RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy12060
(978 letters)
>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30,
N-terminal eight IG domains...; immunoglobulin domain;
HET: NAG NDG; 4.19A {Drosophila melanogaster}
Length = 816
Score = 458 bits (1180), Expect = e-148
Identities = 152/723 (21%), Positives = 249/723 (34%), Gaps = 77/723 (10%)
Query: 183 PDKIPRGPYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANL 242
PD +GP F+K+PT+ + + + C A G P P W + D
Sbjct: 32 PDADQKGPVFLKEPTNRIDFSNS----TGAEIECKASGNPMPEIIWIRSDGT-------A 80
Query: 243 IDPLSDKRFTLSGGNLIIN-----DPRQVEDRGSYHCKASNKFGSIISESVQLAFGFIGE 297
+ + R S G L+ D RQ Y C A N+FGSIIS V +
Sbjct: 81 VGDVPGLRQISSDGKLVFPPFRAEDYRQEVHAQVYACLARNQFGSIISRDVHVRAVVAQY 140
Query: 298 FNLKRAPEIGNQNWGKAMFCDPPTNY--PGVNYYWARDYFPNFV---EEDKRVFVSYDGA 352
+ E + + C P+ W D N+ E D + V G
Sbjct: 141 YEADVNKEHVIRGNSAVIKCLIPSFVADFVEVVSWHTDEEENYFPGAEYDGKYLVLPSGE 200
Query: 353 LYFSALEQIDA-GNYSCNVQSKVSDTGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPEAP 411
L+ + D +Y C + +++ R V + + K +
Sbjct: 201 LHIREVGPEDGYKSYQCRTKHRLTGETRLSATKGRLVITEPISSAVPKVVSLAKFDMKTY 260
Query: 412 KAGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAY------FENFNRILTIPNVKVEDQGE 465
+ L C A GYPVP + W + R + + L I + VED G+
Sbjct: 261 SGSSTMALLCPAQGYPVPVFRWYKFIEGTTRKQAVVLNDRVKQVSGTLIIKDAVVEDSGK 320
Query: 466 YICRASNDRSALESSVTISIQAEPNFTIPLTDKHMDNQADLTWTCEAFGVPDVTYSWFRN 525
Y+C +N +++ A + I + +D +TC+ G P T SW ++
Sbjct: 321 YLCVVNNSVGGESVETVLTVTAPLSAKIDPPTQTVDFGRPAVFTCQYTGNPIKTVSWMKD 380
Query: 526 GELLNSETLPLEDQDRYFIQDNVLTIRYLNPERDPAMYQCRAKNQLKTRYSSAQLRVLTL 585
G+ + ++VL I + E D MYQC +N ++ +SA+L++
Sbjct: 381 GKAIGH-------------SESVLRIESVKKE-DKGMYQCFVRNDRESAEASAELKLGGR 426
Query: 586 KPSFKKRPLESETYAGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFE------ 639
R E G +V + C P P+ W+ DG I + R ++ +
Sbjct: 427 FDPPVIRQAFQEETMEPGPSVFLKCVAGGNPTPEISWELDGKKIANNDRYQVGQYVTVNG 486
Query: 640 --NGNLLISPVSRDDSGIYSCTATNVHGMDESKGRLIVLHGPSYYEQLPPKITIAAHRNL 697
L I+ V +D G+Y C A + G+ E +L V P Y + K I A L
Sbjct: 487 DVVSYLNITSVHANDGGLYKCIAKSKVGVAEHSAKLNVYGLP--YIRQMEKKAIVAGETL 544
Query: 698 QLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINI-DGGLLEITNASFA-DAGEY 755
+ C + + +W + + + G L I N D Y
Sbjct: 545 IVTCPVAGYPIDSI--VWERDNRAL-------PINRKQKVFPNGTLIIENVERNSDQATY 595
Query: 756 ECVVKSTVGKISTKT-TVIVEGPPG-LPGGVQVVEVHK-TSATIQWT-DGATNGRPITHY 811
CV K+ G + + V V P +P + T+ + G I
Sbjct: 596 TCVAKNQEGYSARGSLEVQVMVLPRIIPFAFEEGPAQVGQYLTLHCSVPGGDLPLNIDWT 655
Query: 812 KIIARTNWNSTWFNVSEHVIGKEVDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEP 871
+ + + V R +IE V F A N G+ +
Sbjct: 656 L-------DGQAISEDLGITTSRVGRRGS--VLTIEAV-EASHAGNFTCHARNLAGHQQF 705
Query: 872 SSP 874
++P
Sbjct: 706 TTP 708
Score = 314 bits (807), Expect = 8e-94
Identities = 134/614 (21%), Positives = 210/614 (34%), Gaps = 67/614 (10%)
Query: 190 PYFIKQPTDVVFDLSKRSIL---NDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPL 246
P P V + + L C A GYP P + W+K + L
Sbjct: 241 PISSAVPKVVSLAKFDMKTYSGSSTMALLCPAQGYPVPVFRWYKFI---EGTTRKQAVVL 297
Query: 247 SDKRFTLSGGNLIINDPRQVEDRGSYHCKASNKFGSIISE---SVQLAFGFIGEFNLKRA 303
+D R G LII D VED G Y C +N G E +V +
Sbjct: 298 ND-RVKQVSGTLIIKDA-VVEDSGKYLCVVNNSVGGESVETVLTVTAPLSAKID------ 349
Query: 304 PEIGNQNWGK-AMF-CDPPTNYPGVNYYWARDYFPNFVEEDKRVFVSYDGALYFSALEQI 361
P ++G+ A+F C T P W +D K + S + L ++++
Sbjct: 350 PPTQTVDFGRPAVFTCQY-TGNPIKTVSWMKD--------GKAIGHS-ESVLRIESVKKE 399
Query: 362 DAGNYSCNVQSKVSDTGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPEAP-KAGDKVRLE 420
D G Y C V++ LK+ + P + F E + G V L+
Sbjct: 400 DKGMYQCFVRNDR---ESAEASAELKLGGRFD------PPVIRQAFQEETMEPGPSVFLK 450
Query: 421 CVAFGYPVPSYNWTRRGSPLPRNAYFE---------NFNRILTIPNVKVEDQGEYICRAS 471
CVA G P P +W G + N ++ + L I +V D G Y C A
Sbjct: 451 CVAGGNPTPEISWELDGKKIANNDRYQVGQYVTVNGDVVSYLNITSVHANDGGLYKCIAK 510
Query: 472 NDRSALESSVTISIQAEPNFTIPLTDKHMDNQADLTWTCEAFGVPDVTYSWFRNGELLNS 531
+ E S +++ P + + L TC G P + W R+ L
Sbjct: 511 SKVGVAEHSAKLNVYGLPYIRQMEKKAIVAGE-TLIVTCPVAGYPIDSIVWERDNRALP- 568
Query: 532 ETLPLEDQDRYFIQDNVLTIRYLNPERDPAMYQCRAKNQL-KTRYSSAQLRVLTLKPSFK 590
++ + + L I + D A Y C AKNQ + S +++V+ P
Sbjct: 569 -----INRKQKVFPNGTLIIENVERNSDQATYTCVAKNQEGYSARGSLEVQVMV-LPRII 622
Query: 591 KRPLESETYAGEGGNVTIFCNPEAAPKP-KFVWKKDGNIIGSGGRRKI----FENGNLLI 645
E E A G +T+ C+ P W DG I L I
Sbjct: 623 PFAFE-EGPAQVGQYLTLHCSVPGGDLPLNIDWTLDGQAISEDLGITTSRVGRRGSVLTI 681
Query: 646 SPVSRDDSGIYSCTATNVHGMDESKGRLIVLHGPSYYEQLPPKITIAAHRNLQLRCSAHT 705
V +G ++C A N+ G + L V P + + P A + ++ C A
Sbjct: 682 EAVEASHAGNFTCHARNLAGHQQFTTPLNVYVPPRWILE-PTDKAFAQGSDAKVECKADG 740
Query: 706 EELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEITNASFADAGEYECVVKSTVGK 765
V W + ++ NI ++ G L + N + G Y C + +G
Sbjct: 741 FPKPQV--TWKKAVGDTPGEYKDLKKSDNIRVEEGTLHVDNIQKTNEGYYLCEAINGIGS 798
Query: 766 ISTKTT-VIVEGPP 778
+ + V+
Sbjct: 799 GLSAVIMISVQAHH 812
Score = 244 bits (624), Expect = 2e-68
Identities = 98/525 (18%), Positives = 160/525 (30%), Gaps = 84/525 (16%)
Query: 190 PYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDK 249
P D + +C G P + W K+ K
Sbjct: 344 LSAKIDPPTQTVDFGR-----PAVFTCQYTGNPIKTVSWMKDG----------------K 382
Query: 250 RFTLSGGNLIINDPRQVEDRGSYHCKASNKFGSIIS------ESVQLAFGFIGEFNLKRA 303
S L I + ED+G Y C N S + F +
Sbjct: 383 AIGHSESVLRIESV-KKEDKGMYQCFVRNDRESAEASAELKLGGRFDPPVIRQAFQEETM 441
Query: 304 PEIGNQNWGKA--MFCDPPTNYPGVNYYWARDYFPNFVEEDKRVFVSYD--------GAL 353
G + + C P W D + + R V L
Sbjct: 442 EP------GPSVFLKC-VAGGNPTPEISWELDGKK--IANNDRYQVGQYVTVNGDVVSYL 492
Query: 354 YFSALEQIDAGNYSC---NVQSKVSDTGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPEA 410
+++ D G Y C + + + L V+ +Q++ +A
Sbjct: 493 NITSVHANDGGLYKCIAKSKVGVAEHSAK------LNVYGLPYIRQME---------KKA 537
Query: 411 PKAGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYFENF-NRILTIPNV-KVEDQGEYIC 468
AG+ + + C GYP+ S W R LP N + F N L I NV + DQ Y C
Sbjct: 538 IVAGETLIVTCPVAGYPIDSIVWERDNRALPINRKQKVFPNGTLIIENVERNSDQATYTC 597
Query: 469 RASNDR-SALESSVTISIQAEPNF-TIPLTDKHMDNQADLTWTCEAFGVP-DVTYSWFRN 525
A N + S+ + + P + LT C G + W +
Sbjct: 598 VAKNQEGYSARGSLEVQVMVLPRIIPFAFEEGPAQVGQYLTLHCSVPGGDLPLNIDWTLD 657
Query: 526 GELLNSETLPLEDQDRYFIQDN-VLTIRYLNPERDPAMYQCRAKNQLKTRYSSAQLRVLT 584
G+ ++ + L + VLTI + + C A+N + + L V
Sbjct: 658 GQAISED---LGITTSRVGRRGSVLTIEAVEAS-HAGNFTCHARNLAGHQQFTTPLNVYV 713
Query: 585 LKPSFKKRPLESETYAGEGGNVTIFCNPEAAPKPKFVWKKDGNII------GSGGRRKIF 638
P + P ++ +G + + C + PKP+ WKK
Sbjct: 714 -PPRWILEP--TDKAFAQGSDAKVECKADGFPKPQVTWKKAVGDTPGEYKDLKKSDNIRV 770
Query: 639 ENGNLLISPVSRDDSGIYSCTATNVHGMDESKGRLIVLHGPSYYE 683
E G L + + + + G Y C A N G S +I + ++
Sbjct: 771 EEGTLHVDNIQKTNEGYYLCEAINGIGSGLSAVIMISVQAHHHHH 815
Score = 241 bits (616), Expect = 2e-67
Identities = 106/599 (17%), Positives = 175/599 (29%), Gaps = 91/599 (15%)
Query: 265 QVEDRGSYHCKASNKFGSI-----ISESVQLAFGFIGEFNLKRAPEIGNQNWGKAMFCDP 319
+++ + A GS ++ Q F+ E + G + C
Sbjct: 7 RLKWLMLFAAVALIACGSQTLAANPPDADQKGPVFLKEPTNRIDFSNST---GAEIEC-K 62
Query: 320 PTNYPGVNYYWARDYFPNFVEEDKRVFVSYDGALYFSALE------QIDAGNYSCNVQSK 373
+ P W R + +S DG L F ++ A Y+C +++
Sbjct: 63 ASGNPMPEIIWIRSDGTAVGDVPGLRQISSDGKLVFPPFRAEDYRQEVHAQVYACLARNQ 122
Query: 374 VSDTGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPEAPK-----AGDKVRLECVA---FG 425
S ++ + + G+ ++C+
Sbjct: 123 FGSI-------------ISRDVHVRAV--VAQYYEADVNKEHVIRGNSAVIKCLIPSFVA 167
Query: 426 YPVPSYNWTRRGSPLPRNAYFENFNRI-------LTIPNVKVED-QGEYICRASN---DR 474
V +W + + L I V ED Y CR +
Sbjct: 168 DFVEVVSWHTDEEENYFPGAEYD-GKYLVLPSGELHIREVGPEDGYKSYQCRTKHRLTGE 226
Query: 475 SALESSVTISIQAEPNFTI--------PLTDKHMDNQADLTWTCEAFGVPDVTYSWFRNG 526
+ L ++ + EP + K + + C A G P + W++
Sbjct: 227 TRLSATKGRLVITEPISSAVPKVVSLAKFDMKTYSGSSTMALLCPAQGYPVPVFRWYKFI 286
Query: 527 ELLNSETLPLEDQDRYFIQDNVLTIRYLNPERDPAMYQCRAKNQLKTRYSSAQLRVLTLK 586
E + + DR L I+ E D Y C N + L V
Sbjct: 287 EGTTRKQ-AVVLNDRVKQVSGTLIIKDAVVE-DSGKYLCVVNNSVGGESVETVLTVTA-P 343
Query: 587 PSFKKRPLESETYAGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGNLLIS 646
S K P G C P W KDG IG L I
Sbjct: 344 LSAKIDP--PTQTVDFGRPAVFTCQYTGNPIKTVSWMKDGKAIGHS-------ESVLRIE 394
Query: 647 PVSRDDSGIYSCTATNVHGMDESKGRLIVL--HGPSYYEQLPPKITIAAHRNLQLRCSAH 704
V ++D G+Y C N E+ L + P Q + T+ ++ L+C A
Sbjct: 395 SVKKEDKGMYQCFVRNDRESAEASAELKLGGRFDPPVIRQAFQEETMEPGPSVFLKCVAG 454
Query: 705 TEELLDVAYIWTHNGVRIGNMD-LNELETPNINIDG-GLLEITNASFADAGEYECVVKST 762
++ W +G +I N D + +N D L IT+ D G Y+C+ KS
Sbjct: 455 GNPTPEI--SWELDGKKIANNDRYQVGQYVTVNGDVVSYLNITSVHANDGGLYKCIAKSK 512
Query: 763 VGKISTKTTVIVEGPPGL--PGGVQVVE----------VHKTSATIQWTDGATNGRPIT 809
VG + V G P + +V +I W + R +
Sbjct: 513 VGVAEHSAKLNVYGLPYIRQMEKKAIVAGETLIVTCPVAGYPIDSIVWE---RDNRALP 568
Score = 206 bits (525), Expect = 1e-55
Identities = 66/398 (16%), Positives = 112/398 (28%), Gaps = 52/398 (13%)
Query: 453 LTIPNVKVEDQGEYICRASND--RSALESSVTISIQAEPNFTI-PLTDKHMDNQADLTWT 509
+ +PN +++ + A L ++ + Q P F P N
Sbjct: 1 MNMPNERLKWLMLFAAVALIACGSQTLAANPPDADQKGPVFLKEPTNRIDFSNSTGAEIE 60
Query: 510 CEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQDNVLTIRYLNPE-----RDPAMYQ 564
C+A G P W R+ + + R D L E +Y
Sbjct: 61 CKASGNPMPEIIWIRS----DGTAVGDVPGLRQISSDGKLVFPPFRAEDYRQEVHAQVYA 116
Query: 565 CRAKNQLKTRYSSAQLRVLTLKPSFKKRPLESETYAGEGGNVTIFCNPEAA---PKPKFV 621
C A+NQ + S + ++ ++ + G + I C +
Sbjct: 117 CLARNQFGSIISRDVHVRAVVAQYYEADV--NKEHVIRGNSAVIKCLIPSFVADFVEVVS 174
Query: 622 WKKDGNIIG-----SGGRRKIFENGNLLISPVSR-DDSGIYSCTATNVHGMDESKGRLIV 675
W D G+ + +G L I V D Y C + +
Sbjct: 175 WHTDEEENYFPGAEYDGKYLVLPSGELHIREVGPEDGYKSYQCRTKHRLTGETRLSATKG 234
Query: 676 L--HGPSYYEQLPPKI--------TIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNM 725
+P + T + + L C A + W
Sbjct: 235 RLVITEPISSAVPKVVSLAKFDMKTYSGSSTMALLCPAQGYPVPVF--RWYKFIEGT-TR 291
Query: 726 DLNELETPNINIDGGLLEITNASFADAGEYECVVKSTVGKISTKTTVIVEGPPGLPGGVQ 785
+ + G L I +A D+G+Y CVV ++VG S +T + V P
Sbjct: 292 KQAVVLNDRVKQVSGTLIIKDAVVEDSGKYLCVVNNSVGGESVETVLTVTAPLSAKIDPP 351
Query: 786 VVEVHKTS-------------ATIQWTDGATNGRPITH 810
V T+ W +G+ I H
Sbjct: 352 TQTVDFGRPAVFTCQYTGNPIKTVSWM---KDGKAIGH 386
>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL
structural protein; 3.30A {Oryctolagus cuniculus}
Length = 570
Score = 418 bits (1076), Expect = e-135
Identities = 129/611 (21%), Positives = 215/611 (35%), Gaps = 74/611 (12%)
Query: 190 PYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDK 249
PYFI+ V + ITL C G P W+KE +
Sbjct: 6 PYFIEPLEHVEAAIG-----EPITLQCKVDGTPEIRIAWYKEH--------TKLRSAPAY 52
Query: 250 RFTLSG--GNLIINDPRQVEDRGSYHCKASNKFGSIISESVQLAFGFIGEFNLKRAPEIG 307
+ +L+IN D G Y CKA N G++ S +V + + R +
Sbjct: 53 KMQFKNNVASLVINKV-DHSDVGEYTCKAENSVGAVASSAVLVIKERKLPPSFARKLKDV 111
Query: 308 NQNWGKAMF--CDPPTNYPGVNYYWARDYFPNFVEEDKRVFVSYD-GALYFSALEQIDAG 364
++ G + C + W +D + + + ++ L +Q G
Sbjct: 112 HETLGFPVAFEC-RINGSEPLQVSWYKDGELLKDDANLQTSFIHNVATLQILQTDQSHVG 170
Query: 365 NYSCNVQSKVSDTGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPEAPK-----AGDKVRL 419
Y+C+ + + G L + H P F P G+
Sbjct: 171 QYNCSASNPL---GTASSSAKLTLSEH----------EVPPFFDLKPVSVDLALGESGTF 217
Query: 420 ECVAFGYPVPSYNWTRRGSPLPRN----AYFENFNRILTIPNVKVEDQGEYICRASNDRS 475
+C G W + + LT+ V D G+Y C ASN
Sbjct: 218 KCHVTGTAPIKITWAKDNREIRPGGNYKMTLVENTATLTVLKVTKGDAGQYTCYASNVAG 277
Query: 476 ALESSVTISIQAEPNFTIPLTDKHMDNQ-ADLTWTCEAFGVPDVTYSWFRNGELLNSETL 534
S + +Q P F L + Q + C+ G P++ W+++
Sbjct: 278 KDSCSAQLGVQEPPRFIKKLEPSRIVKQDEHTRYECKIGGSPEIKVLWYKDET------- 330
Query: 535 PLEDQDRYFIQ----DNVLTIRYLNPERDPAMYQCRAKNQLKTRYSSAQLRVLTLKPSFK 590
+++ ++ + VL + L+ E D Y C A N + SS L+V P F+
Sbjct: 331 EIQESSKFRMSFVESVAVLEMYNLSVE-DSGDYTCEAHNAAGSASSSTSLKVKE-PPVFR 388
Query: 591 KRPLESETYAGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGN---LLISP 647
K+P +G +V + C + P + W KD + SG + KI + I
Sbjct: 389 KKP--HPVETLKGADVHLECELQGTPPFQVSWHKDKRELRSGKKYKIMSENFLTSIHILN 446
Query: 648 VSRDDSGIYSCTATNVHGMDESKGRLIVLHGPSYYEQLPPKITIAAHRNLQLRCSAHTEE 707
V D G Y C A+N G D G + + P + ++ I+ +QL+ + E
Sbjct: 447 VDSADIGEYQCKASNDVGSDTCVGSITLKAPPRFVKK-LSDISTVVGEEVQLQATIEGAE 505
Query: 708 LLDVAYIWTHNGVRIGNMDLNELETPNINI----DGGLLEITNASFADAGEYECVVKSTV 763
+ V W + I E+ NI I + L+ + A A+AG+Y C +K+
Sbjct: 506 PISV--AWFKDKGEI------VRESDNIWISYSENIATLQFSRAEPANAGKYTCQIKNEA 557
Query: 764 GKISTKTTVIV 774
G T+ V
Sbjct: 558 GTQECFATLSV 568
Score = 265 bits (679), Expect = 4e-78
Identities = 106/447 (23%), Positives = 165/447 (36%), Gaps = 55/447 (12%)
Query: 404 PKTFPEAPK-----AGDKVRLECVAFGYPVPSYNWTRRGSPLPRNA----YFENFNRILT 454
P F E + G+ + L+C G P W + + L F+N L
Sbjct: 5 PPYFIEPLEHVEAAIGEPITLQCKVDGTPEIRIAWYKEHTKLRSAPAYKMQFKNNVASLV 64
Query: 455 IPNVKVEDQGEYICRASNDRSALESSVTISIQAE---PNFTIPLTDKHMDNQADLTWTCE 511
I V D GEY C+A N A+ SS + I+ P+F L D H + + C
Sbjct: 65 INKVDHSDVGEYTCKAENSVGAVASSAVLVIKERKLPPSFARKLKDVHETLGFPVAFECR 124
Query: 512 AFGVPDVTYSWFRNGELLNSETLPLEDQDRYFI----QDNVLTIRYLNPERDPAMYQCRA 567
G + SW+++GE L+D L I + Y C A
Sbjct: 125 INGSEPLQVSWYKDGE-------LLKDDANLQTSFIHNVATLQILQTDQS-HVGQYNCSA 176
Query: 568 KNQLKTRYSSAQLRVLT--LKPSFKKRPLESETYAGEGGNVTIFCNPEAAPKPKFVWKKD 625
N L T SSA+L + + P F +P G + T C+ K W KD
Sbjct: 177 SNPLGTASSSAKLTLSEHEVPPFFDLKP--VSVDLALGESGTFKCHVTGTAPIKITWAKD 234
Query: 626 GNIIGSGGRRKI---FENGNLLISPVSRDDSGIYSCTATNVHGMDESKGRLIVLHGPSYY 682
I GG K+ L + V++ D+G Y+C A+NV G D +L V P +
Sbjct: 235 NREIRPGGNYKMTLVENTATLTVLKVTKGDAGQYTCYASNVAGKDSCSAQLGVQEPPRFI 294
Query: 683 EQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLL 742
++L P + + + C + V +W + I + +L
Sbjct: 295 KKLEPSRIVKQDEHTRYECKIGGSPEIKV--LWYKDETEIQESSKFRMSFVE---SVAVL 349
Query: 743 EITNASFADAGEYECVVKSTVGKISTKTTVIVEGPP---GLPGGVQVVE----------V 789
E+ N S D+G+Y C + G S+ T++ V+ PP P V+ ++
Sbjct: 350 EMYNLSVEDSGDYTCEAHNAAGSASSSTSLKVKEPPVFRKKPHPVETLKGADVHLECELQ 409
Query: 790 HKTSATIQWTDGATNGRPIT---HYKI 813
+ W + R + YKI
Sbjct: 410 GTPPFQVSWH---KDKRELRSGKKYKI 433
Score = 261 bits (669), Expect = 9e-77
Identities = 99/532 (18%), Positives = 170/532 (31%), Gaps = 67/532 (12%)
Query: 323 YPGVNYYWARDYFPNFVEEDKRVFVSYD---GALYFSALEQIDAGNYSCNVQSKVSDTGR 379
P + W +++ + + + +L + ++ D G Y+C ++ V
Sbjct: 32 TPEIRIAWYKEHTK--LRSAPAYKMQFKNNVASLVINKVDHSDVGEYTCKAENSVGAVAS 89
Query: 380 NGPFFPLKVFPHSNFQQLKFPNNFPKTFPEAPK-----AGDKVRLECVAFGYPVPSYNWT 434
+ L + P +F K G V EC G +W
Sbjct: 90 S---AVLVIKER----------KLPPSFARKLKDVHETLGFPVAFECRINGSEPLQVSWY 136
Query: 435 RRGSPLPRNA----YFENFNRILTIPNVKVEDQGEYICRASNDRSALESSVTISIQAE-- 488
+ G L +A F + L I G+Y C ASN SS +++
Sbjct: 137 KDGELLKDDANLQTSFIHNVATLQILQTDQSHVGQYNCSASNPLGTASSSAKLTLSEHEV 196
Query: 489 -PNFTIPLTDKHMDNQADLTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQ-- 545
P F + + T+ C G + +W ++ + Y +
Sbjct: 197 PPFFDLKPVSVDLALGESGTFKCHVTGTAPIKITWAKDNR-------EIRPGGNYKMTLV 249
Query: 546 --DNVLTIRYLNPERDPAMYQCRAKNQLKTRYSSAQLRVLTLKPSFKKRPLESETYAGEG 603
LT+ + D Y C A N SAQL V P F K+ S +
Sbjct: 250 ENTATLTVLKVTKG-DAGQYTCYASNVAGKDSCSAQLGVQE-PPRFIKKLEPSRI-VKQD 306
Query: 604 GNVTIFCNPEAAPKPKFVWKKDGNIIGSGGR---RKIFENGNLLISPVSRDDSGIYSCTA 660
+ C +P+ K +W KD I + + L + +S +DSG Y+C A
Sbjct: 307 EHTRYECKIGGSPEIKVLWYKDETEIQESSKFRMSFVESVAVLEMYNLSVEDSGDYTCEA 366
Query: 661 TNVHGMDESKGRLIVLHGPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGV 720
N G S L V P + + P + ++ L C V W +
Sbjct: 367 HNAAGSASSSTSLKVKEPPVF-RKKPHPVETLKGADVHLECELQGTPPFQV--SWHKDKR 423
Query: 721 RIGNMDLNELETPNINIDGGLLEITNASFADAGEYECVVKSTVGKISTKTTVIVEGPP-- 778
+ + ++ + + I N AD GEY+C + VG + ++ ++ PP
Sbjct: 424 ELRSGKKYKIMS---ENFLTSIHILNVDSADIGEYQCKASNDVGSDTCVGSITLKAPPRF 480
Query: 779 -GLPGGVQVVE----------VHKTSATIQWT-DGATNGRPITHYKIIARTN 818
+ V ++ W D R + I N
Sbjct: 481 VKKLSDISTVVGEEVQLQATIEGAEPISVAWFKDKGEIVRESDNIWISYSEN 532
Score = 255 bits (654), Expect = 1e-74
Identities = 106/514 (20%), Positives = 170/514 (33%), Gaps = 73/514 (14%)
Query: 190 PYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDK 249
P F ++ DV L + C G W+K+ L+ ++
Sbjct: 102 PSFARKLKDVHETLGF-----PVAFECRINGSEPLQVSWYKDG--------ELLKDDANL 148
Query: 250 RFTLSG--GNLIINDPRQVEDRGSYHCKASNKFGSIISESVQLAFGFIGEFNLKRAPEIG 307
+ + L I Q G Y+C ASN G+ S S +L + P
Sbjct: 149 QTSFIHNVATLQILQTDQ-SHVGQYNCSASNPLGTASS-SAKLTLS-----EHEVPPFFD 201
Query: 308 NQ------NWGKA--MFCDPPTNYPGVNYYWARDYFPNFVEEDKRVFVSYD---GALYFS 356
+ G++ C T + WA+D + ++ L
Sbjct: 202 LKPVSVDLALGESGTFKC-HVTGTAPIKITWAKDNRE--IRPGGNYKMTLVENTATLTVL 258
Query: 357 ALEQIDAGNYSCNVQSKVSDTGRNGPFFPLKVF--PHSNFQQLKFPNNFPKTFPEAPKAG 414
+ + DAG Y+C + G++ L V P F + K
Sbjct: 259 KVTKGDAGQYTCYASNVA---GKDSCSAQLGVQEPPR--FIK-------KLEPSRIVKQD 306
Query: 415 DKVRLECVAFGYPVPSYNWTRRGSPLPRNA----YFENFNRILTIPNVKVEDQGEYICRA 470
+ R EC G P W + + + ++ F +L + N+ VED G+Y C A
Sbjct: 307 EHTRYECKIGGSPEIKVLWYKDETEIQESSKFRMSFVESVAVLEMYNLSVEDSGDYTCEA 366
Query: 471 SNDRSALESSVTISIQAEPNFTIPLTDKHMDNQADLTWTCEAFGVPDVTYSWFRNGELLN 530
N + SS ++ ++ P F AD+ CE G P SW ++
Sbjct: 367 HNAAGSASSSTSLKVKEPPVFRKKPHPVETLKGADVHLECELQGTPPFQVSWHKDKR--- 423
Query: 531 SETLPLEDQDRYFIQDN----VLTIRYLNPERDPAMYQCRAKNQLKTRYSSAQLRVLTLK 586
L +Y I + I ++ D YQC+A N + + + +
Sbjct: 424 ----ELRSGKKYKIMSENFLTSIHILNVDSA-DIGEYQCKASNDVGSDTCVGSITLKA-P 477
Query: 587 PSFKKRPLESETYAGEGGNVTIFCNPEAAPKPKFVWKKDGN-IIGSGGRRKIFENGN--- 642
P F K+ S+ G V + E A W KD I+ I + N
Sbjct: 478 PRFVKKL--SDISTVVGEEVQLQATIEGAEPISVAWFKDKGEIVRESDNIWISYSENIAT 535
Query: 643 LLISPVSRDDSGIYSCTATNVHGMDESKGRLIVL 676
L S ++G Y+C N G E L VL
Sbjct: 536 LQFSRAEPANAGKYTCQIKNEAGTQECFATLSVL 569
>3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor
protein tyrosine phosphatase; HET: NAG; 2.00A {Mus
musculus} PDB: 3jxa_A*
Length = 384
Score = 352 bits (906), Expect = e-113
Identities = 127/402 (31%), Positives = 200/402 (49%), Gaps = 31/402 (7%)
Query: 189 GPYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSD 248
GP F+++P+ V+F L + LSC G P P W +D D
Sbjct: 5 GPVFVQEPSHVMFPLDSEE--KKVKLSCEVKGNPKPHIRWKLNG--------TDVDIGMD 54
Query: 249 KRFTLSGGNLIINDPRQVEDRGSYHCKASNKFGSIISESVQLAFGFIGEFNLK-RAPEIG 307
R+++ G+L+IN+P + +D G+Y C A+N FG+I+S +L F ++ F + R+
Sbjct: 55 FRYSVVDGSLLINNPNKTQDAGTYQCIATNSFGTIVSREAKLQFAYLENFKTRTRSTVSV 114
Query: 308 NQNWGKAMFCDPPTNYPGVNYYWARDYFPNFVEEDKRVFVSYDGALYFSALEQIDAGNYS 367
+ G + C PP + ++Y W + +P++ ++++R G LY + +E+ D GNY+
Sbjct: 115 RRGQGMVLLCGPPPHSGELSYAWIFNEYPSY-QDNRRFVSQETGNLYIAKVEKSDVGNYT 173
Query: 368 CNVQSKVSDTGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPEAPK-----AGDKVRLECV 422
C V + V++ GP PL + + + PK + P+ G V+LEC
Sbjct: 174 CVVTNTVTNHKVLGPPTPLILRNDGVMGEYE-----PKIEVQFPETVPAEKGTTVKLECF 228
Query: 423 AFGYPVPSYNWTRR-GSPLPRNAYFENFNRILTIPNVKVEDQGEYICRASNDRSALESSV 481
A G PVP+ W R G P+ R A N IL IPN + ED G Y C A N R +
Sbjct: 229 ALGNPVPTILWRRADGKPIARKARRHKSNGILEIPNFQQEDAGSYECVAENSRGKNVAKG 288
Query: 482 TISIQAEPNFTIPLTDKHMDNQADLTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDR 541
++ A+PN+ + D H+ + + W C+A G P TY W +NG+ PL +DR
Sbjct: 289 QLTFYAQPNWVQIINDIHVAMEESVFWECKANGRPKPTYRWLKNGD-------PLLTRDR 341
Query: 542 YFIQDNVLTIRYLNPERDPAMYQCRAKNQLKTRYSSAQLRVL 583
I+ L I +N D MYQC A+N+ +SSA+L V+
Sbjct: 342 IQIEQGTLNITIVNLS-DAGMYQCVAENKHGVIFSSAELSVI 382
Score = 224 bits (573), Expect = 2e-65
Identities = 86/377 (22%), Positives = 141/377 (37%), Gaps = 34/377 (9%)
Query: 414 GDKVRLECVAFGYPVPSYNWTRRGSPLP--RNAYFENFNRILTIPNV-KVEDQGEYICRA 470
KV+L C G P P W G+ + + + + L I N K +D G Y C A
Sbjct: 23 EKKVKLSCEVKGNPKPHIRWKLNGTDVDIGMDFRYSVVDGSLLINNPNKTQDAGTYQCIA 82
Query: 471 SNDRSALES-SVTISIQAEPNFTI-PLTDKHMDNQADLTWTCEA-FGVPDVTYSWFRNGE 527
+N + S + NF + + + C +++Y+W N
Sbjct: 83 TNSFGTIVSREAKLQFAYLENFKTRTRSTVSVRRGQGMVLLCGPPPHSGELSYAWIFNEY 142
Query: 528 LLNSETLPLEDQDRYFIQDN-VLTIRYLNPERDPAMYQCRAKNQLKTRYSSAQLRVLTLK 586
+D R+ Q+ L I + D Y C N + L L+
Sbjct: 143 PS------YQDNRRFVSQETGNLYIAKVEKS-DVGNYTCVVTNTVTNHKVLGPPTPLILR 195
Query: 587 ---------PSFKKRPLESETYAGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKI 637
P + + E+ A +G V + C P P +W++ + R+
Sbjct: 196 NDGVMGEYEPKIEVQFPETVP-AEKGTTVKLECFALGNPVPTILWRRADGKPIARKARRH 254
Query: 638 FENGNLLISPVSRDDSGIYSCTATNVHGMDESKGRLIVLHGPSYYEQLPPKITIAAHRNL 697
NG L I ++D+G Y C A N G + +KG+L + + Q+ I +A ++
Sbjct: 255 KSNGILEIPNFQQEDAGSYECVAENSRGKNVAKGQLTF-YAQPNWVQIINDIHVAMEESV 313
Query: 698 QLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEITNASFADAGEYEC 757
C A+ Y W NG + L I I+ G L IT + +DAG Y+C
Sbjct: 314 FWECKANGRP--KPTYRWLKNGDPL-------LTRDRIQIEQGTLNITIVNLSDAGMYQC 364
Query: 758 VVKSTVGKISTKTTVIV 774
V ++ G I + + V
Sbjct: 365 VAENKHGVIFSSAELSV 381
Score = 196 bits (501), Expect = 1e-55
Identities = 78/371 (21%), Positives = 127/371 (34%), Gaps = 40/371 (10%)
Query: 323 YPGVNYYWARDYFPNFVEEDKRVFVSYDGALYFSALEQI-DAGNYSCNVQSKVSDTGRNG 381
P + W + + D R V DG+L + + DAG Y C +
Sbjct: 35 NPKPHIRWKLNGTDVDIGMDFRYSVV-DGSLLINNPNKTQDAGTYQCIATNSFG------ 87
Query: 382 PFFPLKVFPHSNFQQLKFPNNFPKTFPEAPKA--GDKVRLECVA-FGYPVPSYNWTRRGS 438
+ Q + NF G + L C SY W
Sbjct: 88 -----TIVSREAKLQFAYLENFKTRTRSTVSVRRGQGMVLLCGPPPHSGELSYAWIFNEY 142
Query: 439 PLPRNA--YFENFNRILTIPNVKVEDQGEYICRASN---DRSALESSVTISIQAEPN--- 490
P ++ + L I V+ D G Y C +N + L + ++ +
Sbjct: 143 PSYQDNRRFVSQETGNLYIAKVEKSDVGNYTCVVTNTVTNHKVLGPPTPLILRNDGVMGE 202
Query: 491 -----FTIPLTDKHMDNQADLTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQ 545
+ + C A G P T W R P+ + R
Sbjct: 203 YEPKIEVQFPETVPAEKGTTVKLECFALGNPVPTILWRRADGK------PIARKARRHKS 256
Query: 546 DNVLTIRYLNPERDPAMYQCRAKNQLKTRYSSAQLRVLTLKPSFKKRPLESETYAGEGGN 605
+ +L I E D Y+C A+N + QL +P++ + ++ + +
Sbjct: 257 NGILEIPNFQQE-DAGSYECVAENSRGKNVAKGQLTFYA-QPNWVQII--NDIHVAMEES 312
Query: 606 VTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTATNVHG 665
V C PKP + W K+G+ + + R +I E G L I+ V+ D+G+Y C A N HG
Sbjct: 313 VFWECKANGRPKPTYRWLKNGDPLLTRDRIQI-EQGTLNITIVNLSDAGMYQCVAENKHG 371
Query: 666 MDESKGRLIVL 676
+ S L V+
Sbjct: 372 VIFSSAELSVI 382
Score = 186 bits (473), Expect = 6e-52
Identities = 80/353 (22%), Positives = 124/353 (35%), Gaps = 49/353 (13%)
Query: 487 AEPNFTI---PLTDKHMDNQADLTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYF 543
+ P F + + + +CE G P W NG ++ + RY
Sbjct: 4 SGPVFVQEPSHVMFPLDSEEKKVKLSCEVKGNPKPHIRWKLNGTDVD-----IGMDFRYS 58
Query: 544 IQDNVLTIRYLNPERDPAMYQCRAKNQLKTRYS-SAQLRVLTLKPSFKKRPLESETYAGE 602
+ D L I N +D YQC A N T S A+L+ L +FK R + +
Sbjct: 59 VVDGSLLINNPNKTQDAGTYQCIATNSFGTIVSREAKLQFAYL-ENFKTRTRSTVS-VRR 116
Query: 603 GGNVTIFCN-PEAAPKPKFVWKKDGNIIGSGGRR-KIFENGNLLISPVSRDDSGIYSCTA 660
G + + C P + + + W + RR E GNL I+ V + D G Y+C
Sbjct: 117 GQGMVLLCGPPPHSGELSYAWIFNEYPSYQDNRRFVSQETGNLYIAKVEKSDVGNYTCVV 176
Query: 661 TNVHGMDESKGRLIVL----------HGPSYYEQLPPKITIAAHRNLQLRCSAHTEELLD 710
TN + G L + P Q P + ++L C A +
Sbjct: 177 TNTVTNHKVLGPPTPLILRNDGVMGEYEPKIEVQFPETVPAEKGTTVKLECFALGNPVPT 236
Query: 711 VAYIWTH-NGVRIGNMDLNELETPNINIDGGLLEITNASFADAGEYECVVKSTVGKISTK 769
+ +W +G I + G+LEI N DAG YECV +++ GK K
Sbjct: 237 I--LWRRADGKPIAR-------KARRHKSNGILEIPNFQQEDAGSYECVAENSRGKNVAK 287
Query: 770 TTVIVEGPPGL--PGGVQVVEVHKT-----------SATIQWTDGATNGRPIT 809
+ P V + ++ T +W NG P+
Sbjct: 288 GQLTFYAQPNWVQIINDIHVAMEESVFWECKANGRPKPTYRWL---KNGDPLL 337
Score = 133 bits (335), Expect = 1e-33
Identities = 61/297 (20%), Positives = 91/297 (30%), Gaps = 48/297 (16%)
Query: 210 NDITLSCYA-GGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVED 268
+ L C SY W +Y + + + GNL I + D
Sbjct: 118 QGMVLLCGPPPHSGELSYAWIFNEY--------PSYQDNRRFVSQETGNLYIAKVEK-SD 168
Query: 269 RGSYHCKASNKFGSIISESVQLAFGFIGEFNLKRAPEIGNQNWGKAMFCDPPTN------ 322
G+Y C +N + L + + + P
Sbjct: 169 VGNYTCVVTNTVTNHKVLG--------PPTPLILRNDGVMGEYEPKIEVQFPETVPAEKG 220
Query: 323 -----------YPGVNYYWARDYFPNFVEEDKRVFVSYDGALYFSALEQIDAGNYSCNVQ 371
P W R K +G L +Q DAG+Y C +
Sbjct: 221 TTVKLECFALGNPVPTILWRRA--DGKPIARKARRHKSNGILEIPNFQQEDAGSYECVAE 278
Query: 372 SKVSDTGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPEAPKAGDKVRLECVAFGYPVPSY 431
+ G+N L + N+ Q+ N+ + V EC A G P P+Y
Sbjct: 279 NSR---GKNVAKGQLTFYAQPNWVQI--IND--IHVAM----EESVFWECKANGRPKPTY 327
Query: 432 NWTRRGSPLPRNAYFENFNRILTIPNVKVEDQGEYICRASNDRSALESSVTISIQAE 488
W + G PL + L I V + D G Y C A N + SS +S+ AE
Sbjct: 328 RWLKNGDPLLTRDRIQIEQGTLNITIVNLSDAGMYQCVAENKHGVIFSSAELSVIAE 384
>1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus
gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB:
2om5_A
Length = 382
Score = 344 bits (884), Expect = e-110
Identities = 133/401 (33%), Positives = 184/401 (45%), Gaps = 29/401 (7%)
Query: 189 GPYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSD 248
GP F +QP +F S +TL+C A P +Y W + D
Sbjct: 4 GPVFEEQPAHTLFPEG--SAEEKVTLTCRARANPPATYRWKMNG--------TELKMGPD 53
Query: 249 KRFTLSGGNLIINDPRQVEDRGSYHCKASNKFGSIISESVQLAFGFIGEFNLK-RAPEIG 307
R+ L G+L+I++P + +D GSY C A+N G+++S L FGF+ EF+ + R P
Sbjct: 54 SRYRLVAGDLVISNPVKAKDAGSYQCVATNARGTVVSREASLRFGFLQEFSAEERDPVKI 113
Query: 308 NQNWGKAMFCDPPTNYPGVNYYWARDYFPNFVEEDKRVFVSY-DGALYFSALEQIDAGNY 366
+ WG C PP +YP ++Y W + FPNF+ D R FVS G LY + E D GNY
Sbjct: 114 TEGWGVMFTCSPPPHYPALSYRWLLNEFPNFIPADGRRFVSQTTGNLYIAKTEASDLGNY 173
Query: 367 SCNVQSKVSDTG--RNGPFFPLKVFPHSNFQQLKFPNNFPKTFPEAPKA--GDKVRLECV 422
SC S + F L + Q + + FP A G V LEC
Sbjct: 174 SCFATSHIDFITKSVFSKFSQLSLAAEDARQ---YAPSIKAKFPADTYALTGQMVTLECF 230
Query: 423 AFGYPVPSYNWTRRGSPLPRNAYFENFNRILTIPNVKVEDQGEYICRASNDRSALESSVT 482
AFG PVP W + + + +L I NV ED+G Y C A N +
Sbjct: 231 AFGNPVPQIKWRKLDGSQTSK--WLSSEPLLHIQNVDFEDEGTYECEAENIKGRDTYQGR 288
Query: 483 ISIQAEPNFTIPLTDKHMDNQADLTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRY 542
I I A+P++ +TD D +DL W+C A G P W R+G+ PL Q+R
Sbjct: 289 IIIHAQPDWLDVITDTEADIGSDLRWSCVASGKPRPAVRWLRDGQ-------PLASQNRI 341
Query: 543 FIQDNVLTIRYLNPERDPAMYQCRAKNQLKTRYSSAQLRVL 583
+ L L E D MYQC A+N+ T Y+SA+L V
Sbjct: 342 EVSGGELRFSKLVLE-DSGMYQCVAENKHGTVYASAELTVQ 381
Score = 217 bits (555), Expect = 5e-63
Identities = 92/387 (23%), Positives = 145/387 (37%), Gaps = 35/387 (9%)
Query: 406 TFPEAPKAGDKVRLECVAFGYPVPSYNWTRRGSPLP--RNAYFENFNRILTIPN-VKVED 462
FPE A +KV L C A P +Y W G+ L ++ + L I N VK +D
Sbjct: 15 LFPEG-SAEEKVTLTCRARANPPATYRWKMNGTELKMGPDSRYRLVAGDLVISNPVKAKD 73
Query: 463 QGEYICRASNDRSALES-SVTISIQAEPNFTI-PLTDKHMDNQADLTWTCEA-FGVPDVT 519
G Y C A+N R + S ++ F+ + + +TC P ++
Sbjct: 74 AGSYQCVATNARGTVVSREASLRFGFLQEFSAEERDPVKITEGWGVMFTCSPPPHYPALS 133
Query: 520 YSWFRNGELLNSETLPLEDQDRYFIQDN-VLTIRYLNPERDPAMYQCRAKNQL----KTR 574
Y W N D R+ Q L I D Y C A + + K+
Sbjct: 134 YRWLLNEFPN----FIPADGRRFVSQTTGNLYIAKTEAS-DLGNYSCFATSHIDFITKSV 188
Query: 575 YSSAQLRVLTLKPSFKKRP-----LESETYAGEGGNVTIFCNPEAAPKPKFVWKKDGNII 629
+S L + + + P ++TYA G VT+ C P P+ W+K
Sbjct: 189 FSKFSQLSLAAEDARQYAPSIKAKFPADTYALTGQMVTLECFAFGNPVPQIKWRKLD--- 245
Query: 630 GSGGRRKIFENGNLLISPVSRDDSGIYSCTATNVHGMDESKGRLIVLHGPSYYEQLPPKI 689
GS + + L I V +D G Y C A N+ G D +GR+I+ H + +
Sbjct: 246 GSQTSKWLSSEPLLHIQNVDFEDEGTYECEAENIKGRDTYQGRIII-HAQPDWLDVITDT 304
Query: 690 TIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEITNASF 749
+L+ C A + A W +G + I + GG L +
Sbjct: 305 EADIGSDLRWSCVASGKP--RPAVRWLRDGQPLA-------SQNRIEVSGGELRFSKLVL 355
Query: 750 ADAGEYECVVKSTVGKISTKTTVIVEG 776
D+G Y+CV ++ G + + V+
Sbjct: 356 EDSGMYQCVAENKHGTVYASAELTVQA 382
Score = 193 bits (491), Expect = 2e-54
Identities = 79/374 (21%), Positives = 129/374 (34%), Gaps = 46/374 (12%)
Query: 323 YPGVNYYWARDYFPNFVEEDKRVFVSYDGALYF-SALEQIDAGNYSCNVQSKVSDTGRNG 381
P Y W + + D R + G L + ++ DAG+Y C +
Sbjct: 34 NPPATYRWKMNGTELKMGPDSRYRLV-AGDLVISNPVKAKDAGSYQCVATNARG------ 86
Query: 382 PFFPLKVFPHSNFQQLKFPNNFPKTFPEAPKA--GDKVRLECVA-FGYPVPSYNWTRRGS 438
V + F F + K G V C YP SY W
Sbjct: 87 -----TVVSREASLRFGFLQEFSAEERDPVKITEGWGVMFTCSPPPHYPALSYRWLLNEF 141
Query: 439 PLPRNAYFENF----NRILTIPNVKVEDQGEYICRASNDRSALESSV-------TISIQA 487
P A F L I + D G Y C A++ + SV +++ +
Sbjct: 142 PNFIPADGRRFVSQTTGNLYIAKTEASDLGNYSCFATSHIDFITKSVFSKFSQLSLAAED 201
Query: 488 EPNFTIPLTDKHMDNQA-----DLTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRY 542
+ + K + +T C AFG P W + S ++
Sbjct: 202 ARQYAPSIKAKFPADTYALTGQMVTLECFAFGNPVPQIKWRKLDGSQTS---------KW 252
Query: 543 FIQDNVLTIRYLNPERDPAMYQCRAKNQLKTRYSSAQLRVLTLKPSFKKRPLESETYAGE 602
+ +L I+ ++ E D Y+C A+N ++ + +P + ++T A
Sbjct: 253 LSSEPLLHIQNVDFE-DEGTYECEAENIKGRDTYQGRIIIHA-QPDWLDVI--TDTEADI 308
Query: 603 GGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTATN 662
G ++ C P+P W +DG + S R ++ G L S + +DSG+Y C A N
Sbjct: 309 GSDLRWSCVASGKPRPAVRWLRDGQPLASQNRIEV-SGGELRFSKLVLEDSGMYQCVAEN 367
Query: 663 VHGMDESKGRLIVL 676
HG + L V
Sbjct: 368 KHGTVYASAELTVQ 381
Score = 179 bits (455), Expect = 2e-49
Identities = 77/353 (21%), Positives = 107/353 (30%), Gaps = 53/353 (15%)
Query: 489 PNFTIPLTD---KHMDNQADLTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQ 545
P F + +T TC A P TY W NG L + RY +
Sbjct: 5 PVFEEQPAHTLFPEGSAEEKVTLTCRARANPPATYRWKMNGTELK-----MGPDSRYRLV 59
Query: 546 DNVLTIRYLNPERDPAMYQCRAKNQLKTRYS-SAQLRVLTLKPSFKKRPLESETYAGEGG 604
L I +D YQC A N T S A LR L F + EG
Sbjct: 60 AGDLVISNPVKAKDAGSYQCVATNARGTVVSREASLRFGFL-QEFSAEERDPVK-ITEGW 117
Query: 605 NVTIFCN-PEAAPKPKFVWKKDGN---IIGSGGRRKIFENGNLLISPVSRDDSGIYSCTA 660
V C+ P P + W + I G R GNL I+ D G YSC A
Sbjct: 118 GVMFTCSPPPHYPALSYRWLLNEFPNFIPADGRRFVSQTTGNLYIAKTEASDLGNYSCFA 177
Query: 661 TNVHGMDESK-----------GRLIVLHGPSYYEQLPPKITIAAHRNLQLRCSAHTEELL 709
T+ + PS + P + + L C A +
Sbjct: 178 TSHIDFITKSVFSKFSQLSLAAEDARQYAPSIKAKFPADTYALTGQMVTLECFAFGNPVP 237
Query: 710 DVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEITNASFADAGEYECVVKSTVGKISTK 769
+ W T LL I N F D G YEC ++ G+ + +
Sbjct: 238 QI--KWRKLDGSQ---------TSKWLSSEPLLHIQNVDFEDEGTYECEAENIKGRDTYQ 286
Query: 770 TTVIVEGPPGLPGGVQVVEVHKTSA-------------TIQWTDGATNGRPIT 809
+I+ P + E S ++W +G+P+
Sbjct: 287 GRIIIHAQPDWLDVITDTEADIGSDLRWSCVASGKPRPAVRWL---RDGQPLA 336
Score = 134 bits (338), Expect = 4e-34
Identities = 60/299 (20%), Positives = 96/299 (32%), Gaps = 54/299 (18%)
Query: 210 NDITLSCYA-GGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFT-LSGGNLIINDPRQVE 267
+ +C YP SY W ++ P +RF + GNL I
Sbjct: 117 WGVMFTCSPPPHYPALSYRWLLNEF-------PNFIPADGRRFVSQTTGNLYIAKTEA-S 168
Query: 268 DRGSYHCKASNKFGSIISE--SVQLAFGFIGEFNLKRAPEIGNQNWGKAMFCDPPTN--- 322
D G+Y C A++ I S E + AP I P +
Sbjct: 169 DLGNYSCFATSHIDFITKSVFSKFSQLSLAAEDARQYAPSI---------KAKFPADTYA 219
Query: 323 --------------YPGVNYYWARDYFPNFVEEDKRVFVSYDGALYFSALEQIDAGNYSC 368
P W + ++S + L+ ++ D G Y C
Sbjct: 220 LTGQMVTLECFAFGNPVPQIKWRKLD-----GSQTSKWLSSEPLLHIQNVDFEDEGTYEC 274
Query: 369 NVQSKVSDTGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPEAPKAGDKVRLECVAFGYPV 428
++ GR+ + + ++ + + G +R CVA G P
Sbjct: 275 EAENIK---GRDTYQGRIIIHAQPDWLDV--ITD--TEADI----GSDLRWSCVASGKPR 323
Query: 429 PSYNWTRRGSPLPRNAYFENFNRILTIPNVKVEDQGEYICRASNDRSALESSVTISIQA 487
P+ W R G PL E L + +ED G Y C A N + +S +++QA
Sbjct: 324 PAVRWLRDGQPLASQNRIEVSGGELRFSKLVLEDSGMYQCVAENKHGTVYASAELTVQA 382
>3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo
sapiens} PDB: 3p40_A*
Length = 404
Score = 326 bits (837), Expect = e-103
Identities = 110/410 (26%), Positives = 170/410 (41%), Gaps = 32/410 (7%)
Query: 186 IPRGPYFIKQP-TDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLID 244
+ + P KQ D + D ++I + C A G P PS+ W + +
Sbjct: 13 LTQPPTITKQSAKDHIVDPR-----DNILIECEAKGNPAPSFHWTRNS--------RFFN 59
Query: 245 PLSDKRFTL--SGGNLII---NDPRQVEDRGSYHCKASNKFGSIISESVQLAFGFIGEFN 299
D R ++ G L+I + R E G Y C A NKFG+ +S ++L +
Sbjct: 60 IAKDPRVSMRRRSGTLVIDFRSGGRPEEYEGEYQCFARNKFGTALSNRIRLQVSKSPLWP 119
Query: 300 LKRAPEIGNQNWGKAMF--CDPPTNYPGVNYYWARDYFPNFVEEDKRVFVSYDGALYFSA 357
K + G + C+PP P +W + +DKRV ++G LYFS
Sbjct: 120 -KENLDPVVVQEGAPLTLQCNPPPGLPSPVIFWMSSSMEP-ITQDKRVSQGHNGDLYFSN 177
Query: 358 LEQIDA-GNYSCNVQSKVSDTGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPEAPKA--G 414
+ D +YSCN + + T + F LKV + +P+ + G
Sbjct: 178 VMLQDMQTDYSCNARFHFTHTIQQKNPFTLKVLTTRGVAERTPSFMYPQGTASSQMVLRG 237
Query: 415 DKVRLECVAFGYPVPSYNWTRRGSPLPRN-AYFENFNRILTIPNVKVEDQGEYICRASND 473
+ LEC+A G P P W ++G LP + A FENFN+ L I NV ED GEY C ASN
Sbjct: 238 MDLLLECIASGVPTPDIAWYKKGGDLPSDKAKFENFNKALRITNVSEEDSGEYFCLASNK 297
Query: 474 RSALESSVTISIQAEPNFTIPLTDKHMDNQADLTWTCEAFGVPDVTYSWFRNGELLNSET 533
++ ++++ ++A P + + + D C A G P T W NGE L
Sbjct: 298 MGSIRHTISVRVKAAPYWLDEPKNLILAPGEDGRLVCRANGNPKPTVQWMVNGEPLQ--- 354
Query: 534 LPLEDQDRYFIQDNVLTIRYLNPERDPAMYQCRAKNQLKTRYSSAQLRVL 583
+ + + R A+YQC N+ ++A + VL
Sbjct: 355 -SAPPNPNREVAGDTIIFRDTQIS-SRAVYQCNTSNEHGYLLANAFVSVL 402
Score = 220 bits (561), Expect = 1e-63
Identities = 85/388 (21%), Positives = 133/388 (34%), Gaps = 45/388 (11%)
Query: 414 GDKVRLECVAFGYPVPSYNWTRRGSPL-----PRNAYFENFNRILTIPNV----KVEDQG 464
D + +EC A G P PS++WTR PR + + L I E +G
Sbjct: 32 RDNILIECEAKGNPAPSFHWTRNSRFFNIAKDPRVSMRRR-SGTLVIDFRSGGRPEEYEG 90
Query: 465 EYICRASNDRSALES-SVTISIQAEPNFTIPLTDKHMDNQA-----DLTWTCEAF-GVPD 517
EY C A N S + + + P + +++D LT C G+P
Sbjct: 91 EYQCFARNKFGTALSNRIRLQVSKSPLWP----KENLDPVVVQEGAPLTLQCNPPPGLPS 146
Query: 518 VTYSWFRNGELLNSETLPLEDQDRYFIQDN-VLTIRYLNPERDPAMYQCRAKNQLKTRYS 576
W + P+ R N L + + Y C A+
Sbjct: 147 PVIFWMSSSME------PITQDKRVSQGHNGDLYFSNVMLQDMQTDYSCNARFHFTHTIQ 200
Query: 577 S---AQLRVLTLKPSFKKRP-------LESETYAGEGGNVTIFCNPEAAPKPKFVWKKDG 626
L+VLT + ++ P S G ++ + C P P W K G
Sbjct: 201 QKNPFTLKVLTTRGVAERTPSFMYPQGTASSQMVLRGMDLLLECIASGVPTPDIAWYKKG 260
Query: 627 NIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTATNVHGMDESKGRLIVLHGPSYYEQLP 686
+ S + N L I+ VS +DSG Y C A+N G + V Y+ P
Sbjct: 261 GDLPSDKAKFENFNKALRITNVSEEDSGEYFCLASNKMGSIRHTISVRV-KAAPYWLDEP 319
Query: 687 PKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEITN 746
+ +A + +L C A+ V W NG + + N PN + G + +
Sbjct: 320 KNLILAPGEDGRLVCRANGNPKPTV--QWMVNGEPLQSAPPN----PNREVAGDTIIFRD 373
Query: 747 ASFADAGEYECVVKSTVGKISTKTTVIV 774
+ Y+C + G + V V
Sbjct: 374 TQISSRAVYQCNTSNEHGYLLANAFVSV 401
Score = 188 bits (478), Expect = 2e-52
Identities = 72/380 (18%), Positives = 128/380 (33%), Gaps = 47/380 (12%)
Query: 323 YPGVNYYWARDYFPNFVEEDKRVFVS-YDGALYF----SALEQIDAGNYSCNVQSKVSDT 377
P +++W R+ + +D RV + G L + G Y C ++K
Sbjct: 44 NPAPSFHWTRNSRFFNIAKDPRVSMRRRSGTLVIDFRSGGRPEEYEGEYQCFARNKFG-- 101
Query: 378 GRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPE--APKAGDKVRLEC-VAFGYPVPSYNWT 434
+ Q+ +PK + + G + L+C G P P W
Sbjct: 102 ---------TALSNRIRLQVSKSPLWPKENLDPVVVQEGAPLTLQCNPPPGLPSPVIFWM 152
Query: 435 RRGSPL-PRNAYFENF-NRILTIPNVKVED-QGEYICRASND-----RSALESSVTI--- 483
++ N L NV ++D Q +Y C A + ++ +
Sbjct: 153 SSSMEPITQDKRVSQGHNGDLYFSNVMLQDMQTDYSCNARFHFTHTIQQKNPFTLKVLTT 212
Query: 484 --SIQAEPNFTIPLT---DKHMDNQADLTWTCEAFGVPDVTYSWFRNGELLNSETLPLED 538
+ P+F P + + DL C A GVP +W++ G L S D
Sbjct: 213 RGVAERTPSFMYPQGTASSQMVLRGMDLLLECIASGVPTPDIAWYKKGGDLPS------D 266
Query: 539 QDRYFIQDNVLTIRYLNPERDPAMYQCRAKNQLKTRYSSAQLRVLTLKPSFKKRPLESET 598
+ ++ + L I ++ E D Y C A N++ + + +RV P + P
Sbjct: 267 KAKFENFNKALRITNVSEE-DSGEYFCLASNKMGSIRHTISVRVKA-APYWLDEP--KNL 322
Query: 599 YAGEGGNVTIFCNPEAAPKPKFVWKKDGNII--GSGGRRKIFENGNLLISPVSRDDSGIY 656
G + + C PKP W +G + + ++ +Y
Sbjct: 323 ILAPGEDGRLVCRANGNPKPTVQWMVNGEPLQSAPPNPNREVAGDTIIFRDTQISSRAVY 382
Query: 657 SCTATNVHGMDESKGRLIVL 676
C +N HG + + VL
Sbjct: 383 QCNTSNEHGYLLANAFVSVL 402
Score = 183 bits (466), Expect = 1e-50
Identities = 76/322 (23%), Positives = 116/322 (36%), Gaps = 33/322 (10%)
Query: 477 LESSVTISIQAEPNFTI-PLTDKHMDNQADLTWTCEAFGVPDVTYSWFRNGELLNSETLP 535
++ S+ + P T D +D + ++ CEA G P ++ W RN N
Sbjct: 5 MDPSIQNELTQPPTITKQSAKDHIVDPRDNILIECEAKGNPAPSFHWTRNSRFFNIAK-- 62
Query: 536 LEDQDRYFIQDNVLTIRYLNP---ERDPAMYQCRAKNQLKTRYS-SAQLRVLTLKPSFKK 591
+ + + L I + + E YQC A+N+ T S +L+V P + K
Sbjct: 63 -DPRVSMRRRSGTLVIDFRSGGRPEEYEGEYQCFARNKFGTALSNRIRLQVSKS-PLWPK 120
Query: 592 RPLESETYAGEGGNVTIFCN-PEAAPKPKFVWKKDGNIIGSGGRR-KIFENGNLLISPVS 649
L+ EG +T+ CN P P P W + +R NG+L S V
Sbjct: 121 ENLDP-VVVQEGAPLTLQCNPPPGLPSPVIFWMSSSMEPITQDKRVSQGHNGDLYFSNVM 179
Query: 650 R-DDSGIYSCTATNVHGMDESKG---RLIVLHGPSYYEQLPPKI---------TIAAHRN 696
D YSC A + L VL E+ P + + +
Sbjct: 180 LQDMQTDYSCNARFHFTHTIQQKNPFTLKVLTTRGVAERTPSFMYPQGTASSQMVLRGMD 239
Query: 697 LQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEITNASFADAGEYE 756
L L C A D+ W G + + L ITN S D+GEY
Sbjct: 240 LLLECIASGVPTPDI--AWYKKGGDLPSDKAK------FENFNKALRITNVSEEDSGEYF 291
Query: 757 CVVKSTVGKISTKTTVIVEGPP 778
C+ + +G I +V V+ P
Sbjct: 292 CLASNKMGSIRHTISVRVKAAP 313
>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker,
immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A
Length = 642
Score = 331 bits (849), Expect = e-101
Identities = 105/575 (18%), Positives = 182/575 (31%), Gaps = 67/575 (11%)
Query: 210 NDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVEDR 269
+ + +C +Y W+ + + + + L + + D
Sbjct: 127 DAVAFTCEPETQD-ATYLWWVNN--------QSLPVSPRLQLSNGNRTLTLFNV-TRNDT 176
Query: 270 GSYHCKASNKFGSIISESVQLAFGFIGEF-NLKRAPEIGNQNWGKAMFCDPPTNYPGVNY 328
SY C+ N + S+SV L + + + + C +N P Y
Sbjct: 177 ASYKCETQNPVSARRSDSVILNVLYGPDAPTISPLNTSYRSGENLNLSCHAASN-PPAQY 235
Query: 329 YWARDYFPNFVEEDKRVFVSYDGALYFSALEQIDAGNYSCNVQSKVSDTGRNGPFFPLKV 388
W + F L+ + ++G+Y+C + + R + V
Sbjct: 236 SWFVN----------GTFQQSTQELFIPNITVNNSGSYTCQAHNSDTGLNRTTVT-TITV 284
Query: 389 FPHSNFQQLKFPNNFPKTFPEAPKAGDKVRLECVAFGYPVPSYNWTRRGSPLP--RNAYF 446
+ + N+ P D V L C Y W LP
Sbjct: 285 YAEPPKPFITSNNSNPVE------DEDAVALTCEPEIQNTT-YLWWVNNQSLPVSPRLQL 337
Query: 447 ENFNRILTIPNVKVEDQGEYICRASNDRSALES-SVTISIQAEP-NFTIPLTDKHMDNQA 504
N NR LT+ +V D G Y C N+ S S V +++ P + TI + +
Sbjct: 338 SNDNRTLTLLSVTRNDVGPYECGIQNELSVDHSDPVILNVLYGPDDPTISPSYTYYRPGV 397
Query: 505 DLTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQDNVLTIRYLNPERDPAMYQ 564
+L+ +C A P YSW +G + L I + + + +Y
Sbjct: 398 NLSLSCHAASNPPAQYSWLIDGNIQQH--------------TQELFISNITEK-NSGLYT 442
Query: 565 CRAKNQLKTRYSSAQLRVLTLKPSFKKRPLESETYAGEGGNVTIF-CNPEAAPKPKFVWK 623
C+A N + + K + + E + F C PEA W
Sbjct: 443 CQANNSASGHSRTTVKTITVSAELPKPSISSNNSKPVEDKDAVAFTCEPEAQNTTYLWWV 502
Query: 624 KDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTATNVHGMDESKG-RLIVLHGPSYY 682
++ S + N L + V+R+D+ Y C N + S L VL+GP
Sbjct: 503 NGQSLPVSPRLQLSNGNRTLTLFNVTRNDARAYVCGIQNSVSANRSDPVTLDVLYGPDTP 562
Query: 683 EQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLL 742
PP + + NL L C + + Y W NG+ + +L
Sbjct: 563 IISPPDSSYLSGANLNLSCHSASNPS--PQYSWRINGIPQQH--------------TQVL 606
Query: 743 EITNASFADAGEYECVVKSTVGKISTKTTVIVEGP 777
I + + G Y C V + + +
Sbjct: 607 FIAKITPNNNGTYACFVSNLATGRNNSIVKSITVS 641
Score = 301 bits (771), Expect = 1e-90
Identities = 126/641 (19%), Positives = 212/641 (33%), Gaps = 93/641 (14%)
Query: 210 NDITLSCYAGGYPNPSYEWFKED----------YVQDRLVANLIDPLSDKRFTLSGGNLI 259
++ L + Y W+K + YV A S + +L+
Sbjct: 15 KEVLLLVHNLPQHLFGYSWYKGERVDGNRQIIGYVIGTQQATPGPAYSGREIIYPNASLL 74
Query: 260 INDPRQVEDRGSYHCKASNKFGSIISESVQLAFGFIGEFNLKRAPEIGNQNWGKAMF--C 317
I + Q D G Y + Q + A+ C
Sbjct: 75 IQNIIQ-NDTGFYTLHVIKSDLVNEEATGQFRVYPELPKPSISSNNSKPVEDKDAVAFTC 133
Query: 318 DPPTNYPGVNYYWARDYFPNFVEEDKRVFVSYDGA-LYFSALEQIDAGNYSCNVQSKVSD 376
+P T Y W + + R+ +S L + + D +Y C Q+ VS
Sbjct: 134 EPETQDA--TYLWWVNNQS--LPVSPRLQLSNGNRTLTLFNVTRNDTASYKCETQNPVS- 188
Query: 377 TGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPEAP--KAGDKVRLECVAFGYPVPSYNWT 434
R L V + + P P ++G+ + L C A P Y+W
Sbjct: 189 -ARRSDSVILNV---------LYGPDAPTISPLNTSYRSGENLNLSCHAASNPPAQYSWF 238
Query: 435 RRGSPLPRNAYFENFNRILTIPNVKVEDQGEYICRASNDRSALESS--VTISIQAEPN-- 490
G+ + L IPN+ V + G Y C+A N + L + TI++ AEP
Sbjct: 239 VNGTFQQS-------TQELFIPNITVNNSGSYTCQAHNSDTGLNRTTVTTITVYAEPPKP 291
Query: 491 FTIPLTDKHMDNQADLTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQDNVLT 550
F ++++ + TCE TY W+ N ++LP+ + + + LT
Sbjct: 292 FITSNNSNPVEDEDAVALTCEPEIQN-TTYLWWVNN-----QSLPVSPRLQLSNDNRTLT 345
Query: 551 IRYLNPERDPAMYQCRAKNQLKTRYS-SAQLRVLTLKPSFKKRPLESETYAGEGGNVTIF 609
+ + D Y+C +N+L +S L VL P S TY G N+++
Sbjct: 346 LLSVTRN-DVGPYECGIQNELSVDHSDPVILNVLYGPDDPTISP--SYTYYRPGVNLSLS 402
Query: 610 CNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTATNVHGMDES 669
C+ + P ++ W DGNI L IS ++ +SG+Y+C A N
Sbjct: 403 CHAASNPPAQYSWLIDGNIQQHTQE--------LFISNITEKNSGLYTCQANNSASGHSR 454
Query: 670 KGRLIVLHG---PSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMD 726
+ P + + C + + Y+W NG +
Sbjct: 455 TTVKTITVSAELPKPSISSNNSKPVEDKDAVAFTCEPEAQ---NTTYLWWVNGQSL---- 507
Query: 727 LNELETPNINI--DGGLLEITNASFADAGEYECVVKSTVGKISTKT-TVIVEGPP----G 779
+P + + L + N + DA Y C ++++V + T+ V P
Sbjct: 508 ---PVSPRLQLSNGNRTLTLFNVTRNDARAYVCGIQNSVSANRSDPVTLDVLYGPDTPII 564
Query: 780 LPGGVQVVE----------VHKTSATIQWTDGATNGRPITH 810
P + S W NG P H
Sbjct: 565 SPPDSSYLSGANLNLSCHSASNPSPQYSWR---INGIPQQH 602
Score = 210 bits (535), Expect = 7e-58
Identities = 80/439 (18%), Positives = 138/439 (31%), Gaps = 70/439 (15%)
Query: 414 GDKVRLECVAFGYPVPSYNWTRRGSPLPRNA--------------------YFENFNRIL 453
G +V L + Y+W + N L
Sbjct: 14 GKEVLLLVHNLPQHLFGYSWYKGERVDGNRQIIGYVIGTQQATPGPAYSGREIIYPNASL 73
Query: 454 TIPNVKVEDQGEYICRASN-DRSALESSVTISIQAE--PNFTIPLTDKHMDNQADLTWTC 510
I N+ D G Y D E++ + E K ++++ + +TC
Sbjct: 74 LIQNIIQNDTGFYTLHVIKSDLVNEEATGQFRVYPELPKPSISSNNSKPVEDKDAVAFTC 133
Query: 511 EAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQDNVLTIRYLNPERDPAMYQCRAKNQ 570
E TY W+ N ++LP+ + + + LT+ + D A Y+C +N
Sbjct: 134 EPETQD-ATYLWWVNN-----QSLPVSPRLQLSNGNRTLTLFNVTRN-DTASYKCETQNP 186
Query: 571 LKTRYS-SAQLRVLTLKPSFKKRPLESETYAGEGGNVTIFCNPEAAPKPKFVWKKDGNII 629
+ R S S L VL + P T G N+ + C+ + P ++ W +G
Sbjct: 187 VSARRSDSVILNVLYGPDAPTISP--LNTSYRSGENLNLSCHAASNPPAQYSWFVNGTFQ 244
Query: 630 GSGGRRKIFENGNLLISPVSRDDSGIYSCTATNVHGMDESKG--RLIVLHGPSYYEQLPP 687
S L I ++ ++SG Y+C A N + V P
Sbjct: 245 QS--------TQELFIPNITVNNSGSYTCQAHNSDTGLNRTTVTTITVYAEPPKPFITSN 296
Query: 688 K-ITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEITN 746
+ + L C + + Y+W N + +L D L + +
Sbjct: 297 NSNPVEDEDAVALTCEPEIQ---NTTYLWWVNNQSLPVSPRLQLSN-----DNRTLTLLS 348
Query: 747 ASFADAGEYECVVKSTVGKISTKT-TVIVEGPPGLP-----------GGVQVVEVHKTS- 793
+ D G YEC +++ + + + V P P G + H S
Sbjct: 349 VTRNDVGPYECGIQNELSVDHSDPVILNVLYGPDDPTISPSYTYYRPGVNLSLSCHAASN 408
Query: 794 --ATIQWTDGATNGRPITH 810
A W +G H
Sbjct: 409 PPAQYSWL---IDGNIQQH 424
Score = 108 bits (271), Expect = 2e-24
Identities = 41/249 (16%), Positives = 70/249 (28%), Gaps = 47/249 (18%)
Query: 598 TYAGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSG-------------------GRRKIF 638
EG V + + + W K + G+ GR I+
Sbjct: 9 FNVAEGKEVLLLVHNLPQHLFGYSWYKGERVDGNRQIIGYVIGTQQATPGPAYSGREIIY 68
Query: 639 ENGNLLISPVSRDDSGIYSCTATN-VHGMDESKGRLIVLH-GPSYYEQLPPKITIAAHRN 696
N +LLI + ++D+G Y+ +E+ G+ V P +
Sbjct: 69 PNASLLIQNIIQNDTGFYTLHVIKSDLVNEEATGQFRVYPELPKPSISSNNSKPVEDKDA 128
Query: 697 LQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEITNASFADAGEYE 756
+ C T+ D Y+W N L ++ L + N + D Y+
Sbjct: 129 VAFTCEPETQ---DATYLWWVNNQ-----SLPVSPRLQLSNGNRTLTLFNVTRNDTASYK 180
Query: 757 CVVKSTVG-KISTKTTVIVEGPPGLPGGV---QVVEVHKT-----------SATIQWTDG 801
C ++ V + S + V P P + A W
Sbjct: 181 CETQNPVSARRSDSVILNVLYGPDAPTISPLNTSYRSGENLNLSCHAASNPPAQYSWF-- 238
Query: 802 ATNGRPITH 810
NG
Sbjct: 239 -VNGTFQQS 246
>2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion,
membrane, development protein; HET: NAG; 1.95A
{Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A*
Length = 388
Score = 311 bits (799), Expect = 1e-97
Identities = 93/413 (22%), Positives = 153/413 (37%), Gaps = 45/413 (10%)
Query: 188 RGPYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLS 247
+GP F+K+PT+ + + + C A G P P W + D + +
Sbjct: 2 KGPVFLKEPTNRIDFSNS----TGAEIECKASGNPMPEIIWIRSD-------GTAVGDVP 50
Query: 248 DKRFTLSGGNLIIN-----DPRQVEDRGSYHCKASNKFGSIISESVQLAFGFIGEFNLKR 302
R S G L+ D RQ Y C A N+FGSIIS V + +
Sbjct: 51 GLRQISSDGKLVFPPFRAEDYRQEVHAQVYACLARNQFGSIISRDVHVRAVVAQYYEADV 110
Query: 303 APEIGNQNWGKAMFCDPPTNY--PGVNYYWARDYFPNFV---EEDKRVFVSYDGALYFSA 357
E + + C P+ W D N+ E D + V G L+
Sbjct: 111 NKEHVIRGNSAVIKCLIPSFVADFVEVVSWHTDEEENYFPGAEYDGKYLVLPSGELHIRE 170
Query: 358 LEQIDA-GNYSCNVQSKVSDTGRNGPFFPLKVF-PHSNFQQLKFPNNFPKTFPEAPKAGD 415
+ D +Y C + +++ R V + + P K P
Sbjct: 171 VGPEDGYKSYQCRTKHRLTGETRLSATKGRLVITEPISSSAPRTPALVQK--PLELMVAH 228
Query: 416 KVRLECVAFGYPVPSYNWTRRGSPLPR------NAYFENFNRILTIPNVKVEDQGEYICR 469
+ L C A G+P PS+ W + R N + + L I + VED G+Y+C
Sbjct: 229 TISLLCPAQGFPAPSFRWYKFIEGTTRKQAVVLNDRVKQVSGTLIIKDAVVEDSGKYLCV 288
Query: 470 ASNDRSALESSVTISIQAEPNFTIPLTDKHMDNQADLTWTCEAFGVPDVTYSWFRNGELL 529
+N +++ A + I + +D +TC+ G P T SW ++G+ +
Sbjct: 289 VNNSVGGESVETVLTVTAPLSAKIDPPTQTVDFGRPAVFTCQYTGNPIKTVSWMKDGKAI 348
Query: 530 NSETLPLEDQDRYFIQDNVLTIRYLNPERDPAMYQCRAKNQLKTRYSSAQLRV 582
++VL I + E D MYQC +N ++ +SA+L++
Sbjct: 349 GH-------------SESVLRIESVKKE-DKGMYQCFVRNDRESAEASAELKL 387
Score = 209 bits (533), Expect = 5e-60
Identities = 80/392 (20%), Positives = 129/392 (32%), Gaps = 46/392 (11%)
Query: 410 APKAGDKVRLECVAFGYPVPSYNWTRRG----SPLPRNAYFENFNRILTIPNVKVED--- 462
+EC A G P+P W R +P + + L P + ED
Sbjct: 15 DFSNSTGAEIECKASGNPMPEIIWIRSDGTAVGDVPGLRQISS-DGKLVFPPFRAEDYRQ 73
Query: 463 ---QGEYICRASNDRSALES-SVTISIQAEPNFTIPLTDKHMDNQADLTWTCEA---FGV 515
Y C A N ++ S V + + + +H+ C
Sbjct: 74 EVHAQVYACLARNQFGSIISRDVHVRAVVAQYYEADVNKEHVIRGNSAVIKCLIPSFVAD 133
Query: 516 PDVTYSWFRNGELLNSETLPLEDQDRYFIQDN-VLTIRYLNPERDPAMYQCRAKNQL--K 572
SW + E E +Y + + L IR + PE YQCR K++L +
Sbjct: 134 FVEVVSWHTDEEENYFP--GAEYDGKYLVLPSGELHIREVGPEDGYKSYQCRTKHRLTGE 191
Query: 573 TRYSSAQLRVLTLKPSFKKRP-----LESETYAGEGGNVTIFCNPEAAPKPKFVWKKDGN 627
TR S+ + R++ +P P ++ +++ C + P P F W K
Sbjct: 192 TRLSATKGRLVITEPISSSAPRTPALVQKPLELMVAHTISLLCPAQGFPAPSFRWYKFIE 251
Query: 628 IIGSG-----GRRKIFENGNLLISPVSRDDSGIYSCTATNVHGMDESKGRLIVLHGPSYY 682
R +G L+I +DSG Y C N G + + L V P
Sbjct: 252 GTTRKQAVVLNDRVKQVSGTLIIKDAVVEDSGKYLCVVNNSVGGESVETVLTV-TAPLSA 310
Query: 683 EQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLL 742
+ PP T+ R C + V W +G IG+ +L
Sbjct: 311 KIDPPTQTVDFGRPAVFTCQYTGNPIKTV--SWMKDGKAIGH-------------SESVL 355
Query: 743 EITNASFADAGEYECVVKSTVGKISTKTTVIV 774
I + D G Y+C V++ + +
Sbjct: 356 RIESVKKEDKGMYQCFVRNDRESAEASAELKL 387
Score = 165 bits (418), Expect = 1e-44
Identities = 62/363 (17%), Positives = 100/363 (27%), Gaps = 51/363 (14%)
Query: 486 QAEPNFTI-PLTDKHMDNQADLTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFI 544
Q P F P N C+A G P W R+ + + R
Sbjct: 1 QKGPVFLKEPTNRIDFSNSTGAEIECKASGNPMPEIIWIRS----DGTAVGDVPGLRQIS 56
Query: 545 QDNVLTIRYLNPER-----DPAMYQCRAKNQLKTRYS-SAQLRVLTLKPSFKKRPLESET 598
D L E +Y C A+NQ + S +R + ++ ++
Sbjct: 57 SDGKLVFPPFRAEDYRQEVHAQVYACLARNQFGSIISRDVHVRAVVA-QYYEADV--NKE 113
Query: 599 YAGEGGNVTIFCNPEAA---PKPKFVWKKDGNIIG-----SGGRRKIFENGNLLISPVSR 650
+ G + I C + W D G+ + +G L I V
Sbjct: 114 HVIRGNSAVIKCLIPSFVADFVEVVSWHTDEEENYFPGAEYDGKYLVLPSGELHIREVGP 173
Query: 651 DDS-GIYSCTATNVHGMDESKGRLIVL---------HGPSYYEQLPPKITIAAHRNLQLR 700
+D Y C + + P + + + + L
Sbjct: 174 EDGYKSYQCRTKHRLTGETRLSATKGRLVITEPISSSAPRTPALVQKPLELMVAHTISLL 233
Query: 701 CSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEITNASFADAGEYECVVK 760
C A W + + G L I +A D+G+Y CVV
Sbjct: 234 CPAQGFPAPSF--RWYKFIEGT-TRKQAVVLNDRVKQVSGTLIIKDAVVEDSGKYLCVVN 290
Query: 761 STVGKISTKTTVIVEGPPGLPGGVQVVEVHKTSA-------------TIQWTDGATNGRP 807
++VG S +T + V P V T+ W +G+
Sbjct: 291 NSVGGESVETVLTVTAPLSAKIDPPTQTVDFGRPAVFTCQYTGNPIKTVSWM---KDGKA 347
Query: 808 ITH 810
I H
Sbjct: 348 IGH 350
>1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A
{Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4
b.1.1.4
Length = 395
Score = 303 bits (778), Expect = 2e-94
Identities = 80/416 (19%), Positives = 139/416 (33%), Gaps = 41/416 (9%)
Query: 185 KIPRGPYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNP-SYEWFKEDYVQDRLVANLI 243
+ + P QP +V+F + N L C G Y W K+
Sbjct: 2 PVDKYPVLKDQPAEVLFREN-----NPTVLECIIEGNDQGVKYSWKKDG--------KSY 48
Query: 244 DPLSDK-RFTLSGGNLIINDPRQVEDRGSYHCKASNKFGSIISESVQLAFGFIGEFNLKR 302
+ G+L+ P+ D G Y C A G S + ++ K
Sbjct: 49 NWQEHNAALRKDEGSLVFLRPQA-SDEGHYQCFAETPAGVASSRVISFRKTYLIASPAKT 107
Query: 303 APEIGNQNWGKAMFCDPPTNYPGVNYYWARDYFP-----NFVEEDKRVFVSYDGALYFSA 357
+ + + C P YP W + + + D+R+ DG LYF+
Sbjct: 108 HEKTPIEGRPFQLDCVLPNAYPKPLITWKKRLSGADPNADVTDFDRRITAGPDGNLYFTI 167
Query: 358 LEQIDA---GNYSCNVQSKVSDTGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPEAPKAG 414
+ + D Y C ++ D + +K N P + KAG
Sbjct: 168 VTKEDVSDIYKYVCTAKNAAVDEEVVLVEYEIKGVTKDNSGYKGEPVPQYVSKDMMAKAG 227
Query: 415 DKVRLECVAFGYPVPSYNWTRRGSPLPRNA------YFENFNRILTIPNVKVEDQGEYIC 468
D + C+ P+ N+ + G + N + + L ED+G Y C
Sbjct: 228 DVTMIYCMYGSNPMGYPNYFKNGKDVNGNPEDRITRHNRTSGKRLLFKTTLPEDEGVYTC 287
Query: 469 RASNDR-SALESSVTISIQAEPNFTIPLTDK-HMDNQADLTWTCEAFGVPDVTYSWFRNG 526
N + S+ +++ + P + + D+T C+ G+P W N
Sbjct: 288 EVDNGVGKPQKHSLKLTVVSAPKYEQKPEKVIVVKQGQDVTIPCKVTGLPAPNVVWSHNA 347
Query: 527 ELLNSETLPLEDQDRYFIQDNVLTIRYLNPERDPAMYQCRAKNQLKTRYSSAQLRV 582
+ L+ R + D+ L I+ + D Y CRA N+ +Y ++V
Sbjct: 348 KPLSG--------GRATVTDSGLVIKGVKNG-DKGYYGCRATNEHGDKYFETLVQV 394
Score = 216 bits (551), Expect = 2e-62
Identities = 65/388 (16%), Positives = 110/388 (28%), Gaps = 37/388 (9%)
Query: 412 KAGDKVRLECVAFGYPVP-SYNWTRRGSPLP---RNAYFENFNRILTIPNVKVEDQGEYI 467
+ + LEC+ G Y+W + G NA L + D+G Y
Sbjct: 19 RENNPTVLECIIEGNDQGVKYSWKKDGKSYNWQEHNAALRKDEGSLVFLRPQASDEGHYQ 78
Query: 468 CRASNDRSALES-SVTISIQAEPNFTIPLTDKHMDNQADLTWTCE-AFGVPDVTYSWFRN 525
C A S ++ +K C P +W +
Sbjct: 79 CFAETPAGVASSRVISFRKTYLIASPAKTHEKTPIEGRPFQLDCVLPNAYPKPLITWKKR 138
Query: 526 GELLNSETLPLEDQDRYFIQDN-VLTIRYLNPE--RDPAMYQCRAKNQLKTRYSSAQLRV 582
+ + R + L + E D Y C AKN
Sbjct: 139 LSGADPNADVTDFDRRITAGPDGNLYFTIVTKEDVSDIYKYVCTAKNAAVDEEVVLVEYE 198
Query: 583 LTL----------KPSFKKRPLESETYAGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSG 632
+ +P + + A G I+C + P + K+G +
Sbjct: 199 IKGVTKDNSGYKGEPVPQYVS--KDMMAKAGDVTMIYCMYGSNPMGYPNYFKNGKDVNGN 256
Query: 633 GRRKI-----FENGNLLISPVSRDDSGIYSCTATNVHGMDESKG-RLIVLHGPSYYEQLP 686
+I LL +D G+Y+C N G + +L V+ P Y ++
Sbjct: 257 PEDRITRHNRTSGKRLLFKTTLPEDEGVYTCEVDNGVGKPQKHSLKLTVVSAPKYEQKPE 316
Query: 687 PKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEITN 746
I + +++ + C +W+HN + + L I
Sbjct: 317 KVIVVKQGQDVTIPCKVTGLP--APNVVWSHNAKPLSG--------GRATVTDSGLVIKG 366
Query: 747 ASFADAGEYECVVKSTVGKISTKTTVIV 774
D G Y C + G +T V V
Sbjct: 367 VKNGDKGYYGCRATNEHGDKYFETLVQV 394
Score = 202 bits (515), Expect = 2e-57
Identities = 95/386 (24%), Positives = 144/386 (37%), Gaps = 46/386 (11%)
Query: 317 CDPPTNYPGVNYYWARDYFPNFVEEDKRVFVSYDGALYFSALEQIDAGNYSCNVQSKV-S 375
C N GV Y W +D +E +G+L F + D G+Y C ++
Sbjct: 28 CIIEGNDQGVKYSWKKDGKSYNWQEHNAALRKDEGSLVFLRPQASDEGHYQCFAETPAGV 87
Query: 376 DTGRNGPFFPLKVFPHSNFQQLKFPNNFP-KTFPEAPKAGDKVRLEC-VAFGYPVPSYNW 433
+ R F + + P KT + P G +L+C + YP P W
Sbjct: 88 ASSRVISF------------RKTYLIASPAKTHEKTPIEGRPFQLDCVLPNAYPKPLITW 135
Query: 434 TRRGSPLPRNAYFENFNR--------ILTIPNVKVED---QGEYICRASN---DRSALES 479
+R S NA +F+R L V ED +Y+C A N D +
Sbjct: 136 KKRLSGADPNADVTDFDRRITAGPDGNLYFTIVTKEDVSDIYKYVCTAKNAAVDEEVVLV 195
Query: 480 SVTI--------SIQAEPNFTIPLTDKHMDNQADLTWTCEAFGVPDVTYSWFRNGELLNS 531
I + EP D C P ++F+NG+ +N
Sbjct: 196 EYEIKGVTKDNSGYKGEPVPQYVSKDMMAKAGDVTMIYCMYGSNPMGYPNYFKNGKDVNG 255
Query: 532 ETLPLEDQDRYFIQDN-VLTIRYLNPERDPAMYQCRAKNQL-KTRYSSAQLRVLTLKPSF 589
P + R+ L + PE D +Y C N + K + S +L V++ P +
Sbjct: 256 N--PEDRITRHNRTSGKRLLFKTTLPE-DEGVYTCEVDNGVGKPQKHSLKLTVVS-APKY 311
Query: 590 KKRPLESETYAGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGNLLISPVS 649
+++P E +G +VTI C P P VW + + SGGR + + L+I V
Sbjct: 312 EQKP-EKVIVVKQGQDVTIPCKVTGLPAPNVVWSHNAKPL-SGGRATV-TDSGLVIKGVK 368
Query: 650 RDDSGIYSCTATNVHGMDESKGRLIV 675
D G Y C ATN HG + + V
Sbjct: 369 NGDKGYYGCRATNEHGDKYFETLVQV 394
Score = 107 bits (269), Expect = 5e-25
Identities = 38/209 (18%), Positives = 56/209 (26%), Gaps = 11/209 (5%)
Query: 586 KPSFKKRPLESETYAGEGGNVTIFCNPEAAPKP-KFVWKKDGNII--GSGGRRKIFENGN 642
P K +P +E E + C E + K+ WKKDG + G+
Sbjct: 6 YPVLKDQP--AEVLFRENNPTVLECIIEGNDQGVKYSWKKDGKSYNWQEHNAALRKDEGS 63
Query: 643 LLISPVSRDDSGIYSCTATNVHGMDESKGRLIVLHGPSYYEQLPPKITIAAHRNLQLRCS 702
L+ D G Y C A G+ S+ + T R QL C
Sbjct: 64 LVFLRPQASDEGHYQCFAETPAGVASSRVISFRKTYLIASPAKTHEKTPIEGRPFQLDCV 123
Query: 703 AHTEELLDVAYIWTHNGVRIGNMDLNELETPNINI-DGGLLEITNASFADA---GEYECV 758
W I G L T + D +Y C
Sbjct: 124 L-PNAYPKPLITWKKRLSGADPNADVTDFDRRITAGPDGNLYFTIVTKEDVSDIYKYVCT 182
Query: 759 VKSTVG-KISTKTTVIVEGPPGLPGGVQV 786
K+ + ++G G +
Sbjct: 183 AKNAAVDEEVVLVEYEIKGVTKDNSGYKG 211
>2jll_A NCAM2, neural cell adhesion molecule 2; immunoglobulin domain,
immunoglobulin superfamily, transmembrane,
phosphoprotein, membrane, glycoprotein; HET: NAG; 2.30A
{Homo sapiens} PDB: 2xyc_A* 2jlk_A* 2doc_A
Length = 389
Score = 290 bits (745), Expect = 9e-90
Identities = 85/405 (20%), Positives = 159/405 (39%), Gaps = 37/405 (9%)
Query: 586 KPSFKKRPLESETYAGEGGNVTIFCNPEAAPKPKFVWKKDGNII-------GSGGRRKIF 638
+P + L++ET E G VT+ C+ E P P+ WK+ + GR ++
Sbjct: 1 QPHIIQ--LKNET-TYENGQVTLVCDAEGEPIPEITWKRAVDGFTFTEGDKSLDGRIEVK 57
Query: 639 E---NGNLLISPVSRDDSGIYSCTATNVHGMDESKGRLIVLHGPSYYEQLPPKITIAAHR 695
+ +L I V DSG Y C A + G + L + + P +
Sbjct: 58 GQHGSSSLHIKDVKLSDSGRYDCEAASRIGGHQKSMYLDIEYAPKF-ISNQTIYYSWEGN 116
Query: 696 NLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEITNASFADAGEY 755
+ + C + + W + + + + L+T + +LEI S D G Y
Sbjct: 117 PINISCDVKSNPPASI--HWRRDKLVLPAKNTTNLKTYSTG-RKMILEIAPTSDNDFGRY 173
Query: 756 ECVVKSTVGKISTKTTVIVEGPPGLPGGVQVVEVHKTSATIQWTD-GATNGRPITHYKII 814
C + +G + + + P P GV+++E+ +T+A + + + G PI HY++
Sbjct: 174 NCTATNHIGTRFQEYILALADVPSSPYGVKIIELSQTTAKVSFNKPDSHGGVPIHHYQVD 233
Query: 815 ARTNWNSTWFNVSEHVIGKEVDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSP 874
+ + W V H + + N L P +TYE +V A N G G+ S
Sbjct: 234 VKEVASEIWKIVRSHG---------VQTMVVLNN-LEPNTTYEIRVAAVNGKGQGDYSKI 283
Query: 875 SPQYNTPADKPYQAPSRIGGGGGKIGDLSISWEPLPREKQNAPNIYYKIFWRKKN-DTEF 933
P +P +P I G +S ++ AP + Y + +R K+ + ++
Sbjct: 284 EIFQTLPVREP--SPPSIHGQPSSGKSFKLSIT--KQDDGGAPILEYIVKYRSKDKEDQW 339
Query: 934 QSETLKEYGNVGIAVVRIPSEFYYTEYEVKVQAINDVGPGPESEV 978
+ ++ + + + YEV++ A N +G +
Sbjct: 340 LEKKVQ----GNKDHIILEHLQWTMGYEVQITAANRLGYSEPTVY 380
Score = 170 bits (433), Expect = 1e-46
Identities = 80/413 (19%), Positives = 139/413 (33%), Gaps = 57/413 (13%)
Query: 488 EPNFTIPLTDKHMDNQADLTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQDN 547
+P+ I L ++ +T C+A G P +W R + R ++
Sbjct: 1 QPHI-IQLKNETTYENGQVTLVCDAEGEPIPEITWKRAVDGFTFTEGDKSLDGRIEVKGQ 59
Query: 548 ----VLTIRYLNPERDPAMYQCRAKNQLKTRYSSAQLRVLTLKPSFKKRPLESETYAGEG 603
L I+ + D Y C A +++ S L + P F + Y+ EG
Sbjct: 60 HGSSSLHIKDVKLS-DSGRYDCEAASRIGGHQKSMYLDIEY-APKFISNQ--TIYYSWEG 115
Query: 604 GNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFE-----NGNLLISPVSRDDSGIYSC 658
+ I C+ ++ P W++D ++ + + L I+P S +D G Y+C
Sbjct: 116 NPINISCDVKSNPPASIHWRRDKLVLPAKNTTNLKTYSTGRKMILEIAPTSDNDFGRYNC 175
Query: 659 TATNVHGMDESKGRLIVLHGPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWT-- 716
TATN G + L + PS P ++ ++ V+ +
Sbjct: 176 TATNHIGTRFQEYILALADVPS-----SPY---------GVKIIELSQTTAKVS--FNKP 219
Query: 717 --HNGVRIGN-------MDLNELETPNINIDGGLLEITNASFADAGEYECVVKSTVG--- 764
H GV I + + + + ++ + N E + G
Sbjct: 220 DSHGGVPIHHYQVDVKEVASEIWKIVRSHGVQTMVVLNNLEPNTTYEIRVAAVNGKGQGD 279
Query: 765 --KISTKTTVIVEGPPGLPGGVQVVEVHKTSATIQWTDGATNGRPITHYKIIARTNWNST 822
KI T+ V P P + S + T G PI Y + R+
Sbjct: 280 YSKIEIFQTLPVR-EPS-PPSIHGQPSSGKSFKLSITKQDDGGAPILEYIVKYRSKDKED 337
Query: 823 WFNVSEHVIGKEVDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPS 875
+ E + D +E+ L YE ++ A N LGY EP+
Sbjct: 338 QWL--EKKVQGNKDHII------LEH-LQWTMGYEVQITAANRLGYSEPTVYE 381
Score = 121 bits (305), Expect = 1e-29
Identities = 41/187 (21%), Positives = 68/187 (36%), Gaps = 21/187 (11%)
Query: 412 KAGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYFENFN-RI----------LTIPNVKV 460
+V L C A G P+P W R ++ + RI L I +VK+
Sbjct: 13 YENGQVTLVCDAEGEPIPEITWKRAVDGFTFTEGDKSLDGRIEVKGQHGSSSLHIKDVKL 72
Query: 461 EDQGEYICRASNDRSALESSVTISIQAEPNFTIPLTDKHMDNQADLTWTCEAFGVPDVTY 520
D G Y C A++ + S+ + I+ P F T + + +C+ P +
Sbjct: 73 SDSGRYDCEAASRIGGHQKSMYLDIEYAPKFISNQTIYYSWEGNPINISCDVKSNPPASI 132
Query: 521 SWFRNGELLNSETLPLEDQDRYFIQD----NVLTIRYLNPERDPAMYQCRAKNQLKTRYS 576
W R+ + LP ++ +L I + D Y C A N + TR+
Sbjct: 133 HWRRDKLV-----LPAKNTTNLKTYSTGRKMILEIAPTSDN-DFGRYNCTATNHIGTRFQ 186
Query: 577 SAQLRVL 583
L +
Sbjct: 187 EYILALA 193
Score = 73.7 bits (181), Expect = 7e-14
Identities = 38/253 (15%), Positives = 66/253 (26%), Gaps = 49/253 (19%)
Query: 341 EDKRVFVSYD---GALYFSALEQIDAGNYSC---NVQSKVSDTGRNGPFFPLKVFPHSNF 394
D R+ V +L+ ++ D+G Y C + + L +
Sbjct: 50 LDGRIEVKGQHGSSSLHIKDVKLSDSGRYDCEAASRIGGHQKSMY------LDI------ 97
Query: 395 QQLKFPNNFPKTFPEAP-----KAGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYF--- 446
+ F G+ + + C P S +W R LP
Sbjct: 98 -------EYAPKFISNQTIYYSWEGNPINISCDVKSNPPASIHWRRDKLVLPAKNTTNLK 150
Query: 447 ---ENFNRILTIPNVKVEDQGEYICRASNDRSALESSVTISIQAEPNF-TIPLTDKHMDN 502
IL I D G Y C A+N +++ P+ +
Sbjct: 151 TYSTGRKMILEIAPTSDNDFGRYNCTATNHIGTRFQEYILALADVPSSPYGVKIIELSQT 210
Query: 503 QADLTWTCEAF--GVPDVTYSWFRNGELLNSETLPLEDQDRYFIQDNVLTIRYLNPERDP 560
A +++ GVP Y + ++ + L P
Sbjct: 211 TAKVSFNKPDSHGGVPIHHYQVDVKEVASEIWKIVRSH-----GVQTMVVLNNLEPNT-- 263
Query: 561 AMYQ--CRAKNQL 571
Y+ A N
Sbjct: 264 -TYEIRVAAVNGK 275
Score = 70.2 bits (172), Expect = 9e-13
Identities = 40/192 (20%), Positives = 66/192 (34%), Gaps = 24/192 (12%)
Query: 193 IKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFT 252
I Q + + +TL C A G P P W + D D D R
Sbjct: 4 IIQLKNETTYENG-----QVTLVCDAEGEPIPEITWKRAV---DGFTFTEGDKSLDGRIE 55
Query: 253 LSG----GNLIINDPRQVEDRGSYHCKASNKFGSIISE---SVQLAFGFIGEFNLKRAPE 305
+ G +L I D ++ D G Y C+A+++ G ++ A FI + + E
Sbjct: 56 VKGQHGSSSLHIKDV-KLSDSGRYDCEAASRIGGHQKSMYLDIEYAPKFISNQTIYYSWE 114
Query: 306 IGNQNWGKAMFCDPPTNYPGVNYYWARDYFPNFVEEDKRVFVSYDGA---LYFSALEQID 362
N + C + P + +W RD + + G L + D
Sbjct: 115 GNPIN----ISC-DVKSNPPASIHWRRDKLVLPAKNTTNLKTYSTGRKMILEIAPTSDND 169
Query: 363 AGNYSCNVQSKV 374
G Y+C + +
Sbjct: 170 FGRYNCTATNHI 181
Score = 56.7 bits (137), Expect = 2e-08
Identities = 21/105 (20%), Positives = 31/105 (29%), Gaps = 19/105 (18%)
Query: 190 PYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDK 249
P FI T N I +SC P S W ++ ++ +
Sbjct: 101 PKFISNQTIYYSWEG-----NPINISCDVKSNPPASIHWRRDK--------LVLPAKNTT 147
Query: 250 RFTLSG----GNLIINDPRQVEDRGSYHCKASNKFGSIISESVQL 290
L I D G Y+C A+N G+ + L
Sbjct: 148 NLKTYSTGRKMILEIAPTSD-NDFGRYNCTATNHIGT-RFQEYIL 190
>3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin
superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus
norvegicus}
Length = 403
Score = 246 bits (629), Expect = 5e-73
Identities = 97/397 (24%), Positives = 148/397 (37%), Gaps = 42/397 (10%)
Query: 406 TFPEAPK-----AGDKVRLECVAFG-YPVPSYNWTRRGSPLPRNA---YFENFNRILTIP 456
F P G V L C A VP W + G L + N L I
Sbjct: 23 HFVSEPSDAVTMRGGNVLLNCSAESDRGVPVIKWKKDGLILALGMDDRKQQLPNGSLLIQ 82
Query: 457 NV-----KVEDQGEYICRASNDR--SALESSVTISIQAEPNFTIPLTDKHMDNQADLTWT 509
N+ D+G Y C AS S + + + + F +
Sbjct: 83 NILHSRHHKPDEGLYQCEASLGDSGSIISRTAKVMVAGPLRFLSQTESITAFMGDTVLLK 142
Query: 510 CEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQDN-VLTIRYLNPERDPAMYQCRAK 568
CE G P T W +N + LN P+ R + + L I L P D +Y+C A+
Sbjct: 143 CEVIGDPMPTIHWQKNQQDLN----PIPGDSRVVVLPSGALQISRLQPG-DSGVYRCSAR 197
Query: 569 NQLKTRYS-SAQLRVLTL-----KPSFKKRPLESETYAGEGGNVTIFCNPEAAPKPKFVW 622
N TR A++R+L+ + F +RP S A EG + + C P P F W
Sbjct: 198 NPASTRTGNEAEVRILSDPGLHRQLYFLQRP--SNVIAIEGKDAVLECCVSGYPPPSFTW 255
Query: 623 KKDGNII-GSGGRRKIFENGNLLISPVSRDDSGIYSCTATNVHGMDESKGRLIVLHGPSY 681
+ +I + + NLLIS V+ DDSG Y+C T + + L V P +
Sbjct: 256 LRGEEVIQLRSKKYSLLGGSNLLISNVTDDDSGTYTCVVTYKNENISASAELTV-LVPPW 314
Query: 682 YEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINI-DGG 740
+ P + +++ C+ + + V W NG + + + I G
Sbjct: 315 FLNHPSNLYAYESMDIEFECAVSGKPVPTV--NWMKNGDVV-------IPSDYFQIVGGS 365
Query: 741 LLEITNASFADAGEYECVVKSTVGKISTKTTVIVEGP 777
L I +D G Y+CV ++ G + +IV P
Sbjct: 366 NLRILGVVKSDEGFYQCVAENEAGNAQSSAQLIVPKP 402
Score = 239 bits (611), Expect = 1e-70
Identities = 98/413 (23%), Positives = 153/413 (37%), Gaps = 47/413 (11%)
Query: 186 IPRGPYFIKQPTDVVFDLSKRSILNDITLSCYA-GGYPNPSYEWFKEDYVQDRLVANLID 244
R +F+ +P+D V ++ L+C A P +W K+ ++
Sbjct: 18 GRRSLHFVSEPSDAVTMRGG-----NVLLNCSAESDRGVPVIKWKKDG--------LILA 64
Query: 245 PLSDKRFT-LSGGNLIINDPR----QVEDRGSYHCKAS-NKFGSIISESVQLAFGFIGEF 298
D R L G+L+I + D G Y C+AS GSIIS + ++ F
Sbjct: 65 LGMDDRKQQLPNGSLLIQNILHSRHHKPDEGLYQCEASLGDSGSIISRTAKVMVAGPLRF 124
Query: 299 NLKRAPEIGNQNWGKAMFCDPPTNYPGVNYYWARDYFP-NFVEEDKRVFVSYDGALYFSA 357
+ + C P +W ++ N + D RV V GAL S
Sbjct: 125 LSQTESITAFMGDTVLLKC-EVIGDPMPTIHWQKNQQDLNPIPGDSRVVVLPSGALQISR 183
Query: 358 LEQIDAGNYSCNVQSKVSDTGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPEAPK----- 412
L+ D+G Y C+ ++ S N + P + F + P
Sbjct: 184 LQPGDSGVYRCSARNPASTRTGNEAEVRILSDP---------GLHRQLYFLQRPSNVIAI 234
Query: 413 AGDKVRLECVAFGYPVPSYNWTRRGSPLPRNA--YFENFNRILTIPNVKVEDQGEYICRA 470
G LEC GYP PS+ W R + + Y L I NV +D G Y C
Sbjct: 235 EGKDAVLECCVSGYPPPSFTWLRGEEVIQLRSKKYSLLGGSNLLISNVTDDDSGTYTCVV 294
Query: 471 SNDRSALESSVTISIQAEPNFTIPLTDKHMDNQADLTWTCEAFGVPDVTYSWFRNGELLN 530
+ + +S +++ P F ++ + D+ + C G P T +W +NG+
Sbjct: 295 TYKNENISASAELTVLVPPWFLNHPSNLYAYESMDIEFECAVSGKPVPTVNWMKNGD--- 351
Query: 531 SETLPLEDQDRYFIQDN-VLTIRYLNPERDPAMYQCRAKNQLKTRYSSAQLRV 582
+ D + I L I + D YQC A+N+ SSAQL V
Sbjct: 352 ----VVIPSDYFQIVGGSNLRILGVVKS-DEGFYQCVAENEAGNAQSSAQLIV 399
Score = 230 bits (588), Expect = 2e-67
Identities = 92/433 (21%), Positives = 152/433 (35%), Gaps = 67/433 (15%)
Query: 275 KASNKFGSI---ISESVQLAFGFIGEFNLKRAPEIGNQNWGKA--MFCDPPTNYPGVNYY 329
+ ++ S + + F+ E + G + C ++
Sbjct: 2 RWGSELESSHHHHHHGGRRSLHFVSEPSDAVTMR------GGNVLLNCSAESDRGVPVIK 55
Query: 330 WARDYFPNFVEEDKRVFVSYDGALYFSALEQI-----DAGNYSC-----NVQSKVSDTGR 379
W +D + D R +G+L + D G Y C + S +S T +
Sbjct: 56 WKKDGLILALGMDDRKQQLPNGSLLIQNILHSRHHKPDEGLYQCEASLGDSGSIISRTAK 115
Query: 380 NGPFFPLKVFPHSNFQQLKFPNNFPKTFPEAPK-----AGDKVRLECVAFGYPVPSYNWT 434
+ V P F + GD V L+C G P+P+ +W
Sbjct: 116 ------VMVA-------------GPLRFLSQTESITAFMGDTVLLKCEVIGDPMPTIHWQ 156
Query: 435 RRGSPL---PRNAYFENF-NRILTIPNVKVEDQGEYICRASND---RSALESSVTI---- 483
+ L P ++ + L I ++ D G Y C A N R+ E+ V I
Sbjct: 157 KNQQDLNPIPGDSRVVVLPSGALQISRLQPGDSGVYRCSARNPASTRTGNEAEVRILSDP 216
Query: 484 SIQAEPNFTIPLTDKHMDNQADLTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYF 543
+ + F ++ D C G P +++W R E++ + +Y
Sbjct: 217 GLHRQLYFLQRPSNVIAIEGKDAVLECCVSGYPPPSFTWLRGEEVIQLRS------KKYS 270
Query: 544 IQDN-VLTIRYLNPERDPAMYQCRAKNQLKTRYSSAQLRVLTLKPSFKKRPLESETYAGE 602
+ L I + + D Y C + + +SA+L VL P F P S YA E
Sbjct: 271 LLGGSNLLISNVTDD-DSGTYTCVVTYKNENISASAELTVLV-PPWFLNHP--SNLYAYE 326
Query: 603 GGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTATN 662
++ C P P W K+G+++ +I NL I V + D G Y C A N
Sbjct: 327 SMDIEFECAVSGKPVPTVNWMKNGDVVIPSDYFQIVGGSNLRILGVVKSDEGFYQCVAEN 386
Query: 663 VHGMDESKGRLIV 675
G +S +LIV
Sbjct: 387 EAGNAQSSAQLIV 399
Score = 193 bits (491), Expect = 4e-54
Identities = 70/370 (18%), Positives = 116/370 (31%), Gaps = 46/370 (12%)
Query: 469 RASNDRSALESSVTISIQAEPNFTIPLTDKHMDNQADLTWTCEAFGV-PDVTYSWFRNGE 527
R ++ + + +F +D ++ C A W ++G
Sbjct: 2 RWGSELESSHHHHHHGGRRSLHFVSEPSDAVTMRGGNVLLNCSAESDRGVPVIKWKKDGL 61
Query: 528 LLNSETLPLEDQDRYFIQDNVLTIRYLNPER----DPAMYQCRAK-NQLKTRYS-SAQLR 581
+L D + + + L I+ + R D +YQC A + S +A++
Sbjct: 62 ILALG----MDDRKQQLPNGSLLIQNILHSRHHKPDEGLYQCEASLGDSGSIISRTAKVM 117
Query: 582 VLTLKPSFKKRPLESETYAGEGGNVTIFCNPEAAPKPKFVWKKDGNIIG---SGGRRKIF 638
V F + A G V + C P P W+K+ + R +
Sbjct: 118 VAGP-LRFLSQT--ESITAFMGDTVLLKCEVIGDPMPTIHWQKNQQDLNPIPGDSRVVVL 174
Query: 639 ENGNLLISPVSRDDSGIYSCTATNVHGMDESKG-RLIVLHGPSYYE-----QLPPKITIA 692
+G L IS + DSG+Y C+A N + +L P + Q P +
Sbjct: 175 PSGALQISRLQPGDSGVYRCSARNPASTRTGNEAEVRILSDPGLHRQLYFLQRPSNVIAI 234
Query: 693 AHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEITNASFADA 752
++ L C W + + G L I+N + D+
Sbjct: 235 EGKDAVLECCVSGYPPPSF--TWLRGEE-----VIQLRSKKYSLLGGSNLLISNVTDDDS 287
Query: 753 GEYECVVKSTVGKISTKTTVIVEGPPGL---PGGVQVVE----------VHKTSATIQWT 799
G Y CVV IS + V PP P + E K T+ W
Sbjct: 288 GTYTCVVTYKNENISASAELTVLVPPWFLNHPSNLYAYESMDIEFECAVSGKPVPTVNWM 347
Query: 800 DGATNGRPIT 809
NG +
Sbjct: 348 ---KNGDVVI 354
Score = 146 bits (370), Expect = 4e-38
Identities = 67/317 (21%), Positives = 101/317 (31%), Gaps = 56/317 (17%)
Query: 190 PYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDK 249
F+ Q + + + L C G P P+ W K +L D
Sbjct: 122 LRFLSQTESITAFMGD-----TVLLKCEVIGDPMPTIHWQKNQ-------QDLNPIPGDS 169
Query: 250 RFT-LSGGNLIINDPRQVEDRGSYHCKASNKFGSIISESVQLAFGFIGEFNLKRAPEIGN 308
R L G L I+ + D G Y C A N + ++ + P +
Sbjct: 170 RVVVLPSGALQISRLQP-GDSGVYRCSARNPASTRTGNEAEV--------RILSDPGLHR 220
Query: 309 QNWGKAMFCDPPTNY-----------------PGVNYYWARDYFPNFVEEDKRVFVSYDG 351
+ F P+N P ++ W R K+ +
Sbjct: 221 ----QLYFLQRPSNVIAIEGKDAVLECCVSGYPPPSFTWLRGEEV-IQLRSKKYSLLGGS 275
Query: 352 ALYFSALEQIDAGNYSCNVQSKVSDTGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPEAP 411
L S + D+G Y+C V K L V F L P+N E
Sbjct: 276 NLLISNVTDDDSGTYTCVVTYKN---ENISASAELTVLVPPWF--LNHPSN--LYAYE-- 326
Query: 412 KAGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYFE-NFNRILTIPNVKVEDQGEYICRA 470
+ EC G PVP+ NW + G + + YF+ L I V D+G Y C A
Sbjct: 327 --SMDIEFECAVSGKPVPTVNWMKNGDVVIPSDYFQIVGGSNLRILGVVKSDEGFYQCVA 384
Query: 471 SNDRSALESSVTISIQA 487
N+ +SS + +
Sbjct: 385 ENEAGNAQSSAQLIVPK 401
>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain,
vegfr-2, growth factor receptor, VEGF LI
hormone-signaling protein complex, angiogenesis; 3.20A
{Homo sapiens} PDB: 3v6b_R
Length = 772
Score = 256 bits (654), Expect = 5e-73
Identities = 98/679 (14%), Positives = 181/679 (26%), Gaps = 118/679 (17%)
Query: 185 KIPRGPYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLID 244
+ R P+ + + + C +
Sbjct: 119 QDYRSPFIASVSDQHGVVYITENKNKTVVIPCLGSISNLNVSLCARYP--------EKRF 170
Query: 245 PLSDKRFTL-SGGNLIINDPRQVEDRGSYHCKASNKFGSIISESVQLAFGFIGEFNLKRA 303
R + S I + G C+A S S + +++ +
Sbjct: 171 VPDGNRISWDSKKGFTIPSY-MISYAGMVFCEAKINDESYQSIMYIVVVVGYRIYDVVLS 229
Query: 304 PE------IGNQNWGKAMF-CDPPTN-YPGVNYYWARDYFP---------NFVEEDKRVF 346
P +G K + C T G+++ W + +
Sbjct: 230 PSHGIELSVGE----KLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEM 285
Query: 347 VSYDGALYFSALEQIDAGNYSCNVQSKVSDTGRNGPFFPLKVFPHSNFQQLKFPNNFPKT 406
+ L + + D G Y+C S + ++V + F
Sbjct: 286 KKFLSTLTIDGVTRSDQGLYTCAASSGL---MTKKNSTFVRV------HEKPFVAFGSGM 336
Query: 407 FPEA-PKAGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYFENFNRILTIPNVKVEDQGE 465
G++VR+ GYP P W + G PL N + +LTI V D G
Sbjct: 337 ESLVEATVGERVRIPAKYLGYPPPEIKWYKNGIPLESNHTIKA-GHVLTIMEVSERDTGN 395
Query: 466 YICRASNDRSALESSVTISIQA------EPNFTIPLTDKHMDNQADLTWTCEAFGVPD-V 518
Y +N S + S +S+ I D + T TC + +P
Sbjct: 396 YTVILTNPISKEKQSHVVSLVVYVPPQIGEKSLISPVDSYQYGT-TQTLTCTVYAIPPPH 454
Query: 519 TYSWFRNGELLNSETLP--------------------------LEDQDRYFIQDN----V 548
W+ E + +++++ + + V
Sbjct: 455 HIHWYWQLEEECANEPSQAVSVTNPYPCEEWRSVEDFQGGNKIEVNKNQFALIEGKNKTV 514
Query: 549 LTIRYLNPERDPAMYQCRAKNQLKTRYSSAQLRVLTLKPSFKKRPLESETYAGEGGNVTI 608
T+ A+Y+C A N++ V T P +P + E +V++
Sbjct: 515 STLVIQAAN-VSALYKCEAVNKVGRGERVISFHV-TRGPEITLQP---DMQPTEQESVSL 569
Query: 609 FCNPEAAPKPKFVWKKDGNIIGSG------------------GRRKIFENGN-----LLI 645
+C + + W K G +F N + +
Sbjct: 570 WCTADRSTFENLTWYKLGPQPLPIHVGELPTPVCKNLDTLWKLNATMFSNSTNDILIMEL 629
Query: 646 SPVSRDDSGIYSCTATNVHGMDESKGRLIVL---HGPSYYEQLPPKITIAAHRNLQLRCS 702
S D G Y C A + + T + ++++ C+
Sbjct: 630 KNASLQDQGDYVCLAQDRKTKKRHCVVRQLTVLERVAPTITGNLENQTTSIGESIEVSCT 689
Query: 703 AHTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEITNASFADAGEYECVVKST 762
A + +W + + E + L I D G Y C S
Sbjct: 690 ASGNPPPQI--MWFKDNETL-----VEDSGIVLKDGNRNLTIRRVRKEDEGLYTCQACSV 742
Query: 763 VGKISTKTTVIVEGPPGLP 781
+G + I+EG
Sbjct: 743 LGCAKVEAFFIIEGAQEKT 761
Score = 243 bits (620), Expect = 2e-68
Identities = 113/722 (15%), Positives = 196/722 (27%), Gaps = 141/722 (19%)
Query: 187 PRGPYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPL 246
P Q + + + ++C G + + W ++ V
Sbjct: 29 LDLPRLSIQKDILTIKAN-----TTLQITCR--GQRDLDWLWPNNQSGSEQRVEVTECSD 81
Query: 247 SDKRFTLSGGNLIINDPRQVEDRGSYHCKASNKFG--SIISESVQLAFGFIGEFNLKRAP 304
TL I D G+Y C I FI + +
Sbjct: 82 GLFCKTL-----TIPKV-IGNDTGAYKCFYRETDLASVIYVYVQDYRSPFIASVSDQHGV 135
Query: 305 EIGNQNWGKAMF--CDPPTNYPGVNYYWARDYFPNFVEEDKRVFVSYDGALYFSALEQID 362
+N K + C + V+ R FV + R+ +
Sbjct: 136 VYITENKNKTVVIPCLGSISNLNVSLCA-RYPEKRFVPDGNRISWDSKKGFTIPSYMISY 194
Query: 363 AGNYSCNVQSKVSDTGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPEAPK-----AGDKV 417
AG C + + + + + G+K+
Sbjct: 195 AGMVFCEAKIND------------ESYQSIMYIVVVVGYRIYDVVLSPSHGIELSVGEKL 242
Query: 418 RLECVAFGYPVPSYNWT--------------RRGSPLPRNAYFENFNRILTIPNVKVEDQ 463
L C A ++ R + + F LTI V DQ
Sbjct: 243 VLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLSTLTIDGVTRSDQ 302
Query: 464 GEYICRASNDRSALESSVTISIQAEPNFTIPLTDKHMDNQA---DLTWTCEAFGVPDVTY 520
G Y C AS+ ++S + + +P + + + + G P
Sbjct: 303 GLYTCAASSGLMTKKNSTFVRVHEKPFVAFGSGMESLVEATVGERVRIPAKYLGYPPPEI 362
Query: 521 SWFRNGELLNSETLPLEDQDRYFIQDNVLTIRYLNPERDPAMYQCRAKNQLKTRYSSAQL 580
W++NG L S + +VLTI ++ D Y N + S +
Sbjct: 363 KWYKNGIPLES--------NHTIKAGHVLTIMEVSER-DTGNYTVILTNPISKEKQSHVV 413
Query: 581 RVL-TLKPSFKKRPLES-ETYAGEGGNVTIFCNPEAAPKPKFV-WKKDGN---------- 627
++ + P ++ L S G T+ C A P P + W
Sbjct: 414 SLVVYVPPQIGEKSLISPVDSYQYGTTQTLTCTVYAIPPPHHIHWYWQLEEECANEPSQA 473
Query: 628 -----------------------IIGSGGRRKIFENGN---LLISPVSRDDSGIYSCTAT 661
I + + + E N + + + S +Y C A
Sbjct: 474 VSVTNPYPCEEWRSVEDFQGGNKIEVNKNQFALIEGKNKTVSTLVIQAANVSALYKCEAV 533
Query: 662 NVHGMDESKGRLIVLHGPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVR 721
N G E V GP L P + ++ L C+A ++ W G +
Sbjct: 534 NKVGRGERVISFHVTRGPEI--TLQPDMQPTEQESVSLWCTADRSTFENL--TWYKLGPQ 589
Query: 722 IGNMDLNELETP-----------------NINIDGGLLEITNASFADAGEYECVVKSTVG 764
+ + EL TP N D ++E+ NAS D G+Y C+ +
Sbjct: 590 PLPIHVGELPTPVCKNLDTLWKLNATMFSNSTNDILIMELKNASLQDQGDYVCLAQDRKT 649
Query: 765 KISTKT----TVIVEGPPGLPGGVQVVEVHKTS-------------ATIQWTDGATNGRP 807
K TV+ P + G ++ I W +
Sbjct: 650 KKRHCVVRQLTVLERVAPTITGNLENQTTSIGESIEVSCTASGNPPPQIMWF---KDNET 706
Query: 808 IT 809
+
Sbjct: 707 LV 708
Score = 226 bits (578), Expect = 9e-63
Identities = 87/598 (14%), Positives = 173/598 (28%), Gaps = 97/598 (16%)
Query: 155 FICEASIQKLHYLLNDDRTYQYGMDIENPDKIPRGPYFIKQPTDVVFDLSKRSILNDITL 214
CEA +D +YQ M I + + + + L
Sbjct: 198 VFCEAK--------INDESYQSIMYIVVVVGYRIYDVVLSPSHGIELSVG-----EKLVL 244
Query: 215 SCYAGGYPNPSYEWFK----EDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVEDRG 270
+C A N ++ + +LV + S L I+ D+G
Sbjct: 245 NCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLSTLTIDGV-TRSDQG 303
Query: 271 SYHCKASNKFGSIISESVQLAFGFIGEFNLK-RAPEIGNQNWGKA--MFCDPPTNYPGVN 327
Y C AS+ + S + + G+ + YP
Sbjct: 304 LYTCAASSGLMTK-KNSTFVRVHEKPFVAFGSGMESLVEATVGERVRIPA-KYLGYPPPE 361
Query: 328 YYWARDYFPNFVEEDKRVFVSYDGALYFSALEQIDAGNYSCNVQSKVSDTGRNGPFFPLK 387
W ++ P +E + + L + + D GNY+ + + +S ++ L
Sbjct: 362 IKWYKNGIP--LESNHTIK--AGHVLTIMEVSERDTGNYTVILTNPISKEKQSHVVS-LV 416
Query: 388 VFPHSNFQQLKFPNNFPKTFPEAPKAGDKVRLECVAFGYPVP-SYNWTRRGSPLPRNA-- 444
V+ + + ++ + G L C + P P +W + N
Sbjct: 417 VYVPP-----QIGEKSLISPVDSYQYGTTQTLTCTVYAIPPPHHIHWYWQLEEECANEPS 471
Query: 445 -----------------------------------YFENFNRILTIPNVKVEDQGEYICR 469
+ T+ Y C
Sbjct: 472 QAVSVTNPYPCEEWRSVEDFQGGNKIEVNKNQFALIEGKNKTVSTLVIQAANVSALYKCE 531
Query: 470 ASNDRSALESSVTISIQAEPNFTIPLTDKHMDNQADLTWTCEAFGVPDVTYSWFRNGELL 529
A N E ++ + P T+ + + + ++ C A +W++ G
Sbjct: 532 AVNKVGRGERVISFHVTRGPEITLQPDMQPTEQE-SVSLWCTADRSTFENLTWYKLGPQP 590
Query: 530 -----NSETLPLEDQDRYFIQDN------------VLTIRYLNPERDPAMYQCRAKNQLK 572
P+ + N ++ ++ + + D Y C A+++
Sbjct: 591 LPIHVGELPTPVCKNLDTLWKLNATMFSNSTNDILIMELKNASLQ-DQGDYVCLAQDRKT 649
Query: 573 TRYSSAQLRVLTL---KPSFKKRPLESETYAGEGGNVTIFCNPEAAPKPKFVWKKDGNII 629
+ ++ L P+ G ++ + C P P+ +W KD +
Sbjct: 650 KKRHCVVRQLTVLERVAPTITGNL--ENQTTSIGESIEVSCTASGNPPPQIMWFKDNETL 707
Query: 630 GSGGRRKI-FENGNLLISPVSRDDSGIYSCTATNVHGMDESKGRLIVLHGPSYYEQLP 686
+ N NL I V ++D G+Y+C A +V G + + I+ G L
Sbjct: 708 VEDSGIVLKDGNRNLTIRRVRKEDEGLYTCQACSVLGCAKVEAFFII-EGAQEKTNLE 764
Score = 208 bits (531), Expect = 1e-56
Identities = 93/647 (14%), Positives = 170/647 (26%), Gaps = 95/647 (14%)
Query: 264 RQVEDRGSYHCKASNKFGSIISESVQLAFGFIGEFNLKRAPEIGNQNWGKAMFC----DP 319
+ + + C + + SV L + +I +
Sbjct: 4 KVLLAVALWLCVETRAASVGLP-SVSLDLPRL-----SIQKDILTIKANTTLQITCRGQR 57
Query: 320 PTNYPGVNYYWARDYFPNFVEEDKRVFVSYDGA----LYFSALEQIDAGNYSC---NVQS 372
+++ W + + E+ V DG L + D G Y C
Sbjct: 58 D-----LDWLWPNN--QSGSEQRVEVTECSDGLFCKTLTIPKVIGNDTGAYKCFYRETDL 110
Query: 373 KVSDTGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPEAPKAGDKVRLECVAFG--YPVPS 430
+ + S+ + + V + C+ V
Sbjct: 111 ASVIYVYVQDYRSPFIASVSDQHGVVYI---------TENKNKTVVIPCLGSISNLNVSL 161
Query: 431 YNWTRRGSPLPRNA-YFENFNRILTIPNVKVEDQGEYICRASNDRSALESSVTISIQAEP 489
+P + + TIP+ + G C A + + +S + I +
Sbjct: 162 CARYPEKRFVPDGNRISWDSKKGFTIPSYMISYAGMVFCEAKINDESYQSIMYIVVVVGY 221
Query: 490 NFTIPLTDKHMDNQA----DLTWTCEAFGVPD--VTYSWFRNGELLNSETLPLEDQ---- 539
+ + L C A + + ++W + L D
Sbjct: 222 RIYDVVLSPSHGIELSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQS 281
Query: 540 -DRYFIQDNVLTIRYLNPERDPAMYQCRAKNQLKTRYSSAQLRVLTLKPSFKKRPLESET 598
+ LTI + D +Y C A + L T+ +S +RV +ES
Sbjct: 282 GSEMKKFLSTLTIDGVTRS-DQGLYTCAASSGLMTKKNSTFVRVHEKPFVAFGSGMESLV 340
Query: 599 YAGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSC 658
A G V I P P+ W K+G + S I L I VS D+G Y+
Sbjct: 341 EATVGERVRIPAKYLGYPPPEIKWYKNGIPLES--NHTIKAGHVLTIMEVSERDTGNYTV 398
Query: 659 TATNVHGMDESKG--RLIVLHGPSYYEQ--LPPKITIAAHRNLQLRCSAH---------- 704
TN ++ L+V P E+ + P + L C+ +
Sbjct: 399 ILTNPISKEKQSHVVSLVVYVPPQIGEKSLISPVDSYQYGTTQTLTCTVYAIPPPHHIHW 458
Query: 705 ----------------TEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGG---LLEIT 745
+ W G + + I+G + +
Sbjct: 459 YWQLEEECANEPSQAVSVTNPYPCEEWRSVEDFQGGNKIEVNKNQFALIEGKNKTVSTLV 518
Query: 746 NASFADAGEYECVVKSTVGKISTKTTVIVEGPP--GLPGGVQVVEVHKTS---------- 793
+ + Y+C + VG+ + V P L +Q E S
Sbjct: 519 IQAANVSALYKCEAVNKVGRGERVISFHVTRGPEITLQPDMQPTEQESVSLWCTADRSTF 578
Query: 794 ATIQWTDGATNGRPITHYKIIARTNWNSTWFNVSEHVIGKEVDRYTG 840
+ W PI ++ N +
Sbjct: 579 ENLTWYKLGPQPLPIHVGELPTPVCKNLDTLWKLNATMFSNSTNDIL 625
Score = 168 bits (426), Expect = 3e-43
Identities = 64/383 (16%), Positives = 113/383 (29%), Gaps = 39/383 (10%)
Query: 455 IPNVKVEDQGEYICRASNDRSALESSVTISIQAEPNFTIPLTDKHMDNQADLTWTCEAFG 514
+ + + ++C + S SV++ + P +I + L TC G
Sbjct: 1 MQSKVLLAVALWLCVETRAASVGLPSVSLDL---PRLSIQKDILTIKANTTLQITCR--G 55
Query: 515 VPDVTYSWFRNGELLNSETLPLEDQDRYFIQDNVLTIRYLNPERDPAMYQCRAKNQLKTR 574
D+ + W N E D F + LTI + D Y+C +
Sbjct: 56 QRDLDWLWPNNQSGSEQRVEVTECSDGLFCK--TLTIPKVIGN-DTGAYKCFYRETDLAS 112
Query: 575 YSSAQLRVLTLKPSFKKRPLESETY--AGEGGNVTIFCNPEAAPKP--KFVWKKDGNIIG 630
++ Y + V I C + + +
Sbjct: 113 VIYVYVQDYRSPFIASVSDQHGVVYITENKNKTVVIPCLGSISNLNVSLCARYPEKRFVP 172
Query: 631 SGGRRKIFENGNLLISPVSRDDSGIYSCTATNVHGMDESKGRLIVLHGPSYYEQL---PP 687
G R I +G+ C A +S ++V+ G Y+ +
Sbjct: 173 DGNRISWDSKKGFTIPSYMISYAGMVFCEAKINDESYQSIMYIVVVVGYRIYDVVLSPSH 232
Query: 688 KITIAAHRNLQLRCSAHTEELLDVAYIWTHNGV-----RIGNMDLNELETPNINIDGGLL 742
I ++ L L C+A TE + + + W + ++ N DL + L
Sbjct: 233 GIELSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLSTL 292
Query: 743 EITNASFADAGEYECVVKSTVGKISTKTTVIVEGPPGLP-----GGVQVVEVHKT----- 792
I + +D G Y C S + T V V P + + V +
Sbjct: 293 TIDGVTRSDQGLYTCAASSGLMTKKNSTFVRVHEKPFVAFGSGMESLVEATVGERVRIPA 352
Query: 793 ------SATIQWTDGATNGRPIT 809
I+W NG P+
Sbjct: 353 KYLGYPPPEIKWY---KNGIPLE 372
Score = 110 bits (275), Expect = 9e-25
Identities = 56/351 (15%), Positives = 98/351 (27%), Gaps = 77/351 (21%)
Query: 210 NDITLSCYAGGYPNP-SYEWFKED------------------------YVQDRLVANLID 244
TL+C P P W+ + V+D N I+
Sbjct: 439 TTQTLTCTVYAIPPPHHIHWYWQLEEECANEPSQAVSVTNPYPCEEWRSVEDFQGGNKIE 498
Query: 245 PLSDKRFTLSGGNLIIN--DPRQVEDRGSYHCKASNKFGS---------------IISES 287
++ + G N ++ + Y C+A NK G +
Sbjct: 499 VNKNQFALIEGKNKTVSTLVIQAANVSALYKCEAVNKVGRGERVISFHVTRGPEITLQPD 558
Query: 288 VQLAFG----FIGEFNLKRAPEI-----GNQNWGKAMFCDPPTNYPGVNYYWARDYFPNF 338
+Q + + G Q + P ++ W +
Sbjct: 559 MQPTEQESVSLWCTADRSTFENLTWYKLGPQPLPIHVGELPTPVCKNLDTLWKLNATMFS 618
Query: 339 VEEDKRVFVSYDGALYFSALEQIDAGNYSCNVQSKVSDTGRNGPFFPLKVFPHSNFQQLK 398
+ + D G+Y C Q + + H +QL
Sbjct: 619 NSTN------DILIMELKNASLQDQGDYVCLAQDRKTKKR------------HCVVRQLT 660
Query: 399 FPNNFPKTFPEAPK-----AGDKVRLECVAFGYPVPSYNWTRRGSPLPRNA--YFENFNR 451
T + G+ + + C A G P P W + L ++ ++ NR
Sbjct: 661 VLERVAPTITGNLENQTTSIGESIEVSCTASGNPPPQIMWFKDNETLVEDSGIVLKDGNR 720
Query: 452 ILTIPNVKVEDQGEYICRASNDRSALESSVTISIQAEPNFT-IPLTDKHMD 501
LTI V+ ED+G Y C+A + + I+ T + T H
Sbjct: 721 NLTIRRVRKEDEGLYTCQACSVLGCAKVEAFFIIEGAQEKTNLERTHHHHH 771
>3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical
bundle cytokine, CY receptor complex, extracellular
complex; HET: NAG; 4.30A {Homo sapiens}
Length = 423
Score = 238 bits (607), Expect = 7e-70
Identities = 57/435 (13%), Positives = 123/435 (28%), Gaps = 42/435 (9%)
Query: 362 DAGNYSCNVQS-KVSDTGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPEAP----KAGDK 416
D C + + K +D+ V T EA
Sbjct: 6 DLPVIKCVLINHKNNDSSVGKSSSYPMVSESPEDLGCALRPQSSGTVYEAAAVEVDVSAS 65
Query: 417 VRLECVAFGYPVPSYNWTRRGSPLPRNAYFENFNR---ILTIPNVKVEDQGEYICRASND 473
+ L+ + S W + S L +F+ NR + I + GEY+ ++
Sbjct: 66 ITLQVLVDAPGNISCLWVFKHSSLNCQPHFDLQNRGVVSMVILKMTETQAGEYLLFIQSE 125
Query: 474 RSALESSVTISIQAEPNFTIPLTDKHMDNQADLTWTCEAFGVPDVTYSWFRNGELLNSET 533
+ T+SI+ +T+ D C + VP+ W S+
Sbjct: 126 ATNYTILFTVSIRNTLLYTLRRPYFRKMENQD-ALVCISESVPEPIVEWVLCD----SQG 180
Query: 534 LPLEDQDRYFIQDNVLTIRYLNPERDPAMYQCRAKNQLKTRYSSAQLRVLTLKPSFKKRP 593
+++ ++ + E +C A+N+L + L P
Sbjct: 181 ESCKEESPAVVKKEEKVLH----ELFGTDIRCCARNELGRECTRLFTIDLNQTPQTTL-- 234
Query: 594 LESETYAGEGGNVTIFCNP-EAAPKPKFVWKKDGNIIGSGGRRKI---------FENGNL 643
+ + G + I C W+ + + G ++
Sbjct: 235 --PQLFLKVGEPLWIRCKAVHVNHGFGLTWELENKALEEGNYFEMSTYSTNRTMIRILFA 292
Query: 644 LISPVSRDDSGIYSCTATNVHGMDESKGRLIVLHGPSYYEQLPPKITIAAHRNLQLRCSA 703
+S V+R+D+G Y+C+++ + ++ + + + S
Sbjct: 293 FVSSVARNDTGYYTCSSSKHPS---QSALVTIVE-KGFINATNSSEDYEIDQYEEFCFSV 348
Query: 704 HTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEITNASFADAGEYECVVKSTV 763
+ + WT + +G + GEY ++
Sbjct: 349 RFKAYPQIRCTWTFSRKSFPC-------EQKGLDNGYSISKFCNHKHQPGEYIFHAENDD 401
Query: 764 GKISTKTTVIVEGPP 778
+ + T+ +
Sbjct: 402 AQFTKMFTLNIRSGT 416
Score = 205 bits (523), Expect = 2e-58
Identities = 53/444 (11%), Positives = 110/444 (24%), Gaps = 42/444 (9%)
Query: 257 NLIINDPRQVEDRGSYHCKASNKFGSIISESVQLAFGFIGEFNLKRAPEIGNQNWGKAMF 316
N ND V SY + + + Q + G + E ++
Sbjct: 16 NHKNND-SSVGKSSSYPMVSESPEDLGCALRPQSS-GTVYEAAAVEVDV------SASIT 67
Query: 317 --CDPPTNYPGVNYYWARDYFPNFVEEDKRVFVSYDGALYFSALEQIDAGNYSCNVQSKV 374
++ W + + + ++ + + AG Y +QS+
Sbjct: 68 LQV-LVDAPGNISCLWVFKHSSLNCQPHFDLQNRGVVSMVILKMTETQAGEYLLFIQSEA 126
Query: 375 SDTGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPEAPKAGDKVRLECVAFGYPVPSYNWT 434
F + + + + P K ++ L C++ P P W
Sbjct: 127 ---TNYTILFTVSI---------RNTLLYTLRRPYFRKMENQDALVCISESVPEPIVEWV 174
Query: 435 RRGSPLPRNAYFENFNRILTIPNVKVEDQGEYICRASNDRSALESSVTISIQAEPNFTIP 494
S + + C A N+ E + +I
Sbjct: 175 LCDSQGESCKEESPAVVKKEEKVLHELFGTDIRCCARNEL-GRECTRLFTIDLNQTPQTT 233
Query: 495 LTDKHMDNQADLTWTCEA-FGVPDVTYSWFRNGELLNSET---LPLEDQDRYFIQDNVLT 550
L + L C+A +W + L + +R I+
Sbjct: 234 LPQLFLKVGEPLWIRCKAVHVNHGFGLTWELENKALEEGNYFEMSTYSTNRTMIRILFAF 293
Query: 551 IRYLNPERDPAMYQCRAKNQLKTRYSSAQLRVLTLKPSFKKRPLESETYAGEGGNVTIFC 610
+ + D Y C + SA + ++ K + +
Sbjct: 294 VSSVARN-DTGYYTCSSSKHPS---QSALVTIVE-KGFINATNSSEDYEIDQYEEFCFSV 348
Query: 611 NPEAAPKPKFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTATNVHGMDESK 670
+A P+ + W ++ + ++ + G Y A N
Sbjct: 349 RFKAYPQIRCTWTFSRKSF-PCEQKGLDNGYSISKFCNHKHQPGEYIFHAENDDAQFTKM 407
Query: 671 GRLIVLHGPSYYEQLPPKITIAAH 694
L + + K H
Sbjct: 408 FTLNI--------RSGTKHHHHHH 423
Score = 169 bits (429), Expect = 9e-46
Identities = 52/413 (12%), Positives = 107/413 (25%), Gaps = 63/413 (15%)
Query: 187 PRGPYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPL 246
P+ + + V D+S ITL N S W + ++L
Sbjct: 46 PQSSGTVYEAAAVEVDVSA-----SITLQVLVDAPGNISCLWVFKH-------SSLNCQP 93
Query: 247 SDKRFTLSGGNLIINDPRQVEDRGSYHCKASNKFGSIISE---SVQLAFGFIGEFNLKRA 303
+++I G Y ++ + S++ + R
Sbjct: 94 HFDLQNRGVVSMVILKM-TETQAGEYLLFIQSEATNYTILFTVSIRNTLLYTLRRPYFRK 152
Query: 304 PEIGNQNWGKAMFCDPPTNYPGVNYYWARDYFPNFVEEDKRVFVSYDGALYFSALEQIDA 363
E + + P W +++ V ++
Sbjct: 153 ME------NQDALVCISESVPEPIVEWVLCDSQGESCKEESPAVVKKEEKVLH---ELFG 203
Query: 364 GNYSCNVQSKVSDTGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPE-APKAGDKVRLECV 422
+ C ++++ GR + + T P+ K G+ + + C
Sbjct: 204 TDIRCCARNEL---GRE----------CTRLFTIDLNQTPQTTLPQLFLKVGEPLWIRCK 250
Query: 423 A-FGYPVPSYNWTRRGSPLPRNAYFENF----------NRILTIPNVKVEDQGEYICRAS 471
A W L YFE + +V D G Y C +S
Sbjct: 251 AVHVNHGFGLTWELENKALEEGNYFEMSTYSTNRTMIRILFAFVSSVARNDTGYYTCSSS 310
Query: 472 NDRSALESSVTISIQAEPNFTIPL--TDKHMDNQADLTWTCEAFGVPDVTYSWFRNGELL 529
S S ++I + D +D + ++ P + +W + +
Sbjct: 311 KHPS---QSALVTIVEKGFINATNSSEDYEIDQYEEFCFSVRFKAYPQIRCTWTFSRK-- 365
Query: 530 NSETLPLEDQDRYFIQDNVLTIRYLNPERDPAMYQCRAKNQLKTRYSSAQLRV 582
+ + ++ + P Y A+N L +
Sbjct: 366 -----SFPCEQKGLDNGYSISKFCNHKH-QPGEYIFHAENDDAQFTKMFTLNI 412
Score = 135 bits (340), Expect = 4e-34
Identities = 42/317 (13%), Positives = 83/317 (26%), Gaps = 48/317 (15%)
Query: 185 KIPRGPYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLID 244
I + + R + N L C + P P EW D +
Sbjct: 136 SIRNTLLYTLRRPYF------RKMENQDALVCISESVPEPIVEWVLCD-------SQGES 182
Query: 245 PLSDKRFTLSGGNLIINDPRQVEDRGSYHCKASNKFGSIISE--SVQLAFGFIGEFNLKR 302
+ + ++++ C A N+ G + ++ L
Sbjct: 183 CKEESPAVVKKEEKVLHE----LFGTDIRCCARNELGRECTRLFTIDLNQTPQTTLPQLF 238
Query: 303 APEIGNQNWGKAMF--CDPPTNYPGVNYYWARD--------YFPNFVEEDKRVFVSYDGA 352
G+ ++ C G W + YF R +
Sbjct: 239 LKV------GEPLWIRCKAVHVNHGFGLTWELENKALEEGNYFEMSTYSTNRTMIR-ILF 291
Query: 353 LYFSALEQIDAGNYSCNVQSKVSDTGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPEAPK 412
+ S++ + D G Y+C+ S + + + ++
Sbjct: 292 AFVSSVARNDTGYYTCSSSKHPSQSAL------VTIVEKGFINATNSSEDYEI------D 339
Query: 413 AGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYFENFNRILTIPNVKVEDQGEYICRASN 472
++ YP WT P + ++ GEYI A N
Sbjct: 340 QYEEFCFSVRFKAYPQIRCTWTFSRKSFPCEQKGLDNGYSISKFCNHKHQPGEYIFHAEN 399
Query: 473 DRSALESSVTISIQAEP 489
D + T++I++
Sbjct: 400 DDAQFTKMFTLNIRSGT 416
Score = 79.3 bits (195), Expect = 1e-15
Identities = 29/227 (12%), Positives = 57/227 (25%), Gaps = 26/227 (11%)
Query: 642 NLLISPVSRDDSGIYSCTATNVHGMDESKGRLIVLHGPSYYEQLPPKITIAAHRNLQLRC 701
N + S S Y + + + L + YE + + ++ L+
Sbjct: 16 NHKNNDSSVGKSSSYPMVSESPEDLG---CALRPQSSGTVYE--AAAVEVDVSASITLQV 70
Query: 702 SAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEITNASFADAGEYECVVKS 761
+ +W + +L+ N + I + AGEY ++S
Sbjct: 71 LVDAPGNISC--LWVFKHSSLNCQPHFDLQ----NRGVVSMVILKMTETQAGEYLLFIQS 124
Query: 762 TVGKISTKTTVIVEGPPGLPGGVQVVEVHKTSATIQWTDGATNGRPITHYKIIARTNWNS 821
+ TV + + + + P
Sbjct: 125 EATNYTILFTVSIRNTLLYTLRRPYFRKMENQDALVCI---SESVPEPIV---------- 171
Query: 822 TWFNVSEHVIGKEVDRYTGRKEASIENVLVPWSTYEFKVIAGNELGY 868
W + + E VL + + A NELG
Sbjct: 172 EWVLCDSQGESCKEESP--AVVKKEEKVLHELFGTDIRCCARNELGR 216
>2wim_A N-CAM 2, NCAM2, neural cell adhesion molecule 2; cell membrane,
transmembrane, immunoglobulin; HET: NDG NAG; 3.00A {Homo
sapiens}
Length = 291
Score = 229 bits (586), Expect = 2e-68
Identities = 59/285 (20%), Positives = 103/285 (36%), Gaps = 22/285 (7%)
Query: 413 AGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYF----ENFNRILTIPNVKVEDQGEYIC 468
G+ C A G P + +G + E LTI N +ED G Y C
Sbjct: 18 VGESKFFTCTAIGEPESIDWYNPQGEKIISTQRVVVQKEGVRSRLTIYNANIEDAGIYRC 77
Query: 469 RASNDR-SALESSVTISIQAEPNFTIPLTDKHMDNQADLTWTCEAFGVPDVTYSWFRNGE 527
+A++ + E++V + I + F ++ + D C P SW + E
Sbjct: 78 QATDAKGQTQEATVVLEIYQKLTFREVVSPQEFKQGEDAEVVCRVSSSPAPAVSWLYHNE 137
Query: 528 LLNSETLPLEDQDRYFI-QDNVLTIRYLNPERDPAMYQCRAKNQ-LKTRYSSAQLRVLTL 585
+ +R+ + +N L I +N D +Y+C + + + ++ +
Sbjct: 138 -----EVTTISDNRFAMLANNNLQILNINKS-DEGIYRCEGRVEARGEIDFRDIIVIVNV 191
Query: 586 KPSFKKRPLESETYAGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKI-FENGNLL 644
P+ A G +T C +P+P W ++G +I + + N L
Sbjct: 192 PPAISMPQKSFNATAERGEEMTFSCRASGSPEPAISWFRNGKLIEENEKYILKGSNTELT 251
Query: 645 ISPVSRDDSGIYSCTATNVHGMDESKGRLIVLHGPSYYEQLPPKI 689
+ + D G Y C ATN G DE + L V +
Sbjct: 252 VRNIINSDGGPYVCRATNKAGEDEKQAFLQV--------FVQHHH 288
Score = 173 bits (441), Expect = 1e-48
Identities = 61/304 (20%), Positives = 103/304 (33%), Gaps = 32/304 (10%)
Query: 487 AEPNFTIPLTDKHMDNQADLTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQD 546
A TI L+ + +TC A G P+ + GE + R +Q
Sbjct: 3 ALLQVTISLSKVELSVGESKFFTCTAIGEPESIDWYNPQGE-------KIISTQRVVVQK 55
Query: 547 N----VLTIRYLNPERDPAMYQCRAKNQLKTRYS-SAQLRVLTLKPSFKKRPLESETYAG 601
LTI N E D +Y+C+A + + L + K +F++ S
Sbjct: 56 EGVRSRLTIYNANIE-DAGIYRCQATDAKGQTQEATVVLEIYQ-KLTFREVV--SPQEFK 111
Query: 602 EGGNVTIFCNPEAAPKPKFVWKKDGNII--GSGGRRKIFENGNLLISPVSRDDSGIYSCT 659
+G + + C ++P P W + S R + N NL I +++ D GIY C
Sbjct: 112 QGEDAEVVCRVSSSPAPAVSWLYHNEEVTTISDNRFAMLANNNLQILNINKSDEGIYRCE 171
Query: 660 ATN-VHGMDESKGRLIVLHGPSYYEQLPPKITIAAHRN--LQLRCSAHTEELLDVAYIWT 716
G + + +++++ P A R + C A + W
Sbjct: 172 GRVEARGEIDFRDIIVIVNVPPAISMPQKSFNATAERGEEMTFSCRASGSPEPAI--SWF 229
Query: 717 HNGVRIGNMDLNELETPNINI--DGGLLEITNASFADAGEYECVVKSTVGKISTKTTVIV 774
NG I E + L + N +D G Y C + G+ + + V
Sbjct: 230 RNGKLI-------EENEKYILKGSNTELTVRNIINSDGGPYVCRATNKAGEDEKQAFLQV 282
Query: 775 EGPP 778
Sbjct: 283 FVQH 286
Score = 140 bits (355), Expect = 4e-37
Identities = 54/324 (16%), Positives = 96/324 (29%), Gaps = 62/324 (19%)
Query: 190 PYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDK 249
+ V + + +C A G P S +W+ + +
Sbjct: 5 LQVTISLSKVELSVGE-----SKFFTCTAIGEP-ESIDWYNPQ--------GEKIISTQR 50
Query: 250 RFTLSGGN---LIINDPRQVEDRGSYHCKASNKFGSIISESVQLAFGFIGEFNLKRAPEI 306
G L I + +ED G Y C+A++ G +V L + +
Sbjct: 51 VVVQKEGVRSRLTIYNA-NIEDAGIYRCQATDAKGQTQEATVVL--------EIYQKLT- 100
Query: 307 GNQNWGKAMFCDPPTN-----------------YPGVNYYWARDYFPNFVEEDKRVFVSY 349
F + + P W D R +
Sbjct: 101 ---------FREVVSPQEFKQGEDAEVVCRVSSSPAPAVSWLYHNEEVTTISDNRFAMLA 151
Query: 350 DGALYFSALEQIDAGNYSCNVQSKVSDTGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPE 409
+ L + + D G Y C + + + V + N T
Sbjct: 152 NNNLQILNINKSDEGIYRCEGRVEARGEIDFRDII-VIVNVPPAISMPQKSFN--ATAER 208
Query: 410 APKAGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYF--ENFNRILTIPNVKVEDQGEYI 467
G+++ C A G P P+ +W R G + N + + N LT+ N+ D G Y+
Sbjct: 209 ----GEEMTFSCRASGSPEPAISWFRNGKLIEENEKYILKGSNTELTVRNIINSDGGPYV 264
Query: 468 CRASNDRSALESSVTISIQAEPNF 491
CRA+N E + + + +
Sbjct: 265 CRATNKAGEDEKQAFLQVFVQHHH 288
Score = 136 bits (345), Expect = 8e-36
Identities = 56/268 (20%), Positives = 96/268 (35%), Gaps = 41/268 (15%)
Query: 339 VEEDKRVFVSYDGA---LYFSALEQIDAGNYSCNVQSKVSDTGRNGPFFPLKVFPHSNFQ 395
+ +RV V +G L DAG Y C T L+++
Sbjct: 45 IISTQRVVVQKEGVRSRLTIYNANIEDAGIYRCQATDAKGQTQEAT--VVLEIYQ----- 97
Query: 396 QLKFPNNFPKTFPEAPK-----AGDKVRLECVAFGYPVPSYNWTRRGSPL---PRNAYFE 447
TF E G+ + C P P+ +W + N +
Sbjct: 98 --------KLTFREVVSPQEFKQGEDAEVVCRVSSSPAPAVSWLYHNEEVTTISDNRFAM 149
Query: 448 NFNRILTIPNVKVEDQGEYICRASND--RSALESSVTISIQAEPNFTIP--LTDKHMDNQ 503
N L I N+ D+G Y C + + + + P ++P + +
Sbjct: 150 LANNNLQILNINKSDEGIYRCEGRVEARGEIDFRDIIVIVNVPPAISMPQKSFNATAERG 209
Query: 504 ADLTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQDNV--LTIRYLNPERDPA 561
++T++C A G P+ SWFRNG+ +E+ ++Y ++ + LT+R + D
Sbjct: 210 EEMTFSCRASGSPEPAISWFRNGK-------LIEENEKYILKGSNTELTVRNIINS-DGG 261
Query: 562 MYQCRAKNQLKTRYSSAQLRVLTLKPSF 589
Y CRA N+ A L+V +
Sbjct: 262 PYVCRATNKAGEDEKQAFLQVFV-QHHH 288
Score = 63.7 bits (155), Expect = 5e-11
Identities = 28/136 (20%), Positives = 46/136 (33%), Gaps = 23/136 (16%)
Query: 155 FICEASIQKLHYLLNDDRTYQYGMDIENPDKIPRGPYFIKQPTDVVFDLSKRSILNDITL 214
+ CE + R DI +P ++ + + + ++T
Sbjct: 168 YRCEGR--------VEARGEIDFRDIIVIVNVPPAISMPQKSFNATAERGE-----EMTF 214
Query: 215 SCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVEDRGSYHC 274
SC A G P P+ WF+ LI+ S L + + D G Y C
Sbjct: 215 SCRASGSPEPAISWFRNG--------KLIEENEKYILKGSNTELTVRNI-INSDGGPYVC 265
Query: 275 KASNKFGSIISESVQL 290
+A+NK G + L
Sbjct: 266 RATNKAGE-DEKQAFL 280
>3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical
bundle cytokine, hematopoietic cytokine-receptor
complex, cell surface, EXTR complex; 7.80A {Homo
sapiens}
Length = 527
Score = 235 bits (600), Expect = 9e-68
Identities = 63/536 (11%), Positives = 131/536 (24%), Gaps = 53/536 (9%)
Query: 257 NLIINDPRQVEDRGSYHCKASNKFGSIISESVQLAFGFIGEFNLKRAPEIGNQNWGKAMF 316
N ND V SY + + + Q + G + E ++
Sbjct: 16 NHKNNDS-SVGKSSSYPMVSESPEDLGCALRPQSS-GTVYEAAAVEVDV------SASIT 67
Query: 317 --CDPPTNYPGVNYYWARDYFPNFVEEDKRVFVSYDGALYFSALEQIDAGNYSCNVQSKV 374
++ W + + + ++ + + AG Y +QS+
Sbjct: 68 LQV-LVDAPGNISCLWVFKHSSLNCQPHFDLQNRGVVSMVILKMTETQAGEYLLFIQSEA 126
Query: 375 SDTGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPEAPKAGDKVRLECVAFGYPVPSYNWT 434
F + + + + P K ++ L C++ P P W
Sbjct: 127 ---TNYTILFTVSI---------RNTLLYTLRRPYFRKMENQDALVCISESVPEPIVEWV 174
Query: 435 RRGSPLPRNAYFENFNRILTIPNVKVEDQGEYICRASNDRSALESSVTISIQAEPNFTIP 494
S + + C A N+ + +I
Sbjct: 175 LCDSQGESCKEESPAVVKKEEKVLHELFGTDIRCCARNELGRECTR-LFTIDLNQTPQTT 233
Query: 495 LTDKHMDNQADLTWTCEAFGV-PDVTYSWFRNGELLNSET---LPLEDQDRYFIQDNVLT 550
L + L C+A V +W + L + +R I+
Sbjct: 234 LPQLFLKVGEPLWIRCKAVHVNHGFGLTWELENKALEEGNYFEMSTYSTNRTMIRILFAF 293
Query: 551 IRYLNPERDPAMYQCRAKNQLKTRYSSAQLRVLTLKPSFKKRPLESETYAGEGGNVTIFC 610
+ + D Y C + SA + ++ K + +
Sbjct: 294 VSSVARN-DTGYYTCSSSKHPS---QSALVTIVE-KGFINATNSSEDYEIDQYEEFCFSV 348
Query: 611 NPEAAPKPKFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTATNVHGMDESK 670
+A P+ + W ++ + ++ + G Y A N
Sbjct: 349 RFKAYPQIRCTWTFSRKSFPCE-QKGLDNGYSISKFCNHKHQPGEYIFHAENDDAQFTKM 407
Query: 671 GRLIVLHGPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNEL 730
L + + P++ A Q C + L W + N
Sbjct: 408 FTLNI--------RRKPQVLAEA-SASQASCFSDGYPLPSW--TWKKCSDKSPNCTEEIT 456
Query: 731 ETPNINI--------DGGLLEITNASFADAGEYECVVKSTVGKISTKTTVIVEGPP 778
E + + +C +++G + GP
Sbjct: 457 EGVWNRKANRKVFGQWVSSSTLNMSEAIKGFLVKCCAYNSLGTSCETILLNSPGPF 512
Score = 229 bits (586), Expect = 8e-66
Identities = 69/533 (12%), Positives = 146/533 (27%), Gaps = 57/533 (10%)
Query: 362 DAGNYSCNVQS-KVSDTGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPEAP----KAGDK 416
D C + + K +D+ V T EA
Sbjct: 6 DLPVIKCVLINHKNNDSSVGKSSSYPMVSESPEDLGCALRPQSSGTVYEAAAVEVDVSAS 65
Query: 417 VRLECVAFGYPVPSYNWTRRGSPLPRNAYFENFNR---ILTIPNVKVEDQGEYICRASND 473
+ L+ + S W + S L +F+ NR + I + GEY+ ++
Sbjct: 66 ITLQVLVDAPGNISCLWVFKHSSLNCQPHFDLQNRGVVSMVILKMTETQAGEYLLFIQSE 125
Query: 474 RSALESSVTISIQAEPNFTIPLTDKHMDNQADLTWTCEAFGVPDVTYSWFRNGELLNSET 533
+ T+SI+ +T+ D C + VP+ W
Sbjct: 126 ATNYTILFTVSIRNTLLYTLRRPYFRKMENQD-ALVCISESVPEPIVEWVLCDSQG---- 180
Query: 534 LPLEDQDRYFIQDNVLTIRYLNPERDPAMYQCRAKNQLKTRYSSAQLRVLTLKPSFKKRP 593
+++ ++ + E +C A+N+L + + L + +
Sbjct: 181 ESCKEESPAVVKKEEKVLH----ELFGTDIRCCARNELGRECTRLF--TIDLNQTPQTTL 234
Query: 594 LESETYAGEGGNVTIFCNPEAA-PKPKFVWKKDGNIIGSG---------GRRKIFENGNL 643
+ + G + I C W+ + + G R +
Sbjct: 235 --PQLFLKVGEPLWIRCKAVHVNHGFGLTWELENKALEEGNYFEMSTYSTNRTMIRILFA 292
Query: 644 LISPVSRDDSGIYSCTATNVHGMDESKGRLIVLHGPS-YYEQLPPKITIAAHRNLQLRCS 702
+S V+R+D+G Y+C+++ + ++ I +
Sbjct: 293 FVSSVARNDTGYYTCSSSKHPS---QSALVTIVEKGFINATNSSEDYEIDQYEEFCFSVR 349
Query: 703 AHTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEITNASFADAGEYECVVKST 762
+ WT + +G + GEY ++
Sbjct: 350 FKAYPQIRC--TWTFSRKSFPC-------EQKGLDNGYSISKFCNHKHQPGEYIFHAEND 400
Query: 763 VGKISTKTTVIVEGPPGLPGGVQVVEVHKTSATIQWTDGATNGRP---ITHYKIIARTNW 819
+ + T+ + P V +++ ++G P T K ++
Sbjct: 401 DAQFTKMFTLNIRRKP-------QVLAEASASQASCF---SDGYPLPSWTWKKCSDKSPN 450
Query: 820 NSTWFNVSEHVIGKEVDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPS 872
+ + +S N+ + K A N LG +
Sbjct: 451 CTEEITEGVWNRKANRKVFGQWVSSSTLNMSEAIKGFLVKCCAYNSLGTSCET 503
Score = 217 bits (554), Expect = 2e-61
Identities = 75/536 (13%), Positives = 141/536 (26%), Gaps = 82/536 (15%)
Query: 187 PRGPYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPL 246
P+ + + V D+S ITL N S W + ++L
Sbjct: 46 PQSSGTVYEAAAVEVDVSA-----SITLQVLVDAPGNISCLWVFKH-------SSLNCQP 93
Query: 247 SDKRFTLSGGNLIINDPRQVEDRGSYHCKASNKFGSIISESVQLAFGFIGEFNLKRAPEI 306
+++I G Y ++ + + ++ + L+R P
Sbjct: 94 HFDLQNRGVVSMVILKM-TETQAGEYLLFIQSEATNY-TILFTVSIRNTLLYTLRR-PYF 150
Query: 307 GNQNWGKAMFCDPPTNYPGVNYYWARDYFPNFVEEDKRVFVSYDGALYFSALEQIDAGNY 366
A+ C + P W +++ V L ++ +
Sbjct: 151 RKMENQDALVCISESV-PEPIVEWVLCDSQGESCKEESPAVVKKEEK---VLHELFGTDI 206
Query: 367 SCNVQSKVSDTGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPE-APKAGDKVRLECVAFG 425
C ++++ GR + + T P+ K G+ + + C A
Sbjct: 207 RCCARNEL---GRE----------CTRLFTIDLNQTPQTTLPQLFLKVGEPLWIRCKAVH 253
Query: 426 Y-PVPSYNWTRRGSPLPRNAYFEN----------FNRILTIPNVKVEDQGEYICRASNDR 474
W L YFE + +V D G Y C +S
Sbjct: 254 VNHGFGLTWELENKALEEGNYFEMSTYSTNRTMIRILFAFVSSVARNDTGYYTCSSSKHP 313
Query: 475 SALESSVTISIQAEP--NFTIPLTDKHMDNQADLTWTCEAFGVPDVTYSWFRNGELLNSE 532
S S ++I + N T D +D + ++ P + +W + +
Sbjct: 314 S---QSALVTIVEKGFINATNSSEDYEIDQYEEFCFSVRFKAYPQIRCTWTFSRK----- 365
Query: 533 TLPLEDQDRYFIQDNVLTIRYLNPERDPAMYQCRAKNQLKTRYSSAQLRVLTLKPSFKKR 592
+ + ++ + P Y A+N L + KP
Sbjct: 366 --SFPCEQKGLDNGYSISKFCNHKH-QPGEYIFHAENDDAQFTKMFTLNIRR-KPQVLA- 420
Query: 593 PLESETYAGEGGNVTIFCNPEAAPKPKFVWKK-------DGNIIGSGGRRKIFEN----- 640
E C + P P + WKK I G +
Sbjct: 421 ---------EASASQASCFSDGYPLPSWTWKKCSDKSPNCTEEITEGVWNRKANRKVFGQ 471
Query: 641 --GNLLISPVSRDDSGIYSCTATNVHGMDESKGRLIVLHGPSYYEQLPPKITIAAH 694
+ ++ + C A N G L + + K H
Sbjct: 472 WVSSSTLNMSEAIKGFLVKCCAYNSLGTSCETILLNSPGPFPFIQDGGTKHHHHHH 527
Score = 174 bits (443), Expect = 1e-46
Identities = 58/437 (13%), Positives = 118/437 (27%), Gaps = 70/437 (16%)
Query: 185 KIPRGPYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLID 244
I + + R + N L C + P P EW D + +
Sbjct: 136 SIRNTLLYTLRRPYF------RKMENQDALVCISESVPEPIVEWVLCD--------SQGE 181
Query: 245 PLSDKR-FTLSGGNLIINDPRQVEDRGSYHCKASNKFGSIISESVQLAFGFIGEFNLKRA 303
++ + ++ C A N+ G + + +L +
Sbjct: 182 SCKEESPAVVKKEEKVL----HELFGTDIRCCARNELGRECTRLFTI--------DLNQT 229
Query: 304 PEIGNQNW----GKA--MFCDPPTNYPGVNYYWARD--------YFPNFVEEDKRVFVSY 349
P+ G+ + C G W + YF R +
Sbjct: 230 PQTTLPQLFLKVGEPLWIRCKAVHVNHGFGLTWELENKALEEGNYFEMSTYSTNRTMIR- 288
Query: 350 DGALYFSALEQIDAGNYSCNVQSKVSDTGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPE 409
+ S++ + D G Y+C+ S + + + ++
Sbjct: 289 ILFAFVSSVARNDTGYYTCSSSKHPSQSAL------VTIVEKGFINATNSSEDYEID--- 339
Query: 410 APKAGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYFENFNRILTIPNVKVEDQGEYICR 469
++ YP WT P + ++ GEYI
Sbjct: 340 ---QYEEFCFSVRFKAYPQIRCTWTFSRKSFPCEQKGLDNGYSISKFCNHKHQPGEYIFH 396
Query: 470 ASNDRSALESSVTISIQAEPNFTIPLTDKHMDNQADLTWTCEAFGVPDVTYSWFR----- 524
A ND + T++I+ +P + +C + G P +++W +
Sbjct: 397 AENDDAQFTKMFTLNIRRKPQVLAEAS--------ASQASCFSDGYPLPSWTWKKCSDKS 448
Query: 525 --NGELLNSETLPLEDQDRYFIQDNVLTIRYLNPERDPAMYQCRAKNQLKTRYSSAQLRV 582
E + + + F Q + ++ + +C A N L T + L
Sbjct: 449 PNCTEEITEGVWNRKANRKVFGQWVSSSTLNMSEAIKGFLVKCCAYNSLGTSCETILLNS 508
Query: 583 LTLKPSFKKRPLESETY 599
F + +
Sbjct: 509 PG-PFPFIQDGGTKHHH 524
Score = 68.6 bits (167), Expect = 5e-12
Identities = 18/165 (10%), Positives = 41/165 (24%), Gaps = 21/165 (12%)
Query: 648 VSRDDSGIYSCTATNVH----GMDESKGRLIVLHGPSYYE-----QLPP------KITIA 692
D + C N + +S +V P Q + +
Sbjct: 2 TGNQDLPVIKCVLINHKNNDSSVGKSSSYPMVSESPEDLGCALRPQSSGTVYEAAAVEVD 61
Query: 693 AHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEITNASFADA 752
++ L+ + +W + +L+ + + I + A
Sbjct: 62 VSASITLQVLVDAPGNISC--LWVFKHSSLNCQPHFDLQNRGV----VSMVILKMTETQA 115
Query: 753 GEYECVVKSTVGKISTKTTVIVEGPPGLPGGVQVVEVHKTSATIQ 797
GEY ++S + TV + + +
Sbjct: 116 GEYLLFIQSEATNYTILFTVSIRNTLLYTLRRPYFRKMENQDALV 160
>2rik_A Titin; I-SET IG fold, poly-IG linear array, structural protein;
1.60A {Oryctolagus cuniculus} PDB: 2rjm_A
Length = 284
Score = 225 bits (574), Expect = 5e-67
Identities = 65/289 (22%), Positives = 104/289 (35%), Gaps = 28/289 (9%)
Query: 404 PKTFPEAPK-----AGDKVRLECVAFGYPVPSYNWTRRGSPLPRNA----YFENFNRILT 454
P F P G+ +C G W + + LT
Sbjct: 5 PPFFDLKPVSVDLALGESGTFKCHVTGTAPIKITWAKDNREIRPGGNYKMTLVENTATLT 64
Query: 455 IPNVKVEDQGEYICRASNDRSALESSVTISIQAEPNFTIPLTDKHMDNQ-ADLTWTCEAF 513
+ V D G+Y C ASN S + +Q P F L + Q + C+
Sbjct: 65 VLKVTKGDAGQYTCYASNVAGKDSCSAQLGVQEPPRFIKKLEPSRIVKQDEHTRYECKIG 124
Query: 514 GVPDVTYSWFRNGELLNSETLPLEDQDRYFIQ----DNVLTIRYLNPERDPAMYQCRAKN 569
G P++ W+++ +++ ++ + VL + L+ E D Y C A N
Sbjct: 125 GSPEIKVLWYKDET-------EIQESSKFRMSFVESVAVLEMYNLSVE-DSGDYTCEAHN 176
Query: 570 QLKTRYSSAQLRVLTLKPSFKKRPLESETYAGEGGNVTIFCNPEAAPKPKFVWKKDGNII 629
+ SS L+V P F+K+P +G +V + C + P + W KD +
Sbjct: 177 AAGSASSSTSLKVKE-PPVFRKKP--HPVETLKGADVHLECELQGTPPFQVSWHKDKREL 233
Query: 630 GSGGRRKIFENGN---LLISPVSRDDSGIYSCTATNVHGMDESKGRLIV 675
SG + KI + I V D G Y C A+N G G + +
Sbjct: 234 RSGKKYKIMSENFLTSIHILNVDSADIGEYQCKASNDVGSYTCVGSITL 282
Score = 189 bits (481), Expect = 3e-54
Identities = 61/299 (20%), Positives = 102/299 (34%), Gaps = 31/299 (10%)
Query: 489 PNFTIPLTDKHMDNQADLTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQ--- 545
P F + + T+ C G + +W ++ + Y +
Sbjct: 6 PFFDLKPVSVDLALGESGTFKCHVTGTAPIKITWAKDNR-------EIRPGGNYKMTLVE 58
Query: 546 -DNVLTIRYLNPERDPAMYQCRAKNQLKTRYSSAQLRVLTLKPSFKKRPLESETYAGEGG 604
LT+ + D Y C A N SAQL V P F K+ E +
Sbjct: 59 NTATLTVLKVTKG-DAGQYTCYASNVAGKDSCSAQLGVQE-PPRFIKKL-EPSRIVKQDE 115
Query: 605 NVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIF---ENGNLLISPVSRDDSGIYSCTAT 661
+ C +P+ K +W KD I + ++ L + +S +DSG Y+C A
Sbjct: 116 HTRYECKIGGSPEIKVLWYKDETEIQESSKFRMSFVESVAVLEMYNLSVEDSGDYTCEAH 175
Query: 662 NVHGMDESKGRLIVLHGPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVR 721
N G S L V P + ++ P + ++ L C V W +
Sbjct: 176 NAAGSASSSTSLKVKEPPVFRKK-PHPVETLKGADVHLECELQGTPPFQV--SWHKDKRE 232
Query: 722 IGNMDLNELETPNINI--DGGL--LEITNASFADAGEYECVVKSTVGKISTKTTVIVEG 776
+ I + L + I N AD GEY+C + VG + ++ ++
Sbjct: 233 L-------RSGKKYKIMSENFLTSIHILNVDSADIGEYQCKASNDVGSYTCVGSITLKA 284
Score = 147 bits (372), Expect = 2e-39
Identities = 58/268 (21%), Positives = 93/268 (34%), Gaps = 37/268 (13%)
Query: 329 YWARDYFPNFVEEDKRV---FVSYDGALYFSALEQIDAGNYSC---NVQSKVSDTGRNGP 382
WA+D + V L + + DAG Y+C NV K S + +
Sbjct: 38 TWAKDNRE--IRPGGNYKMTLVENTATLTVLKVTKGDAGQYTCYASNVAGKDSCSAQ--- 92
Query: 383 FFPLKVFPHSNFQQLKFPNNFPKTFPEAPKAGDKVRLECVAFGYPVPSYNWTRRGSPLPR 442
L V F +K K + R EC G P W + + +
Sbjct: 93 ---LGVQEPPRF--IKKLEP-----SRIVKQDEHTRYECKIGGSPEIKVLWYKDETEIQE 142
Query: 443 NAYF----ENFNRILTIPNVKVEDQGEYICRASNDRSALESSVTISIQAEPNFTIPLTDK 498
++ F +L + N+ VED G+Y C A N + SS ++ ++ P F
Sbjct: 143 SSKFRMSFVESVAVLEMYNLSVEDSGDYTCEAHNAAGSASSSTSLKVKEPPVFRKKPHPV 202
Query: 499 HMDNQADLTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQDN----VLTIRYL 554
AD+ CE G P SW ++ L +Y I + I +
Sbjct: 203 ETLKGADVHLECELQGTPPFQVSWHKDKR-------ELRSGKKYKIMSENFLTSIHILNV 255
Query: 555 NPERDPAMYQCRAKNQLKTRYSSAQLRV 582
+ D YQC+A N + + + +
Sbjct: 256 DSA-DIGEYQCKASNDVGSYTCVGSITL 282
Score = 144 bits (366), Expect = 1e-38
Identities = 56/255 (21%), Positives = 95/255 (37%), Gaps = 29/255 (11%)
Query: 586 KPSFKKRPLESETYAGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFE---NGN 642
P F +P G + T C+ K W KD I GG K+
Sbjct: 5 PPFFDLKP--VSVDLALGESGTFKCHVTGTAPIKITWAKDNREIRPGGNYKMTLVENTAT 62
Query: 643 LLISPVSRDDSGIYSCTATNVHGMDESKGRLIVLHGPSYYEQLPPKITIAAHRNLQLRCS 702
L + V++ D+G Y+C A+NV G D +L V P + ++L P + + + C
Sbjct: 63 LTVLKVTKGDAGQYTCYASNVAGKDSCSAQLGVQEPPRFIKKLEPSRIVKQDEHTRYECK 122
Query: 703 AHTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEITNASFADAGEYECVVKST 762
+ V +W + I + + +LE+ N S D+G+Y C +
Sbjct: 123 IGGSPEIKV--LWYKDETEI---QESSKFRMSFVESVAVLEMYNLSVEDSGDYTCEAHNA 177
Query: 763 VGKISTKTTVIVEGPPGL---PGGVQVVE----------VHKTSATIQWTDGATNGRPIT 809
G S+ T++ V+ PP P V+ ++ + W + R +
Sbjct: 178 AGSASSSTSLKVKEPPVFRKKPHPVETLKGADVHLECELQGTPPFQVSWH---KDKRELR 234
Query: 810 ---HYKIIARTNWNS 821
YKI++ S
Sbjct: 235 SGKKYKIMSENFLTS 249
Score = 136 bits (344), Expect = 9e-36
Identities = 72/309 (23%), Positives = 104/309 (33%), Gaps = 41/309 (13%)
Query: 190 PYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDK 249
P+F +P V L + T C+ G W K++ I P +
Sbjct: 6 PFFDLKPVSVDLALGE-----SGTFKCHVTGTAPIKITWAKDN--------REIRPGGNY 52
Query: 250 RFTLSGGN--LIINDPRQVEDRGSYHCKASNKFGSIISE---SVQLAFGFIGEFNLKRAP 304
+ TL L + + D G Y C ASN G VQ FI + R
Sbjct: 53 KMTLVENTATLTVLKVTK-GDAGQYTCYASNVAGKDSCSAQLGVQEPPRFIKKLEPSRIV 111
Query: 305 EIGNQNWGKAMF-CDPPTNYPGVNYYWARDYFPNFVEEDKRVFVSYD-GALYFSALEQID 362
+ + C P + W +D R+ L L D
Sbjct: 112 KQDEH----TRYEC-KIGGSPEIKVLWYKDETEIQESSKFRMSFVESVAVLEMYNLSVED 166
Query: 363 AGNYSCNVQSKVSDTGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPEAPKAGDKVRLECV 422
+G+Y+C + G LKV F K P+ + G V LEC
Sbjct: 167 SGDYTCEAHNAA---GSASSSTSLKVKEPPVF--RKKPHP--VETLK----GADVHLECE 215
Query: 423 AFGYPVPSYNWTRRGSPLPRNAYF----ENFNRILTIPNVKVEDQGEYICRASNDRSALE 478
G P +W + L + ENF + I NV D GEY C+ASND +
Sbjct: 216 LQGTPPFQVSWHKDKRELRSGKKYKIMSENFLTSIHILNVDSADIGEYQCKASNDVGSYT 275
Query: 479 SSVTISIQA 487
+I+++A
Sbjct: 276 CVGSITLKA 284
>2nzi_A Titin; IG-domain, FNIII-domain, transferase; 2.90A {Homo sapiens}
Length = 305
Score = 216 bits (552), Expect = 2e-63
Identities = 72/310 (23%), Positives = 111/310 (35%), Gaps = 29/310 (9%)
Query: 587 PSFKKRPLESETYAGEGGNVTIFCNPEAAPKPKFVWKKDGN-IIGSGGRRKIFE----NG 641
P FK+ N T+ C PKP W + G II G + +I E
Sbjct: 5 PHFKEEL--RNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGGYH 62
Query: 642 NLLISPVSRDDSGIYSCTATNVHGMDESKGRLIV-----LHGPSYYEQLPPKITIAAHRN 696
L+I+ V+ DD+ +Y ATN G L V +H P E +
Sbjct: 63 QLIIASVTDDDATVYQVRATNQGGSVSGTASLEVEVPAKIHLPKTLEG-MGAVHALRGEV 121
Query: 697 LQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEITNASFADAGEYE 756
+ ++ + + W I + + L+ DAG Y
Sbjct: 122 VSIKIPFSGKPDPVI--TWQKGQDLI--DNNGHYQVIVTRSFTSLVFPNGVERKDAGFYV 177
Query: 757 CVVKSTVGKISTKTTVIVEGPPGLPGGVQVVEVHKTSATIQWTD-GATNGRPITHYKIIA 815
K+ G + V P P GV+V +V + S + WT+ + G IT+Y +
Sbjct: 178 VCAKNRFGIDQKTVELDVADVPDPPRGVKVSDVSRDSVNLTWTEPASDGGSKITNYIVEK 237
Query: 816 RTNWNSTWFNVSEHVIGKEVDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPS 875
W V + ++ N L ++Y+F+VIA N+ G +PS PS
Sbjct: 238 CATTAERWLRVGQ----------ARETRYTVIN-LFGKTSYQFRVIAENKFGLSKPSEPS 286
Query: 876 PQYNTPADKP 885
T DK
Sbjct: 287 EPTITKEDKT 296
Score = 130 bits (329), Expect = 2e-33
Identities = 54/228 (23%), Positives = 92/228 (40%), Gaps = 30/228 (13%)
Query: 489 PNFTIPLTDKHMDNQADLTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQDNV 548
P+F L + ++ Q++ T C+ G P W+R G+ + + D +Y IQ+
Sbjct: 5 PHFKEELRNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEI------IADGLKYRIQEFK 58
Query: 549 -----LTIRYLNPERDPAMYQCRAKNQLKTRYSSAQLRVLT----LKPSFKKRPLESETY 599
L I + + D +YQ RA NQ + +A L V P + +
Sbjct: 59 GGYHQLIIASVTDD-DATVYQVRATNQGGSVSGTASLEVEVPAKIHLPKTLEGM--GAVH 115
Query: 600 AGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGN----LLISPVSRDDSGI 655
A G V+I P P W+K ++I + G ++ + + + V R D+G
Sbjct: 116 ALRGEVVSIKIPFSGKPDPVITWQKGQDLIDNNGHYQVIVTRSFTSLVFPNGVERKDAGF 175
Query: 656 YSCTATNVHGMDESKGRLIVLHGPSYYEQLPP---KITIAAHRNLQLR 700
Y A N G+D+ L V P PP K++ + ++ L
Sbjct: 176 YVVCAKNRFGIDQKTVELDVADVPD-----PPRGVKVSDVSRDSVNLT 218
Score = 117 bits (296), Expect = 3e-29
Identities = 32/188 (17%), Positives = 66/188 (35%), Gaps = 24/188 (12%)
Query: 412 KAGDKVRLECVAFGYPVPSYNWTRRGSPLPRNA------YFENFNRILTIPNVKVEDQGE 465
+ L C G+P P W R+G + + F+ L I +V +D
Sbjct: 17 RYQSNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGGYHQLIIASVTDDDATV 76
Query: 466 YICRASNDRSALESSVTISIQAEPNFTIPLTDKHMDNQ-----ADLTWTCEAFGVPDVTY 520
Y RA+N ++ + ++ ++ +P T + M ++ G PD
Sbjct: 77 YQVRATNQGGSVSGTASLEVEVPAKIHLPKTLEGMGAVHALRGEVVSIKIPFSGKPDPVI 136
Query: 521 SWFRNGELLNSETLPLEDQDRYFIQDN-----VLTIRYLNPERDPAMYQCRAKNQLKTRY 575
+W + + +++ Y + ++ + + D Y AKN+
Sbjct: 137 TWQKGQD-------LIDNNGHYQVIVTRSFTSLVFPNGVERK-DAGFYVVCAKNRFGIDQ 188
Query: 576 SSAQLRVL 583
+ +L V
Sbjct: 189 KTVELDVA 196
Score = 73.6 bits (181), Expect = 3e-14
Identities = 38/207 (18%), Positives = 68/207 (32%), Gaps = 22/207 (10%)
Query: 315 MFCDPPTNYPGVNYYWARDYFPNFVEEDKRVFVSYDGA---LYFSALEQIDAGNYSC--- 368
+ C T +P W R + K + G L +++ DA Y
Sbjct: 24 LVC-KVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGGYHQLIIASVTDDDATVYQVRAT 82
Query: 369 NVQSKVSDTGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPEAPKAGDKVRLECVAFGYPV 428
N VS T L+V + K G+ V ++ G P
Sbjct: 83 NQGGSVSGTAS------LEVEVPAKIHLPKTLEGMGAVHA---LRGEVVSIKIPFSGKPD 133
Query: 429 PSYNWTRRGSPLPRNAYFE-----NFNRILTIPNVKVEDQGEYICRASNDRSALESSVTI 483
P W + + N +++ +F ++ V+ +D G Y+ A N + +V +
Sbjct: 134 PVITWQKGQDLIDNNGHYQVIVTRSFTSLVFPNGVERKDAGFYVVCAKNRFGIDQKTVEL 193
Query: 484 SIQAEPNF-TIPLTDKHMDNQADLTWT 509
+ P+ + +LTWT
Sbjct: 194 DVADVPDPPRGVKVSDVSRDSVNLTWT 220
Score = 70.9 bits (174), Expect = 3e-13
Identities = 55/329 (16%), Positives = 86/329 (26%), Gaps = 86/329 (26%)
Query: 684 QLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLE 743
+ + + N L C W G I L L
Sbjct: 9 EELRNLNVRYQSNATLVCKV--TGHPKPIVKWYRQGKEIIADGLKYRIQEFKG-GYHQLI 65
Query: 744 ITNASFADAGEYECVVKSTVGKISTKTTVIVEGPPGL--------PGGVQVVE------- 788
I + + DA Y+ + G +S ++ VE P + G V +
Sbjct: 66 IASVTDDDATVYQVRATNQGGSVSGTASLEVEVPAKIHLPKTLEGMGAVHALRGEVVSIK 125
Query: 789 ---VHKTSATIQWTDGATNGRPIT---HYKIIARTNWNSTWFNVSEHVIGKEVDRY-TGR 841
K I W I HY++I ++ S V V+R G
Sbjct: 126 IPFSGKPDPVITWQ---KGQDLIDNNGHYQVIVTRSFTSL-------VFPNGVERKDAGF 175
Query: 842 KEASIENVLVPWSTYEFKVIAGNELGYGEPSSPSPQYNTPADKPYQAPSRIGGGGGKIGD 901
+ V A N G + + AD P P + K+ D
Sbjct: 176 ----------------YVVCAKNRFGIDQKTV----ELDVADVP-DPPRGV-----KVSD 209
Query: 902 LS-----ISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETLKEYGNVGIAVVRIPSEFY 956
+S ++W P + Y + + V + Y
Sbjct: 210 VSRDSVNLTWTE-PASDGGSKITNYIVEKCATTAERWL------------RVGQARETRY 256
Query: 957 -------YTEYEVKVQAINDVGPGPESEV 978
T Y+ +V A N G SE
Sbjct: 257 TVINLFGKTSYQFRVIAENKFGLSKPSEP 285
Score = 65.2 bits (159), Expect = 2e-11
Identities = 33/196 (16%), Positives = 67/196 (34%), Gaps = 27/196 (13%)
Query: 190 PYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDK 249
P+F ++ ++ + TL C G+P P +W+++ I K
Sbjct: 5 PHFKEELRNLNVRYQS-----NATLVCKVTGHPKPIVKWYRQG--------KEIIADGLK 51
Query: 250 -RFTLSGGN---LIINDPRQVEDRGSYHCKASNKFGSIISE---SVQLAFGFIGEFNLKR 302
R G LII +D Y +A+N+ GS+ V++ L+
Sbjct: 52 YRIQEFKGGYHQLIIASV-TDDDATVYQVRATNQGGSVSGTASLEVEVPAKIHLPKTLEG 110
Query: 303 APEIGNQNWGKAMFCDPPTNYPGVNYYWARDYFPNFVEEDKRVFVSYDGA----LYFSAL 358
+ P + P W + ++ + V + ++ + +
Sbjct: 111 MGAVHALRGEVVSIKIPFSGKPDPVITWQKGQDL--IDNNGHYQVIVTRSFTSLVFPNGV 168
Query: 359 EQIDAGNYSCNVQSKV 374
E+ DAG Y +++
Sbjct: 169 ERKDAGFYVVCAKNRF 184
Score = 56.7 bits (137), Expect = 1e-08
Identities = 25/114 (21%), Positives = 43/114 (37%), Gaps = 17/114 (14%)
Query: 179 DIENPDKIPRGPYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRL 238
++E P KI P ++ V +++ G P+P W K
Sbjct: 95 EVEVPAKI-HLPKTLEGMGAVHALRG-----EVVSIKIPFSGKPDPVITWQKGQ------ 142
Query: 239 VANLIDPLSDKRFTLSGGNLIINDPRQV--EDRGSYHCKASNKFGSIISESVQL 290
+LID + ++ + P V +D G Y A N+FG ++V+L
Sbjct: 143 --DLIDNNGHYQVIVTRSFTSLVFPNGVERKDAGFYVVCAKNRFGI-DQKTVEL 193
>2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor
tyrosine kinase, growth factor cytoki dimerization,
transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A*
Length = 524
Score = 214 bits (546), Expect = 2e-60
Identities = 74/541 (13%), Positives = 132/541 (24%), Gaps = 90/541 (16%)
Query: 190 PYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDK 249
P +D++ + ++I L C G+ +W + D+
Sbjct: 37 PSIHPGKSDLIVRVG-----DEIRLLCTDPGFV----KWTF--------------EILDE 73
Query: 250 RFTLSGGNLIINDPRQVEDRGSYHCKASNKFGSIISESVQLAFGFIGEFNLKRAPEIGNQ 309
I + + G Y C + + I V+ + L G +
Sbjct: 74 TNENKQNEWITEKA-EATNTGKYTCTNKHGLSNSIYVFVRDP----AKLFLVDRSLYGKE 128
Query: 310 NWGKAMFCDPPTNYPGVNYYWARDYFPNFVEEDKRVFVSYDGALYF-SALEQIDAGNYSC 368
+ + C P V Y + + +D R + S C
Sbjct: 129 DNDTLVRCPLTD--PEVTNYSLKGCQGKPLPKDLRFIPDPKAGIMIKSVKRAYHRLCLHC 186
Query: 369 NVQSKVSDTGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPEAPKAGDKVRLECVAFGYPV 428
+V F LKV P P + G++ + C
Sbjct: 187 SV--DQEGKSVLSEKFILKVRPAFK----AVPVVSVSKASYLLREGEEFTVTCTIKDVSS 240
Query: 429 P-SYNWTRRGSPLPRNAYFE---------NFNRILTIPNVKVEDQGEYICRASNDRSALE 478
W R S + LTI + +V D G ++C A+N +
Sbjct: 241 SVYSTWKRENSQTKLQEKYNSWHHGDFNYERQATLTISSARVNDSGVFMCYANNTFGSAN 300
Query: 479 SSVTISIQAEPNFTIPLTDKHMDNQA-----DLTWTCEAFGVPD-VTYSWFRNGELL--N 530
+ T+ + + I + ++ E P W
Sbjct: 301 VTTTLEVVDKG--FINIFPMINTTVFVNDGENVDLIVEYEAFPKPEHQQWIYMNRTFTDK 358
Query: 531 SETLPLEDQDRYFIQDNVLTIRYLNPERDPAMYQCRAKNQLKTRYSSAQLRVLTLKPSFK 590
E P + + + L + L + Y N + + V T KP
Sbjct: 359 WEDYPKSENESNIRYVSELHLTRLKGT-EGGTYTFLVSNSDVNAAIAFNVYVNT-KPEIL 416
Query: 591 KRPLESETYAGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGN-------- 642
N + C P+P W + +
Sbjct: 417 TYD--------RLVNGMLQCVAAGFPEPTIDWYFCPGTEQRCSASVLPVDVQTLNSSGPP 468
Query: 643 -------LLISPVSRDDSGIYSCTATNVHGMDESKGRLIVLHGPSYYEQLPPKITIAAHR 695
I + +G C A N G + + K I H
Sbjct: 469 FGKLVVQSSIDSSAFKHNGTVECKAYNDVGKTSAYFNFAF--------KGNNKEQIHPHH 520
Query: 696 N 696
+
Sbjct: 521 H 521
Score = 199 bits (507), Expect = 4e-55
Identities = 73/475 (15%), Positives = 135/475 (28%), Gaps = 76/475 (16%)
Query: 362 DAGNYSCNVQSKVS-DTGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPEAPK-----AGD 415
A ++ C + + TG + P P + GD
Sbjct: 6 GAWDFLCVLLLLLRVQTGSSQPSVSPGEPS-------------PPSIHPGKSDLIVRVGD 52
Query: 416 KVRLECVAFGYPVPSYNWTRRGSPLPRNAYFENFNRILTIPNVKVEDQGEYICRASNDRS 475
++RL C G+ WT EN + + G+Y C +
Sbjct: 53 EIRLLCTDPGFV----KWTFEILDETN----ENKQNEWITEKAEATNTGKYTCTNKHG-- 102
Query: 476 ALESSVTISIQAEPNFTIPLTDKHMDNQADLTWTCEAFGVPDVTYSWFRNGELLNSETLP 535
L +S+ + ++ + + D C P+VT + + P
Sbjct: 103 -LSNSIYVFVRDPAKLFLVDRSLYGKEDNDTLVRCPL-TDPEVTNYSLKGCQGK-----P 155
Query: 536 LEDQDRYFIQDNV-LTIRYLNPERDPAMYQCRAKNQLKTRYSS-AQLRVL---TLKPSFK 590
L R+ + I+ + C + K+ S L+V P
Sbjct: 156 LPKDLRFIPDPKAGIMIKSVKRAYHRLCLHCSVDQEGKSVLSEKFILKVRPAFKAVPVVS 215
Query: 591 KRPLESETYAGEGGNVTIFCNPEAAPKP-KFVWKKDGNIIGSGGRRKIFENGN------- 642
+ EG T+ C + WK++ + + + +G+
Sbjct: 216 VSK--ASYLLREGEEFTVTCTIKDVSSSVYSTWKRENSQTKLQEKYNSWHHGDFNYERQA 273
Query: 643 -LLISPVSRDDSGIYSCTATNVHGMDESKGRLIVLHGP--SYYEQLPPKITIAAHRNLQL 699
L IS +DSG++ C A N G L V+ + + + + + N+ L
Sbjct: 274 TLTISSARVNDSGVFMCYANNTFGSANVTTTLEVVDKGFINIFPMINTTVFVNDGENVDL 333
Query: 700 RCSAHTEELLDVAY------IWTHNGVRIGNM--DLNELETPNINIDGGLLEITNASFAD 751
A+ W + + D + E + L +T +
Sbjct: 334 IVEYE-------AFPKPEHQQWIYMNRTFTDKWEDYPKSENESNIRYVSELHLTRLKGTE 386
Query: 752 AGEYECVVKSTVGKISTKTTVIVEGPP---GLPGGVQVV---EVH-KTSATIQWT 799
G Y +V ++ + V V P V + TI W
Sbjct: 387 GGTYTFLVSNSDVNAAIAFNVYVNTKPEILTYDRLVNGMLQCVAAGFPEPTIDWY 441
Score = 197 bits (503), Expect = 1e-54
Identities = 78/480 (16%), Positives = 141/480 (29%), Gaps = 64/480 (13%)
Query: 330 WARDYFPNFVEEDKRVFVSYDGALYFSALEQIDAGNYSCNVQSKVSDTGRNGPFFPLKVF 389
W + + E + G Y+C + +S++ + VF
Sbjct: 66 WTFEILD-------ETNENKQNEWITEKAEATNTGKYTCTNKHGLSNS--------IYVF 110
Query: 390 PHSNFQQLKFPNNFPKTFPEAPKAGDKVRLECVAFGYPVPSYNWTR-RGSPLPRNA-YFE 447
F K + + C V +Y+ +G PLP++ +
Sbjct: 111 VRD------PAKLFLVDRSLYGKEDNDTLVRCPLTDPEVTNYSLKGCQGKPLPKDLRFIP 164
Query: 448 NFNRILTIPNV-KVEDQGEYICRASNDRSALESS-----VTISIQAEPNFTIPLTDKHMD 501
+ + I +V + + C + ++ S V + +A P ++ +
Sbjct: 165 DPKAGIMIKSVKRAYHRLCLHCSVDQEGKSVLSEKFILKVRPAFKAVPVVSVSKASYLLR 224
Query: 502 NQADLTWTCEAFGVP-DVTYSWFRNGELLNSETLPLEDQ--DRYFIQDNVLTIRYLNPER 558
+ T TC V V +W R + D + + LTI
Sbjct: 225 EGEEFTVTCTIKDVSSSVYSTWKRENSQTKLQEKYNSWHHGDFNYERQATLTISSARVN- 283
Query: 559 DPAMYQCRAKNQLKTRYSSAQLRVLTLKPSFKKRPLESETY-AGEGGNVTIFCNPEAAPK 617
D ++ C A N + + L V+ K P+ + T +G NV + EA PK
Sbjct: 284 DSGVFMCYANNTFGSANVTTTLEVVD-KGFINIFPMINTTVFVNDGENVDLIVEYEAFPK 342
Query: 618 PKFV-WKKDGNIIGSG--------GRRKIFENGNLLISPVSRDDSGIYSCTATNVHGMDE 668
P+ W I L ++ + + G Y+ +N
Sbjct: 343 PEHQQWIYMNRTFTDKWEDYPKSENESNIRYVSELHLTRLKGTEGGTYTFLVSNSDVNAA 402
Query: 669 SKGRLIVLHGPSYYEQLPPKI-TIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDL 727
+ V P+I T N L+C A + W
Sbjct: 403 IAFNVYV--------NTKPEILTYDRLVNGMLQCVAAGFPEPTID--WYFCPGTEQRCSA 452
Query: 728 NELETPNINIDGGL---------LEITNASFADAGEYECVVKSTVGKISTKTTVIVEGPP 778
+ L ++ I +++F G EC + VGK S +G
Sbjct: 453 SVLPVDVQTLNSSGPPFGKLVVQSSIDSSAFKHNGTVECKAYNDVGKTSAYFNFAFKGNN 512
Score = 142 bits (358), Expect = 1e-35
Identities = 48/379 (12%), Positives = 89/379 (23%), Gaps = 57/379 (15%)
Query: 461 EDQGEYIC----RASNDRSALESSVTISIQAEPNFTIPLTDKHMDNQADLTWTCEAFGVP 516
+++C + + SV+ + P+ +D + ++ C G
Sbjct: 5 RGAWDFLCVLLLLLRVQTGSSQPSVSPGEPSPPSIHPGKSDLIVRVGDEIRLLCTDPGFV 64
Query: 517 DVTYSWFRNGELLNSETLPLEDQDRYFIQDNVLTIRYLNPERDPAMYQCRAKNQLKTRYS 576
W +E + N + Y C K+ +
Sbjct: 65 ----KWTFEILDETNEN-----------KQNEWITEKAEAT-NTGKYTCTNKH---GLSN 105
Query: 577 SAQLRVLTLKPSFKKRPLESETYAGEGGNVTIFCNPEAAPKPKFVWKK--DGNIIGSGGR 634
S + V Y E + + C P+ K G + R
Sbjct: 106 SIYVFVRD-PAKLFLVD--RSLYGKEDNDTLVRCPL-TDPEVTNYSLKGCQGKPLPKDLR 161
Query: 635 RKIFENGNLLISPVSR-DDSGIYSCTATNVHGMDESKG-RLIVL---HGPSYYEQLPPKI 689
++I V R C+ S+ L V
Sbjct: 162 FIPDPKAGIMIKSVKRAYHRLCLHCSVDQEGKSVLSEKFILKVRPAFKAVPVVSVSKASY 221
Query: 690 TIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRI--GNMDLNELETPNINIDGGLLEITNA 747
+ + C+ + V W + + L I++A
Sbjct: 222 LLREGEEFTVTCTI-KDVSSSVYSTWKRENSQTKLQEKYNSWHHGDFNYERQATLTISSA 280
Query: 748 SFADAGEYECVVKSTVGKISTKTTVIVEGPPGLP-----GGVQVVEVHKTS--------- 793
D+G + C +T G + TT+ V + V +
Sbjct: 281 RVNDSGVFMCYANNTFGSANVTTTLEVVDKGFINIFPMINTTVFVNDGENVDLIVEYEAF 340
Query: 794 ---ATIQWTDGATNGRPIT 809
QW R T
Sbjct: 341 PKPEHQQWI---YMNRTFT 356
>2v5y_A Receptor-type tyrosine-protein phosphatase MU; membrane, hydrolase,
glycoprotein, receptor protei tyrosine phosphatase, cell
adhesion; HET: NAG; 3.10A {Homo sapiens}
Length = 731
Score = 215 bits (548), Expect = 5e-59
Identities = 71/388 (18%), Positives = 128/388 (32%), Gaps = 29/388 (7%)
Query: 599 YAGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSC 658
G + ++ P +W G+ + R L IS + +
Sbjct: 87 SNSPPGLLNVYVKVNNGPLGNPIWNISGDPTRTWNR------AELAISTFWPNFYQVIFE 140
Query: 659 TATNVHGMDESKGRLIVLHGPSYYEQL---PPKITIAAHRNLQLRCSAHTEELLDVAYIW 715
T+ H + + VL P + + A + +CSA +
Sbjct: 141 VITSGHQGYLAIDEVKVLGHPCTRTPHFLRIQNVEVNAGQFATFQCSAIGRTVAGD--RL 198
Query: 716 THNGVRIGNMDLNELETPNINIDGGLLEITNASFADAGEYECVVKSTVGK-ISTKTTVIV 774
G+ + + L E++ + + N + DAG+Y C++++ G IS ++V
Sbjct: 199 WLQGIDVRDAPLKEIKVTSSRRFIASFNVVNTTKRDAGKYRCMIRTEGGVGISNYAELVV 258
Query: 775 EGPPGLPGGVQVVEVHKTSATIQWTDGATNG-RPITHYKIIARTNWNSTWFNVSEHVIGK 833
+ PP Q+ V T IQ + NG PI ++ T + +W
Sbjct: 259 KEPPVPIAPPQLASVGATYLWIQLNANSINGDGPIVAREVEYCTA-SGSW---------- 307
Query: 834 EVDRYTGRK-EASIENVLVPWSTYEFKVIAGNELGYGE-PSSPSPQYNTPADKPYQAPSR 891
DR I + L P + YE V+ G P+ + T P + P +
Sbjct: 308 -NDRQPVDSTSYKIGH-LDPDTEYEISVLLTRPGEGGTGSPGPALRTRTKCADPMRGPRK 365
Query: 892 IGGGGGKIGDLSISWEPLPREKQNAPNIYYKIFWRKK-NDTEFQSETLKEYGNVGIAVVR 950
+ K ++I WEP + + + + E E +
Sbjct: 366 LEVVEVKSRQITIRWEPFGYNVTRCHSYNLTVHYCYQVGGQEQVREEVSWDTENSHPQHT 425
Query: 951 IPSEFYYTEYEVKVQAINDVGPGPESEV 978
I + YT VK+ +N G E+
Sbjct: 426 ITNLSPYTNVSVKLILMNPEGRKESQEL 453
Score = 144 bits (365), Expect = 8e-36
Identities = 78/549 (14%), Positives = 154/549 (28%), Gaps = 67/549 (12%)
Query: 462 DQGEYICRASNDRSALESSVTISIQAEPN------FTIPLTDKHMDNQADLTWTCEAFGV 515
G ++ ++ R + + + Q + N F ++ K L +
Sbjct: 44 PSGSFMLVNASGRPEGQRAHLLLPQLKENDTHCIDFHYFVSSKSNSPPGLLNVYVKVNNG 103
Query: 516 PDVTYSWFRNGELLNSETLPLEDQDRYFIQDNVLTIRYLNPERDPAMYQCRAKNQLKTRY 575
P W +G+ + L I P + + +
Sbjct: 104 PLGNPIWNISGDPTRT------------WNRAELAISTFWPN-FYQVIFEVITSGHQGYL 150
Query: 576 SSAQLRVLTLKPSFK-KRPLESETYAGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGR 634
+ +++VL + G T C+ G +
Sbjct: 151 AIDEVKVLGHPCTRTPHFLRIQNVEVNAGQFATFQCSAIGRTVAGDRLWLQGIDVRDAPL 210
Query: 635 RKIFEN------GNLLISPVSRDDSGIYSCTATNVHGMDESKGRLIVLHGPSYYEQLPPK 688
++I + + ++ D+G Y C G+ S +V+ P PP+
Sbjct: 211 KEIKVTSSRRFIASFNVVNTTKRDAGKYRCMIRTEGGVGISNYAELVVKEPPV-PIAPPQ 269
Query: 689 ITIAAHR--NLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEITN 746
+ +QL ++ + VA + D +++ + I L T
Sbjct: 270 LASVGATYLWIQLNANSINGDGPIVAREVEYCTASGSWNDRQPVDSTSYKIGH-LDPDTE 328
Query: 747 ASFADAGEYECVVKSTVGKI-------STKTTVIVEGPPGLPGGVQVVEVHKTSATIQWT 799
V+ + G+ + +T P P ++VVEV TI+W
Sbjct: 329 YEI-------SVLLTRPGEGGTGSPGPALRTRTKCADPMRGPRKLEVVEVKSRQITIRWE 381
Query: 800 ---DGATNGRPITHYKIIARTNWNSTWFNVSEHVIGKEVDRYTGRKEASIENVLVPWSTY 856
T + + E E + +I N L P++
Sbjct: 382 PFGYNVTRC-HSYNLTVHYCYQVGGQEQVREEVSWDTENSHP----QHTITN-LSPYTNV 435
Query: 857 EFKVIAGNELGYGEPSSPSPQYNTPADKPYQAPSRIGGGGGKIGDLSISWEPLPREKQNA 916
K+I N G S T D P P+ G + + W +
Sbjct: 436 SVKLILMNPEGRK-ESQELIVQ-TDEDLPGAVPTESIQGSTFEEKIFLQWREPT--QTYG 491
Query: 917 PNIYYKIFWRKKNDTEFQSETLKEYGNVGIAVVRIPSEFY-------YTEYEVKVQAIND 969
Y+I ++ + + + + + G V + T Y ++A
Sbjct: 492 VITLYEITYKAVSSFDPEIDLSNQSGRV---SKLGNETHFLFFGLYPGTTYSFTIRASTA 548
Query: 970 VGPGPESEV 978
G GP +
Sbjct: 549 KGFGPPATN 557
Score = 124 bits (312), Expect = 2e-29
Identities = 77/635 (12%), Positives = 163/635 (25%), Gaps = 87/635 (13%)
Query: 407 FPEAPKAGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYFENFNRILTIPNVKVEDQGEY 466
++ + + P+ + W G P E L I
Sbjct: 84 SSKSNSPPGLLNVYVKVNNGPLGNPIWNISGDPTRTWNRAE-----LAISTFWPNFYQVI 138
Query: 467 ICRASNDRSALESSVTISIQAEPNFTIPLTDKHMDNQA----DLTWTCEAFGVPDVTYSW 522
++ + + + P P + + + T+ C A G
Sbjct: 139 FEVITSGHQGYLAIDEVKVLGHPCTRTPHFLRIQNVEVNAGQFATFQCSAIGRTVAGDRL 198
Query: 523 FRNGELLNSETLPLEDQDRYFIQDNVLTIRYLNPERDPAMYQCRAKNQLKTRYSSAQLRV 582
+ G + L + RD Y+C + + S+ V
Sbjct: 199 WLQGIDVRDAPLKEIKVTSSRRFIASFNVVNTTK-RDAGKYRCMIRTEGGVGISNYAELV 257
Query: 583 LTLKPSFKKRPLESETYAGEGGNVTIFCNPEAAPKP--KFVWKKDGNIIGSGGRRKIFEN 640
+ P P + + + + N P + GS R+ ++
Sbjct: 258 VKEPPVPIA-PPQLASVGATYLWIQLNANSINGDGPIVAREVEY-CTASGSWNDRQPVDS 315
Query: 641 GNLLISPVSRDDSGIYSCTATNVHGMDESKGRLIVLHGPSYYEQLPPKITIAAHRNLQLR 700
+ I + D S T GP+ + + R L++
Sbjct: 316 TSYKIGHLDPDTEYEISVLLTRPGEGGTG------SPGPALRTRTKCADPMRGPRKLEVV 369
Query: 701 CSAHTEELLDVAYIWT------HNGVRIG---------NMDLNELETPNINIDGGLLEIT 745
+ + W E + + + + T
Sbjct: 370 EVKSRQ----ITIRWEPFGYNVTRCHSYNLTVHYCYQVGGQEQVREEVSWDTENSHPQHT 425
Query: 746 NASFADAGEYECVVK--STVGKISTKTTVIV--EGPPGLPG-GVQVVEVHKTSATIQWTD 800
+ + + + G+ ++ ++ E PG + +QW +
Sbjct: 426 ITNLSPYTNVSVKLILMNPEGRKESQELIVQTDEDLPGAVPTESIQGSTFEEKIFLQWRE 485
Query: 801 GATNGRPITHYKIIARTNWNSTWFNVSEHVIGKEVDRYTGRKEASIENVLVPWSTYEFKV 860
IT Y+I + +S + V + L P +TY F +
Sbjct: 486 PTQTYGVITLYEITYKAV-SSFDPEIDLSNQSGRVSKLGNETHFLFFG-LYPGTTYSFTI 543
Query: 861 IAGNELGYGEPSSPSPQYNTPADKPYQAPSRIGGGGGKIGDLSISWEPLPREKQNAPNIY 920
A G+G P++ T P P+ D +++ P + AP
Sbjct: 544 RASTAKGFGPPATNQFT--TKISAP-SMPAYELETPLNQTDNTVTVMLKPAHSRGAPVSV 600
Query: 921 YKIFWRKKNDT--------------------------------EFQSETLKEYGNVGIAV 948
Y+I ++ EF +++L+ I
Sbjct: 601 YQIVVEEERPRRTKKTTEILKCYPVPIHFQNASLLNSQYYFAAEFPADSLQAAQPFTIGD 660
Query: 949 VRIPSEFY------YTEYEVKVQAINDVGPGPESE 977
+ + ++ Y Y + QA + + +
Sbjct: 661 NKTYNGYWNTPLLPYKSYRIYFQAASRANGETKID 695
Score = 57.1 bits (137), Expect = 2e-08
Identities = 36/263 (13%), Positives = 62/263 (23%), Gaps = 44/263 (16%)
Query: 319 PPTNYPGVNYYWARDYFP----NFVEEDKRVFVSYDGALYFSALEQIDAGNYSCNVQSKV 374
N P N W P N E F + F + G + +
Sbjct: 99 KVNNGPLGNPIWNISGDPTRTWNRAELAISTFWPNFYQVIFEVITSGHQGYLAID----- 153
Query: 375 SDTGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPEAPKAGDKVRLECVAFGYPVPSYNWT 434
P F ++ AG +C A G V
Sbjct: 154 EVKVLGHPCTRTPHFLRIQNVEVN--------------AGQFATFQCSAIGRTVAGDRLW 199
Query: 435 RRGSPLP-------RNAYFENFNRILTIPNVKVEDQGEYICRASNDR-SALESSVTISIQ 486
+G + + F + N D G+Y C + + + + ++
Sbjct: 200 LQGIDVRDAPLKEIKVTSSRRFIASFNVVNTTKRDAGKYRCMIRTEGGVGISNYAELVVK 259
Query: 487 AEPNFTIPLT-DKHMDNQADLTWTCEAF--GVPDVTYSWFRNGELLNSETLPLEDQDRYF 543
P P + + P V T DR
Sbjct: 260 EPPVPIAPPQLASVGATYLWIQLNANSINGDGPIVAREVEY-------CTASGSWNDRQP 312
Query: 544 IQDNVLTIRYLNPERDPAMYQCR 566
+ I +L+P+ + Y+
Sbjct: 313 VDSTSYKIGHLDPDTE---YEIS 332
Score = 43.6 bits (102), Expect = 3e-04
Identities = 17/150 (11%), Positives = 35/150 (23%), Gaps = 34/150 (22%)
Query: 775 EGPPGLPGGVQVVEVHKTSATI--QWTDGATNGRPITHYKIIARTN-------------- 818
P +P +++T T+ + G P++ Y+I+
Sbjct: 563 ISAPSMPAYELETPLNQTDNTVTVMLKPAHSRGAPVSVYQIVVEEERPRRTKKTTEILKC 622
Query: 819 -----------------WNSTWFNVSEHVIGKEVDRYTGRKEASIENV-LVPWSTYEFKV 860
+ + F + + N L+P+ +Y
Sbjct: 623 YPVPIHFQNASLLNSQYYFAAEFPADSLQAAQPFTIGDNKTYNGYWNTPLLPYKSYRIYF 682
Query: 861 IAGNELGYGEPSSPSPQYNTPADKPYQAPS 890
A + A P P
Sbjct: 683 QAASRANGETKIDCVQVATKGAATPKPVPE 712
Score = 39.0 bits (90), Expect = 0.009
Identities = 18/122 (14%), Positives = 35/122 (28%), Gaps = 9/122 (7%)
Query: 169 NDDRTYQYGMDIENPDKIPRGPYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEW 228
+ + Y +++ + +V + + T C A G
Sbjct: 144 SGHQGYLAIDEVKVLGHPCTRTPHFLRIQNVEVNAGQ-----FATFQCSAIGRTVAGDRL 198
Query: 229 FKEDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVEDRGSYHCKASNKFGSIISESV 288
+ + I S +RF + + + D G Y C + G IS
Sbjct: 199 WLQGIDVRDAPLKEIKVTSSRRFI---ASFNVVNT-TKRDAGKYRCMIRTEGGVGISNYA 254
Query: 289 QL 290
+L
Sbjct: 255 EL 256
Score = 32.8 bits (74), Expect = 0.56
Identities = 14/166 (8%), Positives = 35/166 (21%), Gaps = 14/166 (8%)
Query: 211 DITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVEDRG 270
+ + P + W L+ F + +I +G
Sbjct: 93 LLNVYVKVNNGPLGNPIWNISGDPTRT---WNRAELAISTFWPNFYQVIFEV-ITSGHQG 148
Query: 271 SYHCKASNKFGSIISESVQLAFGFIGEFNLKRAPEIGNQNWGKAMFCDPPTNYPGVNYYW 330
+ + + G +
Sbjct: 149 YLAIDEVK-----VLGHPCTRTPHFLRIQNVEVNAGQFATFQCSAIGRTV---AGDRLWL 200
Query: 331 ARDYFPNFVEEDKRVFVSYD--GALYFSALEQIDAGNYSCNVQSKV 374
+ ++ +V S + + DAG Y C ++++
Sbjct: 201 QGIDVRDAPLKEIKVTSSRRFIASFNVVNTTKRDAGKYRCMIRTEG 246
>1ry7_B FGFR-3, fibroblast growth factor receptor 3; FGF-FGFR complex, beta
trefoil, IG domain, growth factor/growth factor receptor
complex; 3.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4
Length = 334
Score = 203 bits (517), Expect = 2e-58
Identities = 69/323 (21%), Positives = 103/323 (31%), Gaps = 52/323 (16%)
Query: 403 FPKTFPEAPK-----AGDKVRLECVAF-GYPVPSYNWTRRGSPLPRNAYFENFNRILTIP 456
P P + +GD V L C G P+ W + G+ L + + L +
Sbjct: 7 VPGPEPGQQEQLVFGSGDAVELSCPPPGGGPMGPTVWVKDGTGLVPSERVLVGPQRLQVL 66
Query: 457 NVKVEDQGEYICRASN---------------------DRSALESSVTISIQAEPNFTIPL 495
N ED G Y CR + E+ T P +T P
Sbjct: 67 NASHEDSGAYSCRQRLTQRVLCHFSVRVTDAPSSGDDEDGEDEAEDTGVDTGAPYWTRPE 126
Query: 496 TDKHMDNQA----DLTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQDNVLTI 551
+ + C A G P + SW +NG E + Q L +
Sbjct: 127 RMDKKLLAVPAANTVRFRCPAAGNPTPSISWLKNGREFRGE--HRIGGIKLRHQQWSLVM 184
Query: 552 RYLNPERDPAMYQCRAKNQLKTRYSSAQLRVLTLKPS--FKKRPLESETYAGEGGNVTIF 609
+ P D Y C +N+ + + L VL P + L + A G +V
Sbjct: 185 ESVVPS-DRGNYTCVVENKFGSIRQTYTLDVLERSPHRPILQAGLPANQTAVLGSDVEFH 243
Query: 610 CNPEAAPKPKFVWKKDGNIIGS----------------GGRRKIFENGNLLISPVSRDDS 653
C + +P W K + GS G E L + V+ +D+
Sbjct: 244 CKVYSDAQPHIQWLKHVEVNGSKVGPDGTPYVTVLKTAGANTTDKELEVLSLHNVTFEDA 303
Query: 654 GIYSCTATNVHGMDESKGRLIVL 676
G Y+C A N G L+VL
Sbjct: 304 GEYTCLAGNSIGFSHHSAWLVVL 326
Score = 149 bits (378), Expect = 8e-40
Identities = 56/315 (17%), Positives = 97/315 (30%), Gaps = 51/315 (16%)
Query: 505 DLTWTCEAF-GVPDVTYSWFRNGELLNSETLPLEDQDRYFIQDNVLTIRYLNPERDPAMY 563
+ +C G P W ++G L +R + L + + E D Y
Sbjct: 25 AVELSCPPPGGGPMGPTVWVKDGT-------GLVPSERVLVGPQRLQVLNASHE-DSGAY 76
Query: 564 QCRAKNQLKTRYSSAQLRVLTL--------------------KPSFKKRPLESETY--AG 601
CR + + + P + + +
Sbjct: 77 SCRQRLTQRVLCHFSVRVTDAPSSGDDEDGEDEAEDTGVDTGAPYWTRPERMDKKLLAVP 136
Query: 602 EGGNVTIFCNPEAAPKPKFVWKKDGNIIGS----GGRRKIFENGNLLISPVSRDDSGIYS 657
V C P P W K+G GG + + +L++ V D G Y+
Sbjct: 137 AANTVRFRCPAAGNPTPSISWLKNGREFRGEHRIGGIKLRHQQWSLVMESVVPSDRGNYT 196
Query: 658 CTATNVHGMDESKGRLIVL----HGPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAY 713
C N G L VL H P LP T +++ C +++ +
Sbjct: 197 CVVENKFGSIRQTYTLDVLERSPHRPILQAGLPANQTAVLGSDVEFHCKVYSDAQPHI-- 254
Query: 714 IWTH----NGVRIGN------MDLNELETPNINIDGGLLEITNASFADAGEYECVVKSTV 763
W NG ++G L + + +L + N +F DAGEY C+ +++
Sbjct: 255 QWLKHVEVNGSKVGPDGTPYVTVLKTAGANTTDKELEVLSLHNVTFEDAGEYTCLAGNSI 314
Query: 764 GKISTKTTVIVEGPP 778
G ++V
Sbjct: 315 GFSHHSAWLVVLPAE 329
Score = 143 bits (361), Expect = 1e-37
Identities = 58/310 (18%), Positives = 97/310 (31%), Gaps = 40/310 (12%)
Query: 317 CDPPTNYPGVNYYWARDYFPNFVEEDKRVFVSYDGALYFSALEQIDAGNYSCNVQSKVSD 376
C PP P W +D + +RV V L D+G YSC +
Sbjct: 30 CPPPGGGPMGPTVWVKDGTG--LVPSERVLVG-PQRLQVLNASHEDSGAYSCRQRLTQRV 86
Query: 377 TGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPEAPK---------------AGDKVRLEC 421
+ + + + AP A + VR C
Sbjct: 87 L-CHFSVRVTDAPSSGDDEDGEDEAEDTGVDTGAPYWTRPERMDKKLLAVPAANTVRFRC 145
Query: 422 VAFGYPVPSYNWTRRGSPLPRNA-----YFENFNRILTIPNVKVEDQGEYICRASNDRSA 476
A G P PS +W + G + L + +V D+G Y C N +
Sbjct: 146 PAAGNPTPSISWLKNGREFRGEHRIGGIKLRHQQWSLVMESVVPSDRGNYTCVVENKFGS 205
Query: 477 LESSVTISIQAEPNFTIPLTDKHMDNQ-----ADLTWTCEAFGVPDVTYSWFRNGELLNS 531
+ + T+ + L NQ +D+ + C+ + W ++ E+ S
Sbjct: 206 IRQTYTLDVLERSPHRPILQAGLPANQTAVLGSDVEFHCKVYSDAQPHIQWLKHVEVNGS 265
Query: 532 E----------TLPLEDQDRYFIQDNVLTIRYLNPERDPAMYQCRAKNQLKTRYSSAQLR 581
+ L + + VL++ + E D Y C A N + + SA L
Sbjct: 266 KVGPDGTPYVTVLKTAGANTTDKELEVLSLHNVTFE-DAGEYTCLAGNSIGFSHHSAWLV 324
Query: 582 VLTLKPSFKK 591
VL + +
Sbjct: 325 VLPAEEELVE 334
Score = 123 bits (309), Expect = 1e-30
Identities = 61/351 (17%), Positives = 98/351 (27%), Gaps = 73/351 (20%)
Query: 190 PYFIKQPTDVVFDLSKRSILNDITLSCYA-GGYPNPSYEWFKEDYVQDRLVANLIDPL-S 247
Q +VF + + LSC GG P W K+ L
Sbjct: 9 GPEPGQQEQLVFGSG-----DAVELSCPPPGGGPMGPTVWVKDG-----------TGLVP 52
Query: 248 DKRFTLSGGNLIINDPRQVEDRGSYHCKASNKFGSIISESVQLAFGFIGEFNL--KRAPE 305
+R + L + + ED G+Y C+ + SV++ + + E
Sbjct: 53 SERVLVGPQRLQVLNASH-EDSGAYSCRQRLTQRVLCHFSVRVTDAPSSGDDEDGEDEAE 111
Query: 306 IGNQNWGKAMFCDPPTN---------------------YPGVNYYWARD--YFPNFVEED 342
+ G + P P + W ++ F
Sbjct: 112 DTGVDTGAPYWTRPERMDKKLLAVPAANTVRFRCPAAGNPTPSISWLKNGREFRGEHRIG 171
Query: 343 KRVFVSYDGALYFSALEQIDAGNYSCNVQSKVSDTGRNGPFFPLKVF---PHSNFQQLKF 399
+L ++ D GNY+C V++K G + L V PH Q
Sbjct: 172 GIKLRHQQWSLVMESVVPSDRGNYTCVVENKF---GSIRQTYTLDVLERSPHRPILQAGL 228
Query: 400 PNNFPKTFPEAPKAGDKVRLECVAFGYPVPSYNWTRRGSPLPR----------------- 442
P N +T G V C + P W +
Sbjct: 229 PAN--QTAVL----GSDVEFHCKVYSDAQPHIQWLKHVEVNGSKVGPDGTPYVTVLKTAG 282
Query: 443 NAYFENFNRILTIPNVKVEDQGEYICRASNDRSALESSVTISIQAEPNFTI 493
+ +L++ NV ED GEY C A N S + + +
Sbjct: 283 ANTTDKELEVLSLHNVTFEDAGEYTCLAGNSIGFSHHSAWLVVLPAEEELV 333
Score = 112 bits (281), Expect = 5e-27
Identities = 50/272 (18%), Positives = 78/272 (28%), Gaps = 60/272 (22%)
Query: 587 PSFKKRPLESETYAGEGGNVTIFCNPEAA-PKPKFVWKKDGNIIGSGGRRKIFENGNLLI 645
P + E G G V + C P P VW KDG + R + L +
Sbjct: 8 PGPEPGQQEQLV-FGSGDAVELSCPPPGGGPMGPTVWVKDGTGLVPSERVLVG-PQRLQV 65
Query: 646 SPVSRDDSGIYSCTATNVHGM---------------------DESKGRLIVLHGPSYYEQ 684
S +DSG YSC + DE++ + P +
Sbjct: 66 LNASHEDSGAYSCRQRLTQRVLCHFSVRVTDAPSSGDDEDGEDEAEDTGVDTGAPYWTRP 125
Query: 685 L---PPKITIAAHRNLQLRCSAH-----TEELLDVAYIWTHNGVRIGNMDLNELETPNIN 736
+ + A ++ RC A + W NG + + +
Sbjct: 126 ERMDKKLLAVPAANTVRFRCPAAGNPTPS-------ISWLKNGREFRGE--HRIGGIKLR 176
Query: 737 IDGGLLEITNASFADAGEYECVVKSTVGKISTKTTVIVEGPPGLPGGVQVVEVHKTSA-- 794
L + + +D G Y CVV++ G I T+ V +Q +A
Sbjct: 177 HQQWSLVMESVVPSDRGNYTCVVENKFGSIRQTYTLDVLERSPHRPILQAGLPANQTAVL 236
Query: 795 ----------------TIQWT-DGATNGRPIT 809
IQW NG +
Sbjct: 237 GSDVEFHCKVYSDAQPHIQWLKHVEVNGSKVG 268
Score = 67.7 bits (165), Expect = 3e-12
Identities = 40/220 (18%), Positives = 60/220 (27%), Gaps = 42/220 (19%)
Query: 181 ENPDKIPRGPYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVA 240
E+ PY+ + L+ N + C A G P PS W K
Sbjct: 111 EDTGVDTGAPYWTRPERMDKKLLA-VPAANTVRFRCPAAGNPTPSISWLKNG---REFRG 166
Query: 241 NLIDPLSDKRFTLSGGNLIINDPRQVEDRGSYHCKASNKFGSIISESVQL---------A 291
+ + +L++ DRG+Y C NKFGS I ++ L
Sbjct: 167 E--HRIGGIKLRHQQWSLVMESV-VPSDRGNYTCVVENKFGS-IRQTYTLDVLERSPHRP 222
Query: 292 FGFIGEFNLKRA-----------------PEIGNQNWGKAMFCDPPTNYPGVNYYWARDY 334
G + A P I W K + + P Y
Sbjct: 223 ILQAGLPANQTAVLGSDVEFHCKVYSDAQPHI---QWLKHVEVNGSKVGPD-----GTPY 274
Query: 335 FPNFVEEDKRVFVSYDGALYFSALEQIDAGNYSCNVQSKV 374
L + DAG Y+C + +
Sbjct: 275 VTVLKTAGANTTDKELEVLSLHNVTFEDAGEYTCLAGNSI 314
Score = 54.6 bits (131), Expect = 6e-08
Identities = 20/111 (18%), Positives = 28/111 (25%), Gaps = 14/111 (12%)
Query: 187 PRGPYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYV-------QDRLV 239
R P + L D+ C P +W K V
Sbjct: 220 HRPILQAGLPANQTAVLGS-----DVEFHCKVYSDAQPHIQWLKHVEVNGSKVGPDGTPY 274
Query: 240 ANLIDPLSDKRFTLSGGNLIINDPRQVEDRGSYHCKASNKFGSIISESVQL 290
++ L +++ ED G Y C A N G S L
Sbjct: 275 VTVLKTAGANTTDKELEVLSLHNV-TFEDAGEYTCLAGNSIGF-SHHSAWL 323
>1qz1_A Neural cell adhesion molecule 1, 140 kDa isoform; IG modules, NCAM;
2.00A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4
PDB: 1ie5_A
Length = 291
Score = 201 bits (513), Expect = 2e-58
Identities = 60/280 (21%), Positives = 104/280 (37%), Gaps = 22/280 (7%)
Query: 413 AGDKVRLECVAFGYP-VPSYNWTRR-GSPLPRN------AYFENFNRILTIPNVKVEDQG 464
G+ C G +W G L N + ++ + LTI N ++D G
Sbjct: 16 VGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDDSSTLTIYNANIDDAG 75
Query: 465 EYICRASNDR-SALESSVTISIQAEPNFTIPLTDKHMDNQADLTWTCEAFGVPDVTYSWF 523
Y C + + + E++V + I + F T + D C+ T W
Sbjct: 76 IYKCVVTAEDGTQSEATVNVKIFQKLMFKNAPTPQEFKEGEDAVIVCDVVSSLPPTIIWK 135
Query: 524 RNGELLNSETLPLEDQDRYFIQ-DNVLTIRYLNPERDPAMYQCRAKNQLKTRYSSAQLRV 582
G + L+ R+ + +N L IR + D Y+C + + + ++V
Sbjct: 136 HKGR-----DVILKKDVRFIVLSNNYLQIRGIKKT-DEGTYRCEGRILARGEINFKDIQV 189
Query: 583 LTL-KPSFKKRPLESETYAGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGG-----RRK 636
+ P+ + R A G +VT+ C+ + P+P W KDG I +
Sbjct: 190 IVNVPPTVQARQSIVNATANLGQSVTLVCDADGFPEPTMSWTKDGEPIENEEEDDEKHIF 249
Query: 637 IFENGNLLISPVSRDDSGIYSCTATNVHGMDESKGRLIVL 676
++ L I V ++D Y C A N G ++ L V
Sbjct: 250 SDDSSELTIRNVDKNDEAEYVCIAENKAGEQDASIHLKVF 289
Score = 159 bits (404), Expect = 1e-43
Identities = 62/304 (20%), Positives = 110/304 (36%), Gaps = 36/304 (11%)
Query: 489 PNFTIPLTDKHMDNQADLTWTCEAFGVPDV-TYSWFR-NGELLNSETLPLEDQDRYFIQD 546
I + + + C+ G SWF NGE L+ +Q R +
Sbjct: 3 LQVDIVPSQGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSP------NQQRISVVW 56
Query: 547 N-----VLTIRYLNPERDPAMYQCRAKNQLKTRYS-SAQLRVLTLKPSFKKRPLESETYA 600
N LTI N + D +Y+C + T+ + +++ K FK P +
Sbjct: 57 NDDDSSTLTIYNANID-DAGIYKCVVTAEDGTQSEATVNVKIFQ-KLMFKNAP--TPQEF 112
Query: 601 GEGGNVTIFCNPEAAPKPKFVWKKDGNII--GSGGRRKIFENGNLLISPVSRDDSGIYSC 658
EG + I C+ ++ P +WK G + R + N L I + + D G Y C
Sbjct: 113 KEGEDAVIVCDVVSSLPPTIIWKHKGRDVILKKDVRFIVLSNNYLQIRGIKKTDEGTYRC 172
Query: 659 TATNVHGMDESKGRLIV-LHGPSYYEQLPPKITIAAH--RNLQLRCSAHTEELLDVAY-- 713
+ + + + V ++ P + + A+ +++ L C A +
Sbjct: 173 EGRILARGEINFKDIQVIVNVPPTVQARQSIVNATANLGQSVTLVCDAD-------GFPE 225
Query: 714 ---IWTHNGVRIGNMDLNELETPNINIDGGLLEITNASFADAGEYECVVKSTVGKISTKT 770
WT +G I + + E + D L I N D EY C+ ++ G+
Sbjct: 226 PTMSWTKDGEPI-ENEEEDDEKHIFSDDSSELTIRNVDKNDEAEYVCIAENKAGEQDASI 284
Query: 771 TVIV 774
+ V
Sbjct: 285 HLKV 288
Score = 138 bits (349), Expect = 2e-36
Identities = 58/290 (20%), Positives = 100/290 (34%), Gaps = 43/290 (14%)
Query: 315 MFCDPPTNYPGVNYYWARDYFPNFVEEDKRVFVSYD----GALYFSALEQIDAGNYSCNV 370
C + + W +R+ V ++ L DAG Y C V
Sbjct: 22 FLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDDSSTLTIYNANIDDAGIYKCVV 81
Query: 371 Q----SKVSDTGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPEAPK-----AGDKVRLEC 421
++ T +K+F F AP G+ + C
Sbjct: 82 TAEDGTQSEATVN------VKIFQ-------------KLMFKNAPTPQEFKEGEDAVIVC 122
Query: 422 VAFGYPVPSYNWTRRGSPLP---RNAYFENFNRILTIPNVKVEDQGEYICRASNDRSALE 478
P+ W +G + + N L I +K D+G Y C
Sbjct: 123 DVVSSLPPTIIWKHKGRDVILKKDVRFIVLSNNYLQIRGIKKTDEGTYRCEGRILARGEI 182
Query: 479 SS--VTISIQAEPNFTIP--LTDKHMDNQADLTWTCEAFGVPDVTYSWFRNGELLNSETL 534
+ + + + P + + + +T C+A G P+ T SW ++GE + +E
Sbjct: 183 NFKDIQVIVNVPPTVQARQSIVNATANLGQSVTLVCDADGFPEPTMSWTKDGEPIENE-- 240
Query: 535 PLEDQDRYFIQDN-VLTIRYLNPERDPAMYQCRAKNQLKTRYSSAQLRVL 583
+D+ F D+ LTIR ++ D A Y C A+N+ + +S L+V
Sbjct: 241 EEDDEKHIFSDDSSELTIRNVDKN-DEAEYVCIAENKAGEQDASIHLKVF 289
Score = 137 bits (347), Expect = 4e-36
Identities = 60/314 (19%), Positives = 105/314 (33%), Gaps = 38/314 (12%)
Query: 188 RGPYFIKQPTDVVFDLSKRSILNDITLSCYAGGYP-NPSYEWFKEDYVQDRLVANLIDPL 246
R P+ + + C G + WF +
Sbjct: 1 RVLQVDIVPSQGEISVGE-----SKFFLCQVAGDAKDKDISWFSPN--------GEKLSP 47
Query: 247 SDKRFTL-----SGGNLIINDPRQVEDRGSYHCKASNKFGSIISESVQLAFGFIGEFNLK 301
+ +R ++ L I + ++D G Y C + + G+ +V + + K
Sbjct: 48 NQQRISVVWNDDDSSTLTIYNA-NIDDAGIYKCVVTAEDGTQSEATVNVKI--FQKLMFK 104
Query: 302 RAPEIGNQNWGKA--MFCDPPTNYPGVNYYWARDYFPNFVEEDKRVFVSYDGALYFSALE 359
AP G+ + CD + W +++D R V + L ++
Sbjct: 105 NAPTPQEFKEGEDAVIVCDV-VSSLPPTIIWKHKGRDVILKKDVRFIVLSNNYLQIRGIK 163
Query: 360 QIDAGNYSCNVQSKVSDTGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPEAPKAGDKVRL 419
+ D G Y C + + V Q + N T G V L
Sbjct: 164 KTDEGTYRCEGRILARGEINFKDIQ-VIVNVPPTVQARQSIVN--ATANL----GQSVTL 216
Query: 420 ECVAFGYPVPSYNWTRRGSPLPRNA------YFENFNRILTIPNVKVEDQGEYICRASND 473
C A G+P P+ +WT+ G P+ F + + LTI NV D+ EY+C A N
Sbjct: 217 VCDADGFPEPTMSWTKDGEPIENEEEDDEKHIFSDDSSELTIRNVDKNDEAEYVCIAENK 276
Query: 474 RSALESSVTISIQA 487
++S+ + + A
Sbjct: 277 AGEQDASIHLKVFA 290
Score = 106 bits (265), Expect = 2e-25
Identities = 34/202 (16%), Positives = 52/202 (25%), Gaps = 19/202 (9%)
Query: 587 PSFKKRPLESETYAGEGGNVTIFCNPEAAPK-PKFVWKKDGN--IIGSGGRRKIFEN--- 640
P S+ G + C K W + + R + N
Sbjct: 3 LQVDIVP--SQGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDD 60
Query: 641 -GNLLISPVSRDDSGIYSCTATNVHGMDES-KGRLIVLHGPSYYEQLPPKITIAAHRNLQ 698
L I + DD+GIY C T G + + + P +
Sbjct: 61 SSTLTIYNANIDDAGIYKCVVTAEDGTQSEATVNVKIFQKLMFKNA-PTPQEFKEGEDAV 119
Query: 699 LRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEITNASFADAGEYECV 758
+ C + + W H G + + L+I D G Y C
Sbjct: 120 IVCDVVSSLPPTII--WKHKGRDVILKKDVRFIV----LSNNYLQIRGIKKTDEGTYRCE 173
Query: 759 VKSTVGK--ISTKTTVIVEGPP 778
+ VIV PP
Sbjct: 174 GRILARGEINFKDIQVIVNVPP 195
Score = 89.2 bits (221), Expect = 2e-19
Identities = 39/202 (19%), Positives = 67/202 (33%), Gaps = 32/202 (15%)
Query: 185 KIPRGPYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLID 244
KI + F PT F + D + C P+ W + +
Sbjct: 96 KIFQKLMFKNAPTPQEFKEGE-----DAVIVCDVVSSLPPTIIWKHKG--------RDVI 142
Query: 245 PLSDKRFT-LSGGNLIINDPRQVEDRGSYHCKASNKFGSIISE-SVQLAFGFIGEFNLKR 302
D RF LS L I + D G+Y C+ I+ +Q+ ++
Sbjct: 143 LKKDVRFIVLSNNYLQIRGI-KKTDEGTYRCEGRILARGEINFKDIQVIVNVPPTVQARQ 201
Query: 303 APEIGNQNWGKAMF--CD-----PPTNYPGVNYYWARDYFP---NFVEEDKRVFVSYDGA 352
+ N G+++ CD PT W +D P +++K +F
Sbjct: 202 SIVNATANLGQSVTLVCDADGFPEPTM------SWTKDGEPIENEEEDDEKHIFSDDSSE 255
Query: 353 LYFSALEQIDAGNYSCNVQSKV 374
L +++ D Y C ++K
Sbjct: 256 LTIRNVDKNDEAEYVCIAENKA 277
>2y25_A Myomesin; structural protein, sarcomere, M-BAND,
immunoglobulin-like D; 3.50A {Homo sapiens}
Length = 317
Score = 192 bits (489), Expect = 8e-55
Identities = 54/314 (17%), Positives = 88/314 (28%), Gaps = 51/314 (16%)
Query: 406 TFPEAPK----AGDKVRLECVAFGY-PVPSYNWTRRGSPLPRNA--YFENFNRILTIPNV 458
F E V L+C W + + + F++ L I
Sbjct: 9 HFVEYLSWEVTGECNVLLKCKVANIKKETHIVWYKDEREISVDEKHDFKDGICTLLITEF 68
Query: 459 KVEDQGEYICRASNDRSALESSVTISIQAEPNFTIPLTDKHMDNQADLTWTCEA------ 512
+D G Y +DR +S + + +A + + K + DL A
Sbjct: 69 SKKDAGIYEVILKDDRGKDKSRLKLVDEAFKELMMEVCKKIALSATDLKIQSTAEGIQLY 128
Query: 513 ----FGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQDN----VLTIRYLNPERDPAMYQ 564
+ V D+ +W NG + DR L I P D Y
Sbjct: 129 SFVTYYVEDLKVNWSHNGS-------AIRYSDRVKTGVTGEQIWLQINEPTPN-DKGKYV 180
Query: 565 CRAKNQLKTRYSSAQLRVLTLKPSFKK------------------RPLESETYAGEGGNV 606
+ + L ++ + L EG +
Sbjct: 181 MELFDGKTGHQKTVDLSGQAYDEAYAEFQRLKQAAIAEKNRARVLGGLPDVVTIQEGKAL 240
Query: 607 TIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFE----NGNLLISPVSRDDSGIYSCTATN 662
+ CN P P+ W K+ + S + I+ VS DSG Y N
Sbjct: 241 NLTCNVWGDPPPEVSWLKNEKALASDDHCNLKFEAGRTAYFTINGVSTADSGKYGLVVKN 300
Query: 663 VHGMDESKGRLIVL 676
+G + S + V
Sbjct: 301 KYGSETSDFTVSVF 314
Score = 162 bits (410), Expect = 3e-44
Identities = 53/328 (16%), Positives = 98/328 (29%), Gaps = 58/328 (17%)
Query: 489 PNFTIPLTDKHMDNQADLTWTCEAFGVPDVT-YSWFRNGELLNSETLPLEDQDRYFIQDN 547
P+F L+ + ++ C+ + T W+++ + +++ +D
Sbjct: 8 PHFVEYLSWEVTGEC-NVLLKCKVANIKKETHIVWYKDER-------EISVDEKHDFKDG 59
Query: 548 V--LTIRYLNPERDPAMYQCRAKNQLKTRYSSAQLRVLTLKPSFKKRPLESETYAGE--- 602
+ L I + + D +Y+ K+ S +L + +
Sbjct: 60 ICTLLITEFSKK-DAGIYEVILKDDRGKDKSRLKLVDEA-FKELMMEVCKKIALSATDLK 117
Query: 603 -----GGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGN---LLISPVSRDDSG 654
G K W +G+ I R K G L I+ + +D G
Sbjct: 118 IQSTAEGIQLYSFVTYYVEDLKVNWSHNGSAIRYSDRVKTGVTGEQIWLQINEPTPNDKG 177
Query: 655 IYSCTATNVHGMDESKGRLIVL--------------------HGPSYYEQLPPKITIAAH 694
Y + + L + LP +TI
Sbjct: 178 KYVMELFDGKTGHQKTVDLSGQAYDEAYAEFQRLKQAAIAEKNRARVLGGLPDVVTIQEG 237
Query: 695 RNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINI-----DGGLLEITNASF 749
+ L L C+ + +V W N + + N+ I S
Sbjct: 238 KALNLTCNVWGDPPPEV--SWLKNEKAL-------ASDDHCNLKFEAGRTAYFTINGVST 288
Query: 750 ADAGEYECVVKSTVGKISTKTTVIVEGP 777
AD+G+Y VVK+ G ++ TV V P
Sbjct: 289 ADSGKYGLVVKNKYGSETSDFTVSVFIP 316
Score = 139 bits (351), Expect = 2e-36
Identities = 55/331 (16%), Positives = 96/331 (29%), Gaps = 54/331 (16%)
Query: 189 GPYFIKQPTDVVFDLSKRSILNDITLSCYAGGY-PNPSYEWFKEDYVQDRLVANLIDPLS 247
GP+F++ + V ++ L C W+K++ I
Sbjct: 7 GPHFVEYLSWEVTGEC------NVLLKCKVANIKKETHIVWYKDE--------REISV-- 50
Query: 248 DKRFTLSGGN--LIINDPRQVEDRGSYHCKASNKFGSIISE---SVQLAFGFIGEFNLKR 302
D++ G L+I + +D G Y + G S + + E K
Sbjct: 51 DEKHDFKDGICTLLITEF-SKKDAGIYEVILKDDRGKDKSRLKLVDEAFKELMMEVCKKI 109
Query: 303 APEIGNQNW-----GKAMFCDPPTNYPGVNYYWARDYFPNFVEEDKRVFVSYDG---ALY 354
A + G ++ + W+ + + RV G L
Sbjct: 110 ALSATDLKIQSTAEGIQLYSFVTYYVEDLKVNWSHNGSA--IRYSDRVKTGVTGEQIWLQ 167
Query: 355 FSALEQIDAGNYSCNVQSKVSDTGRNGPFFPLKVF----PHSNFQQLKFP----NNFPKT 406
+ D G Y + + L ++ FQ+LK N +
Sbjct: 168 INEPTPNDKGKYVMELFDGK---TGHQKTVDLSGQAYDEAYAEFQRLKQAAIAEKNRARV 224
Query: 407 FPEAPK-----AGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYF-----ENFNRILTIP 456
P G + L C +G P P +W + L + + TI
Sbjct: 225 LGGLPDVVTIQEGKALNLTCNVWGDPPPEVSWLKNEKALASDDHCNLKFEAGRTAYFTIN 284
Query: 457 NVKVEDQGEYICRASNDRSALESSVTISIQA 487
V D G+Y N + S T+S+
Sbjct: 285 GVSTADSGKYGLVVKNKYGSETSDFTVSVFI 315
Score = 118 bits (298), Expect = 2e-29
Identities = 40/217 (18%), Positives = 71/217 (32%), Gaps = 25/217 (11%)
Query: 586 KPSFKKRPLESETYAGEGGNVTIFCNPEAAPK-PKFVWKKDGNIIGSGGRRKIFENGN-L 643
P F + L E NV + C K VW KD I + + L
Sbjct: 7 GPHFVE-YLSWEVT--GECNVLLKCKVANIKKETHIVWYKDEREISVDEKHDFKDGICTL 63
Query: 644 LISPVSRDDSGIYSCTATNVHGMDESKGRLIVLHGPSYYEQLPPKITIAAHRNLQLRCSA 703
LI+ S+ D+GIY + G D+S+ +L+ K + +L+++ +A
Sbjct: 64 LITEFSKKDAGIYEVILKDDRGKDKSRLKLVD-EAFKELMMEVCKKIALSATDLKIQSTA 122
Query: 704 HTEELLDVAY--------IWTHNGVRIGNMDLNELETPNINI----DGGLLEITNASFAD 751
+L W+HNG I + + + L+I + D
Sbjct: 123 EGIQLYSFVTYYVEDLKVNWSHNGSAI-------RYSDRVKTGVTGEQIWLQINEPTPND 175
Query: 752 AGEYECVVKSTVGKISTKTTVIVEGPPGLPGGVQVVE 788
G+Y + + + Q ++
Sbjct: 176 KGKYVMELFDGKTGHQKTVDLSGQAYDEAYAEFQRLK 212
>1cfb_A Drosophila neuroglian; neural adhesion molecule; HET: NAG; 2.00A
{Drosophila melanogaster} SCOP: b.1.2.1 b.1.2.1
Length = 205
Score = 182 bits (464), Expect = 7e-53
Identities = 56/208 (26%), Positives = 90/208 (43%), Gaps = 15/208 (7%)
Query: 773 IVEGPPGLPGGVQVVEVHKTSATIQWTDGATNGRPITHYKIIARTNWNS-TWFNVSEHVI 831
IV+ P P + A I W N PI HY I T++ +W E V
Sbjct: 1 IVQDVPNAPKLT-GITCQADKAEIHWEQQGDNRSPILHYTIQFNTSFTPASWDAAYEKVP 59
Query: 832 GKEVDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPSPQYNTPADKPYQAPSR 891
+ + PW+ Y F+VIA N++G PS+ S T D P++ P
Sbjct: 60 NTDSSFVVQ---------MSPWANYTFRVIAFNKIGASPPSAHSDSCTTQPDVPFKNPDN 110
Query: 892 IGGGGGKIGDLSISWEPLPREKQNAPNIYYKIFWRKKN-DTEFQSETLKEYGNVGIAVVR 950
+ G G + +L ISW P+P + NAPN +Y + W++ +++ + + +
Sbjct: 111 VVGQGTEPNNLVISWTPMPEIEHNAPNFHYYVSWKRDIPAAAWENNNIF---DWRQNNIV 167
Query: 951 IPSEFYYTEYEVKVQAINDVGPGPESEV 978
I + + +Y +KV AIND G +
Sbjct: 168 IADQPTFVKYLIKVVAINDRGESNVAAE 195
Score = 61.7 bits (150), Expect = 9e-11
Identities = 17/112 (15%), Positives = 36/112 (32%), Gaps = 10/112 (8%)
Query: 775 EGPPGLPGGVQVVEVHKTSATIQWT--DGATNGRPITHYKIIARTNWNSTWFNVSEHVIG 832
+ P P V + I WT + P HY + + + + + + +
Sbjct: 102 DVPFKNPDNVVGQGTEPNNLVISWTPMPEIEHNAPNFHYYVSWKRDIPAAAWENNN-IFD 160
Query: 833 KEVDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPSPQYNTPADK 884
+ I + + Y KV+A N+ G ++ + D+
Sbjct: 161 WRQNNIV------IAD-QPTFVKYLIKVVAINDRGESNVAAEEVVGYSGEDR 205
>2yd9_A Receptor-type tyrosine-protein phosphatase S; hydrolase; HET: NAG
B3P; 2.60A {Homo sapiens}
Length = 304
Score = 184 bits (468), Expect = 3e-52
Identities = 72/312 (23%), Positives = 116/312 (37%), Gaps = 31/312 (9%)
Query: 484 SIQAEPNFTIPLTDKHMDNQADLTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYF 543
+ + P F D+ + ++ C+A G P +W + G+ +NS+ + F
Sbjct: 2 TGEEPPRFIKEPKDQIGVSGGVASFVCQATGDPKPRVTWNKKGKKVNSQ----RFETIEF 57
Query: 544 IQDN--VLTIRYLNPERDPAMYQCRAKNQLKTRYSSAQLRVLTLK------PSFKKRPLE 595
+ VL I+ L RD +Y+C A+N + A+L VL P+ P
Sbjct: 58 DESAGAVLRIQPLRTPRDENVYECVAQNSVGEITVHAKLTVLREDQLPSGFPNIDMGP-- 115
Query: 596 SETYAGEGGNVTIFCNPEAAPKPKFVWKKDGNII---GSGGRRKIFENGNLLISPVSRDD 652
T+ C P P+ W KD + S GR K +G L I D
Sbjct: 116 QLKVVERTRTATMLCAASGNPDPEITWFKDFLPVDPSASNGRIKQLRSGALQIESSEETD 175
Query: 653 SGIYSCTATNVHGMDESKG---RLIVLHGPSYYEQLPPKITIAAHRNLQLRCSAHTEELL 709
G Y C ATN G+ S + V + + LP I N+ + C A +
Sbjct: 176 QGKYECVATNSAGVRYSSPANLYVRVQNVAPRFSILPMSHEIMPGGNVNITCVAVGSPMP 235
Query: 710 DVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEITNASFADAGEYECVVKSTVGKISTK 769
V W + ++ + +LE+T+ D+ Y CV S++G I
Sbjct: 236 YV--KWMQGAEDL-------TPEDDMPVGRNVLELTDVK--DSANYTCVAMSSLGVIEAV 284
Query: 770 TTVIVEGPPGLP 781
+ V+ P
Sbjct: 285 AQITVKSLPKAG 296
Score = 151 bits (384), Expect = 7e-41
Identities = 65/325 (20%), Positives = 102/325 (31%), Gaps = 43/325 (13%)
Query: 190 PYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDK 249
P FIK+P D + + C A G P P W K+ ++ +
Sbjct: 7 PRFIKEPKDQIGVSGG-----VASFVCQATGDPKPRVTWNKKG--------KKVNSQRFE 53
Query: 250 RFTL---SGGNLIINDPRQVEDRGSYHCKASNKFGSIISE---SVQLAFGFIGEF-NLKR 302
+G L I R D Y C A N G I +V F N+
Sbjct: 54 TIEFDESAGAVLRIQPLRTPRDENVYECVAQNSVGEITVHAKLTVLREDQLPSGFPNIDM 113
Query: 303 APEIGNQNWGKA--MFCDPPTNYPGVNYYWARDYFP-NFVEEDKRVFVSYDGALYFSALE 359
P++ + M C + P W +D+ P + + R+ GAL + E
Sbjct: 114 GPQLKVVERTRTATMLC-AASGNPDPEITWFKDFLPVDPSASNGRIKQLRSGALQIESSE 172
Query: 360 QIDAGNYSCNVQSKVSDTGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPEAPK-----AG 414
+ D G Y C + + ++V F P G
Sbjct: 173 ETDQGKYECVATNSAGVRYSSPANLYVRVQN------------VAPRFSILPMSHEIMPG 220
Query: 415 DKVRLECVAFGYPVPSYNWTRRGSPLPRNAYFENFNRILTIPNVKVEDQGEYICRASNDR 474
V + CVA G P+P W + L + V+D Y C A +
Sbjct: 221 GNVNITCVAVGSPMPYVKWMQGAEDLTPEDDMPVGR--NVLELTDVKDSANYTCVAMSSL 278
Query: 475 SALESSVTISIQAEPNFTIPLTDKH 499
+E+ I++++ P H
Sbjct: 279 GVIEAVAQITVKSLPKAGTKHHHHH 303
Score = 73.7 bits (181), Expect = 3e-14
Identities = 45/208 (21%), Positives = 64/208 (30%), Gaps = 43/208 (20%)
Query: 181 ENPDKIPRGPYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVA 240
P P V + ++ T+ C A G P+P WFK+
Sbjct: 100 REDQLPSGFPNIDMGPQLKVVERTR-----TATMLCAASGNPDPEITWFKDF-------- 146
Query: 241 NLIDP-LSDKRFT-LSGGNLIINDPRQVEDRGSYHCKASNKFGSIISESVQL-------A 291
+DP S+ R L G L I + D+G Y C A+N G S L A
Sbjct: 147 LPVDPSASNGRIKQLRSGALQIESSEE-TDQGKYECVATNSAGVRYSSPANLYVRVQNVA 205
Query: 292 FGFIGEFNLKRAPEIGNQNWGKAMF-C----DPPTNYPGVNYYWARDYFPNFVEEDKRVF 346
F G G C P P V W + + + +
Sbjct: 206 PRFSILPMSHEIMP-G----GNVNITCVAVGSPM---PYVK--WMQGAED--LTPEDDMP 253
Query: 347 VSYDGALYFSALEQIDAGNYSCNVQSKV 374
V G + D+ NY+C S +
Sbjct: 254 V---GRNVLELTDVKDSANYTCVAMSSL 278
Score = 59.5 bits (144), Expect = 1e-09
Identities = 30/151 (19%), Positives = 48/151 (31%), Gaps = 35/151 (23%)
Query: 686 PPKI-------TIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINID 738
PP+ + C A + V W G ++ + +E
Sbjct: 6 PPRFIKEPKDQIGVSGGVASFVCQATGDPKPRV--TWNKKGKKVNSQRFETIEFDESA-- 61
Query: 739 GGLLEITNASFA-DAGEYECVVKSTVGKISTKTTVIVEGPPGLPGGV---------QVVE 788
G +L I D YECV +++VG+I+ + V LP G +VVE
Sbjct: 62 GAVLRIQPLRTPRDENVYECVAQNSVGEITVHAKLTVLREDQLPSGFPNIDMGPQLKVVE 121
Query: 789 VHKT-----------SATIQWTDGATNGRPI 808
+T I W + P+
Sbjct: 122 RTRTATMLCAASGNPDPEITWF---KDFLPV 149
>3s97_C Contactin-1; carbonic anhdyrase like immunoglobulin, cell adhesion
comple adhesion; HET: NAG; 2.30A {Homo sapiens}
Length = 201
Score = 175 bits (446), Expect = 2e-50
Identities = 67/201 (33%), Positives = 95/201 (47%), Gaps = 6/201 (2%)
Query: 291 AFGFIGEFNLKRAPEI-GNQNWGKAMFCDPPTNYPG-VNYYWARDYFPNFVEEDKRVFVS 348
G++ F + PE+ + G + CDPP ++P ++Y W + FP F+ DKR FVS
Sbjct: 3 GSGYLDPFPPEERPEVRVKEGKGMVLLCDPPYHFPDDLSYRWLLNEFPVFITMDKRRFVS 62
Query: 349 -YDGALYFSALEQIDAGNYSCNVQSKVSDTGRNGPFFPLKVFPHSNFQQLKFPNNFPKTF 407
+G LY + +E D GNYSC V S F PL P + +P + F
Sbjct: 63 QTNGNLYIANVEASDKGNYSCFVSSPSITKSVFSKFIPLIPIPERTTKP--YPADIVVQF 120
Query: 408 PEA-PKAGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYFENFNRILTIPNVKVEDQGEY 466
+ G V LEC A G PVP W + P+P A +L I N+++ED+G Y
Sbjct: 121 KDVYALMGQNVTLECFALGNPVPDIRWRKVLEPMPSTAEISTSGAVLKIFNIQLEDEGIY 180
Query: 467 ICRASNDRSALESSVTISIQA 487
C A N R + I +QA
Sbjct: 181 ECEAENIRGKDKHQARIYVQA 201
Score = 125 bits (316), Expect = 5e-33
Identities = 43/206 (20%), Positives = 69/206 (33%), Gaps = 25/206 (12%)
Query: 585 LKPSFKKRPLESETYAGEGGNVTIFCNPEAAPKP--KFVWKKDGNII---GSGGRRKIFE 639
L P + E EG + + C+P + W + + R
Sbjct: 7 LDPFPPEER--PEVRVKEGKGMVLLCDPPYHFPDDLSYRWLLNEFPVFITMDKRRFVSQT 64
Query: 640 NGNLLISPVSRDDSGIYSCTATNVHGMDESKGRLIVL---------HGPSYYEQLPPKIT 690
NGNL I+ V D G YSC ++ + I L P+ +
Sbjct: 65 NGNLYIANVEASDKGNYSCFVSSPSITKSVFSKFIPLIPIPERTTKPYPADIVVQFKDVY 124
Query: 691 IAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEITNASFA 750
+N+ L C A + D+ W + T I+ G +L+I N
Sbjct: 125 ALMGQNVTLECFALGNPVPDI--RWRKVLEPM-------PSTAEISTSGAVLKIFNIQLE 175
Query: 751 DAGEYECVVKSTVGKISTKTTVIVEG 776
D G YEC ++ GK + + V+
Sbjct: 176 DEGIYECEAENIRGKDKHQARIYVQA 201
Score = 124 bits (314), Expect = 1e-32
Identities = 42/181 (23%), Positives = 65/181 (35%), Gaps = 16/181 (8%)
Query: 505 DLTWTCEAFG--VPDVTYSWFRNGELLNSETLPLEDQDRYFIQDN-VLTIRYLNPERDPA 561
+ C+ D++Y W N + D+ R+ Q N L I + D
Sbjct: 25 GMVLLCDPPYHFPDDLSYRWLLNEFPVFIT----MDKRRFVSQTNGNLYIANVEAS-DKG 79
Query: 562 MYQCRAKNQLKTRYSSAQLRVLTLKPSFKKRPLE-------SETYAGEGGNVTIFCNPEA 614
Y C + T+ ++ L P +P + YA G NVT+ C
Sbjct: 80 NYSCFVSSPSITKSVFSKFIPLIPIPERTTKPYPADIVVQFKDVYALMGQNVTLECFALG 139
Query: 615 APKPKFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTATNVHGMDESKGRLI 674
P P W+K + L I + +D GIY C A N+ G D+ + R+
Sbjct: 140 NPVPDIRWRKVLEPM-PSTAEISTSGAVLKIFNIQLEDEGIYECEAENIRGKDKHQARIY 198
Query: 675 V 675
V
Sbjct: 199 V 199
Score = 109 bits (275), Expect = 2e-27
Identities = 41/197 (20%), Positives = 61/197 (30%), Gaps = 29/197 (14%)
Query: 407 FPEAP-----KAGDKVRLECVAFGYPVP--SYNWTRRGSPLPRNAYFENF----NRILTI 455
PE K G + L C + SY W P+ F N L I
Sbjct: 11 PPEERPEVRVKEGKGMVLLCDPPYHFPDDLSYRWLLNEFPVFITMDKRRFVSQTNGNLYI 70
Query: 456 PNVKVEDQGEYICRASNDRSALESSVT----------ISIQAEPNFTIPLTDKHMDNQAD 505
NV+ D+G Y C S+ + + + D + +
Sbjct: 71 ANVEASDKGNYSCFVSSPSITKSVFSKFIPLIPIPERTTKPYPADIVVQFKDVYALMGQN 130
Query: 506 LTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQDNVLTIRYLNPERDPAMYQC 565
+T C A G P W + E P+ VL I + E D +Y+C
Sbjct: 131 VTLECFALGNPVPDIRWRKVLE-------PMPSTAEISTSGAVLKIFNIQLE-DEGIYEC 182
Query: 566 RAKNQLKTRYSSAQLRV 582
A+N A++ V
Sbjct: 183 EAENIRGKDKHQARIYV 199
Score = 68.8 bits (168), Expect = 3e-13
Identities = 28/105 (26%), Positives = 42/105 (40%), Gaps = 19/105 (18%)
Query: 187 PRGPYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPL 246
P + Q DV + + ++TL C+A G P P W K +P+
Sbjct: 111 PYPADIVVQFKDVYALMGQ-----NVTLECFALGNPVPDIRWRKVL-----------EPM 154
Query: 247 -SDKRFTLSGGNLIINDPRQVEDRGSYHCKASNKFGSIISESVQL 290
S + SG L I + Q+ED G Y C+A N G ++
Sbjct: 155 PSTAEISTSGAVLKIFNI-QLEDEGIYECEAENIRGK-DKHQARI 197
Score = 63.8 bits (155), Expect = 1e-11
Identities = 32/205 (15%), Positives = 59/205 (28%), Gaps = 45/205 (21%)
Query: 190 PYFIKQPTDVVFDLSKRSILNDITLSCYA-GGYPNP-SYEWFKEDYVQDRLVANLIDPLS 247
P+ ++ +V + L C +P+ SY W ++ + +
Sbjct: 9 PFPPEERPEVRVKEG-----KGMVLLCDPPYHFPDDLSYRWLLNEFP-------VFITMD 56
Query: 248 DKRFT-LSGGNLIINDPRQVEDRGSYHCKASNKFGSIISESVQLAFGFIGEFNLKRAPEI 306
+RF + GNL I + D+G+Y C S+ + S + I E K P
Sbjct: 57 KRRFVSQTNGNLYIANVEA-SDKGNYSCFVSSPSITKSVFSKFIPLIPIPERTTKPYP-- 113
Query: 307 GNQNWGKAMFCDPPTN-----------------YPGVNYYWARDYFPNFVEEDKRVFVSY 349
A + P + W + +
Sbjct: 114 -------ADIVVQFKDVYALMGQNVTLECFALGNPVPDIRWRKV---LEPMPSTAEISTS 163
Query: 350 DGALYFSALEQIDAGNYSCNVQSKV 374
L ++ D G Y C ++
Sbjct: 164 GAVLKIFNIQLEDEGIYECEAENIR 188
>2iep_A Muscle-specific kinase receptor; beta-sandwich, signaling
protein,transferase; 2.21A {Rattus norvegicus}
Length = 192
Score = 175 bits (445), Expect = 2e-50
Identities = 53/194 (27%), Positives = 76/194 (39%), Gaps = 12/194 (6%)
Query: 485 IQAEPNFTIPLTDKHMDNQADLTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFI 544
+ P T PL + T+ C P SW RN L+ RY I
Sbjct: 4 LPKAPVITTPLETVDALVEEVATFMCAVESYPQPEISWTRNKILIK------LFDTRYSI 57
Query: 545 QDN--VLTIRYLNPERDPAMYQCRAKNQLKTRYSSAQLRVLTLKPSFKKRPLESETYAGE 602
++N +LTI + D +Y C A N + S + +KP + P E
Sbjct: 58 RENGQLLTILSVEDS-DDGIYCCTANNGVGGAVESCGALQVKMKPKITRPP--INVKIIE 114
Query: 603 GGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTATN 662
G + C PKP W K + + R + E+G+L I V ++D+G Y C A N
Sbjct: 115 GLKAVLPCTTMGNPKPSVSWIKGDSALRENSRIAVLESGSLRIHNVQKEDAGQYRCVAKN 174
Query: 663 VHGMDESKG-RLIV 675
G SK +L V
Sbjct: 175 SLGTAYSKLVKLEV 188
Score = 131 bits (331), Expect = 5e-35
Identities = 48/178 (26%), Positives = 73/178 (41%), Gaps = 16/178 (8%)
Query: 412 KAGDKVRLECVAFGYPVPSYNWTRRGSPLP----RNAYFENFNRILTIPNVKVEDQGEYI 467
+ C YP P +WTR + R + EN ++LTI +V+ D G Y
Sbjct: 20 LVEEVATFMCAVESYPQPEISWTRNKILIKLFDTRYSIREN-GQLLTILSVEDSDDGIYC 78
Query: 468 CRASND-RSALESSVTISIQAEPNFTIPLTDKHMDNQADLTWTCEAFGVPDVTYSWFRNG 526
C A+N A+ES + ++ +P T P + + C G P + SW +
Sbjct: 79 CTANNGVGGAVESCGALQVKMKPKITRPPINVKIIEGLKAVLPCTTMGNPKPSVSWIKGD 138
Query: 527 ELLNSETLPLEDQDRYFIQDN-VLTIRYLNPERDPAMYQCRAKNQLKTRYSS-AQLRV 582
L + R + ++ L I + E D Y+C AKN L T YS +L V
Sbjct: 139 S-------ALRENSRIAVLESGSLRIHNVQKE-DAGQYRCVAKNSLGTAYSKLVKLEV 188
Score = 127 bits (320), Expect = 1e-33
Identities = 50/195 (25%), Positives = 69/195 (35%), Gaps = 17/195 (8%)
Query: 586 KPSFKKRPLESETYAGEGGNVTIFCNPEAAPKPKFVWKKDGNII-GSGGRRKIFENGNLL 644
P A T C E+ P+P+ W ++ +I R I ENG LL
Sbjct: 7 APVITTPL--ETVDALVEEVATFMCAVESYPQPEISWTRNKILIKLFDTRYSIRENGQLL 64
Query: 645 -ISPVSRDDSGIYSCTATNVHGMDESKGRLIVLHGPSYYEQLPPKITIAAHRNLQLRCSA 703
I V D GIY CTA N G + + + P + I L C+
Sbjct: 65 TILSVEDSDDGIYCCTANNGVGGAVESCGALQVKMKPKITRPPINVKIIEGLKAVLPCTT 124
Query: 704 HTEELLDVAYIWTHNGVRIGNMDLNELETPNINI-DGGLLEITNASFADAGEYECVVKST 762
V W + E I + + G L I N DAG+Y CV K++
Sbjct: 125 MGNPKPSV--SWIKGDSAL-------RENSRIAVLESGSLRIHNVQKEDAGQYRCVAKNS 175
Query: 763 VGKISTKT---TVIV 774
+G +K V V
Sbjct: 176 LGTAYSKLVKLEVEV 190
Score = 94.8 bits (236), Expect = 2e-22
Identities = 42/201 (20%), Positives = 69/201 (34%), Gaps = 36/201 (17%)
Query: 184 DKIPRGPYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLI 243
+K+P+ P V + + T C YP P W + LI
Sbjct: 2 EKLPKAPVITTPLETVDALVEE-----VATFMCAVESYPQPEISWTRNK--------ILI 48
Query: 244 DPLSDKRFTL--SGGNLIINDPRQVEDRGSYHCKASNKFGSIISESVQLAFGFIGEFNLK 301
D R+++ +G L I D G Y C A+N G + L +K
Sbjct: 49 KL-FDTRYSIRENGQLLTILSVED-SDDGIYCCTANNGVGGAVESCGAL--------QVK 98
Query: 302 RAPEIGNQ------NWGKA--MFCDPPTNYPGVNYYWARDYFPNFVEEDKRVFVSYDGAL 353
P+I G + C P + W + + E+ R+ V G+L
Sbjct: 99 MKPKITRPPINVKIIEGLKAVLPC-TTMGNPKPSVSWIKGDSA--LRENSRIAVLESGSL 155
Query: 354 YFSALEQIDAGNYSCNVQSKV 374
+++ DAG Y C ++ +
Sbjct: 156 RIHNVQKEDAGQYRCVAKNSL 176
Score = 72.8 bits (179), Expect = 9e-15
Identities = 30/103 (29%), Positives = 39/103 (37%), Gaps = 19/103 (18%)
Query: 190 PYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPL-SD 248
P + P +V L C G P PS W K D L +
Sbjct: 101 PKITRPPINVKIIEGL-----KAVLPCTTMGNPKPSVSWIKGD-----------SALREN 144
Query: 249 KRFT-LSGGNLIINDPRQVEDRGSYHCKASNKFGSIISESVQL 290
R L G+L I++ Q ED G Y C A N G+ S+ V+L
Sbjct: 145 SRIAVLESGSLRIHNV-QKEDAGQYRCVAKNSLGTAYSKLVKL 186
>2v9r_A Roundabout homolog 1; proto-oncogene, differentiation,
phosphorylation, disease MU neuronal development,
immunoglobulin domain, chemotaxis; 2.00A {Homo sapiens}
PDB: 2v9q_A
Length = 212
Score = 174 bits (443), Expect = 7e-50
Identities = 56/202 (27%), Positives = 82/202 (40%), Gaps = 10/202 (4%)
Query: 486 QAEPNFTIPLTDKHMDNQADLTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQ 545
P +D + T C+A G P T W++ GE + ++ R +
Sbjct: 7 DFPPRIVEHPSDLIVSKGEPATLNCKAEGRPTPTIEWYKGGERVETDK-DDPRSHRMLLP 65
Query: 546 DNVLTIRYLNPER----DPAMYQCRAKNQLKTRYS-SAQLRVLTLKPSFKKRPLESETYA 600
L + R D +Y C A+N L S A L V L+ F++ P S+
Sbjct: 66 SGSLFFLRIVHGRKSRPDEGVYVCVARNYLGEAVSHDASLEVAILRDDFRQNP--SDVMV 123
Query: 601 GEGGNVTIFCNP-EAAPKPKFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCT 659
G + C P P+P WKKDG+ + R G L+I+ + D+G Y C
Sbjct: 124 AVGEPAVMECQPPRGHPEPTISWKKDGSPLDDKDERITIRGGKLMITYTRKSDAGKYVCV 183
Query: 660 ATNVHGMDESK-GRLIVLHGPS 680
TN+ G ES+ L VL PS
Sbjct: 184 GTNMVGERESEVAELTVLERPS 205
Score = 131 bits (332), Expect = 4e-35
Identities = 52/213 (24%), Positives = 79/213 (37%), Gaps = 21/213 (9%)
Query: 578 AQLRVLTLKPSFKKRPLESETYAGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGG---- 633
LR P + P S+ +G T+ C E P P W K G + +
Sbjct: 1 GSLRQEDFPPRIVEHP--SDLIVSKGEPATLNCKAEGRPTPTIEWYKGGERVETDKDDPR 58
Query: 634 -RRKIFENGNLLISPV-----SRDDSGIYSCTATNVHGMDESKG-RLIVLHGPSYYEQLP 686
R + +G+L + SR D G+Y C A N G S L V + Q P
Sbjct: 59 SHRMLLPSGSLFFLRIVHGRKSRPDEGVYVCVARNYLGEAVSHDASLEVAILRDDFRQNP 118
Query: 687 PKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEITN 746
+ +A + C + W +G + + + I I GG L IT
Sbjct: 119 SDVMVAVGEPAVMECQP-PRGHPEPTISWKKDGSPL------DDKDERITIRGGKLMITY 171
Query: 747 ASFADAGEYECVVKSTVGKISTKT-TVIVEGPP 778
+DAG+Y CV + VG+ ++ + V P
Sbjct: 172 TRKSDAGKYVCVGTNMVGERESEVAELTVLERP 204
Score = 118 bits (298), Expect = 2e-30
Identities = 51/212 (24%), Positives = 79/212 (37%), Gaps = 28/212 (13%)
Query: 402 NFPKTFPEAPK-----AGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYFENFNRIL--- 453
+FP E P G+ L C A G P P+ W + G + + +R+L
Sbjct: 7 DFPPRIVEHPSDLIVSKGEPATLNCKAEGRPTPTIEWYKGGERVETDKDDPRSHRMLLPS 66
Query: 454 --------TIPNVKVEDQGEYICRASNDR-SALESSVTISIQAE-PNFTIPLTDKHMDNQ 503
D+G Y+C A N A+ ++ + +F +D +
Sbjct: 67 GSLFFLRIVHGRKSRPDEGVYVCVARNYLGEAVSHDASLEVAILRDDFRQNPSDVMVAVG 126
Query: 504 ADLTWTCEA-FGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQDNVLTIRYLNPERDPAM 562
C+ G P+ T SW ++G L+ + +R I+ L I Y D
Sbjct: 127 EPAVMECQPPRGHPEPTISWKKDGSPLD------DKDERITIRGGKLMITYTRKS-DAGK 179
Query: 563 YQCRAKNQLKTRYSS-AQLRVLTLKPSFKKRP 593
Y C N + R S A+L VL +PSF K
Sbjct: 180 YVCVGTNMVGERESEVAELTVLE-RPSFVKAA 210
Score = 101 bits (252), Expect = 2e-24
Identities = 45/190 (23%), Positives = 70/190 (36%), Gaps = 16/190 (8%)
Query: 190 PYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDK 249
P ++ P+D++ + TL+C A G P P+ EW+K V D
Sbjct: 10 PRIVEHPSDLIVSKGE-----PATLNCKAEGRPTPTIEWYKGG----ERVETDKDDPRSH 60
Query: 250 RFTLSGGNLII----NDPRQVEDRGSYHCKASNKFGSIISESVQLAFGFIG-EFNLKRAP 304
R L G+L + + D G Y C A N G +S L + +F +
Sbjct: 61 RMLLPSGSLFFLRIVHGRKSRPDEGVYVCVARNYLGEAVSHDASLEVAILRDDFRQNPSD 120
Query: 305 EIGNQNWGKAMFCDPPTNYPGVNYYWARDYFPNFVEEDKRVFVSYDGALYFSALEQIDAG 364
+ M C PP +P W +D P +++ G L + + DAG
Sbjct: 121 VMVAVGEPAVMECQPPRGHPEPTISWKKDGSP--LDDKDERITIRGGKLMITYTRKSDAG 178
Query: 365 NYSCNVQSKV 374
Y C + V
Sbjct: 179 KYVCVGTNMV 188
Score = 71.8 bits (176), Expect = 3e-14
Identities = 28/102 (27%), Positives = 45/102 (44%), Gaps = 16/102 (15%)
Query: 190 PYFIKQPTDVVFDLSKRSILNDITLSCYA-GGYPNPSYEWFKEDYVQDRLVANLIDPLSD 248
F + P+DV+ + + + C G+P P+ W K+ + +D D
Sbjct: 112 DDFRQNPSDVMVAVGE-----PAVMECQPPRGHPEPTISWKKDG--------SPLDD-KD 157
Query: 249 KRFTLSGGNLIINDPRQVEDRGSYHCKASNKFGSIISESVQL 290
+R T+ GG L+I R+ D G Y C +N G SE +L
Sbjct: 158 ERITIRGGKLMITYTRK-SDAGKYVCVGTNMVGERESEVAEL 198
>2j8h_A Titin, connectin; cardiomyopathy, nuclear protein,
serine/threonine-protein KI LIMB-girdle muscular
dystrophy, phosphorylation; 1.99A {Homo sapiens} PDB:
2j8o_A 2ill_A
Length = 197
Score = 171 bits (436), Expect = 4e-49
Identities = 49/200 (24%), Positives = 82/200 (41%), Gaps = 22/200 (11%)
Query: 489 PNFTIPLTDKHMDNQADLTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQDN- 547
P+F L + ++ Q++ T C+ G P W+R G+ + + D +Y IQ+
Sbjct: 5 PHFKEELRNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEI------IADGLKYRIQEFK 58
Query: 548 ----VLTIRYLNPERDPAMYQCRAKNQLKTRYSSAQLRVL----TLKPSFKKRPLESETY 599
L I + + D +YQ RA NQ + +A L V P + +
Sbjct: 59 GGYHQLIIASVTDD-DATVYQVRATNQGGSVSGTASLEVEVPAKIHLPKTLEGM--GAVH 115
Query: 600 AGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGN----LLISPVSRDDSGI 655
A G V+I P P W+K ++I + G ++ + + + V R D+G
Sbjct: 116 ALRGEVVSIKIPFSGKPDPVITWQKGQDLIDNNGHYQVIVTRSFTSLVFPNGVERKDAGF 175
Query: 656 YSCTATNVHGMDESKGRLIV 675
Y A N G+D+ L V
Sbjct: 176 YVVCAKNRFGIDQKTVELDV 195
Score = 121 bits (305), Expect = 2e-31
Identities = 31/185 (16%), Positives = 63/185 (34%), Gaps = 24/185 (12%)
Query: 414 GDKVRLECVAFGYPVPSYNWTRRGSPLPRNA------YFENFNRILTIPNVKVEDQGEYI 467
L C G+P P W R+G + + F+ L I +V +D Y
Sbjct: 19 QSNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGGYHQLIIASVTDDDATVYQ 78
Query: 468 CRASNDRSALESSVTISIQAE-----PNFTIPLTDKHMDNQADLTWTCEAFGVPDVTYSW 522
RA+N ++ + ++ ++ P + H ++ G PD +W
Sbjct: 79 VRATNQGGSVSGTASLEVEVPAKIHLPKTLEGMGAVHALRGEVVSIKIPFSGKPDPVITW 138
Query: 523 FRNGELLNSETLPLEDQDRYFIQDN-----VLTIRYLNPERDPAMYQCRAKNQLKTRYSS 577
+ + +++ Y + ++ + + D Y AKN+ +
Sbjct: 139 QKGQD-------LIDNNGHYQVIVTRSFTSLVFPNGVERK-DAGFYVVCAKNRFGIDQKT 190
Query: 578 AQLRV 582
+L V
Sbjct: 191 VELDV 195
Score = 114 bits (288), Expect = 2e-29
Identities = 41/209 (19%), Positives = 60/209 (28%), Gaps = 37/209 (17%)
Query: 587 PSFKKRPLESETYAGEGGNVTIFCNPEAAPKPKFVWKKDGN-IIGSGGRRKIFENGN--- 642
P FK+ N T+ C PKP W + G II G + +I E
Sbjct: 5 PHFKEEL--RNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGGYH 62
Query: 643 -LLISPVSRDDSGIYSCTATNVHGMDESKGRLIVL-----HGPSYYEQLPPKITIAAHRN 696
L+I+ V+ DD+ +Y ATN G L V H P E +
Sbjct: 63 QLIIASVTDDDATVYQVRATNQGGSVSGTASLEVEVPAKIHLPKTLEG-MGAVHALRGEV 121
Query: 697 LQLRCSAHTEELLDVAY-----IWTHNGVRIGNMDLNELETPNINI--DGG---LLEITN 746
+ ++ W I + + L+
Sbjct: 122 VSIKIPF-------SGKPDPVITWQKGQDLID-------NNGHYQVIVTRSFTSLVFPNG 167
Query: 747 ASFADAGEYECVVKSTVGKISTKTTVIVE 775
DAG Y K+ G + V
Sbjct: 168 VERKDAGFYVVCAKNRFGIDQKTVELDVA 196
Score = 81.7 bits (202), Expect = 8e-18
Identities = 30/180 (16%), Positives = 56/180 (31%), Gaps = 30/180 (16%)
Query: 323 YPGVNYYWARDYFPNFVEEDKRVFVSYDG---ALYFSALEQIDAGNYSCNVQSK---VSD 376
+P W R + K + G L +++ DA Y ++ VS
Sbjct: 31 HPKPIVKWYRQGKEIIADGLKYRIQEFKGGYHQLIIASVTDDDATVYQVRATNQGGSVSG 90
Query: 377 TGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPEAPK-----AGDKVRLECVAFGYPVPSY 431
T L+V E G+ V ++ G P P
Sbjct: 91 TAS------LEV--------EVPAKIHLPKTLEGMGAVHALRGEVVSIKIPFSGKPDPVI 136
Query: 432 NWTRRGSPLPRNAYF-----ENFNRILTIPNVKVEDQGEYICRASNDRSALESSVTISIQ 486
W + + N ++ +F ++ V+ +D G Y+ A N + +V + +
Sbjct: 137 TWQKGQDLIDNNGHYQVIVTRSFTSLVFPNGVERKDAGFYVVCAKNRFGIDQKTVELDVA 196
Score = 70.9 bits (174), Expect = 4e-14
Identities = 33/197 (16%), Positives = 66/197 (33%), Gaps = 29/197 (14%)
Query: 190 PYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDK 249
P+F ++ ++ + TL C G+P P +W+++ I K
Sbjct: 5 PHFKEELRNLNVRYQS-----NATLVCKVTGHPKPIVKWYRQG--------KEIIADGLK 51
Query: 250 -RFTLSGGN---LIINDPRQVEDRGSYHCKASNKFGSIISE---SVQLAFGFIGEFNLKR 302
R G LII +D Y +A+N+ GS+ V++ L+
Sbjct: 52 YRIQEFKGGYHQLIIASV-TDDDATVYQVRATNQGGSVSGTASLEVEVPAKIHLPKTLEG 110
Query: 303 APEIGNQNWGKAMF-CDPPTNYPGVNYYWARDYFPNFVEEDKRVFVSYDG----ALYFSA 357
+ P + P W + ++ + V ++ +
Sbjct: 111 MGAVHALRGEVVSIKI-PFSGKPDPVITWQKGQDL--IDNNGHYQVIVTRSFTSLVFPNG 167
Query: 358 LEQIDAGNYSCNVQSKV 374
+E+ DAG Y +++
Sbjct: 168 VERKDAGFYVVCAKNRF 184
Score = 62.0 bits (151), Expect = 5e-11
Identities = 20/105 (19%), Positives = 37/105 (35%), Gaps = 20/105 (19%)
Query: 190 PYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDK 249
P ++ V + +++ G P+P W K +LID +
Sbjct: 105 PKTLEGMGAVHALRGE-----VVSIKIPFSGKPDPVITWQKGQ--------DLIDN-NGH 150
Query: 250 RFTLSGGN----LIINDPRQVEDRGSYHCKASNKFGSIISESVQL 290
+ + + N + +D G Y A N+FG +V+L
Sbjct: 151 YQVIVTRSFTSLVFPNGVER-KDAGFYVVCAKNRFGIDQK-TVEL 193
Score = 53.6 bits (129), Expect = 4e-08
Identities = 22/123 (17%), Positives = 34/123 (27%), Gaps = 25/123 (20%)
Query: 713 YIWTHNGVRIGNMDLNELETPNINIDGGLLEITNASFADAGEYECVVKSTVGKISTKTTV 772
W G I L L I + + DA Y+ + G +S ++
Sbjct: 36 VKWYRQGKEIIADGLKYRIQEFKG-GYHQLIIASVTDDDATVYQVRATNQGGSVSGTASL 94
Query: 773 IVEGPPGLPG-----GVQVVEVHKTS-------------ATIQWTDGATNGRPIT---HY 811
VE P + G+ V + I W I HY
Sbjct: 95 EVEVPAKIHLPKTLEGMGAVHALRGEVVSIKIPFSGKPDPVITWQ---KGQDLIDNNGHY 151
Query: 812 KII 814
++I
Sbjct: 152 QVI 154
>3l5h_A Interleukin-6 receptor subunit beta; IG-like, FNIII, cell membrane,
disulfide bond, glycoprotein, immunoglobulin domain,
membrane, phosphoprotein; HET: NAG NDG BMA FUC; 3.60A
{Homo sapiens}
Length = 589
Score = 180 bits (459), Expect = 2e-48
Identities = 60/402 (14%), Positives = 122/402 (30%), Gaps = 54/402 (13%)
Query: 603 GGNVTIFC-------NPEAAPKPKFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGI 655
N T C + VWK + I I + + +
Sbjct: 18 HSNFTAVCVLKEKCMDYFHVNANYIVWKTNHFTIPKEQYTIINRTASSVTFTDIASLNIQ 77
Query: 656 YSCTATNVHGMDESKGRLIVLHGPSYYEQLPP------KITIAAHRNLQLRCSAHTEELL 709
+C ++++ + ++ LPP + + ++ E L
Sbjct: 78 LTCNILTFGQLEQNVYGITII------SGLPPEKPKNLSCIVNEGKKMRCEWDGGRETHL 131
Query: 710 DVAYIWTHNGVRIGNMDLNELETPNIN--IDGGLLEITNASFADAGEYECVVKSTVGKIS 767
+ + D + +D + N E ++ +GK++
Sbjct: 132 ETNFTLKSEWATHKFADCKAKRDTPTSCTVDYSTVYFVN------IEVWVEAENALGKVT 185
Query: 768 TKTTVI---VEGPPGLPGGVQV--VEVHKTSATIQWTDGATNGRPITHYKIIARTNWNST 822
+ + P P + V E + + WT+ + I Y I RT ST
Sbjct: 186 SDHINFDPVYKVKPNPPHNLSVINSEELSSILKLTWTNPSIKSVIILKYNIQYRTKDAST 245
Query: 823 WFNVSEHVIGKEVDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPSPQYN--T 880
W + +T +++ L P++ Y F++ E G G S S + + T
Sbjct: 246 WSQIPPEDTASTRSSFT------VQD-LKPFTEYVFRIRCMKEDGKGYWSDWSEEASGIT 298
Query: 881 PADKPYQA----PSRIGGGGGKIGDLSISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSE 936
D+P +A + + W+ LP + N + Y++ + + Q+
Sbjct: 299 YEDRPSKAPSFWYKIDPSHTQGYRTVQLVWKTLPPFEANGKILDYEVTLT-RWKSHLQNY 357
Query: 937 TLKEYGNVGIAVVRIPSEFYYTEYEVKVQAINDVGPGPESEV 978
T+ V + Y + N VG + +
Sbjct: 358 TVNAT----KLTVNLT----NDRYLATLTVRNLVGKSDAAVL 391
Score = 90.1 bits (223), Expect = 1e-18
Identities = 36/230 (15%), Positives = 60/230 (26%), Gaps = 23/230 (10%)
Query: 754 EYECVVKST----VGKISTKTTVIVEGPPGLPGGVQVVEVHKTSATIQWTDGATNGR-PI 808
Y + + T + P ++WT + + I
Sbjct: 372 RYLATLTVRNLVGKSDAAVLTIPACDFQATHPVMDLKAFPKDNMLWVEWTTPRESVKKYI 431
Query: 809 THYKIIARTNWNSTWFNVSEHVIGKEVDRYTGRKEASIENVLVPWSTYEFKVIAGNELGY 868
+ +++ T + + L Y V G
Sbjct: 432 LEWCVLSDKAPCITDWQQE----------DGTVHRTYLRGNLAESKCYLITVTPVYADGP 481
Query: 869 GEPSSPSPQYNTPADKPYQAPSRIGGGGGKIGDLSISWEPLPREKQNAPNIYYKIFWRKK 928
G P S P + P+ GK + + W+ LP + QN Y IF+R
Sbjct: 482 GSPESIKAY--LKQAPPSKGPTVRTKKVGK-NEAVLEWDQLPVDVQNGFIRNYTIFYRTI 538
Query: 929 NDTEFQSETLKEYGNVGIAVVRIPSEFYYTEYEVKVQAINDVGPGPESEV 978
E + + S T Y V++ A D G E
Sbjct: 539 IGNETAVNV-----DSSHTEYTLSSLTSDTLYMVRMAAYTDEGGKDGPEF 583
Score = 80.8 bits (199), Expect = 7e-16
Identities = 60/513 (11%), Positives = 122/513 (23%), Gaps = 84/513 (16%)
Query: 505 DLTWTC-------EAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQDNVLTIRYLNPE 557
+ T C + F V W N + + I ++ + +
Sbjct: 20 NFTAVCVLKEKCMDYFHVNANYIVWKTNHF-------TIPKEQYTIINRTASSVTFTDIA 72
Query: 558 RDPAMYQCRAKNQLKTRYSSAQLRVLTLKPSFKKRPLESETYAGEGGNVTIFCNP--EAA 615
C + + + +++ P K + L EG + + E
Sbjct: 73 SLNIQLTCNILTFGQLEQNVYGITIISGLPPEKPKNLSCIVN--EGKKMRCEWDGGRETH 130
Query: 616 PKPKFVWKKDGNIIGSGGRRKIFENGNLLISPVSRD--DSGIYSCTATNVHGMDESKGRL 673
+ F K + + + S + A N G S
Sbjct: 131 LETNFTLKSEWATHKFADCKAKRDTPTSCTVDYSTVYFVNIEVWVEAENALGKVTSDHIN 190
Query: 674 IVLHGPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWT----HNGV--------- 720
++ P NL + S +L + WT + +
Sbjct: 191 FDP-----VYKVKP----NPPHNLSVINSEELSSILKLT--WTNPSIKSVIILKYNIQYR 239
Query: 721 RIGNMDLNELETPNINIDGGLLEITN-----------ASFADAGEYECVVKSTVGKISTK 769
+++ + + + + G+ S T
Sbjct: 240 TKDASTWSQIPPEDTASTRSSFTVQDLKPFTEYVFRIRCMKEDGKGYWSDWSEEASGITY 299
Query: 770 TTVIVEGPPGLPGGVQVVEVHKTSATIQWT--DGATNGRPITHYKIIARTNWNSTWFNVS 827
+ P + + W I Y++ T W S N +
Sbjct: 300 EDRPSKAPSFWYKIDPSHTQGYRTVQLVWKTLPPFEANGKILDYEV-TLTRWKSHLQNYT 358
Query: 828 EHVIGKEVDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPS-PQYNTPADKPY 886
A+ V + Y + N +G + + + P + A P
Sbjct: 359 V--------------NATKLTVNLTNDRYLATLTVRNLVGKSDAAVLTIPACDFQATHPV 404
Query: 887 QAPSRIGGGGGKIGDLSISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETLKEYGNVGI 946
L + W PRE + + + ++ +E G V
Sbjct: 405 MDLKAFPKDNM----LWVEWTT-PRESVKKYILEWCVLSD---KAPCITDWQQEDGTVHR 456
Query: 947 AVVRIPSEFY-YTEYEVKVQAINDVGPGPESEV 978
+ Y + V + GPG +
Sbjct: 457 TY--LRGNLAESKCYLITVTPVYADGPGSPESI 487
Score = 59.6 bits (144), Expect = 3e-09
Identities = 22/124 (17%), Positives = 43/124 (34%), Gaps = 21/124 (16%)
Query: 763 VGKISTKTTVIVEGPPGLPGGVQVVEVHKTSATIQWTDGATNGR--PITHYKIIART--- 817
G + + + PP V+ +V K A ++W + + I +Y I RT
Sbjct: 481 PGSPESIKAYLKQAPPSKGPTVRTKKVGKNEAVLEWDQLPVDVQNGFIRNYTIFYRTIIG 540
Query: 818 NWNSTWFNVSEHVIGKEVDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPSPQ 877
N + + S E ++ + L + Y ++ A + G + +
Sbjct: 541 NETAVNVDSSHT-------------EYTLSS-LTSDTLYMVRMAAYTDEGGKDGPEFTFT 586
Query: 878 YNTP 881
TP
Sbjct: 587 --TP 588
>1z7z_I Intercellular adhesion molecule-1; ICAM-1,kilifi,CD54,human
coxsackievirus A21, cryo-electron
microscopy,virus-receptor complex, icosahedral virus;
HET: NAG NDG; 8.00A {Homo sapiens} SCOP: b.1.1.3 b.1.1.3
b.1.1.4 b.1.1.4 b.1.1.4
Length = 450
Score = 175 bits (445), Expect = 1e-47
Identities = 81/490 (16%), Positives = 131/490 (26%), Gaps = 78/490 (15%)
Query: 212 ITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVEDRGS 271
+ ++C PL K L G N + + V++
Sbjct: 17 VLVTCSTSCDQPMLLGIET--------------PLPKKELLLPGNNRKVYELSNVQEDSQ 62
Query: 272 YHCKASNKFGSIISESVQLAFGFIGEFNLKRAPEIGNQNWGKAMF---------CDPPTN 322
C ++ + L + PE + C
Sbjct: 63 PMCYSNCP-DGQSTAKTFL--------TVYWTPERVELAPLPSWQPVGKNLTLRCQVEGG 113
Query: 323 YPGVN--YYWARDYFPNFVEEDKRVFVSYDGALYFSALEQIDAGNYSCNVQSKVSDTGRN 380
P N R ++ + V + N+SC + D
Sbjct: 114 APRANLTVVLLRGEKE--LKREPAVGEPAEVTTTVLVRRDHHGANFSCRTEL---DLRPQ 168
Query: 381 GPFFPLKVFPHSNFQQLKFPNNFPK-TFPEAPKAGDKVRLECVAFG-YPVPSYNWTRR-- 436
G Q P P+ P + + + C G +PV
Sbjct: 169 GLELFENTSAPYQLQTFVLPATPPQLVSPRVLEVDTQGTVVCSLDGLFPVSEAQVHLALG 228
Query: 437 -GSPLPRNAYFENFNRILTIPNVKVEDQGEY--ICRASNDRSALESSVTISIQAEPNFTI 493
P Y + +V ED+G C + E+ T++I + P +
Sbjct: 229 DQRLNPTVTYGNDSFSAKASVSVTAEDEGTQRLTCAVILGNQSQETLQTVTIYSFPAPNV 288
Query: 494 PLTDKHMDNQADLTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQDNVLTIRY 553
LT + ++T CEA VT + L L L+
Sbjct: 289 ILTKPEVSEGTEVTVKCEAHPRAKVTLNGVPAQPLGPRAQLLLKAT-------------- 334
Query: 554 LNPERDPAMYQCRAKNQL----KTRYSSAQLRVLTLKPSFKKRPLESETYAGEGGNVTIF 609
PE + + C A ++ + + +LRVL P +R E T
Sbjct: 335 --PEDNGRSFSCSATLEVAGQLIHKNQTRELRVLY-GPRLDERDCPGNWTWPENSQQTPM 391
Query: 610 CNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTATNVHGMDES 669
C P P+ KDG G V+RD G Y C A + G
Sbjct: 392 CQAWGNPLPELKCLKDGTFPLPIGE----------SVTVTRDLEGTYLCRARSTQGEVTR 441
Query: 670 KGRLIVLHGP 679
+ + V P
Sbjct: 442 EVTVNV-LSP 450
Score = 148 bits (373), Expect = 3e-38
Identities = 68/458 (14%), Positives = 107/458 (23%), Gaps = 68/458 (14%)
Query: 342 DKRVFVSYDGALYFSALEQIDAGNYSCNVQSKVSDTGRNGPFFPLKVFPHSNFQQLKFPN 401
K + + + + + C + + P
Sbjct: 39 KKELLLPGNNRKVYELSNVQEDSQPMCYSNCPDGQSTAK-----------TFLTVYWTPE 87
Query: 402 NFPKT-FPEAPKAGDKVRLEC-VAFGYPVPS--YNWTRRGSPLPRNAYF-ENFNRILTIP 456
P G + L C V G P + R L R E T+
Sbjct: 88 RVELAPLPSWQPVGKNLTLRCQVEGGAPRANLTVVLLRGEKELKREPAVGEPAEVTTTVL 147
Query: 457 NVKVEDQGEYICRASNDRSALESSVTISIQA-------EPNFTIPLTDKHMDNQADLTWT 509
+ + CR D + + A T P + D T
Sbjct: 148 VRRDHHGANFSCRTELDLRPQGLELFENTSAPYQLQTFVLPATPPQLVSPRVLEVDTQGT 207
Query: 510 --CEAFG---VPDVTYSWFRNGELLNSETLPLEDQDRYFIQDNVLTIRYLNPERDPAMYQ 564
C G V + + LN D D +
Sbjct: 208 VVCSLDGLFPVSEAQVHLALGDQRLNPTVTYGNDSFS-------AKASVSVTAEDEGTQR 260
Query: 565 CRAKNQLKTRYSSAQLRVLTLKPSFKKRPLESETYAGEGGNVTIFCNPEAAPKPKFVWKK 624
L + V T+ + ++ EG VT+ C K
Sbjct: 261 LTCAVILGNQSQETLQTV-TIYSFPAPNVILTKPEVSEGTEVTVKCEAHPRAKVTLNGVP 319
Query: 625 DGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTATNVHG----MDESKGRLIVLHGPS 680
+ LL+ D+ +SC+AT L VL+GP
Sbjct: 320 AQ---------PLGPRAQLLLKATPEDNGRSFSCSATLEVAGQLIHKNQTRELRVLYGPR 370
Query: 681 YYE-QLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDG 739
E P T + C A +G
Sbjct: 371 LDERDCPGNWTWPENSQQTPMCQAWGN--PLPELKCLKDG----------------TFPL 412
Query: 740 GLLEITNASFADAGEYECVVKSTVGKISTKTTVIVEGP 777
+ E + G Y C +ST G+++ + TV V P
Sbjct: 413 PIGESVTVTRDLEGTYLCRARSTQGEVTREVTVNVLSP 450
Score = 132 bits (333), Expect = 4e-33
Identities = 48/411 (11%), Positives = 106/411 (25%), Gaps = 54/411 (13%)
Query: 412 KAGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYFENFNRILTIPNVKVEDQGEYICRAS 471
G V + C +PLP+ N V++ + +C ++
Sbjct: 12 PRGGSVLVTCSTSCDQPMLLGIE---TPLPKKELLLPGNNRKVYELSNVQEDSQPMCYSN 68
Query: 472 NDRSALESSVTISIQAEPNF-TIPLTDKHMDNQADLTWTCEAFGV---PDVTYSWFRNGE 527
+ +++ P + +LT C+ G ++T R +
Sbjct: 69 CPDGQSTAKTFLTVYWTPERVELAPLPSWQPVGKNLTLRCQVEGGAPRANLTVVLLRGEK 128
Query: 528 LLNSETLPLEDQDRYFIQDNVLTIRYLNPERDPAMYQCRAKNQLKTRY------SSAQLR 581
L E E + T+ + + A + CR + L+ + +SA +
Sbjct: 129 ELKREPAVGEP------AEVTTTVL-VRRDHHGANFSCRTELDLRPQGLELFENTSAPYQ 181
Query: 582 VLTLKPSFKKRPLESETYAGEGGNVTIFCNPEA---APKPKFVWKKDGNIIGSGGRRKIF 638
+ T L S T+ C+ + + + +
Sbjct: 182 LQTFVLPATPPQLVSPRVLEVDTQGTVVCSLDGLFPVSEAQVHLALGDQRLNPTVTYGND 241
Query: 639 ENGNLLISPVSRDDSGIY--SCTATNVHGMDESKGRLIVLHGPSYYEQLPPKITIAAHRN 696
V+ +D G +C + E+ + + P+ L ++
Sbjct: 242 SFSAKASVSVTAEDEGTQRLTCAVILGNQSQETLQTVTIYSFPAPNVILTK-PEVSEGTE 300
Query: 697 LQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEITNASFADAGEYE 756
+ ++C AH V L + + +
Sbjct: 301 VTVKCEAHPRA--KVTLNGVPAQP---------------LGPRAQLLLKATPEDNGRSFS 343
Query: 757 CVVKSTVG----KISTKTTVIVEGPPGLPGGVQVVEVHKTSATIQWTDGAT 803
C V + + V P ++ W + +
Sbjct: 344 CSATLEVAGQLIHKNQTRELRVLYGP-------RLDERDCPGNWTWPENSQ 387
Score = 68.0 bits (165), Expect = 7e-12
Identities = 38/309 (12%), Positives = 69/309 (22%), Gaps = 26/309 (8%)
Query: 596 SETYAGEGGNVTIFCNPEAAPKPKFVWKK---DGNIIGSGGRRKIFENGNLLISPVSRDD 652
S+ GG+V + C+ + ++ G RK++E + +
Sbjct: 7 SKVILPRGGSVLVTCSTSCDQPMLLGIETPLPKKELLLPGNNRKVYE-------LSNVQE 59
Query: 653 SGIYSCTATNVHGMDESKGRLIVLHGPSYYEQLPPKITIAAHRNLQLRCSAHTEE-LLDV 711
C + G +K L V P E P +NL LRC ++
Sbjct: 60 DSQPMCYSNCPDGQSTAKTFLTVYWTPERVELAPLPSWQPVGKNLTLRCQVEGGAPRANL 119
Query: 712 AYIWTHNGVRIGNMDLNELETPNINIDGGLLEITNASFADAGEYECVVKSTVGKISTKTT 771
+ + E + + C + + +
Sbjct: 120 TVVLLRGEKELKR------EPAVGEPAEVTTTVLVRRDHHGANFSCRTELDLRPQGLELF 173
Query: 772 VIVEGPPGLPGGVQVVEVHKTSATIQWTDGATNGRPITHYKIIARTNWNS--TWFNVSEH 829
P +Q + T + T + S
Sbjct: 174 ENTSAPY----QLQTFVLPATPPQLVSPRVLEVDTQGTVVCSLDGLFPVSEAQVHLALGD 229
Query: 830 VIGKEVDRYTGRK---EASIENVLVPWSTYEFKVIAGNELGYGEPSSPSPQYNTPADKPY 886
Y +AS+ T E Y+ PA
Sbjct: 230 QRLNPTVTYGNDSFSAKASVSVTAEDEGTQRLTCAVILGNQSQETLQTVTIYSFPAPNVI 289
Query: 887 QAPSRIGGG 895
+ G
Sbjct: 290 LTKPEVSEG 298
Score = 46.4 bits (109), Expect = 4e-05
Identities = 16/83 (19%), Positives = 27/83 (32%), Gaps = 25/83 (30%)
Query: 210 NDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQV--E 267
+ T C A G P P + K+ L I + V +
Sbjct: 386 SQQTPMCQAWGNPLPELKCLKDG----------------------TFPLPIGESVTVTRD 423
Query: 268 DRGSYHCKASNKFGSIISESVQL 290
G+Y C+A + G ++ V +
Sbjct: 424 LEGTYLCRARSTQGE-VTREVTV 445
Score = 40.2 bits (93), Expect = 0.003
Identities = 20/170 (11%), Positives = 43/170 (25%), Gaps = 37/170 (21%)
Query: 210 NDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVEDR 269
++T+ C A + + L ++
Sbjct: 299 TEVTVKCEAHPRAKVTLNGVPAQ-----------PLGPRAQLLLK--------ATPEDNG 339
Query: 270 GSYHCKASNKFGSII---SESVQLAFGFIGEFNLKRAPEIGNQNWGKA--MFCDPPTNYP 324
S+ C A+ + + +++ +L + + + P C N P
Sbjct: 340 RSFSCSATLEVAGQLIHKNQTRELRVLYGPRLDERDCPGNWTWPENSQQTPMCQAWGN-P 398
Query: 325 GVNYYWARDYFPNFVEEDKRVFVSYDGALYFSALEQIDAGNYSCNVQSKV 374
+D + + V V+ D G Y C +S
Sbjct: 399 LPELKCLKDGTFP-LPIGESVTVTRD-----------LEGTYLCRARSTQ 436
Score = 37.9 bits (87), Expect = 0.014
Identities = 21/301 (6%), Positives = 67/301 (22%), Gaps = 39/301 (12%)
Query: 686 PPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEIT 745
P K+ + ++ + CS ++ + + + +
Sbjct: 6 PSKVILPRGGSVLVTCSTSCDQPMLLGIETPLPKKEL------------LLPGNNRKVYE 53
Query: 746 NASFADAGEYECVVKSTVGKISTKTTVIVEGPPGLPGGVQVVEVHKTSATIQWTDGAT-- 803
++ + + C G+ + KT + V P + VE+ + T
Sbjct: 54 LSNVQEDSQPMCYSNCPDGQSTAKTFLTVYWTP------ERVELAPLPSWQPVGKNLTLR 107
Query: 804 ----NGRPITHYKIIARTNWNSTWFNVSEHVIGKEVDRYTGRKEASIENVLVP-WSTY-- 856
G P + + + + + ++ + +
Sbjct: 108 CQVEGGAPRANLTV--------VLLRGEKELKREPAVGEPAEVTTTVLVRRDHHGANFSC 159
Query: 857 EFKVIAGNELGYGEPSSPSPQYNTPADKPYQAPSRIGGGGGKIGDLSISWEPLPREKQNA 916
++ + ++ +P P P + ++ +
Sbjct: 160 RTELDLRPQGLELFENTSAPYQLQTFVLPATPPQLVSPRVLEVDT---QGTVVCSLDGLF 216
Query: 917 PNIYYKIFWRKKNDTEFQSETLKEYGNVGIAVVRIPSEFYYTEYEVKVQAINDVGPGPES 976
P ++ D + + + I
Sbjct: 217 PVSEAQVHL-ALGDQRLNPTVTYGNDSFSAKASVSVTAEDEGTQRLTCAVILGNQSQETL 275
Query: 977 E 977
+
Sbjct: 276 Q 276
>2v5t_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; phosphorylation,
immunoglobulin domain, membrane, glycoprote adhesion,
transmembrane; HET: NAG; 2.00A {Homo sapiens}
Length = 189
Score = 161 bits (410), Expect = 1e-45
Identities = 39/193 (20%), Positives = 70/193 (36%), Gaps = 9/193 (4%)
Query: 487 AEPNFTIPLTDKHMDNQADLTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFI-Q 545
+ F ++ + D C P SW + E + +R+ +
Sbjct: 1 SMLTFREVVSPQEFKQGEDAEVVCRVSSSPAPAVSWLYHNE-----EVTTISDNRFAMLA 55
Query: 546 DNVLTIRYLNPERDPAMYQCRAKNQ-LKTRYSSAQLRVLTLKPSFKKRPLESETYAGEGG 604
+N L I +N D +Y+C + + + ++ + P+ A G
Sbjct: 56 NNNLQILNINKS-DEGIYRCEGRVEARGEIDFRDIIVIVNVPPAISMPQKSFNATAERGE 114
Query: 605 NVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKI-FENGNLLISPVSRDDSGIYSCTATNV 663
+T C +P+P W ++G +I + + N L + + D G Y C ATN
Sbjct: 115 EMTFSCRASGSPEPAISWFRNGKLIEENEKYILKGSNTELTVRNIINSDGGPYVCRATNK 174
Query: 664 HGMDESKGRLIVL 676
G DE + L V
Sbjct: 175 AGEDEKQAFLQVF 187
Score = 129 bits (326), Expect = 2e-34
Identities = 44/192 (22%), Positives = 77/192 (40%), Gaps = 22/192 (11%)
Query: 406 TFPEAPK-----AGDKVRLECVAFGYPVPSYNWTRRGSPL---PRNAYFENFNRILTIPN 457
TF E G+ + C P P+ +W + N + N L I N
Sbjct: 4 TFREVVSPQEFKQGEDAEVVCRVSSSPAPAVSWLYHNEEVTTISDNRFAMLANNNLQILN 63
Query: 458 VKVEDQGEYICRASND--RSALESSVTISIQAEPNFTIP--LTDKHMDNQADLTWTCEAF 513
+ D+G Y C + + + + P ++P + + ++T++C A
Sbjct: 64 INKSDEGIYRCEGRVEARGEIDFRDIIVIVNVPPAISMPQKSFNATAERGEEMTFSCRAS 123
Query: 514 GVPDVTYSWFRNGELLNSETLPLEDQDRYFIQDN--VLTIRYLNPERDPAMYQCRAKNQL 571
G P+ SWFRNG+ +E+ ++Y ++ + LT+R + D Y CRA N+
Sbjct: 124 GSPEPAISWFRNGK-------LIEENEKYILKGSNTELTVRNIINS-DGGPYVCRATNKA 175
Query: 572 KTRYSSAQLRVL 583
A L+V
Sbjct: 176 GEDEKQAFLQVF 187
Score = 123 bits (311), Expect = 2e-32
Identities = 37/200 (18%), Positives = 65/200 (32%), Gaps = 28/200 (14%)
Query: 587 PSFKKRPLESETYAGEGGNVTIFCNPEAAPKPKFVWKKDGNII--GSGGRRKIFENGNLL 644
+F++ S +G + + C ++P P W + S R + N NL
Sbjct: 3 LTFREVV--SPQEFKQGEDAEVVCRVSSSPAPAVSWLYHNEEVTTISDNRFAMLANNNLQ 60
Query: 645 ISPVSRDDSGIYSCTATN-VHGMDESKGRLIVLHGP--SYYEQLPPKITIAAHRNLQLRC 701
I +++ D GIY C G + + +++++ P Q T + C
Sbjct: 61 ILNINKSDEGIYRCEGRVEARGEIDFRDIIVIVNVPPAISMPQKSFNATAERGEEMTFSC 120
Query: 702 SAH-----TEELLDVAYIWTHNGVRIGNMDLNELETPNINI--DGGLLEITNASFADAGE 754
A W NG I E + L + N +D G
Sbjct: 121 RASGSPEPA-------ISWFRNGKLI-------EENEKYILKGSNTELTVRNIINSDGGP 166
Query: 755 YECVVKSTVGKISTKTTVIV 774
Y C + G+ + + V
Sbjct: 167 YVCRATNKAGEDEKQAFLQV 186
Score = 92.5 bits (230), Expect = 1e-21
Identities = 34/168 (20%), Positives = 57/168 (33%), Gaps = 9/168 (5%)
Query: 323 YPGVNYYWARDYFPNFVEEDKRVFVSYDGALYFSALEQIDAGNYSCNVQSKVSDTGRNGP 382
P W D R + + L + + D G Y C + +
Sbjct: 29 SPAPAVSWLYHNEEVTTISDNRFAMLANNNLQILNINKSDEGIYRCEGRVEARGEIDFRD 88
Query: 383 FFPLKVFPHSNFQQLKFPNNFPKTFPEAPKAGDKVRLECVAFGYPVPSYNWTRRGSPLPR 442
+ V + N T G+++ C A G P P+ +W R G +
Sbjct: 89 II-VIVNVPPAISMPQKSFN--ATAER----GEEMTFSCRASGSPEPAISWFRNGKLIEE 141
Query: 443 NAYF--ENFNRILTIPNVKVEDQGEYICRASNDRSALESSVTISIQAE 488
N + + N LT+ N+ D G Y+CRA+N E + + +
Sbjct: 142 NEKYILKGSNTELTVRNIINSDGGPYVCRATNKAGEDEKQAFLQVFVQ 189
Score = 85.2 bits (211), Expect = 5e-19
Identities = 33/189 (17%), Positives = 57/189 (30%), Gaps = 20/189 (10%)
Query: 190 PYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDK 249
F + + F D + C P P+ W + + +SD
Sbjct: 3 LTFREVVSPQEFKQG-----EDAEVVCRVSSSPAPAVSWLYHN--------EEVTTISDN 49
Query: 250 RFT-LSGGNLIINDPRQVEDRGSYHCKASNKFGSIISESVQLAFGFIG-EFNLKRAPEIG 307
RF L+ NL I + D G Y C+ + I + + ++ +
Sbjct: 50 RFAMLANNNLQILNI-NKSDEGIYRCEGRVEARGEIDFRDIIVIVNVPPAISMPQKSFNA 108
Query: 308 NQNWGKA--MFCDPPTNYPGVNYYWARDYFPNFVEEDKRVFVSYDGALYFSALEQIDAGN 365
G+ C + P W R+ E +K + + L + D G
Sbjct: 109 TAERGEEMTFSCR-ASGSPEPAISWFRNGKL-IEENEKYILKGSNTELTVRNIINSDGGP 166
Query: 366 YSCNVQSKV 374
Y C +K
Sbjct: 167 YVCRATNKA 175
Score = 63.3 bits (154), Expect = 2e-11
Identities = 28/136 (20%), Positives = 46/136 (33%), Gaps = 23/136 (16%)
Query: 155 FICEASIQKLHYLLNDDRTYQYGMDIENPDKIPRGPYFIKQPTDVVFDLSKRSILNDITL 214
+ CE + R DI +P ++ + + + ++T
Sbjct: 72 YRCEGR--------VEARGEIDFRDIIVIVNVPPAISMPQKSFNATAERGE-----EMTF 118
Query: 215 SCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVEDRGSYHC 274
SC A G P P+ WF+ LI+ S L + + D G Y C
Sbjct: 119 SCRASGSPEPAISWFRNG--------KLIEENEKYILKGSNTELTVRNI-INSDGGPYVC 169
Query: 275 KASNKFGSIISESVQL 290
+A+NK G + L
Sbjct: 170 RATNKAGE-DEKQAFL 184
Score = 46.7 bits (111), Expect = 8e-06
Identities = 15/103 (14%), Positives = 29/103 (28%), Gaps = 18/103 (17%)
Query: 683 EQLPPKITIAAHRNLQLRCSAH-----TEELLDVAYIWTHNGVRIGNMDLNELETPNINI 737
++ + ++ C W ++ + + N +
Sbjct: 6 REVVSPQEFKQGEDAEVVCRVSSSPAPA-------VSWLYHNEEVTTISDNRFAM----L 54
Query: 738 DGGLLEITNASFADAGEYECVVKSTVGKI--STKTTVIVEGPP 778
L+I N + +D G Y C + VIV PP
Sbjct: 55 ANNNLQILNINKSDEGIYRCEGRVEARGEIDFRDIIVIVNVPP 97
>2vr9_A Roundabout 1, ROBO; immunoglobulin-like domain, AXON guidance, cell
adhesion, immunoglobulin domain; 3.2A {Drosophila
melanogaster} PDB: 2vra_A*
Length = 217
Score = 161 bits (410), Expect = 2e-45
Identities = 60/206 (29%), Positives = 90/206 (43%), Gaps = 19/206 (9%)
Query: 489 PNFTIPLTDKHMDNQADLTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQDNV 548
P TD + T C+ G P+ T WF++GE +++ + R +D
Sbjct: 10 PRIIEHPTDLVVKKNEPATLNCKVEGKPEPTIEWFKDGEPVSTNE---KKSHRVQFKDGA 66
Query: 549 LTIRYLNP---ERDPAMYQCRAKNQLKTRYS-SAQLRVLTLKPSFKKRPLESETYAGEGG 604
L E+D Y C AKN++ S A L++ L+ F+ P +T +G
Sbjct: 67 LFFYRTMQGKKEQDGGEYWCVAKNRVGQAVSRHASLQIAVLRDDFRVEP--KDTRVAKGE 124
Query: 605 NVTIFCN-PEAAPKPKFVWKKDGNII--------GSGGRRKIFENGNLLISPVSRDDSGI 655
+ C P+ P+P +W KDG + G+ R +I + GNLLIS V D G
Sbjct: 125 TALLECGPPKGIPEPTLIWIKDGVPLDDLKAMSFGASSRVRIVDGGNLLISNVEPIDEGN 184
Query: 656 YSCTATNVHGMDESK-GRLIVLHGPS 680
Y C A N+ G ES +LIV +
Sbjct: 185 YKCIAQNLVGTRESSYAKLIVQVKAA 210
Score = 122 bits (308), Expect = 1e-31
Identities = 51/218 (23%), Positives = 79/218 (36%), Gaps = 20/218 (9%)
Query: 578 AQLRVLTLKPSFKKRPLESETYAGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGG---R 634
A L P + P ++ + T+ C E P+P W KDG + +
Sbjct: 1 APLAGQYQSPRIIEHP--TDLVVKKNEPATLNCKVEGKPEPTIEWFKDGEPVSTNEKKSH 58
Query: 635 RKIFENGNLL----ISPVSRDDSGIYSCTATNVHGMDES-KGRLIVLHGPSYYEQLPPKI 689
R F++G L + D G Y C A N G S L + + P
Sbjct: 59 RVQFKDGALFFYRTMQGKKEQDGGEYWCVAKNRVGQAVSRHASLQIAVLRDDFRVEPKDT 118
Query: 690 TIAAHRNLQLRC---SAHTEELLDVAYIWTHNGVRI-GNMDLNELETPNINI-DGGLLEI 744
+A L C E IW +GV + ++ + + I DGG L I
Sbjct: 119 RVAKGETALLECGPPKGIPE----PTLIWIKDGVPLDDLKAMSFGASSRVRIVDGGNLLI 174
Query: 745 TNASFADAGEYECVVKSTVGKI-STKTTVIVEGPPGLP 781
+N D G Y+C+ ++ VG S+ +IV+
Sbjct: 175 SNVEPIDEGNYKCIAQNLVGTRESSYAKLIVQVKAAAH 212
Score = 118 bits (296), Expect = 4e-30
Identities = 48/194 (24%), Positives = 76/194 (39%), Gaps = 16/194 (8%)
Query: 414 GDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYFENFNRI--------LTIPNVKVEDQGE 465
+ L C G P P+ W + G P+ N + + T+ K +D GE
Sbjct: 24 NEPATLNCKVEGKPEPTIEWFKDGEPVSTNEKKSHRVQFKDGALFFYRTMQGKKEQDGGE 83
Query: 466 YICRASNDR-SALESSVTISIQA-EPNFTIPLTDKHMDNQADLTWTC-EAFGVPDVTYSW 522
Y C A N A+ ++ I +F + D + C G+P+ T W
Sbjct: 84 YWCVAKNRVGQAVSRHASLQIAVLRDDFRVEPKDTRVAKGETALLECGPPKGIPEPTLIW 143
Query: 523 FRNGELLN-SETLPLEDQDRYFIQDN-VLTIRYLNPERDPAMYQCRAKNQLKTRYSS-AQ 579
++G L+ + + R I D L I + P D Y+C A+N + TR SS A+
Sbjct: 144 IKDGVPLDDLKAMSFGASSRVRIVDGGNLLISNVEPI-DEGNYKCIAQNLVGTRESSYAK 202
Query: 580 LRVLTLKPSFKKRP 593
L V +K +
Sbjct: 203 LIVQ-VKAAAHHHH 215
Score = 100 bits (251), Expect = 4e-24
Identities = 52/199 (26%), Positives = 78/199 (39%), Gaps = 23/199 (11%)
Query: 187 PRGPYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPL 246
+ P I+ PTD+V ++ TL+C G P P+ EWFK+ V+ +
Sbjct: 7 YQSPRIIEHPTDLVVKKNE-----PATLNCKVEGKPEPTIEWFKDG----EPVST--NEK 55
Query: 247 SDKRFTLSGGNLIIN---DPRQVEDRGSYHCKASNKFGSIISESVQLAFGFIGEFNLKRA 303
R G L ++ +D G Y C A N+ G +S L + + + +
Sbjct: 56 KSHRVQFKDGALFFYRTMQGKKEQDGGEYWCVAKNRVGQAVSRHASLQIAVLRD-DFRVE 114
Query: 304 PEIGNQNWGKA--MFCDPPTNYPGVNYYWARDYFP------NFVEEDKRVFVSYDGALYF 355
P+ G+ + C PP P W +D P RV + G L
Sbjct: 115 PKDTRVAKGETALLECGPPKGIPEPTLIWIKDGVPLDDLKAMSFGASSRVRIVDGGNLLI 174
Query: 356 SALEQIDAGNYSCNVQSKV 374
S +E ID GNY C Q+ V
Sbjct: 175 SNVEPIDEGNYKCIAQNLV 193
Score = 71.8 bits (176), Expect = 4e-14
Identities = 28/102 (27%), Positives = 40/102 (39%), Gaps = 8/102 (7%)
Query: 190 PYFIKQPTDVVFDLSKRSILNDITLSCY-AGGYPNPSYEWFKEDYVQDRLVANLIDPLSD 248
F +P D + L C G P P+ W K+ D L A S
Sbjct: 109 DDFRVEPKDTRVAKGE-----TALLECGPPKGIPEPTLIWIKDGVPLDDLKAMSFGA-SS 162
Query: 249 KRFTLSGGNLIINDPRQVEDRGSYHCKASNKFGSIISESVQL 290
+ + GGNL+I++ D G+Y C A N G+ S +L
Sbjct: 163 RVRIVDGGNLLISNVEP-IDEGNYKCIAQNLVGTRESSYAKL 203
>2y23_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin-
like; 2.50A {Homo sapiens}
Length = 312
Score = 164 bits (417), Expect = 3e-45
Identities = 52/328 (15%), Positives = 96/328 (29%), Gaps = 59/328 (17%)
Query: 489 PNFTIPLTDKHMDNQADLTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQDN- 547
P + + D L + C+ P +SW ++ ED R ++
Sbjct: 4 PFTKEVVVNVDDDGVISLNFECDK-MTPKSEFSWSKDYV-------STEDSPRLEVESKG 55
Query: 548 ---VLTIRYLNPERDPAMYQCRAKNQLKTRYSSAQL-----------RVLTLKPSFKKRP 593
+T + L + D +Y C + S K
Sbjct: 56 NKTKMTFKDLGMD-DLGIYSCDVTDTDGIASSYLIDEEELKRLLALSHEHKFPTVPVKSE 114
Query: 594 LESETYAGEGGNVTIFCNPEAA-PKPKFVWKKDGNIIGSGGRRKIFENGN-----LLISP 647
L E E G V + E K + + I G + K+ + N + +
Sbjct: 115 LAVE--ILEKGQVRFWMQAEKLSGNAKVNYIFNEKEIFEGPKYKMHIDRNTGIIEMFMEK 172
Query: 648 VSRDDSGIYSCTATNVHGMDESKGRLIVLHGPSYYEQL-----------------PPKIT 690
+ +D G Y+ + + S L+ ++
Sbjct: 173 LQDEDEGTYTFQLQDGKATNHSTVVLVGDVFKKLQKEAEFQRQEWIRKQGPHFVEYLSWE 232
Query: 691 IAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGL--LEITNAS 748
+ N+ L+C + +W + I + G+ L IT S
Sbjct: 233 VTGECNVLLKCKV-ANIKKETHIVWYKDEREI-------SVDEKHDFKDGICTLLITEFS 284
Query: 749 FADAGEYECVVKSTVGKISTKTTVIVEG 776
DAG YE ++K GK ++ ++ E
Sbjct: 285 KKDAGIYEVILKDDRGKDKSRLKLVDEA 312
Score = 124 bits (312), Expect = 3e-31
Identities = 43/296 (14%), Positives = 92/296 (31%), Gaps = 52/296 (17%)
Query: 324 PGVNYYWARDYFPNFVEEDKRVFVSYDGA---LYFSALEQIDAGNYSCNVQSKVSDTGRN 380
P + W++DY E+ R+ V G + F L D G YSC V+DT
Sbjct: 30 PKSEFSWSKDYVS--TEDSPRLEVESKGNKTKMTFKDLGMDDLGIYSC----DVTDTDGI 83
Query: 381 GPFFPLKVFPHSNFQQLKFPNNFPKTFPEAPKA------GDKVRLECVAFGYPVPSYNWT 434
+ + L + FP ++ A G N+
Sbjct: 84 ASSYLIDEEELKRLLALSHEHKFPTVPVKSELAVEILEKGQVRFWMQAEKLSGNAKVNYI 143
Query: 435 RRGSPLPRNAYF------ENFNRILTIPNVKVEDQGEYICRASNDRSALESSVTISIQA- 487
+ + + + ++ ED+G Y + + ++ S+V +
Sbjct: 144 FNEKEIFEGPKYKMHIDRNTGIIEMFMEKLQDEDEGTYTFQLQDGKATNHSTVVLVGDVF 203
Query: 488 ------------------EPNFTIPLTDKHMDNQADLTWTCEAFGV-PDVTYSWFRNGEL 528
P+F L+ + ++ C+ + + W+++
Sbjct: 204 KKLQKEAEFQRQEWIRKQGPHFVEYLSWEVTGEC-NVLLKCKVANIKKETHIVWYKDER- 261
Query: 529 LNSETLPLEDQDRYFIQDNV--LTIRYLNPERDPAMYQCRAKNQLKTRYSSAQLRV 582
+ +++ +D + L I + + D +Y+ K+ S +L
Sbjct: 262 ------EISVDEKHDFKDGICTLLITEFSKK-DAGIYEVILKDDRGKDKSRLKLVD 310
Score = 123 bits (311), Expect = 3e-31
Identities = 42/326 (12%), Positives = 88/326 (26%), Gaps = 45/326 (13%)
Query: 190 PYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDK 249
P+ + +V D + C P + W K+ +
Sbjct: 4 PFTKEVVVNVDDDGVIS-----LNFECDKMT-PKSEFSWSKDY--------VSTEDSPRL 49
Query: 250 RFTLSGGN--LIINDPRQVEDRGSYHCKASNKFGSIISESV---QLAFGFIGEFNLKRAP 304
G + D ++D G Y C ++ G S + +L K
Sbjct: 50 EVESKGNKTKMTFKDL-GMDDLGIYSCDVTDTDGIASSYLIDEEELKRLLALSHEHKFPT 108
Query: 305 EIGNQNWGK--------AMFCDPPTNYPGVNYYWARDYFPNFVEEDKRVFVSYDGA---- 352
+ + + + E + + D
Sbjct: 109 VPVKSELAVEILEKGQVRFWMQAEKLSGNAKVNYIFNEKE--IFEGPKYKMHIDRNTGII 166
Query: 353 -LYFSALEQIDAGNYSC---NVQSKVSDTGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFP 408
++ L+ D G Y+ + ++ T K+ + FQ+ ++ F
Sbjct: 167 EMFMEKLQDEDEGTYTFQLQDGKATNHSTVVLVGDVFKKLQKEAEFQRQEWIRKQGPHFV 226
Query: 409 EAPK----AGDKVRLECVAFGYPVPSY-NWTRRGSPLPRNAYF--ENFNRILTIPNVKVE 461
E V L+C ++ W + + + ++ L I +
Sbjct: 227 EYLSWEVTGECNVLLKCKVANIKKETHIVWYKDEREISVDEKHDFKDGICTLLITEFSKK 286
Query: 462 DQGEYICRASNDRSALESSVTISIQA 487
D G Y +DR +S + + +A
Sbjct: 287 DAGIYEVILKDDRGKDKSRLKLVDEA 312
Score = 106 bits (265), Expect = 4e-25
Identities = 33/212 (15%), Positives = 64/212 (30%), Gaps = 21/212 (9%)
Query: 585 LKPSFKKRPLESETYAGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGN-- 642
+ P K+ ++ C + PK +F W KD R ++ GN
Sbjct: 2 IDPFTKEVV--VNVDDDGVISLNFEC-DKMTPKSEFSWSKDYVSTEDSPRLEVESKGNKT 58
Query: 643 -LLISPVSRDDSGIYSCTATNVHGMDESKGRLIV-LHGPSYYEQLPPKITIAAHRNLQLR 700
+ + DD GIYSC T+ G+ S L T+ L +
Sbjct: 59 KMTFKDLGMDDLGIYSCDVTDTDGIASSYLIDEEELKRLLALSHEHKFPTVPVKSELAVE 118
Query: 701 CSAHTEELLDV---------AYIWTHNGVRIGNMDLNELETPNINIDGGL--LEITNASF 749
+ + + N I ++ +I+ + G+ + +
Sbjct: 119 ILEKGQVRFWMQAEKLSGNAKVNYIFNEKEIFEGPKYKM---HIDRNTGIIEMFMEKLQD 175
Query: 750 ADAGEYECVVKSTVGKISTKTTVIVEGPPGLP 781
D G Y ++ + ++ + L
Sbjct: 176 EDEGTYTFQLQDGKATNHSTVVLVGDVFKKLQ 207
>4dkd_C Macrophage colony-stimulating factor 1 receptor; dimeric four-helix
bundle cytokine, receptor tyrosine kinase glycosylation;
HET: NAG BMA; 3.00A {Homo sapiens}
Length = 292
Score = 161 bits (408), Expect = 3e-44
Identities = 60/298 (20%), Positives = 95/298 (31%), Gaps = 35/298 (11%)
Query: 412 KAGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYFENFNRILTIPNVKVEDQGEYICRAS 471
K G V L CV G S W SP Y + + IL+ N ++ G Y C
Sbjct: 17 KPGATVTLRCVGNG----SVEWDGPPSP-HWTLYSDGSSSILSTNNATFQNTGTYRCTEP 71
Query: 472 NDRSALESSVTISIQAEPN-FTIPLTDKHMDNQADLTWTCEAFG-VPDVTYSWFRNGELL 529
D +++ + ++ + + + + D C V + S R
Sbjct: 72 GDPLGGSAAIHLYVKDPARPWNVLAQEVVVFEDQDALLPCLLTDPVLEAGVSLVRVRG-- 129
Query: 530 NSETLPLEDQDRYFIQDN-VLTIRYLNPERDPAMYQCRAKNQLKTRYS-SAQLRVLTLK- 586
PL Y TI YQC A + S S +L+V +
Sbjct: 130 ----RPLMRHTNYSFSPWHGFTIHRAKFI-QSQDYQCSALMGGRKVMSISIRLKVQKVIP 184
Query: 587 --PSFKKRPLESETYAGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGN-- 642
P+ P +E G I C+ + V+ + N + ++ F N
Sbjct: 185 GPPALTLVP--AELVRIRGEAAQIVCSASSVDVNFDVFLQHNNTKLAIPQQSDFHNNRYQ 242
Query: 643 ----LLISPVSRDDSGIYSCTATNVHGMDESKGRLIVLHGPSYYEQLPPKITIAAHRN 696
L + V +G YSC A+NV G + V E + H +
Sbjct: 243 KVLTLNLDQVDFQHAGNYSCVASNVQGKHSTSMFFRV------VE--SAGNSHHHHHH 292
Score = 143 bits (363), Expect = 3e-38
Identities = 47/305 (15%), Positives = 82/305 (26%), Gaps = 33/305 (10%)
Query: 486 QAEPNFTIPLTDKHMDNQADLTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFI- 544
+ P + + + A +T C G + W P Y
Sbjct: 2 GSIPVIEPSVPELVVKPGATVTLRCVGNG----SVEWDGP---------PSPHWTLYSDG 48
Query: 545 QDNVLTIRYLNPERDPAMYQCRAKNQLKTRYSSAQLRVLTLKPSFKKRPLESETYAGEGG 604
++L+ + + Y+C ++ L V + E E
Sbjct: 49 SSSILSTNNATFQ-NTGTYRCTEPGDPLGGSAAIHLYVKDPARPWNVLA--QEVVVFEDQ 105
Query: 605 NVTIFCNPEA-APKPKFVWKK-DGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTATN 662
+ + C + + G + I S Y C+A
Sbjct: 106 DALLPCLLTDPVLEAGVSLVRVRGRPLMRHTNYSFSPWHGFTIHRAKFIQSQDYQCSALM 165
Query: 663 -VHGMDESKGRLIVLHGPSYYEQLPPKITIAAHR-------NLQLRCSAHTEELLDVAYI 714
+ RL V PP +T+ Q+ CSA + ++ +
Sbjct: 166 GGRKVMSISIRLKVQKVIPG----PPALTLVPAELVRIRGEAAQIVCSASSVDV-NFDVF 220
Query: 715 WTHNGVRIGNMDLNELETPNINIDGGLLEITNASFADAGEYECVVKSTVGKISTKTTVIV 774
HN ++ ++ L + F AG Y CV + GK ST V
Sbjct: 221 LQHNNTKLAIPQQSDFHNNRYQKVL-TLNLDQVDFQHAGNYSCVASNVQGKHSTSMFFRV 279
Query: 775 EGPPG 779
G
Sbjct: 280 VESAG 284
Score = 109 bits (274), Expect = 2e-26
Identities = 46/321 (14%), Positives = 87/321 (27%), Gaps = 44/321 (13%)
Query: 190 PYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDK 249
P ++V +TL C G S EW L ++
Sbjct: 5 PVIEPSVPELVVKPGA-----TVTLRCVGNG----SVEWDGPPSPHWTLYSDG------- 48
Query: 250 RFTLSGGNLIINDPRQVEDRGSYHCKASNKFGSIISESVQLAFGFIGE----FNLKRAPE 305
S L N+ ++ G+Y C + ++ L ++ + +N+
Sbjct: 49 ----SSSILSTNNA-TFQNTGTYRCTEPGDPLGGSA-AIHL---YVKDPARPWNVLAQEV 99
Query: 306 IGNQNWGKAMFCDPPTNYPGVNYYWARDYFPNFVEEDKRVFVSYDGALYFSALEQIDAGN 365
+ ++ + C R + S + I + +
Sbjct: 100 VVFEDQDALLPCLLTDPVLEAGVSLVRVR-GRPLMRHTNYSFSPWHGFTIHRAKFIQSQD 158
Query: 366 YSCNVQSKVSDTGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPEAPKAGDKVRLECVAFG 425
Y C+ LKV P G+ ++ C A
Sbjct: 159 YQCSALMGGRKVMSIS--IRLKVQKVIPG----PPALTLVPAELVRIRGEAAQIVCSASS 212
Query: 426 YPVPSYNWTRRGS---PLPRNAYFEN----FNRILTIPNVKVEDQGEYICRASNDRSALE 478
V + + + +P+ + F N L + V + G Y C ASN +
Sbjct: 213 VDVNFDVFLQHNNTKLAIPQQSDFHNNRYQKVLTLNLDQVDFQHAGNYSCVASNVQGKHS 272
Query: 479 SSVTISIQAEPNFTIPLTDKH 499
+S+ + E H
Sbjct: 273 TSMFFRVV-ESAGNSHHHHHH 292
Score = 88.5 bits (219), Expect = 3e-19
Identities = 33/197 (16%), Positives = 59/197 (29%), Gaps = 15/197 (7%)
Query: 586 KPSFKKRPLESETYAGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGNLLI 645
P + P E G VT+ C + + W DG + L
Sbjct: 4 IPVIE--PSVPELVVKPGATVTLRCVGNGSVE----W--DGPPSPHWTLYSDGSSSILST 55
Query: 646 SPVSRDDSGIYSCTATNVHGMDESKGRLIVLHGPSYYEQLPPKITIAAHRNLQLRCSAHT 705
+ + ++G Y CT + L V + L ++ + ++ L C T
Sbjct: 56 NNATFQNTGTYRCTEPGDPLGGSAAIHLYVKDPARPWNVLAQEVVVFEDQDALLPCLL-T 114
Query: 706 EELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEITNASFADAGEYECVVKSTVG- 764
+ +L+ R N +P I A F + +Y+C
Sbjct: 115 DPVLEAGVSLVRVRGRPLMRHTNYSFSPW-----HGFTIHRAKFIQSQDYQCSALMGGRK 169
Query: 765 KISTKTTVIVEGPPGLP 781
+S + V+ P
Sbjct: 170 VMSISIRLKVQKVIPGP 186
Score = 50.0 bits (119), Expect = 1e-06
Identities = 18/107 (16%), Positives = 32/107 (29%), Gaps = 10/107 (9%)
Query: 184 DKIPRGPYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLI 243
IP P P ++V + + C A + + + + +A
Sbjct: 181 KVIPGPPALTLVPAELVRIRGEA-----AQIVCSASSVDVNFDVFLQHN---NTKLAIPQ 232
Query: 244 DPLSDKRFTLSGGNLIINDPRQVEDRGSYHCKASNKFGSIISESVQL 290
L ++ + G+Y C ASN G S S+
Sbjct: 233 QSDFHNNRYQKVLTLNLDQV-DFQHAGNYSCVASNVQGK-HSTSMFF 277
>3ejj_X Macrophage colony-stimulating factor 1 receptor; growth
factor-receptor complex, receptor tyrosine kinase, CY
4-helix bundle, ATP-binding; HET: NAG; 2.40A {Mus
musculus}
Length = 289
Score = 160 bits (407), Expect = 3e-44
Identities = 56/277 (20%), Positives = 90/277 (32%), Gaps = 25/277 (9%)
Query: 412 KAGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYFENFNRILTIPNVKVEDQGEYICRAS 471
+ G+ V L CV+ G S W SP E+ LT N ++ G Y C
Sbjct: 17 EPGETVTLRCVSNG----SVEWDGPISPYWT-LDPESPGSTLTTRNATFKNTGTYRCTEL 71
Query: 472 NDRSALESSVTISIQAEPN-FTIPLTDKHMDNQADLTWTCEA-FGVPDVTYSWFRNGELL 529
D A +++ + ++ + + + + + + C + S R G
Sbjct: 72 EDPMAGSTTIHLYVKDPAHSWNLLAQEVTVVEGQEAVLPCLITDPALKDSVSLMREG--- 128
Query: 530 NSETLPLEDQDRYFIQDNVLTIRYLNPERDPAMYQCRAKNQLKTRYS-SAQLRVLTLK-- 586
L +F IR D Y C+ + S L+V +
Sbjct: 129 --GRQVLRKTVYFFSPWRGFIIRKAKVL-DSNTYVCKTMVNGRESTSTGIWLKVNRVHPE 185
Query: 587 -PSFKKRPLESETYAGEGGNVTIFCNPEAAPKPKFVWKKDGNII------GSGGRRKIFE 639
P K P S+ G I C+ A V K G+ +
Sbjct: 186 PPQIKLEP--SKLVRIRGEAAQIVCSATNAEVGFNVILKRGDTKLEIPLNSDFQDNYYKK 243
Query: 640 NGNLLISPVSRDDSGIYSCTATNVHGMDESKGRLIVL 676
L ++ V D+GIYSC A+N G + V+
Sbjct: 244 VRALSLNAVDFQDAGIYSCVASNDVGTRTATMNFQVV 280
Score = 142 bits (360), Expect = 7e-38
Identities = 53/304 (17%), Positives = 85/304 (27%), Gaps = 33/304 (10%)
Query: 487 AEPNFTIPLTDKHMDNQA--DLTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFI 544
A+P I + + + +T C + G + W S L+ +
Sbjct: 1 ADPAPVIEPSGPELVVEPGETVTLRCVSNG----SVEWDGPI----SPYWTLDPESPG-- 50
Query: 545 QDNVLTIRYLNPERDPAMYQCRAKNQLKTRYSSAQLRVLTLKPSFKKRPLESETYAGEGG 604
+ LT R + + Y+C ++ L V S+ E EG
Sbjct: 51 --STLTTRNATFK-NTGTYRCTELEDPMAGSTTIHLYVKDPAHSWNLLA--QEVTVVEGQ 105
Query: 605 NVTIFCNPEAA-PKPKFVWKKDG-NIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTATN 662
+ C K ++G + +I DS Y C
Sbjct: 106 EAVLPCLITDPALKDSVSLMREGGRQVLRKTVYFFSPWRGFIIRKAKVLDSNTYVCKTMV 165
Query: 663 -VHGMDESKGRLIVLHGPSYYEQLPPKITIAAHR-------NLQLRCSAHTEELLDVAYI 714
+ L V PP+I + + Q+ CSA E+ +
Sbjct: 166 NGRESTSTGIWLKVNRVHPE----PPQIKLEPSKLVRIRGEAAQIVCSATNAEVGFN--V 219
Query: 715 WTHNGVRIGNMDLNELETPNINIDGGLLEITNASFADAGEYECVVKSTVGKISTKTTVIV 774
G + LN N L + F DAG Y CV + VG + V
Sbjct: 220 ILKRGDTKLEIPLNSDFQDNYYKKVRALSLNAVDFQDAGIYSCVASNDVGTRTATMNFQV 279
Query: 775 EGPP 778
Sbjct: 280 VESH 283
Score = 116 bits (292), Expect = 8e-29
Identities = 48/311 (15%), Positives = 86/311 (27%), Gaps = 43/311 (13%)
Query: 190 PYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDK 249
P ++V + + +TL C + G S EW I P
Sbjct: 5 PVIEPSGPELVVEPGE-----TVTLRCVSNG----SVEWDGP-----------ISPYWTL 44
Query: 250 RFTLSGGNLIINDPRQVEDRGSYHCKASNKFGSIISESVQLAFGFIGEFNLKRAPEIGNQ 309
G L + ++ G+Y C + + ++ L ++ +
Sbjct: 45 DPESPGSTLTTRNA-TFKNTGTYRCTELEDPMAGST-TIHL---YVKDPAHSWNLLAQEV 99
Query: 310 --NWGKAMF--CDPPTNYPGVNYYWARDYFPNFVEEDKRVFVSYDGALYFSALEQIDAGN 365
G+ C + R+ V F S + +D+
Sbjct: 100 TVVEGQEAVLPCLITDPALKDSVSLMREGGR-QVLRKTVYFFSPWRGFIIRKAKVLDSNT 158
Query: 366 YSCNVQSKVSDTGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPEAPKAGDKVRLECVAFG 425
Y C V+ LKV + P + G+ ++ C A
Sbjct: 159 YVCKTM--VNGRESTSTGIWLKVNR----VHPEPPQIKLEPSKLVRIRGEAAQIVCSATN 212
Query: 426 YPVPSYNWTRRGSPLPR-------NAYFENFNRILTIPNVKVEDQGEYICRASNDRSALE 478
V +RG + R L++ V +D G Y C ASND
Sbjct: 213 AEVGFNVILKRGDTKLEIPLNSDFQDNYYKKVRALSLNAVDFQDAGIYSCVASNDVGTRT 272
Query: 479 SSVTISIQAEP 489
+++ +
Sbjct: 273 ATMNFQVVESH 283
Score = 101 bits (252), Expect = 1e-23
Identities = 33/197 (16%), Positives = 54/197 (27%), Gaps = 13/197 (6%)
Query: 586 KPSFKKRPLESETYAGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGNLLI 645
P+ P E G VT+ C + + W + + L
Sbjct: 2 DPAPVIEPSGPELVVEPGETVTLRCVSNGSVE----WDGPISPYWTLDPES--PGSTLTT 55
Query: 646 SPVSRDDSGIYSCTATNVHGMDESKGRLIVLHGPSYYEQLPPKITIAAHRNLQLRCSAHT 705
+ ++G Y CT + L V + L ++T+ + L C T
Sbjct: 56 RNATFKNTGTYRCTELEDPMAGSTTIHLYVKDPAHSWNLLAQEVTVVEGQEAVLPCLI-T 114
Query: 706 EELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEITNASFADAGEYECVVK-STVG 764
+ L + G R +P I A D+ Y C +
Sbjct: 115 DPALKDSVSLMREGGRQVLRKTVYFFSPW-----RGFIIRKAKVLDSNTYVCKTMVNGRE 169
Query: 765 KISTKTTVIVEGPPGLP 781
ST + V P
Sbjct: 170 STSTGIWLKVNRVHPEP 186
>3o4o_C Interleukin-1 receptor type 2; cytokine-receptor complex,
beta-trefoil, IG-like fold, immun; HET: NAG; 3.30A {Homo
sapiens}
Length = 339
Score = 160 bits (405), Expect = 2e-43
Identities = 55/293 (18%), Positives = 99/293 (33%), Gaps = 32/293 (10%)
Query: 507 TWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQDNVLTIRYLNPERDPAMYQCR 566
+ A P + +W +N T+P E++ R + QD L + E D Y C
Sbjct: 44 PYWLWASVSPRINLTWHKNDSAR---TVPGEEETRMWAQDGALWLLPALQE-DSGTYVCT 99
Query: 567 AKNQLKTRYSSAQLRVLTLKPSFKKRPLESETYAGEGGNVTIFCN-----PEAAPKPKFV 621
+N S +LRV +F + + + C K
Sbjct: 100 TRNASYCDKMSIELRVFENTDAFLPFISYPQILT-LSTSGVLVCPDLSEFTRDKTDVKIQ 158
Query: 622 WKKDGNIIGSGGRRKIFE--NGNLLISPVSRDDSGIYSCTATNVHGMDESKGRLIV-LHG 678
W KD ++ + + +LL+ V+ +D+G Y C T H + + L
Sbjct: 159 WYKDSLLLDKDNEKFLSVRGTTHLLVHDVALEDAGYYRCVLTFAHEGQQYNITRSIELRI 218
Query: 679 PSYYEQLPPKI-------TIAAHRNLQLRCSAHTEELLDVAYI--WTHNGVRIGNMD--- 726
E+ P I + + L + C + + WT N I +
Sbjct: 219 KKKKEETIPVIISPLKTISASLGSRLTIPCKVFLGTGTPLTTMLWWTANDTHIESAYPGG 278
Query: 727 -LNELETPNINIDGGL-----LEITNASFADAG-EYECVVKSTVGKISTKTTV 772
+ E + + L + D +++CVV +T+ + +TTV
Sbjct: 279 RVTEGPRQEYSENNENYIEVPLIFDPVTREDLHMDFKCVVHNTLSFQTLRTTV 331
Score = 142 bits (360), Expect = 2e-37
Identities = 50/309 (16%), Positives = 93/309 (30%), Gaps = 57/309 (18%)
Query: 413 AGDKVRLEC-------VAFGYPVPSYNWTRRGSPLP----RNAYFENFNRILTIPNVKVE 461
G+ V L C A P + W + S + L + E
Sbjct: 32 EGEPVALRCPQVPYWLWASVSPRINLTWHKNDSARTVPGEEETRMWAQDGALWLLPALQE 91
Query: 462 DQGEYICRASNDRSALESSVTISIQAEPNFTIP--LTDKHMDNQADLTWTCEAF-----G 514
D G Y+C N + S+ + + + +P + + C
Sbjct: 92 DSGTYVCTTRNASYCDKMSIELRVFENTDAFLPFISYPQILTLSTSGVLVCPDLSEFTRD 151
Query: 515 VPDVTYSWFRNGELLNSETLPLEDQDRYFIQDN--VLTIRYLNPERDPAMYQCRAKNQLK 572
DV W+++ LL+ +D +++ L + + E D Y+C +
Sbjct: 152 KTDVKIQWYKDSLLLD------KDNEKFLSVRGTTHLLVHDVALE-DAGYYRCVLTFAHE 204
Query: 573 TRYSSA----QLRVL----TLKPSFKKRPLESETYAGEGGNVTIFCNPEAA---PKPKFV 621
+ + +LR+ P A G +TI C P +
Sbjct: 205 GQQYNITRSIELRIKKKKEETIPVIISPL--KTISASLGSRLTIPCKVFLGTGTPLTTML 262
Query: 622 WKKDGN----------IIGSGGRRKIFENG------NLLISPVSRDDSGI-YSCTATNVH 664
W + + G R++ EN L+ PV+R+D + + C N
Sbjct: 263 WWTANDTHIESAYPGGRVTEGPRQEYSENNENYIEVPLIFDPVTREDLHMDFKCVVHNTL 322
Query: 665 GMDESKGRL 673
+ +
Sbjct: 323 SFQTLRTTV 331
Score = 111 bits (278), Expect = 1e-26
Identities = 51/292 (17%), Positives = 89/292 (30%), Gaps = 42/292 (14%)
Query: 323 YPGVNYYWARDYFPNFVEEDKRVFVSY-DGALYFSALEQIDAGNYSCNVQSKVSDTGRNG 381
P +N W ++ V ++ + DGAL+ Q D+G Y C ++ +
Sbjct: 52 SPRINLTWHKNDSARTVPGEEETRMWAQDGALWLLPALQEDSGTYVCTTRNASYCDKMS- 110
Query: 382 PFFPLKVF-PHSNFQQLKFPNNFPKTFPEAPKAGDKVRLECVAF-----GYPVPSYNWTR 435
L+VF F ++P+ L C W +
Sbjct: 111 --IELRVFENTDAFLP-------FISYPQILTLSTSGVLVCPDLSEFTRDKTDVKIQWYK 161
Query: 436 RGSPLP---RNAYFENFNRILTIPNVKVEDQGEYICRASNDRSALESSVTISIQAE---- 488
L L + +V +ED G Y C + + ++T SI+
Sbjct: 162 DSLLLDKDNEKFLSVRGTTHLLVHDVALEDAGYYRCVLTFAHEGQQYNITRSIELRIKKK 221
Query: 489 -----PNFTIPLTDKHMDNQADLTWTCEAF---GVPDVTYSWFRNGELLNSETLP----L 536
P PL + LT C+ F G P T W+ + P
Sbjct: 222 KEETIPVIISPLKTISASLGSRLTIPCKVFLGTGTPLTTMLWWTANDTHIESAYPGGRVT 281
Query: 537 EDQDRYFIQDN------VLTIRYLNPERDPAMYQCRAKNQLKTRYSSAQLRV 582
E + + ++N L + E ++C N L + ++
Sbjct: 282 EGPRQEYSENNENYIEVPLIFDPVTREDLHMDFKCVVHNTLSFQTLRTTVKE 333
Score = 110 bits (275), Expect = 3e-26
Identities = 47/335 (14%), Positives = 85/335 (25%), Gaps = 51/335 (15%)
Query: 190 PYFIKQPTDVVFDLSKRSILN--DITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLS 247
+ + + L + +A P + W K D + +
Sbjct: 19 RFRGRHYKREFRLEGEPVALRCPQVPYWLWASVSPRINLTWHKNDSART------VPGEE 72
Query: 248 DKRFTLSGGNLIINDPRQVEDRGSYHCKASNKFGSIISESVQLAFGFIGEFNLKRAPEIG 307
+ R G L + ED G+Y C N S++L + L
Sbjct: 73 ETRMWAQDGALWLLPA-LQEDSGTYVCTTRNASYCD-KMSIELRVFENTDAFLPFISYPQ 130
Query: 308 NQNWGK------AMFCDPPTNYPGVNYYWARDYFPNFVEEDKRVFVSYDGALYFSALEQI 361
+ + V W +D + +K + V L +
Sbjct: 131 ILTLSTSGVLVCPDLSEFTRDKTDVKIQWYKDSLLLDKDNEKFLSVRGTTHLLVHDVALE 190
Query: 362 DAGNYSCNVQSKVSDTGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPEAPK-----AGDK 416
DAG Y C + N + + K K G +
Sbjct: 191 DAGYYRCVLTFAHEGQQYN-------ITRSIELRIKKKKEETIPVIISPLKTISASLGSR 243
Query: 417 VRLECVAF---GYPVPSYNWTRRGSPLPRNAYFEN-----------------FNRILTIP 456
+ + C F G P+ + W +AY L
Sbjct: 244 LTIPCKVFLGTGTPLTTMLWWTANDTHIESAYPGGRVTEGPRQEYSENNENYIEVPLIFD 303
Query: 457 NVKVEDQG-EYICRASNDRSALESSVTISIQAEPN 490
V ED ++ C N S ++ +++ +
Sbjct: 304 PVTREDLHMDFKCVVHNTLS--FQTLRTTVKEHHH 336
Score = 109 bits (273), Expect = 5e-26
Identities = 48/312 (15%), Positives = 89/312 (28%), Gaps = 36/312 (11%)
Query: 587 PSFKKRPLESETYAGEGGNVTIFCNP-------EAAPKPKFVWKKDGNII---GSGGRRK 636
+ + EG V + C +P+ W K+ + G R
Sbjct: 19 RFRGRHY--KREFRLEGEPVALRCPQVPYWLWASVSPRINLTWHKNDSARTVPGEEETRM 76
Query: 637 IFENGNLLISPVSRDDSGIYSCTATNVHGMDESKGRLIVLHGPS-YYEQLPPKITIAAHR 695
++G L + P ++DSG Y CT N D+ L V + + +
Sbjct: 77 WAQDGALWLLPALQEDSGTYVCTTRNASYCDKMSIELRVFENTDAFLPFISYPQILTLST 136
Query: 696 NLQLRCSAHTEELLDV---AYIWTHNGVRIGNMDLNELETPNINIDGGLLEITNASFADA 752
+ L C +E D W + + + + L L + + + DA
Sbjct: 137 SGVLVCPDLSEFTRDKTDVKIQWYKDSLLLDKDNEKFLSVRG----TTHLLVHDVALEDA 192
Query: 753 GEYECVVKSTVGKISTKTTVIVE---------GPPGLPGGVQVVEVHK-TSATIQWTDGA 802
G Y CV+ T +E P + ++ + + TI
Sbjct: 193 GYYRCVLTFAHEGQQYNITRSIELRIKKKKEETIPVIISPLKTISASLGSRLTIPCKVFL 252
Query: 803 TNGRP---ITHYKI---IARTNWNSTWFNVSEHVIGKEVDRYTGRKEASIENVLVPWSTY 856
G P + + + + E + + V
Sbjct: 253 GTGTPLTTMLWWTANDTHIESAYPGGRVTEGPRQEYSENNENYIEVPLIFDPVTREDLHM 312
Query: 857 EFKVIAGNELGY 868
+FK + N L +
Sbjct: 313 DFKCVVHNTLSF 324
>3lcy_A Titin; A-BAND, IG tandem domains, ATP-binding, calmodulin-BI
cardiomyopathy, disease mutation, disulfide bond,
immunoglo domain, isopeptide bond; 2.50A {Homo sapiens}
Length = 197
Score = 154 bits (391), Expect = 4e-43
Identities = 37/201 (18%), Positives = 71/201 (35%), Gaps = 17/201 (8%)
Query: 484 SIQAE-PNFTIPLTDKHMDNQADLTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRY 542
++ E P + D +C+ G P W+R G+ L +Y
Sbjct: 2 AMSGEAPGIRKEMKDVTTKLGEAAQLSCQIVGRPLPDIKWYRFGK-------ELIQSRKY 54
Query: 543 FIQDN----VLTIRYLNPERDPAMYQCRAKNQLKTRYSSAQLRVLTLKPSFKKRPLESET 598
+ + LT+ E D +Y C A N++ +S++L + PL+ +
Sbjct: 55 KMSSDGRTHTLTVMTEEQE-DEGVYTCIATNEVGEVETSSKLLLQATPQFHPGYPLKEKY 113
Query: 599 YAGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGN---LLISPVSR-DDSG 654
Y G + + P P W ++ + I + L++ V R +G
Sbjct: 114 YGAVGSTLRLHVMYIGRPVPAMTWFHGQKLLQNSENITIENTEHYTHLVMKNVQRKTHAG 173
Query: 655 IYSCTATNVHGMDESKGRLIV 675
Y +NV G ++ + +
Sbjct: 174 KYKVQLSNVFGTVDAILDVEI 194
Score = 130 bits (329), Expect = 9e-35
Identities = 38/184 (20%), Positives = 71/184 (38%), Gaps = 22/184 (11%)
Query: 412 KAGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYF----ENFNRILTIPNVKVEDQGEYI 467
K G+ +L C G P+P W R G L ++ + + LT+ + ED+G Y
Sbjct: 20 KLGEAAQLSCQIVGRPLPDIKWYRFGKELIQSRKYKMSSDGRTHTLTVMTEEQEDEGVYT 79
Query: 468 CRASNDRSALESSVTISIQAEPNFTIPLTDKHMDNQA-----DLTWTCEAFGVPDVTYSW 522
C A+N+ +E+S + +QA P F K + L G P +W
Sbjct: 80 CIATNEVGEVETSSKLLLQATPQFHPGYPLK--EKYYGAVGSTLRLHVMYIGRPVPAMTW 137
Query: 523 FRNGELLNSETLPLEDQDRYFIQDN----VLTIRYLNPERDPAMYQCRAKNQLKTRYSSA 578
F + L++ + I++ L ++ + + Y+ + N T +
Sbjct: 138 FHGQK-------LLQNSENITIENTEHYTHLVMKNVQRKTHAGKYKVQLSNVFGTVDAIL 190
Query: 579 QLRV 582
+ +
Sbjct: 191 DVEI 194
Score = 127 bits (321), Expect = 1e-33
Identities = 39/205 (19%), Positives = 70/205 (34%), Gaps = 31/205 (15%)
Query: 586 KPSFKKRPLESETYAGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGN--- 642
P +K + G + C P P W + G + + K+ +G
Sbjct: 7 APGIRKEM--KDVTTKLGEAAQLSCQIVGRPLPDIKWYRFGKELIQSRKYKMSSDGRTHT 64
Query: 643 LLISPVSRDDSGIYSCTATNVHGMDESKGRLIVLHGPSYYE--QLPPKITIAAHRNLQLR 700
L + ++D G+Y+C ATN G E+ +L++ P ++ L K A L+L
Sbjct: 65 LTVMTEEQEDEGVYTCIATNEVGEVETSSKLLLQATPQFHPGYPLKEKYYGAVGSTLRLH 124
Query: 701 CSAHTEELLDVAY-----IWTHNGVRIGNMDLNELETPNINI----DGGLLEITNASF-A 750
+ W H + + NI I L + N
Sbjct: 125 VMY-------IGRPVPAMTWFHGQKLL-------QNSENITIENTEHYTHLVMKNVQRKT 170
Query: 751 DAGEYECVVKSTVGKISTKTTVIVE 775
AG+Y+ + + G + V ++
Sbjct: 171 HAGKYKVQLSNVFGTVDAILDVEIQ 195
Score = 70.1 bits (172), Expect = 9e-14
Identities = 32/197 (16%), Positives = 59/197 (29%), Gaps = 33/197 (16%)
Query: 190 PYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDK 249
P K+ DV L + LSC G P P +W++ +
Sbjct: 8 PGIRKEMKDVTTKLGE-----AAQLSCQIVGRPLPDIKWYRFG--------KELIQSRKY 54
Query: 250 RFTLSGGN--LIINDPRQVEDRGSYHCKASNKFGSIISE---SVQLAFGFIGEFNLKR-- 302
+ + G L + + ED G Y C A+N+ G + + +Q F + LK
Sbjct: 55 KMSSDGRTHTLTVMTE-EQEDEGVYTCIATNEVGEVETSSKLLLQATPQFHPGYPLKEKY 113
Query: 303 APEIGNQNWGKAMF-CDPPTNYPGVNYYWARDYFPNFVEEDKRVFVSYDGALY----FSA 357
+G+ P W ++ + + + +
Sbjct: 114 YGAVGS----TLRLHV-MYIGRPVPAMTWFHGQKL--LQNSENITIENTEHYTHLVMKNV 166
Query: 358 LEQIDAGNYSCNVQSKV 374
+ AG Y + +
Sbjct: 167 QRKTHAGKYKVQLSNVF 183
Score = 58.9 bits (143), Expect = 6e-10
Identities = 14/79 (17%), Positives = 29/79 (36%), Gaps = 10/79 (12%)
Query: 210 NDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGN--LIINDPRQVE 267
+ + L G P P+ WF L+ + + L++ + ++
Sbjct: 119 STLRLHVMYIGRPVPAMTWFHGQ--------KLLQNSENITIENTEHYTHLVMKNVQRKT 170
Query: 268 DRGSYHCKASNKFGSIISE 286
G Y + SN FG++ +
Sbjct: 171 HAGKYKVQLSNVFGTVDAI 189
Score = 57.4 bits (139), Expect = 2e-09
Identities = 18/132 (13%), Positives = 39/132 (29%), Gaps = 33/132 (25%)
Query: 713 YIWTHNGVRIGNMDLNELETPNINI--DGGL--LEITNASFADAGEYECVVKSTVGKIST 768
W G + +++ + DG L + D G Y C+ + VG++ T
Sbjct: 39 IKWYRFGKEL-------IQSRKYKMSSDGRTHTLTVMTEEQEDEGVYTCIATNEVGEVET 91
Query: 769 KTTVIVEGPPGLPGGV-----QVVEVHKT-----------SATIQWTDGATNGRPIT--- 809
+ ++++ P G V T + W + +
Sbjct: 92 SSKLLLQATPQFHPGYPLKEKYYGAVGSTLRLHVMYIGRPVPAMTWFH---GQKLLQNSE 148
Query: 810 HYKIIARTNWNS 821
+ I ++
Sbjct: 149 NITIENTEHYTH 160
>2yd1_A Tyrosine-protein phosphatase LAR; hydrolase; 1.80A {Drosophila
melanogaster} PDB: 3pxj_A
Length = 212
Score = 154 bits (391), Expect = 6e-43
Identities = 49/224 (21%), Positives = 78/224 (34%), Gaps = 29/224 (12%)
Query: 484 SIQAEPNFTIPLTDKHMDNQADLTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYF 543
+ P ++ + ++ C A G P + W +NG+ ++ Q RY
Sbjct: 2 TGAHPPEIIRKPQNQGVRVGGVASFYCAARGDPPPSIVWRKNGKKVSG------TQSRYT 55
Query: 544 IQDN-----VLTIRYLNPERDPAMYQCRAKNQLKTRYS-SAQLRVLTLK------PSFKK 591
+ + +L I + RD A Y+C A+N + S A L + P +
Sbjct: 56 VLEQPGGISILRIEPVRAGRDDAPYECVAENGVGDAVSADATLTIYEGDKTPAGFPVITQ 115
Query: 592 RPLESETYAGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGNLLISPVSRD 651
P G V + C P P W K+ + R ++G L I +
Sbjct: 116 GP--GTRVIEVGHTVLMTCKAIGNPTPNIYWIKNQTKVDMSNPRYSLKDGFLQIENSREE 173
Query: 652 DSGIYSCTATNVHGMDESKG-RLIVLHGPSYYEQLPPKITIAAH 694
D G Y C A N G + SK L V ++ T H
Sbjct: 174 DQGKYECVAENSMGTEHSKATNLYV--------KVRRVGTKHHH 209
Score = 116 bits (292), Expect = 1e-29
Identities = 47/198 (23%), Positives = 69/198 (34%), Gaps = 24/198 (12%)
Query: 412 KAGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAY------FENFNRILTI-PNVKVEDQG 464
+ G C A G P PS W + G + IL I P D
Sbjct: 19 RVGGVASFYCAARGDPPPSIVWRKNGKKVSGTQSRYTVLEQPGGISILRIEPVRAGRDDA 78
Query: 465 EYICRASNDR-SALESSVTISIQAE-------PNFTIPLTDKHMDNQADLTWTCEAFGVP 516
Y C A N A+ + T++I P T + ++ + TC+A G P
Sbjct: 79 PYECVAENGVGDAVSADATLTIYEGDKTPAGFPVITQGPGTRVIEVGHTVLMTCKAIGNP 138
Query: 517 DVTYSWFRNGELLNSETLPLEDQDRYFIQDNVLTIRYLNPERDPAMYQCRAKNQLKTRYS 576
W +N ++ RY ++D L I E D Y+C A+N + T +S
Sbjct: 139 TPNIYWIKNQTKVD------MSNPRYSLKDGFLQIENSREE-DQGKYECVAENSMGTEHS 191
Query: 577 SA-QLRVLTLKPSFKKRP 593
A L V + K
Sbjct: 192 KATNLYVKV-RRVGTKHH 208
Score = 113 bits (285), Expect = 9e-29
Identities = 49/206 (23%), Positives = 79/206 (38%), Gaps = 24/206 (11%)
Query: 587 PSFKKRPLESETYAGEGGNVTIFCNPEAAPKPKFVWKKDGN-IIGSGGRRKIFENGN--- 642
P ++P GG + +C P P VW+K+G + G+ R + E
Sbjct: 7 PEIIRKP--QNQGVRVGGVASFYCAARGDPPPSIVWRKNGKKVSGTQSRYTVLEQPGGIS 64
Query: 643 -LLISPV-SRDDSGIYSCTATNVHGMDESKG-RLIVLHGPSYYEQLP-----PK-ITIAA 693
L I PV + D Y C A N G S L + G P P I
Sbjct: 65 ILRIEPVRAGRDDAPYECVAENGVGDAVSADATLTIYEGDKTPAGFPVITQGPGTRVIEV 124
Query: 694 HRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEITNASFADAG 753
+ + C A ++ W N ++ ++ P ++ G L+I N+ D G
Sbjct: 125 GHTVLMTCKAIGNPTPNI--YWIKNQTKV------DMSNPRYSLKDGFLQIENSREEDQG 176
Query: 754 EYECVVKSTVGKI-STKTTVIVEGPP 778
+YECV ++++G S T + V+
Sbjct: 177 KYECVAENSMGTEHSKATNLYVKVRR 202
Score = 94.9 bits (236), Expect = 3e-22
Identities = 36/188 (19%), Positives = 65/188 (34%), Gaps = 19/188 (10%)
Query: 323 YPGVNYYWARDYFPNFVEEDKRVFVSYDGALYFSALEQI----DAGNYSCNVQSKVSDTG 378
P + W ++ + + + G + +E + D Y C ++ V D
Sbjct: 33 DPPPSIVWRKNGKKVSGTQSRYTVLEQPGGISILRIEPVRAGRDDAPYECVAENGVGDAV 92
Query: 379 RNGPFFPLKVFPHSNFQQLKFPNNFPKTFPEAPK-----AGDKVRLECVAFGYPVPSYNW 433
L ++ K P FP + P G V + C A G P P+ W
Sbjct: 93 SAD--ATLTIYEGD-----KTPAGFPV-ITQGPGTRVIEVGHTVLMTCKAIGNPTPNIYW 144
Query: 434 TRRGSPLPRNAY-FENFNRILTIPNVKVEDQGEYICRASNDR-SALESSVTISIQAEPNF 491
+ + + + + + L I N + EDQG+Y C A N + + + ++
Sbjct: 145 IKNQTKVDMSNPRYSLKDGFLQIENSREEDQGKYECVAENSMGTEHSKATNLYVKVRRVG 204
Query: 492 TIPLTDKH 499
T H
Sbjct: 205 TKHHHHHH 212
Score = 89.5 bits (222), Expect = 3e-20
Identities = 41/197 (20%), Positives = 59/197 (29%), Gaps = 29/197 (14%)
Query: 190 PYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDK 249
P I++P + + + C A G P PS W K + +
Sbjct: 7 PEIIRKPQNQGVRVGG-----VASFYCAARGDPPPSIVWRKNG--------KKVSGTQSR 53
Query: 250 RFTLSGGN----LIINDPRQVEDRGSYHCKASNKFGSIISESVQLAFGFIGEFNLKRAPE 305
L L I R D Y C A N G +S L + G+ P
Sbjct: 54 YTVLEQPGGISILRIEPVRAGRDDAPYECVAENGVGDAVSADATLTI-YEGDKTPAGFPV 112
Query: 306 IGNQ------NWGKA--MFCDPPTNYPGVNYYWARDYFPNFVEEDKRVFVSYDGALYFSA 357
I G M C P N YW ++ V+ + DG L
Sbjct: 113 ITQGPGTRVIEVGHTVLMTC-KAIGNPTPNIYWIKNQTK--VDMSNPRYSLKDGFLQIEN 169
Query: 358 LEQIDAGNYSCNVQSKV 374
+ D G Y C ++ +
Sbjct: 170 SREEDQGKYECVAENSM 186
Score = 77.9 bits (192), Expect = 3e-16
Identities = 29/111 (26%), Positives = 46/111 (41%), Gaps = 15/111 (13%)
Query: 180 IENPDKIPRGPYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLV 239
E P + P V ++ + ++C A G P P+ W K
Sbjct: 101 YEGDKTPAGFPVITQGPGTRVIEVGH-----TVLMTCKAIGNPTPNIYWIKNQ------- 148
Query: 240 ANLIDPLSDKRFTLSGGNLIINDPRQVEDRGSYHCKASNKFGSIISESVQL 290
+D S+ R++L G L I + R+ ED+G Y C A N G+ S++ L
Sbjct: 149 -TKVDM-SNPRYSLKDGFLQIENSRE-EDQGKYECVAENSMGTEHSKATNL 196
>3oq3_B IFN-alpha/beta binding protein C12R; mousepox virus, moscow strain,
cytokine decoy RE virus/viral protein, type-1
interferon, soluble A/B-IFNR; HET: EPE; 2.10A
{Ectromelia virus}
Length = 329
Score = 156 bits (396), Expect = 3e-42
Identities = 47/286 (16%), Positives = 86/286 (30%), Gaps = 17/286 (5%)
Query: 505 DLTWTCEAFGVPDVTYSWFRNGELLNSETL-PLEDQDRYFIQDNVLTIRYLNPERDPAMY 563
+ C +++ + ++N E + +++ L I Y
Sbjct: 46 PFSAKCPPIEDSLLSHRYNDKDNVVNWEKIGKTRRPLNRRVKNGDLWIANYTSNDSHRRY 105
Query: 564 QCRAKNQLKTRYSSAQLRVLTLKPSFKKRPLESETYAGEGGNVTIFCN-PEAAPKPKFVW 622
C + + PS P E + + ++C A W
Sbjct: 106 LCTVTTKNGDCVQGIVRSHIRKPPSCI--PETYELGTHDKYGIDLYCGILYAKHYNNITW 163
Query: 623 KKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTATNVHGMDESKGRLIVL------ 676
K+ + G + NL+I +DSG Y C ++ +
Sbjct: 164 YKNNQELIIDGTKYSQSGQNLIIHNPELEDSGRYDCYVHYDDVRIKNDIVVSRCKILTVI 223
Query: 677 --HGPSYYEQLPPKITIAAHRNLQLRCSAHTEELLD--VAYIWTHNGVRIGNMDLNE--L 730
+ L PKI + + C+A + LL V W + I +D +
Sbjct: 224 PSQDHRFKLILDPKINVTIGEPANITCTAVSTSLLVDDVLIDWENPSGWIIGLDFGVYSI 283
Query: 731 ETPNINIDGGLLEITNASFADAGE-YECVVKSTVGKISTKTTVIVE 775
T + I L N + G Y C + + TTV++E
Sbjct: 284 LTSSGGITEATLYFENVTEEYIGNTYTCRGHNYYFDKTLTTTVVLE 329
Score = 143 bits (362), Expect = 8e-38
Identities = 49/318 (15%), Positives = 87/318 (27%), Gaps = 41/318 (12%)
Query: 390 PHSNFQQLKFPNNFPKTFPEAPKAGDKVRLECVAFGYPVPSY---------NWTRRGSP- 439
P + + L F T + G+ +C + S+ NW + G
Sbjct: 20 PAKDSKWLNPSCMFGGTMNDMAALGEPFSAKCPPIEDSLLSHRYNDKDNVVNWEKIGKTR 79
Query: 440 LPRNAYFENFNRILTIPNVKVED-QGEYICRASNDR-SALESSVTISIQAEPNFTIPLTD 497
P N +N + L I N D Y+C + ++ V I+ P+ +
Sbjct: 80 RPLNRRVKNGD--LWIANYTSNDSHRRYLCTVTTKNGDCVQGIVRSHIRKPPSCIPETYE 137
Query: 498 KHMDNQADLTWTCEAF-GVPDVTYSWFRNGELLNSETLPLEDQDRYFIQDNVLTIRYLNP 556
++ + C +W++N + L D +Y L I
Sbjct: 138 LGTHDKYGIDLYCGILYAKHYNNITWYKNNQELI------IDGTKYSQSGQNLIIHNPEL 191
Query: 557 ERDPAMYQCRAKNQLKTRYSS------AQLRVLTLKPSFKKRPLESETYAGEGGNVTIFC 610
E D Y C + L V+ + K L+ + G I C
Sbjct: 192 E-DSGRYDCYVHYDDVRIKNDIVVSRCKILTVIPSQDHRFKLILDPKINVTIGEPANITC 250
Query: 611 ----NPEAAPKPKFVWKKDGNIIGSGGRRKI--------FENGNLLISPVSRDDSG-IYS 657
W+ I L V+ + G Y+
Sbjct: 251 TAVSTSLLVDDVLIDWENPSGWIIGLDFGVYSILTSSGGITEATLYFENVTEEYIGNTYT 310
Query: 658 CTATNVHGMDESKGRLIV 675
C N + +++
Sbjct: 311 CRGHNYYFDKTLTTTVVL 328
Score = 118 bits (296), Expect = 4e-29
Identities = 41/288 (14%), Positives = 78/288 (27%), Gaps = 35/288 (12%)
Query: 319 PPTNYPGVNYYWARD------YFPNFVEEDKRVFVSYDGALYFSALEQIDAGN-YSCNVQ 371
PP +++ + V +G L+ + D+ Y C V
Sbjct: 52 PPIEDSLLSHRYNDKDNVVNWEKIGKTRRPLNRRVK-NGDLWIANYTSNDSHRRYLCTVT 110
Query: 372 SKVSDTGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPEAPKAGDKVRLEC-VAFGYPVPS 430
+K D + + P+ P+T+ + L C + + +
Sbjct: 111 TKNGDCVQG--IVRSHIRKP--------PSCIPETYELGTHDKYGIDLYCGILYAKHYNN 160
Query: 431 YNWTRRGSPLP-RNAYFENFNRILTIPNVKVEDQGEYICRASNDRSALESSVTISIQAEP 489
W + L + + L I N ++ED G Y C D +++ + +S
Sbjct: 161 ITWYKNNQELIIDGTKYSQSGQNLIIHNPELEDSGRYDCYVHYDDVRIKNDIVVSRCKIL 220
Query: 490 NFTIPLTDKHMDNQA---------DLTWTCEAFGVP----DVTYSWFRNGELLNS--ETL 534
+ TC A DV W + +
Sbjct: 221 TVIPSQDHRFKLILDPKINVTIGEPANITCTAVSTSLLVDDVLIDWENPSGWIIGLDFGV 280
Query: 535 PLEDQDRYFIQDNVLTIRYLNPERDPAMYQCRAKNQLKTRYSSAQLRV 582
I + L + E Y CR N + + + +
Sbjct: 281 YSILTSSGGITEATLYFENVTEEYIGNTYTCRGHNYYFDKTLTTTVVL 328
Score = 113 bits (284), Expect = 2e-27
Identities = 45/297 (15%), Positives = 81/297 (27%), Gaps = 32/297 (10%)
Query: 210 NDITLSCYAGGYPNPSYEW-FKEDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVED 268
+ C S+ + K++ V + PL + G+L I + +
Sbjct: 45 EPFSAKCPPIEDSLLSHRYNDKDNVVNWEKIGKTRRPL---NRRVKNGDLWIANYTSNDS 101
Query: 269 RGSYHCKASNKFGSIISESVQLAFGFIGEFNLKRAPEIGNQNWGKAMFCDPPTNYPGVNY 328
Y C + K G + V+ + + +G ++C N
Sbjct: 102 HRRYLCTVTTKNGDCVQGIVRSHIRKPPSCIPETYELGTHDKYGIDLYCGILYAKHYNNI 161
Query: 329 YWARDYFPNFVEEDKRVFVSYDGALYFSALEQIDAGNYSC---NVQSKVSDTGRNGPFFP 385
W ++ + D + L E D+G Y C ++ +
Sbjct: 162 TWYKNNQE--LIIDGTKYSQSGQNLIIHNPELEDSGRYDCYVHYDDVRIKNDIVVSRCKI 219
Query: 386 LKVFPHSNFQQLKFPNNFPKTFPEAPKA--GDKVRLECVAFGYPVP----SYNWTRRG-- 437
L V P + F G+ + C A + +W
Sbjct: 220 LTVIPSQ-------DHRFKLILDPKINVTIGEPANITCTAVSTSLLVDDVLIDWENPSGW 272
Query: 438 -SPLPRNAYFENFNR------ILTIPNVKVEDQGE-YICRASNDRSALESSVTISIQ 486
L Y + L NV E G Y CR N + T+ ++
Sbjct: 273 IIGLDFGVYSILTSSGGITEATLYFENVTEEYIGNTYTCRGHNYYFDKTLTTTVVLE 329
Score = 96.8 bits (240), Expect = 8e-22
Identities = 57/337 (16%), Positives = 97/337 (28%), Gaps = 43/337 (12%)
Query: 554 LNPERDPAMYQCRAKNQLKTRYSSAQLRVLTLKPSFKKRPLESETYAGEGGNVTIFCNPE 613
++ E + + + ++ L + S L PS ++ A G + C P
Sbjct: 2 IDIENEITEFFNKMRDTLPAKDSKW------LNPSCMFGGTMNDM-AALGEPFSAKCPPI 54
Query: 614 AAPKPKFV---------WKKDGNIIGSGGRRKIFENGNLLISPVSRDDSG-IYSCTATNV 663
W+K G RR +NG+L I+ + +DS Y CT T
Sbjct: 55 EDSLLSHRYNDKDNVVNWEKIGKTRRPLNRR--VKNGDLWIANYTSNDSHRRYLCTVTTK 112
Query: 664 HGMDESKGRLIVLHGPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIG 723
+G + P ++ + L C W N +
Sbjct: 113 NGDCVQGIVRSHIRKPPSCIPETYELGTHDKYGIDLYCGI-LYAKHYNNITWYKNNQEL- 170
Query: 724 NMDLNELETPNINIDGGLLEITNASFADAGEYECVVKSTVGKISTKTTVIVEGPPGLPGG 783
++ + G L I N D+G Y+C V +I V
Sbjct: 171 -----IIDGTKYSQSGQNLIIHNPELEDSGRYDCYVHYDDVRIKNDIVVSRCKIL----T 221
Query: 784 VQVVEVHKTSATIQWTDGATNGRPIT-----HYKIIARTNWNSTWFNVSEHVIGKEVDRY 838
V + H+ + T G P + + W N S +IG + Y
Sbjct: 222 VIPSQDHRFKLILDPKINVTIGEPANITCTAVSTSLLVDDVLIDWENPSGWIIGLDFGVY 281
Query: 839 TGRKEAS--------IENVLVPWSTYEFKVIAGNELG 867
+ + ENV + + N
Sbjct: 282 SILTSSGGITEATLYFENVTEEYIGNTYTCRGHNYYF 318
>2a38_A Titin; Z1Z2, structural protein; 2.00A {Homo sapiens} PDB: 1ya5_A
2f8v_A
Length = 194
Score = 150 bits (381), Expect = 8e-42
Identities = 58/200 (29%), Positives = 87/200 (43%), Gaps = 14/200 (7%)
Query: 483 ISIQAEPNFTIPLTDKHMDNQADLTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRY 542
++ QA P FT PL + + T+ G P SWFR+G+++++ TLP +
Sbjct: 1 MTTQA-PTFTQPLQSVVVLEGSTATFEAHISGFPVPEVSWFRDGQVISTSTLP---GVQI 56
Query: 543 FIQDN--VLTIRYLNPERDPAMYQCRAKNQLKTRYSSAQLRVL--TLKPSFKKRPLESET 598
D LTI + + Y +A N S+A+L V T P+F +R
Sbjct: 57 SFSDGRAKLTIPAVTKA-NSGRYSLKATNGSGQATSTAELLVKAETAPPNFVQRL--QSM 113
Query: 599 YAGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGN---LLISPVSRDDSGI 655
+G V + P P + +DG I S +I + G+ LLI+ +DSG
Sbjct: 114 TVRQGSQVRLQVRVTGIPTPVVKFYRDGAEIQSSLDFQISQEGDLYSLLIAEAYPEDSGT 173
Query: 656 YSCTATNVHGMDESKGRLIV 675
YS ATN G S L+V
Sbjct: 174 YSVNATNSVGRATSTAELLV 193
Score = 125 bits (316), Expect = 4e-33
Identities = 43/182 (23%), Positives = 68/182 (37%), Gaps = 21/182 (11%)
Query: 414 GDKVRLECVAFGYPVPSYNWTRRGSPLPRNA------YFENFNRILTIPNVKVEDQGEYI 467
G E G+PVP +W R G + + F + LTIP V + G Y
Sbjct: 20 GSTATFEAHISGFPVPEVSWFRDGQVISTSTLPGVQISFSDGRAKLTIPAVTKANSGRYS 79
Query: 468 CRASNDRSALESSVTISIQAE---PNFTIPLTDKHMDNQADLTWTCEAFGVPDVTYSWFR 524
+A+N S+ + ++AE PNF L + + + G+P ++R
Sbjct: 80 LKATNGSGQATSTAELLVKAETAPPNFVQRLQSMTVRQGSQVRLQVRVTGIPTPVVKFYR 139
Query: 525 NGELLNSETLPLEDQDRYFIQDN----VLTIRYLNPERDPAMYQCRAKNQLKTRYSSAQL 580
+G ++ + I L I PE D Y A N + S+A+L
Sbjct: 140 DGA-------EIQSSLDFQISQEGDLYSLLIAEAYPE-DSGTYSVNATNSVGRATSTAEL 191
Query: 581 RV 582
V
Sbjct: 192 LV 193
Score = 122 bits (307), Expect = 9e-32
Identities = 45/205 (21%), Positives = 76/205 (37%), Gaps = 32/205 (15%)
Query: 587 PSFKKRPLESETYAGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKI---FENG-- 641
P+F + EG T + P P+ W +DG +I + + F +G
Sbjct: 6 PTFTQPL--QSVVVLEGSTATFEAHISGFPVPEVSWFRDGQVISTSTLPGVQISFSDGRA 63
Query: 642 NLLISPVSRDDSGIYSCTATNVHGMDESKGRLIVLHGPSYYEQLPPKI-------TIAAH 694
L I V++ +SG YS ATN G S L+V + PP T+
Sbjct: 64 KLTIPAVTKANSGRYSLKATNGSGQATSTAELLVKAETA-----PPNFVQRLQSMTVRQG 118
Query: 695 RNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINI----DGGLLEITNASFA 750
++L+ V + +G I + + I D L I A
Sbjct: 119 SQVRLQVRVTGIPTPVV--KFYRDGAEI-------QSSLDFQISQEGDLYSLLIAEAYPE 169
Query: 751 DAGEYECVVKSTVGKISTKTTVIVE 775
D+G Y ++VG+ ++ ++V+
Sbjct: 170 DSGTYSVNATNSVGRATSTAELLVQ 194
Score = 80.5 bits (199), Expect = 2e-17
Identities = 36/169 (21%), Positives = 57/169 (33%), Gaps = 25/169 (14%)
Query: 330 WARDYFPNFVEEDKRVFVSYDG---ALYFSALEQIDAGNYSCNVQSKVSDTGRNGPFFPL 386
W RD V +S+ L A+ + ++G YS + G+ L
Sbjct: 39 WFRDGQVISTSTLPGVQISFSDGRAKLTIPAVTKANSGRYSLKATNGS---GQATSTAEL 95
Query: 387 KVFPHSNFQQLKFPNNFPKTFPEAPK-----AGDKVRLECVAFGYPVPSYNWTRRGSPLP 441
V + P F + + G +VRL+ G P P + R G+ +
Sbjct: 96 LVKAETA----------PPNFVQRLQSMTVRQGSQVRLQVRVTGIPTPVVKFYRDGAEIQ 145
Query: 442 RNAYF----ENFNRILTIPNVKVEDQGEYICRASNDRSALESSVTISIQ 486
+ F E L I ED G Y A+N S+ + +Q
Sbjct: 146 SSLDFQISQEGDLYSLLIAEAYPEDSGTYSVNATNSVGRATSTAELLVQ 194
Score = 72.1 bits (177), Expect = 2e-14
Identities = 39/203 (19%), Positives = 62/203 (30%), Gaps = 44/203 (21%)
Query: 190 PYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDK 249
P F + VV T + G+P P WF++ +I +
Sbjct: 6 PTFTQPLQSVVVLEGS-----TATFEAHISGFPVPEVSWFRDG--------QVISTSTLP 52
Query: 250 RFTLS----GGNLIINDPRQVEDRGSYHCKASNKFGSIISE---SVQLAFG---FIGEFN 299
+S L I + G Y KA+N G S V+ F+
Sbjct: 53 GVQISFSDGRAKLTIPAV-TKANSGRYSLKATNGSGQATSTAELLVKAETAPPNFVQRLQ 111
Query: 300 LKRAPEIGNQNWGKAMF-C----DPPTNYPGVNYYWARDYFPNFVEEDKRVFVSYDG--- 351
+ G+Q P P V + RD ++ +S +G
Sbjct: 112 SMTVRQ-GSQ----VRLQVRVTGIPT---PVV--KFYRDGAE--IQSSLDFQISQEGDLY 159
Query: 352 ALYFSALEQIDAGNYSCNVQSKV 374
+L + D+G YS N + V
Sbjct: 160 SLLIAEAYPEDSGTYSVNATNSV 182
Score = 60.1 bits (146), Expect = 2e-10
Identities = 20/103 (19%), Positives = 38/103 (36%), Gaps = 17/103 (16%)
Query: 190 PYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDK 249
P F+++ + + L G P P +++++ I D
Sbjct: 104 PNFVQRLQSMTVRQGS-----QVRLQVRVTGIPTPVVKFYRDG--------AEIQSSLDF 150
Query: 250 RFTLSGGN--LIINDPRQVEDRGSYHCKASNKFGSIISESVQL 290
+ + G L+I + ED G+Y A+N G S + +L
Sbjct: 151 QISQEGDLYSLLIAEA-YPEDSGTYSVNATNSVGRATS-TAEL 191
Score = 56.7 bits (137), Expect = 4e-09
Identities = 24/159 (15%), Positives = 51/159 (32%), Gaps = 29/159 (18%)
Query: 684 QLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGL-- 741
Q + + + +V W +G I + L I+ G
Sbjct: 10 QPLQSVVVLEGSTATFEAHISGFPVPEV--SWFRDGQVI---STSTLPGVQISFSDGRAK 64
Query: 742 LEITNASFADAGEYECVVKSTVGKISTKTTVIVEG---PPGLPGGVQVVEVHKTSA---- 794
L I + A++G Y + G+ ++ ++V+ PP +Q + V + S
Sbjct: 65 LTIPAVTKANSGRYSLKATNGSGQATSTAELLVKAETAPPNFVQRLQSMTVRQGSQVRLQ 124
Query: 795 ---------TIQWTDGATNGRPIT---HYKIIARTNWNS 821
+++ +G I ++I + S
Sbjct: 125 VRVTGIPTPVVKFYR---DGAEIQSSLDFQISQEGDLYS 160
>2v44_A NCAM2, neural cell adhesion molecule 2; phosphorylation,
immunoglobulin domain, IG, membrane, homphilic,
glycoprotein, transmembrane; 1.77A {Homo sapiens} PDB:
2xy2_A* 2vaj_A
Length = 189
Score = 149 bits (378), Expect = 2e-41
Identities = 43/196 (21%), Positives = 73/196 (37%), Gaps = 16/196 (8%)
Query: 487 AEPNFTIPLTDKHMDNQADLTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQD 546
A TI L+ + +TC A G P+ + GE + R +Q
Sbjct: 1 ALLQVTISLSKVELSVGESKFFTCTAIGEPESIDWYNPQGE-------KIISTQRVVVQK 53
Query: 547 N----VLTIRYLNPERDPAMYQCRAKNQLKTRYSSAQLRVLTLKPSFKKRPLESETYAGE 602
LTI N E D +Y+C+A + + + + K +F++ S +
Sbjct: 54 EGVRSRLTIYNANIE-DAGIYRCQATDAKGQTQEATVVLEIYQKLTFREVV--SPQEFKQ 110
Query: 603 GGNVTIFCNPEAAPKPKFVWKKDGNII--GSGGRRKIFENGNLLISPVSRDDSGIYSCTA 660
G + + C ++P P W + S R + N NL I +++ D GIY C
Sbjct: 111 GEDAEVVCRVSSSPAPAVSWLYHNEEVTTISDNRFAMLANNNLQILNINKSDEGIYRCEG 170
Query: 661 TNVHGMDESKGRLIVL 676
+ +IV+
Sbjct: 171 RVEARGEIDFRDIIVI 186
Score = 132 bits (333), Expect = 2e-35
Identities = 36/179 (20%), Positives = 66/179 (36%), Gaps = 12/179 (6%)
Query: 412 KAGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYF----ENFNRILTIPNVKVEDQGEYI 467
G+ C A G P + +G + E LTI N +ED G Y
Sbjct: 15 SVGESKFFTCTAIGEPESIDWYNPQGEKIISTQRVVVQKEGVRSRLTIYNANIEDAGIYR 74
Query: 468 CRASNDR-SALESSVTISIQAEPNFTIPLTDKHMDNQADLTWTCEAFGVPDVTYSWFRNG 526
C+A++ + E++V + I + F ++ + D C P SW +
Sbjct: 75 CQATDAKGQTQEATVVLEIYQKLTFREVVSPQEFKQGEDAEVVCRVSSSPAPAVSWLYHN 134
Query: 527 ELLNSETLPLEDQDRYFI-QDNVLTIRYLNPERDPAMYQCRAKNQLKTRYSSAQLRVLT 584
E + +R+ + +N L I +N D +Y+C + + + + V+
Sbjct: 135 -----EEVTTISDNRFAMLANNNLQILNINKS-DEGIYRCEGRVEARGEIDFRDIIVIV 187
Score = 124 bits (314), Expect = 7e-33
Identities = 31/193 (16%), Positives = 63/193 (32%), Gaps = 13/193 (6%)
Query: 587 PSFKKRPLESETYAGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENG---NL 643
S+ G + C P+ + G I S R + + G L
Sbjct: 3 LQVTISL--SKVELSVGESKFFTCTAIGEPESIDWYNPQGEKIISTQRVVVQKEGVRSRL 60
Query: 644 LISPVSRDDSGIYSCTATNVHGMDESKGRLIVLHGPSYYEQLPPKITIAAHRNLQLRCSA 703
I + +D+GIY C AT+ G + ++ ++ + ++ + ++ C
Sbjct: 61 TIYNANIEDAGIYRCQATDAKGQTQEATVVLEIYQKLTFREVVSPQEFKQGEDAEVVCRV 120
Query: 704 HTEELLDVAYIWTHNGVRIGNMDLNELETPNINI-DGGLLEITNASFADAGEYECVVKST 762
+ V W ++ + + + L+I N + +D G Y C +
Sbjct: 121 SSSPAPAV--SWLYHNEEV-----TTISDNRFAMLANNNLQILNINKSDEGIYRCEGRVE 173
Query: 763 VGKISTKTTVIVE 775
+IV
Sbjct: 174 ARGEIDFRDIIVI 186
Score = 79.4 bits (196), Expect = 4e-17
Identities = 30/198 (15%), Positives = 55/198 (27%), Gaps = 37/198 (18%)
Query: 190 PYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDK 249
+ V + + +C A G P + +S +
Sbjct: 3 LQVTISLSKVELSVGE-----SKFFTCTAIGEPESIDWYNP----------QGEKIISTQ 47
Query: 250 RFTL----SGGNLIINDPRQVEDRGSYHCKASNKFGSIISESVQLAFGFIGEFNLKRAPE 305
R + L I + +ED G Y C+A++ G +V L + +
Sbjct: 48 RVVVQKEGVRSRLTIYNA-NIEDAGIYRCQATDAKGQTQEATVVL--------EIYQKLT 98
Query: 306 IGNQ------NWGK-AMF-CDPPTNYPGVNYYWARDYFPNFVEEDKRVFVSYDGALYFSA 357
G+ A C ++ P W D R + + L
Sbjct: 99 FREVVSPQEFKQGEDAEVVCR-VSSSPAPAVSWLYHNEEVTTISDNRFAMLANNNLQILN 157
Query: 358 LEQIDAGNYSCNVQSKVS 375
+ + D G Y C + +
Sbjct: 158 INKSDEGIYRCEGRVEAR 175
Score = 68.3 bits (167), Expect = 3e-13
Identities = 20/97 (20%), Positives = 33/97 (34%), Gaps = 15/97 (15%)
Query: 190 PYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDK 249
F + + F + D + C P P+ W + + +SD
Sbjct: 97 LTFREVVSPQEFKQGE-----DAEVVCRVSSSPAPAVSWLYHN--------EEVTTISDN 143
Query: 250 RFT-LSGGNLIINDPRQVEDRGSYHCKASNKFGSIIS 285
RF L+ NL I + + D G Y C+ + I
Sbjct: 144 RFAMLANNNLQILNINK-SDEGIYRCEGRVEARGEID 179
>1nn8_R CD155 antigen, poliovirus receptor; icosahedral virus,
picornavirus, virus/receptor complex; 15.00A {Homo
sapiens} SCOP: i.6.1.1 PDB: 1dgi_R
Length = 302
Score = 151 bits (381), Expect = 1e-40
Identities = 44/295 (14%), Positives = 89/295 (30%), Gaps = 38/295 (12%)
Query: 413 AGDKVRLECVAFGYPVPSYN-----WTRRGSPLPRNAYFENFNRI--------------- 452
GD V L C + + W R G + +
Sbjct: 14 LGDSVTLPCYLQVPNMEVTHVSQLTWARHGESGSMAVFHQTQGPSYSESKRLEFVAARLG 73
Query: 453 -------LTIPNVKVEDQGEYICRASNDRSALES-SVTISIQAEPNFTIPLTDKHMDNQA 504
L + ++VED+G Y C S + + + A+P T + + +
Sbjct: 74 AELRNASLRMFGLRVEDEGNYTCLFVTFPQGSRSVDIWLRVLAKPQNTAEVQKVQLTGEP 133
Query: 505 DLTWTCEAF-GVPDVTYSWFRNGELLNSETLPLEDQDRYFIQDNVLTIRYLNPERDPAMY 563
C + G P +W + + + + ++ + + D
Sbjct: 134 VPMARCVSTGGRPPAQITWHSDLGGMPNTSQVPGFLSGTVTVTSLWILVPSSQV-DGKNV 192
Query: 564 QCRAKNQL--KTRYSSAQLRVLTLKPSFKKRPLESETYAGEGGNVTIFCNPEAAPKP-KF 620
C+ +++ K + + L V + T+ C+ + P+P +
Sbjct: 193 TCKVEHESFEKPQLLTVNLTVYYPPEVSISGY--DNNWYLGQNEATLTCDARSNPEPTGY 250
Query: 621 VWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTATNVHGMDESKGRLIV 675
W G + + LLI PV + + C TN G +++ + V
Sbjct: 251 NWSTTM---GPLPPFAVAQGAQLLIRPVDKPINTTLICNVTNALGARQAELTVQV 302
Score = 127 bits (320), Expect = 2e-32
Identities = 48/300 (16%), Positives = 75/300 (25%), Gaps = 44/300 (14%)
Query: 505 DLTWTCEAFGVPDVTY-----SWFRNGELLNSETL------PLEDQDRYFI--------- 544
+T C +W R+GE + + R
Sbjct: 17 SVTLPCYLQVPNMEVTHVSQLTWARHGESGSMAVFHQTQGPSYSESKRLEFVAARLGAEL 76
Query: 545 QDNVLTIRYLNPERDPAMYQCRAKN-QLKTRYSSAQLRVLTLKPSFKKRPLESETYAGEG 603
++ L + L E D Y C +R LRVL KP +
Sbjct: 77 RNASLRMFGLRVE-DEGNYTCLFVTFPQGSRSVDIWLRVL-AKPQNTAEV--QKVQLTGE 132
Query: 604 GNVTIFCN-PEAAPKPKFVWKKDGNIIGSGGRRKIFENGN------LLISPVSRDDSGIY 656
C P + W D + + + F +G ++ P S+ D
Sbjct: 133 PVPMARCVSTGGRPPAQITWHSDLGGMPNTSQVPGFLSGTVTVTSLWILVPSSQVDGKNV 192
Query: 657 SCTATN--VHGMDESKGRLIVLHGPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYI 714
+C + L V + P L C A + Y
Sbjct: 193 TCKVEHESFEKPQLLTVNLTVYYPPEVSISGYDNNWYLGQNEATLTCDARSN-PEPTGYN 251
Query: 715 WTHNGVRIGNMDLNELETPNINIDGGLLEITNASFADAGEYECVVKSTVGKISTKTTVIV 774
W+ + P G L I C V + +G + TV V
Sbjct: 252 WSTTMGPL---------PPFAVAQGAQLLIRPVDKPINTTLICNVTNALGARQAELTVQV 302
Score = 115 bits (290), Expect = 1e-28
Identities = 56/319 (17%), Positives = 88/319 (27%), Gaps = 44/319 (13%)
Query: 192 FIKQPTDVVFDLSKRSILND-ITLSCYAGGYPNPSY-----EWFKEDYVQDRLVANLIDP 245
++ PT V L D +TL CY W + V +
Sbjct: 3 VVQAPTQV------PGFLGDSVTLPCYLQVPNMEVTHVSQLTWARHGESGSMAVFHQTQG 56
Query: 246 LS------------DKRFTLSGGNLIINDPRQVEDRGSYHCKASNKFGSIISESVQLAFG 293
S L +L + +VED G+Y C S + L
Sbjct: 57 PSYSESKRLEFVAARLGAELRNASLRMFG-LRVEDEGNYTCLFVTFPQGSRSVDIWLRVL 115
Query: 294 FIGEFNLKRAPEIGNQNWGKAMFCDPPTNYPGVNYYWARDYFPNFVEEDKRVF----VSY 349
+ + C P W D F V+
Sbjct: 116 AKPQNTAEVQKVQLTGEPVPMARCVSTGGRPPAQITWHSDLGGMPNTSQVPGFLSGTVTV 175
Query: 350 DGALYFSALEQIDAGNYSCNVQSKVSDTGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPE 409
Q+D N +C V+ + + + L V +P + +
Sbjct: 176 TSLWILVPSSQVDGKNVTCKVEHESFEKPQLLT-VNLTV---------YYPPEVSISGYD 225
Query: 410 AP--KAGDKVRLECVAFGYPVP-SYNWTRRGSPLPRNAYFENFNRILTIPNVKVEDQGEY 466
++ L C A P P YNW+ PLP A + L I V
Sbjct: 226 NNWYLGQNEATLTCDARSNPEPTGYNWSTTMGPLPPFAVAQ--GAQLLIRPVDKPINTTL 283
Query: 467 ICRASNDRSALESSVTISI 485
IC +N A ++ +T+ +
Sbjct: 284 ICNVTNALGARQAELTVQV 302
Score = 76.3 bits (187), Expect = 4e-15
Identities = 30/206 (14%), Positives = 52/206 (25%), Gaps = 39/206 (18%)
Query: 602 EGGNVTIFCNPEAAPKP-----KFVWKKDGNIIG---------------------SGGRR 635
G +VT+ C + + W + G +
Sbjct: 14 LGDSVTLPCYLQVPNMEVTHVSQLTWARHGESGSMAVFHQTQGPSYSESKRLEFVAARLG 73
Query: 636 KIFENGNLLISPVSRDDSGIYSCTA-TNVHGMDESKGRLIVLHGPSYYEQLPPKITIAAH 694
N +L + + +D G Y+C T G L VL P + K+ +
Sbjct: 74 AELRNASLRMFGLRVEDEGNYTCLFVTFPQGSRSVDIWLRVLAKPQNTAE-VQKVQLTGE 132
Query: 695 RNLQLRCSAHTEELLDVAY-----IWTHNGVRIGNMDLNELETPNINIDGGLLEITNASF 749
RC + W + + N L + +S
Sbjct: 133 PVPMARCVSTG------GRPPAQITWHSDLGGMPNTSQVPGFLSGTVTVTSLWILVPSSQ 186
Query: 750 ADAGEYECVVKSTVGKISTKTTVIVE 775
D C V+ + TV +
Sbjct: 187 VDGKNVTCKVEHESFEKPQLLTVNLT 212
>1wio_A CD4, T-cell surface glycoprotein CD4; immunoglobulin fold,
transmembrane, MHC lipoprotein, polymorphism; 3.90A
{Homo sapiens} SCOP: b.1.1.1 b.1.1.1 b.1.1.3 b.1.1.3
PDB: 1wip_A 1wiq_A 3t0e_E
Length = 363
Score = 148 bits (374), Expect = 5e-39
Identities = 51/410 (12%), Positives = 100/410 (24%), Gaps = 96/410 (23%)
Query: 412 KAGDKVRLECVAFGYPVPSYNWTRRGSPL---------------------PRNAYFENFN 450
K GD V L C A ++W R + ++ N
Sbjct: 7 KKGDTVELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQGN 66
Query: 451 RILTIPNVKVEDQGEYICRASNDRSALESSVTISIQAEPNFTIPLTDKHMDNQADLTWTC 510
L I N+K+ED YIC + + ++ V + A + + LT T
Sbjct: 67 FPLIIKNLKIEDSDTYICEVEDQKEEVQLLV-FGLTANSDTHLLQGQ-------SLTLTL 118
Query: 511 EAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQDNVLTIRYLNPERDPAMYQCRAKNQ 570
E+ + L++ L + D + C
Sbjct: 119 ESPPGSSPSVQCRSPRGKNIQG-------------GKTLSVSQLELQ-DSGTWTCTVLQN 164
Query: 571 LKTRYSSAQLRVLTLKPS-------------FKKRPLESETYAGEGGNVTIFCNPEAAPK 617
K + VL + + F + G + ++ K
Sbjct: 165 QKKVEFKIDIVVLAFQKASSIVYKKEGEQVEFSFPLAFTVEKLTGSGELWWQAERASSSK 224
Query: 618 P--KFVWKKDGNIIGSGGRRKIFE-------NGNLLISPVSRDDSGIYSCTATNVHGMDE 668
F K + + + + L + SG + G
Sbjct: 225 SWITFDLKNKEVSVKRVTQDPKLQMGKKLPLHLTLPQALPQYAGSGNLTLALEAKTGKLH 284
Query: 669 SKGRLIVLHGPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLN 728
+ L+V+ L C +
Sbjct: 285 QEVNLVVMRATQ--------------LQKNLTCEVWGPTSPKLMLSLKLENKEAKV---- 326
Query: 729 ELETPNINIDGGLLEITNASFADAGEYECVVKSTVGKISTKTTVIVEGPP 778
+ +AG ++C++ + G++ ++ + V P
Sbjct: 327 ----------SKREKAVWVLNPEAGMWQCLLSDS-GQVLLESNIKV--LP 363
Score = 134 bits (337), Expect = 4e-34
Identities = 44/348 (12%), Positives = 96/348 (27%), Gaps = 77/348 (22%)
Query: 339 VEEDKRVFVSYDGALYFSALEQIDAGNYSCNVQSKVSDTGRNGPFFPLKVFPHSNFQQLK 398
+ + ++ + L L+ D+ Y C V+ + + F L ++ Q
Sbjct: 55 ADSRRSLWDQGNFPLIIKNLKIEDSDTYICEVEDQKEEVQL--LVFGLTANSDTHLLQ-- 110
Query: 399 FPNNFPKTFPEAPKAGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYFENFNRILTIPNV 458
G + L + PS PR + + L++ +
Sbjct: 111 ---------------GQSLTLTLESPPGSSPSVQCRS-----PRGKNIQG-GKTLSVSQL 149
Query: 459 KVEDQGEYICRASNDRSALESSVTISIQAEP--------------NFTIPLT--DKHMDN 502
+++D G + C ++ +E + I + A F+ PL + +
Sbjct: 150 ELQDSGTWTCTVLQNQKKVEFKIDIVVLAFQKASSIVYKKEGEQVEFSFPLAFTVEKLTG 209
Query: 503 QADLTWTCEAFGVPD--VTYSWFRNGELLNSETLPLEDQDRYFIQDNV---LTIRYLNPE 557
+L W E +T+ + T + + + LT+ P+
Sbjct: 210 SGELWWQAERASSSKSWITFDLKNKEVSVKRVT----QDPKLQMGKKLPLHLTLPQALPQ 265
Query: 558 R-DPAMYQCRAKNQLKTRYSSAQLRVLTLKPSFKKRPLESETYAGEGGNVTIFCNPEAAP 616
+ + + L V+ + C
Sbjct: 266 YAGSGNLTLALEAKTGKLHQEVNLVVMRA----------------TQLQKNLTCEVWGPT 309
Query: 617 KPK--FVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTATN 662
PK K + R K V ++G++ C ++
Sbjct: 310 SPKLMLSLKLENKEAKVSKREKAVW--------VLNPEAGMWQCLLSD 349
Score = 127 bits (321), Expect = 4e-32
Identities = 49/321 (15%), Positives = 96/321 (29%), Gaps = 49/321 (15%)
Query: 509 TCEAFGVPDVTYSWFRNGELL-----------NSETLPLEDQDRYFIQDN---VLTIRYL 554
TC A + + W + ++ L R + D L I+ L
Sbjct: 15 TCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQGNFPLIIKNL 74
Query: 555 NPERDPAMYQCRAKNQLKTRYSSAQLRVLTLKPSFKKRPLESETYAGEGGNVTIFCNPEA 614
E D Y C ++Q QL V L + S+T+ +G ++T+
Sbjct: 75 KIE-DSDTYICEVEDQ----KEEVQLLVFGLTAN-------SDTHLLQGQSLTLTLESPP 122
Query: 615 APKPKFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTATNVHGMDESKGRLI 674
P + + I L +S + DSG ++CT E K ++
Sbjct: 123 GSSPSVQCRSPRG-------KNIQGGKTLSVSQLELQDSGTWTCTVLQNQKKVEFKIDIV 175
Query: 675 VLHGPSYYEQLPPK---------------ITIAAHRNLQLRCSAHTEELLDVAYIWTHNG 719
VL + K + L + + + + +
Sbjct: 176 VLAFQKASSIVYKKEGEQVEFSFPLAFTVEKLTGSGELWWQAERASSSKSWITFDLKNKE 235
Query: 720 VRIGNMDLNELETPNINIDGGL-LEITNASFADAGEYECVVKSTVGKISTKTTVIVEGPP 778
V + + + + L L +A +G +++ GK+ + ++V
Sbjct: 236 VSVKRVTQDPKLQMGKKLPLHLTLPQALPQYAGSGNLTLALEAKTGKLHQEVNLVVMRAT 295
Query: 779 GLPGGVQVVEVHKTSATIQWT 799
L + TS + +
Sbjct: 296 QLQKNLTCEVWGPTSPKLMLS 316
Score = 101 bits (251), Expect = 6e-23
Identities = 57/407 (14%), Positives = 105/407 (25%), Gaps = 89/407 (21%)
Query: 211 DITLSCYAGGYPNPSYEWFKED---------YVQDRLVANLIDPLSDKRFTLSGGN--LI 259
+ L+C A + + W + + + L D +R GN LI
Sbjct: 11 TVELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQGNFPLI 70
Query: 260 INDPRQVEDRGSYHCKASNKFGSIISESVQLAFGFIGEFNLKRAPEIGNQNWGKA--MFC 317
I + ++ED +Y C+ ++ E VQL F L + + G++ +
Sbjct: 71 IKNL-KIEDSDTYICEVEDQ-----KEEVQL-----LVFGLTANSDT-HLLQGQSLTLTL 118
Query: 318 DPPTNYPGVNYYWARDYFPNFVEEDKRVFVSYDGALYFSALEQIDAGNYSCNVQSKVSDT 377
+ + N L S LE D+G ++C V
Sbjct: 119 E-SPPGSSPSVQCRSPRGKNIQG---------GKTLSVSQLELQDSGTWTCTVLQNQKKV 168
Query: 378 GRNGPFFPLKVFPHSNFQQLKFPN-------NFPKTFPEAPKAGDKVRLECVAFGYPVP- 429
+ V + + +FP F K L A
Sbjct: 169 EFK---IDIVVLAFQKASSIVYKKEGEQVEFSFPLAFTVE-KLTGSGELWWQAERASSSK 224
Query: 430 ---SYNWTRRGSPLPRNAYFENFNR--------ILTIPNVKVEDQGEYICRASNDRSALE 478
+++ + + R L + G L
Sbjct: 225 SWITFDLKNKEVSVKRVTQDPKLQMGKKLPLHLTLPQALPQYAGSGNLTLALEAKTGKLH 284
Query: 479 SSVTISIQAEPNFTIPLTDKHMDNQADLTWTCEAFGV--PDVTYSWFRNGELLNSETLPL 536
V + + Q TCE +G P + S +
Sbjct: 285 QEVNLVVMRAT-------------QLQKNLTCEVWGPTSPKLMLSLKLENKEAKV----- 326
Query: 537 EDQDRYFIQDNVLTIRYLNPERDPAMYQCRAKNQLKTRYSSAQLRVL 583
++ + M+QC + + S ++VL
Sbjct: 327 ---------SKREKAVWVLNP-EAGMWQCLLSDSGQVLLES-NIKVL 362
Score = 96.0 bits (238), Expect = 2e-21
Identities = 31/210 (14%), Positives = 55/210 (26%), Gaps = 44/210 (20%)
Query: 599 YAGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFE------------------- 639
+G V + C +F WK I G +
Sbjct: 5 LGKKGDTVELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQ 64
Query: 640 -NGNLLISPVSRDDSGIYSCTATNVHGMDESKGRLIVLHGPSYYEQLPPKITIAAHRNLQ 698
N L+I + +DS Y C + + + +L+V + + ++L
Sbjct: 65 GNFPLIIKNLKIEDSDTYICEVED----QKEEVQLLVFGLTA-----NSDTHLLQGQSLT 115
Query: 699 LRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEITNASFADAGEYECV 758
L + V G L ++ D+G + C
Sbjct: 116 LTLESPPGSSPSV--QCRSPR-------------GKNIQGGKTLSVSQLELQDSGTWTCT 160
Query: 759 VKSTVGKISTKTTVIVEGPPGLPGGVQVVE 788
V K+ K ++V V E
Sbjct: 161 VLQNQKKVEFKIDIVVLAFQKASSIVYKKE 190
Score = 31.7 bits (71), Expect = 1.3
Identities = 10/81 (12%), Positives = 25/81 (30%), Gaps = 16/81 (19%)
Query: 210 NDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVEDR 269
L+C G +P + L +K +S + +
Sbjct: 297 LQKNLTCEVWGPTSPKLMLSLK--------------LENKEAKVSKREKAVW--VLNPEA 340
Query: 270 GSYHCKASNKFGSIISESVQL 290
G + C S+ ++ ++++
Sbjct: 341 GMWQCLLSDSGQVLLESNIKV 361
>2o26_X MAST/stem cell growth factor receptor; stem cell factor, receptor
tyrosine kinase, class III, recep ligand complex,
cytokine, 4-helix bundle; HET: NAG FUL MAN NDG; 2.50A
{Mus musculus}
Length = 290
Score = 145 bits (366), Expect = 1e-38
Identities = 48/279 (17%), Positives = 79/279 (28%), Gaps = 30/279 (10%)
Query: 412 KAGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYFENFNRILTIPNVKVEDQGEYICRAS 471
+AGD + L C+ WT + N EN + G Y C S
Sbjct: 25 EAGDTLSLTCIDPD----FVRWTFKTYF---NEMVENKKNEWIQEKAEATRTGTYTCSNS 77
Query: 472 NDRSALESSVTISIQAEPNFTIPLTDKHMDNQADLTWTCEAFGVPDVTYSWFRNGELLNS 531
N + SS+ + ++ + +D C YS
Sbjct: 78 NGLT---SSIYVFVRDPAKLFLVGLPLFGKEDSDALVRCPLTDPQVSQYSLIECD----- 129
Query: 532 ETLPLEDQDRYFIQDNV-LTIRYLNPERDPAMYQCRAKNQLKTRYSSA-QLRVLTLKPSF 589
L + +TI+ + +C A+ +S L+V +
Sbjct: 130 -GKSLPTDLTFVPNPKAGITIKNVKRAYHRLCVRCAAQRDGTWLHSDKFTLKVREAIKAI 188
Query: 590 KKRPLE-SETYAGEGGNVTIFCNPEAAPKP-KFVWKKDGNIIGSGGRRKIF--------- 638
+ + +G T+ C + +W K + K
Sbjct: 189 PVVSVPETSHLLKKGDTFTVVCTIKDVSTSVNSMWLKMNPQPQHIAQVKHNSWHRGDFNY 248
Query: 639 -ENGNLLISPVSRDDSGIYSCTATNVHGMDESKGRLIVL 676
L IS DDSG++ C A N G L V+
Sbjct: 249 ERQETLTISSARVDDSGVFMCYANNTFGSANVTTTLKVV 287
Score = 113 bits (283), Expect = 1e-27
Identities = 40/300 (13%), Positives = 78/300 (26%), Gaps = 40/300 (13%)
Query: 489 PNFTIPLTDKHMDNQADLTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQDNV 548
P+ ++ ++ L+ TC W T + + N
Sbjct: 13 PSIHPAQSELIVEAGDTLSLTCIDPD----FVRW----------TFKTYFNEMVENKKNE 58
Query: 549 LTIRYLNPERDPAMYQCRAKNQLKTRYSSAQLRVLTLKPSFKKRPLESETYAGEGGNVTI 608
Y C N SS + V + E + +
Sbjct: 59 WIQEKAEAT-RTGTYTCSNSN---GLTSSIYVFVRD-PAKLFLVG--LPLFGKEDSDALV 111
Query: 609 FCNPEAAPKPKFVWKK-DGNIIGSGGRRKIFENGNLLISPVSR-DDSGIYSCTATNVHGM 666
C ++ + DG + + + I V R C A
Sbjct: 112 RCPLTDPQVSQYSLIECDGKSLPTDLTFVPNPKAGITIKNVKRAYHRLCVRCAAQRDGTW 171
Query: 667 DESKG-RLIVLHGPSYYEQLPPKITIAAHR-------NLQLRCSAHTEELLDVAYIWTHN 718
S L V P +++ + C+ + V +W
Sbjct: 172 LHSDKFTLKVREAIKA----IPVVSVPETSHLLKKGDTFTVVCTI-KDVSTSVNSMWLKM 226
Query: 719 GVRIGNMDLNELETPNINIDG----GLLEITNASFADAGEYECVVKSTVGKISTKTTVIV 774
+ ++ + + + L I++A D+G + C +T G + TT+ V
Sbjct: 227 NPQPQHIAQVKHNSWHRGDFNYERQETLTISSARVDDSGVFMCYANNTFGSANVTTTLKV 286
Score = 102 bits (254), Expect = 7e-24
Identities = 45/288 (15%), Positives = 78/288 (27%), Gaps = 41/288 (14%)
Query: 211 DITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVEDRG 270
++L+C W + Y ++ I + G
Sbjct: 29 TLSLTCID----PDFVRWTFKTYF-------------NEMVENKKNEWIQEKA-EATRTG 70
Query: 271 SYHCKASNKFGSIISESVQLAFGFIGEFNLKRAPEIGNQNWGKAMFCDPPTNYPGVNYYW 330
+Y C SN S I V+ + L P G ++ + C P T+ Y
Sbjct: 71 TYTCSNSNGLTSSIYVFVRDP----AKLFLVGLPLFGKEDSDALVRC-PLTDPQVSQYSL 125
Query: 331 ARDYFPNFVEEDKRVFVSYDGALYFSALEQIDAGNYSCNVQSKVSDTGRNGPFFPLKVFP 390
+ + V G + C Q + + F LKV
Sbjct: 126 IECDGKSLPTDLTFVPNPKAGITIKNVKRAYHRLCVRCAAQRDGTWLHSDK--FTLKVRE 183
Query: 391 HSNFQQLKFPNNFPKTFPEAPKAGDKVRLECVAFGYPVP-SYNWTRRGSPLP-------- 441
P K GD + C + W +
Sbjct: 184 AIKA----IPVVSVPETSHLLKKGDTFTVVCTIKDVSTSVNSMWLKMNPQPQHIAQVKHN 239
Query: 442 ---RNAYFENFNRILTIPNVKVEDQGEYICRASNDRSALESSVTISIQ 486
R + LTI + +V+D G ++C A+N + + T+ +
Sbjct: 240 SWHRGDFNYERQETLTISSARVDDSGVFMCYANNTFGSANVTTTLKVV 287
>3grw_A Fibroblast growth factor receptor 3; FGFR3, protein-protein
complex, receptor tyrosine kinas binding, immunoglobulin
domain, kinase, membrane, nucleotid binding; HET: NAG;
2.10A {Homo sapiens}
Length = 241
Score = 141 bits (358), Expect = 3e-38
Identities = 48/241 (19%), Positives = 74/241 (30%), Gaps = 33/241 (13%)
Query: 487 AEPNFTIPLTDKHMDNQA----DLTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRY 542
P +T P + + C A G P + SW +NG E +
Sbjct: 10 GAPYWTRPERMDKKLLAVPAANTVRFRCPAAGNPTPSISWLKNGREFRGE--HRIGGIKL 67
Query: 543 FIQDNVLTIRYLNPERDPAMYQCRAKNQLKTRYSSAQLRVL----TLKPSFKKRPLESET 598
Q L + + P D Y C +N+ + + L VL P +
Sbjct: 68 RHQQWSLVMESVVPS-DRGNYTCVVENKFGSIRQTYTLDVLERSPHRPILQAGLP--ANQ 124
Query: 599 YAGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGS---------------GGRRKIFENGNL 643
A G +V C + +P W K + GS + + L
Sbjct: 125 TAVLGSDVEFHCKVYSDAQPHIQWLKHVEVNGSKVGPDGTPYVTVLKSWISESVEADVRL 184
Query: 644 LISPVSRDDSGIYSCTATNVHGMDESKGRLIVLHGPSYYEQLPPKITIAAHRNLQLRCSA 703
++ VS D G Y C ATN G+ E L V + + + A +
Sbjct: 185 RLANVSERDGGEYLCRATNFIGVAEKAFWLSVHGPRA-----AEEELVEADEAGSVHHHH 239
Query: 704 H 704
H
Sbjct: 240 H 240
Score = 131 bits (331), Expect = 1e-34
Identities = 44/239 (18%), Positives = 74/239 (30%), Gaps = 23/239 (9%)
Query: 576 SSAQLRVLTLKPSFKKRPL--ESETYAGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGG 633
+ V T P + + + V C P P W K+G
Sbjct: 1 ADPDTGVDTGAPYWTRPERMDKKLLAVPAANTVRFRCPAAGNPTPSISWLKNGREFRGEH 60
Query: 634 RRKIF----ENGNLLISPVSRDDSGIYSCTATNVHGMDESKGRLIVL----HGPSYYEQL 685
R + +L++ V D G Y+C N G L VL H P L
Sbjct: 61 RIGGIKLRHQQWSLVMESVVPSDRGNYTCVVENKFGSIRQTYTLDVLERSPHRPILQAGL 120
Query: 686 PPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGN---------MDLNELETPNIN 736
P T +++ C +++ + W + G+ + + +
Sbjct: 121 PANQTAVLGSDVEFHCKVYSDAQPHI--QWLKHVEVNGSKVGPDGTPYVTVLKSWISESV 178
Query: 737 IDGGLLEITNASFADAGEYECVVKSTVGKISTKTTVIVEGPPGLPGGVQVVEVHKTSAT 795
L + N S D GEY C + +G + V GP ++VE + +
Sbjct: 179 EADVRLRLANVSERDGGEYLCRATNFIGVAEKAFWLSVHGPRAAEE--ELVEADEAGSV 235
Score = 123 bits (309), Expect = 1e-31
Identities = 43/214 (20%), Positives = 78/214 (36%), Gaps = 25/214 (11%)
Query: 413 AGDKVRLECVAFGYPVPSYNWTRRGSPLPRNA-----YFENFNRILTIPNVKVEDQGEYI 467
A + VR C A G P PS +W + G + L + +V D+G Y
Sbjct: 29 AANTVRFRCPAAGNPTPSISWLKNGREFRGEHRIGGIKLRHQQWSLVMESVVPSDRGNYT 88
Query: 468 CRASNDRSALESSVTISIQAEPNFTIPLTDKHMDNQ-----ADLTWTCEAFGVPDVTYSW 522
C N ++ + T+ + L NQ +D+ + C+ + W
Sbjct: 89 CVVENKFGSIRQTYTLDVLERSPHRPILQAGLPANQTAVLGSDVEFHCKVYSDAQPHIQW 148
Query: 523 FRNGELLNSETLP--------LEDQDRYFIQDN-VLTIRYLNPERDPAMYQCRAKNQLKT 573
++ E+ S+ P L+ ++ + L + ++ D Y CRA N +
Sbjct: 149 LKHVEVNGSKVGPDGTPYVTVLKSWISESVEADVRLRLANVSER-DGGEYLCRATNFIGV 207
Query: 574 RYSSAQLRVLTLKPSFKKRPLESETYAGEGGNVT 607
+ L V + ++ +E A E G+V
Sbjct: 208 AEKAFWLSVHG-PRAAEEELVE----ADEAGSVH 236
Score = 80.4 bits (198), Expect = 7e-17
Identities = 35/197 (17%), Positives = 56/197 (28%), Gaps = 34/197 (17%)
Query: 323 YPGVNYYWARDYFPNFVEE--DKRVFVSYDGALYFSALEQIDAGNYSCNVQSKVSDTGRN 380
P + W ++ E +L ++ D GNY+C V++K G
Sbjct: 42 NPTPSISWLKNGREFRGEHRIGGIKLRHQQWSLVMESVVPSDRGNYTCVVENKF---GSI 98
Query: 381 GPFFPLKVFPHSNFQQLKFPNNFPKTFPEAPK-----AGDKVRLECVAFGYPVPSYNWTR 435
+ L V + P P G V C + P W +
Sbjct: 99 RQTYTLDVLER--------SPHRPILQAGLPANQTAVLGSDVEFHCKVYSDAQPHIQWLK 150
Query: 436 RGSPLPRNAYFENFNRI----------------LTIPNVKVEDQGEYICRASNDRSALES 479
+ + L + NV D GEY+CRA+N E
Sbjct: 151 HVEVNGSKVGPDGTPYVTVLKSWISESVEADVRLRLANVSERDGGEYLCRATNFIGVAEK 210
Query: 480 SVTISIQAEPNFTIPLT 496
+ +S+ L
Sbjct: 211 AFWLSVHGPRAAEEELV 227
Score = 70.4 bits (172), Expect = 2e-13
Identities = 40/219 (18%), Positives = 66/219 (30%), Gaps = 40/219 (18%)
Query: 181 ENPDKIPRG-PYFIK----QPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQ 235
+ + G PY+ + + + N + C A G P PS W K
Sbjct: 2 DPDTGVDTGAPYWTRPERMDKKLLAVPAA-----NTVRFRCPAAGNPTPSISWLK----- 51
Query: 236 DRLVANLIDPLSDKRFTLSGGNLIINDPRQVEDRGSYHCKASNKFGSIISESVQLAFGFI 295
+ + + +L++ DRG+Y C NKFGS I ++ L +
Sbjct: 52 NGREFRGEHRIGGIKLRHQQWSLVMESVVP-SDRGNYTCVVENKFGS-IRQTYTLD---V 106
Query: 296 GEFNLKRAPEIG----NQ--NWGK--AMFC----DPP--------TNYPGVNYYWARDYF 335
E + R NQ G C D G +
Sbjct: 107 LERSPHRPILQAGLPANQTAVLGSDVEFHCKVYSDAQPHIQWLKHVEVNGSKVGPDGTPY 166
Query: 336 PNFVEEDKRVFVSYDGALYFSALEQIDAGNYSCNVQSKV 374
++ V D L + + + D G Y C + +
Sbjct: 167 VTVLKSWISESVEADVRLRLANVSERDGGEYLCRATNFI 205
Score = 56.5 bits (136), Expect = 7e-09
Identities = 17/107 (15%), Positives = 29/107 (27%), Gaps = 13/107 (12%)
Query: 190 PYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKED------YVQDRLVANLI 243
P + L +D+ C P +W K D +
Sbjct: 115 ILQAGLPANQTAVLG-----SDVEFHCKVYSDAQPHIQWLKHVEVNGSKVGPDGTPYVTV 169
Query: 244 DPLSDKRFTLSGGNLIINDPRQVEDRGSYHCKASNKFGSIISESVQL 290
+ L + + D G Y C+A+N G ++ L
Sbjct: 170 LKSWISESVEADVRLRLANV-SERDGGEYLCRATNFIGV-AEKAFWL 214
>3rjd_A High affinity immunoglobulin gamma FC receptor I; immune system;
HET: NAG MAN FUC P33; 2.65A {Homo sapiens}
Length = 262
Score = 141 bits (358), Expect = 6e-38
Identities = 47/266 (17%), Positives = 80/266 (30%), Gaps = 38/266 (14%)
Query: 414 GDKVRLECVAFGYPVP-SYNWTRRGSPLPRNAYFENFNRILTIPNVKVEDQGEYICRASN 472
+ V L C P S W G+ + I + V D GEY C+
Sbjct: 16 EETVTLHCEVLHLPGSSSTQWFLNGTATQTS------TPSYRITSASVNDSGEYRCQRGL 69
Query: 473 DRSALESSVTISIQAEPNFTIPLTDKHMDNQADLTWTCEAF-GVPDVTYSWFRNGELLNS 531
S + + I + ++ + L C A+ ++RNG+
Sbjct: 70 --SGRSDPIQLEIHRGW-LLLQVSSRVFTEGEPLALRCHAWKDKLVYNVLYYRNGKAF-- 124
Query: 532 ETLPLEDQDRYFIQDNVLTIRYLNPERDPAMYQCRAKNQLKTRYSSAQLRVLTL--KPSF 589
++F ++ LTI N Y C + + + + V L P
Sbjct: 125 ---------KFFHWNSNLTILKTNIS-HNGTYHCSGMGKHRYTSAGISVTVKELFPAPVL 174
Query: 590 KKRPLESETYAGEGGNVTIFCNPEAAPKP-----KFVWKKDGNIIGSGGRRKIFENGNLL 644
+ EG VT+ C + + F + + +
Sbjct: 175 NASV---TSPLLEGNLVTLSCETKLLLQRPGLQLYFSFYMGSKTLRGRNT-----SSEYQ 226
Query: 645 ISPVSRDDSGIYSCTATNVHGMDESK 670
I R+DSG+Y C A G +
Sbjct: 227 ILTARREDSGLYWCEAATEDGNVLKR 252
Score = 134 bits (339), Expect = 2e-35
Identities = 42/277 (15%), Positives = 79/277 (28%), Gaps = 39/277 (14%)
Query: 506 LTWTCEAFGVP-DVTYSWFRNGELLNSETLPLEDQDRYFIQDNVLTIRYLNPERDPAMYQ 564
+T CE +P + WF NG + T I + D Y+
Sbjct: 19 VTLHCEVLHLPGSSSTQWFLNGTATQTST-------------PSYRITSASVN-DSGEYR 64
Query: 565 CRAKNQLKTRYSSAQLRVLTLKPSFKKRPLESETYAGEGGNVTIFCNPEA-APKPKFVWK 623
C+ S +++ + + S EG + + C+ ++
Sbjct: 65 CQRGL----SGRSDPIQLEIHRGWLLLQV--SSRVFTEGEPLALRCHAWKDKLVYNVLYY 118
Query: 624 KDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTATNVHGMDESKGRLIVLHGPSY-Y 682
++G N NL I + +G Y C+ H + + V
Sbjct: 119 RNGKAFKFFH-----WNSNLTILKTNISHNGTYHCSGMGKHRYTSAGISVTVKELFPAPV 173
Query: 683 EQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLL 742
+ + L C + G+++ +T
Sbjct: 174 LNASVTSPLLEGNLVTLSCET--------KLLLQRPGLQLYFSFYMGSKTLRGRNTSSEY 225
Query: 743 EITNASFADAGEYECVVKSTVGKI---STKTTVIVEG 776
+I A D+G Y C + G + S + + V G
Sbjct: 226 QILTARREDSGLYWCEAATEDGNVLKRSPELELQVLG 262
Score = 104 bits (260), Expect = 7e-25
Identities = 48/283 (16%), Positives = 79/283 (27%), Gaps = 46/283 (16%)
Query: 212 ITLSCYAGGYP-NPSYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVEDRG 270
+TL C P + S +WF S + I V D G
Sbjct: 19 VTLHCEVLHLPGSSSTQWFLNG----------------TATQTSTPSYRIT-SASVNDSG 61
Query: 271 SYHCKASNKFGSIISESVQLAFGFIGEFNLKRAPEIGNQNWGKAMFCDPPTNYPGVNYYW 330
Y C+ S S+ +QL G L+ + + + A+ C + N +
Sbjct: 62 EYRCQRGL---SGRSDPIQLEI-HRGWLLLQVSSRVFTEGEPLALRCHAWKDKLVYNVLY 117
Query: 331 ARDYFPNFVEEDKRV-FVSYDGALYFSALEQIDAGNYSCNVQSKVSDTGRNGPFFPLKVF 389
R+ K F ++ L G Y C+ K + V
Sbjct: 118 YRN--------GKAFKFFHWNSNLTILKTNISHNGTYHCSGMGKH---RYTSAGISVTV- 165
Query: 390 PHSNFQQLKFPNNFPKTFPEAP-KAGDKVRLECVAFGYPV-PSYNWTRRGSPLPRNAYFE 447
+ FP +P G+ V L C P +
Sbjct: 166 ------KELFPAPVLNASVTSPLLEGNLVTLSCETKLLLQRPGLQLYFSFYMGSKTLRGR 219
Query: 448 NFNRILTIPNVKVEDQGEYICRASNDRSALES---SVTISIQA 487
N + I + ED G Y C A+ + + + + +
Sbjct: 220 NTSSEYQILTARREDSGLYWCEAATEDGNVLKRSPELELQVLG 262
Score = 93.4 bits (232), Expect = 3e-21
Identities = 36/197 (18%), Positives = 56/197 (28%), Gaps = 26/197 (13%)
Query: 586 KPSFKKRPLESETYAGEGGNVTIFCNPEAAPKP-KFVWKKDGNIIGSGGRRKIFENGNLL 644
K +P + E VT+ C P W +G + +
Sbjct: 1 KAVITLQPPWVSVFQEE--TVTLHCEVLHLPGSSSTQWFLNGTATQT-------STPSYR 51
Query: 645 ISPVSRDDSGIYSCTATNVHGMDESKGRLIVLHGPSYYEQLPPKITIAAHRNLQLRCSAH 704
I+ S +DSG Y C D +L + G + L LRC A
Sbjct: 52 ITSASVNDSGEYRCQRGLSGRSDPI--QLEIHRGWLLLQ--VSSRVFTEGEPLALRCHAW 107
Query: 705 TEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEITNASFADAGEYECVVKSTVG 764
++L+ ++ NG L I + + G Y C
Sbjct: 108 KDKLV-YNVLYYRNGKAFKFFH-----------WNSNLTILKTNISHNGTYHCSGMGKHR 155
Query: 765 KISTKTTVIVEGPPGLP 781
S +V V+ P
Sbjct: 156 YTSAGISVTVKELFPAP 172
Score = 54.2 bits (130), Expect = 5e-08
Identities = 25/199 (12%), Positives = 52/199 (26%), Gaps = 47/199 (23%)
Query: 190 PYFIKQPTDVVFDLSKRSILNDITLSCYA-GGYPNPSYEWFKEDYVQDRLVANLIDPLSD 248
+ + Q + VF + + L C+A + +++
Sbjct: 83 GWLLLQVSSRVFTEGE-----PLALRCHAWKDKLVYNVLYYRNG--------------KA 123
Query: 249 KRFTLSGGNLIINDPRQVEDRGSYHCKASNKFGSIISESVQLAFGFIGEFNLKRAPEIGN 308
+F NL I + G+YHC K S + + L AP +
Sbjct: 124 FKFFHWNSNLTILKT-NISHNGTYHCSGMGKHRY-TSAGISVTV-----KELFPAPVLNA 176
Query: 309 QNWGKA-------MFCD----PPTNYPGVNYYWARDYFPNFVEEDKRV-FVSYDGALYFS 356
+ C+ + + + K + +
Sbjct: 177 SVTSPLLEGNLVTLSCETKLLLQRPGLQLYFSFYMG--------SKTLRGRNTSSEYQIL 228
Query: 357 ALEQIDAGNYSCNVQSKVS 375
+ D+G Y C ++
Sbjct: 229 TARREDSGLYWCEAATEDG 247
Score = 52.2 bits (125), Expect = 3e-07
Identities = 19/105 (18%), Positives = 37/105 (35%), Gaps = 18/105 (17%)
Query: 187 PRGPYFIKQPTDVVFDLSKRSILNDITLSCYAGGYP-NPSYEWFKEDYVQDRLVANLIDP 245
P T + + + +TLSC P + + Y+ + +
Sbjct: 169 FPAPVLNASVTSPLLEGN------LVTLSCETKLLLQRPGLQLYFSFYMGSKTL------ 216
Query: 246 LSDKRFTLSGGNLIINDPRQVEDRGSYHCKASNKFGSIISESVQL 290
R + I + ED G Y C+A+ + G+++ S +L
Sbjct: 217 ----RGRNTSSEYQILTA-RREDSGLYWCEAATEDGNVLKRSPEL 256
>3ojm_B Fibroblast growth factor receptor 2; beta trefoil motif,
immunoglobulin-like domain, growth facto factor
receptor, extracellular; 2.10A {Homo sapiens} PDB:
1nun_B* 3oj2_C 2fdb_P 1iil_E 1ev2_E 1e0o_B* 1ii4_E
1djs_A 3ojv_C* 1cvs_C 1fq9_C* 1evt_C
Length = 231
Score = 140 bits (353), Expect = 1e-37
Identities = 42/223 (18%), Positives = 67/223 (30%), Gaps = 27/223 (12%)
Query: 480 SVTISIQAEPNFTIPLTDKHMDNQA----DLTWTCEAFGVPDVTYSWFRNGELLNSETLP 535
S + + P +T + + + + C A G P T W +NG+ E
Sbjct: 7 SENSNNKRAPYWTNTEKMEKRLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQE--H 64
Query: 536 LEDQDRYFIQDNVLTIRYLNPERDPAMYQCRAKNQLKTRYSSAQLRVL----TLKPSFKK 591
+ Q L + + P D Y C +N+ + + L V+
Sbjct: 65 RIGGYKVRNQHWSLIMESVVPS-DKGNYTCVVENEYGSINHTYHLDVVERSRHRPILQAG 123
Query: 592 RPLESETYAGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSG--------------GRRKI 637
P + GG+V C + +P W K GS
Sbjct: 124 LP--ANASTVVGGDVEFVCKVYSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKHSGINS 181
Query: 638 FENGNLLISPVSRDDSGIYSCTATNVHGMDESKGRLIVLHGPS 680
L + V+ D+G Y C +N G L VL
Sbjct: 182 SNAEVLALFNVTEADAGEYICKVSNYIGQANQSAWLTVLPKQQ 224
Score = 123 bits (310), Expect = 7e-32
Identities = 38/199 (19%), Positives = 68/199 (34%), Gaps = 21/199 (10%)
Query: 413 AGDKVRLECVAFGYPVPSYNWTRRGSPLPRNA-----YFENFNRILTIPNVKVEDQGEYI 467
A + V+ C A G P+P+ W + G + N + L + +V D+G Y
Sbjct: 33 AANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYT 92
Query: 468 CRASNDRSALESSVTISIQAEPNFTIPLTDKHMDNQ-----ADLTWTCEAFGVPDVTYSW 522
C N+ ++ + + + L N D+ + C+ + W
Sbjct: 93 CVVENEYGSINHTYHLDVVERSRHRPILQAGLPANASTVVGGDVEFVCKVYSDAQPHIQW 152
Query: 523 FRNGELLNSET-------LPLEDQDRYFIQDN-VLTIRYLNPERDPAMYQCRAKNQLKTR 574
++ E S+ L + + VL + + D Y C+ N +
Sbjct: 153 IKHVEKNGSKYGPDGLPYLKVLKHSGINSSNAEVLALFNVTEA-DAGEYICKVSNYIGQA 211
Query: 575 YSSAQLRVL--TLKPSFKK 591
SA L VL P +K
Sbjct: 212 NQSAWLTVLPKQQAPGREK 230
Score = 123 bits (309), Expect = 9e-32
Identities = 43/217 (19%), Positives = 79/217 (36%), Gaps = 20/217 (9%)
Query: 587 PSFKK--RPLESETYAGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIF----EN 640
P + + + V C P P W K+G R + ++
Sbjct: 16 PYWTNTEKMEKRLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQH 75
Query: 641 GNLLISPVSRDDSGIYSCTATNVHGMDESKGRLIVL----HGPSYYEQLPPKITIAAHRN 696
+L++ V D G Y+C N +G L V+ H P LP + +
Sbjct: 76 WSLIMESVVPSDKGNYTCVVENEYGSINHTYHLDVVERSRHRPILQAGLPANASTVVGGD 135
Query: 697 LQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNE-------LETPNINI-DGGLLEITNAS 748
++ C +++ + W + + G+ + L+ IN + +L + N +
Sbjct: 136 VEFVCKVYSDAQPHI--QWIKHVEKNGSKYGPDGLPYLKVLKHSGINSSNAEVLALFNVT 193
Query: 749 FADAGEYECVVKSTVGKISTKTTVIVEGPPGLPGGVQ 785
ADAGEY C V + +G+ + + V PG +
Sbjct: 194 EADAGEYICKVSNYIGQANQSAWLTVLPKQQAPGREK 230
Score = 80.7 bits (199), Expect = 4e-17
Identities = 29/166 (17%), Positives = 51/166 (30%), Gaps = 31/166 (18%)
Query: 344 RVFVSYDGALYFSALEQIDAGNYSCNVQSKVSDTGRNGPFFPLKVFPHSNFQQLKFPNNF 403
+ +L ++ D GNY+C V+++ G + L V ++ +
Sbjct: 69 YKVRNQHWSLIMESVVPSDKGNYTCVVENEY---GSINHTYHLDV--------VERSRHR 117
Query: 404 PKTFPEAPK-----AGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYFENFNRI------ 452
P P G V C + P W + + +
Sbjct: 118 PILQAGLPANASTVVGGDVEFVCKVYSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKHS 177
Query: 453 ---------LTIPNVKVEDQGEYICRASNDRSALESSVTISIQAEP 489
L + NV D GEYIC+ SN S +++ +
Sbjct: 178 GINSSNAEVLALFNVTEADAGEYICKVSNYIGQANQSAWLTVLPKQ 223
Score = 69.5 bits (170), Expect = 3e-13
Identities = 39/212 (18%), Positives = 65/212 (30%), Gaps = 46/212 (21%)
Query: 190 PYFIK----QPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDP 245
PY+ + + N + C AGG P P+ W K
Sbjct: 16 PYWTNTEKMEKRLHAVPAA-----NTVKFRCPAGGNPMPTMRWLKNG--------KEFKQ 62
Query: 246 ---LSDKRFTLSGGNLIINDPRQVEDRGSYHCKASNKFGSIISESVQLAFGFIGEFNLKR 302
+ + +LI+ D+G+Y C N++GS I+ + L + E + R
Sbjct: 63 EHRIGGYKVRNQHWSLIMESV-VPSDKGNYTCVVENEYGS-INHTYHLD---VVERSRHR 117
Query: 303 APEIGN--QNW-----GKAMF-CDPPTNYPGVNYYWARDYFPNF------------VEED 342
N G F C + + W + N V +
Sbjct: 118 PILQAGLPANASTVVGGDVEFVCK-VYSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKH 176
Query: 343 KRVFVSYDGALYFSALEQIDAGNYSCNVQSKV 374
+ S L + + DAG Y C V + +
Sbjct: 177 SGINSSNAEVLALFNVTEADAGEYICKVSNYI 208
Score = 55.3 bits (133), Expect = 2e-08
Identities = 18/106 (16%), Positives = 29/106 (27%), Gaps = 12/106 (11%)
Query: 190 PYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPL--- 246
P + + D+ C P +W K P
Sbjct: 119 ILQAGLPANASTVVGG-----DVEFVCKVYSDAQPHIQWIKHVEKNGSKYGPDGLPYLKV 173
Query: 247 --SDKRFTLSGGNLIINDPRQVEDRGSYHCKASNKFGSIISESVQL 290
+ + L + + + D G Y CK SN G ++S L
Sbjct: 174 LKHSGINSSNAEVLALFNVTE-ADAGEYICKVSNYIGQ-ANQSAWL 217
>2va4_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; transmembrane,
phosphorylation, immunoglobulin domain, membrane,
glycoprotein; HET: NAG; 1.9A {Homo sapiens} PDB: 2xy1_A*
Length = 192
Score = 138 bits (349), Expect = 2e-37
Identities = 41/190 (21%), Positives = 72/190 (37%), Gaps = 13/190 (6%)
Query: 404 PKTFPEAPK-----AGDKVRLECVAFGYPVPSYNWTRRGSPLPRNA--YFENFNRILTIP 456
+ P+ G+++ C A G P P+ +W R G + N + N LT+
Sbjct: 4 AISMPQKSFNATAERGEEMTFSCRASGSPEPAISWFRNGKLIEENEKYILKGSNTELTVR 63
Query: 457 NVKVEDQGEYICRASNDRSALESSVTISIQAEPNFTIPLTDKHMDNQADLTWTCEAFGVP 516
N+ D G Y+CRA+N E + + +P+ + +N +T C+A G P
Sbjct: 64 NIINSDGGPYVCRATNKAGEDEKQAFLQVFVQPHIIQLKNETTYENG-QVTLVCDAEGEP 122
Query: 517 DVTYSWFRNGELLNSETLPLEDQDRYFIQDN----VLTIRYLNPERDPAMYQCRAKNQLK 572
+W R + R ++ L I+ + D Y C A +++
Sbjct: 123 IPEITWKRAVDGFTFTEGDKSLDGRIEVKGQHGSSSLHIKDVKLS-DSGRYDCEAASRIG 181
Query: 573 TRYSSAQLRV 582
S L +
Sbjct: 182 GHQKSMYLDI 191
Score = 136 bits (344), Expect = 7e-37
Identities = 41/194 (21%), Positives = 70/194 (36%), Gaps = 9/194 (4%)
Query: 587 PSFKKRPLESETYAGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFE-NGNLLI 645
P+ A G +T C +P+P W ++G +I + + N L +
Sbjct: 3 PAISMPQKSFNATAERGEEMTFSCRASGSPEPAISWFRNGKLIEENEKYILKGSNTELTV 62
Query: 646 SPVSRDDSGIYSCTATNVHGMDESKGRLIVLHGPSYYEQLPPKITIAAHRNLQLRCSAHT 705
+ D G Y C ATN G DE + L V P + T + + L C A
Sbjct: 63 RNIINSDGGPYVCRATNKAGEDEKQAFLQVFVQPHIIQ--LKNETTYENGQVTLVCDAEG 120
Query: 706 EELLDVAYIWTHNGVRIGNMDLNELETPNINI----DGGLLEITNASFADAGEYECVVKS 761
E + ++ W + ++ I + L I + +D+G Y+C S
Sbjct: 121 EPIPEI--TWKRAVDGFTFTEGDKSLDGRIEVKGQHGSSSLHIKDVKLSDSGRYDCEAAS 178
Query: 762 TVGKISTKTTVIVE 775
+G + +E
Sbjct: 179 RIGGHQKSMYLDIE 192
Score = 132 bits (333), Expect = 2e-35
Identities = 51/203 (25%), Positives = 87/203 (42%), Gaps = 26/203 (12%)
Query: 487 AEPNFTIPLTDKHMDNQA--DLTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFI 544
+ P ++P + + ++T++C A G P+ SWFRNG+ +E+ ++Y +
Sbjct: 1 SMPAISMPQKSFNATAERGEEMTFSCRASGSPEPAISWFRNGK-------LIEENEKYIL 53
Query: 545 Q--DNVLTIRYLNPERDPAMYQCRAKNQLKTRYSSAQLRVLTLKPSFKKRPLESETYAGE 602
+ + LT+R + D Y CRA N+ A L+V +P + E
Sbjct: 54 KGSNTELTVRNIINS-DGGPYVCRATNKAGEDEKQAFLQVFV-QPHIIQLK---NETTYE 108
Query: 603 GGNVTIFCNPEAAPKPKFVWKKDGNII-------GSGGRRKIFE---NGNLLISPVSRDD 652
G VT+ C+ E P P+ WK+ + GR ++ + +L I V D
Sbjct: 109 NGQVTLVCDAEGEPIPEITWKRAVDGFTFTEGDKSLDGRIEVKGQHGSSSLHIKDVKLSD 168
Query: 653 SGIYSCTATNVHGMDESKGRLIV 675
SG Y C A + G + L +
Sbjct: 169 SGRYDCEAASRIGGHQKSMYLDI 191
Score = 84.1 bits (208), Expect = 1e-18
Identities = 37/170 (21%), Positives = 59/170 (34%), Gaps = 28/170 (16%)
Query: 330 WARDYFPNFVEEDKRVFVSYDGALYFSALEQIDAGNYSCNVQSKVSDTGRNGPFFPLKVF 389
W R+ E +K + + L + D G Y C +K G + L+VF
Sbjct: 38 WFRNGKL-IEENEKYILKGSNTELTVRNIINSDGGPYVCRATNKA---GEDEKQAFLQVF 93
Query: 390 --PHSNFQQLKFPNNFPKTFPEAPKAGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYF- 446
PH + E +V L C A G P+P W R
Sbjct: 94 VQPH-----------IIQLKNETTYENGQVTLVCDAEGEPIPEITWKRAVDGFTFTEGDK 142
Query: 447 ----------ENFNRILTIPNVKVEDQGEYICRASNDRSALESSVTISIQ 486
++ + L I +VK+ D G Y C A++ + S+ + I+
Sbjct: 143 SLDGRIEVKGQHGSSSLHIKDVKLSDSGRYDCEAASRIGGHQKSMYLDIE 192
Score = 72.5 bits (178), Expect = 1e-14
Identities = 40/201 (19%), Positives = 69/201 (34%), Gaps = 39/201 (19%)
Query: 190 PYFI--KQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLS 247
P ++ + + + ++T SC A G P P+ WF+ LI+
Sbjct: 3 PAISMPQKSFNATAERGE-----EMTFSCRASGSPEPAISWFRNG--------KLIEENE 49
Query: 248 DKRFTLSGGNLIINDPRQVEDRGSYHCKASNKFGSIISE---SVQLAFGFIGEFNLKRAP 304
S L + + D G Y C+A+NK G + V + I N
Sbjct: 50 KYILKGSNTELTVRNIIN-SDGGPYVCRATNKAGEDEKQAFLQVFVQPHIIQLKNETTYE 108
Query: 305 EIGNQNWGKAMF-C----DPPTNYPGVNYYWARD---YFPNFVEEDKRVFVSYD---GAL 353
G+ C +P P + + A D + D R+ V +L
Sbjct: 109 N------GQVTLVCDAEGEPI---PEITWKRAVDGFTFTEGDKSLDGRIEVKGQHGSSSL 159
Query: 354 YFSALEQIDAGNYSCNVQSKV 374
+ ++ D+G Y C S++
Sbjct: 160 HIKDVKLSDSGRYDCEAASRI 180
Score = 64.4 bits (157), Expect = 7e-12
Identities = 26/105 (24%), Positives = 43/105 (40%), Gaps = 15/105 (14%)
Query: 190 PYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDK 249
P+ I+ + ++ +TL C A G P P W + D D D
Sbjct: 96 PHIIQLKNETTYENG------QVTLVCDAEGEPIPEITWKRAV---DGFTFTEGDKSLDG 146
Query: 250 RFTLSG----GNLIINDPRQVEDRGSYHCKASNKFGSIISESVQL 290
R + G +L I D ++ D G Y C+A+++ G +S+ L
Sbjct: 147 RIEVKGQHGSSSLHIKDV-KLSDSGRYDCEAASRIGG-HQKSMYL 189
Score = 57.5 bits (139), Expect = 2e-09
Identities = 19/102 (18%), Positives = 27/102 (26%), Gaps = 17/102 (16%)
Query: 682 YEQLPPKITIAAHRNLQLRCSAH-----TEELLDVAYIWTHNGVRIGNMDLNELETPNIN 736
Q T + C A W NG I E E +
Sbjct: 7 MPQKSFNATAERGEEMTFSCRASGSPEPA-------ISWFRNGKLI-----EENEKYILK 54
Query: 737 IDGGLLEITNASFADAGEYECVVKSTVGKISTKTTVIVEGPP 778
L + N +D G Y C + G+ + + V P
Sbjct: 55 GSNTELTVRNIINSDGGPYVCRATNKAGEDEKQAFLQVFVQP 96
>2yd6_A PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sapiens} PDB:
2yd7_A 2yd2_A 2yd3_A 2yd4_A* 2yd8_A* 2yd5_A* 3pxh_A
Length = 212
Score = 138 bits (348), Expect = 3e-37
Identities = 50/219 (22%), Positives = 76/219 (34%), Gaps = 27/219 (12%)
Query: 484 SIQAEPNFTIPLTDKHMDNQADLTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYF 543
+ + P FT D+ + ++ C+A G P W + G+ + +Q
Sbjct: 2 TGETPPRFTRTPVDQTGVSGGVASFICQATGDPRPKIVWNKKGK-------KVSNQRFEV 54
Query: 544 IQDN-----VLTIRYLNPERDPAMYQCRAKNQLKTRYSSAQLRVLTL------KPSFKKR 592
I+ + VL I+ L RD A+Y+C A N + S +L VL P+
Sbjct: 55 IEFDDGSGSVLRIQPLRTPRDEAIYECVASNNVGEISVSTRLTVLREDQIPRGFPTIDMG 114
Query: 593 PLESETYAGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFE------NGNLLIS 646
P T+ C P P+ W KD + + + G L I
Sbjct: 115 P--QLKVVERTRTATMLCAASGNPDPEITWFKDFLPVDTSNNNGRIKQLRSESIGALQIE 172
Query: 647 PVSRDDSGIYSCTATNVHGMDES-KGRLIVLHGPSYYEQ 684
D G Y C ATN G S L V ++
Sbjct: 173 QSEESDQGKYECVATNSAGTRYSAPANLYVRGTKHHHHH 211
Score = 127 bits (321), Expect = 2e-33
Identities = 49/206 (23%), Positives = 80/206 (38%), Gaps = 18/206 (8%)
Query: 586 KPSFKKRPLESETYAGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKI-FENGN-- 642
P F + P + GG + C P+PK VW K G + + I F++G+
Sbjct: 6 PPRFTRTP--VDQTGVSGGVASFICQATGDPRPKIVWNKKGKKVSNQRFEVIEFDDGSGS 63
Query: 643 -LLISPV-SRDDSGIYSCTATNVHGMDESKGRLIVLHGPSYYEQLPPKI-------TIAA 693
L I P+ + D IY C A+N G RL V + P I +
Sbjct: 64 VLRIQPLRTPRDEAIYECVASNNVGEISVSTRLTV-LREDQIPRGFPTIDMGPQLKVVER 122
Query: 694 HRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEITNASFADAG 753
R + C+A ++ W + + + + N + G L+I + +D G
Sbjct: 123 TRTATMLCAASGNPDPEI--TWFKDFLPVDTSNNNGRIKQLRSESIGALQIEQSEESDQG 180
Query: 754 EYECVVKSTVG-KISTKTTVIVEGPP 778
+YECV ++ G + S + V G
Sbjct: 181 KYECVATNSAGTRYSAPANLYVRGTK 206
Score = 117 bits (296), Expect = 4e-30
Identities = 43/188 (22%), Positives = 68/188 (36%), Gaps = 15/188 (7%)
Query: 414 GDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYF-----ENFNRILTIPNVKV-EDQGEYI 467
G C A G P P W ++G + + + +L I ++ D+ Y
Sbjct: 21 GGVASFICQATGDPRPKIVWNKKGKKVSNQRFEVIEFDDGSGSVLRIQPLRTPRDEAIYE 80
Query: 468 CRASNDRSALESSVTISIQAE-------PNFTIPLTDKHMDNQADLTWTCEAFGVPDVTY 520
C ASN+ + S +++ E P + K ++ T C A G PD
Sbjct: 81 CVASNNVGEISVSTRLTVLREDQIPRGFPTIDMGPQLKVVERTRTATMLCAASGNPDPEI 140
Query: 521 SWFRNGELLNSETLPLEDQDRYFIQDNVLTIRYLNPERDPAMYQCRAKNQLKTRYS-SAQ 579
+WF++ +++ + L I D Y+C A N TRYS A
Sbjct: 141 TWFKDFLPVDTSNNNGRIKQLRSESIGALQIEQSEES-DQGKYECVATNSAGTRYSAPAN 199
Query: 580 LRVLTLKP 587
L V K
Sbjct: 200 LYVRGTKH 207
Score = 79.5 bits (196), Expect = 8e-17
Identities = 30/170 (17%), Positives = 53/170 (31%), Gaps = 26/170 (15%)
Query: 340 EEDKRVFVSYDGALYFSALEQI----DAGNYSCNVQSKVSDTGRNGPFFPLKVFPHSNFQ 395
+ V DG+ ++ + D Y C + V G L V
Sbjct: 49 NQRFEVIEFDDGSGSVLRIQPLRTPRDEAIYECVASNNV---GEISVSTRLTVLRED--- 102
Query: 396 QLKFPNNFPKTFPEAPK-----AGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYFENFN 450
+ P FP P+ + C A G P P W + P+ +
Sbjct: 103 --QIPRGFPT-IDMGPQLKVVERTRTATMLCAASGNPDPEITWFKDFLPVDTSNNNGRIK 159
Query: 451 RI-------LTIPNVKVEDQGEYICRASNDR-SALESSVTISIQAEPNFT 492
++ L I + DQG+Y C A+N + + + ++ +
Sbjct: 160 QLRSESIGALQIEQSEESDQGKYECVATNSAGTRYSAPANLYVRGTKHHH 209
Score = 73.3 bits (180), Expect = 8e-15
Identities = 48/212 (22%), Positives = 64/212 (30%), Gaps = 55/212 (25%)
Query: 190 PYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDK 249
P F + P D + C A G P P W K+ +S++
Sbjct: 7 PRFTRTPVDQTGVSGG-----VASFICQATGDPRPKIVWNKKG-----------KKVSNQ 50
Query: 250 RFTL------SGGNLIINDPRQVEDRGSYHCKASNKFGSIISESVQLAFGFIGEFNLKRA 303
RF + SG L I R D Y C ASN G IS S +L + R
Sbjct: 51 RFEVIEFDDGSGSVLRIQPLRTPRDEAIYECVASNNVGE-ISVSTRL--------TVLRE 101
Query: 304 PEIGNQNWGKAMFCDPPTN-----------------YPGVNYYWARDYFP----NFVEED 342
+I G P P W +D+ P N
Sbjct: 102 DQIPR---GFPTIDMGPQLKVVERTRTATMLCAASGNPDPEITWFKDFLPVDTSNNNGRI 158
Query: 343 KRVFVSYDGALYFSALEQIDAGNYSCNVQSKV 374
K++ GAL E+ D G Y C +
Sbjct: 159 KQLRSESIGALQIEQSEESDQGKYECVATNSA 190
Score = 71.0 bits (174), Expect = 5e-14
Identities = 25/111 (22%), Positives = 41/111 (36%), Gaps = 9/111 (8%)
Query: 180 IENPDKIPRGPYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLV 239
+ P P V + ++ T+ C A G P+P WFK+ +
Sbjct: 99 LREDQIPRGFPTIDMGPQLKVVERTR-----TATMLCAASGNPDPEITWFKDF---LPVD 150
Query: 240 ANLIDPLSDKRFTLSGGNLIINDPRQVEDRGSYHCKASNKFGSIISESVQL 290
+ + + + S G L I + D+G Y C A+N G+ S L
Sbjct: 151 TSNNNGRIKQLRSESIGALQIEQSEE-SDQGKYECVATNSAGTRYSAPANL 200
Score = 52.5 bits (126), Expect = 1e-07
Identities = 24/115 (20%), Positives = 44/115 (38%), Gaps = 5/115 (4%)
Query: 684 QLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLE 743
+ P T + C A + + +W G ++ N +E + + G +L
Sbjct: 11 RTPVDQTGVSGGVASFICQATGDPRPKI--VWNKKGKKVSNQRFEVIEFDDGS--GSVLR 66
Query: 744 ITNASFA-DAGEYECVVKSTVGKISTKTTVIVEGPPGLPGGVQVVEVHKTSATIQ 797
I D YECV + VG+IS T + V +P G +++ ++
Sbjct: 67 IQPLRTPRDEAIYECVASNNVGEISVSTRLTVLREDQIPRGFPTIDMGPQLKVVE 121
>1epf_A NCAM, protein (neural cell adhesion molecule); immunoglobulin fold,
glycoprotein; 1.85A {Rattus norvegicus} SCOP: b.1.1.4
b.1.1.4 PDB: 2ncm_A 3ncm_A
Length = 191
Score = 136 bits (345), Expect = 5e-37
Identities = 44/198 (22%), Positives = 75/198 (37%), Gaps = 20/198 (10%)
Query: 489 PNFTIPLTDKHMDNQADLTWTCEAFGVP-DVTYSWFR-NGELLNSETLPLEDQDRYFIQD 546
I + + + C+ G D SWF NGE L+ +Q R +
Sbjct: 3 LQVDIVPSQGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSP------NQQRISVVW 56
Query: 547 N-----VLTIRYLNPERDPAMYQCRAKNQLKTRYS-SAQLRVLTLKPSFKKRPLESETYA 600
N LTI N + D +Y+C + T+ + +++ K FK P +
Sbjct: 57 NDDDSSTLTIYNANID-DAGIYKCVVTAEDGTQSEATVNVKIFQ-KLMFKNAP--TPQEF 112
Query: 601 GEGGNVTIFCNPEAAPKPKFVWKKDGN--IIGSGGRRKIFENGNLLISPVSRDDSGIYSC 658
EG + I C+ ++ P +WK G I+ R + N L I + + D G Y C
Sbjct: 113 KEGEDAVIVCDVVSSLPPTIIWKHKGRDVILKKDVRFIVLSNNYLQIRGIKKTDEGTYRC 172
Query: 659 TATNVHGMDESKGRLIVL 676
+ + + + V+
Sbjct: 173 EGRILARGEINFKDIQVI 190
Score = 123 bits (310), Expect = 2e-32
Identities = 35/181 (19%), Positives = 64/181 (35%), Gaps = 16/181 (8%)
Query: 413 AGDKVRLECVAFGYP-VPSYNWTRR-GSPLPRN------AYFENFNRILTIPNVKVEDQG 464
G+ C G +W G L N + ++ + LTI N ++D G
Sbjct: 16 VGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDDSSTLTIYNANIDDAG 75
Query: 465 EYICRASNDR-SALESSVTISIQAEPNFTIPLTDKHMDNQADLTWTCEAFGVPDVTYSWF 523
Y C + + + E++V + I + F T + D C+ T W
Sbjct: 76 IYKCVVTAEDGTQSEATVNVKIFQKLMFKNAPTPQEFKEGEDAVIVCDVVSSLPPTIIWK 135
Query: 524 RNGELLNSETLPLEDQDRYFIQDN-VLTIRYLNPERDPAMYQCRAKNQLKTRYSSAQLRV 582
G + L+ R+ + N L IR + D Y+C + + + ++V
Sbjct: 136 HKG-----RDVILKKDVRFIVLSNNYLQIRGIKKT-DEGTYRCEGRILARGEINFKDIQV 189
Query: 583 L 583
+
Sbjct: 190 I 190
Score = 111 bits (279), Expect = 4e-28
Identities = 31/199 (15%), Positives = 56/199 (28%), Gaps = 21/199 (10%)
Query: 587 PSFKKRPLESETYAGEGGNVTIFCNPEAAPKPKFV-WKKDGN--IIGSGGRRKI----FE 639
P S+ G + C K K + W + + R + +
Sbjct: 3 LQVDIVP--SQGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDD 60
Query: 640 NGNLLISPVSRDDSGIYSCTATNVHGMDESKGRLIVLHGPSYYEQLPPKITIAAHRNLQL 699
+ L I + DD+GIY C T G + + ++ P + +
Sbjct: 61 SSTLTIYNANIDDAGIYKCVVTAEDGTQSEATVNVKIFQKLMFKNAPTPQEFKEGEDAVI 120
Query: 700 RCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINI---DGGLLEITNASFADAGEYE 756
C + + IW H G + + ++ L+I D G Y
Sbjct: 121 VCDVVSSLPPTI--IWKHKGRDV-------ILKKDVRFIVLSNNYLQIRGIKKTDEGTYR 171
Query: 757 CVVKSTVGKISTKTTVIVE 775
C + + V
Sbjct: 172 CEGRILARGEINFKDIQVI 190
Score = 85.6 bits (212), Expect = 3e-19
Identities = 31/177 (17%), Positives = 52/177 (29%), Gaps = 17/177 (9%)
Query: 317 CDPPTNYPGVNYYWARDYFPNFVEEDKRVFVSY----DGALYFSALEQIDAGNYSCNVQS 372
C + + W +R+ V + L DAG Y C V +
Sbjct: 24 CQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDDSSTLTIYNANIDDAGIYKCVVTA 83
Query: 373 KVSDTGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPEAPKAGDKVRLECVAFGYPVPSYN 432
+ +K+F F+ P + F E G+ + C P+
Sbjct: 84 EDGTQSEA--TVNVKIFQKLMFKNA--PTP--QEFKE----GEDAVIVCDVVSSLPPTII 133
Query: 433 WTRRGSPLPRNA---YFENFNRILTIPNVKVEDQGEYICRASNDRSALESSVTISIQ 486
W +G + + N L I +K D+G Y C + I +
Sbjct: 134 WKHKGRDVILKKDVRFIVLSNNYLQIRGIKKTDEGTYRCEGRILARGEINFKDIQVI 190
Score = 82.2 bits (203), Expect = 5e-18
Identities = 29/202 (14%), Positives = 59/202 (29%), Gaps = 37/202 (18%)
Query: 188 RGPYFIKQPTDVVFDLSKRSILNDITLSCYAGGYP-NPSYEWFKEDYVQDRLVANLIDPL 246
R P+ + + C G + WF +
Sbjct: 1 RVLQVDIVPSQGEISVGE-----SKFFLCQVAGDAKDKDISWFSPN--------GEKLSP 47
Query: 247 SDKRFTL-----SGGNLIINDPRQVEDRGSYHCKASNKFGSIISESVQLAFGFIGEFNLK 301
+ +R ++ L I + ++D G Y C + + G+ +V + +
Sbjct: 48 NQQRISVVWNDDDSSTLTIYNA-NIDDAGIYKCVVTAEDGTQSEATVNV--------KIF 98
Query: 302 RAPEIGNQ------NWGK-AMF-CDPPTNYPGVNYYWARDYFPNFVEEDKRVFVSYDGAL 353
+ N G+ A+ CD + W +++D R V + L
Sbjct: 99 QKLMFKNAPTPQEFKEGEDAVIVCD-VVSSLPPTIIWKHKGRDVILKKDVRFIVLSNNYL 157
Query: 354 YFSALEQIDAGNYSCNVQSKVS 375
+++ D G Y C +
Sbjct: 158 QIRGIKKTDEGTYRCEGRILAR 179
Score = 66.8 bits (163), Expect = 1e-12
Identities = 20/98 (20%), Positives = 29/98 (29%), Gaps = 15/98 (15%)
Query: 190 PYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDK 249
F PT F + D + C P+ W + + D
Sbjct: 101 LMFKNAPTPQEFKEGE-----DAVIVCDVVSSLPPTIIWKHKG--------RDVILKKDV 147
Query: 250 RFT-LSGGNLIINDPRQVEDRGSYHCKASNKFGSIISE 286
RF LS L I + D G+Y C+ I+
Sbjct: 148 RFIVLSNNYLQIRGI-KKTDEGTYRCEGRILARGEINF 184
>1itb_B Type 1 interleukin-1 receptor; immunoglobulin fold, transmembrane,
glycoprotein, signal, complex (immunoglobulin/receptor);
2.50A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB:
1ira_Y* 4dep_B* 1g0y_R
Length = 315
Score = 141 bits (355), Expect = 6e-37
Identities = 52/301 (17%), Positives = 89/301 (29%), Gaps = 45/301 (14%)
Query: 413 AGDKVRLECVAFGYPVP-SYNWTRRGSPLP----RNAYFENFNRILTIPNVKVEDQGEYI 467
A + C + W + S P + + L KVED G Y
Sbjct: 19 ANEIDVRPCPLNPNEHKGTITWYKDDSKTPVSTEQASRIHQHKEKLWFVPAKVEDSGHYY 78
Query: 468 CRASNDRSALESSVTISI-QAEPNFTIPLTDK-----HMDNQADLT----WTCEAFGVPD 517
C N L ++ + EPN + L +
Sbjct: 79 CVVRNSSYCLRIKISAKFVENEPNLCYNAQAIFKQKLPVAGDGGLVCPYMEFFKNENNEL 138
Query: 518 VTYSWFRNGELLNSETLPLEDQDRYFIQDNVLTIRYLNPERDPAMYQCRAKNQL--KTRY 575
W+++ + L D + + L + + + Y C A K
Sbjct: 139 PKLQWYKDCKPLL------LDNIHFSGVKDRLIVMNVAEK-HRGNYTCHASYTYLGKQYP 191
Query: 576 SSAQLRVLTLKPSFKKRP-----LESETYAGEGGNVTIFCNPEAAPKPKFVWKKDGNIIG 630
+ + +TL+ + RP G + + CN WK +G++I
Sbjct: 192 ITRVIEFITLEENKPTRPVIVSPANETMEVDLGSQIQLICNVTGQLSDIAYWKWNGSVID 251
Query: 631 S---------------GGRRKIFENGNLLISPV-SRDDSGIYSCTATNVHGMDESKGRLI 674
+R+ L IS + SR ++C A N HG+D + +LI
Sbjct: 252 EDDPVLGEDYYSVENPANKRRSTLITVLNISEIESRFYKHPFTCFAKNTHGIDAAYIQLI 311
Query: 675 V 675
Sbjct: 312 Y 312
Score = 138 bits (348), Expect = 4e-36
Identities = 47/296 (15%), Positives = 81/296 (27%), Gaps = 33/296 (11%)
Query: 506 LTWTCEAFGVPD-VTYSWFRNGELLNSETLPLEDQDRYFIQDNVLTIRYLNPERDPAMYQ 564
C T +W+++ + E R L E D Y
Sbjct: 23 DVRPCPLNPNEHKGTITWYKDDSKTP---VSTEQASRIHQHKEKLWFVPAKVE-DSGHYY 78
Query: 565 CRAKNQLKTRYSSAQLRVLTLKPSFKK-RPLESETYAGEGGNVTIFCN------PEAAPK 617
C +N + + +P+ + G+ + C E
Sbjct: 79 CVVRNSSYCLRIKISAKFVENEPNLCYNAQAIFKQKLPVAGDGGLVCPYMEFFKNENNEL 138
Query: 618 PKFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTATNVHGMDE-SKGRLIVL 676
PK W KD + L++ V+ G Y+C A+ + + R+I
Sbjct: 139 PKLQWYKDCKPLLLDNIHFSGVKDRLIVMNVAEKHRGNYTCHASYTYLGKQYPITRVIEF 198
Query: 677 HGPSYYEQLPPKITIAAHR--------NLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLN 728
+ P I A+ +QL C+ + W NG I D
Sbjct: 199 ITLEENKPTRPVIVSPANETMEVDLGSQIQLICNVTGQLSDIA--YWKWNGSVIDEDDPV 256
Query: 729 ELE---------TPNINIDGGLLEITNASFAD-AGEYECVVKSTVGKISTKTTVIV 774
E + +L I+ + C K+T G + +I
Sbjct: 257 LGEDYYSVENPANKRRSTLITVLNISEIESRFYKHPFTCFAKNTHGIDAAYIQLIY 312
Score = 105 bits (262), Expect = 9e-25
Identities = 43/310 (13%), Positives = 80/310 (25%), Gaps = 64/310 (20%)
Query: 213 TLSCYAGGYPNP-SYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVEDRGS 271
C + + W+K+D + R L + VED G
Sbjct: 24 VRPCPLNPNEHKGTITWYKDD------SKTPVSTEQASRIHQHKEKLWFVPAK-VEDSGH 76
Query: 272 YHCKASNKFGSIISESVQL-------AFGFIGEFNLKRAPEIGNQNW--GKAMFCDPPTN 322
Y+C N + + + + K+ + M N
Sbjct: 77 YYCVVRNSSYCL-RIKISAKFVENEPNLCYNAQAIFKQKLPVAGDGGLVCPYMEFFKNEN 135
Query: 323 YPGVNYYWARDYFPNFVEEDKRVFVSYDGALYFSALEQIDAGNYSCNVQS---------- 372
W +D P + D F L + + GNY+C+
Sbjct: 136 NELPKLQWYKDCKP--LLLDNIHFSGVKDRLIVMNVAEKHRGNYTCHASYTYLGKQYPIT 193
Query: 373 ---KVSDTGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPEAPKAGDKVRLECVAFGYPVP 429
+ N P P+ V P + ++ G +++L C G
Sbjct: 194 RVIEFITLEENKPTRPVIVSPANETMEV--------------DLGSQIQLICNVTGQLSD 239
Query: 430 SYNWTRRGSPLPRNAYFENFNR----------------ILTIPNVKVED-QGEYICRASN 472
W GS + + + +L I ++ + + C A N
Sbjct: 240 IAYWKWNGSVIDEDDPVLGEDYYSVENPANKRRSTLITVLNISEIESRFYKHPFTCFAKN 299
Query: 473 DRSALESSVT 482
+ +
Sbjct: 300 THGIDAAYIQ 309
Score = 103 bits (257), Expect = 4e-24
Identities = 46/316 (14%), Positives = 76/316 (24%), Gaps = 50/316 (15%)
Query: 587 PSFKKRPLESETYAGEGGNVTIFCNPEAAP-KPKFVWKKDGN---IIGSGGRRKIFENGN 642
K+R + + C K W KD + + R
Sbjct: 4 DKCKEREEKIILVSSANEIDVRPCPLNPNEHKGTITWYKDDSKTPVSTEQASRIHQHKEK 63
Query: 643 LLISPVSRDDSGIYSCTATNVHGMDESKGRLIVLHGPS---YYEQLPPKITIAAHRNLQL 699
L P +DSG Y C N K + Y Q K + + L
Sbjct: 64 LWFVPAKVEDSGHYYCVVRNSSYCLRIKISAKFVENEPNLCYNAQAIFKQKLPVAGDGGL 123
Query: 700 RCSAHTEELLD---VAYI-WTHNGVRIGNMDLNELETPNINIDGGLLEITNASFADAGEY 755
C + + + W + + L+ + + L + N + G Y
Sbjct: 124 VCPYMEFFKNENNELPKLQWYKDCKPL------LLDNIHFSGVKDRLIVMNVAEKHRGNY 177
Query: 756 ECVVKSTVGKISTKTTVIVE---------GPPGL---PGGVQVVEVHKT----------- 792
C T T ++E P + V++
Sbjct: 178 TCHASYTYLGKQYPITRVIEFITLEENKPTRPVIVSPANETMEVDLGSQIQLICNVTGQL 237
Query: 793 SATIQWTDGATNGRPITHYKIIARTNWNSTWFNVSEHVIGKEVDRYTGRKEASIENVLVP 852
S W NG I + + R T +I +
Sbjct: 238 SDIAYWKW---NGSVI-------DEDDPVLGEDYYSVENPANKRRSTLITVLNISEIESR 287
Query: 853 WSTYEFKVIAGNELGY 868
+ + F A N G
Sbjct: 288 FYKHPFTCFAKNTHGI 303
Score = 51.6 bits (123), Expect = 5e-07
Identities = 22/152 (14%), Positives = 41/152 (26%), Gaps = 19/152 (12%)
Query: 156 ICEASIQKLHYLLNDDRTYQYGMDIENPDKIPRGPYFIKQPTDVVFDLSKRSILN-DITL 214
C N + + + + P Y + ++ L
Sbjct: 78 YCVVR--------NSSYCLRIKISAKFVENEPNLCYNAQAIFKQKLPVAGDGGLVCPYME 129
Query: 215 SCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVEDRGSYHC 274
P +W+K+ L + F+ LI+ + + RG+Y C
Sbjct: 130 FFKNENNELPKLQWYKDCKPL---------LLDNIHFSGVKDRLIVMNV-AEKHRGNYTC 179
Query: 275 KASNKFGSIISESVQLAFGFIGEFNLKRAPEI 306
AS + ++ E N P I
Sbjct: 180 HASYTYLGKQYPITRVIEFITLEENKPTRPVI 211
Score = 47.8 bits (113), Expect = 9e-06
Identities = 17/86 (19%), Positives = 29/86 (33%), Gaps = 7/86 (8%)
Query: 211 DITLSCYAGGYPNPSYEWFK------EDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPR 264
I L C G + W ED ++ ++KR + L I++
Sbjct: 226 QIQLICNVTGQLSDIAYWKWNGSVIDEDDPVLGEDYYSVENPANKRRSTLITVLNISEIE 285
Query: 265 QVEDRGSYHCKASNKFGSIISESVQL 290
+ + C A N G + +QL
Sbjct: 286 SRFYKHPFTCFAKNTHGI-DAAYIQL 310
>2wv3_A Neuroplastin; igcam, membrane, glycoprotein, cell membrane, cell
adhesion, transmembrane, disulfide bond, alternative
splicing; HET: NAG; 1.95A {Rattus norvegicus}
Length = 190
Score = 135 bits (341), Expect = 2e-36
Identities = 42/177 (23%), Positives = 67/177 (37%), Gaps = 10/177 (5%)
Query: 412 KAGDKVRLECVAFGYPVP--SYNWTRRGSPLPRNAYFENFNRILTIPNVKVEDQGEYICR 469
+ V L+C WT+ G L + N I + ED GEY C
Sbjct: 16 DSLLPVTLQCNLTSSSHTLMYSYWTKNGVELTATRKNAS-NMEYRINKPRAEDSGEYHCV 74
Query: 470 ASNDRSALESSVTISIQAEPNFTIPLTDKHMDNQADLTWTCEAFGVPDVTYSWFRNGELL 529
+ +++ TI ++A P+ T ++ + D C++ G P + W + +
Sbjct: 75 YHFVSAP-KANATIEVKAAPDITGHKRSENKNEGQDAMMYCKSVGYPHPEWMWRKKENGV 133
Query: 530 NSETLPLEDQDRYFIQDN----VLTIRYLNPERDPAMYQCRAKNQLKTRYSSAQLRV 582
E R+FI + L I L DP Y+C A N + + S LRV
Sbjct: 134 FEE--ISNSSGRFFIINKENYTELNIVNLQITEDPGEYECNATNSIGSASVSTVLRV 188
Score = 124 bits (312), Expect = 1e-32
Identities = 44/201 (21%), Positives = 64/201 (31%), Gaps = 24/201 (11%)
Query: 486 QAEPNFTIPLTDKHMDNQADLTWTCEAFG--VPDVTYSWFRNGELLNSETLPLEDQDRYF 543
Q EP D+ +T C + W +NG L R
Sbjct: 1 QNEPRIVTSEEVIIRDSLLPVTLQCNLTSSSHTLMYSYWTKNGVEL--------TATRKN 52
Query: 544 IQDNVLTIRYLNPERDPAMYQCRAKNQLKTRYSSAQLRVLTLKPSFKKRPLESETYAGEG 603
+ I E D Y C + + ++A + V P EG
Sbjct: 53 ASNMEYRINKPRAE-DSGEYHCVY-HFVSAPKANATIEVKA-APDITGHK--RSENKNEG 107
Query: 604 GNVTIFCNPEAAPKPKFVWKKDGNII-----GSGGRRKIFENGN---LLISPVS-RDDSG 654
+ ++C P P+++W+K N + S GR I N L I + +D G
Sbjct: 108 QDAMMYCKSVGYPHPEWMWRKKENGVFEEISNSSGRFFIINKENYTELNIVNLQITEDPG 167
Query: 655 IYSCTATNVHGMDESKGRLIV 675
Y C ATN G L V
Sbjct: 168 EYECNATNSIGSASVSTVLRV 188
Score = 108 bits (271), Expect = 5e-27
Identities = 36/194 (18%), Positives = 59/194 (30%), Gaps = 13/194 (6%)
Query: 586 KPSFKKRPLESETYAGEGGNVTIFCNPEAAPKPK--FVWKKDGNIIGSGGRRKIFENGNL 643
+P VT+ CN ++ W K+G + + RK N
Sbjct: 3 EPRIVTSE--EVIIRDSLLPVTLQCNLTSSSHTLMYSYWTKNGVELTAT--RKNASNMEY 58
Query: 644 LISPVSRDDSGIYSCTATNVHGMDESKGRLIVLHGPSYYEQLPPKITIAAHRNLQLRCSA 703
I+ +DSG Y C V ++ + V ++ + C +
Sbjct: 59 RINKPRAEDSGEYHCVYHFV-SAPKANATIEV-KAAPDITGHKRSENKNEGQDAMMYCKS 116
Query: 704 HTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGL--LEITNASFA-DAGEYECVVK 760
+ +W + N I L I N D GEYEC
Sbjct: 117 VGYPHPEW--MWRKKENGVFEEISNSSGRFFIINKENYTELNIVNLQITEDPGEYECNAT 174
Query: 761 STVGKISTKTTVIV 774
+++G S T + V
Sbjct: 175 NSIGSASVSTVLRV 188
Score = 76.4 bits (188), Expect = 5e-16
Identities = 28/180 (15%), Positives = 59/180 (32%), Gaps = 40/180 (22%)
Query: 324 PGVNYYWARDYFPNFVEEDKRVFVSYDGALYFSALEQIDAGNYSC--NVQSKVSDTGRNG 381
+ YW ++ + ++ + + + D+G Y C + S
Sbjct: 33 TLMYSYWTKNGVE--LTATRKN--ASNMEYRINKPRAEDSGEYHCVYHFVSAPKANAT-- 86
Query: 382 PFFPLKVFPHSNFQQLKFPNNFPKTFPEAPK-----AGDKVRLECVAFGYPVPSYNWTRR 436
++V + G + C + GYP P + W ++
Sbjct: 87 ----IEV-------------KAAPDITGHKRSENKNEGQDAMMYCKSVGYPHPEWMWRKK 129
Query: 437 GSPLP-----RNAYF----ENFNRILTIPNVKV-EDQGEYICRASNDRSALESSVTISIQ 486
+ + + F + L I N+++ ED GEY C A+N + S + ++
Sbjct: 130 ENGVFEEISNSSGRFFIINKENYTELNIVNLQITEDPGEYECNATNSIGSASVSTVLRVR 189
Score = 70.6 bits (173), Expect = 4e-14
Identities = 28/104 (26%), Positives = 42/104 (40%), Gaps = 13/104 (12%)
Query: 190 PYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDK 249
P + + D + C + GYP+P + W K++ V I S +
Sbjct: 93 PDITGHKRSENKNEGQ-----DAMMYCKSVGYPHPEWMWRKKE----NGVFEEISNSSGR 143
Query: 250 RFTLSGGN---LIINDPRQVEDRGSYHCKASNKFGSIISESVQL 290
F ++ N L I + + ED G Y C A+N GS S S L
Sbjct: 144 FFIINKENYTELNIVNLQITEDPGEYECNATNSIGS-ASVSTVL 186
Score = 64.1 bits (156), Expect = 9e-12
Identities = 43/202 (21%), Positives = 62/202 (30%), Gaps = 45/202 (22%)
Query: 190 PYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNP--SYEWFKEDYVQDRLVANLIDPLS 247
P + ++ D +TL C + W K L+
Sbjct: 4 PRIVTSEEVIIRDSLL-----PVTLQCNLTSSSHTLMYSYWTKNG-----------VELT 47
Query: 248 DKRFTLSGGNLIINDPRQVEDRGSYHCKASNKFGSIISESVQLAFGFIGEFNLKRAPEIG 307
R S IN PR ED G YHC S + + +K AP+I
Sbjct: 48 ATRKNASNMEYRINKPRA-EDSGEYHCVYHF--VSAPKANATI--------EVKAAPDIT 96
Query: 308 ------NQNWGK-AMF-CDPPTNYPGVNYYWARDYFPNFVEEDK---RVFVSYDGALYFS 356
N+N G+ AM C YP + W + F E R F+
Sbjct: 97 GHKRSENKNEGQDAMMYCK-SVGYPHPEWMWRKKENGVFEEISNSSGRFFIINKENYTEL 155
Query: 357 ALEQI----DAGNYSCNVQSKV 374
+ + D G Y CN + +
Sbjct: 156 NIVNLQITEDPGEYECNATNSI 177
>3lpw_A A77-A78 domain from titin; intracellular FNIII-tandem, structural
protein; 1.65A {Homo sapiens}
Length = 197
Score = 134 bits (339), Expect = 4e-36
Identities = 42/210 (20%), Positives = 77/210 (36%), Gaps = 33/210 (15%)
Query: 777 PPGLPGGVQVVEVHKTSATIQWTDGA-TNGRPITHYKIIARTNWNSTWFNVSEHVIGKEV 835
PG P ++V EV KTS T+ W G I +Y + R + + V+ +
Sbjct: 5 TPGPPQDLKVKEVTKTSVTLTWDPPLLDGGSKIKNYIVEKRESTRKAYSTVATNC----- 59
Query: 836 DRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPSPQYNTPADKPYQAPSRIGGG 895
+ ++ L +Y F+V+A NE G G P+ + +++P P +I
Sbjct: 60 ----HKTSWKVDQ-LQEGCSYYFRVLAENEYGIGLPAETAESV-KASERP-LPPGKITLM 112
Query: 896 GGKIGDLSISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETLKEYGNVGIAVVRIPSEF 955
+S+SWE P + + Y + + K ++ + +
Sbjct: 113 DVTRNSVSLSWEK-PEHDGGSRILGYIVEMQTKGSDKWAT------------CATVKVTE 159
Query: 956 Y-------YTEYEVKVQAINDVGPGPESEV 978
EY +V A N+ G ++
Sbjct: 160 ATITGLIQGEEYSFRVSAQNEKGISDPRQL 189
Score = 73.5 bits (181), Expect = 6e-15
Identities = 25/107 (23%), Positives = 41/107 (38%), Gaps = 12/107 (11%)
Query: 770 TTVIVEGPPGLPGGVQVVEVHKTSATIQWTD-GATNGRPITHYKIIARTNWNSTWFNVSE 828
+V P PG + +++V + S ++ W G I Y + +T + W +
Sbjct: 95 ESVKASERPLPPGKITLMDVTRNSVSLSWEKPEHDGGSRILGYIVEMQTKGSDKWATCAT 154
Query: 829 HVIGKEVDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPS 875
+V T I L+ Y F+V A NE G +P S
Sbjct: 155 V----KVTEAT------ITG-LIQGEEYSFRVSAQNEKGISDPRQLS 190
>3k0w_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1,
isoform 2; hydrolase, immunoglobulin domain, nucleus,
protease; 2.80A {Homo sapiens}
Length = 218
Score = 135 bits (340), Expect = 4e-36
Identities = 40/206 (19%), Positives = 68/206 (33%), Gaps = 35/206 (16%)
Query: 413 AGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYFENFNRILTIPNVKVEDQGEYICRASN 472
AG V+L C A G+P Y W + +P L V V+D G Y+CR +N
Sbjct: 32 AGQFVKLCCRATGHPFVQYQWFKMNKEIPNGN-----TSELIFNAVHVKDAGFYVCRVNN 86
Query: 473 DR-SALESSVTISIQA---------------EPNFTIPLTDKHMDNQADLTWTCEAFGVP 516
+ + + + + T + + + L C A G P
Sbjct: 87 NFTFEFSQWSQLDVCDIPESFQRSVDGVSESKLQICVEPTSQKLMPGSTLVLQCVAVGSP 146
Query: 517 DVTYSWFRNGELLNSETLPLEDQDRYFIQDNVLTIRYLNPERDPAMYQCRAKNQLKTRYS 576
Y WF+N PL + + + + Y++ E Y C N ++ S
Sbjct: 147 IPHYQWFKNEL-------PLTHETK-----KLYMVPYVDLE-HQGTYWCHVYNDRDSQDS 193
Query: 577 SAQLRVLTLKPSFKKRPLESETYAGE 602
++ + P E +
Sbjct: 194 KKVEIIIDELNNL-GHPDNKEQTTDQ 218
Score = 123 bits (310), Expect = 4e-32
Identities = 37/233 (15%), Positives = 70/233 (30%), Gaps = 37/233 (15%)
Query: 478 ESSVTISIQAEPNFTIPLTDKHMDNQADLTWTCEAFGVPDVTYSWFRNGELLNSETLPLE 537
+ + T+ K + + C A G P V Y WF+ + + +
Sbjct: 8 HHHSSGLVPRGSKITVNPESKAVLAGQFVKLCCRATGHPFVQYQWFKMNKEIPNGN---- 63
Query: 538 DQDRYFIQDNVLTIRYLNPERDPAMYQCRAKNQLKTRYSS-AQLRVLTL----------- 585
+ L ++ + D Y CR N +S +QL V +
Sbjct: 64 --------TSELIFNAVHVK-DAGFYVCRVNNNFTFEFSQWSQLDVCDIPESFQRSVDGV 114
Query: 586 ---KPSFKKRPLESETYAGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGN 642
K P + G + + C +P P + W K+ + ++
Sbjct: 115 SESKLQICVEP--TSQKLMPGSTLVLQCVAVGSPIPHYQWFKNELPLTHETKK------L 166
Query: 643 LLISPVSRDDSGIYSCTATNVHGMDESKGRLIVLHGPSYYEQLPPKITIAAHR 695
++ V + G Y C N +SK I++ + P +
Sbjct: 167 YMVPYVDLEHQGTYWCHVYNDRDSQDSKKVEIIIDELNNLGH-PDNKEQTTDQ 218
Score = 116 bits (293), Expect = 1e-29
Identities = 38/220 (17%), Positives = 63/220 (28%), Gaps = 40/220 (18%)
Query: 587 PSFKKRPLESETYAGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGNLLIS 646
P G V + C P ++ W K I +G L+ +
Sbjct: 19 SKITVNP--ESKAVLAGQFVKLCCRATGHPFVQYQWFKMNKEIPNG------NTSELIFN 70
Query: 647 PVSRDDSGIYSCTATNVHGMDESK-GRLIVLHGPSYYEQL--------------PPKITI 691
V D+G Y C N + S+ +L V P +++ P +
Sbjct: 71 AVHVKDAGFYVCRVNNNFTFEFSQWSQLDVCDIPESFQRSVDGVSESKLQICVEPTSQKL 130
Query: 692 AAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEITNASFAD 751
L L+C A + Y W N + + + L +
Sbjct: 131 MPGSTLVLQCVAVGSPIPH--YQWFKNELPLTHET------------KKLYMVPYVDLEH 176
Query: 752 AGEYECVVKSTVGKI-STKTTVIVEGPPGL--PGGVQVVE 788
G Y C V + S K +I++ L P +
Sbjct: 177 QGTYWCHVYNDRDSQDSKKVEIIIDELNNLGHPDNKEQTT 216
Score = 109 bits (273), Expect = 5e-27
Identities = 50/196 (25%), Positives = 72/196 (36%), Gaps = 35/196 (17%)
Query: 323 YPGVNYYWARDYFPNFVEEDKRVFVSYDGALYFSALEQIDAGNYSCNVQ----SKVSDTG 378
+P V Y W + +K + L F+A+ DAG Y C V + S
Sbjct: 45 HPFVQYQWFKM--------NKEIPNGNTSELIFNAVHVKDAGFYVCRVNNNFTFEFSQWS 96
Query: 379 RNGPFFPLKVF--PHSNFQQLKFPNNFPKTFPEAPK-----AGDKVRLECVAFGYPVPSY 431
+ L V P S + + + P G + L+CVA G P+P Y
Sbjct: 97 Q------LDVCDIPESFQRSVDGVSESKLQICVEPTSQKLMPGSTLVLQCVAVGSPIPHY 150
Query: 432 NWTRRGSPLPRNAYFENFNRILTIPNVKVEDQGEYICRASNDRSALESSVTISIQAEPNF 491
W + PL ++ +P V +E QG Y C NDR + +S I E N
Sbjct: 151 QWFKNELPLTHET-----KKLYMVPYVDLEHQGTYWCHVYNDRDSQDSKKVEIIIDELNN 205
Query: 492 TIPLTDKHMDNQADLT 507
H DN+ T
Sbjct: 206 L-----GHPDNKEQTT 216
Score = 86.9 bits (215), Expect = 2e-19
Identities = 37/206 (17%), Positives = 62/206 (30%), Gaps = 49/206 (23%)
Query: 186 IPRGPYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDP 245
+PRG P + L C A G+P Y+WFK +
Sbjct: 15 VPRGSKITVNPESKAVLAG-----QFVKLCCRATGHPFVQYQWFKMN-----------KE 58
Query: 246 LSDKRFTLSGGNLIINDPRQVEDRGSYHCKASNKFGSIISESVQLAFGFIGEFNLKRAPE 305
+ + LI N V+D G Y C+ +N F S+ QL + +
Sbjct: 59 IPNGN----TSELIFNAV-HVKDAGFYVCRVNNNFTFEFSQWSQL---DVCDIPESFQRS 110
Query: 306 IGNQNWGKAMFCDPPTN-----------------YPGVNYYWARDYFPNFVEEDKRVFVS 348
+ + K C PT+ P +Y W ++ + +
Sbjct: 111 VDGVSESKLQICVEPTSQKLMPGSTLVLQCVAVGSPIPHYQWFKN--------ELPLTHE 162
Query: 349 YDGALYFSALEQIDAGNYSCNVQSKV 374
++ G Y C+V +
Sbjct: 163 TKKLYMVPYVDLEHQGTYWCHVYNDR 188
Score = 62.2 bits (151), Expect = 7e-11
Identities = 22/101 (21%), Positives = 37/101 (36%), Gaps = 21/101 (20%)
Query: 190 PYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDK 249
+PT + L C A G P P Y+WFK + PL+ +
Sbjct: 119 LQICVEPTSQKLMPGS-----TLVLQCVAVGSPIPHYQWFKNE-----------LPLTHE 162
Query: 250 RFTLSGGNLIINDPRQVEDRGSYHCKASNKFGSIISESVQL 290
+ ++ +E +G+Y C N S S+ V++
Sbjct: 163 ----TKKLYMVPYV-DLEHQGTYWCHVYNDRDSQDSKKVEI 198
>2ocw_A Polymeric-immunoglobulin receptor; SC, secretory, antibody,
immunity, immune system; NMR {Homo sapiens} PDB: 3chn_S
3cm9_S 3chn_J 3cm9_J
Length = 585
Score = 143 bits (360), Expect = 1e-35
Identities = 68/451 (15%), Positives = 127/451 (28%), Gaps = 69/451 (15%)
Query: 414 GDKVRLEC---VAFGYPVPSYNWTRRGSPLPRNAYFENFNRI------------------ 452
G+ V + C W R+G+ + +
Sbjct: 15 GNSVSITCYYPPTSVNRHTRKYWCRQGARGGCITLISSEGYVSSKYAGRANLTNFPENGT 74
Query: 453 --LTIPNVKVEDQGEYICRASNDRSALESSVTISIQAEPNFTIPLTDKHMDNQADLTWTC 510
+ I + +D G Y C + L V++ + P +D +T C
Sbjct: 75 FVVNIAQLSQDDSGRYKCGLGINSRGLSFDVSLEVSQGPGLLNDTKVYTVDLGRTVTINC 134
Query: 511 --EAFGVPDVTYSWFRNGELL-----NSETLPLEDQDRYFIQDN-------VLTIRYLNP 556
+ + + G +S + R + + I L
Sbjct: 135 PFKTENAQKRKSLYKQIGLYPVLVIDSSGYVNPNYTGRIRLDIQGTGQLLFSVVINQLRL 194
Query: 557 ERDPAMYQCRAKNQLKTRYSSAQLRVLTLKPSFKKRPLE-----SETYAGEGGNVTIF-C 610
D Y C+A + + +A L+VL +P L E NV F C
Sbjct: 195 S-DAGQYLCQAGDDSNSNKKNADLQVLKPEPELVYEDLRGSVTFHCALGPEVANVAKFLC 253
Query: 611 NPEAAPKPKFVWKKDGNII-GSGGRRKIFENGN-----LLISPVSRDDSGIYSCTATNVH 664
+ V G GR + ++I+ + ++D+G Y C A +
Sbjct: 254 RQSSGENCDVVVNTLGKRAPAFEGRILLNPQDKDGSFSVVITGLRKEDAGRYLCGAHSDG 313
Query: 665 GMDESKGRLIVL---HGPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVR 721
+ E + S + P + A ++ + C + +E + Y W
Sbjct: 314 QLQEGSPIQAWQLFVNEESTIPRSPTVVKGVAGSSVAVLCPYNRKESKSIKY-WCLWEGA 372
Query: 722 IGNMDLNELET---------------PNINIDGGLLEITNASFADAGEYECVVKSTVGKI 766
+++ + + + DAG Y C+
Sbjct: 373 QNGRCPLLVDSEGWVKAQYEGRLSLLEEPGNGTFTVILNQLTSRDAGFYWCLTNGDTLWR 432
Query: 767 STKTTVIVEGPPGLPGGVQVVEVHKTSATIQ 797
+T I+EG P L V V + +
Sbjct: 433 TTVEIKIIEGEPNLKVPGNVTAVLGETLKVP 463
Score = 140 bits (354), Expect = 6e-35
Identities = 76/546 (13%), Positives = 143/546 (26%), Gaps = 91/546 (16%)
Query: 212 ITLSC-YAGGYPNPSYE--WFKEDYVQDRLV---------------ANLIDPLSDKRFTL 253
++++C Y N W ++ + ANL + + F +
Sbjct: 18 VSITCYYPPTSVNRHTRKYWCRQGARGGCITLISSEGYVSSKYAGRANLTNFPENGTFVV 77
Query: 254 SGGNLIINDPRQVEDRGSYHCKASNKFGSIISESVQLAFGFIGEFNLKRAPEIGNQNWGK 313
+ L +D G Y C + S V L +
Sbjct: 78 NIAQL------SQDDSGRYKCGLGINSRGL-SFDVSLEVSQGPGLLNDTKVYTVDLGRTV 130
Query: 314 AMFCDPPTNYPGVNYYWARD---------YFPNFVEEDK----RVFVSYDGALYF----S 356
+ C T + +V + R+ + G L F +
Sbjct: 131 TINCPFKTENAQKRKSLYKQIGLYPVLVIDSSGYVNPNYTGRIRLDIQGTGQLLFSVVIN 190
Query: 357 ALEQIDAGNYSCNVQSKVSDTGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPEAPKAGDK 416
L DAG Y C + +N LK P ++ L+ F P+ +
Sbjct: 191 QLRLSDAGQYLCQAGDDSNSNKKNADLQVLKPEPELVYEDLRGSVTFHCALG--PEVANV 248
Query: 417 VRLECVAFGYPVPSYNWTRRGSPLPRNA-------YFENFNRILTIPNVKVEDQGEYICR 469
+ C G P ++ + + I ++ ED G Y+C
Sbjct: 249 AKFLCRQSSGENCDVVVNTLGKRAPAFEGRILLNPQDKDGSFSVVITGLRKEDAGRYLCG 308
Query: 470 ASNDRSALESSVTIS----IQAEPNFTIPLTDKHMDNQADLTWTCEAFGVPDVTYSWFRN 525
A +D E S + + E T + + C + ++
Sbjct: 309 AHSDGQLQEGSPIQAWQLFVNEESTIPRSPTVVKGVAGSSVAVLCPYNRKESKSIKYWCL 368
Query: 526 GELL----------NSETLPLEDQDRYFIQDN------VLTIRYLNPERDPAMYQCRAKN 569
E + + + + R + + + + L D Y C
Sbjct: 369 WEGAQNGRCPLLVDSEGWVKAQYEGRLSLLEEPGNGTFTVILNQLTSR-DAGFYWCLTNG 427
Query: 570 QLKTRYSSAQLRVLTLKPSFKKRPLESETYAGEGGNVTIFCNPEAA----PKPKFVWKKD 625
R + + + + A G + + C+ K W
Sbjct: 428 DTLWRTT----VEIKIIEGEPNLKVPGNVTAVLGETLKVPCHFPCKFSSYEKYWCKWNNT 483
Query: 626 GNII------GSGGRRKIFENGN----LLISPVSRDDSGIYSCTATNVHGMDES-KGRLI 674
G G + + L ++ V+R D G Y C H E+ +
Sbjct: 484 GCQALPSQDEGPSKAFVNCDENSRLVSLTLNLVTRADEGWYWCGVKQGHFYGETAAVYVA 543
Query: 675 VLHGPS 680
V +
Sbjct: 544 VEERKA 549
Score = 140 bits (352), Expect = 1e-34
Identities = 71/553 (12%), Positives = 145/553 (26%), Gaps = 84/553 (15%)
Query: 318 DPPTNYPGVNYYWARDYFPN----FVEEDKRVFVSYDG-------------ALYFSALEQ 360
P + YW R + + V Y G + + L Q
Sbjct: 25 PPTSVNRHTRKYWCRQGARGGCITLISSEGYVSSKYAGRANLTNFPENGTFVVNIAQLSQ 84
Query: 361 IDAGNYSCNVQSKVSDTGRN---GPFFPLKVFPHSNFQQLKFPNNFPKTFPEAPKAGDKV 417
D+G Y C + + + + + P + K
Sbjct: 85 DDSGRYKCGLGINSRGLSFDVSLEVSQGPGLLNDTKVYTVDLGRTVTINCPFKTENAQKR 144
Query: 418 RLECVAFGYPVPSYNWTRRGSPLPRNAYF-------ENFNRILTIPNVKVEDQGEYICRA 470
+ G + + I +++ D G+Y+C+A
Sbjct: 145 KSLYKQIGLYPVLVIDSSGYVNPNYTGRIRLDIQGTGQLLFSVVINQLRLSDAGQYLCQA 204
Query: 471 SNDRSALESSVTISI--------QAEPNFTIPLTDKHMDNQADLT-WTCEAFGVPDVTYS 521
+D ++ + + + + + ++ A++ + C +
Sbjct: 205 GDDSNSNKKNADLQVLKPEPELVYEDLRGSVTFHCALGPEVANVAKFLCRQSSGENCDVV 264
Query: 522 WFRNGELLNSETLPLEDQDRYFIQDN------VLTIRYLNPERDPAMYQCRAKNQLKTRY 575
G+ + R + + I L E D Y C A + + +
Sbjct: 265 VNTLGKRA------PAFEGRILLNPQDKDGSFSVVITGLRKE-DAGRYLCGAHSDGQLQE 317
Query: 576 SSAQL-RVLTLKPSFKKRPLESETYAGEGGNVTIFCNPEAAPKPKFVW--KKDGNIIGSG 632
S L + + G +V + C + +G G
Sbjct: 318 GSPIQAWQLFVNEESTIPRSPTVVKGVAGSSVAVLCPYNRKESKSIKYWCLWEGAQNGRC 377
Query: 633 ---------------GRRKIFENGN-----LLISPVSRDDSGIYSCTATNVHGMDESKGR 672
GR + E ++++ ++ D+G Y C +
Sbjct: 378 PLLVDSEGWVKAQYEGRLSLLEEPGNGTFTVILNQLTSRDAGFYWCLTNGDTLWRTTVE- 436
Query: 673 LIVLHGPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAY--IWTHNGVRIGNMDLNEL 730
I + ++P +T L++ C + Y W + G +
Sbjct: 437 -IKIIEGEPNLKVPGNVTAVLGETLKVPCHFPCKFSSYEKYWCKWNNTGCQALPSQDEGP 495
Query: 731 ETPNINIDGGL----LEITNASFADAGEYECVVKS-TVGKISTKTTVIV-EGPPGLPGGV 784
+N D L + + AD G Y C VK + V V E V
Sbjct: 496 SKAFVNCDENSRLVSLTLNLVTRADEGWYWCGVKQGHFYGETAAVYVAVEERKAAGSRDV 555
Query: 785 QVVEVHKTSATIQ 797
+ + +A +
Sbjct: 556 SLAKA--DAAPDE 566
Score = 81.6 bits (200), Expect = 5e-16
Identities = 46/327 (14%), Positives = 73/327 (22%), Gaps = 58/327 (17%)
Query: 210 NDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGN------LIINDP 263
N C N P + R L+ + ++I
Sbjct: 247 NVAKFLCRQSSGENCDVVVNTLGKRA---------PAFEGRILLNPQDKDGSFSVVITGL 297
Query: 264 RQVEDRGSYHCKASNKFGSIISESVQLAFGFIGE--FNLKRAPEIGNQNWGKAMF-CDPP 320
R+ ED G Y C A + +Q F+ E + + C
Sbjct: 298 RK-EDAGRYLCGAHSDGQLQEGSPIQAWQLFVNEESTIPRSPTVVKGVAGSSVAVLCPYN 356
Query: 321 TNYPGVNYYWARD------YFPNFVEEDKRVFVSYDG-------------ALYFSALEQI 361
YW P V+ + V Y+G + + L
Sbjct: 357 RKESKSIKYWCLWEGAQNGRCPLLVDSEGWVKAQYEGRLSLLEEPGNGTFTVILNQLTSR 416
Query: 362 DAGNYSCNVQSKVSDTGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPEAPKAGDKVRLEC 421
DAG Y C + V + T C
Sbjct: 417 DAGFYWCLTN--------GDTLWRTTVEIKIIEGEPNLKVPGNVTAVLGETLKVPCHFPC 468
Query: 422 VAFGYPVPSYNWTRRGSPLPRNAYFENFNRI-----------LTIPNVKVEDQGEYICRA 470
Y W G + LT+ V D+G Y C
Sbjct: 469 KFSSYEKYWCKWNNTGCQALPSQDEGPSKAFVNCDENSRLVSLTLNLVTRADEGWYWCGV 528
Query: 471 SNDRSALES-SVTISIQAEPNFTIPLT 496
E+ +V ++++
Sbjct: 529 KQGHFYGETAAVYVAVEERKAAGSRDV 555
Score = 68.1 bits (165), Expect = 7e-12
Identities = 39/225 (17%), Positives = 66/225 (29%), Gaps = 35/225 (15%)
Query: 596 SETYAGEGGNVTIFCNPEAA---PKPKFVWKKDGNIIG--------------SGGRRKIF 638
E + EG +V+I C + W + G G GR +
Sbjct: 8 EEVNSVEGNSVSITCYYPPTSVNRHTRKYWCRQGARGGCITLISSEGYVSSKYAGRANLT 67
Query: 639 ENGN-----LLISPVSRDDSGIYSCTATNVHGMDESKGRLIVLHGPSYYEQLPPKITIAA 693
+ I+ +S+DDSG Y C S + + T+
Sbjct: 68 NFPENGTFVVNIAQLSQDDSGRYKCGLGINSR-GLSFDVSLEVSQGPGLLNDTKVYTVDL 126
Query: 694 HRNLQLRCSAHTEELLDVAYIWTHNGVRIGNM-DLNELETPN------INIDGG-----L 741
R + + C TE ++ G+ + D + PN ++I G
Sbjct: 127 GRTVTINCPFKTENAQKRKSLYKQIGLYPVLVIDSSGYVNPNYTGRIRLDIQGTGQLLFS 186
Query: 742 LEITNASFADAGEYECVVKSTVGKISTKTTVIVEGPPGLPGGVQV 786
+ I +DAG+Y C + V P +
Sbjct: 187 VVINQLRLSDAGQYLCQAGDDSNSNKKNADLQVLKPEPELVYEDL 231
Score = 35.4 bits (80), Expect = 0.090
Identities = 14/71 (19%), Positives = 23/71 (32%)
Query: 741 LLEITNASFADAGEYECVVKSTVGKISTKTTVIVEGPPGLPGGVQVVEVHKTSATIQWTD 800
++ I S D+G Y+C + +S ++ V PGL +V V
Sbjct: 76 VVNIAQLSQDDSGRYKCGLGINSRGLSFDVSLEVSQGPGLLNDTKVYTVDLGRTVTINCP 135
Query: 801 GATNGRPITHY 811
T
Sbjct: 136 FKTENAQKRKS 146
>2oz4_A Intercellular adhesion molecule 1; IGSF domain, structural
plasticity, cell-surface dimerizatio adhesion; HET: NAG
FUC; 2.70A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 b.1.1.4
PDB: 1p53_A*
Length = 265
Score = 134 bits (337), Expect = 4e-35
Identities = 53/284 (18%), Positives = 83/284 (29%), Gaps = 38/284 (13%)
Query: 406 TFPEAPKAGDKVRLECVAFG-YPVPSYNWT-----RRGSPLPRNAYFENFNRILTIPNVK 459
P + + + C G +PV +R +P + +
Sbjct: 10 VSPRVLEVDTQGTVVCSLDGLFPVSEAQVHLALGDQRLNPTVTYGNDSFSAKASVSVTAE 69
Query: 460 VEDQGEYICRASNDRSALESSVTISIQAEPNFTIPLTDKHMDNQADLTWTCEAFGVPDVT 519
E C + E+ T++I + P + LT + ++T CEA VT
Sbjct: 70 DEGTQRLTCAVILGNQSQETLQTVTIYSFPAPNVILTKPEVSEGTEVTVKCEAHPRAKVT 129
Query: 520 YSWFRNGELLNSETLPLEDQDRYFIQDNVLTIRYLNPERDPAMYQCRAKN----QLKTRY 575
+ L + PE + + C A QL +
Sbjct: 130 LNGVPAQPLG----------------PRAQLLLKATPEDNGRSFSCSATLEVAGQLIHKN 173
Query: 576 SSAQLRVLTLKPSFKKRPLESETYAGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRR 635
+ +LRVL P +R E T C P P+ KDG G
Sbjct: 174 QTRELRVLY-GPRLDERDCPGNWTWPENSQQTPMCQAWGNPLPELKCLKDGTFPLPIGE- 231
Query: 636 KIFENGNLLISPVSRDDSGIYSCTATNVHGMDESKGRLIVLHGP 679
V+RD G Y C A + G + + V P
Sbjct: 232 ---------SVTVTRDLEGTYLCRARSTQGEVTREVTVNV-LSP 265
Score = 109 bits (274), Expect = 8e-27
Identities = 52/277 (18%), Positives = 85/277 (30%), Gaps = 43/277 (15%)
Query: 509 TCEAFGV---PDVTYSWFRNGELLNSETLPLEDQDRYFIQDNVLTIRYLNPERDPAMYQC 565
C G+ + + LN D ++ + C
Sbjct: 24 VCSLDGLFPVSEAQVHLALGDQRLNPTVTYGNDSFSA-----KASVSVTAEDEGTQRLTC 78
Query: 566 RAKNQLKTRYSSAQLRVLTLKPSFKKRPLESETYAGEGGNVTIFCNPEAAPKPKFVWKKD 625
+++ + + + + P+ + E EG VT+ C EA P+ K +
Sbjct: 79 AVILGNQSQETLQTVTIYS-FPAPNVILTKPE--VSEGTEVTVKC--EAHPRAK--VTLN 131
Query: 626 GNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTATN-VHGMDESKGR---LIVLHGPS- 680
G G R LL+ D+ +SC+AT V G K + L VL+GP
Sbjct: 132 GVPAQPLGPR-----AQLLLKATPEDNGRSFSCSATLEVAGQLIHKNQTRELRVLYGPRL 186
Query: 681 YYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGG 740
P T + C A L +G
Sbjct: 187 DERDCPGNWTWPENSQQTPMCQAWGNPL--PELKCLKDGTFPLP---------------- 228
Query: 741 LLEITNASFADAGEYECVVKSTVGKISTKTTVIVEGP 777
+ E + G Y C +ST G+++ + TV V P
Sbjct: 229 IGESVTVTRDLEGTYLCRARSTQGEVTREVTVNVLSP 265
Score = 84.7 bits (209), Expect = 3e-18
Identities = 32/233 (13%), Positives = 56/233 (24%), Gaps = 46/233 (19%)
Query: 359 EQIDAGNYSCNVQSKVSDTGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPEAPKAGDKVR 418
E +C V FP G +V
Sbjct: 69 EDEGTQRLTCAVILGNQSQET-----------LQTVTIYSFPAPNVILTKPEVSEGTEVT 117
Query: 419 LECVAFGYPVPSYNWTRRGSPLPRNAYFENFNRILTIPNVKVEDQG-EYICRASND---- 473
++C A + N P R + ED G + C A+ +
Sbjct: 118 VKCEAHPRAKVTLNGVPAQPLGP---------RAQLLLKATPEDNGRSFSCSATLEVAGQ 168
Query: 474 RSALESSVTISIQAEPNFTIPLTDKH---MDNQADLTWTCEAFGVPDVTYSWFRNGELLN 530
+ + + P + +N T C+A+G P ++G
Sbjct: 169 LIHKNQTRELRVLYGPRLDERDCPGNWTWPENS-QQTPMCQAWGNPLPELKCLKDGTFP- 226
Query: 531 SETLPLEDQDRYFIQDNVLTIRYLNPERDPAMYQCRAKNQLKTRYSSAQLRVL 583
L + + + Y CRA++ + VL
Sbjct: 227 -----LPIGESVTVTRD-----------LEGTYLCRARSTQGEVTREVTVNVL 263
Score = 81.3 bits (200), Expect = 5e-17
Identities = 42/284 (14%), Positives = 78/284 (27%), Gaps = 50/284 (17%)
Query: 212 ITLSCYA-GGYPNPSYE--WFKEDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVED 268
T+ C G +P + D + V D S ++ + E
Sbjct: 21 GTVVCSLDGLFPVSEAQVHLALGDQRLNPTVTYGNDSFS--------AKASVSVTAEDEG 72
Query: 269 RGSYHCKASNKFGSIISE---SVQLAFGFIGEFNLKRAPEIGNQNWGKA--MFCDPPTNY 323
C S + ++ E G + C+
Sbjct: 73 TQRLTCAVILGNQSQETLQTVTIYSFPAPNVILTKPEVSE------GTEVTVKCEAHPR- 125
Query: 324 PGVNYYWARDYFPNFVEEDKRVFVSYDGALYFSALEQIDAGNYSCNVQSKV-SDTGRNGP 382
V L A + + ++SC+ +V
Sbjct: 126 AKVTLNGVPAQPL-----------GPRAQLLLKATPEDNGRSFSCSATLEVAGQLIHKNQ 174
Query: 383 FFPLKVFPHSNFQQLKFPNNFPKTFPEAPKAGDKVRLECVAFGYPVPSYNWTRRGSPLPR 442
L+V + P N+ T+PE + C A+G P+P + G+
Sbjct: 175 TRELRVLYGPRLDERDCPGNW--TWPE----NSQQTPMCQAWGNPLPELKCLKDGTFPL- 227
Query: 443 NAYFENFNRILTIPNVKVEDQGEYICRASNDRSALESSVTISIQ 486
I V + +G Y+CRA + + + VT+++
Sbjct: 228 --------PIGESVTVTRDLEGTYLCRARSTQGEVTREVTVNVL 263
Score = 48.5 bits (115), Expect = 4e-06
Identities = 17/80 (21%), Positives = 26/80 (32%), Gaps = 21/80 (26%)
Query: 211 DITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVEDRG 270
T C A G P P + K D F L G + + G
Sbjct: 202 QQTPMCQAWGNPLPELKCLK-----------------DGTFPLPIGESVTV---TRDLEG 241
Query: 271 SYHCKASNKFGSIISESVQL 290
+Y C+A + G ++ V +
Sbjct: 242 TYLCRARSTQGE-VTREVTV 260
Score = 38.1 bits (88), Expect = 0.009
Identities = 20/170 (11%), Positives = 44/170 (25%), Gaps = 37/170 (21%)
Query: 210 NDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVEDR 269
++T+ C A + L ++ ++
Sbjct: 114 TEVTVKCEAHPRAKVTLNGVPAQ-------------------PLGPRAQLLLKATPEDNG 154
Query: 270 GSYHCKASNKFGSII---SESVQLAFGFIGEFNLKRAPEIGNQNWGKA--MFCDPPTNYP 324
S+ C A+ + + +++ +L + + + P C N P
Sbjct: 155 RSFSCSATLEVAGQLIHKNQTRELRVLYGPRLDERDCPGNWTWPENSQQTPMCQAWGN-P 213
Query: 325 GVNYYWARDYFPNFVEEDKRVFVSYDGALYFSALEQIDAGNYSCNVQSKV 374
+D + + V V+ D G Y C +S
Sbjct: 214 LPELKCLKDGTFP-LPIGESVTVTRD-----------LEGTYLCRARSTQ 251
Score = 34.3 bits (78), Expect = 0.16
Identities = 25/186 (13%), Positives = 47/186 (25%), Gaps = 27/186 (14%)
Query: 686 PPKIT----IAAHRNLQLRCSAHTEELLDVAYI-WTHNGVRIGNMDLNELETPNINIDGG 740
PP++ + + CS + A + R+ ++ +
Sbjct: 6 PPQLVSPRVLEVDTQGTVVCSLDGLFPVSEAQVHLALGDQRLNPTVTYGNDSFSAK---- 61
Query: 741 LLEITNASFADAGEYECVVKSTVGKISTKTTVIVEGPPGLPGGVQVVEVH---------K 791
A C V T TV + P + EV +
Sbjct: 62 ASVSVTAEDEGTQRLTCAVILGNQSQETLQTVTIYSFPAPNVILTKPEVSEGTEVTVKCE 121
Query: 792 TSATIQWT-DGATNGRPI--THYKIIARTNWNSTWF--NVSEHVIGKEVDRYTGRKEASI 846
+ T +G + A N F + + V G+ + + R+
Sbjct: 122 AHPRAKVTLNGVPAQPLGPRAQLLLKATPEDNGRSFSCSATLEVAGQLIHKNQTRE---- 177
Query: 847 ENVLVP 852
VL
Sbjct: 178 LRVLYG 183
>3mjg_X Beta-type platelet-derived growth factor receptor; protein-protein
complex, growth factor-receptor complex, TRA hormone
complex; HET: NDG NAG; 2.30A {Homo sapiens}
Length = 289
Score = 132 bits (333), Expect = 3e-34
Identities = 43/282 (15%), Positives = 74/282 (26%), Gaps = 36/282 (12%)
Query: 412 KAGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYFEN---FNRILTIPNVKVEDQGEYIC 468
L C W R P+ F+ +LT+ N+ D GEY C
Sbjct: 13 NVSSTFVLTCSGSA----PVVWERMSQEPPQEMAKAQDGTFSSVLTLTNLTGLDTGEYFC 68
Query: 469 RASND---RSALESSVTISIQAEPNFTIPLTDKHMDNQA----DLTWTCEAFGVPDVTYS 521
++ + + I + +P + + ++T C P + +
Sbjct: 69 THNDSRGLETDERKRLYIFVPDPTVGFLPNDAEELFIFLTEITEITIPCRV-TDPQLVVT 127
Query: 522 WFRNGELLNSETLPLEDQDRYFIQDNVLTIRYLNPERDPAMYQCRAKNQLKTRYSSAQLR 581
+ D R F + Y C+ + S A
Sbjct: 128 LHEKKGDVALPVPY--DHQRGFSGIF-----------EDRSYICKTTIGDREVDSDAYYV 174
Query: 582 VLTLKPSFKKRPLESETYAGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSG--------G 633
S +T +G N+T+ C F W G
Sbjct: 175 YRLQVSSINVSVNAVQTVVRQGENITLMCIVIGNEVVNFEWTYPRKESGRLVEPVTDFLL 234
Query: 634 RRKIFENGNLLISPVSRDDSGIYSCTATNVHGMDESKGRLIV 675
L I +DSG Y+C T + + + +
Sbjct: 235 DMPYHIRSILHIPSAELEDSGTYTCNVTESVNDHQDEKAINI 276
Score = 118 bits (297), Expect = 2e-29
Identities = 42/277 (15%), Positives = 74/277 (26%), Gaps = 26/277 (9%)
Query: 506 LTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQDNVLTIRYLNPERDPAMYQC 565
TC W R + E +D +VLT+ L D Y C
Sbjct: 18 FVLTCSGSA----PVVWERMSQEPPQEMAKAQDGTF----SSVLTLTNLTGL-DTGEYFC 68
Query: 566 RAKNQL---KTRYSSAQLRVLTLKPSFKKRPLESET-YAGEGGNVTIFCNPEAAPKPKFV 621
+ + V F E + E +TI C P+
Sbjct: 69 THNDSRGLETDERKRLYIFVPDPTVGFLPNDAEELFIFLTEITEITIPCRVTD-PQLVVT 127
Query: 622 WKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTATNVHGMDESKGRLIVLHGPSY 681
+ + + + Y C T +S + S
Sbjct: 128 LHEKKGDVALPVPY------DHQRGFSGIFEDRSYICKTTIGDREVDSDAYYVYRLQVSS 181
Query: 682 Y--EQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNM--DLNELETPNINI 737
+ + N+ L C E+++ WT+ G + + +
Sbjct: 182 INVSVNAVQTVVRQGENITLMCIVIGNEVVNF--EWTYPRKESGRLVEPVTDFLLDMPYH 239
Query: 738 DGGLLEITNASFADAGEYECVVKSTVGKISTKTTVIV 774
+L I +A D+G Y C V +V + + +
Sbjct: 240 IRSILHIPSAELEDSGTYTCNVTESVNDHQDEKAINI 276
Score = 104 bits (261), Expect = 8e-25
Identities = 35/265 (13%), Positives = 72/265 (27%), Gaps = 16/265 (6%)
Query: 330 WARDYFPNFVEEDKRVFVSYDGALYFSALEQIDAGNYSCNVQSKVSDTGRNGPFFPLKVF 389
W R E K ++ L + L +D G Y C + V
Sbjct: 30 WERMSQEPPQEMAKAQDGTFSSVLTLTNLTGLDTGEYFCTHNDSRGLETDERKRLYIFVP 89
Query: 390 PHSNFQQLKFPNNFPKTFPEAPKAGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYFENF 449
+ F N + ++ + C P + + +
Sbjct: 90 D----PTVGFLPNDAEELFIFLTEITEITIPCRVTD-PQLVVTLHEKKGDVALP-VPYDH 143
Query: 450 NRILTIPNVKVEDQGEYICRASNDRSALESSVTISIQAE---PNFTIPLTDKHMDNQADL 506
R + + YIC+ + ++S + + N ++ + ++
Sbjct: 144 QRGFSGIF----EDRSYICKTTIGDREVDSDAYYVYRLQVSSINVSVNAVQTVVRQGENI 199
Query: 507 TWTCEAFGVPDVTYSWFRNGELLNSETLPLED--QDRYFIQDNVLTIRYLNPERDPAMYQ 564
T C G V + W + P+ D D + ++L I E D Y
Sbjct: 200 TLMCIVIGNEVVNFEWTYPRKESGRLVEPVTDFLLDMPYHIRSILHIPSAELE-DSGTYT 258
Query: 565 CRAKNQLKTRYSSAQLRVLTLKPSF 589
C + + + ++
Sbjct: 259 CNVTESVNDHQDEKAINITVVESGH 283
Score = 93.2 bits (231), Expect = 6e-21
Identities = 43/297 (14%), Positives = 79/297 (26%), Gaps = 59/297 (19%)
Query: 212 ITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVEDRGS 271
L+C + W + ++ + L + + D G
Sbjct: 18 FVLTCSG----SAPVVWERMS-------QEPPQEMAKAQDGTFSSVLTLTNL-TGLDTGE 65
Query: 272 YHCKASNKFGSIISESVQL-------AFGFIGEFNLKRAPEIGNQNWGKAMF--CDPPTN 322
Y C ++ G E +L GF+ + C
Sbjct: 66 YFCTHNDSRGLETDERKRLYIFVPDPTVGFL---PNDAEELFIFLTEITEITIPCRVTD- 121
Query: 323 YPGVNYYWARDYFPNFVEEDKRVFVSYDGALYFSALEQIDAGNYSCNVQSKVSDTGRNGP 382
P + + D + V YD FS + + +Y C
Sbjct: 122 -PQLVVTLHEK------KGDVALPVPYDHQRGFSGIF--EDRSYICKTTIGD-------- 164
Query: 383 FFPLKVFPHSNFQQLKFPNNFPKTFPEAP----KAGDKVRLECVAFGYPVPSYNWTRRGS 438
+ + + + A + G+ + L C+ G V ++ WT
Sbjct: 165 ----REVDSDAYYVYRLQVSSINVSVNAVQTVVRQGENITLMCIVIGNEVVNFEWTYPRK 220
Query: 439 PLPRNAYFEN---------FNRILTIPNVKVEDQGEYICRASNDRSALESSVTISIQ 486
R IL IP+ ++ED G Y C + + + I+I
Sbjct: 221 ESGRLVEPVTDFLLDMPYHIRSILHIPSAELEDSGTYTCNVTESVNDHQDEKAINIT 277
Score = 69.7 bits (170), Expect = 6e-13
Identities = 29/244 (11%), Positives = 62/244 (25%), Gaps = 44/244 (18%)
Query: 593 PLESETYAGEGGNVTIFCNPEAAPKPKFVWKKDGNII--GSGGRRKIFENGNLLISPVSR 650
P E + C+ VW++ + + L ++ ++
Sbjct: 5 PPGPELVLNVSSTFVLTCSGS----APVVWERMSQEPPQEMAKAQDGTFSSVLTLTNLTG 60
Query: 651 DDSGIYSCTATNVHGMDESKGRLIVLHGPSYY------EQLPPKITIAAHRNLQLRCSAH 704
D+G Y CT + G++ + + + + P + I + + + C
Sbjct: 61 LDTGEYFCTHNDSRGLETDERKRLYIFVPDPTVGFLPNDAEELFIFLTEITEITIPCRVT 120
Query: 705 TEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEITNASFADAGEYECVVKSTVG 764
+L G++ L G + Y C
Sbjct: 121 DPQL---VVTLHEKK---GDVALPVPYDHQRGFSG---------IFEDRSYICKTTIGDR 165
Query: 765 KI-STKTTVIVEGPPGLPGGVQVVEVH---------------KTSATIQWT-DGATNGRP 807
++ S V + V V+ +WT +GR
Sbjct: 166 EVDSDAYYVYRLQVSSINVSVNAVQTVVRQGENITLMCIVIGNEVVNFEWTYPRKESGRL 225
Query: 808 ITHY 811
+
Sbjct: 226 VEPV 229
Score = 57.0 bits (137), Expect = 9e-09
Identities = 21/76 (27%), Positives = 31/76 (40%), Gaps = 2/76 (2%)
Query: 211 DITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVEDRG 270
+ITL C G ++EW RLV + D L D + + L I ++ED G
Sbjct: 198 NITLMCIVIGNEVVNFEWTYPRKESGRLVEPVTDFLLDMPYHIR-SILHIPSA-ELEDSG 255
Query: 271 SYHCKASNKFGSIISE 286
+Y C + E
Sbjct: 256 TYTCNVTESVNDHQDE 271
>3mtr_A N-CAM-1, NCAM-1, neural cell adhesion molecule 1; immunoglobulin
domain, fibronectin type III repeat, CE adhesion; 1.80A
{Homo sapiens}
Length = 215
Score = 129 bits (325), Expect = 4e-34
Identities = 51/232 (21%), Positives = 84/232 (36%), Gaps = 35/232 (15%)
Query: 654 GIYSCTATNVHGMDESKGRLIVLHGPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAY 713
Y+ ++ + R ++ P Q P + + + C +
Sbjct: 1 ATYAAASSAL------VPRGSHMYAPKL--QGPVAVYTWEGNQVNITCEVFAYPSATI-- 50
Query: 714 IWTHNGVRIGNMDLNELETPNINI----DGGLLEITNASFADAGEYECVVKSTVGKISTK 769
W +G L NI I LE+T S D G Y C + +G+ S +
Sbjct: 51 SWFRDG-----QLLPSSNYSNIKIYNTPSASYLEVTPDSENDFGNYNCTAVNRIGQESLE 105
Query: 770 TTVIVEGPPGLPGGVQVVEVHKTSATIQWTD-GATNGRPITHYKI----IARTNWNSTWF 824
++ P P VE + ++A +Q+ + AT G PI YK + W+S W+
Sbjct: 106 FILVQADTPSSPSID-QVEPYSSTAQVQFDEPEATGGVPILKYKAEWRAVGEEVWHSKWY 164
Query: 825 NVSEHVIGKEVDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPSP 876
+ E +I L P +TY ++ A N G GE S+ S
Sbjct: 165 DAKEAS---------MEGIVTIVG-LKPETTYAVRLAALNGKGLGEISAASE 206
Score = 84.1 bits (208), Expect = 2e-18
Identities = 34/137 (24%), Positives = 49/137 (35%), Gaps = 20/137 (14%)
Query: 561 AMYQCRAKNQLKTRYSSAQLRVLTLKPSFKKRPLESETYAGEGGNVTIFCNPEAAPKPKF 620
A Y + + P + P Y EG V I C A P
Sbjct: 1 ATYAAASSALVPRGSHMY-------APKLQG-P--VAVYTWEGNQVNITCEVFAYPSATI 50
Query: 621 VWKKDGNIIGSGG--RRKIFENGN---LLISPVSRDDSGIYSCTATNVHGMDESKGRLIV 675
W +DG ++ S KI+ + L ++P S +D G Y+CTA N G + + L+
Sbjct: 51 SWFRDGQLLPSSNYSNIKIYNTPSASYLEVTPDSENDFGNYNCTAVNRIGQESLEFILVQ 110
Query: 676 LHGPSYYEQLPPKITIA 692
PS P I
Sbjct: 111 ADTPS-----SPSIDQV 122
Score = 64.1 bits (156), Expect = 2e-11
Identities = 20/107 (18%), Positives = 35/107 (32%), Gaps = 12/107 (11%)
Query: 412 KAGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYF------ENFNRILTIPNVKVEDQGE 465
G++V + C F YP + +W R G LP + Y L + D G
Sbjct: 31 WEGNQVNITCEVFAYPSATISWFRDGQLLPSSNYSNIKIYNTPSASYLEVTPDSENDFGN 90
Query: 466 YICRASNDRSALESSVTISIQAEPNFTIPLTDKHMDNQAD---LTWT 509
Y C A N + P+ + ++ + + +
Sbjct: 91 YNCTAVNRIGQESLEFILVQADTPS---SPSIDQVEPYSSTAQVQFD 134
Score = 56.8 bits (137), Expect = 4e-09
Identities = 29/129 (22%), Positives = 40/129 (31%), Gaps = 18/129 (13%)
Query: 464 GEYICRASNDRSALESSVTISIQAEPNFTIPLTDKHMDNQADLTWTCEAFGVPDVTYSWF 523
Y +S S P P + + TCE F P T SWF
Sbjct: 1 ATYAAASSA------LVPRGSHMYAPKLQGP-VAVYTWEGNQVNITCEVFAYPSATISWF 53
Query: 524 RNGELLNSETLPLEDQDRYFIQDN----VLTIRYLNPERDPAMYQCRAKNQLKTRYSSAQ 579
R+G+LL S + I + L + + D Y C A N++
Sbjct: 54 RDGQLLPS-----SNYSNIKIYNTPSASYLEVTPDSEN-DFGNYNCTAVNRIGQESLEFI 107
Query: 580 LRVLTLKPS 588
L PS
Sbjct: 108 LVQAD-TPS 115
Score = 53.7 bits (129), Expect = 4e-08
Identities = 22/122 (18%), Positives = 39/122 (31%), Gaps = 19/122 (15%)
Query: 173 TYQYGMDIENPDKIPRGPYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKED 232
TY P ++ P V N + ++C YP+ + WF++
Sbjct: 2 TYAAASSALVPRGSHMYAPKLQGPVAVYTWEG-----NQVNITCEVFAYPSATISWFRDG 56
Query: 233 YVQDRLVANLIDPLSDKRFTLSGGN----LIINDPRQVEDRGSYHCKASNKFGSIISESV 288
L+ + + L + + D G+Y+C A N+ G S
Sbjct: 57 --------QLLPSSNYSNIKIYNTPSASYLEVTPDSE-NDFGNYNCTAVNRIGQ-ESLEF 106
Query: 289 QL 290
L
Sbjct: 107 IL 108
Score = 44.4 bits (105), Expect = 6e-05
Identities = 17/75 (22%), Positives = 28/75 (37%), Gaps = 1/75 (1%)
Query: 904 ISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETLKEYGNVGIAVVRIPSEFYYTEYEVK 963
+ ++ P P + YK WR + + S+ +V I T Y V+
Sbjct: 131 VQFDE-PEATGGVPILKYKAEWRAVGEEVWHSKWYDAKEASMEGIVTIVGLKPETTYAVR 189
Query: 964 VQAINDVGPGPESEV 978
+ A+N G G S
Sbjct: 190 LAALNGKGLGEISAA 204
>1f97_A Junction adhesion molecule; immunoglobulin superfamily,
beta-sandwich fold, cell adhesion; 2.50A {Mus musculus}
SCOP: b.1.1.1 b.1.1.4
Length = 212
Score = 128 bits (322), Expect = 1e-33
Identities = 39/215 (18%), Positives = 70/215 (32%), Gaps = 20/215 (9%)
Query: 586 KPSFKKRPLESETYAGEGGNVTIFCNPEAAPKPKFVWKK-----------DGNIIGSGGR 634
K S S+ E ++ + C P+ WK + I
Sbjct: 1 KGSVYTAQ--SDVQVPENESIKLTCTYSGFSSPRVEWKFVQGSTTALVCYNSQITAPYAD 58
Query: 635 RKIFENGNLLISPVSRDDSGIYSCTATNVHGMDESKGRLIVL-HGPSYYEQLPPKITIAA 693
R F + + S V+R D+G Y+C + G + + + + P + ++
Sbjct: 59 RVTFSSSGITFSSVTRKDNGEYTCMVSEEGGQNYGEVSIHLTVLVPPSKPTISVPSSVTI 118
Query: 694 HRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNEL-----ETPNINIDGGLLEITNAS 748
L CS H Y W +G+ + D + + I+ G L +
Sbjct: 119 GNRAVLTCSEHDGSPP-SEYSWFKDGISMLTADAKKTRAFMNSSFTIDPKSGDLIFDPVT 177
Query: 749 FADAGEYECVVKSTVGKISTKTTVIVEGPPGLPGG 783
D+GEY C ++ G ++ GG
Sbjct: 178 AFDSGEYYCQAQNGYGTAMRSEAAHMDAVELNVGG 212
Score = 120 bits (301), Expect = 7e-31
Identities = 34/197 (17%), Positives = 66/197 (33%), Gaps = 21/197 (10%)
Query: 412 KAGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYFENF------------NRILTIPNVK 459
+ ++L C G+ P W + + + +T +V
Sbjct: 14 PENESIKLTCTYSGFSSPRVEWKFVQGSTTALVCYNSQITAPYADRVTFSSSGITFSSVT 73
Query: 460 VEDQGEYICRASN--DRSALESSVTISIQAEPNFTIPLTDKHMDNQADLTWTCEAF-GVP 516
+D GEY C S ++ E S+ +++ P+ + TC G P
Sbjct: 74 RKDNGEYTCMVSEEGGQNYGEVSIHLTVLVPPSKPTISVPSSVTIGNRAVLTCSEHDGSP 133
Query: 517 DVTYSWFRNGELL---NSETLPLEDQDRYFIQDNV--LTIRYLNPERDPAMYQCRAKNQL 571
YSWF++G + +++ + I L + D Y C+A+N
Sbjct: 134 PSEYSWFKDGISMLTADAKKTRAFMNSSFTIDPKSGDLIFDPVTAF-DSGEYYCQAQNGY 192
Query: 572 KTRYSSAQLRVLTLKPS 588
T S + ++ +
Sbjct: 193 GTAMRSEAAHMDAVELN 209
Score = 114 bits (287), Expect = 5e-29
Identities = 35/205 (17%), Positives = 66/205 (32%), Gaps = 21/205 (10%)
Query: 489 PNFTIPLTDKHMDNQADLTWTCEAFGVPDVTYSWFRNG-----ELLNSETLPLEDQDRYF 543
+ +D + + TC G W + + + DR
Sbjct: 2 GSVYTAQSDVQVPENESIKLTCTYSGFSSPRVEWKFVQGSTTALVCYNSQITAPYADRVT 61
Query: 544 IQDNVLTIRYLNPERDPAMYQCRAKNQLKTRYSSAQLRVLTL-KPSFKKRPLESETYAGE 602
+ +T + + D Y C + Y + + L PS +
Sbjct: 62 FSSSGITFSSVTRK-DNGEYTCMVSEEGGQNYGEVSIHLTVLVPPSKPTIS--VPSSVTI 118
Query: 603 GGNVTIFCN-PEAAPKPKFVWKKDGNIIGSGGRRKIF-----------ENGNLLISPVSR 650
G + C+ + +P ++ W KDG + + +K ++G+L+ PV+
Sbjct: 119 GNRAVLTCSEHDGSPPSEYSWFKDGISMLTADAKKTRAFMNSSFTIDPKSGDLIFDPVTA 178
Query: 651 DDSGIYSCTATNVHGMDESKGRLIV 675
DSG Y C A N +G +
Sbjct: 179 FDSGEYYCQAQNGYGTAMRSEAAHM 203
Score = 86.6 bits (214), Expect = 2e-19
Identities = 37/199 (18%), Positives = 56/199 (28%), Gaps = 22/199 (11%)
Query: 190 PYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKED--YVQDRLVANLIDPLS 247
+DV ++ I L+C G+ +P EW + I
Sbjct: 2 GSVYTAQSDVQVPENE-----SIKLTCTYSGFSSPRVEWKFVQGSTTALVCYNSQITAPY 56
Query: 248 DKRFTLSGGNLIINDPRQVEDRGSYHCKASNKFGSIISE-SVQLAFGFIGEFNLKRAPEI 306
R T S + + + +D G Y C S + G E S+ L
Sbjct: 57 ADRVTFSSSGITFSSVTR-KDNGEYTCMVSEEGGQNYGEVSIHLTVLVPPSK--PTISVP 113
Query: 307 GNQNWGK-AMF-CDPPTNYPGVNYYWARD---------YFPNFVEEDKRVFVSYDGALYF 355
+ G A+ C P Y W +D G L F
Sbjct: 114 SSVTIGNRAVLTCSEHDGSPPSEYSWFKDGISMLTADAKKTRAFMNSSFTIDPKSGDLIF 173
Query: 356 SALEQIDAGNYSCNVQSKV 374
+ D+G Y C Q+
Sbjct: 174 DPVTAFDSGEYYCQAQNGY 192
Score = 58.4 bits (141), Expect = 1e-09
Identities = 23/97 (23%), Positives = 34/97 (35%), Gaps = 9/97 (9%)
Query: 190 PYFIKQPTDVVFDLSKRSILNDITLSCYAG-GYPNPSYEWFKEDYVQDRLVANLIDPLSD 248
P + N L+C G P Y WFK+ A +
Sbjct: 105 PSKPTISVPSSVTIG-----NRAVLTCSEHDGSPPSEYSWFKDGISMLTADAKKTRAFMN 159
Query: 249 KRFTLS--GGNLIINDPRQVEDRGSYHCKASNKFGSI 283
FT+ G+LI + D G Y+C+A N +G+
Sbjct: 160 SSFTIDPKSGDLIFDPV-TAFDSGEYYCQAQNGYGTA 195
>2ibg_A CG9211-PA, GH03927P; IHOG, fibronectin type III, protein binding;
2.20A {Drosophila melanogaster} SCOP: b.1.2.1 b.1.2.1
PDB: 2ibb_A
Length = 214
Score = 128 bits (322), Expect = 1e-33
Identities = 31/210 (14%), Positives = 66/210 (31%), Gaps = 15/210 (7%)
Query: 778 PGLPGGVQVVEVHKTSATIQWTDGATNGRPITHYKIIART-NWNSTWFNVSEHVIGKEVD 836
P V + S ++W +G PI +K+ R W ++++ +
Sbjct: 2 TYPPTPPNVTRLSDESVMLRWMVPRNDGLPIVIFKVQYRMVGKRKNWQTTNDNIPYGKPK 61
Query: 837 RYTGRK---EASIENVLVPWSTYEFKVIAGNELGYGEPSSPSPQYNTPADKPYQ---APS 890
+ AS+ + L P TY F+++A + S+ S ++ P
Sbjct: 62 WNSELGKSFTASVTD-LKPQHTYRFRILAVYSNNDNKESNTSAKFYLQPGAALDPMPVPE 120
Query: 891 RIGGGGGKIGDLSISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETLKEYGNVGIAVVR 950
+ + + W + Y ++R + + E + +
Sbjct: 121 LLEIEEYSETAVVLHWSL-ASDADEHLITGYYAYYRPSSSAGEYFKATIEGAHARSFKIA 179
Query: 951 --IPSEFYYTEYEVKVQAINDVGPGPESEV 978
T YE K+Q+ + S +
Sbjct: 180 PLET----ATMYEFKLQSFSAASASEFSAL 205
Score = 66.0 bits (161), Expect = 3e-12
Identities = 20/117 (17%), Positives = 41/117 (35%), Gaps = 11/117 (9%)
Query: 761 STVGKISTKTTVIVEGPPGLPGGVQVVEVHKTSATIQWTDGA-TNGRPITHYKIIAR-TN 818
S P +P +++ E +T+ + W+ + + IT Y R ++
Sbjct: 99 SNTSAKFYLQPGAALDPMPVPELLEIEEYSETAVVLHWSLASDADEHLITGYYAYYRPSS 158
Query: 819 WNSTWFNVSEHVIGKEVDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPS 875
+F + + G + I L + YEFK+ + + E S+
Sbjct: 159 SAGEYFKAT--IEGAHARSFK------IAP-LETATMYEFKLQSFSAASASEFSALK 206
>1nbq_A JAM, junctional adhesion molecule 1, PAM-1; reovirus receptor,
tight junction formation, immunoglobulin superfamily,
immune system; 2.90A {Homo sapiens} SCOP: b.1.1.1
b.1.1.4 PDB: 3eoy_G
Length = 209
Score = 127 bits (321), Expect = 1e-33
Identities = 34/188 (18%), Positives = 67/188 (35%), Gaps = 20/188 (10%)
Query: 505 DLTWTCEAFGVPDVTYSWFRNGELL-----NSETLPLEDQDRYFIQDNVLTIRYLNPERD 559
+ +C G W + + + +DR +T + + E D
Sbjct: 21 PVKLSCAYSGFSSPRVEWKFDQGDTTRLVCYNNKITASYEDRVTFLPTGITFKSVTRE-D 79
Query: 560 PAMYQCRAKNQLKTRYSSAQLRVLTL-KPSFKKRPLESETYAGEGGNVTIFCN-PEAAPK 617
Y C + Y +++++ L PS + A G + C+ + +P
Sbjct: 80 TGTYTCMVSEEGGNSYGEVKVKLIVLVPPSKPTVN--IPSSATIGNRAVLTCSEQDGSPP 137
Query: 618 PKFVWKKDGNIIGSGGRRKIF----------ENGNLLISPVSRDDSGIYSCTATNVHGMD 667
++ W KDG ++ + + G L+ P+S D+G YSC A N +G
Sbjct: 138 SEYTWFKDGIVMPTNPKSTRAFSNSSYVLNPTTGELVFDPLSASDTGEYSCEARNGYGTP 197
Query: 668 ESKGRLIV 675
+ + +
Sbjct: 198 MTSNAVRM 205
Score = 127 bits (321), Expect = 1e-33
Identities = 41/190 (21%), Positives = 63/190 (33%), Gaps = 20/190 (10%)
Query: 412 KAGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYFEN------------FNRILTIPNVK 459
+ V+L C G+ P W R + N +T +V
Sbjct: 17 PENNPVKLSCAYSGFSSPRVEWKFDQGDTTRLVCYNNKITASYEDRVTFLPTGITFKSVT 76
Query: 460 VEDQGEYICRASN--DRSALESSVTISIQAEPNFTIPLTDKHMDNQADLTWTC-EAFGVP 516
ED G Y C S S E V + + P+ TC E G P
Sbjct: 77 REDTGTYTCMVSEEGGNSYGEVKVKLIVLVPPSKPTVNIPSSATIGNRAVLTCSEQDGSP 136
Query: 517 DVTYSWFRNGELL--NSETLPLEDQDRYFIQDN--VLTIRYLNPERDPAMYQCRAKNQLK 572
Y+WF++G ++ N ++ Y + L L+ D Y C A+N
Sbjct: 137 PSEYTWFKDGIVMPTNPKSTRAFSNSSYVLNPTTGELVFDPLSAS-DTGEYSCEARNGYG 195
Query: 573 TRYSSAQLRV 582
T +S +R+
Sbjct: 196 TPMTSNAVRM 205
Score = 125 bits (315), Expect = 8e-33
Identities = 41/206 (19%), Positives = 66/206 (32%), Gaps = 17/206 (8%)
Query: 587 PSFKKRPLESETYAGEGGNVTIFCNPEAAPKPKFVWKKDG-----------NIIGSGGRR 635
S E E E V + C P+ WK D I S R
Sbjct: 3 GSVTVHSSEPEVRIPENNPVKLSCAYSGFSSPRVEWKFDQGDTTRLVCYNNKITASYEDR 62
Query: 636 KIFENGNLLISPVSRDDSGIYSCTATNVHGMDESKGRLIVL-HGPSYYEQLPPKITIAAH 694
F + V+R+D+G Y+C + G + ++ ++ P + +
Sbjct: 63 VTFLPTGITFKSVTREDTGTYTCMVSEEGGNSYGEVKVKLIVLVPPSKPTVNIPSSATIG 122
Query: 695 RNLQLRCSAHTEELLDVAYIWTHNGVRI----GNMDLNELETPNINIDGGLLEITNASFA 750
L CS Y W +G+ + + + +N G L S +
Sbjct: 123 NRAVLTCSEQDGSPP-SEYTWFKDGIVMPTNPKSTRAFSNSSYVLNPTTGELVFDPLSAS 181
Query: 751 DAGEYECVVKSTVGKISTKTTVIVEG 776
D GEY C ++ G T V +E
Sbjct: 182 DTGEYSCEARNGYGTPMTSNAVRMEA 207
Score = 89.6 bits (222), Expect = 2e-20
Identities = 40/181 (22%), Positives = 57/181 (31%), Gaps = 22/181 (12%)
Query: 210 NDITLSCYAGGYPNPSYEWFKED--YVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVE 267
N + LSC G+ +P EW + + N I + R T + + E
Sbjct: 20 NPVKLSCAYSGFSSPRVEWKFDQGDTTRLVCYNNKITASYEDRVTFLPTGITFKSVTR-E 78
Query: 268 DRGSYHCKASNKFGSIISE-----SVQLAFGFIGEFNLKRAPEIGNQNWGKAMF-CDPPT 321
D G+Y C S + G+ E V + A GN+ A+ C
Sbjct: 79 DTGTYTCMVSEEGGNSYGEVKVKLIVLVPPSKPTVNIPSSATI-GNR----AVLTCSEQD 133
Query: 322 NYPGVNYYWARD--------YFPNFVEEDKRVFVSYDGALYFSALEQIDAGNYSCNVQSK 373
P Y W +D V G L F L D G YSC ++
Sbjct: 134 GSPPSEYTWFKDGIVMPTNPKSTRAFSNSSYVLNPTTGELVFDPLSASDTGEYSCEARNG 193
Query: 374 V 374
Sbjct: 194 Y 194
Score = 81.5 bits (201), Expect = 1e-17
Identities = 33/184 (17%), Positives = 53/184 (28%), Gaps = 40/184 (21%)
Query: 330 WARD---------YFPNFVEEDKRVFVSYDGALYFSALEQIDAGNYSCNVQSKVSDTGRN 380
W D Y + + F ++ + D G Y+C V + G +
Sbjct: 38 WKFDQGDTTRLVCYNNKITASYEDRVTFLPTGITFKSVTREDTGTYTCMVSEEG---GNS 94
Query: 381 GPFFPLKVFPHSNFQQLKFPNNFPKTFPEAPK-----AGDKVRLEC-VAFGYPVPSYNWT 434
+K+ P + P G++ L C G P Y W
Sbjct: 95 YGEVKVKLIVL-----------VPPSKPTVNIPSSATIGNRAVLTCSEQDGSPPSEYTWF 143
Query: 435 RRGSPLPRNA-----------YFENFNRILTIPNVKVEDQGEYICRASNDRSALESSVTI 483
+ G +P N L + D GEY C A N +S +
Sbjct: 144 KDGIVMPTNPKSTRAFSNSSYVLNPTTGELVFDPLSASDTGEYSCEARNGYGTPMTSNAV 203
Query: 484 SIQA 487
++A
Sbjct: 204 RMEA 207
Score = 61.5 bits (149), Expect = 9e-11
Identities = 21/103 (20%), Positives = 35/103 (33%), Gaps = 9/103 (8%)
Query: 190 PYFIKQPTDVVFDLSKRSILNDITLSCYA-GGYPNPSYEWFKEDY-VQDRLVANLIDPLS 247
P + N L+C G P Y WFK+ + + S
Sbjct: 108 PSKPTVNIPSSATIG-----NRAVLTCSEQDGSPPSEYTWFKDGIVMPTNPKSTRAFSNS 162
Query: 248 DKRFTLSGGNLIINDPRQVEDRGSYHCKASNKFGSIISESVQL 290
+ G L+ + D G Y C+A N +G+ ++ S +
Sbjct: 163 SYVLNPTTGELVFDPLSA-SDTGEYSCEARNGYGTPMT-SNAV 203
>1zlg_A Anosmin 1; insulin-like growth factor receptor Cys-rich fold, WHEY
acidic protein fold, fibronectin type III fold, hormone-
growth factor complex; NMR {Homo sapiens}
Length = 680
Score = 137 bits (346), Expect = 1e-33
Identities = 39/237 (16%), Positives = 75/237 (31%), Gaps = 16/237 (6%)
Query: 751 DAGEYECVVKSTVGKISTKTTVIVEGPPGLPGGVQVVEVHKTSATIQWTDGATNGRPITH 810
+G +C T+ P ++ E+ ++W+
Sbjct: 134 CSGVKKCCSNGCGHTCQVPKTLYKGVPLKPRKELRFTELQSGQLEVKWSSKFNISIEPVI 193
Query: 811 YKIIARTNWNSTWFNVSEHVIGKEVDRYTG-RKEASIENVLVPWSTYEFKVIAGNELGYG 869
Y + R N+ SE + + + + P Y+F+V A N G
Sbjct: 194 YVVQRRWNYGIHP---SEDDATHWQTVAQTTDERVQLTD-IRPSRWYQFRVAAVNVHGTR 249
Query: 870 EPSSPSPQYNTPAD-KPYQAPSRIGGGGGKIG-----DLSISWEPLPREKQNAPNIYYKI 923
++PS + + D AP+ + + ++I W+ E+ + P +YK+
Sbjct: 250 GFTAPSKHFRSSKDPSAPPAPANLRLANSTVNSDGSVTVTIVWDLP--EEPDIPVHHYKV 307
Query: 924 FWRKK-NDTEFQSETLKEYGNVGIAV--VRIPSEFYYTEYEVKVQAINDVGPGPESE 977
FW + K V + +Y V++QAI G
Sbjct: 308 FWSWMVSSKSLVPTKKKRRKTTDGFQNSVILEKLQPDCDYVVELQAITYWGQTRLKS 364
Score = 81.2 bits (199), Expect = 7e-16
Identities = 35/241 (14%), Positives = 66/241 (27%), Gaps = 38/241 (15%)
Query: 770 TTVIVEGPPGLPGGVQVVEVH-----KTSATIQWTDGATNGRPITHYKIIARTNWNSTWF 824
+ P P +++ + TI W P+ HYK+ +S
Sbjct: 259 RSSKDPSAPPAPANLRLANSTVNSDGSVTVTIVWDLPEEPDIPVHHYKVFWSWMVSSKSL 318
Query: 825 NVSEHVIGKEVDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSP--SPQYNTPA 882
++ K D + +E L P Y ++ A G S S + +
Sbjct: 319 VPTKKKRRKTTDGFQ--NSVILEK-LQPDCDYVVELQAITYWGQTRLKSAKVSLHFTSTH 375
Query: 883 DKPYQ-----------------------APSRIGGGGGKIGDLS--ISWEPLPREKQNAP 917
+ P +G + G L + W+ N
Sbjct: 376 ATNNKEQLVKTRKGGIQTQLPFQRRRPTRPLEVGAPFYQDGQLQVKVYWKKTEDPTVNRY 435
Query: 918 NIYYKIFWRKKNDTEFQSETLKEYGNVGIAVVRIPSEFYYTEYEVKVQAINDVGPGPESE 977
++ + N T + + G + + + +Y+V VQ I
Sbjct: 436 HVRWFPEACAHNRT---TGSEASSGMTHENYIILQDLSFSCKYKVTVQPIRPKSHSKAEA 492
Query: 978 V 978
V
Sbjct: 493 V 493
Score = 73.1 bits (178), Expect = 3e-13
Identities = 31/254 (12%), Positives = 65/254 (25%), Gaps = 44/254 (17%)
Query: 758 VVKSTVGKISTKTTVIVEGPPG-LPGGVQVVEVHKTSATIQWTDGATNGRPITHYKIIAR 816
+VK+ G I T+ P L G + + + W T + Y +
Sbjct: 383 LVKTRKGGIQTQLPFQRRRPTRPLEVGAPFYQDGQLQVKVYWKK--TEDPTVNRYHV--- 437
Query: 817 TNWNSTWFNVSEHVIGKEVDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSS--- 873
W + + T +++ L Y+ V + + +
Sbjct: 438 -RWFPEACAHNRTTGSEASSGMTHENYIILQD-LSFSCKYKVTVQPIRPKSHSKAEAVFF 495
Query: 874 ---------------------PSPQYNTPADKPYQAPSRIGGGGGKIGDLSISWEPLPRE 912
+ KP + I SW+ +
Sbjct: 496 TTPPCSALKGKSHKPIGCLGEAGHVLSKVLAKPENLSASFIVQDVNI-TGHFSWKM-AKA 553
Query: 913 KQNAPNIYYKIFWRKKNDTEFQSETLKEYGNVGIAVVRIPSEFYY--------TEYEVKV 964
P +++ W + Q+ + + + + T Y ++V
Sbjct: 554 NLYQPMTGFQVTWAEVTTESRQNSL--PNSIISQSQILPSDHYVLTVPNLRPSTLYRLEV 611
Query: 965 QAINDVGPGPESEV 978
Q + G GP +
Sbjct: 612 QVLTPGGEGPATIK 625
Score = 61.9 bits (149), Expect = 7e-10
Identities = 20/128 (15%), Positives = 40/128 (31%), Gaps = 6/128 (4%)
Query: 767 STKTTVIVEGPPGLPGGVQVVEVHKTSATIQWTD-GATNGRPITHYKIIARTNWNSTWFN 825
+ V P +V+ + W A +P+T +++ + N
Sbjct: 517 AGHVLSKVLAKPENLSASFIVQDVNITGHFSWKMAKANLYQPMTGFQVTWAEVTTESRQN 576
Query: 826 VSEHVIGKEVDRYTGRK-EASIENVLVPWSTYEFKVIAGNELGYGEPSSPSPQYNTPADK 884
+ I + ++ N L P + Y +V G G + + + TP
Sbjct: 577 SLPNSIISQSQILPSDHYVLTVPN-LRPSTLYRLEVQVLTPGGEGPATIKTFR--TPELP 633
Query: 885 PYQAPSRI 892
P + R
Sbjct: 634 P-SSAHRS 640
>1uey_A KIAA0343 protein; immunoglobulin-like beta-sandwich fold, NG-CAM
related cell adhesion molecule, fibronectin type III
domain, structural genomics; NMR {Homo sapiens} SCOP:
b.1.2.1
Length = 127
Score = 124 bits (314), Expect = 1e-33
Identities = 34/130 (26%), Positives = 51/130 (39%), Gaps = 8/130 (6%)
Query: 767 STKTTVIVEGPPGLPGGVQVVEVHKTSATIQWTDGATNGRPITHYKIIARTNWNSTWFNV 826
S T V P P +++ + S + WT G N PIT + I +
Sbjct: 6 SGPTPAPVYDVPNPPFDLELTDQLDKSVQLSWTPGDDNNSPITKFIIEYEDAMHKPGLWH 65
Query: 827 SEHVIGKEVDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPSPQYNTPADKPY 886
+G + + N L P+ Y F+V+A N +G PS S QY T A +P
Sbjct: 66 -------HQTEVSGTQTTAQLN-LSPYVNYSFRVMAVNSIGKSLPSEASEQYLTKASEPD 117
Query: 887 QAPSRIGGGG 896
+ P+ G
Sbjct: 118 KNPTSGPSSG 127
Score = 41.6 bits (98), Expect = 1e-04
Identities = 25/119 (21%), Positives = 40/119 (33%), Gaps = 21/119 (17%)
Query: 867 GYGEPSSPSPQYNTPADKPYQAPSRIGGGGGKIGDLS-----ISWEPLPREKQNAPNIYY 921
G S P+P D P P + ++ D +SW P + N+P +
Sbjct: 1 GSSGSSGPTPA--PVYDVP-NPPFDL-----ELTDQLDKSVQLSWTP--GDDNNSPITKF 50
Query: 922 KI-FWRKKNDTEFQSETLKEYGNVGIAVVR-IPSEFYYTEYEVKVQAINDVGPGPESEV 978
I + + + G A + P Y Y +V A+N +G SE
Sbjct: 51 IIEYEDAMHKPGLWHHQTEVSGTQTTAQLNLSP----YVNYSFRVMAVNSIGKSLPSEA 105
>1rhf_A Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3 family, cellular
adhesion, ligand-independent DIME mutational analysis,
transferase; HET: EPE; 1.96A {Homo sapiens} SCOP:
b.1.1.1 b.1.1.4
Length = 182
Score = 123 bits (311), Expect = 2e-32
Identities = 35/178 (19%), Positives = 66/178 (37%), Gaps = 22/178 (12%)
Query: 414 GDKVRLECVAFGYPVPSYNWTRRGSPLPRN------AYFENFNRILTIPNVKVEDQGEYI 467
G V+L C G P W + G+ + +++ L++ +V+ D G Y
Sbjct: 17 GQPVKLNCSVEGMEEPDIQWVKDGAVVQNLDQLYIPVSEQHWIGFLSLKSVERSDAGRYW 76
Query: 468 CRASNDR-SALESSVTISIQAEPNFTIPLTDKHMDNQADLTWTCEAFGVPD-VTYSWFRN 525
C+ + + + V ++++ P FT+ D + A +CEA G P+ VT W+R
Sbjct: 77 CQVEDGGETEISQPVWLTVEGVPFFTVEPKDLAVPPNAPFQLSCEAVGPPEPVTIVWWRG 136
Query: 526 GELLNSETLPLEDQDRYFIQDNVLTIRYLNPERDPAMYQCRAKNQLKTRYS-SAQLRV 582
+ + + M+ C A N S +A + +
Sbjct: 137 TTKIGGPA------------PSPSVLNVTGVT-QSTMFSCEAHNLKGLASSRTATVHL 181
Score = 116 bits (292), Expect = 5e-30
Identities = 38/196 (19%), Positives = 73/196 (37%), Gaps = 23/196 (11%)
Query: 587 PSFKKRPLESETYAGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFE-----NG 641
P + +G V + C+ E +P W KDG ++ + + I G
Sbjct: 3 LKLMGAP--VKLTVSQGQPVKLNCSVEGMEEPDIQWVKDGAVVQNLDQLYIPVSEQHWIG 60
Query: 642 NLLISPVSRDDSGIYSCTATNVHGMDESKGRLIVLHGPSYYEQLPPKITIAAHRNLQLRC 701
L + V R D+G Y C + + S+ + + G ++ P + + + QL C
Sbjct: 61 FLSLKSVERSDAGRYWCQVEDGGETEISQPVWLTVEGVPFFTVEPKDLAVPPNAPFQLSC 120
Query: 702 SAH-TEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEITNASFADAGEYECVVK 760
A E + + W +IG + +L +T + + + C
Sbjct: 121 EAVGPPEPVTIV--WWRGTTKIGGPAPSPS----------VLNVTGVT--QSTMFSCEAH 166
Query: 761 STVGKISTKT-TVIVE 775
+ G S++T TV ++
Sbjct: 167 NLKGLASSRTATVHLQ 182
Score = 76.0 bits (187), Expect = 6e-16
Identities = 28/192 (14%), Positives = 53/192 (27%), Gaps = 30/192 (15%)
Query: 189 GPYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSD 248
G + P + + + L+C G P +W K+ ++ L
Sbjct: 2 GLKLMGAPVKLTVSQGQ-----PVKLNCSVEGMEEPDIQWVKDG--------AVVQNLDQ 48
Query: 249 KRFTLSG----GNLIINDPRQVEDRGSYHCKASNKFGSIISESVQLAFGFIGEFNLKRAP 304
+S G L + + D G Y C+ + + IS+ V L + F P
Sbjct: 49 LYIPVSEQHWIGFLSLKSVER-SDAGRYWCQVEDGGETEISQPVWLTVEGVPFF--TVEP 105
Query: 305 EIGNQNWGK-AMF-CDPPTNYPGVNYYWARDYFPNFVEEDKRVFVSYDGALYFSALEQID 362
+ C+ V W R ++ +
Sbjct: 106 KDLAVPPNAPFQLSCEAVGPPEPVTIVWWRG--------TTKIGGPAPSPSVLNVTGVTQ 157
Query: 363 AGNYSCNVQSKV 374
+ +SC +
Sbjct: 158 STMFSCEAHNLK 169
Score = 74.8 bits (184), Expect = 2e-15
Identities = 34/171 (19%), Positives = 55/171 (32%), Gaps = 38/171 (22%)
Query: 330 WARDYFPNFVEEDKRVFVS---YDGALYFSALEQIDAGNYSC----NVQSKVSDTGRNGP 382
W +D + + VS + G L ++E+ DAG Y C ++++S
Sbjct: 36 WVKDGAVVQNLDQLYIPVSEQHWIGFLSLKSVERSDAGRYWCQVEDGGETEISQPVW--- 92
Query: 383 FFPLKVFPHSNFQQLKFPNNFPKTFPEAPK-----AGDKVRLECVAFGYPVP-SYNWTRR 436
L V F PK +L C A G P P + W R
Sbjct: 93 ---LTV-------------EGVPFFTVEPKDLAVPPNAPFQLSCEAVGPPEPVTIVWWRG 136
Query: 437 GSPLPRNAYFENFNRILTIPNVKVEDQGEYICRASNDRSALES-SVTISIQ 486
+ + A + V + C A N + S + T+ +Q
Sbjct: 137 TTKIGGPA-----PSPSVLNVTGVTQSTMFSCEAHNLKGLASSRTATVHLQ 182
Score = 61.4 bits (149), Expect = 7e-11
Identities = 19/102 (18%), Positives = 34/102 (33%), Gaps = 22/102 (21%)
Query: 190 PYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNP-SYEWFKEDYVQDRLVANLIDPLSD 248
P+F +P D+ + LSC A G P P + W++ +
Sbjct: 99 PFFTVEPKDLAVPPN-----APFQLSCEAVGPPEPVTIVWWRGT-----------TKIGG 142
Query: 249 KRFTLSGGNLIINDPRQVEDRGSYHCKASNKFGSIISESVQL 290
+ ++N V + C+A N G S + +
Sbjct: 143 P----APSPSVLNVT-GVTQSTMFSCEAHNLKGLASSRTATV 179
>3u83_A Poliovirus receptor-related protein 1; nectin-1, hinge region
plasiticity, cell adhesion; HET: PG6; 2.50A {Homo
sapiens} PDB: 3alp_A* 3u82_B 3sku_E* 2l7j_A
Length = 331
Score = 124 bits (312), Expect = 3e-31
Identities = 42/311 (13%), Positives = 77/311 (24%), Gaps = 50/311 (16%)
Query: 505 DLTWTCEAFGVPD----VTYSWFRNGELL----------NSETLPLEDQDRYFI-----Q 545
D+ C +W ++ ++ ++R
Sbjct: 31 DVVLHCSFANPLPSVKITQVTWQKSTNGSKQNVAIYNPSMGVSVLAPYRERVEFLRPSFT 90
Query: 546 DNVLTIRYLNPERDPAMYQCRAKN-QLKTRYSSAQLRVLTLKPSFKKRPLESETYAG--- 601
D + + L E D +Y C R S L V+ KP+ ++ A
Sbjct: 91 DGTIRLSRLELE-DEGVYICEFATFPTGNRESQLNLTVMA-KPTNWIEGTQAVLRAKKGQ 148
Query: 602 EGGNVTIFCN-PEAAPKPKFVWKKDGNIIG-----SGGRRKIFENGNLLISPVSRDDSGI 655
+ + C P W+ + + P
Sbjct: 149 DDKVLVATCTSANGKPPSVVSWETRLKGEAEYQEIRNPNGTVTVISRYRLVPSREAHQQS 208
Query: 656 YSCTATNVHGMDESKGRLIVLHGPSYYEQLPPKITIAAHRNLQLRCSAHTEELLD----- 710
+C + L V + P + +++L C A D
Sbjct: 209 LACIVNYHMDRFKESLTLNVQYEPEVTIEGFDGNWYLQRMDVKLTCKA------DANPPA 262
Query: 711 VAYIWTHNGVRIGNMDLNELETPNINIDGGLLEITNASFADAGEYECVVKSTVGKISTKT 770
Y WT L + L +++ AG Y C + +G S +
Sbjct: 263 TEYHWTTLN--------GSLPKGVEAQNRTLFFKGPINYSLAGTYICEATNPIGTRSGQV 314
Query: 771 TVIVEGPPGLP 781
V + L
Sbjct: 315 EVNITEAAALE 325
Score = 114 bits (287), Expect = 6e-28
Identities = 47/335 (14%), Positives = 87/335 (25%), Gaps = 46/335 (13%)
Query: 190 PYFIKQPTDVVFDLSKRSILNDITLSC-YAGGYPNPSY---EWFKEDYVQDRLVANL--- 242
++ + + D+ L C +A P+ W K + VA
Sbjct: 15 SQVVQVNDSMYGFIGT-----DVVLHCSFANPLPSVKITQVTWQKSTNGSKQNVAIYNPS 69
Query: 243 ----IDPLSDKRFTLSG-----GNLIINDPRQVEDRGSYHCKASNKFGSIISESVQL--- 290
+ +R G + ++ ++ED G Y C+ + + L
Sbjct: 70 MGVSVLAPYRERVEFLRPSFTDGTIRLSR-LELEDEGVYICEFATFPTGNRESQLNLTVM 128
Query: 291 --AFGFIGEFNLKRAPEIGNQNWGKAMFCDPPTNYPGVNYYWARDYFPNFVEE---DKRV 345
+I + G + C P W + +
Sbjct: 129 AKPTNWIEGTQAVLRAKKGQDDKVLVATCTSANGKPPSVVSWETRLKGEAEYQEIRNPNG 188
Query: 346 FVSYDGALYFSALEQIDAGNYSCNVQSKVSDTGRNGPFFPLKVF--PHSNFQQLKFPNNF 403
V+ + + +C V + + L V P +
Sbjct: 189 TVTVISRYRLVPSREAHQQSLACIVNYHMDRFKES---LTLNVQYEPEVTIEGFD----- 240
Query: 404 PKTFPEAPKAGDKVRLECVAFGYPVPS-YNWTRRGSPLPRNAYFENFNRILTIPNVKVED 462
V+L C A P + Y+WT LP+ +N + +
Sbjct: 241 ----GNWYLQRMDVKLTCKADANPPATEYHWTTLNGSLPKGVEAQN-RTLFFKGPINYSL 295
Query: 463 QGEYICRASNDRSALESSVTISIQAEPNFTIPLTD 497
G YIC A+N V ++I
Sbjct: 296 AGTYICEATNPIGTRSGQVEVNITEAAALEHHHHH 330
Score = 109 bits (273), Expect = 4e-26
Identities = 47/253 (18%), Positives = 72/253 (28%), Gaps = 24/253 (9%)
Query: 350 DGALYFSALEQIDAGNYSCNVQSKVSDTGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPE 409
DG + S LE D G Y C + TG L V +
Sbjct: 91 DGTIRLSRLELEDEGVYICEFAT--FPTGNRESQLNLTVMAKPTNWIEGTQ---AVLRAK 145
Query: 410 APKAGDKVRLEC-VAFGYPVPSYNWTRRGSPLPRNAYFENFNR------ILTIPNVKVED 462
+ + C A G P +W R N N + +
Sbjct: 146 KGQDDKVLVATCTSANGKPPSVVSWETRLKGEAEYQEIRNPNGTVTVISRYRLVPSREAH 205
Query: 463 QGEYICRASNDRSALESSVTISIQAEPNFTI-PLTDKHMDNQADLTWTCEAFGVPDVT-Y 520
Q C + + S+T+++Q EP TI + D+ TC+A P T Y
Sbjct: 206 QQSLACIVNYHMDRFKESLTLNVQYEPEVTIEGFDGNWYLQRMDVKLTCKADANPPATEY 265
Query: 521 SWFRNGELLNSETLPLEDQDRYFIQDNVLTIRYLNPERDPAMYQCRAKNQLKTRYSSAQL 580
W L Q+ L + Y C A N + TR ++
Sbjct: 266 HWTTLNGSLPK---------GVEAQNRTLFFKGPINYSLAGTYICEATNPIGTRSGQVEV 316
Query: 581 RVLTLKPSFKKRP 593
+ + +
Sbjct: 317 NITE-AAALEHHH 328
Score = 44.0 bits (103), Expect = 2e-04
Identities = 15/123 (12%), Positives = 31/123 (25%), Gaps = 18/123 (14%)
Query: 677 HGPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAY--IWTHNGVRIGNMDLNELETPN 734
PS Q+ + ++ L CS W + +
Sbjct: 12 RDPSQVVQVNDSMYGFIGTDVVLHCSFANPLPSVKITQVTWQKSTNGSKQNVAIYNPSMG 71
Query: 735 INIDG---------------GLLEITNASFADAGEYECVVKST-VGKISTKTTVIVEGPP 778
+++ G + ++ D G Y C + G ++ + V P
Sbjct: 72 VSVLAPYRERVEFLRPSFTDGTIRLSRLELEDEGVYICEFATFPTGNRESQLNLTVMAKP 131
Query: 779 GLP 781
Sbjct: 132 TNW 134
>4dep_C Interleukin-1 receptor accessory protein; B-trefoil,
immunoglobulin, immune system, extracellular; HET: NAG;
3.10A {Homo sapiens} PDB: 3o4o_B*
Length = 349
Score = 122 bits (307), Expect = 2e-30
Identities = 38/336 (11%), Positives = 77/336 (22%), Gaps = 71/336 (21%)
Query: 413 AGDKVRLECVAF-----------GYPVPSYNWTRRGSPLPR---NAYFENFNRI------ 452
+ R++C F + W + NRI
Sbjct: 21 EDEPARIKCPLFEHFLKFNYSTAHSAGLTLIWYWTRQDRDLEEPINFRLPENRISKEKDV 80
Query: 453 LTIPNVKVEDQGEYICRASNDRSALESSVTISIQAEPNFTIPLTDKHMDNQADL------ 506
L + D G Y C N + + + + + + +
Sbjct: 81 LWFRPTLLNDTGNYTCMLRNTTYCSKVAFPLEVVQKDSCFNSPMKLPVHKLYIEYGIQRI 140
Query: 507 ---TWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQDNVLTIRYLNPERDPAMY 563
T +W+ +++ + + L+ + Y
Sbjct: 141 TCPNVDGYFPSSVKPTITWYMGCY-------KIQNFNNVIPEGMNLSFLIALIS-NNGNY 192
Query: 564 QCRAK----NQLKTRYSSAQLRVL----TLKPSFKKRPLESETY-AGEGGNVTIFCN--- 611
C + + ++V+ P P + Y G + I C
Sbjct: 193 TCVVTYPENGRTFHLTRTLTVKVVGSPKNAVPPVIHSPNDHVVYEKEPGEELLIPCTVYF 252
Query: 612 -PEAAPKPKFVWKKDGNIIGSGGRRKIFE-------------NGNLLISPVSRDD-SGIY 656
+ + W DG L I V+ +D Y
Sbjct: 253 SFLMDSRNEVWWTIDGKKPDDITIDVTINESISHSRTEDETRTQILSIKKVTSEDLKRSY 312
Query: 657 SCTATNVHGMDESKGRLIVLHGPSYYEQLPPKITIA 692
C A + G ++ + P+ T+
Sbjct: 313 VCHARSAKGEVAKAAKVKQ-------KVPAPRYTVE 341
Score = 122 bits (306), Expect = 3e-30
Identities = 43/309 (13%), Positives = 91/309 (29%), Gaps = 39/309 (12%)
Query: 316 FCDPPTNYPGVNYYWARDYFPNFVEE-------DKRVFVSYDGALYFSALEQIDAGNYSC 368
F + G+ W +EE + R+ L+F D GNY+C
Sbjct: 38 FNYSTAHSAGLTLIWYWTRQDRDLEEPINFRLPENRISKE-KDVLWFRPTLLNDTGNYTC 96
Query: 369 NVQSKVSDTGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPEAPKAGDKVR---LECVAFG 425
+++ T + FPL+V P P ++ ++
Sbjct: 97 MLRN---TTYCSKVAFPLEVVQKD--SCFNSPMKLPVHKLYIEYGIQRITCPNVDGYFPS 151
Query: 426 YPVPSYNWTRRGSPLPRNAYFENFNRILTIPNVKVEDQGEYICRASND----RSALESSV 481
P+ W + L+ + + G Y C + L ++
Sbjct: 152 SVKPTITWYMGCYKIQNFNNVIPEGMNLSFLIALISNNGNYTCVVTYPENGRTFHLTRTL 211
Query: 482 TISIQAEPNFTIPLTDKHMDNQ--------ADLTWTCEAF----GVPDVTYSWFRNGELL 529
T+ + P +P ++ +L C + W +G+
Sbjct: 212 TVKVVGSPKNAVPPVIHSPNDHVVYEKEPGEELLIPCTVYFSFLMDSRNEVWWTIDGKKP 271
Query: 530 NSETLPLEDQDRYFIQDN-------VLTIRYLNPERDPAMYQCRAKNQLKTRYSSAQLRV 582
+ T+ + + +L+I+ + E Y C A++ +A+++
Sbjct: 272 DDITIDVTINESISHSRTEDETRTQILSIKKVTSEDLKRSYVCHARSAKGEVAKAAKVKQ 331
Query: 583 LTLKPSFKK 591
P +
Sbjct: 332 KVPAPRYTV 340
Score = 107 bits (267), Expect = 4e-25
Identities = 45/325 (13%), Positives = 88/325 (27%), Gaps = 37/325 (11%)
Query: 201 FDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGNLII 260
+ + + + + W+ +D + L + R + L
Sbjct: 25 ARIKCPLFEHFLKFNYSTAHSAGLTLIWYWTRQDRDLEE-PINFRLPENRISKEKDVLWF 83
Query: 261 NDPRQVEDRGSYHCKASNKFGSI-------ISESVQLAFGFIGEFNLKRAPEIGNQNWGK 313
P + D G+Y C N + + + K E G Q
Sbjct: 84 R-PTLLNDTGNYTCMLRNTTYCSKVAFPLEVVQKDSCFNSPMKLPVHKLYIEYGIQRITC 142
Query: 314 AMFCDPPTNYPGVNYYWARDYFPNFVEEDKRVFVSYDGALYFSALEQIDAGNYSCNVQSK 373
+ W + ++ + L F + GNY+C V
Sbjct: 143 PNVDGYFPSSVKPTITWYMGCYK---IQNFNNVIPEGMNLSFLIALISNNGNYTCVV--T 197
Query: 374 VSDTGRNGPF---FPLKVFPHSNFQQLKFPNNFPKTFPEAPKAGDKVRLECVAF----GY 426
+ GR +KV ++ + G+++ + C +
Sbjct: 198 YPENGRTFHLTRTLTVKVVGSPKNAVPPVIHSPNDHVVYEKEPGEELLIPCTVYFSFLMD 257
Query: 427 PVPSYNWTRRGSPL--------------PRNAYFENFNRILTIPNVKVEDQG-EYICRAS 471
WT G E +IL+I V ED Y+C A
Sbjct: 258 SRNEVWWTIDGKKPDDITIDVTINESISHSRTEDETRTQILSIKKVTSEDLKRSYVCHAR 317
Query: 472 NDRSALESSVTISIQA-EPNFTIPL 495
+ + + + + + P +T+ L
Sbjct: 318 SAKGEVAKAAKVKQKVPAPRYTVEL 342
Score = 91.5 bits (226), Expect = 8e-20
Identities = 50/326 (15%), Positives = 88/326 (26%), Gaps = 68/326 (20%)
Query: 602 EGGNVTIFCNPEAAPKPKFVWKKDGN--------IIGSGGRRKIFENGNLLISPVSRDDS 653
+ + + +W R E L P +D+
Sbjct: 32 FEHFLKFNYSTAHSAGLTLIWYWTRQDRDLEEPINFRLPENRISKEKDVLWFRPTLLNDT 91
Query: 654 GIYSCTATNVHGMDESKGRLIVLHGPSYY---EQLPPKITIAAHRNLQLRC---SAHTEE 707
G Y+C N + L V+ S + +LP + ++ C +
Sbjct: 92 GNYTCMLRNTTYCSKVAFPLEVVQKDSCFNSPMKLPVHKLYIEYGIQRITCPNVDGYFPS 151
Query: 708 LLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEITNASFADAGEYECVVKSTV---- 763
+ W +I N N+ +G L A ++ G Y CVV
Sbjct: 152 SVKPTITWYMGCYKIQN-------FNNVIPEGMNLSFLIALISNNGNYTCVVTYPENGRT 204
Query: 764 GKISTKTTVIVEGPP--------GLPGGVQVVEVH-----------------KTSATIQW 798
++ TV V G P P V E + + W
Sbjct: 205 FHLTRTLTVKVVGSPKNAVPPVIHSPNDHVVYEKEPGEELLIPCTVYFSFLMDSRNEVWW 264
Query: 799 TDGATNGRPITHYKIIARTNWNSTWFNVSEHVIGKEVDRYTGRKEASIENVLVPWSTYEF 858
T +G+ I ++E + + T + SI+ V +
Sbjct: 265 TI---DGKKPDDITIDVT---------INESISHSRTEDETRTQILSIKKVTSEDLKRSY 312
Query: 859 KVIAGNELGYGEPS------SPSPQY 878
A + G + P+P+Y
Sbjct: 313 VCHARSAKGEVAKAAKVKQKVPAPRY 338
Score = 61.4 bits (148), Expect = 4e-10
Identities = 27/218 (12%), Positives = 51/218 (23%), Gaps = 41/218 (18%)
Query: 185 KIPRGPYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLID 244
K +K P ++ + + Y P+ W+ Y
Sbjct: 116 KDSCFNSPMKLPVHKLYIEYGIQRITCPNVDGYFPSSVKPTITWYMGCYKIQN------- 168
Query: 245 PLSDKRFTLSGGNLIINDPRQVEDRGSYHCKASNKFGSI---ISESVQL---------AF 292
G NL + + G+Y C + ++ ++ +
Sbjct: 169 ---FNNVIPEGMNLSFLIA-LISNNGNYTCVVTYPENGRTFHLTRTLTVKVVGSPKNAVP 224
Query: 293 GFIGEFNLKRAPEIGNQNWG----KAMFCDPPTNYPGVNYYWARD-------YFPNFVEE 341
I N E F + V +W D + E
Sbjct: 225 PVIHSPNDHVVYEKEPGEELLIPCTVYFSFLMDSRNEV--WWTIDGKKPDDITIDVTINE 282
Query: 342 DKRVFVSYDGA----LYFSALEQID-AGNYSCNVQSKV 374
+ D L + D +Y C+ +S
Sbjct: 283 SISHSRTEDETRTQILSIKKVTSEDLKRSYVCHARSAK 320
>2x1w_L Vascular endothelial growth factor receptor 2; hormone-signaling
protein complex, angiogenesis, glycoprotein, HOST-virus
interaction, membrane; HET: NAG BMA; 2.70A {Homo
sapiens} PDB: 2x1x_R*
Length = 213
Score = 115 bits (289), Expect = 3e-29
Identities = 35/203 (17%), Positives = 62/203 (30%), Gaps = 12/203 (5%)
Query: 587 PSFKKRPLESETYAGEGGNVTIFCNPEAAPKPKFVW--KKDGNIIGSGGRRKIFENGN-L 643
S + + V I C + + G R +++
Sbjct: 8 ASVSDQHGVVYITENKNKTVVIPCLG-SISNLNVSLCARYPEKRFVPDGNRISWDSKKGF 66
Query: 644 LISPVSRDDSGIYSCTATNVHGMDESKGRLIVLHGPSYYE---QLPPKITIAAHRNLQLR 700
I +G+ C A +S ++V+ G Y+ I ++ L L
Sbjct: 67 TIPSYMISYAGMVFCEAKINDESYQSIMYIVVVVGYRIYDVVLSPSHGIELSVGEKLVLN 126
Query: 701 CSAHTEELLDVAYIWTHNGVRIGNM-----DLNELETPNINIDGGLLEITNASFADAGEY 755
C+A TE + + + W + + + DL + L I + +D G Y
Sbjct: 127 CTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLSTLTIDGVTRSDQGLY 186
Query: 756 ECVVKSTVGKISTKTTVIVEGPP 778
C S + T V V P
Sbjct: 187 TCAASSGLMTKKNSTFVRVHEDP 209
Score = 82.9 bits (204), Expect = 5e-18
Identities = 27/189 (14%), Positives = 51/189 (26%), Gaps = 19/189 (10%)
Query: 505 DLTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQDNVLTIRYLNPERDPAMYQ 564
+ C + ++ S + + + TI M
Sbjct: 26 TVVIPCLG-SISNLNVSLCARY---PEKRFVPDGNRISWDSKKGFTIPSYMI-SYAGMVF 80
Query: 565 CRAKNQLKTRYSSAQLRVLTLKPSFKKRPLES-ETYAGEGGNVTIFCNPEAAP--KPKFV 621
C AK ++ S + V+ + S G + + C F
Sbjct: 81 CEAKINDESYQSIMYIVVVVGYRIYDVVLSPSHGIELSVGEKLVLNCTARTELNVGIDFN 140
Query: 622 WKKDGNIIGSG-----------GRRKIFENGNLLISPVSRDDSGIYSCTATNVHGMDESK 670
W+ + G L I V+R D G+Y+C A++ ++
Sbjct: 141 WEYPSSKHQHKKLVNRDLKTQSGSEMKKFLSTLTIDGVTRSDQGLYTCAASSGLMTKKNS 200
Query: 671 GRLIVLHGP 679
+ V P
Sbjct: 201 TFVRVHEDP 209
Score = 78.7 bits (193), Expect = 1e-16
Identities = 29/203 (14%), Positives = 62/203 (30%), Gaps = 21/203 (10%)
Query: 397 LKFPNNFPKTFPEAPKAGDKVRLECVAFGYPVPSYNWT-----RRGSPLPRNAYFENFNR 451
+ ++ V + C+ + + N + +P ++
Sbjct: 7 IASVSDQHGVVYITENKNKTVVIPCLG---SISNLNVSLCARYPEKRFVPDGNRISWDSK 63
Query: 452 I-LTIPNVKVEDQGEYICRASNDRSALESSVTISIQAEPNFTIPLTDKHMDNQA----DL 506
TIP+ + G C A + + +S + I + + + L
Sbjct: 64 KGFTIPSYMISYAGMVFCEAKINDESYQSIMYIVVVVGYRIYDVVLSPSHGIELSVGEKL 123
Query: 507 TWTCEAFGVPD--VTYSWFRNGELLN-----SETLPLEDQDRYFIQDNVLTIRYLNPERD 559
C A + + ++W + L + + LTI + D
Sbjct: 124 VLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLSTLTIDGVTRS-D 182
Query: 560 PAMYQCRAKNQLKTRYSSAQLRV 582
+Y C A + L T+ +S +RV
Sbjct: 183 QGLYTCAASSGLMTKKNSTFVRV 205
Score = 72.9 bits (178), Expect = 1e-14
Identities = 26/186 (13%), Positives = 45/186 (24%), Gaps = 32/186 (17%)
Query: 324 PGVNYYWARDYFPNFVEEDKRVFVSYDG-ALYFSALEQIDAGNYSCNVQSKVSDTGRNGP 382
+N Y D + AG C +
Sbjct: 36 SNLNVSLCARYPEKRFVPDGNRISWDSKKGFTIPSYMISYAGMVFCEAKIND-------- 87
Query: 383 FFPLKVFPHSNFQQLKFPNNFPKTFPEAPKA-----GDKVRLECVAFGYPVPSYNWT--- 434
+ + + + G+K+ L C A ++
Sbjct: 88 ----ESYQSIMYIVVVVGYRIYDVVLSPSHGIELSVGEKLVLNCTARTELNVGIDFNWEY 143
Query: 435 -----------RRGSPLPRNAYFENFNRILTIPNVKVEDQGEYICRASNDRSALESSVTI 483
R + + F LTI V DQG Y C AS+ ++S +
Sbjct: 144 PSSKHQHKKLVNRDLKTQSGSEMKKFLSTLTIDGVTRSDQGLYTCAASSGLMTKKNSTFV 203
Query: 484 SIQAEP 489
+ +P
Sbjct: 204 RVHEDP 209
Score = 53.6 bits (128), Expect = 5e-08
Identities = 26/156 (16%), Positives = 45/156 (28%), Gaps = 21/156 (13%)
Query: 141 RWGF--ERVTGMEPLLFICEASIQKLHYLLNDDRTYQYGMDIENPDKIPRGPYFIKQPTD 198
+ GF + CEA +D +YQ M I +
Sbjct: 63 KKGFTIPSYMISYAGMVFCEAK--------INDESYQSIMYIVVVVGYRIYDVVLSPSHG 114
Query: 199 VVFDLSKRSILNDITLSCYAGGYPNPSYEWF----KEDYVQDRLVANLIDPLSDKRFTLS 254
+ + + L+C A N ++ + +LV + S
Sbjct: 115 IELSVG-----EKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKF 169
Query: 255 GGNLIINDPRQVEDRGSYHCKASNKFGSIISESVQL 290
L I+ D+G Y C AS+ + S +
Sbjct: 170 LSTLTIDGV-TRSDQGLYTCAASSGLMT-KKNSTFV 203
Score = 46.3 bits (109), Expect = 1e-05
Identities = 20/177 (11%), Positives = 45/177 (25%), Gaps = 21/177 (11%)
Query: 211 DITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVEDRG 270
+ + C N + R + + G
Sbjct: 26 TVVIPCLGSI-SNLNVSLCARY-------PEKRFVPDGNRISWDSKKGFTIPSYMISYAG 77
Query: 271 SYHCKASNKFGSIISESVQLAFGFIGEFNLKRAPEIGNQ-NWGKA--MFC----DPPTN- 322
C+A S S + +++ +P G + + G+ + C +
Sbjct: 78 MVFCEAKINDESYQSIMYIVVVVGYRIYDVVLSPSHGIELSVGEKLVLNCTARTELNVGI 137
Query: 323 -----YPGVNYYWARDYFPNFVEEDKRVFVSYDGALYFSALEQIDAGNYSCNVQSKV 374
YP + + + + + L + + D G Y+C S +
Sbjct: 138 DFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLSTLTIDGVTRSDQGLYTCAASSGL 194
Score = 32.1 bits (72), Expect = 0.60
Identities = 6/40 (15%), Positives = 12/40 (30%)
Query: 742 LEITNASFADAGEYECVVKSTVGKISTKTTVIVEGPPGLP 781
I + + AG C K + ++V +
Sbjct: 66 FTIPSYMISYAGMVFCEAKINDESYQSIMYIVVVVGYRIY 105
>2c5d_C AXL oncogene, tyrosine-protein kinase receptor UFO; signaling
protein/receptor, growth regulation/complex, vitamin
K-dependent protein; HET: NAG; 3.3A {Homo sapiens}
Length = 195
Score = 113 bits (284), Expect = 7e-29
Identities = 40/205 (19%), Positives = 65/205 (31%), Gaps = 26/205 (12%)
Query: 587 PSFKKRPLESETYAGEGGNVTIFCNPEA-APKPKFVWKKDGNII------------GSGG 633
F P G T+ C + P+ W +DG I+ G
Sbjct: 3 SPFVGNP--GNITGARGLTGTLRCQLQVQGEPPEVHWLRDGQILELADSTQTQVPLGEDE 60
Query: 634 RRKIFENGNLLISPVSRDDSGIYSCTATNVHGMDESKGRLIVLHGPSYYEQLPPKITIAA 693
+ L I+ + D+G Y C H S+ + L G Y+ + P T+AA
Sbjct: 61 QDDWIVVSQLRITSLQLSDTGQYQCLVFLGHQTFVSQPGYVGLEGLPYFLEEPEDRTVAA 120
Query: 694 HRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEITNASFADAG 753
+ L C A V +W + V L T + L + +
Sbjct: 121 NTPFNLSCQA-QGPPEPVDLLWLQDAV--------PLATAPGHGPQRSLHVPGLN--KTS 169
Query: 754 EYECVVKSTVGKISTKTTVIVEGPP 778
+ C + G +++T I P
Sbjct: 170 SFSCEAHNAKGVTTSRTATITVLPQ 194
Score = 109 bits (274), Expect = 2e-27
Identities = 37/202 (18%), Positives = 59/202 (29%), Gaps = 33/202 (16%)
Query: 404 PKTFPEAPK-----AGDKVRLECVAF-GYPVPSYNWTRRGSPLPRNA------------- 444
F P G L C P +W R G L
Sbjct: 2 ESPFVGNPGNITGARGLTGTLRCQLQVQGEPPEVHWLRDGQILELADSTQTQVPLGEDEQ 61
Query: 445 YFENFNRILTIPNVKVEDQGEYICRASNDRSALES-SVTISIQAEPNFTIPLTDKHMDNQ 503
L I ++++ D G+Y C S + ++ P F D+ +
Sbjct: 62 DDWIVVSQLRITSLQLSDTGQYQCLVFLGHQTFVSQPGYVGLEGLPYFLEEPEDRTVAAN 121
Query: 504 ADLTWTCEAFGVPD-VTYSWFRNGELLNSETLPLEDQDRYFIQDNVLTIRYLNPERDPAM 562
+C+A G P+ V W ++ L + L + LN +
Sbjct: 122 TPFNLSCQAQGPPEPVDLLWLQDAVPLAT--------APGHGPQRSLHVPGLN---KTSS 170
Query: 563 YQCRAKNQLKTRYS-SAQLRVL 583
+ C A N S +A + VL
Sbjct: 171 FSCEAHNAKGVTTSRTATITVL 192
Score = 106 bits (267), Expect = 2e-26
Identities = 38/210 (18%), Positives = 68/210 (32%), Gaps = 25/210 (11%)
Query: 488 EPNFTIPLTDKHMDNQADLTWTCEAF-GVPDVTYSWFRNGELLNSET-----LPLEDQDR 541
E F + T C+ W R+G++L +PL + ++
Sbjct: 2 ESPFVGNPGNITGARGLTGTLRCQLQVQGEPPEVHWLRDGQILELADSTQTQVPLGEDEQ 61
Query: 542 YFIQDN-VLTIRYLNPERDPAMYQCRAKNQLKTRYS-SAQLRVLTLKPSFKKRPLESETY 599
L I L D YQC +T S + + L P F + P +
Sbjct: 62 DDWIVVSQLRITSLQLS-DTGQYQCLVFLGHQTFVSQPGYVGLEGL-PYFLEEP--EDRT 117
Query: 600 AGEGGNVTIFCNPEAAPKPKFV-WKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSC 658
+ C + P+P + W +D + + +L + ++ + +SC
Sbjct: 118 VAANTPFNLSCQAQGPPEPVDLLWLQDAVPLATAPGH--GPQRSLHVPGLN--KTSSFSC 173
Query: 659 TATNVHGMDESKGRLIVLHGPSYYEQLPPK 688
A N G+ S+ I LP +
Sbjct: 174 EAHNAKGVTTSRTATIT--------VLPQQ 195
Score = 71.1 bits (174), Expect = 4e-14
Identities = 29/195 (14%), Positives = 53/195 (27%), Gaps = 28/195 (14%)
Query: 190 PYFIKQPTDVVFDLSKRSILNDITLSC-YAGGYPNPSYEWFKED---YVQDRLVANLIDP 245
F+ P ++ TL C P W ++ + D +
Sbjct: 3 SPFVGNPGNITGARGL-----TGTLRCQLQVQGEPPEVHWLRDGQILELADSTQTQVPLG 57
Query: 246 LSDKRFTLSGGNLIINDPRQVEDRGSYHCKASNKFGSIISESVQLAFGFIGEFNLKRAPE 305
++ + L I + D G Y C + +S+ + + F PE
Sbjct: 58 EDEQDDWIVVSQLRITSLQL-SDTGQYQCLVFLGHQTFVSQPGYVGLEGLPYF--LEEPE 114
Query: 306 IGNQNWGK-AMF-C----DPPTNYPGVNYYWARDYFPNFVEEDKRVFVSYDGALYFSALE 359
C P P V+ W +D P + +L+ L
Sbjct: 115 DRTVAANTPFNLSCQAQGPPE---P-VDLLWLQDAVP--LATAPGHGP--QRSLHVPGLN 166
Query: 360 QIDAGNYSCNVQSKV 374
++SC +
Sbjct: 167 --KTSSFSCEAHNAK 179
Score = 67.6 bits (165), Expect = 7e-13
Identities = 22/102 (21%), Positives = 36/102 (35%), Gaps = 20/102 (19%)
Query: 190 PYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNP-SYEWFKEDYVQDRLVANLIDPLSD 248
PYF+++P D + LSC A G P P W ++ PL+
Sbjct: 107 PYFLEEPEDRTVAAN-----TPFNLSCQAQGPPEPVDLLWLQDA-----------VPLAT 150
Query: 249 KRFTLSGGNLIINDPRQVEDRGSYHCKASNKFGSIISESVQL 290
+L + + S+ C+A N G S + +
Sbjct: 151 APGHGPQRSLHVP---GLNKTSSFSCEAHNAKGVTTSRTATI 189
>3rbs_A Myomesin-1; immunoglobulin C-SET domain, contractIle protein; 1.85A
{Homo sapiens}
Length = 207
Score = 113 bits (285), Expect = 9e-29
Identities = 37/215 (17%), Positives = 67/215 (31%), Gaps = 35/215 (16%)
Query: 587 PSFKKRPLESETYAGEGGNVTIFCNPEAA-PKPKFVWKKDGNIIGSGGRRKIFENGN--- 642
F K L E E G V + E K + + I G + K+ + N
Sbjct: 3 DPFTKSELAVE--ILEKGQVRFWMQAEKLSGNAKVNYIFNEKEIFEGPKYKMHIDRNTGI 60
Query: 643 --LLISPVSRDDSGIYSCTATNVHGMDESKGRLIVLHGPSYYEQL--------------- 685
+ + + +D G Y+ + + S L+ ++
Sbjct: 61 IEMFMEKLQDEDEGTYTFQLQDGKATNHSTVVLVGDVFKKLQKEAEFQRQEWIRKQGPHF 120
Query: 686 --PPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGL-- 741
+ N+ L+C + +W + I + G+
Sbjct: 121 VEYLSWEVTGECNVLLKCKV-ANIKKETHIVWYKDEREI-------SVDEKHDFKDGICT 172
Query: 742 LEITNASFADAGEYECVVKSTVGKISTKTTVIVEG 776
L IT S DAG YE ++K GK ++ ++ E
Sbjct: 173 LLITEFSKKDAGIYEVILKDDRGKDKSRLKLVDEA 207
Score = 108 bits (270), Expect = 9e-27
Identities = 36/211 (17%), Positives = 69/211 (32%), Gaps = 32/211 (15%)
Query: 489 PNFTIPLTDKHMDNQADLT-WTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQ-- 545
FT + + + W + ++ N + + + +Y +
Sbjct: 3 DPFTKSELAVEILEKGQVRFWMQAEKLSGNAKVNYIFNEK-------EIFEGPKYKMHID 55
Query: 546 DNV----LTIRYLNPERDPAMYQCRAKNQLKTRYSSAQLRVLTLKPSFKKRPLESETYAG 601
N + + L E D Y + ++ T +S+ L K K+ + + +
Sbjct: 56 RNTGIIEMFMEKLQDE-DEGTYTFQLQDGKATNHSTVVLVGDVFKKLQKEAEFQRQEWIR 114
Query: 602 ---------------EGGNVTIFCNPEAAPKP-KFVWKKDGNIIGSGGRRKIFE-NGNLL 644
NV + C K VW KD I + + LL
Sbjct: 115 KQGPHFVEYLSWEVTGECNVLLKCKVANIKKETHIVWYKDEREISVDEKHDFKDGICTLL 174
Query: 645 ISPVSRDDSGIYSCTATNVHGMDESKGRLIV 675
I+ S+ D+GIY + G D+S+ +L+
Sbjct: 175 ITEFSKKDAGIYEVILKDDRGKDKSRLKLVD 205
Score = 99.2 bits (247), Expect = 9e-24
Identities = 22/202 (10%), Positives = 60/202 (29%), Gaps = 37/202 (18%)
Query: 409 EAPKAGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYF------ENFNRILTIPNVKVED 462
E + G N+ + + + + ++ ED
Sbjct: 13 EILEKGQVRFWMQAEKLSGNAKVNYIFNEKEIFEGPKYKMHIDRNTGIIEMFMEKLQDED 72
Query: 463 QGEYICRASNDRSALESSVTISIQA-------------------EPNFTIPLTDKHMDNQ 503
+G Y + + ++ S+V + P+F L+ +
Sbjct: 73 EGTYTFQLQDGKATNHSTVVLVGDVFKKLQKEAEFQRQEWIRKQGPHFVEYLSWEVTGEC 132
Query: 504 ADLTWTCEAFGV-PDVTYSWFRNGELLNSETLPLEDQDRYFIQDNV--LTIRYLNPERDP 560
++ C+ + + W+++ + +++ +D + L I + + D
Sbjct: 133 -NVLLKCKVANIKKETHIVWYKDER-------EISVDEKHDFKDGICTLLITEFSKK-DA 183
Query: 561 AMYQCRAKNQLKTRYSSAQLRV 582
+Y+ K+ S +L
Sbjct: 184 GIYEVILKDDRGKDKSRLKLVD 205
Score = 81.1 bits (200), Expect = 2e-17
Identities = 28/192 (14%), Positives = 59/192 (30%), Gaps = 18/192 (9%)
Query: 312 GKAMF-CDPPTNYPGVNYYWARDYFPNFVEEDKRVFVSYDG-----ALYFSALEQIDAGN 365
G+ F + + + E + + D ++ L+ D G
Sbjct: 18 GQVRFWMQAEKLSGNAKVNYIFNEKE--IFEGPKYKMHIDRNTGIIEMFMEKLQDEDEGT 75
Query: 366 YSC---NVQSKVSDTGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPEAPKA----GDKVR 418
Y+ + ++ T K+ + FQ+ ++ F E V
Sbjct: 76 YTFQLQDGKATNHSTVVLVGDVFKKLQKEAEFQRQEWIRKQGPHFVEYLSWEVTGECNVL 135
Query: 419 LECVAFGYPVPS-YNWTRRGSPLPRNAY--FENFNRILTIPNVKVEDQGEYICRASNDRS 475
L+C + W + + + F++ L I +D G Y +DR
Sbjct: 136 LKCKVANIKKETHIVWYKDEREISVDEKHDFKDGICTLLITEFSKKDAGIYEVILKDDRG 195
Query: 476 ALESSVTISIQA 487
+S + + +A
Sbjct: 196 KDKSRLKLVDEA 207
Score = 54.2 bits (130), Expect = 3e-08
Identities = 26/206 (12%), Positives = 50/206 (24%), Gaps = 35/206 (16%)
Query: 190 PYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDK 249
F K V + N + + I
Sbjct: 3 DPFTKSELAVEILEKGQVRF----WMQAEKLSGNAKVNYIFNE--------KEIFEGPKY 50
Query: 250 RFTLSGGN----LIINDPRQVEDRGSYHCKASNKFGSIISESVQLAFGFI---------- 295
+ + + + Q ED G+Y + + + S V + F
Sbjct: 51 KMHIDRNTGIIEMFMEKL-QDEDEGTYTFQLQDGKATNHSTVVLVGDVFKKLQKEAEFQR 109
Query: 296 GEFNLKRAPEIGNQNWGKA-------MFCDPPTNYPGVNYYWARDYFPNFVEEDKRVFVS 348
E+ K+ P + + C + W +D ++K F
Sbjct: 110 QEWIRKQGPHFVEYLSWEVTGECNVLLKCKVANIKKETHIVWYKDERE-ISVDEKHDFKD 168
Query: 349 YDGALYFSALEQIDAGNYSCNVQSKV 374
L + + DAG Y ++
Sbjct: 169 GICTLLITEFSKKDAGIYEVILKDDR 194
Score = 53.4 bits (128), Expect = 6e-08
Identities = 19/113 (16%), Positives = 39/113 (34%), Gaps = 21/113 (18%)
Query: 181 ENPDKIPRGPYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPS-YEWFKEDYVQDRLV 239
+GP+F++ + V ++ L C + W+K++
Sbjct: 109 RQEWIRKQGPHFVEYLSWEVTGEC------NVLLKCKVANIKKETHIVWYKDE------- 155
Query: 240 ANLIDPLSDKRFTLSGGN--LIINDPRQVEDRGSYHCKASNKFGSIISESVQL 290
I D++ G L+I + + +D G Y + G S ++L
Sbjct: 156 -REISV--DEKHDFKDGICTLLITEFSK-KDAGIYEVILKDDRGKDKS-RLKL 203
Score = 42.6 bits (100), Expect = 2e-04
Identities = 7/71 (9%), Positives = 20/71 (28%), Gaps = 5/71 (7%)
Query: 713 YIWTHNGVRIGNMDLNELETPNINIDGGL--LEITNASFADAGEYECVVKSTVGKISTKT 770
+ N I ++ + G+ + + D G Y ++ +
Sbjct: 35 VNYIFNEKEIFEGPKYKMHIDR---NTGIIEMFMEKLQDEDEGTYTFQLQDGKATNHSTV 91
Query: 771 TVIVEGPPGLP 781
++ + L
Sbjct: 92 VLVGDVFKKLQ 102
>3b5h_A Cervical EMMPRIN, HAB18G/CD147; IG-like domain, cell invasion;
2.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4
Length = 184
Score = 112 bits (281), Expect = 2e-28
Identities = 35/178 (19%), Positives = 65/178 (36%), Gaps = 14/178 (7%)
Query: 414 GDKVRLECVAFGYPVP--SYNWTRRGSPLPRNAYFENFNRILTIPNVKVEDQGEYICRAS 471
G K+ L C + W + G L + + + GEY C
Sbjct: 13 GSKILLTCSLNDSATEVTGHRWLKGGVVLKED---ALPGQKTEFKVDSDDQWGEYSCVFL 69
Query: 472 NDRSALESSVTISIQAEPNFTIPLTDKHMDNQADLTWTCEAFGVPDVT-YSWFRNGELLN 530
+ + I + P + +H++ C++ VP VT ++W++ +
Sbjct: 70 PEPMG---TANIQLHGPPRVKAVKSSEHINEGETAMLVCKSESVPPVTDWAWYKITDS-E 125
Query: 531 SETLPLEDQDRYFIQDN----VLTIRYLNPERDPAMYQCRAKNQLKTRYSSAQLRVLT 584
+ L + R+F+ + L I LN E DP Y+C + + + LRV +
Sbjct: 126 DKALMNGSESRFFVSSSQGRSELHIENLNMEADPGQYRCNGTSSKGSDQAIITLRVRS 183
Score = 97.0 bits (241), Expect = 3e-23
Identities = 34/184 (18%), Positives = 59/184 (32%), Gaps = 30/184 (16%)
Query: 505 DLTWTCEAFG--VPDVTYSWFRNGELLNSETLPLEDQDRYFIQDNVLTIRYLNPERDPAM 562
+ TC + W + G +L + LP + + +
Sbjct: 15 KILLTCSLNDSATEVTGHRWLKGGVVLKEDALP----------GQKTEFKVDSDD-QWGE 63
Query: 563 YQCRAKNQLKTRYSSAQLRVLTLKPSFKKRPLESETYAGEGGNVTIFCNPEAAPKP-KFV 621
Y C + +A +++ P K S + EG + C E+ P +
Sbjct: 64 YSCVFLPE---PMGTANIQLHG-PPRVKAVK--SSEHINEGETAMLVCKSESVPPVTDWA 117
Query: 622 WKKDGNII------GSGGRRKIFENGN---LLISPVSR-DDSGIYSCTATNVHGMDESKG 671
W K + GS R + + L I ++ D G Y C T+ G D++
Sbjct: 118 WYKITDSEDKALMNGSESRFFVSSSQGRSELHIENLNMEADPGQYRCNGTSSKGSDQAII 177
Query: 672 RLIV 675
L V
Sbjct: 178 TLRV 181
Score = 92.0 bits (228), Expect = 2e-21
Identities = 34/183 (18%), Positives = 54/183 (29%), Gaps = 15/183 (8%)
Query: 598 TYAGEGGNVTIFCNPEAAPKPK--FVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGI 655
T G + + C+ + W K G ++ S D G
Sbjct: 8 TVEDLGSKILLTCSLNDSATEVTGHRWLKGGVVLKEDA----LPGQKTEFKVDSDDQWGE 63
Query: 656 YSCTATNVHGMDESKGRLIVLHGPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIW 715
YSC + I LHGP + + I L C + + + + W
Sbjct: 64 YSCVFLPEPMGTAN----IQLHGPPRVKAVKSSEHINEGETAMLVCKSESVPPV-TDWAW 118
Query: 716 THNGVRIGNMDLNELE---TPNINIDGGLLEITNASFA-DAGEYECVVKSTVGKISTKTT 771
+N E + + L I N + D G+Y C S+ G T
Sbjct: 119 YKITDSEDKALMNGSESRFFVSSSQGRSELHIENLNMEADPGQYRCNGTSSKGSDQAIIT 178
Query: 772 VIV 774
+ V
Sbjct: 179 LRV 181
Score = 68.9 bits (168), Expect = 2e-13
Identities = 27/175 (15%), Positives = 57/175 (32%), Gaps = 32/175 (18%)
Query: 324 PGVNYYWARDYFPNFVEEDKRVFVSYDGALYFSALEQIDAGNYSCNVQSKVSDTGRNGPF 383
+ W + ++ED F G YSC + T
Sbjct: 28 EVTGHRWLKGGVV--LKEDALP----GQKTEFKVDSDDQWGEYSCVFLPEPMGTAN---- 77
Query: 384 FPLKVFPHSNFQQLKFPNNFPKTFPEAPKAGDKVRLECVAFGYP-VPSYNWTRRGSPLPR 442
+++ + +K E G+ L C + P V + W + +
Sbjct: 78 --IQLHGPPRVKAVK--------SSEHINEGETAMLVCKSESVPPVTDWAWYKITDSEDK 127
Query: 443 NAYFENFNRI----------LTIPNVKVE-DQGEYICRASNDRSALESSVTISIQ 486
+ +R L I N+ +E D G+Y C ++ + + ++ +T+ ++
Sbjct: 128 ALMNGSESRFFVSSSQGRSELHIENLNMEADPGQYRCNGTSSKGSDQAIITLRVR 182
Score = 57.0 bits (137), Expect = 2e-09
Identities = 19/110 (17%), Positives = 36/110 (32%), Gaps = 13/110 (11%)
Query: 185 KIPRGPYFIKQPTDVVFDLSKRSILNDITLSCYAGGYP-NPSYEWFKEDYVQDRLVANLI 243
++ P + + + L C + P + W+K +D+ L+
Sbjct: 79 QLHGPPRVKAVKSSEHINEGE-----TAMLVCKSESVPPVTDWAWYKITDSEDKA---LM 130
Query: 244 DPLSDKRFTLSGGN---LIINDPRQVEDRGSYHCKASNKFGSIISESVQL 290
+ + F S L I + D G Y C ++ GS + L
Sbjct: 131 NGSESRFFVSSSQGRSELHIENLNMEADPGQYRCNGTSSKGS-DQAIITL 179
Score = 56.2 bits (135), Expect = 4e-09
Identities = 32/189 (16%), Positives = 58/189 (30%), Gaps = 43/189 (22%)
Query: 696 NLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEITNASFADAGEY 755
+ L CS + + W GV + + G E S GEY
Sbjct: 15 KILLTCSLNDSATEVTGHRWLKGGVVL----------KEDALPGQKTEFKVDSDDQWGEY 64
Query: 756 ECVVKSTVGKISTKTTVIVEGPPGLPGGVQVVEVHKTSATIQWTDGAT-----NGRPITH 810
CV + + + + GPP V+ K+S I + A P
Sbjct: 65 SCVF---LPEPMGTANIQLHGPP-------RVKAVKSSEHINEGETAMLVCKSESVPPV- 113
Query: 811 YKIIARTNWNSTWFNVSEHVIGKEVDRYTGRKEAS---------IENVLVPWSTYEFKVI 861
T+W W+ +++ ++ R S IEN+ + +++
Sbjct: 114 ------TDW--AWYKITDSEDKALMNGSESRFFVSSSQGRSELHIENLNMEADPGQYRCN 165
Query: 862 AGNELGYGE 870
+ G +
Sbjct: 166 GTSSKGSDQ 174
Score = 46.6 bits (110), Expect = 7e-06
Identities = 29/179 (16%), Positives = 44/179 (24%), Gaps = 38/179 (21%)
Query: 211 DITLSCYAGGYPNP--SYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVED 268
I L+C + W K L + L G +
Sbjct: 15 KILLTCSLNDSATEVTGHRWLKGG-----------VVLKEDA--LPGQKTEFKVDSD-DQ 60
Query: 269 RGSYHCKASNKFGSIISESVQLAFGFIGEFNLKRAPEIGNQNWGKAMF-C----DPPTNY 323
G Y C + + + + + E G AM C PP
Sbjct: 61 WGEYSCVFLPEPMGTANIQLHGPPRVKAVKSSEHINE-GE----TAMLVCKSESVPPV-- 113
Query: 324 PGVNYYWARD----YFPNFVEEDKRVFVSYDGALY----FSALEQIDAGNYSCNVQSKV 374
++ W + + R FVS + + D G Y CN S
Sbjct: 114 --TDWAWYKITDSEDKALMNGSESRFFVSSSQGRSELHIENLNMEADPGQYRCNGTSSK 170
>3shs_A HOC head outer capsid protein; immunoglobulin-like domain, phage
capsid decorative protein, interaction with bacteria;
1.95A {Enterobacteria phage RB49}
Length = 304
Score = 116 bits (290), Expect = 2e-28
Identities = 41/293 (13%), Positives = 95/293 (32%), Gaps = 58/293 (19%)
Query: 413 AGDKVRLECVAFG-YPVP---SYNWTRRGSPLPRNAYFENFNRILTIPNVKVEDQGEYIC 468
AGD L G P+P +Y WT+ P N LT+ + E+ G Y
Sbjct: 16 AGDGFTLTATVAGDEPLPSNLTYTWTKDDQPHE------NNTATLTVADATSENAGSYKV 69
Query: 469 RASNDRSALESS---VTISIQAEPNFTIPLTDKHMDNQADLTWTCEAFG--------VPD 517
+ + + ++ +Q D+ +
Sbjct: 70 TVQDTDTMTSVESEVFLMEEAELIVNITEPQHFYVSSQTDVELHATVKFSGGKTPADNYE 129
Query: 518 VTYSWFRNGELLNSETLPLEDQDRYFIQDNVLTIRYLNPERDPAMYQCRAKNQLKTRYSS 577
+ YSW + +++++ +TI+ + +Y + + + +S
Sbjct: 130 LHYSWSKGEDVIDTTQ--------------DITIQEFTAD-KNGVYTVKVWGESEDSAAS 174
Query: 578 AQLRVLTLKPSFKKRPLESETYAGEGGNVTIFC----------NPEAAPKPKFVW--KKD 625
A +++ + + +ES+T G +++ + K+ W +++
Sbjct: 175 ASTKIMLATMNVDQDVVESKT-VALGNEISLNYVVSEDIVGDSSGMPNLTIKYNWYLQRE 233
Query: 626 GNII---------GSGGRRKIFENGNLLISPVSRDDSGIYSCTATNVHGMDES 669
G + + I +G+L + DD+ + C A +++
Sbjct: 234 GQLSPTLIGSEVGEALEGFSITPDGHLFKESATYDDTAKFWCVAKLYQQIEDE 286
Score = 111 bits (279), Expect = 5e-27
Identities = 47/327 (14%), Positives = 99/327 (30%), Gaps = 52/327 (15%)
Query: 489 PNFTIPLTDKHMDNQADLTWTCEAFG----VPDVTYSWFRNGELLNSETLPLEDQDRYFI 544
+I + T T G ++TY+W ++ + + T
Sbjct: 3 FTVSIQSNKRCFLAGDGFTLTATVAGDEPLPSNLTYTWTKDDQPHENNT----------- 51
Query: 545 QDNVLTIRYLNPERDPAMYQCRAKNQLKTRYSSAQLRVLTLKPSFKKRPLESETYAGEGG 604
LT+ E + Y+ ++ +++ ++ Y
Sbjct: 52 --ATLTVADATSE-NAGSYKVTVQDTDTMTSVESEVFLMEEAELIVNITEPQHFYVSSQT 108
Query: 605 NVTIFCN--------PEAAPKPKFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIY 656
+V + P + + W K ++I + ++ I + D +G+Y
Sbjct: 109 DVELHATVKFSGGKTPADNYELHYSWSKGEDVIDT--------TQDITIQEFTADKNGVY 160
Query: 657 SCTATNVHGMDESKGRLIVLHGPSYYEQLPPK-ITIAAHRNLQLRCSAHTEELLD----- 710
+ + ++ +Q + T+A + L + + D
Sbjct: 161 TVKVWGESEDSAASASTKIMLATMNVDQDVVESKTVALGNEISLNYVVSEDIVGDSSGMP 220
Query: 711 ---VAYIWTHNG------VRIGNMDLNELETPNINIDGGLLEITNASFADAGEYECVVKS 761
+ Y W IG+ LE +I DG L +A++ D ++ CV K
Sbjct: 221 NLTIKYNWYLQREGQLSPTLIGSEVGEALEGFSITPDGHLF-KESATYDDTAKFWCVAKL 279
Query: 762 TVGKISTKTTVIVEGPPGLPGGVQVVE 788
TV V ++VV+
Sbjct: 280 YQQ--IEDETVEVAASTSRKCSMEVVK 304
Score = 98.4 bits (244), Expect = 1e-22
Identities = 26/243 (10%), Positives = 66/243 (27%), Gaps = 43/243 (17%)
Query: 585 LKPSFKKRPLESETYAGEGGNVTIFCNPEA-APKPK---FVWKKDGNIIGSGGRRKIFEN 640
+ + + + AG+G T+ P P + W KD +
Sbjct: 1 MAFTVSIQSNKRCFLAGDG--FTLTATVAGDEPLPSNLTYTWTKDDQPHENN-------T 51
Query: 641 GNLLISPVSRDDSGIYSCTATNVHGMDESKGRLIVLHG--PSYYEQLPPKITIAAHRNLQ 698
L ++ + +++G Y T + M + + ++ P +++ +++
Sbjct: 52 ATLTVADATSENAGSYKVTVQDTDTMTSVESEVFLMEEAELIVNITEPQHFYVSSQTDVE 111
Query: 699 LRCSAHT------EELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEITNASFADA 752
L + + ++ Y W+ I + I +
Sbjct: 112 LHATVKFSGGKTPADNYELHYSWSKGEDVIDT--------------TQDITIQEFTADKN 157
Query: 753 GEYECVVKSTVGKISTKTTVIVEGPP---GLPGGVQVVEVHKTSATIQWT-----DGATN 804
G Y V + + + ++ + G ++
Sbjct: 158 GVYTVKVWGESEDSAASASTKIMLATMNVDQDVVESKTVALGNEISLNYVVSEDIVGDSS 217
Query: 805 GRP 807
G P
Sbjct: 218 GMP 220
Score = 86.4 bits (213), Expect = 2e-18
Identities = 46/299 (15%), Positives = 88/299 (29%), Gaps = 53/299 (17%)
Query: 317 CDPPTNYPG---VNYYWARDYFPNFVEEDKRVFVSYDGALYFSALEQIDAGNYSCNVQSK 373
+ P + Y W +D P + L + +AG+Y VQ
Sbjct: 24 ATVAGDEPLPSNLTYTWTKDDQP---------HENNTATLTVADATSENAGSYKVTVQDT 74
Query: 374 VSDTGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPEAPKAGDKVRLECV---AFGYPVP- 429
+ T F ++ N + + V L + G
Sbjct: 75 DTMTSVESEVFLMEEAE--------LIVNITEPQHFYVSSQTDVELHATVKFSGGKTPAD 126
Query: 430 ----SYNWTRRGSPLPRNAYFENFNRILTIPNVKVEDQGEYICRASNDRSALESSVTISI 485
Y+W++ + +TI + G Y + + +S + I
Sbjct: 127 NYELHYSWSKGEDVIDTTQ-------DITIQEFTADKNGVYTVKVWGESEDSAASASTKI 179
Query: 486 QAEPNFTIPLTDKHM----DNQADLTWT------CEAFGVPDVT--YSWFRNGELLNSET 533
+ N+ L + ++ G+P++T Y+W+ E S T
Sbjct: 180 MLATMNVDQDVVESKTVALGNEISLNYVVSEDIVGDSSGMPNLTIKYNWYLQREGQLSPT 239
Query: 534 LPL----EDQDRYFI-QDNVLTIRYLNPERDPAMYQCRAKNQLKTRYSSAQLRVLTLKP 587
L E + + I D L + D A + C AK + + ++ T +
Sbjct: 240 LIGSEVGEALEGFSITPDGHLFKESATYD-DTAKFWCVAKLYQQIEDETVEVAASTSRK 297
Score = 76.0 bits (186), Expect = 5e-15
Identities = 45/339 (13%), Positives = 88/339 (25%), Gaps = 76/339 (22%)
Query: 190 PYFIKQPTDVVFDLSKRSILNDITLSCYA-GGYPNP---SYEWFKEDYVQDRLVANLIDP 245
Q F + TL+ G P P +Y W K+D P
Sbjct: 3 FTVSIQSNKRCFLAG-----DGFTLTATVAGDEPLPSNLTYTWTKDD-----------QP 46
Query: 246 LSDKRFTLSGGNLIINDPRQVEDRGSYHCKASNKFGSIISESVQLA--FGFIGEFNLKRA 303
+ + L + D E+ GSY + ES + +
Sbjct: 47 HEN-----NTATLTVADA-TSENAGSYKVTVQDTDTMTSVESEVFLMEEAELIVNITEPQ 100
Query: 304 PEIGNQNWGKAMFC-------DPPTNYPGVNYYWARDYFPNFVEEDKRVFVSYDGALYFS 356
+ + P + ++Y W++ + +
Sbjct: 101 HFYVSSQTDVELHATVKFSGGKTPADNYELHYSWSKG----------EDVIDTTQDITIQ 150
Query: 357 ALEQIDAGNYSCNVQSKVSDTGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPEAPKAGDK 416
G Y+ V + D+ + K+ + + G++
Sbjct: 151 EFTADKNGVYTVKVWGESEDSAASAS---TKI------MLATMNVDQDVVESKTVALGNE 201
Query: 417 VRLECVAF--------GYPVPS--YNW--TRRGSPLPRNAYFENFNRI----------LT 454
+ L V G P + YNW R G P E + L
Sbjct: 202 ISLNYVVSEDIVGDSSGMPNLTIKYNWYLQREGQLSPTLIGSEVGEALEGFSITPDGHLF 261
Query: 455 IPNVKVEDQGEYICRASNDRSALESSVTISIQAEPNFTI 493
+ +D ++ C A + + +V ++ ++
Sbjct: 262 KESATYDDTAKFWCVAKLYQQIEDETVEVAASTSRKCSM 300
>2r15_A Myomesin-1; sarcomeric protein, IG-like domains, homodimer,
immunoglobul domain, muscle protein, thick filament,
contractIle protein; 2.24A {Homo sapiens}
Length = 212
Score = 112 bits (281), Expect = 3e-28
Identities = 35/216 (16%), Positives = 57/216 (26%), Gaps = 35/216 (16%)
Query: 487 AEPNFTIPLTDKHMDNQADLTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQD 546
+ L + L + + V D+ +W NG + DR
Sbjct: 3 SIALSATDLKIQSTAEGIQLY-SFVTYYVEDLKVNWSHNGS-------AIRYSDRVKTGV 54
Query: 547 N----VLTIRYLNPERDPAMYQCRAKNQLKTRYSSAQLRVLTLKPSFKK----------- 591
L I P D Y + + L ++ +
Sbjct: 55 TGEQIWLQINEPTPN-DKGKYVMELFDGKTGHQKTVDLSGQAYDEAYAEFQRLKQAAIAE 113
Query: 592 -------RPLESETYAGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGN-- 642
L EG + + CN P P+ W K+ + +
Sbjct: 114 KNRARVLGGLPDVVTIQEGKALNLTCNVWGDPPPEVSWLKNEKALAQTDHCNLKFEAGRT 173
Query: 643 --LLISPVSRDDSGIYSCTATNVHGMDESKGRLIVL 676
I+ VS DSG Y N +G + S + V
Sbjct: 174 AYFTINGVSTADSGKYGLVVKNKYGSETSDFTVSVF 209
Score = 110 bits (276), Expect = 1e-27
Identities = 42/210 (20%), Positives = 68/210 (32%), Gaps = 31/210 (14%)
Query: 592 RPLESETYAGEGGNVTIFCNPEAA-PKPKFVWKKDGNIIGSGGRRKIFENGN---LLISP 647
L+ ++ EG + ++ K W +G+ I R K G L I+
Sbjct: 9 TDLKIQS-TAEG--IQLYSFVTYYVEDLKVNWSHNGSAIRYSDRVKTGVTGEQIWLQINE 65
Query: 648 VSRDDSGIYSCTATNVHGMDESKGRLIVL--------------------HGPSYYEQLPP 687
+ +D G Y + + L + LP
Sbjct: 66 PTPNDKGKYVMELFDGKTGHQKTVDLSGQAYDEAYAEFQRLKQAAIAEKNRARVLGGLPD 125
Query: 688 KITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEITNA 747
+TI + L L C+ + +V W N + D L+ I
Sbjct: 126 VVTIQEGKALNLTCNVWGDPPPEV--SWLKNEKALAQTDHCNLK--FEAGRTAYFTINGV 181
Query: 748 SFADAGEYECVVKSTVGKISTKTTVIVEGP 777
S AD+G+Y VVK+ G ++ TV V P
Sbjct: 182 STADSGKYGLVVKNKYGSETSDFTVSVFIP 211
Score = 98.8 bits (246), Expect = 2e-23
Identities = 34/202 (16%), Positives = 61/202 (30%), Gaps = 39/202 (19%)
Query: 413 AGDKVRLEC-VAFGYPVPSYNWTRRGSPLPRNA----YFENFNRILTIPNVKVEDQGEYI 467
+ ++L V + NW+ GS + + L I D+G+Y+
Sbjct: 16 TAEGIQLYSFVTYYVEDLKVNWSHNGSAIRYSDRVKTGVTGEQIWLQINEPTPNDKGKYV 75
Query: 468 CRASNDRSALESSVTISIQAEPNFTI----------------PLTDKHMDNQA-----DL 506
+ ++ + +V +S QA + D L
Sbjct: 76 MELFDGKTGHQKTVDLSGQAYDEAYAEFQRLKQAAIAEKNRARVLGGLPDVVTIQEGKAL 135
Query: 507 TWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFI-----QDNVLTIRYLNPERDPA 561
TC +G P SW +N + L D + + TI ++ D
Sbjct: 136 NLTCNVWGDPPPEVSWLKNEK-------ALAQTDHCNLKFEAGRTAYFTINGVSTA-DSG 187
Query: 562 MYQCRAKNQLKTRYSSAQLRVL 583
Y KN+ + S + V
Sbjct: 188 KYGLVVKNKYGSETSDFTVSVF 209
Score = 87.2 bits (216), Expect = 2e-19
Identities = 32/194 (16%), Positives = 56/194 (28%), Gaps = 20/194 (10%)
Query: 312 GKAMFCDPPTNYPGVNYYWARDYFPNFVEEDKRVFVSYDG---ALYFSALEQIDAGNYSC 368
G ++ + W+ + + RV G L + D G Y
Sbjct: 19 GIQLYSFVTYYVEDLKVNWSHNGSA--IRYSDRVKTGVTGEQIWLQINEPTPNDKGKYVM 76
Query: 369 ---NVQSKVSDTGR-NGPFFPLKVFPHSNFQQLKFPN-NFPKTFPEAPK-----AGDKVR 418
+ ++ T +G + +Q N + P G +
Sbjct: 77 ELFDGKTGHQKTVDLSGQAYDEAYAEFQRLKQAAIAEKNRARVLGGLPDVVTIQEGKALN 136
Query: 419 LECVAFGYPVPSYNWTRRGSPLPRNAYF-----ENFNRILTIPNVKVEDQGEYICRASND 473
L C +G P P +W + L + + TI V D G+Y N
Sbjct: 137 LTCNVWGDPPPEVSWLKNEKALAQTDHCNLKFEAGRTAYFTINGVSTADSGKYGLVVKNK 196
Query: 474 RSALESSVTISIQA 487
+ S T+S+
Sbjct: 197 YGSETSDFTVSVFI 210
Score = 56.4 bits (136), Expect = 6e-09
Identities = 22/103 (21%), Positives = 28/103 (27%), Gaps = 17/103 (16%)
Query: 187 PRGPYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPL 246
R P V K + L+C G P P W K + +
Sbjct: 115 NRARVLGGLPDVVTIQEGK-----ALNLTCNVWGDPPPEVSWLKNEKA--------LAQT 161
Query: 247 SDKRFTLSGGN---LIINDPRQVEDRGSYHCKASNKFGSIISE 286
G IN D G Y NK+GS S+
Sbjct: 162 DHCNLKFEAGRTAYFTINGVST-ADSGKYGLVVKNKYGSETSD 203
Score = 54.5 bits (131), Expect = 3e-08
Identities = 26/191 (13%), Positives = 52/191 (27%), Gaps = 39/191 (20%)
Query: 211 DITLSCY-AGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGN--LIINDPRQVE 267
I L + + W + I + ++G L IN+P
Sbjct: 19 GIQLYSFVTYYVEDLKVNWSHNG--------SAIRYSDRVKTGVTGEQIWLQINEP-TPN 69
Query: 268 DRGSYHCKASNKFGSIISE---SVQLAFGFIGEFNLKRAPEIGNQNWGKAMFCDPPTN-- 322
D+G Y + + S Q EF + I +N + + P
Sbjct: 70 DKGKYVMELFDGKTGHQKTVDLSGQAYDEAYAEFQRLKQAAIAEKNRAR-VLGGLPDVVT 128
Query: 323 ---------------YPGVNYYWARDYFPNFVEEDKRVFVSYD----GALYFSALEQIDA 363
P W ++ + + + ++ + + D+
Sbjct: 129 IQEGKALNLTCNVWGDPPPEVSWLKNEKA--LAQTDHCNLKFEAGRTAYFTINGVSTADS 186
Query: 364 GNYSCNVQSKV 374
G Y V++K
Sbjct: 187 GKYGLVVKNKY 197
Score = 49.1 bits (117), Expect = 2e-06
Identities = 17/110 (15%), Positives = 36/110 (32%), Gaps = 15/110 (13%)
Query: 689 ITIAAHRNLQLRCSAHTEELL--------DVAYIWTHNGVRIGNMDLNELETPNINIDGG 740
+ +L+++ +A +L D+ W+HNG I D + + G
Sbjct: 3 SIALSATDLKIQSTAEGIQLYSFVTYYVEDLKVNWSHNGSAIRYSDRVK-----TGVTGE 57
Query: 741 L--LEITNASFADAGEYECVVKSTVGKISTKTTVIVEGPPGLPGGVQVVE 788
L+I + D G+Y + + + Q ++
Sbjct: 58 QIWLQINEPTPNDKGKYVMELFDGKTGHQKTVDLSGQAYDEAYAEFQRLK 107
>1vca_A VCAM-D1,2, human vascular cell adhesion molecule-1; immunoglobulin
superfamily, integrin-binding, cell adhesion protein;
1.80A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 PDB: 1ij9_A
1vsc_A
Length = 202
Score = 111 bits (277), Expect = 6e-28
Identities = 41/188 (21%), Positives = 69/188 (36%), Gaps = 13/188 (6%)
Query: 408 PEAPKAGDKVRLECVAFGYPVPSYNWTR-RGSPLPRNAYFENFNRILTIPNVKVEDQGEY 466
+ GD V L C G P ++W SPL E LT+ V ++ Y
Sbjct: 10 RYLAQIGDSVSLTCSTTGCESPFFSWRTQIDSPLNGKVTNEGTTSTLTMNPVSFGNEHSY 69
Query: 467 ICRASNDRSALESSVTISIQAEPNFTIPLTDKHMDNQADLTWTCEAFGV---PDVTYSWF 523
+C A+ + LE + + I + P ++ +T C V +
Sbjct: 70 LCTATCESRKLEKGIQVEIYSFPKDPEIHLSGPLEAGKPITVKCSVADVYPFDRLEIDLL 129
Query: 524 RNGELLNSETLPLEDQDRYFIQDNVLTIRYLN-PERDPAMYQCRAKNQL-------KTRY 575
+ L+ S+ LED DR ++ L + + E + CRAK + R
Sbjct: 130 KGDHLMKSQEF-LEDADRKSLETKSLEVTFTPVIEDIGKVLVCRAKLHIDEMDSVPTVRQ 188
Query: 576 SSAQLRVL 583
+ +L+V
Sbjct: 189 AVKELQVY 196
Score = 93.7 bits (232), Expect = 6e-22
Identities = 31/193 (16%), Positives = 59/193 (30%), Gaps = 10/193 (5%)
Query: 595 ESETYAGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSG 654
ES A G +V++ C+ P F W+ + +G L ++PVS +
Sbjct: 8 ESRYLAQIGDSVSLTCSTTGCESPFFSWRTQIDSPLNGKVTNEGTTSTLTMNPVSFGNEH 67
Query: 655 IYSCTATNVHGMDESKGRLIVLHGPSYYEQLPPKITIAAHRNLQLRCSAH-TEELLDVAY 713
Y CTAT E ++ + + ++ + A + + ++CS +
Sbjct: 68 SYLCTATCESRKLEKGIQVEI-YSFPKDPEIHLSGPLEAGKPITVKCSVADVYPFDRLEI 126
Query: 714 IWTHNGVRIGNMDLNELETPNINIDGGLLEITNASFADAG-EYECVVKSTVGK------- 765
+ + + E L D G C K + +
Sbjct: 127 DLLKGDHLMKSQEFLEDADRKSLETKSLEVTFTPVIEDIGKVLVCRAKLHIDEMDSVPTV 186
Query: 766 ISTKTTVIVEGPP 778
+ V P
Sbjct: 187 RQAVKELQVYISP 199
Score = 52.9 bits (126), Expect = 8e-08
Identities = 25/179 (13%), Positives = 57/179 (31%), Gaps = 26/179 (14%)
Query: 211 DITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVEDRG 270
++L+C G +P + W + PL+ K + + +P +
Sbjct: 18 SVSLTCSTTGCESPFFSWRT----------QIDSPLNGKVTNEGTTSTLTMNPVSFGNEH 67
Query: 271 SYHCKASNKFGSIISESVQL---AFGFIGEFNLKRAPEIGNQNWGKAMF-CDPPTNYP-- 324
SY C A+ + + + +Q+ +F E +L E G C YP
Sbjct: 68 SYLCTATCESRK-LEKGIQVEIYSFPKDPEIHLSGPLEAGKP----ITVKCSVADVYPFD 122
Query: 325 GVNYYWARD-----YFPNFVEEDKRVFVSYDGALYFSALEQIDAGNYSCNVQSKVSDTG 378
+ + + D++ + + F+ + + C + + +
Sbjct: 123 RLEIDLLKGDHLMKSQEFLEDADRKSLETKSLEVTFTPVIEDIGKVLVCRAKLHIDEMD 181
Score = 42.8 bits (100), Expect = 2e-04
Identities = 21/162 (12%), Positives = 36/162 (22%), Gaps = 27/162 (16%)
Query: 686 PPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEIT 745
+ ++ L CS E W +D L +
Sbjct: 8 ESRYLAQIGDSVSLTCSTTGCESPFF--SWRTQ------IDSPLNGKVTNEGTTSTLTMN 59
Query: 746 NASFADAGEYECVVKSTVGKISTKTTVIVEGPPGLP-----GGVQV---VEVH------- 790
SF + Y C K+ V + P P G ++ + V
Sbjct: 60 PVSFGNEHSYLCTATCESRKLEKGIQVEIYSFPKDPEIHLSGPLEAGKPITVKCSVADVY 119
Query: 791 -KTSATIQWTDGATNGRPITHYKIIARTNWNSTWFNVSEHVI 831
I G + + + + S E
Sbjct: 120 PFDRLEIDLLKG---DHLMKSQEFLEDADRKSLETKSLEVTF 158
Score = 38.2 bits (88), Expect = 0.005
Identities = 17/84 (20%), Positives = 27/84 (32%), Gaps = 8/84 (9%)
Query: 210 NDITLSCYA-GGYPNP--SYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQV 266
IT+ C YP + K D L+ + R +L +L + +
Sbjct: 107 KPITVKCSVADVYPFDRLEIDLLKGD----HLMKSQEFLEDADRKSLETKSLEVTFTPVI 162
Query: 267 EDRG-SYHCKASNKFGSIISESVQ 289
ED G C+A + S
Sbjct: 163 EDIGKVLVCRAKLHIDEMDSVPTV 186
>1wis_A KIAA1514 protein; FNIII domain, sidekick-2, structural genomics,
riken structural genomics/proteomics initiative, RSGI,
unknown function; NMR {Homo sapiens} SCOP: b.1.2.1
Length = 124
Score = 106 bits (266), Expect = 3e-27
Identities = 23/119 (19%), Positives = 48/119 (40%), Gaps = 4/119 (3%)
Query: 767 STKTTVIVEGPPGLPGGVQVVEVHKTSATIQWTDGATNGRPITHYKIIARTNWNSTWFNV 826
T ++ + PG P + + + S T+Q+ G I+ + + A+
Sbjct: 7 GTISSGVPPELPGPPTNLGISNIGPRSVTLQFRPGYDGKTSISRWLVEAQVGVVGEG--- 63
Query: 827 SEHVIGKEVDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPSPQYNTPADKP 885
E ++ ++ + + + L P++ Y F++ N +G PS PS + T P
Sbjct: 64 EEWLLIHQLSNEPDARSMEVPD-LNPFTCYSFRMRQVNIVGTSPPSQPSRKIQTLQSGP 121
Score = 35.8 bits (83), Expect = 0.015
Identities = 17/123 (13%), Positives = 36/123 (29%), Gaps = 24/123 (19%)
Query: 867 GYGEPSSPSPQYNTPADKPYQAPSRIGGGGGKIGDLS-----ISWEPLPREKQNAP---- 917
G S P + P P+ + I ++ + + P
Sbjct: 1 GSSGSSGTI-SSGVPPELP-GPPTNL-----GISNIGPRSVTLQFRP--GYDGKTSISRW 51
Query: 918 NIYYKIFWRKKNDTEFQSETLKEYGNVGIAVVR--IPSEFYYTEYEVKVQAINDVGPGPE 975
+ ++ + + L + V P +T Y +++ +N VG P
Sbjct: 52 LVEAQVGVVGEGEEWLLIHQLSNEPDARSMEVPDLNP----FTCYSFRMRQVNIVGTSPP 107
Query: 976 SEV 978
S+
Sbjct: 108 SQP 110
>1n26_A IL-6 receptor alpha chain; transmembrane, glycoprotein,
immunoglobulin domain, cytokine; HET: NAG BMA MAN NDG;
2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.2.1 b.1.2.1 PDB:
1p9m_C 2arw_A
Length = 325
Score = 112 bits (280), Expect = 4e-27
Identities = 41/302 (13%), Positives = 92/302 (30%), Gaps = 22/302 (7%)
Query: 678 GPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINI 737
E +T ++ L C E + W G+
Sbjct: 5 RCPAQEVARGVLTSLPGDSVTLTCPGVEPED-NATVHWVLRKPAAGS------HPSRWAG 57
Query: 738 DGGLLEITNASFADAGEYECVVKSTVGKISTKTTVIVEGPPGLPGGVQVVEVHKTSATIQ 797
G L + + D+G Y C G+ + ++V+ PP P + ++ +
Sbjct: 58 MGRRLLLRSVQLHDSGNYSCYRA---GRPAGTVHLLVDVPPEEPQLSCFRKSPLSNVVCE 114
Query: 798 WTDGATNGRPITHYKIIARTNWNSTWFNVSEHVIGKEVDRYTGRKEASIENVLVPWSTYE 857
W + T ++ R NS + + + + + + S Y
Sbjct: 115 WGP-RSTPSLTTKAVLLVRKFQNSPA---EDFQEPCQYSQESQKFSCQLAVPEGDSSFYI 170
Query: 858 FKVIAGNELGYGE--PSSPSPQYNTPADKPYQAPSRIGGGGGKIGDLSISWEPLPREKQN 915
+ + +G + D P + LS++W+ +
Sbjct: 171 VSMCVASSVGSKFSKTQTFQGCGILQPDPPAN--ITVTAVARNPRWLSVTWQDPHSWNSS 228
Query: 916 APNIYYKIFWRKKNDTEFQSETLKEYGNVGIAVVRIPSEFYYTEYEVKVQAINDVGPGPE 975
+ +++ +R + F + +K+ + I + + V+++A + G G
Sbjct: 229 FYRLRFELRYRAERSKTFTTWMVKDLQH----HCVIHDAWSGLRHVVQLRAQEEFGQGEW 284
Query: 976 SE 977
SE
Sbjct: 285 SE 286
Score = 94.5 bits (234), Expect = 5e-21
Identities = 53/317 (16%), Positives = 87/317 (27%), Gaps = 30/317 (9%)
Query: 586 KPSFKKRPLESETYAGEGGNVTIFCN-PEAAPKPKFVWKKDGNIIGSGGRRKIFENGNLL 644
P+ + + G +VT+ C E W GS R LL
Sbjct: 6 CPAQEVAR--GVLTSLPGDSVTLTCPGVEPEDNATVHWVLRKPAAGSHPSRWAGMGRRLL 63
Query: 645 ISPVSRDDSGIYSCTATNVHGMDESKGRLIVLHGPSYYEQLPPKITIAAHRNLQLRCSAH 704
+ V DSG YSC G L+V P + + N+
Sbjct: 64 LRSVQLHDSGNYSCYRA---GRPAGTVHLLVDVPPEEPQLS--CFRKSPLSNVVCEWGPR 118
Query: 705 TEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEITNASFADAGEYE--CVVKST 762
+ L + + + + D+ Y V S+
Sbjct: 119 STPSLTTKAVLLVRKFQNSPAEDFQEPCQYSQESQKFSCQLAVPEGDSSFYIVSMCVASS 178
Query: 763 VGKISTKTTVIV------EGPPGLPGGVQVVEVHKTSATIQWTD--GATNGRPITHYKII 814
VG +KT PP V V + ++ W D + +++
Sbjct: 179 VGSKFSKTQTFQGCGILQPDPPANI-TVTAVARNPRWLSVTWQDPHSWNSSFYRLRFELR 237
Query: 815 ARTNWNSTWFNVSEHVIGKEVDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSP 874
R + T+ + I + + ++ A E G GE S
Sbjct: 238 YRAERSKTF---------TTWMVKDLQHHCVIHD-AWSGLRHVVQLRAQEEFGQGEWSEW 287
Query: 875 SP-QYNTPADKPYQAPS 890
SP TP + P+
Sbjct: 288 SPEAMGTPWTESRSPPA 304
Score = 56.0 bits (134), Expect = 2e-08
Identities = 27/172 (15%), Positives = 51/172 (29%), Gaps = 11/172 (6%)
Query: 412 KAGDKVRLECVAF-GYPVPSYNWTRRGSPLPRNAY-FENFNRILTIPNVKVEDQGEYICR 469
GD V L C + +W R + + R L + +V++ D G Y C
Sbjct: 19 LPGDSVTLTCPGVEPEDNATVHWVLRKPAAGSHPSRWAGMGRRLLLRSVQLHDSGNYSCY 78
Query: 470 ASNDRSALESSVTISIQAEPNF-TIPLTDKHMDNQADLTWTCEAFGVPDVTYS-WFRNGE 527
+ +V + + P + K + W + R +
Sbjct: 79 RAGR---PAGTVHLLVDVPPEEPQLSCFRKSPLSNVVCEWGPRSTPSLTTKAVLLVRKFQ 135
Query: 528 LLNSETLPLEDQDRYFIQDNVLTIRYLNPERDPAMY--QCRAKNQLKTRYSS 577
+E Q Q + PE D + Y + + +++S
Sbjct: 136 NSPAEDFQEPCQYSQESQKFSCQLAV--PEGDSSFYIVSMCVASSVGSKFSK 185
Score = 32.1 bits (72), Expect = 0.88
Identities = 10/61 (16%), Positives = 18/61 (29%), Gaps = 2/61 (3%)
Query: 317 CDPPTNYPGVNYYWARDYFPNFVEEDKRVFVSYDGALYFSALEQIDAGNYSCNVQSKVSD 376
C +W + L +++ D+GNYSC + +
Sbjct: 28 CPGVEPEDNATVHWVLRKPA--AGSHPSRWAGMGRRLLLRSVQLHDSGNYSCYRAGRPAG 85
Query: 377 T 377
T
Sbjct: 86 T 86
>3p4l_A Neogenin; iron homeostasis, hemojuvelin receptor, FNIII domain,
fibron type III, cell adhesion; 1.80A {Homo sapiens}
PDB: 1x5k_A
Length = 211
Score = 107 bits (269), Expect = 1e-26
Identities = 40/206 (19%), Positives = 62/206 (30%), Gaps = 16/206 (7%)
Query: 777 PPGLPGGVQVVEVHKTSATIQWTDGATNGR----PITHYKIIARTNWNSTWFNVSEHVIG 832
P P GVQ + + I W D + +Y + +TN +
Sbjct: 4 PMMPPVGVQASILSHDTIRITWADNSLPKHQKITDSRYYTVRWKTNIPANTK---YKNAN 60
Query: 833 KEVDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPSPQYNTPADKPYQAPSRI 892
Y + L P + YEF V+ S + T P P +
Sbjct: 61 ATTLSYL------VTG-LKPNTLYEFSVMVTKGRRSSTWSMTAHGT-TFELVPTSPPKDV 112
Query: 893 GGGGGKIGDLSISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETLKEYGNVGIAVVRIP 952
+ +I P + N Y I++ + E ++ +I
Sbjct: 113 TVVSKEGKPKTIIVNWQPPSEANGKITGYIIYYSTDVNAEIHDWVIEPVVG-NRLTHQIQ 171
Query: 953 SEFYYTEYEVKVQAINDVGPGPESEV 978
T Y K+QA N G GP SE
Sbjct: 172 ELTLDTPYYFKIQARNSKGMGPMSEA 197
Score = 65.2 bits (159), Expect = 5e-12
Identities = 17/99 (17%), Positives = 29/99 (29%), Gaps = 6/99 (6%)
Query: 882 ADKPYQAPSRIGGGGGKIGDLSISWEP--LPREKQNAPNIYYKIFWRKKNDTEFQSETLK 939
AD P P + + I+W LP+ ++ + YY + W+ + +
Sbjct: 1 ADLPMMPPVGVQASILSHDTIRITWADNSLPKHQKITDSRYYTVRWKTNIPANTKYKNA- 59
Query: 940 EYGNVGIAVVRIPSEFYYTEYEVKVQAINDVGPGPESEV 978
N + T YE V S
Sbjct: 60 ---NATTLSYLVTGLKPNTLYEFSVMVTKGRRSSTWSMT 95
Score = 54.8 bits (132), Expect = 2e-08
Identities = 27/129 (20%), Positives = 38/129 (29%), Gaps = 15/129 (11%)
Query: 754 EYECVVKST----VGKISTKTTVIV-EGPPGLPG---GVQVVEVHKTSATIQWTDGATNG 805
YE V T S E P P V E + + W +
Sbjct: 76 LYEFSVMVTKGRRSSTWSMTAHGTTFELVPTSPPKDVTVVSKEGKPKTIIVNWQPPSEAN 135
Query: 806 RPITHYKIIARTNWNSTWFNVSEHVIGKEVDRYTGRKEASIENVLVPWSTYEFKVIAGNE 865
IT Y I T+ N+ + + + I+ L + Y FK+ A N
Sbjct: 136 GKITGYIIYYSTDVNAEIHDWVIEPVVGNRLTHQ------IQE-LTLDTPYYFKIQARNS 188
Query: 866 LGYGEPSSP 874
G G S
Sbjct: 189 KGMGPMSEA 197
>2vkw_A Neural cell adhesion molecule 1,140 kDa isoform; adhesion receptor;
2.3A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 PDB: 2vkx_A
1lwr_A
Length = 209
Score = 107 bits (269), Expect = 1e-26
Identities = 44/214 (20%), Positives = 73/214 (34%), Gaps = 29/214 (13%)
Query: 773 IVEGPPGLPGGVQVVEVHKTSATIQWTD-GATNGRPITHYKIIARTNWNSTWFNVSEHVI 831
P P + VE + ++A +Q+ + AT G PI YK R W +
Sbjct: 4 AQADTPSSPS-IDQVEPYSSTAQVQFDEPEATGGVPILKYKAEWRAVGEEVWHSKWY--- 59
Query: 832 GKEVDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPSPQYNTPADKPYQAPSR 891
+ + +I L P +TY ++ A N G GE S+ S ++ T + AP
Sbjct: 60 --DAKEASMEGIVTIVG-LKPETTYAVRLAALNGKGLGEISAAS-EFKTQPVREPSAPKL 115
Query: 892 IGGGGGKIGDLSISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETLKEYGNVGIAVVRI 951
G G + ++ +P +Y + +R + +
Sbjct: 116 EGQMGEDGNSIKVNLIKQDD--GGSPIRHYLVRYRALSSEWKPEIR-----------LPS 162
Query: 952 PSEFY-------YTEYEVKVQAINDVGPGPESEV 978
S+ EYEV V A N G +
Sbjct: 163 GSDHVMLKSLDWNAEYEVYVVAENQQGKSKAAHF 196
Score = 69.5 bits (170), Expect = 2e-13
Identities = 24/122 (19%), Positives = 41/122 (33%), Gaps = 14/122 (11%)
Query: 763 VGKISTKTTVIVEG--PPGLPGGVQVVEVHKTSATIQWTDGATNGRPITHYKIIARTNWN 820
+G+IS + + P P + S + G PI HY + R +
Sbjct: 93 LGEISAASEFKTQPVREPSAPKLEGQMGEDGNSIKVNLIKQDDGGSPIRHYLVRYRAL-S 151
Query: 821 STWFNVSEHVIGKEVDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPSPQYNT 880
S W D +++ L + YE V+A N+ G + + + T
Sbjct: 152 SEWKPEIRLPS--GSDHVM------LKS-LDWNAEYEVYVVAENQQGKSKAAHFVFR--T 200
Query: 881 PA 882
A
Sbjct: 201 AA 202
>3r4d_A CEA-related cell adhesion molecule 1, isoform 1/2; immunoglobulin,
beta-sandwich, mceacam1A - immunoglobulin FO spike NTD -
galectin-like beta-sandwich fold; HET: NAG; 3.10A {Mus
musculus} PDB: 1l6z_A*
Length = 208
Score = 107 bits (267), Expect = 2e-26
Identities = 38/214 (17%), Positives = 64/214 (29%), Gaps = 35/214 (16%)
Query: 598 TYAGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSG-------------------GRRKIF 638
E NV + + F W K GR I+
Sbjct: 9 PQVAEDNNVLLLVHNLPLALGAFAWYKGNTTAIDKEIARFVPNSNMNFTGQAYSGREIIY 68
Query: 639 ENGNLLISPVSRDDSGIYSCTATNVHGMDESK-GRLIVLHGPSYYEQLPPKITIAAHRNL 697
NG+LL ++ D G+Y+ T+ + R V + T+ ++
Sbjct: 69 SNGSLLFQMITMKDMGVYTLDMTDENYRRTQATVRFHVHQPVTQPFLQVTNTTVKELDSV 128
Query: 698 QLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEITNASFADAGEYEC 757
L C ++ W N L E ++ + +L I DAGEY+C
Sbjct: 129 TLTCLSNDIG---ANIQWLFNSQS-----LQLTERMTLSQNNSILRIDPIKREDAGEYQC 180
Query: 758 VVKSTVG-KISTKTTVIVEGPPGLPGGVQVVEVH 790
+ + V + S + + P H
Sbjct: 181 EISNPVSVRRSNSIKLDIIFDP------HHHHHH 208
Score = 99.7 bits (248), Expect = 7e-24
Identities = 29/193 (15%), Positives = 64/193 (33%), Gaps = 20/193 (10%)
Query: 505 DLTWTCEAFGVPDVTYSWFRNGELL------------NSETLPLEDQDRYFIQDN-VLTI 551
++ + ++W++ N R I N L
Sbjct: 16 NVLLLVHNLPLALGAFAWYKGNTTAIDKEIARFVPNSNMNFTGQAYSGREIIYSNGSLLF 75
Query: 552 RYLNPERDPAMYQCRAKN-QLKTRYSSAQLRVLTLKPSFKKRPLESETYAGEGGNVTIFC 610
+ + + D +Y + + ++ + V + + T E +VT+ C
Sbjct: 76 QMITMK-DMGVYTLDMTDENYRRTQATVRFHVHQPVTQPFLQV--TNTTVKELDSVTLTC 132
Query: 611 NPEAAPKPKFVWKKDGNIIGSGGRRKIFENGNLL-ISPVSRDDSGIYSCTATNVHGMDES 669
W + + R + +N ++L I P+ R+D+G Y C +N + S
Sbjct: 133 LSND-IGANIQWLFNSQSLQLTERMTLSQNNSILRIDPIKREDAGEYQCEISNPVSVRRS 191
Query: 670 KG-RLIVLHGPSY 681
+L ++ P +
Sbjct: 192 NSIKLDIIFDPHH 204
Score = 87.0 bits (215), Expect = 2e-19
Identities = 31/201 (15%), Positives = 60/201 (29%), Gaps = 34/201 (16%)
Query: 408 PEAPKAGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYFE-------------------- 447
P + V L + ++ W + +
Sbjct: 8 PPQVAEDNNVLLLVHNLPLALGAFAWYKGNTTAIDKEIARFVPNSNMNFTGQAYSGREII 67
Query: 448 NFNRILTIPNVKVEDQGEYICRASNDRSALESSVT--ISIQAEPNFTIPLTDKHMDNQAD 505
N L + ++D G Y +++ + Q + +T+ +
Sbjct: 68 YSNGSLLFQMITMKDMGVYTLDMTDENYRRTQATVRFHVHQPVTQPFLQVTNTTVKELDS 127
Query: 506 LTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQDN--VLTIRYLNPERDPAMY 563
+T TC + W N + L+ +R + N +L I + E D Y
Sbjct: 128 VTLTCLSND-IGANIQWLFNSQ-------SLQLTERMTLSQNNSILRIDPIKRE-DAGEY 178
Query: 564 QCRAKNQLKTRYS-SAQLRVL 583
QC N + R S S +L ++
Sbjct: 179 QCEISNPVSVRRSNSIKLDII 199
Score = 80.9 bits (199), Expect = 2e-17
Identities = 33/152 (21%), Positives = 51/152 (33%), Gaps = 13/152 (8%)
Query: 344 RVFVSYDGALYFSALEQIDAGNYSCNVQSKVSDTGRNGPFFPLKVFPHSNFQQLKFPNNF 403
R + +G+L F + D G Y+ ++ + + F
Sbjct: 64 REIIYSNGSLLFQMITMKDMGVYTLDMTDENYRRTQA---------TVRFHVHQPVTQPF 114
Query: 404 PKTFPEAPKAGDKVRLECVAFGYPVPSYNWTRRGSPLPRN--AYFENFNRILTIPNVKVE 461
+ K D V L C++ + W L N IL I +K E
Sbjct: 115 LQVTNTTVKELDSVTLTCLSNDIG-ANIQWLFNSQSLQLTERMTLSQNNSILRIDPIKRE 173
Query: 462 DQGEYICRASNDRSALES-SVTISIQAEPNFT 492
D GEY C SN S S S+ + I +P+
Sbjct: 174 DAGEYQCEISNPVSVRRSNSIKLDIIFDPHHH 205
Score = 75.9 bits (186), Expect = 1e-15
Identities = 27/177 (15%), Positives = 63/177 (35%), Gaps = 15/177 (8%)
Query: 210 NDITLSCYAGGYPNPSYEWFKED----------YVQDRLVANLIDPLSDKRFTLSGGNLI 259
N++ L + ++ W+K + +V + + S + S G+L+
Sbjct: 15 NNVLLLVHNLPLALGAFAWYKGNTTAIDKEIARFVPNSNMNFTGQAYSGREIIYSNGSLL 74
Query: 260 INDPRQVEDRGSYHCKASNKFGSIISESVQLAFGFIGEFNLKRAPEIGNQNWGKAMFCDP 319
+D G Y +++ +V+ + ++
Sbjct: 75 FQMITM-KDMGVYTLDMTDENYRRTQATVRFHVHQPVTQPFLQVTNT-TVKELDSVTLTC 132
Query: 320 PTNYPGVNYYWARDYFPNFVEEDKRVFVSYDGA-LYFSALEQIDAGNYSCNVQSKVS 375
+N G N W + ++ +R+ +S + + L +++ DAG Y C + + VS
Sbjct: 133 LSNDIGANIQWLFNSQS--LQLTERMTLSQNNSILRIDPIKREDAGEYQCEISNPVS 187
Score = 53.5 bits (128), Expect = 4e-08
Identities = 16/81 (19%), Positives = 31/81 (38%), Gaps = 10/81 (12%)
Query: 210 NDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVEDR 269
+ +TL+C + + +W + + + L I+ ++ ED
Sbjct: 126 DSVTLTCLSND-IGANIQWLFNS--------QSLQLTERMTLSQNNSILRIDPIKR-EDA 175
Query: 270 GSYHCKASNKFGSIISESVQL 290
G Y C+ SN S S++L
Sbjct: 176 GEYQCEISNPVSVRRSNSIKL 196
>1f2q_A High affinity immunoglobulin epsilon receptor ALP subunit;
immunoglobulin fold, glycoprotein, IGE-binding Pro
immune system; HET: NAG MAN; 2.40A {Homo sapiens} SCOP:
b.1.1.4 b.1.1.4 PDB: 1j86_A* 1rpq_A* 2y7q_A* 1f6a_A*
1j88_A* 1j89_A* 1j87_A*
Length = 176
Score = 103 bits (259), Expect = 1e-25
Identities = 37/177 (20%), Positives = 60/177 (33%), Gaps = 28/177 (15%)
Query: 506 LTWTCEAFGVP-DVTYSWFRNGELLNSETLPLEDQDRYFIQDNVLTIRYLNPERDPAMYQ 564
+T TC + WF NG L ++ L I E D Y+
Sbjct: 22 VTLTCNGNNFFEVSSTKWFHNGSLSEE-------------TNSSLNIVNAKFE-DSGEYK 67
Query: 565 CRAKNQLKTRYSSAQLRVLTLKPSFKKRPLESETYAGEGGNVTIFCNPEA-APKPKFVWK 623
C+ + S + + + S EG + + C+ K ++
Sbjct: 68 CQHQQ----VNESEPVYLEVFSDWLLLQA--SAEVVMEGQPLFLRCHGWRNWDVYKVIYY 121
Query: 624 KDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTATNVHGMDESKG-RLIVLHGP 679
KDG + EN N+ I+ + +DSG Y CT ES+ + V+ P
Sbjct: 122 KDGEALKYWY-----ENHNISITNATVEDSGTYYCTGKVWQLDYESEPLNITVIKAP 173
Score = 91.9 bits (228), Expect = 1e-21
Identities = 39/195 (20%), Positives = 63/195 (32%), Gaps = 27/195 (13%)
Query: 586 KPSFKKRPLESETYAGEGGNVTIFCNPEAAPKP-KFVWKKDGNIIGSGGRRKIFENGNLL 644
KP P +G NVT+ CN + W +G++ N +L
Sbjct: 4 KPKVSLNP--PWNRIFKGENVTLTCNGNNFFEVSSTKWFHNGSLSEE-------TNSSLN 54
Query: 645 ISPVSRDDSGIYSCTATNVHGMDESKGRLIVLHGPSYYEQLPPKITIAAHRNLQLRCSAH 704
I +DSG Y C V+ + L V + + + L LRC
Sbjct: 55 IVNAKFEDSGEYKCQHQQVNESEPV--YLEVFSDWLLLQ--ASAEVVMEGQPLFLRCHGW 110
Query: 705 TEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEITNASFADAGEYECVVKSTVG 764
+ I+ +G + + + ITNA+ D+G Y C K
Sbjct: 111 RNWDV-YKVIYYKDGEALKYWY-----------ENHNISITNATVEDSGTYYCTGKVWQL 158
Query: 765 KISTKT-TVIVEGPP 778
++ + V P
Sbjct: 159 DYESEPLNITVIKAP 173
Score = 88.4 bits (219), Expect = 2e-20
Identities = 39/173 (22%), Positives = 62/173 (35%), Gaps = 24/173 (13%)
Query: 414 GDKVRLECVAFG-YPVPSYNWTRRGSPLPRNAYFENFNRILTIPNVKVEDQGEYICRASN 472
G+ V L C + V S W GS N L I N K ED GEY C+
Sbjct: 19 GENVTLTCNGNNFFEVSSTKWFHNGSLSEET------NSSLNIVNAKFEDSGEYKCQHQQ 72
Query: 473 DRSALESSVTISIQAEPNFTIPLTDKHMDNQADLTWTCEAFGVPDV-TYSWFRNGELLNS 531
V + + ++ + M+ Q L C + DV ++++GE L
Sbjct: 73 --VNESEPVYLEVFSDWLLLQASAEVVMEGQ-PLFLRCHGWRNWDVYKVIYYKDGEAL-- 127
Query: 532 ETLPLEDQDRYFIQDNVLTIRYLNPERDPAMYQCRAKNQLKTRYSS-AQLRVL 583
+Y+ +++ ++I E D Y C K S + V+
Sbjct: 128 ---------KYWYENHNISITNATVE-DSGTYYCTGKVWQLDYESEPLNITVI 170
Score = 84.6 bits (209), Expect = 6e-19
Identities = 33/176 (18%), Positives = 56/176 (31%), Gaps = 31/176 (17%)
Query: 317 CDPPTNYPGVNYYWARDYFPNFVEEDKRVFVSYDGALYFSALEQIDAGNYSCNVQ-SKVS 375
C+ + + W + + + +L + D+G Y C Q S
Sbjct: 26 CNGNNFFEVSSTKWFHN---------GSLSEETNSSLNIVNAKFEDSGEYKCQHQQVNES 76
Query: 376 DTGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPEAPKAGDKVRLECVAF-GYPVPSYNWT 434
+ L+VF Q E G + L C + + V +
Sbjct: 77 EPVY------LEVFSDWLLLQAS---------AEVVMEGQPLFLRCHGWRNWDVYKVIYY 121
Query: 435 RRGSPLPRNAYFENFNRILTIPNVKVEDQGEYICRASNDRSALESS-VTISIQAEP 489
+ G L + N ++I N VED G Y C + ES + I++ P
Sbjct: 122 KDGEALK----YWYENHNISITNATVEDSGTYYCTGKVWQLDYESEPLNITVIKAP 173
Score = 54.1 bits (130), Expect = 2e-08
Identities = 29/166 (17%), Positives = 53/166 (31%), Gaps = 29/166 (17%)
Query: 212 ITLSCYA-GGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVEDRG 270
+TL+C + S +WF + +L I + + ED G
Sbjct: 22 VTLTCNGNNFFEVSSTKWFHNG----------------SLSEETNSSLNIVNAK-FEDSG 64
Query: 271 SYHCKASNKFGSIISESVQLAFGFIGEFNLKRAPEIGNQNWGKAMFCDPPTNYPGVNYYW 330
Y C+ SE V L F L+ + E+ + + C N+ +
Sbjct: 65 EYKCQHQQ---VNESEPVYLEV-FSDWLLLQASAEVVMEGQPLFLRCHGWRNWDVYKVIY 120
Query: 331 ARDYFPNFVEEDKRVFVSYDGALYFSALEQIDAGNYSCNVQSKVSD 376
+D E + + + + + D+G Y C + D
Sbjct: 121 YKD------GEALKYWYE-NHNISITNATVEDSGTYYCTGKVWQLD 159
Score = 50.7 bits (121), Expect = 2e-07
Identities = 15/106 (14%), Positives = 33/106 (31%), Gaps = 22/106 (20%)
Query: 186 IPRGPYFIKQPTDVVFDLSKRSILNDITLSCYA-GGYPNPSYEWFKEDYVQDRLVANLID 244
+ ++ +VV + L C+ + ++K+
Sbjct: 83 VFSDWLLLQASAEVVM------EGQPLFLRCHGWRNWDVYKVIYYKDG------------ 124
Query: 245 PLSDKRFTLSGGNLIINDPRQVEDRGSYHCKASNKFGSIISESVQL 290
++ N+ I + VED G+Y+C SE + +
Sbjct: 125 --EALKYWYENHNISITNA-TVEDSGTYYCTGKVWQLDYESEPLNI 167
>2ny1_B T-cell surface glycoprotein CD4; HIV, GP120, CD4, viral
protein-immune system compl; HET: NAG SUC; 1.99A {Homo
sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 2nxz_B* 2ny0_B*
2nxy_B* 2ny2_B* 2ny3_B* 2ny4_B* 2ny5_C* 2ny6_B* 3jwd_C*
3jwo_C* 1g9m_C* 1g9n_C* 1gc1_C* 1rzj_C* 1rzk_C* 3o2d_A
3cd4_A 3lqa_C* 2b4c_C* 2qad_B* ...
Length = 184
Score = 103 bits (257), Expect = 2e-25
Identities = 32/198 (16%), Positives = 55/198 (27%), Gaps = 43/198 (21%)
Query: 412 KAGDKVRLECVAFGYPVPSYNWTRRGSPL---------------------PRNAYFENFN 450
K GD V L C A ++W R + ++ N
Sbjct: 8 KKGDTVELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQGN 67
Query: 451 RILTIPNVKVEDQGEYICRASNDRSALESSVTISIQAEPNFTIPLTDKHMDNQADLTWTC 510
L I N+K+ED YIC + + ++ V + A + + LT T
Sbjct: 68 FPLIIKNLKIEDSDTYICEVEDQKEEVQLLV-FGLTANSDTHLLQGQ-------SLTLTL 119
Query: 511 EAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQDNVLTIRYLNPERDPAMYQCRAKNQ 570
E+ + L++ L + D + C
Sbjct: 120 ESPPGSSPSVQCRSPRGKNIQG-------------GKTLSVSQLELQ-DSGTWTCTVLQN 165
Query: 571 LKTRYSSAQLRVLTLKPS 588
K + VL + +
Sbjct: 166 QKKVEFKIDIVVLAFQKA 183
Score = 101 bits (252), Expect = 1e-24
Identities = 36/186 (19%), Positives = 64/186 (34%), Gaps = 33/186 (17%)
Query: 505 DLTWTCEAFGVPDVTYSWFRNGELLNSE-------TLPLEDQDRYFIQ-------DNVLT 550
+ TC A + + W + ++ P + DR + + L
Sbjct: 12 TVELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQGNFPLI 71
Query: 551 IRYLNPERDPAMYQCRAKNQLKTRYSSAQLRVLTLKPSFKKRPLESETYAGEGGNVTIFC 610
I+ L E D Y C ++Q + QL V L + S+T+ +G ++T+
Sbjct: 72 IKNLKIE-DSDTYICEVEDQKEE----VQLLVFGLTAN-------SDTHLLQGQSLTLTL 119
Query: 611 NPEAAPKPKFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTATNVHGMDESK 670
P + + I L +S + DSG ++CT E K
Sbjct: 120 ESPPGSSPSVQCRSPRG-------KNIQGGKTLSVSQLELQDSGTWTCTVLQNQKKVEFK 172
Query: 671 GRLIVL 676
++VL
Sbjct: 173 IDIVVL 178
Score = 92.3 bits (229), Expect = 1e-21
Identities = 27/200 (13%), Positives = 48/200 (24%), Gaps = 44/200 (22%)
Query: 599 YAGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFE------------------- 639
+G V + C +F WK I G +
Sbjct: 6 LGKKGDTVELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQ 65
Query: 640 -NGNLLISPVSRDDSGIYSCTATNVHGMDESKGRLIVLHGPSYYEQLPPKITIAAHRNLQ 698
N L+I + +DS Y C + + + + ++L
Sbjct: 66 GNFPLIIKNLKIEDSDTYICEVEDQKEEVQLLVFGLTA---------NSDTHLLQGQSLT 116
Query: 699 LRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEITNASFADAGEYECV 758
L + V G L ++ D+G + C
Sbjct: 117 LTLESPPGSSPSV--QCRSPR-------------GKNIQGGKTLSVSQLELQDSGTWTCT 161
Query: 759 VKSTVGKISTKTTVIVEGPP 778
V K+ K ++V
Sbjct: 162 VLQNQKKVEFKIDIVVLAFQ 181
Score = 84.6 bits (209), Expect = 7e-19
Identities = 22/151 (14%), Positives = 50/151 (33%), Gaps = 25/151 (16%)
Query: 339 VEEDKRVFVSYDGALYFSALEQIDAGNYSCNVQSKVSDTGRNGPFFPLKVFPHSNFQQLK 398
+ + ++ + L L+ D+ Y C V+ + + F L ++ Q
Sbjct: 56 ADSRRSLWDQGNFPLIIKNLKIEDSDTYICEVEDQKEEV--QLLVFGLTANSDTHLLQ-- 111
Query: 399 FPNNFPKTFPEAPKAGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYFENFNRILTIPNV 458
G + L + PS PR + + L++ +
Sbjct: 112 ---------------GQSLTLTLESPPGSSPSVQCRS-----PRGKNIQG-GKTLSVSQL 150
Query: 459 KVEDQGEYICRASNDRSALESSVTISIQAEP 489
+++D G + C ++ +E + I + A
Sbjct: 151 ELQDSGTWTCTVLQNQKKVEFKIDIVVLAFQ 181
Score = 54.6 bits (131), Expect = 1e-08
Identities = 28/177 (15%), Positives = 53/177 (29%), Gaps = 33/177 (18%)
Query: 210 NDITLSCYAGGYPNPSYEWFKED-----YVQDRLVANLIDPLSDK------RFTLSGGNL 258
+ + L+C A + + W + Q + L+D+ + L
Sbjct: 11 DTVELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQGNFPL 70
Query: 259 IINDPRQVEDRGSYHCKASNKFGSIISESVQLAFGFIGEFNLKRAPEIGNQNWGKAMF-C 317
II + ++ED +Y C+ ++ E VQL F L +
Sbjct: 71 IIKNL-KIEDSDTYICEVEDQ-----KEEVQL-----LVFGLTANSDTHLLQGQSLTLTL 119
Query: 318 DPPTNYPGVNYYWARDYFPNFVEEDKRVFVSYDGALYFSALEQIDAGNYSCNVQSKV 374
+ + + + L S LE D+G ++C V
Sbjct: 120 E-SPPGSSPSVQCRS---------PRGKNIQGGKTLSVSQLELQDSGTWTCTVLQNQ 166
Score = 53.1 bits (127), Expect = 4e-08
Identities = 9/80 (11%), Positives = 25/80 (31%), Gaps = 18/80 (22%)
Query: 211 DITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVEDRG 270
+TL+ + +PS + + G L ++ +++D G
Sbjct: 114 SLTLTLESPPGSSPSVQCRSP----------------RGKNIQGGKTLSVSQL-ELQDSG 156
Query: 271 SYHCKASNKFGSIISESVQL 290
++ C + + +
Sbjct: 157 TWTCTVLQNQKK-VEFKIDI 175
>1x4z_A Biregional cell adhesion molecule-related/DOWN- regulated oncogenes
(CDON)binding...; fibronectin type III, FN3; NMR {Mus
musculus} SCOP: b.1.2.1
Length = 121
Score = 100 bits (252), Expect = 2e-25
Identities = 26/120 (21%), Positives = 41/120 (34%), Gaps = 9/120 (7%)
Query: 767 STKTTVIVEGPPGLPGGVQVVEVHKTSATIQWTDGATNGRPITHYKIIARTNWNS-TWFN 825
++ PP P + +TS + W G PI +++ + W
Sbjct: 7 GSQPDHGRLSPPEAPDRPTISTASETSVYVTWIPRGNGGFPIQSFRVEYKKLKKVGDWIL 66
Query: 826 VSEHVIGKEVDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPSPQYNTPADKP 885
+ + I L +Y+F+V A N LG EPS+PS Y P
Sbjct: 67 ATSAIPPSR-------LSVEITG-LEKGISYKFRVRALNMLGESEPSAPSRPYVVSGSGP 118
Score = 36.2 bits (84), Expect = 0.009
Identities = 20/115 (17%), Positives = 38/115 (33%), Gaps = 20/115 (17%)
Query: 871 PSSPSPQYNTPADKPYQAPSRIGGGGGKIGDLS-----ISWEPLPREKQNAPNIYYKIFW 925
SS S + P +AP R I S ++W P P +++ +
Sbjct: 4 GSSGSQPDHGRLSPP-EAPDRP-----TISTASETSVYVTWIPRGNG--GFPIQSFRVEY 55
Query: 926 RKKNDT-EFQSETLKEYGNVGIAVVR--IPSEFYYTEYEVKVQAINDVGPGPESE 977
+K ++ T + + Y+ +V+A+N +G S
Sbjct: 56 KKLKKVGDWILATSAIPPSRLSVEITGLEK----GISYKFRVRALNMLGESEPSA 106
>2yux_A Myosin-binding protein C, SLOW-type; fibronectin III domain,
structural genomics., NPPSFA; NMR {Homo sapiens}
Length = 120
Score = 100 bits (252), Expect = 3e-25
Identities = 32/126 (25%), Positives = 49/126 (38%), Gaps = 13/126 (10%)
Query: 764 GKISTKTTVIVEGPPGLPGGVQVVEVHKTSATIQWTDGATNGR-PITHYKIIARTNWNST 822
G + + PG P V++ +V + + WT +G IT Y I +
Sbjct: 4 GSSGASIDIQIIDRPGPPQIVKIEDVWGENVALTWTPPKDDGNAAITGYTIQKADKKSME 63
Query: 823 WFNVSEHVIGKEVDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPSPQYNTPA 882
WF V EH R A+I LV + Y F+V + N G E ++ + + A
Sbjct: 64 WFTVIEHY---------HRTSATITE-LVIGNEYYFRVFSENMCGLSEDATMTKESAVIA 113
Query: 883 --DKPY 886
K Y
Sbjct: 114 RDGKIY 119
Score = 33.9 bits (78), Expect = 0.060
Identities = 17/79 (21%), Positives = 34/79 (43%), Gaps = 9/79 (11%)
Query: 902 LSISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETLKEYGNVGIAVVR--IPSEFYYTE 959
++++W P P++ NA Y I K E+ T+ E+ + A + + E
Sbjct: 34 VALTWTP-PKDDGNAAITGYTIQKADKKSMEWF--TVIEHYHRTSATITELVI----GNE 86
Query: 960 YEVKVQAINDVGPGPESEV 978
Y +V + N G ++ +
Sbjct: 87 YYFRVFSENMCGLSEDATM 105
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA,
receptor-ligand complex transferase; HET: NAG NDG MAN
BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Length = 347
Score = 107 bits (268), Expect = 3e-25
Identities = 28/198 (14%), Positives = 57/198 (28%), Gaps = 15/198 (7%)
Query: 587 PSFKKRPLESETYAGEGGNVTIFCNPEAAPKPKFVWKK-DGNIIGSGGRRKIFENGNLLI 645
P+ K + G +V + C E + W + + + + L +
Sbjct: 159 PTLKVQV--PNASVDVGDDVLLRCQVEGRGLEQAGWILTELEQSATVMKSGGLPSLGLTL 216
Query: 646 SPVSR-DDSGIYSCTATNVHGMDESKGRLIVLHGPSYYEQLPPKITIAAHRNLQLRCSAH 704
+ V+ + +C A N G E ++ V + T + + S
Sbjct: 217 ANVTSDLNRKNVTCWAENDVGRAEVSVQVNV-----SFPASVQLHTAVEMHHWCIPFSVD 271
Query: 705 TEELLDVAYIWTHNGVRIGNMDL----NELETPNINIDGGLLEITNASFADAGEYECVVK 760
+ + W NG + N + G L + + + G Y +
Sbjct: 272 GQPAPSLR--WLFNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQPTHVNNGNYTLLAA 329
Query: 761 STVGKISTKTTVIVEGPP 778
+ G+ S P
Sbjct: 330 NPFGQASASIMAAFMDNP 347
Score = 99.4 bits (247), Expect = 2e-22
Identities = 28/201 (13%), Positives = 61/201 (30%), Gaps = 22/201 (10%)
Query: 489 PNFTIPLTDKHMDNQADLTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQDNV 548
P + + + +D D+ C+ G W ++ +
Sbjct: 159 PTLKVQVPNASVDVGDDVLLRCQVEGRGLEQAGWILTELEQSATV-----MKSGGLPSLG 213
Query: 549 LTIRYLNPERDPAMYQCRAKNQLKTRYSSAQLRVLTLKPSFKKRPLESETYAGEGGNVTI 608
LT+ + + + C A+N + S Q+ V +E I
Sbjct: 214 LTLANVTSDLNRKNVTCWAENDVGRAEVSVQVNVSFPASVQLHTAVEMHH-------WCI 266
Query: 609 FCNPEAAPKPKFVWKKDGNII----------GSGGRRKIFENGNLLISPVSRDDSGIYSC 658
+ + P P W +G+++ + +G L ++ + ++G Y+
Sbjct: 267 PFSVDGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQPTHVNNGNYTL 326
Query: 659 TATNVHGMDESKGRLIVLHGP 679
A N G + + P
Sbjct: 327 LAANPFGQASASIMAAFMDNP 347
Score = 87.9 bits (217), Expect = 1e-18
Identities = 34/178 (19%), Positives = 51/178 (28%), Gaps = 12/178 (6%)
Query: 413 AGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYFENF--NRILTIPNVKVE-DQGEYICR 469
GD V L C G + W + LT+ NV + ++ C
Sbjct: 172 VGDDVLLRCQVEGRGLEQAGWILTELEQSATVMKSGGLPSLGLTLANVTSDLNRKNVTCW 231
Query: 470 ASNDRSALESSVTISIQAEPNFTIPLTDKHMDNQADLTWTCEAFGVPDVTYSWFRNGELL 529
A ND E SV + +F + G P + W NG +L
Sbjct: 232 AENDVGRAEVSVQV----NVSFPASVQLHTAVEMHHWCIPFSVDGQPAPSLRWLFNGSVL 287
Query: 530 NS----ETLPLEDQDRYFIQDNVLTIRYLNPERDPAMYQCRAKNQLKTRYSSAQLRVL 583
N T LE ++ L + + Y A N +S +
Sbjct: 288 NETSFIFTEFLEPAANETVRHGCLRLNQPTHV-NNGNYTLLAANPFGQASASIMAAFM 344
Score = 75.9 bits (186), Expect = 1e-14
Identities = 26/172 (15%), Positives = 45/172 (26%), Gaps = 26/172 (15%)
Query: 329 YWARDYFPNFVEEDKRVFVSYDGALYFSALEQIDAGNYSCNVQSKVSDTGRNGPFFPLKV 388
W K + G + ++ N +C ++ V GR + V
Sbjct: 191 GWILTELEQSATVMKSGGLPSLGLTLANVTSDLNRKNVTCWAENDV---GRAEVSVQVNV 247
Query: 389 FPHSNFQQLKFPNNFPKTFPEAPKAGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYFEN 448
++ Q P G P PS W GS L ++
Sbjct: 248 SFPASVQLHTAVEMHHWCIP------------FSVDGQPAPSLRWLFNGSVLNETSFIFT 295
Query: 449 F-----------NRILTIPNVKVEDQGEYICRASNDRSALESSVTISIQAEP 489
+ L + + G Y A+N +S+ + P
Sbjct: 296 EFLEPAANETVRHGCLRLNQPTHVNNGNYTLLAANPFGQASASIMAAFMDNP 347
Score = 67.8 bits (165), Expect = 4e-12
Identities = 28/232 (12%), Positives = 53/232 (22%), Gaps = 26/232 (11%)
Query: 155 FICEASIQKLHYLLNDDRTYQYGMDIENPDKIPRGPYFIKQPTDVVFDLSKRSIL----N 210
C +++ L + ++ + P + + +
Sbjct: 115 LHCSCALRWLQRWEEEGLGGVPEQKLQCHGQGPLAHMPNASCGVPTLKVQVPNASVDVGD 174
Query: 211 DITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVEDRG 270
D+ L C G W + K L L + + +R
Sbjct: 175 DVLLRCQVEGRGLEQAGWILTE--------LEQSATVMKSGGLPSLGLTLANVTSDLNRK 226
Query: 271 SYHCKASNKFGSIISESVQLAFGFIGEFNLKRAPEIGNQNWGKAMFCDPPTNYPGVNYYW 330
+ C A N G SVQ+ F P + W
Sbjct: 227 NVTCWAENDVG-RAEVSVQVNVSF-----PASVQLHTAVEMHHWCIPFSVDGQPAPSLRW 280
Query: 331 ARD--------YFPNFVEEDKRVFVSYDGALYFSALEQIDAGNYSCNVQSKV 374
+ + E G L + ++ GNY+ +
Sbjct: 281 LFNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQPTHVNNGNYTLLAANPF 332
Score = 54.4 bits (130), Expect = 8e-08
Identities = 21/83 (25%), Positives = 30/83 (36%), Gaps = 3/83 (3%)
Query: 211 DITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFT-LSGGNLIINDPRQVEDR 269
+ G P PS W V + + L + G L +N P +
Sbjct: 263 HWCIPFSVDGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQP-THVNN 321
Query: 270 GSYHCKASNKFGSIISESVQLAF 292
G+Y A+N FG S S+ AF
Sbjct: 322 GNYTLLAANPFGQ-ASASIMAAF 343
>3fl7_A Ephrin receptor; ATP-binding, kinase, nucleotide-binding, transfera
phosphorylation, transmembrane, tyrosine-protein kinase,
glycoprotein; HET: NAG; 2.50A {Homo sapiens} PDB:
2x10_A* 2x11_A 3mx0_A* 3mbw_A*
Length = 536
Score = 110 bits (275), Expect = 3e-25
Identities = 50/304 (16%), Positives = 83/304 (27%), Gaps = 31/304 (10%)
Query: 689 ITIAAHRNLQLRCSAHTEELLDVAYIWTHNG----VRIGNMDLNELETPNINIDGGLLEI 744
+ ++ C+ E L+ + G + L
Sbjct: 240 VVPPGGEEPRMHCAVDGEWLVPIGQCLCQAGYEKVEDACQACSPGFFKFEASESPCLECP 299
Query: 745 TNASFADAGEYECVVKSTVGKISTKTTVIVEGPPGLPGGVQVVEVHKTSATIQWTDGA-T 803
+ + G C + + + P ++WT +
Sbjct: 300 EHTLPSPEGATSCECEEGFFRAPQDPASMPCTRPPSAPHYLTAVGMGAKVELRWTPPQDS 359
Query: 804 NGRPITHYKIIARTNW--NSTWFNVSEHVIGKEVDRYTGRKEASIENVLVPWSTYEFKVI 861
GR Y + W + V E R ++ + L P Y F V
Sbjct: 360 GGREDIVYSVTCEQCWPESGECGPCEASVRYSEPPHGLTRTSVTVSD-LEPHMNYTFTVE 418
Query: 862 AGNELGYGEPSSPSPQYNTPADKPYQAPSRIGGGGGKIGDLSISWEPLPREKQNAPNIYY 921
A N + S P ++ G LS+SW P Q + Y
Sbjct: 419 ARNGVSGLVTSRSFRT--ASVSINQTEPPKVRLEGRSTTSLSVSWSIPPP--QQSRVWKY 474
Query: 922 KIFWRKKNDTEFQSETLKEYGNVGIAVVRIPSEFY-------YTEYEVKVQAINDVGPGP 974
++ +RKK D+ + V R T Y V+VQA+ G G
Sbjct: 475 EVTYRKKGDSNSYN------------VRRTEGFSVTLDDLAPDTTYLVQVQALTQEGQGA 522
Query: 975 ESEV 978
S+V
Sbjct: 523 GSKV 526
Score = 69.4 bits (169), Expect = 3e-12
Identities = 44/313 (14%), Positives = 81/313 (25%), Gaps = 55/313 (17%)
Query: 610 CNPEAAPKPKFVWKKDGNIIGSGGRRK------------------------IFENGNLLI 645
P +P+ DG + G+
Sbjct: 240 VVPPGGEEPRMHCAVDGEWLVPIGQCLCQAGYEKVEDACQACSPGFFKFEASESPCLECP 299
Query: 646 SPVSRDDSGIYSCTATNVHGMDESKGRLIVLHGPSYYEQLPPKITIAAHRNLQLRCS--- 702
G SC + P P A ++
Sbjct: 300 EHTLPSPEGATSCECEEGFFRAPQDPASMPCTRPP----SAPHYLTAVGMGAKVELRWTP 355
Query: 703 -AHTEELLDVAYI--WTHNGVRIGNMDLNELETPNINIDGGLLEITNASFAD---AGEYE 756
+ D+ Y G E GL T+ + +D Y
Sbjct: 356 PQDSGGREDIVYSVTCEQCWPESGECGPCEASVRYSEPPHGLTR-TSVTVSDLEPHMNYT 414
Query: 757 CVVKST--VGKISTKTTVIV---EGPPGLPGGVQVVEVHKTSATIQWTDGATNGRPITHY 811
V++ V + T + P V++ TS ++ W+ + Y
Sbjct: 415 FTVEARNGVSGLVTSRSFRTASVSINQTEPPKVRLEGRSTTSLSVSWSIPPPQQSRVWKY 474
Query: 812 KIIARTNWNSTWFNVSEHVIGKEVDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEP 871
++ R +S +NV T ++++ L P +TY +V A + G G
Sbjct: 475 EVTYRKKGDSNSYNVRR----------TEGFSVTLDD-LAPDTTYLVQVQALTQEGQGAG 523
Query: 872 SSPSPQYNTPADK 884
S ++ T + +
Sbjct: 524 SKVH-EFQTLSPE 535
>2dju_A Receptor-type tyrosine-protein phosphatase F; LAR protein,
leukocyte antigen related, structural genomics, NPPSFA;
NMR {Homo sapiens}
Length = 106
Score = 99.3 bits (248), Expect = 5e-25
Identities = 32/115 (27%), Positives = 41/115 (35%), Gaps = 12/115 (10%)
Query: 774 VEGPPGLPGGVQVVEVHKTSATIQWTDGATNGRPITHYKIIARTNWNSTWFNVSEHVIGK 833
P P + V E TS T+ W G N P+T+Y I R F + V
Sbjct: 4 GSSGPKPPIDLVVTETTATSVTLTWDSG--NSEPVTYYGIQYRAAGTEGPFQEVDGVATT 61
Query: 834 EVDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPSPQYNTPADKPYQA 888
SI L P+S Y F+V+A N +G G PS P
Sbjct: 62 R---------YSIGG-LSPFSEYAFRVLAVNSIGRGPPSEAVRARTGEQSGPSSG 106
Score = 40.0 bits (94), Expect = 4e-04
Identities = 19/84 (22%), Positives = 33/84 (39%), Gaps = 22/84 (26%)
Query: 902 LSISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETLKEYGNVGIAVVRIPSEFY----- 956
++++W+ + P YY I +R E V + + Y
Sbjct: 24 VTLTWDS----GNSEPVTYYGIQYRAAGTEGPFQE-----------VDGVATTRYSIGGL 68
Query: 957 --YTEYEVKVQAINDVGPGPESEV 978
++EY +V A+N +G GP SE
Sbjct: 69 SPFSEYAFRVLAVNSIGRGPPSEA 92
>1wf5_A Sidekick 2 protein; FNIII domain, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: b.1.2.1
Length = 121
Score = 97.4 bits (243), Expect = 4e-24
Identities = 26/126 (20%), Positives = 49/126 (38%), Gaps = 11/126 (8%)
Query: 762 TVGKISTKTTVIVEGPPGLPGG--VQVVEVHKTSATIQWTDGATNGRPITHYKIIARTNW 819
+ G + V P P + V + + + WT P+ Y + N
Sbjct: 2 SSGSSGRSAHLRVRQLPHAPEHPVATLSTVERRAINLTWTKPFDGNSPLIRYILEMSEN- 60
Query: 820 NSTWFNVSEHVIGKEVDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPSPQYN 879
N+ W + V K +++ LVP +Y+F++ A N++G G+ S + + +
Sbjct: 61 NAPWTVLLASVDPKAT-------SVTVKG-LVPARSYQFRLCAVNDVGKGQFSKDTERVS 112
Query: 880 TPADKP 885
P P
Sbjct: 113 LPESGP 118
Score = 37.3 bits (87), Expect = 0.004
Identities = 21/100 (21%), Positives = 37/100 (37%), Gaps = 12/100 (12%)
Query: 883 DKPYQAPSRIGGGGGKIGDLSI--SWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETLKE 940
P AP + +I +W P + N+P I Y + +N+ +
Sbjct: 16 QLP-HAPEHPVATLSTVERRAINLTWTK-PFDG-NSPLIRYILE-MSENNAPWTVLLASV 71
Query: 941 YGNVGIAVVR--IPSEFYYTEYEVKVQAINDVGPGPESEV 978
V+ +P Y+ ++ A+NDVG G S+
Sbjct: 72 DPKATSVTVKGLVP----ARSYQFRLCAVNDVGKGQFSKD 107
>3jz7_A MCAR, CAR, coxsackievirus and adenovirus receptor homolog; cell
adhesion molecule, immunoglobuline superfamily,
alternative splicing, cell adhesion; 2.19A {Mus
musculus} PDB: 3mj7_B* 2npl_X
Length = 214
Score = 99.8 bits (248), Expect = 8e-24
Identities = 34/137 (24%), Positives = 53/137 (38%), Gaps = 7/137 (5%)
Query: 546 DNVLTIRYLNPERDPAMYQCRAKNQLKTRYSSAQLRVLTLKPSFKKRPLESETYAGEGGN 605
D + + L D YQC+ K L VL KPS + ++ G +
Sbjct: 83 DASINVTNLQLS-DIGTYQCKVKKAPGVANKKFLLTVLV-KPSGTRCFVDGSEE--IGND 138
Query: 606 VTIFCNPEA-APKPKFVWKKDGN-IIGSGGRRKIFENGNLLISPVSRDDSGIYSCTATNV 663
+ C P+ + +F W+K + + + + S + SG YSCT N
Sbjct: 139 FKLKCEPKEGSLPLQFEWQKLSDSQTMPTPWLAEMTSPVISVKNASSEYSGTYSCTVQNR 198
Query: 664 HGMDESKGRLIVLHGPS 680
G D+ RL V+ PS
Sbjct: 199 VGSDQCMLRLDVVP-PS 214
Score = 93.2 bits (231), Expect = 1e-21
Identities = 35/214 (16%), Positives = 61/214 (28%), Gaps = 38/214 (17%)
Query: 595 ESETYAGEGGNVTIFC----NPEAAPKPKFVWKKDGNIIGSG------------------ 632
E +G + C +PE W +
Sbjct: 7 EQRIEKAKGETAYLPCKFTLSPEDQGPLDIEWLISPSDNQIVDQVIILYSGDKIYDNYYP 66
Query: 633 ---GRRKIFE------NGNLLISPVSRDDSGIYSCTATNVHGMDESKGRLIVLHGPSYYE 683
GR + ++ ++ + D G Y C G+ K L VL PS
Sbjct: 67 DLKGRVHFTSNDVKSGDASINVTNLQLSDIGTYQCKVKKAPGVANKKFLLTVLVKPSG-T 125
Query: 684 QLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLE 743
+ + + +L+C E L + + W + ++
Sbjct: 126 RCFVDGSEEIGNDFKLKCEP-KEGSLPLQFEWQKLSD-----SQTMPTPWLAEMTSPVIS 179
Query: 744 ITNASFADAGEYECVVKSTVGKISTKTTVIVEGP 777
+ NAS +G Y C V++ VG + V P
Sbjct: 180 VKNASSEYSGTYSCTVQNRVGSDQCMLRLDVVPP 213
Score = 92.1 bits (228), Expect = 3e-21
Identities = 34/214 (15%), Positives = 65/214 (30%), Gaps = 42/214 (19%)
Query: 406 TFPEAP---KAGDKVRLECVAFGYPVPSYN----WTRRGSPLPR---------------N 443
T PE G+ L C P W S N
Sbjct: 4 TTPEQRIEKAKGETAYLPCKFTLSPEDQGPLDIEWLISPSDNQIVDQVIILYSGDKIYDN 63
Query: 444 AYFENFNRI-------------LTIPNVKVEDQGEYICRASNDRSALESSVTISIQAEPN 490
Y + R+ + + N+++ D G Y C+ +++ +P+
Sbjct: 64 YYPDLKGRVHFTSNDVKSGDASINVTNLQLSDIGTYQCKVKKAPGVANKKFLLTVLVKPS 123
Query: 491 FTIPLTDKHMDNQADLTWTCEA-FGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQDNVL 549
T D + D CE G + + W + + T L + V+
Sbjct: 124 GTRCFVDGSEEIGNDFKLKCEPKEGSLPLQFEWQKLSDSQTMPTPWLAEMT-----SPVI 178
Query: 550 TIRYLNPERDPAMYQCRAKNQLKTRYSSAQLRVL 583
+++ + E Y C +N++ + +L V+
Sbjct: 179 SVKNASSE-YSGTYSCTVQNRVGSDQCMLRLDVV 211
Score = 87.0 bits (215), Expect = 2e-19
Identities = 32/188 (17%), Positives = 63/188 (33%), Gaps = 21/188 (11%)
Query: 311 WGKAMFCDPPTNYPGVNYYWARDYFPNFVEEDKRV------FVSYDGALYFSALEQIDAG 364
W + + + + Y + Y + + RV S D ++ + L+ D G
Sbjct: 38 WLISPSDNQIVDQVIILYSGDKIYDNYYPDLKGRVHFTSNDVKSGDASINVTNLQLSDIG 97
Query: 365 NYSCNVQSKVSDTGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPEAPKAGDKVRLEC-VA 423
Y C V+ + F L V L P+ + + G+ +L+C
Sbjct: 98 TYQCKVKKAPGVANKK---FLLTV--------LVKPSGTRCFVDGSEEIGNDFKLKCEPK 146
Query: 424 FGYPVPSYNWTRRGSPL--PRNAYFENFNRILTIPNVKVEDQGEYICRASNDRSALESSV 481
G + W + P E + ++++ N E G Y C N + + +
Sbjct: 147 EGSLPLQFEWQKLSDSQTMPTPWLAEMTSPVISVKNASSEYSGTYSCTVQNRVGSDQCML 206
Query: 482 TISIQAEP 489
+ + P
Sbjct: 207 RLDVV-PP 213
Score = 62.4 bits (151), Expect = 5e-11
Identities = 28/188 (14%), Positives = 51/188 (27%), Gaps = 29/188 (15%)
Query: 211 DITLSCYAGGYPNPSY----EWFKED-----------YVQDRLVANLIDPLSDKRFTLSG 255
L C P EW + + P R +
Sbjct: 17 TAYLPCKFTLSPEDQGPLDIEWLISPSDNQIVDQVIILYSGDKIYDNYYPDLKGRVHFTS 76
Query: 256 -------GNLIINDPRQVEDRGSYHCKASNKFGSIISESVQLAFGFIGEFNLKRAPEIGN 308
++ + + Q+ D G+Y CK G ++ L R G+
Sbjct: 77 NDVKSGDASINVTNL-QLSDIGTYQCKVKKAPGVA-NKKFLLTVLVKPSG--TRCFVDGS 132
Query: 309 QNWGKAMF--CDPPTNYPGVNYYWARDYFPNFVEEDKRVFVSYDGALYFSALEQIDAGNY 366
+ G C+P + + W + + + + +G Y
Sbjct: 133 EEIGNDFKLKCEPKEGSLPLQFEWQKLSDSQTMPTP-WLAEMTSPVISVKNASSEYSGTY 191
Query: 367 SCNVQSKV 374
SC VQ++V
Sbjct: 192 SCTVQNRV 199
Score = 56.6 bits (136), Expect = 5e-09
Identities = 18/102 (17%), Positives = 33/102 (32%), Gaps = 16/102 (15%)
Query: 190 PYFIKQPTDVVFDLSKRSILNDITLSCYA-GGYPNPSYEWFKEDYVQDRLVANLIDPLSD 248
P + D ++ ND L C G +EW K + +
Sbjct: 122 PSGTRCFVDGSEEIG-----NDFKLKCEPKEGSLPLQFEWQKLS--------DSQTMPTP 168
Query: 249 KRFTLSGGNLIINDPRQVEDRGSYHCKASNKFGSIISESVQL 290
++ + + + E G+Y C N+ GS ++L
Sbjct: 169 WLAEMTSPVISVKNASS-EYSGTYSCTVQNRVGS-DQCMLRL 208
Score = 50.1 bits (119), Expect = 7e-07
Identities = 13/84 (15%), Positives = 26/84 (30%), Gaps = 1/84 (1%)
Query: 729 ELETPNINIDGGLLEITNASFADAGEYECVVKSTVGKISTKTTVIVEGPPGLPGGVQVVE 788
+ ++ + +TN +D G Y+C VK G + K + V P
Sbjct: 73 HFTSNDVKSGDASINVTNLQLSDIGTYQCKVKKAPGVANKKFLLTVLVKPSGTRCFVDGS 132
Query: 789 VHKTSATIQWTDGATNGRPITHYK 812
+ + G ++
Sbjct: 133 EEIGN-DFKLKCEPKEGSLPLQFE 155
>1uem_A KIAA1568 protein; immunoglobulin-like beta-sandwich fold,
fibronectin type III, structural genomics; NMR {Homo
sapiens} SCOP: b.1.2.1
Length = 117
Score = 95.5 bits (238), Expect = 1e-23
Identities = 34/120 (28%), Positives = 48/120 (40%), Gaps = 11/120 (9%)
Query: 767 STKTTVIVEGPPGLPGGVQVVEVHKTSATIQWTDGATNGRPITHYKI-IARTNWNSTWFN 825
S+ + PG P QV +V K S T+ W G P + Y I + +++W
Sbjct: 5 SSGKNYDLSDLPGPPSKPQVTDVTKNSVTLSWQPGTPGTLPASAYIIEAFSQSVSNSWQT 64
Query: 826 VSEHVIGKEVDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPSPQYNTPADKP 885
V+ HV + YT + L P + Y F V A N G +PS S T P
Sbjct: 65 VANHV---KTTLYT------VRG-LRPNTIYLFMVRAINPQGLSDPSPMSDPVRTQDSGP 114
Score = 39.3 bits (92), Expect = 8e-04
Identities = 24/123 (19%), Positives = 40/123 (32%), Gaps = 33/123 (26%)
Query: 869 GEPSSPSPQYNTPADKPYQAPSRIGGGGGKIGDLS-----ISWEPLPREKQNAPNIYYKI 923
G S Y +D P PS+ ++ D++ +SW+P P Y I
Sbjct: 1 GSSGSSGKNY-DLSDLP-GPPSKP-----QVTDVTKNSVTLSWQPGTPG--TLPASAYII 51
Query: 924 -FWRKKNDTEFQSETLKEYGNVGIAVVRIPSEFY-------YTEYEVKVQAINDVGPGPE 975
+ + +Q+ + + Y T Y V+AIN G
Sbjct: 52 EAFSQSVSNSWQT-----------VANHVKTTLYTVRGLRPNTIYLFMVRAINPQGLSDP 100
Query: 976 SEV 978
S +
Sbjct: 101 SPM 103
>3ry4_A Low affinity immunoglobulin gamma FC region recep; FC receptor,
CD32, immunoglobulin superfamily, low responder
polymorphism, cell membrane; HET: NAG; 1.50A {Homo
sapiens} PDB: 1fcg_A 3ry5_A 1h9v_A 3d5o_F* 3ry6_C*
2fcb_A
Length = 170
Score = 96.0 bits (239), Expect = 5e-23
Identities = 32/167 (19%), Positives = 52/167 (31%), Gaps = 27/167 (16%)
Query: 506 LTWTCEAFGVPDV-TYSWFRNGELLNSETLPLEDQDRYFIQDNVLTIRYLNPERDPAMYQ 564
+T TC+ P+ + WF NG L+ + T P D Y
Sbjct: 22 VTLTCQGARSPESDSIQWFHNGNLIPTHTQPS----------YRFKAN----NNDSGEYT 67
Query: 565 CRAKNQLKTRYSSAQLRVLTLKPSFKKRPLESETYAGEGGNVTIFCNPEA-APKPKFVWK 623
C+ + L VL + + P EG + + C+ P K +
Sbjct: 68 CQTGQT--SLSDPVHLTVLF-EWLVLQTP---HLEFQEGETIMLRCHSWKDKPLVKVTFF 121
Query: 624 KDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTATNVHGMDESK 670
++G + I + SG Y CT + + SK
Sbjct: 122 QNGKSQKFSH-----LDPTFSIPQANHSHSGDYHCTGNIGYTLFSSK 163
Score = 93.0 bits (231), Expect = 5e-22
Identities = 29/167 (17%), Positives = 52/167 (31%), Gaps = 23/167 (13%)
Query: 414 GDKVRLECVAFGYP-VPSYNWTRRGSPLPRNAYFENFNRILTIPNVKVEDQGEYICRASN 472
D V L C P S W G+ +P + + D GEY C+
Sbjct: 19 EDSVTLTCQGARSPESDSIQWFHNGNLIPTH------TQPSYRFKANNNDSGEYTCQTGQ 72
Query: 473 DRSALESSVTISIQAEPNFTIPLTDKHMDNQADLTWTCEAF-GVPDVTYSWFRNGELLNS 531
++L V +++ E + + + + C ++ P V ++F+NG+
Sbjct: 73 --TSLSDPVHLTVLFEWLVLQTPHLEFQEGE-TIMLRCHSWKDKPLVKVTFFQNGKSQ-- 127
Query: 532 ETLPLEDQDRYFIQDNVLTIRYLNPERDPAMYQCRAKNQLKTRYSSA 578
++ D +I N Y C S
Sbjct: 128 ---------KFSHLDPTFSIPQANHS-HSGDYHCTGNIGYTLFSSKP 164
Score = 88.7 bits (220), Expect = 2e-20
Identities = 38/195 (19%), Positives = 63/195 (32%), Gaps = 33/195 (16%)
Query: 582 VLTLKPSFKKRPLESETYAGEGGNVTIFCNPEAAPKP-KFVWKKDGNIIGSGGRRKIFEN 640
VL L+P + +VT+ C +P+ W +GN+I +
Sbjct: 6 VLKLEPP--------WINVLQEDSVTLTCQGARSPESDSIQWFHNGNLIPT-------HT 50
Query: 641 GNLLISPVSRDDSGIYSCTATNVHGMDESKGRLIVLHGPSYYEQLPPKITIAAHRNLQLR 700
+ +DSG Y+C D L VL + P + + LR
Sbjct: 51 QPSYRFKANNNDSGEYTCQTGQTSLSDPV--HLTVLFEWLVLQ--TPHLEFQEGETIMLR 106
Query: 701 CSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEITNASFADAGEYECVVK 760
C + ++ L V + NG I A+ + +G+Y C
Sbjct: 107 CHSWKDKPL-VKVTFFQNGKSQKFSH-----------LDPTFSIPQANHSHSGDYHCTGN 154
Query: 761 STVGKISTKT-TVIV 774
S+K T+ V
Sbjct: 155 IGYTLFSSKPVTITV 169
Score = 81.4 bits (201), Expect = 5e-18
Identities = 30/173 (17%), Positives = 55/173 (31%), Gaps = 31/173 (17%)
Query: 317 CDPPTNYPGVNYYWARDYFPNFVEEDKRVFVSYDGALYFSALEQIDAGNYSCNVQ-SKVS 375
C + + W + + ++ Y D+G Y+C + +S
Sbjct: 26 CQGARSPESDSIQWFHN---------GNLIPTHTQPSYRFKANNNDSGEYTCQTGQTSLS 76
Query: 376 DTGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPEAPKAGDKVRLECVAF-GYPVPSYNWT 434
D L V Q F E G+ + L C ++ P+ +
Sbjct: 77 DP------VHLTVLFEWLVLQTP-----HLEFQE----GETIMLRCHSWKDKPLVKVTFF 121
Query: 435 RRGSPLPRNAYFENFNRILTIPNVKVEDQGEYICRASNDRSALES-SVTISIQ 486
+ G F + + +IP G+Y C + + S VTI++Q
Sbjct: 122 QNGKSQK----FSHLDPTFSIPQANHSHSGDYHCTGNIGYTLFSSKPVTITVQ 170
Score = 56.4 bits (136), Expect = 3e-09
Identities = 24/163 (14%), Positives = 41/163 (25%), Gaps = 33/163 (20%)
Query: 212 ITLSCYA-GGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVEDRG 270
+TL+C + S +WF D G
Sbjct: 22 VTLTCQGARSPESDSIQWFHNG----------------NLIPTHTQPSYRFKA-NNNDSG 64
Query: 271 SYHCKASNKFGSIISESVQLAFGFIGEFNLKRAPEIGNQNWGKA--MFCDPPTNYPGVNY 328
Y C+ + +S+ V L F E G+ + C + P V
Sbjct: 65 EYTCQTGQ---TSLSDPVHLTVLFEWLVLQTPHLEF---QEGETIMLRCHSWKDKPLVKV 118
Query: 329 YWARDYFPNFVEEDKRVFVSYDGALYFSALEQIDAGNYSCNVQ 371
+ ++ + F D +G+Y C
Sbjct: 119 TFFQN-------GKSQKFSHLDPTFSIPQANHSHSGDYHCTGN 154
Score = 52.5 bits (126), Expect = 7e-08
Identities = 13/82 (15%), Positives = 24/82 (29%), Gaps = 16/82 (19%)
Query: 210 NDITLSCYA-GGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVED 268
I L C++ P +F+ ++F+ I
Sbjct: 101 ETIMLRCHSWKDKPLVKVTFFQNG--------------KSQKFSHLDPTFSIPQA-NHSH 145
Query: 269 RGSYHCKASNKFGSIISESVQL 290
G YHC + + S+ V +
Sbjct: 146 SGDYHCTGNIGYTLFSSKPVTI 167
Score = 42.9 bits (101), Expect = 1e-04
Identities = 19/93 (20%), Positives = 27/93 (29%), Gaps = 16/93 (17%)
Query: 686 PPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEIT 745
PP I + ++ L C + W HNG I
Sbjct: 11 PPWINVLQEDSVTLTCQG-ARSPESDSIQWFHNGNLIPT-------------HTQPSYRF 56
Query: 746 NASFADAGEYECVVKSTVGKISTKTTVIVEGPP 778
A+ D+GEY C T +S + V
Sbjct: 57 KANNNDSGEYTCQTGQTS--LSDPVHLTVLFEW 87
>3r8q_A Fibronectin; heparin, FNIII, heparin binding, cell adhesion; 2.40A
{Homo sapiens} PDB: 1fnh_A
Length = 290
Score = 97.9 bits (244), Expect = 2e-22
Identities = 36/218 (16%), Positives = 69/218 (31%), Gaps = 30/218 (13%)
Query: 764 GKISTKTTVIVEGPPGL-PGGVQVVEVHKTSATIQWTDGATNGRPITHYKIIARTNWNST 822
S+ V+ +GP P ++ +V TS + QWT N +T Y++ +
Sbjct: 6 HHHSSGLEVLFQGPAIPAPTDLKFTQVTPTSLSAQWTPP--NV-QLTGYRVRVTPKEKTG 62
Query: 823 WFNVSEHVIGKEVDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPSPQYNTPA 882
KE++ + L+ + YE V A + P+
Sbjct: 63 PM--------KEINLAPDSSSVVVSG-LMVATKYEVSVYALKDTLTSRPAQGVVTTLENV 113
Query: 883 DKPYQAPSRIGGGGGKIGDLSISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETLKEYG 942
P R ++ISW + +++ N T+K
Sbjct: 114 S----PPRRARVTDATETTITISWRT-----KTETITGFQVDAVPANGQTPIQRTIK--P 162
Query: 943 NVGIAVVR--IPSEFYYTEYEVKVQAINDVGPGPESEV 978
+V + P T+Y++ + +ND +
Sbjct: 163 DVRSYTITGLQP----GTDYKIYLYTLNDNARSSPVVI 196
Score = 84.8 bits (210), Expect = 5e-18
Identities = 44/236 (18%), Positives = 74/236 (31%), Gaps = 46/236 (19%)
Query: 754 EYECVVKST----VGKISTKTTVIVEGPPGLPGGVQVVEVHKTSATIQWTDGATNGRPIT 809
+YE V + + + +E P +V + +T+ TI W IT
Sbjct: 86 KYEVSVYALKDTLTSRPAQGVVTTLENVSP-PRRARVTDATETTITISWR--TKTE-TIT 141
Query: 810 HYKIIARTNWNSTWFNVSEHVIGKEVDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYG 869
+++ A T + I +V YT I L P + Y+ + N+
Sbjct: 142 GFQVDAVPANGQTPI---QRTIKPDVRSYT------ITG-LQPGTDYKIYLYTLNDNARS 191
Query: 870 EPSSPSPQYNTPADKPYQAPSRIGGGGGKIGDLS-----ISWEPLPREKQNAPNIYYKIF 924
P T D APS + + + +SW+P A Y I
Sbjct: 192 SPVVIDAS--TAID----APSNL-----RFLATTPNSLLVSWQPP-----RARITGYIIK 235
Query: 925 WRKKNDTEFQSETLKEYGNVGIAVVR--IPSEFYYTEYEVKVQAINDVGPGPESEV 978
+ K + + V A + P TEY + V A+ +
Sbjct: 236 YEKPGSPP-REVVPRPRPGVTEATITGLEP----GTEYTIYVIALKNNQKSEPLIG 286
>1x3d_A Fibronectin type-III domain containing protein 3A; structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
b.1.2.1
Length = 118
Score = 92.5 bits (230), Expect = 2e-22
Identities = 25/123 (20%), Positives = 42/123 (34%), Gaps = 12/123 (9%)
Query: 764 GKISTKTTVIVEGPPGLPGGVQVVEVHKTSATIQWTDGATNGRPITHYKIIARTNWNSTW 823
G + + P +P ++ K S T+QW + NG I ++ + +
Sbjct: 4 GSSGAEIFTTLSCEPDIPNPPRIANRTKNSLTLQWKAPSDNGSKIQNFVLEWDEGKGNGE 63
Query: 824 FNVSEHVIGKEVDRYTGR-KEASIENVLVPWSTYEFKVIAGNELGYGEPSSPSPQYNTPA 882
F Y G K+ I L P +F++ A N+ G S Y +
Sbjct: 64 F----------CQCYMGSQKQFKITK-LSPAMGCKFRLSARNDYGTSGFSEEVLYYTSGC 112
Query: 883 DKP 885
P
Sbjct: 113 SGP 115
Score = 41.6 bits (98), Expect = 1e-04
Identities = 15/124 (12%), Positives = 33/124 (26%), Gaps = 32/124 (25%)
Query: 867 GYGEPSSPSPQYNTPADKPYQAPSRIGGGGGKIGD-----LSISWEPLPREKQNAPNIYY 921
G S T + +P P+ +I + L++ W+ + +
Sbjct: 1 GSSGSSGAEIFT-TLSCEP-DIPNPP-----RIANRTKNSLTLQWKA--PSDNGSKIQNF 51
Query: 922 KIFWRKKNDTEFQSETLKEYGNVGIAVVRIPSEFY-------YTEYEVKVQAINDVGPGP 974
+ W + + + + + ++ A ND G
Sbjct: 52 VLEWDEGKGNGEFCQ-----------CYMGSQKQFKITKLSPAMGCKFRLSARNDYGTSG 100
Query: 975 ESEV 978
SE
Sbjct: 101 FSEE 104
>2edj_A Roundabout homolog 2; KIAA1568 protein, beta sandwich, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 100
Score = 91.7 bits (228), Expect = 2e-22
Identities = 25/92 (27%), Positives = 33/92 (35%), Gaps = 3/92 (3%)
Query: 586 KPSFKKRPLESETYAGEGGNVTIFCNPEAAPKPKFVWKKDGN-IIGSGGRRKIFENGNLL 644
P + P + G + C P P W K+G G R I E G L
Sbjct: 8 PPIILQGP--ANQTLAVDGTALLKCKATGDPLPVISWLKEGFTFPGRDPRATIQEQGTLQ 65
Query: 645 ISPVSRDDSGIYSCTATNVHGMDESKGRLIVL 676
I + D+G Y+C AT+ G L V
Sbjct: 66 IKNLRISDTGTYTCVATSSSGETSWSAVLDVT 97
Score = 71.3 bits (175), Expect = 3e-15
Identities = 20/91 (21%), Positives = 32/91 (35%), Gaps = 7/91 (7%)
Query: 404 PKTFPEAPK-----AGDKVRLECVAFGYPVPSYNWTRRGSPLPRNA--YFENFNRILTIP 456
P + P L+C A G P+P +W + G P L I
Sbjct: 8 PPIILQGPANQTLAVDGTALLKCKATGDPLPVISWLKEGFTFPGRDPRATIQEQGTLQIK 67
Query: 457 NVKVEDQGEYICRASNDRSALESSVTISIQA 487
N+++ D G Y C A++ S + +
Sbjct: 68 NLRISDTGTYTCVATSSSGETSWSAVLDVTE 98
Score = 67.0 bits (164), Expect = 9e-14
Identities = 22/96 (22%), Positives = 30/96 (31%), Gaps = 8/96 (8%)
Query: 489 PNFTIPLTDKHMDNQADLTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQDN- 547
P ++ + C+A G P SW + G R IQ+
Sbjct: 9 PIILQGPANQTLAVDGTALLKCKATGDPLPVISWLKEGFTFPGRD------PRATIQEQG 62
Query: 548 VLTIRYLNPERDPAMYQCRAKNQLKTRYSSAQLRVL 583
L I+ L D Y C A + SA L V
Sbjct: 63 TLQIKNLRIS-DTGTYTCVATSSSGETSWSAVLDVT 97
Score = 65.1 bits (159), Expect = 5e-13
Identities = 23/101 (22%), Positives = 34/101 (33%), Gaps = 15/101 (14%)
Query: 190 PYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDK 249
P ++ P + + L C A G P P W KE +
Sbjct: 9 PIILQGPANQTLAVDG-----TALLKCKATGDPLPVISWLKEG--------FTFPGRDPR 55
Query: 250 RFTLSGGNLIINDPRQVEDRGSYHCKASNKFGSIISESVQL 290
G L I + ++ D G+Y C A++ G S S L
Sbjct: 56 ATIQEQGTLQIKNL-RISDTGTYTCVATSSSGE-TSWSAVL 94
Score = 50.9 bits (122), Expect = 5e-08
Identities = 27/101 (26%), Positives = 38/101 (37%), Gaps = 9/101 (8%)
Query: 677 HGPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNIN 736
GP Q P T+A L+C A + L ++ W G P
Sbjct: 6 SGPPIILQGPANQTLAVDGTALLKCKATGDPLPVIS--WLKEGFTF------PGRDPRAT 57
Query: 737 I-DGGLLEITNASFADAGEYECVVKSTVGKISTKTTVIVEG 776
I + G L+I N +D G Y CV S+ G+ S + V
Sbjct: 58 IQEQGTLQIKNLRISDTGTYTCVATSSSGETSWSAVLDVTE 98
Score = 33.5 bits (77), Expect = 0.056
Identities = 13/45 (28%), Positives = 17/45 (37%), Gaps = 1/45 (2%)
Query: 330 WARDYFPNFVEEDKRVFVSYDGALYFSALEQIDAGNYSCNVQSKV 374
W ++ F F D R + G L L D G Y+C S
Sbjct: 42 WLKEGFT-FPGRDPRATIQEQGTLQIKNLRISDTGTYTCVATSSS 85
>3irg_B Obscurin-like protein 1; IG-like, titin, OBSL1, complex,
alternative splicing, ATP-binding, calcium,
calmodulin-binding, cardiomyopathy; 1.30A {Homo sapiens}
PDB: 3knb_B 2wp3_O* 2wwm_C 2wwk_O
Length = 107
Score = 91.7 bits (228), Expect = 3e-22
Identities = 25/97 (25%), Positives = 37/97 (38%), Gaps = 5/97 (5%)
Query: 586 KPSFKKRPLESETYAGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGN--- 642
P F + P G + C P P VW+K G + + R +G
Sbjct: 13 PPCFLRFP--RPVRVVSGAEAELKCVVLGEPPPVVVWEKGGQQLAASERLSFPADGAEHG 70
Query: 643 LLISPVSRDDSGIYSCTATNVHGMDESKGRLIVLHGP 679
LL++ D+G+Y C A N G + + VL P
Sbjct: 71 LLLTAALPTDAGVYVCRARNAAGEAYAAAAVTVLEPP 107
Score = 73.2 bits (180), Expect = 8e-16
Identities = 19/82 (23%), Positives = 32/82 (39%), Gaps = 4/82 (4%)
Query: 412 KAGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYF----ENFNRILTIPNVKVEDQGEYI 467
+G + L+CV G P P W + G L + + L + D G Y+
Sbjct: 26 VSGAEAELKCVVLGEPPPVVVWEKGGQQLAASERLSFPADGAEHGLLLTAALPTDAGVYV 85
Query: 468 CRASNDRSALESSVTISIQAEP 489
CRA N ++ +++ P
Sbjct: 86 CRARNAAGEAYAAAAVTVLEPP 107
Score = 60.5 bits (147), Expect = 2e-11
Identities = 22/99 (22%), Positives = 35/99 (35%), Gaps = 12/99 (12%)
Query: 489 PNFTIPLTDKHMDNQADLTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQDN- 547
P F + + A+ C G P W + G+ L +R +
Sbjct: 14 PCFLRFPRPVRVVSGAEAELKCVVLGEPPPVVVWEKGGQ-------QLAASERLSFPADG 66
Query: 548 ---VLTIRYLNPERDPAMYQCRAKNQLKTRYSSAQLRVL 583
L + P D +Y CRA+N Y++A + VL
Sbjct: 67 AEHGLLLTAALPT-DAGVYVCRARNAAGEAYAAAAVTVL 104
Score = 56.6 bits (137), Expect = 6e-10
Identities = 21/96 (21%), Positives = 28/96 (29%), Gaps = 16/96 (16%)
Query: 190 PYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDK 249
P F++ P V + L C G P P W K +
Sbjct: 14 PCFLRFPRPVRVVSGA-----EAELKCVVLGEPPPVVVWEKGG--------QQLAASERL 60
Query: 250 RFTLSGGN--LIINDPRQVEDRGSYHCKASNKFGSI 283
F G L++ D G Y C+A N G
Sbjct: 61 SFPADGAEHGLLLTAALP-TDAGVYVCRARNAAGEA 95
Score = 55.1 bits (133), Expect = 2e-09
Identities = 22/99 (22%), Positives = 38/99 (38%), Gaps = 13/99 (13%)
Query: 684 QLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINI--DGGL 741
+ P + + + +L+C E V +W G ++ + ++ DG
Sbjct: 18 RFPRPVRVVSGAEAELKCVVLGEPPPVV--VWEKGGQQLA-------ASERLSFPADGAE 68
Query: 742 --LEITNASFADAGEYECVVKSTVGKISTKTTVIVEGPP 778
L +T A DAG Y C ++ G+ V V PP
Sbjct: 69 HGLLLTAALPTDAGVYVCRARNAAGEAYAAAAVTVLEPP 107
>3f7q_A Integrin beta-4, GP150; hemidesmosome, cell adhesion, carcinoma,
epidermolysis bullosa, alternative splicing, disease
mutation, glycoprotein; HET: 1PE PG4; 1.75A {Homo
sapiens} PDB: 3f7r_A 3f7p_C 1qg3_A
Length = 234
Score = 95.6 bits (238), Expect = 3e-22
Identities = 43/214 (20%), Positives = 63/214 (29%), Gaps = 41/214 (19%)
Query: 777 PPGLPGGVQVVEVHKTSATIQWTDGATNGRPITHYKIIARTNWNSTWFNVSEHVIGKEVD 836
G P W +G+ Y++ +S +
Sbjct: 5 DLGAPQNPNAKAAGSRKIHFNWL--PPSGK-PMGYRVKYWIQGDSES---------EAHL 52
Query: 837 RYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPSPQYNTPADKPYQAPSRIGGGG 896
+ + N L P+ YE KV A G G SS T + P P R+
Sbjct: 53 LDSKVPSVELTN-LYPYCDYEMKVCAYGAQGEGPYSSLVSCR-THQEVP-SEPGRL---- 105
Query: 897 GKIGDLS-----ISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETLKEYGNVGIAVVRI 951
+S +SW P E N Y++ + ND + G + +V
Sbjct: 106 -AFNVVSSTVTQLSWAE-PAE-TNGEITAYEVCYGLVNDDN------RPIGPMKKVLVDN 156
Query: 952 PSEFYY--------TEYEVKVQAINDVGPGPESE 977
P Y V+A N G GPE E
Sbjct: 157 PKNRMLLIENLRESQPYRYTVKARNGAGWGPERE 190
Score = 67.1 bits (164), Expect = 2e-12
Identities = 25/140 (17%), Positives = 41/140 (29%), Gaps = 6/140 (4%)
Query: 775 EGPPGLPGGVQVVEVHKTSATIQWTDGATNGRPITHYKIIARTNWNSTWFNVSEHVIGKE 834
+ P PG + V T + W + A IT Y++ + + +
Sbjct: 96 QEVPSEPGRLAFNVVSSTVTQLSWAEPAETNGEITAYEVCYGLVNDDNRPIGPMKKVLVD 155
Query: 835 VDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPSPQYNTPADKPYQAPSRIGG 894
+ IEN L Y + V A N G+G T +P P
Sbjct: 156 NPKNR---MLLIEN-LRESQPYRYTVKARNGAGWGPEREAIINLATQPKRPMSIPIIPDI 211
Query: 895 GGGKI--GDLSISWEPLPRE 912
G+ S+ +
Sbjct: 212 PIVDAQSGEDYDSFLMYSDD 231
Score = 57.9 bits (140), Expect = 2e-09
Identities = 20/98 (20%), Positives = 35/98 (35%), Gaps = 13/98 (13%)
Query: 883 DKPYQAPSRIGGGGGKIGDLSISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETLKEYG 942
AP + +W P + + Y++ + + D+E ++ L
Sbjct: 3 HMDLGAPQNPNAKAAGSRKIHFNWLP-----PSGKPMGYRVKYWIQGDSESEAHLLD--S 55
Query: 943 NVGIAVVR--IPSEFYYTEYEVKVQAINDVGPGPESEV 978
V + P Y +YE+KV A G GP S +
Sbjct: 56 KVPSVELTNLYP----YCDYEMKVCAYGAQGEGPYSSL 89
>2ch8_A BARF1, P33, 33 kDa early protein; viral protein, immunoglobulin
domain, oncogene; HET: NAG MAN; 2.3A {Epstein-barr
virus}
Length = 201
Score = 94.7 bits (235), Expect = 4e-22
Identities = 21/157 (13%), Positives = 43/157 (27%), Gaps = 16/157 (10%)
Query: 417 VRLECVAFGYPVPSYNWTRRGSPLPRNAYFENFNRILTIPNVKVEDQGEYICRASNDRSA 476
+ + + +P + R + L + + G Y+CR +
Sbjct: 43 MHHDVIFIEWPFRGFFDIHRSAN----------TFFLVVTAANISHDGNYLCRMKLGETE 92
Query: 477 LESSVTISIQAEPNFTIPLTDKHMDNQADLTWTCEAFGVPDVTYSWFRNGELLNSETLPL 536
+ +S+ ++ + + LT TC P W E P
Sbjct: 93 VTKQEHLSVVKPLTLSVHSERSQFPDFSVLTVTCTVNAFPHPHVQWLMPE---GVEPAPT 149
Query: 537 EDQDRYFIQDN-VLTIRYLN--PERDPAMYQCRAKNQ 570
+ + L++ P+ C KN
Sbjct: 150 AANGGVMKEKDGSLSVAVDLSLPKPWHLPVTCVGKND 186
Score = 88.5 bits (219), Expect = 4e-20
Identities = 29/185 (15%), Positives = 54/185 (29%), Gaps = 28/185 (15%)
Query: 509 TCEAFGV---PDVTYSWFRNGEL--------LNSETLPLEDQDRYFIQ------DNVLTI 551
T V P++ SWF+ G ++ + + +E R F L +
Sbjct: 12 TSYWRRVSLGPEIEVSWFKLGPGEEQVLIGRMHHDVIFIEWPFRGFFDIHRSANTFFLVV 71
Query: 552 RYLNPERDPAMYQCRAKNQLKTRYSSAQLRVLTLKPSFKKRPLESETYAGEGGNVTIFCN 611
N Y CR K L V+ + + + +T+ C
Sbjct: 72 TAANIS-HDGNYLCRMKLGETEVTKQEHLSVVK-PLTLSVHS--ERSQFPDFSVLTVTCT 127
Query: 612 PEAAPKPKFVWKKDGNIIGS----GGRRKIFENGNLLIS---PVSRDDSGIYSCTATNVH 664
A P P W + + G ++G+L ++ + + +C N
Sbjct: 128 VNAFPHPHVQWLMPEGVEPAPTAANGGVMKEKDGSLSVAVDLSLPKPWHLPVTCVGKNDK 187
Query: 665 GMDES 669
Sbjct: 188 EEAHG 192
Score = 70.8 bits (173), Expect = 5e-14
Identities = 31/194 (15%), Positives = 49/194 (25%), Gaps = 33/194 (17%)
Query: 600 AGEGGNVTIFCNPE---AAPKPKFVWKKDGN-----IIGS------------GGRRKIFE 639
A G VT+ P+ + W K G +IG G I
Sbjct: 3 AFLGERVTLTSYWRRVSLGPEIEVSWFKLGPGEEQVLIGRMHHDVIFIEWPFRGFFDIHR 62
Query: 640 NGN---LLISPVSRDDSGIYSCTATNVHGMDESKGRLIVLHGPSYYEQLPPKITIAAHRN 696
+ N L+++ + G Y C + L V P +
Sbjct: 63 SANTFFLVVTAANISHDGNYLCRMKLGETEVTKQEHLSV-VKPLTLSVHSERSQFPDFSV 121
Query: 697 LQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINI--DGGL--LEITNASFADA 752
L + C+ + V W G + DG L +
Sbjct: 122 LTVTCTVNAFPHPHV--QWLMPE---GVEPAPTAANGGVMKEKDGSLSVAVDLSLPKPWH 176
Query: 753 GEYECVVKSTVGKI 766
CV K+ +
Sbjct: 177 LPVTCVGKNDKEEA 190
Score = 68.1 bits (166), Expect = 5e-13
Identities = 19/140 (13%), Positives = 30/140 (21%), Gaps = 31/140 (22%)
Query: 348 SYDGALYFSALEQIDAGNYSCNVQSKVSDTGRNGPFFPLKVFPHSNFQQLKFPNNFPKTF 407
+ L +A GNY C ++ L V P T
Sbjct: 64 ANTFFLVVTAANISHDGNYLCRMKL---GETEVTKQEHLSVVK-------------PLTL 107
Query: 408 PEAPK-----AGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYFENFN---------RIL 453
+ + + C +P P W P N +
Sbjct: 108 SVHSERSQFPDFSVLTVTCTVNAFPHPHVQWLMPEGVEPAP-TAANGGVMKEKDGSLSVA 166
Query: 454 TIPNVKVEDQGEYICRASND 473
++ C ND
Sbjct: 167 VDLSLPKPWHLPVTCVGKND 186
Score = 57.0 bits (137), Expect = 3e-09
Identities = 11/97 (11%), Positives = 24/97 (24%), Gaps = 14/97 (14%)
Query: 190 PYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDK 249
F + +T++C +P+P +W + V ++
Sbjct: 105 LTLSVHSERSQFPDF-----SVLTVTCTVNAFPHPHVQWLMPEGV------EPAPTAANG 153
Query: 250 RFTLSG-GNLIINDPRQV--EDRGSYHCKASNKFGSI 283
G+L + + C N
Sbjct: 154 GVMKEKDGSLSVAVDLSLPKPWHLPVTCVGKNDKEEA 190
Score = 49.6 bits (118), Expect = 1e-06
Identities = 27/183 (14%), Positives = 54/183 (29%), Gaps = 32/183 (17%)
Query: 210 NDITLSCYA---GGYPNPSYEWFKEDYVQDRLVANLI--------DPLS---DKRFTLSG 255
+TL+ Y P WFK +++++ + P D + +
Sbjct: 7 ERVTLTSYWRRVSLGPEIEVSWFKLGPGEEQVLIGRMHHDVIFIEWPFRGFFDIHRSANT 66
Query: 256 GNLIINDPRQVEDRGSYHCKASNKFGSIISE---SVQLAFGFIGEFNLKRAPEIGNQNWG 312
L++ + G+Y C+ + + SV + P+ +
Sbjct: 67 FFLVVTAA-NISHDGNYLCRMKLGETEVTKQEHLSVVKPLTLSVHSERSQFPD-FSV--- 121
Query: 313 KAMFC----DPPTNYPGVNYYWARDYFPNFVEEDKRVFVSYDGALY---FSALEQIDAGN 365
+ C P P V + P + V DG+L +L +
Sbjct: 122 LTVTCTVNAFPH---PHVQWLMPEGVEPAPTAANGGVMKEKDGSLSVAVDLSLPKPWHLP 178
Query: 366 YSC 368
+C
Sbjct: 179 VTC 181
Score = 45.8 bits (108), Expect = 2e-05
Identities = 19/105 (18%), Positives = 34/105 (32%), Gaps = 15/105 (14%)
Query: 689 ITIAAHRNLQLRCSAHTEELLDVAYI-WTHNG-----VRIGNMDLNELETPN-------I 735
+T + L L + W G V IG M + + I
Sbjct: 1 VTAFLGERVTLTSYWRRVSLGPEIEVSWFKLGPGEEQVLIGRMHHDVIFIEWPFRGFFDI 60
Query: 736 NIDG--GLLEITNASFADAGEYECVVKSTVGKISTKTTVIVEGPP 778
+ L +T A+ + G Y C +K +++ + + V P
Sbjct: 61 HRSANTFFLVVTAANISHDGNYLCRMKLGETEVTKQEHLSVVKPL 105
>2kkq_A Myotilin; unknown function, actin-binding, cell membrane,
cytoplasm, cytoskeleton, disease mutation,
immunoglobulin domain; NMR {Homo sapiens}
Length = 116
Score = 91.7 bits (228), Expect = 4e-22
Identities = 29/111 (26%), Positives = 48/111 (43%), Gaps = 15/111 (13%)
Query: 586 KPSFKKRPLESETYAGEGGNVTIFCNPEAAPKPKFVWKKDGNII-GSGGRRKIFENGN-- 642
P F +P EG +V + C A P PK WK++ ++ + R ++++
Sbjct: 15 APMFIYKP--QSKKVLEGDSVKLECQISAIPPPKLFWKRNNEMVQFNTDRISLYQDNTGR 72
Query: 643 --LLISPVSRDDSGIYSCTATNVHGMDESKGRLIVLHGPSYYEQLPPKITI 691
LLI V++ D+G Y+ +A N G+ RL V P T+
Sbjct: 73 VTLLIKDVNKKDAGWYTVSAVNEAGVTTCNTRLDV--------TARPNQTL 115
Score = 75.9 bits (187), Expect = 1e-16
Identities = 29/107 (27%), Positives = 40/107 (37%), Gaps = 17/107 (15%)
Query: 405 KTFPEAPK-----------AGDKVRLECVAFGYPVPSYNWTRRGSPLPRNA-----YFEN 448
AP GD V+LEC P P W R + N Y +N
Sbjct: 10 HEHKRAPMFIYKPQSKKVLEGDSVKLECQISAIPPPKLFWKRNNEMVQFNTDRISLYQDN 69
Query: 449 FNRI-LTIPNVKVEDQGEYICRASNDRSALESSVTISIQAEPNFTIP 494
R+ L I +V +D G Y A N+ + + + A PN T+P
Sbjct: 70 TGRVTLLIKDVNKKDAGWYTVSAVNEAGVTTCNTRLDVTARPNQTLP 116
Score = 64.3 bits (157), Expect = 1e-12
Identities = 21/117 (17%), Positives = 40/117 (34%), Gaps = 13/117 (11%)
Query: 478 ESSVTISIQAEPNFTIPLTDKHMDNQADLTWTCEAFGVPDVTYSWFRNGELLNSETLPLE 537
+ + P F K + + C+ +P W RN E++
Sbjct: 5 HHHHSHEHKRAPMFIYKPQSKKVLEGDSVKLECQISAIPPPKLFWKRNNEMVQ------F 58
Query: 538 DQDRYFIQDN-----VLTIRYLNPERDPAMYQCRAKNQLKTRYSSAQLRVLTLKPSF 589
+ DR + + L I+ +N + D Y A N+ + +L V +P+
Sbjct: 59 NTDRISLYQDNTGRVTLLIKDVNKK-DAGWYTVSAVNEAGVTTCNTRLDVTA-RPNQ 113
Score = 60.1 bits (146), Expect = 4e-11
Identities = 19/101 (18%), Positives = 30/101 (29%), Gaps = 18/101 (17%)
Query: 190 PYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDK 249
P FI +P + L C P P W + + ++ +D+
Sbjct: 16 PMFIYKPQSKKVLEGD-----SVKLECQISAIPPPKLFWKRNN--------EMVQFNTDR 62
Query: 250 RFTLSGGN----LIINDPRQVEDRGSYHCKASNKFGSIISE 286
L+I D +D G Y A N+ G
Sbjct: 63 ISLYQDNTGRVTLLIKDV-NKKDAGWYTVSAVNEAGVTTCN 102
Score = 55.5 bits (134), Expect = 2e-09
Identities = 13/65 (20%), Positives = 22/65 (33%), Gaps = 1/65 (1%)
Query: 714 IWTHNGVRIGNMDLNELETPNINIDGGLLEITNASFADAGEYECVVKSTVGKISTKTTVI 773
W N + + + + N L I + + DAG Y + G + T +
Sbjct: 48 FWKRNNEMV-QFNTDRISLYQDNTGRVTLLIKDVNKKDAGWYTVSAVNEAGVTTCNTRLD 106
Query: 774 VEGPP 778
V P
Sbjct: 107 VTARP 111
>1fhg_A Telokin; immunoglobulin fold, beta barrel, contractIle protein;
2.00A {Meleagris gallopavo} SCOP: b.1.1.4 PDB: 1tlk_A
Length = 154
Score = 93.0 bits (231), Expect = 4e-22
Identities = 30/134 (22%), Positives = 46/134 (34%), Gaps = 8/134 (5%)
Query: 561 AMYQCRAKNQLKTRYSSAQLRVLTLKPSFKKRPLESETYAGEGGNVTIFCNPEAAPKPKF 620
+ + +N+ A+ + KP F K + EG C E P P+
Sbjct: 17 PINANKVENEDAFLEEVAEEKPHV-KPYFTKTI--LDMEVVEGSAARFDCKVEGYPDPEV 73
Query: 621 VWKKDGNIIGSGGRRKIFENGN----LLISPVSRDDSGIYSCTATNVHGMDESKGRLIVL 676
+W KD N + +I + L IS V DD Y+C A N G L+V
Sbjct: 74 MWFKDDNPVKESRHFQIDYDEEGNCSLTISEVCGDDDAKYTCKAVNSLGEATCTAELLV- 132
Query: 677 HGPSYYEQLPPKIT 690
+ +
Sbjct: 133 ETMGKEGEGEGEGE 146
Score = 78.7 bits (194), Expect = 4e-17
Identities = 32/152 (21%), Positives = 56/152 (36%), Gaps = 18/152 (11%)
Query: 455 IPNVKVEDQGEYIC----RASNDRSALESSVTISIQAEPNFTIPLTDKHMDNQADLTWTC 510
+ K + N+ + LE +P FT + D + + + C
Sbjct: 4 MSGRKASGSSPTSPINANKVENEDAFLEEVAEEKPHVKPYFTKTILDMEVVEGSAARFDC 63
Query: 511 EAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQDN-----VLTIRYLNPERDPAMYQC 565
+ G PD WF++ P+++ + I + LTI + + D A Y C
Sbjct: 64 KVEGYPDPEVMWFKDDN-------PVKESRHFQIDYDEEGNCSLTISEVCGD-DDAKYTC 115
Query: 566 RAKNQLKTRYSSAQLRVLTLKPSFKKRPLESE 597
+A N L +A+L V T+ + E E
Sbjct: 116 KAVNSLGEATCTAELLVETM-GKEGEGEGEGE 146
Score = 67.6 bits (165), Expect = 3e-13
Identities = 21/82 (25%), Positives = 34/82 (41%), Gaps = 5/82 (6%)
Query: 413 AGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYF-----ENFNRILTIPNVKVEDQGEYI 467
G R +C GYP P W + +P+ + +F E N LTI V +D +Y
Sbjct: 55 EGSAARFDCKVEGYPDPEVMWFKDDNPVKESRHFQIDYDEEGNCSLTISEVCGDDDAKYT 114
Query: 468 CRASNDRSALESSVTISIQAEP 489
C+A N + + ++
Sbjct: 115 CKAVNSLGEATCTAELLVETMG 136
Score = 61.0 bits (148), Expect = 4e-11
Identities = 21/143 (14%), Positives = 49/143 (34%), Gaps = 16/143 (11%)
Query: 645 ISPVS-RDDSGIYSCTATNVHGMDESKGRLIVLHGPSYYEQLPPK-------ITIAAHRN 696
IS +S R SG + N + ++ L + + P + +
Sbjct: 1 ISGMSGRKASGSSPTSPINANKVENEDAFLEEVAEEK--PHVKPYFTKTILDMEVVEGSA 58
Query: 697 LQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGL-LEITNASFADAGEY 755
+ C +V +W + + +++ + +G L I+ D +Y
Sbjct: 59 ARFDCKVEGYPDPEV--MWFKDDNPVKESRHFQIDY---DEEGNCSLTISEVCGDDDAKY 113
Query: 756 ECVVKSTVGKISTKTTVIVEGPP 778
C +++G+ + ++VE
Sbjct: 114 TCKAVNSLGEATCTAELLVETMG 136
Score = 58.3 bits (141), Expect = 5e-10
Identities = 24/100 (24%), Positives = 32/100 (32%), Gaps = 17/100 (17%)
Query: 190 PYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDK 249
PYF K D+ C GYP+P WFK+D N +
Sbjct: 42 PYFTKTILDMEVVEGS-----AARFDCKVEGYPDPEVMWFKDD--------NPVKESRHF 88
Query: 250 RFTLSGGN---LIINDPRQVEDRGSYHCKASNKFGSIISE 286
+ L I++ +D Y CKA N G
Sbjct: 89 QIDYDEEGNCSLTISEVC-GDDDAKYTCKAVNSLGEATCT 127
>2eo9_A Roundabout homolog 1; beta-sandwich, IG-fold, H-ROBO-1, deleted in
U twenty twenty, neurogenesis, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 118
Score = 91.4 bits (227), Expect = 5e-22
Identities = 24/95 (25%), Positives = 36/95 (37%), Gaps = 3/95 (3%)
Query: 587 PSFKKRPLESETYAGEGGNVTIFCNPEAAPKPKFVWKKDGNII-GSGGRRKIFENGNLLI 645
P ++ P G + C +P P +W+KDG ++ R K ENG L I
Sbjct: 9 PVIRQGP--VNQTVAVDGTFVLSCVATGSPVPTILWRKDGVLVSTQDSRIKQLENGVLQI 66
Query: 646 SPVSRDDSGIYSCTATNVHGMDESKGRLIVLHGPS 680
D+G Y+C A+ G + V
Sbjct: 67 RYAKLGDTGRYTCIASTPSGEATWSAYIEVQEFGV 101
Score = 75.6 bits (186), Expect = 1e-16
Identities = 26/98 (26%), Positives = 37/98 (37%), Gaps = 7/98 (7%)
Query: 404 PKTFPEAPK-----AGDKVRLECVAFGYPVPSYNWTRRGSPL-PRNAYFENF-NRILTIP 456
P + P L CVA G PVP+ W + G + +++ + N +L I
Sbjct: 8 PPVIRQGPVNQTVAVDGTFVLSCVATGSPVPTILWRKDGVLVSTQDSRIKQLENGVLQIR 67
Query: 457 NVKVEDQGEYICRASNDRSALESSVTISIQAEPNFTIP 494
K+ D G Y C AS S I +Q P
Sbjct: 68 YAKLGDTGRYTCIASTPSGEATWSAYIEVQEFGVPVQP 105
Score = 67.5 bits (165), Expect = 1e-13
Identities = 24/101 (23%), Positives = 35/101 (34%), Gaps = 15/101 (14%)
Query: 190 PYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDK 249
P + P + + LSC A G P P+ W K+ L+ +
Sbjct: 9 PVIRQGPVNQTVAVDG-----TFVLSCVATGSPVPTILWRKDG--------VLVSTQDSR 55
Query: 250 RFTLSGGNLIINDPRQVEDRGSYHCKASNKFGSIISESVQL 290
L G L I ++ D G Y C AS G + S +
Sbjct: 56 IKQLENGVLQIRY-AKLGDTGRYTCIASTPSGE-ATWSAYI 94
Score = 66.3 bits (162), Expect = 3e-13
Identities = 26/115 (22%), Positives = 38/115 (33%), Gaps = 9/115 (7%)
Query: 489 PNFTIPLTDKHMDNQADLTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQDN- 547
P ++ + +C A G P T W ++G L+++ R +N
Sbjct: 9 PVIRQGPVNQTVAVDGTFVLSCVATGSPVPTILWRKDGVLVST------QDSRIKQLENG 62
Query: 548 VLTIRYLNPERDPAMYQCRAKNQLKTRYSSAQLRVL-TLKPSFKKRPLESETYAG 601
VL IRY D Y C A SA + V P RP +
Sbjct: 63 VLQIRYAKLG-DTGRYTCIASTPSGEATWSAYIEVQEFGVPVQPPRPTDPNLIPS 116
Score = 55.5 bits (134), Expect = 2e-09
Identities = 21/97 (21%), Positives = 37/97 (38%), Gaps = 9/97 (9%)
Query: 683 EQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINI-DGGL 741
Q P T+A L C A + + +W +GV + + I + G+
Sbjct: 12 RQGPVNQTVAVDGTFVLSCVATGSPVPTI--LWRKDGVLV------STQDSRIKQLENGV 63
Query: 742 LEITNASFADAGEYECVVKSTVGKISTKTTVIVEGPP 778
L+I A D G Y C+ + G+ + + V+
Sbjct: 64 LQIRYAKLGDTGRYTCIASTPSGEATWSAYIEVQEFG 100
Score = 33.6 bits (77), Expect = 0.080
Identities = 17/85 (20%), Positives = 29/85 (34%), Gaps = 11/85 (12%)
Query: 330 WARDYFPNFVEEDKRVFVSYDGALYFSALEQIDAGNYSC---NVQSKVSDTGRNGPFFPL 386
W +D +D R+ +G L + D G Y+C + + + +
Sbjct: 42 WRKDGVL-VSTQDSRIKQLENGVLQIRYAKLGDTGRYTCIASTPSGEATWSAY------I 94
Query: 387 KVFPHSNFQQLKFPNNFPKTFPEAP 411
+V Q P + P P AP
Sbjct: 95 EVQEFGVPVQPPRPTD-PNLIPSAP 118
>3puc_A Titin; I-SET IG-like domain, M-BAND, transferase; 0.96A {Homo
sapiens}
Length = 99
Score = 90.4 bits (225), Expect = 6e-22
Identities = 26/93 (27%), Positives = 36/93 (38%), Gaps = 5/93 (5%)
Query: 586 KPSFKKRPLESETYAGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGN--- 642
KP +T P+P +W KDG I GG+ K+ E+
Sbjct: 6 KPVIVTGL--QDTTVSSDSVAKFAVKATGEPRPTAIWTKDGKAITQGGKYKLSEDKGGFF 63
Query: 643 LLISPVSRDDSGIYSCTATNVHGMDESKGRLIV 675
L I DSG+Y+CT N G S +L +
Sbjct: 64 LEIHKTDTSDSGLYTCTVKNSAGSVSSSCKLTI 96
Score = 70.8 bits (174), Expect = 4e-15
Identities = 21/102 (20%), Positives = 41/102 (40%), Gaps = 12/102 (11%)
Query: 485 IQAEPNFTIPLTDKHMDNQADLTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFI 544
I ++P L D + + + + +A G P T W ++G+ + +Y +
Sbjct: 3 ISSKPVIVTGLQDTTVSSDSVAKFAVKATGEPRPTAIWTKDGK-------AITQGGKYKL 55
Query: 545 QDN----VLTIRYLNPERDPAMYQCRAKNQLKTRYSSAQLRV 582
++ L I + D +Y C KN + SS +L +
Sbjct: 56 SEDKGGFFLEIHKTDTS-DSGLYTCTVKNSAGSVSSSCKLTI 96
Score = 70.4 bits (173), Expect = 5e-15
Identities = 18/80 (22%), Positives = 31/80 (38%), Gaps = 4/80 (5%)
Query: 412 KAGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYF----ENFNRILTIPNVKVEDQGEYI 467
+ + A G P P+ WT+ G + + + + L I D G Y
Sbjct: 19 SSDSVAKFAVKATGEPRPTAIWTKDGKAITQGGKYKLSEDKGGFFLEIHKTDTSDSGLYT 78
Query: 468 CRASNDRSALESSVTISIQA 487
C N ++ SS ++I+A
Sbjct: 79 CTVKNSAGSVSSSCKLTIKA 98
Score = 59.6 bits (145), Expect = 4e-11
Identities = 20/99 (20%), Positives = 28/99 (28%), Gaps = 16/99 (16%)
Query: 190 PYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDK 249
P + D + A G P P+ W K+ I
Sbjct: 7 PVIVTGLQDTTVSSDS-----VAKFAVKATGEPRPTAIWTKDG--------KAITQGGKY 53
Query: 250 RFTLSGGN--LIINDPRQVEDRGSYHCKASNKFGSIISE 286
+ + G L I+ D G Y C N GS+ S
Sbjct: 54 KLSEDKGGFFLEIHKT-DTSDSGLYTCTVKNSAGSVSSS 91
Score = 51.1 bits (123), Expect = 3e-08
Identities = 18/67 (26%), Positives = 30/67 (44%), Gaps = 11/67 (16%)
Query: 714 IWTHNGVRIGNMDLNELETPNINI--DGGL--LEITNASFADAGEYECVVKSTVGKISTK 769
IWT +G I + + D G LEI +D+G Y C VK++ G +S+
Sbjct: 39 IWTKDGKAIT-------QGGKYKLSEDKGGFFLEIHKTDTSDSGLYTCTVKNSAGSVSSS 91
Query: 770 TTVIVEG 776
+ ++
Sbjct: 92 CKLTIKA 98
>2yr3_A Myosin light chain kinase, smooth muscle; IG domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 99
Score = 89.7 bits (223), Expect = 1e-21
Identities = 23/100 (23%), Positives = 33/100 (33%), Gaps = 3/100 (3%)
Query: 576 SSAQLRVLTLKPSFKKRPLESETYAGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRR 635
SS + PSF + EG + + C+ P P+ W +G I
Sbjct: 2 SSGSSGMEV-APSFSSVL--KDCAVIEGQDFVLQCSVRGTPVPRITWLLNGQPIQYARST 58
Query: 636 KIFENGNLLISPVSRDDSGIYSCTATNVHGMDESKGRLIV 675
L I +D G Y+C A N G + V
Sbjct: 59 CEAGVAELHIQDALPEDHGTYTCLAENALGQVSCSAWVTV 98
Score = 77.0 bits (190), Expect = 3e-17
Identities = 28/106 (26%), Positives = 41/106 (38%), Gaps = 11/106 (10%)
Query: 479 SSVTISIQAEPNFTIPLTDKHMDNQADLTWTCEAFGVPDVTYSWFRNGELLNSETLPLED 538
SS + ++ P+F+ L D + D C G P +W NG+ +
Sbjct: 2 SSGSSGMEVAPSFSSVLKDCAVIEGQDFVLQCSVRGTPVPRITWLLNGQPIQY------- 54
Query: 539 QDRYFIQDNV--LTIRYLNPERDPAMYQCRAKNQLKTRYSSAQLRV 582
R + V L I+ PE D Y C A+N L SA + V
Sbjct: 55 -ARSTCEAGVAELHIQDALPE-DHGTYTCLAENALGQVSCSAWVTV 98
Score = 72.4 bits (178), Expect = 1e-15
Identities = 21/75 (28%), Positives = 28/75 (37%), Gaps = 1/75 (1%)
Query: 413 AGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYF-ENFNRILTIPNVKVEDQGEYICRAS 471
G L+C G PVP W G P+ E L I + ED G Y C A
Sbjct: 25 EGQDFVLQCSVRGTPVPRITWLLNGQPIQYARSTCEAGVAELHIQDALPEDHGTYTCLAE 84
Query: 472 NDRSALESSVTISIQ 486
N + S +++
Sbjct: 85 NALGQVSCSAWVTVH 99
Score = 67.0 bits (164), Expect = 1e-13
Identities = 26/105 (24%), Positives = 31/105 (29%), Gaps = 22/105 (20%)
Query: 190 PYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDK 249
P F D + D L C G P P W P+
Sbjct: 12 PSFSSVLKDCAVIEGQ-----DFVLQCSVRGTPVPRITWLLNG-----------QPIQYA 55
Query: 250 RFTLSGGN--LIINDPRQVEDRGSYHCKASNKFGSIISE---SVQ 289
R T G L I D ED G+Y C A N G + +V
Sbjct: 56 RSTCEAGVAELHIQDALP-EDHGTYTCLAENALGQVSCSAWVTVH 99
Score = 48.9 bits (117), Expect = 2e-07
Identities = 16/62 (25%), Positives = 24/62 (38%), Gaps = 8/62 (12%)
Query: 714 IWTHNGVRIGNMDLNELETPNINIDG-GLLEITNASFADAGEYECVVKSTVGKISTKTTV 772
W NG I + G L I +A D G Y C+ ++ +G++S V
Sbjct: 44 TWLLNGQPIQ-------YARSTCEAGVAELHIQDALPEDHGTYTCLAENALGQVSCSAWV 96
Query: 773 IV 774
V
Sbjct: 97 TV 98
>1nct_A Titin; cell adhesion, glycoprotein, transmembrane, repeat, brain,
immunoglobulin fold, alternative splicing, signal,
muscle protein; NMR {Homo sapiens} SCOP: b.1.1.4 PDB:
1ncu_A 1tnm_A 1tnn_A
Length = 106
Score = 89.3 bits (222), Expect = 2e-21
Identities = 22/103 (21%), Positives = 35/103 (33%), Gaps = 5/103 (4%)
Query: 576 SSAQLRVLTLKPSFKKRPLESETYAGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRR 635
TL +P EG + C+ + P P W + G ++ + R
Sbjct: 4 HHHHSSKTTLAARILTKP--RSMTVYEGESARFSCDTDGEPVPTVTWLRKGQVLSTSARH 61
Query: 636 KIFENGN---LLISPVSRDDSGIYSCTATNVHGMDESKGRLIV 675
++ IS V D G YS N G E++ L +
Sbjct: 62 QVTTTKYKSTFEISSVQASDEGNYSVVVENSEGKQEAEFTLTI 104
Score = 74.7 bits (184), Expect = 2e-16
Identities = 22/79 (27%), Positives = 33/79 (41%), Gaps = 4/79 (5%)
Query: 412 KAGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYF----ENFNRILTIPNVKVEDQGEYI 467
G+ R C G PVP+ W R+G L +A + I +V+ D+G Y
Sbjct: 27 YEGESARFSCDTDGEPVPTVTWLRKGQVLSTSARHQVTTTKYKSTFEISSVQASDEGNYS 86
Query: 468 CRASNDRSALESSVTISIQ 486
N E+ T++IQ
Sbjct: 87 VVVENSEGKQEAEFTLTIQ 105
Score = 65.5 bits (160), Expect = 4e-13
Identities = 14/108 (12%), Positives = 29/108 (26%), Gaps = 12/108 (11%)
Query: 479 SSVTISIQAEPNFTIPLTDKHMDNQADLTWTCEAFGVPDVTYSWFRNGELLNSETLPLED 538
+ + ++C+ G P T +W R G+ L
Sbjct: 5 HHHSSKTTLAARILTKPRSMTVYEGESARFSCDTDGEPVPTVTWLRKGQ-------VLST 57
Query: 539 QDRYFIQ----DNVLTIRYLNPERDPAMYQCRAKNQLKTRYSSAQLRV 582
R+ + + I + D Y +N + + L +
Sbjct: 58 SARHQVTTTKYKSTFEISSVQAS-DEGNYSVVVENSEGKQEAEFTLTI 104
Score = 60.1 bits (146), Expect = 3e-11
Identities = 16/103 (15%), Positives = 30/103 (29%), Gaps = 17/103 (16%)
Query: 190 PYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDK 249
+ +P + + SC G P P+ W ++ ++ +
Sbjct: 15 ARILTKPRSMTVYEGE-----SARFSCDTDGEPVPTVTWLRKG--------QVLSTSARH 61
Query: 250 RFTLSGGN--LIINDPRQVEDRGSYHCKASNKFGSIISESVQL 290
+ T + I+ Q D G+Y N G L
Sbjct: 62 QVTTTKYKSTFEISSV-QASDEGNYSVVVENSEGK-QEAEFTL 102
Score = 54.7 bits (132), Expect = 2e-09
Identities = 19/99 (19%), Positives = 38/99 (38%), Gaps = 12/99 (12%)
Query: 684 QLPPKI-------TIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNIN 736
L +I T+ + + C E + V W G + +++ T
Sbjct: 12 TLAARILTKPRSMTVYEGESARFSCDTDGEPVPTV--TWLRKGQVLSTSARHQVTTTK-- 67
Query: 737 IDGGLLEITNASFADAGEYECVVKSTVGKISTKTTVIVE 775
EI++ +D G Y VV+++ GK + T+ ++
Sbjct: 68 -YKSTFEISSVQASDEGNYSVVVENSEGKQEAEFTLTIQ 105
>1mq8_A ICAM-1, intercellular adhesion molecule-1, CD54 antigen; IG
superfamily, rossmann fold, metal mediated protein
interf immune system; HET: NAG; 3.30A {Homo sapiens}
SCOP: b.1.1.3 b.1.1.4
Length = 291
Score = 94.9 bits (235), Expect = 2e-21
Identities = 38/301 (12%), Positives = 82/301 (27%), Gaps = 33/301 (10%)
Query: 408 PEAP--KAGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYFENFNRILTIPNVKVEDQGE 465
P G V + C PLP+ N V++ +
Sbjct: 6 PSKVILPRGGSVLVTCSTSCDQPKLLGIET---PLPKKELLLPGNNRKVYELSNVQEDSQ 62
Query: 466 YICRASNDRSALESSVTISIQAEP-NFTIPLTDKHMDNQADLTWTCEAFGV---PDVTYS 521
+C ++ + +++ P + +LT C+ G ++T
Sbjct: 63 PMCYSNCPDGQSTAKTFLTVYWTPERVELAPLPSWQPVGKNLTLRCQVEGGAPRANLTVV 122
Query: 522 WFRNGELLNSETLPLEDQDRYFIQDNVLTIRYLNPERDPAMYQCRAKNQL--------KT 573
R + L E E + T+ + + A + CR + L +
Sbjct: 123 LLRGEKELKREPAVGEPAEV------TTTVL-VRRDHHGANFSCRTELDLRPQGLELFEN 175
Query: 574 RYSSAQLRVLTLKPSFKKRPLESETYAGEGGNVTIFCNPEA---APKPKFVWKKDGNIIG 630
+ QL+ + P+ + + T+ C+ + + + +
Sbjct: 176 TSAPYQLQTF-VLPATPPQLVSPRVLE-VDTQGTVVCSLDGLFPVSEAQVHLALGDQRLN 233
Query: 631 SGGRRKIFENGNLLISPVSRDDSGIYSCTATNVHGMDESKGRLIVLHGPSYYEQLPPKIT 690
V+ +D G T + G + V + Y P +
Sbjct: 234 PTVTYGNDSFSAKASVSVTAEDEGTQRLTCAVILGNQSQETLQTV----TIYSFPAPNVI 289
Query: 691 I 691
+
Sbjct: 290 L 290
Score = 79.1 bits (194), Expect = 4e-16
Identities = 37/290 (12%), Positives = 69/290 (23%), Gaps = 37/290 (12%)
Query: 506 LTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQDNVLTIRYLNPERDPAMYQC 565
+ TC L E L + + + NV ++ + C
Sbjct: 17 VLVTCSTSCDQPKLLGIETP--LPKKELLLPGNNRKVYELSNV---------QEDSQPMC 65
Query: 566 RAKNQLKTRYSSAQLRVLTLKPSFKKRPLESETYAGEGGNVTIFC---NPEAAPKPKFVW 622
+ + L V + PL S G+ N+T+ C V
Sbjct: 66 YSNCPDGQSTAKTFLTVYWTPERVELAPLPSWQPVGK--NLTLRCQVEGGAPRANLTVVL 123
Query: 623 KKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTATNVHGMDESKG--------RLI 674
+ + + +SC + +L
Sbjct: 124 LRGEKELKREPAVGEPAEVTTTVLVRRDHHGANFSCRTELDLRPQGLELFENTSAPYQLQ 183
Query: 675 VLHGPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPN 734
P+ QL + + CS + A + G ++ P
Sbjct: 184 TFVLPATPPQLVSPRVLEVDTQGTVVCSLDGLFPVSEAQVHLALG--------DQRLNPT 235
Query: 735 INIDGGLLEIT---NASFADAGEYECVVKSTVGKISTKT--TVIVEGPPG 779
+ + + D G +G S +T TV + P
Sbjct: 236 VTYGNDSFSAKASVSVTAEDEGTQRLTCAVILGNQSQETLQTVTIYSFPA 285
Score = 30.6 bits (68), Expect = 2.2
Identities = 10/96 (10%), Positives = 30/96 (31%), Gaps = 12/96 (12%)
Query: 686 PPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEIT 745
P K+ + ++ + CS + + ++ ++ + +
Sbjct: 6 PSKVILPRGGSVLVTCST------------SCDQPKLLGIETPLPKKELLLPGNNRKVYE 53
Query: 746 NASFADAGEYECVVKSTVGKISTKTTVIVEGPPGLP 781
++ + + C G+ + KT + V P
Sbjct: 54 LSNVQEDSQPMCYSNCPDGQSTAKTFLTVYWTPERV 89
>3bfo_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1
(isoform 2); hydrolase, immunoglobulin domain, nucleus,
protease; 1.15A {Homo sapiens}
Length = 91
Score = 88.2 bits (219), Expect = 3e-21
Identities = 26/78 (33%), Positives = 36/78 (46%), Gaps = 5/78 (6%)
Query: 413 AGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYFENFNRILTIPNVKVEDQGEYICRASN 472
G + L+CVA G P+P Y W + PL ++ +P V +E QG Y C N
Sbjct: 17 PGSTLVLQCVAVGSPIPHYQWFKNELPLTHET-----KKLYMVPYVDLEHQGTYWCHVYN 71
Query: 473 DRSALESSVTISIQAEPN 490
DR + +S I E N
Sbjct: 72 DRDSQDSKKVEIIIDELN 89
Score = 72.8 bits (179), Expect = 8e-16
Identities = 16/95 (16%), Positives = 32/95 (33%), Gaps = 8/95 (8%)
Query: 586 KPSFKKRPLESETYAGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGNLLI 645
K P + G + + C +P P + W K+ + ++ ++
Sbjct: 3 KLQICVEP--TSQKLMPGSTLVLQCVAVGSPIPHYQWFKNELPLTHETKKL------YMV 54
Query: 646 SPVSRDDSGIYSCTATNVHGMDESKGRLIVLHGPS 680
V + G Y C N +SK I++ +
Sbjct: 55 PYVDLEHQGTYWCHVYNDRDSQDSKKVEIIIDELN 89
Score = 68.9 bits (169), Expect = 1e-14
Identities = 22/109 (20%), Positives = 39/109 (35%), Gaps = 21/109 (19%)
Query: 190 PYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDK 249
+PT + + L C A G P P Y+WFK + PL+ +
Sbjct: 4 LQICVEPTSQKLMPG-----STLVLQCVAVGSPIPHYQWFKNE-----------LPLTHE 47
Query: 250 RFTLSGGNLIINDPRQVEDRGSYHCKASNKFGSIISESVQLAFGFIGEF 298
+ ++ +E +G+Y C N S S+ V++ +
Sbjct: 48 ----TKKLYMVPYV-DLEHQGTYWCHVYNDRDSQDSKKVEIIIDELNNL 91
Score = 67.0 bits (164), Expect = 8e-14
Identities = 19/103 (18%), Positives = 35/103 (33%), Gaps = 13/103 (12%)
Query: 487 AEPNFTIPLTDKHMDNQADLTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQD 546
++ + T + + + L C A G P Y WF+N L ET
Sbjct: 2 SKLQICVEPTSQKLMPGSTLVLQCVAVGSPIPHYQWFKNELPLTHET------------K 49
Query: 547 NVLTIRYLNPERDPAMYQCRAKNQLKTRYSSAQLRVLTLKPSF 589
+ + Y++ E Y C N ++ S ++ +
Sbjct: 50 KLYMVPYVDLE-HQGTYWCHVYNDRDSQDSKKVEIIIDELNNL 91
Score = 50.0 bits (120), Expect = 7e-08
Identities = 17/103 (16%), Positives = 29/103 (28%), Gaps = 22/103 (21%)
Query: 686 PPKITI-------AAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINID 738
+I + L L+C A + Y W N + + +
Sbjct: 3 KLQICVEPTSQKLMPGSTLVLQCVAVGSPIPH--YQWFKNELPLTHET------------ 48
Query: 739 GGLLEITNASFADAGEYECVVKSTVGKI-STKTTVIVEGPPGL 780
L + G Y C V + S K +I++ L
Sbjct: 49 KKLYMVPYVDLEHQGTYWCHVYNDRDSQDSKKVEIIIDELNNL 91
>1u2h_A APEG-1, aortic preferentially expressed protein 1; structural
genomics, IG-fold I-SET, RGD motif, homophilic adhesion,
arterial smooth muscle cells; 0.96A {Homo sapiens}
Length = 99
Score = 87.7 bits (218), Expect = 5e-21
Identities = 26/93 (27%), Positives = 39/93 (41%), Gaps = 6/93 (6%)
Query: 587 PSFKKRPLESETYAGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGN---- 642
P+FK + EG +V + + PKP W ++ + RR E
Sbjct: 6 PTFKVSL--MDQSVREGQDVIMSIRVQGEPKPVVSWLRNRQPVRPDQRRFAEEAEGGLCR 63
Query: 643 LLISPVSRDDSGIYSCTATNVHGMDESKGRLIV 675
L I R D+G Y+C A N +G + + RL V
Sbjct: 64 LRILAAERGDAGFYTCKAVNEYGARQCEARLEV 96
Score = 73.5 bits (181), Expect = 5e-16
Identities = 26/101 (25%), Positives = 39/101 (38%), Gaps = 11/101 (10%)
Query: 486 QAEPNFTIPLTDKHMDNQADLTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQ 545
+A P F + L D+ + D+ + G P SW RN + + DQ R+ +
Sbjct: 3 KAPPTFKVSLMDQSVREGQDVIMSIRVQGEPKPVVSWLRNRQPVR------PDQRRFAEE 56
Query: 546 DN----VLTIRYLNPERDPAMYQCRAKNQLKTRYSSAQLRV 582
L I D Y C+A N+ R A+L V
Sbjct: 57 AEGGLCRLRILAAERG-DAGFYTCKAVNEYGARQCEARLEV 96
Score = 70.0 bits (172), Expect = 7e-15
Identities = 19/80 (23%), Positives = 30/80 (37%), Gaps = 5/80 (6%)
Query: 414 GDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYF-----ENFNRILTIPNVKVEDQGEYIC 468
G V + G P P +W R P+ + E L I + D G Y C
Sbjct: 20 GQDVIMSIRVQGEPKPVVSWLRNRQPVRPDQRRFAEEAEGGLCRLRILAAERGDAGFYTC 79
Query: 469 RASNDRSALESSVTISIQAE 488
+A N+ A + + ++ E
Sbjct: 80 KAVNEYGARQCEARLEVRGE 99
Score = 63.4 bits (155), Expect = 2e-12
Identities = 23/101 (22%), Positives = 33/101 (32%), Gaps = 19/101 (18%)
Query: 190 PYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDK 249
P F D + D+ +S G P P W + + P +
Sbjct: 6 PTFKVSLMDQSVREGQ-----DVIMSIRVQGEPKPVVSWLRNR--------QPVRP-DQR 51
Query: 250 RFTLSGGN----LIINDPRQVEDRGSYHCKASNKFGSIISE 286
RF L I + D G Y CKA N++G+ E
Sbjct: 52 RFAEEAEGGLCRLRILAA-ERGDAGFYTCKAVNEYGARQCE 91
Score = 51.1 bits (123), Expect = 3e-08
Identities = 21/102 (20%), Positives = 33/102 (32%), Gaps = 15/102 (14%)
Query: 684 QLPPKI-------TIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNIN 736
+ PP ++ +++ + E V W N + E
Sbjct: 3 KAPPTFKVSLMDQSVREGQDVIMSIRVQGEPKPVV--SWLRNRQPVRPDQRRFAEEA--- 57
Query: 737 IDGGL--LEITNASFADAGEYECVVKSTVGKISTKTTVIVEG 776
+GGL L I A DAG Y C + G + + V G
Sbjct: 58 -EGGLCRLRILAAERGDAGFYTCKAVNEYGARQCEARLEVRG 98
>1hnf_A CD2; T lymphocyte adhesion glycoprotein; HET: NAG; 2.50A {Homo
sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1cdb_A 1gya_A*
1qa9_A
Length = 182
Score = 90.3 bits (224), Expect = 5e-21
Identities = 31/195 (15%), Positives = 62/195 (31%), Gaps = 36/195 (18%)
Query: 597 ETYAGEGGNVT--IFCNPEAAPKPKFVWKKDGN------------IIGSGGRRKIFENGN 642
ET+ G ++ I + W+K + K+F+NG
Sbjct: 8 ETWGALGQDINLDIPSFQMSDDIDDIKWEKTSDKKKIAQFRKEKETFKEKDTYKLFKNGT 67
Query: 643 LLISPVSRDDSGIYSCTATNVHGMDESKGRLIVLHGPSYYEQLP-PKITIAAHRNLQLRC 701
L I + DD IY + + G + + + E++ PKI+ N L C
Sbjct: 68 LKIKHLKTDDQDIYKVSIYDTKGKNVLEKIFDL----KIQERVSKPKISWTC-INTTLTC 122
Query: 702 SAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEITNASFADAGEYECVVKS 761
D +G ++ + ++ + + + +++C +
Sbjct: 123 EV--MNGTDPELNLYQDGK-------------HLKLSQRVI-THKWTTSLSAKFKCTAGN 166
Query: 762 TVGKISTKTTVIVEG 776
V K S+ V
Sbjct: 167 KVSKESSVEPVSCPE 181
Score = 88.8 bits (220), Expect = 2e-20
Identities = 25/184 (13%), Positives = 53/184 (28%), Gaps = 33/184 (17%)
Query: 414 GDKVRLECVAF--GYPVPSYNWTRRGSP-------------LPRNAYFENFNRILTIPNV 458
G + L+ +F + W + ++ Y N L I ++
Sbjct: 14 GQDINLDIPSFQMSDDIDDIKWEKTSDKKKIAQFRKEKETFKEKDTYKLFKNGTLKIKHL 73
Query: 459 KVEDQGEYICRASNDRSALESSVTISIQAEPNFTIPLTDKHMDNQADLTWTCEAFGVPDV 518
K +DQ Y + + ++ + + P + T TCE D
Sbjct: 74 KTDDQDIYKVSIYDTKGKNVLEKIFDLKIQERVSKPKISW---TCINTTLTCEVMNGTDP 130
Query: 519 TYSWFRNGELLNSETLPLEDQDRYFIQDNVLTIRYLNPERDPAMYQCRAKNQLKTRYSSA 578
+ +++G+ L + A ++C A N++ S
Sbjct: 131 ELNLYQDGKHLKL--------------SQRVITHKWTTS-LSAKFKCTAGNKVSKESSVE 175
Query: 579 QLRV 582
+
Sbjct: 176 PVSC 179
Score = 81.9 bits (202), Expect = 5e-18
Identities = 24/174 (13%), Positives = 52/174 (29%), Gaps = 25/174 (14%)
Query: 504 ADLTWTCEAFGVPDVTYSWFRNGE-----LLNSETLPLEDQDRYFIQDN-VLTIRYLNPE 557
+L W + + E +++D Y + N L I++L +
Sbjct: 17 INLDIPSFQMSDDIDDIKWEKTSDKKKIAQFRKEKETFKEKDTYKLFKNGTLKIKHLKTD 76
Query: 558 RDPAMYQCRAKNQLKTRYSSA--QLRVLTLKPSFKKRPLESETYAGEGGNVTIFCNPEAA 615
D +Y+ + L++ + + N T+ C
Sbjct: 77 -DQDIYKVSIYDTKGKNVLEKIFDLKIQ--------ERVSKPKISWTCINTTLTCEVMNG 127
Query: 616 PKPKFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTATNVHGMDES 669
P+ +DG + + + ++ + S + CTA N + S
Sbjct: 128 TDPELNLYQDG--------KHLKLSQRVITHKWTTSLSAKFKCTAGNKVSKESS 173
Score = 74.1 bits (182), Expect = 2e-15
Identities = 22/150 (14%), Positives = 39/150 (26%), Gaps = 21/150 (14%)
Query: 339 VEEDKRVFVSYDGALYFSALEQIDAGNYSCNVQSKVSDTGRNGPFFPLKVFPHSNFQQLK 398
+E + +G L L+ D Y ++ F LK+
Sbjct: 54 FKEKDTYKLFKNGTLKIKHLKTDDQDIYKVSIYDTKGKNVLEKIFD-LKIQE-------- 104
Query: 399 FPNNFPKTFPEAPKAGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYFENFNRILTIPNV 458
+ P+ L C P N + G L ++ +
Sbjct: 105 -----RVSKPKISWTCINTTLTCEVMNGTDPELNLYQDGKHLK-------LSQRVITHKW 152
Query: 459 KVEDQGEYICRASNDRSALESSVTISIQAE 488
++ C A N S S +S +
Sbjct: 153 TTSLSAKFKCTAGNKVSKESSVEPVSCPEK 182
Score = 57.2 bits (138), Expect = 2e-09
Identities = 25/176 (14%), Positives = 43/176 (24%), Gaps = 31/176 (17%)
Query: 210 NDITLSC--YAGGYPNPSYEWFKED---YVQDRLVANLIDPLSDKRFTLSGGNLIINDPR 264
DI L + +W K + D G L I +
Sbjct: 15 QDINLDIPSFQMSDDIDDIKWEKTSDKKKIAQFRKEKETFKEKDTYKLFKNGTLKIKHLK 74
Query: 265 QVEDRGSYHCKASNKFGSIISESVQLAFGFIGEFNLK-----RAPEIGNQNWGKAMFCDP 319
+D+ Y + G + E F+LK P+I + C+
Sbjct: 75 T-DDQDIYKVSIYDTKGKNVLE---------KIFDLKIQERVSKPKISWTCINTTLTCE- 123
Query: 320 PTNYPGVNYYWARDYFPNFVEEDKRVFVSYDGALYFSALEQIDAGNYSCNVQSKVS 375
N +D + + + + C +KVS
Sbjct: 124 VMNGTDPELNLYQDGKH----------LKLSQRVITHKWTTSLSAKFKCTAGNKVS 169
Score = 44.9 bits (106), Expect = 3e-05
Identities = 11/73 (15%), Positives = 19/73 (26%), Gaps = 18/73 (24%)
Query: 210 NDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVEDR 269
+ TL+C +P +++ L LS +
Sbjct: 116 INTTLTCEVMNGTDPELNLYQDG-----------KHLK-----LSQRVITHKWTT--SLS 157
Query: 270 GSYHCKASNKFGS 282
+ C A NK
Sbjct: 158 AKFKCTAGNKVSK 170
>3sgj_C Human FCG3A receptor; receptor complex, FC receptor, antibody,
immune system; HET: NAG BMA MAN FUC; 2.20A {Homo
sapiens} PDB: 3sgk_C*
Length = 204
Score = 91.1 bits (226), Expect = 6e-21
Identities = 31/178 (17%), Positives = 56/178 (31%), Gaps = 28/178 (15%)
Query: 506 LTWTCEAFGVP-DVTYSWFRNGELLNSETLPLEDQDRYFIQDNVLTIRYLNPERDPAMYQ 564
+T C+ P D + WF N L++S+ + I + D Y+
Sbjct: 25 VTLKCQGAYSPEDQSTQWFHNESLISSQA-------------SSYFIDAATVD-DSGEYR 70
Query: 565 CRAKNQLKTRYSSAQLRVLTLKPSFKKRPLESETYAGEGGNVTIFCNPEAAPKP-KFVWK 623
C+ + T QL V + P E + + C+ K +
Sbjct: 71 CQTQL--STLSDPVQLEVHI-GWLLLQAP---RWVFKEEDPIHLRCHSWKNTALHKVTYL 124
Query: 624 KDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTATNVHGMDESKG-RLIVLHGPS 680
++G N + I + DSG Y C S+ ++ + G +
Sbjct: 125 QNGKGRKYFH-----HNSDFYIPKATLKDSGSYFCRGLVGSKNVSSETVQITITQGLA 177
Score = 87.6 bits (217), Expect = 8e-20
Identities = 33/194 (17%), Positives = 55/194 (28%), Gaps = 24/194 (12%)
Query: 414 GDKVRLECVAFGYPVP-SYNWTRRGSPLPRNAYFENFNRILTIPNVKVEDQGEYICRASN 472
D V L+C P S W S + I V+D GEY C+
Sbjct: 22 KDSVTLKCQGAYSPEDQSTQWFHNESLISSQ------ASSYFIDAATVDDSGEYRCQTQL 75
Query: 473 DRSALESSVTISIQAEPNFTIPLTDKHMDNQADLTWTCEAF-GVPDVTYSWFRNGELLNS 531
S L V + + + + C ++ ++ +NG+
Sbjct: 76 --STLSDPVQLEVHIGWLLLQAPRWVFKEED-PIHLRCHSWKNTALHKVTYLQNGKGR-- 130
Query: 532 ETLPLEDQDRYFIQDNVLTIRYLNPERDPAMYQCRAKNQLKTRYS-SAQLRVLTLKPSFK 590
+YF ++ I + D Y CR K S + Q+ +
Sbjct: 131 ---------KYFHHNSDFYIPKATLK-DSGSYFCRGLVGSKNVSSETVQITITQGLAVST 180
Query: 591 KRPLESETYAGEGG 604
Y G+
Sbjct: 181 ISSFFPPGYQGKKK 194
Score = 85.7 bits (212), Expect = 4e-19
Identities = 33/182 (18%), Positives = 55/182 (30%), Gaps = 25/182 (13%)
Query: 602 EGGNVTIFCNPEAAPKP-KFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTA 660
E +VT+ C +P+ W + ++I S + + I + DDSG Y C
Sbjct: 21 EKDSVTLKCQGAYSPEDQSTQWFHNESLISS-------QASSYFIDAATVDDSGEYRCQT 73
Query: 661 TNVHGMDESKGRLIVLHGPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGV 720
D +L V G + P+ + LRC + L + NG
Sbjct: 74 QLSTLSDPV--QLEVHIGWLLLQ--APRWVFKEEDPIHLRCHSWKNTAL-HKVTYLQNGK 128
Query: 721 RIGNMDLNELETPNINIDGGLLEITNASFADAGEYECVVK-STVGKISTKTTVIVEGPPG 779
I A+ D+G Y C + S + +
Sbjct: 129 GRKYFH-----------HNSDFYIPKATLKDSGSYFCRGLVGSKNVSSETVQITITQGLA 177
Query: 780 LP 781
+
Sbjct: 178 VS 179
Score = 79.9 bits (197), Expect = 4e-17
Identities = 31/176 (17%), Positives = 55/176 (31%), Gaps = 31/176 (17%)
Query: 317 CDPPTNYPGVNYYWARDYFPNFVEEDKRVFVSYDGALYFSALEQIDAGNYSCNVQ-SKVS 375
C + + W + + + S + + A D+G Y C Q S +S
Sbjct: 29 CQGAYSPEDQSTQWFHN---------ESLISSQASSYFIDAATVDDSGEYRCQTQLSTLS 79
Query: 376 DTGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPEAPKAGDKVRLECVAF-GYPVPSYNWT 434
D L+V + K D + L C ++ + +
Sbjct: 80 DP------VQLEVH---------IGWLLLQAPRWVFKEEDPIHLRCHSWKNTALHKVTYL 124
Query: 435 RRGSPLPRNAYFENFNRILTIPNVKVEDQGEYICRASNDRSALES-SVTISIQAEP 489
+ G + + N IP ++D G Y CR + S +V I+I
Sbjct: 125 QNGKGRK----YFHHNSDFYIPKATLKDSGSYFCRGLVGSKNVSSETVQITITQGL 176
Score = 48.7 bits (116), Expect = 2e-06
Identities = 26/165 (15%), Positives = 46/165 (27%), Gaps = 43/165 (26%)
Query: 212 ITLSCYAGGYPNP-SYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVEDRG 270
+TL C P S +WF + + + I+ V+D G
Sbjct: 25 VTLKCQGAYSPEDQSTQWFHNE----------------SLISSQASSYFIDAAT-VDDSG 67
Query: 271 SYHCKASNKFGSIISESVQLAFGFIGEFNLKRAPEIGNQNWGKAM-------FCDPPTNY 323
Y C+ S +S+ VQL + + C N
Sbjct: 68 EYRCQTQL---STLSDPVQL--------EVHIGWLLLQAPRWVFKEEDPIHLRCHSWKNT 116
Query: 324 PGVNYYWARDYFPNFVEEDKRVFVSYDGALYFSALEQIDAGNYSC 368
+ ++ R + ++ Y D+G+Y C
Sbjct: 117 ALHKVTYLQN-------GKGRKYFHHNSDFYIPKATLKDSGSYFC 154
Score = 47.2 bits (112), Expect = 6e-06
Identities = 13/82 (15%), Positives = 29/82 (35%), Gaps = 16/82 (19%)
Query: 210 NDITLSCYA-GGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVED 268
+ I L C++ + + +++ + I ++D
Sbjct: 104 DPIHLRCHSWKNTALHKVTYLQNG--------------KGRKYFHHNSDFYIP-KATLKD 148
Query: 269 RGSYHCKASNKFGSIISESVQL 290
GSY C+ ++ SE+VQ+
Sbjct: 149 SGSYFCRGLVGSKNVSSETVQI 170
>1fnl_A Low affinity immunoglobulin gamma FC region receptor III-B; beta
sandwich, immunoglobulin-like, immune system receptor;
1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1e4j_A
1e4k_C* 1t83_C* 1t89_C* 3ay4_C*
Length = 175
Score = 89.5 bits (222), Expect = 1e-20
Identities = 29/167 (17%), Positives = 48/167 (28%), Gaps = 27/167 (16%)
Query: 506 LTWTCEAFGVP-DVTYSWFRNGELLNSETLPLEDQDRYFIQDNVLTIRYLNPERDPAMYQ 564
+T C+ P D + WF N L++S+ + I D Y+
Sbjct: 25 VTLKCQGAYSPEDNSTQWFHNESLISSQA-------------SSYFIDAATVN-DSGEYR 70
Query: 565 CRAKNQLKTRYSSAQLRVLTLKPSFKKRPLESETYAGEGGNVTIFCNPEA-APKPKFVWK 623
C+ T QL V + E + + C+ K +
Sbjct: 71 CQTNL--STLSDPVQLEVHIGWLLLQ----APRWVFKEEDPIHLRCHSWKNTALHKVTYL 124
Query: 624 KDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTATNVHGMDESK 670
++G N + I + DSG Y C S+
Sbjct: 125 QNGKDRKYFH-----HNSDFHIPKATLKDSGSYFCRGLVGSKNVSSE 166
Score = 88.0 bits (218), Expect = 3e-20
Identities = 30/171 (17%), Positives = 50/171 (29%), Gaps = 24/171 (14%)
Query: 414 GDKVRLECVAFGYPVP-SYNWTRRGSPLPRNAYFENFNRILTIPNVKVEDQGEYICRASN 472
D V L+C P S W S + I V D GEY C+ +
Sbjct: 22 KDSVTLKCQGAYSPEDNSTQWFHNESLISSQ------ASSYFIDAATVNDSGEYRCQTNL 75
Query: 473 DRSALESSVTISIQAEPNFTIPLTDKHMDNQADLTWTCEAF-GVPDVTYSWFRNGELLNS 531
S L V + + + + C ++ ++ +NG+
Sbjct: 76 --STLSDPVQLEVHIGWLLLQAPRWVFKEED-PIHLRCHSWKNTALHKVTYLQNGKDR-- 130
Query: 532 ETLPLEDQDRYFIQDNVLTIRYLNPERDPAMYQCRAKNQLKTRYSSAQLRV 582
+YF ++ I + D Y CR SS + +
Sbjct: 131 ---------KYFHHNSDFHIPKATLK-DSGSYFCRGLVG-SKNVSSETVNI 170
Score = 83.0 bits (205), Expect = 2e-18
Identities = 32/175 (18%), Positives = 54/175 (30%), Gaps = 25/175 (14%)
Query: 602 EGGNVTIFCNPEAAPKP-KFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTA 660
E +VT+ C +P+ W + ++I S + + I + +DSG Y C
Sbjct: 21 EKDSVTLKCQGAYSPEDNSTQWFHNESLISS-------QASSYFIDAATVNDSGEYRCQT 73
Query: 661 TNVHGMDESKGRLIVLHGPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGV 720
D +L V G + P+ + LRC + L + NG
Sbjct: 74 NLSTLSDPV--QLEVHIGWLLLQ--APRWVFKEEDPIHLRCHSWKNTALH-KVTYLQNGK 128
Query: 721 RIGNMDLNELETPNINIDGGLLEITNASFADAGEYECVVKSTVGKI-STKTTVIV 774
I A+ D+G Y C + S + +
Sbjct: 129 DRKYFH-----------HNSDFHIPKATLKDSGSYFCRGLVGSKNVSSETVNITI 172
Score = 81.1 bits (200), Expect = 8e-18
Identities = 30/173 (17%), Positives = 54/173 (31%), Gaps = 31/173 (17%)
Query: 317 CDPPTNYPGVNYYWARDYFPNFVEEDKRVFVSYDGALYFSALEQIDAGNYSCNVQ-SKVS 375
C + + W + + + S + + A D+G Y C S +S
Sbjct: 29 CQGAYSPEDNSTQWFHN---------ESLISSQASSYFIDAATVNDSGEYRCQTNLSTLS 79
Query: 376 DTGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPEAPKAGDKVRLECVAF-GYPVPSYNWT 434
D L+V + K D + L C ++ + +
Sbjct: 80 DP------VQLEVH---------IGWLLLQAPRWVFKEEDPIHLRCHSWKNTALHKVTYL 124
Query: 435 RRGSPLPRNAYFENFNRILTIPNVKVEDQGEYICRASNDRSALES-SVTISIQ 486
+ G + + N IP ++D G Y CR + S +V I+I
Sbjct: 125 QNGKDRK----YFHHNSDFHIPKATLKDSGSYFCRGLVGSKNVSSETVNITIT 173
Score = 52.2 bits (125), Expect = 7e-08
Identities = 25/163 (15%), Positives = 45/163 (27%), Gaps = 33/163 (20%)
Query: 212 ITLSCYAGGYPNP-SYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVEDRG 270
+TL C P S +WF + + + I+ V D G
Sbjct: 25 VTLKCQGAYSPEDNSTQWFHNE----------------SLISSQASSYFIDAAT-VNDSG 67
Query: 271 SYHCKASNKFGSIISESVQLAFGFIGEFNLKRAPEIGNQNWGKAMF--CDPPTNYPGVNY 328
Y C+ + S +S+ VQL + C N
Sbjct: 68 EYRCQTNL---STLSDPVQLEVHIGWLLLQAPRWVF---KEEDPIHLRCHSWKNTALHKV 121
Query: 329 YWARDYFPNFVEEDKRVFVSYDGALYFSALEQIDAGNYSCNVQ 371
+ ++ R + ++ + D+G+Y C
Sbjct: 122 TYLQN-------GKDRKYFHHNSDFHIPKATLKDSGSYFCRGL 157
Score = 49.5 bits (118), Expect = 6e-07
Identities = 13/82 (15%), Positives = 29/82 (35%), Gaps = 16/82 (19%)
Query: 210 NDITLSCYA-GGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVED 268
+ I L C++ + + D+++ + I ++D
Sbjct: 104 DPIHLRCHSWKNTALHKVTYLQNG--------------KDRKYFHHNSDFHIPKA-TLKD 148
Query: 269 RGSYHCKASNKFGSIISESVQL 290
GSY C+ ++ SE+V +
Sbjct: 149 SGSYFCRGLVGSKNVSSETVNI 170
Score = 43.3 bits (102), Expect = 8e-05
Identities = 21/128 (16%), Positives = 40/128 (31%), Gaps = 17/128 (13%)
Query: 686 PPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEIT 745
P ++ ++ L+C D + W HN I + I
Sbjct: 14 PQWYSVLEKDSVTLKCQG-AYSPEDNSTQWFHNESLISS-------------QASSYFID 59
Query: 746 NASFADAGEYECVVKSTVGKISTKTTVIVEGPPGLPGGVQVVEVHKTSATIQ-WTDGATN 804
A+ D+GEY C + S + V L + V + ++ + T
Sbjct: 60 AATVNDSGEYRCQTNLSTL--SDPVQLEVHIGWLLLQAPRWVFKEEDPIHLRCHSWKNTA 117
Query: 805 GRPITHYK 812
+T+ +
Sbjct: 118 LHKVTYLQ 125
>2v9t_A Roundabout homolog 1; structural protein-receptor complex,
developmental protein, domain, roundabout, chemotaxis,
LRR domain; 1.70A {Homo sapiens}
Length = 117
Score = 86.8 bits (215), Expect = 2e-20
Identities = 29/118 (24%), Positives = 40/118 (33%), Gaps = 13/118 (11%)
Query: 578 AQLRVLTLKPSFKKRPLESETYAGEGGNVTIFCNPEAAPKPKFVWKKDGNII-----GSG 632
LR P + P S+ +G T+ C E P P W K G +
Sbjct: 1 GSLRQEDFPPRIVEHP--SDLIVSKGEPATLNCKAEGRPTPTIEWYKGGERVETDKDDPR 58
Query: 633 GRRKIFENGNLLI-----SPVSRDDSGIYSCTATNVHGMDESKG-RLIVLHGPSYYEQ 684
R + +G+L SR D G+Y C A N G S L V ++
Sbjct: 59 SHRMLLPSGSLFFLRIVHGRKSRPDEGVYVCVARNYLGEAVSHDASLEVAAAAHHHHH 116
Score = 77.9 bits (192), Expect = 2e-17
Identities = 28/105 (26%), Positives = 40/105 (38%), Gaps = 13/105 (12%)
Query: 190 PYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDK 249
P ++ P+D++ TL+C A G P P+ EW+K V D
Sbjct: 10 PRIVEHPSDLIVSKG-----EPATLNCKAEGRPTPTIEWYKGG----ERVETDKDDPRSH 60
Query: 250 RFTLSGGNLII----NDPRQVEDRGSYHCKASNKFGSIISESVQL 290
R L G+L + + D G Y C A N G +S L
Sbjct: 61 RMLLPSGSLFFLRIVHGRKSRPDEGVYVCVARNYLGEAVSHDASL 105
Score = 66.8 bits (163), Expect = 2e-13
Identities = 23/109 (21%), Positives = 39/109 (35%), Gaps = 17/109 (15%)
Query: 402 NFPKTFPEAPK-----AGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYFENFNRI---- 452
+FP E P G+ L C A G P P+ W + G + + +R+
Sbjct: 7 DFPPRIVEHPSDLIVSKGEPATLNCKAEGRPTPTIEWYKGGERVETDKDDPRSHRMLLPS 66
Query: 453 --LTIPNV-----KVEDQGEYICRASNDR-SALESSVTISIQAEPNFTI 493
L + D+G Y+C A N A+ ++ + A +
Sbjct: 67 GSLFFLRIVHGRKSRPDEGVYVCVARNYLGEAVSHDASLEVAAAAHHHH 115
Score = 60.6 bits (147), Expect = 3e-11
Identities = 24/108 (22%), Positives = 36/108 (33%), Gaps = 7/108 (6%)
Query: 489 PNFTIPLTDKHMDNQADLTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQDNV 548
P +D + T C+A G P T W++ GE + ++ R +
Sbjct: 10 PRIVEHPSDLIVSKGEPATLNCKAEGRPTPTIEWYKGGERVETDKDDPRSH-RMLLPSGS 68
Query: 549 LTIRYLNPER----DPAMYQCRAKNQLKTRYS-SAQLRVLTLKPSFKK 591
L + R D +Y C A+N L S A L V
Sbjct: 69 LFFLRIVHGRKSRPDEGVYVCVARNYLGEAVSHDASLEVAAA-AHHHH 115
Score = 45.6 bits (108), Expect = 4e-06
Identities = 21/113 (18%), Positives = 34/113 (30%), Gaps = 24/113 (21%)
Query: 683 EQLPPKIT-------IAAHRNLQLRCSAH-----TEELLDVAYIWTHNGVRIGNMDLNEL 730
E PP+I ++ L C A T W G R+ +
Sbjct: 6 EDFPPRIVEHPSDLIVSKGEPATLNCKAEGRPTPT-------IEWYKGGERVETDKDDPR 58
Query: 731 ETPNINIDGGLL----EITNASFADAGEYECVVKSTVGKISTKT-TVIVEGPP 778
+ G L S D G Y CV ++ +G+ + ++ V
Sbjct: 59 SHRMLLPSGSLFFLRIVHGRKSRPDEGVYVCVARNYLGEAVSHDASLEVAAAA 111
>2dm3_A KIAA0992 protein, palladin; beta-sandwich, myopalladin,
actin-associated scaffold, structural genomics, NPPSFA;
NMR {Homo sapiens}
Length = 110
Score = 85.9 bits (213), Expect = 3e-20
Identities = 29/99 (29%), Positives = 42/99 (42%), Gaps = 6/99 (6%)
Query: 586 KPSFKKRPLESETYAGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGN--- 642
+P F + P + EG + C P P W+ DG + K+ N
Sbjct: 9 RPHFLQAP--GDLTVQEGKLCRMDCKVSGLPTPDLSWQLDGKPVRPDSAHKMLVRENGVH 66
Query: 643 -LLISPVSRDDSGIYSCTATNVHGMDESKGRLIVLHGPS 680
L+I PV+ D+GIY+C ATN G + L+V S
Sbjct: 67 SLIIEPVTSRDAGIYTCIATNRAGQNSFSLELVVAAKES 105
Score = 70.1 bits (172), Expect = 1e-14
Identities = 22/82 (26%), Positives = 34/82 (41%), Gaps = 5/82 (6%)
Query: 414 GDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYF-----ENFNRILTIPNVKVEDQGEYIC 468
G R++C G P P +W G P+ ++ EN L I V D G Y C
Sbjct: 24 GKLCRMDCKVSGLPTPDLSWQLDGKPVRPDSAHKMLVRENGVHSLIIEPVTSRDAGIYTC 83
Query: 469 RASNDRSALESSVTISIQAEPN 490
A+N S+ + + A+ +
Sbjct: 84 IATNRAGQNSFSLELVVAAKES 105
Score = 62.8 bits (153), Expect = 5e-12
Identities = 20/100 (20%), Positives = 33/100 (33%), Gaps = 13/100 (13%)
Query: 489 PNFTIPLTDKHMDNQADLTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQDN- 547
P+F D + C+ G+P SW +G+ P+ + +
Sbjct: 10 PHFLQAPGDLTVQEGKLCRMDCKVSGLPTPDLSWQLDGK-------PVRPDSAHKMLVRE 62
Query: 548 ----VLTIRYLNPERDPAMYQCRAKNQLKTRYSSAQLRVL 583
L I + D +Y C A N+ S +L V
Sbjct: 63 NGVHSLIIEPVTSR-DAGIYTCIATNRAGQNSFSLELVVA 101
Score = 60.8 bits (148), Expect = 2e-11
Identities = 24/104 (23%), Positives = 37/104 (35%), Gaps = 18/104 (17%)
Query: 190 PYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDK 249
P+F++ P D+ K + C G P P W + + P S
Sbjct: 10 PHFLQAPGDLTVQEGK-----LCRMDCKVSGLPTPDLSWQLDG--------KPVRPDSAH 56
Query: 250 RFTLSGGN---LIINDPRQVEDRGSYHCKASNKFGSIISESVQL 290
+ + LII D G Y C A+N+ G S++L
Sbjct: 57 KMLVRENGVHSLIIEPV-TSRDAGIYTCIATNRAGQNSF-SLEL 98
Score = 54.7 bits (132), Expect = 3e-09
Identities = 21/120 (17%), Positives = 37/120 (30%), Gaps = 27/120 (22%)
Query: 678 GPSYYEQLPPKI-------TIAAHRNLQLRCSAH---TEELLDVAYIWTHNGVRIGNMDL 727
G S P T+ + ++ C T +L W +G +
Sbjct: 1 GSSGSSGFRPHFLQAPGDLTVQEGKLCRMDCKVSGLPTPDL-----SWQLDGKPV----- 50
Query: 728 NELETPNINI---DGGL--LEITNASFADAGEYECVVKSTVGKISTKTTVIVEGPPGLPG 782
+ + G+ L I + DAG Y C+ + G+ S ++V P
Sbjct: 51 --RPDSAHKMLVRENGVHSLIIEPVTSRDAGIYTCIATNRAGQNSFSLELVVAAKESGPS 108
>1hng_A CD2; T lymphocyte adhesion glycoprotein; 2.80A {Rattus rattus}
SCOP: b.1.1.1 b.1.1.3
Length = 176
Score = 88.1 bits (218), Expect = 4e-20
Identities = 32/191 (16%), Positives = 58/191 (30%), Gaps = 33/191 (17%)
Query: 595 ESET-YAGEGGNVT--IFCNPEAAPKPKFVWKKDGNIIGS----------GGRRKIFENG 641
+S T + G + I + W++ ++ G +I NG
Sbjct: 2 DSGTVWGALGHGINLNIPNFQMTDDIDEVRWERGSTLVAEFKRKMKPFLKSGAFEILANG 61
Query: 642 NLLISPVSRDDSGIYSCTATNVHGMDESKGRLIVLHGPSYYEQLPPKITIAAHRNLQLRC 701
+L I ++RDDSG Y+ T + +G L + E + + N L C
Sbjct: 62 DLKIKNLTRDDSGTYNVTVYSTNGTRILNKALDL----RILEMVSKPMIYWECSNATLTC 117
Query: 702 SAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEITNASFADAGEYECVVKS 761
E DV + ++ + N ++C +
Sbjct: 118 EV--LEGTDVELKLYQGKEHLRSLRQKTMSYQWTN--------------LRAPFKCKAVN 161
Query: 762 TVGKISTKTTV 772
V + S V
Sbjct: 162 RVSQESEMEVV 172
Score = 80.0 bits (197), Expect = 2e-17
Identities = 29/182 (15%), Positives = 54/182 (29%), Gaps = 31/182 (17%)
Query: 414 GDKVRLECVAF--GYPVPSYNWTRRGSPL-----------PRNAYFENFNRILTIPNVKV 460
G + L F + W R + + A+ N L I N+
Sbjct: 11 GHGINLNIPNFQMTDDIDEVRWERGSTLVAEFKRKMKPFLKSGAFEILANGDLKIKNLTR 70
Query: 461 EDQGEYICRASNDRSALESSVTISIQAEPNFTIPLTDKHMDNQADLTWTCEAFGVPDVTY 520
+D G Y + + + ++ + P+ ++ T TCE DV
Sbjct: 71 DDSGTYNVTVYSTNGTRILNKALDLRILEMVSKPMIYW---ECSNATLTCEVLEGTDVEL 127
Query: 521 SWFRNGELLNSETLPLEDQDRYFIQDNVLTIRYLNPERDPAMYQCRAKNQLKTRYSSAQL 580
++ E L S T+ Y A ++C+A N++ +
Sbjct: 128 KLYQGKEHLRS--------------LRQKTMSY-QWTNLRAPFKCKAVNRVSQESEMEVV 172
Query: 581 RV 582
Sbjct: 173 NC 174
Score = 73.8 bits (181), Expect = 3e-15
Identities = 25/164 (15%), Positives = 44/164 (26%), Gaps = 21/164 (12%)
Query: 505 DLTWTCEAFGVPDVTYS--WFRNGELL---NSETLPLEDQDRYFIQDN-VLTIRYLNPER 558
+ F + D W R L+ + P + I N L I+ L +
Sbjct: 13 GINLNIPNFQMTDDIDEVRWERGSTLVAEFKRKMKPFLKSGAFEILANGDLKIKNLTRD- 71
Query: 559 DPAMYQCRAKNQLKTRYSSAQLRVLTLKPSFKKRPLESETYAGEGGNVTIFCNPEAAPKP 618
D Y + TR + L + + E N T+ C
Sbjct: 72 DSGTYNVTVYSTNGTRILNKALDLRI------LEMVSKPMIYWECSNATLTCEVLEGTDV 125
Query: 619 KFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTATN 662
+ + + S + +S + + C A N
Sbjct: 126 ELKLYQGKEHLRSLRQ--------KTMSYQWTNLRAPFKCKAVN 161
Score = 68.1 bits (166), Expect = 3e-13
Identities = 21/144 (14%), Positives = 35/144 (24%), Gaps = 21/144 (14%)
Query: 341 EDKRVFVSYDGALYFSALEQIDAGNYSCNVQSKVSDTGRNGPFFPLKVFPHSNFQQLKFP 400
+ + +G L L + D+G Y+ V S N L+
Sbjct: 51 KSGAFEILANGDLKIKNLTRDDSGTYNVTVYSTNGTRILNKAL------------DLRIL 98
Query: 401 NNFPKTFPEAPKAGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYFENFNRILTIPNVKV 460
K P L C + L R T+
Sbjct: 99 EMVSK--PMIYWECSNATLTCEVLEGTDVELKLYQGKEHLRS-------LRQKTMSYQWT 149
Query: 461 EDQGEYICRASNDRSALESSVTIS 484
+ + C+A N S ++
Sbjct: 150 NLRAPFKCKAVNRVSQESEMEVVN 173
Score = 51.1 bits (122), Expect = 2e-07
Identities = 22/173 (12%), Positives = 47/173 (27%), Gaps = 29/173 (16%)
Query: 211 DITLSC--YAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLSG-GNLIINDPRQVE 267
I L+ + W + + + L F + G+L I + + +
Sbjct: 13 GINLNIPNFQMTDDIDEVRWERGSTLVAEFKRKMKPFLKSGAFEILANGDLKIKNLTR-D 71
Query: 268 DRGSYHCKASNKFGSIISESVQLAFGFIGEFNLKRA-----PEIGNQNWGKAMFCDPPTN 322
D G+Y+ + G+ I +L+ P I + + C+
Sbjct: 72 DSGTYNVTVYSTNGTRILN---------KALDLRILEMVSKPMIYWECSNATLTCEVL-E 121
Query: 323 YPGVNYYWARDYFPNFVEEDKRVFVSYDGALYFSALEQIDAGNYSCNVQSKVS 375
V + + + S + C ++VS
Sbjct: 122 GTDVELKLYQG----------KEHLRSLRQKTMSYQWTNLRAPFKCKAVNRVS 164
Score = 46.5 bits (110), Expect = 6e-06
Identities = 23/143 (16%), Positives = 44/143 (30%), Gaps = 19/143 (13%)
Query: 696 NLQLRCSAHTEELLDVAYIWTHNGVRI-----GNMDLNELETPNINIDGGLLEITNASFA 750
NL + T+++ +V W + + I +G L I N +
Sbjct: 15 NLNIPNFQMTDDIDEV--RWERGSTLVAEFKRKMKPFLKSGAFEILANGDLK-IKNLTRD 71
Query: 751 DAGEYECVVKSTVGKISTKTTVIVEGPPGLPGGVQVVE----------VHKTSATIQWTD 800
D+G Y V ST G + + + + E + T ++
Sbjct: 72 DSGTYNVTVYSTNGTRILNKALDLRILEMVSKPMIYWECSNATLTCEVLEGTDVELKLYQ 131
Query: 801 GATNGRPITHYKI-IARTNWNST 822
G + R + + TN +
Sbjct: 132 GKEHLRSLRQKTMSYQWTNLRAP 154
Score = 39.9 bits (93), Expect = 0.001
Identities = 15/122 (12%), Positives = 35/122 (28%), Gaps = 21/122 (17%)
Query: 168 LNDDRTYQYGMDIENPD-KIPRGPYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSY 226
+D TY + + + + + ++V ++ TL+C +
Sbjct: 70 RDDSGTYN--VTVYSTNGTRILNKALDLRILEMVSKPMIYWECSNATLTCEVLEGTDVEL 127
Query: 227 EWFKEDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVEDRGSYHCKASNKFGSIISE 286
+ ++ K S ++ + R + CKA N+
Sbjct: 128 KLYQ-----------------GKEHLRSLRQKTMS-YQWTNLRAPFKCKAVNRVSQESEM 169
Query: 287 SV 288
V
Sbjct: 170 EV 171
>3kvq_A Vascular endothelial growth factor receptor 2; vegfr2,
angiogenesis, ATP-binding, developmental protein,
differentiation, glycoprotein; 2.70A {Homo sapiens}
Length = 108
Score = 85.5 bits (212), Expect = 4e-20
Identities = 26/114 (22%), Positives = 46/114 (40%), Gaps = 12/114 (10%)
Query: 579 QLRVL-TLKPSFKKRPLESETYAGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKI 637
QL VL + P+ G ++ + C P P+ +W KD + +
Sbjct: 2 QLTVLERVAPTITGNL--ENQTTSIGESIEVSCTASGNPPPQIMWFKDNETLVEDSGIVL 59
Query: 638 FE-NGNLLISPVSRDDSGIYSCTATNVHGMDESKGRLIVLHGPSYYEQLPPKIT 690
+ N NL I V ++D G+Y+C A +V G + + I+ + + T
Sbjct: 60 KDGNRNLTIRRVRKEDEGLYTCQACSVLGCAKVEAFFII--------EGAQEKT 105
Score = 81.6 bits (202), Expect = 1e-18
Identities = 22/83 (26%), Positives = 36/83 (43%), Gaps = 2/83 (2%)
Query: 412 KAGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYF--ENFNRILTIPNVKVEDQGEYICR 469
G+ + + C A G P P W + L ++ ++ NR LTI V+ ED+G Y C+
Sbjct: 23 SIGESIEVSCTASGNPPPQIMWFKDNETLVEDSGIVLKDGNRNLTIRRVRKEDEGLYTCQ 82
Query: 470 ASNDRSALESSVTISIQAEPNFT 492
A + + I+ T
Sbjct: 83 ACSVLGCAKVEAFFIIEGAQEKT 105
Score = 74.7 bits (184), Expect = 3e-16
Identities = 24/104 (23%), Positives = 41/104 (39%), Gaps = 10/104 (9%)
Query: 481 VTISIQAEPNFTIPLTDKHMDNQADLTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQD 540
+T+ + P T L ++ + +C A G P WF++ E L +
Sbjct: 3 LTVLERVAPTITGNLENQTTSIGESIEVSCTASGNPPPQIMWFKDNE-------TLVEDS 55
Query: 541 RYFIQDNV--LTIRYLNPERDPAMYQCRAKNQLKTRYSSAQLRV 582
++D LTIR + E D +Y C+A + L A +
Sbjct: 56 GIVLKDGNRNLTIRRVRKE-DEGLYTCQACSVLGCAKVEAFFII 98
Score = 67.0 bits (164), Expect = 1e-13
Identities = 23/97 (23%), Positives = 32/97 (32%), Gaps = 14/97 (14%)
Query: 190 PYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDK 249
P + + I +SC A G P P WFK++ + S
Sbjct: 11 PTITGNLENQTTSIG-----ESIEVSCTASGNPPPQIMWFKDN--------ETLVEDSGI 57
Query: 250 RFTLSGGNLIINDPRQVEDRGSYHCKASNKFGSIISE 286
NL I + ED G Y C+A + G E
Sbjct: 58 VLKDGNRNLTIRRV-RKEDEGLYTCQACSVLGCAKVE 93
Score = 60.0 bits (146), Expect = 4e-11
Identities = 20/105 (19%), Positives = 37/105 (35%), Gaps = 18/105 (17%)
Query: 683 EQLPPKI-------TIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNI 735
E++ P I T + ++++ C+A + +W + + +E I
Sbjct: 7 ERVAPTITGNLENQTTSIGESIEVSCTASGNPPPQI--MWFKDNETL-------VEDSGI 57
Query: 736 NI--DGGLLEITNASFADAGEYECVVKSTVGKISTKTTVIVEGPP 778
+ L I D G Y C S +G + I+EG
Sbjct: 58 VLKDGNRNLTIRRVRKEDEGLYTCQACSVLGCAKVEAFFIIEGAQ 102
>3l5i_A Interleukin-6 receptor subunit beta; cytokine receptor, fibronectin
type III domain, alternative cell membrane, disulfide
bond; 1.90A {Homo sapiens} PDB: 3l5j_A
Length = 290
Score = 90.6 bits (225), Expect = 6e-20
Identities = 38/221 (17%), Positives = 58/221 (26%), Gaps = 35/221 (15%)
Query: 767 STKTTVIVEGPPGLPGGVQVVEVHKTSATIQWT--DGATNGRPITHYKIIARTNWNSTWF 824
+ T + P ++WT + I + +++ T +
Sbjct: 90 AVLTIPACDFQATHPVMDLKAFPKDNMLWVEWTTPRESVKK-YILEWCVLSDKAPCITDW 148
Query: 825 NVSEHVIGKEVDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPSPQYNTPADK 884
+ G Y N L Y V G G Y
Sbjct: 149 ---QQEDGTVHRTYL------RGN-LAESKCYLITVTPVYADGPG-SPESIKAY-LKQAP 196
Query: 885 PYQAPSRIGGGGGKIGDLSISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETLKEYGNV 944
P + P+ GK + + W+ LP + QN Y IF+R E
Sbjct: 197 PSKGPTVRTKKVGK-NEAVLEWDQLPVDVQNGFIRNYTIFYRTIIGNETA---------- 245
Query: 945 GIAVVRIPSEFY-------YTEYEVKVQAINDVGPGPESEV 978
V Y T Y V++ A D G E
Sbjct: 246 --VNVDSSHTEYTLSSLTSDTLYMVRMAAYTDEGGKDGPEF 284
Score = 85.2 bits (211), Expect = 3e-18
Identities = 28/207 (13%), Positives = 49/207 (23%), Gaps = 28/207 (13%)
Query: 776 GPPGLPGGVQVVEVHK-TSATIQW--TDGATNGRPITHYKIIARTNWNSTWFNVSEHVIG 832
P + + + W I Y + T W S N + +
Sbjct: 6 KAPSFWYKIDPSHTQGYRTVQLVWKTLPPFEANGKILDY-EVTLTRWKSHLQNYTVN--- 61
Query: 833 KEVDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPSPQYNTPADKPYQAPSRI 892
A+ V + Y + N +G S + D P
Sbjct: 62 -----------ATKLTVNLTNDRYLATLTVRNLVG---KSDAAVLTIPACDFQATHPVMD 107
Query: 893 GGGGGKIGDLSISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETLKEYGNVGIAVVRIP 952
K L + W Y + W +D T + + + +
Sbjct: 108 LKAFPKDNMLWVEWTT-----PRESVKKYILEWCVLSDKA-PCITDWQQEDGTVHRTYLR 161
Query: 953 SEFY-YTEYEVKVQAINDVGPGPESEV 978
Y + V + GPG +
Sbjct: 162 GNLAESKCYLITVTPVYADGPGSPESI 188
Score = 56.7 bits (137), Expect = 9e-09
Identities = 25/134 (18%), Positives = 46/134 (34%), Gaps = 19/134 (14%)
Query: 754 EYECVV----KSTVGKISTKTTVIVEGPPGLPGGVQVVEVHKTSATIQWTDGATNGR--P 807
Y V G + + + PP V+ +V K A ++W + +
Sbjct: 169 CYLITVTPVYADGPGSPESIKAYLKQAPPSKGPTVRTKKVGKNEAVLEWDQLPVDVQNGF 228
Query: 808 ITHYKIIARTNWNSTWFNVSEHVIGKEVDRYTGRKEASIENVLVPWSTYEFKVIAGNELG 867
I +Y I R V+ VD + E ++ + L + Y ++ A + G
Sbjct: 229 IRNYTIFYR-TIIGNETAVN-------VD--SSHTEYTLSS-LTSDTLYMVRMAAYTDEG 277
Query: 868 YGEPSSPSPQYNTP 881
+ P + TP
Sbjct: 278 GKD--GPEFTFTTP 289
>2ic2_A CG9211-PA, GH03927P; IHOG, hedgehog, fibronectin type III, protein
binding; HET: MSE; 1.30A {Drosophila melanogaster} SCOP:
b.1.2.1
Length = 115
Score = 85.4 bits (211), Expect = 6e-20
Identities = 22/110 (20%), Positives = 41/110 (37%), Gaps = 5/110 (4%)
Query: 776 GPPGLPGGVQVVEVHKTSATIQWTDGATNGRPITHYKIIAR-TNWNSTWFNVSEHV---I 831
G P V + S ++W +G PI +K+ R W ++++
Sbjct: 1 GSTYPPTPPNVTRLSDESVMLRWMVPRNDGLPIVIFKVQYRMVGKRKNWQTTNDNIPYGK 60
Query: 832 GKEVDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPSPQYNTP 881
K AS+ + L P TY F+++A + S+ S ++
Sbjct: 61 PKWNSELGKSFTASVTD-LKPQHTYRFRILAVYSNNDNKESNTSAKFYLQ 109
Score = 39.1 bits (91), Expect = 8e-04
Identities = 10/83 (12%), Positives = 21/83 (25%), Gaps = 11/83 (13%)
Query: 904 ISWEPLPREKQNAPNIYYKIFWRKKND-TEFQSETLKEYGNVGIAVVRIPSEFYY----- 957
+ W P + +K+ +R +Q+ + F
Sbjct: 21 LRWMV--PRNDGLPIVIFKVQYRMVGKRKNWQTTNDNIPYGKPKWNSELGKSFTASVTDL 78
Query: 958 ---TEYEVKVQAINDVGPGPESE 977
Y ++ A+ ES
Sbjct: 79 KPQHTYRFRILAVYSNNDNKESN 101
>2dm2_A Palladin; beta-sandwich, KIAA0992, actin-associated scaffold,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 110
Score = 84.7 bits (210), Expect = 9e-20
Identities = 29/95 (30%), Positives = 37/95 (38%), Gaps = 7/95 (7%)
Query: 586 KPSFKKRPLESETYAGEGGNVTIFCNPEAAPKPKFVWKKDGN-IIGSGGRRKIFENGN-- 642
P F+ + EG VT C PKPK W KDG I I + +
Sbjct: 8 APFFEMKL--KHYKIFEGMPVTFTCRVAGNPKPKIYWFKDGKQISPKSDHYTIQRDLDGT 65
Query: 643 --LLISPVSRDDSGIYSCTATNVHGMDESKGRLIV 675
L + + DD G Y+ A N G GRL+V
Sbjct: 66 CSLHTTASTLDDDGNYTIMAANPQGRISCTGRLMV 100
Score = 65.1 bits (159), Expect = 6e-13
Identities = 22/105 (20%), Positives = 37/105 (35%), Gaps = 12/105 (11%)
Query: 489 PNFTIPLTDKHMDNQADLTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQDNV 548
P F + L + +T+TC G P WF++G+ ++ D Y IQ ++
Sbjct: 9 PFFEMKLKHYKIFEGMPVTFTCRVAGNPKPKIYWFKDGKQIS------PKSDHYTIQRDL 62
Query: 549 -----LTIRYLNPERDPAMYQCRAKNQLKTRYSSAQLRVLTLKPS 588
L + D Y A N + +L V +
Sbjct: 63 DGTCSLHTTASTLD-DDGNYTIMAANPQGRISCTGRLMVQAVNSG 106
Score = 64.7 bits (158), Expect = 7e-13
Identities = 16/83 (19%), Positives = 29/83 (34%), Gaps = 6/83 (7%)
Query: 414 GDKVRLECVAFGYPVPSYNWTRRGSPLPRNA------YFENFNRILTIPNVKVEDQGEYI 467
G V C G P P W + G + + + L ++D G Y
Sbjct: 23 GMPVTFTCRVAGNPKPKIYWFKDGKQISPKSDHYTIQRDLDGTCSLHTTASTLDDDGNYT 82
Query: 468 CRASNDRSALESSVTISIQAEPN 490
A+N + + + + +QA +
Sbjct: 83 IMAANPQGRISCTGRLMVQAVNS 105
Score = 57.4 bits (139), Expect = 3e-10
Identities = 22/104 (21%), Positives = 32/104 (30%), Gaps = 18/104 (17%)
Query: 187 PRGPYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPL 246
P+F + +T +C G P P WFK+ I P
Sbjct: 6 SGAPFFEMKLKHYKIFEGM-----PVTFTCRVAGNPKPKIYWFKDG--------KQISPK 52
Query: 247 SDKRFTLSGGN----LIINDPRQVEDRGSYHCKASNKFGSIISE 286
SD + L ++D G+Y A+N G I
Sbjct: 53 SDHYTIQRDLDGTCSLHTTAS-TLDDDGNYTIMAANPQGRISCT 95
Score = 53.9 bits (130), Expect = 4e-09
Identities = 13/69 (18%), Positives = 25/69 (36%), Gaps = 1/69 (1%)
Query: 714 IWTHNGVRIGNMDLNELETPNINIDGGLLEITNASFADAGEYECVVKSTVGKISTKTTVI 773
W +G +I + + L T ++ D G Y + + G+IS ++
Sbjct: 41 YWFKDGKQI-SPKSDHYTIQRDLDGTCSLHTTASTLDDDGNYTIMAANPQGRISCTGRLM 99
Query: 774 VEGPPGLPG 782
V+ P
Sbjct: 100 VQAVNSGPS 108
>1x5y_A Myosin binding protein C, fast-type; fast MYBP-C, fibronectin type
III domain containing protein, cytoskeleton, muscle
contraction; NMR {Mus musculus} SCOP: b.1.2.1
Length = 111
Score = 84.7 bits (210), Expect = 9e-20
Identities = 20/106 (18%), Positives = 41/106 (38%), Gaps = 10/106 (9%)
Query: 771 TVIVEGPPGLPGGVQVVEVHKTSATIQWTDGATNGR-PITHYKIIARTNWNSTWFNVSEH 829
+ GP P + V +V T+ T++W G I Y + + W ++
Sbjct: 2 SSGSSGPTSAPQHLTVEDVTDTTTTLKWRPPDRIGAGGIDGYLVEYCLEGSEEWVPANKE 61
Query: 830 VIGKEVDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPS 875
+ + +T +++ L + F+V+ N G EP++
Sbjct: 62 PVERC--GFT------VKD-LPTGARILFRVVGVNIAGRSEPATLL 98
Score = 34.6 bits (80), Expect = 0.033
Identities = 8/84 (9%), Positives = 20/84 (23%), Gaps = 18/84 (21%)
Query: 902 LSISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETLKEYGNVGIAVVRIPSEFY----- 956
++ W P P Y + + + E+ + +
Sbjct: 25 TTLKWRP-PDRIGAGGIDGYLVEYCLEGSEEWVP----------ANKEPVERCGFTVKDL 73
Query: 957 --YTEYEVKVQAINDVGPGPESEV 978
+V +N G + +
Sbjct: 74 PTGARILFRVVGVNIAGRSEPATL 97
>1g1c_A Immunoglobulin-like domain I1 from titin; immunoglobulin domain,
beta-sandwhich, I-SET, structural protein; 2.10A {Homo
sapiens} SCOP: b.1.1.4
Length = 99
Score = 83.9 bits (208), Expect = 1e-19
Identities = 23/93 (24%), Positives = 38/93 (40%), Gaps = 6/93 (6%)
Query: 587 PSFKKRPLESETYAGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGN---- 642
P + ++S+T G+G + P P+ W K+G I R + +
Sbjct: 6 PKIFE-RIQSQT-VGQGSDAHFRVRVVGKPDPECEWYKNGVKIERSDRIYWYWPEDNVCE 63
Query: 643 LLISPVSRDDSGIYSCTATNVHGMDESKGRLIV 675
L+I V+ +DS A N+ G S L+V
Sbjct: 64 LVIRDVTGEDSASIMVKAINIAGETSSHAFLLV 96
Score = 65.8 bits (161), Expect = 3e-13
Identities = 23/103 (22%), Positives = 36/103 (34%), Gaps = 12/103 (11%)
Query: 484 SIQAEPNFTIPLTDKHMDNQADLTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYF 543
S++A P + + + +D + G PD W++NG + Y+
Sbjct: 2 SMEA-PKIFERIQSQTVGQGSDAHFRVRVVGKPDPECEWYKNGVKIE------RSDRIYW 54
Query: 544 IQDN----VLTIRYLNPERDPAMYQCRAKNQLKTRYSSAQLRV 582
L IR + E D A +A N S A L V
Sbjct: 55 YWPEDNVCELVIRDVTGE-DSASIMVKAINIAGETSSHAFLLV 96
Score = 65.0 bits (159), Expect = 4e-13
Identities = 18/80 (22%), Positives = 28/80 (35%), Gaps = 5/80 (6%)
Query: 414 GDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYF-----ENFNRILTIPNVKVEDQGEYIC 468
G G P P W + G + R+ E+ L I +V ED +
Sbjct: 20 GSDAHFRVRVVGKPDPECEWYKNGVKIERSDRIYWYWPEDNVCELVIRDVTGEDSASIMV 79
Query: 469 RASNDRSALESSVTISIQAE 488
+A N S + +QA+
Sbjct: 80 KAINIAGETSSHAFLLVQAK 99
Score = 61.5 bits (150), Expect = 8e-12
Identities = 21/100 (21%), Positives = 28/100 (28%), Gaps = 17/100 (17%)
Query: 190 PYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDK 249
P ++ D G P+P EW+K I+
Sbjct: 6 PKIFERIQSQTVGQGS-----DAHFRVRVVGKPDPECEWYKNG--------VKIERSDRI 52
Query: 250 RFTLSGGN---LIINDPRQVEDRGSYHCKASNKFGSIISE 286
+ N L+I D ED S KA N G S
Sbjct: 53 YWYWPEDNVCELVIRDV-TGEDSASIMVKAINIAGETSSH 91
Score = 50.0 bits (120), Expect = 1e-07
Identities = 13/65 (20%), Positives = 25/65 (38%), Gaps = 6/65 (9%)
Query: 714 IWTHNGVRIGNMDLNELETPNINIDGGL--LEITNASFADAGEYECVVKSTVGKISTKTT 771
W NGV+I D P + + L I + + D+ + G+ S+
Sbjct: 38 EWYKNGVKIERSDRIYWYWP----EDNVCELVIRDVTGEDSASIMVKAINIAGETSSHAF 93
Query: 772 VIVEG 776
++V+
Sbjct: 94 LLVQA 98
>1wit_A Twitchin 18TH IGSF module; immunoglobulin superfamily, I SET,
muscle protein; NMR {Caenorhabditis elegans} SCOP:
b.1.1.4 PDB: 1wiu_A
Length = 93
Score = 83.5 bits (207), Expect = 1e-19
Identities = 19/94 (20%), Positives = 28/94 (29%), Gaps = 5/94 (5%)
Query: 585 LKPSFKKRPLESETYAGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGN-- 642
LKP + G + + AP P W + + +
Sbjct: 1 LKPKILTAS--RKIKIKAGFTHNLEVDFIGAPDPTATWTVGDSGAALAPELLVDAKSSTT 58
Query: 643 -LLISPVSRDDSGIYSCTATNVHGMDESKGRLIV 675
+ R DSG Y N G DE+ +IV
Sbjct: 59 SIFFPSAKRADSGNYKLKVKNELGEDEAIFEVIV 92
Score = 71.2 bits (175), Expect = 3e-15
Identities = 19/79 (24%), Positives = 29/79 (36%), Gaps = 4/79 (5%)
Query: 412 KAGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYF----ENFNRILTIPNVKVEDQGEYI 467
KAG LE G P P+ WT S ++ + P+ K D G Y
Sbjct: 15 KAGFTHNLEVDFIGAPDPTATWTVGDSGAALAPELLVDAKSSTTSIFFPSAKRADSGNYK 74
Query: 468 CRASNDRSALESSVTISIQ 486
+ N+ E+ + +Q
Sbjct: 75 LKVKNELGEDEAIFEVIVQ 93
Score = 51.6 bits (124), Expect = 2e-08
Identities = 13/95 (13%), Positives = 23/95 (24%), Gaps = 16/95 (16%)
Query: 190 PYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDK 249
P + + L G P+P+ W D + +
Sbjct: 3 PKILTASRKIKIKAGF-----THNLEVDFIGAPDPTATWTVGD--------SGAALAPEL 49
Query: 250 RFTLSGGN--LIINDPRQVEDRGSYHCKASNKFGS 282
+ + D G+Y K N+ G
Sbjct: 50 LVDAKSSTTSIFFPSA-KRADSGNYKLKVKNELGE 83
Score = 50.8 bits (122), Expect = 5e-08
Identities = 12/98 (12%), Positives = 23/98 (23%), Gaps = 12/98 (12%)
Query: 489 PNFTIPLTDKHMDNQADLTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQDN- 547
P + + G PD T +W +
Sbjct: 3 PKILTASRKIKIKAGFTHNLEVDFIGAPDPTATWTVGDS-------GAALAPELLVDAKS 55
Query: 548 ---VLTIRYLNPERDPAMYQCRAKNQLKTRYSSAQLRV 582
+ D Y+ + KN+L + ++ V
Sbjct: 56 STTSIFFPSAKRA-DSGNYKLKVKNELGEDEAIFEVIV 92
Score = 50.0 bits (120), Expect = 9e-08
Identities = 21/102 (20%), Positives = 31/102 (30%), Gaps = 20/102 (19%)
Query: 685 LPPKI-------TIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINI 737
L PKI I A L WT P + +
Sbjct: 1 LKPKILTASRKIKIKAGFTHNLEVDFIGAPDPTA--TWTVGDSGA-------ALAPELLV 51
Query: 738 ----DGGLLEITNASFADAGEYECVVKSTVGKISTKTTVIVE 775
+ +A AD+G Y+ VK+ +G+ VIV+
Sbjct: 52 DAKSSTTSIFFPSAKRADSGNYKLKVKNELGEDEAIFEVIVQ 93
>3qp3_A Titin; I-SET IG-like, sarcomere, M-BAND, transferase; 2.00A {Homo
sapiens}
Length = 103
Score = 83.5 bits (207), Expect = 2e-19
Identities = 22/99 (22%), Positives = 29/99 (29%), Gaps = 6/99 (6%)
Query: 586 KPSFKKRPLESETYAGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGN--- 642
P + S G N N ++ P + W +G + +
Sbjct: 8 APRITL-RMRSHR-VPCGQNTRFILNVQSKPTAEVKWYHNGVELQESSKIHYTNTSGVLT 65
Query: 643 LLISPVSRDDSGIYSCTATNVHGMDESKGRLIVLHGPSY 681
L I DDSG Y TN G L V G Y
Sbjct: 66 LEILDCHTDDSGTYRAVCTNYKGEASDYATLDV-TGGDY 103
Score = 69.2 bits (170), Expect = 2e-14
Identities = 18/99 (18%), Positives = 27/99 (27%), Gaps = 15/99 (15%)
Query: 404 PKTFPEAPK-----------AGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYFENFNR- 451
P T AP+ G R P W G L ++ N
Sbjct: 2 PFTLDHAPRITLRMRSHRVPCGQNTRFILNVQSKPTAEVKWYHNGVELQESSKIHYTNTS 61
Query: 452 ---ILTIPNVKVEDQGEYICRASNDRSALESSVTISIQA 487
L I + +D G Y +N + T+ +
Sbjct: 62 GVLTLEILDCHTDDSGTYRAVCTNYKGEASDYATLDVTG 100
Score = 65.0 bits (159), Expect = 5e-13
Identities = 15/104 (14%), Positives = 30/104 (28%), Gaps = 12/104 (11%)
Query: 483 ISIQAEPNFTIPLTDKHMDNQADLTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRY 542
++ P T+ + + + + P W+ NG L++ +
Sbjct: 3 FTLDHAPRITLRMRSHRVPCGQNTRFILNVQSKPTAEVKWYHNGV-------ELQESSKI 55
Query: 543 FIQDN----VLTIRYLNPERDPAMYQCRAKNQLKTRYSSAQLRV 582
+ L I + + D Y+ N A L V
Sbjct: 56 HYTNTSGVLTLEILDCHTD-DSGTYRAVCTNYKGEASDYATLDV 98
Score = 59.6 bits (145), Expect = 5e-11
Identities = 15/106 (14%), Positives = 26/106 (24%), Gaps = 16/106 (15%)
Query: 183 PDKIPRGPYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANL 242
P + P + + P +W+
Sbjct: 2 PFTLDHAPRITLRMRSHRVPCG-----QNTRFILNVQSKPTAEVKWYHNG--------VE 48
Query: 243 IDPLSDKRFTLSGGN--LIINDPRQVEDRGSYHCKASNKFGSIISE 286
+ S +T + G L I D +D G+Y +N G
Sbjct: 49 LQESSKIHYTNTSGVLTLEILDCH-TDDSGTYRAVCTNYKGEASDY 93
Score = 54.6 bits (132), Expect = 2e-09
Identities = 25/111 (22%), Positives = 44/111 (39%), Gaps = 14/111 (12%)
Query: 671 GRLIVLHGPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNEL 730
G + H P ++ + +N + + ++ +V W HNGV +
Sbjct: 1 GPFTLDHAPRITLRMRS-HRVPCGQNTRFILNVQSKPTAEV--KWYHNGVELQ------- 50
Query: 731 ETPNINI--DGGL--LEITNASFADAGEYECVVKSTVGKISTKTTVIVEGP 777
E+ I+ G+ LEI + D+G Y V + G+ S T+ V G
Sbjct: 51 ESSKIHYTNTSGVLTLEILDCHTDDSGTYRAVCTNYKGEASDYATLDVTGG 101
>3bp6_B Programmed cell death 1 ligand 2; PD-1, PD-L2, complex,
costimulation, glycoprotein, immunoglo domain, membrane,
transmembrane, receptor; 1.60A {Mus musculus} PDB:
3bp5_B 3rnq_B 3bov_A 3rnk_B
Length = 202
Score = 87.0 bits (215), Expect = 2e-19
Identities = 35/192 (18%), Positives = 60/192 (31%), Gaps = 20/192 (10%)
Query: 414 GDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYFENFNRI-------------LTIPNVKV 460
G V LEC R N R IP+V+V
Sbjct: 17 GSSVSLECDFDRRECTELEGIRASLQKVENDTSLQSERATLLEEQLPLGKALFHIPSVQV 76
Query: 461 EDQGEYICRASNDRSALESSVTISIQAEPNFTIPLTDKHMDNQADLTWTCEAFGVPDVTY 520
D G+Y C + +T+ ++A I + ++ TC+A G P
Sbjct: 77 RDSGQYRCLVICGAAWDYKYLTVKVKASY-MRIDTRILEVPGTGEVQLTCQARGYPLAEV 135
Query: 521 SWFRNGELLNSETLPLEDQDRYFIQDNVLTIRYLNPERDPAMYQCRAKNQLKTRYSSAQL 580
SW + + T + + + +VL ++ + + C N +SA +
Sbjct: 136 SWQNVS--VPANTSHIRTPEGLYQVTSVLRLK----PQPSRNFSCMFWNAHMKELTSAII 189
Query: 581 RVLTLKPSFKKR 592
L+ R
Sbjct: 190 DPLSRMEPKVPR 201
Score = 69.3 bits (169), Expect = 2e-13
Identities = 24/191 (12%), Positives = 55/191 (28%), Gaps = 30/191 (15%)
Query: 321 TNYPGVNYYWARDYFPNFVEE----DKRVFVSYDG------ALYFSALEQIDAGNYSCNV 370
R + +R + + + +++ D+G Y C V
Sbjct: 27 DRRECTELEGIRASLQKVENDTSLQSERATLLEEQLPLGKALFHIPSVQVRDSGQYRCLV 86
Query: 371 QSKVSDTGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPEAPKA--GDKVRLECVAFGYPV 428
+ +K ++ + + +V+L C A GYP+
Sbjct: 87 ICGA--------------AWDYKYLTVKVKASYMRIDTRILEVPGTGEVQLTCQARGYPL 132
Query: 429 PSYNWTRRGSPLPRNAYFENFN---RILTIPNVKVEDQGEYICRASNDRSALESSVTISI 485
+W P ++ ++ ++ +K + + C N +S I
Sbjct: 133 AEVSWQNVSVPAN-TSHIRTPEGLYQVTSVLRLKPQPSRNFSCMFWNAHMKELTSAIIDP 191
Query: 486 QAEPNFTIPLT 496
+ +P T
Sbjct: 192 LSRMEPKVPRT 202
Score = 68.9 bits (168), Expect = 2e-13
Identities = 30/198 (15%), Positives = 55/198 (27%), Gaps = 35/198 (17%)
Query: 600 AGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSG------GRRKIFE------NGNLLISP 647
G +V++ C+ + + + R + E I
Sbjct: 14 VDVGSSVSLECDFDRRECTELEGIRASLQKVENDTSLQSERATLLEEQLPLGKALFHIPS 73
Query: 648 VSRDDSGIYSCTATNVHGMDESKGRLIVLHGPSYYEQLPPKITIAAHRN-LQLRCSAH-- 704
V DSG Y C D + + + Y ++ +I +QL C A
Sbjct: 74 VQVRDSGQYRCLVICGAAWDYKY---LTVKVKASYMRIDTRILEVPGTGEVQLTCQARGY 130
Query: 705 -TEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEIT---NASFADAGEYECVVK 760
E+ W + V T +I GL ++T + + C+
Sbjct: 131 PLAEV-----SWQNVSV--------PANTSHIRTPEGLYQVTSVLRLKPQPSRNFSCMFW 177
Query: 761 STVGKISTKTTVIVEGPP 778
+ K T +
Sbjct: 178 NAHMKELTSAIIDPLSRM 195
Score = 68.1 bits (166), Expect = 5e-13
Identities = 21/180 (11%), Positives = 45/180 (25%), Gaps = 16/180 (8%)
Query: 505 DLTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQDNV------LTIRYLNPER 558
++ C+ R L+ + +++ + I +
Sbjct: 19 SVSLECDFDRRECTELEGIRASLQKVENDTSLQSERATLLEEQLPLGKALFHIPSVQVR- 77
Query: 559 DPAMYQCRAKNQLKTRYSSAQLRVLTLKPSFKKRPLESETYAGEGGNVTIFCNPEAAPKP 618
D Y+C Y ++V R G V + C P
Sbjct: 78 DSGQYRCLVICGAAWDYKYLTVKVKASYM----RIDTRILEVPGTGEVQLTCQARGYPLA 133
Query: 619 KFVWKKDGNIIGSGGRRKIFENGNLLIS---PVSRDDSGIYSCTATNVHGMDESKGRLIV 675
+ W+ + G ++ + S +SC N H + + +
Sbjct: 134 EVSWQNVSVPANT--SHIRTPEGLYQVTSVLRLKPQPSRNFSCMFWNAHMKELTSAIIDP 191
Score = 51.6 bits (123), Expect = 2e-07
Identities = 28/190 (14%), Positives = 51/190 (26%), Gaps = 23/190 (12%)
Query: 211 DITLSCYAGGYPNPSYEWFK---EDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVE 267
++L C E + + D + + L +++ L I QV
Sbjct: 19 SVSLECDFDRRECTELEGIRASLQKVENDTSLQSERATLLEEQLPLGKALFHIPSV-QVR 77
Query: 268 DRGSYHCKASNKFGSIISESVQLAFGFIGEFNLKRAPEIGNQNWGKAMFCDPPTNYPGVN 327
D G Y C + + + R E + C YP
Sbjct: 78 DSGQYRCLVICGAAW-DYKYLTVKVKASYMRIDTRILE-VPGTGEVQLTCQ-ARGYPLAE 134
Query: 328 YYWARDYFPNFVEEDKRVFVSYDGALYFSA---LEQIDAGNYSCNVQSK---------VS 375
W P + + +G ++ L+ + N+SC + +
Sbjct: 135 VSWQNVSVPA----NTSHIRTPEGLYQVTSVLRLKPQPSRNFSCMFWNAHMKELTSAIID 190
Query: 376 DTGRNGPFFP 385
R P P
Sbjct: 191 PLSRMEPKVP 200
Score = 45.0 bits (106), Expect = 4e-05
Identities = 10/85 (11%), Positives = 28/85 (32%), Gaps = 21/85 (24%)
Query: 210 NDITLSCYAGGYPNPSYEWFK------EDYVQDRLVANLIDPLSDKRFTLSGGNLIINDP 263
++ L+C A GYP W +++ + + ++ L +
Sbjct: 119 GEVQLTCQARGYPLAEVSWQNVSVPANTSHIRT----------PEGLYQVT-SVLRLKP- 166
Query: 264 RQVEDRGSYHCKASNKFGSIISESV 288
+ ++ C N ++ ++
Sbjct: 167 ---QPSRNFSCMFWNAHMKELTSAI 188
>2fbo_J V1V2;, variable region-containing chitin-binding protein 3;
immunoglobulin, VCBP, V-type, V SET, immune system;
1.85A {Branchiostoma floridae}
Length = 250
Score = 87.7 bits (216), Expect = 2e-19
Identities = 31/200 (15%), Positives = 52/200 (26%), Gaps = 38/200 (19%)
Query: 515 VPDVTYSWFRNGELLNSETLPLEDQDRYF-------IQDNVLTIRYLNPERDPAMYQCRA 567
V Y+W G E + + L + +++P+ D Y C+
Sbjct: 51 VFKGNYNWQGEGLGFVESDSYKESFGDFLGRASVANLAAPTLRLTHVHPQ-DGGRYWCQV 109
Query: 568 KN-----QLKTRYSSAQLRVLTLKPSFKKRPLESE-TYAGEGGNVTIFCNPEAAPKPKFV 621
+ S L+V PS +E EG ++T+ C
Sbjct: 110 AQWSIRTEFGLDAKSVVLKVTGHTPSNNVHVSTAEVVQVDEGNDITMTCPCTDCANANVT 169
Query: 622 WKKDGNIIGSG------------------------GRRKIFENGNLLISPVSRDDSGIYS 657
W + GR NL+I D+G
Sbjct: 170 WYTGPTFFENYETGTYQPLANKNQFGITWFSSEIAGRASFSGARNLVIRAAKITDAGRVW 229
Query: 658 CTATNVHGMDESKGRLIVLH 677
C G ++ +L
Sbjct: 230 CELATGQGELDADRSSTILK 249
Score = 79.2 bits (194), Expect = 2e-16
Identities = 34/241 (14%), Positives = 59/241 (24%), Gaps = 63/241 (26%)
Query: 595 ESETYAGEGGNVTIFCNPEAA---PKPKFVWKKDGNIIGS-------------------- 631
+E GG V + C+ + A P W K + S
Sbjct: 9 HTEVEVHAGGTVELPCSYQLANDTQPPVISWLKGASPDRSTKVFKGNYNWQGEGLGFVES 68
Query: 632 ----------GGRRKIFENGN--LLISPVSRDDSGIYSCTATNVH-----GMDESKGRLI 674
GR + L ++ V D G Y C G+D L
Sbjct: 69 DSYKESFGDFLGRASVANLAAPTLRLTHVHPQDGGRYWCQVAQWSIRTEFGLDAKSVVLK 128
Query: 675 VLHG---PSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELE 731
V + + + + ++ + C +V W N + +
Sbjct: 129 VTGHTPSNNVHVSTAEVVQVDEGNDITMTCPCTDCANANVT--WYTGPTFFENYETGTYQ 186
Query: 732 TPNINI------------------DGGLLEITNASFADAGEYECVVKSTVGKISTKTTVI 773
L I A DAG C + + G++ +
Sbjct: 187 PLANKNQFGITWFSSEIAGRASFSGARNLVIRAAKITDAGRVWCELATGQGELDADRSST 246
Query: 774 V 774
+
Sbjct: 247 I 247
Score = 77.3 bits (189), Expect = 9e-16
Identities = 35/235 (14%), Positives = 54/235 (22%), Gaps = 64/235 (27%)
Query: 412 KAGDKVRLEC---VAFGYPVPSYNWTRRGSPLPRNAYFENFNRI---------------- 452
AG V L C +A P +W + SP F+
Sbjct: 15 HAGGTVELPCSYQLANDTQPPVISWLKGASPDRSTKVFKGNYNWQGEGLGFVESDSYKES 74
Query: 453 -----------------LTIPNVKVEDQGEYICRASN---------DRSALESSVTISIQ 486
L + +V +D G Y C+ + D ++ VT
Sbjct: 75 FGDFLGRASVANLAAPTLRLTHVHPQDGGRYWCQVAQWSIRTEFGLDAKSVVLKVTGHTP 134
Query: 487 AEPNFTIPLTDKHMDNQADLTWTCEAFGVPDVTYSWFRNGELL----------------- 529
+ +D D+T TC + +W+
Sbjct: 135 SNNVHVSTAEVVQVDEGNDITMTCPCTDCANANVTWYTGPTFFENYETGTYQPLANKNQF 194
Query: 530 NSETLPLEDQDRY-FIQDNVLTIRYLNPERDPAMYQCRAKNQLKTRYSSAQLRVL 583
E R F L IR D C + +L
Sbjct: 195 GITWFSSEIAGRASFSGARNLVIRAAKIT-DAGRVWCELATGQGELDADRSSTIL 248
Score = 70.7 bits (172), Expect = 2e-13
Identities = 36/215 (16%), Positives = 58/215 (26%), Gaps = 46/215 (21%)
Query: 311 WGKAMFCDPPTNYPGVNYYWARDYFPNFVEEDK-----------RVFVSYDGALYFSALE 359
W K D T NY W + + V L + +
Sbjct: 39 WLKGASPDRSTKVFKGNYNWQGEGLGFVESDSYKESFGDFLGRASVANLAAPTLRLTHVH 98
Query: 360 QIDAGNYSCNV--QSKVSDTGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPEA--PKAGD 415
D G Y C V S ++ G + LKV H+ NN + E G+
Sbjct: 99 PQDGGRYWCQVAQWSIRTEFGLDAKSVVLKVTGHTP------SNNVHVSTAEVVQVDEGN 152
Query: 416 KVRLECVAFGYPVPSYNWTRRGSPLP---RNAYFENFNRI-------------------- 452
+ + C + W + Y N+
Sbjct: 153 DITMTCPCTDCANANVTWYTGPTFFENYETGTYQPLANKNQFGITWFSSEIAGRASFSGA 212
Query: 453 --LTIPNVKVEDQGEYICRASNDRSALESSVTISI 485
L I K+ D G C + + L++ + +I
Sbjct: 213 RNLVIRAAKITDAGRVWCELATGQGELDADRSSTI 247
Score = 58.4 bits (140), Expect = 2e-09
Identities = 25/142 (17%), Positives = 44/142 (30%), Gaps = 27/142 (19%)
Query: 169 NDDRTYQYGMDIEN-----PDKIPRGPYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPN 223
++G+D ++ P + V D NDIT++C N
Sbjct: 111 QWSIRTEFGLDAKSVVLKVTGHTPSNNVHVSTAEVVQVDEG-----NDITMTCPCTDCAN 165
Query: 224 PSYEWFKEDYVQDRLVANLIDPLSDK--------------RFTLSG-GNLIINDPRQVED 268
+ W+ + PL++K R + SG NL+I + D
Sbjct: 166 ANVTWYTGPTFFENYETGTYQPLANKNQFGITWFSSEIAGRASFSGARNLVIRAAKI-TD 224
Query: 269 RGSYHCKASNKFGSIISESVQL 290
G C+ + G +
Sbjct: 225 AGRVWCELATGQGE-LDADRSS 245
Score = 52.6 bits (125), Expect = 2e-07
Identities = 26/226 (11%), Positives = 43/226 (19%), Gaps = 56/226 (24%)
Query: 210 NDITLSC---YAGGYPNPSYEWFKED------------YVQDRLVANLIDPLSDKRF--- 251
+ L C A P W K Y ++ S K
Sbjct: 18 GTVELPCSYQLANDTQPPVISWLKGASPDRSTKVFKGNYNWQGEGLGFVESDSYKESFGD 77
Query: 252 --------TLSGGNLIINDPRQVEDRGSYHCKASNKFGSIISESVQLAFGFIGEFNLKRA 303
L+ L + +D G Y C+ + + +
Sbjct: 78 FLGRASVANLAAPTLRLTHV-HPQDGGRYWCQVAQWSIRTEFGLDAKSVVLKVTGHTPSN 136
Query: 304 PEIGNQN--------------------------WGKAMFCDPPTN---YPGVNYYWARDY 334
+ W Y +
Sbjct: 137 NVHVSTAEVVQVDEGNDITMTCPCTDCANANVTWYTGPTFFENYETGTYQPLANKNQFGI 196
Query: 335 FPNFVEEDKRVFVSYDGALYFSALEQIDAGNYSCNVQSKVSDTGRN 380
E R S L A + DAG C + + + +
Sbjct: 197 TWFSSEIAGRASFSGARNLVIRAAKITDAGRVWCELATGQGELDAD 242
Score = 38.4 bits (88), Expect = 0.008
Identities = 22/144 (15%), Positives = 41/144 (28%), Gaps = 36/144 (25%)
Query: 683 EQLPPKITIAAHRNLQLRCSAHT--------------------EELLDVAYIWTHNGVRI 722
++ + A ++L CS ++ Y W G+
Sbjct: 6 RTTHTEVEVHAGGTVELPCSYQLANDTQPPVISWLKGASPDRSTKVFKGNYNWQGEGLGF 65
Query: 723 GNMDLNELETPN-------INIDGGLLEITNASFADAGEYECVV-----KSTVGKISTKT 770
D + + N+ L +T+ D G Y C V ++ G +
Sbjct: 66 VESDSYKESFGDFLGRASVANLAAPTLRLTHVHPQDGGRYWCQVAQWSIRTEFGLDAKSV 125
Query: 771 TVIVEG----PPGLPGGVQVVEVH 790
+ V G +VV+V
Sbjct: 126 VLKVTGHTPSNNVHVSTAEVVQVD 149
>2cr6_A KIAA1556 protein, obscurin; IG-fold, immunoglobulin domain,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 115
Score = 83.2 bits (206), Expect = 3e-19
Identities = 23/116 (19%), Positives = 36/116 (31%), Gaps = 10/116 (8%)
Query: 576 SSAQLRVLTLKPSFKKRPLESETYAGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRR 635
S + V + + LE EG + T C A W D + +
Sbjct: 3 SGSSGLVQGRRVHIIE-DLEDVD-VQEGSSATFRCRISPANYEPVHWFLDKTPLHANELN 60
Query: 636 KIFENGN----LLISPVSRDDSGIYSCTATNVHGMDESKGRLIVLHGPSYYEQLPP 687
+I L + ++ DSG A G + L V PS + + P
Sbjct: 61 EIDAQPGGYHVLTLRQLALKDSGTIYFEA----GDQRASAALRVTEKPSVFSRSGP 112
Score = 69.3 bits (170), Expect = 3e-14
Identities = 25/121 (20%), Positives = 38/121 (31%), Gaps = 18/121 (14%)
Query: 479 SSVTISIQAE-PNFTIPLTDKHMDNQADLTWTCEAFGVPDVTYSWFRNGELLNSETLPLE 537
S + +Q + L D + + T+ C WF + PL
Sbjct: 3 SGSSGLVQGRRVHIIEDLEDVDVQEGSSATFRCRISPANYEPVHWFLDKT-------PLH 55
Query: 538 DQDRYFIQDN-----VLTIRYLNPERDPAMYQCRAKNQLKTRYSSAQLRVLTLKPSFKKR 592
+ I VLT+R L + D A +Q +SA LRV F +
Sbjct: 56 ANELNEIDAQPGGYHVLTLRQLALK-DSGTIYFEAGDQ----RASAALRVTEKPSVFSRS 110
Query: 593 P 593
Sbjct: 111 G 111
Score = 66.3 bits (162), Expect = 3e-13
Identities = 14/83 (16%), Positives = 27/83 (32%), Gaps = 9/83 (10%)
Query: 412 KAGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYF-----ENFNRILTIPNVKVEDQGEY 466
+ G C +W +PL N +LT+ + ++D G
Sbjct: 26 QEGSSATFRCRISPANYEPVHWFLDKTPLHANELNEIDAQPGGYHVLTLRQLALKDSGTI 85
Query: 467 ICRASNDRSALESSVTISIQAEP 489
A + R +S + + +P
Sbjct: 86 YFEAGDQR----ASAALRVTEKP 104
Score = 50.9 bits (122), Expect = 7e-08
Identities = 17/112 (15%), Positives = 32/112 (28%), Gaps = 12/112 (10%)
Query: 669 SKGRLIVLHGPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLN 728
S +V + + + + + RC V W + + +LN
Sbjct: 3 SGSSGLVQGRRVHIIEDLEDVDVQEGSSATFRCRISPANYEPVH--WFLDKTPLHANELN 60
Query: 729 ELETPNINIDGGL--LEITNASFADAGEYECVVKSTVGKISTKTTVIVEGPP 778
E++ GG L + + D+G G + V P
Sbjct: 61 EIDAQ----PGGYHVLTLRQLALKDSGTIYFE----AGDQRASAALRVTEKP 104
Score = 46.6 bits (111), Expect = 2e-06
Identities = 14/99 (14%), Positives = 26/99 (26%), Gaps = 17/99 (17%)
Query: 187 PRGPYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPL 246
R + I+ DV T C WF + +
Sbjct: 11 GRRVHIIEDLEDVDVQEGS-----SATFRCRISPANYEPVHWFLDK--------TPLHAN 57
Query: 247 SDKRFTLSGGN---LIINDPRQVEDRGSYHCKASNKFGS 282
G L + ++D G+ + +A ++ S
Sbjct: 58 ELNEIDAQPGGYHVLTLRQL-ALKDSGTIYFEAGDQRAS 95
>2kdg_A Myotilin; immonoglobulin domain, actin-binding, structural protein,
cell membrane, cytoplasm, cytoskeleton, disease
mutation, immunoglobulin domain; NMR {Homo sapiens}
Length = 100
Score = 82.4 bits (204), Expect = 4e-19
Identities = 23/94 (24%), Positives = 33/94 (35%), Gaps = 6/94 (6%)
Query: 587 PSFKKRPLESETYAGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGN---- 642
P F + P EG + P P W +G + S K+ +
Sbjct: 6 PRFIQVP--ENMSIDEGRFCRMDFKVSGLPAPDVSWYLNGRTVQSDDLHKMIVSEKGLHS 63
Query: 643 LLISPVSRDDSGIYSCTATNVHGMDESKGRLIVL 676
L+ V D+G Y+C A N G +L VL
Sbjct: 64 LIFEVVRASDAGAYACVAKNRAGEATFTVQLDVL 97
Score = 67.0 bits (164), Expect = 1e-13
Identities = 18/80 (22%), Positives = 28/80 (35%), Gaps = 5/80 (6%)
Query: 414 GDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYF-----ENFNRILTIPNVKVEDQGEYIC 468
G R++ G P P +W G + + E L V+ D G Y C
Sbjct: 20 GRFCRMDFKVSGLPAPDVSWYLNGRTVQSDDLHKMIVSEKGLHSLIFEVVRASDAGAYAC 79
Query: 469 RASNDRSALESSVTISIQAE 488
A N +V + + A+
Sbjct: 80 VAKNRAGEATFTVQLDVLAK 99
Score = 66.2 bits (162), Expect = 2e-13
Identities = 21/100 (21%), Positives = 34/100 (34%), Gaps = 13/100 (13%)
Query: 489 PNFTIPLTDKHMDNQADLTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQDN- 547
P F + +D + G+P SW+ NG ++ D + + +
Sbjct: 6 PRFIQVPENMSIDEGRFCRMDFKVSGLPAPDVSWYLNGR-------TVQSDDLHKMIVSE 58
Query: 548 ----VLTIRYLNPERDPAMYQCRAKNQLKTRYSSAQLRVL 583
L + D Y C AKN+ + QL VL
Sbjct: 59 KGLHSLIFEVVRAS-DAGAYACVAKNRAGEATFTVQLDVL 97
Score = 58.1 bits (141), Expect = 1e-10
Identities = 23/104 (22%), Positives = 35/104 (33%), Gaps = 18/104 (17%)
Query: 190 PYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDK 249
P FI+ P ++ D + + G P P W+ +
Sbjct: 6 PRFIQVPENMSIDEGR-----FCRMDFKVSGLPAPDVSWYLNG--------RTVQSDDLH 52
Query: 250 RFTLSGGN---LIINDPRQVEDRGSYHCKASNKFGSIISESVQL 290
+ +S LI R D G+Y C A N+ G +VQL
Sbjct: 53 KMIVSEKGLHSLIFEVVR-ASDAGAYACVAKNRAGEATF-TVQL 94
Score = 48.5 bits (116), Expect = 3e-07
Identities = 17/65 (26%), Positives = 28/65 (43%), Gaps = 6/65 (9%)
Query: 714 IWTHNGVRIGNMDLNELETPNINIDGGL--LEITNASFADAGEYECVVKSTVGKISTKTT 771
W NG + + DL+++ + GL L +DAG Y CV K+ G+ +
Sbjct: 38 SWYLNGRTVQSDDLHKMIVS----EKGLHSLIFEVVRASDAGAYACVAKNRAGEATFTVQ 93
Query: 772 VIVEG 776
+ V
Sbjct: 94 LDVLA 98
>2e3v_A Neural cell adhesion molecule 1, 140 kDa isoform; NCAM, N-CAM 1,
NCAM-120, CD56 antigen, membra protein, glycoprotein,
structural genomics, NPPSFA; HET: PGE BTB; 1.95A {Homo
sapiens}
Length = 122
Score = 82.5 bits (204), Expect = 8e-19
Identities = 36/128 (28%), Positives = 53/128 (41%), Gaps = 17/128 (13%)
Query: 775 EGPPGLPGGVQVVEVHKTSATIQWTD-GATNGRPITHYKIIART----NWNSTWFNVSEH 829
P P + VE + ++A +Q+ + AT G PI YK R W+S W++ E
Sbjct: 5 SSGPSSPS-IDQVEPYSSTAQVQFDEPEATGGVPILKYKAEWRAVGEEVWHSKWYDAKEA 63
Query: 830 VIGKEVDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPSPQYNTPADKPYQAP 889
+ +I L P +TY ++ A N G GE S+ S P +P AP
Sbjct: 64 SM---------EGIVTIVG-LKPETTYAVRLAALNGKGLGEISAASEFKTQPVREP-SAP 112
Query: 890 SRIGGGGG 897
G G
Sbjct: 113 KLEGSGPS 120
Score = 45.9 bits (109), Expect = 4e-06
Identities = 20/99 (20%), Positives = 34/99 (34%), Gaps = 3/99 (3%)
Query: 880 TPADKPYQAPSRIGGGGGKIGDLSISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETLK 939
+ + P +PS + ++ P P + YK WR + + S+
Sbjct: 3 SGSSGP-SSPSIDQVEPYS-STAQVQFDE-PEATGGVPILKYKAEWRAVGEEVWHSKWYD 59
Query: 940 EYGNVGIAVVRIPSEFYYTEYEVKVQAINDVGPGPESEV 978
+V I T Y V++ A+N G G S
Sbjct: 60 AKEASMEGIVTIVGLKPETTYAVRLAALNGKGLGEISAA 98
>1gl4_B Basement membrane-specific heparan sulfate proteoglycan core
protein; immunoglobulin-like domain, extracellular
matrix; HET: EPE; 2.0A {Mus musculus} SCOP: b.1.1.4
Length = 98
Score = 81.0 bits (200), Expect = 1e-18
Identities = 28/99 (28%), Positives = 41/99 (41%), Gaps = 4/99 (4%)
Query: 578 AQLRVLTLKPSFKKRPLESETYAGEGGNVTIFCNPEA-APKPKFVWKKDGNIIGSGGRRK 636
A L + S++ G +VT C ++ +P VW + N G R
Sbjct: 1 APLAAPSKPIMVTVEEQRSQS-VRPGADVTFICTAKSKSPAYTLVWTRLHN--GKLPSRA 57
Query: 637 IFENGNLLISPVSRDDSGIYSCTATNVHGMDESKGRLIV 675
+ NG L I V D+G Y CT +N+ MD+ L V
Sbjct: 58 MDFNGILTIRNVQPSDAGTYVCTGSNMFAMDQGTATLHV 96
Score = 79.1 bits (195), Expect = 6e-18
Identities = 26/77 (33%), Positives = 35/77 (45%), Gaps = 4/77 (5%)
Query: 412 KAGDKVRLECVAF-GYPVPSYNWTRR-GSPLPRNAYFENFNRILTIPNVKVEDQGEYICR 469
+ G V C A P + WTR LP A N ILTI NV+ D G Y+C
Sbjct: 23 RPGADVTFICTAKSKSPAYTLVWTRLHNGKLPSRAMDFN--GILTIRNVQPSDAGTYVCT 80
Query: 470 ASNDRSALESSVTISIQ 486
SN + + + T+ +Q
Sbjct: 81 GSNMFAMDQGTATLHVQ 97
Score = 61.7 bits (150), Expect = 6e-12
Identities = 21/81 (25%), Positives = 27/81 (33%), Gaps = 14/81 (17%)
Query: 211 DITLSCYA-GGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVEDR 269
D+T C A P + W + N P R G L I + Q D
Sbjct: 27 DVTFICTAKSKSPAYTLVWTRLH--------NGKLP---SRAMDFNGILTIRNV-QPSDA 74
Query: 270 GSYHCKASNKFGSIISESVQL 290
G+Y C SN F + L
Sbjct: 75 GTYVCTGSNMFAM-DQGTATL 94
Score = 52.5 bits (126), Expect = 1e-08
Identities = 16/90 (17%), Positives = 29/90 (32%), Gaps = 9/90 (10%)
Query: 686 PPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEIT 745
++ ++ C+A ++ +WT N G+L I
Sbjct: 17 QRSQSVRPGADVTFICTAKSKSPA-YTLVWTRLH--------NGKLPSRAMDFNGILTIR 67
Query: 746 NASFADAGEYECVVKSTVGKISTKTTVIVE 775
N +DAG Y C + T+ V+
Sbjct: 68 NVQPSDAGTYVCTGSNMFAMDQGTATLHVQ 97
Score = 52.1 bits (125), Expect = 2e-08
Identities = 25/104 (24%), Positives = 38/104 (36%), Gaps = 12/104 (11%)
Query: 482 TISIQAEPNFTI--PLTDKHMDNQADLTWTCEAF-GVPDVTYSWFRNGELLNSETLPLED 538
++ ++P + + AD+T+ C A P T W R + LP
Sbjct: 2 PLAAPSKPIMVTVEEQRSQSVRPGADVTFICTAKSKSPAYTLVWTRLH----NGKLP--- 54
Query: 539 QDRYFIQDNVLTIRYLNPERDPAMYQCRAKNQLKTRYSSAQLRV 582
R + +LTIR + P D Y C N +A L V
Sbjct: 55 -SRAMDFNGILTIRNVQPS-DAGTYVCTGSNMFAMDQGTATLHV 96
Score = 32.1 bits (73), Expect = 0.17
Identities = 11/52 (21%), Positives = 18/52 (34%), Gaps = 4/52 (7%)
Query: 317 CDPPTNYPGVNYYWARDYFPNFVEEDKRVFVSYDGALYFSALEQIDAGNYSC 368
C + P W R + + ++G L ++ DAG Y C
Sbjct: 32 CTAKSKSPAYTLVWTRLHNGKLPSR----AMDFNGILTIRNVQPSDAGTYVC 79
>2cqv_A MLCK, myosin light chain kinase, smooth muscle and non- muscle
isozymes; IG fold, structural genomics, NPPSFA; NMR
{Homo sapiens} SCOP: b.1.1.4
Length = 114
Score = 81.2 bits (201), Expect = 1e-18
Identities = 22/107 (20%), Positives = 35/107 (32%), Gaps = 10/107 (9%)
Query: 587 PSFKKRPLESETYAGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGN---L 643
P + P + G +V +F W K I K+ + N L
Sbjct: 8 PQIIQFP--EDQKVRAGESVELFGKVTGTQPITCTWMKFRKQIQESEHMKVENSENGSKL 65
Query: 644 LISPVSRDDSGIYSCTATNVHGMDESKGRLIVLHGPSYYEQLPPKIT 690
I ++ G Y+ N G +++ L V+ P PP T
Sbjct: 66 TILAARQEHCGCYTLLVENKLGSRQAQVNLTVVDKPD-----PPAGT 107
Score = 70.0 bits (172), Expect = 1e-14
Identities = 15/82 (18%), Positives = 30/82 (36%), Gaps = 4/82 (4%)
Query: 412 KAGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYF----ENFNRILTIPNVKVEDQGEYI 467
+AG+ V L G + W + + + + LTI + E G Y
Sbjct: 20 RAGESVELFGKVTGTQPITCTWMKFRKQIQESEHMKVENSENGSKLTILAARQEHCGCYT 79
Query: 468 CRASNDRSALESSVTISIQAEP 489
N + ++ V +++ +P
Sbjct: 80 LLVENKLGSRQAQVNLTVVDKP 101
Score = 57.7 bits (140), Expect = 2e-10
Identities = 19/104 (18%), Positives = 37/104 (35%), Gaps = 13/104 (12%)
Query: 684 QLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINI----DG 739
Q P + A +++L + + W +I E+ ++ + +G
Sbjct: 12 QFPEDQKVRAGESVELFGKVTGTQPITC--TWMKFRKQI-------QESEHMKVENSENG 62
Query: 740 GLLEITNASFADAGEYECVVKSTVGKISTKTTVIVEGPPGLPGG 783
L I A G Y +V++ +G + + V P P G
Sbjct: 63 SKLTILAARQEHCGCYTLLVENKLGSRQAQVNLTVVDKPDPPAG 106
Score = 55.4 bits (134), Expect = 2e-09
Identities = 15/102 (14%), Positives = 37/102 (36%), Gaps = 12/102 (11%)
Query: 486 QAEPNFTIPLTDKHMDNQADLTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQ 545
+ P D+ + + + G +T +W + + +++ + ++
Sbjct: 5 SSGPQIIQFPEDQKVRAGESVELFGKVTGTQPITCTWMKFRK-------QIQESEHMKVE 57
Query: 546 DN----VLTIRYLNPERDPAMYQCRAKNQLKTRYSSAQLRVL 583
++ LTI E Y +N+L +R + L V+
Sbjct: 58 NSENGSKLTILAARQE-HCGCYTLLVENKLGSRQAQVNLTVV 98
Score = 52.3 bits (126), Expect = 2e-08
Identities = 21/95 (22%), Positives = 25/95 (26%), Gaps = 16/95 (16%)
Query: 190 PYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDK 249
P I+ P D + L G + W K I
Sbjct: 8 PQIIQFPEDQKVRAG-----ESVELFGKVTGTQPITCTWMKFR--------KQIQESEHM 54
Query: 250 RFTLSGGN--LIINDPRQVEDRGSYHCKASNKFGS 282
+ S L I RQ E G Y NK GS
Sbjct: 55 KVENSENGSKLTILAARQ-EHCGCYTLLVENKLGS 88
>1x5f_A Neogenin; RGM binding, fibronectin type III domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
b.1.2.1
Length = 120
Score = 80.9 bits (200), Expect = 2e-18
Identities = 22/110 (20%), Positives = 38/110 (34%), Gaps = 10/110 (9%)
Query: 767 STKTTVIVEGPPGLPGGVQVVEVHKTSATIQWTDGATNGR-PITHYKIIARTNWNSTWFN 825
P P V V + W A++ Y + +
Sbjct: 7 GEHAPATTGPLPSAPRDVVASLVSTRFIKLTWRTPASDPHGDNLTYSVFYTKEGIARERV 66
Query: 826 VSEHVIGKEVDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPS 875
+ G+ + +I+N L+P + Y F+V+A N+ G GE S+P
Sbjct: 67 ENTSHPGEM--------QVTIQN-LMPATVYIFRVMAQNKHGSGESSAPL 107
Score = 50.1 bits (120), Expect = 1e-07
Identities = 25/115 (21%), Positives = 38/115 (33%), Gaps = 15/115 (13%)
Query: 869 GEPSSPSPQYNTPADKPYQAPSRIGGGGGKIGDLS-----ISWEPLPREKQNAPNIYYKI 923
SS T P AP + +S ++W P + N+ Y +
Sbjct: 2 SSGSSGEHAPATTGPLP-SAPRDV-----VASLVSTRFIKLTWRT-PASDPHGDNLTYSV 54
Query: 924 FWRKKNDTEFQSETLKEYGNVGIAVVRIPSEFYYTEYEVKVQAINDVGPGPESEV 978
F+ K+ + E + G V I + T Y +V A N G G S
Sbjct: 55 FYTKEGIARERVENTS---HPGEMQVTIQNLMPATVYIFRVMAQNKHGSGESSAP 106
>1x4x_A Fibronectin type-III domain containing protein 3A; FN3,
immunoglobulin-like beta- sandwich fold, KIAA0970,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
b.1.2.1
Length = 106
Score = 80.0 bits (198), Expect = 3e-18
Identities = 24/112 (21%), Positives = 35/112 (31%), Gaps = 15/112 (13%)
Query: 775 EGPPGLPGGVQVVEVHKTSATIQWTDGATNGRPITHYKIIARTNWNSTWFNVSEHVIGKE 834
P QV T A + W +NG +T Y++ +
Sbjct: 5 SSGPDQCKPPQVTCRSATCAQVNWEVPLSNGTDVTEYRLEWGGV-EGSMQIC-------- 55
Query: 835 VDRYTGRK-EASIENVLVPWSTYEFKVIAGNELGYGEPSSPSPQYNTPADKP 885
Y G I+ L P +TY +V A + +G G S TP
Sbjct: 56 ---YCGPGLSYEIKG-LSPATTYYCRVQALSVVGAGPFSEVV-ACVTPPSSG 102
Score = 43.1 bits (102), Expect = 3e-05
Identities = 20/84 (23%), Positives = 28/84 (33%), Gaps = 22/84 (26%)
Query: 902 LSISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETLKEYGNVGIAVVRIPSEFY----- 956
++WE P Y++ W + Q P Y
Sbjct: 24 AQVNWEV-PLS-NGTDVTEYRLEW-GGVEGSMQI------------CYCGPGLSYEIKGL 68
Query: 957 --YTEYEVKVQAINDVGPGPESEV 978
T Y +VQA++ VG GP SEV
Sbjct: 69 SPATTYYCRVQALSVVGAGPFSEV 92
>3irg_A Titin; IG-like, titin, OBSL1, complex, alternative splicing,
ATP-binding, calcium, calmodulin-binding,
cardiomyopathy; 1.30A {Homo sapiens} PDB: 3knb_A 3q5o_A
2wp3_T* 2wwk_T 2wwm_D 2y9r_T*
Length = 100
Score = 79.7 bits (197), Expect = 3e-18
Identities = 24/96 (25%), Positives = 39/96 (40%), Gaps = 7/96 (7%)
Query: 585 LKPSFKKRPLESETYAGEGGNVTIFCNPEAAPKPKFVWKKDGNII--GSGGRRKIFENGN 642
+ P + P S+ EG +T+ C P P+ W G I GR I +
Sbjct: 4 IPPKIEALP--SDISIDEGKVLTVACAFTGEPTPEVTWSCGGRKIHSQEQGRFHIENTDD 61
Query: 643 ---LLISPVSRDDSGIYSCTATNVHGMDESKGRLIV 675
L+I V + D G+Y+ + N G D + + +
Sbjct: 62 LTTLIIMDVQKQDGGLYTLSLGNEFGSDSATVNIHI 97
Score = 69.6 bits (171), Expect = 1e-14
Identities = 17/82 (20%), Positives = 31/82 (37%), Gaps = 6/82 (7%)
Query: 412 KAGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYF------ENFNRILTIPNVKVEDQGE 465
G + + C G P P W+ G + + L I +V+ +D G
Sbjct: 18 DEGKVLTVACAFTGEPTPEVTWSCGGRKIHSQEQGRFHIENTDDLTTLIIMDVQKQDGGL 77
Query: 466 YICRASNDRSALESSVTISIQA 487
Y N+ + ++V I I++
Sbjct: 78 YTLSLGNEFGSDSATVNIHIRS 99
Score = 61.2 bits (149), Expect = 1e-11
Identities = 28/105 (26%), Positives = 39/105 (37%), Gaps = 19/105 (18%)
Query: 190 PYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDK 249
P P+D+ D K +T++C G P P W I
Sbjct: 6 PKIEALPSDISIDEGKV-----LTVACAFTGEPTPEVTWSCGG--------RKIHSQEQG 52
Query: 250 RFTL--SGGN--LIINDPRQVEDRGSYHCKASNKFGSIISESVQL 290
RF + + LII D Q +D G Y N+FGS S +V +
Sbjct: 53 RFHIENTDDLTTLIIMDV-QKQDGGLYTLSLGNEFGS-DSATVNI 95
Score = 57.7 bits (140), Expect = 2e-10
Identities = 18/101 (17%), Positives = 38/101 (37%), Gaps = 10/101 (9%)
Query: 489 PNFTIPLTDKHMDNQADLTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQDN- 547
P +D +D LT C G P +W G + ++Q R+ I++
Sbjct: 6 PKIEALPSDISIDEGKVLTVACAFTGEPTPEVTWSCGG-----RKIHSQEQGRFHIENTD 60
Query: 548 ---VLTIRYLNPERDPAMYQCRAKNQLKTRYSSAQLRVLTL 585
L I + + D +Y N+ + ++ + + ++
Sbjct: 61 DLTTLIIMDVQKQ-DGGLYTLSLGNEFGSDSATVNIHIRSI 100
Score = 55.0 bits (133), Expect = 2e-09
Identities = 23/108 (21%), Positives = 38/108 (35%), Gaps = 18/108 (16%)
Query: 678 GPSYYEQLPPKI-------TIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNEL 730
GP +PPKI +I + L + C+ E +V W+ G +I + +
Sbjct: 1 GPG----IPPKIEALPSDISIDEGKVLTVACAFTGEPTPEV--TWSCGGRKIHSQEQGRF 54
Query: 731 ETPNINIDGGL--LEITNASFADAGEYECVVKSTVGKISTKTTVIVEG 776
I L L I + D G Y + + G S + +
Sbjct: 55 H---IENTDDLTTLIIMDVQKQDGGLYTLSLGNEFGSDSATVNIHIRS 99
Score = 27.7 bits (62), Expect = 7.0
Identities = 7/48 (14%), Positives = 18/48 (37%), Gaps = 3/48 (6%)
Query: 330 WARDYFPNFVEEDKRVFVSYDG---ALYFSALEQIDAGNYSCNVQSKV 374
W+ +E R + L +++ D G Y+ ++ ++
Sbjct: 39 WSCGGRKIHSQEQGRFHIENTDDLTTLIIMDVQKQDGGLYTLSLGNEF 86
>1fnf_A Fibronectin; RGD, extracellular matrix, cell adhesion protein;
2.00A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 b.1.2.1
b.1.2.1 PDB: 1mfn_A 2mfn_A 2ck2_A
Length = 368
Score = 86.4 bits (214), Expect = 4e-18
Identities = 45/227 (19%), Positives = 70/227 (30%), Gaps = 31/227 (13%)
Query: 754 EYECVVKS-TVGKISTKTTVIVEGPPGLPGGVQVVEVHKTSATIQWTDGATNGRPITHYK 812
EY V S ST + P G+ ++ S T+ W A IT Y+
Sbjct: 161 EYVVSVSSVYEQHESTPLRGRQKTGLDSPTGIDFSDITANSFTVHWI--APRA-TITGYR 217
Query: 813 IIARTNWNSTWFNVSEHVIGKEVDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPS 872
I S E + + T + N L P + Y ++A N
Sbjct: 218 IRHHPEHFSGR--PREDRVPHSRNSIT------LTN-LTPGTEYVVSIVALNGREESPLL 268
Query: 873 SPSPQYNTPADKPYQAPSRIGGGGGKIGDLSISWEPLPREKQNAPNIYYKIFWRKKNDTE 932
T +D P + + + ISW+ P YY+I + +
Sbjct: 269 IGQQS--TVSDVP-RDLEVVAATPTSL---LISWDA-P----AVTVRYYRITYGETGGNS 317
Query: 933 FQSETLKEYGNVGIAVVR--IPSEFYYTEYEVKVQAINDVGPGPESE 977
E G+ A + P +Y + V A+ G P S
Sbjct: 318 PVQEFTVP-GSKSTATISGLKP----GVDYTITVYAVTGRGDSPASS 359
Score = 83.0 bits (205), Expect = 5e-17
Identities = 33/227 (14%), Positives = 62/227 (27%), Gaps = 30/227 (13%)
Query: 754 EYECVVKS-TVGKISTKTTVIVEGPPGLPGGVQVVEVHKTSATIQWTDGATNGRPITHYK 812
EY V + K S + + P ++ + + + W +T++
Sbjct: 70 EYNVSVYTVKDDKESVPISDTIIPAVPPPTDLRFTNIGPDTMRVTWA--PPPSIDLTNFL 127
Query: 813 IIARTNWNSTWFNVSEHVIGKEVDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPS 872
+ N E+ + N L+P + Y V + E P
Sbjct: 128 VRYSPVKNEEDV--------AELSISPSDNAVVLTN-LLPGTEYVVSVSSVYEQHESTPL 178
Query: 873 SPSPQYNTPADKPYQAPSRIGGGGGKIGDLSISWEPLPREKQNAPNIYYKIFWRKKNDTE 932
+P+ I ++ W P A Y+I ++ +
Sbjct: 179 R------GRQKTGLDSPTGIDFSDITANSFTVHWIA-P----RATITGYRIRHHPEHFSG 227
Query: 933 FQSETLKEYGNVGIAVVR--IPSEFYYTEYEVKVQAINDVGPGPESE 977
E + + P TEY V + A+N P
Sbjct: 228 RPREDRVP-HSRNSITLTNLTP----GTEYVVSIVALNGREESPLLI 269
Score = 79.1 bits (195), Expect = 1e-15
Identities = 31/205 (15%), Positives = 59/205 (28%), Gaps = 28/205 (13%)
Query: 777 PPGLPGGVQVVEV-HKTSATIQWTDGATNGRPITHYKIIARTNWNSTWFNVSEHVIGKEV 835
P P + + T+ W IT Y+I ++ E V +
Sbjct: 1 PLSPPTNLHLEANPDTGVLTVSWERS--TTPDITGYRITTTPTNGQQGNSLEEVVHADQ- 57
Query: 836 DRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPSPQYNTPADKPYQAPSRIGGG 895
+ +N L P Y V + P S + P P+ +
Sbjct: 58 ------SSCTFDN-LSPGLEYNVSVYTVKDDKESVPISDTIIPAVPP------PTDLRFT 104
Query: 896 GGKIGDLSISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETLKEYGNVGIAVVR--IPS 953
+ ++W P P + + + + + E +E + V+ +P
Sbjct: 105 NIGPDTMRVTWAPPP----SIDLTNFLVRYSPVKNEEDVAELSIS-PSDNAVVLTNLLP- 158
Query: 954 EFYYTEYEVKVQAINDVGPGPESEV 978
TEY V V ++ +
Sbjct: 159 ---GTEYVVSVSSVYEQHESTPLRG 180
Score = 64.1 bits (156), Expect = 7e-11
Identities = 25/122 (20%), Positives = 40/122 (32%), Gaps = 13/122 (10%)
Query: 754 EYECVVKSTVGKISTKTTVIVE-GPPGLPGGVQVVEVHKTSATIQWTDGATNGRPITHYK 812
EY + + G+ + + + +P ++VV TS I W A + +Y+
Sbjct: 251 EYVVSIVALNGREESPLLIGQQSTVSDVPRDLEVVAATPTSLLISWD--APAV-TVRYYR 307
Query: 813 IIARTNWNSTWFNVSEHVIGKEVDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPS 872
I ++ V E + T I L P Y V A G S
Sbjct: 308 ITYGETGGNSP--VQEFTVPGSKSTAT------ISG-LKPGVDYTITVYAVTGRGDSPAS 358
Query: 873 SP 874
S
Sbjct: 359 SK 360
>2bk8_A Connectin, M1, titin heart isoform N2-B; IG domain, M-BAND,
structural protein, muscle, antibo; 1.69A {Homo sapiens}
Length = 97
Score = 79.3 bits (196), Expect = 4e-18
Identities = 20/88 (22%), Positives = 32/88 (36%), Gaps = 5/88 (5%)
Query: 592 RPLESETYAGEGGNVTIFCNPEAAPKPKFV-WKKDGNIIGSGGRRKIFENGN---LLISP 647
+ EGG+V C E + V W + + + +I L +
Sbjct: 6 GQIMHAV-GEEGGHVKYVCKIENYDQSTQVTWYFGVRQLENSEKYEITYEDGVAILYVKD 64
Query: 648 VSRDDSGIYSCTATNVHGMDESKGRLIV 675
+++ D G Y C N +G D S L V
Sbjct: 65 ITKLDDGTYRCKVVNDYGEDSSYAELFV 92
Score = 64.6 bits (158), Expect = 6e-13
Identities = 16/79 (20%), Positives = 28/79 (35%), Gaps = 5/79 (6%)
Query: 414 GDKVRLECVAFGYPVPSY-NWTRRGSPLPRNA----YFENFNRILTIPNVKVEDQGEYIC 468
G V+ C Y + W L + +E+ IL + ++ D G Y C
Sbjct: 16 GGHVKYVCKIENYDQSTQVTWYFGVRQLENSEKYEITYEDGVAILYVKDITKLDDGTYRC 75
Query: 469 RASNDRSALESSVTISIQA 487
+ ND S + ++
Sbjct: 76 KVVNDYGEDSSYAELFVKG 94
Score = 56.6 bits (137), Expect = 5e-10
Identities = 16/97 (16%), Positives = 34/97 (35%), Gaps = 13/97 (13%)
Query: 491 FTIPLTDKHMDNQADLTWTCEAFGVPDVTY-SWFRNGELLNSETLPLEDQDRYFIQDN-- 547
+ + + + + C+ T +W+ LE+ ++Y I
Sbjct: 4 VSGQIMHAVGEEGGHVKYVCKIENYDQSTQVTWYFGVR-------QLENSEKYEITYEDG 56
Query: 548 --VLTIRYLNPERDPAMYQCRAKNQLKTRYSSAQLRV 582
+L ++ + D Y+C+ N S A+L V
Sbjct: 57 VAILYVKDITKL-DDGTYRCKVVNDYGEDSSYAELFV 92
Score = 53.5 bits (129), Expect = 6e-09
Identities = 16/100 (16%), Positives = 35/100 (35%), Gaps = 14/100 (14%)
Query: 684 QLPPKITIAAHRNLQLRCSA-HTEELLDVAYIWTHNGVRIGNMDLNELETPNINI--DGG 740
+++ C + ++ V W ++ N + I + G
Sbjct: 6 GQIMHAVGEEGGHVKYVCKIENYDQSTQV--TWYFGVRQLEN-------SEKYEITYEDG 56
Query: 741 L--LEITNASFADAGEYECVVKSTVGKISTKTTVIVEGPP 778
+ L + + + D G Y C V + G+ S+ + V+G
Sbjct: 57 VAILYVKDITKLDDGTYRCKVVNDYGEDSSYAELFVKGVR 96
Score = 52.3 bits (126), Expect = 1e-08
Identities = 18/101 (17%), Positives = 28/101 (27%), Gaps = 17/101 (16%)
Query: 189 GPYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSY-EWFKEDYVQDRLVANLIDPLS 247
G Q V + + C Y + W+ ++
Sbjct: 1 GAMVSGQIMHAVGEEGG-----HVKYVCKIENYDQSTQVTWYFGV--------RQLENSE 47
Query: 248 DKRFTLSGGN--LIINDPRQVEDRGSYHCKASNKFGSIISE 286
T G L + D + D G+Y CK N +G S
Sbjct: 48 KYEITYEDGVAILYVKDITK-LDDGTYRCKVVNDYGEDSSY 87
>2kbg_A N-CAM 2, neural cell adhesion molecule 2; fibronectin type III
module, beta-sheet sandwich, cell membrane,
glycoprotein, immunoglobulin domain; NMR {Homo sapiens}
Length = 114
Score = 79.5 bits (196), Expect = 6e-18
Identities = 22/112 (19%), Positives = 36/112 (32%), Gaps = 12/112 (10%)
Query: 774 VEGPPGLPGGVQVVEVHKTSATIQWTDGATNGRPITHYKIIARTNWNSTWFNVSEHVIGK 833
P P + S + T G PI Y + R+ + + +
Sbjct: 5 SMREPSPPS-IHGQPSSGKSFKLSITKQDDGGAPILEYIVKYRSKDKEDQWLEKK--VQG 61
Query: 834 EVDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPSPQYNTPADKP 885
D +E+ L YE ++ A N LGY EP+ ++ P
Sbjct: 62 NKDHII------LEH-LQWTMGYEVQITAANRLGYSEPTVYE--FSMPPKPN 104
Score = 40.6 bits (95), Expect = 2e-04
Identities = 14/77 (18%), Positives = 29/77 (37%), Gaps = 5/77 (6%)
Query: 902 LSISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETLKEYGNVGIAVVRIPSEFYYTEYE 961
+S ++ AP + Y + +R K+ + E + I + + YE
Sbjct: 24 FKLSITK--QDDGGAPILEYIVKYRSKDKEDQWLEKKVQGNKDHIILEHLQW---TMGYE 78
Query: 962 VKVQAINDVGPGPESEV 978
V++ A N +G +
Sbjct: 79 VQITAANRLGYSEPTVY 95
>2d9q_B Granulocyte colony-stimulating factor receptor; cytokine,
ligand-receptor complex, signaling protein-cytokin; HET:
NAG; 2.80A {Homo sapiens} SCOP: b.1.1.3 b.1.2.1 b.1.2.1
Length = 313
Score = 85.0 bits (209), Expect = 6e-18
Identities = 38/301 (12%), Positives = 81/301 (26%), Gaps = 20/301 (6%)
Query: 686 PPKITIAAHRNLQLRCSAHTEELL---DVAYIWTHNGVRIGNMDLNELETPNINIDGGLL 742
+ + C + +W + + ++
Sbjct: 7 VSAPIVHLGDPITASCIIKQNCSHLDPEPQILWRLGAELQPG---GRQQRLSDGTQESII 63
Query: 743 EITNASFADAGEYECVVKSTVGKISTKTTVIVEGPPGLPGGVQ-VVEVHKTSATIQWTDG 801
+ + + A + +I + + PP +P + ++ + +S QW G
Sbjct: 64 TLPHLNHTQAFLSCSLNWGNSLQILDQVELRAGYPPAIPHNLSCLMNLTTSSLICQWEPG 123
Query: 802 ATNGRPITHYKIIARTNWNSTWFNVSEHVIGKEVDRYTGRKEASIE-NVLVPWSTYEFKV 860
P + ++ N S + G+ SI L+ + V
Sbjct: 124 PETHLPTSFTLKSFKSRGNCQTQGDSIL----DCVPKDGQSHCSIPRKHLLLYQNMGIWV 179
Query: 861 IAGNELGYG--EPSSPSPQYNTPADKPYQ--APSRIGGGGGKIGDLSISWEPLPREKQNA 916
A N LG P + P + G L +SWEP
Sbjct: 180 QAENALGTSMSPQLCLDPMDVVKLEPPMLRTMDPSPEAAPPQAGCLQLSWEPWQ--PGLH 237
Query: 917 PNIYYKIFWRKKNDTEFQSETLKEYGNVGIAVVRIPSEFYYTEYEVKVQAINDVGPGPES 976
N ++ + + + + + T Y ++++ I PG S
Sbjct: 238 INQKCELRHKPQRGEASWALV--GPLPLEALQYELCGLLPATAYTLQIRCIRWPLPGHWS 295
Query: 977 E 977
+
Sbjct: 296 D 296
Score = 64.6 bits (156), Expect = 4e-11
Identities = 31/306 (10%), Positives = 79/306 (25%), Gaps = 31/306 (10%)
Query: 602 EGGNVTIFC-----NPEAAPKPKFVWKKDGNIIGSGGRRKIFENG---NLLISPVSRDDS 653
G +T C P+P+ +W+ + G ++++ + + + ++ +
Sbjct: 14 LGDPITASCIIKQNCSHLDPEPQILWRLGAELQPGGRQQRLSDGTQESIITLPHLNHTQA 73
Query: 654 GIYSCTATNVHGMDESKGRLIVLHGPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAY 713
SC+ + + + P + +L + E L ++
Sbjct: 74 F-LSCSLNWGNSLQILDQVELRAGYPPAIPHNLSCLMNLTTSSLICQWEPGPETHLPTSF 132
Query: 714 IWTHNGVRIGNMDLNELETPNINIDGGL---LEITNASFADAGEYECVVKSTVGKIS--- 767
R + + DG + + ++ +G
Sbjct: 133 TLKSFKSRGNCQTQGDSILDCVPKDGQSHCSIPRKHLLLYQNMGIWVQAENALGTSMSPQ 192
Query: 768 ---TKTTVIVEGPPGLPGGVQVVEVHK---TSATIQWTDGATNGRPITHYKIIARTNWNS 821
V+ PP L E + W ++ +
Sbjct: 193 LCLDPMDVVKLEPPMLRTMDPSPEAAPPQAGCLQLSWEPWQPGLHINQKCELRHKPQRGE 252
Query: 822 TWFNVSEHVIGKEVDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPSPQYN-- 879
+ + + + + + + L+P + Y ++ G S SP
Sbjct: 253 ASWALVGPLPLEAL-------QYELCG-LLPATAYTLQIRCIRWPLPGHWSDWSPSLELR 304
Query: 880 TPADKP 885
T
Sbjct: 305 TTERAA 310
>1i1r_A GP130, interleukin-6 receptor beta chain; cytokine/receptor
complex, GP130; 2.40A {Homo sapiens} SCOP: b.1.2.1
b.1.2.1 b.1.2.1 PDB: 1p9m_A
Length = 303
Score = 84.5 bits (208), Expect = 8e-18
Identities = 40/301 (13%), Positives = 89/301 (29%), Gaps = 28/301 (9%)
Query: 685 LPPKITIAAHRNLQLRCSA-----HTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDG 739
P + H N C + +W N I IN
Sbjct: 10 SPESPVVQLHSNFTAVCVLKEKCMDYFHVNANYIVWKTNHFTIPKEQYTI-----INRTA 64
Query: 740 GLLEITNASFADAGEY-ECVVKSTVGKISTKTTVIVEGPPGLPGGVQVVEVHKTSATIQW 798
+ T+ + + + + + T+I PP P + + +W
Sbjct: 65 SSVTFTDIASLNIQLTCNILTFGQLEQNVYGITIISGLPPEKPKNLSCIVNEGKKMRCEW 124
Query: 799 TDGATNGRPITHYKIIARTNWNSTWFNVSEHVIGKEVDRYTGRKEASIENVLVPWSTYEF 858
G T++ + + + ++ +++ V + E
Sbjct: 125 DGG-RETHLETNFTLKSEWATHKFADCKAKR---------DTPTSCTVDYSTVYFVNIEV 174
Query: 859 KVIAGNELGYGEPSSPS--PQYNTPADKPYQAPSRIGGGGGKIGDLSISWEPLPREKQNA 916
V A N LG + P Y + P+ + L ++W ++
Sbjct: 175 WVEAENALGKVTSDHINFDPVYKVKPNPPHN--LSVINSEELSSILKLTWTNPSI--KSV 230
Query: 917 PNIYYKIFWRKKNDTEFQSETLKEYGNVGIAVVRIPSEFYYTEYEVKVQAINDVGPGPES 976
+ Y I +R K+ + + ++ + + +TEY +++ + + G G S
Sbjct: 231 IILKYNIQYRTKDASTWSQIPPEDT-ASTRSSFTVQDLKPFTEYVFRIRCMKEDGKGYWS 289
Query: 977 E 977
+
Sbjct: 290 D 290
Score = 75.6 bits (185), Expect = 6e-15
Identities = 46/303 (15%), Positives = 87/303 (28%), Gaps = 37/303 (12%)
Query: 602 EGGNVTIFC-------NPEAAPKPKFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSG 654
N T C + VWK + I I + + +
Sbjct: 18 LHSNFTAVCVLKEKCMDYFHVNANYIVWKTNHFTIPKEQYTIINRTASSVTFTDIASLNI 77
Query: 655 IYSCTATNVH--GMDESKGRLIVLHGPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVA 712
+C + +I P + L + + ++ E L+
Sbjct: 78 QLTCNILTFGQLEQNVYGITIISGLPPEKPKNL--SCIVNEGKKMRCEWDGGRETHLETN 135
Query: 713 YIWT--HNGVRIGNMDLNELETPNINIDGGLLEITNASFADAGEYECVVKSTVGKIS--- 767
+ + + + +D + N ++ +GK++
Sbjct: 136 FTLKSEWATHKFADCKAKRDTPTSCTVDYSTVYFVNIEV------WVEAENALGKVTSDH 189
Query: 768 --TKTTVIVEGPPGLPGGVQV--VEVHKTSATIQWTDGATNGRPITHYKIIARTNWNSTW 823
V P P + V E + + WT+ + I Y I RT STW
Sbjct: 190 INFDPVYKV--KPNPPHNLSVINSEELSSILKLTWTNPSIKSVIILKYNIQYRTKDASTW 247
Query: 824 FNVSEHVIGKEVDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPSP--QYNTP 881
+ D + R ++++ L P++ Y F++ E G G S S T
Sbjct: 248 SQI------PPEDTASTRSSFTVQD-LKPFTEYVFRIRCMKEDGKGYWSDWSEEASGITY 300
Query: 882 ADK 884
D+
Sbjct: 301 EDR 303
>2yuw_A Myosin binding protein C, SLOW type; fibronectin III domain, SLOW-
type protein, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 110
Score = 78.5 bits (194), Expect = 1e-17
Identities = 21/102 (20%), Positives = 34/102 (33%), Gaps = 10/102 (9%)
Query: 775 EGPPGLPGGVQVVEVHKTSATIQWTDGATNGR-PITHYKIIARTNWNSTWFNVSEHVIGK 833
P + V V T+ T++W G + Y + W ++ +I K
Sbjct: 5 SSGTSPPTLLTVDSVTDTTVTMRWRPPDHIGAAGLDGYVLEYCFEGTEDWIVANKDLIDK 64
Query: 834 EVDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPS 875
++T I L + +V A N G EP S
Sbjct: 65 T--KFT------ITG-LPTDAKIFVRVKAVNAAGASEPKYYS 97
Score = 35.4 bits (82), Expect = 0.016
Identities = 11/84 (13%), Positives = 24/84 (28%), Gaps = 18/84 (21%)
Query: 902 LSISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETLKEYGNVGIAVVRIPSEFY----- 956
+++ W P P A Y + + + ++ I +
Sbjct: 24 VTMRWRP-PDHIGAAGLDGYVLEYCFEGTEDWIV----------ANKDLIDKTKFTITGL 72
Query: 957 --YTEYEVKVQAINDVGPGPESEV 978
+ V+V+A+N G
Sbjct: 73 PTDAKIFVRVKAVNAAGASEPKYY 96
>2ed7_A Netrin receptor DCC; tumor suppressor protein DCC, colorectal
cancer suppressor, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 119
Score = 78.6 bits (194), Expect = 1e-17
Identities = 25/119 (21%), Positives = 38/119 (31%), Gaps = 9/119 (7%)
Query: 767 STKTTVIVEGPPGLPGGVQVVEVHKTSATIQWTDGATNGRPITHYKIIARTNWNSTWFNV 826
P P V V V + W A I + + ++ +
Sbjct: 7 GKPAIPSSSVLPSAPRDVVPVLVSSRFVRLSWRPPAEAKGNIQTFTVFFSREGDNRERAL 66
Query: 827 SEHVIGKEVDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPSPQYNTPADKP 885
+ G + ++ N L P + Y F+V+A NE G GE S P P P
Sbjct: 67 NTTQPGSL--------QLTVGN-LKPEAMYTFRVVAYNEWGPGESSQPIKVATQPESGP 116
Score = 49.7 bits (119), Expect = 2e-07
Identities = 21/124 (16%), Positives = 39/124 (31%), Gaps = 31/124 (25%)
Query: 867 GYGEPSSPSPQYNTPADKPYQAPSRIGGGGGKIGDLS-----ISWEPLPREKQNAPNIYY 921
G S P + + P AP + +S +SW P + +
Sbjct: 1 GSSGSSGK-PAIPSSSVLP-SAPRDV-----VPVLVSSRFVRLSWRP--PAEAKGNIQTF 51
Query: 922 KIFWRKKNDTEFQSETLKEYGNVGIAVVRIPSEFY-------YTEYEVKVQAINDVGPGP 974
+F+ ++ D ++ + + S Y +V A N+ GPG
Sbjct: 52 TVFFSREGDNRERA----------LNTTQPGSLQLTVGNLKPEAMYTFRVVAYNEWGPGE 101
Query: 975 ESEV 978
S+
Sbjct: 102 SSQP 105
>1bpv_A Titin, A71, connectin; fibronectin type III; NMR {Homo sapiens}
SCOP: b.1.2.1
Length = 112
Score = 78.1 bits (193), Expect = 1e-17
Identities = 28/101 (27%), Positives = 41/101 (40%), Gaps = 11/101 (10%)
Query: 777 PPGLPGGVQVVEVHKTSATIQWTD-GATNGRPITHYKIIARTNWNSTWFNVSEHVIGKEV 835
P PG + + + + T++W T G IT Y + R N W + I +
Sbjct: 10 PIDPPGKPVPLNITRHTVTLKWAKPEYTGGFKITSYIVEKRDLPNGRWLKANFSNILEN- 68
Query: 836 DRYTGRKEASIENVLVPWSTYEFKVIAGNELG-YGEPSSPS 875
+T + L + YEF+VIA N G PS PS
Sbjct: 69 -EFT------VSG-LTEDAAYEFRVIAKNAAGAISPPSEPS 101
Score = 31.2 bits (71), Expect = 0.45
Identities = 13/88 (14%), Positives = 22/88 (25%), Gaps = 22/88 (25%)
Query: 902 LSISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETLKEYGNVGIAVVRIPSEFY----- 956
+++ W P Y + R + + I +
Sbjct: 27 VTLKWAK-PEYTGGFKITSYIVEKRDLPNGRWLK----------ANFSNILENEFTVSGL 75
Query: 957 --YTEYEVKVQAINDVG----PGPESEV 978
YE +V A N G P S+
Sbjct: 76 TEDAAYEFRVIAKNAAGAISPPSEPSDA 103
>2ens_A Advanced glycosylation END product-specific receptor;
beta-sandwich, C2-SET, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 96
Score = 77.5 bits (191), Expect = 2e-17
Identities = 21/90 (23%), Positives = 33/90 (36%), Gaps = 8/90 (8%)
Query: 586 KPSFKKRPLESETYAGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGNLLI 645
+ P GG VT+ C A P P+ W KDG + + L++
Sbjct: 10 EVQLVVEP--EGGAVAPGGTVTLTCEVPAQPSPQIHWMKDGVPLPLPP------SPVLIL 61
Query: 646 SPVSRDDSGIYSCTATNVHGMDESKGRLIV 675
+ D G YSC AT+ + + +
Sbjct: 62 PEIGPQDQGTYSCVATHSSHGPQESRAVSI 91
Score = 76.7 bits (189), Expect = 4e-17
Identities = 24/78 (30%), Positives = 35/78 (44%), Gaps = 6/78 (7%)
Query: 413 AGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYFENFNRILTIPNVKVEDQGEYICRASN 472
G V L C P P +W + G PLP + +L +P + +DQG Y C A++
Sbjct: 24 PGGTVTLTCEVPAQPSPQIHWMKDGVPLPLPP-----SPVLILPEIGPQDQGTYSCVATH 78
Query: 473 DRSALESSVTISIQ-AEP 489
+ S +SI EP
Sbjct: 79 SSHGPQESRAVSISIIEP 96
Score = 64.0 bits (156), Expect = 9e-13
Identities = 20/108 (18%), Positives = 33/108 (30%), Gaps = 13/108 (12%)
Query: 480 SVTISIQAEPNFTIPLTDKHMDNQADLTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQ 539
S S E + + +T TCE P W ++G L
Sbjct: 2 SSGSSGLEEVQLVVEPEGGAVAPGGTVTLTCEVPAQPSPQIHWMKDGVPLPLPP------ 55
Query: 540 DRYFIQDNVLTIRYLNPERDPAMYQCRAKNQLKTRYSSAQLRVLTLKP 587
VL + + P+ D Y C A + S + + ++P
Sbjct: 56 ------SPVLILPEIGPQ-DQGTYSCVATHSSHGPQESRAVSISIIEP 96
Score = 59.7 bits (145), Expect = 4e-11
Identities = 19/102 (18%), Positives = 34/102 (33%), Gaps = 22/102 (21%)
Query: 190 PYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDK 249
+ +P +TL+C P+P W K+ PL
Sbjct: 11 VQLVVEPEGGAVAPG-----GTVTLTCEVPAQPSPQIHWMKDG-----------VPLPL- 53
Query: 250 RFTLSGGNLIINDPRQVEDRGSYHCKASNKFGSI-ISESVQL 290
LI+ + +D+G+Y C A++ S +V +
Sbjct: 54 ---PPSPVLILPE-IGPQDQGTYSCVATHSSHGPQESRAVSI 91
Score = 47.4 bits (113), Expect = 7e-07
Identities = 15/94 (15%), Positives = 27/94 (28%), Gaps = 16/94 (17%)
Query: 686 PPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEIT 745
P +A + L C + + W +GV + +L +
Sbjct: 17 PEGGAVAPGGTVTLTCEVPAQPSPQI--HWMKDGVPLPLPP------------SPVLILP 62
Query: 746 NASFADAGEYECVVKSTVGKI--STKTTVIVEGP 777
D G Y CV + S ++ + P
Sbjct: 63 EIGPQDQGTYSCVATHSSHGPQESRAVSISIIEP 96
>1x5x_A Fibronectin type-III domain containing protein 3A; structural
genomics, KIAA0970, NPPSFA; NMR {Homo sapiens} SCOP:
b.1.2.1
Length = 109
Score = 77.8 bits (192), Expect = 2e-17
Identities = 24/114 (21%), Positives = 39/114 (34%), Gaps = 12/114 (10%)
Query: 774 VEGPPGLPGGVQVVEVHKTSATIQWTDGA-TNGRPITHYKIIARTNWNSTWFNVSEHVIG 832
P +P + + T ++QW+ + T Y + + F
Sbjct: 4 GSSGPSMPASPVLTKAGITWLSLQWSKPSGTPSDEGISYILEMEEETSGYGFKPKYDGED 63
Query: 833 KEVDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPSPQYNTPADKPY 886
YT ++N L + Y+FKVIA N G PS ++ T D
Sbjct: 64 L---AYT------VKN-LRRSTKYKFKVIAYNSEGKSNPSEVV-EFTTCPDSGP 106
Score = 36.5 bits (85), Expect = 0.006
Identities = 18/89 (20%), Positives = 28/89 (31%), Gaps = 29/89 (32%)
Query: 902 LSISWEPLPREKQNAPNIYYKIFWRKKN------------DTEFQSETLKEYGNVGIAVV 949
LS+ W P + I Y + ++ D + + L+
Sbjct: 24 LSLQWSK-PSGTPSDEGISYILEMEEETSGYGFKPKYDGEDLAYTVKNLRRS-------- 74
Query: 950 RIPSEFYYTEYEVKVQAINDVGPGPESEV 978
T+Y+ KV A N G SEV
Sbjct: 75 --------TKYKFKVIAYNSEGKSNPSEV 95
>2cr3_A Basic fibroblast growth factor receptor 1; IG fold, FGFR1, BFGF-R,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 99
Score = 77.4 bits (191), Expect = 2e-17
Identities = 16/94 (17%), Positives = 29/94 (30%), Gaps = 4/94 (4%)
Query: 587 PSFKKRPLESETYAGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGNLLIS 646
S G + + C W +DG + R +I + +
Sbjct: 4 GSSGVEV--ESFLVHPGDLLQLRCRLRDDV-QSINWLRDGVQLAESNRTRI-TGEEVEVQ 59
Query: 647 PVSRDDSGIYSCTATNVHGMDESKGRLIVLHGPS 680
DSG+Y+C ++ G D + + V
Sbjct: 60 DSVPADSGLYACVTSSPSGSDTTYFSVNVSDALP 93
Score = 77.4 bits (191), Expect = 2e-17
Identities = 15/76 (19%), Positives = 28/76 (36%), Gaps = 1/76 (1%)
Query: 414 GDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYFENFNRILTIPNVKVEDQGEYICRASND 473
GD ++L C S NW R G L + + + + D G Y C S+
Sbjct: 18 GDLLQLRCRLRDDV-QSINWLRDGVQLAESNRTRITGEEVEVQDSVPADSGLYACVTSSP 76
Query: 474 RSALESSVTISIQAEP 489
+ + ++++
Sbjct: 77 SGSDTTYFSVNVSDAL 92
Score = 62.0 bits (151), Expect = 5e-12
Identities = 23/93 (24%), Positives = 37/93 (39%), Gaps = 10/93 (10%)
Query: 686 PPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEIT 745
+ LQLRC + + W +GV++ E+ I G +E+
Sbjct: 10 VESFLVHPGDLLQLRCRLRDDVQ---SINWLRDGVQLA-------ESNRTRITGEEVEVQ 59
Query: 746 NASFADAGEYECVVKSTVGKISTKTTVIVEGPP 778
++ AD+G Y CV S G +T +V V
Sbjct: 60 DSVPADSGLYACVTSSPSGSDTTYFSVNVSDAL 92
Score = 61.3 bits (149), Expect = 1e-11
Identities = 15/95 (15%), Positives = 26/95 (27%), Gaps = 19/95 (20%)
Query: 190 PYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPL-SD 248
+ + + + L C S W ++ L
Sbjct: 4 GSSGVEVESFLVHPG-----DLLQLRCRLRDDV-QSINWLRDG-----------VQLAES 46
Query: 249 KRFTLSGGNLIINDPRQVEDRGSYHCKASNKFGSI 283
R ++G + + D D G Y C S+ GS
Sbjct: 47 NRTRITGEEVEVQDSVP-ADSGLYACVTSSPSGSD 80
Score = 61.3 bits (149), Expect = 1e-11
Identities = 15/102 (14%), Positives = 33/102 (32%), Gaps = 9/102 (8%)
Query: 487 AEPNFTIPLTDKHMDNQADLTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQD 546
+ + + + + L C + +W R+G L + +R I
Sbjct: 2 SSGSSGVEVESFLVHPGDLLQLRCRLRDDVQ-SINWLRDGV-------QLAESNRTRITG 53
Query: 547 NVLTIRYLNPERDPAMYQCRAKNQLKTRYSSAQLRVLTLKPS 588
+ ++ P D +Y C + + + + V PS
Sbjct: 54 EEVEVQDSVPA-DSGLYACVTSSPSGSDTTYFSVNVSDALPS 94
>2edh_A Obscurin; structural genomics, NPPSFA, national project on P
structural and functional analyses, riken structural
genomics/proteomics initiative; NMR {Homo sapiens}
Length = 113
Score = 77.8 bits (192), Expect = 2e-17
Identities = 27/108 (25%), Positives = 40/108 (37%), Gaps = 11/108 (10%)
Query: 576 SSAQLRVLTLKPSFKKRPLESETYAGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRR 635
+SA L V L F + A EG + C E + W K + G R
Sbjct: 9 TSAMLTVRALPIKFTEGL--RNEEATEGATAVLRC--ELSKMAPVEWWKGHETLRDGDRH 64
Query: 636 KIFENGN---LLISPVSRDDSGIYSCTATNVHGMDESKGRLIVLHGPS 680
+ ++G L I + +D+G Y C G + + L V PS
Sbjct: 65 SLRQDGARCELQIRGLVAEDAGEYLCMC----GKERTSAMLTVRAMPS 108
Score = 59.7 bits (145), Expect = 5e-11
Identities = 29/125 (23%), Positives = 48/125 (38%), Gaps = 19/125 (15%)
Query: 472 NDRSALESSVTISIQAEP-NFTIPLTDKHMDNQADLTWTCEAFGVPDVTYSWFRNGELLN 530
+ S+ +S ++++A P FT L ++ A CE + V W++ E
Sbjct: 2 SSGSSGRTSAMLTVRALPIKFTEGLRNEEATEGATAVLRCELSKMAPVE--WWKGHE--- 56
Query: 531 SETLPLEDQDRYFIQDN----VLTIRYLNPERDPAMYQCRAKNQLKTRYSSAQLRVLTLK 586
L D DR+ ++ + L IR L E D Y C + +SA L V +
Sbjct: 57 ----TLRDGDRHSLRQDGARCELQIRGLVAE-DAGEYLCMCGKE----RTSAMLTVRAMP 107
Query: 587 PSFKK 591
Sbjct: 108 SGPSS 112
Score = 57.4 bits (139), Expect = 4e-10
Identities = 17/80 (21%), Positives = 28/80 (35%), Gaps = 10/80 (12%)
Query: 414 GDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYF----ENFNRILTIPNVKVEDQGEYICR 469
G L C + W + L + L I + ED GEY+C
Sbjct: 34 GATAVLRCELSK--MAPVEWWKGHETLRDGDRHSLRQDGARCELQIRGLVAEDAGEYLCM 91
Query: 470 ASNDRSALESSVTISIQAEP 489
+R +S ++++A P
Sbjct: 92 CGKER----TSAMLTVRAMP 107
Score = 55.1 bits (133), Expect = 2e-09
Identities = 23/121 (19%), Positives = 33/121 (27%), Gaps = 19/121 (15%)
Query: 665 GMDESKGRLIVLHGPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGN 724
+ L V P + + LRC W +
Sbjct: 5 SSGRTSAMLTVRALPIKFTEGLRNEEATEGATAVLRCELSK----MAPVEWWKGHETL-- 58
Query: 725 MDLNELETPNINI--DGGL--LEITNASFADAGEYECVVKSTVGKISTKTTVIVEGPPGL 780
+ ++ DG L+I DAGEY C+ GK T + V P
Sbjct: 59 -----RDGDRHSLRQDGARCELQIRGLVAEDAGEYLCM----CGKERTSAMLTVRAMPSG 109
Query: 781 P 781
P
Sbjct: 110 P 110
Score = 40.0 bits (94), Expect = 4e-04
Identities = 15/95 (15%), Positives = 20/95 (21%), Gaps = 18/95 (18%)
Query: 190 PYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDK 249
F + + L C EW+K +
Sbjct: 20 IKFTEGLRNEEATEGA-----TAVLRCELSK--MAPVEWWKGH--------ETLRDGDRH 64
Query: 250 RFTLSGGN--LIINDPRQVEDRGSYHCKASNKFGS 282
G L I ED G Y C + S
Sbjct: 65 SLRQDGARCELQIRGL-VAEDAGEYLCMCGKERTS 98
>3t1w_A Four-domain fibronectin fragment; human fibronectin, FN type-III
domain, oncofetal splice VARI extra-domain B, EIIIB,
ED-B, angiogenesis, integrin; 2.40A {Homo sapiens}
Length = 375
Score = 84.1 bits (208), Expect = 3e-17
Identities = 35/232 (15%), Positives = 70/232 (30%), Gaps = 38/232 (16%)
Query: 754 EYECVVKS-TVGKISTKTTVIVEGPPGLPGGVQVVEVHKTSATIQWTDGATNGRPITHYK 812
+Y+ V + G S TT+ + P ++ + + + W +T++
Sbjct: 162 DYDISVITLINGGESAPTTLTQQTAVPPPTDLRFTNIGPDTMRVTWA--PPPSIDLTNFL 219
Query: 813 IIARTNWNSTWFNVSEHVIGKEVDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPS 872
+ N V+E I + + N L+P + Y V + E P
Sbjct: 220 VRYSPVKNEED--VAELSISPSDNAVV------LTN-LLPGTEYVVSVSSVYEQHESTPL 270
Query: 873 SPSPQYNTPADKPY------QAPSRIGGGGGKIGDLSISWEPLPREKQNAPNIYYKIFWR 926
+ T D P + ++ W P A Y+I
Sbjct: 271 RGRQK--TGLDSPTGIDFSDITANSF----------TVHWIA-P----RATITGYRIRHH 313
Query: 927 KKNDTEFQSETLKEYGNVGIAVVRIPSEFYYTEYEVKVQAINDVGPGPESEV 978
++ + ++ + + + TEY V + A+N P
Sbjct: 314 PEHFSG---RPREDRVPHSRNSITLTNLTPGTEYVVSIVALNGREESPLLIG 362
Score = 84.1 bits (208), Expect = 3e-17
Identities = 32/205 (15%), Positives = 61/205 (29%), Gaps = 28/205 (13%)
Query: 777 PPGLPGGVQVVEV-HKTSATIQWTDGATNGRPITHYKIIARTNWNSTWFNVSEHVIGKEV 835
P P + + T+ W + IT Y+I ++ E V +
Sbjct: 2 PLSPPTNLHLEANPDTGVLTVSWE--RSTTPDITGYRITTTPTNGQQGNSLEEVVHADQ- 58
Query: 836 DRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPSPQYNTPADKPYQAPSRIGGG 895
+ +N L P Y V + P S + P + +
Sbjct: 59 ------SSCTFDN-LSPGLEYNVSVYTVKDDKESVPIS----DTIIPEVP--QLTDLSFV 105
Query: 896 GGKIGDLSISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETLKEYGNVGIAVVR--IPS 953
+ + W PL ++ I Y+I + E + +VG V P
Sbjct: 106 DITDSSIGLRWTPLN----SSTIIGYRITVVAAGEGIPIFEDFVD-SSVGYYTVTGLEP- 159
Query: 954 EFYYTEYEVKVQAINDVGPGPESEV 978
+Y++ V + + G + +
Sbjct: 160 ---GIDYDISVITLINGGESAPTTL 181
Score = 79.9 bits (197), Expect = 6e-16
Identities = 40/229 (17%), Positives = 73/229 (31%), Gaps = 31/229 (13%)
Query: 754 EYECVVKS-TVGKISTKTTVIVEGPPGLPGGVQVVEVHKTSATIQWTDGATNGRPITHYK 812
EY V + K S + + + V++ +S ++WT + I Y+
Sbjct: 71 EYNVSVYTVKDDKESVPISDTIIPEVPQLTDLSFVDITDSSIGLRWT-PLNSS-TIIGYR 128
Query: 813 IIARTNWNSTWFNVSEHVIGKEVDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPS 872
I + E + V YT + L P Y+ VI G P+
Sbjct: 129 ITVVAAGEGIP--IFEDFVDSSVGYYT------VTG-LEPGIDYDISVITLINGGESAPT 179
Query: 873 SPSPQYNTPADKPYQ-APSRIGGGGGKIGDLSISWEPLPREKQNAPNIYYKIFWRKKNDT 931
+ + Q T P + IG + ++W P P + + + + +
Sbjct: 180 TLTQQ--TAVPPPTDLRFTNIGP-----DTMRVTWAPPP----SIDLTNFLVRYSPVKNE 228
Query: 932 EFQSETLKEYGNVGIAVVR--IPSEFYYTEYEVKVQAINDVGPGPESEV 978
E L + V+ +P TEY V V ++ +
Sbjct: 229 E-DVAELSISPSDNAVVLTNLLP----GTEYVVSVSSVYEQHESTPLRG 272
>3mj6_A Junctional adhesion molecule-like; immunoglobulin tandem domain,
cell adhesion, cell junction, glycoprotein,
immunoglobulin domain, membrane; HET: NAG FUC; 2.19A
{Mus musculus} PDB: 3mj7_A* 3mj9_A*
Length = 268
Score = 81.8 bits (201), Expect = 3e-17
Identities = 37/246 (15%), Positives = 69/246 (28%), Gaps = 55/246 (22%)
Query: 581 RVLTLKPSFKKRPLESETYAGEGGNVTIFC---NPEAAPKPKFVWKKDGNIIGS------ 631
R L P + G +V + C E + W + +
Sbjct: 1 RSQGL-PGLTVSS--PQLRVHVGESVLMGCVVQRTEEKHVDRVDWLFSKDKDDASEYVLF 57
Query: 632 ------------GGRRKIF-----ENGNLLISPVSRDDSGIYSCTATNVHGMDESKGRLI 674
R + +G+LL+ V + D GIY+C + K +
Sbjct: 58 YYSNLSVPTGRFQNRSHLVGDTFHNDGSLLLQDVQKADEGIYTCEIRLKNESMVMKKPVE 117
Query: 675 VLHGPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYI-WT---------------HN 718
+ P P + + Q+RCS + E V + W +
Sbjct: 118 LWVLPEE----PRDLRVRVGDTTQMRCSIQSTEEKRVTKVNWMFSSGSHTEEETVLSYDS 173
Query: 719 GVRIGNMDLNELETPNINIDG------GLLEITNASFADAGEYECVVKSTVGKISTKTTV 772
+R G +++ G G +++ +D G Y C + + +
Sbjct: 174 NMRSGKFQSLGRFRNRVDLTGDISRNDGSIKLQTVKESDQGIYTCSIYVGKLESRKTIVL 233
Query: 773 IVEGPP 778
V
Sbjct: 234 HVVQDE 239
Score = 73.4 bits (179), Expect = 2e-14
Identities = 28/232 (12%), Positives = 57/232 (24%), Gaps = 55/232 (23%)
Query: 413 AGDKVRLECV---AFGYPVPSYNWTRRGSPLPRNAYFENF------------NRI----- 452
G+ V + CV V +W + Y + NR
Sbjct: 19 VGESVLMGCVVQRTEEKHVDRVDWLFSKDKDDASEYVLFYYSNLSVPTGRFQNRSHLVGD 78
Query: 453 -------LTIPNVKVEDQGEYICRASNDRSALESSVTISIQAEPNFTIPLTDKHMDNQAD 505
L + +V+ D+G Y C ++ + + P L +
Sbjct: 79 TFHNDGSLLLQDVQKADEGIYTCEIRLKNESMVMKKPVELWVLPEEPRDLR---VRVGDT 135
Query: 506 LTWTCEAFGVPD---VTYSWFRNGELL-----------NSETLPLEDQDRYFIQ------ 545
C + +W + N + + R+ +
Sbjct: 136 TQMRCSIQSTEEKRVTKVNWMFSSGSHTEEETVLSYDSNMRSGKFQSLGRFRNRVDLTGD 195
Query: 546 ----DNVLTIRYLNPERDPAMYQCRAKNQLKTRYSSAQLRVLTLKPSFKKRP 593
D + ++ + D +Y C + L V+ + P
Sbjct: 196 ISRNDGSIKLQTVKES-DQGIYTCSIYVGKLESRKTIVLHVVQDEFQRTISP 246
Score = 72.2 bits (176), Expect = 6e-14
Identities = 24/226 (10%), Positives = 54/226 (23%), Gaps = 54/226 (23%)
Query: 512 AFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQ-----------------DNVLTIRYL 554
W + + ++ L + D L ++ +
Sbjct: 32 TEEKHVDRVDWLFSKDKDDASEYVLFYYSNLSVPTGRFQNRSHLVGDTFHNDGSLLLQDV 91
Query: 555 NPERDPAMYQCRAKNQLKTRYSSAQLRVLTLKPSFKKRPLESETYAGEGGNVTIFCNPEA 614
D +Y C + + ++ + + L + G + C+ ++
Sbjct: 92 QKA-DEGIYTCEIRLKNESMVMKKPVELWVLPEEPRD------LRVRVGDTTQMRCSIQS 144
Query: 615 APKPKFV---WKKDG---------------------NIIGSGGRRKIF------ENGNLL 644
+ + W +G R +G++
Sbjct: 145 TEEKRVTKVNWMFSSGSHTEEETVLSYDSNMRSGKFQSLGRFRNRVDLTGDISRNDGSIK 204
Query: 645 ISPVSRDDSGIYSCTATNVHGMDESKGRLIVLHGPSYYEQLPPKIT 690
+ V D GIY+C+ L V+ P T
Sbjct: 205 LQTVKESDQGIYTCSIYVGKLESRKTIVLHVVQDEFQRTISPTPPT 250
Score = 62.6 bits (151), Expect = 1e-10
Identities = 33/207 (15%), Positives = 61/207 (29%), Gaps = 50/207 (24%)
Query: 324 PGVNYYWARDYFPNFVEEDKRVFV----SYDGALYFSALEQIDAGNYSCNVQSKVSDTGR 379
V +Y++ P +++ V DG+L +++ D G Y+C ++ K ++
Sbjct: 53 EYVLFYYSNLSVPTGRFQNRSHLVGDTFHNDGSLLLQDVQKADEGIYTCEIRLKN-ESMV 111
Query: 380 NGPFFPLKVFPHSNFQQLKFPNNFPKTFPEAPKAGDKVRLECVAFGYPVP---SYNWTRR 436
L V P + GD ++ C NW
Sbjct: 112 MKKPVELWVLPEEPRDL-------------RVRVGDTTQMRCSIQSTEEKRVTKVNWMFS 158
Query: 437 GSPLPRNAYFENF----------------NRI------------LTIPNVKVEDQGEYIC 468
++ NR+ + + VK DQG Y C
Sbjct: 159 SGSHTEEETVLSYDSNMRSGKFQSLGRFRNRVDLTGDISRNDGSIKLQTVKESDQGIYTC 218
Query: 469 RASNDRSALESSVTIS-IQAEPNFTIP 494
+ ++ + +Q E TI
Sbjct: 219 SIYVGKLESRKTIVLHVVQDEFQRTIS 245
Score = 50.3 bits (119), Expect = 1e-06
Identities = 26/200 (13%), Positives = 58/200 (29%), Gaps = 39/200 (19%)
Query: 686 PPKITIAAHRNLQLRCSAHTEELLDVAYI-WTHNGVRIGNMDLNELETPNINIDGGL--- 741
P++ + ++ + C E V + W + + + N+++ G
Sbjct: 12 SPQLRVHVGESVLMGCVVQRTEEKHVDRVDWLFSKDKDDASEYVLFYYSNLSVPTGRFQN 71
Query: 742 --------------LEITNASFADAGEYECVVKSTVGKISTKTTVIVEGPPGLPGGVQVV 787
L + + AD G Y C ++ + K V + P P ++V
Sbjct: 72 RSHLVGDTFHNDGSLLLQDVQKADEGIYTCEIRLKNESMVMKKPVELWVLPEEPRDLRVR 131
Query: 788 EVHKTS-------------ATIQWTDGATNGRP---ITHYKIIARTNWNSTWFNVSEHVI 831
T + W + + + Y R+ + V
Sbjct: 132 VGDTTQMRCSIQSTEEKRVTKVNWMFSSGSHTEEETVLSYDSNMRSGKFQSLGRFRNRV- 190
Query: 832 GKEVDRYTGRKEAS--IENV 849
++ R + S ++ V
Sbjct: 191 --DLTGDISRNDGSIKLQTV 208
Score = 46.4 bits (109), Expect = 2e-05
Identities = 31/224 (13%), Positives = 63/224 (28%), Gaps = 48/224 (21%)
Query: 190 PYFIKQPTDVVFDLSKRSILNDITLSCY---AGGYPNPSYEWFKEDYVQDRLVANLI--- 243
P + + + + C +W D L
Sbjct: 6 PGLTVSSPQLRVHVG-----ESVLMGCVVQRTEEKHVDRVDWLFSKDKDDASEYVLFYYS 60
Query: 244 -DPLSDKRF----------TLSGGNLIINDPRQVEDRGSYHCKASNKFGSIISE-SVQLA 291
+ RF + G+L++ D Q D G Y C+ K S++ + V+L
Sbjct: 61 NLSVPTGRFQNRSHLVGDTFHNDGSLLLQDV-QKADEGIYTCEIRLKNESMVMKKPVELW 119
Query: 292 ---------FGFIGE-------FNLKRAPEIGNQNWGKAMFCDPP-------TNYPGVNY 328
+G+ + NW + +
Sbjct: 120 VLPEEPRDLRVRVGDTTQMRCSIQSTEEKRVTKVNWMFSSGSHTEEETVLSYDSNMRSGK 179
Query: 329 YWARDYFPNFVEEDKRVFVSYDGALYFSALEQIDAGNYSCNVQS 372
+ + F N V+ + DG++ +++ D G Y+C++
Sbjct: 180 FQSLGRFRNRVDLTGDI-SRNDGSIKLQTVKESDQGIYTCSIYV 222
Score = 39.5 bits (91), Expect = 0.003
Identities = 12/101 (11%), Positives = 22/101 (21%), Gaps = 23/101 (22%)
Query: 211 DITLSCYAGGYPNP---SYEWFKEDYVQDRLVANLI------------DPLSDKRFTLSG 255
+ C W L R L+G
Sbjct: 135 TTQMRCSIQSTEEKRVTKVNWMFSSGSHTEEETVLSYDSNMRSGKFQSLGRFRNRVDLTG 194
Query: 256 ------GNLIINDPRQVEDRGSYHCKASNKFGSIISESVQL 290
G++ + + D+G Y C +++ L
Sbjct: 195 DISRNDGSIKLQTV-KESDQGIYTCSIYVGKLE-SRKTIVL 233
>2e7c_A Myosin-binding protein C, fast-type; IG-like domain, fast MYBP-C,
C-protein, skeletal muscle fast-isoform, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 118
Score = 77.4 bits (191), Expect = 3e-17
Identities = 21/114 (18%), Positives = 40/114 (35%), Gaps = 5/114 (4%)
Query: 567 AKNQLKTRYSSAQLRVLTLKPSFKK-RPLESETYAGEGGNVTIFCNPEAAPKPKFVWKKD 625
+ T +R + P + R L G + + + P+P+ VW K
Sbjct: 2 SSGSSGTLAQPVTIREIAEPPKIRLPRHLRQTYIRKVGEQLNLVVPFQGKPRPQVVWTKG 61
Query: 626 GNIIGSGGRRKIFENGN---LLISPVSRDDSGIYSCTATNVHGMDESKGRLIVL 676
G + R + + + +R DSG Y + + D + R+ V+
Sbjct: 62 GAPL-DTSRVHVRTSDFDTVFFVRQAARSDSGEYELSVQIENMKDTATIRIRVV 114
Score = 73.2 bits (180), Expect = 1e-15
Identities = 17/81 (20%), Positives = 33/81 (40%), Gaps = 3/81 (3%)
Query: 412 KAGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAY---FENFNRILTIPNVKVEDQGEYIC 468
K G+++ L G P P WT+ G+PL + +F+ + + D GEY
Sbjct: 37 KVGEQLNLVVPFQGKPRPQVVWTKGGAPLDTSRVHVRTSDFDTVFFVRQAARSDSGEYEL 96
Query: 469 RASNDRSALESSVTISIQAEP 489
+ +++ I + +
Sbjct: 97 SVQIENMKDTATIRIRVVEKA 117
Score = 57.4 bits (139), Expect = 4e-10
Identities = 23/108 (21%), Positives = 38/108 (35%), Gaps = 24/108 (22%)
Query: 686 PPKITIAAH----------RNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNI 735
PPKI + H L L + V +WT G L+T +
Sbjct: 21 PPKIRLPRHLRQTYIRKVGEQLNLVVPFQGKPRPQV--VWTKGGA--------PLDTSRV 70
Query: 736 NI----DGGLLEITNASFADAGEYECVVKSTVGKISTKTTVIVEGPPG 779
++ + + A+ +D+GEYE V+ K + + V G
Sbjct: 71 HVRTSDFDTVFFVRQAARSDSGEYELSVQIENMKDTATIRIRVVEKAG 118
Score = 51.6 bits (124), Expect = 4e-08
Identities = 23/121 (19%), Positives = 41/121 (33%), Gaps = 15/121 (12%)
Query: 470 ASNDRSALESSVTI-SIQAEPNFTIPLTDKHMDNQA------DLTWTCEAFGVPDVTYSW 522
+S L VTI I P +P +H+ L G P W
Sbjct: 2 SSGSSGTLAQPVTIREIAEPPKIRLP---RHLRQTYIRKVGEQLNLVVPFQGKPRPQVVW 58
Query: 523 FRNGELLNSETLPLEDQDRYFIQDNVLTIRYLNPERDPAMYQCRAKNQLKTRYSSAQLRV 582
+ G L++ + + D D V +R D Y+ + + ++ ++RV
Sbjct: 59 TKGGAPLDTSRVHVRTSD----FDTVFFVRQAARS-DSGEYELSVQIENMKDTATIRIRV 113
Query: 583 L 583
+
Sbjct: 114 V 114
Score = 51.2 bits (123), Expect = 5e-08
Identities = 12/78 (15%), Positives = 16/78 (20%), Gaps = 16/78 (20%)
Query: 210 NDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLS----GGNLIINDPRQ 265
+ L G P P W K PL R + +
Sbjct: 40 EQLNLVVPFQGKPRPQVVWTKGG-----------APLDTSRVHVRTSDFDTVFFVRQA-A 87
Query: 266 VEDRGSYHCKASNKFGSI 283
D G Y +
Sbjct: 88 RSDSGEYELSVQIENMKD 105
>2yuv_A Myosin-binding protein C, SLOW-type; SLOW-type myosin-binding
protein C, immunoglobulin domain, structural genomics,
NPPSFA; NMR {Homo sapiens} PDB: 2yxm_A
Length = 100
Score = 76.7 bits (189), Expect = 4e-17
Identities = 26/98 (26%), Positives = 35/98 (35%), Gaps = 9/98 (9%)
Query: 586 KPSFKKRPLESETYAGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGN--- 642
+F K L+ +GG V A PK + W K+G I + G
Sbjct: 7 GAAFAK-ILDPAYQVDKGGRVRFVVEL-ADPKLEVKWYKNGQEIRPSTKYIFEHKGCQRI 64
Query: 643 LLISPVSRDDSGIYSCTATNVHGMDESKGRLIVLHGPS 680
L I+ D Y TA G ++ L V GPS
Sbjct: 65 LFINNCQMTDDSEYYVTA----GDEKCSTELFVRSGPS 98
Score = 60.5 bits (147), Expect = 2e-11
Identities = 20/97 (20%), Positives = 37/97 (38%), Gaps = 11/97 (11%)
Query: 400 PNNFPKTFPEAPKA--GDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYF----ENFNRIL 453
F K A + G +VR P W + G + + + + RIL
Sbjct: 7 GAAFAKILDPAYQVDKGGRVRFVVEL-ADPKLEVKWYKNGQEIRPSTKYIFEHKGCQRIL 65
Query: 454 TIPNVKVEDQGEYICRASNDRSALESSVTISIQAEPN 490
I N ++ D EY A +++ S + +++ P+
Sbjct: 66 FINNCQMTDDSEYYVTAGDEK----CSTELFVRSGPS 98
Score = 53.9 bits (130), Expect = 4e-09
Identities = 18/105 (17%), Positives = 27/105 (25%), Gaps = 18/105 (17%)
Query: 678 GPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINI 737
G ++ + L P + ++ + W NG I +
Sbjct: 7 GAAFAKILDPAYQVDKGGRVRFVVELADP---KLEVKWYKNGQEIR-------PSTKYIF 56
Query: 738 --DGGL--LEITNASFADAGEYECVVKSTVGKISTKTTVIVEGPP 778
G L I N D EY G T + V P
Sbjct: 57 EHKGCQRILFINNCQMTDDSEYYVT----AGDEKCSTELFVRSGP 97
Score = 49.7 bits (119), Expect = 1e-07
Identities = 17/105 (16%), Positives = 35/105 (33%), Gaps = 18/105 (17%)
Query: 489 PNFTIPLTDKHMDNQ-ADLTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQDN 547
F L + ++ + + E P + W++NG+ + +Y +
Sbjct: 8 AAFAKILDPAYQVDKGGRVRFVVEL-ADPKLEVKWYKNGQ-------EIRPSTKYIFEHK 59
Query: 548 ----VLTIRYLNPERDPAMYQCRAKNQLKTRYSSAQLRVLTLKPS 588
+L I D + Y A ++ S +L V + S
Sbjct: 60 GCQRILFINNCQMT-DDSEYYVTAGDEK----CSTELFVRSGPSS 99
Score = 38.5 bits (90), Expect = 0.001
Identities = 19/96 (19%), Positives = 29/96 (30%), Gaps = 16/96 (16%)
Query: 189 GPYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSD 248
G F K + K + P +W+K I P +
Sbjct: 7 GAAFAKILDPAY-QVDKGG---RVRFVVELAD-PKLEVKWYKNG--------QEIRPSTK 53
Query: 249 KRFTLSGGN--LIINDPRQVEDRGSYHCKASNKFGS 282
F G L IN+ Q+ D Y+ A ++ S
Sbjct: 54 YIFEHKGCQRILFINNC-QMTDDSEYYVTAGDEKCS 88
Score = 29.3 bits (66), Expect = 2.0
Identities = 7/59 (11%), Positives = 17/59 (28%), Gaps = 5/59 (8%)
Query: 322 NYPGVNYYWARDYFPNFVEEDKRVFVSYDGA---LYFSALEQIDAGNYSCNVQSKVSDT 377
P + W ++ + + + G L+ + + D Y + T
Sbjct: 33 ADPKLEVKWYKNGQE--IRPSTKYIFEHKGCQRILFINNCQMTDDSEYYVTAGDEKCST 89
>2gee_A Hypothetical protein; fibronectin, EIIIB, cancer,
neovascularization, cell adhesion, protein binding,
oncoprotein; 2.01A {Homo sapiens} PDB: 2fnb_A
Length = 203
Score = 79.9 bits (197), Expect = 4e-17
Identities = 34/219 (15%), Positives = 68/219 (31%), Gaps = 38/219 (17%)
Query: 767 STKTTVIVEGPPGLPGGVQVVEVHKTSATIQWTDGATNGRPITHYKIIARTNWNSTWFNV 826
S P + V++ +S ++WT N I Y+I T
Sbjct: 12 SGLVPRGSHMEVPQPTDLSFVDITDSSIGLRWT--PLNSSTIIGYRI--------TVVAA 61
Query: 827 SEHVIGKEVDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPSPQYNTPADKPY 886
E + E + ++ L P Y+ V G P++ + Q T
Sbjct: 62 GEGIPIFEDFVDSSVGYYTVTG-LEPGIDYDISVYTVKNGGESTPTTLTQQ--TAVP--- 115
Query: 887 QAPSRIGGGGGKIGDLS-----ISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETLKEY 941
P+ + + ++ ++W P P + + + + + E +E
Sbjct: 116 -PPTDL-----RFTNIGPDTMRVTWAPPP----SIDLTNFLVRYSPVKNEEDVAELSIS- 164
Query: 942 GNVGIAVVR--IPSEFYYTEYEVKVQAINDVGPGPESEV 978
+ V+ +P TEY V V ++ +
Sbjct: 165 PSDNAVVLTNLLP----GTEYVVSVSSVYEQHESTPLRG 199
Score = 61.4 bits (149), Expect = 9e-11
Identities = 21/121 (17%), Positives = 41/121 (33%), Gaps = 12/121 (9%)
Query: 754 EYECVVKS-TVGKISTKTTVIVEGPPGLPGGVQVVEVHKTSATIQWTDGATNGRPITHYK 812
+Y+ V + G ST TT+ + P ++ + + + W +T++
Sbjct: 89 DYDISVYTVKNGGESTPTTLTQQTAVPPPTDLRFTNIGPDTMRVTWAPPP--SIDLTNFL 146
Query: 813 IIARTNWNSTWFNVSEHVIGKEVDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPS 872
+ N V+E I + + N L+P + Y V + E P
Sbjct: 147 VRYSPVKNEED--VAELSISPSDNAVV------LTN-LLPGTEYVVSVSSVYEQHESTPL 197
Query: 873 S 873
Sbjct: 198 R 198
Score = 46.4 bits (110), Expect = 1e-05
Identities = 20/123 (16%), Positives = 42/123 (34%), Gaps = 23/123 (18%)
Query: 863 GNELGYGEPSSPSPQYNTPADKPYQAPSRIGGGGGKIGDLS-----ISWEPLPREKQNAP 917
G+ + SS + + P P+ + D++ + W PL ++
Sbjct: 2 GSSHHHHHHSSGLVPRGSHMEVP--QPTDL-----SFVDITDSSIGLRWTPLN----SST 50
Query: 918 NIYYKIFWRKKNDTEFQSETLKEYGNVGIAVVR--IPSEFYYTEYEVKVQAINDVGPGPE 975
I Y+I + E + +VG V P +Y++ V + + G
Sbjct: 51 IIGYRITVVAAGEGIPIFEDFVD-SSVGYYTVTGLEP----GIDYDISVYTVKNGGESTP 105
Query: 976 SEV 978
+ +
Sbjct: 106 TTL 108
>2ckn_A Basic fibroblast growth factor receptor 1; kinase, transferase,
heparin-binding, nucleotide-binding, immunoglobulin
domain, alternatice splicing; NMR {Mus musculus}
Length = 95
Score = 75.6 bits (186), Expect = 7e-17
Identities = 18/87 (20%), Positives = 31/87 (35%), Gaps = 6/87 (6%)
Query: 404 PKTFPEAP-----KAGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYFENFNRILTIPNV 458
P P GD ++L C V S NW R G L + + + +
Sbjct: 9 PWGVPVEVESLLVHPGDLLQLRCRLRD-DVQSINWLRDGVQLVESNRTRITGEEVEVRDS 67
Query: 459 KVEDQGEYICRASNDRSALESSVTISI 485
D G Y C S+ + + ++++
Sbjct: 68 IPADSGLYACVTSSPSGSDTTYFSVNV 94
Score = 73.7 bits (181), Expect = 4e-16
Identities = 18/90 (20%), Positives = 33/90 (36%), Gaps = 3/90 (3%)
Query: 586 KPSFKKRPLESETYAGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGNLLI 645
+P +ES G + + C W +DG + R +I + +
Sbjct: 8 QPWGVPVEVESLL-VHPGDLLQLRCRLRDDV-QSINWLRDGVQLVESNRTRI-TGEEVEV 64
Query: 646 SPVSRDDSGIYSCTATNVHGMDESKGRLIV 675
DSG+Y+C ++ G D + + V
Sbjct: 65 RDSIPADSGLYACVTSSPSGSDTTYFSVNV 94
Score = 63.7 bits (155), Expect = 1e-12
Identities = 24/96 (25%), Positives = 39/96 (40%), Gaps = 10/96 (10%)
Query: 679 PSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINID 738
P + + LQLRC + + W +GV++ E+ I
Sbjct: 9 PWGVPVEVESLLVHPGDLLQLRCRLRDDVQ---SINWLRDGVQLV-------ESNRTRIT 58
Query: 739 GGLLEITNASFADAGEYECVVKSTVGKISTKTTVIV 774
G +E+ ++ AD+G Y CV S G +T +V V
Sbjct: 59 GEEVEVRDSIPADSGLYACVTSSPSGSDTTYFSVNV 94
Score = 57.9 bits (140), Expect = 1e-10
Identities = 15/95 (15%), Positives = 27/95 (28%), Gaps = 19/95 (20%)
Query: 190 PYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPL-SD 248
+ ++ + + L C S W ++ L
Sbjct: 10 WGVPVEVESLLVHPG-----DLLQLRCRLRDDV-QSINWLRDG-----------VQLVES 52
Query: 249 KRFTLSGGNLIINDPRQVEDRGSYHCKASNKFGSI 283
R ++G + + D D G Y C S+ GS
Sbjct: 53 NRTRITGEEVEVRDS-IPADSGLYACVTSSPSGSD 86
Score = 54.8 bits (132), Expect = 1e-09
Identities = 14/99 (14%), Positives = 29/99 (29%), Gaps = 9/99 (9%)
Query: 484 SIQAEPNFTIPLTDKHMDNQADLTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYF 543
+ + + L C + +W R+G L + +R
Sbjct: 5 EQAQPWGVPVEVESLLVHPGDLLQLRCRLRD-DVQSINWLRDGV-------QLVESNRTR 56
Query: 544 IQDNVLTIRYLNPERDPAMYQCRAKNQLKTRYSSAQLRV 582
I + +R P D +Y C + + + + V
Sbjct: 57 ITGEEVEVRDSIPA-DSGLYACVTSSPSGSDTTYFSVNV 94
Score = 27.5 bits (61), Expect = 7.0
Identities = 10/45 (22%), Positives = 16/45 (35%), Gaps = 3/45 (6%)
Query: 330 WARDYFPNFVEEDKRVFVSYDGALYFSALEQIDAGNYSCNVQSKV 374
W RD + E R ++ + D+G Y+C S
Sbjct: 42 WLRDGVQ--LVESNRTRIT-GEEVEVRDSIPADSGLYACVTSSPS 83
>2haz_A N-CAM 1, neural cell adhesion molecule 1; fibronectin type III
repeat, FN1, beta sandwich; 1.70A {Homo sapiens} SCOP:
b.1.2.1
Length = 105
Score = 75.9 bits (187), Expect = 8e-17
Identities = 31/111 (27%), Positives = 47/111 (42%), Gaps = 19/111 (17%)
Query: 776 GPPGLPGGVQVVEVHKTSATIQWTD-GATNGRPITHYKIIART----NWNSTWFNVSEHV 830
P + VE + ++A +Q+ + AT G PI YK R W+S W++ E
Sbjct: 8 SSPSID----QVEPYSSTAQVQFDEPEATGGVPILKYKAEWRAVGEEVWHSKWYDAKEAS 63
Query: 831 IGKEVDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPSPQYNTP 881
+ V +I L P +TY ++ A N G GE S+ S P
Sbjct: 64 MEGIV---------TIVG-LKPETTYAVRLAALNGKGLGEISAASEFKTQP 104
Score = 48.9 bits (117), Expect = 3e-07
Identities = 21/99 (21%), Positives = 34/99 (34%), Gaps = 3/99 (3%)
Query: 880 TPADKPYQAPSRIGGGGGKIGDLSISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETLK 939
+ D P +PS + ++ P P + YK WR + + S+
Sbjct: 2 SHMDTP-SSPSIDQVEPYS-STAQVQFDE-PEATGGVPILKYKAEWRAVGEEVWHSKWYD 58
Query: 940 EYGNVGIAVVRIPSEFYYTEYEVKVQAINDVGPGPESEV 978
+V I T Y V++ A+N G G S
Sbjct: 59 AKEASMEGIVTIVGLKPETTYAVRLAALNGKGLGEISAA 97
>2crz_A Fibronectin type-III domain containing protein 3A; structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
b.1.2.1
Length = 110
Score = 75.8 bits (187), Expect = 9e-17
Identities = 25/114 (21%), Positives = 41/114 (35%), Gaps = 15/114 (13%)
Query: 775 EGPPGLPGGVQVV-EVHKTSATIQWTDGA-TNGRPITHYKIIARTNWNSTWFNVSEHVIG 832
GPPG ++ ++W G PI+ Y + V
Sbjct: 6 SGPPGPCLPPRLQGRPKAKEIQLRWGPPLVDGGSPISCYSVEMSPIEKDEPREV------ 59
Query: 833 KEVDRYTGRK-EASIENVLVPWSTYEFKVIAGNELGYGEPSSPSPQYNTPADKP 885
Y G + E ++ + L+P TY F++ A N++G+G S P P
Sbjct: 60 -----YQGSEVECTVSS-LLPGKTYSFRLRAANKMGFGPFSEKCDITTAPGSGP 107
Score = 41.2 bits (97), Expect = 2e-04
Identities = 15/84 (17%), Positives = 25/84 (29%), Gaps = 20/84 (23%)
Query: 902 LSISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETLKEYGNVGIAVVRIPSEFY----- 956
+ + W P P +P Y + E + V +
Sbjct: 26 IQLRWGP-PLVDGGSPISCYSVEMSPIEKDEPR------------EVYQGSEVECTVSSL 72
Query: 957 --YTEYEVKVQAINDVGPGPESEV 978
Y +++A N +G GP SE
Sbjct: 73 LPGKTYSFRLRAANKMGFGPFSEK 96
>3e0g_A Leukemia inhibitory factor receptor; IG domain, cytokine binding
homology region (CHR), cell MEMB disease mutation,
glycoprotein, membrane; HET: NAG MAN FUC; 3.10A {Homo
sapiens}
Length = 483
Score = 82.6 bits (203), Expect = 1e-16
Identities = 46/314 (14%), Positives = 85/314 (27%), Gaps = 32/314 (10%)
Query: 667 DESKGRLIVLHGPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMD 726
D S + I S + P I ++ C + ++ +
Sbjct: 186 DWSPVKQISWIPDSQTKVFPQDKVILVGSDITFCCVSQE---------------KVLSAL 230
Query: 727 LNELETPNINIDGGLLEITNASFADAGEYECVVKSTVGKISTKTTVIVEGPPGLPGGVQV 786
+ P I++DG + I + + + V T T + PP P +
Sbjct: 231 IGHTNCPLIHLDGENVAIKIRNISVSASSGTNVVFTTEDNIFGTVIFAGYPPDTPQQLNC 290
Query: 787 VEVHKTSATIQWT---DGATNGRPITHYKIIARTNWNSTWFNVSEHVIGKEVDRYTGRKE 843
W A G T Y ++ + +E +
Sbjct: 291 ETHDLKEIICSWNPGRVTALVGPRATSYTLVESFSGKYVRLKRAEAPTNESYQLLF---- 346
Query: 844 ASIENVLVPWSTYEFKVIAGNELGYGEPSSPSPQYNTPADKPYQAPSRIGGGGGKIGDLS 903
+L Y F + A N LG S + N P+ +
Sbjct: 347 ----QMLPNQEIYNFTLNAHNPLG---RSQSTILVNITEKVYPHTPTSFKVKDINSTAVK 399
Query: 904 ISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETLKEYGNVGIAVVRIPSEFYYTEYEVK 963
+SW N +I +K N + Q + +V + YT Y +
Sbjct: 400 LSWHLPG--NFAKINFLCEIEIKKSNSVQEQRNVTIQGVENSSYLVALDKLNPYTLYTFR 457
Query: 964 VQAINDVGPGPESE 977
++ + S+
Sbjct: 458 IRCSTE-TFWKWSK 470
Score = 68.3 bits (166), Expect = 5e-12
Identities = 49/450 (10%), Positives = 124/450 (27%), Gaps = 49/450 (10%)
Query: 454 TIPNVKVEDQGEYICRASNDRSALESSVTISIQAEPNFTIPLT--DKHMDNQAD-----L 506
T + G+Y ++ S+ ++ + IP T + L
Sbjct: 45 TSIKIPALSHGDYEITINSLHDFGSSTSKFTLNEQNVSLIPDTPEILQLSADFSTSTLYL 104
Query: 507 TWTCEAFGVP-------DVTYSWFRNGELLNSETLPLEDQDRYFIQD-NVLTIRYLNPER 558
W P ++ + EL+ T + + + + L
Sbjct: 105 KWNDRGSVFPHRSNVIWEIKVLRKESMELVKLVTHQTTLNGKDTLHHWSWASDMPLECAI 164
Query: 559 DPAMYQCRAKNQLKTRYSS----AQLRVLTLKPSFKKRPLESETYAGEGGNVTIFCNPEA 614
+C N + + ++ ++ P + + + G ++T C +
Sbjct: 165 HFVEIRCYIDNLHFSGLEEWSDWSPVKQISWIPDSQTKVFPQDKVILVGSDITFCCVSQE 224
Query: 615 APKPKFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTATNVHGMDESKGRLI 674
+ + +I G + N+ +S S + + T N+ G
Sbjct: 225 KVLSALIGHTNCPLIHLDGENVAIKIRNISVSASS--GTNVVFTTEDNIFGTV------- 275
Query: 675 VLHGPSYYEQLPPKITIAAHRNLQLRCS------AHTEELLDVAYIWTHNGVRIGNMDLN 728
Y P ++ H ++ CS +Y +
Sbjct: 276 --IFAGYPPDTPQQLNCETHDLKEIICSWNPGRVTALVGPRATSYTLVE---SFSGKYVR 330
Query: 729 ELETPNINIDGGLLEITNASFADAGEYECVVKSTVGKISTKTTVIV--EGPPGLPGGVQV 786
+ L + + + +G+ + V + + P P +V
Sbjct: 331 LKRAEAPTNESYQLLFQMLPNQEIYNFTLNAHNPLGRSQSTILVNITEKVYPHTPTSFKV 390
Query: 787 VEVHKTSATIQWTDGATNGRPITHYKIIARTNWNSTWFNVSEHVIGKEVDRYTGRKEASI 846
+++ T+ + W + +I + + + ++
Sbjct: 391 KDINSTAVKLSWHLPGNFAKINFLCEIEIKKSNSVQEQRNVT-----IQGVENSSYLVAL 445
Query: 847 ENVLVPWSTYEFKVIAGNELGY--GEPSSP 874
+ L P++ Y F++ E + + S+
Sbjct: 446 DK-LNPYTLYTFRIRCSTETFWKWSKWSNK 474
Score = 39.1 bits (90), Expect = 0.008
Identities = 45/342 (13%), Positives = 90/342 (26%), Gaps = 28/342 (8%)
Query: 648 VSRDDSGIYSCTATNVHGMDESKGRLIVLHGPSYYEQLPPKI----TIAAHRNLQLRCSA 703
+ G Y T ++H S + + P+I + L L+ +
Sbjct: 49 IPALSHGDYEITINSLHDFGSSTSKFTLNEQNVSLIPDTPEILQLSADFSTSTLYLKWND 108
Query: 704 H-TEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEITNASFADAGEYECVVKST 762
+ IW +R +M+L +L T ++G + + S+A EC +
Sbjct: 109 RGSVFPHRSNVIWEIKVLRKESMELVKLVTHQTTLNGKDT-LHHWSWASDMPLECAIHFV 167
Query: 763 VGKISTKTTVIVEGPPGLPGGVQVVEVHKTSATIQWTDGATN-----GRPITHYKIIART 817
+I + V+ Q + G IT +
Sbjct: 168 --EIRCYIDNLHFSGLEEWSDWSPVKQISWIPDSQTKVFPQDKVILVGSDITFCCVSQEK 225
Query: 818 NWNSTWFNVSEHVIGKEVDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPSPQ 877
++ + + +I G A + ++ V+ E
Sbjct: 226 VLSALIGHTNCPLI-----HLDGENVAIKIRNISVSASSGTNVVFTTEDNIFGTV----- 275
Query: 878 YNTPADKPYQAPSRIGGGGGKIGDLSISWEPLPREKQNAPNI-YYKIFWRKKNDTEFQSE 936
A P P ++ + ++ SW P P Y +
Sbjct: 276 --IFAGYPPDTPQQLNCETHDLKEIICSWNPGRVTALVGPRATSYTLVESFSGKYVRLKR 333
Query: 937 TLKEYGNVGIAVVRIPSEFYYTEYEVKVQAINDVGPGPESEV 978
E + Y + A N +G + +
Sbjct: 334 A--EAPTNESYQLLFQMLPNQEIYNFTLNAHNPLGRSQSTIL 373
Score = 34.8 bits (79), Expect = 0.16
Identities = 29/281 (10%), Positives = 82/281 (29%), Gaps = 26/281 (9%)
Query: 318 DPPTNYP-GVNYYWARDYFPN------FVEEDKRVFVSYDGALY--FSALEQIDAGNYSC 368
D + +P N W + + D + +++ ++ +
Sbjct: 108 DRGSVFPHRSNVIWEIKVLRKESMELVKLVTHQTTLNGKDTLHHWSWASDMPLECAIHFV 167
Query: 369 NVQSKVSDTGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPEAP--KAGDKVRLECVAFGY 426
++ + + +G P + P++ K FP+ G + CV+
Sbjct: 168 EIRCYIDNLHFSGLEEWSDWSPVKQISWI--PDSQTKVFPQDKVILVGSDITFCCVSQEK 225
Query: 427 PVPSYNWTRRGSPLPRNAYFENFNRILTIPNVKVEDQGEYICRASNDRSALESSVTISIQ 486
+ + + + + N + I N+ V + + + + +
Sbjct: 226 VLSALIGHTNCPLI----HLDGENVAIKIRNISVSASSGTNVVFTTEDNIFGTVIFAGYP 281
Query: 487 AEPNFTIPLTDKHMDNQADLTWTCEAF----GVPDVTYSWFRNGELLNSETLPLEDQDRY 542
+ + + +W G +Y+ E + + + L+ +
Sbjct: 282 PDTPQQLNCETHDLKE-IICSWNPGRVTALVGPRATSYTLV---ESFSGKYVRLKRAEAP 337
Query: 543 FIQDNVLTIRYLNPERDPAMYQCRAKNQLKTRYSSAQLRVL 583
+ L + L + + + A N L S+ + +
Sbjct: 338 TNESYQLLFQMLPNQ-EIYNFTLNAHNPLGRSQSTILVNIT 377
>2ed9_A Netrin receptor DCC; tumor suppressor protein DCC, colorectal
cancer suppressor, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 124
Score = 75.8 bits (187), Expect = 2e-16
Identities = 29/120 (24%), Positives = 40/120 (33%), Gaps = 6/120 (5%)
Query: 859 KVIAGNELGYGEPSSPSPQYNTPADKPYQAPSRIGGGGGKIGDLSISWEPLPREKQNAPN 918
+GN G G + T +D P P + + +SW P P QN
Sbjct: 3 SGSSGNRYGPGVSTDDITVV-TLSDVPSAPPQNVSLEVVNSRSIKVSWLPPPSGTQNGFI 61
Query: 919 IYYKIFWRKKNDTEFQSETLKEYGNVGIAVVRIPSEFYYTEYEVKVQAINDVGPGPESEV 978
YKI RK + ETL ++Y +V A+ G GP S
Sbjct: 62 TGYKIRHRK-TTRRGEMETL----EPNNLWYLFTGLEKGSQYSFQVSAMTVNGTGPPSNW 116
Score = 47.7 bits (114), Expect = 1e-06
Identities = 26/101 (25%), Positives = 32/101 (31%), Gaps = 15/101 (14%)
Query: 777 PPGLPGGVQVVEVHKTSATIQWT---DGATNGRPITHYKIIARTNWNSTWFNVSEHVIGK 833
P P V + V+ S + W G NG IT YKI R G+
Sbjct: 28 PSAPPQNVSLEVVNSRSIKVSWLPPPSGTQNGF-ITGYKIRHRKTTRR----------GE 76
Query: 834 EVDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSP 874
L S Y F+V A G G PS+
Sbjct: 77 METLEPNNLWYLFTG-LEKGSQYSFQVSAMTVNGTGPPSNW 116
Score = 31.1 bits (71), Expect = 0.60
Identities = 4/17 (23%), Positives = 7/17 (41%)
Query: 962 VKVQAINDVGPGPESEV 978
+ N GPG ++
Sbjct: 2 SSGSSGNRYGPGVSTDD 18
>3caf_A Fibroblast growth factor receptor 2; FGFR2, D2, ATP-binding,
disease MU ectodermal dysplasia, glycoprotein,
heparin-binding, immuno domain, kinase; 1.96A {Homo
sapiens} PDB: 3cu1_A* 3euu_A 3dar_A 1wvz_A
Length = 100
Score = 74.8 bits (184), Expect = 2e-16
Identities = 19/96 (19%), Positives = 32/96 (33%), Gaps = 6/96 (6%)
Query: 587 PSFKK--RPLESETYAGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFE----N 640
P + + + V C P P W K+G R ++ +
Sbjct: 5 PYWTNTEKMEKRLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQH 64
Query: 641 GNLLISPVSRDDSGIYSCTATNVHGMDESKGRLIVL 676
+L++ V D G Y+C N +G L V+
Sbjct: 65 WSLIMESVVPSDKGNYTCVVENEYGSINHTYHLDVV 100
Score = 70.5 bits (173), Expect = 6e-15
Identities = 17/78 (21%), Positives = 33/78 (42%), Gaps = 5/78 (6%)
Query: 413 AGDKVRLECVAFGYPVPSYNWTRRGSPLPRNA-----YFENFNRILTIPNVKVEDQGEYI 467
A + V+ C A G P+P+ W + G + N + L + +V D+G Y
Sbjct: 22 AANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYT 81
Query: 468 CRASNDRSALESSVTISI 485
C N+ ++ + + +
Sbjct: 82 CVVENEYGSINHTYHLDV 99
Score = 67.1 bits (164), Expect = 1e-13
Identities = 20/104 (19%), Positives = 38/104 (36%), Gaps = 11/104 (10%)
Query: 486 QAEPNFTIPLTDKHMDNQA----DLTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDR 541
+ P +T + + + + C A G P T W +NG+ E
Sbjct: 2 KRAPYWTNTEKMEKRLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQE----HRIGG 57
Query: 542 YFIQDNV--LTIRYLNPERDPAMYQCRAKNQLKTRYSSAQLRVL 583
Y +++ L + + P D Y C +N+ + + L V+
Sbjct: 58 YKVRNQHWSLIMESVVPS-DKGNYTCVVENEYGSINHTYHLDVV 100
Score = 59.0 bits (143), Expect = 7e-11
Identities = 22/97 (22%), Positives = 35/97 (36%), Gaps = 7/97 (7%)
Query: 187 PRGPYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPL 246
R PY+ + + N + C AGG P P+ W K +
Sbjct: 2 KRAPYWTNTEKMEKRLHAVPA-ANTVKFRCPAGGNPMPTMRWLKNG---KEFKQE--HRI 55
Query: 247 SDKRFTLSGGNLIINDPRQVEDRGSYHCKASNKFGSI 283
+ +LI+ D+G+Y C N++GSI
Sbjct: 56 GGYKVRNQHWSLIMESV-VPSDKGNYTCVVENEYGSI 91
Score = 50.1 bits (120), Expect = 9e-08
Identities = 18/94 (19%), Positives = 30/94 (31%), Gaps = 14/94 (14%)
Query: 686 PPKITIAAHRNLQLRCSAH-----TEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGG 740
+ A ++ RC A T W NG + +
Sbjct: 15 KRLHAVPAANTVKFRCPAGGNPMPT-------MRWLKNGKEFKQEH--RIGGYKVRNQHW 65
Query: 741 LLEITNASFADAGEYECVVKSTVGKISTKTTVIV 774
L + + +D G Y CVV++ G I+ + V
Sbjct: 66 SLIMESVVPSDKGNYTCVVENEYGSINHTYHLDV 99
>1tdq_A Tenascin-R; extracellular matrix, lecticans, tenascins,
protein-protein interactions, C-type lectin domain;
2.60A {Rattus norvegicus} SCOP: b.1.2.1 b.1.2.1 b.1.2.1
Length = 283
Score = 79.5 bits (196), Expect = 3e-16
Identities = 35/218 (16%), Positives = 63/218 (28%), Gaps = 33/218 (15%)
Query: 764 GKISTKTTVIVEGPPGLPGGVQVVEVHKTSATIQWTDGATNGRPITHYKIIARTNWNSTW 823
G + V P + V +V T A ++WT + +
Sbjct: 4 GISGGGGGIPV---IDGPTQILVRDVSDTVAFVEWTPPRA---KVDFILLKYGLVGGEGG 57
Query: 824 FNVSEHVIGKEVDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPSPQYNTPAD 883
+ S++ L P S YE + A + SS T D
Sbjct: 58 K--------TTFRLQPPLSQYSVQA-LRPGSRYEVSISAVRGTNESDASSTQFT--TEID 106
Query: 884 KPYQAPSRIGGGGGKIGDLSISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETLKEY-G 942
AP + G L + W+ A YK+ + ++ + + G
Sbjct: 107 ----APKNLRVGSRTATSLDLEWDN-----SEAEAQEYKVVYSTLAGEQYHEVLVPKGIG 157
Query: 943 NVGIAVVR--IPSEFYYTEYEVKVQAINDVGPGPESEV 978
+ +P TEY V + A+ + + +
Sbjct: 158 PTTKTTLTDLVP----GTEYGVGISAVMNSKQSIPATM 191
Score = 78.3 bits (193), Expect = 7e-16
Identities = 37/239 (15%), Positives = 68/239 (28%), Gaps = 53/239 (22%)
Query: 754 EYECVVKS-TVGKISTKTTVIVEGPPGLPGGVQVVEVHKTSATIQWTDGATNGRPITHYK 812
YE + + S ++ P ++V TS ++W + YK
Sbjct: 80 RYEVSISAVRGTNESDASSTQFTTEIDAPKNLRVGSRTATSLDLEWD--NSEA-EAQEYK 136
Query: 813 IIARTNWNSTWFNVSEHVIGKEVDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPS 872
++ T + V + T + + LVP + Y + A P+
Sbjct: 137 VVYSTLAGEQYHEVLVPKGIGPTTKTT------LTD-LVPGTEYGVGISAVMNSKQSIPA 189
Query: 873 SPSPQYNTPADKPY------QAPSRIGGGGGKIGDLSISWEPLPREKQNAPNIYYKIFWR 926
+ + + T D P + + I S+ W + P +Y+I +
Sbjct: 190 TMNAR--TELDSPRDLMVTASSETSI----------SLIWTK-A----SGPIDHYRITFT 232
Query: 927 KKNDTEFQSETLKEYGNVGIAVVRIPSEFY-------YTEYEVKVQAINDVGPGPESEV 978
+ G V Y EY + + A ES V
Sbjct: 233 PSS------------GISSEVTVPRDRTSYTLTDLEPGAEYIISITAERGRQQSLESTV 279
Score = 63.7 bits (155), Expect = 5e-11
Identities = 36/185 (19%), Positives = 65/185 (35%), Gaps = 25/185 (13%)
Query: 698 QLRCSAHTEELLDVAYIWTH-----NGVRIGNMDLNELETPNINIDGGLLEITNASFAD- 751
LR + T LD+ W + ++ L + + + G+ T + D
Sbjct: 110 NLRVGSRTATSLDLE--WDNSEAEAQEYKVVYSTLAGEQYHEVLVPKGIGPTTKTTLTDL 167
Query: 752 -AG-EYECVVKS-TVGKISTKTTVIVEGPPGLPGGVQVVEVHKTSATIQWTDGATNGRPI 808
G EY + + K S T+ P + V +TS ++ WT +G PI
Sbjct: 168 VPGTEYGVGISAVMNSKQSIPATMNARTELDSPRDLMVTASSETSISLIWT--KASG-PI 224
Query: 809 THYKIIARTNWNSTWFNVSEHVIGKEVDRYTGRKEASIENVLVPWSTYEFKVIAGNELGY 868
HY+I + + E + ++ YT + + L P + Y + A
Sbjct: 225 DHYRITFTPSSGISS----EVTVPRDRTSYT------LTD-LEPGAEYIISITAERGRQQ 273
Query: 869 GEPSS 873
S+
Sbjct: 274 SLEST 278
>1wwb_X Protein (brain derived neurotrophic factor receptor TRKB); TRK
receptor, receptor tyrosine kinase, 3D-domain swapping,
transferase; 2.10A {Homo sapiens} SCOP: b.1.1.4 PDB:
1hcf_X
Length = 103
Score = 74.4 bits (183), Expect = 3e-16
Identities = 17/86 (19%), Positives = 30/86 (34%), Gaps = 8/86 (9%)
Query: 602 EGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKI--------FENGNLLISPVSRDDS 653
+ I + PKP W +G I+ +G L + + ++
Sbjct: 15 SDHHWCIPFTVKGNPKPALQWFYNGAILNESKYICTKIHVTNHTEYHGCLQLDNPTHMNN 74
Query: 654 GIYSCTATNVHGMDESKGRLIVLHGP 679
G Y+ A N +G DE + + P
Sbjct: 75 GDYTLIAKNEYGKDEKQISAHFMGWP 100
Score = 70.2 bits (172), Expect = 9e-15
Identities = 19/95 (20%), Positives = 33/95 (34%), Gaps = 9/95 (9%)
Query: 406 TFPEAPKAGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYFE---------NFNRILTIP 456
TF E+P + + G P P+ W G+ L + Y ++ L +
Sbjct: 8 TFLESPTSDHHWCIPFTVKGNPKPALQWFYNGAILNESKYICTKIHVTNHTEYHGCLQLD 67
Query: 457 NVKVEDQGEYICRASNDRSALESSVTISIQAEPNF 491
N + G+Y A N+ E ++ P
Sbjct: 68 NPTHMNNGDYTLIAKNEYGKDEKQISAHFMGWPGI 102
Score = 56.7 bits (137), Expect = 5e-10
Identities = 18/107 (16%), Positives = 34/107 (31%), Gaps = 18/107 (16%)
Query: 684 QLPPKIT----IAAHRNLQLRCSAHTEELLDVAY-----IWTHNGVRIGNMDLNELETPN 734
P IT + + + + W +NG + +
Sbjct: 2 HFAPTITFLESPTSDHHWCIPFTVK-------GNPKPALQWFYNGAILNESKYICTKIHV 54
Query: 735 INIDG--GLLEITNASFADAGEYECVVKSTVGKISTKTTVIVEGPPG 779
N G L++ N + + G+Y + K+ GK + + G PG
Sbjct: 55 TNHTEYHGCLQLDNPTHMNNGDYTLIAKNEYGKDEKQISAHFMGWPG 101
Score = 55.5 bits (134), Expect = 1e-09
Identities = 16/85 (18%), Positives = 33/85 (38%), Gaps = 7/85 (8%)
Query: 210 NDITLSCYAGGYPNPSYEWFKEDYV--QDRLVANLIDPLSDKRFTLSGGNLIINDPRQVE 267
+ + G P P+ +WF + + + + I + T G L +++P
Sbjct: 17 HHWCIPFTVKGNPKPALQWFYNGAILNESKYICTKIHVTNH---TEYHGCLQLDNPTH-M 72
Query: 268 DRGSYHCKASNKFGSIISESVQLAF 292
+ G Y A N++G + + F
Sbjct: 73 NNGDYTLIAKNEYGK-DEKQISAHF 96
Score = 49.0 bits (117), Expect = 2e-07
Identities = 13/83 (15%), Positives = 19/83 (22%), Gaps = 3/83 (3%)
Query: 503 QADLTWTCEAFGVPDVTYSWFRNGELLNSE--TLPLEDQDRYFIQDNVLTIRYLNPERDP 560
G P WF NG +LN + L + +
Sbjct: 16 DHHWCIPFTVKGNPKPALQWFYNGAILNESKYICTKIHVTNHTEYHGCLQLDNPTHM-NN 74
Query: 561 AMYQCRAKNQLKTRYSSAQLRVL 583
Y AKN+ +
Sbjct: 75 GDYTLIAKNEYGKDEKQISAHFM 97
>2yrz_A Integrin beta-4; GP150, CD104 antigen, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 118
Score = 74.4 bits (183), Expect = 4e-16
Identities = 18/122 (14%), Positives = 40/122 (32%), Gaps = 10/122 (8%)
Query: 767 STKTTVIVEGPPGLPGGVQVVEVHKTSATIQWTDGATNGRPITHYKIIARTNWNSTWFNV 826
+ + + G P P + + TS + W + P+ Y + + +
Sbjct: 7 GSHDSRLTAGVPDTPTRLVFSALGPTSLRVSWQEPRCER-PLQGYSVEYQLLNGGELHRL 65
Query: 827 SEHVIGKEVDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPSPQYNTPADKPY 886
+ + +E+ L+P +Y F+V A ++ G+G + P
Sbjct: 66 NIPNPAQT--SVV------VED-LLPNHSYVFRVRAQSQEGWGREREGVITIESQVSGPS 116
Query: 887 QA 888
Sbjct: 117 SG 118
Score = 48.9 bits (117), Expect = 3e-07
Identities = 23/120 (19%), Positives = 37/120 (30%), Gaps = 33/120 (27%)
Query: 871 PSSPSPQYNTPADKPYQAPSRIGGGGGKIGDLS-----ISWEPLPREKQNAPNIYYKIFW 925
SS S A P P+R+ L +SW+ P + P Y + +
Sbjct: 4 GSSGSHDSRLTAGVP-DTPTRL-----VFSALGPTSLRVSWQE-P--RCERPLQGYSVEY 54
Query: 926 RKKNDTEFQSETLKEYGNVGIAVVRIPSEFYYT--------EYEVKVQAINDVGPGPESE 977
+ N E + P++ Y +V+A + G G E E
Sbjct: 55 QLLNGGELHRLN-----------IPNPAQTSVVVEDLLPNHSYVFRVRAQSQEGWGRERE 103
>2db8_A Tripartite motif protein 9, isoform 2; ring finger protein 91,
TRIM9, KIAA0282, RNF91, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 110
Score = 74.0 bits (182), Expect = 5e-16
Identities = 24/120 (20%), Positives = 41/120 (34%), Gaps = 15/120 (12%)
Query: 767 STKTTVIVEGPPGLPGGVQVVEVHKTSATIQWTDGATNGRPITHYKIIARTNWNSTWFNV 826
S+ ++ V P L ++ H SAT+ W + P Y + + V
Sbjct: 2 SSGSSGPVPATPILQ--LEECCTHNNSATLSWKQPPLSTVPADGYILELDDGNGGQFREV 59
Query: 827 SEHVIGKEVDRYTGRK-EASIENVLVPWSTYEFKVIAGNELGYGEPSSPSPQYNTPADKP 885
Y G++ +++ L STY +V A N+ G S + P
Sbjct: 60 -----------YVGKETMCTVDG-LHFNSTYNARVKAFNKTGVSPYSKTLVLQTSEGSGP 107
Score = 40.9 bits (96), Expect = 2e-04
Identities = 14/84 (16%), Positives = 24/84 (28%), Gaps = 21/84 (25%)
Query: 902 LSISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETLKEYGNVGIAVVRIPSEFY----- 956
++SW+ P Y + N +F+ V
Sbjct: 27 ATLSWKQ--PPLSTVPADGYILELDDGNGGQFRE------------VYVGKETMCTVDGL 72
Query: 957 --YTEYEVKVQAINDVGPGPESEV 978
+ Y +V+A N G P S+
Sbjct: 73 HFNSTYNARVKAFNKTGVSPYSKT 96
>2cry_A KIN of IRRE-like protein 3; IG fold, KIN of irregular chiasm-like
protein 3, nephrin- like 2, structural genomics, NPPSFA;
NMR {Homo sapiens} SCOP: b.1.1.1
Length = 122
Score = 74.2 bits (182), Expect = 6e-16
Identities = 31/111 (27%), Positives = 40/111 (36%), Gaps = 15/111 (13%)
Query: 576 SSAQLRVLTLKPSFKKRPLESETYAGEGGNVTIFCNPEAAPKPKFV-WKKDGNII--GSG 632
SS L V P +A G I C + P P + W N++ G+
Sbjct: 5 SSGTLTVNG-PPIISS---TQTQHALHGEKGQIKCFIRSTPPPDRIAWSWKENVLESGTS 60
Query: 633 GRRKIFENGN-------LLISPVSR-DDSGIYSCTATNVHGMDESKGRLIV 675
GR + L IS + R D IY+CTA N G D RL
Sbjct: 61 GRYTVETISTEEGVISTLTISNIVRADFQTIYNCTAWNSFGSDTEIIRLKE 111
Score = 54.9 bits (132), Expect = 3e-09
Identities = 19/88 (21%), Positives = 31/88 (35%), Gaps = 12/88 (13%)
Query: 414 GDKVRLECVAFGYPVPSY-NWTRRGSPLP----------RNAYFENFNRILTIPNVKVED 462
G+K +++C P P W+ + + L + E LTI N+ D
Sbjct: 28 GEKGQIKCFIRSTPPPDRIAWSWKENVLESGTSGRYTVETISTEEGVISTLTISNIVRAD 87
Query: 463 -QGEYICRASNDRSALESSVTISIQAEP 489
Q Y C A N + + + Q
Sbjct: 88 FQTIYNCTAWNSFGSDTEIIRLKEQGSE 115
Score = 53.7 bits (129), Expect = 8e-09
Identities = 21/112 (18%), Positives = 42/112 (37%), Gaps = 23/112 (20%)
Query: 188 RGPYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSY-EWFKEDYVQDRLVANLIDPL 246
GP I ++ + C+ P P W ++ N+++
Sbjct: 12 NGPPIISSTQTQHALHGEK-----GQIKCFIRSTPPPDRIAWSWKE--------NVLESG 58
Query: 247 SDKRFTLS--------GGNLIINDPRQVEDRGSYHCKASNKFGSIISESVQL 290
+ R+T+ L I++ + + + Y+C A N FGS +E ++L
Sbjct: 59 TSGRYTVETISTEEGVISTLTISNIVRADFQTIYNCTAWNSFGS-DTEIIRL 109
Score = 51.8 bits (124), Expect = 3e-08
Identities = 21/114 (18%), Positives = 36/114 (31%), Gaps = 15/114 (13%)
Query: 478 ESSVTISIQAEPNFTIPLTDKHMDNQADLTWTCEAFGVPD-VTYSWFRNGELLNSETLPL 536
SS T+++ P + T + + C P +W +L S T
Sbjct: 4 GSSGTLTVNGPPIISSTQTQHALHGE-KGQIKCFIRSTPPPDRIAWSWKENVLESGT--- 59
Query: 537 EDQDRYFIQDN--------VLTIRYLNPERDPAMYQCRAKNQLKTRYSSAQLRV 582
RY ++ LTI + +Y C A N + +L+
Sbjct: 60 --SGRYTVETISTEEGVISTLTISNIVRADFQTIYNCTAWNSFGSDTEIIRLKE 111
Score = 47.6 bits (113), Expect = 1e-06
Identities = 21/118 (17%), Positives = 36/118 (30%), Gaps = 7/118 (5%)
Query: 665 GMDESKGRLIVLHGPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGN 724
G S G L V P Q++C + D W+ + +
Sbjct: 1 GSSGSSGTLTVNGPPII--SSTQTQHALHGEKGQIKCFIRSTPPPD-RIAWSWKENVLES 57
Query: 725 MDLNELETPNINIDGGL---LEITNASFAD-AGEYECVVKSTVGKISTKTTVIVEGPP 778
I+ + G+ L I+N AD Y C ++ G + + +G
Sbjct: 58 GTSGRYTVETISTEEGVISTLTISNIVRADFQTIYNCTAWNSFGSDTEIIRLKEQGSE 115
>1sy6_A T-cell surface glycoprotein CD3 gamma/epsilon chain; CD3 epsilon,
OKT3 FAB, signaling protein/antibiotic complex; 2.10A
{Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 2atp_E*
Length = 204
Score = 76.5 bits (187), Expect = 6e-16
Identities = 23/202 (11%), Positives = 59/202 (29%), Gaps = 43/202 (21%)
Query: 412 KAGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYFENFNRILTIPNVKVEDQGEYICRAS 471
+ V L C + W + G + + + + + +G Y C+ S
Sbjct: 16 QEDGSVLLTC---DAEAKNITWFKDGKMIGFL---TEDKKKWNLGSNAKDPRGMYQCKGS 69
Query: 472 NDRS--------------ALESSVTISIQAEPNFTIPLTDKHMD-------------NQA 504
++S A + + + + +D + + +
Sbjct: 70 QNKSKPLQVYYRMGSADDAKKDAAKKDDAKKDDAKKDGSDGNEEMGGITQTPYKVSISGT 129
Query: 505 DLTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQDNVLTIRYLNPERDPAMYQ 564
+ TC + ++ W N + + + ED ++ L+++ + Y
Sbjct: 130 TVILTCPQYPGSEIL--WQHNDKNIGGD----EDDKNIGSDEDHLSLKEFSELEQSGYYV 183
Query: 565 CRAKNQLKTRYSSAQLRVLTLK 586
C + + L L+
Sbjct: 184 CYPRGSKPEDANFY----LYLR 201
Score = 76.5 bits (187), Expect = 7e-16
Identities = 36/198 (18%), Positives = 59/198 (29%), Gaps = 44/198 (22%)
Query: 602 EGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTAT 661
E G+V + C+ A W KDG +IG K + ++D G+Y C +
Sbjct: 17 EDGSVLLTCD---AEAKNITWFKDGKMIGFLTEDKKK----WNLGSNAKDPRGMYQCKGS 69
Query: 662 NVHGM------------DESKGRLIVLHGPS---------------YYEQLPPKITIAAH 694
D K Q P K++I+
Sbjct: 70 QNKSKPLQVYYRMGSADDAKKDAAKKDDAKKDDAKKDGSDGNEEMGGITQTPYKVSISGT 129
Query: 695 RNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEITNASFA-DAG 753
+ L C + +W HN I + + NI D L + S +G
Sbjct: 130 T-VILTCPQYPGS----EILWQHNDKNI----GGDEDDKNIGSDEDHLSLKEFSELEQSG 180
Query: 754 EYECVVKSTVGKISTKTT 771
Y C + + + +
Sbjct: 181 YYVCYPRGSKPEDANFYL 198
Score = 70.3 bits (171), Expect = 1e-13
Identities = 31/209 (14%), Positives = 55/209 (26%), Gaps = 45/209 (21%)
Query: 488 EPNFTIPLTDKHMDNQADLTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQDN 547
+ N + + D D LT C +WF++G+++ T
Sbjct: 5 KGNHLVKVYDYQEDGSVLLT--C---DAEAKNITWFKDGKMIGFLT----------EDKK 49
Query: 548 VLTIRYLNPERDPAMYQCRAKNQLKTRY------------SSAQLRVLTLKPSFKKRPLE 595
+ + MYQC+ + K K+
Sbjct: 50 KWNLGSNAKD-PRGMYQCKGSQNKSKPLQVYYRMGSADDAKKDAAKKDDAKKDDAKKDGS 108
Query: 596 SE------------TYAGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGN- 642
+ G V + C P + +W+ + IG K +
Sbjct: 109 DGNEEMGGITQTPYKVSISGTTVILTC--PQYPGSEILWQHNDKNIGGDEDDKNIGSDED 166
Query: 643 -LLISPVSR-DDSGIYSCTATNVHGMDES 669
L + S + SG Y C D +
Sbjct: 167 HLSLKEFSELEQSGYYVCYPRGSKPEDAN 195
Score = 53.7 bits (128), Expect = 4e-08
Identities = 22/148 (14%), Positives = 39/148 (26%), Gaps = 21/148 (14%)
Query: 154 LFICEASIQKLHYLLNDDRTYQYGMDIENPDKIPRGPYFIKQPTDVVFDLSKRSIL---- 209
++ C+ S K L R ++ K + + I
Sbjct: 63 MYQCKGSQNKSKPLQVYYRMGSADDAKKDAAKKDDAKKDDAKKDGSDGNEEMGGITQTPY 122
Query: 210 ------NDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLSGG-NLIIND 262
+ L+C YP W D I D + S +L + +
Sbjct: 123 KVSISGTTVILTCPQ--YPGSEILWQHND--------KNIGGDEDDKNIGSDEDHLSLKE 172
Query: 263 PRQVEDRGSYHCKASNKFGSIISESVQL 290
++E G Y C + + L
Sbjct: 173 FSELEQSGYYVCYPRGSKPEDANFYLYL 200
Score = 52.6 bits (125), Expect = 1e-07
Identities = 27/192 (14%), Positives = 53/192 (27%), Gaps = 41/192 (21%)
Query: 210 NDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVEDR 269
+ L+C + WFK+ +I L++ + + G+ + R
Sbjct: 19 GSVLLTC---DAEAKNITWFKDG--------KMIGFLTEDKKKWNLGS------NAKDPR 61
Query: 270 GSYHCKASNKFGSIISESVQLAFGF---IGEFNLKRAPEIGNQNWGKAMFCDPPT----- 321
G Y CK S + ++ A + + G +
Sbjct: 62 GMYQCKGSQNKSKPLQVYYRMGSADDAKKDAAKKDDAKKDDAKKDGSDGNEEMGGITQTP 121
Query: 322 ---------------NYPGVNYYWARDYFPNFVEEDKRVFVSYDGALYFSALEQI-DAGN 365
YPG W + +ED + S + L ++ +G
Sbjct: 122 YKVSISGTTVILTCPQYPGSEILWQHNDKNIGGDEDDKNIGSDEDHLSLKEFSELEQSGY 181
Query: 366 YSCNVQSKVSDT 377
Y C + +
Sbjct: 182 YVCYPRGSKPED 193
Score = 32.2 bits (72), Expect = 0.56
Identities = 15/96 (15%), Positives = 25/96 (26%), Gaps = 10/96 (10%)
Query: 715 WTHNGVRIGNMDLNELETPNINIDGGLLEITNASFADAGEYECVVKSTVGKISTKTTVIV 774
W +G IG + D + + + G Y+C K +
Sbjct: 34 WFKDGKMIGF----------LTEDKKKWNLGSNAKDPRGMYQCKGSQNKSKPLQVYYRMG 83
Query: 775 EGPPGLPGGVQVVEVHKTSATIQWTDGATNGRPITH 810
+ + K A +DG IT
Sbjct: 84 SADDAKKDAAKKDDAKKDDAKKDGSDGNEEMGGITQ 119
>3qr2_A Basigin; CD147, EMMPRIN, immunoglobulin-like domain, beta sheet,
STRU genomics, berkeley structural genomics center,
BSGC, cell A; 2.30A {Homo sapiens} PDB: 3qqn_A
Length = 137
Score = 74.3 bits (182), Expect = 8e-16
Identities = 18/106 (16%), Positives = 30/106 (28%), Gaps = 18/106 (16%)
Query: 586 KPSFKKRPLESETYAGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSG------------- 632
F + P GG+V + C +P P+ W +G
Sbjct: 21 MAGFVQAP--LSQQRWVGGSVELHCEAVGSPVPEIQWWFEGQGPNDICSQLWDGARLDRV 78
Query: 633 ---GRRKIFENGNLLISPVSRDDSGIYSCTATNVHGMDESKGRLIV 675
+ I + +D+G Y C A+N + V
Sbjct: 79 HIHATYHQHAASTISIDTLVEEDTGTYECRASNDPDRNHLTRAPRV 124
Score = 72.7 bits (178), Expect = 3e-15
Identities = 28/126 (22%), Positives = 40/126 (31%), Gaps = 23/126 (18%)
Query: 391 HSNFQQLKFPNNFPKTFPEAPK-----AGDKVRLECVAFGYPVPSYNWTRRGSPLPRN-- 443
H + L + F +AP G V L C A G PVP W G
Sbjct: 8 HHHSSGLVPRGSHMAGFVQAPLSQQRWVGGSVELHCEAVGSPVPEIQWWFEGQGPNDICS 67
Query: 444 ---------------AYFENFNRILTIPNVKVEDQGEYICRASNDRSALESSVTISIQ-A 487
Y ++ ++I + ED G Y CRASND + ++
Sbjct: 68 QLWDGARLDRVHIHATYHQHAASTISIDTLVEEDTGTYECRASNDPDRNHLTRAPRVKWV 127
Query: 488 EPNFTI 493
+
Sbjct: 128 RAQAVV 133
Score = 68.9 bits (168), Expect = 6e-14
Identities = 25/128 (19%), Positives = 40/128 (31%), Gaps = 11/128 (8%)
Query: 470 ASNDRSALESSVTISIQAEPNFTIPLTDKHMDNQADLTWTCEAFGVPDVTYSWFRNGELL 529
+S+ S + F + + CEA G P W+ G+
Sbjct: 3 SSHHHHHHSSGLVPRGSHMAGFVQAPLSQQRWVGGSVELHCEAVGSPVPEIQWWFEGQGP 62
Query: 530 NSETLPLEDQDRYFIQ----------DNVLTIRYLNPERDPAMYQCRAKNQLKTRYSSAQ 579
N L D R + ++I L E D Y+CRA N + +
Sbjct: 63 NDICSQLWDGARLDRVHIHATYHQHAASTISIDTLVEE-DTGTYECRASNDPDRNHLTRA 121
Query: 580 LRVLTLKP 587
RV ++
Sbjct: 122 PRVKWVRA 129
Score = 65.0 bits (158), Expect = 1e-12
Identities = 22/101 (21%), Positives = 36/101 (35%), Gaps = 13/101 (12%)
Query: 190 PYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDK 249
F++ P + + L C A G P P +W+ E + + + L D
Sbjct: 22 AGFVQAPLSQQRWVGG-----SVELHCEAVGSPVPEIQWWFEGQGPNDICSQLWDGARLD 76
Query: 250 RFTLSG-------GNLIINDPRQVEDRGSYHCKASNKFGSI 283
R + + I+ ED G+Y C+ASN
Sbjct: 77 RVHIHATYHQHAASTISIDTL-VEEDTGTYECRASNDPDRN 116
Score = 46.2 bits (109), Expect = 5e-06
Identities = 13/100 (13%), Positives = 27/100 (27%), Gaps = 14/100 (14%)
Query: 686 PPKITIAAHRNLQLRCSA-----------HTEELLDVAYIWTHNGVRIGNMDLNELETPN 734
P +++L C A + + +G R+ + ++ +
Sbjct: 28 PLSQQRWVGGSVELHCEAVGSPVPEIQWWFEGQGPNDICSQLWDGARLDRVHIHATYHQH 87
Query: 735 INIDGGLLEITNASFADAGEYECVVKSTVGKISTKTTVIV 774
+ I D G YEC + + V
Sbjct: 88 AA---STISIDTLVEEDTGTYECRASNDPDRNHLTRAPRV 124
>2dm7_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} PDB: 2edl_A
2edw_A 2gqh_A 2edt_A 2edq_A 2edr_A
Length = 108
Score = 73.2 bits (180), Expect = 8e-16
Identities = 28/107 (26%), Positives = 40/107 (37%), Gaps = 18/107 (16%)
Query: 587 PSFKKRPLESETYAGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGN---L 643
F + A EG T+ C E + WKK + GGR + ++G L
Sbjct: 9 ARFTQDL--KTKEASEGATATLQC--ELSKVAPVEWKKGPETLRDGGRYSLKQDGTRCEL 64
Query: 644 LISPVSRDDSGIYSCTATNVHGMDESKGRLIVLHGPSYYEQLPPKIT 690
I +S D+G YSC G + + L V LP + T
Sbjct: 65 QIHDLSVADAGEYSCMC----GQERTSATLTV-------RALPARFT 100
Score = 62.8 bits (153), Expect = 3e-12
Identities = 28/114 (24%), Positives = 37/114 (32%), Gaps = 19/114 (16%)
Query: 489 PNFTIPLTDKHMDNQADLTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQDN- 547
FT L K A T CE V V W + E L D RY ++ +
Sbjct: 9 ARFTQDLKTKEASEGATATLQCELSKVAPVE--WKKGPE-------TLRDGGRYSLKQDG 59
Query: 548 ---VLTIRYLNPERDPAMYQCRAKNQLKTRYSSAQLRVLTLKPSFKKRPLESET 598
L I L+ D Y C + +SA L V L F + +
Sbjct: 60 TRCELQIHDLSVA-DAGEYSCMCGQE----RTSATLTVRALPARFTE-GSGPSS 107
Score = 62.4 bits (152), Expect = 5e-12
Identities = 21/90 (23%), Positives = 33/90 (36%), Gaps = 11/90 (12%)
Query: 414 GDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYF----ENFNRILTIPNVKVEDQGEYICR 469
G L+C V W + L + + L I ++ V D GEY C
Sbjct: 23 GATATLQCEL--SKVAPVEWKKGPETLRDGGRYSLKQDGTRCELQIHDLSVADAGEYSCM 80
Query: 470 ASNDRSALESSVTISIQAEPN-FTIPLTDK 498
+R +S T++++A P FT
Sbjct: 81 CGQER----TSATLTVRALPARFTEGSGPS 106
Score = 47.4 bits (113), Expect = 1e-06
Identities = 18/68 (26%), Positives = 27/68 (39%), Gaps = 15/68 (22%)
Query: 715 WTHNGVRIGNMDLNELETPNINI--DGGL--LEITNASFADAGEYECVVKSTVGKISTKT 770
W + + ++ DG L+I + S ADAGEY C+ G+ T
Sbjct: 40 WKKGPETLR-------DGGRYSLKQDGTRCELQIHDLSVADAGEYSCM----CGQERTSA 88
Query: 771 TVIVEGPP 778
T+ V P
Sbjct: 89 TLTVRALP 96
Score = 38.9 bits (91), Expect = 8e-04
Identities = 17/95 (17%), Positives = 21/95 (22%), Gaps = 18/95 (18%)
Query: 190 PYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDK 249
F + TL C EW K +
Sbjct: 9 ARFTQDLKTKEASEGA-----TATLQCELS--KVAPVEWKKGP--------ETLRDGGRY 53
Query: 250 RFTLSGGN--LIINDPRQVEDRGSYHCKASNKFGS 282
G L I+D V D G Y C + S
Sbjct: 54 SLKQDGTRCELQIHDL-SVADAGEYSCMCGQERTS 87
>1ccz_A Protein (CD58); LFA-3, glycoprotein; HET: NAG; 1.80A {Homo sapiens}
SCOP: b.1.1.1 b.1.1.3 PDB: 1ci5_A 1qa9_B
Length = 171
Score = 75.0 bits (184), Expect = 1e-15
Identities = 33/190 (17%), Positives = 52/190 (27%), Gaps = 38/190 (20%)
Query: 596 SETYAGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGS-------------GGRRKIFENGN 642
+ Y GNVT P P + +WKK + + +G+
Sbjct: 3 QQIYGVVYGNVTFHV-PSNVPLKEVLWKKQKDKVAELENSEFRAFSSFKNRVYLDTVSGS 61
Query: 643 LLISPVSRDDSGIYSCTATNVHGMDESKGRLIVLHGPSYYEQLPPKITIAAHRNLQLRCS 702
L I ++ D Y + N+ K L VL S P I N L C
Sbjct: 62 LTIYNLTSSDEDEYEMESPNITD--TMKFFLYVLEMVS-----KPMIYWECS-NATLTCE 113
Query: 703 AHTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEITNASFADAGEYECVVKST 762
E DV + + ++ ++C +
Sbjct: 114 V--LEGTDVELKLYQGKEHLRS--------------LRQKTMSYQWTNLRAPFKCKAVNR 157
Query: 763 VGKISTKTTV 772
V + S V
Sbjct: 158 VSQESEMEVV 167
Score = 65.7 bits (160), Expect = 2e-12
Identities = 29/173 (16%), Positives = 48/173 (27%), Gaps = 43/173 (24%)
Query: 414 GDKVRLECVAFGYPVPSYNWTRRG--------------SPLPRNAYFENFNRILTIPNVK 459
V P+ W ++ S Y + + LTI N+
Sbjct: 10 YGNVTFHV-PSNVPLKEVLWKKQKDKVAELENSEFRAFSSFKNRVYLDTVSGSLTIYNLT 68
Query: 460 VEDQGEYICRASNDRSALESSVTISIQA---EPNFTIPLTDKHMDNQADLTWTCEAFGVP 516
D+ EY + N + + +P ++ T TCE
Sbjct: 69 SSDEDEYEMESPNITD--TMKFFLYVLEMVSKPMIYW--------ECSNATLTCEVLEGT 118
Query: 517 DVTYSWFRNGELLNSETLPLEDQDRYFIQDNVLTIRYLNPERDPAMYQCRAKN 569
DV ++ E L S T+ Y A ++C+A N
Sbjct: 119 DVELKLYQGKEHLRS--------------LRQKTMSY-QWTNLRAPFKCKAVN 156
Score = 62.3 bits (151), Expect = 2e-11
Identities = 29/165 (17%), Positives = 50/165 (30%), Gaps = 27/165 (16%)
Query: 505 DLTWTCEAFGVPDVTYSWFRNGELL----NSETLPLED-QDR-YFIQDN-VLTIRYLNPE 557
++T+ + VP W + + + NSE ++R Y + LTI L
Sbjct: 12 NVTFHVPS-NVPLKEVLWKKQKDKVAELENSEFRAFSSFKNRVYLDTVSGSLTIYNLTSS 70
Query: 558 RDPAMYQCRAKNQLKTRYSSAQLRVLTLKPSFKKRPLESETYAGEGGNVTIFCNPEAAPK 617
D Y+ + N T L VL + E N T+ C
Sbjct: 71 -DEDEYEMESPNI--TDTMKFFLYVL--------EMVSKPMIYWECSNATLTCEVLEGTD 119
Query: 618 PKFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTATN 662
+ + + S + +S + + C A N
Sbjct: 120 VELKLYQGKEHLRSLRQ--------KTMSYQWTNLRAPFKCKAVN 156
Score = 52.6 bits (126), Expect = 6e-08
Identities = 20/152 (13%), Positives = 35/152 (23%), Gaps = 27/152 (17%)
Query: 333 DYFPNFVEEDKRVFVSYDGALYFSALEQIDAGNYSCNVQSKVSDTGRNGPFFPLKVFPHS 392
F +F +++ + G+L L D Y + F L V
Sbjct: 44 RAFSSF--KNRVYLDTVSGSLTIYNLTSSDEDEYEMESPNITDTM-----KFFLYVLE-- 94
Query: 393 NFQQLKFPNNFPKTFPEAPKAGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYFENFNRI 452
+ P L C + L R
Sbjct: 95 -----------MVSKPMIYWECSNATLTCEVLEGTDVELKLYQGKEHL-------RSLRQ 136
Query: 453 LTIPNVKVEDQGEYICRASNDRSALESSVTIS 484
T+ + + C+A N S ++
Sbjct: 137 KTMSYQWTNLRAPFKCKAVNRVSQESEMEVVN 168
Score = 39.1 bits (91), Expect = 0.002
Identities = 11/68 (16%), Positives = 25/68 (36%), Gaps = 7/68 (10%)
Query: 714 IWTHNGVRIGNMDLNELETPN-------INIDGGLLEITNASFADAGEYECVVKSTVGKI 766
+W ++ ++ +E + ++ G L I N + +D EYE + +
Sbjct: 27 LWKKQKDKVAELENSEFRAFSSFKNRVYLDTVSGSLTIYNLTSSDEDEYEMESPNITDTM 86
Query: 767 STKTTVIV 774
V+
Sbjct: 87 KFFLYVLE 94
Score = 34.9 bits (80), Expect = 0.059
Identities = 10/73 (13%), Positives = 22/73 (30%), Gaps = 18/73 (24%)
Query: 210 NDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVEDR 269
++ TL+C + + ++ K S ++ + R
Sbjct: 106 SNATLTCEVLEGTDVELKLYQ-----------------GKEHLRSLRQKTMS-YQWTNLR 147
Query: 270 GSYHCKASNKFGS 282
+ CKA N+
Sbjct: 148 APFKCKAVNRVSQ 160
Score = 33.7 bits (77), Expect = 0.13
Identities = 23/174 (13%), Positives = 47/174 (27%), Gaps = 35/174 (20%)
Query: 211 DITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKR----FTLSGGNLIINDPRQV 266
++T + P W K+ L + S + G+L I +
Sbjct: 12 NVTFHVPSNV-PLKEVLWKKQKDKVAELENSEFRAFSSFKNRVYLDTVSGSLTIYNLTS- 69
Query: 267 EDRGSYHCKASNKFGSIISESVQLAFGFIGEFNLK-----RAPEIGNQNWGKAMFCDPPT 321
D Y ++ N ++ +F L P I + + C+
Sbjct: 70 SDEDEYEMESPNITDTM-------------KFFLYVLEMVSKPMIYWECSNATLTCEVL- 115
Query: 322 NYPGVNYYWARDYFPNFVEEDKRVFVSYDGALYFSALEQIDAGNYSCNVQSKVS 375
V + + ++ +SY + C ++VS
Sbjct: 116 EGTDVELKLYQG--KEHLRSLRQKTMSYQ--------WTNLRAPFKCKAVNRVS 159
>3vh8_G Killer cell immunoglobulin-like receptor 3DL1; immunoglobulin fold,
natural killer cell receptor, immune SY; HET: NAG; 1.80A
{Homo sapiens} PDB: 1im9_D
Length = 316
Score = 77.6 bits (191), Expect = 2e-15
Identities = 44/289 (15%), Positives = 73/289 (25%), Gaps = 38/289 (13%)
Query: 484 SIQAEPNFTIPLTDKHMDNQADLTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYF 543
+ A P+ +P +T C + ++ + Q
Sbjct: 26 FLSAWPSAVVPRGGH-------VTLRCHY-RHRFNNFMLYKEDRIHIPIFHGRIFQ---- 73
Query: 544 IQDNVLTIRYLNPERDPAMYQCRAKNQLKTRYSSAQLRVLTLKPSFKKRP----LESETY 599
+ + Y CR + SA + + + R
Sbjct: 74 ---ESFNMSPVTTA-HAGNYTCRGSHPHSPTGWSAPSNPVVIMVTGNHRKPSLLAHPGPL 129
Query: 600 AGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENG----NLLISPVSRDDSGI 655
G V + C + F K+G +G N I P+ +G
Sbjct: 130 VKSGERVILQCWSDIMF-EHFFLHKEGISKDPSRLVGQIHDGVSKANFSIGPMMLALAGT 188
Query: 656 YSCTATNVHGMDE----SKGRLIVLHGPSYYEQL--PPKITIAAHRNLQLRCSAHTEELL 709
Y C + H + S IV+ GP L P + A ++ L CS+
Sbjct: 189 YRCYGSVTHTPYQLSAPSDPLDIVVTGPYEKPSLSAQPGPKVQAGESVTLSCSSR---SS 245
Query: 710 DVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEITNASFADAGEYECV 758
Y + R G L + G Y C
Sbjct: 246 YDMYHLS----REGGAHERRLPAVRKVNRTFQADFPLGPATHGGTYRCF 290
Score = 75.7 bits (186), Expect = 7e-15
Identities = 38/273 (13%), Positives = 71/273 (26%), Gaps = 35/273 (12%)
Query: 414 GDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYFENFNRILTIPNVKVEDQGEYICRASND 473
G V L C + ++ + + F + V G Y CR S+
Sbjct: 38 GGHVTLRCHY-RHRFNNFMLYKEDRIHIPIFHGRIFQESFNMSPVTTAHAGNYTCRGSHP 96
Query: 474 RS---------ALESSVTI-----SIQAEPNFTIPLTDKHMDNQADLTWTCEAFGVPDVT 519
S + VT S+ A P + ++ + C + +
Sbjct: 97 HSPTGWSAPSNPVVIMVTGNHRKPSLLAHPGPLVKSGER-------VILQCWS-DIMFEH 148
Query: 520 YSWFRNGELLNSETLPLEDQDRYFIQDNVLTIRYLNPERDPAMYQCRAKNQLKTRYSSA- 578
+ + G + L + D + +I + Y+C SA
Sbjct: 149 FFLHKEGISKDPSRLVGQIHDGVSKAN--FSIGPMMLA-LAGTYRCYGSVTHTPYQLSAP 205
Query: 579 ----QLRVLTLKPSFKKRPLESETYAGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGR 634
+ V T + G +VT+ C+ + + ++G
Sbjct: 206 SDPLDIVV-TGPYEKPSLSAQPGPKVQAGESVTLSCSSR-SSYDMYHLSREGGAHERRLP 263
Query: 635 RKIFENGN--LLISPVSRDDSGIYSCTATNVHG 665
N G Y C + H
Sbjct: 264 AVRKVNRTFQADFPLGPATHGGTYRCFGSFRHS 296
Score = 59.9 bits (145), Expect = 1e-09
Identities = 45/268 (16%), Positives = 78/268 (29%), Gaps = 38/268 (14%)
Query: 317 CDPPTNYPGVNYYWARDYFPNFVEEDKRVFVSYDGALYFSALEQIDAGNYSCNVQSKVSD 376
C + N+ ++ + R+F + S + AGNY+C S
Sbjct: 45 CHYRHRFN--NFMLYKEDRIHIPIFHGRIF---QESFNMSPVTTAHAGNYTCRGSHPHSP 99
Query: 377 TGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPEAP-----KAGDKVRLECVAFGYPVPSY 431
TG + P SN + N K A K+G++V L+C + +
Sbjct: 100 TGWSAP---------SNPVVIMVTGNHRKPSLLAHPGPLVKSGERVILQCWSDIMFE-HF 149
Query: 432 NWTRRGSPLP-----RNAYFENFNRILTIPNVKVEDQGEYICRASNDRSALESS-----V 481
+ G + +I + + G Y C S + + S +
Sbjct: 150 FLHKEGISKDPSRLVGQIHDGVSKANFSIGPMMLALAGTYRCYGSVTHTPYQLSAPSDPL 209
Query: 482 TISIQAEPNFTI--PLTDKHMDNQADLTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQ 539
I + + +T +C + D Y R G +
Sbjct: 210 DIVVTGPYEKPSLSAQPGPKVQAGESVTLSCSSRSSYD-MYHLSREGGAHERRLPAVRKV 268
Query: 540 DRYFIQDNVLTIRYLNPERDPAMYQCRA 567
+R F D L P Y+C
Sbjct: 269 NRTFQADFPLG-----PATHGGTYRCFG 291
Score = 47.2 bits (112), Expect = 1e-05
Identities = 48/299 (16%), Positives = 81/299 (27%), Gaps = 45/299 (15%)
Query: 212 ITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVEDRGS 271
+TL C+ + ++ +KED + + + F +S P G+
Sbjct: 41 VTLRCH-YRHRFNNFMLYKED---RIHIPIFHGRIFQESFNMS--------PVTTAHAGN 88
Query: 272 YHCKASNKF----GSIISESVQLAFGFIGEFNLKRAPEIGNQNWGKAMFCDPPT-----N 322
Y C+ S+ S S V + R P + + +
Sbjct: 89 YTCRGSHPHSPTGWSAPSNPVVIMVTG-----NHRKPSLLAHPGPLVKSGERVILQCWSD 143
Query: 323 YPGVNYYWARDYFPNFVEEDKRVFVSYDGALYFS--ALEQIDAGNYSCNVQSKVSDTGRN 380
+++ ++ FS + AG Y C + +
Sbjct: 144 IMFEHFFLHKEGISKDPSRLVGQIHDGVSKANFSIGPMMLALAGTYRCYGSVTHTPYQLS 203
Query: 381 GPFFPLK--VFPHSNFQQLKFPNNFPKTFPEAPKAGDKVRLECVAFGYPVPSYNWTRRGS 438
P PL V L +AG+ V L C + Y+ +R G
Sbjct: 204 APSDPLDIVVTGPYEKPSLSAQPG------PKVQAGESVTLSCSSRSSYD-MYHLSREGG 256
Query: 439 PLP---RNAYFENFNRILTIPNVKVEDQGEYICRASNDRSALESS-----VTISIQAEP 489
N P G Y C S S E S + +S+ P
Sbjct: 257 AHERRLPAVRKVNRTFQADFPLGPATHGGTYRCFGSFRHSPYEWSDPSDPLLVSVTGNP 315
>1wwc_A Protein (NT-3 growth factor receptor TRKC); TRK receptor, receptor
tyrosine kinase, 3D-domain swapping, transferase; 1.90A
{Homo sapiens} SCOP: b.1.1.4
Length = 118
Score = 71.4 bits (175), Expect = 4e-15
Identities = 17/94 (18%), Positives = 28/94 (29%), Gaps = 7/94 (7%)
Query: 605 NVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKI-------FENGNLLISPVSRDDSGIYS 657
I P P W +G + + G LL + + ++G Y+
Sbjct: 22 EHCIEFVVRGNPPPTLHWLHNGQPLRESKIIHVEYYQEGEISEGCLLFNKPTHYNNGNYT 81
Query: 658 CTATNVHGMDESKGRLIVLHGPSYYEQLPPKITI 691
A N G L P +++ P I
Sbjct: 82 LIAKNPLGTANQTINGHFLKEPFPVDEVSPTPPI 115
Score = 67.1 bits (164), Expect = 2e-13
Identities = 20/104 (19%), Positives = 31/104 (29%), Gaps = 10/104 (9%)
Query: 402 NFPKTF--PEAPKAGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYF--------ENFNR 451
+P E P+ + +E V G P P+ +W G PL + E
Sbjct: 6 YYPPRVVSLEEPELRLEHCIEFVVRGNPPPTLHWLHNGQPLRESKIIHVEYYQEGEISEG 65
Query: 452 ILTIPNVKVEDQGEYICRASNDRSALESSVTISIQAEPNFTIPL 495
L + G Y A N ++ EP +
Sbjct: 66 CLLFNKPTHYNNGNYTLIAKNPLGTANQTINGHFLKEPFPVDEV 109
Score = 57.1 bits (138), Expect = 4e-10
Identities = 20/104 (19%), Positives = 33/104 (31%), Gaps = 5/104 (4%)
Query: 481 VTISIQAEPNFTIPLTDKHMDNQADLTWTCEAFGVPDVTYSWFRNG-ELLNSETLPLEDQ 539
V +++ P + + + + G P T W NG L S+ + +E
Sbjct: 1 VALTVYYPPRVVSL---EEPELRLEHCIEFVVRGNPPPTLHWLHNGQPLRESKIIHVEYY 57
Query: 540 DRYFIQDNVLTIRYLNPERDPAMYQCRAKNQLKTRYSSAQLRVL 583
I + L + Y AKN L T + L
Sbjct: 58 QEGEISEGCLLFNKPTHY-NNGNYTLIAKNPLGTANQTINGHFL 100
Score = 54.4 bits (131), Expect = 5e-09
Identities = 16/84 (19%), Positives = 32/84 (38%), Gaps = 8/84 (9%)
Query: 211 DITLSCYAGGYPNPSYEWFKEDYVQDRLVAN--LIDPLSDKRFTLSGGNLIINDPRQVED 268
+ + G P P+ W + + +I + +S G L+ N P +
Sbjct: 22 EHCIEFVVRGNPPPTLHWLHNG----QPLRESKIIHVEYYQEGEISEGCLLFNKP-THYN 76
Query: 269 RGSYHCKASNKFGSIISESVQLAF 292
G+Y A N G+ ++++ F
Sbjct: 77 NGNYTLIAKNPLGT-ANQTINGHF 99
Score = 52.1 bits (125), Expect = 3e-08
Identities = 16/106 (15%), Positives = 28/106 (26%), Gaps = 17/106 (16%)
Query: 684 QLPPKIT----IAAHRNLQLRCSAH-----TEELLDVAYIWTHNGVRIGNMDLNELET-P 733
PP++ + T W HNG + + +E
Sbjct: 6 YYPPRVVSLEEPELRLEHCIEFVVRGNPPPT-------LHWLHNGQPLRESKIIHVEYYQ 58
Query: 734 NINIDGGLLEITNASFADAGEYECVVKSTVGKISTKTTVIVEGPPG 779
I G L + + G Y + K+ +G + P
Sbjct: 59 EGEISEGCLLFNKPTHYNNGNYTLIAKNPLGTANQTINGHFLKEPF 104
>3vpp_A C-type lectin domain family 9 member A; dendritic cell, C-type
lectin-like domain, membrane, immune; 1.64A {Homo
sapiens}
Length = 132
Score = 71.7 bits (176), Expect = 5e-15
Identities = 30/131 (22%), Positives = 47/131 (35%), Gaps = 11/131 (8%)
Query: 29 CPQHWVQYRDSCYRFVKSPLKTRNDAKLNCKSLDSDLANVNDADEHGFIMYQLFWQDPQR 88
CP +W+Q R+SCY + + ++ NC S L + +E FI L
Sbjct: 4 CPNNWIQNRESCYYVSEIW-SIWHTSQENCLKEGSTLLQIESKEEMDFITGSLRKIKGSY 62
Query: 89 RKWYFGGTQQSPN-LWVNEDGTNLNELDAAFLPEPADNVQRDYLAYSFSQSLKRWGFERV 147
W G +Q + W+ +DG++ + LP Y +K
Sbjct: 63 DYW-VGLSQDGHSGRWLWQDGSSPSP---GLLPAERSQSANQVCGY-----VKSNSLLSS 113
Query: 148 TGMEPLLFICE 158
FICE
Sbjct: 114 NCDTWKYFICE 124
>2dtg_E Insulin receptor; IR ectodomain, X-RAY crystallography, hormone
receptor/immune system complex; 3.80A {Homo sapiens}
SCOP: b.1.2.1 b.1.2.1 b.1.2.1 c.10.2.5 c.10.2.5 g.3.9.1
PDB: 3loh_E
Length = 897
Score = 78.4 bits (192), Expect = 7e-15
Identities = 30/197 (15%), Positives = 71/197 (36%), Gaps = 12/197 (6%)
Query: 786 VVEVHKTSATIQWTDGATNGRPITHYKIIARTNWNSTWFNVSEHVIGKEVDRYTGRKEAS 845
+ E+ ++S + D N + + + N + + ++ ++
Sbjct: 693 LKELEESSFRKTFEDYLHNV--VFVPRPSRKRRSLGDVGNAGNNEEHRPFEKVVNKESLV 750
Query: 846 IENVLVPWSTYEFKVIAGNELGYGEPSSPSPQYN---TPADKPYQAPSRIGGGGGKIGDL 902
I L ++ Y ++ A N+ E S + + P K + + +
Sbjct: 751 ISG-LRHFTGYRIELQACNQDTPEERCSVAAYVSARTMPEAKADDIVGPVTHEIFENNVV 809
Query: 903 SISWEPLPREKQNAPNIYYKIFWRKKNDTEFQS-ETLKEYGNVGIAVVRIPSEFYYTEYE 961
+ W+ P ++ N + Y++ +R+ D E +T K + +R Y
Sbjct: 810 HLMWQE-P-KEPNGLIVLYEVSYRRYGDEELHLCDTRKHFALERGCRLR---GLSPGNYS 864
Query: 962 VKVQAINDVGPGPESEV 978
V+++A + G G +E
Sbjct: 865 VRIRATSLAGNGSWTEP 881
Score = 60.7 bits (146), Expect = 2e-09
Identities = 22/215 (10%), Positives = 55/215 (25%), Gaps = 39/215 (18%)
Query: 775 EGPPGLPGGVQVVEVHKTSATIQWTDGATNGRPITHYKIIARTNWNSTWFNVSEHVIGKE 834
P +P V + ++W + ITHY + + ++
Sbjct: 592 ATNPSVPLDPISVSNSSSQIILKWKPPSDPNGNITHYLVFWERQAEDSELFELDY----- 646
Query: 835 VDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPSPQYN------TPADKPYQA 888
++ + +P T+ + + + + T + +
Sbjct: 647 ----------CLKGLKLPSRTWSPPFESEDSQKHNQSEYEDSAGECCSCPKTDSQILKEL 696
Query: 889 PSRIGGGGGKIGDLSISWEP-----LPREKQNAPNIYYKIFWRKKNDTEFQSETLKEYGN 943
++E + + + N+ E +
Sbjct: 697 EESS---------FRKTFEDYLHNVVFVPRPSRKRRSLGDVGNAGNNEEHRPFEKVVNKE 747
Query: 944 VGIAVVRIPSEFYYTEYEVKVQAINDVGPGPESEV 978
+ I ++T Y +++QA N P V
Sbjct: 748 ----SLVISGLRHFTGYRIELQACNQDTPEERCSV 778
Score = 48.8 bits (115), Expect = 8e-06
Identities = 22/126 (17%), Positives = 38/126 (30%), Gaps = 13/126 (10%)
Query: 768 TKTTVIVEGPPGLPGGVQVVEVHKTSATIQWTDGA-TNGRPITHYKIIARTNWNSTWFNV 826
+ T+ + G V + W + NG I Y++ R
Sbjct: 783 SARTMPEAKADDIVGPVTHEIFENNVVHLMWQEPKEPNG-LIVLYEVSYRRY------GD 835
Query: 827 SEHVIGKEVDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPSPQYNTPADKPY 886
E + + + + L P Y ++ A + G G + P+ Y T
Sbjct: 836 EELHLCDTRKHFALERGCRLRG-LSP-GNYSVRIRATSLAGNGSWTEPTYFYVTDYLDV- 892
Query: 887 QAPSRI 892
PS I
Sbjct: 893 --PSNI 896
>1waa_A Titin; metal binding protein, calmodulin-binding, cytoskeleton,
immunoglobulin domain, muscle protein, phosphorylation,
repeat; 1.80A {Homo sapiens} PDB: 1waa_E 1waa_F 1tit_A
1tiu_A 2rq8_A
Length = 93
Score = 70.0 bits (172), Expect = 8e-15
Identities = 19/93 (20%), Positives = 28/93 (30%), Gaps = 10/93 (10%)
Query: 586 KPSFKKRPLESETYAGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGN--- 642
+K PL G + P WK G + + +I E+G
Sbjct: 5 LIEVEK-PLYGVE-VFVGETAHFEI-ELSEPDVHGQWKLKGQPLAASPDCEIIEDGKKHI 61
Query: 643 LLISPVSRDDSGIYSCTATNVHGMDESKGRLIV 675
L++ +G S A N S L V
Sbjct: 62 LILHNCQLGMTGEVSFQAANTK----SAANLKV 90
Score = 60.4 bits (147), Expect = 2e-11
Identities = 15/68 (22%), Positives = 25/68 (36%), Gaps = 5/68 (7%)
Query: 412 KAGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYF----ENFNRILTIPNVKVEDQGEYI 467
G+ E P W +G PL + + IL + N ++ GE
Sbjct: 18 FVGETAHFEIE-LSEPDVHGQWKLKGQPLAASPDCEIIEDGKKHILILHNCQLGMTGEVS 76
Query: 468 CRASNDRS 475
+A+N +S
Sbjct: 77 FQAANTKS 84
Score = 57.3 bits (139), Expect = 2e-10
Identities = 19/101 (18%), Positives = 29/101 (28%), Gaps = 17/101 (16%)
Query: 486 QAEPNFTIPLTDKHMDNQADLTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQ 545
A PL + + E PDV W G+ PL I
Sbjct: 3 MALIEVEKPLYGVEVFVGETAHFEIE-LSEPDVHGQWKLKGQ-------PLAASPDCEII 54
Query: 546 DN----VLTIRYLNPERDPAMYQCRAKNQLKTRYSSAQLRV 582
++ +L + +A N S+A L+V
Sbjct: 55 EDGKKHILILHNCQLG-MTGEVSFQAANT----KSAANLKV 90
Score = 42.7 bits (101), Expect = 3e-05
Identities = 13/70 (18%), Positives = 20/70 (28%), Gaps = 15/70 (21%)
Query: 710 DVAYIWTHNGVRIGNMDLNELETPNINI--DGGL--LEITNASFADAGEYECVVKSTVGK 765
DV W G + +P+ I DG L + N GE
Sbjct: 33 DVHGQWKLKGQPLA-------ASPDCEIIEDGKKHILILHNCQLGMTGEVSFQ----AAN 81
Query: 766 ISTKTTVIVE 775
+ + V+
Sbjct: 82 TKSAANLKVK 91
Score = 41.1 bits (97), Expect = 1e-04
Identities = 12/98 (12%), Positives = 25/98 (25%), Gaps = 17/98 (17%)
Query: 187 PRGPYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPL 246
K V ++ P+ +W + +
Sbjct: 3 MALIEVEKPLYGV--EVFVGE---TAHFEIELS-EPDVHGQWKLKGQP--------LAAS 48
Query: 247 SDKRFTLSGGN--LIINDPRQVEDRGSYHCKASNKFGS 282
D G LI+++ Q+ G +A+N +
Sbjct: 49 PDCEIIEDGKKHILILHNC-QLGMTGEVSFQAANTKSA 85
Score = 30.3 bits (69), Expect = 0.62
Identities = 11/58 (18%), Positives = 17/58 (29%), Gaps = 8/58 (13%)
Query: 322 NYPGVNYYWARDYFPNFVEEDKRVFVSYDGA---LYFSALEQIDAGNYSC---NVQSK 373
+ P V+ W P + + DG L + G S N +S
Sbjct: 30 SEPDVHGQWKLKGQP--LAASPDCEIIEDGKKHILILHNCQLGMTGEVSFQAANTKSA 85
>3s35_X Vascular endothelial growth factor receptor 2; antibody, KDR, VEGF
receptor, cancer, immune system-transfer complex; HET:
NAG; 2.20A {Homo sapiens} PDB: 3s36_X 3s37_X
Length = 122
Score = 70.9 bits (173), Expect = 9e-15
Identities = 20/92 (21%), Positives = 32/92 (34%), Gaps = 14/92 (15%)
Query: 412 KAGDKVRLECVAFGYPVPSYNWTR--------------RGSPLPRNAYFENFNRILTIPN 457
G+K+ L C A ++ R + + F LTI
Sbjct: 21 SVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLSTLTIDG 80
Query: 458 VKVEDQGEYICRASNDRSALESSVTISIQAEP 489
V DQG Y C AS+ ++S + + +P
Sbjct: 81 VTRSDQGLYTCAASSGLMTKKNSTFVRVHEKP 112
Score = 68.2 bits (166), Expect = 7e-14
Identities = 21/98 (21%), Positives = 34/98 (34%), Gaps = 5/98 (5%)
Query: 686 PPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNM-----DLNELETPNINIDGG 740
I ++ L L C+A TE + + + W + + + DL +
Sbjct: 15 SHGIELSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLS 74
Query: 741 LLEITNASFADAGEYECVVKSTVGKISTKTTVIVEGPP 778
L I + +D G Y C S + T V V P
Sbjct: 75 TLTIDGVTRSDQGLYTCAASSGLMTKKNSTFVRVHEKP 112
Score = 58.2 bits (140), Expect = 3e-10
Identities = 17/111 (15%), Positives = 32/111 (28%), Gaps = 17/111 (15%)
Query: 586 KPSFKKRPLE----SETYAGEGGNVTIFCNPEAAPKPK--FVWKKDGNIIGSG------- 632
P ++ + G + + C F W+ +
Sbjct: 2 DPGYRIYDVVLSPSHGIELSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDL 61
Query: 633 ----GRRKIFENGNLLISPVSRDDSGIYSCTATNVHGMDESKGRLIVLHGP 679
G L I V+R D G+Y+C A++ ++ + V P
Sbjct: 62 KTQSGSEMKKFLSTLTIDGVTRSDQGLYTCAASSGLMTKKNSTFVRVHEKP 112
Score = 49.7 bits (118), Expect = 2e-07
Identities = 17/83 (20%), Positives = 29/83 (34%), Gaps = 6/83 (7%)
Query: 212 ITLSCYAGGYPNPSYEWFKE----DYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVE 267
+ L+C A N ++ E + +LV + S L I+
Sbjct: 26 LVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLSTLTIDGV-TRS 84
Query: 268 DRGSYHCKASNKFGSIISESVQL 290
D+G Y C AS+ + S +
Sbjct: 85 DQGLYTCAASSGLMT-KKNSTFV 106
Score = 47.0 bits (111), Expect = 2e-06
Identities = 21/109 (19%), Positives = 37/109 (33%), Gaps = 14/109 (12%)
Query: 487 AEPNFTI------PLTDKHMDNQADLTWTCEAFGVPD--VTYSWFRNGELLN-----SET 533
A+P + I P + L C A + + ++W +
Sbjct: 1 ADPGYRIYDVVLSPSHGIELSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRD 60
Query: 534 LPLEDQDRYFIQDNVLTIRYLNPERDPAMYQCRAKNQLKTRYSSAQLRV 582
L + + LTI + D +Y C A + L T+ +S +RV
Sbjct: 61 LKTQSGSEMKKFLSTLTIDGVTRS-DQGLYTCAASSGLMTKKNSTFVRV 108
Score = 28.9 bits (64), Expect = 2.9
Identities = 8/53 (15%), Positives = 17/53 (32%)
Query: 322 NYPGVNYYWARDYFPNFVEEDKRVFVSYDGALYFSALEQIDAGNYSCNVQSKV 374
YP + + + + + L + + D G Y+C S +
Sbjct: 45 EYPSSKHQHKKLVNRDLKTQSGSEMKKFLSTLTIDGVTRSDQGLYTCAASSGL 97
>3eow_R Poliovirus receptor; immunoglobulin super family, alternative
splicing, cell adhesion, cell membrane, glycoprotein,
HOST-virus interaction; 3.50A {Homo sapiens} PDB: 3uro_R
3epc_R* 3epd_R* 3epf_R*
Length = 221
Score = 73.6 bits (180), Expect = 9e-15
Identities = 27/202 (13%), Positives = 59/202 (29%), Gaps = 32/202 (15%)
Query: 413 AGDKVRLECVAFGYPVPSYN-----WTRRGSPLPRNAYFENFNRI--------------- 452
GD V L C + + W R G + +
Sbjct: 13 LGDSVTLPCYLQVPNMEVTHVSQLTWARHGESGSMAVFHQTQGPSYSESKRLEFVAARLG 72
Query: 453 -------LTIPNVKVEDQGEYICRASNDRS-ALESSVTISIQAEPNFTIPLTDKHMDNQA 504
L + ++VED+G Y C + + + + A+P T + + +
Sbjct: 73 AELRDASLRMFGLRVEDEGSYTCLFVTFPQGSRSVDIWLRVLAKPQNTAEVQKVQLTGEP 132
Query: 505 DLTWTCEAFGV-PDVTYSWFRNGELLNSETLPLEDQDRYFIQDNVLTIRYLNPERDPAMY 563
C + G P +W + + + ++ + + + D
Sbjct: 133 VPMARCVSTGGRPPAQITWHSDLGGMPQTSQVPGFLSGTVTVTSLWILV-PSSQVDGKQV 191
Query: 564 QCRAKNQL--KTRYSSAQLRVL 583
C+ +++ K + + L V
Sbjct: 192 TCKVEHESFEKPQLLTVSLTVY 213
Score = 55.5 bits (133), Expect = 1e-08
Identities = 30/194 (15%), Positives = 58/194 (29%), Gaps = 14/194 (7%)
Query: 492 TIPLTDKHMDNQADLTWTCEAFGVPDVTYSWFRNGELLNSETLPLE-DQDRYFIQDNVLT 550
+ + + + + + LTW + + S+ L + ++D L
Sbjct: 22 YLQVPNMEVTHVSQLTWARHGESGSMAVFHQTQGPSYSESKRLEFVAARLGAELRDASLR 81
Query: 551 IRYLNPERDPAMYQCRAKNQ-LKTRYSSAQLRVLTLKPSFKKRPLESETYAGEGGNVTIF 609
+ L E D Y C +R LRVL KP +
Sbjct: 82 MFGLRVE-DEGSYTCLFVTFPQGSRSVDIWLRVLA-KPQ--NTAEVQKVQLTGEPVPMAR 137
Query: 610 CN-PEAAPKPKFVWKKDGNIIGSGGRRKIFENG------NLLISPVSRDDSGIYSCTATN 662
C P + W D + + F +G ++ P S+ D +C +
Sbjct: 138 CVSTGGRPPAQITWHSDLGGMPQTSQVPGFLSGTVTVTSLWILVPSSQVDGKQVTCKVEH 197
Query: 663 VHGMDESKGRLIVL 676
++ + + L
Sbjct: 198 E-SFEKPQLLTVSL 210
Score = 46.6 bits (110), Expect = 1e-05
Identities = 31/223 (13%), Positives = 58/223 (26%), Gaps = 51/223 (22%)
Query: 595 ESETYAGEGGNVTIFC----NPEAAPKPKFV-WKKDGN-----IIGSGGRRKIFE----- 639
++ G +VT+ C + W + G + E
Sbjct: 6 PTQVPGFLGDSVTLPCYLQVPNMEVTHVSQLTWARHGESGSMAVFHQTQGPSYSESKRLE 65
Query: 640 -----------NGNLLISPVSRDDSGIYSCT-ATNVHGMDESKGRLIVLHGPSYYEQLPP 687
+ +L + + +D G Y+C T G L VL P +
Sbjct: 66 FVAARLGAELRDASLRMFGLRVEDEGSYTCLFVTFPQGSRSVDIWLRVLAKPQNTAE-VQ 124
Query: 688 KITIAAHRNLQLRCSAHTEELLDVAY-----IWTHNGVRIGNMDLNELETPNINIDG--- 739
K+ + RC + W + + + + G
Sbjct: 125 KVQLTGEPVPMARCVSTG------GRPPAQITWHSDLGGM-----PQTSQVPGFLSGTVT 173
Query: 740 --GLLEITNASFADAGEYECVVK--STVGKISTKTTVIVEGPP 778
L + +S D + C V+ S ++ V P
Sbjct: 174 VTSLWILVPSSQVDGKQVTCKVEHESFEKPQLLTVSLTVYYPH 216
Score = 41.2 bits (96), Expect = 8e-04
Identities = 15/82 (18%), Positives = 24/82 (29%), Gaps = 6/82 (7%)
Query: 211 DITLSCYA-GGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVEDR 269
C + GG P W + + T++ +L I P D
Sbjct: 133 VPMARCVSTGGRPPAQITWHSDLGGMPQTSQVPGFL--SGTVTVT--SLWILVPSSQVDG 188
Query: 270 GSYHCKASNK-FGSIISESVQL 290
CK ++ F +V L
Sbjct: 189 KQVTCKVEHESFEKPQLLTVSL 210
Score = 38.1 bits (88), Expect = 0.007
Identities = 30/209 (14%), Positives = 47/209 (22%), Gaps = 31/209 (14%)
Query: 211 DITLSCYAGGYPNPSY-----EWFKEDYVQDRLVANLI---DPLSDKRFTLSG------- 255
+TL CY W + V + KR
Sbjct: 16 SVTLPCYLQVPNMEVTHVSQLTWARHGESGSMAVFHQTQGPSYSESKRLEFVAARLGAEL 75
Query: 256 --GNLIINDPRQVEDRGSYHCKASNKFGSIISESVQLAFGFIGEFNLKRAPEIGNQNWGK 313
+L + +VED GSY C S + L + +
Sbjct: 76 RDASLRMFGL-RVEDEGSYTCLFVTFPQGSRSVDIWLRVLAKPQNTAEVQKVQLTGEPVP 134
Query: 314 AMFCDPPTNYPGVNYYWARDYFPNFVEE------DKRVFVSYDGALYFSALEQIDAGNYS 367
C P W D V V+ Q+D +
Sbjct: 135 MARCVSTGGRPPAQITWHSDLGGMPQTSQVPGFLSGTVTVT--SLWILVPSSQVDGKQVT 192
Query: 368 CNVQSKVSDTGRNGPF-----FPLKVFPH 391
C V+ + + + +P H
Sbjct: 193 CKVEHESFEKPQLLTVSLTVYYPHHHHHH 221
>2yuz_A Myosin-binding protein C, SLOW-type; immunoglobulin domain,
SLOW-type myosin-binding protein C, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 100
Score = 68.9 bits (169), Expect = 2e-14
Identities = 21/92 (22%), Positives = 35/92 (38%), Gaps = 8/92 (8%)
Query: 592 RPLESETYAGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGN---LLISPV 648
PL +T G + + C E + W K+G + R K+ + G L+I+
Sbjct: 12 TPLTDQT-VNLGKEICLKC--EISENIPGKWTKNGLPVQESDRLKVVQKGRIHKLVIANA 68
Query: 649 SRDDSGIYSCTATNVHGMDESKGRLIVLHGPS 680
+D G Y ++ V+ GPS
Sbjct: 69 LTEDEGDYVFAPDA--YNVTLPAKVHVISGPS 98
Score = 56.2 bits (136), Expect = 5e-10
Identities = 15/83 (18%), Positives = 29/83 (34%), Gaps = 8/83 (9%)
Query: 412 KAGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYF----ENFNRILTIPNVKVEDQGEYI 467
G ++ L+C WT+ G P+ + + L I N ED+G+Y+
Sbjct: 20 NLGKEICLKCEISENIPGK--WTKNGLPVQESDRLKVVQKGRIHKLVIANALTEDEGDYV 77
Query: 468 CRASNDRSALESSVTISIQAEPN 490
+ + + P+
Sbjct: 78 FAPDAYNV--TLPAKVHVISGPS 98
Score = 54.3 bits (131), Expect = 3e-09
Identities = 20/101 (19%), Positives = 34/101 (33%), Gaps = 16/101 (15%)
Query: 487 AEPNFTIPLTDKHMDNQADLTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQD 546
+ PLTD+ ++ ++ CE W +NG P+++ DR +
Sbjct: 6 SGLKILTPLTDQTVNLGKEICLKCEISENIPGK--WTKNGL-------PVQESDRLKVVQ 56
Query: 547 N----VLTIRYLNPERDPAMYQCRAKNQLKTRYSSAQLRVL 583
L I E D Y T A++ V+
Sbjct: 57 KGRIHKLVIANALTE-DEGDYVFAPDAYNVT--LPAKVHVI 94
Score = 51.6 bits (124), Expect = 3e-08
Identities = 21/105 (20%), Positives = 37/105 (35%), Gaps = 24/105 (22%)
Query: 686 PPKI-------TIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINI- 737
KI T+ + + L+C ++ WT NG+ + E+ + +
Sbjct: 7 GLKILTPLTDQTVNLGKEICLKCEISE----NIPGKWTKNGLPVQ-------ESDRLKVV 55
Query: 738 -DGGL--LEITNASFADAGEYECVVKSTVGKISTKTTVIVEGPPG 779
G + L I NA D G+Y + ++ V V P
Sbjct: 56 QKGRIHKLVIANALTEDEGDYVFAPDA--YNVTLPAKVHVISGPS 98
Score = 38.9 bits (91), Expect = 8e-04
Identities = 18/97 (18%), Positives = 26/97 (26%), Gaps = 18/97 (18%)
Query: 188 RGPYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLS 247
G + TD +L K I L C N +W K +
Sbjct: 6 SGLKILTPLTDQTVNLGKE-----ICLKCEISE--NIPGKWTKNG--------LPVQESD 50
Query: 248 DKRFTLSGGN--LIINDPRQVEDRGSYHCKASNKFGS 282
+ G L+I + ED G Y +
Sbjct: 51 RLKVVQKGRIHKLVIANA-LTEDEGDYVFAPDAYNVT 86
Score = 28.1 bits (63), Expect = 4.2
Identities = 11/47 (23%), Positives = 18/47 (38%), Gaps = 5/47 (10%)
Query: 330 WARDYFPNFVEEDKRVFVSYDGA---LYFSALEQIDAGNYSCNVQSK 373
W ++ P V+E R+ V G L + D G+Y +
Sbjct: 39 WTKNGLP--VQESDRLKVVQKGRIHKLVIANALTEDEGDYVFAPDAY 83
>2crm_A Fibronectin type-III domain containing protein 3A; structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
b.1.2.1
Length = 120
Score = 69.4 bits (170), Expect = 2e-14
Identities = 21/121 (17%), Positives = 32/121 (26%), Gaps = 12/121 (9%)
Query: 767 STKTTVIVEGPPGLPGGVQVV-EVHKTSATIQWTDGATNGR-PITHYKIIARTNWNSTWF 824
PG+P V ++H S I W NG I Y + N +
Sbjct: 7 GVVEFTTCPDKPGIPVKPSVKGKIHSHSFKITWDPPKDNGGATINKYVVEMAEGSNGNKW 66
Query: 825 NVSEHVIGKEVDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPSPQYNTPADK 884
+ +E + L P Y +V ++ G S
Sbjct: 67 EMIYSGATRE---------HLCDR-LNPGCFYRLRVYCISDGGQSAVSESLLVQTPAVSG 116
Query: 885 P 885
P
Sbjct: 117 P 117
Score = 39.0 bits (91), Expect = 0.001
Identities = 23/125 (18%), Positives = 37/125 (29%), Gaps = 32/125 (25%)
Query: 867 GYGEPSSPSPQYNTPADKPYQAPSRIGGGGGKIGD-LSISWEPLPREKQNAPNIYYKIFW 925
G S + T DKP P + G I+W+P P++ A Y +
Sbjct: 1 GSSGSSGVVE-FTTCPDKP-GIPVKPSVKGKIHSHSFKITWDP-PKDNGGATINKYVVEM 57
Query: 926 RKKND------------TEFQSETLKEYGNVGIAVVRIPSEFYYTEYEVKVQAINDVGPG 973
+ ++ E + L Y ++V I+D G
Sbjct: 58 AEGSNGNKWEMIYSGATREHLCDRLNPG----------------CFYRLRVYCISDGGQS 101
Query: 974 PESEV 978
SE
Sbjct: 102 AVSES 106
>2ed8_A Netrin receptor DCC; tumor suppressor protein DCC, colorectal
cancer suppressor, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 106
Score = 68.4 bits (168), Expect = 3e-14
Identities = 19/101 (18%), Positives = 30/101 (29%), Gaps = 12/101 (11%)
Query: 775 EGPPGLPGGVQVVEVHKTSATIQWTDGATNGRPITHYKIIARTNWNSTWFNVSEHVIGKE 834
PG +Q V TS I W A P+ Y++ N+
Sbjct: 5 SSGPGPVENLQAVSTSPTSILITWEPPAYANGPVQGYRLFCTEVSTGKEQNIE------- 57
Query: 835 VDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPS 875
+E L ++ Y + +A N G G +
Sbjct: 58 ----VDGLSYKLEG-LKKFTEYSLRFLAYNRYGPGVSTDDI 93
Score = 49.2 bits (118), Expect = 2e-07
Identities = 19/84 (22%), Positives = 34/84 (40%), Gaps = 22/84 (26%)
Query: 902 LSISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETLKEYGNVGIAVVRIPSEFY----- 956
+ I+WEP P N P Y++F + + + Q+ + + Y
Sbjct: 24 ILITWEP-P-AYANGPVQGYRLFCTEVSTGKEQN-------------IEVDGLSYKLEGL 68
Query: 957 --YTEYEVKVQAINDVGPGPESEV 978
+TEY ++ A N GPG ++
Sbjct: 69 KKFTEYSLRFLAYNRYGPGVSTDD 92
>2eo1_A OBSCN protein, cDNA FLJ14124 FIS, clone mamma1002498;
beta-sandwich, IG-fold, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 102
Score = 68.2 bits (167), Expect = 4e-14
Identities = 25/103 (24%), Positives = 43/103 (41%), Gaps = 14/103 (13%)
Query: 576 SSAQLRVLTLKPSFKKRPLESETYAGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRR 635
SS ++ K++P E A G + T+ C A + + W KDG + S +
Sbjct: 5 SSGKVVFA------KEQPAHREVQAEAGASATLSCEV-AQAQTEVTWYKDGKKLSSSSKV 57
Query: 636 KIFENGN---LLISPVSRDDSGIYSCTATNVHGMDESKGRLIV 675
++ G L++ + ++G YSC A + RL V
Sbjct: 58 RVEAVGCTRRLVVQQAGQAEAGEYSCEAGG----QQLSFRLQV 96
Score = 61.7 bits (150), Expect = 8e-12
Identities = 16/98 (16%), Positives = 26/98 (26%), Gaps = 17/98 (17%)
Query: 404 PKTFPEAPKA--------GDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYF----ENFNR 451
F + A G L C W + G L ++ R
Sbjct: 8 KVVFAKEQPAHREVQAEAGASATLSCEV-AQAQTEVTWYKDGKKLSSSSKVRVEAVGCTR 66
Query: 452 ILTIPNVKVEDQGEYICRASNDRSALESSVTISIQAEP 489
L + + GEY C A + S + + +
Sbjct: 67 RLVVQQAGQAEAGEYSCEAGGQ----QLSFRLQVAGQC 100
Score = 49.3 bits (118), Expect = 2e-07
Identities = 21/116 (18%), Positives = 39/116 (33%), Gaps = 22/116 (18%)
Query: 665 GMDESKGRLIVLHGPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGN 724
G S G+++ + + + A + L C + +V W +G ++
Sbjct: 1 GSSGSSGKVVFAKEQPAHRE----VQAEAGASATLSCEV-AQAQTEV--TWYKDGKKLS- 52
Query: 725 MDLNELETPNINI--DGGL--LEITNASFADAGEYECVVKSTVGKISTKTTVIVEG 776
+ + + G L + A A+AGEY C G + V G
Sbjct: 53 ------SSSKVRVEAVGCTRRLVVQQAGQAEAGEYSCE----AGGQQLSFRLQVAG 98
Score = 45.5 bits (108), Expect = 3e-06
Identities = 15/98 (15%), Positives = 31/98 (31%), Gaps = 17/98 (17%)
Query: 489 PNFTIPLTDKHMDNQADLTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQDN- 547
+ + A T +CE +W+++G+ L + ++
Sbjct: 12 AKEQPAHREVQAEAGASATLSCEV-AQAQTEVTWYKDGK-------KLSSSSKVRVEAVG 63
Query: 548 ---VLTIRYLNPERDPAMYQCRAKNQLKTRYSSAQLRV 582
L ++ + Y C A Q S +L+V
Sbjct: 64 CTRRLVVQQAGQA-EAGEYSCEAGGQ----QLSFRLQV 96
Score = 39.3 bits (92), Expect = 6e-04
Identities = 15/74 (20%), Positives = 23/74 (31%), Gaps = 12/74 (16%)
Query: 211 DITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGN--LIINDPRQVED 268
TLSC W+K+ + S R G L++ +
Sbjct: 28 SATLSCEVAQ-AQTEVTWYKDG--------KKLSSSSKVRVEAVGCTRRLVVQQA-GQAE 77
Query: 269 RGSYHCKASNKFGS 282
G Y C+A + S
Sbjct: 78 AGEYSCEAGGQQLS 91
Score = 30.1 bits (68), Expect = 0.99
Identities = 12/55 (21%), Positives = 17/55 (30%), Gaps = 5/55 (9%)
Query: 324 PGVNYYWARDYFPNFVEEDKRVFVSYDGA---LYFSALEQIDAGNYSCNVQSKVS 375
W +D + +V V G L Q +AG YSC +
Sbjct: 38 AQTEVTWYKDGKK--LSSSSKVRVEAVGCTRRLVVQQAGQAEAGEYSCEAGGQQL 90
>1tdq_B Aggrecan core protein; extracellular matrix, lecticans, tenascins,
protein-protein interactions, C-type lectin domain;
2.60A {Rattus norvegicus} SCOP: d.169.1.1
Length = 130
Score = 69.3 bits (170), Expect = 4e-14
Identities = 19/86 (22%), Positives = 38/86 (44%), Gaps = 8/86 (9%)
Query: 28 RCPQHWVQYRDSCYRFVKSPLKTRNDAKLNCKSLDSDLANVNDADEHGFIMYQLFWQDPQ 87
+C + W +++ CYR +T DA+ C+ S L+++ +E F+ ++ Q
Sbjct: 6 QCEEGWTKFQGHCYRHFPDR-ETWVDAERRCREQQSHLSSIVTPEEQEFV-----NKNAQ 59
Query: 88 RRKWYFGGT-QQSPNLWVNEDGTNLN 112
+W G + + DG +L
Sbjct: 60 DYQW-IGLNDRTIEGDFRWSDGHSLQ 84
>3bn3_B ICAM-5, intercellular adhesion molecule 5, telencephalin; I domain,
integrin, allosteric mobility, cell adhesi immune
system; HET: NAG; 2.10A {Homo sapiens}
Length = 196
Score = 70.9 bits (173), Expect = 4e-14
Identities = 36/194 (18%), Positives = 61/194 (31%), Gaps = 23/194 (11%)
Query: 408 PEAP--KAGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYFENFN-RILTIPNVKVEDQG 464
P + G + L C + L RN + +++ E +
Sbjct: 9 PRVAFVERGGSLWLNCSTNCPRPERGGLE---TSLRRNGTQRGLRWLARQLVDIR-EPET 64
Query: 465 EYICRASNDRSALESSVTISIQAEP-NFTIPLTDKHMDNQADLTWTCEAFGV---PDVTY 520
+ +C R L++ I P + + T +C G +T
Sbjct: 65 QPVCFFRCARRTLQARGLIRTFQRPDRVELMPLPPWQPVGENFTLSCRVPGAGPRASLTL 124
Query: 521 SWFRNGELLNSETLPLEDQDRYFIQDNVLTIRYL-NPERDPAMYQCRAKNQLKT------ 573
+ R + L + E + VLT L E A + CRA+ L+
Sbjct: 125 TLLRGAQELIRRSFAGEPPRA---RGAVLTATVLARREDHGANFSCRAELDLRPHGLGLF 181
Query: 574 RYSSA--QLRVLTL 585
SSA +LR +L
Sbjct: 182 ENSSAPRELRTFSL 195
Score = 42.8 bits (100), Expect = 2e-04
Identities = 14/108 (12%), Positives = 24/108 (22%), Gaps = 10/108 (9%)
Query: 563 YQCRAKNQLKTRYSSAQLRVLTLKPSFKKRPLESETYAGEGGNVTIFC---NPEAAPKPK 619
C + +T + +R + PL GE N T+ C
Sbjct: 66 PVCFFRCARRTLQARGLIRTFQRPDRVELMPLPPWQPVGE--NFTLSCRVPGAGPRASLT 123
Query: 620 FVWKKDGNIIGSGGRRKIFENGN-----LLISPVSRDDSGIYSCTATN 662
+ + + D +SC A
Sbjct: 124 LTLLRGAQELIRRSFAGEPPRARGAVLTATVLARREDHGANFSCRAEL 171
Score = 34.3 bits (78), Expect = 0.100
Identities = 7/96 (7%), Positives = 20/96 (20%), Gaps = 12/96 (12%)
Query: 686 PPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEIT 745
P + +L L CS + + + ++
Sbjct: 9 PRVAFVERGGSLWLNCSTNCPRPERGGLETSLRRNGTQR-----------GLRWLARQLV 57
Query: 746 NASFADAGEYECVVKSTVGKISTKTTVIVEGPPGLP 781
+ + C + + + + P
Sbjct: 58 DIR-EPETQPVCFFRCARRTLQARGLIRTFQRPDRV 92
>1ypq_A Oxidised low density lipoprotein (lectin-like) receptor 1; oxidized
low density lipoprotein receptor, LOX-1, CTLD, C- type
lectin like domain; 1.40A {Homo sapiens} SCOP: d.169.1.1
PDB: 1ypu_A 1yxk_A 3vlg_A 1ypo_A 1yxj_A
Length = 135
Score = 69.0 bits (169), Expect = 6e-14
Identities = 27/131 (20%), Positives = 51/131 (38%), Gaps = 10/131 (7%)
Query: 29 CPQHWVQYRDSCYRFVKSPLKTRNDAKLNCKSLDSDLANVNDADEHGFIMYQLFWQDPQR 88
CPQ W+ + ++CY F ++ C SLD+ L +N + FI +
Sbjct: 9 CPQDWIWHGENCYLFSSGS-FNWEKSQEKCLSLDAKLLKINSTADLDFIQQAI---SYSS 64
Query: 89 RKWYFGGTQQSPN-LWVNEDGTNLNELDAAFLPEPADNVQRDYLAYSFSQSLKRWGFERV 147
++ G ++++P+ W+ EDG+ L + AY ++R
Sbjct: 65 FPFWMGLSRRNPSYPWLWEDGSPLMPHLFRVRGAVSQTYPSGTCAY-----IQRGAVYAE 119
Query: 148 TGMEPLLFICE 158
+ IC+
Sbjct: 120 NCILAAFSICQ 130
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG
containing, ligand binding protein,membr protein; HET:
NAG MAN; 2.70A {Homo sapiens}
Length = 477
Score = 74.4 bits (183), Expect = 6e-14
Identities = 23/84 (27%), Positives = 32/84 (38%), Gaps = 3/84 (3%)
Query: 595 ESETYAGEGGNVTIFCNPEAAPKPKFVWKKDGNII---GSGGRRKIFENGNLLISPVSRD 651
+ + EG V C + P P +W + S GR +F +G L +
Sbjct: 392 AQQVFVDEGHTVQFVCRADGDPPPAILWLSPRKHLVSAKSNGRLTVFPDGTLEVRYAQVQ 451
Query: 652 DSGIYSCTATNVHGMDESKGRLIV 675
D+G Y C A N G D L V
Sbjct: 452 DNGTYLCIAANAGGNDSMPAHLHV 475
Score = 55.9 bits (135), Expect = 4e-08
Identities = 19/101 (18%), Positives = 33/101 (32%), Gaps = 4/101 (3%)
Query: 391 HSNFQQLKFPNNFPKTFPEAPKAGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYFENF- 449
+ F + K G V+ C A G P P+ W L
Sbjct: 377 PNYFTCRRARIRDRKAQQVFVDEGHTVQFVCRADGDPPPAILWLSPRKHLVSAKSNGRLT 436
Query: 450 ---NRILTIPNVKVEDQGEYICRASNDRSALESSVTISIQA 487
+ L + +V+D G Y+C A+N + +++
Sbjct: 437 VFPDGTLEVRYAQVQDNGTYLCIAANAGGNDSMPAHLHVRS 477
Score = 50.5 bits (121), Expect = 2e-06
Identities = 17/97 (17%), Positives = 33/97 (34%), Gaps = 5/97 (5%)
Query: 678 GPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINI 737
++ ++ + +Q C A + + +W + + N T +
Sbjct: 384 RARIRDRKAQQVFVDEGHTVQFVCRADGDPPPAI--LWLSPRKHLVSAKSNGRLTVFPD- 440
Query: 738 DGGLLEITNASFADAGEYECVVKSTVGKISTKTTVIV 774
G LE+ A D G Y C+ + G S + V
Sbjct: 441 --GTLEVRYAQVQDNGTYLCIAANAGGNDSMPAHLHV 475
Score = 47.4 bits (113), Expect = 2e-05
Identities = 23/82 (28%), Positives = 34/82 (41%), Gaps = 10/82 (12%)
Query: 210 NDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFT-LSGGNLIINDPRQVED 268
+ + C A G P P+ W +L+ S+ R T G L + QV+D
Sbjct: 401 HTVQFVCRADGDPPPAILWLSPR-------KHLVSAKSNGRLTVFPDGTLEVRYA-QVQD 452
Query: 269 RGSYHCKASNKFGSIISESVQL 290
G+Y C A+N G+ S L
Sbjct: 453 NGTYLCIAANAGGN-DSMPAHL 473
Score = 39.7 bits (93), Expect = 0.005
Identities = 18/92 (19%), Positives = 27/92 (29%), Gaps = 6/92 (6%)
Query: 492 TIPLTDKHMDNQADLTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQDN-VLT 550
+D + + C A G P W + + R + + L
Sbjct: 389 DRKAQQVFVDEGHTVQFVCRADGDPPPAILWLSP----RKHLVSAKSNGRLTVFPDGTLE 444
Query: 551 IRYLNPERDPAMYQCRAKNQLKTRYSSAQLRV 582
+RY + D Y C A N A L V
Sbjct: 445 VRYAQVQ-DNGTYLCIAANAGGNDSMPAHLHV 475
Score = 30.1 bits (68), Expect = 3.8
Identities = 9/33 (27%), Positives = 13/33 (39%)
Query: 339 VEEDKRVFVSYDGALYFSALEQIDAGNYSCNVQ 371
+ + R+ V DG L + D G Y C
Sbjct: 429 AKSNGRLTVFPDGTLEVRYAQVQDNGTYLCIAA 461
>1x5g_A Neogenin; RGM binding, fibronectin type III domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
b.1.2.1
Length = 116
Score = 68.1 bits (167), Expect = 7e-14
Identities = 19/100 (19%), Positives = 33/100 (33%), Gaps = 12/100 (12%)
Query: 775 EGPPGLPGGVQVVEVHKTSATIQWTDGATNGRPITHYKIIARTNWNSTWFNVSEHVIGKE 834
PG ++ TS T+ W + I +YK+ +V
Sbjct: 15 VQLPGPAPNLRAYAASPTSITVTWETPVSGNGEIQNYKLYYMEKGTDKEQDVD------- 67
Query: 835 VDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSP 874
+I L ++ Y F+V+A N+ G G +
Sbjct: 68 ----VSSHSYTING-LKKYTEYSFRVVAYNKHGPGVSTPD 102
Score = 45.8 bits (109), Expect = 4e-06
Identities = 21/84 (25%), Positives = 33/84 (39%), Gaps = 22/84 (26%)
Query: 902 LSISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETLKEYGNVGIAVVRIPSEFY----- 956
++++WE P N YK+++ +K + Q V + S Y
Sbjct: 34 ITVTWET-P-VSGNGEIQNYKLYYMEKGTDKEQD-------------VDVSSHSYTINGL 78
Query: 957 --YTEYEVKVQAINDVGPGPESEV 978
YTEY +V A N GPG +
Sbjct: 79 KKYTEYSFRVVAYNKHGPGVSTPD 102
>1gsm_A Madcam-1, mucosal addressin cell adhesion molecule-1; cell adhesion
protein, immunoglobulin fold, I-SET fold, cell adhesion
glycoprotein; 1.9A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4
PDB: 1bqs_A*
Length = 210
Score = 70.7 bits (172), Expect = 7e-14
Identities = 25/174 (14%), Positives = 47/174 (27%), Gaps = 15/174 (8%)
Query: 412 KAGDKVRLECVAFG-YPVPSYNWTRRGSPLPRNAYFENFNRILTIPNVKVEDQGEYICRA 470
G +L C S W + L + +LT+ N + G +C
Sbjct: 20 ALGASRQLTCRLACADRGASVQWRGLDTSLGAV-QSDTGRSVLTVRNASLSAAGTRVCVG 78
Query: 471 SNDRSALESSVTISIQAEPNFTIPLTDKHMDNQADLTWTCEAFGVPD---VTYSWFRNGE 527
S + +V + + A PN + ++ T D +++S G+
Sbjct: 79 SCGGRTFQHTVQLLVYAFPNQLTVSPAALVPGDPEVACTAHKVTPVDPNALSFSLLVGGQ 138
Query: 528 LLNSETLPLEDQDRYFIQDNVLTIRYLN----------PERDPAMYQCRAKNQL 571
L + + P C+A +L
Sbjct: 139 ELEGAQALGPEVQEEEEEPQGDEDVLFRVTERWRLPPLGTPVPPALYCQATMRL 192
Score = 60.7 bits (146), Expect = 2e-10
Identities = 19/119 (15%), Positives = 35/119 (29%), Gaps = 6/119 (5%)
Query: 587 PSFKKRPLESETYAGEGGNVTIFCNPE-AAPKPKFVWKKDGNIIGSGGRRKIFENGNLLI 645
+ P E G + + C A W+ +G+ L +
Sbjct: 6 KPLQVEPPEPVVAVALGASRQLTCRLACADRGASVQWRGLDTSLGAVQSDT--GRSVLTV 63
Query: 646 SPVSRDDSGIYSCTATNVHGMDESKGRLIVLHGPSYYEQLPPKITIAAHRNLQLRCSAH 704
S +G C + + +L+V P QL + ++ C+AH
Sbjct: 64 RNASLSAAGTRVCVGSCGGRTFQHTVQLLVYAFP---NQLTVSPAALVPGDPEVACTAH 119
Score = 39.1 bits (90), Expect = 0.004
Identities = 22/126 (17%), Positives = 37/126 (29%), Gaps = 12/126 (9%)
Query: 683 EQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLL 742
E P + +A + QL C + W +G + + +L
Sbjct: 11 EPPEPVVAVALGASRQLTCRL-ACADRGASVQWRGLDTSLGAVQSDT--------GRSVL 61
Query: 743 EITNASFADAGEYECVVKSTVGKISTKTTVIVEGPPGLPGGVQVVEVHKTSATIQWTDGA 802
+ NAS + AG CV ++V P V + + T A
Sbjct: 62 TVRNASLSAAGTRVCVGSCGGRTFQHTVQLLVYAFPNQL-TVSPAALVPGDPEVACT--A 118
Query: 803 TNGRPI 808
P+
Sbjct: 119 HKVTPV 124
Score = 37.2 bits (85), Expect = 0.013
Identities = 27/186 (14%), Positives = 42/186 (22%), Gaps = 38/186 (20%)
Query: 509 TCEAFGVPDV-TYSWFRNGELLNSETLPLEDQDRYFIQDNVLTIRYLNPERDPAMYQCRA 567
TC + W L + + +VLT+R + C
Sbjct: 28 TCRLACADRGASVQWRGLDTSLGAV--------QSDTGRSVLTVRNASLS-AAGTRVCVG 78
Query: 568 KNQLKTRYSSAQLRVLTLKPSFKKRPLESETYAGEGGNVTIFCN-----PEAAPKPKFVW 622
+T + QL V P G+ + C P F
Sbjct: 79 SCGGRTFQHTVQLLVYAFPNQLTVSPAAL-----VPGDPEVACTAHKVTPVDPNALSFSL 133
Query: 623 KKDGNIIGS----------------GGRRKIFENGNLLISPVSRDDSG-IYSCTAT-NVH 664
G + G +F P C AT +
Sbjct: 134 LVGGQELEGAQALGPEVQEEEEEPQGDEDVLFRVTERWRLPPLGTPVPPALYCQATMRLP 193
Query: 665 GMDESK 670
G++ S
Sbjct: 194 GLELSH 199
Score = 34.5 bits (78), Expect = 0.11
Identities = 20/139 (14%), Positives = 33/139 (23%), Gaps = 26/139 (18%)
Query: 190 PYFIKQPTDVVFDLSKRSILNDITLSCYA-GGYPNPSYEWFKEDYVQDRLVANLIDPLSD 248
P ++ P VV S L+C S +W D L
Sbjct: 7 PLQVEPPEPVVAVALGASR----QLTCRLACADRGASVQWRGLD-----------TSLGA 51
Query: 249 KRFTLSGGNLIINDPRQVEDRGSYHCKASNKFGSIISESVQLAFGFIGEFNLKRAPEIGN 308
+ L + + G+ C S + +VQL + +
Sbjct: 52 VQSDTGRSVLTVR-NASLSAAGTRVCVGSCGGRT-FQHTVQLLV-----YAFPNQLTVSP 104
Query: 309 Q---NWGKAMFCDPPTNYP 324
+ C P
Sbjct: 105 AALVPGDPEVACTAHKVTP 123
>2dku_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 103
Score = 67.4 bits (165), Expect = 7e-14
Identities = 22/92 (23%), Positives = 37/92 (40%), Gaps = 10/92 (10%)
Query: 587 PSFKKRPLESETYAGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGN---L 643
F + L + E G C E P W+K + + G+ + + G L
Sbjct: 9 NCFTE-ELTNLQ-VEEKGTAVFTCKTEH-PAATVTWRKGLLELRASGKHQPSQEGLTLRL 65
Query: 644 LISPVSRDDSGIYSCTATNVHGMDESKGRLIV 675
IS + + DS Y+C G +S+ +L+V
Sbjct: 66 TISALEKADSDTYTCDI----GQAQSRAQLLV 93
Score = 57.7 bits (140), Expect = 2e-10
Identities = 13/80 (16%), Positives = 22/80 (27%), Gaps = 9/80 (11%)
Query: 414 GDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYF----ENFNRILTIPNVKVEDQGEYICR 469
C +P + W + L + E LTI ++ D Y C
Sbjct: 23 KGTAVFTCKT-EHPAATVTWRKGLLELRASGKHQPSQEGLTLRLTISALEKADSDTYTCD 81
Query: 470 ASNDRSALESSVTISIQAEP 489
+ S + +Q
Sbjct: 82 IGQAQ----SRAQLLVQGRR 97
Score = 53.9 bits (130), Expect = 4e-09
Identities = 22/106 (20%), Positives = 33/106 (31%), Gaps = 17/106 (16%)
Query: 489 PNFTIPLTDKHMDNQADLTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQDN- 547
FT LT+ ++ + +TC+ P T +W + L ++
Sbjct: 9 NCFTEELTNLQVEEKGTAVFTCKT-EHPAATVTWRKGLL-------ELRASGKHQPSQEG 60
Query: 548 ---VLTIRYLNPERDPAMYQCRAKNQLKTRYSSAQLRVLTLKPSFK 590
LTI L D Y C S AQL V +
Sbjct: 61 LTLRLTISALEKA-DSDTYTCDIGQAQ----SRAQLLVQGRRSGPS 101
Score = 46.9 bits (112), Expect = 1e-06
Identities = 12/72 (16%), Positives = 25/72 (34%), Gaps = 15/72 (20%)
Query: 714 IWTHNGVRIGNMDLNELETPNINI--DGGL--LEITNASFADAGEYECVVKSTVGKISTK 769
W + + + +G L I+ AD+ Y C +G+ ++
Sbjct: 40 TWRKGLLEL-------RASGKHQPSQEGLTLRLTISALEKADSDTYTCD----IGQAQSR 88
Query: 770 TTVIVEGPPGLP 781
++V+G P
Sbjct: 89 AQLLVQGRRSGP 100
Score = 40.0 bits (94), Expect = 3e-04
Identities = 12/95 (12%), Positives = 25/95 (26%), Gaps = 17/95 (17%)
Query: 190 PYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDK 249
F ++ T++ + +C P + W K +
Sbjct: 9 NCFTEELTNLQVEEKG-----TAVFTCKTEH-PAATVTWRKGL--------LELRASGKH 54
Query: 250 RFTLSGGN--LIINDPRQVEDRGSYHCKASNKFGS 282
+ + G L I+ + D +Y C
Sbjct: 55 QPSQEGLTLRLTISAL-EKADSDTYTCDIGQAQSR 88
Score = 28.1 bits (63), Expect = 5.4
Identities = 12/50 (24%), Positives = 21/50 (42%), Gaps = 5/50 (10%)
Query: 324 PGVNYYWARDYFPNFVEEDKRVFVSYDGA---LYFSALEQIDAGNYSCNV 370
P W + + + S +G L SALE+ D+ Y+C++
Sbjct: 35 PAATVTWRKGLLE--LRASGKHQPSQEGLTLRLTISALEKADSDTYTCDI 82
>1sl6_A C-type lectin DC-signr; sugar binding protein; HET: GAL NDG FUC;
2.25A {Homo sapiens} SCOP: d.169.1.1 PDB: 1xar_A
Length = 184
Score = 69.9 bits (171), Expect = 8e-14
Identities = 21/95 (22%), Positives = 38/95 (40%), Gaps = 5/95 (5%)
Query: 19 SQTIDELELRCPQHWVQYRDSCYRFVKSPLKTRNDAKLNCKSLDSDLANVNDADEHGFIM 78
+ L CP+ W ++ +CY S + +D+ C+ + + L + A+E F+
Sbjct: 43 KTAFERLCRHCPKDWTFFQGNCYFMSNSQ-RNWHDSVTACQEVRAQLVVIKTAEEQNFLQ 101
Query: 79 YQLFWQDPQRRKWYFGGT-QQSPNLWVNEDGTNLN 112
Q R W G + W DG+ L+
Sbjct: 102 LQT--SRSNRFSW-MGLSDLNQEGTWQWVDGSPLS 133
>2if7_A SLAM family member 6; NTB-A, homophilic receptor, immune system;
3.00A {Homo sapiens}
Length = 193
Score = 70.0 bits (171), Expect = 1e-13
Identities = 30/191 (15%), Positives = 62/191 (32%), Gaps = 34/191 (17%)
Query: 602 EGGNVTIFCNPEAAPKPKFV-WKKDGNII------------------GSGGRRKIFENGN 642
G +VT+ A K F+ W + + G R ++ +
Sbjct: 12 LGESVTLPLEFPAGEKVNFITWLFNETSLAFIVPHETKSPEIHVTNPKQGKRLNFTQSYS 71
Query: 643 LLISPVSRDDSGIYSCTATNVHGMDESKGRLIVLHGPSYYE-QLPPKITIAAHRNLQLRC 701
L +S + +D+G Y + S L +L + ++ L L C
Sbjct: 72 LQLSNLKMEDTGSYRAQISTKTSAKLSSYTLRILRQLRNIQVTNHSQLFQNMTCELHLTC 131
Query: 702 SAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEITNASFADAGEYECVVKS 761
S + +V++ W G + PN+ + + + +Y C+ ++
Sbjct: 132 SVEDAD-DNVSFRWEALGNTL-------SSQPNLTV------SWDPRISSEQDYTCIAEN 177
Query: 762 TVGKISTKTTV 772
V +S +
Sbjct: 178 AVSNLSFSVSA 188
Score = 67.7 bits (165), Expect = 6e-13
Identities = 42/193 (21%), Positives = 64/193 (33%), Gaps = 37/193 (19%)
Query: 414 GDKVRLEC-VAFGYPVPSYNWTRRGSPL-----------------PRNAYFENF--NRIL 453
G+ V L G V W + L P+ NF + L
Sbjct: 13 GESVTLPLEFPAGEKVNFITWLFNETSLAFIVPHETKSPEIHVTNPKQGKRLNFTQSYSL 72
Query: 454 TIPNVKVEDQGEYICRASNDRSALESSVTISIQAE-PNFTIPLTDKHMDNQAD-LTWTCE 511
+ N+K+ED G Y + S SA SS T+ I + N + + N L TC
Sbjct: 73 QLSNLKMEDTGSYRAQISTKTSAKLSSYTLRILRQLRNIQVTNHSQLFQNMTCELHLTCS 132
Query: 512 AF-GVPDVTYSWFRNGELLNSETLPLEDQDRYFIQDNVLTIRYLNPERDPAMYQCRAKNQ 570
+V++ W G L+S+ LT+ + Y C A+N
Sbjct: 133 VEDADDNVSFRWEALGNTLSSQ--------------PNLTVSWDPRISSEQDYTCIAENA 178
Query: 571 LKTRYSSAQLRVL 583
+ S + L
Sbjct: 179 VSNLSFSVSAQKL 191
Score = 66.2 bits (161), Expect = 2e-12
Identities = 27/146 (18%), Positives = 53/146 (36%), Gaps = 18/146 (12%)
Query: 342 DKRVFVSYDGALYFSALEQIDAGNYSCNVQSKVSDTGRNGPFFPLKVFPHSNFQQLKFPN 401
KR+ + +L S L+ D G+Y + +K S + + L++ Q+ +
Sbjct: 61 GKRLNFTQSYSLQLSNLKMEDTGSYRAQISTKTSAKLSS---YTLRILRQLRNIQVTNHS 117
Query: 402 NFPKTFPEAPKAGDKVRLEC-VAFGYPVPSYNWTRRGSPLPRNAYFENFNRILTIPNVKV 460
+ ++ L C V S+ W G+ L + + ++
Sbjct: 118 QLFQN------MTCELHLTCSVEDADDNVSFRWEALGNTLSSQ------PNLTVSWDPRI 165
Query: 461 EDQGEYICRASNDRSALESSVTISIQ 486
+ +Y C A N S S ++S Q
Sbjct: 166 SSEQDYTCIAENAVS--NLSFSVSAQ 189
Score = 52.3 bits (125), Expect = 9e-08
Identities = 28/176 (15%), Positives = 60/176 (34%), Gaps = 21/176 (11%)
Query: 211 DITLSC-YAGGYPNPSYEWFKEDYVQDRLVA--------NLIDPLSDKRFTLSG-GNLII 260
+TL + G W + +V ++ +P KR + +L +
Sbjct: 15 SVTLPLEFPAGEKVNFITWLFNETSLAFIVPHETKSPEIHVTNPKQGKRLNFTQSYSLQL 74
Query: 261 NDPRQVEDRGSYHCKASNKFGSIISESVQLAFGFIGEFNLKRAPEIGNQNWGKAMF-CDP 319
++ + +ED GSY + S K + +S + + ++ + C
Sbjct: 75 SNLK-MEDTGSYRAQISTKTSAKLSSYTLRILRQLRNIQVTNHSQLFQNMTCELHLTCSV 133
Query: 320 PTNYPGVNYYWARDYFPNFVEEDKRVFVSYDGALYFSALEQIDAGNYSCNVQSKVS 375
V++ W N + + VS+D + +Y+C ++ VS
Sbjct: 134 EDADDNVSFRWEAL--GNTLSSQPNLTVSWDPRIS-------SEQDYTCIAENAVS 180
Score = 40.0 bits (93), Expect = 0.001
Identities = 18/82 (21%), Positives = 26/82 (31%), Gaps = 21/82 (25%)
Query: 211 DITLSCYA-GGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGNL-IINDPRQVED 268
++ L+C N S+ W S NL + DPR +
Sbjct: 126 ELHLTCSVEDADDNVSFRWEA-----------------LGNTLSSQPNLTVSWDPR-ISS 167
Query: 269 RGSYHCKASNKFGSIISESVQL 290
Y C A N + +S SV
Sbjct: 168 EQDYTCIAENAVSN-LSFSVSA 188
Score = 35.7 bits (82), Expect = 0.041
Identities = 14/108 (12%), Positives = 34/108 (31%), Gaps = 13/108 (12%)
Query: 686 PPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDG------ 739
P + ++ L E ++ W N + + +E ++P I++
Sbjct: 5 PLMVNGILGESVTLPLEFPAGEKVN-FITWLFNETSLAFIVPHETKSPEIHVTNPKQGKR 63
Query: 740 ------GLLEITNASFADAGEYECVVKSTVGKISTKTTVIVEGPPGLP 781
L+++N D G Y + + + T+ +
Sbjct: 64 LNFTQSYSLQLSNLKMEDTGSYRAQISTKTSAKLSSYTLRILRQLRNI 111
>2dbj_A Proto-oncogene tyrosine-protein kinase MER precursor; C-MER,
receptor tyrosine kinase mertk, FN3 domain, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 124
Score = 67.5 bits (165), Expect = 1e-13
Identities = 21/112 (18%), Positives = 39/112 (34%), Gaps = 4/112 (3%)
Query: 867 GYGEPSSPSPQYNTPADKPYQAPSRI-GGGGGKIGDLSISWEPLPREKQNAPNIYYKIFW 925
G S T P AP + ++ I W P ++Q+ + Y+I
Sbjct: 1 GSSGSSGWILAS-TTEGAPSVAPLNVTVFLNESSDNVDIRWMKPPTKQQDGELVGYRISH 59
Query: 926 RKKNDTEFQSETLKEYGNVGIAVVRIPSEFYYTEYEVKVQAINDVGPGPESE 977
++ + + N A I + + V++ A+ G GP S+
Sbjct: 60 VWQSAGISKELLEEVGQNGSRAR--ISVQVHNATCTVRIAAVTRGGVGPFSD 109
Score = 49.4 bits (118), Expect = 2e-07
Identities = 26/121 (21%), Positives = 36/121 (29%), Gaps = 18/121 (14%)
Query: 775 EGPP-GLPGGVQVVEVH-KTSATIQWT---DGATNGRPITHYKIIARTNWNSTWFNVSEH 829
EG P P V V + I+W +G + Y+I + E
Sbjct: 15 EGAPSVAPLNVTVFLNESSDNVDIRWMKPPTKQQDGE-LVGYRISHVWQSAGISKELLEE 73
Query: 830 VIGKEVDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPSPQYNTPADKPYQAP 889
V A I V +T ++ A G G S P + PA P
Sbjct: 74 VGQNG-------SRARISV-QVHNATCTVRIAAVTRGGVGPFSDPV-KIFIPAH---SGP 121
Query: 890 S 890
S
Sbjct: 122 S 122
>2xr6_A CD209 antigen; sugar binding protein, carbohydrate binding,
mannose; HET: MAN 07B; 1.35A {Homo sapiens} PDB: 1sl4_A*
2it6_A* 1k9i_A* 2xr5_A* 1sl5_A* 2it5_A* 1xph_A 1k9j_A*
Length = 170
Score = 68.7 bits (168), Expect = 1e-13
Identities = 21/86 (24%), Positives = 34/86 (39%), Gaps = 5/86 (5%)
Query: 29 CPQHWVQYRDSCYRFVKSPLKTRNDAKLNCKSLDSDLANVNDADEHGFIMYQLFWQDPQR 88
CP W ++ +CY S + +D+ CK + + L + A+E F+ Q R
Sbjct: 22 CPWEWTFFQGNCYFMSNSQ-RNWHDSITACKEVGAQLVVIKSAEEQNFLQLQSS--RSNR 78
Query: 89 RKWYFGGT-QQSPNLWVNEDGTNLNE 113
W G + W DG+ L
Sbjct: 79 FTW-MGLSDLNQEGTWQWVDGSPLLP 103
>2k1m_A Myosin-binding protein C, cardiac-type; IG-I domain, cardiac
muscle, hypertrophic cardiomyopathy, actin-binding, cell
adhesion, disease mutation; NMR {Homo sapiens}
Length = 95
Score = 66.2 bits (162), Expect = 1e-13
Identities = 19/93 (20%), Positives = 30/93 (32%), Gaps = 10/93 (10%)
Query: 586 KPSFKKRPLESETYAGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGN--- 642
+F K+P G K W++ G+ I + + + G
Sbjct: 8 VSAFSKKP--RSVEVAAGSPAVFEAET-ERAGVKVRWQRGGSDISASNKYGLATEGTRHT 64
Query: 643 LLISPVSRDDSGIYSCTATNVHGMDESKGRLIV 675
L + V D G Y+ A G + K L V
Sbjct: 65 LTVREVGPADQGSYAVIA----GSSKVKFDLKV 93
Score = 59.7 bits (145), Expect = 3e-11
Identities = 17/75 (22%), Positives = 24/75 (32%), Gaps = 5/75 (6%)
Query: 412 KAGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYF----ENFNRILTIPNVKVEDQGEYI 467
AG E W R GS + + + E LT+ V DQG Y
Sbjct: 21 AAGSPAVFEAETER-AGVKVRWQRGGSDISASNKYGLATEGTRHTLTVREVGPADQGSYA 79
Query: 468 CRASNDRSALESSVT 482
A + + + V
Sbjct: 80 VIAGSSKVKFDLKVI 94
Score = 52.0 bits (125), Expect = 2e-08
Identities = 16/101 (15%), Positives = 29/101 (28%), Gaps = 17/101 (16%)
Query: 486 QAEPNFTIPLTDKHMDNQADLTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQ 545
+ F+ + + + E V W R G + ++Y +
Sbjct: 6 KPVSAFSKKPRSVEVAAGSPAVFEAETER-AGVKVRWQRGGS-------DISASNKYGLA 57
Query: 546 DN----VLTIRYLNPERDPAMYQCRAKNQLKTRYSSAQLRV 582
LT+R + P D Y A + L+V
Sbjct: 58 TEGTRHTLTVREVGPA-DQGSYAVIAGSSK----VKFDLKV 93
Score = 43.5 bits (103), Expect = 1e-05
Identities = 17/101 (16%), Positives = 27/101 (26%), Gaps = 18/101 (17%)
Query: 679 PSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINI- 737
S + + P + +AA V W G I + +
Sbjct: 8 VSAFSKKPRSVEVAAGSPAVFEAETERA---GVKVRWQRGGSDIS-------ASNKYGLA 57
Query: 738 -DGGL--LEITNASFADAGEYECVVKSTVGKISTKTTVIVE 775
+G L + AD G Y + G K + V
Sbjct: 58 TEGTRHTLTVREVGPADQGSYAVI----AGSSKVKFDLKVI 94
Score = 40.0 bits (94), Expect = 3e-04
Identities = 16/102 (15%), Positives = 24/102 (23%), Gaps = 18/102 (17%)
Query: 183 PDKIPRGPYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANL 242
P K P F K+P V W + +
Sbjct: 3 PGKKPV-SAFSKKPRSVEVAAGS-----PAVFEAETER-AGVKVRWQRGG--------SD 47
Query: 243 IDPLSDKRFTLSGGN--LIINDPRQVEDRGSYHCKASNKFGS 282
I + G L + + D+GSY A +
Sbjct: 48 ISASNKYGLATEGTRHTLTVREV-GPADQGSYAVIAGSSKVK 88
>2b6b_D CD209 antigen; cryo EM dengue CRD DC-SIGN, icosahedral virus,
virus-recepto; 25.00A {Homo sapiens} SCOP: d.169.1.1
Length = 175
Score = 68.7 bits (168), Expect = 2e-13
Identities = 20/86 (23%), Positives = 34/86 (39%), Gaps = 5/86 (5%)
Query: 29 CPQHWVQYRDSCYRFVKSPLKTRNDAKLNCKSLDSDLANVNDADEHGFIMYQLFWQDPQR 88
CP W ++ +CY S + +D+ CK + + L + A+E F+ Q
Sbjct: 27 CPWEWTFFQGNCYFMSNSQ-RNWHDSITACKEVGAQLVVIKSAEEQNFLQLQS---SRSN 82
Query: 89 RKWYFGGT-QQSPNLWVNEDGTNLNE 113
R + G + W DG+ L
Sbjct: 83 RFTWMGLSDLNQEGTWQWVDGSPLLP 108
>3hup_A Early activation antigen CD69; C-type lectin-like domain, disulfide
bond, glycoprotein, LEC membrane, phosphoprotein,
signal-anchor, transmembrane; 1.37A {Homo sapiens} PDB:
1e87_A 1e8i_A 3cck_A
Length = 130
Score = 67.4 bits (165), Expect = 2e-13
Identities = 16/85 (18%), Positives = 31/85 (36%), Gaps = 6/85 (7%)
Query: 28 RCPQHWVQYRDSCYRFVKSPLKTRNDAKLNCKSLDSDLANVNDADEHGFIMYQLFWQDPQ 87
C + WV Y+ CY ++ A+ C + LA ++ + F+ +
Sbjct: 15 SCSEDWVGYQRKCYFISTVK-RSWTSAQNACSEHGATLAVIDSEKDMNFLKRYA----GR 69
Query: 88 RRKWYFGGTQQSPNLWVNEDGTNLN 112
W G ++ + W +G N
Sbjct: 70 EEHW-VGLKKEPGHPWKWSNGKEFN 93
>1pd6_A Cardiac MYBP-C;, myosin-binding protein C, cardiac-type, domain C2;
IG domain, structural protein; NMR {Homo sapiens} SCOP:
b.1.1.4
Length = 104
Score = 66.2 bits (162), Expect = 2e-13
Identities = 20/106 (18%), Positives = 35/106 (33%), Gaps = 11/106 (10%)
Query: 574 RYSSAQLRVLTLKPSFKKRPLESETYAGEGGNVTIFCNPEAAPKPKFVWKKDGN-IIGSG 632
+ + + +F+K+ + +G + + A + W K+G I SG
Sbjct: 4 HHHHSSMDEKK-STAFQKKLEPAYQ-VSKGHKIRLTVE-LADHDAEVKWLKNGQEIQMSG 60
Query: 633 GRRKIFENGN---LLISPVSRDDSGIYSCTATNVHGMDESKGRLIV 675
+ G L IS S D Y C ++ L V
Sbjct: 61 SKYIFESIGAKRTLTISQCSLADDAAYQCVVGG----EKCSTELFV 102
Score = 57.4 bits (139), Expect = 3e-10
Identities = 17/85 (20%), Positives = 25/85 (29%), Gaps = 8/85 (9%)
Query: 398 KFPNNFPKTFPEAPKA--GDKVRLECVAFGYPVPSYNWTRRGSPLPRNA-----YFENFN 450
K F K A + G K+RL W + G + +
Sbjct: 13 KKSTAFQKKLEPAYQVSKGHKIRLTVELAD-HDAEVKWLKNGQEIQMSGSKYIFESIGAK 71
Query: 451 RILTIPNVKVEDQGEYICRASNDRS 475
R LTI + D Y C ++
Sbjct: 72 RTLTISQCSLADDAAYQCVVGGEKC 96
Score = 52.8 bits (127), Expect = 1e-08
Identities = 20/111 (18%), Positives = 33/111 (29%), Gaps = 19/111 (17%)
Query: 478 ESSVTISIQAEPNFTIPLTDKH--MDNQADLTWTCEAFGVPDVTYSWFRNGELLNSETLP 535
++ + F L + + T E D W +NG+ +
Sbjct: 5 HHHSSMDEKKSTAFQKKLEPAYQVSKGH-KIRLTVELAD-HDAEVKWLKNGQEIQ----- 57
Query: 536 LEDQDRYFIQDN----VLTIRYLNPERDPAMYQCRAKNQLKTRYSSAQLRV 582
+Y + LTI + D A YQC + S +L V
Sbjct: 58 -MSGSKYIFESIGAKRTLTISQCSLA-DDAAYQCVVGGEK----CSTELFV 102
Score = 49.7 bits (119), Expect = 1e-07
Identities = 21/112 (18%), Positives = 38/112 (33%), Gaps = 17/112 (15%)
Query: 668 ESKGRLIVLHGPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDL 727
+ ++ ++L P ++ ++L + +V W NG I
Sbjct: 5 HHHSSMDEKKSTAFQKKLEPAYQVSKGHKIRLTVEL-ADHDAEV--KWLKNGQEI----- 56
Query: 728 NELETPNINI--DGGL--LEITNASFADAGEYECVVKSTVGKISTKTTVIVE 775
++ G L I+ S AD Y+CV VG T + V+
Sbjct: 57 -QMSGSKYIFESIGAKRTLTISQCSLADDAAYQCV----VGGEKCSTELFVK 103
Score = 42.7 bits (101), Expect = 4e-05
Identities = 18/99 (18%), Positives = 28/99 (28%), Gaps = 17/99 (17%)
Query: 187 PRGPYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPL 246
+ F K+ +SK I L+ + +W K I
Sbjct: 13 KKSTAFQKKLEPAY-QVSKGH---KIRLTVELAD-HDAEVKWLKNG--------QEIQMS 59
Query: 247 SDKRFTLSGGN---LIINDPRQVEDRGSYHCKASNKFGS 282
K S G L I+ + D +Y C + S
Sbjct: 60 GSKYIFESIGAKRTLTISQC-SLADDAAYQCVVGGEKCS 97
>1fm5_A Early activation antigen CD69; C-type lectin-like domain, natural
killer cell receptor, lectin, C-type lectin, immune
system; 2.27A {Homo sapiens} SCOP: d.169.1.1
Length = 199
Score = 69.2 bits (169), Expect = 2e-13
Identities = 20/114 (17%), Positives = 35/114 (30%), Gaps = 14/114 (12%)
Query: 3 LISSCLFIFVSFHSVFSQTIDELELRCPQHWVQYRDSCYRFVKSPLKTRNDAKLNCKSLD 62
+ S FS D C + WV Y+ CY ++ A+ C
Sbjct: 59 IALSVGQYNCPGQYTFSMPSDSHVSSCSEDWVGYQRKCYFISTVK-RSWTSAQNACSEHG 117
Query: 63 SDLANVNDADEHGFIMYQL----FWQDPQRRKWYFGGTQQSPNLWVNEDGTNLN 112
+ LA ++ + F+ W G ++ + W +G N
Sbjct: 118 ATLAVIDSEKDMNFLKRYAGREEHW---------VGLKKEPGHPWKWSNGKEFN 162
>2dru_A Chimera of CD48 antigen and T-cell surface antige; CD2 binding
domain of CD48, immune system; HET: NAG; 2.60A {Rattus
norvegicus}
Length = 180
Score = 68.8 bits (168), Expect = 2e-13
Identities = 31/189 (16%), Positives = 50/189 (26%), Gaps = 42/189 (22%)
Query: 602 EGGNVTIFCNPEAAPKPKFV------------WKKDGNIIGSGGRRK-----IFENGNLL 644
G NVT+ + + + +G K NG L
Sbjct: 13 TGSNVTLTILKHPLASYQRLTWLHTTNQKILEYFPNGKKTVFESVFKDRVDLDKTNGALR 72
Query: 645 ISPVSRDDSGIYSCTATNVHGMDESKGRLIVLHGPSYYEQLP-PKITIAAHRNLQLRCSA 703
I VS++D G Y + D+ K + V YE + P I N L C
Sbjct: 73 IYNVSKEDRGDYYMRMLH-ETEDQWKITMEV------YEMVSKPMIYWEC-SNATLTCEV 124
Query: 704 HTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEITNASFADAGEYECVVKSTV 763
DV + + ++ ++C + V
Sbjct: 125 LEGT--DVELKLYQGKEHLRS--------------LRQKTMSYQWTNLRAPFKCKAVNRV 168
Query: 764 GKISTKTTV 772
+ S V
Sbjct: 169 SQESEMEVV 177
Score = 64.5 bits (157), Expect = 6e-12
Identities = 27/128 (21%), Positives = 45/128 (35%), Gaps = 27/128 (21%)
Query: 445 YFENFNRILTIPNVKVEDQGEYICRASNDRSALESSVTISIQA---EPNFTIPLTDKHMD 501
+ N L I NV ED+G+Y R ++ + +T+ + +P
Sbjct: 63 DLDKTNGALRIYNVSKEDRGDYYMRMLHETED-QWKITMEVYEMVSKPMIYW-------- 113
Query: 502 NQADLTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQDNVLTIRYLNPERDPA 561
++ T TCE DV ++ E L S T+ Y A
Sbjct: 114 ECSNATLTCEVLEGTDVELKLYQGKEHLRS--------------LRQKTMSY-QWTNLRA 158
Query: 562 MYQCRAKN 569
++C+A N
Sbjct: 159 PFKCKAVN 166
Score = 58.7 bits (142), Expect = 5e-10
Identities = 18/139 (12%), Positives = 36/139 (25%), Gaps = 24/139 (17%)
Query: 346 FVSYDGALYFSALEQIDAGNYSCNVQSKVSDTGRNGPFFPLKVFPHSNFQQLKFPNNFPK 405
+GAL + + D G+Y + + D + ++V+
Sbjct: 64 LDKTNGALRIYNVSKEDRGDYYMRMLHETEDQWK----ITMEVYE-------------MV 106
Query: 406 TFPEAPKAGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYFENFNRILTIPNVKVEDQGE 465
+ P L C + L R T+ +
Sbjct: 107 SKPMIYWECSNATLTCEVLEGTDVELKLYQGKEHLRSL-------RQKTMSYQWTNLRAP 159
Query: 466 YICRASNDRSALESSVTIS 484
+ C+A N S ++
Sbjct: 160 FKCKAVNRVSQESEMEVVN 178
Score = 39.9 bits (93), Expect = 0.001
Identities = 11/77 (14%), Positives = 21/77 (27%), Gaps = 18/77 (23%)
Query: 212 ITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVEDRGS 271
TL+C + + ++ K S ++ + R
Sbjct: 118 ATLTCEVLEGTDVELKLYQ-----------------GKEHLRSLRQKTMS-YQWTNLRAP 159
Query: 272 YHCKASNKFGSIISESV 288
+ CKA N+ V
Sbjct: 160 FKCKAVNRVSQESEMEV 176
Score = 36.4 bits (84), Expect = 0.018
Identities = 21/173 (12%), Positives = 48/173 (27%), Gaps = 27/173 (15%)
Query: 211 DITLSC-YAGGYPNPSYEWFKED------YVQDRLVANLIDPLSDK-RFTLSGGNLIIND 262
++TL+ W Y + D+ + G L I +
Sbjct: 16 NVTLTILKHPLASYQRLTWLHTTNQKILEYFPNGKKTVFESVFKDRVDLDKTNGALRIYN 75
Query: 263 PRQVEDRGSYHCKASNKFGSIISESVQLAFGFIGEFNLKRAPEIGNQNWGKAMFCDPPTN 322
+ EDRG Y+ + ++ ++++ + + P I + + C+
Sbjct: 76 VSK-EDRGDYYMRMLHETEDQWKITMEV-------YEMVSKPMIYWECSNATLTCEVL-E 126
Query: 323 YPGVNYYWARDYFPNFVEEDKRVFVSYDGALYFSALEQIDAGNYSCNVQSKVS 375
V + + + S + C ++VS
Sbjct: 127 GTDVELKLYQG----------KEHLRSLRQKTMSYQWTNLRAPFKCKAVNRVS 169
>3rs1_A C-type lectin domain family 2 member I; C-type lectin-like, ligand
of NK receptor, natural killer CE receptors, surface of
activated T lymphocytes; 1.94A {Mus musculus}
Length = 122
Score = 67.0 bits (164), Expect = 2e-13
Identities = 17/91 (18%), Positives = 34/91 (37%), Gaps = 15/91 (16%)
Query: 29 CPQHWVQYRDSCYRFVKSPLKTRNDAKLNCKSLDSDLANVNDADEHGFIMYQL----FWQ 84
C ++W + C+ F P + A+ C + ++ LA ++ +E F+ W
Sbjct: 8 CSKNWTGVGNKCFYFSGYP-RNWTFAQAFCMAQEAQLARFDNEEELIFLKRFKGDFDSW- 65
Query: 85 DPQRRKWYFGGT-QQSPNLWVNEDGTNLNEL 114
G + S + W + T N +
Sbjct: 66 --------IGLHRESSEHPWKWTNNTEYNNM 88
>2bpd_A Dectin-1; receptor, beta-glucan, fungal recognition, C-type
lectin-like domain, CTLD, carbohydrate; 1.5A {Mus
musculus} PDB: 2bph_A 2bpe_A 2cl8_A*
Length = 142
Score = 67.1 bits (164), Expect = 2e-13
Identities = 19/87 (21%), Positives = 36/87 (41%), Gaps = 8/87 (9%)
Query: 29 CPQHWVQYRDSCYRFVKSPLKTRNDAKLNCKSLDSDLANVNDADEHGFIMYQLFWQDPQR 88
C +W+ + SCY F S + +K +C L + L ++++ E FI Q +
Sbjct: 17 CLPNWIMHGKSCYLFSFSG-NSWYGSKRHCSQLGAHLLKIDNSKEFEFIESQT--SSHRI 73
Query: 89 RKWYFGGTQQSPN---LWVNEDGTNLN 112
++ G ++ W DG+
Sbjct: 74 NAFWIGLSRNQSEGPWFWE--DGSAFF 98
>1qr4_A Protein (tenascin); fibronectin type-III, heparin, extracellular
matrix, adhesion, fusion protein, structural protein;
2.55A {Gallus gallus} SCOP: b.1.2.1 b.1.2.1
Length = 186
Score = 68.2 bits (167), Expect = 3e-13
Identities = 22/204 (10%), Positives = 58/204 (28%), Gaps = 33/204 (16%)
Query: 777 PPGLPGGVQVVEVHKTSATIQWTDGATNGRPITHYKIIARTNWNSTWFNVSEHVIGKEVD 836
P ++V + +T+ +++W Y++ + + E++
Sbjct: 6 DLDNPKDLEVSDPTETTLSLRWR--RPVA-KFDRYRLTYVSP-SGKK---------NEME 52
Query: 837 RYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPSPQYNTPADKPYQAPSRIGGGG 896
+ L + Y ++A +P++ T +P I
Sbjct: 53 IPVDSTSFILRG-LDAGTEYTISLVAEKGRHKSKPTTIKGS--TVVG----SPKGISFSD 105
Query: 897 GKIGDLSISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETLKEYGNVGIAVVR--IPSE 954
++SW P + Y++ + T+ G+ + +P
Sbjct: 106 ITENSATVSWTPPR-----SRVDSYRVSYVPITGGTPNVVTVD--GSKTRTKLVKLVP-- 156
Query: 955 FYYTEYEVKVQAINDVGPGPESEV 978
+Y V + ++
Sbjct: 157 --GVDYNVNIISVKGFEESEPISG 178
Score = 57.8 bits (140), Expect = 1e-09
Identities = 24/123 (19%), Positives = 39/123 (31%), Gaps = 14/123 (11%)
Query: 754 EYECVVKS-TVGKISTKTTVIVEGPPGLPGGVQVVEVHKTSATIQWTDGATNGRPITHYK 812
EY + + S TT+ G P G+ ++ + SAT+ WT + Y+
Sbjct: 70 EYTISLVAEKGRHKSKPTTIKGSTVVGSPKGISFSDITENSATVSWT--PPRS-RVDSYR 126
Query: 813 IIARTNWNSTWFNVSEHVIGKEVDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPS 872
+ T V + + LVP Y +I+ EP
Sbjct: 127 VSYVPITGGTP---------NVVTVDGSKTRTKLVK-LVPGVDYNVNIISVKGFEESEPI 176
Query: 873 SPS 875
S
Sbjct: 177 SGI 179
>1v5j_A KIAA1355 protein, RSGI RUH-008; FN3 domain, human cDNA, structural
genomics, riken structural genomics/proteomics
initiative, cell adhesion; NMR {Homo sapiens} SCOP:
b.1.2.1
Length = 108
Score = 65.7 bits (160), Expect = 4e-13
Identities = 18/110 (16%), Positives = 33/110 (30%), Gaps = 9/110 (8%)
Query: 776 GPPGLPGGVQVVEVHKTSATIQWTDGATNGRPITHYKIIARTNWNSTWFNVSEHVIGKEV 835
P V + W + + Y + R + W + V G E
Sbjct: 5 SSGLSPPRGLVAVRTPRGVLLHWDPPELVPKRLDGYVLEGRQG-SQGWEVLDPAVAGTE- 62
Query: 836 DRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPSPQYNTPADKP 885
E + L+ YEF+++A +PS+ + + P
Sbjct: 63 ------TELLVPG-LIKDVLYEFRLVAFAGSFVSDPSNTANVSTSGLSGP 105
Score = 32.6 bits (74), Expect = 0.16
Identities = 12/75 (16%), Positives = 21/75 (28%), Gaps = 5/75 (6%)
Query: 904 ISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETLKEYGNVGIAVVRIPSEFYYTEYEVK 963
+ W+P E Y + R+ + E L + +P YE +
Sbjct: 25 LHWDP--PELVPKRLDGYVLEGRQGSQ---GWEVLDPAVAGTETELLVPGLIKDVLYEFR 79
Query: 964 VQAINDVGPGPESEV 978
+ A S
Sbjct: 80 LVAFAGSFVSDPSNT 94
>2cpc_A KIAA0657 protein; immunoglobulin domain, IG domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 113
Score = 65.9 bits (161), Expect = 4e-13
Identities = 22/85 (25%), Positives = 38/85 (44%), Gaps = 9/85 (10%)
Query: 414 GDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYF----ENFNRILTIPNVKVEDQGEYICR 469
++V L C P WT+ G + + E+ R L +P V++ED GEY+C
Sbjct: 28 LERVVLTCEL-CRPWAEVRWTKDGEEVVESPALLLQKEDTVRRLVLPAVQLEDSGEYLCE 86
Query: 470 ASNDRSALESSVTISIQAEPNFTIP 494
++ +S T+++ P I
Sbjct: 87 IDDES----ASFTVTVTEPPVRIIY 107
Score = 64.4 bits (157), Expect = 1e-12
Identities = 21/111 (18%), Positives = 36/111 (32%), Gaps = 16/111 (14%)
Query: 584 TLKPSFKKRPLE-SETYAGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGN 642
T S+ P A V + C P + W KDG + + +
Sbjct: 8 TDVSSWIVYPSGKVYVAAVRLERVVLTCEL-CRPWAEVRWTKDGEEVVESPALLLQKEDT 66
Query: 643 ---LLISPVSRDDSGIYSCTATNVHGMDESKGRLIVLHGPSYYEQLPPKIT 690
L++ V +DSG Y C + + + + V + P +I
Sbjct: 67 VRRLVLPAVQLEDSGEYLCEIDD----ESASFTVTV-------TEPPVRII 106
Score = 48.2 bits (115), Expect = 6e-07
Identities = 20/94 (21%), Positives = 33/94 (35%), Gaps = 18/94 (19%)
Query: 689 ITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINI--DGGL--LEI 744
+ + L C +V WT +G + E+P + + + + L +
Sbjct: 23 VAAVRLERVVLTCEL-CRPWAEV--RWTKDGEEVV-------ESPALLLQKEDTVRRLVL 72
Query: 745 TNASFADAGEYECVVKSTVGKISTKTTVIVEGPP 778
D+GEY C + S TV V PP
Sbjct: 73 PAVQLEDSGEYLCE----IDDESASFTVTVTEPP 102
Score = 47.4 bits (113), Expect = 1e-06
Identities = 19/122 (15%), Positives = 34/122 (27%), Gaps = 18/122 (14%)
Query: 479 SSVTISIQAEPNFTIPLTDKHMDNQADLTWTCEAFGVPDVTYSWFRNGELLNSETLPLED 538
SS T + + + + TCE P W ++GE + +
Sbjct: 5 SSGT-DVSSWIVYPSGKVYVAAVRLERVVLTCEL-CRPWAEVRWTKDGE-------EVVE 55
Query: 539 QDRYFIQDN----VLTIRYLNPERDPAMYQCRAKNQLKTRYSSAQLRVLTLKPSFKKRPL 594
+Q L + + E D Y C ++ +S + V
Sbjct: 56 SPALLLQKEDTVRRLVLPAVQLE-DSGEYLCEIDDES----ASFTVTVTEPPVRIIYSGP 110
Query: 595 ES 596
S
Sbjct: 111 SS 112
Score = 41.7 bits (98), Expect = 1e-04
Identities = 15/93 (16%), Positives = 29/93 (31%), Gaps = 16/93 (17%)
Query: 196 PTDVVFDLSKRSIL----NDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRF 251
+ +V+ K + + L+C P W K+ +
Sbjct: 11 SSWIVYPSGKVYVAAVRLERVVLTCELCR-PWAEVRWTKDG--------EEVVESPALLL 61
Query: 252 TLSGGN--LIINDPRQVEDRGSYHCKASNKFGS 282
L++ Q+ED G Y C+ ++ S
Sbjct: 62 QKEDTVRRLVLPAV-QLEDSGEYLCEIDDESAS 93
>2pet_A Lutheran blood group glycoprotein; immunoglobulin superfamily.,
cell adhesion; 1.70A {Homo sapiens} PDB: 2pf6_A
Length = 231
Score = 69.1 bits (168), Expect = 4e-13
Identities = 37/215 (17%), Positives = 65/215 (30%), Gaps = 46/215 (21%)
Query: 413 AGDKVRLECVAFGYP-VPSYNWTRRGSPLPRNAYFENFNRI------------------- 452
G V L+C G W R +
Sbjct: 14 RGKSVILDCTPTGTHDHYMLEWFLTDRSGARPRLASAEMQGSELQVTMHDTRGRSPPYQL 73
Query: 453 -----LTIPNVKVEDQGEYICRASNDRSAL-ESSVTISIQAEPNFTI----PLTDKHMDN 502
L + +V D+ +Y+C + E++ +++ A+P T T M++
Sbjct: 74 DSQGRLVLAEAQVGDERDYVCVVRAGAAGTAEATARLNVFAKPEATEVSPNKGTLSVMED 133
Query: 503 QADLTWTCEAF-GVPDVTYSWFRNGELLNS----------ETLPLEDQDRYFIQDNVLTI 551
A TC + G P +W+RNG+ L + + + + L +
Sbjct: 134 SAQEIATCNSRNGNPAPKITWYRNGQRLEVPVEMNPEGYMTSRTVREASGLLSLTSTLYL 193
Query: 552 RYLNPERDPAMYQCRAKNQL----KTRYSSAQLRV 582
R L + A + C A L R S +
Sbjct: 194 R-LRKDDRDASFHCAAHYSLPEGRHGRLDSPTFHL 227
Score = 52.9 bits (126), Expect = 1e-07
Identities = 24/193 (12%), Positives = 48/193 (24%), Gaps = 37/193 (19%)
Query: 318 DPPTNYPGVNYYWARDYFPNFVEEDKRVFVSYDGALYFSALEQIDAGNYSCNVQSKVSDT 377
+ + V + R P + G L + + D +Y C V++ + T
Sbjct: 51 EMQGSELQVTMHDTRGRSP-------PYQLDSQGRLVLAEAQVGDERDYVCVVRAGAAGT 103
Query: 378 GRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPEAPKAGDKVRLECVAF-GYPVPSYNWTRR 436
+ P + + N + + C + G P P W R
Sbjct: 104 AEATARLNVFAKP----EATEVSPNKGTLSVM--EDSAQEIATCNSRNGNPAPKITWYRN 157
Query: 437 GSPLPRNAYFENFNRI-----------------LTIPNVKVEDQGEYICRASN------D 473
G L + L + K + + C A
Sbjct: 158 GQRLEVPVEMNPEGYMTSRTVREASGLLSLTSTLYLRLRKDDRDASFHCAAHYSLPEGRH 217
Query: 474 RSALESSVTISIQ 486
+ +++
Sbjct: 218 GRLDSPTFHLTLH 230
Score = 51.7 bits (123), Expect = 3e-07
Identities = 26/205 (12%), Positives = 47/205 (22%), Gaps = 49/205 (23%)
Query: 602 EGGNVTIFCNPEAAPKPKFV-WKKDG-----------------------NIIGSGGRRKI 637
G +V + C P + W + G ++
Sbjct: 14 RGKSVILDCTPTGTHDHYMLEWFLTDRSGARPRLASAEMQGSELQVTMHDTRGRSPPYQL 73
Query: 638 FENGNLLISPVSRDDSGIYSCTA-TNVHGMDESKGRLIVLHGPSY---YEQLPPKITIAA 693
G L+++ D Y C G E+ RL V P +
Sbjct: 74 DSQGRLVLAEAQVGDERDYVCVVRAGAAGTAEATARLNVFAKPEATEVSPNKGTLSVMED 133
Query: 694 HRNLQLRCSAHTEELLDVAY-----IWTHNGVRIGN----MDLNELETPNINIDGGL--- 741
C++ W NG R+ + + + GL
Sbjct: 134 SAQEIATCNSRN------GNPAPKITWYRNGQRLEVPVEMNPEGYMTSRTVREASGLLSL 187
Query: 742 ---LEITNASFADAGEYECVVKSTV 763
L + + C ++
Sbjct: 188 TSTLYLRLRKDDRDASFHCAAHYSL 212
Score = 40.6 bits (94), Expect = 0.001
Identities = 25/144 (17%), Positives = 48/144 (33%), Gaps = 20/144 (13%)
Query: 684 QLPPKITIAAHRNLQLRCSA-HTEELLDVAYIWTHNGVRIGNMDLNELETPNINI----- 737
+PP + + +++ L C+ T + + + T + E++ + +
Sbjct: 5 SVPPLVEVMRGKSVILDCTPTGTHDHYMLEWFLTDRSGARPRLASAEMQGSELQVTMHDT 64
Query: 738 ----------DGGLLEITNASFADAGEYECVVKST-VGKISTKTTVIVEGPPGLP---GG 783
G L + A D +Y CVV++ G + V P
Sbjct: 65 RGRSPPYQLDSQGRLVLAEAQVGDERDYVCVVRAGAAGTAEATARLNVFAKPEATEVSPN 124
Query: 784 VQVVEVHKTSATIQWTDGATNGRP 807
+ V + SA T + NG P
Sbjct: 125 KGTLSVMEDSAQEIATCNSRNGNP 148
Score = 38.2 bits (88), Expect = 0.008
Identities = 15/95 (15%), Positives = 33/95 (34%), Gaps = 16/95 (16%)
Query: 210 NDITLSCYA-GGYPNPSYEWFKE--------DYVQDRLVANLIDPLSDKRFTLSGGNLII 260
+C + G P P W++ + + + + + +L+ L +
Sbjct: 135 AQEIATCNSRNGNPAPKITWYRNGQRLEVPVEMNPEGYMTSRTVREASGLLSLT-STLYL 193
Query: 261 NDPRQVEDRGSYHCKAS-----NKFGSIISESVQL 290
R+ + S+HC A + G + S + L
Sbjct: 194 R-LRKDDRDASFHCAAHYSLPEGRHGRLDSPTFHL 227
Score = 35.6 bits (81), Expect = 0.053
Identities = 24/142 (16%), Positives = 40/142 (28%), Gaps = 20/142 (14%)
Query: 211 DITLSC-YAGGYPNPSYEWFKED--------YVQDRLVANLIDPLSDKRF------TLSG 255
+ L C G + + EWF D + + L + D R S
Sbjct: 17 SVILDCTPTGTHDHYMLEWFLTDRSGARPRLASAEMQGSELQVTMHDTRGRSPPYQLDSQ 76
Query: 256 GNLIINDPRQVEDRGSYHCKASNKFGSIISESVQL----AFGFIGEFNLKRAPEIGNQNW 311
G L++ + QV D Y C + +L K + +
Sbjct: 77 GRLVLAEA-QVGDERDYVCVVRAGAAGTAEATARLNVFAKPEATEVSPNKGTLSVMEDSA 135
Query: 312 GKAMFCDPPTNYPGVNYYWARD 333
+ C+ P W R+
Sbjct: 136 QEIATCNSRNGNPAPKITWYRN 157
>1va9_A DOWN syndrome cell adhesion molecule like- protein 1B; FNIII
domain, dscaml1 protein, structural genomics; NMR {Homo
sapiens} SCOP: b.1.2.1
Length = 122
Score = 66.2 bits (162), Expect = 4e-13
Identities = 26/107 (24%), Positives = 43/107 (40%), Gaps = 1/107 (0%)
Query: 872 SSPSPQYNTPADKPYQAPSRIGGGGGKIGDLSISWEPLPREKQNAPNIYYKIFWRKKNDT 931
SS S +T P P + + ++W+ +E QN Y+I +R+ +
Sbjct: 2 SSGSSGISTEEAAPDGPPMDVTLQPVTSQSIQVTWKAPKKELQNGVIRGYQIGYRENSPG 61
Query: 932 EFQSETLKEYGNVG-IAVVRIPSEFYYTEYEVKVQAINDVGPGPESE 977
++ E G V + + + +Y V VQA N G GP S
Sbjct: 62 SNGQYSIVEMKATGDSEVYTLDNLKKFAQYGVVVQAFNRAGTGPSSS 108
Score = 49.7 bits (119), Expect = 2e-07
Identities = 26/101 (25%), Positives = 37/101 (36%), Gaps = 9/101 (8%)
Query: 777 PPGLPGGVQVVEVHKTSATIQWT---DGATNGRPITHYKIIARTNWNSTWFNVSEHVIGK 833
P G P V + V S + W NG I Y+I R N + S
Sbjct: 15 PDGPPMDVTLQPVTSQSIQVTWKAPKKELQNGV-IRGYQIGYRENSPGSNGQYSI----V 69
Query: 834 EVDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSP 874
E+ + +++N L ++ Y V A N G G SS
Sbjct: 70 EMKATGDSEVYTLDN-LKKFAQYGVVVQAFNRAGTGPSSSE 109
>2eny_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 104
Score = 65.5 bits (160), Expect = 4e-13
Identities = 19/93 (20%), Positives = 31/93 (33%), Gaps = 10/93 (10%)
Query: 587 PSFKKRPLESETYAGEGGNVTIFCN-PEAAPKPKFVWKKDGNIIGSGGRRKIFENGN--- 642
KR EG + + C + +W G +GS R + G
Sbjct: 9 VGITKRL--KTMEVLEGESCSFECVLSHESASDPAMWTVGGKTVGSSSRFQATRQGRKYI 66
Query: 643 LLISPVSRDDSGIYSCTATNVHGMDESKGRLIV 675
L++ + D+G + + SK LIV
Sbjct: 67 LVVREAAPSDAGEVVFSVRGL----TSKASLIV 95
Score = 61.6 bits (150), Expect = 9e-12
Identities = 13/83 (15%), Positives = 26/83 (31%), Gaps = 9/83 (10%)
Query: 412 KAGDKVRLEC-VAFGYPVPSYNWTRRGSPLPRNAYF----ENFNRILTIPNVKVEDQGEY 466
G+ EC ++ WT G + ++ F + IL + D GE
Sbjct: 21 LEGESCSFECVLSHESASDPAMWTVGGKTVGSSSRFQATRQGRKYILVVREAAPSDAGEV 80
Query: 467 ICRASNDRSALESSVTISIQAEP 489
+ S ++ ++
Sbjct: 81 VFSVRGLT----SKASLIVRERS 99
Score = 50.1 bits (120), Expect = 1e-07
Identities = 14/101 (13%), Positives = 24/101 (23%), Gaps = 17/101 (16%)
Query: 487 AEPNFTIPLTDKHMDNQADLTWTCE-AFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQ 545
T L + ++ C + W G+ + R+
Sbjct: 7 GHVGITKRLKTMEVLEGESCSFECVLSHESASDPAMWTVGGK-------TVGSSSRFQAT 59
Query: 546 DN----VLTIRYLNPERDPAMYQCRAKNQLKTRYSSAQLRV 582
+L +R P D + S A L V
Sbjct: 60 RQGRKYILVVREAAPS-DAGEVVFSVRGLT----SKASLIV 95
Score = 49.3 bits (118), Expect = 2e-07
Identities = 19/99 (19%), Positives = 34/99 (34%), Gaps = 16/99 (16%)
Query: 689 ITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINI--DGGL--LEI 744
+ + + C + E +WT G +G + G L +
Sbjct: 18 MEVLEGESCSFECVL-SHESASDPAMWTVGGKTVG-------SSSRFQATRQGRKYILVV 69
Query: 745 TNASFADAGEYECVVKSTVGKISTKTTVIVEGPPGLPGG 783
A+ +DAGE V +++K ++IV G G
Sbjct: 70 REAAPSDAGEVVFS----VRGLTSKASLIVRERSGPSSG 104
Score = 39.3 bits (92), Expect = 6e-04
Identities = 9/99 (9%), Positives = 20/99 (20%), Gaps = 17/99 (17%)
Query: 187 PRGPYFIKQPTDVVFDLSKRSILNDITLSCY-AGGYPNPSYEWFKEDYVQDRLVANLIDP 245
K+ + + + C + + W +
Sbjct: 6 SGHVGITKRLKTMEVLEGE-----SCSFECVLSHESASDPAMWTVGG--------KTVGS 52
Query: 246 LSDKRFTLSGGN--LIINDPRQVEDRGSYHCKASNKFGS 282
S + T G L++ + D G
Sbjct: 53 SSRFQATRQGRKYILVVREA-APSDAGEVVFSVRGLTSK 90
Score = 29.7 bits (67), Expect = 1.4
Identities = 12/67 (17%), Positives = 15/67 (22%), Gaps = 6/67 (8%)
Query: 313 KAMF-CDPPTNYPGVNYYWARDYFPNFVEEDKRVFVSYDGA---LYFSALEQIDAGNYSC 368
F C W V R + G L DAG
Sbjct: 25 SCSFECVLSHESASDPAMWTVGGKT--VGSSSRFQATRQGRKYILVVREAAPSDAGEVVF 82
Query: 369 NVQSKVS 375
+V+ S
Sbjct: 83 SVRGLTS 89
>2zib_A Type II antifreeze protein; thermal hysteresis, lectin; 1.34A
{Brachyopsis rostratus}
Length = 133
Score = 66.2 bits (162), Expect = 4e-13
Identities = 20/90 (22%), Positives = 37/90 (41%), Gaps = 14/90 (15%)
Query: 27 LRCPQHWVQYRDSCYRFVKSPLKTRNDAKLNCKSLDSDLANVNDADEHGFI---MYQLFW 83
L CP W + C+ + T + A+ NC + LA+++ +E +I + + W
Sbjct: 8 LVCPAGWTLHGQRCFYSEATA-MTWDLAEANCVNKGGHLASIHSLEEQLYIKDIVAGIVW 66
Query: 84 QDPQRRKWYFGGT-QQSPNLWVNEDGTNLN 112
GG+ + W DGT ++
Sbjct: 67 ---------IGGSACKVAGAWSWTDGTPVD 87
>2py2_A Antifreeze protein type II; type II antifreeze protein; 1.70A
{Clupea harengus}
Length = 136
Score = 66.6 bits (163), Expect = 4e-13
Identities = 19/85 (22%), Positives = 34/85 (40%), Gaps = 5/85 (5%)
Query: 29 CPQHWVQYRDSCYRFVKSPLKTRNDAKLNCKSLDSDLANVNDADEHGFIMYQLFWQDPQR 88
CP W + C+ F DA+ +C ++LA+++ +E F+
Sbjct: 4 CPTDWKMFNGRCFLFNPLQ-LHWADAQESCMKEGANLASIHSLEESTFVKELT---SADL 59
Query: 89 RKWYFGGT-QQSPNLWVNEDGTNLN 112
+ GGT Q W D T+++
Sbjct: 60 IPSWIGGTDCQVSTRWFWMDSTSMD 84
>3sbw_C Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-H1, programmed
death-1 ligand 1, complex, costimulatory, immune system;
2.28A {Homo sapiens} PDB: 3fn3_A 3bis_A 3bik_A
Length = 222
Score = 68.5 bits (167), Expect = 5e-13
Identities = 32/199 (16%), Positives = 60/199 (30%), Gaps = 35/199 (17%)
Query: 414 GDKVRLECVAFGYPVPS---YNWTRR-----------GSPLPRNAYFENFNRI------- 452
G + +EC G + + R
Sbjct: 16 GSNMTIECKFPVEKQLDLAALIVYWEMEDKNIIQFVHGEEDLKVQHSSYRQRARLLKDQL 75
Query: 453 ------LTIPNVKVEDQGEYICRASNDRSALESSVTISIQAEPNFTIPLTDKHMDNQADL 506
L I +VK++D G Y C S A +T+ + A N ++
Sbjct: 76 SLGNAALQITDVKLQDAGVYRCMISYG-GADYKRITVKVNAPYNKINQRILVVDPVTSEH 134
Query: 507 TWTCEAFGVPDVTYSWFRN-GELLNS--ETLPLEDQDRYFIQDNVLTIRYLNPERDPAMY 563
TC+A G P W + ++L+ T + +++ F + L I ++
Sbjct: 135 ELTCQAEGYPKAEVIWTSSDHQVLSGKTTTTNSKREEKLFNVTSTLRIN----TTTNEIF 190
Query: 564 QCRAKNQLKTRYSSAQLRV 582
C + +A+L +
Sbjct: 191 YCTFRRLDPEENHTAELVI 209
Score = 67.7 bits (165), Expect = 1e-12
Identities = 26/181 (14%), Positives = 48/181 (26%), Gaps = 26/181 (14%)
Query: 328 YYWARDYFPNFVEEDK-RVFVSYDG------ALYFSALEQIDAGNYSCNVQSKVSDTGRN 380
+ + + R + D AL + ++ DAG Y C + +D R
Sbjct: 50 FVHGEEDLKVQHSSYRQRARLLKDQLSLGNAALQITDVKLQDAGVYRCMISYGGADYKR- 108
Query: 381 GPFFPLKVFPHSNFQQLKFPNNFPKTFPEAPKAGDKVRLECVAFGYPVPSYNWTRRGSPL 440
+KV + + P + L C A GYP WT +
Sbjct: 109 ---ITVKV-------NAPYNKINQRILVVDPV-TSEHELTCQAEGYPKAEVIWTSSDHQV 157
Query: 441 PRNAYFENFNR-------ILTIPNVKVEDQGEYICRASNDRSALESSVTISIQAEPNFTI 493
++ + + + + C + + I P
Sbjct: 158 LSGKTTTTNSKREEKLFNVTSTLRINTTTNEIFYCTFRRLDPEENHTAELVIPELPLAHP 217
Query: 494 P 494
P
Sbjct: 218 P 218
Score = 63.1 bits (153), Expect = 3e-11
Identities = 22/148 (14%), Positives = 45/148 (30%), Gaps = 13/148 (8%)
Query: 549 LTIRYLNPERDPAMYQCRAKNQLKTRYSSAQLRVLTLKPSFKKRPLESETYAGEGGNVTI 608
L I + + D +Y+C Y ++V + K +
Sbjct: 82 LQITDVKLQ-DAGVYRCMISYG-GADYKRITVKV---NAPYNKINQRILVVDPVTSEHEL 136
Query: 609 FCNPEAAPKPKFVWKK-DGNIIGSGGRRKIFENGNLLIS-----PVSRDDSGIYSCTATN 662
C E PK + +W D ++ + L + ++ + I+ CT
Sbjct: 137 TCQAEGYPKAEVIWTSSDHQVLSGKTTTTNSKREEKLFNVTSTLRINTTTNEIFYCTFRR 196
Query: 663 VHGMDESKGRLIVLHGPSYYEQLPPKIT 690
+ + L++ P P + T
Sbjct: 197 LDPEENHTAELVIPELPL--AHPPNERT 222
Score = 59.2 bits (143), Expect = 6e-10
Identities = 33/208 (15%), Positives = 62/208 (29%), Gaps = 36/208 (17%)
Query: 600 AGEGGNVTIFC----NPEAAPKP-KFVWKKDGNIIGS---------------GGRRKIFE 639
G N+TI C + W+ + I R ++ +
Sbjct: 13 VEYGSNMTIECKFPVEKQLDLAALIVYWEMEDKNIIQFVHGEEDLKVQHSSYRQRARLLK 72
Query: 640 ------NGNLLISPVSRDDSGIYSCTATNVHGMDESKGRLIVLHGPSYYEQLPPKITIAA 693
N L I+ V D+G+Y C + G D + + V P +
Sbjct: 73 DQLSLGNAALQITDVKLQDAGVYRCMISY-GGADYKRITVKVNA-PYNKINQRILVVDPV 130
Query: 694 HRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEIT---NASFA 750
+L C A +V IWT + + + T N + L +T +
Sbjct: 131 TSEHELTCQAEGYPKAEV--IWTSSD---HQVLSGKTTTTNSKREEKLFNVTSTLRINTT 185
Query: 751 DAGEYECVVKSTVGKISTKTTVIVEGPP 778
+ C + + + +++ P
Sbjct: 186 TNEIFYCTFRRLDPEENHTAELVIPELP 213
Score = 45.4 bits (107), Expect = 3e-05
Identities = 14/81 (17%), Positives = 25/81 (30%), Gaps = 8/81 (9%)
Query: 210 NDITLSCYAGGYPNPSYEWFKED--YVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVE 267
++ L+C A GYP W D + + +K F ++ L IN
Sbjct: 132 SEHELTCQAEGYPKAEVIWTSSDHQVLSGKTTTTNSKR-EEKLFNVT-STLRINT----T 185
Query: 268 DRGSYHCKASNKFGSIISESV 288
++C +
Sbjct: 186 TNEIFYCTFRRLDPEENHTAE 206
Score = 44.6 bits (105), Expect = 5e-05
Identities = 28/185 (15%), Positives = 48/185 (25%), Gaps = 25/185 (13%)
Query: 211 DITLSCYAGGYPNPSY-----EWFKED-----YVQDRLVANLIDPLSDKRFTLSG----- 255
++T+ C W ED +V + +R L
Sbjct: 18 NMTIECKFPVEKQLDLAALIVYWEMEDKNIIQFVHGEEDLKVQHSSYRQRARLLKDQLSL 77
Query: 256 GN--LIINDPRQVEDRGSYHCKASNKFGSIISESVQLAFGFIGEFNLKRAPEIGNQNWGK 313
GN L I D +++D G Y C S G + + + +R +
Sbjct: 78 GNAALQITDV-KLQDAGVYRCMISY--GGADYKRITVKVNAPYNKINQRILVVDPVTSEH 134
Query: 314 AMFCDPPTNYPGVNYYWARDYFPNFVEEDKRVFVSYDGALY--FSAL--EQIDAGNYSCN 369
+ C YP W + + L+ S L + C
Sbjct: 135 ELTCQ-AEGYPKAEVIWTSSDHQVLSGKTTTTNSKREEKLFNVTSTLRINTTTNEIFYCT 193
Query: 370 VQSKV 374
+
Sbjct: 194 FRRLD 198
Score = 41.1 bits (96), Expect = 7e-04
Identities = 33/178 (18%), Positives = 56/178 (31%), Gaps = 35/178 (19%)
Query: 686 PPK-ITIAAHRNLQLRCS---AHTEELLDVAYIWTHNGVRI-----GNMDLNE------- 729
P + N+ + C +L + W I G DL
Sbjct: 7 PKDLYVVEYGSNMTIECKFPVEKQLDLAALIVYWEMEDKNIIQFVHGEEDLKVQHSSYRQ 66
Query: 730 ---LETPNINIDGGLLEITNASFADAGEYECVVKSTVGKISTKTTVIVEGPPGLPGGVQV 786
L +++ L+IT+ DAG Y C++ S G + TV V P +
Sbjct: 67 RARLLKDQLSLGNAALQITDVKLQDAGVYRCMI-SYGGADYKRITVKVNAPYNKINQRIL 125
Query: 787 VEVHKTS-------------ATIQWTDGATNGRPITHYKIIARTNWNSTWFNVSEHVI 831
V TS A + WT ++ + ++ + FNV+ +
Sbjct: 126 VVDPVTSEHELTCQAEGYPKAEVIWTS--SDHQVLSGKTTTTNSKREEKLFNVTSTLR 181
>2ls8_A C-type lectin domain family 4 member D; structural genomics, NEW
YORK structural genomics research consortium, nysgrc,
PSI-biology, immune system; NMR {Homo sapiens}
Length = 156
Score = 66.7 bits (163), Expect = 6e-13
Identities = 20/85 (23%), Positives = 37/85 (43%), Gaps = 6/85 (7%)
Query: 29 CPQHWVQYRDSCYRFVKSPLKTRNDAKLNCKSLDSDLANVNDADEHGFIMYQLFWQDPQR 88
CP W ++ +CY + KT +++ NC + + L ++ E FI+ L +R
Sbjct: 3 CPIDWRAFQSNCYFPLTDN-KTWAESERNCSGMGAHLMTISTEAEQNFIIQFL----DRR 57
Query: 89 RKWYFGGT-QQSPNLWVNEDGTNLN 112
++ G + + W D T N
Sbjct: 58 LSYFLGLRDENAKGQWRWVDQTPFN 82
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein,
neurite growth regulation; HET: NAG BMA; 2.00A {Mus
musculus}
Length = 361
Score = 70.6 bits (173), Expect = 6e-13
Identities = 22/108 (20%), Positives = 34/108 (31%), Gaps = 3/108 (2%)
Query: 576 SSAQLRVLTLKPSFK-KRPLESETYAGEGGNVTIFCNPEAAPKPKFVWKKDGNII--GSG 632
S +L + F ES A G +TI C+ + K +
Sbjct: 233 HSKKLHNIFSLDFFNCSEYKESAWEAHLGDTLTIRCDTKQQGMTKVWVSPSNEQVLSQGS 292
Query: 633 GRRKIFENGNLLISPVSRDDSGIYSCTATNVHGMDESKGRLIVLHGPS 680
NG+L V +D G+Y+C A + L V +
Sbjct: 293 NGSVSVRNGDLFFKKVQVEDGGVYTCYAMGETFNETLSVELKVYNFTL 340
Score = 57.2 bits (138), Expect = 1e-08
Identities = 14/94 (14%), Positives = 27/94 (28%), Gaps = 5/94 (5%)
Query: 404 PKTFPEAPKAGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYFENF---NRILTIPNVKV 460
K GD + + C + + + + N L V+V
Sbjct: 251 YKESAWEAHLGDTLTIRCDTKQQGMTKVWVSPSNEQVLSQGSNGSVSVRNGDLFFKKVQV 310
Query: 461 EDQGEYICRASNDRSALESSVTISIQAEPNFTIP 494
ED G Y C A ++++ ++
Sbjct: 311 EDGGVYTCYAMG--ETFNETLSVELKVYNFTLHG 342
Score = 53.7 bits (129), Expect = 1e-07
Identities = 13/101 (12%), Positives = 25/101 (24%), Gaps = 6/101 (5%)
Query: 682 YEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGL 741
E L +RC + + +W L++ ++++ G
Sbjct: 249 SEYKESAWEAHLGDTLTIRCDTKQQ---GMTKVWVSPS---NEQVLSQGSNGSVSVRNGD 302
Query: 742 LEITNASFADAGEYECVVKSTVGKISTKTTVIVEGPPGLPG 782
L D G Y C + + V
Sbjct: 303 LFFKKVQVEDGGVYTCYAMGETFNETLSVELKVYNFTLHGH 343
Score = 46.0 bits (109), Expect = 4e-05
Identities = 14/73 (19%), Positives = 25/73 (34%), Gaps = 8/73 (10%)
Query: 210 NDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVEDR 269
+ +T+ C + V + S+ ++ G+L QVED
Sbjct: 262 DTLTIRCDTKQQGMTKVWV----SPSNEQVLS---QGSNGSVSVRNGDLFFKKV-QVEDG 313
Query: 270 GSYHCKASNKFGS 282
G Y C A + +
Sbjct: 314 GVYTCYAMGETFN 326
Score = 41.8 bits (98), Expect = 8e-04
Identities = 18/115 (15%), Positives = 35/115 (30%), Gaps = 19/115 (16%)
Query: 506 LTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQDNVLTIRYLNPERDPAMYQC 565
LT C+ + E + S+ +++ L + + E D +Y C
Sbjct: 264 LTIRCDTKQQGMTKVWVSPSNEQVLSQG----SNGSVSVRNGDLFFKKVQVE-DGGVYTC 318
Query: 566 RAKNQLKTRYSSAQLRVLTLKPSFKKRPLESETYAGEGGNVTIFCNPEAAPKPKF 620
A + S +L+V G + T+ + P+F
Sbjct: 319 YAMGETFNETLSVELKVYNFTL--------------HGHHDTLNAAADPWSHPQF 359
>2edx_A Protein tyrosine phosphatase, receptor type, F; LAR protein,
leukocyte antigen related, structural genomics, NPPSFA;
NMR {Homo sapiens}
Length = 134
Score = 65.9 bits (161), Expect = 6e-13
Identities = 25/111 (22%), Positives = 40/111 (36%), Gaps = 2/111 (1%)
Query: 867 GYGEPSSPSPQYNTPADKPYQAPSRIGGGGGKIGDLSISWEPLPREKQNAPNIYYKIFWR 926
G S T P P ++ + +SW P P + +N Y + +
Sbjct: 1 GSSGSSGTIEAR-TAQSTPSAPPQKVMCVSMGSTTVRVSWVPPPADSRNGVITQYSVAYE 59
Query: 927 KKNDTEFQSETLKEYGNVGIAVVRIPSEFYYTEYEVKVQAINDVGPGPESE 977
+ + + + + +TEY V V+A DVGPGPES
Sbjct: 60 AVDGEDRGRHVVDGISR-EHSSWDLVGLEKWTEYRVWVRAHTDVGPGPESS 109
Score = 50.8 bits (122), Expect = 1e-07
Identities = 27/117 (23%), Positives = 38/117 (32%), Gaps = 12/117 (10%)
Query: 777 PPGLPGGVQVVEVHKTSATIQWT---DGATNGRPITHYKIIARTNWNSTWFNVSEHVIGK 833
P P V V + T+ + W + NG IT Y + I +
Sbjct: 18 PSAPPQKVMCVSMGSTTVRVSWVPPPADSRNGV-ITQYSVAYEAVDGEDRGRHVVDGISR 76
Query: 834 EVDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPSPQYNTPADKPYQAPS 890
E + + L W+ Y V A ++G G SSP T D P P
Sbjct: 77 EHSSWD------LVG-LEKWTEYRVWVRAHTDVGPGPESSPV-LVRTDEDVPSGPPR 125
>2dn7_A Receptor-type tyrosine-protein phosphatase F; LAR protein,
leukocyte antigen related, structural genomics, NPPSFA;
NMR {Homo sapiens} SCOP: b.1.2.1
Length = 107
Score = 64.7 bits (158), Expect = 7e-13
Identities = 21/111 (18%), Positives = 37/111 (33%), Gaps = 13/111 (11%)
Query: 775 EGPPGLPGGVQVVEVHKTSATIQWTDGATNGRPITHYKIIARTNWNSTWFNVSEHVIGKE 834
PG + + +A +QW + Y++ + + GK+
Sbjct: 5 SSGPG-RPTMMISTTAMNTALLQWHPPKELPGELLGYRLQYCRADEARPNTID---FGKD 60
Query: 835 VDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPSPQYNTPADKP 885
+T + L +TY F++ A N G GE + TP D
Sbjct: 61 DQHFT------VTG-LHKGTTYIFRLAAKNRAGLGEEFEKEIR--TPEDLS 102
Score = 40.8 bits (96), Expect = 2e-04
Identities = 13/84 (15%), Positives = 28/84 (33%), Gaps = 22/84 (26%)
Query: 902 LSISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETLKEYGNVGIAVVRIPSEFYYT--- 958
+ W P P+E + Y++ + + ++ + + ++T
Sbjct: 23 ALLQWHP-PKE-LPGELLGYRLQYCRADEARPNTIDFG------------KDDQHFTVTG 68
Query: 959 -----EYEVKVQAINDVGPGPESE 977
Y ++ A N G G E E
Sbjct: 69 LHKGTTYIFRLAAKNRAGLGEEFE 92
>3m9z_A Killer cell lectin-like receptor subfamily B MEMB; C-type
lectin-like domain, domain swapping, disulfide bond,
transmembrane protein; 1.70A {Mus musculus} PDB: 3t3a_A
Length = 139
Score = 65.9 bits (161), Expect = 7e-13
Identities = 20/87 (22%), Positives = 39/87 (44%), Gaps = 5/87 (5%)
Query: 27 LRCPQHWVQYRDSCYRFVKSPLKTRNDAKLNCKSLDSDLANVNDADEHGFIMYQLFWQDP 86
L CPQ W+ +RD C+ + T + ++C + L + D +E F++ +
Sbjct: 4 LECPQDWLSHRDKCFHVSQVS-NTWEEGLVDCDGKGATLMLIQDQEELRFLLDSI---KE 59
Query: 87 QRRKWYFGGTQQSPN-LWVNEDGTNLN 112
+ ++ G P+ W +G+ LN
Sbjct: 60 KYNSFWIGLRYTLPDMNWKWINGSTLN 86
>2afp_A Protein (SEA raven type II antifreeze protein); recombinant SEA
raven protein, solution backbone fold, C- type lectin;
NMR {Hemitripterus americanus} SCOP: d.169.1.1
Length = 129
Score = 65.4 bits (160), Expect = 8e-13
Identities = 24/89 (26%), Positives = 34/89 (38%), Gaps = 14/89 (15%)
Query: 28 RCPQHWVQYRDSCYRFVKSPLKTRNDAKLNCKSLDSDLANVNDADEHGFI---MYQLFWQ 84
CP W D C + + T A+ NC L LA+++ +EH FI + W
Sbjct: 6 NCPAGWQPLGDRCIYYETTA-MTWALAETNCMKLGGHLASIHSQEEHSFIQTLNAGVVW- 63
Query: 85 DPQRRKWYFGGT-QQSPNLWVNEDGTNLN 112
GG+ W DGT +N
Sbjct: 64 --------IGGSACLQAGAWTWSDGTPMN 84
>2c6u_A CLEC1B protein; lectin, rhodocytin, aggretin, C-type lectin-like,
platelets, thrombosis; 1.6A {Homo sapiens}
Length = 122
Score = 65.1 bits (159), Expect = 9e-13
Identities = 19/93 (20%), Positives = 38/93 (40%), Gaps = 9/93 (9%)
Query: 29 CPQHWVQYRDSCYRFVKSPLKTRNDAKLNCKSLDSDLANVNDADEHGFIMYQL---FW-- 83
C +W Y DSCY F + T ++K C +++ L +++ + +I + W
Sbjct: 3 CDTNWRYYGDSCYGFFRHN-LTWEESKQYCTDMNATLLKIDNRNIVEYIKARTHLIRWVG 61
Query: 84 --QDPQRRKWYF-GGTQQSPNLWVNEDGTNLNE 113
+ W + G+ S N++ + N
Sbjct: 62 LSRQKSNEVWKWEDGSVISENMFEFLEDGKGNM 94
>1wj3_A KIAA1496 protein; beta sandwich, PANG, structural genomics, riken
structural genomics/proteomics initiative, RSGI,
neuropeptide; NMR {Homo sapiens} SCOP: b.1.2.1
Length = 117
Score = 64.9 bits (158), Expect = 9e-13
Identities = 23/112 (20%), Positives = 39/112 (34%), Gaps = 11/112 (9%)
Query: 867 GYGEPSSPSPQYNTPADKPYQAPSRIGGGGGKIGDLSISWEPLPREKQNAPNIYYKIFWR 926
G S T P Q P + + ++WE + + + YK+F+R
Sbjct: 1 GSSGSSGTVNVT-TKKTPPSQPPGNVVWNATD-TKVLLNWEQVKAMENESEVTGYKVFYR 58
Query: 927 KKNDTEFQS-ETLKEYGNVGIAVVRIPSEFYYTEYEVKVQAINDVGPGPESE 977
+ Q T K + + +Y ++V+A D G G SE
Sbjct: 59 TSSQNNVQVLNTNKTSAELVLP--------IKEDYIIEVKATTDGGDGTSSE 102
Score = 49.8 bits (119), Expect = 1e-07
Identities = 23/114 (20%), Positives = 36/114 (31%), Gaps = 17/114 (14%)
Query: 775 EGPPGLPGGVQVVEVHKTSATIQWT---DGATNGRPITHYKIIARTNWNSTWFNVSEHVI 831
+ PP P G V T + W +T YK+ RT+ + ++ +
Sbjct: 15 KTPPSQPPGNVVWNATDTKVLLNWEQVKAMENES-EVTGYKVFYRTSSQNNVQVLNTN-- 71
Query: 832 GKEVDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPSPQYNTPADKP 885
+ S E VL Y +V A + G G S + P
Sbjct: 72 -----------KTSAELVLPIKEDYIIEVKATTDGGDGTSSEQIRIPRITSSGP 114
>3bdw_B NKG2-A/NKG2-B type II integral membrane protein; NK cells,
receptor, glycoprotein, lectin, signal-A transmembrane,
immune system receptor; 2.50A {Homo sapiens} PDB: 3cdg_K
3cii_H
Length = 120
Score = 64.7 bits (158), Expect = 9e-13
Identities = 22/88 (25%), Positives = 38/88 (43%), Gaps = 13/88 (14%)
Query: 28 RCPQHWVQYRDSCYRFVKSPLKTRNDAKLNCKSLDSDLANVNDADEHGFIMYQL--FWQD 85
CP+ W+ Y +SCY K +T ++ L C S +S L ++++ +E F+ W
Sbjct: 6 HCPEEWITYSNSCYYIGKER-RTWEESLLACTSKNSSLLSIDNEEEMKFLSIISPSSW-- 62
Query: 86 PQRRKWYFGGTQQSPN-LWVNEDGTNLN 112
G + S + WV +G
Sbjct: 63 -------IGVFRNSSHHPWVTMNGLAFK 83
>2ee2_A Contactin-1; neural cell surface protein F3, glycoprotein GP135,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 119
Score = 64.7 bits (158), Expect = 9e-13
Identities = 25/114 (21%), Positives = 47/114 (41%), Gaps = 11/114 (9%)
Query: 867 GYGEPSSPSPQYNTPADKPYQAPSRIGGGGGKIGDLSISWEPLPREKQNAPNIYYKIFWR 926
G S + + D P +AP+ +G ++S+ WE + Y+I +
Sbjct: 1 GSSGSSGVAVIN-SAQDAPSEAPTEVGVKVLSSSEISVHWEHVL----EKIVESYQIRYW 55
Query: 927 KKNDTEFQSETLKEYGNVGIAVVR--IPSEFYYTEYEVKVQAINDVGPGPESEV 978
+D E + ++ A + +P T+Y ++V A N G GP S++
Sbjct: 56 AAHDKEEAANRVQVTSQEYSARLENLLP----DTQYFIEVGACNSAGCGPPSDM 105
Score = 47.3 bits (113), Expect = 1e-06
Identities = 22/98 (22%), Positives = 34/98 (34%), Gaps = 10/98 (10%)
Query: 777 PPGLPGGVQVVEVHKTSATIQWTDGATNGRPITHYKIIARTNWNSTWFNVSEHVIGKEVD 836
P P V V + + ++ W + Y+I W + V
Sbjct: 18 PSEAPTEVGVKVLSSSEISVHWEHVL-EKI-VESYQI-------RYWAAHDKEEAANRVQ 68
Query: 837 RYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSP 874
+ A +EN L+P + Y +V A N G G PS
Sbjct: 69 VTSQEYSARLEN-LLPDTQYFIEVGACNSAGCGPPSDM 105
>2ha1_A Fibronectin; beta sandwich, protein-protein complex, rigid BODY
docking, cell adhesion, structural protein; NMR {Homo
sapiens}
Length = 201
Score = 67.0 bits (163), Expect = 1e-12
Identities = 35/221 (15%), Positives = 64/221 (28%), Gaps = 44/221 (19%)
Query: 776 GPPGLPGGVQVVEVHKTSATIQWTDGATNGRPITHYKIIARTNWNSTWFNVSEHVIGKEV 835
GP + S IQW A I+ Y + R + E I +
Sbjct: 2 GPV--EVFITETPSQPNSHPIQWN--APQPSHISKYILRWRPKNSVGR--WKEATIPGHL 55
Query: 836 DRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEP----------SSPSPQYNTPADKP 885
+ YT I+ L P YE ++I+ + G+ E S+P +
Sbjct: 56 NSYT------IKG-LKPGVVYEGQLISIQQYGHQEVTRFDFTTTSTSTPVTSNTVTGETT 108
Query: 886 YQAPSRIGGGGGKIGD-----LSISWEPLPREKQNAPNIYYKIFWRKKNDTEF-QSETLK 939
+P + + +SW +++ + + + Q L
Sbjct: 109 PFSPLVATSE--SVTEITASSFVVSWVSAS-----DTVSGFRVEYELSEEGDEPQYLDLP 161
Query: 940 EYGNVGIAVVR--IPSEFYYTEYEVKVQAINDVGPGPESEV 978
+ +P +Y V V I++ G
Sbjct: 162 --STATSVNIPDLLPG----RKYIVNVYQISEDGEQSLILS 196
Score = 53.9 bits (129), Expect = 4e-08
Identities = 16/114 (14%), Positives = 31/114 (27%), Gaps = 12/114 (10%)
Query: 760 KSTVGKISTKTTVIVEGPPGLPGGVQVVEVHKTSATIQWTDGATNGRPITHYKIIARTNW 819
ST +T T P + V E+ +S + W ++ +++ +
Sbjct: 94 TSTPVTSNTVTGETTPFSPLVATSESVTEITASSFVVSWVSA---SDTVSGFRVEYELSE 150
Query: 820 NSTWFNVSEHVIGKEVDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSS 873
+ I + L+P Y V +E G
Sbjct: 151 EGDE--PQYLDLPSTATSVN------IPD-LLPGRKYIVNVYQISEDGEQSLIL 195
>3bdw_A Natural killer cells antigen CD94; NK cells, receptor,
glycoprotein, lectin, signal-A transmembrane, immune
system receptor; 2.50A {Homo sapiens} SCOP: d.169.1.1
PDB: 3cdg_J 1b6e_A 3cii_G
Length = 123
Score = 64.7 bits (158), Expect = 1e-12
Identities = 24/90 (26%), Positives = 37/90 (41%), Gaps = 19/90 (21%)
Query: 29 CPQHWVQYRDSCYRFVKSPLKTRNDAKLNCKSLDSDLANVNDADEHGFIM--YQLFW--- 83
C + WV YR +CY KT N+++ C S S L + + DE F+ Q +W
Sbjct: 5 CQEKWVGYRCNCYFISSEQ-KTWNESRHLCASQKSSLLQLQNTDELDFMSSSQQFYWIGL 63
Query: 84 -QDPQRRKWYFGGTQQSPNLWVNEDGTNLN 112
+ W LW +G+ L+
Sbjct: 64 SYSEEHTAW----------LWE--NGSALS 81
>2vuv_A Codakine; sugar-binding protein, C-type, lectin, mannose,
invertebrate; HET: CIT; 1.3A {Codakia orbicularis} PDB:
2vuz_A*
Length = 129
Score = 65.0 bits (159), Expect = 1e-12
Identities = 17/83 (20%), Positives = 32/83 (38%), Gaps = 1/83 (1%)
Query: 29 CPQHWVQYRDSCYRFVKSPLKTRNDAKLNCKSLDSDLANVNDADEHGFIMYQLFWQDPQR 88
CP W Q+ D CY + + + A+ +C++L LA + A E+ +++
Sbjct: 2 CPDGWTQFLDLCYIYQSAK-ASWASAQSSCQALGGILAEPDTACENEVLIHMCKENGDAG 60
Query: 89 RKWYFGGTQQSPNLWVNEDGTNL 111
+ G Q+ W
Sbjct: 61 SFGPWLGGQKVGGAWQWSSSGAA 83
>3ff7_C Killer cell lectin-like receptor subfamily G member 1;
KLRG1-cadherin complex, calcium, cell adhesion, cell
junction, cell membrane; 1.80A {Homo sapiens}
Length = 112
Score = 64.3 bits (157), Expect = 1e-12
Identities = 23/84 (27%), Positives = 32/84 (38%), Gaps = 8/84 (9%)
Query: 29 CPQHWVQYRDSCYRFVKSPLKTRNDAKLNCKSLDSDLANVNDADEHGFIMYQLFWQDPQR 88
CP W++Y + CY F K N + C + DS L + D E + L
Sbjct: 1 CPDRWMKYGNHCYYFSVEE-KDWNSSLEFCLARDSHLLVITDNQEMSLLQVFL-----SE 54
Query: 89 RKWYFGGTQQSPNLWVNEDGTNLN 112
+ G S W DG+ LN
Sbjct: 55 AFSWIGLRNNSGWRWE--DGSPLN 76
>3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33;
2.40A {Caenorhabditis elegans} PDB: 1koa_A
Length = 573
Score = 70.6 bits (173), Expect = 1e-12
Identities = 31/117 (26%), Positives = 43/117 (36%), Gaps = 5/117 (4%)
Query: 562 MYQCRAKNQLKTRYSSAQLRVLTLKPSFKKRPLESETYAGEGGNVTIFCNPEAAPKPKFV 621
R + A +P F +P +E GEG + +C A+ P
Sbjct: 458 YSSLRKHRPQEYSIRDAFWDRSEAQPRFIVKPYGTE--VGEGQSANFYCRVIASSPPVVT 515
Query: 622 WKKDGNIIGSGGRRKIFENGN---LLISPVSRDDSGIYSCTATNVHGMDESKGRLIV 675
W KD + + NGN L I+ V DD G Y+ A N +G E L V
Sbjct: 516 WHKDDRELKQSVKYMKRYNGNDYGLTINRVKGDDKGEYTVRAKNSYGTKEEIVFLNV 572
Score = 60.6 bits (147), Expect = 2e-09
Identities = 25/125 (20%), Positives = 42/125 (33%), Gaps = 18/125 (14%)
Query: 771 TVIVEGPPGLPGGVQVVEVHKTSATIQWT----DGATNGRPITHYKIIARTNWNSTWFNV 826
V P P + + + + W DG G +T+Y I R +W
Sbjct: 3 MVADVPEPEPPRFPIIENILDEAVILSWKPPALDG---GSLVTNYTIEKREAMGGSWSPC 59
Query: 827 SEHVIGKEVDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPSPQYNTPADKPY 886
++ R + L YEF++IA N+ G +P P+ P D+
Sbjct: 60 AK-----------SRYTYTTIEGLRAGKQYEFRIIAENKHGQSKPCEPTAPVLIPGDERK 108
Query: 887 QAPSR 891
+
Sbjct: 109 RRRGY 113
Score = 56.0 bits (135), Expect = 5e-08
Identities = 19/78 (24%), Positives = 29/78 (37%), Gaps = 4/78 (5%)
Query: 412 KAGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYF----ENFNRILTIPNVKVEDQGEYI 467
G C P W + L ++ + + LTI VK +D+GEY
Sbjct: 495 GEGQSANFYCRVIASSPPVVTWHKDDRELKQSVKYMKRYNGNDYGLTINRVKGDDKGEYT 554
Query: 468 CRASNDRSALESSVTISI 485
RA N E V +++
Sbjct: 555 VRAKNSYGTKEEIVFLNV 572
Score = 48.7 bits (116), Expect = 9e-06
Identities = 29/159 (18%), Positives = 48/159 (30%), Gaps = 23/159 (14%)
Query: 135 FSQSLKRWGFERVTGMEPLLFICEASIQKLHYLLNDDRTYQYGMDIENPDKIPRGPYFIK 194
S+K + PL I ++ L + + + D+ P FI
Sbjct: 434 IRDSIKTKYDAWPEPLPPLGRI--SNYSSLRKHRPQEYS----IRDAFWDRSEAQPRFIV 487
Query: 195 QPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLS 254
+P C P W K+D + +
Sbjct: 488 KPYGTEVGEG-----QSANFYCRVIASSPPVVTWHKDD--------RELKQSVKYMKRYN 534
Query: 255 GGN--LIINDPRQVEDRGSYHCKASNKFGSIISESVQLA 291
G + L IN + +D+G Y +A N +G+ E V L
Sbjct: 535 GNDYGLTINRVKG-DDKGEYTVRAKNSYGT-KEEIVFLN 571
Score = 48.3 bits (115), Expect = 1e-05
Identities = 20/120 (16%), Positives = 39/120 (32%), Gaps = 12/120 (10%)
Query: 467 ICRASNDRSALESSVTISIQAEPNFTIPLTDKHMDNQADLTWTCEAFGVPDVTYSWFRNG 526
+ + ++ + +A+P F + + + C +W ++
Sbjct: 461 LRKHRPQEYSIRDAFWDRSEAQPRFIVKPYGTEVGEGQSANFYCRVIASSPPVVTWHKDD 520
Query: 527 ELLNSETLPLEDQDRYFIQ--DNV--LTIRYLNPERDPAMYQCRAKNQLKTRYSSAQLRV 582
L+ +Y + N LTI + + D Y RAKN T+ L V
Sbjct: 521 R-------ELKQSVKYMKRYNGNDYGLTINRVKGD-DKGEYTVRAKNSYGTKEEIVFLNV 572
Score = 36.7 bits (85), Expect = 0.037
Identities = 11/65 (16%), Positives = 19/65 (29%), Gaps = 11/65 (16%)
Query: 714 IWTHNGVRIGNMDLNELETPNINI--DGGL--LEITNASFADAGEYECVVKSTVGKISTK 769
W + + ++ +G L I D GEY K++ G
Sbjct: 515 TWHKDDREL-------KQSVKYMKRYNGNDYGLTINRVKGDDKGEYTVRAKNSYGTKEEI 567
Query: 770 TTVIV 774
+ V
Sbjct: 568 VFLNV 572
>2yhf_A C-type lectin domain family 5 member A; immune system; 1.90A {Homo
sapiens}
Length = 118
Score = 64.3 bits (157), Expect = 1e-12
Identities = 18/92 (19%), Positives = 36/92 (39%), Gaps = 21/92 (22%)
Query: 29 CPQHWVQYRDSCYRFVKSPLKTRNDAKLNCKSLDSDLANVNDADEHGFIMYQL----FW- 83
CP+ W Y+ C+ S + N+++ CK S LA VN ++ F+ ++
Sbjct: 2 CPKDWEFYQARCFFLSTSE-SSWNESRDFCKGKGSTLAIVNTPEKLKFLQDITDAEKYFI 60
Query: 84 ---QDPQRRKWYFGGTQQSPNLWVNEDGTNLN 112
+ ++W W+ + + N
Sbjct: 61 GLIYHREEKRW----------RWI--NNSVFN 80
>1x5h_A Neogenin; RGM binding, fibronectin type III domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
b.1.2.1
Length = 132
Score = 64.7 bits (158), Expect = 1e-12
Identities = 29/113 (25%), Positives = 42/113 (37%), Gaps = 8/113 (7%)
Query: 867 GYGEPSSPSPQYNTPADKPYQAPSRIGGGGGKIGDLSISWEPLPREKQNAPNIYYKIFWR 926
G S T +D P AP + + I W+P QN YKI +R
Sbjct: 1 GSSGSSGDVAVR-TLSDVPSAAPQNLSLEVRNSKSIMIHWQPPAPATQNGQITGYKIRYR 59
Query: 927 KKNDTEFQSETLKEYGNVGIAVVR--IPSEFYYTEYEVKVQAINDVGPGPESE 977
K + +ETL G ++ TEY +V A+ G GP ++
Sbjct: 60 KASRKSDVTETLVS-GTQLSQLIEGLDR----GTEYNFRVAALTINGTGPATD 107
Score = 48.9 bits (117), Expect = 5e-07
Identities = 24/116 (20%), Positives = 34/116 (29%), Gaps = 14/116 (12%)
Query: 777 PPGLPGGVQVVEVHKTSATIQWT---DGATNGRPITHYKIIARTNWNSTWFNVSEHVIGK 833
P P + + + S I W NG+ IT YKI + S
Sbjct: 18 PSAAPQNLSLEVRNSKSIMIHWQPPAPATQNGQ-ITGYKI--------RYRKASRKSDVT 68
Query: 834 EVDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPSPQYNTPADKPYQAP 889
E + IE L + Y F+V A G G + T +
Sbjct: 69 ETLVSGTQLSQLIEG-LDRGTEYNFRVAALTINGTGPATDWL-SAETFESDLDETR 122
>2dlt_A Myosin binding protein C, fast-type; IG-like domain, mybpc2,
structural genomics, NPPSFA; NMR {Mus musculus}
Length = 106
Score = 63.9 bits (156), Expect = 1e-12
Identities = 24/105 (22%), Positives = 33/105 (31%), Gaps = 17/105 (16%)
Query: 576 SSAQLRVLTLKPSFKKRPLESETYAGEGGNVTIFCNPEAA-PKPKFVWKKDGNIIGSGGR 634
SS QL VL + + T C E + K W K+G + R
Sbjct: 5 SSGQLEVL--------QDIADLT-VKAAEQAVFKC--EVSDEKVTGKWYKNGVEVRPSKR 53
Query: 635 RKIFENGN---LLISPVSRDDSGIYSCTATNVHGMDESKGRLIVL 676
I G L+I V +D G Y+ +L L
Sbjct: 54 ITISHVGRFHKLVIDDVRPEDEGDYTFVPDGYAL--SLSAKLNFL 96
Score = 58.6 bits (142), Expect = 1e-10
Identities = 15/87 (17%), Positives = 30/87 (34%), Gaps = 8/87 (9%)
Query: 412 KAGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYF----ENFNRILTIPNVKVEDQGEYI 467
KA ++ +C + W + G + + L I +V+ ED+G+Y
Sbjct: 21 KAAEQAVFKCEVSD-EKVTGKWYKNGVEVRPSKRITISHVGRFHKLVIDDVRPEDEGDYT 79
Query: 468 CRASNDRSALESSVTISIQAEPNFTIP 494
+L + + E + P
Sbjct: 80 FVPDGYALSLSAKLNF---LEIKVSGP 103
Score = 58.2 bits (141), Expect = 2e-10
Identities = 22/107 (20%), Positives = 33/107 (30%), Gaps = 15/107 (14%)
Query: 486 QAEPNFTIPLTDKHMDNQADLTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQ 545
+ + D + + CE VT W++NG + R I
Sbjct: 6 SGQLEVLQDIADLTVKAAEQAVFKCEVSD-EKVTGKWYKNGV-------EVRPSKRITIS 57
Query: 546 DN----VLTIRYLNPERDPAMYQCRAKNQLKTRYSSAQLRVLTLKPS 588
L I + PE D Y + SA+L L +K S
Sbjct: 58 HVGRFHKLVIDDVRPE-DEGDYTFVPDGYALS--LSAKLNFLEIKVS 101
Score = 45.1 bits (107), Expect = 5e-06
Identities = 20/99 (20%), Positives = 30/99 (30%), Gaps = 21/99 (21%)
Query: 686 PPKI-------TIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINI- 737
++ T+ A +C E V W NGV + + I I
Sbjct: 8 QLEVLQDIADLTVKAAEQAVFKCEVSDE---KVTGKWYKNGVEVR-------PSKRITIS 57
Query: 738 -DGGL--LEITNASFADAGEYECVVKSTVGKISTKTTVI 773
G L I + D G+Y V +S K +
Sbjct: 58 HVGRFHKLVIDDVRPEDEGDYTFVPDGYALSLSAKLNFL 96
Score = 43.5 bits (103), Expect = 2e-05
Identities = 17/97 (17%), Positives = 30/97 (30%), Gaps = 21/97 (21%)
Query: 190 PYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDK 249
++ D+ ++ C + +W+K + P K
Sbjct: 9 LEVLQDIADLTVKAAE-----QAVFKCEVSD-EKVTGKWYKNG--------VEVRP--SK 52
Query: 250 RFTLSGGN----LIINDPRQVEDRGSYHCKASNKFGS 282
R T+S L+I+D + ED G Y S
Sbjct: 53 RITISHVGRFHKLVIDDV-RPEDEGDYTFVPDGYALS 88
Score = 29.7 bits (67), Expect = 1.7
Identities = 11/48 (22%), Positives = 19/48 (39%), Gaps = 5/48 (10%)
Query: 324 PGVNYYWARDYFPNFVEEDKRVFVSYDGA---LYFSALEQIDAGNYSC 368
V W ++ V KR+ +S+ G L + D G+Y+
Sbjct: 35 EKVTGKWYKNGVE--VRPSKRITISHVGRFHKLVIDDVRPEDEGDYTF 80
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4
complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB:
3zyo_A* 3zyn_A* 2dl9_A
Length = 452
Score = 69.8 bits (171), Expect = 2e-12
Identities = 24/105 (22%), Positives = 36/105 (34%), Gaps = 12/105 (11%)
Query: 586 KPSFKKRPLESETYAGEGGNVTIFCNPEAAPKPKFVWKKD-GNIIGS---GGRRKIFENG 641
P P + EG + C P W G ++ R + +G
Sbjct: 352 APFIMDAP--RDLNISEGRMAELKCR--TPPMSSVKWLLPNGTVLSHASRHPRISVLNDG 407
Query: 642 NLLISPVSRDDSGIYSCTATNVHGMDESKGRLIV----LHGPSYY 682
L S V D+G+Y+C TNV G + L V H ++
Sbjct: 408 TLNFSHVLLSDTGVYTCMVTNVAGNSNASAYLNVSTAGTHHHHHH 452
Score = 50.1 bits (120), Expect = 2e-06
Identities = 19/97 (19%), Positives = 37/97 (38%), Gaps = 10/97 (10%)
Query: 684 QLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTH-NGVRIGNMDLNELETPNINI-DGGL 741
P + I+ R +L+C + W NG + + + P I++ + G
Sbjct: 357 DAPRDLNISEGRMAELKCRTPPM----SSVKWLLPNGTVLSHASRH----PRISVLNDGT 408
Query: 742 LEITNASFADAGEYECVVKSTVGKISTKTTVIVEGPP 778
L ++ +D G Y C+V + G + + V
Sbjct: 409 LNFSHVLLSDTGVYTCMVTNVAGNSNASAYLNVSTAG 445
Score = 47.8 bits (114), Expect = 1e-05
Identities = 15/81 (18%), Positives = 27/81 (33%), Gaps = 7/81 (8%)
Query: 414 GDKVRLECVAFGYPVPSYNWTRRGSPLPRNA-----YFENFNRILTIPNVKVEDQGEYIC 468
G L+C P+ S W + +A + L +V + D G Y C
Sbjct: 367 GRMAELKCRT--PPMSSVKWLLPNGTVLSHASRHPRISVLNDGTLNFSHVLLSDTGVYTC 424
Query: 469 RASNDRSALESSVTISIQAEP 489
+N +S +++
Sbjct: 425 MVTNVAGNSNASAYLNVSTAG 445
Score = 38.6 bits (90), Expect = 0.009
Identities = 14/73 (19%), Positives = 26/73 (35%), Gaps = 8/73 (10%)
Query: 210 NDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVEDR 269
L C P S +W + ++++ + L+ G L + + D
Sbjct: 368 RMAELKCRTP--PMSSVKWLLPN---GTVLSH--ASRHPRISVLNDGTLNFSHV-LLSDT 419
Query: 270 GSYHCKASNKFGS 282
G Y C +N G+
Sbjct: 420 GVYTCMVTNVAGN 432
Score = 35.5 bits (82), Expect = 0.076
Identities = 17/86 (19%), Positives = 28/86 (32%), Gaps = 9/86 (10%)
Query: 505 DLTWTCEAFGVPDVTYSWFR-NGELLNSETLPLEDQDRYFIQDN-VLTIRYLNPERDPAM 562
C + V W NG +L+ + R + ++ L ++ D +
Sbjct: 369 MAELKCRTPPMSSVK--WLLPNGTVLSHAS----RHPRISVLNDGTLNFSHVLLS-DTGV 421
Query: 563 YQCRAKNQLKTRYSSAQLRVLTLKPS 588
Y C N +SA L V T
Sbjct: 422 YTCMVTNVAGNSNASAYLNVSTAGTH 447
Score = 30.1 bits (68), Expect = 3.7
Identities = 13/51 (25%), Positives = 18/51 (35%), Gaps = 3/51 (5%)
Query: 318 DPPTNYPGVNYYWARDYFPNFVEEDKRVFVSYDGALYFSALEQIDAGNYSC 368
P V + + R+ V DG L FS + D G Y+C
Sbjct: 377 PPM---SSVKWLLPNGTVLSHASRHPRISVLNDGTLNFSHVLLSDTGVYTC 424
>3g8k_A Lectin-related NK cell receptor LY49L1; natural killer cell
receptor, immune system; 2.00A {Mus musculus} PDB:
1qo3_C 3cad_A
Length = 130
Score = 64.7 bits (158), Expect = 2e-12
Identities = 18/92 (19%), Positives = 33/92 (35%), Gaps = 21/92 (22%)
Query: 29 CPQHWVQYRDSCYRFVKSPLKTRNDAKLNCKSLDSDLANVNDADEHGFIMYQL----FW- 83
++W Y CY FV KT + K C+ L +++ DE F+ + +W
Sbjct: 7 FEKYWFCYGIKCYYFVMDR-KTWSGCKQTCQISSLSLLKIDNEDELKFLKLLVPSDSYWI 65
Query: 84 ---QDPQRRKWYFGGTQQSPNLWVNEDGTNLN 112
D +++ W W+ +
Sbjct: 66 GLSYDNKKKDW----------AWI--NNGPSK 85
>3c22_A C-type lectin domain family 4 member K; coiled coil, glycoprotein,
membrane, signal-anchor, transmembrane, immune system,
sugar binding protein; 1.50A {Homo sapiens} PDB: 3p5g_A*
3p5d_A* 3p5f_A* 3p5e_A* 3p5h_A* 3p5i_A* 3p7g_A* 3p7f_A*
3p7h_A* 3bc7_A* 3bbs_A* 3bc6_A*
Length = 156
Score = 65.2 bits (159), Expect = 2e-12
Identities = 21/85 (24%), Positives = 30/85 (35%), Gaps = 7/85 (8%)
Query: 29 CPQHWVQYRDSCYRFVKSPLKTRNDAKLNCKSLDSDLANVNDADEHGFIMYQLFWQDPQR 88
Q W ++ + Y F P KT A+ C S +S L +V E F+
Sbjct: 23 VSQGWKYFKGNFYYFSLIP-KTWYSAEQFCVSRNSHLTSVTSESEQEFLYKTA-----GG 76
Query: 89 RKWYFGGT-QQSPNLWVNEDGTNLN 112
++ G T W D T N
Sbjct: 77 LIYWIGLTKAGMEGDWSWVDDTPFN 101
>2ox9_A Collectin placenta 1; C-type lectin, sugar binding protein; HET:
GAL NAG FUC; 1.95A {Mus musculus} PDB: 2ox8_A
Length = 140
Score = 64.7 bits (158), Expect = 2e-12
Identities = 24/85 (28%), Positives = 37/85 (43%), Gaps = 6/85 (7%)
Query: 29 CPQHWVQYRDSCYRFVKSPLKTRNDAKLNCKSLDSDLANVNDADEHGFIMYQLFWQDPQR 88
CP HW + D CY F + DAKL C+ S L +N +E +I ++
Sbjct: 5 CPPHWKNFTDKCYYFSLEK-EIFEDAKLFCEDKSSHLVFINSREEQQWIKKHTVGRESH- 62
Query: 89 RKWYFGGT-QQSPNLWVNEDGTNLN 112
W G T + + W DG+ ++
Sbjct: 63 --W-IGLTDSEQESEWKWLDGSPVD 84
>3kqg_A Langerin, C-type lectin domain family 4 member K; trimer, NECK and
CRD, coiled coil, immune system; 2.30A {Homo sapiens}
Length = 182
Score = 66.0 bits (161), Expect = 2e-12
Identities = 21/85 (24%), Positives = 32/85 (37%), Gaps = 7/85 (8%)
Query: 29 CPQHWVQYRDSCYRFVKSPLKTRNDAKLNCKSLDSDLANVNDADEHGFIMYQLFWQDPQR 88
Q W ++ + Y F P KT A+ C S +S L +V E F+ ++
Sbjct: 49 VSQGWKYFKGNFYYFSLIP-KTWYSAEQFCVSRNSHLTSVTSESEQEFL-----YKTAGG 102
Query: 89 RKWYFGGT-QQSPNLWVNEDGTNLN 112
++ G T W D T N
Sbjct: 103 LIYWIGLTKAGMEGDWSWVDDTPFN 127
>1he7_A High affinity nerve growth factor receptor; transferase,
TRK-receptor, strand-swapping; 2.0A {Homo sapiens} SCOP:
b.1.1.4 PDB: 1wwa_X 1www_X
Length = 126
Score = 64.2 bits (156), Expect = 2e-12
Identities = 14/93 (15%), Positives = 31/93 (33%), Gaps = 10/93 (10%)
Query: 605 NVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKI----------FENGNLLISPVSRDDSG 654
+ I + + P P W +G+++ +G L ++ + ++G
Sbjct: 17 HWCIPFSVDGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQPTHVNNG 76
Query: 655 IYSCTATNVHGMDESKGRLIVLHGPSYYEQLPP 687
Y+ A N G + + P + P
Sbjct: 77 NYTLLAANPFGQASASIMAAFMDNPFEFNPEDP 109
Score = 58.0 bits (140), Expect = 3e-10
Identities = 16/106 (15%), Positives = 27/106 (25%), Gaps = 17/106 (16%)
Query: 406 TFP------EAPKAGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYF-----------EN 448
+ + G P PS W GS L ++
Sbjct: 1 SHMPASVQLHTAVEMHHWCIPFSVDGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETV 60
Query: 449 FNRILTIPNVKVEDQGEYICRASNDRSALESSVTISIQAEPNFTIP 494
+ L + + G Y A+N +S+ + P P
Sbjct: 61 RHGCLRLNQPTHVNNGNYTLLAANPFGQASASIMAAFMDNPFEFNP 106
Score = 55.7 bits (134), Expect = 2e-09
Identities = 12/93 (12%), Positives = 23/93 (24%), Gaps = 7/93 (7%)
Query: 715 WTHNGVRIGNMDLNELE----TPNINIDGGLLEITNASFADAGEYECVVKSTVGKISTKT 770
W NG + E N + G L + + + G Y + + G+ S
Sbjct: 34 WLFNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQPTHVNNGNYTLLAANPFGQASASI 93
Query: 771 TVIVEGPPGLP---GGVQVVEVHKTSATIQWTD 800
P + + +
Sbjct: 94 MAAFMDNPFEFNPEDPIPDTNSTSGDPVEKKDE 126
Score = 51.5 bits (123), Expect = 5e-08
Identities = 20/85 (23%), Positives = 31/85 (36%), Gaps = 3/85 (3%)
Query: 209 LNDITLSCYAGGYPNPSYEWFKED-YVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVE 267
++ + G P PS W + + T+ G L +N P
Sbjct: 15 MHHWCIPFSVDGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQPTH-V 73
Query: 268 DRGSYHCKASNKFGSIISESVQLAF 292
+ G+Y A+N FG S S+ AF
Sbjct: 74 NNGNYTLLAANPFGQ-ASASIMAAF 97
Score = 45.7 bits (108), Expect = 6e-06
Identities = 15/78 (19%), Positives = 23/78 (29%), Gaps = 5/78 (6%)
Query: 510 CEAFGVPDVTYSWFRNGELLNS----ETLPLEDQDRYFIQDNVLTIRYLNPERDPAMYQC 565
G P + W NG +LN T LE ++ L + + Y
Sbjct: 22 FSVDGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQPTHV-NNGNYTL 80
Query: 566 RAKNQLKTRYSSAQLRVL 583
A N +S +
Sbjct: 81 LAANPFGQASASIMAAFM 98
Score = 28.0 bits (62), Expect = 7.3
Identities = 6/42 (14%), Positives = 12/42 (28%)
Query: 333 DYFPNFVEEDKRVFVSYDGALYFSALEQIDAGNYSCNVQSKV 374
+ E G L + ++ GNY+ +
Sbjct: 45 SFIFTEFLEPAANETVRHGCLRLNQPTHVNNGNYTLLAANPF 86
>1hq8_A NKG2-D; homodimer, CIS-proline, apoptosis; 1.95A {Mus musculus}
SCOP: d.169.1.1 PDB: 1jsk_A 1kcg_A*
Length = 123
Score = 63.9 bits (156), Expect = 2e-12
Identities = 24/91 (26%), Positives = 40/91 (43%), Gaps = 19/91 (20%)
Query: 28 RCPQHWVQYRDSCYRFVKSPLKTRNDAKLNCKSLDSDLANVNDADEHGFIMYQL--FW-- 83
CP +W+ +R++CY+F KT N ++ +C S +S L + +E F+ W
Sbjct: 5 PCPNNWICHRNNCYQFFNEE-KTWNQSQASCLSQNSSLLKIYSKEEQDFLKLVKSYHWMG 63
Query: 84 --QDPQRRKWYFGGTQQSPNLWVNEDGTNLN 112
Q P W W DG++L+
Sbjct: 64 LVQIPANGSW----------QWE--DGSSLS 82
>3ff9_A Killer cell lectin-like receptor subfamily G member 1; natural
killer cell receptor KLTG1, glycoprotein, membrane,
phosphoprotein, signal-anchor; 1.80A {Mus musculus} PDB:
3ff8_C
Length = 115
Score = 63.5 bits (155), Expect = 2e-12
Identities = 19/87 (21%), Positives = 26/87 (29%), Gaps = 9/87 (10%)
Query: 29 CPQHWVQYRDSCYRFVKSPLKTRNDAKLNCKSLDSDLANVNDADEHGFIMYQL----FW- 83
CP W + CY F K N + C S L D L +W
Sbjct: 2 CPILWTRNGSHCYYFSMEK-KDWNSSLKFCADKGSHLLTFPDNQGVKLFGEYLGQDFYWI 60
Query: 84 --QDPQRRKWYFGGTQQSPNLWVNEDG 108
++ +W GG S + N
Sbjct: 61 GLRNIDGWRW-EGGPALSLRILTNSLI 86
>2wng_A Tyrosine-protein phosphatase non-receptor type substrate 1; signal
regulatory protein alpha, immunoglobulin superfamily,
phosphoprotein; HET: NAG; 2.49A {Homo sapiens}
Length = 327
Score = 68.4 bits (167), Expect = 2e-12
Identities = 48/298 (16%), Positives = 89/298 (29%), Gaps = 56/298 (18%)
Query: 412 KAGDKVRLECVAFGY-PVPSYNWTRRGSPLPR---NAYFENFNRI--------------- 452
AG+ L C PV W R P N +F R+
Sbjct: 16 AAGESAILHCTVTSLIPVGPIQWFRGAGPARELIYNQKEGHFPRVTTVSESTKRENMDFS 75
Query: 453 LTIPNVKVEDQGEYICRASNDRSA-------LESSVTISIQAEPNFTIPLTDKHMDNQAD 505
++I N+ D G Y C S + +++ + +
Sbjct: 76 ISISNITPADAGTYYCVKFRKGSPDTEFKSGAGTELSVRAKPSAPVVSGPAARATPQHT- 134
Query: 506 LTWTCEAFGV--PDVTYSWFRNGELLNS--ETLPLEDQDRYFIQDNVLTIRYLNPERDPA 561
+++TCE+ G D+T WF+NG L+ + + + + + L E +
Sbjct: 135 VSFTCESHGFSPRDITLKWFKNGNELSDFQTNVDPVGESVSYSIHSTAKVV-LTREDVHS 193
Query: 562 MYQCRAKNQLKTRYSSAQLRVLTLKPSFKKRPLESETYAG----EGGNVTIFC-----NP 612
C + T S R + V + C P
Sbjct: 194 QVICEVAHV----TLQGDPLRGTANLSETIRVPPTLEVTQQPVRAENQVNVTCQVRKFYP 249
Query: 613 EAAPKPKFVWKKDGNIIGSGGRRKIFENGN--------LLISPVSRDDSGIYSCTATN 662
+ + W ++GN+ + + EN + LL++ + D +C +
Sbjct: 250 QRL---QLTWLENGNVSRTETASTVTENKDGTYNWMSWLLVNVSAHRDDVKLTCQVEH 304
>1dv8_A Asialoglycoprotein receptor 1; C-type lectin CRD, signaling
protein; 2.30A {Homo sapiens} SCOP: d.169.1.1
Length = 128
Score = 63.9 bits (156), Expect = 2e-12
Identities = 24/84 (28%), Positives = 37/84 (44%), Gaps = 7/84 (8%)
Query: 29 CPQHWVQYRDSCYRFVKSPLKTRNDAKLNCKSLDSDLANVNDADEHGFIMYQLFWQDPQR 88
CP +WV++ SCY F +S K DA C+ D+ L V +E F+ + +
Sbjct: 1 CPVNWVEHERSCYWFSRSG-KAWADADNYCRLEDAHLVVVTSWEEQKFVQHHI-----GP 54
Query: 89 RKWYFGGTQQSPNLWVNEDGTNLN 112
+ G Q+ W DGT+
Sbjct: 55 VNTWMGLHDQN-GPWKWVDGTDYE 77
>1wfu_A Unnamed protein product; FN3 domain, similar to 1700007B22RIK
protein, structural genomics, riken structural
genomics/proteomics initiative, RSGI; NMR {Mus musculus}
SCOP: b.1.2.1
Length = 120
Score = 63.8 bits (155), Expect = 3e-12
Identities = 22/125 (17%), Positives = 35/125 (28%), Gaps = 18/125 (14%)
Query: 767 STKTTVIVEGPPGLPGGVQVVEVHKTSATIQWTDGATNGRP-----ITHYKIIARTNWNS 821
S+ P P V +V S + W R + I
Sbjct: 5 SSGMEPHKVVPLSKPHPPVVGKVTHHSIELYWDLEQKEKRQGPQEQWLRFSIEEEDPKMH 64
Query: 822 TWFNVSEHVIGKEVDRYTGRK-EASIENVLVPWSTYEFKVIAGNELGYGEPSSPSPQYNT 880
++ + YTG +E L P + Y+F++ + G E S T
Sbjct: 65 SYGVI-----------YTGYATRHVVEG-LEPRTLYKFRLKVTSPSGEYEYSPVVSVATT 112
Query: 881 PADKP 885
P
Sbjct: 113 RESGP 117
Score = 38.8 bits (90), Expect = 0.001
Identities = 26/114 (22%), Positives = 40/114 (35%), Gaps = 10/114 (8%)
Query: 867 GYGEPSSPSPQYNTPADKPYQAPSRIGGGGGKIGDLSI--SWEPLPREKQNAPNIYYKIF 924
G S P P KP P GK+ SI W+ +EK+ P + F
Sbjct: 1 GSSGSSGMEPHKVVPLSKP-HPPV-----VGKVTHHSIELYWDLEQKEKRQGPQEQWLRF 54
Query: 925 WRKKNDTEFQSETLKEYGNVGIAVVRIPSEFYYTEYEVKVQAINDVGPGPESEV 978
++ D + S + G VV T Y+ +++ + G S V
Sbjct: 55 SIEEEDPKMHSYGVIYTGYATRHVVEGLEPR--TLYKFRLKVTSPSGEYEYSPV 106
>1mpu_A NKG2-D type II integral membrane protein; C-type lectin-like
domain, immune system; 2.50A {Homo sapiens} SCOP:
d.169.1.1 PDB: 1hyr_B
Length = 138
Score = 64.0 bits (156), Expect = 3e-12
Identities = 19/91 (20%), Positives = 37/91 (40%), Gaps = 19/91 (20%)
Query: 28 RCPQHWVQYRDSCYRFVKSPLKTRNDAKLNCKSLDSDLANVNDADEHGFIMYQL--FW-- 83
CP++W+ Y+++CY+F K +++ +C S ++ L V ++ + W
Sbjct: 20 PCPKNWICYKNNCYQFFDES-KNWYESQASCMSQNASLLKVYSKEDQDLLKLVKSYHWMG 78
Query: 84 --QDPQRRKWYFGGTQQSPNLWVNEDGTNLN 112
P W W DG+ L+
Sbjct: 79 LVHIPTNGSW----------QWE--DGSILS 97
>1jwi_B Platelet aggregation inducer; domain swapping, C-type lectin,
toxin; 2.00A {Bitis arietans} SCOP: d.169.1.1 PDB:
1uex_B
Length = 125
Score = 63.6 bits (155), Expect = 3e-12
Identities = 24/90 (26%), Positives = 33/90 (36%), Gaps = 5/90 (5%)
Query: 26 ELRCPQHWVQYRDSCYRFVKSPLKTRNDAKLNCKSLD--SDLANVNDADEHGFIMYQLFW 83
+ C W Y+ CY+ K KT DA+ CK L L +VN +E FI
Sbjct: 1 DEGCLPDWSSYKGHCYKVFKVE-KTWADAEKFCKELVNGGHLMSVNSREEGEFISKLALE 59
Query: 84 QDPQRRKWYFGGT-QQSPNLWVNEDGTNLN 112
+ W G + DG L+
Sbjct: 60 KMRIVLVW-IGLSHFWRICPLRWTDGARLD 88
>2h2t_B Low affinity immunoglobulin epsilon FC receptor ( IGE receptor)
(FC-epsilon-RII)...; C-type lectin, calcium-bound,
lectin domain; 1.30A {Homo sapiens} PDB: 2h2r_A 1t8c_A
1t8d_A
Length = 175
Score = 65.2 bits (159), Expect = 3e-12
Identities = 16/85 (18%), Positives = 36/85 (42%), Gaps = 7/85 (8%)
Query: 29 CPQHWVQYRDSCYRFVKSPLKTRNDAKLNCKSLDSDLANVNDADEHGFIMYQLFWQDPQR 88
CP+ W+ ++ CY F K K A+ C ++ L +++ +E F+ +
Sbjct: 17 CPEKWINFQRKCYYFGKGT-KQWVHARYACDDMEGQLVSIHSPEEQDFLTKRA-----SH 70
Query: 89 RKWYFGGT-QQSPNLWVNEDGTNLN 112
+ G ++ DG++++
Sbjct: 71 TGSWIGLRNLDLKGEFIWVDGSHVD 95
>1wfo_A Sidekick 2; FN3, cell adhesion, structural genomics, riken
structural genomics/proteomics initiative, RSGI; NMR
{Homo sapiens} SCOP: b.1.2.1
Length = 130
Score = 63.6 bits (155), Expect = 4e-12
Identities = 29/111 (26%), Positives = 41/111 (36%), Gaps = 8/111 (7%)
Query: 775 EGPPGLPGGVQVVEVHKTSATIQWTDGATNGRPITHYKIIARTNWNSTWFNVSEHVIGKE 834
+ PG P G+ EV TS + W A I Y+I R N +T + V+
Sbjct: 25 DDVPGPPMGILFPEVRTTSVRLIWQPPAAPNGIILAYQITHRLN-TTTANTATVEVLAPS 83
Query: 835 VDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPSPQYNTPADKP 885
+YT L P S Y F++ A G+GE + P
Sbjct: 84 ARQYT------ATG-LKPESVYLFRITAQTRKGWGEAAEALVVTTEKRSGP 127
Score = 59.0 bits (143), Expect = 2e-10
Identities = 24/124 (19%), Positives = 38/124 (30%), Gaps = 19/124 (15%)
Query: 862 AGNELGYGEPSSPSPQYNTPADKPYQAPSRIGGGGGKIGDLS-----ISWEPLPREKQNA 916
+ +G G PS P T D P P I ++ + W+P P N
Sbjct: 5 SSGRIGDGSPSHPPILERTLDDVP-GPPMGI-----LFPEVRTTSVRLIWQP-P-AAPNG 56
Query: 917 PNIYYKIFWRKKNDTEFQSETLKEYGNVGIAVVR--IPSEFYYTEYEVKVQAINDVGPGP 974
+ Y+I R T + + P + Y ++ A G G
Sbjct: 57 IILAYQITHRLNTTTANTATVEVLAPSARQYTATGLKP----ESVYLFRITAQTRKGWGE 112
Query: 975 ESEV 978
+E
Sbjct: 113 AAEA 116
>2e3x_C Coagulation factor X-activating enzyme light CHAI; disintegrin,
metalloproteinase, C-type lectin, hydrolase, BL
clotting, toxin; HET: NAG MAN GM6; 2.91A {Daboia
russellii siamensis}
Length = 122
Score = 63.2 bits (154), Expect = 4e-12
Identities = 19/89 (21%), Positives = 32/89 (35%), Gaps = 5/89 (5%)
Query: 27 LRCPQHWVQYRDSCYRFVKSPLKTRNDAKLNCKSLD--SDLANVNDADEHGFIMYQLFWQ 84
L CP W+ Y CY+ K DA+ C S L +++ +E F+ L +
Sbjct: 1 LDCPSGWLSYEQHCYKGFNDL-KNWTDAEKFCTEQKKGSHLVSLHSREEEKFV-VNLISE 58
Query: 85 DPQRRKWYFGGT-QQSPNLWVNEDGTNLN 112
+ + + G D N+
Sbjct: 59 NLEYPATWIGLGNMWKDCRMEWSDRGNVK 87
>2e6p_A Obscurin-like protein 1; IG-like domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 104
Score = 62.4 bits (152), Expect = 4e-12
Identities = 15/75 (20%), Positives = 26/75 (34%), Gaps = 5/75 (6%)
Query: 412 KAGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYF----ENFNRILTIPNVKVEDQGEYI 467
++V L C W + G + + + L +P KV+D GE+
Sbjct: 23 TTSERVVLTCEL-SRVDFPATWYKDGQKVEESELLVVKMDGRKHRLILPEAKVQDSGEFE 81
Query: 468 CRASNDRSALESSVT 482
CR + +V
Sbjct: 82 CRTEGVSAFFGVTVQ 96
Score = 60.5 bits (147), Expect = 2e-11
Identities = 15/93 (16%), Positives = 26/93 (27%), Gaps = 9/93 (9%)
Query: 587 PSFKKRPLE-SETYAGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGN--- 642
P P + V + C + W KDG + + +G
Sbjct: 8 PVHILSPQDKVSLTFTTSERVVLTCEL-SRVDFPATWYKDGQKVEESELLVVKMDGRKHR 66
Query: 643 LLISPVSRDDSGIYSCTATNVHGMDESKGRLIV 675
L++ DSG + C + + V
Sbjct: 67 LILPEAKVQDSGEFECRTEG----VSAFFGVTV 95
Score = 50.1 bits (120), Expect = 1e-07
Identities = 22/99 (22%), Positives = 35/99 (35%), Gaps = 18/99 (18%)
Query: 689 ITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINI--DGGL--LEI 744
+T + L C D W +G ++ E+ + + DG L +
Sbjct: 20 LTFTTSERVVLTCELSRV---DFPATWYKDGQKV-------EESELLVVKMDGRKHRLIL 69
Query: 745 TNASFADAGEYECVVKSTVGKISTKTTVIVEGPPGLPGG 783
A D+GE+EC +S V V+ P G G
Sbjct: 70 PEAKVQDSGEFECR----TEGVSAFFGVTVQDPSGPSSG 104
Score = 43.2 bits (102), Expect = 3e-05
Identities = 12/82 (14%), Positives = 31/82 (37%), Gaps = 17/82 (20%)
Query: 505 DLTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQDN----VLTIRYLNPERDP 560
+ TCE D +W+++G+ +E+ + ++ + L + + D
Sbjct: 27 RVVLTCELSR-VDFPATWYKDGQ-------KVEESELLVVKMDGRKHRLILPEAKVQ-DS 77
Query: 561 AMYQCRAKNQLKTRYSSAQLRV 582
++CR + + + V
Sbjct: 78 GEFECRTEGV----SAFFGVTV 95
Score = 38.1 bits (89), Expect = 0.002
Identities = 11/74 (14%), Positives = 25/74 (33%), Gaps = 12/74 (16%)
Query: 211 DITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGN--LIINDPRQVED 268
+ L+C + W+K+ ++ + G LI+ + +V+D
Sbjct: 27 RVVLTCELSR-VDFPATWYKDG--------QKVEESELLVVKMDGRKHRLILPEA-KVQD 76
Query: 269 RGSYHCKASNKFGS 282
G + C+
Sbjct: 77 SGEFECRTEGVSAF 90
Score = 27.7 bits (62), Expect = 6.5
Identities = 12/57 (21%), Positives = 21/57 (36%), Gaps = 5/57 (8%)
Query: 322 NYPGVNYYWARDYFPNFVEEDKRVFVSYDGA---LYFSALEQIDAGNYSCNVQSKVS 375
+ W +D VEE + + V DG L + D+G + C + +
Sbjct: 35 SRVDFPATWYKDGQK--VEESELLVVKMDGRKHRLILPEAKVQDSGEFECRTEGVSA 89
>3ubu_B Agglucetin subunit beta-2; platelet inhibiting, agkisacucetin,
dimer, toxin, C-type LEC GPIB inhibitor, GPIB binding;
1.91A {Deinagkistrodon acutus}
Length = 126
Score = 63.2 bits (154), Expect = 5e-12
Identities = 23/87 (26%), Positives = 36/87 (41%), Gaps = 5/87 (5%)
Query: 29 CPQHWVQYRDSCYRFVKSPLKTRNDAKLNC--KSLDSDLANVNDADEHGFIMYQLFWQDP 86
CP W Y CY VK KT +DA+ C + L +V+ +E F+++ +
Sbjct: 4 CPLRWSAYEGHCYLVVKEK-KTWDDAEKFCTEQRKGGHLVSVHSREEADFLVHLAYPILD 62
Query: 87 QRRKWYFGGT-QQSPNLWVNEDGTNLN 112
W G + + DGT L+
Sbjct: 63 LSLIW-MGLSNMWNDCKREWSDGTKLD 88
>1qdd_A Lithostathine; pancreatic stone inhibitor, metal binding protein;
HET: SIA NDG GAL; 1.30A {Homo sapiens} SCOP: d.169.1.1
PDB: 1lit_A
Length = 144
Score = 63.6 bits (155), Expect = 5e-12
Identities = 20/86 (23%), Positives = 36/86 (41%), Gaps = 3/86 (3%)
Query: 29 CPQHWVQYRDSCYRFVKSPLKTRNDAKLNCKSLDS-DLANVNDADEHGFIMYQLFWQDPQ 87
CP+ YR CY F + +T DA L C++++S +L +V E F+ +
Sbjct: 14 CPEGTNAYRSYCYYFNEDR-ETWVDADLYCQNMNSGNLVSVLTQAEGAFVASLIKESGTD 72
Query: 88 RRKWYFGGT-QQSPNLWVNEDGTNLN 112
+ G + W G+ ++
Sbjct: 73 DFNVWIGLHDPKKNRAWHWSSGSLVS 98
>3c8j_A Natural killer cell receptor LY49C; MHC, virus, immune system;
2.60A {Mus musculus} SCOP: d.169.1.1 PDB: 3c8k_D 1p4l_D
1ja3_A 1p1z_D
Length = 203
Score = 64.9 bits (158), Expect = 5e-12
Identities = 17/86 (19%), Positives = 30/86 (34%), Gaps = 7/86 (8%)
Query: 28 RCPQHWVQYRDSCYRFVKSPLKTRNDAKLNCKSLDSDLANVNDADEHGFIMYQLFWQDPQ 87
R ++W Y CY F+ + T + K NC+ + + D DE F+ +
Sbjct: 79 RGVKYWFCYSTKCYYFIMNK-TTWSGCKANCQHYGVPILKIEDEDELKFLQRHV-----I 132
Query: 88 RRKWYFGGTQQSPN-LWVNEDGTNLN 112
++ G + W D
Sbjct: 133 PGNYWIGLSYDKKKKEWAWIDNGPSK 158
>2edf_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 103
Score = 61.9 bits (151), Expect = 6e-12
Identities = 15/81 (18%), Positives = 33/81 (40%), Gaps = 9/81 (11%)
Query: 414 GDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYF----ENFNRILTIPNVKVEDQGEYICR 469
G+ V L C P +W + + ++ + E +L I ++D GEY C
Sbjct: 23 GEDVELRCELSRAGTP-VHWLKDRKAIRKSQKYDVVCEGTMAMLVIRGASLKDAGEYTCE 81
Query: 470 ASNDRSALESSVTISIQAEPN 490
+ S+ ++ ++ + +
Sbjct: 82 VEASK----STASLHVEEKAS 98
Score = 61.5 bits (150), Expect = 9e-12
Identities = 24/92 (26%), Positives = 34/92 (36%), Gaps = 10/92 (10%)
Query: 587 PSFKKRPLESETYAGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGN---L 643
+ K PLE + G +V + C A P W KD I + + G L
Sbjct: 9 AAIIK-PLEDQW-VAPGEDVELRCELSRAGTP-VHWLKDRKAIRKSQKYDVVCEGTMAML 65
Query: 644 LISPVSRDDSGIYSCTATNVHGMDESKGRLIV 675
+I S D+G Y+C +S L V
Sbjct: 66 VIRGASLKDAGEYTCEVEA----SKSTASLHV 93
Score = 56.2 bits (136), Expect = 8e-10
Identities = 18/98 (18%), Positives = 32/98 (32%), Gaps = 17/98 (17%)
Query: 489 PNFTIPLTDKHMDNQADLTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQDN- 547
PL D+ + D+ CE W ++ + + +Y +
Sbjct: 9 AAIIKPLEDQWVAPGEDVELRCELSR-AGTPVHWLKDRK-------AIRKSQKYDVVCEG 60
Query: 548 ---VLTIRYLNPERDPAMYQCRAKNQLKTRYSSAQLRV 582
+L IR + + D Y C + S+A L V
Sbjct: 61 TMAMLVIRGASLK-DAGEYTCEVEASK----STASLHV 93
Score = 45.8 bits (109), Expect = 3e-06
Identities = 24/107 (22%), Positives = 42/107 (39%), Gaps = 25/107 (23%)
Query: 686 PPKIT-------IAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINI- 737
P I +A +++LRC + V W + I ++ ++
Sbjct: 8 PAAIIKPLEDQWVAPGEDVELRCEL-SRAGTPV--HWLKDRKAI-------RKSQKYDVV 57
Query: 738 -DGGL--LEITNASFADAGEYECVVKSTVGKISTKTTVIVEGPPGLP 781
+G + L I AS DAGEY C V+++ + ++ VE P
Sbjct: 58 CEGTMAMLVIRGASLKDAGEYTCEVEAS----KSTASLHVEEKASGP 100
Score = 45.0 bits (107), Expect = 6e-06
Identities = 16/95 (16%), Positives = 24/95 (25%), Gaps = 17/95 (17%)
Query: 190 PYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDK 249
IK D + + L C P W K+ I
Sbjct: 9 AAIIKPLEDQWVAPGED-----VELRCELSRAGTP-VHWLKDR--------KAIRKSQKY 54
Query: 250 RFTLSGGN--LIINDPRQVEDRGSYHCKASNKFGS 282
G L+I ++D G Y C+ +
Sbjct: 55 DVVCEGTMAMLVIRGA-SLKDAGEYTCEVEASKST 88
>1iam_A ICAM-1, CD54, intercellular adhesion molecule-1; rhinovirus
receptor, cell adhesion, integrin ligand, glycopr LFA-1
ligand, immunoglobulin fold; HET: NAG; 2.10A {Homo
sapiens} SCOP: b.1.1.3 b.1.1.4 PDB: 1ic1_A* 1d3l_A
1d3e_I 1d3i_I 3tcx_A
Length = 185
Score = 64.4 bits (156), Expect = 7e-12
Identities = 25/174 (14%), Positives = 50/174 (28%), Gaps = 16/174 (9%)
Query: 407 FPEAP--KAGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYFENFNRILTIPNVKVEDQG 464
P G V + C +PLP+ N V++
Sbjct: 5 SPSKVILPRGGSVLVTCSTSCDQPKLLGIE---TPLPKKELLLPGNNRKVYELSNVQEDS 61
Query: 465 EYICRASNDRSALESSVTISIQAEPNF-TIPLTDKHMDNQADLTWTCEAFGV---PDVTY 520
+ +C ++ + +++ P + LT C+ G +T
Sbjct: 62 QPMCYSNCPDGQSTAKTFLTVYWTPERVELAPLPSWQPVGKQLTLRCQVEGGAPRAQLTV 121
Query: 521 SWFRNGELLNSETLPLEDQDRYFIQDNVLTIRYLNPERDPAMYQCRAKNQLKTR 574
R + L E E + + +R + A + CR + L+ +
Sbjct: 122 VLLRGEKELKREPAVGEPAEVTTT----VLVR---RDHHGAQFSCRTELDLRPQ 168
Score = 35.1 bits (80), Expect = 0.053
Identities = 12/103 (11%), Positives = 23/103 (22%), Gaps = 5/103 (4%)
Query: 563 YQCRAKNQLKTRYSSAQLRVLTLKPSFKKRPLESETYAGEGGNVTIFC---NPEAAPKPK 619
C + + L V + PL S G+ +T+ C +
Sbjct: 63 PMCYSNCPDGQSTAKTFLTVYWTPERVELAPLPSWQPVGK--QLTLRCQVEGGAPRAQLT 120
Query: 620 FVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTATN 662
V + + + +SC
Sbjct: 121 VVLLRGEKELKREPAVGEPAEVTTTVLVRRDHHGAQFSCRTEL 163
>1gxe_A Myosin binding protein C, cardiac-type; cytoskeleton, muscle, IGI,
thick filament, immunoglobulin domain; NMR {Homo
sapiens} SCOP: b.1.1.4
Length = 139
Score = 62.8 bits (152), Expect = 7e-12
Identities = 15/107 (14%), Positives = 32/107 (29%), Gaps = 32/107 (29%)
Query: 602 EGGNVTIFCNPEAAPKPKFVWKKDG-----------------------------NIIGSG 632
G + + P P +W+K + +
Sbjct: 32 AGNKLRLDVPISGDPAPTVIWQKAITQGNKAPARPAPDAPEDTGDSDEWVFDKKLLCETE 91
Query: 633 GRRKIFENGN---LLISPVSRDDSGIYSCTATNVHGMDESKGRLIVL 676
GR ++ + + ++D G+Y+ T N G D+ + V+
Sbjct: 92 GRVRVETTKDRSIFTVEGAEKEDEGVYTVTVKNPVGEDQVNLTVKVI 138
Score = 53.6 bits (128), Expect = 2e-08
Identities = 18/108 (16%), Positives = 33/108 (30%), Gaps = 35/108 (32%)
Query: 412 KAGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYFENFNR-------------------- 451
AG+K+RL+ G P P+ W + + + +
Sbjct: 31 VAGNKLRLDVPISGDPAPTVIWQKAITQGNKAPARPAPDAPEDTGDSDEWVFDKKLLCET 90
Query: 452 -------------ILTIPNVKVEDQGEYICRASNDRSALESSVTISIQ 486
I T+ + ED+G Y N E V ++++
Sbjct: 91 EGRVRVETTKDRSIFTVEGAEKEDEGVYTVTVKN--PVGEDQVNLTVK 136
Score = 45.1 bits (106), Expect = 1e-05
Identities = 14/96 (14%), Positives = 21/96 (21%), Gaps = 24/96 (25%)
Query: 210 NDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGN------------ 257
N + L G P P+ W K ++ A +
Sbjct: 34 NKLRLDVPISGDPAPTVIWQKAITQGNKAPARPAPDAPEDTGDSDEWVFDKKLLCETEGR 93
Query: 258 -----------LIINDPRQVEDRGSYHCKASNKFGS 282
+ + ED G Y N G
Sbjct: 94 VRVETTKDRSIFTVEGAEK-EDEGVYTVTVKNPVGE 128
Score = 43.6 bits (102), Expect = 4e-05
Identities = 17/92 (18%), Positives = 29/92 (31%), Gaps = 4/92 (4%)
Query: 687 PKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINI----DGGLL 742
P T+ + + A D + + + L + + D +
Sbjct: 46 PAPTVIWQKAITQGNKAPARPAPDAPEDTGDSDEWVFDKKLLCETEGRVRVETTKDRSIF 105
Query: 743 EITNASFADAGEYECVVKSTVGKISTKTTVIV 774
+ A D G Y VK+ VG+ TV V
Sbjct: 106 TVEGAEKEDEGVYTVTVKNPVGEDQVNLTVKV 137
Score = 43.2 bits (101), Expect = 6e-05
Identities = 19/129 (14%), Positives = 33/129 (25%), Gaps = 32/129 (24%)
Query: 486 QAEPNFTIPLTDKHMDNQ-----ADLTWTCEAFGVPDVTYSWFRNGELLNSET------- 533
Q P + + D L G P T W + N
Sbjct: 11 QEPPKIHLDCPGRIPDTIVVVAGNKLRLDVPISGDPAPTVIWQKAITQGNKAPARPAPDA 70
Query: 534 ---------------LPLEDQDRYFIQDN----VLTIRYLNPERDPAMYQCRAKNQLKTR 574
L E + R ++ + T+ E D +Y KN +
Sbjct: 71 PEDTGDSDEWVFDKKLLCETEGRVRVETTKDRSIFTVEGAEKE-DEGVYTVTVKNPVGED 129
Query: 575 YSSAQLRVL 583
+ ++V+
Sbjct: 130 QVNLTVKVI 138
>1wmz_A Lectin CEL-I, N-acetyl-D-galactosamine-specific C-type; C-type
lectin, N-acetylgalactosamine, invertebrate, sugar
binding protein; HET: NGA A2G; 1.70A {Cucumaria
echinata} SCOP: d.169.1.1 PDB: 1wmy_A*
Length = 140
Score = 62.9 bits (153), Expect = 7e-12
Identities = 23/93 (24%), Positives = 38/93 (40%), Gaps = 9/93 (9%)
Query: 28 RCPQHWVQYRDSCYRFVKSPLKTRNDAKLNCKSLD-------SDLANVNDADEHGFIMYQ 80
+CP W D CYRF + T +A C S SDL +V+ A E ++
Sbjct: 2 QCPTDWEAEGDHCYRFFNTL-TTWENAHHECVSYSCSTLNVRSDLVSVHSAAEQAYVFNY 60
Query: 81 LFWQDPQRRKWYFGGT-QQSPNLWVNEDGTNLN 112
D Q + + G + + ++ DG+ +
Sbjct: 61 WRGIDSQAGQLWIGLYDKYNEGDFIWTDGSKVG 93
>2dav_A SLOW MYBP-C, myosin-binding protein C, SLOW-type; IG domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
b.1.1.4
Length = 126
Score = 62.7 bits (152), Expect = 7e-12
Identities = 19/109 (17%), Positives = 31/109 (28%), Gaps = 17/109 (15%)
Query: 587 PSFKKRPLESETYAGEGGNVTIFCNPEAAP---KPKFVWKKDGNI---IGSGGRRKIFEN 640
F ++P G ++T +A KP W K + +G ++ E
Sbjct: 8 ILFIEKP--QGGTVKVGEDITFIAKVKAEDLLRKPTIKWFKGKWMDLASKAGKHLQLKET 65
Query: 641 GN---------LLISPVSRDDSGIYSCTATNVHGMDESKGRLIVLHGPS 680
+ I + +G Y C T D L V
Sbjct: 66 FERHSRVYTFEMQIIKAKDNFAGNYRCEVTYKDKFDSCSFDLEVHESTG 114
Score = 59.6 bits (144), Expect = 8e-11
Identities = 20/108 (18%), Positives = 37/108 (34%), Gaps = 13/108 (12%)
Query: 189 GPYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPN---PSYEWFKEDYVQDRLVANL--- 242
G FI++P + + DIT P+ +WFK ++ A
Sbjct: 7 GILFIEKPQGGTVKVGE-----DITFIAKVKAEDLLRKPTIKWFKGKWMDLASKAGKHLQ 61
Query: 243 IDPLSDKRFTLSGGNLIINDPRQVEDRGSYHCKASNKFGSIISESVQL 290
+ ++ + + I + G+Y C+ + K S S L
Sbjct: 62 LKETFERHSRVYTFEMQIIKA-KDNFAGNYRCEVTYKDKF-DSCSFDL 107
Score = 50.8 bits (121), Expect = 1e-07
Identities = 19/107 (17%), Positives = 31/107 (28%), Gaps = 7/107 (6%)
Query: 686 PPKITIAAHRNLQLRCSAHTEELLDVAYI-WTHNGVRI------GNMDLNELETPNINID 738
P T+ ++ E+LL I W ++ L E + +
Sbjct: 14 PQGGTVKVGEDITFIAKVKAEDLLRKPTIKWFKGKWMDLASKAGKHLQLKETFERHSRVY 73
Query: 739 GGLLEITNASFADAGEYECVVKSTVGKISTKTTVIVEGPPGLPGGVQ 785
++I A AG Y C V S + V G +
Sbjct: 74 TFEMQIIKAKDNFAGNYRCEVTYKDKFDSCSFDLEVHESTGTTPNID 120
Score = 49.6 bits (118), Expect = 2e-07
Identities = 15/94 (15%), Positives = 26/94 (27%), Gaps = 16/94 (17%)
Query: 412 KAGDKVRLECVAFGYPV---PSYNWTR---------RGSPLPRNAYFENFNRI----LTI 455
K G+ + + P+ W + G L FE +R+ + I
Sbjct: 20 KVGEDITFIAKVKAEDLLRKPTIKWFKGKWMDLASKAGKHLQLKETFERHSRVYTFEMQI 79
Query: 456 PNVKVEDQGEYICRASNDRSALESSVTISIQAEP 489
K G Y C + S + +
Sbjct: 80 IKAKDNFAGNYRCEVTYKDKFDSCSFDLEVHEST 113
Score = 46.9 bits (111), Expect = 2e-06
Identities = 16/109 (14%), Positives = 32/109 (29%), Gaps = 10/109 (9%)
Query: 489 PNFTIPLTDKHMDNQADLTWTCEAFGVPDV---TYSWFRNG--ELLNSETLPLEDQDRYF 543
F + D+T+ + + T WF+ +L + L+ ++ +
Sbjct: 8 ILFIEKPQGGTVKVGEDITFIAKVKAEDLLRKPTIKWFKGKWMDLASKAGKHLQLKETFE 67
Query: 544 IQDNV----LTIRYLNPERDPAMYQCRAKNQLKTRYSSAQLRVLTLKPS 588
V + I Y+C + K S L V +
Sbjct: 68 RHSRVYTFEMQIIKAKDN-FAGNYRCEVTYKDKFDSCSFDLEVHESTGT 115
>3bx4_B Aggretin beta chain; toxin; 1.70A {Agkistrodon rhodostoma} PDB:
2vrp_B
Length = 146
Score = 63.2 bits (154), Expect = 7e-12
Identities = 31/108 (28%), Positives = 41/108 (37%), Gaps = 6/108 (5%)
Query: 9 FIFVSFHS-VFSQTIDELELRCPQHWVQYRDSCYRFVKSPLKTRNDAKLNCKSLD--SDL 65
FIFVSF V ++ CP W Y CY+ P K DA+ CK S L
Sbjct: 4 FIFVSFGLLVVFLSLSGTGADCPSGWSSYEGHCYKPFNEP-KNWADAERFCKLQPKHSHL 62
Query: 66 ANVNDADEHGFIMYQLFWQDPQRRKWYFGGT-QQSPNLWVNEDGTNLN 112
+ A+E F++ + W G + W DG LN
Sbjct: 63 VSFQSAEEADFVVKLTRPRLKANLVW-MGLSNIWHGCNWQWSDGARLN 109
>3gpr_D Rhodocetin subunit delta; disulfide bond, lectin, secreted, toxin,
cell adhesion; 3.20A {Calloselasma rhodostoma}
Length = 124
Score = 62.5 bits (152), Expect = 7e-12
Identities = 23/87 (26%), Positives = 32/87 (36%), Gaps = 5/87 (5%)
Query: 29 CPQHWVQYRDSCYRFVKSPLKTRNDAKLNCKSLD--SDLANVNDADEHGFIMYQLFWQDP 86
CP HW Y CYR KT DA+ C + S LA+++ +E F+
Sbjct: 1 CPLHWSSYNGYCYRVFSEL-KTWEDAESFCYAQHKGSRLASIHSREEEAFVGKLASQTLK 59
Query: 87 QRRKWYFGGT-QQSPNLWVNEDGTNLN 112
W G + W D L+
Sbjct: 60 YTSMW-LGLNNAWAACKWEWSDDAKLD 85
>1umr_C Convulxin beta, CVX beta; lectin, C-type lectin, platelet,
sugar-binding protein, activator, snake venom; 2.40A
{Crotalus durissus terrificus} SCOP: d.169.1.1 PDB:
1uos_B
Length = 125
Score = 62.4 bits (152), Expect = 8e-12
Identities = 22/87 (25%), Positives = 30/87 (34%), Gaps = 5/87 (5%)
Query: 29 CPQHWVQYRDSCYRFVKSPLKTRNDAKLNCKS--LDSDLANVNDADEHGFIMYQLFWQDP 86
CP HW Y CY+ K T DA+ C S L + + +E F++
Sbjct: 4 CPSHWSSYDRYCYKVFKQE-MTWADAEKFCTQQHTGSHLVSFHSTEEVDFVVKMTHQSLK 62
Query: 87 QRRKWYFGGT-QQSPNLWVNEDGTNLN 112
W G + W DGT
Sbjct: 63 STFFW-IGANNIWNKCNWQWSDGTKPE 88
>1tn3_A Tetranectin; plasminogen binding, kringle 4, C-type lectin,
carbohydrate recognition domain; 2.00A {Homo sapiens}
SCOP: d.169.1.1 PDB: 1rjh_A 3l9j_C
Length = 137
Score = 62.8 bits (153), Expect = 9e-12
Identities = 15/89 (16%), Positives = 30/89 (33%), Gaps = 3/89 (3%)
Query: 25 LELRCPQHWVQYRDSCYRFVKSPLKTRNDAKLNCKSLDSDLANVNDADEHGFIMYQLFWQ 84
L+ C + + C+ KT ++A +C S L+ E+ + L
Sbjct: 2 LQTVCLKGT-KVHMKCFLAFTQT-KTFHEASEDCISRGGTLSTPQTGSENDALYEYLRQS 59
Query: 85 DPQRRKWYFGGT-QQSPNLWVNEDGTNLN 112
+ + G + WV+ G +
Sbjct: 60 VGNEAEIWLGLNDMAAEGTWVDMTGARIA 88
>2edk_A Myosin-binding protein C, fast-type; IG fold, fast MYBP-C,
C-protein, skeletal muscle fast- isoform, MYBPCF,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 101
Score = 61.6 bits (150), Expect = 9e-12
Identities = 20/97 (20%), Positives = 35/97 (36%), Gaps = 16/97 (16%)
Query: 587 PSFKKRPLESETYAGEGGNVTIFCNPEAA-PKPKFVWKKDGNII----GSGGRRKIFENG 641
PLE + G V + E + + +W K+G + R + ++G
Sbjct: 9 VLIVT-PLEDQQ-VFVGDRVEMAV--EVSEEGAQVMWMKNGVELTREDSFKARYRFKKDG 64
Query: 642 N---LLISPVSRDDSGIYSCTATNVHGMDESKGRLIV 675
L+ S V ++D G Y + + LIV
Sbjct: 65 KRHILIFSDVVQEDRGRYQVITNG----GQCEAELIV 97
Score = 59.7 bits (145), Expect = 4e-11
Identities = 15/70 (21%), Positives = 23/70 (32%), Gaps = 9/70 (12%)
Query: 414 GDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYF--------ENFNRILTIPNVKVEDQGE 465
GD+V + W + G L R F + IL +V ED+G
Sbjct: 23 GDRVEMAVEV-SEEGAQVMWMKNGVELTREDSFKARYRFKKDGKRHILIFSDVVQEDRGR 81
Query: 466 YICRASNDRS 475
Y + +
Sbjct: 82 YQVITNGGQC 91
Score = 53.9 bits (130), Expect = 4e-09
Identities = 19/98 (19%), Positives = 29/98 (29%), Gaps = 13/98 (13%)
Query: 489 PNFTIPLTDKHMDNQADLTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQDN- 547
PL D+ + + E W +NG L E + RY + +
Sbjct: 9 VLIVTPLEDQQVFVGDRVEMAVEV-SEEGAQVMWMKNGVELTREDSF---KARYRFKKDG 64
Query: 548 ---VLTIRYLNPERDPAMYQCRAKNQLKTRYSSAQLRV 582
+L + E D YQ A+L V
Sbjct: 65 KRHILIFSDVVQE-DRGRYQVITNGG----QCEAELIV 97
Score = 46.6 bits (111), Expect = 1e-06
Identities = 17/104 (16%), Positives = 30/104 (28%), Gaps = 17/104 (16%)
Query: 683 EQLPPKI-------TIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNI 735
P I + +++ E +W NGV + D +
Sbjct: 5 SSGPVLIVTPLEDQQVFVGDRVEMAVEVSEE---GAQVMWMKNGVELTREDSFKARY-RF 60
Query: 736 NIDGGL--LEITNASFADAGEYECVVKSTVGKISTKTTVIVEGP 777
DG L ++ D G Y+ + + +IVE
Sbjct: 61 KKDGKRHILIFSDVVQEDRGRYQVI----TNGGQCEAELIVEEK 100
Score = 42.3 bits (100), Expect = 4e-05
Identities = 15/95 (15%), Positives = 24/95 (25%), Gaps = 13/95 (13%)
Query: 190 PYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDK 249
+ D + R + ++ W K + +
Sbjct: 9 VLIVTPLEDQQVFVGDR-----VEMAVEVSE-EGAQVMWMKNG----VELTREDSFKARY 58
Query: 250 RFTLSGGN--LIINDPRQVEDRGSYHCKASNKFGS 282
RF G LI +D EDRG Y +
Sbjct: 59 RFKKDGKRHILIFSDV-VQEDRGRYQVITNGGQCE 92
>2edy_A Receptor-type tyrosine-protein phosphatase F; LAR protein,
leukocyte antigen related, structural genomics, NPPSFA;
NMR {Homo sapiens}
Length = 103
Score = 61.6 bits (150), Expect = 9e-12
Identities = 21/100 (21%), Positives = 37/100 (37%), Gaps = 10/100 (10%)
Query: 880 TPADKPYQAPSRIGGGGGKIGDLSISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETLK 939
+ + P P + G ++W+P ++N I Y + +R N + L+
Sbjct: 3 SGSSGPSGFPQNLHVTGLTTSTTELAWDPPVLAERNGRIISYTVVFRDINS----QQELQ 58
Query: 940 EYGNVGIAVVR--IPSEFYYTEYEVKVQAINDVGPGPESE 977
+ P T Y++KV+A G GP S
Sbjct: 59 NITTDTRFTLTGLKP----DTTYDIKVRAWTSKGSGPLSP 94
Score = 50.8 bits (122), Expect = 5e-08
Identities = 23/103 (22%), Positives = 35/103 (33%), Gaps = 16/103 (15%)
Query: 775 EGPPGLPGGVQVVEVHKTSATIQWT---DGATNGRPITHYKIIARTNWNSTWFNVSEHVI 831
GP G P + V + ++ + W NGR I Y ++ R +
Sbjct: 6 SGPSGFPQNLHVTGLTTSTTELAWDPPVLAERNGR-IISYTVVFRDINSQQELQNI---- 60
Query: 832 GKEVDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSP 874
T ++ L P +TY+ KV A G G S
Sbjct: 61 -------TTDTRFTLTG-LKPDTTYDIKVRAWTSKGSGPLSPS 95
>1bqu_A Protein (GP130); cytokine receptor, glycoprotein 130, interleukine
6 R beta subunit, signaling protein; 2.00A {Homo
sapiens} SCOP: b.1.2.1 b.1.2.1 PDB: 1pvh_A 1bj8_A
Length = 215
Score = 64.6 bits (157), Expect = 9e-12
Identities = 28/204 (13%), Positives = 64/204 (31%), Gaps = 19/204 (9%)
Query: 777 PPGLPGGVQVVEVHKTSATIQWTDGATNGRPITHYKIIARTNWNSTWFNVSEHVIGKEVD 836
PP P + + +W G T++ + + + ++
Sbjct: 7 PPEKPKNLSCIVNEGKKMRCEWDGG-RETHLETNFTLKSEWATHKFADCKAKR------- 58
Query: 837 RYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPSPQYNTPADKPYQAPS---RIG 893
+++ V + E V A N LG + P K P +
Sbjct: 59 --DTPTSCTVDYSTVYFVNIEVWVEAENALG---KVTSDHINFDPVYKVKPNPPHNLSVI 113
Query: 894 GGGGKIGDLSISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETLKEYGNVGIAVVRIPS 953
L ++W ++ + Y I +R K+ + + ++ + +
Sbjct: 114 NSEELSSILKLTWTNPSI--KSVIILKYNIQYRTKDASTWSQIPPEDT-ASTRSSFTVQD 170
Query: 954 EFYYTEYEVKVQAINDVGPGPESE 977
+TEY +++ + + G G S+
Sbjct: 171 LKPFTEYVFRIRCMKEDGKGYWSD 194
Score = 56.5 bits (136), Expect = 6e-09
Identities = 32/140 (22%), Positives = 59/140 (42%), Gaps = 14/140 (10%)
Query: 758 VVKSTVGKISTKT---TVIVEGPPGLPGGVQV--VEVHKTSATIQWTDGATNGRPITHYK 812
++ +GK+++ + + P P + V E + + WT+ + I Y
Sbjct: 81 EAENALGKVTSDHINFDPVYKVKPNPPHNLSVINSEELSSILKLTWTNPSIKSVIILKYN 140
Query: 813 IIARTNWNSTWFNVSEHVIGKEVDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPS 872
I RT STW + D + R ++++ L P++ Y F++ E G G S
Sbjct: 141 IQYRTKDASTWSQIPP------EDTASTRSSFTVQD-LKPFTEYVFRIRCMKEDGKGYWS 193
Query: 873 SPSPQYN--TPADKPYQAPS 890
S + + T D+P + PS
Sbjct: 194 DWSEEASGITYEDRPSKEPS 213
Score = 28.4 bits (63), Expect = 8.5
Identities = 10/78 (12%), Positives = 22/78 (28%), Gaps = 6/78 (7%)
Query: 901 DLSISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETLKEYGNVGIAVVRIPSEFYYTEY 960
+ W+ ++ + + K + + S Y+
Sbjct: 23 KMRCEWDG---GRETHLETNFTLKSEWATHK---FADCKAKRDTPTSCTVDYSTVYFVNI 76
Query: 961 EVKVQAINDVGPGPESEV 978
EV V+A N +G +
Sbjct: 77 EVWVEAENALGKVTSDHI 94
>3k2m_C Monobody HA4; engineered binding protein, antibody mimic,
protein-protein SH2 domain, ATP-binding, phosphoprotein;
1.75A {Homo sapiens} PDB: 3uyo_D 1ttf_A 1ttg_A 3rzw_A
1fna_A
Length = 101
Score = 61.3 bits (149), Expect = 1e-11
Identities = 22/100 (22%), Positives = 33/100 (33%), Gaps = 10/100 (10%)
Query: 777 PPGLPGGVQVVEVHKTSATIQWTDGATNGRPITHYKIIARTNWNSTWFNVSEHVIGKEVD 836
+P ++VV TS I W ++ + +Y+I ++ V E +
Sbjct: 4 VSSVPTKLEVVAATPTSLLISWDAPMSSS-SVYYYRITYGETGGNSP--VQEFTVPYSSS 60
Query: 837 RYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPSP 876
T I L P Y V A E G SP
Sbjct: 61 TAT------ISG-LSPGVDYTITVYAWGEDSAGYMFMYSP 93
Score = 39.8 bits (93), Expect = 4e-04
Identities = 14/78 (17%), Positives = 25/78 (32%), Gaps = 10/78 (12%)
Query: 902 LSISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETLKEYGNVGIAVVR--IPSEFYYTE 959
L ISW+ ++ YY+I + + E + A + P +
Sbjct: 21 LLISWDA---PMSSSSVYYYRITYGETGGNSPVQEFTVP-YSSSTATISGLSP----GVD 72
Query: 960 YEVKVQAINDVGPGPESE 977
Y + V A + G
Sbjct: 73 YTITVYAWGEDSAGYMFM 90
>3pbf_A Pulmonary surfactant-associated protein A; collectin, carbohydrate
binding, lectin, mannose, sugar BIND protein; 1.80A
{Rattus norvegicus} PDB: 1r14_A* 1r13_A* 3paq_A* 3par_A
3pak_A
Length = 148
Score = 62.8 bits (153), Expect = 1e-11
Identities = 12/87 (13%), Positives = 26/87 (29%), Gaps = 5/87 (5%)
Query: 27 LRCPQHWVQYRDSCYRFVKSPLKTRNDAKLNCKSLDSDLANVNDADEHGFIMYQLFWQDP 86
L + D + + K C ++A +E+ I +
Sbjct: 25 LSLQGSMLSVGDKVFSTNGQS-VNFDTIKEMCTRAGGNIAVPRTPEENEAIAS--IAKKY 81
Query: 87 QRRKWYFGGT-QQSPNLWVNEDGTNLN 112
+ G Q+P + DG +++
Sbjct: 82 NNYVY-LGMIEDQTPGDFHYLDGASVS 107
>2q7n_A Leukemia inhibitory factor receptor; cytokine cell surface receptor
complex LIFR LIF, cytokine RE cytokine complex; HET: NAG
FUC MAN; 4.00A {Mus musculus}
Length = 488
Score = 67.3 bits (163), Expect = 1e-11
Identities = 42/312 (13%), Positives = 80/312 (25%), Gaps = 32/312 (10%)
Query: 669 SKGRLIVLHGPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLN 728
S + I + P + A N+ + C + T+ + + +
Sbjct: 193 SPLKNISWIRNTETNVFPQDKVVLAGSNMTICCMSPTK---------------VLSGQIG 237
Query: 729 ELETPNINIDGGLLEITNASFADAGEYECVVKSTVGKISTKTTVIVEGPPGLPGGVQVVE 788
P I++ G + I + + + T V PP +P +
Sbjct: 238 NTLRPLIHLYGQTVAIHILNIPVSENSGTNIIFITDDDVYGTVVFAGYPPDVPQKLSCET 297
Query: 789 VHKTSATIQWTDGAT---NGRPITHYKIIARTNWNSTWFNVSEHVIGKEVDRYTGRKEAS 845
W G G T Y + + S F ++ T
Sbjct: 298 HDLKEIICSWNPGRITGLVGPRNTEYTLFESISGKSAVF--------HRIEGLTNETYRL 349
Query: 846 IENVLVPWSTYEFKVIAGNELGYGEPSSPSPQYNTPADKPYQAPSRIGGGGGKIGDLSIS 905
+ + F + N LG + + N P+ + ++ S
Sbjct: 350 GVQMHPGQEIHNFTLTGRNPLG---QAQSAVVINVTERVAPHDPTSLKVKDINSTVVTFS 406
Query: 906 WEPLPREKQNAPNIYYKIFWRKKNDTEFQSETLKEYGNVGIAVVRIPSEFYYTEYEVKVQ 965
W N+ +I K N + V + YT Y +V+
Sbjct: 407 WY--LPGNFTKINLLCQIEICKANSKKEVRNATIRGAEDSTYHVAVDKLNPYTAYTFRVR 464
Query: 966 AINDVGPGPESE 977
+ S
Sbjct: 465 CSSK-TFWKWSR 475
Score = 48.0 bits (113), Expect = 1e-05
Identities = 39/285 (13%), Positives = 84/285 (29%), Gaps = 33/285 (11%)
Query: 602 EGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTAT 661
G N+TI C + +I G+ N+ +S S + I T
Sbjct: 217 AGSNMTICCMSPTKVLSGQIGNTLRPLIHLYGQTVAIHILNIPVSENS--GTNIIFITDD 274
Query: 662 NVHGMDESKGRLIVLHGPSYYEQLPPKITIAAHRNLQLRCS------AHTEELLDVAYIW 715
+V+G G Y +P K++ H ++ CS + Y
Sbjct: 275 DVYGTVVFAG---------YPPDVPQKLSCETHDLKEIICSWNPGRITGLVGPRNTEYTL 325
Query: 716 THNGVRIGNMDLNELETPNINIDGGLLEITNASFADAGEYECVVKSTVGKISTKTTV--- 772
+ + N L + + + ++ +G+ + +
Sbjct: 326 FESISGKSAVFHRIEGLTNETYR---LGVQMHPGQEIHNFTLTGRNPLGQAQSAVVINVT 382
Query: 773 -IVEGPPGLPGGVQVVEVHKTSATIQWTDGATNGRPITHYKIIARTNWNSTWFNVSEHVI 831
V P ++V +++ T T W + +I + +
Sbjct: 383 ERVAPHD--PTSLKVKDINSTVVTFSWYLPGNFTKINLLCQIEICKANSKKEVRNATI-- 438
Query: 832 GKEVDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPSP 876
+++ L P++ Y F+V ++ + + S S
Sbjct: 439 ---RGAEDSTYHVAVDK-LNPYTAYTFRVRCSSK-TFWKWSRWSD 478
Score = 31.5 bits (70), Expect = 1.7
Identities = 18/206 (8%), Positives = 44/206 (21%), Gaps = 28/206 (13%)
Query: 778 PGLPGGVQVVEVHKTSATIQWTDGATNGRPITHYKIIARTNWNSTWFNVSEHVIGKEVDR 837
++ + W P T I + ++S
Sbjct: 4 DDDDKDLKCTTNNMRVWDCTWPAPLGVS-PGTVKDICIKDRFHSCH-------------- 48
Query: 838 YTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPSPQYNTPADKPYQAPSRIG-GGG 896
+ +++ + +E + N + P + P +
Sbjct: 49 --PLETTNVKIPALSPGDHEVTINYLNGFQSKFTLNEKDVSLIP-----ETPEILDLSAD 101
Query: 897 GKIGDLSISWEPLPREKQNAPNIYYKIFWRKKNDT-----EFQSETLKEYGNVGIAVVRI 951
L + W + N ++I + T + L V
Sbjct: 102 FFTSSLLLKWNDRGSALPHPSNATWEIKVLQNPRTEPVALVLLNTMLSGKDTVQHWNWTS 161
Query: 952 PSEFYYTEYEVKVQAINDVGPGPESE 977
+ V ++ D +
Sbjct: 162 DLPLQCATHSVSIRWHIDSPHFSGYK 187
Score = 29.5 bits (65), Expect = 5.6
Identities = 18/174 (10%), Positives = 40/174 (22%), Gaps = 13/174 (7%)
Query: 805 GRPITHYKIIARTNWNSTWFNVSEHVIGKEVDRYTGRKEASIENVLVPWSTYEFKVIAGN 864
G +T + + N +I G+ A + +I
Sbjct: 218 GSNMTICCMSPTKVLSGQIGNTLRPLI-----HLYGQTVAIHILNIPVSENSGTNIIFIT 272
Query: 865 ELGYGEPSSPSPQYNTPADKPYQAPSRIGGGGGKIGDLSISWEPLPREKQNAPNIYYKIF 924
+ A P P ++ + ++ SW P R +
Sbjct: 273 DDDVYGTV-------VFAGYPPDVPQKLSCETHDLKEIICSWNP-GRITGLVGPRNTEYT 324
Query: 925 WRKKNDTEFQSETLKEYGNVGIAVVRIPSEFYYTEYEVKVQAINDVGPGPESEV 978
+ + E + + + + N +G + V
Sbjct: 325 LFESISGKSAVFHRIEGLTNETYRLGVQMHPGQEIHNFTLTGRNPLGQAQSAVV 378
>1jwi_A Bitiscetin; domain swapping, C-type lectin, toxin; 2.00A {Bitis
arietans} SCOP: d.169.1.1 PDB: 1uex_A
Length = 131
Score = 62.0 bits (151), Expect = 1e-11
Identities = 20/89 (22%), Positives = 35/89 (39%), Gaps = 7/89 (7%)
Query: 29 CPQHWVQYRDSCYRFVKSPLKTRNDAKLNCKSLDSDLANVNDADEHGFIMYQLFWQDPQR 88
C W Y+ CY+ K T DA+ C LA+++ +E F+ +L Q +
Sbjct: 4 CLPDWSSYKGHCYKVFKKV-GTWEDAEKFCVENSGHLASIDSKEEADFV-TKLASQTLTK 61
Query: 89 RKWYF--GGTQQSPN---LWVNEDGTNLN 112
+ G +S DG+++
Sbjct: 62 FVYDAWIGLRDESKTQQCSPQWTDGSSVV 90
>3cx2_A Myosin-binding protein C, cardiac-type; protonation states,
actin-binding, cardiomyopathy, cell adhesion, disease
mutation, immunoglobulin domain; 1.30A {Homo sapiens}
PDB: 2v6h_A 2avg_A
Length = 108
Score = 61.6 bits (149), Expect = 1e-11
Identities = 20/104 (19%), Positives = 32/104 (30%), Gaps = 17/104 (16%)
Query: 587 PSFKKRPLESETYAGEGGNVTIFCNPEAAP---KPKFVWKKDGNI---IGSGGRRKIFEN 640
F RP + GG++T A P W K + G ++ ++
Sbjct: 5 GLFVMRP--QDGEVTVGGSITFSARVAGASLLKPPVVKWFKGKWVDLSSKVGQHLQLHDS 62
Query: 641 GN---------LLISPVSRDDSGIYSCTATNVHGMDESKGRLIV 675
+ L I+ +G Y C + D S L V
Sbjct: 63 YDRASKVYLFELHITDAQPAFTGSYRCEVSTKDKFDCSNFNLTV 106
Score = 53.9 bits (129), Expect = 5e-09
Identities = 23/100 (23%), Positives = 32/100 (32%), Gaps = 12/100 (12%)
Query: 190 PYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPN---PSYEWFKEDYVQDRLVAN---LI 243
F+ +P D + IT S G P +WFK +V +
Sbjct: 5 GLFVMRPQDGEVTVGG-----SITFSARVAGASLLKPPVVKWFKGKWVDLSSKVGQHLQL 59
Query: 244 DPLSDKRFTLSGGNLIINDPRQVEDRGSYHCKASNKFGSI 283
D+ + L I D Q GSY C+ S K
Sbjct: 60 HDSYDRASKVYLFELHITDA-QPAFTGSYRCEVSTKDKFD 98
Score = 47.3 bits (112), Expect = 1e-06
Identities = 15/104 (14%), Positives = 31/104 (29%), Gaps = 21/104 (20%)
Query: 404 PKTFPEAPK-----AGDKVRLECVAFGYPV---PSYNWTR---------RGSPLPRNAYF 446
F P+ G + G + P W + G L + +
Sbjct: 4 IGLFVMRPQDGEVTVGGSITFSARVAGASLLKPPVVKWFKGKWVDLSSKVGQHLQLHDSY 63
Query: 447 ENFNRI----LTIPNVKVEDQGEYICRASNDRSALESSVTISIQ 486
+ +++ L I + + G Y C S S+ +++
Sbjct: 64 DRASKVYLFELHITDAQPAFTGSYRCEVSTKDKFDCSNFNLTVH 107
Score = 45.4 bits (107), Expect = 6e-06
Identities = 15/96 (15%), Positives = 28/96 (29%), Gaps = 7/96 (7%)
Query: 686 PPKITIAAHRNLQLRCSAHTEELLDVAYI-WTHNGVRI------GNMDLNELETPNINID 738
P + ++ LL + W ++ L++ +
Sbjct: 11 PQDGEVTVGGSITFSARVAGASLLKPPVVKWFKGKWVDLSSKVGQHLQLHDSYDRASKVY 70
Query: 739 GGLLEITNASFADAGEYECVVKSTVGKISTKTTVIV 774
L IT+A A G Y C V + + + V
Sbjct: 71 LFELHITDAQPAFTGSYRCEVSTKDKFDCSNFNLTV 106
Score = 39.2 bits (91), Expect = 7e-04
Identities = 20/101 (19%), Positives = 33/101 (32%), Gaps = 10/101 (9%)
Query: 491 FTIPLTDKHMDNQADLTWTCEAFGVPDV---TYSWFRNG--ELLNSETLPLEDQDRYFIQ 545
F + D + +T++ G + WF+ +L + L+ D Y
Sbjct: 7 FVMRPQDGEVTVGGSITFSARVAGASLLKPPVVKWFKGKWVDLSSKVGQHLQLHDSYDRA 66
Query: 546 DNV----LTIRYLNPERDPAMYQCRAKNQLKTRYSSAQLRV 582
V L I P Y+C + K S+ L V
Sbjct: 67 SKVYLFELHITDAQPA-FTGSYRCEVSTKDKFDCSNFNLTV 106
>1j34_B Coagulation factor IX-binding protein B chain; magnesium ION,
calcium ION, GLA domain, protein binding/blood clotting
complex; HET: CGU; 1.55A {Trimeresurus flavoviridis}
SCOP: d.169.1.1 PDB: 1bj3_B 1ixx_B* 1j35_B* 1x2t_B*
1x2w_B 1wt9_B 1iod_B 1y17_B
Length = 123
Score = 61.6 bits (150), Expect = 1e-11
Identities = 19/87 (21%), Positives = 30/87 (34%), Gaps = 5/87 (5%)
Query: 29 CPQHWVQYRDSCYRFVKSPLKTRNDAKLNCKSLDS--DLANVNDADEHGFIMYQLFWQDP 86
CP W Y CY+ P K DA+ C + L + ++E F++ F
Sbjct: 2 CPSDWSSYEGHCYKPFSEP-KNWADAENFCTQQHAGGHLVSFQSSEEADFVVKLAFQTFG 60
Query: 87 QRRKWYFGGT-QQSPNLWVNEDGTNLN 112
W G + + W + L
Sbjct: 61 HSIFW-MGLSNVWNQCNWQWSNAAMLR 86
>2kv3_A Regenerating islet-derived protein 4; GISP, C-type lectin, REG IV,
disulfide bond, glycoPro lectin, secreted, sugar binding
protein; NMR {Homo sapiens}
Length = 131
Score = 62.0 bits (151), Expect = 1e-11
Identities = 19/87 (21%), Positives = 33/87 (37%), Gaps = 5/87 (5%)
Query: 29 CPQHWVQYRDSCYRFVKSPLKTRNDAKLNCKSLD--SDLANVNDADEHGFIMYQLFWQDP 86
C W ++ +CY + + + +DA+L C+S + LA++ E I +
Sbjct: 3 CAPGWFYHKSNCYGYFRKL-RNWSDAELECQSYGNGAHLASILSLKEASTIAEYISGYQR 61
Query: 87 QRRKWYFGGT-QQSPNLWVNEDGTNLN 112
+ W G Q W DG
Sbjct: 62 SQSIW-IGLHDPQKRQQWQWIDGAMYL 87
>1htn_A Tetranectin; plasminogen binding, kringle 4, alpha-helical coiled
coil, C-type lectin, carbohydrate recognition domain;
2.80A {Homo sapiens} SCOP: d.169.1.1 h.1.1.1
Length = 182
Score = 63.3 bits (154), Expect = 1e-11
Identities = 14/85 (16%), Positives = 28/85 (32%), Gaps = 3/85 (3%)
Query: 29 CPQHWVQYRDSCYRFVKSPLKTRNDAKLNCKSLDSDLANVNDADEHGFIMYQLFWQDPQR 88
C + + C+ KT ++A +C S L+ E+ + L
Sbjct: 51 CLKGT-KVHMKCFLAFTQT-KTFHEASEDCISRGGTLSTPQTGSENDALYEYLRQSVGNE 108
Query: 89 RKWYFGGT-QQSPNLWVNEDGTNLN 112
+ + G + WV+ G +
Sbjct: 109 AEIWLGLNDMAAEGTWVDMTGARIA 133
>1c3a_B Flavocetin-A: beta subunit; C-type lectin-like domains, membrane
protein; 2.50A {Trimeresurus flavoviridis} SCOP:
d.169.1.1 PDB: 1v4l_B
Length = 125
Score = 61.7 bits (150), Expect = 1e-11
Identities = 20/87 (22%), Positives = 33/87 (37%), Gaps = 5/87 (5%)
Query: 29 CPQHWVQYRDSCYRFVKSPLKTRNDAKLNCKSLD--SDLANVNDADEHGFIMYQLFWQDP 86
CP W Y + CY+ + DA+ C S L + + ++E F+ + F
Sbjct: 4 CPLGWSSYDEHCYQVFQQK-MNWEDAEKFCTQQHKGSHLVSFHSSEEVDFVTSKTFPILK 62
Query: 87 QRRKWYFGGT-QQSPNLWVNEDGTNLN 112
W G + + DGT L+
Sbjct: 63 YDFVW-IGLSNVWNECTKEWSDGTKLD 88
>3p2t_A Leukocyte immunoglobulin-like receptor subfamily 4; LILR, IG,
inhibitory receptor, disulfide, immune system; 1.70A
{Homo sapiens}
Length = 196
Score = 63.7 bits (155), Expect = 2e-11
Identities = 31/190 (16%), Positives = 62/190 (32%), Gaps = 27/190 (14%)
Query: 484 SIQAEPNFTIPLTDKHMDNQADLTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYF 543
++ AEP I + +T C+ + Y + P + Q+
Sbjct: 7 TLWAEPGSVISWGNS-------VTIWCQG-TLEAREYRLDKEES-----PAPWDRQNPLE 53
Query: 544 IQDNV-LTIRYLNPERDPAMYQCRAKNQLKTRYSSAQLRVLTL----KPSFKKRPLESET 598
++ +I + + Y+C ++ + S L ++ KP+ P
Sbjct: 54 PKNKARFSIPSMTED-YAGRYRCYYRSPVGWSQPSDPLELVMTGAYSKPTLSALP---SP 109
Query: 599 YAGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENG----NLLISPVSRDDSG 654
G +VT+ C + P F+ K+ R +SPV+ G
Sbjct: 110 LVTSGKSVTLLCQSRS-PMDTFLLCKERAAHPLLCLRSEHGAQQHQAEFPMSPVTSVHGG 168
Query: 655 IYSCTATNVH 664
Y C +++
Sbjct: 169 TYRCFSSHGF 178
Score = 59.8 bits (145), Expect = 3e-10
Identities = 21/161 (13%), Positives = 51/161 (31%), Gaps = 11/161 (6%)
Query: 602 EGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFE--NGNLLISPVSRDDSGIYSCT 659
G +VTI+C ++ K+ + + + I ++ D +G Y C
Sbjct: 18 WGNSVTIWCQG-TLEAREYRLDKEESPAPWDRQNPLEPKNKARFSIPSMTEDYAGRYRCY 76
Query: 660 ATNVHGMDESKGRLIVLHGPSYYE---QLPPKITIAAHRNLQLRCSAHTEELLDVAYIWT 716
+ G + L ++ +Y + P + + +++ L C + + ++
Sbjct: 77 YRSPVGWSQPSDPLELVMTGAYSKPTLSALPSPLVTSGKSVTLLCQSRSP---MDTFLLC 133
Query: 717 HNGVRIGNMDLNELETPNINIDGGLLEITNASFADAGEYEC 757
+ L ++ + G Y C
Sbjct: 134 KERAAHPLLCLR--SEHGAQQHQAEFPMSPVTSVHGGTYRC 172
Score = 46.4 bits (110), Expect = 9e-06
Identities = 24/160 (15%), Positives = 50/160 (31%), Gaps = 12/160 (7%)
Query: 414 GDKVRLECVAFGYPVPSYNWTRRGSPLP---RNAYFENFNRILTIPNVKVEDQGEYICRA 470
G+ V + C Y + SP P +N +IP++ + G Y C
Sbjct: 19 GNSVTIWCQG-TLEAREYRLDKEESPAPWDRQNPLEPKNKARFSIPSMTEDYAGRYRCYY 77
Query: 471 SNDRSALESSVTISIQAEPNFTIP----LTDKHMDNQADLTWTCEAFGVPDVTYSWFRNG 526
+ + S + + ++ P L + + +T C++ P T+ +
Sbjct: 78 RSPVGWSQPSDPLELVMTGAYSKPTLSALPSPLVTSGKSVTLLCQS-RSPMDTFLLCKER 136
Query: 527 ELLNSETLPLEDQDRYFIQDNVLTIRYLNPERDPAMYQCR 566
L E + + + + Y+C
Sbjct: 137 AAHPLLCLRSEHGAQQHQAE--FPMSPVTSV-HGGTYRCF 173
Score = 44.8 bits (106), Expect = 3e-05
Identities = 25/185 (13%), Positives = 51/185 (27%), Gaps = 30/185 (16%)
Query: 317 CDPPTNYPGVNYYWARDYFPNFVEEDKRVFVSYDGALYFSALEQIDAGNYSCNVQ----- 371
C Y ++ P + + ++ + AG Y C +
Sbjct: 26 CQGTL--EAREYRLDKEESPAPWDRQNPLEPKNKARFSIPSMTEDYAGRYRCYYRSPVGW 83
Query: 372 SKVSDTGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPEAPKAGDKVRLECVAFGYPVPSY 431
S+ SD PL++ + + G V L C + P+ ++
Sbjct: 84 SQPSD--------PLELVMTGAYSKPTLSALPSPLVTS----GKSVTLLCQS-RSPMDTF 130
Query: 432 NWTRRGSPLPRNAYF-----ENFNRILTIPNVKVEDQGEYICRASNDRSALESS-----V 481
+ + P + + V G Y C +S+ S S +
Sbjct: 131 LLCKERAAHPLLCLRSEHGAQQHQAEFPMSPVTSVHGGTYRCFSSHGFSHYLLSHPSDPL 190
Query: 482 TISIQ 486
+ +
Sbjct: 191 ELIVS 195
Score = 34.4 bits (79), Expect = 0.091
Identities = 25/164 (15%), Positives = 43/164 (26%), Gaps = 22/164 (13%)
Query: 213 TLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVEDRGSY 272
T+ C G Y KE+ N ++P + RF++ + G Y
Sbjct: 23 TIWC-QGTLEAREYRLDKEESPAPWDRQNPLEPKNKARFSIP--------SMTEDYAGRY 73
Query: 273 HCKASNKFG-SIISESVQLAFGFIGEFNLKRAPEIGNQNWGKAM-------FCDPPTNYP 324
C + G S S+ ++L P + C +
Sbjct: 74 RCYYRSPVGWSQPSDPLELVM-----TGAYSKPTLSALPSPLVTSGKSVTLLCQSRSPMD 128
Query: 325 GVNYYWARDYFPNFVEEDKRVFVSYDGALYFSALEQIDAGNYSC 368
R P + + S + + G Y C
Sbjct: 129 TFLLCKERAAHPLLCLRSEHGAQQHQAEFPMSPVTSVHGGTYRC 172
Score = 31.7 bits (72), Expect = 0.83
Identities = 14/83 (16%), Positives = 24/83 (28%), Gaps = 11/83 (13%)
Query: 212 ITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVEDRGS 271
+TL C P ++ KE L + + G+
Sbjct: 117 VTLLCQ-SRSPMDTFLLCKERAAHPLLCLRSEHGAQQHQAEFPMSPV------TSVHGGT 169
Query: 272 YHC----KASNKFGSIISESVQL 290
Y C S+ S S+ ++L
Sbjct: 170 YRCFSSHGFSHYLLSHPSDPLEL 192
Score = 30.6 bits (69), Expect = 2.0
Identities = 19/105 (18%), Positives = 34/105 (32%), Gaps = 17/105 (16%)
Query: 687 PKITIAAH--------RNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINID 738
PK T+ A ++ + C E Y + + + P +
Sbjct: 4 PKPTLWAEPGSVISWGNSVTIWCQGTLE---AREYRLDKEE----SPAPWDRQNPLEPKN 56
Query: 739 GGLLEITNASFADAGEYECVVKSTVG--KISTKTTVIVEGPPGLP 781
I + + AG Y C +S VG + S +++ G P
Sbjct: 57 KARFSIPSMTEDYAGRYRCYYRSPVGWSQPSDPLELVMTGAYSKP 101
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse;
HET: NAG BMA MAN; 3.25A {Homo sapiens}
Length = 440
Score = 66.7 bits (163), Expect = 2e-11
Identities = 20/107 (18%), Positives = 37/107 (34%), Gaps = 14/107 (13%)
Query: 586 KPSFKKRPLESETYAGEGGNVTIFCNPEAAPKPKFVWKK-DGNIIGSG---GRRKIFENG 641
P + P ++ EG + C + W +G ++ G R + +G
Sbjct: 341 APVIVEPP--ADLNVTEGMAAELKCR-ASTSLTSVSWITPNGTVMTHGAYKVRIAVLSDG 397
Query: 642 NLLISPVSRDDSGIYSCTATNVHGMDESKGRLIVLHGPSYYEQLPPK 688
L + V+ D+G+Y+C +N G + L V
Sbjct: 398 TLNFTNVTVQDTGMYTCMVSNSVGNTTASATLNVT-------GTHHH 437
Score = 53.6 bits (129), Expect = 2e-07
Identities = 22/96 (22%), Positives = 37/96 (38%), Gaps = 7/96 (7%)
Query: 684 QLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINI-DGGLL 742
+ P + + +L+C A T + W G + + I + G L
Sbjct: 346 EPPADLNVTEGMAAELKCRASTSL---TSVSWITPN---GTVMTHGAYKVRIAVLSDGTL 399
Query: 743 EITNASFADAGEYECVVKSTVGKISTKTTVIVEGPP 778
TN + D G Y C+V ++VG + T+ V G
Sbjct: 400 NFTNVTVQDTGMYTCMVSNSVGNTTASATLNVTGTH 435
Score = 50.9 bits (122), Expect = 1e-06
Identities = 21/82 (25%), Positives = 33/82 (40%), Gaps = 6/82 (7%)
Query: 414 GDKVRLECVAFGYPVPSYNWTR-RGSPLPRNAYFENF----NRILTIPNVKVEDQGEYIC 468
G L+C A + S +W G+ + AY + L NV V+D G Y C
Sbjct: 356 GMAAELKCRAST-SLTSVSWITPNGTVMTHGAYKVRIAVLSDGTLNFTNVTVQDTGMYTC 414
Query: 469 RASNDRSALESSVTISIQAEPN 490
SN +S T+++ +
Sbjct: 415 MVSNSVGNTTASATLNVTGTHH 436
Score = 42.0 bits (99), Expect = 8e-04
Identities = 20/93 (21%), Positives = 31/93 (33%), Gaps = 12/93 (12%)
Query: 190 PYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDK 249
P ++ P D+ L C A S W + ++ + +
Sbjct: 342 PVIVEPPADLNVTEG-----MAAELKCRAST-SLTSVSWITPN---GTVMTH--GAYKVR 390
Query: 250 RFTLSGGNLIINDPRQVEDRGSYHCKASNKFGS 282
LS G L + V+D G Y C SN G+
Sbjct: 391 IAVLSDGTLNFTNV-TVQDTGMYTCMVSNSVGN 422
Score = 40.1 bits (94), Expect = 0.003
Identities = 20/104 (19%), Positives = 32/104 (30%), Gaps = 8/104 (7%)
Query: 488 EPNFTIPLTDKHMDNQADLTWTCEAFGVPDVTYSWFR-NGELLNSETLPLEDQDRYFIQD 546
P P D ++ C A + SW NG ++ + R +
Sbjct: 341 APVIVEPPADLNVTEGMAAELKCRAST-SLTSVSWITPNGTVMTHGA----YKVRIAVLS 395
Query: 547 N-VLTIRYLNPERDPAMYQCRAKNQLKTRYSSAQLRVLTLKPSF 589
+ L + + D MY C N + +SA L V
Sbjct: 396 DGTLNFTNVTVQ-DTGMYTCMVSNSVGNTTASATLNVTGTHHHH 438
Score = 30.5 bits (69), Expect = 3.1
Identities = 10/29 (34%), Positives = 14/29 (48%)
Query: 340 EEDKRVFVSYDGALYFSALEQIDAGNYSC 368
R+ V DG L F+ + D G Y+C
Sbjct: 386 AYKVRIAVLSDGTLNFTNVTVQDTGMYTC 414
>3t04_D Monobody 7C12; engineered binding protein, antibody mimic,
protein-protein SH2 domain, ATP-binding, phosphoprotein;
2.10A {Homo sapiens}
Length = 103
Score = 60.9 bits (148), Expect = 2e-11
Identities = 22/106 (20%), Positives = 37/106 (34%), Gaps = 11/106 (10%)
Query: 777 PPGLPGGVQVVEVHKTSATIQWTDGATNGRPITHYKIIARTNWNSTWFNVSEHVIGKEVD 836
+P ++VV+ TS I W ++ + + +Y+I T+ +E
Sbjct: 7 VSSVPTKLEVVDATPTSLKISWDAYYSSWQNVKYYRI--------TYGETGGDSPVQEFT 58
Query: 837 RYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSP--SPQYNT 880
A+I L P Y V A + G + S Y T
Sbjct: 59 VPGYYSTATISG-LKPGVDYTITVYAYDTFFPGYEPNSPISINYRT 103
Score = 43.2 bits (102), Expect = 3e-05
Identities = 19/79 (24%), Positives = 29/79 (36%), Gaps = 11/79 (13%)
Query: 902 LSISWEPLPREKQNAPNIYYKIFWRKKN-DTEFQSETLKEYGNVGIAVVR--IPSEFYYT 958
L ISW+ YY+I + + D+ Q T+ G A + P
Sbjct: 24 LKISWDAYYSS--WQNVKYYRITYGETGGDSPVQEFTVP--GYYSTATISGLKP----GV 75
Query: 959 EYEVKVQAINDVGPGPESE 977
+Y + V A + PG E
Sbjct: 76 DYTITVYAYDTFFPGYEPN 94
>1p6f_A NKP46, natural cytotoxicity triggering receptor 1; natural
cytotoxicity receptor, NK cell receptor, immunoglobulin
fold, immune system; 2.20A {Homo sapiens} SCOP: b.1.1.4
b.1.1.4
Length = 242
Score = 64.5 bits (157), Expect = 2e-11
Identities = 26/179 (14%), Positives = 49/179 (27%), Gaps = 23/179 (12%)
Query: 586 KPSFKKRPLESETYAGEGGNVTIFC--NPEAAPKPKFVWKKDGNIIGSGGRRKIFENG-- 641
KP E + VTI C N A ++ +G++ +
Sbjct: 7 KPFIW---AEPHFMVPKEKQVTICCQGNYGAV---EYQLHFEGSLFAVDRPKPPERINKV 60
Query: 642 NLLISPVSRDDSGIYSCTATNVHGMDESKGRLIVLHGPSYYE---QLPPKITIAAHRNLQ 698
I ++ +G YSC E L ++ Y + P + + +
Sbjct: 61 KFYIPDMNSRMAGQYSCIYRVGELWSEPSNLLDLVVTEMYDTPTLSVHPGPEVISGEKVT 120
Query: 699 LRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEITNASFADAGEYEC 757
C T ++ G + ++ + + A G Y C
Sbjct: 121 FYCRLDTA---TSMFLLLKEG------RSSHVQRGY-GKVQAEFPLGPVTTAHRGTYRC 169
Score = 58.0 bits (140), Expect = 2e-09
Identities = 32/181 (17%), Positives = 53/181 (29%), Gaps = 18/181 (9%)
Query: 484 SIQAEPNFTIPLTDKHMDNQADLTWTCEAFGVPDVTYSWFRNGELLNSETL-PLEDQDRY 542
I AEP+F +P + +T C+ V Y G L + P E ++
Sbjct: 9 FIWAEPHFMVPKEKQ-------VTICCQG-NYGAVEYQLHFEGSLFAVDRPKPPERINK- 59
Query: 543 FIQDNVLTIRYLNPERDPAMYQCRAKNQLKTRYSSAQLRVLTLKPSFKKRPLES-ETYAG 601
I +N Y C + S L ++ +
Sbjct: 60 ----VKFYIPDMNSR-MAGQYSCIYRVGELWSEPSNLLDLVVTEMYDTPTLSVHPGPEVI 114
Query: 602 EGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTAT 661
G VT +C + F+ K+G + + PV+ G Y C +
Sbjct: 115 SGEKVTFYCRLDT-ATSMFLLLKEGRSSHVQRGYGKVQ-AEFPLGPVTTAHRGTYRCFGS 172
Query: 662 N 662
Sbjct: 173 Y 173
Score = 52.6 bits (126), Expect = 1e-07
Identities = 27/222 (12%), Positives = 53/222 (23%), Gaps = 21/222 (9%)
Query: 414 GDKVRLECVAFGYPVPSYNWTRRGSPLP---RNAYFENFNRILTIPNVKVEDQGEYICRA 470
+V + C Y Y GS IP++ G+Y C
Sbjct: 21 EKQVTICCQG-NYGAVEYQLHFEGSLFAVDRPKPPERINKVKFYIPDMNSRMAGQYSCIY 79
Query: 471 SNDRSALESSVTISIQAEPNFTIP----LTDKHMDNQADLTWTCEAFGVPDVTYSWFRNG 526
E S + + + P + + +T+ C + + G
Sbjct: 80 RVGELWSEPSNLLDLVVTEMYDTPTLSVHPGPEVISGEKVTFYCRL-DTATSMFLLLKEG 138
Query: 527 ELLNSETLPLEDQDRYFIQDNVLTIRYLNPERDPAMYQCRAKNQLKTRYS--SAQLRVLT 584
+ + + Q + + + Y+C +S S +++L
Sbjct: 139 RSSHVQRGYGKVQAEF-------PLGPVTTA-HRGTYRCFGSYN-NHAWSFPSEPVKLLV 189
Query: 585 LKPSFKKRPLESETYAGEGGNVTIFCNPEAAPKPKFVWKKDG 626
+ T E K D
Sbjct: 190 TGDIENTSLAPEDPTFPADTWGTYLLTTETGL-QKDHALWDH 230
Score = 44.9 bits (106), Expect = 6e-05
Identities = 26/181 (14%), Positives = 42/181 (23%), Gaps = 23/181 (12%)
Query: 317 CDPPTNYPGVNYYWARDYFPNFVEEDKRVFVSYDGALYFSALEQIDAGNYSCNVQSKVSD 376
C V Y + V+ K Y + AG YSC +
Sbjct: 28 CQGNY--GAVEYQLHFEGSLFAVDRPKPPERINKVKFYIPDMNSRMAGQYSCIYRV---- 81
Query: 377 TGRNGPFFPLKVFPHSNFQQLKFPNNFPKTF-----PEAPKAGDKVRLECVAFGYPVPSY 431
SN L + +G+KV C +
Sbjct: 82 --------GELWSEPSNLLDLVVTEMYDTPTLSVHPGPEVISGEKVTFYCRL-DTATSMF 132
Query: 432 NWTRRGSPLPRNAYFENFNRILTIPNVKVEDQGEYICRASNDR---SALESSVTISIQAE 488
+ G + + V +G Y C S + S V + + +
Sbjct: 133 LLLKEGRSSHVQRGYGKVQAEFPLGPVTTAHRGTYRCFGSYNNHAWSFPSEPVKLLVTGD 192
Query: 489 P 489
Sbjct: 193 I 193
Score = 34.1 bits (78), Expect = 0.15
Identities = 25/175 (14%), Positives = 44/175 (25%), Gaps = 23/175 (13%)
Query: 212 ITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVEDRGS 271
+T+ C G Y Y+ E + + ++ +F + G
Sbjct: 24 VTICCQ-GNYGAVEYQLHFEGSLFAVDRPKPPERINKVKFYIP--------DMNSRMAGQ 74
Query: 272 YHCKASNKFG-SIISESVQL-AFGFIGEFNLKRAPEIGNQNWGKAMF-CDPPTNYPGVNY 328
Y C S S + L L P + K F C T +
Sbjct: 75 YSCIYRVGELWSEPSNLLDLVVTEMYDTPTLSVHPGPEVISGEKVTFYCRLDTATSM--F 132
Query: 329 YWARDYFPNFVEEDKRVFVSYDGALYFSALEQIDAGNYSC------NVQSKVSDT 377
++ + V+ + G Y C + S S+
Sbjct: 133 LLLKEGRSSHVQRGYG---KVQAEFPLGPVTTAHRGTYRCFGSYNNHAWSFPSEP 184
Score = 31.4 bits (71), Expect = 1.2
Identities = 19/109 (17%), Positives = 35/109 (32%), Gaps = 17/109 (15%)
Query: 683 EQLPPKITIAAH--------RNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPN 734
+Q PK I A + + + C + V Y G ++ + P
Sbjct: 2 QQTLPKPFIWAEPHFMVPKEKQVTICCQGNYG---AVEYQLHFEG----SLFAVDRPKPP 54
Query: 735 INIDGGLLEITNASFADAGEYECVVKSTVGKI--STKTTVIVEGPPGLP 781
I+ I + + AG+Y C+ + S ++V P
Sbjct: 55 ERINKVKFYIPDMNSRMAGQYSCIYRVGELWSEPSNLLDLVVTEMYDTP 103
>2ede_A Netrin receptor DCC; tumor suppressor protein DCC, colorectal
cancer suppressor, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 114
Score = 60.9 bits (148), Expect = 2e-11
Identities = 23/113 (20%), Positives = 34/113 (30%), Gaps = 10/113 (8%)
Query: 775 EGPPGLPGGVQV--VEVHKTSATIQWTDGATNGRPITHYKIIARTNWNSTWFNVSEHVIG 832
GP P + V E + + W IT Y + + N + I
Sbjct: 6 SGPTSAPKDLTVITREGKPRAVIVSWQPPLEANGKITAYILFYTLDKNIPIDDWIMETIS 65
Query: 833 KEVDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPSPQYNTPADKP 885
R I + L + Y F++ A N G G S P + T
Sbjct: 66 ------GDRLTHQIMD-LNLDTMYYFRIQARNSKGVGPLSDPI-LFRTLKVSG 110
Score = 50.5 bits (121), Expect = 8e-08
Identities = 17/103 (16%), Positives = 35/103 (33%), Gaps = 7/103 (6%)
Query: 879 NTPADKPYQAPSRIGGGGGKIGDLSISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETL 938
++ + P AP + + ++ P + N Y +F+ + +
Sbjct: 2 SSGSSGPTSAPKDLTVITREGKPRAVIVSWQPPLEANGKITAYILFYTLDKNIPIDDWIM 61
Query: 939 KEY-GNVGIAVVR--IPSEFYYTEYEVKVQAINDVGPGPESEV 978
+ G+ + T Y ++QA N G GP S+
Sbjct: 62 ETISGDRLTHQIMDLNL----DTMYYFRIQARNSKGVGPLSDP 100
>3ubu_A Agglucetin subunit alpha-1; platelet inhibiting, agkisacucetin,
dimer, toxin, C-type LEC GPIB inhibitor, GPIB binding;
1.91A {Deinagkistrodon acutus}
Length = 131
Score = 61.7 bits (150), Expect = 2e-11
Identities = 24/94 (25%), Positives = 36/94 (38%), Gaps = 11/94 (11%)
Query: 26 ELRCPQHWVQYRDSCYRFVKSPLKTRNDAKLNCKSLD--SDLANVNDADEHGFIMYQLFW 83
++ C W Y SCYR K KT +DA+ C L ++ A E F+ +
Sbjct: 1 DVDCLPGWSAYDQSCYRVFKLL-KTWDDAEKFCTERPKGGHLVSIESAGERDFVAQLVSE 59
Query: 84 QDPQRRKWYFGGTQQSPN-----LWVNEDGTNLN 112
W G QS W DG++++
Sbjct: 60 NKQTDNVW-LGLKIQSKGQQCSTEWT--DGSSVS 90
>3g8l_A Lectin-related NK cell receptor LY49L1; natural killer cell
receptor, immune system; 2.50A {Mus musculus}
Length = 190
Score = 63.4 bits (154), Expect = 2e-11
Identities = 18/92 (19%), Positives = 33/92 (35%), Gaps = 21/92 (22%)
Query: 29 CPQHWVQYRDSCYRFVKSPLKTRNDAKLNCKSLDSDLANVNDADEHGFIMYQL----FW- 83
++W Y CY FV KT + K C+ L +++ DE F+ + +W
Sbjct: 67 FEKYWFCYGIKCYYFVMDR-KTWSGCKQTCQISSLSLLKIDNEDELKFLKLLVPSDSYWI 125
Query: 84 ---QDPQRRKWYFGGTQQSPNLWVNEDGTNLN 112
D +++ W W+ +
Sbjct: 126 GLSYDNKKKDW----------AWI--NNGPSK 145
>1fvu_B Botrocetin beta chain; VON WILLBRAND factor modulator, C-type
lectin, metal- binding, loop exchanged dimer, toxin;
1.80A {Bothrops jararaca} SCOP: d.169.1.1 PDB: 1ijk_C
1u0n_C 1u0o_B
Length = 125
Score = 61.3 bits (149), Expect = 2e-11
Identities = 19/87 (21%), Positives = 29/87 (33%), Gaps = 5/87 (5%)
Query: 29 CPQHWVQYRDSCYRFVKSPLKTRNDAKLNCK--SLDSDLANVNDADEHGFIMYQLFWQDP 86
CP W Y CYRF K +DA+ C + L + +E F+
Sbjct: 2 CPPDWSSYEGHCYRFFKEW-MHWDDAEEFCTEQQTGAHLVSFQSKEEADFVRSLTSEMLK 60
Query: 87 QRRKWYFGGT-QQSPNLWVNEDGTNLN 112
W G + + + DG +
Sbjct: 61 GDVVW-IGLSDVWNKCRFEWTDGMEFD 86
>1pwb_A SP-D, PSP-D, pulmonary surfactant-associated protein D; collectin,
C-type lectin, alpha-helical coiled coil, carbohydrate
recognition domain; HET: GLC; 1.40A {Homo sapiens} SCOP:
d.169.1.1 h.1.1.1 PDB: 1pw9_A* 3ikn_A* 3ikp_A* 3ikq_A*
3ikr_A* 2rie_A* 2ggx_A* 2ggu_A* 2ork_A* 2orj_A* 2ria_A*
2rib_A* 2ric_A* 2rid_A* 2os9_A* 3dbz_A 3g81_A* 3g83_A*
1b08_A 3g84_A* ...
Length = 177
Score = 62.8 bits (153), Expect = 2e-11
Identities = 11/88 (12%), Positives = 29/88 (32%), Gaps = 5/88 (5%)
Query: 26 ELRCPQHWVQYRDSCYRFVKSPLKTRNDAKLNCKSLDSDLANVNDADEHGFIMYQLFWQD 85
++ + + ++ K +A+L C LA+ A E+ + +
Sbjct: 52 KVELFPNGQSVGEKIFKTAGFV-KPFTEAQLLCTQAGGQLASPRSAAENAALQQLV---V 107
Query: 86 PQRRKWYFGGT-QQSPNLWVNEDGTNLN 112
+ + T ++ + G +L
Sbjct: 108 AKNEAAFLSMTDSKTEGKFTYPTGESLV 135
>2e7b_A Obscurin; IG-like domain, structural genomics, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens} PDB: 2yz8_A
Length = 103
Score = 60.4 bits (147), Expect = 2e-11
Identities = 18/80 (22%), Positives = 29/80 (36%), Gaps = 9/80 (11%)
Query: 414 GDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYF----ENFNRILTIPNVKVEDQGEYICR 469
G L CV P W + L + E L + N++ +D G Y C
Sbjct: 23 GGAATLRCVLSSVAAP-VKWCYGNNVLRPGDKYSLRQEGAMLELVVRNLRPQDSGRYSCS 81
Query: 470 ASNDRSALESSVTISIQAEP 489
+ +S T+++ A P
Sbjct: 82 FGDQ----TTSATLTVTALP 97
Score = 60.0 bits (146), Expect = 3e-11
Identities = 24/97 (24%), Positives = 39/97 (40%), Gaps = 10/97 (10%)
Query: 587 PSFKKRPLESETYAGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGN---L 643
F++ L+ EGG T+ C + P W N++ G + + + G L
Sbjct: 9 VRFQE-ALKDLE-VLEGGAATLRCVLSSVAAP-VKWCYGNNVLRPGDKYSLRQEGAMLEL 65
Query: 644 LISPVSRDDSGIYSCTATNVHGMDESKGRLIVLHGPS 680
++ + DSG YSC+ G + L V PS
Sbjct: 66 VVRNLRPQDSGRYSCSF----GDQTTSATLTVTALPS 98
Score = 53.1 bits (128), Expect = 7e-09
Identities = 24/107 (22%), Positives = 31/107 (28%), Gaps = 17/107 (15%)
Query: 489 PNFTIPLTDKHMDNQADLTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRY-FIQDN 547
F L D + T C V W L D+Y Q+
Sbjct: 9 VRFQEALKDLEVLEGGAATLRCVLSSVA-APVKWCYGNN-------VLRPGDKYSLRQEG 60
Query: 548 ---VLTIRYLNPERDPAMYQCRAKNQLKTRYSSAQLRVLTLKPSFKK 591
L +R L P+ D Y C +Q +SA L V L
Sbjct: 61 AMLELVVRNLRPQ-DSGRYSCSFGDQT----TSATLTVTALPSGPSS 102
Score = 48.1 bits (115), Expect = 4e-07
Identities = 14/72 (19%), Positives = 24/72 (33%), Gaps = 15/72 (20%)
Query: 714 IWTHNGVRIGNMDLNELETPNINI--DGGL--LEITNASFADAGEYECVVKSTVGKISTK 769
W + + ++ +G + L + N D+G Y C G +T
Sbjct: 40 KWCYGNNVL-------RPGDKYSLRQEGAMLELVVRNLRPQDSGRYSCS----FGDQTTS 88
Query: 770 TTVIVEGPPGLP 781
T+ V P P
Sbjct: 89 ATLTVTALPSGP 100
Score = 40.8 bits (96), Expect = 2e-04
Identities = 17/95 (17%), Positives = 29/95 (30%), Gaps = 17/95 (17%)
Query: 190 PYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDK 249
F + D+ TL C P +W + N++ P
Sbjct: 9 VRFQEALKDLEVLEGGA-----ATLRCVLSSVAAP-VKWCYGN--------NVLRPGDKY 54
Query: 250 RFTLSGGN--LIINDPRQVEDRGSYHCKASNKFGS 282
G L++ + R +D G Y C ++ S
Sbjct: 55 SLRQEGAMLELVVRNLR-PQDSGRYSCSFGDQTTS 88
>1ukm_B EMS16 B chain, EMS16 subunit B; domain swapping, C-type lectin,
toxin; HET: NAG; 1.90A {Echis multisquamatus} SCOP:
d.169.1.1 PDB: 1v7p_B*
Length = 128
Score = 61.3 bits (149), Expect = 2e-11
Identities = 17/87 (19%), Positives = 29/87 (33%), Gaps = 5/87 (5%)
Query: 29 CPQHWVQYRDSCYRFVKSPLKTRNDAKLNCKSLD--SDLANVNDADEHGFIMYQLFWQDP 86
CP W + CY+ + K +A+ C S LA+++ ++E F+
Sbjct: 1 CPLGWSSFDQHCYKVFEPV-KNWTEAEEICMQQHKGSRLASIHSSEEEAFVSKLASKALK 59
Query: 87 QRRKWYFGGT-QQSPNLWVNEDGTNLN 112
W G W D +
Sbjct: 60 FTSMW-IGLNNPWKDCKWEWSDNARFD 85
>1egg_A Macrophage mannose receptor; C-type lectin, sugar binding protein;
2.30A {Homo sapiens} SCOP: d.169.1.1 PDB: 1egi_A
Length = 147
Score = 61.7 bits (150), Expect = 2e-11
Identities = 18/91 (19%), Positives = 41/91 (45%), Gaps = 6/91 (6%)
Query: 28 RCPQHWV--QYRDSCYRFVKSPLKTR---NDAKLNCKSLDSDLANVNDADEHGFIMYQLF 82
+CP+ W C++ + +++ C++L DLA++N+ +E I +
Sbjct: 4 KCPEDWGASSRTSLCFKLYAKGKHEKKTWFESRDFCRALGGDLASINNKEEQQTIWRLIT 63
Query: 83 WQDPQRRKWYFGGTQQSPN-LWVNEDGTNLN 112
+ ++ G T SP+ + DG+ ++
Sbjct: 64 ASGSYHKLFWLGLTYGSPSEGFTWSDGSPVS 94
>2edb_A Netrin receptor DCC; tumor suppressor protein DCC, colorectal
cancer suppressor, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 116
Score = 60.5 bits (147), Expect = 2e-11
Identities = 20/111 (18%), Positives = 29/111 (26%), Gaps = 12/111 (10%)
Query: 775 EGPPGLPGGVQVVEVHKTSATIQWTDGATNGRPITHYKIIARTNWNSTWFNVSEHVIGKE 834
P P + V + WT + Y I + + +
Sbjct: 15 SQVPDQPSSLHV-RPQTNCIIMSWTPPLNPNIVVRGYII----GYGVGSPYAETVRVDSK 69
Query: 835 VDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPSPQYNTPADKP 885
Y+ IE L S Y + A N G G P S + P
Sbjct: 70 QRYYS------IER-LESSSHYVISLKAFNNAGEGVPLYESATTRSITSGP 113
Score = 42.0 bits (99), Expect = 9e-05
Identities = 20/118 (16%), Positives = 35/118 (29%), Gaps = 22/118 (18%)
Query: 867 GYGEPSSPSPQYNTPADKPYQAPSRIGGGGGKIGDLS----ISWEPLPREKQNAPNIYYK 922
G S P + P PS + + + +SW P P N Y
Sbjct: 1 GSSGSSGPE-NDLDESQVP-DQPSSL-----HVRPQTNCIIMSWTP-PLN-PNIVVRGYI 51
Query: 923 IFWRKKNDTEFQSETLKEYGNVGIAVVR--IPSEFYYTEYEVKVQAINDVGPGPESEV 978
I + + ET++ + + Y + ++A N+ G G
Sbjct: 52 IGYGVGSPYA---ETVRVDSKQRYYSIERLES----SSHYVISLKAFNNAGEGVPLYE 102
>2e7h_A Ephrin type-B receptor 4; FN3 domain, tyrosine- protein kinase
receptor HTK, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 109
Score = 60.2 bits (146), Expect = 3e-11
Identities = 17/109 (15%), Positives = 31/109 (28%), Gaps = 10/109 (9%)
Query: 775 EGPPGLPGGVQVVEVHKTSATIQWTDGATNGRPITHYKIIARTNWNSTWFNVSEHVIGKE 834
P ++V +S ++ W + Y++ +
Sbjct: 5 SSGPPAVSDIRVTRSSPSSLSLAWAVPRAPSGAVLDYEV--------KYHEKGAEGPSSV 56
Query: 835 VDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPSPQYNTPAD 883
T A + L ++Y +V A +E GYG T D
Sbjct: 57 RFLKTSENRAELRG-LKRGASYLVQVRARSEAGYGPFGQEH-HSQTQLD 103
Score = 48.6 bits (116), Expect = 3e-07
Identities = 18/99 (18%), Positives = 35/99 (35%), Gaps = 6/99 (6%)
Query: 880 TPADKPYQAPSRIGGGGGKIGDLSISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETLK 939
+ + P A S I LS++W P + + Y++ + +K S
Sbjct: 3 SGSSGP-PAVSDIRVTRSSPSSLSLAWAV-P-RAPSGAVLDYEVKYHEKGAEGPSSVR-- 57
Query: 940 EYGNVGIAVVRIPSEFYYTEYEVKVQAINDVGPGPESEV 978
+ + Y V+V+A ++ G GP +
Sbjct: 58 -FLKTSENRAELRGLKRGASYLVQVRARSEAGYGPFGQE 95
>1oz7_B Echicetin B-chain; platelet aggregation, dimer, toxin; 2.40A {Echis
carinatus} SCOP: d.169.1.1
Length = 123
Score = 60.5 bits (147), Expect = 3e-11
Identities = 21/87 (24%), Positives = 29/87 (33%), Gaps = 5/87 (5%)
Query: 29 CPQHWVQYRDSCYRFVKSPLKTRNDAKLNCK--SLDSDLANVNDADEHGFIMYQLFWQDP 86
C W Y CY+ K DA+ C D L + ++ E F++ F
Sbjct: 2 CLPDWSVYEGYCYKVFKER-MNWADAEKFCTKQHKDGHLVSFRNSKEVDFVISLAFPMLK 60
Query: 87 QRRKWYFGGT-QQSPNLWVNEDGTNLN 112
W G T W DG L+
Sbjct: 61 NDLVW-IGLTDYWRDCNWEWSDGAQLD 86
>3n06_B PRL-R, prolactin receptor; PH dependence, hematopoietic cytokine,
hormone-hormone recep complex; 2.00A {Homo sapiens} PDB:
3mzg_B 3n0p_B 3ncb_B 1bp3_B 3d48_R 3nce_B 3ncc_B 3ncf_B
3ew3_B 3npz_B 1f6f_B 2lfg_A
Length = 210
Score = 62.8 bits (152), Expect = 4e-11
Identities = 41/199 (20%), Positives = 70/199 (35%), Gaps = 16/199 (8%)
Query: 777 PPGLPGGVQVVEVHKTSATIQWTDGATNGRPITHYKIIARTNWNSTWFNVSEHVIGKEVD 836
PPG P + +K + T W G G P T+Y + + +++ G
Sbjct: 3 PPGKPEIFKCRSPNKETFTCWWRPGTDGGLP-TNYSLTYHREGETLMHECPDYITGGPNS 61
Query: 837 RYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPS--PQYNTPADKPYQAPSRIGG 894
+ G++ S+ W TY V A N++G Y D P + +
Sbjct: 62 CHFGKQYTSM------WRTYIMMVNATNQMGSSFSDELYVDVTYIVQPDPPLELAVEVKQ 115
Query: 895 GGGKIGDLSISWEP--LPREKQNAPNIYYKIFWRKKNDTEFQSETLKEYGNVGIAVVRIP 952
+ L I W P L K + Y+I + + E++ + +I
Sbjct: 116 PEDRKPYLWIKWSPPTLIDLKTGWFTLLYEIRLKPEKAAEWEIHFAGQQTE-----FKIL 170
Query: 953 SEFYYTEYEVKVQAINDVG 971
S +Y V+V+ D G
Sbjct: 171 SLHPGQKYLVQVRCKPDHG 189
Score = 35.5 bits (81), Expect = 0.047
Identities = 25/133 (18%), Positives = 40/133 (30%), Gaps = 15/133 (11%)
Query: 759 VKSTVGKISTKTTVIVEGPPGLPGGVQVVEVHKTSATIQWTDGATNGRPITH----YKII 814
S + V + P L V+ E K I+W+ Y+I
Sbjct: 88 SFSDELYVDVTYIVQPDPPLELAVEVKQPEDRKPYLWIKWSPPTLIDLKTGWFTLLYEIR 147
Query: 815 ARTNWNSTWFNVSEHVIGKEVDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSP 874
+ + W E+ + E I + L P Y +V + GY SP
Sbjct: 148 LKPEKAAEW----------EIHFAGQQTEFKILS-LHPGQKYLVQVRCKPDHGYWSAWSP 196
Query: 875 SPQYNTPADKPYQ 887
+ P+D
Sbjct: 197 ATFIQIPSDFTMN 209
>1jbj_A CD3 epsilon and gamma ectodomain fragment complex; beta-sheet,
C2-SET immunoglobulin superfamily, H-bonded G strand
PAIR, single-chain; NMR {Mus musculus} SCOP: b.1.1.4
b.1.1.4 PDB: 1xmw_A
Length = 186
Score = 61.8 bits (149), Expect = 4e-11
Identities = 31/180 (17%), Positives = 51/180 (28%), Gaps = 43/180 (23%)
Query: 505 DLTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQDNVLTIRYLNPERDPAMYQ 564
+ TC ++ W +NG+ L + D L ++ + D Y
Sbjct: 16 SVELTCPLDSDENLK--WEKNGQELPQKH------------DKHLVLQDFSEVEDSGYYV 61
Query: 565 CRAKNQLKTRYSSAQLRVLTLK----------------------PSFKKRPLESETYAGE 602
C K Y + RV + + K + L +
Sbjct: 62 CYTPASNKNTYLYLKARVGSADDAKKDAAKKDDAKKDDAKKDGSQTNKAKNLVQVDGSRG 121
Query: 603 GGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTATN 662
G+V + C W KDG+II K + ++D G Y C
Sbjct: 122 DGSVLLTCG---LTDKTIKWLKDGSIISPLNATK----NTWNLGNNAKDPRGTYQCQGAK 174
Score = 49.5 bits (117), Expect = 1e-06
Identities = 23/167 (13%), Positives = 46/167 (27%), Gaps = 27/167 (16%)
Query: 323 YPGVNYYWARDYFPNFVEEDKRVFVSYDGALYFSALEQIDAGNYSC-----------NVQ 371
N W ++ + + + FS +E D+G Y C ++
Sbjct: 24 DSDENLKWEKN--GQELPQKHDKHLVLQD---FSEVE--DSGYYVCYTPASNKNTYLYLK 76
Query: 372 SKVSDTGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPEAPKA---GDKVRLECVAFGYPV 428
++V K + + V L C G
Sbjct: 77 ARVGSADDAKKDAAKKDDAKKDDAKKDGSQTNKAKNLVQVDGSRGDGSVLLTC---GLTD 133
Query: 429 PSYNWTRRGSPLPRNAYFENFNRILTIPNVKVEDQGEYICRASNDRS 475
+ W + GS + + + N + +G Y C+ + + S
Sbjct: 134 KTIKWLKDGSII---SPLNATKNTWNLGNNAKDPRGTYQCQGAKETS 177
Score = 47.9 bits (113), Expect = 2e-06
Identities = 26/189 (13%), Positives = 51/189 (26%), Gaps = 48/189 (25%)
Query: 603 GGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGNLLISPVSR-DDSGIYSCTAT 661
G +V + C + W+K+G + + +L++ S +DSG Y C
Sbjct: 14 GTSVELTCPLD--SDENLKWEKNGQELPQKHDK------HLVLQDFSEVEDSGYYVCYTP 65
Query: 662 N------------VHGMDESKGRLIVL-------HGPSYYEQLPPKITIAAHRN-----L 697
V D++K + K + + +
Sbjct: 66 ASNKNTYLYLKARVGSADDAKKDAAKKDDAKKDDAKKDGSQTNKAKNLVQVDGSRGDGSV 125
Query: 698 QLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEITNASFADAGEYEC 757
L C + W +G I ++ + + N + G Y+C
Sbjct: 126 LLTCGLTDKT-----IKWLKDGSIISPLNATKNT----------WNLGNNAKDPRGTYQC 170
Query: 758 VVKSTVGKI 766
Sbjct: 171 QGAKETSNP 179
Score = 39.1 bits (90), Expect = 0.003
Identities = 26/189 (13%), Positives = 49/189 (25%), Gaps = 45/189 (23%)
Query: 210 NDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVEDR 269
+ L+C + + +W K + DK L++ D +VED
Sbjct: 15 TSVELTCPL--DSDENLKWEKNG--------QELPQKHDKH-------LVLQDFSEVEDS 57
Query: 270 GSYHCKASNKFGSII---------SESVQLAFGFIGEFNLKRAPEIGNQ-NWGKAMFCDP 319
G Y C + ++ + + A + G+Q N K +
Sbjct: 58 GYYVCYTPASNKNTYLYLKARVGSADDAKKDAAKKDDAKKDDAKKDGSQTNKAKNLVQVD 117
Query: 320 ----------PTNYPGVNYYWARDYFP-NFVEEDKRVFVSYDGALYFSALEQIDAGNYSC 368
W +D + + K + G Y C
Sbjct: 118 GSRGDGSVLLTCGLTDKTIKWLKDGSIISPLNATKNT-------WNLGNNAKDPRGTYQC 170
Query: 369 NVQSKVSDT 377
+ S+
Sbjct: 171 QGAKETSNP 179
Score = 35.6 bits (81), Expect = 0.037
Identities = 16/115 (13%), Positives = 38/115 (33%), Gaps = 17/115 (14%)
Query: 170 DDRTYQYGMDIENPDKIPRGPYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWF 229
DD + + + + + L+C G + + +W
Sbjct: 83 DDAKKDAAKKDDAKKDDAKKDGSQTNKAKNLVQVDGSRGDGSVLLTC---GLTDKTIKWL 139
Query: 230 KEDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVEDRGSYHCKASNKFGSII 284
K+ ++I PL+ + T + G + RG+Y C+ + + + +
Sbjct: 140 KDG--------SIISPLNATKNTWNLG------NNAKDPRGTYQCQGAKETSNPL 180
>1oz7_A Echicetin A-chain; platelet aggregation, dimer, toxin; 2.40A {Echis
carinatus} SCOP: d.169.1.1
Length = 131
Score = 60.2 bits (146), Expect = 5e-11
Identities = 19/89 (21%), Positives = 32/89 (35%), Gaps = 6/89 (6%)
Query: 29 CPQHWVQYRDSCYRFVKSPLKTRNDAKLNCKSL--DSDLANVNDADEHGFIMYQLFWQDP 86
CP W CY K P KT ++A+ C D L ++ E + +
Sbjct: 2 CPPGWSSNGVYCYMLFKEP-KTWDEAEKFCNKQGKDGHLLSIESKKEEILVDIVVSENIG 60
Query: 87 QRRKWYFGGTQQS---PNLWVNEDGTNLN 112
+ K + G +++S DG+
Sbjct: 61 KMYKIWTGLSERSKEQHCSSRWSDGSFFR 89
>1x4y_A Biregional cell adhesion molecule-related/DOWN- regulated oncogenes
(CDON)binding...; fibronectin type III, FN3; NMR {Mus
musculus} SCOP: b.1.2.1
Length = 114
Score = 59.8 bits (145), Expect = 5e-11
Identities = 20/99 (20%), Positives = 36/99 (36%), Gaps = 1/99 (1%)
Query: 880 TPADKPYQAPSRIGGGGGKIGDLSISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETLK 939
+ + P P + + W +P N P + I++R D++ S+ K
Sbjct: 3 SGSSGPVAGPYITFTDAVNETTIMLKWMYIPASNNNTPIHGFYIYYRP-TDSDNDSDYKK 61
Query: 940 EYGNVGIAVVRIPSEFYYTEYEVKVQAINDVGPGPESEV 978
+ I T Y++K+Q N+ G S V
Sbjct: 62 DMVEGDRYWHSISHLQPETSYDIKMQCFNEGGESEFSNV 100
Score = 59.8 bits (145), Expect = 5e-11
Identities = 23/114 (20%), Positives = 43/114 (37%), Gaps = 12/114 (10%)
Query: 775 EGPPGLPGGVQVVEVHKTSATIQWT---DGATNGRPITHYKIIARTNWNSTWFNVSEHVI 831
GP P V++T+ ++W N PI + I R + + + ++
Sbjct: 6 SGPVAGPYITFTDAVNETTIMLKWMYIPASNNNT-PIHGFYIYYRPTDSDNDSDYKKDMV 64
Query: 832 GKEVDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPSPQYNTPADKP 885
+ ++ I + L P ++Y+ K+ NE G E S+ T A
Sbjct: 65 EGDRYWHS------ISH-LQPETSYDIKMQCFNEGGESEFSNVM-ICETKARSG 110
>1x44_A Myosin-binding protein C, SLOW-type; IG-like domain, SLOW-
type/skeletal muscle SLOW-isoform, structural genomics,
NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4
Length = 103
Score = 59.3 bits (144), Expect = 5e-11
Identities = 25/90 (27%), Positives = 36/90 (40%), Gaps = 13/90 (14%)
Query: 592 RPLESETYAGEGGNVTIFCNPEAA-PKPKFVWKKDGNIIGSG--GRRKIFENGN---LLI 645
+ LE T A G V + C E + W K+G I G R +I G L+I
Sbjct: 12 KQLEDTT-AYCGERVELEC--EVSEDDANVKWFKNGEEIIPGPKSRYRIRVEGKKHILII 68
Query: 646 SPVSRDDSGIYSCTATNVHGMDESKGRLIV 675
++ D+ YS T +S +L V
Sbjct: 69 EGATKADAAEYSVMTTG----GQSSAKLSV 94
Score = 55.8 bits (135), Expect = 9e-10
Identities = 16/82 (19%), Positives = 30/82 (36%), Gaps = 9/82 (10%)
Query: 414 GDKVRLECVAFGYPVPSYNWTRRGSPLPRNA------YFENFNRILTIPNVKVEDQGEYI 467
G++V LEC + W + G + E IL I D EY
Sbjct: 22 GERVELECEVSE-DDANVKWFKNGEEIIPGPKSRYRIRVEGKKHILIIEGATKADAAEYS 80
Query: 468 CRASNDRSALESSVTISIQAEP 489
+ +S + +++ +++ P
Sbjct: 81 VMTTGGQS--SAKLSVDLKSGP 100
Score = 47.3 bits (113), Expect = 9e-07
Identities = 24/98 (24%), Positives = 31/98 (31%), Gaps = 15/98 (15%)
Query: 489 PNFTIPLTDKHMDNQADLTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQDN- 547
T L D + CE D WF+NGE + + RY I+
Sbjct: 8 IMVTKQLEDTTAYCGERVELECEVSE-DDANVKWFKNGEEIIP-----GPKSRYRIRVEG 61
Query: 548 ---VLTIRYLNPERDPAMYQCRAKNQLKTRYSSAQLRV 582
+L I D A Y SSA+L V
Sbjct: 62 KKHILIIEGATKA-DAAEYSVMTTGG----QSSAKLSV 94
Score = 45.4 bits (108), Expect = 4e-06
Identities = 17/71 (23%), Positives = 25/71 (35%), Gaps = 9/71 (12%)
Query: 715 WTHNGVRIGNMDLNELETPNINIDGGL--LEITNASFADAGEYECVVKSTVGKISTKTTV 772
W NG I + I ++G L I A+ ADA EY + + +
Sbjct: 40 WFKNGEEIIPGPKSRYR---IRVEGKKHILIIEGATKADAAEYSVM----TTGGQSSAKL 92
Query: 773 IVEGPPGLPGG 783
V+ G G
Sbjct: 93 SVDLKSGPSSG 103
Score = 43.1 bits (102), Expect = 3e-05
Identities = 19/98 (19%), Positives = 27/98 (27%), Gaps = 19/98 (19%)
Query: 189 GPYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSD 248
G KQ D +R + L C + + +WFK I P
Sbjct: 7 GIMVTKQLEDTTAYCGER-----VELECEVSE-DDANVKWFKNG--------EEIIPGPK 52
Query: 249 KRFTLSGGN----LIINDPRQVEDRGSYHCKASNKFGS 282
R+ + LII D Y + S
Sbjct: 53 SRYRIRVEGKKHILIIEGA-TKADAAEYSVMTTGGQSS 89
Score = 28.1 bits (63), Expect = 5.3
Identities = 9/50 (18%), Positives = 14/50 (28%), Gaps = 3/50 (6%)
Query: 324 PGVNYYWARDYFPNFVEEDKRVFVSYDGA---LYFSALEQIDAGNYSCNV 370
N W ++ R + +G L + DA YS
Sbjct: 34 DDANVKWFKNGEEIIPGPKSRYRIRVEGKKHILIIEGATKADAAEYSVMT 83
>1uen_A KIAA0343 protein; immunoglobulin-like beta-sandwich fold,
fibronectin type III, NG-CAM related cell adhesion
molecule, structural genomics; NMR {Homo sapiens} SCOP:
b.1.2.1
Length = 125
Score = 60.1 bits (146), Expect = 5e-11
Identities = 22/110 (20%), Positives = 42/110 (38%), Gaps = 5/110 (4%)
Query: 872 SSPSPQYNTPADKPYQAPSRIGGGGGKIGDLSISWEPLPREKQNAPNIYYKIFWRKKNDT 931
SS S + + D P AP + + W+P+P + Y+I++ K +
Sbjct: 2 SSGSSGH-SGEDLPMVAPGNVRVNVVNSTLAEVHWDPVPLKSIRGHLQGYRIYYWKTQSS 60
Query: 932 EFQSETLKEYGNVGIAV----VRIPSEFYYTEYEVKVQAINDVGPGPESE 977
++ E + +P ++ Y + V+ +N G GP S
Sbjct: 61 SKRNRRHIEKKILTFQGSKTHGMLPGLEPFSHYTLNVRVVNGKGEGPASP 110
Score = 51.6 bits (124), Expect = 5e-08
Identities = 28/112 (25%), Positives = 42/112 (37%), Gaps = 7/112 (6%)
Query: 777 PPGLPGGVQVVEVHKTSATIQWT---DGATNGRPITHYKIIARTNWNSTWFNVSEHVIGK 833
P PG V+V V+ T A + W + G + Y+I +S+ N H+ K
Sbjct: 14 PMVAPGNVRVNVVNSTLAEVHWDPVPLKSIRGH-LQGYRIYYWKTQSSSKRNR-RHIEKK 71
Query: 834 EVDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPSPQYNTPADKP 885
+ + + L P+S Y V N G G S +NTP
Sbjct: 72 ILTFQGSKTHGMLPG-LEPFSHYTLNVRVVNGKGEGPASPDR-VFNTPEGSG 121
>3b83_A Ten-D3; beta sheet, computational redesigned protein, alternative
splicing, cell adhesion, coiled coil, EGF-like domain,
extracellular matrix; 2.40A {Homo sapiens}
Length = 100
Score = 58.9 bits (143), Expect = 6e-11
Identities = 19/95 (20%), Positives = 36/95 (37%), Gaps = 12/95 (12%)
Query: 781 PGGVQVVEVHKTSATIQWTDGATNGRPITHYKIIARTNWNSTWFNVSEHVIGKEVDRYTG 840
P ++V + T+A + W PI + + + + + + T
Sbjct: 5 PFNIKVTNITLTTAVVTWQPPIL---PIEGILVTFGRKNDPSDETTVD--LTSSITSLT- 58
Query: 841 RKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPS 875
+ N L P +TYE +++A N Y P S +
Sbjct: 59 -----LTN-LEPNTTYEIRIVARNGQQYSPPVSTT 87
Score = 34.3 bits (79), Expect = 0.027
Identities = 15/78 (19%), Positives = 28/78 (35%), Gaps = 12/78 (15%)
Query: 902 LSISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETLKEYGNVGIAVVR--IPSEFYYTE 959
++W+P P P + + +KND T+ ++ + P T
Sbjct: 18 AVVTWQP-PI----LPIEGILVTFGRKNDPS-DETTVDLTSSITSLTLTNLEP----NTT 67
Query: 960 YEVKVQAINDVGPGPESE 977
YE+++ A N P
Sbjct: 68 YEIRIVARNGQQYSPPVS 85
>1jzn_A Galactose-specific lectin; C-type lectin, protein-disaccharide
complex, sugar binding P; HET: BGC GAL; 2.20A {Crotalus
atrox} SCOP: d.169.1.1 PDB: 1muq_A*
Length = 135
Score = 60.1 bits (146), Expect = 7e-11
Identities = 17/87 (19%), Positives = 31/87 (35%), Gaps = 4/87 (4%)
Query: 29 CPQHWVQYRDSCYRFVKSPLKTRNDAKLNCKSLDS--DLANVNDADEHGFIMYQLFWQDP 86
CP W+ CY+ KT DA++ C+ LA+ + E I +
Sbjct: 3 CPLDWLPMNGLCYKIFNQL-KTWEDAEMFCRKYKPGCHLASFHRYGESLEIAEYISDYHK 61
Query: 87 QRRKWYFGGT-QQSPNLWVNEDGTNLN 112
+ + G ++ W D + +
Sbjct: 62 GQENVWIGLRDKKKDFSWEWTDRSCTD 88
>1x5i_A Neogenin; RGM binding, fibronectin type III domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
b.1.2.1
Length = 126
Score = 59.8 bits (145), Expect = 8e-11
Identities = 29/126 (23%), Positives = 42/126 (33%), Gaps = 13/126 (10%)
Query: 761 STVGKISTKTTVIVEG-PPGLPGGVQVVEVHKTSATIQWTDGATNGRPITHYKIIARTNW 819
+ T + + E P +P + V TS + WT + Y I
Sbjct: 10 TDWLSAETFESDLDETRVPEVPSSLHV-RPLVTSIVVSWTPPENQNIVVRGYAI------ 62
Query: 820 NSTWFNVSEHVIGKEVDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPSPQYN 879
+ S H +VD + +IEN L P S Y + A N +G G P S
Sbjct: 63 --GYGIGSPHAQTIKVDYKQ--RYYTIEN-LDPSSHYVITLKAFNNVGEGIPLYESAVTR 117
Query: 880 TPADKP 885
P
Sbjct: 118 PHTSGP 123
Score = 46.3 bits (110), Expect = 4e-06
Identities = 25/132 (18%), Positives = 41/132 (31%), Gaps = 38/132 (28%)
Query: 863 GNELGYGEPSSPSPQYNTPADKPYQ-----APSRIGGGGGKIGDLS----ISWEPLPREK 913
G+ G P++ T + PS + + L +SW P P E
Sbjct: 1 GSSGSSG-PATDWLSAETFESDLDETRVPEVPSSL-----HVRPLVTSIVVSWTP-P-EN 52
Query: 914 QNAPNIYYKIFWRKKNDTEFQSETLKEYGNVGIAVVRIPSEFYY--------TEYEVKVQ 965
QN Y I + Q+ + + YY + Y + ++
Sbjct: 53 QNIVVRGYAIGYGI-GSPHAQTIKVD------------YKQRYYTIENLDPSSHYVITLK 99
Query: 966 AINDVGPGPESE 977
A N+VG G
Sbjct: 100 AFNNVGEGIPLY 111
>1x5z_A Receptor-type tyrosine-protein phosphatase delta; fibronectin type
III domain containing protein, structural genomics,
NPPSFA; NMR {Homo sapiens} SCOP: b.1.2.1
Length = 115
Score = 59.3 bits (144), Expect = 8e-11
Identities = 23/120 (19%), Positives = 45/120 (37%), Gaps = 14/120 (11%)
Query: 767 STKTTVIV-EGPPGLPGGVQVVEVHKTSATIQWTDGATNGRPITHYKIIARTNWNSTWFN 825
S VI G PG P + +TS + WT + I +Y+++ + +
Sbjct: 6 SGDIQVITQTGVPGQPLNFKAEPESETSILLSWTPPR-SD-TIANYELVYKDGEHGEEQR 63
Query: 826 VSEHVIGKEVDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPSPQYNTPADKP 885
++ ++ T ++ L P S Y F++ A + G G ++ + P
Sbjct: 64 IT-------IEPGT---SYRLQG-LKPNSLYYFRLAARSPQGLGASTAEISARTMQSSGP 112
Score = 48.5 bits (116), Expect = 5e-07
Identities = 22/124 (17%), Positives = 36/124 (29%), Gaps = 35/124 (28%)
Query: 867 GYGEPSSPSPQYNTPADKPYQAPSRIGGGGGKIGDLS-----ISWEPLPREKQNAPNIYY 921
G S Q T P P K S +SW P P ++ Y
Sbjct: 1 GSSGSSGDI-QVITQTGVP-GQPLNF-----KAEPESETSILLSWTP-P---RSDTIANY 49
Query: 922 KIFWRKKNDTEFQSETLKEYGNVGIAVVRIPSEFY-------YTEYEVKVQAINDVGPGP 974
++ ++ E Q T++ P Y + Y ++ A + G G
Sbjct: 50 ELVYKDGEHGEEQRITIE------------PGTSYRLQGLKPNSLYYFRLAARSPQGLGA 97
Query: 975 ESEV 978
+
Sbjct: 98 STAE 101
>1uct_A Immunoglobulin alpha FC receptor; beta stands, immune system; 2.10A
{Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1ovz_A*
1ow0_C*
Length = 218
Score = 61.8 bits (150), Expect = 9e-11
Identities = 28/186 (15%), Positives = 54/186 (29%), Gaps = 19/186 (10%)
Query: 578 AQLRVLTLKPSFKKRPLESETYAGEGGNVTIFCN-PEAAPKPKFVWKKDGNIIGSGGRRK 636
AQ P +S G+V I C A + + K+ G R K
Sbjct: 2 AQEGDFP-MPFIS---AKSSPVIPLDGSVKIQCQAIREAYLTQLMIIKNSTYREIGRRLK 57
Query: 637 IFE--NGNLLISPVSRDDSGIYSCTATNVHGMDESKGRLIVLHGPSYYE---QLPPKITI 691
+ + +I + + +G Y C H L ++ Y + + +
Sbjct: 58 FWNETDPEFVIDHMDANKAGRYQCQYRIGHYRFRYSDTLELVVTGLYGKPFLSADRGLVL 117
Query: 692 AAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEITNASFAD 751
N+ L C + + + G +L+ + + +
Sbjct: 118 MPGENISLTC--SSAHIPFDRFSLAKEG------ELSLPQHQSGE-HPANFSLGPVDLNV 168
Query: 752 AGEYEC 757
+G Y C
Sbjct: 169 SGIYRC 174
Score = 61.0 bits (148), Expect = 2e-10
Identities = 30/185 (16%), Positives = 60/185 (32%), Gaps = 17/185 (9%)
Query: 484 SIQAEPNFTIPLTDKHMDNQADLTWTCEA-FGVPDVTYSWFRNGELLNSETLPLEDQDRY 542
I A+ + IPL + C+A +N + + ++
Sbjct: 11 FISAKSSPVIPLDGS-------VKIQCQAIREAYLTQLMIIKNSTYR-----EIGRRLKF 58
Query: 543 FIQDNV-LTIRYLNPERDPAMYQCRAKNQLKTRYSSAQLRVLTLKPSFKKRP-LESETYA 600
+ + + I +++ YQC+ + S L ++ K +
Sbjct: 59 WNETDPEFVIDHMDAN-KAGRYQCQYRIGHYRFRYSDTLELVVTGLYGKPFLSADRGLVL 117
Query: 601 GEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTA 660
G N+++ C+ P +F K+G + + N + PV + SGIY C
Sbjct: 118 MPGENISLTCSSAHIPFDRFSLAKEGELSLPQHQSGEH-PANFSLGPVDLNVSGIYRCYG 176
Query: 661 TNVHG 665
Sbjct: 177 WYNRS 181
Score = 56.0 bits (135), Expect = 8e-09
Identities = 21/164 (12%), Positives = 40/164 (24%), Gaps = 7/164 (4%)
Query: 317 CDPPTNYPGVNYYWARDYFPNFVEEDKRVFVSYDGALYFSALEQIDAGNYSCNVQSKVSD 376
C ++ + + + D ++ AG Y C +
Sbjct: 30 CQAIREAYLTQLMIIKNSTYREIGRRLKFWNETDPEFVIDHMDANKAGRYQCQYRIGHYR 89
Query: 377 TGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPEAPKAGDKVRLECVAFGYPVPSYNWTRR 436
+ L V L G+ + L C + P ++ +
Sbjct: 90 FRYSDTL-ELVVTGLYGKPFLSADRG------LVLMPGENISLTCSSAHIPFDRFSLAKE 142
Query: 437 GSPLPRNAYFENFNRILTIPNVKVEDQGEYICRASNDRSALESS 480
G ++ V + G Y C +RS S
Sbjct: 143 GELSLPQHQSGEHPANFSLGPVDLNVSGIYRCYGWYNRSPYLWS 186
Score = 49.9 bits (119), Expect = 9e-07
Identities = 21/175 (12%), Positives = 51/175 (29%), Gaps = 16/175 (9%)
Query: 412 KAGDKVRLEC-VAFGYPVPSYNWTRRGSPLP---RNAYFENFNRILTIPNVKVEDQGEYI 467
V+++C + + + R ++ + I ++ G Y
Sbjct: 21 PLDGSVKIQCQAIREAYLTQLMIIKNSTYREIGRRLKFWNETDPEFVIDHMDANKAGRYQ 80
Query: 468 CRASNDRSALESSVTISIQAEPNFTIPLTDKHMDNQA----DLTWTCEAFGVPDVTYSWF 523
C+ S T+ + + P +++ TC + +P +S
Sbjct: 81 CQYRIGHYRFRYSDTLELVVTGLYGKPFLSADRGLVLMPGENISLTCSSAHIPFDRFSLA 140
Query: 524 RNGELLNSETLPLEDQDRYFIQDNVLTIRYLNPERDPAMYQCRAKNQLKTRYSSA 578
+ GEL + E + ++ ++ +Y+C S
Sbjct: 141 KEGELSLPQHQSGEHPANF-------SLGPVDLN-VSGIYRCYGWYNRSPYLWSF 187
Score = 34.1 bits (78), Expect = 0.13
Identities = 15/84 (17%), Positives = 27/84 (32%), Gaps = 15/84 (17%)
Query: 211 DITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVEDRG 270
+I+L+C + P + KE + + F+L P + G
Sbjct: 122 NISLTCSSAHIPFDRFSLAKEG---ELSLPQHQSGEHPANFSLG--------PVDLNVSG 170
Query: 271 SYHCKASNKFG----SIISESVQL 290
Y C S S +++L
Sbjct: 171 IYRCYGWYNRSPYLWSFPSNALEL 194
Score = 30.6 bits (69), Expect = 1.7
Identities = 20/180 (11%), Positives = 45/180 (25%), Gaps = 32/180 (17%)
Query: 213 TLSCYA-GGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVEDRGS 271
+ C A K ++ +D F + G
Sbjct: 27 KIQCQAIREAYLTQLMIIKNSTYREIGRRLKFWNETDPEFVID--------HMDANKAGR 78
Query: 272 YHCKASNKFG-SIISESVQLAFGFIGEFNLKRAPEIGNQNWGKAMFCDPPT------NYP 324
Y C+ S++++L L P + M + + + P
Sbjct: 79 YQCQYRIGHYRFRYSDTLELV-----VTGLYGKPFLSADRGLVLMPGENISLTCSSAHIP 133
Query: 325 GVNYYWARDYFPNFVEEDKRVFVSYDGALYFSALEQIDAGNYSC--------NVQSKVSD 376
+ A++ + + + ++ +G Y C + S S+
Sbjct: 134 FDRFSLAKE---GELSLPQHQSGEHPANFSLGPVDLNVSGIYRCYGWYNRSPYLWSFPSN 190
Score = 28.7 bits (64), Expect = 6.9
Identities = 20/105 (19%), Positives = 34/105 (32%), Gaps = 15/105 (14%)
Query: 687 PKITIAAH--------RNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINID 738
P I+A +++++C A E L I ++ R N
Sbjct: 8 PMPFISAKSSPVIPLDGSVKIQCQAIREAYLTQLMIIKNSTYREIGR-----RLKFWNET 62
Query: 739 GGLLEITNASFADAGEYECVVKSTVG--KISTKTTVIVEGPPGLP 781
I + AG Y+C + + S ++V G G P
Sbjct: 63 DPEFVIDHMDANKAGRYQCQYRIGHYRFRYSDTLELVVTGLYGKP 107
>3n1f_C Cell adhesion molecule-related/DOWN-regulated BY; binding sites,
calcium, cell adhesion molecules, cell cycle cell LINE,
conserved sequence; 1.60A {Homo sapiens} PDB: 3d1m_C
3n1q_C 3n1m_C 3n1g_C 3n1p_C
Length = 102
Score = 58.5 bits (142), Expect = 9e-11
Identities = 17/77 (22%), Positives = 32/77 (41%), Gaps = 1/77 (1%)
Query: 902 LSISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETLKEYGNVGIAVVRIPSEFYYTEYE 961
+ + W +P N P + I++R D++ S+ ++ I T Y+
Sbjct: 21 IMLKWTYIPSSNNNTPIQGFYIYYRP-TDSDNDSDYKRDVVEGSKQWHMIGHLQPETSYD 79
Query: 962 VKVQAINDVGPGPESEV 978
+K+Q N+ G S V
Sbjct: 80 IKMQCFNEGGESEFSNV 96
Score = 54.3 bits (131), Expect = 3e-09
Identities = 22/101 (21%), Positives = 36/101 (35%), Gaps = 11/101 (10%)
Query: 777 PPGLPGGVQVVEVHKTSATIQWT---DGATNGRPITHYKIIARTNWNSTWFNVSEHVIGK 833
P P V T ++WT N PI + I R + + V+
Sbjct: 4 PITGPHIAYTEAVSDTQIMLKWTYIPSSNNNT-PIQGFYIYYRPTDSDNDSDYKRDVVE- 61
Query: 834 EVDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSP 874
++ I + L P ++Y+ K+ NE G E S+
Sbjct: 62 -----GSKQWHMIGH-LQPETSYDIKMQCFNEGGESEFSNV 96
>1sb2_B Rhodocetin beta subunit; C-type lectin, domain swapping, toxin;
1.90A {Calloselasma rhodostoma} SCOP: d.169.1.1 PDB:
3gpr_B
Length = 129
Score = 59.4 bits (144), Expect = 1e-10
Identities = 18/91 (19%), Positives = 40/91 (43%), Gaps = 9/91 (9%)
Query: 26 ELRCPQHWVQYRDSCYRFVKSPLKTRNDAKLNCKS--LDSDLANVNDADEHGFIMYQLFW 83
+ RCP W + CY+ K KT +A+ C + L ++ A E F+ +
Sbjct: 1 DFRCPTTWSASKLYCYKPFKEK-KTWIEAERFCAKQAENGHLVSIGSAAEADFL-DLVIV 58
Query: 84 QDPQRRKWYF--GGTQQSPNLWVNEDGTNLN 112
+ ++++ G T+++ +G +++
Sbjct: 59 VNFDKQRYRAWTGLTERN---LKWTNGASVS 86
>2djs_A Ephrin type-B receptor 1; tyrosine-protein kinase receptor EPH-2,
NET, HEK6, ELK, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: b.1.2.1
Length = 108
Score = 58.6 bits (142), Expect = 1e-10
Identities = 19/100 (19%), Positives = 30/100 (30%), Gaps = 10/100 (10%)
Query: 775 EGPPGLPGGVQVVEVHKTSATIQWTDGATNGRPITHYKIIARTNWNSTWFNVSEHVIGKE 834
P + V S T+ W I Y+I ++ + +
Sbjct: 5 SSGPSTVPIMHQVSATMRSITLSWPQPEQPNGIILDYEIRYYEKEHNEFNSSM------- 57
Query: 835 VDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSP 874
+ A I+ L P Y +V A GYG+ S
Sbjct: 58 --ARSQTNTARIDG-LRPGMVYVVQVRARTVAGYGKFSGK 94
Score = 47.4 bits (113), Expect = 8e-07
Identities = 20/79 (25%), Positives = 32/79 (40%), Gaps = 10/79 (12%)
Query: 902 LSISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETLKEYGNVGIAVVR--IPSEFYYTE 959
+++SW P E+ N + Y+I + +K EF S + A + P
Sbjct: 24 ITLSWPQ-P-EQPNGIILDYEIRYYEKEHNEFNSSMAR--SQTNTARIDGLRP----GMV 75
Query: 960 YEVKVQAINDVGPGPESEV 978
Y V+V+A G G S
Sbjct: 76 YVVQVRARTVAGYGKFSGK 94
>2d3v_A Leukocyte immunoglobulin-like receptor subfamily A member 5 isoform
1; immunoglobulin-like fold, immune system; 1.85A {Homo
sapiens}
Length = 196
Score = 61.0 bits (148), Expect = 1e-10
Identities = 31/179 (17%), Positives = 59/179 (32%), Gaps = 17/179 (9%)
Query: 586 KPSFKKRPLESETYAGEGGNVTIFC--NPEAAPKPKFVWKKDGNIIGSGGRRKIFENG-- 641
K + E + G +VTI C EA ++ K+G+ + +
Sbjct: 5 KATLW---AEPGSVISRGNSVTIRCQGTLEAQ---EYRLVKEGSPEPWDTQNPLEPKNKA 58
Query: 642 NLLISPVSRDDSGIYSCTATNVHGMDESKGRLIVLHGPSYYE---QLPPKITIAAHRNLQ 698
I ++ +G Y C + G E L ++ Y + P + + N+
Sbjct: 59 RFSIPSMTEHHAGRYRCYYYSPAGWSEPSDPLELVVTGFYNKPTLSALPSPVVTSGENVT 118
Query: 699 LRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEITNASFADAGEYEC 757
L+C + +I T G + L+ TP+ L + + + C
Sbjct: 119 LQCGSRLR---FDRFILTEEGDHKLSWTLDSQLTPS-GQFQALFPVGPVTPSHRWMLRC 173
Score = 60.3 bits (146), Expect = 2e-10
Identities = 30/190 (15%), Positives = 57/190 (30%), Gaps = 24/190 (12%)
Query: 484 SIQAEPNFTIPLTDKHMDNQADLTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYF 543
++ AEP I + +T C+ + Y + G P + Q+
Sbjct: 7 TLWAEPGSVISRGNS-------VTIRCQG-TLEAQEYRLVKEGS-----PEPWDTQNPLE 53
Query: 544 IQD-NVLTIRYLNPERDPAMYQCRAKNQLKTRYSSAQLRVLTLKPSFKKRPL--ESETYA 600
++ +I + Y+C + S L L + + K L
Sbjct: 54 PKNKARFSIPSMTEH-HAGRYRCYYYSPAGWSEPSDPLE-LVVTGFYNKPTLSALPSPVV 111
Query: 601 GEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENG-----NLLISPVSRDDSGI 655
G NVT+ C +F+ ++G+ S + PV+ +
Sbjct: 112 TSGENVTLQCGSRLRF-DRFILTEEGDHKLSWTLDSQLTPSGQFQALFPVGPVTPSHRWM 170
Query: 656 YSCTATNVHG 665
C + H
Sbjct: 171 LRCYGSRRHI 180
Score = 44.5 bits (105), Expect = 4e-05
Identities = 28/163 (17%), Positives = 51/163 (31%), Gaps = 11/163 (6%)
Query: 414 GDKVRLECVAFGYPVPSYNWTRRGSPLP---RNAYFENFNRILTIPNVKVEDQGEYICRA 470
G+ V + C Y + GSP P +N +IP++ G Y C
Sbjct: 19 GNSVTIRCQG-TLEAQEYRLVKEGSPEPWDTQNPLEPKNKARFSIPSMTEHHAGRYRCYY 77
Query: 471 SNDRSALESSVTISIQAEPNFTIP----LTDKHMDNQADLTWTCEAFGVPDVTYSWFRNG 526
+ E S + + + P L + + ++T C + + + G
Sbjct: 78 YSPAGWSEPSDPLELVVTGFYNKPTLSALPSPVVTSGENVTLQCGS-RLRFDRFILTEEG 136
Query: 527 ELLNSETLPLEDQDRYFIQDNVLTIRYLNPERDPAMYQCRAKN 569
+ S TL + Q + + P M +C
Sbjct: 137 DHKLSWTLDSQLTPSGQFQAL-FPVGPVTPS-HRWMLRCYGSR 177
Score = 44.1 bits (104), Expect = 6e-05
Identities = 24/178 (13%), Positives = 42/178 (23%), Gaps = 32/178 (17%)
Query: 317 CDPPTNYPGVNYYWARDYFPNFVEEDKRVFVSYDGALYFSALEQIDAGNYSCNVQSKVSD 376
C Y ++ P + + ++ + AG Y C S
Sbjct: 26 CQGTL--EAQEYRLVKEGSPEPWDTQNPLEPKNKARFSIPSMTEHHAGRYRCYYYS---- 79
Query: 377 TGRNGPFFPLKVFPHSNFQQLKFPNNFPKTF-----PEAPKAGDKVRLECVAFGYPV--- 428
P S+ +L + K +G+ V L+C +
Sbjct: 80 --------PAGWSEPSDPLELVVTGFYNKPTLSALPSPVVTSGENVTLQCGSRLRFDRFI 131
Query: 429 ------PSYNWTRRGSPLPRNAYFENFNRILTIPNVKVEDQGEYICRASNDRSALESS 480
+WT P + F + V + C S S
Sbjct: 132 LTEEGDHKLSWTLDSQLTPSGQFQALF----PVGPVTPSHRWMLRCYGSRRHILQVWS 185
Score = 31.4 bits (71), Expect = 0.84
Identities = 23/169 (13%), Positives = 40/169 (23%), Gaps = 29/169 (17%)
Query: 212 ITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVEDRGS 271
+T+ C G Y KE + N ++P + RF++ G
Sbjct: 22 VTIRC-QGTLEAQEYRLVKEGSPEPWDTQNPLEPKNKARFSIP--------SMTEHHAGR 72
Query: 272 YHCKASNKFG-SIISESVQLAFGFIGEFNLKRAPEIGNQNWGKAMFCDPPT-----NYPG 325
Y C + G S S+ ++L P + + T
Sbjct: 73 YRCYYYSPAGWSEPSDPLELVV-----TGFYNKPTLSALPSPVVTSGENVTLQCGSRLRF 127
Query: 326 VNYYWARDYFPNFVEEDKRVFVSYDGALYFSALEQI------DAGNYSC 368
+ + F AL + C
Sbjct: 128 DRFILTEEGDHKLSWTLDSQLTPSGQ---FQALFPVGPVTPSHRWMLRC 173
Score = 29.5 bits (66), Expect = 4.5
Identities = 16/86 (18%), Positives = 27/86 (31%), Gaps = 15/86 (17%)
Query: 687 PKITIAAH--------RNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINID 738
K T+ A ++ +RC E Y G + + + + P +
Sbjct: 4 SKATLWAEPGSVISRGNSVTIRCQGTLE---AQEYRLVKEG----SPEPWDTQNPLEPKN 56
Query: 739 GGLLEITNASFADAGEYECVVKSTVG 764
I + + AG Y C S G
Sbjct: 57 KARFSIPSMTEHHAGRYRCYYYSPAG 82
Score = 29.1 bits (65), Expect = 5.7
Identities = 11/86 (12%), Positives = 20/86 (23%), Gaps = 16/86 (18%)
Query: 212 ITLSCYAGGYPNPSYEWFKE---DYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVED 268
+TL C + +E F + P
Sbjct: 117 VTLQCG-SRLRFDRFILTEEGDHKLSWTLDSQLTPSGQFQALFPVG--------PVTPSH 167
Query: 269 RGSYHCKASNKFG----SIISESVQL 290
R C S + S S+ +++
Sbjct: 168 RWMLRCYGSRRHILQVWSEPSDLLEI 193
>2dlh_A Receptor-type tyrosine-protein phosphatase delta; protein-tyrosine
phosphatase delta, R-PTP-delta, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 121
Score = 58.2 bits (141), Expect = 2e-10
Identities = 23/113 (20%), Positives = 37/113 (32%), Gaps = 9/113 (7%)
Query: 867 GYGEPSSPSPQYNTPADKPYQAPSRIGGGGGKIGDLSISWEPLPREKQNAPNIYYKIFWR 926
G S P T P AP + + + W+ P E+ N Y++++
Sbjct: 1 GSSGSSGPVLTQ-TSEQAPSSAPRDVQARMLSSTTILVQWKE-P-EEPNGQIQGYRVYYT 57
Query: 927 KKNDTEFQSETLKEYGNVGIAVVR--IPSEFYYTEYEVKVQAINDVGPGPESE 977
+ + I + +P Y VKV A +G GP S
Sbjct: 58 MDPTQHVNNWMKHNVADSQITTIGNLVP----QKTYSVKVLAFTSIGDGPLSS 106
Score = 50.9 bits (122), Expect = 7e-08
Identities = 31/115 (26%), Positives = 44/115 (38%), Gaps = 14/115 (12%)
Query: 777 PPGLPGGVQVVEVHKTSATIQWTD-GATNGRPITHYKIIARTNWNSTWFNVSEHVIGKEV 835
P P VQ + T+ +QW + NG+ I Y++ + N +H +
Sbjct: 18 PSSAPRDVQARMLSSTTILVQWKEPEEPNGQ-IQGYRVYYTMDPTQHVNNWMKHNVADSQ 76
Query: 836 DRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPSPQYNTPADKPYQAPS 890
+I N LVP TY KV+A +G G SS Q T PS
Sbjct: 77 -------ITTIGN-LVPQKTYSVKVLAFTSIGDGPLSSDI-QVITQTGSG---PS 119
>1umr_A Convulxin alpha, CVX alpha; lectin, C-type lectin, platelet,
sugar-binding protein, activator, snake venom; 2.40A
{Crotalus durissus terrificus} SCOP: d.169.1.1 PDB:
1uos_A
Length = 135
Score = 58.6 bits (142), Expect = 2e-10
Identities = 18/93 (19%), Positives = 33/93 (35%), Gaps = 9/93 (9%)
Query: 27 LRCPQHWVQYRDSCYRFVKSPLKTRNDAKLNCKSL--DSDLANVNDADEHGFIMYQLFWQ 84
L CP W Y CYR DA+ C + L ++ A E F+ + Q
Sbjct: 2 LHCPSDWYYYDQHCYRIFNEE-MNWEDAEWFCTKQAKGAHLVSIKSAKEADFV-AWMVTQ 59
Query: 85 DPQRRKWYF-----GGTQQSPNLWVNEDGTNLN 112
+ + + ++ DG++++
Sbjct: 60 NIEESFSHVSIGLRVQNKEKQCSTKWSDGSSVS 92
>4f80_A Butyrophilin subfamily 3 member A1; B7 superfamily, CD277, immune
system; 1.94A {Homo sapiens} PDB: 4f9l_A* 4f9p_A 4f8t_A
4f8q_A
Length = 226
Score = 60.9 bits (147), Expect = 2e-10
Identities = 23/146 (15%), Positives = 45/146 (30%), Gaps = 12/146 (8%)
Query: 450 NRILTIPNVKVEDQGEYICRASNDRSALESSVTISIQAEPNFTIPLTDKHMDNQADLTWT 509
L I NV D G+Y+C + ++ V + + A + D +
Sbjct: 82 KAALRIHNVTASDSGKYLCYFQDGDFYEKALVELKVAA--LGSDLHVDVKGYKDGGIHLE 139
Query: 510 CEAFG-VPDVTYSWFRNG--ELLNSETLPLEDQDRYFIQDNVLTIRYLNPERDPAMYQCR 566
C + G P W N + E + D + + +R C
Sbjct: 140 CRSTGWYPQPQIQWSNNKGENIPTVEAPVVADGVGLYAVAASVIMR----GSSGEGVSCT 195
Query: 567 AKNQLKTRYSSAQLRVLTLKPSFKKR 592
++ L +A +++ F +
Sbjct: 196 IRSSLLGLEKTA---SISIADPFFRS 218
Score = 55.9 bits (134), Expect = 1e-08
Identities = 38/192 (19%), Positives = 61/192 (31%), Gaps = 22/192 (11%)
Query: 318 DPPTNYPGVNYYWARDYFPNFV-------EEDKRVFVSYDGALYFSALEQIDAGNYS--- 367
P + + W V E + R Y G + I AG +
Sbjct: 29 FPTMSAETMELKWVSSSLRQVVNVYADGKEVEDRQSAPYRGRTSILR-DGITAGKAALRI 87
Query: 368 CNVQSKVSDTGRNGPFFPLKVFPHSNFQQLKFPNNFPKTF-PEAPKAGDKVRLECVAFG- 425
NV SD+G+ +F F +LK + LEC + G
Sbjct: 88 HNVT--ASDSGKYLCYFQDGDFYEKALVELKVAALGSDLHVDVKGYKDGGIHLECRSTGW 145
Query: 426 YPVPSYNWT-RRGSPLP--RNAYFENFNRILTIP---NVKVEDQGEYICRASNDRSALES 479
YP P W+ +G +P + + + ++ C + LE
Sbjct: 146 YPQPQIQWSNNKGENIPTVEAPVVADGVGLYAVAASVIMRGSSGEGVSCTIRSSLLGLEK 205
Query: 480 SVTISIQAEPNF 491
+ +ISI A+P F
Sbjct: 206 TASISI-ADPFF 216
Score = 49.7 bits (118), Expect = 1e-06
Identities = 30/201 (14%), Positives = 53/201 (26%), Gaps = 30/201 (14%)
Query: 211 DITLSCY---AGGYPNPSYEWFKED-------YVQDRLVANLIDPLSDKRFTLSGGN--- 257
D L C+ +W Y + V + R ++
Sbjct: 21 DADLPCHLFPTMSAETMELKWVSSSLRQVVNVYADGKEVEDRQSAPYRGRTSILRDGITA 80
Query: 258 ----LIINDPRQVEDRGSYHCKASNKFGSIISESVQLAFGFIGEFNLKRAPEIGNQNWGK 313
L I++ D G Y C + E + + G ++ G
Sbjct: 81 GKAALRIHNV-TASDSGKYLCYFQDGDF---YEKALVELKVAALGSDLHVDVKGYKDGGI 136
Query: 314 AMFCDPPTNYPGVNYYWARDYFPNFVEEDKRVFVSYDGALYFSA---LEQIDAGNYSCNV 370
+ C YP W+ + N + V G +A + SC +
Sbjct: 137 HLECRSTGWYPQPQIQWSNNKGENIPTVEAPVVADGVGLYAVAASVIMRGSSGEGVSCTI 196
Query: 371 QSKVSDTGRNG------PFFP 385
+S + + PFF
Sbjct: 197 RSSLLGLEKTASISIADPFFR 217
Score = 46.6 bits (110), Expect = 1e-05
Identities = 34/233 (14%), Positives = 67/233 (28%), Gaps = 50/233 (21%)
Query: 576 SSAQLRVLTLKPSFKKRPLESETYAGEGGNVTIFC--NPEAAPKPKFV-WKKDGN----- 627
+ Q VL A G + + C P + + + W
Sbjct: 1 ADLQFSVLGPSGPIL---------AMVGEDADLPCHLFPTMSAETMELKWVSSSLRQVVN 51
Query: 628 ------------IIGSGGRRKIFEN----GN--LLISPVSRDDSGIYSCTATNVHGMDES 669
GR I + G L I V+ DSG Y C + +++
Sbjct: 52 VYADGKEVEDRQSAPYRGRTSILRDGITAGKAALRIHNVTASDSGKYLCYFQDGDFYEKA 111
Query: 670 KGRLIVLHGPSYYEQLPPKITIAAHR--NLQLRCSAHTEELLDVAYIWTHNGVRIGNMDL 727
L V S + + ++ + L C + W++N +
Sbjct: 112 LVELKVAALGS-----DLHVDVKGYKDGGIHLECRST-GWYPQPQIQWSNNKGEN----I 161
Query: 728 NELETPNINIDGGLLEIT---NASFADAGEYECVVKSTVGKISTKTTVIVEGP 777
+E P + GL + + C ++S++ + ++ + P
Sbjct: 162 PTVEAPVVADGVGLYAVAASVIMRGSSGEGVSCTIRSSLLGLEKTASISIADP 214
Score = 36.2 bits (83), Expect = 0.030
Identities = 16/102 (15%), Positives = 28/102 (27%), Gaps = 15/102 (14%)
Query: 742 LEITNASFADAGEYECVVKSTVGKISTKTTVIVEGPPGLPGGVQVVEVHKT--------- 792
L I N + +D+G+Y C + + V
Sbjct: 85 LRIHNVTASDSGKYLCYFQDGDFYEKALVELKVAALGSDLHVDVKGYKDGGIHLECRSTG 144
Query: 793 ---SATIQWTDGATNGRPITHYKIIARTNWNSTWFNVSEHVI 831
IQW++ G I + + + V+ VI
Sbjct: 145 WYPQPQIQWSNN--KGENIPTVEAPVVADGVGL-YAVAASVI 183
>2ee3_A Collagen alpha-1(XX) chain; KIAA1510, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 108
Score = 57.4 bits (139), Expect = 3e-10
Identities = 17/114 (14%), Positives = 30/114 (26%), Gaps = 14/114 (12%)
Query: 777 PPGLPGGVQVVEVHKTSATIQWTDGATNGRPITHYKIIARTNWNSTWFNVSEHVIGKEVD 836
P + +V +A + W RP+ ++ ++ E
Sbjct: 7 GLAPPRHLGFSDVSHDAARVFWEGAP---RPVRLVRVTYVSSEGGHSGQT-------EAP 56
Query: 837 RYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPSPQYNTPADKPYQAPS 890
A + L +TY +V G + A P PS
Sbjct: 57 G--NATSAMLGP-LSSSTTYTVRVTCLYPGGGSSTLTGRVT-TKKAPSPSSGPS 106
Score = 38.6 bits (90), Expect = 0.001
Identities = 12/79 (15%), Positives = 20/79 (25%), Gaps = 13/79 (16%)
Query: 902 LSISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETLKEYGNVGIAVVR--IPSEFYYTE 959
+ WE P P ++ + GN A++ T
Sbjct: 24 ARVFWEGAP-----RPVRLVRVTYVSSEGGHSGQTEAP--GNATSAMLGPLSS----STT 72
Query: 960 YEVKVQAINDVGPGPESEV 978
Y V+V + G
Sbjct: 73 YTVRVTCLYPGGGSSTLTG 91
>3so5_A LIG-3, leucine-rich repeats and immunoglobulin-like DOMA protein 3;
structural genomics, joint center for struct genomics,
JCSG; HET: MLY MSE; 1.70A {Mus musculus}
Length = 112
Score = 57.8 bits (139), Expect = 3e-10
Identities = 18/105 (17%), Positives = 31/105 (29%), Gaps = 10/105 (9%)
Query: 190 PYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNP--SYEWFKEDYV--QDRLVANLIDP 245
P QP +D++ +C A + ++ W ++ +
Sbjct: 11 PQITVQPETQSAIXG-----SDVSFTCSAASSSDSPMTFAWXXDNEALQDAEMENYAHLR 65
Query: 246 LSDKRFTLSGGNLIINDPRQVEDRGSYHCKASNKFGSIISESVQL 290
L + + + G Y C SN FGS S L
Sbjct: 66 AQGGELMEYTTILRLRNV-EFTSEGXYQCVISNHFGSSYSVXAXL 109
Score = 55.1 bits (132), Expect = 2e-09
Identities = 19/103 (18%), Positives = 31/103 (30%), Gaps = 16/103 (15%)
Query: 587 PSFKKRPLESETYAGEGGNVTIFCNPEAAPKP--KFVWKKDGNII-----------GSGG 633
P +P A G +V+ C+ ++ F W D + + G
Sbjct: 11 PQITVQP--ETQSAIXGSDVSFTCSAASSSDSPMTFAWXXDNEALQDAEMENYAHLRAQG 68
Query: 634 RRKIFENGNLLISPVSRDDSGIYSCTATNVHGMDESKG-RLIV 675
+ L + V G Y C +N G S L +
Sbjct: 69 GELMEYTTILRLRNVEFTSEGXYQCVISNHFGSSYSVXAXLTI 111
Score = 53.5 bits (128), Expect = 8e-09
Identities = 15/73 (20%), Positives = 22/73 (30%), Gaps = 14/73 (19%)
Query: 414 GDKVRLECVAFGYPVP--SYNWTRRGSPLP------------RNAYFENFNRILTIPNVK 459
G V C A ++ W L + + IL + NV+
Sbjct: 25 GSDVSFTCSAASSSDSPMTFAWXXDNEALQDAEMENYAHLRAQGGELMEYTTILRLRNVE 84
Query: 460 VEDQGEYICRASN 472
+G Y C SN
Sbjct: 85 FTSEGXYQCVISN 97
Score = 50.5 bits (120), Expect = 8e-08
Identities = 14/95 (14%), Positives = 34/95 (35%), Gaps = 6/95 (6%)
Query: 686 PPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLN-----ELETPNINIDGG 740
P + ++ CSA + + + W + + + ++ + +
Sbjct: 17 PETQSAIXGSDVSFTCSAASSSDSPMTFAWXXDNEALQDAEMENYAHLRAQGGELMEYTT 76
Query: 741 LLEITNASFADAGEYECVVKSTVGKI-STKTTVIV 774
+L + N F G Y+CV+ + G S + +
Sbjct: 77 ILRLRNVEFTSEGXYQCVISNHFGSSYSVXAXLTI 111
Score = 48.5 bits (115), Expect = 4e-07
Identities = 21/102 (20%), Positives = 37/102 (36%), Gaps = 9/102 (8%)
Query: 489 PNFTIPLTDKHMDNQADLTWTCEAFGVPD--VTYSWFRNGELLNSETLP-----LEDQDR 541
P T+ + +D+++TC A D +T++W + E L +
Sbjct: 11 PQITVQPETQSAIXGSDVSFTCSAASSSDSPMTFAWXXDNEALQDAEMENYAHLRAQGGE 70
Query: 542 YFIQDNVLTIRYLNPERDPAMYQCRAKNQLKTRYSS-AQLRV 582
+L +R + YQC N + YS A L +
Sbjct: 71 LMEYTTILRLRNVEFT-SEGXYQCVISNHFGSSYSVXAXLTI 111
>2ocf_D Fibronectin; estrogen receptor, LBD, monobody, estradiol,
hormone-growth complex; HET: CME EST; 2.95A {Homo
sapiens}
Length = 121
Score = 58.0 bits (140), Expect = 3e-10
Identities = 21/109 (19%), Positives = 31/109 (28%), Gaps = 12/109 (11%)
Query: 767 STKTTVIVEGPPGLPGGVQVVEVHKTSATIQWTDGATNGRPITHYKIIARTNWNSTWFNV 826
+ +P ++VV TS I W A + +Y+I ++ V
Sbjct: 18 KGENLYFQGSVSDVPTKLEVVAATPTSLLISWDAPAV---TVRYYRITYGETGGNSP--V 72
Query: 827 SEHVIGKEVDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPS 875
E + T I L P Y V A L S
Sbjct: 73 QEFTVPGSKSTAT------ISG-LKPGVDYTITVYAVTGLRLMLAGSKP 114
Score = 32.9 bits (75), Expect = 0.13
Identities = 15/78 (19%), Positives = 25/78 (32%), Gaps = 12/78 (15%)
Query: 902 LSISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETLKEYGNVGIAVVR--IPSEFYYTE 959
L ISW+ P YY+I + + E G+ A + P +
Sbjct: 45 LLISWDA-P----AVTVRYYRITYGETGGNSPVQE-FTVPGSKSTATISGLKP----GVD 94
Query: 960 YEVKVQAINDVGPGPESE 977
Y + V A+ +
Sbjct: 95 YTITVYAVTGLRLMLAGS 112
>2dmk_A Midline 2 isoform 2; midline defect 2, tripartite motif protein 1,
midin-2, ring finger protein 60, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 127
Score = 58.0 bits (140), Expect = 3e-10
Identities = 17/116 (14%), Positives = 37/116 (31%), Gaps = 8/116 (6%)
Query: 776 GPPGLPGGVQVVEVHKTSATIQWTDGATNGRPITHYKIIARTNWNSTWFNVSEHVIGKEV 835
PP + ++ + T+ W + I+ Y++ F + + +
Sbjct: 17 NPPSIR--EELCTASHDTITVHWISD--DEFSISSYELQYTIFTGQANFISLYNSVDSWM 72
Query: 836 DRYTGRK-EASIENVLVPWSTYEFKVIAGNELGYGEPSSPSPQYNTPADKPYQAPS 890
++ ++ L + Y F V A N+ G + T + PS
Sbjct: 73 IVPNIKQNHYTVHG-LQSGTRYIFIVKAINQAGSRNSEPTRLK--TNSQPFKSGPS 125
Score = 33.7 bits (77), Expect = 0.073
Identities = 12/84 (14%), Positives = 21/84 (25%), Gaps = 12/84 (14%)
Query: 902 LSISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETLKEYGNVGIAVVRIPSEFY----- 956
+++ W Y++ + + + V I Y
Sbjct: 33 ITVHWIS----DDEFSISSYELQYTIFTGQANFISLYNSVDSW-MIVPNIKQNHYTVHGL 87
Query: 957 --YTEYEVKVQAINDVGPGPESEV 978
T Y V+AIN G
Sbjct: 88 QSGTRYIFIVKAINQAGSRNSEPT 111
>1wk0_A KIAA0970 protein; fibronectin type III domain, structural genomics,
riken structural genomics/proteomics initiative, RSGI,
unknown function; NMR {Homo sapiens} SCOP: b.1.2.1
Length = 137
Score = 58.5 bits (141), Expect = 3e-10
Identities = 22/141 (15%), Positives = 44/141 (31%), Gaps = 21/141 (14%)
Query: 764 GKISTKTTVIVEGPPGLPGGVQVVEVHKTSATIQWT---------DGATNGRPITHYKII 814
G + T E ++ + + W+ ++ + Y+++
Sbjct: 4 GSSGDEETKAFEALLSNIVKPVASDIQARTVVLTWSPPSSLINGETDESSVPELYGYEVL 63
Query: 815 ARTNWNSTWFNVSEHVIGKEVDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSP 874
+ + +G+E ++ + L P Y KV A G PS
Sbjct: 64 ISSTGKDGKY--KSVYVGEET-------NITLND-LKPAMDYHAKVQAEYNSIKGTPSEA 113
Query: 875 SPQYNTPADKP-YQAPSRIGG 894
+ T + +P P RI G
Sbjct: 114 E-IFTTLSCEPDIPNPPRISG 133
Score = 36.1 bits (83), Expect = 0.013
Identities = 13/84 (15%), Positives = 22/84 (26%), Gaps = 11/84 (13%)
Query: 902 LSISWEP-------LPREKQNAPNIYYKIFWRKKNDTEFQSETLKEYGNVGIAVVRIPSE 954
+ ++W P E Y++ K + +
Sbjct: 34 VVLTWSPPSSLINGETDESSVPELYGYEVLISSTGK----DGKYKSVYVGEETNITLNDL 89
Query: 955 FYYTEYEVKVQAINDVGPGPESEV 978
+Y KVQA + G SE
Sbjct: 90 KPAMDYHAKVQAEYNSIKGTPSEA 113
>1oll_A NK receptor; immune system/receptor, NK cell triggering receptor,
immune system, IG domain, cytotoxicity, C2-type IG-like
domains; 1.93A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4
Length = 188
Score = 59.4 bits (144), Expect = 3e-10
Identities = 29/182 (15%), Positives = 51/182 (28%), Gaps = 24/182 (13%)
Query: 584 TL-KPSFKKRPLESETYAGEGGNVTIFC--NPEAAPKPKFVWKKDGNIIGSGGRRKIFEN 640
TL KP E + VTI C N A ++ +G++ +
Sbjct: 1 TLPKPFIW---AEPHFMVPKEKQVTICCQGNYGAV---EYQLHFEGSLFAVDRPKPPERI 54
Query: 641 --GNLLISPVSRDDSGIYSCTATNVHGMDE-SKGRLIVLHGPSYYEQL--PPKITIAAHR 695
I ++ +G YSC E S +V+ L P + +
Sbjct: 55 NKVKFYIPDMNSRMAGQYSCIYRVGELWSEPSNLLDLVVTEMYDTPTLSVHPGPEVISGE 114
Query: 696 NLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEITNASFADAGEY 755
+ C T ++ G + ++ + + A G Y
Sbjct: 115 KVTFYCRLDTA---TSMFLLLKEG------RSSHVQRGY-GKVQAEFPLGPVTTAHRGTY 164
Query: 756 EC 757
C
Sbjct: 165 RC 166
Score = 57.5 bits (139), Expect = 2e-09
Identities = 35/182 (19%), Positives = 55/182 (30%), Gaps = 20/182 (10%)
Query: 484 SIQAEPNFTIPLTDKHMDNQADLTWTCEAFGVPDVTYSWFRNGELLNSETL-PLEDQDRY 542
I AEP+F +P + +T C+ V Y G L + P E ++
Sbjct: 6 FIWAEPHFMVPKEKQ-------VTICCQG-NYGAVEYQLHFEGSLFAVDRPKPPERINK- 56
Query: 543 FIQDNVLTIRYLNPERDPAMYQCRAKNQLKTRYSSAQLRVLTLKPSFKKRPLES--ETYA 600
I +N Y C + S L L + + L
Sbjct: 57 ----VKFYIPDMNSR-MAGQYSCIYRVGELWSEPSNLLD-LVVTEMYDTPTLSVHPGPEV 110
Query: 601 GEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTA 660
G VT +C + A F+ K+G + + PV+ G Y C
Sbjct: 111 ISGEKVTFYCRLDTAT-SMFLLLKEGRSSHVQRGYGKVQ-AEFPLGPVTTAHRGTYRCFG 168
Query: 661 TN 662
+
Sbjct: 169 SY 170
Score = 44.0 bits (104), Expect = 5e-05
Identities = 20/161 (12%), Positives = 41/161 (25%), Gaps = 17/161 (10%)
Query: 414 GDKVRLECVAFGYPVPSYNWTRRGSPLP---RNAYFENFNRILTIPNVKVEDQGEYICRA 470
+V + C Y Y GS IP++ G+Y C
Sbjct: 18 EKQVTICCQG-NYGAVEYQLHFEGSLFAVDRPKPPERINKVKFYIPDMNSRMAGQYSCIY 76
Query: 471 SNDRSALESSVTISIQAEPNFTIP----LTDKHMDNQADLTWTCEAFGVPDVTYSWFRNG 526
E S + + + P + + +T+ C + + G
Sbjct: 77 RVGELWSEPSNLLDLVVTEMYDTPTLSVHPGPEVISGEKVTFYCRL-DTATSMFLLLKEG 135
Query: 527 ELLNSETLPLEDQDRYFIQDNVLTIRYLNPERDPAMYQCRA 567
+ + + Q + + + Y+C
Sbjct: 136 RSSHVQRGYGKVQAEF-------PLGPVTTA-HRGTYRCFG 168
Score = 42.1 bits (99), Expect = 2e-04
Identities = 26/178 (14%), Positives = 41/178 (23%), Gaps = 27/178 (15%)
Query: 317 CDPPTNYPGVNYYWARDYFPNFVEEDKRVFVSYDGALYFSALEQIDAGNYSCNVQSKVSD 376
C V Y + V+ K Y + AG YSC +
Sbjct: 25 CQGNY--GAVEYQLHFEGSLFAVDRPKPPERINKVKFYIPDMNSRMAGQYSCIYRV---- 78
Query: 377 TGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPEAP-----KAGDKVRLECVAFGYPVPSY 431
SN L + +G+KV C +
Sbjct: 79 --------GELWSEPSNLLDLVVTEMYDTPTLSVHPGPEVISGEKVTFYCRLDTATS-MF 129
Query: 432 NWTRRGSPLPRNAYFENFNRILTIPNVKVEDQGEYICRASNDRS-------ALESSVT 482
+ G + + V +G Y C S + ++ VT
Sbjct: 130 LLLKEGRSSHVQRGYGKVQAEFPLGPVTTAHRGTYRCFGSYNNHAWSFPSEPVKLLVT 187
Score = 35.6 bits (82), Expect = 0.043
Identities = 13/80 (16%), Positives = 23/80 (28%), Gaps = 10/80 (12%)
Query: 212 ITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVEDRGS 271
+T+ C G Y Y+ E + + ++ +F + G
Sbjct: 21 VTICCQ-GNYGAVEYQLHFEGSLFAVDRPKPPERINKVKFYIP--------DMNSRMAGQ 71
Query: 272 YHCKASNKFG-SIISESVQL 290
Y C S S + L
Sbjct: 72 YSCIYRVGELWSEPSNLLDL 91
Score = 30.6 bits (69), Expect = 1.7
Identities = 15/86 (17%), Positives = 24/86 (27%), Gaps = 15/86 (17%)
Query: 687 PKITIAAH--------RNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINID 738
PK I A + + + C + V Y G E N
Sbjct: 3 PKPFIWAEPHFMVPKEKQVTICCQGNYG---AVEYQLHFEGSLFAVDRPKPPERINKVK- 58
Query: 739 GGLLEITNASFADAGEYECVVKSTVG 764
I + + AG+Y C+ +
Sbjct: 59 ---FYIPDMNSRMAGQYSCIYRVGEL 81
Score = 28.6 bits (64), Expect = 6.4
Identities = 17/83 (20%), Positives = 22/83 (26%), Gaps = 14/83 (16%)
Query: 210 NDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVEDR 269
+T C + + KE F L P R
Sbjct: 114 EKVTFYCRLDTATS-MFLLLKEG---RSSHVQRGYGKVQAEFPLG--------PVTTAHR 161
Query: 270 GSYHCKASNK--FGSIISESVQL 290
G+Y C S S SE V+L
Sbjct: 162 GTYRCFGSYNNHAWSFPSEPVKL 184
>1cd9_B G-CSF-R, protein (G-CSF receptor); class1 cytokine, hematopoietic
receptor, signal transduction cytokine; HET: NAG; 2.80A
{Mus musculus} SCOP: b.1.2.1 b.1.2.1 PDB: 1pgr_B 1cto_A
1gcf_A
Length = 215
Score = 59.8 bits (144), Expect = 4e-10
Identities = 29/206 (14%), Positives = 58/206 (28%), Gaps = 12/206 (5%)
Query: 777 PPGLPGGVQ-VVEVHKTSATIQWTDGATNGRPITHYKIIARTNWNSTWFNVSEHVIGKEV 835
PP P + ++ + S QW G P + R+ + + + +
Sbjct: 4 PPASPSNLSCLMHLTTNSLVCQWEPGPETHLPTSFILKSFRSRADCQYQGDTIPDCVAKK 63
Query: 836 DRYTGRKEASIENVLVPWSTYEFKVIAGNELGYG--EPSSPSPQYNTPADKPY--QAPSR 891
+ L+ + V A N LG P + P
Sbjct: 64 RQNNCSIPRKN---LLLYQYMAIWVQAENMLGSSESPKLCLDPMDVVKLEPPMLQALDIG 120
Query: 892 IGGGGGKIGDLSISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETLKEYGNVGIAVVRI 951
+ G L +SW+P ++ ++ + + TL + +
Sbjct: 121 PDVVSHQPGCLWLSWKPWKP--SEYMEQECELRYQPQLKGA--NWTLVFHLPSSKDQFEL 176
Query: 952 PSEFYYTEYEVKVQAINDVGPGPESE 977
Y ++++ I PG S
Sbjct: 177 CGLHQAPVYTLQMRCIRSSLPGFWSP 202
Score = 41.7 bits (97), Expect = 4e-04
Identities = 12/99 (12%), Positives = 25/99 (25%), Gaps = 8/99 (8%)
Query: 778 PGLPGGVQVVEVHKTSATIQWTDGATNGRPITHYKIIARTNWNSTWFNVSEHVIGKEVDR 837
L G VV + W + ++ + + + H+
Sbjct: 115 QALDIGPDVVSHQPGCLWLSWKPWKPSEYMEQECELRYQPQLKGANWTLVFHLPSS---- 170
Query: 838 YTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPSP 876
+ + + L Y ++ G S SP
Sbjct: 171 ---KDQFELCG-LHQAPVYTLQMRCIRSSLPGFWSPWSP 205
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 63.1 bits (153), Expect = 4e-10
Identities = 79/500 (15%), Positives = 139/500 (27%), Gaps = 207/500 (41%)
Query: 15 HSVFSQ--TIDELELRCPQHWVQ-YRDSCYRFVKSPLKTRNDAKLNCKSLDSDLANVNDA 71
H++ ++ ++ L + ++ Y + K P ++++ L
Sbjct: 102 HALAAKLLQENDTTLVKTKELIKNYITAR-IMAKRPFDKKSNSAL-----------FRAV 149
Query: 72 DEHGFIMYQLFWQDPQRRKWYFGGTQQSPNLWVNEDGTNLNELDAAFLPEPADNVQRDYL 131
E + +F GG Q + + + E L +L Y
Sbjct: 150 GEGNAQLVAIF-----------GG-QGNTDDYFEE----LRDL---------------YQ 178
Query: 132 AYSFSQSLKRWGFERVTGMEPLL--FICEASIQKLHYLLND----DRTYQYGMDI----E 181
Y L+ I ++ + L L+ ++ + G++I E
Sbjct: 179 TY-----------------HVLVGDLIKFSA-ETLSELIRTTLDAEKVFTQGLNILEWLE 220
Query: 182 NPDKIPRGPYFIKQPTDVVFDLSKRSILNDITL--------SCYAGGY-PNPSYEWFK-- 230
NP P Y + P + L I + + G+ P + K
Sbjct: 221 NPSNTPDKDYLLSIP--ISCPL--------IGVIQLAHYVVTAKLLGFTPGELRSYLKGA 270
Query: 231 EDYVQDRLVANLI---------DPLSDK----------RFTLSGGNLIINDPRQVEDRGS 271
+ Q + A I K R + N + P +ED
Sbjct: 271 TGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSL-PPSILED--- 326
Query: 272 YHCKASNKFG------SIISESVQLAFGFIGEFNLKRAPE-----IGNQNWGKAMFCDPP 320
N G SI + + + ++ + N P I N
Sbjct: 327 ---SLENNEGVPSPMLSISNLTQEQVQDYVNKTN-SHLPAGKQVEISLVN---------- 372
Query: 321 TNYPGVNYYWARDYFPNFVEEDKRVFVSYDG---ALY--FSALEQIDAGNYSCNVQSKVS 375
N V VS G +LY L + A + + QS++
Sbjct: 373 ----------GAK---NLV-------VS--GPPQSLYGLNLTLRKAKAPS-GLD-QSRI- 407
Query: 376 DTGRNGPFFPLKVFPHSNFQQLKFPNNF-PKTFPEAP-------KAGDKV--RLECVAFG 425
P S ++LKF N F P +P A D + L
Sbjct: 408 --------------PFSE-RKLKFSNRFLPVA---SPFHSHLLVPASDLINKDLVKNNVS 449
Query: 426 YP-----VPSYNWTRRGSPL 440
+ +P Y+ T GS L
Sbjct: 450 FNAKDIQIPVYD-TFDGSDL 468
Score = 55.8 bits (134), Expect = 7e-08
Identities = 108/682 (15%), Positives = 187/682 (27%), Gaps = 248/682 (36%)
Query: 73 EHGF-IMYQLFWQDPQRRKWYFGGTQQSP--NLWVNEDGTNLNELDAAFLPEPADNVQRD 129
EH + F+ Q ++ F P +++ T EL FL + V+
Sbjct: 17 EHVLLVPTASFFIASQLQE-QFNKILPEPTEGFAADDEPTTPAELVGKFLGYVSSLVEPS 75
Query: 130 YLAYSFSQSLKR--WGFERVTGMEPLLFICEASIQKLH----YLLNDDRTYQYGMDIENP 183
+ F Q L FE ++ I H LL ++ T +
Sbjct: 76 KVG-QFDQVLNLCLTEFENC-------YLEGNDI---HALAAKLLQENDT-----TLVKT 119
Query: 184 DKIPRGPYFIKQPTDVVFDLSKRSIL----NDITLSCYA--GGYPNPSYEWFKE------ 231
++ + + FD S L + A GG N ++F+E
Sbjct: 120 KELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTD-DYFEELRDLYQ 178
Query: 232 DY---VQD--RLVANLIDPLS------DKRFTLSGGNLI--INDPRQVEDRGSYHCKASN 278
Y V D + A + L +K FT G N++ + +P D+ Y
Sbjct: 179 TYHVLVGDLIKFSAETLSELIRTTLDAEKVFT-QGLNILEWLENPSNTPDK-DYLL---- 232
Query: 279 KFGSIISESVQLAFGFIGEFNLKRAPEIGNQNWGKAMFCDPPTNYPGVNYYWARDYFPNF 338
S+ ++ IG L ++ + G R Y
Sbjct: 233 --------SIPISCPLIGVIQLA--------HY--VVTA----KLLGFTPGELRSYLKGA 270
Query: 339 VEEDKRVFVSYDGALYFSALEQIDAGNYSCNVQSKVSDTGRNGPFFP-----LKVFPHSN 393
+ + A+ + +D+ + FF + V
Sbjct: 271 TGHSQGLVT----AVAIAE-----------------TDSWES--FFVSVRKAITVL---- 303
Query: 394 F------QQLKFPNNFPKTFPEAPKAGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYFE 447
F + +P T + + + VPS
Sbjct: 304 FFIGVRCYEA-----YPNTSLPP-----SILEDSLENNEGVPSP---------------- 337
Query: 448 NFNRILTIPNVKVEDQGEYICRASNDRSALESSVTIS-IQAEPNFTI---PLTDKHMDNQ 503
+L+I N+ E +Y+ +N V IS + N + P
Sbjct: 338 ----MLSISNLTQEQVQDYV-NKTNSHLPAGKQVEISLVNGAKNLVVSGPP--------- 383
Query: 504 ADLTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRY-F------IQDNVLTI----- 551
L +G+ N L ++ DQ R F + L +
Sbjct: 384 QSL------YGL---------NLTLRKAKAPSGLDQSRIPFSERKLKFSNRFLPVASPFH 428
Query: 552 -RYLNPERDPAMYQCRAKNQLKTRYSSAQLRVLTLKPSFKKRPLESETYAGE-----GGN 605
L P D N +++ +++ P+ T+ G G+
Sbjct: 429 SHLLVPASDLINKDLVKNN---VSFNAKDIQI----------PVYD-TFDGSDLRVLSGS 474
Query: 606 VT------IFCNP---EAAPKPKFVWKKDGNII--GSGGRRKIFENGNLLISPVSRDDSG 654
++ I P E + K I+ G GG SG
Sbjct: 475 ISERIVDCIIRLPVKWETTTQFKATH-----ILDFGPGG------------------ASG 511
Query: 655 IYSCTATNVHGMDESKG-RLIV 675
+ T N G G R+IV
Sbjct: 512 LGVLTHRNKDG----TGVRVIV 529
Score = 48.9 bits (116), Expect = 9e-06
Identities = 75/487 (15%), Positives = 129/487 (26%), Gaps = 173/487 (35%)
Query: 380 NGPF-FPLKVFPHSNF---QQLKFPNNFPKTFPEAPK--AGD---KVRLECVA-F-GYPV 428
+G L V P ++F QL+ F K PE + A D E V F GY V
Sbjct: 13 HGSLEHVLLV-PTASFFIASQLQ--EQFNKILPEPTEGFAADDEPTTPAELVGKFLGY-V 68
Query: 429 PSYNWTRRGSPLPRNAY-------FENFNR-ILTIPNV-------KVEDQGEYICRASND 473
+ P + F L ++ E+ +
Sbjct: 69 -----SSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDTTLVKTKELI 123
Query: 474 RSALESSVTISIQAEPNFTIPLTDKHMDNQADLTWTCEAF---GVPDVTYSWFRNGELLN 530
++ + + + + L + A L F G D +F EL
Sbjct: 124 KNYITARIMAKRPFDKKSNSALFRAVGEGNAQL---VAIFGGQGNTDD---YFE--EL-- 173
Query: 531 SETLPLEDQDRYFIQDNVLTIRYLNPERDPAMYQCRAKNQLKTRYSSAQLRVLTLKPSFK 590
+D Y Y + +K S+ L L
Sbjct: 174 --------RDLY------------------QTYHVLVGDLIKF--SAETLSELI------ 199
Query: 591 KRPLESETYAGEGGNVTIFC-NPEAAPKPKFVWKKDGNIIGSGGRRKIFENGNLLISPVS 649
+ L++E +G N+ + NP P + LL P+S
Sbjct: 200 RTTLDAEKVFTQGLNILEWLENPSNTPDKDY----------------------LLSIPIS 237
Query: 650 RDDSGIYS----CTATNVHGM------DESKGRLIVLHG-------------PSYYEQLP 686
G+ + G KG G S++ +
Sbjct: 238 CPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVR 297
Query: 687 PKITIAAHRNLQLRC----SAHTEELLDVAYIWTHN--------GVRIGNMDLNELETPN 734
IT+ + +RC + + +N + N+ +++
Sbjct: 298 KAITVLFF--IGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSIS--NLTQEQVQD-- 351
Query: 735 INIDGGLLEITNASFADAGEYECVVKSTVGKIS---TKTTVIVEGPP----GLPGGVQVV 787
+ TN+ + E IS ++V GPP GL +
Sbjct: 352 ------YVNKTNSHLPAGKQVE---------ISLVNGAKNLVVSGPPQSLYGL-----NL 391
Query: 788 EVHKTSA 794
+ K A
Sbjct: 392 TLRKAKA 398
Score = 41.6 bits (97), Expect = 0.001
Identities = 59/367 (16%), Positives = 101/367 (27%), Gaps = 144/367 (39%)
Query: 63 SDLA-NV-NDADEH-----GFIMYQLFWQDPQRRKWYFGGTQQSPNLWVNEDGTNLNELD 115
S A +V N AD H GF + + +P +FGG E G + E
Sbjct: 1639 SKAAQDVWNRADNHFKDTYGFSILDIVINNPVNLTIHFGG----------EKGKRIRE-- 1686
Query: 116 AAFLPEPADNVQRDYLAYSFSQSLKRWGFERVTGMEPLLFICEASIQKLHY-----LLND 170
+Y A F + + E + + LL+
Sbjct: 1687 -------------NYSAMIFETIV-----DGKLKTEKIFKEINEHSTSYTFRSEKGLLS- 1727
Query: 171 DRTYQYGMDIENPDKIPRGPYFIKQP----TDV-VF-DLSKRSILNDIT----------- 213
T + QP + F DL + ++
Sbjct: 1728 -AT-------QF-----------TQPALTLMEKAAFEDLKSKGLIPADATFAGHSLGEYA 1768
Query: 214 -LSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGNLIIND-PRQVEDRGS 271
L+ A E V +V R G + PR R +
Sbjct: 1769 ALASLADVMS------I-ESLV--EVVF--------YR-----GMTMQVAVPRDELGRSN 1806
Query: 272 YHCKASNKFGSIISESVQLAFGFIGEFNLKRAPEIGNQNWGKAMFCDPPTNYPGVNYYWA 331
Y A N G + + Q A ++ E +G + G + VNY
Sbjct: 1807 YGMIAINP-GRVAASFSQEALQYVVE-------RVGKRT-GW--LVEI------VNY--- 1846
Query: 332 RDYFPNFVEEDKRVFVSYDGALYFSALEQIDAGNYSCNVQSKVSDTGRNGPFFPLKVFPH 391
N E+++ + G L AL+ + NV + + + L+
Sbjct: 1847 -----N--VENQQYVAA--GDL--RALDTV------TNVLNFIKL--QKIDIIELQKSLS 1887
Query: 392 SNFQQLK 398
++++
Sbjct: 1888 --LEEVE 1892
Score = 39.6 bits (92), Expect = 0.006
Identities = 109/668 (16%), Positives = 184/668 (27%), Gaps = 259/668 (38%)
Query: 243 IDPLSDKRFTLSGGNL--IINDPRQVEDRGSYHCKASNKFGSIISESVQLAFGFIGEFNL 300
+D S + TLS G+L ++ P + AS QL F
Sbjct: 1 MDAYSTRPLTLSHGSLEHVLLVPT------ASFFIAS-----------QLQEQF-----N 38
Query: 301 KRAPEIGNQNWGKAMFCDPPTNYPGVNYYWARDYFPNFV--EEDKRVFVSYDGALYFSAL 358
K PE D PT + F +V + +D L L
Sbjct: 39 KILPEPTEGFAAD----DEPTTPAE---LVGK--FLGYVSSLVEPSKVGQFDQVL-NLCL 88
Query: 359 EQID----AGNYSCNVQSKVSDTGRNGPFFPLKV-------FPHSNFQQLKFPNNFPKTF 407
+ + GN ++ + + + +K + F
Sbjct: 89 TEFENCYLEGN---DIHALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSAL 145
Query: 408 PEAPKAGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYFENFNRILTIPNVKVEDQGEYI 467
A G +L FG +G+ + YFE + +V V D I
Sbjct: 146 FRAVGEG-NAQL-VAIFG---------GQGNT---DDYFEELRDLYQTYHVLVGD---LI 188
Query: 468 CRASNDRSALESSVTISIQAEPNFTIPLTDKHMDNQADL-TWTCEAFGVPDVTYSWFRNG 526
++ L + ++ AE FT L ++ W PD Y
Sbjct: 189 KFSAE---TLSELIRTTLDAEKVFTQGL---------NILEWLENPSNTPDKDY------ 230
Query: 527 ELLNSE-TLPLEDQDRYFIQDNVLTIRYLNPERDPAMYQCRAKNQLKTRYSSAQLRVLTL 585
LL+ + PL + QL Y ++L
Sbjct: 231 -LLSIPISCPL----------IGVI-------------------QL-AHYVVT-AKLLGF 258
Query: 586 KPSFKKRPLESETYAGEG-----------------GNVT-----IF--------CNPEAA 615
P + L+ T +G +V +F P +
Sbjct: 259 TPGELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTS 318
Query: 616 PKPKFVWKKDGNIIGSGGRRKIFENGN------LLISPVSRDDSGIYSCTATNVHGMDES 669
P + EN L IS ++++ Y TN H
Sbjct: 319 LPPSIL-------------EDSLENNEGVPSPMLSISNLTQEQVQDY-VNKTNSHLPAGK 364
Query: 670 K-------GR--LIV------LHG----------PSYYEQ--LP-----PKIT-----IA 692
+ G L+V L+G PS +Q +P K + +A
Sbjct: 365 QVEISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFLPVA 424
Query: 693 A--HRNLQLRCSAHT--EELLDVAYIW-----------THNGVRIGNMDLNELETPNINI 737
+ H +L L ++ ++L+ + T +G DL L +I
Sbjct: 425 SPFHSHL-LVPASDLINKDLVKNNVSFNAKDIQIPVYDTFDGS-----DLRVLSG---SI 475
Query: 738 DGGLLEITNASFADAGEYECVVKSTV---GKISTKTTVIVE-GPPGLPG----------- 782
++ +C+++ V K T I++ GP G G
Sbjct: 476 SERIV-------------DCIIRLPVKWETTTQFKATHILDFGPGGASGLGVLTHRNKDG 522
Query: 783 -GVQVVEV 789
GV+V+
Sbjct: 523 TGVRVIVA 530
Score = 32.3 bits (73), Expect = 1.0
Identities = 50/248 (20%), Positives = 79/248 (31%), Gaps = 67/248 (27%)
Query: 566 RAKNQLKTRYSSAQLRVLTLKPSFKKRPLESETY-AGEGGNVTIFCNPEAAPKPKFVWKK 624
RA N K Y + L ++ P+ + GE G I N A F
Sbjct: 1648 RADNHFKDTYGFSILDIV------INNPVNLTIHFGGEKGK-RIRENYSAM---IFETIV 1697
Query: 625 DGNIIGSGGRRKIFENGNLLISPVS-RDDSGIYSCT-----ATNVHGMDESKGRLIVLHG 678
DG + KIF+ N + + R + G+ S T A + L
Sbjct: 1698 DGKLK----TEKIFKEINEHSTSYTFRSEKGLLSATQFTQPA-------------LTLME 1740
Query: 679 PSYYEQL------PPKITIAAHRNL----QLRCSA---HTEELLDVAYIWTHNGVRIGNM 725
+ +E L P T A H +L L A E L++V + R G
Sbjct: 1741 KAAFEDLKSKGLIPADATFAGH-SLGEYAALASLADVMSIESLVEVVFY------R-GMT 1792
Query: 726 DLNELE-TPNINIDGGLLEITNASFADAGEYECVVKSTVGKISTKTTVIVE-----GPPG 779
+ + G++ I A + E ++ V ++ +T +VE
Sbjct: 1793 MQVAVPRDELGRSNYGMIAINPGRVAASFSQE-ALQYVVERVGKRTGWLVEIVNYNVE-- 1849
Query: 780 LPGGVQVV 787
Q V
Sbjct: 1850 ---NQQYV 1854
Score = 29.6 bits (66), Expect = 6.5
Identities = 26/154 (16%), Positives = 46/154 (29%), Gaps = 53/154 (34%)
Query: 8 LFIFVSFHSVF-SQTIDELELRCPQHWVQYRDSCYRFVKSPLK-----TRN--DAKLNCK 59
L + FHS D + ++ V + ++ T + D ++
Sbjct: 421 LPVASPFHSHLLVPASDLINKDLVKNNVSFN-------AKDIQIPVYDTFDGSDLRVLSG 473
Query: 60 SLDSDLANVNDADEHGFIM-YQLFWQ-------------DPQRRKWYFGGTQQSPNL-WV 104
S+ + + I+ + W+ P GG L
Sbjct: 474 SISERIVDC--------IIRLPVKWETTTQFKATHILDFGP-------GGASGLGVLTHR 518
Query: 105 NEDGTNLNELDAAFL-PEPADNVQRDYLAYSFSQ 137
N+DGT + + A L P D+ Y F Q
Sbjct: 519 NKDGTGVRVIVAGTLDINPDDD-------YGFKQ 545
>2ekj_A Collagen alpha-1(XX) chain; KIAA1510, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 105
Score = 56.7 bits (137), Expect = 5e-10
Identities = 15/99 (15%), Positives = 24/99 (24%), Gaps = 12/99 (12%)
Query: 775 EGPPGLPGGVQVVEVHKTSATIQWTDGATNGRPITHYKIIARTNWNSTWFNVSEHVIGKE 834
P + + S + WT G + HY + +
Sbjct: 5 SSGRSPPSNLALASETPDSLQVSWT--PPLG-RVLHYWLTYAPASGLGP--EKSVSVPGA 59
Query: 835 VDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSS 873
T + + L + Y V A G E S
Sbjct: 60 RSHVT------LPD-LQAATKYRVLVSAIYAAGRSEAVS 91
Score = 37.0 bits (86), Expect = 0.004
Identities = 13/79 (16%), Positives = 24/79 (30%), Gaps = 12/79 (15%)
Query: 902 LSISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETLKEYGNVGIAVVR--IPSEFYYTE 959
L +SW P ++Y + + + +++ G + T+
Sbjct: 24 LQVSWTP-----PLGRVLHYWLTYAPASGLG-PEKSVSVPGARSHVTLPDLQA----ATK 73
Query: 960 YEVKVQAINDVGPGPESEV 978
Y V V AI G
Sbjct: 74 YRVLVSAIYAAGRSEAVSA 92
>1c3a_A Flavocetin-A: alpha subunit; C-type lectin-like domains, membrane
protein; 2.50A {Trimeresurus flavoviridis} SCOP:
d.169.1.1 PDB: 1v4l_A
Length = 135
Score = 57.5 bits (139), Expect = 5e-10
Identities = 18/90 (20%), Positives = 33/90 (36%), Gaps = 7/90 (7%)
Query: 29 CPQHWVQYRDSCYRFVKSPLKTRNDAKLNCKSLD--SDLANVNDADEHGFIMYQLFWQDP 86
C W Y CY+ P K DA+ C+ S L ++ + E F+ + +
Sbjct: 4 CIPGWSAYDRYCYQAFSKP-KNWEDAESFCEEGVKTSHLVSIESSGEGDFVAQLVAEKIK 62
Query: 87 QRRKWY-FGGTQQS---PNLWVNEDGTNLN 112
++ G Q+ D +++N
Sbjct: 63 TSFQYVWIGLRIQNKEQQCRSEWSDASSVN 92
>1uv0_A Pancreatitis-associated protein 1; lectin, C-type, secreted,
inflammatory response, acute phase; 1.78A {Homo sapiens}
SCOP: d.169.1.1 PDB: 2go0_A
Length = 149
Score = 57.9 bits (140), Expect = 5e-10
Identities = 21/100 (21%), Positives = 35/100 (35%), Gaps = 8/100 (8%)
Query: 20 QTIDELELRCPQHWVQYRDSCYRFVKSPLKTRNDAKLNCKSLDS-DLANVNDADEHGFIM 78
+ + +RCP+ Y CY SP K+ DA L C+ S +L +V E F+
Sbjct: 5 RELPSARIRCPKGSKAYGSHCYALFLSP-KSWTDADLACQKRPSGNLVSVLSGAEGSFVS 63
Query: 79 YQLFWQDPQRRKWYFGGT------QQSPNLWVNEDGTNLN 112
+ + G + + W +N
Sbjct: 64 SLVKSIGNSYSYVWIGLHDPTQGTEPNGEGWEWSSSDVMN 103
>1x5l_A Ephrin type-A receptor 8; FN3 domain, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: b.1.2.1
Length = 111
Score = 56.6 bits (137), Expect = 6e-10
Identities = 20/101 (19%), Positives = 34/101 (33%), Gaps = 12/101 (11%)
Query: 775 EGPPGLPGGVQVVEVHKTSATIQWTD-GATNGRPITHYKIIARTNWNSTWFNVSEHVIGK 833
+ P ++ +TS ++ W + NG I Y+I + + S
Sbjct: 8 QAAPSQVVVIRQERAGQTSVSLLWQEPEQPNG-IILEYEIKYYEK-DKEMQSYS------ 59
Query: 834 EVDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSP 874
A++ L P + Y F+V A G G S
Sbjct: 60 --TLKAVTTRATVSG-LKPGTRYVFQVRARTSAGCGRFSQA 97
Score = 45.0 bits (107), Expect = 6e-06
Identities = 23/101 (22%), Positives = 36/101 (35%), Gaps = 11/101 (10%)
Query: 880 TPADKPYQAPSRIGGGGGKIGDLSISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETLK 939
+ P I +S+ W+ P E+ N + Y+I + +K+ TLK
Sbjct: 6 SGQAAP-SQVVVIRQERAGQTSVSLLWQE-P-EQPNGIILEYEIKYYEKDKEMQSYSTLK 62
Query: 940 EYGNVGIAVVR--IPSEFYYTEYEVKVQAINDVGPGPESEV 978
A V P T Y +V+A G G S+
Sbjct: 63 --AVTTRATVSGLKP----GTRYVFQVRARTSAGCGRFSQA 97
>1ukm_A EMS16 A chain, EMS16 subunit A; domain swapping, C-type lectin,
toxin; HET: NAG; 1.90A {Echis multisquamatus} SCOP:
d.169.1.1 PDB: 1v7p_A*
Length = 134
Score = 57.0 bits (138), Expect = 7e-10
Identities = 23/93 (24%), Positives = 34/93 (36%), Gaps = 13/93 (13%)
Query: 29 CPQHWVQYRDSCYRFVKSPLKTRNDAKLNCKSL--DSDLANVNDADEHGFIMYQLFWQDP 86
CP W Y CY + P + +A+ C D L ++ +E F+ QL
Sbjct: 4 CPSDWTAYDQHCYLAIGEP-QNWYEAERFCTEQAKDGHLVSIQSREEGNFV-AQLVSGFM 61
Query: 87 QRRKWYF--GGT-----QQSPNLWVNEDGTNLN 112
R + Y G QQ W DG+ +
Sbjct: 62 HRSEIYVWIGLRDRREEQQCNPEWN--DGSKII 92
>1gz2_A Ovocleidin-17, OC-17 ovocleidin; structural protein, CTLD, eggshell
structural protein, phosphoprotein, sugar-binding
protein, glycoprotein; HET: SEP; 1.5A {Gallus gallus}
SCOP: d.169.1.1
Length = 142
Score = 57.1 bits (138), Expect = 7e-10
Identities = 19/95 (20%), Positives = 25/95 (26%), Gaps = 13/95 (13%)
Query: 29 CPQHWVQYRDSCYRFVKSPLKTRNDAKLNCKSL--DSDLANVNDADEHGFIMYQLFWQDP 86
C WV C F + + A+ C+ S LA V A E + +L
Sbjct: 5 CGPGWVPTPGGCLGFFSRE-LSWSRAESFCRRWGPGSHLAAVRSAAELRLL-AELLNASR 62
Query: 87 QRRKWYFGGT---------QQSPNLWVNEDGTNLN 112
G W DGT
Sbjct: 63 GGDGSGEGADGRVWIGLHRPAGSRSWRWSDGTAPR 97
>1wfn_A Sidekick 2; FN3, cell adhesion, structural genomics, riken
structural genomics/proteomics initiative, RSGI; NMR
{Homo sapiens} SCOP: b.1.2.1
Length = 119
Score = 56.7 bits (137), Expect = 7e-10
Identities = 26/112 (23%), Positives = 40/112 (35%), Gaps = 11/112 (9%)
Query: 775 EGPPGLPGGVQVVEVHKTSATIQWTD-GATNGRPITHYKIIARTNWNSTWFNVSEHVIGK 833
E PG G + E+ TS + W + G NG +T Y+I +W +
Sbjct: 15 EDVPGPVGHLSFSEILDTSLKVSWQEPGEKNG-ILTGYRI--------SWEEYNRTNTRV 65
Query: 834 EVDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPSPQYNTPADKP 885
E + L +TY +V A G G+ S+ + P P
Sbjct: 66 THYLPNVTLEYRVTG-LTALTTYTIEVAAMTSKGQGQVSASTISSGVPPSGP 116
Score = 47.4 bits (113), Expect = 1e-06
Identities = 25/112 (22%), Positives = 37/112 (33%), Gaps = 7/112 (6%)
Query: 867 GYGEPSSPSPQYNTPADKPYQAPSRIGGGGGKIGDLSISWEPLPREKQNAPNIYYKIFWR 926
G S P T D P + L +SW+ P ++N Y+I W
Sbjct: 1 GSSGSSGPQLVR-THEDVP-GPVGHLSFSEILDTSLKVSWQE-P-GEKNGILTGYRISWE 56
Query: 927 KKNDTEFQSETLKEYGNVGIAVVRIPSEFYYTEYEVKVQAINDVGPGPESEV 978
+ N T + Y R+ T Y ++V A+ G G S
Sbjct: 57 EYNRTN---TRVTHYLPNVTLEYRVTGLTALTTYTIEVAAMTSKGQGQVSAS 105
>1b6u_A KIR2DL3, P58 killer cell inhibitory receptor; natural killer cell,
HLA, major histocompatibility complex class I (MHC class
I); 3.00A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4
Length = 257
Score = 59.6 bits (144), Expect = 8e-10
Identities = 38/238 (15%), Positives = 68/238 (28%), Gaps = 33/238 (13%)
Query: 484 SIQAEPNFTIPLTDKHMDNQADLTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYF 543
S+ A P + + + C + V + R G+ ++ L E D
Sbjct: 9 SLLAHPGPLVKSEET-------VILQCWS-DVRFQHFLLHREGKFKDTLHLIGEHHDGVS 60
Query: 544 IQDNVLTIRYLNPERDPAMYQCRAKNQLKTRYSSA-------QLRVLTLKPSFKKRPLES 596
+I + + Y+C SA + L KPS +P
Sbjct: 61 --KANFSIGPMMQD-LAGTYRCYGSVTHSPYQLSAPSDPLDIVITGLYEKPSLSAQP--- 114
Query: 597 ETYAGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENG----NLLISPVSRDD 652
G +VT+ C+ + + ++G NG + + P +
Sbjct: 115 GPTVLAGESVTLSCSSRS-SYDMYHLSREGEAHERRFSAGPKVNGTFQADFPLGPAT--H 171
Query: 653 SGIYSCTATNVHGMDESKGR-----LIVLHGPSYYEQLPPKITIAAHRNLQLRCSAHT 705
G Y C + E + V PS P + + L +A
Sbjct: 172 GGTYRCFGSFRDSPYEWSNSSDPLLVSVTGNPSNSWPSPTEPSSETGNPRHLHAAAEQ 229
Score = 54.2 bits (130), Expect = 5e-08
Identities = 29/168 (17%), Positives = 49/168 (29%), Gaps = 22/168 (13%)
Query: 602 EGGNVTIFC--NPEAAPKPKFVWKKDGNIIGSGGRRKIFENG----NLLISPVSRDDSGI 655
V + C + F+ ++G + +G N I P+ +D +G
Sbjct: 20 SEETVILQCWSDVRFQ---HFLLHREGKFKDTLHLIGEHHDGVSKANFSIGPMMQDLAGT 76
Query: 656 YSCTATNVHGMDE----SKGRLIVLHGPSYYEQL--PPKITIAAHRNLQLRCSAHTEELL 709
Y C + H + S IV+ G L P T+ A ++ L CS+ +
Sbjct: 77 YRCYGSVTHSPYQLSAPSDPLDIVITGLYEKPSLSAQPGPTVLAGESVTLSCSSRSS--- 133
Query: 710 DVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEITNASFADAGEYEC 757
Y + G + G Y C
Sbjct: 134 YDMYHLSREGEAHERRFSA----GPKVNGTFQADFPLGPATHGGTYRC 177
Score = 48.1 bits (114), Expect = 5e-06
Identities = 35/187 (18%), Positives = 55/187 (29%), Gaps = 18/187 (9%)
Query: 353 LYFSALEQIDAGNYSCNVQSKVSDTGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPEAPK 412
+ Q AG Y C S + P PL + +++ P+ + P
Sbjct: 64 FSIGPMMQDLAGTYRCYGSVTHSPYQLSAPSDPLDIVITGLYEK---PSLSAQPGPTVL- 119
Query: 413 AGDKVRLECVAFGYPVPSYNWTRRGSPLPR---NAYFENFNRILTIPNVKVEDQGEYICR 469
AG+ V L C + Y+ +R G R N P G Y C
Sbjct: 120 AGESVTLSCSSRSSYD-MYHLSREGEAHERRFSAGPKVNGTFQADFPLGPATHGGTYRCF 178
Query: 470 ASNDRSALESS-----VTISIQAEPNFTIPLTDKHMDNQAD-LTWTCEA----FGVPDVT 519
S S E S + +S+ P+ + P + + A D+
Sbjct: 179 GSFRDSPYEWSNSSDPLLVSVTGNPSNSWPSPTEPSSETGNPRHLHAAAEQKLISEEDLN 238
Query: 520 YSWFRNG 526
G
Sbjct: 239 LDLVPRG 245
Score = 45.7 bits (108), Expect = 3e-05
Identities = 32/232 (13%), Positives = 55/232 (23%), Gaps = 26/232 (11%)
Query: 414 GDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYFENFNRI-----LTIPNVKVEDQGEYIC 468
+ V L+C + + R G + +I + + G Y C
Sbjct: 21 EETVILQCWS-DVRFQHFLLHREGKFKDTLHLIGEHHDGVSKANFSIGPMMQDLAGTYRC 79
Query: 469 RASNDRSALESS-----VTISIQAEPNFTIPLTD--KHMDNQADLTWTCEAFGVPDVTYS 521
S S + S + I I + +T +C + Y
Sbjct: 80 YGSVTHSPYQLSAPSDPLDIVITGLYEKPSLSAQPGPTVLAGESVTLSCSS-RSSYDMYH 138
Query: 522 WFRNGELLNSETLPLEDQDRYFIQDNVLTIRYLNPERDPAMYQCRAKNQLKTRYSSA--- 578
R GE + F D L P Y+C + S
Sbjct: 139 LSREGEAHERRFSAGPKVNGTFQADFPLG-----PATHGGTYRCFGSFRDSPYEWSNSSD 193
Query: 579 --QLRVLTLKPSFKKRPLESETYAGEGGNVTIFC--NPEAAPKPKFVWKKDG 626
+ V + P E + G ++ + G
Sbjct: 194 PLLVSVTGNPSNSWPSPTEPSSETGNPRHLHAAAEQKLISEEDLNLDLVPRG 245
Score = 31.9 bits (72), Expect = 0.99
Identities = 41/256 (16%), Positives = 70/256 (27%), Gaps = 56/256 (21%)
Query: 212 ITLSCYAGGYPNPSYEWFKEDYVQD--RLVANLIDPLSDKRFTLSGGNLIINDPRQVEDR 269
+ L C+ + +E +D L+ D +S F++ P +
Sbjct: 24 VILQCW-SDVRFQHFLLHREGKFKDTLHLIGEHHDGVSKANFSIG--------PMMQDLA 74
Query: 270 GSYHCKASNKFG----SIISESVQLAFGFIGEFNLKRAPEIGNQNWGK--AMFCDPPTNY 323
G+Y C S S S+ + + + E A G+ + C ++Y
Sbjct: 75 GTYRCYGSVTHSPYQLSAPSDPLDIVITGLYEKPSLSAQPGPTVLAGESVTLSCSSRSSY 134
Query: 324 PGVNYYWARDYFPNFVEEDKRVFVSYDGALYFSALEQIDAGNYSC--------NVQSKVS 375
Y+ +R+ + V+ F G Y C S S
Sbjct: 135 --DMYHLSREGEAHERRFSAGPKVNGTFQADFPLGPATHGGTYRCFGSFRDSPYEWSNSS 192
Query: 376 D------TGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPEAPKAGDKVRLECVA----FG 425
D TG +P P S + G+ L A
Sbjct: 193 DPLLVSVTGNPSNSWPSPTEPSS-------------------ETGNPRHLHAAAEQKLIS 233
Query: 426 YPVPSYNWTRRGSPLP 441
+ + RGS
Sbjct: 234 EEDLNLDLVPRGSSSH 249
>1j34_A Coagulation factor IX-binding protein A chain; magnesium ION,
calcium ION, GLA domain, protein binding/blood clotting
complex; HET: CGU; 1.55A {Trimeresurus flavoviridis}
SCOP: d.169.1.1 PDB: 1bj3_A* 1j35_A* 1x2t_A* 1x2w_A
1ixx_A 1y17_A 1wt9_A 1iod_A*
Length = 129
Score = 56.7 bits (137), Expect = 1e-09
Identities = 21/91 (23%), Positives = 37/91 (40%), Gaps = 9/91 (9%)
Query: 29 CPQHWVQYRDSCYRFVKSPLKTRNDAKLNCK--SLDSDLANVNDADEHGFI--MYQLFWQ 84
CP W Y CY+ K KT +DA+ C + L ++ A E F+ + Q
Sbjct: 2 CPSGWSSYEGHCYKPFKLY-KTWDDAERFCTEQAKGGHLVSIESAGEADFVAQLVTENIQ 60
Query: 85 DPQRRKWYFGGT---QQSPNLWVNEDGTNLN 112
+ + W G ++ DG++++
Sbjct: 61 NTKSYVW-IGLRVQGKEKQCSSEWSDGSSVS 90
>3gpr_C Rhodocetin subunit gamma; disulfide bond, lectin, secreted, toxin,
cell adhesion; 3.20A {Calloselasma rhodostoma}
Length = 134
Score = 56.3 bits (136), Expect = 1e-09
Identities = 18/93 (19%), Positives = 33/93 (35%), Gaps = 9/93 (9%)
Query: 27 LRCPQHWVQYRDSCYRFVKSPLKTRNDAKLNCK--SLDSDLANVNDADEHGFIMYQLFWQ 84
C W Y CY+ P KT ++A+ C + L ++ E F+ QL
Sbjct: 1 FNCLPGWSAYDQHCYQAFNEP-KTWDEAERFCTEQAKRGHLVSIGSDGEADFV-AQLVTN 58
Query: 85 DPQRRKWYF--GG---TQQSPNLWVNEDGTNLN 112
+ +R + Y G ++ ++
Sbjct: 59 NIKRPELYVWIGLRDRRKEQQCSSEWSMSASII 91
>1zxq_A ICAM-2, intercellular adhesion molecule-2; immunoglobulin fold,
cell adhesion, glycoprotein, transmembr; HET: NAG; 2.20A
{Homo sapiens} SCOP: b.1.1.3 b.1.1.4
Length = 192
Score = 57.8 bits (139), Expect = 1e-09
Identities = 26/174 (14%), Positives = 46/174 (26%), Gaps = 14/174 (8%)
Query: 408 PEAP--KAGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYFENFNRILTIPNVKVEDQGE 465
P+ + + + C P + L + E + +
Sbjct: 9 PKKLAVEPKGSLEVNCST-TCNQPEVGGLE--TSLNKILLDEQ-AQWKHYLVSNISHDTV 64
Query: 466 YICRASNDRSALESSVTISIQAEP-NFTIPLTDKHMDNQADLTWTCEAFGV---PDVTYS 521
C + + +S+ P + L + T C V +T
Sbjct: 65 LQCHFTCSGKQESMNSNVSVYQPPRQVILTLQPTLVAVGKSFTIECRVPTVEPLDSLTLF 124
Query: 522 WFRNGELLNSETLPLEDQDRYFIQDNVLTIRYL-NPERDPAMYQCRAKNQLKTR 574
FR E L+ ET Q+ T + E + C A L +R
Sbjct: 125 LFRGNETLHYETFGKAAPAP---QEATATFNSTADREDGHRNFSCLAVLDLMSR 175
Score = 39.0 bits (90), Expect = 0.003
Identities = 24/162 (14%), Positives = 39/162 (24%), Gaps = 22/162 (13%)
Query: 509 TCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQDNVLTIRYLNPERDPAMYQCRAK 568
C LN L + Q ++++ N+ + QC
Sbjct: 23 NCST-TCNQPEVGGLET--SLNKILLDEQAQWKHYLVSNI---------SHDTVLQCHFT 70
Query: 569 NQLKTRYSSAQLRVLTLKPSFKKRPLESETYAGEGGNVTIFCN-PEAAPKPK--FVWKKD 625
K ++ + V T G + TI C P P +
Sbjct: 71 CSGKQESMNSNVSVYQPPRQVILTL--QPTLVAVGKSFTIECRVPTVEPLDSLTLFLFRG 128
Query: 626 GNIIGS----GGRRKIFENGNLLISPVSRDDSG-IYSCTATN 662
+ E S R+D +SC A
Sbjct: 129 NETLHYETFGKAAPAPQEATATFNSTADREDGHRNFSCLAVL 170
Score = 30.1 bits (67), Expect = 2.2
Identities = 15/167 (8%), Positives = 41/167 (24%), Gaps = 21/167 (12%)
Query: 686 PPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEIT 745
P K+ + +L++ CS + + N + +
Sbjct: 9 PKKLAVEPKGSLEVNCSTTCNQPEVGGLETSLNKILLDE-------------QAQWKHYL 55
Query: 746 NASFADAGEYECVVKSTVGKISTKTTVIVEGPPGLPGGVQVVEVHKTSATIQWTDGATNG 805
++ + +C + + S + V V PP + +
Sbjct: 56 VSNISHDTVLQCHFTCSGKQESMNSNVSVYQPPRQVILTLQPTLVAVGKSFTIECRVPTV 115
Query: 806 RPITHYKIIARTNWNSTWFNVSEHVIGKEVDRYTGRKEASIENVLVP 852
P+ + F +E + + + + +
Sbjct: 116 EPLDSLTL--------FLFRGNETLHYETFGKAAPAPQEATATFNST 154
>2e3x_B Coagulation factor X-activating enzyme light CHAI; disintegrin,
metalloproteinase, C-type lectin, hydrolase, BL
clotting, toxin; HET: NAG MAN GM6; 2.91A {Daboia
russellii siamensis}
Length = 134
Score = 56.3 bits (136), Expect = 1e-09
Identities = 21/95 (22%), Positives = 33/95 (34%), Gaps = 13/95 (13%)
Query: 27 LRCPQHWVQYRDSCYRFVKSPLKTRNDAKLNCKSL--DSDLANVNDADEHGFI--MYQLF 82
L CP YR CYR K KT A+ C + L ++ +E F+ +
Sbjct: 1 LDCPPDSSLYRYFCYRVFKEH-KTWEAAERFCMEHPNNGHLVSIESMEEAEFVAKLLSNT 59
Query: 83 WQDPQRRKWYFGGTQQSPN-----LWVNEDGTNLN 112
W G + W DG++++
Sbjct: 60 TGKFITHFW-IGLMIKDKEQECSSEWS--DGSSVS 91
>1sb2_A Rhodocetin alpha subunit; C-type lectin, domain swapping, toxin;
1.90A {Calloselasma rhodostoma} SCOP: d.169.1.1 PDB:
3gpr_A
Length = 133
Score = 56.3 bits (136), Expect = 1e-09
Identities = 16/91 (17%), Positives = 36/91 (39%), Gaps = 9/91 (9%)
Query: 29 CPQHWVQYRDSCYRFVKSPLKTRNDAKLNCKSLD--SDLANVNDADEHGFIMYQLFWQDP 86
CP W + CYR K KT +A+ C + + L ++ + E F+ + +
Sbjct: 2 CPDGWSSTKSYCYRPFKEK-KTWEEAERFCTEQEKEAHLVSMENRLEAVFV-DMVMENNF 59
Query: 87 QRRKWYF-----GGTQQSPNLWVNEDGTNLN 112
+ + + + + DG++++
Sbjct: 60 ENKIYRSWIGLKIENKGQRSNLEWSDGSSIS 90
>1rtm_1 Mannose-binding protein-A; lectin; 1.80A {Rattus norvegicus} SCOP:
d.169.1.1 h.1.1.1 PDB: 1kwu_A* 1kwv_A* 1kwt_A* 1kwx_A*
1kwy_A* 1kx1_A* 1kww_A 1kwz_A* 1kx0_A* 3kmb_1* 1kmb_1*
2kmb_1* 4kmb_1* 1afb_1* 1afa_1* 1afd_1 1bch_1* 1bcj_1*
1fif_A 1fih_A*
Length = 149
Score = 56.6 bits (137), Expect = 1e-09
Identities = 13/88 (14%), Positives = 28/88 (31%), Gaps = 8/88 (9%)
Query: 26 ELRCPQHWVQYRDSCYRFVKSPLKTRNDAKLNCKSLDSDLANVNDADEHGFIMYQLFWQD 85
+L + + + K C L +A +A+E+ I Q+
Sbjct: 25 KLHAFSMGKKSGKKFFVTNHER-MPFSKVKALCSELRGTVAIPRNAEENKAI------QE 77
Query: 86 PQRRKWYFGGT-QQSPNLWVNEDGTNLN 112
+ + G T + + ++ G L
Sbjct: 78 VAKTSAFLGITDEVTEGQFMYVTGGRLT 105
>3bx4_A Aggretin alpha chain; toxin; 1.70A {Agkistrodon rhodostoma} PDB:
2vrp_A
Length = 136
Score = 56.3 bits (136), Expect = 1e-09
Identities = 20/93 (21%), Positives = 40/93 (43%), Gaps = 12/93 (12%)
Query: 29 CPQHWVQYRDSCYRFVKSPLKTRNDAKLNCKSLD--SDLANVNDADEHGFIMYQLFWQDP 86
C W Y CY+ KT ++A+ C++ + + LA++ E F+ + + +D
Sbjct: 5 CDFGWSPYDQHCYQAFNEQ-KTWDEAEKFCRAQENGAHLASIESNGEADFVSWLISQKDE 63
Query: 87 QRRKWYF--GGTQQSPN-----LWVNEDGTNLN 112
+ Y G Q+ W DG++++
Sbjct: 64 LADEDYVWIGLRAQNKEQQCSSEWS--DGSSVS 94
>1dr9_A B7-1 (CD80), T lymphocyte activation antigen; IG superfamily,
immune system; HET: NAG; 3.00A {Homo sapiens} SCOP:
b.1.1.1 b.1.1.3 PDB: 1i8l_A*
Length = 201
Score = 57.7 bits (139), Expect = 1e-09
Identities = 22/192 (11%), Positives = 46/192 (23%), Gaps = 29/192 (15%)
Query: 317 CDPPT---NYPGVNYYWARD-----YFPNFVEEDK-----RVFVSYDG--ALYFSALEQI 361
C YW ++ + R ++ AL
Sbjct: 16 CGHNVSVEELAQTRIYWQKEKKMVLTMMSGDMNIWPEYKNRTIFDITNNLSIVILALRPS 75
Query: 362 DAGNYSCNVQSKVSDTGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPEAPKAGDKVRLEC 421
D G Y C V D + + + + P + R+ C
Sbjct: 76 DEGTYECVVLKYEKDAFKREHLAEVTLSVKA-------DFPTPSISDFEIPTSNIRRIIC 128
Query: 422 VAFG-YPVPSYNWTRRGSPLPRNAYFENFN------RILTIPNVKVEDQGEYICRASNDR 474
G +P P +W G L + + + + + + ++C
Sbjct: 129 STSGGFPEPHLSWLENGEELNAINTTVSQDPETELYAVSSKLDFNMTTNHSFMCLIKYGH 188
Query: 475 SALESSVTISIQ 486
+ + +
Sbjct: 189 LRVNQTFNWNTA 200
Score = 50.4 bits (120), Expect = 5e-07
Identities = 29/187 (15%), Positives = 53/187 (28%), Gaps = 32/187 (17%)
Query: 412 KAGDKVRLECV----AFGYPVPSYNWTRRGSPLPRNAYFENF------NRI--------- 452
+ + L C W + + + NR
Sbjct: 7 EVKEVATLSCGHNVSVEELAQTRIYWQKEKKMVLTMMSGDMNIWPEYKNRTIFDITNNLS 66
Query: 453 LTIPNVKVEDQGEYICRASNDRS---ALESSVTISIQAEPNFTIP-LTDKHMDNQADLTW 508
+ I ++ D+G Y C E +++ + +F P ++D +
Sbjct: 67 IVILALRPSDEGTYECVVLKYEKDAFKREHLAEVTLSVKADFPTPSISDFEIPTSNIRRI 126
Query: 509 TCEAFGV-PDVTYSWFRNGELL---NSETLPLEDQDRYFIQDNVLTIRYLNPERDPAMYQ 564
C G P+ SW NGE L N+ + + Y V + N + +
Sbjct: 127 ICSTSGGFPEPHLSWLENGEELNAINTTVSQDPETELY----AVSSKLDFNMTTN-HSFM 181
Query: 565 CRAKNQL 571
C K
Sbjct: 182 CLIKYGH 188
Score = 48.4 bits (115), Expect = 2e-06
Identities = 26/203 (12%), Positives = 57/203 (28%), Gaps = 41/203 (20%)
Query: 600 AGEGGNVTIFC----NPEAAPKPKFVWKKDGNII---GSG---------GRRKIFENGN- 642
T+ C + E + + W+K+ ++ SG R N
Sbjct: 6 KEVKEVATLSCGHNVSVEELAQTRIYWQKEKKMVLTMMSGDMNIWPEYKNRTIFDITNNL 65
Query: 643 -LLISPVSRDDSGIYSCTATNVHGMDESKGRLIVLHGPSYYEQLPPKITIAAHR---NLQ 698
++I + D G Y C + L + + P I+ +
Sbjct: 66 SIVILALRPSDEGTYECVVLKYEKDAFKREHLAEVTLSVKADFPTPSISDFEIPTSNIRR 125
Query: 699 LRCSAH------TEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEIT---NASF 749
+ CS W NG + T + + + L ++ + +
Sbjct: 126 IICSTSGGFPEPH-------LSWLENGEEL----NAINTTVSQDPETELYAVSSKLDFNM 174
Query: 750 ADAGEYECVVKSTVGKISTKTTV 772
+ C++K +++
Sbjct: 175 TTNHSFMCLIKYGHLRVNQTFNW 197
Score = 38.4 bits (89), Expect = 0.005
Identities = 13/84 (15%), Positives = 26/84 (30%), Gaps = 7/84 (8%)
Query: 210 NDITLSCYA-GGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVED 268
N + C GG+P P W + + + + + + +S L N
Sbjct: 122 NIRRIICSTSGGFPEPHLSWLENGEELNAINTTVSQDPETELYAVS-SKLDFNM----TT 176
Query: 269 RGSYHCKASNKFGSI-ISESVQLA 291
S+ C + + + A
Sbjct: 177 NHSFMCLIKYGHLRVNQTFNWNTA 200
Score = 37.3 bits (86), Expect = 0.011
Identities = 17/105 (16%), Positives = 34/105 (32%), Gaps = 23/105 (21%)
Query: 742 LEITNASFADAGEYECVV-----KSTVGKISTKTTVIVEGPPGLPGGVQVVEVHKTS--- 793
+ I +D G YECVV + + + T+ V+ P + E+ ++
Sbjct: 67 IVILALRPSDEGTYECVVLKYEKDAFKREHLAEVTLSVKADFPTP-SISDFEIPTSNIRR 125
Query: 794 -----------ATIQWTDGATNGRPITHYKIIARTNWNSTWFNVS 827
+ W + NG + + + + VS
Sbjct: 126 IICSTSGGFPEPHLSWLE---NGEELNAINTTVSQDPETELYAVS 167
Score = 35.7 bits (82), Expect = 0.035
Identities = 24/177 (13%), Positives = 48/177 (27%), Gaps = 18/177 (10%)
Query: 211 DITLSCY----AGGYPNPSYEWFKEDYVQDRLVANLIDPLSD--KRFTLSGGN---LIIN 261
TLSC W KE + +++ ++ + R N ++I
Sbjct: 11 VATLSCGHNVSVEELAQTRIYWQKEKKMVLTMMSGDMNIWPEYKNRTIFDITNNLSIVIL 70
Query: 262 DPRQVEDRGSYHCKASNKFGSIISES--VQLAFGFIGEFNLKRAPEIGNQNWGKAMF-CD 318
+ D G+Y C ++ +F + C
Sbjct: 71 AL-RPSDEGTYECVVLKYEKDAFKREHLAEVTLSVKADFPTPSISDFEIPTSNIRRIICS 129
Query: 319 PPTNYPGVNYYWARDYFPNFVEEDKRVFVSYDGALY--FSAL--EQIDAGNYSCNVQ 371
+P + W + + V + LY S L ++ C ++
Sbjct: 130 TSGGFPEPHLSWLENGEE-LNAINTTVSQDPETELYAVSSKLDFNMTTNHSFMCLIK 185
>1hup_A Mannose-binding protein; alpha-helical coiled-coil, C-type lectin;
2.50A {Homo sapiens} SCOP: d.169.1.1 h.1.1.1
Length = 141
Score = 56.2 bits (136), Expect = 2e-09
Identities = 14/85 (16%), Positives = 29/85 (34%), Gaps = 8/85 (9%)
Query: 29 CPQHWVQYRDSCYRFVKSPLKTRNDAKLNCKSLDSDLANVNDADEHGFIMYQLFWQDPQR 88
Q + + T K C + +A +A E+G I + +
Sbjct: 20 TFSLGKQVGNKFFLTNGEI-MTFEKVKALCVKFQASVATPRNAAENGAIQNLI------K 72
Query: 89 RKWYFGGT-QQSPNLWVNEDGTNLN 112
+ + G T +++ +V+ G L
Sbjct: 73 EEAFLGITDEKTEGQFVDLTGNRLT 97
>3qht_C Monobody YSMB-1; fibronectin type III, yeast small ubiquitin-like
modifier, S NOVO protein; 2.40A {Artificial gene}
Length = 97
Score = 54.7 bits (132), Expect = 2e-09
Identities = 20/98 (20%), Positives = 33/98 (33%), Gaps = 12/98 (12%)
Query: 777 PPGLPGGVQVVEVHKTSATIQWTDGATNGRPITHYKIIARTNWNSTWFNVSEHVIGKEVD 836
+P ++VV TS I W A++ +++Y+I T+ + +E
Sbjct: 4 VSSVPTKLEVVAATPTSLLISWD--ASSS-SVSYYRI--------TYGETGGNSPVQEFT 52
Query: 837 RYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSP 874
A+I L P Y V A S
Sbjct: 53 VPGSSSTATISG-LSPGVDYTITVYAYYSYYDLYYSYS 89
Score = 37.8 bits (88), Expect = 0.002
Identities = 14/78 (17%), Positives = 24/78 (30%), Gaps = 12/78 (15%)
Query: 902 LSISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETLKEYGNVGIAVVR--IPSEFYYTE 959
L ISW+ + YY+I + + + G+ A + P +
Sbjct: 21 LLISWDASS-----SSVSYYRITYGETGGNS-PVQEFTVPGSSSTATISGLSP----GVD 70
Query: 960 YEVKVQAINDVGPGPESE 977
Y + V A S
Sbjct: 71 YTITVYAYYSYYDLYYSY 88
>3teu_A Fibcon; FN3 domain, fibronectin TPYE III domain, consensus design,
S de novo protein; HET: DIO; 1.00A {Synthetic}
Length = 98
Score = 54.7 bits (132), Expect = 2e-09
Identities = 22/95 (23%), Positives = 30/95 (31%), Gaps = 12/95 (12%)
Query: 781 PGGVQVVEVHKTSATIQWTDGATNGRPITHYKIIARTNWNSTWFNVSEHVIGKEVDRYTG 840
P +QV V TS T+ WT + IT Y+I + E + T
Sbjct: 5 PTDLQVTNVTDTSITVSWT--PPSA-TITGYRITYTPSNGPGE--PKELTVPPSSTSVT- 58
Query: 841 RKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPS 875
I L P Y V A + P +
Sbjct: 59 -----ITG-LTPGVEYVVSVYALKDNQESPPLVGT 87
Score = 33.9 bits (78), Expect = 0.039
Identities = 17/79 (21%), Positives = 28/79 (35%), Gaps = 12/79 (15%)
Query: 902 LSISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETLKEYGNVGIAVVR--IPSEFYYTE 959
+++SW P P +A Y+I + N + + L + + P E
Sbjct: 18 ITVSWTP-P----SATITGYRITYTPSNGPG-EPKELTVPPSSTSVTITGLTP----GVE 67
Query: 960 YEVKVQAINDVGPGPESEV 978
Y V V A+ D P
Sbjct: 68 YVVSVYALKDNQESPPLVG 86
>1buu_A Protein (mannose-binding protein A); lectin, HOST defense,
metalloprotein, sugar binding protein; 1.90A {Rattus
norvegicus} SCOP: d.169.1.1 h.1.1.1
Length = 168
Score = 56.3 bits (136), Expect = 2e-09
Identities = 13/88 (14%), Positives = 28/88 (31%), Gaps = 8/88 (9%)
Query: 26 ELRCPQHWVQYRDSCYRFVKSPLKTRNDAKLNCKSLDSDLANVNDADEHGFIMYQLFWQD 85
+L + + + K C L +A +A+E+ I Q+
Sbjct: 44 KLHAFSMGKKSGKKFFVTNHER-MPFSKVKALCSELRGTVAIPRNAEENKAI------QE 96
Query: 86 PQRRKWYFGGT-QQSPNLWVNEDGTNLN 112
+ + G T + + ++ G L
Sbjct: 97 VAKTSAFLGITDEVTEGQFMYVTGGRLT 124
>1x5j_A Neogenin; RGM binding, fibronectin type III domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
b.1.2.1
Length = 113
Score = 54.5 bits (131), Expect = 3e-09
Identities = 20/115 (17%), Positives = 33/115 (28%), Gaps = 15/115 (13%)
Query: 775 EGPPGLPGGVQVVEVHKTSATIQWTDGATNGR----PITHYKIIARTNWNSTWFNVSEHV 830
GP P GVQ + + I W D + +Y + +TN + + +
Sbjct: 6 SGPMMPPVGVQASILSHDTIRITWADNSLPKHQKITDSRYYTVRWKTNIPANTKYKNAN- 64
Query: 831 IGKEVDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPSPQYNTPADKP 885
+ L P + YEF V+ S + T
Sbjct: 65 --------ATTLSYLVTG-LKPNTLYEFSVMVTKGRRSSTWSMTAHGT-TFELSG 109
Score = 52.1 bits (125), Expect = 2e-08
Identities = 17/106 (16%), Positives = 31/106 (29%), Gaps = 16/106 (15%)
Query: 880 TPADKPYQAPSRIGGGGGKIGDLS-----ISWE--PLPREKQNAPNIYYKIFWRKKNDTE 932
+ + P P + + LS I+W LP+ ++ + YY + W+
Sbjct: 3 SGSSGPMMPPVGV-----QASILSHDTIRITWADNSLPKHQKITDSRYYTVRWKTNIPAN 57
Query: 933 FQSETLKEYGNVGIAVVRIPSEFYYTEYEVKVQAINDVGPGPESEV 978
+ + N + T YE V S
Sbjct: 58 TKYKNA----NATTLSYLVTGLKPNTLYEFSVMVTKGRRSSTWSMT 99
>2gi7_A GPVI protein; IG-like domains, blood clotting, cell adhesion; 2.40A
{Homo sapiens}
Length = 184
Score = 56.4 bits (136), Expect = 3e-09
Identities = 36/184 (19%), Positives = 58/184 (31%), Gaps = 27/184 (14%)
Query: 484 SIQAEPNFTIPLTDKHMDNQADLTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYF 543
S+QA P+ +PL +T C+ Y + +
Sbjct: 10 SLQALPSSLVPLEKP-------VTLRCQG-PPGVDLYRLEKLSSSRYQDQ---------- 51
Query: 544 IQDNVLTIRYLNPERDPAMYQCRAKNQLKTRYSSAQLRVLTLKPSFKKRPL--ESETYAG 601
VL I + Y+C +N S QL L F K L +
Sbjct: 52 ---AVLFIPAMKRS-LAGRYRCSYQNGSLWSLPSDQL-ELVATGVFAKPSLSAQPGPAVS 106
Query: 602 EGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTAT 661
GG+VT+ C +F K+G+ + + + I V+ SG Y C +
Sbjct: 107 SGGDVTLQCQTRY-GFDQFALYKEGDPAPYKNPERWYR-ASFPIITVTAAHSGTYRCYSF 164
Query: 662 NVHG 665
+
Sbjct: 165 SSRD 168
Score = 54.4 bits (131), Expect = 2e-08
Identities = 28/183 (15%), Positives = 54/183 (29%), Gaps = 25/183 (13%)
Query: 578 AQLRVLTLKPSFKKRPLESETYAGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKI 637
Q L KPS + + VT+ C + +K + +
Sbjct: 1 GQSGPLP-KPSLQ---ALPSSLVPLEKPVTLRCQGPP-GVDLYRLEKLSS-------SRY 48
Query: 638 FENGNLLISPVSRDDSGIYSCTATNVHGMDESKGRLIVLHGPSYYE---QLPPKITIAAH 694
+ L I + R +G Y C+ N +L ++ + + P +++
Sbjct: 49 QDQAVLFIPAMKRSLAGRYRCSYQNGSLWSLPSDQLELVATGVFAKPSLSAQPGPAVSSG 108
Query: 695 RNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEITNASFADAGE 754
++ L+C + G D + P I + A +G
Sbjct: 109 GDVTLQCQTRYG---FDQFALYKEG------DPAPYKNPE-RWYRASFPIITVTAAHSGT 158
Query: 755 YEC 757
Y C
Sbjct: 159 YRC 161
Score = 49.8 bits (119), Expect = 6e-07
Identities = 29/169 (17%), Positives = 54/169 (31%), Gaps = 20/169 (11%)
Query: 414 GDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYFENFNRILTIPNVKVEDQGEYICRASND 473
V L C V Y + S ++ +L IP +K G Y C N
Sbjct: 22 EKPVTLRCQG-PPGVDLYRLEKLSSSRYQDQ------AVLFIPAMKRSLAGRYRCSYQNG 74
Query: 474 RSALESSVTISIQAEPNFTIP----LTDKHMDNQADLTWTCEAFGVPDVTYSWFRNGELL 529
S + + A F P + + D+T C+ ++ ++ G
Sbjct: 75 SLWSLPSDQLELVATGVFAKPSLSAQPGPAVSSGGDVTLQCQT-RYGFDQFALYKEG--- 130
Query: 530 NSETLPLEDQDRYFIQDNVLTIRYLNPERDPAMYQCRAKNQLKTRYSSA 578
+ P ++ +R++ I + Y+C + + SA
Sbjct: 131 --DPAPYKNPERWYRAS--FPIITVTAA-HSGTYRCYSFSSRDPYLWSA 174
Score = 43.6 bits (103), Expect = 7e-05
Identities = 26/133 (19%), Positives = 41/133 (30%), Gaps = 18/133 (13%)
Query: 353 LYFSALEQIDAGNYSCNVQSKVSDTGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPEAP- 411
L+ A+++ AG Y C+ Q+ S+ +L F K A
Sbjct: 54 LFIPAMKRSLAGRYRCSYQN------------GSLWSLPSDQLELVATGVFAKPSLSAQP 101
Query: 412 ----KAGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYFENFNRILTIPNVKVEDQGEYI 467
+G V L+C + + G P P + I V G Y
Sbjct: 102 GPAVSSGGDVTLQCQTRYGFD-QFALYKEGDPAPYKNPERWYRASFPIITVTAAHSGTYR 160
Query: 468 CRASNDRSALESS 480
C + + R S
Sbjct: 161 CYSFSSRDPYLWS 173
Score = 28.6 bits (64), Expect = 7.2
Identities = 14/83 (16%), Positives = 25/83 (30%), Gaps = 16/83 (19%)
Query: 212 ITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVEDRGS 271
+TL C Y + +KE D + F + G+
Sbjct: 111 VTLQCQ-TRYGFDQFALYKEG---DPAPYKNPERWYRASFPI--------ITVTAAHSGT 158
Query: 272 YHCKASNKFG----SIISESVQL 290
Y C + + S S+ ++L
Sbjct: 159 YRCYSFSSRDPYLWSAPSDPLEL 181
>2dm4_A Sortilin-related receptor; beta-sandwich, sorting protein-related
receptor containing LDLR class A repeats, sorla; NMR
{Homo sapiens}
Length = 108
Score = 54.4 bits (131), Expect = 3e-09
Identities = 16/102 (15%), Positives = 27/102 (26%), Gaps = 14/102 (13%)
Query: 775 EGPPGLPGGVQVV--EVHKTSATIQWTDGATNGRPITHYKIIARTNWNSTWFNVSEHVIG 832
P P +Q+ + W I Y + + + W +
Sbjct: 5 SSGPDAPRNLQLSLPREAEGVIVGHWAPPIHTHGLIREYIVEYSRSGSKMWASQR----- 59
Query: 833 KEVDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSP 874
I+N L+ + Y +V A G G S
Sbjct: 60 ------AASNFTEIKN-LLVNTLYTVRVAAVTSRGIGNWSDS 94
Score = 47.8 bits (114), Expect = 6e-07
Identities = 18/101 (17%), Positives = 33/101 (32%), Gaps = 11/101 (10%)
Query: 880 TPADKPYQAPSRIGGGGGKIGDLSI--SWEPLPREKQNAPNIYYKIFWRKKNDTEFQSET 937
+ + P AP + + + I W P P + Y + + + + S+
Sbjct: 3 SGSSGP-DAPRNLQLSLPREAEGVIVGHWAP-P-IHTHGLIREYIVEYSRSGSKMWASQR 59
Query: 938 LKEYGNVGIAVVRIPSEFYYTEYEVKVQAINDVGPGPESEV 978
I + T Y V+V A+ G G S+
Sbjct: 60 AAS------NFTEIKNLLVNTLYTVRVAAVTSRGIGNWSDS 94
>3alu_A Lectin CEL-IV, C-type; C-type lectin, raffinose, sugar binding
protein; HET: RAF; 1.65A {Cucumaria echinata} PDB:
3als_A* 3alt_A*
Length = 157
Score = 55.6 bits (134), Expect = 3e-09
Identities = 15/102 (14%), Positives = 34/102 (33%), Gaps = 19/102 (18%)
Query: 29 CPQHWVQYRDSCYRFVKSPLKTRNDAKLNCKSL-----------DSDLANVNDADEHGFI 77
CP W + C+R + ++A+ C+ LA+++ A+ F+
Sbjct: 5 CPPLWTGFNGKCFRLFHNH-LNFDNAENACRQFGLASCSGDELATGHLASIHSAESQAFL 63
Query: 78 ------MYQLFWQDPQRRKWYFGGT-QQSPNLWVNEDGTNLN 112
+ Y G + + DG++++
Sbjct: 64 TELVKTSLPDLITGGWAPQVYIGMKVGSTNSDQTWTDGSSVD 105
>2edd_A Netrin receptor DCC; tumor suppressor protein DCC, colorectal
cancer suppressor, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 123
Score = 54.9 bits (132), Expect = 4e-09
Identities = 21/123 (17%), Positives = 37/123 (30%), Gaps = 15/123 (12%)
Query: 767 STKTTVIVEGPPGLPGGVQVVEVHKTSATIQWTDGATNGR----PITHYKIIARTNWNST 822
+ + P P GVQ V + + + W D + + Y + RT+++++
Sbjct: 8 FPTSVPDLSTPMLPPVGVQAVALTHDAVRVSWADNSVPKNQKTSEVRLYTVRWRTSFSAS 67
Query: 823 WFNVSEHVIGKEVDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPSPQYNTPA 882
YT L P + YEF V+ S + T
Sbjct: 68 A---KYKSEDTTSLSYT------ATG-LKPNTMYEFSVMVTKNRRSSTWSMTAHAT-TYE 116
Query: 883 DKP 885
Sbjct: 117 ASG 119
Score = 47.6 bits (113), Expect = 1e-06
Identities = 18/116 (15%), Positives = 32/116 (27%), Gaps = 20/116 (17%)
Query: 872 SSPSPQYNTPADKPYQAPSRIGGGGGKIGDLS-----ISWEP--LPREKQNAPNIYYKIF 924
SS P P P + + L+ +SW +P+ ++ + Y +
Sbjct: 5 SSGFPTSVPDLSTPMLPPVGV-----QAVALTHDAVRVSWADNSVPKNQKTSEVRLYTVR 59
Query: 925 WRKKNDTEFQSETLKEYGNVGIAVVR--IPSEFYYTEYEVKVQAINDVGPGPESEV 978
WR + ++ P T YE V + S
Sbjct: 60 WRTSFSASAKYKSED--TTSLSYTATGLKP----NTMYEFSVMVTKNRRSSTWSMT 109
>3pv7_A B7-H6, IG-like domain-containing protein
DKFZP686O24166/DKFZP686I21167; NK cell receptor,
receptor-ligand complex, immune system; HET: NAG; 2.00A
{Homo sapiens} PDB: 3pv6_A*
Length = 248
Score = 57.4 bits (138), Expect = 5e-09
Identities = 23/129 (17%), Positives = 51/129 (39%), Gaps = 13/129 (10%)
Query: 453 LTIPNVKVEDQGEYICRASNDRSALESSVTISIQAEPNFTIPLTDKHMDNQADLTWTCEA 512
L +P +++E+ GEY C + +V + + A P + L D+ + + + CE+
Sbjct: 84 LRLPGIQLEEAGEYRCEVVVTPLKAQGTVQLEVVASPASRL-LLDQVGMKENEDKYMCES 142
Query: 513 FGV--PDVTYSWFRNGELLNSE---------TLPLEDQDRYFIQDNVLTIRYLNPERDPA 561
G + +W + + +++ D F + L + + E
Sbjct: 143 SGFYPEAINITWEKQTQKFPHPIEISEDVITGPTIKNMDGTFNVTSCLKL-NSSQEDPGT 201
Query: 562 MYQCRAKNQ 570
+YQC ++
Sbjct: 202 VYQCVVRHA 210
Score = 35.8 bits (82), Expect = 0.048
Identities = 15/113 (13%), Positives = 29/113 (25%), Gaps = 18/113 (15%)
Query: 684 QLPPKITIAAHRNLQLRCSAHTEELLDVAYI---WT----HNGVRIGNMDLNELETPNIN 736
+ N+ + C+ + L++ + W + +
Sbjct: 8 MAGGTQITPLNDNVTIFCNIFYSQPLNITSMGITWFWKSLTFDKEVKVFEFFGDHQEAFR 67
Query: 737 IDGGL-----------LEITNASFADAGEYECVVKSTVGKISTKTTVIVEGPP 778
+ L + +AGEY C V T K + V P
Sbjct: 68 PGAIVSPWRLKSGDASLRLPGIQLEEAGEYRCEVVVTPLKAQGTVQLEVVASP 120
Score = 35.0 bits (80), Expect = 0.077
Identities = 30/197 (15%), Positives = 57/197 (28%), Gaps = 35/197 (17%)
Query: 328 YYWARDYFPNFVEE---DKRVFVSYDGALYFSALEQIDAGNYSCNVQSKVSDTGRNGPFF 384
+ + D+ F S D +L ++ +AG Y C V
Sbjct: 56 FEFFGDHQEAFRPGAIVSPWRLKSGDASLRLPGIQLEEAGEYRCEVVVT----------- 104
Query: 385 PLKVFPHSNFQQLKFPNNFPKTFPEAPKAGDKVRLECVAFG-YPVP-SYNWTRRGSPLPR 442
PLK + + P + + ++ + C + G YP + W ++ P
Sbjct: 105 PLKAQGTVQLEVVASPASRL-LLDQVGMKENEDKYMCESSGFYPEAINITWEKQTQKFPH 163
Query: 443 NAYFEN--------------FNR--ILTIPNVKVEDQGEYICRASND--RSALESSVTIS 484
FN L + + + + Y C + + L S+ T++
Sbjct: 164 PIEISEDVITGPTIKNMDGTFNVTSCLKLNSSQEDPGTVYQCVVRHASLHTPLRSNFTLT 223
Query: 485 IQAEPNFTIPLTDKHMD 501
TD
Sbjct: 224 AARHSLSETEKTDNFSA 240
Score = 35.0 bits (80), Expect = 0.094
Identities = 20/150 (13%), Positives = 49/150 (32%), Gaps = 13/150 (8%)
Query: 640 NGNLLISPVSRDDSGIYSCTATNVHGMDESKGRLIVLHGPSYYEQLPPKITIAAHRNLQL 699
+ +L + + +++G Y C + +L V+ P+ L ++ + + +
Sbjct: 81 DASLRLPGIQLEEAGEYRCEVVVTPLKAQGTVQLEVVASPA-SRLLLDQVGMKENEDK-Y 138
Query: 700 RCSAHTEELLDVAYIWTHNGVRIGNMDLN----ELETPNINIDG-----GLLEITNASFA 750
C + + W + + N+DG L++ ++
Sbjct: 139 MCESSGFYPEAINITWEKQTQKFPHPIEISEDVITGPTIKNMDGTFNVTSCLKLNSSQED 198
Query: 751 DAGEYECVV--KSTVGKISTKTTVIVEGPP 778
Y+CVV S + + T+
Sbjct: 199 PGTVYQCVVRHASLHTPLRSNFTLTAARHS 228
>1fvu_A Botrocetin alpha chain; VON WILLBRAND factor modulator, C-type
lectin, metal- binding, loop exchanged dimer, toxin;
1.80A {Bothrops jararaca} SCOP: d.169.1.1 PDB: 1ijk_B
1u0n_B 1u0o_A
Length = 133
Score = 54.4 bits (131), Expect = 7e-09
Identities = 16/91 (17%), Positives = 32/91 (35%), Gaps = 8/91 (8%)
Query: 29 CPQHWVQYRDSCYRFVKSPLKTRNDAKLNCKS--LDSDLANVNDADEHGFIMYQLFWQDP 86
CP W Y +CY+F + DA+ C L ++ + + L ++
Sbjct: 2 CPSGWSSYEGNCYKFFQQK-MNWADAERFCSEQAKGGHLVSIKIYSKEKDFVGDLVTKNI 60
Query: 87 QRRKWYF-----GGTQQSPNLWVNEDGTNLN 112
Q Y ++ DG++++
Sbjct: 61 QSSDLYAWIGLRVENKEKQCSSEWSDGSSVS 91
>2rb8_A Tenascin; beta sheet,loop design, alternative splicing, cell
adhesion, coiled coil, EGF-like domain, extracellular
matrix, glycoprotein; 1.45A {Homo sapiens} PDB: 2rbl_A
1ten_A
Length = 104
Score = 52.8 bits (127), Expect = 1e-08
Identities = 19/105 (18%), Positives = 36/105 (34%), Gaps = 14/105 (13%)
Query: 781 PGGVQVVEVHKTSATIQWTDGATNGRPITHYKIIARTNWNSTWFNVSEHVIGKEVDRYTG 840
P ++V +V T+A I W + P+ +++ +D
Sbjct: 6 PSQIEVKDVTDTTALITWM--PPSQ-PVDGFELTYGIKDVPGDR--------TTIDLTED 54
Query: 841 RKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPSPQYNTPADKP 885
+ SI N L P + YE +I+ P+ + + T
Sbjct: 55 ENQYSIGN-LKPDTEYEVSLISRRGDMSSNPAKET--FTTGLAAA 96
Score = 30.1 bits (68), Expect = 0.87
Identities = 13/75 (17%), Positives = 25/75 (33%), Gaps = 12/75 (16%)
Query: 902 LSISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETLKEYGNVGIAVVR--IPSEFYYTE 959
I+W P P + P +++ + K+ T+ + + P TE
Sbjct: 19 ALITWMP-P----SQPVDGFELTYGIKDVPG-DRTTIDLTEDENQYSIGNLKP----DTE 68
Query: 960 YEVKVQAINDVGPGP 974
YEV + +
Sbjct: 69 YEVSLISRRGDMSSN 83
>2zg1_A Sialic acid-binding IG-like lectin 5; siglec-5 inhibitory receptor,
two-domain structure, V-SET, C2-SET, IG-like domain,
6'-sialyllactose complex; HET: SIA; 2.70A {Homo sapiens}
PDB: 2zg3_A* 2zg2_A
Length = 214
Score = 55.2 bits (132), Expect = 1e-08
Identities = 32/171 (18%), Positives = 55/171 (32%), Gaps = 25/171 (14%)
Query: 516 PDVTYSWFRNGELLNSETL----------PLEDQDRYFIQDNV------LTIRYLNPERD 559
P + WFR+GE+ + E Q R+ + +V L+I E D
Sbjct: 35 PPLYVYWFRDGEIPYYAEVVATNNPDRRVKPETQGRFRLLGDVQKKNCSLSIGDARME-D 93
Query: 560 PAMYQCRAKNQLKTRYSSAQLRV-LTLKPSFKKRPLESETYAGEGGNVTIFC----NPEA 614
Y R + +YS Q ++ L + +K + G + C + EA
Sbjct: 94 TGSYFFRVERGRDVKYSYQQNKLNLEVTALIEKPDIHFLEPLESGRPTRLSCSLPGSCEA 153
Query: 615 APKPKFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTATNVHG 665
P F W + + + L ++P D +C
Sbjct: 154 GPPLTFSWTGNALSPLDP---ETTRSSELTLTPRPEDHGTNLTCQMKRQGA 201
Score = 51.8 bits (123), Expect = 2e-07
Identities = 29/170 (17%), Positives = 55/170 (32%), Gaps = 21/170 (12%)
Query: 422 VAFGYPVPSYNWTRRG-SPLPRNAYFENFNRILTIPNVKVEDQGEYICRASNDR----SA 476
VA P +G L + +N + L+I + ++ED G Y R R S
Sbjct: 54 VATNNPDRRVKPETQGRFRLLGDVQKKNCS--LSIGDARMEDTGSYFFRVERGRDVKYSY 111
Query: 477 LESSVTISIQAEPNFTIPLTDKHMDNQADLTWTCE----AFGVPDVTYSWFRNGELLNSE 532
++ + + + A + +++ +C P +T+SW N
Sbjct: 112 QQNKLNLEVTALIEKPDIHFLEPLESGRPTRLSCSLPGSCEAGPPLTFSWTGNALSPLDP 171
Query: 533 TLPLEDQDRYFIQDNVLTIRYLNPERDPAMYQCRAKNQLKTRYSSAQLRV 582
LT+ PE C+ K Q + +++
Sbjct: 172 ETTRSS---------ELTLT-PRPEDHGTNLTCQMKRQGAQVTTERTVQL 211
Score = 51.4 bits (122), Expect = 3e-07
Identities = 20/138 (14%), Positives = 36/138 (26%), Gaps = 13/138 (9%)
Query: 353 LYFSALEQIDAGNYSCNVQSKVSDTGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPEAPK 412
L D G+Y V R N + F E +
Sbjct: 84 LSIGDARMEDTGSYFFRV-------ERGRDVKYSYQQNKLNLEVTALIEKPDIHFLEPLE 136
Query: 413 AGDKVRLECV----AFGYPVPSYNWTRRGSPLPRNAYFENFNRILTIPNVKVEDQGEYIC 468
+G RL C P +++WT + LT+ + C
Sbjct: 137 SGRPTRLSCSLPGSCEAGPPLTFSWTGNALSPLDPET--TRSSELTLTPRPEDHGTNLTC 194
Query: 469 RASNDRSALESSVTISIQ 486
+ + + + T+ +
Sbjct: 195 QMKRQGAQVTTERTVQLN 212
Score = 47.5 bits (112), Expect = 5e-06
Identities = 33/207 (15%), Positives = 62/207 (29%), Gaps = 43/207 (20%)
Query: 602 EGGNVTIFC-------NPEAAPKPKFVWKKDGNIIGSG-----------------GRRKI 637
EG V + C + ++P W +DG I GR ++
Sbjct: 14 EGLCVLVPCSFSYPWRSWYSSPPLYVYWFRDGEIPYYAEVVATNNPDRRVKPETQGRFRL 73
Query: 638 F-----ENGNLLISPVSRDDSGIYSC---TATNVHGMDESKGRLIVLHGPSYYEQLPPKI 689
+N +L I +D+G Y +V + + + +
Sbjct: 74 LGDVQKKNCSLSIGDARMEDTGSYFFRVERGRDVKYSYQQNKLNLEVTALIEKPDIHFLE 133
Query: 690 TIAAHRNLQLRCSAHT--EELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEITNA 747
+ + R +L CS E + + WT N + L +T
Sbjct: 134 PLESGRPTRLSCSLPGSCEAGPPLTFSWTGNALS---------PLDPETTRSSELTLTPR 184
Query: 748 SFADAGEYECVVKSTVGKISTKTTVIV 774
C +K +++T+ TV +
Sbjct: 185 PEDHGTNLTCQMKRQGAQVTTERTVQL 211
Score = 33.7 bits (76), Expect = 0.21
Identities = 31/187 (16%), Positives = 56/187 (29%), Gaps = 32/187 (17%)
Query: 211 DITLSCY-----AGGYPNPSY--EWFKEDY--VQDRLVAN-----LIDPLSDKRFTLSG- 255
+ + C Y +P WF++ +VA + P + RF L G
Sbjct: 17 CVLVPCSFSYPWRSWYSSPPLYVYWFRDGEIPYYAEVVATNNPDRRVKPETQGRFRLLGD 76
Query: 256 -----GNLIINDPRQVEDRGSYHCKASNKFG---SIISESVQLAFGFIGEFNLKRAPEIG 307
+L I D ++ED GSY + S + L + E E
Sbjct: 77 VQKKNCSLSIGD-ARMEDTGSYFFRVERGRDVKYSYQQNKLNLEVTALIEKPDIHFLEPL 135
Query: 308 NQNWGKAMFCDPPTNYPG---VNYYWARDYFPNFVEEDKRVFVSYDGALYFSALEQIDAG 364
+ C P + + + W + E + L + +
Sbjct: 136 ESGRPTRLSCSLPGSCEAGPPLTFSWTGNALSPLDPE-----TTRSSELTLTPRPEDHGT 190
Query: 365 NYSCNVQ 371
N +C ++
Sbjct: 191 NLTCQMK 197
Score = 33.3 bits (75), Expect = 0.25
Identities = 12/79 (15%), Positives = 23/79 (29%), Gaps = 14/79 (17%)
Query: 213 TLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVEDRGSY 272
+L P ++ W T L + PR + +
Sbjct: 146 SLPGSCEAGPPLTFSWTGNAL------------SPLDPETTRSSELTLT-PRPEDHGTNL 192
Query: 273 HCKASNKFGSIISE-SVQL 290
C+ + + +E +VQL
Sbjct: 193 TCQMKRQGAQVTTERTVQL 211
>2dkm_A Collagen alpha-1(XX) chain; FN3 domain, KIAA1510, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 104
Score = 51.8 bits (124), Expect = 2e-08
Identities = 22/119 (18%), Positives = 36/119 (30%), Gaps = 19/119 (15%)
Query: 767 STKTTVIVEGPPGLPGGVQVVEVHKTSATIQWTDGATNGRPITHYKIIARTNWNSTWFNV 826
S+ ++ P P + + V + + W THY +
Sbjct: 2 SSGSSG----PLPPPRALTLAAVTPRTVHLTWQ----PSAGATHYLV--------RCSPA 45
Query: 827 SEHVIGKEVDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPSPQYNTPADKP 885
S +E + GR E ++ L P YE V + E + TP P
Sbjct: 46 SPKGEEEEREVQVGRPEVLLDG-LEPGRDYEVSVQSLRGPEGSEARGIRAR--TPTSGP 101
Score = 29.8 bits (67), Expect = 1.4
Identities = 11/79 (13%), Positives = 27/79 (34%), Gaps = 13/79 (16%)
Query: 902 LSISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETLKEYGNVGIAVVR--IPSEFYYTE 959
+ ++W+P +A +Y + + + E + ++ P +
Sbjct: 25 VHLTWQP------SAGATHYLVRCSPASPKG-EEEEREVQVGRPEVLLDGLEP----GRD 73
Query: 960 YEVKVQAINDVGPGPESEV 978
YEV VQ++ +
Sbjct: 74 YEVSVQSLRGPEGSEARGI 92
>3m45_A Cell adhesion molecule 2; IG fold, dimer, disulfide bond,
glycoprotein, immunoglobulin membrane, transmembrane;
HET: NAG; 2.21A {Mus musculus}
Length = 108
Score = 51.8 bits (124), Expect = 3e-08
Identities = 19/90 (21%), Positives = 29/90 (32%), Gaps = 13/90 (14%)
Query: 602 EGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENG------------NLLISPVS 649
EGG + C + W +K + ++ +S VS
Sbjct: 20 EGGTAILTCRVDQNDNTSLQWSNPAQQTLYFDDKKALRDNRIELVRASWHELSISVSDVS 79
Query: 650 RDDSGIYSCTATNVHGMDESKGRLIVLHGP 679
D G Y+C+ + SK L VL P
Sbjct: 80 LSDEGQYTCSL-FTMPVKTSKAYLTVLGVP 108
Score = 47.9 bits (114), Expect = 6e-07
Identities = 15/90 (16%), Positives = 27/90 (30%), Gaps = 14/90 (15%)
Query: 413 AGDKVRLECVAFGYPVPSYNWTRRGSPLP--RNAYFENFNRI-----------LTIPNVK 459
G L C S W+ + NRI +++ +V
Sbjct: 20 EGGTAILTCRVDQNDNTSLQWSNPAQQTLYFDDKKALRDNRIELVRASWHELSISVSDVS 79
Query: 460 VEDQGEYICRASNDRSALESSVTISIQAEP 489
+ D+G+Y C S +++ P
Sbjct: 80 LSDEGQYTCSLFTM-PVKTSKAYLTVLGVP 108
Score = 46.4 bits (110), Expect = 2e-06
Identities = 18/109 (16%), Positives = 39/109 (35%), Gaps = 9/109 (8%)
Query: 676 LHGPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPN- 734
+ G L +T+ L C + + W++ + D + N
Sbjct: 3 VKGSQGQFPLTQNVTVVEGGTAILTCRVDQNDNTSLQ--WSNPAQQTLYFDDKKALRDNR 60
Query: 735 ---INIDGG--LLEITNASFADAGEYECVVKSTVGKISTKTTVIVEGPP 778
+ + +++ S +D G+Y C + T+ ++K + V G P
Sbjct: 61 IELVRASWHELSISVSDVSLSDEGQYTCSL-FTMPVKTSKAYLTVLGVP 108
Score = 42.5 bits (100), Expect = 4e-05
Identities = 17/86 (19%), Positives = 27/86 (31%), Gaps = 10/86 (11%)
Query: 210 NDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLSGG-----NLIINDPR 264
L+C N S +W Q L + L D R L ++ ++D
Sbjct: 22 GTAILTCRVDQNDNTSLQWSNPA--QQTLYFDDKKALRDNRIELVRASWHELSISVSDV- 78
Query: 265 QVEDRGSYHCKASNKFGSIISESVQL 290
+ D G Y C + + L
Sbjct: 79 SLSDEGQYTCSLFTM--PVKTSKAYL 102
>1j8k_A Fibronectin; EDA, TYPEIII domain, protein binding; NMR {Homo
sapiens} SCOP: b.1.2.1
Length = 94
Score = 50.1 bits (120), Expect = 7e-08
Identities = 17/93 (18%), Positives = 32/93 (34%), Gaps = 12/93 (12%)
Query: 781 PGGVQVVEVHKTSATIQWTDGATNGRPITHYKIIARTNWNSTWFNVSEHVIGKEVDRYTG 840
P G+ +V S I W + G ++ Y++ + + E D
Sbjct: 5 PKGLAFTDVDVDSIKIAWE--SPQG-QVSRYRVTYSSPEDGIH--ELFPAPDGEEDTAE- 58
Query: 841 RKEASIENVLVPWSTYEFKVIAGNELGYGEPSS 873
++ L P S Y V+A ++ +P
Sbjct: 59 -----LQG-LRPGSEYTVSVVALHDDMESQPLI 85
Score = 32.0 bits (73), Expect = 0.16
Identities = 15/75 (20%), Positives = 27/75 (36%), Gaps = 12/75 (16%)
Query: 902 LSISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETLKEYGNVGIAVVR--IPSEFYYTE 959
+ I+WE P Y++ + D + + G A ++ P +E
Sbjct: 18 IKIAWES-P----QGQVSRYRVTYSSPEDGIHELFPAPD-GEEDTAELQGLRP----GSE 67
Query: 960 YEVKVQAINDVGPGP 974
Y V V A++D
Sbjct: 68 YTVSVVALHDDMESQ 82
>2h41_A Fibronectin; beta sandwich, cell adhesion, structural protein; NMR
{Homo sapiens} PDB: 2h45_A
Length = 95
Score = 50.2 bits (120), Expect = 7e-08
Identities = 13/103 (12%), Positives = 29/103 (28%), Gaps = 14/103 (13%)
Query: 776 GPPGLPGGVQVVEVHKTSATIQWTDGATNGRPITHYKI-IARTNWNSTWFNVSEHVIGKE 834
G + V E+ +S + W + ++ +++ + +
Sbjct: 4 GSHLVATSESVTEITASSFVVSWVSAS---DTVSGFRVEYELSEEGDEP---QYLDLPST 57
Query: 835 VDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPSPQ 877
I + L+P Y V +E G + Q
Sbjct: 58 ATSVN------IPD-LLPGRKYIVNVYQISEDGEQSLILSTSQ 93
Score = 27.5 bits (61), Expect = 7.8
Identities = 10/75 (13%), Positives = 22/75 (29%), Gaps = 8/75 (10%)
Query: 902 LSISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETLKEYGNVGIAVVRIPSEFYYTEYE 961
+SW + + +++ + + + V IP +Y
Sbjct: 22 FVVSWVS-ASDTVS----GFRVEYELSEEGDEPQYL---DLPSTATSVNIPDLLPGRKYI 73
Query: 962 VKVQAINDVGPGPES 976
V V I++ G
Sbjct: 74 VNVYQISEDGEQSLI 88
>3rbg_A Cytotoxic and regulatory T-cell molecule; IGV, crtam, structural
genomics, PSI-biology, NEW YORK struc genomics research
consortium, nysgrc; 2.30A {Homo sapiens}
Length = 124
Score = 50.8 bits (121), Expect = 8e-08
Identities = 21/100 (21%), Positives = 37/100 (37%), Gaps = 14/100 (14%)
Query: 413 AGDKVRLECVAFGYPVPSYNWTRR--------GSPLPRNAYFENFNRI-----LTIPNVK 459
G + L+CV S W P+ +N+ ++ + +T+PNV
Sbjct: 15 EGQTLTLKCVTSLRKNSSLQWLTPSGFTIFLNEYPVLKNSKYQLLHHSANQLSITVPNVT 74
Query: 460 VEDQGEYICRASNDRSALESSVTISIQAEPNFTIPLTDKH 499
++D+G Y C +D S V + + A H
Sbjct: 75 LQDEGVYKCLHYSD-SVSTKEVKVIVLATMKGEFCRYPSH 113
Score = 50.0 bits (119), Expect = 2e-07
Identities = 15/91 (16%), Positives = 28/91 (30%), Gaps = 13/91 (14%)
Query: 602 EGGNVTIFCNPEAAPKPKFVW-KKDGNIIGSGGRRKI-----------FENGNLLISPVS 649
EG +T+ C W G I + ++ + V+
Sbjct: 15 EGQTLTLKCVTSLRKNSSLQWLTPSGFTIFLNEYPVLKNSKYQLLHHSANQLSITVPNVT 74
Query: 650 RDDSGIYSCTATNVHGMDESKGRLIVLHGPS 680
D G+Y C + + + ++IVL
Sbjct: 75 LQDEGVYKCLHYS-DSVSTKEVKVIVLATMK 104
Score = 48.5 bits (115), Expect = 6e-07
Identities = 20/133 (15%), Positives = 44/133 (33%), Gaps = 23/133 (17%)
Query: 684 QLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINI-----D 738
IT+ + L L+C + + ++ T +G I + L+ + +
Sbjct: 6 NHTETITVEEGQTLTLKCVTSLRKNSSLQWL-TPSGFTIFLNEYPVLKNSKYQLLHHSAN 64
Query: 739 GGLLEITNASFADAGEYECVVKSTVGKISTKTTVIVEGPPGLPGGVQVVEVHKTSATIQW 798
+ + N + D G Y+C+ + + + VIV
Sbjct: 65 QLSITVPNVTLQDEGVYKCLH-YSDSVSTKEVKVIVLATMKGEF---------------- 107
Query: 799 TDGATNGRPITHY 811
++ RP+ H+
Sbjct: 108 CRYPSHWRPLEHH 120
Score = 45.0 bits (106), Expect = 9e-06
Identities = 15/85 (17%), Positives = 34/85 (40%), Gaps = 10/85 (11%)
Query: 211 DITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTL-----SGGNLIINDPRQ 265
+TL C N S +W + N L + ++ L + ++ + +
Sbjct: 18 TLTLKCVTSLRKNSSLQWLTPS--GFTIFLNEYPVLKNSKYQLLHHSANQLSITVPNV-T 74
Query: 266 VEDRGSYHCKASNKFGSIISESVQL 290
++D G Y C + S+ ++ V++
Sbjct: 75 LQDEGVYKCLHYS--DSVSTKEVKV 97
>2cuh_A Tenascin-X; fibronectin type III domain, extracellular matrix,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
b.1.2.1
Length = 115
Score = 50.5 bits (121), Expect = 9e-08
Identities = 16/109 (14%), Positives = 31/109 (28%), Gaps = 16/109 (14%)
Query: 777 PPGLPGGVQVVEVHKTSATIQWTDGATNGRPITHYKIIARTNWNSTWFNVSEHVIGKEVD 836
P P ++ + + + A + W P+ Y I +
Sbjct: 7 GPDGPTQLRALNLTEGFAVLHWKPPQN---PVDTYDIQVTAPGAPPL----QAETPGSAV 59
Query: 837 RYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPSPQYNTPADKP 885
Y + + LV + Y V P+S + + T + P
Sbjct: 60 DYP------LHD-LVLHTNYTATVRGLRGPNLTSPASIT--FTTGLEAP 99
Score = 31.3 bits (71), Expect = 0.50
Identities = 12/79 (15%), Positives = 22/79 (27%), Gaps = 14/79 (17%)
Query: 902 LSISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETLKEYGNVGIAVVR--IPSEFYYTE 959
+ W+P P Y I Q+ET G+ + + T
Sbjct: 24 AVLHWKP-----PQNPVDTYDIQVTAPGAPPLQAET---PGSAVDYPLHDLVLH----TN 71
Query: 960 YEVKVQAINDVGPGPESEV 978
Y V+ + + +
Sbjct: 72 YTATVRGLRGPNLTSPASI 90
>1wk1_A Hypothetical protein YK1067A12; lectin C-type domain, structural
genomics, riken structural genomics/proteomics
initiative, RSGI; NMR {Caenorhabditis elegans} SCOP:
d.169.1.1
Length = 150
Score = 51.4 bits (123), Expect = 1e-07
Identities = 11/79 (13%), Positives = 23/79 (29%), Gaps = 6/79 (7%)
Query: 35 QYRDSCYRFVKSPLKTRNDAKLNCKSLDSDLANVNDADEHGFIMYQLFWQDPQRRKWYFG 94
+ A+ C S LA+ D++ F +++ G
Sbjct: 5 SSGVKFLTVNDDI-LSMPQARNFCASAGGYLADDLGDDKNNFYSSIA-----ANTQFWIG 58
Query: 95 GTQQSPNLWVNEDGTNLNE 113
+ S + + G +N
Sbjct: 59 LFKNSDGQFYWDRGQGINP 77
>1ugn_A LIR1, leukocyte immunoglobulin-like receptor 1; immunoglobulin-like
folds, immune system; 1.80A {Homo sapiens} SCOP: b.1.1.4
b.1.1.4 PDB: 3d2u_D* 1g0x_A 1p7q_D 1ufu_A 1vdg_A 2gw5_A
2dyp_D 2otp_A 3q2c_A
Length = 198
Score = 52.1 bits (125), Expect = 1e-07
Identities = 26/165 (15%), Positives = 52/165 (31%), Gaps = 15/165 (9%)
Query: 602 EGGNVTIFC--NPEAAPKPKFVWKKDGNIIGSGGRR--KIFENGNLLISPVSRDDSGIYS 657
+G VT+ C E ++ ++ R ++ + G I ++ + +G Y
Sbjct: 18 QGSPVTLRCQGGQETQ---EYRLYREKKTAPWITRIPQELVKKGQFPIPSITWEHTGRYR 74
Query: 658 CTATNVHGM--DESKGRLIVLHGPSYYEQL--PPKITIAAHRNLQLRCSAHTEELLDVAY 713
C + + S +V+ G L P + + N+ L+C + +
Sbjct: 75 CYYGSDTAGRSESSDPLELVVTGAYIKPTLSAQPSPVVNSGGNVTLQCDSQVA---FDGF 131
Query: 714 IWTHNGVRIGNMDLNELETPNINIDGGLLEITNASFADAGEYECV 758
I G LN + + S + Y C
Sbjct: 132 ILCKEGEDEHPQCLNSQPHAR-GSSRAIFSVGPVSPSRRWWYRCY 175
Score = 52.1 bits (125), Expect = 1e-07
Identities = 38/192 (19%), Positives = 60/192 (31%), Gaps = 29/192 (15%)
Query: 484 SIQAEPNFTIPLTDKHMDNQADLTWTCEAFGVPDVTYSWFRNGELLNSET-LPLEDQDRY 542
++ AEP I +T C+ G Y +R + T +P E +
Sbjct: 7 TLWAEPGSVITQGSP-------VTLRCQG-GQETQEYRLYREKKTAPWITRIPQELVKK- 57
Query: 543 FIQDNVLTIRYLNPERDPAMYQCRAKNQLKTRY-SSAQLRVLTL----KPSFKKRPLESE 597
I + E Y+C + R SS L ++ KP+ +P
Sbjct: 58 ----GQFPIPSITWE-HTGRYRCYYGSDTAGRSESSDPLELVVTGAYIKPTLSAQP---S 109
Query: 598 TYAGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENG-----NLLISPVSRDD 652
GGNVT+ C+ F+ K+G + PVS
Sbjct: 110 PVVNSGGNVTLQCD-SQVAFDGFILCKEGEDEHPQCLNSQPHARGSSRAIFSVGPVSPSR 168
Query: 653 SGIYSCTATNVH 664
Y C A + +
Sbjct: 169 RWWYRCYAYDSN 180
Score = 41.0 bits (96), Expect = 6e-04
Identities = 30/165 (18%), Positives = 54/165 (32%), Gaps = 14/165 (8%)
Query: 414 GDKVRLECVAFGYPVPSYNWTRRGSPLP---RNAYFENFNRILTIPNVKVEDQGEYICRA 470
G V L C G Y R P R IP++ E G Y C
Sbjct: 19 GSPVTLRCQG-GQETQEYRLYREKKTAPWITRIPQELVKKGQFPIPSITWEHTGRYRCYY 77
Query: 471 SND------RSALESSVTISIQAEPNFTIPLTDKHMDNQADLTWTCEAFGVPDVTYSWFR 524
+D S V +P + +++ ++T C++ V + +
Sbjct: 78 GSDTAGRSESSDPLELVVTGAYIKPTLSA-QPSPVVNSGGNVTLQCDS-QVAFDGFILCK 135
Query: 525 NGELLNSETLPLEDQDRYFIQDNVLTIRYLNPERDPAMYQCRAKN 569
GE + + L + R + ++ ++P Y+C A +
Sbjct: 136 EGEDEHPQCLNSQPHARGSSRAI-FSVGPVSPS-RRWWYRCYAYD 178
Score = 40.6 bits (95), Expect = 9e-04
Identities = 25/178 (14%), Positives = 41/178 (23%), Gaps = 31/178 (17%)
Query: 317 CDPPTNYPGVNYYWARDYFPNFVEEDKRVFVSYDGALYFSALEQIDAGNYSCNVQSKVSD 376
C Y R+ + G ++ G Y C S
Sbjct: 26 CQGGQ--ETQEYRLYREKKTAPWITRIPQELVKKGQFPIPSITWEHTGRYRCYYGSD--- 80
Query: 377 TGRNGPFFPLKVFPHSNFQQLKFPNNFPK-----TFPEAPKAGDKVRLECVAFGYPV--- 428
S+ +L + K +G V L+C +
Sbjct: 81 --------TAGRSESSDPLELVVTGAYIKPTLSAQPSPVVNSGGNVTLQCDSQVAFDGFI 132
Query: 429 ------PSYNWTRRGSPLPRNAYFENFNRILTIPNVKVEDQGEYICRASNDRSALESS 480
+ P R + F ++ V + Y C A + S E S
Sbjct: 133 LCKEGEDEHPQCLNSQPHARGSSRAIF----SVGPVSPSRRWWYRCYAYDSNSPYEWS 186
Score = 30.2 bits (68), Expect = 2.2
Identities = 16/89 (17%), Positives = 22/89 (24%), Gaps = 15/89 (16%)
Query: 687 PKITIAAH--------RNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINID 738
PK T+ A + LRC E Y + E
Sbjct: 4 PKPTLWAEPGSVITQGSPVTLRCQGGQE---TQEYRLYREKKTAPWITRIPQELVKKGQ- 59
Query: 739 GGLLEITNASFADAGEYECVVKSTVGKIS 767
I + ++ G Y C S S
Sbjct: 60 ---FPIPSITWEHTGRYRCYYGSDTAGRS 85
Score = 29.8 bits (67), Expect = 3.0
Identities = 16/86 (18%), Positives = 26/86 (30%), Gaps = 16/86 (18%)
Query: 212 ITLSCYAGGYPNPSYEWFKED---YVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVED 268
+TL C + KE + Q S F++ P
Sbjct: 118 VTLQCD-SQVAFDGFILCKEGEDEHPQCLNSQPHARGSSRAIFSVG--------PVSPSR 168
Query: 269 RGSYHCKASNKFG----SIISESVQL 290
R Y C A + S+ S+ ++L
Sbjct: 169 RWWYRCYAYDSNSPYEWSLPSDLLEL 194
>3lb6_C IL-13, interleukin-13 receptor subunit alpha-2; cytokine, decoy,
decoy receptor, glycoprotein; HET: MLY NAG; 3.05A {Homo
sapiens} PDB: 3lb6_D*
Length = 380
Score = 54.0 bits (129), Expect = 1e-07
Identities = 19/191 (9%), Positives = 44/191 (23%), Gaps = 17/191 (8%)
Query: 777 PPGLPGGVQVVEVHKTSATIQWTDGATNGRPITHYKIIARTNWNSTWFNVSEHVIGKEVD 836
P + V + W G T+Y + +++
Sbjct: 136 PETXVQDMDCVYYNWQYLLCSWKPGIGVLLD-TNYNLFYWYEGLDHALQCVDYI-----K 189
Query: 837 RYTGRKEASIENV-LVPWSTYEFKVIAGNELGYGEPSSPSPQYNTPADKPYQAPSRIGGG 895
+ + + V +E S + P +
Sbjct: 190 ADGQNIGCRFPYLEASDYKDFYICVNGSSENKPI--RSSYFTFQLQNIVKPLPPVYLTFT 247
Query: 896 GGKIGDLSISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETLKEYGNVGIAVVRIPSEF 955
++ + W P A Y+I R+ + T + E + +
Sbjct: 248 RESSCEIKLKWSI-PLGPIPARCFDYEIEIREDDTTLVTATVENE-------TYTLKTTN 299
Query: 956 YYTEYEVKVQA 966
+ V++
Sbjct: 300 ETRQLCFVVRS 310
Score = 45.2 bits (106), Expect = 7e-05
Identities = 34/232 (14%), Positives = 62/232 (26%), Gaps = 25/232 (10%)
Query: 755 YECVVKSTVGKISTKTTVIVEGPPGLPGGVQVVEVHKTSA-TIQWT---DGATNGRPITH 810
Y ++ +T G S+ T I PP ++V+ +QW
Sbjct: 12 YTFLISTTFGCTSSSDTEIKVNPPQ---DFEIVDPGYLGYLYLQWQPPLSLDHFKECTVE 68
Query: 811 YKIIARTNWNSTWFNVSEHVIGKEVDRYTGRKEASIENVLVPWSTYEFKVIAGNE--LGY 868
Y++ R + TW + T L + + G
Sbjct: 69 YELKYRNIGSETWKTII-----------TKNLHYKDGFDLNKGIEAXIHTLLPWQCTNGS 117
Query: 869 GEPSSPSPQYNTPADKPYQ--APSRIGGGGGKIGDLSISWEPLPREKQNAPNIYYKIFWR 926
SS + + + + L SW+P Y +W
Sbjct: 118 EVQSSWAETTYWISPQGIPETXVQDMDCVYYNWQYLLCSWKP--GIGVLLDTNYNLFYWY 175
Query: 927 KKNDTEFQ-SETLKEYGNVGIAVVRIPSEFYYTEYEVKVQAINDVGPGPESE 977
+ D Q + +K G Y ++ + V ++ P S
Sbjct: 176 EGLDHALQCVDYIKADGQNIGCRFPYLEASDYKDFYICVNGSSENKPIRSSY 227
>3f8u_B Tapasin; endoplasmic reticulum, glycoprotein, immunoglobulin
domain, microsome, protein disulfide isomerase,
thioredoxin-like FO like domain; HET: NAG; 2.60A {Homo
sapiens}
Length = 401
Score = 53.9 bits (128), Expect = 1e-07
Identities = 15/128 (11%), Positives = 36/128 (28%), Gaps = 14/128 (10%)
Query: 453 LTIPNVKVEDQGEYICRASNDRSALESSVTISIQAEPNFTI--PLTDKHMDNQADLTWTC 510
+P V+ +G Y+ + ++ +++ P ++ + +A C
Sbjct: 256 FWLPRVQPFQEGTYLATIHLPYLQGQVTLELAVYKPPKVSLMPATLARAAPGEAPPELLC 315
Query: 511 EAFG---VPDVTYSWFRNGELLNSETLPLEDQDRYFIQDN---------VLTIRYLNPER 558
+ W G + ++ + L + E+
Sbjct: 316 LVSHFYPSGGLEVEWELRGGPGGRSQKAEGQRWLSALRHHSDGSVSLSGHLQPPPVTTEQ 375
Query: 559 DPAMYQCR 566
A Y CR
Sbjct: 376 HGARYACR 383
Score = 31.1 bits (69), Expect = 1.9
Identities = 30/180 (16%), Positives = 48/180 (26%), Gaps = 35/180 (19%)
Query: 325 GVNYYWARDYFPNFVEEDKRVFVSYDGALYFSALEQIDAGNYSCNVQSKVSDTGRNGPFF 384
F + +++ + +G + ++ G Y +
Sbjct: 228 MPAAQEGAVAFAAWDDDEPWGPWTGNGTFWLPRVQPFQEGTYLATIHLPYLQGQVT---L 284
Query: 385 PLKVF--PHSNFQQLKFPNNFPKTFPEAPKAGDKVRLECVAFG-YPVPSYN--WTRRGSP 439
L V+ P + P T A L C+ YP W RG P
Sbjct: 285 ELAVYKPPK--------VSLMPATLARAAPGEAPPELLCLVSHFYPSGGLEVEWELRGGP 336
Query: 440 LPRNAYFENFNRI----------------LTIPNVKVEDQGE-YICRASNDRSALESSVT 482
R+ E + L P V E G Y CR + +L +S
Sbjct: 337 GGRSQKAEGQRWLSALRHHSDGSVSLSGHLQPPPVTTEQHGARYACRIHH--PSLPASGR 394
>3tes_A Tencon; fibronectin type III domain, FN3, consensus design, de
novo; 2.50A {Synthetic}
Length = 98
Score = 49.4 bits (118), Expect = 2e-07
Identities = 15/94 (15%), Positives = 25/94 (26%), Gaps = 14/94 (14%)
Query: 781 PGGVQVVEVHKTSATIQWTDGATNGRPITHYKI-IARTNWNSTWFNVSEHVIGKEVDRYT 839
P + V EV + S + WT A + + I + + Y
Sbjct: 5 PKNLVVSEVTEDSLRLSWT--APDA-AFDSFMIQYQESEKVGEA---INLTVPGSERSYD 58
Query: 840 GRKEASIENVLVPWSTYEFKVIAGNELGYGEPSS 873
+ L P + Y + P S
Sbjct: 59 ------LTG-LKPGTEYTVSIYGVKGGHRSNPLS 85
Score = 30.5 bits (69), Expect = 0.63
Identities = 12/79 (15%), Positives = 24/79 (30%), Gaps = 12/79 (15%)
Query: 902 LSISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETLKEYGNVGIAVVR--IPSEFYYTE 959
L +SW +A + I +++ ++ L G+ + P TE
Sbjct: 18 LRLSWTA-----PDAAFDSFMIQYQESEKVG-EAINLTVPGSERSYDLTGLKP----GTE 67
Query: 960 YEVKVQAINDVGPGPESEV 978
Y V + +
Sbjct: 68 YTVSIYGVKGGHRSNPLSA 86
>3s98_A Interferon alpha/beta receptor 1; human, type I interferons,
receptor chain, ifnar1, fibronect III, type I interferon
receptor chain; HET: NAG; 1.90A {Homo sapiens}
Length = 306
Score = 53.0 bits (126), Expect = 2e-07
Identities = 29/242 (11%), Positives = 64/242 (26%), Gaps = 18/242 (7%)
Query: 744 ITNASFADAGEYECVVKSTVGKIS----TKTTVIVEGPPGLPGGVQVVEVHKTSATIQWT 799
++ E + +++ S + P V + E + I +
Sbjct: 63 FSSLKLNVYEEIKLRIRAEKENTSSWYEVDSFTPFRKAQIGPPEVHL-EAEDKAIVIHIS 121
Query: 800 DGATNGRPITHYKIIARTNWNSTWFNVSEHVIG-KEVDRYTGRKEASIENVLVPWSTYEF 858
P T ++ + S +++ +R L P +TY
Sbjct: 122 -------PGTKDSVMWALDGLSFTYSLVIWKNSSGVEERIENIYSRHKIYKLSPETTYCL 174
Query: 859 KVIAGNELGYGEPSSPSPQYNTPADKPYQAPSRIGGGGGKIGDLSISWEPLPREKQNAPN 918
KV A + + P + + + W+
Sbjct: 175 KVKAALLTSWKIGVYSPVHCIKTTVENELPPPENIEVSVQNQNYVLKWDYTYA--NMTFQ 232
Query: 919 IYYKIFWRKKNDTEFQSETLKEYGNVGIAV---VRIPSEFYYTEYEVKVQAINDVGPGPE 975
+ + + K+N + + + V + F Y ++VQA +
Sbjct: 233 VQWLHAFLKRNPGNHLYKWKQIPDCENVKTTQCVFPQNVFQKGIYLLRVQASDGNNTSFW 292
Query: 976 SE 977
SE
Sbjct: 293 SE 294
>1axi_B HGHBP, growth hormone receptor; complex (hormone-receptor), complex
(hormone-receptor) compl; 2.10A {Homo sapiens} SCOP:
b.1.2.1 b.1.2.1 PDB: 1a22_B 1kf9_B 1hwg_B 1hwh_B 3hhr_B
2aew_A
Length = 236
Score = 52.1 bits (124), Expect = 2e-07
Identities = 25/200 (12%), Positives = 56/200 (28%), Gaps = 10/200 (5%)
Query: 770 TTVIVEGPPGLPGGVQVVEVHKTSATIQWTDGATNGRPITHYKIIARTNWNSTWFNVSEH 829
+ G P + + + + WTD +G + ++
Sbjct: 22 NPGLKTNSSGEPKFTKCRSPERETFSCHWTDEVHHGTKNEGPIQLFY--TRRNTQEWTQE 79
Query: 830 VIGKEVDRYTGRKEASI-ENVLVPWSTYEFKVIAGNELGYGEPSSPSPQYNTPADKPYQA 888
G + Y K+ + + S
Sbjct: 80 WKECPDYVSAGENSCYFNSSFTSIAIPYCIKLTSNGGTVDEKCFSVDEIVQPDPPIALNW 139
Query: 889 PSRIGGGGGKIGDLSISWEP--LPREKQNAPNIYYKIFWRKKNDTEFQSETLKEYGNVGI 946
G D+ + WE ++ + Y++ +++ N+T++ K +
Sbjct: 140 TLLNVSLTGIHADIQVRWEAPRNADIQKGWMVLEYELQYKEVNETKW-----KMMDPILT 194
Query: 947 AVVRIPSEFYYTEYEVKVQA 966
V + S EYEV+V++
Sbjct: 195 TSVPVYSLKVDKEYEVRVRS 214
Score = 29.0 bits (64), Expect = 6.6
Identities = 12/76 (15%), Positives = 24/76 (31%), Gaps = 5/76 (6%)
Query: 900 GDLSISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETLK--EYGNVGIAVVRIPSEF-- 955
S W ++F+ ++N E+ E + +Y + G S F
Sbjct: 44 ETFSCHWTD-EVHHGTKNEGPIQLFYTRRNTQEWTQEWKECPDYVSAGENSCYFNSSFTS 102
Query: 956 YYTEYEVKVQAINDVG 971
Y +K+ +
Sbjct: 103 IAIPYCIKLTSNGGTV 118
>1z9m_A GAPA225; nectin-like, IG-like domain, V domain, cell adhesion;
2.40A {Homo sapiens}
Length = 145
Score = 50.2 bits (119), Expect = 3e-07
Identities = 25/138 (18%), Positives = 41/138 (29%), Gaps = 19/138 (13%)
Query: 564 QCRAKNQLKTRYSSAQLRVLTLKPSFKKRPLESETYAGEGGNVTIFCNPEAAPKPKFVWK 623
Q L T + + L + ET GG V + C + W
Sbjct: 15 QHMDSPDLGTDDDDKAMADINLSQDDSQPWTSDET-VVAGGTVVLKCQVKDHEDSSLQWS 73
Query: 624 KDGNIIGSGGRRKIFENG------------NLLISPVSRDDSGIYSCTATNVHGMDESKG 671
G ++ + ++ IS V+ D G Y+C+ + +K
Sbjct: 74 NPAQQTLYFGEKRALRDNRIQLVTSTPHELSISISNVALADEGEYTCSI-FTMPVRTAKS 132
Query: 672 RLIVLHGPSYYEQLPPKI 689
+ VL P P I
Sbjct: 133 LVTVLGIPQ-----KPII 145
Score = 47.1 bits (111), Expect = 3e-06
Identities = 24/137 (17%), Positives = 40/137 (29%), Gaps = 15/137 (10%)
Query: 367 SCNVQSKVSDTGRNGPFFPLKVFPHSNFQQLKFPNNF-PKTFPEAPKAGDKVRLECVAFG 425
+K + P + ++ P T E AG V L+C
Sbjct: 5 KETAAAKFERQHMDSPDLGTDDDDKAMADINLSQDDSQPWTSDETVVAGGTVVLKCQVKD 64
Query: 426 YPVPSYNWTRRGSPL--PRNAYFENFNRI-----------LTIPNVKVEDQGEYICRASN 472
+ S W+ NRI ++I NV + D+GEY C
Sbjct: 65 HEDSSLQWSNPAQQTLYFGEKRALRDNRIQLVTSTPHELSISISNVALADEGEYTCSIFT 124
Query: 473 DRSALESSVTISIQAEP 489
+ +++ P
Sbjct: 125 M-PVRTAKSLVTVLGIP 140
Score = 45.9 bits (108), Expect = 8e-06
Identities = 25/130 (19%), Positives = 49/130 (37%), Gaps = 9/130 (6%)
Query: 658 CTATNVHGMDESKGRLIVLHGPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTH 717
+ ++ D+ K + + T+ A + L+C ++ D + W++
Sbjct: 17 MDSPDLGTDDDDKAMADINLSQDDSQPWTSDETVVAGGTVVLKC--QVKDHEDSSLQWSN 74
Query: 718 NGVRI-GNMDLNELETPNINIDGG-----LLEITNASFADAGEYECVVKSTVGKISTKTT 771
+ + L I + + I+N + AD GEY C + T+ + K+
Sbjct: 75 PAQQTLYFGEKRALRDNRIQLVTSTPHELSISISNVALADEGEYTCSI-FTMPVRTAKSL 133
Query: 772 VIVEGPPGLP 781
V V G P P
Sbjct: 134 VTVLGIPQKP 143
Score = 43.2 bits (101), Expect = 5e-05
Identities = 15/86 (17%), Positives = 27/86 (31%), Gaps = 10/86 (11%)
Query: 210 NDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLSGG-----NLIINDPR 264
+ L C + + S +W Q L L D R L ++ I++
Sbjct: 54 GTVVLKCQVKDHEDSSLQWSNPA--QQTLYFGEKRALRDNRIQLVTSTPHELSISISNV- 110
Query: 265 QVEDRGSYHCKASNKFGSIISESVQL 290
+ D G Y C + + +
Sbjct: 111 ALADEGEYTCSIFTM--PVRTAKSLV 134
>2cum_A Tenascin-X; hexabrachion-like, fibronectin type III domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
b.1.2.1
Length = 105
Score = 49.0 bits (117), Expect = 3e-07
Identities = 17/95 (17%), Positives = 32/95 (33%), Gaps = 14/95 (14%)
Query: 781 PGGVQVVEVHKTSATIQWTDGATNGRPITHYKIIARTNWNSTWFNVSEHVIGKEVDRYTG 840
P ++ EV +A + WT+ Y + T T E ++ + +
Sbjct: 11 PRDLEAKEVTPRTALLTWTEPPV---RPAGYLLSFHTPGGQTQ----EILLPGGITSHQ- 62
Query: 841 RKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPS 875
+ L P ++Y ++ A P S S
Sbjct: 63 -----LLG-LFPSTSYNARLQAMWGQSLLPPVSTS 91
Score = 28.6 bits (64), Expect = 3.6
Identities = 10/79 (12%), Positives = 22/79 (27%), Gaps = 14/79 (17%)
Query: 902 LSISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETLKEYGNVGIAVVR--IPSEFYYTE 959
++W P Y + + ++ + G + + P T
Sbjct: 24 ALLTWTE-PP----VRPAGYLLSFHTPGGQ---TQEILLPGGITSHQLLGLFP----STS 71
Query: 960 YEVKVQAINDVGPGPESEV 978
Y ++QA+ P
Sbjct: 72 YNARLQAMWGQSLLPPVST 90
>2rcj_C Light chain; immunoglobulin M, polymeric antibodies, immunology,
X-RAY solution scattering, constrained modelling, immune
system; NMR {Homo sapiens}
Length = 523
Score = 53.3 bits (128), Expect = 3e-07
Identities = 81/465 (17%), Positives = 141/465 (30%), Gaps = 69/465 (14%)
Query: 356 SALEQIDAGNYSCNVQSKVSDTGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPEAP---- 411
S LE D +Y C + ++ G + V P P
Sbjct: 75 SGLEAEDESDYYCASWNSSDNSYVFGTGTKVTVLGQPKAN--------PTVTLFPPSSEE 126
Query: 412 KAGDKVRLECVAFGY-PVP-SYNWTRRGSPLPRNAYFENFNRI------------LTIPN 457
+K L C+ + P + W GSP+ A E L++
Sbjct: 127 LQANKATLVCLISDFYPGAVTVAWKADGSPV--KAGVETTKPSKQSNNKYAASSYLSLTP 184
Query: 458 VKVEDQGEYICRASNDRSALESSVTISIQAEPN-----FTIPLTDKHMD-NQADLTWTCE 511
+ + Y C+ +++ S +E +V + + F + + K A L +
Sbjct: 185 EQWKSHRSYSCQVTHEGSTVEKTVAPTECSASTKGPSVFPLAPSSKSTSGGTAALGCLVK 244
Query: 512 AFGVPDVTYSWFRNGELLNSETLPLEDQ-DRYFIQDNVLTIRYLNPERD--PAMYQCRAK 568
+ VT SW T P Q + +V+T+ P Y C
Sbjct: 245 DYFPQPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTV----PSSSLGTQTYICNVN 300
Query: 569 NQLKTRYSSAQLRVLTLKPSFKKRPLESETYAGEGGNVTIFCN----PEAAPKPKFVWKK 624
++ ++ L+L F P +T + C P+ KF W
Sbjct: 301 HKPSNTKVDKRVEPLSLPSVFLFPPKPKDTLM-ISRTPEVTCVVVDVSHEDPQVKFNWYV 359
Query: 625 DGNIIGSGGRRKIFENGN--------LLISPVSRDDSGIYSCTATNVHGMDESKGRLIVL 676
DG + + + + N L + + D Y C +N + +
Sbjct: 360 DGVQVHNAKTKPREQQYNSTYRVVSVLTVLHQNWLDGKEYKCKVSNKALPAPIEKTISKA 419
Query: 677 HG----PSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELET 732
G P Y LPP + L C D+A W NG N +
Sbjct: 420 KGQPREPQVY-TLPPSREEMTKNQVSLTCLVKGFYPSDIAVEWESNGQPENNY---KTTP 475
Query: 733 PNINIDG-----GLLEITNASFADAGEYECVV--KSTVGKISTKT 770
P ++ DG L + + + + C V ++ + K+
Sbjct: 476 PVLDSDGSFFLYSKLTVDKSRWQQGNVFSCSVMHEALHNHYTQKS 520
Score = 50.6 bits (121), Expect = 2e-06
Identities = 66/369 (17%), Positives = 125/369 (33%), Gaps = 54/369 (14%)
Query: 453 LTIPNVKVEDQGEYICRASNDRSALE-----SSVTIS--IQAEPNFTIPLTDKHMDNQAD 505
L I ++ ED+ +Y C + N + VT+ +A P T+
Sbjct: 72 LAISGLEAEDESDYYCASWNSSDNSYVFGTGTKVTVLGQPKANPTVTLFPPSSEELQANK 131
Query: 506 LTWTCEAFGV-P-DVTYSWFRNGELLNS---ETLPLEDQDRYFIQDNVLTIRYLNPERDP 560
T C P VT +W +G + + T P + + + + L++ +
Sbjct: 132 ATLVCLISDFYPGAVTVAWKADGSPVKAGVETTKPSKQSNNKYAASSYLSLTPEQWK-SH 190
Query: 561 AMYQCRAKNQLKTRYSSAQLRVLTLKPSFKKR-----PLESETYAGEGGNVTIFC----- 610
Y C+ ++ S+ + V + S + PL + + GG + C
Sbjct: 191 RSYSCQVTHE----GSTVEKTVAPTECSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDY 246
Query: 611 NPEAAPKPKFVWKKDGNIIGSGGR--RKIFENGNL------LISPVSRDDSGIYSCTATN 662
P+ W + + SG + ++ L + P S + Y C +
Sbjct: 247 FPQPV---TVSW--NSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNH 301
Query: 663 VHGMDESKGRLIVLHGPSYYEQLPPKI-TIAAHRNLQLRCSAH--TEELLDVAYIWTHNG 719
+ R+ L PS + P T+ R ++ C + E V + W +G
Sbjct: 302 KPSNTKVDKRVEPLSLPSVFLFPPKPKDTLMISRTPEVTCVVVDVSHEDPQVKFNWYVDG 361
Query: 720 VRIGNMDLNELETPNINIDGGL------LEITNASFADAGEYECVVKSTVGKISTKTTV- 772
V++ N P L + + ++ D EY+C V + + T+
Sbjct: 362 VQV----HNAKTKPREQQYNSTYRVVSVLTVLHQNWLDGKEYKCKVSNKALPAPIEKTIS 417
Query: 773 IVEGPPGLP 781
+G P P
Sbjct: 418 KAKGQPREP 426
>1byf_A TC14, protein (polyandrocarpa lectin); C-type lectin,
galactose-specific, sugar binding protein; 2.00A
{Polyandrocarpa misakiensis} SCOP: d.169.1.1 PDB:
1tlg_A*
Length = 125
Score = 49.3 bits (118), Expect = 3e-07
Identities = 15/78 (19%), Positives = 21/78 (26%), Gaps = 4/78 (5%)
Query: 38 DSCYRFVKSPLKTRNDAKLNCKSLDSDLANVNDADEHGFIMYQLFWQDPQRRKWYFGGT- 96
D F DA C+S L + D F + W G
Sbjct: 2 DYEILFSDET-MNYADAGTYCQSRGMALVSSAMRDSTMVKAILAFTEVKGHDYW-VGADN 59
Query: 97 -QQSPNLWVNEDGTNLNE 113
Q ++ DG +L
Sbjct: 60 LQDGAYNFLWNDGVSLPT 77
>3qwq_B Adnectin; cell surface receptor, tyrosine kinase, glycoprotein,
adnect antitumor, drug, engineered binding protein; HET:
NAG BMA MAN FUC; 2.75A {Homo sapiens} PDB: 3qwr_D*
Length = 114
Score = 48.8 bits (116), Expect = 3e-07
Identities = 27/119 (22%), Positives = 38/119 (31%), Gaps = 19/119 (15%)
Query: 776 GPPGLPGGVQVVEVHKTSATIQWTDGATNGRPITHYKIIARTNWNSTWFNVSEHVIGKEV 835
G +P ++VV TS I W + G +Y+I ++ V E + V
Sbjct: 2 GVSDVPRDLEVVAATPTSLLISWD--SGRG-SYQYYRITYGETGGNSP--VQEFTVPGPV 56
Query: 836 DRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPSPQ-------YNTPADKPYQ 887
T I L P Y V A + + Y T DKP Q
Sbjct: 57 HTAT------ISG-LKPGVDYTITVYAVTDHKPHADGPHTYHESPISINYRTEIDKPSQ 108
Score = 31.0 bits (70), Expect = 0.48
Identities = 17/78 (21%), Positives = 26/78 (33%), Gaps = 12/78 (15%)
Query: 902 LSISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETLKEYGNVGIAVVR--IPSEFYYTE 959
L ISW+ YY+I + + E G V A + P +
Sbjct: 20 LLISWDS-----GRGSYQYYRITYGETGGNSPVQE-FTVPGPVHTATISGLKP----GVD 69
Query: 960 YEVKVQAINDVGPGPESE 977
Y + V A+ D P +
Sbjct: 70 YTITVYAVTDHKPHADGP 87
>1nkr_A P58-CL42 KIR; inhibitory receptor, natural killer cells,
immunological receptors, immunoglobulin fold; 1.70A
{Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1m4k_A 1efx_D
2dli_A 2dl2_A 3h8n_A
Length = 201
Score = 50.3 bits (120), Expect = 6e-07
Identities = 33/168 (19%), Positives = 55/168 (32%), Gaps = 22/168 (13%)
Query: 602 EGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENG----NLLISPVSRDDSGIYS 657
V + C + F+ ++G + +G N IS +++D +G Y
Sbjct: 21 SEETVILQCWSDV-MFEHFLLHREGMFNDTLRLIGEHHDGVSKANFSISRMTQDLAGTYR 79
Query: 658 CTATNVHGMDE----SKGRLIVLHGPSYYEQL--PPKITIAAHRNLQLRCSAHTEELLDV 711
C + H + S IV+ G L P T+ A N+ L CS+ +
Sbjct: 80 CYGSVTHSPYQVSAPSDPLDIVIIGLYEKPSLSAQPGPTVLAGENVTLSCSSRSS---YD 136
Query: 712 AYIWTHNGVRIGNMDLNELETPNINIDGGL--LEITNASFADAGEYEC 757
Y + G + +E P G + G Y C
Sbjct: 137 MYHLSREG------EAHERRLPAGPKVNGTFQADFPLGPATHGGTYRC 178
Score = 39.9 bits (93), Expect = 0.002
Identities = 29/132 (21%), Positives = 37/132 (28%), Gaps = 10/132 (7%)
Query: 353 LYFSALEQIDAGNYSCNVQSKVSDTGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPEA-P 411
S + Q AG Y C S + P PL + + P
Sbjct: 65 FSISRMTQDLAGTYRCYGSVTHSPYQVSAPSDPLDIV-----IIGLYEKPSLSAQPGPTV 119
Query: 412 KAGDKVRLECVAFGYPVPSYNWTRRGSPLPR---NAYFENFNRILTIPNVKVEDQGEYIC 468
AG+ V L C + Y+ +R G R N P G Y C
Sbjct: 120 LAGENVTLSCSS-RSSYDMYHLSREGEAHERRLPAGPKVNGTFQADFPLGPATHGGTYRC 178
Query: 469 RASNDRSALESS 480
S S E S
Sbjct: 179 FGSFHDSPYEWS 190
Score = 38.7 bits (90), Expect = 0.004
Identities = 27/166 (16%), Positives = 46/166 (27%), Gaps = 21/166 (12%)
Query: 414 GDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYFENFNR-----ILTIPNVKVEDQGEYIC 468
+ V L+C + + R G + +I + + G Y C
Sbjct: 22 EETVILQCWSD-VMFEHFLLHREGMFNDTLRLIGEHHDGVSKANFSISRMTQDLAGTYRC 80
Query: 469 RASNDRSALESS-----VTISIQAE---PNFTIPLTDKHMDNQADLTWTCEAFGVPDVTY 520
S S + S + I I P+ + + ++T +C + Y
Sbjct: 81 YGSVTHSPYQVSAPSDPLDIVIIGLYEKPSLSAQ-PGPTVLAGENVTLSCSS-RSSYDMY 138
Query: 521 SWFRNGELLNSETLPLEDQDRYFIQDNVLTIRYLNPERDPAMYQCR 566
R GE + F D L P Y+C
Sbjct: 139 HLSREGEAHERRLPAGPKVNGTFQADFPLG-----PATHGGTYRCF 179
Score = 32.6 bits (74), Expect = 0.37
Identities = 26/165 (15%), Positives = 46/165 (27%), Gaps = 19/165 (11%)
Query: 212 ITLSCYAGGYPNPSYEWFKED--YVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVEDR 269
+ L C+ + +E RL+ D +S F++S +
Sbjct: 25 VILQCW-SDVMFEHFLLHREGMFNDTLRLIGEHHDGVSKANFSIS--------RMTQDLA 75
Query: 270 GSYHCKASNKFG----SIISESVQL-AFGFIGEFNLKRAPEIGNQNWGKAMF-CDPPTNY 323
G+Y C S S S+ + + G + +L P C
Sbjct: 76 GTYRCYGSVTHSPYQVSAPSDPLDIVIIGLYEKPSLSAQPGPTVLAGENVTLSCSSR--S 133
Query: 324 PGVNYYWARDYFPNFVEEDKRVFVSYDGALYFSALEQIDAGNYSC 368
Y+ +R+ + V+ F G Y C
Sbjct: 134 SYDMYHLSREGEAHERRLPAGPKVNGTFQADFPLGPATHGGTYRC 178
>3se4_A Interferon alpha/beta receptor 1; type I interferon signaling
complex, extracellular space, IM system receptor; HET:
NAG; 3.50A {Homo sapiens} PDB: 3se3_A*
Length = 414
Score = 51.2 bits (121), Expect = 1e-06
Identities = 28/235 (11%), Positives = 60/235 (25%), Gaps = 22/235 (9%)
Query: 753 GEYECVVKSTVGKIS----TKTTVIVEGPPGLPGGVQVVEVHKTSATIQWTDGATNGRPI 808
E + +++ S + P V + E + I + G +
Sbjct: 76 EEIKLRIRAEKENTSSWYEVDSFTPFRKAQIGPPEVHL-EAEDKAIVIHISPGTKDSVMW 134
Query: 809 THYKI-----IARTNWNSTWFNVSEHVIGKEVDRYTGRKEASIENVLVPWSTYEFKVIAG 863
+ + +S E++ + L P +TY KV A
Sbjct: 135 ALDGLSFTYSLVIWKNSSGVEERIENIYSRHKIYK-----------LSPETTYCLKVKAA 183
Query: 864 NELGYGEPSSPSPQYNTPADKPYQAPSRIGGGGGKIGDLSISWEPLPREKQNAPNIYYKI 923
+ + P + + + W+ +
Sbjct: 184 LLTSWKIGVYSPVHCIKTTVENELPPPENIEVSVQNQNYVLKWDYTYANMTFQVQWLHAF 243
Query: 924 FWRKKNDTEFQSETLKEYGNVGIAVVRIPSEF-YYTEYEVKVQAINDVGPGPESE 977
R + ++ + + + NV P Y ++VQA + SE
Sbjct: 244 LKRNPGNHLYKWKQIPDCENVKTTQCVFPQNVFQKGIYLLRVQASDGNNTSFWSE 298
Score = 49.2 bits (116), Expect = 4e-06
Identities = 36/315 (11%), Positives = 75/315 (23%), Gaps = 42/315 (13%)
Query: 686 PPKITIAAH-RNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDL--NELETPNINIDGGLL 742
PP++ + A + + + S T++ + +W +G+ + I+
Sbjct: 108 PPEVHLEAEDKAIVIHISPGTKD----SVMWALDGLSFTYSLVIWKNSSGVEERIENIYS 163
Query: 743 EITNASFADAGEYECVVKSTV-------GKISTKTTVIVEGPPGLPGGVQVVEVHKTSAT 795
+ Y VK+ + P V V +
Sbjct: 164 RHKIYKLSPETTYCLKVKAALLTSWKIGVYSPVHCIKTTVENELPPPENIEVSVQNQNYV 223
Query: 796 IQWTDGATNGRPITHYKIIARTNWNSTWFNVSEHVIGKEVDRYTGRKEASIENVLVPWST 855
++W N + + +
Sbjct: 224 LKWDYTYANMTFQVQWLHAFLKRNPGNH---LYKWKQIPDCENVKTTQCVFPQNVFQKGI 280
Query: 856 YEFKVIAGNELGYGEPS---SPSPQYNTPADKPYQAPSRIGGGGGKIGDLSISWEPLPRE 912
Y +V A + S + P + I P++
Sbjct: 281 YLLRVQASDGNNTSFWSEEIKFDTEIQAFLLPPVFNIRSLSDS------FHIYIGA-PKQ 333
Query: 913 KQNAP-----NIYYKIFWRKKNDTEFQSETLKEYGNVGIAVVRIPSEFYYTEYEVKVQAI 967
N P + Y+I + + + K+ V +P+ T Y VK +A
Sbjct: 334 SGNTPVIQDYPLIYEIIFWENTSNAERKIIEKKTD------VTVPNLKPLTVYCVKARAH 387
Query: 968 NDVG----PGPESEV 978
S+
Sbjct: 388 TMDEKLNKSSVFSDA 402
Score = 37.7 bits (86), Expect = 0.019
Identities = 23/203 (11%), Positives = 50/203 (24%), Gaps = 20/203 (9%)
Query: 776 GPPGL--PGGVQVVEVHKTSATIQWTDGATNGRPITHYKIIARTNWNSTWFNVSEHVIGK 833
G L P V+V + + ++W + +T + + W +S
Sbjct: 4 GSKNLKSPQKVEVDII-DDNFILRWNRSDESVGNVT-FSFDYQKTGMDNWIKLSG----- 56
Query: 834 EVDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPSPQYNTPADKPYQAPSR-- 891
T K L + + ++ A E + P
Sbjct: 57 -CQNITSTKCNFSSLKLNVYEEIKLRIRA--EKENTSSWYEVDSFTPFRKAQIGPPEVHL 113
Query: 892 IGGGGGKIGDLSISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETLKEYGNVGIAVVRI 951
+ +S + + + Y + K + + + +
Sbjct: 114 EAEDKAIVIHISPGTKDSVMWALDGLSFTYSLVIWKNSSGVEERIENIYSRHKIYKLS-- 171
Query: 952 PSEFYYTEYEVKVQAINDVGPGP 974
T Y +KV+A
Sbjct: 172 ----PETTYCLKVKAALLTSWKI 190
Score = 32.3 bits (72), Expect = 0.90
Identities = 24/146 (16%), Positives = 40/146 (27%), Gaps = 25/146 (17%)
Query: 753 GEYECVVKSTVG----KISTKTTVIVEGPPGLPGGVQVVEVHKTSATIQWTDGATNGRPI 808
G Y V+++ G S + E L V + S I +G
Sbjct: 279 GIYLLRVQASDGNNTSFWSEEIKFDTEIQAFLLPPVFNIRSLSDSFHIYIGAPKQSGNTP 338
Query: 809 T------HYKIIARTNWNSTWFNVSEHVIGKEVDRYTGRKEASIENVLVPWSTYEFKVIA 862
Y+II N ++ + + + ++ N L P + Y K A
Sbjct: 339 VIQDYPLIYEIIFWENTSNAERKII-----------EKKTDVTVPN-LKPLTVYCVKARA 386
Query: 863 GNELG-YGEPSSPSPQ--YNTPADKP 885
+ S S T
Sbjct: 387 HTMDEKLNKSSVFSDAVCEKTKPGNT 412
>2msb_A Mannose-binding protein-A; lectin; HET: BMA MAN; 1.70A {Rattus
rattus} SCOP: d.169.1.1 PDB: 1msb_A 1ytt_A*
Length = 115
Score = 47.6 bits (114), Expect = 1e-06
Identities = 12/76 (15%), Positives = 25/76 (32%), Gaps = 8/76 (10%)
Query: 38 DSCYRFVKSPLKTRNDAKLNCKSLDSDLANVNDADEHGFIMYQLFWQDPQRRKWYFGGT- 96
+ + K C L +A +A+E+ I Q+ + + G T
Sbjct: 3 KKFFVTNHER-MPFSKVKALCSELRGTVAIPRNAEENKAI------QEVAKTSAFLGITD 55
Query: 97 QQSPNLWVNEDGTNLN 112
+ + ++ G L
Sbjct: 56 EVTEGQFMYVTGGRLT 71
>4doh_B Interleukin-20 receptor subunit beta; IL10 family cytokine receptor
complex, alpha helical cytokin beta sandwhich receptor
fold, signaling complex; HET: NAG; 2.80A {Homo sapiens}
Length = 206
Score = 49.7 bits (118), Expect = 1e-06
Identities = 31/201 (15%), Positives = 60/201 (29%), Gaps = 20/201 (9%)
Query: 781 PGGVQVVEVHKTSATIQWTDGATNGRPITHYKIIARTNWNSTWFNVSEHVIGKEVDRYTG 840
P + V+ + + W+ G +Y + + + S + S I T
Sbjct: 10 PQQLSVLSTN-MKHLLMWSPVIAPG-ETVYYSVEYQGEYESLY--TSHIWIPSSWCSLTE 65
Query: 841 RKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPSPQYNTPADKPYQAPSRIGGGGGKIG 900
E + + + Y +V A S +N + + I G +
Sbjct: 66 GPECDVTDDITATVPYNLRVRATLGSQTSAWSILKHPFNRQSTILTRPGMEITKDGFHL- 124
Query: 901 DLSISWEPLPREKQNAPNIYYKI-FWRKKNDTEFQSETLKEYGNVGIAVVRIPSEFYYTE 959
I E L P + + +WR++ E + ++ G V + +
Sbjct: 125 --VIELEDLG------PQFEFLVAYWRREPGAEEHVKMVRSGGIP----VHLETMEPGAA 172
Query: 960 YEVKVQAINDV--GPGPESEV 978
Y VK Q S+
Sbjct: 173 YCVKAQTFVKAIGRYSAFSQT 193
>2w1n_A O-GLCNACASE NAGJ; hexosaminidase, glycoside hydrolase, fibronectin
type-III, beta-N-acetylglucosaminidase, cohesin,
hydrolase; 1.80A {Clostridium perfringens}
Length = 238
Score = 49.9 bits (118), Expect = 1e-06
Identities = 25/171 (14%), Positives = 46/171 (26%), Gaps = 29/171 (16%)
Query: 711 VAYIWTHNGVRIGNMDLNELE-TPNINIDGGLLEITNASFADAGEYECVVKSTVGKISTK 769
V L ++ +G L +TN+S D + T ++
Sbjct: 83 VLVSSLTGEPLPAKEVLAKVVLRAEAKTEGSNLSVTNSSVGDGEGLVHEIAGTEKTVNII 142
Query: 770 TTVIVEGPPGLPGGVQVVEVHKTSATIQWTDGATNGRPITHYKI------IARTNWNSTW 823
E + E++K + T+ WT+ T + Y + +A + T
Sbjct: 143 EGTSPEIVVNPVRDFKASEINKKNVTVTWTEPETTE-GLEGYILYKDGKKVAEIGKDETS 201
Query: 824 FNVSEHVIGKEVDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSP 874
+ L + Y FK+ A G
Sbjct: 202 YTF------------KK---------LNRHTIYNFKIAAKYSNGEVSSKES 231
Score = 28.7 bits (63), Expect = 9.2
Identities = 23/226 (10%), Positives = 55/226 (24%), Gaps = 27/226 (11%)
Query: 761 STVGKISTKTTVIVEGPPGLPGGVQVVEVHKTSATIQWTDGATNGRPITHYKIIA--RTN 818
+ + V ++ ++ ++ + ++ + K I +
Sbjct: 23 EVQVGENIEVGVGIDELVNAEAFAYDFTLNYDENAFEYVEAISDDGVFVNAKKIEDGKVR 82
Query: 819 WNSTWFNVSEHVIGKEVDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPSPQY 878
+ + + + R EA E + + G
Sbjct: 83 VLVSSLTGEPLPAKEVLAKVVLRAEAKTEGSNLSVTNSSVGDGEGLVHEIAGTEKTVNII 142
Query: 879 NTPADKPYQAPSRIGGGGGKIGD-LSISWEPLPREKQNAPNIYY------KIFWRKKNDT 931
+ + P R ++++W E Y K+ K++T
Sbjct: 143 EGTSPEIVVNPVRDFKASEINKKNVTVTWTEP--ETTEGLEGYILYKDGKKVAEIGKDET 200
Query: 932 EFQSETLKEYGNVGIAVVRIPSEFYYTEYEVKVQAINDVGPGPESE 977
+ + L + T Y K+ A G E
Sbjct: 201 SYTFKKLNRH----------------TIYNFKIAAKYSNGEVSSKE 230
>3g9v_A Interleukin 22 receptor, alpha 2; cytokine, cytokine receptor,
receptor, glycoprotein, polymorphism, secreted,
cytokine/cytokine receptor complex; 2.76A {Homo sapiens}
Length = 211
Score = 49.4 bits (117), Expect = 1e-06
Identities = 30/220 (13%), Positives = 59/220 (26%), Gaps = 35/220 (15%)
Query: 775 EGPPGLPGGVQVVEVHKTSATIQWTDGATNGRPITHYKIIARTNWNSTWFNVSEHVIGKE 834
P VQ + +QW G + Y + + W N +
Sbjct: 5 THESLKPQRVQFQSRN-FHNILQWQPGRALTGNSSVYFVQYKIYGQRQWKNKEDCW---- 59
Query: 835 VDRYTGRKEASIENV-LVPWSTYEFKVIA---GNELGYGEPSSPSPQYNTPADKPYQAPS 890
T + + Y +V A G+ + +P + T D P +
Sbjct: 60 ---GTQELSCDLTSETSDIQEPYYGRVRAASAGSYSEWSMTPRFTPWWETKIDPPVMNIT 116
Query: 891 RIGGGGGKIGDLSISWEPLPREKQNAP----------NIYYKIFWRKKNDTEFQSETLKE 940
++ G L + + + Y++F N E + + +
Sbjct: 117 QVN------GSLLVILHAPNLPYRYQKEKNVSIEDYYELLYRVFII-NNSLEKEQKVYEG 169
Query: 941 YGNVGIAVVRIPSEFYYTEYEVKVQAINDV--GPGPESEV 978
V I + ++ Y V + + SE
Sbjct: 170 AHR----AVEIEALTPHSSYCVVAEIYQPMLDRRSQRSEE 205
>3v6o_A Leptin receptor; receptor-antibody complex, cytokine receptor,
antibody FAB F immunoglobulin fold; HET: NAG; 1.95A
{Homo sapiens}
Length = 206
Score = 49.3 bits (117), Expect = 1e-06
Identities = 35/191 (18%), Positives = 63/191 (32%), Gaps = 14/191 (7%)
Query: 792 TSATIQWTDGATNGRPITHYKIIARTNWNSTWFNVSEHVIG----KEVDRYTGRKEASIE 847
T T +W+ + ++ R + +S + + + K+ + I
Sbjct: 16 TKMTCRWSTSTIQSLAESTLQL--RYHRSSLYCSDIPSIHPISEPKDCYLQSDGFYECIF 73
Query: 848 NVLVPWSTYEFKVIAGNELGYGEPSSPSPQYNTPADKPYQAPSRI-GGGGGKIGDLSISW 906
+ S Y + + LG SP + PS + IG L ISW
Sbjct: 74 QPIFLLSGYTMWIRINHSLG--SLDSPPTCVLPDSVVKPLPPSSVKAEITINIGLLKISW 131
Query: 907 EPLPREKQNAPNIYYKIFWRKKNDTEFQSETLKEYGNVGIAVVRIPSEFYYTEYEVKVQA 966
E + N + ++I + E Q + + Y +V +P Y V+V+
Sbjct: 132 EKPVFPENN---LQFQIRYGLSGK-EVQWKMYEVYDAKSKSVS-LPVPDLCAVYAVQVRC 186
Query: 967 INDVGPGPESE 977
G G S
Sbjct: 187 KRLDGLGYWSN 197
Score = 30.8 bits (69), Expect = 1.6
Identities = 17/123 (13%), Positives = 36/123 (29%), Gaps = 13/123 (10%)
Query: 758 VVKSTVGKISTKTTVIVEG---PPGLPGGVQVVEVHKTSA-TIQWTDGATNGRPITHYKI 813
+ ++G + + T ++ P P V+ I W + ++I
Sbjct: 87 RINHSLGSLDSPPTCVLPDSVVKPLPPSSVKAEITINIGLLKISWEKPVFPENNLQ-FQI 145
Query: 814 IARTNWNSTWFNVSEHVIGKEVDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSS 873
+ + + E V + + V + Y +V G G S+
Sbjct: 146 RYGLSGKEVQWKMYE-VYDAKSKSVSLP-------VPDLCAVYAVQVRCKRLDGLGYWSN 197
Query: 874 PSP 876
S
Sbjct: 198 WSN 200
>1igy_B IGG1 intact antibody MAB61.1.3; intact immunoglobulin, V region, C
region, hinge region, immunoglobulin; HET: NAG FUL NDG
BMA MAN GAL FUC; 3.20A {Mus musculus} SCOP: b.1.1.1
b.1.1.2 b.1.1.2 b.1.1.2
Length = 434
Score = 50.7 bits (121), Expect = 1e-06
Identities = 67/402 (16%), Positives = 112/402 (27%), Gaps = 77/402 (19%)
Query: 212 ITLSCYAGGYPNPSY--EWFKEDYVQDRLVANLIDPLSDK---------RFTLSGGN--- 257
+ +SC A GY +Y W K+ Q I+P S + TL+
Sbjct: 17 VKMSCKASGYTFTTYTIHWIKQRPGQGLEWIGYINPSSVYTNYNQRFKDKATLTRDRSSN 76
Query: 258 ---LIINDPRQVEDRGSYHCKASNKF---GSIISESVQLAFGFIGEFNLKRAPEIGNQNW 311
+ ++ +D Y+C + G + +V A P +
Sbjct: 77 TANIHLSSLT-SDDSAVYYCVREGEVPYWGQGTTVTVSSAK--------TTPPSVYPLAP 127
Query: 312 GKAMFCDPPTNYPGVNYYWARDYFPNFVE---------EDKRVF-VSYDGALYF--SAL- 358
G TN + YFP V F LY S++
Sbjct: 128 G----SAAQTNSMVTLGCLVKGYFPEPVTVTWNSGSLSSGVHTFPAVLQSDLYTLSSSVT 183
Query: 359 ---EQIDAGNYSCNVQSKVSDTGRNGPFFPLKVFPHSNFQQL---KFPNNFPKTFPEAPK 412
+ +CNV S T + P + FP +
Sbjct: 184 VPSSPRPSETVTCNVAHPASSTKVDKKIVPRDCGCKPCICTVPEVSSVFIFPPKPKDTLL 243
Query: 413 AGDKVRLECVAFGYPVPSY----NWTRRGSPL---PRNAYFENFNR------ILTIPNVK 459
++ CV +W + E FN L I +
Sbjct: 244 ITVTPKVTCVVVDISKDDPEVQFSWFVDNVEVHTAQTQPREEQFNSTFRVVSALPIMHQD 303
Query: 460 VEDQGEYICRASNDRSA----LESSVTISIQAEPNFTI--PLTDKHMDNQADLTWTCEAF 513
+ E+ CR ++ S T P P ++ ++ L TC
Sbjct: 304 WLNGKEFKCRVNSAAFPAPIEKTISKTKGKPRAPQVYTIPPPKEQMAKDKVSL--TCMIT 361
Query: 514 GV--PDVTYSWFRNGELLNSE--TLPLEDQDRYFIQDNVLTI 551
D+T W +G+ + T P+ D D + + L +
Sbjct: 362 DFFPEDITVEWQSDGQAPENYKNTQPIMDTDGSYFVYSKLNV 403
Score = 41.4 bits (97), Expect = 0.001
Identities = 61/422 (14%), Positives = 115/422 (27%), Gaps = 81/422 (19%)
Query: 408 PEAPKAGDKVRLECVAFGYPVPSY--NWTRR--GSPLP----------RNAYFENF-NRI 452
E + G V++ C A GY +Y +W ++ G L Y + F ++
Sbjct: 8 AELARPGASVKMSCKASGYTFTTYTIHWIKQRPGQGLEWIGYINPSSVYTNYNQRFKDKA 67
Query: 453 ------------LTIPNVKVEDQGEYIC--RASNDRSALESSVTIS--IQAEPNFTIPLT 496
+ + ++ +D Y C ++VT+S P+
Sbjct: 68 TLTRDRSSNTANIHLSSLTSDDSAVYYCVREGEVPYWGQGTTVTVSSAKTTPPSVYPLAP 127
Query: 497 DKHMDNQADLTWTCEAFGV--PDVTYSWFRNGELLNSETLPLEDQDRYFIQDNVLTIRYL 554
+ +T C G VT +W T P Q + + +T+
Sbjct: 128 GSAAQTNSMVTLGCLVKGYFPEPVTVTWNSGSLSSGVHTFPAVLQSDLYTLSSSVTVP-- 185
Query: 555 NPERDPAMYQCRAKNQLKTRYSSAQLRVLTLKPSFKKRPLESETYAG------------- 601
+ R C + SS ++ + +P
Sbjct: 186 SSPRPSETVTCNVAHP----ASSTKVDKKIVPRDCGCKPCICTVPEVSSVFIFPPKPKDT 241
Query: 602 --EGGNVTIFC-----NPEAAPKPKFVWKKDGNIIGSGGRRKIFENGNLLISPVSR---- 650
+ C + + P+ +F W D + + + E N VS
Sbjct: 242 LLITVTPKVTCVVVDISKD-DPEVQFSWFVDNVEVHTAQTQPREEQFNSTFRVVSALPIM 300
Query: 651 ----DDSGIYSCTATNVHGMDESKGRLIVLHGPSYY---EQLPPKITIAAHRNLQLRCSA 703
+ + C + + + G +PP A + L C
Sbjct: 301 HQDWLNGKEFKCRVNSAAFPAPIEKTISKTKGKPRAPQVYTIPPPKEQMAKDKVSLTCMI 360
Query: 704 HTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGL------LEITNASFADAGEYEC 757
D+ W +G N T I G L + +++ + C
Sbjct: 361 TDFFPEDITVEWQSDGQAP----ENYKNTQPIMDTDGSYFVYSKLNVQKSNWEAGNTFTC 416
Query: 758 VV 759
V
Sbjct: 417 SV 418
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 51.4 bits (122), Expect = 2e-06
Identities = 81/548 (14%), Positives = 144/548 (26%), Gaps = 188/548 (34%)
Query: 499 HMD---NQADLTWT------CEAF-------GVPDVTYSWFRNGELLNSETLPLEDQDRY 542
HMD + + +AF V D+ S E+ +
Sbjct: 6 HMDFETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTL 65
Query: 543 FIQDNVLTIRYLNPER------------------DPAMYQCRAKNQLKTRYSSAQLRVLT 584
+ +L+ E P + R + + Y + R+
Sbjct: 66 RLFWTLLS----KQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYN 121
Query: 585 LKPSFKKRPLESETYAGEGGNVTIFCNPEAAPKPKFVWK---------KDGNII--GSGG 633
F K NV + + K N++ G G
Sbjct: 122 DNQVFAKY------------NV---------SRLQPYLKLRQALLELRPAKNVLIDGVLG 160
Query: 634 RRKIFENGNLLISPVSRD-------DSGIYSCTATNVHGMDESKGRLIVLHGPSYYEQLP 686
K + V D I+ N + + L +L Q+
Sbjct: 161 SGK-----TWVALDVCLSYKVQCKMDFKIFWLNLKNCN---SPETVLEMLQ--KLLYQID 210
Query: 687 PKITIAAHR--NLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNI----NIDGG 740
P T + N++LR + EL + + + L ++ N+
Sbjct: 211 PNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLL---VLLNVQNAKAWNAFNLSCK 267
Query: 741 LLEIT-NASFADAGEYECVVKSTVGKISTKTTVIVEGPPGLPGGVQVVEVHKTSATI--Q 797
+L T D + +T + L ++ +
Sbjct: 268 ILLTTRFKQVTDF----------LSAATTTHISLDHHSMTL--------TPDEVKSLLLK 309
Query: 798 WTDG--------ATNGRPITHYKIIART--NWNSTWFNVSEHVIGKEVDRYTGRKEASIE 847
+ D P IIA + + +TW N +HV D+ T E+S+
Sbjct: 310 YLDCRPQDLPREVLTTNPR-RLSIIAESIRDGLATWDN-WKHV---NCDKLTTIIESSL- 363
Query: 848 NVLVPWSTYEFKVIAGNELGYGEPSSPSPQYNTPADKPYQAPSRIGGGGGKIGDLSISWE 907
NVL P E++ + + LS+
Sbjct: 364 NVLEP---AEYR-----------------KM-------FD-------------RLSV--- 380
Query: 908 PLPREKQNAPNIYYKIFWR--KKNDTEFQSETLKEYGNVGIAVVRIPSEFYYTEY----E 961
P + P I + W K+D L +Y V + P E + E
Sbjct: 381 -FP-PSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYS----LVEKQPKESTISIPSIYLE 434
Query: 962 VKVQAIND 969
+KV+ N+
Sbjct: 435 LKVKLENE 442
Score = 45.6 bits (107), Expect = 9e-05
Identities = 85/577 (14%), Positives = 171/577 (29%), Gaps = 159/577 (27%)
Query: 229 FKEDYVQDRLVANLIDPLSDKRFTLSGGNL--IINDPRQVEDRGSYHCKASNKFGSIISE 286
F++ +V + ++ D + LS + II V G+ F +++S+
Sbjct: 25 FEDAFVDNFDCKDVQDMP---KSILSKEEIDHIIMSKDAVS--GTLRL-----FWTLLSK 74
Query: 287 SVQLAFGFIGEFNLKRAPEIGNQNWGKAMF---CDPPTNYPGVNYYWARDYFPNFVEEDK 343
++ F+ E L+ N + + P+ Y RD N D
Sbjct: 75 QEEMVQKFVEEV-LRI-----NYKFLMSPIKTEQRQPSM-MTRMYIEQRDRLYN----DN 123
Query: 344 RVFVSYD---GALYF---SALEQIDAGNY-------SCNVQSKVSDTGRNGPF---FPLK 387
+VF Y+ Y AL ++ D + K
Sbjct: 124 QVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFK 183
Query: 388 VF---------PHSNFQQL-KFPNNFPKTFPEAPKAGDKVRLECVAFGYPVPSYNWTRRG 437
+F P + + L K + ++L + RR
Sbjct: 184 IFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSI------QAELRR- 236
Query: 438 SPLPRNAYF--ENFNRILTI-PNV---KVEDQGEYICR---ASNDRSALESSVTISIQAE 488
+ + L + NV K + C+ + + VT + A
Sbjct: 237 -------LLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQ-----VTDFLSAA 284
Query: 489 PNFTIPLTDKHMDNQADLTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRY------ 542
I L + LT PD S + LP E
Sbjct: 285 TTTHISL----DHHSMTLT--------PDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSI 332
Query: 543 ---FIQDNVLTIRYLNPERDPAMYQCRAKNQLKTRYSSAQLRVLTLKPSFKKRPLESETY 599
I+D + T ++ ++L T S+ + L+P+ ++ +
Sbjct: 333 IAESIRDGLATWDN---------WKHVNCDKLTTIIESS---LNVLEPAEYRKMFDR--- 377
Query: 600 AGEGGNVTIFCNPEAAPKPKFV----WKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGI 655
+++F P +A P + W I + ++++ + +
Sbjct: 378 ------LSVF--PPSAHIPTILLSLIWFD-----------VIKSDVMVVVNKLHK----- 413
Query: 656 YSCTATNVHGMDESKGRLIVLHGPSYYEQLPPKITIAAHRNL----QLRCSAHTEELLDV 711
YS K I + ++ + A HR++ + + +++L+
Sbjct: 414 YSLVEKQ------PKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPP 467
Query: 712 A---YIWTHNGVRIGNMDLNELET--PNINIDGGLLE 743
Y ++H G + N++ E T + +D LE
Sbjct: 468 YLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLE 504
Score = 45.2 bits (106), Expect = 1e-04
Identities = 63/469 (13%), Positives = 124/469 (26%), Gaps = 162/469 (34%)
Query: 18 FSQTIDELE-LRCPQHWVQYRDSCYRFVKSPLKTR--------NDAK------LNCKSL- 61
++ D ++ H +Q R +KS +AK L+CK L
Sbjct: 213 WTSRSDHSSNIKLRIHSIQAELR--RLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILL 270
Query: 62 ---DSDLANVNDADEHGFIMYQLFWQDPQRRKWYFGGTQ-QSPNL---WVNEDGTNLNEL 114
+ + A + T + +L +++
Sbjct: 271 TTRFKQVTDFLSAAT----TTHISLDHHSM-----TLTPDEVKSLLLKYLD--------C 313
Query: 115 DAAFLPEPADNV---QRDYLAYSFSQSLKRWGFERVTGMEPLLFICEASIQKLHYLLNDD 171
LP + +A S L W + + L I E+S+ L +
Sbjct: 314 RPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEP--AEY 371
Query: 172 RTYQYGMDIENPD-KIPRGPYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFK 230
R + + P I PT ++ S++ WF
Sbjct: 372 RKMFDRLSVFPPSAHI---------PTILL------SLI------------------WFD 398
Query: 231 EDYVQDRLVANLIDPLS-----DKRFTLSGGNLIINDPRQVEDRGSYHCKASNKFGSIIS 285
+V N + S K T+S ++ + ++E+ + H
Sbjct: 399 VIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRS---------- 448
Query: 286 ESVQLAFGFIGEFNLKRAPEIGNQNWGKAMFCDPPTNYPGVNYYW----------ARDYF 335
+ +N+ + + + Y +Y +
Sbjct: 449 --------IVDHYNIPKTFD----SDDLIP--PYLDQY----FYSHIGHHLKNIEHPERM 490
Query: 336 PNFVEEDKRVFVSYDGALYFSALEQ-IDAGNYSCNVQSKVSDT-----------GRNGPF 383
F + VF+ + F LEQ I + + N + +T N P
Sbjct: 491 TLF----RMVFLDFR----F--LEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPK 540
Query: 384 FPLKV-----F-----------PHSNFQQLKFPNNFPKTFPEAPKAGDK 416
+ V F +++ ++ F EA K +
Sbjct: 541 YERLVNAILDFLPKIEENLICSKYTDLLRIALMAEDEAIFEEAHKQVQR 589
Score = 38.7 bits (89), Expect = 0.012
Identities = 78/657 (11%), Positives = 163/657 (24%), Gaps = 183/657 (27%)
Query: 158 EASIQKLHY--LLND-------DRTYQYGMDIENP-------DKIPRGPYFIKQPTDVVF 201
E + Y +L+ + + D+ D I + T +F
Sbjct: 10 ETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSG-TLRLF 68
Query: 202 DLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGNLIIN 261
+ + + +Y++ + P R + + + N
Sbjct: 69 WTLLSK--QEEMVQKFVEEVLRINYKFLMS-----PIKTEQRQPSMMTRMYIEQRDRLYN 121
Query: 262 D-----PRQVEDRGSYHCKASNK-----------------FG-SII------SESVQLAF 292
D V R + K G + + S VQ
Sbjct: 122 DNQVFAKYNVS-RLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKM 180
Query: 293 GF------IGEFN--------LKRAPEIGNQNWGKAMFCDPPTNYPGVNYYWARDYFPNF 338
F + N L++ + NW D +N + + +
Sbjct: 181 DFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSR--SDHSSNIK-LRIHSIQAELRRL 237
Query: 339 VEEDKRVFVSYDGALYFSAL---------EQIDAGNYSCNVQSKVSDTGRN-GPFFPLKV 388
++ Y + L + +A N SC K+ T R L
Sbjct: 238 LKSKP----------YENCLLVLLNVQNAKAWNAFNLSC----KILLTTRFKQVTDFLSA 283
Query: 389 FPHSNFQQLKFPNNFPKTFPEAPKAGDKVRLECVAFGYPVPSYNWTRRGSPL-------- 440
++ T E K L+C P +P
Sbjct: 284 ATTTHISLDHHSMTL--TPDEVKSLLLKY-LDCRPQDLPRE----VLTTNPRRLSIIAES 336
Query: 441 -----PRNAYFE--NFNRILTIPNVKVEDQGEYICRAS-NDRSALESSVTISIQAEPNFT 492
++ N +++ TI + R + S S I
Sbjct: 337 IRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTIL----- 391
Query: 493 IPLTDKHMDNQADLTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQDNVLTIR 552
L+ L W V + L+ + + I L ++
Sbjct: 392 --LS---------LIWFDVIKSDVMVVVNKLHKYSLVEKQP----KESTISIPSIYLELK 436
Query: 553 YLNPERDPAMYQCRAKNQLKTRYSSAQLRVLTLKPSFKKRPLESETY-----------AG 601
+ E + A+++ + Y + S P + Y
Sbjct: 437 -VKLENEYALHR-----SIVDHY-----NIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIE 485
Query: 602 EGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDS----GIYS 657
+T+F + F+ D + +KI + + S ++ Y
Sbjct: 486 HPERMTLF-------RMVFL---DFRFL----EQKIRHDSTAWNASGSILNTLQQLKFYK 531
Query: 658 CTATNVHGMDESKGRLIVLHGPSYYEQLPPKITIAAHRNL-QLRCSAHTEELLDVAY 713
+ E I+ + ++ + + + +L ++ A E + + A+
Sbjct: 532 PYICDNDPKYERLVNAIL----DFLPKIEENLICSKYTDLLRIALMAEDEAIFEEAH 584
>2edo_A CD48 antigen; beta-sandwich, IG-fold, B-lymphocyte activation
marker blast-1, BCM1 surface antigen, leukocyte antigen
MEM-102, TCT.1; NMR {Homo sapiens}
Length = 121
Score = 47.2 bits (112), Expect = 2e-06
Identities = 24/111 (21%), Positives = 38/111 (34%), Gaps = 24/111 (21%)
Query: 599 YAGEGGNVTIFCN-PEAAPKPKFVWKKDGN------------IIGSG--GRRKI-FENGN 642
G NVT+ + + W + S GR ++ ++G
Sbjct: 15 TVVSGSNVTLNISESLPENYKQLTWFYTFDQKIVEWDSRKSKYFESKFKGRVRLDPQSGA 74
Query: 643 LLISPVSRDDSGIYSCTATNVHG-MDESKGRLIVLHGPSYYEQLP-PKITI 691
L IS V ++D+ Y G E K +L V + +P P I I
Sbjct: 75 LYISKVQKEDNSTYIMRVLKKTGNEQEWKIKLQV------LDPVPKPVIKI 119
Score = 38.0 bits (88), Expect = 0.002
Identities = 21/115 (18%), Positives = 33/115 (28%), Gaps = 12/115 (10%)
Query: 677 HGPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNG-VRIGNMDLNELETPN- 734
G S L +T+ + N+ L S E W + +I D + +
Sbjct: 3 SGSSGQGHLVH-MTVVSGSNVTLNISESLPENYK-QLTWFYTFDQKIVEWDSRKSKYFES 60
Query: 735 -------INIDGGLLEITNASFADAGEYECVVKSTVGKISTKT-TVIVEGPPGLP 781
++ G L I+ D Y V G + V P P
Sbjct: 61 KFKGRVRLDPQSGALYISKVQKEDNSTYIMRVLKKTGNEQEWKIKLQVLDPVPKP 115
Score = 30.3 bits (68), Expect = 1.1
Identities = 12/70 (17%), Positives = 28/70 (40%), Gaps = 13/70 (18%)
Query: 221 YPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVEDRGSYHCKASNKF 280
+ + ++F+ + + R+ R G L I+ ++ ED +Y + K
Sbjct: 50 WDSRKSKYFESKF-KGRV-----------RLDPQSGALYISKVQK-EDNSTYIMRVLKKT 96
Query: 281 GSIISESVQL 290
G+ ++L
Sbjct: 97 GNEQEWKIKL 106
Score = 30.3 bits (68), Expect = 1.3
Identities = 8/23 (34%), Positives = 9/23 (39%)
Query: 453 LTIPNVKVEDQGEYICRASNDRS 475
L I V+ ED YI R
Sbjct: 75 LYISKVQKEDNSTYIMRVLKKTG 97
>2cui_A Tenascin-X; fibronectin type III domain, extracellular matirx,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
b.1.2.1
Length = 112
Score = 46.1 bits (109), Expect = 3e-06
Identities = 12/99 (12%), Positives = 27/99 (27%), Gaps = 4/99 (4%)
Query: 775 EGPPGLPGGVQVVEVHKTSATIQWTDGATNGRPITHYKIIARTNWNSTWFNVSEHVIGKE 834
G + V +V +S + W + + ST ++ +E
Sbjct: 6 SGSRPRLSQLSVTDVTTSSLRLNWEAPPG---AFDSFLLRFGVPSPSTLEPHPRPLLQRE 62
Query: 835 VDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSS 873
+ R A + + L + Y + +
Sbjct: 63 LMVPGTRHSAVLRD-LRSGTLYSLTLYGLRGPHKADSIQ 100
>3d85_D IL-12B, interleukin-12 subunit P40, cytotoxic lymphocyte; FAB,
immune system/cytokine complex; 1.90A {Homo sapiens}
SCOP: b.1.1.4 b.1.2.1 b.1.2.1 PDB: 3d87_B* 3duh_A*
1f42_A* 1f45_A* 3hmx_A* 3qwr_A*
Length = 306
Score = 49.3 bits (116), Expect = 3e-06
Identities = 44/305 (14%), Positives = 79/305 (25%), Gaps = 51/305 (16%)
Query: 696 NLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEITNASFADAGEY 755
+ L C E+ WT + + + G L I F DAG+Y
Sbjct: 23 MVVLTCDTPEED----GITWTLDQ------------SSEVLGSGKTLTIQVKEFGDAGQY 66
Query: 756 ECVVKSTV-------------GKISTKTTVIVEGPPGLPGGVQVVEVHKTSATIQWTDGA 802
C V G ST + P + + T W
Sbjct: 67 TCHKGGEVLSHSLLLLHKKEDGIWSTDILKDQKEPKNKTFLRCEAKNYSGRFTCWWLTT- 125
Query: 803 TNGRPITHYKIIARTNWNSTWFNVSEHVIGKEVDRYTGRKEASIENVLVP-------WST 855
+ K ++ + + + V E S+E
Sbjct: 126 ISTDLTFSVKSSRGSSDPQGVTCGAATLSAERVRGDNKEYEYSVECQEDSACPAAEESLP 185
Query: 856 YEFKVIAGNELGYGEPSSPSPQYNTPADKPYQAPSRIGGGGGKIGDLSISWEPLPREKQN 915
E V A ++L Y S + KP + + +SWE P
Sbjct: 186 IEVMVDAVHKLKY--EQYTSSFFIRDIIKPDPPKNLQLKPLKNSRQVEVSWEY-PDTWST 242
Query: 916 APNIY---YKIFWRKKNDTEFQSETLKEYGNVGIAVVRIPSEFYYTEYEVKVQAINDVGP 972
+ + + + + K+ E + + + + + V+A +
Sbjct: 243 PHSYFSLTFCVQVQGKSKREKKDRVFTDKTSATVIC--------RKNASISVRAQDRYYS 294
Query: 973 GPESE 977
SE
Sbjct: 295 SSWSE 299
Score = 48.6 bits (114), Expect = 5e-06
Identities = 33/301 (10%), Positives = 72/301 (23%), Gaps = 52/301 (17%)
Query: 602 EGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGN-LLISPVSRDDSGIYSCTA 660
G V + C + + W D ++ +G L I D+G Y+C
Sbjct: 20 PGEMVVLTC--DTPEEDGITWTLDQ-------SSEVLGSGKTLTIQVKEFGDAGQYTCHK 70
Query: 661 TN-----VHGMDESKGRLIVLHGPSYYEQLPPKIT----IAAHRNLQLRCSAHTEELLDV 711
+ K I ++ P T A + + + C T D+
Sbjct: 71 GGEVLSHSLLLLHKKEDGIWSTDILKDQKEPKNKTFLRCEAKNYSGRFTCWWLTTISTDL 130
Query: 712 AYIWT----HNGVRIGNMDLNELETPNINIDGGLLEITNASFADAGE----------YEC 757
+ + + L + D E + D+
Sbjct: 131 TFSVKSSRGSSDPQGVTCGAATLSAERVRGDNKEYEYSVECQEDSACPAAEESLPIEVMV 190
Query: 758 VVKSTVGKISTKTTVIVE--GPPGLPGGVQVVEVHKTSA-TIQWTDGATNGRPITHYKI- 813
+ ++ + P P +Q+ + + + W T P +++ +
Sbjct: 191 DAVHKLKYEQYTSSFFIRDIIKPDPPKNLQLKPLKNSRQVEVSWEYPDTWSTPHSYFSLT 250
Query: 814 --IARTNWNSTWFNVSEHVIGKEVDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEP 871
+ + ++ V A +
Sbjct: 251 FCVQVQGKSKREKKDRVFTDKTSAT-------------VICRKNASISVRAQDRYYSSSW 297
Query: 872 S 872
S
Sbjct: 298 S 298
Score = 37.4 bits (85), Expect = 0.020
Identities = 23/127 (18%), Positives = 36/127 (28%), Gaps = 15/127 (11%)
Query: 404 PKTFPEAPKAGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYFENFNRILTIPNVKVEDQ 463
+P+AP G+ V L C WT S + + LTI + D
Sbjct: 13 LDWYPDAP--GEMVVLTCD--TPEEDGITWTLDQSSEVLGSG-----KTLTIQVKEFGDA 63
Query: 464 GEYICRASNDRSALESSVTISIQAEPNFTIPLTDKHMDNQADLTWT--CEAFGVP-DVTY 520
G+Y C + S + + + + + CEA T
Sbjct: 64 GQYTCHKGGEVL---SHSLLLLHKKEDGIWSTDILKDQKEPKNKTFLRCEAKNYSGRFTC 120
Query: 521 SWFRNGE 527
W
Sbjct: 121 WWLTTIS 127
>1ujt_A KIAA1568 protein; fibronectin type III domain, structural genomics,
riken structural genomics/proteomics initiative, RSGI,
unknown function; NMR {Homo sapiens} SCOP: b.1.2.1
Length = 120
Score = 46.4 bits (110), Expect = 3e-06
Identities = 14/85 (16%), Positives = 30/85 (35%), Gaps = 18/85 (21%)
Query: 902 LSISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETLKEYGNVGIAVVRIPSEFY----- 956
+ ++W Q Y++ +R+ + + S ++P+E
Sbjct: 32 VQVTWTVDR---QPQFIQGYRVMYRQTSGLQATSSWQNL-------DAKVPTERSAVLVN 81
Query: 957 ---YTEYEVKVQAINDVGPGPESEV 978
YE+KV+ + G +SE
Sbjct: 82 LKKGVTYEIKVRPYFNEFQGMDSES 106
Score = 38.3 bits (89), Expect = 0.002
Identities = 16/83 (19%), Positives = 27/83 (32%), Gaps = 6/83 (7%)
Query: 792 TSATIQWTDGATNGRPITHYKIIARTNWNSTWFNVSEHVIGKEVDRYTGRKEASIENVLV 851
T+ + WT I Y+++ R ++ + + + A + N L
Sbjct: 30 TTVQVTWTVDRQPQ-FIQGYRVMYRQ---TSGLQATSSWQNLDAKV-PTERSAVLVN-LK 83
Query: 852 PWSTYEFKVIAGNELGYGEPSSP 874
TYE KV G S
Sbjct: 84 KGVTYEIKVRPYFNEFQGMDSES 106
>1rdl_1 SUB-MBP-C, mannose-binding protein-C; C-type lectin,
calcium-binding protein; HET: MMA; 1.70A {Rattus rattus}
SCOP: d.169.1.1 PDB: 1rdj_1* 1rdk_1* 1rdi_1* 1rdm_1*
1rdn_1* 1rdo_1 1bv4_A 1kza_1* 1kzb_1* 1kzc_1* 1kzd_1*
1kze_1*
Length = 113
Score = 46.1 bits (110), Expect = 3e-06
Identities = 15/74 (20%), Positives = 29/74 (39%), Gaps = 8/74 (10%)
Query: 40 CYRFVKSPLKTRNDAKLNCKSLDSDLANVNDADEHGFIMYQLFWQDPQRRKWYFGGT-QQ 98
+ N AK C L +A +A+E+ I Q+ + + G T Q+
Sbjct: 3 YFMSSVRR-MPLNRAKALCSELQGTVATPRNAEENRAI------QNVAKDVAFLGITDQR 55
Query: 99 SPNLWVNEDGTNLN 112
+ N++ + G +
Sbjct: 56 TENVFEDLTGNRVR 69
>3q0h_A T cell immunoreceptor with IG and ITIM domains; immune receptor,
adhesion, structural genomics, NEW YORK STR genomics
research consortium, nysgrc; 1.70A {Homo sapiens} PDB:
3rq3_A 3udw_A* 3ucr_A
Length = 117
Score = 46.1 bits (109), Expect = 3e-06
Identities = 16/102 (15%), Positives = 32/102 (31%), Gaps = 16/102 (15%)
Query: 595 ESETYAGEGGNVTIFCNPEAAPKPKFV--WKKDGNIIGS-------------GGRRKIFE 639
A +GG++ + C+ + W++ ++ R
Sbjct: 10 TGNISAEKGGSIILQCHLSSTTAQVTQVNWEQQDQLLAICNADLGWHISPSFKDRVAPGP 69
Query: 640 NGNLLISPVSRDDSGIYSCT-ATNVHGMDESKGRLIVLHGPS 680
L + ++ +D+G Y C T G + L VL
Sbjct: 70 GLGLTLQSLTVNDTGEYFCIYHTYPDGTYTGRIFLEVLESSV 111
Score = 38.4 bits (89), Expect = 0.002
Identities = 14/103 (13%), Positives = 32/103 (31%), Gaps = 8/103 (7%)
Query: 684 QLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIG------NMDLNELETPNINI 737
+ I+ ++ L+C + W + ++ +
Sbjct: 8 ETTGNISAEKGGSIILQCHLSSTTAQVTQVNWEQQDQLLAICNADLGWHISPSFKDRVAP 67
Query: 738 DGGL-LEITNASFADAGEYECVVKS-TVGKISTKTTVIVEGPP 778
GL L + + + D GEY C+ + G + + + V
Sbjct: 68 GPGLGLTLQSLTVNDTGEYFCIYHTYPDGTYTGRIFLEVLESS 110
Score = 38.0 bits (88), Expect = 0.003
Identities = 16/95 (16%), Positives = 31/95 (32%), Gaps = 21/95 (22%)
Query: 414 GDKVRLECV--AFGYPVPSYNWTRRGSPLPRNAYFENF---------NRI-------LTI 455
G + L+C + V NW ++ L + +R+ LT+
Sbjct: 18 GGSIILQCHLSSTTAQVTQVNWEQQDQLLA--ICNADLGWHISPSFKDRVAPGPGLGLTL 75
Query: 456 PNVKVEDQGEYICR-ASNDRSALESSVTISIQAEP 489
++ V D GEY C + + + +
Sbjct: 76 QSLTVNDTGEYFCIYHTYPDGTYTGRIFLEVLESS 110
Score = 32.2 bits (73), Expect = 0.25
Identities = 17/86 (19%), Positives = 25/86 (29%), Gaps = 7/86 (8%)
Query: 211 DITLSCYAGGYPNPSY--EWFKEDYVQDRLVANL---IDPLSDKRFTLSG-GNLIINDPR 264
I L C+ W ++D + A+L I P R L +
Sbjct: 20 SIILQCHLSSTTAQVTQVNWEQQDQLLAICNADLGWHISPSFKDRVAPGPGLGLTLQSLT 79
Query: 265 QVEDRGSYHCKASNKFGSIISESVQL 290
V D G Y C + + L
Sbjct: 80 -VNDTGEYFCIYHTYPDGTYTGRIFL 104
Score = 28.3 bits (63), Expect = 4.2
Identities = 8/29 (27%), Positives = 10/29 (34%)
Query: 344 RVFVSYDGALYFSALEQIDAGNYSCNVQS 372
RV L +L D G Y C +
Sbjct: 64 RVAPGPGLGLTLQSLTVNDTGEYFCIYHT 92
>2edn_A Myosin-binding protein C, fast-type; beta-sandwich, IG-fold, fast
MYBP-C, C-protein, skeletal muscle fast isoform,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 118
Score = 46.0 bits (108), Expect = 4e-06
Identities = 23/115 (20%), Positives = 29/115 (25%), Gaps = 17/115 (14%)
Query: 576 SSAQLRVLTLKPSFKKRPLESETYAGEGGNVTIFCNPEAAP---KPKFVWKKDGNI---I 629
SS F K+P G + + KP W K +
Sbjct: 2 SSGSSGAEEPTGVFLKKP--DSVSVETGKDAVVVAKVNGKELPDKPTIKWFKGKWLELGS 59
Query: 630 GSGGRRKIFENGN---------LLISPVSRDDSGIYSCTATNVHGMDESKGRLIV 675
SG R E+ N L I V D G Y D + V
Sbjct: 60 KSGARFSFKESHNSASNVYTVELHIGKVVLGDRGYYRLEVKAKDTCDSCGFNIDV 114
Score = 42.9 bits (100), Expect = 4e-05
Identities = 21/99 (21%), Positives = 33/99 (33%), Gaps = 7/99 (7%)
Query: 686 PPKITIAAHRNLQLRCSAHTEELLDVAYI------WTHNGVRIG-NMDLNELETPNINID 738
P +++ ++ + + +EL D I W G + G E N+
Sbjct: 19 PDSVSVETGKDAVVVAKVNGKELPDKPTIKWFKGKWLELGSKSGARFSFKESHNSASNVY 78
Query: 739 GGLLEITNASFADAGEYECVVKSTVGKISTKTTVIVEGP 777
L I D G Y VK+ S + VE P
Sbjct: 79 TVELHIGKVVLGDRGYYRLEVKAKDTCDSCGFNIDVEAP 117
Score = 39.4 bits (91), Expect = 7e-04
Identities = 18/109 (16%), Positives = 33/109 (30%), Gaps = 12/109 (11%)
Query: 181 ENPDKIPRGPYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPN---PSYEWFKEDYVQDR 237
+ F+K+P V + K D + G P+ +WFK +++
Sbjct: 4 GSSGAEEPTGVFLKKPDSVSVETGK-----DAVVVAKVNGKELPDKPTIKWFKGKWLELG 58
Query: 238 LVANL---IDPLSDKRFTLSGGNLIINDPRQVEDRGSYHCKASNKFGSI 283
+ + + L I + DRG Y + K
Sbjct: 59 SKSGARFSFKESHNSASNVYTVELHIGKV-VLGDRGYYRLEVKAKDTCD 106
Score = 36.7 bits (84), Expect = 0.007
Identities = 15/109 (13%), Positives = 29/109 (26%), Gaps = 21/109 (19%)
Query: 400 PNNFPKTFPEAPK-----AGDKVRLECVAFGYPV---PSYNWTR---------RGSPLPR 442
F + P G + G + P+ W + G+
Sbjct: 8 AEEPTGVFLKKPDSVSVETGKDAVVVAKVNGKELPDKPTIKWFKGKWLELGSKSGARFSF 67
Query: 443 NAYFENFNRI----LTIPNVKVEDQGEYICRASNDRSALESSVTISIQA 487
+ + + L I V + D+G Y + I ++A
Sbjct: 68 KESHNSASNVYTVELHIGKVVLGDRGYYRLEVKAKDTCDSCGFNIDVEA 116
>1x5a_A Ephrin type-A receptor 1; tyrosine-protein kinase receptor, ESK,
fibronectin type III (FN3) domain, structural genomics,
NPPSFA; NMR {Mus musculus} SCOP: b.1.2.1
Length = 107
Score = 45.2 bits (107), Expect = 5e-06
Identities = 15/76 (19%), Positives = 28/76 (36%), Gaps = 9/76 (11%)
Query: 902 LSISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETLKEYGNVGIAVVRIPSEFYYTEYE 961
L ++W N+ Y++ +++ Q + P T Y
Sbjct: 26 LELTWAGSRPRNPG-GNLSYELHVLNQDEEWHQMVLEPRVLLTKLQ----P----DTTYI 76
Query: 962 VKVQAINDVGPGPESE 977
V+V+ + +GPGP S
Sbjct: 77 VRVRTLTPLGPGPFSP 92
Score = 43.2 bits (102), Expect = 2e-05
Identities = 22/119 (18%), Positives = 36/119 (30%), Gaps = 20/119 (16%)
Query: 774 VEGPPGLPG-GVQVVEVHKTSATIQWTDGATNGR-PITHYKIIARTNWNSTWFNVSEHVI 831
G L G +++V+ + W Y++
Sbjct: 5 SSGAESLSGLSLKLVKKEPRQLELTWAGSRPRNPGGNLSYELHVLNQ------------- 51
Query: 832 GKEVDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPSPQYNTPADKPYQAPS 890
+E + + L P +TY +V LG G P SP ++ T P PS
Sbjct: 52 DEEWHQMVLEPRVLLTK-LQPDTTYIVRVRTLTPLGPG-PFSPDHEFRT---SPPSGPS 105
>4doh_R Interleukin-20 receptor subunit alpha; IL10 family cytokine
receptor complex, alpha helical cytokin beta sandwhich
receptor fold, signaling complex; HET: NAG; 2.80A {Homo
sapiens}
Length = 221
Score = 47.5 bits (112), Expect = 6e-06
Identities = 28/218 (12%), Positives = 52/218 (23%), Gaps = 31/218 (14%)
Query: 778 PGLPGGV---QVVEVH--KTSATIQWTDGATNGRPITHYKIIARTNWNSTWFNVSEHVIG 832
P + GG+ + +QWT Y + W N SE
Sbjct: 3 PCVSGGLPKPANITFLSINMKNVLQWTPPEGLQGVKVTYTVQYFIYGQKKWLNKSEC--- 59
Query: 833 KEVDRYTGRKEASI-ENVLVPWSTYEFKVIAGNELGYGEPSSPSPQYNTPADKPYQAPSR 891
R R + Y +V A + S ++ + P
Sbjct: 60 ----RNINRTYCDLSAETSDYEHQYYARVRAIWGTKCS-KWAESGRFYPFLETQIGPPEV 114
Query: 892 IGGGGGKIGDLSISWEPLPREKQNA---------PNIYYKIFWRKKNDTEFQSETLKEYG 942
K + ++ + N+ Y + S+ + +
Sbjct: 115 ALTTDEKSISVVLTAPEKWKRNPEDLPVSMQQIYSNLKYNVSVLNTKSNRTWSQCVTNH- 173
Query: 943 NVGIAVVRIPSEFYYTEYEVKVQAINDV--GPGPESEV 978
+ + T Y V V++ SE
Sbjct: 174 -----TLVLTWLEPNTLYCVHVESFVPGPPRRAQPSEK 206
>1eer_B Epobp, erythropoietin receptor; signal transduction, hematopoietic
cytokine, cytokine receptor class 1, complex
(cytokine/receptor); 1.90A {Homo sapiens} SCOP: b.1.2.1
b.1.2.1 PDB: 1cn4_A 2jix_B 1eba_A* 1ern_A 1ebp_A
Length = 227
Score = 47.4 bits (112), Expect = 8e-06
Identities = 26/204 (12%), Positives = 49/204 (24%), Gaps = 14/204 (6%)
Query: 777 PPGLPGGVQVVEVHKTSATIQWTDGATNGRPITHYKII-ARTNWNSTWFNVSEHVIGKEV 835
P + W + A+ G Y + + + +
Sbjct: 20 AARGPEELLCFTERLEDLVCFWEEAASAGVGPGQYSFSYQLEDEPWKLCRLHQAPTARGA 79
Query: 836 DRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPSPQYNTPADKPYQAPSRIGGG 895
R+ + + E +V A + G P + +
Sbjct: 80 VRFWCSLPTA---DTSSFVPLELRVTAAS----GAPRYHRVIHINEVVLLDAPVGLVARL 132
Query: 896 GGKIGDLSISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETLKEYGNVGIAVVRIPSEF 955
+ G + + W P P E +I Y++ G + +
Sbjct: 133 ADESGHVVLRWLP-PPETPMTSHIRYEVDVSAGQGAGSVQRVEILEGRT---ECVLSNLR 188
Query: 956 YYTEYEVKVQAINDVGP--GPESE 977
T Y V+A G SE
Sbjct: 189 GRTRYTFAVRARMAEPSFGGFWSE 212
>3nvq_A Semaphorin-7A; beta-propeller, signaling, signaling protein-protein
binding; HET: NAG NDG; 2.40A {Homo sapiens}
Length = 590
Score = 47.7 bits (112), Expect = 2e-05
Identities = 12/58 (20%), Positives = 19/58 (32%), Gaps = 1/58 (1%)
Query: 604 GNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTAT 661
+ C E+ + W+ N+ S N L I ++ G Y C A
Sbjct: 516 SRYYLSCPMES-RHATYSWRHKENVEQSCEPGHQSPNCILFIENLTAQQYGHYFCEAQ 572
Score = 40.4 bits (93), Expect = 0.003
Identities = 18/82 (21%), Positives = 28/82 (34%), Gaps = 4/82 (4%)
Query: 390 PHSNFQQLKFPNNFPKTFPEAPKAGDKVRLECVAFGYPVPSYNWTRRGSPLPRNA-YFEN 448
PH K + AP + L C +Y+W + + ++
Sbjct: 493 PHKECPNPKPDKAPLQKVSLAPN--SRYYLSCPMES-RHATYSWRHKENVEQSCEPGHQS 549
Query: 449 FNRILTIPNVKVEDQGEYICRA 470
N IL I N+ + G Y C A
Sbjct: 550 PNCILFIENLTAQQYGHYFCEA 571
Score = 33.8 bits (76), Expect = 0.31
Identities = 16/101 (15%), Positives = 32/101 (31%), Gaps = 10/101 (9%)
Query: 677 HGPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNIN 736
P + K+++A + L C + Y W H + + P
Sbjct: 498 PNPKPDKAPLQKVSLAPNSRYYLSCPMES---RHATYSWRHKENVEQSCE------PGHQ 548
Query: 737 IDGGLLEITNASFADAGEYECV-VKSTVGKISTKTTVIVEG 776
+L I N + G Y C + + + + ++ E
Sbjct: 549 SPNCILFIENLTAQQYGHYFCEAQEGSYFREAQHWQLLPED 589
Score = 30.8 bits (68), Expect = 2.5
Identities = 20/120 (16%), Positives = 38/120 (31%), Gaps = 15/120 (12%)
Query: 157 CEASIQKLHYLLNDDRTYQYGMDIENPDKIPRGPYFIKQPTDVVFDLSKRSILNDITLSC 216
C + + + +R+ ++ P K P K P V + + LSC
Sbjct: 467 CGWDQGRCISIYSSERSVLQSINPAEPHKECPNPKPDKAPLQKVS----LAPNSRYYLSC 522
Query: 217 YAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVEDRGSYHCKA 276
+ +Y W ++ N+ + + I N + G Y C+A
Sbjct: 523 PMES-RHATYSWRHKE--------NVEQSCEPGHQSPNCILFIENL--TAQQYGHYFCEA 571
Score = 29.6 bits (65), Expect = 6.0
Identities = 10/52 (19%), Positives = 17/52 (32%), Gaps = 4/52 (7%)
Query: 317 CDPPTNYPGVNYYWARDYFPNFVEEDKRVFVSYDGALYFSALEQIDAGNYSC 368
C + + Y W N + + S + L+ L G+Y C
Sbjct: 522 CPMESRHA--TYSWRHK--ENVEQSCEPGHQSPNCILFIENLTAQQYGHYFC 569
>2wqr_A IG epsilon chain C region; immune system, immunoglobulin domain,
glycoprotein; HET: NAG BMA MAN PG4; 1.90A {Homo sapiens}
PDB: 2y7q_B* 1o0v_A* 3h9y_A* 3h9z_A* 3ha0_A* 1fp5_A
1f6a_B 1g84_A
Length = 323
Score = 46.6 bits (110), Expect = 2e-05
Identities = 31/223 (13%), Positives = 56/223 (25%), Gaps = 32/223 (14%)
Query: 353 LYFSALEQIDAGNYSCNVQSKVSDTGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPEAPK 412
L S + Y+C V + G F ++ + P
Sbjct: 74 LTLSQKHWLSDRTYTCQVTYQ-------GHTFEDSTKKCADSNPRGVSAYLSRPSPFDLF 126
Query: 413 AGDKVRLECVAFGYPVPSYN----WTRRGSPLPRNAYFENFNR----------ILTIPNV 458
+ C+ W+R P N + L +
Sbjct: 127 IRKSPTITCLVVDLAPSKGTVQLTWSRASGK-PVNHSTRKEEKQRNGTLTVTSTLPVGTR 185
Query: 459 KVEDQGEYICRASNDRSALESSVTISIQ----AEPNFTIPLTDKHMDNQADLTWTCEA-- 512
+ Y CR ++ + + A P T + ++ T C
Sbjct: 186 DWIEGETYQCRVTHPHLPRALMRSTTKTSGPRAAPEVYAFATPEWPGSRDKRTLACLIQN 245
Query: 513 FGVPDVTYSWFRNGELLNSE----TLPLEDQDRYFIQDNVLTI 551
F D++ W N L T P + + F + L +
Sbjct: 246 FMPEDISVQWLHNEVQLPDARHSTTQPRKTKGSGFFVFSRLEV 288
Score = 42.0 bits (98), Expect = 6e-04
Identities = 43/294 (14%), Positives = 81/294 (27%), Gaps = 29/294 (9%)
Query: 492 TIPLTDKHMDNQADLTWTCEAFGV--PDVTYSWFRNGELLNS--ETLPLEDQDRYFIQDN 547
D + C G + +W +G++++ T + +
Sbjct: 13 LQSSCDGGGHFPPTIQLLCLVSGYTPGTIQITWLEDGQVMDVDLSTASTTQEGELASTQS 72
Query: 548 VLTIRYLNPERDPAMYQCRAKNQLKTRYSSAQLRVLTLKPS---FKKRPLESETYAGEGG 604
LT+ + D Y C+ Q T S + + + RP + + +
Sbjct: 73 ELTLSQKHWLSD-RTYTCQVTYQGHTFEDSTKKCADSNPRGVSAYLSRPSPFDLFIRKSP 131
Query: 605 NVTIFCN--PEAAPKPKFVWKKDGNIIGSG--GRRKIFENG------NLLISPVSRDDSG 654
+T + + W + + + + NG L + +
Sbjct: 132 TITCLVVDLAPSKGTVQLTWSRASGKPVNHSTRKEEKQRNGTLTVTSTLPVGTRDWIEGE 191
Query: 655 IYSCTATNVHGMDESKGRLIVLHGPSYYEQ---LPPKITIAAHRNLQLRCSAHTEELLDV 711
Y C T+ H GP + + L C D+
Sbjct: 192 TYQCRVTHPHLPRALMRSTTKTSGPRAAPEVYAFATPEWPGSRDKRTLACLIQNFMPEDI 251
Query: 712 AYIWTHNGVRIGNMDLNELETPNINIDGG------LLEITNASFADAGEYECVV 759
+ W HN V++ D T G LE+T A + E+ C
Sbjct: 252 SVQWLHNEVQLP--DARHSTTQPRKTKGSGFFVFSRLEVTRAEWEQKDEFICRA 303
Score = 33.1 bits (75), Expect = 0.45
Identities = 26/209 (12%), Positives = 49/209 (23%), Gaps = 29/209 (13%)
Query: 596 SETYAGEGGNVTIFC-----NPEAAPKPKFVWKKDGNIIGSGGR--RKIFENGN------ 642
+ + + C P + W +DG ++ E
Sbjct: 17 CDGGGHFPPTIQLLCLVSGYTPGTI---QITWLEDGQVMDVDLSTASTTQEGELASTQSE 73
Query: 643 LLISPVSRDDSGIYSCTAT---NVHGMDESKGRLIVLHGPSYYEQLPPKITIAAHRNLQL 699
L +S Y+C T + K G S Y P + ++ +
Sbjct: 74 LTLSQKHWLSDRTYTCQVTYQGHTFEDSTKKCADSNPRGVSAYLSRPSPFDLFIRKSPTI 133
Query: 700 RCSAH--TEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGG-----LLEITNASFADA 752
C V W+ G + +G L + + +
Sbjct: 134 TCLVVDLAPSKGTVQLTWSRAS---GKPVNHSTRKEEKQRNGTLTVTSTLPVGTRDWIEG 190
Query: 753 GEYECVVKSTVGKISTKTTVIVEGPPGLP 781
Y+C V + + P
Sbjct: 191 ETYQCRVTHPHLPRALMRSTTKTSGPRAA 219
>1hzh_H IGG, immunoglobulin heavy chain; antibody, immune system; HET: NAG
BMA MAN GAL FUC; 2.70A {Homo sapiens} SCOP: b.1.1.1
b.1.1.2 b.1.1.2 b.1.1.2 PDB: 2ig2_H 1mco_H*
Length = 457
Score = 46.8 bits (111), Expect = 2e-05
Identities = 47/225 (20%), Positives = 64/225 (28%), Gaps = 35/225 (15%)
Query: 359 EQIDAGNYSCNVQSKVSDT--------GRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPEA 410
+ Y CNV K S+T P FP +
Sbjct: 201 SSLGTQTYICNVNHKPSNTKVDKKAEPKSCDKTHTCPPCPAPELLGGPSVFLFPPKPKDT 260
Query: 411 PKAGDKVRLECVAFGYPVPSY----NWTRRGSPLPRNAYFENFNRI----------LTIP 456
+ CV NW G + NA + LT+
Sbjct: 261 LMISRTPEVTCVVVDVSHEDPEVKFNWYVDGVEV-HNAKTKPREEQYNSTYRVVSVLTVL 319
Query: 457 NVKVEDQGEYICRASNDRSALESSVTISIQAEPNFTI------PLTDKHMDNQADLTWTC 510
+ + EY C+ SN TIS P D+ NQ L TC
Sbjct: 320 HQDWLNGKEYKCKVSNKALPAPIEKTISKAKGQPREPQVYTLPPSRDELTKNQVSL--TC 377
Query: 511 EAFGV--PDVTYSWFRNGELLNSE--TLPLEDQDRYFIQDNVLTI 551
G D+ W NG+ N+ T P+ D D F + LT+
Sbjct: 378 LVKGFYPSDIAVEWESNGQPENNYKTTPPVLDSDGSFFLYSKLTV 422
>1xiw_A T-cell surface glycoprotein CD3 epsilon chain; CD3-epsilon,
CD3-delta, UCHT1-SCFV, immunoglobulin fold,
antibody-antigen complex; 1.90A {Homo sapiens} SCOP:
b.1.1.4
Length = 105
Score = 43.2 bits (101), Expect = 3e-05
Identities = 14/70 (20%), Positives = 25/70 (35%), Gaps = 5/70 (7%)
Query: 603 GGNVTIFCNPEAAPKPKFVWKKDGNIIGS--GGRRKIFENGNLLISPVSR-DDSGIYSCT 659
G V + C P + +W+ + IG + + +L + S + SG Y C
Sbjct: 21 GTTVILTCPQY--PGSEILWQHNDKNIGGDEDDKNIGSDEDHLSLKEFSELEQSGYYVCY 78
Query: 660 ATNVHGMDES 669
D +
Sbjct: 79 PRGSKPEDAN 88
Score = 40.9 bits (95), Expect = 2e-04
Identities = 15/82 (18%), Positives = 25/82 (30%), Gaps = 11/82 (13%)
Query: 210 NDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLS-GGNLIINDPRQVED 268
+ L+C YP W D I D + S +L + + ++E
Sbjct: 22 TTVILTCPQ--YPGSEILWQHND--------KNIGGDEDDKNIGSDEDHLSLKEFSELEQ 71
Query: 269 RGSYHCKASNKFGSIISESVQL 290
G Y C + + L
Sbjct: 72 SGYYVCYPRGSKPEDANFYLYL 93
Score = 36.3 bits (83), Expect = 0.007
Identities = 8/68 (11%), Positives = 22/68 (32%), Gaps = 6/68 (8%)
Query: 505 DLTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQDNVLTIRYLNPERDPAMYQ 564
+ TC + ++ W N + + + D ++ L+++ + Y
Sbjct: 23 TVILTCPQYPGSEIL--WQHNDKNIGGDE----DDKNIGSDEDHLSLKEFSELEQSGYYV 76
Query: 565 CRAKNQLK 572
C +
Sbjct: 77 CYPRGSKP 84
Score = 32.4 bits (73), Expect = 0.18
Identities = 12/64 (18%), Positives = 21/64 (32%), Gaps = 6/64 (9%)
Query: 413 AGDKVRLECVAFGYPVPSYNWTRRGSPLP---RNAYFENFNRILTIPNV-KVEDQGEYIC 468
+G V L C YP W + + + L++ ++E G Y+C
Sbjct: 20 SGTTVILTCPQ--YPGSEILWQHNDKNIGGDEDDKNIGSDEDHLSLKEFSELEQSGYYVC 77
Query: 469 RASN 472
Sbjct: 78 YPRG 81
Score = 29.7 bits (66), Expect = 1.4
Identities = 19/87 (21%), Positives = 34/87 (39%), Gaps = 10/87 (11%)
Query: 683 EQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLL 742
Q P K++I+ + L C + + +W HN IG + + NI D L
Sbjct: 11 TQTPYKVSISG-TTVILTCPQYPGSEI----LWQHNDKNIGGDE----DDKNIGSDEDHL 61
Query: 743 EITNAS-FADAGEYECVVKSTVGKIST 768
+ S +G Y C + + + +
Sbjct: 62 SLKEFSELEQSGYYVCYPRGSKPEDAN 88
>2gys_A Cytokine receptor common beta chain; dimer of interlocking chains
of fibronectin-III domains, FOU fibronectin-III domains
PER chain; HET: NAG FUC BMA NDG; 2.70A {Homo sapiens}
SCOP: b.1.2.1 b.1.2.1 b.1.2.1 b.1.2.1 PDB: 1gh7_A*
3cxe_A* 1egj_A* 1c8p_A
Length = 419
Score = 46.5 bits (109), Expect = 3e-05
Identities = 31/214 (14%), Positives = 66/214 (30%), Gaps = 25/214 (11%)
Query: 771 TVIVEGPPGLPGGVQVVEVHKTSATIQWTDGATNGR------PITHYKIIARTNWNSTWF 824
T+ P P +Q+ + + W+ + + ++++ + +S W
Sbjct: 102 TLTQHVQPPEPRDLQISTD-QDHFLLTWSVALGSPQSHWLSPGDLEFEVVYKRLQDS-WE 159
Query: 825 NVSEHVIGKEVDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPSP----QYNT 880
+ + + L+P STY +V G PS
Sbjct: 160 DAAILLSNTSQATLGPEH-------LMPSSTYVARVRTRLAPGSRLSGRPSKWSPEVCWD 212
Query: 881 PADKPYQAPSRIGGGGGKIGDLSISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETLKE 940
P + LS SWE K+ A ++ + +F++ D +E
Sbjct: 213 SQPGDEAQPQNLECFFDGAAVLSCSWEV---RKEVASSVSFGLFYKPSPDAGSAVLLREE 269
Query: 941 YGNVGIAVVRIPSEFYYTEYEVKVQAINDVGPGP 974
+ V+R +T + ++ + G
Sbjct: 270 ECSP---VLREGLGSLHTRHHCQIPVPDPATHGQ 300
Score = 38.1 bits (87), Expect = 0.012
Identities = 21/187 (11%), Positives = 50/187 (26%), Gaps = 9/187 (4%)
Query: 795 TIQWTDGATNGRPITHYKIIARTNWNSTWFNVSEHVIGKEVDRYTGRKEASIENVLVPWS 854
T +W D R + +I R N + VS + ++P
Sbjct: 20 TCRWADTQDAQRL-VNVTLIRRVNEDL-LEPVSCDLSDDMPWSACPHPRCVPRRCVIPCQ 77
Query: 855 TYEFKVIAGNELGYGEPSSPSPQYNTPADKPYQAPSRIGGGGGKIGDLSISWEPLPREKQ 914
++ + P P + + ++W Q
Sbjct: 78 SFVVTDVDYFSFQPDRPLGTRLTVTLTQHVQPPEPRDLQISTDQ-DHFLLTWSVALGSPQ 136
Query: 915 ----NAPNIYYKIFWRKKNDTEFQSETLKEYGNVGIAVVRIPSEFYYTEYEVKVQAINDV 970
+ ++ +++ +++ D+ + L N A + + Y +V+
Sbjct: 137 SHWLSPGDLEFEVVYKRLQDSWEDAAIL--LSNTSQATLGPEHLMPSSTYVARVRTRLAP 194
Query: 971 GPGPESE 977
G
Sbjct: 195 GSRLSGR 201
Score = 32.3 bits (72), Expect = 0.74
Identities = 24/206 (11%), Positives = 56/206 (27%), Gaps = 32/206 (15%)
Query: 784 VQVVEVHKTSATIQWTDGATNGRPITHYKIIARTNWNSTWFNVSEHVIGKEVDRYTGRKE 843
++ + W + + + + ++ + V R
Sbjct: 224 LECFFDGAAVLSCSWEVR-KEVASSVSFGLFYKPSPDAGSAVLLREEECSPVLR------ 276
Query: 844 ASIENVLVPWSTYEFKVIAGNELGYG----------EPSSPSPQYNTPADKPYQAPSRIG 893
E + + + ++ + +G N P ++ G
Sbjct: 277 ---EGLGSLHTRHHCQIPVPDPATHGQYIVSVQPRRAEKHIKSSVNIQMAPPSLQVTKDG 333
Query: 894 GGGGKIGDLSISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETLKEYGNVGIAVVRIPS 953
S+ WE + + + ++I +RK T S+T + +P+
Sbjct: 334 D------SYSLRWET-MKMRYEHIDHTFEIQYRKDTATWKDSKTETLQNAH---SMALPA 383
Query: 954 EFYYTEYEVKVQAINDVG--PGPESE 977
T Y +V+ G SE
Sbjct: 384 LEPSTRYWARVRVRTSRTGYNGIWSE 409
>3cfw_A L-selectin; EGF, cell adhesion, EGF-like domain, glycoprotein,
membrane, sushi, transmembrane; HET: NAG MAN BMA; 2.20A
{Homo sapiens}
Length = 164
Score = 44.0 bits (104), Expect = 4e-05
Identities = 13/75 (17%), Positives = 25/75 (33%), Gaps = 5/75 (6%)
Query: 40 CYRFVKSPLKTRNDAKLNCKSLDSDLANVNDADEHGFIMYQLFWQDPQRRKWYFGGT-QQ 98
Y + + P A+ C+ +DL + + E ++ L + W G
Sbjct: 2 TYHYSEKP-MNWQRARRFCRDNYTDLVAIQNKAEIEYLEKTL--PFSRSYYW-IGIRKIG 57
Query: 99 SPNLWVNEDGTNLNE 113
WV + + E
Sbjct: 58 GIWTWVGTNKSLTEE 72
>1g1s_A P-selectin; selectin, lectin, EGF, sulphated, SLEX, immune system,
membr protein; HET: TYS SIA GAL NAG FUC NGA; 1.90A {Homo
sapiens} SCOP: d.169.1.1 g.3.11.1 PDB: 1g1r_A* 1g1q_A*
1fsb_A
Length = 162
Score = 43.6 bits (103), Expect = 5e-05
Identities = 13/75 (17%), Positives = 25/75 (33%), Gaps = 5/75 (6%)
Query: 40 CYRFVKSPLKTRNDAKLNCKSLDSDLANVNDADEHGFIMYQLFWQDPQRRKWYFGGT-QQ 98
Y + + N ++ C++ +DL + + +E ++ L W G
Sbjct: 2 TYHYSTKA-YSWNISRKYCQNRYTDLVAIQNKNEIDYLNKVL--PYYSSYYW-IGIRKNN 57
Query: 99 SPNLWVNEDGTNLNE 113
WV NE
Sbjct: 58 KTWTWVGTKKALTNE 72
>1olz_A Semaphorin 4D; developmental protein, CD100, beta-propeller, PSI
domain, IG-like domain, extracellular receptor,
neurogenesis; 2.0A {Homo sapiens} SCOP: b.1.1.4
b.69.12.1 g.16.2.1 PDB: 3ol2_A*
Length = 663
Score = 45.9 bits (107), Expect = 7e-05
Identities = 16/78 (20%), Positives = 32/78 (41%), Gaps = 4/78 (5%)
Query: 616 PKPKFVWKKDGN-IIGSGGRRKIFENGNLLISPVSRDDSGIYSCTATNVHGMDESKGRLI 674
+ WK + + + NLLI +S DSG+Y C + +++ +++
Sbjct: 560 NLARVFWKFQNGVLKAESPKYGLMGRKNLLIFNLSEGDSGVYQCLSEE-RVKNKTVFQVV 618
Query: 675 VLHGPSYYEQLPPKITIA 692
H ++ PK +A
Sbjct: 619 AKHVLE--VKVVPKPVVA 634
Score = 40.1 bits (92), Expect = 0.004
Identities = 16/146 (10%), Positives = 36/146 (24%), Gaps = 12/146 (8%)
Query: 367 SCNVQSKVSDTGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPEAPKAGDKVRLECVAFGY 426
+ + + S + F L+C
Sbjct: 505 TATCVALHQTESPSRGLIQEMSGDASVCPDKSKGSYRQHFFKHG----GTAELKCSQKS- 559
Query: 427 PVPSYNWTRRGSPLPRNA--YFENFNRILTIPNVKVEDQGEYICRA-----SNDRSALES 479
+ W + L + Y + L I N+ D G Y C + + + +
Sbjct: 560 NLARVFWKFQNGVLKAESPKYGLMGRKNLLIFNLSEGDSGVYQCLSEERVKNKTVFQVVA 619
Query: 480 SVTISIQAEPNFTIPLTDKHMDNQAD 505
+ ++ P + T + +
Sbjct: 620 KHVLEVKVVPKPVVAPTLSVVQTEGS 645
Score = 37.1 bits (84), Expect = 0.035
Identities = 20/108 (18%), Positives = 33/108 (30%), Gaps = 13/108 (12%)
Query: 694 HRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEITNASFADAG 753
+L+CS + W + LL I N S D+G
Sbjct: 548 GGTAELKCSQKSNL---ARVFWKFQNGVLKAESPKYGLMG----RKNLL-IFNLSEGDSG 599
Query: 754 EYECV-----VKSTVGKISTKTTVIVEGPPGLPGGVQVVEVHKTSATI 796
Y+C+ TV ++ K + V+ P + V + I
Sbjct: 600 VYQCLSEERVKNKTVFQVVAKHVLEVKVVPKPVVAPTLSVVQTEGSRI 647
Score = 36.3 bits (82), Expect = 0.060
Identities = 12/108 (11%), Positives = 25/108 (23%), Gaps = 10/108 (9%)
Query: 169 NDDRTYQYGMDIENPDKIPRGPYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEW 228
++ + + L C W
Sbjct: 508 CVALHQTESPSRGLIQEMSGDASVCPDKSKGSYRQHFFKHGGTAELKCSQKS-NLARVFW 566
Query: 229 FKEDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVEDRGSYHCKA 276
++ ++ S K + NL+I + + D G Y C +
Sbjct: 567 KFQN--------GVLKAESPKYGLMGRKNLLIFNLSE-GDSGVYQCLS 605
Score = 34.0 bits (76), Expect = 0.28
Identities = 11/52 (21%), Positives = 16/52 (30%), Gaps = 3/52 (5%)
Query: 317 CDPPTNYPGVNYYWARDYFPNFVEEDKRVFVSYDGALYFSALEQIDAGNYSC 368
C +N +W E K + L L + D+G Y C
Sbjct: 555 CSQKSNLA--RVFWKFQNGVLKAESPKYGLMGRKN-LLIFNLSEGDSGVYQC 603
>1h8u_A MBP, eosinophil granule major basic protein 1; lectin, eosinophil
granule protein, EMBP; 1.8A {Homo sapiens} SCOP:
d.169.1.1 PDB: 2brs_A*
Length = 117
Score = 42.0 bits (99), Expect = 8e-05
Identities = 15/77 (19%), Positives = 29/77 (37%), Gaps = 7/77 (9%)
Query: 40 CYRFVKSPLKTRNDAKLNCKSLDS-DLANVNDADEHGFIMYQLFWQDPQRRKWYFGGT-- 96
Y V+S +T + A C+ +L ++++ + + I Q + W GG
Sbjct: 3 RYLLVRSL-QTFSQAWFTCRRCYRGNLVSIHNFNINYRI-QCSVSALNQGQVW-IGGRIT 59
Query: 97 -QQSPNLWVNEDGTNLN 112
+ DG+ N
Sbjct: 60 GSGRCRRFQWVDGSRWN 76
>1ow0_A IG alpha-1 chain C region; IGA1, fcari, CD89, antibody,
immunoglobulin-LIK immune system; HET: NAG FUL BMA GAL
SIA FUC MAN NDG; 3.10A {Homo sapiens} SCOP: b.1.1.2
b.1.1.2 PDB: 2qej_A*
Length = 214
Score = 43.3 bits (102), Expect = 1e-04
Identities = 25/136 (18%), Positives = 38/136 (27%), Gaps = 16/136 (11%)
Query: 414 GDKVRLECVAFGYPVPS---YNWTRRGSPLPRNAYFENFN-------RILTIPNVKVEDQ 463
G + L C G S + WT E +L
Sbjct: 19 GSEANLTCTLTGLRDASGVTFTWTPSSGKSAVQGPPERDLCGCYSVSSVLPGCAEPWNHG 78
Query: 464 GEYICRASNDRSALESSVTISIQAEPN----FTIPLTDKHMDNQADLTWTCEA--FGVPD 517
+ C A+ S + T+S +P + + +T TC A F D
Sbjct: 79 KTFTCTAAYPESKTPLTATLSKSGNTFRPEVHLLPPPSEELALNELVTLTCLARGFSPKD 138
Query: 518 VTYSWFRNGELLNSET 533
V W + + L E
Sbjct: 139 VLVRWLQGSQELPREK 154
Score = 33.7 bits (77), Expect = 0.18
Identities = 24/139 (17%), Positives = 37/139 (26%), Gaps = 25/139 (17%)
Query: 509 TCEAFGV---PDVTYSWFRNGELLNSETLPLEDQDRYFIQDNVLTIRYLNPERDPAMYQC 565
TC G+ VT++W + + P D + +VL + C
Sbjct: 25 TCTLTGLRDASGVTFTWTPSSGKSAVQGPPERDLCGCYSVSSVLPGCAEPWN-HGKTFTC 83
Query: 566 RAKNQLKTRYSSAQLRVLTLKPSFKKR-------PLESETYAGEGGNVTIFC-----NPE 613
A S L K R P E E VT+ C +P+
Sbjct: 84 TAAYP----ESKTPLTATLSKSGNTFRPEVHLLPPPSEELALNE--LVTLTCLARGFSPK 137
Query: 614 AAPKPKFVWKKDGNIIGSG 632
W + +
Sbjct: 138 DV---LVRWLQGSQELPRE 153
Score = 29.4 bits (66), Expect = 4.2
Identities = 12/92 (13%), Positives = 23/92 (25%), Gaps = 8/92 (8%)
Query: 192 FIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFK-EDYVQDRLVANLIDPLSDKR 250
+ +P L L+C G + S F V +
Sbjct: 7 SLHRPALEDLLLGSE-----ANLTCTLTGLRDASGVTFTWTPSSGKSAVQGPPERDLCGC 61
Query: 251 FTLSGGNLIINDPRQVEDRGSYHCKASNKFGS 282
+++S L ++ C A+
Sbjct: 62 YSVS-SVLPGC-AEPWNHGKTFTCTAAYPESK 91
>3bpo_C Interleukin-13 receptor alpha-1 chain; IL4, IL13, IL4R, IL13R,
cytokine, glycoprotein, IM response, membrane,
phosphoprotein, secreted; HET: NAG; 3.00A {Homo sapiens}
PDB: 3bpn_C*
Length = 314
Score = 43.3 bits (101), Expect = 2e-04
Identities = 30/213 (14%), Positives = 59/213 (27%), Gaps = 19/213 (8%)
Query: 764 GKISTKTTVIVEG-PPGLPGGVQVVEVHKTSATIQWTDGATNGRPITHYKIIARTNWNST 822
+ K EG P +Q + + + W G N P T+Y +
Sbjct: 83 SILVEKCISPPEGDPESAVTELQCIWHNLSYMKCSWLPG-RNTSPDTNYTLYYWHRSLEK 141
Query: 823 WFNVSEHVIGKEVDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPSPQYNTPA 882
+Y G + + + +++ + G S + T
Sbjct: 142 IHQCENIF---REGQYFGCSFDLTKVKDSSFEQHSVQIMVKDNAGKI-KPSFNIVPLTSR 197
Query: 883 DKPYQAPSRIGGGGGKIGDLSISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETLKEYG 942
KP P I DL + WE + + ++Y++ ++E
Sbjct: 198 VKP--DPPHIKNLSFHNDDLYVQWEN--PQNFISRCLFYEVEVNNSQTETHNVFYVQEAK 253
Query: 943 NVGIAVVR---------IPSEFYYTEYEVKVQA 966
R +P T V+++
Sbjct: 254 CENPEFERNVENTSCFMVPGVLPDTLNTVRIRV 286
Score = 30.6 bits (68), Expect = 2.7
Identities = 9/106 (8%), Positives = 29/106 (27%), Gaps = 10/106 (9%)
Query: 759 VKSTVGKISTKTTVIVEGPPGLPGGVQVVEVHKTSATIQWTD-GATNGRPITH---YKII 814
+K + + + V + P + H +QW + R + +
Sbjct: 185 IKPSFNIVPLTSRVKPDPPHIK-----NLSFHNDDLYVQWENPQNFISRCLFYEVEVNNS 239
Query: 815 ARTNWNSTWFNVSEHVIGKEVDRYTGRKEASIENVLVPWSTYEFKV 860
N + ++ + + ++P + ++
Sbjct: 240 QTETHNVFYVQEAKCENPEFERNVENTSCFMVPG-VLPDTLNTVRI 284
>3fd4_A Glycoprotein GP42; C type lectin, virus entry, membrane fusion,
HOST-virus interaction, lectin, membrane, transmembrane,
viral protein; 2.40A {Human herpesvirus 4} PDB: 1kg0_C
Length = 191
Score = 42.2 bits (98), Expect = 3e-04
Identities = 12/84 (14%), Positives = 23/84 (27%), Gaps = 4/84 (4%)
Query: 29 CPQHWVQYRDSCYRFVKSPLKTRNDAKLNCKSLDSDLANVNDADEHGFIMYQLFWQDPQR 88
++ Y+ C+ F K T N C L + ++ +
Sbjct: 72 TREYTFSYKGCCFYFTKK-KHTWNGCFQACAELYPCTYFYGPTPDILPVVTR---NLNAI 127
Query: 89 RKWYFGGTQQSPNLWVNEDGTNLN 112
+ G + W + DG
Sbjct: 128 ESLWVGVYRVGEGNWTSLDGGTFK 151
>1iar_B Protein (interleukin-4 receptor alpha chain); cytokine
receptor,interleukin-4, cytokine/receptor complex; 2.30A
{Homo sapiens} SCOP: b.1.2.1 b.1.2.1 PDB: 3bpl_B*
3bpn_B* 3bpo_B*
Length = 207
Score = 42.3 bits (99), Expect = 3e-04
Identities = 24/130 (18%), Positives = 43/130 (33%), Gaps = 10/130 (7%)
Query: 850 LVPWSTYEFKVIAGNELGYGEPSSPSPQYNTPADKPYQAPSRIGGGGGKIGDLSISWE-P 908
+V Y + AG +L + PS KP +AP + L ++W P
Sbjct: 68 VVSADNYTLDLWAGQQLLWKGSFKPSEHV-----KP-RAPGNLTVHTNVSDTLLLTWSNP 121
Query: 909 LPREKQNAPNIYYKIFWRKKNDTEFQSETLKEYGNVGIAVVRIPSEFY-YTEYEVKVQAI 967
P + ++ Y + +ND + + ++ S Y +V+A
Sbjct: 122 YPPDNYLYNHLTYAVNIWSENDPA--DFRIYNVTYLEPSLRIAASTLKSGISYRARVRAW 179
Query: 968 NDVGPGPESE 977
SE
Sbjct: 180 AQAYNTTWSE 189
Score = 33.9 bits (77), Expect = 0.17
Identities = 16/112 (14%), Positives = 37/112 (33%), Gaps = 12/112 (10%)
Query: 781 PGGVQVVEVHKTSATIQWTDGATNGRPITH---YKIIARTNWNSTWFNVSEHVIGKEVDR 837
PG + V + + W++ + + Y + + + F + + R
Sbjct: 101 PGNLTVHTNVSDTLLLTWSNPYPPDNYLYNHLTYAVNIWSENDPADFRIYNVTYLEPSLR 160
Query: 838 YTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPS--SPSPQYNTPADKPYQ 887
L +Y +V A + S SPS +++ +P++
Sbjct: 161 IAAST-------LKSGISYRARVRAWAQAYNTTWSEWSPSTKWHNSYREPFE 205
>2vol_A Murine IGG FC; FC, zinc, B30.2, nucleus, pryspry, cytoplasm, mouse
IGG, zinc-finger, DNA-binding, RNA-binding, tripartite
motif (TRIM) protein; HET: NAG MAN GAL FUC; 1.95A {Mus
musculus} PDB: 3hkf_A 1i1a_C* 1cqk_A
Length = 207
Score = 42.2 bits (99), Expect = 3e-04
Identities = 27/170 (15%), Positives = 47/170 (27%), Gaps = 21/170 (12%)
Query: 403 FPKTFPEAPKAGDKVRLECVAFGYPVPSYN----WTRRGSPLPRNAYFENFNR------- 451
FP + ++ CV W + +
Sbjct: 7 FPPKPKDVLTITLTPKVTCVVVDISKDDPEVQFSWFVDDVEVHTAQTKPREEQFNSTFRS 66
Query: 452 --ILTIPNVKVEDQGEYICRASNDRSALESSVTISIQ----AEPNFTIPLTDKHMDNQAD 505
L I + + E+ CR ++ TIS P K +
Sbjct: 67 VSELPIMHQDWLNGKEFKCRVNSAAFPAPIEKTISKTKGRPKAPQVYTLPPPKEQMAKDK 126
Query: 506 LTWTCEAFGV--PDVTYSWFRNGELLNSE--TLPLEDQDRYFIQDNVLTI 551
++ TC D+T W NG+ + T P+ D D + + L +
Sbjct: 127 VSLTCMITDFFPEDITVEWESNGQPAENYKNTQPIMDTDGSYFVYSKLNV 176
>1g1t_A E-selectin; EGF, adhesion molecule, SLEX, immune system, membrane
protein; HET: SIA GAL MAG FUC; 1.50A {Homo sapiens}
SCOP: d.169.1.1 g.3.11.1 PDB: 1esl_A
Length = 157
Score = 41.3 bits (97), Expect = 3e-04
Identities = 12/71 (16%), Positives = 25/71 (35%), Gaps = 11/71 (15%)
Query: 40 CYRFVKSPLKTRNDAKLNCKSLDSDLANVNDADEHGFIMYQL------FW---QDPQRRK 90
Y T ++A C+ + L + + +E ++ L +W +
Sbjct: 2 SYNTSTEA-MTYDEASAYCQQRYTHLVAIQNKEEIEYLNSILSYSPSYYWIGIRK-VNNV 59
Query: 91 WYFGGTQQSPN 101
W + GTQ+
Sbjct: 60 WVWVGTQKPLT 70
>2vsd_A CHIR AB1; immune system receptor, FC receptor; HET: NAG NDG MAN;
1.82A {Gallus gallus}
Length = 105
Score = 39.3 bits (92), Expect = 5e-04
Identities = 11/59 (18%), Positives = 22/59 (37%), Gaps = 5/59 (8%)
Query: 602 EGGNVTIFCNPEAAPKP--KFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSC 658
G VT+ C+ P+ +G + + K + + + +D+G Y C
Sbjct: 18 LGDTVTLRCH---LPRMAAWVQLWLNGTLRFDKEKDKEQDAAEFSFAVTNLEDAGTYQC 73
Score = 30.0 bits (68), Expect = 1.0
Identities = 14/68 (20%), Positives = 18/68 (26%), Gaps = 2/68 (2%)
Query: 413 AGDKVRLECVAFGYPVPSYNWTRRGSP-LPRNAYFENFNRILTIPNVKVEDQGEYICRAS 471
GD V L C G+ + E + +ED G Y CR
Sbjct: 18 LGDTVTLRCHL-PRMAAWVQLWLNGTLRFDKEKDKEQDAAEFSFAVTNLEDAGTYQCRYQ 76
Query: 472 NDRSALES 479
S
Sbjct: 77 VSEPLWTS 84
Score = 28.1 bits (63), Expect = 5.0
Identities = 16/82 (19%), Positives = 24/82 (29%), Gaps = 16/82 (19%)
Query: 683 EQLP-------PKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNI 735
+QLP P ++ + LRC NG L + +
Sbjct: 1 QQLPQPSLSLHPSQGVSLGDTVTLRCHLPRM---AAWVQLWLNG------TLRFDKEKDK 51
Query: 736 NIDGGLLEITNASFADAGEYEC 757
D + DAG Y+C
Sbjct: 52 EQDAAEFSFAVTNLEDAGTYQC 73
>1k85_A Chitinase A1; fibronectin type III domain, chitin binding domain,
carbohydrase, horizontal gene transfer, hydrolase; NMR
{Bacillus circulans} SCOP: b.1.2.1
Length = 88
Score = 38.8 bits (91), Expect = 6e-04
Identities = 19/107 (17%), Positives = 32/107 (29%), Gaps = 32/107 (29%)
Query: 777 PPGLPGGVQVVEVHKTSATIQWTDGATNGRPITHYKI------IARTNWNSTWFNVSEHV 830
P P + +S T+ WT +T+ +T Y + T +
Sbjct: 3 APTAPTNLASTAQTTSSITLSWT-ASTDNVGVTGYDVYNGTALATTV--TGTTATI---- 55
Query: 831 IGKEVDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPSPQ 877
+G L ++Y F V A + G S+ S
Sbjct: 56 --------SG---------LAADTSYTFTVKAKD--AAGNVSAASNA 83
>4esk_A LAIR-1, mlair1, leukocyte-associated immunoglobulin-like receptor;
IG-like domain, domain swapping, collagen receptor,
structural genomics; 1.76A {Mus musculus}
Length = 102
Score = 39.3 bits (92), Expect = 6e-04
Identities = 14/58 (24%), Positives = 21/58 (36%), Gaps = 2/58 (3%)
Query: 603 GGNVTIFC--NPEAAPKPKFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSC 658
G VT+ C + + +KDG+ I PV+ +G YSC
Sbjct: 23 GTFVTVVCSYSDKHDLYNMVRLEKDGSTFMEKSTEPYKTEDEFEIGPVNETITGHYSC 80
>2e6q_A Obscurin-like protein 1; IG-like domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 112
Score = 39.6 bits (92), Expect = 7e-04
Identities = 11/76 (14%), Positives = 20/76 (26%), Gaps = 10/76 (13%)
Query: 715 WTHNGVRIGNMDLNELETPN-----INIDGGL--LEITNASFADAGEYECVVKSTVGKIS 767
W NG + + + P I G L + D+G +
Sbjct: 40 WFLNGEELKSNEPEGQVEPGALRYRIEQKGLQHRLILHAVKHQDSGALVGFS---CPGVQ 96
Query: 768 TKTTVIVEGPPGLPGG 783
+ ++ G G
Sbjct: 97 DSAALTIQESSGPSSG 112
Score = 37.7 bits (87), Expect = 0.003
Identities = 20/108 (18%), Positives = 34/108 (31%), Gaps = 15/108 (13%)
Query: 484 SIQAEPNFTI--PLTDKHMDNQADLTWTCEAFGVPDVTYSWFRNGELLNSE---TLPLED 538
S + + L D + + D ++ + + T WF NGE L S
Sbjct: 2 SSGSSGTARLVAGLEDVQVYDGEDAVFSLDLSTIIQGT--WFLNGEELKSNEPEGQVEPG 59
Query: 539 QDRYFIQDN----VLTIRYLNPERDPAMYQCRAKNQLKTRYSSAQLRV 582
RY I+ L + + + A+ SA L +
Sbjct: 60 ALRYRIEQKGLQHRLILHAVKHQDSGALVGFSCPGV----QDSAALTI 103
Score = 31.5 bits (71), Expect = 0.40
Identities = 13/93 (13%), Positives = 24/93 (25%), Gaps = 21/93 (22%)
Query: 412 KAGDKVRLEC-VAFGYPVPSYNWTRRGSPLPRNAYFENFNR--------------ILTIP 456
G+ ++ W G L N L +
Sbjct: 21 YDGEDAVFSLDLSTIIQG---TWFLNGEELKSNEPEGQVEPGALRYRIEQKGLQHRLILH 77
Query: 457 NVKVEDQGEYICRASNDRSALESSVTISIQAEP 489
VK +D G + + ++ S ++IQ
Sbjct: 78 AVKHQDSGALVGFSCPG---VQDSAALTIQESS 107
>2aw2_A B and T lymphocyte attenuator; IGI domain, IGG domain, TNFRSF,
protein-protein complex, IMM system; HET: NAG FUL; 2.80A
{Homo sapiens} SCOP: b.1.1.1
Length = 120
Score = 39.4 bits (91), Expect = 7e-04
Identities = 24/84 (28%), Positives = 34/84 (40%), Gaps = 11/84 (13%)
Query: 413 AGDKVRLEC-VAFGYPVPSYNWTR----RGSPLP--RNAYFENFNR---ILTIPNVKVED 462
AGD LEC V + P W + L + ++ E N IL V D
Sbjct: 25 AGDPFELECPVKYCANRPHVTWCKLNGTTCVKLEDRQTSWKEEKNISFFILHFEPVLPND 84
Query: 463 QGEYICRASNDRSALES-SVTISI 485
G Y C A+ + +ES S T+ +
Sbjct: 85 NGSYRCSANFQSNLIESHSTTLYV 108
Score = 32.9 bits (74), Expect = 0.13
Identities = 15/68 (22%), Positives = 25/68 (36%), Gaps = 8/68 (11%)
Query: 615 APKPKFVWKK--DGNIIGSGGRRKIFENGN------LLISPVSRDDSGIYSCTATNVHGM 666
A +P W K + R+ ++ L PV +D+G Y C+A +
Sbjct: 39 ANRPHVTWCKLNGTTCVKLEDRQTSWKEEKNISFFILHFEPVLPNDNGSYRCSANFQSNL 98
Query: 667 DESKGRLI 674
ES +
Sbjct: 99 IESHSTTL 106
Score = 30.6 bits (68), Expect = 1.0
Identities = 11/31 (35%), Positives = 14/31 (45%)
Query: 262 DPRQVEDRGSYHCKASNKFGSIISESVQLAF 292
+P D GSY C A+ + I S S L
Sbjct: 78 EPVLPNDNGSYRCSANFQSNLIESHSTTLYV 108
>3lqm_A Interleukin-10 receptor subunit beta; IL-10R2, common chain,
cytokine, IL-10, IL-22, IL- 28, IL-29, disulfide bond,
glycoprotein, membrane; 2.14A {Homo sapiens}
Length = 201
Score = 40.9 bits (95), Expect = 7e-04
Identities = 31/210 (14%), Positives = 61/210 (29%), Gaps = 38/210 (18%)
Query: 781 PGGVQVVEVHKTSATIQWTDGATNGRPITHYKIIARTNWNSTWFNVSEHVIGKEVDRYTG 840
P V++ V+ +QW A +T + + ++ T
Sbjct: 5 PENVRMNSVN-FKNILQWESPAFAKGQLT-FTAQYLSYRI-----------FQDKCMQTT 51
Query: 841 RKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPSPQYNTPADKPYQAPSRIGGGGGKIG 900
E + L + + +V A E S +P D P +
Sbjct: 52 LTECDFSS-LSKYGDHTLRVRAEFA---DEHSDWVQITFSPVDDTIIGPPGMQVEVLA-D 106
Query: 901 DLSISWEPLPREKQNAPNI----------YYKIFWRKKNDTEFQSETLKEYGNVGIAVVR 950
L + + P+ + Y +W++ D +FQ ++
Sbjct: 107 CLHMRFLA-PKIENEYETWTMKNVYNSWTYNVQYWKQGTDEKFQITPQYDF-------EV 158
Query: 951 IPSEFYYTEYEVKVQAINDV--GPGPESEV 978
+ + +T Y V+V+ G SE
Sbjct: 159 LRNLEPWTTYCVQVRGFLPDRNKAGEWSEP 188
>4ety_A LAIR-1, mlair1, leukocyte-associated immunoglobulin-like receptor;
IG-like domain, extra celluar domain, domain swappin
nysgrc, structural genomics; 1.90A {Mus musculus}
Length = 118
Score = 39.3 bits (92), Expect = 8e-04
Identities = 18/91 (19%), Positives = 30/91 (32%), Gaps = 3/91 (3%)
Query: 603 GGNVTIFC--NPEAAPKPKFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTA 660
G VT+ C + + +KDG+ I PV+ +G YSC
Sbjct: 23 GTFVTVVCSYSDKHDLYNMVRLEKDGSTFMEKSTEPYKTEDEFEIGPVNETITGHYSCIY 82
Query: 661 TNVHGMDESKGRL-IVLHGPSYYEQLPPKIT 690
+ E L + + + + P T
Sbjct: 83 SKGITWSERSKTLELKVIKENVIQTPAPGPT 113
>1zvo_C Myeloma immunoglobulin D delta; immunoglobulin fold, antibody,
immune system; NMR {Homo sapiens}
Length = 512
Score = 41.9 bits (98), Expect = 0.001
Identities = 30/210 (14%), Positives = 52/210 (24%), Gaps = 28/210 (13%)
Query: 364 GNYSCNVQSKVSDTGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPEAPKAGDKVRLECVA 423
G + K R L P + DK C
Sbjct: 268 GEEKKKEKEKEEQEERETKTPECPSHTQPLGVYLLTPA------VQDLWLRDKATFTCFV 321
Query: 424 FGYPVPSYN--WTRRGSPLPRNAY----FENFNR------ILTIPNVKVEDQGEYICRAS 471
G + + W G + N LT+P C +
Sbjct: 322 VGSDLKDAHLTWEVAGKVPTGGVEEGLLERHSNGSQSQHSRLTLPRSLWNAGTSVTCTLN 381
Query: 472 NDRSALESSVTIS---IQAEPNFTIPLTDKHMDNQADLTWTCEA--FGVPDVTYSWFRNG 526
+ + + + QA ++ L +A CE F P++ W +
Sbjct: 382 HPSLPPQRLMALREPAAQAPVKLSLNLLASSDPPEAASWLLCEVSGFSPPNILLMWLEDQ 441
Query: 527 ELLNSE-----TLPLEDQDRYFIQDNVLTI 551
+N+ P + F +VL +
Sbjct: 442 REVNTSGFAPARPPPQPGSTTFWAWSVLRV 471
Score = 37.3 bits (86), Expect = 0.027
Identities = 41/310 (13%), Positives = 77/310 (24%), Gaps = 60/310 (19%)
Query: 359 EQIDAGNYSCNVQSKVSDTGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPEAPKAGDKVR 418
+Q G Y C VQ S + + +P + P+A +
Sbjct: 204 QQWRQGEYKCVVQHTASKSKKEIFRWPESPKAQA-----------SSVPTAQPQAEGSLA 252
Query: 419 LECVAFGYPVPSYNWTRRGSPLPRNAYFENFNRILTIPNVKVEDQGEYICRASNDRSALE 478
A P + N R G K +++ E R +
Sbjct: 253 KATTA---PATTRNTGRGGE-----------------EKKKEKEKEEQEERETKTPECPS 292
Query: 479 SSVTISIQAEPNFTIPLTDKHMDNQADLTWTCEAFGV--PDVTYSWFRNG--ELLNSETL 534
+ + + + + + + + T+TC G D +W G E
Sbjct: 293 HTQPLGV-----YLLTPAVQDLWLRDKATFTCFVVGSDLKDAHLTWEVAGKVPTGGVEEG 347
Query: 535 PLEDQ-DRYFIQDNVLTIRYLNPERDPAMYQCRAKNQ----LKTRYSSAQLRVLTLKPSF 589
LE + Q + LT+ C + + +K S
Sbjct: 348 LLERHSNGSQSQHSRLTLPRSLWNAG-TSVTCTLNHPSLPPQRLMALREPAAQAPVKLSL 406
Query: 590 KKRPLESETYAGEGGNVTIFCNPEA-APKPKFV-WKKDGNIIGSGGRRKIFENGNLLISP 647
+ C +P + W +D + + G P
Sbjct: 407 NLLASSDPP----EAASWLLCEVSGFSPPNILLMWLEDQREVNTSGFAPAR--------P 454
Query: 648 VSRDDSGIYS 657
+ S +
Sbjct: 455 PPQPGSTTFW 464
>3udw_C Poliovirus receptor; PVR tigit IGSF signal transduction immunology,
IGSF, cell SU receptor signalling, glycosylation,
membrane protein; HET: NAG; 2.90A {Homo sapiens}
Length = 118
Score = 38.3 bits (89), Expect = 0.002
Identities = 20/109 (18%), Positives = 32/109 (29%), Gaps = 27/109 (24%)
Query: 595 ESETYAGEGGNVTIFC-----NPEAAPKPKFVWKKD-------------GNIIGSGGRRK 636
++ G +VT+ C N E + W + G R +
Sbjct: 7 PTQVPGFLGDSVTLPCYLQVPNMEVTHVSQLTWARHGESGSMAVFHQTQGPSYSESKRLE 66
Query: 637 I--------FENGNLLISPVSRDDSGIYSC-TATNVHGMDESKGRLIVL 676
N +L + + +D G Y+C T G L VL
Sbjct: 67 FVAARLGAELRNASLRMFGLRVEDEGNYTCLFVTFPQGSRSVDIWLRVL 115
Score = 37.5 bits (87), Expect = 0.003
Identities = 10/38 (26%), Positives = 12/38 (31%), Gaps = 1/38 (2%)
Query: 742 LEITNASFADAGEYEC-VVKSTVGKISTKTTVIVEGPP 778
L + D G Y C V G S + V P
Sbjct: 81 LRMFGLRVEDEGNYTCLFVTFPQGSRSVDIWLRVLAKP 118
Score = 34.8 bits (80), Expect = 0.027
Identities = 17/104 (16%), Positives = 30/104 (28%), Gaps = 28/104 (26%)
Query: 414 GDKVRLECVAFGYPVPSYN-----WTRRGSPLPRNAYFENFNRI---------------- 452
GD V L C + + W R G + +
Sbjct: 15 GDSVTLPCYLQVPNMEVTHVSQLTWARHGESGSMAVFHQTQGPSYSESKRLEFVAARLGA 74
Query: 453 ------LTIPNVKVEDQGEYICRASNDRS-ALESSVTISIQAEP 489
L + ++VED+G Y C + + + + A+P
Sbjct: 75 ELRNASLRMFGLRVEDEGNYTCLFVTFPQGSRSVDIWLRVLAKP 118
Score = 29.4 bits (66), Expect = 2.5
Identities = 19/97 (19%), Positives = 27/97 (27%), Gaps = 18/97 (18%)
Query: 211 DITLSCY-----AGGYPNPSYEWFKEDYVQDRLVANLIDPLS---DKRF---------TL 253
+TL CY W + V + S KR L
Sbjct: 17 SVTLPCYLQVPNMEVTHVSQLTWARHGESGSMAVFHQTQGPSYSESKRLEFVAARLGAEL 76
Query: 254 SGGNLIINDPRQVEDRGSYHCKASNKFGSIISESVQL 290
+L + +VED G+Y C S + L
Sbjct: 77 RNASLRMFGL-RVEDEGNYTCLFVTFPQGSRSVDIWL 112
>1iga_A IGA1; immunoglobulin; NMR {Homo sapiens} PDB: 2esg_A 2qtj_A 3chn_A
1r70_B 3cm9_A
Length = 475
Score = 39.9 bits (93), Expect = 0.003
Identities = 66/458 (14%), Positives = 121/458 (26%), Gaps = 83/458 (18%)
Query: 408 PEAPKAGDKVRLECVAFGYPVPSY--NWTRRG-----------SPLPRNAYF-ENF-NRI 452
E K G V++ C A GY SY +W R+ S N + + F R+
Sbjct: 10 AEVKKPGASVKVSCKASGYSFTSYGLHWVRQAPGQRLEWMGWISAGTGNTKYSQKFRGRV 69
Query: 453 ------------LTIPNVKVEDQGEYIC---RASNDRSALE-----SSVTISIQAEPN-F 491
+ + +++ ED Y C +S + + VT+S + +
Sbjct: 70 TFTRDTSATTAYMGLSSLRPEDTAVYYCARDPYGGGKSEFDYWGQGTLVTVSSASPTSPK 129
Query: 492 TIPLTDKHMDNQADLTWTCEAFGV-PD--VTYSWFRNGELLNSETLP--LEDQDRYFIQD 546
PL+ ++ C G P ++ +W +G+ + + P + +
Sbjct: 130 VFPLSLCSTQPDGNVVIACLVQGFFPQEPLSVTWSESGQGVTARNFPPSQDASGDLYTTS 189
Query: 547 NVLTIRYLNPERDPAMYQCRAKNQLKTRYSSAQLRVLTLKPSFKKRPLESETYAGEGG-- 604
+ LT+ C K+ + P
Sbjct: 190 SQLTLPATQCL-AGKSVTCHVKHYTNPSQDVTVPCPVPSTPPTPSPSTPPTPSPSCCHPR 248
Query: 605 ---------------NVTIFC---NPEAAPKPKFVWKKDGNIIGSGGRRKIFENGN---- 642
+ C A F W G + G
Sbjct: 249 LSLHRPALEDLLLGSEANLTCTLTGLRDASGVTFTWTPSSGKSAVQGPPERDLCGCYSVS 308
Query: 643 --LLISPVSRDDSGIYSCTATNVHG---MDESKGRLIVLHGPSYYEQLPPKITIAAHRNL 697
L + ++CTA + + + P + PP +A + +
Sbjct: 309 SVLPGCAEPWNHGKTFTCTAAYPESKTPLTATLSKSGNTFRPEVHLLPPPSEELALNELV 368
Query: 698 QLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDG---------GLLEITNAS 748
L C A DV W + L + +L +
Sbjct: 369 TLTCLARGFSPKDVLVRWLQGSQEL--PREKYLTWASRQEPSQGTTTFAVTSILRVAAED 426
Query: 749 FADAGEYECVVKSTVGKISTKTTVIVEGPPGLPGGVQV 786
+ + C+V T ++ G P V V
Sbjct: 427 WKKGDTFSCMVGHE-ALPLAFTQKTIDRLAGKPTHVNV 463
Score = 39.5 bits (92), Expect = 0.005
Identities = 41/285 (14%), Positives = 78/285 (27%), Gaps = 62/285 (21%)
Query: 400 PNNFPKTFPEAP---KAGDKVRLECVAFGY----PVPSYNWTRRGSPLPRNAYFENFNR- 451
PK FP + + V + C+ G+ P+ S W+ G + + + +
Sbjct: 124 SPTSPKVFPLSLCSTQPDGNVVIACLVQGFFPQEPL-SVTWSESGQGVTARNFPPSQDAS 182
Query: 452 --------ILTIPNVKVEDQGEYICRASNDRSALESSVTISIQAEPN------------- 490
LT+P + C + + VT+
Sbjct: 183 GDLYTTSSQLTLPATQCLAGKSVTCHVKHY-TNPSQDVTVPCPVPSTPPTPSPSTPPTPS 241
Query: 491 --------FTIPLTDKHMDNQADLTWTCEAFGV---PDVTYSWFRNGELLNSETLPLEDQ 539
+ + ++ TC G+ VT++W + + P D
Sbjct: 242 PSCCHPRLSLHRPALEDLLLGSEANLTCTLTGLRDASGVTFTWTPSSGKSAVQGPPERDL 301
Query: 540 DRYFIQDNVLTIRYLNPERDPAMYQCRAKNQ---------LKTRYSSAQLRVLTLKPSFK 590
+ +VL + C A L ++ + V L P +
Sbjct: 302 CGCYSVSSVLPGCAEPWNHG-KTFTCTAAYPESKTPLTATLSKSGNTFRPEVHLLPPPSE 360
Query: 591 KRPLESETYAGEGGNVTIFCN-PEAAPKPKFV-WKKDGNIIGSGG 633
+ L VT+ C +PK V W + +
Sbjct: 361 ELALNE--------LVTLTCLARGFSPKDVLVRWLQGSQELPREK 397
Score = 31.8 bits (72), Expect = 1.1
Identities = 30/172 (17%), Positives = 48/172 (27%), Gaps = 37/172 (21%)
Query: 324 PGVNYYWARDYFPNFV----EEDKRVFVSYDGALYFSALEQIDAGNYSCNVQSKVSDTGR 379
GV + W + V E D S L A ++C
Sbjct: 278 SGVTFTWTPSSGKSAVQGPPERDLCGCYSVSSVLPGCAEPWNHGKTFTCTAAYP----ES 333
Query: 380 NGPFFPLKVFPHSNFQQLKFPNNFPKTFPEAPKAGD-----KVRLECVAFGYPVPSYN-- 432
P + F+ P+ P + + V L C+A G+
Sbjct: 334 KTPLTATLSKSGNTFR--------PEVHLLPPPSEELALNELVTLTCLARGFSPKDVLVR 385
Query: 433 WTRRGSPLPRNAYFENFNRILTIPNVKVEDQGEYICRASNDRSALESSVTIS 484
W + LPR Y LT + + QG A+ S + ++
Sbjct: 386 WLQGSQELPREKY-------LTWASRQEPSQG-------TTTFAVTSILRVA 423
>1xau_A B- and T-lymphocyte attenuator; IG domain, beta sandwich,
structural genomics, PSI, protein structure initiative;
1.80A {Mus musculus} SCOP: b.1.1.4
Length = 122
Score = 37.2 bits (85), Expect = 0.005
Identities = 19/87 (21%), Positives = 35/87 (40%), Gaps = 14/87 (16%)
Query: 413 AGDKVRLEC-VAFGYPVPSYNWTR---------RGSPLPRNAYFENFNR---ILTIPNVK 459
G+ ++EC V + P+ W + P ++ EN + +L +
Sbjct: 28 TGELFKIECPVKYCVHRPNVTWCKHNGTIWVPLEVGPQLYTSWEENRSVPVFVLHFKPIH 87
Query: 460 VEDQGEYICRASNDRSALES-SVTISI 485
+ D G Y C + + + S SVTI +
Sbjct: 88 LSDNGSYSCSTNFNSQVINSHSVTIHV 114
Score = 29.5 bits (65), Expect = 2.4
Identities = 15/71 (21%), Positives = 23/71 (32%), Gaps = 11/71 (15%)
Query: 615 APKPKFVWKK----DGNIIGSGGRRKIF--ENGN-----LLISPVSRDDSGIYSCTATNV 663
+P W K + G + EN + L P+ D+G YSC+
Sbjct: 42 VHRPNVTWCKHNGTIWVPLEVGPQLYTSWEENRSVPVFVLHFKPIHLSDNGSYSCSTNFN 101
Query: 664 HGMDESKGRLI 674
+ S I
Sbjct: 102 SQVINSHSVTI 112
>4acp_A IG gamma-1 chain C region; immune system, antibody, kifunensine;
HET: NAG; 2.49A {Homo sapiens} PDB: 2j6e_A*
Length = 240
Score = 38.4 bits (89), Expect = 0.007
Identities = 48/211 (22%), Positives = 68/211 (32%), Gaps = 37/211 (17%)
Query: 364 GNYSCNVQSKVSDTGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPEAPKAGDKVRLECV- 422
G SC+ VF FP + + CV
Sbjct: 1 GTKSCDKTHTCPPCPAPELLGGPSVFL------------FPPKPKDTLMISRTPEVTCVV 48
Query: 423 ---AFGYPVPSYNWTRRGSPL------PRNAYFENFNRI---LTIPNVKVEDQGEYICRA 470
+ P +NW G + PR + + R+ LT+ + + EY C+
Sbjct: 49 VDVSHEDPEVKFNWYVDGVEVHNAKTKPREEQYNSTYRVVSVLTVLHQDWLNGKEYKCKV 108
Query: 471 SNDRSALESSVTISIQ----AEPNFTI--PLTDKHMDNQADLTWTCEA--FGVPDVTYSW 522
SN TIS EP P D+ NQ L TC F D+ W
Sbjct: 109 SNKALPAPIEKTISKAKGQPREPQVYTLPPSRDELTKNQVSL--TCLVKGFYPSDIAVEW 166
Query: 523 FRNGELLNSE--TLPLEDQDRYFIQDNVLTI 551
NG+ N+ T P+ D D F + LT+
Sbjct: 167 ESNGQPENNYKATPPVLDSDGSFFLYSKLTV 197
Score = 34.2 bits (78), Expect = 0.13
Identities = 35/224 (15%), Positives = 80/224 (35%), Gaps = 37/224 (16%)
Query: 464 GEYICRASNDRSALESSVTISIQAEPN-FTIP--LTDKHMDNQ-ADLTWTC--EAFGVPD 517
G C ++ + + P+ F P D M ++ ++T + P+
Sbjct: 1 GTKSCDKTHTCPPCPAP---ELLGGPSVFLFPPKPKDTLMISRTPEVTCVVVDVSHEDPE 57
Query: 518 VTYSWFRNG-ELLNSETLPLEDQ-DRYFIQDNVLTIRYLNPERDPAMYQCRAKNQLKTRY 575
V ++W+ +G E+ N++T P E+Q + + +VLT+ + + + Y+C+ N+
Sbjct: 58 VKFNWYVDGVEVHNAKTKPREEQYNSTYRVVSVLTVLHQDWL-NGKEYKCKVSNK---AL 113
Query: 576 SSAQLRVLTLKPSFKKRP----LESETYAGEGGNVTIFC-----NPEAAPKPKFV-WKKD 625
+ + ++ + P L V++ C P V W+ +
Sbjct: 114 PAPIEKTISKAKGQPREPQVYTLPPSRDELTKNQVSLTCLVKGFYPSDI----AVEWESN 169
Query: 626 GNIIGSGGRRKIFENGN--------LLISPVSRDDSGIYSCTAT 661
G + + + L + ++SC+
Sbjct: 170 GQPENNYKATPPVLDSDGSFFLYSKLTVDKSRWQQGNVFSCSVM 213
>1i1c_A IGG2A, IG gamma-2A chain C region; FC, immune system; HET: NAG FUL
BMA MAN FUC; 2.70A {Rattus norvegicus} SCOP: b.1.1.2
b.1.1.2 PDB: 1i1a_D*
Length = 239
Score = 38.4 bits (89), Expect = 0.007
Identities = 28/170 (16%), Positives = 48/170 (28%), Gaps = 21/170 (12%)
Query: 403 FPKTFPEAPKAGDKVRLECVAFGYPVPSYN----WTRRGSPLPRNA--YFENFNR----- 451
FP + G ++ CV W + E +
Sbjct: 21 FPPKTKDVLGGGLTPKVTCVVVDISQNDPEVRFSWFIDDVEVHTAQTHAPEKQSNSTLRS 80
Query: 452 --ILTIPNVKVEDQGEYICRASNDRSALESSVTIS----IQAEPNFTIPLTDKHMDNQAD 505
L I + + C+ ++ +IS P K Q+
Sbjct: 81 VSELPIVERDWLNGKTFKCKVNSGAFPAPIEKSISKPEGTPRGPQVYTMAPPKEEMTQSQ 140
Query: 506 LTWTCEA--FGVPDVTYSWFRNGELLNSE--TLPLEDQDRYFIQDNVLTI 551
++ TC F PD+ W NG+ + T P D D + + L +
Sbjct: 141 VSITCMVKGFYPPDIYTEWKMNGQPQENYKNTPPTMDTDGSYFLYSKLNV 190
Score = 32.6 bits (74), Expect = 0.51
Identities = 28/211 (13%), Positives = 53/211 (25%), Gaps = 44/211 (20%)
Query: 576 SSAQLRVLTLKPSFKKRPLESETYAGEGGNVTIFCN----PEAAPKPKFVWKKDGNIIGS 631
S V P K T + C + P+ +F W D + +
Sbjct: 12 GSEVSSVFIFPPKTKDVLGGGLT-------PKVTCVVVDISQNDPEVRFSWFIDDVEVHT 64
Query: 632 G--GRRKIFENGN------LLISPVSRDDSGIYSCTATNVHGMDESKGRLIVLHGPSYYE 683
+ N L I + + C + + I +
Sbjct: 65 AQTHAPEKQSNSTLRSVSELPIVERDWLNGKTFKCKVNS-GAFPAPIEKSISKPEGTPRG 123
Query: 684 Q----LPPKITIAAHRNLQLRCSAHTEELL------DVAYIWTHNGVRIGNMDLNELETP 733
+ P + + C ++ D+ W NG N + P
Sbjct: 124 PQVYTMAPPKEEMTQSQVSITC------MVKGFYPPDIYTEWKMNGQPQENY---KNTPP 174
Query: 734 NINIDG-----GLLEITNASFADAGEYECVV 759
++ DG L + ++ + C V
Sbjct: 175 TMDTDGSYFLYSKLNVKKETWQQGNTFTCSV 205
>3kgr_A LAIR-1, hlair1, leukocyte-associated immunoglobulin-like receptor;
IG-like domain, cell membrane, glycoprotein; 1.80A {Homo
sapiens} PDB: 3rp1_A
Length = 106
Score = 36.2 bits (84), Expect = 0.007
Identities = 11/63 (17%), Positives = 19/63 (30%), Gaps = 10/63 (15%)
Query: 603 GGNVTIFC--NPEAAPKPKFVWKKDGNIIGSGGRRKIFENG-----NLLISPVSRDDSGI 655
G +VT C F +++ + + I VS ++G
Sbjct: 23 GSHVTFVCRGPVGVQ---TFRLERESRSTYNDTEDVSQASPSESEARFRIDSVSEGNAGP 79
Query: 656 YSC 658
Y C
Sbjct: 80 YRC 82
Score = 28.5 bits (64), Expect = 3.5
Identities = 13/83 (15%), Positives = 26/83 (31%), Gaps = 12/83 (14%)
Query: 683 EQLPPKITIAAH--------RNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPN 734
E+ P+ +I+A ++ C + R D ++ +
Sbjct: 4 EEDLPRPSISAEPGTVIPLGSHVTFVCRGPVG---VQTFRLERES-RSTYNDTEDVSQAS 59
Query: 735 INIDGGLLEITNASFADAGEYEC 757
+ I + S +AG Y C
Sbjct: 60 PSESEARFRIDSVSEGNAGPYRC 82
>1igt_B IGG2A intact antibody - MAB231; intact immunoglobulin V region C
region, immunoglobulin; HET: NAG FUL BMA MAN GAL FUC;
2.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 b.1.1.2
b.1.1.2
Length = 444
Score = 38.7 bits (90), Expect = 0.008
Identities = 47/279 (16%), Positives = 82/279 (29%), Gaps = 66/279 (23%)
Query: 400 PNNFPKTFPEAPKAGDKVRLECVAFGY-PVP-SYNWTRRGSPLPRNAYFENFNRI----- 452
P+ +P G V L C+ GY P P + W ++ F +
Sbjct: 124 PSVYPLAPVCGDTTGSSVTLGCLVKGYFPEPVTLTWNSGS----LSSGVHTFPAVLQSDL 179
Query: 453 ------LTIPNVKVEDQGEYICRASNDRSALESSVTISIQAEPNFT-------------- 492
+T+ + Q C ++ S+ + I +
Sbjct: 180 YTLSSSVTVTSSTWPSQ-SITCNVAHPASSTKVDKKIEPRGPTIKPCPPCKCPAPNLLGG 238
Query: 493 ------IPLTDKHMDNQADLTWTCEAFGV----PDVTYSWFRNGELLNS--ETLPLEDQD 540
P + TC V PDV SWF N +++ ED +
Sbjct: 239 PSVFIFPPKIKDVLMISLSPIVTCVVVDVSEDDPDVQISWFVNNVEVHTAQTQTHREDYN 298
Query: 541 RYFIQDNVLTIRYLNPERDPAMYQCRAKNQ----------LKTRYSSAQLRVLTLKPSFK 590
+ L I++ + ++C+ N+ K + S +V L P
Sbjct: 299 STLRVVSALPIQHQDWM-SGKEFKCKVNNKDLPAPIERTISKPKGSVRAPQVYVLPPP-- 355
Query: 591 KRPLESETYAGEGGNVTIFCN-PEAAPKPKFV-WKKDGN 627
E VT+ C + P+ +V W +G
Sbjct: 356 -----EEEMT--KKQVTLTCMVTDFMPEDIYVEWTNNGK 387
Score = 33.4 bits (76), Expect = 0.34
Identities = 68/442 (15%), Positives = 121/442 (27%), Gaps = 88/442 (19%)
Query: 408 PEAPKAGDKVRLECVAFGYPVPSY--NWTRR--GSPL----------PRNAYFENF-NRI 452
+ G ++L C G+ Y W R+ L Y + R
Sbjct: 9 GGLVQPGGSLKLSCATSGFTFSDYYMYWVRQTPEKRLEWVAYISNGGGSTYYPDTVKGRF 68
Query: 453 ------------LTIPNVKVEDQGEYICRASNDRSALE-----SSVTIS--IQAEPNFTI 493
L + +K ED Y C A++ ++VT+S P+
Sbjct: 69 TISRDNAKNTLYLQMSRLKSEDTAMYYCARHGGYYAMDYWGQGTTVTVSSAKTTAPSVYP 128
Query: 494 PLTDKHMDNQADLTWTCEA--FGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQDNVLTI 551
+ +T C + VT +W T P Q + + +T+
Sbjct: 129 LAPVCGDTTGSSVTLGCLVKGYFPEPVTLTWNSGSLSSGVHTFPAVLQSDLYTLSSSVTV 188
Query: 552 RYLNPERDPAMYQCRAKNQLKTRYSSAQLRV-----------------LTLKPSFKKRPL 594
C + + ++ L PS P
Sbjct: 189 TSSTWPSQS--ITCNVAHPASSTKVDKKIEPRGPTIKPCPPCKCPAPNLLGGPSVFIFPP 246
Query: 595 ESETYAGEGGNVTIFC-----NPEAAPKPKFVWKKDGNIIGSGGRRKIFENGNLLISPVS 649
+ + + + C + + P + W + + + + E+ N + VS
Sbjct: 247 KIKDVLMISLSPIVTCVVVDVSED-DPDVQISWFVNNVEVHTAQTQTHREDYNSTLRVVS 305
Query: 650 R--------DDSGIYSCTATNVHGMDESKGRLIVL-----HGPSYYEQLPPKITIAAHRN 696
+ C N + R I P Y LPP +
Sbjct: 306 ALPIQHQDWMSGKEFKCKVNN-KDLPAPIERTISKPKGSVRAPQVYV-LPPPEEEMTKKQ 363
Query: 697 LQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGL------LEITNASFA 750
+ L C D+ WT+NG LN T + G L + ++
Sbjct: 364 VTLTCMVTDFMPEDIYVEWTNNGKTE----LNYKNTEPVLDSDGSYFMYSKLRVEKKNWV 419
Query: 751 DAGEYECVV--KSTVGKISTKT 770
+ Y C V + +TK+
Sbjct: 420 ERNSYSCSVVHEGLHNHHTTKS 441
>1l6x_A Immunoglobulin gamma-1 heavy chain constant regio; IGG1 FC, FC
complex, immune system; HET: NAG BMA MAN GAL FUL; 1.65A
{Homo sapiens} SCOP: b.1.1.2 b.1.1.2 PDB: 2iwg_A*
3v7m_A* 3d6g_A* 3agv_A* 1oqo_A* 1oqx_A* 3v95_A* 2wah_A*
3sgj_A* 3sgk_A* 2dtq_A* 2dts_A* 3ave_A* 3ay4_A* 3do3_A*
2gj7_A* 1t83_A* 1t89_A* 1dn2_A* 3dnk_A ...
Length = 207
Score = 37.6 bits (87), Expect = 0.009
Identities = 39/174 (22%), Positives = 59/174 (33%), Gaps = 29/174 (16%)
Query: 403 FPKTFPEAPKAGDKVRLECVAFGYPVPSYN----WTRRGSPL------PRNAYFENFNRI 452
FP + + CV W G + PR + + R+
Sbjct: 7 FPPKPKDTLMISRTPEVTCVVVDVSHEDPEVKFNWYVDGVEVHNAKTKPREEQYNSTYRV 66
Query: 453 ---LTIPNVKVEDQGEYICRASNDRSALESSVTISIQAEPNFTI--------PLTDKHMD 501
LT+ + + EY C+ SN AL + + +I P D+
Sbjct: 67 VSVLTVLHQDWLNGKEYKCKVSN--KALPAPIEKTISKAKGQPREPQVYTLPPSRDELTK 124
Query: 502 NQADLTWTCEA--FGVPDVTYSWFRNGELLNSE--TLPLEDQDRYFIQDNVLTI 551
NQ L TC F D+ W NG+ N+ T P+ D D F + LT+
Sbjct: 125 NQVSL--TCLVKGFYPSDIAVEWESNGQPENNYKTTPPVLDSDGSFFLYSKLTV 176
Score = 29.9 bits (67), Expect = 2.8
Identities = 39/210 (18%), Positives = 62/210 (29%), Gaps = 30/210 (14%)
Query: 582 VLTLKPSFKKRPLESETYAGEGGNVTIFCN--PEAAPKPKFVWKKDGNIIGSGGRRKIFE 639
V P K + S T VT P+ KF W DG + + + E
Sbjct: 4 VFLFPPKPKDTLMISRT-----PEVTCVVVDVSHEDPEVKFNWYVDGVEVHNAKTKPREE 58
Query: 640 NGN--------LLISPVSRDDSGIYSCTATNVHGMDESKGRLIVL----HGPSYYEQLPP 687
N L + + Y C +N + + P Y LPP
Sbjct: 59 QYNSTYRVVSVLTVLHQDWLNGKEYKCKVSNKALPAPIEKTISKAKGQPREPQVY-TLPP 117
Query: 688 KITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDG-----GLL 742
+ L C D+A W NG N + P ++ DG L
Sbjct: 118 SRDELTKNQVSLTCLVKGFYPSDIAVEWESNGQPENNY---KTTPPVLDSDGSFFLYSKL 174
Query: 743 EITNASFADAGEYECVV--KSTVGKISTKT 770
+ + + + C V ++ + K+
Sbjct: 175 TVDKSRWQQGNVFSCSVMHEALHNHYTQKS 204
>2csp_A RIM-BP2, RIM binding protein 2; FN3 domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1
Length = 130
Score = 36.7 bits (84), Expect = 0.009
Identities = 19/115 (16%), Positives = 34/115 (29%), Gaps = 11/115 (9%)
Query: 869 GEPSSPSPQYNTPADKPYQAPSRIG-GGGGKIGDLSISWEPLPREKQNAPN----IYYKI 923
G S +++T P P + G + +SW P N Y +
Sbjct: 1 GSSGSSGVEFSTLPAGPPAPPQDVTVQAGVTPATIRVSWRPPVLTPTGLSNGANVTGYGV 60
Query: 924 FWRKKNDTEFQSETLKEYGNVGIAVVRIPSEFYYTEYEVKVQAINDVGPGPESEV 978
+ + + E T V + V V+ ++ G +S V
Sbjct: 61 YAKGQRVAEVIFPTA------DSTAVELVRLRSLEAKGVTVRTLSAQGESVDSAV 109
>1pko_A Myelin oligodendrocyte glycoprotein; IGV-domain, immune system;
1.45A {Rattus norvegicus} SCOP: b.1.1.1 PDB: 1pkq_E
3csp_A 1py9_A
Length = 139
Score = 36.4 bits (84), Expect = 0.010
Identities = 11/37 (29%), Positives = 15/37 (40%)
Query: 742 LEITNASFADAGEYECVVKSTVGKISTKTTVIVEGPP 778
L I N F+D G Y C + + + VE P
Sbjct: 87 LRIQNVRFSDEGGYTCFFRDHSYQEEAAVELKVEDPF 123
Score = 35.3 bits (81), Expect = 0.029
Identities = 11/45 (24%), Positives = 20/45 (44%)
Query: 453 LTIPNVKVEDQGEYICRASNDRSALESSVTISIQAEPNFTIPLTD 497
L I NV+ D+G Y C + E++V + ++ + P
Sbjct: 87 LRIQNVRFSDEGGYTCFFRDHSYQEEAAVELKVEDPFYWINPGRS 131
Score = 28.0 bits (62), Expect = 8.0
Identities = 20/115 (17%), Positives = 40/115 (34%), Gaps = 16/115 (13%)
Query: 491 FTIPLTDKHMDNQADLTWTCEAFGVPDVTYSWFRNGELLNSETLP-----LEDQDRYFIQ 545
+ M+ + W V + + RNG+ ++E P E +
Sbjct: 30 ISPGKNATGME----VGWYRS--PFSRVVHLY-RNGKDQDAEQAPEYRGRTELLKESIGE 82
Query: 546 DNV-LTIRYLNPERDPAMYQCRAKNQLKTRYSSAQLRVLTLKPSFKKRPLESETY 599
V L I+ + D Y C ++ ++ +L+V P + P S ++
Sbjct: 83 GKVALRIQNVRFS-DEGGYTCFFRDHSYQEEAAVELKVED--PFYWINPGRSRSH 134
>2rgs_A I, IG gamma-2B heavy chain; FC-fragment, immunoglobulin,
glycosylation, immune system; HET: NAG FUC MAN GAL;
2.13A {Mus musculus}
Length = 218
Score = 37.6 bits (87), Expect = 0.011
Identities = 29/173 (16%), Positives = 57/173 (32%), Gaps = 27/173 (15%)
Query: 403 FPKTFPEAPKAGDKVRLECVAFGYPVPSYN----WTRRGSPLPR---NAYFENFNR---- 451
FP + ++ CV + W + + E++N
Sbjct: 15 FPPNIKDVLMISLTPKVTCVVVDVSEDDPDVQISWFVNNVEVHTAQTQTHREDYNSTIRV 74
Query: 452 --ILTIPNVKVEDQGEYICRASNDRSALESSVTISIQAEPN-------FTIPLTDKHMDN 502
L I + E+ C+ +N L S + +I + +P + +
Sbjct: 75 VSTLPIQHQDWMSGKEFKCKVNN--KDLPSPIERTISKIKGLVRAPQVYILPPPAEQLSR 132
Query: 503 QADLTWTCEA--FGVPDVTYSWFRNGELLNSE--TLPLEDQDRYFIQDNVLTI 551
+ D++ TC F D++ W NG + T P+ D D + + L +
Sbjct: 133 K-DVSLTCLVVGFNPGDISVEWTSNGHTEENYKDTAPVLDSDGSYFIYSKLNM 184
Score = 34.5 bits (79), Expect = 0.11
Identities = 36/220 (16%), Positives = 61/220 (27%), Gaps = 40/220 (18%)
Query: 577 SAQLRVLTLKPSFKKRPLESETYAGEGGNVTIFCN--PEAAPKPKFVWKKDGNIIGSGGR 634
V P+ K + S T VT E P + W + + +
Sbjct: 7 EGGPSVFIFPPNIKDVLMISLT-----PKVTCVVVDVSEDDPDVQISWFVNNVEVHTAQT 61
Query: 635 RKIFENGN--------LLISPVSRDDSGIYSCTATNVHGMDESKGRLIVLHGPSYYEQLP 686
+ E+ N L I + C N + + + G
Sbjct: 62 QTHREDYNSTIRVVSTLPIQHQDWMSGKEFKCKVNNKDLPSPIERTISKIKGL----VRA 117
Query: 687 PKITIAAHRNLQLRCSAHTEELL---------DVAYIWTHNGVRIGNMDLNELETPNINI 737
P++ I QL + L D++ WT NG N + P ++
Sbjct: 118 PQVYILPPPAEQLSRKDVS--LTCLVVGFNPGDISVEWTSNGHTEENY---KDTAPVLDS 172
Query: 738 DG-----GLLEITNASFADAGEYECVV--KSTVGKISTKT 770
DG L + + + + C V + KT
Sbjct: 173 DGSYFIYSKLNMKTSKWEKTDSFSCNVRHEGLKNYYLKKT 212
>2w59_A IGY FCU3-4; immunoglobulin, avian, immune system; HET: NAG MAN;
1.75A {Gallus gallus}
Length = 231
Score = 37.3 bits (86), Expect = 0.015
Identities = 21/144 (14%), Positives = 41/144 (28%), Gaps = 20/144 (13%)
Query: 408 PEAPKAGDKVRLECVAFGYPVPS---YNWTRRGS------PLPRNAYFENFNRI---LTI 455
P +L C+ P S WTR S P+ +F + +
Sbjct: 22 PGELYISLDAKLRCLVVNLPSDSSLSVTWTREKSGNLRPDPMVLQEHFNGTYSASSAVPV 81
Query: 456 PNVKVEDQGEYICRASNDRSALESSVTISIQAEPN-----FTIPLTDKHMDNQADLTWTC 510
+ C ++ L S ++ P + + + +T +C
Sbjct: 82 STQDWLSGERFTCTVQHEELPLPLSKSVYRNTGPTTPPLIYPFAPHPEELSLS-RVTLSC 140
Query: 511 EAFGV--PDVTYSWFRNGELLNSE 532
G D+ W R+ + +
Sbjct: 141 LVRGFRPRDIEIRWLRDHRAVPAT 164
>1eaj_A Coxsackie virus and adenovirus receptor; virus/viral protein
receptor, immunoglobulin V domain fold, symmetric dimer;
1.35A {Homo sapiens} SCOP: b.1.1.1 PDB: 1f5w_A 2j12_B
2j1k_A 2wbw_B* 2w9l_A* 1rsf_A 1jew_R 1kac_B 1p69_B
1p6a_B
Length = 126
Score = 35.6 bits (82), Expect = 0.016
Identities = 9/37 (24%), Positives = 17/37 (45%)
Query: 640 NGNLLISPVSRDDSGIYSCTATNVHGMDESKGRLIVL 676
+ ++ ++ + D G Y C G+ K L+VL
Sbjct: 88 DASINVTNLQLSDIGTYQCKVKKAPGVANKKIHLVVL 124
Score = 34.8 bits (80), Expect = 0.032
Identities = 11/33 (33%), Positives = 18/33 (54%)
Query: 742 LEITNASFADAGEYECVVKSTVGKISTKTTVIV 774
+ +TN +D G Y+C VK G + K ++V
Sbjct: 91 INVTNLQLSDIGTYQCKVKKAPGVANKKIHLVV 123
Score = 33.7 bits (77), Expect = 0.085
Identities = 5/31 (16%), Positives = 13/31 (41%)
Query: 453 LTIPNVKVEDQGEYICRASNDRSALESSVTI 483
+ + N+++ D G Y C+ + +
Sbjct: 91 INVTNLQLSDIGTYQCKVKKAPGVANKKIHL 121
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 36.1 bits (82), Expect = 0.019
Identities = 8/33 (24%), Positives = 14/33 (42%), Gaps = 15/33 (45%)
Query: 586 KPSFKKRPLES--ETYAGEGGNVTIFCNPEAAP 616
K + KK L++ + YA ++AP
Sbjct: 19 KQALKK--LQASLKLYA-----------DDSAP 38
>3mpc_A FN3-like protein; fibronectin, FN(III), unknown function; 1.60A
{Clostridium thermocellum}
Length = 103
Score = 35.1 bits (81), Expect = 0.019
Identities = 16/99 (16%), Positives = 32/99 (32%), Gaps = 13/99 (13%)
Query: 777 PPGLPGGVQVVEVHKTSATIQWTDGATNGRPITHYKIIARTNWNSTWFNVSEHVIGKEVD 836
P P G+ V + + T T A G Y + T + ++ ++
Sbjct: 4 APAFPTGLSAV-LDSSGNTANLTWNAAPG--ANSYNVKRSTKSGGPYTTIATNITS---T 57
Query: 837 RYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPS 875
YT + + + Y + V A + S+ +
Sbjct: 58 NYT-------DTGVATGTKYYYVVSAVSNGVETLNSAEA 89
>2j6e_L IGM, FAB light chain; autoimmune complex human IGM rheumatoid
factor IGG1-FC, immunoglobulin C region, membrane,
glycoprotein, transmembrane; HET: NAG FUL BMA MAN NDG
GAL; 3.0A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2
Length = 234
Score = 36.6 bits (85), Expect = 0.023
Identities = 24/146 (16%), Positives = 49/146 (33%), Gaps = 20/146 (13%)
Query: 350 DGALYFSALEQIDAGNYSCNVQSKVSDTGRNGPFFPL--KVFPHSNFQQLKFPNNFPKTF 407
+L S L D +Y C + D + F K+ + FP +
Sbjct: 90 SASLAISGLRSEDEADYYC--AT--WDDSLSAVIFGGGTKLTVLGQPKAAPSVTLFPPSS 145
Query: 408 PEAPKAGDKVRLECVAFGYPVPSY--NWTRRGSPLPRNAYFENFNRI----------LTI 455
E +K L C+ + + W G+P+ ++ L++
Sbjct: 146 EELQ--ANKATLVCLISDFFPGAVTVAWKADGAPVKAGVETTKPSKQSNNKYAASSYLSL 203
Query: 456 PNVKVEDQGEYICRASNDRSALESSV 481
+ + Y C+ +++ S +E +V
Sbjct: 204 TPEQWKSHRSYSCQVTHEGSTVEKTV 229
>2qsq_A Carcinoembryonic antigen-related cell adhesion MO; glycoprotein,
GPI-anchor, immunoglobulin DOMA lipoprotein, membrane;
1.95A {Homo sapiens} PDB: 2qst_A 2ver_N* 2gk2_A
Length = 111
Score = 34.5 bits (79), Expect = 0.036
Identities = 13/45 (28%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
Query: 632 GGRRKIFENGNLLISPVSRDDSGIYSCTATNVH-GMDESKGRLIV 675
GR I+ N +LLI + ++D+G Y+ +E+ G+ V
Sbjct: 63 SGREIIYPNASLLIQNIIQNDAGFYTLHVIKSDLVNEEATGQFRV 107
>2b5i_C Cytokine receptor common gamma chain; four-helix bundle,
fibronectin domain, cytokine-cytokine REC complex; HET:
NAG; 2.30A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 PDB:
3bpl_C* 3qb7_C* 3qaz_C*
Length = 199
Score = 35.1 bits (80), Expect = 0.053
Identities = 18/156 (11%), Positives = 46/156 (29%), Gaps = 14/156 (8%)
Query: 823 WFNVSEHVIGKEVDRYTGRKEASIE---NVLVPWSTYEFKVIAGNELGYGEPSSPSPQYN 879
W+ S++ ++ Y +E + F V + ++ +
Sbjct: 35 WYKNSDNDKVQKCSHYLFSEEITSGCQLQKKEIHLYQTFVVQLQDPREPRRQATQMLKL- 93
Query: 880 TPADKPYQAPSRIGGGGGKIGDLSISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETLK 939
P AP + L ++W + + + + +R D + +++
Sbjct: 94 QNLVIP-WAPENLTLHKLSESQLELNWNN----RFLNHCLEHLVQYRTDWDHSWTEQSVD 148
Query: 940 EYGNVGIAVVRIPSEFYYTEYEVKVQAINDVGPGPE 975
+PS Y +V++ + G
Sbjct: 149 -----YRHKFSLPSVDGQKRYTFRVRSRFNPLCGSA 179
Score = 30.5 bits (68), Expect = 1.9
Identities = 16/120 (13%), Positives = 39/120 (32%), Gaps = 16/120 (13%)
Query: 759 VKSTVGKISTKTTVIVEGP---PGLPGGVQVVEVHKTSATIQWTDGATNGRPITHYKIIA 815
++ T ++ P P + + ++ ++ + W + + +
Sbjct: 77 LQDPREPRRQATQMLKLQNLVIPWAPENLTLHKLSESQLELNWNN--RFLNHCLEHLVQY 134
Query: 816 RTNWNSTWFNVSEHVIGKEVDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPS 875
RT+W+ +W S R + S+ + + Y F+V + G S
Sbjct: 135 RTDWDHSWTEQSV----------DYRHKFSLPS-VDGQKRYTFRVRSRFNPLCGSAQHWS 183
>1a64_A CD2; domain swapping, hinge loop, oligomer evolution; 2.00A {Rattus
norvegicus} SCOP: b.1.1.1 PDB: 1a7b_A 1cdc_B 1a6p_A
1t6w_A
Length = 97
Score = 33.5 bits (76), Expect = 0.059
Identities = 19/74 (25%), Positives = 32/74 (43%), Gaps = 8/74 (10%)
Query: 601 GEGGNVTIFCNPEAAPKPKFVWKKDGNIIGS--------GGRRKIFENGNLLISPVSRDD 652
G G N+ I + W++ ++ G +I NG+L I ++RDD
Sbjct: 11 GHGINLNIPNFQMTDDIDEVRWERGSTLVAEFKRKPFLKSGAFEILANGDLKIKNLTRDD 70
Query: 653 SGIYSCTATNVHGM 666
SG Y+ T + +G
Sbjct: 71 SGTYNVTVYSTNGT 84
>1y6k_R Interleukin-10 receptor alpha chain; helix bundle, receptor
complex, immune system; 2.52A {Homo sapiens} SCOP:
b.1.2.1 b.1.2.1 PDB: 1j7v_R* 1lqs_R 1y6m_R 1y6n_R
Length = 214
Score = 34.7 bits (79), Expect = 0.083
Identities = 23/194 (11%), Positives = 56/194 (28%), Gaps = 24/194 (12%)
Query: 795 TIQWTDGATNGRPITHYKIIARTNWNSTWFNVSEHVIGKEVDRYTGRKEASIENVLVPWS 854
+ WT T Y++ +W ++S+ D ++ L +
Sbjct: 21 ILHWTPIPQQSES-TCYEVALLRYGIESWNSISQCSQTLSYDL------TAVTLDLYHSN 73
Query: 855 TYEFKVIA---GNELGYGEPSSPSPQYNTPADKPYQAPSRIGGGGGKIGDLSISWEPLPR 911
Y +V A + ++ + + G +G + + +
Sbjct: 74 GYRARVRAVDGSRHSQWTVTNTRFSVDEVTLTVG--SVNLEIHNGFILGKIQLPRPKMAP 131
Query: 912 EKQNAPNIY-----YKIFWRKKNDTEFQSETLKEYGNVGIAVVRIPSEFYYTEYEVKVQA 966
+ +I+ Y+I RK + ++ + E+ V+V+
Sbjct: 132 AQDTYESIFSHFREYEIAIRKVPGQFTFTHKKVKHEQFSLLTSG-----EVGEFCVQVKP 186
Query: 967 I--NDVGPGPESEV 978
+ G S+
Sbjct: 187 SVASRSNKGMWSKE 200
>2erj_C Cytokine receptor common gamma chain; immune system-cytok complex;
HET: NAG FUC BMA; 3.00A {Homo sapiens} SCOP: b.1.2.1
b.1.2.1
Length = 247
Score = 35.2 bits (80), Expect = 0.085
Identities = 28/241 (11%), Positives = 67/241 (27%), Gaps = 29/241 (12%)
Query: 740 GLLEITNAS-FADAGEYECVVKSTVGKISTKTTVIVEGPPGLPGGVQVVEVHKTSATIQW 798
G+L + N + G + + ++T T + VQ + W
Sbjct: 1 GMLSLLNTTILTPNGNEDT---TADFFLTTMPTDSLSVSTLPLPEVQCFVFNVEYMNCTW 57
Query: 799 TDG-ATNGRPITHYKIIARTNWNSTWFNVSEHVIGKEVDRYTGRKEASIE---NVLVPWS 854
+T + W+ S++ ++ Y +E +
Sbjct: 58 QSSSEPQPTNLTLH----------YWYKNSDNDKVQKCSHYLFSEEITSGCQLQKKEIHL 107
Query: 855 TYEFKVIAGNELGYGEPSSPSPQYNTPADKPYQAPSRIGGGGGKIGDLSISWEPLPREKQ 914
F V + ++ + P AP + L ++W +
Sbjct: 108 YQTFVVQLQDPREPRRQATQMLKL-QNLVIP-WAPENLTLHKLSESQLELNWNN----RF 161
Query: 915 NAPNIYYKIFWRKKNDTEFQSETLKEYGNVGIAVVRIPSEFYYTEYEVKVQAINDVGPGP 974
+ + + +R D + +++ +PS Y +V++ + G
Sbjct: 162 LNHCLEHLVQYRTDWDHSWTEQSVD-----YRHKFSLPSVDGQKRYTFRVRSRFNPLCGS 216
Query: 975 E 975
Sbjct: 217 A 217
Score = 33.2 bits (75), Expect = 0.32
Identities = 17/120 (14%), Positives = 40/120 (33%), Gaps = 16/120 (13%)
Query: 759 VKSTVGKISTKTTVIVEGP---PGLPGGVQVVEVHKTSATIQWTDGATNGRPITHYKIIA 815
++ T ++ P P + + ++ ++ + W + N + +
Sbjct: 115 LQDPREPRRQATQMLKLQNLVIPWAPENLTLHKLSESQLELNWNNRFLN--HCLEHLVQY 172
Query: 816 RTNWNSTWFNVSEHVIGKEVDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPS 875
RT+W+ +W S R + S+ + + Y F+V + G S
Sbjct: 173 RTDWDHSWTEQSV----------DYRHKFSLPS-VDGQKRYTFRVRSRFNPLCGSAQHWS 221
>2ptt_A CD48 antigen; CD244, CD48, NK cell receptor, X-RAY, immune system;
1.63A {Mus musculus} PDB: 2ptv_A
Length = 110
Score = 33.3 bits (76), Expect = 0.087
Identities = 22/92 (23%), Positives = 29/92 (31%), Gaps = 18/92 (19%)
Query: 602 EGGNVTIFCN-PEAAPKPKFVWKKDGN----IIGSGGRRKIF------------ENGNLL 644
G NVT+ + P + W N + IF NG L
Sbjct: 17 TGSNVTLKIHKDPLGPYRRITWLHTKNQKILEYNYNSTKTIFESEFKGRVYLEENNGALH 76
Query: 645 ISPVSRDDSGIYSCTATNVHGMDESKGRLIVL 676
IS V ++D G Y +E K L V
Sbjct: 77 ISNVRKEDKGTYYMR-VLRETENELKITLEVF 107
Score = 31.4 bits (71), Expect = 0.46
Identities = 9/23 (39%), Positives = 12/23 (52%)
Query: 453 LTIPNVKVEDQGEYICRASNDRS 475
L I NV+ ED+G Y R +
Sbjct: 75 LHISNVRKEDKGTYYMRVLRETE 97
Score = 28.7 bits (64), Expect = 3.4
Identities = 21/101 (20%), Positives = 30/101 (29%), Gaps = 12/101 (11%)
Query: 687 PKITIAAHRNLQLRCSAHTEELLDVAYIWTHN-GVRIGNMDLNELETPN---------IN 736
P I N+ L+ W H +I + N +T +
Sbjct: 11 PDINAYTGSNVTLKIHKDPLGPYRR-ITWLHTKNQKILEYNYNSTKTIFESEFKGRVYLE 69
Query: 737 IDGGLLEITNASFADAGEYECVVKSTVGKISTKTTVIVEGP 777
+ G L I+N D G Y V K T+ V P
Sbjct: 70 ENNGALHISNVRKEDKGTYYMRVLRETEN-ELKITLEVFDP 109
>3o3u_N Maltose-binding periplasmic protein, advanced Gly END
product-specific receptor; RAGE, AGER, scavenger
receptor; HET: MLR; 1.50A {Escherichia coli} PDB: 3cjj_A
2l7u_A* 2e5e_A
Length = 581
Score = 35.3 bits (81), Expect = 0.11
Identities = 28/111 (25%), Positives = 43/111 (38%), Gaps = 20/111 (18%)
Query: 427 PVPSYNWTRRGSPLPRNAYFENFNRILTIPNVKVEDQGEYICRASNDRSALESSVTISIQ 486
P W LP N L +P V ++D+G + C+A N S
Sbjct: 416 PQGGGPWDSVARVLP--------NGSLFLPAVGIQDEGIFRCQAMNRNGKETKSNYRV-- 465
Query: 487 AEPNFTIPLTDKHMDNQADLTW-------TCEAFG-VPDVTYSWFRNGELL 529
+ IP + +D+ ++LT TC + G P T SW +G+ L
Sbjct: 466 --RVYQIPGKPEIVDSASELTAGVPNKVGTCVSEGSYPAGTLSWHLDGKPL 514
>3moq_A NEW antigen receptor variable domain, P3(40) PEPT amyloid beta A4
protein; AB-ignar, AB-12Y-2, glycoprotein, membran
protease inhibitor; 2.05A {Orectolobus maculatus} PDB:
2z8w_C 2z8v_C 1ves_A 1ver_A
Length = 126
Score = 33.2 bits (76), Expect = 0.11
Identities = 18/82 (21%), Positives = 32/82 (39%), Gaps = 19/82 (23%)
Query: 212 ITLSCY--AGGYPNPSYEWFKE---------DYVQDRLVANLIDPLSDKRFTLSGGNLII 260
+T++C + W++ + R V + K F+L I
Sbjct: 18 LTINCVLRDASFELKDTGWYRTKLGSTNEQSISIGGRYVETV--NKGSKSFSLR-----I 70
Query: 261 NDPRQVEDRGSYHCKASNKFGS 282
+D +VED G+Y C+A F +
Sbjct: 71 SDL-RVEDSGTYKCQAFYVFFA 91
>1neu_A Myelin P0 protein; structural protein, glycoprotein, transmembrane,
phosphorylation, immunoglobulin fold, signal; 1.90A
{Rattus norvegicus} SCOP: b.1.1.1
Length = 124
Score = 33.0 bits (75), Expect = 0.12
Identities = 10/39 (25%), Positives = 16/39 (41%), Gaps = 2/39 (5%)
Query: 453 LTIPNVKVEDQGEYICRASN--DRSALESSVTISIQAEP 489
+ I N+ D G + C N D S VT+ + +
Sbjct: 83 IVIHNLDYSDNGTFTCDVKNPPDIVGKTSQVTLYVFEKV 121
Score = 31.5 bits (71), Expect = 0.44
Identities = 11/40 (27%), Positives = 21/40 (52%), Gaps = 3/40 (7%)
Query: 742 LEITNASFADAGEYECVVKST--VGKISTKTTVIV-EGPP 778
+ I N ++D G + C VK+ + +++ T+ V E P
Sbjct: 83 IVIHNLDYSDNGTFTCDVKNPPDIVGKTSQVTLYVFEKVP 122
Score = 31.1 bits (70), Expect = 0.55
Identities = 15/79 (18%), Positives = 28/79 (35%), Gaps = 6/79 (7%)
Query: 317 CDPPTNYPGVNYYWARDYFPNFVEEDKRV-FVSY----DGALYFSALEQIDAGNYSCNVQ 371
+Y + Y +R+ +V DG++ L+ D G ++C+V+
Sbjct: 42 EGGRDAISIFHYAKGQPYIDEVGTFKERIQWVGDPSWKDGSIVIHNLDYSDNGTFTCDVK 101
Query: 372 SKVSDTGRNGPFFPLKVFP 390
+ D L VF
Sbjct: 102 NP-PDIVGKTSQVTLYVFE 119
Score = 29.9 bits (67), Expect = 1.6
Identities = 19/116 (16%), Positives = 32/116 (27%), Gaps = 31/116 (26%)
Query: 595 ESETYAGEGGNVTIFC--------------------NPEAAPKPKFVWKKDGNIIGSGGR 634
+ E Y G VT+ C F + K I G
Sbjct: 6 DREVYGAVGSQVTLHCSFWSSEWVSDDISFTWRYQPEGGRDAISIFHYAKGQPYIDEVGT 65
Query: 635 ---RKIFE------NGNLLISPVSRDDSGIYSCTATNVHGMDESKG--RLIVLHGP 679
R + +G+++I + D+G ++C N + L V
Sbjct: 66 FKERIQWVGDPSWKDGSIVIHNLDYSDNGTFTCDVKNPPDIVGKTSQVTLYVFEKV 121
>1sq2_N Novel antigen receptor; immunoglobulin fold, protein-protein
complex, hydrolase/immune system complex; 1.45A
{Ginglymostoma cirratum} SCOP: b.1.1.1 PDB: 1t6v_N
Length = 113
Score = 32.7 bits (75), Expect = 0.14
Identities = 18/81 (22%), Positives = 26/81 (32%), Gaps = 19/81 (23%)
Query: 213 TLSCYAGGYPNPSY--EWFKED---------YVQDRLVANLIDPLSDKRFTLSGGNLIIN 261
T++C W+++ R V + K F+L IN
Sbjct: 19 TINCVLRDASYALGSTCWYRKKSGEGNEESISKGGRYVETV--NSGSKSFSLR-----IN 71
Query: 262 DPRQVEDRGSYHCKASNKFGS 282
D VED G+Y C G
Sbjct: 72 DL-TVEDGGTYRCGLGVAGGY 91
Score = 31.6 bits (72), Expect = 0.38
Identities = 17/77 (22%), Positives = 24/77 (31%), Gaps = 14/77 (18%)
Query: 413 AGDKVRLECVAFGYPVPSYN--WTRRGSPLPRNA-------YFENFNRI-----LTIPNV 458
G+ + + CV + W R+ S Y E N L I ++
Sbjct: 14 TGESLTINCVLRDASYALGSTCWYRKKSGEGNEESISKGGRYVETVNSGSKSFSLRINDL 73
Query: 459 KVEDQGEYICRASNDRS 475
VED G Y C
Sbjct: 74 TVEDGGTYRCGLGVAGG 90
>3r0n_A Poliovirus receptor-related protein 2; IG-domain, cell-adhesion
molecule, virus entry receptor, STR genomics,
PSI-biology; 1.30A {Homo sapiens}
Length = 128
Score = 33.0 bits (75), Expect = 0.15
Identities = 7/20 (35%), Positives = 11/20 (55%)
Query: 453 LTIPNVKVEDQGEYICRASN 472
L + + VED+G Y C +
Sbjct: 95 LALHGLTVEDEGNYTCEFAT 114
Score = 31.5 bits (71), Expect = 0.50
Identities = 8/34 (23%), Positives = 12/34 (35%), Gaps = 1/34 (2%)
Query: 742 LEITNASFADAGEYEC-VVKSTVGKISTKTTVIV 774
L + + D G Y C G + T + V
Sbjct: 95 LALHGLTVEDEGNYTCEFATFPKGSVRGMTWLRV 128
Score = 29.6 bits (66), Expect = 2.3
Identities = 10/47 (21%), Positives = 17/47 (36%), Gaps = 1/47 (2%)
Query: 630 GSGGRRKIFENGNLLISPVSRDDSGIYSCT-ATNVHGMDESKGRLIV 675
++ L + ++ +D G Y+C AT G L V
Sbjct: 82 TGQDTEAELQDATLALHGLTVEDEGNYTCEFATFPKGSVRGMTWLRV 128
>2or8_A Hepatitis A virus cellular receptor 1 homolog; beta barrel,
immunoglobulin fold, IGV domain, TIM, immune system;
2.50A {Mus musculus}
Length = 116
Score = 32.6 bits (74), Expect = 0.15
Identities = 23/101 (22%), Positives = 30/101 (29%), Gaps = 24/101 (23%)
Query: 413 AGDKVRLECVAFGYPVPSY-NWTRRGSPLP-----------RNAYFENFNRI-------- 452
G V L C Y + W R P ++ +R
Sbjct: 11 VGHPVTLPCTYSTYRGITTTCWGRGQCPSSACQNTLIWTNGHRVTYQKSSRYNLKGHISE 70
Query: 453 ----LTIPNVKVEDQGEYICRASNDRSALESSVTISIQAEP 489
LTI N D G Y CR + VT S+Q +P
Sbjct: 71 GDVSLTIENSVESDSGLYCCRVEIPGWFNDQKVTFSLQVKP 111
Score = 30.3 bits (68), Expect = 1.2
Identities = 11/37 (29%), Positives = 17/37 (45%)
Query: 742 LEITNASFADAGEYECVVKSTVGKISTKTTVIVEGPP 778
L I N+ +D+G Y C V+ K T ++ P
Sbjct: 75 LTIENSVESDSGLYCCRVEIPGWFNDQKVTFSLQVKP 111
Score = 29.5 bits (66), Expect = 2.1
Identities = 17/87 (19%), Positives = 24/87 (27%), Gaps = 23/87 (26%)
Query: 595 ESETYAGEGGNVTIFCNPEAAPKPKFV-WKKDG--------NIIGSGGRRKIF------- 638
E G VT+ C W + +I + G R +
Sbjct: 4 YVEVKGVVGHPVTLPCTYSTYRGITTTCWGRGQCPSSACQNTLIWTNGHRVTYQKSSRYN 63
Query: 639 -----ENGN--LLISPVSRDDSGIYSC 658
G+ L I DSG+Y C
Sbjct: 64 LKGHISEGDVSLTIENSVESDSGLYCC 90
Score = 29.1 bits (65), Expect = 2.3
Identities = 17/79 (21%), Positives = 25/79 (31%), Gaps = 15/79 (18%)
Query: 211 DITLSC-YAGGYPNPSYEWFKEDYVQDRLVANLI-------DPLSDKRFTLSG----GN- 257
+TL C Y+ + W + LI R+ L G G+
Sbjct: 14 PVTLPCTYSTYRGITTTCWGRGQCPSSACQNTLIWTNGHRVTYQKSSRYNLKGHISEGDV 73
Query: 258 -LIINDPRQVEDRGSYHCK 275
L I + D G Y C+
Sbjct: 74 SLTIENS-VESDSGLYCCR 91
>2i24_N NEW antigen receptor PBLA8; immunoglobulin fold, immune system;
1.35A {Ginglymostoma cirratum} PDB: 2i25_N 2i27_N 2i26_N
Length = 121
Score = 32.7 bits (75), Expect = 0.15
Identities = 19/81 (23%), Positives = 31/81 (38%), Gaps = 19/81 (23%)
Query: 213 TLSCYAGGYPNPSYE--WFKE---------DYVQDRLVANLIDPLSDKRFTLSGGNLIIN 261
T++C W+++ R V + K F+L IN
Sbjct: 19 TINCVVRDSRCVLSTGYWYRKPPGSRNEESISDGGRYVETVNR--GSKSFSLR-----IN 71
Query: 262 DPRQVEDRGSYHCKASNKFGS 282
D V+D G+Y CK +++GS
Sbjct: 72 DL-TVKDSGTYRCKPESRYGS 91
Score = 29.6 bits (67), Expect = 1.9
Identities = 18/79 (22%), Positives = 30/79 (37%), Gaps = 14/79 (17%)
Query: 412 KAGDKVRLECVAFGYPVPSYN--WTRR--GSPLPRNA-----YFENFNRI-----LTIPN 457
+ G+ + + CV W R+ GS + Y E NR L I +
Sbjct: 13 ETGESLTINCVVRDSRCVLSTGYWYRKPPGSRNEESISDGGRYVETVNRGSKSFSLRIND 72
Query: 458 VKVEDQGEYICRASNDRSA 476
+ V+D G Y C+ + +
Sbjct: 73 LTVKDSGTYRCKPESRYGS 91
>3noi_A Natural cytotoxicity triggering receptor 3; immune system, innate
immunity, immunoglobulin-like I2 type natural killer
cell activation; HET: 1PG; 1.84A {Homo sapiens} PDB:
3pv6_B*
Length = 120
Score = 32.6 bits (74), Expect = 0.16
Identities = 16/80 (20%), Positives = 24/80 (30%), Gaps = 22/80 (27%)
Query: 414 GDKVRLEC----VAFGYPVPSYNWTR------------------RGSPLPRNAYFENFNR 451
G L C + S W R R +PL + + +
Sbjct: 22 GSSAFLPCSFNASQGRLAIGSVTWFRDEVVPGKEVRNGTPEFRGRLAPLASSRFLHDHQA 81
Query: 452 ILTIPNVKVEDQGEYICRAS 471
L I +V+ D Y+CR
Sbjct: 82 ELHIRDVRGHDASIYVCRVE 101
Score = 31.5 bits (71), Expect = 0.37
Identities = 18/102 (17%), Positives = 28/102 (27%), Gaps = 33/102 (32%)
Query: 602 EGGNVTIFCN----PEAAPKPKFVWKKDGNIIGSGGRRKIFENGN--------------- 642
EG + + C+ W +D +++
Sbjct: 21 EGSSAFLPCSFNASQGRLAIGSVTWFRDE----VVPGKEVRNGTPEFRGRLAPLASSRFL 76
Query: 643 ------LLISPVSRDDSGIYSCTATNVHGMDESKG---RLIV 675
L I V D+ IY C V G+ G RL+V
Sbjct: 77 HDHQAELHIRDVRGHDASIYVC-RVEVLGLGVGTGNGTRLVV 117
Score = 31.1 bits (70), Expect = 0.66
Identities = 16/78 (20%), Positives = 24/78 (30%), Gaps = 13/78 (16%)
Query: 212 ITLSCY----AGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLSGG--------NLI 259
L C G S WF+++ V + V N + L+ L
Sbjct: 25 AFLPCSFNASQGRLAIGSVTWFRDEVVPGKEVRNGTPEFRGRLAPLASSRFLHDHQAELH 84
Query: 260 INDPRQVEDRGSYHCKAS 277
I D + D Y C+
Sbjct: 85 IRDV-RGHDASIYVCRVE 101
>2wbj_D OB TCR; transmembrane, immune response, T cell receptor, MHC II,
MEM receptor, molecular mimicry, multiple sclerosis,
immune SYS autoimmunity; HET: NAG BMA MAN; 3.00A {Homo
sapiens}
Length = 279
Score = 34.1 bits (78), Expect = 0.17
Identities = 32/178 (17%), Positives = 63/178 (35%), Gaps = 43/178 (24%)
Query: 412 KAGDKVRLECVAFGYPVPSYNWTRR--GSPLPRNAYFENFNRI----------------- 452
K+G V++EC + + + W R+ L A ++
Sbjct: 37 KSGTSVKIECRSLDFQATTMFWYRQFPKQSLMLMATSNEGSKATYEQGVEKDKFLINHAS 96
Query: 453 -----LTIPNVKVEDQGEYICRASNDRSA-------------LESSVTISIQAEPNFTI- 493
LT+ + ED YIC ++ D ++ L + + P +
Sbjct: 97 LTLSTLTVTSAHPEDSSFYIC-SARDLTSGANNEQFFGPGTRLTVTEDLKNVFPPEVAVF 155
Query: 494 PLTDKHMDNQADLTWTCEA--FGVPDVTYSWFRNGELLNS--ETLPLEDQDRYFIQDN 547
++ + + T C A F V SW+ NG+ ++S T P +++ + D+
Sbjct: 156 EPSEAEISHTQKATLVCLATGFYPDHVELSWWVNGKEVHSGVSTDPQPLKEQPALNDS 213
Score = 28.7 bits (64), Expect = 8.7
Identities = 10/79 (12%), Positives = 24/79 (30%), Gaps = 15/79 (18%)
Query: 213 TLSCYAGGYPNPSYEWFKED---------YVQDRLVANLIDPLSDKRFTLSGGN-----L 258
+ C + + + W+++ + A + +F ++ + L
Sbjct: 43 KIECRSLDFQATTMFWYRQFPKQSLMLMATSNEGSKATYEQGVEKDKFLINHASLTLSTL 102
Query: 259 IINDPRQVEDRGSYHCKAS 277
+ ED Y C A
Sbjct: 103 TVTSA-HPEDSSFYICSAR 120
>2b5i_B Interleukin-2 receptor beta chain; four-helix bundle, fibronectin
domain, cytokine-cytokine REC complex; HET: NAG; 2.30A
{Homo sapiens} SCOP: b.1.2.1 b.1.2.1 PDB: 3qaz_B*
2erj_B*
Length = 214
Score = 33.6 bits (76), Expect = 0.19
Identities = 23/95 (24%), Positives = 33/95 (34%), Gaps = 8/95 (8%)
Query: 781 PGGVQVVEVHKTSATIQWTDGATNGRPITHYKIIART-NWNSTWFNVSEHVIGKEVDRYT 839
P +QVV V I W + H + ART + TW +
Sbjct: 109 PISLQVVHVETHRCNISWEISQASHYFERHLEFEARTLSPGHTWEEA------PLLTLKQ 162
Query: 840 GRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSP 874
++ +E L P + YEF+V G SP
Sbjct: 163 KQEWICLET-LTPDTQYEFQVRVKPLQGEFTTWSP 196
Score = 29.4 bits (65), Expect = 5.0
Identities = 12/76 (15%), Positives = 23/76 (30%), Gaps = 6/76 (7%)
Query: 900 GDLSISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETLKEYGNVGIAVVR--IPSEFYY 957
+ISWE ++ ++ T ++ L + P
Sbjct: 120 HRCNISWEISQASHYFERHLEFEARTLSPGHTWEEAPLLTLKQKQEWICLETLTP----D 175
Query: 958 TEYEVKVQAINDVGPG 973
T+YE +V+ G
Sbjct: 176 TQYEFQVRVKPLQGEF 191
>3lqz_A HLA class II histocompatibility antigen, DP alpha; MHC, immune,
disulfide bond, glycoprotein, immune respo membrane, MHC
II, transmembrane, immune system; HET: NAG NDG; 3.25A
{Homo sapiens}
Length = 181
Score = 33.2 bits (76), Expect = 0.23
Identities = 24/107 (22%), Positives = 38/107 (35%), Gaps = 14/107 (13%)
Query: 467 ICRASNDRSALESSVTISIQAEPNFTIPLTDKHMDNQADLTWTCEAFGV--PDVTYSWFR 524
I + + S+ T + P T+ + ++ T C P + +W
Sbjct: 65 ILNNNLNTLIQRSNHTQATNDPPEVTVFPK-EPVELGQPNTLICHIDKFFPPVLNVTWLC 123
Query: 525 NGELLN---SETLPLEDQDRYFIQDNVLTIRYLN--PERDPAMYQCR 566
NGEL+ +E+L L D F YL P + Y CR
Sbjct: 124 NGELVTEGVAESLFLPRTDYSF-----HKFHYLTFVPSAED-FYDCR 164
>3tgx_A Interleukin-21 receptor; class I cytokine, class I cytokine
receptor, sugarbridge, fibronectine domain, signaling,
cytokine-cytokine receptor; HET: MAN FUL NAG BMA FUC;
2.80A {Homo sapiens}
Length = 219
Score = 33.2 bits (75), Expect = 0.25
Identities = 19/78 (24%), Positives = 30/78 (38%), Gaps = 4/78 (5%)
Query: 900 GDLSISWEP---LPREKQNAPNIYYKIFWRKKNDTEFQSETLKEYGNVGIAVVRIPSEFY 956
G ISW P + Y++ +R + D S K +V +P EF
Sbjct: 113 GQYQISWRSDYEDPAFYMLKGKLQYELQYRNRGDPWAVSPRRKLISVDSRSVSLLPLEFR 172
Query: 957 -YTEYEVKVQAINDVGPG 973
+ YE++V+A G
Sbjct: 173 KDSSYELQVRAGPMPGSS 190
>2pnd_A V-SET and immunoglobulin domain containing 4; complement receptor,
IG-like domain, immune system; 1.00A {Mus musculus} PDB:
2icc_A 2ice_S* 2icf_S*
Length = 119
Score = 31.8 bits (72), Expect = 0.30
Identities = 16/91 (17%), Positives = 25/91 (27%), Gaps = 24/91 (26%)
Query: 596 SETYAGEGGNVTIFC--NPEAAPKPKFV-WKKDGN-------IIGSGGRRKIFE------ 639
G+V I C +P + V W + S G
Sbjct: 9 ESVTGTWKGDVKIQCIYDPLRGYRQVLVKWLVRHGSDSVTIFLRDSTGDHIQQAKYRGRL 68
Query: 640 --------NGNLLISPVSRDDSGIYSCTATN 662
+ +L I+ + DD Y+C T
Sbjct: 69 KVSHKVPGDVSLQINTLQMDDRNHYTCEVTW 99
Score = 28.8 bits (64), Expect = 3.2
Identities = 6/33 (18%), Positives = 13/33 (39%)
Query: 453 LTIPNVKVEDQGEYICRASNDRSALESSVTISI 485
L I ++++D+ Y C + + I
Sbjct: 80 LQINTLQMDDRNHYTCEVTWQTPDGNQVIRDKI 112
Score = 27.6 bits (61), Expect = 8.4
Identities = 17/84 (20%), Positives = 31/84 (36%), Gaps = 16/84 (19%)
Query: 211 DITLSCY---AGGYPNPSYEWFKE---DYVQDRLVANLIDPLSDKRF-------TLSGGN 257
D+ + C GY +W D V L + D + ++ G+
Sbjct: 18 DVKIQCIYDPLRGYRQVLVKWLVRHGSDSVTIFLRDSTGDHIQQAKYRGRLKVSHKVPGD 77
Query: 258 --LIINDPRQVEDRGSYHCKASNK 279
L IN + ++DR Y C+ + +
Sbjct: 78 VSLQINTLQ-MDDRNHYTCEVTWQ 100
>3bik_B Programmed cell death protein 1; CO-stimulation, receptor-ligand
complex, immunoglobulin-like sandwich, T cell, B cell,
programmed death; 2.65A {Mus musculus} SCOP: b.1.1.1
Length = 134
Score = 32.1 bits (73), Expect = 0.33
Identities = 19/84 (22%), Positives = 30/84 (35%), Gaps = 21/84 (25%)
Query: 602 EGGNVTIFCN----------------PEAAPKPKFVWKKDGNIIGSGGRRKIFENGN--- 642
EG N T C+ P + + + + R +I + N
Sbjct: 23 EGANATFTCSLSNWSEDLMLNWNRLSPSNQTEKQAAFSNGLSQPVQDARFQIIQLPNRHD 82
Query: 643 --LLISPVSRDDSGIYSCTATNVH 664
+ I R+DSGIY C A ++H
Sbjct: 83 FHMNILDTRRNDSGIYLCGAISLH 106
Score = 27.8 bits (62), Expect = 7.9
Identities = 16/91 (17%), Positives = 27/91 (29%), Gaps = 24/91 (26%)
Query: 240 ANLIDPLSDKRFTLSGG------NLIINDPRQVEDRGSYHCKASNKFGSIISESVQLAFG 293
L P+ D RF + ++ I D + D G Y C A + + ++
Sbjct: 61 NGLSQPVQDARFQIIQLPNRHDFHMNILDT-RRNDSGIYLCGAIS-----LHPKAKIEES 114
Query: 294 FIGEFNLKRAPEIGNQNWGKAMFCDPPTNYP 324
E + + T YP
Sbjct: 115 PGAELVVTERIL------------ETSTRYP 133
>2or7_A T-cell immunoglobulin and mucin domain- containing protein 2; beta
barrel, immunoglobulin fold, IGV domain, TIM, immune
system; 1.50A {Mus musculus}
Length = 115
Score = 31.5 bits (71), Expect = 0.34
Identities = 10/39 (25%), Positives = 15/39 (38%), Gaps = 2/39 (5%)
Query: 453 LTIPNVKVEDQGEYICR--ASNDRSALESSVTISIQAEP 489
LTI N V D G Y C ++ + + + P
Sbjct: 76 LTIENTVVGDGGPYCCVVEIPGAFHFVDYMLEVKPELVP 114
Score = 29.6 bits (66), Expect = 1.9
Identities = 17/105 (16%), Positives = 21/105 (20%), Gaps = 24/105 (22%)
Query: 595 ESETYAGEGGNVTIFC--NPEAAPKPKFVWKKDGNIIGSGGRRKIFENGN---------- 642
+ G VT+ C + W R I+ NG
Sbjct: 4 HTAVQGLAGHPVTLPCIYSTHLGGIVPMCWGLGECRHSYCIRSLIWTNGYTVTHQRNSRY 63
Query: 643 ------------LLISPVSRDDSGIYSCTATNVHGMDESKGRLIV 675
L I D G Y C L V
Sbjct: 64 QLKGNISEGNVSLTIENTVVGDGGPYCCVVEIPGAFHFVDYMLEV 108
Score = 28.4 bits (63), Expect = 5.2
Identities = 18/106 (16%), Positives = 26/106 (24%), Gaps = 16/106 (15%)
Query: 686 PPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMD----------LNELETPNI 735
+ A + L C T V W R +
Sbjct: 4 HTAVQGLAGHPVTLPCIYSTHLGGIVPMCWGLGECRHSYCIRSLIWTNGYTVTHQRNSRY 63
Query: 736 NIDGGL------LEITNASFADAGEYECVVKSTVGKISTKTTVIVE 775
+ G + L I N D G Y CVV+ + V+
Sbjct: 64 QLKGNISEGNVSLTIENTVVGDGGPYCCVVEIPGAFHFVDYMLEVK 109
>1kgc_D T-cell receptor alpha chain; LC13 clone, immune system; 1.50A {Homo
sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 1mi5_D 3kpr_D 3kps_D
3o6f_C 3t0e_C 3pqy_D 2esv_D 3dxa_D 3dx9_A
Length = 206
Score = 32.6 bits (74), Expect = 0.36
Identities = 17/121 (14%), Positives = 31/121 (25%), Gaps = 12/121 (9%)
Query: 549 LTIRYLNPERDPAMYQCRAKNQLKTRYSS---AQLRVLTLKPSFKKRPLESETYAGEGGN 605
L + D A+Y C T Y Q +LT+ P+ + +
Sbjct: 72 LILHRATLR-DAAVYYCILPLAGGTSYGKLTFGQGTILTVHPNIQNPDPAVYQLRDSKSS 130
Query: 606 VTIFC-----NPEAAPKPKFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTA 660
C + + K I + S V+ + ++C
Sbjct: 131 DKSVCLFTDFDSQTN---VSQSKDSDVYITDKTVLDMRSMDFKSNSAVAWSNKSDFACAN 187
Query: 661 T 661
Sbjct: 188 A 188
>3gsn_A RA14 TCR alpha chain (TRAV24, TRAJ49); HLA, human cytomegalovirus,
PP65, T cell receptor (TCR), immune response, public
response; 2.80A {Homo sapiens}
Length = 199
Score = 32.6 bits (74), Expect = 0.37
Identities = 17/118 (14%), Positives = 31/118 (26%), Gaps = 11/118 (9%)
Query: 549 LTIRYLNPERDPAMYQCRAKNQLKTRYSSAQLRVLTLKPSFKKRPLESETYAGEGGNVTI 608
L I+ PE D A Y C ++ LT+ P+ + +
Sbjct: 74 LYIKGSQPE-DSATYLCARNTG--NQFYFGTGTSLTVIPNIQNPDPAVYQLRDSKSSDKS 130
Query: 609 FC-----NPEAAPKPKFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTAT 661
C + + K I + S V+ + ++C
Sbjct: 131 VCLFTDFDSQTN---VSQSKDSDAYITDKTVLDMRSMDFKSNSAVAWSNKSDFACANA 185
>1ncn_A T lymphocyte activation antigen CD86; IG V, beta strands, immune
system; 2.70A {Homo sapiens} SCOP: b.1.1.1 PDB: 1i85_A
Length = 110
Score = 31.4 bits (71), Expect = 0.37
Identities = 6/21 (28%), Positives = 10/21 (47%)
Query: 742 LEITNASFADAGEYECVVKST 762
L + N D G Y+C++
Sbjct: 71 LRLHNLQIKDKGLYQCIIHHK 91
Score = 29.0 bits (65), Expect = 2.3
Identities = 8/40 (20%), Positives = 20/40 (50%), Gaps = 5/40 (12%)
Query: 453 LTIPNVKVEDQGEYICRASNDRS-----ALESSVTISIQA 487
L + N++++D+G Y C + + + + +S+ A
Sbjct: 71 LRLHNLQIKDKGLYQCIIHHKKPTGMIRIHQMNSELSVLA 110
Score = 27.9 bits (62), Expect = 6.0
Identities = 12/87 (13%), Positives = 31/87 (35%), Gaps = 24/87 (27%)
Query: 211 DITLSCYAGGYPNPSYE--------WFKEDYV--------QDRLVANLIDPLSDKRFTLS 254
L C + N + W ++ + +++ + + R +
Sbjct: 11 TADLPCQ---FANSQNQSLSELVVFWQDQENLVLNEVYLGKEKFDS--VHSKYMGRTSFD 65
Query: 255 GGN--LIINDPRQVEDRGSYHCKASNK 279
+ L +++ Q++D+G Y C +K
Sbjct: 66 SDSWTLRLHNL-QIKDKGLYQCIIHHK 91
>1wft_A 1700129L13RIK protein; FN3 domain, similar to HOST cell factor 2,
structural genomics, riken structural
genomics/proteomics initiative, RSGI; NMR {Mus musculus}
SCOP: b.1.2.1
Length = 123
Score = 31.4 bits (70), Expect = 0.44
Identities = 21/121 (17%), Positives = 34/121 (28%), Gaps = 12/121 (9%)
Query: 778 PGLPGGVQVVEVHKT--SATIQWTDGATNGRPITHYKI---IARTNWNSTWFNVSEHVIG 832
PG V + K + W + I Y I + I
Sbjct: 5 SSGPGAPSTVRISKNVDGIHLSWEPPTSPSGNILEYSAYLAIRTAQMQDNPSQLVFMRIY 64
Query: 833 KEVDRYTGRKEASIENVLVPWST---YEFKVIAGNELGYGEPSSPSPQYNTPADKPYQAP 889
+ + N + +++ F++ A NE GYG P+ Q P
Sbjct: 65 CGLKTSCTVTAGQLANAHIDYTSRPAIVFRISAKNEKGYG----PATQIRWLQGNSKSGP 120
Query: 890 S 890
S
Sbjct: 121 S 121
>2c4x_A Endoglucanase, ctcel9D-CEL44A; cellulase ctcel9D-CEL44A, PKD
domain, CBM44, carbohydrate BI module, beta-sandwich
proteins, cellulosome; 2.0A {Clostridium thermocellum}
PDB: 2c26_A
Length = 260
Score = 32.3 bits (73), Expect = 0.60
Identities = 16/95 (16%), Positives = 30/95 (31%), Gaps = 6/95 (6%)
Query: 748 SFADAGEYECVVKSTVGKISTKT---TVIVEGPPGLPGGVQVVEVHKTSATIQWTDGATN 804
+ GE +K G I T + P G + ++ + T W++ N
Sbjct: 141 TVTSEGEGTAELKLDGGTIVVPGTTMTFRIWIPSG--APIAAIQPYIMPHTPDWSEVLWN 198
Query: 805 GRPITHYKIIARTNWNSTWFNVSEHVIGKEVDRYT 839
Y ++ +WN + E V +
Sbjct: 199 STWKG-YTMVKTDDWNEITLTLPEDVDPTWPQQMG 232
>3up1_A Interleukin-7 receptor subunit alpha; cytokine receptor,
fibronectin type 3 fold, membrane and SOL glycosylation,
immune system; HET: NAG FUC NGA; 2.15A {Homo sapiens}
PDB: 3di3_B* 3di2_B*
Length = 223
Score = 32.1 bits (72), Expect = 0.62
Identities = 12/79 (15%), Positives = 32/79 (40%), Gaps = 4/79 (5%)
Query: 900 GDLSISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETLKEYGNVGIAVVRIPSEFYYTE 959
D +++ +K+ + + + +R++ D + + + ++
Sbjct: 128 NDFVVTFNTSHLQKKYVKVLMHDVAYRQEKDENKWTHVNLSSTKLTLLQRKLQP---AAM 184
Query: 960 YEVKVQAI-NDVGPGPESE 977
YE+KV++I + G SE
Sbjct: 185 YEIKVRSIPDHYFKGFWSE 203
>2gy5_A Angiopoietin-1 receptor; ligand-binding domain, transferase; HET:
NAG NDG; 2.90A {Homo sapiens} PDB: 2gy7_B*
Length = 423
Score = 32.8 bits (74), Expect = 0.62
Identities = 31/163 (19%), Positives = 54/163 (33%), Gaps = 9/163 (5%)
Query: 523 FRNGELLNSETLPLE-DQDRYFIQDNVLTIRYLNPERDPAMYQCRAKNQLKTRYSSAQLR 581
L+N PLE QD + + + Y C + +R
Sbjct: 37 RDFEALMNQHQDPLEVTQDVTREWAKKVVWKREKASKINGAYFCEGRV------RGEAIR 90
Query: 582 VLTLK-PSFKKRPLESETY-AGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFE 639
+ T+K + T +G NV I + V K+G+ I S R ++ +
Sbjct: 91 IRTMKMRQQASFLPATLTMTVDKGDNVNISFKKVLIKEEDAVIYKNGSFIHSVPRHEVPD 150
Query: 640 NGNLLISPVSRDDSGIYSCTATNVHGMDESKGRLIVLHGPSYY 682
+ + D+G+YS + + RLIV +
Sbjct: 151 ILEVHLPHAQPQDAGVYSARYIGGNLFTSAFTRLIVRRCEAQK 193
Score = 32.4 bits (73), Expect = 0.69
Identities = 18/109 (16%), Positives = 35/109 (32%), Gaps = 10/109 (9%)
Query: 651 DDSGIYSCTATNVHGMDESKGRLIVLHGPSYYEQLPPKITIAAHRNLQLRCSAHTEELLD 710
+G Y C R+ + LP +T+ + + S + +
Sbjct: 73 KINGAYFCEGRV----RGEAIRIRTMKMRQQASFLPATLTMTVDKGDNVNISFKKVLIKE 128
Query: 711 VAYIWTHNGVRIGNMDLNELETPNINIDGGLLEITNASFADAGEYECVV 759
+ NG I ++ +E+ D + + +A DAG Y
Sbjct: 129 EDAVIYKNGSFIHSVPRHEVP------DILEVHLPHAQPQDAGVYSARY 171
Score = 32.0 bits (72), Expect = 0.97
Identities = 11/61 (18%), Positives = 21/61 (34%), Gaps = 4/61 (6%)
Query: 718 NGVRIGNMDLNELETPNINIDGGLLEITNASFADAGEYECVVKSTVGKISTKTTVIVEGP 777
+G + D N + + I D+G + C V + G + + V+
Sbjct: 367 DGTVLHPKDFNH----TDHFSVAIFTIHRILPPDSGVWVCSVNTVAGMVEKPFNISVKVL 422
Query: 778 P 778
P
Sbjct: 423 P 423
Score = 28.9 bits (64), Expect = 8.5
Identities = 10/31 (32%), Positives = 15/31 (48%)
Query: 645 ISPVSRDDSGIYSCTATNVHGMDESKGRLIV 675
I + DSG++ C+ V GM E + V
Sbjct: 389 IHRILPPDSGVWVCSVNTVAGMVEKPFNISV 419
>3bia_X T-cell immunoglobulin and mucin domain- containing protein 4; beta
barrel, immunoglobulin fold, IGV domain, TIM,
glycoprotein; HET: TLA; 2.20A {Mus musculus} PDB:
3bi9_X* 3bib_X*
Length = 116
Score = 30.7 bits (69), Expect = 0.70
Identities = 9/37 (24%), Positives = 13/37 (35%)
Query: 453 LTIPNVKVEDQGEYICRASNDRSALESSVTISIQAEP 489
LTI N D G Y CR + + ++
Sbjct: 75 LTISNTNRGDSGVYCCRIEVPGWFNDVKKNVRLELRR 111
Score = 30.3 bits (68), Expect = 1.0
Identities = 20/88 (22%), Positives = 30/88 (34%), Gaps = 24/88 (27%)
Query: 595 ESETYAGEGGNVTIFCN--PEAAPKPKFVWKKDGN--------IIGSGGRRKIF------ 638
E G VT+ C+ + + W K ++ + G R I
Sbjct: 3 EDTIIGFLGQPVTLPCHYLSWSQSRNSMCWGKGSCPNSKCNAELLRTDGTRIISRKSTKY 62
Query: 639 ------ENGN--LLISPVSRDDSGIYSC 658
+ G L IS +R DSG+Y C
Sbjct: 63 TLLGKVQFGEVSLTISNTNRGDSGVYCC 90
>3bp6_A Programmed cell death protein 1; PD-1, PD-L2, complex,
costimulation, glycoprotein, immunoglo domain, membrane,
transmembrane, receptor; 1.60A {Mus musculus} PDB:
3rnk_A 3sbw_A 3bp5_A 1npu_A 3rnq_A
Length = 117
Score = 30.8 bits (70), Expect = 0.71
Identities = 18/84 (21%), Positives = 30/84 (35%), Gaps = 21/84 (25%)
Query: 602 EGGNVTIFCN----------------PEAAPKPKFVWKKDGNIIGSGGRRKIFENG---- 641
EG N T C+ P + + + + R +I +
Sbjct: 13 EGANATFTCSLSNWSEDLMLNWNRLSPSNQTEKQAAFSNGLSQPVQDARFQIIQLPNRHD 72
Query: 642 -NLLISPVSRDDSGIYSCTATNVH 664
++ I R+DSGIY C A ++H
Sbjct: 73 FHMNILDTRRNDSGIYLCGAISLH 96
>3q5y_A TCR N15 beta; IG, T cell receptor, antigen peptide/MHC, membrane,
immune S; HET: EPE; 1.90A {Mus musculus} PDB: 1nfd_B*
3q5t_A
Length = 240
Score = 31.9 bits (72), Expect = 0.74
Identities = 23/147 (15%), Positives = 57/147 (38%), Gaps = 22/147 (14%)
Query: 446 FENFNRILTIPNVKVEDQGEYICRASNDR---------SALESSVTISIQAEPNFTI-PL 495
F++++ + + +++ED Y C +S + L + P ++
Sbjct: 70 FDDYHSEMNMSALELEDSAMYFCASSLRWGDEQYFGPGTRLTVLEDLRNVTPPKVSLFEP 129
Query: 496 TDKHMDNQADLTWTCEA--FGVPDVTYSWFRNGELLNS----ETLPLEDQDRYFIQDNVL 549
+ + N+ T C A F V SW+ NG+ ++S + ++ + + + L
Sbjct: 130 SKAEIANKQKATLVCLARGFFPDHVELSWWVNGKEVHSGVSTDPQAYKESNYSYSLSSRL 189
Query: 550 TI---RYLNPERDPAMYQCRAKNQLKT 573
+ + NP ++C+ + +
Sbjct: 190 RVSATFWHNPRN---HFRCQVQFHGLS 213
>2oyp_A Hepatitis A virus cellular receptor 2; TIM-3, T-cell immunoglobulin
mucin, signaling protein; 1.95A {Mus musculus} PDB:
3kaa_A*
Length = 109
Score = 30.7 bits (69), Expect = 0.77
Identities = 14/82 (17%), Positives = 21/82 (25%), Gaps = 25/82 (30%)
Query: 602 EGGNVTIFCN---PEAAPKPKFVWKKDGNIIGSGGRRKIFENGN---------------- 642
G N + C+ P + W K + +
Sbjct: 8 VGKNAYLPCSYTLPTSGTLVPMCWGKGFCPWSQCTNELLRTDERNVTYQKSSRYQLKGDL 67
Query: 643 ------LLISPVSRDDSGIYSC 658
L+I V+ DD G Y C
Sbjct: 68 NKGDVSLIIKNVTLDDHGTYCC 89
Score = 30.7 bits (69), Expect = 0.77
Identities = 18/83 (21%), Positives = 25/83 (30%), Gaps = 28/83 (33%)
Query: 414 GDKVRLECVAFGYPVPSYN----WTRRGSPL-----------PRNAYFENFNRI------ 452
G L C + P W + P RN ++ +R
Sbjct: 9 GKNAYLPCS-YTLPTSGTLVPMCWGKGFCPWSQCTNELLRTDERNVTYQKSSRYQLKGDL 67
Query: 453 ------LTIPNVKVEDQGEYICR 469
L I NV ++D G Y CR
Sbjct: 68 NKGDVSLIIKNVTLDDHGTYCCR 90
Score = 28.4 bits (63), Expect = 4.7
Identities = 7/19 (36%), Positives = 10/19 (52%)
Query: 742 LEITNASFADAGEYECVVK 760
L I N + D G Y C ++
Sbjct: 74 LIIKNVTLDDHGTYCCRIQ 92
>4dzb_B Vbeta2 (MAIT T cell receptor); immune system; 1.70A {Homo sapiens}
PDB: 1ymm_E* 3o4l_E* 3o6f_D 3t0e_D 1ktk_E 3mfg_B 2ij0_E
Length = 246
Score = 31.7 bits (72), Expect = 0.99
Identities = 33/175 (18%), Positives = 61/175 (34%), Gaps = 39/175 (22%)
Query: 412 KAGDKVRLECVAFGYPVPSYNWTRR--GSPLPRNAYFENFNRI----------------- 452
K+G V++EC + + + W R+ L A ++
Sbjct: 14 KSGTSVKIECRSLDFQATTMFWYRQFPKQSLMLMATSNEGSKATYEQGVEKDKFLINHAS 73
Query: 453 -----LTIPNVKVEDQGEYICRASNDRSALE--------SSVTISIQ--AEPNFTI-PLT 496
LT+ + ED YIC A E +V ++ P + +
Sbjct: 74 LTLSTLTVTSAHPEDSSFYICSARTSGDFGEQFFGPGTRLTVLEDLKNVFPPEVAVFEPS 133
Query: 497 DKHMDNQADLTWTCEA--FGVPDVTYSWFRNGELLNS--ETLPLEDQDRYFIQDN 547
+ + + T C A F V SW+ NG+ ++S T P +++ + D+
Sbjct: 134 EAEISHTQKATLVCLATGFYPDHVELSWWVNGKEVHSGVCTDPQPLKEQPALNDS 188
>3to4_D NKT vbeta2 (mouse variable domain, human constant; mouse CD1D,
mouse NKT, immune system; HET: AGH NAG; 3.10A {Homo
sapiens}
Length = 253
Score = 31.8 bits (72), Expect = 1.0
Identities = 28/174 (16%), Positives = 51/174 (29%), Gaps = 38/174 (21%)
Query: 412 KAGDKVRLECVAFGYPVPSYNW-------------------TRRGSPLPRNAYF--ENFN 450
G V L C+ P +W + LP Y +
Sbjct: 14 PRGQAVNLRCILKNSQYPWMSWYQQDLQKQLQWLFTLRSPGDKEVKSLPGADYLATRVTD 73
Query: 451 RILTIPNVKVEDQGEYICRASNDRSALES--------SVTISIQ----AEPNFTI-PLTD 497
L + + C +S D +T+ P + ++
Sbjct: 74 TELRLQVANMSQGRTLYCTSSADHWTNTGQLYFGEGSKLTVLEDLKNVFPPEVAVFEPSE 133
Query: 498 KHMDNQADLTWTCEA--FGVPDVTYSWFRNGELLNS--ETLPLEDQDRYFIQDN 547
+ + T C A F V SW+ NG+ ++S T P +++ + D+
Sbjct: 134 AEISHTQKATLVCLATGFYPDHVELSWWVNGKEVHSGVSTDPQPLKEQPALNDS 187
Score = 29.1 bits (65), Expect = 5.8
Identities = 15/115 (13%), Positives = 31/115 (26%), Gaps = 28/115 (24%)
Query: 603 GGNVTIFCN---------------PEAAPKPKFVWKKDGNIIGSG--GRRKIFENGN--- 642
G V + C + + F + G+ G +
Sbjct: 16 GQAVNLRCILKNSQYPWMSWYQQDLQKQLQWLFTLRSPGDKEVKSLPGADYLATRVTDTE 75
Query: 643 LLISPVSRDDSGIYSCTATNVHGMDESKG------RLIVLHGPSYYEQLPPKITI 691
L + + CT++ H + + +L VL PP++ +
Sbjct: 76 LRLQVANMSQGRTLYCTSSADHWTNTGQLYFGEGSKLTVLEDLK--NVFPPEVAV 128
>2dle_A Receptor-type tyrosine-protein phosphatase ETA; protein-tyrosine
phosphatase ETA, R-PTP-ETA, HPTP ETA, protein-tyrosine
phosphatase receptor type J; NMR {Homo sapiens}
Length = 104
Score = 30.0 bits (67), Expect = 1.1
Identities = 20/108 (18%), Positives = 27/108 (25%), Gaps = 24/108 (22%)
Query: 778 PGLPGGVQVVEVHKTSATIQWTDGATNGRPITHYKIIARTNWNSTWFNVSEHVIGKEVDR 837
V V + TS T+ W N +S+ + HV G+
Sbjct: 8 AIQVFDVTAVNISATSLTLIWK---------------VSDNESSSNYTYKIHVAGETDSS 52
Query: 838 Y--TGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSS------PSPQ 877
A I L + Y V G P P P
Sbjct: 53 NLNVSEPRAVIPG-LRSSTFYNITVCPVLGDIEGTPGFLQVHTPPVPS 99
>3cxe_C Granulocyte-macrophage colony-stimulating factor subunit alpha;
GM-CSF, receptor complex, dodecamer, disease mutation,
glyco membrane; HET: NAG BMA; 3.30A {Homo sapiens}
Length = 120
Score = 30.4 bits (68), Expect = 1.1
Identities = 12/66 (18%), Positives = 24/66 (36%), Gaps = 1/66 (1%)
Query: 902 LSISWE-PLPREKQNAPNIYYKIFWRKKNDTEFQSETLKEYGNVGIAVVRIPSEFYYTEY 960
+ W+ P +K + + Y++ +KN L PS ++
Sbjct: 33 CLVRWKQPRTYQKLSYLDFQYQLDVHRKNTQPGTENLLINVSGDLENRYNFPSSEPRAKH 92
Query: 961 EVKVQA 966
VK++A
Sbjct: 93 SVKIRA 98
>2nms_A CMRF35-like-molecule 1; IG-superfamily, IG-V, NKP44-like, myeloid
IG-like receptor, inhibitory receptor, myelo-monocytic
cells; 2.60A {Homo sapiens}
Length = 124
Score = 30.3 bits (68), Expect = 1.1
Identities = 13/100 (13%), Positives = 32/100 (32%), Gaps = 22/100 (22%)
Query: 602 EGGNVTIFC--NPEAAPKPKF-----VWKKDGNIIGSGGRRKIFENG------------- 641
E G++T+ C K+ +W+ ++ + G + +
Sbjct: 16 ERGSLTVQCVYRSGWETYLKWWCRGAIWRDCKILVKTSGSEQEVKRDRVSIKDNQKNRTF 75
Query: 642 NLLISPVSRDDSGIYSCTATNVHGMDESKG-RLIVLHGPS 680
+ + + + D+ Y C G D ++ + P
Sbjct: 76 TVTMEDLMKTDADTYWC-GIEKTGNDLGVTVQVTIDPAPV 114
Score = 29.9 bits (67), Expect = 1.6
Identities = 8/44 (18%), Positives = 17/44 (38%)
Query: 453 LTIPNVKVEDQGEYICRASNDRSALESSVTISIQAEPNFTIPLT 496
+T+ ++ D Y C + L +V ++I P +
Sbjct: 77 VTMEDLMKTDADTYWCGIEKTGNDLGVTVQVTIDPAPVTQEETS 120
Score = 28.4 bits (63), Expect = 5.4
Identities = 7/40 (17%), Positives = 15/40 (37%)
Query: 742 LEITNASFADAGEYECVVKSTVGKISTKTTVIVEGPPGLP 781
+ + + DA Y C ++ T + V ++ P
Sbjct: 77 VTMEDLMKTDADTYWCGIEKTGNDLGVTVQVTIDPAPVTQ 116
>1qfo_A Protein (sialoadhesin); immunoglobulin superfamily, carbohydrate
binding, immune system; HET: SIA GAL GLC; 1.85A {Mus
musculus} SCOP: b.1.1.1 PDB: 1od7_A* 1oda_A* 1od9_A*
1qfp_A 2bve_A* 1url_A*
Length = 119
Score = 30.2 bits (68), Expect = 1.2
Identities = 8/23 (34%), Positives = 11/23 (47%)
Query: 453 LTIPNVKVEDQGEYICRASNDRS 475
L + ++K ED G Y R S
Sbjct: 81 LLLKDLKPEDSGTYNFRFEISDS 103
Score = 29.0 bits (65), Expect = 2.6
Identities = 17/86 (19%), Positives = 28/86 (32%), Gaps = 26/86 (30%)
Query: 599 YAGEGGNVTIFCN---PEAAPKPKFV---WKKDGN-----IIGSGGRRKIFE-------- 639
G + I C P P + W D + +I SG + + +
Sbjct: 11 QGLSGSCLLIPCIFSYPADVPVSNGITAIWYYDYSGKRQVVIHSGDPKLVDKRFRGRAEL 70
Query: 640 -------NGNLLISPVSRDDSGIYSC 658
NLL+ + +DSG Y+
Sbjct: 71 MGNMDHKVCNLLLKDLKPEDSGTYNF 96
Score = 27.9 bits (62), Expect = 7.0
Identities = 22/121 (18%), Positives = 37/121 (30%), Gaps = 21/121 (17%)
Query: 475 SALE-SSVTISIQAEP-NFTIPLTDKHMDNQADLTWTCEAFGVPDVTYSWFRNGELLNSE 532
L S + I P F+ P D + N W + G V +
Sbjct: 11 QGLSGSCLLI-----PCIFSYP-ADVPVSNGITAIWYYDYSGKRQVVIHSGDPKLV---- 60
Query: 533 TLPLEDQDRYFIQDNV------LTIRYLNPERDPAMYQCRAKNQLKTRYSSAQLRVLTLK 586
+ R + N+ L ++ L PE D Y R + R+ + +T+
Sbjct: 61 --DKRFRGRAELMGNMDHKVCNLLLKDLKPE-DSGTYNFRFEISDSNRWLDVKGTTVTVT 117
Query: 587 P 587
Sbjct: 118 T 118
>1q8m_A Triggering receptor expressed on myeloid cells 1; V-type IG-like
domain, immunoglobulin-like, immune system receptor;
HET: GSH; 2.60A {Homo sapiens} SCOP: b.1.1.1
Length = 127
Score = 30.2 bits (68), Expect = 1.3
Identities = 12/78 (15%), Positives = 23/78 (29%), Gaps = 16/78 (20%)
Query: 212 ITLSCYAGGYPNPSYE--WFK-------EDYVQDRLVANLIDPLSDKRFTLSGGN----- 257
+ + C S + W + + P+ R L +
Sbjct: 22 LDVKCDYTLEKFASSQKAWQIIRDGEMPKTLACTERPSKNSHPVQVGRIILEDYHDHGLL 81
Query: 258 -LIINDPRQVEDRGSYHC 274
+ + + + VED G Y C
Sbjct: 82 RVRMVNLQ-VEDSGLYQC 98
>1iak_A MHC class II I-AK; histocompatibility antigen, peptide complex,
histocompa antigen I-AK; HET: NAG; 1.90A {Mus musculus}
SCOP: b.1.1.2 d.19.1.1 PDB: 1d9k_C* 1k2d_A* 1jl4_A
2pxy_C 1u3h_C 2z31_C 1muj_A* 1lnu_A* 3c5z_C 3c60_C
3c6l_C 3rdt_C 2iad_A 1iao_A 1es0_A 3cup_A* 3mbe_A*
1f3j_A*
Length = 199
Score = 30.9 bits (70), Expect = 1.3
Identities = 23/117 (19%), Positives = 40/117 (34%), Gaps = 18/117 (15%)
Query: 461 EDQGEY----ICRASNDRSALESSVTISIQAEPNFTIPLTDKHMDNQADLTWTCEAFGV- 515
E QG + + + S+ T + P T+ + T C +
Sbjct: 59 EPQGGLQNIATGKHNLEILTKRSNSTPATNEAPQATVFPK-SPVLLGQPNTLICFVDNIF 117
Query: 516 -PDVTYSWFRNGELLN---SETLPLEDQDRYFIQDNVLTIRYLN--PERDPAMYQCR 566
P + +W RN + + ET ++D F + YL P D +Y C+
Sbjct: 118 PPVINITWLRNSKSVTDGVYETSFFVNRDYSF-----HKLSYLTFIPSDD-DIYDCK 168
>1ypz_E T cell receptor delta, beta-2-microglobulin; H2-T22 protein, T cell
receptor delta, immune system; HET: NAG MAN FUC; 3.40A
{Mus musculus} SCOP: b.1.1.1 b.1.1.2
Length = 207
Score = 31.1 bits (70), Expect = 1.3
Identities = 14/102 (13%), Positives = 35/102 (34%), Gaps = 11/102 (10%)
Query: 453 LTIPNVKVEDQGEYICRASNDRSALESS-----------VTISIQAEPNFTIPLTDKHMD 501
L I + ++ED G Y C A + ++++ + + M
Sbjct: 73 LHIRDAQLEDSGTYFCAADTWHISEGYELGTDKLVFGQGTQVTVEPKSQPPAKPSVFIMK 132
Query: 502 NQADLTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYF 543
N ++ + F +VT S + +++ + + +
Sbjct: 133 NGTNVACLVKDFYPKEVTISLRSSKKIVEFDPAIVISPSGKY 174
Score = 28.4 bits (63), Expect = 9.5
Identities = 26/197 (13%), Positives = 53/197 (26%), Gaps = 35/197 (17%)
Query: 602 EGGNVTIFCN--------------PEAAPKPKFVWKKDGNIIGSGGRRKIFENGN----- 642
EG + + CN + ++ +G + F++
Sbjct: 15 EGTDSALRCNFTTTMRSVQWFRQNSRGSLI--SLFYLASGTKENGRLKSAFDSKERRYST 72
Query: 643 LLISPVSRDDSGIYSCTATNVHGMDESKG--RLIVLHGPSYYEQLPPKITIAAHRNLQLR 700
L I +DSG Y C A H + + +V + P A ++
Sbjct: 73 LHIRDAQLEDSGTYFCAADTWHISEGYELGTDKLVFGQGTQVTVEPKSQPPAKPSVFIMK 132
Query: 701 CSAHTEELL------DVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEITNASFADAGE 754
+ L+ +V + + I+ G + + D+
Sbjct: 133 NGTNVACLVKDFYPKEVTISLRSSKKIV-----EFDPAIVISPSGKYSAVKLGQYGDSNS 187
Query: 755 YECVVKSTVGKISTKTT 771
C V+ + T
Sbjct: 188 VTCSVQHN-SETVHSTD 203
>3nfj_J T cell receptor beta chain; immunoglobulin family, immune system;
2.68A {Homo sapiens} PDB: 3hg1_E
Length = 245
Score = 31.0 bits (70), Expect = 1.4
Identities = 22/112 (19%), Positives = 43/112 (38%), Gaps = 17/112 (15%)
Query: 453 LTIPNVKVEDQGEYICRASNDRSALESS--------VTISIQ----AEPNFTI-PLTDKH 499
L+ + + D G Y+C S A + +T+ P + ++
Sbjct: 76 LSSKKLLLSDSGFYLCAWSVSVGAGVPTIYFGEGSWLTVVEDLNKVFPPEVAVFEPSEAE 135
Query: 500 MDNQADLTWTCEA--FGVPDVTYSWFRNGELLNS--ETLPLEDQDRYFIQDN 547
+ + T C A F V SW+ NG+ ++S T P +++ + D+
Sbjct: 136 ISHTQKATLVCLATGFFPDHVELSWWVNGKEVHSGVCTDPQPLKEQPALNDS 187
>2aty_A Complement receptor chimeric conjugate CR2-IG; immunoglobulin fold,
antibody, immune system; NMR {Homo sapiens}
Length = 376
Score = 31.5 bits (70), Expect = 1.5
Identities = 23/110 (20%), Positives = 46/110 (41%), Gaps = 14/110 (12%)
Query: 453 LTIPNVKVEDQGEYICRASNDRSALESSVTISI-------QAEPNFTIPLTDKHMDNQAD 505
L I + + E+ CR ++ +A + + +I +A +TIP + M
Sbjct: 235 LPIMHQDWLNGKEFKCRVNS--AAFPAPIEKTISKTKGRPKAPQLYTIPPPKEQMAKD-K 291
Query: 506 LTWTC--EAFGVPDVTYSWFRNGELLNSE--TLPLEDQDRYFIQDNVLTI 551
++ TC F D+T W NG+ + T P+ + + + + L +
Sbjct: 292 VSLTCMITDFFPEDITVEWQWNGQPAENYKNTQPIMNTNESYFVYSKLNV 341
>3jts_B Beta-2-microglobulin; alpha helix, beta sheet, beta barrel, immune
response, MHC I membrane, transmembrane, disease
mutation; 2.80A {Homo sapiens}
Length = 119
Score = 29.7 bits (67), Expect = 1.9
Identities = 14/71 (19%), Positives = 22/71 (30%), Gaps = 5/71 (7%)
Query: 477 LESSVTISIQAEPNFTIPLTDKHMDNQADLTWTCEAFGV--PDVTYSWFRNGELLN--SE 532
L S +IQ P + +N C G D+ +NGE +
Sbjct: 13 LSLSGLEAIQRTPKIQVYSR-HPAENGKSNFLNCYVSGFHPSDIEVDLLKNGERIEKVEH 71
Query: 533 TLPLEDQDRYF 543
+ +D F
Sbjct: 72 SDLSFSKDWSF 82
>3s96_B 3B5H10 FAB light chain; huntingtin, immune system; 1.90A {Mus
musculus} PDB: 2qhr_L 3ffd_B 4dcq_A
Length = 218
Score = 30.3 bits (69), Expect = 2.1
Identities = 27/113 (23%), Positives = 47/113 (41%), Gaps = 15/113 (13%)
Query: 453 LTIPNVKVEDQGEYICRASNDRSALES--------SVTISIQ--AEPNFTI--PLTDKHM 500
L+I N++ ED+ YIC D + VT+ Q + P T+ P +++
Sbjct: 77 LSISNIQPEDEAIYIC-GVGDTIKEQFVYVFGGGTKVTVLGQPKSTPTLTVFPPSSEELK 135
Query: 501 DNQADLTWTCEAFGVPDVTYSWFRNGELLNS--ETLPLEDQDRYFIQDNVLTI 551
+N+A L F VT +W NG + +T + F+ + L +
Sbjct: 136 ENKATLVCLISNFSPSGVTVAWKANGTPITQGVDTSNPTKEGNKFMASSFLHL 188
>3r08_E T-cell surface glycoprotein CD3 epsilon chain; antibody, T-cell
receptor, signalling, immune SY; 4.10A {Cricetulus
migratorius}
Length = 82
Score = 28.5 bits (63), Expect = 2.2
Identities = 14/70 (20%), Positives = 23/70 (32%), Gaps = 17/70 (24%)
Query: 210 NDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVEDR 269
+ L+C + + +W K L K +L++ D +VED
Sbjct: 15 TSVELTCPL--DSDENLKWEKNG-----------QELPQK----HDKHLVLQDFSEVEDS 57
Query: 270 GSYHCKASNK 279
G Y C
Sbjct: 58 GYYVCYTPAS 67
Score = 28.5 bits (63), Expect = 2.7
Identities = 13/61 (21%), Positives = 24/61 (39%), Gaps = 9/61 (14%)
Query: 603 GGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGNLLISPVSR-DDSGIYSCTAT 661
G +V + C + W+K+G + + +L++ S +DSG Y C
Sbjct: 14 GTSVELTCPLD--SDENLKWEKNGQELPQK------HDKHLVLQDFSEVEDSGYYVCYTP 65
Query: 662 N 662
Sbjct: 66 A 66
>1bec_A 14.3.D T cell antigen receptor; T cell receptor; 1.70A {Mus
musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1jck_A 1l0x_A
1sbb_A 1l0y_A 3c6l_B 1mwa_B* 1g6r_B* 1tcr_B* 2ckb_B
2q86_B* 1lp9_F 2j8u_F 2jcc_F 2uwe_F 3mbe_D* 1d9k_B*
2aq3_A 3mc0_A 3byt_A 3bzd_A ...
Length = 238
Score = 30.7 bits (69), Expect = 2.2
Identities = 23/137 (16%), Positives = 48/137 (35%), Gaps = 24/137 (17%)
Query: 453 LTIPNVKVEDQGEYICRASNDRSA-----------LESSVTISIQAEPNFTI-PLTDKHM 500
L + Y C + R + L + P ++ + +
Sbjct: 74 LILELATPSQTSVYFCASGGGRGSYAEQFFGPGTRLTVLEDLRQVTPPKVSLFEPSKAEI 133
Query: 501 DNQADLTWTCEAFGV-PD-VTYSWFRNGELLNS----ETLPLEDQDRYFIQDNVLTI--- 551
N+ T C A G PD V SW+ NG+ ++S + ++ + + + L +
Sbjct: 134 ANKQKATLVCLARGFFPDHVELSWWVNGKEVHSGVSTDPQAYKESNYSYCLSSRLRVSAT 193
Query: 552 RYLNPERDPAMYQCRAK 568
+ NP ++C+ +
Sbjct: 194 FWHNPRN---HFRCQVQ 207
>1xt5_A Variable region-containing chitin-binding protein 3; innate
immunity, VCBP, primordial antigen receptor, florida
lancelet, amphioxus; 1.15A {Branchiostoma floridae}
Length = 135
Score = 29.8 bits (66), Expect = 2.2
Identities = 7/31 (22%), Positives = 13/31 (41%)
Query: 453 LTIPNVKVEDQGEYICRASNDRSALESSVTI 483
L + +V +D G Y C+ + E +
Sbjct: 94 LRLTHVHPQDGGRYWCQVAQWSIRTEFGLDA 124
>2pkd_A SLAM family member 5; signaling lymphocyte activation molecule,
IGV, immunoglobulin variable, IGC, immunoglobulin
constant, signaling protein; 2.04A {Homo sapiens}
Length = 111
Score = 29.1 bits (65), Expect = 2.4
Identities = 15/90 (16%), Positives = 31/90 (34%), Gaps = 9/90 (10%)
Query: 406 TFPEAPKAGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYFENF-NRI--------LTIP 456
TFP + +V++ V + N+ RI L I
Sbjct: 18 TFPVNIQEPRQVKIIAWTSKTSVAYVTPGDSETAPVVTVTHRNYYERIHALGPNYNLVIS 77
Query: 457 NVKVEDQGEYICRASNDRSALESSVTISIQ 486
++++ED G+Y + ++ ++Q
Sbjct: 78 DLRMEDAGDYKADINTQADPYTTTKRYNLQ 107
Score = 28.7 bits (64), Expect = 3.1
Identities = 9/76 (11%), Positives = 23/76 (30%), Gaps = 15/76 (19%)
Query: 714 IWTHNGVRIGNMDLNELETPNINI-------------DGGLLEITNASFADAGEYECVV- 759
WT + P + + L I++ DAG+Y+ +
Sbjct: 33 AWTSKTSVAYVTPGDSETAPVVTVTHRNYYERIHALGPNYNLVISDLRMEDAGDYKADIN 92
Query: 760 -KSTVGKISTKTTVIV 774
++ + + + +
Sbjct: 93 TQADPYTTTKRYNLQI 108
>1qgc_4 Protein (immunoglobulin); virus-antibody complex, icosahedral
virus, virus-immune SYST complex; 30.00A {Mus musculus}
SCOP: i.6.1.1
Length = 438
Score = 30.6 bits (70), Expect = 2.7
Identities = 13/72 (18%), Positives = 21/72 (29%), Gaps = 13/72 (18%)
Query: 366 YSCNVQSKVSDTGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPEAPKAGDKVRLECVAFG 425
Y+C K S + F + + K G ++L C A G
Sbjct: 196 YTCEATHKTSTSPIVKSFNR--NECEVMLVE---------SGGGLVKPGGSLKLSCTASG 244
Query: 426 YPVPSY--NWTR 435
+ +W R
Sbjct: 245 FIFNRCAMSWVR 256
>3c5j_A HLA class II histocompatibility antigen, DR alpha; HLA, MHC class
II, glycoprotein, immune response, membrane,
transmembrane, GTP-binding, methylation; HET: NAG; 1.80A
{Homo sapiens} PDB: 1d5x_A* 1d5z_A* 1d6e_A* 1d5m_A
1fyt_A* 1hqr_A 1j8h_A* 1r5i_A 1seb_A 1zgl_A 2seb_A*
1fv1_A* 2ipk_A* 3pdo_A 3pgc_A 3pgd_A 1ymm_A* 1aqd_A
2g9h_A* 1h15_A ...
Length = 181
Score = 29.7 bits (67), Expect = 3.0
Identities = 18/82 (21%), Positives = 31/82 (37%), Gaps = 6/82 (7%)
Query: 467 ICRASNDRSALESSVTISIQAEPNFTIPLTDKHMDNQADLTWTCEAFGV--PDVTYSWFR 524
+ +A+ + S+ T P T+ + + C P V +W R
Sbjct: 65 VDKANLEIMTKRSNYTPITNVPPEVTVLTNSPVELREPN-VLICFIDKFTPPVVNVTWLR 123
Query: 525 NGELLN---SETLPLEDQDRYF 543
NG+ + SET+ L +D F
Sbjct: 124 NGKPVTTGVSETVFLPREDHLF 145
>3k1f_M Transcription initiation factor IIB; RNA polymerase II, TFIIB,
transcription factor, DNA-binding, DNA-directed RNA
polymerase; 4.30A {Saccharomyces cerevisiae}
Length = 197
Score = 29.6 bits (66), Expect = 3.2
Identities = 12/44 (27%), Positives = 16/44 (36%), Gaps = 8/44 (18%)
Query: 434 TRRGSPLPRNAYFENFNRILTIPNVK------VED--QGEYICR 469
TR N N +LT P K VE +G+ +C
Sbjct: 3 TRESIDKRAGRRGPNLNIVLTCPECKVYPPKIVERFSEGDVVCA 46
>1k5n_B Beta-2-microglobulin, light chain; MHC(major histocompatibility
complex), HLA(human leukocyte A immune system; 1.09A
{Homo sapiens} SCOP: b.1.1.2 PDB: 1a9b_B 1b0g_B 1b0r_B
1bd2_B 1cg9_B 1a9e_B 1duy_B 1eey_B 1eez_B 1efx_B 1gzp_B*
1gzq_B* 1hhg_B 1hhh_B 1hhi_B 1hhj_B 1hhk_B 1i1f_B 1i1y_B
1duz_B* ...
Length = 100
Score = 28.4 bits (64), Expect = 3.4
Identities = 12/63 (19%), Positives = 20/63 (31%), Gaps = 5/63 (7%)
Query: 485 IQAEPNFTIPLTDKHMDNQADLTWTCEAFGV--PDVTYSWFRNGELLN--SETLPLEDQD 540
IQ P + + +N C G D+ +NGE + + +D
Sbjct: 2 IQRTPKIQV-YSRHPAENGKSNFLNCYVSGFHPSDIEVDLLKNGERIEKVEHSDLSFSKD 60
Query: 541 RYF 543
F
Sbjct: 61 WSF 63
>3pl6_D MBP peptide / T-cell receptor beta chain chimera; TCR-MHC complex,
immunoglobulin fold, immune receptor, membr immune
system; HET: NAG; 2.55A {Homo sapiens}
Length = 268
Score = 30.0 bits (67), Expect = 3.5
Identities = 35/207 (16%), Positives = 63/207 (30%), Gaps = 55/207 (26%)
Query: 412 KAGDKVRLECVAFGYPVPSYNW----------------------TRRGSPLPRNAYF--- 446
+ G V L C P+ + S LP + +F
Sbjct: 39 EKGKYVELRC----DPISGHTALYWYRQSLGQGPEFLIYFQGTGAADDSGLPNDRFFAVR 94
Query: 447 -ENFNRILTIPNVKVEDQGEYICRASNDRSA--------LESSVTISIQAEPNFTI-PLT 496
E L I + D Y+C S L + P + +
Sbjct: 95 PEGSVSTLKIQRTERGDSAVYLCATSALGDTQYFGPGTRLTVLEDLKNVFPPEVAVFEPS 154
Query: 497 DKHMDNQADLTWTCEA--FGVPDVTYSWFRNGELLNS--ETLPLEDQDRYFIQDN----- 547
+ + + T C A F V SW+ NG+ ++S T P +++ + D+
Sbjct: 155 EAEISHTQKATLVCLATGFYPDHVELSWWVNGKEVHSGVCTDPQPLKEQPALNDSRYSLS 214
Query: 548 -VLTI---RYLNPERDPAMYQCRAKNQ 570
L + + NP ++C+ +
Sbjct: 215 SRLRVSATFWQNPR---NHFRCQVQFY 238
>4ei6_B Vbeta16 XV19 type II natural killer T cell recept variable domain,
human constant...; natural killer T cell receptor,
immune system; 1.60A {Mus musculus} PDB: 4ei5_D 4elk_B
4elm_F* 2esv_E 3ffc_E 3utt_E 3utp_E* 3uts_E 3qjf_B
3qjh_B 3qiw_D* 3qiu_D
Length = 245
Score = 29.6 bits (66), Expect = 4.5
Identities = 22/110 (20%), Positives = 40/110 (36%), Gaps = 15/110 (13%)
Query: 453 LTIPNVKVEDQGEYICRASNDRSA----------LESSVTISIQAEPNFTI-PLTDKHMD 501
L I +ED Y C +S + L + P + ++ +
Sbjct: 78 LKIQPTALEDSAVYFCASSFWGAYAEQFFGPGTRLTVLEDLKNVFPPEVAVFEPSEAEIS 137
Query: 502 NQADLTWTCEA--FGVPDVTYSWFRNGELLNS--ETLPLEDQDRYFIQDN 547
+ T C A F V SW+ NG+ ++S T P +++ + D+
Sbjct: 138 HTQKATLVCLATGFYPDHVELSWWVNGKEVHSGVCTDPQPLKEQPALNDS 187
>3s9j_A Member of DUF4221 family; 6-bladed beta-propeller, structural
genomics, joint center F structural genomics, JCSG; HET:
MSE; 1.75A {Bacteroides vulgatus}
Length = 369
Score = 29.8 bits (66), Expect = 4.5
Identities = 22/199 (11%), Positives = 48/199 (24%), Gaps = 12/199 (6%)
Query: 333 DYFPNFVEEDKRVFVSYDGALYFSALEQIDAGNYSCNVQSKVSDTGRNGPFFPLKVFPHS 392
F E K + + D N + + TG NG P
Sbjct: 29 KSMFQFEENGKEYLHFENTQKSLYDIVIFDIENQQIAKRIPLHKTGPNGLPAVFGSRPSP 88
Query: 393 NFQQLKFPNNFPKTFPEAPKAGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYFENFNRI 452
+ Q + N G+ +R +YN+ ++ +N
Sbjct: 89 DSQYILVAQNNISRLSSINSQGEIIR-----------NYNFQTPEGRFTPLSFGSYYNAP 137
Query: 453 LTIPNVKVEDQGEYICRASNDRSALESSVTISIQAEPNFTIPLTDKHMDNQADLTWTCEA 512
I + + + E + + + S + + +
Sbjct: 138 AFIKDSCIFLRQEILKPDMKKEDWPRTHMFASQDLRTGEVKWIPIFYPPIFKEEYDNIAG 197
Query: 513 FGVPDVTYSWFRNGELLNS 531
Y+ ++ L+
Sbjct: 198 GYGFSYDYN-YKESRLVCG 215
>3kg5_A B-cell antigen receptor complex-associated protei chain; CD79B,
IG-beta, BCR, immunoglobulin domain, protein binding;
3.20A {Homo sapiens}
Length = 134
Score = 28.5 bits (64), Expect = 4.9
Identities = 17/99 (17%), Positives = 32/99 (32%), Gaps = 30/99 (30%)
Query: 603 GGNVTIFC---------------NPEAAPKPKFVWKKDGNIIGSGGRRKIFENGN---LL 644
G V + C + P+ + + G + S N + L
Sbjct: 33 GFTVKMHCYMNSASGNVSWLWKQEMDENPQQ--LKLEKGRMEESQ-------NESLATLT 83
Query: 645 ISPVSRDDSGIYSCTATNVHGMDESKG---RLIVLHGPS 680
I + +D+GIY C + + +G L V+ +
Sbjct: 84 IQGIRFEDNGIYFCQQKCNNTSEVYQGCGTELRVMGFST 122
>3mbe_C I-AG7; T cell receptor, histocompatability antigen, MHC class II, I
immune system; HET: NAG; 2.89A {Mus musculus}
Length = 229
Score = 29.2 bits (65), Expect = 5.8
Identities = 20/112 (17%), Positives = 35/112 (31%), Gaps = 25/112 (22%)
Query: 602 EGGNVTIFCNPEAA------------PKPKFVWKKDGNIIGSGGRRKIFENGN----LLI 645
EG + + CN + ++ +G + F + L I
Sbjct: 15 EGADSGLRCNFSTTMKSVQWFQQNHRGRLITLFYLAQGTKENGRLKSTFNSKERYSTLHI 74
Query: 646 SPVSRDDSGIYSCTATNVHGMDE---SKG-RLIVL-----HGPSYYEQLPPK 688
+DSG Y C A + ++ G L V P+ Y+ P+
Sbjct: 75 KDAQLEDSGTYFCAAEDGGSGNKLIFGTGTLLSVKPNIQNPEPAVYQLKDPR 126
>2ptt_B Natural killer cell receptor 2B4; CD244, CD48, NK cell receptor,
X-RAY, immune system; 1.63A {Mus musculus} PDB: 2ptu_A
1z2k_A
Length = 112
Score = 28.2 bits (62), Expect = 5.9
Identities = 13/59 (22%), Positives = 25/59 (42%), Gaps = 2/59 (3%)
Query: 715 WTHNGVRIGNMDLNELETPNINIDGGLLEITNASFADAGEYECVVKSTVGKISTKTTVI 773
W ++G N+ ++ + L I +A D+G Y + +T GK+ K +
Sbjct: 52 WYNDGPSWSNVSFSD--IYGFDYGDFALSIKSAKLQDSGHYLLEITNTGGKVCNKNFQL 108
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide-
binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Length = 207
Score = 29.0 bits (66), Expect = 6.6
Identities = 11/15 (73%), Positives = 11/15 (73%)
Query: 666 MDESKGRLIVLHGPS 680
MD KG LIVL GPS
Sbjct: 1 MDNEKGLLIVLSGPS 15
>1zox_A CLM-1; IG-superfamily, IG-V, NKP44-like, myeloid IG-like receptor,
structural genomics, PSI, protein structure initiative;
2.10A {Mus musculus}
Length = 113
Score = 27.8 bits (62), Expect = 6.9
Identities = 9/37 (24%), Positives = 18/37 (48%)
Query: 453 LTIPNVKVEDQGEYICRASNDRSALESSVTISIQAEP 489
+T+ ++++ D G Y C + VT++I P
Sbjct: 76 VTMEDLRMSDAGIYWCGITKGGLDPMFKVTVNIGPVP 112
>1smo_A Triggering receptor expressed on myeloid cells 1; activating
receptors, TREM-1, innate immune system receptor,
system; HET: TLA; 1.47A {Homo sapiens} SCOP: b.1.1.1
Length = 119
Score = 27.9 bits (62), Expect = 7.4
Identities = 14/96 (14%), Positives = 30/96 (31%), Gaps = 18/96 (18%)
Query: 212 ITLSCYAGGYPNPSYE--WFK-------EDYVQDRLVANLIDPLSDKRFTLSGGN----- 257
+ + C S + W + + P+ R L +
Sbjct: 17 LDVKCDYTLEKFASSQKAWQIIRDGEMPKTLACTERPSKNSHPVQVGRIILEDYHDHGLL 76
Query: 258 -LIINDPRQVEDRGSYHC--KASNKFGSIISESVQL 290
+ + + + VED G Y C K ++ + ++L
Sbjct: 77 RVRMVNLQ-VEDSGLYQCVIYQPPKEPHMLFDRIRL 111
>1hkf_A NKP44, NK cell activating receptor; natural cytotoxicity receptor,
immunoglobulin domain; 2.2A {Homo sapiens} SCOP: b.1.1.1
Length = 122
Score = 28.0 bits (62), Expect = 7.5
Identities = 14/78 (17%), Positives = 26/78 (33%), Gaps = 21/78 (26%)
Query: 602 EGGNVTIFC--NPEAAPKPKFVWKKDG------NIIGSGGRRKIFENG------------ 641
G +T+ C P + K W K+ ++ S R +
Sbjct: 24 AGQTLTVRCQYPPTGSLYEKKGWCKEASALVCIRLVTSSKPRTMAWTSRFTIWDDPDAGF 83
Query: 642 -NLLISPVSRDDSGIYSC 658
+ ++ + +DSG Y C
Sbjct: 84 FTVTMTDLREEDSGHYWC 101
>3og6_B Interleukin 28 receptor, alpha (interferon, lambd receptor);
helical bundle, fibronectin type III domain,
beta-sandwich, signaling, membrane; HET: BMA NAG; 2.10A
{Homo sapiens} PDB: 3og4_B*
Length = 226
Score = 28.9 bits (64), Expect = 7.5
Identities = 10/78 (12%), Positives = 22/78 (28%), Gaps = 3/78 (3%)
Query: 900 GDLSISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETLKEYGNVGIAVVRIPSEFYYTE 959
LS + ++ Y++ + K+ +TL G V
Sbjct: 119 EILSANATYQLPPCMPPLDLKYEVAFWKEGAGN---KTLFPVTPHGQPVQITLQPAASEH 175
Query: 960 YEVKVQAINDVGPGPESE 977
+ + + I S+
Sbjct: 176 HCLSARTIYTFSVPKYSK 193
>2ghw_B Anti-SARS SCFV antibody, 80R; S protein, neutralizing antibody,
virus/viral protein/antibiotic complex; 2.30A {Homo
sapiens} SCOP: b.1.1.1 b.1.1.1
Length = 247
Score = 28.8 bits (65), Expect = 7.6
Identities = 18/84 (21%), Positives = 27/84 (32%), Gaps = 22/84 (26%)
Query: 404 PKTFPEAPKAGDKVRLECVAFGYPVPSYNWTRR--GSPLPRNAYFENFNRI--------- 452
P T +P G++ L C A + W ++ G Y + R
Sbjct: 142 PATLSLSP--GERATLSCRASQSVRSNLAWYQQKPGQAPRPLIYDAS-TRATGIPDRFSG 198
Query: 453 --------LTIPNVKVEDQGEYIC 468
LTI ++ ED Y C
Sbjct: 199 SGSGTDFTLTISRLEPEDFAVYYC 222
>3gbl_A BETA2-microglobulin; immune response, immunoglobulin domain, MHC I,
secreted, immune system; 2.10A {Ctenopharyngodon idella}
Length = 97
Score = 27.3 bits (61), Expect = 7.6
Identities = 11/55 (20%), Positives = 23/55 (41%), Gaps = 10/55 (18%)
Query: 516 PDVTYSWFRNGELLN--SETLPLEDQDRYFIQDNVLTIRYLN--PERDPAMYQCR 566
PD++ +NGE++ +T ++ F + ++ PE+ Y C
Sbjct: 33 PDISIELLKNGEVIADAQQTDLAFEKGWQF-----HLTKSVSFKPEKS-DEYSCS 81
>2eys_A NKT15; natural killer T cell receptor, immune system; 2.21A {Homo
sapiens} PDB: 2eyr_A 2eyt_A 3huj_E* 3tyf_A 3tzv_A*
3sdx_E* 2po6_C* 2cde_A 3to4_C*
Length = 210
Score = 28.5 bits (63), Expect = 8.2
Identities = 25/184 (13%), Positives = 51/184 (27%), Gaps = 31/184 (16%)
Query: 602 EGGNVTIFCNPEAAPKPKFVW---------------------KKDGNIIGSGGRRKIFEN 640
EG N T+ CN +P W K +G + +
Sbjct: 17 EGKNCTLQCNYTVSPFSNLRWYKQDTGRGPVSLTIMTFSENTKSNGRY--TATLDADTKQ 74
Query: 641 GNLLISPVSRDDSGIYSCTATNVHGMDESKGRLIVLHGPSYYEQLPPKITIAAHRNLQLR 700
+L I+ DS Y C ++ + G + P I QLR
Sbjct: 75 SSLHITASQLSDSASYICVVSDRGSTLGR-----LYFGRGTQLTVWPDIQNPDPAVYQLR 129
Query: 701 CSAHTEELLDVA---YIWTHNGVRIGNMDLNELETPNINIDGGLLEITNASFADAGEYEC 757
S +++ + + T+ + + + ++++ ++ C
Sbjct: 130 DSKSSDKSVCLFTDFDSQTNVSQSKDSDVYITDKCVLDMRSMDFKSNSAVAWSNKSDFAC 189
Query: 758 VVKS 761
Sbjct: 190 ANAF 193
>3qib_D 2B4 beta chain; IG domain, immune system; HET: NAG FUC BMA; 2.70A
{Mus musculus}
Length = 270
Score = 28.8 bits (64), Expect = 8.2
Identities = 26/149 (17%), Positives = 52/149 (34%), Gaps = 27/149 (18%)
Query: 446 FENFNRILTIPNVKVEDQGEYICRASNDRSA----------LESSVTISIQAEPNFTI-P 494
N L I + + D Y+C +S + S L + P +
Sbjct: 96 PSNSPCSLEIQSSEAGDSALYLCASSLNWSQDTQYFGPGTRLLVLEDLKNVFPPEVAVFE 155
Query: 495 LTDKHMDNQADLTWTC--EAFGVPDVTYSWFRNGELLNS--ETLPLEDQDRYFIQDN--- 547
++ + + T C F V SW+ NG+ ++S T P +++ + D+
Sbjct: 156 PSEAEISHTQKATLVCLATGFYPDHVELSWWVNGKEVHSGVCTDPQPLKEQPALNDSRYA 215
Query: 548 ---VLTI---RYLNPERDPAMYQCRAKNQ 570
L + + NP ++C+ +
Sbjct: 216 LSSRLRVSATFWQNPR---NHFRCQVQFY 241
>2ywz_A NEW antigen receptor variable domain; IG VNAR, immune system; 2.21A
{Orectolobus maculatus} PDB: 2ywy_A
Length = 111
Score = 27.7 bits (62), Expect = 8.4
Identities = 21/86 (24%), Positives = 35/86 (40%), Gaps = 16/86 (18%)
Query: 404 PKTFPEAPKAGDKVRLECVAFGYPVPSY--NWTRR--GSPLPRNA-----YFENFNR--- 451
P+T + G+ + ++CV + W R GS + Y E ++
Sbjct: 7 PRTITKET--GESLTIKCVLKDHSCGLSSTTWYRTQLGSTNEKTISIGGRYDETVDKGSK 64
Query: 452 --ILTIPNVKVEDQGEYICRASNDRS 475
L I +++VED G Y C+A S
Sbjct: 65 SFSLRISDLRVEDSGTYKCQADYSPS 90
>1xed_A Polymeric-immunoglobulin receptor; IG-like fold, immune system;
1.90A {Homo sapiens} SCOP: b.1.1.1
Length = 117
Score = 27.5 bits (61), Expect = 8.4
Identities = 20/99 (20%), Positives = 28/99 (28%), Gaps = 22/99 (22%)
Query: 602 EGGNVTIFCNPEAAPKPKFV---------WKKDGNIIGSGGRRKIFENG----------- 641
EG +V+I C + +I S G G
Sbjct: 14 EGNSVSITCYYPPTSVNRHTRKYWCRQGARGGCITLISSEGYVSSKYAGRANLTNFPENG 73
Query: 642 --NLLISPVSRDDSGIYSCTATNVHGMDESKGRLIVLHG 678
+ I+ +S+DDSG Y C L VL
Sbjct: 74 TFVVNIAQLSQDDSGRYKCGLGINSRGLSFDVSLEVLEH 112
>3k7b_A Protein A33; C-type lectin-like domain, homodimer, poxvirus, EEV,
EV, VIR protein; 2.10A {Vaccinia virus WR}
Length = 96
Score = 27.1 bits (59), Expect = 8.9
Identities = 14/44 (31%), Positives = 19/44 (43%), Gaps = 1/44 (2%)
Query: 36 YRDSCYRFVKSPLKTRNDAKLNCKSLDSDLANVNDADEHGFIMY 79
Y+ SCY + +DA NC + S L N +D I Y
Sbjct: 16 YQGSCYILHSDY-QMFSDAAANCTAESSTLPNKSDVMITWLIDY 58
>2p24_A H-2 class II histocompatibility antigen, A-U ALPH; MHC, I-AU,
immunoglobulin fold, MBP, immune system; 2.15A {Mus
musculus} SCOP: b.1.1.2 d.19.1.1
Length = 236
Score = 28.7 bits (64), Expect = 9.7
Identities = 27/154 (17%), Positives = 47/154 (30%), Gaps = 26/154 (16%)
Query: 420 ECVAFGYPVPSYNWTRRGSPLPRNAYFENFNRILTIPNVKVEDQGEYICRASNDRSALES 479
E W LP A +F+ + N+ + + S
Sbjct: 64 ELFYVDLDKKETIWM-----LPEFAQLRSFDPQGGLQNIAT-------GKHNLGVLTKRS 111
Query: 480 SVTISIQAEPNFTIPLTDKHMDNQADLTWTCEAFGV--PDVTYSWFRNGELLN---SETL 534
+ T + P T+ + T C + P + +W RN + + ET
Sbjct: 112 NSTPATNEAPQATVFPK-SPVLLGQPNTLICFVDNIFPPVINITWLRNSKSVADGVYETS 170
Query: 535 PLEDQDRYFIQDNVLTIRYLN--PERDPAMYQCR 566
++D F + YL P D +Y C+
Sbjct: 171 FFVNRDYSF-----HKLSYLTFIPSDD-DIYDCK 198
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.317 0.136 0.423
Gapped
Lambda K H
0.267 0.0526 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 15,393,443
Number of extensions: 948780
Number of successful extensions: 6302
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3703
Number of HSP's successfully gapped: 1546
Length of query: 978
Length of database: 6,701,793
Length adjustment: 103
Effective length of query: 875
Effective length of database: 3,825,930
Effective search space: 3347688750
Effective search space used: 3347688750
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 62 (28.1 bits)