BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy12061
(626 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1CFB|A Chain A, Crystal Structure Of Tandem Type Iii Fibronectin Domains
From Drosophila Neuroglian At 2.0 Angstroms
Length = 205
Score = 79.0 bits (193), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 57/196 (29%), Positives = 91/196 (46%), Gaps = 15/196 (7%)
Query: 196 ATIQWTDGATNGRPITHYKIIARTNWN-STWFNVSEHVIGKEVDRYTGRKEASIENVLVP 254
A I W N PI HY I T++ ++W E V ++S + P
Sbjct: 21 AEIHWEQQGDNRSPILHYTIQFNTSFTPASWDAAYEKV---------PNTDSSFVVQMSP 71
Query: 255 WSTYEFKVIAGNELGYGEPSSPSPQYNTPADKPYQAPSRXXXXXXXXXDLSISWEPLPRE 314
W+ Y F+VIA N++G PS+ S T D P++ P +L ISW P+P
Sbjct: 72 WANYTFRVIAFNKIGASPPSAHSDSCTTQPDVPFKNPDNVVGQGTEPNNLVISWTPMPEI 131
Query: 315 KQNAPNIYYKIFWRKK-NDTEFQSETLKEYGNVGIAVVRIPSEFYYTEYEVKVQAINDVG 373
+ NAPN +Y + W++ +++ + ++ I + P+ + +Y +KV AIND G
Sbjct: 132 EHNAPNFHYYVSWKRDIPAAAWENNNIFDWRQNNIVIADQPT---FVKYLIKVVAINDRG 188
Query: 374 -PGPESEVVTIFSAED 388
+E V +S ED
Sbjct: 189 ESNVAAEEVVGYSGED 204
Score = 39.3 bits (90), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 33/125 (26%), Positives = 53/125 (42%), Gaps = 11/125 (8%)
Query: 359 YTEYEVKVQAINDVGPGPES-EVVTIFSAEDMPQVAPQGVFSRGFNSTAINVTWNPIELI 417
+ Y +V A N +G P S + + D+P P V +G + ++W P+ I
Sbjct: 72 WANYTFRVIAFNKIGASPPSAHSDSCTTQPDVPFKNPDNVVGQGTEPNNLVISWTPMPEI 131
Query: 418 RENIRGRLIGHRIKYWKEDNPEETAVYYLSRTTRNWA---LIVGLQPD-TKYYVKVMAYN 473
N H WK D P A + + +W +++ QP KY +KV+A N
Sbjct: 132 EHNAPNF---HYYVSWKRDIP---AAAWENNNIFDWRQNNIVIADQPTFVKYLIKVVAIN 185
Query: 474 NAGEG 478
+ GE
Sbjct: 186 DRGES 190
>pdb|3JXA|A Chain A, Immunoglobulin Domains 1-4 Of Mouse Cntn4
pdb|3JXA|B Chain B, Immunoglobulin Domains 1-4 Of Mouse Cntn4
Length = 383
Score = 66.6 bits (161), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 51/168 (30%), Positives = 76/168 (45%), Gaps = 12/168 (7%)
Query: 2 AGEGGNVTIFCNPEAAPKPKFVWKK-DGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSC 60
A +G V + C P P +W++ DG I RR NG L I ++D+G Y C
Sbjct: 216 AEKGTTVKLECFALGNPVPTILWRRADGKPIARKARRHK-SNGILEIPNFQQEDAGSYEC 274
Query: 61 TATNVHGMDESKGRLIVLHGPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHN 120
A N G + +KG+L P++ Q+ I +A ++ C A+ Y W N
Sbjct: 275 VAENSRGKNVAKGQLTFYAQPNWV-QIINDIHVAMEESVFWECKANGRP--KPTYRWLKN 331
Query: 121 GVRIGNMDLNELETPNINIDGGLLEITNASFADAGEYECVVKSTVGKI 168
G + D I I+ G L IT + +DAG Y+CV ++ G I
Sbjct: 332 GDPLLTRD-------RIQIEQGTLNITIVNLSDAGMYQCVAENKHGVI 372
Score = 48.9 bits (115), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 45/174 (25%), Positives = 72/174 (41%), Gaps = 27/174 (15%)
Query: 4 EGGNVTIFCNPEAAPKPKFVWKKDGNI--IGSGGRRKIFENGNLLISPVSRDDSGIYSCT 61
E V + C + PKP WK +G IG R + + L+ +P D+G Y C
Sbjct: 21 EEKKVKLSCEVKGNPKPHIRWKLNGTDVDIGMDFRYSVVDGSLLINNPNKTQDAGTYQCI 80
Query: 62 ATNVHGMDESK-GRLIVLHGPSYYEQLPPKITIAAHRNLQLRCS--AHTEELLDVAYIWT 118
ATN G S+ +L + ++ + +++ + + L C H+ EL +Y W
Sbjct: 81 ATNSFGTIVSREAKLQFAYLENFKTRTRSTVSVRRGQGMVLLCGPPPHSGEL---SYAWI 137
Query: 119 HNGVRIGNMDLNELETPN-------INIDGGLLEITNASFADAGEYECVVKSTV 165
N E P+ ++ + G L I +D G Y CVV +TV
Sbjct: 138 FN------------EYPSYQDNRRFVSQETGNLYIAKVEKSDVGNYTCVVTNTV 179
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 37/67 (55%), Gaps = 1/67 (1%)
Query: 12 CNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTATNVHGMDES 71
C PKP + W K+G+ + + R +I E G L I+ V+ D+G+Y C A N HG+ S
Sbjct: 316 CKANGRPKPTYRWLKNGDPLLTRDRIQI-EQGTLNITIVNLSDAGMYQCVAENKHGVIFS 374
Query: 72 KGRLIVL 78
L V+
Sbjct: 375 SAELSVI 381
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 39/138 (28%), Positives = 59/138 (42%), Gaps = 20/138 (14%)
Query: 41 ENGNLLISPVSRDDSGIYSCTATNVHGMDESKG--RLIVLHGPSYYEQLPPKI------T 92
E GNL I+ V + D G Y+C TN + G ++L + PKI T
Sbjct: 154 ETGNLYIAKVEKSDVGNYTCVVTNTVTNHKVLGPPTPLILRNDGVMGEYEPKIEVQFPET 213
Query: 93 IAAHR--NLQLRCSAHTEELLDVAYIWTH-NGVRIGNMDLNELETPNINIDGGLLEITNA 149
+ A + ++L C A + + +W +G I + G+LEI N
Sbjct: 214 VPAEKGTTVKLECFALGNPVPTI--LWRRADGKPIA-------RKARRHKSNGILEIPNF 264
Query: 150 SFADAGEYECVVKSTVGK 167
DAG YECV +++ GK
Sbjct: 265 QQEDAGSYECVAENSRGK 282
>pdb|3KLD|A Chain A, Ptprg Cntn4 Complex
Length = 384
Score = 66.2 bits (160), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 51/168 (30%), Positives = 76/168 (45%), Gaps = 12/168 (7%)
Query: 2 AGEGGNVTIFCNPEAAPKPKFVWKK-DGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSC 60
A +G V + C P P +W++ DG I RR NG L I ++D+G Y C
Sbjct: 217 AEKGTTVKLECFALGNPVPTILWRRADGKPIARKARRHK-SNGILEIPNFQQEDAGSYEC 275
Query: 61 TATNVHGMDESKGRLIVLHGPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHN 120
A N G + +KG+L P++ Q+ I +A ++ C A+ Y W N
Sbjct: 276 VAENSRGKNVAKGQLTFYAQPNWV-QIINDIHVAMEESVFWECKANGRP--KPTYRWLKN 332
Query: 121 GVRIGNMDLNELETPNINIDGGLLEITNASFADAGEYECVVKSTVGKI 168
G + D I I+ G L IT + +DAG Y+CV ++ G I
Sbjct: 333 GDPLLTRD-------RIQIEQGTLNITIVNLSDAGMYQCVAENKHGVI 373
Score = 48.9 bits (115), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 45/174 (25%), Positives = 72/174 (41%), Gaps = 27/174 (15%)
Query: 4 EGGNVTIFCNPEAAPKPKFVWKKDGNI--IGSGGRRKIFENGNLLISPVSRDDSGIYSCT 61
E V + C + PKP WK +G IG R + + L+ +P D+G Y C
Sbjct: 22 EEKKVKLSCEVKGNPKPHIRWKLNGTDVDIGMDFRYSVVDGSLLINNPNKTQDAGTYQCI 81
Query: 62 ATNVHGMDESK-GRLIVLHGPSYYEQLPPKITIAAHRNLQLRCS--AHTEELLDVAYIWT 118
ATN G S+ +L + ++ + +++ + + L C H+ EL +Y W
Sbjct: 82 ATNSFGTIVSREAKLQFAYLENFKTRTRSTVSVRRGQGMVLLCGPPPHSGEL---SYAWI 138
Query: 119 HNGVRIGNMDLNELETPN-------INIDGGLLEITNASFADAGEYECVVKSTV 165
N E P+ ++ + G L I +D G Y CVV +TV
Sbjct: 139 FN------------EYPSYQDNRRFVSQETGNLYIAKVEKSDVGNYTCVVTNTV 180
Score = 47.4 bits (111), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 37/67 (55%), Gaps = 1/67 (1%)
Query: 12 CNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTATNVHGMDES 71
C PKP + W K+G+ + + R +I E G L I+ V+ D+G+Y C A N HG+ S
Sbjct: 317 CKANGRPKPTYRWLKNGDPLLTRDRIQI-EQGTLNITIVNLSDAGMYQCVAENKHGVIFS 375
Query: 72 KGRLIVL 78
L V+
Sbjct: 376 SAELSVI 382
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 39/138 (28%), Positives = 59/138 (42%), Gaps = 20/138 (14%)
Query: 41 ENGNLLISPVSRDDSGIYSCTATNVHGMDESKG--RLIVLHGPSYYEQLPPKI------T 92
E GNL I+ V + D G Y+C TN + G ++L + PKI T
Sbjct: 155 ETGNLYIAKVEKSDVGNYTCVVTNTVTNHKVLGPPTPLILRNDGVMGEYEPKIEVQFPET 214
Query: 93 IAAHR--NLQLRCSAHTEELLDVAYIWTH-NGVRIGNMDLNELETPNINIDGGLLEITNA 149
+ A + ++L C A + + +W +G I + G+LEI N
Sbjct: 215 VPAEKGTTVKLECFALGNPVPTI--LWRRADGKPIA-------RKARRHKSNGILEIPNF 265
Query: 150 SFADAGEYECVVKSTVGK 167
DAG YECV +++ GK
Sbjct: 266 QQEDAGSYECVAENSRGK 283
>pdb|1UEN|A Chain A, Solution Structure Of The Third Fibronectin Iii Domain Of
Human Kiaa0343 Protein
Length = 125
Score = 61.2 bits (147), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 35/101 (34%), Positives = 53/101 (52%), Gaps = 8/101 (7%)
Query: 387 EDMPQVAPQGVFSRGFNSTAINVTWNPIELIRENIRGRLIGHRIKYWKEDNPEETAVYYL 446
ED+P VAP V NST V W+P+ L ++IRG L G+RI YWK + + ++
Sbjct: 11 EDLPMVAPGNVRVNVVNSTLAEVHWDPVPL--KSIRGHLQGYRIYYWKTQSSSKRNRRHI 68
Query: 447 SRT------TRNWALIVGLQPDTKYYVKVMAYNNAGEGPES 481
+ ++ ++ GL+P + Y + V N GEGP S
Sbjct: 69 EKKILTFQGSKTHGMLPGLEPFSHYTLNVRVVNGKGEGPAS 109
>pdb|2IEP|A Chain A, Crystal Structure Of Immunoglobulin-Like Domains 1 And 2
Of The Receptor Tyrosine Kinase Musk
pdb|2IEP|B Chain B, Crystal Structure Of Immunoglobulin-Like Domains 1 And 2
Of The Receptor Tyrosine Kinase Musk
Length = 192
Score = 60.5 bits (145), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 55/166 (33%), Positives = 74/166 (44%), Gaps = 12/166 (7%)
Query: 9 TIFCNPEAAPKPKFVWKKDGNIIGS-GGRRKIFENGNLL-ISPVSRDDSGIYSCTATN-V 65
T C E+ P+P+ W ++ +I R I ENG LL I V D GIY CTA N V
Sbjct: 26 TFMCAVESYPQPEISWTRNKILIKLFDTRYSIRENGQLLTILSVEDSDDGIYCCTANNGV 85
Query: 66 HGMDESKGRLIVLHGPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIG 125
G ES G L V P P + I L C+ V++I + +R
Sbjct: 86 GGAVESCGALQVKMKPKITRP-PINVKIIEGLKAVLPCTTMGNPKPSVSWIKGDSALR-E 143
Query: 126 NMDLNELETPNINIDGGLLEITNASFADAGEYECVVKSTVGKISTK 171
N + LE+ G L I N DAG+Y CV K+++G +K
Sbjct: 144 NSRIAVLES-------GSLRIHNVQKEDAGQYRCVAKNSLGTAYSK 182
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 32/69 (46%)
Query: 4 EGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTAT 63
EG + C PKP W K + + R + E+G+L I V ++D+G Y C A
Sbjct: 114 EGLKAVLPCTTMGNPKPSVSWIKGDSALRENSRIAVLESGSLRIHNVQKEDAGQYRCVAK 173
Query: 64 NVHGMDESK 72
N G SK
Sbjct: 174 NSLGTAYSK 182
>pdb|1CVS|C Chain C, Crystal Structure Of A Dimeric Fgf2-Fgfr1 Complex
pdb|1CVS|D Chain D, Crystal Structure Of A Dimeric Fgf2-Fgfr1 Complex
pdb|1FQ9|C Chain C, Crystal Structure Of A Ternary Fgf2-Fgfr1-Heparin Complex
pdb|1FQ9|D Chain D, Crystal Structure Of A Ternary Fgf2-Fgfr1-Heparin Complex
Length = 225
Score = 58.9 bits (141), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 46/176 (26%), Positives = 78/176 (44%), Gaps = 18/176 (10%)
Query: 8 VTIFCNPEAAPKPKFVWKKDGNIIGS----GGRRKIFENGNLLISPVSRDDSGIYSCTAT 63
V C P+P W K+G GG + + ++++ V D G Y+C
Sbjct: 34 VKFKCPSSGTPQPTLRWLKNGKEFKPDHRIGGYKVRYATWSIIMDSVVPSDKGNYTCIVE 93
Query: 64 NVHGMDESKGRLIVL----HGPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTH 119
N +G +L V+ H P LP T+A N++ C +++ + ++ H
Sbjct: 94 NEYGSINHTYQLDVVERSPHRPILQAGLPANKTVALGSNVEFMCKVYSDPQPHIQWL-KH 152
Query: 120 ---NGVRIGNMDL---NELETPNINI---DGGLLEITNASFADAGEYECVVKSTVG 166
NG +IG +L L+T +N + +L + N SF DAGEY C+ +++G
Sbjct: 153 IEVNGSKIGPDNLPYVQILKTAGVNTTDKEMEVLHLRNVSFEDAGEYTCLAGNSIG 208
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 36/90 (40%), Gaps = 16/90 (17%)
Query: 5 GGNVTIFCNPEAAPKPKFVWKK----DGNIIG------------SGGRRKIFENGNLLIS 48
G NV C + P+P W K +G+ IG +G E L +
Sbjct: 130 GSNVEFMCKVYSDPQPHIQWLKHIEVNGSKIGPDNLPYVQILKTAGVNTTDKEMEVLHLR 189
Query: 49 PVSRDDSGIYSCTATNVHGMDESKGRLIVL 78
VS +D+G Y+C A N G+ L VL
Sbjct: 190 NVSFEDAGEYTCLAGNSIGLSHHSAWLTVL 219
>pdb|3OJV|C Chain C, Crystal Structure Of Fgf1 Complexed With The Ectodomain Of
Fgfr1c Exhibiting An Ordered Ligand
Specificity-Determining Betac'-Betae Loop
pdb|3OJV|D Chain D, Crystal Structure Of Fgf1 Complexed With The Ectodomain Of
Fgfr1c Exhibiting An Ordered Ligand
Specificity-Determining Betac'-Betae Loop
Length = 226
Score = 58.5 bits (140), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 46/176 (26%), Positives = 78/176 (44%), Gaps = 18/176 (10%)
Query: 8 VTIFCNPEAAPKPKFVWKKDGNIIGS----GGRRKIFENGNLLISPVSRDDSGIYSCTAT 63
V C P+P W K+G GG + + ++++ V D G Y+C
Sbjct: 35 VKFKCPSSGTPQPTLRWLKNGKEFKPDHRIGGYKVRYATWSIIMDSVVPSDKGNYTCIVE 94
Query: 64 NVHGMDESKGRLIVL----HGPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTH 119
N +G +L V+ H P LP T+A N++ C +++ + ++ H
Sbjct: 95 NEYGSINHTYQLDVVERSPHRPILQAGLPANKTVALGSNVEFMCKVYSDPQPHIQWL-KH 153
Query: 120 ---NGVRIGNMDL---NELETPNINI---DGGLLEITNASFADAGEYECVVKSTVG 166
NG +IG +L L+T +N + +L + N SF DAGEY C+ +++G
Sbjct: 154 IEVNGSKIGPDNLPYVQILKTAGVNTTDKEMEVLHLRNVSFEDAGEYTCLAGNSIG 209
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 36/90 (40%), Gaps = 16/90 (17%)
Query: 5 GGNVTIFCNPEAAPKPKFVWKK----DGNIIG------------SGGRRKIFENGNLLIS 48
G NV C + P+P W K +G+ IG +G E L +
Sbjct: 131 GSNVEFMCKVYSDPQPHIQWLKHIEVNGSKIGPDNLPYVQILKTAGVNTTDKEMEVLHLR 190
Query: 49 PVSRDDSGIYSCTATNVHGMDESKGRLIVL 78
VS +D+G Y+C A N G+ L VL
Sbjct: 191 NVSFEDAGEYTCLAGNSIGLSHHSAWLTVL 220
>pdb|2OM5|A Chain A, N-Terminal Fragment Of Human Tax1
Length = 381
Score = 58.5 bits (140), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 47/168 (27%), Positives = 71/168 (42%), Gaps = 13/168 (7%)
Query: 1 YAGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSC 60
YA G VT+ C P P+ W+K + GS + L I VS +D G Y C
Sbjct: 217 YALVGQQVTLECFAFGNPVPRIKWRK---VDGSLSPQWTTAEPTLQIPSVSFEDEGTYEC 273
Query: 61 TATNVHGMDESKGRLIVLHGPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHN 120
A N G D +GR+IV P + + + NL+ C+A + V W N
Sbjct: 274 EAENSKGRDTVQGRIIVQAQPEWLKVI-SDTEADIGSNLRWGCAAAGKPRPTVR--WLRN 330
Query: 121 GVRIGNMDLNELETPNINIDGGLLEITNASFADAGEYECVVKSTVGKI 168
G + + + + + G L + S D+G Y+CV ++ G I
Sbjct: 331 GEPLASQN-------RVEVLAGDLRFSKLSLEDSGMYQCVAENKHGTI 371
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 36/73 (49%), Gaps = 1/73 (1%)
Query: 5 GGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTATN 64
G N+ C P+P W ++G + S R ++ G+L S +S +DSG+Y C A N
Sbjct: 308 GSNLRWGCAAAGKPRPTVRWLRNGEPLASQNRVEVLA-GDLRFSKLSLEDSGMYQCVAEN 366
Query: 65 VHGMDESKGRLIV 77
HG + L V
Sbjct: 367 KHGTIYASAELAV 379
Score = 42.4 bits (98), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 54/184 (29%), Positives = 75/184 (40%), Gaps = 38/184 (20%)
Query: 7 NVTIFCNPEAAPKPKFVWKKDGNIIG-SGGRRKIFENGNLLI-SPVSRDDSGIYSCTATN 64
V + C A+P + WK +G + G R GNL+I +P D+G+Y C A+N
Sbjct: 23 QVLLACRARASPPATYRWKMNGTEMKLEPGSRHQLVGGNLVIMNPTKAQDAGVYQCLASN 82
Query: 65 VHGM---DESKGRLIVLHGPSYYEQLPPKITIAAHR--NLQLRCS--AHTEELLDVAYIW 117
G E+ R L S E+ P + AH + L C+ AH L +Y W
Sbjct: 83 PVGTVVSREAILRFGFLQEFSKEERDP----VKAHEGWGVMLPCNPPAHYPGL---SYRW 135
Query: 118 THNGVRIGNMDLNELETPN-INIDG--------GLLEITNASFADAGEYECVVKSTVGKI 168
N E PN I DG G L I + +D G Y C+ S +
Sbjct: 136 LLN------------EFPNFIPTDGRHFVSQTTGNLYIARTNASDLGNYSCLATSHM-DF 182
Query: 169 STKT 172
STK+
Sbjct: 183 STKS 186
>pdb|2YD5|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human
Receptor Protein Tyrosine Phosphatase Lar
pdb|2YD8|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human
Receptor Protein Tyrosine Phosphatase Lar In Complex
With Sucrose Octasulphate
Length = 214
Score = 58.5 bits (140), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 54/180 (30%), Positives = 80/180 (44%), Gaps = 30/180 (16%)
Query: 5 GGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKI-FENGN---LLISP--VSRDDSGIY 58
GG + C PKP+ W K G + S I F++G L I P V RD++ IY
Sbjct: 21 GGVASFVCQATGEPKPRITWMKKGKKVSSQRFEVIEFDDGAGSVLRIQPLRVQRDEA-IY 79
Query: 59 SCTATNVHGMDESKGRLIVLHGPSYYEQLPPKI-TIAAHRNLQLRCSAHTEELL------ 111
CTATN G + +L VL EQLPP +I L++ A T +L
Sbjct: 80 ECTATNSLGEINTSAKLSVLE----EEQLPPGFPSIDMGPQLKVVEKARTATMLCAAGGN 135
Query: 112 -DVAYIWTHNGVRI----GNMDLNELETPNINIDGGLLEITNASFADAGEYECVVKSTVG 166
D W + + + N + +L + G L+I ++ +D G+YECV ++ G
Sbjct: 136 PDPEISWFKDFLPVDPATSNGRIKQLRS-------GALQIESSEESDQGKYECVATNSAG 188
>pdb|1EVT|C Chain C, Crystal Structure Of Fgf1 In Complex With The
Extracellular Ligand Binding Domain Of Fgf Receptor 1
(Fgfr1)
pdb|1EVT|D Chain D, Crystal Structure Of Fgf1 In Complex With The
Extracellular Ligand Binding Domain Of Fgf Receptor 1
(Fgfr1)
Length = 225
Score = 58.2 bits (139), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 46/176 (26%), Positives = 77/176 (43%), Gaps = 18/176 (10%)
Query: 8 VTIFCNPEAAPKPKFVWKKDGNIIGS----GGRRKIFENGNLLISPVSRDDSGIYSCTAT 63
V C P P W K+G GG + + ++++ V D G Y+C
Sbjct: 34 VKFKCPSSGTPNPTLRWLKNGKEFKPDHRIGGYKVRYATWSIIMDSVVPSDKGNYTCIVE 93
Query: 64 NVHGMDESKGRLIVL----HGPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTH 119
N +G +L V+ H P LP T+A N++ C +++ + ++ H
Sbjct: 94 NEYGSINHTYQLDVVERSPHRPILQAGLPANKTVALGSNVEFMCKVYSDPQPHIQWL-KH 152
Query: 120 ---NGVRIGNMDL---NELETPNINI---DGGLLEITNASFADAGEYECVVKSTVG 166
NG +IG +L L+T +N + +L + N SF DAGEY C+ +++G
Sbjct: 153 IEVNGSKIGPDNLPYVQILKTAGVNTTDKEMEVLHLRNVSFEDAGEYTCLAGNSIG 208
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 36/90 (40%), Gaps = 16/90 (17%)
Query: 5 GGNVTIFCNPEAAPKPKFVWKK----DGNIIG------------SGGRRKIFENGNLLIS 48
G NV C + P+P W K +G+ IG +G E L +
Sbjct: 130 GSNVEFMCKVYSDPQPHIQWLKHIEVNGSKIGPDNLPYVQILKTAGVNTTDKEMEVLHLR 189
Query: 49 PVSRDDSGIYSCTATNVHGMDESKGRLIVL 78
VS +D+G Y+C A N G+ L VL
Sbjct: 190 NVSFEDAGEYTCLAGNSIGLSHHSAWLTVL 219
>pdb|1CS6|A Chain A, N-terminal Fragment Of Axonin-1 From Chicken
Length = 382
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 44/168 (26%), Positives = 69/168 (41%), Gaps = 13/168 (7%)
Query: 1 YAGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSC 60
YA G VT+ C P P+ W+K + GS + + L I V +D G Y C
Sbjct: 218 YALTGQMVTLECFAFGNPVPQIKWRK---LDGSQTSKWLSSEPLLHIQNVDFEDEGTYEC 274
Query: 61 TATNVHGMDESKGRLIVLHGPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHN 120
A N+ G D +GR+I+ P + + + A LR S A W +
Sbjct: 275 EAENIKGRDTYQGRIIIHAQPDWLDVI---TDTEADIGSDLRWSCVASGKPRPAVRWLRD 331
Query: 121 GVRIGNMDLNELETPNINIDGGLLEITNASFADAGEYECVVKSTVGKI 168
G + + + I + GG L + D+G Y+CV ++ G +
Sbjct: 332 GQPLASQN-------RIEVSGGELRFSKLVLEDSGMYQCVAENKHGTV 372
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 55/179 (30%), Positives = 69/179 (38%), Gaps = 33/179 (18%)
Query: 7 NVTIFCNPEAAPKPKFVWKKDGNIIGSG-GRRKIFENGNLLIS-PVSRDDSGIYSCTATN 64
VT+ C A P + WK +G + G R G+L+IS PV D+G Y C ATN
Sbjct: 24 KVTLTCRARANPPATYRWKMNGTELKMGPDSRYRLVAGDLVISNPVKAKDAGSYQCVATN 83
Query: 65 VHGM---DESKGRLIVLHGPSYYEQLPPKITIAAHRNLQLRCS--AHTEELLDVAYIWTH 119
G E+ R L S E+ P KIT + CS H L +Y W
Sbjct: 84 ARGTVVSREASLRFGFLQEFSAEERDPVKIT--EGWGVMFTCSPPPHYPAL---SYRWLL 138
Query: 120 NGVRIGNMDLNELETPN-INIDG--------GLLEITNASFADAGEYECVVKSTVGKIS 169
N E PN I DG G L I +D G Y C S + I+
Sbjct: 139 N------------EFPNFIPADGRRFVSQTTGNLYIAKTEASDLGNYSCFATSHIDFIT 185
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 34/73 (46%), Gaps = 1/73 (1%)
Query: 5 GGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTATN 64
G ++ C P+P W +DG + S R ++ G L S + +DSG+Y C A N
Sbjct: 309 GSDLRWSCVASGKPRPAVRWLRDGQPLASQNRIEV-SGGELRFSKLVLEDSGMYQCVAEN 367
Query: 65 VHGMDESKGRLIV 77
HG + L V
Sbjct: 368 KHGTVYASAELTV 380
>pdb|2JLL|A Chain A, Crystal Structure Of Ncam2 Igiv-Fn3ii
Length = 389
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 88/383 (22%), Positives = 143/383 (37%), Gaps = 36/383 (9%)
Query: 4 EGGNVTIFCNPEAAPKPKFVWKK--DGNIIGSG-----GRRKI---FENGNLLISPVSRD 53
E G VT+ C+ E P P+ WK+ DG G GR ++ + +L I V
Sbjct: 14 ENGQVTLVCDAEGEPIPEITWKRAVDGFTFTEGDKSLDGRIEVKGQHGSSSLHIKDVKLS 73
Query: 54 DSGIYSCTATNVHGMDESKGRLIVLHGPSYYEQLPPKITIAAHRN-LQLRCSAHTEELLD 112
DSG Y C A + G + L + + P + I + N + + C +
Sbjct: 74 DSGRYDCEAASRIGGHQKSMYLDIEYAPKFISN--QTIYYSWEGNPINISCDVKSNPPAS 131
Query: 113 VAYIWTHNGVRIGNMDLNELETPNINIDGGLLEITNASFADAGEYECVVKSTVGKISTKT 172
+ W + + + + L+T + +LEI S D G Y C + +G +
Sbjct: 132 IH--WRRDKLVLPAKNTTNLKTYSTG-RKMILEIAPTSDNDFGRYNCTATNHIGTRFQEY 188
Query: 173 TXXXXXXXXXXXXXXXXXXHKTSATIQWTD-GATNGRPITHYKIIARTNWNSTWFNVSEH 231
+T+A + + + G PI HY++ + + W V H
Sbjct: 189 ILALADVPSSPYGVKIIELSQTTAKVSFNKPDSHGGVPIHHYQVDVKEVASEIWKIVRSH 248
Query: 232 VIGKEVDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPSPQYNTPADKPYQAP 291
G + + N L P +TYE +V A N G G+ S P +P
Sbjct: 249 ----------GVQTMVVLNNLEPNTTYEIRVAAVNGKGQGDYSKIEIFQTLPVREPSPPS 298
Query: 292 SRXXXXXXXXXDLSISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETLKEYGNVGIAVV 351
LSI+ ++ AP + Y + +R K D E Q K GN ++
Sbjct: 299 IHGQPSSGKSFKLSIT----KQDDGGAPILEYIVKYRSK-DKEDQWLEKKVQGNKDHIIL 353
Query: 352 RIPSEFYYTE-YEVKVQAINDVG 373
+T YEV++ A N +G
Sbjct: 354 E---HLQWTMGYEVQITAANRLG 373
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 37/74 (50%), Gaps = 15/74 (20%)
Query: 1 YAGEGGNVTIFCNPEAAPKPKFVWKKDGNIIG----------SGGRRKIFENGNLLISPV 50
Y+ EG + I C+ ++ P W++D ++ S GR+ I E I+P
Sbjct: 111 YSWEGNPINISCDVKSNPPASIHWRRDKLVLPAKNTTNLKTYSTGRKMILE-----IAPT 165
Query: 51 SRDDSGIYSCTATN 64
S +D G Y+CTATN
Sbjct: 166 SDNDFGRYNCTATN 179
>pdb|2EE2|A Chain A, Solution Structures Of The Fn3 Domain Of Human Contactin 1
Length = 119
Score = 56.6 bits (135), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 41/120 (34%), Positives = 62/120 (51%), Gaps = 7/120 (5%)
Query: 373 GPGPESEVVTIFSAEDMPQVAPQGVFSRGFNSTAINVTWNPIELIRENIRGRLIGHRIKY 432
G S V I SA+D P AP V + +S+ I+V W E + E I + ++I+Y
Sbjct: 1 GSSGSSGVAVINSAQDAPSEAPTEVGVKVLSSSEISVHW---EHVLEKI---VESYQIRY 54
Query: 433 WKEDNPEETAVYYLSRTTRNWALIVGLQPDTKYYVKVMAYNNAGEGPESERYLERTYRKA 492
W + EE A + A + L PDT+Y+++V A N+AG GP S+ +E +KA
Sbjct: 55 WAAHDKEEAANRVQVTSQEYSARLENLLPDTQYFIEVGACNSAGCGPPSD-MIEAFTKKA 113
Score = 35.4 bits (80), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 22/93 (23%), Positives = 44/93 (47%), Gaps = 5/93 (5%)
Query: 488 TYRKAPQKPPSAVHIKGINPTTVHVTWRYVSPSFEEEPIIGYKVRVWEVDQDMSRANDTI 547
+ + AP + P+ V +K ++ + + V W +V E+ + Y++R W D A + +
Sbjct: 13 SAQDAPSEAPTEVGVKVLSSSEISVHWEHVL----EKIVESYQIRYWAA-HDKEEAANRV 67
Query: 548 IPVGNTLDADIVDLSPGKRYHMRVLAFSNGGDG 580
A + +L P +Y + V A ++ G G
Sbjct: 68 QVTSQEYSARLENLLPDTQYFIEVGACNSAGCG 100
Score = 35.4 bits (80), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 25/105 (23%), Positives = 45/105 (42%), Gaps = 6/105 (5%)
Query: 281 NTPADKPYQAPSRXXXXXXXXXDLSISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETL 340
N+ D P +AP+ ++S+ WE + + + I Y K+ T
Sbjct: 12 NSAQDAPSEAPTEVGVKVLSSSEISVHWEHVLEKIVESYQIRYWAAHDKEEAANRVQVTS 71
Query: 341 KEYGNVGIAVVRIPSEFYYTEYEVKVQAINDVGPGPESEVVTIFS 385
+EY R+ + T+Y ++V A N G GP S+++ F+
Sbjct: 72 QEYS------ARLENLLPDTQYFIEVGACNSAGCGPPSDMIEAFT 110
>pdb|3PXJ|A Chain A, Tandem Ig Repeats Of Dlar
pdb|3PXJ|B Chain B, Tandem Ig Repeats Of Dlar
pdb|3PXJ|C Chain C, Tandem Ig Repeats Of Dlar
pdb|3PXJ|D Chain D, Tandem Ig Repeats Of Dlar
Length = 210
Score = 55.5 bits (132), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 47/183 (25%), Positives = 76/183 (41%), Gaps = 23/183 (12%)
Query: 5 GGNVTIFCNPEAAPKPKFVWKKDGN-IIGSGGRRKIFENGN----LLISPV--SRDDSGI 57
GG + +C P P VW+K+G + G+ R + E L I PV RDD+
Sbjct: 23 GGVASFYCAARGDPPPSIVWRKNGKKVSGTQSRYTVLEQPGGISILRIEPVRAGRDDA-P 81
Query: 58 YSCTATNVHGMDESKGRLIVLH-------GPSYYEQLPPKITIAAHRNLQLRCSAHTEEL 110
Y C A N G S + ++ G Q P I + + C A
Sbjct: 82 YECVAENGVGDAVSADATLTIYEGDKTPAGFPVITQGPGTRVIEVGHTVLMTCKAIGNPT 141
Query: 111 LDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEITNASFADAGEYECVVKSTVGKIST 170
++ W N ++ ++ P ++ G L+I N+ D G+YECV ++++G +
Sbjct: 142 PNI--YWIKNQTKV------DMSNPRYSLKDGFLQIENSREEDQGKYECVAENSMGTEHS 193
Query: 171 KTT 173
K T
Sbjct: 194 KAT 196
>pdb|2YD1|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of
Drosophila Receptor Protein Tyrosine Phosphatase Dlar
Length = 212
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 47/183 (25%), Positives = 76/183 (41%), Gaps = 23/183 (12%)
Query: 5 GGNVTIFCNPEAAPKPKFVWKKDGN-IIGSGGRRKIFENGN----LLISPV--SRDDSGI 57
GG + +C P P VW+K+G + G+ R + E L I PV RDD+
Sbjct: 21 GGVASFYCAARGDPPPSIVWRKNGKKVSGTQSRYTVLEQPGGISILRIEPVRAGRDDA-P 79
Query: 58 YSCTATNVHGMDESKGRLIVLH-------GPSYYEQLPPKITIAAHRNLQLRCSAHTEEL 110
Y C A N G S + ++ G Q P I + + C A
Sbjct: 80 YECVAENGVGDAVSADATLTIYEGDKTPAGFPVITQGPGTRVIEVGHTVLMTCKAIGNPT 139
Query: 111 LDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEITNASFADAGEYECVVKSTVGKIST 170
++ W N ++ ++ P ++ G L+I N+ D G+YECV ++++G +
Sbjct: 140 PNI--YWIKNQTKV------DMSNPRYSLKDGFLQIENSREEDQGKYECVAENSMGTEHS 191
Query: 171 KTT 173
K T
Sbjct: 192 KAT 194
>pdb|3B43|A Chain A, I-band Fragment I65-i70 From Titin
Length = 570
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 43/163 (26%), Positives = 70/163 (42%), Gaps = 16/163 (9%)
Query: 3 GEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRK--IFEN-GNLLISPVSRDDSGIYS 59
GE G T C+ K W KD I GG K + EN L + V++ D+G Y+
Sbjct: 212 GESG--TFKCHVTGTAPIKITWAKDNREIRPGGNYKMTLVENTATLTVLKVTKGDAGQYT 269
Query: 60 CTATNVHGMDESKGRLIVLHGPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTH 119
C A+NV G D +L V P + ++L P + + + C ++ +W
Sbjct: 270 CYASNVAGKDSCSAQLGVQEPPRFIKKLEPSRIVKQDEHTRYECKIGGSP--EIKVLWYK 327
Query: 120 NGVRI---GNMDLNELETPNINIDGGLLEITNASFADAGEYEC 159
+ I ++ +E+ +LE+ N S D+G+Y C
Sbjct: 328 DETEIQESSKFRMSFVESV------AVLEMYNLSVEDSGDYTC 364
Score = 50.1 bits (118), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 45/166 (27%), Positives = 72/166 (43%), Gaps = 8/166 (4%)
Query: 4 EGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGNLL---ISPVSRDDSGIYSC 60
+G +V + C + P + W KD + SG + KI L I V D G Y C
Sbjct: 398 KGADVHLECELQGTPPFQVSWHKDKRELRSGKKYKIMSENFLTSIHILNVDSADIGEYQC 457
Query: 61 TATNVHGMDESKGRLIVLHGPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHN 120
A+N G D G + + P + ++L I+ +QL+ + E + VA W +
Sbjct: 458 KASNDVGSDTCVGSITLKAPPRFVKKL-SDISTVVGEEVQLQATIEGAEPISVA--WFKD 514
Query: 121 GVRIGNMDLNELETPNINIDGGLLEITNASFADAGEYECVVKSTVG 166
I N + + NI L+ + A A+AG+Y C +K+ G
Sbjct: 515 KGEIVRESDNIWISYSENI--ATLQFSRAEPANAGKYTCQIKNEAG 558
Score = 38.1 bits (87), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 44/162 (27%), Positives = 66/162 (40%), Gaps = 17/162 (10%)
Query: 12 CNPEAAPKPKFVWKKDGNII--GSGGRRKIFENGNLL-ISPVSRDDSGIYSCTATNVHGM 68
C +P+ K +W KD I S R E+ +L + +S +DSG Y+C A N G
Sbjct: 313 CKIGGSPEIKVLWYKDETEIQESSKFRMSFVESVAVLEMYNLSVEDSGDYTCEAHNAAGS 372
Query: 69 DESKGRLIVLHGPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGN-- 126
S L V P + ++ P T+ ++ L C V++ +R G
Sbjct: 373 ASSSTSLKVKEPPVFRKKPHPVETLKG-ADVHLECELQGTPPFQVSWHKDKRELRSGKKY 431
Query: 127 --MDLNELETPNINIDGGLLEITNASFADAGEYECVVKSTVG 166
M N L + + I N AD GEY+C + VG
Sbjct: 432 KIMSENFLTS---------IHILNVDSADIGEYQCKASNDVG 464
>pdb|2RIK|A Chain A, I-Band Fragment I67-I69 From Titin
Length = 284
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 43/163 (26%), Positives = 70/163 (42%), Gaps = 16/163 (9%)
Query: 3 GEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRK--IFEN-GNLLISPVSRDDSGIYS 59
GE G T C+ K W KD I GG K + EN L + V++ D+G Y+
Sbjct: 20 GESG--TFKCHVTGTAPIKITWAKDNREIRPGGNYKMTLVENTATLTVLKVTKGDAGQYT 77
Query: 60 CTATNVHGMDESKGRLIVLHGPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTH 119
C A+NV G D +L V P + ++L P + + + C ++ +W
Sbjct: 78 CYASNVAGKDSCSAQLGVQEPPRFIKKLEPSRIVKQDEHTRYECKIGGSP--EIKVLWYK 135
Query: 120 NGVRI---GNMDLNELETPNINIDGGLLEITNASFADAGEYEC 159
+ I ++ +E+ + LE+ N S D+G+Y C
Sbjct: 136 DETEIQESSKFRMSFVESVAV------LEMYNLSVEDSGDYTC 172
Score = 38.1 bits (87), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 44/162 (27%), Positives = 66/162 (40%), Gaps = 17/162 (10%)
Query: 12 CNPEAAPKPKFVWKKDGNII--GSGGRRKIFENGNLL-ISPVSRDDSGIYSCTATNVHGM 68
C +P+ K +W KD I S R E+ +L + +S +DSG Y+C A N G
Sbjct: 121 CKIGGSPEIKVLWYKDETEIQESSKFRMSFVESVAVLEMYNLSVEDSGDYTCEAHNAAGS 180
Query: 69 DESKGRLIVLHGPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGN-- 126
S L V P + ++ P T+ ++ L C V++ +R G
Sbjct: 181 ASSSTSLKVKEPPVFRKKPHPVETLKG-ADVHLECELQGTPPFQVSWHKDKRELRSGKKY 239
Query: 127 --MDLNELETPNINIDGGLLEITNASFADAGEYECVVKSTVG 166
M N L + + I N AD GEY+C + VG
Sbjct: 240 KIMSENFLTS---------IHILNVDSADIGEYQCKASNDVG 272
>pdb|2YD6|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human
Receptor Protein Tyrosine Phosphatase Delta
pdb|2YD7|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human
Receptor Protein Tyrosine Phosphatase Delta
pdb|2YD7|B Chain B, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human
Receptor Protein Tyrosine Phosphatase Delta
Length = 212
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 47/176 (26%), Positives = 77/176 (43%), Gaps = 19/176 (10%)
Query: 5 GGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKI--FENGN---LLISPV-SRDDSGIY 58
GG + C P+PK VW K G + S R ++ F++G+ L I P+ + D IY
Sbjct: 21 GGVASFICQATGDPRPKIVWNKKGKKV-SNQRFEVIEFDDGSGSVLRIQPLRTPRDEAIY 79
Query: 59 SCTATNVHGMDESKGRLIVLHGPSYYEQLP-----PKITIAAH-RNLQLRCSAHTEELLD 112
C A+N G RL VL P P++ + R + C+A +
Sbjct: 80 ECVASNNVGEISVSTRLTVLREDQIPRGFPTIDMGPQLKVVERTRTATMLCAASGNPDPE 139
Query: 113 VAYIWTHNGVRIGNMD--LNELETPNINIDGGLLEITNASFADAGEYECVVKSTVG 166
+ + V N + + +L + +I G L+I + +D G+YECV ++ G
Sbjct: 140 ITWFKDFLPVDTSNNNGRIKQLRSESI----GALQIEQSEESDQGKYECVATNSAG 191
>pdb|2RJM|A Chain A, 3ig Structure Of Titin Domains I67-I69 E-To-A Mutated
Variant
Length = 284
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 43/163 (26%), Positives = 70/163 (42%), Gaps = 16/163 (9%)
Query: 3 GEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRK--IFEN-GNLLISPVSRDDSGIYS 59
GE G T C+ K W KD I GG K + EN L + V++ D+G Y+
Sbjct: 20 GESG--TFKCHVTGTAPIKITWAKDNREIRPGGNYKMTLVENTATLTVLKVTKGDAGQYT 77
Query: 60 CTATNVHGMDESKGRLIVLHGPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTH 119
C A+NV G D +L V P + ++L P + + + C ++ +W
Sbjct: 78 CYASNVAGKDSCSAQLGVQAPPRFIKKLEPSRIVKQDEHTRYECKIGGSP--EIKVLWYK 135
Query: 120 NGVRI---GNMDLNELETPNINIDGGLLEITNASFADAGEYEC 159
+ I ++ +E+ + LE+ N S D+G+Y C
Sbjct: 136 DETEIQESSKFRMSFVESVAV------LEMYNLSVEDSGDYTC 172
Score = 38.1 bits (87), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 44/162 (27%), Positives = 66/162 (40%), Gaps = 17/162 (10%)
Query: 12 CNPEAAPKPKFVWKKDGNII--GSGGRRKIFENGNLL-ISPVSRDDSGIYSCTATNVHGM 68
C +P+ K +W KD I S R E+ +L + +S +DSG Y+C A N G
Sbjct: 121 CKIGGSPEIKVLWYKDETEIQESSKFRMSFVESVAVLEMYNLSVEDSGDYTCEAHNAAGS 180
Query: 69 DESKGRLIVLHGPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGN-- 126
S L V P + ++ P T+ ++ L C V++ +R G
Sbjct: 181 ASSSTSLKVKEPPVFRKKPHPVETLKG-ADVHLECELQGTPPFQVSWHKDKRELRSGKKY 239
Query: 127 --MDLNELETPNINIDGGLLEITNASFADAGEYECVVKSTVG 166
M N L + + I N AD GEY+C + VG
Sbjct: 240 KIMSENFLTS---------IHILNVDSADIGEYQCKASNDVG 272
>pdb|3PXH|A Chain A, Tandem Ig Domains Of Tyrosine Phosphatase Lar
Length = 201
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 51/180 (28%), Positives = 78/180 (43%), Gaps = 30/180 (16%)
Query: 5 GGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKI-FENGN---LLISP--VSRDDSGIY 58
GG + C PKP+ W K G + S I F++G L I P V RD++ IY
Sbjct: 22 GGVASFVCQATGEPKPRITWMKKGKKVSSQRFEVIEFDDGAGSVLRIQPLRVQRDEA-IY 80
Query: 59 SCTATNVHGMDESKGRLIVLHGPSYYEQLP---PKITIAAH-------RNLQLRCSAHTE 108
CTATN G + +L VL +QLP P I + R + C+A
Sbjct: 81 ECTATNSLGEINTSAKLSVLE----EDQLPSGFPTIDMGPQLKVVEKGRTATMLCAAGGN 136
Query: 109 ELLDVAYIWTHNGV--RIGNMDLNELETPNINIDGGLLEITNASFADAGEYECVVKSTVG 166
++++ V N + +L + G L+I ++ +D G+YECV ++ G
Sbjct: 137 PDPEISWFKDFLPVDPAASNGRIKQLRS-------GALQIESSEESDQGKYECVATNSAG 189
Score = 39.3 bits (90), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 28/67 (41%), Gaps = 3/67 (4%)
Query: 4 EGGNVTIFCNPEAAPKPKFVWKKDG---NIIGSGGRRKIFENGNLLISPVSRDDSGIYSC 60
+G T+ C P P+ W KD + S GR K +G L I D G Y C
Sbjct: 123 KGRTATMLCAAGGNPDPEISWFKDFLPVDPAASNGRIKQLRSGALQIESSEESDQGKYEC 182
Query: 61 TATNVHG 67
ATN G
Sbjct: 183 VATNSAG 189
>pdb|3LAF|A Chain A, Structure Of Dcc, A Netrin-1 Receptor
Length = 403
Score = 53.1 bits (126), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 42/166 (25%), Positives = 70/166 (42%), Gaps = 10/166 (6%)
Query: 2 AGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRR-KIFENGNLLISPVSRDDSGIYSC 60
A EG + + C P P F W + +I ++ + NLLIS V+ DDSG Y+C
Sbjct: 233 AIEGKDAVLECCVSGYPPPSFTWLRGEEVIQLRSKKYSLLGGSNLLISNVTDDDSGTYTC 292
Query: 61 TATNVHGMDESKGRLIVLHGPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHN 120
T + + L VL P ++ P + +++ C+ + + V W N
Sbjct: 293 VVTYKNENISASAELTVLV-PPWFLNHPSNLYAYESMDIEFECAVSGKPVPTVN--WMKN 349
Query: 121 GVRIGNMDLNELETPNINIDGGLLEITNASFADAGEYECVVKSTVG 166
G + D ++ + G L I +D G Y+CV ++ G
Sbjct: 350 GDVVIPSDYFQI------VGGSNLRILGVVKSDEGFYQCVAENEAG 389
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 45/170 (26%), Positives = 76/170 (44%), Gaps = 18/170 (10%)
Query: 5 GGNVTIFCNPEAAPK-PKFVWKKDGNIIGSG--GRRKIFENGNLLISPV-----SRDDSG 56
GGNV + C+ E+ P WKKDG I+ G R++ NG+LLI + + D G
Sbjct: 36 GGNVLLNCSAESDRGVPVIKWKKDGLILALGMDDRKQQLPNGSLLIQNILHSRHHKPDEG 95
Query: 57 IYSCTAT-NVHGMDESKGRLIVLHGPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAY 115
+Y C A+ G S+ +++ GP + IT + L+C + + +
Sbjct: 96 LYQCEASLGDSGSIISRTAKVMVAGPLRFLSQTESITAFMGDTVLLKCEVIGDPMPTIH- 154
Query: 116 IWTHNGVRIGNMDLNEL--ETPNINIDGGLLEITNASFADAGEYECVVKS 163
W N DLN + ++ + + G L+I+ D+G Y C ++
Sbjct: 155 -WQKN-----QQDLNPIPGDSRVVVLPSGALQISRLQPGDSGVYRCSARN 198
Score = 47.4 bits (111), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 44/167 (26%), Positives = 72/167 (43%), Gaps = 18/167 (10%)
Query: 5 GGNVTIFCNPEAAPKPKFVWKK---DGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCT 61
G V + C P P W+K D N I R + +G L IS + DSG+Y C+
Sbjct: 136 GDTVLLKCEVIGDPMPTIHWQKNQQDLNPIPGDSRVVVLPSGALQISRLQPGDSGVYRCS 195
Query: 62 ATN---VHGMDESKGRLIV---LHGPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAY 115
A N +E++ R++ LH Y+ Q P + ++ L C ++
Sbjct: 196 ARNPASTRTGNEAEVRILSDPGLHRQLYFLQRPSNVIAIEGKDAVLECCVSGYP--PPSF 253
Query: 116 IWTHNGVRIGNMDLNELETPNINIDGGL-LEITNASFADAGEYECVV 161
W + ++ +L + ++ GG L I+N + D+G Y CVV
Sbjct: 254 TW------LRGEEVIQLRSKKYSLLGGSNLLISNVTDDDSGTYTCVV 294
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 35/77 (45%)
Query: 1 YAGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSC 60
YA E ++ C P P W K+G+++ +I NL I V + D G Y C
Sbjct: 323 YAYESMDIEFECAVSGKPVPTVNWMKNGDVVIPSDYFQIVGGSNLRILGVVKSDEGFYQC 382
Query: 61 TATNVHGMDESKGRLIV 77
A N G +S +LIV
Sbjct: 383 VAENEAGNAQSSAQLIV 399
>pdb|2EDX|A Chain A, Solution Structures Of The Fn3 Domain Of Human Receptor-
Type Tyrosine-Protein Phosphatase F
Length = 134
Score = 53.1 bits (126), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 40/125 (32%), Positives = 55/125 (44%), Gaps = 5/125 (4%)
Query: 378 SEVVTIFSAEDMPQVAPQGVFSRGFNSTAINVTWNPIELIRENIRGRLIGHRIKYWKEDN 437
S + +A+ P PQ V ST + V+W P N G + + + Y D
Sbjct: 6 SGTIEARTAQSTPSAPPQKVMCVSMGSTTVRVSWVPPPADSRN--GVITQYSVAYEAVDG 63
Query: 438 PEET--AVYYLSRTTRNWALIVGLQPDTKYYVKVMAYNNAGEGPESERYLERTYRKAPQK 495
+ V +SR +W L VGL+ T+Y V V A+ + G GPES L RT P
Sbjct: 64 EDRGRHVVDGISREHSSWDL-VGLEKWTEYRVWVRAHTDVGPGPESSPVLVRTDEDVPSG 122
Query: 496 PPSAV 500
PP V
Sbjct: 123 PPRKV 127
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 34/128 (26%), Positives = 53/128 (41%), Gaps = 15/128 (11%)
Query: 279 QYNTPADKPYQAPSRXXXXXXXXXDLSISWEPLPREKQNAPNIYYKIFW-------RKKN 331
+ T P P + + +SW P P + +N Y + + R ++
Sbjct: 10 EARTAQSTPSAPPQKVMCVSMGSTTVRVSWVPPPADSRNGVITQYSVAYEAVDGEDRGRH 69
Query: 332 DTEFQSETLKEYGNVGIAVVRIPSEFYYTEYEVKVQAINDVGPGPESEVVTIFSAEDMPQ 391
+ S + VG+ +TEY V V+A DVGPGPES V + + ED+P
Sbjct: 70 VVDGISREHSSWDLVGLE--------KWTEYRVWVRAHTDVGPGPESSPVLVRTDEDVPS 121
Query: 392 VAPQGVFS 399
P+ V S
Sbjct: 122 GPPRKVES 129
Score = 28.9 bits (63), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 31/117 (26%), Positives = 46/117 (39%), Gaps = 5/117 (4%)
Query: 487 RTYRKAPQKPPSAVHIKGINPTTVHVTWRYVSPSFEEEPIIGYKVRVWEVDQDMSRANDT 546
RT + P PP V + TTV V+W I Y V VD + R
Sbjct: 12 RTAQSTPSAPPQKVMCVSMGSTTVRVSWVPPPADSRNGVITQYSVAYEAVDGE-DRGRHV 70
Query: 547 IIPVGNTLDA-DIVDLSPGKRYHMRVLAFSNGGDGRMSSPAITFQMGEEKEFKSGSP 602
+ + + D+V L Y + V A ++ G G SSP + +++ SG P
Sbjct: 71 VDGISREHSSWDLVGLEKWTEYRVWVRAHTDVGPGPESSPVLVRT---DEDVPSGPP 124
>pdb|2XYC|A Chain A, Crystal Structure Of Ncam2 Igiv-Fn3i
Length = 291
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 68/289 (23%), Positives = 105/289 (36%), Gaps = 39/289 (13%)
Query: 4 EGGNVTIFCNPEAAPKPKFVWKK--DGNIIGSG-----GRRKI---FENGNLLISPVSRD 53
E G VT+ C+ E P P+ WK+ DG G GR ++ + +L I V
Sbjct: 14 ENGQVTLVCDAEGEPIPEITWKRAVDGFTFTEGDKSLDGRIEVKGQHGSSSLHIKDVKLS 73
Query: 54 DSGIYSCTATNVHGMDESKGRLIVLHGPS-------YYEQLPPKITIAAHRNLQLRCSAH 106
DSG Y C A + G + L + + P YY I I+ S H
Sbjct: 74 DSGRYDCEAASRIGGHQKSMYLDIEYAPKFISNQTIYYSWEGNPINISCDVKSNPPASIH 133
Query: 107 TEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEITNASFADAGEYECVVKSTVG 166
W + + + + L+T + +LEI S D G Y C + +G
Sbjct: 134 ----------WRRDKLVLPAKNTTNLKTYSTG-RKMILEIAPTSDNDFGRYNCTATNHIG 182
Query: 167 KISTKTTXXXXXXXXXXXXXXXXXXHKTSATIQWTD-GATNGRPITHYKIIARTNWNSTW 225
+ +T+A + + + G PI HY++ + + W
Sbjct: 183 TRFQEYILALADVPSSPYGVKIIELSQTTAKVSFNKPDSHGGVPIHHYQVDVKEVASEIW 242
Query: 226 FNVSEHVIGKEVDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPS 274
V H G + + N L P +TYE +V A N G G+ S
Sbjct: 243 KIVRSH----------GVQTMVVLNNLEPNTTYEIRVAAVNGKGQGDYS 281
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 37/74 (50%), Gaps = 15/74 (20%)
Query: 1 YAGEGGNVTIFCNPEAAPKPKFVWKKDGNIIG----------SGGRRKIFENGNLLISPV 50
Y+ EG + I C+ ++ P W++D ++ S GR+ I E I+P
Sbjct: 111 YSWEGNPINISCDVKSNPPASIHWRRDKLVLPAKNTTNLKTYSTGRKMILE-----IAPT 165
Query: 51 SRDDSGIYSCTATN 64
S +D G Y+CTATN
Sbjct: 166 SDNDFGRYNCTATN 179
>pdb|3F7R|A Chain A, First Pair Of Fibronectin Type Iii Domains And Part Of The
Connecting Segment Of The Integrin Beta4
Length = 249
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 40/147 (27%), Positives = 64/147 (43%), Gaps = 12/147 (8%)
Query: 393 APQGVFSRGFNSTAINVTWNPIELIRENIRGRLIGHRIKYWKEDNPEETAVYYLSRTTRN 452
APQ ++ S I+ W P G+ +G+R+KYW + + E A S+
Sbjct: 8 APQNPNAKAAGSRKIHFNWLPPS-------GKPMGYRVKYWIQGDSESEAHLLDSKVPS- 59
Query: 453 WALIVGLQPDTKYYVKVMAYNNAGEGPESERYLERTYRKAPQKPPSAVHIKGINPTTVHV 512
+ L P Y +KV AY GEGP S RT+++ P + P + ++ T +
Sbjct: 60 -VELTNLYPYCDYEMKVCAYGAQGEGPYSSLVSCRTHQEVPSE-PGRLAFNVVSSTVTQL 117
Query: 513 TWRYVSPSFEEEPIIGYKVRVWEVDQD 539
+W P+ I Y+V V+ D
Sbjct: 118 SW--AEPAETNGEITAYEVCYGLVNDD 142
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 42/165 (25%), Positives = 75/165 (45%), Gaps = 15/165 (9%)
Query: 323 YKIFWRKKNDTEFQSETLKEYGNVGIAVVRIPSEFYYTEYEVKVQAINDVGPGPESEVVT 382
Y++ + + D+E ++ L + + V + + + Y +YE+KV A G GP S +V+
Sbjct: 36 YRVKYWIQGDSESEAHLL----DSKVPSVELTNLYPYCDYEMKVCAYGAQGEGPYSSLVS 91
Query: 383 IFSAEDMPQVAPQGVFSRGFNSTAINVTW-NPIELIRENIRGRLIGHRIKYW--KEDN-P 438
+ +++P + F+ +ST ++W P E G + + + Y +DN P
Sbjct: 92 CRTHQEVPSEPGRLAFNV-VSSTVTQLSWAEPAE-----TNGEITAYEVCYGLVNDDNRP 145
Query: 439 EETAVYYLSRTTRNWALIV-GLQPDTKYYVKVMAYNNAGEGPESE 482
L +N L++ L+ Y V A N AG GPE E
Sbjct: 146 IGPMKKVLVDNPKNRMLLIENLRESQPYRYTVKARNGAGWGPERE 190
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 43/95 (45%), Gaps = 16/95 (16%)
Query: 492 APQKPPSAVHIKGINPTTVHVTWRYVSPSFEEEPIIGYKVRVWEVDQDMSRAN--DTIIP 549
APQ P + K +H W + PS + +GY+V+ W S A+ D+ +P
Sbjct: 8 APQNP----NAKAAGSRKIHFNW--LPPSGKP---MGYRVKYWIQGDSESEAHLLDSKVP 58
Query: 550 VGNTLDADIVDLSPGKRYHMRVLAFSNGGDGRMSS 584
++ +L P Y M+V A+ G+G SS
Sbjct: 59 -----SVELTNLYPYCDYEMKVCAYGAQGEGPYSS 88
>pdb|3F7P|C Chain C, Crystal Structure Of A Complex Between Integrin Beta4 And
Plectin
pdb|3F7P|D Chain D, Crystal Structure Of A Complex Between Integrin Beta4 And
Plectin
pdb|3F7P|E Chain E, Crystal Structure Of A Complex Between Integrin Beta4 And
Plectin
Length = 248
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 40/147 (27%), Positives = 64/147 (43%), Gaps = 12/147 (8%)
Query: 393 APQGVFSRGFNSTAINVTWNPIELIRENIRGRLIGHRIKYWKEDNPEETAVYYLSRTTRN 452
APQ ++ S I+ W P G+ +G+R+KYW + + E A S+
Sbjct: 7 APQNPNAKAAGSRKIHFNWLPPS-------GKPMGYRVKYWIQGDSESEAHLLDSKVPS- 58
Query: 453 WALIVGLQPDTKYYVKVMAYNNAGEGPESERYLERTYRKAPQKPPSAVHIKGINPTTVHV 512
+ L P Y +KV AY GEGP S RT+++ P + P + ++ T +
Sbjct: 59 -VELTNLYPYCDYEMKVCAYGAQGEGPYSSLVSCRTHQEVPSE-PGRLAFNVVSSTVTQL 116
Query: 513 TWRYVSPSFEEEPIIGYKVRVWEVDQD 539
+W P+ I Y+V V+ D
Sbjct: 117 SW--AEPAETNGEITAYEVCYGLVNDD 141
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 42/165 (25%), Positives = 75/165 (45%), Gaps = 15/165 (9%)
Query: 323 YKIFWRKKNDTEFQSETLKEYGNVGIAVVRIPSEFYYTEYEVKVQAINDVGPGPESEVVT 382
Y++ + + D+E ++ L + + V + + + Y +YE+KV A G GP S +V+
Sbjct: 35 YRVKYWIQGDSESEAHLL----DSKVPSVELTNLYPYCDYEMKVCAYGAQGEGPYSSLVS 90
Query: 383 IFSAEDMPQVAPQGVFSRGFNSTAINVTW-NPIELIRENIRGRLIGHRIKYW--KEDN-P 438
+ +++P + F+ +ST ++W P E G + + + Y +DN P
Sbjct: 91 CRTHQEVPSEPGRLAFNV-VSSTVTQLSWAEPAE-----TNGEITAYEVCYGLVNDDNRP 144
Query: 439 EETAVYYLSRTTRNWALIV-GLQPDTKYYVKVMAYNNAGEGPESE 482
L +N L++ L+ Y V A N AG GPE E
Sbjct: 145 IGPMKKVLVDNPKNRMLLIENLRESQPYRYTVKARNGAGWGPERE 189
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 43/95 (45%), Gaps = 16/95 (16%)
Query: 492 APQKPPSAVHIKGINPTTVHVTWRYVSPSFEEEPIIGYKVRVWEVDQDMSRAN--DTIIP 549
APQ P + K +H W + PS + +GY+V+ W S A+ D+ +P
Sbjct: 7 APQNP----NAKAAGSRKIHFNW--LPPSGKP---MGYRVKYWIQGDSESEAHLLDSKVP 57
Query: 550 VGNTLDADIVDLSPGKRYHMRVLAFSNGGDGRMSS 584
++ +L P Y M+V A+ G+G SS
Sbjct: 58 -----SVELTNLYPYCDYEMKVCAYGAQGEGPYSS 87
>pdb|3F7Q|A Chain A, First Pair Of Fibronectin Type Iii Domains And Part Of The
Connecting Segment Of The Integrin Beta4
pdb|3F7Q|B Chain B, First Pair Of Fibronectin Type Iii Domains And Part Of The
Connecting Segment Of The Integrin Beta4
Length = 234
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 40/147 (27%), Positives = 64/147 (43%), Gaps = 12/147 (8%)
Query: 393 APQGVFSRGFNSTAINVTWNPIELIRENIRGRLIGHRIKYWKEDNPEETAVYYLSRTTRN 452
APQ ++ S I+ W P G+ +G+R+KYW + + E A S+
Sbjct: 8 APQNPNAKAAGSRKIHFNWLPPS-------GKPMGYRVKYWIQGDSESEAHLLDSKVPS- 59
Query: 453 WALIVGLQPDTKYYVKVMAYNNAGEGPESERYLERTYRKAPQKPPSAVHIKGINPTTVHV 512
+ L P Y +KV AY GEGP S RT+++ P + P + ++ T +
Sbjct: 60 -VELTNLYPYCDYEMKVCAYGAQGEGPYSSLVSCRTHQEVPSE-PGRLAFNVVSSTVTQL 117
Query: 513 TWRYVSPSFEEEPIIGYKVRVWEVDQD 539
+W P+ I Y+V V+ D
Sbjct: 118 SW--AEPAETNGEITAYEVCYGLVNDD 142
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 42/165 (25%), Positives = 75/165 (45%), Gaps = 15/165 (9%)
Query: 323 YKIFWRKKNDTEFQSETLKEYGNVGIAVVRIPSEFYYTEYEVKVQAINDVGPGPESEVVT 382
Y++ + + D+E ++ L + + V + + + Y +YE+KV A G GP S +V+
Sbjct: 36 YRVKYWIQGDSESEAHLL----DSKVPSVELTNLYPYCDYEMKVCAYGAQGEGPYSSLVS 91
Query: 383 IFSAEDMPQVAPQGVFSRGFNSTAINVTW-NPIELIRENIRGRLIGHRIKYW--KEDN-P 438
+ +++P + F+ +ST ++W P E G + + + Y +DN P
Sbjct: 92 CRTHQEVPSEPGRLAFNV-VSSTVTQLSWAEPAE-----TNGEITAYEVCYGLVNDDNRP 145
Query: 439 EETAVYYLSRTTRNWALIV-GLQPDTKYYVKVMAYNNAGEGPESE 482
L +N L++ L+ Y V A N AG GPE E
Sbjct: 146 IGPMKKVLVDNPKNRMLLIENLRESQPYRYTVKARNGAGWGPERE 190
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 43/95 (45%), Gaps = 16/95 (16%)
Query: 492 APQKPPSAVHIKGINPTTVHVTWRYVSPSFEEEPIIGYKVRVWEVDQDMSRAN--DTIIP 549
APQ P + K +H W + PS + +GY+V+ W S A+ D+ +P
Sbjct: 8 APQNP----NAKAAGSRKIHFNW--LPPSGKP---MGYRVKYWIQGDSESEAHLLDSKVP 58
Query: 550 VGNTLDADIVDLSPGKRYHMRVLAFSNGGDGRMSS 584
++ +L P Y M+V A+ G+G SS
Sbjct: 59 -----SVELTNLYPYCDYEMKVCAYGAQGEGPYSS 88
>pdb|3DMK|A Chain A, Crystal Structure Of Down Syndrome Cell Adhesion Molecule
(Dscam) Isoform 1.30.30, N-Terminal Eight Ig Domains
pdb|3DMK|B Chain B, Crystal Structure Of Down Syndrome Cell Adhesion Molecule
(Dscam) Isoform 1.30.30, N-Terminal Eight Ig Domains
pdb|3DMK|C Chain C, Crystal Structure Of Down Syndrome Cell Adhesion Molecule
(Dscam) Isoform 1.30.30, N-Terminal Eight Ig Domains
Length = 816
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 47/170 (27%), Positives = 77/170 (45%), Gaps = 17/170 (10%)
Query: 5 GGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGNLLISPVSRD-DSGIYSCTAT 63
G + + C P VW++D + ++K+F NG L+I V R+ D Y+C A
Sbjct: 541 GETLIVTCPVAGYPIDSIVWERDNRALPINRKQKVFPNGTLIIENVERNSDQATYTCVAK 600
Query: 64 NVHGMDESKGRL----IVLHG--PSYYEQLPPKITIAAHRNLQLRCSAHTEEL-LDVAYI 116
N G ++G L +VL P +E+ P ++ + L L CS +L L++
Sbjct: 601 NQEGYS-ARGSLEVQVMVLPRIIPFAFEEGPAQV----GQYLTLHCSVPGGDLPLNID-- 653
Query: 117 WTHNGVRIGNMDLNELETPNINIDGGLLEITNASFADAGEYECVVKSTVG 166
WT +G I DL + T + G +L I + AG + C ++ G
Sbjct: 654 WTLDGQAISE-DLG-ITTSRVGRRGSVLTIEAVEASHAGNFTCHARNLAG 701
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 43/167 (25%), Positives = 68/167 (40%), Gaps = 16/167 (9%)
Query: 6 GNVTIF-CNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTATN 64
G +F C P W KDG IG L I V ++D G+Y C N
Sbjct: 358 GRPAVFTCQYTGNPIKTVSWMKDGKAIG-------HSESVLRIESVKKEDKGMYQCFVRN 410
Query: 65 VHGMDESKGRLIV--LHGPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGV 122
E+ L + P Q + T+ ++ L+C A +++ W +G
Sbjct: 411 DRESAEASAELKLGGRFDPPVIRQAFQEETMEPGPSVFLKCVAGGNPTPEIS--WELDGK 468
Query: 123 RIGNMDLNELETPNINIDGGL---LEITNASFADAGEYECVVKSTVG 166
+I N D ++ + ++G + L IT+ D G Y+C+ KS VG
Sbjct: 469 KIANNDRYQVGQ-YVTVNGDVVSYLNITSVHANDGGLYKCIAKSKVG 514
Score = 42.7 bits (99), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 45/171 (26%), Positives = 74/171 (43%), Gaps = 19/171 (11%)
Query: 5 GGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFE----NGNLL----ISPVSRDDSG 56
G +V + C P P+ W+ DG I + R ++ + NG+++ I+ V +D G
Sbjct: 444 GPSVFLKCVAGGNPTPEISWELDGKKIANNDRYQVGQYVTVNGDVVSYLNITSVHANDGG 503
Query: 57 IYSCTATNVHGMDESKGRLIVLHGPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYI 116
+Y C A + G+ E +L V +G Y Q+ K I A L + C + + +
Sbjct: 504 LYKCIAKSKVGVAEHSAKLNV-YGLPYIRQMEKK-AIVAGETLIVTCPVAGYPIDSI--V 559
Query: 117 WTHNGVRIGNMDLNELETPNINIDGGLLEITNASF-ADAGEYECVVKSTVG 166
W + R ++ + PN G L I N +D Y CV K+ G
Sbjct: 560 WERDN-RALPINRKQKVFPN-----GTLIIENVERNSDQATYTCVAKNQEG 604
Score = 32.3 bits (72), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 40/154 (25%), Positives = 64/154 (41%), Gaps = 22/154 (14%)
Query: 35 GRRKIFENGNLLISPVSRDDS-GIYSC-TATNVHG---MDESKGRLIVLHGPSYYEQLPP 89
G+ + +G L I V +D Y C T + G + +KGRL++ S P
Sbjct: 191 GKYLVLPSGELHIREVGPEDGYKSYQCRTKHRLTGETRLSATKGRLVITEPIS---SAVP 247
Query: 90 KITIAAHRNLQLRCSAHTEELLDVA----------YIWTHNGVRIGNMDLNELETPNINI 139
K+ A +++ + T LL A Y + R + LN+ +
Sbjct: 248 KVVSLAKFDMKTYSGSSTMALLCPAQGYPVPVFRWYKFIEGTTRKQAVVLND----RVKQ 303
Query: 140 DGGLLEITNASFADAGEYECVVKSTVGKISTKTT 173
G L I +A D+G+Y CVV ++VG S +T
Sbjct: 304 VSGTLIIKDAVVEDSGKYLCVVNNSVGGESVETV 337
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 30/68 (44%), Gaps = 6/68 (8%)
Query: 3 GEGGNVTIFCNPEAAPKPKFVWKKD-GNIIGSGGRRKIFEN-----GNLLISPVSRDDSG 56
+G + + C + PKP+ WKK G+ G K +N G L + + + + G
Sbjct: 727 AQGSDAKVECKADGFPKPQVTWKKAVGDTPGEYKDLKKSDNIRVEEGTLHVDNIQKTNEG 786
Query: 57 IYSCTATN 64
Y C A N
Sbjct: 787 YYLCEAIN 794
>pdb|1QG3|A Chain A, Crystal Structure Of A Tandem Pair Of Fibronectin Type Iii
Domains From The Cytoplasmic Tail Of Integrin Alpha6
Beta4
pdb|1QG3|B Chain B, Crystal Structure Of A Tandem Pair Of Fibronectin Type Iii
Domains From The Cytoplasmic Tail Of Integrin Alpha6
Beta4
Length = 195
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 40/147 (27%), Positives = 64/147 (43%), Gaps = 12/147 (8%)
Query: 393 APQGVFSRGFNSTAINVTWNPIELIRENIRGRLIGHRIKYWKEDNPEETAVYYLSRTTRN 452
APQ ++ S I+ W P G+ +G+R+KYW + + E A S+
Sbjct: 4 APQNPNAKAAGSRKIHFNWLPPS-------GKPMGYRVKYWIQGDSESEAHLLDSKVPS- 55
Query: 453 WALIVGLQPDTKYYVKVMAYNNAGEGPESERYLERTYRKAPQKPPSAVHIKGINPTTVHV 512
+ L P Y +KV AY GEGP S RT+++ P + P + ++ T +
Sbjct: 56 -VELTNLYPYCDYEMKVCAYGAQGEGPYSSLVSCRTHQEVPSE-PGRLAFNVVSSTVTQL 113
Query: 513 TWRYVSPSFEEEPIIGYKVRVWEVDQD 539
+W P+ I Y+V V+ D
Sbjct: 114 SW--AEPAETNGEITAYEVCYGLVNDD 138
Score = 39.3 bits (90), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 42/165 (25%), Positives = 75/165 (45%), Gaps = 15/165 (9%)
Query: 323 YKIFWRKKNDTEFQSETLKEYGNVGIAVVRIPSEFYYTEYEVKVQAINDVGPGPESEVVT 382
Y++ + + D+E ++ L + + V + + + Y +YE+KV A G GP S +V+
Sbjct: 32 YRVKYWIQGDSESEAHLL----DSKVPSVELTNLYPYCDYEMKVCAYGAQGEGPYSSLVS 87
Query: 383 IFSAEDMPQVAPQGVFSRGFNSTAINVTW-NPIELIRENIRGRLIGHRIKYW--KEDN-P 438
+ +++P + F+ +ST ++W P E G + + + Y +DN P
Sbjct: 88 CRTHQEVPSEPGRLAFNV-VSSTVTQLSWAEPAE-----TNGEITAYEVCYGLVNDDNRP 141
Query: 439 EETAVYYLSRTTRNWALIV-GLQPDTKYYVKVMAYNNAGEGPESE 482
L +N L++ L+ Y V A N AG GPE E
Sbjct: 142 IGPMKKVLVDNPKNRMLLIENLRESQPYRYTVKARNGAGWGPERE 186
Score = 32.3 bits (72), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 43/95 (45%), Gaps = 16/95 (16%)
Query: 492 APQKPPSAVHIKGINPTTVHVTWRYVSPSFEEEPIIGYKVRVWEVDQDMSRAN--DTIIP 549
APQ P + K +H W + PS + +GY+V+ W S A+ D+ +P
Sbjct: 4 APQNP----NAKAAGSRKIHFNW--LPPSGKP---MGYRVKYWIQGDSESEAHLLDSKVP 54
Query: 550 VGNTLDADIVDLSPGKRYHMRVLAFSNGGDGRMSS 584
++ +L P Y M+V A+ G+G SS
Sbjct: 55 -----SVELTNLYPYCDYEMKVCAYGAQGEGPYSS 84
>pdb|2V9Q|A Chain A, First And Second Ig Domains From Human Robo1
pdb|2V9R|A Chain A, First And Second Ig Domains From Human Robo1 (Form 2)
Length = 212
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 48/178 (26%), Positives = 69/178 (38%), Gaps = 24/178 (13%)
Query: 4 EGGNVTIFCNPEAAPKPKFVWKKDGNIIGSG-----GRRKIFENGNLLISPV-----SRD 53
+G T+ C E P P W K G + + R + +G+L + SR
Sbjct: 23 KGEPATLNCKAEGRPTPTIEWYKGGERVETDKDDPRSHRMLLPSGSLFFLRIVHGRKSRP 82
Query: 54 DSGIYSCTATNVHGMDES-KGRLIVLHGPSYYEQLPPKITIAAHRNLQLRCS---AHTEE 109
D G+Y C A N G S L V + Q P + +A + C H E
Sbjct: 83 DEGVYVCVARNYLGEAVSHDASLEVAILRDDFRQNPSDVMVAVGEPAVMECQPPRGHPEP 142
Query: 110 LLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEITNASFADAGEYECVVKSTVGK 167
+ W +G + + D I I GG L IT +DAG+Y CV + VG+
Sbjct: 143 TIS----WKKDGSPLDDKD------ERITIRGGKLMITYTRKSDAGKYVCVGTNMVGE 190
Score = 50.1 bits (118), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 40/84 (47%), Gaps = 8/84 (9%)
Query: 14 PEAAPKPKFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTATNVHGMDESK- 72
P P+P WKKDG+ + R G L+I+ + D+G Y C TN+ G ES+
Sbjct: 136 PRGHPEPTISWKKDGSPLDDKDERITIRGGKLMITYTRKSDAGKYVCVGTNMVGERESEV 195
Query: 73 GRLIVLHGPSYYEQLPPKITIAAH 96
L VL PS+ + AAH
Sbjct: 196 AELTVLERPSF-------VKAAAH 212
>pdb|2YD4|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of
Chicken Receptor Protein Tyrosine Phosphatase Sigma
Length = 210
Score = 50.1 bits (118), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 47/181 (25%), Positives = 70/181 (38%), Gaps = 32/181 (17%)
Query: 5 GGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKI-FENGN---LLISPV-SRDDSGIYS 59
GG + C PKP+ W K G + S I F+ L I P+ + D IY
Sbjct: 21 GGVASFVCQATGDPKPRVTWNKKGKKVNSQRFETIEFDESAGAVLRIQPLRTPRDENIYE 80
Query: 60 CTATNVHGMDESKGRLIVLHGPSYYEQLPPKI----------TIAAHRNLQLRCSAHTEE 109
C A N HG +L VL +QLPP + R + C+A
Sbjct: 81 CVAQNPHGEVTVHAKLTVLR----EDQLPPGFPNIDMGPQLKVVERTRTATMLCAASGNP 136
Query: 110 LLDVAYIWTHNGVRI----GNMDLNELETPNINIDGGLLEITNASFADAGEYECVVKSTV 165
D W + + + N + +L + G L+I ++ D G+YECV ++
Sbjct: 137 --DPEITWFKDFLPVDPSTSNGRIKQLRS-------GGLQIESSEETDQGKYECVASNSA 187
Query: 166 G 166
G
Sbjct: 188 G 188
Score = 37.4 bits (85), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 27/63 (42%), Gaps = 3/63 (4%)
Query: 9 TIFCNPEAAPKPKFVWKKDGNIIG---SGGRRKIFENGNLLISPVSRDDSGIYSCTATNV 65
T+ C P P+ W KD + S GR K +G L I D G Y C A+N
Sbjct: 127 TMLCAASGNPDPEITWFKDFLPVDPSTSNGRIKQLRSGGLQIESSEETDQGKYECVASNS 186
Query: 66 HGM 68
G+
Sbjct: 187 AGV 189
>pdb|2ED9|A Chain A, Solution Structure Of The Third Fibronectin Type Iii
Domain Of Human Netrin Receptor Dcc
Length = 124
Score = 49.7 bits (117), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 35/119 (29%), Positives = 54/119 (45%), Gaps = 5/119 (4%)
Query: 370 NDVGPGPESEVVTIFSAEDMPQVAPQGVFSRGFNSTAINVTWNPIELIRENIRGRLIGHR 429
N GPG ++ +T+ + D+P PQ V NS +I V+W P +N G + G++
Sbjct: 8 NRYGPGVSTDDITVVTLSDVPSAPPQNVSLEVVNSRSIKVSWLPPPSGTQN--GFITGYK 65
Query: 430 IKYWKEDNPEETAVYYLSRTTRNWALIVGLQPDTKYYVKVMAYNNAGEGPESERYLERT 488
I++ K E + W L GL+ ++Y +V A G GP S Y T
Sbjct: 66 IRHRKTTRRGEMETLEPNNL---WYLFTGLEKGSQYSFQVSAMTVNGTGPPSNWYTAET 121
Score = 31.2 bits (69), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 26/108 (24%), Positives = 42/108 (38%), Gaps = 4/108 (3%)
Query: 473 NNAGEGPESERYLERTYRKAPQKPPSAVHIKGINPTTVHVTWRYVSPSFEEEPIIGYKVR 532
N G G ++ T P PP V ++ +N ++ V+W + I GYK+R
Sbjct: 8 NRYGPGVSTDDITVVTLSDVPSAPPQNVSLEVVNSRSIKVSWLPPPSGTQNGFITGYKIR 67
Query: 533 VWEVDQDMSRANDTIIPVGNTLDADIVDLSPGKRYHMRVLAFSNGGDG 580
+ +R + N L L G +Y +V A + G G
Sbjct: 68 ----HRKTTRRGEMETLEPNNLWYLFTGLEKGSQYSFQVSAMTVNGTG 111
>pdb|2NZI|A Chain A, Crystal Structure Of Domains A168-A170 From Titin
pdb|2NZI|B Chain B, Crystal Structure Of Domains A168-A170 From Titin
Length = 305
Score = 49.7 bits (117), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 76/302 (25%), Positives = 109/302 (36%), Gaps = 49/302 (16%)
Query: 7 NVTIFCNPEAAPKPKFVWKKDGN-IIGSGGRRKI--FENG--NLLISPVSRDDSGIYSCT 61
N T+ C PKP W + G II G + +I F+ G L+I+ V+ DD+ +Y
Sbjct: 21 NATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGGYHQLIIASVTDDDATVYQVR 80
Query: 62 ATNVHGMDESKGRLIV-----LHGPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYI 116
ATN G L V +H P E + + A R + D
Sbjct: 81 ATNQGGSVSGTASLEVEVPAKIHLPKTLEGMG---AVHALRGEVVSIKIPFSGKPDPVIT 137
Query: 117 WTHNGVRIGNMDLNELETPNINIDGGLLEITNASFA-----------DAGEYECVVKSTV 165
W DL I+ +G I SF DAG Y K+
Sbjct: 138 WQK------GQDL-------IDNNGHYQVIVTRSFTSLVFPNGVERKDAGFYVVCAKNRF 184
Query: 166 GKISTKTTXXXXXXXXXXXXXXXXXXHKTSATIQWTDGATN-GRPITHYKIIARTNWNST 224
G + S + WT+ A++ G IT+Y +
Sbjct: 185 GIDQKTVELDVADVPDPPRGVKVSDVSRDSVNLTWTEPASDGGSKITNYIVEKCATTAER 244
Query: 225 WFNVSEHVIGKEVDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPSPQYNTPA 284
W V + +E RYT + N L ++Y+F+VIA N+ G +PS PS T
Sbjct: 245 WLRVGQ---ARET-RYT------VIN-LFGKTSYQFRVIAENKFGLSKPSEPSEPTITKE 293
Query: 285 DK 286
DK
Sbjct: 294 DK 295
Score = 33.1 bits (74), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 37/85 (43%), Gaps = 4/85 (4%)
Query: 1 YAGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGNL--LISP--VSRDDSG 56
+A G V+I P P W+K ++I + G ++ + L+ P V R D+G
Sbjct: 115 HALRGEVVSIKIPFSGKPDPVITWQKGQDLIDNNGHYQVIVTRSFTSLVFPNGVERKDAG 174
Query: 57 IYSCTATNVHGMDESKGRLIVLHGP 81
Y A N G+D+ L V P
Sbjct: 175 FYVVCAKNRFGIDQKTVELDVADVP 199
>pdb|2VRA|A Chain A, Drosophila Robo Ig1-2 (Monoclinic Form)
pdb|2VRA|B Chain B, Drosophila Robo Ig1-2 (Monoclinic Form)
pdb|2VRA|C Chain C, Drosophila Robo Ig1-2 (Monoclinic Form)
pdb|2VRA|D Chain D, Drosophila Robo Ig1-2 (Monoclinic Form)
Length = 208
Score = 49.3 bits (116), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 43/167 (25%), Positives = 70/167 (41%), Gaps = 9/167 (5%)
Query: 9 TIFCNPEAAPKPKFVWKKDGNIIGSGGR---RKIFENGNLL----ISPVSRDDSGIYSCT 61
T+ C E P+P W KDG + + + R F++G L + D G Y C
Sbjct: 28 TLNCKVEGKPEPTIEWFKDGEPVSTNEKKSHRVQFKDGALFFYRTMQGKKEQDGGEYWCV 87
Query: 62 ATNVHGMDESKGRLIVLHGPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNG 121
A N G S+ + + ++ PK T A L + + + IW +G
Sbjct: 88 AKNRVGQAVSRHASLQIAVLRDDFRVEPKDTRVAKGETALLECGPPKGIPEPTLIWIKDG 147
Query: 122 VRIGNMDLNEL-ETPNINI-DGGLLEITNASFADAGEYECVVKSTVG 166
V + ++ + + I DGG L I+N D G Y+C+ ++ VG
Sbjct: 148 VPLDDLKAMSFGASSRVRIVDGGNLLISNVEPIDEGNYKCIAQNLVG 194
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 42/85 (49%), Gaps = 10/85 (11%)
Query: 3 GEGGNVTIFCNP-EAAPKPKFVWKKDGNII--------GSGGRRKIFENGNLLISPVSRD 53
+G + C P + P+P +W KDG + G+ R +I + GNLLIS V
Sbjct: 121 AKGETALLECGPPKGIPEPTLIWIKDGVPLDDLKAMSFGASSRVRIVDGGNLLISNVEPI 180
Query: 54 DSGIYSCTATNVHGMDESK-GRLIV 77
D G Y C A N+ G ES +LIV
Sbjct: 181 DEGNYKCIAQNLVGTRESSYAKLIV 205
>pdb|2VR9|A Chain A, Drosophila Robo Ig1-2 (Tetragonal Form)
pdb|2VR9|B Chain B, Drosophila Robo Ig1-2 (Tetragonal Form)
pdb|2VR9|C Chain C, Drosophila Robo Ig1-2 (Tetragonal Form)
Length = 217
Score = 49.3 bits (116), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 43/167 (25%), Positives = 70/167 (41%), Gaps = 9/167 (5%)
Query: 9 TIFCNPEAAPKPKFVWKKDGNIIGSGGR---RKIFENGNLL----ISPVSRDDSGIYSCT 61
T+ C E P+P W KDG + + + R F++G L + D G Y C
Sbjct: 28 TLNCKVEGKPEPTIEWFKDGEPVSTNEKKSHRVQFKDGALFFYRTMQGKKEQDGGEYWCV 87
Query: 62 ATNVHGMDESKGRLIVLHGPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNG 121
A N G S+ + + ++ PK T A L + + + IW +G
Sbjct: 88 AKNRVGQAVSRHASLQIAVLRDDFRVEPKDTRVAKGETALLECGPPKGIPEPTLIWIKDG 147
Query: 122 VRIGNMDLNEL-ETPNINI-DGGLLEITNASFADAGEYECVVKSTVG 166
V + ++ + + I DGG L I+N D G Y+C+ ++ VG
Sbjct: 148 VPLDDLKAMSFGASSRVRIVDGGNLLISNVEPIDEGNYKCIAQNLVG 194
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 42/85 (49%), Gaps = 10/85 (11%)
Query: 3 GEGGNVTIFCNP-EAAPKPKFVWKKDGNII--------GSGGRRKIFENGNLLISPVSRD 53
+G + C P + P+P +W KDG + G+ R +I + GNLLIS V
Sbjct: 121 AKGETALLECGPPKGIPEPTLIWIKDGVPLDDLKAMSFGASSRVRIVDGGNLLISNVEPI 180
Query: 54 DSGIYSCTATNVHGMDESK-GRLIV 77
D G Y C A N+ G ES +LIV
Sbjct: 181 DEGNYKCIAQNLVGTRESSYAKLIV 205
>pdb|2XY1|A Chain A, Crystal Structure Of Ncam2 Ig3-4
Length = 192
Score = 49.3 bits (116), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 45/173 (26%), Positives = 73/173 (42%), Gaps = 15/173 (8%)
Query: 2 AGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGN--LLISPVSRDDSGIYS 59
A G +T C +P+P W ++G +I + I + N L + + D G Y
Sbjct: 16 AERGEEMTFSCRASGSPEPAISWFRNGKLIEEN-EKYILKGSNTELTVRNIINSDGGPYV 74
Query: 60 CTATNVHGMDESKGRLIVLHGPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTH 119
C ATN G DE + L V P + QL + T + + L C A E + ++ +
Sbjct: 75 CRATNKAGEDEKQAFLQVFVQP-HIIQLKNETTY-ENGQVTLVCDAEGEPIPEITWKRAV 132
Query: 120 NGVRI--GNMDLNELETPNINIDG----GLLEITNASFADAGEYECVVKSTVG 166
+G G+ L+ I + G L I + +D+G Y+C S +G
Sbjct: 133 DGFTFTEGDKSLD----GRIEVKGQHGSSSLHIKDVKLSDSGRYDCEAASRIG 181
>pdb|1RY7|B Chain B, Crystal Structure Of The 3 Ig Form Of Fgfr3c In Complex
With Fgf1
Length = 334
Score = 47.4 bits (111), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 44/177 (24%), Positives = 70/177 (39%), Gaps = 18/177 (10%)
Query: 7 NVTIFCNPEAAPKPKFVWKKDGNIIGS----GGRRKIFENGNLLISPVSRDDSGIYSCTA 62
V C P P W K+G GG + + +L++ V D G Y+C
Sbjct: 140 TVRFRCPAAGNPTPSISWLKNGREFRGEHRIGGIKLRHQQWSLVMESVVPSDRGNYTCVV 199
Query: 63 TNVHGMDESKGRLIVL----HGPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWT 118
N G L VL H P LP T +++ C +++ + ++
Sbjct: 200 ENKFGSIRQTYTLDVLERSPHRPILQAGLPANQTAVLGSDVEFHCKVYSDAQPHIQWL-K 258
Query: 119 H---NGVRIGNMD---LNELETPNINIDGGLLEIT---NASFADAGEYECVVKSTVG 166
H NG ++G + L+T N LE+ N +F DAGEY C+ +++G
Sbjct: 259 HVEVNGSKVGPDGTPYVTVLKTAGANTTDKELEVLSLHNVTFEDAGEYTCLAGNSIG 315
>pdb|1BIH|A Chain A, Crystal Structure Of The Insect Immune Protein Hemolin: A
New Domain Arrangement With Implications For Homophilic
Adhesion
pdb|1BIH|B Chain B, Crystal Structure Of The Insect Immune Protein Hemolin: A
New Domain Arrangement With Implications For Homophilic
Adhesion
Length = 395
Score = 47.4 bits (111), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 26/64 (40%), Positives = 34/64 (53%), Gaps = 2/64 (3%)
Query: 4 EGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTAT 63
+G +VTI C P P VW + + SGGR + ++G L+I V D G Y C AT
Sbjct: 323 QGQDVTIPCKVTGLPAPNVVWSHNAKPL-SGGRATVTDSG-LVIKGVKNGDKGYYGCRAT 380
Query: 64 NVHG 67
N HG
Sbjct: 381 NEHG 384
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 21/79 (26%), Positives = 36/79 (45%), Gaps = 5/79 (6%)
Query: 45 LLISPVSRDDSGIYSCTATNVHGMDESKG-RLIVLHGPSYYEQLPPKITIAAH-RNLQLR 102
LL +D G+Y+C N G + +L V+ P YEQ P K+ + +++ +
Sbjct: 272 LLFKTTLPEDEGVYTCEVDNGVGKPQKHSLKLTVVSAPK-YEQKPEKVIVVKQGQDVTIP 330
Query: 103 CSAHTEELLDVAYIWTHNG 121
C +V +W+HN
Sbjct: 331 CKVTGLPAPNV--VWSHNA 347
Score = 28.9 bits (63), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 34/67 (50%), Gaps = 11/67 (16%)
Query: 14 PEAAPKPKFVWKK-----DGNIIGSGGRRKIFE--NGNLLISPVSRDD-SGIYS--CTAT 63
P A PKP WKK D N + R+I +GNL + V+++D S IY CTA
Sbjct: 125 PNAYPKPLITWKKRLSGADPNADVTDFDRRITAGPDGNLYFTIVTKEDVSDIYKYVCTAK 184
Query: 64 NVHGMDE 70
N +DE
Sbjct: 185 NA-AVDE 190
>pdb|2DM3|A Chain A, Solution Structure Of The Second Ig Domain Of Human
Palladin
Length = 110
Score = 46.6 bits (109), Expect = 4e-05, Method: Composition-based stats.
Identities = 30/86 (34%), Positives = 41/86 (47%), Gaps = 7/86 (8%)
Query: 4 EGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIF--ENG--NLLISPVSRDDSGIYS 59
EG + C P P W+ DG + K+ ENG +L+I PV+ D+GIY+
Sbjct: 23 EGKLCRMDCKVSGLPTPDLSWQLDGKPVRPDSAHKMLVRENGVHSLIIEPVTSRDAGIYT 82
Query: 60 CTATNVHGMDESKGRLIVL---HGPS 82
C ATN G + L+V GPS
Sbjct: 83 CIATNRAGQNSFSLELVVAAKESGPS 108
>pdb|1II4|E Chain E, Crystal Structure Of Ser252trp Apert Mutant Fgf Receptor 2
(Fgfr2) In Complex With Fgf2
pdb|1II4|F Chain F, Crystal Structure Of Ser252trp Apert Mutant Fgf Receptor 2
(Fgfr2) In Complex With Fgf2
pdb|1II4|G Chain G, Crystal Structure Of Ser252trp Apert Mutant Fgf Receptor 2
(Fgfr2) In Complex With Fgf2
pdb|1II4|H Chain H, Crystal Structure Of Ser252trp Apert Mutant Fgf Receptor 2
(Fgfr2) In Complex With Fgf2
Length = 220
Score = 46.6 bits (109), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 42/175 (24%), Positives = 70/175 (40%), Gaps = 16/175 (9%)
Query: 8 VTIFCNPEAAPKPKFVWKKDGNIIGS----GGRRKIFENGNLLISPVSRDDSGIYSCTAT 63
V C P P W K+G GG + ++ +L++ V D G Y+C
Sbjct: 29 VKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVE 88
Query: 64 NVHGMDESKGRLIVL----HGPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYI--W 117
N +G L V+ H P LP + +++ C +++ + +I
Sbjct: 89 NEYGSINHTYHLDVVERWPHRPILQAGLPANASTVVGGDVEFVCKVYSDAQPHIQWIKHV 148
Query: 118 THNGVRIGNMDL---NELETPNINIDGGLLE---ITNASFADAGEYECVVKSTVG 166
NG + G L L+ +N +E I N +F DAGEY C+ +++G
Sbjct: 149 EKNGSKYGPDGLPYLKVLKAAGVNTTDKEIEVLYIRNVTFEDAGEYTCLAGNSIG 203
>pdb|2FDB|P Chain P, Crystal Structure Of Fibroblast Growth Factor (Fgf)8b In
Complex With Fgf Receptor (Fgfr) 2c
pdb|2FDB|R Chain R, Crystal Structure Of Fibroblast Growth Factor (Fgf)8b In
Complex With Fgf Receptor (Fgfr) 2c
Length = 220
Score = 46.2 bits (108), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 42/175 (24%), Positives = 70/175 (40%), Gaps = 16/175 (9%)
Query: 8 VTIFCNPEAAPKPKFVWKKDGNIIGS----GGRRKIFENGNLLISPVSRDDSGIYSCTAT 63
V C P P W K+G GG + ++ +L++ V D G Y+C
Sbjct: 27 VKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVE 86
Query: 64 NVHGMDESKGRLIVL----HGPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYI--W 117
N +G L V+ H P LP + +++ C +++ + +I
Sbjct: 87 NEYGSINHTYHLDVVERSRHRPILQAGLPANASTVVGGDVEFVCKVYSDAQPHIQWIKHV 146
Query: 118 THNGVRIGNMDL---NELETPNINIDGGLLE---ITNASFADAGEYECVVKSTVG 166
NG + G L L+ +N +E I N +F DAGEY C+ +++G
Sbjct: 147 EKNGSKYGPDGLPYLKVLKAAGVNTTDKEIEVLYIRNVTFEDAGEYTCLAGNSIG 201
>pdb|1E0O|B Chain B, Crystal Structure Of A Ternary Fgf1-Fgfr2-Heparin Complex
pdb|1E0O|D Chain D, Crystal Structure Of A Ternary Fgf1-Fgfr2-Heparin Complex
Length = 219
Score = 46.2 bits (108), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 42/175 (24%), Positives = 70/175 (40%), Gaps = 16/175 (9%)
Query: 8 VTIFCNPEAAPKPKFVWKKDGNIIGS----GGRRKIFENGNLLISPVSRDDSGIYSCTAT 63
V C P P W K+G GG + ++ +L++ V D G Y+C
Sbjct: 28 VKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVE 87
Query: 64 NVHGMDESKGRLIVL----HGPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYI--W 117
N +G L V+ H P LP + +++ C +++ + +I
Sbjct: 88 NEYGSINHTYHLDVVERSPHRPILQAGLPANASTVVGGDVEFVCKVYSDAQPHIQWIKHV 147
Query: 118 THNGVRIGNMDL---NELETPNINIDGGLLE---ITNASFADAGEYECVVKSTVG 166
NG + G L L+ +N +E I N +F DAGEY C+ +++G
Sbjct: 148 EKNGSKYGPDGLPYLKVLKAAGVNTTDKEIEVLYIRNVTFEDAGEYTCLAGNSIG 202
>pdb|1IIL|E Chain E, Crystal Structure Of Pro253arg Apert Mutant Fgf Receptor 2
(Fgfr2) In Complex With Fgf2
pdb|1IIL|F Chain F, Crystal Structure Of Pro253arg Apert Mutant Fgf Receptor 2
(Fgfr2) In Complex With Fgf2
pdb|1IIL|G Chain G, Crystal Structure Of Pro253arg Apert Mutant Fgf Receptor 2
(Fgfr2) In Complex With Fgf2
pdb|1IIL|H Chain H, Crystal Structure Of Pro253arg Apert Mutant Fgf Receptor 2
(Fgfr2) In Complex With Fgf2
Length = 220
Score = 46.2 bits (108), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 42/175 (24%), Positives = 70/175 (40%), Gaps = 16/175 (9%)
Query: 8 VTIFCNPEAAPKPKFVWKKDGNIIGS----GGRRKIFENGNLLISPVSRDDSGIYSCTAT 63
V C P P W K+G GG + ++ +L++ V D G Y+C
Sbjct: 29 VKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVE 88
Query: 64 NVHGMDESKGRLIVL----HGPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYI--W 117
N +G L V+ H P LP + +++ C +++ + +I
Sbjct: 89 NEYGSINHTYHLDVVERSRHRPILQAGLPANASTVVGGDVEFVCKVYSDAQPHIQWIKHV 148
Query: 118 THNGVRIGNMDL---NELETPNINIDGGLLE---ITNASFADAGEYECVVKSTVG 166
NG + G L L+ +N +E I N +F DAGEY C+ +++G
Sbjct: 149 EKNGSKYGPDGLPYLKVLKAAGVNTTDKEIEVLYIRNVTFEDAGEYTCLAGNSIG 203
>pdb|1EV2|E Chain E, Crystal Structure Of Fgf2 In Complex With The
Extracellular Ligand Binding Domain Of Fgf Receptor 2
(Fgfr2)
pdb|1EV2|F Chain F, Crystal Structure Of Fgf2 In Complex With The
Extracellular Ligand Binding Domain Of Fgf Receptor 2
(Fgfr2)
pdb|1EV2|G Chain G, Crystal Structure Of Fgf2 In Complex With The
Extracellular Ligand Binding Domain Of Fgf Receptor 2
(Fgfr2)
pdb|1EV2|H Chain H, Crystal Structure Of Fgf2 In Complex With The
Extracellular Ligand Binding Domain Of Fgf Receptor 2
(Fgfr2)
Length = 220
Score = 46.2 bits (108), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 42/175 (24%), Positives = 70/175 (40%), Gaps = 16/175 (9%)
Query: 8 VTIFCNPEAAPKPKFVWKKDGNIIGS----GGRRKIFENGNLLISPVSRDDSGIYSCTAT 63
V C P P W K+G GG + ++ +L++ V D G Y+C
Sbjct: 29 VKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVE 88
Query: 64 NVHGMDESKGRLIVL----HGPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYI--W 117
N +G L V+ H P LP + +++ C +++ + +I
Sbjct: 89 NEYGSINHTYHLDVVERSPHRPILQAGLPANASTVVGGDVEFVCKVYSDAQPHIQWIKHV 148
Query: 118 THNGVRIGNMDL---NELETPNINIDGGLLE---ITNASFADAGEYECVVKSTVG 166
NG + G L L+ +N +E I N +F DAGEY C+ +++G
Sbjct: 149 EKNGSKYGPDGLPYLKVLKAAGVNTTDKEIEVLYIRNVTFEDAGEYTCLAGNSIG 203
>pdb|2EDY|A Chain A, Solution Structures Of The Fn3 Domain Of Human Receptor-
Type Tyrosine-Protein Phosphatase F
Length = 103
Score = 45.4 bits (106), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 46/95 (48%), Gaps = 6/95 (6%)
Query: 394 PQGVFSRGFNSTAINVTWNPIELIRENIRGRLIGHRIKYWKEDNPEETAVYYLSRTTRNW 453
PQ + G ++ + W+P L N GR+I + + + ++ +E + TT
Sbjct: 12 PQNLHVTGLTTSTTELAWDPPVLAERN--GRIISYTVVFRDINSQQELQ----NITTDTR 65
Query: 454 ALIVGLQPDTKYYVKVMAYNNAGEGPESERYLERT 488
+ GL+PDT Y +KV A+ + G GP S RT
Sbjct: 66 FTLTGLKPDTTYDIKVRAWTSKGSGPLSPSIQSRT 100
>pdb|2YD9|A Chain A, Crystal Structure Of The N-Terminal Ig1-3 Module Of Human
Receptor Protein Tyrosine Phosphatase Sigma
Length = 304
Score = 45.4 bits (106), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 47/168 (27%), Positives = 68/168 (40%), Gaps = 21/168 (12%)
Query: 9 TIFCNPEAAPKPKFVWKKDGNII---GSGGRRKIFENGNLLISPVSRDDSGIYSCTATNV 65
T+ C P P+ W KD + S GR K +G L I D G Y C ATN
Sbjct: 127 TMLCAASGNPDPEITWFKDFLPVDPSASNGRIKQLRSGALQIESSEETDQGKYECVATNS 186
Query: 66 HGMDESKGRLI---VLHGPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGV 122
G+ S + V + + LP I N+ + C A + V ++
Sbjct: 187 AGVRYSSPANLYVRVQNVAPRFSILPMSHEIMPGGNVNITCVAVGSPMPYVKWMQ----- 241
Query: 123 RIGNMDLNELETPNINIDGG--LLEITNASFADAGEYECVVKSTVGKI 168
G DL TP ++ G +LE+T+ D+ Y CV S++G I
Sbjct: 242 --GAEDL----TPEDDMPVGRNVLELTDVK--DSANYTCVAMSSLGVI 281
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 45/181 (24%), Positives = 71/181 (39%), Gaps = 32/181 (17%)
Query: 5 GGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKI-FENGN---LLISPV-SRDDSGIYS 59
GG + C PKP+ W K G + S I F+ L I P+ + D +Y
Sbjct: 21 GGVASFVCQATGDPKPRVTWNKKGKKVNSQRFETIEFDESAGAVLRIQPLRTPRDENVYE 80
Query: 60 CTATNVHGMDESKGRLIVLHGPSYYEQLP---------PKITIAAH-RNLQLRCSAHTEE 109
C A N G +L VL +QLP P++ + R + C+A
Sbjct: 81 CVAQNSVGEITVHAKLTVLR----EDQLPSGFPNIDMGPQLKVVERTRTATMLCAASGNP 136
Query: 110 LLDVAYIWTHNGVRI----GNMDLNELETPNINIDGGLLEITNASFADAGEYECVVKSTV 165
D W + + + N + +L + G L+I ++ D G+YECV ++
Sbjct: 137 --DPEITWFKDFLPVDPSASNGRIKQLRS-------GALQIESSEETDQGKYECVATNSA 187
Query: 166 G 166
G
Sbjct: 188 G 188
>pdb|1X5H|A Chain A, The Solution Structure Of The Third Fibronectin Type Iii
Domain Of Human Neogenin
Length = 132
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/109 (28%), Positives = 51/109 (46%), Gaps = 3/109 (2%)
Query: 381 VTIFSAEDMPQVAPQGVFSRGFNSTAINVTWNPIELIRENIRGRLIGHRIKYWKEDNPEE 440
V + + D+P APQ + NS +I + W P +N G++ G++I+Y K +
Sbjct: 9 VAVRTLSDVPSAAPQNLSLEVRNSKSIMIHWQPPAPATQN--GQITGYKIRYRKASRKSD 66
Query: 441 TAVYYLSRTTRNWALIVGLQPDTKYYVKVMAYNNAGEGPESERYLERTY 489
+S T + LI GL T+Y +V A G GP ++ T+
Sbjct: 67 VTETLVSGTQLS-QLIEGLDRGTEYNFRVAALTINGTGPATDWLSAETF 114
Score = 38.1 bits (87), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 43/94 (45%), Gaps = 2/94 (2%)
Query: 487 RTYRKAPQKPPSAVHIKGINPTTVHVTWRYVSPSFEEEPIIGYKVRVWEVDQDMSRANDT 546
RT P P + ++ N ++ + W+ +P+ + I GYK+R + + S +T
Sbjct: 12 RTLSDVPSAAPQNLSLEVRNSKSIMIHWQPPAPATQNGQITGYKIRYRKASRK-SDVTET 70
Query: 547 IIPVGNTLDADIVDLSPGKRYHMRVLAFSNGGDG 580
++ G L I L G Y+ RV A + G G
Sbjct: 71 LVS-GTQLSQLIEGLDRGTEYNFRVAALTINGTG 103
Score = 32.7 bits (73), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 26/98 (26%), Positives = 39/98 (39%), Gaps = 3/98 (3%)
Query: 282 TPADKPYQAPSRXXXXXXXXXDLSISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETLK 341
T +D P AP + I W+P QN YKI +RK + +ETL
Sbjct: 13 TLSDVPSAAPQNLSLEVRNSKSIMIHWQPPAPATQNGQITGYKIRYRKASRKSDVTETLV 72
Query: 342 EYGNVGIAVVRIPSEFYYTEYEVKVQAINDVGPGPESE 379
+ + + TEY +V A+ G GP ++
Sbjct: 73 SGTQLSQLIEGLD---RGTEYNFRVAALTINGTGPATD 107
>pdb|2YD3|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human
Receptor Protein Tyrosine Phosphatase Sigma
Length = 202
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 45/181 (24%), Positives = 71/181 (39%), Gaps = 32/181 (17%)
Query: 5 GGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKI-FENGN---LLISPV-SRDDSGIYS 59
GG + C PKP+ W K G + S I F+ L I P+ + D +Y
Sbjct: 21 GGVASFVCQATGDPKPRVTWNKKGKKVNSQRFETIEFDESAGAVLRIQPLRTPRDENVYE 80
Query: 60 CTATNVHGMDESKGRLIVLHGPSYYEQLP---------PKITIAAH-RNLQLRCSAHTEE 109
C A N G +L VL +QLP P++ + R + C+A
Sbjct: 81 CVAQNSVGEITVHAKLTVLR----EDQLPSGFPNIDMGPQLKVVERTRTATMLCAASGNP 136
Query: 110 LLDVAYIWTHNGVRI----GNMDLNELETPNINIDGGLLEITNASFADAGEYECVVKSTV 165
D W + + + N + +L + G L+I ++ D G+YECV ++
Sbjct: 137 --DPEITWFKDFLPVDPSASNGRIKQLRS-------GALQIESSEETDQGKYECVATNSA 187
Query: 166 G 166
G
Sbjct: 188 G 188
Score = 39.3 bits (90), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 27/64 (42%), Gaps = 3/64 (4%)
Query: 8 VTIFCNPEAAPKPKFVWKKDGNII---GSGGRRKIFENGNLLISPVSRDDSGIYSCTATN 64
T+ C P P+ W KD + S GR K +G L I D G Y C ATN
Sbjct: 126 ATMLCAASGNPDPEITWFKDFLPVDPSASNGRIKQLRSGALQIESSEETDQGKYECVATN 185
Query: 65 VHGM 68
G+
Sbjct: 186 SAGV 189
>pdb|2YD2|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human
Receptor Protein Tyrosine Phosphatase Sigma
Length = 214
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 45/181 (24%), Positives = 71/181 (39%), Gaps = 32/181 (17%)
Query: 5 GGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKI-FENGN---LLISPV-SRDDSGIYS 59
GG + C PKP+ W K G + S I F+ L I P+ + D +Y
Sbjct: 21 GGVASFVCQATGDPKPRVTWNKKGKKVNSQRFETIEFDESAGAVLRIQPLRTPRDENVYE 80
Query: 60 CTATNVHGMDESKGRLIVLHGPSYYEQLP---------PKITIAAH-RNLQLRCSAHTEE 109
C A N G +L VL +QLP P++ + R + C+A
Sbjct: 81 CVAQNSVGEITVHAKLTVLR----EDQLPSGFPNIDMGPQLKVVERTRTATMLCAASGNP 136
Query: 110 LLDVAYIWTHNGVRI----GNMDLNELETPNINIDGGLLEITNASFADAGEYECVVKSTV 165
D W + + + N + +L + G L+I ++ D G+YECV ++
Sbjct: 137 --DPEITWFKDFLPVDPSASNGRIKQLRS-------GALQIESSEETDQGKYECVATNSA 187
Query: 166 G 166
G
Sbjct: 188 G 188
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 27/64 (42%), Gaps = 3/64 (4%)
Query: 8 VTIFCNPEAAPKPKFVWKKDGNII---GSGGRRKIFENGNLLISPVSRDDSGIYSCTATN 64
T+ C P P+ W KD + S GR K +G L I D G Y C ATN
Sbjct: 126 ATMLCAASGNPDPEITWFKDFLPVDPSASNGRIKQLRSGALQIESSEETDQGKYECVATN 185
Query: 65 VHGM 68
G+
Sbjct: 186 SAGV 189
>pdb|3PUC|A Chain A, Atomic Resolution Structure Of Titin Domain M7
Length = 99
Score = 44.7 bits (104), Expect = 2e-04, Method: Composition-based stats.
Identities = 23/63 (36%), Positives = 32/63 (50%), Gaps = 3/63 (4%)
Query: 18 PKPKFVWKKDGNIIGSGGRRKIFENGN---LLISPVSRDDSGIYSCTATNVHGMDESKGR 74
P+P +W KDG I GG+ K+ E+ L I DSG+Y+CT N G S +
Sbjct: 34 PRPTAIWTKDGKAITQGGKYKLSEDKGGFFLEIHKTDTSDSGLYTCTVKNSAGSVSSSCK 93
Query: 75 LIV 77
L +
Sbjct: 94 LTI 96
Score = 31.2 bits (69), Expect = 1.9, Method: Composition-based stats.
Identities = 20/58 (34%), Positives = 29/58 (50%), Gaps = 9/58 (15%)
Query: 116 IWTHNGVRI---GNMDLNELETPNINIDGGLLEITNASFADAGEYECVVKSTVGKIST 170
IWT +G I G L+E + G LEI +D+G Y C VK++ G +S+
Sbjct: 39 IWTKDGKAITQGGKYKLSE------DKGGFFLEIHKTDTSDSGLYTCTVKNSAGSVSS 90
>pdb|1DJS|A Chain A, Ligand-binding Portion Of Fibroblast Growth Factor
Receptor 2 In Complex With Fgf1
Length = 216
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 42/175 (24%), Positives = 69/175 (39%), Gaps = 16/175 (9%)
Query: 8 VTIFCNPEAAPKPKFVWKKDGNIIGS----GGRRKIFENGNLLISPVSRDDSGIYSCTAT 63
V C P P W K+G GG + ++ +L+ V D G Y+C
Sbjct: 29 VKFRCPAGGNPXPTXRWLKNGKEFKQEHRIGGYKVRNQHWSLIXESVVPSDKGNYTCVVE 88
Query: 64 NVHGMDESKGRLIVL----HGPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYI--W 117
N +G L V+ H P LP + +++ C +++ + +I
Sbjct: 89 NEYGSINHTYHLDVVERSPHRPILQAGLPANASTVVGGDVEFVCKVYSDAQPHIQWIKHV 148
Query: 118 THNGVRIGNMDL---NELETPNINIDGGLLE---ITNASFADAGEYECVVKSTVG 166
NG + G L L+ +N +E I N +F DAGEY C+ +++G
Sbjct: 149 EKNGSKYGPDGLPYLKVLKAAGVNTTDKEIEVLYIRNVTFEDAGEYTCLAGNSIG 203
>pdb|3P3Y|A Chain A, Crystal Structure Of Neurofascin Homophilic Adhesion
Complex In Space Group P6522
pdb|3P40|A Chain A, Crystal Structure Of Neurofascin Adhesion Complex In Space
Group P3221
Length = 404
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 42/157 (26%), Positives = 64/157 (40%), Gaps = 11/157 (7%)
Query: 5 GGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGN--LLISPVSRDDSGIYSCTA 62
G ++ + C P P W K G + S + FEN N L I+ VS +DSG Y C A
Sbjct: 237 GMDLLLECIASGVPTPDIAWYKKGGDLPSDKAK--FENFNKALRITNVSEEDSGEYFCLA 294
Query: 63 TNVHGMDESKGRLIVLHGPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGV 122
+N G + V P Y+ P + +A + +L C A+ V W NG
Sbjct: 295 SNKMGSIRHTISVRVKAAP-YWLDEPKNLILAPGEDGRLVCRANGNPKPTVQ--WMVNGE 351
Query: 123 RIGNMDLNELETPNINIDGGLLEITNASFADAGEYEC 159
+ + N PN + G + + + Y+C
Sbjct: 352 PLQSAPPN----PNREVAGDTIIFRDTQISSRAVYQC 384
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 52/180 (28%), Positives = 72/180 (40%), Gaps = 23/180 (12%)
Query: 4 EGGNVTIFCNPE-AAPKPKFVWKKDG-NIIGSGGRRKIFENGNLLISPVSRDDSGI-YSC 60
EG +T+ CNP P P W I R NG+L S V D YSC
Sbjct: 130 EGAPLTLQCNPPPGLPSPVIFWMSSSMEPITQDKRVSQGHNGDLYFSNVMLQDMQTDYSC 189
Query: 61 TATN--VHGMDESKG-RLIVLHGPSYYEQLP----PKITIAAHR-----NLQLRCSAHTE 108
A H + + L VL E+ P P+ T ++ +L L C A
Sbjct: 190 NARFHFTHTIQQKNPFTLKVLTTRGVAERTPSFMYPQGTASSQMVLRGMDLLLECIASGV 249
Query: 109 ELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEITNASFADAGEYECVVKSTVGKI 168
D+A W G G++ ++ + N N L ITN S D+GEY C+ + +G I
Sbjct: 250 PTPDIA--WYKKG---GDLPSDKAKFENFN---KALRITNVSEEDSGEYFCLASNKMGSI 301
>pdb|3OJ2|C Chain C, Crystal Structure Of Fgf1 Complexed With The Ectodomain Of
Fgfr2b Harboring The A172f Pfeiffer Syndrome Mutation
pdb|3OJ2|D Chain D, Crystal Structure Of Fgf1 Complexed With The Ectodomain Of
Fgfr2b Harboring The A172f Pfeiffer Syndrome Mutation
Length = 231
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 43/174 (24%), Positives = 70/174 (40%), Gaps = 14/174 (8%)
Query: 8 VTIFCNPEAAPKPKFVWKKDGNIIGS----GGRRKIFENGNLLISPVSRDDSGIYSCTAT 63
V C P P W K+G GG + ++ +L++ V D G Y+C
Sbjct: 37 VKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVE 96
Query: 64 NVHGMDESKGRLIVL----HGPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYI--W 117
N +G L V+ H P LP + +++ C +++ + +I
Sbjct: 97 NEYGSINHTYHLDVVERSPHRPILQAGLPANASTVVGGDVEFVCKVYSDAQPHIQWIKHV 156
Query: 118 THNGVRIGNMDL---NELETPNINIDGG-LLEITNASFADAGEYECVVKSTVGK 167
NG + G L L+ IN +L + N + ADAGEY C V + +G+
Sbjct: 157 EKNGSKYGPDGLPYLKVLKHSGINSSNAEVLALFNVTEADAGEYICKVSNYIGQ 210
>pdb|3S97|C Chain C, Ptprz Cntn1 Complex
pdb|3S97|D Chain D, Ptprz Cntn1 Complex
Length = 201
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 36/84 (42%), Gaps = 15/84 (17%)
Query: 1 YAGEGGNVTIFCNPEAAPKPKFVWKK-------DGNIIGSGGRRKIFENGNLLISPVSRD 53
YA G NVT+ C P P W+K I SG KIF + +
Sbjct: 124 YALMGQNVTLECFALGNPVPDIRWRKVLEPMPSTAEISTSGAVLKIFN--------IQLE 175
Query: 54 DSGIYSCTATNVHGMDESKGRLIV 77
D GIY C A N+ G D+ + R+ V
Sbjct: 176 DEGIYECEAENIRGKDKHQARIYV 199
>pdb|3OJM|B Chain B, Crystal Structure Of Fgf1 Complexed With The Ectodomain Of
Fgfr2b Harboring P253r Apert Mutation
Length = 231
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 43/174 (24%), Positives = 70/174 (40%), Gaps = 14/174 (8%)
Query: 8 VTIFCNPEAAPKPKFVWKKDGNIIGS----GGRRKIFENGNLLISPVSRDDSGIYSCTAT 63
V C P P W K+G GG + ++ +L++ V D G Y+C
Sbjct: 37 VKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVE 96
Query: 64 NVHGMDESKGRLIVL----HGPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYI--W 117
N +G L V+ H P LP + +++ C +++ + +I
Sbjct: 97 NEYGSINHTYHLDVVERSRHRPILQAGLPANASTVVGGDVEFVCKVYSDAQPHIQWIKHV 156
Query: 118 THNGVRIGNMDL---NELETPNINIDGG-LLEITNASFADAGEYECVVKSTVGK 167
NG + G L L+ IN +L + N + ADAGEY C V + +G+
Sbjct: 157 EKNGSKYGPDGLPYLKVLKHSGINSSNAEVLALFNVTEADAGEYICKVSNYIGQ 210
>pdb|2DLH|A Chain A, Solution Structure Of The Second Fn3 Domain Of Human
Receptor-Type Tyrosine-Protein Phosphatase Delta
Length = 121
Score = 43.1 bits (100), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 36/112 (32%), Positives = 54/112 (48%), Gaps = 9/112 (8%)
Query: 476 GEGPESERYLERTYRKAPQKPPSAVHIKGINPTTVHVTWRYVSPSFEEEP---IIGYKVR 532
G S L +T +AP P V + ++ TT+ V W+ EEP I GY+V
Sbjct: 1 GSSGSSGPVLTQTSEQAPSSAPRDVQARMLSSTTILVQWKE-----PEEPNGQIQGYRV- 54
Query: 533 VWEVDQDMSRANDTIIPVGNTLDADIVDLSPGKRYHMRVLAFSNGGDGRMSS 584
+ +D N V ++ I +L P K Y ++VLAF++ GDG +SS
Sbjct: 55 YYTMDPTQHVNNWMKHNVADSQITTIGNLVPQKTYSVKVLAFTSIGDGPLSS 106
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 47/98 (47%), Gaps = 6/98 (6%)
Query: 385 SAEDMPQVAPQGVFSRGFNSTAINVTWNPIELIRENIRGRLIGHRIKYWKEDNPEETAVY 444
++E P AP+ V +R +ST I V W E G++ G+R+ Y+ D + +
Sbjct: 13 TSEQAPSSAPRDVQARMLSSTTILVQWKE----PEEPNGQIQGYRV-YYTMDPTQHVNNW 67
Query: 445 YLSRTTRNWALIVG-LQPDTKYYVKVMAYNNAGEGPES 481
+ +G L P Y VKV+A+ + G+GP S
Sbjct: 68 MKHNVADSQITTIGNLVPQKTYSVKVLAFTSIGDGPLS 105
>pdb|1YA5|A Chain A, Crystal Structure Of The Titin Domains Z1z2 In Complex
With Telethonin
pdb|1YA5|B Chain B, Crystal Structure Of The Titin Domains Z1z2 In Complex
With Telethonin
pdb|2F8V|A Chain A, Structure Of Full Length Telethonin In Complex With The
N-Terminus Of Titin
pdb|2F8V|B Chain B, Structure Of Full Length Telethonin In Complex With The
N-Terminus Of Titin
pdb|2F8V|C Chain C, Structure Of Full Length Telethonin In Complex With The
N-Terminus Of Titin
pdb|2F8V|D Chain D, Structure Of Full Length Telethonin In Complex With The
N-Terminus Of Titin
Length = 201
Score = 42.4 bits (98), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 44/178 (24%), Positives = 76/178 (42%), Gaps = 20/178 (11%)
Query: 4 EGGNVTIFCNPEAAPKPKFVWKKDGNIIGSG---GRRKIFENG--NLLISPVSRDDSGIY 58
EG T + P P+ W +DG +I + G + F +G L I V++ +SG Y
Sbjct: 19 EGSTATFEAHISGFPVPEVSWFRDGQVISTSTLPGVQISFSDGRAKLTIPAVTKANSGRY 78
Query: 59 SCTATNVHGMDESKGRLIV---LHGPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAY 115
S ATN G S L+V P++ ++L ++ + Q+R +
Sbjct: 79 SLKATNGSGQATSTAELLVKAETAPPNFVQRLQ---SMTVRQGSQVRLQVRVTGIPTPVV 135
Query: 116 IWTHNGVRI-GNMDLNELETPNINIDGGL--LEITNASFADAGEYECVVKSTVGKIST 170
+ +G I ++D I+ +G L L I A D+G Y ++VG+ ++
Sbjct: 136 KFYRDGAEIQSSLDF------QISQEGDLYSLLIAEAYPEDSGTYSVNATNSVGRATS 187
Score = 35.8 bits (81), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 35/77 (45%), Gaps = 3/77 (3%)
Query: 4 EGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGNL---LISPVSRDDSGIYSC 60
+G V + P P + +DG I S +I + G+L LI+ +DSG YS
Sbjct: 117 QGSQVRLQVRVTGIPTPVVKFYRDGAEIQSSLDFQISQEGDLYSLLIAEAYPEDSGTYSV 176
Query: 61 TATNVHGMDESKGRLIV 77
ATN G S L+V
Sbjct: 177 NATNSVGRATSTAELLV 193
>pdb|1NUN|B Chain B, Crystal Structure Analysis Of The Fgf10-fgfr2b Complex
Length = 230
Score = 42.4 bits (98), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 43/174 (24%), Positives = 69/174 (39%), Gaps = 14/174 (8%)
Query: 8 VTIFCNPEAAPKPKFVWKKDGNIIGS----GGRRKIFENGNLLISPVSRDDSGIYSCTAT 63
V C P P W K+G GG + ++ +L+ V D G Y+C
Sbjct: 36 VKFRCPAGGNPXPTXRWLKNGKEFKQEHRIGGYKVRNQHWSLIXESVVPSDKGNYTCVVE 95
Query: 64 NVHGMDESKGRLIVL----HGPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYI--W 117
N +G L V+ H P LP + +++ C +++ + +I
Sbjct: 96 NEYGSINHTYHLDVVERSPHRPILQAGLPANASTVVGGDVEFVCKVYSDAQPHIQWIKHV 155
Query: 118 THNGVRIGNMDL---NELETPNINIDGG-LLEITNASFADAGEYECVVKSTVGK 167
NG + G L L+ IN +L + N + ADAGEY C V + +G+
Sbjct: 156 EKNGSKYGPDGLPYLKVLKHSGINSSNAEVLALFNVTEADAGEYICKVSNYIGQ 209
>pdb|2V5S|A Chain A, Structural Basis For Dscam Isoform Specificity
pdb|2V5S|B Chain B, Structural Basis For Dscam Isoform Specificity
Length = 394
Score = 42.4 bits (98), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 39/164 (23%), Positives = 64/164 (39%), Gaps = 25/164 (15%)
Query: 7 NVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFEN-------GNLLISPVSRDDSGIYS 59
+++ C + P P F W K I G+ ++ + N G L+I +DSG Y
Sbjct: 235 TISLLCPAQGFPAPSFRWYK--FIEGTTRKQAVVLNDRVKQVSGTLIIKDAVVEDSGKYL 292
Query: 60 CTATNVHGMDESKGRLIVLHGPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTH 119
C N G ES ++ + P + PP T+ R C + V+ W
Sbjct: 293 CVVNNSVG-GESVETVLTVTAPLSAKIDPPTQTVDFGRPAVFTCQYTGNPIKTVS--WMK 349
Query: 120 NGVRIGNMDLNELETPNINIDGGLLEITNASFADAGEYECVVKS 163
+G IG+ + +L I + D G Y+C V++
Sbjct: 350 DGKAIGHSE-------------SVLRIESVKKEDKGMYQCFVRN 380
Score = 33.5 bits (75), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 42/154 (27%), Positives = 64/154 (41%), Gaps = 23/154 (14%)
Query: 35 GRRKIFENGNLLISPVSRDDS-GIYSC-TATNVHG---MDESKGRLIVLHGPSYYEQLPP 89
G+ + +G L I V +D Y C T + G + +KGRL++ S P
Sbjct: 162 GKYLVLPSGELHIREVGPEDGYKSYQCRTKHRLTGETRLSATKGRLVITEPIS---SSAP 218
Query: 90 KITIAAHRNLQLRCSAHTEELLDVA----------YIWTHNGVRIGNMDLNELETPNINI 139
+ + L+L AHT LL A Y + R + LN+ +
Sbjct: 219 RTPALVQKPLELMV-AHTISLLCPAQGFPAPSFRWYKFIEGTTRKQAVVLND----RVKQ 273
Query: 140 DGGLLEITNASFADAGEYECVVKSTVGKISTKTT 173
G L I +A D+G+Y CVV ++VG S +T
Sbjct: 274 VSGTLIIKDAVVEDSGKYLCVVNNSVGGESVETV 307
Score = 28.9 bits (63), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 25/71 (35%), Gaps = 8/71 (11%)
Query: 6 GNVTIF-CNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTATN 64
G +F C P W KDG IG L I V ++D G+Y C N
Sbjct: 328 GRPAVFTCQYTGNPIKTVSWMKDGKAIGHS-------ESVLRIESVKKEDKGMYQCFVRN 380
Query: 65 VHGMDESKGRL 75
E+ L
Sbjct: 381 DRESAEASAEL 391
>pdb|2V5M|A Chain A, Structural Basis For Dscam Isoform Specificity
Length = 388
Score = 42.4 bits (98), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 39/164 (23%), Positives = 64/164 (39%), Gaps = 25/164 (15%)
Query: 7 NVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFEN-------GNLLISPVSRDDSGIYS 59
+++ C + P P F W K I G+ ++ + N G L+I +DSG Y
Sbjct: 229 TISLLCPAQGFPAPSFRWYK--FIEGTTRKQAVVLNDRVKQVSGTLIIKDAVVEDSGKYL 286
Query: 60 CTATNVHGMDESKGRLIVLHGPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTH 119
C N G ES ++ + P + PP T+ R C + V+ W
Sbjct: 287 CVVNNSVG-GESVETVLTVTAPLSAKIDPPTQTVDFGRPAVFTCQYTGNPIKTVS--WMK 343
Query: 120 NGVRIGNMDLNELETPNINIDGGLLEITNASFADAGEYECVVKS 163
+G IG+ + +L I + D G Y+C V++
Sbjct: 344 DGKAIGHSE-------------SVLRIESVKKEDKGMYQCFVRN 374
Score = 33.1 bits (74), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 42/154 (27%), Positives = 64/154 (41%), Gaps = 23/154 (14%)
Query: 35 GRRKIFENGNLLISPVSRDDS-GIYSC-TATNVHG---MDESKGRLIVLHGPSYYEQLPP 89
G+ + +G L I V +D Y C T + G + +KGRL++ S P
Sbjct: 156 GKYLVLPSGELHIREVGPEDGYKSYQCRTKHRLTGETRLSATKGRLVITEPIS---SSAP 212
Query: 90 KITIAAHRNLQLRCSAHTEELLDVA----------YIWTHNGVRIGNMDLNELETPNINI 139
+ + L+L AHT LL A Y + R + LN+ +
Sbjct: 213 RTPALVQKPLELMV-AHTISLLCPAQGFPAPSFRWYKFIEGTTRKQAVVLND----RVKQ 267
Query: 140 DGGLLEITNASFADAGEYECVVKSTVGKISTKTT 173
G L I +A D+G+Y CVV ++VG S +T
Sbjct: 268 VSGTLIIKDAVVEDSGKYLCVVNNSVGGESVETV 301
Score = 28.9 bits (63), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 25/71 (35%), Gaps = 8/71 (11%)
Query: 6 GNVTIF-CNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTATN 64
G +F C P W KDG IG L I V ++D G+Y C N
Sbjct: 322 GRPAVFTCQYTGNPIKTVSWMKDGKAIGHS-------ESVLRIESVKKEDKGMYQCFVRN 374
Query: 65 VHGMDESKGRL 75
E+ L
Sbjct: 375 DRESAEASAEL 385
>pdb|2A38|A Chain A, Crystal Structure Of The N-Terminus Of Titin
pdb|2A38|B Chain B, Crystal Structure Of The N-Terminus Of Titin
pdb|2A38|C Chain C, Crystal Structure Of The N-Terminus Of Titin
Length = 194
Score = 42.4 bits (98), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 44/178 (24%), Positives = 76/178 (42%), Gaps = 20/178 (11%)
Query: 4 EGGNVTIFCNPEAAPKPKFVWKKDGNIIGSG---GRRKIFENG--NLLISPVSRDDSGIY 58
EG T + P P+ W +DG +I + G + F +G L I V++ +SG Y
Sbjct: 19 EGSTATFEAHISGFPVPEVSWFRDGQVISTSTLPGVQISFSDGRAKLTIPAVTKANSGRY 78
Query: 59 SCTATNVHGMDESKGRLIV---LHGPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAY 115
S ATN G S L+V P++ ++L ++ + Q+R +
Sbjct: 79 SLKATNGSGQATSTAELLVKAETAPPNFVQRLQ---SMTVRQGSQVRLQVRVTGIPTPVV 135
Query: 116 IWTHNGVRI-GNMDLNELETPNINIDGGL--LEITNASFADAGEYECVVKSTVGKIST 170
+ +G I ++D I+ +G L L I A D+G Y ++VG+ ++
Sbjct: 136 KFYRDGAEIQSSLDF------QISQEGDLYSLLIAEAYPEDSGTYSVNATNSVGRATS 187
Score = 35.8 bits (81), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 35/77 (45%), Gaps = 3/77 (3%)
Query: 4 EGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGNL---LISPVSRDDSGIYSC 60
+G V + P P + +DG I S +I + G+L LI+ +DSG YS
Sbjct: 117 QGSQVRLQVRVTGIPTPVVKFYRDGAEIQSSLDFQISQEGDLYSLLIAEAYPEDSGTYSV 176
Query: 61 TATNVHGMDESKGRLIV 77
ATN G S L+V
Sbjct: 177 NATNSVGRATSTAELLV 193
>pdb|2KKQ|A Chain A, Solution Nmr Structure Of The Ig-Like C2-Type 2 Domain Of
Human Myotilin. Northeast Structural Genomics Target
Hr3158
Length = 116
Score = 41.6 bits (96), Expect = 0.001, Method: Composition-based stats.
Identities = 26/84 (30%), Positives = 39/84 (46%), Gaps = 5/84 (5%)
Query: 4 EGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGN-----LLISPVSRDDSGIY 58
EG +V + C A P PK WK++ ++ R N LLI V++ D+G Y
Sbjct: 29 EGDSVKLECQISAIPPPKLFWKRNNEMVQFNTDRISLYQDNTGRVTLLIKDVNKKDAGWY 88
Query: 59 SCTATNVHGMDESKGRLIVLHGPS 82
+ +A N G+ RL V P+
Sbjct: 89 TVSAVNEAGVTTCNTRLDVTARPN 112
>pdb|2ID5|A Chain A, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|B Chain B, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|C Chain C, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|D Chain D, Crystal Structure Of The Lingo-1 Ectodomain
Length = 477
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 32/80 (40%), Gaps = 3/80 (3%)
Query: 1 YAGEGGNVTIFCNPEAAPKPKFVW---KKDGNIIGSGGRRKIFENGNLLISPVSRDDSGI 57
+ EG V C + P P +W +K S GR +F +G L + D+G
Sbjct: 396 FVDEGHTVQFVCRADGDPPPAILWLSPRKHLVSAKSNGRLTVFPDGTLEVRYAQVQDNGT 455
Query: 58 YSCTATNVHGMDESKGRLIV 77
Y C A N G D L V
Sbjct: 456 YLCIAANAGGNDSMPAHLHV 475
>pdb|3MTR|A Chain A, Crystal Structure Of The Ig5-Fn1 Tandem Of Human Ncam
pdb|3MTR|B Chain B, Crystal Structure Of The Ig5-Fn1 Tandem Of Human Ncam
Length = 215
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 40/87 (45%), Gaps = 5/87 (5%)
Query: 1 YAGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRR--KIFENGN---LLISPVSRDDS 55
Y EG V I C A P W +DG ++ S KI+ + L ++P S +D
Sbjct: 29 YTWEGNQVNITCEVFAYPSATISWFRDGQLLPSSNYSNIKIYNTPSASYLEVTPDSENDF 88
Query: 56 GIYSCTATNVHGMDESKGRLIVLHGPS 82
G Y+CTA N G + + L+ PS
Sbjct: 89 GNYNCTAVNRIGQESLEFILVQADTPS 115
Score = 36.2 bits (82), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 38/144 (26%), Positives = 59/144 (40%), Gaps = 26/144 (18%)
Query: 144 LEITNASFADAGEYECVVKSTVGKISTKTTXXXXXXXXXXXXXXXXXXHKTSATIQWTD- 202
LE+T S D G Y C + +G+ S + + ++A +Q+ +
Sbjct: 78 LEVTPDSENDFGNYNCTAVNRIGQESLEFI-LVQADTPSSPSIDQVEPYSSTAQVQFDEP 136
Query: 203 GATNGRPITHYK----IIARTNWNSTWFNVSEHVIGKEVDRYTGRKEASIENV-----LV 253
AT G PI YK + W+S W++ KEAS+E + L
Sbjct: 137 EATGGVPILKYKAEWRAVGEEVWHSKWYDA---------------KEASMEGIVTIVGLK 181
Query: 254 PWSTYEFKVIAGNELGYGEPSSPS 277
P +TY ++ A N G GE S+ S
Sbjct: 182 PETTYAVRLAALNGKGLGEISAAS 205
>pdb|3V2A|R Chain R, Vegfr-2VEGF-A Complex Structure
Length = 772
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 36/74 (48%), Gaps = 1/74 (1%)
Query: 5 GGNVTIFCNPEAAPKPKFVWKKDG-NIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTAT 63
G ++ + C P P+ +W KD ++ G N NL I V ++D G+Y+C A
Sbjct: 681 GESIEVSCTASGNPPPQIMWFKDNETLVEDSGIVLKDGNRNLTIRRVRKEDEGLYTCQAC 740
Query: 64 NVHGMDESKGRLIV 77
+V G + + I+
Sbjct: 741 SVLGCAKVEAFFII 754
Score = 33.1 bits (74), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 31/125 (24%), Positives = 47/125 (37%), Gaps = 21/125 (16%)
Query: 55 SGIYSCTATNVHGMDESKGRLIVLHGPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVA 114
S +Y C A N G E V GP L P + ++ L C+A ++
Sbjct: 525 SALYKCEAVNKVGRGERVISFHVTRGPEI--TLQPDMQPTEQESVSLWCTADRSTFENLT 582
Query: 115 YIWTHNGVRIGNMDLNELETP-----------------NINIDGGLLEITNASFADAGEY 157
W G + + + EL TP N D ++E+ NAS D G+Y
Sbjct: 583 --WYKLGPQPLPIHVGELPTPVCKNLDTLWKLNATMFSNSTNDILIMELKNASLQDQGDY 640
Query: 158 ECVVK 162
C+ +
Sbjct: 641 VCLAQ 645
>pdb|2Y25|A Chain A, Crystal Structure Of The Myomesin Domains My11-My13
pdb|2Y25|B Chain B, Crystal Structure Of The Myomesin Domains My11-My13
pdb|2Y25|C Chain C, Crystal Structure Of The Myomesin Domains My11-My13
pdb|2Y25|D Chain D, Crystal Structure Of The Myomesin Domains My11-My13
Length = 317
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/129 (27%), Positives = 60/129 (46%), Gaps = 13/129 (10%)
Query: 7 NVTIFCNPEAAPK-PKFVWKKDGNIIGSGGRRKIFENG--NLLISPVSRDDSGIYSCTAT 63
NV + C K VW KD I S + F++G LLI+ S+ D+GIY
Sbjct: 23 NVLLKCKVANIKKETHIVWYKDEREI-SVDEKHDFKDGICTLLITEFSKKDAGIYEVILK 81
Query: 64 NVHGMDESKGRLIVLHGPSYYEQLPPKITIAAHRNLQLRCSAHTEELL--------DVAY 115
+ G D+S+ +L+ ++ KI ++A +L+++ +A +L D+
Sbjct: 82 DDRGKDKSRLKLVDEAFKELMMEVCKKIALSA-TDLKIQSTAEGIQLYSFVTYYVEDLKV 140
Query: 116 IWTHNGVRI 124
W+HNG I
Sbjct: 141 NWSHNGSAI 149
Score = 30.4 bits (67), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 31/72 (43%), Gaps = 4/72 (5%)
Query: 4 EGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKI-FENGN---LLISPVSRDDSGIYS 59
EG + + CN P P+ W K+ + S + FE G I+ VS DSG Y
Sbjct: 236 EGKALNLTCNVWGDPPPEVSWLKNEKALASDDHCNLKFEAGRTAYFTINGVSTADSGKYG 295
Query: 60 CTATNVHGMDES 71
N +G + S
Sbjct: 296 LVVKNKYGSETS 307
>pdb|2EO9|A Chain A, Solution Structure Of The Fifth Ig-Like Domain From
Human Roundabout Homo1
Length = 118
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 31/63 (49%), Gaps = 1/63 (1%)
Query: 6 GNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRR-KIFENGNLLISPVSRDDSGIYSCTATN 64
G + C +P P +W+KDG ++ + R K ENG L I D+G Y+C A+
Sbjct: 24 GTFVLSCVATGSPVPTILWRKDGVLVSTQDSRIKQLENGVLQIRYAKLGDTGRYTCIAST 83
Query: 65 VHG 67
G
Sbjct: 84 PSG 86
Score = 37.7 bits (86), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 37/91 (40%), Gaps = 11/91 (12%)
Query: 79 HGPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMD--LNELETPN 136
GP Q P T+A L C A + + +W +GV + D + +LE
Sbjct: 6 SGPPVIRQGPVNQTVAVDGTFVLSCVATGSPVPTI--LWRKDGVLVSTQDSRIKQLEN-- 61
Query: 137 INIDGGLLEITNASFADAGEYECVVKSTVGK 167
G+L+I A D G Y C+ + G+
Sbjct: 62 -----GVLQIRYAKLGDTGRYTCIASTPSGE 87
>pdb|2LQR|A Chain A, Nmr Structure Of Ig3 Domain Of Palladin
Length = 108
Score = 40.8 bits (94), Expect = 0.003, Method: Composition-based stats.
Identities = 27/79 (34%), Positives = 34/79 (43%), Gaps = 5/79 (6%)
Query: 4 EGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGG-----RRKIFENGNLLISPVSRDDSGIY 58
EG VT C PKPK W KDG I +R + +L + + DD G Y
Sbjct: 21 EGMPVTFTCRVAGNPKPKIYWFKDGKQISPKSDHYTIQRDLDGTCSLHTTASTLDDDGNY 80
Query: 59 SCTATNVHGMDESKGRLIV 77
+ A N G GRL+V
Sbjct: 81 TIMAANPQGRVSCTGRLMV 99
>pdb|2DM2|A Chain A, Solution Structure Of The First Ig Domain Of Human
Palladin
Length = 110
Score = 40.4 bits (93), Expect = 0.003, Method: Composition-based stats.
Identities = 30/87 (34%), Positives = 37/87 (42%), Gaps = 8/87 (9%)
Query: 4 EGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGG-----RRKIFENGNLLISPVSRDDSGIY 58
EG VT C PKPK W KDG I +R + +L + + DD G Y
Sbjct: 22 EGMPVTFTCRVAGNPKPKIYWFKDGKQISPKSDHYTIQRDLDGTCSLHTTASTLDDDGNY 81
Query: 59 SCTATNVHGMDESKGRLIVL---HGPS 82
+ A N G GRL+V GPS
Sbjct: 82 TIMAANPQGRISCTGRLMVQAVNSGPS 108
>pdb|1QZ1|A Chain A, Crystal Structure Of The Ig 1-2-3 Fragment Of Ncam
Length = 291
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 36/167 (21%), Positives = 65/167 (38%), Gaps = 4/167 (2%)
Query: 4 EGGNVTIFCNPEAAPKPKFVWKKDGN--IIGSGGRRKIFENGNLLISPVSRDDSGIYSCT 61
EG + I C+ ++ P +WK G I+ R + N L I + + D G Y C
Sbjct: 114 EGEDAVIVCDVVSSLPPTIIWKHKGRDVILKKDVRFIVLSNNYLQIRGIKKTDEGTYRCE 173
Query: 62 ATNV-HGMDESKGRLIVLHGPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHN 120
+ G K ++++ P + + A+ + + + WT +
Sbjct: 174 GRILARGEINFKDIQVIVNVPPTVQARQSIVNATANLGQSVTLVCDADGFPEPTMSWTKD 233
Query: 121 GVRIGNMDLNELETPNINIDGGLLEITNASFADAGEYECVVKSTVGK 167
G I N + ++ E + D L I N D EY C+ ++ G+
Sbjct: 234 GEPIENEEEDD-EKHIFSDDSSELTIRNVDKNDEAEYVCIAENKAGE 279
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 38/82 (46%), Gaps = 5/82 (6%)
Query: 2 AGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGS---GGRRKIF--ENGNLLISPVSRDDSG 56
A G +VT+ C+ + P+P W KDG I + + IF ++ L I V ++D
Sbjct: 208 ANLGQSVTLVCDADGFPEPTMSWTKDGEPIENEEEDDEKHIFSDDSSELTIRNVDKNDEA 267
Query: 57 IYSCTATNVHGMDESKGRLIVL 78
Y C A N G ++ L V
Sbjct: 268 EYVCIAENKAGEQDASIHLKVF 289
>pdb|1FHG|A Chain A, High Resolution Refinement Of Telokin
Length = 154
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 33/78 (42%), Gaps = 4/78 (5%)
Query: 4 EGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIF--ENGN--LLISPVSRDDSGIYS 59
EG C E P P+ +W KD N + +I E GN L IS V DD Y+
Sbjct: 55 EGSAARFDCKVEGYPDPEVMWFKDDNPVKESRHFQIDYDEEGNCSLTISEVCGDDDAKYT 114
Query: 60 CTATNVHGMDESKGRLIV 77
C A N G L+V
Sbjct: 115 CKAVNSLGEATCTAELLV 132
>pdb|1TLK|A Chain A, X-Ray Structure Determination Of Telokin, The C-Terminal
Domain Of Myosin Light Chain Kinase, At 2.8 Angstroms
Resolution
Length = 154
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 33/78 (42%), Gaps = 4/78 (5%)
Query: 4 EGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIF--ENGN--LLISPVSRDDSGIYS 59
EG C E P P+ +W KD N + +I E GN L IS V DD Y+
Sbjct: 55 EGSAARFDCKVEGYPDPEVMWFKDDNPVKESRHFQIDYDEEGNCSLTISEVCGDDDAKYT 114
Query: 60 CTATNVHGMDESKGRLIV 77
C A N G L+V
Sbjct: 115 CKAVNSLGEATCTAELLV 132
>pdb|2WIM|A Chain A, Crystal Structure Of Ncam2 Ig1-3
pdb|2WIM|B Chain B, Crystal Structure Of Ncam2 Ig1-3
Length = 291
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 35/79 (44%), Gaps = 3/79 (3%)
Query: 2 AGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGN--LLISPVSRDDSGIYS 59
A G +T C +P+P W ++G +I + I + N L + + D G Y
Sbjct: 206 AERGEEMTFSCRASGSPEPAISWFRNGKLIEEN-EKYILKGSNTELTVRNIINSDGGPYV 264
Query: 60 CTATNVHGMDESKGRLIVL 78
C ATN G DE + L V
Sbjct: 265 CRATNKAGEDEKQAFLQVF 283
>pdb|2V5T|A Chain A, Crystal Structure Of Ncam2 Ig2-3
Length = 189
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 35/79 (44%), Gaps = 3/79 (3%)
Query: 2 AGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGN--LLISPVSRDDSGIYS 59
A G +T C +P+P W ++G +I + I + N L + + D G Y
Sbjct: 110 AERGEEMTFSCRASGSPEPAISWFRNGKLIEEN-EKYILKGSNTELTVRNIINSDGGPYV 168
Query: 60 CTATNVHGMDESKGRLIVL 78
C ATN G DE + L V
Sbjct: 169 CRATNKAGEDEKQAFLQVF 187
>pdb|2ILL|A Chain A, Anomalous Substructure Of Titin-A168169
Length = 195
Score = 39.3 bits (90), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 34/66 (51%), Gaps = 5/66 (7%)
Query: 7 NVTIFCNPEAAPKPKFVWKKDGN-IIGSGGRRKI--FENG--NLLISPVSRDDSGIYSCT 61
N T+ C PKP W + G II G + +I F+ G L+I+ V+ DD+ +Y
Sbjct: 19 NATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGGYHQLIIASVTDDDATVYQVR 78
Query: 62 ATNVHG 67
ATN G
Sbjct: 79 ATNQGG 84
Score = 32.0 bits (71), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 36/81 (44%), Gaps = 4/81 (4%)
Query: 1 YAGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGNL--LISP--VSRDDSG 56
+A G V+I P P W+K ++I + G ++ + L+ P V R D+G
Sbjct: 113 HALRGEVVSIKIPFSGKPDPVITWQKGQDLIDNNGHYQVIVTRSFTSLVFPNGVERKDAG 172
Query: 57 IYSCTATNVHGMDESKGRLIV 77
Y A N G+D+ L V
Sbjct: 173 FYVVCAKNRFGIDQKTVELDV 193
>pdb|2J8H|A Chain A, Structure Of The Immunoglobulin Tandem Repeat A168-A169
Of Titin
pdb|2J8O|A Chain A, Structure Of The Immunoglobulin Tandem Repeat Of Titin
A168- A169
pdb|2J8O|B Chain B, Structure Of The Immunoglobulin Tandem Repeat Of Titin
A168- A169
Length = 197
Score = 39.3 bits (90), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 34/66 (51%), Gaps = 5/66 (7%)
Query: 7 NVTIFCNPEAAPKPKFVWKKDGN-IIGSGGRRKI--FENG--NLLISPVSRDDSGIYSCT 61
N T+ C PKP W + G II G + +I F+ G L+I+ V+ DD+ +Y
Sbjct: 21 NATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGGYHQLIIASVTDDDATVYQVR 80
Query: 62 ATNVHG 67
ATN G
Sbjct: 81 ATNQGG 86
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 36/81 (44%), Gaps = 4/81 (4%)
Query: 1 YAGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGNL--LISP--VSRDDSG 56
+A G V+I P P W+K ++I + G ++ + L+ P V R D+G
Sbjct: 115 HALRGEVVSIKIPFSGKPDPVITWQKGQDLIDNNGHYQVIVTRSFTSLVFPNGVERKDAG 174
Query: 57 IYSCTATNVHGMDESKGRLIV 77
Y A N G+D+ L V
Sbjct: 175 FYVVCAKNRFGIDQKTVELDV 195
>pdb|1E07|A Chain A, Model Of Human Carcinoembryonic Antigen By Homology
Modelling And Curve-Fitting To Experimental Solution
Scattering Data
Length = 642
Score = 39.3 bits (90), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 41/177 (23%), Positives = 77/177 (43%), Gaps = 35/177 (19%)
Query: 1 YAGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSC 60
Y G N+++ C+ + P ++ W DGNI ++ E L IS ++ +SG+Y+C
Sbjct: 392 YYRPGVNLSLSCHAASNPPAQYSWLIDGNI-----QQHTQE---LFISNITEKNSGLYTC 443
Query: 61 TATN-VHGMDESKGRLIVLHGPSYYEQLPPKITIAAHRN--------LQLRCSAHTEELL 111
A N G + + I + +L PK +I+++ + + C E
Sbjct: 444 QANNSASGHSRTTVKTITVSA-----EL-PKPSISSNNSKPVEDKDAVAFTCEP---EAQ 494
Query: 112 DVAYIWTHNGVRIGNMDLNELETPNINIDGG--LLEITNASFADAGEYECVVKSTVG 166
+ Y+W NG + +P + + G L + N + DA Y C ++++V
Sbjct: 495 NTTYLWWVNGQSLP-------VSPRLQLSNGNRTLTLFNVTRNDARAYVCGIQNSVS 544
Score = 35.4 bits (80), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 38/153 (24%), Positives = 57/153 (37%), Gaps = 17/153 (11%)
Query: 8 VTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTATNVHG 67
V + C PE W + ++ S + +N L + V+R+D G Y C N
Sbjct: 307 VALTCEPEIQNTTYLWWVNNQSLPVSPRLQLSNDNRTLTLLSVTRNDVGPYECGIQNELS 366
Query: 68 MDESKGRLI-VLHGPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGN 126
+D S ++ VL+GP P NL L C A + Y W +G
Sbjct: 367 VDHSDPVILNVLYGPDDPTISPSYTYYRPGVNLSLSCHAASNP--PAQYSWLIDG----- 419
Query: 127 MDLNELETPNINIDGGLLEITNASFADAGEYEC 159
NI L I+N + ++G Y C
Sbjct: 420 ---------NIQQHTQELFISNITEKNSGLYTC 443
Score = 30.8 bits (68), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 14/61 (22%), Positives = 33/61 (54%), Gaps = 8/61 (13%)
Query: 5 GGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTATN 64
G N+ + C+ + P P++ W+ +G I + +F I+ ++ +++G Y+C +N
Sbjct: 574 GANLNLSCHSASNPSPQYSWRING--IPQQHTQVLF------IAKITPNNNGTYACFVSN 625
Query: 65 V 65
+
Sbjct: 626 L 626
Score = 30.4 bits (67), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 32/144 (22%), Positives = 61/144 (42%), Gaps = 28/144 (19%)
Query: 34 GGRRKIFENGNLLISPVSRDDSGIYSCTATNVHGMD-ESKGRLIVLHGPSYYEQLPPKIT 92
GR I+ N +LLI + ++D+G Y+ ++ E+ G+ V Y +L PK +
Sbjct: 62 SGREIIYPNASLLIQNIIQNDTGFYTLHVIKSDLVNEEATGQFRV------YPEL-PKPS 114
Query: 93 IAAHRN--------LQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGG-- 142
I+++ + + C T+ D Y+W N + +P + + G
Sbjct: 115 ISSNNSKPVEDKDAVAFTCEPETQ---DATYLWWVNNQSLP-------VSPRLQLSNGNR 164
Query: 143 LLEITNASFADAGEYECVVKSTVG 166
L + N + D Y+C ++ V
Sbjct: 165 TLTLFNVTRNDTASYKCETQNPVS 188
>pdb|3KVQ|A Chain A, Crystal Structure Of Vegfr2 Extracellular Domain D7
Length = 108
Score = 38.9 bits (89), Expect = 0.008, Method: Composition-based stats.
Identities = 21/74 (28%), Positives = 36/74 (48%), Gaps = 1/74 (1%)
Query: 5 GGNVTIFCNPEAAPKPKFVWKKDG-NIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTAT 63
G ++ + C P P+ +W KD ++ G N NL I V ++D G+Y+C A
Sbjct: 25 GESIEVSCTASGNPPPQIMWFKDNETLVEDSGIVLKDGNRNLTIRRVRKEDEGLYTCQAC 84
Query: 64 NVHGMDESKGRLIV 77
+V G + + I+
Sbjct: 85 SVLGCAKVEAFFII 98
>pdb|1FNF|A Chain A, Fragment Of Human Fibronectin Encompassing Type-Iii
Repeats 7 Through 10
Length = 368
Score = 38.9 bits (89), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 43/175 (24%), Positives = 71/175 (40%), Gaps = 27/175 (15%)
Query: 422 RGRLIGHRIKYWKED---NPEETAVYYLSRTTRNWALIVGLQPDTKYYVKVMAYNNAGEG 478
R + G+RI++ E P E V + +RN + L P T+Y V ++A N E
Sbjct: 210 RATITGYRIRHHPEHFSGRPREDRVPH----SRNSITLTNLTPGTEYVVSIVALNGREES 265
Query: 479 PESERYLERTYRKAPQKPPSAVHIKGINPTTVHVTWRYVSPSFEEEPIIGYKVRVWEVDQ 538
P L + P + + PT++ ++W + P + VR + +
Sbjct: 266 P-----LLIGQQSTVSDVPRDLEVVAATPTSLLISW--------DAPAV--TVRYYRITY 310
Query: 539 DMSRANDTI----IPVGNTLDADIVDLSPGKRYHMRVLAFSNGGDGRMSSPAITF 589
+ N + +P G+ A I L PG Y + V A + GD SS I+
Sbjct: 311 GETGGNSPVQEFTVP-GSKSTATISGLKPGVDYTITVYAVTGRGDSPASSKPISI 364
Score = 28.9 bits (63), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 13/41 (31%), Positives = 21/41 (51%)
Query: 450 TRNWALIVGLQPDTKYYVKVMAYNNAGEGPESERYLERTYR 490
+++ A I GL+P Y + V A G+ P S + + YR
Sbjct: 327 SKSTATISGLKPGVDYTITVYAVTGRGDSPASSKPISINYR 367
>pdb|1GL4|B Chain B, Nidogen-1 G2PERLECAN IG3 COMPLEX
Length = 98
Score = 38.9 bits (89), Expect = 0.009, Method: Composition-based stats.
Identities = 25/74 (33%), Positives = 35/74 (47%), Gaps = 3/74 (4%)
Query: 5 GGNVTIFCNPEA-APKPKFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTAT 63
G +VT C ++ +P VW + N G R + NG L I V D+G Y CT +
Sbjct: 25 GADVTFICTAKSKSPAYTLVWTRLHN--GKLPSRAMDFNGILTIRNVQPSDAGTYVCTGS 82
Query: 64 NVHGMDESKGRLIV 77
N+ MD+ L V
Sbjct: 83 NMFAMDQGTATLHV 96
>pdb|2DJU|A Chain A, Solution Structures Of The Fn3 Domain Of Human Receptor-
Type Tyrosine-Protein Phosphatase F
Length = 106
Score = 38.5 bits (88), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 30/81 (37%), Positives = 38/81 (46%), Gaps = 12/81 (14%)
Query: 194 TSATIQWTDGATNGRPITHYKIIARTNWNSTWFNVSEHVIGKEVDRYTGRKEASIENVLV 253
TS T+ W G N P+T+Y I R F + V G RY SI L
Sbjct: 22 TSVTLTWDSG--NSEPVTYYGIQYRAAGTEGPF---QEVDGVATTRY------SIGG-LS 69
Query: 254 PWSTYEFKVIAGNELGYGEPS 274
P+S Y F+V+A N +G G PS
Sbjct: 70 PFSEYAFRVLAVNSIGRGPPS 90
Score = 31.6 bits (70), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 20/33 (60%)
Query: 456 IVGLQPDTKYYVKVMAYNNAGEGPESERYLERT 488
I GL P ++Y +V+A N+ G GP SE RT
Sbjct: 65 IGGLSPFSEYAFRVLAVNSIGRGPPSEAVRART 97
Score = 30.0 bits (66), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 37/87 (42%), Gaps = 10/87 (11%)
Query: 303 DLSISWEPLPREKQNAPNIYYKIFWRKKN-DTEFQSETLKEYGNVGIAVVRIPSEFYYTE 361
++++W+ + P YY I +R + FQ E V I ++E
Sbjct: 23 SVTLTWD----SGNSEPVTYYGIQYRAAGTEGPFQ-----EVDGVATTRYSIGGLSPFSE 73
Query: 362 YEVKVQAINDVGPGPESEVVTIFSAED 388
Y +V A+N +G GP SE V + E
Sbjct: 74 YAFRVLAVNSIGRGPPSEAVRARTGEQ 100
>pdb|3LCY|A Chain A, Titin Ig Tandem Domains A164-A165
pdb|3LCY|B Chain B, Titin Ig Tandem Domains A164-A165
pdb|3LCY|C Chain C, Titin Ig Tandem Domains A164-A165
pdb|3LCY|D Chain D, Titin Ig Tandem Domains A164-A165
Length = 197
Score = 38.5 bits (88), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 22/89 (24%), Positives = 39/89 (43%), Gaps = 3/89 (3%)
Query: 5 GGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENG---NLLISPVSRDDSGIYSCT 61
G + C P P W + G + + K+ +G L + ++D G+Y+C
Sbjct: 22 GEAAQLSCQIVGRPLPDIKWYRFGKELIQSRKYKMSSDGRTHTLTVMTEEQEDEGVYTCI 81
Query: 62 ATNVHGMDESKGRLIVLHGPSYYEQLPPK 90
ATN G E+ +L++ P ++ P K
Sbjct: 82 ATNEVGEVETSSKLLLQATPQFHPGYPLK 110
>pdb|1IE5|A Chain A, Nmr Structure Of The Third Immunoglobulin Domain From The
Neural Cell Adhesion Molecule
Length = 107
Score = 38.5 bits (88), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 33/76 (43%), Gaps = 4/76 (5%)
Query: 7 NVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKI----FENGNLLISPVSRDDSGIYSCTA 62
+VT+ C+ + P+P W KDG I + ++ L+I V + D Y C A
Sbjct: 30 SVTLACDADGFPEPTMTWTKDGEPIEQEDNEEKYSFNYDGSELIIKKVDKSDEAEYICIA 89
Query: 63 TNVHGMDESKGRLIVL 78
N G ++ L V
Sbjct: 90 ENKAGEQDATIHLKVF 105
>pdb|4GH7|B Chain B, Crystal Structure Of Anticalin N7a In Complex With
Oncofetal Fibronectin Fragment Fn7b8
pdb|4GH7|D Chain D, Crystal Structure Of Anticalin N7a In Complex With
Oncofetal Fibronectin Fragment Fn7b8
Length = 285
Score = 38.1 bits (87), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 62/277 (22%), Positives = 105/277 (37%), Gaps = 47/277 (16%)
Query: 304 LSISWEPLPREKQNAPNIY-YKIFWRKKNDTEFQSETLKEYGNVGIAVVRIPSEFYYTEY 362
L++SWE + P+I Y+I N Q +L+E + + + EY
Sbjct: 20 LTVSWE-----RSTTPDITGYRITTTPTNGQ--QGNSLEEVVHADQSSCTFDNLSPGLEY 72
Query: 363 EVKVQAINDVGPGPESEVVTIFSAEDMPQVAPQGVFSRGFNSTAINVTWNPIELIRENIR 422
V V + D ES ++ ++PQ+ ++I + W P+
Sbjct: 73 NVSVYTVKD---DKESVPISDTIIPEVPQLTDLSFVD--ITDSSIGLRWTPLN------S 121
Query: 423 GRLIGHRIKYWK--------EDNPEETAVYYLSRTTRNWALIVGLQPDTKYYVKVMAYNN 474
+IG+RI ED + + YY + GL+P Y + V+ N
Sbjct: 122 STIIGYRITVVAAGEGIPIFEDFVDSSVGYYT---------VTGLEPGIDYDISVITLIN 172
Query: 475 AGEGPESERYLERTYRKAPQKPPSAVHIKGINPTTVHVTWRYVSPSFEEEPIIGYKVRVW 534
GE + ++ PP+ + I P T+ VTW PS + + + VR
Sbjct: 173 GGESAPTTLT-----QQTAVPPPTDLRFTNIGPDTMRVTWAP-PPSID---LTNFLVRYS 223
Query: 535 EVDQDMSRANDTIIPVGNTLDADIVDLSPGKRYHMRV 571
V + A +I P N + + +L PG Y + V
Sbjct: 224 PVKNEEDVAELSISPSDNAV--VLTNLLPGTEYVVSV 258
>pdb|3GRW|A Chain A, Fgfr3 In Complex With A Fab
Length = 241
Score = 38.1 bits (87), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 41/176 (23%), Positives = 65/176 (36%), Gaps = 19/176 (10%)
Query: 8 VTIFCNPEAAPKPKFVWKKDGNIIGS----GGRRKIFENGNLLISPVSRDDSGIYSCTAT 63
V C P P W K+G GG + + +L++ V D G Y+C
Sbjct: 33 VRFRCPAAGNPTPSISWLKNGREFRGEHRIGGIKLRHQQWSLVMESVVPSDRGNYTCVVE 92
Query: 64 NVHGMDESKGRLIVL----HGPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTH 119
N G L VL H P LP T +++ C +++ + ++ H
Sbjct: 93 NKFGSIRQTYTLDVLERSPHRPILQAGLPANQTAVLGSDVEFHCKVYSDAQPHIQWL-KH 151
Query: 120 ---NGVRIGN------MDLNELETPNINIDGGLLEITNASFADAGEYECVVKSTVG 166
NG ++G L + ++ D L + N S D GEY C + +G
Sbjct: 152 VEVNGSKVGPDGTPYVTVLKSWISESVEADV-RLRLANVSERDGGEYLCRATNFIG 206
Score = 32.3 bits (72), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 26/97 (26%), Positives = 40/97 (41%), Gaps = 16/97 (16%)
Query: 5 GGNVTIFCNPEAAPKPKFVWKK----DGNIIGSGG-----------RRKIFENGNLLISP 49
G +V C + +P W K +G+ +G G + + L ++
Sbjct: 129 GSDVEFHCKVYSDAQPHIQWLKHVEVNGSKVGPDGTPYVTVLKSWISESVEADVRLRLAN 188
Query: 50 VSRDDSGIYSCTATNVHGMDESKGRLIVLHGPSYYEQ 86
VS D G Y C ATN G+ E K + +HGP E+
Sbjct: 189 VSERDGGEYLCRATNFIGVAE-KAFWLSVHGPRAAEE 224
>pdb|3T1W|A Chain A, Structure Of The Four-Domain Fragment Fn7b89 Of Oncofetal
Fibronectin
Length = 375
Score = 38.1 bits (87), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 62/277 (22%), Positives = 105/277 (37%), Gaps = 47/277 (16%)
Query: 304 LSISWEPLPREKQNAPNIY-YKIFWRKKNDTEFQSETLKEYGNVGIAVVRIPSEFYYTEY 362
L++SWE + P+I Y+I N Q +L+E + + + EY
Sbjct: 20 LTVSWE-----RSTTPDITGYRITTTPTNGQ--QGNSLEEVVHADQSSCTFDNLSPGLEY 72
Query: 363 EVKVQAINDVGPGPESEVVTIFSAEDMPQVAPQGVFSRGFNSTAINVTWNPIELIRENIR 422
V V + D ES ++ ++PQ+ ++I + W P+
Sbjct: 73 NVSVYTVKD---DKESVPISDTIIPEVPQLTDLSFVD--ITDSSIGLRWTPLN------S 121
Query: 423 GRLIGHRIKYWK--------EDNPEETAVYYLSRTTRNWALIVGLQPDTKYYVKVMAYNN 474
+IG+RI ED + + YY + GL+P Y + V+ N
Sbjct: 122 STIIGYRITVVAAGEGIPIFEDFVDSSVGYYT---------VTGLEPGIDYDISVITLIN 172
Query: 475 AGEGPESERYLERTYRKAPQKPPSAVHIKGINPTTVHVTWRYVSPSFEEEPIIGYKVRVW 534
GE + ++ PP+ + I P T+ VTW PS + + + VR
Sbjct: 173 GGESAPTTLT-----QQTAVPPPTDLRFTNIGPDTMRVTWAP-PPSID---LTNFLVRYS 223
Query: 535 EVDQDMSRANDTIIPVGNTLDADIVDLSPGKRYHMRV 571
V + A +I P N + + +L PG Y + V
Sbjct: 224 PVKNEEDVAELSISPSDNAV--VLTNLLPGTEYVVSV 258
Score = 30.4 bits (67), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 29/61 (47%), Gaps = 7/61 (11%)
Query: 422 RGRLIGHRIKYWKED---NPEETAVYYLSRTTRNWALIVGLQPDTKYYVKVMAYNNAGEG 478
R + G+RI++ E P E V + +RN + L P T+Y V ++A N E
Sbjct: 302 RATITGYRIRHHPEHFSGRPREDRVPH----SRNSITLTNLTPGTEYVVSIVALNGREES 357
Query: 479 P 479
P
Sbjct: 358 P 358
>pdb|3N1G|C Chain C, Crystal Structure Of Dhhn Bound To Bocfn3
pdb|3N1G|D Chain D, Crystal Structure Of Dhhn Bound To Bocfn3
pdb|3N1M|C Chain C, Crystal Structure Of Ihhn Bound To Bocfn3
pdb|3N1P|C Chain C, Crystal Structure Of Ihhn Bound To Bocfn3
Length = 111
Score = 38.1 bits (87), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 23/96 (23%), Positives = 37/96 (38%)
Query: 493 PQKPPSAVHIKGINPTTVHVTWRYVSPSFEEEPIIGYKVRVWEVDQDMSRANDTIIPVGN 552
P P +N TT+ + W Y+ S PI G+ + D D + G+
Sbjct: 6 PVAGPYITFTDAVNETTIMLKWMYIPASNNNTPIHGFYIYYRPTDSDNDSDYKKDMVEGD 65
Query: 553 TLDADIVDLSPGKRYHMRVLAFSNGGDGRMSSPAIT 588
I L P Y +++ F+ GG+ S+ I
Sbjct: 66 KYWHSISHLQPETSYDIKMQCFNEGGESEFSNVMIC 101
Score = 33.5 bits (75), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 38/92 (41%), Gaps = 9/92 (9%)
Query: 390 PQVAPQGVFSRGFNSTAINVTWNPIELIREN--IRGRLIGHRIKYWKEDNPEETAVYY-- 445
P P F+ N T I + W I N I G I Y++ + + + Y
Sbjct: 6 PVAGPYITFTDAVNETTIMLKWMYIPASNNNTPIHGFYI-----YYRPTDSDNDSDYKKD 60
Query: 446 LSRTTRNWALIVGLQPDTKYYVKVMAYNNAGE 477
+ + W I LQP+T Y +K+ +N GE
Sbjct: 61 MVEGDKYWHSISHLQPETSYDIKMQCFNEGGE 92
>pdb|2Y23|A Chain A, Crystal Structure Of The Myomesin Domains My9-My11
Length = 312
Score = 38.1 bits (87), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 39/95 (41%), Gaps = 10/95 (10%)
Query: 11 FCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGN---LLISPVSRDDSGIYSCTATNVHG 67
F + PK +F W KD R ++ GN + + DD GIYSC T+ G
Sbjct: 23 FECDKMTPKSEFSWSKDYVSTEDSPRLEVESKGNKTKMTFKDLGMDDLGIYSCDVTDTDG 82
Query: 68 M-------DESKGRLIVLHGPSYYEQLPPKITIAA 95
+ +E RL+ L + +P K +A
Sbjct: 83 IASSYLIDEEELKRLLALSHEHKFPTVPVKSELAV 117
Score = 33.9 bits (76), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 36/73 (49%), Gaps = 4/73 (5%)
Query: 7 NVTIFCNPEAAPKP-KFVWKKDGNIIGSGGRRKIFENG--NLLISPVSRDDSGIYSCTAT 63
NV + C K VW KD I S + F++G LLI+ S+ D+GIY
Sbjct: 238 NVLLKCKVANIKKETHIVWYKDEREI-SVDEKHDFKDGICTLLITEFSKKDAGIYEVILK 296
Query: 64 NVHGMDESKGRLI 76
+ G D+S+ +L+
Sbjct: 297 DDRGKDKSRLKLV 309
>pdb|1NCT|A Chain A, Titin Module M5, N-Terminally Extended, Nmr
pdb|1NCU|A Chain A, Titin Module M5, N-Terminally Extended, Nmr
Length = 106
Score = 37.7 bits (86), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 19/77 (24%), Positives = 31/77 (40%), Gaps = 3/77 (3%)
Query: 4 EGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFEN---GNLLISPVSRDDSGIYSC 60
EG + C+ + P P W + G ++ + R ++ IS V D G YS
Sbjct: 28 EGESARFSCDTDGEPVPTVTWLRKGQVLSTSARHQVTTTKYKSTFEISSVQASDEGNYSV 87
Query: 61 TATNVHGMDESKGRLIV 77
N G E++ L +
Sbjct: 88 VVENSEGKQEAEFTLTI 104
>pdb|1TNM|A Chain A, Tertiary Structure Of An Immunoglobulin-Like Domain From
The Muscle Protein Titin: A New Member Of The I Set
pdb|1TNN|A Chain A, Tertiary Structure Of An Immunoglobulin-Like Domain From
The Muscle Protein Titin: A New Member Of The I Set
Length = 100
Score = 37.7 bits (86), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 19/77 (24%), Positives = 31/77 (40%), Gaps = 3/77 (3%)
Query: 4 EGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFEN---GNLLISPVSRDDSGIYSC 60
EG + C+ + P P W + G ++ + R ++ IS V D G YS
Sbjct: 22 EGESARFSCDTDGEPVPTVTWLRKGQVLSTSARHQVTTTKYKSTFEISSVQASDEGNYSV 81
Query: 61 TATNVHGMDESKGRLIV 77
N G E++ L +
Sbjct: 82 VVENSEGKQEAEFTLTI 98
>pdb|3R8Q|A Chain A, Structure Of Fibronectin Domain 12-14
Length = 290
Score = 37.7 bits (86), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 43/160 (26%), Positives = 65/160 (40%), Gaps = 23/160 (14%)
Query: 325 IFWRKKNDT--EFQSETLKEYGNVGIAVVRIPSEFYYT--------EYEVKVQAINDVGP 374
I WR K +T FQ + + G I P YT +Y++ + +ND
Sbjct: 131 ISWRTKTETITGFQVDAVPANGQTPIQRTIKPDVRSYTITGLQPGTDYKIYLYTLNDNA- 189
Query: 375 GPESEVVTIFSAEDMPQVAPQGVFSRGFNSTAINVTWNPIELIRENIRGRLIGHRIKYWK 434
S V I ++ + AP + ++ V+W P R R+ G+ IKY K
Sbjct: 190 --RSSPVVIDASTAID--APSNLRFLATTPNSLLVSWQPP-------RARITGYIIKYEK 238
Query: 435 EDNPEETAVYYLSRTTRNWALIVGLQPDTKYYVKVMAYNN 474
+P V R A I GL+P T+Y + V+A N
Sbjct: 239 PGSPPREVVPR-PRPGVTEATITGLEPGTEYTIYVIALKN 277
>pdb|1X4Y|A Chain A, Solution Structure Of The 3rd Fibronectin Type Iii Domain
From Mouse Biregional Cell Adhesion
Molecule-RelatedDOWN- Regulated Oncogenes (Cdon) Binding
Protein
Length = 114
Score = 37.4 bits (85), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 23/97 (23%), Positives = 37/97 (38%)
Query: 492 APQKPPSAVHIKGINPTTVHVTWRYVSPSFEEEPIIGYKVRVWEVDQDMSRANDTIIPVG 551
P P +N TT+ + W Y+ S PI G+ + D D + G
Sbjct: 7 GPVAGPYITFTDAVNETTIMLKWMYIPASNNNTPIHGFYIYYRPTDSDNDSDYKKDMVEG 66
Query: 552 NTLDADIVDLSPGKRYHMRVLAFSNGGDGRMSSPAIT 588
+ I L P Y +++ F+ GG+ S+ I
Sbjct: 67 DRYWHSISHLQPETSYDIKMQCFNEGGESEFSNVMIC 103
Score = 35.8 bits (81), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 33/119 (27%), Positives = 46/119 (38%), Gaps = 11/119 (9%)
Query: 385 SAEDMPQVAPQGVFSRGFNSTAINVTWNPIELIREN--IRGRLIGHRIKYWKEDNPEETA 442
S P P F+ N T I + W I N I G I Y++ + + +
Sbjct: 3 SGSSGPVAGPYITFTDAVNETTIMLKWMYIPASNNNTPIHGFYI-----YYRPTDSDNDS 57
Query: 443 VYY--LSRTTRNWALIVGLQPDTKYYVKVMAYNNAGEGPESERYLERTYRKAPQKPPSA 499
Y + R W I LQP+T Y +K+ +N GE S + T KA P S
Sbjct: 58 DYKKDMVEGDRYWHSISHLQPETSYDIKMQCFNEGGESEFSNVMICET--KARSGPSSG 114
>pdb|1FNH|A Chain A, Crystal Structure Of Heparin And Integrin Binding Segment
Of Human Fibronectin
Length = 271
Score = 37.4 bits (85), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 43/160 (26%), Positives = 65/160 (40%), Gaps = 23/160 (14%)
Query: 325 IFWRKKNDT--EFQSETLKEYGNVGIAVVRIPSEFYYT--------EYEVKVQAINDVGP 374
I WR K +T FQ + + G I P YT +Y++ + +ND
Sbjct: 112 ISWRTKTETITGFQVDAVPANGQTPIQRTIKPDVRSYTITGLQPGTDYKIYLYTLNDNA- 170
Query: 375 GPESEVVTIFSAEDMPQVAPQGVFSRGFNSTAINVTWNPIELIRENIRGRLIGHRIKYWK 434
S V I ++ + AP + ++ V+W P R R+ G+ IKY K
Sbjct: 171 --RSSPVVIDASTAID--APSNLRFLATTPNSLLVSWQPP-------RARITGYIIKYEK 219
Query: 435 EDNPEETAVYYLSRTTRNWALIVGLQPDTKYYVKVMAYNN 474
+P V R A I GL+P T+Y + V+A N
Sbjct: 220 PGSPPREVVPR-PRPGVTEATITGLEPGTEYTIYVIALKN 258
>pdb|3O4O|C Chain C, Crystal Structure Of An Interleukin-1 Receptor Complex
Length = 339
Score = 37.4 bits (85), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 38/157 (24%), Positives = 66/157 (42%), Gaps = 19/157 (12%)
Query: 16 AAPKPKFVWKKDGN---IIGSGGRRKIFENGNLLISPVSRDDSGIYSCTATNVHGMDESK 72
+P+ W K+ + + G R ++G L + P ++DSG Y CT N D+
Sbjct: 51 VSPRINLTWHKNDSARTVPGEEETRMWAQDGALWLLPALQEDSGTYVCTTRNASYCDKMS 110
Query: 73 GRLIVLHGPSYYEQLP----PKITIAAHRNLQLRC---SAHTEELLDVAYIWTHNGVRIG 125
L V + LP P+I + + L C S T + DV W +
Sbjct: 111 IELRVFENTDAF--LPFISYPQILTLSTSGV-LVCPDLSEFTRDKTDVKIQWYKD----- 162
Query: 126 NMDLNELETPNINIDGGL-LEITNASFADAGEYECVV 161
++ L++ +++ G L + + + DAG Y CV+
Sbjct: 163 SLLLDKDNEKFLSVRGTTHLLVHDVALEDAGYYRCVL 199
Score = 28.9 bits (63), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 14/48 (29%), Positives = 23/48 (47%), Gaps = 2/48 (4%)
Query: 21 KFVWKKDGNIIGSGGRRKIFENG--NLLISPVSRDDSGIYSCTATNVH 66
K W KD ++ + + G +LL+ V+ +D+G Y C T H
Sbjct: 156 KIQWYKDSLLLDKDNEKFLSVRGTTHLLVHDVALEDAGYYRCVLTFAH 203
>pdb|1KOA|A Chain A, Twitchin Kinase Fragment (C.Elegans), Autoregulated
Protein Kinase And Immunoglobulin Domains
Length = 491
Score = 36.6 bits (83), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 31/72 (43%), Gaps = 3/72 (4%)
Query: 2 AGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGN---LLISPVSRDDSGIY 58
GEG + +C A+ P W KD + + NGN L I+ V DD G Y
Sbjct: 388 VGEGQSANFYCRVIASSPPVVTWHKDDRELKQSVKYMKRYNGNDYGLTINRVKGDDKGEY 447
Query: 59 SCTATNVHGMDE 70
+ A N +G E
Sbjct: 448 TVRAKNSYGTKE 459
>pdb|3UTO|A Chain A, Twitchin Kinase Region From C.Elegans
(Fn31-Nl-Kin-Crd-Ig26)
pdb|3UTO|B Chain B, Twitchin Kinase Region From C.Elegans
(Fn31-Nl-Kin-Crd-Ig26)
Length = 573
Score = 36.6 bits (83), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 31/71 (43%), Gaps = 3/71 (4%)
Query: 3 GEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGN---LLISPVSRDDSGIYS 59
GEG + +C A+ P W KD + + NGN L I+ V DD G Y+
Sbjct: 495 GEGQSANFYCRVIASSPPVVTWHKDDRELKQSVKYMKRYNGNDYGLTINRVKGDDKGEYT 554
Query: 60 CTATNVHGMDE 70
A N +G E
Sbjct: 555 VRAKNSYGTKE 565
>pdb|4GO6|B Chain B, Crystal Structure Of Hcf-1 Self-Association Sequence 1
pdb|4GO6|D Chain D, Crystal Structure Of Hcf-1 Self-Association Sequence 1
Length = 232
Score = 36.2 bits (82), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 37/138 (26%), Positives = 50/138 (36%), Gaps = 5/138 (3%)
Query: 459 LQPDTKYYVKVMAYNNAGEGPESERYLERTYRKAPQKPPSAVHIKGINPTTVHVTWRYVS 518
LQP T Y +V N G GP SE +T P A+ I +P H+TW
Sbjct: 53 LQPGTAYKFRVAGINACGRGPFSEISAFKTCLPGFPGAPCAIKISK-SPDGAHLTWE--P 109
Query: 519 PSFEEEPIIGYKVRVWEVDQDMSRANDTIIPVGNTLDADIVDLSPGKRYHMRVLAFSNGG 578
PS II Y V+ Q + L V P ++ + SN
Sbjct: 110 PSVTSGKIIEYS--VYLAIQSSQAGGELKSSTPAQLAFXRVYCGPSPSCLVQSSSLSNAH 167
Query: 579 DGRMSSPAITFQMGEEKE 596
+ PAI F++ E
Sbjct: 168 IDYTTKPAIIFRIAARNE 185
>pdb|1NBQ|A Chain A, Crystal Structure Of Human Junctional Adhesion Molecule
Type 1
pdb|1NBQ|B Chain B, Crystal Structure Of Human Junctional Adhesion Molecule
Type 1
Length = 209
Score = 35.8 bits (81), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 45/180 (25%), Positives = 65/180 (36%), Gaps = 19/180 (10%)
Query: 4 EGGNVTIFCNPEAAPKPKFVWKKD-----------GNIIGSGGRRKIFENGNLLISPVSR 52
E V + C P+ WK D I S R F + V+R
Sbjct: 18 ENNPVKLSCAYSGFSSPRVEWKFDQGDTTRLVCYNNKITASYEDRVTFLPTGITFKSVTR 77
Query: 53 DDSGIYSCTATNVHGMD--ESKGRLIVLHGPSYYEQLPPKITIAAHRNLQLRCSAHTEEL 110
+D+G Y+C + G E K +LIVL PS P +R + L CS +
Sbjct: 78 EDTGTYTCMVSEEGGNSYGEVKVKLIVLVPPSKPTVNIPSSATIGNRAV-LTCSEQ-DGS 135
Query: 111 LDVAYIWTHNGVRIGNMDLNELETPN----INIDGGLLEITNASFADAGEYECVVKSTVG 166
Y W +G+ + + N +N G L S +D GEY C ++ G
Sbjct: 136 PPSEYTWFKDGIVMPTNPKSTRAFSNSSYVLNPTTGELVFDPLSASDTGEYSCEARNGYG 195
>pdb|1X5I|A Chain A, The Solution Structure Of The Fourth Fibronectin Type Iii
Domain Of Human Neogenin
Length = 126
Score = 35.8 bits (81), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 41/92 (44%), Gaps = 8/92 (8%)
Query: 405 TAINVTWNPIELIRENIRGRLIGHRIKYWKEDNPEETAVYYLSRTTRNWALIVGLQPDTK 464
T+I V+W P E +RG IG+ I + + V Y R + I L P +
Sbjct: 41 TSIVVSWTPPENQNIVVRGYAIGYGIG---SPHAQTIKVDYKQR----YYTIENLDPSSH 93
Query: 465 YYVKVMAYNNAGEG-PESERYLERTYRKAPQK 495
Y + + A+NN GEG P E + R + P
Sbjct: 94 YVITLKAFNNVGEGIPLYESAVTRPHTSGPSS 125
>pdb|1VA9|A Chain A, Solution Structure Of The Second Fniii Domain Of Dscaml1
Protein
Length = 122
Score = 35.8 bits (81), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 30/110 (27%), Positives = 50/110 (45%), Gaps = 6/110 (5%)
Query: 488 TYRKAPQKPPSAVHIKGINPTTVHVTWRYVSPSFEEEPIIGYKVRVWEVDQDMSRANDTI 547
T AP PP V ++ + ++ VTW+ + I GY++ E + S +I
Sbjct: 10 TEEAAPDGPPMDVTLQPVTSQSIQVTWKAPKKELQNGVIRGYQIGYRE-NSPGSNGQYSI 68
Query: 548 IPVGNTLDADIVDLSPGKR---YHMRVLAFSNGGDGRMSSP--AITFQMG 592
+ + T D+++ L K+ Y + V AF+ G G SS A T + G
Sbjct: 69 VEMKATGDSEVYTLDNLKKFAQYGVVVQAFNRAGTGPSSSEINATTLESG 118
Score = 34.3 bits (77), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 34/113 (30%), Positives = 47/113 (41%), Gaps = 11/113 (9%)
Query: 387 EDMPQVAPQGVFSRGFNSTAINVTWNP--IELIRENIRGRLIGHRIKYWKEDNPEETAVY 444
E P P V + S +I VTW EL IRG IG+R E++P Y
Sbjct: 12 EAAPDGPPMDVTLQPVTSQSIQVTWKAPKKELQNGVIRGYQIGYR-----ENSPGSNGQY 66
Query: 445 YL--SRTTRNWAL--IVGLQPDTKYYVKVMAYNNAGEGPESERYLERTYRKAP 493
+ + T + + + L+ +Y V V A+N AG GP S T P
Sbjct: 67 SIVEMKATGDSEVYTLDNLKKFAQYGVVVQAFNRAGTGPSSSEINATTLESGP 119
Score = 29.3 bits (64), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 22/88 (25%), Positives = 40/88 (45%), Gaps = 1/88 (1%)
Query: 304 LSISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETLKEYGNVGIA-VVRIPSEFYYTEY 362
+ ++W+ +E QN Y+I +R+ + ++ E G + V + + + +Y
Sbjct: 32 IQVTWKAPKKELQNGVIRGYQIGYRENSPGSNGQYSIVEMKATGDSEVYTLDNLKKFAQY 91
Query: 363 EVKVQAINDVGPGPESEVVTIFSAEDMP 390
V VQA N G GP S + + E P
Sbjct: 92 GVVVQAFNRAGTGPSSSEINATTLESGP 119
>pdb|1UEY|A Chain A, Solution Structure Of The First Fibronectin Type Iii
Domain Of Human Kiaa0343 Protein
Length = 127
Score = 35.8 bits (81), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 30/100 (30%), Positives = 45/100 (45%), Gaps = 12/100 (12%)
Query: 195 SATIQWTDGATNGRPITHYKIIARTNWNS--TWFNVSEHVIGKEVDRYTGRKEASIENVL 252
S + WT G N PIT + I + W + +E +G + + N L
Sbjct: 32 SVQLSWTPGDDNNSPITKFIIEYEDAMHKPGLWHHQTE---------VSGTQTTAQLN-L 81
Query: 253 VPWSTYEFKVIAGNELGYGEPSSPSPQYNTPADKPYQAPS 292
P+ Y F+V+A N +G PS S QY T A +P + P+
Sbjct: 82 SPYVNYSFRVMAVNSIGKSLPSEASEQYLTKASEPDKNPT 121
>pdb|1X5L|A Chain A, Solution Structure Of The Second Fn3 Domain Of Eph
Receptor A8 Protein
Length = 111
Score = 35.8 bits (81), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 41/76 (53%), Gaps = 5/76 (6%)
Query: 508 TTVHVTWRYVSPSFEEEPIIGYKVRVWEVDQDMSRANDTIIPVGNTLDADIVDLSPGKRY 567
T+V + W+ P I+ Y+++ +E D++M ++ T+ V T A + L PG RY
Sbjct: 25 TSVSLLWQ--EPEQPNGIILEYEIKYYEKDKEM-QSYSTLKAV--TTRATVSGLKPGTRY 79
Query: 568 HMRVLAFSNGGDGRMS 583
+V A ++ G GR S
Sbjct: 80 VFQVRARTSAGCGRFS 95
Score = 35.4 bits (80), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 40/74 (54%), Gaps = 6/74 (8%)
Query: 405 TAINVTWNPIELIRENIRGRLIGHRIKYWKEDNPEETAVYYLSRTTRNWALIVGLQPDTK 464
T++++ W E G ++ + IKY+++D ++ + TTR A + GL+P T+
Sbjct: 25 TSVSLLWQEPE----QPNGIILEYEIKYYEKDKEMQSYSTLKAVTTR--ATVSGLKPGTR 78
Query: 465 YYVKVMAYNNAGEG 478
Y +V A +AG G
Sbjct: 79 YVFQVRARTSAGCG 92
>pdb|2EDJ|A Chain A, Solution Structure Of The Fifth Ig-Like Domain From
Human Roundabout Homolog 2
Length = 100
Score = 35.4 bits (80), Expect = 0.086, Method: Composition-based stats.
Identities = 21/63 (33%), Positives = 27/63 (42%), Gaps = 1/63 (1%)
Query: 6 GNVTIFCNPEAAPKPKFVWKKDG-NIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTATN 64
G + C P P W K+G G R I E G L I + D+G Y+C AT+
Sbjct: 24 GTALLKCKATGDPLPVISWLKEGFTFPGRDPRATIQEQGTLQIKNLRISDTGTYTCVATS 83
Query: 65 VHG 67
G
Sbjct: 84 SSG 86
Score = 33.5 bits (75), Expect = 0.40, Method: Composition-based stats.
Identities = 27/91 (29%), Positives = 37/91 (40%), Gaps = 9/91 (9%)
Query: 80 GPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINI 139
GP Q P T+A L+C A + L ++ W G D P I
Sbjct: 7 GPPIILQGPANQTLAVDGTALLKCKATGDPLPVIS--WLKEGFTFPGRD------PRATI 58
Query: 140 -DGGLLEITNASFADAGEYECVVKSTVGKIS 169
+ G L+I N +D G Y CV S+ G+ S
Sbjct: 59 QEQGTLQIKNLRISDTGTYTCVATSSSGETS 89
>pdb|2E3V|A Chain A, Crystal Structure Of The First Fibronectin Type Iii Domain
Of Neural Cell Adhesion Molecule Splicing Isoform From
Human Muscle Culture Lambda-4.4
pdb|2E3V|B Chain B, Crystal Structure Of The First Fibronectin Type Iii Domain
Of Neural Cell Adhesion Molecule Splicing Isoform From
Human Muscle Culture Lambda-4.4
pdb|2E3V|C Chain C, Crystal Structure Of The First Fibronectin Type Iii Domain
Of Neural Cell Adhesion Molecule Splicing Isoform From
Human Muscle Culture Lambda-4.4
Length = 122
Score = 35.4 bits (80), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 30/54 (55%), Gaps = 3/54 (5%)
Query: 456 IVGLQPDTKYYVKVMAYNNAGEGPESERYLERTYRKAPQKPPSAVHIKGINPTT 509
IVGL+P+T Y V++ A N G G E ++ P + PSA ++G P++
Sbjct: 71 IVGLKPETTYAVRLAALNGKGLG---EISAASEFKTQPVREPSAPKLEGSGPSS 121
Score = 33.1 bits (74), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 30/106 (28%), Positives = 46/106 (43%), Gaps = 25/106 (23%)
Query: 192 HKTSATIQWTD-GATNGRPITHYKI----IARTNWNSTWFNVSEHVIGKEVDRYTGRKEA 246
+ ++A +Q+ + AT G PI YK + W+S W++ KEA
Sbjct: 19 YSSTAQVQFDEPEATGGVPILKYKAEWRAVGEEVWHSKWYDA---------------KEA 63
Query: 247 SIENV-----LVPWSTYEFKVIAGNELGYGEPSSPSPQYNTPADKP 287
S E + L P +TY ++ A N G GE S+ S P +P
Sbjct: 64 SXEGIVTIVGLKPETTYAVRLAALNGKGLGEISAASEFKTQPVREP 109
>pdb|1U2H|A Chain A, X-Ray Structure Of The N-Terminally Truncated Human
Apep-1
Length = 99
Score = 35.4 bits (80), Expect = 0.10, Method: Composition-based stats.
Identities = 24/78 (30%), Positives = 36/78 (46%), Gaps = 4/78 (5%)
Query: 4 EGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRR--KIFENG--NLLISPVSRDDSGIYS 59
EG +V + + PKP W ++ + RR + E G L I R D+G Y+
Sbjct: 19 EGQDVIMSIRVQGEPKPVVSWLRNRQPVRPDQRRFAEEAEGGLCRLRILAAERGDAGFYT 78
Query: 60 CTATNVHGMDESKGRLIV 77
C A N +G + + RL V
Sbjct: 79 CKAVNEYGARQCEARLEV 96
>pdb|1RHF|A Chain A, Crystal Structure Of Human Tyro3-D1d2
pdb|1RHF|B Chain B, Crystal Structure Of Human Tyro3-D1d2
Length = 182
Score = 35.4 bits (80), Expect = 0.10, Method: Composition-based stats.
Identities = 29/127 (22%), Positives = 52/127 (40%), Gaps = 6/127 (4%)
Query: 4 EGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFEN-----GNLLISPVSRDDSGIY 58
+G V + C+ E +P W KDG ++ + + I + G L + V R D+G Y
Sbjct: 16 QGQPVKLNCSVEGXEEPDIQWVKDGAVVQNLDQLYIPVSEQHWIGFLSLKSVERSDAGRY 75
Query: 59 SCTATNVHGMDESKGRLIVLHGPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWT 118
C + + S+ + + G ++ P + + + QL C A V +W
Sbjct: 76 WCQVEDGGETEISQPVWLTVEGVPFFTVEPKDLAVPPNAPFQLSCEA-VGPPEPVTIVWW 134
Query: 119 HNGVRIG 125
+IG
Sbjct: 135 RGTTKIG 141
Score = 30.8 bits (68), Expect = 2.5, Method: Composition-based stats.
Identities = 22/76 (28%), Positives = 37/76 (48%), Gaps = 5/76 (6%)
Query: 88 PPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDG-GLLEI 146
P K+T++ + ++L CS E D+ W +G + N+D +L P G L +
Sbjct: 9 PVKLTVSQGQPVKLNCSVEGXEEPDIQ--WVKDGAVVQNLD--QLYIPVSEQHWIGFLSL 64
Query: 147 TNASFADAGEYECVVK 162
+ +DAG Y C V+
Sbjct: 65 KSVERSDAGRYWCQVE 80
>pdb|2DL9|A Chain A, Solution Structure Of The Ig-Like Domain Of Human Leucine-
Rich Repeat-Containing Protein 4
Length = 103
Score = 35.0 bits (79), Expect = 0.11, Method: Composition-based stats.
Identities = 18/47 (38%), Positives = 24/47 (51%)
Query: 36 RRKIFENGNLLISPVSRDDSGIYSCTATNVHGMDESKGRLIVLHGPS 82
R + +G L S V D+G+Y+C TNV G + L V GPS
Sbjct: 55 RISVLNDGTLNFSHVLLSDTGVYTCMVTNVAGNSNASAYLNVSSGPS 101
>pdb|2KDG|A Chain A, Solution Structure Of The 1st Ig Domain Of Myotilin
Length = 100
Score = 35.0 bits (79), Expect = 0.12, Method: Composition-based stats.
Identities = 24/90 (26%), Positives = 42/90 (46%), Gaps = 4/90 (4%)
Query: 80 GPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINI 139
GP + Q+P ++I R ++ DV+ W NG + + DL+++ +
Sbjct: 4 GPPRFIQVPENMSIDEGRFCRMDFKVSGLPAPDVS--WYLNGRTVQSDDLHKMIVSEKGL 61
Query: 140 DGGLLEITNASFADAGEYECVVKSTVGKIS 169
+ E+ AS DAG Y CV K+ G+ +
Sbjct: 62 HSLIFEVVRAS--DAGAYACVAKNRAGEAT 89
>pdb|1L6Z|A Chain A, Crystal Structure Of Murine Ceacam1a[1,4]: A Coronavirus
Receptor And Cell Adhesion Molecule In The Cea Family
Length = 216
Score = 35.0 bits (79), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 34/149 (22%), Positives = 58/149 (38%), Gaps = 11/149 (7%)
Query: 21 KFVWKKDGNIIGSG--GRRKIFENGNLLISPVSRDDSGIYSCTATNVHGMDESKGRLIVL 78
+FV + N G GR I+ NG+LL ++ D G+Y+ T+ + +
Sbjct: 47 RFVPNSNMNFTGQAYSGREIIYSNGSLLFQMITMKDMGVYTLDMTDENYRRTQATVRFHV 106
Query: 79 HGPSYYEQLP-PKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNI 137
H P L T+ ++ L C ++ + W N L E +
Sbjct: 107 HQPVTQPFLQVTNTTVKELDSVTLTCLSND---IGANIQWLFNS-----QSLQLTERMTL 158
Query: 138 NIDGGLLEITNASFADAGEYECVVKSTVG 166
+ + +L I DAGEY+C + + V
Sbjct: 159 SQNNSILRIDPIKREDAGEYQCEISNPVS 187
>pdb|2GEE|A Chain A, Crystal Structure Of Human Type Iii Fibronectin
Extradomain B And Domain 8
Length = 203
Score = 35.0 bits (79), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 41/178 (23%), Positives = 67/178 (37%), Gaps = 34/178 (19%)
Query: 402 FNSTAINVTWNPIELIRENIRGRLIGHRIKYWK--------EDNPEETAVYYLSRTTRNW 453
++I + W P+ +IG+RI ED + + YY
Sbjct: 34 ITDSSIGLRWTPLN------SSTIIGYRITVVAAGEGIPIFEDFVDSSVGYYT------- 80
Query: 454 ALIVGLQPDTKYYVKVMAYNNAGEGPESERYLERTYRKAPQKPPSAVHIKGINPTTVHVT 513
+ GL+P Y + V N GE + ++ PP+ + I P T+ VT
Sbjct: 81 --VTGLEPGIDYDISVYTVKNGGESTPTTLT-----QQTAVPPPTDLRFTNIGPDTMRVT 133
Query: 514 WRYVSPSFEEEPIIGYKVRVWEVDQDMSRANDTIIPVGNTLDADIVDLSPGKRYHMRV 571
W PS + + + VR V + A +I P N + + +L PG Y + V
Sbjct: 134 WA-PPPSID---LTNFLVRYSPVKNEEDVAELSISPSDNAV--VLTNLLPGTEYVVSV 185
>pdb|3R4D|A Chain A, Crystal Structure Of Mouse Coronavirus Receptor-Binding
Domain Complexed With Its Murine Receptor
pdb|3R4D|C Chain C, Crystal Structure Of Mouse Coronavirus Receptor-Binding
Domain Complexed With Its Murine Receptor
Length = 208
Score = 35.0 bits (79), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 34/149 (22%), Positives = 58/149 (38%), Gaps = 11/149 (7%)
Query: 21 KFVWKKDGNIIGSG--GRRKIFENGNLLISPVSRDDSGIYSCTATNVHGMDESKGRLIVL 78
+FV + N G GR I+ NG+LL ++ D G+Y+ T+ + +
Sbjct: 47 RFVPNSNMNFTGQAYSGREIIYSNGSLLFQMITMKDMGVYTLDMTDENYRRTQATVRFHV 106
Query: 79 HGPSYYEQLP-PKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNI 137
H P L T+ ++ L C ++ + W N L E +
Sbjct: 107 HQPVTQPFLQVTNTTVKELDSVTLTCLSND---IGANIQWLFNS-----QSLQLTERMTL 158
Query: 138 NIDGGLLEITNASFADAGEYECVVKSTVG 166
+ + +L I DAGEY+C + + V
Sbjct: 159 SQNNSILRIDPIKREDAGEYQCEISNPVS 187
>pdb|1F97|A Chain A, Soluble Part Of The Junction Adhesion Molecule From Mouse
Length = 212
Score = 35.0 bits (79), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 43/182 (23%), Positives = 67/182 (36%), Gaps = 22/182 (12%)
Query: 4 EGGNVTIFCNPEAAPKPKFVWK-----------KDGNIIGSGGRRKIFENGNLLISPVSR 52
E ++ + C P+ WK + I R F + + S V+R
Sbjct: 15 ENESIKLTCTYSGFSSPRVEWKFVQGSTTALVCYNSQITAPYADRVTFSSSGITFSSVTR 74
Query: 53 DDSGIYSCTATNVHGMD--ESKGRLIVLHGPSYYE-QLPPKITIAAHRNLQLRCSAHTEE 109
D+G Y+C + G + E L VL PS +P +TI L CS H +
Sbjct: 75 KDNGEYTCMVSEEGGQNYGEVSIHLTVLVPPSKPTISVPSSVTIG--NRAVLTCSEH-DG 131
Query: 110 LLDVAYIWTHNGVRIGNMDLNE---LETPNINID--GGLLEITNASFADAGEYECVVKST 164
Y W +G+ + D + + ID G L + D+GEY C ++
Sbjct: 132 SPPSEYSWFKDGISMLTADAKKTRAFMNSSFTIDPKSGDLIFDPVTAFDSGEYYCQAQNG 191
Query: 165 VG 166
G
Sbjct: 192 YG 193
>pdb|3D1M|C Chain C, Crystal Structure Of Sonic Hedgehog Bound To The Third
Fniii Domain Of Cdo
pdb|3D1M|D Chain D, Crystal Structure Of Sonic Hedgehog Bound To The Third
Fniii Domain Of Cdo
pdb|3N1F|C Chain C, Crystal Structure Of Ihhn Bound To Cdofn3
pdb|3N1F|D Chain D, Crystal Structure Of Ihhn Bound To Cdofn3
pdb|3N1Q|C Chain C, Crystal Structure Of Dhhn Bound To Cdofn3
pdb|3N1Q|D Chain D, Crystal Structure Of Dhhn Bound To Cdofn3
pdb|3N1Q|F Chain F, Crystal Structure Of Dhhn Bound To Cdofn3
Length = 102
Score = 34.7 bits (78), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 39/90 (43%), Gaps = 5/90 (5%)
Query: 390 PQVAPQGVFSRGFNSTAINVTWNPIELIREN--IRGRLIGHRIKYWKEDNPEETAVYYLS 447
P P ++ + T I + W I N I+G I +R D+ + V
Sbjct: 4 PITGPHIAYTEAVSDTQIMLKWTYIPSSNNNTPIQGFYIYYRPTDSDNDSDYKRDVV--- 60
Query: 448 RTTRNWALIVGLQPDTKYYVKVMAYNNAGE 477
++ W +I LQP+T Y +K+ +N GE
Sbjct: 61 EGSKQWHMIGHLQPETSYDIKMQCFNEGGE 90
Score = 33.5 bits (75), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 21/97 (21%), Positives = 38/97 (39%)
Query: 492 APQKPPSAVHIKGINPTTVHVTWRYVSPSFEEEPIIGYKVRVWEVDQDMSRANDTIIPVG 551
P P + + ++ T + + W Y+ S PI G+ + D D + G
Sbjct: 3 TPITGPHIAYTEAVSDTQIMLKWTYIPSSNNNTPIQGFYIYYRPTDSDNDSDYKRDVVEG 62
Query: 552 NTLDADIVDLSPGKRYHMRVLAFSNGGDGRMSSPAIT 588
+ I L P Y +++ F+ GG+ S+ I
Sbjct: 63 SKQWHMIGHLQPETSYDIKMQCFNEGGESEFSNVMIC 99
>pdb|2VKW|A Chain A, Human Ncam, Fn3 Domains 1 And 2
pdb|2VKW|B Chain B, Human Ncam, Fn3 Domains 1 And 2
Length = 209
Score = 34.7 bits (78), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 30/106 (28%), Positives = 47/106 (44%), Gaps = 25/106 (23%)
Query: 192 HKTSATIQWTD-GATNGRPITHYKI----IARTNWNSTWFNVSEHVIGKEVDRYTGRKEA 246
+ ++A +Q+ + AT G PI YK + W+S W++ KEA
Sbjct: 20 YSSTAQVQFDEPEATGGVPILKYKAEWRAVGEEVWHSKWYDA---------------KEA 64
Query: 247 SIENV-----LVPWSTYEFKVIAGNELGYGEPSSPSPQYNTPADKP 287
S+E + L P +TY ++ A N G GE S+ S P +P
Sbjct: 65 SMEGIVTIVGLKPETTYAVRLAALNGKGLGEISAASEFKTQPVREP 110
Score = 32.3 bits (72), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 27/49 (55%), Gaps = 3/49 (6%)
Query: 456 IVGLQPDTKYYVKVMAYNNAGEGPESERYLERTYRKAPQKPPSAVHIKG 504
IVGL+P+T Y V++ A N G G E ++ P + PSA ++G
Sbjct: 72 IVGLKPETTYAVRLAALNGKGLG---EISAASEFKTQPVREPSAPKLEG 117
>pdb|2ENS|A Chain A, Solution Structure Of The Third Ig-Like Domain From
Human Advanced Glycosylation End Product-Specific
Receptor
Length = 96
Score = 34.7 bits (78), Expect = 0.15, Method: Composition-based stats.
Identities = 26/78 (33%), Positives = 36/78 (46%), Gaps = 7/78 (8%)
Query: 5 GGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTAT- 63
GG VT+ C A P P+ W KDG + + L++ + D G YSC AT
Sbjct: 25 GGTVTLTCEVPAQPSPQIHWMKDGVPLPLP------PSPVLILPEIGPQDQGTYSCVATH 78
Query: 64 NVHGMDESKGRLIVLHGP 81
+ HG ES+ I + P
Sbjct: 79 SSHGPQESRAVSISIIEP 96
>pdb|2VKX|A Chain A, Human Ncam, Fn3 Domains 1 And 2, M610r Mutant
pdb|2VKX|B Chain B, Human Ncam, Fn3 Domains 1 And 2, M610r Mutant
pdb|2VKX|C Chain C, Human Ncam, Fn3 Domains 1 And 2, M610r Mutant
pdb|2VKX|D Chain D, Human Ncam, Fn3 Domains 1 And 2, M610r Mutant
pdb|2VKX|E Chain E, Human Ncam, Fn3 Domains 1 And 2, M610r Mutant
pdb|2VKX|F Chain F, Human Ncam, Fn3 Domains 1 And 2, M610r Mutant
Length = 209
Score = 34.7 bits (78), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 30/106 (28%), Positives = 47/106 (44%), Gaps = 25/106 (23%)
Query: 192 HKTSATIQWTD-GATNGRPITHYKI----IARTNWNSTWFNVSEHVIGKEVDRYTGRKEA 246
+ ++A +Q+ + AT G PI YK + W+S W++ KEA
Sbjct: 20 YSSTAQVQFDEPEATGGVPILKYKAEWRAVGEEVWHSKWYDA---------------KEA 64
Query: 247 SIENV-----LVPWSTYEFKVIAGNELGYGEPSSPSPQYNTPADKP 287
S+E + L P +TY ++ A N G GE S+ S P +P
Sbjct: 65 SMEGIVTIVGLKPETTYAVRLAALNGKGLGEISAASEFKTQPVREP 110
Score = 32.3 bits (72), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 27/49 (55%), Gaps = 3/49 (6%)
Query: 456 IVGLQPDTKYYVKVMAYNNAGEGPESERYLERTYRKAPQKPPSAVHIKG 504
IVGL+P+T Y V++ A N G G E ++ P + PSA ++G
Sbjct: 72 IVGLKPETTYAVRLAALNGKGLG---EISAASEFKTQPVREPSAPKLEG 117
>pdb|3P4L|A Chain A, Crystal Structure Of A Hemojuvelin-Binding Fragment Of
Neogenin
Length = 211
Score = 34.7 bits (78), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 52/220 (23%), Positives = 76/220 (34%), Gaps = 33/220 (15%)
Query: 284 ADKPYQAPSRXXXXXXXXXDLSISW--EPLPREKQNAPNIYYKIFWRKKNDTEFQSETLK 341
AD P P + I+W LP+ ++ + YY + W+ T + T
Sbjct: 1 ADLPMMPPVGVQASILSHDTIRITWADNSLPKHQKITDSRYYTVRWK----TNIPANTKY 56
Query: 342 EYGNVGIAVVRIPSEFYYTEYEVKVQAINDVGPGPESEVVTIFSAEDMPQVAPQGV--FS 399
+ N + T YE V S + E +P P+ V S
Sbjct: 57 KNANATTLSYLVTGLKPNTLYEFSVMVTKGRRSSTWSMTAHGTTFELVPTSPPKDVTVVS 116
Query: 400 RGFNSTAINVTWNPIELIRENIRGRLIGHRIKYWKEDNPEETAVYYLSRTTRNWAL--IV 457
+ I V W P G++ G+ I Y + N E +W + +V
Sbjct: 117 KEGKPKTIIVNWQP----PSEANGKITGYIIYYSTDVNAE----------IHDWVIEPVV 162
Query: 458 G---------LQPDTKYYVKVMAYNNAGEGPESERYLERT 488
G L DT YY K+ A N+ G GP SE RT
Sbjct: 163 GNRLTHQIQELTLDTPYYFKIQARNSKGMGPMSEAVQFRT 202
>pdb|2WV3|A Chain A, Neuroplastin-55 Binds To And Signals Through The
Fibroblast Growth Factor Receptor
Length = 190
Score = 34.7 bits (78), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 33/73 (45%), Gaps = 9/73 (12%)
Query: 4 EGGNVTIFCNPEAAPKPKFVWKKDGN-----IIGSGGRRKIFENGNL----LISPVSRDD 54
EG + ++C P P+++W+K N I S GR I N +++ +D
Sbjct: 106 EGQDAMMYCKSVGYPHPEWMWRKKENGVFEEISNSSGRFFIINKENYTELNIVNLQITED 165
Query: 55 SGIYSCTATNVHG 67
G Y C ATN G
Sbjct: 166 PGEYECNATNSIG 178
>pdb|2LE9|A Chain A, Ragec2-S100a13 Tetrameric Complex
pdb|2LE9|D Chain D, Ragec2-S100a13 Tetrameric Complex
Length = 93
Score = 34.3 bits (77), Expect = 0.19, Method: Composition-based stats.
Identities = 26/78 (33%), Positives = 36/78 (46%), Gaps = 7/78 (8%)
Query: 5 GGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTAT- 63
GG VT+ C A P P+ W KDG + + L++ + D G YSC AT
Sbjct: 18 GGTVTLTCEVPAQPSPQIHWMKDGVPLPLP------PSPVLILPEIGPQDQGTYSCVATH 71
Query: 64 NVHGMDESKGRLIVLHGP 81
+ HG ES+ I + P
Sbjct: 72 SSHGPQESRAVSISIIEP 89
>pdb|2IBG|A Chain A, Crystal Structure Of Hedgehog Bound To The Fniii Domains
Of Ihog
pdb|2IBG|B Chain B, Crystal Structure Of Hedgehog Bound To The Fniii Domains
Of Ihog
pdb|2IBG|C Chain C, Crystal Structure Of Hedgehog Bound To The Fniii Domains
Of Ihog
pdb|2IBG|D Chain D, Crystal Structure Of Hedgehog Bound To The Fniii Domains
Of Ihog
Length = 214
Score = 34.3 bits (77), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 25/106 (23%), Positives = 48/106 (45%), Gaps = 12/106 (11%)
Query: 496 PPSAVHIKGINPTTVHVTWRYVSPSFEEEPIIGYKVRVWEV--DQDMSRANDTI------ 547
PP+ ++ ++ +V + W + P + PI+ +KV+ V ++ ND I
Sbjct: 4 PPTPPNVTRLSDESVMLRW--MVPRNDGLPIVIFKVQYRMVGKRKNWQTTNDNIPYGKPK 61
Query: 548 --IPVGNTLDADIVDLSPGKRYHMRVLAFSNGGDGRMSSPAITFQM 591
+G + A + DL P Y R+LA + D + S+ + F +
Sbjct: 62 WNSELGKSFTASVTDLKPQHTYRFRILAVYSNNDNKESNTSAKFYL 107
>pdb|2IBB|A Chain A, Crystal Structure Of The First And Second Fniii Domains Of
Ihog
Length = 213
Score = 34.3 bits (77), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 25/106 (23%), Positives = 48/106 (45%), Gaps = 12/106 (11%)
Query: 496 PPSAVHIKGINPTTVHVTWRYVSPSFEEEPIIGYKVRVWEV--DQDMSRANDTI------ 547
PP+ ++ ++ +V + W + P + PI+ +KV+ V ++ ND I
Sbjct: 4 PPTPPNVTRLSDESVMLRW--MVPRNDGLPIVIFKVQYRMVGKRKNWQTTNDNIPYGKPK 61
Query: 548 --IPVGNTLDADIVDLSPGKRYHMRVLAFSNGGDGRMSSPAITFQM 591
+G + A + DL P Y R+LA + D + S+ + F +
Sbjct: 62 WNSELGKSFTASVTDLKPQHTYRFRILAVYSNNDNKESNTSAKFYL 107
>pdb|2EDE|A Chain A, Solution Structure Of The Sixth Fibronectin Type Iii
Domain Of Human Netrin Receptor Dcc
Length = 114
Score = 33.9 bits (76), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 29/104 (27%), Positives = 46/104 (44%), Gaps = 7/104 (6%)
Query: 390 PQVAPQG--VFSRGFNSTAINVTWNPIELIRENIRGRLIGHRIKYWKEDN-PEETAVYYL 446
P AP+ V +R A+ V+W P G++ + + Y + N P + +
Sbjct: 8 PTSAPKDLTVITREGKPRAVIVSWQP----PLEANGKITAYILFYTLDKNIPIDDWIMET 63
Query: 447 SRTTRNWALIVGLQPDTKYYVKVMAYNNAGEGPESERYLERTYR 490
R I+ L DT YY ++ A N+ G GP S+ L RT +
Sbjct: 64 ISGDRLTHQIMDLNLDTMYYFRIQARNSKGVGPLSDPILFRTLK 107
>pdb|2IC2|A Chain A, Crystal Structure Of The First Fniii Domain Of Ihog
pdb|2IC2|B Chain B, Crystal Structure Of The First Fniii Domain Of Ihog
Length = 115
Score = 33.9 bits (76), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 25/106 (23%), Positives = 47/106 (44%), Gaps = 12/106 (11%)
Query: 496 PPSAVHIKGINPTTVHVTWRYVSPSFEEEPIIGYKVRVWEVDQ--DMSRANDTI------ 547
PP+ ++ ++ +V + W P + PI+ +KV+ V + + ND I
Sbjct: 5 PPTPPNVTRLSDESVXLRWXV--PRNDGLPIVIFKVQYRXVGKRKNWQTTNDNIPYGKPK 62
Query: 548 --IPVGNTLDADIVDLSPGKRYHMRVLAFSNGGDGRMSSPAITFQM 591
+G + A + DL P Y R+LA + D + S+ + F +
Sbjct: 63 WNSELGKSFTASVTDLKPQHTYRFRILAVYSNNDNKESNTSAKFYL 108
>pdb|2E7H|A Chain A, Solution Structure Of The Second Fn3 Domain From Human
Ephrin Type-B Receptor 4
Length = 109
Score = 33.5 bits (75), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 37/66 (56%), Gaps = 1/66 (1%)
Query: 423 GRLIGHRIKYWKEDNPEETAVYYLSRTTRNWALIVGLQPDTKYYVKVMAYNNAGEGPESE 482
G ++ + +KY ++ ++V +L +T+ N A + GL+ Y V+V A + AG GP +
Sbjct: 36 GAVLDYEVKYHEKGAEGPSSVRFL-KTSENRAELRGLKRGASYLVQVRARSEAGYGPFGQ 94
Query: 483 RYLERT 488
+ +T
Sbjct: 95 EHHSQT 100
>pdb|3NCM|A Chain A, Neural Cell Adhesion Molecule, Module 2, Nmr, 20
Structures
Length = 92
Score = 33.5 bits (75), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 26/59 (44%), Gaps = 2/59 (3%)
Query: 4 EGGNVTIFCNPEAAPKPKFVWKKDGN--IIGSGGRRKIFENGNLLISPVSRDDSGIYSC 60
EG + I C+ ++ P +WK G I+ R + N L I + + D G Y C
Sbjct: 15 EGEDAVIVCDVVSSLPPTIIWKHKGRDVILKKDVRFIVLSNNYLQIRGIKKTDEGTYRC 73
>pdb|2X10|A Chain A, Crystal Structure Of The Complete Epha2 Ectodomain
Length = 545
Score = 33.1 bits (74), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 44/92 (47%), Gaps = 7/92 (7%)
Query: 391 QVAPQGVFSRGFNSTAINVTWNPIELIRENIRGRLIGHRIKYWKEDNPEETAVYYLSRTT 450
Q P V G ++T+++V+W+ I + R+ + + Y K+ + + Y + RT
Sbjct: 438 QTEPPKVRLEGRSTTSLSVSWS----IPPPQQSRVWKYEVTYRKKGD---SNSYNVRRTE 490
Query: 451 RNWALIVGLQPDTKYYVKVMAYNNAGEGPESE 482
+ L PDT Y V+V A G+G S+
Sbjct: 491 GFSVTLDDLAPDTTYLVQVQALTQEGQGAGSK 522
>pdb|2V9T|A Chain A, Complex Between The Second Lrr Domain Of Slit2 And The
First Ig Domain From Robo1
Length = 117
Score = 33.1 bits (74), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 30/74 (40%), Gaps = 10/74 (13%)
Query: 4 EGGNVTIFCNPEAAPKPKFVWKKDGNIIGSG-----GRRKIFENGNLLISPV-----SRD 53
+G T+ C E P P W K G + + R + +G+L + SR
Sbjct: 23 KGEPATLNCKAEGRPTPTIEWYKGGERVETDKDDPRSHRMLLPSGSLFFLRIVHGRKSRP 82
Query: 54 DSGIYSCTATNVHG 67
D G+Y C A N G
Sbjct: 83 DEGVYVCVARNYLG 96
>pdb|3FL7|A Chain A, Crystal Structure Of The Human Ephrin A2 Ectodomain
Length = 536
Score = 33.1 bits (74), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 44/92 (47%), Gaps = 7/92 (7%)
Query: 391 QVAPQGVFSRGFNSTAINVTWNPIELIRENIRGRLIGHRIKYWKEDNPEETAVYYLSRTT 450
Q P V G ++T+++V+W+ I + R+ + + Y K+ + + Y + RT
Sbjct: 441 QTEPPKVRLEGRSTTSLSVSWS----IPPPQQSRVWKYEVTYRKKGD---SNSYNVRRTE 493
Query: 451 RNWALIVGLQPDTKYYVKVMAYNNAGEGPESE 482
+ L PDT Y V+V A G+G S+
Sbjct: 494 GFSVTLDDLAPDTTYLVQVQALTQEGQGAGSK 525
>pdb|2X11|A Chain A, Crystal Structure Of The Complete Epha2 Ectodomain In
Complex With Ephrin A5 Receptor Binding Domain
Length = 545
Score = 33.1 bits (74), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 44/92 (47%), Gaps = 7/92 (7%)
Query: 391 QVAPQGVFSRGFNSTAINVTWNPIELIRENIRGRLIGHRIKYWKEDNPEETAVYYLSRTT 450
Q P V G ++T+++V+W+ I + R+ + + Y K+ + + Y + RT
Sbjct: 438 QTEPPKVRLEGRSTTSLSVSWS----IPPPQQSRVWKYEVTYRKKGD---SNSYNVRRTE 490
Query: 451 RNWALIVGLQPDTKYYVKVMAYNNAGEGPESE 482
+ L PDT Y V+V A G+G S+
Sbjct: 491 GFSVTLDDLAPDTTYLVQVQALTQEGQGAGSK 522
>pdb|1EPF|A Chain A, Crystal Structure Of The Two N-Terminal Immunoglobulin
Domains Of The Neural Cell Adhesion Molecule (Ncam)
pdb|1EPF|B Chain B, Crystal Structure Of The Two N-Terminal Immunoglobulin
Domains Of The Neural Cell Adhesion Molecule (Ncam)
pdb|1EPF|C Chain C, Crystal Structure Of The Two N-Terminal Immunoglobulin
Domains Of The Neural Cell Adhesion Molecule (Ncam)
pdb|1EPF|D Chain D, Crystal Structure Of The Two N-Terminal Immunoglobulin
Domains Of The Neural Cell Adhesion Molecule (Ncam)
Length = 191
Score = 32.7 bits (73), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 26/59 (44%), Gaps = 2/59 (3%)
Query: 4 EGGNVTIFCNPEAAPKPKFVWKKDGN--IIGSGGRRKIFENGNLLISPVSRDDSGIYSC 60
EG + I C+ ++ P +WK G I+ R + N L I + + D G Y C
Sbjct: 114 EGEDAVIVCDVVSSLPPTIIWKHKGRDVILKKDVRFIVLSNNYLQIRGIKKTDEGTYRC 172
>pdb|2WP3|O Chain O, Crystal Structure Of The Titin M10-Obscurin Like 1 Ig
Complex
pdb|2WWM|C Chain C, Crystal Structure Of The Titin M10-Obscurin Like 1 Ig
Complex In Space Group P1
pdb|2WWM|O Chain O, Crystal Structure Of The Titin M10-Obscurin Like 1 Ig
Complex In Space Group P1
Length = 109
Score = 32.7 bits (73), Expect = 0.62, Method: Composition-based stats.
Identities = 22/81 (27%), Positives = 34/81 (41%), Gaps = 3/81 (3%)
Query: 5 GGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENG---NLLISPVSRDDSGIYSCT 61
G + C P P VW+K G + + R +G LL++ D+G+Y C
Sbjct: 29 GAEAELKCVVLGEPPPVVVWEKGGQQLAASERLSFPADGAEHGLLLTAALPTDAGVYVCR 88
Query: 62 ATNVHGMDESKGRLIVLHGPS 82
A N G + + VL P+
Sbjct: 89 ARNAAGEAYAAAAVTVLEPPA 109
>pdb|2WWK|O Chain O, Crystal Structure Of The Titin M10-Obscurin Like 1 Ig F17r
Mutant Complex
Length = 109
Score = 32.7 bits (73), Expect = 0.64, Method: Composition-based stats.
Identities = 22/81 (27%), Positives = 34/81 (41%), Gaps = 3/81 (3%)
Query: 5 GGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENG---NLLISPVSRDDSGIYSCT 61
G + C P P VW+K G + + R +G LL++ D+G+Y C
Sbjct: 29 GAEAELKCVVLGEPPPVVVWEKGGQQLAASERLSFPADGAEHGLLLTAALPTDAGVYVCR 88
Query: 62 ATNVHGMDESKGRLIVLHGPS 82
A N G + + VL P+
Sbjct: 89 ARNAAGEAYAAAAVTVLEPPA 109
>pdb|1MFN|A Chain A, Solution Nmr Structure Of Linked Cell Attachment Modules
Of Mouse Fibronectin Containing The Rgd And Synergy
Regions, 20 Structures
pdb|2MFN|A Chain A, Solution Nmr Structure Of Linked Cell Attachment Modules
Of Mouse Fibronectin Containing The Rgd And Synergy
Regions, 10 Structures
Length = 184
Score = 32.7 bits (73), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 45/201 (22%), Positives = 79/201 (39%), Gaps = 28/201 (13%)
Query: 393 APQGVFSRGFNSTAINVTWNPIELIRENIRGRLIGHRIKYWKEDNPEETAVYYLSRTTRN 452
+P G S + + V W R I G +I H ++ P + V +RN
Sbjct: 4 SPTGFDSSDITANSFTVHW---VAPRAPITGYIIRHHAEH-SVGRPRQDRV----PPSRN 55
Query: 453 WALIVGLQPDTKYYVKVMAYNNAGEGPESERYLERTYRKAPQKPPSAVHIKGINPTTVHV 512
+ L P T+Y V ++A N E P + T P+ + + PT++ +
Sbjct: 56 SITLTNLNPGTEYVVSIIAVNGREESPPLIGQ-QATVSDIPRD----LEVIASTPTSLLI 110
Query: 513 TWRYVSPSFEEEPIIGYKVRVWEVDQDMSRANDTI----IPVGNTLDADIVDLSPGKRYH 568
+W E P + VR + + + N + +P G+ A I ++ PG Y
Sbjct: 111 SW--------EPPAV--SVRYYRITYGETGGNSPVQEFTVP-GSKSTATINNIKPGADYT 159
Query: 569 MRVLAFSNGGDGRMSSPAITF 589
+ + A + GD SS ++
Sbjct: 160 ITLYAVTGRGDSPASSKPVSI 180
>pdb|2HAZ|A Chain A, Crystal Structure Of The First Fibronectin Domain Of Human
Ncam1
Length = 105
Score = 32.3 bits (72), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 44/96 (45%), Gaps = 25/96 (26%)
Query: 192 HKTSATIQWTD-GATNGRPITHYKI----IARTNWNSTWFNVSEHVIGKEVDRYTGRKEA 246
+ ++A +Q+ + AT G PI YK + W+S W++ KEA
Sbjct: 18 YSSTAQVQFDEPEATGGVPILKYKAEWRAVGEEVWHSKWYDA---------------KEA 62
Query: 247 SIENV-----LVPWSTYEFKVIAGNELGYGEPSSPS 277
S+E + L P +TY ++ A N G GE S+ S
Sbjct: 63 SMEGIVTIVGLKPETTYAVRLAALNGKGLGEISAAS 98
>pdb|3MJ6|A Chain A, Crystal Structure Of The Gammadelta T Cell Costimulatory
Receptor Junctional Adhesion Molecule-Like Protein, Jaml
pdb|3MJ7|A Chain A, Crystal Structure Of The Complex Of Jaml And Coxsackie And
Adenovirus Receptor, Car
pdb|3MJ9|A Chain A, Crystal Structure Of Jaml In Complex With The Stimulatory
Antibody Hl4e10
Length = 268
Score = 32.3 bits (72), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 38/160 (23%), Positives = 69/160 (43%), Gaps = 40/160 (25%)
Query: 42 NGNLLISPVSRDDSGIYSCTATNVHGMDESKGRLIVLHGPSYYEQLPPK---ITIAAHRN 98
+G+LL+ V + D GIY+C + +ES +V+ P LP + + +
Sbjct: 83 DGSLLLQDVQKADEGIYTC---EIRLKNES----MVMKKPVELWVLPEEPRDLRVRVGDT 135
Query: 99 LQLRCS-------------------AHTEELLDVAYIWTHNGVRIGNMD-----LNELE- 133
Q+RCS +HTEE ++Y + +R G N ++
Sbjct: 136 TQMRCSIQSTEEKRVTKVNWMFSSGSHTEEETVLSY---DSNMRSGKFQSLGRFRNRVDL 192
Query: 134 TPNINIDGGLLEITNASFADAGEYECVVKSTVGKISTKTT 173
T +I+ + G +++ +D G Y C + VGK+ ++ T
Sbjct: 193 TGDISRNDGSIKLQTVKESDQGIYTCSI--YVGKLESRKT 230
>pdb|3KNB|B Chain B, Crystal Structure Of The Titin C-Terminus In Complex With
Obscurin- Like 1
Length = 107
Score = 32.0 bits (71), Expect = 1.0, Method: Composition-based stats.
Identities = 22/80 (27%), Positives = 33/80 (41%), Gaps = 3/80 (3%)
Query: 5 GGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENG---NLLISPVSRDDSGIYSCT 61
G + C P P VW+K G + + R +G LL++ D+G+Y C
Sbjct: 28 GAEAELKCVVLGEPPPVVVWEKGGQQLAASERLSFPADGAEHGLLLTAALPTDAGVYVCR 87
Query: 62 ATNVHGMDESKGRLIVLHGP 81
A N G + + VL P
Sbjct: 88 ARNAAGEAYAAAAVTVLEPP 107
>pdb|2X1L|A Chain A, Crystal Structure Of Mycobacterium Smegmatis
Methionyl-Trna Synthetase In Complex With Methionine And
Adenosine
pdb|2X1L|B Chain B, Crystal Structure Of Mycobacterium Smegmatis
Methionyl-Trna Synthetase In Complex With Methionine And
Adenosine
pdb|2X1L|C Chain C, Crystal Structure Of Mycobacterium Smegmatis
Methionyl-Trna Synthetase In Complex With Methionine And
Adenosine
pdb|2X1M|A Chain A, Crystal Structure Of Mycobacterium Smegmatis
Methionyl-Trna Synthetase In Complex With Methionine
Length = 524
Score = 32.0 bits (71), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 40/150 (26%), Positives = 62/150 (41%), Gaps = 20/150 (13%)
Query: 446 LSRTTRNWALIVGLQPDTKYYVKVMAYNNAGEG---PESERYLERTYRKAPQKPPSAVHI 502
+SRTT +W + V PD YV V A N G P++E R Y P+ +H+
Sbjct: 217 ISRTTFDWGVPVPDHPDHVMYVWVDALTNYLTGVGFPDTESESFRRYW------PADLHM 270
Query: 503 KGINPTTVH-VTWRYVSPSFEEEPIIGYKVRVWEVDQDMSRANDTIIPVGNTLD----AD 557
G + H V W P+F + R++ ++R +GN +D D
Sbjct: 271 IGKDIIRFHTVYW----PAFLMSAGLPLPKRIFAHGWLLNRGEKMSKSIGNVVDPVNLVD 326
Query: 558 IVDLSPGKRYHMRVLAFSNGGDGRMSSPAI 587
L + + +R + F G DG + AI
Sbjct: 327 TFGLDQVRYFLLREVPF--GQDGSYNEDAI 354
>pdb|3NCC|B Chain B, A Human Prolactin Receptor Antagonist In Complex With The
Mutant Extracellular Domain H188a Of The Human Prolactin
Receptor
pdb|3NCE|B Chain B, A Mutant Human Prolactin Receptor Antagonist H27a In
Complex With The Mutant Extracellular Domain H188a Of
The Human Prolactin Receptor
pdb|3NCF|B Chain B, A Mutant Human Prolactin Receptor Antagonist H30a In
Complex With The Mutant Extracellular Domain H188a Of
The Human Prolactin Receptor
Length = 210
Score = 32.0 bits (71), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 33/129 (25%), Positives = 54/129 (41%), Gaps = 3/129 (2%)
Query: 465 YYVKVMAYNNAGEGPESERYLERTYRKAPQKPPS-AVHIKGINPTTVHVTWRYVSPSFEE 523
Y + V A N G E Y++ TY P P AV +K ++ W SP
Sbjct: 75 YIMMVNATNQMGSSFSDELYVDVTYIVQPDPPLELAVEVKQPEDRKPYL-WIKWSPPTLI 133
Query: 524 EPIIGYKVRVWEVDQDMSRAND-TIIPVGNTLDADIVDLSPGKRYHMRVLAFSNGGDGRM 582
+ G+ ++E+ +A + I G + I+ L PG++Y ++V + G
Sbjct: 134 DLKTGWFTLLYEIRLKPEKAAEWEIHFAGQQTEFKILSLHPGQKYLVQVRCKPDAGYWSA 193
Query: 583 SSPAITFQM 591
SPA Q+
Sbjct: 194 WSPATFIQI 202
>pdb|2WP3|T Chain T, Crystal Structure Of The Titin M10-Obscurin Like 1 Ig
Complex
pdb|2WWK|T Chain T, Crystal Structure Of The Titin M10-Obscurin Like 1 Ig
F17r Mutant Complex
pdb|2WWM|D Chain D, Crystal Structure Of The Titin M10-Obscurin Like 1 Ig
Complex In Space Group P1
pdb|2WWM|T Chain T, Crystal Structure Of The Titin M10-Obscurin Like 1 Ig
Complex In Space Group P1
pdb|2Y9R|T Chain T, Crystal Structure Of The M10 Domain Of Titin
Length = 102
Score = 31.6 bits (70), Expect = 1.4, Method: Composition-based stats.
Identities = 24/74 (32%), Positives = 34/74 (45%), Gaps = 7/74 (9%)
Query: 4 EGGNVTIFCNPEAAPKPKFVWKKDGNIIGSG--GRRKIFENGN----LLISPVSRDDSGI 57
EG +T+ C P P+ W G I S GR I EN + L+I V + D G+
Sbjct: 21 EGKVLTVACAFTGEPTPEVTWSCGGRKIHSQEQGRFHI-ENTDDLTTLIIMDVQKQDGGL 79
Query: 58 YSCTATNVHGMDES 71
Y+ + N G D +
Sbjct: 80 YTLSLGNEFGSDSA 93
>pdb|1T6W|A Chain A, Rational Design Of A Calcium-Binding Adhesion Protein
Nmr, 20 Structures
Length = 99
Score = 31.6 bits (70), Expect = 1.5, Method: Composition-based stats.
Identities = 14/33 (42%), Positives = 21/33 (63%)
Query: 35 GRRKIFENGNLLISPVSRDDSGIYSCTATNVHG 67
G +I NG+L I ++RDDSG Y+ T + +G
Sbjct: 53 GAFEILANGDLKIKNLTRDDSGTYNVTVYSTNG 85
>pdb|1CDC|A Chain A, Cd2, N-Terminal Domain (1-99), Truncated Form
pdb|1CDC|B Chain B, Cd2, N-Terminal Domain (1-99), Truncated Form
Length = 99
Score = 31.6 bits (70), Expect = 1.5, Method: Composition-based stats.
Identities = 14/33 (42%), Positives = 21/33 (63%)
Query: 35 GRRKIFENGNLLISPVSRDDSGIYSCTATNVHG 67
G +I NG+L I ++RDDSG Y+ T + +G
Sbjct: 53 GAFEILANGDLKIKNLTRDDSGTYNVTVYSTNG 85
>pdb|3ZYI|A Chain A, Netring2 In Complex With Ngl2
Length = 452
Score = 31.6 bits (70), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 25/54 (46%), Gaps = 3/54 (5%)
Query: 27 DGNIIGSGGRR---KIFENGNLLISPVSRDDSGIYSCTATNVHGMDESKGRLIV 77
+G ++ R + +G L S V D+G+Y+C TNV G + L V
Sbjct: 388 NGTVLSHASRHPRISVLNDGTLNFSHVLLSDTGVYTCMVTNVAGNSNASAYLNV 441
>pdb|1A6P|A Chain A, Engineering Of A Misfolded Form Of Cd2
pdb|1A6P|B Chain B, Engineering Of A Misfolded Form Of Cd2
Length = 94
Score = 31.6 bits (70), Expect = 1.6, Method: Composition-based stats.
Identities = 14/33 (42%), Positives = 21/33 (63%)
Query: 35 GRRKIFENGNLLISPVSRDDSGIYSCTATNVHG 67
G +I NG+L I ++RDDSG Y+ T + +G
Sbjct: 48 GAFEILANGDLKIKNLTRDDSGTYNVTVYSTNG 80
>pdb|1A64|A Chain A, Engineering A Misfolded Form Of Rat Cd2
pdb|1A64|B Chain B, Engineering A Misfolded Form Of Rat Cd2
pdb|1A7B|A Chain A, Engineering A Misfolded Form Of Cd2
pdb|1A7B|B Chain B, Engineering A Misfolded Form Of Cd2
pdb|1A7B|C Chain C, Engineering A Misfolded Form Of Cd2
pdb|1A7B|D Chain D, Engineering A Misfolded Form Of Cd2
Length = 97
Score = 31.2 bits (69), Expect = 1.6, Method: Composition-based stats.
Identities = 14/33 (42%), Positives = 21/33 (63%)
Query: 35 GRRKIFENGNLLISPVSRDDSGIYSCTATNVHG 67
G +I NG+L I ++RDDSG Y+ T + +G
Sbjct: 51 GAFEILANGDLKIKNLTRDDSGTYNVTVYSTNG 83
>pdb|1BP3|B Chain B, The Xray Structure Of A Growth Hormone-Prolactin Receptor
Complex
Length = 211
Score = 31.2 bits (69), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 33/129 (25%), Positives = 54/129 (41%), Gaps = 3/129 (2%)
Query: 465 YYVKVMAYNNAGEGPESERYLERTYRKAPQKPPS-AVHIKGINPTTVHVTWRYVSPSFEE 523
Y + V A N G E Y++ TY P P AV +K ++ W SP
Sbjct: 75 YIMMVNATNQMGSSFSDELYVDVTYIVQPDPPLELAVEVKQPEDRKPYL-WIKWSPPTLI 133
Query: 524 EPIIGYKVRVWEVDQDMSRAND-TIIPVGNTLDADIVDLSPGKRYHMRVLAFSNGGDGRM 582
+ G+ ++E+ +A + I G + I+ L PG++Y ++V + G
Sbjct: 134 DLKTGWFTLLYEIRLKPEKAAEWEIHFAGQQTEFKILSLHPGQKYLVQVRCKPDHGYWSA 193
Query: 583 SSPAITFQM 591
SPA Q+
Sbjct: 194 WSPATFIQI 202
>pdb|3D48|R Chain R, Crystal Structure Of A Prolactin Receptor Antagonist Bound
To The Extracellular Domain Of The Prolactin Receptor
Length = 211
Score = 31.2 bits (69), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 33/129 (25%), Positives = 54/129 (41%), Gaps = 3/129 (2%)
Query: 465 YYVKVMAYNNAGEGPESERYLERTYRKAPQKPPS-AVHIKGINPTTVHVTWRYVSPSFEE 523
Y + V A N G E Y++ TY P P AV +K ++ W SP
Sbjct: 76 YIMMVNATNQMGSSFSDELYVDVTYIVQPDPPLELAVEVKQPEDRKPYL-WIKWSPPTLI 134
Query: 524 EPIIGYKVRVWEVDQDMSRAND-TIIPVGNTLDADIVDLSPGKRYHMRVLAFSNGGDGRM 582
+ G+ ++E+ +A + I G + I+ L PG++Y ++V + G
Sbjct: 135 DLKTGWFTLLYEIRLKPEKAAEWEIHFAGQQTEFKILSLHPGQKYLVQVRCKPDHGYWSA 194
Query: 583 SSPAITFQM 591
SPA Q+
Sbjct: 195 WSPATFIQI 203
>pdb|3MZG|B Chain B, Crystal Structure Of A Human Prolactin Receptor Antagonist
In Complex With The Extracellular Domain Of The Human
Prolactin Receptor
pdb|3N06|B Chain B, A Mutant Human Prolactin Receptor Antagonist H27a In
Complex With The Extracellular Domain Of The Human
Prolactin Receptor
pdb|3N0P|B Chain B, A Mutant Human Prolactin Receptor Antagonist H30a In
Complex With The Extracellular Domain Of The Human
Prolactin Receptor
pdb|3NCB|B Chain B, A Mutant Human Prolactin Receptor Antagonist H180a In
Complex With The Extracellular Domain Of The Human
Prolactin Receptor
Length = 210
Score = 31.2 bits (69), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 33/129 (25%), Positives = 54/129 (41%), Gaps = 3/129 (2%)
Query: 465 YYVKVMAYNNAGEGPESERYLERTYRKAPQKPPS-AVHIKGINPTTVHVTWRYVSPSFEE 523
Y + V A N G E Y++ TY P P AV +K ++ W SP
Sbjct: 75 YIMMVNATNQMGSSFSDELYVDVTYIVQPDPPLELAVEVKQPEDRKPYL-WIKWSPPTLI 133
Query: 524 EPIIGYKVRVWEVDQDMSRAND-TIIPVGNTLDADIVDLSPGKRYHMRVLAFSNGGDGRM 582
+ G+ ++E+ +A + I G + I+ L PG++Y ++V + G
Sbjct: 134 DLKTGWFTLLYEIRLKPEKAAEWEIHFAGQQTEFKILSLHPGQKYLVQVRCKPDHGYWSA 193
Query: 583 SSPAITFQM 591
SPA Q+
Sbjct: 194 WSPATFIQI 202
>pdb|1X5K|A Chain A, The Solution Structure Of The Sixth Fibronectin Type Iii
Domain Of Human Neogenin
Length = 124
Score = 31.2 bits (69), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 30/107 (28%), Positives = 42/107 (39%), Gaps = 25/107 (23%)
Query: 397 VFSRGFNSTAINVTWNPIELIRENIRGRLIGHRIKYWKEDNPEETAVYYLSRTTRNWAL- 455
V S+ I V W P G++ G+ I Y + N E +W +
Sbjct: 27 VVSKEGKPKTIIVNWQP----PSEANGKITGYIIYYSTDVNAE----------IHDWVIE 72
Query: 456 -IVG---------LQPDTKYYVKVMAYNNAGEGPESERYLERTYRKA 492
+VG L DT YY K+ A N+ G GP SE RT + +
Sbjct: 73 PVVGNRLTHQIQELTLDTPYYFKIQARNSKGMGPMSEAVQFRTPKAS 119
>pdb|1X5F|A Chain A, The Solution Structure Of The First Fibronectin Type Iii
Domain Of Human Neogenin
Length = 120
Score = 31.2 bits (69), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 26/41 (63%), Gaps = 1/41 (2%)
Query: 236 EVDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSP 276
E + G + +I+N L+P + Y F+V+A N+ G GE S+P
Sbjct: 67 ENTSHPGEMQVTIQN-LMPATVYIFRVMAQNKHGSGESSAP 106
>pdb|3KNB|A Chain A, Crystal Structure Of The Titin C-Terminus In Complex
With Obscurin- Like 1
pdb|3Q5O|A Chain A, Crystal Structure Of Human Titin Domain M10
pdb|3Q5O|B Chain B, Crystal Structure Of Human Titin Domain M10
Length = 100
Score = 31.2 bits (69), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 34/74 (45%), Gaps = 7/74 (9%)
Query: 4 EGGNVTIFCNPEAAPKPKFVWKKDGNIIGSG--GRRKIFENGN----LLISPVSRDDSGI 57
EG +T+ C P P+ W G I S GR I EN + L+I V + D G+
Sbjct: 19 EGKVLTVACAFTGEPTPEVTWSCGGRKIHSQEQGRFHI-ENTDDLTTLIIMDVQKQDGGL 77
Query: 58 YSCTATNVHGMDES 71
Y+ + N G D +
Sbjct: 78 YTLSLGNEFGSDSA 91
>pdb|1HNG|A Chain A, Crystal Structure At 2.8 Angstroms Resolution Of A
Soluble Form Of The Cell Adhesion Molecule Cd2
pdb|1HNG|B Chain B, Crystal Structure At 2.8 Angstroms Resolution Of A
Soluble Form Of The Cell Adhesion Molecule Cd2
Length = 176
Score = 31.2 bits (69), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 21/33 (63%)
Query: 35 GRRKIFENGNLLISPVSRDDSGIYSCTATNVHG 67
G +I NG+L I ++RDDSG Y+ T + +G
Sbjct: 53 GAFEILANGDLKIKNLTRDDSGTYNVTVYSTNG 85
>pdb|4HWU|A Chain A, Crystal Structure Of The Ig-C2 Type 1 Domain From Mouse
Fibroblast Growth Factor Receptor 2 (Fgfr2)
[nysgrc-005912]
pdb|4HWU|B Chain B, Crystal Structure Of The Ig-C2 Type 1 Domain From Mouse
Fibroblast Growth Factor Receptor 2 (Fgfr2)
[nysgrc-005912]
Length = 95
Score = 31.2 bits (69), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 36/81 (44%), Gaps = 17/81 (20%)
Query: 88 PPKITIAAHRNLQLRCSAHTEELLDVAYI-WTHNGVRIGNMDLNELETPN--INIDGGLL 144
P +A +L+L+C L D A I WT +GV +G PN + G L
Sbjct: 8 PEAYVVAPGESLELQCM-----LKDAAVISWTKDGVHLG---------PNNRTVLIGEYL 53
Query: 145 EITNASFADAGEYECVVKSTV 165
+I A+ D+G Y C TV
Sbjct: 54 QIKGATPRDSGLYACTAARTV 74
>pdb|3RBS|A Chain A, Crystal Structure Of The Myomesin Domains 10 And 11
Length = 207
Score = 31.2 bits (69), Expect = 1.9, Method: Composition-based stats.
Identities = 20/56 (35%), Positives = 31/56 (55%), Gaps = 3/56 (5%)
Query: 23 VWKKDGNIIGSGGRRKIFENG--NLLISPVSRDDSGIYSCTATNVHGMDESKGRLI 76
VW KD I S + F++G LLI+ S+ D+GIY + G D+S+ +L+
Sbjct: 150 VWYKDEREI-SVDEKHDFKDGICTLLITEFSKKDAGIYEVILKDDRGKDKSRLKLV 204
>pdb|2CR3|A Chain A, Solution Structure Of The First Ig-Like Domain Of Human
Fibroblast Growth Factor Receptor 1
Length = 99
Score = 30.8 bits (68), Expect = 2.1, Method: Composition-based stats.
Identities = 24/73 (32%), Positives = 34/73 (46%), Gaps = 12/73 (16%)
Query: 99 LQLRCSAHTEELLDVAYI-WTHNGVRIGNMDLNELETPNINIDGGLLEITNASFADAGEY 157
LQLRC DV I W +GV++ E+ I G +E+ ++ AD+G Y
Sbjct: 21 LQLRCRLRD----DVQSINWLRDGVQLA-------ESNRTRITGEEVEVQDSVPADSGLY 69
Query: 158 ECVVKSTVGKIST 170
CV S G +T
Sbjct: 70 ACVTSSPSGSDTT 82
>pdb|2C5D|C Chain C, Structure Of A Minimal Gas6-Axl Complex
pdb|2C5D|D Chain D, Structure Of A Minimal Gas6-Axl Complex
Length = 195
Score = 30.8 bits (68), Expect = 2.3, Method: Composition-based stats.
Identities = 38/164 (23%), Positives = 62/164 (37%), Gaps = 28/164 (17%)
Query: 1 YAGEGGNVT--------IFCNPEAAPKPKFV-WKKDGNII------------GSGGRRKI 39
+ G GN+T + C + +P V W +DG I+ G +
Sbjct: 5 FVGNPGNITGARGLTGTLRCQLQVQGEPPEVHWLRDGQILELADSTQTQVPLGEDEQDDW 64
Query: 40 FENGNLLISPVSRDDSGIYSCTATNVHGMDESKGRLIVLHGPSYYEQLPPKITIAAHRNL 99
L I+ + D+G Y C H S+ + L G Y+ + P T+AA+
Sbjct: 65 IVVSQLRITSLQLSDTGQYQCLVFLGHQTFVSQPGYVGLEGLPYFLEEPEDRTVAANTPF 124
Query: 100 QLRCSAH-TEELLDVAYIWTHNGVRI----GNMDLNELETPNIN 138
L C A E +D+ +W + V + G+ L P +N
Sbjct: 125 NLSCQAQGPPEPVDL--LWLQDAVPLATAPGHGPQRSLHVPGLN 166
>pdb|1X5A|A Chain A, The Solution Structure Of The Second Fibronectin Type Iii
Domain Of Mouse Ephrin Type-A Receptor 1
Length = 107
Score = 30.8 bits (68), Expect = 2.6, Method: Composition-based stats.
Identities = 17/45 (37%), Positives = 23/45 (51%), Gaps = 3/45 (6%)
Query: 455 LIVGLQPDTKYYVKVMAYNNAGEGPESERYLERTYRKAPQKPPSA 499
L+ LQPDT Y V+V G GP S + +R +P PS+
Sbjct: 65 LLTKLQPDTTYIVRVRTLTPLGPGPFSP---DHEFRTSPPSGPSS 106
>pdb|2YR3|A Chain A, Solution Structure Of The Fourth Ig-Like Domain From
Myosin Light Chain Kinase, Smooth Muscle
Length = 99
Score = 30.8 bits (68), Expect = 2.7, Method: Composition-based stats.
Identities = 20/66 (30%), Positives = 27/66 (40%), Gaps = 4/66 (6%)
Query: 4 EGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENG--NLLISPVSRDDSGIYSCT 61
EG + + C+ P P+ W +G I R E G L I +D G Y+C
Sbjct: 25 EGQDFVLQCSVRGTPVPRITWLLNGQPIQYA--RSTCEAGVAELHIQDALPEDHGTYTCL 82
Query: 62 ATNVHG 67
A N G
Sbjct: 83 AENALG 88
>pdb|2ED8|A Chain A, Solution Structure Of The Second Fibronectin Type Iii
Domain Of Human Netrin Receptor Dcc
Length = 106
Score = 30.4 bits (67), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 34/75 (45%), Gaps = 10/75 (13%)
Query: 405 TAINVTWNPIELIRENIRG-RLIGHRIKYWKEDNPEETAVYYLSRTTRNWALIVGLQPDT 463
T+I +TW P ++G RL + KE N E + Y + GL+ T
Sbjct: 22 TSILITWEPPAYANGPVQGYRLFCTEVSTGKEQNIEVDGLSYK---------LEGLKKFT 72
Query: 464 KYYVKVMAYNNAGEG 478
+Y ++ +AYN G G
Sbjct: 73 EYSLRFLAYNRYGPG 87
>pdb|2CKN|A Chain A, Nmr Structure Of The First Ig Module Of Mouse Fgfr1
Length = 95
Score = 30.4 bits (67), Expect = 3.0, Method: Composition-based stats.
Identities = 24/73 (32%), Positives = 35/73 (47%), Gaps = 12/73 (16%)
Query: 99 LQLRCSAHTEELLDVAYI-WTHNGVRIGNMDLNELETPNINIDGGLLEITNASFADAGEY 157
LQLRC DV I W +GV++ +E+ I G +E+ ++ AD+G Y
Sbjct: 27 LQLRCRLRD----DVQSINWLRDGVQL-------VESNRTRITGEEVEVRDSIPADSGLY 75
Query: 158 ECVVKSTVGKIST 170
CV S G +T
Sbjct: 76 ACVTSSPSGSDTT 88
>pdb|2Y7Q|A Chain A, The High-Affinity Complex Between Ige And Its Receptor Fc
Epsilon Ri
Length = 188
Score = 30.4 bits (67), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 33/73 (45%), Gaps = 16/73 (21%)
Query: 88 PPKITIAAHRNLQLRCSAHTEELLDVAYI-WTHNGVRIGNMDLNELETPNINIDGGLLEI 146
PP I N+ L C+ + +V+ W HNG L+E ++NI
Sbjct: 14 PPWNRIFKGENVTLTCNGNN--FFEVSSTKWFHNG------SLSEETNSSLNI------- 58
Query: 147 TNASFADAGEYEC 159
NA F D+GEY+C
Sbjct: 59 VNAKFEDSGEYKC 71
>pdb|3ZYJ|A Chain A, Netring1 In Complex With Ngl1
pdb|3ZYJ|C Chain C, Netring1 In Complex With Ngl1
Length = 440
Score = 30.4 bits (67), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 12/35 (34%), Positives = 18/35 (51%)
Query: 139 IDGGLLEITNASFADAGEYECVVKSTVGKISTKTT 173
+ G L TN + D G Y C+V ++VG + T
Sbjct: 394 LSDGTLNFTNVTVQDTGMYTCMVSNSVGNTTASAT 428
>pdb|1F2Q|A Chain A, Crystal Structure Of The Human High-Affinity Ige Receptor
pdb|1J86|A Chain A, Human High Affinity Fc Receptor Fc(Epsilon)ri(Alpha),
Monoclinic Crystal Form 2
pdb|1J86|B Chain B, Human High Affinity Fc Receptor Fc(Epsilon)ri(Alpha),
Monoclinic Crystal Form 2
pdb|1RPQ|A Chain A, High Affinity Ige Receptor (Alpha Chain) Complexed With
Tight-Binding E131 'zeta' Peptide From Phage Display
pdb|1RPQ|B Chain B, High Affinity Ige Receptor (Alpha Chain) Complexed With
Tight-Binding E131 'zeta' Peptide From Phage Display
pdb|1RPQ|C Chain C, High Affinity Ige Receptor (Alpha Chain) Complexed With
Tight-Binding E131 'zeta' Peptide From Phage Display
pdb|1RPQ|D Chain D, High Affinity Ige Receptor (Alpha Chain) Complexed With
Tight-Binding E131 'zeta' Peptide From Phage Display
Length = 176
Score = 30.0 bits (66), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 33/73 (45%), Gaps = 16/73 (21%)
Query: 88 PPKITIAAHRNLQLRCSAHTEELLDVAYI-WTHNGVRIGNMDLNELETPNINIDGGLLEI 146
PP I N+ L C+ + +V+ W HNG L+E ++NI
Sbjct: 11 PPWNRIFKGENVTLTCNGNN--FFEVSSTKWFHNG------SLSEETNSSLNI------- 55
Query: 147 TNASFADAGEYEC 159
NA F D+GEY+C
Sbjct: 56 VNAKFEDSGEYKC 68
>pdb|2XOT|A Chain A, Crystal Structure Of Neuronal Leucine Rich Repeat Protein
Amigo-1
pdb|2XOT|B Chain B, Crystal Structure Of Neuronal Leucine Rich Repeat Protein
Amigo-1
Length = 361
Score = 30.0 bits (66), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 29/64 (45%), Gaps = 4/64 (6%)
Query: 2 AGEGGNVTIFCNPEAAPKPKFVWKKDGN--IIGSGGRRKI-FENGNLLISPVSRDDSGIY 58
A G +TI C+ + K VW N ++ G + NG+L V +D G+Y
Sbjct: 258 AHLGDTLTIRCDTKQQGMTK-VWVSPSNEQVLSQGSNGSVSVRNGDLFFKKVQVEDGGVY 316
Query: 59 SCTA 62
+C A
Sbjct: 317 TCYA 320
>pdb|1J89|A Chain A, Human High Affinity Fc Receptor Fc(Epsilon)ri(Alpha),
Tetragonal Crystal Form 2
pdb|1J89|B Chain B, Human High Affinity Fc Receptor Fc(Epsilon)ri(Alpha),
Tetragonal Crystal Form 2
pdb|1J89|C Chain C, Human High Affinity Fc Receptor Fc(Epsilon)ri(Alpha),
Tetragonal Crystal Form 2
pdb|1J89|D Chain D, Human High Affinity Fc Receptor Fc(Epsilon)ri(Alpha),
Tetragonal Crystal Form 2
pdb|1J89|E Chain E, Human High Affinity Fc Receptor Fc(Epsilon)ri(Alpha),
Tetragonal Crystal Form 2
pdb|1J88|A Chain A, Human High Affinity Fc Receptor Fc(epsilon)ri(alpha),
Tetragonal Crystal Form 1
pdb|1J88|B Chain B, Human High Affinity Fc Receptor Fc(epsilon)ri(alpha),
Tetragonal Crystal Form 1
pdb|1J88|C Chain C, Human High Affinity Fc Receptor Fc(epsilon)ri(alpha),
Tetragonal Crystal Form 1
pdb|1J88|D Chain D, Human High Affinity Fc Receptor Fc(epsilon)ri(alpha),
Tetragonal Crystal Form 1
pdb|1J88|E Chain E, Human High Affinity Fc Receptor Fc(epsilon)ri(alpha),
Tetragonal Crystal Form 1
Length = 172
Score = 30.0 bits (66), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 33/73 (45%), Gaps = 16/73 (21%)
Query: 88 PPKITIAAHRNLQLRCSAHTEELLDVAYI-WTHNGVRIGNMDLNELETPNINIDGGLLEI 146
PP I N+ L C+ + +V+ W HNG L+E ++NI
Sbjct: 11 PPWNRIFKGENVTLTCNGNN--FFEVSSTKWFHNG------SLSEETNSSLNI------- 55
Query: 147 TNASFADAGEYEC 159
NA F D+GEY+C
Sbjct: 56 VNAKFEDSGEYKC 68
>pdb|1F6A|A Chain A, Structure Of The Human Ige-Fc Bound To Its High Affinity
Receptor Fc(Epsilon)ri(Alpha)
Length = 176
Score = 30.0 bits (66), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 33/73 (45%), Gaps = 16/73 (21%)
Query: 88 PPKITIAAHRNLQLRCSAHTEELLDVAYI-WTHNGVRIGNMDLNELETPNINIDGGLLEI 146
PP I N+ L C+ + +V+ W HNG L+E ++NI
Sbjct: 11 PPWNRIFKGENVTLTCNGNN--FFEVSSTKWFHNG------SLSEETNSSLNI------- 55
Query: 147 TNASFADAGEYEC 159
NA F D+GEY+C
Sbjct: 56 VNAKFEDSGEYKC 68
>pdb|1WJ3|A Chain A, Solution Structure Of The Fourth Fn3 Domain Of Kiaa1496
Protein
Length = 117
Score = 30.0 bits (66), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 42/96 (43%), Gaps = 7/96 (7%)
Query: 488 TYRKAPQKPPSAVHIKGINPTTVHVTWRYVSPSFEEEPIIGYKVRVWEVDQDMSRANDTI 547
T + P +PP V + T V + W V E + GYKV Q+ + +T
Sbjct: 13 TKKTPPSQPPGNV-VWNATDTKVLLNWEQVKAMENESEVTGYKVFYRTSSQNNVQVLNT- 70
Query: 548 IPVGNTLDADIVDLSPGKRYHMRVLAFSNGGDGRMS 583
N A++V L + Y + V A ++GGDG S
Sbjct: 71 ----NKTSAELV-LPIKEDYIIEVKATTDGGDGTSS 101
>pdb|1X4X|A Chain A, Solution Structure Of The 6th Fibronectin Type Iii Domain
From Human Fibronectin Type Iii Domain Containing
Protein 3
Length = 106
Score = 30.0 bits (66), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 14/27 (51%), Positives = 16/27 (59%)
Query: 456 IVGLQPDTKYYVKVMAYNNAGEGPESE 482
I GL P T YY +V A + G GP SE
Sbjct: 65 IKGLSPATTYYCRVQALSVVGAGPFSE 91
>pdb|1J87|A Chain A, Human High Affinity Fc Receptor Fc(Epsilon)ri(Alpha),
Hexagonal Crystal Form 1
Length = 172
Score = 30.0 bits (66), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 33/73 (45%), Gaps = 16/73 (21%)
Query: 88 PPKITIAAHRNLQLRCSAHTEELLDVAYI-WTHNGVRIGNMDLNELETPNINIDGGLLEI 146
PP I N+ L C+ + +V+ W HNG L+E ++NI
Sbjct: 11 PPWNRIFKGENVTLTCNGNN--FFEVSSTKWFHNG------SLSEETNSSLNI------- 55
Query: 147 TNASFADAGEYEC 159
NA F D+GEY+C
Sbjct: 56 VNAKFEDSGEYKC 68
>pdb|2DOC|A Chain A, Solution Structure Of The Fibronectin Type-Iii Domain Of
Human Neural Cell Adhesion Molecule 2
Length = 119
Score = 29.6 bits (65), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 29/66 (43%), Gaps = 10/66 (15%)
Query: 207 GRPITHYKIIARTNWNSTWFNVSEHVIGKEVDRYTGRKEASIENVLVPWSTYEFKVIAGN 266
G PI HY++ + + W V H G + + N L P +TYE +V A N
Sbjct: 46 GVPIHHYQVDVKEVASEIWKIVRSH----------GVQTMVVLNNLEPNTTYEIRVAAVN 95
Query: 267 ELGYGE 272
G G+
Sbjct: 96 GKGQGD 101
>pdb|3ZYO|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
And Immunoglobulin Domain Of Netrin-G Ligand-3
Length = 411
Score = 29.6 bits (65), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 11/35 (31%), Positives = 18/35 (51%)
Query: 139 IDGGLLEITNASFADAGEYECVVKSTVGKISTKTT 173
+ G L TN + D G+Y C+V ++ G + T
Sbjct: 365 LHDGTLNFTNVTVQDTGQYTCMVTNSAGNTTASAT 399
>pdb|3L5H|A Chain A, Crystal Structure Of The Full Ectodomain Of Human Gp130:
New Insights Into The Molecular Assembly Of Receptor
Complexes
Length = 589
Score = 29.3 bits (64), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 27/97 (27%), Positives = 44/97 (45%), Gaps = 9/97 (9%)
Query: 198 IQWTDGATNGRPITHYKIIARTNWNSTWFNVSEHVIGKEVDRYTGRKEASIENVLVPWST 257
+ WT+ + I Y I RT STW + D + R ++++ L P++
Sbjct: 219 LTWTNPSIKSVIILKYNIQYRTKDASTWSQIPPE------DTASTRSSFTVQD-LKPFTE 271
Query: 258 YEFKVIAGNELGYGEPSSPSPQYN--TPADKPYQAPS 292
Y F++ E G G S S + + T D+P +APS
Sbjct: 272 YVFRIRCMKEDGKGYWSDWSEEASGITYEDRPSKAPS 308
>pdb|2R15|A Chain A, Crystal Structure Of The Myomesin Domains 12 And 13
pdb|2R15|B Chain B, Crystal Structure Of The Myomesin Domains 12 And 13
Length = 212
Score = 29.3 bits (64), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 30/72 (41%), Gaps = 4/72 (5%)
Query: 4 EGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKI-FENGN---LLISPVSRDDSGIYS 59
EG + + CN P P+ W K+ + + FE G I+ VS DSG Y
Sbjct: 131 EGKALNLTCNVWGDPPPEVSWLKNEKALAQTDHCNLKFEAGRTAYFTINGVSTADSGKYG 190
Query: 60 CTATNVHGMDES 71
N +G + S
Sbjct: 191 LVVKNKYGSETS 202
>pdb|1ZLG|A Chain A, Solution Structure Of The Extracellular Matrix Protein
Anosmin-1
Length = 680
Score = 29.3 bits (64), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 25/46 (54%), Gaps = 5/46 (10%)
Query: 456 IVGLQPDTKYYVKVMAYNNAGEGPESERYLERTYRKAPQKPPSAVH 501
+ L+P T Y ++V GEGP + +T+R P+ PPS+ H
Sbjct: 598 VPNLRPSTLYRLEVQVLTPGGEGPAT----IKTFR-TPELPPSSAH 638
>pdb|1X5J|A Chain A, The Solution Structure Of The Fifth Fibronectin Type Iii
Domain Of Human Neogenin
Length = 113
Score = 29.3 bits (64), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 39/88 (44%), Gaps = 6/88 (6%)
Query: 385 SAEDMPQVAPQGVFSRGFNSTAINVTW--NPIELIRENIRGRLIGHRIKYWKEDNPEETA 442
S P + P GV + + I +TW N + ++ R R WK + P T
Sbjct: 3 SGSSGPMMPPVGVQASILSHDTIRITWADNSLPKHQKITDSRYYTVR---WKTNIPANTK 59
Query: 443 VYYLSRTTRNWALIVGLQPDTKYYVKVM 470
+ TT ++ L+ GL+P+T Y VM
Sbjct: 60 YKNANATTLSY-LVTGLKPNTLYEFSVM 86
>pdb|4FOM|A Chain A, Crystal Structure Of Human Nectin-3 Full Ectodomain
(D1-D3)
Length = 308
Score = 28.9 bits (63), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 41/87 (47%), Gaps = 15/87 (17%)
Query: 1 YAGEGGNVTIFCNPEAAPKP-KFVWKK-DGN----IIGSGGRRKIFENGNLLISPVSRDD 54
+ G G V + CN +A P P K VW + DG ++ S +N + P++ +
Sbjct: 224 FVGRKG-VNLKCNADANPPPFKSVWSRLDGQWPDGLLAS-------DNTLHFVHPLTFNY 275
Query: 55 SGIYSCTATNVHGMDESKGRLIVLHGP 81
SG+Y C TN G S ++I + P
Sbjct: 276 SGVYICKVTNSLGQ-RSDQKVIYISDP 301
>pdb|2DKM|A Chain A, Solution Structures Of The Fn3 Domain Of Human Collagen
Alpha-1(Xx) Chain
Length = 104
Score = 28.9 bits (63), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 10/24 (41%), Positives = 15/24 (62%)
Query: 492 APQKPPSAVHIKGINPTTVHVTWR 515
P PP A+ + + P TVH+TW+
Sbjct: 7 GPLPPPRALTLAAVTPRTVHLTWQ 30
>pdb|1UJT|A Chain A, Solution Structure Of The Second Fibronectin Type Iii
Domain Of Human Kiaa1568 Protein
Length = 120
Score = 28.9 bits (63), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 30/100 (30%), Positives = 44/100 (44%), Gaps = 10/100 (10%)
Query: 505 INPTTVHVTWRYVSPSFEEEP--IIGYKVRVWEVD--QDMSRANDTIIPVGNTLDADIVD 560
+ PTTV VTW + + +P I GY+V + Q S + V A +V+
Sbjct: 27 LTPTTVQVTW-----TVDRQPQFIQGYRVMYRQTSGLQATSSWQNLDAKVPTERSAVLVN 81
Query: 561 LSPGKRYHMRVLAFSNGGDGRMSSPAITFQMGEEKEFKSG 600
L G Y ++V + N G M S + T + EE SG
Sbjct: 82 LKKGVTYEIKVRPYFNEFQG-MDSESKTVRTTEESGPSSG 120
>pdb|2V5R|A Chain A, Structural Basis For Dscam Isoform Specificity
pdb|2V5R|B Chain B, Structural Basis For Dscam Isoform Specificity
Length = 391
Score = 28.9 bits (63), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 25/71 (35%), Gaps = 8/71 (11%)
Query: 6 GNVTIF-CNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTATN 64
G +F C P W KDG IG L I V ++D G+Y C N
Sbjct: 325 GRPAVFTCQYTGNPIKTVSWMKDGKAIG-------HSESVLRIESVKKEDKGMYQCFVRN 377
Query: 65 VHGMDESKGRL 75
E+ L
Sbjct: 378 DRESAEASAEL 388
Score = 28.9 bits (63), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 20/32 (62%)
Query: 142 GLLEITNASFADAGEYECVVKSTVGKISTKTT 173
G L I +A D+G+Y CVV ++VG S +T
Sbjct: 273 GTLIIKDAVVEDSGKYLCVVNNSVGGESVETV 304
>pdb|1TTF|A Chain A, The Three-Dimensional Structure Of The Tenth Type Iii
Module Of Fibronectin: An Insight Into Rgd-Mediated
Interactions
pdb|1TTG|A Chain A, The Three-Dimensional Structure Of The Tenth Type Iii
Module Of Fibronectin: An Insight Into Rgd-Mediated
Interactions
Length = 94
Score = 28.9 bits (63), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 13/41 (31%), Positives = 21/41 (51%)
Query: 450 TRNWALIVGLQPDTKYYVKVMAYNNAGEGPESERYLERTYR 490
+++ A I GL+P Y + V A G+ P S + + YR
Sbjct: 53 SKSTATISGLKPGVDYTITVYAVTGRGDSPASSKPISINYR 93
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.315 0.134 0.408
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 19,939,859
Number of Sequences: 62578
Number of extensions: 899529
Number of successful extensions: 2262
Number of sequences better than 100.0: 191
Number of HSP's better than 100.0 without gapping: 99
Number of HSP's successfully gapped in prelim test: 92
Number of HSP's that attempted gapping in prelim test: 1756
Number of HSP's gapped (non-prelim): 431
length of query: 626
length of database: 14,973,337
effective HSP length: 105
effective length of query: 521
effective length of database: 8,402,647
effective search space: 4377779087
effective search space used: 4377779087
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 54 (25.4 bits)