
Q ss_pred CCCCcEEEEEEEeecCCCeeEEEEcCccCCCCceeee-----cccEEEeCCCCCCCCeEEEEEEEeCCCceEEEEEEEEE
Q psy12060 412 KAGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYFEN-----FNRILTIPNVKVEDQGEYICRASNDRSALESSVTISIQ 486 (978)
Q Consensus 412 ~~G~~~~l~C~~~g~p~~~v~W~~~~~~l~~~~~~~~-----~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~ 486 (978)
..++...+.|.+.+.+...+.|.++............ .+..+...+....+.|.+.|.+.+..-.......+.+.
T Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~l~~~~ 144 (774)
T KOG1026|consen 65 IFIENGQLLCIVSGNDVENYTGLRNLTIVVSGLRFSQPRAFHYNSRLRRDNLSTNDTGVLGSLSTNGFETLSLTELSLVG 144 (774)
T ss_pred HHHhhhhhcccccCCCcccchhhhccCcccchhheecccceeccccccccccchhhhccccccccccccccccchhhhcc
Confidence 4577788888888776668888887766544332211 12235555555566666666655432211111100000
Q ss_pred e----------------------------------------------eceeeccCCcccccCCCceeEEEEeecCCCCee
Q psy12060 487 A----------------------------------------------EPNFTIPLTDKHMDNQADLTWTCEAFGVPDVTY 520 (978)
Q Consensus 487 ~----------------------------------------------~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~i 520 (978)
. .+...+......+..|..+++.|...+.|.+.+
T Consensus 145 ~~~~~~~~~~~~~~~~e~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~c~~~~~~vp~~ 224 (774)
T KOG1026|consen 145 NPFTCSCSIRWLDRYREDGFCVPYRGLACLNFLSNGTVANESIQLCGEIENRIRAANLTVEEGSSITLKCSQAGIPVPCH 224 (774)
T ss_pred CCCCcchhhhHHhhhcccCCCCCchhhHHHhhcCCceehhhhhhhhcchhhhhhhhhhhhcccchheeeeecccCCCcce
Confidence 0 001111111234567899999999999999999
Q ss_pred EEeECCEECCCCCCCCCCCCcEEEecCEEEEEeCCCCCCCeEEEEEEEcCCCceeeEEEEEEEEcCCccccCCCCcceee
Q psy12060 521 SWFRNGELLNSETLPLEDQDRYFIQDNVLTIRYLNPERDPAMYQCRAKNQLKTRYSSAQLRVLTLKPSFKKRPLESETYA 600 (978)
Q Consensus 521 ~W~~~g~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~~p~~~~~~~~~~~~~ 600 (978)
.|+.++.......... . +-. .... +- -.+.|.+.|..+....++.+.+.. ++.........
T Consensus 225 ~~~~~~~~~~~~~~~~----~--~c~-~~~~--~~-----~~~~c~~E~~~~~~~~~v~~~~~~-p~~~~~~~~~~---- 285 (774)
T KOG1026|consen 225 YWFPNCLASSNTNQTS----S--LCR-SECE--VL-----ENDLCIAENAVARSNPSILLVVDL-PKAEVLLCSPL---- 285 (774)
T ss_pred eeecccccccCCCccc----c--ccc-ccce--ee-----echhhHHHHhhhhcCceeeeEEec-ccccccCCCCc----
Confidence 9998776554321100 0 000 1111 10 118999999988877766666653 22221111100
Q ss_pred cCCCeEEEEEee---ccCCCCeeEEeeCCEEecCCCcEEEeec---CcEEEccccCCCCEEEEEEEEeCCceeeeeEEEE
Q psy12060 601 GEGGNVTIFCNP---EAAPKPKFVWKKDGNIIGSGGRRKIFEN---GNLLISPVSRDDSGIYSCTATNVHGMDESKGRLI 674 (978)
Q Consensus 601 ~~g~~~~l~C~~---~~~p~~~i~W~~~g~~~~~~~~~~~~~~---~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~ 674 (978)
++ .-.|.. .+.|.+...|..++..+...+....... +-+........+.|.|+|.+.+..|.........
T Consensus 286 --~~--~~~C~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~t~s~~~~C~~~~~~~h~~~~~~~~~~e~~~g~~~~r~~g~ 361 (774)
T KOG1026|consen 286 --SD--HHNCIPIGITANPGPALHWCYNGSGLNYRGTVCVTKSGKEQCLPWNDPPHSHNGNYTLFPELPGGKNYCRNPGG 361 (774)
T ss_pred --cc--cCceeeeeccCCCCCceeeeecCccceEecccccccccCcCCcccCcCcccccCcceeeecccCccccccCcCc
Confidence 00 223443 3556678889887765432221111111 2244444466788999999999988887766666
Q ss_pred EEeCC
Q psy12060 675 VLHGP 679 (978)
Q Consensus 675 v~~~p 679 (978)
+...|
T Consensus 362 ~~~~P 366 (774)
T KOG1026|consen 362 FMSRP 366 (774)
T ss_pred cccCC
Confidence 65555
No 454
>PF09240 IL6Ra-bind: Interleukin-6 receptor alpha chain, binding; InterPro: IPR015321 Members of this entry adopt a structure consisting of an immunoglobulin-like beta-sandwich, with seven strands in two beta-sheets, in a Greek-key topology. They are required for binding to the cytokine Interleukin-6 []. ; PDB: 1N26_A 1P9M_C 3LB6_C 1PVH_A 3L5H_A 1BQU_A 1I1R_A 3QT2_B 3BPN_C 3BPO_C ....
Probab=90.30 E-value=3.4 Score=34.60 Aligned_cols=84 Identities=13% Similarity=0.159 Sum_probs=52.8
Q ss_pred CCCceeecccccCcEEEEEEeCCCCCCCCCcceEEEEEEecCCccceeeeeeeccc--eeEEEEEcCCC--CceeeEEEE
Q psy12060 888 APSRIGGGGGKIGDLSISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETLKEYGN--VGIAVVRIPSE--FYYTEYEVK 963 (978)
Q Consensus 888 ~P~~~~~~~~~~~si~v~W~~p~~~~~~g~i~~Y~i~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~L--~p~t~Y~~~ 963 (978)
+|.|+...-.+...|.-+|.|-+ .. -+-+.|.++|+.........+..-.... ...-.+.+... ..+..|.|.
T Consensus 1 ~~~nlsC~~~~~~~m~CtW~~g~--~~-~~~t~y~L~~~~~~~~~~~eC~~y~~~~~~~~gC~~~~~~~~~~~~~~~~v~ 77 (99)
T PF09240_consen 1 KPQNLSCFIYNLEYMNCTWEPGK--EA-PPDTQYTLYYWYSPLEEEKECPHYSKDSGTRIGCQFPVSEIDSSEFSQYNVC 77 (99)
T ss_dssp S-EEEEEEEETTTEEEEEEECCT--TC-STTEEEEEEEEETTSSSEEEESEEEESTSSEEEEEEESCTT-TTTTSEEEEE
T ss_pred CCeeCEEEEECCEEEEEEECCCC--CC-CCcccEEEEEEcCCCCccccCCCccccCCceeEEEecCCCccccccceEEEE
Confidence 36788888788899999999721 11 1346899999987644333332222222 22233444444 345799999
Q ss_pred EEEecCCCCCC
Q psy12060 964 VQAINDVGPGP 974 (978)
Q Consensus 964 V~A~n~~G~gp 974 (978)
|.+.+.+|.-+
T Consensus 78 V~~ss~~~~i~ 88 (99)
T PF09240_consen 78 VNGSSSAGSIR 88 (99)
T ss_dssp EEEEETTEEEE
T ss_pred EEeccCCCccC
Confidence 99999988643
No 455
>KOG4228|consensus
Probab=89.21 E-value=0.89 Score=53.71 Aligned_cols=137 Identities=20% Similarity=0.157 Sum_probs=98.5
Q ss_pred EEEEEEEcCCCceeeeEEEEEcCCCCCCCceEEEEeeCCeeEEEeecCCCCCCCceeEEEEEeeccccCceEecccccce
Q psy12060 754 EYECVVKSTVGKISTKTTVIVEGPPGLPGGVQVVEVHKTSATIQWTDGATNGRPITHYKIIARTNWNSTWFNVSEHVIGK 833 (978)
Q Consensus 754 ~Y~c~a~n~~G~~s~~~~l~v~~~P~~P~~~~~~~~~~~~v~l~W~~p~~~~~~i~~Y~v~~~~~~~~~w~~~~~~~~~~ 833 (978)
.|+|.+....|.....+.+.|.+-|..|....+.....+.+...|..+.. .-..|.+.++...+. ..-. ..
T Consensus 1 ~Y~~~~~~~~~~~~~~~~v~v~~~p~~~~~~~vt~~~~~~~~~~~~~~~t---~~~~y~v~~~~~~s~-~~~~----~~- 71 (1087)
T KOG4228|consen 1 NYTCLARSGLGPGELITYVRVNGGPPGPSTPNVTGSTATSWVQAELLGST---WPNYYQVIFKALSSG-YGYI----DV- 71 (1087)
T ss_pred CeeeeecccCCCccceEEEEecCCCCCCCCcccccccccceeehhhccCC---ChhhhheeeeEeccC-ccee----ec-
Confidence 49999999999999999999987666666777777888899999987654 345577766654433 1111 00
Q ss_pred eeeecCCceeeEEeeccCCCceeEEEEEEecCCccCCCCCCCCCCCCCCCCCCCCCCceeecccccCcEEEEEEe
Q psy12060 834 EVDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPSPQYNTPADKPYQAPSRIGGGGGKIGDLSISWEP 908 (978)
Q Consensus 834 ~~~~~~~~~~~~~~~~L~p~~~Y~~~v~A~N~~G~g~~s~~~~~~~t~~~~P~~~P~~~~~~~~~~~si~v~W~~ 908 (978)
.....+.... +.+...|.+ .+.|..|.+.++.+. .-++.+..+...+....+.........+.|..
T Consensus 72 -----~~~~~~s~~~-~~~~~~~~~--~evnt~~~a~~~~~~-~~rt~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 137 (1087)
T KOG4228|consen 72 -----DLTTRLSYPC-LSPPSFLEL--VEVNTIGRAPFQCPV-APRTGEQATLSLQRDVQALMLSAATAHVNWRR 137 (1087)
T ss_pred -----cceeecccCC-CCCcchhhh--hhccccccccccccc-CCccccccccccccchhhhhhhhhhhccCccc
Confidence 1122244455 777777887 899999999999887 45666777777888877777777778888877
No 456
>PF02010 REJ: REJ domain; InterPro: IPR002859 The REJ (Receptor for Egg Jelly) domain is found in PKD1 P98161 from SWISSPROT and the sperm receptor for egg jelly Q26627 from SWISSPROT. The exact function of this domain is unknown. The domain is 600 amino acids long so is probably composed of multiple structural domains. There are six completely conserved cysteine residues that may form disulphide bridges. This region contains tandem PKD-like domains. Sequence similarity between a region of the autosomal dominant polycystic kidney disease (ADPKD) protein, polycystin-1 and a sea urchin sperm glycoprotein involved in fertilization, the receptor for egg jelly (suREJ) has been known for some time. The suREJ protein binds the glycoprotein coat of the egg (egg jelly), triggering the acrosome reaction, which transforms the sperm into a fusogenic cell. The sequence similarity and expression pattern suggests that the predicted human PKDREJ protein is a mammalian equivalent of the suREJ protein and therefore may have a central role in human fertilization [].; PDB: 2E7M_A 2YRL_A.
Probab=89.16 E-value=0.33 Score=54.47 Aligned_cols=310 Identities=17% Similarity=0.184 Sum_probs=21.6
Q ss_pred ceeEEEEeecCCCCeeEEeECCEECCCCCCCCCCCCcEEEecCEEEEEeCCCCCCCeE--EEEEEE-cCCCce--eeEEE
Q psy12060 505 DLTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQDNVLTIRYLNPERDPAM--YQCRAK-NQLKTR--YSSAQ 579 (978)
Q Consensus 505 ~~~l~C~~~~~p~~~i~W~~~g~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~d~G~--Y~C~a~-n~~g~~--~~~~~ 579 (978)
.+.|.|.. .-...+.|.....+....... ... ......|.|..... ..|. |...+. ...... .....
T Consensus 2 ~~~~~C~~--~~~~~y~W~~~~~~~~~~~~~--~~~--~~~~~~l~ip~~~L--~~G~y~~~~~Vt~~~~~~~~~~~~~~ 73 (440)
T PF02010_consen 2 HVSLNCND--ASTVTYNWTVFSGPSNSIVQD--MDN--SSNTPQLTIPPYTL--PPGDYTFTLTVTASSNPGLSSTDSVT 73 (440)
T ss_dssp ----------------BEEEEES-TT-EEES--TTT----SSSECEEECES----SCEEEEEEEEE--BCTTEEEEEEEE
T ss_pred Cccccccc--ccceEEEEEEEecCCcCcccc--ccc--cCCceEEEeCcccC--CCCCEEEEEEEEEECCCCceEEEEEE
Confidence 36778943 246788997632211100000 000 12234677776543 3454 556666 222222 33445
Q ss_pred EEEEEcCCccccCCCCcceeecCCCeEEEEEeeccCC-------CCeeEEeeCCEEec------C-CCcEEEeecCcEEE
Q psy12060 580 LRVLTLKPSFKKRPLESETYAGEGGNVTIFCNPEAAP-------KPKFVWKKDGNIIG------S-GGRRKIFENGNLLI 645 (978)
Q Consensus 580 l~v~~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~p-------~~~i~W~~~g~~~~------~-~~~~~~~~~~~l~i 645 (978)
+.|...+....+. ......+..++.+.|.....-+| ..++.|.-....-. . ...........|.|
T Consensus 74 v~V~~s~l~~~I~-gG~~~~~~~~~~i~ldgs~S~Dpd~~~~~~~l~y~W~C~~~~~~~~C~~~~~~~~~~~~~~~~l~i 152 (440)
T PF02010_consen 74 VTVEPSPLVAVIK-GGSSRTVGYNSDITLDGSQSYDPDGPPGDSGLTYSWSCTDLSSNSACSTPSTNITLLNSSSSSLTI 152 (440)
T ss_dssp EEEE----------------------------------------------------------------------------
T ss_pred EEEeeccceeEEc-CCccceeecCceEEEeeEEEecccccccCCceEEEEEEeCCceeccccccccccccCCCCCEEEEE
Confidence 5555322222221 11222233445677776543344 13677874322111 0 00011122334666
Q ss_pred ccc--cCCCCEEEEEEEEeCCc-eeeeeEEEEEEe--CCceeeeCCC--ceEEEccccEEEEEEeeecC--CcCeEEEEe
Q psy12060 646 SPV--SRDDSGIYSCTATNVHG-MDESKGRLIVLH--GPSYYEQLPP--KITIAAHRNLQLRCSAHTEE--LLDVAYIWT 716 (978)
Q Consensus 646 ~~~--~~~d~G~Y~C~a~n~~g-~~~~~~~l~v~~--~p~~~~~~~~--~~~~~~g~~~~l~C~~~~~p--~~~~~~~W~ 716 (978)
..- .......++..+....+ .......+.+.. +|.+...... ...+..++.+.|...+...+ ...+.+.|.
T Consensus 153 ~~~~l~~~~~y~f~ltv~k~~r~s~s~~~~v~v~~~~~p~v~I~~~~n~~~~vn~~~~l~L~~~~~~~~~~~~~~~y~Ws 232 (440)
T PF02010_consen 153 PASTLSPGSTYTFTLTVSKGSRSSSSASQTVTVVSGDPPTVSISCVSNCKGKVNPSERLVLQASCSSCDSDSSNVSYSWS 232 (440)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred EhHHcCCCceEEEEEEEEeCCCCceeeEEEEEeccCCCCceeEccccccccccCCCCCEEEEEEEeCCCCcCCCEEEEEE
Confidence 433 33322333444444333 223333444433 2222111111 12366677777766665433 345677887
Q ss_pred eC---CEEccccccccc-cCCeeecCCceEEEeccCCCCCEEEEEE--EEcCCCce-eeeEEEEEcCCCCCCCceEEEE-
Q psy12060 717 HN---GVRIGNMDLNEL-ETPNINIDGGLLEITNASFADAGEYECV--VKSTVGKI-STKTTVIVEGPPGLPGGVQVVE- 788 (978)
Q Consensus 717 ~~---g~~~~~~~~~~~-~~~~~~~~~~~l~i~~~~~~d~g~Y~c~--a~n~~G~~-s~~~~l~v~~~P~~P~~~~~~~- 788 (978)
.. +.......+... ...........|.|..-.++....|.++ |.+..+.. .+++.+.+..||... .+.+..
T Consensus 233 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~Lvi~~~~l~~g~~Y~~~l~v~~~~~~~~~a~~~~~~n~pP~~g-~c~v~P~ 311 (440)
T PF02010_consen 233 LFSLDGVSDSNSELPDWSSMTTTGSSSSNLVIDPGVLEPGSTYTFRLTVTDSSGSSGSASISFTVNAPPSGG-SCSVSPS 311 (440)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred Eeeccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccc
Confidence 60 000000000000 0011122345677776556666667654 45554443 566777776666532 333332
Q ss_pred ---eeCCeeEEEeecCCCCCCCceeEEEEE-eeccccCceE
Q psy12060 789 ---VHKTSATIQWTDGATNGRPITHYKIIA-RTNWNSTWFN 825 (978)
Q Consensus 789 ---~~~~~v~l~W~~p~~~~~~i~~Y~v~~-~~~~~~~w~~ 825 (978)
...+.++++.....+.+.| +.|.+.+ .......|..
T Consensus 312 ~G~al~T~Ft~~c~~~~d~~~p-L~Y~f~~~~~~~~~~~~~ 351 (440)
T PF02010_consen 312 SGYALETTFTITCSGWTDDDQP-LTYQFYYSSDDGSGSWNL 351 (440)
T ss_dssp -----------------------------------------
T ss_pred cccccccccccccccccccccc-cccccccccccccccccc
Confidence 2235566666544444444 5688888 3333344443
No 457
>PF05790 C2-set: Immunoglobulin C2-set domain; InterPro: IPR008424 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents C2-set domains, which are Ig-like domains resembling the antibody constant domain. C2-set domains are found primarily in the mammalian T-cell surface antigens CD2 (Cluster of Differentiation 2), CD4 and CD80, as well as in vascular (VCAM) and intercellular (ICAM) cell adhesion molecules. CD2 mediates T-cell adhesion via its ectodomain, and signal transduction utilising its 117-amino acid cytoplasmic tail []. CD2 displays structural and functional similarities with African swine fever virus (ASFV) LMW8-DR, a protein that is involved in cell-cell adhesion and immune response modulation, suggesting a possible role in the pathogenesis of ASFV infection []. CD4 is the primary receptor for HIV-1. CD4 has four immunoglobulin-like domains in its extracellular region that share the same structure, but can differ in sequence. Certain extracellular domains may be involved in dimerisation [].; GO: 0007155 cell adhesion, 0016021 integral to membrane; PDB: 1CID_A 1CDU_A 1WIQ_B 2NY4_B 2NY2_B 1WIP_B 1WIO_A 3S4S_G 1CDY_A 3S5L_G ....
Probab=87.92 E-value=7.3 Score=30.92 Aligned_cols=25 Identities=32% Similarity=0.460 Sum_probs=17.9
Q ss_pred cceEEEeCCCCCCCCeEEEEEEE-eCc
Q psy12060 255 GGNLIINDPRQVEDRGSYHCKAS-NKF 280 (978)
Q Consensus 255 ~~~l~i~~~~~~~d~G~Y~C~a~-n~~ 280 (978)
...+..... ...|+|...|.|+ +..
T Consensus 42 ~~~~~~~~~-~~~d~G~w~C~a~~~~~ 67 (80)
T PF05790_consen 42 KKLVSTFTP-TTEDSGTWVCTASDNEP 67 (80)
T ss_dssp SSEEEEESB-TCGGSEEEEEEEEECTT
T ss_pred ceEEEEecC-CCCCCEEEEEEEcCCce
Confidence 334555665 7899999999994 443
No 458
>cd03520 Link_domain_CSPGs_modules_2_4 Link_domain_CSPGs_modules_2_4; this link domain is found in the second and fourth link modules of the chondroitin sulfate proteoglycan core protein (CSPG) aggrecan and, in the second link module of three other CSPGs: versican, neurocan, and brevican. The link domain is a hyaluronan (HA)-binding domain. CSPGs are characterized by an N-terminal globular domain (G1 domain) containing two contiguous link modules (modules 1 and 2). Both link modules of the G1 domain of aggrecan are involved in interaction with HA. Aggrecan in addition contains a second globular domain (G2) having link modules 3 and 4 which lack HA-binding activity. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Aggregates having other CSPGs substituting for aggregan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA and
Probab=87.32 E-value=0.49 Score=38.29 Aligned_cols=22 Identities=32% Similarity=0.427 Sum_probs=20.5
Q ss_pred CCCHHHHHHHhhhcCCeeeeeC
Q psy12060 48 LKTRNDAKLNCKSLDSDLANVN 69 (978)
Q Consensus 48 ~~~~~~A~~~C~~~~~~L~~i~ 69 (978)
+.||.||++.|+.+|+.||+..
T Consensus 10 ~l~f~eA~~aC~~~ga~lAs~~ 31 (96)
T cd03520 10 KFTFQEARAECRSLGAVLATTG 31 (96)
T ss_pred CcCHHHHHHHHHHcCCEeCCHH
Confidence 6899999999999999999983
No 459
>PHA02914 Immunoglobulin-like domain protein; Provisional
Probab=87.26 E-value=41 Score=35.19 Aligned_cols=114 Identities=18% Similarity=0.280 Sum_probs=70.9
Q ss_pred CCCCCcEEEEEEEe--ecCC-CeeEEEEcCccCCC------------------Cce---------eeecccEEEeCCCCC
Q psy12060 411 PKAGDKVRLECVAF--GYPV-PSYNWTRRGSPLPR------------------NAY---------FENFNRILTIPNVKV 460 (978)
Q Consensus 411 v~~G~~~~l~C~~~--g~p~-~~v~W~~~~~~l~~------------------~~~---------~~~~~~~L~i~~~~~ 460 (978)
+..|..+.|.|..+ |+.. ..++|+--+-++.. ... .....++|+|.++..
T Consensus 276 ~~~g~~v~~~c~~s~~~~e~i~~~~w~~t~~~~~~~~g~~~~~~~v~~~~~~~~~~~i~~~~~~s~dlk~STLTIkka~I 355 (500)
T PHA02914 276 LEVGKRVDIECFFSMCGNENISNAKWIDTGFEIGPLIGTVKSKDIVEGDFAEDDDFMISAHANYSDDLKNSTLTIKKAHI 355 (500)
T ss_pred eccCcEEEEEEEEeecCCcccccceEEecCCcccceeEEEEecceeecccccCCceEEEEecccccchhhceEEeeeEEE
Confidence 45699999999886 4433 36899876655421 000 112356899999999
Q ss_pred CCCeEEEEEEEeCCCceEEEEEEEEEeeceeeccCCcccccCCCc-eeEEEEeecC--CCCeeEEeECCEECC
Q psy12060 461 EDQGEYICRASNDRSALESSVTISIQAEPNFTIPLTDKHMDNQAD-LTWTCEAFGV--PDVTYSWFRNGELLN 530 (978)
Q Consensus 461 ~d~G~Y~C~a~n~~g~~~~~~~l~V~~~p~~~~~~~~~~~~~g~~-~~l~C~~~~~--p~~~i~W~~~g~~~~ 530 (978)
..+|-|+|+|....-.....--|.|...-.+. ...+|+. -.+.|-+-.. .++.+.|.-+|....
T Consensus 356 ~N~GCY~~~a~~g~~~~ec~~Cl~V~d~V~f~------W~~e~~n~T~V~Cyv~sy~~kp~si~wkvnGV~~~ 422 (500)
T PHA02914 356 NNAGCYEAQAFMGKFKEECRHCFKVADHVFFK------WNTEGDNETKVACYAAQYDMQPFSILWKSNGVSFG 422 (500)
T ss_pred EcCCceEEEEecCcchhhhhhheEeccEEEEE------EEeccCceEEEEEEEEecccCCceeEEEEccEEec
Confidence 99999999998754333333333333221111 1223333 4577887544 367799999887654
No 460
>PF11465 Receptor_2B4: Natural killer cell receptor 2B4; InterPro: IPR024303 2B4 is a transmembrane receptor which is expressed primarily on natural killer (NK) cells. It plays a role in activating NK-mediated cytotoxicity through its interaction with CD48 on target cells in a subset of CD8 T cells []. The structure of 2B4 consists of an immunoglobulin variable domain fold and contains two beta-sheets. One of the beta-sheets, the six-stranded sheet, contains structural features that may have a role in ligand recognition and receptor function []. This entry represents the 2B4 immunoglobulin domain.; GO: 0005488 binding; PDB: 2PTU_D 2PTT_B 1Z2K_A.
Probab=86.66 E-value=1.8 Score=35.78 Aligned_cols=39 Identities=23% Similarity=0.387 Sum_probs=30.0
Q ss_pred eecceEEEeCCCCCCCCeEEEEEEEeCceeEEeEEEEEEE
Q psy12060 253 LSGGNLIINDPRQVEDRGSYHCKASNKFGSIISESVQLAF 292 (978)
Q Consensus 253 ~~~~~l~i~~~~~~~d~G~Y~C~a~n~~g~~~s~~~~l~v 292 (978)
..+-+|.|..+ +..|+|.|.-++++..|.......+|.|
T Consensus 68 ~enlaLlIkaA-q~qDSG~Y~LEvT~~sG~V~~~~FqVsV 106 (108)
T PF11465_consen 68 SENLALLIKAA-QPQDSGLYCLEVTNESGKVCTKNFQVSV 106 (108)
T ss_dssp TTTTEEEESS--SGGG-EEEEEEEEETTSCEEEEEEEEEE
T ss_pred ccCceEEEeec-CcccCceEEEEEEcCCCcEEEEEEEEEe
Confidence 34668999887 9999999999999999998665555544
No 461
>COG3401 Fibronectin type 3 domain-containing protein [General function prediction only]
Probab=86.30 E-value=5.8 Score=40.39 Aligned_cols=163 Identities=12% Similarity=0.072 Sum_probs=89.8
Q ss_pred eCCeeEEEeecCCCCCCCceeEEEEEeeccccCceEecccccceeeeecCCceeeEEeeccCCCceeEEEEEEecCCccC
Q psy12060 790 HKTSATIQWTDGATNGRPITHYKIIARTNWNSTWFNVSEHVIGKEVDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYG 869 (978)
Q Consensus 790 ~~~~v~l~W~~p~~~~~~i~~Y~v~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~L~p~~~Y~~~v~A~N~~G~g 869 (978)
.+..+.+-|.+-.+- +.-+|.|+.... .....+.+-- +++. ...+.-.+ |.++..|.++|.|.+..+.-
T Consensus 82 ~~~~~~~~w~~~~d~--~~~~Y~i~~~~g-D~~f~r~~~~-----~n~l--~~~~i~s~-~~~~~~~~~~Iia~~f~~~~ 150 (343)
T COG3401 82 RPKSVKVFWSPHPDV--SVGKYIIQRQNG-DGKFLRTGLV-----KNRL--FVEFIDSD-LGHNEKYMELIIAADFQMGK 150 (343)
T ss_pred CcceeeecccccCCC--CCCeEEEEEecC-chhhhhhhHH-----Hhcc--chhheecc-cccccceeeeEEeecccccc
Confidence 344589999984332 346798876542 2222211110 0111 11122334 99999999999999988876
Q ss_pred CCCCCCCCCCC-CCCCCCCCCCceeecccccCcEEEEEEeCCCCCCCCCcceEEEEEEecCCccceeeeeeeccceeEEE
Q psy12060 870 EPSSPSPQYNT-PADKPYQAPSRIGGGGGKIGDLSISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETLKEYGNVGIAV 948 (978)
Q Consensus 870 ~~s~~~~~~~t-~~~~P~~~P~~~~~~~~~~~si~v~W~~p~~~~~~g~i~~Y~i~~~~~~~~~~~~~~~~~~~~~~~~~ 948 (978)
+.|... +.. +...| ..-.++++.....+.+.|+|+.++. .+ .|+|+-...+..+........ .+.+.
T Consensus 151 sfsf~g--VE~~~~~~P-~ei~~~~~~~d~~~~i~ls~dg~~~--~~----yy~IY~~~~g~e~~~~ia~t~---~n~y~ 218 (343)
T COG3401 151 SFSFTG--VEATPKAEP-KEITNVRVSFDLGNNIELSEDGSEA--ED----YYRIYASDSGNEEYGFIAQTT---ENSYY 218 (343)
T ss_pred eeeeee--eecccccCC-ceeeeeeeecCCCCcceeeccCccc--cc----eEEEeccCCccccccceeecc---ccchh
Confidence 665332 222 22222 2334667777888999999998432 22 788876665544433322111 11122
Q ss_pred EEcCCCCceeeEEEEEEEec-CCCCCCCCC
Q psy12060 949 VRIPSEFYYTEYEVKVQAIN-DVGPGPESE 977 (978)
Q Consensus 949 ~~l~~L~p~t~Y~~~V~A~n-~~G~gp~S~ 977 (978)
....+| |..|...|.++. ..++++.+.
T Consensus 219 d~~egl--ga~~~y~VTtVd~~~~es~lp~ 246 (343)
T COG3401 219 DVKEGL--GAVEYYKVTTVDNTGFESDLPN 246 (343)
T ss_pred hhhhcc--CceeEEEEEEEcCCcceeccCC
Confidence 234455 455555565555 666677664
No 462
>PF05790 C2-set: Immunoglobulin C2-set domain; InterPro: IPR008424 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents C2-set domains, which are Ig-like domains resembling the antibody constant domain. C2-set domains are found primarily in the mammalian T-cell surface antigens CD2 (Cluster of Differentiation 2), CD4 and CD80, as well as in vascular (VCAM) and intercellular (ICAM) cell adhesion molecules. CD2 mediates T-cell adhesion via its ectodomain, and signal transduction utilising its 117-amino acid cytoplasmic tail []. CD2 displays structural and functional similarities with African swine fever virus (ASFV) LMW8-DR, a protein that is involved in cell-cell adhesion and immune response modulation, suggesting a possible role in the pathogenesis of ASFV infection []. CD4 is the primary receptor for HIV-1. CD4 has four immunoglobulin-like domains in its extracellular region that share the same structure, but can differ in sequence. Certain extracellular domains may be involved in dimerisation [].; GO: 0007155 cell adhesion, 0016021 integral to membrane; PDB: 1CID_A 1CDU_A 1WIQ_B 2NY4_B 2NY2_B 1WIP_B 1WIO_A 3S4S_G 1CDY_A 3S5L_G ....
Probab=86.05 E-value=7.9 Score=30.72 Aligned_cols=51 Identities=24% Similarity=0.413 Sum_probs=31.8
Q ss_pred CeeEEEEcCccCCCCceeeecccEEEeCCCCCCCCeEEEEEE-EeCCCceEEEEEEEE
Q psy12060 429 PSYNWTRRGSPLPRNAYFENFNRILTIPNVKVEDQGEYICRA-SNDRSALESSVTISI 485 (978)
Q Consensus 429 ~~v~W~~~~~~l~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a-~n~~g~~~~~~~l~V 485 (978)
+.+.|+-.+... ......+........|+|.+.|.| .+..-.....+.|.|
T Consensus 27 ~~~~l~~~~~k~------~~~~~~~~~~~~~~~d~G~w~C~a~~~~~k~~~s~~~i~v 78 (80)
T PF05790_consen 27 PSLFLENPGKKS------LETKKLVSTFTPTTEDSGTWVCTASDNEPKERESKIEILV 78 (80)
T ss_dssp EEEEEECSSCEE------EEESSEEEEESBTCGGSEEEEEEEEECTTEEEEEEEEEEE
T ss_pred hhheeeccCccc------cccceEEEEecCCCCCCEEEEEEEcCCceEEEEEEEEEEc
Confidence 356666544332 223445667777889999999999 555444455555554
No 463
>PF11465 Receptor_2B4: Natural killer cell receptor 2B4; InterPro: IPR024303 2B4 is a transmembrane receptor which is expressed primarily on natural killer (NK) cells. It plays a role in activating NK-mediated cytotoxicity through its interaction with CD48 on target cells in a subset of CD8 T cells []. The structure of 2B4 consists of an immunoglobulin variable domain fold and contains two beta-sheets. One of the beta-sheets, the six-stranded sheet, contains structural features that may have a role in ligand recognition and receptor function []. This entry represents the 2B4 immunoglobulin domain.; GO: 0005488 binding; PDB: 2PTU_D 2PTT_B 1Z2K_A.
Probab=86.02 E-value=5 Score=33.25 Aligned_cols=76 Identities=20% Similarity=0.177 Sum_probs=45.7
Q ss_pred EEEEEEeeecCCcC--eEEEEeeCCEEccccccccccCCeeecCCceEEEeccCCCCCEEEEEEEEcCCCcee-eeEEEE
Q psy12060 697 LQLRCSAHTEELLD--VAYIWTHNGVRIGNMDLNELETPNINIDGGLLEITNASFADAGEYECVVKSTVGKIS-TKTTVI 773 (978)
Q Consensus 697 ~~l~C~~~~~p~~~--~~~~W~~~g~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~c~a~n~~G~~s-~~~~l~ 773 (978)
..+.|...-...+. ..++|..+...... .....+..+..++-.|.|..++..|+|.|..+++|..|... ..+.+.
T Consensus 28 ~sv~WK~~l~s~~~~~~IltW~n~~~~~~~--~~~n~r~~F~~enlaLlIkaAq~qDSG~Y~LEvT~~sG~V~~~~FqVs 105 (108)
T PF11465_consen 28 YSVQWKMQLPSQKKFEVILTWKNDSTPSYN--SSFNNRFNFTSENLALLIKAAQPQDSGLYCLEVTNESGKVCTKNFQVS 105 (108)
T ss_dssp EEEEEEEEETSSSEEE-EEEEETTEEEESS--TTHHHHEEEETTTTEEEESS-SGGG-EEEEEEEEETTSCEEEEEEEEE
T ss_pred EEEEEEEEcccCCceEEEEEEcCCCccccc--ccccceEeeeccCceEEEeecCcccCceEEEEEEcCCCcEEEEEEEEE
Confidence 45667665533232 33667544443322 11122344556678999999999999999999999999863 334444
Q ss_pred E
Q psy12060 774 V 774 (978)
Q Consensus 774 v 774 (978)
|
T Consensus 106 V 106 (108)
T PF11465_consen 106 V 106 (108)
T ss_dssp E
T ss_pred e
Confidence 3
No 464
>PHA02865 MHC-like TNF binding protein; Provisional
Probab=85.70 E-value=1.9 Score=44.40 Aligned_cols=21 Identities=14% Similarity=0.180 Sum_probs=17.2
Q ss_pred cEEEEEEEeecCCC--eeEEEEc
Q psy12060 416 KVRLECVAFGYPVP--SYNWTRR 436 (978)
Q Consensus 416 ~~~l~C~~~g~p~~--~v~W~~~ 436 (978)
.++|.|.|.|+-+. .++|.|+
T Consensus 216 ~~tL~C~A~GFYP~~I~v~W~kd 238 (338)
T PHA02865 216 NTTLFCTFDSHYPSSVAAKWYNS 238 (338)
T ss_pred CceEEEEEEeEeCCccEEEEEec
Confidence 68999999994433 7899999
No 465
>PF06832 BiPBP_C: Penicillin-Binding Protein C-terminus Family; InterPro: IPR009647 This conserved region of approximately 90 residues is found in a sub-group of bacterial Penicillin-Binding Proteins (PBPs). A variable length loop region separates this region from the transpeptidase unit (IPR001460 from INTERPRO). It is predicted to be a beta fold.
Probab=84.97 E-value=11 Score=30.77 Aligned_cols=54 Identities=19% Similarity=0.178 Sum_probs=33.9
Q ss_pred EEEEEEeecCCCCeEEEEEcccccccccccccCCCCCCceEeecceEEEeCCCCCCCCeEEEEEEEeCceeEE
Q psy12060 212 ITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVEDRGSYHCKASNKFGSII 284 (978)
Q Consensus 212 ~~l~C~~~g~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~d~G~Y~C~a~n~~g~~~ 284 (978)
..|.+.+.|. ...+.||.||..+... .....+.+ .....|.|+-.+....|...
T Consensus 32 ~~l~l~a~~~-~~~~~W~vdg~~~g~~--------------~~~~~~~~----~~~~~G~h~l~vvD~~G~~~ 85 (89)
T PF06832_consen 32 QPLVLKAAGG-RGPVYWFVDGEPLGTT--------------QPGHQLFW----QPDRPGEHTLTVVDAQGRSA 85 (89)
T ss_pred ceEEEEEeCC-CCcEEEEECCEEcccC--------------CCCCeEEe----CCCCCeeEEEEEEcCCCCEE
Confidence 4455555444 3499999999765211 01122333 44688999999998888754
No 466
>cd01102 Link_Domain The link domain is a hyaluronan (HA)-binding domain. It functions to mediate adhesive interactions during inflammatory leukocyte homing and tumor metastasis. It is found in the CD44 receptor and in human TSG-6. TSG-6 is the protein product of the tumor necrosis factor-stimulated gene-6. TSG-6 has a strong anti-inflammatory effect in models of acute inflammation and autoimmune arthritis and plays an essential role in female fertility. This group also contains the link domains of the chondroitin sulfate proteoglycan core proteins (CSPG) including aggrecan, versican, neurocan, and brevican and the link domains of the vertebrate HAPLN (HA and proteoglycan binding link) protein family. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Aggregates in which other CSPGs substitute for aggregan might contribute to the structural integrity of many different tissues. Members of
Probab=82.88 E-value=0.81 Score=36.96 Aligned_cols=23 Identities=30% Similarity=0.361 Sum_probs=20.8
Q ss_pred CCCHHHHHHHhhhcCCeeeeeCC
Q psy12060 48 LKTRNDAKLNCKSLDSDLANVND 70 (978)
Q Consensus 48 ~~~~~~A~~~C~~~~~~L~~i~~ 70 (978)
+.|+.||++.|+.+|+.||+...
T Consensus 13 ~l~f~eA~~aC~~~ga~lAs~~Q 35 (92)
T cd01102 13 KLTFAEAALACKARGAHLATPGQ 35 (92)
T ss_pred ccCHHHHHHHHHHcCCEeCCHHH
Confidence 58999999999999999999843
No 467
>PHA03283 envelope glycoprotein E; Provisional
Probab=82.86 E-value=22 Score=38.83 Aligned_cols=83 Identities=17% Similarity=0.110 Sum_probs=49.5
Q ss_pred CcEEEeeeeeecceeeEEEEEeecccccccCCceeEEEccCCCccccccCCCCC---CCC----------CCCCCCCCcE
Q psy12060 351 GALYFSALEQIDAGNYSCNVQSKVSDTGRNGPFFPLKVFPHSNFQQLKFPNNFP---KTF----------PEAPKAGDKV 417 (978)
Q Consensus 351 ~~L~i~~~~~~d~G~Y~C~~~n~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~---~~~----------~~~v~~G~~~ 417 (978)
+.|.|.+++.+++|.|+-...+..+ .....+.|.|..++.......+...+ ... .....+|+++
T Consensus 134 ~~l~I~~at~~~aGVYtly~r~d~~---~~~~vflvtVk~~~~~~~~~Pp~~~pv~P~~h~a~f~v~nYhS~vf~~GDtf 210 (542)
T PHA03283 134 SVLQIQRATPNIAGVYTLHVSSDGM---MKHSVFFVTVKKPPKQPQTPPAPLVPQVPARHHTDFHVRGYHSRVYSPGDSF 210 (542)
T ss_pred CeeEEEecccccCeEEEEEecCCCc---eEEEEEEEEecCCCcCCCCCCCCccccCCccCCceEEEecceeEEecCCCce
Confidence 5699999999999999999887543 22334677887643322221111110 100 0123689999
Q ss_pred EEEEEEeec--CC---CeeEEEEc
Q psy12060 418 RLECVAFGY--PV---PSYNWTRR 436 (978)
Q Consensus 418 ~l~C~~~g~--p~---~~v~W~~~ 436 (978)
.|.-..... .. ..|.|++-
T Consensus 211 ~lsi~l~s~~~d~~fs~~i~Wyy~ 234 (542)
T PHA03283 211 DLSVHLESDIGDPSFSATIDWYYM 234 (542)
T ss_pred eEeEEEeeccCCCCceEEEEEEEe
Confidence 887665432 12 27999873
No 468
>KOG4152|consensus
Probab=82.50 E-value=6.5 Score=42.04 Aligned_cols=123 Identities=17% Similarity=0.247 Sum_probs=66.6
Q ss_pred cCCCCCEEEEEEEEcCCCcee----eeEEEEEcCCCCCCCceEEEEeeCCeeEEEeecCCCCC-CCceeEEEEEeec---
Q psy12060 747 ASFADAGEYECVVKSTVGKIS----TKTTVIVEGPPGLPGGVQVVEVHKTSATIQWTDGATNG-RPITHYKIIARTN--- 818 (978)
Q Consensus 747 ~~~~d~g~Y~c~a~n~~G~~s----~~~~l~v~~~P~~P~~~~~~~~~~~~v~l~W~~p~~~~-~~i~~Y~v~~~~~--- 818 (978)
+-...+.+|+..+.|..|..- .....-+.+.|.+|..+++. .+-..+.+.|+||...| +.|+.|..+..-.
T Consensus 654 lv~Gq~yrfrV~aIng~G~gp~s~i~~~kTc~pG~P~apS~~ri~-k~~eGi~l~weppt~p~sg~Iieys~ylAi~tq~ 732 (830)
T KOG4152|consen 654 LVTGQAYRFRVTAINGKGPGPASTILKLKTCAPGKPTAPSGARIK-KTIEGISLVWEPPTKPGSGTIIEYSPYLAIITQA 732 (830)
T ss_pred cccccceeeeeeeeeccCCCchhhheeeeeccCCCCCCccccccc-ccccceeecccCCCCCCCcceEEeehhhHhhhhh
Confidence 334566778888888877433 23333455677778777663 33457899999988654 5777777653211
Q ss_pred ---cc--cCceEecccccceeeeecCCceeeEEeeccCCCceeEEEEEEecCCccCCCC
Q psy12060 819 ---WN--STWFNVSEHVIGKEVDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPS 872 (978)
Q Consensus 819 ---~~--~~w~~~~~~~~~~~~~~~~~~~~~~~~~~L~p~~~Y~~~v~A~N~~G~g~~s 872 (978)
+. ....+.-..+....+... +.--.-+.+ ....-.-.|||.|.|+-|.|+..
T Consensus 733 ~~~~~sql~fmr~ycg~~t~c~vt~-g~l~tA~~d-~t~~paivfri~aknekGyGpat 789 (830)
T KOG4152|consen 733 GATGVSQLPFMRSYCGIITTCVVTS-GKLITAVPD-ITTGPAIVFRIVAKNEKGYGPAT 789 (830)
T ss_pred hccCccccceeeeecccceeeEEec-ccceeeccc-cccCcceEEEEEecCCCCCCcce
Confidence 00 111111111110000000 000001112 33345678999999999998754
No 469
>smart00445 LINK Link (Hyaluronan-binding).
Probab=82.25 E-value=0.89 Score=36.85 Aligned_cols=23 Identities=26% Similarity=0.378 Sum_probs=20.8
Q ss_pred CCCHHHHHHHhhhcCCeeeeeCC
Q psy12060 48 LKTRNDAKLNCKSLDSDLANVND 70 (978)
Q Consensus 48 ~~~~~~A~~~C~~~~~~L~~i~~ 70 (978)
+.||.||++.|+.+|+.||+...
T Consensus 14 ~l~f~eA~~aC~~~ga~lAs~~Q 36 (94)
T smart00445 14 KLTFAEAREACRAQGATLATVGQ 36 (94)
T ss_pred ccCHHHHHHHHHHcCCEeCCHHH
Confidence 58999999999999999999843
No 470
>PF02010 REJ: REJ domain; InterPro: IPR002859 The REJ (Receptor for Egg Jelly) domain is found in PKD1 P98161 from SWISSPROT and the sperm receptor for egg jelly Q26627 from SWISSPROT. The exact function of this domain is unknown. The domain is 600 amino acids long so is probably composed of multiple structural domains. There are six completely conserved cysteine residues that may form disulphide bridges. This region contains tandem PKD-like domains. Sequence similarity between a region of the autosomal dominant polycystic kidney disease (ADPKD) protein, polycystin-1 and a sea urchin sperm glycoprotein involved in fertilization, the receptor for egg jelly (suREJ) has been known for some time. The suREJ protein binds the glycoprotein coat of the egg (egg jelly), triggering the acrosome reaction, which transforms the sperm into a fusogenic cell. The sequence similarity and expression pattern suggests that the predicted human PKDREJ protein is a mammalian equivalent of the suREJ protein and therefore may have a central role in human fertilization [].; PDB: 2E7M_A 2YRL_A.
Probab=82.14 E-value=2.2 Score=47.91 Aligned_cols=297 Identities=14% Similarity=0.218 Sum_probs=25.9
Q ss_pred EEEEEEeecCCCCeEEEEEcccccccccccccCCCCCCceEeecceEEEeCCCCCCCCe--EEEEEEE--eCceeEEeEE
Q psy12060 212 ITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVEDRG--SYHCKAS--NKFGSIISES 287 (978)
Q Consensus 212 ~~l~C~~~g~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~d~G--~Y~C~a~--n~~g~~~s~~ 287 (978)
+.|.|.... ...+.|..-..+.... .... .. ......|.|.+. .. -.| .|...++ +..+...+..
T Consensus 3 ~~~~C~~~~--~~~y~W~~~~~~~~~~---~~~~-~~---~~~~~~l~ip~~-~L-~~G~y~~~~~Vt~~~~~~~~~~~~ 71 (440)
T PF02010_consen 3 VSLNCNDAS--TVTYNWTVFSGPSNSI---VQDM-DN---SSNTPQLTIPPY-TL-PPGDYTFTLTVTASSNPGLSSTDS 71 (440)
T ss_dssp ---------------BEEEEES-TT-E---EEST-TT-----SSSECEEECE-S---SCEEEEEEEEE--BCTTEEEEEE
T ss_pred ccccccccc--ceEEEEEEEecCCcCc---cccc-cc---cCCceEEEeCcc-cC-CCCCEEEEEEEEEECCCCceEEEE
Confidence 678994332 3689998765332110 0000 00 123346788764 33 344 5566666 3333444556
Q ss_pred EEEEEeeecccccCCCCe--eeecccCeEEEeCCC---CCC---CCceEEEeccccccc-----ccccceEEEeeCCcEE
Q psy12060 288 VQLAFGFIGEFNLKRAPE--IGNQNWGKAMFCDPP---TNY---PGVNYYWARDYFPNF-----VEEDKRVFVSYDGALY 354 (978)
Q Consensus 288 ~~l~v~~~~~~~~~~~~~--~~~~~~~~~l~C~~~---~~~---p~~~i~W~~~~~~~~-----~~~~~~~~~~~~~~L~ 354 (978)
+.|+|...+......... ....+..+.|..... ... ....+.|.-...... ............+.|.
T Consensus 72 ~~v~V~~s~l~~~I~gG~~~~~~~~~~i~ldgs~S~Dpd~~~~~~~l~y~W~C~~~~~~~~C~~~~~~~~~~~~~~~~l~ 151 (440)
T PF02010_consen 72 VTVTVEPSPLVAVIKGGSSRTVGYNSDITLDGSQSYDPDGPPGDSGLTYSWSCTDLSSNSACSTPSTNITLLNSSSSSLT 151 (440)
T ss_dssp EEEEEE--------------------------------------------------------------------------
T ss_pred EEEEEeeccceeEEcCCccceeecCceEEEeeEEEecccccccCCceEEEEEEeCCceeccccccccccccCCCCCEEEE
Confidence 666665443322221111 112223345544221 111 235788876532211 0000011112234566
Q ss_pred EeeeeeecceeeEEEEEeecccccccCCceeEEEccCC-CccccccCCCCCCCCCCCCCCCCcEEEEEEEeec----CCC
Q psy12060 355 FSALEQIDAGNYSCNVQSKVSDTGRNGPFFPLKVFPHS-NFQQLKFPNNFPKTFPEAPKAGDKVRLECVAFGY----PVP 429 (978)
Q Consensus 355 i~~~~~~d~G~Y~C~~~n~~~~~~~~~~~~~l~V~~~~-~~~~~~~~~~~~~~~~~~v~~G~~~~l~C~~~g~----p~~ 429 (978)
|......-.-.|...+.-..+..........|.+.... +...+..... ....+..++.+.|...+.+. ...
T Consensus 152 i~~~~l~~~~~y~f~ltv~k~~r~s~s~~~~v~v~~~~~p~v~I~~~~n----~~~~vn~~~~l~L~~~~~~~~~~~~~~ 227 (440)
T PF02010_consen 152 IPASTLSPGSTYTFTLTVSKGSRSSSSASQTVTVVSGDPPTVSISCVSN----CKGKVNPSERLVLQASCSSCDSDSSNV 227 (440)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred EEhHHcCCCceEEEEEEEEeCCCCceeeEEEEEeccCCCCceeEccccc----cccccCCCCCEEEEEEEeCCCCcCCCE
Confidence 64433322223666665443332122222334443221 1111111111 11236678888887666542 234
Q ss_pred eeEEEE--------cCccCC---CCceeeecccEEEeCCCCCCCCeEEEEEEE--eCCCce-EEEEEEEEEeece---ee
Q psy12060 430 SYNWTR--------RGSPLP---RNAYFENFNRILTIPNVKVEDQGEYICRAS--NDRSAL-ESSVTISIQAEPN---FT 492 (978)
Q Consensus 430 ~v~W~~--------~~~~l~---~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~--n~~g~~-~~~~~l~V~~~p~---~~ 492 (978)
.+.|.. ....+. ...........|.|..-.....+.|...+. +..+.. ..++.+.+..+|. ..
T Consensus 228 ~y~Wsl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Lvi~~~~l~~g~~Y~~~l~v~~~~~~~~~a~~~~~~n~pP~~g~c~ 307 (440)
T PF02010_consen 228 SYSWSLFSLDGVSDSNSELPDWSSMTTTGSSSSNLVIDPGVLEPGSTYTFRLTVTDSSGSSGSASISFTVNAPPSGGSCS 307 (440)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred EEEEEEeecccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 789987 111111 111112234567777666666778876554 333332 5667777777775 33
Q ss_pred ccCCcccccCCCceeEEEEeecC--CCCeeEEeE
Q psy12060 493 IPLTDKHMDNQADLTWTCEAFGV--PDVTYSWFR 524 (978)
Q Consensus 493 ~~~~~~~~~~g~~~~l~C~~~~~--p~~~i~W~~ 524 (978)
+.|.. -......+++.|.--.. .+..+.++.
T Consensus 308 v~P~~-G~al~T~Ft~~c~~~~d~~~pL~Y~f~~ 340 (440)
T PF02010_consen 308 VSPSS-GYALETTFTITCSGWTDDDQPLTYQFYY 340 (440)
T ss_dssp ----------------------------------
T ss_pred ccccc-cccccccccccccccccccccccccccc
Confidence 33332 24445678999974311 234566554
No 471
>PF02124 Marek_A: Marek's disease glycoprotein A; InterPro: IPR001038 Equid herpesvirus 1 (Equine herpesvirus 1, EHV-1) glycoprotein 13 (EHV-1 gp13) has the characteristic features of a membrane-spanning protein: an N-terminal signal sequence; a hydrophobic membrane anchor region; a charged C-terminal cytoplasmic tail; and an exterior domain with nine potential N-glycosylation sites []. EHV-1 gp13 is the structural homologue of the gC-like glycoproteins of the Human herpesvirus 1 (HHV-1) and Human herpesvirus 2 (HHV-2) (gC-1 and gC-2 respectively), Pseudorabies virus (strain Indiana-Funkhauser/Becker) (PRV) (gIII) and Human herpesvirus 3 (HHV-3) (gp66). Secretory glycoprotein GP57-65 precursor (glycoprotein A - GA) is similar to Herpesvirus glycoprotein C, and belongs to the immunoglobulin gene superfamily [, ]. GA is thought to play an immunoevasive role in the pathogenesis of Marek's disease. It is a candidate for causing the early-stage immunosuppression that occurs after MDHV infection.
Probab=81.98 E-value=45 Score=32.08 Aligned_cols=131 Identities=19% Similarity=0.322 Sum_probs=66.0
Q ss_pred eeEEEEcCccCCCCcee------e----ecccEEEeC-CCCCCCCeEEEEEEEeCCCce-----EEEEEEEEEeeceeec
Q psy12060 430 SYNWTRRGSPLPRNAYF------E----NFNRILTIP-NVKVEDQGEYICRASNDRSAL-----ESSVTISIQAEPNFTI 493 (978)
Q Consensus 430 ~v~W~~~~~~l~~~~~~------~----~~~~~L~i~-~~~~~d~G~Y~C~a~n~~g~~-----~~~~~l~V~~~p~~~~ 493 (978)
.++|+.||.++..+... . ...++|.+. +...+..=..+|.+.=..... +++..-.|..+|.+++
T Consensus 8 ~~~Wf~dg~~v~~~~~~~~~~~~~~G~~s~vStl~~~~~~~~~~pp~i~C~v~W~r~~v~~~r~~a~~~P~Vy~~P~vsv 87 (211)
T PF02124_consen 8 RFRWFEDGNPVEPRFIRDSSQVWSDGLFSRVSTLTLPGNSADSPPPSIRCQVTWYRDSVSETRFNATATPSVYPKPRVSV 87 (211)
T ss_pred EEEEEECCEeCCccceeeEEEEecCCcEEEEEEEEecCCCCCCCCCcceEEEEEccCCCeeeEeecccccceecCCEEEE
Confidence 68899999887643211 0 112346662 223333447899987543322 2233444666776654
Q ss_pred cCCcccccCCCceeEEEEeecCC--CCeeEEeECCEECCCCCCCCCCCCcEEEecCEEEEEeCCC-CCCCe--EEEEEEE
Q psy12060 494 PLTDKHMDNQADLTWTCEAFGVP--DVTYSWFRNGELLNSETLPLEDQDRYFIQDNVLTIRYLNP-ERDPA--MYQCRAK 568 (978)
Q Consensus 494 ~~~~~~~~~g~~~~l~C~~~~~p--~~~i~W~~~g~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~-~~d~G--~Y~C~a~ 568 (978)
. +.. -...|.+.--| ...+.|.-++.......... ..+.-....+...|....+ ....| .|+|...
T Consensus 88 ~-----F~~---g~AVC~A~CVP~~~v~l~W~v~d~~~~~~~~~~-~~g~C~~~pglvnirs~~pls~~~~~~~YtC~l~ 158 (211)
T PF02124_consen 88 R-----FED---GYAVCTARCVPRGNVTLRWSVGDDPSPAPAATE-ITGVCAEHPGLVNIRSRRPLSDEDGPVEYTCRLI 158 (211)
T ss_pred E-----ecC---CEEEEEcceeeCCCeEEEEEECCccCCCCCcee-ecCcccCCcceeEeecccCCCccCCceeEEEEEe
Confidence 2 222 24568776555 37999998776542110000 0000001122344444332 13445 8999987
Q ss_pred c
Q psy12060 569 N 569 (978)
Q Consensus 569 n 569 (978)
.
T Consensus 159 G 159 (211)
T PF02124_consen 159 G 159 (211)
T ss_pred e
Confidence 4
No 472
>PHA03282 envelope glycoprotein E; Provisional
Probab=81.83 E-value=33 Score=36.72 Aligned_cols=45 Identities=24% Similarity=0.343 Sum_probs=31.0
Q ss_pred CceEeecceEEEeCCCCCCCCeEEEEEEEeCceeE-EeEEEEEEEee
Q psy12060 249 KRFTLSGGNLIINDPRQVEDRGSYHCKASNKFGSI-ISESVQLAFGF 294 (978)
Q Consensus 249 ~~~~~~~~~l~i~~~~~~~d~G~Y~C~a~n~~g~~-~s~~~~l~v~~ 294 (978)
.+....|++|.|.++ +.+|+|.|+-.+...-... ....+.|.|..
T Consensus 117 ~rvs~~n~tl~l~~a-~~~DsG~Y~L~~~~~~~~~~~~~~v~l~V~p 162 (540)
T PHA03282 117 PRVAVVNGTLVLREA-RETDSGMYVLSVSRAPNSTAARAVVFLVVGP 162 (540)
T ss_pred cceeEecceEEEeec-cccCCceEEEEecCCCCchhheEEEEEEecC
Confidence 455677899999998 9999999999975433222 23345555543
No 473
>KOG4228|consensus
Probab=79.98 E-value=3.8 Score=48.79 Aligned_cols=100 Identities=21% Similarity=0.126 Sum_probs=63.0
Q ss_pred EEEecCCccCCCCCCCCCCCCCCCCCCCCCCceeecccccCcEEEEEEeCCCCCCCCCcceEEEEEEecCCccceeeeee
Q psy12060 860 VIAGNELGYGEPSSPSPQYNTPADKPYQAPSRIGGGGGKIGDLSISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETLK 939 (978)
Q Consensus 860 v~A~N~~G~g~~s~~~~~~~t~~~~P~~~P~~~~~~~~~~~si~v~W~~p~~~~~~g~i~~Y~i~~~~~~~~~~~~~~~~ 939 (978)
+.+.+..|.++++... .+.+.+..|..++ ...+.+.++++|.+++ ...|..|.+.+...+..........
T Consensus 144 ~~~~~~~~~~~~~t~i-~i~~~~~~p~~~~-----~~~~~~~it~~w~~~~----~~~~~~ykl~~~~~d~~~~~~v~~~ 213 (1087)
T KOG4228|consen 144 PLAIASPGLGPPSTYI-QITTNANSPIQPG-----EEEEYTTITGSWSPPH----AVSLDTYKLLHLDPDTGYEISVTLT 213 (1087)
T ss_pred ccccCCcccCCCCceE-EEeccCCCCCCCC-----cceEEEEEEecCCCCC----cccchhhhhhhcCCcccceeeeecc
Confidence 6777778888874443 6667777776655 5566788999999854 4567889998877643322222222
Q ss_pred eccceeEEEEEcCCCCceeeEEEEEEEecCCCCCC
Q psy12060 940 EYGNVGIAVVRIPSEFYYTEYEVKVQAINDVGPGP 974 (978)
Q Consensus 940 ~~~~~~~~~~~l~~L~p~t~Y~~~V~A~n~~G~gp 974 (978)
..+. .....+.|-..|.++..+....+.+-
T Consensus 214 ~~~~-----~~t~~~~~~~~~~~~~ae~~~~~~~~ 243 (1087)
T KOG4228|consen 214 PPGS-----GGTGDLGPPSISRFKCAEPDRGPLGS 243 (1087)
T ss_pred CCCC-----CcccCCCCcccccccccCccccccCC
Confidence 2211 22345677777777777766655543
No 474
>PHA03286 envelope glycoprotein E; Provisional
Probab=79.15 E-value=25 Score=37.47 Aligned_cols=83 Identities=16% Similarity=0.093 Sum_probs=46.4
Q ss_pred CcEEEeeeeeecceeeEEEEEeecccccccCCceeEEEccC--CCccccccCCCCCCC---------CCCCCCCCCcEEE
Q psy12060 351 GALYFSALEQIDAGNYSCNVQSKVSDTGRNGPFFPLKVFPH--SNFQQLKFPNNFPKT---------FPEAPKAGDKVRL 419 (978)
Q Consensus 351 ~~L~i~~~~~~d~G~Y~C~~~n~~~~~~~~~~~~~l~V~~~--~~~~~~~~~~~~~~~---------~~~~v~~G~~~~l 419 (978)
+.|.|.+++.+++|.|+-...|..+.. ....+-|.|... ...+++..|...+.. ......+||++.|
T Consensus 127 ~~L~I~nAt~qnaGiYtly~rnd~~~~--~~~vflVtV~~~~~~r~p~~~~pv~p~~~~~~f~l~ny~S~lF~~GDTF~v 204 (492)
T PHA03286 127 KELTILNASSQNAGIYIRYSRNGTRTA--VMDVLVVWVSGHGRARDPTMNIPITPPSTRVDLSLKNFKAFLYNVGDTVDA 204 (492)
T ss_pred CceEEeeccccccceEEEEEcCCCCcE--EEEEEEEEEecCCCCCCCCcccCCCCcccceEEEEecccceEecCCCeEEE
Confidence 469999999999999999988754322 122356666422 111112211110000 0112358999987
Q ss_pred EEEEe-e-cC---CCeeEEEE
Q psy12060 420 ECVAF-G-YP---VPSYNWTR 435 (978)
Q Consensus 420 ~C~~~-g-~p---~~~v~W~~ 435 (978)
.-... . .. ...|.|++
T Consensus 205 Sv~l~~~~~d~~Fsl~i~W~y 225 (492)
T PHA03286 205 SVTAHLTNWAGAFSLEFRVLF 225 (492)
T ss_pred EEEEeecccCCCceEEEEEEE
Confidence 76554 1 11 23799987
No 475
>cd03518 Link_domain_HAPLN_module_1 Link_domain_HAPLN_module_1; this link domain is found in the first link module of proteins similar to the vertebrate HAPLN (hyaluronan/HA and proteoglycan binding link) protein family which includes cartilage link protein. The link domain is a HA-binding domain. HAPLNs contain two contiguous link modules. Both link modules of cartilage link protein are involved in interaction with HA. In cartilage, a chondroitin sulfate proteoglycan core protein (CSPG) aggrecan forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Aggregates with other CSPGs substituting for aggregan may contribute to the structural integrity of many different tissues. Members of the vertebrate HAPLN gene family are physically linked adjacent to CSPG genes.
Probab=79.11 E-value=1.3 Score=35.95 Aligned_cols=22 Identities=23% Similarity=0.357 Sum_probs=20.3
Q ss_pred CCCHHHHHHHhhhcCCeeeeeC
Q psy12060 48 LKTRNDAKLNCKSLDSDLANVN 69 (978)
Q Consensus 48 ~~~~~~A~~~C~~~~~~L~~i~ 69 (978)
+.||.||++.|+..|+.||+..
T Consensus 13 ~l~f~eA~~aC~~~ga~lAs~~ 34 (95)
T cd03518 13 NLNFHEAQQACEEQDATLASFE 34 (95)
T ss_pred ccCHHHHHHHHHHcCCeeCCHH
Confidence 5799999999999999999983
No 476
>KOG1026|consensus
Probab=79.09 E-value=2.8 Score=48.28 Aligned_cols=154 Identities=15% Similarity=0.214 Sum_probs=89.4
Q ss_pred CCCCCCcEEEEEEEeecCCCeeEEEEcCccCCCCceeeec--ccEEEeCCCCCCCCeEEEEEEEeCCCceEEEEEEEEEe
Q psy12060 410 APKAGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYFENF--NRILTIPNVKVEDQGEYICRASNDRSALESSVTISIQA 487 (978)
Q Consensus 410 ~v~~G~~~~l~C~~~g~p~~~v~W~~~~~~l~~~~~~~~~--~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~ 487 (978)
.+..|..+++.|.+.+.|.|.+.|+.++............ +....+.+ +.|.++|..|.....+.+.+..
T Consensus 203 ~v~~~~~~~~~c~~~~~~vp~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~--------~~c~~E~~~~~~~~~v~~~~~~ 274 (774)
T KOG1026|consen 203 TVEEGSSITLKCSQAGIPVPCHYWFPNCLASSNTNQTSSLCRSECEVLEN--------DLCIAENAVARSNPSILLVVDL 274 (774)
T ss_pred hhcccchheeeeecccCCCcceeeecccccccCCCcccccccccceeeec--------hhhHHHHhhhhcCceeeeEEec
Confidence 5568999999999999999999999887665443321111 11111111 8999999998888888877776
Q ss_pred eceeeccCCcccccCCCceeEEEEee---cCCCCeeEEeECCEECCCCCC-CCCCCCcEEEecCEEEEEeCCCCCCCeEE
Q psy12060 488 EPNFTIPLTDKHMDNQADLTWTCEAF---GVPDVTYSWFRNGELLNSETL-PLEDQDRYFIQDNVLTIRYLNPERDPAMY 563 (978)
Q Consensus 488 ~p~~~~~~~~~~~~~g~~~~l~C~~~---~~p~~~i~W~~~g~~~~~~~~-~~~~~~~~~~~~~~l~i~~~~~~~d~G~Y 563 (978)
++..........- .-.|... +.|.+...|..++..+..... ....... ..-+....-. ..+.|.|
T Consensus 275 p~~~~~~~~~~~~------~~~C~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~t~s~~----~~C~~~~~~~-h~~~~~~ 343 (774)
T KOG1026|consen 275 PKAEVLLCSPLSD------HHNCIPIGITANPGPALHWCYNGSGLNYRGTVCVTKSGK----EQCLPWNDPP-HSHNGNY 343 (774)
T ss_pred ccccccCCCCccc------cCceeeeeccCCCCCceeeeecCccceEecccccccccC----cCCcccCcCc-ccccCcc
Confidence 6543322211111 3334433 456777888887765431110 0000000 0111111112 3678999
Q ss_pred EEEEEcCCCceeeEEEEEE
Q psy12060 564 QCRAKNQLKTRYSSAQLRV 582 (978)
Q Consensus 564 ~C~a~n~~g~~~~~~~l~v 582 (978)
+|.+.+..|.........+
T Consensus 344 ~~~~e~~~g~~~~r~~g~~ 362 (774)
T KOG1026|consen 344 TLFPELPGGKNYCRNPGGF 362 (774)
T ss_pred eeeecccCccccccCcCcc
Confidence 9999998776654443333
No 477
>cd03521 Link_domain_KIAA0527_like Link_domain_KIAA0527_like; this domain is found in the human protein KIAA0527. Sequence-wise, it is highly similar to the link domain. The link domain is a hyaluronan-binding (HA) domain. KIAA0527 contains a single link module. The KIAA0527 gene was originally cloned from human brain tissue.
Probab=79.01 E-value=1.4 Score=34.76 Aligned_cols=22 Identities=27% Similarity=0.303 Sum_probs=20.3
Q ss_pred CCCHHHHHHHhhhcCCeeeeeC
Q psy12060 48 LKTRNDAKLNCKSLDSDLANVN 69 (978)
Q Consensus 48 ~~~~~~A~~~C~~~~~~L~~i~ 69 (978)
+.++.||++.|++.|+.||++.
T Consensus 13 ~l~f~eA~~AC~~~gA~lAs~~ 34 (95)
T cd03521 13 GLGLRAARQSCASLGARLASAA 34 (95)
T ss_pred ccCHHHHHHHHHHcCCEeccHH
Confidence 5799999999999999999983
No 478
>PF08391 Ly49: Ly49-like protein, N-terminal region; InterPro: IPR013600 The sequences making up this entry are annotated as, or are similar to, Ly49 receptors (e.g. P20937 from SWISSPROT). These are type II transmembrane receptors expressed by mouse natural killer (NK) cells. They are classified as being activating (e.g.Ly49D and H) or inhibitory (e.g. Ly49A and G), depending on their effect on NK cell function []. They are members of the C-type lectin receptor superfamily [], and in fact in many family members this region is found immediately N-terminal to a lectin C-type domain (IPR001304 from INTERPRO). ; PDB: 1QO3_D 3C8J_D 1P4L_D 3C8K_D 3G8K_B 1JA3_B 3CAD_A 3G8L_A.
Probab=78.70 E-value=1.3 Score=37.71 Aligned_cols=23 Identities=30% Similarity=0.794 Sum_probs=18.3
Q ss_pred ccccccccccccceeccCeeEEE
Q psy12060 21 TIDELELRCPQHWVQYRDSCYRF 43 (978)
Q Consensus 21 ~~~~~~~~Cp~~w~~~~~~Cy~~ 43 (978)
+....+..||..|.-+|.+||+|
T Consensus 97 s~q~~g~~~e~~W~cyg~kCYYF 119 (119)
T PF08391_consen 97 SSQHTGKPCEKHWFCYGVKCYYF 119 (119)
T ss_dssp -TTSTT-EEECEEEEETTEEEEE
T ss_pred hhhcCCCCCCCceeeeCceeeeC
Confidence 44456778999999999999998
No 479
>cd03515 Link_domain_TSG_6_like This is the extracellular link domain of the type found in human TSG-6. The link domain is a hyaluronan (HA)-binding domain. TSG-6 is the protein product of tumor necrosis factor-stimulated gene-6. TSG-6 is up-regulated in inflammatory lesions and in the ovary during ovulation. It has a strong anti-inflammatory and chondroprotective effect in models of acute inflammation and autoimmune arthritis and plays an essential role in female fertility. Also included in this group are the stabilins: stabilin-1 (FEEL-1, CLEVER-1) and stabilin-2 (FEEL-2). Stabilin-2 functions as the major liver and lymph node-scavenging receptor for HA and related glycosaminoglycans. Stabilin-2 is a scavenger receptor with a broad range of ligands including advanced glycation end (AGE) products, acetylated low density lipoprotein and procollagen peptides. In contrast, stabilin-1 does not bind HA, but binds acetylated low density lipoprotein and AGEs with lower affinity. As AGEs accum
Probab=78.17 E-value=1.3 Score=35.78 Aligned_cols=22 Identities=27% Similarity=0.351 Sum_probs=20.3
Q ss_pred CCCHHHHHHHhhhcCCeeeeeC
Q psy12060 48 LKTRNDAKLNCKSLDSDLANVN 69 (978)
Q Consensus 48 ~~~~~~A~~~C~~~~~~L~~i~ 69 (978)
+.|+.||++.|+..|+.||+..
T Consensus 13 ~l~f~eA~~aC~~~ga~lAs~~ 34 (93)
T cd03515 13 KLTYTEAKAACEAEGAHLATYS 34 (93)
T ss_pred ccCHHHHHHHHHHcCCccCCHH
Confidence 5899999999999999999983
No 480
>PHA02865 MHC-like TNF binding protein; Provisional
Probab=77.97 E-value=4.6 Score=41.69 Aligned_cols=22 Identities=27% Similarity=0.727 Sum_probs=19.1
Q ss_pred CeEEEeCCCCCCCC-ceEEEecc
Q psy12060 312 GKAMFCDPPTNYPG-VNYYWARD 333 (978)
Q Consensus 312 ~~~l~C~~~~~~p~-~~i~W~~~ 333 (978)
.++|+|.+.+.+|. +.+.|.||
T Consensus 216 ~~tL~C~A~GFYP~~I~v~W~kd 238 (338)
T PHA02865 216 NTTLFCTFDSHYPSSVAAKWYNS 238 (338)
T ss_pred CceEEEEEEeEeCCccEEEEEec
Confidence 47999999888887 68999999
No 481
>PF07495 Y_Y_Y: Y_Y_Y domain; InterPro: IPR011123 This region is mostly found at the end of the beta propellers (IPR011110 from INTERPRO) in a family of two component regulators. However they are also found tandemly repeated in Q891H4 from SWISSPROT without other signal conduction domains being present. It is named after the conserved tyrosines found in the alignment. The exact function is not known.; PDB: 3V9F_D 3VA6_B 3OTT_B 4A2M_D 4A2L_B.
Probab=77.74 E-value=4.3 Score=30.81 Aligned_cols=46 Identities=15% Similarity=0.156 Sum_probs=26.7
Q ss_pred EEEEEecC-CccceeeeeeeccceeEEEEEcCCCCceeeEEEEEEEecCCCCCC
Q psy12060 922 KIFWRKKN-DTEFQSETLKEYGNVGIAVVRIPSEFYYTEYEVKVQAINDVGPGP 974 (978)
Q Consensus 922 ~i~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~L~p~t~Y~~~V~A~n~~G~gp 974 (978)
+..|+-.+ +.+|....... . .+.+..|.|| .|.|.|+|.+..|.-.
T Consensus 9 ~Y~Y~l~g~d~~W~~~~~~~----~--~~~~~~L~~G-~Y~l~V~a~~~~~~~~ 55 (66)
T PF07495_consen 9 RYRYRLEGFDDEWITLGSYS----N--SISYTNLPPG-KYTLEVRAKDNNGKWS 55 (66)
T ss_dssp EEEEEEETTESSEEEESSTS-------EEEEES--SE-EEEEEEEEEETTS-B-
T ss_pred EEEEEEECCCCeEEECCCCc----E--EEEEEeCCCE-EEEEEEEEECCCCCcC
Confidence 34444443 45666542211 1 3567899988 7999999999887643
No 482
>PF00193 Xlink: Extracellular link domain; InterPro: IPR000538 The link domain [] is a hyaluronan(HA)-binding region found in proteins of vertebrates that are involved in the assembly of extracellular matrix, cell adhesion, and migration. The structure has been shown [] to consist of two alpha helices and two antiparallel beta sheets arranged around a large hydrophobic core similar to that of C-type lectin. This domain contains four conserved cysteines involved in two disulphide bonds. The link domain has also been termed HABM [] (HA binding module) and PTR [] (proteoglycan tandem repeat). Proteins with such a domain include the proteoglycans aggrecan, brevican, neurocan and versican, which are expressed in the CNS; the cartilage link protein (LP), a proteoglycan that together with HA and aggrecan forms multimolecular aggregates; Tumour necrosis factor-inducible protein TSG-6, which may be involved in cell-cell and cell-matrix interactions during inflammation and tumourgenesis; and CD44 antigen, the main cell surface receptor for HA.; GO: 0005540 hyaluronic acid binding, 0007155 cell adhesion; PDB: 1O7B_T 2PF5_C 1O7C_T 2JCQ_A 2JCR_A 2JCP_A 1UUH_B 1POZ_A 2I83_A.
Probab=77.51 E-value=1.9 Score=35.24 Aligned_cols=23 Identities=26% Similarity=0.404 Sum_probs=17.7
Q ss_pred CCCHHHHHHHhhhcCCeeeeeCC
Q psy12060 48 LKTRNDAKLNCKSLDSDLANVND 70 (978)
Q Consensus 48 ~~~~~~A~~~C~~~~~~L~~i~~ 70 (978)
+.+|.+|++.|+++|+.||+...
T Consensus 13 ~l~f~eA~~~C~~~ga~LAs~~q 35 (92)
T PF00193_consen 13 KLTFTEAQQACRALGARLASPEQ 35 (92)
T ss_dssp SB-HHHHHHHHHHTTCBE--HHH
T ss_pred cCcHHHHHHHHHHcCCeeCCHHH
Confidence 47999999999999999998843
No 483
>cd05890 Ig2_Nectin-1_like Second immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111) and similar proteins. Ig2_Nectin-1_like: domain similar to the second immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111). Nectin-1 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectins also heterophilically trans-interact with other CAMs such as nectin-like molecules (necls); nectin-1 for example, has been shown to trans-interact with necl-1. Nectins also interact with various other proteins, including the actin filament (F-actin)-binding protein, afadin. Mutation in the human nectin-1 gene is associ
Probab=77.46 E-value=21 Score=29.03 Aligned_cols=74 Identities=15% Similarity=0.240 Sum_probs=40.8
Q ss_pred EEEEEE-eecCCCCeEEEEEcccccccccccccCCCCCCceEeecceEEEeCCCCCCCCeEEEEEEEeCceeEEeEEEEE
Q psy12060 212 ITLSCY-AGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVEDRGSYHCKASNKFGSIISESVQL 290 (978)
Q Consensus 212 ~~l~C~-~~g~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~d~G~Y~C~a~n~~g~~~s~~~~l 290 (978)
+.-+|. +.|.|++.|+|.-+=. +....... ...++.+.+....+.+.. ...|.-.-+|++....-+ ...+++|
T Consensus 23 ~VA~CiSa~GrPpa~ItW~t~l~--G~~etq~~-~~~~GT~TV~S~y~lVPs--~~~~gk~lTCvV~h~~~~-~~~~~~L 96 (98)
T cd05890 23 LVATCVSANGKPPSVVRWDTRLK--GEAEFQEI-RNQNGTVTVISRYRLVPS--REAHKQKLTCIVNYRNDR-FTDSVTL 96 (98)
T ss_pred EEEEEEcCCCcCCcEeEEEccCC--Cceeeeee-CCCCCCEEEEEEEEEeEC--HHHcCCEeEEEEEecccc-ccccEEe
Confidence 778999 5799999999985421 11111111 112233333333333433 567888999999875322 2234444
Q ss_pred E
Q psy12060 291 A 291 (978)
Q Consensus 291 ~ 291 (978)
+
T Consensus 97 ~ 97 (98)
T cd05890 97 N 97 (98)
T ss_pred c
Confidence 3
No 484
>PLN02533 probable purple acid phosphatase
Probab=76.73 E-value=12 Score=41.39 Aligned_cols=79 Identities=18% Similarity=0.184 Sum_probs=45.1
Q ss_pred CCCCCCceEEEEeeCCeeEEEeecCCCCCCCceeEEEEEeeccccCceEeccccccee---eeecCCceeeEEeeccCCC
Q psy12060 777 PPGLPGGVQVVEVHKTSATIQWTDGATNGRPITHYKIIARTNWNSTWFNVSEHVIGKE---VDRYTGRKEASIENVLVPW 853 (978)
Q Consensus 777 ~P~~P~~~~~~~~~~~~v~l~W~~p~~~~~~i~~Y~v~~~~~~~~~w~~~~~~~~~~~---~~~~~~~~~~~~~~~L~p~ 853 (978)
.|..|..+++.-...++++|+|.-.... .+ .|+|.......+.........-. ......-....|.+ |+|+
T Consensus 40 ~~~~P~qvhls~~~~~~m~V~W~T~~~~-~~----~V~yG~~~~~l~~~a~g~~~~~~~~~~~~~g~iH~v~l~~-L~p~ 113 (427)
T PLN02533 40 DPTHPDQVHISLVGPDKMRISWITQDSI-PP----SVVYGTVSGKYEGSANGTSSSYHYLLIYRSGQINDVVIGP-LKPN 113 (427)
T ss_pred CCCCCceEEEEEcCCCeEEEEEECCCCC-CC----EEEEecCCCCCcceEEEEEEEEeccccccCCeEEEEEeCC-CCCC
Confidence 4667888888777788999999975432 12 35555433322222211111000 00001123457889 9999
Q ss_pred ceeEEEEE
Q psy12060 854 STYEFKVI 861 (978)
Q Consensus 854 ~~Y~~~v~ 861 (978)
+.|.|||-
T Consensus 114 T~Y~Yrvg 121 (427)
T PLN02533 114 TVYYYKCG 121 (427)
T ss_pred CEEEEEEC
Confidence 99999984
No 485
>PHA03189 UL14 tegument protein; Provisional
Probab=75.30 E-value=28 Score=34.92 Aligned_cols=21 Identities=10% Similarity=-0.069 Sum_probs=16.3
Q ss_pred CCcccccCCCceeEEEEeecC
Q psy12060 495 LTDKHMDNQADLTWTCEAFGV 515 (978)
Q Consensus 495 ~~~~~~~~g~~~~l~C~~~~~ 515 (978)
+.+..+..|+.+++.|.+...
T Consensus 59 pAP~l~pyGdrvtVpC~fp~H 79 (348)
T PHA03189 59 PAPLLVPYGDRVTVPCTFPTH 79 (348)
T ss_pred CCccccCCCceeeeeeeecCC
Confidence 455667899999999997643
No 486
>PF02480 Herpes_gE: Alphaherpesvirus glycoprotein E; InterPro: IPR003404 Glycoprotein E (gE) of Alphaherpesvirus forms a complex with glycoprotein I (gI), functioning as an immunoglobulin G (IgG) Fc binding protein. gE is involved in virus spread but is not essential for propagation [].; GO: 0016020 membrane; PDB: 2GJ7_F 2GIY_B.
Probab=74.94 E-value=5 Score=44.00 Aligned_cols=85 Identities=15% Similarity=0.153 Sum_probs=12.6
Q ss_pred CCcEEEeeeeeecceeeEEEEEeecccccccCCceeEEEccCCCccccccCC--CCCCCC----------CCCCCCCCcE
Q psy12060 350 DGALYFSALEQIDAGNYSCNVQSKVSDTGRNGPFFPLKVFPHSNFQQLKFPN--NFPKTF----------PEAPKAGDKV 417 (978)
Q Consensus 350 ~~~L~i~~~~~~d~G~Y~C~~~n~~~~~~~~~~~~~l~V~~~~~~~~~~~~~--~~~~~~----------~~~v~~G~~~ 417 (978)
.+.|.|.+++.+|+|.|+-...+..+..... .+.|.|..+...+....|. ..+... .....+|+++
T Consensus 88 ~~~l~i~~a~~~~~GvY~l~~~~~~~~~~~~--~~~v~v~~~~~~~~~p~p~~p~~p~~~~~~~~~~~~~s~vf~~Gdtf 165 (439)
T PF02480_consen 88 KGGLSILNATEQDSGVYTLYVRNDSGWAHQS--VVFVTVKGPAPDPRTPPPHHPIVPHRHGATFHLKNYHSHVFSPGDTF 165 (439)
T ss_dssp ------------------------------------------------------------SEEEEEE--SEEE--TT--E
T ss_pred CCceEEeccccccCeeEEEEecCCCCceEEE--EEEEEEcCCCcCCCCCCCCCCCCCcccccEEEEeccceEEecCCCcE
Confidence 4679999999999999999998665433222 2566666543331111111 001000 0123689999
Q ss_pred EEEEEEee--cC-C---CeeEEEEc
Q psy12060 418 RLECVAFG--YP-V---PSYNWTRR 436 (978)
Q Consensus 418 ~l~C~~~g--~p-~---~~v~W~~~ 436 (978)
.|.-.+.. .. . ..|.|++-
T Consensus 166 ~~~v~l~~~~~d~~~f~~~i~W~~~ 190 (439)
T PF02480_consen 166 HLSVHLQSEAHDDPPFSLEIDWYYM 190 (439)
T ss_dssp E---EEEEEESSS--EEEEEEEEEE
T ss_pred EEeEEEEeccCCCCCeeEEEEEEEe
Confidence 88877652 22 2 27999883
No 487
>PF06832 BiPBP_C: Penicillin-Binding Protein C-terminus Family; InterPro: IPR009647 This conserved region of approximately 90 residues is found in a sub-group of bacterial Penicillin-Binding Proteins (PBPs). A variable length loop region separates this region from the transpeptidase unit (IPR001460 from INTERPRO). It is predicted to be a beta fold.
Probab=73.49 E-value=38 Score=27.56 Aligned_cols=56 Identities=18% Similarity=0.311 Sum_probs=36.6
Q ss_pred eEEEEEeeccCCCCeeEEeeCCEEecCCCcEEEeecCcEEEccccCCCCEEEEEEEEeCCceeee
Q psy12060 605 NVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTATNVHGMDES 669 (978)
Q Consensus 605 ~~~l~C~~~~~p~~~i~W~~~g~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~ 669 (978)
...|.+.+.+. ...+.|+-||..+..... ...+.+. ....|.|+..+....|....
T Consensus 31 ~~~l~l~a~~~-~~~~~W~vdg~~~g~~~~-----~~~~~~~---~~~~G~h~l~vvD~~G~~~~ 86 (89)
T PF06832_consen 31 RQPLVLKAAGG-RGPVYWFVDGEPLGTTQP-----GHQLFWQ---PDRPGEHTLTVVDAQGRSAS 86 (89)
T ss_pred cceEEEEEeCC-CCcEEEEECCEEcccCCC-----CCeEEeC---CCCCeeEEEEEEcCCCCEEE
Confidence 44555555555 448999999999843321 1223333 35679999999988887654
No 488
>cd05890 Ig2_Nectin-1_like Second immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111) and similar proteins. Ig2_Nectin-1_like: domain similar to the second immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111). Nectin-1 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectins also heterophilically trans-interact with other CAMs such as nectin-like molecules (necls); nectin-1 for example, has been shown to trans-interact with necl-1. Nectins also interact with various other proteins, including the actin filament (F-actin)-binding protein, afadin. Mutation in the human nectin-1 gene is associ
Probab=73.46 E-value=9.8 Score=30.83 Aligned_cols=57 Identities=12% Similarity=0.221 Sum_probs=35.7
Q ss_pred EEEeCCCCCCCCceEEEecccccccccccceEEEeeCCc------EEEeeeeeecceeeEEEEEee
Q psy12060 314 AMFCDPPTNYPGVNYYWARDYFPNFVEEDKRVFVSYDGA------LYFSALEQIDAGNYSCNVQSK 373 (978)
Q Consensus 314 ~l~C~~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~------L~i~~~~~~d~G~Y~C~~~n~ 373 (978)
.=+|.+..|.|+..|+|.-+-.- ....+.....+|+ +.+-.....|.-..+|.+...
T Consensus 24 VA~CiSa~GrPpa~ItW~t~l~G---~~etq~~~~~~GT~TV~S~y~lVPs~~~~gk~lTCvV~h~ 86 (98)
T cd05890 24 VATCVSANGKPPSVVRWDTRLKG---EAEFQEIRNQNGTVTVISRYRLVPSREAHKQKLTCIVNYR 86 (98)
T ss_pred EEEEEcCCCcCCcEeEEEccCCC---ceeeeeeCCCCCCEEEEEEEEEeECHHHcCCEeEEEEEec
Confidence 35799889999999999864211 1111122223443 344455667777999999875
No 489
>PLN02533 probable purple acid phosphatase
Probab=73.44 E-value=21 Score=39.37 Aligned_cols=75 Identities=16% Similarity=0.049 Sum_probs=45.5
Q ss_pred CCCCCCCceeecccccCcEEEEEEeCCCCCCCCCcceEEEEEEecCCccceeee-e-ee------ccceeEEEEEcCCCC
Q psy12060 884 KPYQAPSRIGGGGGKIGDLSISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSET-L-KE------YGNVGIAVVRIPSEF 955 (978)
Q Consensus 884 ~P~~~P~~~~~~~~~~~si~v~W~~p~~~~~~g~i~~Y~i~~~~~~~~~~~~~~-~-~~------~~~~~~~~~~l~~L~ 955 (978)
..+..|+.+.+.-...++|.|+|.... .. . =.|+|....+.-+.... . .. ........+.|.+|+
T Consensus 39 ~~~~~P~qvhls~~~~~~m~V~W~T~~--~~-~----~~V~yG~~~~~l~~~a~g~~~~~~~~~~~~~g~iH~v~l~~L~ 111 (427)
T PLN02533 39 DDPTHPDQVHISLVGPDKMRISWITQD--SI-P----PSVVYGTVSGKYEGSANGTSSSYHYLLIYRSGQINDVVIGPLK 111 (427)
T ss_pred CCCCCCceEEEEEcCCCeEEEEEECCC--CC-C----CEEEEecCCCCCcceEEEEEEEEeccccccCCeEEEEEeCCCC
Confidence 344678888887767889999999832 21 1 23667654422222111 0 00 001122346799999
Q ss_pred ceeeEEEEEE
Q psy12060 956 YYTEYEVKVQ 965 (978)
Q Consensus 956 p~t~Y~~~V~ 965 (978)
|+|.|..+|.
T Consensus 112 p~T~Y~Yrvg 121 (427)
T PLN02533 112 PNTVYYYKCG 121 (427)
T ss_pred CCCEEEEEEC
Confidence 9999999995
No 490
>PF06328 Lep_receptor_Ig: Ig-like C2-type domain; InterPro: IPR010457 This entry represents a ligand-binding domain that displays similarity to C2-set immunoglobulin domains (antibody constant domain 2) []. The two cysteine residues form a disulphide bridge.; PDB: 3L5H_A 1P9M_A 1I1R_A 2D9Q_B.
Probab=72.76 E-value=22 Score=28.97 Aligned_cols=61 Identities=18% Similarity=0.427 Sum_probs=38.1
Q ss_pred eecCCCeEEEEEeeccC-----CCCeeEEeeCCEEecCCCcEEEeecCc--EEEccccCCCCEEEEEEE
Q psy12060 599 YAGEGGNVTIFCNPEAA-----PKPKFVWKKDGNIIGSGGRRKIFENGN--LLISPVSRDDSGIYSCTA 660 (978)
Q Consensus 599 ~~~~g~~~~l~C~~~~~-----p~~~i~W~~~g~~~~~~~~~~~~~~~~--l~i~~~~~~d~G~Y~C~a 660 (978)
.+..|++++..|..... ....|.|+.++..++.+ ++....++. +++.+.....+-.|-|..
T Consensus 14 vv~lGS~vtasC~l~~~c~~~~~a~~I~Wkln~~~iP~~-qy~~in~~~SsVT~~~~~~~~~~L~cC~l 81 (89)
T PF06328_consen 14 VVSLGSNVTASCVLKQNCSHSVNASQIVWKLNGEKIPGS-QYRVINDTVSSVTLPNLNPTGATLFCCKL 81 (89)
T ss_dssp EEETTS-EEEEEEE-CCCHCT-STTCEEEECSSCESTCG-CEEEESTTEEEEEESS--SSEEEEEEEEE
T ss_pred EEeCCCCEEEEEEEECCCCCCcccceEEEEECCEECChh-HcceeCCeEEEEEEccCCCCCceEEEEEE
Confidence 37789999999997532 34589999999866554 444444443 666666555555666663
No 491
>PF02124 Marek_A: Marek's disease glycoprotein A; InterPro: IPR001038 Equid herpesvirus 1 (Equine herpesvirus 1, EHV-1) glycoprotein 13 (EHV-1 gp13) has the characteristic features of a membrane-spanning protein: an N-terminal signal sequence; a hydrophobic membrane anchor region; a charged C-terminal cytoplasmic tail; and an exterior domain with nine potential N-glycosylation sites []. EHV-1 gp13 is the structural homologue of the gC-like glycoproteins of the Human herpesvirus 1 (HHV-1) and Human herpesvirus 2 (HHV-2) (gC-1 and gC-2 respectively), Pseudorabies virus (strain Indiana-Funkhauser/Becker) (PRV) (gIII) and Human herpesvirus 3 (HHV-3) (gp66). Secretory glycoprotein GP57-65 precursor (glycoprotein A - GA) is similar to Herpesvirus glycoprotein C, and belongs to the immunoglobulin gene superfamily [, ]. GA is thought to play an immunoevasive role in the pathogenesis of Marek's disease. It is a candidate for causing the early-stage immunosuppression that occurs after MDHV infection.
Probab=72.43 E-value=96 Score=29.95 Aligned_cols=100 Identities=17% Similarity=0.299 Sum_probs=51.1
Q ss_pred eeEEeeCCEEecCCC---cEEEeecC------cEEE-ccccCCCCEEEEEEEEeCCceeeeeEEEEEEeCCceeeeCCCc
Q psy12060 619 KFVWKKDGNIIGSGG---RRKIFENG------NLLI-SPVSRDDSGIYSCTATNVHGMDESKGRLIVLHGPSYYEQLPPK 688 (978)
Q Consensus 619 ~i~W~~~g~~~~~~~---~~~~~~~~------~l~i-~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~p~~~~~~~~~ 688 (978)
.+.|+.||..+.... ......+| +|++ .+...+..-..+|.+.=..+....+. +.-...|... .++.
T Consensus 8 ~~~Wf~dg~~v~~~~~~~~~~~~~~G~~s~vStl~~~~~~~~~~pp~i~C~v~W~r~~v~~~r-~~a~~~P~Vy--~~P~ 84 (211)
T PF02124_consen 8 RFRWFEDGNPVEPRFIRDSSQVWSDGLFSRVSTLTLPGNSADSPPPSIRCQVTWYRDSVSETR-FNATATPSVY--PKPR 84 (211)
T ss_pred EEEEEECCEeCCccceeeEEEEecCCcEEEEEEEEecCCCCCCCCCcceEEEEEccCCCeeeE-eeccccccee--cCCE
Confidence 688999888776432 11222234 2444 22223334478999874433222221 1111122221 1233
Q ss_pred eEEEccccEEEEEEeeecCCcCeEEEEeeCCEEc
Q psy12060 689 ITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRI 722 (978)
Q Consensus 689 ~~~~~g~~~~l~C~~~~~p~~~~~~~W~~~g~~~ 722 (978)
+.+.. ..-...|.+.-.|...+.+.|.-++...
T Consensus 85 vsv~F-~~g~AVC~A~CVP~~~v~l~W~v~d~~~ 117 (211)
T PF02124_consen 85 VSVRF-EDGYAVCTARCVPRGNVTLRWSVGDDPS 117 (211)
T ss_pred EEEEe-cCCEEEEEcceeeCCCeEEEEEECCccC
Confidence 33333 3344568888777666899999877653
No 492
>KOG3632|consensus
Probab=71.83 E-value=2.3 Score=49.14 Aligned_cols=156 Identities=15% Similarity=0.079 Sum_probs=93.2
Q ss_pred CCceEEEEeeCCeeEEEeecCCCC--CCCceeEEEEEeeccccCceEecccccceeeeecCCceeeEEeeccC-CCceeE
Q psy12060 781 PGGVQVVEVHKTSATIQWTDGATN--GRPITHYKIIARTNWNSTWFNVSEHVIGKEVDRYTGRKEASIENVLV-PWSTYE 857 (978)
Q Consensus 781 P~~~~~~~~~~~~v~l~W~~p~~~--~~~i~~Y~v~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~L~-p~~~Y~ 857 (978)
|....++.....++.|.|++|... -.+...|-+......... ......+...+.. |. ....|+
T Consensus 581 pr~~~~vkqla~sv~vawepps~pP~~~~~~~~~~~v~~elrq~-------------l~~gs~tka~~E~-ld~~a~s~~ 646 (1335)
T KOG3632|consen 581 PRTGAAVKQLAGSVHVAWEPPSSPPFTAPARMIGATVLMELRQT-------------LYAGSLTKAMQES-LDNSAHSGY 646 (1335)
T ss_pred ccchhhhhhhccceeeeccCCCCCCccccceeeeeecchhhhhh-------------cccccchHHHHhh-ccccCCcee
Confidence 455666678889999999997643 245666666432211100 0001122222222 32 345788
Q ss_pred EEEEEecCCccCCCCCCCCCCCCCCCCCCCCCCceeecccccCcEEEEEEeCCCCCCCCCcceEEEEEEecCCccceeee
Q psy12060 858 FKVIAGNELGYGEPSSPSPQYNTPADKPYQAPSRIGGGGGKIGDLSISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSET 937 (978)
Q Consensus 858 ~~v~A~N~~G~g~~s~~~~~~~t~~~~P~~~P~~~~~~~~~~~si~v~W~~p~~~~~~g~i~~Y~i~~~~~~~~~~~~~~ 937 (978)
+.|.+....|.......+ .-+...+| .+|.++++...+.++..++|-+-.+ |- -- +.|-... +....
T Consensus 647 isvq~ltSrGsqd~lrc~--Llvgg~a~-vvpsqlrv~n~tqtSa~itwvp~ns---n~---~H-viyln~e--E~~ps- 713 (1335)
T KOG3632|consen 647 ISVQRLTSRGSQDQLRCI--LLVGGAAP-VVPSQLRVWNATQTSAMITWVPFNS---NF---LH-VIYLNAE--EPRPS- 713 (1335)
T ss_pred eehhhhhccCCCCcceee--Eecccccc-ccchhhhhhhhhchhhheeeeecCC---Cc---ce-eeecCCc--cCCCc-
Confidence 888899999988876653 23334455 8899999999999999999998322 21 11 2232221 11111
Q ss_pred eeeccceeEEEEEcCCCCceeeEEEEEEEec
Q psy12060 938 LKEYGNVGIAVVRIPSEFYYTEYEVKVQAIN 968 (978)
Q Consensus 938 ~~~~~~~~~~~~~l~~L~p~t~Y~~~V~A~n 968 (978)
+. ..+.+++-+|.|++.|.++|-|.-
T Consensus 714 ~a-----~~y~ytf~~lrpgt~y~a~vea~~ 739 (1335)
T KOG3632|consen 714 VA-----EMYNYTFMRLRPGTDYWASVEAAL 739 (1335)
T ss_pred hh-----hhhHHHHhccCCCCccceeccccc
Confidence 11 113355789999999999998754
No 493
>cd03517 Link_domain_CSPGs_modules_1_3 Link_domain_CSPGs_modules_1_3; this extracellular link domain is found in the first and third link modules of the chondroitin sulfate proteoglycan core protein (CSPG) aggrecan. In addition, it is found in the first link module of three other CSPGs: versican, neurocan, and brevican. The link domain is a hyaluronan (HA)-binding domain. CSPGs are characterized by an N-terminal globular domain (G1 domain) containing two contiguous link modules (modules 1 and 2). Both link modules of the G1 domain of aggrecan are involved in interaction with HA. In addition, aggrecan contains a second globular domain (G2) which contains link modules 3 and 4. G2 appears to lack HA-binding activity. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues.
Probab=71.82 E-value=1.9 Score=35.08 Aligned_cols=23 Identities=17% Similarity=0.250 Sum_probs=20.6
Q ss_pred CCCHHHHHHHhhhcCCeeeeeCC
Q psy12060 48 LKTRNDAKLNCKSLDSDLANVND 70 (978)
Q Consensus 48 ~~~~~~A~~~C~~~~~~L~~i~~ 70 (978)
+.|+.||++.|+.+|+.||+...
T Consensus 13 ~l~f~eA~~aC~~~ga~lAs~~Q 35 (95)
T cd03517 13 ALTFPRAQRACLDISAQIATPEQ 35 (95)
T ss_pred eECHHHHHHHHHHcCCEeCCHHH
Confidence 47999999999999999999843
No 494
>PF06328 Lep_receptor_Ig: Ig-like C2-type domain; InterPro: IPR010457 This entry represents a ligand-binding domain that displays similarity to C2-set immunoglobulin domains (antibody constant domain 2) []. The two cysteine residues form a disulphide bridge.; PDB: 3L5H_A 1P9M_A 1I1R_A 2D9Q_B.
Probab=71.76 E-value=17 Score=29.56 Aligned_cols=61 Identities=20% Similarity=0.362 Sum_probs=40.1
Q ss_pred CCCCCCcEEEEEEEee-----cCCCeeEEEEcCccCCCCceeeec--ccEEEeCCCCCCCCeEEEEEE
Q psy12060 410 APKAGDKVRLECVAFG-----YPVPSYNWTRRGSPLPRNAYFENF--NRILTIPNVKVEDQGEYICRA 470 (978)
Q Consensus 410 ~v~~G~~~~l~C~~~g-----~p~~~v~W~~~~~~l~~~~~~~~~--~~~L~i~~~~~~d~G~Y~C~a 470 (978)
.+..|++++..|.... .....|.|..++..++...+.... .+.+++.+.....+-.|.|..
T Consensus 14 vv~lGS~vtasC~l~~~c~~~~~a~~I~Wkln~~~iP~~qy~~in~~~SsVT~~~~~~~~~~L~cC~l 81 (89)
T PF06328_consen 14 VVSLGSNVTASCVLKQNCSHSVNASQIVWKLNGEKIPGSQYRVINDTVSSVTLPNLNPTGATLFCCKL 81 (89)
T ss_dssp EEETTS-EEEEEEE-CCCHCT-STTCEEEECSSCESTCGCEEEESTTEEEEEESS--SSEEEEEEEEE
T ss_pred EEeCCCCEEEEEEEECCCCCCcccceEEEEECCEECChhHcceeCCeEEEEEEccCCCCCceEEEEEE
Confidence 4568999999999862 245589999999988876654333 356777777665555677764
No 495
>PF03921 ICAM_N: Intercellular adhesion molecule (ICAM), N-terminal domain; InterPro: IPR013768 Intercellular adhesion molecules (ICAMs) and vascular cell adhesion molecule-1 (VCAM-1) are part of the immunoglobulin superfamily. They are important in inflammation, immune responses and in intracellular signalling events []. The ICAM family consists of five members, designated ICAM-1 to ICAM-5. They are known to bind to leucocyte integrins CD11/CD18 during inflammation and in immune responses. In addition, ICAMs may exist in soluble forms in human plasma, due to activation and proteolysis mechanisms at cell surfaces. ICAM-1 (CD54) contains five Ig-like domains. It is expressed on leucocytes, endothelial and epithelial cells, and is upregulated in response to bacterial invasion. The protein is a ligand for lymphocyte-function associated (LFA) antigens and also a receptor for CD11a,b/CD18, fibrinogen, human rhinovirus and Plasmodium falciparum-infected erythrocytes. ICAM-1 binding sites for CD11a/CD18 and its other binding partners are located in the first domain and are overlapping. ICAM-1 domain 2 seems to play an important role in maintaining the conformation of domain 1 and particularly the structural integrity of the LFA-1 ligand-binding site []. The 3-dimensional atomic structure of the tandem N-terminal Ig-like domains (D1 and D2) of ICAM-1 has been determined to 2.2A resolution and fitted into a cryoelectron microscopy reconstruction of a rhinovirus-ICAM-1 complex []. Extensive charge interactions between ICAM-1 and human rhinovirusesare largely conserved in major and minor receptor groups of rhinoviruses. The interaction of ICAMs with LFA-1 is mediated by a divalent cation bound to the insertion (I)-domain on the alpha chain of LFA-1 and the carboxyl group of a conserved glutamic acid residue on ICAMs. ICAM-2 (CD102) has two Ig-like domains. It is expressed on endothelial cells, leucocytes and platelets, and binds to CD11a'b/CD18. The protein is refractory to proinflammatory cytokines, and plays an important role in the adhesion of leucocytes to the uninduced endothelium []. ICAM-3 (CD50) contains five Ig-like domains and binds to leucocyte integrins CD11a'd/CD18. The protein plays an important role in the immune response and perhaps in signal transduction []. ICAM-4 (LW blood group Ag) is red blood cell (RBC) specific and binds to CD11a'b/CD18. It is associated with the RBC Rh antigens and could be important in retaining immature red cells in the bone marrow, or in the uptake of senescent cells into the spleen []. ICAM-5 (telencephalin) has nine Ig-like domains and is confined to the telencephalon of the brain. The role of this CD11a/CD18 binding molecule is not yet known []. VCAM-1 was first described as a cytokine-inducible endothelial adhesion molecule. It can bind to leucocyte integrin VL-4 (very late antigen-4) to recruit leucocytes to sites of inflammation []. The predominant form of VCAM-1 in vivo has an N-terminal extracellular region comprising seven Ig-like domains []. A conserved integrin-binding motif has been identified in domains 1 and 4, variants of which are present in the N-terminal domain of all members of the integrin-binding subgroup of the immunoglobulin superfamily. The structure of a VLA-4-binding fragment comprising the first two domains of VCAM-1 has been determined to 1.8A resolution. The integrin-binding motif is exposed and forms the N-terminal region of the loop between beta-strands C and D of domain 1 []. VCAM-1 domains 1 and 2 are structurally similar to ICAM-1 and ICAM-2 []. This entry represents the N-terminal domain of ICAM proteins such as ICAM-2, ICAM-3 and ICAM-4.; PDB: 3BN3_B 1T0P_B 1ZXQ_A 3TCX_A 1MQ8_A 1Z7Z_I 1IC1_A 1IAM_A.
Probab=70.20 E-value=59 Score=26.58 Aligned_cols=77 Identities=16% Similarity=0.219 Sum_probs=44.6
Q ss_pred cceeecCCCeEEEEEeeccCCCCeeEEeeCCEEecCCCcEEEeecC---cEEEccccCCCCEEEEEEEEeCCceeeeeEE
Q psy12060 596 SETYAGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENG---NLLISPVSRDDSGIYSCTATNVHGMDESKGR 672 (978)
Q Consensus 596 ~~~~~~~g~~~~l~C~~~~~p~~~i~W~~~g~~~~~~~~~~~~~~~---~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~ 672 (978)
....+..|+++.+.|...-..+..+.|.-.= .+....... .+.+.+++. | ..-.|.+.-.......++.
T Consensus 11 ~~~vV~~G~Sv~VNCStsC~~p~~~GLET~L------~k~~~~~g~~W~~f~LsnV~~-d-s~~~C~~~C~g~Q~~~~~~ 82 (91)
T PF03921_consen 11 EEPVVPPGGSVWVNCSTSCPQPEKIGLETSL------SKTELDSGPQWKAFQLSNVTE-D-SSPLCFFNCSGEQSSASAN 82 (91)
T ss_dssp SEEEEETTEEEEEEEEESSSS-SEEEEESSS------EEEEEEEETTEEEEEEEEE-S-C-EEEEEEEEETTEEEEEEEE
T ss_pred CccEECCCCCEEEEEcCCCCCCCcceEEEec------CCcccCCCCcEEEEEEEcccc-C-CeEEEEEEcCCeEEEeEEe
Confidence 3455889999999999754433355554210 111111111 277888886 3 5778999865445566778
Q ss_pred EEEEeCCc
Q psy12060 673 LIVLHGPS 680 (978)
Q Consensus 673 l~v~~~p~ 680 (978)
|.|..+|.
T Consensus 83 ItVY~~Pe 90 (91)
T PF03921_consen 83 ITVYKPPE 90 (91)
T ss_dssp EEEEB--S
T ss_pred eEEeCCCC
Confidence 88877664
No 496
>PHA03281 envelope glycoprotein E; Provisional
Probab=65.43 E-value=1e+02 Score=33.90 Aligned_cols=120 Identities=18% Similarity=0.160 Sum_probs=0.0
Q ss_pred eCCcEEEeeeeeecceeeEEEEEeecccccccCCceeEEEccCCCccccccCCCCCCCCCCCC----------CCCCcEE
Q psy12060 349 YDGALYFSALEQIDAGNYSCNVQSKVSDTGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPEAP----------KAGDKVR 418 (978)
Q Consensus 349 ~~~~L~i~~~~~~d~G~Y~C~~~n~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~v----------~~G~~~~ 418 (978)
..+.|.|.+++.+++|.|+-......| ......+-|.|...+. ..+..|...|......+ .+|+++.
T Consensus 296 ~~~vL~I~nAT~~naGVYtly~rg~~G--~s~~svfLVtVkg~~~-~rip~p~Vtpk~hga~F~vknYhShVF~pGDTFs 372 (642)
T PHA03281 296 EPGVLKFEHMEAHHAGVYIWNLQGSDG--ENMYATFLVKLKGDEE-NHIDLPAVTPKPKGAEFHMWHYHSHVFSVGDTFS 372 (642)
T ss_pred cCCeeEEEecccccceeEEEEecCCCC--cceeEEEEEEecCCcc-cCCCCCCccccccCceEEEeccceeEecCCCeeE
Q ss_pred EEEEEeec--CCC---eeEEEEcCccC-----------------------------------------------------
Q psy12060 419 LECVAFGY--PVP---SYNWTRRGSPL----------------------------------------------------- 440 (978)
Q Consensus 419 l~C~~~g~--p~~---~v~W~~~~~~l----------------------------------------------------- 440 (978)
|.-..... ..+ .|.|++-...-
T Consensus 373 l~v~L~s~ihD~pFsleI~Wyy~p~~p~C~~mrIYEtCIFHP~APeCL~Peda~CsFASP~ra~~Va~R~Y~nCs~~~~w 452 (642)
T PHA03281 373 LAMHLQYKIHDAPFDLLLEWLYVPIDPTCQPMRLYSACLYHENAPQCLSHENPECTFASPHIAQRVANTVYQNCEHADNY 452 (642)
T ss_pred EEEEEeeeccCCCceeEEEEEEecCCCCCceEEeecccccCCCchhhcCcCCCCcccccchhHHHHHHHHhcCCCCCCCC
Q ss_pred ------------CCCceeeecccEEEeCCCCCCCCeEEEEEEE
Q psy12060 441 ------------PRNAYFENFNRILTIPNVKVEDQGEYICRAS 471 (978)
Q Consensus 441 ------------~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~ 471 (978)
...-.....+..|.+.++..+++|.|.|++.
T Consensus 453 p~~C~sis~m~p~~gL~~~~n~vdL~F~nApasaSGLYVfVl~ 495 (642)
T PHA03281 453 TADCLAISHMEPGFGLEIHDGGSALKFVDAAESLSGLYVFIIH 495 (642)
T ss_pred CCCCCcccccCccccccccCCCcceEeccCCcccCceEEEEEE
No 497
>cd03516 Link_domain_CD44_like This domain is a hyaluronan (HA)-binding domain. It is found in CD44 receptor and mediates adhesive interactions during inflammatory leukocyte homing and tumor metastasis. It also plays an important role in arteriogenesis. The functional HA-binding domain of CD44 is an extended domain comprised of a single link module flanked with N-and C- extensions. These extensions are essential for folding and for functional activity. This group also contains the cell surface retention sequence (CRS) binding protein-1 (CRSBP-1) and lymph vessel endothelial receptor-1 (LYVE-1). CRSBP-1 is a cell surface binding protein for the CRS motif of PDGF-BB (platelet-derived growth factor-BB) and is responsible for the cell surface retention of PDGF-BB in SSV-transformed cells. CRSBP-1 may play a role in autocrine regulation of cell growth mediated by CRS containing growth regulators. LYVE-1 is preferentially expressed on the lymphatic endothelium and is used as a molecular marke
Probab=65.01 E-value=4.1 Score=35.87 Aligned_cols=22 Identities=27% Similarity=0.326 Sum_probs=20.2
Q ss_pred CCCHHHHHHHhhhcCCeeeeeC
Q psy12060 48 LKTRNDAKLNCKSLDSDLANVN 69 (978)
Q Consensus 48 ~~~~~~A~~~C~~~~~~L~~i~ 69 (978)
..+|.||++.|+.+|+.||+..
T Consensus 18 ~lnf~eA~~aC~~~ga~lAs~~ 39 (144)
T cd03516 18 SLNFTEAKEACRALGLTLASKA 39 (144)
T ss_pred cCCHHHHHHHHHHcCCeeCCHH
Confidence 4799999999999999999984
No 498
>PHA03283 envelope glycoprotein E; Provisional
Probab=60.08 E-value=39 Score=37.00 Aligned_cols=75 Identities=15% Similarity=0.229 Sum_probs=50.5
Q ss_pred ccEEEeCCCCCCCCeEEEEEEEeCCCceEEEEEEEEEeeceee---------ccC------------CcccccCCCceeE
Q psy12060 450 NRILTIPNVKVEDQGEYICRASNDRSALESSVTISIQAEPNFT---------IPL------------TDKHMDNQADLTW 508 (978)
Q Consensus 450 ~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~p~~~---------~~~------------~~~~~~~g~~~~l 508 (978)
.+.|.|.+++.+++|.|+-..++..+.....+.|.|..++.-. +.+ .......|+++.+
T Consensus 133 ~~~l~I~~at~~~aGVYtly~r~d~~~~~~vflvtVk~~~~~~~~~Pp~~~pv~P~~h~a~f~v~nYhS~vf~~GDtf~l 212 (542)
T PHA03283 133 RSVLQIQRATPNIAGVYTLHVSSDGMMKHSVFFVTVKKPPKQPQTPPAPLVPQVPARHHTDFHVRGYHSRVYSPGDSFDL 212 (542)
T ss_pred CCeeEEEecccccCeEEEEEecCCCceEEEEEEEEecCCCcCCCCCCCCccccCCccCCceEEEecceeEEecCCCceeE
Confidence 4679999999999999999999887755666777787622111 001 1122357888888
Q ss_pred EEEeecC---C--CCeeEEeE
Q psy12060 509 TCEAFGV---P--DVTYSWFR 524 (978)
Q Consensus 509 ~C~~~~~---p--~~~i~W~~ 524 (978)
.-..... + ..+|.|+.
T Consensus 213 si~l~s~~~d~~fs~~i~Wyy 233 (542)
T PHA03283 213 SVHLESDIGDPSFSATIDWYY 233 (542)
T ss_pred eEEEeeccCCCCceEEEEEEE
Confidence 6655422 1 46788886
No 499
>PF03921 ICAM_N: Intercellular adhesion molecule (ICAM), N-terminal domain; InterPro: IPR013768 Intercellular adhesion molecules (ICAMs) and vascular cell adhesion molecule-1 (VCAM-1) are part of the immunoglobulin superfamily. They are important in inflammation, immune responses and in intracellular signalling events []. The ICAM family consists of five members, designated ICAM-1 to ICAM-5. They are known to bind to leucocyte integrins CD11/CD18 during inflammation and in immune responses. In addition, ICAMs may exist in soluble forms in human plasma, due to activation and proteolysis mechanisms at cell surfaces. ICAM-1 (CD54) contains five Ig-like domains. It is expressed on leucocytes, endothelial and epithelial cells, and is upregulated in response to bacterial invasion. The protein is a ligand for lymphocyte-function associated (LFA) antigens and also a receptor for CD11a,b/CD18, fibrinogen, human rhinovirus and Plasmodium falciparum-infected erythrocytes. ICAM-1 binding sites for CD11a/CD18 and its other binding partners are located in the first domain and are overlapping. ICAM-1 domain 2 seems to play an important role in maintaining the conformation of domain 1 and particularly the structural integrity of the LFA-1 ligand-binding site []. The 3-dimensional atomic structure of the tandem N-terminal Ig-like domains (D1 and D2) of ICAM-1 has been determined to 2.2A resolution and fitted into a cryoelectron microscopy reconstruction of a rhinovirus-ICAM-1 complex []. Extensive charge interactions between ICAM-1 and human rhinovirusesare largely conserved in major and minor receptor groups of rhinoviruses. The interaction of ICAMs with LFA-1 is mediated by a divalent cation bound to the insertion (I)-domain on the alpha chain of LFA-1 and the carboxyl group of a conserved glutamic acid residue on ICAMs. ICAM-2 (CD102) has two Ig-like domains. It is expressed on endothelial cells, leucocytes and platelets, and binds to CD11a'b/CD18. The protein is refractory to proinflammatory cytokines, and plays an important role in the adhesion of leucocytes to the uninduced endothelium []. ICAM-3 (CD50) contains five Ig-like domains and binds to leucocyte integrins CD11a'd/CD18. The protein plays an important role in the immune response and perhaps in signal transduction []. ICAM-4 (LW blood group Ag) is red blood cell (RBC) specific and binds to CD11a'b/CD18. It is associated with the RBC Rh antigens and could be important in retaining immature red cells in the bone marrow, or in the uptake of senescent cells into the spleen []. ICAM-5 (telencephalin) has nine Ig-like domains and is confined to the telencephalon of the brain. The role of this CD11a/CD18 binding molecule is not yet known []. VCAM-1 was first described as a cytokine-inducible endothelial adhesion molecule. It can bind to leucocyte integrin VL-4 (very late antigen-4) to recruit leucocytes to sites of inflammation []. The predominant form of VCAM-1 in vivo has an N-terminal extracellular region comprising seven Ig-like domains []. A conserved integrin-binding motif has been identified in domains 1 and 4, variants of which are present in the N-terminal domain of all members of the integrin-binding subgroup of the immunoglobulin superfamily. The structure of a VLA-4-binding fragment comprising the first two domains of VCAM-1 has been determined to 1.8A resolution. The integrin-binding motif is exposed and forms the N-terminal region of the loop between beta-strands C and D of domain 1 []. VCAM-1 domains 1 and 2 are structurally similar to ICAM-1 and ICAM-2 []. This entry represents the N-terminal domain of ICAM proteins such as ICAM-2, ICAM-3 and ICAM-4.; PDB: 3BN3_B 1T0P_B 1ZXQ_A 3TCX_A 1MQ8_A 1Z7Z_I 1IC1_A 1IAM_A.
Probab=58.81 E-value=62 Score=26.43 Aligned_cols=79 Identities=11% Similarity=0.201 Sum_probs=45.3
Q ss_pred CCceEEEccccEEEEEEeeecCCcCeEEEEeeC--CEEccccccccccCCeeecCCceEEEeccCCCCCEEEEEEEEcCC
Q psy12060 686 PPKITIAAHRNLQLRCSAHTEELLDVAYIWTHN--GVRIGNMDLNELETPNINIDGGLLEITNASFADAGEYECVVKSTV 763 (978)
Q Consensus 686 ~~~~~~~~g~~~~l~C~~~~~p~~~~~~~W~~~--g~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~c~a~n~~ 763 (978)
|....+..|+++.+.|...-..+..+ -|.-. ...+.. ...-..+.+.+++. ...-.|.+.-..
T Consensus 10 P~~~vV~~G~Sv~VNCStsC~~p~~~--GLET~L~k~~~~~-----------g~~W~~f~LsnV~~--ds~~~C~~~C~g 74 (91)
T PF03921_consen 10 PEEPVVPPGGSVWVNCSTSCPQPEKI--GLETSLSKTELDS-----------GPQWKAFQLSNVTE--DSSPLCFFNCSG 74 (91)
T ss_dssp SSEEEEETTEEEEEEEEESSSS-SEE--EEESSSEEEEEEE-----------ETTEEEEEEEEE-S--CEEEEEEEEETT
T ss_pred CCccEECCCCCEEEEEcCCCCCCCcc--eEEEecCCcccCC-----------CCcEEEEEEEcccc--CCeEEEEEEcCC
Confidence 55678899999999999864432212 22210 011100 01113567777765 457789987654
Q ss_pred CceeeeEEEEEcCCCC
Q psy12060 764 GKISTKTTVIVEGPPG 779 (978)
Q Consensus 764 G~~s~~~~l~v~~~P~ 779 (978)
.+..+++.++|..+|.
T Consensus 75 ~Q~~~~~~ItVY~~Pe 90 (91)
T PF03921_consen 75 EQSSASANITVYKPPE 90 (91)
T ss_dssp EEEEEEEEEEEEB--S
T ss_pred eEEEeEEeeEEeCCCC
Confidence 4567788889888774
No 500
>PHA03052 Hypothetical protein; Provisional
Probab=58.15 E-value=17 Score=27.15 Aligned_cols=35 Identities=23% Similarity=0.350 Sum_probs=27.4
Q ss_pred CcccccCCCceeEEEEee-c--CCCCeeEEeECCEECC
Q psy12060 496 TDKHMDNQADLTWTCEAF-G--VPDVTYSWFRNGELLN 530 (978)
Q Consensus 496 ~~~~~~~g~~~~l~C~~~-~--~p~~~i~W~~~g~~~~ 530 (978)
....+..|..++|.|.+. | ...+.+.|.-|+..+.
T Consensus 5 ~~i~~slGs~ltI~Ckv~lg~g~~~a~V~W~~N~~~~e 42 (69)
T PHA03052 5 EGIVTSLGSNLTITCKVSLRPPTTDADVFWISNGMYYE 42 (69)
T ss_pred ccEEEEccCCceEeEEEEecCCCcceEEEEEeCCcEEe
Confidence 445678899999999986 3 2367899999988773
Done!