Query psy12061
Match_columns 626
No_of_seqs 319 out of 2408
Neff 11.6
Searched_HMMs 46136
Date Fri Aug 16 17:40:09 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy12061.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/12061hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3513|consensus 100.0 5.7E-72 1.2E-76 556.8 54.6 578 1-598 437-1022(1051)
2 KOG3513|consensus 100.0 2.6E-67 5.5E-72 523.6 59.9 563 2-597 343-919 (1051)
3 KOG4221|consensus 100.0 3.4E-66 7.4E-71 511.8 49.4 550 2-591 249-812 (1381)
4 KOG4221|consensus 100.0 2E-61 4.4E-66 478.0 51.9 547 2-592 152-711 (1381)
5 KOG4222|consensus 100.0 3.7E-46 8E-51 367.9 34.1 571 2-592 143-845 (1281)
6 KOG4222|consensus 100.0 1.7E-37 3.7E-42 307.0 27.5 460 2-486 327-841 (1281)
7 KOG4194|consensus 99.9 1.1E-23 2.3E-28 196.3 22.3 248 2-270 515-786 (873)
8 PHA02785 IL-beta-binding prote 99.9 9.8E-22 2.1E-26 184.3 24.8 249 1-269 37-316 (326)
9 PHA02826 IL-1 receptor-like pr 99.9 2.1E-21 4.6E-26 169.5 18.2 152 1-166 33-212 (227)
10 KOG4194|consensus 99.9 4.8E-21 1E-25 178.8 15.2 170 3-180 625-799 (873)
11 PHA02785 IL-beta-binding prote 99.8 1.4E-19 2.9E-24 169.9 19.8 162 2-168 133-318 (326)
12 KOG0196|consensus 99.8 2.9E-19 6.3E-24 172.7 14.9 195 389-594 330-537 (996)
13 cd05852 Ig5_Contactin-1 Fifth 99.8 5.8E-19 1.3E-23 124.7 9.4 73 5-77 1-73 (73)
14 cd05745 Ig3_Peroxidasin Third 99.8 1.6E-18 3.4E-23 124.2 9.2 74 4-77 1-74 (74)
15 KOG0196|consensus 99.8 7.9E-17 1.7E-21 156.1 22.1 218 261-491 309-537 (996)
16 cd05892 Ig_Myotilin_C C-termin 99.7 1.2E-17 2.6E-22 118.3 8.7 70 8-77 1-75 (75)
17 cd05723 Ig4_Neogenin Fourth im 99.7 2.4E-17 5.2E-22 116.7 9.4 71 7-77 1-71 (71)
18 cd05762 Ig8_MLCK Eighth immuno 99.7 4.4E-17 9.5E-22 123.0 10.5 80 2-81 12-94 (98)
19 cd04969 Ig5_Contactin_like Fif 99.7 3.6E-17 7.9E-22 116.9 9.5 73 5-77 1-73 (73)
20 cd05868 Ig4_NrCAM Fourth immun 99.7 6.9E-17 1.5E-21 115.9 9.4 73 5-77 1-75 (76)
21 cd05867 Ig4_L1-CAM_like Fourth 99.7 1.2E-16 2.6E-21 115.1 10.2 73 5-77 1-75 (76)
22 cd05893 Ig_Palladin_C C-termin 99.7 5.5E-17 1.2E-21 115.2 8.2 70 8-77 1-75 (75)
23 cd04975 Ig4_SCFR_like Fourth i 99.7 5.4E-17 1.2E-21 122.4 8.6 77 2-78 15-100 (101)
24 cd05851 Ig3_Contactin-1 Third 99.7 1E-16 2.2E-21 118.7 9.3 75 2-77 13-87 (88)
25 cd05762 Ig8_MLCK Eighth immuno 99.7 4.3E-16 9.3E-21 117.6 12.2 91 85-184 4-98 (98)
26 cd05894 Ig_C5_MyBP-C C5 immuno 99.7 2.7E-16 5.8E-21 115.6 9.8 76 2-77 7-86 (86)
27 cd05735 Ig8_DSCAM Eight immuno 99.7 3.3E-16 7.3E-21 115.8 10.4 77 5-81 1-85 (88)
28 cd05746 Ig4_Peroxidasin Fourth 99.7 1.6E-16 3.5E-21 111.8 8.2 68 8-75 1-68 (69)
29 KOG4258|consensus 99.7 5.9E-16 1.3E-20 150.6 13.9 287 293-589 493-921 (1025)
30 cd05853 Ig6_Contactin-4 Sixth 99.7 3.5E-16 7.6E-21 112.6 9.4 76 6-81 1-85 (85)
31 cd05737 Ig_Myomesin_like_C C-t 99.7 2.9E-16 6.4E-21 117.9 9.4 76 2-77 13-92 (92)
32 cd05744 Ig_Myotilin_C_like Imm 99.7 4E-16 8.7E-21 111.4 9.3 70 8-77 1-75 (75)
33 cd05865 Ig1_NCAM-1 First immun 99.7 3.2E-16 6.9E-21 117.2 8.9 76 2-77 12-95 (96)
34 cd05738 Ig2_RPTP_IIa_LAR_like 99.7 4.3E-16 9.4E-21 111.3 9.1 70 8-77 1-73 (74)
35 cd05854 Ig6_Contactin-2 Sixth 99.7 6.6E-16 1.4E-20 113.2 10.1 76 6-81 1-85 (85)
36 cd04978 Ig4_L1-NrCAM_like Four 99.7 5.8E-16 1.2E-20 112.2 9.7 73 5-77 1-75 (76)
37 cd05728 Ig4_Contactin-2-like F 99.7 4.2E-16 9.2E-21 114.9 8.8 75 2-77 11-85 (85)
38 cd05863 Ig2_VEGFR-3 Second imm 99.7 4.4E-16 9.6E-21 106.7 8.2 65 8-77 1-65 (67)
39 cd05726 Ig4_Robo Fhird immunog 99.7 7.5E-16 1.6E-20 115.2 10.0 76 5-80 1-84 (90)
40 cd05876 Ig3_L1-CAM Third immun 99.7 4.7E-16 1E-20 110.1 8.1 70 8-77 1-70 (71)
41 cd04968 Ig3_Contactin_like Thi 99.6 1.1E-15 2.3E-20 114.0 9.3 75 2-77 13-87 (88)
42 cd05859 Ig4_PDGFR-alpha Fourth 99.6 8.7E-16 1.9E-20 116.1 8.8 77 2-78 15-100 (101)
43 cd05725 Ig3_Robo Third immunog 99.6 1.1E-15 2.4E-20 107.8 8.5 69 8-77 1-69 (69)
44 cd05730 Ig3_NCAM-1_like Third 99.6 2E-15 4.3E-20 114.5 10.2 77 2-78 15-93 (95)
45 cd05764 Ig_2 Subgroup of the i 99.6 1.7E-15 3.8E-20 108.8 9.3 73 5-77 1-74 (74)
46 cd05739 Ig3_RPTP_IIa_LAR_like 99.6 1.7E-15 3.7E-20 105.8 9.0 68 5-75 1-68 (69)
47 cd05857 Ig2_FGFR Second immuno 99.6 2.2E-15 4.8E-20 111.9 10.1 76 2-77 6-85 (85)
48 cd04976 Ig2_VEGFR Second immun 99.6 1.6E-15 3.5E-20 107.0 8.8 69 8-77 1-69 (71)
49 cd05864 Ig2_VEGFR-2 Second imm 99.6 1.2E-15 2.6E-20 106.2 8.0 68 8-77 1-68 (70)
50 cd05743 Ig_Perlecan_D2_like Im 99.6 1.4E-15 3.1E-20 110.0 8.8 73 5-77 1-76 (78)
51 cd05748 Ig_Titin_like Immunogl 99.6 2.5E-15 5.4E-20 107.9 9.8 71 7-77 1-74 (74)
52 cd04970 Ig6_Contactin_like Six 99.6 1.7E-15 3.8E-20 111.9 8.8 76 6-81 1-85 (85)
53 cd05851 Ig3_Contactin-1 Third 99.6 4.5E-15 9.7E-20 109.9 10.9 87 81-177 2-88 (88)
54 cd04973 Ig1_FGFR First immunog 99.6 3.2E-15 6.9E-20 108.3 9.1 74 2-77 6-79 (79)
55 cd05747 Ig5_Titin_like M5, fif 99.6 4.2E-15 9.1E-20 111.7 9.8 74 2-75 15-91 (92)
56 cd04972 Ig_TrkABC_d4 Fourth do 99.6 2.9E-15 6.3E-20 112.0 8.9 76 2-77 12-90 (90)
57 cd05724 Ig2_Robo Second immuno 99.6 4.6E-15 1E-19 110.6 9.7 76 2-77 8-86 (86)
58 cd05866 Ig1_NCAM-2 First immun 99.6 3.9E-15 8.4E-20 110.0 9.1 75 2-77 12-91 (92)
59 cd05740 Ig_CEACAM_D4 Fourth im 99.6 7.2E-15 1.6E-19 109.1 10.4 74 2-77 15-90 (91)
60 cd05855 Ig_TrkB_d5 Fifth domai 99.6 4.1E-15 8.8E-20 105.4 8.3 67 10-76 3-77 (79)
61 cd05854 Ig6_Contactin-2 Sixth 99.6 7.4E-15 1.6E-19 107.7 9.9 83 97-180 1-85 (85)
62 cd05853 Ig6_Contactin-4 Sixth 99.6 8.4E-15 1.8E-19 105.5 9.8 80 97-180 1-85 (85)
63 cd05848 Ig1_Contactin-5 First 99.6 7.7E-15 1.7E-19 110.1 10.0 70 3-72 17-88 (94)
64 cd05722 Ig1_Neogenin First imm 99.6 6.1E-15 1.3E-19 111.7 9.5 76 2-77 11-95 (95)
65 cd05891 Ig_M-protein_C C-termi 99.6 7E-15 1.5E-19 109.9 9.6 76 2-77 13-92 (92)
66 cd05849 Ig1_Contactin-1 First 99.6 9.2E-15 2E-19 109.0 9.9 71 5-75 19-91 (93)
67 cd05760 Ig2_PTK7 Second immuno 99.6 6.3E-15 1.4E-19 106.1 8.7 69 8-76 1-71 (77)
68 cd05763 Ig_1 Subgroup of the i 99.6 5.6E-15 1.2E-19 106.3 8.4 70 8-77 1-74 (75)
69 cd07702 Ig2_VEGFR-1 Second imm 99.6 6.6E-15 1.4E-19 102.5 8.4 66 8-73 1-66 (72)
70 cd05870 Ig5_NCAM-2 Fifth immun 99.6 6.8E-15 1.5E-19 112.0 9.0 76 2-77 13-98 (98)
71 cd04974 Ig3_FGFR Third immunog 99.6 7.7E-15 1.7E-19 109.4 9.0 73 5-77 1-89 (90)
72 cd05735 Ig8_DSCAM Eight immuno 99.6 1.4E-14 3E-19 107.2 10.2 80 96-183 1-88 (88)
73 cd05773 Ig8_hNephrin_like Eigh 99.6 1.8E-14 3.9E-19 111.3 10.8 79 3-81 21-108 (109)
74 cd05858 Ig3_FGFR-2 Third immun 99.6 1.1E-14 2.5E-19 108.7 9.2 73 5-77 1-89 (90)
75 PF07679 I-set: Immunoglobulin 99.6 6.9E-15 1.5E-19 110.9 8.1 76 2-77 12-90 (90)
76 cd04971 Ig_TrKABC_d5 Fifth dom 99.6 1.3E-14 2.7E-19 104.8 8.7 67 10-76 3-79 (81)
77 cd05731 Ig3_L1-CAM_like Third 99.6 9.2E-15 2E-19 104.3 7.9 70 8-77 1-70 (71)
78 cd05869 Ig5_NCAM-1 Fifth immun 99.6 1.2E-14 2.5E-19 110.5 8.9 74 4-77 16-97 (97)
79 cd05756 Ig1_IL1R_like First im 99.6 8.2E-15 1.8E-19 109.3 7.7 76 1-77 10-94 (94)
80 cd05850 Ig1_Contactin-2 First 99.6 3.1E-14 6.8E-19 106.9 10.7 71 4-75 18-92 (94)
81 cd05732 Ig5_NCAM-1_like Fifth 99.6 2.5E-14 5.3E-19 109.1 9.2 76 2-77 13-96 (96)
82 cd04968 Ig3_Contactin_like Thi 99.5 7.3E-14 1.6E-18 104.1 11.4 88 81-177 1-88 (88)
83 cd04970 Ig6_Contactin_like Six 99.5 5.5E-14 1.2E-18 103.9 9.6 84 97-180 1-85 (85)
84 cd05745 Ig3_Peroxidasin Third 99.5 5E-14 1.1E-18 100.8 9.1 74 95-176 1-74 (74)
85 cd05728 Ig4_Contactin-2-like F 99.5 7.7E-14 1.7E-18 102.8 10.1 82 86-176 4-85 (85)
86 cd05734 Ig7_DSCAM Seventh immu 99.5 3.9E-14 8.5E-19 103.0 8.2 69 8-76 1-78 (79)
87 cd07693 Ig1_Robo First immunog 99.5 6.6E-14 1.4E-18 108.2 9.9 76 2-77 13-99 (100)
88 cd05856 Ig2_FGFRL1-like Second 99.5 3.8E-14 8.3E-19 104.7 8.2 75 3-77 7-82 (82)
89 cd05736 Ig2_Follistatin_like S 99.5 9.2E-14 2E-18 100.3 9.9 71 8-78 1-74 (76)
90 cd05765 Ig_3 Subgroup of the i 99.5 6.5E-14 1.4E-18 102.9 9.2 73 5-77 1-81 (81)
91 cd05758 Ig5_KIRREL3-like Fifth 99.5 6.3E-14 1.4E-18 106.6 9.3 75 1-75 12-97 (98)
92 cd05852 Ig5_Contactin-1 Fifth 99.5 7.2E-14 1.6E-18 98.7 8.8 72 96-176 1-73 (73)
93 cd04975 Ig4_SCFR_like Fourth i 99.5 1.7E-13 3.7E-18 103.4 10.6 83 88-177 10-100 (101)
94 cd05749 Ig2_Tyro3_like Second 99.5 6.3E-14 1.4E-18 100.8 7.8 65 2-71 10-75 (81)
95 cd05875 Ig6_hNeurofascin_like 99.5 9.3E-14 2E-18 99.6 8.6 65 8-72 1-72 (77)
96 cd05737 Ig_Myomesin_like_C C-t 99.5 1.7E-13 3.7E-18 102.8 10.3 86 84-176 4-92 (92)
97 cd04977 Ig1_NCAM-1_like First 99.5 9.7E-14 2.1E-18 103.7 8.8 74 2-76 12-91 (92)
98 cd05874 Ig6_NrCAM Sixth immuno 99.5 1.2E-13 2.5E-18 99.1 8.6 65 8-72 1-72 (77)
99 cd05894 Ig_C5_MyBP-C C5 immuno 99.5 2.5E-13 5.5E-18 99.8 10.5 79 90-176 4-86 (86)
100 cd05733 Ig6_L1-CAM_like Sixth 99.5 1.2E-13 2.5E-18 99.5 8.2 64 8-71 1-71 (77)
101 cd05873 Ig_Sema4D_like Immunog 99.5 1.9E-13 4.1E-18 98.8 8.9 63 2-66 8-71 (87)
102 cd05867 Ig4_L1-CAM_like Fourth 99.5 3.3E-13 7.2E-18 97.1 10.1 75 96-176 1-75 (76)
103 cd05892 Ig_Myotilin_C C-termin 99.5 1.9E-13 4.1E-18 96.9 8.5 70 99-176 1-75 (75)
104 cd04972 Ig_TrkABC_d4 Fourth do 99.5 3E-13 6.6E-18 101.1 10.1 87 85-176 4-90 (90)
105 cd05747 Ig5_Titin_like M5, fif 99.5 4.9E-13 1.1E-17 100.4 10.5 85 80-174 3-91 (92)
106 cd05863 Ig2_VEGFR-3 Second imm 99.5 3.3E-13 7.2E-18 92.5 8.3 66 99-177 1-66 (67)
107 cd05773 Ig8_hNephrin_like Eigh 99.5 7.1E-13 1.5E-17 102.4 11.1 95 79-181 3-109 (109)
108 cd04967 Ig1_Contactin First Ig 99.5 3.6E-13 7.8E-18 100.9 9.1 67 4-71 18-87 (91)
109 cd05893 Ig_Palladin_C C-termin 99.5 2.8E-13 6.1E-18 96.2 7.9 70 99-176 1-75 (75)
110 cd05750 Ig_Pro_neuregulin Immu 99.5 2.2E-13 4.7E-18 98.4 7.5 67 8-74 1-74 (75)
111 cd04973 Ig1_FGFR First immunog 99.5 5.6E-13 1.2E-17 96.5 9.5 79 88-176 1-79 (79)
112 cd05865 Ig1_NCAM-1 First immun 99.5 8.8E-13 1.9E-17 98.7 10.7 83 87-176 6-95 (96)
113 cd05868 Ig4_NrCAM Fourth immun 99.5 7.2E-13 1.6E-17 95.0 9.8 75 96-176 1-75 (76)
114 cd05723 Ig4_Neogenin Fourth im 99.4 8E-13 1.7E-17 93.5 9.6 70 98-176 1-71 (71)
115 cd05740 Ig_CEACAM_D4 Fourth im 99.4 9.1E-13 2E-17 97.8 10.3 82 86-176 8-90 (91)
116 cd05771 IgC_Tapasin_R Tapasin- 99.4 1.7E-12 3.7E-17 106.1 12.5 119 44-165 2-131 (139)
117 cd05730 Ig3_NCAM-1_like Third 99.4 1.8E-12 4E-17 98.2 11.4 83 88-178 10-94 (95)
118 cd05742 Ig1_VEGFR_like First i 99.4 4.2E-13 9.1E-18 98.9 7.5 73 5-77 1-83 (84)
119 cd05757 Ig2_IL1R_like Second i 99.4 6E-13 1.3E-17 98.4 7.8 73 2-75 7-84 (92)
120 cd05727 Ig2_Contactin-2-like S 99.4 3.8E-13 8.2E-18 98.6 6.6 68 2-69 15-86 (96)
121 cd05859 Ig4_PDGFR-alpha Fourth 99.4 2.1E-12 4.5E-17 97.7 10.7 86 90-177 12-100 (101)
122 cd05739 Ig3_RPTP_IIa_LAR_like 99.4 1.6E-12 3.5E-17 90.8 9.2 68 96-174 1-68 (69)
123 cd05849 Ig1_Contactin-1 First 99.4 2.8E-12 6E-17 95.7 10.8 85 81-174 2-91 (93)
124 cd05870 Ig5_NCAM-2 Fifth immun 99.4 2.9E-12 6.3E-17 97.5 11.2 91 80-176 2-98 (98)
125 cd04978 Ig4_L1-NrCAM_like Four 99.4 2E-12 4.3E-17 93.6 9.6 75 96-176 1-75 (76)
126 cd04969 Ig5_Contactin_like Fif 99.4 1.8E-12 3.8E-17 92.6 9.0 72 96-176 1-73 (73)
127 cd05876 Ig3_L1-CAM Third immun 99.4 1.3E-12 2.7E-17 92.5 8.0 71 99-177 1-71 (71)
128 cd05744 Ig_Myotilin_C_like Imm 99.4 1.8E-12 4E-17 92.5 8.6 70 99-176 1-75 (75)
129 cd04976 Ig2_VEGFR Second immun 99.4 2.1E-12 4.6E-17 91.1 8.7 70 99-177 1-70 (71)
130 PF07679 I-set: Immunoglobulin 99.4 2.9E-12 6.2E-17 96.5 9.9 88 81-176 1-90 (90)
131 cd05869 Ig5_NCAM-1 Fifth immun 99.4 3.9E-12 8.5E-17 96.5 10.7 91 81-176 3-97 (97)
132 cd05754 Ig3_Perlecan_like Thir 99.4 1.3E-12 2.9E-17 96.5 7.8 71 2-75 13-84 (85)
133 cd05749 Ig2_Tyro3_like Second 99.4 2.9E-12 6.4E-17 92.1 9.2 73 86-170 3-75 (81)
134 cd05848 Ig1_Contactin-5 First 99.4 4.8E-12 1E-16 94.9 10.6 82 81-170 2-87 (94)
135 cd07701 Ig1_Necl-3 First (N-te 99.4 1.8E-12 3.9E-17 97.1 8.1 75 2-77 9-95 (95)
136 cd05891 Ig_M-protein_C C-termi 99.4 4.8E-12 1E-16 94.6 10.3 84 86-176 6-92 (92)
137 cd05866 Ig1_NCAM-2 First immun 99.4 6.7E-12 1.4E-16 92.8 10.9 80 87-176 6-91 (92)
138 cd05857 Ig2_FGFR Second immuno 99.4 3.8E-12 8.2E-17 94.4 9.7 82 91-176 4-85 (85)
139 cd05729 Ig2_FGFR_like Second i 99.4 3.9E-12 8.3E-17 94.7 9.6 76 2-77 6-85 (85)
140 cd05850 Ig1_Contactin-2 First 99.4 1.1E-11 2.3E-16 93.1 11.9 86 81-174 2-92 (94)
141 cd05845 Ig2_L1-CAM_like Second 99.4 9.1E-13 2E-17 96.4 5.7 66 2-67 15-83 (95)
142 cd07693 Ig1_Robo First immunog 99.4 7.3E-12 1.6E-16 96.6 11.3 92 81-176 2-99 (100)
143 cd05732 Ig5_NCAM-1_like Fifth 99.4 5.6E-12 1.2E-16 96.0 10.2 85 88-176 8-96 (96)
144 cd05752 Ig1_FcgammaR_like Frst 99.4 2E-12 4.3E-17 92.4 7.1 56 2-65 12-68 (78)
145 cd04979 Ig_Semaphorin_C Immuno 99.4 3.5E-12 7.6E-17 95.2 8.7 75 2-78 8-87 (89)
146 cd05882 Ig1_Necl-1 First (N-te 99.4 4.1E-12 9E-17 94.6 8.6 74 2-76 9-94 (95)
147 cd05746 Ig4_Peroxidasin Fourth 99.4 3.3E-12 7.2E-17 89.8 7.7 67 99-174 1-68 (69)
148 cd05895 Ig_Pro_neuregulin-1 Im 99.4 4.1E-12 8.9E-17 91.6 8.2 67 8-74 1-75 (76)
149 cd05752 Ig1_FcgammaR_like Frst 99.4 4.5E-12 9.8E-17 90.6 8.3 74 85-175 4-77 (78)
150 cd05861 Ig1_PDGFR-alphabeta Fr 99.4 6.8E-12 1.5E-16 91.8 9.4 74 5-78 1-83 (84)
151 cd05724 Ig2_Robo Second immuno 99.3 1.2E-11 2.7E-16 92.0 11.0 81 87-175 2-85 (86)
152 cd05864 Ig2_VEGFR-2 Second imm 99.3 5.2E-12 1.1E-16 88.0 8.2 68 99-176 1-68 (70)
153 cd05726 Ig4_Robo Fhird immunog 99.3 1E-11 2.2E-16 92.8 10.3 83 96-180 1-85 (90)
154 cd05722 Ig1_Neogenin First imm 99.3 1.3E-11 2.8E-16 93.4 10.8 85 86-176 4-95 (95)
155 cd05898 Ig5_KIRREL3 Fifth immu 99.3 6.3E-12 1.4E-16 93.2 8.7 75 1-75 12-97 (98)
156 PF00041 fn3: Fibronectin type 99.3 6.7E-12 1.5E-16 93.5 9.0 84 496-583 2-85 (85)
157 cd05725 Ig3_Robo Third immunog 99.3 6.6E-12 1.4E-16 88.5 8.2 69 99-176 1-69 (69)
158 cd05871 Ig_Semaphorin_classIII 99.3 7.1E-12 1.5E-16 92.8 8.6 77 1-79 7-90 (91)
159 cd05748 Ig_Titin_like Immunogl 99.3 1.1E-11 2.3E-16 88.9 9.2 70 98-176 1-74 (74)
160 cd05764 Ig_2 Subgroup of the i 99.3 1.6E-11 3.4E-16 88.1 9.7 73 96-176 1-74 (74)
161 cd05758 Ig5_KIRREL3-like Fifth 99.3 2.1E-11 4.6E-16 92.7 10.8 87 81-174 2-97 (98)
162 cd05756 Ig1_IL1R_like First im 99.3 1E-11 2.2E-16 92.7 8.6 83 89-176 7-94 (94)
163 cd05731 Ig3_L1-CAM_like Third 99.3 8.5E-12 1.8E-16 88.9 7.9 71 99-177 1-71 (71)
164 cd05760 Ig2_PTK7 Second immuno 99.3 1.6E-11 3.5E-16 88.3 9.3 71 99-175 1-71 (77)
165 cd05738 Ig2_RPTP_IIa_LAR_like 99.3 1.2E-11 2.6E-16 88.3 8.5 72 99-177 1-74 (74)
166 cd05856 Ig2_FGFRL1-like Second 99.3 1E-11 2.2E-16 91.6 8.1 79 91-176 4-82 (82)
167 cd07702 Ig2_VEGFR-1 Second imm 99.3 1.5E-11 3.2E-16 85.7 8.2 69 99-175 1-69 (72)
168 smart00408 IGc2 Immunoglobulin 99.3 1.8E-11 3.9E-16 85.2 8.9 63 4-67 1-63 (63)
169 cd05763 Ig_1 Subgroup of the i 99.3 2E-11 4.3E-16 87.7 8.9 72 99-176 1-74 (75)
170 cd05855 Ig_TrkB_d5 Fifth domai 99.3 1.5E-11 3.3E-16 87.2 7.9 74 100-175 2-77 (79)
171 cd04974 Ig3_FGFR Third immunog 99.3 1.4E-11 3E-16 91.8 8.2 79 96-176 1-89 (90)
172 cd05873 Ig_Sema4D_like Immunog 99.3 5.3E-11 1.2E-15 86.1 10.4 69 88-165 3-71 (87)
173 cd04977 Ig1_NCAM-1_like First 99.3 5.5E-11 1.2E-15 88.8 10.8 81 87-176 6-92 (92)
174 cd05743 Ig_Perlecan_D2_like Im 99.3 2E-11 4.3E-16 88.3 8.1 72 96-176 1-76 (78)
175 cd05858 Ig3_FGFR-2 Third immun 99.3 3.2E-11 6.9E-16 90.0 8.6 79 96-176 1-89 (90)
176 cd04971 Ig_TrKABC_d5 Fifth dom 99.3 3.6E-11 7.8E-16 86.8 8.3 73 100-175 2-79 (81)
177 cd05754 Ig3_Perlecan_like Thir 99.2 4.2E-11 9.1E-16 88.5 8.9 78 86-174 6-84 (85)
178 PHA02826 IL-1 receptor-like pr 99.2 3.4E-10 7.5E-15 99.4 15.8 164 88-267 29-210 (227)
179 KOG3515|consensus 99.2 8.4E-10 1.8E-14 110.0 19.7 391 3-437 313-733 (741)
180 cd05753 Ig2_FcgammaR_like Seco 99.2 4.2E-11 9.1E-16 87.2 7.7 65 2-71 11-76 (83)
181 cd05765 Ig_3 Subgroup of the i 99.2 7.8E-11 1.7E-15 86.5 9.0 77 96-176 1-81 (81)
182 cd05742 Ig1_VEGFR_like First i 99.2 7.4E-11 1.6E-15 86.9 8.6 81 96-176 1-83 (84)
183 cd05862 Ig1_VEGFR First immuno 99.2 6.5E-11 1.4E-15 86.9 7.7 74 5-78 1-85 (86)
184 cd05897 Ig2_IL1R2_like Second 99.2 7.7E-11 1.7E-15 86.7 8.0 68 2-69 7-81 (95)
185 cd05872 Ig_Sema4B_like Immunog 99.2 8.7E-11 1.9E-15 84.2 7.8 67 2-71 8-74 (85)
186 cd05717 Ig1_Necl-1-3_like Firs 99.2 1.1E-10 2.4E-15 88.3 8.7 75 2-77 9-95 (95)
187 cd05736 Ig2_Follistatin_like S 99.2 1.7E-10 3.7E-15 83.2 9.0 72 99-177 1-74 (76)
188 cd04967 Ig1_Contactin First Ig 99.2 3.3E-10 7.1E-15 84.9 10.5 82 81-170 2-87 (91)
189 PF00041 fn3: Fibronectin type 99.2 2.4E-10 5.2E-15 85.0 9.7 84 393-481 2-85 (85)
190 cd05757 Ig2_IL1R_like Second i 99.2 2.9E-10 6.3E-15 84.1 9.7 79 90-175 4-85 (92)
191 cd05882 Ig1_Necl-1 First (N-te 99.2 2.1E-10 4.5E-15 85.5 8.9 85 88-175 4-94 (95)
192 KOG4258|consensus 99.2 1.3E-09 2.8E-14 107.4 16.3 291 186-487 494-921 (1025)
193 cd05898 Ig5_KIRREL3 Fifth immu 99.1 5.6E-10 1.2E-14 82.9 10.5 82 87-174 7-97 (98)
194 cd05750 Ig_Pro_neuregulin Immu 99.1 1.3E-10 2.8E-15 83.8 7.1 71 99-173 1-74 (75)
195 cd05862 Ig1_VEGFR First immuno 99.1 3.5E-10 7.6E-15 83.0 9.0 83 96-178 1-86 (86)
196 cd05734 Ig7_DSCAM Seventh immu 99.1 2.7E-10 5.8E-15 82.7 8.1 76 99-176 1-79 (79)
197 cd05733 Ig6_L1-CAM_like Sixth 99.1 2.9E-10 6.2E-15 81.8 8.1 65 99-170 1-71 (77)
198 KOG3515|consensus 99.1 1.2E-08 2.5E-13 102.1 22.0 174 3-180 219-399 (741)
199 cd04979 Ig_Semaphorin_C Immuno 99.1 5.8E-10 1.2E-14 83.2 9.8 85 87-177 2-87 (89)
200 cd05874 Ig6_NrCAM Sixth immuno 99.1 4.9E-10 1.1E-14 80.3 8.7 67 99-170 1-71 (77)
201 PF00047 ig: Immunoglobulin do 99.1 1.2E-10 2.7E-15 80.8 5.4 58 5-62 1-64 (64)
202 cd07690 Ig1_CD4 First immunogl 99.1 2.4E-10 5.2E-15 84.4 6.9 67 2-68 4-90 (94)
203 cd05875 Ig6_hNeurofascin_like 99.1 8.4E-10 1.8E-14 79.1 9.2 65 99-170 1-71 (77)
204 smart00409 IG Immunoglobulin. 99.1 1E-09 2.3E-14 81.9 10.1 76 2-77 6-85 (86)
205 smart00410 IG_like Immunoglobu 99.1 1E-09 2.3E-14 81.9 10.1 76 2-77 6-85 (86)
206 cd07701 Ig1_Necl-3 First (N-te 99.1 1.2E-09 2.5E-14 81.9 9.9 87 87-176 3-95 (95)
207 cd05895 Ig_Pro_neuregulin-1 Im 99.1 6.8E-10 1.5E-14 79.9 8.2 71 99-173 1-75 (76)
208 cd05753 Ig2_FcgammaR_like Seco 99.1 9.5E-10 2.1E-14 80.1 8.2 67 90-168 8-74 (83)
209 cd05885 Ig2_Necl-4 Second immu 99.1 8.9E-10 1.9E-14 77.8 7.6 63 7-69 1-69 (80)
210 cd05774 Ig_CEACAM_D1 First imm 99.0 1.5E-09 3.2E-14 82.2 8.8 67 2-68 10-95 (105)
211 cd05729 Ig2_FGFR_like Second i 99.0 2E-09 4.2E-14 80.0 9.3 82 91-176 4-85 (85)
212 cd05896 Ig1_IL1RAPL-1_like Fir 99.0 1.3E-09 2.9E-14 80.0 7.7 76 2-77 12-104 (104)
213 PF13895 Ig_2: Immunoglobulin 99.0 7.1E-10 1.5E-14 81.4 6.2 69 2-77 11-80 (80)
214 cd05861 Ig1_PDGFR-alphabeta Fr 99.0 2.6E-09 5.6E-14 78.2 8.4 77 96-177 1-83 (84)
215 cd05881 Ig1_Necl-2 First (N-te 99.0 4E-09 8.8E-14 77.8 9.4 64 2-65 9-84 (95)
216 cd05871 Ig_Semaphorin_classIII 98.9 1E-08 2.2E-13 76.0 10.0 83 90-178 5-90 (91)
217 cd05845 Ig2_L1-CAM_like Second 98.9 3.3E-09 7.2E-14 77.8 7.2 79 81-167 3-84 (95)
218 cd05860 Ig4_SCFR Fourth immuno 98.9 5.1E-09 1.1E-13 76.8 8.1 77 2-78 15-100 (101)
219 cd05717 Ig1_Necl-1-3_like Firs 98.9 1.2E-08 2.5E-13 77.2 10.3 86 88-176 4-95 (95)
220 cd05727 Ig2_Contactin-2-like S 98.9 7.2E-09 1.6E-13 76.2 7.8 78 85-168 7-86 (96)
221 cd05741 Ig_CEACAM_D1_like Firs 98.9 9.2E-09 2E-13 77.5 8.2 64 5-68 1-82 (92)
222 smart00408 IGc2 Immunoglobulin 98.9 1.5E-08 3.2E-13 70.3 8.4 63 95-166 1-63 (63)
223 cd05759 Ig2_KIRREL3-like Secon 98.9 1.6E-08 3.6E-13 73.9 8.6 64 7-70 1-73 (82)
224 cd05896 Ig1_IL1RAPL-1_like Fir 98.9 2.5E-08 5.5E-13 73.4 9.2 86 90-175 9-103 (104)
225 cd07690 Ig1_CD4 First immunogl 98.8 9E-09 1.9E-13 76.1 6.8 76 91-168 2-91 (94)
226 cd05897 Ig2_IL1R2_like Second 98.8 2.7E-08 6E-13 73.3 8.8 72 91-168 5-81 (95)
227 PHA03376 BARF1; Provisional 98.8 7.7E-08 1.7E-12 77.3 10.8 117 2-121 23-162 (221)
228 cd05775 Ig_SLAM-CD84_like_N N- 98.8 2.6E-08 5.5E-13 75.2 7.7 76 2-77 1-96 (97)
229 cd05714 Ig_CSPGs_LP Immunoglob 98.8 5.6E-08 1.2E-12 75.2 9.7 76 4-79 1-104 (106)
230 KOG4802|consensus 98.8 3.9E-07 8.5E-12 82.3 15.9 140 449-592 206-353 (516)
231 cd05872 Ig_Sema4B_like Immunog 98.8 7.3E-08 1.6E-12 69.3 9.0 71 89-170 4-74 (85)
232 cd05877 Ig_LP_like Immunoglobu 98.7 6.7E-08 1.5E-12 74.9 9.0 75 4-78 1-103 (106)
233 cd05751 Ig1_LILRB1_like First 98.7 3.3E-08 7.1E-13 73.7 6.5 64 2-66 13-76 (91)
234 PF13895 Ig_2: Immunoglobulin 98.7 9.4E-08 2E-12 69.9 8.8 71 91-176 9-80 (80)
235 cd05883 Ig2_Necl-2 Second immu 98.7 1.6E-07 3.6E-12 66.5 9.3 72 7-78 1-80 (82)
236 smart00409 IG Immunoglobulin. 98.7 3.4E-07 7.5E-12 68.0 11.8 79 89-176 2-85 (86)
237 smart00410 IG_like Immunoglobu 98.7 3.4E-07 7.5E-12 68.0 11.8 79 89-176 2-85 (86)
238 cd05713 Ig_MOG_like Immunoglob 98.7 9.1E-08 2E-12 73.2 8.6 73 5-77 1-99 (100)
239 cd05860 Ig4_SCFR Fourth immuno 98.7 2.5E-07 5.4E-12 68.0 9.9 87 89-177 11-100 (101)
240 cd05879 Ig_P0 Immunoglobulin ( 98.7 1.3E-07 2.8E-12 73.2 8.9 68 2-69 10-106 (116)
241 PF00047 ig: Immunoglobulin do 98.7 3.2E-08 6.9E-13 68.6 4.8 59 96-161 1-64 (64)
242 cd04983 IgV_TCR_alpha_like Imm 98.7 6.7E-08 1.4E-12 75.5 7.2 66 2-67 10-94 (109)
243 KOG4802|consensus 98.6 8.3E-07 1.8E-11 80.3 14.0 209 152-376 118-341 (516)
244 cd05900 Ig_Aggrecan Immunoglob 98.6 3E-07 6.4E-12 70.6 9.4 75 4-78 1-109 (112)
245 cd00099 IgV Immunoglobulin var 98.6 9.1E-08 2E-12 74.3 6.7 66 2-67 3-91 (105)
246 cd05885 Ig2_Necl-4 Second immu 98.6 3.6E-07 7.9E-12 64.6 8.7 69 98-168 1-69 (80)
247 PF13927 Ig_3: Immunoglobulin 98.6 2.7E-08 5.8E-13 71.8 2.9 59 6-64 16-75 (75)
248 cd05878 Ig_Aggrecan_like Immun 98.6 4E-07 8.8E-12 70.4 9.3 75 4-78 1-107 (110)
249 cd05718 Ig1_PVR_like First imm 98.6 2.6E-07 5.7E-12 70.5 8.3 72 6-77 1-97 (98)
250 cd05899 IgV_TCR_beta Immunoglo 98.6 2.4E-07 5.2E-12 72.2 7.4 64 2-66 10-95 (110)
251 cd00063 FN3 Fibronectin type 3 98.6 1.1E-06 2.5E-11 66.3 11.0 83 496-584 3-87 (93)
252 cd04980 IgV_L_kappa Immunoglob 98.6 2.6E-07 5.6E-12 71.5 7.4 64 2-65 12-93 (106)
253 cd04984 IgV_L_lambda Immunoglo 98.5 6E-07 1.3E-11 68.2 8.8 64 2-65 3-85 (98)
254 cd05761 Ig2_Necl-1-4_like Seco 98.5 6.5E-07 1.4E-11 65.1 8.3 62 7-68 1-70 (82)
255 cd05879 Ig_P0 Immunoglobulin ( 98.5 1.5E-06 3.2E-11 67.4 10.6 79 88-168 5-106 (116)
256 cd05877 Ig_LP_like Immunoglobu 98.5 8.8E-07 1.9E-11 68.6 9.3 84 95-178 1-104 (106)
257 cd05774 Ig_CEACAM_D1 First imm 98.5 1.8E-06 4E-11 65.4 10.2 85 89-175 6-104 (105)
258 PF10179 DUF2369: Uncharacteri 98.5 7.9E-05 1.7E-09 67.1 22.0 124 452-582 128-288 (300)
259 cd05755 Ig2_ICAM-1_like Second 98.5 5.5E-07 1.2E-11 66.8 6.9 68 1-68 12-87 (100)
260 cd05714 Ig_CSPGs_LP Immunoglob 98.5 1.2E-06 2.6E-11 67.8 9.2 84 95-178 1-104 (106)
261 cd05846 Ig1_MRC-OX-2_like Firs 98.5 1.3E-06 2.9E-11 66.1 9.1 73 5-77 1-96 (97)
262 cd05881 Ig1_Necl-2 First (N-te 98.5 1.9E-06 4E-11 63.7 9.5 74 88-163 4-83 (95)
263 cd05751 Ig1_LILRB1_like First 98.5 6.1E-07 1.3E-11 66.8 6.8 66 90-164 10-75 (91)
264 cd05886 Ig1_Nectin-1_like Firs 98.4 1.9E-06 4.2E-11 64.6 9.3 72 6-77 1-98 (99)
265 cd00063 FN3 Fibronectin type 3 98.4 2.7E-06 5.8E-11 64.2 10.4 88 393-485 3-90 (93)
266 cd05887 Ig1_Nectin-3_like Firs 98.4 2.4E-06 5.2E-11 63.3 9.4 72 6-77 1-95 (96)
267 cd04982 IgV_TCR_gamma Immunogl 98.4 5.9E-07 1.3E-11 70.9 6.6 64 2-65 10-99 (116)
268 cd00098 IgC Immunoglobulin Con 98.4 6.5E-07 1.4E-11 67.9 6.2 64 4-67 12-86 (95)
269 cd05888 Ig1_Nectin-4_like Frst 98.4 1.6E-06 3.5E-11 65.8 7.9 72 6-77 1-99 (100)
270 cd05713 Ig_MOG_like Immunoglob 98.4 4.1E-06 8.9E-11 64.0 10.3 81 96-176 1-99 (100)
271 cd05880 Ig_EVA1 Immunoglobulin 98.4 1.3E-06 2.7E-11 68.3 7.4 67 2-68 10-104 (115)
272 cd05878 Ig_Aggrecan_like Immun 98.4 4.3E-06 9.2E-11 64.7 10.1 84 95-178 1-108 (110)
273 cd05902 Ig_Neurocan Immunoglob 98.4 2.7E-06 5.8E-11 65.1 8.4 74 5-78 2-107 (110)
274 cd05759 Ig2_KIRREL3-like Secon 98.4 2.3E-06 4.9E-11 62.5 7.8 69 98-168 1-72 (82)
275 PF13927 Ig_3: Immunoglobulin 98.4 6.8E-07 1.5E-11 64.3 5.0 68 88-163 8-75 (75)
276 cd05901 Ig_Versican Immunoglob 98.3 6.2E-06 1.3E-10 63.1 10.1 74 5-78 2-114 (117)
277 cd07705 Ig2_Necl-1 Second immu 98.3 4.3E-06 9.3E-11 60.7 8.9 62 7-68 1-71 (83)
278 smart00060 FN3 Fibronectin typ 98.3 8.4E-06 1.8E-10 59.7 10.7 80 496-579 3-82 (83)
279 cd05900 Ig_Aggrecan Immunoglob 98.3 8E-06 1.7E-10 62.8 10.5 84 95-178 1-110 (112)
280 cd05755 Ig2_ICAM-1_like Second 98.3 3.8E-06 8.1E-11 62.4 8.3 80 87-167 7-87 (100)
281 cd04983 IgV_TCR_alpha_like Imm 98.3 2.8E-06 6.1E-11 66.3 8.2 78 86-165 3-93 (109)
282 cd05884 Ig2_Necl-3 Second immu 98.3 3.7E-06 8.1E-11 60.9 7.7 61 8-68 2-71 (83)
283 cd05715 Ig_P0-like Immunoglobu 98.3 3.3E-06 7.2E-11 66.4 8.1 67 2-68 10-105 (116)
284 PHA02987 Ig domain OX-2-like p 98.3 4.5E-06 9.8E-11 68.1 8.8 78 2-79 27-123 (189)
285 COG3401 Fibronectin type 3 dom 98.3 0.00017 3.6E-09 64.7 18.2 250 300-581 82-333 (343)
286 cd05711 Ig_FcalphaRI Immunoglo 98.2 3.6E-06 7.7E-11 63.0 6.8 62 2-64 12-76 (94)
287 cd05899 IgV_TCR_beta Immunoglo 98.2 4.1E-06 8.8E-11 65.3 7.1 77 86-165 3-95 (110)
288 cd05716 Ig_pIgR Immunoglobulin 98.2 4.1E-06 9E-11 63.7 7.0 65 2-66 4-87 (98)
289 cd05741 Ig_CEACAM_D1_like Firs 98.2 5.9E-06 1.3E-10 62.1 7.6 78 96-175 1-91 (92)
290 PF07686 V-set: Immunoglobulin 98.2 2.3E-06 5E-11 67.7 5.5 64 2-65 13-101 (114)
291 cd05880 Ig_EVA1 Immunoglobulin 98.2 1.8E-05 3.8E-10 61.9 10.2 81 87-167 4-104 (115)
292 cd05887 Ig1_Nectin-3_like Firs 98.2 1.8E-05 4E-10 58.7 9.0 79 97-176 1-95 (96)
293 cd05718 Ig1_PVR_like First imm 98.2 1.2E-05 2.6E-10 61.3 8.4 80 97-176 1-97 (98)
294 cd05775 Ig_SLAM-CD84_like_N N- 98.2 9E-06 2E-10 61.3 7.5 82 94-176 2-96 (97)
295 cd05720 Ig_CD8_alpha Immunoglo 98.2 7.4E-06 1.6E-10 62.7 7.0 63 2-64 3-90 (104)
296 cd07700 IgV_CD8_beta Immunoglo 98.2 7.5E-06 1.6E-10 63.2 7.1 64 2-65 3-94 (107)
297 cd05715 Ig_P0-like Immunoglobu 98.2 2.1E-05 4.6E-10 61.8 9.7 80 88-167 5-105 (116)
298 cd05846 Ig1_MRC-OX-2_like Firs 98.2 1.3E-05 2.9E-10 60.6 8.2 80 96-176 1-96 (97)
299 cd07694 Ig2_CD4 Second immunog 98.1 1.6E-05 3.5E-10 56.2 7.8 73 2-77 11-85 (88)
300 cd05886 Ig1_Nectin-1_like Firs 98.1 5.2E-05 1.1E-09 56.9 11.0 81 97-177 1-99 (99)
301 cd07694 Ig2_CD4 Second immunog 98.1 3E-05 6.5E-10 54.8 8.7 79 90-177 8-86 (88)
302 cd04980 IgV_L_kappa Immunoglob 98.1 1.7E-05 3.8E-10 61.2 8.5 79 85-164 4-93 (106)
303 cd07706 IgV_TCR_delta Immunogl 98.1 1.2E-05 2.6E-10 63.4 7.6 64 2-65 11-94 (116)
304 cd05889 Ig1_DNAM-1_like First 98.1 3.5E-05 7.7E-10 57.2 9.3 65 6-70 1-88 (96)
305 PF10179 DUF2369: Uncharacteri 98.1 0.0015 3.3E-08 59.0 21.1 133 348-489 127-297 (300)
306 cd00098 IgC Immunoglobulin Con 98.1 1.1E-05 2.4E-10 61.0 6.5 71 94-167 11-87 (95)
307 KOG3632|consensus 98.1 2.7E-05 5.8E-10 78.9 10.4 265 290-584 580-860 (1335)
308 cd05711 Ig_FcalphaRI Immunoglo 98.1 2.6E-05 5.7E-10 58.3 8.1 69 88-162 7-75 (94)
309 cd05888 Ig1_Nectin-4_like Frst 98.0 8.5E-05 1.8E-09 56.4 10.8 79 98-176 2-99 (100)
310 PF07686 V-set: Immunoglobulin 98.0 2.3E-05 4.9E-10 61.9 8.0 89 87-176 7-114 (114)
311 cd00096 Ig Immunoglobulin doma 98.0 2.1E-05 4.5E-10 55.9 6.8 59 8-66 1-66 (74)
312 cd05901 Ig_Versican Immunoglob 98.0 5.5E-05 1.2E-09 57.9 9.1 83 96-178 2-115 (117)
313 cd07692 Ig_CD3_epsilon Immunog 98.0 1.3E-05 2.9E-10 52.9 4.9 52 3-65 5-56 (65)
314 cd05902 Ig_Neurocan Immunoglob 98.0 4.8E-05 1E-09 58.3 8.7 83 96-178 2-108 (110)
315 PHA02987 Ig domain OX-2-like p 98.0 8.4E-05 1.8E-09 60.9 10.1 89 90-180 24-125 (189)
316 cd05883 Ig2_Necl-2 Second immu 98.0 7E-05 1.5E-09 53.3 8.4 77 99-176 2-79 (82)
317 cd05772 IgC_SIRP Signal-regula 98.0 6.6E-05 1.4E-09 57.7 8.9 88 77-165 2-92 (111)
318 cd04981 IgV_H Immunoglobulin ( 98.0 3.2E-05 6.9E-10 60.6 7.3 63 2-64 9-97 (117)
319 cd05712 Ig_Siglec_N Immunoglob 98.0 5E-05 1.1E-09 60.0 8.3 64 2-65 11-102 (119)
320 cd00099 IgV Immunoglobulin var 97.9 2.5E-05 5.5E-10 60.4 5.9 74 92-166 2-91 (105)
321 smart00060 FN3 Fibronectin typ 97.9 0.00019 4E-09 52.3 10.4 79 393-477 3-82 (83)
322 PHA03376 BARF1; Provisional 97.9 0.00016 3.5E-09 58.8 10.1 76 90-166 20-111 (221)
323 smart00407 IGc1 Immunoglobulin 97.9 9E-05 2E-09 52.7 8.0 59 7-65 1-70 (75)
324 cd04982 IgV_TCR_gamma Immunogl 97.9 3E-05 6.6E-10 61.1 5.8 78 86-163 3-98 (116)
325 KOG4367|consensus 97.8 2.1E-05 4.4E-10 71.8 4.6 81 506-593 451-531 (699)
326 KOG4228|consensus 97.8 0.0003 6.6E-09 73.4 12.4 320 156-583 1-320 (1087)
327 cd05771 IgC_Tapasin_R Tapasin- 97.8 0.0007 1.5E-08 55.3 12.4 40 143-182 2-41 (139)
328 cd07706 IgV_TCR_delta Immunogl 97.8 6.7E-05 1.5E-09 59.1 6.1 77 86-163 4-93 (116)
329 cd07691 Ig_CD3_gamma_delta Imm 97.7 0.0001 2.3E-09 49.0 5.6 59 6-79 7-65 (69)
330 cd07698 IgC_MHC_I_alpha3 Class 97.7 0.00016 3.5E-09 54.0 7.2 66 96-165 14-83 (93)
331 cd05889 Ig1_DNAM-1_like First 97.7 0.00038 8.1E-09 51.8 8.9 78 97-175 1-94 (96)
332 KOG3632|consensus 97.7 0.00043 9.3E-09 70.6 11.7 262 182-479 580-857 (1335)
333 KOG0613|consensus 97.7 0.002 4.4E-08 68.6 17.1 361 91-478 50-419 (1205)
334 COG3401 Fibronectin type 3 dom 97.7 0.0026 5.5E-08 57.4 15.3 220 347-587 29-249 (343)
335 cd05884 Ig2_Necl-3 Second immu 97.7 0.00023 5E-09 51.5 7.2 68 99-167 2-71 (83)
336 cd05766 IgC_MHC_II_beta Class 97.7 0.00028 6E-09 52.6 7.8 61 3-66 12-83 (94)
337 cd04984 IgV_L_lambda Immunoglo 97.6 0.00011 2.4E-09 55.8 5.4 73 92-164 2-85 (98)
338 cd05712 Ig_Siglec_N Immunoglob 97.6 0.0004 8.6E-09 54.8 8.6 79 86-164 4-102 (119)
339 cd07699 IgC_L Immunoglobulin C 97.6 0.00014 3E-09 55.0 5.6 82 81-165 2-89 (100)
340 cd05770 IgC_beta2m Class I maj 97.6 0.00035 7.5E-09 51.6 7.5 62 3-65 13-82 (93)
341 cd05772 IgC_SIRP Signal-regula 97.6 0.00064 1.4E-08 52.3 9.1 63 3-66 19-92 (111)
342 cd05761 Ig2_Necl-1-4_like Seco 97.6 0.00048 1E-08 50.0 8.0 68 98-167 1-70 (82)
343 PF08205 C2-set_2: CD80-like C 97.6 0.00016 3.4E-09 53.8 5.6 65 4-68 13-86 (89)
344 cd05768 IgC_CH4 CH4 domain (fo 97.6 0.00019 4.1E-09 54.4 5.9 40 87-126 7-46 (102)
345 smart00406 IGv Immunoglobulin 97.6 0.00015 3.2E-09 52.9 5.1 56 7-62 1-81 (81)
346 cd07699 IgC_L Immunoglobulin C 97.6 0.00029 6.4E-09 53.3 6.7 63 4-66 16-89 (100)
347 cd05847 IgC_CH2_IgE CH2 domain 97.6 0.00032 6.9E-09 52.1 6.7 71 94-167 12-88 (94)
348 TIGR00864 PCC polycystin catio 97.6 0.34 7.5E-06 57.4 44.1 116 52-179 1564-1696(2740)
349 cd05847 IgC_CH2_IgE CH2 domain 97.5 0.00037 8.1E-09 51.8 7.0 64 5-68 14-88 (94)
350 cd07705 Ig2_Necl-1 Second immu 97.5 0.00076 1.6E-08 48.9 8.4 68 99-167 2-71 (83)
351 cd05716 Ig_pIgR Immunoglobulin 97.5 0.00043 9.4E-09 52.5 7.5 74 91-165 2-87 (98)
352 KOG4152|consensus 97.5 0.00046 1E-08 65.2 8.8 125 456-583 651-789 (830)
353 cd07698 IgC_MHC_I_alpha3 Class 97.5 0.00042 9E-09 51.8 7.0 62 5-66 14-83 (93)
354 cd05768 IgC_CH4 CH4 domain (fo 97.5 0.00025 5.5E-09 53.7 5.7 62 4-65 15-90 (102)
355 cd05767 IgC_MHC_II_alpha Class 97.5 0.0006 1.3E-08 50.6 7.3 59 4-65 14-83 (94)
356 cd07700 IgV_CD8_beta Immunoglo 97.5 0.00048 1E-08 53.2 7.1 71 92-163 2-93 (107)
357 smart00407 IGc1 Immunoglobulin 97.4 0.00069 1.5E-08 48.2 7.0 65 98-165 1-71 (75)
358 cd05766 IgC_MHC_II_beta Class 97.4 0.0008 1.7E-08 50.1 7.2 69 94-165 12-83 (94)
359 cd05769 IgC_TCR_beta T cell re 97.4 0.00075 1.6E-08 52.1 7.1 81 86-168 8-95 (115)
360 cd07697 IgC_TCR_gamma T cell r 97.4 0.00044 9.5E-09 51.4 5.6 40 87-126 7-46 (96)
361 PF07654 C1-set: Immunoglobuli 97.4 0.0006 1.3E-08 49.7 6.2 61 4-67 7-78 (83)
362 cd00096 Ig Immunoglobulin doma 97.4 0.00083 1.8E-08 47.3 6.8 66 99-166 1-67 (74)
363 KOG4367|consensus 97.3 0.00022 4.8E-09 65.3 4.1 83 401-490 449-531 (699)
364 cd04981 IgV_H Immunoglobulin ( 97.3 0.001 2.2E-08 52.2 7.2 77 87-163 3-97 (117)
365 KOG4152|consensus 97.3 0.0017 3.6E-08 61.6 9.6 124 353-481 651-789 (830)
366 KOG0613|consensus 97.3 0.0082 1.8E-07 64.3 15.2 280 289-584 141-423 (1205)
367 cd07692 Ig_CD3_epsilon Immunog 97.3 0.0011 2.4E-08 44.0 5.7 52 94-164 5-56 (65)
368 PF09294 Interfer-bind: Interf 97.3 0.0016 3.5E-08 50.2 7.9 86 393-484 5-101 (106)
369 cd07696 IgC_CH3 CH3 domain (th 97.3 0.0018 3.9E-08 48.3 7.7 63 4-66 13-86 (96)
370 PF09294 Interfer-bind: Interf 97.2 0.002 4.3E-08 49.7 8.0 90 495-591 4-105 (106)
371 cd05720 Ig_CD8_alpha Immunoglo 97.2 0.00069 1.5E-08 51.9 5.2 70 92-163 2-90 (104)
372 cd05721 IgV_CTLA-4 Immunoglobu 97.2 0.0015 3.4E-08 49.4 6.7 61 2-62 10-93 (115)
373 cd05769 IgC_TCR_beta T cell re 97.2 0.002 4.3E-08 49.8 7.4 66 4-69 17-95 (115)
374 KOG1480|consensus 97.2 0.0002 4.2E-09 71.2 2.1 78 2-79 141-220 (909)
375 cd07696 IgC_CH3 CH3 domain (th 97.2 0.0016 3.5E-08 48.6 6.5 38 87-124 5-43 (96)
376 cd04986 IgC_CH2 CH2 domain (se 97.1 0.0011 2.4E-08 49.3 5.4 43 81-123 4-47 (99)
377 cd05770 IgC_beta2m Class I maj 97.1 0.0014 3E-08 48.4 5.9 67 94-164 13-82 (93)
378 cd05767 IgC_MHC_II_alpha Class 97.1 0.002 4.4E-08 47.7 6.4 66 95-164 14-83 (94)
379 cd05719 Ig2_PVR_like Second im 97.1 0.0025 5.3E-08 47.5 6.7 62 6-68 16-84 (95)
380 PHA02914 Immunoglobulin-like d 97.1 0.059 1.3E-06 49.8 16.4 124 91-230 274-419 (500)
381 cd07697 IgC_TCR_gamma T cell r 97.0 0.0025 5.4E-08 47.4 6.6 59 5-65 16-84 (96)
382 PF07654 C1-set: Immunoglobuli 97.0 0.0012 2.6E-08 48.1 4.5 66 95-166 7-78 (83)
383 KOG1480|consensus 96.9 0.00025 5.3E-09 70.5 0.6 158 1-168 35-209 (909)
384 smart00406 IGv Immunoglobulin 96.9 0.0012 2.7E-08 47.9 3.9 63 98-160 1-80 (81)
385 cd07691 Ig_CD3_gamma_delta Imm 96.9 0.0023 5.1E-08 42.7 4.7 51 94-163 4-54 (69)
386 PHA03271 envelope glycoprotein 96.9 0.11 2.3E-06 48.5 16.7 81 44-127 208-292 (490)
387 cd07689 Ig2_VCAM-1 Second immu 96.9 0.0065 1.4E-07 44.5 7.3 72 93-165 12-86 (99)
388 cd04985 IgC_CH1 CH1 domain (fi 96.9 0.0034 7.4E-08 46.7 6.0 42 81-123 2-43 (95)
389 PF08204 V-set_CD47: CD47 immu 96.9 0.0017 3.6E-08 50.4 4.3 76 1-77 23-119 (130)
390 PHA03273 envelope glycoprotein 96.8 0.12 2.6E-06 49.1 16.9 154 2-163 247-421 (486)
391 cd07704 Ig2_Nectin-3-4_like Se 96.8 0.0043 9.4E-08 45.8 6.1 65 2-67 13-85 (97)
392 PHA03273 envelope glycoprotein 96.8 0.028 6E-07 53.2 12.6 78 45-125 200-280 (486)
393 PF08205 C2-set_2: CD80-like C 96.8 0.0043 9.4E-08 46.0 6.1 71 96-168 14-87 (89)
394 PF07354 Sp38: Zona-pellucida- 96.8 0.0019 4.1E-08 56.0 4.6 48 18-65 11-59 (271)
395 PHA03269 envelope glycoprotein 96.8 0.034 7.4E-07 52.8 12.8 80 44-126 290-373 (566)
396 PHA03270 envelope glycoprotein 96.8 0.055 1.2E-06 50.8 13.9 79 45-126 184-265 (466)
397 cd07703 Ig2_Nectin-2_like Seco 96.8 0.0061 1.3E-07 45.2 6.6 62 6-68 16-84 (95)
398 PF01108 Tissue_fac: Tissue fa 96.7 0.01 2.2E-07 45.6 8.0 81 289-375 23-105 (107)
399 TIGR00864 PCC polycystin catio 96.7 2.2 4.7E-05 51.2 51.0 160 2-180 1879-2042(2740)
400 PHA03271 envelope glycoprotein 96.7 0.15 3.3E-06 47.6 16.1 156 2-163 257-430 (490)
401 cd04985 IgC_CH1 CH1 domain (fi 96.6 0.0068 1.5E-07 45.1 6.1 60 5-65 16-86 (95)
402 KOG4597|consensus 96.6 0.0022 4.8E-08 60.1 4.2 79 1-79 207-293 (560)
403 cd07689 Ig2_VCAM-1 Second immu 96.6 0.0086 1.9E-07 43.9 6.2 65 2-67 12-87 (99)
404 cd05721 IgV_CTLA-4 Immunoglobu 96.6 0.01 2.2E-07 45.0 6.8 74 88-161 5-93 (115)
405 PF08204 V-set_CD47: CD47 immu 96.5 0.0045 9.7E-08 48.1 4.6 83 94-177 25-120 (130)
406 PF01108 Tissue_fac: Tissue fa 96.5 0.013 2.8E-07 45.1 7.3 82 495-581 23-106 (107)
407 KOG4806|consensus 96.5 0.35 7.6E-06 44.1 16.7 123 454-583 286-439 (454)
408 PHA02633 hypothetical protein; 96.5 0.0084 1.8E-07 39.0 5.0 39 42-80 17-55 (63)
409 PHA03270 envelope glycoprotein 96.4 0.17 3.7E-06 47.7 14.5 115 2-126 231-363 (466)
410 PF09067 EpoR_lig-bind: Erythr 96.1 0.061 1.3E-06 40.6 8.5 84 287-374 7-95 (104)
411 KOG4228|consensus 96.1 0.022 4.7E-07 60.3 8.2 224 293-591 30-253 (1087)
412 PHA02633 hypothetical protein; 96.1 0.02 4.3E-07 37.3 4.9 39 140-178 16-54 (63)
413 cd04986 IgC_CH2 CH2 domain (se 96.0 0.017 3.7E-07 43.0 5.3 62 4-66 18-89 (99)
414 PHA03269 envelope glycoprotein 95.8 0.21 4.6E-06 47.7 12.5 151 2-163 339-512 (566)
415 PF02124 Marek_A: Marek's dise 95.8 1.1 2.5E-05 38.4 17.0 137 21-163 8-159 (211)
416 PHA02914 Immunoglobulin-like d 95.7 0.54 1.2E-05 43.8 14.1 116 3-127 277-424 (500)
417 PHA03042 CD47-like protein; Pr 95.4 0.051 1.1E-06 47.6 6.4 71 3-77 29-104 (286)
418 PF06328 Lep_receptor_Ig: Ig-l 95.2 0.078 1.7E-06 38.7 6.1 60 2-62 15-81 (89)
419 PHA02982 hypothetical protein; 95.0 0.48 1E-05 39.8 10.7 115 3-126 37-176 (251)
420 PF09067 EpoR_lig-bind: Erythr 94.9 0.12 2.7E-06 39.0 6.5 84 493-579 7-95 (104)
421 PHA02982 hypothetical protein; 94.9 0.4 8.8E-06 40.2 9.9 123 90-229 33-171 (251)
422 PF03921 ICAM_N: Intercellular 94.7 0.38 8.2E-06 35.0 8.3 80 87-181 9-90 (91)
423 PF11465 Receptor_2B4: Natural 94.7 0.15 3.2E-06 37.8 6.2 36 42-77 70-106 (108)
424 PHA03042 CD47-like protein; Pr 94.3 0.26 5.6E-06 43.4 8.0 71 95-175 30-103 (286)
425 PHA03282 envelope glycoprotein 94.3 2.5 5.5E-05 40.6 14.7 28 41-68 122-149 (540)
426 cd05719 Ig2_PVR_like Second im 94.2 0.19 4.1E-06 37.5 6.1 69 96-167 15-84 (95)
427 cd07704 Ig2_Nectin-3-4_like Se 94.0 0.39 8.6E-06 35.6 7.4 74 89-165 9-84 (97)
428 PF11465 Receptor_2B4: Natural 93.9 0.51 1.1E-05 35.1 7.6 68 99-168 28-97 (108)
429 KOG1026|consensus 93.8 0.14 3E-06 53.0 6.2 157 2-181 204-367 (774)
430 KOG4806|consensus 93.8 1.5 3.2E-05 40.3 11.7 124 356-488 291-446 (454)
431 COG4733 Phage-related protein, 93.7 0.91 2E-05 47.0 11.5 130 447-583 655-786 (952)
432 cd07703 Ig2_Nectin-2_like Seco 93.6 0.27 5.9E-06 36.5 6.0 71 97-170 16-87 (95)
433 PF06328 Lep_receptor_Ig: Ig-l 93.6 1.2 2.7E-05 32.5 9.2 66 88-160 10-80 (89)
434 PF07495 Y_Y_Y: Y_Y_Y domain; 93.4 0.51 1.1E-05 32.3 6.9 28 555-583 30-57 (66)
435 COG4733 Phage-related protein, 93.0 1.4 3.1E-05 45.7 11.6 124 244-376 660-784 (952)
436 PF09240 IL6Ra-bind: Interleuk 92.7 2.4 5.2E-05 31.9 10.2 83 497-582 2-89 (99)
437 KOG4597|consensus 92.7 0.16 3.5E-06 48.3 4.4 86 88-176 203-291 (560)
438 PLN02533 probable purple acid 92.5 0.96 2.1E-05 44.9 9.9 87 493-593 40-135 (427)
439 PHA03052 Hypothetical protein; 92.0 0.38 8.2E-06 32.0 4.2 30 2-31 9-41 (69)
440 TIGR00868 hCaCC calcium-activa 91.4 24 0.00053 38.3 25.4 88 493-583 755-859 (863)
441 PF05790 C2-set: Immunoglobuli 91.3 0.96 2.1E-05 32.3 6.1 63 8-77 8-78 (80)
442 PHA03283 envelope glycoprotein 91.0 9.6 0.00021 37.6 14.1 76 44-119 135-233 (542)
443 PHA02865 MHC-like TNF binding 90.9 0.44 9.6E-06 44.2 5.2 21 7-27 216-238 (338)
444 PF07354 Sp38: Zona-pellucida- 90.9 0.39 8.4E-06 42.3 4.5 44 113-163 13-58 (271)
445 PHA03052 Hypothetical protein; 90.9 2.2 4.8E-05 28.6 6.8 40 88-127 4-44 (69)
446 PLN02533 probable purple acid 90.1 6.8 0.00015 39.0 13.0 88 287-387 40-135 (427)
447 PF09240 IL6Ra-bind: Interleuk 89.4 6.1 0.00013 29.7 9.6 80 393-477 1-86 (99)
448 PF02010 REJ: REJ domain; Int 88.2 0.73 1.6E-05 46.5 5.0 167 7-177 2-186 (440)
449 PF06832 BiPBP_C: Penicillin-B 87.9 3.6 7.8E-05 30.2 7.2 56 7-71 31-86 (89)
450 PF03921 ICAM_N: Intercellular 86.9 4.7 0.0001 29.5 7.0 73 2-82 15-90 (91)
451 PF02480 Herpes_gE: Alphaherpe 85.6 2 4.4E-05 42.4 6.1 79 42-120 88-190 (439)
452 PF14292 SusE: SusE outer memb 84.7 14 0.0003 29.1 9.6 74 499-574 36-121 (122)
453 PHA02865 MHC-like TNF binding 83.6 5.2 0.00011 37.4 7.5 23 98-120 216-238 (338)
454 PF05790 C2-set: Immunoglobuli 83.2 11 0.00023 27.0 7.4 37 140-176 41-78 (80)
455 PHA03189 UL14 tegument protein 81.9 15 0.00032 33.4 9.2 82 87-168 58-159 (348)
456 KOG1225|consensus 81.1 5.9 0.00013 39.8 7.3 155 394-571 369-524 (525)
457 KOG1948|consensus 79.2 96 0.0021 33.3 16.3 21 452-472 946-966 (1165)
458 PF07495 Y_Y_Y: Y_Y_Y domain; 78.4 7.8 0.00017 26.3 5.4 26 453-479 30-55 (66)
459 PHA03189 UL14 tegument protein 77.3 14 0.0003 33.6 7.6 65 2-67 64-157 (348)
460 PHA03112 IL-18 binding protein 76.1 5.8 0.00013 31.5 4.5 69 3-71 36-124 (141)
461 KOG1026|consensus 75.7 0.99 2.2E-05 47.0 0.4 161 4-179 66-275 (774)
462 PHA03240 envelope glycoprotein 74.4 5.3 0.00011 33.8 4.1 60 2-61 35-123 (258)
463 PF06832 BiPBP_C: Penicillin-B 74.0 32 0.00069 25.2 9.4 56 98-170 31-86 (89)
464 TIGR00868 hCaCC calcium-activa 70.6 1.7E+02 0.0038 32.2 24.4 88 290-378 758-859 (863)
465 PF02440 Adeno_E3_CR1: Adenovi 65.2 13 0.00029 24.9 3.8 51 2-56 2-63 (63)
466 PF07353 Uroplakin_II: Uroplak 65.1 3.6 7.8E-05 32.9 1.3 39 552-592 100-138 (184)
467 PF13750 Big_3_3: Bacterial Ig 64.5 83 0.0018 26.2 12.0 33 558-592 116-148 (158)
468 PF00801 PKD: PKD domain; Int 63.9 24 0.00051 24.2 5.2 56 2-68 8-66 (69)
469 PF13754 Big_3_4: Bacterial Ig 62.1 32 0.00069 22.3 5.1 33 454-487 16-48 (54)
470 cd05890 Ig2_Nectin-1_like Seco 59.4 43 0.00094 24.7 5.7 56 7-65 22-86 (98)
471 KOG0200|consensus 59.2 39 0.00085 35.8 8.1 125 41-174 11-149 (609)
472 KOG1948|consensus 58.7 2.7E+02 0.0059 30.2 14.4 22 349-370 946-967 (1165)
473 PF10342 GPI-anchored: Ser-Thr 56.8 48 0.001 24.3 6.2 62 506-572 11-77 (93)
474 PF09423 PhoD: PhoD-like phosp 56.1 89 0.0019 31.7 9.8 52 348-405 63-114 (453)
475 PF09191 CD4-extracel: CD4, ex 55.6 82 0.0018 23.5 6.5 77 1-77 8-108 (108)
476 smart00089 PKD Repeats in poly 54.2 74 0.0016 22.4 7.9 63 4-77 13-78 (79)
477 PF15096 G6B: G6B family 53.9 15 0.00032 30.4 3.0 73 2-79 8-107 (224)
478 smart00089 PKD Repeats in poly 53.7 76 0.0016 22.3 7.6 64 95-176 13-78 (79)
479 KOG3611|consensus 53.0 19 0.00041 38.4 4.4 58 7-65 571-634 (737)
480 PHA03286 envelope glycoprotein 52.2 2.5E+02 0.0053 27.8 11.2 76 44-119 128-225 (492)
481 PF10342 GPI-anchored: Ser-Thr 51.8 93 0.002 22.8 8.2 62 302-368 13-78 (93)
482 KOG1225|consensus 50.2 28 0.00061 35.2 4.9 107 348-469 417-524 (525)
483 PF11344 DUF3146: Protein of u 50.1 11 0.00025 25.8 1.5 15 560-574 66-80 (80)
484 PHA03282 envelope glycoprotein 49.3 40 0.00087 33.0 5.4 43 135-177 117-161 (540)
485 PF13754 Big_3_4: Bacterial Ig 49.2 71 0.0015 20.7 5.2 28 555-583 15-42 (54)
486 PF11141 DUF2914: Protein of u 48.6 85 0.0018 21.4 7.0 52 21-77 8-65 (66)
487 PHA03281 envelope glycoprotein 47.9 1.3E+02 0.0029 30.3 8.7 38 42-79 297-335 (642)
488 PF11141 DUF2914: Protein of u 44.2 1E+02 0.0022 21.1 8.0 60 112-176 6-65 (66)
489 KOG1378|consensus 44.1 1.7E+02 0.0038 29.0 8.9 36 552-593 107-142 (452)
490 KOG3834|consensus 37.9 68 0.0015 31.1 5.1 70 397-469 68-137 (462)
491 PF02480 Herpes_gE: Alphaherpe 37.5 69 0.0015 32.0 5.4 69 4-77 233-302 (439)
492 PHA03240 envelope glycoprotein 37.1 61 0.0013 27.8 4.1 30 139-168 102-131 (258)
493 PF09423 PhoD: PhoD-like phosp 36.8 60 0.0013 32.9 5.1 48 453-506 65-112 (453)
494 COG5475 Uncharacterized small 36.8 1E+02 0.0022 19.9 4.0 33 38-72 12-45 (60)
495 PRK14081 triple tyrosine motif 36.7 5.5E+02 0.012 27.4 31.2 325 5-373 305-652 (667)
496 PF08329 ChitinaseA_N: Chitina 36.6 2.2E+02 0.0048 22.8 8.7 65 402-479 35-99 (133)
497 PHA03112 IL-18 binding protein 36.0 2.3E+02 0.005 22.9 6.9 28 94-121 36-63 (141)
498 PF01688 Herpes_gI: Alphaherpe 35.9 89 0.0019 25.9 4.9 33 45-77 126-158 (161)
499 PHA03283 envelope glycoprotein 35.7 1.1E+02 0.0023 30.8 6.1 39 140-178 132-170 (542)
500 PHA02579 7 baseplate wedge sub 34.0 2.1E+02 0.0046 30.4 8.0 74 496-576 7-87 (1030)
No 1
>KOG3513|consensus
Probab=100.00 E-value=5.7e-72 Score=556.79 Aligned_cols=578 Identities=36% Similarity=0.606 Sum_probs=491.8
Q ss_pred CCCCCceEEEEeeeCCCCCCeeEEEeCCEEccCCCcEEEccCCcEEEccCCCCCCEEEEEEEEcCCCCceeeEEEEEEeC
Q psy12061 1 YAGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTATNVHGMDESKGRLIVLHG 80 (626)
Q Consensus 1 ~~~~G~~~~l~C~~~g~p~p~i~W~~~~~~i~~~~~~~~~~~g~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~ 80 (626)
+|..|.++.|.|...+.|.|.++|.|++..+..++|+++..+|+|.|.+++.+|+|.|+|.|.|..|.+.+.+.|.|..+
T Consensus 437 ~a~~g~~v~i~C~~~asP~p~~~W~k~~~~~~~~~r~~i~edGtL~I~n~t~~DaG~YtC~A~N~~G~a~~~~~L~Vkd~ 516 (1051)
T KOG3513|consen 437 MAVVGGTVTIDCKPFASPKPKVSWLKGGEKLLQSGRIRILEDGTLEISNVTRSDAGKYTCVAENKLGKAESTGNLIVKDA 516 (1051)
T ss_pred EEEeCCeEEEeeccCCCCcceEEEEcCCcccccCceEEECCCCcEEecccCcccCcEEEEEEEcccCccceEEEEEEecC
Confidence 46789999999999999999999999999778899999999999999999999999999999999999999999999988
Q ss_pred CceeeeCCCceEEecCCcEEEEEEecccCCcceeEEEeeCCEEeccccCCccCCCeeEecC---CeEEEeecCCCCCEeE
Q psy12061 81 PSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDG---GLLEITNASFADAGEY 157 (626)
Q Consensus 81 p~~~~~~~~~~~v~~g~~~~l~C~~~~~p~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~---~~l~i~~~~~~d~g~Y 157 (626)
+.+.. +|.+..+..|+.++|.|.+.-++.+++.+.|.+||..+.... .........+ +.|.|.++++.|+|.|
T Consensus 517 tri~~-~P~~~~v~~g~~v~l~Ce~shD~~ld~~f~W~~nG~~id~~~---~~~~~~~~~~~~~g~L~i~nv~l~~~G~Y 592 (1051)
T KOG3513|consen 517 TRITL-APSNTDVKVGESVTLTCEASHDPSLDITFTWKKNGRPIDFNP---DGDHFEINDGSDSGRLTIANVSLEDSGKY 592 (1051)
T ss_pred ceEEe-ccchhhhccCceEEEEeecccCCCcceEEEEEECCEEhhccC---CCCceEEeCCcCccceEEEeeccccCceE
Confidence 88877 899999999999999999999999999999999999987653 1122222222 3599999999999999
Q ss_pred EEEEEeCCCceEEEEEEEEeCCCCCCCceEEEEEeccceEEEEecCCCCCCcccEEEEEEeecCCCCceEeecceeeeee
Q psy12061 158 ECVVKSTVGKISTKTTVIVEGPPGLPGGVQVVEVHKTSATIQWTDGATNGRPITHYKIIARTNWNSTWFNVSEHVIGKEV 237 (626)
Q Consensus 158 ~C~a~n~~g~~~~~~~l~v~~~P~~p~~~~~~~~~~~~~~l~W~~~~~~~~~~~~y~v~~~~~~~~~w~~~~~~~~~~~~ 237 (626)
.|+|+....+.++.+.+.|.++|.||.++.+...+.+++.|+|+++.++..++..|.|+.+......|..+.. .....
T Consensus 593 ~C~aqT~~Ds~s~~A~l~V~gpPgpP~~v~~~~i~~t~~~lsW~~g~dn~SpI~~Y~iq~rt~~~~~W~~v~~-vp~~~- 670 (1051)
T KOG3513|consen 593 TCVAQTALDSASARADLLVRGPPGPPPDVHVDDISDTTARLSWSPGSDNNSPIEKYTIQFRTPFPGKWKAVTT-VPGNI- 670 (1051)
T ss_pred EEEEEEeecchhcccceEEecCCCCCCceeEeeeccceEEEEeecCCCCCCCceEEeEEecCCCCCcceEeeE-CCCcc-
Confidence 9999999999999999999999999999999999999999999999999999999999999999999998873 22211
Q ss_pred eccCCceeEEEEeeccCCceEEEEEEEecCCccCCCCCCCCcccCCCCCCCCCCceeEeecCCcCeEEEEEeeCCCCCcc
Q psy12061 238 DRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPSPQYNTPADKPYQAPSRIGGGGGKIGDLSISWEPLPREKQN 317 (626)
Q Consensus 238 ~~~~~~~~~~i~~~l~~~~~y~~~v~a~n~~g~~~~s~~~~~~~~~~~~p~~~p~~~~~~~~~~~~v~l~W~~~~~~~~~ 317 (626)
.+..+..+.+ |.|..+|+|||+|.|..|.+.+|.++...+|.+..|...|.++.......+.+.|.|++.+....+
T Consensus 671 ---~~~~sa~vv~-L~Pwv~YeFRV~AvN~iG~gePS~pS~~~rT~ea~P~~~P~nv~g~g~~~~eLvItW~Pl~~~~qN 746 (1051)
T KOG3513|consen 671 ---TGDESATVVN-LSPWVEYEFRVVAVNSIGIGEPSPPSEKVRTPEAAPSVNPSNVKGGGGSPTELVITWEPLPEEEQN 746 (1051)
T ss_pred ---cCccceeEEc-cCCCcceEEEEEEEcccccCCCCCCccceecCCCCCccCCccccccCCCCceEEEEeccCCHHHcc
Confidence 2222355666 999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCcceEEEEEEecCCC-cceeeeeeeecceeeEEEEeCCCcceeEEEEEEEEecCCCCCCCCccEEEEccCCCCCCCCCc
Q psy12061 318 APNIYYKIFWRKKNDT-EFQSETLKEYGNVGIAVVRIPSEFYYTEYEVKVQAINDVGPGPESEVVTIFSAEDMPQVAPQG 396 (626)
Q Consensus 318 ~~~~~y~i~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~L~p~~~Y~~~v~a~n~~g~~~~s~~~~~~t~~~~p~~~p~~ 396 (626)
++..+|+|.|+..+.. .|+...+... +.....+..+...|.+.|.++|+|.|..|.|+.|....+.+.++.|+.+|..
T Consensus 747 G~gfgY~Vswr~~g~~~~W~~~~v~~~-d~~~~V~~~~st~~~tpyevKVqa~N~~GeGp~s~~~v~~S~Ed~P~~ap~~ 825 (1051)
T KOG3513|consen 747 GPGFGYRVSWRPQGADKEWKEVIVSNQ-DQPRYVVSNESTEPFTPYEVKVQAINDQGEGPESQVTVGYSGEDEPPVAPTK 825 (1051)
T ss_pred CCCceEEEEEEeCCCCcccceeEeccc-CCceEEEcCCCCCCcceeEEEEEEecCCCCCCCCceEEEEcCCCCCCCCCcc
Confidence 9999999999999966 8987766532 2345566666778899999999999999999999999999999999999999
Q ss_pred eEEEeeecceEEEEeeeccccccccceeeEEEEEEEEecCCCccceEEEEecCccceEEEeCCccCceEEEEEEEeeCCC
Q psy12061 397 VFSRGFNSTAINVTWNPIELIRENIRGRLIGHRIKYWKEDNPEETAVYYLSRTTRNWALIVGLQPDTKYYVKVMAYNNAG 476 (626)
Q Consensus 397 ~~~~~~~~~si~l~W~~~~~~~~~~~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~v~V~a~~~~g 476 (626)
+.+...+.+.+.|+|+++...+ |.+.||.|+||................+.++..|.||++.|.|.|.|+|+|.+|
T Consensus 826 ~~~~~~s~s~~~v~W~~~~~~n----G~l~gY~v~Y~~~~~~~~~~~~~~i~~~~~~~~ltgL~~~T~Y~~~vrA~nsaG 901 (1051)
T KOG3513|consen 826 LSAKPLSSSEVNLSWKPPLWDN----GKLTGYEVKYWKINEKEGSLSRVQIAGNRTSWRLTGLEPNTKYRFYVRAYTSAG 901 (1051)
T ss_pred ceeecccCceEEEEecCcCccC----CccceeEEEEEEcCCCcccccceeecCCcceEeeeCCCCCceEEEEEEEecCCC
Confidence 9999999999999999986543 889999999999998854444444557788899999999999999999999999
Q ss_pred CCCCCccEEEeecCCCCCC----CCceEEEeeeCCCEEEEEEeecCCCCCCCceeeEEEEEEEeccCCccccceeeecCc
Q psy12061 477 EGPESERYLERTYRKAPQK----PPSAVHIKGINPTTVHVTWRYVSPSFEEEPIIGYKVRVWEVDQDMSRANDTIIPVGN 552 (626)
Q Consensus 477 ~s~~s~~~~~~t~~~~p~~----~p~~l~~~~~~~~~~~l~W~~~~~~~~~~~i~~Y~i~~~~~~~~~~~~~~~~~~~~~ 552 (626)
.|+.|.....+|....|+. +|.++ +.......+.|.|....+......+.+|.|.|+............... .
T Consensus 902 ~Gp~s~~~~~tt~k~pPs~~~~~p~g~~-~~~~~~~~~~l~w~~v~~~~nes~v~gYkV~~~~~~~~~~~~~~t~~~--~ 978 (1051)
T KOG3513|consen 902 GGPASSEENVTTKKAPPSQVDIAPPGNF-IWKFSASILLLLWLLVSAFENESEVGGYKVLYREDLQNDIEIILTMKL--D 978 (1051)
T ss_pred CCCCccceeccccCCCCcccccCCCcce-EEeeeeeEEEEEEeeEEEEeecccCcceEEEEeecccCCceeEecccc--c
Confidence 9999999888888877764 55554 566778899999998777777778999999988776653221111111 1
Q ss_pred cceEEecCCCCCceEEEEEEEEecCCCCCCCCCcEEEeeccccccc
Q psy12061 553 TLDADIVDLSPGKRYHMRVLAFSNGGDGRMSSPAITFQMGEEKEFK 598 (626)
Q Consensus 553 ~~~~~l~~L~p~~~Y~~~V~a~~~~G~g~~s~~~~~~~~~~~~~~~ 598 (626)
...-....+ +..|.++|++.+..|.|..+++.....+.......
T Consensus 979 ~~~~~p~~~--~~~y~i~v~~~~~ggdg~~s~~~~~~s~~~~~~~~ 1022 (1051)
T KOG3513|consen 979 AEFPEPSDL--DGKYDIKVRGYSPGGDGTISEEISIDSLGSYGTMD 1022 (1051)
T ss_pred ccccCcccc--CCcceeEeccccCCCCCCcCCccccccccCcCCCC
Confidence 111122333 26799999999999999988877666555544333
No 2
>KOG3513|consensus
Probab=100.00 E-value=2.6e-67 Score=523.63 Aligned_cols=563 Identities=24% Similarity=0.391 Sum_probs=436.7
Q ss_pred CCCCceEEEEeeeCCCCCCeeEEEeCCEEccCCCc---EEEccCCcEEEccCCCCCCEEEEEEEEcCCCCceeeEEEEEE
Q psy12061 2 AGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGR---RKIFENGNLLISPVSRDDSGIYSCTATNVHGMDESKGRLIVL 78 (626)
Q Consensus 2 ~~~G~~~~l~C~~~g~p~p~i~W~~~~~~i~~~~~---~~~~~~g~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~v~ 78 (626)
+..|++++|.|.+.|.|.|+|+|+|||.+|...+| +.+ .+|.|+|.+|+.+|+|.|+|.|+|..|...+.|.|.|.
T Consensus 343 ~~~gs~v~~eC~a~g~P~p~v~WlkNg~pl~~~~r~~~~~i-~~g~L~is~v~~~dsg~YQC~A~Nk~G~i~anA~L~V~ 421 (1051)
T KOG3513|consen 343 ADTGSNVTLECKASGKPNPTVKWLKNGEPLEPAERDPRYKI-DDGTLIISNVQESDSGVYQCIAENKYGTIYANAELKVL 421 (1051)
T ss_pred ecCCCCeEEEEEecCCCCCceEEeeCCeecCccCCCcceEE-eCCEEEEEecccccCeEEEeeeecccceEeeeeEEEEE
Confidence 45799999999999999999999999999987666 665 57889999999999999999999999999999999998
Q ss_pred eC-CceeeeCCCc-eEEecCCcEEEEEEecccCCcceeEEEeeCCEEeccccCCccCCCeeEe-cCCeEEEeecCCCCCE
Q psy12061 79 HG-PSYYEQLPPK-ITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINI-DGGLLEITNASFADAG 155 (626)
Q Consensus 79 ~~-p~~~~~~~~~-~~v~~g~~~~l~C~~~~~p~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~-~~~~l~i~~~~~~d~g 155 (626)
.. |.+...+-.. ..+..|.++.|.|...+.|.| .+.|.|++..+..+ .|+.+ .+++|.|.+++.+|+|
T Consensus 422 a~~P~f~~~p~~~~~~a~~g~~v~i~C~~~asP~p--~~~W~k~~~~~~~~-------~r~~i~edGtL~I~n~t~~DaG 492 (1051)
T KOG3513|consen 422 ASAPVFPLNPVERKVMAVVGGTVTIDCKPFASPKP--KVSWLKGGEKLLQS-------GRIRILEDGTLEISNVTRSDAG 492 (1051)
T ss_pred ccCCCCCCCccceEEEEEeCCeEEEeeccCCCCcc--eEEEEcCCcccccC-------ceEEECCCCcEEecccCcccCc
Confidence 85 6655543333 567899999999999999987 45899999854443 67776 8999999999999999
Q ss_pred eEEEEEEeCCCceEEEEEEEEeCCCC---CCCceEEEEEeccceEEEEecCCCCCCcccEEEEEEeecCCCCceEeecce
Q psy12061 156 EYECVVKSTVGKISTKTTVIVEGPPG---LPGGVQVVEVHKTSATIQWTDGATNGRPITHYKIIARTNWNSTWFNVSEHV 232 (626)
Q Consensus 156 ~Y~C~a~n~~g~~~~~~~l~v~~~P~---~p~~~~~~~~~~~~~~l~W~~~~~~~~~~~~y~v~~~~~~~~~w~~~~~~~ 232 (626)
.|+|.|.|..|.+...+.|.|..++. +|.+.. .....++.|.|+...+. .+.-.+.|..++. .|.......
T Consensus 493 ~YtC~A~N~~G~a~~~~~L~Vkd~tri~~~P~~~~--v~~g~~v~l~Ce~shD~---~ld~~f~W~~nG~-~id~~~~~~ 566 (1051)
T KOG3513|consen 493 KYTCVAENKLGKAESTGNLIVKDATRITLAPSNTD--VKVGESVTLTCEASHDP---SLDITFTWKKNGR-PIDFNPDGD 566 (1051)
T ss_pred EEEEEEEcccCccceEEEEEEecCceEEeccchhh--hccCceEEEEeecccCC---CcceEEEEEECCE-EhhccCCCC
Confidence 99999999999999999999998875 343322 23356677777754332 2222233333221 111111111
Q ss_pred eeeeeeccCCceeEEEEeeccCCceEEEEEEEecCCccCCCCCCCCcccCCCCCCCCCCceeEeecCCcCeEEEEEeeCC
Q psy12061 233 IGKEVDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPSPQYNTPADKPYQAPSRIGGGGGKIGDLSISWEPLP 312 (626)
Q Consensus 233 ~~~~~~~~~~~~~~~i~~~l~~~~~y~~~v~a~n~~g~~~~s~~~~~~~~~~~~p~~~p~~~~~~~~~~~~v~l~W~~~~ 312 (626)
.......... ..+.+.+ +...+.+.|.|+|..... +........++. |+.||.++.+...+.+++.|+|++
T Consensus 567 ~~~~~~~~~~-g~L~i~n-v~l~~~G~Y~C~aqT~~D-s~s~~A~l~V~g----pPgpP~~v~~~~i~~t~~~lsW~~-- 637 (1051)
T KOG3513|consen 567 HFEINDGSDS-GRLTIAN-VSLEDSGKYTCVAQTALD-SASARADLLVRG----PPGPPPDVHVDDISDTTARLSWSP-- 637 (1051)
T ss_pred ceEEeCCcCc-cceEEEe-eccccCceEEEEEEEeec-chhcccceEEec----CCCCCCceeEeeeccceEEEEeec--
Confidence 1111111111 3566666 777777778888776433 222232223333 335666899999999999999998
Q ss_pred CCCcccCcceEEEEEEecCCCcceeeeeeeeccee-eEEEEeCCCcceeEEEEEEEEecCCCCCCCCccE-EEEccCCCC
Q psy12061 313 REKQNAPNIYYKIFWRKKNDTEFQSETLKEYGNVG-IAVVRIPSEFYYTEYEVKVQAINDVGPGPESEVV-TIFSAEDMP 390 (626)
Q Consensus 313 ~~~~~~~~~~y~i~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~L~p~~~Y~~~v~a~n~~g~~~~s~~~-~~~t~~~~p 390 (626)
..+.+++|..|.|+.+..-...|+... ..+.... ..+.++-+|.|...|+|||.|.|..|.|.+|.+. ..+|.+++|
T Consensus 638 g~dn~SpI~~Y~iq~rt~~~~~W~~v~-~vp~~~~~~~sa~vv~L~Pwv~YeFRV~AvN~iG~gePS~pS~~~rT~ea~P 716 (1051)
T KOG3513|consen 638 GSDNNSPIEKYTIQFRTPFPGKWKAVT-TVPGNITGDESATVVNLSPWVEYEFRVVAVNSIGIGEPSPPSEKVRTPEAAP 716 (1051)
T ss_pred CCCCCCCceEEeEEecCCCCCcceEee-ECCCcccCccceeEEccCCCcceEEEEEEEcccccCCCCCCccceecCCCCC
Confidence 567778899999999988889999887 3332222 1345677999999999999999999999998876 578999999
Q ss_pred CCCCCceEEEeeecceEEEEeeeccccccccceeeEEEEEEEEecCCC-ccceEEEEecCccceEEEe--CCccCceEEE
Q psy12061 391 QVAPQGVFSRGFNSTAINVTWNPIELIRENIRGRLIGHRIKYWKEDNP-EETAVYYLSRTTRNWALIV--GLQPDTKYYV 467 (626)
Q Consensus 391 ~~~p~~~~~~~~~~~si~l~W~~~~~~~~~~~~~i~~Y~v~~~~~~~~-~~~~~~~~~~~~~~~~~i~--~L~p~t~Y~v 467 (626)
...|.+++......+.+.|.|++.....++ |+-.+|+|.|+..+.. .+.... +.......+.+. ...|++.|.+
T Consensus 717 ~~~P~nv~g~g~~~~eLvItW~Pl~~~~qN--G~gfgY~Vswr~~g~~~~W~~~~-v~~~d~~~~V~~~~st~~~tpyev 793 (1051)
T KOG3513|consen 717 SVNPSNVKGGGGSPTELVITWEPLPEEEQN--GPGFGYRVSWRPQGADKEWKEVI-VSNQDQPRYVVSNESTEPFTPYEV 793 (1051)
T ss_pred ccCCccccccCCCCceEEEEeccCCHHHcc--CCCceEEEEEEeCCCCcccceeE-ecccCCceEEEcCCCCCCcceeEE
Confidence 999999999999999999999998876555 8899999999999888 444333 333333335444 4456999999
Q ss_pred EEEEeeCCCCCCCCccEEEeecCCCCCCCCceEEEeeeCCCEEEEEEeecCCCCCCCceeeEEEEEEEeccCCcccccee
Q psy12061 468 KVMAYNNAGEGPESERYLERTYRKAPQKPPSAVHIKGINPTTVHVTWRYVSPSFEEEPIIGYKVRVWEVDQDMSRANDTI 547 (626)
Q Consensus 468 ~V~a~~~~g~s~~s~~~~~~t~~~~p~~~p~~l~~~~~~~~~~~l~W~~~~~~~~~~~i~~Y~i~~~~~~~~~~~~~~~~ 547 (626)
.|+|+|..|.|+.|....+.+.++.|+.+|..+.+...+.+.+.|+|+ ++...||.+++|.|.||..+....... ..
T Consensus 794 KVqa~N~~GeGp~s~~~v~~S~Ed~P~~ap~~~~~~~~s~s~~~v~W~--~~~~~nG~l~gY~v~Y~~~~~~~~~~~-~~ 870 (1051)
T KOG3513|consen 794 KVQAINDQGEGPESQVTVGYSGEDEPPVAPTKLSAKPLSSSEVNLSWK--PPLWDNGKLTGYEVKYWKINEKEGSLS-RV 870 (1051)
T ss_pred EEEEecCCCCCCCCceEEEEcCCCCCCCCCccceeecccCceEEEEec--CcCccCCccceeEEEEEEcCCCccccc-ce
Confidence 999999999999999999999999999999999999999999999999 566677999999999998877643333 34
Q ss_pred eecCccceEEecCCCCCceEEEEEEEEecCCCCCCCCCcEEEeecccccc
Q psy12061 548 IPVGNTLDADIVDLSPGKRYHMRVLAFSNGGDGRMSSPAITFQMGEEKEF 597 (626)
Q Consensus 548 ~~~~~~~~~~l~~L~p~~~Y~~~V~a~~~~G~g~~s~~~~~~~~~~~~~~ 597 (626)
...++.++..|.||++.+.|.|.|+|+|++|.|+.|.... .++.+.++.
T Consensus 871 ~i~~~~~~~~ltgL~~~T~Y~~~vrA~nsaG~Gp~s~~~~-~tt~k~pPs 919 (1051)
T KOG3513|consen 871 QIAGNRTSWRLTGLEPNTKYRFYVRAYTSAGGGPASSEEN-VTTKKAPPS 919 (1051)
T ss_pred eecCCcceEeeeCCCCCceEEEEEEEecCCCCCCCcccee-ccccCCCCc
Confidence 4458999999999999999999999999999999886543 455554444
No 3
>KOG4221|consensus
Probab=100.00 E-value=3.4e-66 Score=511.75 Aligned_cols=550 Identities=25% Similarity=0.413 Sum_probs=453.1
Q ss_pred CCCCceEEEEeeeCCCCCCeeEEEeCCEEccCC-CcEEEccCCcEEEccCCCCCCEEEEEEEEcCCCCceeeEEEEEEeC
Q psy12061 2 AGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSG-GRRKIFENGNLLISPVSRDDSGIYSCTATNVHGMDESKGRLIVLHG 80 (626)
Q Consensus 2 ~~~G~~~~l~C~~~g~p~p~i~W~~~~~~i~~~-~~~~~~~~g~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~ 80 (626)
+++|+++.|+|.+.|.|.|.|.|.|||..|+.+ .|+.+...++|.|.+++.+|+|.|+|.|.|......+.+.|.|..+
T Consensus 249 v~~g~~v~leCvvs~~p~p~v~Wlrng~~i~~ds~rivl~g~~slliS~a~~~dSg~YtC~Atn~~D~idasaev~V~a~ 328 (1381)
T KOG4221|consen 249 VVEGDDVVLECVVSGVPKPSVKWLRNGEKISVDSYRIVLVGGSSLLISNATDDDSGKYTCRATNTNDSIDASAEVTVLAP 328 (1381)
T ss_pred cccCCcEEEEEEecCCCCCceEEeeCCeeeeecceEEEEecccceEEeccccccCceEEEEecCCCcccccceEEEEEcC
Confidence 579999999999999999999999999999855 4555566778999999999999999999998888899999999888
Q ss_pred CceeeeCCCceEEecCCcEEEEEEecccCCcceeEEEeeCCEEeccccCCccCCCeeEecCCeEEEeecCCCCCEeEEEE
Q psy12061 81 PSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEITNASFADAGEYECV 160 (626)
Q Consensus 81 p~~~~~~~~~~~v~~g~~~~l~C~~~~~p~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~ 160 (626)
|.++. .|..+...++.++.|+|.+.+.|.| .+.|+|||..+..++. .++. .++.|+|..+-..|.|.|+|.
T Consensus 329 P~~~~-~p~~l~A~e~~die~ec~~~g~p~p--~v~w~kNgd~~ipsdy-----~ki~-~~~~lrIlgi~~sdeg~yQcv 399 (1381)
T KOG4221|consen 329 PGFTK-APTTLVAHESMDIEFECPVSGKPIP--TVRWYKNGDRIIPSDY-----FKIV-GGGNLRILGIVKSDEGFYQCV 399 (1381)
T ss_pred CCCCC-CCcceeeeeccceeEeCCCCCCCcc--eEEEEecCcccCcccc-----eEec-CCCCcEEEEEecccchhhhhh
Confidence 87776 5788889999999999999999877 4589999999887642 2222 344499999999999999999
Q ss_pred EEeCCCceEEEEEEEEeCC---------CCCCCceEEEEEeccceEEEEecCCCCCCcccEEEEEEeecCCCCceEeecc
Q psy12061 161 VKSTVGKISTKTTVIVEGP---------PGLPGGVQVVEVHKTSATIQWTDGATNGRPITHYKIIARTNWNSTWFNVSEH 231 (626)
Q Consensus 161 a~n~~g~~~~~~~l~v~~~---------P~~p~~~~~~~~~~~~~~l~W~~~~~~~~~~~~y~v~~~~~~~~~w~~~~~~ 231 (626)
+.|..|.+...+.+.+... |..|..+.+.....+.+.++|.+|...+.++..|.+.+...+ ..|.+....
T Consensus 400 aen~~G~a~a~a~l~vv~~p~~~~s~~~~sap~~lv~~~~~srfi~~tw~~p~~~~g~i~~~~v~~~~~~-~~rer~~~t 478 (1381)
T KOG4221|consen 400 AENDAGSAQAAAQLEVVPQPASASSDLLPSAPRDLVANLVSSRFIQLTWRPPAQISGNISTYTVFYKVEG-DVRERLQNT 478 (1381)
T ss_pred hccCcccccchhhheeccCCcccccCccccCCcceecccccceeEEEeecCccccCCCcceEEEEEecCC-chhhhheec
Confidence 9999999999888865443 446778888888899999999988877888999998887653 334332221
Q ss_pred eeeeeeeccCCceeEEEEeeccCCceEEEEEEEecCCccCCCCCCCCcccCCCCCCCCCCceeEeecCCcCeEEEEEeeC
Q psy12061 232 VIGKEVDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPSPQYNTPADKPYQAPSRIGGGGGKIGDLSISWEPL 311 (626)
Q Consensus 232 ~~~~~~~~~~~~~~~~i~~~l~~~~~y~~~v~a~n~~g~~~~s~~~~~~~~~~~~p~~~p~~~~~~~~~~~~v~l~W~~~ 311 (626)
. ..+ ....+.+ |.+.+.|.|+|+|.|..|.+.++.+. .+.+.++ .++. +.+...+..++.+.|++
T Consensus 479 s-------s~g-~~~tv~n-l~p~t~Y~~rv~A~n~~g~g~sS~pL-kV~t~pE---gp~~-~~a~ats~~ti~v~Wep- 543 (1381)
T KOG4221|consen 479 S-------SPG-IQVTVQN-LSPLTMYFFRVRAKNEAGSGESSAPL-KVTTQPE---GPVQ-LQAYATSPTTILVTWEP- 543 (1381)
T ss_pred c-------CCc-eEEEeee-cccceeEEEEEeccCcccCCccCCce-EEecCCC---CCcc-ccccccCcceEEEEecC-
Confidence 1 123 5667777 99999999999999999999888886 4455444 2333 88888889999999998
Q ss_pred CCCCcccCcceEEEEEEecCCCcceeeeeeeecceeeEEEEeCCCcceeEEEEEEEEecCCCCCCCCccEEEEccCCCCC
Q psy12061 312 PREKQNAPNIYYKIFWRKKNDTEFQSETLKEYGNVGIAVVRIPSEFYYTEYEVKVQAINDVGPGPESEVVTIFSAEDMPQ 391 (626)
Q Consensus 312 ~~~~~~~~~~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~p~~~Y~~~v~a~n~~g~~~~s~~~~~~t~~~~p~ 391 (626)
|...++++++|++.|...+.+.|..... +...++|.+|++.+.|.|+|.|.|..|.|..|..+.+.|..+.|.
T Consensus 544 -P~~~n~~I~~yk~~ys~~~~~~~~~~~~------n~~e~ti~gL~k~TeY~~~vvA~N~~G~g~sS~~i~V~Tlsd~Ps 616 (1381)
T KOG4221|consen 544 -PPFGNGPITGYKLFYSEDDTGKELRVEN------NATEYTINGLEKYTEYSIRVVAYNSAGSGVSSADITVRTLSDVPS 616 (1381)
T ss_pred -CCCCCCCceEEEEEEEcCCCCceEEEec------CccEEEeecCCCccceEEEEEEecCCCCCCCCCceEEEeccCCCC
Confidence 6678999999999999887666554432 446788999999999999999999999999999999999999999
Q ss_pred CCCCceEEEeeecceEEEEeeeccccccccceeeEEEEEEEEecCCCccceEEEEecCccceEEEeCCccCceEEEEEEE
Q psy12061 392 VAPQGVFSRGFNSTAINVTWNPIELIRENIRGRLIGHRIKYWKEDNPEETAVYYLSRTTRNWALIVGLQPDTKYYVKVMA 471 (626)
Q Consensus 392 ~~p~~~~~~~~~~~si~l~W~~~~~~~~~~~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~v~V~a 471 (626)
.||.|+++...++++|.|+|.+|..... +|.+.+|.|+|............ ....+..++.+.+|+|++.|.|+|.|
T Consensus 617 aPP~Nl~lev~sStsVrVsW~pP~~~t~--ng~itgYkIRy~~~~~~~~~~~t-~v~~n~~~~l~~~Lep~T~Y~vrIsa 693 (1381)
T KOG4221|consen 617 APPQNLSLEVVSSTSVRVSWLPPPSETQ--NGQITGYKIRYRKLSREDEVNET-VVKGNTTQYLFNGLEPNTQYRVRISA 693 (1381)
T ss_pred CCCcceEEEecCCCeEEEEccCCCcccc--cceEEEEEEEecccCccccccee-ecccchhhhHhhcCCCCceEEEEEEE
Confidence 9999999999999999999999987655 49999999999766655433222 33336677999999999999999999
Q ss_pred eeCCCCCCCCccEEEeecCCCCC----CCCceEEEeeeCCCEEEEEEeecCCCCCCCceeeEEEEEEEeccCCcccccee
Q psy12061 472 YNNAGEGPESERYLERTYRKAPQ----KPPSAVHIKGINPTTVHVTWRYVSPSFEEEPIIGYKVRVWEVDQDMSRANDTI 547 (626)
Q Consensus 472 ~~~~g~s~~s~~~~~~t~~~~p~----~~p~~l~~~~~~~~~~~l~W~~~~~~~~~~~i~~Y~i~~~~~~~~~~~~~~~~ 547 (626)
.+..|.|++|++..+.|....+. .+|..|++. ...+++.+.|+ ||.+.+-.+.+|.|.|+...+.. ....+
T Consensus 694 ~t~nGtGpaS~w~~aeT~~~d~~e~vp~~ps~l~~~-~g~~si~vsW~--Pp~~~~~~vrgY~ig~r~g~~~p--~~~tI 768 (1381)
T KOG4221|consen 694 MTVNGTGPASEWVSAETPESDLDERVPGKPSELHVH-PGSNSIVVSWT--PPPHPNIVVRGYKIGYRPGSGIP--DTGTI 768 (1381)
T ss_pred eccCCCCCcccceeccCccccccccCCCCCceeeec-cCceeEEEEeC--CCCChhhhhcceEEeeecccCCC--CCccE
Confidence 99999999999999999764332 356666544 46789999999 77778889999999886433321 25567
Q ss_pred eecCccceEEecCCCCCceEEEEEEEEecCCCCCCCCCcEEEee
Q psy12061 548 IPVGNTLDADIVDLSPGKRYHMRVLAFSNGGDGRMSSPAITFQM 591 (626)
Q Consensus 548 ~~~~~~~~~~l~~L~p~~~Y~~~V~a~~~~G~g~~s~~~~~~~~ 591 (626)
..+.....|.|..|+|+..|.++++|+|..|+|.+......++.
T Consensus 769 rl~~~~s~y~l~~Le~~~~YvVkL~AfNn~gdG~p~y~~~~tR~ 812 (1381)
T KOG4221|consen 769 RLDEKVSYYNLEQLEPNRDYVVKLRAFNNHGDGNPIYESVKTRS 812 (1381)
T ss_pred EecceeeEEEEEecccCceEEEEEEEeccCCCCcceeeeeeecc
Confidence 78888999999999999999999999999999997766555553
No 4
>KOG4221|consensus
Probab=100.00 E-value=2e-61 Score=478.04 Aligned_cols=547 Identities=23% Similarity=0.378 Sum_probs=432.4
Q ss_pred CCCCceEEEEeeeCCCCCCeeEEEeCCEEccCCCcEEEccCCcEEEccCCCCCCEEEEEEEEcCCCCce-eeEEEEEEeC
Q psy12061 2 AGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTATNVHGMDE-SKGRLIVLHG 80 (626)
Q Consensus 2 ~~~G~~~~l~C~~~g~p~p~i~W~~~~~~i~~~~~~~~~~~g~L~i~~v~~~d~G~Y~C~a~n~~g~~~-~~~~l~v~~~ 80 (626)
+-+|+++.|.|.+.+.|.|.+.|.||..+|..++|+.++.+|.|.|.+++..|.|.|+|.|.++.-... ..+.|.|...
T Consensus 152 ~~~g~ta~f~c~vn~e~~p~i~w~kn~~pl~~~~r~i~lpsG~L~I~~~qp~d~g~yrc~vt~g~~~r~S~~a~ltv~s~ 231 (1381)
T KOG4221|consen 152 LLYGQTALFSCEVNAEPVPTIMWLKNDQPLPLDSRVIVLPSGALEISGLQPSDTGEYRCVVTGGASQRTSNEAELTVLSD 231 (1381)
T ss_pred EecCCcEEEEEEEcCccCceeEEecccccccCCCcEEEcCCCcEEecccccCCCceEEEEEecCCcCCccceeEEEecCC
Confidence 458999999999999999999999999999988899999999999999999999999999998765544 3578888744
Q ss_pred Cce-----eeeCCCceEEecCCcEEEEEEecccCCcceeEEEeeCCEEeccccCCccCCCeeEe-cCCeEEEeecCCCCC
Q psy12061 81 PSY-----YEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINI-DGGLLEITNASFADA 154 (626)
Q Consensus 81 p~~-----~~~~~~~~~v~~g~~~~l~C~~~~~p~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~-~~~~l~i~~~~~~d~ 154 (626)
|.. +...|....+..|+++.|.|.+.+.|.|.+ .|+|||..+.... .++.. ..+.|.|.+++..|+
T Consensus 232 ~~~~~~~~fl~~p~~~~v~~g~~v~leCvvs~~p~p~v--~Wlrng~~i~~ds------~rivl~g~~slliS~a~~~dS 303 (1381)
T KOG4221|consen 232 PGALNKLVFLDEPSNAVVVEGDDVVLECVVSGVPKPSV--KWLRNGEKISVDS------YRIVLVGGSSLLISNATDDDS 303 (1381)
T ss_pred cccccceeeecCCCccccccCCcEEEEEEecCCCCCce--EEeeCCeeeeecc------eEEEEecccceEEeccccccC
Confidence 422 334578899999999999999999999855 8999999998653 45544 588999999999999
Q ss_pred EeEEEEEEeCCCceEEEEEEEEeCCCCCCCceEEEEEeccceEEEEecCCCCCCcccEEEEEEeecC--CCCceEeecce
Q psy12061 155 GEYECVVKSTVGKISTKTTVIVEGPPGLPGGVQVVEVHKTSATIQWTDGATNGRPITHYKIIARTNW--NSTWFNVSEHV 232 (626)
Q Consensus 155 g~Y~C~a~n~~g~~~~~~~l~v~~~P~~p~~~~~~~~~~~~~~l~W~~~~~~~~~~~~y~v~~~~~~--~~~w~~~~~~~ 232 (626)
|.|+|+|.|......+.++|.|..+|..+....-..... +..+.|+.+.. +.++..+......+- ...|.+...
T Consensus 304 g~YtC~Atn~~D~idasaev~V~a~P~~~~~p~~l~A~e-~~die~ec~~~-g~p~p~v~w~kNgd~~ipsdy~ki~~-- 379 (1381)
T KOG4221|consen 304 GKYTCRATNTNDSIDASAEVTVLAPPGFTKAPTTLVAHE-SMDIEFECPVS-GKPIPTVRWYKNGDRIIPSDYFKIVG-- 379 (1381)
T ss_pred ceEEEEecCCCcccccceEEEEEcCCCCCCCCcceeeee-ccceeEeCCCC-CCCcceEEEEecCcccCcccceEecC--
Confidence 999999999888889999999999998765554433333 77888887644 347766655443321 133333321
Q ss_pred eeeeeeccCCceeEEEEeeccCCceEEEEEEEecCCccCCCCCCCCcccC----CCCCCCCCCceeEeecCCcCeEEEEE
Q psy12061 233 IGKEVDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPSPQYNT----PADKPYQAPSRIGGGGGKIGDLSISW 308 (626)
Q Consensus 233 ~~~~~~~~~~~~~~~i~~~l~~~~~y~~~v~a~n~~g~~~~s~~~~~~~~----~~~~p~~~p~~~~~~~~~~~~v~l~W 308 (626)
+. ...+.. +...++..|+|.|.|+.|..........+.. ....-+.+|..+.+...+.+.+.++|
T Consensus 380 ---------~~-~lrIlg-i~~sdeg~yQcvaen~~G~a~a~a~l~vv~~p~~~~s~~~~sap~~lv~~~~~srfi~~tw 448 (1381)
T KOG4221|consen 380 ---------GG-NLRILG-IVKSDEGFYQCVAENDAGSAQAAAQLEVVPQPASASSDLLPSAPRDLVANLVSSRFIQLTW 448 (1381)
T ss_pred ---------CC-CcEEEE-EecccchhhhhhhccCcccccchhhheeccCCcccccCccccCCcceecccccceeEEEee
Confidence 22 255555 6667777889999999996654433211111 01222456778888888999999999
Q ss_pred eeCCCCCcccCcceEEEEEEecCCCcceeeeeeeecceeeEEEEeCCCcceeEEEEEEEEecCCCCCCCCccEEEEccCC
Q psy12061 309 EPLPREKQNAPNIYYKIFWRKKNDTEFQSETLKEYGNVGIAVVRIPSEFYYTEYEVKVQAINDVGPGPESEVVTIFSAED 388 (626)
Q Consensus 309 ~~~~~~~~~~~~~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~p~~~Y~~~v~a~n~~g~~~~s~~~~~~t~~~ 388 (626)
.+ +...++.+..|.+.|+..+.......... ..+ ...++.+|.|.+.|.|+|+|.|..|.+..|..+.+.+..+
T Consensus 449 ~~--p~~~~g~i~~~~v~~~~~~~~rer~~~ts---s~g-~~~tv~nl~p~t~Y~~rv~A~n~~g~g~sS~pLkV~t~pE 522 (1381)
T KOG4221|consen 449 RP--PAQISGNISTYTVFYKVEGDVRERLQNTS---SPG-IQVTVQNLSPLTMYFFRVRAKNEAGSGESSAPLKVTTQPE 522 (1381)
T ss_pred cC--ccccCCCcceEEEEEecCCchhhhheecc---CCc-eEEEeeecccceeEEEEEeccCcccCCccCCceEEecCCC
Confidence 96 44888999999999987763332222211 212 6778899999999999999999999999999999988666
Q ss_pred CCCCCCCceEEEeeecceEEEEeeeccccccccceeeEEEEEEEEecCCCccceEEEEecCccceEEEeCCccCceEEEE
Q psy12061 389 MPQVAPQGVFSRGFNSTAINVTWNPIELIRENIRGRLIGHRIKYWKEDNPEETAVYYLSRTTRNWALIVGLQPDTKYYVK 468 (626)
Q Consensus 389 ~p~~~p~~~~~~~~~~~si~l~W~~~~~~~~~~~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~v~ 468 (626)
+++. +.....+..++.+.|++|.-. |++|++|.+.|...+...+ .....+..+++|.+|+++|.|.|+
T Consensus 523 ---gp~~-~~a~ats~~ti~v~WepP~~~----n~~I~~yk~~ys~~~~~~~----~~~~~n~~e~ti~gL~k~TeY~~~ 590 (1381)
T KOG4221|consen 523 ---GPVQ-LQAYATSPTTILVTWEPPPFG----NGPITGYKLFYSEDDTGKE----LRVENNATEYTINGLEKYTEYSIR 590 (1381)
T ss_pred ---CCcc-ccccccCcceEEEEecCCCCC----CCCceEEEEEEEcCCCCce----EEEecCccEEEeecCCCccceEEE
Confidence 2344 888889999999999999754 3779999999976633322 233455667999999999999999
Q ss_pred EEEeeCCCCCCCCccEEEeecCCCCCCCCceEEEeeeCCCEEEEEEeecCCCCCCCceeeEEEEEEEeccCCccccceee
Q psy12061 469 VMAYNNAGEGPESERYLERTYRKAPQKPPSAVHIKGINPTTVHVTWRYVSPSFEEEPIIGYKVRVWEVDQDMSRANDTII 548 (626)
Q Consensus 469 V~a~~~~g~s~~s~~~~~~t~~~~p~~~p~~l~~~~~~~~~~~l~W~~~~~~~~~~~i~~Y~i~~~~~~~~~~~~~~~~~ 548 (626)
|.|.|..|.|..|..+.+.|..+.|++||.||++...++++|.|.|.+|++...+|.|++|+|+|+....+.. .....
T Consensus 591 vvA~N~~G~g~sS~~i~V~Tlsd~PsaPP~Nl~lev~sStsVrVsW~pP~~~t~ng~itgYkIRy~~~~~~~~--~~~t~ 668 (1381)
T KOG4221|consen 591 VVAYNSAGSGVSSADITVRTLSDVPSAPPQNLSLEVVSSTSVRVSWLPPPSETQNGQITGYKIRYRKLSREDE--VNETV 668 (1381)
T ss_pred EEEecCCCCCCCCCceEEEeccCCCCCCCcceEEEecCCCeEEEEccCCCcccccceEEEEEEEecccCcccc--cceee
Confidence 9999999999999999999999999999999999999999999999999999999999999999875443321 22334
Q ss_pred ecCccceEEecCCCCCceEEEEEEEEecCCCCCCCCCcEEEeec
Q psy12061 549 PVGNTLDADIVDLSPGKRYHMRVLAFSNGGDGRMSSPAITFQMG 592 (626)
Q Consensus 549 ~~~~~~~~~l~~L~p~~~Y~~~V~a~~~~G~g~~s~~~~~~~~~ 592 (626)
...+.+.+.+.+|+|++.|.|+|.|.|..|.|+.|++.. +.|.
T Consensus 669 v~~n~~~~l~~~Lep~T~Y~vrIsa~t~nGtGpaS~w~~-aeT~ 711 (1381)
T KOG4221|consen 669 VKGNTTQYLFNGLEPNTQYRVRISAMTVNGTGPASEWVS-AETP 711 (1381)
T ss_pred cccchhhhHhhcCCCCceEEEEEEEeccCCCCCccccee-ccCc
Confidence 455889999999999999999999999999999998754 4444
No 5
>KOG4222|consensus
Probab=100.00 E-value=3.7e-46 Score=367.93 Aligned_cols=571 Identities=22% Similarity=0.298 Sum_probs=408.9
Q ss_pred CCCCceEEEEeee-CCCCCCeeEEEeCCEEcc--CCCcEEEccCCcEEEccCCCCCCEEEEEEEEcCCCCceee-EEEEE
Q psy12061 2 AGEGGNVTIFCNP-EAAPKPKFVWKKDGNIIG--SGGRRKIFENGNLLISPVSRDDSGIYSCTATNVHGMDESK-GRLIV 77 (626)
Q Consensus 2 ~~~G~~~~l~C~~-~g~p~p~i~W~~~~~~i~--~~~~~~~~~~g~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~-~~l~v 77 (626)
+..|+.+.|+|.- .|.|.|.+.|.|+|+++. ...++.+..+|+|.|.+|...|+|.|.|+|.|-.|+..+. +.|+|
T Consensus 143 ~a~ge~avlEcgpP~ghpeptvSw~Kdg~pl~~~~~~~~~lisgG~LlIsnvrksD~GtY~CVatNmvG~ReS~~A~lsv 222 (1281)
T KOG4222|consen 143 AAVGEEAVLECGPPRGHPEPTVSWVKDGKPLDHYDVPIIALISGGNLLISNVRKSDEGTYACVATNMVGERESIPARLSV 222 (1281)
T ss_pred ccccceeEEeccCCCCCCCCcceeecCCCccccccceeEEEecCCcEEEeccccCCCceeeeeecccccccccccceeee
Confidence 5679999999996 888999999999999987 5577778889999999999999999999999999997665 89999
Q ss_pred EeCCceeeeCCCceEEecCCcEEEEEEecccCCcceeEEEeeCCEEeccccCCccCCCeeEecCCeEEEeecCCCCCEeE
Q psy12061 78 LHGPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEITNASFADAGEY 157 (626)
Q Consensus 78 ~~~p~~~~~~~~~~~v~~g~~~~l~C~~~~~p~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y 157 (626)
...|-+.. .|.+..|..|..+.|.|.+.|+|.|.+ .|.+++..+.... ..+...+.+|.|..++..|.|.|
T Consensus 223 ~e~P~f~~-rp~~~~v~~g~~~~f~c~v~GdP~P~V--rwkk~~~~~P~~r------y~i~~d~qtl~i~r~tp~deg~y 293 (1281)
T KOG4222|consen 223 QEKPWFWK-RPKDLAVLVGAAAEFDCRVGGDPQPTV--RWKKDDPSLPRSR------YSILDDTQTLRIDRVTPTDEGTY 293 (1281)
T ss_pred ccCCcccc-ccccceeecccccccccccCCCCCCce--eeeccCCCCCccc------eeeeeccccccccccCCCcccce
Confidence 99888776 588999999999999999999999865 7888777776542 45555678999999999999999
Q ss_pred EEEEEeCCCceEEEEEEEEeCCCCCCC-------------ceEEEEEeccceEEEEecCCC------------CC-C---
Q psy12061 158 ECVVKSTVGKISTKTTVIVEGPPGLPG-------------GVQVVEVHKTSATIQWTDGAT------------NG-R--- 208 (626)
Q Consensus 158 ~C~a~n~~g~~~~~~~l~v~~~P~~p~-------------~~~~~~~~~~~~~l~W~~~~~------------~~-~--- 208 (626)
.|.+.|..|..+..+.++|+.+|..-. .+.|...+...-.+.|.+... ++ .
T Consensus 294 ~C~a~n~vG~l~asa~ltV~apP~f~kkp~dq~v~lg~~vt~pc~~~gnP~PavfW~keg~q~llf~~~p~~~~~r~svs 373 (1281)
T KOG4222|consen 294 VCPAENLVGGLEASATLTVQAPPSFGKKPRDQKVALGGTVTFPCETLGNPPPAVFWLKEGSQDLLFSASPPSSNGRGSVS 373 (1281)
T ss_pred eeeccccccccccccceEEecCcccccccCccccccCceEEeeeecCCCCCcceEEeccCcceecccCCCCCcCccceec
Confidence 999999999999999999999886421 123334444555555553210 00 0
Q ss_pred ------------cccEEEEEEe----------------------------------------------------ecCCCC
Q psy12061 209 ------------PITHYKIIAR----------------------------------------------------TNWNST 224 (626)
Q Consensus 209 ------------~~~~y~v~~~----------------------------------------------------~~~~~~ 224 (626)
.-.+|.+... ......
T Consensus 374 ~~g~L~it~v~~~d~g~Yvcq~~~~~~ss~~~a~~~qt~~~~~~rPpp~i~~g~~nQtl~v~s~a~l~c~atg~P~p~i~ 453 (1281)
T KOG4222|consen 374 PTGTLTITNVRQSDEGYYVCQTQTSAGSSLTKAYLEQTDVLTDSRPPPIIEQGPANQTLPVGSTASLPCSATGAPTPNIS 453 (1281)
T ss_pred CCCCcccccccccccceEeecccccccccccceeEEEEeeeccCCCCceeeecccccccccCcccccChhhhCCCCCCch
Confidence 0011211100 000111
Q ss_pred ceEeecceeeee-eeccCCceeEEEEeeccCCceEEEEEEEecCCccCCCCCCCCccc----------CCCCCCCCCCce
Q psy12061 225 WFNVSEHVIGKE-VDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPSPQYN----------TPADKPYQAPSR 293 (626)
Q Consensus 225 w~~~~~~~~~~~-~~~~~~~~~~~i~~~l~~~~~y~~~v~a~n~~g~~~~s~~~~~~~----------~~~~~p~~~p~~ 293 (626)
|.+..-.+.... ........+..+.+ +.-.+.|.|+|.|.+..|.+.++....... ..+...+.+|..
T Consensus 454 wl~dg~~v~~~d~~~s~~~~~~l~i~d-l~~~DtG~YTc~as~~~ges~wSatl~v~~~~~s~q~~r~~D~S~~pS~p~~ 532 (1281)
T KOG4222|consen 454 WLKDGCNVMNPDSRISQQEIGSLRIRD-LKGPDTGRYTCIASDESGESTWSATLTVEKAGSSQQFCRCEDPSALPSPPGT 532 (1281)
T ss_pred hhhcccccccCCcccceeeeceeeeee-eecCCCcceeeeccCcccccccceeeEhhhcCcccccccCCChhhCCCCCCC
Confidence 221111110000 00011223455555 888899999999999999887765432111 111122345555
Q ss_pred eEeecCCcCeEEEEEeeCCCCCcccCcceEEEEEEecC-CCcceeeeeeeecceeeEEEEeCCCcceeEEEEEEEEecCC
Q psy12061 294 IGGGGGKIGDLSISWEPLPREKQNAPNIYYKIFWRKKN-DTEFQSETLKEYGNVGIAVVRIPSEFYYTEYEVKVQAINDV 372 (626)
Q Consensus 294 ~~~~~~~~~~v~l~W~~~~~~~~~~~~~~y~i~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~L~p~~~Y~~~v~a~n~~ 372 (626)
..+...+.++++|+|.+.. ..+..++.+|.+++...+ ...|.... .....+.+.|.+|+|+..|.|.|+|.|..
T Consensus 533 p~v~~v~~~~v~LsW~~~s-~sg~vP~s~yiieafs~~~~etw~~ta----~~v~~t~~~I~gL~P~~sylf~vRa~n~~ 607 (1281)
T KOG4222|consen 533 PGVVNVSRTSVTLSWQPTS-PSGAVPASGYIIEAFSPDLGETWQTTA----GRVKTTTYAIRGLKPNLSYLFLVRAENEQ 607 (1281)
T ss_pred CccccCCCceEEecccCCC-CCCccccchhHHHHhhhhhcccccccc----cccccceeeecCcCccceeeeeeeccccc
Confidence 5667778899999999843 246788999999887655 56665432 23355678899999999999999999999
Q ss_pred CCCCCCccEE-EEccCCCCCCCC------------CceE---EEeeecceEEEEeeeccccccccceeeEEEEEEEEecC
Q psy12061 373 GPGPESEVVT-IFSAEDMPQVAP------------QGVF---SRGFNSTAINVTWNPIELIRENIRGRLIGHRIKYWKED 436 (626)
Q Consensus 373 g~~~~s~~~~-~~t~~~~p~~~p------------~~~~---~~~~~~~si~l~W~~~~~~~~~~~~~i~~Y~v~~~~~~ 436 (626)
|.+.++.... ++|.+..+..+- ..++ ...++.+++.+.|..+...+. ..|.+|+|.|+...
T Consensus 608 Gis~Ps~~S~~vrta~a~~~~a~ad~~k~~~~ls~~l~~l~~~~~L~asslr~~w~~~kq~~~---~~i~g~~I~~r~~~ 684 (1281)
T KOG4222|consen 608 GISDPSTSSDPVRTAPADAAAAGADHQKVQRELSNELLRLSNPNVLNASSLRLGWTKDKQHGS---QYIQGYRISYRSLG 684 (1281)
T ss_pred cccCCcccCCccccCCCChhhhhhhHHHHHHhhcccceeeccccccchhheeeeeeeecccCc---ccccceEEEeccCc
Confidence 9877665442 333322211000 0111 234678899999998775332 67999999998777
Q ss_pred CCc-cceEEEEecCccceEEEeCCccCceEEEEEEEeeCCC---CCCCCccEEEeecCCCCCCCCceE---EEeeeCCCE
Q psy12061 437 NPE-ETAVYYLSRTTRNWALIVGLQPDTKYYVKVMAYNNAG---EGPESERYLERTYRKAPQKPPSAV---HIKGINPTT 509 (626)
Q Consensus 437 ~~~-~~~~~~~~~~~~~~~~i~~L~p~t~Y~v~V~a~~~~g---~s~~s~~~~~~t~~~~p~~~p~~l---~~~~~~~~~ 509 (626)
... ......+.......+.+.+|.|++.|+|.++.+...| .|..|+.+.+.|.+..|+.+|..+ +....+.++
T Consensus 685 ~~~a~~s~~~v~~~t~~s~v~~nl~p~t~ye~f~~Pf~~~~~s~~g~pS~sk~alt~e~~PSapp~~~~~~s~~~~n~Ta 764 (1281)
T KOG4222|consen 685 SQLAQWSNAGVTVPTPESVVVPNLKPGTNYEFFVRPFFPHGYSIQGAPSNSKTALTLEEPPSAPPQGVQHVSKGSYNGTA 764 (1281)
T ss_pred cccccccccceeccCCcceeccccCCCccceeeccCccCCCcceecCCcccccccccccCCCCCCCCccccccccCCCce
Confidence 621 2222233344445689999999999999999999855 467788889999999999999994 455558899
Q ss_pred EEEEEeecCCCCCCCceeeEEEEEEEeccCCccccceeeecCccceEEecCCCCCceEEEEEEEEecCCCCCCCCCcEEE
Q psy12061 510 VHVTWRYVSPSFEEEPIIGYKVRVWEVDQDMSRANDTIIPVGNTLDADIVDLSPGKRYHMRVLAFSNGGDGRMSSPAITF 589 (626)
Q Consensus 510 ~~l~W~~~~~~~~~~~i~~Y~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~p~~~Y~~~V~a~~~~G~g~~s~~~~~~ 589 (626)
..|+|.+++.+..++.+.+|.|........ ........+....+.+|.+|.+|..|.|+|.|.|.+|.|+.+.|..++
T Consensus 765 ~~Vsw~~pp~d~~ng~~qg~ki~~~~~e~t--r~h~n~t~~a~~~sv~i~~l~~g~ay~vtv~a~T~aGvG~~s~p~~~~ 842 (1281)
T KOG4222|consen 765 GSVSWAPPPADVQNGILQGYKIECSGGEKT--RIHINKTTNARTGSVTIGNLVTGIAYSVTVAARTGAGVGVKSPPQPIV 842 (1281)
T ss_pred eeEEecCCcccccCCcccceeEEeecCccc--cccccccccCCCCceEeccccccceEEEEEeeecCCccCCCCCCeeee
Confidence 999999987778899999999965433321 112223334677889999999999999999999999999999887655
Q ss_pred eec
Q psy12061 590 QMG 592 (626)
Q Consensus 590 ~~~ 592 (626)
.-.
T Consensus 843 ~~~ 845 (1281)
T KOG4222|consen 843 FDT 845 (1281)
T ss_pred cCC
Confidence 533
No 6
>KOG4222|consensus
Probab=100.00 E-value=1.7e-37 Score=307.01 Aligned_cols=460 Identities=27% Similarity=0.378 Sum_probs=355.4
Q ss_pred CCCCceEEEEeeeCCCCCCeeEEEeCCEEc--------cCCCcEEEccCCcEEEccCCCCCCEEEEEEEEcCCCCceeeE
Q psy12061 2 AGEGGNVTIFCNPEAAPKPKFVWKKDGNII--------GSGGRRKIFENGNLLISPVSRDDSGIYSCTATNVHGMDESKG 73 (626)
Q Consensus 2 ~~~G~~~~l~C~~~g~p~p~i~W~~~~~~i--------~~~~~~~~~~~g~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~ 73 (626)
|..|..++|.|.+.|+|.|.+.|.|.|... ..++|-.+...|+|.|.+|+..|.|.|.|...+..|.....+
T Consensus 327 v~lg~~vt~pc~~~gnP~PavfW~keg~q~llf~~~p~~~~~r~svs~~g~L~it~v~~~d~g~Yvcq~~~~~~ss~~~a 406 (1281)
T KOG4222|consen 327 VALGGTVTFPCETLGNPPPAVFWLKEGSQDLLFSASPPSSNGRGSVSPTGTLTITNVRQSDEGYYVCQTQTSAGSSLTKA 406 (1281)
T ss_pred cccCceEEeeeecCCCCCcceEEeccCcceecccCCCCCcCccceecCCCCcccccccccccceEeecccccccccccce
Confidence 346889999999999999999999977642 245677777788999999999999999999999999877776
Q ss_pred EEEEEe------CCceeeeCCCceEEecCCcEEEEEEecccCCcceeEEEeeCCEEeccccCCccCCCeeE-ecCCeEEE
Q psy12061 74 RLIVLH------GPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNIN-IDGGLLEI 146 (626)
Q Consensus 74 ~l~v~~------~p~~~~~~~~~~~v~~g~~~~l~C~~~~~p~p~~~i~W~~~~~~~~~~~~~~~~~~~~~-~~~~~l~i 146 (626)
.+.+.. +|.++...+.+.+..++..+.|.|.+.+.|.|.+ .|+++|..+..-+ .++. ...+.|+|
T Consensus 407 ~~~qt~~~~~~rPpp~i~~g~~nQtl~v~s~a~l~c~atg~P~p~i--~wl~dg~~v~~~d------~~~s~~~~~~l~i 478 (1281)
T KOG4222|consen 407 YLEQTDVLTDSRPPPIIEQGPANQTLPVGSTASLPCSATGAPTPNI--SWLKDGCNVMNPD------SRISQQEIGSLRI 478 (1281)
T ss_pred eEEEEeeeccCCCCceeeecccccccccCcccccChhhhCCCCCCc--hhhhcccccccCC------cccceeeeceeee
Confidence 665543 7788888899999999999999999999998865 8999998887543 3333 35689999
Q ss_pred eecCCCCCEeEEEEEEeCCCceEEEEEEEEeC---------------CCCCCCceEEEEEeccceEEEEecCCC-CCCcc
Q psy12061 147 TNASFADAGEYECVVKSTVGKISTKTTVIVEG---------------PPGLPGGVQVVEVHKTSATIQWTDGAT-NGRPI 210 (626)
Q Consensus 147 ~~~~~~d~g~Y~C~a~n~~g~~~~~~~l~v~~---------------~P~~p~~~~~~~~~~~~~~l~W~~~~~-~~~~~ 210 (626)
.++...|.|.|+|.+.+..|+...++.|.|.. .|.+|....+..+..+++.|+|.+... +..++
T Consensus 479 ~dl~~~DtG~YTc~as~~~ges~wSatl~v~~~~~s~q~~r~~D~S~~pS~p~~p~v~~v~~~~v~LsW~~~s~sg~vP~ 558 (1281)
T KOG4222|consen 479 RDLKGPDTGRYTCIASDESGESTWSATLTVEKAGSSQQFCRCEDPSALPSPPGTPGVVNVSRTSVTLSWQPTSPSGAVPA 558 (1281)
T ss_pred eeeecCCCcceeeeccCcccccccceeeEhhhcCcccccccCCChhhCCCCCCCCccccCCCceEEecccCCCCCCcccc
Confidence 99999999999999999999999999998863 356677778888999999999998765 45788
Q ss_pred cEEEEEEeec-CCCCceEeecceeeeeeeccCCceeEEEEeeccCCceEEEEEEEecCCccCCCCCCCCcccCCCCCCCC
Q psy12061 211 THYKIIARTN-WNSTWFNVSEHVIGKEVDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPSPQYNTPADKPYQ 289 (626)
Q Consensus 211 ~~y~v~~~~~-~~~~w~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~y~~~v~a~n~~g~~~~s~~~~~~~~~~~~p~~ 289 (626)
..|.+++... -...|....... ..+.+.|.. |.|...|.|.|+|.|+.|.+.++..+..+++.+..+..
T Consensus 559 s~yiieafs~~~~etw~~ta~~v---------~~t~~~I~g-L~P~~sylf~vRa~n~~Gis~Ps~~S~~vrta~a~~~~ 628 (1281)
T KOG4222|consen 559 SGYIIEAFSPDLGETWQTTAGRV---------KTTTYAIRG-LKPNLSYLFLVRAENEQGISDPSTSSDPVRTAPADAAA 628 (1281)
T ss_pred chhHHHHhhhhhccccccccccc---------ccceeeecC-cCccceeeeeeeccccccccCCcccCCccccCCCChhh
Confidence 8899876543 457887766543 334566655 99999999999999999999888777666665433211
Q ss_pred CC------------cee---EeecCCcCeEEEEEeeCCCCCcccCcceEEEEEEecC--CCcceeeeeeeecceeeEEEE
Q psy12061 290 AP------------SRI---GGGGGKIGDLSISWEPLPREKQNAPNIYYKIFWRKKN--DTEFQSETLKEYGNVGIAVVR 352 (626)
Q Consensus 290 ~p------------~~~---~~~~~~~~~v~l~W~~~~~~~~~~~~~~y~i~~~~~~--~~~~~~~~~~~~~~~~~~~~~ 352 (626)
.- ..+ .....+..+|.+.|.. +.......+.+|+|.|+..+ ...|....+... ....+.
T Consensus 629 a~ad~~k~~~~ls~~l~~l~~~~~L~asslr~~w~~-~kq~~~~~i~g~~I~~r~~~~~~a~~s~~~v~~~---t~~s~v 704 (1281)
T KOG4222|consen 629 AGADHQKVQRELSNELLRLSNPNVLNASSLRLGWTK-DKQHGSQYIQGYRISYRSLGSQLAQWSNAGVTVP---TPESVV 704 (1281)
T ss_pred hhhhHHHHHHhhcccceeeccccccchhheeeeeee-ecccCcccccceEEEeccCccccccccccceecc---CCccee
Confidence 10 011 1234467899999998 34445667899999999876 345555544432 234567
Q ss_pred eCCCcceeEEEEEEEEecCCC---CCCCCccEEEEccCCCCCCCCCc---eEEEeeecceEEEEeeeccccccccceeeE
Q psy12061 353 IPSEFYYTEYEVKVQAINDVG---PGPESEVVTIFSAEDMPQVAPQG---VFSRGFNSTAINVTWNPIELIRENIRGRLI 426 (626)
Q Consensus 353 ~~~L~p~~~Y~~~v~a~n~~g---~~~~s~~~~~~t~~~~p~~~p~~---~~~~~~~~~si~l~W~~~~~~~~~~~~~i~ 426 (626)
+.+|.|++.|+|.++-+...| .|..|....+.|.+..|..+|.. ++....+.+++.|+|.++..... +|.+.
T Consensus 705 ~~nl~p~t~ye~f~~Pf~~~~~s~~g~pS~sk~alt~e~~PSapp~~~~~~s~~~~n~Ta~~Vsw~~pp~d~~--ng~~q 782 (1281)
T KOG4222|consen 705 VPNLKPGTNYEFFVRPFFPHGYSIQGAPSNSKTALTLEEPPSAPPQGVQHVSKGSYNGTAGSVSWAPPPADVQ--NGILQ 782 (1281)
T ss_pred ccccCCCccceeeccCccCCCcceecCCcccccccccccCCCCCCCCccccccccCCCceeeEEecCCccccc--CCccc
Confidence 899999999999999987744 56778888889999999988988 45556678899999999865444 59999
Q ss_pred EEEEEEEecCCCccceEEEEecCccceEEEeCCccCceEEEEEEEeeCCCCCCCCccEEE
Q psy12061 427 GHRIKYWKEDNPEETAVYYLSRTTRNWALIVGLQPDTKYYVKVMAYNNAGEGPESERYLE 486 (626)
Q Consensus 427 ~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~v~V~a~~~~g~s~~s~~~~~ 486 (626)
+|.|........... ..........+.+|.+|.++..|.|+|.+.+.+|.|+.+.....
T Consensus 783 g~ki~~~~~e~tr~h-~n~t~~a~~~sv~i~~l~~g~ay~vtv~a~T~aGvG~~s~p~~~ 841 (1281)
T KOG4222|consen 783 GYKIECSGGEKTRIH-INKTTNARTGSVTIGNLVTGIAYSVTVAARTGAGVGVKSPPQPI 841 (1281)
T ss_pred ceeEEeecCcccccc-ccccccCCCCceEeccccccceEEEEEeeecCCccCCCCCCeee
Confidence 999987433321111 11122234456889999999999999999999999987665433
No 7
>KOG4194|consensus
Probab=99.92 E-value=1.1e-23 Score=196.29 Aligned_cols=248 Identities=22% Similarity=0.377 Sum_probs=184.7
Q ss_pred CCCCceEEEEeeeCCC--CCCeeEEEeCCEEccC----C-------CcEEEccC-----CcEEEccCCCCCCEEEEEEEE
Q psy12061 2 AGEGGNVTIFCNPEAA--PKPKFVWKKDGNIIGS----G-------GRRKIFEN-----GNLLISPVSRDDSGIYSCTAT 63 (626)
Q Consensus 2 ~~~G~~~~l~C~~~g~--p~p~i~W~~~~~~i~~----~-------~~~~~~~~-----g~L~i~~v~~~d~G~Y~C~a~ 63 (626)
+..|++++|+|.+.+. .+-+|.|.|+...... + .|.-.+.+ +-|.+.+|+..|+|.|+|++.
T Consensus 515 al~g~nirftC~a~sssasplsi~WR~dnevq~rv~ved~a~~~~q~r~~~~~e~~~~~~~L~L~nVt~td~grYQCVvt 594 (873)
T KOG4194|consen 515 ALIGENIRFTCNAYSSSASPLSIEWRKDNEVQPRVDVEDFATFLSQNRNGTFGEREEYTAILHLDNVTFTDEGRYQCVVT 594 (873)
T ss_pred hhhccceEEEEEeccCCCCCceeEeeeccccCcccchhcchhhhhhhccCccchhhhhhheeeeeeeecccCceEEEEEe
Confidence 3469999999999773 3449999998763321 1 11111111 249999999999999999999
Q ss_pred cCCCCcee-eEEEEEEeCCceeeeCCCceEEecCCcEEEEEEecccCCcceeEEEeeCCEE-eccccCCccCCCeeEe--
Q psy12061 64 NVHGMDES-KGRLIVLHGPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVR-IGNMDLNELETPNINI-- 139 (626)
Q Consensus 64 n~~g~~~~-~~~l~v~~~p~~~~~~~~~~~v~~g~~~~l~C~~~~~p~p~~~i~W~~~~~~-~~~~~~~~~~~~~~~~-- 139 (626)
|.+|+..+ .+.|.|...|.|.. .|.++++..|+.+.|.|.+.|.|.|+| .|.|+|.. +... ...|..+
T Consensus 595 N~FGStysqk~KltV~~~PsFtk-tP~dltl~tg~mArl~CaAtG~P~PeI--awqkdggtdFPAA-----~eRRl~Vmp 666 (873)
T KOG4194|consen 595 NHFGSTYSQKAKLTVNQAPSFTK-TPEDLTLRTGQMARLECAATGHPRPEI--AWQKDGGTDFPAA-----RERRLHVMP 666 (873)
T ss_pred cccCcchhheeEEEeeccCcccc-CcccceeecccceeeeeeccCCCCcce--eehhcCCCCCchh-----hhheeeecC
Confidence 99999776 48999999998876 689999999999999999999999865 89998766 3322 2244433
Q ss_pred cCCeEEEeecCCCCCEeEEEEEEeCCCceEEEEEEEEeCCCCCCCc--eEEEEEeccceEEEEecCCCCCCcccEEEEEE
Q psy12061 140 DGGLLEITNASFADAGEYECVVKSTVGKISTKTTVIVEGPPGLPGG--VQVVEVHKTSATIQWTDGATNGRPITHYKIIA 217 (626)
Q Consensus 140 ~~~~l~i~~~~~~d~g~Y~C~a~n~~g~~~~~~~l~v~~~P~~p~~--~~~~~~~~~~~~l~W~~~~~~~~~~~~y~v~~ 217 (626)
++..+-|.|+..+|.|.|+|+|.|.+|..++.+.|.|.+.|.+-.. .+. ..-..++.|+|..... +..
T Consensus 667 edd~f~Itnvk~eD~GiYtC~A~n~AG~isanAtL~V~e~p~f~~PL~~~~-V~~get~vlqC~a~~~---~a~------ 736 (873)
T KOG4194|consen 667 EDDVFFITNVKIEDQGIYTCTAQNVAGQISANATLTVLETPSFSIPLEDQL-VVVGETLVLQCLAEGA---PAD------ 736 (873)
T ss_pred CCCEEEEecccccccceeEEeeeccccceeeceEEEEecCCcccccccceE-EEecceEEEEEecCCC---CCC------
Confidence 7789999999999999999999999999999999999998875332 233 3345678888874322 221
Q ss_pred eecCCCCceEeecceeeeeeeccCCceeEEEEeeccCCceEEEEEEEecCCcc
Q psy12061 218 RTNWNSTWFNVSEHVIGKEVDRYTGRKEASIENVLVPWSTYEFKVIAGNELGY 270 (626)
Q Consensus 218 ~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~y~~~v~a~n~~g~ 270 (626)
....|++....+...+.....+..++.+..+-.-.+.+.|+|.-.|..|.
T Consensus 737 ---pr~~W~k~d~pil~t~rh~f~d~dQllvv~~~~~~daG~yTcem~~~~~~ 786 (873)
T KOG4194|consen 737 ---PRLEWFKEDKPILITERHTFPDGDQLLVVKENLVEDAGIYTCEMSNTLGT 786 (873)
T ss_pred ---ccccccCCCCceEEeecccCCCCCeEEEEEehhhhhcceEEEEEEeeccc
Confidence 23467777776666655555555555555546677888899988887664
No 8
>PHA02785 IL-beta-binding protein; Provisional
Probab=99.90 E-value=9.8e-22 Score=184.31 Aligned_cols=249 Identities=19% Similarity=0.207 Sum_probs=157.9
Q ss_pred CCCCCceEEEEeee-----CCCCCCeeEEEeCCEEccCCCcEEEccCCc-EEEccCCCCCCEEEEEEEEcCCCCceeeEE
Q psy12061 1 YAGEGGNVTIFCNP-----EAAPKPKFVWKKDGNIIGSGGRRKIFENGN-LLISPVSRDDSGIYSCTATNVHGMDESKGR 74 (626)
Q Consensus 1 ~~~~G~~~~l~C~~-----~g~p~p~i~W~~~~~~i~~~~~~~~~~~g~-L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~ 74 (626)
++.+|+.+.|.|.+ .|.|.++|+|+|+|... .+.....+|+ |.|.++..+|+|.|+|.|.|..|.....+.
T Consensus 37 ~~~~ge~~~l~C~~~~~~~~g~p~~~i~W~K~g~~~---~~~~~~~~g~~l~i~~~~~~DsG~Y~C~a~N~~g~~~~s~~ 113 (326)
T PHA02785 37 MELENEPVILPCPQINTLSSGYNILDILWEKRGADN---DRIIPIDNGSNMLILNPTQSDSGIYICITKNETYCDMMSLN 113 (326)
T ss_pred hhhcCCCEEEECCCccccccCCCCceEEEEECCCcc---ceEEEccCCceEEEcccCcccCeEEEEEEECCCcceEEEEE
Confidence 46789999999997 78899999999998532 2444455564 999999999999999999999998888888
Q ss_pred EEEEeCC-ceeeeCCCceEEecCCcEEEEEEe-----cccCCcceeEEEeeCCEEeccccCCccCCCeeEe-cCCeEEEe
Q psy12061 75 LIVLHGP-SYYEQLPPKITIAAHRNLQLRCSA-----HTEELLDVAYIWTHNGVRIGNMDLNELETPNINI-DGGLLEIT 147 (626)
Q Consensus 75 l~v~~~p-~~~~~~~~~~~v~~g~~~~l~C~~-----~~~p~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~-~~~~l~i~ 147 (626)
|.|.... ..+...+....+.+|..+.|.|.. .+.|. ++++|+++.. +.. .++.. .++.|.|.
T Consensus 114 L~V~~~~~~~~~~~~~~~~~~~g~~~~i~C~~~~~~~~~~~~--~~i~W~k~~~-~~~--------~r~~~~~~~~L~i~ 182 (326)
T PHA02785 114 LTIVSVSESNIDLISYPQIVNERSTGEMVCPNINAFIASNVN--ADIIWSGHRR-LRN--------KRLKQRTPGIITIE 182 (326)
T ss_pred EEEEecCCCccceeeccceecccCcEEEECCChhhcccCCCC--ceEEEccCCc-cCC--------cceEecCCCeEEEe
Confidence 8886532 112122334567799999999972 24454 4669998653 221 33333 45789999
Q ss_pred ecCCCCCEeEEEEEEeCCCceEE----EEEEEEeCCCCCC-----CceEEEEEeccceEEEEecCCCCCCcccEEEEEEe
Q psy12061 148 NASFADAGEYECVVKSTVGKIST----KTTVIVEGPPGLP-----GGVQVVEVHKTSATIQWTDGATNGRPITHYKIIAR 218 (626)
Q Consensus 148 ~~~~~d~g~Y~C~a~n~~g~~~~----~~~l~v~~~P~~p-----~~~~~~~~~~~~~~l~W~~~~~~~~~~~~y~v~~~ 218 (626)
+++.+|+|.|+|.|.|..|.... .+.|.|..+..+| ..+. ...+..+.|.|....... +. .=.+.|.
T Consensus 183 ~v~~~d~G~Y~C~~~n~~g~~~~~~t~~v~l~V~~~~~pp~~~~p~~~~--~~~G~~v~L~C~a~g~P~-~~-~~~v~W~ 258 (326)
T PHA02785 183 DVRKNDAGYYTCVLKYIYGDKTYNVTRIVKLEVRDRIIPPTMQLPEGVV--TSIGSNLTIACRVSLRPP-TT-DADVFWI 258 (326)
T ss_pred ecChhhCeEEEEEEEeccCCEEEeEEEEEEEEEeccCCCceecCCCcEE--ecCCCcEEEEEEEECCCC-CC-CceEEEE
Confidence 99999999999999999887543 3455565433332 2222 233566888887532211 11 0123333
Q ss_pred ecCCC-CceE-e-ecceeeeeeeccC------CceeEEEEeeccCCceEEEEEEEecCCc
Q psy12061 219 TNWNS-TWFN-V-SEHVIGKEVDRYT------GRKEASIENVLVPWSTYEFKVIAGNELG 269 (626)
Q Consensus 219 ~~~~~-~w~~-~-~~~~~~~~~~~~~------~~~~~~i~~~l~~~~~y~~~v~a~n~~g 269 (626)
.++.. .... . ........ ..+. ....+.|.+ +...+.+.|.|.|.|..|
T Consensus 259 kng~~i~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~L~I~~-V~~~D~G~Y~C~A~n~~~ 316 (326)
T PHA02785 259 SNGMYYEEDDEDGDGRISVAN-KIYTTDKRRVITSRLNINP-VKEEDATTFTCMAFTIPS 316 (326)
T ss_pred ECCEECCCcCCCCceeEEEec-CccccccceeeeEEEEECC-cchhcCeeeEEEEEeccC
Confidence 32210 0000 0 00000000 0000 122455655 888889999999999874
No 9
>PHA02826 IL-1 receptor-like protein; Provisional
Probab=99.88 E-value=2.1e-21 Score=169.55 Aligned_cols=152 Identities=25% Similarity=0.388 Sum_probs=115.6
Q ss_pred CCCCCceEEEEeeeCCCC-----------CCeeEEEeCCEEc--c-CCCc--------EE-EccCCcEEEccCCCCCCEE
Q psy12061 1 YAGEGGNVTIFCNPEAAP-----------KPKFVWKKDGNII--G-SGGR--------RK-IFENGNLLISPVSRDDSGI 57 (626)
Q Consensus 1 ~~~~G~~~~l~C~~~g~p-----------~p~i~W~~~~~~i--~-~~~~--------~~-~~~~g~L~i~~v~~~d~G~ 57 (626)
+|.+|++|.|.|.+.+.| .+.|.|+|++... . .+.| .. ...+++|.|.+++.+|+|.
T Consensus 33 ~v~eGe~v~L~C~~~~~~~~~~~~~~~~~~~~V~W~k~~s~~~v~~~~~~~~~~~i~~~~~~~r~~~L~I~~v~~~DsG~ 112 (227)
T PHA02826 33 YAKFGDPMVLLCTGKHYKKSIFFDKTFITSYNVTWSKTDSLAFVRDSGARTKIKKITHNEIGDRSENLWIGNVINIDEGI 112 (227)
T ss_pred EecCCCCEEEEccccccccccccccccCCCccEEEEeCCeEEEEEcCCCccccccccccceecCCCeEEECCCChHHCEE
Confidence 478999999999997754 3499999998652 1 1121 01 1125689999999999999
Q ss_pred EEEEEEcCCCCceeeEEEEEEeCCceeeeCCCceEEecCCcEEEEEEecccC---CcceeEEEeeCCEEeccccCCccCC
Q psy12061 58 YSCTATNVHGMDESKGRLIVLHGPSYYEQLPPKITIAAHRNLQLRCSAHTEE---LLDVAYIWTHNGVRIGNMDLNELET 134 (626)
Q Consensus 58 Y~C~a~n~~g~~~~~~~l~v~~~p~~~~~~~~~~~v~~g~~~~l~C~~~~~p---~p~~~i~W~~~~~~~~~~~~~~~~~ 134 (626)
|+|.|.|..+.......|.|... +.+..+.+|++++|.|.+.+.+ .|..+|+|+|||.++...
T Consensus 113 Y~C~a~N~~~~~~~~i~L~V~~~-------~~~~~~~~G~~v~L~C~~~~~~~~~~p~p~I~WyKng~~l~~~------- 178 (227)
T PHA02826 113 YICTISSGNICEESTIRLTFDSG-------TINYQFNSGKDSKLHCYGTDGISSTFKDYTLTWYKNGNIVLYT------- 178 (227)
T ss_pred EEEEEEECCcceEEEEEEEEecC-------CccceEecCCCEEEEeeCCCCccccCCCceEEEEECCEECCCC-------
Confidence 99999998888877888888432 2345678999999999987542 133477999999998643
Q ss_pred CeeE--ecCCeEEEeecCCCCCEeEEEEEEeCCC
Q psy12061 135 PNIN--IDGGLLEITNASFADAGEYECVVKSTVG 166 (626)
Q Consensus 135 ~~~~--~~~~~l~i~~~~~~d~g~Y~C~a~n~~g 166 (626)
.++. ..++.|.|.+++.+|+|.|+|.|....+
T Consensus 179 ~r~~~~~~~~~L~I~~V~~~DsG~YtC~a~~~~~ 212 (227)
T PHA02826 179 DRIQLRNNNSTLVIKSATHDDSGIYTCNLRFNKN 212 (227)
T ss_pred CCEEEeCCCCEEEECcCCHHhCEEEEEEEEEeEC
Confidence 2333 2456899999999999999999987643
No 10
>KOG4194|consensus
Probab=99.86 E-value=4.8e-21 Score=178.80 Aligned_cols=170 Identities=25% Similarity=0.406 Sum_probs=142.7
Q ss_pred CCCceEEEEeeeCCCCCCeeEEEeCCEEc-c--CCCcEEEccC-CcEEEccCCCCCCEEEEEEEEcCCCCceeeEEEEEE
Q psy12061 3 GEGGNVTIFCNPEAAPKPKFVWKKDGNII-G--SGGRRKIFEN-GNLLISPVSRDDSGIYSCTATNVHGMDESKGRLIVL 78 (626)
Q Consensus 3 ~~G~~~~l~C~~~g~p~p~i~W~~~~~~i-~--~~~~~~~~~~-g~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~v~ 78 (626)
..|+.++|.|.++|.|.|+|.|.|+|..- . ...|..++.+ +...|.+|..+|+|.|+|.|.|..|...+.|.|.|.
T Consensus 625 ~tg~mArl~CaAtG~P~PeIawqkdggtdFPAA~eRRl~Vmpedd~f~Itnvk~eD~GiYtC~A~n~AG~isanAtL~V~ 704 (873)
T KOG4194|consen 625 RTGQMARLECAATGHPRPEIAWQKDGGTDFPAARERRLHVMPEDDVFFITNVKIEDQGIYTCTAQNVAGQISANATLTVL 704 (873)
T ss_pred ecccceeeeeeccCCCCcceeehhcCCCCCchhhhheeeecCCCCEEEEecccccccceeEEeeeccccceeeceEEEEe
Confidence 46999999999999999999999988752 2 2456666654 469999999999999999999999999999999999
Q ss_pred eCCceeeeCCCceEEecCCcEEEEEEecccCC-cceeEEEeeCCEEeccccCCccCCCeeEecCCeEEEeecCCCCCEeE
Q psy12061 79 HGPSYYEQLPPKITIAAHRNLQLRCSAHTEEL-LDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEITNASFADAGEY 157 (626)
Q Consensus 79 ~~p~~~~~~~~~~~v~~g~~~~l~C~~~~~p~-p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y 157 (626)
+.|.+.. |-.+..|..|+++.|.|.+.+.|. |. +.|+|+++++.-.. ...+..++.-|.+.+...+|+|.|
T Consensus 705 e~p~f~~-PL~~~~V~~get~vlqC~a~~~~a~pr--~~W~k~d~pil~t~-----rh~f~d~dQllvv~~~~~~daG~y 776 (873)
T KOG4194|consen 705 ETPSFSI-PLEDQLVVVGETLVLQCLAEGAPADPR--LEWFKEDKPILITE-----RHTFPDGDQLLVVKENLVEDAGIY 776 (873)
T ss_pred cCCcccc-cccceEEEecceEEEEEecCCCCCCcc--ccccCCCCceEEee-----cccCCCCCeEEEEEehhhhhcceE
Confidence 9987765 567889999999999999999887 54 48999999987542 123334667889999999999999
Q ss_pred EEEEEeCCCceEEEEEEEEeCCC
Q psy12061 158 ECVVKSTVGKISTKTTVIVEGPP 180 (626)
Q Consensus 158 ~C~a~n~~g~~~~~~~l~v~~~P 180 (626)
+|...|..|.....+.+.+...+
T Consensus 777 Tcem~~~~~~~~~~i~l~~~~~~ 799 (873)
T KOG4194|consen 777 TCEMSNTLGTERIHICLLVYQKK 799 (873)
T ss_pred EEEEEeeccceeeEEEEEEeecC
Confidence 99999999988777777666544
No 11
>PHA02785 IL-beta-binding protein; Provisional
Probab=99.84 E-value=1.4e-19 Score=169.90 Aligned_cols=162 Identities=20% Similarity=0.336 Sum_probs=121.1
Q ss_pred CCCCceEEEEee-----eCCCCCCeeEEEeCCEEccCCCcEEEccCCcEEEccCCCCCCEEEEEEEEcCCCCceee----
Q psy12061 2 AGEGGNVTIFCN-----PEAAPKPKFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTATNVHGMDESK---- 72 (626)
Q Consensus 2 ~~~G~~~~l~C~-----~~g~p~p~i~W~~~~~~i~~~~~~~~~~~g~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~---- 72 (626)
+.+|+.+.|.|. ..++|+|+|.|+++.. + .+.|+....++.|.|.+|+.+|+|.|+|.|.|..|.....
T Consensus 133 ~~~g~~~~i~C~~~~~~~~~~~~~~i~W~k~~~-~-~~~r~~~~~~~~L~i~~v~~~d~G~Y~C~~~n~~g~~~~~~t~~ 210 (326)
T PHA02785 133 VNERSTGEMVCPNINAFIASNVNADIIWSGHRR-L-RNKRLKQRTPGIITIEDVRKNDAGYYTCVLKYIYGDKTYNVTRI 210 (326)
T ss_pred ecccCcEEEECCChhhcccCCCCceEEEccCCc-c-CCcceEecCCCeEEEeecChhhCeEEEEEEEeccCCEEEeEEEE
Confidence 458999999997 3567999999998653 3 4567777777899999999999999999999998875432
Q ss_pred EEEEEEe--CCceeeeCCCceEEecCCcEEEEEEecccCCc-ceeEEEeeCCEEeccccCCccCCCeeE-----------
Q psy12061 73 GRLIVLH--GPSYYEQLPPKITIAAHRNLQLRCSAHTEELL-DVAYIWTHNGVRIGNMDLNELETPNIN----------- 138 (626)
Q Consensus 73 ~~l~v~~--~p~~~~~~~~~~~v~~g~~~~l~C~~~~~p~p-~~~i~W~~~~~~~~~~~~~~~~~~~~~----------- 138 (626)
+.|.|.. .|+.+. .|....+..|++++|.|.+.+.|.+ ...+.|++||..+...+... ..++.
T Consensus 211 v~l~V~~~~~pp~~~-~p~~~~~~~G~~v~L~C~a~g~P~~~~~~v~W~kng~~i~~~~~~~--~~~~~~~~~~~~~~~~ 287 (326)
T PHA02785 211 VKLEVRDRIIPPTMQ-LPEGVVTSIGSNLTIACRVSLRPPTTDADVFWISNGMYYEEDDEDG--DGRISVANKIYTTDKR 287 (326)
T ss_pred EEEEEeccCCCceec-CCCcEEecCCCcEEEEEEEECCCCCCCceEEEEECCEECCCcCCCC--ceeEEEecCccccccc
Confidence 3455542 233232 3577888899999999999998864 24679999999886432100 01211
Q ss_pred -ecCCeEEEeecCCCCCEeEEEEEEeCCCce
Q psy12061 139 -IDGGLLEITNASFADAGEYECVVKSTVGKI 168 (626)
Q Consensus 139 -~~~~~l~i~~~~~~d~g~Y~C~a~n~~g~~ 168 (626)
...+.|.|.+++.+|+|.|+|.|.|..|..
T Consensus 288 ~~~~~~L~I~~V~~~D~G~Y~C~A~n~~~~~ 318 (326)
T PHA02785 288 RVITSRLNINPVKEEDATTFTCMAFTIPSIS 318 (326)
T ss_pred eeeeEEEEECCcchhcCeeeEEEEEeccCce
Confidence 124579999999999999999999988543
No 12
>KOG0196|consensus
Probab=99.81 E-value=2.9e-19 Score=172.70 Aligned_cols=195 Identities=23% Similarity=0.302 Sum_probs=148.4
Q ss_pred CCCCCCCceEEEeeecceEEEEeeeccccccccceeeEEEEEEEEecCCCc------cceEEEE---ecCccceEEEeCC
Q psy12061 389 MPQVAPQGVFSRGFNSTAINVTWNPIELIRENIRGRLIGHRIKYWKEDNPE------ETAVYYL---SRTTRNWALIVGL 459 (626)
Q Consensus 389 ~p~~~p~~~~~~~~~~~si~l~W~~~~~~~~~~~~~i~~Y~v~~~~~~~~~------~~~~~~~---~~~~~~~~~i~~L 459 (626)
.|+.+|.++... ++.+++.|.|.+|.+.+.. . -..|.|.+++-.... .....+. ..-......+.+|
T Consensus 330 ~PPSaP~nlis~-vn~Ts~~L~W~~P~d~GGR--~-Di~y~v~Ck~c~~~~~~C~~Cg~~V~f~P~q~gLt~~~V~v~~L 405 (996)
T KOG0196|consen 330 RPPSAPRNLISN-VNGTSLILEWSPPADTGGR--E-DITYNVICKKCGGGRGACEPCGDNVRFTPRQRGLTETSVTVSDL 405 (996)
T ss_pred CCCCccceeeee-cccceEEEEecCCcccCCC--c-ceEEEEEeeccCCCCCccccCCCCceECCCCCCcccceEEEecc
Confidence 456689898776 8999999999999876643 2 335777764433211 1111121 2234467899999
Q ss_pred ccCceEEEEEEEeeCCCC-C---CCCccEEEeecCCCCCCCCceEEEeeeCCCEEEEEEeecCCCCCCCceeeEEEEEEE
Q psy12061 460 QPDTKYYVKVMAYNNAGE-G---PESERYLERTYRKAPQKPPSAVHIKGINPTTVHVTWRYVSPSFEEEPIIGYKVRVWE 535 (626)
Q Consensus 460 ~p~t~Y~v~V~a~~~~g~-s---~~s~~~~~~t~~~~p~~~p~~l~~~~~~~~~~~l~W~~~~~~~~~~~i~~Y~i~~~~ 535 (626)
.|.+.|.|.|.|.|.... + +....+.++|....|+ +...++......+++.|+|. .|+..+|.|..|+|.|+.
T Consensus 406 ~ah~~YTFeV~AvNgVS~lsp~~~~~a~vnItt~qa~ps-~V~~~r~~~~~~~sitlsW~--~p~~png~ildYEvky~e 482 (996)
T KOG0196|consen 406 LAHTNYTFEVEAVNGVSDLSPFPRQFASVNITTNQAAPS-PVSVLRQVSRTSDSITLSWS--EPDQPNGVILDYEVKYYE 482 (996)
T ss_pred ccccccEEEEEEeecccccCCCCCcceeEEeeccccCCC-ccceEEEeeeccCceEEecC--CCCCCCCcceeEEEEEee
Confidence 999999999999997532 2 2345678889888887 55588888899999999999 788899999999999998
Q ss_pred eccCCccccceeeecCccceEEecCCCCCceEEEEEEEEecCCCCCCCCCcEEEeeccc
Q psy12061 536 VDQDMSRANDTIIPVGNTLDADIVDLSPGKRYHMRVLAFSNGGDGRMSSPAITFQMGEE 594 (626)
Q Consensus 536 ~~~~~~~~~~~~~~~~~~~~~~l~~L~p~~~Y~~~V~a~~~~G~g~~s~~~~~~~~~~~ 594 (626)
.+.+. ..........+..++.+|+|++.|-|+|+|.+.+|.|+.|.+ ..|+|.+.
T Consensus 483 k~~~e---~~~~~~~t~~~~~ti~gL~p~t~YvfqVRarT~aG~G~~S~~-~~fqT~~~ 537 (996)
T KOG0196|consen 483 KDEDE---RSYSTLKTKTTTATITGLKPGTVYVFQVRARTAAGYGPYSGK-HEFQTLPS 537 (996)
T ss_pred ccccc---cceeEEecccceEEeeccCCCcEEEEEEEEecccCCCCCCCc-eeeeecCc
Confidence 76542 223345567788999999999999999999999999999965 56777764
No 13
>cd05852 Ig5_Contactin-1 Fifth Ig domain of contactin-1. Ig5_Contactin-1: fifth Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.
Probab=99.79 E-value=5.8e-19 Score=124.74 Aligned_cols=73 Identities=42% Similarity=0.778 Sum_probs=69.4
Q ss_pred CceEEEEeeeCCCCCCeeEEEeCCEEccCCCcEEEccCCcEEEccCCCCCCEEEEEEEEcCCCCceeeEEEEE
Q psy12061 5 GGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTATNVHGMDESKGRLIV 77 (626)
Q Consensus 5 G~~~~l~C~~~g~p~p~i~W~~~~~~i~~~~~~~~~~~g~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~v 77 (626)
|++++|.|.+.|.|.|+|.|+|++..+..+.|+.+..+|+|.|.+++.+|+|.|+|.|.|..|...+.+.|.|
T Consensus 1 G~~~~l~C~~~g~P~p~v~W~k~~~~l~~~~r~~~~~~g~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~~ 73 (73)
T cd05852 1 GGRVIIECKPKAAPKPKFSWSKGTELLVNNSRISIWDDGSLEILNITKLDEGSYTCFAENNRGKANSTGVLSV 73 (73)
T ss_pred CCeEEEEEecceeCCCEEEEEeCCEecccCCCEEEcCCCEEEECcCChhHCEEEEEEEECCCCceeEEEEEEC
Confidence 7899999999999999999999999998888999999999999999999999999999999999999998865
No 14
>cd05745 Ig3_Peroxidasin Third immunoglobulin (Ig)-like domain of peroxidasin. Ig3_Peroxidasin: the third immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells which have undergone programmed cell death, and protection of the organism against non-self.
Probab=99.77 E-value=1.6e-18 Score=124.21 Aligned_cols=74 Identities=32% Similarity=0.663 Sum_probs=69.4
Q ss_pred CCceEEEEeeeCCCCCCeeEEEeCCEEccCCCcEEEccCCcEEEccCCCCCCEEEEEEEEcCCCCceeeEEEEE
Q psy12061 4 EGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTATNVHGMDESKGRLIV 77 (626)
Q Consensus 4 ~G~~~~l~C~~~g~p~p~i~W~~~~~~i~~~~~~~~~~~g~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~v 77 (626)
||+++.|.|.+.|.|.|.|.|+|+|..+..+.++.+..+++|.|.+++.+|+|.|+|.|.|..|.....+.|.|
T Consensus 1 eG~~v~l~C~~~g~P~p~i~W~k~g~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~~L~V 74 (74)
T cd05745 1 EGQTVDFLCEAQGYPQPVIAWTKGGSQLSVDRRHLVLSSGTLRISRVALHDQGQYECQAVNIVGSQRTVAQLTV 74 (74)
T ss_pred CCCeEEEEeECCEecCCEEEEEECCEECCCCCCeEEccCCeEEEeeCCHHhCEEEEEEEEeCCCceeEEEEEeC
Confidence 79999999999999999999999999998777888888889999999999999999999999999999888865
No 15
>KOG0196|consensus
Probab=99.77 E-value=7.9e-17 Score=156.13 Aligned_cols=218 Identities=22% Similarity=0.315 Sum_probs=158.7
Q ss_pred EEEEecCCccCCCCCCCCcccCCCCCCCCCCceeEeecCCcCeEEEEEeeCCCCCcccCcceEEEEEEecCCCc--ceee
Q psy12061 261 KVIAGNELGYGEPSSPSPQYNTPADKPYQAPSRIGGGGGKIGDLSISWEPLPREKQNAPNIYYKIFWRKKNDTE--FQSE 338 (626)
Q Consensus 261 ~v~a~n~~g~~~~s~~~~~~~~~~~~p~~~p~~~~~~~~~~~~v~l~W~~~~~~~~~~~~~~y~i~~~~~~~~~--~~~~ 338 (626)
.|.+.|.+-+.....+. .+-..||.+|.++... +..+++.|.|.+| .+.++-....|.|.+++.+... ...+
T Consensus 309 ~C~C~~gyyRA~~Dp~~----mpCT~PPSaP~nlis~-vn~Ts~~L~W~~P-~d~GGR~Di~y~v~Ck~c~~~~~~C~~C 382 (996)
T KOG0196|consen 309 SCTCENGYYRADSDPPS----MPCTRPPSAPRNLISN-VNGTSLILEWSPP-ADTGGREDITYNVICKKCGGGRGACEPC 382 (996)
T ss_pred cccccCCcccCCCCCCC----CCCCCCCCccceeeee-cccceEEEEecCC-cccCCCcceEEEEEeeccCCCCCccccC
Confidence 45555555443322222 2334566788888876 7789999999983 4455555677998888765221 1111
Q ss_pred -----eeeeecceeeEEEEeCCCcceeEEEEEEEEecCCCC-C---CCCccEEEEccCCCCCCCCCceEEEeeecceEEE
Q psy12061 339 -----TLKEYGNVGIAVVRIPSEFYYTEYEVKVQAINDVGP-G---PESEVVTIFSAEDMPQVAPQGVFSRGFNSTAINV 409 (626)
Q Consensus 339 -----~~~~~~~~~~~~~~~~~L~p~~~Y~~~v~a~n~~g~-~---~~s~~~~~~t~~~~p~~~p~~~~~~~~~~~si~l 409 (626)
-.+....-....+++.+|.|.+.|.|.|.|+|.... + .....+.++|...+|+ +...++....+.+++.|
T Consensus 383 g~~V~f~P~q~gLt~~~V~v~~L~ah~~YTFeV~AvNgVS~lsp~~~~~a~vnItt~qa~ps-~V~~~r~~~~~~~sitl 461 (996)
T KOG0196|consen 383 GDNVRFTPRQRGLTETSVTVSDLLAHTNYTFEVEAVNGVSDLSPFPRQFASVNITTNQAAPS-PVSVLRQVSRTSDSITL 461 (996)
T ss_pred CCCceECCCCCCcccceEEEeccccccccEEEEEEeecccccCCCCCcceeEEeeccccCCC-ccceEEEeeeccCceEE
Confidence 111223344667889999999999999999997652 1 2244567788888887 66789999999999999
Q ss_pred EeeeccccccccceeeEEEEEEEEecCCCccceEEEEecCccceEEEeCCccCceEEEEEEEeeCCCCCCCCccEEEeec
Q psy12061 410 TWNPIELIRENIRGRLIGHRIKYWKEDNPEETAVYYLSRTTRNWALIVGLQPDTKYYVKVMAYNNAGEGPESERYLERTY 489 (626)
Q Consensus 410 ~W~~~~~~~~~~~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~v~V~a~~~~g~s~~s~~~~~~t~ 489 (626)
+|..|..++ |.|..|+|+|++.+..+... .......+..++.+|+|++.|.|+|+|.+.+|.|++|..+.|.|.
T Consensus 462 sW~~p~~pn----g~ildYEvky~ek~~~e~~~--~~~~t~~~~~ti~gL~p~t~YvfqVRarT~aG~G~~S~~~~fqT~ 535 (996)
T KOG0196|consen 462 SWSEPDQPN----GVILDYEVKYYEKDEDERSY--STLKTKTTTATITGLKPGTVYVFQVRARTAAGYGPYSGKHEFQTL 535 (996)
T ss_pred ecCCCCCCC----CcceeEEEEEeeccccccce--eEEecccceEEeeccCCCcEEEEEEEEecccCCCCCCCceeeeec
Confidence 999987654 77999999999887643332 334455566999999999999999999999999999999999998
Q ss_pred CC
Q psy12061 490 RK 491 (626)
Q Consensus 490 ~~ 491 (626)
+.
T Consensus 536 ~~ 537 (996)
T KOG0196|consen 536 PS 537 (996)
T ss_pred Cc
Confidence 64
No 16
>cd05892 Ig_Myotilin_C C-terminal immunoglobulin (Ig)-like domain of myotilin. Ig_Myotilin_C: C-terminal immunoglobulin (Ig)-like domain of myotilin. Mytolin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to the latter family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Myotilin is most abundant in skeletal and cardiac muscle, and is involved in maintaining sarcomere integrity. It binds to alpha-actinin, filamin and actin. Mutations in myotilin lead to muscle disorders.
Probab=99.74 E-value=1.2e-17 Score=118.30 Aligned_cols=70 Identities=33% Similarity=0.668 Sum_probs=62.4
Q ss_pred EEEEeeeCCCCCCeeEEEeCCEEccC-CCcEEEccC--C--cEEEccCCCCCCEEEEEEEEcCCCCceeeEEEEE
Q psy12061 8 VTIFCNPEAAPKPKFVWKKDGNIIGS-GGRRKIFEN--G--NLLISPVSRDDSGIYSCTATNVHGMDESKGRLIV 77 (626)
Q Consensus 8 ~~l~C~~~g~p~p~i~W~~~~~~i~~-~~~~~~~~~--g--~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~v 77 (626)
|+|.|.+.|.|.|.|.|+|||..|.. ++|+.+..+ | +|.|.+++.+|+|.|+|.|.|..|...+.+.|.|
T Consensus 1 v~l~C~v~G~P~P~i~W~k~~~~i~~~~~r~~~~~~~~g~~~L~I~~~~~~D~G~Y~C~A~N~~G~~~~~a~L~V 75 (75)
T cd05892 1 VKLECQISAIPPPKIFWKRNNEMVQYNTDRISLYQDNSGRVTLLIKNVNKKDAGWYTVSAVNEAGVATCHARLDV 75 (75)
T ss_pred CEEEEEEEecCCCeEEEEECCEECcCCCCeEEEEEcCCCcEEEEECCCChhhCEEEEEEEEcCcCeEEEEEEEeC
Confidence 58999999999999999999999974 467777544 3 6999999999999999999999999999999875
No 17
>cd05723 Ig4_Neogenin Fourth immunoglobulin (Ig)-like domain in neogenin and similar proteins. Ig4_Neogenin: fourth immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.
Probab=99.73 E-value=2.4e-17 Score=116.70 Aligned_cols=71 Identities=28% Similarity=0.554 Sum_probs=66.2
Q ss_pred eEEEEeeeCCCCCCeeEEEeCCEEccCCCcEEEccCCcEEEccCCCCCCEEEEEEEEcCCCCceeeEEEEE
Q psy12061 7 NVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTATNVHGMDESKGRLIV 77 (626)
Q Consensus 7 ~~~l~C~~~g~p~p~i~W~~~~~~i~~~~~~~~~~~g~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~v 77 (626)
+++|.|.+.|.|.|.|.|+|+|.++....++.+..++.|.|.+++.+|+|.|+|.|.|..|...+.+.|.|
T Consensus 1 ~v~l~C~~~G~P~p~v~W~k~g~~~~~~~~~~~~~~~~l~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~L~V 71 (71)
T cd05723 1 DVIFECEVTGKPTPTVKWVKNGDMVIPSDYFKIVKEHNLQVLGLVKSDEGFYQCIAENDVGNVQASAQLII 71 (71)
T ss_pred CEEEEEEEEEeCCCEEEEEECCeECCCCCCEEEEecCCEEEEcCCcccCEEEEEEEEcCCCEEEEEEEEEC
Confidence 58999999999999999999999998878888888889999999999999999999999999999888865
No 18
>cd05762 Ig8_MLCK Eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK). Ig8_MLCK: the eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK). MLCK is a key regulator of different forms of cell motility involving actin and myosin II. Agonist stimulation of smooth muscle cells increases cytosolic Ca2+, which binds calmodulin. This Ca2+-calmodulin complex in turn binds to and activates MLCK. Activated MLCK leads to the phosphorylation of the 20 kDa myosin regulatory light chain (RLC) of myosin II and the stimulation of actin-activated myosin MgATPase activity. MLCK is widely present in vertebrate tissues; it phosphorylates the 20 kDa RLC of both smooth and nonmuscle myosin II. Phosphorylation leads to the activation of the myosin motor domain and altered structural properties of myosin II. In smooth muscle MLCK it is involved in initiating contraction. In nonmuscle cells, MLCK may participate in cell division and cell motility; it has
Probab=99.72 E-value=4.4e-17 Score=123.02 Aligned_cols=80 Identities=24% Similarity=0.385 Sum_probs=73.1
Q ss_pred CCCCceEEEEeeeCCCCCCeeEEEeCCEEccCCCcEEEcc---CCcEEEccCCCCCCEEEEEEEEcCCCCceeeEEEEEE
Q psy12061 2 AGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFE---NGNLLISPVSRDDSGIYSCTATNVHGMDESKGRLIVL 78 (626)
Q Consensus 2 ~~~G~~~~l~C~~~g~p~p~i~W~~~~~~i~~~~~~~~~~---~g~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~v~ 78 (626)
+.+|+.++|.|.+.|.|+|++.|+|||.+|..+.++.+.. .+.|.|.++..+|+|.|+|.|.|..|...+.+.|.|.
T Consensus 12 v~~G~~v~l~C~~~G~p~p~v~W~kdg~~l~~~~~~~~~~~~~~s~L~I~~~~~~D~G~Ytc~a~N~~G~~~~~~~l~V~ 91 (98)
T cd05762 12 VRAGESVELFCKVTGTQPITCTWMKFRKQIQEGEGIKIENTENSSKLTITEGQQEHCGCYTLEVENKLGSRQAQVNLTVV 91 (98)
T ss_pred EECCCEEEEEEEEcccCCCceEEEECCEEecCCCcEEEEecCCeeEEEECCCChhhCEEEEEEEEcCCCceeEEEEEEEe
Confidence 5789999999999999999999999999998777777764 3469999999999999999999999999999999998
Q ss_pred eCC
Q psy12061 79 HGP 81 (626)
Q Consensus 79 ~~p 81 (626)
..|
T Consensus 92 ~~P 94 (98)
T cd05762 92 DKP 94 (98)
T ss_pred cCC
Confidence 876
No 19
>cd04969 Ig5_Contactin_like Fifth Ig domain of contactin. Ig5_Contactin_like: Fifth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week
Probab=99.72 E-value=3.6e-17 Score=116.86 Aligned_cols=73 Identities=41% Similarity=0.763 Sum_probs=69.1
Q ss_pred CceEEEEeeeCCCCCCeeEEEeCCEEccCCCcEEEccCCcEEEccCCCCCCEEEEEEEEcCCCCceeeEEEEE
Q psy12061 5 GGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTATNVHGMDESKGRLIV 77 (626)
Q Consensus 5 G~~~~l~C~~~g~p~p~i~W~~~~~~i~~~~~~~~~~~g~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~v 77 (626)
|+++.|.|.+.|.|.|++.|+|++..+..+.++.+..+++|.|.+++.+|+|.|+|.|.|..|.....+.|.|
T Consensus 1 G~~v~L~C~~~g~P~p~v~W~k~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V 73 (73)
T cd04969 1 GGDVIIECKPKAAPKPTISWSKGTELLTNSSRICIWPDGSLEILNVTKSDEGKYTCFAENFFGKANSTGSLSV 73 (73)
T ss_pred CCeEEEEEeeeEcCCCEEEEEECCEEcccCCCEEECCCCeEEEccCChhHCEEEEEEEECCCCceEEEEEEEC
Confidence 7899999999999999999999999998888999988899999999999999999999999999999888865
No 20
>cd05868 Ig4_NrCAM Fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule). Ig4_ NrCAM: fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six IG-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. NrCAM is primarily expressed in the nervous system.
Probab=99.71 E-value=6.9e-17 Score=115.89 Aligned_cols=73 Identities=25% Similarity=0.490 Sum_probs=64.5
Q ss_pred CceEEEEeeeCCCCCCeeEEEeCCEEccCC--CcEEEccCCcEEEccCCCCCCEEEEEEEEcCCCCceeeEEEEE
Q psy12061 5 GGNVTIFCNPEAAPKPKFVWKKDGNIIGSG--GRRKIFENGNLLISPVSRDDSGIYSCTATNVHGMDESKGRLIV 77 (626)
Q Consensus 5 G~~~~l~C~~~g~p~p~i~W~~~~~~i~~~--~~~~~~~~g~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~v 77 (626)
|++++|.|.+.|.|.|+|.|+|||.+|... .+.....++.|.|.+++.+|+|.|+|.|.|..|...+.+.|.|
T Consensus 1 g~~~~l~C~a~G~P~P~i~W~k~g~~i~~~~~~~~~~~~~~~l~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~v 75 (76)
T cd05868 1 GEDGTLICRANGNPKPSISWLTNGVPIEIAPTDPSRKVDGDTIIFSKVQERSSAVYQCNASNEYGYLLANAFVNV 75 (76)
T ss_pred CCCEEEEEEeeEeCCCeEEEEECCEEccccCCCceEEecCCEEEECCCCHhhCEEEEEEEEcCCCEEEEEEEEEe
Confidence 789999999999999999999999998632 2333445568999999999999999999999999999999987
No 21
>cd05867 Ig4_L1-CAM_like Fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). Ig4_L1-CAM_like: fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.
Probab=99.70 E-value=1.2e-16 Score=115.08 Aligned_cols=73 Identities=27% Similarity=0.568 Sum_probs=64.5
Q ss_pred CceEEEEeeeCCCCCCeeEEEeCCEEccCC--CcEEEccCCcEEEccCCCCCCEEEEEEEEcCCCCceeeEEEEE
Q psy12061 5 GGNVTIFCNPEAAPKPKFVWKKDGNIIGSG--GRRKIFENGNLLISPVSRDDSGIYSCTATNVHGMDESKGRLIV 77 (626)
Q Consensus 5 G~~~~l~C~~~g~p~p~i~W~~~~~~i~~~--~~~~~~~~g~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~v 77 (626)
|++++|.|.+.|.|.|+|.|+|||.++... .......+++|.|.+++.+|+|.|+|.|.|..|...+.+.|.|
T Consensus 1 G~~v~l~C~~~G~P~p~i~W~k~g~~i~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~V 75 (76)
T cd05867 1 GETARLDCQVEGIPTPNITWSINGAPIEGTDPDPRRHVSSGALILTDVQPSDTAVYQCEARNRHGNLLANAHVHV 75 (76)
T ss_pred CCeEEEEEEeeEeCCCeEEEEECCEECCCCCCCceEEeeCCEEEECCCChhhCEEEEEEEECCCCeEEEEEEEEE
Confidence 789999999999999999999999998643 2233446788999999999999999999999999999998887
No 22
>cd05893 Ig_Palladin_C C-terminal immunoglobulin (Ig)-like domain of palladin. Ig_Palladin_C: C-terminal immunoglobulin (Ig)-like domain of palladin. Palladin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to this family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Palladin binds to alpha-actinin ezrin, vasodilator-stimulated phosphoprotein VASP, SPIN90 (DIP, mDia interacting protein), and Src. Palladin also binds F-actin directly, via its Ig3 domain. Palladin is expressed as several alternatively spliced isoforms, having various combinations of Ig-like domains, in a cell-type-specific manner. It has been suggested that palladin's different Ig-like domains may be specialized for distinct functions.
Probab=99.70 E-value=5.5e-17 Score=115.21 Aligned_cols=70 Identities=29% Similarity=0.573 Sum_probs=62.2
Q ss_pred EEEEeeeCCCCCCeeEEEeCCEEccC-CCcEEEccCC----cEEEccCCCCCCEEEEEEEEcCCCCceeeEEEEE
Q psy12061 8 VTIFCNPEAAPKPKFVWKKDGNIIGS-GGRRKIFENG----NLLISPVSRDDSGIYSCTATNVHGMDESKGRLIV 77 (626)
Q Consensus 8 ~~l~C~~~g~p~p~i~W~~~~~~i~~-~~~~~~~~~g----~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~v 77 (626)
|+|.|.+.|.|.|.|.|+|++.++.. ..|+.+..++ +|.|.++..+|+|.|+|.|.|..|...+.+.|.|
T Consensus 1 v~l~C~v~G~P~P~v~W~k~~~~l~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~a~L~V 75 (75)
T cd05893 1 VRLECRVSGVPHPQIFWKKENESLTHNTDRVSMHQDNCGYICLLIQGATKEDAGWYTVSAKNEAGIVSCTARLDV 75 (75)
T ss_pred CEEEEEEeEecCCEEEEEECCEECCCCCCeEEEEEcCCCEEEEEECCCCHHHCEEEEEEEEcCCCEEEEEEEEeC
Confidence 58999999999999999999999975 4567775543 6999999999999999999999999999998875
No 23
>cd04975 Ig4_SCFR_like Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR) and similar proteins. Ig4_SCFR_like; fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR). In addition to SCFR this group also includes the fourth Ig domain of platelet-derived growth factor receptors (PDGFR), alpha and beta, the fourth Ig domain of macrophage colony stimulating factor (M-CSF), and the Ig domain of the receptor tyrosine kinase KIT. SCFR and the PDGFR alpha and beta have similar organization: an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR, this fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth SCFR_Ig-like domain abolishes
Probab=99.70 E-value=5.4e-17 Score=122.35 Aligned_cols=77 Identities=19% Similarity=0.321 Sum_probs=67.3
Q ss_pred CCCCceEEEEeeeCC-CCCCeeEEEeCCEEccCCCcEEEccC--------CcEEEccCCCCCCEEEEEEEEcCCCCceee
Q psy12061 2 AGEGGNVTIFCNPEA-APKPKFVWKKDGNIIGSGGRRKIFEN--------GNLLISPVSRDDSGIYSCTATNVHGMDESK 72 (626)
Q Consensus 2 ~~~G~~~~l~C~~~g-~p~p~i~W~~~~~~i~~~~~~~~~~~--------g~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~ 72 (626)
+.+|++++|.|.+.| .|+|.|.|+|||.+|..+.++.+... ++|.|.++..+|+|.|+|.|.|..|.....
T Consensus 15 v~~G~~v~L~c~v~g~~P~p~v~W~Kdg~~i~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Ytc~A~N~~G~~~~t 94 (101)
T cd04975 15 VNLGENLNLVVEVEAYPPPPHINWTYDNRTLTNKLTEIVTSENESEYRYVSELKLVRLKESEAGTYTFLASNSDASKSLT 94 (101)
T ss_pred EECCCCEEEEEEEEecCCCCccEEEeCCeeCCCCcceeEEEeccCcceEEEEEEEeecCHhhCeeEEEEEECCCccEEEE
Confidence 568999999999999 89999999999999986555444332 469999999999999999999999999999
Q ss_pred EEEEEE
Q psy12061 73 GRLIVL 78 (626)
Q Consensus 73 ~~l~v~ 78 (626)
+.|.|.
T Consensus 95 ~~L~V~ 100 (101)
T cd04975 95 FELYVN 100 (101)
T ss_pred EEEEEE
Confidence 988874
No 24
>cd05851 Ig3_Contactin-1 Third Ig domain of contactin-1. Ig3_Contactin-1: Third Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.
Probab=99.70 E-value=1e-16 Score=118.70 Aligned_cols=75 Identities=29% Similarity=0.494 Sum_probs=66.9
Q ss_pred CCCCceEEEEeeeCCCCCCeeEEEeCCEEccCCCcEEEccCCcEEEccCCCCCCEEEEEEEEcCCCCceeeEEEEE
Q psy12061 2 AGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTATNVHGMDESKGRLIV 77 (626)
Q Consensus 2 ~~~G~~~~l~C~~~g~p~p~i~W~~~~~~i~~~~~~~~~~~g~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~v 77 (626)
+.+|++++|.|.+.|.|.|.|.|+|++.++....++.+ .++.|.|.+++.+|+|.|+|.|.|..|.....+.|.|
T Consensus 13 ~~~G~~v~l~C~~~G~P~P~v~W~k~~~~~~~~~~~~~-~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~V 87 (88)
T cd05851 13 ALKGQNVTLECFALGNPVPVIRWRKILEPMPATAEISM-SGAVLKIFNIQPEDEGTYECEAENIKGKDKHQARVYV 87 (88)
T ss_pred EeCCCcEEEEEEecccCCCEEEEEECCcCCCCCCEEec-CCCEEEECcCChhhCEEEEEEEEcCCCceEEEEEEEE
Confidence 56899999999999999999999999998876555443 4568999999999999999999999999999988877
No 25
>cd05762 Ig8_MLCK Eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK). Ig8_MLCK: the eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK). MLCK is a key regulator of different forms of cell motility involving actin and myosin II. Agonist stimulation of smooth muscle cells increases cytosolic Ca2+, which binds calmodulin. This Ca2+-calmodulin complex in turn binds to and activates MLCK. Activated MLCK leads to the phosphorylation of the 20 kDa myosin regulatory light chain (RLC) of myosin II and the stimulation of actin-activated myosin MgATPase activity. MLCK is widely present in vertebrate tissues; it phosphorylates the 20 kDa RLC of both smooth and nonmuscle myosin II. Phosphorylation leads to the activation of the myosin motor domain and altered structural properties of myosin II. In smooth muscle MLCK it is involved in initiating contraction. In nonmuscle cells, MLCK may participate in cell division and cell motility; it has
Probab=99.69 E-value=4.3e-16 Score=117.62 Aligned_cols=91 Identities=21% Similarity=0.383 Sum_probs=78.9
Q ss_pred eeCCCceEEecCCcEEEEEEecccCCcceeEEEeeCCEEeccccCCccCCCeeEe----cCCeEEEeecCCCCCEeEEEE
Q psy12061 85 EQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINI----DGGLLEITNASFADAGEYECV 160 (626)
Q Consensus 85 ~~~~~~~~v~~g~~~~l~C~~~~~p~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~----~~~~l~i~~~~~~d~g~Y~C~ 160 (626)
...|.+..+..|+++.|.|.+.|.|.|. +.|+|||.++.... ++.. ..+.|.|.++..+|+|.|+|.
T Consensus 4 ~~~p~~~~v~~G~~v~l~C~~~G~p~p~--v~W~kdg~~l~~~~-------~~~~~~~~~~s~L~I~~~~~~D~G~Ytc~ 74 (98)
T cd05762 4 IQFPEDMKVRAGESVELFCKVTGTQPIT--CTWMKFRKQIQEGE-------GIKIENTENSSKLTITEGQQEHCGCYTLE 74 (98)
T ss_pred EECCcCEEEECCCEEEEEEEEcccCCCc--eEEEECCEEecCCC-------cEEEEecCCeeEEEECCCChhhCEEEEEE
Confidence 3467899999999999999999998874 58999999997542 2222 357899999999999999999
Q ss_pred EEeCCCceEEEEEEEEeCCCCCCC
Q psy12061 161 VKSTVGKISTKTTVIVEGPPGLPG 184 (626)
Q Consensus 161 a~n~~g~~~~~~~l~v~~~P~~p~ 184 (626)
|.|..|...+++.|.|.++|.+|.
T Consensus 75 a~N~~G~~~~~~~l~V~~~P~pP~ 98 (98)
T cd05762 75 VENKLGSRQAQVNLTVVDKPDPPA 98 (98)
T ss_pred EEcCCCceeEEEEEEEecCCCCCC
Confidence 999999999999999999999883
No 26
>cd05894 Ig_C5_MyBP-C C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C). Ig_C5_MyBP_C : the C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C). MyBP_C consists of repeated domains, Ig and fibronectin type 3, and various linkers. Three isoforms of MYBP_C exist and are included in this group: cardiac(c), and fast and slow skeletal muscle (s) MyBP_C. cMYBP_C has insertions between and inside domains and an additional cardiac-specific Ig domain at the N-terminus. For cMYBP_C an interaction has been demonstrated between this C5 domain and the Ig C8 domain.
Probab=99.68 E-value=2.7e-16 Score=115.59 Aligned_cols=76 Identities=22% Similarity=0.409 Sum_probs=66.9
Q ss_pred CCCCceEEEEeeeCCCCCCeeEEEeCCEEccC-CCcEEEccC---CcEEEccCCCCCCEEEEEEEEcCCCCceeeEEEEE
Q psy12061 2 AGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGS-GGRRKIFEN---GNLLISPVSRDDSGIYSCTATNVHGMDESKGRLIV 77 (626)
Q Consensus 2 ~~~G~~~~l~C~~~g~p~p~i~W~~~~~~i~~-~~~~~~~~~---g~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~v 77 (626)
+.+|+.+.|.|.+.|.|.|.+.|+|++.++.. ++|+.+... +.|.|.++..+|+|.|+|.|.|..|.....+.|.|
T Consensus 7 v~~G~~v~l~c~~~G~P~P~v~W~k~~~~i~~~~~r~~~~~~~~~~~L~I~~~~~~D~G~Y~c~a~N~~G~~~~~~~l~V 86 (86)
T cd05894 7 VVAGNKLRLDVPISGEPAPTVTWSRGDKAFTETEGRVRVESYKDLSSFVIEGAEREDEGVYTITVTNPVGEDHASLFVKV 86 (86)
T ss_pred EEcCCEEEEEeeEeecCCCeEEEEECCEECccCCCeEEEEEcCCeEEEEECCCccCcCEEEEEEEEeCCCcEEEEEEEEC
Confidence 57899999999999999999999999999975 356766543 46999999999999999999999999888887765
No 27
>cd05735 Ig8_DSCAM Eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM). Ig8_DSCAM: the eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.
Probab=99.68 E-value=3.3e-16 Score=115.78 Aligned_cols=77 Identities=30% Similarity=0.476 Sum_probs=67.6
Q ss_pred CceEEEEeeeCCCCCCeeEEEeCCEEccCC-CcEEEcc--C-----CcEEEccCCCCCCEEEEEEEEcCCCCceeeEEEE
Q psy12061 5 GGNVTIFCNPEAAPKPKFVWKKDGNIIGSG-GRRKIFE--N-----GNLLISPVSRDDSGIYSCTATNVHGMDESKGRLI 76 (626)
Q Consensus 5 G~~~~l~C~~~g~p~p~i~W~~~~~~i~~~-~~~~~~~--~-----g~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~ 76 (626)
|+.++|.|.+.|.|+|.|.|+|++..|..+ +|+.+.. . .+|.|.++..+|+|.|+|.|.|..|.....+.|.
T Consensus 1 g~~~~l~C~~~g~p~~~i~W~k~~~~i~~~~~r~~~~~~~~~~~~~s~L~I~~~~~~D~G~YtC~A~N~~G~~~~~~~L~ 80 (88)
T cd05735 1 GQKKEMSCTAHGEKPIIVRWEKEDRIINPEMSRYLVSTKEVGDEVISTLQILPTVREDSGFFSCHAINSYGEDRGIIQLT 80 (88)
T ss_pred CCeEEEEEEEECCCCCEEEEeeCCEECCCCCCcEEEEEecCCCcEEEEEEECCCCcccCEEEEEEEEcCCCcceEEEEEE
Confidence 899999999999999999999999998643 4665542 1 3699999999999999999999999999999999
Q ss_pred EEeCC
Q psy12061 77 VLHGP 81 (626)
Q Consensus 77 v~~~p 81 (626)
|..+|
T Consensus 81 V~~~P 85 (88)
T cd05735 81 VQEPP 85 (88)
T ss_pred EeCCC
Confidence 98765
No 28
>cd05746 Ig4_Peroxidasin Fourth immunoglobulin (Ig)-like domain of peroxidasin. Ig4_Peroxidasin: the fourth immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted, and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells, which have undergone programmed cell death, and protection of the organism against non-self.
Probab=99.68 E-value=1.6e-16 Score=111.82 Aligned_cols=68 Identities=34% Similarity=0.593 Sum_probs=63.2
Q ss_pred EEEEeeeCCCCCCeeEEEeCCEEccCCCcEEEccCCcEEEccCCCCCCEEEEEEEEcCCCCceeeEEE
Q psy12061 8 VTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTATNVHGMDESKGRL 75 (626)
Q Consensus 8 ~~l~C~~~g~p~p~i~W~~~~~~i~~~~~~~~~~~g~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l 75 (626)
|+|.|.+.|.|.|.|.|+|+|.++....++.+..++.|.|.+++.+|+|.|+|.|.|..|.....+.|
T Consensus 1 v~L~C~~~g~P~p~i~W~k~g~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~L 68 (69)
T cd05746 1 VQIPCSAQGDPEPTITWNKDGVQVTESGKFHISPEGYLAIRDVGVADQGRYECVARNTIGYASVSMVL 68 (69)
T ss_pred CEeEecceEeCCCEEEEEECCEECCCCCCEEECCCCEEEECcCChhhCEEEEEEEECCCCcEEEEEEe
Confidence 57999999999999999999999988888888888999999999999999999999999998877765
No 29
>KOG4258|consensus
Probab=99.67 E-value=5.9e-16 Score=150.59 Aligned_cols=287 Identities=17% Similarity=0.268 Sum_probs=190.3
Q ss_pred eeEeecCCcCeEEEEEeeCCCCCcccCcceEEEEEEecC--------------CCcceeeeeeee---cc-eeeEEEEeC
Q psy12061 293 RIGGGGGKIGDLSISWEPLPREKQNAPNIYYKIFWRKKN--------------DTEFQSETLKEY---GN-VGIAVVRIP 354 (626)
Q Consensus 293 ~~~~~~~~~~~v~l~W~~~~~~~~~~~~~~y~i~~~~~~--------------~~~~~~~~~~~~---~~-~~~~~~~~~ 354 (626)
++.....+.+++.++|....+. .--...+|.+.|+... ...|....+..+ .+ .....+.+.
T Consensus 493 ~~~~~~~~~dsi~lrW~~~~~~-d~r~llg~~~~yKEaP~qNvT~~dg~~aCg~~~W~~~~v~~~~~~p~~~~~~~~~l~ 571 (1025)
T KOG4258|consen 493 QFSSTVTSADSILLRWERYQPP-DMRDLLGFLLHYKEAPFQNVTEEDGRDACGSNSWNVVDVDPPDLIPNDGTHPGFLLD 571 (1025)
T ss_pred eeeeEEeecceeEEEecccCCc-chhhhheeeEeeccCCccccceecCccccccCcceEEeccCCcCCCccccccceehh
Confidence 4445566778999999985443 2234678999887542 344554444322 11 223357789
Q ss_pred CCcceeEEEEEEEEec--CCCCC--CCCccEEEEccCCCCCCCCCceEEEeeecceEEEEeeeccccccccceeeEEEEE
Q psy12061 355 SEFYYTEYEVKVQAIN--DVGPG--PESEVVTIFSAEDMPQVAPQGVFSRGFNSTAINVTWNPIELIRENIRGRLIGHRI 430 (626)
Q Consensus 355 ~L~p~~~Y~~~v~a~n--~~g~~--~~s~~~~~~t~~~~p~~~p~~~~~~~~~~~si~l~W~~~~~~~~~~~~~i~~Y~v 430 (626)
+|+|.|.|-+-|++.. ..+.. ..|....++|..+.|. +|..+-....+++.|.|+|++|..++ |.+..|.|
T Consensus 572 ~LkP~TqYAvfVkT~t~t~~~~~~~A~S~I~YvqT~~~~Ps-pPl~~ls~snsSsqi~l~W~pP~~pN----G~lt~Ylv 646 (1025)
T KOG4258|consen 572 GLKPWTQYAVFVKTLTVTEAHEAYEAKSKIGYVQTLPDIPS-PPLDVLSKSNSSSQILLKWKPPSQPN----GNLTHYLV 646 (1025)
T ss_pred cCCccceeEEEEeeeehhhhccccccccceEEEEecCCCCC-CcchhhhccCcchheeEEecCCCCCC----CceeEEEE
Confidence 9999999999999983 22221 3477888999999998 88777777777789999999998765 66999999
Q ss_pred EEEecCCCc---------------------------cc-----------------------------------------e
Q psy12061 431 KYWKEDNPE---------------------------ET-----------------------------------------A 442 (626)
Q Consensus 431 ~~~~~~~~~---------------------------~~-----------------------------------------~ 442 (626)
.|.+..... .. .
T Consensus 647 ~wer~~~~~yl~~~nYC~~~~k~p~~~~~p~~~~ed~d~~~e~e~~~~~Cc~c~~~~~~~~~e~eea~~~~~FEd~L~n~ 726 (1025)
T KOG4258|consen 647 VWERQAEDGYLEQRNYCHKGLKLPIRADLPSFDSEDMDPLLEMEGHTGPCCSCPPTESYPQYEDEEASEQKTFEDFLHNA 726 (1025)
T ss_pred EEEeccCCchHHHhccccccccccccccCCCCchhhcchhhhhccCCCCCCCCCcccccCchhhHHHHHHHHHhhhccce
Confidence 983322100 00 0
Q ss_pred EEE----------------------------------------------EecCccceEEEeCCccCceEEEEEEEeeCCC
Q psy12061 443 VYY----------------------------------------------LSRTTRNWALIVGLQPDTKYYVKVMAYNNAG 476 (626)
Q Consensus 443 ~~~----------------------------------------------~~~~~~~~~~i~~L~p~t~Y~v~V~a~~~~g 476 (626)
... ....+...+.+.+|+.++.|.+.+.|+|..+
T Consensus 727 i~vpr~~~~krk~l~~~~n~t~~~~~~~~~~p~t~~~t~p~ei~e~~p~~~n~n~~~~vi~~Lrh~tlY~i~l~aCnh~~ 806 (1025)
T KOG4258|consen 727 IFVPRRPDRKRKSLDDVENCTRLAPTRKAEEPTTPPTTAPTEIEEPKPRLENGNKESYVISGLRHFTLYRIDLQACNHAT 806 (1025)
T ss_pred eeecccCcccccccccccceeeccccccccCCCCCCCCCCccccccCcccccccchhhhhhccccchhhhhhHhhhcccc
Confidence 000 0012223566789999999999999999876
Q ss_pred C----CCCCccEEEeecCCCC-CCCCceEEEeee-CCCEEEEEEeecCCCCCCCceeeEEEEEEEeccCCccccceeeec
Q psy12061 477 E----GPESERYLERTYRKAP-QKPPSAVHIKGI-NPTTVHVTWRYVSPSFEEEPIIGYKVRVWEVDQDMSRANDTIIPV 550 (626)
Q Consensus 477 ~----s~~s~~~~~~t~~~~p-~~~p~~l~~~~~-~~~~~~l~W~~~~~~~~~~~i~~Y~i~~~~~~~~~~~~~~~~~~~ 550 (626)
. |..+ .+..+|....- ...|..+.-... +.+++.|+|. +|.+.||.|..|.|.|+................
T Consensus 807 ~~~~cS~a~-~v~~RT~~~~~aD~i~g~v~we~~~~~~~v~l~w~--EP~~pNGli~~Y~Vk~r~~~~et~v~cvsR~~~ 883 (1025)
T KOG4258|consen 807 PKCGCSHAA-FVFARTMPTMGADDIPGPVTWECHIEMNSVILRWL--EPKEPNGLILNYEVKYRRNGDETHVECVSRMDY 883 (1025)
T ss_pred cccccchhh-hhhhccccccccccCCCceeEecccCcceEEEecC--CCCCCCccEEEEEEEEeeccCcchhhhhhhhhh
Confidence 5 3322 22334432111 112323333333 7889999999 888999999999999886544322111111222
Q ss_pred CccceEEecCCCCCceEEEEEEEEecCCCCCCCCCcEEE
Q psy12061 551 GNTLDADIVDLSPGKRYHMRVLAFSNGGDGRMSSPAITF 589 (626)
Q Consensus 551 ~~~~~~~l~~L~p~~~Y~~~V~a~~~~G~g~~s~~~~~~ 589 (626)
.......+.+|.||. |.++|+|.+-+|.|+|.++++..
T Consensus 884 ~k~~gv~l~~l~~G~-y~~~vratSlaGng~~t~~~~~~ 921 (1025)
T KOG4258|consen 884 AKAGGVYLKRLNPGN-YSVRVRATSLAGNGSWTESVIFY 921 (1025)
T ss_pred hhcCceEEEecCCCc-EEEEEEEEeeccCCCCcCCcceE
Confidence 345567889999986 99999999999999999876633
No 30
>cd05853 Ig6_Contactin-4 Sixth Ig domain of contactin-4. Ig6_Contactin-4: sixth Ig domain of the neural cell adhesion molecule contactin-4. Contactins are neural cell adhesion molecules, and are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. Highest expresson of contactin-4 is in testes, thyroid, small intestine, uterus and brain. Contactin-4 plays a role in the response of neuroblastoma cells to differentiating agents, such as retinoids. The contactin 4 gene is associated with cerebellar degeneration in spinocerebellar ataxia type 16.
Probab=99.67 E-value=3.5e-16 Score=112.61 Aligned_cols=76 Identities=20% Similarity=0.393 Sum_probs=65.1
Q ss_pred ceEEEEeeeCCC--CCCeeEEEeCCEEcc--CC-CcEEEc----cCCcEEEccCCCCCCEEEEEEEEcCCCCceeeEEEE
Q psy12061 6 GNVTIFCNPEAA--PKPKFVWKKDGNIIG--SG-GRRKIF----ENGNLLISPVSRDDSGIYSCTATNVHGMDESKGRLI 76 (626)
Q Consensus 6 ~~~~l~C~~~g~--p~p~i~W~~~~~~i~--~~-~~~~~~----~~g~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~ 76 (626)
+++.|.|.+.+. +++.|.|+|||.+|. .+ .++.+. .+|.|.|.+++..|+|.|+|.|.|..+...+++.|.
T Consensus 1 ~~~~l~C~v~~d~~l~~~~~W~~dg~~i~~~~~~~~~~~~~~~~~~~~L~I~nv~~~dsG~YtC~a~n~~~~~~a~a~L~ 80 (85)
T cd05853 1 ESIVLPCQVSHDHSLDIVFTWSFNGHLIDFQKDGDHFERVGGQDSAGDLMIRSIQLKHAGKYVCMVQTSVDKLSAAADLI 80 (85)
T ss_pred CcEEEEEEeccCCCCCcEEEEEECCEECcccCCCccEEEeccCCCCCcEEEecCCHHHCEEEEEEEEcccCceEEEEEEE
Confidence 579999999774 578999999999996 22 355552 456899999999999999999999999999999999
Q ss_pred EEeCC
Q psy12061 77 VLHGP 81 (626)
Q Consensus 77 v~~~p 81 (626)
|..||
T Consensus 81 V~~pP 85 (85)
T cd05853 81 VRGPP 85 (85)
T ss_pred EecCC
Confidence 98776
No 31
>cd05737 Ig_Myomesin_like_C C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein. Ig_Myomesin_like_C: domain similar to the C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein. Myomesin and M-protein are both structural proteins localized to the M-band, a transverse structure in the center of the sarcomere, and are candidates for M-band bridges. Both proteins are modular, consisting mainly of repetitive Ig-like and fibronectin type III (FnIII) domains. Myomesin is expressed in all types of vertebrate striated muscle; M-protein has a muscle-type specific expression pattern. Myomesin is present in both slow and fast fibers; M-protein is present only in fast fibers. It has been suggested that myomesin acts as a molecular spring with alternative splicing as a means of modifying its elasticity.
Probab=99.67 E-value=2.9e-16 Score=117.85 Aligned_cols=76 Identities=25% Similarity=0.408 Sum_probs=67.2
Q ss_pred CCCCceEEEEeeeCCCCCCeeEEEeCCEEccCCCcEEEccC-C---cEEEccCCCCCCEEEEEEEEcCCCCceeeEEEEE
Q psy12061 2 AGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFEN-G---NLLISPVSRDDSGIYSCTATNVHGMDESKGRLIV 77 (626)
Q Consensus 2 ~~~G~~~~l~C~~~g~p~p~i~W~~~~~~i~~~~~~~~~~~-g---~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~v 77 (626)
+.+|++++|.|.+.|.|.|+|.|+|+|.++...+++.+... + +|.|.+++.+|+|.|+|.|.|..|.....+.|.|
T Consensus 13 v~~G~~v~L~C~v~G~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~v~v 92 (92)
T cd05737 13 IMEGKTLNLTCTVFGDPDPEVSWLKNDQALALSDHYNVKVEQGKYASLTIKGVSSEDSGKYGIVVKNKYGGETVDVTVSV 92 (92)
T ss_pred EeCCCcEEEEEEEEecCCCeEEEEECCEECccCCCEEEEEcCCCEEEEEEccCChhhCEEEEEEEEECCCcceEEEEEeC
Confidence 57899999999999999999999999999987777666432 2 6999999999999999999999999888877764
No 32
>cd05744 Ig_Myotilin_C_like Immunoglobulin (Ig)-like domain of myotilin, palladin, and myopalladin. Ig_Myotilin_like_C: immunoglobulin (Ig)-like domain in myotilin, palladin, and myopalladin. Myotilin, palladin, and myopalladin function as scaffolds that regulate actin organization. Myotilin and myopalladin are most abundant in skeletal and cardiac muscle; palladin is ubiquitously expressed in the organs of developing vertebrates and plays a key role in cellular morphogenesis. The three family members each interact with specific molecular partners: all three bind to alpha-actinin; in addition, palladin also binds to vasodilator-stimulated phosphoprotein (VASP) and ezrin, myotilin binds to filamin and actin, and myopalladin also binds to nebulin and cardiac ankyrin repeat protein (CARP).
Probab=99.67 E-value=4e-16 Score=111.44 Aligned_cols=70 Identities=30% Similarity=0.606 Sum_probs=61.6
Q ss_pred EEEEeeeCCCCCCeeEEEeCCEEccC-CCcEEEccCC----cEEEccCCCCCCEEEEEEEEcCCCCceeeEEEEE
Q psy12061 8 VTIFCNPEAAPKPKFVWKKDGNIIGS-GGRRKIFENG----NLLISPVSRDDSGIYSCTATNVHGMDESKGRLIV 77 (626)
Q Consensus 8 ~~l~C~~~g~p~p~i~W~~~~~~i~~-~~~~~~~~~g----~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~v 77 (626)
++|.|.+.|.|.|.|.|+|||..|.. ..|+.+..++ +|.|.+++.+|+|.|+|.|.|..|...+.+.|.|
T Consensus 1 v~L~C~v~G~P~P~v~W~k~~~~i~~~~~r~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~v 75 (75)
T cd05744 1 VRLECRVSAIPPPQIFWKKNNEMLTYNTDRISLYQDNCGRICLLIQNANKEDAGWYTVSAVNEAGVVSCNARLDV 75 (75)
T ss_pred CEEEEEEeecCCCeEEEEECCEECCCCCCcEEEEEcCCCeEEEEECCCCcccCEEEEEEEEcCCCcEEEEEEEeC
Confidence 58999999999999999999999974 4567665443 5999999999999999999999999999988865
No 33
>cd05865 Ig1_NCAM-1 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. Ig1_NCAM-1: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (trans
Probab=99.67 E-value=3.2e-16 Score=117.20 Aligned_cols=76 Identities=24% Similarity=0.456 Sum_probs=64.2
Q ss_pred CCCCceEEEEeeeCCCCC-CeeEEEe-CCEEccC-CCcEEEccC----CcEEEccCCCCCCEEEEEEEEcCC-CCceeeE
Q psy12061 2 AGEGGNVTIFCNPEAAPK-PKFVWKK-DGNIIGS-GGRRKIFEN----GNLLISPVSRDDSGIYSCTATNVH-GMDESKG 73 (626)
Q Consensus 2 ~~~G~~~~l~C~~~g~p~-p~i~W~~-~~~~i~~-~~~~~~~~~----g~L~i~~v~~~d~G~Y~C~a~n~~-g~~~~~~ 73 (626)
+.+|++++|.|.+.|.|. |+|.|++ ||..+.. +.|+.+..+ ++|.|.+++.+|+|.|+|.|.|.. |...+++
T Consensus 12 v~~G~~v~l~C~v~G~P~~p~i~W~~~~g~~l~~~~~r~~v~~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~~g~~~~s~ 91 (96)
T cd05865 12 ISVGESKFFLCQVAGEAKDKDISWFSPNGEKLTPNQQRISVVRNDDYSSTLTIYNANIDDAGIYKCVVSNEDEGESEATV 91 (96)
T ss_pred ECCCCeEEEEEEEeCCCCCCEEEEECCCCcCccccCCeEEEEeCCCCceEEEEeccChhhCEEEEEEEEcCCCCcEEEEE
Confidence 468999999999999995 7999998 8877765 445555433 479999999999999999999997 8888888
Q ss_pred EEEE
Q psy12061 74 RLIV 77 (626)
Q Consensus 74 ~l~v 77 (626)
.|.|
T Consensus 92 ~l~v 95 (96)
T cd05865 92 NVKI 95 (96)
T ss_pred EEEE
Confidence 8877
No 34
>cd05738 Ig2_RPTP_IIa_LAR_like Second immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. Ig2_RPTP_IIa_LAR_like: domain similar to the second immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple Ig-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains.
Probab=99.67 E-value=4.3e-16 Score=111.30 Aligned_cols=70 Identities=34% Similarity=0.601 Sum_probs=62.8
Q ss_pred EEEEeeeCCCCCCeeEEEeCCEEcc--CCCcEEEccCCcEEEccCCCCCCEEEEEEEEcCCCCc-eeeEEEEE
Q psy12061 8 VTIFCNPEAAPKPKFVWKKDGNIIG--SGGRRKIFENGNLLISPVSRDDSGIYSCTATNVHGMD-ESKGRLIV 77 (626)
Q Consensus 8 ~~l~C~~~g~p~p~i~W~~~~~~i~--~~~~~~~~~~g~L~i~~v~~~d~G~Y~C~a~n~~g~~-~~~~~l~v 77 (626)
++|.|.+.|.|.|+|.|+|++.++. .+.++.+..+|+|.|.+++.+|+|.|+|.|.|..|.. ...+.|.|
T Consensus 1 a~l~C~~~G~P~p~v~W~k~~~~~~~~~~~~~~~~~~g~L~i~~~~~~D~G~Y~C~a~N~~G~~~s~~a~l~v 73 (74)
T cd05738 1 ATMLCAASGNPDPEITWFKDFLPVDTTSNGRIKQLRSGALQIENSEESDQGKYECVATNSAGTRYSAPANLYV 73 (74)
T ss_pred CEEEEEEeEecCCEEEEEECCEECccCCCCCEEEcCCcEEEECCCChhhCEEEEEEEECCCCceEcccEEEEE
Confidence 5899999999999999999999987 5678888888899999999999999999999999985 55677776
No 35
>cd05854 Ig6_Contactin-2 Sixth Ig domain of contactin-2. Ig6_Contactin-2: Sixth Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c
Probab=99.66 E-value=6.6e-16 Score=113.21 Aligned_cols=76 Identities=28% Similarity=0.497 Sum_probs=64.4
Q ss_pred ceEEEEeeeCCCCCC--eeEEEeCCEEccCC---CcEEEc----cCCcEEEccCCCCCCEEEEEEEEcCCCCceeeEEEE
Q psy12061 6 GNVTIFCNPEAAPKP--KFVWKKDGNIIGSG---GRRKIF----ENGNLLISPVSRDDSGIYSCTATNVHGMDESKGRLI 76 (626)
Q Consensus 6 ~~~~l~C~~~g~p~p--~i~W~~~~~~i~~~---~~~~~~----~~g~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~ 76 (626)
++++|.|.+.|.|.| .|.|+|||.+|..+ .++... ..++|.|.+++.+|+|.|+|.|.|..|...+.+.|.
T Consensus 1 ~~~~L~C~a~g~P~p~~~v~W~~~g~~i~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~YtC~A~n~~g~~~~~~~L~ 80 (85)
T cd05854 1 ENLTLQCHASHDPTMDLTFTWSLDDFPIDLDKPNGHYRRMEVKETIGDLVIVNAQLSHAGTYTCTAQTVVDSASASATLV 80 (85)
T ss_pred CcEEEEEEEecCCCCCeEEEEEECCeEccccCCCCcEEEEEecceEeEEEEccCChhhCeEEEEEEecCCCCEEEEEEEE
Confidence 579999999999987 68999999998642 343221 346899999999999999999999999999999999
Q ss_pred EEeCC
Q psy12061 77 VLHGP 81 (626)
Q Consensus 77 v~~~p 81 (626)
|..+|
T Consensus 81 V~~~P 85 (85)
T cd05854 81 VRGPP 85 (85)
T ss_pred EECCC
Confidence 97765
No 36
>cd04978 Ig4_L1-NrCAM_like Fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related). Ig4_L1-NrCAM_like: fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related). These proteins belong to the L1 subfamily of cell adhesion molecules (CAMs) and are comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. These molecules are primarily expressed in the nervous system. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.
Probab=99.66 E-value=5.8e-16 Score=112.23 Aligned_cols=73 Identities=30% Similarity=0.594 Sum_probs=65.0
Q ss_pred CceEEEEeeeCCCCCCeeEEEeCCEEccCCCc--EEEccCCcEEEccCCCCCCEEEEEEEEcCCCCceeeEEEEE
Q psy12061 5 GGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGR--RKIFENGNLLISPVSRDDSGIYSCTATNVHGMDESKGRLIV 77 (626)
Q Consensus 5 G~~~~l~C~~~g~p~p~i~W~~~~~~i~~~~~--~~~~~~g~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~v 77 (626)
|++++|.|.+.|.|.|+|.|+++|..+....+ .....++.|.|.+++.+|+|.|+|.|.|..|...+.+.|.|
T Consensus 1 G~~~~l~C~~~g~P~p~i~W~~~g~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~V 75 (76)
T cd04978 1 GETGRLDCEAEGIPQPTITWRLNGVPIEELPPDPRRRVDGGTLILSNVQPNDTAVYQCNASNVHGYLLANAFVHV 75 (76)
T ss_pred CCeEEEEEEceeeCCCEEEEEECCEECCCCCCcceEEccCCEEEECCCChhhCEEEEEEEEccCCeEEEeEEEEE
Confidence 78999999999999999999999999875432 34455678999999999999999999999999999998887
No 37
>cd05728 Ig4_Contactin-2-like Fourth Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins. Ig4_Contactin-2-like: fourth Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.
Probab=99.66 E-value=4.2e-16 Score=114.85 Aligned_cols=75 Identities=35% Similarity=0.651 Sum_probs=68.2
Q ss_pred CCCCceEEEEeeeCCCCCCeeEEEeCCEEccCCCcEEEccCCcEEEccCCCCCCEEEEEEEEcCCCCceeeEEEEE
Q psy12061 2 AGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTATNVHGMDESKGRLIV 77 (626)
Q Consensus 2 ~~~G~~~~l~C~~~g~p~p~i~W~~~~~~i~~~~~~~~~~~g~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~v 77 (626)
+.+|++++|.|.+.|.|.|.+.|+|+|.++..+.++.+ .++.|.|.++..+|+|.|+|.|.|..|...+.+.|.|
T Consensus 11 ~~~G~~~~l~C~~~g~p~p~v~W~k~g~~~~~~~~~~~-~~~~L~i~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~V 85 (85)
T cd05728 11 ADIGSSLRWECKASGNPRPAYRWLKNGQPLASENRIEV-EAGDLRITKLSLSDSGMYQCVAENKHGTIYASAELAV 85 (85)
T ss_pred EcCCCcEEEEEEeeEeCCCEEEEEECCEECCCCCeEEE-eCCEEEEeeCCHHHCEEEEEEEECCCCeEEEEEEEEC
Confidence 56899999999999999999999999999987777665 5778999999999999999999999999888888765
No 38
>cd05863 Ig2_VEGFR-3 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3). Ig2_VEGFR-3: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-3 (Flt-4) binds two members of the VEGF family (VEGF-C and -D) and is involved in tumor angiogenesis and growth.
Probab=99.66 E-value=4.4e-16 Score=106.73 Aligned_cols=65 Identities=28% Similarity=0.397 Sum_probs=56.8
Q ss_pred EEEEeeeCCCCCCeeEEEeCCEEccCCCcEEEccCCcEEEccCCCCCCEEEEEEEEcCCCCceeeEEEEE
Q psy12061 8 VTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTATNVHGMDESKGRLIV 77 (626)
Q Consensus 8 ~~l~C~~~g~p~p~i~W~~~~~~i~~~~~~~~~~~g~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~v 77 (626)
++|.|.+.|.|.|.+.|+|||++|.... ..+.|.|.++..+|+|.|+|.|.|..|.......+.+
T Consensus 1 ~~l~c~v~g~P~P~v~W~kdg~~l~~~~-----~~~~L~i~~v~~~D~G~YtC~a~N~~g~~~~~~~~~l 65 (67)
T cd05863 1 VKLPVKVAAYPPPEFQWYKDGKLISGKH-----SQHSLQIKDVTEASAGTYTLVLWNSAAGLEKRISLEL 65 (67)
T ss_pred CEEEEEEEEeCCCEEEEEECCEECcccC-----CcCEEEECCCCHHHCEEEEEEEEECCccEEEEEEEEE
Confidence 5799999999999999999999996321 3457999999999999999999999998877777665
No 39
>cd05726 Ig4_Robo Fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Ig4_Robo: domain similar to the fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni
Probab=99.66 E-value=7.5e-16 Score=115.19 Aligned_cols=76 Identities=34% Similarity=0.577 Sum_probs=67.9
Q ss_pred CceEEEEeeeCCCCCCeeEEEeCCEEc--------cCCCcEEEccCCcEEEccCCCCCCEEEEEEEEcCCCCceeeEEEE
Q psy12061 5 GGNVTIFCNPEAAPKPKFVWKKDGNII--------GSGGRRKIFENGNLLISPVSRDDSGIYSCTATNVHGMDESKGRLI 76 (626)
Q Consensus 5 G~~~~l~C~~~g~p~p~i~W~~~~~~i--------~~~~~~~~~~~g~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~ 76 (626)
|++++|.|.+.|.|.|.|.|+|+|..+ ....|+.+..+++|.|.+++.+|+|.|+|.|.|..|.....+.|.
T Consensus 1 G~~v~L~C~~~g~P~p~v~W~k~g~~~~~~~~~~~~~~~r~~v~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~ 80 (90)
T cd05726 1 GRTVTFQCEATGNPQPAIFWQKEGSQNLLFSYQPPQSSSRFSVSQTGDLTITNVQRSDVGYYICQTLNVAGSILTKAYLE 80 (90)
T ss_pred CCEEEEEEECCccCCCEEEEEeCCCcceeecccCCCCCCeEEECCCCeEEEeeCChhhCEEEEEEEEcCCCceEEEEEEE
Confidence 789999999999999999999988753 235677887788999999999999999999999999999999999
Q ss_pred EEeC
Q psy12061 77 VLHG 80 (626)
Q Consensus 77 v~~~ 80 (626)
|...
T Consensus 81 V~~~ 84 (90)
T cd05726 81 VTDV 84 (90)
T ss_pred Eeec
Confidence 9763
No 40
>cd05876 Ig3_L1-CAM Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). Ig3_L1-CAM: third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.
Probab=99.65 E-value=4.7e-16 Score=110.07 Aligned_cols=70 Identities=26% Similarity=0.476 Sum_probs=61.1
Q ss_pred EEEEeeeCCCCCCeeEEEeCCEEccCCCcEEEccCCcEEEccCCCCCCEEEEEEEEcCCCCceeeEEEEE
Q psy12061 8 VTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTATNVHGMDESKGRLIV 77 (626)
Q Consensus 8 ~~l~C~~~g~p~p~i~W~~~~~~i~~~~~~~~~~~g~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~v 77 (626)
+.|.|.+.|.|.|.|.|+|++..+..+.......+++|.|.+++.+|+|.|+|.|.|..|.....+.|.|
T Consensus 1 ~~L~C~~~G~P~P~v~W~k~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V 70 (71)
T cd05876 1 LVLECIAEGLPTPEVHWDRIDGPLSPNRTKKLNNNKTLQLDNVLESDDGEYVCTAENSEGSARHHYTVTV 70 (71)
T ss_pred CEEEEEeeEecCCeEEEEECCcCCCCCceeEEcCCCEEEEcccCHHhCEEEEEEEEcCCCeEEEEEEEEE
Confidence 4799999999999999999998886554444455678999999999999999999999999888888876
No 41
>cd04968 Ig3_Contactin_like Third Ig domain of contactin. Ig3_Contactin_like: Third Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week
Probab=99.64 E-value=1.1e-15 Score=114.00 Aligned_cols=75 Identities=32% Similarity=0.572 Sum_probs=66.6
Q ss_pred CCCCceEEEEeeeCCCCCCeeEEEeCCEEccCCCcEEEccCCcEEEccCCCCCCEEEEEEEEcCCCCceeeEEEEE
Q psy12061 2 AGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTATNVHGMDESKGRLIV 77 (626)
Q Consensus 2 ~~~G~~~~l~C~~~g~p~p~i~W~~~~~~i~~~~~~~~~~~g~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~v 77 (626)
+.+|++++|.|.+.|.|.|.+.|+|++..+....+.. ..++.|.|.+++.+|+|.|+|.|.|..|.....+.|.|
T Consensus 13 ~~~g~~v~l~C~~~g~P~p~v~W~k~~~~~~~~~~~~-~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V 87 (88)
T cd04968 13 ALKGQNVTLECFALGNPVPQIKWRKVDGSMPSSAEIS-MSGAVLKIPNIQFEDEGTYECEAENIKGKDTHQGRIYV 87 (88)
T ss_pred EeCCCcEEEEEEeeEeCCCEEEEEECCCcCCCccEEE-EeCCEEEECCCCcccCEEEEEEEEECCCcEEEEEEEEE
Confidence 5689999999999999999999999988776554443 45788999999999999999999999999999998877
No 42
>cd05859 Ig4_PDGFR-alpha Fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha. IG4_PDGFR-alpha: The fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha. PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFR alpha binds to all three PDGFs, whereas the PDGFR beta (not included in this group) binds only to PDGF-B. PDGF alpha is organized as an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFR alpha and PDGFR beta are essential for normal development.
Probab=99.64 E-value=8.7e-16 Score=116.11 Aligned_cols=77 Identities=21% Similarity=0.242 Sum_probs=66.6
Q ss_pred CCCCceEEEEeeeCCCCCCeeEEEeCCEEccCCCcEEEcc---------CCcEEEccCCCCCCEEEEEEEEcCCCCceee
Q psy12061 2 AGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFE---------NGNLLISPVSRDDSGIYSCTATNVHGMDESK 72 (626)
Q Consensus 2 ~~~G~~~~l~C~~~g~p~p~i~W~~~~~~i~~~~~~~~~~---------~g~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~ 72 (626)
+..|+.++|.|.+.|.|+|++.|+|||.+|..+.+..+.. ..+|.|.++..+|+|.|+|.|.|..|....+
T Consensus 15 ~~~~~~~~l~~~v~g~P~P~v~W~kdg~~l~~~~~~~~~~~~~~~~~~~~s~L~I~~v~~~D~G~Ytc~A~N~~g~~~~t 94 (101)
T cd05859 15 ANLHEVKEFVVEVEAYPPPQIRWLKDNRTLIENLTEITTSEHNVQETRYVSKLKLIRAKEEDSGLYTALAQNEDAVKSYT 94 (101)
T ss_pred EecCCcEEEEEEEEEeCCCceEEEECCEECcCCcceEEeccccccceeeccEEEEeeCCHHHCEEEEEEEEcCCceEEEE
Confidence 4578999999999999999999999999998665543321 2469999999999999999999999999999
Q ss_pred EEEEEE
Q psy12061 73 GRLIVL 78 (626)
Q Consensus 73 ~~l~v~ 78 (626)
+.|.|.
T Consensus 95 ~~l~V~ 100 (101)
T cd05859 95 FALQIQ 100 (101)
T ss_pred EEEEEE
Confidence 988874
No 43
>cd05725 Ig3_Robo Third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Ig3_Robo: domain similar to the third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni
Probab=99.64 E-value=1.1e-15 Score=107.84 Aligned_cols=69 Identities=32% Similarity=0.624 Sum_probs=61.7
Q ss_pred EEEEeeeCCCCCCeeEEEeCCEEccCCCcEEEccCCcEEEccCCCCCCEEEEEEEEcCCCCceeeEEEEE
Q psy12061 8 VTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTATNVHGMDESKGRLIV 77 (626)
Q Consensus 8 ~~l~C~~~g~p~p~i~W~~~~~~i~~~~~~~~~~~g~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~v 77 (626)
++|.|.+.|.|.|.+.|+|++..+. ..++.+..+++|.|.+++.+|+|.|+|.|.|..|.....+.|.|
T Consensus 1 v~l~C~~~g~P~p~v~W~k~~~~~~-~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V 69 (69)
T cd05725 1 VEFQCEVGGDPVPTVLWRKEDGELP-KGRAEILDDKSLKIRNVTAGDEGSYTCEAENMVGKIEASASLTV 69 (69)
T ss_pred CEEEEECccCCCCEEEEEECCccCC-CCcEEEeeCCEEEECcCChhHCEEEEEEEEcCCCcEEEEEEEEC
Confidence 5899999999999999999988774 45677777889999999999999999999999999988888765
No 44
>cd05730 Ig3_NCAM-1_like Third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). Ig3_NCAM-1_like: domain similar to the third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1,and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the
Probab=99.63 E-value=2e-15 Score=114.54 Aligned_cols=77 Identities=35% Similarity=0.620 Sum_probs=68.2
Q ss_pred CCCCceEEEEeeeCCCCCCeeEEEeCCEEccCC-CcEEEccCC-cEEEccCCCCCCEEEEEEEEcCCCCceeeEEEEEE
Q psy12061 2 AGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSG-GRRKIFENG-NLLISPVSRDDSGIYSCTATNVHGMDESKGRLIVL 78 (626)
Q Consensus 2 ~~~G~~~~l~C~~~g~p~p~i~W~~~~~~i~~~-~~~~~~~~g-~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~v~ 78 (626)
+.+|+++.|.|.+.|.|.|.|.|+|+|..+... .++....++ .|.|.+++.+|+|.|+|.|.|..|.....+.|.|.
T Consensus 15 ~~~G~~v~L~C~~~g~P~p~v~W~k~g~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~L~V~ 93 (95)
T cd05730 15 ANLGQSVTLACDADGFPEPTMTWTKDGEPIESGEEKYSFNEDGSEMTILDVDKLDEAEYTCIAENKAGEQEAEIHLKVF 93 (95)
T ss_pred EeCCCCEEEEEeccEeCCCEEEEEECCEECcCCCCEEEEeCCCCEEEECCCChhhCEEEEEEEEcCCCeEEEEEEEEEE
Confidence 468999999999999999999999999999765 555554454 59999999999999999999999999999999885
No 45
>cd05764 Ig_2 Subgroup of the immunoglobulin (Ig) superfamily. Ig_2: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=99.63 E-value=1.7e-15 Score=108.77 Aligned_cols=73 Identities=29% Similarity=0.621 Sum_probs=65.7
Q ss_pred CceEEEEeeeCCCCCCeeEEEe-CCEEccCCCcEEEccCCcEEEccCCCCCCEEEEEEEEcCCCCceeeEEEEE
Q psy12061 5 GGNVTIFCNPEAAPKPKFVWKK-DGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTATNVHGMDESKGRLIV 77 (626)
Q Consensus 5 G~~~~l~C~~~g~p~p~i~W~~-~~~~i~~~~~~~~~~~g~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~v 77 (626)
|+++.|.|.+.|.|.|++.|++ ++..+....+..+..+++|.|.++..+|+|.|+|.|.|..|.....+.|.|
T Consensus 1 G~~~~l~C~~~g~P~p~v~W~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~v 74 (74)
T cd05764 1 GQRATLRCKARGDPEPAIHWISPDGKLISNSSRTLVYDNGTLDILITTVKDTGSFTCIASNAAGEATATVELHI 74 (74)
T ss_pred CCeEEEEEEccCcCCCEEEEEeCCCEEecCCCeEEEecCCEEEEEECChhhCEEEEEEEECCCCeEEEEEEEEC
Confidence 7899999999999999999997 788877777777888899999999999999999999999999887777754
No 46
>cd05739 Ig3_RPTP_IIa_LAR_like Third immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. Ig3_RPTP_IIa_LAR_like: domain similar to the third immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple IG-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains. Included in this group is Drosophila LAR (DLAR).
Probab=99.63 E-value=1.7e-15 Score=105.76 Aligned_cols=68 Identities=26% Similarity=0.515 Sum_probs=58.4
Q ss_pred CceEEEEeeeCCCCCCeeEEEeCCEEccCCCcEEEccCCcEEEccCCCCCCEEEEEEEEcCCCCceeeEEE
Q psy12061 5 GGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTATNVHGMDESKGRL 75 (626)
Q Consensus 5 G~~~~l~C~~~g~p~p~i~W~~~~~~i~~~~~~~~~~~g~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l 75 (626)
|++++|.|.+.|.|.|.|.|+|+|.++....++.+ .++.|.|.+++ |+|.|+|.|.|..|.....+.|
T Consensus 1 G~~v~L~C~a~G~P~P~v~W~k~g~~l~~~~~~~~-~~~~L~i~~~~--d~G~Y~C~A~N~~G~~~~~a~l 68 (69)
T cd05739 1 GGSVNLTCVAVGAPMPYVKWMKGGEELTKEDEMPV-GRNVLELTNIY--ESANYTCVAISSLGMIEATAQV 68 (69)
T ss_pred CCeEEEEEEeeecCCCEEEEEECCEECCCccceec-CccEEEEeccc--cCeeEEEEEEeCCCEEEEEEEE
Confidence 78999999999999999999999999876655443 34479999874 8999999999999998887766
No 47
>cd05857 Ig2_FGFR Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. Ig2_FGFR: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three IG-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin sulfate proteoglycans.
Probab=99.63 E-value=2.2e-15 Score=111.85 Aligned_cols=76 Identities=25% Similarity=0.423 Sum_probs=65.5
Q ss_pred CCCCceEEEEeeeCCCCCCeeEEEeCCEEccCCCcE---EE-ccCCcEEEccCCCCCCEEEEEEEEcCCCCceeeEEEEE
Q psy12061 2 AGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRR---KI-FENGNLLISPVSRDDSGIYSCTATNVHGMDESKGRLIV 77 (626)
Q Consensus 2 ~~~G~~~~l~C~~~g~p~p~i~W~~~~~~i~~~~~~---~~-~~~g~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~v 77 (626)
|.+|+.++|.|.+.|.|.|.|.|+|+|.++..+.+. .. ..+++|.|.++..+|+|.|+|.|.|..|.....+.|.|
T Consensus 6 v~~G~~~~L~C~~~g~P~p~i~W~k~g~~l~~~~~~~~~~~~~~~~~l~i~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~v 85 (85)
T cd05857 6 VPAANTVKFRCPAAGNPTPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINHTYHLDV 85 (85)
T ss_pred cCCCCEEEEEEEcCCCCCCEEEEEECCEECCCCCceeeeEEeCCceEEEEccCCcccCEEEEEEEEeCCCEEEEEEEEEC
Confidence 578999999999999999999999999999765443 22 23447999999999999999999999999888888765
No 48
>cd04976 Ig2_VEGFR Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR). Ig2_VEGFR: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A. VEGFR-1 may play an inhibitory part in these processes by binding VEGF and interfering with its interaction with VEGFR-2. VEGFR-1 has a signa
Probab=99.63 E-value=1.6e-15 Score=106.98 Aligned_cols=69 Identities=26% Similarity=0.420 Sum_probs=60.5
Q ss_pred EEEEeeeCCCCCCeeEEEeCCEEccCCCcEEEccCCcEEEccCCCCCCEEEEEEEEcCCCCceeeEEEEE
Q psy12061 8 VTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTATNVHGMDESKGRLIV 77 (626)
Q Consensus 8 ~~l~C~~~g~p~p~i~W~~~~~~i~~~~~~~~~~~g~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~v 77 (626)
++|.|.+.|.|.|.+.|+|||.+|..+.+ ....+++|.|.++..+|+|.|+|.|.|..|.......+.|
T Consensus 1 ~~l~c~v~g~P~p~v~W~k~g~~l~~~~~-~~~~~~~L~I~~v~~~D~G~YtC~a~N~~g~~~~~~~~~~ 69 (71)
T cd04976 1 VRLPVKVKAYPPPEIQWYKNGKLISEKNR-TKKSGHSLTIKDVTEEDAGNYTVVLTNKQAKLEKRLTFTL 69 (71)
T ss_pred CEEEeEEEEeCCCEEEEEECCEECCCCCE-EEcCCCEEEECcCCHHHCEEEEEEEEcCCccEEEEEEEEE
Confidence 57999999999999999999999987644 4455678999999999999999999999998887777665
No 49
>cd05864 Ig2_VEGFR-2 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2). Ig2_VEGF-2: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-2 (KDR/Flk-1) is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF-A also interacts with VEGFR-1, which it binds more strongly than VEGFR-2. VEGFR-2 and -1 may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.
Probab=99.63 E-value=1.2e-15 Score=106.22 Aligned_cols=68 Identities=25% Similarity=0.343 Sum_probs=58.5
Q ss_pred EEEEeeeCCCCCCeeEEEeCCEEccCCCcEEEccCCcEEEccCCCCCCEEEEEEEEcCCCCceeeEEEEE
Q psy12061 8 VTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTATNVHGMDESKGRLIV 77 (626)
Q Consensus 8 ~~l~C~~~g~p~p~i~W~~~~~~i~~~~~~~~~~~g~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~v 77 (626)
++|.|.+.|.|.|.+.|+|||.+|..+.+ +..+++|.|.++..+|+|.|+|.|.|..|.......+.+
T Consensus 1 ~~~~c~v~G~P~P~v~W~k~g~~l~~~~~--~~~~~~L~I~~v~~~D~G~YtC~a~N~~G~~~~~~t~~l 68 (70)
T cd05864 1 VKIPVKYYGYPPPEVKWYKNGQLIVLNHT--FKRGVHLTIYEVTEKDAGNYTVVLTNPITKEEQRHTFQL 68 (70)
T ss_pred CEEEeEEEEeCCCEEEEEECCEECCCCCE--EccCCEEEECcCCHHHCEEEEEEEEECCCceeeEEEEEE
Confidence 47999999999999999999999976543 344568999999999999999999999998777766655
No 50
>cd05743 Ig_Perlecan_D2_like Immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2. Ig_Perlecan_D2_like: the immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2. Perlecan consists of five domains. Domain I has three putative heparan sulfate attachment sites; domain II has four LDL receptor-like repeats, and one Ig-like repeat; domain III resembles the short arm of laminin chains; domain IV has multiple Ig-like repeats (21 repeats in human perlecan); and domain V resembles the globular G domain of the laminin A chain and internal repeats of EGF. Perlecan may participate in a variety of biological functions including cell binding, LDL-metabolism, basement membrane assembly and selective permeability, calcium binding, and growth- and neurite-promoting activities.
Probab=99.63 E-value=1.4e-15 Score=110.00 Aligned_cols=73 Identities=29% Similarity=0.490 Sum_probs=64.4
Q ss_pred CceEEEEeeeCCCCCCeeEEEeCCEEccCCCcEEEccC---CcEEEccCCCCCCEEEEEEEEcCCCCceeeEEEEE
Q psy12061 5 GGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFEN---GNLLISPVSRDDSGIYSCTATNVHGMDESKGRLIV 77 (626)
Q Consensus 5 G~~~~l~C~~~g~p~p~i~W~~~~~~i~~~~~~~~~~~---g~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~v 77 (626)
|++++|.|.+.|.|.|.|.|+|++..+....|+.+... +.|.|.+++.+|+|.|+|.|.|..|...+.+.+++
T Consensus 1 G~~v~l~C~~~g~P~p~v~W~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~~~~ 76 (78)
T cd05743 1 GETVEFTCVATGVPTPIINWRLNWGHVPDSARVSITSEGGYGTLTIRDVKESDQGAYTCEAINTRGMVFGIPDGIL 76 (78)
T ss_pred CCEEEEEEEEEEecCCEEEEEECCeECCCCCCEEEEECCCEEEEEECCCChHHCEEEEEEEEecCCEEEecccEEE
Confidence 78999999999999999999999999877777766543 47999999999999999999999999888776655
No 51
>cd05748 Ig_Titin_like Immunoglobulin (Ig)-like domain of titin and similar proteins. Ig_Titin_like: immunoglobulin (Ig)-like domain found in titin-like proteins. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic, depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone. It appears to function similarly to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching. Within the sarcomere, titin is also attached to or is associated with myosin binding protein C (MyBP-C). MyBP-C appears to contribute to the generation of passive tension by titin, and similar to titin has repeated Ig-like and FN-
Probab=99.63 E-value=2.5e-15 Score=107.87 Aligned_cols=71 Identities=30% Similarity=0.447 Sum_probs=62.9
Q ss_pred eEEEEeeeCCCCCCeeEEEeCCEEccCCCcEEEccC---CcEEEccCCCCCCEEEEEEEEcCCCCceeeEEEEE
Q psy12061 7 NVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFEN---GNLLISPVSRDDSGIYSCTATNVHGMDESKGRLIV 77 (626)
Q Consensus 7 ~~~l~C~~~g~p~p~i~W~~~~~~i~~~~~~~~~~~---g~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~v 77 (626)
.++|.|.+.|.|.|++.|+|+|..+..+.++.+... +.|.|.++..+|+|.|+|.|.|..|.....+.|.|
T Consensus 1 ~~~l~c~~~G~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~V 74 (74)
T cd05748 1 SVRLEVPISGRPTPTVTWSKDGKPLKLSGRVQIETTASSTSLVIKNAERSDSGKYTLTLKNPAGEKSATINVKV 74 (74)
T ss_pred CEEEEeeEeeeCCCeEEEEECCEEcCCCCeEEEEECCCeEEEEECCCCcCcCEEEEEEEECCCccEEEEEEEEC
Confidence 478999999999999999999999977777776543 36999999999999999999999999888888765
No 52
>cd04970 Ig6_Contactin_like Sixth Ig domain of contactin. Ig6_Contactin_like: Sixth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week
Probab=99.63 E-value=1.7e-15 Score=111.92 Aligned_cols=76 Identities=28% Similarity=0.464 Sum_probs=64.0
Q ss_pred ceEEEEeeeCCCCCC--eeEEEeCCEEccCCC---cEE----EccCCcEEEccCCCCCCEEEEEEEEcCCCCceeeEEEE
Q psy12061 6 GNVTIFCNPEAAPKP--KFVWKKDGNIIGSGG---RRK----IFENGNLLISPVSRDDSGIYSCTATNVHGMDESKGRLI 76 (626)
Q Consensus 6 ~~~~l~C~~~g~p~p--~i~W~~~~~~i~~~~---~~~----~~~~g~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~ 76 (626)
++++|.|.+.|.|.| ++.|+|||.+|..+. ++. ...+++|.|.+++.+|+|.|+|.|.|..|...+.+.|.
T Consensus 1 e~~~L~C~~~g~P~p~i~~~W~~~g~~i~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~~~~~l~ 80 (85)
T cd04970 1 ESITLQCHASHDPTLDLTFTWSFNGVPIDFDKDGGHYRRVGGKDSNGDLMIRNAQLKHAGKYTCTAQTVVDSLSASADLI 80 (85)
T ss_pred CcEEEEEEEecCCCCCeEEEEEECCeEeeccCCCccEEEEecccccceEEEccCCHHhCeeeEEEEecCCCcEEEEEEEE
Confidence 579999999999988 679999999986332 221 22467899999999999999999999999999999999
Q ss_pred EEeCC
Q psy12061 77 VLHGP 81 (626)
Q Consensus 77 v~~~p 81 (626)
|..+|
T Consensus 81 V~~pP 85 (85)
T cd04970 81 VRGPP 85 (85)
T ss_pred EECCC
Confidence 97765
No 53
>cd05851 Ig3_Contactin-1 Third Ig domain of contactin-1. Ig3_Contactin-1: Third Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.
Probab=99.62 E-value=4.5e-15 Score=109.89 Aligned_cols=87 Identities=22% Similarity=0.287 Sum_probs=73.4
Q ss_pred CceeeeCCCceEEecCCcEEEEEEecccCCcceeEEEeeCCEEeccccCCccCCCeeEecCCeEEEeecCCCCCEeEEEE
Q psy12061 81 PSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEITNASFADAGEYECV 160 (626)
Q Consensus 81 p~~~~~~~~~~~v~~g~~~~l~C~~~~~p~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~ 160 (626)
|.+.. .+.+..+.+|++++|.|.+.|.|.|. +.|+|++..+... .++...++.|.|.+++.+|+|.|+|.
T Consensus 2 p~i~~-~~~~~~~~~G~~v~l~C~~~G~P~P~--v~W~k~~~~~~~~-------~~~~~~~~~L~I~~v~~~D~G~Y~C~ 71 (88)
T cd05851 2 ADINV-KFKDTYALKGQNVTLECFALGNPVPV--IRWRKILEPMPAT-------AEISMSGAVLKIFNIQPEDEGTYECE 71 (88)
T ss_pred CceEE-ccccEEEeCCCcEEEEEEecccCCCE--EEEEECCcCCCCC-------CEEecCCCEEEECcCChhhCEEEEEE
Confidence 44443 57788999999999999999999885 5899999877542 34555677999999999999999999
Q ss_pred EEeCCCceEEEEEEEEe
Q psy12061 161 VKSTVGKISTKTTVIVE 177 (626)
Q Consensus 161 a~n~~g~~~~~~~l~v~ 177 (626)
|.|..|..+..+.|.|+
T Consensus 72 A~N~~G~~~~~~~l~V~ 88 (88)
T cd05851 72 AENIKGKDKHQARVYVQ 88 (88)
T ss_pred EEcCCCceEEEEEEEEC
Confidence 99999999999998874
No 54
>cd04973 Ig1_FGFR First immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Ig1_FGFR: The first immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for all FGFs.
Probab=99.61 E-value=3.2e-15 Score=108.29 Aligned_cols=74 Identities=26% Similarity=0.460 Sum_probs=64.6
Q ss_pred CCCCceEEEEeeeCCCCCCeeEEEeCCEEccCCCcEEEccCCcEEEccCCCCCCEEEEEEEEcCCCCceeeEEEEE
Q psy12061 2 AGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTATNVHGMDESKGRLIV 77 (626)
Q Consensus 2 ~~~G~~~~l~C~~~g~p~p~i~W~~~~~~i~~~~~~~~~~~g~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~v 77 (626)
+.+|+.++|.|.+.|. .|.|.|+|||.+|..+.++.+. +++|.|.+++.+|+|.|+|.|.|..|.....+.|.|
T Consensus 6 ~~~G~~v~l~C~~~~~-~~~v~W~k~g~~l~~~~~~~~~-~~~L~I~~~~~~DsG~Y~C~a~n~~g~~~~~~~v~V 79 (79)
T cd04973 6 AHPGDLLQLRCRLRDD-VQSINWTKDGVQLGENNRTRIT-GEEVQIKDAVPRDSGLYACVTSSPSGSDTTYFSVNV 79 (79)
T ss_pred ecCCCCEEEEEEecCC-CceEEEeeCCcCCCCCceEEEe-CCEEEECCCChhhCEEEEEEEeCCCCcccEEEEEeC
Confidence 5789999999999996 5699999999999877777664 568999999999999999999999998777776654
No 55
>cd05747 Ig5_Titin_like M5, fifth immunoglobulin (Ig)-like domain of human titin C terminus and similar proteins. Ig5_Titin_like: domain similar to the M5, fifth immunoglobulin (Ig)-like domain from the human titin C terminus. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic; depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone, and appears to function similar to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching.
Probab=99.61 E-value=4.2e-15 Score=111.67 Aligned_cols=74 Identities=30% Similarity=0.543 Sum_probs=66.3
Q ss_pred CCCCceEEEEeeeCCCCCCeeEEEeCCEEccCCCcEEEccC---CcEEEccCCCCCCEEEEEEEEcCCCCceeeEEE
Q psy12061 2 AGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFEN---GNLLISPVSRDDSGIYSCTATNVHGMDESKGRL 75 (626)
Q Consensus 2 ~~~G~~~~l~C~~~g~p~p~i~W~~~~~~i~~~~~~~~~~~---g~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l 75 (626)
+.+|+++.|.|.+.|.|.|.+.|+|+|..+..+.|+.+... ++|.|.+++.+|+|.|+|.|.|..|.....+.|
T Consensus 15 ~~~G~~~~L~C~~~g~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~N~~G~~~~~~~l 91 (92)
T cd05747 15 VSEGESARFSCDVDGEPAPTVTWMREGQIIVSSQRHQITSTEYKSTFEISKVQMSDEGNYTVVVENSEGKQEAQFTL 91 (92)
T ss_pred EeCCCcEEEEEEEeecCCCEEEEEECCEECCCCCcEEEEEcCCeeEEEECCCCcccCEeEEEEEEcCCCCEeEEEEe
Confidence 67899999999999999999999999999987777777643 479999999999999999999999988777665
No 56
>cd04972 Ig_TrkABC_d4 Fourth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC. TrkABC_d4: the fourth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor fo
Probab=99.61 E-value=2.9e-15 Score=112.03 Aligned_cols=76 Identities=29% Similarity=0.448 Sum_probs=64.6
Q ss_pred CCCCceEEEEeeeCCCCCCeeEEEeCCEEccCCCcEEE---ccCCcEEEccCCCCCCEEEEEEEEcCCCCceeeEEEEE
Q psy12061 2 AGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKI---FENGNLLISPVSRDDSGIYSCTATNVHGMDESKGRLIV 77 (626)
Q Consensus 2 ~~~G~~~~l~C~~~g~p~p~i~W~~~~~~i~~~~~~~~---~~~g~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~v 77 (626)
+.+|++++|.|.+.|.|.|.|.|+|||..+....+... ...++|.|.++..+|.|.|+|.|.|..|.....+.|.|
T Consensus 12 v~~G~~v~l~C~~~G~P~p~v~W~~~g~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~g~Y~C~A~N~~G~~~~~~~L~v 90 (90)
T cd04972 12 VYEGGTATIRCTAEGSPLPKVEWIIAGLIVIQTRTDTLETTVDIYNLQLSNITSETQTTVTCTAENPVGQANVSVQVTV 90 (90)
T ss_pred EcCCCcEEEEEEEEEcCCCeEEEEECCEEccCCccEEEEecCCEEEEEEecCCcccCEEEEEEEECCCCceeEEEEEeC
Confidence 46899999999999999999999999998865543222 22347999999999999999999999999888888764
No 57
>cd05724 Ig2_Robo Second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Ig2_Robo: domain similar to the second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antago
Probab=99.61 E-value=4.6e-15 Score=110.57 Aligned_cols=76 Identities=38% Similarity=0.732 Sum_probs=66.0
Q ss_pred CCCCceEEEEeee-CCCCCCeeEEEeCCEEccC-CCcEEEccCCcEEEccCCCCCCEEEEEEEEcCCCCcee-eEEEEE
Q psy12061 2 AGEGGNVTIFCNP-EAAPKPKFVWKKDGNIIGS-GGRRKIFENGNLLISPVSRDDSGIYSCTATNVHGMDES-KGRLIV 77 (626)
Q Consensus 2 ~~~G~~~~l~C~~-~g~p~p~i~W~~~~~~i~~-~~~~~~~~~g~L~i~~v~~~d~G~Y~C~a~n~~g~~~~-~~~l~v 77 (626)
+.+|+++.|.|.+ .|.|.|.|.|+|+|..+.. ..++.+..+++|.|.+++.+|+|.|+|.|.|..|...+ .+.|.|
T Consensus 8 ~~~G~~v~l~C~~~~g~p~p~i~W~k~g~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~s~~~~l~V 86 (86)
T cd05724 8 VAVGEMAVLECSPPRGHPEPTVSWRKDGQPLNLDNERVRIVDDGNLLIAEARKSDEGTYKCVATNMVGERESAAARLSV 86 (86)
T ss_pred EeCCCCEEEEEECCCCCCCCEEEEEECCEECCCCCCCEEEccCCEEEEeECCcccCEEEEEEEEeccCceeeeeEEEEC
Confidence 5689999999998 7999999999999999876 56777777889999999999999999999999998654 455543
No 58
>cd05866 Ig1_NCAM-2 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2. Ig1_NCAM-2: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2 (OCAM/mamFas II, RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.
Probab=99.61 E-value=3.9e-15 Score=110.04 Aligned_cols=75 Identities=27% Similarity=0.464 Sum_probs=64.5
Q ss_pred CCCCceEEEEeeeCCCCCCeeEEEe-CCEEccCCCcEEEccCC---cEEEccCCCCCCEEEEEEEEcCCCCce-eeEEEE
Q psy12061 2 AGEGGNVTIFCNPEAAPKPKFVWKK-DGNIIGSGGRRKIFENG---NLLISPVSRDDSGIYSCTATNVHGMDE-SKGRLI 76 (626)
Q Consensus 2 ~~~G~~~~l~C~~~g~p~p~i~W~~-~~~~i~~~~~~~~~~~g---~L~i~~v~~~d~G~Y~C~a~n~~g~~~-~~~~l~ 76 (626)
+.+|++++|.|.+.|.|. .+.|+| ++.++..+.|+.+..+| +|.|.++..+|+|.|+|.|.|..|... +...|.
T Consensus 12 v~~G~~v~l~C~~~G~P~-~v~W~k~~g~~~~~~~r~~~~~~g~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~i~l~ 90 (92)
T cd05866 12 LSVGESKFFTCTAIGEPE-SIDWYNPQGEKIVSSQRVVVQKEGVRSRLTIYNANIEDAGIYRCQATDAKGQTQEATVVLE 90 (92)
T ss_pred EcCCCeEEEEEEEEEeCC-eEEEEeCCCeEecCCCCEEEEeCCCeeEEEEecCChHHCEEEEEEEEcCCCcEEEEEEEEE
Confidence 578999999999999998 999998 68888777888887666 799999999999999999999999854 445554
Q ss_pred E
Q psy12061 77 V 77 (626)
Q Consensus 77 v 77 (626)
|
T Consensus 91 ~ 91 (92)
T cd05866 91 I 91 (92)
T ss_pred E
Confidence 4
No 59
>cd05740 Ig_CEACAM_D4 Fourth immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM). Ig_CEACAM_D4: immunoglobulin (Ig)-like domain 4 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the
Probab=99.61 E-value=7.2e-15 Score=109.07 Aligned_cols=74 Identities=27% Similarity=0.427 Sum_probs=62.7
Q ss_pred CCCCceEEEEeeeCCCCCCeeEEEeCCEEccCCCcEEEcc-CCcEEEccCCCCCCEEEEEEEEcCCCCcee-eEEEEE
Q psy12061 2 AGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFE-NGNLLISPVSRDDSGIYSCTATNVHGMDES-KGRLIV 77 (626)
Q Consensus 2 ~~~G~~~~l~C~~~g~p~p~i~W~~~~~~i~~~~~~~~~~-~g~L~i~~v~~~d~G~Y~C~a~n~~g~~~~-~~~l~v 77 (626)
+.+|++++|.|.+.|. .|.|.|+||+.++.. +++.+.. +++|.|.+++.+|+|.|+|.|.|..|...+ .+.|.|
T Consensus 15 v~~g~~v~l~C~a~g~-~p~i~W~kng~~l~~-~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~S~~~~L~V 90 (91)
T cd05740 15 PEDNQPVTLTCEAEGQ-ATYIWWVNNGSLLVP-PRLQLSNDNRTLTFNNVTRSDTGHYQCEASNEVSNMTSDPYILNV 90 (91)
T ss_pred cccCCcEEEEEEeCCC-CCEEEEEECCEECCC-CCEEEeCCCCEEEECcCChhhCEEEEEEEEcCCCCEEeeeEEEEe
Confidence 5689999999999999 999999999999865 4555543 358999999999999999999999998665 455655
No 60
>cd05855 Ig_TrkB_d5 Fifth domain (immunoglobulin-like) of Trk receptor TrkB. TrkB_d5: the fifth domain of Trk receptor TrkB, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors, which mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. The Trks are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkB shares significant sequence homology and domain organization with TrkA, and TrkC. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. In some cell systems NT-3 can activate TrkA and TrkB receptors. TrKB transcripts are found throughout multiple structures of the central and peripheral nervous systems.
Probab=99.60 E-value=4.1e-15 Score=105.39 Aligned_cols=67 Identities=25% Similarity=0.371 Sum_probs=56.2
Q ss_pred EEeeeCCCCCCeeEEEeCCEEccCCCcEEE----c----cCCcEEEccCCCCCCEEEEEEEEcCCCCceeeEEEE
Q psy12061 10 IFCNPEAAPKPKFVWKKDGNIIGSGGRRKI----F----ENGNLLISPVSRDDSGIYSCTATNVHGMDESKGRLI 76 (626)
Q Consensus 10 l~C~~~g~p~p~i~W~~~~~~i~~~~~~~~----~----~~g~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~ 76 (626)
|.|.+.|+|.|+|+|+|||.+|..+.+... . ..+.|.|.++..+|+|.|+|+|.|..|.+.+.+.+.
T Consensus 3 i~~~v~G~P~Pti~W~kng~~l~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~YtC~A~N~~G~~~~~~~~~ 77 (79)
T cd05855 3 IPFTVKGNPKPTLQWFHEGAILNESEYICTKIHVINNTEYHGCLQLDNPTHLNNGIYTLVAKNEYGEDEKNVSAH 77 (79)
T ss_pred EEEEEeEeCCCceEEEECCEECCCCcceeeeeEeecccceEEEEEECCCCcccCEEEEEEEEcCCcccceEEEee
Confidence 789999999999999999999986654321 1 134799999999999999999999999887776654
No 61
>cd05854 Ig6_Contactin-2 Sixth Ig domain of contactin-2. Ig6_Contactin-2: Sixth Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c
Probab=99.60 E-value=7.4e-15 Score=107.65 Aligned_cols=83 Identities=30% Similarity=0.554 Sum_probs=67.5
Q ss_pred CcEEEEEEecccCCcceeEEEeeCCEEeccccCCccCCCeeE--ecCCeEEEeecCCCCCEeEEEEEEeCCCceEEEEEE
Q psy12061 97 RNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNIN--IDGGLLEITNASFADAGEYECVVKSTVGKISTKTTV 174 (626)
Q Consensus 97 ~~~~l~C~~~~~p~p~~~i~W~~~~~~~~~~~~~~~~~~~~~--~~~~~l~i~~~~~~d~g~Y~C~a~n~~g~~~~~~~l 174 (626)
++++|.|.+.+.|.|.++|.|+|||..+........ ..++. ...+.|.|.+++..|+|.|+|.|.|..|..++++.|
T Consensus 1 ~~~~L~C~a~g~P~p~~~v~W~~~g~~i~~~~~~~~-~~~~~~~~~~~~L~I~~v~~~D~G~YtC~A~n~~g~~~~~~~L 79 (85)
T cd05854 1 ENLTLQCHASHDPTMDLTFTWSLDDFPIDLDKPNGH-YRRMEVKETIGDLVIVNAQLSHAGTYTCTAQTVVDSASASATL 79 (85)
T ss_pred CcEEEEEEEecCCCCCeEEEEEECCeEccccCCCCc-EEEEEecceEeEEEEccCChhhCeEEEEEEecCCCCEEEEEEE
Confidence 478999999999999888999999998864321000 01111 145799999999999999999999999999999999
Q ss_pred EEeCCC
Q psy12061 175 IVEGPP 180 (626)
Q Consensus 175 ~v~~~P 180 (626)
.|.++|
T Consensus 80 ~V~~~P 85 (85)
T cd05854 80 VVRGPP 85 (85)
T ss_pred EEECCC
Confidence 999876
No 62
>cd05853 Ig6_Contactin-4 Sixth Ig domain of contactin-4. Ig6_Contactin-4: sixth Ig domain of the neural cell adhesion molecule contactin-4. Contactins are neural cell adhesion molecules, and are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. Highest expresson of contactin-4 is in testes, thyroid, small intestine, uterus and brain. Contactin-4 plays a role in the response of neuroblastoma cells to differentiating agents, such as retinoids. The contactin 4 gene is associated with cerebellar degeneration in spinocerebellar ataxia type 16.
Probab=99.60 E-value=8.4e-15 Score=105.48 Aligned_cols=80 Identities=30% Similarity=0.630 Sum_probs=67.6
Q ss_pred CcEEEEEEecccCCcceeEEEeeCCEEeccccCCccCCCeeEe-----cCCeEEEeecCCCCCEeEEEEEEeCCCceEEE
Q psy12061 97 RNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINI-----DGGLLEITNASFADAGEYECVVKSTVGKISTK 171 (626)
Q Consensus 97 ~~~~l~C~~~~~p~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~-----~~~~l~i~~~~~~d~g~Y~C~a~n~~g~~~~~ 171 (626)
+++.|.|.+...|.+.++|.|+|||+++.... ...++.. ..+.|.|.+++..|+|.|+|.|.|..++.+++
T Consensus 1 ~~~~l~C~v~~d~~l~~~~~W~~dg~~i~~~~----~~~~~~~~~~~~~~~~L~I~nv~~~dsG~YtC~a~n~~~~~~a~ 76 (85)
T cd05853 1 ESIVLPCQVSHDHSLDIVFTWSFNGHLIDFQK----DGDHFERVGGQDSAGDLMIRSIQLKHAGKYVCMVQTSVDKLSAA 76 (85)
T ss_pred CcEEEEEEeccCCCCCcEEEEEECCEECcccC----CCccEEEeccCCCCCcEEEecCCHHHCEEEEEEEEcccCceEEE
Confidence 47899999999888888999999999996321 0123332 45789999999999999999999999999999
Q ss_pred EEEEEeCCC
Q psy12061 172 TTVIVEGPP 180 (626)
Q Consensus 172 ~~l~v~~~P 180 (626)
+.|.|.+||
T Consensus 77 a~L~V~~pP 85 (85)
T cd05853 77 ADLIVRGPP 85 (85)
T ss_pred EEEEEecCC
Confidence 999999987
No 63
>cd05848 Ig1_Contactin-5 First Ig domain of contactin-5. Ig1_Contactin-5: First Ig domain of the neural cell adhesion molecule contactin-5. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains, anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. In rats, a lack of contactin-5 (NB-2) results in an impairment of the neuronal activity in the auditory system. Contactin-5 is expressed specifically in the postnatal nervous system, peaking at about 3 weeks postnatal. Contactin-5 is highly expressed in the adult human brain in the occipital lobe and in the amygdala; lower levels of expression have been detected in the corpus callosum, caudate nucleus, and spinal cord.
Probab=99.60 E-value=7.7e-15 Score=110.08 Aligned_cols=70 Identities=34% Similarity=0.585 Sum_probs=58.8
Q ss_pred CCCceEEEEeeeCCCCCCeeEEEeCCEEccCCCc-EEEccCCcEEEccCC-CCCCEEEEEEEEcCCCCceee
Q psy12061 3 GEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGR-RKIFENGNLLISPVS-RDDSGIYSCTATNVHGMDESK 72 (626)
Q Consensus 3 ~~G~~~~l~C~~~g~p~p~i~W~~~~~~i~~~~~-~~~~~~g~L~i~~v~-~~d~G~Y~C~a~n~~g~~~~~ 72 (626)
.+|++++|.|.+.|.|.|+|+|+|||.+|....+ .....+|+|.|.++. .+|+|.|+|.|.|..|...+.
T Consensus 17 ~~g~~v~l~C~~~G~P~P~i~W~k~g~~l~~~~~~~~~~~~g~L~i~~~~~~~D~G~Y~C~A~N~~G~~~S~ 88 (94)
T cd05848 17 SDEKKVILNCEARGNPVPTYRWLRNGTEIDTESDYRYSLIDGNLIISNPSEVKDSGRYQCLATNSIGSILSR 88 (94)
T ss_pred CCCCEEEEEEEeeecCCCEEEEEECCeECccCCCceEEeeCCeEEEccCCccCcCEEEEEEEEcCCCeEEec
Confidence 3689999999999999999999999999974432 223457889999985 699999999999999987553
No 64
>cd05722 Ig1_Neogenin First immunoglobulin (Ig)-like domain in neogenin and similar proteins. Ig1_Neogenin: first immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.
Probab=99.60 E-value=6.1e-15 Score=111.67 Aligned_cols=76 Identities=42% Similarity=0.729 Sum_probs=64.4
Q ss_pred CCCCceEEEEeeeCCCCCCeeEEEeCCEEccCCC--cEEEccCCcEEEccC-----CCCCCEEEEEEEEcC-CCCce-ee
Q psy12061 2 AGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGG--RRKIFENGNLLISPV-----SRDDSGIYSCTATNV-HGMDE-SK 72 (626)
Q Consensus 2 ~~~G~~~~l~C~~~g~p~p~i~W~~~~~~i~~~~--~~~~~~~g~L~i~~v-----~~~d~G~Y~C~a~n~-~g~~~-~~ 72 (626)
+.+|++++|.|.+.|.|.|.|.|+|||..|.... ++.++.+|+|.|.++ +.+|+|.|+|.|.|. .|... ..
T Consensus 11 ~~~g~~v~l~C~v~g~P~p~i~W~k~g~~l~~~~~~~~~~~~~~~l~i~~v~~~~~~~~D~G~Y~C~a~N~~~G~~~s~~ 90 (95)
T cd05722 11 AVRGGPVVLNCSAEGEPPPKIEWKKDGVLLNLVSDERRQQLPNGSLLITSVVHSKHNKPDEGFYQCVAQNDSLGSIVSRT 90 (95)
T ss_pred EcCCCCEEEeeecccCCCCEEEEEECCeECccccCcceEEccCCeEEEeeeeccCCCCCcCEEEEEEEECCccCcEEEee
Confidence 4689999999999999999999999999997543 467777888998887 589999999999999 99864 45
Q ss_pred EEEEE
Q psy12061 73 GRLIV 77 (626)
Q Consensus 73 ~~l~v 77 (626)
+.|+|
T Consensus 91 ~~l~v 95 (95)
T cd05722 91 ARLTV 95 (95)
T ss_pred eEEeC
Confidence 66654
No 65
>cd05891 Ig_M-protein_C C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2). Ig_M-protein_C: the C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2). M-protein is a structural protein localized to the M-band, a transverse structure in the center of the sarcomere, and is a candidate for M-band bridges. M-protein is modular consisting mainly of repetitive IG-like and fibronectin type III (FnIII) domains, and has a muscle-type specific expression pattern. M-protein is present in fast fibers.
Probab=99.60 E-value=7e-15 Score=109.89 Aligned_cols=76 Identities=28% Similarity=0.430 Sum_probs=65.7
Q ss_pred CCCCceEEEEeeeCCCCCCeeEEEeCCEEccCCCcEEEc-cCC---cEEEccCCCCCCEEEEEEEEcCCCCceeeEEEEE
Q psy12061 2 AGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIF-ENG---NLLISPVSRDDSGIYSCTATNVHGMDESKGRLIV 77 (626)
Q Consensus 2 ~~~G~~~~l~C~~~g~p~p~i~W~~~~~~i~~~~~~~~~-~~g---~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~v 77 (626)
+.+|+++.|.|.+.|.|.|.+.|+|+|..+..+.++.+. .++ +|.|.+++.+|+|.|+|.|.|..|.......|.|
T Consensus 13 v~eG~~v~L~C~v~g~P~p~i~W~k~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~v~~ 92 (92)
T cd05891 13 IMEGKTLNLTCTVFGNPDPEVIWFKNDQDIELSEHYSVKLEQGKYASLTIKGVTSEDSGKYSINVKNKYGGETVDVTVSV 92 (92)
T ss_pred EcCCCEEEEEEEEEEeCCCeEEEEECCEECCCCCCEEEEEcCCCEEEEEECCCChhhCEEEEEEEEeCCCceeeEEEEEC
Confidence 579999999999999999999999999998876665542 222 6999999999999999999999999888777754
No 66
>cd05849 Ig1_Contactin-1 First Ig domain of contactin-1. Ig1_Contactin-1: First Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may, through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.
Probab=99.59 E-value=9.2e-15 Score=109.01 Aligned_cols=71 Identities=31% Similarity=0.560 Sum_probs=58.9
Q ss_pred CceEEEEeeeCCCCCCeeEEEeCCEEccCCCcEEEccCCcEEEccCC-CCCCEEEEEEEEcCCCCcee-eEEE
Q psy12061 5 GGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGNLLISPVS-RDDSGIYSCTATNVHGMDES-KGRL 75 (626)
Q Consensus 5 G~~~~l~C~~~g~p~p~i~W~~~~~~i~~~~~~~~~~~g~L~i~~v~-~~d~G~Y~C~a~n~~g~~~~-~~~l 75 (626)
|+.++|.|.+.|.|.|+|+|+|++..+........+.+|.|.|.++. .+|+|.|+|.|.|..|...+ .+.|
T Consensus 19 ~~~v~l~C~a~G~P~P~i~W~k~~~~i~~~~~~~~~~~g~L~I~~~~~~~D~G~Y~C~A~N~~G~~~s~~a~l 91 (93)
T cd05849 19 EGKVSVNCRARANPFPIYKWRKNNLDIDLTNDRYSMVGGNLVINNPDKYKDAGRYVCIVSNIYGKVRSREATL 91 (93)
T ss_pred CCeEEEeCcCccCCCCEEEEEECCEEccCCCCeEEEECCEEEECcCCcCCCCEEEEEEEEeCcceEEEccEEE
Confidence 45899999999999999999999999864333344567899999985 69999999999999998655 3454
No 67
>cd05760 Ig2_PTK7 Second immunoglobulin (Ig)-like domain of protein tyrosine kinase (PTK) 7, also known as CCK4. Ig2_PTK7: domain similar to the second immunoglobulin (Ig)-like domain in protein tyrosine kinase (PTK) 7, also known as CCK4. PTK7 is a subfamily of the receptor protein tyrosine kinase family, and is referred to as an RPTK-like molecule. RPTKs transduce extracellular signals across the cell membrane, and play important roles in regulating cell proliferation, migration, and differentiation. PTK7 is organized as an extracellular portion having seven Ig-like domains, a single transmembrane region, and a cytoplasmic tyrosine kinase-like domain. PTK7 is considered a pseudokinase as it has several unusual residues in some of the highly conserved tyrosine kinase (TK) motifs; it is predicted to lack TK activity. PTK7 may function as a cell-adhesion molecule. PTK7 mRNA is expressed at high levels in placenta, melanocytes, liver, lung, pancreas, and kidney. PTK7 is overexpressed in s
Probab=99.59 E-value=6.3e-15 Score=106.13 Aligned_cols=69 Identities=29% Similarity=0.593 Sum_probs=56.9
Q ss_pred EEEEeeeCCCCCCeeEEEeCCEEccCCC-cEEEcc-CCcEEEccCCCCCCEEEEEEEEcCCCCceeeEEEE
Q psy12061 8 VTIFCNPEAAPKPKFVWKKDGNIIGSGG-RRKIFE-NGNLLISPVSRDDSGIYSCTATNVHGMDESKGRLI 76 (626)
Q Consensus 8 ~~l~C~~~g~p~p~i~W~~~~~~i~~~~-~~~~~~-~g~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~ 76 (626)
++|.|.+.|.|.|.|.|+|+|.++..+. ++.+.. +++|.|.+++.+|+|.|+|.|.|..|...+.+.+.
T Consensus 1 v~L~C~~~g~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~s~~~~~ 71 (77)
T cd05760 1 VTLRCHIDGHPRPTYQWFRDGTPLSDGQGNYSVSSKERTLTLRSAGPDDSGLYYCCAHNAFGSVCSSQNFT 71 (77)
T ss_pred CEEEEEeeecCCCcEEEEECCEECCCCCccEEEeCCCCEEEEeeCCcccCEEEEEEEEeCCCeEeeCceEE
Confidence 5899999999999999999999997543 444433 45899999999999999999999999876544433
No 68
>cd05763 Ig_1 Subgroup of the immunoglobulin (Ig) superfamily. Ig_1: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=99.59 E-value=5.6e-15 Score=106.25 Aligned_cols=70 Identities=30% Similarity=0.575 Sum_probs=59.4
Q ss_pred EEEEeeeCCCCCCeeEEEeCCEEcc---CCCcEEEcc-CCcEEEccCCCCCCEEEEEEEEcCCCCceeeEEEEE
Q psy12061 8 VTIFCNPEAAPKPKFVWKKDGNIIG---SGGRRKIFE-NGNLLISPVSRDDSGIYSCTATNVHGMDESKGRLIV 77 (626)
Q Consensus 8 ~~l~C~~~g~p~p~i~W~~~~~~i~---~~~~~~~~~-~g~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~v 77 (626)
++|.|.+.|.|.|+|+|+|+|..+. ...++.+.. ++.|.|.+++.+|+|.|+|.|.|..|.....+.|.|
T Consensus 1 a~l~C~~~G~P~P~v~W~k~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~A~N~~G~~~~~~~l~V 74 (75)
T cd05763 1 ARLECAATGHPTPQIAWQKDGGTDFPAARERRMHVMPEDDVFFIVDVKIEDTGVYSCTAQNTAGSISANATLTV 74 (75)
T ss_pred CEeEeecccccCCEEEEEeCCCccCCcccccceEEecCCCEEEEeeCCcccCEEEEEEEEcCCCEEEeeEEEEE
Confidence 5799999999999999999986432 334555543 457999999999999999999999999999999887
No 69
>cd07702 Ig2_VEGFR-1 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1). Ig2_VEGFR-1: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1). VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-1 binds VEGF-A strongly; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-1 may play an inhibitory rolet in the function of VEGFR-2 by binding VEGF-A and interfering with its interaction with VEGFR-2. VEGFR-1 has a signaling role in mediating monocyte chemotaxis and may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.
Probab=99.59 E-value=6.6e-15 Score=102.47 Aligned_cols=66 Identities=23% Similarity=0.260 Sum_probs=54.0
Q ss_pred EEEEeeeCCCCCCeeEEEeCCEEccCCCcEEEccCCcEEEccCCCCCCEEEEEEEEcCCCCceeeE
Q psy12061 8 VTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTATNVHGMDESKG 73 (626)
Q Consensus 8 ~~l~C~~~g~p~p~i~W~~~~~~i~~~~~~~~~~~g~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~ 73 (626)
++|.|.+.|.|+|++.|+|||.++..+.......+++|.|.+++.+|+|.|+|.|.|.........
T Consensus 1 ~~l~c~v~g~P~P~v~W~kdg~~l~~~~~~~~~~~~~L~I~~v~~~D~G~YtC~a~~~~~~~~~~~ 66 (72)
T cd07702 1 YRLTPKVKAFPAPEVIWLKDGLPAAEKCSRYHVDGYSLVIKDVTEEDAGIYTILLGIKQYNLFKNL 66 (72)
T ss_pred CeEEeeEEEcCCCeEEEEECCEECCCCCcEEEeCCCEEEECcCCHHHCEEEEEEEEccccceEeeE
Confidence 479999999999999999999998765332333456899999999999999999999865544443
No 70
>cd05870 Ig5_NCAM-2 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM). Ig5_NCAM-2: the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.
Probab=99.59 E-value=6.8e-15 Score=111.96 Aligned_cols=76 Identities=32% Similarity=0.565 Sum_probs=63.3
Q ss_pred CCCCceEEEEeeeCCCCCCeeEEEe--CCEEcc-----CCCcEEEcc---CCcEEEccCCCCCCEEEEEEEEcCCCCcee
Q psy12061 2 AGEGGNVTIFCNPEAAPKPKFVWKK--DGNIIG-----SGGRRKIFE---NGNLLISPVSRDDSGIYSCTATNVHGMDES 71 (626)
Q Consensus 2 ~~~G~~~~l~C~~~g~p~p~i~W~~--~~~~i~-----~~~~~~~~~---~g~L~i~~v~~~d~G~Y~C~a~n~~g~~~~ 71 (626)
+.+|++++|.|.+.|.|.|.|.|+| ++..+. .++|+.+.. .++|.|.+|+.+|+|.|+|.|.|..|....
T Consensus 13 ~~~G~~v~l~C~~~G~P~p~i~W~k~~~g~~~~~~~~~~~~r~~v~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~ 92 (98)
T cd05870 13 TVENGAATLSCKAEGEPIPEITWKRASDGHTFSEGDKSPDGRIEVKGQHGESSLHIKDVKLSDSGRYDCEAASRIGGHQK 92 (98)
T ss_pred EcCCCcEEEEEecccCCCCeEEEEECCCCceeccCCcCcCceEEEeecCCeeEEEEeeCCcCCCEEEEEEEeccCCccee
Confidence 5789999999999999999999999 454443 234666643 247999999999999999999999999888
Q ss_pred eEEEEE
Q psy12061 72 KGRLIV 77 (626)
Q Consensus 72 ~~~l~v 77 (626)
.+.|.|
T Consensus 93 ~~~l~~ 98 (98)
T cd05870 93 SMYLDI 98 (98)
T ss_pred EEEEeC
Confidence 888764
No 71
>cd04974 Ig3_FGFR Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Ig3_FGFR: third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs.
Probab=99.59 E-value=7.7e-15 Score=109.40 Aligned_cols=73 Identities=30% Similarity=0.518 Sum_probs=58.9
Q ss_pred CceEEEEeeeCCCCCCeeEEEeCC----EEccCCC--cEEEc----------cCCcEEEccCCCCCCEEEEEEEEcCCCC
Q psy12061 5 GGNVTIFCNPEAAPKPKFVWKKDG----NIIGSGG--RRKIF----------ENGNLLISPVSRDDSGIYSCTATNVHGM 68 (626)
Q Consensus 5 G~~~~l~C~~~g~p~p~i~W~~~~----~~i~~~~--~~~~~----------~~g~L~i~~v~~~d~G~Y~C~a~n~~g~ 68 (626)
|++++|.|.+.|.|.|+|.|+|++ ..+..++ ...++ ..+.|.|.+|+.+|+|.|+|.|.|..|.
T Consensus 1 G~~v~l~C~v~g~P~P~i~W~k~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~ 80 (90)
T cd04974 1 GSDVEFHCKVYSDAQPHIQWLKHVEVNGSKYGPDGLPYVTVLKVAGINTTDNESEVLYLRNVSFDDAGEYTCLAGNSIGP 80 (90)
T ss_pred CCcEEEEEEEeCCCCCeEEEEEecccCCceeCCCCCceEEEEEecCCcccccccceEEEeccccccCcEEEEEeecccCc
Confidence 789999999999999999999963 3333221 11111 1246999999999999999999999999
Q ss_pred ceeeEEEEE
Q psy12061 69 DESKGRLIV 77 (626)
Q Consensus 69 ~~~~~~l~v 77 (626)
..+++.|.|
T Consensus 81 ~~~sa~L~V 89 (90)
T cd04974 81 SHHSAWLTV 89 (90)
T ss_pred ccCCEEEEe
Confidence 999999987
No 72
>cd05735 Ig8_DSCAM Eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM). Ig8_DSCAM: the eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.
Probab=99.59 E-value=1.4e-14 Score=107.16 Aligned_cols=80 Identities=20% Similarity=0.329 Sum_probs=67.4
Q ss_pred CCcEEEEEEecccCCcceeEEEeeCCEEeccccCCccCCCeeEe--------cCCeEEEeecCCCCCEeEEEEEEeCCCc
Q psy12061 96 HRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINI--------DGGLLEITNASFADAGEYECVVKSTVGK 167 (626)
Q Consensus 96 g~~~~l~C~~~~~p~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~--------~~~~l~i~~~~~~d~g~Y~C~a~n~~g~ 167 (626)
|+.++|.|.+.|.|.+ .+.|+|++..+.... .++.+ ..+.|.|.++..+|+|.|+|.|.|..|.
T Consensus 1 g~~~~l~C~~~g~p~~--~i~W~k~~~~i~~~~------~r~~~~~~~~~~~~~s~L~I~~~~~~D~G~YtC~A~N~~G~ 72 (88)
T cd05735 1 GQKKEMSCTAHGEKPI--IVRWEKEDRIINPEM------SRYLVSTKEVGDEVISTLQILPTVREDSGFFSCHAINSYGE 72 (88)
T ss_pred CCeEEEEEEEECCCCC--EEEEeeCCEECCCCC------CcEEEEEecCCCcEEEEEEECCCCcccCEEEEEEEEcCCCc
Confidence 7899999999999865 569999998885432 22221 1257999999999999999999999999
Q ss_pred eEEEEEEEEeCCCCCC
Q psy12061 168 ISTKTTVIVEGPPGLP 183 (626)
Q Consensus 168 ~~~~~~l~v~~~P~~p 183 (626)
.+..+.|.|..+|.+|
T Consensus 73 ~~~~~~L~V~~~P~~P 88 (88)
T cd05735 73 DRGIIQLTVQEPPDPP 88 (88)
T ss_pred ceEEEEEEEeCCCCCC
Confidence 9999999999999887
No 73
>cd05773 Ig8_hNephrin_like Eighth immunoglobulin-like domain of nephrin. Ig8_hNephrin_like: domain similar to the eighth immunoglobulin-like domain in human nephrin. Nephrin is an integral component of the slit diaphragm, and is a central component of the glomerular ultrafilter. Nephrin plays a structural role, and has a role in signaling. Nephrin is a transmembrane protein having a short intracellular portion, and an extracellular portion comprised of eight Ig-like domains, and one fibronectin type III-like domain. The extracellular portions of nephrin, from neighboring foot processes of separate podocyte cells, may interact with each other, and in association with other components of the slit diaphragm, form a porous molecular sieve within the slit pore. The intracellular portion of nephrin is associated with linker proteins, which connect nephrin to the actin cytoskeleton. The intracellular portion is tyrosine phosphorylated, and mediates signaling from the slit diaphragm into the p
Probab=99.58 E-value=1.8e-14 Score=111.29 Aligned_cols=79 Identities=25% Similarity=0.443 Sum_probs=66.5
Q ss_pred CCCceEEEEeeeCCCCCCeeEEEeCCEEccC-CCcEEEc--c-----CCcEEEccCC-CCCCEEEEEEEEcCCCCceeeE
Q psy12061 3 GEGGNVTIFCNPEAAPKPKFVWKKDGNIIGS-GGRRKIF--E-----NGNLLISPVS-RDDSGIYSCTATNVHGMDESKG 73 (626)
Q Consensus 3 ~~G~~~~l~C~~~g~p~p~i~W~~~~~~i~~-~~~~~~~--~-----~g~L~i~~v~-~~d~G~Y~C~a~n~~g~~~~~~ 73 (626)
..|++++|.|.+.|.|.|.+.|+|||..|.. +.|+.+. . .++|.|.++. .+|.|.|+|.|.|..|.....+
T Consensus 21 ~~g~~v~L~C~a~G~P~p~i~W~k~g~~l~~~~~r~~~~~~~~~~~~~s~L~I~~v~~~~D~G~Y~C~A~N~~G~~~~~i 100 (109)
T cd05773 21 DGSSDANLVCQAQGVPRVQFRWAKNGVPLDLGNPRYEETTEHTGTVHTSILTIINVSAALDYALFTCTAHNSLGEDSLDI 100 (109)
T ss_pred CCCCEEEEEEECcccCCCEEEEEECCEECCCCCCeEEEEeeccCccceeEEEECcCCccCCCEEEEEEEEeCCccCcEEE
Confidence 3578999999999999999999999999974 3455432 1 2469999997 5999999999999999999999
Q ss_pred EEEEEeCC
Q psy12061 74 RLIVLHGP 81 (626)
Q Consensus 74 ~l~v~~~p 81 (626)
.|.|...|
T Consensus 101 ~L~~~~~p 108 (109)
T cd05773 101 QLVSTSRP 108 (109)
T ss_pred EEEecCCC
Confidence 99997665
No 74
>cd05858 Ig3_FGFR-2 Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor 2 (FGFR2). Ig3_FGFR-2-like; domain similar to the third immunoglobulin (Ig)-like domain of human fibroblast growth factor receptor 2 (FGFR2). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs. FGFR2 is required for male sex determination.
Probab=99.58 E-value=1.1e-14 Score=108.71 Aligned_cols=73 Identities=27% Similarity=0.560 Sum_probs=59.9
Q ss_pred CceEEEEeeeCCCCCCeeEEEe----CCEEccCCCc--EEEccC----------CcEEEccCCCCCCEEEEEEEEcCCCC
Q psy12061 5 GGNVTIFCNPEAAPKPKFVWKK----DGNIIGSGGR--RKIFEN----------GNLLISPVSRDDSGIYSCTATNVHGM 68 (626)
Q Consensus 5 G~~~~l~C~~~g~p~p~i~W~~----~~~~i~~~~~--~~~~~~----------g~L~i~~v~~~d~G~Y~C~a~n~~g~ 68 (626)
|++++|.|.+.|.|.|.|.|+| +|..+..+++ ..+... ++|.|.+|+.+|+|.|+|.|.|..|.
T Consensus 1 G~~v~L~C~~~g~P~P~i~W~k~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~ 80 (90)
T cd05858 1 GSTVEFVCKVYSDAQPHIQWLKHVEKNGSKYGPDGLPYVTVLKTAGVNTTDKEMEVLYLRNVTFEDAGEYTCLAGNSIGI 80 (90)
T ss_pred CCeEEEEEEEecCCCCEEEEEEecccCCcEeCCCCCeeEEEeccCCceecCCceeEEEEccCCHHHCEEEEEEEEeCCCc
Confidence 7899999999999999999999 4555543322 222111 36999999999999999999999999
Q ss_pred ceeeEEEEE
Q psy12061 69 DESKGRLIV 77 (626)
Q Consensus 69 ~~~~~~l~v 77 (626)
....+.|.|
T Consensus 81 ~~~~a~L~V 89 (90)
T cd05858 81 SHHSAWLTV 89 (90)
T ss_pred ccceEEEEE
Confidence 999999987
No 75
>PF07679 I-set: Immunoglobulin I-set domain; InterPro: IPR013098 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents I-set domains, which are found in several cell adhesion molecules, including vascular (VCAM), intercellular (ICAM), neural (NCAM) and mucosal addressin (MADCAM) cell adhesion molecules, as well as junction adhesion molecules (JAM). I-set domains are also present in several other diverse protein families, including several tyrosine-protein kinase receptors, the hemolymph protein hemolin, the muscle proteins titin, telokin, and twitchin, the neuronal adhesion molecule axonin-1 [], and the signalling molecule semaphorin 4D that is involved in axonal guidance, immune function and angiogenesis [].; PDB: 3MTR_A 2EDK_A 3DMK_B 1KOA_A 3NCM_A 2NCM_A 2V9Q_A 2CR3_A 3QQN_A 3QR2_A ....
Probab=99.58 E-value=6.9e-15 Score=110.88 Aligned_cols=76 Identities=36% Similarity=0.640 Sum_probs=69.5
Q ss_pred CCCCceEEEEeeeCCCCCCeeEEEeCCEEccCCCcEEEccCC---cEEEccCCCCCCEEEEEEEEcCCCCceeeEEEEE
Q psy12061 2 AGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENG---NLLISPVSRDDSGIYSCTATNVHGMDESKGRLIV 77 (626)
Q Consensus 2 ~~~G~~~~l~C~~~g~p~p~i~W~~~~~~i~~~~~~~~~~~g---~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~v 77 (626)
+.+|++++|.|.+.|.|.|++.|+++|..|..+.++.+...+ +|.|.++..+|+|.|+|.|.|..|.....+.|.|
T Consensus 12 v~~G~~~~l~c~~~~~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~n~~g~~~~~~~l~V 90 (90)
T PF07679_consen 12 VKEGESVTLECEVSGNPPPTVTWYKNGRPLTSSQRYQIESDGGSSSLTIKNVTREDAGTYTCVASNSSGEATASVNLTV 90 (90)
T ss_dssp EETTSEEEEEEEEEESSSSEEEEEETTEEEESSSSEEEEEETTEEEEEESSESGGGSEEEEEEEEETTEEEEEEEEEEE
T ss_pred EeCCCEEEEEEEEEeCCCCcccccccccceeeeeeeeeecccceeEEccCCCChhhCEEEEEEEEECCCEEEEEEEEEC
Confidence 578999999999999999999999999999988888876543 6999999999999999999999999998888876
No 76
>cd04971 Ig_TrKABC_d5 Fifth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC. TrkABC_d5: the fifth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrkB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor foun
Probab=99.57 E-value=1.3e-14 Score=104.77 Aligned_cols=67 Identities=21% Similarity=0.330 Sum_probs=56.8
Q ss_pred EEeeeCCCCCCeeEEEeCCEEccCCCcEEEc----------cCCcEEEccCCCCCCEEEEEEEEcCCCCceeeEEEE
Q psy12061 10 IFCNPEAAPKPKFVWKKDGNIIGSGGRRKIF----------ENGNLLISPVSRDDSGIYSCTATNVHGMDESKGRLI 76 (626)
Q Consensus 10 l~C~~~g~p~p~i~W~~~~~~i~~~~~~~~~----------~~g~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~ 76 (626)
|.|.+.|.|.|+|+|+|||++|..+.++.+. ..+.|.|.+++.+|+|.|+|.|.|..|...+...+.
T Consensus 3 i~~~v~G~P~P~v~W~k~g~~i~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~YtC~A~N~~G~~~~~~~~~ 79 (81)
T cd04971 3 IPFTVRGNPKPTLTWYHNGAVLNESDYIRTEIHYEVTTPTEYHGCLQFDNPTHVNNGNYTLVASNEYGQDSKSISAH 79 (81)
T ss_pred EEEEeEeeCCCcEEEEECCEECcCCCceeEEEEeecccccccEEEEEECCCCcccCeEEEEEEEeCCCCeeeEEEee
Confidence 7899999999999999999999876544321 134699999999999999999999999988877664
No 77
>cd05731 Ig3_L1-CAM_like Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). Ig3_L1-CAM_like: domain similar to the third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM and human neurofascin.
Probab=99.57 E-value=9.2e-15 Score=104.32 Aligned_cols=70 Identities=30% Similarity=0.442 Sum_probs=59.0
Q ss_pred EEEEeeeCCCCCCeeEEEeCCEEccCCCcEEEccCCcEEEccCCCCCCEEEEEEEEcCCCCceeeEEEEE
Q psy12061 8 VTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTATNVHGMDESKGRLIV 77 (626)
Q Consensus 8 ~~l~C~~~g~p~p~i~W~~~~~~i~~~~~~~~~~~g~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~v 77 (626)
++|.|.+.|.|.|.+.|+|++..+..+.......++.|.|.+++.+|+|.|+|.|.|..|.....+.|.|
T Consensus 1 v~l~C~~~g~P~p~v~W~k~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V 70 (71)
T cd05731 1 LLLECIAEGLPTPEISWIKIGGELPADRTKFENFNKTLKIDNVSEEDDGEYRCTASNSLGSARHTISVTV 70 (71)
T ss_pred CEEEEEeeEecCCeEEEEECCeECCCCceeEecCCCEEEECCCCHHHCEEEEEEEEeCCceEEEEEEEEE
Confidence 5799999999999999999998876443222233568999999999999999999999999888888776
No 78
>cd05869 Ig5_NCAM-1 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). Ig5_NCAM-1: The fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM) and heterophilic (NCAM-non-NCAM) interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (tr
Probab=99.57 E-value=1.2e-14 Score=110.45 Aligned_cols=74 Identities=27% Similarity=0.471 Sum_probs=62.9
Q ss_pred CCceEEEEeeeCCCCCCeeEEEeCCEEccCC-----CcEEEccC---CcEEEccCCCCCCEEEEEEEEcCCCCceeeEEE
Q psy12061 4 EGGNVTIFCNPEAAPKPKFVWKKDGNIIGSG-----GRRKIFEN---GNLLISPVSRDDSGIYSCTATNVHGMDESKGRL 75 (626)
Q Consensus 4 ~G~~~~l~C~~~g~p~p~i~W~~~~~~i~~~-----~~~~~~~~---g~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l 75 (626)
.|++++|.|.+.|.|.|+|.|+|++..+... +++.+..+ +.|.|.+++.+|+|.|+|.|.|..|.....+.|
T Consensus 16 ~g~~v~l~C~~~G~P~P~v~W~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~~l 95 (97)
T cd05869 16 LEEQITLTCEASGDPIPSITWRTSTRNISSEEKTLDGHIVVRSHARVSSLTLKYIQYTDAGEYLCTASNTIGQDSQSMYL 95 (97)
T ss_pred cCCCEEEEEEeeEeCCCEEEEEECCccccCCccccCccEEEEcCccEEEEEEecCccCcCEEEEEEEecCCCCeeEEEEE
Confidence 4799999999999999999999999887532 34444333 379999999999999999999999999988888
Q ss_pred EE
Q psy12061 76 IV 77 (626)
Q Consensus 76 ~v 77 (626)
.|
T Consensus 96 ~v 97 (97)
T cd05869 96 EV 97 (97)
T ss_pred EC
Confidence 65
No 79
>cd05756 Ig1_IL1R_like First immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins. Ig1_IL1R_like: domain similar to the first immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.
Probab=99.57 E-value=8.2e-15 Score=109.27 Aligned_cols=76 Identities=26% Similarity=0.364 Sum_probs=63.6
Q ss_pred CCCCCceEEEEeeeCC-----CCCCeeEEEeCCEEccC----CCcEEEccCCcEEEccCCCCCCEEEEEEEEcCCCCcee
Q psy12061 1 YAGEGGNVTIFCNPEA-----APKPKFVWKKDGNIIGS----GGRRKIFENGNLLISPVSRDDSGIYSCTATNVHGMDES 71 (626)
Q Consensus 1 ~~~~G~~~~l~C~~~g-----~p~p~i~W~~~~~~i~~----~~~~~~~~~g~L~i~~v~~~d~G~Y~C~a~n~~g~~~~ 71 (626)
++.+|+.+.|.|.+.| .|.|+|.|+|+|.++.. ..|+.. .+++|.|.++..+|+|.|.|.|.|..|....
T Consensus 10 ~v~~G~~~~L~C~~~g~~~~~~p~~~v~Wyk~~~~~~~~~~~~~r~~~-~~~~L~I~~~~~~DsG~Y~C~~~N~~g~~~~ 88 (94)
T cd05756 10 YVLEGEPVVIKCPLFYSYIAQSPGLNLTWYKSDGKTPIPTEERSRMHQ-QKDLLWFLPAALEDSGLYTCVVRNSTYCMKV 88 (94)
T ss_pred EEecCCCeEEECCCCCcccccCCCceEEEEEcCCCCcccccccceeee-cCCeEEEccCCcccCeEEEEEEcCCCccEEE
Confidence 4679999999999999 68999999999976532 233322 4678999999999999999999999999888
Q ss_pred eEEEEE
Q psy12061 72 KGRLIV 77 (626)
Q Consensus 72 ~~~l~v 77 (626)
.+.|.|
T Consensus 89 ~~~L~v 94 (94)
T cd05756 89 SISLTV 94 (94)
T ss_pred EEEEEC
Confidence 888765
No 80
>cd05850 Ig1_Contactin-2 First Ig domain of contactin-2. Ig1_Contactin-2: First Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c
Probab=99.57 E-value=3.1e-14 Score=106.89 Aligned_cols=71 Identities=32% Similarity=0.536 Sum_probs=58.6
Q ss_pred CCceEEEEeeeCCCCCCeeEEEeCCEEccCC--CcEEEccCCcEEEccCC-CCCCEEEEEEEEcCCCCcee-eEEE
Q psy12061 4 EGGNVTIFCNPEAAPKPKFVWKKDGNIIGSG--GRRKIFENGNLLISPVS-RDDSGIYSCTATNVHGMDES-KGRL 75 (626)
Q Consensus 4 ~G~~~~l~C~~~g~p~p~i~W~~~~~~i~~~--~~~~~~~~g~L~i~~v~-~~d~G~Y~C~a~n~~g~~~~-~~~l 75 (626)
+|++++|.|.+.|+|.|+|.|+|||..|... .++.+ .+|+|.|.++. .+|+|.|+|.|.|..|...+ .+.|
T Consensus 18 ~g~~v~l~C~a~g~P~p~i~W~~~g~~l~~~~~~~~~~-~~g~L~I~~~~~~~D~G~Y~C~A~N~~G~~~s~~a~l 92 (94)
T cd05850 18 PEEKVTLGCRARASPPATYRWKMNGTEIKFAPESRYTL-VAGNLVINNPQKARDAGSYQCLAINRCGTVVSREANL 92 (94)
T ss_pred CCCeEEEEeEceeCCCCEEEEEECCEECccCCCceEEE-ECCeEEEccCCccCcCEEEEEEEEcCcCcEEEEEEEE
Confidence 4578999999999999999999999999633 34444 57889998866 59999999999999998765 3444
No 81
>cd05732 Ig5_NCAM-1_like Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM) and similar proteins. Ig5_NCAM-1 like: domain similar to the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM mole
Probab=99.55 E-value=2.5e-14 Score=109.06 Aligned_cols=76 Identities=30% Similarity=0.517 Sum_probs=63.7
Q ss_pred CCCCceEEEEeeeCCCCCCeeEEEeCCEEccCC-----CcEEEccC---CcEEEccCCCCCCEEEEEEEEcCCCCceeeE
Q psy12061 2 AGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSG-----GRRKIFEN---GNLLISPVSRDDSGIYSCTATNVHGMDESKG 73 (626)
Q Consensus 2 ~~~G~~~~l~C~~~g~p~p~i~W~~~~~~i~~~-----~~~~~~~~---g~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~ 73 (626)
+.+|++++|.|.+.|.|.|.|.|+|++..+... +++.+..+ +.|.|.+++.+|+|.|+|.|.|..|.....+
T Consensus 13 ~~~g~~v~l~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~s~ 92 (96)
T cd05732 13 AVELEQITLTCEAEGDPIPEITWRRATRNFSEGDKSLDGRIVVRGHARVSSLTLKDVQLTDAGRYDCEASNRIGGDQQSM 92 (96)
T ss_pred EecCCcEEEEEEEeEcCCCcEEEEECCcccCCCCccccceEEEeCCccEEEEEECcCCcCcCEEeEEEEEeCCCCcEEEE
Confidence 468999999999999999999999998776532 34444332 3699999999999999999999999988887
Q ss_pred EEEE
Q psy12061 74 RLIV 77 (626)
Q Consensus 74 ~l~v 77 (626)
.|.|
T Consensus 93 ~l~v 96 (96)
T cd05732 93 YLEV 96 (96)
T ss_pred EEeC
Confidence 7754
No 82
>cd04968 Ig3_Contactin_like Third Ig domain of contactin. Ig3_Contactin_like: Third Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week
Probab=99.55 E-value=7.3e-14 Score=104.11 Aligned_cols=88 Identities=25% Similarity=0.454 Sum_probs=73.1
Q ss_pred CceeeeCCCceEEecCCcEEEEEEecccCCcceeEEEeeCCEEeccccCCccCCCeeEecCCeEEEeecCCCCCEeEEEE
Q psy12061 81 PSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEITNASFADAGEYECV 160 (626)
Q Consensus 81 p~~~~~~~~~~~v~~g~~~~l~C~~~~~p~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~ 160 (626)
|.++...|.+..+.+|++++|.|.+.|.|.|. +.|+|++..+... ......++.|.|.+++.+|+|.|+|.
T Consensus 1 p~~~~~~p~~~~~~~g~~v~l~C~~~g~P~p~--v~W~k~~~~~~~~-------~~~~~~~~~L~i~~v~~~D~G~Y~C~ 71 (88)
T cd04968 1 PSIIVVFPKDTYALKGQNVTLECFALGNPVPQ--IKWRKVDGSMPSS-------AEISMSGAVLKIPNIQFEDEGTYECE 71 (88)
T ss_pred CCcEEECCCceEEeCCCcEEEEEEeeEeCCCE--EEEEECCCcCCCc-------cEEEEeCCEEEECCCCcccCEEEEEE
Confidence 34455567888999999999999999999874 5899988766433 22335778999999999999999999
Q ss_pred EEeCCCceEEEEEEEEe
Q psy12061 161 VKSTVGKISTKTTVIVE 177 (626)
Q Consensus 161 a~n~~g~~~~~~~l~v~ 177 (626)
|.|..|..+..+.|.|.
T Consensus 72 a~N~~G~~~~~~~l~V~ 88 (88)
T cd04968 72 AENIKGKDTHQGRIYVQ 88 (88)
T ss_pred EEECCCcEEEEEEEEEC
Confidence 99999999999988873
No 83
>cd04970 Ig6_Contactin_like Sixth Ig domain of contactin. Ig6_Contactin_like: Sixth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week
Probab=99.54 E-value=5.5e-14 Score=103.88 Aligned_cols=84 Identities=31% Similarity=0.575 Sum_probs=67.4
Q ss_pred CcEEEEEEecccCCcceeEEEeeCCEEeccccCCc-cCCCeeEecCCeEEEeecCCCCCEeEEEEEEeCCCceEEEEEEE
Q psy12061 97 RNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNE-LETPNINIDGGLLEITNASFADAGEYECVVKSTVGKISTKTTVI 175 (626)
Q Consensus 97 ~~~~l~C~~~~~p~p~~~i~W~~~~~~~~~~~~~~-~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~a~n~~g~~~~~~~l~ 175 (626)
++++|.|.+.+.|.|.+++.|+|+|..+....... ..........+.|.|.+++..|+|.|+|.|.|..|..++++.|.
T Consensus 1 e~~~L~C~~~g~P~p~i~~~W~~~g~~i~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~~~~~l~ 80 (85)
T cd04970 1 ESITLQCHASHDPTLDLTFTWSFNGVPIDFDKDGGHYRRVGGKDSNGDLMIRNAQLKHAGKYTCTAQTVVDSLSASADLI 80 (85)
T ss_pred CcEEEEEEEecCCCCCeEEEEEECCeEeeccCCCccEEEEecccccceEEEccCCHHhCeeeEEEEecCCCcEEEEEEEE
Confidence 47899999999999888889999999986432100 00011122567899999999999999999999999999999999
Q ss_pred EeCCC
Q psy12061 176 VEGPP 180 (626)
Q Consensus 176 v~~~P 180 (626)
|.++|
T Consensus 81 V~~pP 85 (85)
T cd04970 81 VRGPP 85 (85)
T ss_pred EECCC
Confidence 99876
No 84
>cd05745 Ig3_Peroxidasin Third immunoglobulin (Ig)-like domain of peroxidasin. Ig3_Peroxidasin: the third immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells which have undergone programmed cell death, and protection of the organism against non-self.
Probab=99.54 E-value=5e-14 Score=100.80 Aligned_cols=74 Identities=23% Similarity=0.441 Sum_probs=62.8
Q ss_pred cCCcEEEEEEecccCCcceeEEEeeCCEEeccccCCccCCCeeEecCCeEEEeecCCCCCEeEEEEEEeCCCceEEEEEE
Q psy12061 95 AHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEITNASFADAGEYECVVKSTVGKISTKTTV 174 (626)
Q Consensus 95 ~g~~~~l~C~~~~~p~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~a~n~~g~~~~~~~l 174 (626)
+|+++.|.|.+.|.|.|. |.|+|+|..+.... ......++.|.|.+++.+|+|.|+|.|.|..|..+..+.|
T Consensus 1 eG~~v~l~C~~~g~P~p~--i~W~k~g~~~~~~~------~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~~L 72 (74)
T cd05745 1 EGQTVDFLCEAQGYPQPV--IAWTKGGSQLSVDR------RHLVLSSGTLRISRVALHDQGQYECQAVNIVGSQRTVAQL 72 (74)
T ss_pred CCCeEEEEeECCEecCCE--EEEEECCEECCCCC------CeEEccCCeEEEeeCCHHhCEEEEEEEEeCCCceeEEEEE
Confidence 589999999999999885 58999999886532 2223466799999999999999999999999999998888
Q ss_pred EE
Q psy12061 175 IV 176 (626)
Q Consensus 175 ~v 176 (626)
.|
T Consensus 73 ~V 74 (74)
T cd05745 73 TV 74 (74)
T ss_pred eC
Confidence 64
No 85
>cd05728 Ig4_Contactin-2-like Fourth Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins. Ig4_Contactin-2-like: fourth Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.
Probab=99.53 E-value=7.7e-14 Score=102.80 Aligned_cols=82 Identities=27% Similarity=0.497 Sum_probs=72.1
Q ss_pred eCCCceEEecCCcEEEEEEecccCCcceeEEEeeCCEEeccccCCccCCCeeEecCCeEEEeecCCCCCEeEEEEEEeCC
Q psy12061 86 QLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEITNASFADAGEYECVVKSTV 165 (626)
Q Consensus 86 ~~~~~~~v~~g~~~~l~C~~~~~p~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~a~n~~ 165 (626)
..|.+..+..|++++|.|.+.|.|.| .+.|+|+|..+... .++...++.|.|.++..+|+|.|+|.|.|..
T Consensus 4 ~~p~~~~~~~G~~~~l~C~~~g~p~p--~v~W~k~g~~~~~~-------~~~~~~~~~L~i~~~~~~D~G~Y~C~a~N~~ 74 (85)
T cd05728 4 KVISDTEADIGSSLRWECKASGNPRP--AYRWLKNGQPLASE-------NRIEVEAGDLRITKLSLSDSGMYQCVAENKH 74 (85)
T ss_pred ccCCccEEcCCCcEEEEEEeeEeCCC--EEEEEECCEECCCC-------CeEEEeCCEEEEeeCCHHHCEEEEEEEECCC
Confidence 35788999999999999999999987 46999999988643 4566678899999999999999999999999
Q ss_pred CceEEEEEEEE
Q psy12061 166 GKISTKTTVIV 176 (626)
Q Consensus 166 g~~~~~~~l~v 176 (626)
|...+++.|.|
T Consensus 75 G~~~~~~~l~V 85 (85)
T cd05728 75 GTIYASAELAV 85 (85)
T ss_pred CeEEEEEEEEC
Confidence 99998888764
No 86
>cd05734 Ig7_DSCAM Seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM). Ig7_DSCAM: the seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.
Probab=99.53 E-value=3.9e-14 Score=102.96 Aligned_cols=69 Identities=38% Similarity=0.619 Sum_probs=56.2
Q ss_pred EEEEeeeCCCCCCeeEEEeCCEEc--------cCCCcEEEccCCcEEEccCCCCCCEEEEEEEEcCCCCce-eeEEEE
Q psy12061 8 VTIFCNPEAAPKPKFVWKKDGNII--------GSGGRRKIFENGNLLISPVSRDDSGIYSCTATNVHGMDE-SKGRLI 76 (626)
Q Consensus 8 ~~l~C~~~g~p~p~i~W~~~~~~i--------~~~~~~~~~~~g~L~i~~v~~~d~G~Y~C~a~n~~g~~~-~~~~l~ 76 (626)
|+|.|.+.|.|.|.|.|+|++... ..++|+.+..+++|.|.++..+|+|.|+|.|.|..|... ..+.|.
T Consensus 1 v~l~C~~~G~P~P~v~W~~~~~~~~~~~~~~~~~~~r~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~s~~~~l~ 78 (79)
T cd05734 1 VTLNCSAEGYPPPTIVWKHSKGRGHPQHTHTCCLAGRIQLLSNGSLLIKHVLEEDSGYYLCKVSNDVGADASKSMVLT 78 (79)
T ss_pred CEeEeeCeEeCCCEEEEEECCCccccccccccccCCCEEEecCCeEEECcCCcccCEEEEEEEEeCCCCCCceEEEEe
Confidence 589999999999999999964321 134677777789999999999999999999999999863 345554
No 87
>cd07693 Ig1_Robo First immunoglobulin (Ig)-like domain in Robo (roundabout) receptors and similar proteins. Ig1_Robo: domain similar to the first immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit res
Probab=99.53 E-value=6.6e-14 Score=108.17 Aligned_cols=76 Identities=29% Similarity=0.586 Sum_probs=60.6
Q ss_pred CCCCceEEEEeeeCCCCCCeeEEEeCCEEccC-----CCcEEEccCCcEEEcc-----CCCCCCEEEEEEEEcCCCC-ce
Q psy12061 2 AGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGS-----GGRRKIFENGNLLISP-----VSRDDSGIYSCTATNVHGM-DE 70 (626)
Q Consensus 2 ~~~G~~~~l~C~~~g~p~p~i~W~~~~~~i~~-----~~~~~~~~~g~L~i~~-----v~~~d~G~Y~C~a~n~~g~-~~ 70 (626)
+.+|++++|.|.+.|.|.|.|.|+|+|..+.. ..+..++.+|.+.+.. ++.+|+|.|+|.|.|..|. .+
T Consensus 13 v~~G~~~~l~C~~~g~P~p~i~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~D~G~Y~C~a~N~~G~~~s 92 (100)
T cd07693 13 VSKGDPATLNCKAEGRPTPTIQWLKNGQPLETDKDDPRSHRIVLPSGSLFFLRVVHGRKGRSDEGVYVCVAHNSLGEAVS 92 (100)
T ss_pred EcCCCeEEEEeeCCcCCCCEEEEEECCEECccccCCCCcceEEecCCcEEEEEeeccCCCcCcCEEEEEEEEccccceec
Confidence 56899999999999999999999999999865 2344455566543332 3689999999999999999 55
Q ss_pred eeEEEEE
Q psy12061 71 SKGRLIV 77 (626)
Q Consensus 71 ~~~~l~v 77 (626)
..+.|.|
T Consensus 93 ~~~~l~v 99 (100)
T cd07693 93 RNASLEV 99 (100)
T ss_pred ceEEEEe
Confidence 6677766
No 88
>cd05856 Ig2_FGFRL1-like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1). Ig2_FGFRL1-like: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1). FGFRL1 is comprised of a signal peptide, three extracellular Ig-like modules, a transmembrane segment, and a short intracellular domain. FGFRL1 is expressed preferentially in skeletal tissues. Similar to FGF receptors, the expressed protein interacts specifically with heparin and with FGF2. FGFRL1 does not have a protein tyrosine kinase domain at its C terminus; neither does its cytoplasmic domain appear to interact with a signaling partner. It has been suggested that FGFRL1 may not have any direct signaling function, but instead acts as a decoy receptor trapping FGFs and preventing them from binding other receptors.
Probab=99.53 E-value=3.8e-14 Score=104.65 Aligned_cols=75 Identities=23% Similarity=0.409 Sum_probs=62.4
Q ss_pred CCCceEEEEeeeCCCCCCeeEEEeCCEEccCCCcEEEc-cCCcEEEccCCCCCCEEEEEEEEcCCCCceeeEEEEE
Q psy12061 3 GEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIF-ENGNLLISPVSRDDSGIYSCTATNVHGMDESKGRLIV 77 (626)
Q Consensus 3 ~~G~~~~l~C~~~g~p~p~i~W~~~~~~i~~~~~~~~~-~~g~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~v 77 (626)
..|++++|.|.+.|.|.|.+.|+|++..+......... ...+|.|.+++.+|+|.|.|.|.|..|.....+.|.|
T Consensus 7 ~~G~~v~L~C~~~g~p~p~i~W~k~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~~v~v 82 (82)
T cd05856 7 PVGSSVRLKCVASGNPRPDITWLKDNKPLTPTEIGESRKKKWTLSLKNLKPEDSGKYTCHVSNRAGEINATYKVDV 82 (82)
T ss_pred cCCCeEEEEEEeeEeCCCcEEEEECCcCCcCCccceecCceEEEEEccCChhhCEEEEEEEEcCCccEEEEEEEeC
Confidence 46999999999999999999999999988654333222 2347999999999999999999999998777776654
No 89
>cd05736 Ig2_Follistatin_like Second immunoglobulin (Ig)-like domain of a follistatin-like molecule encoded by the Mahya gene and similar proteins. Ig2_Follistatin_like: domain similar to the second immunoglobulin (Ig)-like domain found in a follistatin-like molecule encoded by the CNS-related Mahya gene. Mahya genes have been retained in certain Bilaterian branches during evolution. They are conserved in Hymenoptera and Deuterostomes, but are absent from other metazoan species such as fruit fly and nematode. Mahya proteins are secretory, with a follistatin-like domain (Kazal-type serine/threonine protease inhibitor domain and EF-hand calcium-binding domain), two Ig-like domains, and a novel C-terminal domain. Mahya may be involved in learning and memory and in processing of sensory information in Hymenoptera and vertebrates. Follistatin is a secreted, multidomain protein that binds activins with high affinity and antagonizes their signaling.
Probab=99.53 E-value=9.2e-14 Score=100.30 Aligned_cols=71 Identities=35% Similarity=0.644 Sum_probs=62.1
Q ss_pred EEEEeeeCCCCCCeeEEEeCCEEccCC--CcEEEccCC-cEEEccCCCCCCEEEEEEEEcCCCCceeeEEEEEE
Q psy12061 8 VTIFCNPEAAPKPKFVWKKDGNIIGSG--GRRKIFENG-NLLISPVSRDDSGIYSCTATNVHGMDESKGRLIVL 78 (626)
Q Consensus 8 ~~l~C~~~g~p~p~i~W~~~~~~i~~~--~~~~~~~~g-~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~v~ 78 (626)
+.|.|.+.|.|.|.|.|+|++..|..+ .++.+..++ .|.|.++..+|+|.|+|.|.|..|.....+.|.|.
T Consensus 1 ~~L~C~v~g~P~p~v~W~k~~~~l~~~~~~~~~~~~~~~~l~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~V~ 74 (76)
T cd05736 1 ASLRCHAEGIPLPRLTWLKNGMDITPKLSKQLTLIANGSELHISNVRYEDTGAYTCIAKNEAGVDEDISSLFVE 74 (76)
T ss_pred CEeEeEeeecCCCEEEEEECCEECCCCCCccEEEeCCCCEEEECcCCcccCEEEEEEEEcCCCCcceEEEEEEE
Confidence 479999999999999999999998754 355555555 59999999999999999999999999999999884
No 90
>cd05765 Ig_3 Subgroup of the immunoglobulin (Ig) superfamily. Ig_3: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=99.52 E-value=6.5e-14 Score=102.93 Aligned_cols=73 Identities=29% Similarity=0.581 Sum_probs=59.8
Q ss_pred CceEEEEeeeCCCCCCeeEEEeCCE-----EccCC---CcEEEccCCcEEEccCCCCCCEEEEEEEEcCCCCceeeEEEE
Q psy12061 5 GGNVTIFCNPEAAPKPKFVWKKDGN-----IIGSG---GRRKIFENGNLLISPVSRDDSGIYSCTATNVHGMDESKGRLI 76 (626)
Q Consensus 5 G~~~~l~C~~~g~p~p~i~W~~~~~-----~i~~~---~~~~~~~~g~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~ 76 (626)
|++++|.|.+.|.|.|.|.|+|++. .+..+ .++.+...++|.|.+++.+|+|.|+|.|.|..|.....+.|.
T Consensus 1 G~~v~l~C~~~g~P~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~ 80 (81)
T cd05765 1 GETASFHCDVTGRPPPEITWEKQVHGKENLIMRPNHVRGNVVVTNIGQLVIYNAQPQDAGLYTCTARNSGGLLRANFPLS 80 (81)
T ss_pred CCcEEEEeeccccCCCcEEEEecCCCCcceeecCCcccCCEEEccccEEEEccCCcccCEEEEEEEecCCceEEEEEEEe
Confidence 7899999999999999999999732 12111 233444557899999999999999999999999988888876
Q ss_pred E
Q psy12061 77 V 77 (626)
Q Consensus 77 v 77 (626)
|
T Consensus 81 v 81 (81)
T cd05765 81 V 81 (81)
T ss_pred C
Confidence 5
No 91
>cd05758 Ig5_KIRREL3-like Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2) and similar proteins. Ig5_KIRREL3-like: domain similar to the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.
Probab=99.52 E-value=6.3e-14 Score=106.63 Aligned_cols=75 Identities=31% Similarity=0.416 Sum_probs=64.0
Q ss_pred CCCCCceEEEEeeeCCCCCC-eeEEEeCCEEccC--CCcEEEccC-------CcEEEccCCC-CCCEEEEEEEEcCCCCc
Q psy12061 1 YAGEGGNVTIFCNPEAAPKP-KFVWKKDGNIIGS--GGRRKIFEN-------GNLLISPVSR-DDSGIYSCTATNVHGMD 69 (626)
Q Consensus 1 ~~~~G~~~~l~C~~~g~p~p-~i~W~~~~~~i~~--~~~~~~~~~-------g~L~i~~v~~-~d~G~Y~C~a~n~~g~~ 69 (626)
++.+|+++.|.|.+.|.|.| .|.|++++..|.. +.|+.+..+ ++|.|.+++. +|.|.|.|.|.|..|..
T Consensus 12 ~~~~G~~v~L~C~~~g~P~P~~v~W~~~~~~i~~~~~~r~~i~~~~~~~~~~s~L~I~~v~~~d~~G~Y~C~A~N~~G~~ 91 (98)
T cd05758 12 YAILGDKGRVECFIFSTPPPDRIVWTWKENELESGSSGRYTVETDPSPGGVLSTLTISNTQESDFQTSYNCTAWNSFGSG 91 (98)
T ss_pred EEeCCCcEEEEEEEcccCCCCEeEEEECCEEccCCCCCCEEEEEecCCCceEEEEEECCccccccceeEEEEEEcCCCcc
Confidence 36789999999999999999 6999999999874 357777654 2699999999 55999999999999998
Q ss_pred eeeEEE
Q psy12061 70 ESKGRL 75 (626)
Q Consensus 70 ~~~~~l 75 (626)
...+.|
T Consensus 92 ~~~~~L 97 (98)
T cd05758 92 TAIISL 97 (98)
T ss_pred cEEEEe
Confidence 877665
No 92
>cd05852 Ig5_Contactin-1 Fifth Ig domain of contactin-1. Ig5_Contactin-1: fifth Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.
Probab=99.52 E-value=7.2e-14 Score=98.73 Aligned_cols=72 Identities=25% Similarity=0.460 Sum_probs=62.1
Q ss_pred CCcEEEEEEecccCCcceeEEEeeCCEEeccccCCccCCCeeEe-cCCeEEEeecCCCCCEeEEEEEEeCCCceEEEEEE
Q psy12061 96 HRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINI-DGGLLEITNASFADAGEYECVVKSTVGKISTKTTV 174 (626)
Q Consensus 96 g~~~~l~C~~~~~p~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~-~~~~l~i~~~~~~d~g~Y~C~a~n~~g~~~~~~~l 174 (626)
|+++.|.|.+.+.|.| +|.|+|++..+... .++.+ .++.|.|.+++.+|+|.|+|.|.|..|..+.++.|
T Consensus 1 G~~~~l~C~~~g~P~p--~v~W~k~~~~l~~~-------~r~~~~~~g~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~~l 71 (73)
T cd05852 1 GGRVIIECKPKAAPKP--KFSWSKGTELLVNN-------SRISIWDDGSLEILNITKLDEGSYTCFAENNRGKANSTGVL 71 (73)
T ss_pred CCeEEEEEecceeCCC--EEEEEeCCEecccC-------CCEEEcCCCEEEECcCChhHCEEEEEEEECCCCceeEEEEE
Confidence 7899999999999987 55899999877543 45544 66899999999999999999999999999999988
Q ss_pred EE
Q psy12061 175 IV 176 (626)
Q Consensus 175 ~v 176 (626)
.|
T Consensus 72 ~~ 73 (73)
T cd05852 72 SV 73 (73)
T ss_pred EC
Confidence 64
No 93
>cd04975 Ig4_SCFR_like Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR) and similar proteins. Ig4_SCFR_like; fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR). In addition to SCFR this group also includes the fourth Ig domain of platelet-derived growth factor receptors (PDGFR), alpha and beta, the fourth Ig domain of macrophage colony stimulating factor (M-CSF), and the Ig domain of the receptor tyrosine kinase KIT. SCFR and the PDGFR alpha and beta have similar organization: an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR, this fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth SCFR_Ig-like domain abolishes
Probab=99.51 E-value=1.7e-13 Score=103.36 Aligned_cols=83 Identities=16% Similarity=0.137 Sum_probs=68.0
Q ss_pred CCceEEecCCcEEEEEEecc-cCCcceeEEEeeCCEEeccccCCccCCCeeE-------ecCCeEEEeecCCCCCEeEEE
Q psy12061 88 PPKITIAAHRNLQLRCSAHT-EELLDVAYIWTHNGVRIGNMDLNELETPNIN-------IDGGLLEITNASFADAGEYEC 159 (626)
Q Consensus 88 ~~~~~v~~g~~~~l~C~~~~-~p~p~~~i~W~~~~~~~~~~~~~~~~~~~~~-------~~~~~l~i~~~~~~d~g~Y~C 159 (626)
...+.+.+|++++|.|.+.+ .|+| .+.|+|||.++..... ..+. ...+.|.|..+..+|+|.|+|
T Consensus 10 ~~~~~v~~G~~v~L~c~v~g~~P~p--~v~W~Kdg~~i~~~~~-----~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Ytc 82 (101)
T cd04975 10 NTTIFVNLGENLNLVVEVEAYPPPP--HINWTYDNRTLTNKLT-----EIVTSENESEYRYVSELKLVRLKESEAGTYTF 82 (101)
T ss_pred CceEEEECCCCEEEEEEEEecCCCC--ccEEEeCCeeCCCCcc-----eeEEEeccCcceEEEEEEEeecCHhhCeeEEE
Confidence 35678999999999999999 7876 4589999999974321 1111 124789999999999999999
Q ss_pred EEEeCCCceEEEEEEEEe
Q psy12061 160 VVKSTVGKISTKTTVIVE 177 (626)
Q Consensus 160 ~a~n~~g~~~~~~~l~v~ 177 (626)
.|.|..|..+..+.|.|.
T Consensus 83 ~A~N~~G~~~~t~~L~V~ 100 (101)
T cd04975 83 LASNSDASKSLTFELYVN 100 (101)
T ss_pred EEECCCccEEEEEEEEEE
Confidence 999999999999999875
No 94
>cd05749 Ig2_Tyro3_like Second immunoglobulin (Ig)-like domain of Axl/Tyro3 receptor tyrosine kinases (RTKs). Ig2_Tyro3_like: the second immunoglobulin (Ig)-like domain in the Axl/Tyro3 family of receptor tyrosine kinases (RTKs). This family includes Axl (also known as Ark, Ufo, and Tyro7), Tyro3 (also known as Sky, Rse, Brt, Dtk, and Tif), and Mer (also known as Nyk, c-Eyk, and Tyro12). Axl/Tyro3 family receptors have an extracellular portion with two Ig-like domains followed by two fibronectin-types III (FNIII) domains, a membrane-spanning single helix, and a cytoplasmic tyrosine kinase domain. Axl, Tyro3 and Mer are widely expressed in adult tissues, though they show higher expression in the brain, in the lymphatic and vascular systems, and in the testis. Axl, Tyro3, and Mer bind the vitamin K dependent protein Gas6 with high affinity, and in doing so activate their tyrosine kinase activity. Axl/Gas6 signaling may play a part in cell adhesion processes, prevention of apoptosis, and c
Probab=99.51 E-value=6.3e-14 Score=100.75 Aligned_cols=65 Identities=20% Similarity=0.483 Sum_probs=54.5
Q ss_pred CCCCceEEEEeeeCCCCCC-eeEEEeCCEEccCCCcEEEccCCcEEEccCCCCCCEEEEEEEEcCCCCcee
Q psy12061 2 AGEGGNVTIFCNPEAAPKP-KFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTATNVHGMDES 71 (626)
Q Consensus 2 ~~~G~~~~l~C~~~g~p~p-~i~W~~~~~~i~~~~~~~~~~~g~L~i~~v~~~d~G~Y~C~a~n~~g~~~~ 71 (626)
|.+|+++.|.|.+.|.|.| +|.|+|||.+|.. +.. ...+.|.|..+ .|+|.|+|.|+|..|...+
T Consensus 10 v~~G~~v~l~C~a~G~P~P~~I~W~k~g~~l~~--~~~-~~~s~L~i~~~--~d~g~Y~C~A~N~~G~~~s 75 (81)
T cd05749 10 VTANTPFNLTCQAVGPPEPVEILWWQGGSPLGD--PPA-PSPSVLNVPGL--NETSKFSCEAHNAKGVTTS 75 (81)
T ss_pred EcCCCCEEEEEEeeeecCCeEEEEEECCEECCC--CCC-CCCCEEEEccc--cCCeEEEEEEEeccCcEEe
Confidence 6799999999999999999 7999999999864 111 13457999887 4889999999999998665
No 95
>cd05875 Ig6_hNeurofascin_like Sixth immunoglobulin (Ig)-like domain of human neurofascin (NF). Ig6_hNeurofascin_like: the sixth immunoglobulin (Ig)-like domain of human neurofascin (NF). NF belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and a cytoplasmic domain. NF has many alternatively spliced isoforms having different temporal expression patterns during development. NF participates in axon subcellular targeting and synapse formation, however little is known of the functions of the different isoforms.
Probab=99.51 E-value=9.3e-14 Score=99.59 Aligned_cols=65 Identities=29% Similarity=0.564 Sum_probs=53.6
Q ss_pred EEEEeeeCCCCCCeeEEEeCCEEcc--CCCcEEEc-cCCcEEEccCCC----CCCEEEEEEEEcCCCCceee
Q psy12061 8 VTIFCNPEAAPKPKFVWKKDGNIIG--SGGRRKIF-ENGNLLISPVSR----DDSGIYSCTATNVHGMDESK 72 (626)
Q Consensus 8 ~~l~C~~~g~p~p~i~W~~~~~~i~--~~~~~~~~-~~g~L~i~~v~~----~d~G~Y~C~a~n~~g~~~~~ 72 (626)
+.|.|.+.|+|.|.|.|+|||.++. .+.++.+. .+|+|.|.++.. +|+|.|+|.|.|..|...+.
T Consensus 1 ~~l~C~~~G~P~P~v~W~k~g~~~~~~~~~~~~~~~~~~~L~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~s~ 72 (77)
T cd05875 1 IIIECEAKGNPVPTFQWTRNGKFFNVAKDPRVSMRRRSGTLVIDFSGGGRPEDYEGEYQCFARNNLGTALSN 72 (77)
T ss_pred CEEEEeccccCCCEEEEEECCEEccCcCCCcEEEeCCCceEEEeccCCCCCCCCCEEEEEEEEeccceEEEE
Confidence 4799999999999999999999763 45566653 567899998752 57999999999999986554
No 96
>cd05737 Ig_Myomesin_like_C C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein. Ig_Myomesin_like_C: domain similar to the C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein. Myomesin and M-protein are both structural proteins localized to the M-band, a transverse structure in the center of the sarcomere, and are candidates for M-band bridges. Both proteins are modular, consisting mainly of repetitive Ig-like and fibronectin type III (FnIII) domains. Myomesin is expressed in all types of vertebrate striated muscle; M-protein has a muscle-type specific expression pattern. Myomesin is present in both slow and fast fibers; M-protein is present only in fast fibers. It has been suggested that myomesin acts as a molecular spring with alternative splicing as a means of modifying its elasticity.
Probab=99.51 E-value=1.7e-13 Score=102.80 Aligned_cols=86 Identities=28% Similarity=0.412 Sum_probs=69.7
Q ss_pred eeeCCCceEEecCCcEEEEEEecccCCcceeEEEeeCCEEeccccCCccCCCeeEec---CCeEEEeecCCCCCEeEEEE
Q psy12061 84 YEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINID---GGLLEITNASFADAGEYECV 160 (626)
Q Consensus 84 ~~~~~~~~~v~~g~~~~l~C~~~~~p~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~---~~~l~i~~~~~~d~g~Y~C~ 160 (626)
+...|..+.+.+|++++|.|.+.|.|.|. +.|+|+|.++.... ..++... ...|.|.+++.+|+|.|+|.
T Consensus 4 ~~~lp~~v~v~~G~~v~L~C~v~G~P~p~--v~W~k~g~~l~~~~-----~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~ 76 (92)
T cd05737 4 VGGLPDVVTIMEGKTLNLTCTVFGDPDPE--VSWLKNDQALALSD-----HYNVKVEQGKYASLTIKGVSSEDSGKYGIV 76 (92)
T ss_pred eccCCceEEEeCCCcEEEEEEEEecCCCe--EEEEECCEECccCC-----CEEEEEcCCCEEEEEEccCChhhCEEEEEE
Confidence 44567888999999999999999999875 58999999986542 1122222 23799999999999999999
Q ss_pred EEeCCCceEEEEEEEE
Q psy12061 161 VKSTVGKISTKTTVIV 176 (626)
Q Consensus 161 a~n~~g~~~~~~~l~v 176 (626)
|.|..|..+..+.|.|
T Consensus 77 a~N~~G~~~~~~~v~v 92 (92)
T cd05737 77 VKNKYGGETVDVTVSV 92 (92)
T ss_pred EEECCCcceEEEEEeC
Confidence 9999999888887764
No 97
>cd04977 Ig1_NCAM-1_like First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1 and similar proteins. Ig1_NCAM-1 like: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the s
Probab=99.50 E-value=9.7e-14 Score=103.73 Aligned_cols=74 Identities=26% Similarity=0.488 Sum_probs=59.7
Q ss_pred CCCCceEEEEeeeCCCCCCeeEEEe-CCEEccCCCcEEEccCC----cEEEccCCCCCCEEEEEEEEcCCCC-ceeeEEE
Q psy12061 2 AGEGGNVTIFCNPEAAPKPKFVWKK-DGNIIGSGGRRKIFENG----NLLISPVSRDDSGIYSCTATNVHGM-DESKGRL 75 (626)
Q Consensus 2 ~~~G~~~~l~C~~~g~p~p~i~W~~-~~~~i~~~~~~~~~~~g----~L~i~~v~~~d~G~Y~C~a~n~~g~-~~~~~~l 75 (626)
+.+|+++.|.|.+.|.|+ .+.|++ ++..+....++.+..++ +|+|.+++.+|+|.|+|.|.|..|. ...++.|
T Consensus 12 v~~G~~~~l~C~~~G~p~-~i~W~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~g~~~~~sv~l 90 (92)
T cd04977 12 ISVGESKFFLCQVIGEPK-DISWFSPNGEKLVTQQQISVVQNDDVRSTLTIYNANIEDAGIYKCVATDAKGTESEATVNL 90 (92)
T ss_pred ECCCCeEEEEEEeEeeCC-eEEEECCCCCEeccCCCEEEEeCCCCEEEEEEecCCcccCEEEEEEEEcCCCCcceeEEEE
Confidence 568999999999999974 999998 77777665666655443 6999999999999999999999765 4455555
Q ss_pred E
Q psy12061 76 I 76 (626)
Q Consensus 76 ~ 76 (626)
.
T Consensus 91 ~ 91 (92)
T cd04977 91 K 91 (92)
T ss_pred E
Confidence 4
No 98
>cd05874 Ig6_NrCAM Sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule). Ig6_NrCAM: sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and an intracellular domain. NrCAM is primarily expressed in the nervous system.
Probab=99.50 E-value=1.2e-13 Score=99.09 Aligned_cols=65 Identities=28% Similarity=0.628 Sum_probs=53.0
Q ss_pred EEEEeeeCCCCCCeeEEEeCCEEccC--CCcEEEc-cCCcEEEccCCCC----CCEEEEEEEEcCCCCceee
Q psy12061 8 VTIFCNPEAAPKPKFVWKKDGNIIGS--GGRRKIF-ENGNLLISPVSRD----DSGIYSCTATNVHGMDESK 72 (626)
Q Consensus 8 ~~l~C~~~g~p~p~i~W~~~~~~i~~--~~~~~~~-~~g~L~i~~v~~~----d~G~Y~C~a~n~~g~~~~~ 72 (626)
+.|.|.+.|+|.|+|.|+|||.++.. +.++.+. .+|+|.|..++.+ |+|.|+|.|.|..|...+.
T Consensus 1 ~~l~C~a~G~P~P~i~W~k~g~~l~~~~~~~~~~~~~~g~l~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~s~ 72 (77)
T cd05874 1 IVIQCEAKGKPPPSFSWTRNGTHFDIDKDPKVTMKPNTGTLVINIMNGEKAEAYEGVYQCTARNERGAAVSN 72 (77)
T ss_pred CEEEeeCcccCCCeEEEEECCeECCCcCCCCEEEeCCCceEEEeccccCCCCCCCEEEEEEEEcCCCeEEee
Confidence 57999999999999999999998743 3344443 4688999988753 7899999999999986553
No 99
>cd05894 Ig_C5_MyBP-C C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C). Ig_C5_MyBP_C : the C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C). MyBP_C consists of repeated domains, Ig and fibronectin type 3, and various linkers. Three isoforms of MYBP_C exist and are included in this group: cardiac(c), and fast and slow skeletal muscle (s) MyBP_C. cMYBP_C has insertions between and inside domains and an additional cardiac-specific Ig domain at the N-terminus. For cMYBP_C an interaction has been demonstrated between this C5 domain and the Ig C8 domain.
Probab=99.50 E-value=2.5e-13 Score=99.79 Aligned_cols=79 Identities=22% Similarity=0.294 Sum_probs=66.3
Q ss_pred ceEEecCCcEEEEEEecccCCcceeEEEeeCCEEeccccCCccCCCeeEe----cCCeEEEeecCCCCCEeEEEEEEeCC
Q psy12061 90 KITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINI----DGGLLEITNASFADAGEYECVVKSTV 165 (626)
Q Consensus 90 ~~~v~~g~~~~l~C~~~~~p~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~----~~~~l~i~~~~~~d~g~Y~C~a~n~~ 165 (626)
.+.+..|+++.|.|.+.|.|.|. +.|+|++.++.... .++.. ..+.|.|.++..+|+|.|+|.|.|..
T Consensus 4 ~~~v~~G~~v~l~c~~~G~P~P~--v~W~k~~~~i~~~~------~r~~~~~~~~~~~L~I~~~~~~D~G~Y~c~a~N~~ 75 (86)
T cd05894 4 TIVVVAGNKLRLDVPISGEPAPT--VTWSRGDKAFTETE------GRVRVESYKDLSSFVIEGAEREDEGVYTITVTNPV 75 (86)
T ss_pred EEEEEcCCEEEEEeeEeecCCCe--EEEEECCEECccCC------CeEEEEEcCCeEEEEECCCccCcCEEEEEEEEeCC
Confidence 46789999999999999999885 48999999987532 23333 24689999999999999999999999
Q ss_pred CceEEEEEEEE
Q psy12061 166 GKISTKTTVIV 176 (626)
Q Consensus 166 g~~~~~~~l~v 176 (626)
|..+..+.|.|
T Consensus 76 G~~~~~~~l~V 86 (86)
T cd05894 76 GEDHASLFVKV 86 (86)
T ss_pred CcEEEEEEEEC
Confidence 99988888764
No 100
>cd05733 Ig6_L1-CAM_like Sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins. Ig6_L1-CAM_like: domain similar to the sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains NrCAM [Ng(neuronglia)CAM-related cell adhesion molecule], which is primarily expressed in the nervous system, and human neurofascin.
Probab=99.49 E-value=1.2e-13 Score=99.54 Aligned_cols=64 Identities=30% Similarity=0.620 Sum_probs=53.5
Q ss_pred EEEEeeeCCCCCCeeEEEeCCEEccC--CCcEEEc-cCCcEEEccCCC----CCCEEEEEEEEcCCCCcee
Q psy12061 8 VTIFCNPEAAPKPKFVWKKDGNIIGS--GGRRKIF-ENGNLLISPVSR----DDSGIYSCTATNVHGMDES 71 (626)
Q Consensus 8 ~~l~C~~~g~p~p~i~W~~~~~~i~~--~~~~~~~-~~g~L~i~~v~~----~d~G~Y~C~a~n~~g~~~~ 71 (626)
++|.|.+.|+|.|+|+|+|||.++.. +.++.+. .+|+|.|.+++. +|+|.|+|.|.|..|...+
T Consensus 1 i~l~C~~~G~P~P~v~W~k~g~~l~~~~~~~~~~~~~~g~L~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~s 71 (77)
T cd05733 1 IVIKCEAKGNPPPTFSWTRNGTHFDPEKDPRVTMKPDSGTLVIDNMNGGRAEDYEGEYQCYASNELGTAIS 71 (77)
T ss_pred CEEEeeCcccCCCeEEEEECCeECCCCCCCCEEEeCCCCEEEEeccCCCCCcCCCEEEEEEEEcCCCcEEc
Confidence 57999999999999999999999853 3455543 468899999864 7999999999999998654
No 101
>cd05873 Ig_Sema4D_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4D. Ig_Sema4D_like; Immunoglobulin (Ig)-like domain of Sema4D. Sema4D is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4D has extracellular Sema and Ig domains, a transmembrane domain, and a short cytoplasmic domain. Sema4D plays a part in the development of GABAergic synapses. Sema4D in addition is an immune semaphorin. It is abundant on resting T cells; its expression is weak on resting B cells and antigen presenting cells (APCs), but is upregulated by various stimuli. The receptor used by Sema4D in the immune system is CD72. Sem4D enhances the activation of B cells and DCs through binding CD72, perhaps by reducing CD72s inhibitory signals. The receptor used by Sema4D in the non-lymphatic tissues is plexin-B1. Sem4D is anchored to the cell surface but its extracellular domain can be released from the cell surface by a metalloproteas
Probab=99.49 E-value=1.9e-13 Score=98.83 Aligned_cols=63 Identities=27% Similarity=0.524 Sum_probs=54.4
Q ss_pred CCCCceEEEEeeeCCCCCCeeEEEeCCEEccCC-CcEEEccCCcEEEccCCCCCCEEEEEEEEcCC
Q psy12061 2 AGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSG-GRRKIFENGNLLISPVSRDDSGIYSCTATNVH 66 (626)
Q Consensus 2 ~~~G~~~~l~C~~~g~p~p~i~W~~~~~~i~~~-~~~~~~~~g~L~i~~v~~~d~G~Y~C~a~n~~ 66 (626)
+.+|+++.|.|.+.+ |.|+|.|+|||.+|..+ .|+. +.++.|.|.+++.+|+|.|+|.|.+..
T Consensus 8 v~~G~~v~L~C~~~~-~~~~i~W~~ng~~i~~~~~r~~-~~~~~L~I~nv~~~DsG~Y~C~a~e~~ 71 (87)
T cd05873 8 FKLGNNAELKCSPKS-NLARVVWKFDGKVLTPESAKYL-LYRDGLLIFNASEADAGRYQCLSVEKS 71 (87)
T ss_pred EECCCCEEEEEECCC-CCCeEEEEECCEECCCCCceEE-EECCcEEEeCCCHHHCEEEEEEEEecc
Confidence 578999999999865 67899999999999866 4544 467789999999999999999998763
No 102
>cd05867 Ig4_L1-CAM_like Fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). Ig4_L1-CAM_like: fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.
Probab=99.49 E-value=3.3e-13 Score=97.13 Aligned_cols=75 Identities=23% Similarity=0.436 Sum_probs=64.2
Q ss_pred CCcEEEEEEecccCCcceeEEEeeCCEEeccccCCccCCCeeEecCCeEEEeecCCCCCEeEEEEEEeCCCceEEEEEEE
Q psy12061 96 HRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEITNASFADAGEYECVVKSTVGKISTKTTVI 175 (626)
Q Consensus 96 g~~~~l~C~~~~~p~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~a~n~~g~~~~~~~l~ 175 (626)
|++++|.|.+.|.|.| +++|+|+|.++.... ...+.....+.|.|.+++.+|+|.|+|.|.|..|.....+.|.
T Consensus 1 G~~v~l~C~~~G~P~p--~i~W~k~g~~i~~~~----~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~ 74 (76)
T cd05867 1 GETARLDCQVEGIPTP--NITWSINGAPIEGTD----PDPRRHVSSGALILTDVQPSDTAVYQCEARNRHGNLLANAHVH 74 (76)
T ss_pred CCeEEEEEEeeEeCCC--eEEEEECCEECCCCC----CCceEEeeCCEEEECCCChhhCEEEEEEEECCCCeEEEEEEEE
Confidence 7899999999999987 459999999886532 1235566778999999999999999999999999999998887
Q ss_pred E
Q psy12061 176 V 176 (626)
Q Consensus 176 v 176 (626)
|
T Consensus 75 V 75 (76)
T cd05867 75 V 75 (76)
T ss_pred E
Confidence 6
No 103
>cd05892 Ig_Myotilin_C C-terminal immunoglobulin (Ig)-like domain of myotilin. Ig_Myotilin_C: C-terminal immunoglobulin (Ig)-like domain of myotilin. Mytolin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to the latter family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Myotilin is most abundant in skeletal and cardiac muscle, and is involved in maintaining sarcomere integrity. It binds to alpha-actinin, filamin and actin. Mutations in myotilin lead to muscle disorders.
Probab=99.48 E-value=1.9e-13 Score=96.85 Aligned_cols=70 Identities=23% Similarity=0.367 Sum_probs=57.8
Q ss_pred EEEEEEecccCCcceeEEEeeCCEEeccccCCccCCCeeEe--c-CC--eEEEeecCCCCCEeEEEEEEeCCCceEEEEE
Q psy12061 99 LQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINI--D-GG--LLEITNASFADAGEYECVVKSTVGKISTKTT 173 (626)
Q Consensus 99 ~~l~C~~~~~p~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~--~-~~--~l~i~~~~~~d~g~Y~C~a~n~~g~~~~~~~ 173 (626)
++|.|.+.|.|.|.+ .|+|++..+.... .++.+ . .+ .|.|.+++.+|+|.|+|.|.|..|..+..+.
T Consensus 1 v~l~C~v~G~P~P~i--~W~k~~~~i~~~~------~r~~~~~~~~g~~~L~I~~~~~~D~G~Y~C~A~N~~G~~~~~a~ 72 (75)
T cd05892 1 VKLECQISAIPPPKI--FWKRNNEMVQYNT------DRISLYQDNSGRVTLLIKNVNKKDAGWYTVSAVNEAGVATCHAR 72 (75)
T ss_pred CEEEEEEEecCCCeE--EEEECCEECcCCC------CeEEEEEcCCCcEEEEECCCChhhCEEEEEEEEcCcCeEEEEEE
Confidence 579999999999854 8999999986432 34332 2 22 7999999999999999999999999999998
Q ss_pred EEE
Q psy12061 174 VIV 176 (626)
Q Consensus 174 l~v 176 (626)
|.|
T Consensus 73 L~V 75 (75)
T cd05892 73 LDV 75 (75)
T ss_pred EeC
Confidence 875
No 104
>cd04972 Ig_TrkABC_d4 Fourth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC. TrkABC_d4: the fourth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor fo
Probab=99.48 E-value=3e-13 Score=101.07 Aligned_cols=87 Identities=18% Similarity=0.281 Sum_probs=69.2
Q ss_pred eeCCCceEEecCCcEEEEEEecccCCcceeEEEeeCCEEeccccCCccCCCeeEecCCeEEEeecCCCCCEeEEEEEEeC
Q psy12061 85 EQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEITNASFADAGEYECVVKST 164 (626)
Q Consensus 85 ~~~~~~~~v~~g~~~~l~C~~~~~p~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~a~n~ 164 (626)
..+|++..+.+|+++.|.|.+.|.|.|. +.|+++|..+...... ..........|.|.++...|.|.|+|.|.|.
T Consensus 4 v~~p~~~~v~~G~~v~l~C~~~G~P~p~--v~W~~~g~~~~~~~~~---~~~~~~~~~~L~I~~v~~~D~g~Y~C~A~N~ 78 (90)
T cd04972 4 VDGPNATVVYEGGTATIRCTAEGSPLPK--VEWIIAGLIVIQTRTD---TLETTVDIYNLQLSNITSETQTTVTCTAENP 78 (90)
T ss_pred ccCCcCEEEcCCCcEEEEEEEEEcCCCe--EEEEECCEEccCCccE---EEEecCCEEEEEEecCCcccCEEEEEEEECC
Confidence 3467788899999999999999999875 5899999987643210 0011123458999999999999999999999
Q ss_pred CCceEEEEEEEE
Q psy12061 165 VGKISTKTTVIV 176 (626)
Q Consensus 165 ~g~~~~~~~l~v 176 (626)
.|..+..+.|.|
T Consensus 79 ~G~~~~~~~L~v 90 (90)
T cd04972 79 VGQANVSVQVTV 90 (90)
T ss_pred CCceeEEEEEeC
Confidence 999999888764
No 105
>cd05747 Ig5_Titin_like M5, fifth immunoglobulin (Ig)-like domain of human titin C terminus and similar proteins. Ig5_Titin_like: domain similar to the M5, fifth immunoglobulin (Ig)-like domain from the human titin C terminus. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic; depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone, and appears to function similar to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching.
Probab=99.47 E-value=4.9e-13 Score=100.42 Aligned_cols=85 Identities=21% Similarity=0.379 Sum_probs=69.7
Q ss_pred CCceeeeCCCceEEecCCcEEEEEEecccCCcceeEEEeeCCEEeccccCCccCCCeeEe----cCCeEEEeecCCCCCE
Q psy12061 80 GPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINI----DGGLLEITNASFADAG 155 (626)
Q Consensus 80 ~p~~~~~~~~~~~v~~g~~~~l~C~~~~~p~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~----~~~~l~i~~~~~~d~g 155 (626)
+|.++ ..|.+..+.+|+++.|.|.+.+.|.|. +.|+|+|..+... .+..+ ..+.|.|.+++.+|+|
T Consensus 3 ~~~~~-~~p~~~~~~~G~~~~L~C~~~g~P~p~--v~W~k~g~~l~~~-------~~~~~~~~~~~~~L~i~~~~~~D~G 72 (92)
T cd05747 3 PATIL-TKPRSLTVSEGESARFSCDVDGEPAPT--VTWMREGQIIVSS-------QRHQITSTEYKSTFEISKVQMSDEG 72 (92)
T ss_pred CCccc-ccCccEEEeCCCcEEEEEEEeecCCCE--EEEEECCEECCCC-------CcEEEEEcCCeeEEEECCCCcccCE
Confidence 45555 457899999999999999999999875 5899999887643 22222 2468999999999999
Q ss_pred eEEEEEEeCCCceEEEEEE
Q psy12061 156 EYECVVKSTVGKISTKTTV 174 (626)
Q Consensus 156 ~Y~C~a~n~~g~~~~~~~l 174 (626)
.|+|.|.|..|..+..+.|
T Consensus 73 ~Y~C~a~N~~G~~~~~~~l 91 (92)
T cd05747 73 NYTVVVENSEGKQEAQFTL 91 (92)
T ss_pred eEEEEEEcCCCCEeEEEEe
Confidence 9999999999998887766
No 106
>cd05863 Ig2_VEGFR-3 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3). Ig2_VEGFR-3: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-3 (Flt-4) binds two members of the VEGF family (VEGF-C and -D) and is involved in tumor angiogenesis and growth.
Probab=99.46 E-value=3.3e-13 Score=92.54 Aligned_cols=66 Identities=17% Similarity=0.283 Sum_probs=56.5
Q ss_pred EEEEEEecccCCcceeEEEeeCCEEeccccCCccCCCeeEecCCeEEEeecCCCCCEeEEEEEEeCCCceEEEEEEEEe
Q psy12061 99 LQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEITNASFADAGEYECVVKSTVGKISTKTTVIVE 177 (626)
Q Consensus 99 ~~l~C~~~~~p~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~a~n~~g~~~~~~~l~v~ 177 (626)
++|.|.+.|.|.|. +.|+|||.++... ...+.|.|.++..+|+|.|+|.|.|..|..+.+..+.+.
T Consensus 1 ~~l~c~v~g~P~P~--v~W~kdg~~l~~~-----------~~~~~L~i~~v~~~D~G~YtC~a~N~~g~~~~~~~~~l~ 66 (67)
T cd05863 1 VKLPVKVAAYPPPE--FQWYKDGKLISGK-----------HSQHSLQIKDVTEASAGTYTLVLWNSAAGLEKRISLELI 66 (67)
T ss_pred CEEEEEEEEeCCCE--EEEEECCEECccc-----------CCcCEEEECCCCHHHCEEEEEEEEECCccEEEEEEEEEE
Confidence 47999999999985 5899999999632 145699999999999999999999999988888777663
No 107
>cd05773 Ig8_hNephrin_like Eighth immunoglobulin-like domain of nephrin. Ig8_hNephrin_like: domain similar to the eighth immunoglobulin-like domain in human nephrin. Nephrin is an integral component of the slit diaphragm, and is a central component of the glomerular ultrafilter. Nephrin plays a structural role, and has a role in signaling. Nephrin is a transmembrane protein having a short intracellular portion, and an extracellular portion comprised of eight Ig-like domains, and one fibronectin type III-like domain. The extracellular portions of nephrin, from neighboring foot processes of separate podocyte cells, may interact with each other, and in association with other components of the slit diaphragm, form a porous molecular sieve within the slit pore. The intracellular portion of nephrin is associated with linker proteins, which connect nephrin to the actin cytoskeleton. The intracellular portion is tyrosine phosphorylated, and mediates signaling from the slit diaphragm into the p
Probab=99.46 E-value=7.1e-13 Score=102.38 Aligned_cols=95 Identities=19% Similarity=0.383 Sum_probs=71.1
Q ss_pred eCCceeeeCCCceEEe---cCCcEEEEEEecccCCcceeEEEeeCCEEeccccCCccCCCeeE--------ecCCeEEEe
Q psy12061 79 HGPSYYEQLPPKITIA---AHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNIN--------IDGGLLEIT 147 (626)
Q Consensus 79 ~~p~~~~~~~~~~~v~---~g~~~~l~C~~~~~p~p~~~i~W~~~~~~~~~~~~~~~~~~~~~--------~~~~~l~i~ 147 (626)
.+|.+...+.-...+. .|.+++|.|.+.|.|.| .+.|+|||..+...+ .++. ...+.|.|.
T Consensus 3 ~~P~~~~~~~~~~~~~~~~~g~~v~L~C~a~G~P~p--~i~W~k~g~~l~~~~------~r~~~~~~~~~~~~~s~L~I~ 74 (109)
T cd05773 3 FAPDLQKGPQLRKVASRGDGSSDANLVCQAQGVPRV--QFRWAKNGVPLDLGN------PRYEETTEHTGTVHTSILTII 74 (109)
T ss_pred cccccccCCceEEEEEecCCCCEEEEEEECcccCCC--EEEEEECCEECCCCC------CeEEEEeeccCccceeEEEEC
Confidence 3555544322223332 45799999999999876 569999999986432 1221 124689999
Q ss_pred ecC-CCCCEeEEEEEEeCCCceEEEEEEEEeCCCC
Q psy12061 148 NAS-FADAGEYECVVKSTVGKISTKTTVIVEGPPG 181 (626)
Q Consensus 148 ~~~-~~d~g~Y~C~a~n~~g~~~~~~~l~v~~~P~ 181 (626)
++. .+|.|.|+|.|.|..|..+..+.|.+..+|.
T Consensus 75 ~v~~~~D~G~Y~C~A~N~~G~~~~~i~L~~~~~p~ 109 (109)
T cd05773 75 NVSAALDYALFTCTAHNSLGEDSLDIQLVSTSRPD 109 (109)
T ss_pred cCCccCCCEEEEEEEEeCCccCcEEEEEEecCCCC
Confidence 997 5899999999999999999999999998874
No 108
>cd04967 Ig1_Contactin First Ig domain of contactin. Ig1_Contactin: First Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 weeks postnata
Probab=99.46 E-value=3.6e-13 Score=100.92 Aligned_cols=67 Identities=34% Similarity=0.678 Sum_probs=56.1
Q ss_pred CCceEEEEeeeCCCCCCeeEEEeCCEEccC--CCcEEEccCCcEEEccCCC-CCCEEEEEEEEcCCCCcee
Q psy12061 4 EGGNVTIFCNPEAAPKPKFVWKKDGNIIGS--GGRRKIFENGNLLISPVSR-DDSGIYSCTATNVHGMDES 71 (626)
Q Consensus 4 ~G~~~~l~C~~~g~p~p~i~W~~~~~~i~~--~~~~~~~~~g~L~i~~v~~-~d~G~Y~C~a~n~~g~~~~ 71 (626)
.|++++|.|.+.|+|.|+|+|+|++..+.. ..++. ..++.|.|.++.. +|+|.|+|.|.|..|...+
T Consensus 18 ~~~~~~l~C~~~g~p~p~i~W~k~~~~l~~~~~~~~~-~~~~~L~i~~~~~~~d~G~Y~C~a~N~~G~~~S 87 (91)
T cd04967 18 DEGKVSLNCRARGSPPPTYRWLMNGTEIDDEPDSRYS-LVGGNLVISNPSKAKDAGRYQCLASNIVGTVLS 87 (91)
T ss_pred CCCEEEEEEeeeEcCCCEEEEEECCEECCCCCCCCEE-EECCEEEEecCCccCCCEEEEEEEEcCCCEEEe
Confidence 457899999999999999999999999843 33443 4567899998874 9999999999999997654
No 109
>cd05893 Ig_Palladin_C C-terminal immunoglobulin (Ig)-like domain of palladin. Ig_Palladin_C: C-terminal immunoglobulin (Ig)-like domain of palladin. Palladin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to this family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Palladin binds to alpha-actinin ezrin, vasodilator-stimulated phosphoprotein VASP, SPIN90 (DIP, mDia interacting protein), and Src. Palladin also binds F-actin directly, via its Ig3 domain. Palladin is expressed as several alternatively spliced isoforms, having various combinations of Ig-like domains, in a cell-type-specific manner. It has been suggested that palladin's different Ig-like domains may be specialized for distinct functions.
Probab=99.46 E-value=2.8e-13 Score=96.18 Aligned_cols=70 Identities=21% Similarity=0.366 Sum_probs=57.8
Q ss_pred EEEEEEecccCCcceeEEEeeCCEEeccccCCccCCCeeEec-C--C--eEEEeecCCCCCEeEEEEEEeCCCceEEEEE
Q psy12061 99 LQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINID-G--G--LLEITNASFADAGEYECVVKSTVGKISTKTT 173 (626)
Q Consensus 99 ~~l~C~~~~~p~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~-~--~--~l~i~~~~~~d~g~Y~C~a~n~~g~~~~~~~ 173 (626)
++|.|.+.|.|.|. +.|+|++..+.... .++... . + .|.|.++..+|+|.|+|.|.|..|..+.++.
T Consensus 1 v~l~C~v~G~P~P~--v~W~k~~~~l~~~~------~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~a~ 72 (75)
T cd05893 1 VRLECRVSGVPHPQ--IFWKKENESLTHNT------DRVSMHQDNCGYICLLIQGATKEDAGWYTVSAKNEAGIVSCTAR 72 (75)
T ss_pred CEEEEEEeEecCCE--EEEEECCEECCCCC------CeEEEEEcCCCEEEEEECCCCHHHCEEEEEEEEcCCCEEEEEEE
Confidence 57999999999985 58999999986432 344432 1 1 6999999999999999999999999999998
Q ss_pred EEE
Q psy12061 174 VIV 176 (626)
Q Consensus 174 l~v 176 (626)
|.|
T Consensus 73 L~V 75 (75)
T cd05893 73 LDV 75 (75)
T ss_pred EeC
Confidence 875
No 110
>cd05750 Ig_Pro_neuregulin Immunoglobulin (Ig)-like domain in neuregulins (NRGs). Ig_Pro_neuregulin: immunoglobulin (Ig)-like domain in neuregulins (NRGs). NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. There are four members of the neuregulin gene family (NRG1, -2, -3, and -4). The NRG-1 protein, binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. The other NRGs proteins bind one or the other or both of these ErbBs. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates processes such as target cell differentiation, and Schwann cell surv
Probab=99.46 E-value=2.2e-13 Score=98.42 Aligned_cols=67 Identities=28% Similarity=0.565 Sum_probs=55.4
Q ss_pred EEEEeeeCC-CCCCeeEEEeCCEEccCCCcEE---Ec---cCCcEEEccCCCCCCEEEEEEEEcCCCCceeeEE
Q psy12061 8 VTIFCNPEA-APKPKFVWKKDGNIIGSGGRRK---IF---ENGNLLISPVSRDDSGIYSCTATNVHGMDESKGR 74 (626)
Q Consensus 8 ~~l~C~~~g-~p~p~i~W~~~~~~i~~~~~~~---~~---~~g~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~ 74 (626)
++|.|.+.| .|.|++.|+|+|.++....+.. +. ..+.|.|.++..+|+|.|+|.|.|..|.....+.
T Consensus 1 ~~l~C~~~g~~P~p~~~W~k~g~~l~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~ 74 (75)
T cd05750 1 LVLKCEATSEYPSLRFKWFKDGKELNRKNKPRNIKIRNKKKNSELQINKAKLADSGEYTCVVENILGNDTVTAN 74 (75)
T ss_pred CEEEEEccCCCCCceEEEEcCCeeccccCCcceEEEEecCceEEEEEccCCcccCeEEEEEEEEcCCceeEEEe
Confidence 479999999 9999999999999997554332 21 1347999999999999999999999998776654
No 111
>cd04973 Ig1_FGFR First immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Ig1_FGFR: The first immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for all FGFs.
Probab=99.46 E-value=5.6e-13 Score=96.49 Aligned_cols=79 Identities=30% Similarity=0.462 Sum_probs=65.8
Q ss_pred CCceEEecCCcEEEEEEecccCCcceeEEEeeCCEEeccccCCccCCCeeEecCCeEEEeecCCCCCEeEEEEEEeCCCc
Q psy12061 88 PPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEITNASFADAGEYECVVKSTVGK 167 (626)
Q Consensus 88 ~~~~~v~~g~~~~l~C~~~~~p~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~a~n~~g~ 167 (626)
|.+..+.+|++++|.|.+.+.+ + .+.|+|||.++... .++.+.++.|.|.+++.+|+|.|+|.|.|..|.
T Consensus 1 ~~~~~~~~G~~v~l~C~~~~~~-~--~v~W~k~g~~l~~~-------~~~~~~~~~L~I~~~~~~DsG~Y~C~a~n~~g~ 70 (79)
T cd04973 1 VESYSAHPGDLLQLRCRLRDDV-Q--SINWTKDGVQLGEN-------NRTRITGEEVQIKDAVPRDSGLYACVTSSPSGS 70 (79)
T ss_pred CCcEEecCCCCEEEEEEecCCC-c--eEEEeeCCcCCCCC-------ceEEEeCCEEEECCCChhhCEEEEEEEeCCCCc
Confidence 4677889999999999999963 3 56999999988653 455566779999999999999999999999998
Q ss_pred eEEEEEEEE
Q psy12061 168 ISTKTTVIV 176 (626)
Q Consensus 168 ~~~~~~l~v 176 (626)
....+.|.|
T Consensus 71 ~~~~~~v~V 79 (79)
T cd04973 71 DTTYFSVNV 79 (79)
T ss_pred ccEEEEEeC
Confidence 777766653
No 112
>cd05865 Ig1_NCAM-1 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. Ig1_NCAM-1: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (trans
Probab=99.45 E-value=8.8e-13 Score=98.68 Aligned_cols=83 Identities=25% Similarity=0.399 Sum_probs=66.2
Q ss_pred CCCceEEecCCcEEEEEEecccCCcceeEEEee-CCEEeccccCCccCCCeeEe-----cCCeEEEeecCCCCCEeEEEE
Q psy12061 87 LPPKITIAAHRNLQLRCSAHTEELLDVAYIWTH-NGVRIGNMDLNELETPNINI-----DGGLLEITNASFADAGEYECV 160 (626)
Q Consensus 87 ~~~~~~v~~g~~~~l~C~~~~~p~p~~~i~W~~-~~~~~~~~~~~~~~~~~~~~-----~~~~l~i~~~~~~d~g~Y~C~ 160 (626)
.|.+..+..|++++|.|.+.|.|.+ +++.|++ |+..+.... .++.. ..+.|.|.+++.+|+|.|+|.
T Consensus 6 ~p~~~~v~~G~~v~l~C~v~G~P~~-p~i~W~~~~g~~l~~~~------~r~~v~~~~~~~~~L~I~~v~~~D~G~YtC~ 78 (96)
T cd05865 6 VPSQGEISVGESKFFLCQVAGEAKD-KDISWFSPNGEKLTPNQ------QRISVVRNDDYSSTLTIYNANIDDAGIYKCV 78 (96)
T ss_pred eCCccEECCCCeEEEEEEEeCCCCC-CEEEEECCCCcCccccC------CeEEEEeCCCCceEEEEeccChhhCEEEEEE
Confidence 4667789999999999999999853 2568998 787665421 23322 136899999999999999999
Q ss_pred EEeCC-CceEEEEEEEE
Q psy12061 161 VKSTV-GKISTKTTVIV 176 (626)
Q Consensus 161 a~n~~-g~~~~~~~l~v 176 (626)
|.|.. |..++++.|.|
T Consensus 79 A~N~~~g~~~~s~~l~v 95 (96)
T cd05865 79 VSNEDEGESEATVNVKI 95 (96)
T ss_pred EEcCCCCcEEEEEEEEE
Confidence 99996 88999998876
No 113
>cd05868 Ig4_NrCAM Fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule). Ig4_ NrCAM: fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six IG-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. NrCAM is primarily expressed in the nervous system.
Probab=99.45 E-value=7.2e-13 Score=95.00 Aligned_cols=75 Identities=21% Similarity=0.342 Sum_probs=62.4
Q ss_pred CCcEEEEEEecccCCcceeEEEeeCCEEeccccCCccCCCeeEecCCeEEEeecCCCCCEeEEEEEEeCCCceEEEEEEE
Q psy12061 96 HRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEITNASFADAGEYECVVKSTVGKISTKTTVI 175 (626)
Q Consensus 96 g~~~~l~C~~~~~p~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~a~n~~g~~~~~~~l~ 175 (626)
|++++|.|.+.|.|.|. |.|+|||.++..... .......++.|.|.+++..|+|.|+|.|.|..|...+++.|.
T Consensus 1 g~~~~l~C~a~G~P~P~--i~W~k~g~~i~~~~~----~~~~~~~~~~l~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~ 74 (76)
T cd05868 1 GEDGTLICRANGNPKPS--ISWLTNGVPIEIAPT----DPSRKVDGDTIIFSKVQERSSAVYQCNASNEYGYLLANAFVN 74 (76)
T ss_pred CCCEEEEEEeeEeCCCe--EEEEECCEEccccCC----CceEEecCCEEEECCCCHhhCEEEEEEEEcCCCEEEEEEEEE
Confidence 78899999999999885 589999999864310 112234567899999999999999999999999999999988
Q ss_pred E
Q psy12061 176 V 176 (626)
Q Consensus 176 v 176 (626)
|
T Consensus 75 v 75 (76)
T cd05868 75 V 75 (76)
T ss_pred e
Confidence 6
No 114
>cd05723 Ig4_Neogenin Fourth immunoglobulin (Ig)-like domain in neogenin and similar proteins. Ig4_Neogenin: fourth immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.
Probab=99.45 E-value=8e-13 Score=93.49 Aligned_cols=70 Identities=19% Similarity=0.433 Sum_probs=58.8
Q ss_pred cEEEEEEecccCCcceeEEEeeCCEEeccccCCccCCCeeE-ecCCeEEEeecCCCCCEeEEEEEEeCCCceEEEEEEEE
Q psy12061 98 NLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNIN-IDGGLLEITNASFADAGEYECVVKSTVGKISTKTTVIV 176 (626)
Q Consensus 98 ~~~l~C~~~~~p~p~~~i~W~~~~~~~~~~~~~~~~~~~~~-~~~~~l~i~~~~~~d~g~Y~C~a~n~~g~~~~~~~l~v 176 (626)
+++|.|.+.|.|.|. +.|+|+|..+.... ++. ...+.|.|.+++.+|+|.|+|.|.|..|..++++.|.|
T Consensus 1 ~v~l~C~~~G~P~p~--v~W~k~g~~~~~~~-------~~~~~~~~~l~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~L~V 71 (71)
T cd05723 1 DVIFECEVTGKPTPT--VKWVKNGDMVIPSD-------YFKIVKEHNLQVLGLVKSDEGFYQCIAENDVGNVQASAQLII 71 (71)
T ss_pred CEEEEEEEEEeCCCE--EEEEECCeECCCCC-------CEEEEecCCEEEEcCCcccCEEEEEEEEcCCCEEEEEEEEEC
Confidence 479999999999885 58999999886532 222 35668999999999999999999999999999988864
No 115
>cd05740 Ig_CEACAM_D4 Fourth immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM). Ig_CEACAM_D4: immunoglobulin (Ig)-like domain 4 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the
Probab=99.45 E-value=9.1e-13 Score=97.82 Aligned_cols=82 Identities=20% Similarity=0.314 Sum_probs=65.7
Q ss_pred eCCCceEEecCCcEEEEEEecccCCcceeEEEeeCCEEeccccCCccCCCeeEecCCeEEEeecCCCCCEeEEEEEEeCC
Q psy12061 86 QLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEITNASFADAGEYECVVKSTV 165 (626)
Q Consensus 86 ~~~~~~~v~~g~~~~l~C~~~~~p~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~a~n~~ 165 (626)
..+.+..+.+|++++|.|.+.+. .| .+.|+|++..+.... ..+...++.|.|.+++.+|+|.|+|.|.|..
T Consensus 8 ~~~~~~~v~~g~~v~l~C~a~g~-~p--~i~W~kng~~l~~~~------~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~ 78 (91)
T cd05740 8 NSVGNQPPEDNQPVTLTCEAEGQ-AT--YIWWVNNGSLLVPPR------LQLSNDNRTLTFNNVTRSDTGHYQCEASNEV 78 (91)
T ss_pred cccCccccccCCcEEEEEEeCCC-CC--EEEEEECCEECCCCC------EEEeCCCCEEEECcCChhhCEEEEEEEEcCC
Confidence 34667899999999999999999 66 458999999876432 1222355789999999999999999999999
Q ss_pred Cce-EEEEEEEE
Q psy12061 166 GKI-STKTTVIV 176 (626)
Q Consensus 166 g~~-~~~~~l~v 176 (626)
|.. +..+.|.|
T Consensus 79 G~~~S~~~~L~V 90 (91)
T cd05740 79 SNMTSDPYILNV 90 (91)
T ss_pred CCEEeeeEEEEe
Confidence 975 44666665
No 116
>cd05771 IgC_Tapasin_R Tapasin-R immunoglobulin-like domain. IgC_Tapasin_R: Immunoglobulin-like domain on Tapasin-R. Tapasin is a V-C1 (variable-constant) immunoglobulin superfamily molecule present in the endoplasmic reticulum (ER), where it links MHC class I molecules to the transporter associated with antigen processing (TAP). Tapasin-R is a tapasin-related protein that contains similar structural motifs to Tapasin, with some marked differences, especially in the V domain, transmembrane and cytoplasmic regions. The majority of Tapasin-R is located within the ER; however, there may be some expression of Tapasin-R at the cell surface. Tapasin-R lacks an obvious ER retention signal.
Probab=99.44 E-value=1.7e-12 Score=106.12 Aligned_cols=119 Identities=17% Similarity=0.211 Sum_probs=83.6
Q ss_pred cEEEccCCCCCCEEEEEEEEcCCCCceeeEEEEEEeCCceeeeCCCceEEecCCcEEEEEEecccCCcceeEEEeeCCEE
Q psy12061 44 NLLISPVSRDDSGIYSCTATNVHGMDESKGRLIVLHGPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVR 123 (626)
Q Consensus 44 ~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~p~~~~~~~~~~~v~~g~~~~l~C~~~~~p~p~~~i~W~~~~~~ 123 (626)
+|.|.+++.+|+|.|.|.+.+..|.....+.|.|..+|.+... +.......|+.++|.|.+.+..++.++|.|+++|..
T Consensus 2 sL~i~~v~~~D~G~Y~C~~~~~~~~~~~~~~l~v~~~P~v~~~-~~~~~~~~~~~~~L~C~a~g~~P~~~~i~W~~~g~~ 80 (139)
T cd05771 2 SLTLPGLTVHDEGTYICSVSTPPHQAQQIIQLSVSEPPRVRLS-LEKLVSMIEEPQTLICHIAGYYPLDVQVEWTREPPG 80 (139)
T ss_pred eEEECCCCHHHCEEEEEEEEccCcceeeEEEEEEecCCceEEe-CCCceeecCCcEEEEEEECCCCCCCeEEEEEECCCC
Confidence 5899999999999999999998888888899999888876443 445555589999999999997655578899999865
Q ss_pred ecc-----ccCCccCCCeeEecC------CeEEEeecCCCCCEeEEEEEEeCC
Q psy12061 124 IGN-----MDLNELETPNINIDG------GLLEITNASFADAGEYECVVKSTV 165 (626)
Q Consensus 124 ~~~-----~~~~~~~~~~~~~~~------~~l~i~~~~~~d~g~Y~C~a~n~~ 165 (626)
... .+... .......+ +.|.|..-...+...|+|.+.+..
T Consensus 81 ~~~~~~~~~~~~~--~~~~~~~dgt~~~~s~L~v~~~~~~~g~~ytC~V~H~~ 131 (139)
T cd05771 81 DSPPPVSLSNVSF--SSHRQHQDGTYSLSSHLTLEPGTEDAGATYTCRVSHVS 131 (139)
T ss_pred CccceeccCCeEe--cceEeCCCCCEEEEEEEEecCCccCCCCEEEEEEEcCC
Confidence 221 11000 00011122 345555444445669999997654
No 117
>cd05730 Ig3_NCAM-1_like Third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). Ig3_NCAM-1_like: domain similar to the third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1,and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the
Probab=99.43 E-value=1.8e-12 Score=98.24 Aligned_cols=83 Identities=20% Similarity=0.342 Sum_probs=68.7
Q ss_pred CCceEEecCCcEEEEEEecccCCcceeEEEeeCCEEeccccCCccCCCeeE--ecCCeEEEeecCCCCCEeEEEEEEeCC
Q psy12061 88 PPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNIN--IDGGLLEITNASFADAGEYECVVKSTV 165 (626)
Q Consensus 88 ~~~~~v~~g~~~~l~C~~~~~p~p~~~i~W~~~~~~~~~~~~~~~~~~~~~--~~~~~l~i~~~~~~d~g~Y~C~a~n~~ 165 (626)
+.+..+..|++++|.|.+.|.|.|. +.|+++|..+.... .+.. ...+.|.|.+++.+|+|.|+|.|.|..
T Consensus 10 ~~~~~~~~G~~v~L~C~~~g~P~p~--v~W~k~g~~~~~~~------~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~ 81 (95)
T cd05730 10 EVNATANLGQSVTLACDADGFPEPT--MTWTKDGEPIESGE------EKYSFNEDGSEMTILDVDKLDEAEYTCIAENKA 81 (95)
T ss_pred ccceEEeCCCCEEEEEeccEeCCCE--EEEEECCEECcCCC------CEEEEeCCCCEEEECCCChhhCEEEEEEEEcCC
Confidence 3456889999999999999998875 58999999886541 2222 245679999999999999999999999
Q ss_pred CceEEEEEEEEeC
Q psy12061 166 GKISTKTTVIVEG 178 (626)
Q Consensus 166 g~~~~~~~l~v~~ 178 (626)
|..+..+.|.|..
T Consensus 82 G~~~~~~~L~V~~ 94 (95)
T cd05730 82 GEQEAEIHLKVFA 94 (95)
T ss_pred CeEEEEEEEEEEe
Confidence 9999999988753
No 118
>cd05742 Ig1_VEGFR_like First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor (R) and similar proteins. Ig1_VEGFR_like: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R) related proteins. The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF-A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF
Probab=99.43 E-value=4.2e-13 Score=98.89 Aligned_cols=73 Identities=22% Similarity=0.418 Sum_probs=59.1
Q ss_pred CceEEEEeeeCCC--CCCeeEEEeCCEEccCCC----cEEEc----cCCcEEEccCCCCCCEEEEEEEEcCCCCceeeEE
Q psy12061 5 GGNVTIFCNPEAA--PKPKFVWKKDGNIIGSGG----RRKIF----ENGNLLISPVSRDDSGIYSCTATNVHGMDESKGR 74 (626)
Q Consensus 5 G~~~~l~C~~~g~--p~p~i~W~~~~~~i~~~~----~~~~~----~~g~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~ 74 (626)
|++++|.|.+.|. |.|.+.|++++..+.... +.... ..++|.|.+++.+|+|.|.|.|.|..|....++.
T Consensus 1 Ge~~~L~C~~~g~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~v~~~DsG~Y~C~a~n~~~~~~~s~~ 80 (84)
T cd05742 1 GETLVLNCTVLTELNEGVDFQWTYPGKKRGRGKSMVTRQSLSEATELSSTLTIPNATLKDSGTYTCAASSGTMDQKESTK 80 (84)
T ss_pred CCeEEEEEEEEeCCCccEEEEEecCCcccCCceEeecccccccceEEEEEEEECCCChhhCEEEEEEEccCCCceEEEEE
Confidence 8999999999999 888999999887654221 11111 1236999999999999999999999999988888
Q ss_pred EEE
Q psy12061 75 LIV 77 (626)
Q Consensus 75 l~v 77 (626)
|.|
T Consensus 81 v~v 83 (84)
T cd05742 81 VNI 83 (84)
T ss_pred EEE
Confidence 876
No 119
>cd05757 Ig2_IL1R_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins. Ig2_IL1R_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three IG-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta. This group also contains ILIR-like 1 (IL1
Probab=99.42 E-value=6e-13 Score=98.42 Aligned_cols=73 Identities=23% Similarity=0.378 Sum_probs=60.1
Q ss_pred CCCCceEEEEeeeCC-----CCCCeeEEEeCCEEccCCCcEEEccCCcEEEccCCCCCCEEEEEEEEcCCCCceeeEEE
Q psy12061 2 AGEGGNVTIFCNPEA-----APKPKFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTATNVHGMDESKGRL 75 (626)
Q Consensus 2 ~~~G~~~~l~C~~~g-----~p~p~i~W~~~~~~i~~~~~~~~~~~g~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l 75 (626)
+.+|++++|.|...+ +|.|.|.|+||+.+|....+... .+++|.|.++..+|+|.|+|.|.|..+.....+..
T Consensus 7 ~~~g~~~~l~Cp~~~~~~~~~~~p~i~Wyk~~~~i~~~~~~~~-~~~~L~I~~v~~~DsG~YtC~~~n~~~~~~~~~t~ 84 (92)
T cd05757 7 LFSTKGGKIVCPDLDDFKNENTLPPVQWYKDCKLLEGDRKRFV-KGSKLLIQNVTEEDAGNYTCKLTFTHNGKQYNVTR 84 (92)
T ss_pred EeeccCCEEECCChHHccCCCCCCcEEEeECCEECCCCccEEe-cCCEEEEeeCChhhCEEEEEEEEecCCCEEEEEEE
Confidence 568999999999744 36789999999999986655443 77889999999999999999999998886554433
No 120
>cd05727 Ig2_Contactin-2-like Second Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins. Ig2_Contactin-2-like: second Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.
Probab=99.42 E-value=3.8e-13 Score=98.60 Aligned_cols=68 Identities=32% Similarity=0.572 Sum_probs=56.7
Q ss_pred CCCCceEEEEeee-CCCCCCeeEEEeCCEEc--cCCCcEEEcc-CCcEEEccCCCCCCEEEEEEEEcCCCCc
Q psy12061 2 AGEGGNVTIFCNP-EAAPKPKFVWKKDGNII--GSGGRRKIFE-NGNLLISPVSRDDSGIYSCTATNVHGMD 69 (626)
Q Consensus 2 ~~~G~~~~l~C~~-~g~p~p~i~W~~~~~~i--~~~~~~~~~~-~g~L~i~~v~~~d~G~Y~C~a~n~~g~~ 69 (626)
|.+|+.+.|.|.. .|.|.|.|.|+|++.++ ..+.|..+.. +|+|.|.+|+.+|+|.|.|.|.|.....
T Consensus 15 v~eG~~~~L~C~pP~g~P~p~~~W~k~~~~~~~~~d~r~~~~~~~G~L~fs~v~~~D~g~Y~C~A~n~~~~~ 86 (96)
T cd05727 15 VKEGWGVVLFCDPPPHYPDLSYRWLLNEFPNFIPEDGRRFVSQTNGNLYIAKVEASDRGNYSCFVSSPSSTK 86 (96)
T ss_pred eeeCCcEEEeeCCCCCCCCCEEEEEECCcccccccCCCeEEeCCCCcEEEeecCHhhCceeEEEEEecccCC
Confidence 5689999999976 77899999999998865 3345555554 7999999999999999999999986543
No 121
>cd05859 Ig4_PDGFR-alpha Fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha. IG4_PDGFR-alpha: The fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha. PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFR alpha binds to all three PDGFs, whereas the PDGFR beta (not included in this group) binds only to PDGF-B. PDGF alpha is organized as an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFR alpha and PDGFR beta are essential for normal development.
Probab=99.42 E-value=2.1e-12 Score=97.72 Aligned_cols=86 Identities=10% Similarity=0.019 Sum_probs=67.6
Q ss_pred ceEEecCCcEEEEEEecccCCcceeEEEeeCCEEeccccCCcc-CCCe--eEecCCeEEEeecCCCCCEeEEEEEEeCCC
Q psy12061 90 KITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNEL-ETPN--INIDGGLLEITNASFADAGEYECVVKSTVG 166 (626)
Q Consensus 90 ~~~v~~g~~~~l~C~~~~~p~p~~~i~W~~~~~~~~~~~~~~~-~~~~--~~~~~~~l~i~~~~~~d~g~Y~C~a~n~~g 166 (626)
...+..|+.++|.|.+.|.|.|. +.|+|||.++........ .... .....+.|.|.++..+|+|.|+|.|.|..|
T Consensus 12 ~~~~~~~~~~~l~~~v~g~P~P~--v~W~kdg~~l~~~~~~~~~~~~~~~~~~~~s~L~I~~v~~~D~G~Ytc~A~N~~g 89 (101)
T cd05859 12 LEFANLHEVKEFVVEVEAYPPPQ--IRWLKDNRTLIENLTEITTSEHNVQETRYVSKLKLIRAKEEDSGLYTALAQNEDA 89 (101)
T ss_pred eEEEecCCcEEEEEEEEEeCCCc--eEEEECCEECcCCcceEEeccccccceeeccEEEEeeCCHHHCEEEEEEEEcCCc
Confidence 57888999999999999999984 589999999875421000 0000 011246899999999999999999999999
Q ss_pred ceEEEEEEEEe
Q psy12061 167 KISTKTTVIVE 177 (626)
Q Consensus 167 ~~~~~~~l~v~ 177 (626)
..+.++.|.|.
T Consensus 90 ~~~~t~~l~V~ 100 (101)
T cd05859 90 VKSYTFALQIQ 100 (101)
T ss_pred eEEEEEEEEEE
Confidence 99999988875
No 122
>cd05739 Ig3_RPTP_IIa_LAR_like Third immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. Ig3_RPTP_IIa_LAR_like: domain similar to the third immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple IG-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains. Included in this group is Drosophila LAR (DLAR).
Probab=99.42 E-value=1.6e-12 Score=90.76 Aligned_cols=68 Identities=24% Similarity=0.462 Sum_probs=56.6
Q ss_pred CCcEEEEEEecccCCcceeEEEeeCCEEeccccCCccCCCeeEecCCeEEEeecCCCCCEeEEEEEEeCCCceEEEEEE
Q psy12061 96 HRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEITNASFADAGEYECVVKSTVGKISTKTTV 174 (626)
Q Consensus 96 g~~~~l~C~~~~~p~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~a~n~~g~~~~~~~l 174 (626)
|++++|.|.+.|.|.|. |.|+|++.++... .+.......|+|.++ .|+|.|+|.|.|..|..+.++.|
T Consensus 1 G~~v~L~C~a~G~P~P~--v~W~k~g~~l~~~-------~~~~~~~~~L~i~~~--~d~G~Y~C~A~N~~G~~~~~a~l 68 (69)
T cd05739 1 GGSVNLTCVAVGAPMPY--VKWMKGGEELTKE-------DEMPVGRNVLELTNI--YESANYTCVAISSLGMIEATAQV 68 (69)
T ss_pred CCeEEEEEEeeecCCCE--EEEEECCEECCCc-------cceecCccEEEEecc--ccCeeEEEEEEeCCCEEEEEEEE
Confidence 78899999999999985 5899999987543 234445668999997 48999999999999998888776
No 123
>cd05849 Ig1_Contactin-1 First Ig domain of contactin-1. Ig1_Contactin-1: First Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may, through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.
Probab=99.41 E-value=2.8e-12 Score=95.67 Aligned_cols=85 Identities=27% Similarity=0.570 Sum_probs=64.4
Q ss_pred CceeeeCCCceEEecC---CcEEEEEEecccCCcceeEEEeeCCEEeccccCCccCCCeeEecCCeEEEeecC-CCCCEe
Q psy12061 81 PSYYEQLPPKITIAAH---RNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEITNAS-FADAGE 156 (626)
Q Consensus 81 p~~~~~~~~~~~v~~g---~~~~l~C~~~~~p~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~-~~d~g~ 156 (626)
|.+.. .|.+..+.++ ..+.|.|.+.|.|.| +|.|+|++..+.... .++...++.|.|.++. .+|+|.
T Consensus 2 P~f~~-~P~~~~~~~~~~~~~v~l~C~a~G~P~P--~i~W~k~~~~i~~~~------~~~~~~~g~L~I~~~~~~~D~G~ 72 (93)
T cd05849 2 PVFEE-QPIDTIYPEESTEGKVSVNCRARANPFP--IYKWRKNNLDIDLTN------DRYSMVGGNLVINNPDKYKDAGR 72 (93)
T ss_pred CEEEE-CCCCEEecCCccCCeEEEeCcCccCCCC--EEEEEECCEEccCCC------CeEEEECCEEEECcCCcCCCCEE
Confidence 44444 4666655544 489999999999987 559999999885322 4555678899999985 689999
Q ss_pred EEEEEEeCCCceEE-EEEE
Q psy12061 157 YECVVKSTVGKIST-KTTV 174 (626)
Q Consensus 157 Y~C~a~n~~g~~~~-~~~l 174 (626)
|+|.|.|..|...+ .+.|
T Consensus 73 Y~C~A~N~~G~~~s~~a~l 91 (93)
T cd05849 73 YVCIVSNIYGKVRSREATL 91 (93)
T ss_pred EEEEEEeCcceEEEccEEE
Confidence 99999999998743 4444
No 124
>cd05870 Ig5_NCAM-2 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM). Ig5_NCAM-2: the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.
Probab=99.41 E-value=2.9e-12 Score=97.46 Aligned_cols=91 Identities=20% Similarity=0.392 Sum_probs=68.0
Q ss_pred CCceeeeCCCceEEecCCcEEEEEEecccCCcceeEEEee--CCEEeccccCCccCCCeeEe----cCCeEEEeecCCCC
Q psy12061 80 GPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTH--NGVRIGNMDLNELETPNINI----DGGLLEITNASFAD 153 (626)
Q Consensus 80 ~p~~~~~~~~~~~v~~g~~~~l~C~~~~~p~p~~~i~W~~--~~~~~~~~~~~~~~~~~~~~----~~~~l~i~~~~~~d 153 (626)
+|.+.. +.+..+.+|++++|.|.+.|.|.|. +.|+| ++..+.... .....++.. ..+.|.|.+++.+|
T Consensus 2 ~p~i~~--~~~~~~~~G~~v~l~C~~~G~P~p~--i~W~k~~~g~~~~~~~--~~~~~r~~v~~~~~~~~L~I~~v~~~D 75 (98)
T cd05870 2 QPHIIQ--LKNETTVENGAATLSCKAEGEPIPE--ITWKRASDGHTFSEGD--KSPDGRIEVKGQHGESSLHIKDVKLSD 75 (98)
T ss_pred CCEEEe--eccEEEcCCCcEEEEEecccCCCCe--EEEEECCCCceeccCC--cCcCceEEEeecCCeeEEEEeeCCcCC
Confidence 344432 5688999999999999999999875 58998 454443211 011134443 23589999999999
Q ss_pred CEeEEEEEEeCCCceEEEEEEEE
Q psy12061 154 AGEYECVVKSTVGKISTKTTVIV 176 (626)
Q Consensus 154 ~g~Y~C~a~n~~g~~~~~~~l~v 176 (626)
+|.|+|.|.|..|..+.++.|.|
T Consensus 76 ~G~Y~C~A~N~~G~~~~~~~l~~ 98 (98)
T cd05870 76 SGRYDCEAASRIGGHQKSMYLDI 98 (98)
T ss_pred CEEEEEEEeccCCcceeEEEEeC
Confidence 99999999999999988888764
No 125
>cd04978 Ig4_L1-NrCAM_like Fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related). Ig4_L1-NrCAM_like: fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related). These proteins belong to the L1 subfamily of cell adhesion molecules (CAMs) and are comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. These molecules are primarily expressed in the nervous system. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.
Probab=99.41 E-value=2e-12 Score=93.59 Aligned_cols=75 Identities=27% Similarity=0.431 Sum_probs=63.6
Q ss_pred CCcEEEEEEecccCCcceeEEEeeCCEEeccccCCccCCCeeEecCCeEEEeecCCCCCEeEEEEEEeCCCceEEEEEEE
Q psy12061 96 HRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEITNASFADAGEYECVVKSTVGKISTKTTVI 175 (626)
Q Consensus 96 g~~~~l~C~~~~~p~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~a~n~~g~~~~~~~l~ 175 (626)
|++++|.|.+.|.|.|. |.|+++|..+..... ..+.....+.|.|.+++.+|+|.|+|.|.|..|...+.+.|.
T Consensus 1 G~~~~l~C~~~g~P~p~--i~W~~~g~~~~~~~~----~~~~~~~~~~L~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~ 74 (76)
T cd04978 1 GETGRLDCEAEGIPQPT--ITWRLNGVPIEELPP----DPRRRVDGGTLILSNVQPNDTAVYQCNASNVHGYLLANAFVH 74 (76)
T ss_pred CCeEEEEEEceeeCCCE--EEEEECCEECCCCCC----cceEEccCCEEEECCCChhhCEEEEEEEEccCCeEEEeEEEE
Confidence 78999999999999885 589999998875421 123445678999999999999999999999999999998887
Q ss_pred E
Q psy12061 176 V 176 (626)
Q Consensus 176 v 176 (626)
|
T Consensus 75 V 75 (76)
T cd04978 75 V 75 (76)
T ss_pred E
Confidence 6
No 126
>cd04969 Ig5_Contactin_like Fifth Ig domain of contactin. Ig5_Contactin_like: Fifth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week
Probab=99.40 E-value=1.8e-12 Score=92.57 Aligned_cols=72 Identities=22% Similarity=0.420 Sum_probs=61.0
Q ss_pred CCcEEEEEEecccCCcceeEEEeeCCEEeccccCCccCCCeeE-ecCCeEEEeecCCCCCEeEEEEEEeCCCceEEEEEE
Q psy12061 96 HRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNIN-IDGGLLEITNASFADAGEYECVVKSTVGKISTKTTV 174 (626)
Q Consensus 96 g~~~~l~C~~~~~p~p~~~i~W~~~~~~~~~~~~~~~~~~~~~-~~~~~l~i~~~~~~d~g~Y~C~a~n~~g~~~~~~~l 174 (626)
|+++.|.|.+.+.|.| ++.|+|++..+... .++. ...+.|.|.+++.+|+|.|+|.|.|..|..+.++.|
T Consensus 1 G~~v~L~C~~~g~P~p--~v~W~k~~~~~~~~-------~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~~l 71 (73)
T cd04969 1 GGDVIIECKPKAAPKP--TISWSKGTELLTNS-------SRICIWPDGSLEILNVTKSDEGKYTCFAENFFGKANSTGSL 71 (73)
T ss_pred CCeEEEEEeeeEcCCC--EEEEEECCEEcccC-------CCEEECCCCeEEEccCChhHCEEEEEEEECCCCceEEEEEE
Confidence 7899999999999887 56999999988643 2333 355789999999999999999999999999999888
Q ss_pred EE
Q psy12061 175 IV 176 (626)
Q Consensus 175 ~v 176 (626)
.|
T Consensus 72 ~V 73 (73)
T cd04969 72 SV 73 (73)
T ss_pred EC
Confidence 65
No 127
>cd05876 Ig3_L1-CAM Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). Ig3_L1-CAM: third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.
Probab=99.40 E-value=1.3e-12 Score=92.48 Aligned_cols=71 Identities=24% Similarity=0.327 Sum_probs=59.0
Q ss_pred EEEEEEecccCCcceeEEEeeCCEEeccccCCccCCCeeEecCCeEEEeecCCCCCEeEEEEEEeCCCceEEEEEEEEe
Q psy12061 99 LQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEITNASFADAGEYECVVKSTVGKISTKTTVIVE 177 (626)
Q Consensus 99 ~~l~C~~~~~p~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~a~n~~g~~~~~~~l~v~ 177 (626)
+.|.|.+.|.|.|. +.|+|++..+.... .......+.|.|.+++.+|+|.|+|.|.|..|..+..+.|.|.
T Consensus 1 ~~L~C~~~G~P~P~--v~W~k~~~~~~~~~------~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~Ve 71 (71)
T cd05876 1 LVLECIAEGLPTPE--VHWDRIDGPLSPNR------TKKLNNNKTLQLDNVLESDDGEYVCTAENSEGSARHHYTVTVE 71 (71)
T ss_pred CEEEEEeeEecCCe--EEEEECCcCCCCCc------eeEEcCCCEEEEcccCHHhCEEEEEEEEcCCCeEEEEEEEEEC
Confidence 47999999999985 58999998775431 2333467899999999999999999999999999999888763
No 128
>cd05744 Ig_Myotilin_C_like Immunoglobulin (Ig)-like domain of myotilin, palladin, and myopalladin. Ig_Myotilin_like_C: immunoglobulin (Ig)-like domain in myotilin, palladin, and myopalladin. Myotilin, palladin, and myopalladin function as scaffolds that regulate actin organization. Myotilin and myopalladin are most abundant in skeletal and cardiac muscle; palladin is ubiquitously expressed in the organs of developing vertebrates and plays a key role in cellular morphogenesis. The three family members each interact with specific molecular partners: all three bind to alpha-actinin; in addition, palladin also binds to vasodilator-stimulated phosphoprotein (VASP) and ezrin, myotilin binds to filamin and actin, and myopalladin also binds to nebulin and cardiac ankyrin repeat protein (CARP).
Probab=99.40 E-value=1.8e-12 Score=92.52 Aligned_cols=70 Identities=24% Similarity=0.333 Sum_probs=57.1
Q ss_pred EEEEEEecccCCcceeEEEeeCCEEeccccCCccCCCeeEe--cC---CeEEEeecCCCCCEeEEEEEEeCCCceEEEEE
Q psy12061 99 LQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINI--DG---GLLEITNASFADAGEYECVVKSTVGKISTKTT 173 (626)
Q Consensus 99 ~~l~C~~~~~p~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~--~~---~~l~i~~~~~~d~g~Y~C~a~n~~g~~~~~~~ 173 (626)
++|.|.+.|.|.|. +.|+|++..+.... .++.+ .. ..|.|.+++.+|+|.|+|.|.|..|..+..+.
T Consensus 1 v~L~C~v~G~P~P~--v~W~k~~~~i~~~~------~r~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~ 72 (75)
T cd05744 1 VRLECRVSAIPPPQ--IFWKKNNEMLTYNT------DRISLYQDNCGRICLLIQNANKEDAGWYTVSAVNEAGVVSCNAR 72 (75)
T ss_pred CEEEEEEeecCCCe--EEEEECCEECCCCC------CcEEEEEcCCCeEEEEECCCCcccCEEEEEEEEcCCCcEEEEEE
Confidence 57999999999985 58999999986431 23332 11 26999999999999999999999999999988
Q ss_pred EEE
Q psy12061 174 VIV 176 (626)
Q Consensus 174 l~v 176 (626)
|.|
T Consensus 73 l~v 75 (75)
T cd05744 73 LDV 75 (75)
T ss_pred EeC
Confidence 864
No 129
>cd04976 Ig2_VEGFR Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR). Ig2_VEGFR: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A. VEGFR-1 may play an inhibitory part in these processes by binding VEGF and interfering with its interaction with VEGFR-2. VEGFR-1 has a signa
Probab=99.39 E-value=2.1e-12 Score=91.06 Aligned_cols=70 Identities=21% Similarity=0.333 Sum_probs=59.4
Q ss_pred EEEEEEecccCCcceeEEEeeCCEEeccccCCccCCCeeEecCCeEEEeecCCCCCEeEEEEEEeCCCceEEEEEEEEe
Q psy12061 99 LQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEITNASFADAGEYECVVKSTVGKISTKTTVIVE 177 (626)
Q Consensus 99 ~~l~C~~~~~p~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~a~n~~g~~~~~~~l~v~ 177 (626)
+.|.|.+.|.|.|. +.|+|||.++... .+.....+.|.|.+++.+|+|.|+|.|.|..|..+....+.+.
T Consensus 1 ~~l~c~v~g~P~p~--v~W~k~g~~l~~~-------~~~~~~~~~L~I~~v~~~D~G~YtC~a~N~~g~~~~~~~~~~~ 70 (71)
T cd04976 1 VRLPVKVKAYPPPE--IQWYKNGKLISEK-------NRTKKSGHSLTIKDVTEEDAGNYTVVLTNKQAKLEKRLTFTLV 70 (71)
T ss_pred CEEEeEEEEeCCCE--EEEEECCEECCCC-------CEEEcCCCEEEECcCCHHHCEEEEEEEEcCCccEEEEEEEEEE
Confidence 47999999999885 5899999998754 3455677899999999999999999999999988777777653
No 130
>PF07679 I-set: Immunoglobulin I-set domain; InterPro: IPR013098 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents I-set domains, which are found in several cell adhesion molecules, including vascular (VCAM), intercellular (ICAM), neural (NCAM) and mucosal addressin (MADCAM) cell adhesion molecules, as well as junction adhesion molecules (JAM). I-set domains are also present in several other diverse protein families, including several tyrosine-protein kinase receptors, the hemolymph protein hemolin, the muscle proteins titin, telokin, and twitchin, the neuronal adhesion molecule axonin-1 [], and the signalling molecule semaphorin 4D that is involved in axonal guidance, immune function and angiogenesis [].; PDB: 3MTR_A 2EDK_A 3DMK_B 1KOA_A 3NCM_A 2NCM_A 2V9Q_A 2CR3_A 3QQN_A 3QR2_A ....
Probab=99.39 E-value=2.9e-12 Score=96.50 Aligned_cols=88 Identities=23% Similarity=0.448 Sum_probs=71.9
Q ss_pred CceeeeCCCceEEecCCcEEEEEEecccCCcceeEEEeeCCEEeccccCCccCCCeeEe--cCCeEEEeecCCCCCEeEE
Q psy12061 81 PSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINI--DGGLLEITNASFADAGEYE 158 (626)
Q Consensus 81 p~~~~~~~~~~~v~~g~~~~l~C~~~~~p~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~--~~~~l~i~~~~~~d~g~Y~ 158 (626)
|.+.. .+.++.+.+|++++|.|.+.+.|.| ++.|+++|..+..... ..+.. ....|.|.++..+|+|.|+
T Consensus 1 P~~~~-~~~~~~v~~G~~~~l~c~~~~~p~~--~v~W~~~~~~l~~~~~-----~~~~~~~~~~~L~I~~v~~~D~G~Y~ 72 (90)
T PF07679_consen 1 PVFTK-KPKDVTVKEGESVTLECEVSGNPPP--TVTWYKNGRPLTSSQR-----YQIESDGGSSSLTIKNVTREDAGTYT 72 (90)
T ss_dssp EEEEE-ESSEEEEETTSEEEEEEEEEESSSS--EEEEEETTEEEESSSS-----EEEEEETTEEEEEESSESGGGSEEEE
T ss_pred CEEEE-ecCCEEEeCCCEEEEEEEEEeCCCC--cccccccccceeeeee-----eeeecccceeEEccCCCChhhCEEEE
Confidence 33444 4689999999999999999999776 5589999999987421 12221 4568999999999999999
Q ss_pred EEEEeCCCceEEEEEEEE
Q psy12061 159 CVVKSTVGKISTKTTVIV 176 (626)
Q Consensus 159 C~a~n~~g~~~~~~~l~v 176 (626)
|.|.|..|..+..+.|.|
T Consensus 73 C~~~n~~g~~~~~~~l~V 90 (90)
T PF07679_consen 73 CVASNSSGEATASVNLTV 90 (90)
T ss_dssp EEEEETTEEEEEEEEEEE
T ss_pred EEEEECCCEEEEEEEEEC
Confidence 999999999999988875
No 131
>cd05869 Ig5_NCAM-1 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). Ig5_NCAM-1: The fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM) and heterophilic (NCAM-non-NCAM) interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (tr
Probab=99.39 E-value=3.9e-12 Score=96.53 Aligned_cols=91 Identities=20% Similarity=0.362 Sum_probs=67.6
Q ss_pred CceeeeCCCceEEecCCcEEEEEEecccCCcceeEEEeeCCEEeccccCCccCCCeeEe----cCCeEEEeecCCCCCEe
Q psy12061 81 PSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINI----DGGLLEITNASFADAGE 156 (626)
Q Consensus 81 p~~~~~~~~~~~v~~g~~~~l~C~~~~~p~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~----~~~~l~i~~~~~~d~g~ 156 (626)
|.+.. ++....+..|++++|.|.+.|.|.|. +.|++++..+...... ...++.. ..+.|.|.+++.+|+|.
T Consensus 3 p~i~~-~~~~~~~~~g~~v~l~C~~~G~P~P~--v~W~~~~~~~~~~~~~--~~~~~~v~~~~~~~~L~I~~v~~~D~G~ 77 (97)
T cd05869 3 PKITY-VENQTAMELEEQITLTCEASGDPIPS--ITWRTSTRNISSEEKT--LDGHIVVRSHARVSSLTLKYIQYTDAGE 77 (97)
T ss_pred ceEEE-ccCceEEEcCCCEEEEEEeeEeCCCE--EEEEECCccccCCccc--cCccEEEEcCccEEEEEEecCccCcCEE
Confidence 44433 35555566789999999999999874 5899998877543211 1123322 22589999999999999
Q ss_pred EEEEEEeCCCceEEEEEEEE
Q psy12061 157 YECVVKSTVGKISTKTTVIV 176 (626)
Q Consensus 157 Y~C~a~n~~g~~~~~~~l~v 176 (626)
|+|.|.|..|..+.++.|.|
T Consensus 78 Y~C~A~N~~G~~~~~~~l~v 97 (97)
T cd05869 78 YLCTASNTIGQDSQSMYLEV 97 (97)
T ss_pred EEEEEecCCCCeeEEEEEEC
Confidence 99999999999999888864
No 132
>cd05754 Ig3_Perlecan_like Third immunoglobulin (Ig)-like domain found in Perlecan and similar proteins. Ig3_Perlecan_like: domain similar to the third immunoglobulin (Ig)-like domain found in Perlecan. Perlecan is a large multi-domain heparin sulfate proteoglycan, important in tissue development and organogenesis. Perlecan can be represented as 5 major portions; its fourth major portion (domain IV) is a tandem repeat of immunoglobulin-like domains (Ig2-Ig15), which can vary in size due to alternative splicing. Perlecan binds many cellular and extracellular ligands. Its domain IV region has many binding sites. Some of these have been mapped at the level of individual Ig-like domains, including a site restricted to the Ig5 domain for heparin/sulfatide, a site restricted to the Ig3 domain for nidogen-1 and nidogen-2, a site restricted to Ig4-5 for fibronectin, and sites restricted to Ig2 and to Ig13-15 for fibulin-2.
Probab=99.39 E-value=1.3e-12 Score=96.53 Aligned_cols=71 Identities=31% Similarity=0.560 Sum_probs=60.2
Q ss_pred CCCCceEEEEeeeCC-CCCCeeEEEeCCEEccCCCcEEEccCCcEEEccCCCCCCEEEEEEEEcCCCCceeeEEE
Q psy12061 2 AGEGGNVTIFCNPEA-APKPKFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTATNVHGMDESKGRL 75 (626)
Q Consensus 2 ~~~G~~~~l~C~~~g-~p~p~i~W~~~~~~i~~~~~~~~~~~g~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l 75 (626)
+.+|++++|.|.+.+ .|.|.|.|+|++..+... ....++.|.|.+++.+|+|.|.|.|.|..|...+.+.|
T Consensus 13 v~~G~~v~L~C~~~~~~~~~~i~W~~~~~~~~~~---~~~~~~~L~I~~v~~~DsG~Y~C~a~n~~g~~~~~~~l 84 (85)
T cd05754 13 VRPGADVSFICRAKSKSPAYTLVWTRVGGGLPSR---AMDFNGILTIRNVQLSDAGTYVCTGSNMLDTDEATATL 84 (85)
T ss_pred EcCCCCEEEEEEcCCCCCCcEEEEEECCCcCCCc---ccccCCEEEECCCCHHHCEEEEEEEeccCCeEeEEEEE
Confidence 578999999999975 688899999998766432 22346789999999999999999999999998888776
No 133
>cd05749 Ig2_Tyro3_like Second immunoglobulin (Ig)-like domain of Axl/Tyro3 receptor tyrosine kinases (RTKs). Ig2_Tyro3_like: the second immunoglobulin (Ig)-like domain in the Axl/Tyro3 family of receptor tyrosine kinases (RTKs). This family includes Axl (also known as Ark, Ufo, and Tyro7), Tyro3 (also known as Sky, Rse, Brt, Dtk, and Tif), and Mer (also known as Nyk, c-Eyk, and Tyro12). Axl/Tyro3 family receptors have an extracellular portion with two Ig-like domains followed by two fibronectin-types III (FNIII) domains, a membrane-spanning single helix, and a cytoplasmic tyrosine kinase domain. Axl, Tyro3 and Mer are widely expressed in adult tissues, though they show higher expression in the brain, in the lymphatic and vascular systems, and in the testis. Axl, Tyro3, and Mer bind the vitamin K dependent protein Gas6 with high affinity, and in doing so activate their tyrosine kinase activity. Axl/Gas6 signaling may play a part in cell adhesion processes, prevention of apoptosis, and c
Probab=99.39 E-value=2.9e-12 Score=92.11 Aligned_cols=73 Identities=15% Similarity=0.370 Sum_probs=59.3
Q ss_pred eCCCceEEecCCcEEEEEEecccCCcceeEEEeeCCEEeccccCCccCCCeeEecCCeEEEeecCCCCCEeEEEEEEeCC
Q psy12061 86 QLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEITNASFADAGEYECVVKSTV 165 (626)
Q Consensus 86 ~~~~~~~v~~g~~~~l~C~~~~~p~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~a~n~~ 165 (626)
..|+++.+.+|+++.|.|.+.|.|.|. +|.|+|||.++... .....+.|.|.++ .|+|.|+|.|.|..
T Consensus 3 ~~P~~~~v~~G~~v~l~C~a~G~P~P~-~I~W~k~g~~l~~~---------~~~~~s~L~i~~~--~d~g~Y~C~A~N~~ 70 (81)
T cd05749 3 VEPEDLSVTANTPFNLTCQAVGPPEPV-EILWWQGGSPLGDP---------PAPSPSVLNVPGL--NETSKFSCEAHNAK 70 (81)
T ss_pred CCCCceEEcCCCCEEEEEEeeeecCCe-EEEEEECCEECCCC---------CCCCCCEEEEccc--cCCeEEEEEEEecc
Confidence 357889999999999999999999882 35899999988641 1124568999887 57899999999999
Q ss_pred CceEE
Q psy12061 166 GKIST 170 (626)
Q Consensus 166 g~~~~ 170 (626)
|...+
T Consensus 71 G~~~s 75 (81)
T cd05749 71 GVTTS 75 (81)
T ss_pred CcEEe
Confidence 97644
No 134
>cd05848 Ig1_Contactin-5 First Ig domain of contactin-5. Ig1_Contactin-5: First Ig domain of the neural cell adhesion molecule contactin-5. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains, anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. In rats, a lack of contactin-5 (NB-2) results in an impairment of the neuronal activity in the auditory system. Contactin-5 is expressed specifically in the postnatal nervous system, peaking at about 3 weeks postnatal. Contactin-5 is highly expressed in the adult human brain in the occipital lobe and in the amygdala; lower levels of expression have been detected in the corpus callosum, caudate nucleus, and spinal cord.
Probab=99.38 E-value=4.8e-12 Score=94.93 Aligned_cols=82 Identities=26% Similarity=0.571 Sum_probs=63.4
Q ss_pred CceeeeCCCceEEe---cCCcEEEEEEecccCCcceeEEEeeCCEEeccccCCccCCCeeEecCCeEEEeecC-CCCCEe
Q psy12061 81 PSYYEQLPPKITIA---AHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEITNAS-FADAGE 156 (626)
Q Consensus 81 p~~~~~~~~~~~v~---~g~~~~l~C~~~~~p~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~-~~d~g~ 156 (626)
|.++.. |.++.+. .|++++|.|.+.|.|.| +|+|+|||..+.... ..++...++.|.|.++. ..|+|.
T Consensus 2 P~f~~~-p~~~~~~~~~~g~~v~l~C~~~G~P~P--~i~W~k~g~~l~~~~-----~~~~~~~~g~L~i~~~~~~~D~G~ 73 (94)
T cd05848 2 PVFVQE-PDDAIFPTDSDEKKVILNCEARGNPVP--TYRWLRNGTEIDTES-----DYRYSLIDGNLIISNPSEVKDSGR 73 (94)
T ss_pred CeeEEC-CCcEEccCCCCCCEEEEEEEeeecCCC--EEEEEECCeECccCC-----CceEEeeCCeEEEccCCccCcCEE
Confidence 455554 5555554 47899999999999988 458999999986432 13555667899999985 699999
Q ss_pred EEEEEEeCCCceEE
Q psy12061 157 YECVVKSTVGKIST 170 (626)
Q Consensus 157 Y~C~a~n~~g~~~~ 170 (626)
|+|.|.|..|...+
T Consensus 74 Y~C~A~N~~G~~~S 87 (94)
T cd05848 74 YQCLATNSIGSILS 87 (94)
T ss_pred EEEEEEcCCCeEEe
Confidence 99999999998743
No 135
>cd07701 Ig1_Necl-3 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Ig1_Necl-3: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-3, Necl-3 (also known as cell adhesion molecule 2 (CADM2), SynCAM2, IGSF4D). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-3 accumulates in central and peripheral nervous system tissue, and has been shown to selectively interact with oligodendrocytes.
Probab=99.38 E-value=1.8e-12 Score=97.15 Aligned_cols=75 Identities=24% Similarity=0.414 Sum_probs=58.5
Q ss_pred CCCCceEEEEeeeCCCCCCeeEEEeC--------CEEccCCCcEEEcc----CCcEEEccCCCCCCEEEEEEEEcCCCCc
Q psy12061 2 AGEGGNVTIFCNPEAAPKPKFVWKKD--------GNIIGSGGRRKIFE----NGNLLISPVSRDDSGIYSCTATNVHGMD 69 (626)
Q Consensus 2 ~~~G~~~~l~C~~~g~p~p~i~W~~~--------~~~i~~~~~~~~~~----~g~L~i~~v~~~d~G~Y~C~a~n~~g~~ 69 (626)
+.+|++++|.|.+.+.|.|.|.|++. +.....++|+.+.. +.+|.|.+++.+|+|.|.|.+.+. ...
T Consensus 9 v~eG~~v~L~C~~~~~p~~~v~W~~~~~~~l~~~~~~~~~~~r~~~~~~~~~~~sL~I~~v~~~DsG~Y~C~~~t~-~~~ 87 (95)
T cd07701 9 VVEGGTANLTCRVDQNDNTSLQWSNPAQQTLYFDDKKALRDNRIELVRASWHELSISISDVSLSDEGQYTCSLFTM-PVK 87 (95)
T ss_pred EecCCcEEEEEEEecCCceEEEEeCCCCeEEEEcCcccccCCCEEEEECCCCcEEEEECcCCcccCEEEEEEeEee-cCc
Confidence 57999999999999999999999863 22233456776642 247999999999999999999985 444
Q ss_pred eeeEEEEE
Q psy12061 70 ESKGRLIV 77 (626)
Q Consensus 70 ~~~~~l~v 77 (626)
...+.|.|
T Consensus 88 ~~~~~l~v 95 (95)
T cd07701 88 TSKAYLTV 95 (95)
T ss_pred cEEEEEEC
Confidence 66777764
No 136
>cd05891 Ig_M-protein_C C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2). Ig_M-protein_C: the C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2). M-protein is a structural protein localized to the M-band, a transverse structure in the center of the sarcomere, and is a candidate for M-band bridges. M-protein is modular consisting mainly of repetitive IG-like and fibronectin type III (FnIII) domains, and has a muscle-type specific expression pattern. M-protein is present in fast fibers.
Probab=99.38 E-value=4.8e-12 Score=94.58 Aligned_cols=84 Identities=26% Similarity=0.407 Sum_probs=67.4
Q ss_pred eCCCceEEecCCcEEEEEEecccCCcceeEEEeeCCEEeccccCCccCCCeeEecC---CeEEEeecCCCCCEeEEEEEE
Q psy12061 86 QLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDG---GLLEITNASFADAGEYECVVK 162 (626)
Q Consensus 86 ~~~~~~~v~~g~~~~l~C~~~~~p~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~---~~l~i~~~~~~d~g~Y~C~a~ 162 (626)
..|..+.+.+|+++.|.|.+.+.|.|. +.|+|++..+..... ....... ..|.|.+++.+|+|.|+|.|.
T Consensus 6 ~~p~~v~v~eG~~v~L~C~v~g~P~p~--i~W~k~~~~~~~~~~-----~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~ 78 (92)
T cd05891 6 GLPDVVTIMEGKTLNLTCTVFGNPDPE--VIWFKNDQDIELSEH-----YSVKLEQGKYASLTIKGVTSEDSGKYSINVK 78 (92)
T ss_pred cCCCcEEEcCCCEEEEEEEEEEeCCCe--EEEEECCEECCCCCC-----EEEEEcCCCEEEEEECCCChhhCEEEEEEEE
Confidence 357788999999999999999998774 599999988764321 1111111 379999999999999999999
Q ss_pred eCCCceEEEEEEEE
Q psy12061 163 STVGKISTKTTVIV 176 (626)
Q Consensus 163 n~~g~~~~~~~l~v 176 (626)
|..|..+..+.|.|
T Consensus 79 N~~G~~~~~~~v~~ 92 (92)
T cd05891 79 NKYGGETVDVTVSV 92 (92)
T ss_pred eCCCceeeEEEEEC
Confidence 99999988888764
No 137
>cd05866 Ig1_NCAM-2 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2. Ig1_NCAM-2: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2 (OCAM/mamFas II, RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.
Probab=99.38 E-value=6.7e-12 Score=92.83 Aligned_cols=80 Identities=21% Similarity=0.374 Sum_probs=63.3
Q ss_pred CCCceEEecCCcEEEEEEecccCCcceeEEEee-CCEEeccccCCccCCCeeEe-cC---CeEEEeecCCCCCEeEEEEE
Q psy12061 87 LPPKITIAAHRNLQLRCSAHTEELLDVAYIWTH-NGVRIGNMDLNELETPNINI-DG---GLLEITNASFADAGEYECVV 161 (626)
Q Consensus 87 ~~~~~~v~~g~~~~l~C~~~~~p~p~~~i~W~~-~~~~~~~~~~~~~~~~~~~~-~~---~~l~i~~~~~~d~g~Y~C~a 161 (626)
+|.+..+..|+++.|.|.+.|.|. .+.|++ ++..+... .++.. .+ ..|.|.++..+|+|.|+|.|
T Consensus 6 ~~~~~~v~~G~~v~l~C~~~G~P~---~v~W~k~~g~~~~~~-------~r~~~~~~g~~~~L~I~~v~~~D~G~Y~C~A 75 (92)
T cd05866 6 SLSKVELSVGESKFFTCTAIGEPE---SIDWYNPQGEKIVSS-------QRVVVQKEGVRSRLTIYNANIEDAGIYRCQA 75 (92)
T ss_pred EecceEEcCCCeEEEEEEEEEeCC---eEEEEeCCCeEecCC-------CCEEEEeCCCeeEEEEecCChHHCEEEEEEE
Confidence 567888999999999999999885 458998 57676543 23333 22 38999999999999999999
Q ss_pred EeCCCce-EEEEEEEE
Q psy12061 162 KSTVGKI-STKTTVIV 176 (626)
Q Consensus 162 ~n~~g~~-~~~~~l~v 176 (626)
.|..|.. .+++.|.+
T Consensus 76 ~N~~G~~~~~~i~l~~ 91 (92)
T cd05866 76 TDAKGQTQEATVVLEI 91 (92)
T ss_pred EcCCCcEEEEEEEEEE
Confidence 9999986 56666654
No 138
>cd05857 Ig2_FGFR Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. Ig2_FGFR: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three IG-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin sulfate proteoglycans.
Probab=99.38 E-value=3.8e-12 Score=94.38 Aligned_cols=82 Identities=21% Similarity=0.319 Sum_probs=64.9
Q ss_pred eEEecCCcEEEEEEecccCCcceeEEEeeCCEEeccccCCccCCCeeEecCCeEEEeecCCCCCEeEEEEEEeCCCceEE
Q psy12061 91 ITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEITNASFADAGEYECVVKSTVGKIST 170 (626)
Q Consensus 91 ~~v~~g~~~~l~C~~~~~p~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~a~n~~g~~~~ 170 (626)
..+.+|+++.|.|.+.|.|.| .+.|+|+|..+...... ...+.......|.|.++..+|+|.|+|.|.|..|..+.
T Consensus 4 ~~v~~G~~~~L~C~~~g~P~p--~i~W~k~g~~l~~~~~~--~~~~~~~~~~~l~i~~~~~~D~G~Y~C~a~N~~G~~~~ 79 (85)
T cd05857 4 HAVPAANTVKFRCPAAGNPTP--TMRWLKNGKEFKQEHRI--GGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINH 79 (85)
T ss_pred EEcCCCCEEEEEEEcCCCCCC--EEEEEECCEECCCCCce--eeeEEeCCceEEEEccCCcccCEEEEEEEEeCCCEEEE
Confidence 457899999999999999876 56999999998754210 00112224557999999999999999999999999999
Q ss_pred EEEEEE
Q psy12061 171 KTTVIV 176 (626)
Q Consensus 171 ~~~l~v 176 (626)
.+.|.|
T Consensus 80 ~~~l~v 85 (85)
T cd05857 80 TYHLDV 85 (85)
T ss_pred EEEEEC
Confidence 888764
No 139
>cd05729 Ig2_FGFR_like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor and similar proteins. Ig2_FGFR_like: domain similar to the second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three Ig-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin
Probab=99.37 E-value=3.9e-12 Score=94.73 Aligned_cols=76 Identities=26% Similarity=0.474 Sum_probs=63.2
Q ss_pred CCCCceEEEEeeeCCCCCCeeEEEeCCEEccCCCcEEEcc----CCcEEEccCCCCCCEEEEEEEEcCCCCceeeEEEEE
Q psy12061 2 AGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFE----NGNLLISPVSRDDSGIYSCTATNVHGMDESKGRLIV 77 (626)
Q Consensus 2 ~~~G~~~~l~C~~~g~p~p~i~W~~~~~~i~~~~~~~~~~----~g~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~v 77 (626)
+.+|++++|.|.+.+.|.|.+.|+|++..+..+.+..... ...|.|.++..+|+|.|.|.|.|..|.....+.|.|
T Consensus 6 ~~~G~~~~l~C~~~~~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~n~~g~~~~~~~l~v 85 (85)
T cd05729 6 VPAGSTVRLKCPASGNPRPTITWLKDGKPFKKEHRIGGYKVRKKKWTLILESVVPSDSGKYTCIVENKYGSINHTYKVDV 85 (85)
T ss_pred ecCCCcEEEEEEcCCCCCCeEEEEECCEECcccCceeEEEccCcEEEEEEeECCcccCEEEEEEEEECCceEEEEEEEeC
Confidence 5689999999999999999999999999987554443322 125999999999999999999999998877777654
No 140
>cd05850 Ig1_Contactin-2 First Ig domain of contactin-2. Ig1_Contactin-2: First Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c
Probab=99.37 E-value=1.1e-11 Score=93.14 Aligned_cols=86 Identities=23% Similarity=0.490 Sum_probs=65.4
Q ss_pred CceeeeCCCceEEecC---CcEEEEEEecccCCcceeEEEeeCCEEeccccCCccCCCeeEecCCeEEEeecC-CCCCEe
Q psy12061 81 PSYYEQLPPKITIAAH---RNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEITNAS-FADAGE 156 (626)
Q Consensus 81 p~~~~~~~~~~~v~~g---~~~~l~C~~~~~p~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~-~~d~g~ 156 (626)
|.+. ..|.+..+.+| ++++|.|.+.|.|.| +|+|++||..+.... ..++...++.|.|.++. ..|+|.
T Consensus 2 P~f~-~~P~~~~~~~~~~g~~v~l~C~a~g~P~p--~i~W~~~g~~l~~~~-----~~~~~~~~g~L~I~~~~~~~D~G~ 73 (94)
T cd05850 2 PVFE-EQPSSLLFPEGSPEEKVTLGCRARASPPA--TYRWKMNGTEIKFAP-----ESRYTLVAGNLVINNPQKARDAGS 73 (94)
T ss_pred CeeE-ECCCCEEecCCCCCCeEEEEeEceeCCCC--EEEEEECCEECccCC-----CceEEEECCeEEEccCCccCcCEE
Confidence 4444 35777766555 689999999999987 569999999986432 14555667899998865 599999
Q ss_pred EEEEEEeCCCceEE-EEEE
Q psy12061 157 YECVVKSTVGKIST-KTTV 174 (626)
Q Consensus 157 Y~C~a~n~~g~~~~-~~~l 174 (626)
|+|.|.|..|...+ .+.|
T Consensus 74 Y~C~A~N~~G~~~s~~a~l 92 (94)
T cd05850 74 YQCLAINRCGTVVSREANL 92 (94)
T ss_pred EEEEEEcCcCcEEEEEEEE
Confidence 99999999998744 4444
No 141
>cd05845 Ig2_L1-CAM_like Second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins. Ig2_L1-CAM_like: domain similar to the second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.
Probab=99.37 E-value=9.1e-13 Score=96.40 Aligned_cols=66 Identities=30% Similarity=0.462 Sum_probs=58.8
Q ss_pred CCCCceEEEEee-eCCCCCCeeEEEeCCEE-ccCCCcEEEccCCcEEEccCCCCCCE-EEEEEEEcCCC
Q psy12061 2 AGEGGNVTIFCN-PEAAPKPKFVWKKDGNI-IGSGGRRKIFENGNLLISPVSRDDSG-IYSCTATNVHG 67 (626)
Q Consensus 2 ~~~G~~~~l~C~-~~g~p~p~i~W~~~~~~-i~~~~~~~~~~~g~L~i~~v~~~d~G-~Y~C~a~n~~g 67 (626)
|.+|+.+.|.|. ..|.|.|.|.|++++.. +..+.|+.+..+|+|.|.+|+.+|+| .|.|.|.|...
T Consensus 15 V~eG~~~~L~C~pP~g~P~P~i~W~~~~~~~i~~~~Ri~~~~~GnL~fs~v~~~D~g~~Y~C~a~~~~~ 83 (95)
T cd05845 15 VEEGDSVVLPCNPPKSAVPLRIYWMNSDLLHITQDERVSMGQNGNLYFANVEEQDSHPDYICHAHFPGL 83 (95)
T ss_pred EecCCCEEEEecCCCCCCCCEEEEECCCCccccccccEEECCCceEEEEEEehhhCCCCeEEEEEcccc
Confidence 678999999997 69999999999987755 55678999988999999999999999 89999998753
No 142
>cd07693 Ig1_Robo First immunoglobulin (Ig)-like domain in Robo (roundabout) receptors and similar proteins. Ig1_Robo: domain similar to the first immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit res
Probab=99.37 E-value=7.3e-12 Score=96.65 Aligned_cols=92 Identities=21% Similarity=0.388 Sum_probs=66.3
Q ss_pred CceeeeCCCceEEecCCcEEEEEEecccCCcceeEEEeeCCEEeccccCCccCCCeeEecCCeEEEee-----cCCCCCE
Q psy12061 81 PSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEITN-----ASFADAG 155 (626)
Q Consensus 81 p~~~~~~~~~~~v~~g~~~~l~C~~~~~p~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~-----~~~~d~g 155 (626)
|.+. ..|.+..+.+|++++|.|.+.|.|.| .+.|+|+|..+...... ....+....++.+.+.. +..+|+|
T Consensus 2 P~i~-~~p~~~~v~~G~~~~l~C~~~g~P~p--~i~W~k~g~~l~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~~~~D~G 77 (100)
T cd07693 2 PRIV-EHPSDLIVSKGDPATLNCKAEGRPTP--TIQWLKNGQPLETDKDD-PRSHRIVLPSGSLFFLRVVHGRKGRSDEG 77 (100)
T ss_pred CeEE-ecCceeEEcCCCeEEEEeeCCcCCCC--EEEEEECCEECccccCC-CCcceEEecCCcEEEEEeeccCCCcCcCE
Confidence 4444 45788999999999999999999987 45899999998752110 01122333444443332 3689999
Q ss_pred eEEEEEEeCCCc-eEEEEEEEE
Q psy12061 156 EYECVVKSTVGK-ISTKTTVIV 176 (626)
Q Consensus 156 ~Y~C~a~n~~g~-~~~~~~l~v 176 (626)
.|+|.|.|..|. .+..+.|.|
T Consensus 78 ~Y~C~a~N~~G~~~s~~~~l~v 99 (100)
T cd07693 78 VYVCVAHNSLGEAVSRNASLEV 99 (100)
T ss_pred EEEEEEEccccceecceEEEEe
Confidence 999999999998 677777765
No 143
>cd05732 Ig5_NCAM-1_like Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM) and similar proteins. Ig5_NCAM-1 like: domain similar to the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM mole
Probab=99.37 E-value=5.6e-12 Score=95.99 Aligned_cols=85 Identities=18% Similarity=0.314 Sum_probs=66.3
Q ss_pred CCceEEecCCcEEEEEEecccCCcceeEEEeeCCEEeccccCCccCCCeeEe----cCCeEEEeecCCCCCEeEEEEEEe
Q psy12061 88 PPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINI----DGGLLEITNASFADAGEYECVVKS 163 (626)
Q Consensus 88 ~~~~~v~~g~~~~l~C~~~~~p~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~----~~~~l~i~~~~~~d~g~Y~C~a~n 163 (626)
+.+..+.+|++++|.|.+.+.|.|. +.|++++..+..... ....++.. ..+.|.|.+++.+|+|.|+|.|.|
T Consensus 8 ~~~~~~~~g~~v~l~C~~~g~p~p~--v~W~~~~~~~~~~~~--~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N 83 (96)
T cd05732 8 LENQTAVELEQITLTCEAEGDPIPE--ITWRRATRNFSEGDK--SLDGRIVVRGHARVSSLTLKDVQLTDAGRYDCEASN 83 (96)
T ss_pred cCceeEecCCcEEEEEEEeEcCCCc--EEEEECCcccCCCCc--cccceEEEeCCccEEEEEECcCCcCcCEEeEEEEEe
Confidence 5578899999999999999998875 589999866543211 01123322 235899999999999999999999
Q ss_pred CCCceEEEEEEEE
Q psy12061 164 TVGKISTKTTVIV 176 (626)
Q Consensus 164 ~~g~~~~~~~l~v 176 (626)
..|..+.++.|.|
T Consensus 84 ~~G~~~~s~~l~v 96 (96)
T cd05732 84 RIGGDQQSMYLEV 96 (96)
T ss_pred CCCCcEEEEEEeC
Confidence 9999988888764
No 144
>cd05752 Ig1_FcgammaR_like Frst immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins. Ig1_FcgammaR_like: domain similar to the first immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.
Probab=99.36 E-value=2e-12 Score=92.44 Aligned_cols=56 Identities=25% Similarity=0.531 Sum_probs=48.3
Q ss_pred CCCCceEEEEeeeCCCCCC-eeEEEeCCEEccCCCcEEEccCCcEEEccCCCCCCEEEEEEEEcC
Q psy12061 2 AGEGGNVTIFCNPEAAPKP-KFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTATNV 65 (626)
Q Consensus 2 ~~~G~~~~l~C~~~g~p~p-~i~W~~~~~~i~~~~~~~~~~~g~L~i~~v~~~d~G~Y~C~a~n~ 65 (626)
+.+|++++|.|.+.|.|.+ .+.|+|||..|.. .+++|.|.++ .+|+|.|+|.|.|.
T Consensus 12 v~~G~~V~L~C~~~~~p~~~~~~W~kng~~l~~-------~~~~l~i~~~-~~dsG~Y~C~a~~~ 68 (78)
T cd05752 12 IFQGEKVTLTCNGFNSPEQNSTQWYHNGKLLET-------TTNSYRIRAA-NNDSGEYRCQTQGS 68 (78)
T ss_pred eeCCCCEEEEEeCCCCCCCccEEEEECCEEeec-------cCCeEEEeec-ccCCEEeEEECCCC
Confidence 4689999999999998864 7999999998732 3457999999 99999999999875
No 145
>cd04979 Ig_Semaphorin_C Immunoglobulin (Ig)-like domain of semaphorin. Ig_Semaphorin_C; Immunoglobulin (Ig)-like domain in semaphorins. Semaphorins are transmembrane protein that have important roles in a variety of tissues. Functionally, semaphorins were initially characterized for their importance in the development of the nervous system and in axonal guidance. Later they have been found to be important for the formation and functioning of the cardiovascular, endocrine, gastrointestinal, hepatic, immune, musculoskeletal, renal, reproductive, and respiratory systems. Semaphorins function through binding to their receptors and transmembrane semaphorins also serves as receptors themselves. Although molecular mechanism of semaphorins is poorly understood, the Ig-like domains may involve in ligand binding or dimerization.
Probab=99.36 E-value=3.5e-12 Score=95.16 Aligned_cols=75 Identities=28% Similarity=0.429 Sum_probs=59.6
Q ss_pred CCCCceEEEEeeeCCCCCCeeEEEeCCEEccCC----CcEEEccCCcEEEccCCCCCCEEEEEEEEcCCC-CceeeEEEE
Q psy12061 2 AGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSG----GRRKIFENGNLLISPVSRDDSGIYSCTATNVHG-MDESKGRLI 76 (626)
Q Consensus 2 ~~~G~~~~l~C~~~g~p~p~i~W~~~~~~i~~~----~~~~~~~~g~L~i~~v~~~d~G~Y~C~a~n~~g-~~~~~~~l~ 76 (626)
+.+|+++.|.|.+.+ |.+.+.|+|++..+... .++... .+.|.|.+++.+|+|.|+|.|.|..+ .......|.
T Consensus 8 v~~g~~v~L~C~~~~-p~~~i~W~k~~~~~~~~~~~~~~~~~~-~~~L~I~~~~~~D~G~Y~C~a~~~~~~~~~~~~~l~ 85 (89)
T cd04979 8 VVEGNSVFLECSPKS-NLASVVWLFQGGPLQRKEEPEERLLVT-EDGLLIRSVSPADAGVYTCQSVEHGFKQTLATYSLN 85 (89)
T ss_pred EECCCcEEEEEeCCC-CCceEEEEECCcccccccCcCceEEEc-CCCEEEccCCHHHCEEEEEEEecCccceeEeEEEEE
Confidence 578999999999987 88899999999887654 344443 45699999999999999999997644 344556666
Q ss_pred EE
Q psy12061 77 VL 78 (626)
Q Consensus 77 v~ 78 (626)
|.
T Consensus 86 V~ 87 (89)
T cd04979 86 VL 87 (89)
T ss_pred Ee
Confidence 64
No 146
>cd05882 Ig1_Necl-1 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). Ig1_Necl-1: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-1, Necl-1 (also known as celll adhesion molecule 3 (CADM3), SynCAM2, IGSF4). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the format
Probab=99.35 E-value=4.1e-12 Score=94.59 Aligned_cols=74 Identities=20% Similarity=0.381 Sum_probs=57.0
Q ss_pred CCCCceEEEEeeeCCCCCCeeEEEeCCEEc--------cCCCcEEEcc----CCcEEEccCCCCCCEEEEEEEEcCCCCc
Q psy12061 2 AGEGGNVTIFCNPEAAPKPKFVWKKDGNII--------GSGGRRKIFE----NGNLLISPVSRDDSGIYSCTATNVHGMD 69 (626)
Q Consensus 2 ~~~G~~~~l~C~~~g~p~p~i~W~~~~~~i--------~~~~~~~~~~----~g~L~i~~v~~~d~G~Y~C~a~n~~g~~ 69 (626)
|.+|++|.|.|.+.|.|.|.|.|+|++..+ ..+.|+.+.. +.+|.|.+|+.+|+|.|+|.+... -..
T Consensus 9 v~~G~tv~L~C~v~g~~~~~v~W~k~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~nV~~~D~G~YtC~~~t~-~~~ 87 (95)
T cd05882 9 VAVGGTVTLKCGVKEHDNSSLQWSNTAQQTLYFGEKRALRDNRIQLVKSTPTELIISISNVQLSDEGEYTCSIFTM-PVR 87 (95)
T ss_pred EecCCcEEEEEEEeCCCCCeEEEeccCccEEEeCCeEEEeCCeEEEEeCCCceEEEEECCCCcccCEEEEEEEEee-ccc
Confidence 578999999999999999999999977543 2345665542 247999999999999999999873 334
Q ss_pred eeeEEEE
Q psy12061 70 ESKGRLI 76 (626)
Q Consensus 70 ~~~~~l~ 76 (626)
.+.+.|.
T Consensus 88 ~~~~~~~ 94 (95)
T cd05882 88 TAKATVT 94 (95)
T ss_pred cEEEEEE
Confidence 4445544
No 147
>cd05746 Ig4_Peroxidasin Fourth immunoglobulin (Ig)-like domain of peroxidasin. Ig4_Peroxidasin: the fourth immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted, and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells, which have undergone programmed cell death, and protection of the organism against non-self.
Probab=99.35 E-value=3.3e-12 Score=89.81 Aligned_cols=67 Identities=31% Similarity=0.631 Sum_probs=56.6
Q ss_pred EEEEEEecccCCcceeEEEeeCCEEeccccCCccCCCeeEe-cCCeEEEeecCCCCCEeEEEEEEeCCCceEEEEEE
Q psy12061 99 LQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINI-DGGLLEITNASFADAGEYECVVKSTVGKISTKTTV 174 (626)
Q Consensus 99 ~~l~C~~~~~p~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~-~~~~l~i~~~~~~d~g~Y~C~a~n~~g~~~~~~~l 174 (626)
+.|.|.+.|.|.|. +.|+|+|..+... .++.+ ..+.|.|.+++.+|+|.|+|.|.|..|..+.++.|
T Consensus 1 v~L~C~~~g~P~p~--i~W~k~g~~~~~~-------~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~L 68 (69)
T cd05746 1 VQIPCSAQGDPEPT--ITWNKDGVQVTES-------GKFHISPEGYLAIRDVGVADQGRYECVARNTIGYASVSMVL 68 (69)
T ss_pred CEeEecceEeCCCE--EEEEECCEECCCC-------CCEEECCCCEEEECcCChhhCEEEEEEEECCCCcEEEEEEe
Confidence 57999999999885 5899999988653 23333 46799999999999999999999999999888776
No 148
>cd05895 Ig_Pro_neuregulin-1 Immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1. Ig_Pro_neuregulin-1: immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1. There are many NRG-1 isoforms which arise from the alternative splicing of mRNA. NRG-1 belongs to the neuregulin gene family, which is comprised of four genes. This group represents NRG-1. NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, and heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. The NRG-1 protein binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates process
Probab=99.35 E-value=4.1e-12 Score=91.57 Aligned_cols=67 Identities=30% Similarity=0.539 Sum_probs=53.3
Q ss_pred EEEEeeeCC-CCCCeeEEEeCCEEccCC----CcEEEcc---CCcEEEccCCCCCCEEEEEEEEcCCCCceeeEE
Q psy12061 8 VTIFCNPEA-APKPKFVWKKDGNIIGSG----GRRKIFE---NGNLLISPVSRDDSGIYSCTATNVHGMDESKGR 74 (626)
Q Consensus 8 ~~l~C~~~g-~p~p~i~W~~~~~~i~~~----~~~~~~~---~g~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~ 74 (626)
+.|.|.+.+ .|.+.+.|+|||.+|... .++.+.. .++|.|.+++.+|+|.|+|.|.|..|....++.
T Consensus 1 ~~L~C~a~~~~p~~~~~W~~~g~~i~~~~~~~~~~~~~~~~~~~~L~I~~~~~~DsG~Y~C~a~N~~g~~~~~~~ 75 (76)
T cd05895 1 LVLRCETVSEYPSLRFKWFKNGKEIGAKNKPDNKIKIRKKKKSSELQISKASLADNGEYKCMVSSKLGNDSVTAN 75 (76)
T ss_pred CEEEEecccCCCCCceEEEECCcccccCCCCCceEEEEeCCcEEEEEECcCCcccCEEEEEEEEeCCCceeEEEe
Confidence 479999875 588899999999998632 2333322 246999999999999999999999998776654
No 149
>cd05752 Ig1_FcgammaR_like Frst immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins. Ig1_FcgammaR_like: domain similar to the first immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.
Probab=99.35 E-value=4.5e-12 Score=90.60 Aligned_cols=74 Identities=24% Similarity=0.413 Sum_probs=58.7
Q ss_pred eeCCCceEEecCCcEEEEEEecccCCcceeEEEeeCCEEeccccCCccCCCeeEecCCeEEEeecCCCCCEeEEEEEEeC
Q psy12061 85 EQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEITNASFADAGEYECVVKST 164 (626)
Q Consensus 85 ~~~~~~~~v~~g~~~~l~C~~~~~p~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~a~n~ 164 (626)
...|+...+.+|++++|.|.+.+.|.+. .+.|+|||..+.. .++.|.|.++ .+|+|.|+|.|.|.
T Consensus 4 ~~~P~~~~v~~G~~V~L~C~~~~~p~~~-~~~W~kng~~l~~-------------~~~~l~i~~~-~~dsG~Y~C~a~~~ 68 (78)
T cd05752 4 SLDPPWTTIFQGEKVTLTCNGFNSPEQN-STQWYHNGKLLET-------------TTNSYRIRAA-NNDSGEYRCQTQGS 68 (78)
T ss_pred EeCCCCeEeeCCCCEEEEEeCCCCCCCc-cEEEEECCEEeec-------------cCCeEEEeec-ccCCEEeEEECCCC
Confidence 3467888999999999999999987643 4699999988732 3568999999 99999999999875
Q ss_pred CCceEEEEEEE
Q psy12061 165 VGKISTKTTVI 175 (626)
Q Consensus 165 ~g~~~~~~~l~ 175 (626)
..+..+.|.
T Consensus 69 --~~S~~v~l~ 77 (78)
T cd05752 69 --SLSDPVHLE 77 (78)
T ss_pred --cCCCCEEEe
Confidence 444444443
No 150
>cd05861 Ig1_PDGFR-alphabeta Frst immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b). Ig1_PDGFR-alphabeta: The first immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b). PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFRalpha binds to all three PDGFs, whereas the PDGFRbeta binds only to PDGF-B. PDGFRs alpha and beta have similar organization: an extracellular component with five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFRalpha and PDGFRbeta are essential for normal development.
Probab=99.35 E-value=6.8e-12 Score=91.81 Aligned_cols=74 Identities=26% Similarity=0.409 Sum_probs=56.3
Q ss_pred CceEEEEeeeCCCCCCeeEEEeCCEEccCCC----cEEEcc---CCcEEEccCCCCCCEEEEEEEEcCCC--CceeeEEE
Q psy12061 5 GGNVTIFCNPEAAPKPKFVWKKDGNIIGSGG----RRKIFE---NGNLLISPVSRDDSGIYSCTATNVHG--MDESKGRL 75 (626)
Q Consensus 5 G~~~~l~C~~~g~p~p~i~W~~~~~~i~~~~----~~~~~~---~g~L~i~~v~~~d~G~Y~C~a~n~~g--~~~~~~~l 75 (626)
|++++|.|.+.|.|.|.+.|++++..+.... +..+.. ..+|.|.+++.+|+|.|.|.|.|..+ ....+..|
T Consensus 1 Ge~~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~~~~~DsG~Y~C~a~n~~~~~~~~~sv~i 80 (84)
T cd05861 1 GETITVNCIVQGNEVVDFSWTYPGKDIGKGIPEVEEVKVPATTLRSTLTFPHATVEDSGTYECAAHESTQDQKAFKKVNI 80 (84)
T ss_pred CCcEEEEEEEECCCccEEEEEECCccCCCCceEEEEEecCCcEEEEEEEECCCCcCCCEEEEEEEEECccCcceeEEEEE
Confidence 8999999999999999999999776432111 111111 23699999999999999999999876 45666677
Q ss_pred EEE
Q psy12061 76 IVL 78 (626)
Q Consensus 76 ~v~ 78 (626)
.|.
T Consensus 81 ~V~ 83 (84)
T cd05861 81 TVH 83 (84)
T ss_pred EEe
Confidence 664
No 151
>cd05724 Ig2_Robo Second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Ig2_Robo: domain similar to the second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antago
Probab=99.35 E-value=1.2e-11 Score=91.98 Aligned_cols=81 Identities=25% Similarity=0.430 Sum_probs=64.7
Q ss_pred CCCceEEecCCcEEEEEEe-cccCCcceeEEEeeCCEEeccccCCccCCCeeE-ecCCeEEEeecCCCCCEeEEEEEEeC
Q psy12061 87 LPPKITIAAHRNLQLRCSA-HTEELLDVAYIWTHNGVRIGNMDLNELETPNIN-IDGGLLEITNASFADAGEYECVVKST 164 (626)
Q Consensus 87 ~~~~~~v~~g~~~~l~C~~-~~~p~p~~~i~W~~~~~~~~~~~~~~~~~~~~~-~~~~~l~i~~~~~~d~g~Y~C~a~n~ 164 (626)
.|.+..+.+|+++.|.|.+ .+.|.| ++.|+|+|..+.... .+.. ..++.|.|.+++.+|+|.|+|.|.|.
T Consensus 2 ~p~~~~~~~G~~v~l~C~~~~g~p~p--~i~W~k~g~~~~~~~------~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~ 73 (86)
T cd05724 2 EPSDTQVAVGEMAVLECSPPRGHPEP--TVSWRKDGQPLNLDN------ERVRIVDDGNLLIAEARKSDEGTYKCVATNM 73 (86)
T ss_pred CCccEEEeCCCCEEEEEECCCCCCCC--EEEEEECCEECCCCC------CCEEEccCCEEEEeECCcccCEEEEEEEEec
Confidence 4678889999999999998 678776 558999999887532 2222 34679999999999999999999999
Q ss_pred CCce-EEEEEEE
Q psy12061 165 VGKI-STKTTVI 175 (626)
Q Consensus 165 ~g~~-~~~~~l~ 175 (626)
.|.. +..+.|.
T Consensus 74 ~G~~~s~~~~l~ 85 (86)
T cd05724 74 VGERESAAARLS 85 (86)
T ss_pred cCceeeeeEEEE
Confidence 9976 4455554
No 152
>cd05864 Ig2_VEGFR-2 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2). Ig2_VEGF-2: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-2 (KDR/Flk-1) is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF-A also interacts with VEGFR-1, which it binds more strongly than VEGFR-2. VEGFR-2 and -1 may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.
Probab=99.35 E-value=5.2e-12 Score=87.95 Aligned_cols=68 Identities=21% Similarity=0.229 Sum_probs=55.8
Q ss_pred EEEEEEecccCCcceeEEEeeCCEEeccccCCccCCCeeEecCCeEEEeecCCCCCEeEEEEEEeCCCceEEEEEEEE
Q psy12061 99 LQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEITNASFADAGEYECVVKSTVGKISTKTTVIV 176 (626)
Q Consensus 99 ~~l~C~~~~~p~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~a~n~~g~~~~~~~l~v 176 (626)
+.|.|.+.|.|.|. +.|+|||.++... .++ ..+..|.|.++..+|+|.|+|.|.|..|..+....+.+
T Consensus 1 ~~~~c~v~G~P~P~--v~W~k~g~~l~~~-------~~~-~~~~~L~I~~v~~~D~G~YtC~a~N~~G~~~~~~t~~l 68 (70)
T cd05864 1 VKIPVKYYGYPPPE--VKWYKNGQLIVLN-------HTF-KRGVHLTIYEVTEKDAGNYTVVLTNPITKEEQRHTFQL 68 (70)
T ss_pred CEEEeEEEEeCCCE--EEEEECCEECCCC-------CEE-ccCCEEEECcCCHHHCEEEEEEEEECCCceeeEEEEEE
Confidence 47999999999985 4899999999653 222 23568999999999999999999999998777666654
No 153
>cd05726 Ig4_Robo Fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Ig4_Robo: domain similar to the fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni
Probab=99.34 E-value=1e-11 Score=92.78 Aligned_cols=83 Identities=23% Similarity=0.340 Sum_probs=64.3
Q ss_pred CCcEEEEEEecccCCcceeEEEeeCCEEecccc-CCccCCCeeEe-cCCeEEEeecCCCCCEeEEEEEEeCCCceEEEEE
Q psy12061 96 HRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMD-LNELETPNINI-DGGLLEITNASFADAGEYECVVKSTVGKISTKTT 173 (626)
Q Consensus 96 g~~~~l~C~~~~~p~p~~~i~W~~~~~~~~~~~-~~~~~~~~~~~-~~~~l~i~~~~~~d~g~Y~C~a~n~~g~~~~~~~ 173 (626)
|++++|.|.+.+.|.|. +.|+|+|..+.... .......++.. .++.|.|.+++.+|+|.|+|.|.|..|.....+.
T Consensus 1 G~~v~L~C~~~g~P~p~--v~W~k~g~~~~~~~~~~~~~~~r~~v~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~ 78 (90)
T cd05726 1 GRTVTFQCEATGNPQPA--IFWQKEGSQNLLFSYQPPQSSSRFSVSQTGDLTITNVQRSDVGYYICQTLNVAGSILTKAY 78 (90)
T ss_pred CCEEEEEEECCccCCCE--EEEEeCCCcceeecccCCCCCCeEEECCCCeEEEeeCChhhCEEEEEEEEcCCCceEEEEE
Confidence 78999999999999875 58999987542110 00011245544 3678999999999999999999999999999999
Q ss_pred EEEeCCC
Q psy12061 174 VIVEGPP 180 (626)
Q Consensus 174 l~v~~~P 180 (626)
|.|.+..
T Consensus 79 l~V~~~~ 85 (90)
T cd05726 79 LEVTDVI 85 (90)
T ss_pred EEEeecc
Confidence 9998644
No 154
>cd05722 Ig1_Neogenin First immunoglobulin (Ig)-like domain in neogenin and similar proteins. Ig1_Neogenin: first immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.
Probab=99.34 E-value=1.3e-11 Score=93.40 Aligned_cols=85 Identities=27% Similarity=0.428 Sum_probs=65.4
Q ss_pred eCCCceEEecCCcEEEEEEecccCCcceeEEEeeCCEEeccccCCccCCCeeEecCCeEEEeec-----CCCCCEeEEEE
Q psy12061 86 QLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEITNA-----SFADAGEYECV 160 (626)
Q Consensus 86 ~~~~~~~v~~g~~~~l~C~~~~~p~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~-----~~~d~g~Y~C~ 160 (626)
..|.+..+.+|+++.|.|.+.+.|.| .+.|+|||..+....- .......++.|.|.++ ...|.|.|+|.
T Consensus 4 ~~P~~~~~~~g~~v~l~C~v~g~P~p--~i~W~k~g~~l~~~~~----~~~~~~~~~~l~i~~v~~~~~~~~D~G~Y~C~ 77 (95)
T cd05722 4 SEPSDIVAVRGGPVVLNCSAEGEPPP--KIEWKKDGVLLNLVSD----ERRQQLPNGSLLITSVVHSKHNKPDEGFYQCV 77 (95)
T ss_pred ECCCCeEEcCCCCEEEeeecccCCCC--EEEEEECCeECccccC----cceEEccCCeEEEeeeeccCCCCCcCEEEEEE
Confidence 35678888999999999999999876 5599999999875320 0122335667888777 58999999999
Q ss_pred EEeC-CCce-EEEEEEEE
Q psy12061 161 VKST-VGKI-STKTTVIV 176 (626)
Q Consensus 161 a~n~-~g~~-~~~~~l~v 176 (626)
|.|. .|.. +..+.|.|
T Consensus 78 a~N~~~G~~~s~~~~l~v 95 (95)
T cd05722 78 AQNDSLGSIVSRTARLTV 95 (95)
T ss_pred EECCccCcEEEeeeEEeC
Confidence 9999 9987 55666653
No 155
>cd05898 Ig5_KIRREL3 Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2). Ig5_KIRREL3: the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1). These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development. Neph1 and 2 may mediate axonal guidance and synapse formation in certain areas of the CNS. In the kidney, they participate in the formation of the slit diaphragm.
Probab=99.34 E-value=6.3e-12 Score=93.20 Aligned_cols=75 Identities=28% Similarity=0.470 Sum_probs=62.7
Q ss_pred CCCCCceEEEEeeeCCCCCC-eeEEEeCCEEccC--CCcEEEccC----C---cEEEccCCCCC-CEEEEEEEEcCCCCc
Q psy12061 1 YAGEGGNVTIFCNPEAAPKP-KFVWKKDGNIIGS--GGRRKIFEN----G---NLLISPVSRDD-SGIYSCTATNVHGMD 69 (626)
Q Consensus 1 ~~~~G~~~~l~C~~~g~p~p-~i~W~~~~~~i~~--~~~~~~~~~----g---~L~i~~v~~~d-~G~Y~C~a~n~~g~~ 69 (626)
++.+|++++|.|.+.+.|+| .|.|..++..|.. +.|+.+... | .|.|.++...| .|.|.|.|.|.+|..
T Consensus 12 ~~~~G~~~~L~C~~~s~P~P~~i~W~w~~~~i~~~~~~r~~I~~~~~~~g~~S~L~I~~~~~~d~~g~Y~C~a~N~~G~d 91 (98)
T cd05898 12 YAVRGERGKVKCFIGSTPPPDRIAWAWKENVLESGTSERYTVERTSTGSGVLSTLTINNIMEADFQTHYNCTAWNSFGSG 91 (98)
T ss_pred EEeCCCcEEEEEEEccCCCCcEEEEEEccccccCCCCCCEEEEEEccCCCcEEEEEECCCccccCCcEEEEEEEeCCccc
Confidence 47899999999999888887 7899998888764 468877542 2 59999998766 799999999999998
Q ss_pred eeeEEE
Q psy12061 70 ESKGRL 75 (626)
Q Consensus 70 ~~~~~l 75 (626)
...+.|
T Consensus 92 ~~~i~L 97 (98)
T cd05898 92 TAIIQL 97 (98)
T ss_pred eEEEEe
Confidence 877665
No 156
>PF00041 fn3: Fibronectin type III domain; InterPro: IPR003961 Fibronectins are multi-domain glycoproteins found in a soluble form in plasma, and in an insoluble form in loose connective tissue and basement membranes []. They contain multiple copies of 3 repeat regions (types I, II and III), which bind to a variety of substances including heparin, collagen, DNA, actin, fibrin and fibronectin receptors on cell surfaces. The wide variety of these substances means that fibronectins are involved in a number of important functions: e.g., wound healing; cell adhesion; blood coagulation; cell differentiation and migration; maintenance of the cellular cytoskeleton; and tumour metastasis []. The role of fibronectin in cell differentiation is demonstrated by the marked reduction in the expression of its gene when neoplastic transformation occurs. Cell attachment has been found to be mediated by the binding of the tetrapeptide RGDS to integrins on the cell surface [], although related sequences can also display cell adhesion activity. Plasma fibronectin occurs as a dimer of 2 different subunits, linked together by 2 disulphide bonds near the C terminus. The difference in the 2 chains occurs in the type III repeat region and is caused by alternative splicing of the mRNA from one gene []. The observation that, in a given protein, an individual repeat of one of the 3 types (e.g., the first FnIII repeat) shows much less similarity to its subsequent tandem repeats within that protein than to its equivalent repeat between fibronectins from other species, has suggested that the repeating structure of fibronectin arose at an early stage of evolution. It also seems to suggest that the structure is subject to high selective pressure []. The fibronectin type III repeat region is an approximately 100 amino acid domain, different tandem repeats of which contain binding sites for DNA, heparin and the cell surface []. The superfamily of sequences believed to contain FnIII repeats represents 45 different families, the majority of which are involved in cell surface binding in some manner, or are receptor protein tyrosine kinases, or cytokine receptors.; GO: 0005515 protein binding; PDB: 1UEM_A 1TDQ_A 1X5I_A 2IC2_B 2IBG_C 2IBB_A 3R8Q_A 2FNB_A 1FNH_A 2EDB_A ....
Probab=99.34 E-value=6.7e-12 Score=93.50 Aligned_cols=84 Identities=33% Similarity=0.603 Sum_probs=69.8
Q ss_pred CCceEEEeeeCCCEEEEEEeecCCCCCCCceeeEEEEEEEeccCCccccceeeecCccceEEecCCCCCceEEEEEEEEe
Q psy12061 496 PPSAVHIKGINPTTVHVTWRYVSPSFEEEPIIGYKVRVWEVDQDMSRANDTIIPVGNTLDADIVDLSPGKRYHMRVLAFS 575 (626)
Q Consensus 496 ~p~~l~~~~~~~~~~~l~W~~~~~~~~~~~i~~Y~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~p~~~Y~~~V~a~~ 575 (626)
+|.++++...+.+++.|+|++ +...++.+.+|.|+|+..+... .............+.+.+|.|++.|.|+|+|.+
T Consensus 2 ~P~~l~v~~~~~~sv~v~W~~--~~~~~~~~~~y~v~~~~~~~~~--~~~~~~~~~~~~~~~i~~L~p~t~Y~~~v~a~~ 77 (85)
T PF00041_consen 2 APENLSVSNISPTSVTVSWKP--PSSGNGPITGYRVEYRSVNSTS--DWQEVTVPGNETSYTITGLQPGTTYEFRVRAVN 77 (85)
T ss_dssp SSEEEEEEEECSSEEEEEEEE--SSSTSSSESEEEEEEEETTSSS--EEEEEEEETTSSEEEEESCCTTSEEEEEEEEEE
T ss_pred cCcCeEEEECCCCEEEEEEEC--CCCCCCCeeEEEEEEEecccce--eeeeeeeeeeeeeeeeccCCCCCEEEEEEEEEe
Confidence 688999999999999999995 4377899999999987766543 133444556667999999999999999999999
Q ss_pred cCCCCCCC
Q psy12061 576 NGGDGRMS 583 (626)
Q Consensus 576 ~~G~g~~s 583 (626)
..|.|++|
T Consensus 78 ~~g~g~~S 85 (85)
T PF00041_consen 78 SDGEGPPS 85 (85)
T ss_dssp TTEEEEEE
T ss_pred CCcCcCCC
Confidence 99988764
No 157
>cd05725 Ig3_Robo Third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Ig3_Robo: domain similar to the third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni
Probab=99.33 E-value=6.6e-12 Score=88.48 Aligned_cols=69 Identities=22% Similarity=0.470 Sum_probs=56.6
Q ss_pred EEEEEEecccCCcceeEEEeeCCEEeccccCCccCCCeeEecCCeEEEeecCCCCCEeEEEEEEeCCCceEEEEEEEE
Q psy12061 99 LQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEITNASFADAGEYECVVKSTVGKISTKTTVIV 176 (626)
Q Consensus 99 ~~l~C~~~~~p~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~a~n~~g~~~~~~~l~v 176 (626)
++|.|.+.|.|.|. +.|+|++..+.... ......+.|.|.+++.+|+|.|+|.|.|..|..+..+.|.|
T Consensus 1 v~l~C~~~g~P~p~--v~W~k~~~~~~~~~-------~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V 69 (69)
T cd05725 1 VEFQCEVGGDPVPT--VLWRKEDGELPKGR-------AEILDDKSLKIRNVTAGDEGSYTCEAENMVGKIEASASLTV 69 (69)
T ss_pred CEEEEECccCCCCE--EEEEECCccCCCCc-------EEEeeCCEEEECcCChhHCEEEEEEEEcCCCcEEEEEEEEC
Confidence 57999999999875 58999987664321 12236678999999999999999999999999998888764
No 158
>cd05871 Ig_Semaphorin_classIII Immunoglobulin (Ig)-like domain of class III semaphorin. Ig_Semaphorin_class III; Immunoglobulin (Ig)-like domain of class III semaphorins. Semaphorins are classified into various classes on the basis of structural features additional to the Sema domain. Class III semaphorins are a vertebrate class having a Sema domain, an Ig domain, a short basic domain, and are secreted. They have been shown to be axonal guidance cues and have a part in the regulation of the cardiovascular, immune and respiratory systems. Sema3A, the prototype member of this class III subfamily, induces growth cone collapse and is an inhibitor of axonal sprouting. In perinatal rat cortex as a chemoattractant, it functions to direct, for pyramidal neurons, the orientated extension of apical dendrites. It may play a role, prior to the development of apical dendrites, in signaling the radial migration of newborn cortical neurons towards the upper layers. Sema3A selectively inhibits vascula
Probab=99.33 E-value=7.1e-12 Score=92.81 Aligned_cols=77 Identities=26% Similarity=0.491 Sum_probs=59.4
Q ss_pred CCCCCceEEEEeeeCCCCCCeeEEEeC--CEE----ccCCCcEEEccCCcEEEccCCCCCCEEEEEEEE-cCCCCceeeE
Q psy12061 1 YAGEGGNVTIFCNPEAAPKPKFVWKKD--GNI----IGSGGRRKIFENGNLLISPVSRDDSGIYSCTAT-NVHGMDESKG 73 (626)
Q Consensus 1 ~~~~G~~~~l~C~~~g~p~p~i~W~~~--~~~----i~~~~~~~~~~~g~L~i~~v~~~d~G~Y~C~a~-n~~g~~~~~~ 73 (626)
++.+|++++|.|.. +.|.|.|.|+|. +.. +....|+.. .++.|.|.+++.+|+|.|+|.|. |..+.....+
T Consensus 7 ~~~eG~~v~L~C~~-~~p~p~v~Wykq~~g~~~~~~~~~~~r~~~-~~~~L~I~~~~~~DsG~Y~C~a~~~~~~~~~~~~ 84 (91)
T cd05871 7 YGVENNSTFLECLP-KSPQASVKWLFQRGGDQRKEEVKTEERLIH-TERGLLLRSLQRSDAGVYTCTAVEHSFSQTLAKY 84 (91)
T ss_pred EEecCCcEEEEEEC-CCCCceEEEEEECCCCCccccccccccEEE-ecCeEEEeeCChhHCEEEEEEEEccCCeEEEEEE
Confidence 46799999999997 589999999983 322 122345544 45679999999999999999998 5767666778
Q ss_pred EEEEEe
Q psy12061 74 RLIVLH 79 (626)
Q Consensus 74 ~l~v~~ 79 (626)
.|.|..
T Consensus 85 ~l~v~~ 90 (91)
T cd05871 85 TLHVIE 90 (91)
T ss_pred EEEEec
Confidence 887753
No 159
>cd05748 Ig_Titin_like Immunoglobulin (Ig)-like domain of titin and similar proteins. Ig_Titin_like: immunoglobulin (Ig)-like domain found in titin-like proteins. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic, depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone. It appears to function similarly to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching. Within the sarcomere, titin is also attached to or is associated with myosin binding protein C (MyBP-C). MyBP-C appears to contribute to the generation of passive tension by titin, and similar to titin has repeated Ig-like and FN-
Probab=99.33 E-value=1.1e-11 Score=88.93 Aligned_cols=70 Identities=23% Similarity=0.359 Sum_probs=58.2
Q ss_pred cEEEEEEecccCCcceeEEEeeCCEEeccccCCccCCCeeEe----cCCeEEEeecCCCCCEeEEEEEEeCCCceEEEEE
Q psy12061 98 NLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINI----DGGLLEITNASFADAGEYECVVKSTVGKISTKTT 173 (626)
Q Consensus 98 ~~~l~C~~~~~p~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~----~~~~l~i~~~~~~d~g~Y~C~a~n~~g~~~~~~~ 173 (626)
++.|.|.+.|.|.|. +.|+|+|..+... .++.+ ..+.|.|.++...|+|.|+|.|.|..|..+.++.
T Consensus 1 ~~~l~c~~~G~P~p~--v~W~k~g~~l~~~-------~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~ 71 (74)
T cd05748 1 SVRLEVPISGRPTPT--VTWSKDGKPLKLS-------GRVQIETTASSTSLVIKNAERSDSGKYTLTLKNPAGEKSATIN 71 (74)
T ss_pred CEEEEeeEeeeCCCe--EEEEECCEEcCCC-------CeEEEEECCCeEEEEECCCCcCcCEEEEEEEECCCccEEEEEE
Confidence 478999999999985 5899999998543 22222 3568999999999999999999999999999888
Q ss_pred EEE
Q psy12061 174 VIV 176 (626)
Q Consensus 174 l~v 176 (626)
|.|
T Consensus 72 l~V 74 (74)
T cd05748 72 VKV 74 (74)
T ss_pred EEC
Confidence 764
No 160
>cd05764 Ig_2 Subgroup of the immunoglobulin (Ig) superfamily. Ig_2: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=99.32 E-value=1.6e-11 Score=88.13 Aligned_cols=73 Identities=23% Similarity=0.490 Sum_probs=58.9
Q ss_pred CCcEEEEEEecccCCcceeEEEee-CCEEeccccCCccCCCeeEecCCeEEEeecCCCCCEeEEEEEEeCCCceEEEEEE
Q psy12061 96 HRNLQLRCSAHTEELLDVAYIWTH-NGVRIGNMDLNELETPNINIDGGLLEITNASFADAGEYECVVKSTVGKISTKTTV 174 (626)
Q Consensus 96 g~~~~l~C~~~~~p~p~~~i~W~~-~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~a~n~~g~~~~~~~l 174 (626)
|+++.|.|.+.+.|.| .+.|++ ++..+.... .......+.|.|.++...|+|.|+|.|.|..|..+..+.|
T Consensus 1 G~~~~l~C~~~g~P~p--~v~W~~~~~~~~~~~~------~~~~~~~~~L~i~~~~~~D~G~Y~C~a~N~~G~~~~~~~l 72 (74)
T cd05764 1 GQRATLRCKARGDPEP--AIHWISPDGKLISNSS------RTLVYDNGTLDILITTVKDTGSFTCIASNAAGEATATVEL 72 (74)
T ss_pred CCeEEEEEEccCcCCC--EEEEEeCCCEEecCCC------eEEEecCCEEEEEECChhhCEEEEEEEECCCCeEEEEEEE
Confidence 7899999999999887 458997 666664321 1223466789999999999999999999999999888887
Q ss_pred EE
Q psy12061 175 IV 176 (626)
Q Consensus 175 ~v 176 (626)
.|
T Consensus 73 ~v 74 (74)
T cd05764 73 HI 74 (74)
T ss_pred EC
Confidence 64
No 161
>cd05758 Ig5_KIRREL3-like Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2) and similar proteins. Ig5_KIRREL3-like: domain similar to the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.
Probab=99.32 E-value=2.1e-11 Score=92.74 Aligned_cols=87 Identities=14% Similarity=0.241 Sum_probs=66.7
Q ss_pred CceeeeCCCceEEecCCcEEEEEEecccCCcceeEEEeeCCEEeccccCCccCCCeeEec--------CCeEEEeecCCC
Q psy12061 81 PSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINID--------GGLLEITNASFA 152 (626)
Q Consensus 81 p~~~~~~~~~~~v~~g~~~~l~C~~~~~p~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~--------~~~l~i~~~~~~ 152 (626)
|+++.. +....+..|++++|.|.+.|.|.|. .+.|++++..+.... ..++.+. .+.|.|.++..+
T Consensus 2 pp~i~~-~~~~~~~~G~~v~L~C~~~g~P~P~-~v~W~~~~~~i~~~~-----~~r~~i~~~~~~~~~~s~L~I~~v~~~ 74 (98)
T cd05758 2 PPIITS-EATQYAILGDKGRVECFIFSTPPPD-RIVWTWKENELESGS-----SGRYTVETDPSPGGVLSTLTISNTQES 74 (98)
T ss_pred CCeEcC-CCcEEEeCCCcEEEEEEEcccCCCC-EeEEEECCEEccCCC-----CCCEEEEEecCCCceEEEEEECCcccc
Confidence 444443 4577789999999999999999884 458999999886532 1233321 147999999995
Q ss_pred C-CEeEEEEEEeCCCceEEEEEE
Q psy12061 153 D-AGEYECVVKSTVGKISTKTTV 174 (626)
Q Consensus 153 d-~g~Y~C~a~n~~g~~~~~~~l 174 (626)
| .|.|+|.|.|..|.....+.|
T Consensus 75 d~~G~Y~C~A~N~~G~~~~~~~L 97 (98)
T cd05758 75 DFQTSYNCTAWNSFGSGTAIISL 97 (98)
T ss_pred ccceeEEEEEEcCCCcccEEEEe
Confidence 5 899999999999998887765
No 162
>cd05756 Ig1_IL1R_like First immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins. Ig1_IL1R_like: domain similar to the first immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.
Probab=99.31 E-value=1e-11 Score=92.65 Aligned_cols=83 Identities=18% Similarity=0.286 Sum_probs=66.2
Q ss_pred CceEEecCCcEEEEEEecc-----cCCcceeEEEeeCCEEeccccCCccCCCeeEecCCeEEEeecCCCCCEeEEEEEEe
Q psy12061 89 PKITIAAHRNLQLRCSAHT-----EELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEITNASFADAGEYECVVKS 163 (626)
Q Consensus 89 ~~~~v~~g~~~~l~C~~~~-----~p~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~a~n 163 (626)
.+..+.+|+.+.|.|.+.+ .|.| .|.|+|++..+.... ....++...++.|.|.+++.+|+|.|+|.+.|
T Consensus 7 ~~~~v~~G~~~~L~C~~~g~~~~~~p~~--~v~Wyk~~~~~~~~~---~~~~r~~~~~~~L~I~~~~~~DsG~Y~C~~~N 81 (94)
T cd05756 7 KKSYVLEGEPVVIKCPLFYSYIAQSPGL--NLTWYKSDGKTPIPT---EERSRMHQQKDLLWFLPAALEDSGLYTCVVRN 81 (94)
T ss_pred eEEEEecCCCeEEECCCCCcccccCCCc--eEEEEEcCCCCcccc---cccceeeecCCeEEEccCCcccCeEEEEEEcC
Confidence 4677889999999999999 5655 569999987653211 11245555678999999999999999999999
Q ss_pred CCCceEEEEEEEE
Q psy12061 164 TVGKISTKTTVIV 176 (626)
Q Consensus 164 ~~g~~~~~~~l~v 176 (626)
..|..+..+.|.|
T Consensus 82 ~~g~~~~~~~L~v 94 (94)
T cd05756 82 STYCMKVSISLTV 94 (94)
T ss_pred CCccEEEEEEEEC
Confidence 9999988888764
No 163
>cd05731 Ig3_L1-CAM_like Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). Ig3_L1-CAM_like: domain similar to the third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM and human neurofascin.
Probab=99.31 E-value=8.5e-12 Score=88.88 Aligned_cols=71 Identities=27% Similarity=0.396 Sum_probs=58.1
Q ss_pred EEEEEEecccCCcceeEEEeeCCEEeccccCCccCCCeeEecCCeEEEeecCCCCCEeEEEEEEeCCCceEEEEEEEEe
Q psy12061 99 LQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEITNASFADAGEYECVVKSTVGKISTKTTVIVE 177 (626)
Q Consensus 99 ~~l~C~~~~~p~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~a~n~~g~~~~~~~l~v~ 177 (626)
+.|.|.+.|.|.|. +.|+|++..+.... .......+.|.|.+++.+|+|.|+|.|.|..|..+..+.|.|.
T Consensus 1 v~l~C~~~g~P~p~--v~W~k~~~~~~~~~------~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V~ 71 (71)
T cd05731 1 LLLECIAEGLPTPE--ISWIKIGGELPADR------TKFENFNKTLKIDNVSEEDDGEYRCTASNSLGSARHTISVTVE 71 (71)
T ss_pred CEEEEEeeEecCCe--EEEEECCeECCCCc------eeEecCCCEEEECCCCHHHCEEEEEEEEeCCceEEEEEEEEEC
Confidence 47999999999885 58999998775432 2223356789999999999999999999999999988888763
No 164
>cd05760 Ig2_PTK7 Second immunoglobulin (Ig)-like domain of protein tyrosine kinase (PTK) 7, also known as CCK4. Ig2_PTK7: domain similar to the second immunoglobulin (Ig)-like domain in protein tyrosine kinase (PTK) 7, also known as CCK4. PTK7 is a subfamily of the receptor protein tyrosine kinase family, and is referred to as an RPTK-like molecule. RPTKs transduce extracellular signals across the cell membrane, and play important roles in regulating cell proliferation, migration, and differentiation. PTK7 is organized as an extracellular portion having seven Ig-like domains, a single transmembrane region, and a cytoplasmic tyrosine kinase-like domain. PTK7 is considered a pseudokinase as it has several unusual residues in some of the highly conserved tyrosine kinase (TK) motifs; it is predicted to lack TK activity. PTK7 may function as a cell-adhesion molecule. PTK7 mRNA is expressed at high levels in placenta, melanocytes, liver, lung, pancreas, and kidney. PTK7 is overexpressed in s
Probab=99.31 E-value=1.6e-11 Score=88.35 Aligned_cols=71 Identities=18% Similarity=0.398 Sum_probs=54.3
Q ss_pred EEEEEEecccCCcceeEEEeeCCEEeccccCCccCCCeeEecCCeEEEeecCCCCCEeEEEEEEeCCCceEEEEEEE
Q psy12061 99 LQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEITNASFADAGEYECVVKSTVGKISTKTTVI 175 (626)
Q Consensus 99 ~~l~C~~~~~p~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~a~n~~g~~~~~~~l~ 175 (626)
++|.|.+.|.|.|. +.|+|+|.++..... ...+....+.|.|.+++.+|+|.|+|.|.|..|....+..+.
T Consensus 1 v~L~C~~~g~P~p~--v~W~k~g~~l~~~~~----~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~s~~~~~ 71 (77)
T cd05760 1 VTLRCHIDGHPRPT--YQWFRDGTPLSDGQG----NYSVSSKERTLTLRSAGPDDSGLYYCCAHNAFGSVCSSQNFT 71 (77)
T ss_pred CEEEEEeeecCCCc--EEEEECCEECCCCCc----cEEEeCCCCEEEEeeCCcccCEEEEEEEEeCCCeEeeCceEE
Confidence 57999999999875 589999998865320 112223456899999999999999999999999875444333
No 165
>cd05738 Ig2_RPTP_IIa_LAR_like Second immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. Ig2_RPTP_IIa_LAR_like: domain similar to the second immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple Ig-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains.
Probab=99.31 E-value=1.2e-11 Score=88.31 Aligned_cols=72 Identities=24% Similarity=0.467 Sum_probs=57.3
Q ss_pred EEEEEEecccCCcceeEEEeeCCEEeccccCCccCCCeeE-ecCCeEEEeecCCCCCEeEEEEEEeCCCce-EEEEEEEE
Q psy12061 99 LQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNIN-IDGGLLEITNASFADAGEYECVVKSTVGKI-STKTTVIV 176 (626)
Q Consensus 99 ~~l~C~~~~~p~p~~~i~W~~~~~~~~~~~~~~~~~~~~~-~~~~~l~i~~~~~~d~g~Y~C~a~n~~g~~-~~~~~l~v 176 (626)
++|.|.+.|.|.|. +.|+|++.++.... ..++. ..++.|.|.+++.+|+|.|+|.|.|..|.. +..+.|.|
T Consensus 1 a~l~C~~~G~P~p~--v~W~k~~~~~~~~~-----~~~~~~~~~g~L~i~~~~~~D~G~Y~C~a~N~~G~~~s~~a~l~v 73 (74)
T cd05738 1 ATMLCAASGNPDPE--ITWFKDFLPVDTTS-----NGRIKQLRSGALQIENSEESDQGKYECVATNSAGTRYSAPANLYV 73 (74)
T ss_pred CEEEEEEeEecCCE--EEEEECCEECccCC-----CCCEEEcCCcEEEECCCChhhCEEEEEEEECCCCceEcccEEEEE
Confidence 47999999999885 48999999876321 13333 356789999999999999999999999985 67777776
Q ss_pred e
Q psy12061 177 E 177 (626)
Q Consensus 177 ~ 177 (626)
+
T Consensus 74 ~ 74 (74)
T cd05738 74 R 74 (74)
T ss_pred C
Confidence 3
No 166
>cd05856 Ig2_FGFRL1-like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1). Ig2_FGFRL1-like: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1). FGFRL1 is comprised of a signal peptide, three extracellular Ig-like modules, a transmembrane segment, and a short intracellular domain. FGFRL1 is expressed preferentially in skeletal tissues. Similar to FGF receptors, the expressed protein interacts specifically with heparin and with FGF2. FGFRL1 does not have a protein tyrosine kinase domain at its C terminus; neither does its cytoplasmic domain appear to interact with a signaling partner. It has been suggested that FGFRL1 may not have any direct signaling function, but instead acts as a decoy receptor trapping FGFs and preventing them from binding other receptors.
Probab=99.30 E-value=1e-11 Score=91.61 Aligned_cols=79 Identities=22% Similarity=0.370 Sum_probs=63.0
Q ss_pred eEEecCCcEEEEEEecccCCcceeEEEeeCCEEeccccCCccCCCeeEecCCeEEEeecCCCCCEeEEEEEEeCCCceEE
Q psy12061 91 ITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEITNASFADAGEYECVVKSTVGKIST 170 (626)
Q Consensus 91 ~~v~~g~~~~l~C~~~~~p~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~a~n~~g~~~~ 170 (626)
+....|++++|.|.+.+.|.|. +.|+|++..+..... .........|.|.+++.+|+|.|+|.|.|..|..+.
T Consensus 4 ~~~~~G~~v~L~C~~~g~p~p~--i~W~k~~~~~~~~~~-----~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~ 76 (82)
T cd05856 4 IARPVGSSVRLKCVASGNPRPD--ITWLKDNKPLTPTEI-----GESRKKKWTLSLKNLKPEDSGKYTCHVSNRAGEINA 76 (82)
T ss_pred eeccCCCeEEEEEEeeEeCCCc--EEEEECCcCCcCCcc-----ceecCceEEEEEccCChhhCEEEEEEEEcCCccEEE
Confidence 4567899999999999998875 589999988764321 111223468999999999999999999999999888
Q ss_pred EEEEEE
Q psy12061 171 KTTVIV 176 (626)
Q Consensus 171 ~~~l~v 176 (626)
.+.|.|
T Consensus 77 ~~~v~v 82 (82)
T cd05856 77 TYKVDV 82 (82)
T ss_pred EEEEeC
Confidence 877754
No 167
>cd07702 Ig2_VEGFR-1 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1). Ig2_VEGFR-1: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1). VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-1 binds VEGF-A strongly; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-1 may play an inhibitory rolet in the function of VEGFR-2 by binding VEGF-A and interfering with its interaction with VEGFR-2. VEGFR-1 has a signaling role in mediating monocyte chemotaxis and may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.
Probab=99.30 E-value=1.5e-11 Score=85.69 Aligned_cols=69 Identities=19% Similarity=0.264 Sum_probs=54.7
Q ss_pred EEEEEEecccCCcceeEEEeeCCEEeccccCCccCCCeeEecCCeEEEeecCCCCCEeEEEEEEeCCCceEEEEEEE
Q psy12061 99 LQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEITNASFADAGEYECVVKSTVGKISTKTTVI 175 (626)
Q Consensus 99 ~~l~C~~~~~p~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~a~n~~g~~~~~~~l~ 175 (626)
+.|.|.+.|.|.|. +.|+|||.++.... .++...+..|.|.+++.+|+|.|+|.|.|..........+.
T Consensus 1 ~~l~c~v~g~P~P~--v~W~kdg~~l~~~~------~~~~~~~~~L~I~~v~~~D~G~YtC~a~~~~~~~~~~~~i~ 69 (72)
T cd07702 1 YRLTPKVKAFPAPE--VIWLKDGLPAAEKC------SRYHVDGYSLVIKDVTEEDAGIYTILLGIKQYNLFKNLTIT 69 (72)
T ss_pred CeEEeeEEEcCCCe--EEEEECCEECCCCC------cEEEeCCCEEEECcCCHHHCEEEEEEEEccccceEeeEEEE
Confidence 47999999999985 48999999986532 34555667999999999999999999999866554444433
No 168
>smart00408 IGc2 Immunoglobulin C-2 Type.
Probab=99.30 E-value=1.8e-11 Score=85.19 Aligned_cols=63 Identities=40% Similarity=0.679 Sum_probs=53.5
Q ss_pred CCceEEEEeeeCCCCCCeeEEEeCCEEccCCCcEEEccCCcEEEccCCCCCCEEEEEEEEcCCC
Q psy12061 4 EGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTATNVHG 67 (626)
Q Consensus 4 ~G~~~~l~C~~~g~p~p~i~W~~~~~~i~~~~~~~~~~~g~L~i~~v~~~d~G~Y~C~a~n~~g 67 (626)
+|++++|.|.+.+.|.+.+.|++++..+. ........++.|.|.+++.+|+|.|+|.+.|..|
T Consensus 1 ~g~~~~l~C~~~~~~~~~v~W~~~~~~~~-~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~n~~g 63 (63)
T smart00408 1 EGQSVTLTCPAEGDPVPNITWLKDGKPLP-ESNRLSASGSTLTIKSVSLEDSGEYTCVAENSAG 63 (63)
T ss_pred CCceEEEEeeCccCCCCeEEEEECCEECC-CCCEEecCCcEEEEeeCCcccCEEEEEEEecCCC
Confidence 68999999999999999999999999887 3333334456899999999999999999998765
No 169
>cd05763 Ig_1 Subgroup of the immunoglobulin (Ig) superfamily. Ig_1: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=99.29 E-value=2e-11 Score=87.70 Aligned_cols=72 Identities=22% Similarity=0.422 Sum_probs=56.6
Q ss_pred EEEEEEecccCCcceeEEEeeCCEEeccccCCccCCCeeE--ecCCeEEEeecCCCCCEeEEEEEEeCCCceEEEEEEEE
Q psy12061 99 LQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNIN--IDGGLLEITNASFADAGEYECVVKSTVGKISTKTTVIV 176 (626)
Q Consensus 99 ~~l~C~~~~~p~p~~~i~W~~~~~~~~~~~~~~~~~~~~~--~~~~~l~i~~~~~~d~g~Y~C~a~n~~g~~~~~~~l~v 176 (626)
++|.|.+.|.|.|. +.|+|+|....... ...++. ..++.|.|.+++.+|+|.|+|.|.|..|..+..+.|.|
T Consensus 1 a~l~C~~~G~P~P~--v~W~k~~~~~~~~~----~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~A~N~~G~~~~~~~l~V 74 (75)
T cd05763 1 ARLECAATGHPTPQ--IAWQKDGGTDFPAA----RERRMHVMPEDDVFFIVDVKIEDTGVYSCTAQNTAGSISANATLTV 74 (75)
T ss_pred CEeEeecccccCCE--EEEEeCCCccCCcc----cccceEEecCCCEEEEeeCCcccCEEEEEEEEcCCCEEEeeEEEEE
Confidence 47999999999885 58999986432211 112333 34578999999999999999999999999999998887
No 170
>cd05855 Ig_TrkB_d5 Fifth domain (immunoglobulin-like) of Trk receptor TrkB. TrkB_d5: the fifth domain of Trk receptor TrkB, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors, which mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. The Trks are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkB shares significant sequence homology and domain organization with TrkA, and TrkC. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. In some cell systems NT-3 can activate TrkA and TrkB receptors. TrKB transcripts are found throughout multiple structures of the central and peripheral nervous systems.
Probab=99.29 E-value=1.5e-11 Score=87.20 Aligned_cols=74 Identities=16% Similarity=0.232 Sum_probs=55.4
Q ss_pred EEEEEecccCCcceeEEEeeCCEEeccccCCccC--CCeeEecCCeEEEeecCCCCCEeEEEEEEeCCCceEEEEEEE
Q psy12061 100 QLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELE--TPNINIDGGLLEITNASFADAGEYECVVKSTVGKISTKTTVI 175 (626)
Q Consensus 100 ~l~C~~~~~p~p~~~i~W~~~~~~~~~~~~~~~~--~~~~~~~~~~l~i~~~~~~d~g~Y~C~a~n~~g~~~~~~~l~ 175 (626)
.|.|.+.|.|.|.+ +|+|||.++......... ........+.|.|.++...|+|.|+|.|.|..|..+.++.+.
T Consensus 2 ~i~~~v~G~P~Pti--~W~kng~~l~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~YtC~A~N~~G~~~~~~~~~ 77 (79)
T cd05855 2 CIPFTVKGNPKPTL--QWFHEGAILNESEYICTKIHVINNTEYHGCLQLDNPTHLNNGIYTLVAKNEYGEDEKNVSAH 77 (79)
T ss_pred eEEEEEeEeCCCce--EEEECCEECCCCcceeeeeEeecccceEEEEEECCCCcccCEEEEEEEEcCCcccceEEEee
Confidence 47899999999865 899999999754310000 000011345899999999999999999999999988877654
No 171
>cd04974 Ig3_FGFR Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Ig3_FGFR: third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs.
Probab=99.29 E-value=1.4e-11 Score=91.81 Aligned_cols=79 Identities=20% Similarity=0.414 Sum_probs=57.5
Q ss_pred CCcEEEEEEecccCCcceeEEEeeCC----EEeccccCCcc------CCCeeEecCCeEEEeecCCCCCEeEEEEEEeCC
Q psy12061 96 HRNLQLRCSAHTEELLDVAYIWTHNG----VRIGNMDLNEL------ETPNINIDGGLLEITNASFADAGEYECVVKSTV 165 (626)
Q Consensus 96 g~~~~l~C~~~~~p~p~~~i~W~~~~----~~~~~~~~~~~------~~~~~~~~~~~l~i~~~~~~d~g~Y~C~a~n~~ 165 (626)
|++++|.|.+.+.|.|. |+|+|++ ..+........ ...........|.|.+++.+|+|.|+|.|.|..
T Consensus 1 G~~v~l~C~v~g~P~P~--i~W~k~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~ 78 (90)
T cd04974 1 GSDVEFHCKVYSDAQPH--IQWLKHVEVNGSKYGPDGLPYVTVLKVAGINTTDNESEVLYLRNVSFDDAGEYTCLAGNSI 78 (90)
T ss_pred CCcEEEEEEEeCCCCCe--EEEEEecccCCceeCCCCCceEEEEEecCCcccccccceEEEeccccccCcEEEEEeeccc
Confidence 78999999999999885 5899963 33321111000 000111133589999999999999999999999
Q ss_pred CceEEEEEEEE
Q psy12061 166 GKISTKTTVIV 176 (626)
Q Consensus 166 g~~~~~~~l~v 176 (626)
|...+++.|.|
T Consensus 79 G~~~~sa~L~V 89 (90)
T cd04974 79 GPSHHSAWLTV 89 (90)
T ss_pred CcccCCEEEEe
Confidence 99999999887
No 172
>cd05873 Ig_Sema4D_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4D. Ig_Sema4D_like; Immunoglobulin (Ig)-like domain of Sema4D. Sema4D is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4D has extracellular Sema and Ig domains, a transmembrane domain, and a short cytoplasmic domain. Sema4D plays a part in the development of GABAergic synapses. Sema4D in addition is an immune semaphorin. It is abundant on resting T cells; its expression is weak on resting B cells and antigen presenting cells (APCs), but is upregulated by various stimuli. The receptor used by Sema4D in the immune system is CD72. Sem4D enhances the activation of B cells and DCs through binding CD72, perhaps by reducing CD72s inhibitory signals. The receptor used by Sema4D in the non-lymphatic tissues is plexin-B1. Sem4D is anchored to the cell surface but its extracellular domain can be released from the cell surface by a metalloproteas
Probab=99.28 E-value=5.3e-11 Score=86.15 Aligned_cols=69 Identities=29% Similarity=0.450 Sum_probs=58.2
Q ss_pred CCceEEecCCcEEEEEEecccCCcceeEEEeeCCEEeccccCCccCCCeeEecCCeEEEeecCCCCCEeEEEEEEeCC
Q psy12061 88 PPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEITNASFADAGEYECVVKSTV 165 (626)
Q Consensus 88 ~~~~~v~~g~~~~l~C~~~~~p~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~a~n~~ 165 (626)
|.+..+..|+++.|.|.+.+ +.+ +|.|++||.++.... .++.+.++.|.|.+++.+|+|.|+|.|.+..
T Consensus 3 P~~~~v~~G~~v~L~C~~~~-~~~--~i~W~~ng~~i~~~~------~r~~~~~~~L~I~nv~~~DsG~Y~C~a~e~~ 71 (87)
T cd05873 3 PRQRTFKLGNNAELKCSPKS-NLA--RVVWKFDGKVLTPES------AKYLLYRDGLLIFNASEADAGRYQCLSVEKS 71 (87)
T ss_pred cceEEEECCCCEEEEEECCC-CCC--eEEEEECCEECCCCC------ceEEEECCcEEEeCCCHHHCEEEEEEEEecc
Confidence 67889999999999999754 433 679999999997542 4666778899999999999999999998764
No 173
>cd04977 Ig1_NCAM-1_like First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1 and similar proteins. Ig1_NCAM-1 like: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the s
Probab=99.28 E-value=5.5e-11 Score=88.84 Aligned_cols=81 Identities=22% Similarity=0.358 Sum_probs=61.0
Q ss_pred CCCceEEecCCcEEEEEEecccCCcceeEEEee-CCEEeccccCCccCCCeeEe----cCCeEEEeecCCCCCEeEEEEE
Q psy12061 87 LPPKITIAAHRNLQLRCSAHTEELLDVAYIWTH-NGVRIGNMDLNELETPNINI----DGGLLEITNASFADAGEYECVV 161 (626)
Q Consensus 87 ~~~~~~v~~g~~~~l~C~~~~~p~p~~~i~W~~-~~~~~~~~~~~~~~~~~~~~----~~~~l~i~~~~~~d~g~Y~C~a 161 (626)
.|.+..+..|+++.|.|.+.|.| + .+.|++ ++..+.... ..... ..+.|.|.+++.+|+|.|+|.|
T Consensus 6 ~p~~~~v~~G~~~~l~C~~~G~p-~--~i~W~~~~~~~~~~~~------~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A 76 (92)
T cd04977 6 VPSQGEISVGESKFFLCQVIGEP-K--DISWFSPNGEKLVTQQ------QISVVQNDDVRSTLTIYNANIEDAGIYKCVA 76 (92)
T ss_pred ecCcEEECCCCeEEEEEEeEeeC-C--eEEEECCCCCEeccCC------CEEEEeCCCCEEEEEEecCCcccCEEEEEEE
Confidence 46678899999999999999986 3 568997 676665421 11111 2248999999999999999999
Q ss_pred EeCCC-ceEEEEEEEE
Q psy12061 162 KSTVG-KISTKTTVIV 176 (626)
Q Consensus 162 ~n~~g-~~~~~~~l~v 176 (626)
.|..| ..++++.|.|
T Consensus 77 ~N~~g~~~~~sv~l~~ 92 (92)
T cd04977 77 TDAKGTESEATVNLKI 92 (92)
T ss_pred EcCCCCcceeEEEEEC
Confidence 99865 5567776653
No 174
>cd05743 Ig_Perlecan_D2_like Immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2. Ig_Perlecan_D2_like: the immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2. Perlecan consists of five domains. Domain I has three putative heparan sulfate attachment sites; domain II has four LDL receptor-like repeats, and one Ig-like repeat; domain III resembles the short arm of laminin chains; domain IV has multiple Ig-like repeats (21 repeats in human perlecan); and domain V resembles the globular G domain of the laminin A chain and internal repeats of EGF. Perlecan may participate in a variety of biological functions including cell binding, LDL-metabolism, basement membrane assembly and selective permeability, calcium binding, and growth- and neurite-promoting activities.
Probab=99.27 E-value=2e-11 Score=88.29 Aligned_cols=72 Identities=21% Similarity=0.300 Sum_probs=58.0
Q ss_pred CCcEEEEEEecccCCcceeEEEeeCCEEeccccCCccCCCeeEe----cCCeEEEeecCCCCCEeEEEEEEeCCCceEEE
Q psy12061 96 HRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINI----DGGLLEITNASFADAGEYECVVKSTVGKISTK 171 (626)
Q Consensus 96 g~~~~l~C~~~~~p~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~----~~~~l~i~~~~~~d~g~Y~C~a~n~~g~~~~~ 171 (626)
|++++|.|.+.|.|.|. +.|++++..+... .++.. ..+.|.|.++..+|+|.|+|.|.|..|.....
T Consensus 1 G~~v~l~C~~~g~P~p~--v~W~~~~~~~~~~-------~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~ 71 (78)
T cd05743 1 GETVEFTCVATGVPTPI--INWRLNWGHVPDS-------ARVSITSEGGYGTLTIRDVKESDQGAYTCEAINTRGMVFGI 71 (78)
T ss_pred CCEEEEEEEEEEecCCE--EEEEECCeECCCC-------CCEEEEECCCEEEEEECCCChHHCEEEEEEEEecCCEEEec
Confidence 78999999999999875 5899998887543 22221 23589999999999999999999999988776
Q ss_pred EEEEE
Q psy12061 172 TTVIV 176 (626)
Q Consensus 172 ~~l~v 176 (626)
+.+.+
T Consensus 72 ~~~~~ 76 (78)
T cd05743 72 PDGIL 76 (78)
T ss_pred ccEEE
Confidence 66554
No 175
>cd05858 Ig3_FGFR-2 Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor 2 (FGFR2). Ig3_FGFR-2-like; domain similar to the third immunoglobulin (Ig)-like domain of human fibroblast growth factor receptor 2 (FGFR2). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs. FGFR2 is required for male sex determination.
Probab=99.26 E-value=3.2e-11 Score=90.04 Aligned_cols=79 Identities=23% Similarity=0.471 Sum_probs=57.7
Q ss_pred CCcEEEEEEecccCCcceeEEEeeC----CEEeccccCCcc---CCCeeEe---cCCeEEEeecCCCCCEeEEEEEEeCC
Q psy12061 96 HRNLQLRCSAHTEELLDVAYIWTHN----GVRIGNMDLNEL---ETPNINI---DGGLLEITNASFADAGEYECVVKSTV 165 (626)
Q Consensus 96 g~~~~l~C~~~~~p~p~~~i~W~~~----~~~~~~~~~~~~---~~~~~~~---~~~~l~i~~~~~~d~g~Y~C~a~n~~ 165 (626)
|++++|.|.+.+.|.|. |.|+|+ |..+.....+.. ....... ..+.|.|.+++.+|+|.|+|.|.|..
T Consensus 1 G~~v~L~C~~~g~P~P~--i~W~k~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~ 78 (90)
T cd05858 1 GSTVEFVCKVYSDAQPH--IQWLKHVEKNGSKYGPDGLPYVTVLKTAGVNTTDKEMEVLYLRNVTFEDAGEYTCLAGNSI 78 (90)
T ss_pred CCeEEEEEEEecCCCCE--EEEEEecccCCcEeCCCCCeeEEEeccCCceecCCceeEEEEccCCHHHCEEEEEEEEeCC
Confidence 78999999999999885 589984 444443221100 0000000 12579999999999999999999999
Q ss_pred CceEEEEEEEE
Q psy12061 166 GKISTKTTVIV 176 (626)
Q Consensus 166 g~~~~~~~l~v 176 (626)
|....++.|.|
T Consensus 79 G~~~~~a~L~V 89 (90)
T cd05858 79 GISHHSAWLTV 89 (90)
T ss_pred CcccceEEEEE
Confidence 99999999887
No 176
>cd04971 Ig_TrKABC_d5 Fifth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC. TrkABC_d5: the fifth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrkB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor foun
Probab=99.25 E-value=3.6e-11 Score=86.80 Aligned_cols=73 Identities=18% Similarity=0.270 Sum_probs=55.6
Q ss_pred EEEEEecccCCcceeEEEeeCCEEeccccCCccCCCe-----eEecCCeEEEeecCCCCCEeEEEEEEeCCCceEEEEEE
Q psy12061 100 QLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPN-----INIDGGLLEITNASFADAGEYECVVKSTVGKISTKTTV 174 (626)
Q Consensus 100 ~l~C~~~~~p~p~~~i~W~~~~~~~~~~~~~~~~~~~-----~~~~~~~l~i~~~~~~d~g~Y~C~a~n~~g~~~~~~~l 174 (626)
.|.|.+.|.|.|.+ +|+|||.++........ ..+ .....+.|.|.+++..|+|.|+|.|.|..|..+..+.+
T Consensus 2 ~i~~~v~G~P~P~v--~W~k~g~~i~~~~~~~~-~~~~~~~~~~~~~~~L~I~~~~~~D~G~YtC~A~N~~G~~~~~~~~ 78 (81)
T cd04971 2 CIPFTVRGNPKPTL--TWYHNGAVLNESDYIRT-EIHYEVTTPTEYHGCLQFDNPTHVNNGNYTLVASNEYGQDSKSISA 78 (81)
T ss_pred eEEEEeEeeCCCcE--EEEECCEECcCCCceeE-EEEeecccccccEEEEEECCCCcccCeEEEEEEEeCCCCeeeEEEe
Confidence 37899999999855 89999999976531000 000 01124579999999999999999999999999888776
Q ss_pred E
Q psy12061 175 I 175 (626)
Q Consensus 175 ~ 175 (626)
.
T Consensus 79 ~ 79 (81)
T cd04971 79 H 79 (81)
T ss_pred e
Confidence 5
No 177
>cd05754 Ig3_Perlecan_like Third immunoglobulin (Ig)-like domain found in Perlecan and similar proteins. Ig3_Perlecan_like: domain similar to the third immunoglobulin (Ig)-like domain found in Perlecan. Perlecan is a large multi-domain heparin sulfate proteoglycan, important in tissue development and organogenesis. Perlecan can be represented as 5 major portions; its fourth major portion (domain IV) is a tandem repeat of immunoglobulin-like domains (Ig2-Ig15), which can vary in size due to alternative splicing. Perlecan binds many cellular and extracellular ligands. Its domain IV region has many binding sites. Some of these have been mapped at the level of individual Ig-like domains, including a site restricted to the Ig5 domain for heparin/sulfatide, a site restricted to the Ig3 domain for nidogen-1 and nidogen-2, a site restricted to Ig4-5 for fibronectin, and sites restricted to Ig2 and to Ig13-15 for fibulin-2.
Probab=99.25 E-value=4.2e-11 Score=88.48 Aligned_cols=78 Identities=21% Similarity=0.388 Sum_probs=63.7
Q ss_pred eCCCceEEecCCcEEEEEEecc-cCCcceeEEEeeCCEEeccccCCccCCCeeEecCCeEEEeecCCCCCEeEEEEEEeC
Q psy12061 86 QLPPKITIAAHRNLQLRCSAHT-EELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEITNASFADAGEYECVVKST 164 (626)
Q Consensus 86 ~~~~~~~v~~g~~~~l~C~~~~-~p~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~a~n~ 164 (626)
.+|....+.+|++++|.|.+.+ .|. ..+.|++++..+.. +....++.|.|.+++.+|+|.|+|.|.|.
T Consensus 6 ~~p~~~~v~~G~~v~L~C~~~~~~~~--~~i~W~~~~~~~~~---------~~~~~~~~L~I~~v~~~DsG~Y~C~a~n~ 74 (85)
T cd05754 6 EEPRSQEVRPGADVSFICRAKSKSPA--YTLVWTRVGGGLPS---------RAMDFNGILTIRNVQLSDAGTYVCTGSNM 74 (85)
T ss_pred cCCCceEEcCCCCEEEEEEcCCCCCC--cEEEEEECCCcCCC---------cccccCCEEEECCCCHHHCEEEEEEEecc
Confidence 4677889999999999999976 444 46799999876532 12224678999999999999999999999
Q ss_pred CCceEEEEEE
Q psy12061 165 VGKISTKTTV 174 (626)
Q Consensus 165 ~g~~~~~~~l 174 (626)
.|..+..+.|
T Consensus 75 ~g~~~~~~~l 84 (85)
T cd05754 75 LDTDEATATL 84 (85)
T ss_pred CCeEeEEEEE
Confidence 9999888876
No 178
>PHA02826 IL-1 receptor-like protein; Provisional
Probab=99.24 E-value=3.4e-10 Score=99.40 Aligned_cols=164 Identities=10% Similarity=0.055 Sum_probs=100.9
Q ss_pred CCceEEecCCcEEEEEEecccCC---------cceeEEEeeCCEEec--cccC----CccCCCeeEecCCeEEEeecCCC
Q psy12061 88 PPKITIAAHRNLQLRCSAHTEEL---------LDVAYIWTHNGVRIG--NMDL----NELETPNINIDGGLLEITNASFA 152 (626)
Q Consensus 88 ~~~~~v~~g~~~~l~C~~~~~p~---------p~~~i~W~~~~~~~~--~~~~----~~~~~~~~~~~~~~l~i~~~~~~ 152 (626)
...+.+.+|+++.|.|.+.+.|. ....++|+|++...- .... ......++...++.|.|.+++.+
T Consensus 29 ~~~~~v~eGe~v~L~C~~~~~~~~~~~~~~~~~~~~V~W~k~~s~~~v~~~~~~~~~~~i~~~~~~~r~~~L~I~~v~~~ 108 (227)
T PHA02826 29 LTPVYAKFGDPMVLLCTGKHYKKSIFFDKTFITSYNVTWSKTDSLAFVRDSGARTKIKKITHNEIGDRSENLWIGNVINI 108 (227)
T ss_pred cceEEecCCCCEEEEccccccccccccccccCCCccEEEEeCCeEEEEEcCCCccccccccccceecCCCeEEECCCChH
Confidence 35678899999999999877553 345779999876521 1000 00001122223679999999999
Q ss_pred CCEeEEEEEEeCCCceEEEEEEEEeCCCCCCCceEEEEEeccceEEEEecCCCC--CCcccEEEEEEeecCCCCceEeec
Q psy12061 153 DAGEYECVVKSTVGKISTKTTVIVEGPPGLPGGVQVVEVHKTSATIQWTDGATN--GRPITHYKIIARTNWNSTWFNVSE 230 (626)
Q Consensus 153 d~g~Y~C~a~n~~g~~~~~~~l~v~~~P~~p~~~~~~~~~~~~~~l~W~~~~~~--~~~~~~y~v~~~~~~~~~w~~~~~ 230 (626)
|+|.|+|.|.|..|.....+.|.|..++ .++ ....+..+.|.|...... +.+. -.|. |.+.+.
T Consensus 109 DsG~Y~C~a~N~~~~~~~~i~L~V~~~~---~~~--~~~~G~~v~L~C~~~~~~~~~~p~--p~I~--------WyKng~ 173 (227)
T PHA02826 109 DEGIYICTISSGNICEESTIRLTFDSGT---INY--QFNSGKDSKLHCYGTDGISSTFKD--YTLT--------WYKNGN 173 (227)
T ss_pred HCEEEEEEEEECCcceEEEEEEEEecCC---ccc--eEecCCCEEEEeeCCCCccccCCC--ceEE--------EEECCE
Confidence 9999999999999888888888885332 222 223456788888743211 1111 1233 444333
Q ss_pred ceeeeeeecc-CCceeEEEEeeccCCceEEEEEEEecC
Q psy12061 231 HVIGKEVDRY-TGRKEASIENVLVPWSTYEFKVIAGNE 267 (626)
Q Consensus 231 ~~~~~~~~~~-~~~~~~~i~~~l~~~~~y~~~v~a~n~ 267 (626)
.+.....-.+ .....+.+.+ +...+.+.|+|.|...
T Consensus 174 ~l~~~~r~~~~~~~~~L~I~~-V~~~DsG~YtC~a~~~ 210 (227)
T PHA02826 174 IVLYTDRIQLRNNNSTLVIKS-ATHDDSGIYTCNLRFN 210 (227)
T ss_pred ECCCCCCEEEeCCCCEEEECc-CCHHhCEEEEEEEEEe
Confidence 2211111011 1223566655 9999999999999875
No 179
>KOG3515|consensus
Probab=99.23 E-value=8.4e-10 Score=110.02 Aligned_cols=391 Identities=15% Similarity=0.155 Sum_probs=216.7
Q ss_pred CCCceEEEEeee-CCCCCCeeEEEeCCEEccCCCcE--EEccCC-----cEEEccCCCCCCEEEEEEEEcCCCCceee--
Q psy12061 3 GEGGNVTIFCNP-EAAPKPKFVWKKDGNIIGSGGRR--KIFENG-----NLLISPVSRDDSGIYSCTATNVHGMDESK-- 72 (626)
Q Consensus 3 ~~G~~~~l~C~~-~g~p~p~i~W~~~~~~i~~~~~~--~~~~~g-----~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~-- 72 (626)
..|+...+.|.. .++|.+.+.|+|+......+... .....+ .+.+.-+...|.|.|.|.|.|......++
T Consensus 313 s~g~s~r~~c~~sss~p~~~i~w~~~~~~~~~~~~~~~~t~~~~~v~~~~~~~q~~~~~~~g~v~c~a~~~~~~~~sss~ 392 (741)
T KOG3515|consen 313 SSGRSARSSCVSSSSKPPAHIAWYKDTKMPKGSQKASSKTSNMGGVAVISHYAQPSSQQDGGQVTCPADNLELAHSSSSS 392 (741)
T ss_pred ccccccccceeccCCCCccceeeeccCcccccccCcccCCCcccceeeEEeeecccchhcCceEEccccccccccccccc
Confidence 568888888887 55688899999966544321100 111111 36666677889999999999887654443
Q ss_pred EEEEEEeCCceeeeCCCceEEecCCcEEEEEEecccCCcceeEEEeeCCEEeccccCCccCCCeeEecCCeEEEeecCCC
Q psy12061 73 GRLIVLHGPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEITNASFA 152 (626)
Q Consensus 73 ~~l~v~~~p~~~~~~~~~~~v~~g~~~~l~C~~~~~p~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~ 152 (626)
..+.|...|.++..........+++.....-.+.+.|... .+.|.+++.++.... ....++........+.++.+.
T Consensus 393 ~~l~~l~~p~~L~~~~~~v~~~e~d~~~~~~~~~~~p~~~-~~~w~~~~~~~~~~~---g~~~~v~~~~~~~s~~~v~~~ 468 (741)
T KOG3515|consen 393 FLLPVLPSPAFLVRHKTAVVAMEQDHQAAPLPVRGAPAER-TFYWTFRLYKLSQVD---GGVVRVGAGAGLGSGVNVSRS 468 (741)
T ss_pred eeccccCCchhhhhcccceeeccCccccccCcccCCCccc-chhheecceeccccc---CceEEeeccccccccceeeec
Confidence 5667777888777667777778888777776666777654 679999998887542 001233334455667889999
Q ss_pred CCEeEEEEEEeCCCceEEEEEEEEeCCCC-CCCceEEEEEeccceEEEEecCCCCCCcccEEEEEEeecCCCCceEeecc
Q psy12061 153 DAGEYECVVKSTVGKISTKTTVIVEGPPG-LPGGVQVVEVHKTSATIQWTDGATNGRPITHYKIIARTNWNSTWFNVSEH 231 (626)
Q Consensus 153 d~g~Y~C~a~n~~g~~~~~~~l~v~~~P~-~p~~~~~~~~~~~~~~l~W~~~~~~~~~~~~y~v~~~~~~~~~w~~~~~~ 231 (626)
|.|.|.|.+.|..|.+.....+.+...|. -+.+..+.....+++...+... + .+...-. ..|.+....
T Consensus 469 d~g~y~~tatns~gg~~~~~~~~~~~sp~~~~~~~~~~~~~~ns~~~~~~q~-~--~~~~~~m--------~~~~r~ge~ 537 (741)
T KOG3515|consen 469 DGGSYGLTATNSPGGAQAYLLLGVHTSPHNHHLQDQVEGATGNSVDGECMQD-E--QPQDQQM--------HHEPRSGEP 537 (741)
T ss_pred cCCcceeeeccCCCceeeEEeeccccCCcccccccccccCCCCcccceeecc-c--cccchhh--------hcccccCCC
Confidence 99999999999999998888877765443 3444445455555544333321 1 1111111 122221111
Q ss_pred eeeee-----eeccCCceeEEEEeeccCCceEEEEEEEecCCccCCCCCCCCcccCCC--CCCCCCCceeEee-------
Q psy12061 232 VIGKE-----VDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPSPQYNTPA--DKPYQAPSRIGGG------- 297 (626)
Q Consensus 232 ~~~~~-----~~~~~~~~~~~i~~~l~~~~~y~~~v~a~n~~g~~~~s~~~~~~~~~~--~~p~~~p~~~~~~------- 297 (626)
..... ......+..+.+.. -.....|.+.|.+.+ . +.++.......... ..-..+| ++...
T Consensus 538 ~~~~~~~~~~~~~~~~~a~~~~~~-~~~~~~~~~~~~~d~-~--~~pA~~~~~l~~~s~~~v~~~tp-~~~~~~~g~v~a 612 (741)
T KOG3515|consen 538 PSDQIDQDAPQQQLMAHAQLLVSG-NSSLQASETACVVDG-S--SPPAGLSLVLKAYSALIVTVRTP-NMYTAQEGCVNA 612 (741)
T ss_pred CcccccccccccccCCccceeecc-cccccccceEEeecC-C--CCccccceEEEecccccccccCC-ceeeeccCcccc
Confidence 10000 00001111222222 444455677777666 1 11221111111110 0000111 11111
Q ss_pred -----cCCcCeEEEEEeeCCCCCcccCcceEEEEEEecCCCcceeeeeeeecceeeEEEEeCCCcceeEEEEEEEEecCC
Q psy12061 298 -----GGKIGDLSISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETLKEYGNVGIAVVRIPSEFYYTEYEVKVQAINDV 372 (626)
Q Consensus 298 -----~~~~~~v~l~W~~~~~~~~~~~~~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~p~~~Y~~~v~a~n~~ 372 (626)
....-+....|...|.....+ ...|..-+.. ...+..+..+-+--++..|.+.|.+.|..
T Consensus 613 s~~~~a~~~~~~~~~~~k~p~~~~~~-~~~~~~~~~~--------------~~~~s~~~~~~~~~~~~~y~~~c~t~n~l 677 (741)
T KOG3515|consen 613 SDDCVASGVPSTSFTTAKTPLQTTEG-PHIREKATQQ--------------GQTHSSSEWILNHIDGSDYENGCTTQNLL 677 (741)
T ss_pred cccceecccccceeecccCCCcccCC-ceEEEeeeec--------------cccccccccccCCcchhhhcceeeecccC
Confidence 111223334444422211111 1111111100 01111222233445678899999999999
Q ss_pred CCCCCCccEEEEccCCCCCCCCCceEEEeeecceEEEEeeeccccccccceeeEEEEEEEEecCC
Q psy12061 373 GPGPESEVVTIFSAEDMPQVAPQGVFSRGFNSTAINVTWNPIELIRENIRGRLIGHRIKYWKEDN 437 (626)
Q Consensus 373 g~~~~s~~~~~~t~~~~p~~~p~~~~~~~~~~~si~l~W~~~~~~~~~~~~~i~~Y~v~~~~~~~ 437 (626)
|.+.-+.....-+... .|.++.........+.|.|.+--+. |.-.+|.+.|...+.
T Consensus 678 g~~~v~~~~~~~t~~~----~~~n~~~~~~~~~~i~l~~~p~fdg-----g~~q~f~~~~~~~~~ 733 (741)
T KOG3515|consen 678 GSDHVSGAIHSGTASV----GPINLTYDNLTYSTISLEWMPGFDG-----GLQQRFFLKYYDLGT 733 (741)
T ss_pred CCccccceecCCcCCC----CccceEeeeeeeeeeceeeeecccc-----ccccceeeehhhcCC
Confidence 9887766655444333 6779999999999999999986643 446678888765544
No 180
>cd05753 Ig2_FcgammaR_like Second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins. Ig2_FcgammaR_like: domain similar to the second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.
Probab=99.23 E-value=4.2e-11 Score=87.20 Aligned_cols=65 Identities=26% Similarity=0.313 Sum_probs=53.5
Q ss_pred CCCCceEEEEeeeCC-CCCCeeEEEeCCEEccCCCcEEEccCCcEEEccCCCCCCEEEEEEEEcCCCCcee
Q psy12061 2 AGEGGNVTIFCNPEA-APKPKFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTATNVHGMDES 71 (626)
Q Consensus 2 ~~~G~~~~l~C~~~g-~p~p~i~W~~~~~~i~~~~~~~~~~~g~L~i~~v~~~d~G~Y~C~a~n~~g~~~~ 71 (626)
|.+|+.++|.|.+.+ .+.+.+.|+|+|..+... ..+++|.|.+++.+|+|.|+|.|.|..|...+
T Consensus 11 V~~G~~vtL~C~~~~~~~~~~~~w~k~g~~~~~~-----~~~~~l~I~~~~~~dsG~Y~C~~~~~~~~~~s 76 (83)
T cd05753 11 VFEGEPLVLRCHGWKNKPVYKVTYYRDGKAKKYS-----HSNSNLSIPQATLSDSGSYHCSGIIGSYDYSS 76 (83)
T ss_pred ecCCCCEEEEeeCCCCCcceEEEEEECCeEcccc-----CCCceEEECccCHHHCEEEEEEEEeCCceecC
Confidence 578999999999954 567799999999877421 12457999999999999999999999886443
No 181
>cd05765 Ig_3 Subgroup of the immunoglobulin (Ig) superfamily. Ig_3: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=99.22 E-value=7.8e-11 Score=86.45 Aligned_cols=77 Identities=19% Similarity=0.275 Sum_probs=56.8
Q ss_pred CCcEEEEEEecccCCcceeEEEeeCCE---EeccccCCccCCCee-EecCCeEEEeecCCCCCEeEEEEEEeCCCceEEE
Q psy12061 96 HRNLQLRCSAHTEELLDVAYIWTHNGV---RIGNMDLNELETPNI-NIDGGLLEITNASFADAGEYECVVKSTVGKISTK 171 (626)
Q Consensus 96 g~~~~l~C~~~~~p~p~~~i~W~~~~~---~~~~~~~~~~~~~~~-~~~~~~l~i~~~~~~d~g~Y~C~a~n~~g~~~~~ 171 (626)
|++++|.|.+.+.|.|. +.|+|++. .+.... .....++ ....+.|.|.+++.+|+|.|+|.|.|..|.....
T Consensus 1 G~~v~l~C~~~g~P~p~--v~W~k~~~~~~~~~~~~--~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~ 76 (81)
T cd05765 1 GETASFHCDVTGRPPPE--ITWEKQVHGKENLIMRP--NHVRGNVVVTNIGQLVIYNAQPQDAGLYTCTARNSGGLLRAN 76 (81)
T ss_pred CCcEEEEeeccccCCCc--EEEEecCCCCcceeecC--CcccCCEEEccccEEEEccCCcccCEEEEEEEecCCceEEEE
Confidence 78999999999999875 58999742 111100 0001122 2245789999999999999999999999999888
Q ss_pred EEEEE
Q psy12061 172 TTVIV 176 (626)
Q Consensus 172 ~~l~v 176 (626)
+.|.|
T Consensus 77 ~~l~v 81 (81)
T cd05765 77 FPLSV 81 (81)
T ss_pred EEEeC
Confidence 88764
No 182
>cd05742 Ig1_VEGFR_like First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor (R) and similar proteins. Ig1_VEGFR_like: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R) related proteins. The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF-A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF
Probab=99.21 E-value=7.4e-11 Score=86.88 Aligned_cols=81 Identities=26% Similarity=0.334 Sum_probs=59.5
Q ss_pred CCcEEEEEEecccCCcceeEEEeeCCEEeccccCCc--cCCCeeEecCCeEEEeecCCCCCEeEEEEEEeCCCceEEEEE
Q psy12061 96 HRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNE--LETPNINIDGGLLEITNASFADAGEYECVVKSTVGKISTKTT 173 (626)
Q Consensus 96 g~~~~l~C~~~~~p~p~~~i~W~~~~~~~~~~~~~~--~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~a~n~~g~~~~~~~ 173 (626)
|++++|.|.+.+.+.|.+.+.|.+++..+....... ..........+.|.|.+++.+|+|.|+|.|.|..|..+.++.
T Consensus 1 Ge~~~L~C~~~g~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~v~~~DsG~Y~C~a~n~~~~~~~s~~ 80 (84)
T cd05742 1 GETLVLNCTVLTELNEGVDFQWTYPGKKRGRGKSMVTRQSLSEATELSSTLTIPNATLKDSGTYTCAASSGTMDQKESTK 80 (84)
T ss_pred CCeEEEEEEEEeCCCccEEEEEecCCcccCCceEeecccccccceEEEEEEEECCCChhhCEEEEEEEccCCCceEEEEE
Confidence 789999999999954445779998887654221000 000011123468999999999999999999999999999888
Q ss_pred EEE
Q psy12061 174 VIV 176 (626)
Q Consensus 174 l~v 176 (626)
|.|
T Consensus 81 v~v 83 (84)
T cd05742 81 VNI 83 (84)
T ss_pred EEE
Confidence 876
No 183
>cd05862 Ig1_VEGFR First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R). IG1_VEGFR: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF_A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angioge
Probab=99.20 E-value=6.5e-11 Score=86.90 Aligned_cols=74 Identities=24% Similarity=0.403 Sum_probs=57.1
Q ss_pred CceEEEEeeeCCCCC--CeeEEEeCCEEccC---CC--cEEEc----cCCcEEEccCCCCCCEEEEEEEEcCCCCceeeE
Q psy12061 5 GGNVTIFCNPEAAPK--PKFVWKKDGNIIGS---GG--RRKIF----ENGNLLISPVSRDDSGIYSCTATNVHGMDESKG 73 (626)
Q Consensus 5 G~~~~l~C~~~g~p~--p~i~W~~~~~~i~~---~~--~~~~~----~~g~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~ 73 (626)
|++++|.|.+.+.|. .++.|.+.+..+.. .. +.... ....|.|.+++.+|+|.|+|.|.|..|.....+
T Consensus 1 Ge~~~L~C~~~~~~~~~~~~~W~~p~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~~~~~DsG~Y~C~a~n~~~~~~~~t 80 (86)
T cd05862 1 GEKLVLNCTARTELNVGIDFQWDYPGKKEQRAKSVSENRRSLQEHTELSSTLTIENVTLSDLGRYTCTASSGQMIAKNST 80 (86)
T ss_pred CCcEEEEEEEEeCCCCcEEEEEEcCCcccccceecccccccccccceeeeEEEEecCCcccCEEEEEEEeecceEecccE
Confidence 899999999987654 48899987764321 11 11111 124699999999999999999999999989999
Q ss_pred EEEEE
Q psy12061 74 RLIVL 78 (626)
Q Consensus 74 ~l~v~ 78 (626)
.|.|+
T Consensus 81 ~~~V~ 85 (86)
T cd05862 81 IVIVH 85 (86)
T ss_pred EEEEe
Confidence 99885
No 184
>cd05897 Ig2_IL1R2_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2). Ig2_IL1R2_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds the type II (IL1R2) represented in this group. Mature IL1R2 consists of three IG-like domains, a transmembrane domain, and a short cytoplasmic domain. It lacks the large cytoplasmic domain of Mature IL1R1, and does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.
Probab=99.20 E-value=7.7e-11 Score=86.71 Aligned_cols=68 Identities=21% Similarity=0.321 Sum_probs=54.2
Q ss_pred CCCCceEEEEeee-C----CCCCCeeEEEeCCEEccCCC-cEEEccC-CcEEEccCCCCCCEEEEEEEEcCCCCc
Q psy12061 2 AGEGGNVTIFCNP-E----AAPKPKFVWKKDGNIIGSGG-RRKIFEN-GNLLISPVSRDDSGIYSCTATNVHGMD 69 (626)
Q Consensus 2 ~~~G~~~~l~C~~-~----g~p~p~i~W~~~~~~i~~~~-~~~~~~~-g~L~i~~v~~~d~G~Y~C~a~n~~g~~ 69 (626)
+.+|.+..|.|.- . ..+.|+|.||||+.+|..+. +...+.+ +.|.|.+|..+|+|.|+|.|.+..|..
T Consensus 7 ~~~~~~~~l~Cp~~~~f~~~~~~~~v~WYKd~~~l~~~~~~~~~~~~~~~L~I~~v~~~D~G~YtC~~~~~~~g~ 81 (95)
T cd05897 7 LFTSTSGKLVCPDLSDFTINRTDVELQWYKDSVLLDKDNEKFYSLKGSTYLHIIDVSLNDSGYYTCKLQFTHEGK 81 (95)
T ss_pred eccccCcEEECCCHHHcccCCCCCcEEEccCCEECcCCCcceEecCCCCEEEEEEcChhhCEEEEEEEEEeeCCE
Confidence 4678999999973 2 34778999999999997544 3344333 479999999999999999999987663
No 185
>cd05872 Ig_Sema4B_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4B. Ig_Sema4B_like; Immunoglobulin (Ig)-like domain of Sema4B_like. Sema4B is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4B has extracellular Sema and Ig domains, a transmembrane domain and a short cytoplasmic domain. Sema4B has been shown to preferentially regulate the development of the postsynaptic specialization at the glutamatergic synapses. This cytoplasmic domain includes a PDZ-binding motif upon which the synaptic localization of Sem4B is dependent. Sema4B is a ligand of CLCP1, CLCP1 was identified in an expression profiling analysis, which compared a highly metastic lung cancer subline with its low metastic parental line. Sema4B was shown to promote CLCP1 endocytosis, and their interaction is a potential target for therapeutic intervention of metastasis.
Probab=99.19 E-value=8.7e-11 Score=84.24 Aligned_cols=67 Identities=24% Similarity=0.438 Sum_probs=57.0
Q ss_pred CCCCceEEEEeeeCCCCCCeeEEEeCCEEccCCCcEEEccCCcEEEccCCCCCCEEEEEEEEcCCCCcee
Q psy12061 2 AGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTATNVHGMDES 71 (626)
Q Consensus 2 ~~~G~~~~l~C~~~g~p~p~i~W~~~~~~i~~~~~~~~~~~g~L~i~~v~~~d~G~Y~C~a~n~~g~~~~ 71 (626)
|.+|+++.|.|...+. .+.+.|++||..|..++|+....+| |.|.+++.+|+|.|+|.+. ..|-...
T Consensus 8 v~~g~~v~L~C~~~s~-~A~v~W~~ng~~l~~~~r~~~~~~G-LlI~~~~~~dsG~Y~C~s~-E~gf~~~ 74 (85)
T cd05872 8 VAPGADVVLPCQLRSN-LASPVWLFNGTPLNAQFSYRVGTDG-LLILVTSPEHSGTYRCYSE-EEGFQQL 74 (85)
T ss_pred EecCCCEEEECCCCCC-CccEEEEECCcccCCCcceEEeCCC-CEEEECCHhhCEEEEEEEe-cCCCeEE
Confidence 5689999999999886 6699999999999888888888777 7799999999999999997 3344333
No 186
>cd05717 Ig1_Necl-1-3_like First (N-terminal) immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-3 (also known as cell adhesion molecules CADM3, CADM1, and CADM2 respectively). Ig1_Necl-1-3_like: N-terminal immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), and Necl-3 (CADM2). At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1, Necl-2, and Necl-3 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the form
Probab=99.19 E-value=1.1e-10 Score=88.27 Aligned_cols=75 Identities=23% Similarity=0.428 Sum_probs=56.1
Q ss_pred CCCCceEEEEeeeCCCCCCeeEEEeCCEE-c-------cCCCcEEEcc----CCcEEEccCCCCCCEEEEEEEEcCCCCc
Q psy12061 2 AGEGGNVTIFCNPEAAPKPKFVWKKDGNI-I-------GSGGRRKIFE----NGNLLISPVSRDDSGIYSCTATNVHGMD 69 (626)
Q Consensus 2 ~~~G~~~~l~C~~~g~p~p~i~W~~~~~~-i-------~~~~~~~~~~----~g~L~i~~v~~~d~G~Y~C~a~n~~g~~ 69 (626)
+.+|++++|.|.+.+.|.+.+.|++.+.. + ..+.|+.+.. +.+|.|.+++.+|+|.|.|.+.+.. ..
T Consensus 9 v~~G~~v~L~C~~~~~~~~~v~W~~p~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~~~-~~ 87 (95)
T cd05717 9 VVEGGTATLKCRVKNNDNSSLQWSNPNQQTLYFNDKRALRDNRIQLVNFSANELSISISNVSLSDEGRYTCSLYTMP-VQ 87 (95)
T ss_pred EcCCCCEEEEEEECCCCCceEEEeCCCCcEEEeccccccccCcEEEEcCCCCeeEEEEccCCcccCEEEEEEEecCC-Cc
Confidence 57899999999999988999999862221 1 1245666632 2369999999999999999999764 34
Q ss_pred eeeEEEEE
Q psy12061 70 ESKGRLIV 77 (626)
Q Consensus 70 ~~~~~l~v 77 (626)
.+.+.|.|
T Consensus 88 ~~~~~~~v 95 (95)
T cd05717 88 TAKATVTV 95 (95)
T ss_pred eEEEEEEC
Confidence 55566654
No 187
>cd05736 Ig2_Follistatin_like Second immunoglobulin (Ig)-like domain of a follistatin-like molecule encoded by the Mahya gene and similar proteins. Ig2_Follistatin_like: domain similar to the second immunoglobulin (Ig)-like domain found in a follistatin-like molecule encoded by the CNS-related Mahya gene. Mahya genes have been retained in certain Bilaterian branches during evolution. They are conserved in Hymenoptera and Deuterostomes, but are absent from other metazoan species such as fruit fly and nematode. Mahya proteins are secretory, with a follistatin-like domain (Kazal-type serine/threonine protease inhibitor domain and EF-hand calcium-binding domain), two Ig-like domains, and a novel C-terminal domain. Mahya may be involved in learning and memory and in processing of sensory information in Hymenoptera and vertebrates. Follistatin is a secreted, multidomain protein that binds activins with high affinity and antagonizes their signaling.
Probab=99.18 E-value=1.7e-10 Score=83.17 Aligned_cols=72 Identities=29% Similarity=0.555 Sum_probs=58.6
Q ss_pred EEEEEEecccCCcceeEEEeeCCEEeccccCCccCCCeeE--ecCCeEEEeecCCCCCEeEEEEEEeCCCceEEEEEEEE
Q psy12061 99 LQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNIN--IDGGLLEITNASFADAGEYECVVKSTVGKISTKTTVIV 176 (626)
Q Consensus 99 ~~l~C~~~~~p~p~~~i~W~~~~~~~~~~~~~~~~~~~~~--~~~~~l~i~~~~~~d~g~Y~C~a~n~~g~~~~~~~l~v 176 (626)
+.|.|.+.|.|.|. +.|+|++..+.... ..++. ..+..|.|.+++.+|.|.|+|.|.|..|..+..+.|.|
T Consensus 1 ~~L~C~v~g~P~p~--v~W~k~~~~l~~~~-----~~~~~~~~~~~~l~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~V 73 (76)
T cd05736 1 ASLRCHAEGIPLPR--LTWLKNGMDITPKL-----SKQLTLIANGSELHISNVRYEDTGAYTCIAKNEAGVDEDISSLFV 73 (76)
T ss_pred CEeEeEeeecCCCE--EEEEECCEECCCCC-----CccEEEeCCCCEEEECcCCcccCEEEEEEEEcCCCCcceEEEEEE
Confidence 46999999998874 58999999886432 12222 23457999999999999999999999999999999988
Q ss_pred e
Q psy12061 177 E 177 (626)
Q Consensus 177 ~ 177 (626)
.
T Consensus 74 ~ 74 (76)
T cd05736 74 E 74 (76)
T ss_pred E
Confidence 6
No 188
>cd04967 Ig1_Contactin First Ig domain of contactin. Ig1_Contactin: First Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 weeks postnata
Probab=99.17 E-value=3.3e-10 Score=84.87 Aligned_cols=82 Identities=29% Similarity=0.556 Sum_probs=61.3
Q ss_pred CceeeeCCCceEEec---CCcEEEEEEecccCCcceeEEEeeCCEEeccccCCccCCCeeEecCCeEEEeecCC-CCCEe
Q psy12061 81 PSYYEQLPPKITIAA---HRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEITNASF-ADAGE 156 (626)
Q Consensus 81 p~~~~~~~~~~~v~~---g~~~~l~C~~~~~p~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~-~d~g~ 156 (626)
|.+.. .|.+..+.+ |.+++|.|.+.+.|.| +|.|+|++..+.... ..++...++.|.|.++.. .|+|.
T Consensus 2 P~f~~-~p~~~~~~~~~~~~~~~l~C~~~g~p~p--~i~W~k~~~~l~~~~-----~~~~~~~~~~L~i~~~~~~~d~G~ 73 (91)
T cd04967 2 PVFEE-QPDDTIFPEESDEGKVSLNCRARGSPPP--TYRWLMNGTEIDDEP-----DSRYSLVGGNLVISNPSKAKDAGR 73 (91)
T ss_pred CeeEe-CCCCEEccCCCCCCEEEEEEeeeEcCCC--EEEEEECCEECCCCC-----CCCEEEECCEEEEecCCccCCCEE
Confidence 44444 355555443 4679999999999877 569999999884321 134556678999998874 89999
Q ss_pred EEEEEEeCCCceEE
Q psy12061 157 YECVVKSTVGKIST 170 (626)
Q Consensus 157 Y~C~a~n~~g~~~~ 170 (626)
|+|.|.|..|...+
T Consensus 74 Y~C~a~N~~G~~~S 87 (91)
T cd04967 74 YQCLASNIVGTVLS 87 (91)
T ss_pred EEEEEEcCCCEEEe
Confidence 99999999997644
No 189
>PF00041 fn3: Fibronectin type III domain; InterPro: IPR003961 Fibronectins are multi-domain glycoproteins found in a soluble form in plasma, and in an insoluble form in loose connective tissue and basement membranes []. They contain multiple copies of 3 repeat regions (types I, II and III), which bind to a variety of substances including heparin, collagen, DNA, actin, fibrin and fibronectin receptors on cell surfaces. The wide variety of these substances means that fibronectins are involved in a number of important functions: e.g., wound healing; cell adhesion; blood coagulation; cell differentiation and migration; maintenance of the cellular cytoskeleton; and tumour metastasis []. The role of fibronectin in cell differentiation is demonstrated by the marked reduction in the expression of its gene when neoplastic transformation occurs. Cell attachment has been found to be mediated by the binding of the tetrapeptide RGDS to integrins on the cell surface [], although related sequences can also display cell adhesion activity. Plasma fibronectin occurs as a dimer of 2 different subunits, linked together by 2 disulphide bonds near the C terminus. The difference in the 2 chains occurs in the type III repeat region and is caused by alternative splicing of the mRNA from one gene []. The observation that, in a given protein, an individual repeat of one of the 3 types (e.g., the first FnIII repeat) shows much less similarity to its subsequent tandem repeats within that protein than to its equivalent repeat between fibronectins from other species, has suggested that the repeating structure of fibronectin arose at an early stage of evolution. It also seems to suggest that the structure is subject to high selective pressure []. The fibronectin type III repeat region is an approximately 100 amino acid domain, different tandem repeats of which contain binding sites for DNA, heparin and the cell surface []. The superfamily of sequences believed to contain FnIII repeats represents 45 different families, the majority of which are involved in cell surface binding in some manner, or are receptor protein tyrosine kinases, or cytokine receptors.; GO: 0005515 protein binding; PDB: 1UEM_A 1TDQ_A 1X5I_A 2IC2_B 2IBG_C 2IBB_A 3R8Q_A 2FNB_A 1FNH_A 2EDB_A ....
Probab=99.17 E-value=2.4e-10 Score=85.04 Aligned_cols=84 Identities=30% Similarity=0.489 Sum_probs=67.5
Q ss_pred CCCceEEEeeecceEEEEeeeccccccccceeeEEEEEEEEecCCCccceEEEEecCccceEEEeCCccCceEEEEEEEe
Q psy12061 393 APQGVFSRGFNSTAINVTWNPIELIRENIRGRLIGHRIKYWKEDNPEETAVYYLSRTTRNWALIVGLQPDTKYYVKVMAY 472 (626)
Q Consensus 393 ~p~~~~~~~~~~~si~l~W~~~~~~~~~~~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~v~V~a~ 472 (626)
+|.++++...+.+++.|+|+++... ++.+.+|.|+|+........... ........+.+.+|+|++.|.|+|+|.
T Consensus 2 ~P~~l~v~~~~~~sv~v~W~~~~~~----~~~~~~y~v~~~~~~~~~~~~~~-~~~~~~~~~~i~~L~p~t~Y~~~v~a~ 76 (85)
T PF00041_consen 2 APENLSVSNISPTSVTVSWKPPSSG----NGPITGYRVEYRSVNSTSDWQEV-TVPGNETSYTITGLQPGTTYEFRVRAV 76 (85)
T ss_dssp SSEEEEEEEECSSEEEEEEEESSST----SSSESEEEEEEEETTSSSEEEEE-EEETTSSEEEEESCCTTSEEEEEEEEE
T ss_pred cCcCeEEEECCCCEEEEEEECCCCC----CCCeeEEEEEEEecccceeeeee-eeeeeeeeeeeccCCCCCEEEEEEEEE
Confidence 6889999999999999999998622 26699999999877776523232 333444579999999999999999999
Q ss_pred eCCCCCCCC
Q psy12061 473 NNAGEGPES 481 (626)
Q Consensus 473 ~~~g~s~~s 481 (626)
+..|.|++|
T Consensus 77 ~~~g~g~~S 85 (85)
T PF00041_consen 77 NSDGEGPPS 85 (85)
T ss_dssp ETTEEEEEE
T ss_pred eCCcCcCCC
Confidence 999987654
No 190
>cd05757 Ig2_IL1R_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins. Ig2_IL1R_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three IG-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta. This group also contains ILIR-like 1 (IL1
Probab=99.16 E-value=2.9e-10 Score=84.10 Aligned_cols=79 Identities=18% Similarity=0.220 Sum_probs=61.4
Q ss_pred ceEEecCCcEEEEEEecccCC---cceeEEEeeCCEEeccccCCccCCCeeEecCCeEEEeecCCCCCEeEEEEEEeCCC
Q psy12061 90 KITIAAHRNLQLRCSAHTEEL---LDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEITNASFADAGEYECVVKSTVG 166 (626)
Q Consensus 90 ~~~v~~g~~~~l~C~~~~~p~---p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~a~n~~g 166 (626)
...+.+|.++.|.|...+... |...+.|+||+.++.... .+. ..++.|.|.++..+|+|.|+|.+.|..|
T Consensus 4 ~~~~~~g~~~~l~Cp~~~~~~~~~~~p~i~Wyk~~~~i~~~~------~~~-~~~~~L~I~~v~~~DsG~YtC~~~n~~~ 76 (92)
T cd05757 4 KQILFSTKGGKIVCPDLDDFKNENTLPPVQWYKDCKLLEGDR------KRF-VKGSKLLIQNVTEEDAGNYTCKLTFTHN 76 (92)
T ss_pred eEEEeeccCCEEECCChHHccCCCCCCcEEEeECCEECCCCc------cEE-ecCCEEEEeeCChhhCEEEEEEEEecCC
Confidence 456889999999998765332 344679999999987542 222 2778999999999999999999999988
Q ss_pred ceEEEEEEE
Q psy12061 167 KISTKTTVI 175 (626)
Q Consensus 167 ~~~~~~~l~ 175 (626)
.....+...
T Consensus 77 ~~~~~~t~t 85 (92)
T cd05757 77 GKQYNVTRT 85 (92)
T ss_pred CEEEEEEEE
Confidence 776655444
No 191
>cd05882 Ig1_Necl-1 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). Ig1_Necl-1: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-1, Necl-1 (also known as celll adhesion molecule 3 (CADM3), SynCAM2, IGSF4). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the format
Probab=99.16 E-value=2.1e-10 Score=85.52 Aligned_cols=85 Identities=20% Similarity=0.380 Sum_probs=59.2
Q ss_pred CCceEEecCCcEEEEEEecccCCcceeEEEeeCCEEecc-ccCCccCCCeeEe-----cCCeEEEeecCCCCCEeEEEEE
Q psy12061 88 PPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGN-MDLNELETPNINI-----DGGLLEITNASFADAGEYECVV 161 (626)
Q Consensus 88 ~~~~~v~~g~~~~l~C~~~~~p~p~~~i~W~~~~~~~~~-~~~~~~~~~~~~~-----~~~~l~i~~~~~~d~g~Y~C~a 161 (626)
..+..+.+|+++.|.|.+.+.|.|. +.|++++..+.. .........|+.. ....|.|.+++.+|+|.|+|.+
T Consensus 4 ~~~~tv~~G~tv~L~C~v~g~~~~~--v~W~k~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~nV~~~D~G~YtC~~ 81 (95)
T cd05882 4 TQDETVAVGGTVTLKCGVKEHDNSS--LQWSNTAQQTLYFGEKRALRDNRIQLVKSTPTELIISISNVQLSDEGEYTCSI 81 (95)
T ss_pred cccEEEecCCcEEEEEEEeCCCCCe--EEEeccCccEEEeCCeEEEeCCeEEEEeCCCceEEEEECCCCcccCEEEEEEE
Confidence 4678999999999999999998775 589998764321 1111111234432 2468999999999999999999
Q ss_pred EeCCCceEEEEEEE
Q psy12061 162 KSTVGKISTKTTVI 175 (626)
Q Consensus 162 ~n~~g~~~~~~~l~ 175 (626)
.. .-..++.+.|.
T Consensus 82 ~t-~~~~~~~~~~~ 94 (95)
T cd05882 82 FT-MPVRTAKATVT 94 (95)
T ss_pred Ee-eccccEEEEEE
Confidence 87 33444444443
No 192
>KOG4258|consensus
Probab=99.15 E-value=1.3e-09 Score=107.37 Aligned_cols=291 Identities=16% Similarity=0.238 Sum_probs=176.1
Q ss_pred eEEEEEeccceEEEEecCCC-CCCcccEEEEEEeec--------------CCCCceEeecceeeeeeeccCCceeEEEEe
Q psy12061 186 VQVVEVHKTSATIQWTDGAT-NGRPITHYKIIARTN--------------WNSTWFNVSEHVIGKEVDRYTGRKEASIEN 250 (626)
Q Consensus 186 ~~~~~~~~~~~~l~W~~~~~-~~~~~~~y~v~~~~~--------------~~~~w~~~~~~~~~~~~~~~~~~~~~~i~~ 250 (626)
+.....+.+++.|+|..-.. +.....+|.+.|+.. +...|........ ....-.+........
T Consensus 494 ~~~~~~~~dsi~lrW~~~~~~d~r~llg~~~~yKEaP~qNvT~~dg~~aCg~~~W~~~~v~~~--~~~p~~~~~~~~~l~ 571 (1025)
T KOG4258|consen 494 FSSTVTSADSILLRWERYQPPDMRDLLGFLLHYKEAPFQNVTEEDGRDACGSNSWNVVDVDPP--DLIPNDGTHPGFLLD 571 (1025)
T ss_pred eeeEEeecceeEEEecccCCcchhhhheeeEeeccCCccccceecCccccccCcceEEeccCC--cCCCccccccceehh
Confidence 44456678999999985322 224467888887642 2245655443332 000001122233344
Q ss_pred eccCCceEEEEEEEecCC--ccCC-CCCCCCcccCCCCCCCCCCceeEeecCCcCeEEEEEeeCCCCCcccCcceEEEEE
Q psy12061 251 VLVPWSTYEFKVIAGNEL--GYGE-PSSPSPQYNTPADKPYQAPSRIGGGGGKIGDLSISWEPLPREKQNAPNIYYKIFW 327 (626)
Q Consensus 251 ~l~~~~~y~~~v~a~n~~--g~~~-~s~~~~~~~~~~~~p~~~p~~~~~~~~~~~~v~l~W~~~~~~~~~~~~~~y~i~~ 327 (626)
+|+|.+.|-|.|++.... +... .-+....++|.+..| .+|..+-....++..+.|+|++ |...++.+..|.|.|
T Consensus 572 ~LkP~TqYAvfVkT~t~t~~~~~~~A~S~I~YvqT~~~~P-spPl~~ls~snsSsqi~l~W~p--P~~pNG~lt~Ylv~w 648 (1025)
T KOG4258|consen 572 GLKPWTQYAVFVKTLTVTEAHEAYEAKSKIGYVQTLPDIP-SPPLDVLSKSNSSSQILLKWKP--PSQPNGNLTHYLVVW 648 (1025)
T ss_pred cCCccceeEEEEeeeehhhhccccccccceEEEEecCCCC-CCcchhhhccCcchheeEEecC--CCCCCCceeEEEEEE
Confidence 599999999999987332 2111 223344678888877 5666666666677899999998 778899999999988
Q ss_pred EecCCC------------------------cceeee--------------------------------------------
Q psy12061 328 RKKNDT------------------------EFQSET-------------------------------------------- 339 (626)
Q Consensus 328 ~~~~~~------------------------~~~~~~-------------------------------------------- 339 (626)
+..... .|+...
T Consensus 649 er~~~~~yl~~~nYC~~~~k~p~~~~~p~~~~ed~d~~~e~e~~~~~Cc~c~~~~~~~~~e~eea~~~~~FEd~L~n~i~ 728 (1025)
T KOG4258|consen 649 ERQAEDGYLEQRNYCHKGLKLPIRADLPSFDSEDMDPLLEMEGHTGPCCSCPPTESYPQYEDEEASEQKTFEDFLHNAIF 728 (1025)
T ss_pred EeccCCchHHHhccccccccccccccCCCCchhhcchhhhhccCCCCCCCCCcccccCchhhHHHHHHHHHhhhccceee
Confidence 765311 000000
Q ss_pred ee-----------e---------------------------------ecceeeEEEEeCCCcceeEEEEEEEEecCCCC-
Q psy12061 340 LK-----------E---------------------------------YGNVGIAVVRIPSEFYYTEYEVKVQAINDVGP- 374 (626)
Q Consensus 340 ~~-----------~---------------------------------~~~~~~~~~~~~~L~p~~~Y~~~v~a~n~~g~- 374 (626)
+. . ..+.....+.+.+|+..+.|.+.+.|.|..+.
T Consensus 729 vpr~~~~krk~l~~~~n~t~~~~~~~~~~p~t~~~t~p~ei~e~~p~~~n~n~~~~vi~~Lrh~tlY~i~l~aCnh~~~~ 808 (1025)
T KOG4258|consen 729 VPRRPDRKRKSLDDVENCTRLAPTRKAEEPTTPPTTAPTEIEEPKPRLENGNKESYVISGLRHFTLYRIDLQACNHATPK 808 (1025)
T ss_pred ecccCcccccccccccceeeccccccccCCCCCCCCCCccccccCcccccccchhhhhhccccchhhhhhHhhhcccccc
Confidence 00 0 00011223456788889999999999997764
Q ss_pred ---CCCCccEEEEccCCC-CCCCCCceEEEe-eecceEEEEeeeccccccccceeeEEEEEEEEecCCCccceE-EEEec
Q psy12061 375 ---GPESEVVTIFSAEDM-PQVAPQGVFSRG-FNSTAINVTWNPIELIRENIRGRLIGHRIKYWKEDNPEETAV-YYLSR 448 (626)
Q Consensus 375 ---~~~s~~~~~~t~~~~-p~~~p~~~~~~~-~~~~si~l~W~~~~~~~~~~~~~i~~Y~v~~~~~~~~~~~~~-~~~~~ 448 (626)
|.. ..+..+|.... ...-|..+.-.. ...+++.|+|.+|..++ |.|..|.|.|+.......... .....
T Consensus 809 ~~cS~a-~~v~~RT~~~~~aD~i~g~v~we~~~~~~~v~l~w~EP~~pN----Gli~~Y~Vk~r~~~~et~v~cvsR~~~ 883 (1025)
T KOG4258|consen 809 CGCSHA-AFVFARTMPTMGADDIPGPVTWECHIEMNSVILRWLEPKEPN----GLILNYEVKYRRNGDETHVECVSRMDY 883 (1025)
T ss_pred cccchh-hhhhhccccccccccCCCceeEecccCcceEEEecCCCCCCC----ccEEEEEEEEeeccCcchhhhhhhhhh
Confidence 332 22333443221 111222222222 37889999999987654 889999999986665432211 01111
Q ss_pred CccceEEEeCCccCceEEEEEEEeeCCCCCCCCccEEEe
Q psy12061 449 TTRNWALIVGLQPDTKYYVKVMAYNNAGEGPESERYLER 487 (626)
Q Consensus 449 ~~~~~~~i~~L~p~t~Y~v~V~a~~~~g~s~~s~~~~~~ 487 (626)
.......+..|.|| .|.++|+|..-+|.|++.++..+.
T Consensus 884 ~k~~gv~l~~l~~G-~y~~~vratSlaGng~~t~~~~~~ 921 (1025)
T KOG4258|consen 884 AKAGGVYLKRLNPG-NYSVRVRATSLAGNGSWTESVIFY 921 (1025)
T ss_pred hhcCceEEEecCCC-cEEEEEEEEeeccCCCCcCCcceE
Confidence 22234678888885 899999999999999887665543
No 193
>cd05898 Ig5_KIRREL3 Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2). Ig5_KIRREL3: the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1). These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development. Neph1 and 2 may mediate axonal guidance and synapse formation in certain areas of the CNS. In the kidney, they participate in the formation of the slit diaphragm.
Probab=99.15 E-value=5.6e-10 Score=82.86 Aligned_cols=82 Identities=13% Similarity=0.152 Sum_probs=63.4
Q ss_pred CCCceEEecCCcEEEEEEecccCCcceeEEEeeCCEEeccccCCccCCCeeEe--------cCCeEEEeecCCCC-CEeE
Q psy12061 87 LPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINI--------DGGLLEITNASFAD-AGEY 157 (626)
Q Consensus 87 ~~~~~~v~~g~~~~l~C~~~~~p~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~--------~~~~l~i~~~~~~d-~g~Y 157 (626)
......+..|++++|.|.+.+.|.|. .|.|..++..+.... ..++.+ ..+.|.|.++...| .|.|
T Consensus 7 ~~~s~~~~~G~~~~L~C~~~s~P~P~-~i~W~w~~~~i~~~~-----~~r~~I~~~~~~~g~~S~L~I~~~~~~d~~g~Y 80 (98)
T cd05898 7 SEQVQYAVRGERGKVKCFIGSTPPPD-RIAWAWKENVLESGT-----SERYTVERTSTGSGVLSTLTINNIMEADFQTHY 80 (98)
T ss_pred cCceEEEeCCCcEEEEEEEccCCCCc-EEEEEEccccccCCC-----CCCEEEEEEccCCCcEEEEEECCCccccCCcEE
Confidence 46778899999999999999888875 556776666665431 123332 34689999998877 7999
Q ss_pred EEEEEeCCCceEEEEEE
Q psy12061 158 ECVVKSTVGKISTKTTV 174 (626)
Q Consensus 158 ~C~a~n~~g~~~~~~~l 174 (626)
.|.|.|..|..+..+.|
T Consensus 81 ~C~a~N~~G~d~~~i~L 97 (98)
T cd05898 81 NCTAWNSFGSGTAIIQL 97 (98)
T ss_pred EEEEEeCCccceEEEEe
Confidence 99999999998887766
No 194
>cd05750 Ig_Pro_neuregulin Immunoglobulin (Ig)-like domain in neuregulins (NRGs). Ig_Pro_neuregulin: immunoglobulin (Ig)-like domain in neuregulins (NRGs). NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. There are four members of the neuregulin gene family (NRG1, -2, -3, and -4). The NRG-1 protein, binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. The other NRGs proteins bind one or the other or both of these ErbBs. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates processes such as target cell differentiation, and Schwann cell surv
Probab=99.15 E-value=1.3e-10 Score=83.76 Aligned_cols=71 Identities=28% Similarity=0.547 Sum_probs=53.8
Q ss_pred EEEEEEecc-cCCcceeEEEeeCCEEeccccCCccCCCeeE--ecCCeEEEeecCCCCCEeEEEEEEeCCCceEEEEE
Q psy12061 99 LQLRCSAHT-EELLDVAYIWTHNGVRIGNMDLNELETPNIN--IDGGLLEITNASFADAGEYECVVKSTVGKISTKTT 173 (626)
Q Consensus 99 ~~l~C~~~~-~p~p~~~i~W~~~~~~~~~~~~~~~~~~~~~--~~~~~l~i~~~~~~d~g~Y~C~a~n~~g~~~~~~~ 173 (626)
++|.|.+.+ .|.| ++.|+|+|.++....... ..++. ...+.|.|.++..+|+|.|+|.|.|..|..+.++.
T Consensus 1 ~~l~C~~~g~~P~p--~~~W~k~g~~l~~~~~~~--~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~ 74 (75)
T cd05750 1 LVLKCEATSEYPSL--RFKWFKDGKELNRKNKPR--NIKIRNKKKNSELQINKAKLADSGEYTCVVENILGNDTVTAN 74 (75)
T ss_pred CEEEEEccCCCCCc--eEEEEcCCeeccccCCcc--eEEEEecCceEEEEEccCCcccCeEEEEEEEEcCCceeEEEe
Confidence 479999999 8876 558999999887542100 00111 13468999999999999999999999999877765
No 195
>cd05862 Ig1_VEGFR First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R). IG1_VEGFR: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF_A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angioge
Probab=99.14 E-value=3.5e-10 Score=83.01 Aligned_cols=83 Identities=24% Similarity=0.331 Sum_probs=61.7
Q ss_pred CCcEEEEEEecccCCcceeEEEeeCCEEeccccCCcc---CCCeeEecCCeEEEeecCCCCCEeEEEEEEeCCCceEEEE
Q psy12061 96 HRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNEL---ETPNINIDGGLLEITNASFADAGEYECVVKSTVGKISTKT 172 (626)
Q Consensus 96 g~~~~l~C~~~~~p~p~~~i~W~~~~~~~~~~~~~~~---~~~~~~~~~~~l~i~~~~~~d~g~Y~C~a~n~~g~~~~~~ 172 (626)
|++++|.|.+.+.+.+.+.+.|.+.+........... .........+.|.|.+++.+|+|.|+|.|.|..|.....+
T Consensus 1 Ge~~~L~C~~~~~~~~~~~~~W~~p~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~~~~~DsG~Y~C~a~n~~~~~~~~t 80 (86)
T cd05862 1 GEKLVLNCTARTELNVGIDFQWDYPGKKEQRAKSVSENRRSLQEHTELSSTLTIENVTLSDLGRYTCTASSGQMIAKNST 80 (86)
T ss_pred CCcEEEEEEEEeCCCCcEEEEEEcCCcccccceecccccccccccceeeeEEEEecCCcccCEEEEEEEeecceEecccE
Confidence 7899999999998877788999987765422110000 0000112346899999999999999999999999999999
Q ss_pred EEEEeC
Q psy12061 173 TVIVEG 178 (626)
Q Consensus 173 ~l~v~~ 178 (626)
.|.|++
T Consensus 81 ~~~V~~ 86 (86)
T cd05862 81 IVIVHE 86 (86)
T ss_pred EEEEeC
Confidence 988863
No 196
>cd05734 Ig7_DSCAM Seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM). Ig7_DSCAM: the seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.
Probab=99.13 E-value=2.7e-10 Score=82.71 Aligned_cols=76 Identities=26% Similarity=0.335 Sum_probs=53.6
Q ss_pred EEEEEEecccCCcceeEEEeeCCEEeccccC-CccCCCeeE-ecCCeEEEeecCCCCCEeEEEEEEeCCCce-EEEEEEE
Q psy12061 99 LQLRCSAHTEELLDVAYIWTHNGVRIGNMDL-NELETPNIN-IDGGLLEITNASFADAGEYECVVKSTVGKI-STKTTVI 175 (626)
Q Consensus 99 ~~l~C~~~~~p~p~~~i~W~~~~~~~~~~~~-~~~~~~~~~-~~~~~l~i~~~~~~d~g~Y~C~a~n~~g~~-~~~~~l~ 175 (626)
++|.|.+.|.|.|. +.|+|++........ ......++. ..++.|.|.+++.+|+|.|+|.|.|..|.. +..+.|.
T Consensus 1 v~l~C~~~G~P~P~--v~W~~~~~~~~~~~~~~~~~~~r~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~s~~~~l~ 78 (79)
T cd05734 1 VTLNCSAEGYPPPT--IVWKHSKGRGHPQHTHTCCLAGRIQLLSNGSLLIKHVLEEDSGYYLCKVSNDVGADASKSMVLT 78 (79)
T ss_pred CEeEeeCeEeCCCE--EEEEECCCccccccccccccCCCEEEecCCeEEECcCCcccCEEEEEEEEeCCCCCCceEEEEe
Confidence 57999999999885 589997443221110 000123443 356899999999999999999999999976 5566654
Q ss_pred E
Q psy12061 176 V 176 (626)
Q Consensus 176 v 176 (626)
|
T Consensus 79 ~ 79 (79)
T cd05734 79 V 79 (79)
T ss_pred C
Confidence 3
No 197
>cd05733 Ig6_L1-CAM_like Sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins. Ig6_L1-CAM_like: domain similar to the sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains NrCAM [Ng(neuronglia)CAM-related cell adhesion molecule], which is primarily expressed in the nervous system, and human neurofascin.
Probab=99.13 E-value=2.9e-10 Score=81.81 Aligned_cols=65 Identities=26% Similarity=0.545 Sum_probs=50.7
Q ss_pred EEEEEEecccCCcceeEEEeeCCEEeccccCCccCCCeeE--ecCCeEEEeecCC----CCCEeEEEEEEeCCCceEE
Q psy12061 99 LQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNIN--IDGGLLEITNASF----ADAGEYECVVKSTVGKIST 170 (626)
Q Consensus 99 ~~l~C~~~~~p~p~~~i~W~~~~~~~~~~~~~~~~~~~~~--~~~~~l~i~~~~~----~d~g~Y~C~a~n~~g~~~~ 170 (626)
++|.|.+.|.|.|. |+|+|||..+.... ..++. ...+.|.|.++.. +|+|.|+|.|.|..|...+
T Consensus 1 i~l~C~~~G~P~P~--v~W~k~g~~l~~~~-----~~~~~~~~~~g~L~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~s 71 (77)
T cd05733 1 IVIKCEAKGNPPPT--FSWTRNGTHFDPEK-----DPRVTMKPDSGTLVIDNMNGGRAEDYEGEYQCYASNELGTAIS 71 (77)
T ss_pred CEEEeeCcccCCCe--EEEEECCeECCCCC-----CCCEEEeCCCCEEEEeccCCCCCcCCCEEEEEEEEcCCCcEEc
Confidence 47999999999884 58999999885432 12332 3578999999854 6899999999999997643
No 198
>KOG3515|consensus
Probab=99.13 E-value=1.2e-08 Score=102.10 Aligned_cols=174 Identities=14% Similarity=0.190 Sum_probs=110.6
Q ss_pred CCCceEEEEeeeC-CCCCCeeEEEeCCEEccCCCcEEEccCC-----cEEEccCCCCCCEEEEEEEEcCCCCceeeEEEE
Q psy12061 3 GEGGNVTIFCNPE-AAPKPKFVWKKDGNIIGSGGRRKIFENG-----NLLISPVSRDDSGIYSCTATNVHGMDESKGRLI 76 (626)
Q Consensus 3 ~~G~~~~l~C~~~-g~p~p~i~W~~~~~~i~~~~~~~~~~~g-----~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~ 76 (626)
.+|+.+.|.|.+. |+|.++++|+++..++...+......+| ++.+..-..++.-.-.|.|.| .......+.
T Consensus 219 ~~g~~inlvc~~~gg~P~~~~~w~~~s~~~~~~sl~~~~~sg~~v~~~~~~~~~r~~~~~~~kc~a~n---~~~~~~~ta 295 (741)
T KOG3515|consen 219 TEGQTINLVCNAQGGNPSQQQTWYKDSRPQSESSLLSQEPSGDTVSSTLVLRVGRQDLQAQLKCKASN---LLAASQITA 295 (741)
T ss_pred cccceEEEEehhhcCCcchhhhhccccccchhhhcccCCCCCCcccccccccccccchhhhhhccccC---ccccceeee
Confidence 5899999999884 4699999999998877543111111122 344444444555667799998 333445556
Q ss_pred EEeCCceeeeCCCceEEecCCcEEEEEEecccCCcceeEEEeeCCEEeccc-cCCccCCCeeEecCCeEEEeecCCCCCE
Q psy12061 77 VLHGPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNM-DLNELETPNINIDGGLLEITNASFADAG 155 (626)
Q Consensus 77 v~~~p~~~~~~~~~~~v~~g~~~~l~C~~~~~p~p~~~i~W~~~~~~~~~~-~~~~~~~~~~~~~~~~l~i~~~~~~d~g 155 (626)
|..+|......+....+..|++..+.|...+..+ ...+.|+++....... ...........+....+.+......|.|
T Consensus 296 v~~~~~~~~Ist~~~~ls~g~s~r~~c~~sss~p-~~~i~w~~~~~~~~~~~~~~~~t~~~~~v~~~~~~~q~~~~~~~g 374 (741)
T KOG3515|consen 296 VQVKPTAVPISTSDSGLSSGRSARSSCVSSSSKP-PAHIAWYKDTKMPKGSQKASSKTSNMGGVAVISHYAQPSSQQDGG 374 (741)
T ss_pred cccccccccccCcccccccccccccceeccCCCC-ccceeeeccCcccccccCcccCCCcccceeeEEeeecccchhcCc
Confidence 6566666555666777899999999998776543 3477999976655433 1111111111122234555667888999
Q ss_pred eEEEEEEeCCCceEEEEEEEEeCCC
Q psy12061 156 EYECVVKSTVGKISTKTTVIVEGPP 180 (626)
Q Consensus 156 ~Y~C~a~n~~g~~~~~~~l~v~~~P 180 (626)
.|+|.+.+.....+.+....+...|
T Consensus 375 ~v~c~a~~~~~~~~sss~~~l~~l~ 399 (741)
T KOG3515|consen 375 QVTCPADNLELAHSSSSSFLLPVLP 399 (741)
T ss_pred eEEccccccccccccccceeccccC
Confidence 9999999887665555555544433
No 199
>cd04979 Ig_Semaphorin_C Immunoglobulin (Ig)-like domain of semaphorin. Ig_Semaphorin_C; Immunoglobulin (Ig)-like domain in semaphorins. Semaphorins are transmembrane protein that have important roles in a variety of tissues. Functionally, semaphorins were initially characterized for their importance in the development of the nervous system and in axonal guidance. Later they have been found to be important for the formation and functioning of the cardiovascular, endocrine, gastrointestinal, hepatic, immune, musculoskeletal, renal, reproductive, and respiratory systems. Semaphorins function through binding to their receptors and transmembrane semaphorins also serves as receptors themselves. Although molecular mechanism of semaphorins is poorly understood, the Ig-like domains may involve in ligand binding or dimerization.
Probab=99.12 E-value=5.8e-10 Score=83.18 Aligned_cols=85 Identities=20% Similarity=0.279 Sum_probs=64.9
Q ss_pred CCCceEEecCCcEEEEEEecccCCcceeEEEeeCCEEeccccCCccCCCeeEecCCeEEEeecCCCCCEeEEEEEEeCC-
Q psy12061 87 LPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEITNASFADAGEYECVVKSTV- 165 (626)
Q Consensus 87 ~~~~~~v~~g~~~~l~C~~~~~p~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~a~n~~- 165 (626)
+|..+.+.+|+++.|.|.+.+ |.+ ++.|+|++..+..... ...++....+.|.|.+++.+|+|.|+|.|.+..
T Consensus 2 ~~~~~~v~~g~~v~L~C~~~~-p~~--~i~W~k~~~~~~~~~~---~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~~~~~ 75 (89)
T cd04979 2 EEKVVTVVEGNSVFLECSPKS-NLA--SVVWLFQGGPLQRKEE---PEERLLVTEDGLLIRSVSPADAGVYTCQSVEHGF 75 (89)
T ss_pred cceEEEEECCCcEEEEEeCCC-CCc--eEEEEECCcccccccC---cCceEEEcCCCEEEccCCHHHCEEEEEEEecCcc
Confidence 456778999999999999877 544 5699999987754321 123455556779999999999999999998754
Q ss_pred CceEEEEEEEEe
Q psy12061 166 GKISTKTTVIVE 177 (626)
Q Consensus 166 g~~~~~~~l~v~ 177 (626)
+..+.+..|.|.
T Consensus 76 ~~~~~~~~l~V~ 87 (89)
T cd04979 76 KQTLATYSLNVL 87 (89)
T ss_pred ceeEeEEEEEEe
Confidence 456777777765
No 200
>cd05874 Ig6_NrCAM Sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule). Ig6_NrCAM: sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and an intracellular domain. NrCAM is primarily expressed in the nervous system.
Probab=99.11 E-value=4.9e-10 Score=80.31 Aligned_cols=67 Identities=19% Similarity=0.368 Sum_probs=50.0
Q ss_pred EEEEEEecccCCcceeEEEeeCCEEeccccCCccCCCeeEecCCeEEEeecCCC----CCEeEEEEEEeCCCceEE
Q psy12061 99 LQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEITNASFA----DAGEYECVVKSTVGKIST 170 (626)
Q Consensus 99 ~~l~C~~~~~p~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~----d~g~Y~C~a~n~~g~~~~ 170 (626)
+.|.|.+.|.|.|. |+|+|||.++..... ....+...++.|.|..+... |.|.|+|.|.|..|...+
T Consensus 1 ~~l~C~a~G~P~P~--i~W~k~g~~l~~~~~---~~~~~~~~~g~l~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~s 71 (77)
T cd05874 1 IVIQCEAKGKPPPS--FSWTRNGTHFDIDKD---PKVTMKPNTGTLVINIMNGEKAEAYEGVYQCTARNERGAAVS 71 (77)
T ss_pred CEEEeeCcccCCCe--EEEEECCeECCCcCC---CCEEEeCCCceEEEeccccCCCCCCCEEEEEEEEcCCCeEEe
Confidence 47999999999885 589999998753211 01122335788999888643 789999999999998654
No 201
>PF00047 ig: Immunoglobulin domain The Prosite family only concerns antibodies and MHCs.; InterPro: IPR013151 Members of the immunoglobulin superfamily are found in hundreds of proteins of different functions. Examples include antibodies, the giant muscle kinase titin and receptor tyrosine kinases. Immunoglobulin-like domains may be involved in protein-protein and protein-ligand interactions. The Pfam alignments do not include the first and last strand of the immunoglobulin-like domain.; PDB: 1B6U_A 3O4O_C 3VH8_H 1BIH_A 2C9A_A 2V5Y_A 1BQH_K 2ATP_A 3B9K_A 1NEZ_H ....
Probab=99.11 E-value=1.2e-10 Score=80.78 Aligned_cols=58 Identities=33% Similarity=0.647 Sum_probs=47.4
Q ss_pred CceEEEEeee-CCCCCCeeEEEeCCEEccCCCcEEEccCCc-----EEEccCCCCCCEEEEEEE
Q psy12061 5 GGNVTIFCNP-EAAPKPKFVWKKDGNIIGSGGRRKIFENGN-----LLISPVSRDDSGIYSCTA 62 (626)
Q Consensus 5 G~~~~l~C~~-~g~p~p~i~W~~~~~~i~~~~~~~~~~~g~-----L~i~~v~~~d~G~Y~C~a 62 (626)
|++++|.|.+ .+.+.+.+.|+|++..+..........++. |.|.+++.+|+|.|+|.|
T Consensus 1 G~~v~L~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~v 64 (64)
T PF00047_consen 1 GSSVTLTCSVSSGPPPTTVTWSKNGQSLPEGSTTNRSTNSVSSTSRLTISNVTPEDSGTYTCVV 64 (64)
T ss_dssp TSEEEEEEEEEESSSTSEEEEEETTTTTSEEEEEEEEETTTEEEEEEEESSCTGGGTEEEEEEE
T ss_pred CCeEEEEeecCCCCCCcEEEEEECCccccCcceeEeecccceeeeEEEEccCCHHHCEEEEEEC
Confidence 8999999999 777888999999998775544444433332 999999999999999987
No 202
>cd07690 Ig1_CD4 First immunoglobulin (Ig) domain of CD4. Ig1_CD4; first immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy.
Probab=99.11 E-value=2.4e-10 Score=84.41 Aligned_cols=67 Identities=21% Similarity=0.403 Sum_probs=51.1
Q ss_pred CCCCceEEEEeeeCCCCCCeeEEEeCCEEcc--------------CCCcEEEc----cCC--cEEEccCCCCCCEEEEEE
Q psy12061 2 AGEGGNVTIFCNPEAAPKPKFVWKKDGNIIG--------------SGGRRKIF----ENG--NLLISPVSRDDSGIYSCT 61 (626)
Q Consensus 2 ~~~G~~~~l~C~~~g~p~p~i~W~~~~~~i~--------------~~~~~~~~----~~g--~L~i~~v~~~d~G~Y~C~ 61 (626)
|.+|++|+|.|.+.+.+.+.|.|++++.... ..+|..+. .+| +|.|.+++.+|+|.|.|.
T Consensus 4 ~~~G~~VtL~C~~s~~~~~~i~W~~~~~k~~~g~~~~l~~~~~~~~~~r~~~~~~~~~~g~~~L~I~~l~~sDsgtY~C~ 83 (94)
T cd07690 4 GKKGDTAELPCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRNLWDQGSFPLIIKNLKIEDSDTYICE 83 (94)
T ss_pred eeCCCCEEEEEEeCCCCCcEEEEEECCcEEccCcCCEEEEecccccCCCCceecccCCCCeEEEEECCCCHHHCEEEEEE
Confidence 5789999999999999999999998763321 11222222 223 499999999999999999
Q ss_pred EEcCCCC
Q psy12061 62 ATNVHGM 68 (626)
Q Consensus 62 a~n~~g~ 68 (626)
+.|..++
T Consensus 84 v~~~~~~ 90 (94)
T cd07690 84 VEDKKEE 90 (94)
T ss_pred ECCccce
Confidence 9987654
No 203
>cd05875 Ig6_hNeurofascin_like Sixth immunoglobulin (Ig)-like domain of human neurofascin (NF). Ig6_hNeurofascin_like: the sixth immunoglobulin (Ig)-like domain of human neurofascin (NF). NF belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and a cytoplasmic domain. NF has many alternatively spliced isoforms having different temporal expression patterns during development. NF participates in axon subcellular targeting and synapse formation, however little is known of the functions of the different isoforms.
Probab=99.09 E-value=8.4e-10 Score=79.10 Aligned_cols=65 Identities=23% Similarity=0.495 Sum_probs=49.2
Q ss_pred EEEEEEecccCCcceeEEEeeCCEEeccccCCccCCCeeE--ecCCeEEEeecCC----CCCEeEEEEEEeCCCceEE
Q psy12061 99 LQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNIN--IDGGLLEITNASF----ADAGEYECVVKSTVGKIST 170 (626)
Q Consensus 99 ~~l~C~~~~~p~p~~~i~W~~~~~~~~~~~~~~~~~~~~~--~~~~~l~i~~~~~----~d~g~Y~C~a~n~~g~~~~ 170 (626)
+.|.|.+.|.|.|. ++|+|+|..+.... ..++. ..++.|.|.++.. .|+|.|+|.|.|..|...+
T Consensus 1 ~~l~C~~~G~P~P~--v~W~k~g~~~~~~~-----~~~~~~~~~~~~L~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~s 71 (77)
T cd05875 1 IIIECEAKGNPVPT--FQWTRNGKFFNVAK-----DPRVSMRRRSGTLVIDFSGGGRPEDYEGEYQCFARNNLGTALS 71 (77)
T ss_pred CEEEEeccccCCCE--EEEEECCEEccCcC-----CCcEEEeCCCceEEEeccCCCCCCCCCEEEEEEEEeccceEEE
Confidence 47999999999885 58999998774321 12333 3578999998742 4699999999999997644
No 204
>smart00409 IG Immunoglobulin.
Probab=99.09 E-value=1e-09 Score=81.88 Aligned_cols=76 Identities=37% Similarity=0.675 Sum_probs=65.1
Q ss_pred CCCCceEEEEeeeCCCCCCeeEEEeC-CEEccCCCcEEEccC---CcEEEccCCCCCCEEEEEEEEcCCCCceeeEEEEE
Q psy12061 2 AGEGGNVTIFCNPEAAPKPKFVWKKD-GNIIGSGGRRKIFEN---GNLLISPVSRDDSGIYSCTATNVHGMDESKGRLIV 77 (626)
Q Consensus 2 ~~~G~~~~l~C~~~g~p~p~i~W~~~-~~~i~~~~~~~~~~~---g~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~v 77 (626)
+.+|+++.|.|.+.+.+.+.+.|+++ +..+....++.+... .+|.|.++..+|+|.|.|.+.+..+.....+.|.|
T Consensus 6 ~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~v~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~v~~~~~~~~~~~~l~V 85 (86)
T smart00409 6 VKEGESVTLSCEVSGSPPPEVTWYKQGGKLLAESGRFSVSRSGSNSTLTISNVTPEDSGTYTCAATNSSGSASSTTTLTV 85 (86)
T ss_pred EeCCCeEEEEEEEccCCCCeEEEEECCCEEcCCCCcEEEEEcCCeeEEEEEeeccccCeEEEEEEEcCCCeEEEEEEEEE
Confidence 56899999999999988889999998 888876667676655 47999999999999999999988888777676665
No 205
>smart00410 IG_like Immunoglobulin like. IG domains that cannot be classified into one of IGv1, IGc1, IGc2, IG.
Probab=99.09 E-value=1e-09 Score=81.88 Aligned_cols=76 Identities=37% Similarity=0.675 Sum_probs=65.1
Q ss_pred CCCCceEEEEeeeCCCCCCeeEEEeC-CEEccCCCcEEEccC---CcEEEccCCCCCCEEEEEEEEcCCCCceeeEEEEE
Q psy12061 2 AGEGGNVTIFCNPEAAPKPKFVWKKD-GNIIGSGGRRKIFEN---GNLLISPVSRDDSGIYSCTATNVHGMDESKGRLIV 77 (626)
Q Consensus 2 ~~~G~~~~l~C~~~g~p~p~i~W~~~-~~~i~~~~~~~~~~~---g~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~v 77 (626)
+.+|+++.|.|.+.+.+.+.+.|+++ +..+....++.+... .+|.|.++..+|+|.|.|.+.+..+.....+.|.|
T Consensus 6 ~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~v~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~v~~~~~~~~~~~~l~V 85 (86)
T smart00410 6 VKEGESVTLSCEVSGSPPPEVTWYKQGGKLLAESGRFSVSRSGSNSTLTISNVTPEDSGTYTCAATNSSGSASSTTTLTV 85 (86)
T ss_pred EeCCCeEEEEEEEccCCCCeEEEEECCCEEcCCCCcEEEEEcCCeeEEEEEeeccccCeEEEEEEEcCCCeEEEEEEEEE
Confidence 56899999999999988889999998 888876667676655 47999999999999999999988888777676665
No 206
>cd07701 Ig1_Necl-3 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Ig1_Necl-3: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-3, Necl-3 (also known as cell adhesion molecule 2 (CADM2), SynCAM2, IGSF4D). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-3 accumulates in central and peripheral nervous system tissue, and has been shown to selectively interact with oligodendrocytes.
Probab=99.08 E-value=1.2e-09 Score=81.94 Aligned_cols=87 Identities=18% Similarity=0.342 Sum_probs=60.0
Q ss_pred CCCceEEecCCcEEEEEEecccCCcceeEEEeeCCEEec-cccCCccCCCeeEe-----cCCeEEEeecCCCCCEeEEEE
Q psy12061 87 LPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIG-NMDLNELETPNINI-----DGGLLEITNASFADAGEYECV 160 (626)
Q Consensus 87 ~~~~~~v~~g~~~~l~C~~~~~p~p~~~i~W~~~~~~~~-~~~~~~~~~~~~~~-----~~~~l~i~~~~~~d~g~Y~C~ 160 (626)
.++++.+.+|++++|.|.+.+.|.+. +.|++.+..+. ..+.......|+.. ....|+|.+++.+|+|.|+|.
T Consensus 3 ~~~~v~v~eG~~v~L~C~~~~~p~~~--v~W~~~~~~~l~~~~~~~~~~~r~~~~~~~~~~~sL~I~~v~~~DsG~Y~C~ 80 (95)
T cd07701 3 LTQNVTVVEGGTANLTCRVDQNDNTS--LQWSNPAQQTLYFDDKKALRDNRIELVRASWHELSISISDVSLSDEGQYTCS 80 (95)
T ss_pred ccceEEEecCCcEEEEEEEecCCceE--EEEeCCCCeEEEEcCcccccCCCEEEEECCCCcEEEEECcCCcccCEEEEEE
Confidence 36788999999999999999998765 58986433211 01100111234432 335899999999999999999
Q ss_pred EEeCCCceEEEEEEEE
Q psy12061 161 VKSTVGKISTKTTVIV 176 (626)
Q Consensus 161 a~n~~g~~~~~~~l~v 176 (626)
+.+. ...+..+.|.|
T Consensus 81 ~~t~-~~~~~~~~l~v 95 (95)
T cd07701 81 LFTM-PVKTSKAYLTV 95 (95)
T ss_pred eEee-cCccEEEEEEC
Confidence 9984 33466666654
No 207
>cd05895 Ig_Pro_neuregulin-1 Immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1. Ig_Pro_neuregulin-1: immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1. There are many NRG-1 isoforms which arise from the alternative splicing of mRNA. NRG-1 belongs to the neuregulin gene family, which is comprised of four genes. This group represents NRG-1. NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, and heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. The NRG-1 protein binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates process
Probab=99.08 E-value=6.8e-10 Score=79.93 Aligned_cols=71 Identities=37% Similarity=0.639 Sum_probs=52.0
Q ss_pred EEEEEEecccCCcceeEEEeeCCEEeccccCCccCCCeeEe----cCCeEEEeecCCCCCEeEEEEEEeCCCceEEEEE
Q psy12061 99 LQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINI----DGGLLEITNASFADAGEYECVVKSTVGKISTKTT 173 (626)
Q Consensus 99 ~~l~C~~~~~p~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~----~~~~l~i~~~~~~d~g~Y~C~a~n~~g~~~~~~~ 173 (626)
+.|.|.+.+.+ |.+.+.|+|+|..+..... ...++.. ..+.|.|.+++.+|+|.|+|.|.|..|..+.++.
T Consensus 1 ~~L~C~a~~~~-p~~~~~W~~~g~~i~~~~~---~~~~~~~~~~~~~~~L~I~~~~~~DsG~Y~C~a~N~~g~~~~~~~ 75 (76)
T cd05895 1 LVLRCETVSEY-PSLRFKWFKNGKEIGAKNK---PDNKIKIRKKKKSSELQISKASLADNGEYKCMVSSKLGNDSVTAN 75 (76)
T ss_pred CEEEEecccCC-CCCceEEEECCcccccCCC---CCceEEEEeCCcEEEEEECcCCcccCEEEEEEEEeCCCceeEEEe
Confidence 47999987542 2346799999998864321 0122221 3468999999999999999999999998877765
No 208
>cd05753 Ig2_FcgammaR_like Second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins. Ig2_FcgammaR_like: domain similar to the second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.
Probab=99.05 E-value=9.5e-10 Score=80.09 Aligned_cols=67 Identities=18% Similarity=0.230 Sum_probs=53.0
Q ss_pred ceEEecCCcEEEEEEecccCCcceeEEEeeCCEEeccccCCccCCCeeEecCCeEEEeecCCCCCEeEEEEEEeCCCce
Q psy12061 90 KITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEITNASFADAGEYECVVKSTVGKI 168 (626)
Q Consensus 90 ~~~v~~g~~~~l~C~~~~~p~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~a~n~~g~~ 168 (626)
...+.+|++++|.|.+..... ...+.|+|+|..+... .....|.|.+++.+|+|.|+|.+.+..|..
T Consensus 8 ~~~V~~G~~vtL~C~~~~~~~-~~~~~w~k~g~~~~~~-----------~~~~~l~I~~~~~~dsG~Y~C~~~~~~~~~ 74 (83)
T cd05753 8 SRVVFEGEPLVLRCHGWKNKP-VYKVTYYRDGKAKKYS-----------HSNSNLSIPQATLSDSGSYHCSGIIGSYDY 74 (83)
T ss_pred cceecCCCCEEEEeeCCCCCc-ceEEEEEECCeEcccc-----------CCCceEEECccCHHHCEEEEEEEEeCCcee
Confidence 447899999999999864332 2467999999876421 135689999999999999999999998854
No 209
>cd05885 Ig2_Necl-4 Second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4)). Ig2_Necl-4: second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1-Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Ig domains are likely to participate in ligand binding and recognition. Necl-4 is expressed on Schwann cells, and plays a key part in initiating peripheral nervous system (PNS) myelination. In injured peripheral nerve cells, the mRNA signal for both Necl-4 and Necl-5 was observed to be elevated. Necl-4 participates in cell-cell adhesion and is proposed to play a role in tumor suppression.
Probab=99.05 E-value=8.9e-10 Score=77.78 Aligned_cols=63 Identities=17% Similarity=0.326 Sum_probs=48.9
Q ss_pred eEEEEeeeCC-CCCCeeEEEeCCEEccCCCc-----EEEccCCcEEEccCCCCCCEEEEEEEEcCCCCc
Q psy12061 7 NVTIFCNPEA-APKPKFVWKKDGNIIGSGGR-----RKIFENGNLLISPVSRDDSGIYSCTATNVHGMD 69 (626)
Q Consensus 7 ~~~l~C~~~g-~p~p~i~W~~~~~~i~~~~~-----~~~~~~g~L~i~~v~~~d~G~Y~C~a~n~~g~~ 69 (626)
.+.|+|...+ .|+++|.||||+++|..... ......++|.|.....+|.+.|.|.|.|..+..
T Consensus 1 ~~~L~C~s~~skP~a~i~W~k~~~~l~~~~~~~~~~~~~t~~s~L~~~~~~~Ddg~~~~C~A~n~a~~~ 69 (80)
T cd05885 1 EVELTCLSPRSKPAATLRWYRDRKELKGVISQQENGKTVSVSNTIRFPVDRKDDGAILSCEASHPALVS 69 (80)
T ss_pred CEEEEEeCCCccCCCeEEEEECCEECCCCcccccCCceEEEEEEEEEEeeeccCCcEEEEEEEChhhCC
Confidence 4789999955 59999999999999964211 111123469999999999999999999988764
No 210
>cd05774 Ig_CEACAM_D1 First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM). IG_CEACAM_D1: immunoglobulin (Ig)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the D
Probab=99.04 E-value=1.5e-09 Score=82.19 Aligned_cols=67 Identities=28% Similarity=0.526 Sum_probs=53.8
Q ss_pred CCCCceEEEEeeeCCCCCCeeEEEeCCE-----Ec--------------cCCCcEEEccCCcEEEccCCCCCCEEEEEEE
Q psy12061 2 AGEGGNVTIFCNPEAAPKPKFVWKKDGN-----II--------------GSGGRRKIFENGNLLISPVSRDDSGIYSCTA 62 (626)
Q Consensus 2 ~~~G~~~~l~C~~~g~p~p~i~W~~~~~-----~i--------------~~~~~~~~~~~g~L~i~~v~~~d~G~Y~C~a 62 (626)
|.+|++|.|.|.....+...+.|+|+.. .| .-.+|..+..+|+|.|.+++.+|+|.|.|.+
T Consensus 10 ~~~G~~V~L~v~~~p~~~~~~~W~kg~~~~~~~~I~~y~~~~~~~~~gp~~~gR~~~~~ngSL~I~~v~~~D~G~Y~~~v 89 (105)
T cd05774 10 VAEGENVLLLVHNLPENLLAYAWYKGKTVSPNFLIASYIISTNSSTPGPAYSGRETIYPNGSLLIQNVTQKDTGFYTLQT 89 (105)
T ss_pred ccCCCCEEEEecCCCCCceEEEEEcCCCCCCCEEEEEEECCCcccccCcccCCcEEEeCCCcEEEecCCcccCEEEEEEE
Confidence 6789999999977554445999999621 22 0247888889999999999999999999999
Q ss_pred EcCCCC
Q psy12061 63 TNVHGM 68 (626)
Q Consensus 63 ~n~~g~ 68 (626)
.+....
T Consensus 90 ~~~~~~ 95 (105)
T cd05774 90 ITTNFQ 95 (105)
T ss_pred EeCCcc
Confidence 988743
No 211
>cd05729 Ig2_FGFR_like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor and similar proteins. Ig2_FGFR_like: domain similar to the second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three Ig-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin
Probab=99.03 E-value=2e-09 Score=80.02 Aligned_cols=82 Identities=20% Similarity=0.316 Sum_probs=61.9
Q ss_pred eEEecCCcEEEEEEecccCCcceeEEEeeCCEEeccccCCccCCCeeEecCCeEEEeecCCCCCEeEEEEEEeCCCceEE
Q psy12061 91 ITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEITNASFADAGEYECVVKSTVGKIST 170 (626)
Q Consensus 91 ~~v~~g~~~~l~C~~~~~p~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~a~n~~g~~~~ 170 (626)
..+..|++++|.|.+.+.|.+ .+.|++++..+........ .........|.|.++..+|.|.|+|.+.|..|..+.
T Consensus 4 ~~~~~G~~~~l~C~~~~~p~~--~v~W~k~~~~~~~~~~~~~--~~~~~~~~~l~i~~~~~~d~g~Y~C~~~n~~g~~~~ 79 (85)
T cd05729 4 HAVPAGSTVRLKCPASGNPRP--TITWLKDGKPFKKEHRIGG--YKVRKKKWTLILESVVPSDSGKYTCIVENKYGSINH 79 (85)
T ss_pred eEecCCCcEEEEEEcCCCCCC--eEEEEECCEECcccCceeE--EEccCcEEEEEEeECCcccCEEEEEEEEECCceEEE
Confidence 456789999999999998876 4599999988764321000 011112347999999999999999999999999888
Q ss_pred EEEEEE
Q psy12061 171 KTTVIV 176 (626)
Q Consensus 171 ~~~l~v 176 (626)
++.|.|
T Consensus 80 ~~~l~v 85 (85)
T cd05729 80 TYKVDV 85 (85)
T ss_pred EEEEeC
Confidence 877763
No 212
>cd05896 Ig1_IL1RAPL-1_like First immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1). Ig1_ IL1RAPL-1_like: domain similar to the first immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1). IL-1 alpha and IL-1 beta are cytokines which participates in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of
Probab=99.02 E-value=1.3e-09 Score=80.03 Aligned_cols=76 Identities=21% Similarity=0.268 Sum_probs=55.7
Q ss_pred CCCCceEEEEeeeC-----------CCCCCeeEEEeCCEEccCCC-----cEEEc-cCCcEEEccCCCCCCEEEEEEEEc
Q psy12061 2 AGEGGNVTIFCNPE-----------AAPKPKFVWKKDGNIIGSGG-----RRKIF-ENGNLLISPVSRDDSGIYSCTATN 64 (626)
Q Consensus 2 ~~~G~~~~l~C~~~-----------g~p~p~i~W~~~~~~i~~~~-----~~~~~-~~g~L~i~~v~~~d~G~Y~C~a~n 64 (626)
+.+||.+.|.|..- ......+.|+|++..+.... ..++. .++.|.|..+..+|+|.|.|++.|
T Consensus 12 ~~~GE~v~l~C~~~~~~~~~~~~~~~~~~~~v~WyK~~~~~~~~~~~~~~~~Ri~~~~~~Lwf~Pa~~eDSG~Y~C~~rN 91 (104)
T cd05896 12 VLAGEPVRIKCALFYGYIRTNYSMAQSAGLSLMWYKSSGDGEEPIEIIFDGVRMSKEEDSIWFRPAELQDSGLYTCVLRN 91 (104)
T ss_pred EcCCCeEEEECCCccccccccccccccCCceEEEEECCCCCCCCCcccccceeEEEeCCEEEEEeCChhhCeEEEEEECC
Confidence 67999999999971 11234899999976554322 11332 456799999999999999999999
Q ss_pred CCCCceeeEEEEE
Q psy12061 65 VHGMDESKGRLIV 77 (626)
Q Consensus 65 ~~g~~~~~~~l~v 77 (626)
..........|.|
T Consensus 92 ~t~C~~~~i~l~V 104 (104)
T cd05896 92 STYCMKVSMSLTV 104 (104)
T ss_pred CCcceEEEEEEEC
Confidence 8766666665543
No 213
>PF13895 Ig_2: Immunoglobulin domain; PDB: 2V5R_B 2V5M_A 2V5S_B 2GI7_A 3LAF_A 4DEP_C 3O4O_B 2EC8_A 2E9W_A 1J87_A ....
Probab=99.01 E-value=7.1e-10 Score=81.38 Aligned_cols=69 Identities=36% Similarity=0.642 Sum_probs=54.5
Q ss_pred CCCCceEEEEeeeCCCCCCeeEEEeCCEEccCCCcEEEccCCcEEEccCCCCCCEEEEEEEEcCCCC-ceeeEEEEE
Q psy12061 2 AGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTATNVHGM-DESKGRLIV 77 (626)
Q Consensus 2 ~~~G~~~~l~C~~~g~p~p~i~W~~~~~~i~~~~~~~~~~~g~L~i~~v~~~d~G~Y~C~a~n~~g~-~~~~~~l~v 77 (626)
+.+|++++|.|.+.+.|.+.+.|++++..+.... +.|.|.++..+|+|.|+|.|.+..+. ....+.|.|
T Consensus 11 v~~g~~~~l~C~~~~~p~~~~~w~~~~~~~~~~~-------~~~~~~~~~~~~~g~y~C~~~~~~~~~~s~~~~v~V 80 (80)
T PF13895_consen 11 VEEGDSVTLTCSVSGNPPPQVQWYKNGSPINSSQ-------NGLFIPNVSPEDSGNYTCRASNGSGSNTSTSVNVTV 80 (80)
T ss_dssp EETTSEEEEEEEEESSSSSEEEEEETTEEEEEES-------SEEEESSEEGGGTEEEEEEEEETTEEEEEEEEEEEE
T ss_pred EeCCCcEEEEEEEEcccceeeeeeeeeeeeeeee-------eeeeeeeeccccCEEEEEEEEeCCCCeEeeeEEeeC
Confidence 5689999999999999999999999998886322 12778999999999999999996653 333445443
No 214
>cd05861 Ig1_PDGFR-alphabeta Frst immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b). Ig1_PDGFR-alphabeta: The first immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b). PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFRalpha binds to all three PDGFs, whereas the PDGFRbeta binds only to PDGF-B. PDGFRs alpha and beta have similar organization: an extracellular component with five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFRalpha and PDGFRbeta are essential for normal development.
Probab=98.99 E-value=2.6e-09 Score=78.17 Aligned_cols=77 Identities=23% Similarity=0.453 Sum_probs=54.9
Q ss_pred CCcEEEEEEecccCCcceeEEEeeCCEEeccccCCccCCCee----EecCCeEEEeecCCCCCEeEEEEEEeCCC--ceE
Q psy12061 96 HRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNI----NIDGGLLEITNASFADAGEYECVVKSTVG--KIS 169 (626)
Q Consensus 96 g~~~~l~C~~~~~p~p~~~i~W~~~~~~~~~~~~~~~~~~~~----~~~~~~l~i~~~~~~d~g~Y~C~a~n~~g--~~~ 169 (626)
|++++|.|.+.+.|.+ .+.|.+++....... .. ..+. ......|.|.+++.+|+|.|+|.|.|..+ ..+
T Consensus 1 Ge~~~l~C~~~~~~~~--~~~W~~~~~~~~~~~-~~--~~~~~~~~~~~~s~L~I~~~~~~DsG~Y~C~a~n~~~~~~~~ 75 (84)
T cd05861 1 GETITVNCIVQGNEVV--DFSWTYPGKDIGKGI-PE--VEEVKVPATTLRSTLTFPHATVEDSGTYECAAHESTQDQKAF 75 (84)
T ss_pred CCcEEEEEEEECCCcc--EEEEEECCccCCCCc-eE--EEEEecCCcEEEEEEEECCCCcCCCEEEEEEEEECccCccee
Confidence 7899999999998765 568998776432110 00 0011 11245899999999999999999999876 567
Q ss_pred EEEEEEEe
Q psy12061 170 TKTTVIVE 177 (626)
Q Consensus 170 ~~~~l~v~ 177 (626)
+++.|.|.
T Consensus 76 ~sv~i~V~ 83 (84)
T cd05861 76 KKVNITVH 83 (84)
T ss_pred EEEEEEEe
Confidence 77777664
No 215
>cd05881 Ig1_Necl-2 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Ig1_Necl-2: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-2, Necl-2 (also known as cell adhesion molecule 1 (CADM1), SynCAM1, IGSF4A, Tslc1, sgIGSF, and RA175). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-2 is expressed in a wide variety of tissues, and is a
Probab=98.99 E-value=4e-09 Score=77.78 Aligned_cols=64 Identities=19% Similarity=0.216 Sum_probs=50.7
Q ss_pred CCCCceEEEEeeeCCCCCCeeEEEeCCEEc--------cCCCcEEEcc-CC---cEEEccCCCCCCEEEEEEEEcC
Q psy12061 2 AGEGGNVTIFCNPEAAPKPKFVWKKDGNII--------GSGGRRKIFE-NG---NLLISPVSRDDSGIYSCTATNV 65 (626)
Q Consensus 2 ~~~G~~~~l~C~~~g~p~p~i~W~~~~~~i--------~~~~~~~~~~-~g---~L~i~~v~~~d~G~Y~C~a~n~ 65 (626)
+.+|++|+|+|.+.+.....+.|++-+..+ ..+.|+.+.. ++ +|.|.+++.+|+|.|.|.+...
T Consensus 9 v~~G~ta~L~C~v~~~~~~~v~w~~~~~~~i~~~~~~~~~d~Rf~~~~~~~~~~tL~I~~vq~~D~G~Y~Cqv~t~ 84 (95)
T cd05881 9 VVEGEVAIISCRVKNNDDSVIQLLNPNRQTIYFRDVRPLKDSRFQLVNFSSNELRVSLSNVSLSDEGRYFCQLYTD 84 (95)
T ss_pred EcCCCcEEEEEEEccCCccEEEEEecCCcEEEecCccccCCcCEEEEeCCCCEEEEEECcCCcccCEEEEEEEEcc
Confidence 578999999999999876778888755332 3567777665 33 5999999999999999999753
No 216
>cd05871 Ig_Semaphorin_classIII Immunoglobulin (Ig)-like domain of class III semaphorin. Ig_Semaphorin_class III; Immunoglobulin (Ig)-like domain of class III semaphorins. Semaphorins are classified into various classes on the basis of structural features additional to the Sema domain. Class III semaphorins are a vertebrate class having a Sema domain, an Ig domain, a short basic domain, and are secreted. They have been shown to be axonal guidance cues and have a part in the regulation of the cardiovascular, immune and respiratory systems. Sema3A, the prototype member of this class III subfamily, induces growth cone collapse and is an inhibitor of axonal sprouting. In perinatal rat cortex as a chemoattractant, it functions to direct, for pyramidal neurons, the orientated extension of apical dendrites. It may play a role, prior to the development of apical dendrites, in signaling the radial migration of newborn cortical neurons towards the upper layers. Sema3A selectively inhibits vascula
Probab=98.94 E-value=1e-08 Score=76.01 Aligned_cols=83 Identities=16% Similarity=0.175 Sum_probs=59.5
Q ss_pred ceEEecCCcEEEEEEecccCCcceeEEEeeC--CEEeccccCCccCCCeeEecCCeEEEeecCCCCCEeEEEEEE-eCCC
Q psy12061 90 KITIAAHRNLQLRCSAHTEELLDVAYIWTHN--GVRIGNMDLNELETPNINIDGGLLEITNASFADAGEYECVVK-STVG 166 (626)
Q Consensus 90 ~~~v~~g~~~~l~C~~~~~p~p~~~i~W~~~--~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~a~-n~~g 166 (626)
.+.+.+|++++|.|.. ..|.| .+.|++. +...... . ....+.....+.|.|.+++.+|+|.|+|.|. |..+
T Consensus 5 ~~~~~eG~~v~L~C~~-~~p~p--~v~Wykq~~g~~~~~~-~--~~~~r~~~~~~~L~I~~~~~~DsG~Y~C~a~~~~~~ 78 (91)
T cd05871 5 VVYGVENNSTFLECLP-KSPQA--SVKWLFQRGGDQRKEE-V--KTEERLIHTERGLLLRSLQRSDAGVYTCTAVEHSFS 78 (91)
T ss_pred EEEEecCCcEEEEEEC-CCCCc--eEEEEEECCCCCcccc-c--cccccEEEecCeEEEeeCChhHCEEEEEEEEccCCe
Confidence 3567899999999996 46655 5689984 3222111 0 0124555667889999999999999999997 5777
Q ss_pred ceEEEEEEEEeC
Q psy12061 167 KISTKTTVIVEG 178 (626)
Q Consensus 167 ~~~~~~~l~v~~ 178 (626)
.....+.|.|..
T Consensus 79 ~~~~~~~l~v~~ 90 (91)
T cd05871 79 QTLAKYTLHVIE 90 (91)
T ss_pred EEEEEEEEEEec
Confidence 677788887753
No 217
>cd05845 Ig2_L1-CAM_like Second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins. Ig2_L1-CAM_like: domain similar to the second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.
Probab=98.94 E-value=3.3e-09 Score=77.77 Aligned_cols=79 Identities=14% Similarity=0.270 Sum_probs=61.7
Q ss_pred CceeeeCCCceEEecCCcEEEEEE-ecccCCcceeEEEeeCCEEeccccCCccCCCeeEe-cCCeEEEeecCCCCCE-eE
Q psy12061 81 PSYYEQLPPKITIAAHRNLQLRCS-AHTEELLDVAYIWTHNGVRIGNMDLNELETPNINI-DGGLLEITNASFADAG-EY 157 (626)
Q Consensus 81 p~~~~~~~~~~~v~~g~~~~l~C~-~~~~p~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~-~~~~l~i~~~~~~d~g-~Y 157 (626)
|.+.....+.+.+.+|+.+.|.|. ..+.|.| .|.|++++...... +.|+.+ .++.|.|.+++.+|+| .|
T Consensus 3 ~~~~~~~~~~v~V~eG~~~~L~C~pP~g~P~P--~i~W~~~~~~~i~~------~~Ri~~~~~GnL~fs~v~~~D~g~~Y 74 (95)
T cd05845 3 PKWPKEKIRPVEVEEGDSVVLPCNPPKSAVPL--RIYWMNSDLLHITQ------DERVSMGQNGNLYFANVEEQDSHPDY 74 (95)
T ss_pred CcCCccccceeEEecCCCEEEEecCCCCCCCC--EEEEECCCCccccc------cccEEECCCceEEEEEEehhhCCCCe
Confidence 445555667899999999999997 6888877 45899876553322 256655 5699999999999999 89
Q ss_pred EEEEEeCCCc
Q psy12061 158 ECVVKSTVGK 167 (626)
Q Consensus 158 ~C~a~n~~g~ 167 (626)
.|.|.|....
T Consensus 75 ~C~a~~~~~~ 84 (95)
T cd05845 75 ICHAHFPGLR 84 (95)
T ss_pred EEEEEccccc
Confidence 9999988644
No 218
>cd05860 Ig4_SCFR Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR). Ig4_SCFR: The fourth Immunoglobulin (Ig)-like domain in stem cell factor receptor (SCFR). SCFR is organized as an extracellular component having five IG-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR. This fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth domain abolishes the ligand-induced dimerization of SCFR and completely inhibits signal transduction.
Probab=98.94 E-value=5.1e-09 Score=76.81 Aligned_cols=77 Identities=18% Similarity=0.274 Sum_probs=63.7
Q ss_pred CCCCceEEEEeeeCCCCCCe-eEEEeCCEEccCCCc--EEEccC------CcEEEccCCCCCCEEEEEEEEcCCCCceee
Q psy12061 2 AGEGGNVTIFCNPEAAPKPK-FVWKKDGNIIGSGGR--RKIFEN------GNLLISPVSRDDSGIYSCTATNVHGMDESK 72 (626)
Q Consensus 2 ~~~G~~~~l~C~~~g~p~p~-i~W~~~~~~i~~~~~--~~~~~~------g~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~ 72 (626)
|.+|+++.|.|.+.+.|+|+ +.|.+++..+.+... +..... ..|.+..++.+|+|.|+|.|.|..+.....
T Consensus 15 v~~gE~~~L~V~ieAYP~p~~~~W~~~~~~l~~~~~~~~~~~~~~~~rY~S~L~L~Rlk~~E~G~YTf~a~N~~~~~s~t 94 (101)
T cd05860 15 VNAGENLDLIVEYEAYPKPEHQQWIYMNRTLTNTSDHYVKSRNESNNRYVSELHLTRLKGTEGGTYTFLVSNSDASASVT 94 (101)
T ss_pred EECCCCEEEEEEEEeCCCCeeeEEEcCCcccCccccceeEEeccCceEEEEEEEEeecChhhCcEEEEEEECCCCeEEEE
Confidence 67999999999999999997 999999887754333 211111 249999999999999999999999999888
Q ss_pred EEEEEE
Q psy12061 73 GRLIVL 78 (626)
Q Consensus 73 ~~l~v~ 78 (626)
+.|.|.
T Consensus 95 F~l~v~ 100 (101)
T cd05860 95 FNVYVN 100 (101)
T ss_pred EEEEEe
Confidence 888773
No 219
>cd05717 Ig1_Necl-1-3_like First (N-terminal) immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-3 (also known as cell adhesion molecules CADM3, CADM1, and CADM2 respectively). Ig1_Necl-1-3_like: N-terminal immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), and Necl-3 (CADM2). At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1, Necl-2, and Necl-3 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the form
Probab=98.93 E-value=1.2e-08 Score=77.22 Aligned_cols=86 Identities=21% Similarity=0.367 Sum_probs=57.4
Q ss_pred CCceEEecCCcEEEEEEecccCCcceeEEEeeCCEEe-ccccCCccCCCeeEe-----cCCeEEEeecCCCCCEeEEEEE
Q psy12061 88 PPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRI-GNMDLNELETPNINI-----DGGLLEITNASFADAGEYECVV 161 (626)
Q Consensus 88 ~~~~~v~~g~~~~l~C~~~~~p~p~~~i~W~~~~~~~-~~~~~~~~~~~~~~~-----~~~~l~i~~~~~~d~g~Y~C~a 161 (626)
++++.+.+|++++|.|.+.+.+.+ .+.|++.+..+ ...........|+.. ....|+|.+++.+|+|.|+|.+
T Consensus 4 ~~~~~v~~G~~v~L~C~~~~~~~~--~v~W~~p~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~ 81 (95)
T cd05717 4 TQDVTVVEGGTATLKCRVKNNDNS--SLQWSNPNQQTLYFNDKRALRDNRIQLVNFSANELSISISNVSLSDEGRYTCSL 81 (95)
T ss_pred CCcEEEcCCCCEEEEEEECCCCCc--eEEEeCCCCcEEEeccccccccCcEEEEcCCCCeeEEEEccCCcccCEEEEEEE
Confidence 467889999999999999887765 56898633221 111110011234433 2357999999999999999999
Q ss_pred EeCCCceEEEEEEEE
Q psy12061 162 KSTVGKISTKTTVIV 176 (626)
Q Consensus 162 ~n~~g~~~~~~~l~v 176 (626)
.+... .++.+.|.|
T Consensus 82 ~~~~~-~~~~~~~~v 95 (95)
T cd05717 82 YTMPV-QTAKATVTV 95 (95)
T ss_pred ecCCC-ceEEEEEEC
Confidence 87653 355555543
No 220
>cd05727 Ig2_Contactin-2-like Second Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins. Ig2_Contactin-2-like: second Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.
Probab=98.90 E-value=7.2e-09 Score=76.19 Aligned_cols=78 Identities=18% Similarity=0.247 Sum_probs=57.4
Q ss_pred eeCCCceEEecCCcEEEEEEecc-cCCcceeEEEeeCCEEeccccCCccCCCeeEe-cCCeEEEeecCCCCCEeEEEEEE
Q psy12061 85 EQLPPKITIAAHRNLQLRCSAHT-EELLDVAYIWTHNGVRIGNMDLNELETPNINI-DGGLLEITNASFADAGEYECVVK 162 (626)
Q Consensus 85 ~~~~~~~~v~~g~~~~l~C~~~~-~p~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~-~~~~l~i~~~~~~d~g~Y~C~a~ 162 (626)
........+.+|+.+.|.|.... .|. +.|.|++++.++.... +..++.. .++.|.|.+++.+|+|.|+|.|.
T Consensus 7 ~~~~~~~~v~eG~~~~L~C~pP~g~P~--p~~~W~k~~~~~~~~~----d~r~~~~~~~G~L~fs~v~~~D~g~Y~C~A~ 80 (96)
T cd05727 7 LEERDEVKVKEGWGVVLFCDPPPHYPD--LSYRWLLNEFPNFIPE----DGRRFVSQTNGNLYIAKVEASDRGNYSCFVS 80 (96)
T ss_pred cCCcCceeeeeCCcEEEeeCCCCCCCC--CEEEEEECCccccccc----CCCeEEeCCCCcEEEeecCHhhCceeEEEEE
Confidence 34456678999999999997654 454 4679999987643210 1123333 47999999999999999999999
Q ss_pred eCCCce
Q psy12061 163 STVGKI 168 (626)
Q Consensus 163 n~~g~~ 168 (626)
|.....
T Consensus 81 n~~~~~ 86 (96)
T cd05727 81 SPSSTK 86 (96)
T ss_pred ecccCC
Confidence 986543
No 221
>cd05741 Ig_CEACAM_D1_like First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) and similar proteins. Ig_CEACAM_D1_like : immunoglobulin (IG)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily-like. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surf
Probab=98.88 E-value=9.2e-09 Score=77.53 Aligned_cols=64 Identities=28% Similarity=0.507 Sum_probs=52.0
Q ss_pred CceEEEEeeeCCCCCCeeEEEeCCEEcc------------------CCCcEEEccCCcEEEccCCCCCCEEEEEEEEcCC
Q psy12061 5 GGNVTIFCNPEAAPKPKFVWKKDGNIIG------------------SGGRRKIFENGNLLISPVSRDDSGIYSCTATNVH 66 (626)
Q Consensus 5 G~~~~l~C~~~g~p~p~i~W~~~~~~i~------------------~~~~~~~~~~g~L~i~~v~~~d~G~Y~C~a~n~~ 66 (626)
|++|+|.|.....+...|.|+|+..... -.+|..+..+++|.|.+++.+|+|.|+|.+....
T Consensus 1 G~~VtL~c~~~~~~~~~i~W~~~~~~~~~~~i~~~~~~~~~~~~~~~~~R~~~~~~~sL~I~~l~~~DsG~Y~c~v~~~~ 80 (92)
T cd05741 1 GESVTLPVSNLPENLQEITWYKGKDKSVEAEIASYIATNSTVFGPAYSGRETIYPNGSLLIQNLTKEDSGTYTLQIISTN 80 (92)
T ss_pred CCcEEEEcccCCCCCEEEEEECCCCCCcceEEEEEecCCceeECCCcCCeEEEcCCceEEEccCCchhcEEEEEEEEcCC
Confidence 8999999999876667999999653321 1256777778899999999999999999999876
Q ss_pred CC
Q psy12061 67 GM 68 (626)
Q Consensus 67 g~ 68 (626)
|.
T Consensus 81 ~~ 82 (92)
T cd05741 81 GV 82 (92)
T ss_pred Cc
Confidence 44
No 222
>smart00408 IGc2 Immunoglobulin C-2 Type.
Probab=98.87 E-value=1.5e-08 Score=70.25 Aligned_cols=63 Identities=25% Similarity=0.605 Sum_probs=51.3
Q ss_pred cCCcEEEEEEecccCCcceeEEEeeCCEEeccccCCccCCCeeEecCCeEEEeecCCCCCEeEEEEEEeCCC
Q psy12061 95 AHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEITNASFADAGEYECVVKSTVG 166 (626)
Q Consensus 95 ~g~~~~l~C~~~~~p~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~a~n~~g 166 (626)
+|++++|.|.+.+.+.+ .+.|++++..+.. ..........|.|.+++..|+|.|+|.+.|..|
T Consensus 1 ~g~~~~l~C~~~~~~~~--~v~W~~~~~~~~~-------~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~n~~g 63 (63)
T smart00408 1 EGQSVTLTCPAEGDPVP--NITWLKDGKPLPE-------SNRLSASGSTLTIKSVSLEDSGEYTCVAENSAG 63 (63)
T ss_pred CCceEEEEeeCccCCCC--eEEEEECCEECCC-------CCEEecCCcEEEEeeCCcccCEEEEEEEecCCC
Confidence 48899999998877765 5689999988762 134444677999999999999999999998765
No 223
>cd05759 Ig2_KIRREL3-like Second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). Ig2_KIRREL3-like: domain similar to the second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.
Probab=98.86 E-value=1.6e-08 Score=73.92 Aligned_cols=64 Identities=20% Similarity=0.550 Sum_probs=47.9
Q ss_pred eEEEEeeeCC-CCCCeeEEEeCCEEccCCCc-EEEccCC-------cEEEccCCCCCCEEEEEEEEcCCCCce
Q psy12061 7 NVTIFCNPEA-APKPKFVWKKDGNIIGSGGR-RKIFENG-------NLLISPVSRDDSGIYSCTATNVHGMDE 70 (626)
Q Consensus 7 ~~~l~C~~~g-~p~p~i~W~~~~~~i~~~~~-~~~~~~g-------~L~i~~v~~~d~G~Y~C~a~n~~g~~~ 70 (626)
.+.|.|.+.| .|.|.|+|+|+|++|..... ..+..+| .|.|.....+|.|.|+|.|.|......
T Consensus 1 ~~~L~C~v~g~~P~~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~~~~~y~C~a~n~~l~~~ 73 (82)
T cd05759 1 PYNLTCRARGAKPAAEIIWFRDGEVLDGATYSKELLKDGKRETTVSTLPITPSDHDTGRTFTCRARNEALPTG 73 (82)
T ss_pred CEEEEEEEeCccCCCEEEEEECCEEccCceeeeeEecCCCeEEEEEEEEEeCceecCCCEEEEEEcCccCCCC
Confidence 3689999987 58899999999999864321 1222332 478888888899999999998765533
No 224
>cd05896 Ig1_IL1RAPL-1_like First immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1). Ig1_ IL1RAPL-1_like: domain similar to the first immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1). IL-1 alpha and IL-1 beta are cytokines which participates in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of
Probab=98.85 E-value=2.5e-08 Score=73.40 Aligned_cols=86 Identities=12% Similarity=0.239 Sum_probs=61.7
Q ss_pred ceEEecCCcEEEEEEecc---------cCCcceeEEEeeCCEEeccccCCccCCCeeEecCCeEEEeecCCCCCEeEEEE
Q psy12061 90 KITIAAHRNLQLRCSAHT---------EELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEITNASFADAGEYECV 160 (626)
Q Consensus 90 ~~~v~~g~~~~l~C~~~~---------~p~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~ 160 (626)
.+.+.+|+.+.|.|.... .....+.+.|+|++..+....-......|+...+..|.|.++..+|+|.|+|+
T Consensus 9 ~~~~~~GE~v~l~C~~~~~~~~~~~~~~~~~~~~v~WyK~~~~~~~~~~~~~~~~Ri~~~~~~Lwf~Pa~~eDSG~Y~C~ 88 (104)
T cd05896 9 KYMVLAGEPVRIKCALFYGYIRTNYSMAQSAGLSLMWYKSSGDGEEPIEIIFDGVRMSKEEDSIWFRPAELQDSGLYTCV 88 (104)
T ss_pred eEEEcCCCeEEEECCCccccccccccccccCCceEEEEECCCCCCCCCcccccceeEEEeCCEEEEEeCChhhCeEEEEE
Confidence 467889999999999621 01122467999998655543100011248888999999999999999999999
Q ss_pred EEeCCCceEEEEEEE
Q psy12061 161 VKSTVGKISTKTTVI 175 (626)
Q Consensus 161 a~n~~g~~~~~~~l~ 175 (626)
+.|...-....+.|.
T Consensus 89 ~rN~t~C~~~~i~l~ 103 (104)
T cd05896 89 LRNSTYCMKVSMSLT 103 (104)
T ss_pred ECCCCcceEEEEEEE
Confidence 999876655565554
No 225
>cd07690 Ig1_CD4 First immunoglobulin (Ig) domain of CD4. Ig1_CD4; first immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy.
Probab=98.85 E-value=9e-09 Score=76.09 Aligned_cols=76 Identities=14% Similarity=0.201 Sum_probs=51.7
Q ss_pred eEEecCCcEEEEEEecccCCcceeEEEeeCCEEeccccCCc-------cCCCeeEe-------cCCeEEEeecCCCCCEe
Q psy12061 91 ITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNE-------LETPNINI-------DGGLLEITNASFADAGE 156 (626)
Q Consensus 91 ~~v~~g~~~~l~C~~~~~p~p~~~i~W~~~~~~~~~~~~~~-------~~~~~~~~-------~~~~l~i~~~~~~d~g~ 156 (626)
+.+.+|++++|.|.+.+.+.+ .+.|++++........+. ....|+.. ....|.|.+++.+|+|.
T Consensus 2 v~~~~G~~VtL~C~~s~~~~~--~i~W~~~~~k~~~g~~~~l~~~~~~~~~~r~~~~~~~~~~g~~~L~I~~l~~sDsgt 79 (94)
T cd07690 2 VLGKKGDTAELPCTASQKKSI--QFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRNLWDQGSFPLIIKNLKIEDSDT 79 (94)
T ss_pred eEeeCCCCEEEEEEeCCCCCc--EEEEEECCcEEccCcCCEEEEecccccCCCCceecccCCCCeEEEEECCCCHHHCEE
Confidence 357899999999999988765 558998763321100000 01122221 22469999999999999
Q ss_pred EEEEEEeCCCce
Q psy12061 157 YECVVKSTVGKI 168 (626)
Q Consensus 157 Y~C~a~n~~g~~ 168 (626)
|+|.+.|..+..
T Consensus 80 Y~C~v~~~~~~~ 91 (94)
T cd07690 80 YICEVEDKKEEV 91 (94)
T ss_pred EEEEECCccceE
Confidence 999999987654
No 226
>cd05897 Ig2_IL1R2_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2). Ig2_IL1R2_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds the type II (IL1R2) represented in this group. Mature IL1R2 consists of three IG-like domains, a transmembrane domain, and a short cytoplasmic domain. It lacks the large cytoplasmic domain of Mature IL1R1, and does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.
Probab=98.83 E-value=2.7e-08 Score=73.29 Aligned_cols=72 Identities=19% Similarity=0.301 Sum_probs=53.0
Q ss_pred eEEecCCcEEEEEEe-ccc--CCcceeEEEeeCCEEeccccCCccCCCeeEe--cCCeEEEeecCCCCCEeEEEEEEeCC
Q psy12061 91 ITIAAHRNLQLRCSA-HTE--ELLDVAYIWTHNGVRIGNMDLNELETPNINI--DGGLLEITNASFADAGEYECVVKSTV 165 (626)
Q Consensus 91 ~~v~~g~~~~l~C~~-~~~--p~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~--~~~~l~i~~~~~~d~g~Y~C~a~n~~ 165 (626)
..+..|.+..|.|.- .+- +.+..++.|+||+.++.... .+... +.+.|.|.++..+|+|.|+|.+.+..
T Consensus 5 ~~~~~~~~~~l~Cp~~~~f~~~~~~~~v~WYKd~~~l~~~~------~~~~~~~~~~~L~I~~v~~~D~G~YtC~~~~~~ 78 (95)
T cd05897 5 QILFTSTSGKLVCPDLSDFTINRTDVELQWYKDSVLLDKDN------EKFYSLKGSTYLHIIDVSLNDSGYYTCKLQFTH 78 (95)
T ss_pred eEeccccCcEEECCCHHHcccCCCCCcEEEccCCEECcCCC------cceEecCCCCEEEEEEcChhhCEEEEEEEEEee
Confidence 456789999999972 221 23334679999999986432 22222 45689999999999999999999987
Q ss_pred Cce
Q psy12061 166 GKI 168 (626)
Q Consensus 166 g~~ 168 (626)
|..
T Consensus 79 ~g~ 81 (95)
T cd05897 79 EGK 81 (95)
T ss_pred CCE
Confidence 654
No 227
>PHA03376 BARF1; Provisional
Probab=98.79 E-value=7.7e-08 Score=77.35 Aligned_cols=117 Identities=18% Similarity=0.205 Sum_probs=76.4
Q ss_pred CCCCceEEEEeeeCCC---CCCeeEEEeCCE-----Ec------------cCCCcEEEccC-C--cEEEccCCCCCCEEE
Q psy12061 2 AGEGGNVTIFCNPEAA---PKPKFVWKKDGN-----II------------GSGGRRKIFEN-G--NLLISPVSRDDSGIY 58 (626)
Q Consensus 2 ~~~G~~~~l~C~~~g~---p~p~i~W~~~~~-----~i------------~~~~~~~~~~~-g--~L~i~~v~~~d~G~Y 58 (626)
+..|+++.|+|..... +.-.|.|+|.+. -+ ...++..++.+ | +|.|.+++.+|.|.|
T Consensus 23 a~VGEda~LsC~lnp~ssa~~MrIrWqKs~p~~~~VvL~~~ggdVv~~QmEyRGrtD~~~~~gnvsLvI~~l~lSDdGtY 102 (221)
T PHA03376 23 AFLGERVTLTSYWRRVSLGPEIEVSWFKLGPGEEQVLIGRMHHDVIFIEWPFRGFFDIHRSANTFFLVVTAANISHDGNY 102 (221)
T ss_pred heeCCcEEEEecccCccCCCceEEEEEecCCCCCCEEEEEcCCeeeeeeeccccEEEEEecCCeEEEEEEeeeecCCceE
Confidence 4679999999998633 445999999431 11 12244444332 2 599999999999999
Q ss_pred EEEEEcCCCCceeeEEEEEEeCCceeeeCCCceEEecCCcEEEEEEecccCCcceeEEEeeCC
Q psy12061 59 SCTATNVHGMDESKGRLIVLHGPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNG 121 (626)
Q Consensus 59 ~C~a~n~~g~~~~~~~l~v~~~p~~~~~~~~~~~v~~g~~~~l~C~~~~~p~p~~~i~W~~~~ 121 (626)
+|...-........-.|.+..+-....... ......-+..++.|...+-|.|.+ .|.-+.
T Consensus 103 ~C~fQkge~~~~k~ehLt~V~~~~Lsv~a~-~~dFp~~~~~~i~C~sggfP~P~~--~Wle~~ 162 (221)
T PHA03376 103 LCRMKLGETEVTKQEHLSVVKPLTLSVHSE-RSQFPDFSVLTVTCTVNAFPHPHV--QWLMPE 162 (221)
T ss_pred EEEEEcCCCceeeeeeeeeeecceEEEEec-cccCCCCCeeEEEEecCCcCCchh--eecccc
Confidence 999997766666666666644332221110 000112567899999888888865 798653
No 228
>cd05775 Ig_SLAM-CD84_like_N N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like. Ig_SLAM-CD84_like_N: The N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like. The SLAM family is a group of immune-cell specific receptors that can regulate both adaptive and innate immune responses. Members of this group include proteins such as CD84, SLAM (CD150), Ly-9 (CD229), NTB-A (ly-108, SLAM6), 19A (CRACC), and SLAMF9. The genes coding for the SLAM family are nested on chromosome 1, in humans at 1q23, and in mice at 1H2. The SLAM family is a subset of the CD2 family, which also includes CD2 and CD58 located on chromosome 1 at 1p13 in humans. In mice, CD2 is located on chromosome 3, and there is no CD58 homolog. The SLAM family proteins are organized as an extracellular domain with either two or four Ig-like domains, a single transmembrane segment, and a cytoplasmic region
Probab=98.79 E-value=2.6e-08 Score=75.19 Aligned_cols=76 Identities=21% Similarity=0.267 Sum_probs=55.7
Q ss_pred CCCCceEEEEeeeCC-CCCCeeEEEeCCEEcc--C---------------CCcEEEccC-CcEEEccCCCCCCEEEEEEE
Q psy12061 2 AGEGGNVTIFCNPEA-APKPKFVWKKDGNIIG--S---------------GGRRKIFEN-GNLLISPVSRDDSGIYSCTA 62 (626)
Q Consensus 2 ~~~G~~~~l~C~~~g-~p~p~i~W~~~~~~i~--~---------------~~~~~~~~~-g~L~i~~v~~~d~G~Y~C~a 62 (626)
+..|++|+|.|.... .....|.|+|....+. . .+|..+..+ ++|.|.+++.+|+|.|.|.+
T Consensus 1 g~~G~sVtL~c~~~~~~~~~~v~W~~~~~~~i~~~~~~~~~~~~~~~~~f~~R~~~~~~~~sL~I~~~~~~DsG~Y~c~v 80 (97)
T cd05775 1 GILGGSVTLPLNIPDGTEIESITWSFNTSLAIITPGEETAPEIIVTDPSYKERVNFSQNDYSLQISNLKMEDAGSYRAEI 80 (97)
T ss_pred CccCCeEEEeCCCCCCcEEEEEEEecCCEeEEEecCCCCCCccEEeCCCceeeEEecCCceeEEECCCchHHCEEEEEEE
Confidence 468999999999865 4556999998654321 1 134444343 68999999999999999999
Q ss_pred EcCCCCc-eeeEEEEE
Q psy12061 63 TNVHGMD-ESKGRLIV 77 (626)
Q Consensus 63 ~n~~g~~-~~~~~l~v 77 (626)
.+..|.. .....|.|
T Consensus 81 ~~~~~~~~~~~f~L~v 96 (97)
T cd05775 81 NTKNGVTITKEFTLHI 96 (97)
T ss_pred EcCCCCeEEEEEEEEe
Confidence 9887663 44566655
No 229
>cd05714 Ig_CSPGs_LP Immunoglobulin (Ig)-like domain of chondroitin sulfate proteoglycans (CSPGs), human cartilage link protein (LP) and similar proteins. Ig_CSPGs_LP: immunoglobulin (Ig)-like domain similar to that found in chondroitin sulfate proteoglycans (CSPGs) and human cartilage link protein (LP). Included in this group are the CSPGs aggrecan, versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue.
Probab=98.78 E-value=5.6e-08 Score=75.24 Aligned_cols=76 Identities=28% Similarity=0.477 Sum_probs=55.0
Q ss_pred CCceEEEEeeeCCCC------CCeeEEEeCC-----E-Ec--cCC----------CcEEEc----cCCcEEEccCCCCCC
Q psy12061 4 EGGNVTIFCNPEAAP------KPKFVWKKDG-----N-II--GSG----------GRRKIF----ENGNLLISPVSRDDS 55 (626)
Q Consensus 4 ~G~~~~l~C~~~g~p------~p~i~W~~~~-----~-~i--~~~----------~~~~~~----~~g~L~i~~v~~~d~ 55 (626)
.|++|+|.|.....+ .+.|.|+|.. . .+ ..+ .|.... .+.+|+|.+++.+|+
T Consensus 1 ~G~~V~L~C~~~~~~~~~~~~~~~i~W~k~~~~~~~~~~v~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~~v~~sD~ 80 (106)
T cd05714 1 LGGNVTLPCRFHLEPALSAPHGPRIKWTKLESDGAKEVDVLVAIGGRVKVYGSGRVRVPLYPADPGDASLVITDLRLEDS 80 (106)
T ss_pred CCCCEEEeEEeECCcccCCCCCcEEEEEEeCCCCCceEEEEEEcCCEEEEcCCCceEEEeeCCCCCcceEEECCCCHHHC
Confidence 499999999997654 4599999962 1 11 011 122111 123799999999999
Q ss_pred EEEEEEEEcCCCCceeeEEEEEEe
Q psy12061 56 GIYSCTATNVHGMDESKGRLIVLH 79 (626)
Q Consensus 56 G~Y~C~a~n~~g~~~~~~~l~v~~ 79 (626)
|.|+|.+.+..+.......|.|..
T Consensus 81 G~Y~C~v~~~~~~~~~~v~L~V~~ 104 (106)
T cd05714 81 GRYRCEVIDGIEDEQDTVELEVRG 104 (106)
T ss_pred EEEEEEEEcCCCceEEEEEEEEEE
Confidence 999999999877777788888753
No 230
>KOG4802|consensus
Probab=98.78 E-value=3.9e-07 Score=82.34 Aligned_cols=140 Identities=24% Similarity=0.310 Sum_probs=93.0
Q ss_pred CccceEEEeCCccCceEEEEEEEeeCCCC---CCCCccEEEeecCCCCCCCCceEEEeeeC---CCEEEEEEeecCCCCC
Q psy12061 449 TTRNWALIVGLQPDTKYYVKVMAYNNAGE---GPESERYLERTYRKAPQKPPSAVHIKGIN---PTTVHVTWRYVSPSFE 522 (626)
Q Consensus 449 ~~~~~~~i~~L~p~t~Y~v~V~a~~~~g~---s~~s~~~~~~t~~~~p~~~p~~l~~~~~~---~~~~~l~W~~~~~~~~ 522 (626)
...+.+.+.++.||.-|.|+|.|+|..|. +.+|........+.+|+ +|.++++..+. .-...|-|. |...
T Consensus 206 ~~e~~~~~t~~rPgRwyefrvaavn~~G~rGFs~PSkpf~ssk~pkaPp-~P~dl~l~~v~~dG~~~~~v~w~---P~~s 281 (516)
T KOG4802|consen 206 MEENTYIFTDMRPGRWYEFRVAAVNAYGFRGFSEPSKPFPSSKNPKAPP-SPNDLKLIGVQFDGRYMLKVVWC---PSKS 281 (516)
T ss_pred CCCceeeeeecCcceeEEEEEeeeecccccccCCCCCCCCCCCCCCCCc-CcccceeeeeeecceEEEEEEeC---CCCC
Confidence 33345889999999999999999998764 45666665555555555 78888866552 223556676 3446
Q ss_pred CCceeeEEEEEEEecc-CCccccceeeecCccceEEecCCCCCceEEEEEEEEecCCCCCCCCC-cEEEeec
Q psy12061 523 EEPIIGYKVRVWEVDQ-DMSRANDTIIPVGNTLDADIVDLSPGKRYHMRVLAFSNGGDGRMSSP-AITFQMG 592 (626)
Q Consensus 523 ~~~i~~Y~i~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~L~p~~~Y~~~V~a~~~~G~g~~s~~-~~~~~~~ 592 (626)
+-+|..|.|.|.-.-. ....+..+-.....+..+.|.+|.|+..|.+.|+|..--|.+..-+. -..|.++
T Consensus 282 dlPv~~Yki~Ws~~v~s~k~~m~tks~~~k~thq~si~~L~Pns~Y~VevqAi~y~g~~rLksek~~~F~~T 353 (516)
T KOG4802|consen 282 DLPVEKYKITWSLYVNSAKASMITKSSYVKDTHQFSIKELLPNSSYYVEVQAISYLGSRRLKSEKWMLFNTT 353 (516)
T ss_pred CCcceeeEEEeehhhhhhhhhcccccceeeccchhhhhhcCCCCeEEEEEEEEEeccCcccccceEEEEeec
Confidence 7889999998643331 11111222222223345559999999999999999999998774332 2455544
No 231
>cd05872 Ig_Sema4B_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4B. Ig_Sema4B_like; Immunoglobulin (Ig)-like domain of Sema4B_like. Sema4B is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4B has extracellular Sema and Ig domains, a transmembrane domain and a short cytoplasmic domain. Sema4B has been shown to preferentially regulate the development of the postsynaptic specialization at the glutamatergic synapses. This cytoplasmic domain includes a PDZ-binding motif upon which the synaptic localization of Sem4B is dependent. Sema4B is a ligand of CLCP1, CLCP1 was identified in an expression profiling analysis, which compared a highly metastic lung cancer subline with its low metastic parental line. Sema4B was shown to promote CLCP1 endocytosis, and their interaction is a potential target for therapeutic intervention of metastasis.
Probab=98.76 E-value=7.3e-08 Score=69.26 Aligned_cols=71 Identities=20% Similarity=0.306 Sum_probs=57.0
Q ss_pred CceEEecCCcEEEEEEecccCCcceeEEEeeCCEEeccccCCccCCCeeEecCCeEEEeecCCCCCEeEEEEEEeCCCce
Q psy12061 89 PKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEITNASFADAGEYECVVKSTVGKI 168 (626)
Q Consensus 89 ~~~~v~~g~~~~l~C~~~~~p~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~a~n~~g~~ 168 (626)
.+.++..|+++.|.|....... ++.|+++|..+..+ .++......|.|.+++.+|+|.|+|.+. +.|..
T Consensus 4 ~~~tv~~g~~v~L~C~~~s~~A---~v~W~~ng~~l~~~-------~r~~~~~~GLlI~~~~~~dsG~Y~C~s~-E~gf~ 72 (85)
T cd05872 4 KNRTVAPGADVVLPCQLRSNLA---SPVWLFNGTPLNAQ-------FSYRVGTDGLLILVTSPEHSGTYRCYSE-EEGFQ 72 (85)
T ss_pred eEEEEecCCCEEEECCCCCCCc---cEEEEECCcccCCC-------cceEEeCCCCEEEECCHhhCEEEEEEEe-cCCCe
Confidence 5678999999999999888743 67999999998643 4666667778899999999999999986 44544
Q ss_pred EE
Q psy12061 169 ST 170 (626)
Q Consensus 169 ~~ 170 (626)
..
T Consensus 73 ~~ 74 (85)
T cd05872 73 QL 74 (85)
T ss_pred EE
Confidence 33
No 232
>cd05877 Ig_LP_like Immunoglobulin (Ig)-like domain of human cartilage link protein (LP). Ig_LP_like: immunoglobulin (Ig)-like domain similar to that that found in human cartilage link protein (LP). In cartilage, chondroitin-keratan sulfate proteoglycan (CSPG), aggrecan, forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes.
Probab=98.74 E-value=6.7e-08 Score=74.85 Aligned_cols=75 Identities=25% Similarity=0.390 Sum_probs=56.0
Q ss_pred CCceEEEEeeeCCCC------CCeeEEEeCCE------E--cc----------CCCcEEEcc----CCcEEEccCCCCCC
Q psy12061 4 EGGNVTIFCNPEAAP------KPKFVWKKDGN------I--IG----------SGGRRKIFE----NGNLLISPVSRDDS 55 (626)
Q Consensus 4 ~G~~~~l~C~~~g~p------~p~i~W~~~~~------~--i~----------~~~~~~~~~----~g~L~i~~v~~~d~ 55 (626)
+|++|+|.|.....| ...|.|+|... . +. ..+|..+.. +.+|.|.+++.+|+
T Consensus 1 ~G~~vtL~C~~~~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~sL~I~~v~~~Ds 80 (106)
T cd05877 1 RGGNVTLPCRYHYEPELSAPRKIRVKWTKLESDYLKEEDVLVAIGTRHKSYGSYQGRVFLRRAHDLDASLVITDLRLEDY 80 (106)
T ss_pred CCCcEEEEeEeECCCcCCCCccceEEEEEecCCCCeeEEEEEEcCcEEEeccCccCcEEecCCCCCcEEEEEccCChHHC
Confidence 599999999987653 34799999531 1 11 124555532 23699999999999
Q ss_pred EEEEEEEEcCCCCceeeEEEEEE
Q psy12061 56 GIYSCTATNVHGMDESKGRLIVL 78 (626)
Q Consensus 56 G~Y~C~a~n~~g~~~~~~~l~v~ 78 (626)
|.|+|.+.+..+.......|.|.
T Consensus 81 G~Y~C~v~~~~~~~~~~~~l~v~ 103 (106)
T cd05877 81 GRYRCEVIDGLEDESVVVALRLR 103 (106)
T ss_pred EEEEEEEEecccceEEEEEEEEE
Confidence 99999999988888777888774
No 233
>cd05751 Ig1_LILRB1_like First immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1) and similar proteins. Ig1_LILRB1_like: domain similar to the first immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1). This group includes, LILRA5 (LIR9), an activating natural cytotoxicity receptor NKp46, and the immune-type receptor glycoprotein VI (GPVI). LILRs are a family of immunoreceptors expressed on expressed on T and B cells, on monocytes, dendritic cells, and subgroups of natural killer (NK) cells. The human LILR family contains nine proteins (LILRA1-3,and 5, and LILRB1-5). From functional assays, and as the cytoplasmic domains of various LILRs, for example LILRB1 (LIR-1), LILRB2 (LIR-2), and LILRB3 (LIR-3) contain immunoreceptor tyrosine-based inhibitory motifs (ITIMs) it is thought that LIR proteins are inhibitory receptors. Of the eight LIR family proteins, only LIR-1(LILRB1), and LIR-2 (LILRB2),
Probab=98.72 E-value=3.3e-08 Score=73.69 Aligned_cols=64 Identities=16% Similarity=0.279 Sum_probs=48.4
Q ss_pred CCCCceEEEEeeeCCCCCCeeEEEeCCEEccCCCcEEEccCCcEEEccCCCCCCEEEEEEEEcCC
Q psy12061 2 AGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTATNVH 66 (626)
Q Consensus 2 ~~~G~~~~l~C~~~g~p~p~i~W~~~~~~i~~~~~~~~~~~g~L~i~~v~~~d~G~Y~C~a~n~~ 66 (626)
|.+|++|+|.|... .+...+.|+|+|..............+.+.|.+|+.+|+|.|+|...+..
T Consensus 13 V~~G~~VtL~C~~~-~~~~~f~l~k~g~~~~~~~~~~~~~~~~f~i~~v~~~~~G~Y~C~~~~~~ 76 (91)
T cd05751 13 VPLGKPVTLRCQGP-YGAVEYRLYREGSTFAVKKPPEPQNKAKFFIPSMKREHAGRYRCYYRSGV 76 (91)
T ss_pred cCCCCcEEEEEecC-CCCCEEEEEECCCCccccccCCCceeEEEEccCCChhHCEEEEEEEECCC
Confidence 57899999999886 66779999999886432110001113469999999999999999999863
No 234
>PF13895 Ig_2: Immunoglobulin domain; PDB: 2V5R_B 2V5M_A 2V5S_B 2GI7_A 3LAF_A 4DEP_C 3O4O_B 2EC8_A 2E9W_A 1J87_A ....
Probab=98.72 E-value=9.4e-08 Score=69.93 Aligned_cols=71 Identities=28% Similarity=0.411 Sum_probs=56.0
Q ss_pred eEEecCCcEEEEEEecccCCcceeEEEeeCCEEeccccCCccCCCeeEecCCeEEEeecCCCCCEeEEEEEEeCCC-ceE
Q psy12061 91 ITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEITNASFADAGEYECVVKSTVG-KIS 169 (626)
Q Consensus 91 ~~v~~g~~~~l~C~~~~~p~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~a~n~~g-~~~ 169 (626)
..+.+|++++|.|.+.+.|.+ .+.|++++..+... ...|.|.++..+|+|.|+|.+.+..+ ..+
T Consensus 9 ~~v~~g~~~~l~C~~~~~p~~--~~~w~~~~~~~~~~-------------~~~~~~~~~~~~~~g~y~C~~~~~~~~~~s 73 (80)
T PF13895_consen 9 QSVEEGDSVTLTCSVSGNPPP--QVQWYKNGSPINSS-------------QNGLFIPNVSPEDSGNYTCRASNGSGSNTS 73 (80)
T ss_dssp SEEETTSEEEEEEEEESSSSS--EEEEEETTEEEEEE-------------SSEEEESSEEGGGTEEEEEEEEETTEEEEE
T ss_pred eEEeCCCcEEEEEEEEcccce--eeeeeeeeeeeeee-------------eeeeeeeeeccccCEEEEEEEEeCCCCeEe
Confidence 568999999999999987764 67999999888643 12277888999999999999999654 455
Q ss_pred EEEEEEE
Q psy12061 170 TKTTVIV 176 (626)
Q Consensus 170 ~~~~l~v 176 (626)
..+.|.|
T Consensus 74 ~~~~v~V 80 (80)
T PF13895_consen 74 TSVNVTV 80 (80)
T ss_dssp EEEEEEE
T ss_pred eeEEeeC
Confidence 6666654
No 235
>cd05883 Ig2_Necl-2 Second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Ig2_Necl-2: second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Nectin-like molecules (Necls) have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is expressed in a wide variety of tissues, and is a putative tumour suppressor gene, which is downregulated in aggressive neuroblastoma. Ig domains are likely to participate in ligand binding and recognition.
Probab=98.71 E-value=1.6e-07 Score=66.54 Aligned_cols=72 Identities=15% Similarity=0.187 Sum_probs=49.8
Q ss_pred eEEEEeeeCCC-CCCeeEEEeCCEEccCCCcEEEcc-CC-----cEEEccCCCCCCEEEEEEEEcCCCC-ceeeEEEEEE
Q psy12061 7 NVTIFCNPEAA-PKPKFVWKKDGNIIGSGGRRKIFE-NG-----NLLISPVSRDDSGIYSCTATNVHGM-DESKGRLIVL 78 (626)
Q Consensus 7 ~~~l~C~~~g~-p~p~i~W~~~~~~i~~~~~~~~~~-~g-----~L~i~~v~~~d~G~Y~C~a~n~~g~-~~~~~~l~v~ 78 (626)
.+.|.|.+.|. |++.|.|+|++.++.......... .+ +|.|..-..+|...|+|.|.|..-. ......|.|.
T Consensus 1 ~~~L~C~s~gSkP~A~I~W~k~~~~l~~~~~~~~~~~~~~t~~S~L~~~p~~eDdG~~~~C~a~~~~l~~~~~~~~L~V~ 80 (82)
T cd05883 1 EIELNCTAMASKPAATIRWFKGNKELTGKSTVEETWSRMFTVTSQLMLKVTKEDDGVPVICLVDHPAVKDLQTQRYLEVQ 80 (82)
T ss_pred CEEEEEEecCCCCCCEEEEEECCEECcCcccceeccCCCcEEEEEEEEECchhhCCCEEEEEEcCcccCCceeeEEEEEE
Confidence 37899999776 889999999999996542211111 22 4888766667777899999986532 3334566654
No 236
>smart00409 IG Immunoglobulin.
Probab=98.71 E-value=3.4e-07 Score=68.00 Aligned_cols=79 Identities=23% Similarity=0.474 Sum_probs=61.3
Q ss_pred CceEEecCCcEEEEEEecccCCcceeEEEeeC-CEEeccccCCccCCCeeEe--c--CCeEEEeecCCCCCEeEEEEEEe
Q psy12061 89 PKITIAAHRNLQLRCSAHTEELLDVAYIWTHN-GVRIGNMDLNELETPNINI--D--GGLLEITNASFADAGEYECVVKS 163 (626)
Q Consensus 89 ~~~~v~~g~~~~l~C~~~~~p~p~~~i~W~~~-~~~~~~~~~~~~~~~~~~~--~--~~~l~i~~~~~~d~g~Y~C~a~n 163 (626)
....+..|+++.|.|.+.+.+. ..+.|+++ +..+... .++.. . ...|.|.++...|+|.|+|.+.+
T Consensus 2 ~~~~~~~g~~~~l~C~~~~~~~--~~~~W~~~~~~~v~~~-------~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~v~~ 72 (86)
T smart00409 2 PSVTVKEGESVTLSCEVSGSPP--PEVTWYKQGGKLLAES-------GRFSVSRSGSNSTLTISNVTPEDSGTYTCAATN 72 (86)
T ss_pred CcEEEeCCCeEEEEEEEccCCC--CeEEEEECCCEEcCCC-------CcEEEEEcCCeeEEEEEeeccccCeEEEEEEEc
Confidence 4567889999999999998844 46689998 7777522 12222 2 36899999999999999999998
Q ss_pred CCCceEEEEEEEE
Q psy12061 164 TVGKISTKTTVIV 176 (626)
Q Consensus 164 ~~g~~~~~~~l~v 176 (626)
..+.....+.|.|
T Consensus 73 ~~~~~~~~~~l~V 85 (86)
T smart00409 73 SSGSASSTTTLTV 85 (86)
T ss_pred CCCeEEEEEEEEE
Confidence 8888777677665
No 237
>smart00410 IG_like Immunoglobulin like. IG domains that cannot be classified into one of IGv1, IGc1, IGc2, IG.
Probab=98.71 E-value=3.4e-07 Score=68.00 Aligned_cols=79 Identities=23% Similarity=0.474 Sum_probs=61.3
Q ss_pred CceEEecCCcEEEEEEecccCCcceeEEEeeC-CEEeccccCCccCCCeeEe--c--CCeEEEeecCCCCCEeEEEEEEe
Q psy12061 89 PKITIAAHRNLQLRCSAHTEELLDVAYIWTHN-GVRIGNMDLNELETPNINI--D--GGLLEITNASFADAGEYECVVKS 163 (626)
Q Consensus 89 ~~~~v~~g~~~~l~C~~~~~p~p~~~i~W~~~-~~~~~~~~~~~~~~~~~~~--~--~~~l~i~~~~~~d~g~Y~C~a~n 163 (626)
....+..|+++.|.|.+.+.+. ..+.|+++ +..+... .++.. . ...|.|.++...|+|.|+|.+.+
T Consensus 2 ~~~~~~~g~~~~l~C~~~~~~~--~~~~W~~~~~~~v~~~-------~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~v~~ 72 (86)
T smart00410 2 PSVTVKEGESVTLSCEVSGSPP--PEVTWYKQGGKLLAES-------GRFSVSRSGSNSTLTISNVTPEDSGTYTCAATN 72 (86)
T ss_pred CcEEEeCCCeEEEEEEEccCCC--CeEEEEECCCEEcCCC-------CcEEEEEcCCeeEEEEEeeccccCeEEEEEEEc
Confidence 4567889999999999998844 46689998 7777522 12222 2 36899999999999999999998
Q ss_pred CCCceEEEEEEEE
Q psy12061 164 TVGKISTKTTVIV 176 (626)
Q Consensus 164 ~~g~~~~~~~l~v 176 (626)
..+.....+.|.|
T Consensus 73 ~~~~~~~~~~l~V 85 (86)
T smart00410 73 SSGSASSTTTLTV 85 (86)
T ss_pred CCCeEEEEEEEEE
Confidence 8888777677665
No 238
>cd05713 Ig_MOG_like Immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG). Ig_MOG_like: immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG). MOG, a minor component of the myelin sheath, is an important CNS-specific autoantigen, linked to the pathogenesis of multiple sclerosis (MS) and experimental autoimmune encephalomyelitis (EAE). It is a transmembrane protein having an extracellular Ig domain. MOG is expressed in the CNS on the outermost lamellae of the myelin sheath, and on the surface of oligodendrocytes, and may participate in the completion, compaction, and/or maintenance of myelin. This group also includes butyrophilin (BTN). BTN is the most abundant protein in bovine milk-fat globule membrane (MFGM).
Probab=98.70 E-value=9.1e-08 Score=73.24 Aligned_cols=73 Identities=21% Similarity=0.349 Sum_probs=50.8
Q ss_pred CceEEEEeeeCCCCC---CeeEEEeCC--EEc---------c------CCCcEEEccC------CcEEEccCCCCCCEEE
Q psy12061 5 GGNVTIFCNPEAAPK---PKFVWKKDG--NII---------G------SGGRRKIFEN------GNLLISPVSRDDSGIY 58 (626)
Q Consensus 5 G~~~~l~C~~~g~p~---p~i~W~~~~--~~i---------~------~~~~~~~~~~------g~L~i~~v~~~d~G~Y 58 (626)
|++|+|.|...+... ..|.|+|.. ..+ . -.+|..+..+ .+|.|.+++.+|+|.|
T Consensus 1 G~~v~L~C~~~~~~~~~~~~v~W~k~~~~~~v~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y 80 (100)
T cd05713 1 GEDAELPCHLSPKMSAEHMEVRWFRSQFSPAVHLYRDGQDQYGEQMPEYRGRTELLKDAIAEGSVALRIHNVRASDEGLY 80 (100)
T ss_pred CCcEEEEeEEcCCCCCCeeEEEEEECCCceeEEEEcCCcccccccCccccceEEeecccccCCcEEEEEEcCChhhCEEE
Confidence 889999999864322 278898844 111 1 0135554321 3699999999999999
Q ss_pred EEEEEcCCCCceeeEEEEE
Q psy12061 59 SCTATNVHGMDESKGRLIV 77 (626)
Q Consensus 59 ~C~a~n~~g~~~~~~~l~v 77 (626)
+|.+.|..+.......|.|
T Consensus 81 ~C~v~~~~~~~~~~i~l~v 99 (100)
T cd05713 81 TCFFQSDGFYEEATVELKV 99 (100)
T ss_pred EEEEecCCcEEEEEEEEEE
Confidence 9999987776555666655
No 239
>cd05860 Ig4_SCFR Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR). Ig4_SCFR: The fourth Immunoglobulin (Ig)-like domain in stem cell factor receptor (SCFR). SCFR is organized as an extracellular component having five IG-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR. This fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth domain abolishes the ligand-induced dimerization of SCFR and completely inhibits signal transduction.
Probab=98.69 E-value=2.5e-07 Score=68.02 Aligned_cols=87 Identities=18% Similarity=0.146 Sum_probs=67.4
Q ss_pred CceEEecCCcEEEEEEecccCCcceeEEEeeCCEEeccccCCccCCCee---EecCCeEEEeecCCCCCEeEEEEEEeCC
Q psy12061 89 PKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNI---NIDGGLLEITNASFADAGEYECVVKSTV 165 (626)
Q Consensus 89 ~~~~v~~g~~~~l~C~~~~~p~p~~~i~W~~~~~~~~~~~~~~~~~~~~---~~~~~~l~i~~~~~~d~g~Y~C~a~n~~ 165 (626)
..+.|.+|+++.|.|.+.+.|.|. .+.|.+++..+....- +....+. .-..+.|++..+..+|+|.|+|.|.|..
T Consensus 11 ~~~~v~~gE~~~L~V~ieAYP~p~-~~~W~~~~~~l~~~~~-~~~~~~~~~~~rY~S~L~L~Rlk~~E~G~YTf~a~N~~ 88 (101)
T cd05860 11 TTIFVNAGENLDLIVEYEAYPKPE-HQQWIYMNRTLTNTSD-HYVKSRNESNNRYVSELHLTRLKGTEGGTYTFLVSNSD 88 (101)
T ss_pred ceEEEECCCCEEEEEEEEeCCCCe-eeEEEcCCcccCcccc-ceeEEeccCceEEEEEEEEeecChhhCcEEEEEEECCC
Confidence 457899999999999999999885 4689999887654321 1100110 1144689999999999999999999999
Q ss_pred CceEEEEEEEEe
Q psy12061 166 GKISTKTTVIVE 177 (626)
Q Consensus 166 g~~~~~~~l~v~ 177 (626)
+..+.+..|.|+
T Consensus 89 ~~~s~tF~l~v~ 100 (101)
T cd05860 89 ASASVTFNVYVN 100 (101)
T ss_pred CeEEEEEEEEEe
Confidence 999999988875
No 240
>cd05879 Ig_P0 Immunoglobulin (Ig)-like domain of Protein zero (P0). Ig_P0ex: immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin.
Probab=98.68 E-value=1.3e-07 Score=73.23 Aligned_cols=68 Identities=21% Similarity=0.414 Sum_probs=49.9
Q ss_pred CCCCceEEEEeeeCCC----CCCeeEE---------------EeCCEEcc-C----CCcEEEc-----cCCcEEEccCCC
Q psy12061 2 AGEGGNVTIFCNPEAA----PKPKFVW---------------KKDGNIIG-S----GGRRKIF-----ENGNLLISPVSR 52 (626)
Q Consensus 2 ~~~G~~~~l~C~~~g~----p~p~i~W---------------~~~~~~i~-~----~~~~~~~-----~~g~L~i~~v~~ 52 (626)
|..|++++|.|..... +..+|.| |++|.... . .+|.... .+.+|.|.+++.
T Consensus 10 a~~G~~v~L~C~f~~~~~~~~~~~v~W~~~~~~~~~~~~v~~y~~g~~~~~~~~~f~~Rv~f~g~~~~~daSI~I~nv~~ 89 (116)
T cd05879 10 GTVGSDVTLSCSFWSSEWISDDISFTWHYQPDGSRDAISIFHYGKGQPYIDDVGPFKERIEWVGNPSRKDGSIVIHNLDY 89 (116)
T ss_pred EEcCCcEEEEEEEecCCCCCCcEEEEEEEcCCCCCccEEEEEeCCCceecccccCccCceEEeCCCCcCeeEEEEccCCc
Confidence 5789999999999664 3459999 33444432 1 1466543 334799999999
Q ss_pred CCCEEEEEEEEcCCCCc
Q psy12061 53 DDSGIYSCTATNVHGMD 69 (626)
Q Consensus 53 ~d~G~Y~C~a~n~~g~~ 69 (626)
+|+|.|+|.+.|..+..
T Consensus 90 sD~G~Y~C~v~n~p~~~ 106 (116)
T cd05879 90 TDNGTFTCDVKNPPDIV 106 (116)
T ss_pred ccCEEEEEEEEcCCCcC
Confidence 99999999999876643
No 241
>PF00047 ig: Immunoglobulin domain The Prosite family only concerns antibodies and MHCs.; InterPro: IPR013151 Members of the immunoglobulin superfamily are found in hundreds of proteins of different functions. Examples include antibodies, the giant muscle kinase titin and receptor tyrosine kinases. Immunoglobulin-like domains may be involved in protein-protein and protein-ligand interactions. The Pfam alignments do not include the first and last strand of the immunoglobulin-like domain.; PDB: 1B6U_A 3O4O_C 3VH8_H 1BIH_A 2C9A_A 2V5Y_A 1BQH_K 2ATP_A 3B9K_A 1NEZ_H ....
Probab=98.67 E-value=3.2e-08 Score=68.55 Aligned_cols=59 Identities=27% Similarity=0.476 Sum_probs=42.5
Q ss_pred CCcEEEEEEe-cccCCcceeEEEeeCCEEeccccCCccCCCeeEecCC----eEEEeecCCCCCEeEEEEE
Q psy12061 96 HRNLQLRCSA-HTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGG----LLEITNASFADAGEYECVV 161 (626)
Q Consensus 96 g~~~~l~C~~-~~~p~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~----~l~i~~~~~~d~g~Y~C~a 161 (626)
|++++|.|.+ .+.+. ..+.|.+++..+..... ........ .|.|.+++.+|+|.|+|.|
T Consensus 1 G~~v~L~C~~~~~~~~--~~~~W~~~~~~~~~~~~-----~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~v 64 (64)
T PF00047_consen 1 GSSVTLTCSVSSGPPP--TTVTWSKNGQSLPEGST-----TNRSTNSVSSTSRLTISNVTPEDSGTYTCVV 64 (64)
T ss_dssp TSEEEEEEEEEESSST--SEEEEEETTTTTSEEEE-----EEEEETTTEEEEEEEESSCTGGGTEEEEEEE
T ss_pred CCeEEEEeecCCCCCC--cEEEEEECCccccCcce-----eEeecccceeeeEEEEccCCHHHCEEEEEEC
Confidence 7899999999 34433 47799999887754321 11111222 2999999999999999986
No 242
>cd04983 IgV_TCR_alpha_like Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) alpha chain and similar proteins. IgV_TCR_alpha: immunoglobulin (Ig) variable domain of the alpha chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group represents the variable domain of the alpha chain of TCRs and also includes the variable domain of delta chains of TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide.
Probab=98.67 E-value=6.7e-08 Score=75.51 Aligned_cols=66 Identities=27% Similarity=0.378 Sum_probs=51.0
Q ss_pred CCCCceEEEEeeeCCCCCCeeEEEeCCE---Ec-----------cCCCcEEEccC---C--cEEEccCCCCCCEEEEEEE
Q psy12061 2 AGEGGNVTIFCNPEAAPKPKFVWKKDGN---II-----------GSGGRRKIFEN---G--NLLISPVSRDDSGIYSCTA 62 (626)
Q Consensus 2 ~~~G~~~~l~C~~~g~p~p~i~W~~~~~---~i-----------~~~~~~~~~~~---g--~L~i~~v~~~d~G~Y~C~a 62 (626)
+.+|++|+|.|.+.+.+.+.+.|+|... +. ...+|+.+..+ + +|.|.+++.+|+|.|.|.+
T Consensus 10 ~~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~~~~~DsG~Y~C~~ 89 (109)
T cd04983 10 VQEGENVTLNCNYSTSTFYYLFWYRQYPGQGPQFLIYISSNGEEKEKGRFSATLDKSRKSSSLHISAAQLSDSAVYFCAL 89 (109)
T ss_pred EcCCCCEEEEEEECCCCccEEEEEEECCCCCeEEEEEEecCCCcccCCcEEEEEcccCCEEEEEECCCCHHHCEEEEEEE
Confidence 6789999999999988888999998431 10 12356655432 2 6999999999999999999
Q ss_pred EcCCC
Q psy12061 63 TNVHG 67 (626)
Q Consensus 63 ~n~~g 67 (626)
.+..+
T Consensus 90 ~~~~~ 94 (109)
T cd04983 90 SESGG 94 (109)
T ss_pred ecCCC
Confidence 97643
No 243
>KOG4802|consensus
Probab=98.65 E-value=8.3e-07 Score=80.31 Aligned_cols=209 Identities=20% Similarity=0.212 Sum_probs=118.3
Q ss_pred CCCEeEEEEEEeCCC-ceEEEEEEEEeCCCCCCCceEEEEEeccceEEEEecCCCCCCcccEEEE----------EEeec
Q psy12061 152 ADAGEYECVVKSTVG-KISTKTTVIVEGPPGLPGGVQVVEVHKTSATIQWTDGATNGRPITHYKI----------IARTN 220 (626)
Q Consensus 152 ~d~g~Y~C~a~n~~g-~~~~~~~l~v~~~P~~p~~~~~~~~~~~~~~l~W~~~~~~~~~~~~y~v----------~~~~~ 220 (626)
+-.|+=.|-. |.-| +-...-.+....++.|-..+.......++..+.|...... .+....+ .-+..
T Consensus 118 ECpevqKCcs-sgCgptcqvPktl~k~~~l~Pr~k~~y~r~~~g~~av~w~~~~~~--~v~~~~~~vr~~w~~g~hase~ 194 (516)
T KOG4802|consen 118 ECPEVQKCCS-SGCGPTCQVPKTLYKNTQLPPRPKILYFRRSRGSHAVDWKIESSL--LVYYVHVEVRSHWGRGFHASEL 194 (516)
T ss_pred cCccchhccc-CCCCCceeccccccccCCCCCcchhhhhhhccCceeeeeeecccc--ceeeeehhhhhhhccccccccc
Confidence 4455555533 3333 3344444544444433333444566777889999853221 1111111 11223
Q ss_pred CCCCceEeecceeeeeeeccCCceeEEEEeeccCCceEEEEEEEecCCccCCCCCCCCcccC-CCCCCCCCCceeEeecC
Q psy12061 221 WNSTWFNVSEHVIGKEVDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPSPQYNT-PADKPYQAPSRIGGGGG 299 (626)
Q Consensus 221 ~~~~w~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~y~~~v~a~n~~g~~~~s~~~~~~~~-~~~~p~~~p~~~~~~~~ 299 (626)
+...|+.+.... ........ ++.||..|.|||.|+|..|.-..+.++..+.. ....++.+|.++....+
T Consensus 195 ~~thwQtv~~t~---------~e~~~~~t-~~rPgRwyefrvaavn~~G~rGFs~PSkpf~ssk~pkaPp~P~dl~l~~v 264 (516)
T KOG4802|consen 195 GPTHWQTVEKTM---------EENTYIFT-DMRPGRWYEFRVAAVNAYGFRGFSEPSKPFPSSKNPKAPPSPNDLKLIGV 264 (516)
T ss_pred ccccceeeeecC---------CCceeeee-ecCcceeEEEEEeeeecccccccCCCCCCCCCCCCCCCCcCcccceeeee
Confidence 446677765542 11133443 49999999999999999986666666555543 23334457777776433
Q ss_pred ---CcCeEEEEEeeCCCCCcccCcceEEEEEEecCCCcceeeeeeeecceeeEEEEeCCCcceeEEEEEEEEecCCCCCC
Q psy12061 300 ---KIGDLSISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETLKEYGNVGIAVVRIPSEFYYTEYEVKVQAINDVGPGP 376 (626)
Q Consensus 300 ---~~~~v~l~W~~~~~~~~~~~~~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~p~~~Y~~~v~a~n~~g~~~ 376 (626)
+.-...|.|.|+ ..+-++..|.|.|...-...-..+.....-......+.|++|.|+..|.+.|.|....|.+.
T Consensus 265 ~~dG~~~~~v~w~P~---~sdlPv~~Yki~Ws~~v~s~k~~m~tks~~~k~thq~si~~L~Pns~Y~VevqAi~y~g~~r 341 (516)
T KOG4802|consen 265 QFDGRYMLKVVWCPS---KSDLPVEKYKITWSLYVNSAKASMITKSSYVKDTHQFSIKELLPNSSYYVEVQAISYLGSRR 341 (516)
T ss_pred eecceEEEEEEeCCC---CCCCcceeeEEEeehhhhhhhhhcccccceeeccchhhhhhcCCCCeEEEEEEEEEeccCcc
Confidence 223456788763 45578999999997543111011111100011112344899999999999999998887654
No 244
>cd05900 Ig_Aggrecan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan. Ig_Aggrecan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan. These aggregates contribute to the tissue's load bearing properties. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Aggrecan has a wide distribution in connective tissue and extracellular matrices. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes.
Probab=98.63 E-value=3e-07 Score=70.65 Aligned_cols=75 Identities=19% Similarity=0.290 Sum_probs=53.1
Q ss_pred CCceEEEEeeeCCCC------------CCeeEEEeC--CE---Ecc-C----------CCcEEEcc------CCcEEEcc
Q psy12061 4 EGGNVTIFCNPEAAP------------KPKFVWKKD--GN---IIG-S----------GGRRKIFE------NGNLLISP 49 (626)
Q Consensus 4 ~G~~~~l~C~~~g~p------------~p~i~W~~~--~~---~i~-~----------~~~~~~~~------~g~L~i~~ 49 (626)
.|++|+|.|...... .+.|.|+|- |. .+. . .+|..+.. +.+|.|.+
T Consensus 1 ~G~~VtLpC~~~~~~~~~~~~~~~~~~~~~I~W~k~~~g~~~~ii~~~~~~~~~~~~f~~R~sl~~~~~~~~~asL~I~n 80 (112)
T cd05900 1 LGSSLLIPCYFQDPIAKDPGAPTVAPLSPRIKWSFISKEKESVLLVATEGKVRVNTEYLDRVSLPNYPAIPSDATLEITE 80 (112)
T ss_pred CCCcEEEeeEEeCCcCccccccccCCCCCEEEEEEecCCCccEEEEEECCeEEECccccCeEEecccCCCCCCcEEEEee
Confidence 489999999996542 369999983 21 111 0 14655543 33799999
Q ss_pred CCCCCCEEEEEEEEcCCCCceeeEEEEEE
Q psy12061 50 VSRDDSGIYSCTATNVHGMDESKGRLIVL 78 (626)
Q Consensus 50 v~~~d~G~Y~C~a~n~~g~~~~~~~l~v~ 78 (626)
++.+|+|.|+|.+.++.........|.|.
T Consensus 81 l~~sDsG~Y~C~V~~g~~~~~~~v~l~v~ 109 (112)
T cd05900 81 LRSNDSGTYRCEVMHGIEDNYDTVEVQVK 109 (112)
T ss_pred cccccCEEEEEEEecCCCCceeEEEEEEE
Confidence 99999999999999665555555666653
No 245
>cd00099 IgV Immunoglobulin variable domain (IgV). IgV: Immunoglobulin variable domain (IgV). Members of the IgV family are components of immunoglobulin (Ig) and T cell receptors. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. Within the variable domain, there are regions of even more variability called the hypervariable or complementarity-determining regions (CDRs) which are responsible for antigen binding. A predominant feature of most Ig domains is the disulfide bridge connecting 2 beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=98.63 E-value=9.1e-08 Score=74.26 Aligned_cols=66 Identities=26% Similarity=0.491 Sum_probs=50.2
Q ss_pred CCCCceEEEEeeeCCC-CCCeeEEEeCCE-----Ec------------cCCCcEEEccC---C--cEEEccCCCCCCEEE
Q psy12061 2 AGEGGNVTIFCNPEAA-PKPKFVWKKDGN-----II------------GSGGRRKIFEN---G--NLLISPVSRDDSGIY 58 (626)
Q Consensus 2 ~~~G~~~~l~C~~~g~-p~p~i~W~~~~~-----~i------------~~~~~~~~~~~---g--~L~i~~v~~~d~G~Y 58 (626)
|.+|++|+|.|.+.+. +...+.|+|... .| ...+|+.+..+ + +|.|.+++.+|+|.|
T Consensus 3 v~~G~~v~L~C~~~~~~~~~~v~W~k~~~~~~~~~i~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~I~~v~~~D~G~Y 82 (105)
T cd00099 3 VSEGESVTLSCTYSGSFSSYYIFWYRQKPGKGPELLIYISSNGSQYAGGVKGRFSGTRDSSKSSFTLTISSLQPEDSAVY 82 (105)
T ss_pred ecCCCCEEEEEEEeCCcCcceEEEEEECCCCCCEEEEEEeCCCCccCccCCCcEEEEEeccCCEEEEEECCCCHHHCEEE
Confidence 6799999999999876 667999998432 11 11245554433 2 699999999999999
Q ss_pred EEEEEcCCC
Q psy12061 59 SCTATNVHG 67 (626)
Q Consensus 59 ~C~a~n~~g 67 (626)
.|.+.+..+
T Consensus 83 ~C~v~~~~~ 91 (105)
T cd00099 83 YCAVSLSGG 91 (105)
T ss_pred EEEEecCCC
Confidence 999997765
No 246
>cd05885 Ig2_Necl-4 Second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4)). Ig2_Necl-4: second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1-Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Ig domains are likely to participate in ligand binding and recognition. Necl-4 is expressed on Schwann cells, and plays a key part in initiating peripheral nervous system (PNS) myelination. In injured peripheral nerve cells, the mRNA signal for both Necl-4 and Necl-5 was observed to be elevated. Necl-4 participates in cell-cell adhesion and is proposed to play a role in tumor suppression.
Probab=98.61 E-value=3.6e-07 Score=64.61 Aligned_cols=69 Identities=7% Similarity=0.092 Sum_probs=49.5
Q ss_pred cEEEEEEecccCCcceeEEEeeCCEEeccccCCccCCCeeEecCCeEEEeecCCCCCEeEEEEEEeCCCce
Q psy12061 98 NLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEITNASFADAGEYECVVKSTVGKI 168 (626)
Q Consensus 98 ~~~l~C~~~~~p~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~a~n~~g~~ 168 (626)
.++|.|...+.-++ .+|.|+||++++........ .++.....+.|.|......|.+.|+|.|.|..+..
T Consensus 1 ~~~L~C~s~~skP~-a~i~W~k~~~~l~~~~~~~~-~~~~~t~~s~L~~~~~~~Ddg~~~~C~A~n~a~~~ 69 (80)
T cd05885 1 EVELTCLSPRSKPA-ATLRWYRDRKELKGVISQQE-NGKTVSVSNTIRFPVDRKDDGAILSCEASHPALVS 69 (80)
T ss_pred CEEEEEeCCCccCC-CeEEEEECCEECCCCccccc-CCceEEEEEEEEEEeeeccCCcEEEEEEEChhhCC
Confidence 37899998875433 36799999999965321111 12222245679999999999999999999988753
No 247
>PF13927 Ig_3: Immunoglobulin domain; PDB: 2D3V_A 1G0X_A 1VDG_A 1P7Q_D 3D2U_H 1UFU_A 1UGN_A 3VH8_H 3OQ3_B 4DKD_C ....
Probab=98.60 E-value=2.7e-08 Score=71.81 Aligned_cols=59 Identities=37% Similarity=0.695 Sum_probs=42.4
Q ss_pred ceEEEEeeeCCCC-CCeeEEEeCCEEccCCCcEEEccCCcEEEccCCCCCCEEEEEEEEc
Q psy12061 6 GNVTIFCNPEAAP-KPKFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTATN 64 (626)
Q Consensus 6 ~~~~l~C~~~g~p-~p~i~W~~~~~~i~~~~~~~~~~~g~L~i~~v~~~d~G~Y~C~a~n 64 (626)
..++|.|.+.+.| .+.+.|+..........+.....++.|.|.++..+|.|.|+|+|.|
T Consensus 16 ~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~L~i~~v~~~~~g~y~C~a~N 75 (75)
T PF13927_consen 16 GSVTLTCSAEGGPPPPSISWYDSNPSFNSNSRGSSSSNSTLTISNVTRSDNGTYTCIASN 75 (75)
T ss_dssp EEEEEEEEESSEESSEEEEEETEEEEEEEEEEEEEEEEEEEEESSCCGGGTEEEEEEEEE
T ss_pred eeEEEEEEEccccCCeEEEEEecCCceeeeeeeccceeeEEEEccCCHHhCcEEEEEEEC
Confidence 3499999999987 7799999111111111222233355799999999999999999987
No 248
>cd05878 Ig_Aggrecan_like Immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG). Ig_Aggrecan_like: immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG)s. Included in this group are the Ig domains of other CSPGs: versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substi
Probab=98.59 E-value=4e-07 Score=70.35 Aligned_cols=75 Identities=24% Similarity=0.378 Sum_probs=54.3
Q ss_pred CCceEEEEeeeCCCC----------CCeeEEEeC--CEEcc--------------CCCcEEEcc------CCcEEEccCC
Q psy12061 4 EGGNVTIFCNPEAAP----------KPKFVWKKD--GNIIG--------------SGGRRKIFE------NGNLLISPVS 51 (626)
Q Consensus 4 ~G~~~~l~C~~~g~p----------~p~i~W~~~--~~~i~--------------~~~~~~~~~------~g~L~i~~v~ 51 (626)
.|++|+|.|.....+ ...|.|+|. +..+. -.+|..+.. +.+|+|.+++
T Consensus 1 ~G~~V~LpC~~~~~~~~~~~~~~~~~~~i~W~k~~~~~~~~v~~~~~~~~~~~~~f~gR~~~~~~~~~~~~asL~I~~l~ 80 (110)
T cd05878 1 LSSSVLLPCYFTLPPALPPPSNAPESPRIKWTKLSGQKEVTVLVAQDGVVKVGQEYQGRVSLPNYPENRGDASLEISRLR 80 (110)
T ss_pred CCCCEEEeeEeeCCccccccccCCCCCEEEEEEecCCCcEEEEEEECCEEEecccccCeEEeccCCCCCCcEEEEECCCC
Confidence 389999999997654 257999994 22110 014555532 2369999999
Q ss_pred CCCCEEEEEEEEcCCCCceeeEEEEEE
Q psy12061 52 RDDSGIYSCTATNVHGMDESKGRLIVL 78 (626)
Q Consensus 52 ~~d~G~Y~C~a~n~~g~~~~~~~l~v~ 78 (626)
.+|+|.|.|.+............|.|.
T Consensus 81 ~sD~G~Y~C~v~~~~~~~~~~v~l~V~ 107 (110)
T cd05878 81 SSDSGVYRCEVMHGIEDEQDTVPLEVT 107 (110)
T ss_pred hhhCEEEEEEEEeCCCcceEEEEEEEE
Confidence 999999999999876666777777774
No 249
>cd05718 Ig1_PVR_like First immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins. Ig1_PVR_like: domain similar to the first immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), that result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane, may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus "c
Probab=98.59 E-value=2.6e-07 Score=70.46 Aligned_cols=72 Identities=24% Similarity=0.375 Sum_probs=51.8
Q ss_pred ceEEEEeeeCCCC---CCeeEEEeCCE----Ec-----------cC--CCcEEEcc----CCcEEEccCCCCCCEEEEEE
Q psy12061 6 GNVTIFCNPEAAP---KPKFVWKKDGN----II-----------GS--GGRRKIFE----NGNLLISPVSRDDSGIYSCT 61 (626)
Q Consensus 6 ~~~~l~C~~~g~p---~p~i~W~~~~~----~i-----------~~--~~~~~~~~----~g~L~i~~v~~~d~G~Y~C~ 61 (626)
++|+|.|.....+ ...|.|+|... .+ .. .+|..+.. +.+|.|.+++.+|+|.|.|.
T Consensus 1 ~~v~L~C~~~~~~~~~~~~v~W~k~~~~~~~~i~~~~~~~~~~~~~~~~~R~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~ 80 (98)
T cd05718 1 ESVTLECSFPVPGPVQITQVTWMKITGGSKQNIAVFHPQYGISIPPSYEGRVSFLNSSLEDATISISNLRLEDEGNYICE 80 (98)
T ss_pred CCEEEEeEeeCCCCceEEEEEEeeECCCCCEEEEEEecCCCcccCcCcCceEEEeCCCCCceEEEEccCCcccCEEEEEE
Confidence 5799999997754 34899999442 11 11 23443332 34799999999999999999
Q ss_pred EEc-CCCCceeeEEEEE
Q psy12061 62 ATN-VHGMDESKGRLIV 77 (626)
Q Consensus 62 a~n-~~g~~~~~~~l~v 77 (626)
+.+ ..|...+...|.|
T Consensus 81 v~~~~~g~~~~~~~l~V 97 (98)
T cd05718 81 FATFPQGNRQKVTTLTV 97 (98)
T ss_pred EEeCCCCcEEEEEEEEe
Confidence 975 5677777777776
No 250
>cd05899 IgV_TCR_beta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) bet a chain. IgV_TCR_beta: immunoglobulin (Ig) variable domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the alpha chain of alpha/beta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide.
Probab=98.56 E-value=2.4e-07 Score=72.22 Aligned_cols=64 Identities=20% Similarity=0.397 Sum_probs=48.2
Q ss_pred CCCCceEEEEeeeCCCCCCeeEEEeCC--EEcc----------------CCCcEEEccC----CcEEEccCCCCCCEEEE
Q psy12061 2 AGEGGNVTIFCNPEAAPKPKFVWKKDG--NIIG----------------SGGRRKIFEN----GNLLISPVSRDDSGIYS 59 (626)
Q Consensus 2 ~~~G~~~~l~C~~~g~p~p~i~W~~~~--~~i~----------------~~~~~~~~~~----g~L~i~~v~~~d~G~Y~ 59 (626)
|.+|++|+|.|.+.+ +.+.+.|||.. ..+. ..+|+.+..+ -+|.|.+++.+|+|.|.
T Consensus 10 v~~G~~v~l~C~~~~-~~~~v~Wykq~~g~~~~~l~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~~~~~Dsg~Y~ 88 (110)
T cd05899 10 KGRGQSVTLRCSQTS-GHDNMYWYRQDPGKGLQLLFYSNGGSLNEEEGDPKDRFSASRPSLTRSSLTIKSAEPEDSAVYL 88 (110)
T ss_pred EcCCCcEEEEEEECC-CCCEEEEEEECCCCCcEEEEEEcCCCceEecCccCCceEEECcCCCccEEEECCCChhhCEEEE
Confidence 679999999999988 77899999942 1110 1245544332 25999999999999999
Q ss_pred EEEEcCC
Q psy12061 60 CTATNVH 66 (626)
Q Consensus 60 C~a~n~~ 66 (626)
|.+.+..
T Consensus 89 Ca~~~~~ 95 (110)
T cd05899 89 CASSLGG 95 (110)
T ss_pred EEeeCCC
Confidence 9998754
No 251
>cd00063 FN3 Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all animal proteins contain the FN3 repeat; including extracellular and intracellular proteins, membrane spanning cytokine receptors, growth hormone receptors, tyrosine phosphatase receptors, and adhesion molecules. FN3-like domains are also found in bacterial glycosyl hydrolases.
Probab=98.56 E-value=1.1e-06 Score=66.28 Aligned_cols=83 Identities=29% Similarity=0.564 Sum_probs=62.5
Q ss_pred CCceEEEeeeCCCEEEEEEeecCCCCCCCceeeEEEEEEEeccCCccccceeeec--CccceEEecCCCCCceEEEEEEE
Q psy12061 496 PPSAVHIKGINPTTVHVTWRYVSPSFEEEPIIGYKVRVWEVDQDMSRANDTIIPV--GNTLDADIVDLSPGKRYHMRVLA 573 (626)
Q Consensus 496 ~p~~l~~~~~~~~~~~l~W~~~~~~~~~~~i~~Y~i~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~L~p~~~Y~~~V~a 573 (626)
+|.++.+......++.|.|++ +...++.+.+|.|.+...... ....... .....+.+.+|.|++.|.|+|+|
T Consensus 3 ~p~~~~~~~~~~~~~~v~W~~--~~~~~~~~~~y~v~~~~~~~~----~~~~~~~~~~~~~~~~i~~l~p~~~Y~~~v~a 76 (93)
T cd00063 3 PPTNLRVTDVTSTSVTLSWTP--PEDDGGPITGYVVEYREKGSG----DWKEVEVTPGSETSYTLTGLKPGTEYEFRVRA 76 (93)
T ss_pred CCCCcEEEEecCCEEEEEECC--CCCCCCcceeEEEEEeeCCCC----CCEEeeccCCcccEEEEccccCCCEEEEEEEE
Confidence 566788877788999999994 444446778999988765411 1122222 36788999999999999999999
Q ss_pred EecCCCCCCCC
Q psy12061 574 FSNGGDGRMSS 584 (626)
Q Consensus 574 ~~~~G~g~~s~ 584 (626)
.+..|.|.++.
T Consensus 77 ~~~~~~~~~s~ 87 (93)
T cd00063 77 VNGGGESPPSE 87 (93)
T ss_pred ECCCccCCCcc
Confidence 99999888775
No 252
>cd04980 IgV_L_kappa Immunoglobulin (Ig) light chain, kappa type, variable (V) domain. IgV_L_kappa: Immunoglobulin (Ig) light chain, kappa type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.
Probab=98.56 E-value=2.6e-07 Score=71.49 Aligned_cols=64 Identities=22% Similarity=0.384 Sum_probs=47.1
Q ss_pred CCCCceEEEEeeeCCCC-CCeeEEEeCC--EE---cc---------CCCcEEEccCC---cEEEccCCCCCCEEEEEEEE
Q psy12061 2 AGEGGNVTIFCNPEAAP-KPKFVWKKDG--NI---IG---------SGGRRKIFENG---NLLISPVSRDDSGIYSCTAT 63 (626)
Q Consensus 2 ~~~G~~~~l~C~~~g~p-~p~i~W~~~~--~~---i~---------~~~~~~~~~~g---~L~i~~v~~~d~G~Y~C~a~ 63 (626)
|.+|++|+|.|.+.+.. ...+.|+|.. .. |. ...|+.+..++ +|.|.+++.+|+|.|.|.+.
T Consensus 12 v~~G~~v~L~C~~~~~~~~~~~~Wyrq~~g~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~~~~~Dsg~Y~Ca~~ 91 (106)
T cd04980 12 VSPGESATISCKASQSVSSNYLAWYQQKPGQAPKLLIYGASTLASGTPSRFSGSGSGTDFTLTISRVEPEDAAVYYCQQY 91 (106)
T ss_pred ECCCCCEEEEEEECCCCCCCcEEEEEECCCCCcEEEEECccccCCCCCCCEEEeccCCEEEEEECCCChHHCEEEEEEEe
Confidence 67999999999998765 5689999832 11 11 12345543332 59999999999999999997
Q ss_pred cC
Q psy12061 64 NV 65 (626)
Q Consensus 64 n~ 65 (626)
+.
T Consensus 92 ~~ 93 (106)
T cd04980 92 GT 93 (106)
T ss_pred CC
Confidence 64
No 253
>cd04984 IgV_L_lambda Immunoglobulin (Ig) lambda light chain variable (V) domain. IgV_L_lambda: Immunoglobulin (Ig) light chain, lambda type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.
Probab=98.53 E-value=6e-07 Score=68.23 Aligned_cols=64 Identities=22% Similarity=0.297 Sum_probs=47.4
Q ss_pred CCCCceEEEEeeeCCC--CCCeeEEEeCC---EE--cc---------CCCcEEEccCC---cEEEccCCCCCCEEEEEEE
Q psy12061 2 AGEGGNVTIFCNPEAA--PKPKFVWKKDG---NI--IG---------SGGRRKIFENG---NLLISPVSRDDSGIYSCTA 62 (626)
Q Consensus 2 ~~~G~~~~l~C~~~g~--p~p~i~W~~~~---~~--i~---------~~~~~~~~~~g---~L~i~~v~~~d~G~Y~C~a 62 (626)
|.+|++|+|.|.+.+. ....+.|+|.. .+ |. ..+|+.+..++ +|.|.+++.+|+|.|.|.+
T Consensus 3 v~~G~~v~l~C~~~~~~~~~~~i~Wy~q~~g~~~~~l~~~~~~~~~~~~~rf~~~~~~~~~~L~I~~~~~~Dsg~Y~C~~ 82 (98)
T cd04984 3 VSPGETVTITCTGSSGNISGNYVNWYQQKPGSAPRYLIYEDSDRPSGIPDRFSGSKSGNTASLTISGAQTEDEADYYCQV 82 (98)
T ss_pred cCCCCCEEEEEEEcCCCcCCCCEEEEEECCCCCccEEEEeccccCCCCCCCEEEEccCCEEEEEECCCChhhCEEEEEEE
Confidence 7899999999999775 45689999822 21 10 12355554443 5999999999999999999
Q ss_pred EcC
Q psy12061 63 TNV 65 (626)
Q Consensus 63 ~n~ 65 (626)
.+.
T Consensus 83 ~~~ 85 (98)
T cd04984 83 WDS 85 (98)
T ss_pred ccC
Confidence 754
No 254
>cd05761 Ig2_Necl-1-4_like Second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-4 (also known as cell adhesion molecules CADM3, CADM1, CADM2, and CADM4, respectively). Ig2_Necl-1-4_like: domain similar to the second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), Necl-3 (CADM2) and Necl-4 (CADM4). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cel
Probab=98.52 E-value=6.5e-07 Score=65.12 Aligned_cols=62 Identities=15% Similarity=0.213 Sum_probs=44.2
Q ss_pred eEEEEeeeCCC-CCCeeEEEeCCEEccCCCcEEEc-cCC------cEEEccCCCCCCEEEEEEEEcCCCC
Q psy12061 7 NVTIFCNPEAA-PKPKFVWKKDGNIIGSGGRRKIF-ENG------NLLISPVSRDDSGIYSCTATNVHGM 68 (626)
Q Consensus 7 ~~~l~C~~~g~-p~p~i~W~~~~~~i~~~~~~~~~-~~g------~L~i~~v~~~d~G~Y~C~a~n~~g~ 68 (626)
.+.|.|.+.|. |.++|+|+|+|.+|......... .+| .|.+.....+|.+.|+|.|.|....
T Consensus 1 ~~~L~C~~~~~~P~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~s~l~~~~~~~d~g~~~~C~v~h~~l~ 70 (82)
T cd05761 1 EVELTCTSSGSKPAATIRWFKGDKELKGVKLKEEDENGKTFTVTSSLRFQVDREDDGAPIICRVDHPALK 70 (82)
T ss_pred CEEEEEEecCcCcCCeEEEEECCEEccCceeeEecCCCCEEEEEEEEEEEcchhhCCCEEEEEEeChhcC
Confidence 37899999776 88999999999998643322222 222 3555555566778999999987654
No 255
>cd05879 Ig_P0 Immunoglobulin (Ig)-like domain of Protein zero (P0). Ig_P0ex: immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin.
Probab=98.52 E-value=1.5e-06 Score=67.40 Aligned_cols=79 Identities=20% Similarity=0.362 Sum_probs=53.5
Q ss_pred CCceEEecCCcEEEEEEecccC--CcceeEEEee---------------CCEEeccccCCccCCCeeE------ecCCeE
Q psy12061 88 PPKITIAAHRNLQLRCSAHTEE--LLDVAYIWTH---------------NGVRIGNMDLNELETPNIN------IDGGLL 144 (626)
Q Consensus 88 ~~~~~v~~g~~~~l~C~~~~~p--~p~~~i~W~~---------------~~~~~~~~~~~~~~~~~~~------~~~~~l 144 (626)
+..+.+..|++++|.|...... .+.+++.|.. +|...... +. .-..|+. ..+.+|
T Consensus 5 ~~ev~a~~G~~v~L~C~f~~~~~~~~~~~v~W~~~~~~~~~~~~v~~y~~g~~~~~~-~~-~f~~Rv~f~g~~~~~daSI 82 (116)
T cd05879 5 DREVYGTVGSDVTLSCSFWSSEWISDDISFTWHYQPDGSRDAISIFHYGKGQPYIDD-VG-PFKERIEWVGNPSRKDGSI 82 (116)
T ss_pred cceEEEEcCCcEEEEEEEecCCCCCCcEEEEEEEcCCCCCccEEEEEeCCCceeccc-cc-CccCceEEeCCCCcCeeEE
Confidence 5677899999999999997743 2456889933 22222100 00 0012433 245689
Q ss_pred EEeecCCCCCEeEEEEEEeCCCce
Q psy12061 145 EITNASFADAGEYECVVKSTVGKI 168 (626)
Q Consensus 145 ~i~~~~~~d~g~Y~C~a~n~~g~~ 168 (626)
.|.+++.+|.|.|+|.+.|.-+..
T Consensus 83 ~I~nv~~sD~G~Y~C~v~n~p~~~ 106 (116)
T cd05879 83 VIHNLDYTDNGTFTCDVKNPPDIV 106 (116)
T ss_pred EEccCCcccCEEEEEEEEcCCCcC
Confidence 999999999999999999876643
No 256
>cd05877 Ig_LP_like Immunoglobulin (Ig)-like domain of human cartilage link protein (LP). Ig_LP_like: immunoglobulin (Ig)-like domain similar to that that found in human cartilage link protein (LP). In cartilage, chondroitin-keratan sulfate proteoglycan (CSPG), aggrecan, forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes.
Probab=98.51 E-value=8.8e-07 Score=68.59 Aligned_cols=84 Identities=20% Similarity=0.261 Sum_probs=57.9
Q ss_pred cCCcEEEEEEecccC----CcceeEEEeeCCE----E---e-cccc---CCccCCCeeEec-----CCeEEEeecCCCCC
Q psy12061 95 AHRNLQLRCSAHTEE----LLDVAYIWTHNGV----R---I-GNMD---LNELETPNINID-----GGLLEITNASFADA 154 (626)
Q Consensus 95 ~g~~~~l~C~~~~~p----~p~~~i~W~~~~~----~---~-~~~~---~~~~~~~~~~~~-----~~~l~i~~~~~~d~ 154 (626)
.|++++|.|.....| .....|.|+|... . + .... ....-..|+... ..+|+|.+++.+|+
T Consensus 1 ~G~~vtL~C~~~~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~sL~I~~v~~~Ds 80 (106)
T cd05877 1 RGGNVTLPCRYHYEPELSAPRKIRVKWTKLESDYLKEEDVLVAIGTRHKSYGSYQGRVFLRRAHDLDASLVITDLRLEDY 80 (106)
T ss_pred CCCcEEEEeEeECCCcCCCCccceEEEEEecCCCCeeEEEEEEcCcEEEeccCccCcEEecCCCCCcEEEEEccCChHHC
Confidence 489999999988764 3345689998531 1 1 1000 000012344432 34899999999999
Q ss_pred EeEEEEEEeCCCceEEEEEEEEeC
Q psy12061 155 GEYECVVKSTVGKISTKTTVIVEG 178 (626)
Q Consensus 155 g~Y~C~a~n~~g~~~~~~~l~v~~ 178 (626)
|.|+|.+.+..+.....+.|.|.+
T Consensus 81 G~Y~C~v~~~~~~~~~~~~l~v~~ 104 (106)
T cd05877 81 GRYRCEVIDGLEDESVVVALRLRG 104 (106)
T ss_pred EEEEEEEEecccceEEEEEEEEEE
Confidence 999999999999888888888764
No 257
>cd05774 Ig_CEACAM_D1 First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM). IG_CEACAM_D1: immunoglobulin (Ig)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the D
Probab=98.49 E-value=1.8e-06 Score=65.42 Aligned_cols=85 Identities=19% Similarity=0.119 Sum_probs=56.2
Q ss_pred CceEEecCCcEEEEEEecccCCcceeEEEeeCCE-----Eeccc-------cCCccCCCeeEe-cCCeEEEeecCCCCCE
Q psy12061 89 PKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGV-----RIGNM-------DLNELETPNINI-DGGLLEITNASFADAG 155 (626)
Q Consensus 89 ~~~~v~~g~~~~l~C~~~~~p~p~~~i~W~~~~~-----~~~~~-------~~~~~~~~~~~~-~~~~l~i~~~~~~d~g 155 (626)
....+.+|+++.|.|... |.....+.|+|... .+... .....-..|..+ .+++|.|.+++.+|+|
T Consensus 6 ~p~~~~~G~~V~L~v~~~--p~~~~~~~W~kg~~~~~~~~I~~y~~~~~~~~~gp~~~gR~~~~~ngSL~I~~v~~~D~G 83 (105)
T cd05774 6 VPPQVAEGENVLLLVHNL--PENLLAYAWYKGKTVSPNFLIASYIISTNSSTPGPAYSGRETIYPNGSLLIQNVTQKDTG 83 (105)
T ss_pred cCCcccCCCCEEEEecCC--CCCceEEEEEcCCCCCCCEEEEEEECCCcccccCcccCCcEEEeCCCcEEEecCCcccCE
Confidence 344678999999999654 44446789999632 11110 000011344443 5689999999999999
Q ss_pred eEEEEEEeCCC-ceEEEEEEE
Q psy12061 156 EYECVVKSTVG-KISTKTTVI 175 (626)
Q Consensus 156 ~Y~C~a~n~~g-~~~~~~~l~ 175 (626)
.|+|.+.+... ..+..+.|.
T Consensus 84 ~Y~~~v~~~~~~~~~~~v~l~ 104 (105)
T cd05774 84 FYTLQTITTNFQVEQATVHLQ 104 (105)
T ss_pred EEEEEEEeCCccEEEEEEEEE
Confidence 99999998774 445555554
No 258
>PF10179 DUF2369: Uncharacterised conserved protein (DUF2369); InterPro: IPR019326 This is a proline-rich region of a group of proteins found from plants to fungi. The function is largely unknown, although the entry contains Fibronectin type-III domain-containing protein C4orf31, which promotes matrix assembly and cell adhesiveness.
Probab=98.49 E-value=7.9e-05 Score=67.09 Aligned_cols=124 Identities=20% Similarity=0.328 Sum_probs=75.0
Q ss_pred ceEEEeCCccCceEEEEEEEeeCCCCCCCCccEE-EeecCC---CCCCCCceEEEeee----CCCEEEEEEeecCCCCCC
Q psy12061 452 NWALIVGLQPDTKYYVKVMAYNNAGEGPESERYL-ERTYRK---APQKPPSAVHIKGI----NPTTVHVTWRYVSPSFEE 523 (626)
Q Consensus 452 ~~~~i~~L~p~t~Y~v~V~a~~~~g~s~~s~~~~-~~t~~~---~p~~~p~~l~~~~~----~~~~~~l~W~~~~~~~~~ 523 (626)
.++.+.++.|+..|.+++.+.+.... ..+.-+. ..|... .| ..|.+..+... +.++++|.|.+ ..+..
T Consensus 128 ~~f~l~~~~~g~~Yliri~~~~~~e~-~~~~kV~aast~~~~~~~P-~LP~d~~Ik~f~~lrtC~SvTIAW~~--s~d~~ 203 (300)
T PF10179_consen 128 RHFRLSGVKPGERYLIRIQISNSDEG-PSTFKVQAASTNPSKQPYP-QLPDDTSIKEFNKLRTCNSVTIAWLG--SPDRS 203 (300)
T ss_pred EEEEECCCCCCCeEEEEEEccCCCCC-ceEEEEEEecCCcccCCCC-CCCCCCceeEEcCCcccceEEEEEec--CCCCC
Confidence 45889999999999999988765432 2222222 333332 23 35777777554 46899999994 22222
Q ss_pred CceeeEEEEEEEeccC--------C---cc------ccc-eee-----------ecCccceEEecCCCCCceEEEEEEEE
Q psy12061 524 EPIIGYKVRVWEVDQD--------M---SR------AND-TII-----------PVGNTLDADIVDLSPGKRYHMRVLAF 574 (626)
Q Consensus 524 ~~i~~Y~i~~~~~~~~--------~---~~------~~~-~~~-----------~~~~~~~~~l~~L~p~~~Y~~~V~a~ 574 (626)
..|=|+.+..... . .. ..+ ..- ........+|.||+||+.|.|.|.+.
T Consensus 204 ---~kYCvy~~~~~~~~~~~~~~~~~n~C~~~~sr~k~e~v~Ck~~~~~n~~~~~~~~v~tetI~~L~PG~~Yl~dV~~~ 280 (300)
T PF10179_consen 204 ---IKYCVYRREEHSNYQERSVSRMPNQCLGPESRKKSEKVLCKYFHSPNSSEDPQRAVTTETIKGLKPGTTYLFDVYVN 280 (300)
T ss_pred ---ceEEEEEEEecCchhhhhhcccCccCCCCCccccceEEEEEEEcCCccccccccccceeecccCCCCcEEEEEEEEe
Confidence 3577755544332 0 00 000 000 11122455799999999999999998
Q ss_pred ecCCCCCC
Q psy12061 575 SNGGDGRM 582 (626)
Q Consensus 575 ~~~G~g~~ 582 (626)
-..|.+-+
T Consensus 281 ~~~G~sl~ 288 (300)
T PF10179_consen 281 GPSGQSLP 288 (300)
T ss_pred cCCCceee
Confidence 87776543
No 259
>cd05755 Ig2_ICAM-1_like Second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins. Ig2_ ICAM-1_like: domain similar to the second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54). During the inflammation process, these molecules recruit leukocytes onto the vascular endothelium before extravasation to the injured tissues. ICAM-1 may be involved in organ targeted tumor metastasis. The interaction of ICAM-1 with leukocyte function-associated antigen-1 (LFA-1) plays a part in leukocyte-endothelial cell recognition. This group also contains ICAM-2, which also interacts with LFA-1. Transmigration of immature dendritic cells across resting endothelium is dependent on the interaction of ICAM-2 with, yet unidentified, ligand(s) on the dendritic cells. ICAM-1 has five Ig-like domains and ICAM-2 has two. ICAM-1 may also act as host receptor for viruses and parasites.
Probab=98.47 E-value=5.5e-07 Score=66.82 Aligned_cols=68 Identities=15% Similarity=0.241 Sum_probs=47.3
Q ss_pred CCCCCceEEEEeeeCCC-CCCe--eEEEeCCEEccCCCcEE-----EccCCcEEEccCCCCCCEEEEEEEEcCCCC
Q psy12061 1 YAGEGGNVTIFCNPEAA-PKPK--FVWKKDGNIIGSGGRRK-----IFENGNLLISPVSRDDSGIYSCTATNVHGM 68 (626)
Q Consensus 1 ~~~~G~~~~l~C~~~g~-p~p~--i~W~~~~~~i~~~~~~~-----~~~~g~L~i~~v~~~d~G~Y~C~a~n~~g~ 68 (626)
++.+|+.++|.|.+.|. |.+. |.|||++..|....... .....+|.|..-..+|...|+|.|.+..+.
T Consensus 12 ~~~eG~~~tL~C~v~g~~P~a~L~i~W~rG~~~l~~~~~~~~~~~~~~~~stlt~~~~r~D~g~~~sC~A~l~l~~ 87 (100)
T cd05755 12 WQPVGKNYTLQCDVPGVAPRQNLTVVLLRGNETLSRQPFGDNTKSPVNAPATITITVDREDHGANFSCETELDLRP 87 (100)
T ss_pred cccCCCcEEEEEEEcCcCCCCcEEEEEeeCCEEcccceeccccCCCceeEEEEEEecchhhCCcEEEEEEEeccCc
Confidence 46899999999999775 7776 79999999996421110 001124777644444445899999987665
No 260
>cd05714 Ig_CSPGs_LP Immunoglobulin (Ig)-like domain of chondroitin sulfate proteoglycans (CSPGs), human cartilage link protein (LP) and similar proteins. Ig_CSPGs_LP: immunoglobulin (Ig)-like domain similar to that found in chondroitin sulfate proteoglycans (CSPGs) and human cartilage link protein (LP). Included in this group are the CSPGs aggrecan, versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue.
Probab=98.47 E-value=1.2e-06 Score=67.77 Aligned_cols=84 Identities=20% Similarity=0.254 Sum_probs=57.8
Q ss_pred cCCcEEEEEEecccC----CcceeEEEeeCC-----E-Eec--cccC---CccCCCeeEe-----cCCeEEEeecCCCCC
Q psy12061 95 AHRNLQLRCSAHTEE----LLDVAYIWTHNG-----V-RIG--NMDL---NELETPNINI-----DGGLLEITNASFADA 154 (626)
Q Consensus 95 ~g~~~~l~C~~~~~p----~p~~~i~W~~~~-----~-~~~--~~~~---~~~~~~~~~~-----~~~~l~i~~~~~~d~ 154 (626)
.|++++|.|.....+ .....|.|+|.. . .+. .... ......|... .+.+|+|.+++.+|+
T Consensus 1 ~G~~V~L~C~~~~~~~~~~~~~~~i~W~k~~~~~~~~~~v~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~~v~~sD~ 80 (106)
T cd05714 1 LGGNVTLPCRFHLEPALSAPHGPRIKWTKLESDGAKEVDVLVAIGGRVKVYGSGRVRVPLYPADPGDASLVITDLRLEDS 80 (106)
T ss_pred CCCCEEEeEEeECCcccCCCCCcEEEEEEeCCCCCceEEEEEEcCCEEEEcCCCceEEEeeCCCCCcceEEECCCCHHHC
Confidence 489999999998764 224578999862 1 111 1100 0011122222 456899999999999
Q ss_pred EeEEEEEEeCCCceEEEEEEEEeC
Q psy12061 155 GEYECVVKSTVGKISTKTTVIVEG 178 (626)
Q Consensus 155 g~Y~C~a~n~~g~~~~~~~l~v~~ 178 (626)
|.|+|.+.+..+.....+.|.|.+
T Consensus 81 G~Y~C~v~~~~~~~~~~v~L~V~~ 104 (106)
T cd05714 81 GRYRCEVIDGIEDEQDTVELEVRG 104 (106)
T ss_pred EEEEEEEEcCCCceEEEEEEEEEE
Confidence 999999999888888888888864
No 261
>cd05846 Ig1_MRC-OX-2_like First immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200) and similar proteins. Ig1_ MRC-OX-2_like: domain similar to the first immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200). MRC OX-2 is a membrane glycoprotein expressed in a variety of lymphoid and non-lymphoid cells in rats. It has a similar broad distribution pattern in humans. MRC OX-2 may regulate myeloid cell activity. The protein has an extracellular portion containing two Ig-like domains, a transmembrane portion, and a cytoplasmic portion.
Probab=98.47 E-value=1.3e-06 Score=66.06 Aligned_cols=73 Identities=30% Similarity=0.451 Sum_probs=51.0
Q ss_pred CceEEEEeeeCCCCCC-eeEEEeCCE----Ecc---C----------CCcEEEcc----CCcEEEccCCCCCCEEEEEEE
Q psy12061 5 GGNVTIFCNPEAAPKP-KFVWKKDGN----IIG---S----------GGRRKIFE----NGNLLISPVSRDDSGIYSCTA 62 (626)
Q Consensus 5 G~~~~l~C~~~g~p~p-~i~W~~~~~----~i~---~----------~~~~~~~~----~g~L~i~~v~~~d~G~Y~C~a 62 (626)
|++|+|.|........ .|.|+|... .|. . .+|..+.. +.+|.|.+|+.+|+|.|.|..
T Consensus 1 G~~vtL~C~~~~~~~~~~v~W~k~~~~~~~~i~~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~nv~~~D~G~Y~C~~ 80 (97)
T cd05846 1 GGNVTLSCNLTLPEEVLQVTWQKIQGSSPENIATYSEKYGVKIQPSYFRRRSITSLGLNSTSITIWNVTLEDEGCYKCIF 80 (97)
T ss_pred CCcEEEEEEeCCCCeeEEEEEEEcCCCCceEEEEEcccCCcccCCCccCeEEEcCCCCCccEEEEeCCceeeeEEEEEEE
Confidence 8999999997655333 799998421 110 0 13433322 236999999999999999998
Q ss_pred Ec-CCCCceeeEEEEE
Q psy12061 63 TN-VHGMDESKGRLIV 77 (626)
Q Consensus 63 ~n-~~g~~~~~~~l~v 77 (626)
.. ..|.....+.|.|
T Consensus 81 ~~~p~g~~~~~~~L~v 96 (97)
T cd05846 81 NTFPDGSKSGTMCLTV 96 (97)
T ss_pred EeCCCCCeeeEEEEEE
Confidence 74 5566777778876
No 262
>cd05881 Ig1_Necl-2 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Ig1_Necl-2: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-2, Necl-2 (also known as cell adhesion molecule 1 (CADM1), SynCAM1, IGSF4A, Tslc1, sgIGSF, and RA175). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-2 is expressed in a wide variety of tissues, and is a
Probab=98.47 E-value=1.9e-06 Score=63.74 Aligned_cols=74 Identities=14% Similarity=0.271 Sum_probs=51.0
Q ss_pred CCceEEecCCcEEEEEEecccCCcceeEEEeeCCEEeccc-cCCccCCCeeEe-----cCCeEEEeecCCCCCEeEEEEE
Q psy12061 88 PPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNM-DLNELETPNINI-----DGGLLEITNASFADAGEYECVV 161 (626)
Q Consensus 88 ~~~~~v~~g~~~~l~C~~~~~p~p~~~i~W~~~~~~~~~~-~~~~~~~~~~~~-----~~~~l~i~~~~~~d~g~Y~C~a 161 (626)
.+++++.+|++++|.|.+.+.... .+.|++-+..+-.. ........|+.. ..-.|+|.+++.+|+|.|+|.+
T Consensus 4 ~~nvtv~~G~ta~L~C~v~~~~~~--~v~w~~~~~~~i~~~~~~~~~d~Rf~~~~~~~~~~tL~I~~vq~~D~G~Y~Cqv 81 (95)
T cd05881 4 TEDVTVVEGEVAIISCRVKNNDDS--VIQLLNPNRQTIYFRDVRPLKDSRFQLVNFSSNELRVSLSNVSLSDEGRYFCQL 81 (95)
T ss_pred cCceEEcCCCcEEEEEEEccCCcc--EEEEEecCCcEEEecCccccCCcCEEEEeCCCCEEEEEECcCCcccCEEEEEEE
Confidence 467899999999999999998654 35788766443210 000112234442 1226999999999999999998
Q ss_pred Ee
Q psy12061 162 KS 163 (626)
Q Consensus 162 ~n 163 (626)
..
T Consensus 82 ~t 83 (95)
T cd05881 82 YT 83 (95)
T ss_pred Ec
Confidence 64
No 263
>cd05751 Ig1_LILRB1_like First immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1) and similar proteins. Ig1_LILRB1_like: domain similar to the first immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1). This group includes, LILRA5 (LIR9), an activating natural cytotoxicity receptor NKp46, and the immune-type receptor glycoprotein VI (GPVI). LILRs are a family of immunoreceptors expressed on expressed on T and B cells, on monocytes, dendritic cells, and subgroups of natural killer (NK) cells. The human LILR family contains nine proteins (LILRA1-3,and 5, and LILRB1-5). From functional assays, and as the cytoplasmic domains of various LILRs, for example LILRB1 (LIR-1), LILRB2 (LIR-2), and LILRB3 (LIR-3) contain immunoreceptor tyrosine-based inhibitory motifs (ITIMs) it is thought that LIR proteins are inhibitory receptors. Of the eight LIR family proteins, only LIR-1(LILRB1), and LIR-2 (LILRB2),
Probab=98.45 E-value=6.1e-07 Score=66.84 Aligned_cols=66 Identities=20% Similarity=0.315 Sum_probs=48.8
Q ss_pred ceEEecCCcEEEEEEecccCCcceeEEEeeCCEEeccccCCccCCCeeEecCCeEEEeecCCCCCEeEEEEEEeC
Q psy12061 90 KITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEITNASFADAGEYECVVKST 164 (626)
Q Consensus 90 ~~~v~~g~~~~l~C~~~~~p~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~a~n~ 164 (626)
...|..|++++|.|..... ...+.|+|+|....... .........|.|.+++.+|+|.|+|.+.+.
T Consensus 10 ~~vV~~G~~VtL~C~~~~~---~~~f~l~k~g~~~~~~~------~~~~~~~~~f~i~~v~~~~~G~Y~C~~~~~ 75 (91)
T cd05751 10 SSVVPLGKPVTLRCQGPYG---AVEYRLYREGSTFAVKK------PPEPQNKAKFFIPSMKREHAGRYRCYYRSG 75 (91)
T ss_pred CCccCCCCcEEEEEecCCC---CCEEEEEECCCCccccc------cCCCceeEEEEccCCChhHCEEEEEEEECC
Confidence 4578899999999987532 34678999987644211 111124567999999999999999999875
No 264
>cd05886 Ig1_Nectin-1_like First immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111) and similar proteins. Ig1_Nectin-1_like: domain similar to the first immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111). Nectin-1 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. In addition nectins heterophilically trans-interact with other CAMs such as nectin-like molecules (Necls), nectin-1 for example, has been shown to trans-interact with Necl-1. Nectins also interact with various other proteins, including the actin filament (F-actin)-binding protein, afadin. Mutation in the human nectin-1 gene is
Probab=98.45 E-value=1.9e-06 Score=64.55 Aligned_cols=72 Identities=25% Similarity=0.457 Sum_probs=51.8
Q ss_pred ceEEEEeeeCCC-CCC---eeEEEeC--CE--Ec--cC-----------CCcEEEcc----CCcEEEccCCCCCCEEEEE
Q psy12061 6 GNVTIFCNPEAA-PKP---KFVWKKD--GN--II--GS-----------GGRRKIFE----NGNLLISPVSRDDSGIYSC 60 (626)
Q Consensus 6 ~~~~l~C~~~g~-p~p---~i~W~~~--~~--~i--~~-----------~~~~~~~~----~g~L~i~~v~~~d~G~Y~C 60 (626)
.+|+|.|..... |.. .|.|.|. +. .+ -. .+|..... +.+|.|.+++.+|+|.|+|
T Consensus 1 ~~v~L~C~f~~~~~~~~~~~V~W~k~~~~~~~~va~y~~~~g~~~~~~f~~Rv~f~~~~~~daSi~i~nl~~~D~G~Y~C 80 (99)
T cd05886 1 TDVVLHCSFINPLPPVKITQVTWQKLTNGSKQNVAIYNPSMGVSVLPPYRERVTFKNPSFEDGTISLSRLELEDEGVYIC 80 (99)
T ss_pred CcEEEEeEeecCCCCCCeEEEEEEECCCCCceEEEEECCcCCcccCccccCcEEEcCCCCCcceEEEcCCccccCEEEEE
Confidence 378999999743 222 6999983 11 11 01 14555442 3689999999999999999
Q ss_pred EEEc-CCCCceeeEEEEE
Q psy12061 61 TATN-VHGMDESKGRLIV 77 (626)
Q Consensus 61 ~a~n-~~g~~~~~~~l~v 77 (626)
.+.+ ..|...+.+.|.|
T Consensus 81 ~v~t~P~g~~~~~~~L~V 98 (99)
T cd05886 81 EFATFPTGNRESQLNLTV 98 (99)
T ss_pred EEEeCCCCCeEEEEEEEE
Confidence 9999 6777777788877
No 265
>cd00063 FN3 Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all animal proteins contain the FN3 repeat; including extracellular and intracellular proteins, membrane spanning cytokine receptors, growth hormone receptors, tyrosine phosphatase receptors, and adhesion molecules. FN3-like domains are also found in bacterial glycosyl hydrolases.
Probab=98.44 E-value=2.7e-06 Score=64.17 Aligned_cols=88 Identities=26% Similarity=0.437 Sum_probs=63.3
Q ss_pred CCCceEEEeeecceEEEEeeeccccccccceeeEEEEEEEEecCCCccceEEEEecCccceEEEeCCccCceEEEEEEEe
Q psy12061 393 APQGVFSRGFNSTAINVTWNPIELIRENIRGRLIGHRIKYWKEDNPEETAVYYLSRTTRNWALIVGLQPDTKYYVKVMAY 472 (626)
Q Consensus 393 ~p~~~~~~~~~~~si~l~W~~~~~~~~~~~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~v~V~a~ 472 (626)
+|.++.+......++.|+|+++.... +.+.+|.|.++........... ........+.+.+|.|++.|.|+|+|.
T Consensus 3 ~p~~~~~~~~~~~~~~v~W~~~~~~~----~~~~~y~v~~~~~~~~~~~~~~-~~~~~~~~~~i~~l~p~~~Y~~~v~a~ 77 (93)
T cd00063 3 PPTNLRVTDVTSTSVTLSWTPPEDDG----GPITGYVVEYREKGSGDWKEVE-VTPGSETSYTLTGLKPGTEYEFRVRAV 77 (93)
T ss_pred CCCCcEEEEecCCEEEEEECCCCCCC----CcceeEEEEEeeCCCCCCEEee-ccCCcccEEEEccccCCCEEEEEEEEE
Confidence 56678887777899999999876432 3477899998776522222111 111355668999999999999999999
Q ss_pred eCCCCCCCCccEE
Q psy12061 473 NNAGEGPESERYL 485 (626)
Q Consensus 473 ~~~g~s~~s~~~~ 485 (626)
+..|.|.++....
T Consensus 78 ~~~~~~~~s~~~~ 90 (93)
T cd00063 78 NGGGESPPSESVT 90 (93)
T ss_pred CCCccCCCccccc
Confidence 9888887765333
No 266
>cd05887 Ig1_Nectin-3_like First immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3) and similar proteins. Ig1_Nectin-3_like: domain similar to the first immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3). Nectin-3 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example, during spermatid development, the nectin-3,-2 trans-interaction is required for the formation of Sertoli cell-spermatid junctions in testis, and during morphogenesis of the ciliary body, the nectin-3,-1 trans-interaction is important for apex-apex adhesion between the pigment and non-pigment layers of the ciliary epithelia. Nectins also
Probab=98.43 E-value=2.4e-06 Score=63.31 Aligned_cols=72 Identities=24% Similarity=0.366 Sum_probs=52.2
Q ss_pred ceEEEEeeeCCCC-CCeeEEEeCC----EEcc-------------CCCcEEEc----cCCcEEEccCCCCCCEEEEEEEE
Q psy12061 6 GNVTIFCNPEAAP-KPKFVWKKDG----NIIG-------------SGGRRKIF----ENGNLLISPVSRDDSGIYSCTAT 63 (626)
Q Consensus 6 ~~~~l~C~~~g~p-~p~i~W~~~~----~~i~-------------~~~~~~~~----~~g~L~i~~v~~~d~G~Y~C~a~ 63 (626)
++|+|.|.....+ ...|+|.|-. ..|. -.+|..+. .+.+|.|.+|+.+|+|.|+|.+.
T Consensus 1 ~~vtL~C~~~~~~~~~qV~W~k~~~~~~~~ia~y~~~~g~~~~~~y~~Rv~~~~~~~~d~sl~i~nv~~~D~G~Y~C~v~ 80 (96)
T cd05887 1 KNVTLKCRIQVNETITQSSWEKIHGKGSVTLAVHHPMYGISIQPDYQGRVSFKNYSLLDATIMLENVGFSDIGVYICKAV 80 (96)
T ss_pred CCEEEEEEecCCCcEEEEEEEEcCCCCcEEEEEEcccCCcccChhhCCcEEEcCCCCCccEEEEeCCCccccEEEEEEEE
Confidence 4799999997543 3499999832 2221 01455552 35589999999999999999975
Q ss_pred -cCCCCceeeEEEEE
Q psy12061 64 -NVHGMDESKGRLIV 77 (626)
Q Consensus 64 -n~~g~~~~~~~l~v 77 (626)
...|...++..|.|
T Consensus 81 tfP~G~~~~~~~l~~ 95 (96)
T cd05887 81 TFPLGNTQSSTTVTV 95 (96)
T ss_pred eCCCCCeeEEEEEEE
Confidence 56688888888877
No 267
>cd04982 IgV_TCR_gamma Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) gamma chain. IgV_TCR_gamma: immunoglobulin (Ig) variable (V) domain of the gamma chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is
Probab=98.43 E-value=5.9e-07 Score=70.93 Aligned_cols=64 Identities=20% Similarity=0.375 Sum_probs=48.3
Q ss_pred CCCCceEEEEeeeCC--CCCCeeEEEeC--CEEc------c-----------CCCcEEEccCC-----cEEEccCCCCCC
Q psy12061 2 AGEGGNVTIFCNPEA--APKPKFVWKKD--GNII------G-----------SGGRRKIFENG-----NLLISPVSRDDS 55 (626)
Q Consensus 2 ~~~G~~~~l~C~~~g--~p~p~i~W~~~--~~~i------~-----------~~~~~~~~~~g-----~L~i~~v~~~d~ 55 (626)
+.+|++|+|.|.+.+ .+.+.+.|+|. |... . ..+|+.+..++ +|.|.+++.+|+
T Consensus 10 ~~~G~~v~l~C~~~~~~~~~~~v~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~~~~~Ds 89 (116)
T cd04982 10 REESKSVTISCKVSGIDFSTTYIHWYRQKPGQALERLLYVSSTSTQRKLSGGTKNKFEARKDVGKSTSTLTIQNLEKEDS 89 (116)
T ss_pred eCCCCCEEEEEEEeCCCccccEEEEEEECCCCCCEEEEEEecCCCcEEeCcccCCCEEEEEECCCCEEEEEEEECCHHHC
Confidence 578999999999987 67789999993 2211 0 13566554332 599999999999
Q ss_pred EEEEEEEEcC
Q psy12061 56 GIYSCTATNV 65 (626)
Q Consensus 56 G~Y~C~a~n~ 65 (626)
|.|.|.+...
T Consensus 90 g~Y~C~~~~~ 99 (116)
T cd04982 90 ATYYCAYWES 99 (116)
T ss_pred EEEEEEEecC
Confidence 9999999743
No 268
>cd00098 IgC Immunoglobulin Constant domain. IgC: Immunoglobulin constant domain (IgC). Members of the IgC family are components of immunoglobulin, T-cell receptors, CD1 cell surface glycoproteins, secretory glycoproteins A/C, and Major Histocompatibility Complex (MHC) class I/II molecules. In immunoglobulins, each chain is composed of one variable domain (IgV) and one or more IgC domains. These names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. The IgV domain is responsible for antigen binding, and the IgC domain is involved in oligomerization and molecular interactions.
Probab=98.41 E-value=6.5e-07 Score=67.87 Aligned_cols=64 Identities=28% Similarity=0.491 Sum_probs=48.9
Q ss_pred CCceEEEEeeeCCC-CC-CeeEEEeCCEEccCCCc---EEEccCC------cEEEccCCCCCCEEEEEEEEcCCC
Q psy12061 4 EGGNVTIFCNPEAA-PK-PKFVWKKDGNIIGSGGR---RKIFENG------NLLISPVSRDDSGIYSCTATNVHG 67 (626)
Q Consensus 4 ~G~~~~l~C~~~g~-p~-p~i~W~~~~~~i~~~~~---~~~~~~g------~L~i~~v~~~d~G~Y~C~a~n~~g 67 (626)
.|+.++|.|.+.|. |. ++|+|+|||..+..... .....+| .|.|.....+|.|.|+|.|.+...
T Consensus 12 ~~~~~~L~C~a~g~~P~~~~i~W~~~g~~~~~~~~~~~~~~~~~gt~~~~s~l~v~~~~~~~~~~y~C~v~h~~~ 86 (95)
T cd00098 12 LGGSVTLTCLATGFYPPDITVTWLKNGKELTSGVTTTPPVPNSDGTYSVSSQLTVSPSDWNSGDTYTCVVTHESL 86 (95)
T ss_pred cCCCeEEEEEEeeEECCCcEEEEEECCEECCCceeccccccCCCCCEEEEEEEEECHHHhCCCCCEEEEEEeCCC
Confidence 58999999999998 64 59999999999975542 2222334 366666666799999999998754
No 269
>cd05888 Ig1_Nectin-4_like Frst immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor) and similar proteins. Ig1_Nectin-4_like: domain similar to the first immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor). Nectin-4 belongs to the nectin family, which is comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example nectin-4 trans-interacts with nectin-1. Nectin-4 has also been shown to interact with the actin filament-binding protein, afadin. Unlike the other nectins, which are widely expressed in adult tissues, nectin-4 is mainly expressed during embryogenesis, and is not detected in normal adult
Probab=98.39 E-value=1.6e-06 Score=65.80 Aligned_cols=72 Identities=24% Similarity=0.458 Sum_probs=50.7
Q ss_pred ceEEEEeeeCCCC---CCeeEEEeC--C-E--Ecc-----------C--CCcEEEcc-----CCcEEEccCCCCCCEEEE
Q psy12061 6 GNVTIFCNPEAAP---KPKFVWKKD--G-N--IIG-----------S--GGRRKIFE-----NGNLLISPVSRDDSGIYS 59 (626)
Q Consensus 6 ~~~~l~C~~~g~p---~p~i~W~~~--~-~--~i~-----------~--~~~~~~~~-----~g~L~i~~v~~~d~G~Y~ 59 (626)
.+|+|.|.....+ ...|.|+|. + . .+. . .+|..+.. +.+|.|.+|+.+|+|.|.
T Consensus 1 ~~v~L~C~~~~~~~~~~~~v~W~k~~~~~~~~~i~~~~~~~~~~~~~~~~~Rv~f~~~~~~~~~sL~I~nv~~sD~GtY~ 80 (100)
T cd05888 1 GDTRLPCRYNVSDGETVVQVLWIRENAGGVEEEIALLHFKYGQTEFHAYEGRVRFETPNPIADGALILRNAVQADEGKYK 80 (100)
T ss_pred CCEEEEeEEecCCCCcEEEEEEEEccCCCCcEEEEEEeccCCcccCCCccCcEEEeCCCCCCceEEEEecCccccceEEE
Confidence 3799999996544 338999992 2 1 110 0 14555542 347999999999999999
Q ss_pred EEEEc-CCCCceeeEEEEE
Q psy12061 60 CTATN-VHGMDESKGRLIV 77 (626)
Q Consensus 60 C~a~n-~~g~~~~~~~l~v 77 (626)
|.+.+ ..|...+.+.|.|
T Consensus 81 C~v~~~p~g~~~~~~~L~V 99 (100)
T cd05888 81 CRVITFPAGNFEAELVLTV 99 (100)
T ss_pred EEEEeCCCCCeeeEEEEEe
Confidence 99997 5666666677766
No 270
>cd05713 Ig_MOG_like Immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG). Ig_MOG_like: immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG). MOG, a minor component of the myelin sheath, is an important CNS-specific autoantigen, linked to the pathogenesis of multiple sclerosis (MS) and experimental autoimmune encephalomyelitis (EAE). It is a transmembrane protein having an extracellular Ig domain. MOG is expressed in the CNS on the outermost lamellae of the myelin sheath, and on the surface of oligodendrocytes, and may participate in the completion, compaction, and/or maintenance of myelin. This group also includes butyrophilin (BTN). BTN is the most abundant protein in bovine milk-fat globule membrane (MFGM).
Probab=98.39 E-value=4.1e-06 Score=64.02 Aligned_cols=81 Identities=15% Similarity=0.150 Sum_probs=52.8
Q ss_pred CCcEEEEEEecccCC-cceeEEEeeCCE--Eecc--cc--C----CccCCCeeEe-------cCCeEEEeecCCCCCEeE
Q psy12061 96 HRNLQLRCSAHTEEL-LDVAYIWTHNGV--RIGN--MD--L----NELETPNINI-------DGGLLEITNASFADAGEY 157 (626)
Q Consensus 96 g~~~~l~C~~~~~p~-p~~~i~W~~~~~--~~~~--~~--~----~~~~~~~~~~-------~~~~l~i~~~~~~d~g~Y 157 (626)
|++++|.|....... ....+.|+|... .+.. .. . ...-..|+.. ...+|+|.+++.+|+|.|
T Consensus 1 G~~v~L~C~~~~~~~~~~~~v~W~k~~~~~~v~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y 80 (100)
T cd05713 1 GEDAELPCHLSPKMSAEHMEVRWFRSQFSPAVHLYRDGQDQYGEQMPEYRGRTELLKDAIAEGSVALRIHNVRASDEGLY 80 (100)
T ss_pred CCcEEEEeEEcCCCCCCeeEEEEEECCCceeEEEEcCCcccccccCccccceEEeecccccCCcEEEEEEcCChhhCEEE
Confidence 789999999864322 224678987541 1110 00 0 0001134433 235799999999999999
Q ss_pred EEEEEeCCCceEEEEEEEE
Q psy12061 158 ECVVKSTVGKISTKTTVIV 176 (626)
Q Consensus 158 ~C~a~n~~g~~~~~~~l~v 176 (626)
+|.+.|..+..+..+.|.|
T Consensus 81 ~C~v~~~~~~~~~~i~l~v 99 (100)
T cd05713 81 TCFFQSDGFYEEATVELKV 99 (100)
T ss_pred EEEEecCCcEEEEEEEEEE
Confidence 9999998887777777765
No 271
>cd05880 Ig_EVA1 Immunoglobulin (Ig)-like domain of epithelial V-like antigen 1 (EVA). Ig_EVA: immunoglobulin (Ig) domain of epithelial V-like antigen 1 (EVA). EVA is also known as myelin protein zero-like 2. EVA is an adhesion molecule, which may play a role in structural organization of the thymus and early lymphocyte development.
Probab=98.38 E-value=1.3e-06 Score=68.32 Aligned_cols=67 Identities=22% Similarity=0.421 Sum_probs=45.9
Q ss_pred CCCCceEEEEeeeCCCC----CCeeEEEe----CCEE--c---c------CC----CcEEEcc-----CCcEEEccCCCC
Q psy12061 2 AGEGGNVTIFCNPEAAP----KPKFVWKK----DGNI--I---G------SG----GRRKIFE-----NGNLLISPVSRD 53 (626)
Q Consensus 2 ~~~G~~~~l~C~~~g~p----~p~i~W~~----~~~~--i---~------~~----~~~~~~~-----~g~L~i~~v~~~ 53 (626)
|.+|++++|.|.....+ ...|.|++ ++.+ + . .. +|..+.. +.+|.|.+++.+
T Consensus 10 ~~~G~~v~L~C~~s~~~~~~~~~~i~W~~~~~~~~~~~~v~~~~~~~~~~~~~~f~~R~~~~~~~~~~~~sL~I~~v~~~ 89 (115)
T cd05880 10 AVNGTDVRLKCTFSSSAPIGDTLVITWNFRPLDGGREESVFYYHKRPYPPPDGRFKGRVVWDGNIMRRDASILIWQLQPT 89 (115)
T ss_pred EEcCCCEEEEEEEEeCCCCCCcEEEEEEEECCCCCceeEEEEECCCccccCcccccCeEEEecCCcCCceEEEEeeCChh
Confidence 57899999999986543 23699985 1221 1 0 11 2333221 236999999999
Q ss_pred CCEEEEEEEEcCCCC
Q psy12061 54 DSGIYSCTATNVHGM 68 (626)
Q Consensus 54 d~G~Y~C~a~n~~g~ 68 (626)
|+|.|.|.+.|..+.
T Consensus 90 D~G~Y~C~v~~~~~~ 104 (115)
T cd05880 90 DNGTYTCQVKNPPDV 104 (115)
T ss_pred hCEEEEEEEEeCCCC
Confidence 999999999987664
No 272
>cd05878 Ig_Aggrecan_like Immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG). Ig_Aggrecan_like: immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG)s. Included in this group are the Ig domains of other CSPGs: versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substi
Probab=98.38 E-value=4.3e-06 Score=64.67 Aligned_cols=84 Identities=18% Similarity=0.273 Sum_probs=57.8
Q ss_pred cCCcEEEEEEecccCCc--------ceeEEEeeC--CEEec----ccc---CCccCCCeeEe-------cCCeEEEeecC
Q psy12061 95 AHRNLQLRCSAHTEELL--------DVAYIWTHN--GVRIG----NMD---LNELETPNINI-------DGGLLEITNAS 150 (626)
Q Consensus 95 ~g~~~~l~C~~~~~p~p--------~~~i~W~~~--~~~~~----~~~---~~~~~~~~~~~-------~~~~l~i~~~~ 150 (626)
.|++++|.|.....+.+ ...|.|+|. +.... ... +...-.+|+.. +...|+|.+++
T Consensus 1 ~G~~V~LpC~~~~~~~~~~~~~~~~~~~i~W~k~~~~~~~~v~~~~~~~~~~~~~f~gR~~~~~~~~~~~~asL~I~~l~ 80 (110)
T cd05878 1 LSSSVLLPCYFTLPPALPPPSNAPESPRIKWTKLSGQKEVTVLVAQDGVVKVGQEYQGRVSLPNYPENRGDASLEISRLR 80 (110)
T ss_pred CCCCEEEeeEeeCCccccccccCCCCCEEEEEEecCCCcEEEEEEECCEEEecccccCeEEeccCCCCCCcEEEEECCCC
Confidence 38999999999876532 357899984 22211 000 00111234443 34579999999
Q ss_pred CCCCEeEEEEEEeCCCceEEEEEEEEeC
Q psy12061 151 FADAGEYECVVKSTVGKISTKTTVIVEG 178 (626)
Q Consensus 151 ~~d~g~Y~C~a~n~~g~~~~~~~l~v~~ 178 (626)
.+|+|.|.|.+.......+..+.|.|.+
T Consensus 81 ~sD~G~Y~C~v~~~~~~~~~~v~l~V~g 108 (110)
T cd05878 81 SSDSGVYRCEVMHGIEDEQDTVPLEVTG 108 (110)
T ss_pred hhhCEEEEEEEEeCCCcceEEEEEEEEE
Confidence 9999999999998777788888888764
No 273
>cd05902 Ig_Neurocan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan. Ig_Neurocan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Unlike aggrecan which is widely distributed in connective tissue and extracellular matrices, neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many differen
Probab=98.36 E-value=2.7e-06 Score=65.09 Aligned_cols=74 Identities=24% Similarity=0.361 Sum_probs=52.7
Q ss_pred CceEEEEeeeCCCC-------CCeeEEEeC-----CEEc----cC----------CCcEEEcc------CCcEEEccCCC
Q psy12061 5 GGNVTIFCNPEAAP-------KPKFVWKKD-----GNII----GS----------GGRRKIFE------NGNLLISPVSR 52 (626)
Q Consensus 5 G~~~~l~C~~~g~p-------~p~i~W~~~-----~~~i----~~----------~~~~~~~~------~g~L~i~~v~~ 52 (626)
|++|+|.|...-.| .+.|.|.|- ...+ .. .+|..+.. +-+|.|.+|+.
T Consensus 2 ~~~v~LpC~~~~~p~~~~~~~~~~I~W~k~~~~~~~~~~~v~v~~~~~~~~~~~y~gRvsl~~~~~~~~~asL~i~nv~~ 81 (110)
T cd05902 2 SSSVLLPCVFTLPPSASSPPEGPRIKWTKLRPASGQKQRPVLVARDNVVRVAKAFQGRVSLPGYPKNRYNASLVLSRLRY 81 (110)
T ss_pred CCcEEEeeEEEcCccccCCCCCCEEEEEEeCCCCCceEEEEEECCCCcEEEchhcccEEEeecCCCCCceEEEEECCCCH
Confidence 88999999965322 369999984 1111 01 24655543 22699999999
Q ss_pred CCCEEEEEEEEcCCCCceeeEEEEEE
Q psy12061 53 DDSGIYSCTATNVHGMDESKGRLIVL 78 (626)
Q Consensus 53 ~d~G~Y~C~a~n~~g~~~~~~~l~v~ 78 (626)
+|+|.|+|.+............|.|.
T Consensus 82 ~D~G~Y~C~v~~g~~~~~~~v~L~V~ 107 (110)
T cd05902 82 SDSGTYRCEVVLGINDEQDTVPLEVT 107 (110)
T ss_pred HHCEEEEEEEEECCcccEEEEEEEEE
Confidence 99999999999876556666777764
No 274
>cd05759 Ig2_KIRREL3-like Second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). Ig2_KIRREL3-like: domain similar to the second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.
Probab=98.36 E-value=2.3e-06 Score=62.53 Aligned_cols=69 Identities=14% Similarity=0.264 Sum_probs=45.6
Q ss_pred cEEEEEEecc-cCCcceeEEEeeCCEEeccccCCcc--CCCeeEecCCeEEEeecCCCCCEeEEEEEEeCCCce
Q psy12061 98 NLQLRCSAHT-EELLDVAYIWTHNGVRIGNMDLNEL--ETPNINIDGGLLEITNASFADAGEYECVVKSTVGKI 168 (626)
Q Consensus 98 ~~~l~C~~~~-~p~p~~~i~W~~~~~~~~~~~~~~~--~~~~~~~~~~~l~i~~~~~~d~g~Y~C~a~n~~g~~ 168 (626)
.++|.|.+.+ .|.+ .++|+|+|..+........ ..+......+.|.|......|.|.|+|.|.|.....
T Consensus 1 ~~~L~C~v~g~~P~~--~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~~~~~y~C~a~n~~l~~ 72 (82)
T cd05759 1 PYNLTCRARGAKPAA--EIIWFRDGEVLDGATYSKELLKDGKRETTVSTLPITPSDHDTGRTFTCRARNEALPT 72 (82)
T ss_pred CEEEEEEEeCccCCC--EEEEEECCEEccCceeeeeEecCCCeEEEEEEEEEeCceecCCCEEEEEEcCccCCC
Confidence 3689999988 4654 6799999998864321000 011111123467788877788999999999876543
No 275
>PF13927 Ig_3: Immunoglobulin domain; PDB: 2D3V_A 1G0X_A 1VDG_A 1P7Q_D 3D2U_H 1UFU_A 1UGN_A 3VH8_H 3OQ3_B 4DKD_C ....
Probab=98.36 E-value=6.8e-07 Score=64.33 Aligned_cols=68 Identities=21% Similarity=0.432 Sum_probs=45.4
Q ss_pred CCceEEecCCcEEEEEEecccCCcceeEEEeeCCEEeccccCCccCCCeeEecCCeEEEeecCCCCCEeEEEEEEe
Q psy12061 88 PPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEITNASFADAGEYECVVKS 163 (626)
Q Consensus 88 ~~~~~v~~g~~~~l~C~~~~~p~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~a~n 163 (626)
+.......+. ++|.|.+.+.+. ...+.|+......... ........+.|.|.++..+|.|.|+|.|.|
T Consensus 8 ~~~~~~~~~~-~~l~C~~~~~~~-~~~~~W~~~~~~~~~~------~~~~~~~~~~L~i~~v~~~~~g~y~C~a~N 75 (75)
T PF13927_consen 8 PPPVVTSGGS-VTLTCSAEGGPP-PPSISWYDSNPSFNSN------SRGSSSSNSTLTISNVTRSDNGTYTCIASN 75 (75)
T ss_dssp STSEEETTEE-EEEEEEESSEES-SEEEEEETEEEEEEEE------EEEEEEEEEEEEESSCCGGGTEEEEEEEEE
T ss_pred CCCcEeecee-EEEEEEEccccC-CeEEEEEecCCceeee------eeeccceeeEEEEccCCHHhCcEEEEEEEC
Confidence 3333333344 999999999884 4578999111111110 122333667899999999999999999987
No 276
>cd05901 Ig_Versican Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican. Ig_Versican: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Like aggrecan, versican has a wide distribution in connective tissue and extracellular matrices. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA
Probab=98.35 E-value=6.2e-06 Score=63.07 Aligned_cols=74 Identities=23% Similarity=0.398 Sum_probs=53.9
Q ss_pred CceEEEEeeeCCCC-----------CCeeEEEeC-----CE-----Ec--cC----------CCcEEEcc------CCcE
Q psy12061 5 GGNVTIFCNPEAAP-----------KPKFVWKKD-----GN-----II--GS----------GGRRKIFE------NGNL 45 (626)
Q Consensus 5 G~~~~l~C~~~g~p-----------~p~i~W~~~-----~~-----~i--~~----------~~~~~~~~------~g~L 45 (626)
|++++|.|...-.| ...|.|.|- |. .+ .. .+|..+.. +-+|
T Consensus 2 ~g~v~LPC~f~~~p~~p~~~~~~~~~~rIkW~~~~~~~~g~~~~e~~Vlv~~~g~~~~~~~y~gRv~l~~~~~~~g~asL 81 (117)
T cd05901 2 SGSVVLPCRFSTLPTLPPSVITTSEFLRIKWTKIEVDKNGKDHKETTVLVAQNGIIKIGQEYMGRVSVPSHPEDQGDASL 81 (117)
T ss_pred CCCEEEeeEEEecCCCCCcccCCCCCcEEEEEEecccccccCCCccEEEEEECCEEEECCcccCcEEeeccCCcCCceEE
Confidence 78999999997443 238999983 11 11 01 24555542 2379
Q ss_pred EEccCCCCCCEEEEEEEEcCCCCceeeEEEEEE
Q psy12061 46 LISPVSRDDSGIYSCTATNVHGMDESKGRLIVL 78 (626)
Q Consensus 46 ~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~v~ 78 (626)
.|.+++.+|+|.|+|.+.+..........|.|.
T Consensus 82 ~i~~v~~sD~G~Y~C~V~~g~~~~~~~v~L~V~ 114 (117)
T cd05901 82 TIVKLRASDAGVYRCEVMHGIEDTQDTVSLDVS 114 (117)
T ss_pred EEcccccccCEEEEEEEEECCcccEEEEEEEEE
Confidence 999999999999999999887777777787774
No 277
>cd07705 Ig2_Necl-1 Second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). Ig2_Necl-1: second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue and is important to the formation of synapses, axon bundles, and myel
Probab=98.35 E-value=4.3e-06 Score=60.71 Aligned_cols=62 Identities=13% Similarity=0.247 Sum_probs=44.0
Q ss_pred eEEEEeeeCCC-CCCeeEEEeCCEEccCCCc-EEEccC-C------cEEEccCCCCCCEEEEEEEEcCCCC
Q psy12061 7 NVTIFCNPEAA-PKPKFVWKKDGNIIGSGGR-RKIFEN-G------NLLISPVSRDDSGIYSCTATNVHGM 68 (626)
Q Consensus 7 ~~~l~C~~~g~-p~p~i~W~~~~~~i~~~~~-~~~~~~-g------~L~i~~v~~~d~G~Y~C~a~n~~g~ 68 (626)
.+.|.|.+.|. |.++|+|+|||.+|..... .....+ + .|.|.....+|...|+|.|.+....
T Consensus 1 ~~~LtC~a~g~~P~~~ItW~k~g~~l~~~~~~~~~~~~~~t~~~~s~l~~~~~~~d~g~~~tC~v~h~~l~ 71 (83)
T cd07705 1 KAKLRCTSSGSKPAANIKWRKGDQELEGAPTSVLEDGNGKTFTVSSSVEFQVTREDDGAEITCSVGHESLH 71 (83)
T ss_pred CEEEEEEecCccCCCEeEEEECCEECCCcceeEEECCCCCEEEEEEEEEEEecchhCCCEEEEEEECcccC
Confidence 37899999886 9999999999999865322 111222 2 2555555566778999999987543
No 278
>smart00060 FN3 Fibronectin type 3 domain. One of three types of internal repeat within the plasma protein, fibronectin. The tenth fibronectin type III repeat contains a RGD cell recognition sequence in a flexible loop between 2 strands. Type III modules are present in both extracellular and intracellular proteins.
Probab=98.33 E-value=8.4e-06 Score=59.71 Aligned_cols=80 Identities=23% Similarity=0.434 Sum_probs=52.8
Q ss_pred CCceEEEeeeCCCEEEEEEeecCCCCCCCceeeEEEEEEEeccCCccccceeeecCccceEEecCCCCCceEEEEEEEEe
Q psy12061 496 PPSAVHIKGINPTTVHVTWRYVSPSFEEEPIIGYKVRVWEVDQDMSRANDTIIPVGNTLDADIVDLSPGKRYHMRVLAFS 575 (626)
Q Consensus 496 ~p~~l~~~~~~~~~~~l~W~~~~~~~~~~~i~~Y~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~p~~~Y~~~V~a~~ 575 (626)
+|.++.+.....+++.|+|++ +...+. .+|.+.|......................+.+.+|.|++.|.|+|+|.+
T Consensus 3 ~p~~~~~~~~~~~~~~v~W~~--~~~~~~--~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~~~~~Y~v~v~a~~ 78 (83)
T smart00060 3 PPSNLRVTDVTSTSVTLSWEP--PPDDGI--TGYIVGYRVEYREEGSSWKEVNVTPSSTSYTLTGLKPGTEYEFRVRAVN 78 (83)
T ss_pred CCCcEEEEEEeCCEEEEEECC--CCCCCC--CccEEEEEEEEecCCCccEEEEecCCccEEEEeCcCCCCEEEEEEEEEc
Confidence 344577777777799999994 332222 5787776654432211122222223357899999999999999999999
Q ss_pred cCCC
Q psy12061 576 NGGD 579 (626)
Q Consensus 576 ~~G~ 579 (626)
..|.
T Consensus 79 ~~g~ 82 (83)
T smart00060 79 GAGE 82 (83)
T ss_pred ccCC
Confidence 8664
No 279
>cd05900 Ig_Aggrecan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan. Ig_Aggrecan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan. These aggregates contribute to the tissue's load bearing properties. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Aggrecan has a wide distribution in connective tissue and extracellular matrices. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes.
Probab=98.33 E-value=8e-06 Score=62.80 Aligned_cols=84 Identities=19% Similarity=0.264 Sum_probs=57.1
Q ss_pred cCCcEEEEEEecccCCc----------ceeEEEeeC--CEE---eccc-c-C--CccCCCeeEe-------cCCeEEEee
Q psy12061 95 AHRNLQLRCSAHTEELL----------DVAYIWTHN--GVR---IGNM-D-L--NELETPNINI-------DGGLLEITN 148 (626)
Q Consensus 95 ~g~~~~l~C~~~~~p~p----------~~~i~W~~~--~~~---~~~~-~-~--~~~~~~~~~~-------~~~~l~i~~ 148 (626)
.|++++|.|.......+ ...|.|+|- |.. +... . . ...-..|+.+ .+..|.|.+
T Consensus 1 ~G~~VtLpC~~~~~~~~~~~~~~~~~~~~~I~W~k~~~g~~~~ii~~~~~~~~~~~~f~~R~sl~~~~~~~~~asL~I~n 80 (112)
T cd05900 1 LGSSLLIPCYFQDPIAKDPGAPTVAPLSPRIKWSFISKEKESVLLVATEGKVRVNTEYLDRVSLPNYPAIPSDATLEITE 80 (112)
T ss_pred CCCcEEEeeEEeCCcCccccccccCCCCCEEEEEEecCCCccEEEEEECCeEEECccccCeEEecccCCCCCCcEEEEee
Confidence 48999999999865321 357899984 211 1100 0 0 0011125544 467999999
Q ss_pred cCCCCCEeEEEEEEeCCCceEEEEEEEEeC
Q psy12061 149 ASFADAGEYECVVKSTVGKISTKTTVIVEG 178 (626)
Q Consensus 149 ~~~~d~g~Y~C~a~n~~g~~~~~~~l~v~~ 178 (626)
++.+|+|.|+|.+.+.....+..+.|.|.+
T Consensus 81 l~~sDsG~Y~C~V~~g~~~~~~~v~l~v~g 110 (112)
T cd05900 81 LRSNDSGTYRCEVMHGIEDNYDTVEVQVKG 110 (112)
T ss_pred cccccCEEEEEEEecCCCCceeEEEEEEEe
Confidence 999999999999998877888888888764
No 280
>cd05755 Ig2_ICAM-1_like Second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins. Ig2_ ICAM-1_like: domain similar to the second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54). During the inflammation process, these molecules recruit leukocytes onto the vascular endothelium before extravasation to the injured tissues. ICAM-1 may be involved in organ targeted tumor metastasis. The interaction of ICAM-1 with leukocyte function-associated antigen-1 (LFA-1) plays a part in leukocyte-endothelial cell recognition. This group also contains ICAM-2, which also interacts with LFA-1. Transmigration of immature dendritic cells across resting endothelium is dependent on the interaction of ICAM-2 with, yet unidentified, ligand(s) on the dendritic cells. ICAM-1 has five Ig-like domains and ICAM-2 has two. ICAM-1 may also act as host receptor for viruses and parasites.
Probab=98.33 E-value=3.8e-06 Score=62.42 Aligned_cols=80 Identities=10% Similarity=0.132 Sum_probs=53.0
Q ss_pred CCCceEEecCCcEEEEEEecc-cCCcceeEEEeeCCEEeccccCCccCCCeeEecCCeEEEeecCCCCCEeEEEEEEeCC
Q psy12061 87 LPPKITIAAHRNLQLRCSAHT-EELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEITNASFADAGEYECVVKSTV 165 (626)
Q Consensus 87 ~~~~~~v~~g~~~~l~C~~~~-~p~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~a~n~~ 165 (626)
.+....+.+|+.++|.|.+.+ .|.+.++|.|+|++..+........ ..........|.+..-...|.-.|+|.|.+..
T Consensus 7 ~~~p~~~~eG~~~tL~C~v~g~~P~a~L~i~W~rG~~~l~~~~~~~~-~~~~~~~~stlt~~~~r~D~g~~~sC~A~l~l 85 (100)
T cd05755 7 SPLPSWQPVGKNYTLQCDVPGVAPRQNLTVVLLRGNETLSRQPFGDN-TKSPVNAPATITITVDREDHGANFSCETELDL 85 (100)
T ss_pred ecCCCcccCCCcEEEEEEEcCcCCCCcEEEEEeeCCEEcccceeccc-cCCCceeEEEEEEecchhhCCcEEEEEEEecc
Confidence 344556789999999999998 5666667899999999976432111 01111123456666444444449999999876
Q ss_pred Cc
Q psy12061 166 GK 167 (626)
Q Consensus 166 g~ 167 (626)
+.
T Consensus 86 ~~ 87 (100)
T cd05755 86 RP 87 (100)
T ss_pred Cc
Confidence 54
No 281
>cd04983 IgV_TCR_alpha_like Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) alpha chain and similar proteins. IgV_TCR_alpha: immunoglobulin (Ig) variable domain of the alpha chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group represents the variable domain of the alpha chain of TCRs and also includes the variable domain of delta chains of TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide.
Probab=98.33 E-value=2.8e-06 Score=66.30 Aligned_cols=78 Identities=19% Similarity=0.305 Sum_probs=53.4
Q ss_pred eCCCceEEecCCcEEEEEEecccCCcceeEEEeeCCE---Ee---cccc-CCccCCCeeEe------cCCeEEEeecCCC
Q psy12061 86 QLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGV---RI---GNMD-LNELETPNINI------DGGLLEITNASFA 152 (626)
Q Consensus 86 ~~~~~~~v~~g~~~~l~C~~~~~p~p~~~i~W~~~~~---~~---~~~~-~~~~~~~~~~~------~~~~l~i~~~~~~ 152 (626)
++|..+.+.+|++++|.|.+.+.+.+ .+.|++... +. .... .......|+.+ ....|+|.+++.+
T Consensus 3 q~~~~v~~~~G~~v~L~C~~~~~~~~--~v~W~k~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~~~~~ 80 (109)
T cd04983 3 QSPQSLSVQEGENVTLNCNYSTSTFY--YLFWYRQYPGQGPQFLIYISSNGEEKEKGRFSATLDKSRKSSSLHISAAQLS 80 (109)
T ss_pred ecCCceEEcCCCCEEEEEEECCCCcc--EEEEEEECCCCCeEEEEEEecCCCcccCCcEEEEEcccCCEEEEEECCCCHH
Confidence 46778899999999999999987443 568987431 11 0000 00012244433 2358999999999
Q ss_pred CCEeEEEEEEeCC
Q psy12061 153 DAGEYECVVKSTV 165 (626)
Q Consensus 153 d~g~Y~C~a~n~~ 165 (626)
|+|.|.|.+.+..
T Consensus 81 DsG~Y~C~~~~~~ 93 (109)
T cd04983 81 DSAVYFCALSESG 93 (109)
T ss_pred HCEEEEEEEecCC
Confidence 9999999998754
No 282
>cd05884 Ig2_Necl-3 Second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Ig2_Necl-3: second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-3 has been shown to accumulate in tissues of the central and peripheral nervous system, where it is expressed in ependymal cells and myelinated axons. It is observed at the interface between the axon shaft and the myelin sheath. Ig domains are likely to participate in ligand binding and recognition.
Probab=98.30 E-value=3.7e-06 Score=60.86 Aligned_cols=61 Identities=16% Similarity=0.182 Sum_probs=44.0
Q ss_pred EEEEeeeCCC-CCCeeEEEeCCEEccCCCcEEEc--cCC------cEEEccCCCCCCEEEEEEEEcCCCC
Q psy12061 8 VTIFCNPEAA-PKPKFVWKKDGNIIGSGGRRKIF--ENG------NLLISPVSRDDSGIYSCTATNVHGM 68 (626)
Q Consensus 8 ~~l~C~~~g~-p~p~i~W~~~~~~i~~~~~~~~~--~~g------~L~i~~v~~~d~G~Y~C~a~n~~g~ 68 (626)
++|.|.+.|. |.++|+|+|||.++......... .+| .|.|..-..+|...|+|.|.+....
T Consensus 2 ~~LtC~a~gf~P~~~itW~kng~~l~~~~~~~~~~~~~~t~~~~s~L~~~~~~~d~g~~ytC~v~h~~l~ 71 (83)
T cd05884 2 MQLTCKTSGSKPAADIRWFKNDKEIKDVKYLKEEDANRKTFTVSSTLDFRVDRSDDGVAIICRVDHESLN 71 (83)
T ss_pred EEEEEEeCCccCCCEEEEEECCEECcCceeeEeeCCCCCEEEEEEEEEEEcccccCCCEEEEEEechhcC
Confidence 6899999884 77899999999998643322222 122 4777655567778999999987544
No 283
>cd05715 Ig_P0-like Immunoglobulin (Ig)-like domain of Protein zero (P0) and similar proteins. Ig_P0ex-like: domain similar to the immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an extracellular Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin. This group also contains the Ig domain of Sodium channel subunit beta-2
Probab=98.30 E-value=3.3e-06 Score=66.39 Aligned_cols=67 Identities=21% Similarity=0.405 Sum_probs=46.1
Q ss_pred CCCCceEEEEeeeCCCC----CCeeEEEeCCE------Ec---------c-CC----CcEEEccC-----CcEEEccCCC
Q psy12061 2 AGEGGNVTIFCNPEAAP----KPKFVWKKDGN------II---------G-SG----GRRKIFEN-----GNLLISPVSR 52 (626)
Q Consensus 2 ~~~G~~~~l~C~~~g~p----~p~i~W~~~~~------~i---------~-~~----~~~~~~~~-----g~L~i~~v~~ 52 (626)
|.+|++|+|.|...... ...|.|++... .+ . .. +|..+..+ .+|.|.+++.
T Consensus 10 v~~G~~vtL~C~~s~~~~~~~~~~v~W~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~~ 89 (116)
T cd05715 10 AVNGSDVRLKCTFSSSEPISDDISVTWSFQPEGSGDTESIFHYHKGPYYPLKDGRFKDRVEWVGNPSRKDASIVIHNLQF 89 (116)
T ss_pred EEcCCCeEEEeEEeCCCCcCCceEEEEEEecCCCCCcEEEEEEcCCccccccCccccCcEEEecCCcCCeeEEEEeeCCc
Confidence 57899999999986542 24699986211 11 0 11 33333322 3699999999
Q ss_pred CCCEEEEEEEEcCCCC
Q psy12061 53 DDSGIYSCTATNVHGM 68 (626)
Q Consensus 53 ~d~G~Y~C~a~n~~g~ 68 (626)
+|+|.|.|.+.|....
T Consensus 90 ~D~G~Y~C~v~~~~~~ 105 (116)
T cd05715 90 TDNGTYTCDVKNPPDI 105 (116)
T ss_pred ccCEEEEEEEEeCCCC
Confidence 9999999999987554
No 284
>PHA02987 Ig domain OX-2-like protein; Provisional
Probab=98.30 E-value=4.5e-06 Score=68.14 Aligned_cols=78 Identities=26% Similarity=0.396 Sum_probs=57.2
Q ss_pred CCCCceEEEEeeeC-CCCCCeeEEEeCCEEcc----------C--CCcEEEc----cCCcEEEccCCCCCCEEEEEEEEc
Q psy12061 2 AGEGGNVTIFCNPE-AAPKPKFVWKKDGNIIG----------S--GGRRKIF----ENGNLLISPVSRDDSGIYSCTATN 64 (626)
Q Consensus 2 ~~~G~~~~l~C~~~-g~p~p~i~W~~~~~~i~----------~--~~~~~~~----~~g~L~i~~v~~~d~G~Y~C~a~n 64 (626)
|.+|++|+|.|... +...+.|.|+|....+. . .+|..++ .+.+|.|.+|+.+|+|.|.|...-
T Consensus 27 V~ege~VtLsCs~t~s~~~~qVtWkK~~~~IatY~~~g~~i~~~Fk~Rve~mS~s~~~StItIknVt~sDeGcY~C~F~t 106 (189)
T PHA02987 27 VSEHVNVKISCNKTSSFNSILITWKKNNKTIAGYGPCGPVIVDKFKNKIEYLSKSFNESTILIKNVSLKDNGCYTCIFNT 106 (189)
T ss_pred EcCCCCEEEEEecCCCCccceEEEEEcCCCEEEEecCCcEEChhhcCeEEEeccCCCcceEEEEeCChhhCeEEEEEEEe
Confidence 68999999999984 65677999999644321 1 1455542 234699999999999999998863
Q ss_pred -CCC-CceeeEEEEEEe
Q psy12061 65 -VHG-MDESKGRLIVLH 79 (626)
Q Consensus 65 -~~g-~~~~~~~l~v~~ 79 (626)
..| .....+.|.|..
T Consensus 107 fp~G~~~~gt~CLtVt~ 123 (189)
T PHA02987 107 LLSKNNEKGVVCLNVTT 123 (189)
T ss_pred cCCCCCceeEEEEEEEc
Confidence 345 566677888854
No 285
>COG3401 Fibronectin type 3 domain-containing protein [General function prediction only]
Probab=98.25 E-value=0.00017 Score=64.68 Aligned_cols=250 Identities=16% Similarity=0.055 Sum_probs=136.4
Q ss_pred CcCeEEEEEeeCCCCCcccCcceEEEEEEecCCCcceeeeeeeecceeeEEEEeCCCcceeEEEEEEEEecCCCCCCCCc
Q psy12061 300 KIGDLSISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETLKEYGNVGIAVVRIPSEFYYTEYEVKVQAINDVGPGPESE 379 (626)
Q Consensus 300 ~~~~v~l~W~~~~~~~~~~~~~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~p~~~Y~~~v~a~n~~g~~~~s~ 379 (626)
.+..+.+.|.+. ..-+...|.|+....+.. +...... .+.-...+.-.+|.++..|.++|.+.+..+.-..+.
T Consensus 82 ~~~~~~~~w~~~----~d~~~~~Y~i~~~~gD~~-f~r~~~~--~n~l~~~~i~s~~~~~~~~~~~Iia~~f~~~~sfsf 154 (343)
T COG3401 82 RPKSVKVFWSPH----PDVSVGKYIIQRQNGDGK-FLRTGLV--KNRLFVEFIDSDLGHNEKYMELIIAADFQMGKSFSF 154 (343)
T ss_pred Ccceeeeccccc----CCCCCCeEEEEEecCchh-hhhhhHH--HhccchhheecccccccceeeeEEeecccccceeee
Confidence 356799999983 234567799988765533 4322211 121222333457889999999999998776433332
Q ss_pred cEEEEccCCCCCCCCCceEEEeeecceEEEEeeeccccccccceeeEEEEEEEEecCCCccceEEEEecCccceEEEeCC
Q psy12061 380 VVTIFSAEDMPQVAPQGVFSRGFNSTAINVTWNPIELIRENIRGRLIGHRIKYWKEDNPEETAVYYLSRTTRNWALIVGL 459 (626)
Q Consensus 380 ~~~~~t~~~~p~~~p~~~~~~~~~~~si~l~W~~~~~~~~~~~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~L 459 (626)
...--+....|. .-.++++.....+.+.|+|..+.. ...|+|+-.. ...+..........+.......+|
T Consensus 155 ~gVE~~~~~~P~-ei~~~~~~~d~~~~i~ls~dg~~~--------~~yy~IY~~~-~g~e~~~~ia~t~~n~y~d~~egl 224 (343)
T COG3401 155 TGVEATPKAEPK-EITNVRVSFDLGNNIELSEDGSEA--------EDYYRIYASD-SGNEEYGFIAQTTENSYYDVKEGL 224 (343)
T ss_pred eeeecccccCCc-eeeeeeeecCCCCcceeeccCccc--------cceEEEeccC-Cccccccceeeccccchhhhhhcc
Confidence 222222233333 333455566677889999987653 2267876432 222222222222222222223343
Q ss_pred ccCceEEEEEEEeeCCC-CCCCCccEEE-eecCCCCCCCCceEEEeeeCCCEEEEEEeecCCCCCCCceeeEEEEEEEec
Q psy12061 460 QPDTKYYVKVMAYNNAG-EGPESERYLE-RTYRKAPQKPPSAVHIKGINPTTVHVTWRYVSPSFEEEPIIGYKVRVWEVD 537 (626)
Q Consensus 460 ~p~t~Y~v~V~a~~~~g-~s~~s~~~~~-~t~~~~p~~~p~~l~~~~~~~~~~~l~W~~~~~~~~~~~i~~Y~i~~~~~~ 537 (626)
|..|...|.+.+..| ++..+..... .|... +. .|... -.....+.+.|.|++.+ . -....|.++ +-.+
T Consensus 225 --ga~~~y~VTtVd~~~~es~lp~~~t~~~~~g~-~e-~pt~~-g~t~~~s~i~V~~E~~~---~-~~av~ytvy-r~~~ 294 (343)
T COG3401 225 --GAVEYYKVTTVDNTGFESDLPNEPTVGETGGR-YE-VPTIP-GETTEASFIGVAAEQNQ---L-RQAVTYTVY-RVED 294 (343)
T ss_pred --CceeEEEEEEEcCCcceeccCCccccccccCC-cc-cccCC-CceeeeeeeeEEecccc---c-ceeeEEeee-eccC
Confidence 678888888887544 5666654433 33332 22 11111 11123345668887311 1 233456663 2222
Q ss_pred cCCccccceeeecCccceEEecCCCCCceEEEEEEEEecCCCCC
Q psy12061 538 QDMSRANDTIIPVGNTLDADIVDLSPGKRYHMRVLAFSNGGDGR 581 (626)
Q Consensus 538 ~~~~~~~~~~~~~~~~~~~~l~~L~p~~~Y~~~V~a~~~~G~g~ 581 (626)
+. ......-..+...+..+.++..|.+.|.+.+.+|.+.
T Consensus 295 g~-----~~~~f~it~~d~~d~~~ltg~~~~y~v~~v~~~gls~ 333 (343)
T COG3401 295 GT-----PTKFFTITETDGQDNDMLTGVEYRYEVVAVDKAGLSS 333 (343)
T ss_pred CC-----cceeeeeeeccccchhhccccceeEEEEEeccccccc
Confidence 21 1112222445677888999999999999999998654
No 286
>cd05711 Ig_FcalphaRI Immunoglobulin (IG)-like domain of of FcalphaRI. IG_FcalphaRI : immunoglobulin (IG)-like domain of of FcalphaRI. FcalphaRI (CD89) is an IgA-specific receptor that is expressed on monocytes, eosinophils, neutrophils and macrophages. FcalphaRI mediates IgA-induced immune effector responses such as phagocytosis, antibody-dependent cell-mediated cytotoxicity and respiratory burst. Both monomeric and dimeric IgA can bind to FcalphaRI, and monomeric or dimeric IgA immune complexes can activate phagocytosis and other immune responses through the clustering of FcalphaRI. The Fc RI ectodomain is comprised of two Ig-like domains oriented at about 90 degree to each another.
Probab=98.25 E-value=3.6e-06 Score=62.97 Aligned_cols=62 Identities=21% Similarity=0.388 Sum_probs=44.0
Q ss_pred CCCCceEEEEeeeCCCCCCeeEEEeCCEEccCCCcEEEcc---CCcEEEccCCCCCCEEEEEEEEc
Q psy12061 2 AGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFE---NGNLLISPVSRDDSGIYSCTATN 64 (626)
Q Consensus 2 ~~~G~~~~l~C~~~g~p~p~i~W~~~~~~i~~~~~~~~~~---~g~L~i~~v~~~d~G~Y~C~a~n 64 (626)
|.+|++|+|.|.... +.-.+.|+|+|............. ...+.|.+++.+|+|.|+|....
T Consensus 12 V~~G~~VTL~C~~~~-~~~~f~l~k~g~~~~~~~~~~~~~~~~~a~f~I~~~~~~~~G~Y~C~~~~ 76 (94)
T cd05711 12 VPSGENVTLQCHSDI-RFDRFILYKEGRSKPVLHLYEKHHGGFQASFPLGPVTPAHAGTYRCYGSY 76 (94)
T ss_pred cCCCCeEEEEEecCC-CCCEEEEEECCCCCCceecccccCCeEEEEEEecCCCcccCEEEEEEEEC
Confidence 568999999998865 455899999887532110000000 11589999999999999999853
No 287
>cd05899 IgV_TCR_beta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) bet a chain. IgV_TCR_beta: immunoglobulin (Ig) variable domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the alpha chain of alpha/beta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide.
Probab=98.23 E-value=4.1e-06 Score=65.28 Aligned_cols=77 Identities=19% Similarity=0.228 Sum_probs=51.9
Q ss_pred eCCCceEEecCCcEEEEEEecccCCcceeEEEeeCC--EEecc------ccCC---ccCCCeeEe-----cCCeEEEeec
Q psy12061 86 QLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNG--VRIGN------MDLN---ELETPNINI-----DGGLLEITNA 149 (626)
Q Consensus 86 ~~~~~~~v~~g~~~~l~C~~~~~p~p~~~i~W~~~~--~~~~~------~~~~---~~~~~~~~~-----~~~~l~i~~~ 149 (626)
+.|..+.+.+|++++|.|.+.+ +.+ .+.|+|.. ..... .... .....++.. ....|.|.++
T Consensus 3 Q~p~~~~v~~G~~v~l~C~~~~-~~~--~v~Wykq~~g~~~~~l~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~~ 79 (110)
T cd05899 3 QSPRYLIKGRGQSVTLRCSQTS-GHD--NMYWYRQDPGKGLQLLFYSNGGSLNEEEGDPKDRFSASRPSLTRSSLTIKSA 79 (110)
T ss_pred ECCCceEEcCCCcEEEEEEECC-CCC--EEEEEEECCCCCcEEEEEEcCCCceEecCccCCceEEECcCCCccEEEECCC
Confidence 5678899999999999999988 443 56899843 21110 0000 011233332 2357999999
Q ss_pred CCCCCEeEEEEEEeCC
Q psy12061 150 SFADAGEYECVVKSTV 165 (626)
Q Consensus 150 ~~~d~g~Y~C~a~n~~ 165 (626)
+.+|+|.|.|.+.+..
T Consensus 80 ~~~Dsg~Y~Ca~~~~~ 95 (110)
T cd05899 80 EPEDSAVYLCASSLGG 95 (110)
T ss_pred ChhhCEEEEEEeeCCC
Confidence 9999999999998654
No 288
>cd05716 Ig_pIgR Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR). Ig_pIgR: Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR). pIgR delivers dimeric IgA and pentameric IgM to mucosal secretions. Polymeric immunoglobulin (pIgs) are the first defense against pathogens and toxins. IgA and IgM can form polymers via an 18-residue extension at their c-termini referred to as the tailpiece. pIgR transports pIgs across mucosal epithelia into mucosal secretions. Human pIgR is a glycosylated type I transmembrane protein, comprised of a 620 residue extracellular region, a 23 residue transmembrane region, and a 103 residue cytoplasmic tail. The extracellular region contains five domains that share sequence similarity with Ig variable (v) regions.
Probab=98.23 E-value=4.1e-06 Score=63.69 Aligned_cols=65 Identities=28% Similarity=0.481 Sum_probs=47.8
Q ss_pred CCCCceEEEEeeeCC-CCCCeeEEEeCCE-----Ec--------cCCCcEEEccC---C--cEEEccCCCCCCEEEEEEE
Q psy12061 2 AGEGGNVTIFCNPEA-APKPKFVWKKDGN-----II--------GSGGRRKIFEN---G--NLLISPVSRDDSGIYSCTA 62 (626)
Q Consensus 2 ~~~G~~~~l~C~~~g-~p~p~i~W~~~~~-----~i--------~~~~~~~~~~~---g--~L~i~~v~~~d~G~Y~C~a 62 (626)
|.+|++|+|.|.... .+...+.|+|... .| ...+|..+..+ + +|.|.+++.+|+|.|.|.+
T Consensus 4 ~~~G~~vtl~C~~~~~~~~~~~~W~r~~~~~~~~~l~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~ 83 (98)
T cd05716 4 GELGGSVTIPCPYPPKNRSYEKYWCKWGSAGCCLIIVSEGSVQSQYEGRVSLTDDPDNGVFTVTLNQLRKEDAGWYWCGV 83 (98)
T ss_pred EEeCCeEEEEeeCCCCCCCcEeEeECCCCCCCCeEEECCCccccccCCCEEEEecCCCCEEEEEEcCCCHHHCEEEEEEc
Confidence 578999999999875 3566899998432 11 12355655422 2 5999999999999999999
Q ss_pred EcCC
Q psy12061 63 TNVH 66 (626)
Q Consensus 63 ~n~~ 66 (626)
....
T Consensus 84 ~~~~ 87 (98)
T cd05716 84 GDDG 87 (98)
T ss_pred ccCC
Confidence 7653
No 289
>cd05741 Ig_CEACAM_D1_like First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) and similar proteins. Ig_CEACAM_D1_like : immunoglobulin (IG)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily-like. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surf
Probab=98.22 E-value=5.9e-06 Score=62.11 Aligned_cols=78 Identities=22% Similarity=0.228 Sum_probs=51.1
Q ss_pred CCcEEEEEEecccCCcceeEEEeeCCEEecccc-----------CCccCCCeeEe-cCCeEEEeecCCCCCEeEEEEEEe
Q psy12061 96 HRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMD-----------LNELETPNINI-DGGLLEITNASFADAGEYECVVKS 163 (626)
Q Consensus 96 g~~~~l~C~~~~~p~p~~~i~W~~~~~~~~~~~-----------~~~~~~~~~~~-~~~~l~i~~~~~~d~g~Y~C~a~n 163 (626)
|++|+|.|....... ..+.|+++........ ....-..|... .+++|.|.+++.+|+|.|+|.+..
T Consensus 1 G~~VtL~c~~~~~~~--~~i~W~~~~~~~~~~~i~~~~~~~~~~~~~~~~~R~~~~~~~sL~I~~l~~~DsG~Y~c~v~~ 78 (92)
T cd05741 1 GESVTLPVSNLPENL--QEITWYKGKDKSVEAEIASYIATNSTVFGPAYSGRETIYPNGSLLIQNLTKEDSGTYTLQIIS 78 (92)
T ss_pred CCcEEEEcccCCCCC--EEEEEECCCCCCcceEEEEEecCCceeECCCcCCeEEEcCCceEEEccCCchhcEEEEEEEEc
Confidence 789999998876443 4679998654322110 00011234443 558999999999999999999987
Q ss_pred CCCc-eEEEEEEE
Q psy12061 164 TVGK-ISTKTTVI 175 (626)
Q Consensus 164 ~~g~-~~~~~~l~ 175 (626)
..|. ......|.
T Consensus 79 ~~~~~~~~~~~l~ 91 (92)
T cd05741 79 TNGVTENAKFFLR 91 (92)
T ss_pred CCCcEEEEEEEEE
Confidence 7653 34444443
No 290
>PF07686 V-set: Immunoglobulin V-set domain; InterPro: IPR013106 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the V-set domains, which are Ig-like domains resembling the antibody variable domain. V-set domains are found in diverse protein families, including immunoglobulin light and heavy chains; in several T-cell receptors such as CD2 (Cluster of Differentiation 2), CD4, CD80, and CD86; in myelin membrane adhesion molecules; in junction adhesion molecules (JAM); in tyrosine-protein kinase receptors; and in the programmed cell death protein 1 (PD1).; PDB: 1PY9_A 2NXY_D 1U9K_B 3RNK_A 3BP6_A 3BIK_B 3SBW_A 1NPU_A 3BP5_A 3RNQ_A ....
Probab=98.21 E-value=2.3e-06 Score=67.65 Aligned_cols=64 Identities=28% Similarity=0.506 Sum_probs=48.1
Q ss_pred CCCCceEEEEeeeC-CCCCCeeEEEeCCE-----Ecc--------------CCCcEEEccCC-----cEEEccCCCCCCE
Q psy12061 2 AGEGGNVTIFCNPE-AAPKPKFVWKKDGN-----IIG--------------SGGRRKIFENG-----NLLISPVSRDDSG 56 (626)
Q Consensus 2 ~~~G~~~~l~C~~~-g~p~p~i~W~~~~~-----~i~--------------~~~~~~~~~~g-----~L~i~~v~~~d~G 56 (626)
+.+|++|+|.|... ......+.|++... .|. ..+|..+..++ +|.|.+++.+|+|
T Consensus 13 ~~~G~~v~L~C~~~~~~~~~~v~W~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~i~~l~~~DsG 92 (114)
T PF07686_consen 13 VQEGESVTLPCSYSSSSNQSSVYWYRQSPGQGPQLIIRYSLSSTNETPTPSYSGRFTFSGNGSQNNFSLTIKNLQPSDSG 92 (114)
T ss_dssp EETTSEEEEEEEEESSSSGSEEEEEEEETTSEEEEEEEEETTEEEEEEETTETTTEEEEEETTTTEEEEEESSESGGGEE
T ss_pred EecCCCEEEEEEEeCCCCcceEEEEEECccccceeeeeeccceeeeccccceeeeeeeeecccCCeEEEEECCCCcCcCE
Confidence 56899999999998 55666999998222 111 12455544443 4999999999999
Q ss_pred EEEEEEEcC
Q psy12061 57 IYSCTATNV 65 (626)
Q Consensus 57 ~Y~C~a~n~ 65 (626)
.|.|.+...
T Consensus 93 ~Y~C~v~~~ 101 (114)
T PF07686_consen 93 TYFCQVSTS 101 (114)
T ss_dssp EEEEEEEES
T ss_pred EEEEEEEEC
Confidence 999999876
No 291
>cd05880 Ig_EVA1 Immunoglobulin (Ig)-like domain of epithelial V-like antigen 1 (EVA). Ig_EVA: immunoglobulin (Ig) domain of epithelial V-like antigen 1 (EVA). EVA is also known as myelin protein zero-like 2. EVA is an adhesion molecule, which may play a role in structural organization of the thymus and early lymphocyte development.
Probab=98.21 E-value=1.8e-05 Score=61.86 Aligned_cols=81 Identities=14% Similarity=0.229 Sum_probs=52.1
Q ss_pred CCCceEEecCCcEEEEEEecccCC--cceeEEEee----CCEE--ec--cccCCccC----CCeeEe------cCCeEEE
Q psy12061 87 LPPKITIAAHRNLQLRCSAHTEEL--LDVAYIWTH----NGVR--IG--NMDLNELE----TPNINI------DGGLLEI 146 (626)
Q Consensus 87 ~~~~~~v~~g~~~~l~C~~~~~p~--p~~~i~W~~----~~~~--~~--~~~~~~~~----~~~~~~------~~~~l~i 146 (626)
.|..+.+.+|++++|.|.....+. ..+.|.|++ ++.+ +- ..+..... ..|... .+.+|+|
T Consensus 4 ~~~~v~~~~G~~v~L~C~~s~~~~~~~~~~i~W~~~~~~~~~~~~v~~~~~~~~~~~~~~f~~R~~~~~~~~~~~~sL~I 83 (115)
T cd05880 4 TSKEVEAVNGTDVRLKCTFSSSAPIGDTLVITWNFRPLDGGREESVFYYHKRPYPPPDGRFKGRVVWDGNIMRRDASILI 83 (115)
T ss_pred cCceEEEEcCCCEEEEEEEEeCCCCCCcEEEEEEEECCCCCceeEEEEECCCccccCcccccCeEEEecCCcCCceEEEE
Confidence 367788999999999999875432 134679974 1221 10 00000001 122221 3457999
Q ss_pred eecCCCCCEeEEEEEEeCCCc
Q psy12061 147 TNASFADAGEYECVVKSTVGK 167 (626)
Q Consensus 147 ~~~~~~d~g~Y~C~a~n~~g~ 167 (626)
.+++.+|+|.|+|.+.|..+.
T Consensus 84 ~~v~~~D~G~Y~C~v~~~~~~ 104 (115)
T cd05880 84 WQLQPTDNGTYTCQVKNPPDV 104 (115)
T ss_pred eeCChhhCEEEEEEEEeCCCC
Confidence 999999999999999987664
No 292
>cd05887 Ig1_Nectin-3_like First immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3) and similar proteins. Ig1_Nectin-3_like: domain similar to the first immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3). Nectin-3 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example, during spermatid development, the nectin-3,-2 trans-interaction is required for the formation of Sertoli cell-spermatid junctions in testis, and during morphogenesis of the ciliary body, the nectin-3,-1 trans-interaction is important for apex-apex adhesion between the pigment and non-pigment layers of the ciliary epithelia. Nectins also
Probab=98.17 E-value=1.8e-05 Score=58.65 Aligned_cols=79 Identities=22% Similarity=0.391 Sum_probs=53.5
Q ss_pred CcEEEEEEecccCCcceeEEEeeCC----EEecccc------CCccCCCeeEe-----cCCeEEEeecCCCCCEeEEEEE
Q psy12061 97 RNLQLRCSAHTEELLDVAYIWTHNG----VRIGNMD------LNELETPNINI-----DGGLLEITNASFADAGEYECVV 161 (626)
Q Consensus 97 ~~~~l~C~~~~~p~p~~~i~W~~~~----~~~~~~~------~~~~~~~~~~~-----~~~~l~i~~~~~~d~g~Y~C~a 161 (626)
++++|.|.....+ ....++|.|-. ..+.... +...-..|+.. .+.+|.|.+++.+|+|.|+|.+
T Consensus 1 ~~vtL~C~~~~~~-~~~qV~W~k~~~~~~~~ia~y~~~~g~~~~~~y~~Rv~~~~~~~~d~sl~i~nv~~~D~G~Y~C~v 79 (96)
T cd05887 1 KNVTLKCRIQVNE-TITQSSWEKIHGKGSVTLAVHHPMYGISIQPDYQGRVSFKNYSLLDATIMLENVGFSDIGVYICKA 79 (96)
T ss_pred CCEEEEEEecCCC-cEEEEEEEEcCCCCcEEEEEEcccCCcccChhhCCcEEEcCCCCCccEEEEeCCCccccEEEEEEE
Confidence 4789999988654 34578998742 1221000 00011134443 3679999999999999999998
Q ss_pred Ee-CCCceEEEEEEEE
Q psy12061 162 KS-TVGKISTKTTVIV 176 (626)
Q Consensus 162 ~n-~~g~~~~~~~l~v 176 (626)
.+ ..|..+++..|.|
T Consensus 80 ~tfP~G~~~~~~~l~~ 95 (96)
T cd05887 80 VTFPLGNTQSSTTVTV 95 (96)
T ss_pred EeCCCCCeeEEEEEEE
Confidence 65 7899898888876
No 293
>cd05718 Ig1_PVR_like First immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins. Ig1_PVR_like: domain similar to the first immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), that result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane, may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus "c
Probab=98.17 E-value=1.2e-05 Score=61.26 Aligned_cols=80 Identities=19% Similarity=0.297 Sum_probs=53.2
Q ss_pred CcEEEEEEecccCC-cceeEEEeeCCEE----ec---cc---cCCccCCCeeEe-----cCCeEEEeecCCCCCEeEEEE
Q psy12061 97 RNLQLRCSAHTEEL-LDVAYIWTHNGVR----IG---NM---DLNELETPNINI-----DGGLLEITNASFADAGEYECV 160 (626)
Q Consensus 97 ~~~~l~C~~~~~p~-p~~~i~W~~~~~~----~~---~~---~~~~~~~~~~~~-----~~~~l~i~~~~~~d~g~Y~C~ 160 (626)
++++|.|.....+. ....|.|+|.... +. .. .+......|... .+..|+|.+++.+|+|.|.|.
T Consensus 1 ~~v~L~C~~~~~~~~~~~~v~W~k~~~~~~~~i~~~~~~~~~~~~~~~~~R~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~ 80 (98)
T cd05718 1 ESVTLECSFPVPGPVQITQVTWMKITGGSKQNIAVFHPQYGISIPPSYEGRVSFLNSSLEDATISISNLRLEDEGNYICE 80 (98)
T ss_pred CCEEEEeEeeCCCCceEEEEEEeeECCCCCEEEEEEecCCCcccCcCcCceEEEeCCCCCceEEEEccCCcccCEEEEEE
Confidence 57999999887652 2346899985431 10 00 000111233332 356899999999999999999
Q ss_pred EEe-CCCceEEEEEEEE
Q psy12061 161 VKS-TVGKISTKTTVIV 176 (626)
Q Consensus 161 a~n-~~g~~~~~~~l~v 176 (626)
+.+ ..|.....+.|.|
T Consensus 81 v~~~~~g~~~~~~~l~V 97 (98)
T cd05718 81 FATFPQGNRQKVTTLTV 97 (98)
T ss_pred EEeCCCCcEEEEEEEEe
Confidence 875 6788888888776
No 294
>cd05775 Ig_SLAM-CD84_like_N N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like. Ig_SLAM-CD84_like_N: The N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like. The SLAM family is a group of immune-cell specific receptors that can regulate both adaptive and innate immune responses. Members of this group include proteins such as CD84, SLAM (CD150), Ly-9 (CD229), NTB-A (ly-108, SLAM6), 19A (CRACC), and SLAMF9. The genes coding for the SLAM family are nested on chromosome 1, in humans at 1q23, and in mice at 1H2. The SLAM family is a subset of the CD2 family, which also includes CD2 and CD58 located on chromosome 1 at 1p13 in humans. In mice, CD2 is located on chromosome 3, and there is no CD58 homolog. The SLAM family proteins are organized as an extracellular domain with either two or four Ig-like domains, a single transmembrane segment, and a cytoplasmic region
Probab=98.16 E-value=9e-06 Score=61.32 Aligned_cols=82 Identities=17% Similarity=0.168 Sum_probs=53.8
Q ss_pred ecCCcEEEEEEecccCCcceeEEEeeCCEEeccccC----Cc------cCCCeeEe--cCCeEEEeecCCCCCEeEEEEE
Q psy12061 94 AAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDL----NE------LETPNINI--DGGLLEITNASFADAGEYECVV 161 (626)
Q Consensus 94 ~~g~~~~l~C~~~~~p~p~~~i~W~~~~~~~~~~~~----~~------~~~~~~~~--~~~~l~i~~~~~~d~g~Y~C~a 161 (626)
..|++|+|.|..... .....+.|++....+..... .. .-..|... .+.+|.|.+++.+|+|.|+|.+
T Consensus 2 ~~G~sVtL~c~~~~~-~~~~~v~W~~~~~~~i~~~~~~~~~~~~~~~~~f~~R~~~~~~~~sL~I~~~~~~DsG~Y~c~v 80 (97)
T cd05775 2 ILGGSVTLPLNIPDG-TEIESITWSFNTSLAIITPGEETAPEIIVTDPSYKERVNFSQNDYSLQISNLKMEDAGSYRAEI 80 (97)
T ss_pred ccCCeEEEeCCCCCC-cEEEEEEEecCCEeEEEecCCCCCCccEEeCCCceeeEEecCCceeEEECCCchHHCEEEEEEE
Confidence 469999999987651 22346799987543321110 00 00124443 3478999999999999999999
Q ss_pred EeCCCce-EEEEEEEE
Q psy12061 162 KSTVGKI-STKTTVIV 176 (626)
Q Consensus 162 ~n~~g~~-~~~~~l~v 176 (626)
.+..|.. .....|.|
T Consensus 81 ~~~~~~~~~~~f~L~v 96 (97)
T cd05775 81 NTKNGVTITKEFTLHI 96 (97)
T ss_pred EcCCCCeEEEEEEEEe
Confidence 9877654 55556655
No 295
>cd05720 Ig_CD8_alpha Immunoglobulin (Ig) like domain of CD8 alpha chain. Ig_CD8_alpha: immunoglobulin (Ig)-like domain in CD8 alpha. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alphaalpha or alphabeta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a v-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain. The Ig domain of CD8 alpha binds to antibodies.
Probab=98.16 E-value=7.4e-06 Score=62.73 Aligned_cols=63 Identities=17% Similarity=0.330 Sum_probs=44.4
Q ss_pred CCCCceEEEEeeeCCCCCCeeEEEeC--C--EE---c---cC------------CCcEEEccCC---cEEEccCCCCCCE
Q psy12061 2 AGEGGNVTIFCNPEAAPKPKFVWKKD--G--NI---I---GS------------GGRRKIFENG---NLLISPVSRDDSG 56 (626)
Q Consensus 2 ~~~G~~~~l~C~~~g~p~p~i~W~~~--~--~~---i---~~------------~~~~~~~~~g---~L~i~~v~~~d~G 56 (626)
|.+|++|+|.|.+.+.-...+.|+|. | .. | .. ..|+.+..++ +|.|.+++.+|+|
T Consensus 3 v~~G~~vtL~C~~~~~~~~~v~Wyrq~~g~~~~~~~l~~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~L~I~~~~~sDsg 82 (104)
T cd05720 3 AELGQKVELKCEVLNSSPTGCSWLFQPPGSAPQPTFLVYLSGSSKITWDEEELSSKRFSGSRSSNSFVLTLKNFQKENEG 82 (104)
T ss_pred ccCCCeEEEEEEecCCCCCcEEEEEeCCCCCCCCEEEEEEeCCCCeeeccccCCCceEEEEecCCEEEEEECCCCHHHCE
Confidence 67999999999986654567999982 2 11 1 11 1233332222 5999999999999
Q ss_pred EEEEEEEc
Q psy12061 57 IYSCTATN 64 (626)
Q Consensus 57 ~Y~C~a~n 64 (626)
.|.|.+.+
T Consensus 83 tY~Ca~~~ 90 (104)
T cd05720 83 YYFCSVAS 90 (104)
T ss_pred EEEEEEcc
Confidence 99999864
No 296
>cd07700 IgV_CD8_beta Immunoglobulin (Ig) like domain of CD8 beta chain. IgV_CD8_beta: immunoglobulin (Ig)-like domain in CD8 beta. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alpha/alpha or alpha/beta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a V-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain.
Probab=98.15 E-value=7.5e-06 Score=63.22 Aligned_cols=64 Identities=20% Similarity=0.395 Sum_probs=44.9
Q ss_pred CCCCceEEEEeeeCCCC-CCeeEEEeC--C---EEc------c-----------CCCcEEEc--cCC---cEEEccCCCC
Q psy12061 2 AGEGGNVTIFCNPEAAP-KPKFVWKKD--G---NII------G-----------SGGRRKIF--ENG---NLLISPVSRD 53 (626)
Q Consensus 2 ~~~G~~~~l~C~~~g~p-~p~i~W~~~--~---~~i------~-----------~~~~~~~~--~~g---~L~i~~v~~~ 53 (626)
|.+|++|+|.|.+.+.. ...+.|+|- | ..+ . ...|..+. .++ .|.|.+++.+
T Consensus 3 v~~G~~vtL~C~~~~~~~~~~~~Wyrq~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~I~~~~~~ 82 (107)
T cd07700 3 VQTNNTVKLSCEAKGISENTRIYWLRWRQAPKDSHFEFLALWSPLGGATYGEEVSQEKFSIRVTSDSSRYRLHINRVKPE 82 (107)
T ss_pred EcCCCCEEEEEEEecCCCCCeEEEEEECCCCCCCccEEEEEEcCCCCeEEccccccCcEEEEEECCCCEEEEEECCCCHH
Confidence 67999999999997643 458999982 2 110 0 02344432 222 4999999999
Q ss_pred CCEEEEEEEEcC
Q psy12061 54 DSGIYSCTATNV 65 (626)
Q Consensus 54 d~G~Y~C~a~n~ 65 (626)
|+|.|.|...+.
T Consensus 83 Dsg~YyCa~~~~ 94 (107)
T cd07700 83 DSGTYFCMTVGS 94 (107)
T ss_pred HCEEEEEeEcCC
Confidence 999999998643
No 297
>cd05715 Ig_P0-like Immunoglobulin (Ig)-like domain of Protein zero (P0) and similar proteins. Ig_P0ex-like: domain similar to the immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an extracellular Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin. This group also contains the Ig domain of Sodium channel subunit beta-2
Probab=98.15 E-value=2.1e-05 Score=61.84 Aligned_cols=80 Identities=20% Similarity=0.358 Sum_probs=50.8
Q ss_pred CCceEEecCCcEEEEEEecccCC--cceeEEEeeCCE------Eec-c-c-cC----CccCCCeeEe------cCCeEEE
Q psy12061 88 PPKITIAAHRNLQLRCSAHTEEL--LDVAYIWTHNGV------RIG-N-M-DL----NELETPNINI------DGGLLEI 146 (626)
Q Consensus 88 ~~~~~v~~g~~~~l~C~~~~~p~--p~~~i~W~~~~~------~~~-~-~-~~----~~~~~~~~~~------~~~~l~i 146 (626)
|..+.+.+|++++|.|....... ....+.|++... .+- . . .. ...-..|+.. .+.+|+|
T Consensus 5 p~~v~v~~G~~vtL~C~~s~~~~~~~~~~v~W~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I 84 (116)
T cd05715 5 PREVYAVNGSDVRLKCTFSSSEPISDDISVTWSFQPEGSGDTESIFHYHKGPYYPLKDGRFKDRVEWVGNPSRKDASIVI 84 (116)
T ss_pred CCeEEEEcCCCeEEEeEEeCCCCcCCceEEEEEEecCCCCCcEEEEEEcCCccccccCccccCcEEEecCCcCCeeEEEE
Confidence 67788999999999999875432 234679976211 110 0 0 00 0000122222 2357999
Q ss_pred eecCCCCCEeEEEEEEeCCCc
Q psy12061 147 TNASFADAGEYECVVKSTVGK 167 (626)
Q Consensus 147 ~~~~~~d~g~Y~C~a~n~~g~ 167 (626)
.+++.+|+|.|.|.+.|..+.
T Consensus 85 ~~v~~~D~G~Y~C~v~~~~~~ 105 (116)
T cd05715 85 HNLQFTDNGTYTCDVKNPPDI 105 (116)
T ss_pred eeCCcccCEEEEEEEEeCCCC
Confidence 999999999999999877553
No 298
>cd05846 Ig1_MRC-OX-2_like First immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200) and similar proteins. Ig1_ MRC-OX-2_like: domain similar to the first immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200). MRC OX-2 is a membrane glycoprotein expressed in a variety of lymphoid and non-lymphoid cells in rats. It has a similar broad distribution pattern in humans. MRC OX-2 may regulate myeloid cell activity. The protein has an extracellular portion containing two Ig-like domains, a transmembrane portion, and a cytoplasmic portion.
Probab=98.15 E-value=1.3e-05 Score=60.58 Aligned_cols=80 Identities=20% Similarity=0.335 Sum_probs=52.0
Q ss_pred CCcEEEEEEecccCCcceeEEEeeCCEE----ec---c-cc--CCccCCCeeEe-----cCCeEEEeecCCCCCEeEEEE
Q psy12061 96 HRNLQLRCSAHTEELLDVAYIWTHNGVR----IG---N-MD--LNELETPNINI-----DGGLLEITNASFADAGEYECV 160 (626)
Q Consensus 96 g~~~~l~C~~~~~p~p~~~i~W~~~~~~----~~---~-~~--~~~~~~~~~~~-----~~~~l~i~~~~~~d~g~Y~C~ 160 (626)
|++++|.|........ ..+.|+|.... +. . .. +...-..|... .+.+|+|.+++.+|+|.|+|.
T Consensus 1 G~~vtL~C~~~~~~~~-~~v~W~k~~~~~~~~i~~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~nv~~~D~G~Y~C~ 79 (97)
T cd05846 1 GGNVTLSCNLTLPEEV-LQVTWQKIQGSSPENIATYSEKYGVKIQPSYFRRRSITSLGLNSTSITIWNVTLEDEGCYKCI 79 (97)
T ss_pred CCcEEEEEEeCCCCee-EEEEEEEcCCCCceEEEEEcccCCcccCCCccCeEEEcCCCCCccEEEEeCCceeeeEEEEEE
Confidence 7899999997765432 36899984221 10 0 00 00001122222 456899999999999999999
Q ss_pred EEe-CCCceEEEEEEEE
Q psy12061 161 VKS-TVGKISTKTTVIV 176 (626)
Q Consensus 161 a~n-~~g~~~~~~~l~v 176 (626)
... ..|..+..+.|.|
T Consensus 80 ~~~~p~g~~~~~~~L~v 96 (97)
T cd05846 80 FNTFPDGSKSGTMCLTV 96 (97)
T ss_pred EEeCCCCCeeeEEEEEE
Confidence 864 6777777777776
No 299
>cd07694 Ig2_CD4 Second immunoglobulin (Ig) domain of CD4. Ig2_CD4; second immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy.
Probab=98.15 E-value=1.6e-05 Score=56.19 Aligned_cols=73 Identities=19% Similarity=0.234 Sum_probs=50.4
Q ss_pred CCCCceEEEEeeeCCCCC--CeeEEEeCCEEccCCCcEEEccCCcEEEccCCCCCCEEEEEEEEcCCCCceeeEEEEE
Q psy12061 2 AGEGGNVTIFCNPEAAPK--PKFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTATNVHGMDESKGRLIV 77 (626)
Q Consensus 2 ~~~G~~~~l~C~~~g~p~--p~i~W~~~~~~i~~~~~~~~~~~g~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~v 77 (626)
+.+|++++|+|.....+. +.|.|...+.... +.......+|.+.++...|+|..+|.+.-..-.....+.+.|
T Consensus 11 lL~G~sLtLtl~~~s~s~p~~~i~w~~P~n~~~---~~~~~~~ktL~~~qv~~qdSG~WtC~V~~~~k~~~~~~~V~V 85 (88)
T cd07694 11 VLSGTNLTLTLHGSSNSLPAFKVEWRGPGNKSK---QILNQDKKTLNLVQLGPNDSGTWDCIVSVNSSEKTLKLDIKV 85 (88)
T ss_pred eecCCcEEEEEecCCCCCCCccEEEeCCCCccc---eeccCCccEEEeceeCcccCCEEEEEEEECceEEEEEeeEEE
Confidence 568999999999966444 4999998554322 111123447999999999999999999744333334444444
No 300
>cd05886 Ig1_Nectin-1_like First immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111) and similar proteins. Ig1_Nectin-1_like: domain similar to the first immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111). Nectin-1 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. In addition nectins heterophilically trans-interact with other CAMs such as nectin-like molecules (Necls), nectin-1 for example, has been shown to trans-interact with Necl-1. Nectins also interact with various other proteins, including the actin filament (F-actin)-binding protein, afadin. Mutation in the human nectin-1 gene is
Probab=98.14 E-value=5.2e-05 Score=56.87 Aligned_cols=81 Identities=15% Similarity=0.310 Sum_probs=52.7
Q ss_pred CcEEEEEEecccCC--cceeEEEeeC--CEE--ecccc------CCccCCCeeEe-----cCCeEEEeecCCCCCEeEEE
Q psy12061 97 RNLQLRCSAHTEEL--LDVAYIWTHN--GVR--IGNMD------LNELETPNINI-----DGGLLEITNASFADAGEYEC 159 (626)
Q Consensus 97 ~~~~l~C~~~~~p~--p~~~i~W~~~--~~~--~~~~~------~~~~~~~~~~~-----~~~~l~i~~~~~~d~g~Y~C 159 (626)
.+++|.|.....++ ...+++|.+. +.. +.... +...-..|+.. .+.+|.|.+++.+|.|.|+|
T Consensus 1 ~~v~L~C~f~~~~~~~~~~~V~W~k~~~~~~~~va~y~~~~g~~~~~~f~~Rv~f~~~~~~daSi~i~nl~~~D~G~Y~C 80 (99)
T cd05886 1 TDVVLHCSFINPLPPVKITQVTWQKLTNGSKQNVAIYNPSMGVSVLPPYRERVTFKNPSFEDGTISLSRLELEDEGVYIC 80 (99)
T ss_pred CcEEEEeEeecCCCCCCeEEEEEEECCCCCceEEEEECCcCCcccCccccCcEEEcCCCCCcceEEEcCCccccCEEEEE
Confidence 36899999885322 1235789873 211 11000 00001133333 34799999999999999999
Q ss_pred EEEe-CCCceEEEEEEEEe
Q psy12061 160 VVKS-TVGKISTKTTVIVE 177 (626)
Q Consensus 160 ~a~n-~~g~~~~~~~l~v~ 177 (626)
.+.+ ..|..+..+.|.|.
T Consensus 81 ~v~t~P~g~~~~~~~L~V~ 99 (99)
T cd05886 81 EFATFPTGNRESQLNLTVY 99 (99)
T ss_pred EEEeCCCCCeEEEEEEEEC
Confidence 9999 78888888888873
No 301
>cd07694 Ig2_CD4 Second immunoglobulin (Ig) domain of CD4. Ig2_CD4; second immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy.
Probab=98.12 E-value=3e-05 Score=54.83 Aligned_cols=79 Identities=19% Similarity=0.295 Sum_probs=57.1
Q ss_pred ceEEecCCcEEEEEEecccCCcceeEEEeeCCEEeccccCCccCCCeeEecCCeEEEeecCCCCCEeEEEEEEeCCCceE
Q psy12061 90 KITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEITNASFADAGEYECVVKSTVGKIS 169 (626)
Q Consensus 90 ~~~v~~g~~~~l~C~~~~~p~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~a~n~~g~~~ 169 (626)
+..+..|++++|.|.....+.|..+|+|...+...-. ....+..+|.+..+...|+|..+|.+.-..-...
T Consensus 8 ~~~lL~G~sLtLtl~~~s~s~p~~~i~w~~P~n~~~~---------~~~~~~ktL~~~qv~~qdSG~WtC~V~~~~k~~~ 78 (88)
T cd07694 8 SDHVLSGTNLTLTLHGSSNSLPAFKVEWRGPGNKSKQ---------ILNQDKKTLNLVQLGPNDSGTWDCIVSVNSSEKT 78 (88)
T ss_pred CCeeecCCcEEEEEecCCCCCCCccEEEeCCCCccce---------eccCCccEEEeceeCcccCCEEEEEEEECceEEE
Confidence 4468899999999999776666567799975443221 1122667999999999999999999976544445
Q ss_pred EEEEEEEe
Q psy12061 170 TKTTVIVE 177 (626)
Q Consensus 170 ~~~~l~v~ 177 (626)
..+.+.|.
T Consensus 79 ~~~~V~Vl 86 (88)
T cd07694 79 LKLDIKVL 86 (88)
T ss_pred EEeeEEEE
Confidence 55555543
No 302
>cd04980 IgV_L_kappa Immunoglobulin (Ig) light chain, kappa type, variable (V) domain. IgV_L_kappa: Immunoglobulin (Ig) light chain, kappa type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.
Probab=98.12 E-value=1.7e-05 Score=61.22 Aligned_cols=79 Identities=16% Similarity=0.197 Sum_probs=50.8
Q ss_pred eeCCCceEEecCCcEEEEEEecccCCcceeEEEeeCC--EE---eccc-c-CCccCCCeeEe----cCCeEEEeecCCCC
Q psy12061 85 EQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNG--VR---IGNM-D-LNELETPNINI----DGGLLEITNASFAD 153 (626)
Q Consensus 85 ~~~~~~~~v~~g~~~~l~C~~~~~p~p~~~i~W~~~~--~~---~~~~-~-~~~~~~~~~~~----~~~~l~i~~~~~~d 153 (626)
.+.|..+.+.+|++++|.|.+.+... ...+.|+|.. .. +... . .......++.. ....|.|.+++.+|
T Consensus 4 ~Q~p~~~~v~~G~~v~L~C~~~~~~~-~~~~~Wyrq~~g~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~~~~~D 82 (106)
T cd04980 4 TQSPATLSVSPGESATISCKASQSVS-SNYLAWYQQKPGQAPKLLIYGASTLASGTPSRFSGSGSGTDFTLTISRVEPED 82 (106)
T ss_pred EECCCcEEECCCCCEEEEEEECCCCC-CCcEEEEEECCCCCcEEEEECccccCCCCCCCEEEeccCCEEEEEECCCChHH
Confidence 45677889999999999999876541 2356898742 21 1100 0 00001123333 22369999999999
Q ss_pred CEeEEEEEEeC
Q psy12061 154 AGEYECVVKST 164 (626)
Q Consensus 154 ~g~Y~C~a~n~ 164 (626)
+|.|.|.+.+.
T Consensus 83 sg~Y~Ca~~~~ 93 (106)
T cd04980 83 AAVYYCQQYGT 93 (106)
T ss_pred CEEEEEEEeCC
Confidence 99999998654
No 303
>cd07706 IgV_TCR_delta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) delta chain. IgV_TCR_delta: immunoglobulin (Ig) variable (V) domain of the delta chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is
Probab=98.11 E-value=1.2e-05 Score=63.38 Aligned_cols=64 Identities=25% Similarity=0.424 Sum_probs=47.0
Q ss_pred CCCCceEEEEeeeCCC-CCCeeEEEeC--CEE---c---------cCCCcEEEcc---CC--cEEEccCCCCCCEEEEEE
Q psy12061 2 AGEGGNVTIFCNPEAA-PKPKFVWKKD--GNI---I---------GSGGRRKIFE---NG--NLLISPVSRDDSGIYSCT 61 (626)
Q Consensus 2 ~~~G~~~~l~C~~~g~-p~p~i~W~~~--~~~---i---------~~~~~~~~~~---~g--~L~i~~v~~~d~G~Y~C~ 61 (626)
|.+|++|+|.|...+. ....+.|+|. +.. | ...+|+.+.. ++ +|.|.+++.+|+|.|.|.
T Consensus 11 ~~~G~~v~L~C~~~~~~~~~~v~Wyrq~~~~~~~~l~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~~~~~Dsg~Y~C~ 90 (116)
T cd07706 11 VQVGEEVTLNCRYETSWTNYYIFWYKQLPSGEMTFLIRQKSIYGNATKGRYSVNFQKAQKSISLTISALQLEDSAKYFCA 90 (116)
T ss_pred EcCCCCEEEEEEEeCCCCceEEEEEEECCCCceEEEEEecCccCCccCCeEEEEEeccCCEEEEEECCCCHHHCEEEEEE
Confidence 5789999999998764 4568999982 221 1 1135666542 12 599999999999999999
Q ss_pred EEcC
Q psy12061 62 ATNV 65 (626)
Q Consensus 62 a~n~ 65 (626)
+...
T Consensus 91 ~~~~ 94 (116)
T cd07706 91 LSTL 94 (116)
T ss_pred EECC
Confidence 9853
No 304
>cd05889 Ig1_DNAM-1_like First immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226) and similar proteins. Ig1_DNAM-1_like: domain similar to the first immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226). DNAM-1 is a transmembrane protein having two Ig-like domains. It is an adhesion molecule which plays a part in tumor-directed cytotoxicity and adhesion in natural killer (NK) cells and T lymphocytes. It has been shown to regulate the NK cell killing of several tumor types, including myeloma cells and ovarian carcinoma cells. DNAM-1 interacts specifically with poliovirus receptor (PVR; CD155) and nectin -2 (CD211), other members of the Ig superfamily. DNAM-1 is expressed in most peripheral T cells, NK cells, monocytes and a subset of B lymphocytes.
Probab=98.10 E-value=3.5e-05 Score=57.20 Aligned_cols=65 Identities=20% Similarity=0.383 Sum_probs=44.7
Q ss_pred ceEEEEeeeCCC-CCCeeEEEeCCE----Ec-----------cC--CCcEEEcc----CCcEEEccCCCCCCEEEEEEEE
Q psy12061 6 GNVTIFCNPEAA-PKPKFVWKKDGN----II-----------GS--GGRRKIFE----NGNLLISPVSRDDSGIYSCTAT 63 (626)
Q Consensus 6 ~~~~l~C~~~g~-p~p~i~W~~~~~----~i-----------~~--~~~~~~~~----~g~L~i~~v~~~d~G~Y~C~a~ 63 (626)
+.++|.|..... ....|.|.|-.. .| .. .+|..... +.+|.|.+|+.+|+|.|+|...
T Consensus 1 ~~vtL~C~~~~~~~~~qV~W~k~~~~~~~~iavy~~~~g~~~~~~y~~Rv~f~~~~~~d~sI~i~nvt~~D~G~Y~C~~~ 80 (96)
T cd05889 1 EKMKLECVYPKTGVLIQVSWTKHNGSHKENIAVYHPIYGMHIEDKYRGRVYFLNSTREDMSLSFNNATEEDVGLYCCSLV 80 (96)
T ss_pred CCEEEEeEcCCCCcEEEEEEEEcCCCCCceEEEEECCCCCEECccccCeEEEecCCCCccEEEEcCCCcccCEEEEEEEE
Confidence 578999998543 345899998421 11 11 14555542 4689999999999999999997
Q ss_pred cC-CCCce
Q psy12061 64 NV-HGMDE 70 (626)
Q Consensus 64 n~-~g~~~ 70 (626)
.- .|...
T Consensus 81 t~P~g~~~ 88 (96)
T cd05889 81 TYPQGSWE 88 (96)
T ss_pred eCCCCCeE
Confidence 54 34433
No 305
>PF10179 DUF2369: Uncharacterised conserved protein (DUF2369); InterPro: IPR019326 This is a proline-rich region of a group of proteins found from plants to fungi. The function is largely unknown, although the entry contains Fibronectin type-III domain-containing protein C4orf31, which promotes matrix assembly and cell adhesiveness.
Probab=98.09 E-value=0.0015 Score=59.02 Aligned_cols=133 Identities=17% Similarity=0.220 Sum_probs=79.6
Q ss_pred eEEEEeCCCcceeEEEEEEEEecCCCCCCCCccEE-EEcc---CCCCCCCCCceEEEe----eecceEEEEeeecccccc
Q psy12061 348 IAVVRIPSEFYYTEYEVKVQAINDVGPGPESEVVT-IFSA---EDMPQVAPQGVFSRG----FNSTAINVTWNPIELIRE 419 (626)
Q Consensus 348 ~~~~~~~~L~p~~~Y~~~v~a~n~~g~~~~s~~~~-~~t~---~~~p~~~p~~~~~~~----~~~~si~l~W~~~~~~~~ 419 (626)
-..+.+.++.|+..|.+++.+.|.... ..+.-+. ..+. ...|. -|.+..+.. .+.++++|.|.+..+..
T Consensus 127 ~~~f~l~~~~~g~~Yliri~~~~~~e~-~~~~kV~aast~~~~~~~P~-LP~d~~Ik~f~~lrtC~SvTIAW~~s~d~~- 203 (300)
T PF10179_consen 127 LRHFRLSGVKPGERYLIRIQISNSDEG-PSTFKVQAASTNPSKQPYPQ-LPDDTSIKEFNKLRTCNSVTIAWLGSPDRS- 203 (300)
T ss_pred eEEEEECCCCCCCeEEEEEEccCCCCC-ceEEEEEEecCCcccCCCCC-CCCCCceeEEcCCcccceEEEEEecCCCCC-
Confidence 356789999999999999988765432 2122222 2222 22343 455665543 45689999999765421
Q ss_pred ccceeeEEEEEEEEecCCC----------------c---cc--eEE--EEecC----cc---ceEEEeCCccCceEEEEE
Q psy12061 420 NIRGRLIGHRIKYWKEDNP----------------E---ET--AVY--YLSRT----TR---NWALIVGLQPDTKYYVKV 469 (626)
Q Consensus 420 ~~~~~i~~Y~v~~~~~~~~----------------~---~~--~~~--~~~~~----~~---~~~~i~~L~p~t~Y~v~V 469 (626)
..|.|..++.... . .. ... ..... .. ...+|.+|+||+.|.|.|
T Consensus 204 ------~kYCvy~~~~~~~~~~~~~~~~~n~C~~~~sr~k~e~v~Ck~~~~~n~~~~~~~~v~tetI~~L~PG~~Yl~dV 277 (300)
T PF10179_consen 204 ------IKYCVYRREEHSNYQERSVSRMPNQCLGPESRKKSEKVLCKYFHSPNSSEDPQRAVTTETIKGLKPGTTYLFDV 277 (300)
T ss_pred ------ceEEEEEEEecCchhhhhhcccCccCCCCCccccceEEEEEEEcCCccccccccccceeecccCCCCcEEEEEE
Confidence 3688877654432 0 00 001 11111 11 234799999999999999
Q ss_pred EEeeCCCCCCCCccEEEeec
Q psy12061 470 MAYNNAGEGPESERYLERTY 489 (626)
Q Consensus 470 ~a~~~~g~s~~s~~~~~~t~ 489 (626)
.+.-..|.+-.-....+.|.
T Consensus 278 ~~~~~~G~sl~Y~s~~VkTr 297 (300)
T PF10179_consen 278 YVNGPSGQSLPYRSKWVKTR 297 (300)
T ss_pred EEecCCCceeecceEEEEec
Confidence 99887776544344445443
No 306
>cd00098 IgC Immunoglobulin Constant domain. IgC: Immunoglobulin constant domain (IgC). Members of the IgC family are components of immunoglobulin, T-cell receptors, CD1 cell surface glycoproteins, secretory glycoproteins A/C, and Major Histocompatibility Complex (MHC) class I/II molecules. In immunoglobulins, each chain is composed of one variable domain (IgV) and one or more IgC domains. These names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. The IgV domain is responsible for antigen binding, and the IgC domain is involved in oligomerization and molecular interactions.
Probab=98.07 E-value=1.1e-05 Score=61.02 Aligned_cols=71 Identities=18% Similarity=0.305 Sum_probs=49.2
Q ss_pred ecCCcEEEEEEecccCCcceeEEEeeCCEEeccccCCccCCCeeEec------CCeEEEeecCCCCCEeEEEEEEeCCCc
Q psy12061 94 AAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINID------GGLLEITNASFADAGEYECVVKSTVGK 167 (626)
Q Consensus 94 ~~g~~~~l~C~~~~~p~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~------~~~l~i~~~~~~d~g~Y~C~a~n~~g~ 167 (626)
..|+.++|.|.+.+..++.++++|++||..+....... ...... .+.|.|......|.+.|+|.|.+....
T Consensus 11 ~~~~~~~L~C~a~g~~P~~~~i~W~~~g~~~~~~~~~~---~~~~~~~gt~~~~s~l~v~~~~~~~~~~y~C~v~h~~~~ 87 (95)
T cd00098 11 LLGGSVTLTCLATGFYPPDITVTWLKNGKELTSGVTTT---PPVPNSDGTYSVSSQLTVSPSDWNSGDTYTCVVTHESLP 87 (95)
T ss_pred HcCCCeEEEEEEeeEECCCcEEEEEECCEECCCceecc---ccccCCCCCEEEEEEEEECHHHhCCCCCEEEEEEeCCCC
Confidence 57899999999999854557889999999987543100 011112 234555555556999999999887653
No 307
>KOG3632|consensus
Probab=98.06 E-value=2.7e-05 Score=78.85 Aligned_cols=265 Identities=18% Similarity=0.211 Sum_probs=159.0
Q ss_pred CCceeEeecCCcCeEEEEEeeCCCCCcccCcceEEEEEEecCCCcceeeeeeeecceeeEEEEeCCCc-ceeEEEEEEEE
Q psy12061 290 APSRIGGGGGKIGDLSISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETLKEYGNVGIAVVRIPSEF-YYTEYEVKVQA 368 (626)
Q Consensus 290 ~p~~~~~~~~~~~~v~l~W~~~~~~~~~~~~~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~-p~~~Y~~~v~a 368 (626)
-|..+.+......++.|.|+++.....-.+...|.+.....- .+..... + .+...++.|. .+..|.+.|.+
T Consensus 580 ypr~~~~vkqla~sv~vawepps~pP~~~~~~~~~~~v~~el---rq~l~~g---s--~tka~~E~ld~~a~s~~isvq~ 651 (1335)
T KOG3632|consen 580 YPRTGAAVKQLAGSVHVAWEPPSSPPFTAPARMIGATVLMEL---RQTLYAG---S--LTKAMQESLDNSAHSGYISVQR 651 (1335)
T ss_pred cccchhhhhhhccceeeeccCCCCCCccccceeeeeecchhh---hhhcccc---c--chHHHHhhccccCCceeeehhh
Confidence 344555566667899999998544444455555655332111 0101110 0 0011122221 34567788889
Q ss_pred ecCCCCCCCCccEEEEccCCCCCCCCCceEEEeeecceEEEEeeeccccccccceeeEEEEEEEEecCCCccceEEEEec
Q psy12061 369 INDVGPGPESEVVTIFSAEDMPQVAPQGVFSRGFNSTAINVTWNPIELIRENIRGRLIGHRIKYWKEDNPEETAVYYLSR 448 (626)
Q Consensus 369 ~n~~g~~~~s~~~~~~t~~~~p~~~p~~~~~~~~~~~si~l~W~~~~~~~~~~~~~i~~Y~v~~~~~~~~~~~~~~~~~~ 448 (626)
..+.|.+...... .-+...++. .|.++++.+++.++..++|-+-...- -.+.|....... ...
T Consensus 652 ltSrGsqd~lrc~-Llvgg~a~v-vpsqlrv~n~tqtSa~itwvp~nsn~---------~Hviyln~eE~~------ps~ 714 (1335)
T KOG3632|consen 652 LTSRGSQDQLRCI-LLVGGAAPV-VPSQLRVWNATQTSAMITWVPFNSNF---------LHVIYLNAEEPR------PSV 714 (1335)
T ss_pred hhccCCCCcceee-Eeccccccc-cchhhhhhhhhchhhheeeeecCCCc---------ceeeecCCccCC------Cch
Confidence 9888887655443 334455665 89999999999999999998764321 123332211111 122
Q ss_pred CccceEEEeCCccCceEEEEEEEeeC-CCC--------CCCCccEEEeecCCCCCCCCceEEEeee-CCCEEEEEEeecC
Q psy12061 449 TTRNWALIVGLQPDTKYYVKVMAYNN-AGE--------GPESERYLERTYRKAPQKPPSAVHIKGI-NPTTVHVTWRYVS 518 (626)
Q Consensus 449 ~~~~~~~i~~L~p~t~Y~v~V~a~~~-~g~--------s~~s~~~~~~t~~~~p~~~p~~l~~~~~-~~~~~~l~W~~~~ 518 (626)
.....+++.+|.|++.|.++|-|.-. .+. +.....+.|+|....|+.||.++.+..- .+..+.++|.|+.
T Consensus 715 a~~y~ytf~~lrpgt~y~a~vea~~p~q~pwdl~~v~~etr~atv~f~tLpAGppappldV~vE~g~spg~l~vswrPpt 794 (1335)
T KOG3632|consen 715 AEMYNYTFMRLRPGTDYWASVEAALPRQEPWDLRMVPMETRQATVLFRTLPAGPPAPPLDVKVETGGSPGRLEVSWRPPT 794 (1335)
T ss_pred hhhhHHHHhccCCCCccceecccccCcCCCcccccchhhhhccceeeecccCCCCCCchheeeecCCCCceeeeeccCce
Confidence 33445889999999999999998765 211 2234567899999999999999987754 6788999999643
Q ss_pred CCCC----CCceeeEEEEEEEeccCCccccceeeecCccceEEecCCCC-CceEEEEEEEEecCCCCCCCC
Q psy12061 519 PSFE----EEPIIGYKVRVWEVDQDMSRANDTIIPVGNTLDADIVDLSP-GKRYHMRVLAFSNGGDGRMSS 584 (626)
Q Consensus 519 ~~~~----~~~i~~Y~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~p-~~~Y~~~V~a~~~~G~g~~s~ 584 (626)
-+.. .-.+++|.|+.. +... .+........+.+.+..|.- ...=.+.|+.....|++-.|-
T Consensus 795 ldsag~sngv~vtgYavyad--gqkv---~Evafptagst~VelsQlq~~l~~~~V~vRtms~~gesvdsi 860 (1335)
T KOG3632|consen 795 LDSAGCSNGVAVTGYAVYAD--GQKV---EEVAFPTAGSTKVELSQLQDGLYHGAVGVRTMSVPGESVDSI 860 (1335)
T ss_pred eccccccCceeeeeeeeeeC--Ccee---eeeecccCCceEEEeeeehhhheecceeEEecccCccccccc
Confidence 3222 237899999532 2221 11222223334445555554 334467788877778766553
No 308
>cd05711 Ig_FcalphaRI Immunoglobulin (IG)-like domain of of FcalphaRI. IG_FcalphaRI : immunoglobulin (IG)-like domain of of FcalphaRI. FcalphaRI (CD89) is an IgA-specific receptor that is expressed on monocytes, eosinophils, neutrophils and macrophages. FcalphaRI mediates IgA-induced immune effector responses such as phagocytosis, antibody-dependent cell-mediated cytotoxicity and respiratory burst. Both monomeric and dimeric IgA can bind to FcalphaRI, and monomeric or dimeric IgA immune complexes can activate phagocytosis and other immune responses through the clustering of FcalphaRI. The Fc RI ectodomain is comprised of two Ig-like domains oriented at about 90 degree to each another.
Probab=98.06 E-value=2.6e-05 Score=58.30 Aligned_cols=69 Identities=19% Similarity=0.272 Sum_probs=47.5
Q ss_pred CCceEEecCCcEEEEEEecccCCcceeEEEeeCCEEeccccCCccCCCeeEecCCeEEEeecCCCCCEeEEEEEE
Q psy12061 88 PPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEITNASFADAGEYECVVK 162 (626)
Q Consensus 88 ~~~~~v~~g~~~~l~C~~~~~p~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~a~ 162 (626)
+....|..|++++|.|..... ...+.|+|+|..............+ ....|.|.+++.+|+|.|+|...
T Consensus 7 ~p~~vV~~G~~VTL~C~~~~~---~~~f~l~k~g~~~~~~~~~~~~~~~---~~a~f~I~~~~~~~~G~Y~C~~~ 75 (94)
T cd05711 7 HPSPVVPSGENVTLQCHSDIR---FDRFILYKEGRSKPVLHLYEKHHGG---FQASFPLGPVTPAHAGTYRCYGS 75 (94)
T ss_pred cCCCccCCCCeEEEEEecCCC---CCEEEEEECCCCCCceecccccCCe---EEEEEEecCCCcccCEEEEEEEE
Confidence 346678899999999977652 2367999998764321100000011 23378999999999999999875
No 309
>cd05888 Ig1_Nectin-4_like Frst immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor) and similar proteins. Ig1_Nectin-4_like: domain similar to the first immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor). Nectin-4 belongs to the nectin family, which is comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example nectin-4 trans-interacts with nectin-1. Nectin-4 has also been shown to interact with the actin filament-binding protein, afadin. Unlike the other nectins, which are widely expressed in adult tissues, nectin-4 is mainly expressed during embryogenesis, and is not detected in normal adult
Probab=98.05 E-value=8.5e-05 Score=56.41 Aligned_cols=79 Identities=23% Similarity=0.373 Sum_probs=51.2
Q ss_pred cEEEEEEecccCCc-ceeEEEeeC--CE-E--ec---c---ccCCccCCCeeEe------cCCeEEEeecCCCCCEeEEE
Q psy12061 98 NLQLRCSAHTEELL-DVAYIWTHN--GV-R--IG---N---MDLNELETPNINI------DGGLLEITNASFADAGEYEC 159 (626)
Q Consensus 98 ~~~l~C~~~~~p~p-~~~i~W~~~--~~-~--~~---~---~~~~~~~~~~~~~------~~~~l~i~~~~~~d~g~Y~C 159 (626)
+++|.|.....+.. ...+.|+|. +. + +. . ......-.+|... .+.+|.|.+++.+|+|.|.|
T Consensus 2 ~v~L~C~~~~~~~~~~~~v~W~k~~~~~~~~~i~~~~~~~~~~~~~~~~~Rv~f~~~~~~~~~sL~I~nv~~sD~GtY~C 81 (100)
T cd05888 2 DTRLPCRYNVSDGETVVQVLWIRENAGGVEEEIALLHFKYGQTEFHAYEGRVRFETPNPIADGALILRNAVQADEGKYKC 81 (100)
T ss_pred CEEEEeEEecCCCCcEEEEEEEEccCCCCcEEEEEEeccCCcccCCCccCcEEEeCCCCCCceEEEEecCccccceEEEE
Confidence 68999998755422 347899983 21 1 11 0 0111110123222 35689999999999999999
Q ss_pred EEEe-CCCceEEEEEEEE
Q psy12061 160 VVKS-TVGKISTKTTVIV 176 (626)
Q Consensus 160 ~a~n-~~g~~~~~~~l~v 176 (626)
.+.+ ..|..+..+.|.|
T Consensus 82 ~v~~~p~g~~~~~~~L~V 99 (100)
T cd05888 82 RVITFPAGNFEAELVLTV 99 (100)
T ss_pred EEEeCCCCCeeeEEEEEe
Confidence 9998 7777777777776
No 310
>PF07686 V-set: Immunoglobulin V-set domain; InterPro: IPR013106 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the V-set domains, which are Ig-like domains resembling the antibody variable domain. V-set domains are found in diverse protein families, including immunoglobulin light and heavy chains; in several T-cell receptors such as CD2 (Cluster of Differentiation 2), CD4, CD80, and CD86; in myelin membrane adhesion molecules; in junction adhesion molecules (JAM); in tyrosine-protein kinase receptors; and in the programmed cell death protein 1 (PD1).; PDB: 1PY9_A 2NXY_D 1U9K_B 3RNK_A 3BP6_A 3BIK_B 3SBW_A 1NPU_A 3BP5_A 3RNQ_A ....
Probab=98.04 E-value=2.3e-05 Score=61.89 Aligned_cols=89 Identities=19% Similarity=0.244 Sum_probs=55.6
Q ss_pred CCCceEEecCCcEEEEEEecccCCcceeEEEeeCCE-----Eec----cc---cCCccCCCeeE--ec----CCeEEEee
Q psy12061 87 LPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGV-----RIG----NM---DLNELETPNIN--ID----GGLLEITN 148 (626)
Q Consensus 87 ~~~~~~v~~g~~~~l~C~~~~~p~p~~~i~W~~~~~-----~~~----~~---~~~~~~~~~~~--~~----~~~l~i~~ 148 (626)
+|..+.+.+|++++|.|... .......+.|++... .+. .. .....-..+.. .. ...|.|.+
T Consensus 7 ~~~~v~~~~G~~v~L~C~~~-~~~~~~~v~W~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~i~~ 85 (114)
T PF07686_consen 7 PPSPVTVQEGESVTLPCSYS-SSSNQSSVYWYRQSPGQGPQLIIRYSLSSTNETPTPSYSGRFTFSGNGSQNNFSLTIKN 85 (114)
T ss_dssp EESEEEEETTSEEEEEEEEE-SSSSGSEEEEEEEETTSEEEEEEEEETTEEEEEEETTETTTEEEEEETTTTEEEEEESS
T ss_pred eCCeEEEecCCCEEEEEEEe-CCCCcceEEEEEECccccceeeeeeccceeeeccccceeeeeeeeecccCCeEEEEECC
Confidence 46778899999999999999 223345678998322 111 00 00000112222 12 23799999
Q ss_pred cCCCCCEeEEEEEEeC-CCceEEEEEEEE
Q psy12061 149 ASFADAGEYECVVKST-VGKISTKTTVIV 176 (626)
Q Consensus 149 ~~~~d~g~Y~C~a~n~-~g~~~~~~~l~v 176 (626)
++.+|+|.|.|.+... .......+.|.|
T Consensus 86 l~~~DsG~Y~C~v~~~~~~~~~~~~~L~V 114 (114)
T PF07686_consen 86 LQPSDSGTYFCQVSTSNEQSFGNGTKLTV 114 (114)
T ss_dssp ESGGGEEEEEEEEEESSEEEEEEEEEEEE
T ss_pred CCcCcCEEEEEEEEECCCCEECCcEEEEC
Confidence 9999999999999876 333445555544
No 311
>cd00096 Ig Immunoglobulin domain. Ig: immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of this group are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as, T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as, butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=98.02 E-value=2.1e-05 Score=55.85 Aligned_cols=59 Identities=34% Similarity=0.576 Sum_probs=45.7
Q ss_pred EEEEeeeCCCCCCeeEEEeCCEEccCCCcE-------EEccCCcEEEccCCCCCCEEEEEEEEcCC
Q psy12061 8 VTIFCNPEAAPKPKFVWKKDGNIIGSGGRR-------KIFENGNLLISPVSRDDSGIYSCTATNVH 66 (626)
Q Consensus 8 ~~l~C~~~g~p~p~i~W~~~~~~i~~~~~~-------~~~~~g~L~i~~v~~~d~G~Y~C~a~n~~ 66 (626)
+.|.|.+.+.+.+.+.|++++......... .......|.|.+++.+|.|.|.|.+.+..
T Consensus 1 ~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~ 66 (74)
T cd00096 1 VTLTCLASGPPPPTITWLKNGKPLPSSVLTRVRSSRGTSSGSSTLTISNVTLEDSGTYTCVASNSA 66 (74)
T ss_pred CEEEEEecCCCCCcEEEEECCEECCCcccEEeccccCcceeEEEEEECccCcccCcEEEEEEecCc
Confidence 479999999778899999998877543211 11222369999999999999999998775
No 312
>cd05901 Ig_Versican Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican. Ig_Versican: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Like aggrecan, versican has a wide distribution in connective tissue and extracellular matrices. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA
Probab=98.01 E-value=5.5e-05 Score=57.95 Aligned_cols=83 Identities=19% Similarity=0.274 Sum_probs=56.0
Q ss_pred CCcEEEEEEecccCC---------cceeEEEeeC-----CEEeccccC----------CccCCCeeEe-------cCCeE
Q psy12061 96 HRNLQLRCSAHTEEL---------LDVAYIWTHN-----GVRIGNMDL----------NELETPNINI-------DGGLL 144 (626)
Q Consensus 96 g~~~~l~C~~~~~p~---------p~~~i~W~~~-----~~~~~~~~~----------~~~~~~~~~~-------~~~~l 144 (626)
|.+++|.|...-.|. ..+.|.|.+- |.......+ ...-.+|..+ ++-+|
T Consensus 2 ~g~v~LPC~f~~~p~~p~~~~~~~~~~rIkW~~~~~~~~g~~~~e~~Vlv~~~g~~~~~~~y~gRv~l~~~~~~~g~asL 81 (117)
T cd05901 2 SGSVVLPCRFSTLPTLPPSVITTSEFLRIKWTKIEVDKNGKDHKETTVLVAQNGIIKIGQEYMGRVSVPSHPEDQGDASL 81 (117)
T ss_pred CCCEEEeeEEEecCCCCCcccCCCCCcEEEEEEecccccccCCCccEEEEEECCEEEECCcccCcEEeeccCCcCCceEE
Confidence 678999999885542 2356788763 111100000 0011234443 35689
Q ss_pred EEeecCCCCCEeEEEEEEeCCCceEEEEEEEEeC
Q psy12061 145 EITNASFADAGEYECVVKSTVGKISTKTTVIVEG 178 (626)
Q Consensus 145 ~i~~~~~~d~g~Y~C~a~n~~g~~~~~~~l~v~~ 178 (626)
.|.+++.+|+|.|+|.+.......+..+.|.|.+
T Consensus 82 ~i~~v~~sD~G~Y~C~V~~g~~~~~~~v~L~V~G 115 (117)
T cd05901 82 TIVKLRASDAGVYRCEVMHGIEDTQDTVSLDVSG 115 (117)
T ss_pred EEcccccccCEEEEEEEEECCcccEEEEEEEEEE
Confidence 9999999999999999999998889999988864
No 313
>cd07692 Ig_CD3_epsilon Immunoglobulin (Ig)-like domain of CD3 epsilon chain. Ig_CD3_epsilon; immunoglobulin (Ig)-like domain of CD3 epsilon chain. CD3 is a T cell surface receptor that is associated with alpha/beta T cell receptors (TCRs). The CD3 complex consists of one gamma, one delta, two epsilon, and two zeta chains. The CD3 subunits form heterodimers as gamma/epsilon, delta/epsilon, and zeta/zeta. The gamma, delta, and epsilon chains each contain an extracellular Ig domain, whereas the extracellular domains of the zeta chains are very small and have unknown structure. The CD3 domain participates in intracellular signalling once the TCR has bound an MHC/antigen complex.
Probab=98.01 E-value=1.3e-05 Score=52.86 Aligned_cols=52 Identities=29% Similarity=0.490 Sum_probs=37.2
Q ss_pred CCCceEEEEeeeCCCCCCeeEEEeCCEEccCCCcEEEccCCcEEEccCCCCCCEEEEEEEEcC
Q psy12061 3 GEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTATNV 65 (626)
Q Consensus 3 ~~G~~~~l~C~~~g~p~p~i~W~~~~~~i~~~~~~~~~~~g~L~i~~v~~~d~G~Y~C~a~n~ 65 (626)
+.|.+|+|+|...+. .|.|++|+..+..++.. +.+.+-. +++|.|+|.+.+.
T Consensus 5 isGTtVtlTCP~~~~---~i~W~~n~~~~~g~~~~-------~~~~~~~-e~~G~Y~C~~~~~ 56 (65)
T cd07692 5 ISGTTVTVTCPLSGD---DIKWKKNDQVSQGSDEK-------YLSLNHF-SSSGYYHCTADNA 56 (65)
T ss_pred EeccEEEEECCCCCC---CceEEeCCccCCCCCce-------EEeeccC-CCCceEEEEeCCC
Confidence 468999999987644 39999999766543222 3333444 8999999999643
No 314
>cd05902 Ig_Neurocan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan. Ig_Neurocan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Unlike aggrecan which is widely distributed in connective tissue and extracellular matrices, neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many differen
Probab=98.00 E-value=4.8e-05 Score=58.27 Aligned_cols=83 Identities=14% Similarity=0.234 Sum_probs=55.0
Q ss_pred CCcEEEEEEecccCC-----cceeEEEeeC-----CEEec----cccC---CccCCCeeEe-------cCCeEEEeecCC
Q psy12061 96 HRNLQLRCSAHTEEL-----LDVAYIWTHN-----GVRIG----NMDL---NELETPNINI-------DGGLLEITNASF 151 (626)
Q Consensus 96 g~~~~l~C~~~~~p~-----p~~~i~W~~~-----~~~~~----~~~~---~~~~~~~~~~-------~~~~l~i~~~~~ 151 (626)
|.+++|.|...-.|. ..+.|.|.|- ..... .... ...-.+|..+ ++-+|+|.+++.
T Consensus 2 ~~~v~LpC~~~~~p~~~~~~~~~~I~W~k~~~~~~~~~~~v~v~~~~~~~~~~~y~gRvsl~~~~~~~~~asL~i~nv~~ 81 (110)
T cd05902 2 SSSVLLPCVFTLPPSASSPPEGPRIKWTKLRPASGQKQRPVLVARDNVVRVAKAFQGRVSLPGYPKNRYNASLVLSRLRY 81 (110)
T ss_pred CCcEEEeeEEEcCccccCCCCCCEEEEEEeCCCCCceEEEEEECCCCcEEEchhcccEEEeecCCCCCceEEEEECCCCH
Confidence 788999999764432 1356789874 11111 0000 0111234444 245899999999
Q ss_pred CCCEeEEEEEEeCCCceEEEEEEEEeC
Q psy12061 152 ADAGEYECVVKSTVGKISTKTTVIVEG 178 (626)
Q Consensus 152 ~d~g~Y~C~a~n~~g~~~~~~~l~v~~ 178 (626)
+|+|.|+|.+.......+..+.|.|.+
T Consensus 82 ~D~G~Y~C~v~~g~~~~~~~v~L~V~g 108 (110)
T cd05902 82 SDSGTYRCEVVLGINDEQDTVPLEVTG 108 (110)
T ss_pred HHCEEEEEEEEECCcccEEEEEEEEEE
Confidence 999999999998777778888888764
No 315
>PHA02987 Ig domain OX-2-like protein; Provisional
Probab=97.98 E-value=8.4e-05 Score=60.92 Aligned_cols=89 Identities=20% Similarity=0.346 Sum_probs=60.8
Q ss_pred ceEEecCCcEEEEEEec-ccCCcceeEEEeeCCEEeccccC-----CccCCCeeEe-----cCCeEEEeecCCCCCEeEE
Q psy12061 90 KITIAAHRNLQLRCSAH-TEELLDVAYIWTHNGVRIGNMDL-----NELETPNINI-----DGGLLEITNASFADAGEYE 158 (626)
Q Consensus 90 ~~~v~~g~~~~l~C~~~-~~p~p~~~i~W~~~~~~~~~~~~-----~~~~~~~~~~-----~~~~l~i~~~~~~d~g~Y~ 158 (626)
...|.+|++++|.|... +... ..++|+|....+..-.. ...-..|+.. .+..|.|.+++++|+|.|+
T Consensus 24 ~v~V~ege~VtLsCs~t~s~~~--~qVtWkK~~~~IatY~~~g~~i~~~Fk~Rve~mS~s~~~StItIknVt~sDeGcY~ 101 (189)
T PHA02987 24 KITVSEHVNVKISCNKTSSFNS--ILITWKKNNKTIAGYGPCGPVIVDKFKNKIEYLSKSFNESTILIKNVSLKDNGCYT 101 (189)
T ss_pred EEEEcCCCCEEEEEecCCCCcc--ceEEEEEcCCCEEEEecCCcEEChhhcCeEEEeccCCCcceEEEEeCChhhCeEEE
Confidence 46789999999999975 4333 35799997443321110 0000135554 6789999999999999999
Q ss_pred EEEEe-CCC-ceEEEEEEEEeCCC
Q psy12061 159 CVVKS-TVG-KISTKTTVIVEGPP 180 (626)
Q Consensus 159 C~a~n-~~g-~~~~~~~l~v~~~P 180 (626)
|...- ..| ..+..+-|.|...-
T Consensus 102 C~F~tfp~G~~~~gt~CLtVt~~~ 125 (189)
T PHA02987 102 CIFNTLLSKNNEKGVVCLNVTTDS 125 (189)
T ss_pred EEEEecCCCCCceeEEEEEEEchh
Confidence 98764 455 67778888887543
No 316
>cd05883 Ig2_Necl-2 Second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Ig2_Necl-2: second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Nectin-like molecules (Necls) have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is expressed in a wide variety of tissues, and is a putative tumour suppressor gene, which is downregulated in aggressive neuroblastoma. Ig domains are likely to participate in ligand binding and recognition.
Probab=97.97 E-value=7e-05 Score=53.28 Aligned_cols=77 Identities=16% Similarity=0.182 Sum_probs=49.5
Q ss_pred EEEEEEecccCCcceeEEEeeCCEEeccccCCccCCCeeEecCCeEEEeecCCCCCEeEEEEEEeCCCc-eEEEEEEEE
Q psy12061 99 LQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEITNASFADAGEYECVVKSTVGK-ISTKTTVIV 176 (626)
Q Consensus 99 ~~l~C~~~~~p~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~a~n~~g~-~~~~~~l~v 176 (626)
+.|.|.+.+..++ ..|.|+|++.++.................+.|.|..-...|...|+|.|.|..-. .+....|.|
T Consensus 2 ~~L~C~s~gSkP~-A~I~W~k~~~~l~~~~~~~~~~~~~~t~~S~L~~~p~~eDdG~~~~C~a~~~~l~~~~~~~~L~V 79 (82)
T cd05883 2 IELNCTAMASKPA-ATIRWFKGNKELTGKSTVEETWSRMFTVTSQLMLKVTKEDDGVPVICLVDHPAVKDLQTQRYLEV 79 (82)
T ss_pred EEEEEEecCCCCC-CEEEEEECCEECcCcccceeccCCCcEEEEEEEEECchhhCCCEEEEEEcCcccCCceeeEEEEE
Confidence 6899999986543 4789999999997642100011122224467888776667777999999886532 344444444
No 317
>cd05772 IgC_SIRP Signal-regulatory protein (SIRP) immunoglobulin-like domain. IgC_SIRP: Immunoglobulin-like domain of signal-regulatory proteins (SIRP); the signal-regulatory proteins (SIRP) are Ig-like cell surface receptors detected in hematopoietic and non-hematopoietic cells. While their extracellular domains are similar, SIRP are classified as alpha or beta based on the length of the intracytoplasmic domain. Those having a 110- to 113-amino acid tail are classified as SIRP-alpha, and those having a 5-amino acid tail as SIRP-beta. SIRP-alpha and SIRP-beta molecules are thought to have complementary roles in signal regulation: SIRP-alpha inhibit signalling via their immunoreceptor tyrosine (IT)-based inhibition motifs while SIRP-beta are activating. SIRP-beta lack the cytoplasmic domainof SIRP-alpha, and associate with at least one other transmembrane protein (DAP-12 or KARAP). The IT-based activation motifs within DAP-12's cytoplasmic domain may link SIRP-beta to the activating
Probab=97.97 E-value=6.6e-05 Score=57.69 Aligned_cols=88 Identities=18% Similarity=0.192 Sum_probs=52.0
Q ss_pred EEeCCceeeeCCCceEEecCCcEEEEEEecccCCcceeEEEeeCCEEeccccCCcc--CCCeeEecCCeEEEeecCCCCC
Q psy12061 77 VLHGPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNEL--ETPNINIDGGLLEITNASFADA 154 (626)
Q Consensus 77 v~~~p~~~~~~~~~~~v~~g~~~~l~C~~~~~p~p~~~i~W~~~~~~~~~~~~~~~--~~~~~~~~~~~l~i~~~~~~d~ 154 (626)
|..+|......+.......|+.++|.|.+.+--++.++++|+|||..+........ .+...-.-.+.|.+.. ...|.
T Consensus 2 v~~~P~~p~i~~~~~~~~~g~~~tL~C~a~gF~P~~i~v~W~kng~~~~~~~~~~~p~~d~~ty~~~S~L~~~~-~~~d~ 80 (111)
T cd05772 2 VRAKPSVPVVSGPSGRANPGQSVNFTCSAHGFSPRDITVKWLKNGNELSAEQPNITPEGDSVSYNVTSTVQVKL-TEDDV 80 (111)
T ss_pred cccCCCCcEeCCchhccCCCCCEEEEEEEeeEeCCCCEEEEEECCEECcccccceeeCCCCCcEEEEEEEEEEC-ccccc
Confidence 34455554444445556789999999999996666789999999999864310000 0000000122333333 34444
Q ss_pred E-eEEEEEEeCC
Q psy12061 155 G-EYECVVKSTV 165 (626)
Q Consensus 155 g-~Y~C~a~n~~ 165 (626)
| .|+|.+....
T Consensus 81 ~~~ytC~V~H~~ 92 (111)
T cd05772 81 HSQVTCEVQHRT 92 (111)
T ss_pred cCceEEEEEeCC
Confidence 4 5999998764
No 318
>cd04981 IgV_H Immunoglobulin (Ig) heavy chain (H), variable (V) domain. IgV_H: Immunoglobulin (Ig) heavy chain (H), variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which can associate with any of the heavy chains. This family includes alpha, gamma, delta, epsilon, and mu heavy chains.
Probab=97.96 E-value=3.2e-05 Score=60.65 Aligned_cols=63 Identities=17% Similarity=0.405 Sum_probs=44.8
Q ss_pred CCCCceEEEEeeeCCCC--CCeeEEEe---CCEE--c---c-----------CCCcEEEccCC-----cEEEccCCCCCC
Q psy12061 2 AGEGGNVTIFCNPEAAP--KPKFVWKK---DGNI--I---G-----------SGGRRKIFENG-----NLLISPVSRDDS 55 (626)
Q Consensus 2 ~~~G~~~~l~C~~~g~p--~p~i~W~~---~~~~--i---~-----------~~~~~~~~~~g-----~L~i~~v~~~d~ 55 (626)
|.+|++|+|.|...+.- ...+.||| ++.+ | . ..+|+.+..+. +|.|.+++.+|+
T Consensus 9 v~~G~~vtL~C~~~~~~~~~~~~~WYkQ~~g~~p~~l~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~I~~~~~~Ds 88 (117)
T cd04981 9 VKPGQSLKLSCKASGFTFTSYGVNWVRQAPGKGLEWIGFINPGGGETYYADSVKGRFTITRDTSKSTVYLQLNSLTPEDT 88 (117)
T ss_pred EcCCCCEEEEEEEeCCCcccceEEEEEECCCCCcEEEEEEecCCCceEeCcccCCcEEEEEEccCCEEEEEECCCCHHHC
Confidence 57899999999986543 45799998 2222 1 0 02455543222 599999999999
Q ss_pred EEEEEEEEc
Q psy12061 56 GIYSCTATN 64 (626)
Q Consensus 56 G~Y~C~a~n 64 (626)
|.|.|.+..
T Consensus 89 a~YyCa~~~ 97 (117)
T cd04981 89 AVYYCARGL 97 (117)
T ss_pred EEEEEEEEc
Confidence 999999875
No 319
>cd05712 Ig_Siglec_N Immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins). Ig_Siglec_N: immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins). Siglec refers to a structurally related protein family that specifically recognizes sialic acid in oligosaccharide chains of glycoproteins and glycolipids. Siglecs are type I transmembrane proteins, organized as an extracellular module composed of Ig-like domains (an N-terminal variable set of Ig-like carbohydrate recognition domains, and 1 to 16 constant Ig-like domains), followed by transmembrane and short cytoplasmic domains. Human siglecs are classified into two subgroups, one subgroup is comprised of sialoadhesin (Siglec-1), CD22 (Siglec-2), and MAG, the other subgroup is comprised of CD33-related Siglecs which include CD33 (Siglec-3) and human Siglecs 5-11.
Probab=97.95 E-value=5e-05 Score=59.97 Aligned_cols=64 Identities=27% Similarity=0.329 Sum_probs=44.5
Q ss_pred CCCCceEEEEeeeCCCC------CCeeEEEeCCE------Ec--c---------CCCcEEEcc---CC--cEEEccCCCC
Q psy12061 2 AGEGGNVTIFCNPEAAP------KPKFVWKKDGN------II--G---------SGGRRKIFE---NG--NLLISPVSRD 53 (626)
Q Consensus 2 ~~~G~~~~l~C~~~g~p------~p~i~W~~~~~------~i--~---------~~~~~~~~~---~g--~L~i~~v~~~ 53 (626)
|.+|++|+|.|.....+ ...+.|+|... .+ . ..+|+.+.. .+ +|.|.+++.+
T Consensus 11 ~~~G~~VtL~C~f~~~~~~~~~~~~~~~Wykq~~g~~~~~~~~~~~~~~~~~~~f~gR~~~~~~~~~~~~sL~I~~l~~~ 90 (119)
T cd05712 11 VQEGLCVLIPCSFSYPADWPVSNGVHGIWYKGHPYPKNRPPVATNNRSRLVHESTRGRFRLLGDLGKKNCSLLISDAQPE 90 (119)
T ss_pred EeccccEEEEEEeeCcccccCCCceEEEEEeCCCCCCCCCcEEEcCCCccccccccccEEEecCCCCCEEEEEEccCChh
Confidence 57899999999874221 24699998321 11 0 114655532 22 5999999999
Q ss_pred CCEEEEEEEEcC
Q psy12061 54 DSGIYSCTATNV 65 (626)
Q Consensus 54 d~G~Y~C~a~n~ 65 (626)
|+|.|.|.+...
T Consensus 91 Dsg~Y~C~~~~~ 102 (119)
T cd05712 91 DSGKYFFRVELG 102 (119)
T ss_pred hCeEEEEEEEcC
Confidence 999999998765
No 320
>cd00099 IgV Immunoglobulin variable domain (IgV). IgV: Immunoglobulin variable domain (IgV). Members of the IgV family are components of immunoglobulin (Ig) and T cell receptors. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. Within the variable domain, there are regions of even more variability called the hypervariable or complementarity-determining regions (CDRs) which are responsible for antigen binding. A predominant feature of most Ig domains is the disulfide bridge connecting 2 beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=97.91 E-value=2.5e-05 Score=60.44 Aligned_cols=74 Identities=14% Similarity=0.190 Sum_probs=48.4
Q ss_pred EEecCCcEEEEEEecccCCcceeEEEeeCCE--E---eccccC-----CccCCCeeEe------cCCeEEEeecCCCCCE
Q psy12061 92 TIAAHRNLQLRCSAHTEELLDVAYIWTHNGV--R---IGNMDL-----NELETPNINI------DGGLLEITNASFADAG 155 (626)
Q Consensus 92 ~v~~g~~~~l~C~~~~~p~p~~~i~W~~~~~--~---~~~~~~-----~~~~~~~~~~------~~~~l~i~~~~~~d~g 155 (626)
.+.+|++++|.|.+... .+...+.|++... . +..... ......|+.. ....|+|.+++.+|+|
T Consensus 2 ~v~~G~~v~L~C~~~~~-~~~~~v~W~k~~~~~~~~~i~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~I~~v~~~D~G 80 (105)
T cd00099 2 SVSEGESVTLSCTYSGS-FSSYYIFWYRQKPGKGPELLIYISSNGSQYAGGVKGRFSGTRDSSKSSFTLTISSLQPEDSA 80 (105)
T ss_pred eecCCCCEEEEEEEeCC-cCcceEEEEEECCCCCCEEEEEEeCCCCccCccCCCcEEEEEeccCCEEEEEECCCCHHHCE
Confidence 57899999999999976 1224668997432 1 110000 0011233332 2348999999999999
Q ss_pred eEEEEEEeCCC
Q psy12061 156 EYECVVKSTVG 166 (626)
Q Consensus 156 ~Y~C~a~n~~g 166 (626)
.|.|.+.+..+
T Consensus 81 ~Y~C~v~~~~~ 91 (105)
T cd00099 81 VYYCAVSLSGG 91 (105)
T ss_pred EEEEEEecCCC
Confidence 99999987765
No 321
>smart00060 FN3 Fibronectin type 3 domain. One of three types of internal repeat within the plasma protein, fibronectin. The tenth fibronectin type III repeat contains a RGD cell recognition sequence in a flexible loop between 2 strands. Type III modules are present in both extracellular and intracellular proteins.
Probab=97.91 E-value=0.00019 Score=52.33 Aligned_cols=79 Identities=25% Similarity=0.322 Sum_probs=51.2
Q ss_pred CCCceEEEeeecceEEEEeeeccccccccceeeEEEEEEEEecCCCcc-ceEEEEecCccceEEEeCCccCceEEEEEEE
Q psy12061 393 APQGVFSRGFNSTAINVTWNPIELIRENIRGRLIGHRIKYWKEDNPEE-TAVYYLSRTTRNWALIVGLQPDTKYYVKVMA 471 (626)
Q Consensus 393 ~p~~~~~~~~~~~si~l~W~~~~~~~~~~~~~i~~Y~v~~~~~~~~~~-~~~~~~~~~~~~~~~i~~L~p~t~Y~v~V~a 471 (626)
+|.++.+......++.|+|+++..... .+|.+.|........ .............+.+.+|.|++.|.|+|+|
T Consensus 3 ~p~~~~~~~~~~~~~~v~W~~~~~~~~------~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~~~~~Y~v~v~a 76 (83)
T smart00060 3 PPSNLRVTDVTSTSVTLSWEPPPDDGI------TGYIVGYRVEYREEGSSWKEVNVTPSSTSYTLTGLKPGTEYEFRVRA 76 (83)
T ss_pred CCCcEEEEEEeCCEEEEEECCCCCCCC------CccEEEEEEEEecCCCccEEEEecCCccEEEEeCcCCCCEEEEEEEE
Confidence 455677777777799999997654321 456666644332211 1111111222466999999999999999999
Q ss_pred eeCCCC
Q psy12061 472 YNNAGE 477 (626)
Q Consensus 472 ~~~~g~ 477 (626)
.+..|.
T Consensus 77 ~~~~g~ 82 (83)
T smart00060 77 VNGAGE 82 (83)
T ss_pred EcccCC
Confidence 997554
No 322
>PHA03376 BARF1; Provisional
Probab=97.90 E-value=0.00016 Score=58.80 Aligned_cols=76 Identities=16% Similarity=0.111 Sum_probs=52.5
Q ss_pred ceEEecCCcEEEEEEec-ccCCcceeEEEeeCC----EEec-c------ccCCccCCCeeEe----cCCeEEEeecCCCC
Q psy12061 90 KITIAAHRNLQLRCSAH-TEELLDVAYIWTHNG----VRIG-N------MDLNELETPNINI----DGGLLEITNASFAD 153 (626)
Q Consensus 90 ~~~v~~g~~~~l~C~~~-~~p~p~~~i~W~~~~----~~~~-~------~~~~~~~~~~~~~----~~~~l~i~~~~~~d 153 (626)
.+.+..|+++.|.|... -...+.+.|.|+|.+ ..+- . ..+. ...++..+ ++-+|.|.+++.+|
T Consensus 20 pVta~VGEda~LsC~lnp~ssa~~MrIrWqKs~p~~~~VvL~~~ggdVv~~Qm-EyRGrtD~~~~~gnvsLvI~~l~lSD 98 (221)
T PHA03376 20 AVTAFLGERVTLTSYWRRVSLGPEIEVSWFKLGPGEEQVLIGRMHHDVIFIEW-PFRGFFDIHRSANTFFLVVTAANISH 98 (221)
T ss_pred chhheeCCcEEEEecccCccCCCceEEEEEecCCCCCCEEEEEcCCeeeeeee-ccccEEEEEecCCeEEEEEEeeeecC
Confidence 46778999999999988 344467889999942 1111 0 0111 23345554 44589999999999
Q ss_pred CEeEEEEEEeCCC
Q psy12061 154 AGEYECVVKSTVG 166 (626)
Q Consensus 154 ~g~Y~C~a~n~~g 166 (626)
.|+|+|..+....
T Consensus 99 dGtY~C~fQkge~ 111 (221)
T PHA03376 99 DGNYLCRMKLGET 111 (221)
T ss_pred CceEEEEEEcCCC
Confidence 9999999976443
No 323
>smart00407 IGc1 Immunoglobulin C-Type.
Probab=97.89 E-value=9e-05 Score=52.72 Aligned_cols=59 Identities=22% Similarity=0.438 Sum_probs=41.7
Q ss_pred eEEEEeeeCCC-CC-CeeEEEeCCEEccCCCc---EEEccCC------cEEEccCCCCCCEEEEEEEEcC
Q psy12061 7 NVTIFCNPEAA-PK-PKFVWKKDGNIIGSGGR---RKIFENG------NLLISPVSRDDSGIYSCTATNV 65 (626)
Q Consensus 7 ~~~l~C~~~g~-p~-p~i~W~~~~~~i~~~~~---~~~~~~g------~L~i~~v~~~d~G~Y~C~a~n~ 65 (626)
.++|.|.+.|. |+ .+|+|+|||+++..+.. .....+| .|.|.....++...|+|.|...
T Consensus 1 ~~~L~C~a~gf~P~~i~v~W~k~g~~~~~~~~~~~~~~~~~gt~~~~s~L~v~~~~~~~~~~~tC~V~H~ 70 (75)
T smart00407 1 KATLVCLVSGFYPPDITVTWLRNGQEVTSGVSTTDPLKNSDGTYFLSSYLTVSASTWESGDTYTCQVTHE 70 (75)
T ss_pred CeEEEEEEEeEeCCCCEEEEEECCEECCCCEEECceEECCCCCEEEEEEEEEccccCCCCCEEEEEEEEc
Confidence 37899999997 65 59999999998643311 1112344 3777666677888999999765
No 324
>cd04982 IgV_TCR_gamma Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) gamma chain. IgV_TCR_gamma: immunoglobulin (Ig) variable (V) domain of the gamma chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is
Probab=97.87 E-value=3e-05 Score=61.12 Aligned_cols=78 Identities=15% Similarity=0.240 Sum_probs=50.3
Q ss_pred eCCCceEEecCCcEEEEEEecccCCcceeEEEeeC--CEEec------cccC----CccCCCeeEe------cCCeEEEe
Q psy12061 86 QLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHN--GVRIG------NMDL----NELETPNINI------DGGLLEIT 147 (626)
Q Consensus 86 ~~~~~~~v~~g~~~~l~C~~~~~p~p~~~i~W~~~--~~~~~------~~~~----~~~~~~~~~~------~~~~l~i~ 147 (626)
+.|..+.+.+|++++|.|.+.+...+...+.|+|. +.... .... ......|+.+ ....|.|.
T Consensus 3 Q~p~~~~~~~G~~v~l~C~~~~~~~~~~~v~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~ 82 (116)
T cd04982 3 QPQLSITREESKSVTISCKVSGIDFSTTYIHWYRQKPGQALERLLYVSSTSTQRKLSGGTKNKFEARKDVGKSTSTLTIQ 82 (116)
T ss_pred CcCCeEEeCCCCCEEEEEEEeCCCccccEEEEEEECCCCCCEEEEEEecCCCcEEeCcccCCCEEEEEECCCCEEEEEEE
Confidence 45778889999999999998872222235689984 22110 0000 0011234443 23479999
Q ss_pred ecCCCCCEeEEEEEEe
Q psy12061 148 NASFADAGEYECVVKS 163 (626)
Q Consensus 148 ~~~~~d~g~Y~C~a~n 163 (626)
+++.+|+|.|.|.+..
T Consensus 83 ~~~~~Dsg~Y~C~~~~ 98 (116)
T cd04982 83 NLEKEDSATYYCAYWE 98 (116)
T ss_pred ECCHHHCEEEEEEEec
Confidence 9999999999998864
No 325
>KOG4367|consensus
Probab=97.83 E-value=2.1e-05 Score=71.83 Aligned_cols=81 Identities=21% Similarity=0.359 Sum_probs=64.3
Q ss_pred CCCEEEEEEeecCCCCCCCceeeEEEEEEEeccCCccccceeeecCccceEEecCCCCCceEEEEEEEEecCCCCCCCCC
Q psy12061 506 NPTTVHVTWRYVSPSFEEEPIIGYKVRVWEVDQDMSRANDTIIPVGNTLDADIVDLSPGKRYHMRVLAFSNGGDGRMSSP 585 (626)
Q Consensus 506 ~~~~~~l~W~~~~~~~~~~~i~~Y~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~p~~~Y~~~V~a~~~~G~g~~s~~ 585 (626)
..++++|+|+ .|.....+..||.++.-..++. ..+.+..+..+-+++.||..++.|..+|.|+|..|.+++|+.
T Consensus 451 ~nns~t~~wk--qp~~~~~~~dg~~leld~g~~g----~frevy~g~etmctvdglhfns~y~arvka~n~tg~s~ys~t 524 (699)
T KOG4367|consen 451 HNNSATLSWK--QPPLSTVPADGYILELDDGNGG----QFREVYVGKETMCTVDGLHFNSTYNARVKAFNKTGVSPYSKT 524 (699)
T ss_pred cCCceEEEee--cCCCCCCCCcceEEEeecCCCC----ceeEEEecCceeEEecceecchhHHHHHHHhhccCCCcccce
Confidence 5679999999 5555678899999987554333 334456678889999999999999999999999999999954
Q ss_pred cEEEeecc
Q psy12061 586 AITFQMGE 593 (626)
Q Consensus 586 ~~~~~~~~ 593 (626)
+.+++..
T Consensus 525 -l~lqts~ 531 (699)
T KOG4367|consen 525 -LVLQTSE 531 (699)
T ss_pred -eEeeecc
Confidence 5566553
No 326
>KOG4228|consensus
Probab=97.77 E-value=0.0003 Score=73.42 Aligned_cols=320 Identities=20% Similarity=0.197 Sum_probs=171.9
Q ss_pred eEEEEEEeCCCceEEEEEEEEeCCCCCCCceEEEEEeccceEEEEecCCCCCCcccEEEEEEeecCCCCceEeecceeee
Q psy12061 156 EYECVVKSTVGKISTKTTVIVEGPPGLPGGVQVVEVHKTSATIQWTDGATNGRPITHYKIIARTNWNSTWFNVSEHVIGK 235 (626)
Q Consensus 156 ~Y~C~a~n~~g~~~~~~~l~v~~~P~~p~~~~~~~~~~~~~~l~W~~~~~~~~~~~~y~v~~~~~~~~~w~~~~~~~~~~ 235 (626)
.|+|.+....|.....+.+.|..-|..|....+......+....|..... ....|.+.++..... ........
T Consensus 1 ~Y~~~~~~~~~~~~~~~~v~v~~~p~~~~~~~vt~~~~~~~~~~~~~~~t---~~~~y~v~~~~~~s~-~~~~~~~~--- 73 (1087)
T KOG4228|consen 1 NYTCLARSGLGPGELITYVRVNGGPPGPSTPNVTGSTATSWVQAELLGST---WPNYYQVIFKALSSG-YGYIDVDL--- 73 (1087)
T ss_pred CeeeeecccCCCccceEEEEecCCCCCCCCcccccccccceeehhhccCC---ChhhhheeeeEeccC-cceeeccc---
Confidence 49999999999988889999888777777788878888888888886533 445666666554332 11111110
Q ss_pred eeeccCCceeEEEEeeccCCceEEEEEEEecCCccCCCCCCCCcccCCCCCCCCCCceeEeecCCcCeEEEEEeeCCCCC
Q psy12061 236 EVDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPSPQYNTPADKPYQAPSRIGGGGGKIGDLSISWEPLPREK 315 (626)
Q Consensus 236 ~~~~~~~~~~~~i~~~l~~~~~y~~~v~a~n~~g~~~~s~~~~~~~~~~~~p~~~p~~~~~~~~~~~~v~l~W~~~~~~~ 315 (626)
...... ..+.+-+.+.+ .+.|..|.+..+.+. .-++....+...+..............+.|..+
T Consensus 74 -------~~~~s~-~~~~~~~~~~~--~evnt~~~a~~~~~~-~~rt~~~~~~~~~~~~~~~~~~a~~~~~~~~~~---- 138 (1087)
T KOG4228|consen 74 -------TTRLSY-PCLSPPSFLEL--VEVNTIGRAPFQCPV-APRTGEQATLSLQRDVQALMLSAATAHVNWRRF---- 138 (1087)
T ss_pred -------eeeccc-CCCCCcchhhh--hhccccccccccccc-CCccccccccccccchhhhhhhhhhhccCcccc----
Confidence 001111 11344444444 666666655444432 111211111112222111111112222222210
Q ss_pred cccCcceEEEEEEecCCCcceeeeeeeecceeeEEEEeCCCcceeEEEEEEEEecCCCCCCCCccEEEEccCCCCCCCCC
Q psy12061 316 QNAPNIYYKIFWRKKNDTEFQSETLKEYGNVGIAVVRIPSEFYYTEYEVKVQAINDVGPGPESEVVTIFSAEDMPQVAPQ 395 (626)
Q Consensus 316 ~~~~~~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~p~~~Y~~~v~a~n~~g~~~~s~~~~~~t~~~~p~~~p~ 395 (626)
.. .+.+.+.+..|.++.+......+....|..+.
T Consensus 139 ----------------------------------~~-----------~~~~~~~~~~~~~~~~t~i~i~~~~~~p~~~~- 172 (1087)
T KOG4228|consen 139 ----------------------------------SA-----------TVGPLAIASPGLGPPSTYIQITTNANSPIQPG- 172 (1087)
T ss_pred ----------------------------------cc-----------cccccccCCcccCCCCceEEEeccCCCCCCCC-
Confidence 00 01166667777776666677777777776433
Q ss_pred ceEEEeeecceEEEEeeeccccccccceeeEEEEEEEEecCCCccceEEEEecCccceEEEeCCccCceEEEEEEEeeCC
Q psy12061 396 GVFSRGFNSTAINVTWNPIELIRENIRGRLIGHRIKYWKEDNPEETAVYYLSRTTRNWALIVGLQPDTKYYVKVMAYNNA 475 (626)
Q Consensus 396 ~~~~~~~~~~si~l~W~~~~~~~~~~~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~v~V~a~~~~ 475 (626)
.....+.++++|.++.. ..+..|.+.++..+........ ..........++.|-..|.++..+....
T Consensus 173 ----~~~~~~~it~~w~~~~~------~~~~~ykl~~~~~d~~~~~~v~---~~~~~~~~t~~~~~~~~~~~~~ae~~~~ 239 (1087)
T KOG4228|consen 173 ----EEEEYTTITGSWSPPHA------VSLDTYKLLHLDPDTGYEISVT---LTPPGSGGTGDLGPPSISRFKCAEPDRG 239 (1087)
T ss_pred ----cceEEEEEEecCCCCCc------ccchhhhhhhcCCcccceeeee---ccCCCCCcccCCCCcccccccccCcccc
Confidence 45667899999998764 3367788876555332222111 1222224456777777888888777776
Q ss_pred CCCCCCccEEEeecCCCCCCCCceEEEeeeCCCEEEEEEeecCCCCCCCceeeEEEEEEEeccCCccccceeeecCccce
Q psy12061 476 GEGPESERYLERTYRKAPQKPPSAVHIKGINPTTVHVTWRYVSPSFEEEPIIGYKVRVWEVDQDMSRANDTIIPVGNTLD 555 (626)
Q Consensus 476 g~s~~s~~~~~~t~~~~p~~~p~~l~~~~~~~~~~~l~W~~~~~~~~~~~i~~Y~i~~~~~~~~~~~~~~~~~~~~~~~~ 555 (626)
+.+.....+..++...+ ............+.+..+|. .+..... .....+...
T Consensus 240 ~~~~~~a~i~~r~~~s~---~~~~~~~~~~~~~~~~~t~~--~~~~~~S---------------------~~~v~~~~~- 292 (1087)
T KOG4228|consen 240 PLGSSTAEIEARQLQSV---SKKNFETKHVFKNLVPGTWE--SFSNYAS---------------------TTNVSGRSF- 292 (1087)
T ss_pred ccCCCCcceEEEehhhh---hccccccceeecccCCceee--eeecccc---------------------cCcccCCCc-
Confidence 66655556666655431 11222233334445555565 2211111 011112223
Q ss_pred EEecCCCCCceEEEEEEEEecCCCCCCC
Q psy12061 556 ADIVDLSPGKRYHMRVLAFSNGGDGRMS 583 (626)
Q Consensus 556 ~~l~~L~p~~~Y~~~V~a~~~~G~g~~s 583 (626)
..+.++.|.+.|.+.+.+....|..+.|
T Consensus 293 ~~i~~~~p~~~~~~~it~~~~~~g~~~s 320 (1087)
T KOG4228|consen 293 PLIVNLNPETEYSFVITVRLSSGGAPIS 320 (1087)
T ss_pred ceeccCCCcccccceeeccccCCCeeEE
Confidence 6677888888888888887755554433
No 327
>cd05771 IgC_Tapasin_R Tapasin-R immunoglobulin-like domain. IgC_Tapasin_R: Immunoglobulin-like domain on Tapasin-R. Tapasin is a V-C1 (variable-constant) immunoglobulin superfamily molecule present in the endoplasmic reticulum (ER), where it links MHC class I molecules to the transporter associated with antigen processing (TAP). Tapasin-R is a tapasin-related protein that contains similar structural motifs to Tapasin, with some marked differences, especially in the V domain, transmembrane and cytoplasmic regions. The majority of Tapasin-R is located within the ER; however, there may be some expression of Tapasin-R at the cell surface. Tapasin-R lacks an obvious ER retention signal.
Probab=97.76 E-value=0.0007 Score=55.33 Aligned_cols=40 Identities=23% Similarity=0.421 Sum_probs=36.2
Q ss_pred eEEEeecCCCCCEeEEEEEEeCCCceEEEEEEEEeCCCCC
Q psy12061 143 LLEITNASFADAGEYECVVKSTVGKISTKTTVIVEGPPGL 182 (626)
Q Consensus 143 ~l~i~~~~~~d~g~Y~C~a~n~~g~~~~~~~l~v~~~P~~ 182 (626)
+|.|.+++..|+|.|+|.+.+..|..+..+.|.|..+|..
T Consensus 2 sL~i~~v~~~D~G~Y~C~~~~~~~~~~~~~~l~v~~~P~v 41 (139)
T cd05771 2 SLTLPGLTVHDEGTYICSVSTPPHQAQQIIQLSVSEPPRV 41 (139)
T ss_pred eEEECCCCHHHCEEEEEEEEccCcceeeEEEEEEecCCce
Confidence 6899999999999999999998899999999999887753
No 328
>cd07706 IgV_TCR_delta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) delta chain. IgV_TCR_delta: immunoglobulin (Ig) variable (V) domain of the delta chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is
Probab=97.76 E-value=6.7e-05 Score=59.08 Aligned_cols=77 Identities=14% Similarity=0.311 Sum_probs=50.8
Q ss_pred eCCCceEEecCCcEEEEEEecccCCcceeEEEeeC--CEEec----c-ccCCccCCCeeEec------CCeEEEeecCCC
Q psy12061 86 QLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHN--GVRIG----N-MDLNELETPNINID------GGLLEITNASFA 152 (626)
Q Consensus 86 ~~~~~~~v~~g~~~~l~C~~~~~p~p~~~i~W~~~--~~~~~----~-~~~~~~~~~~~~~~------~~~l~i~~~~~~ 152 (626)
+.|..+.+.+|++++|.|...... ....+.|+|- +..+. . .........|+.+. ...|.|.+++.+
T Consensus 4 q~~~~v~~~~G~~v~L~C~~~~~~-~~~~v~Wyrq~~~~~~~~l~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~~~~~ 82 (116)
T cd07706 4 QAQPDVSVQVGEEVTLNCRYETSW-TNYYIFWYKQLPSGEMTFLIRQKSIYGNATKGRYSVNFQKAQKSISLTISALQLE 82 (116)
T ss_pred EeCCceEEcCCCCEEEEEEEeCCC-CceEEEEEEECCCCceEEEEEecCccCCccCCeEEEEEeccCCEEEEEECCCCHH
Confidence 457788999999999999987643 2246789973 22111 0 00001112444432 247999999999
Q ss_pred CCEeEEEEEEe
Q psy12061 153 DAGEYECVVKS 163 (626)
Q Consensus 153 d~g~Y~C~a~n 163 (626)
|+|.|.|.+..
T Consensus 83 Dsg~Y~C~~~~ 93 (116)
T cd07706 83 DSAKYFCALST 93 (116)
T ss_pred HCEEEEEEEEC
Confidence 99999999875
No 329
>cd07691 Ig_CD3_gamma_delta Immunoglobulin (Ig)-like domain of CD3 gamma and delta chains. Ig_CD3_gamma_delta; immunoglobulin (Ig)-like domain of CD3 gamma and delta chains. CD3 is a T cell surface receptor that is associated with alpha/beta T cell receptors (TCRs). The CD3 complex consists of one gamma, one delta, two epsilon, and two zeta chains. The CD3 subunits form heterodimers as gamma/epsilon, delta/epsilon, and zeta/zeta. The gamma, delta, and epsilon chains each contain an extracellular Ig domain, whereas the extracellular domains of the zeta chains are very small and have unknown structure. The CD3 domain participates in intracellular signalling once the TCR has bound an MHC/antigen complex.
Probab=97.74 E-value=0.0001 Score=48.96 Aligned_cols=59 Identities=31% Similarity=0.470 Sum_probs=42.8
Q ss_pred ceEEEEeeeCCCCCCeeEEEeCCEEccCCCcEEEccCCcEEEccCCCCCCEEEEEEEEcCCCCceeeEEEEEEe
Q psy12061 6 GNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTATNVHGMDESKGRLIVLH 79 (626)
Q Consensus 6 ~~~~l~C~~~g~p~p~i~W~~~~~~i~~~~~~~~~~~g~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~ 79 (626)
+.|.|+|.+. -+|.|+| |..+.... +.+|.+-++..+-.|.|+|.+++ ......|.|++
T Consensus 7 ~~V~L~C~~~----tsi~W~k-G~~~~~~~------~~tlnLGs~~~DPRG~Y~C~~s~----~~~~~~LQVyY 65 (69)
T cd07691 7 GKVFLKCNGA----TNITWKK-GKEILEVS------NTLLDLGSRINDPRGTYSCKESE----PNKEKTLQVYY 65 (69)
T ss_pred ceEEEEecCC----CcEEEec-Cccccccc------ccEEeccCcccCCCcceEecCcc----CCCcEEEEEEE
Confidence 5799999762 4699999 65553221 45688888999999999999977 23455666643
No 330
>cd07698 IgC_MHC_I_alpha3 Class I major histocompatibility complex (MHC) alpha chain immunoglobulin domain. IgC_MHC_I_alpha3; Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class I alpha chain. Class I MHC proteins bind antigenic peptide fragments and present them to CD8+ T lymphocytes. Class I molecules consist of a transmembrane alpha chain and a small chain called the beta2 microglobulin. The alpha chain contains three extracellular domains, two of which fold together to form the peptide-binding cleft (alpha1 and alpha2), and one which has an Ig fold (alpha3). Peptide binding to class I molecules occurs in the endoplasmic reticulum (ER) and involves both chaperones and dedicated factors to assist in peptide loading. Class I MHC molecules are expressed on most nucleated cells.
Probab=97.71 E-value=0.00016 Score=54.04 Aligned_cols=66 Identities=20% Similarity=0.260 Sum_probs=42.0
Q ss_pred CCcEEEEEEecccCCcceeEEEeeCCEEeccccCCccCCCeeE-ecCCeEE---EeecCCCCCEeEEEEEEeCC
Q psy12061 96 HRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNIN-IDGGLLE---ITNASFADAGEYECVVKSTV 165 (626)
Q Consensus 96 g~~~~l~C~~~~~p~p~~~i~W~~~~~~~~~~~~~~~~~~~~~-~~~~~l~---i~~~~~~d~g~Y~C~a~n~~ 165 (626)
|+.++|.|.+.|-.++.++++|.++|..+..... ..... ..++.++ ...+...+...|+|.+....
T Consensus 14 ~~~~~L~C~a~gF~P~~i~v~W~~~g~~~~~~~~----~~~~~~~~d~ty~~~s~l~v~~~~~~~ytC~V~H~~ 83 (93)
T cd07698 14 DGSLTLSCHATGFYPRDIEVTWLRDGEDSVDDVE----SGEILPNGDGTYQLWVTLEVPPEDKARYSCRVEHSG 83 (93)
T ss_pred CCcEEEEEEEEEEeCCCcEEEEEECCEECccccc----ccceEECCCCeEEEEEEEEECCCCCCEEEEEEEeCC
Confidence 7889999999996656789999999964332210 01111 1222222 23444568889999997654
No 331
>cd05889 Ig1_DNAM-1_like First immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226) and similar proteins. Ig1_DNAM-1_like: domain similar to the first immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226). DNAM-1 is a transmembrane protein having two Ig-like domains. It is an adhesion molecule which plays a part in tumor-directed cytotoxicity and adhesion in natural killer (NK) cells and T lymphocytes. It has been shown to regulate the NK cell killing of several tumor types, including myeloma cells and ovarian carcinoma cells. DNAM-1 interacts specifically with poliovirus receptor (PVR; CD155) and nectin -2 (CD211), other members of the Ig superfamily. DNAM-1 is expressed in most peripheral T cells, NK cells, monocytes and a subset of B lymphocytes.
Probab=97.70 E-value=0.00038 Score=51.77 Aligned_cols=78 Identities=18% Similarity=0.322 Sum_probs=49.9
Q ss_pred CcEEEEEEecccCCcceeEEEeeCCE----Eeccc----c--CCccCCCeeEe-----cCCeEEEeecCCCCCEeEEEEE
Q psy12061 97 RNLQLRCSAHTEELLDVAYIWTHNGV----RIGNM----D--LNELETPNINI-----DGGLLEITNASFADAGEYECVV 161 (626)
Q Consensus 97 ~~~~l~C~~~~~p~p~~~i~W~~~~~----~~~~~----~--~~~~~~~~~~~-----~~~~l~i~~~~~~d~g~Y~C~a 161 (626)
++++|.|...... ....++|.|-.. .+..- + +...-..|+.. .+.+|.|.+++.+|+|.|+|..
T Consensus 1 ~~vtL~C~~~~~~-~~~qV~W~k~~~~~~~~iavy~~~~g~~~~~~y~~Rv~f~~~~~~d~sI~i~nvt~~D~G~Y~C~~ 79 (96)
T cd05889 1 EKMKLECVYPKTG-VLIQVSWTKHNGSHKENIAVYHPIYGMHIEDKYRGRVYFLNSTREDMSLSFNNATEEDVGLYCCSL 79 (96)
T ss_pred CCEEEEeEcCCCC-cEEEEEEEEcCCCCCceEEEEECCCCCEECccccCeEEEecCCCCccEEEEcCCCcccCEEEEEEE
Confidence 4689999986533 345788987421 11110 0 00011234443 3579999999999999999999
Q ss_pred Ee-CCCceEEEEEEE
Q psy12061 162 KS-TVGKISTKTTVI 175 (626)
Q Consensus 162 ~n-~~g~~~~~~~l~ 175 (626)
.. ..|..++.+.+.
T Consensus 80 ~t~P~g~~~~~i~~~ 94 (96)
T cd05889 80 VTYPQGSWEKVIEVV 94 (96)
T ss_pred EeCCCCCeEEEEEEE
Confidence 76 477777766653
No 332
>KOG3632|consensus
Probab=97.69 E-value=0.00043 Score=70.56 Aligned_cols=262 Identities=14% Similarity=0.063 Sum_probs=151.3
Q ss_pred CCCceEEEEEeccceEEEEecCCCCC--CcccEEEEEEeecCCCCceEeecceeeeeeeccCCc-eeEEEEeeccCCceE
Q psy12061 182 LPGGVQVVEVHKTSATIQWTDGATNG--RPITHYKIIARTNWNSTWFNVSEHVIGKEVDRYTGR-KEASIENVLVPWSTY 258 (626)
Q Consensus 182 ~p~~~~~~~~~~~~~~l~W~~~~~~~--~~~~~y~v~~~~~~~~~w~~~~~~~~~~~~~~~~~~-~~~~i~~~l~~~~~y 258 (626)
-|..+.++.....++.+-|++|.... .++-.|.+.....-... .+.+. +...+.+--..+..|
T Consensus 580 ypr~~~~vkqla~sv~vawepps~pP~~~~~~~~~~~v~~elrq~--------------l~~gs~tka~~E~ld~~a~s~ 645 (1335)
T KOG3632|consen 580 YPRTGAAVKQLAGSVHVAWEPPSSPPFTAPARMIGATVLMELRQT--------------LYAGSLTKAMQESLDNSAHSG 645 (1335)
T ss_pred cccchhhhhhhccceeeeccCCCCCCccccceeeeeecchhhhhh--------------cccccchHHHHhhccccCCce
Confidence 45566677788899999999875322 34444443221110000 00111 111122212345667
Q ss_pred EEEEEEecCCccCCCCCCCCcccCCCCCCCCCCceeEeecCCcCeEEEEEeeCCCCCcccCcceEEEEEEecCCCcceee
Q psy12061 259 EFKVIAGNELGYGEPSSPSPQYNTPADKPYQAPSRIGGGGGKIGDLSISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSE 338 (626)
Q Consensus 259 ~~~v~a~n~~g~~~~s~~~~~~~~~~~~p~~~p~~~~~~~~~~~~v~l~W~~~~~~~~~~~~~~y~i~~~~~~~~~~~~~ 338 (626)
.+.|.+....|.+...... ..+.... ...|.++++...+..+..++|-+..... -++.|.... +..
T Consensus 646 ~isvq~ltSrGsqd~lrc~--Llvgg~a-~vvpsqlrv~n~tqtSa~itwvp~nsn~-------~Hviyln~e--E~~-- 711 (1335)
T KOG3632|consen 646 YISVQRLTSRGSQDQLRCI--LLVGGAA-PVVPSQLRVWNATQTSAMITWVPFNSNF-------LHVIYLNAE--EPR-- 711 (1335)
T ss_pred eeehhhhhccCCCCcceee--Eeccccc-cccchhhhhhhhhchhhheeeeecCCCc-------ceeeecCCc--cCC--
Confidence 7777777777766555442 2222233 3788899999999999999999833221 133343222 111
Q ss_pred eeeeecceeeEEEEeCCCcceeEEEEEEEEecC-CC--------CCCCCccEEEEccCCCCCCCCCceEEEe-eecceEE
Q psy12061 339 TLKEYGNVGIAVVRIPSEFYYTEYEVKVQAIND-VG--------PGPESEVVTIFSAEDMPQVAPQGVFSRG-FNSTAIN 408 (626)
Q Consensus 339 ~~~~~~~~~~~~~~~~~L~p~~~Y~~~v~a~n~-~g--------~~~~s~~~~~~t~~~~p~~~p~~~~~~~-~~~~si~ 408 (626)
+.....+.+++.+|.|++.|..+|.+.-. .+ .+.....+.+.|...-|+.+|..+.+.. .+++.+.
T Consensus 712 ----ps~a~~y~ytf~~lrpgt~y~a~vea~~p~q~pwdl~~v~~etr~atv~f~tLpAGppappldV~vE~g~spg~l~ 787 (1335)
T KOG3632|consen 712 ----PSVAEMYNYTFMRLRPGTDYWASVEAALPRQEPWDLRMVPMETRQATVLFRTLPAGPPAPPLDVKVETGGSPGRLE 787 (1335)
T ss_pred ----CchhhhhHHHHhccCCCCccceecccccCcCCCcccccchhhhhccceeeecccCCCCCCchheeeecCCCCceee
Confidence 11112334668899999999999988754 11 2233566778888888888999998875 4677899
Q ss_pred EEeeecccc--ccccceeeEEEEEEEEecCCCccceEEEEecCccceEEEeCCcc-CceEEEEEEEeeCCCCCC
Q psy12061 409 VTWNPIELI--RENIRGRLIGHRIKYWKEDNPEETAVYYLSRTTRNWALIVGLQP-DTKYYVKVMAYNNAGEGP 479 (626)
Q Consensus 409 l~W~~~~~~--~~~~~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p-~t~Y~v~V~a~~~~g~s~ 479 (626)
++|.++..+ +....-.+++|.|+... .............+...+..|+- ...-.|.|+....-|++-
T Consensus 788 vswrPptldsag~sngv~vtgYavyadg----qkv~Evafptagst~VelsQlq~~l~~~~V~vRtms~~gesv 857 (1335)
T KOG3632|consen 788 VSWRPPTLDSAGCSNGVAVTGYAVYADG----QKVEEVAFPTAGSTKVELSQLQDGLYHGAVGVRTMSVPGESV 857 (1335)
T ss_pred eeccCceeccccccCceeeeeeeeeeCC----ceeeeeecccCCceEEEeeeehhhheecceeEEecccCcccc
Confidence 999988643 22334568899997631 11111111112222244455554 334467777777777653
No 333
>KOG0613|consensus
Probab=97.69 E-value=0.002 Score=68.59 Aligned_cols=361 Identities=17% Similarity=0.127 Sum_probs=182.4
Q ss_pred eEEecCCcEEEEEEecccCCcceeEEEeeCCEEecccc-CCcc--CCCeeEecCCeEEEeecCCCCCEeEEEEEEeCCCc
Q psy12061 91 ITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMD-LNEL--ETPNINIDGGLLEITNASFADAGEYECVVKSTVGK 167 (626)
Q Consensus 91 ~~v~~g~~~~l~C~~~~~p~p~~~i~W~~~~~~~~~~~-~~~~--~~~~~~~~~~~l~i~~~~~~d~g~Y~C~a~n~~g~ 167 (626)
..+.+|.+..|.-.+.+.|.+.. .|-.++..+..-. ...+ .........+.+-+..-...+.+.|.....+..+
T Consensus 50 ~~~~e~~~a~~~~rv~~~~r~~~--~~~s~~~~~~~~~pa~~~~~~~~~~~~l~~t~~v~~~~ad~~~~~~~e~~~~i~- 126 (1205)
T KOG0613|consen 50 LQVKEGETALLTGRVDGEPRPEL--IWGSSGIEIDMMVPATEYSLVTHMNTELGSTWAVGDEYADDRPIHLVERKALID- 126 (1205)
T ss_pred eeccCCcceeeeeeeccccccCC--CCcccccchhhcccccccccccccccccccccccccccccccccccccccccCC-
Confidence 44556666666666677665543 4555444432110 0000 0001111122333333333444444443334444
Q ss_pred eEEEEEEEE-eCCCCCCCceEEEEEeccceEEEEecCC-CCCCcccEEEEEEeecCCCCceEeecceeeeeeeccCCcee
Q psy12061 168 ISTKTTVIV-EGPPGLPGGVQVVEVHKTSATIQWTDGA-TNGRPITHYKIIARTNWNSTWFNVSEHVIGKEVDRYTGRKE 245 (626)
Q Consensus 168 ~~~~~~l~v-~~~P~~p~~~~~~~~~~~~~~l~W~~~~-~~~~~~~~y~v~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~ 245 (626)
......+.- ..++.+|.+-....+....+...|..+. +++.....|.|+.+..+...|......... .
T Consensus 127 ~~~~~~v~~~e~pd~~~~~~~sv~~~~~~v~~~~~~~~~d~~~k~~~~iie~~~~g~s~~~~~l~~~~~----------~ 196 (1205)
T KOG0613|consen 127 VVPSPEVCQQEKPDPPPSNRESVLVHRARVLPAWRPPREDGGRKREEYIIERRQAGRSPWLKRLTQPTD----------D 196 (1205)
T ss_pred ccccchhhhhcCCCCCCCCccceeecCceecccccCCccCccceeecceEEEEeccCCCcccccccccC----------C
Confidence 333333332 3344455555555667777888898765 455778899999999888888664332111 1
Q ss_pred EEEEeeccCCceEEEEEEEecCCccCCCCCCCCcccCCCCCCCCCCceeEeecCCcCeEEEEEeeCCCCCcccCcceEEE
Q psy12061 246 ASIENVLVPWSTYEFKVIAGNELGYGEPSSPSPQYNTPADKPYQAPSRIGGGGGKIGDLSISWEPLPREKQNAPNIYYKI 325 (626)
Q Consensus 246 ~~i~~~l~~~~~y~~~v~a~n~~g~~~~s~~~~~~~~~~~~p~~~p~~~~~~~~~~~~v~l~W~~~~~~~~~~~~~~y~i 325 (626)
..+.. .. |.++++++-..|...+.... ........+...|........+...+.+.|... .......+.+|.+
T Consensus 197 s~~~~-a~----~e~~v~~v~s~gqp~~~~~~-~~~g~~i~~~~~~~~s~t~e~s~~~i~~~l~~~-~G~~~~~~~~~l~ 269 (1205)
T KOG0613|consen 197 STDTD-AH----YESRVRAVVSAGQPEPLERW-EILGELIAPGSAPSMSVTLEASDRKIQLTLRAP-RGPYSAHILGYLI 269 (1205)
T ss_pred cceec-cc----cceeEEEEEecCCCccchhh-hhcccccCCCCccccccccchhheeeeEEeecC-CCchHHHHhcchh
Confidence 11111 22 44444444444433322221 111111222233333333344556677777763 2233344556666
Q ss_pred EEEe-cCCCcceeeeeeeecceeeEEEEeCCCcceeEEEEEEEEecCCCCCCCCc---cEEEEccCCCCCCCCCceEEEe
Q psy12061 326 FWRK-KNDTEFQSETLKEYGNVGIAVVRIPSEFYYTEYEVKVQAINDVGPGPESE---VVTIFSAEDMPQVAPQGVFSRG 401 (626)
Q Consensus 326 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~L~p~~~Y~~~v~a~n~~g~~~~s~---~~~~~t~~~~p~~~p~~~~~~~ 401 (626)
+... .+...|........ .....+...-.++..|.+++...-..|.+.+-. ...+.....+|...+.+.++..
T Consensus 270 e~~~~~~~~t~~i~~~~~~---~~~s~t~~~~~~~~q~~~~v~~~~~i~~~~~~p~~~~~aaa~~~~~~v~~~~~~~v~a 346 (1205)
T KOG0613|consen 270 EQRKHKGGNTKTIQNDGPE---PELSWTVADKRQGCQDRFKVTEEAPIGKGKPGPESLQAAAARPPEVPVGLVRNLSVTA 346 (1205)
T ss_pred hhcccCCCccccccccCCc---cccceeeecccCCcccceeeeEEeeccccccCchhhhhhccCCccccccccccceecc
Confidence 5554 33444443322211 112222333346778888888887777654433 3333444455666677777888
Q ss_pred eecceEEEEeeeccccccccceeeEEEEEEEEecCCCccceEEEEecCccceEEEeCCccCceEEEEEEEeeCCCCC
Q psy12061 402 FNSTAINVTWNPIELIRENIRGRLIGHRIKYWKEDNPEETAVYYLSRTTRNWALIVGLQPDTKYYVKVMAYNNAGEG 478 (626)
Q Consensus 402 ~~~~si~l~W~~~~~~~~~~~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~v~V~a~~~~g~s 478 (626)
...+.+.+.|........ ....+|...-........ ............+.+.++-++..|..++.|.|..|..
T Consensus 347 ~d~~~v~m~~~~~~~~~p---~~~~~~~~~~~~~~~~~~-~~~~~~~~ts~~~~~~~~~~~e~~~~~~~a~n~~g~~ 419 (1205)
T KOG0613|consen 347 RDNTLVEMPTALSGTQKP---DEAQGYHGEEVSSESLGA-LPCPVGTVTSHTYTIKDAGPGEGYFTRVPAVNKGGTE 419 (1205)
T ss_pred ccCcceeecccccCCcCC---chheeecccccccccccc-cccccccccCcchhhhhcCcccccccccceeccCCcc
Confidence 888899999975432211 113444443222221111 1222223344557888999999999999999988864
No 334
>COG3401 Fibronectin type 3 domain-containing protein [General function prediction only]
Probab=97.69 E-value=0.0026 Score=57.35 Aligned_cols=220 Identities=12% Similarity=-0.011 Sum_probs=119.5
Q ss_pred eeEEEEeCCCcceeEEEEEEEEecCCCCCCCCccEEEEccCCCCCCCCCceEEEeeecceEEEEeeeccccccccceeeE
Q psy12061 347 GIAVVRIPSEFYYTEYEVKVQAINDVGPGPESEVVTIFSAEDMPQVAPQGVFSRGFNSTAINVTWNPIELIRENIRGRLI 426 (626)
Q Consensus 347 ~~~~~~~~~L~p~~~Y~~~v~a~n~~g~~~~s~~~~~~t~~~~p~~~p~~~~~~~~~~~si~l~W~~~~~~~~~~~~~i~ 426 (626)
....+....|.+...|.+..-..+..-.+..+......+..-. +...+......+..+.+-|.+..+.. +.
T Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~i~---~~~~~~~~~~~~~~~~~~w~~~~d~~------~~ 99 (343)
T COG3401 29 YQTHYYDEGLEGEESYPYQEGTTKVDKISYDSERILVKTSFIE---RVRSVFASLERPKSVKVFWSPHPDVS------VG 99 (343)
T ss_pred hhhhhhhccccccCcceeeecccccceeeecCcceEEEeeecc---ccccccchhcCcceeeecccccCCCC------CC
Confidence 3444556778888888877766655544444555555554111 11122233344567999999876543 55
Q ss_pred EEEEEEEecCCCccceEEEEecCccceEEEeCCccCceEEEEEEEeeCCCCCCCCccEEEeecCCCCCCCCceEEEeeeC
Q psy12061 427 GHRIKYWKEDNPEETAVYYLSRTTRNWALIVGLQPDTKYYVKVMAYNNAGEGPESERYLERTYRKAPQKPPSAVHIKGIN 506 (626)
Q Consensus 427 ~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~v~V~a~~~~g~s~~s~~~~~~t~~~~p~~~p~~l~~~~~~ 506 (626)
.|.|+....+.. ..........-...+.-.+|.++..|...|.|.+..+.=..+....--+....|+ .-.++++....
T Consensus 100 ~Y~i~~~~gD~~-f~r~~~~~n~l~~~~i~s~~~~~~~~~~~Iia~~f~~~~sfsf~gVE~~~~~~P~-ei~~~~~~~d~ 177 (343)
T COG3401 100 KYIIQRQNGDGK-FLRTGLVKNRLFVEFIDSDLGHNEKYMELIIAADFQMGKSFSFTGVEATPKAEPK-EITNVRVSFDL 177 (343)
T ss_pred eEEEEEecCchh-hhhhhHHHhccchhheecccccccceeeeEEeecccccceeeeeeeecccccCCc-eeeeeeeecCC
Confidence 799987554443 2111111122222355668999999999999988766533332111112222222 22344455557
Q ss_pred CCEEEEEEeecCCCCCCCceeeEEEEEEEeccCCccccceeeecCccceEEecCCCCCceEEEEEEEEecCC-CCCCCCC
Q psy12061 507 PTTVHVTWRYVSPSFEEEPIIGYKVRVWEVDQDMSRANDTIIPVGNTLDADIVDLSPGKRYHMRVLAFSNGG-DGRMSSP 585 (626)
Q Consensus 507 ~~~~~l~W~~~~~~~~~~~i~~Y~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~p~~~Y~~~V~a~~~~G-~g~~s~~ 585 (626)
.+.+.|+|+. +...+ .|.|+ ....++. ..........+.+...--..|..|.+.|.+....| ++..+.+
T Consensus 178 ~~~i~ls~dg--~~~~~----yy~IY-~~~~g~e---~~~~ia~t~~n~y~d~~eglga~~~y~VTtVd~~~~es~lp~~ 247 (343)
T COG3401 178 GNNIELSEDG--SEAED----YYRIY-ASDSGNE---EYGFIAQTTENSYYDVKEGLGAVEYYKVTTVDNTGFESDLPNE 247 (343)
T ss_pred CCcceeeccC--ccccc----eEEEe-ccCCccc---cccceeeccccchhhhhhccCceeEEEEEEEcCCcceeccCCc
Confidence 7889999994 22222 78883 4333331 11222222333333322233778888899988554 6666654
Q ss_pred cE
Q psy12061 586 AI 587 (626)
Q Consensus 586 ~~ 587 (626)
..
T Consensus 248 ~t 249 (343)
T COG3401 248 PT 249 (343)
T ss_pred cc
Confidence 33
No 335
>cd05884 Ig2_Necl-3 Second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Ig2_Necl-3: second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-3 has been shown to accumulate in tissues of the central and peripheral nervous system, where it is expressed in ependymal cells and myelinated axons. It is observed at the interface between the axon shaft and the myelin sheath. Ig domains are likely to participate in ligand binding and recognition.
Probab=97.67 E-value=0.00023 Score=51.55 Aligned_cols=68 Identities=15% Similarity=0.169 Sum_probs=43.0
Q ss_pred EEEEEEecccCCcceeEEEeeCCEEeccccCCcc--CCCeeEecCCeEEEeecCCCCCEeEEEEEEeCCCc
Q psy12061 99 LQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNEL--ETPNINIDGGLLEITNASFADAGEYECVVKSTVGK 167 (626)
Q Consensus 99 ~~l~C~~~~~p~p~~~i~W~~~~~~~~~~~~~~~--~~~~~~~~~~~l~i~~~~~~d~g~Y~C~a~n~~g~ 167 (626)
++|.|.+.+..++ +.|+|+|||..+........ +....-...+.|.|..-...+...|+|.+.+..-.
T Consensus 2 ~~LtC~a~gf~P~-~~itW~kng~~l~~~~~~~~~~~~~~t~~~~s~L~~~~~~~d~g~~ytC~v~h~~l~ 71 (83)
T cd05884 2 MQLTCKTSGSKPA-ADIRWFKNDKEIKDVKYLKEEDANRKTFTVSSTLDFRVDRSDDGVAIICRVDHESLN 71 (83)
T ss_pred EEEEEEeCCccCC-CEEEEEECCEECcCceeeEeeCCCCCEEEEEEEEEEEcccccCCCEEEEEEechhcC
Confidence 6899999995544 78999999999864321000 00111112345666655556677999999876543
No 336
>cd05766 IgC_MHC_II_beta Class II major histocompatibility complex (MHC) beta chain immunoglobulin domain. IgC_MHC_II_beta: Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class II beta chain. MHC class II molecules play a key role in the initiation of the antigen-specific immune reponse. In both humans and in mice these molecules have been shown to be expressed constitutively on the cell surface of professional antigen-presenting cells (APCs), for example on B-lymphocytes, monocytes, and macrophages. The expression of these molecules has been shown to be induced in nonprofessional APCs such as keratinocyctes, and they are expressed on the surface of activated human T cells and on T cells from other species. The MHC II molecules present antigenic peptides to CD4(+) T-lymphocytes. These peptides derive mostly from protelytic processing via the endocytic pathway, of antigens internalized by the APC. These peptides bind to the MHC class II molecules in the endosome be
Probab=97.66 E-value=0.00028 Score=52.56 Aligned_cols=61 Identities=15% Similarity=0.211 Sum_probs=41.7
Q ss_pred CCCceEEEEeeeCCC-CCC-eeEEEeCCEEccCC---CcEEEccCCc------EEEccCCCCCCEEEEEEEEcCC
Q psy12061 3 GEGGNVTIFCNPEAA-PKP-KFVWKKDGNIIGSG---GRRKIFENGN------LLISPVSRDDSGIYSCTATNVH 66 (626)
Q Consensus 3 ~~G~~~~l~C~~~g~-p~p-~i~W~~~~~~i~~~---~~~~~~~~g~------L~i~~v~~~d~G~Y~C~a~n~~ 66 (626)
.+|+.++|.|.+.|. |.. +++|+|||..+..+ ....--.+|+ |.+. .++...|+|.+....
T Consensus 12 ~~~~~~~L~C~~~gFyP~~i~v~W~~~g~~~~~~~~~~~~~~~~dgTy~~~s~L~~~---~~~~~~ysC~V~H~~ 83 (94)
T cd05766 12 SLSHPHLLVCHVWGFYPPEITVKWFKNGQEETEGVVSTELIPNGDWTYQILVMLETT---PSRGDTYTCVVEHSS 83 (94)
T ss_pred cCCCCeEEEEEEeeecCCCCEEEEEECCeecCCCceecceEECCCCcEEEEEEEEEc---CCCCCEEEEEEEeCC
Confidence 468999999999995 665 89999999998653 1111122332 4433 346668999998653
No 337
>cd04984 IgV_L_lambda Immunoglobulin (Ig) lambda light chain variable (V) domain. IgV_L_lambda: Immunoglobulin (Ig) light chain, lambda type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.
Probab=97.64 E-value=0.00011 Score=55.78 Aligned_cols=73 Identities=15% Similarity=0.252 Sum_probs=44.8
Q ss_pred EEecCCcEEEEEEecccCCcceeEEEeeC--CEEecc----c-cCCccCCCeeEe----cCCeEEEeecCCCCCEeEEEE
Q psy12061 92 TIAAHRNLQLRCSAHTEELLDVAYIWTHN--GVRIGN----M-DLNELETPNINI----DGGLLEITNASFADAGEYECV 160 (626)
Q Consensus 92 ~v~~g~~~~l~C~~~~~p~p~~~i~W~~~--~~~~~~----~-~~~~~~~~~~~~----~~~~l~i~~~~~~d~g~Y~C~ 160 (626)
.+.+|++++|.|.+.........+.|++. |..... . ........++.. ....|+|.+++.+|+|.|.|.
T Consensus 2 ~v~~G~~v~l~C~~~~~~~~~~~i~Wy~q~~g~~~~~l~~~~~~~~~~~~~rf~~~~~~~~~~L~I~~~~~~Dsg~Y~C~ 81 (98)
T cd04984 2 SVSPGETVTITCTGSSGNISGNYVNWYQQKPGSAPRYLIYEDSDRPSGIPDRFSGSKSGNTASLTISGAQTEDEADYYCQ 81 (98)
T ss_pred ccCCCCCEEEEEEEcCCCcCCCCEEEEEECCCCCccEEEEeccccCCCCCCCEEEEccCCEEEEEECCCChhhCEEEEEE
Confidence 57899999999998775211224689863 222110 0 000001123332 234699999999999999998
Q ss_pred EEeC
Q psy12061 161 VKST 164 (626)
Q Consensus 161 a~n~ 164 (626)
+.+.
T Consensus 82 ~~~~ 85 (98)
T cd04984 82 VWDS 85 (98)
T ss_pred EccC
Confidence 8653
No 338
>cd05712 Ig_Siglec_N Immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins). Ig_Siglec_N: immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins). Siglec refers to a structurally related protein family that specifically recognizes sialic acid in oligosaccharide chains of glycoproteins and glycolipids. Siglecs are type I transmembrane proteins, organized as an extracellular module composed of Ig-like domains (an N-terminal variable set of Ig-like carbohydrate recognition domains, and 1 to 16 constant Ig-like domains), followed by transmembrane and short cytoplasmic domains. Human siglecs are classified into two subgroups, one subgroup is comprised of sialoadhesin (Siglec-1), CD22 (Siglec-2), and MAG, the other subgroup is comprised of CD33-related Siglecs which include CD33 (Siglec-3) and human Siglecs 5-11.
Probab=97.62 E-value=0.0004 Score=54.82 Aligned_cols=79 Identities=19% Similarity=0.253 Sum_probs=50.3
Q ss_pred eCCCceEEecCCcEEEEEEecccC----CcceeEEEeeCCE-----E-ec-ccc---CCccCCCeeEe------cCCeEE
Q psy12061 86 QLPPKITIAAHRNLQLRCSAHTEE----LLDVAYIWTHNGV-----R-IG-NMD---LNELETPNINI------DGGLLE 145 (626)
Q Consensus 86 ~~~~~~~v~~g~~~~l~C~~~~~p----~p~~~i~W~~~~~-----~-~~-~~~---~~~~~~~~~~~------~~~~l~ 145 (626)
+.|+.+.+.+|++++|.|...... .....+.|++... . +. ... ....-..|+.. .+..|+
T Consensus 4 q~P~~v~~~~G~~VtL~C~f~~~~~~~~~~~~~~~Wykq~~g~~~~~~~~~~~~~~~~~~~f~gR~~~~~~~~~~~~sL~ 83 (119)
T cd05712 4 WMPKSVSVQEGLCVLIPCSFSYPADWPVSNGVHGIWYKGHPYPKNRPPVATNNRSRLVHESTRGRFRLLGDLGKKNCSLL 83 (119)
T ss_pred cCCCEEEEeccccEEEEEEeeCcccccCCCceEEEEEeCCCCCCCCCcEEEcCCCccccccccccEEEecCCCCCEEEEE
Confidence 357788999999999999875332 1134578997421 1 11 010 00011234433 224799
Q ss_pred EeecCCCCCEeEEEEEEeC
Q psy12061 146 ITNASFADAGEYECVVKST 164 (626)
Q Consensus 146 i~~~~~~d~g~Y~C~a~n~ 164 (626)
|.+++.+|+|.|.|.+...
T Consensus 84 I~~l~~~Dsg~Y~C~~~~~ 102 (119)
T cd05712 84 ISDAQPEDSGKYFFRVELG 102 (119)
T ss_pred EccCChhhCeEEEEEEEcC
Confidence 9999999999999988654
No 339
>cd07699 IgC_L Immunoglobulin Constant domain. IgC_L: Immunoglobulin (Ig) light chain constant (C) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.
Probab=97.61 E-value=0.00014 Score=55.05 Aligned_cols=82 Identities=15% Similarity=0.176 Sum_probs=49.5
Q ss_pred CceeeeCCCceEEecCCcEEEEEEecccCCcceeEEEeeCCEEeccccCCccCCCeeEecCC------eEEEeecCCCCC
Q psy12061 81 PSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGG------LLEITNASFADA 154 (626)
Q Consensus 81 p~~~~~~~~~~~v~~g~~~~l~C~~~~~p~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~------~l~i~~~~~~d~ 154 (626)
|.....+|.......++.++|.|.+.+--+..+++.|++||+.+...... .......++ .|.+..-.-.+.
T Consensus 2 P~V~v~~p~~~~~~~~~~~~L~C~~~gfyP~~i~v~W~~~g~~~~~~~~~---~~~~~~~dgty~~~s~L~v~~~~w~~~ 78 (100)
T cd07699 2 PSVTIFPPSSEELEKSGKATLVCLINDFYPGFATVQWKVDGATVSSGVQT---STTEQQSDNTYSLSSYLTLTKSDWNKH 78 (100)
T ss_pred CeEEEECCCHHHHccCCCcEEEEEEEeEECCCCEEEEEECCEECcccEec---cccEECCCCCEEEEEEEEEcHHHhCCC
Confidence 33333445444555678899999999965557899999999998533110 011111133 333333332346
Q ss_pred EeEEEEEEeCC
Q psy12061 155 GEYECVVKSTV 165 (626)
Q Consensus 155 g~Y~C~a~n~~ 165 (626)
..|+|.+....
T Consensus 79 ~~~sC~V~H~~ 89 (100)
T cd07699 79 KVYTCEVTHEG 89 (100)
T ss_pred CeEEEEEEecC
Confidence 68999997654
No 340
>cd05770 IgC_beta2m Class I major histocompatibility complex (MHC) beta2-microglobulin. IgC_beta2m: Immunoglobulin-like domain in beta2-Microglobulin (beta2m). Beta2m is the non-covalently bound light chain of the human class I major histocompatibility complex (MHC-I). Beta2m is structured as a beta-sandwich domain composed of two facing beta-sheets (four stranded and three stranded), that is typical of the C-type immunoglobulin superfamily. This structure is stabilized by an intramolecular disulfide bridge connecting two Cys residues in the facing beta -sheets. In vivo, MHC-I continuously exposes beta2m on the cell surface, where it may be released to plasmatic fluids, transported to the kidneys, degraded and then excreted.
Probab=97.61 E-value=0.00035 Score=51.58 Aligned_cols=62 Identities=13% Similarity=0.185 Sum_probs=40.5
Q ss_pred CCCceEEEEeeeCCC-CCC-eeEEEeCCEEccCCC---cEEEccCCcEEEc---cCCCCCCEEEEEEEEcC
Q psy12061 3 GEGGNVTIFCNPEAA-PKP-KFVWKKDGNIIGSGG---RRKIFENGNLLIS---PVSRDDSGIYSCTATNV 65 (626)
Q Consensus 3 ~~G~~~~l~C~~~g~-p~p-~i~W~~~~~~i~~~~---~~~~~~~g~L~i~---~v~~~d~G~Y~C~a~n~ 65 (626)
..|+..+|.|.+.|. |.. .|+|+|||.++. +. ...--.+++..+. .+...+...|.|.+...
T Consensus 13 ~~g~~~~L~C~a~gFyP~~i~v~W~~dg~~~~-~~~~~~~~p~~d~tyq~~s~l~~~~~~~~~ysC~V~H~ 82 (93)
T cd05770 13 ENGKPNVLNCYVTGFHPPDIEIRLLKNGVKIP-KVEQSDLSFSKDWTFYLLKSTEFTPTKGDEYACRVRHN 82 (93)
T ss_pred cCCCceEEEEEEEEEeCCCCEEEEEECCEECC-CcEECcEEECCCCCEEEEEEEEECCCCCCeEEEEEEEC
Confidence 346678999999995 544 899999999986 31 1111223432211 23456778899999864
No 341
>cd05772 IgC_SIRP Signal-regulatory protein (SIRP) immunoglobulin-like domain. IgC_SIRP: Immunoglobulin-like domain of signal-regulatory proteins (SIRP); the signal-regulatory proteins (SIRP) are Ig-like cell surface receptors detected in hematopoietic and non-hematopoietic cells. While their extracellular domains are similar, SIRP are classified as alpha or beta based on the length of the intracytoplasmic domain. Those having a 110- to 113-amino acid tail are classified as SIRP-alpha, and those having a 5-amino acid tail as SIRP-beta. SIRP-alpha and SIRP-beta molecules are thought to have complementary roles in signal regulation: SIRP-alpha inhibit signalling via their immunoreceptor tyrosine (IT)-based inhibition motifs while SIRP-beta are activating. SIRP-beta lack the cytoplasmic domainof SIRP-alpha, and associate with at least one other transmembrane protein (DAP-12 or KARAP). The IT-based activation motifs within DAP-12's cytoplasmic domain may link SIRP-beta to the activating
Probab=97.59 E-value=0.00064 Score=52.26 Aligned_cols=63 Identities=17% Similarity=0.384 Sum_probs=42.5
Q ss_pred CCCceEEEEeeeCCC-CC-CeeEEEeCCEEccCCCcEEE-ccCC-------cEEEccCCCCCCE-EEEEEEEcCC
Q psy12061 3 GEGGNVTIFCNPEAA-PK-PKFVWKKDGNIIGSGGRRKI-FENG-------NLLISPVSRDDSG-IYSCTATNVH 66 (626)
Q Consensus 3 ~~G~~~~l~C~~~g~-p~-p~i~W~~~~~~i~~~~~~~~-~~~g-------~L~i~~v~~~d~G-~Y~C~a~n~~ 66 (626)
..|+.++|.|.+.|. |. .+|+|+|||..+........ ..++ .|.+. ....|.| .|.|.+....
T Consensus 19 ~~g~~~tL~C~a~gF~P~~i~v~W~kng~~~~~~~~~~~p~~d~~ty~~~S~L~~~-~~~~d~~~~ytC~V~H~~ 92 (111)
T cd05772 19 NPGQSVNFTCSAHGFSPRDITVKWLKNGNELSAEQPNITPEGDSVSYNVTSTVQVK-LTEDDVHSQVTCEVQHRT 92 (111)
T ss_pred CCCCCEEEEEEEeeEeCCCCEEEEEECCEECcccccceeeCCCCCcEEEEEEEEEE-CccccccCceEEEEEeCC
Confidence 467889999999986 64 59999999999864322111 1232 25555 3445555 5999998764
No 342
>cd05761 Ig2_Necl-1-4_like Second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-4 (also known as cell adhesion molecules CADM3, CADM1, CADM2, and CADM4, respectively). Ig2_Necl-1-4_like: domain similar to the second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), Necl-3 (CADM2) and Necl-4 (CADM4). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cel
Probab=97.59 E-value=0.00048 Score=50.01 Aligned_cols=68 Identities=16% Similarity=0.220 Sum_probs=40.9
Q ss_pred cEEEEEEeccc-CCcceeEEEeeCCEEeccccCCcc-CCCeeEecCCeEEEeecCCCCCEeEEEEEEeCCCc
Q psy12061 98 NLQLRCSAHTE-ELLDVAYIWTHNGVRIGNMDLNEL-ETPNINIDGGLLEITNASFADAGEYECVVKSTVGK 167 (626)
Q Consensus 98 ~~~l~C~~~~~-p~p~~~i~W~~~~~~~~~~~~~~~-~~~~~~~~~~~l~i~~~~~~d~g~Y~C~a~n~~g~ 167 (626)
.++|.|.+.+. |. +.|.|+++|..+........ .....-...+.|.+......+.+.|+|.|.+....
T Consensus 1 ~~~L~C~~~~~~P~--~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~s~l~~~~~~~d~g~~~~C~v~h~~l~ 70 (82)
T cd05761 1 EVELTCTSSGSKPA--ATIRWFKGDKELKGVKLKEEDENGKTFTVTSSLRFQVDREDDGAPIICRVDHPALK 70 (82)
T ss_pred CEEEEEEecCcCcC--CeEEEEECCEEccCceeeEecCCCCEEEEEEEEEEEcchhhCCCEEEEEEeChhcC
Confidence 36899999886 54 37799999999864310000 00011111234555444455667999999987654
No 343
>PF08205 C2-set_2: CD80-like C2-set immunoglobulin domain ; InterPro: IPR013162 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the C2-set type domains found in the T-cell antigen CD80, as well as in related proteins. CD80 (B7-1) is a glycoprotein expressed on antigen-presenting cells []. The shared ligands on CD80 and CD86 (B7-2) deliver the co-stimulatory signal through CD28 and CTLA-4 on T-cells, where CD28 augments the T-cell response and CTLA-4 attenuates it [].; PDB: 3S58_A 3O3U_N 3CJJ_A 3S59_A 2PF6_B 2PET_A 3ALP_A 3SKU_D 3U83_A 3U82_B ....
Probab=97.59 E-value=0.00016 Score=53.79 Aligned_cols=65 Identities=26% Similarity=0.519 Sum_probs=43.2
Q ss_pred CCceEEEEeee-CCCCCCeeEEEeCCEEccCC--CcEEEccCC------cEEEccCCCCCCEEEEEEEEcCCCC
Q psy12061 4 EGGNVTIFCNP-EAAPKPKFVWKKDGNIIGSG--GRRKIFENG------NLLISPVSRDDSGIYSCTATNVHGM 68 (626)
Q Consensus 4 ~G~~~~l~C~~-~g~p~p~i~W~~~~~~i~~~--~~~~~~~~g------~L~i~~v~~~d~G~Y~C~a~n~~g~ 68 (626)
+|+.+.|.|.+ .|.|+|.|+|+.++..+... .......++ .|.+..-..+|...++|.|.+....
T Consensus 13 ~~~~~~~~C~s~~~~P~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~S~l~~~~~~~~~~~~~~C~~~~~~~~ 86 (89)
T PF08205_consen 13 EGEEVTLTCSSSGGYPPPQITWYLDGGPVVASNTTQSSSPDNGLFTVSSTLTLTPTREDHGKTLTCRASHPALS 86 (89)
T ss_dssp STEEEEEEEEEEEEBS-EEEEEEETTCEECEEEEEEEEETTTTTEEEEEEEEEETTGGGTTEEEEEEEEETTCC
T ss_pred cceEEEEEEEeCCeECCeEEEEEECCCceeeeeeeeeeccCCCcceEEEEEEEEcChHHCCeEEEEEEECCccC
Confidence 36799999987 55699999999999887211 111111122 3777655556778899999987543
No 344
>cd05768 IgC_CH4 CH4 domain (fourth constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH4: The fourth immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=97.58 E-value=0.00019 Score=54.39 Aligned_cols=40 Identities=20% Similarity=0.392 Sum_probs=31.3
Q ss_pred CCCceEEecCCcEEEEEEecccCCcceeEEEeeCCEEecc
Q psy12061 87 LPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGN 126 (626)
Q Consensus 87 ~~~~~~v~~g~~~~l~C~~~~~p~p~~~i~W~~~~~~~~~ 126 (626)
+|....+..|..++|.|.+.|--++.+.+.|++||+++..
T Consensus 7 ~p~~~~~~~~~~~tL~C~a~gFyP~~i~v~W~k~g~~~~~ 46 (102)
T cd05768 7 PPPSEELSLQETATLTCLVKGFSPSDIFVKWLQNGQPLSK 46 (102)
T ss_pred CcChHHhCcCCceEEEEEEeeEeCCCCEEEEEECCEECCc
Confidence 3444444567899999999996666799999999998754
No 345
>smart00406 IGv Immunoglobulin V-Type.
Probab=97.56 E-value=0.00015 Score=52.92 Aligned_cols=56 Identities=27% Similarity=0.475 Sum_probs=39.4
Q ss_pred eEEEEeeeCCCCCC--eeEEEeCCE--E---cc-------------CCCcEEEccC-----CcEEEccCCCCCCEEEEEE
Q psy12061 7 NVTIFCNPEAAPKP--KFVWKKDGN--I---IG-------------SGGRRKIFEN-----GNLLISPVSRDDSGIYSCT 61 (626)
Q Consensus 7 ~~~l~C~~~g~p~p--~i~W~~~~~--~---i~-------------~~~~~~~~~~-----g~L~i~~v~~~d~G~Y~C~ 61 (626)
+|+|.|.+.+...+ .+.|++... . |. ..+|+.+..+ -+|.|.+++.+|+|.|.|.
T Consensus 1 ~v~l~C~~~~~~~~~~~v~W~~~~~~~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~ 80 (81)
T smart00406 1 SVTLSCKASGFTFSSYYVSWVRQPPGKGLEWLGYIGSSGSTYYQQSYKGRVTISKDTSKNDVSLTISNLRVEDTGTYYCA 80 (81)
T ss_pred CEEEEEEEeccccceeEEEEEEeCCCCCeEEEEEEcCCCcEEECcccCCcEEEEecCcCCEEEEEEcCCCHHHCEEEEEc
Confidence 48999999776543 899998431 1 10 1245555433 1599999999999999996
Q ss_pred E
Q psy12061 62 A 62 (626)
Q Consensus 62 a 62 (626)
+
T Consensus 81 v 81 (81)
T smart00406 81 V 81 (81)
T ss_pred C
Confidence 3
No 346
>cd07699 IgC_L Immunoglobulin Constant domain. IgC_L: Immunoglobulin (Ig) light chain constant (C) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.
Probab=97.56 E-value=0.00029 Score=53.25 Aligned_cols=63 Identities=22% Similarity=0.479 Sum_probs=43.2
Q ss_pred CCceEEEEeeeCCC-C-CCeeEEEeCCEEccCC---CcEEEccCCc------EEEccCCCCCCEEEEEEEEcCC
Q psy12061 4 EGGNVTIFCNPEAA-P-KPKFVWKKDGNIIGSG---GRRKIFENGN------LLISPVSRDDSGIYSCTATNVH 66 (626)
Q Consensus 4 ~G~~~~l~C~~~g~-p-~p~i~W~~~~~~i~~~---~~~~~~~~g~------L~i~~v~~~d~G~Y~C~a~n~~ 66 (626)
+++.++|.|.+.|. | ..+|+|+|||.++..+ .....-.+|+ |.+..-..++...|+|.+....
T Consensus 16 ~~~~~~L~C~~~gfyP~~i~v~W~~~g~~~~~~~~~~~~~~~~dgty~~~s~L~v~~~~w~~~~~~sC~V~H~~ 89 (100)
T cd07699 16 KSGKATLVCLINDFYPGFATVQWKVDGATVSSGVQTSTTEQQSDNTYSLSSYLTLTKSDWNKHKVYTCEVTHEG 89 (100)
T ss_pred cCCCcEEEEEEEeEECCCCEEEEEECCEECcccEeccccEECCCCCEEEEEEEEEcHHHhCCCCeEEEEEEecC
Confidence 46789999999995 6 4599999999998532 1111122453 5555444456779999998654
No 347
>cd05847 IgC_CH2_IgE CH2 domain (second constant Ig domain of the heavy chain) in immunoglobulin E (IgE). IgC_CH2_IgE: The second constant domain of the heavy chain of immunoglobulin E (IgE). The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma, and mu, all consisting of a variable domain (VH) and three (in alpha, delta, and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). The different classes of antibodies vary in their heavy chains; the IgE class has the epsilon type. This domain (Cepsilon2) of IgE is in place of the flexible hinge region found in IgG.
Probab=97.55 E-value=0.00032 Score=52.13 Aligned_cols=71 Identities=15% Similarity=0.246 Sum_probs=43.7
Q ss_pred ecCCcEEEEEEecccCCcceeEEEeeCCEEeccccCCccCCCeeEecCC------eEEEeecCCCCCEeEEEEEEeCCCc
Q psy12061 94 AAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGG------LLEITNASFADAGEYECVVKSTVGK 167 (626)
Q Consensus 94 ~~g~~~~l~C~~~~~p~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~------~l~i~~~~~~d~g~Y~C~a~n~~g~ 167 (626)
...+.++|.|.+.+--++.|+++|++||..+....... ......++ .|.|..-.-.+...|+|.+......
T Consensus 12 ~~~~~~~L~C~a~gFyP~~I~vtW~~dg~~~~~~~~~s---~~~~~~~~Ty~~~S~L~v~~~~w~~~~~ytC~V~H~~~~ 88 (94)
T cd05847 12 GTSETIQLLCLISGYTPGTIEVEWLVDGQVATLVAAST---APQKEEGSTFSTTSELNVTQEDWKSGKTYTCKVTHQGTT 88 (94)
T ss_pred CCCCCEEEEEEEEeEECCCCEEEEEECCEECcCceeec---ccEECCCCcEEEEEEEEEchHHhcCCCeEEEEEEECCee
Confidence 35677999999999655679999999999874321100 11111222 3333332223556899999876544
No 348
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=97.55 E-value=0.34 Score=57.38 Aligned_cols=116 Identities=16% Similarity=0.172 Sum_probs=63.7
Q ss_pred CCCCEEEE--EEEEcCCCCceeeEEEEEEeCCceeeeC-------------CCceEEecCCcEEEEEEecccCCcceeEE
Q psy12061 52 RDDSGIYS--CTATNVHGMDESKGRLIVLHGPSYYEQL-------------PPKITIAAHRNLQLRCSAHTEELLDVAYI 116 (626)
Q Consensus 52 ~~d~G~Y~--C~a~n~~g~~~~~~~l~v~~~p~~~~~~-------------~~~~~v~~g~~~~l~C~~~~~p~p~~~i~ 116 (626)
....|.|. -.|.|..|...++..+.|..+-..+... .....+..+..+.|.-..... ..+++.
T Consensus 1564 Y~spGtYtVtLTvtN~~Gs~~~T~~i~V~~~I~GlqI~~~~~~gg~~~~~~~~~~~~~t~~~v~l~~~~~~G--Tnvsys 1641 (2740)
T TIGR00864 1564 FRSVGTFNIIVTAENDVGAAQASIFLFVLQEIEGLQILGETAEGGGGGVQELDGCYFETNHTVQFHAGFKDG--TNLSFS 1641 (2740)
T ss_pred ecCCceEEEEEEEecCCCccceeEEEEEeecccceEEEeecccccCCcccccccceeccCCEEEeeeccCCC--CeeEEE
Confidence 34567775 4677999998888888776543222111 111345666777777555443 346889
Q ss_pred EeeCCEEeccccCCccCCCeeEecCCeEEEeecCCCCCEeEEEE--EEeCCCceEEEEEEEEeCC
Q psy12061 117 WTHNGVRIGNMDLNELETPNINIDGGLLEITNASFADAGEYECV--VKSTVGKISTKTTVIVEGP 179 (626)
Q Consensus 117 W~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~--a~n~~g~~~~~~~l~v~~~ 179 (626)
|..-+..-... ......+.... +...+.|.|... |.|..|....+..+.+.+|
T Consensus 1642 W~~~~~n~~dg-------~~~~~tGk~~~---vt~~~pG~Y~VtL~aSN~vG~~t~s~~i~v~ep 1696 (2740)
T TIGR00864 1642 WNAILDNEPDG-------PAFAGSGKGAK---LNPLEAGPCDIFLQAANLLGQATADCTIDFLEP 1696 (2740)
T ss_pred EEEecCCCCCC-------ccccccCceeE---EecCCCceEEEEEEEeecccceeeEEEEEEEEE
Confidence 97621100000 00001111222 223666776664 5799999888877777653
No 349
>cd05847 IgC_CH2_IgE CH2 domain (second constant Ig domain of the heavy chain) in immunoglobulin E (IgE). IgC_CH2_IgE: The second constant domain of the heavy chain of immunoglobulin E (IgE). The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma, and mu, all consisting of a variable domain (VH) and three (in alpha, delta, and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). The different classes of antibodies vary in their heavy chains; the IgE class has the epsilon type. This domain (Cepsilon2) of IgE is in place of the flexible hinge region found in IgG.
Probab=97.55 E-value=0.00037 Score=51.76 Aligned_cols=64 Identities=16% Similarity=0.284 Sum_probs=42.7
Q ss_pred CceEEEEeeeCCC-CC-CeeEEEeCCEEccCC---CcEEEccCC------cEEEccCCCCCCEEEEEEEEcCCCC
Q psy12061 5 GGNVTIFCNPEAA-PK-PKFVWKKDGNIIGSG---GRRKIFENG------NLLISPVSRDDSGIYSCTATNVHGM 68 (626)
Q Consensus 5 G~~~~l~C~~~g~-p~-p~i~W~~~~~~i~~~---~~~~~~~~g------~L~i~~v~~~d~G~Y~C~a~n~~g~ 68 (626)
++.++|.|.+.|. |. .+|+|+|||..+..+ .....-.++ .|.|..-...+...|+|.+......
T Consensus 14 ~~~~~L~C~a~gFyP~~I~vtW~~dg~~~~~~~~~s~~~~~~~~Ty~~~S~L~v~~~~w~~~~~ytC~V~H~~~~ 88 (94)
T cd05847 14 SETIQLLCLISGYTPGTIEVEWLVDGQVATLVAASTAPQKEEGSTFSTTSELNVTQEDWKSGKTYTCKVTHQGTT 88 (94)
T ss_pred CCCEEEEEEEEeEECCCCEEEEEECCEECcCceeecccEECCCCcEEEEEEEEEchHHhcCCCeEEEEEEECCee
Confidence 4669999999995 65 499999999987322 111222233 3656544445678999999876433
No 350
>cd07705 Ig2_Necl-1 Second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). Ig2_Necl-1: second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue and is important to the formation of synapses, axon bundles, and myel
Probab=97.53 E-value=0.00076 Score=48.95 Aligned_cols=68 Identities=15% Similarity=0.169 Sum_probs=41.1
Q ss_pred EEEEEEecccCCcceeEEEeeCCEEeccccC--CccCCCeeEecCCeEEEeecCCCCCEeEEEEEEeCCCc
Q psy12061 99 LQLRCSAHTEELLDVAYIWTHNGVRIGNMDL--NELETPNINIDGGLLEITNASFADAGEYECVVKSTVGK 167 (626)
Q Consensus 99 ~~l~C~~~~~p~p~~~i~W~~~~~~~~~~~~--~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~a~n~~g~ 167 (626)
++|.|.+.+.-++ +.|.|++||..+..... ........-...+.|.|......+...|+|.+.+....
T Consensus 2 ~~LtC~a~g~~P~-~~ItW~k~g~~l~~~~~~~~~~~~~~t~~~~s~l~~~~~~~d~g~~~tC~v~h~~l~ 71 (83)
T cd07705 2 AKLRCTSSGSKPA-ANIKWRKGDQELEGAPTSVLEDGNGKTFTVSSSVEFQVTREDDGAEITCSVGHESLH 71 (83)
T ss_pred EEEEEEecCccCC-CEeEEEECCEECCCcceeEEECCCCCEEEEEEEEEEEecchhCCCEEEEEEECcccC
Confidence 6899999986333 47899999998865321 00000000011234445455556678999999987643
No 351
>cd05716 Ig_pIgR Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR). Ig_pIgR: Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR). pIgR delivers dimeric IgA and pentameric IgM to mucosal secretions. Polymeric immunoglobulin (pIgs) are the first defense against pathogens and toxins. IgA and IgM can form polymers via an 18-residue extension at their c-termini referred to as the tailpiece. pIgR transports pIgs across mucosal epithelia into mucosal secretions. Human pIgR is a glycosylated type I transmembrane protein, comprised of a 620 residue extracellular region, a 23 residue transmembrane region, and a 103 residue cytoplasmic tail. The extracellular region contains five domains that share sequence similarity with Ig variable (v) regions.
Probab=97.53 E-value=0.00043 Score=52.52 Aligned_cols=74 Identities=15% Similarity=0.177 Sum_probs=46.6
Q ss_pred eEEecCCcEEEEEEecccCCcceeEEEeeCCEE-----eccc-cCCccCCCeeEe------cCCeEEEeecCCCCCEeEE
Q psy12061 91 ITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVR-----IGNM-DLNELETPNINI------DGGLLEITNASFADAGEYE 158 (626)
Q Consensus 91 ~~v~~g~~~~l~C~~~~~p~p~~~i~W~~~~~~-----~~~~-~~~~~~~~~~~~------~~~~l~i~~~~~~d~g~Y~ 158 (626)
+.+.+|++++|.|...... ....+.|+|.... +... ........|+.+ ....|+|.+++.+|+|.|.
T Consensus 2 v~~~~G~~vtl~C~~~~~~-~~~~~~W~r~~~~~~~~~l~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~ 80 (98)
T cd05716 2 VTGELGGSVTIPCPYPPKN-RSYEKYWCKWGSAGCCLIIVSEGSVQSQYEGRVSLTDDPDNGVFTVTLNQLRKEDAGWYW 80 (98)
T ss_pred EEEEeCCeEEEEeeCCCCC-CCcEeEeECCCCCCCCeEEECCCccccccCCCEEEEecCCCCEEEEEEcCCCHHHCEEEE
Confidence 4678999999999987632 2235689985321 1000 000011233333 1247999999999999999
Q ss_pred EEEEeCC
Q psy12061 159 CVVKSTV 165 (626)
Q Consensus 159 C~a~n~~ 165 (626)
|.+....
T Consensus 81 C~~~~~~ 87 (98)
T cd05716 81 CGVGDDG 87 (98)
T ss_pred EEcccCC
Confidence 9887654
No 352
>KOG4152|consensus
Probab=97.52 E-value=0.00046 Score=65.18 Aligned_cols=125 Identities=22% Similarity=0.304 Sum_probs=80.6
Q ss_pred EeCCccCceEEEEEEEeeCCCCCCCCccEEEeecCCCCCCCCceEEEeeeCCCEEEEEEeecCCCCC-CCceeeEEEEEE
Q psy12061 456 IVGLQPDTKYYVKVMAYNNAGEGPESERYLERTYRKAPQKPPSAVHIKGINPTTVHVTWRYVSPSFE-EEPIIGYKVRVW 534 (626)
Q Consensus 456 i~~L~p~t~Y~v~V~a~~~~g~s~~s~~~~~~t~~~~p~~~p~~l~~~~~~~~~~~l~W~~~~~~~~-~~~i~~Y~i~~~ 534 (626)
-..|-+|+.|.|+|.|+|..|.+++|....+.|-...-+.+|+.+++. .+-..+.|.|+ +|... .|.|..|..+.-
T Consensus 651 k~~lv~Gq~yrfrV~aIng~G~gp~s~i~~~kTc~pG~P~apS~~ri~-k~~eGi~l~we--ppt~p~sg~Iieys~ylA 727 (830)
T KOG4152|consen 651 KTSLVTGQAYRFRVTAINGKGPGPASTILKLKTCAPGKPTAPSGARIK-KTIEGISLVWE--PPTKPGSGTIIEYSPYLA 727 (830)
T ss_pred ccccccccceeeeeeeeeccCCCchhhheeeeeccCCCCCCccccccc-ccccceeeccc--CCCCCCCcceEEeehhhH
Confidence 357889999999999999999999999988887654444577777665 35567999999 44444 678888877432
Q ss_pred EeccC----CccccceeeecCccceE---------EecCCCCCceEEEEEEEEecCCCCCCC
Q psy12061 535 EVDQD----MSRANDTIIPVGNTLDA---------DIVDLSPGKRYHMRVLAFSNGGDGRMS 583 (626)
Q Consensus 535 ~~~~~----~~~~~~~~~~~~~~~~~---------~l~~L~p~~~Y~~~V~a~~~~G~g~~s 583 (626)
-..+. ..........-+-.+.+ -+.+...+..--|+|.|.|+.|.|+..
T Consensus 728 i~tq~~~~~~sql~fmr~ycg~~t~c~vt~g~l~tA~~d~t~~paivfri~aknekGyGpat 789 (830)
T KOG4152|consen 728 IITQAGATGVSQLPFMRSYCGIITTCVVTSGKLITAVPDITTGPAIVFRIVAKNEKGYGPAT 789 (830)
T ss_pred hhhhhhccCccccceeeeecccceeeEEecccceeeccccccCcceEEEEEecCCCCCCcce
Confidence 21111 00000000111111111 122334466788999999999998744
No 353
>cd07698 IgC_MHC_I_alpha3 Class I major histocompatibility complex (MHC) alpha chain immunoglobulin domain. IgC_MHC_I_alpha3; Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class I alpha chain. Class I MHC proteins bind antigenic peptide fragments and present them to CD8+ T lymphocytes. Class I molecules consist of a transmembrane alpha chain and a small chain called the beta2 microglobulin. The alpha chain contains three extracellular domains, two of which fold together to form the peptide-binding cleft (alpha1 and alpha2), and one which has an Ig fold (alpha3). Peptide binding to class I molecules occurs in the endoplasmic reticulum (ER) and involves both chaperones and dedicated factors to assist in peptide loading. Class I MHC molecules are expressed on most nucleated cells.
Probab=97.52 E-value=0.00042 Score=51.80 Aligned_cols=62 Identities=23% Similarity=0.459 Sum_probs=40.3
Q ss_pred CceEEEEeeeCCC-CCC-eeEEEeCCEEccCC---CcEEEccCCcE---EEccCCCCCCEEEEEEEEcCC
Q psy12061 5 GGNVTIFCNPEAA-PKP-KFVWKKDGNIIGSG---GRRKIFENGNL---LISPVSRDDSGIYSCTATNVH 66 (626)
Q Consensus 5 G~~~~l~C~~~g~-p~p-~i~W~~~~~~i~~~---~~~~~~~~g~L---~i~~v~~~d~G~Y~C~a~n~~ 66 (626)
|+.++|.|.+.|. |.+ +++|+|+|..+... .......+|+. ..-.+..+|.+.|+|.+....
T Consensus 14 ~~~~~L~C~a~gF~P~~i~v~W~~~g~~~~~~~~~~~~~~~~d~ty~~~s~l~v~~~~~~~ytC~V~H~~ 83 (93)
T cd07698 14 DGSLTLSCHATGFYPRDIEVTWLRDGEDSVDDVESGEILPNGDGTYQLWVTLEVPPEDKARYSCRVEHSG 83 (93)
T ss_pred CCcEEEEEEEEEEeCCCcEEEEEECCEECcccccccceEECCCCeEEEEEEEEECCCCCCEEEEEEEeCC
Confidence 7789999999996 654 99999999744322 12222234421 112233458899999998663
No 354
>cd05768 IgC_CH4 CH4 domain (fourth constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH4: The fourth immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=97.50 E-value=0.00025 Score=53.70 Aligned_cols=62 Identities=15% Similarity=0.269 Sum_probs=40.9
Q ss_pred CCceEEEEeeeCCC-CCC-eeEEEeCCEEccCCCcEE----Ec--cCCc------EEEccCCCCCCEEEEEEEEcC
Q psy12061 4 EGGNVTIFCNPEAA-PKP-KFVWKKDGNIIGSGGRRK----IF--ENGN------LLISPVSRDDSGIYSCTATNV 65 (626)
Q Consensus 4 ~G~~~~l~C~~~g~-p~p-~i~W~~~~~~i~~~~~~~----~~--~~g~------L~i~~v~~~d~G~Y~C~a~n~ 65 (626)
.|+.++|.|.+.|. |.. +++|+|||.++....... .. .+|+ |.|..-...+...|+|.+...
T Consensus 15 ~~~~~tL~C~a~gFyP~~i~v~W~k~g~~~~~~~~~~~~~~~~~~~dgTy~~~s~L~v~~~~w~~~~~ytC~V~H~ 90 (102)
T cd05768 15 LQETATLTCLVKGFSPSDIFVKWLQNGQPLSKQKYVTTAPMQEPGGNESYFLYSKLTVSAEDWNAGDVFTCVVGHE 90 (102)
T ss_pred cCCceEEEEEEeeEeCCCCEEEEEECCEECCcccccccCcccccCCCCeEEEEEEEEEcHHHhcCCCcEEEEeEeC
Confidence 57899999999996 544 789999999985432111 11 1343 555433334566899999754
No 355
>cd05767 IgC_MHC_II_alpha Class II major histocompatibility complex (MHC) alpha chain immunoglobulin domain. IgC_MHC_II_alpha: Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class II alpha chain. MHC class II molecules play a key role in the initiation of the antigen-specific immune reponse. In both humans and in mice these molecules have been shown to be expressed constitutively on the cell surface of professional antigen-presenting cells (APCs), for example on B-lymphocytes, monocytes, and macrophages. The expression of these molecules has been shown to be induced in nonprofessional APCs such as keratinocyctes, and they are expressed on the surface of activated human T cells and on T cells from other species. The MHC II molecules present antigenic peptides to CD4(+) T-lymphocytes. These peptides derive mostly from protelytic processing via the endocytic pathway, of antigens internalized by the APC. These peptides bind to the MHC class II molecules in the endosom
Probab=97.47 E-value=0.0006 Score=50.56 Aligned_cols=59 Identities=24% Similarity=0.418 Sum_probs=40.2
Q ss_pred CCceEEEEeeeCCC-CCC-eeEEEeCCEEccCC---CcEEEccCCc------EEEccCCCCCCEEEEEEEEcC
Q psy12061 4 EGGNVTIFCNPEAA-PKP-KFVWKKDGNIIGSG---GRRKIFENGN------LLISPVSRDDSGIYSCTATNV 65 (626)
Q Consensus 4 ~G~~~~l~C~~~g~-p~p-~i~W~~~~~~i~~~---~~~~~~~~g~------L~i~~v~~~d~G~Y~C~a~n~ 65 (626)
.|+.++|.|.+.|. |.. .++|+|||.++..+ .....-.+|+ |.+. .++...|+|.+...
T Consensus 14 ~~~~~tL~C~a~gFyP~~I~v~W~~~g~~~~~~~~~~~~~~~~Dgty~~~s~L~v~---~~~~~~ytC~V~H~ 83 (94)
T cd05767 14 LGEPNTLICFVDNFFPPVLNVTWLKNGVPVTDGVSETRYYPRQDLSFQKFSYLNFT---PEEGDIYSCIVEHW 83 (94)
T ss_pred CCCCeEEEEEEEEEECCcCEEEEEECCeEccCceEEeeeEeCCCCcEEEEEEEEEE---CCCCCeEEEEEEeC
Confidence 45668999999996 654 89999999998543 1122223442 5544 34566899999754
No 356
>cd07700 IgV_CD8_beta Immunoglobulin (Ig) like domain of CD8 beta chain. IgV_CD8_beta: immunoglobulin (Ig)-like domain in CD8 beta. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alpha/alpha or alpha/beta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a V-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain.
Probab=97.47 E-value=0.00048 Score=53.16 Aligned_cols=71 Identities=17% Similarity=0.294 Sum_probs=43.6
Q ss_pred EEecCCcEEEEEEecccCCcceeEEEeeCCEE-----e------cccc-CC---ccCCCeeEe--c----CCeEEEeecC
Q psy12061 92 TIAAHRNLQLRCSAHTEELLDVAYIWTHNGVR-----I------GNMD-LN---ELETPNINI--D----GGLLEITNAS 150 (626)
Q Consensus 92 ~v~~g~~~~l~C~~~~~p~p~~~i~W~~~~~~-----~------~~~~-~~---~~~~~~~~~--~----~~~l~i~~~~ 150 (626)
.+.+|++++|.|.+.+.... ..+.|+|-... + .... .. .....++.. . ...|+|.+++
T Consensus 2 ~v~~G~~vtL~C~~~~~~~~-~~~~Wyrq~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~I~~~~ 80 (107)
T cd07700 2 LVQTNNTVKLSCEAKGISEN-TRIYWLRWRQAPKDSHFEFLALWSPLGGATYGEEVSQEKFSIRVTSDSSRYRLHINRVK 80 (107)
T ss_pred EEcCCCCEEEEEEEecCCCC-CeEEEEEECCCCCCCccEEEEEEcCCCCeEEccccccCcEEEEEECCCCEEEEEECCCC
Confidence 57899999999998764322 25689973211 0 0000 00 001123322 1 1359999999
Q ss_pred CCCCEeEEEEEEe
Q psy12061 151 FADAGEYECVVKS 163 (626)
Q Consensus 151 ~~d~g~Y~C~a~n 163 (626)
.+|+|.|.|...+
T Consensus 81 ~~Dsg~YyCa~~~ 93 (107)
T cd07700 81 PEDSGTYFCMTVG 93 (107)
T ss_pred HHHCEEEEEeEcC
Confidence 9999999998753
No 357
>smart00407 IGc1 Immunoglobulin C-Type.
Probab=97.43 E-value=0.00069 Score=48.17 Aligned_cols=65 Identities=17% Similarity=0.303 Sum_probs=40.6
Q ss_pred cEEEEEEecccCCcceeEEEeeCCEEeccccCCccCCCeeEecC------CeEEEeecCCCCCEeEEEEEEeCC
Q psy12061 98 NLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDG------GLLEITNASFADAGEYECVVKSTV 165 (626)
Q Consensus 98 ~~~l~C~~~~~p~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~------~~l~i~~~~~~d~g~Y~C~a~n~~ 165 (626)
.++|.|.+.+--++.+.+.|+|||+++...... .......+ +.|.|......+...|+|.+....
T Consensus 1 ~~~L~C~a~gf~P~~i~v~W~k~g~~~~~~~~~---~~~~~~~~gt~~~~s~L~v~~~~~~~~~~~tC~V~H~~ 71 (75)
T smart00407 1 KATLVCLVSGFYPPDITVTWLRNGQEVTSGVST---TDPLKNSDGTYFLSSYLTVSASTWESGDTYTCQVTHEG 71 (75)
T ss_pred CeEEEEEEEeEeCCCCEEEEEECCEECCCCEEE---CceEECCCCCEEEEEEEEEccccCCCCCEEEEEEEEcC
Confidence 378999999975566889999999975432100 00011122 345554445567779999997653
No 358
>cd05766 IgC_MHC_II_beta Class II major histocompatibility complex (MHC) beta chain immunoglobulin domain. IgC_MHC_II_beta: Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class II beta chain. MHC class II molecules play a key role in the initiation of the antigen-specific immune reponse. In both humans and in mice these molecules have been shown to be expressed constitutively on the cell surface of professional antigen-presenting cells (APCs), for example on B-lymphocytes, monocytes, and macrophages. The expression of these molecules has been shown to be induced in nonprofessional APCs such as keratinocyctes, and they are expressed on the surface of activated human T cells and on T cells from other species. The MHC II molecules present antigenic peptides to CD4(+) T-lymphocytes. These peptides derive mostly from protelytic processing via the endocytic pathway, of antigens internalized by the APC. These peptides bind to the MHC class II molecules in the endosome be
Probab=97.40 E-value=0.0008 Score=50.11 Aligned_cols=69 Identities=17% Similarity=0.201 Sum_probs=43.0
Q ss_pred ecCCcEEEEEEecccCCcceeEEEeeCCEEeccccCCccCCCeeEecCCeEEE---eecCCCCCEeEEEEEEeCC
Q psy12061 94 AAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEI---TNASFADAGEYECVVKSTV 165 (626)
Q Consensus 94 ~~g~~~~l~C~~~~~p~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~l~i---~~~~~~d~g~Y~C~a~n~~ 165 (626)
..|+.++|.|.+.+--++.++++|++||..+...... ..-....++++++ ..+..++...|+|.+....
T Consensus 12 ~~~~~~~L~C~~~gFyP~~i~v~W~~~g~~~~~~~~~---~~~~~~~dgTy~~~s~L~~~~~~~~~ysC~V~H~~ 83 (94)
T cd05766 12 SLSHPHLLVCHVWGFYPPEITVKWFKNGQEETEGVVS---TELIPNGDWTYQILVMLETTPSRGDTYTCVVEHSS 83 (94)
T ss_pred cCCCCeEEEEEEeeecCCCCEEEEEECCeecCCCcee---cceEECCCCcEEEEEEEEEcCCCCCEEEEEEEeCC
Confidence 3689999999999966677899999999997653100 0111112222222 1233455668899887654
No 359
>cd05769 IgC_TCR_beta T cell receptor (TCR) beta chain constant immunoglobulin domain. IgC_TCR_beta: Constant domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the beta chain. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The antigen binding site is formed by the variable domains of the alpha and beta chains, located at the N-terminus of each chain. Alpha/beta TCRs recognize antigens differently from gamma/delta TCRs.
Probab=97.39 E-value=0.00075 Score=52.06 Aligned_cols=81 Identities=17% Similarity=0.257 Sum_probs=47.6
Q ss_pred eCCCceEEecCCcEEEEEEecccCCcceeEEEeeCCEEeccccCCccCCCeeEe------cCCeEEEeecCCCC-CEeEE
Q psy12061 86 QLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINI------DGGLLEITNASFAD-AGEYE 158 (626)
Q Consensus 86 ~~~~~~~v~~g~~~~l~C~~~~~p~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~------~~~~l~i~~~~~~d-~g~Y~ 158 (626)
.+|.......++.++|.|.+.+--+..+++.|+|||..+....... ...... -.+.|.|..-.-.+ ...|+
T Consensus 8 ~~ps~~e~~~~~~~tL~Cla~gFyP~~I~V~W~kng~~l~~g~~~~--~~~~~~~~gTYs~~S~L~v~~~~w~~~~~~yt 85 (115)
T cd05769 8 FPPSEAEIRNKRKATLVCLATGFYPDHVSLSWKVNGKEVTDGVATD--PQALRENTSTYSISSRLRVSATEWFNPRNTFT 85 (115)
T ss_pred ECcChHHhccCCCcEEEEEEEeEeCCCcEEEEEECCEECCCCcccc--cceecCCCCeEEEEEEEEEChHHhccCCCeEE
Confidence 3454444556788999999999655678999999999876432100 001111 12234433322223 45899
Q ss_pred EEEEeCCCce
Q psy12061 159 CVVKSTVGKI 168 (626)
Q Consensus 159 C~a~n~~g~~ 168 (626)
|.+.......
T Consensus 86 C~V~H~g~~~ 95 (115)
T cd05769 86 CIVQFYGGTD 95 (115)
T ss_pred EEEEEeCCcc
Confidence 9887654443
No 360
>cd07697 IgC_TCR_gamma T cell receptor (TCR) gamma chain constant immunoglobulin domain. IgC_TCR_gamma; immunoglobulin (Ig) constant (C) domain of the gamma chain of gamma-delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha-beta TCRs but a small subset contain gamma-delta TCRs. Alpha-beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma-delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma-delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds.
Probab=97.39 E-value=0.00044 Score=51.36 Aligned_cols=40 Identities=13% Similarity=-0.009 Sum_probs=30.6
Q ss_pred CCCceEEecCCcEEEEEEecccCCcceeEEEeeCCEEecc
Q psy12061 87 LPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGN 126 (626)
Q Consensus 87 ~~~~~~v~~g~~~~l~C~~~~~p~p~~~i~W~~~~~~~~~ 126 (626)
+|.......++.++|.|.+.+--++.|+++|++||..+..
T Consensus 7 ~ps~~e~~~~~~~tL~C~a~gFyP~~I~v~W~kng~~~~~ 46 (96)
T cd07697 7 SPSKKEIEKQGQGIYLCLLENFFPDVIQVHWREGNSPSIL 46 (96)
T ss_pred CCCHHHHccCCCEEEEEEEEEEeCCCeEEEEEECCEECcC
Confidence 3444444456789999999995556799999999998754
No 361
>PF07654 C1-set: Immunoglobulin C1-set domain; InterPro: IPR003597 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents C1-set domains, which are classical Ig-like domains resembling the antibody constant domain. C1-set domains are found almost exclusively in molecules involved in the immune system, such as in immunoglobulin light and heavy chains, in the major histocompatibility complex (MHC) class I and II complex molecules [, ], and in various T-cell receptors.; PDB: 3BVN_D 3BXN_A 3PWV_E 3L9R_F 2XFX_B 1BMG_A 1K8I_A 3M1B_G 3M17_C 1EXU_A ....
Probab=97.38 E-value=0.0006 Score=49.72 Aligned_cols=61 Identities=28% Similarity=0.494 Sum_probs=43.2
Q ss_pred CCceEEEEeeeCCC-CCC-eeEEEeCCEEccCCCcEE--E-ccCC------cEEEccCCCCCCEEEEEEEEcCCC
Q psy12061 4 EGGNVTIFCNPEAA-PKP-KFVWKKDGNIIGSGGRRK--I-FENG------NLLISPVSRDDSGIYSCTATNVHG 67 (626)
Q Consensus 4 ~G~~~~l~C~~~g~-p~p-~i~W~~~~~~i~~~~~~~--~-~~~g------~L~i~~v~~~d~G~Y~C~a~n~~g 67 (626)
.++.++|.|.+.|. |.. +|.|++||..+....... . -.+| .|.+. .++...|+|.+.....
T Consensus 7 ~~~~~~L~C~v~~f~P~~i~v~W~~~~~~~~~~~~~~~~~~~~dgty~~~s~l~v~---~~~~~~ysC~V~H~~l 78 (83)
T PF07654_consen 7 LGGSVTLTCLVSGFYPKDITVTWLKNGKEVTEGVETTPPPPNSDGTYSVTSSLTVT---WNSGDEYSCRVTHESL 78 (83)
T ss_dssp STSEEEEEEEEEEEBSSTEEEEEEETTEEETTTEEEEEEEEETTSEEEEEEEEEEE---TTTTGGEEEEEEETTS
T ss_pred CCCCEEEEEEEEEEECCCcEEEEEeccceeeeeeeecccccccccceeeeEEEEec---CCCCCEEEEEEEECCC
Confidence 47899999999986 655 899999999986542211 1 2344 36665 5566689999986643
No 362
>cd00096 Ig Immunoglobulin domain. Ig: immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of this group are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as, T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as, butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=97.35 E-value=0.00083 Score=47.25 Aligned_cols=66 Identities=24% Similarity=0.464 Sum_probs=45.3
Q ss_pred EEEEEEecccCCcceeEEEeeCCEEeccccCC-ccCCCeeEecCCeEEEeecCCCCCEeEEEEEEeCCC
Q psy12061 99 LQLRCSAHTEELLDVAYIWTHNGVRIGNMDLN-ELETPNINIDGGLLEITNASFADAGEYECVVKSTVG 166 (626)
Q Consensus 99 ~~l~C~~~~~p~p~~~i~W~~~~~~~~~~~~~-~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~a~n~~g 166 (626)
+.|.|.+.+.+ ...+.|++++......... .............|.|.++...|.|.|.|.+.+..+
T Consensus 1 ~~l~C~~~~~~--~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~ 67 (74)
T cd00096 1 VTLTCLASGPP--PPTITWLKNGKPLPSSVLTRVRSSRGTSSGSSTLTISNVTLEDSGTYTCVASNSAG 67 (74)
T ss_pred CEEEEEecCCC--CCcEEEEECCEECCCcccEEeccccCcceeEEEEEECccCcccCcEEEEEEecCcC
Confidence 47899999833 4567999988776543210 000112223556899999999999999999987763
No 363
>KOG4367|consensus
Probab=97.32 E-value=0.00022 Score=65.32 Aligned_cols=83 Identities=16% Similarity=0.214 Sum_probs=64.0
Q ss_pred eeecceEEEEeeeccccccccceeeEEEEEEEEecCCCccceEEEEecCccceEEEeCCccCceEEEEEEEeeCCCCCCC
Q psy12061 401 GFNSTAINVTWNPIELIRENIRGRLIGHRIKYWKEDNPEETAVYYLSRTTRNWALIVGLQPDTKYYVKVMAYNNAGEGPE 480 (626)
Q Consensus 401 ~~~~~si~l~W~~~~~~~~~~~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~v~V~a~~~~g~s~~ 480 (626)
....++++|+|+.|.... -+.+||.++.-..++..... +..+..+-.++.+|..++.|..+|.|+|..|.+++
T Consensus 449 ~t~nns~t~~wkqp~~~~----~~~dg~~leld~g~~g~fre---vy~g~etmctvdglhfns~y~arvka~n~tg~s~y 521 (699)
T KOG4367|consen 449 CTHNNSATLSWKQPPLST----VPADGYILELDDGNGGQFRE---VYVGKETMCTVDGLHFNSTYNARVKAFNKTGVSPY 521 (699)
T ss_pred hccCCceEEEeecCCCCC----CCCcceEEEeecCCCCceeE---EEecCceeEEecceecchhHHHHHHHhhccCCCcc
Confidence 355679999999666544 44889999975543333222 33455556899999999999999999999999999
Q ss_pred CccEEEeecC
Q psy12061 481 SERYLERTYR 490 (626)
Q Consensus 481 s~~~~~~t~~ 490 (626)
|..+...|.+
T Consensus 522 s~tl~lqts~ 531 (699)
T KOG4367|consen 522 SKTLVLQTSE 531 (699)
T ss_pred cceeEeeecc
Confidence 9999888875
No 364
>cd04981 IgV_H Immunoglobulin (Ig) heavy chain (H), variable (V) domain. IgV_H: Immunoglobulin (Ig) heavy chain (H), variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which can associate with any of the heavy chains. This family includes alpha, gamma, delta, epsilon, and mu heavy chains.
Probab=97.31 E-value=0.001 Score=52.19 Aligned_cols=77 Identities=14% Similarity=0.184 Sum_probs=48.0
Q ss_pred CCCceEEecCCcEEEEEEecccCCcceeEEEeeC--CEEec----cc---cC---CccCCCeeEec----C--CeEEEee
Q psy12061 87 LPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHN--GVRIG----NM---DL---NELETPNINID----G--GLLEITN 148 (626)
Q Consensus 87 ~~~~~~v~~g~~~~l~C~~~~~p~p~~~i~W~~~--~~~~~----~~---~~---~~~~~~~~~~~----~--~~l~i~~ 148 (626)
.|....+.+|++++|.|...+...-.-.+.|+|- |+... .. .. ......|+... . ..|+|.+
T Consensus 3 ~~~~~~v~~G~~vtL~C~~~~~~~~~~~~~WYkQ~~g~~p~~l~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~I~~ 82 (117)
T cd04981 3 ESGPGLVKPGQSLKLSCKASGFTFTSYGVNWVRQAPGKGLEWIGFINPGGGETYYADSVKGRFTITRDTSKSTVYLQLNS 82 (117)
T ss_pred cCCCeEEcCCCCEEEEEEEeCCCcccceEEEEEECCCCCcEEEEEEecCCCceEeCcccCCcEEEEEEccCCEEEEEECC
Confidence 4677889999999999987654311124689872 22210 00 00 00112344331 1 2699999
Q ss_pred cCCCCCEeEEEEEEe
Q psy12061 149 ASFADAGEYECVVKS 163 (626)
Q Consensus 149 ~~~~d~g~Y~C~a~n 163 (626)
++.+|+|.|.|.+..
T Consensus 83 ~~~~Dsa~YyCa~~~ 97 (117)
T cd04981 83 LTPEDTAVYYCARGL 97 (117)
T ss_pred CCHHHCEEEEEEEEc
Confidence 999999999998764
No 365
>KOG4152|consensus
Probab=97.30 E-value=0.0017 Score=61.56 Aligned_cols=124 Identities=20% Similarity=0.299 Sum_probs=79.7
Q ss_pred eCCCcceeEEEEEEEEecCCCCCCCCccEEEEcc-CCCCCCCCCceEEEeeecceEEEEeeeccccccccceeeEEEEEE
Q psy12061 353 IPSEFYYTEYEVKVQAINDVGPGPESEVVTIFSA-EDMPQVAPQGVFSRGFNSTAINVTWNPIELIRENIRGRLIGHRIK 431 (626)
Q Consensus 353 ~~~L~p~~~Y~~~v~a~n~~g~~~~s~~~~~~t~-~~~p~~~p~~~~~~~~~~~si~l~W~~~~~~~~~~~~~i~~Y~v~ 431 (626)
-..|.+|+.|.|+|.|.|..|.+++|....+.|- +..|. +|..++.. .+-..+.+.|++|...+ .|.|..|..+
T Consensus 651 k~~lv~Gq~yrfrV~aIng~G~gp~s~i~~~kTc~pG~P~-apS~~ri~-k~~eGi~l~weppt~p~---sg~Iieys~y 725 (830)
T KOG4152|consen 651 KTSLVTGQAYRFRVTAINGKGPGPASTILKLKTCAPGKPT-APSGARIK-KTIEGISLVWEPPTKPG---SGTIIEYSPY 725 (830)
T ss_pred ccccccccceeeeeeeeeccCCCchhhheeeeeccCCCCC-Cccccccc-ccccceeecccCCCCCC---CcceEEeehh
Confidence 3468899999999999999999999999887764 45555 77777665 45567999999998664 2778888766
Q ss_pred EEecC-----CCccceEEEEe---------cCccceEEEeCCccCceEEEEEEEeeCCCCCCCC
Q psy12061 432 YWKED-----NPEETAVYYLS---------RTTRNWALIVGLQPDTKYYVKVMAYNNAGEGPES 481 (626)
Q Consensus 432 ~~~~~-----~~~~~~~~~~~---------~~~~~~~~i~~L~p~t~Y~v~V~a~~~~g~s~~s 481 (626)
.--.. ........... ...+.-..+.+...+-.-.|+|.|.|..|.|+..
T Consensus 726 lAi~tq~~~~~~sql~fmr~ycg~~t~c~vt~g~l~tA~~d~t~~paivfri~aknekGyGpat 789 (830)
T KOG4152|consen 726 LAIITQAGATGVSQLPFMRSYCGIITTCVVTSGKLITAVPDITTGPAIVFRIVAKNEKGYGPAT 789 (830)
T ss_pred hHhhhhhhccCccccceeeeecccceeeEEecccceeeccccccCcceEEEEEecCCCCCCcce
Confidence 41111 11111111000 0001111123334455678999999999987754
No 366
>KOG0613|consensus
Probab=97.27 E-value=0.0082 Score=64.27 Aligned_cols=280 Identities=17% Similarity=0.144 Sum_probs=146.7
Q ss_pred CCCceeEeecCCcCeEEEEEeeCCCCCcccCcceEEEEEEecCCCcceeeeeeeecceeeEEEEeCCCcceeEEEEEEEE
Q psy12061 289 QAPSRIGGGGGKIGDLSISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETLKEYGNVGIAVVRIPSEFYYTEYEVKVQA 368 (626)
Q Consensus 289 ~~p~~~~~~~~~~~~v~l~W~~~~~~~~~~~~~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~p~~~Y~~~v~a 368 (626)
.+|.+-.........+...|..+ ..+.......|.|+.+..+...|.........+.. +.... |.+++++
T Consensus 141 ~~~~~~~sv~~~~~~v~~~~~~~-~~d~~~k~~~~iie~~~~g~s~~~~~l~~~~~~s~-----~~~a~----~e~~v~~ 210 (1205)
T KOG0613|consen 141 PPPSNRESVLVHRARVLPAWRPP-REDGGRKREEYIIERRQAGRSPWLKRLTQPTDDST-----DTDAH----YESRVRA 210 (1205)
T ss_pred CCCCCccceeecCceecccccCC-ccCccceeecceEEEEeccCCCcccccccccCCcc-----eeccc----cceeEEE
Confidence 34444444444556777888873 55666778889999998887766643332211111 11222 4455555
Q ss_pred ecCCCCCCCCccEEEEccCCCCCCCCCceEEEeeecceEEEEeeeccccccccceeeEEEEEEEEecCCCccceEEEEec
Q psy12061 369 INDVGPGPESEVVTIFSAEDMPQVAPQGVFSRGFNSTAINVTWNPIELIRENIRGRLIGHRIKYWKEDNPEETAVYYLSR 448 (626)
Q Consensus 369 ~n~~g~~~~s~~~~~~t~~~~p~~~p~~~~~~~~~~~si~l~W~~~~~~~~~~~~~i~~Y~v~~~~~~~~~~~~~~~~~~ 448 (626)
+-..|....-......-....|...|..-.........+.+.|..+..+. ...+.+|.+......+...........
T Consensus 211 v~s~gqp~~~~~~~~~g~~i~~~~~~~~s~t~e~s~~~i~~~l~~~~G~~---~~~~~~~l~e~~~~~~~~t~~i~~~~~ 287 (1205)
T KOG0613|consen 211 VVSAGQPEPLERWEILGELIAPGSAPSMSVTLEASDRKIQLTLRAPRGPY---SAHILGYLIEQRKHKGGNTKTIQNDGP 287 (1205)
T ss_pred EEecCCCccchhhhhcccccCCCCccccccccchhheeeeEEeecCCCch---HHHHhcchhhhcccCCCccccccccCC
Confidence 54444433221111111111222223222222233445677776554321 134555655544322211111111112
Q ss_pred CccceEEEeCCccCceEEEEEEEeeCCCCC---CCCccEEEeecCCCCCCCCceEEEeeeCCCEEEEEEeecCCCCCCCc
Q psy12061 449 TTRNWALIVGLQPDTKYYVKVMAYNNAGEG---PESERYLERTYRKAPQKPPSAVHIKGINPTTVHVTWRYVSPSFEEEP 525 (626)
Q Consensus 449 ~~~~~~~i~~L~p~t~Y~v~V~a~~~~g~s---~~s~~~~~~t~~~~p~~~p~~l~~~~~~~~~~~l~W~~~~~~~~~~~ 525 (626)
....+++...-.++..|.+.+...-..|.+ +.+....+.+....|...+.++.+...+.+.+.+.|.- +-......
T Consensus 288 ~~~~s~t~~~~~~~~q~~~~v~~~~~i~~~~~~p~~~~~aaa~~~~~~v~~~~~~~v~a~d~~~v~m~~~~-~~~~~p~~ 366 (1205)
T KOG0613|consen 288 EPELSWTVADKRQGCQDRFKVTEEAPIGKGKPGPESLQAAAARPPEVPVGLVRNLSVTARDNTLVEMPTAL-SGTQKPDE 366 (1205)
T ss_pred ccccceeeecccCCcccceeeeEEeeccccccCchhhhhhccCCccccccccccceeccccCcceeecccc-cCCcCCch
Confidence 222335555556778888888887776654 34444445555566666777777887788899999973 11111222
Q ss_pred eeeEEEEEEEeccCCccccceeeecCccceEEecCCCCCceEEEEEEEEecCCCCCCCC
Q psy12061 526 IIGYKVRVWEVDQDMSRANDTIIPVGNTLDADIVDLSPGKRYHMRVLAFSNGGDGRMSS 584 (626)
Q Consensus 526 i~~Y~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~p~~~Y~~~V~a~~~~G~g~~s~ 584 (626)
+.+|.+.-........ ..........+.+.+.++.++..|..++.|.|..|......
T Consensus 367 ~~~~~~~~~~~~~~~~--~~~~~~~~ts~~~~~~~~~~~e~~~~~~~a~n~~g~~~~~~ 423 (1205)
T KOG0613|consen 367 AQGYHGEEVSSESLGA--LPCPVGTVTSHTYTIKDAGPGEGYFTRVPAVNKGGTEQTIA 423 (1205)
T ss_pred heeecccccccccccc--cccccccccCcchhhhhcCcccccccccceeccCCcccccc
Confidence 4445543211111100 11112223456677889999999999999999999766443
No 367
>cd07692 Ig_CD3_epsilon Immunoglobulin (Ig)-like domain of CD3 epsilon chain. Ig_CD3_epsilon; immunoglobulin (Ig)-like domain of CD3 epsilon chain. CD3 is a T cell surface receptor that is associated with alpha/beta T cell receptors (TCRs). The CD3 complex consists of one gamma, one delta, two epsilon, and two zeta chains. The CD3 subunits form heterodimers as gamma/epsilon, delta/epsilon, and zeta/zeta. The gamma, delta, and epsilon chains each contain an extracellular Ig domain, whereas the extracellular domains of the zeta chains are very small and have unknown structure. The CD3 domain participates in intracellular signalling once the TCR has bound an MHC/antigen complex.
Probab=97.27 E-value=0.0011 Score=44.00 Aligned_cols=52 Identities=13% Similarity=0.289 Sum_probs=36.4
Q ss_pred ecCCcEEEEEEecccCCcceeEEEeeCCEEeccccCCccCCCeeEecCCeEEEeecCCCCCEeEEEEEEeC
Q psy12061 94 AAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEITNASFADAGEYECVVKST 164 (626)
Q Consensus 94 ~~g~~~~l~C~~~~~p~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~a~n~ 164 (626)
..|.+|+|.|..... .+.|.+|+..+.. .+..+.+.+-. ++.|.|+|.+.+.
T Consensus 5 isGTtVtlTCP~~~~-----~i~W~~n~~~~~g-------------~~~~~~~~~~~-e~~G~Y~C~~~~~ 56 (65)
T cd07692 5 ISGTTVTVTCPLSGD-----DIKWKKNDQVSQG-------------SDEKYLSLNHF-SSSGYYHCTADNA 56 (65)
T ss_pred EeccEEEEECCCCCC-----CceEEeCCccCCC-------------CCceEEeeccC-CCCceEEEEeCCC
Confidence 469999999975533 2589999966543 22344455555 8899999998643
No 368
>PF09294 Interfer-bind: Interferon-alpha/beta receptor, fibronectin type III; InterPro: IPR015373 Members of this family adopt a secondary structure consisting of seven beta-strands arranged in an immunoglobulin-like beta-sandwich, in a Greek-key topology. They are required for binding to interferon-alpha []. ; PDB: 1A21_A 3LQM_B 3ELA_T 1AHW_C 2A2Q_T 1TFH_B 1FAK_T 1WSS_T 1W2K_T 2FIR_T ....
Probab=97.26 E-value=0.0016 Score=50.22 Aligned_cols=86 Identities=23% Similarity=0.328 Sum_probs=53.4
Q ss_pred CCCceEEEeeecceEEEEeeecccc----cc-----ccceeeEEEEEEEEecCCCccceEEEEecCccceEEEeCCccCc
Q psy12061 393 APQGVFSRGFNSTAINVTWNPIELI----RE-----NIRGRLIGHRIKYWKEDNPEETAVYYLSRTTRNWALIVGLQPDT 463 (626)
Q Consensus 393 ~p~~~~~~~~~~~si~l~W~~~~~~----~~-----~~~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t 463 (626)
|| .+.+ ....+++.|.+.+|... .. ...+ -..|.|.||+....... .........+.|.+|.|++
T Consensus 5 PP-~v~v-~~~~~~l~V~i~~P~~~~~~~~~~~~l~~~~~-~~~Y~v~~~~~~~~~~~---~~~~~~~~~~~l~~L~p~t 78 (106)
T PF09294_consen 5 PP-SVNV-SSCGGSLHVTIKPPMTPLRAGGKNSSLRDIYP-SLSYNVSYWKNGSNEKK---KEIETKNSSVTLSDLKPGT 78 (106)
T ss_dssp SS-EEEE-EEETTEEEEEEEESEEEEECSSSEEEHHHHHG-G-EEEEEEEETTTSCEE---EEEESSSEEEEEES--TTS
T ss_pred CC-EEEE-EECCCEEEEEEECCCcccccCCCCCcHHHhCC-CeEEEEEEEeCCCccce---EEEeecCCEEEEeCCCCCC
Confidence 55 4777 57788999999988621 00 0011 24699999998887222 1223444557899999999
Q ss_pred eEEEEEEEeeCC--CCCCCCccE
Q psy12061 464 KYYVKVMAYNNA--GEGPESERY 484 (626)
Q Consensus 464 ~Y~v~V~a~~~~--g~s~~s~~~ 484 (626)
.|-|+|+|.... ..|.+|...
T Consensus 79 ~YCv~V~~~~~~~~~~s~~S~~~ 101 (106)
T PF09294_consen 79 NYCVSVQAFSPSQNKNSQPSEPQ 101 (106)
T ss_dssp EEEEEEEEEECSSTEEEEEBSEE
T ss_pred CEEEEEEEEeccCCCcCCCCCCE
Confidence 999999994332 234555544
No 369
>cd07696 IgC_CH3 CH3 domain (third constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH3: The third immunoglobulin constant domain (IgC) of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=97.26 E-value=0.0018 Score=48.32 Aligned_cols=63 Identities=14% Similarity=0.249 Sum_probs=39.0
Q ss_pred CCceEEEEeeeCCC--CCC-eeEEEeCCEEc-cCC-CcEEEccCCc------EEEccCCCCCCEEEEEEEEcCC
Q psy12061 4 EGGNVTIFCNPEAA--PKP-KFVWKKDGNII-GSG-GRRKIFENGN------LLISPVSRDDSGIYSCTATNVH 66 (626)
Q Consensus 4 ~G~~~~l~C~~~g~--p~p-~i~W~~~~~~i-~~~-~~~~~~~~g~------L~i~~v~~~d~G~Y~C~a~n~~ 66 (626)
.|+.++|.|.+.|. |.. .|+|.|||... ... .......+|+ |.+..-...+.-.|.|.+....
T Consensus 13 ~~~~~tLtC~v~gf~yP~~i~v~W~r~~~~~~~~~~~~~~~~~dgty~~~s~l~v~~~~w~~g~~ysC~V~H~~ 86 (96)
T cd07696 13 LTKSVKLTCLVTNLTSPEGVNVTWTRGSGEPVKASIQPPESHNNATLSVTSTLNVSTDDWISGDTFQCKVTHPD 86 (96)
T ss_pred cCCCeEEEEEEeCCCCCCCcEEEEEECCeEeeeEEecccccCCCCCEEEEEEEEeCHHHccCCCcEEEEEECCC
Confidence 47899999999998 554 89999987433 211 1112223443 4444333334457999998653
No 370
>PF09294 Interfer-bind: Interferon-alpha/beta receptor, fibronectin type III; InterPro: IPR015373 Members of this family adopt a secondary structure consisting of seven beta-strands arranged in an immunoglobulin-like beta-sandwich, in a Greek-key topology. They are required for binding to interferon-alpha []. ; PDB: 1A21_A 3LQM_B 3ELA_T 1AHW_C 2A2Q_T 1TFH_B 1FAK_T 1WSS_T 1W2K_T 2FIR_T ....
Probab=97.22 E-value=0.002 Score=49.74 Aligned_cols=90 Identities=24% Similarity=0.395 Sum_probs=54.6
Q ss_pred CCCceEEEeeeCCCEEEEEEeecCC----CCCCC------ceeeEEEEEEEeccCCccccceeeecCccceEEecCCCCC
Q psy12061 495 KPPSAVHIKGINPTTVHVTWRYVSP----SFEEE------PIIGYKVRVWEVDQDMSRANDTIIPVGNTLDADIVDLSPG 564 (626)
Q Consensus 495 ~~p~~l~~~~~~~~~~~l~W~~~~~----~~~~~------~i~~Y~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~p~ 564 (626)
+||. +.+ ....+.+.|.+.+|.. ...+. .-..|.|.||..... ............+.|.+|.|+
T Consensus 4 gPP~-v~v-~~~~~~l~V~i~~P~~~~~~~~~~~~l~~~~~~~~Y~v~~~~~~~~----~~~~~~~~~~~~~~l~~L~p~ 77 (106)
T PF09294_consen 4 GPPS-VNV-SSCGGSLHVTIKPPMTPLRAGGKNSSLRDIYPSLSYNVSYWKNGSN----EKKKEIETKNSSVTLSDLKPG 77 (106)
T ss_dssp -SSE-EEE-EEETTEEEEEEEESEEEEECSSSEEEHHHHHGG-EEEEEEEETTTS----CEEEEEESSSEEEEEES--TT
T ss_pred cCCE-EEE-EECCCEEEEEEECCCcccccCCCCCcHHHhCCCeEEEEEEEeCCCc----cceEEEeecCCEEEEeCCCCC
Confidence 3564 777 4677899999995320 01111 113599999887665 223344556667799999999
Q ss_pred ceEEEEEEEEecC--CCCCCCCCcEEEee
Q psy12061 565 KRYHMRVLAFSNG--GDGRMSSPAITFQM 591 (626)
Q Consensus 565 ~~Y~~~V~a~~~~--G~g~~s~~~~~~~~ 591 (626)
+.|-|+|+|.... ..|.+|.+ .+.++
T Consensus 78 t~YCv~V~~~~~~~~~~s~~S~~-~C~~t 105 (106)
T PF09294_consen 78 TNYCVSVQAFSPSQNKNSQPSEP-QCITT 105 (106)
T ss_dssp SEEEEEEEEEECSSTEEEEEBSE-EEEE-
T ss_pred CCEEEEEEEEeccCCCcCCCCCC-EeEeC
Confidence 9999999994332 35666643 44443
No 371
>cd05720 Ig_CD8_alpha Immunoglobulin (Ig) like domain of CD8 alpha chain. Ig_CD8_alpha: immunoglobulin (Ig)-like domain in CD8 alpha. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alphaalpha or alphabeta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a v-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain. The Ig domain of CD8 alpha binds to antibodies.
Probab=97.21 E-value=0.00069 Score=51.86 Aligned_cols=70 Identities=19% Similarity=0.326 Sum_probs=43.7
Q ss_pred EEecCCcEEEEEEecccCCcceeEEEeeC--C--EEe---c---cc-cC----CccCCCeeEe----cCCeEEEeecCCC
Q psy12061 92 TIAAHRNLQLRCSAHTEELLDVAYIWTHN--G--VRI---G---NM-DL----NELETPNINI----DGGLLEITNASFA 152 (626)
Q Consensus 92 ~v~~g~~~~l~C~~~~~p~p~~~i~W~~~--~--~~~---~---~~-~~----~~~~~~~~~~----~~~~l~i~~~~~~ 152 (626)
.+.+|++++|.|........ .+.|+|- | ... . .. .. ......++.. ....|+|.+++.+
T Consensus 2 ~v~~G~~vtL~C~~~~~~~~--~v~Wyrq~~g~~~~~~~l~~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~L~I~~~~~s 79 (104)
T cd05720 2 DAELGQKVELKCEVLNSSPT--GCSWLFQPPGSAPQPTFLVYLSGSSKITWDEEELSSKRFSGSRSSNSFVLTLKNFQKE 79 (104)
T ss_pred cccCCCeEEEEEEecCCCCC--cEEEEEeCCCCCCCCEEEEEEeCCCCeeeccccCCCceEEEEecCCEEEEEECCCCHH
Confidence 36789999999998655332 4689873 3 111 1 00 00 0001234432 2347999999999
Q ss_pred CCEeEEEEEEe
Q psy12061 153 DAGEYECVVKS 163 (626)
Q Consensus 153 d~g~Y~C~a~n 163 (626)
|+|.|.|.+.+
T Consensus 80 DsgtY~Ca~~~ 90 (104)
T cd05720 80 NEGYYFCSVAS 90 (104)
T ss_pred HCEEEEEEEcc
Confidence 99999998753
No 372
>cd05721 IgV_CTLA-4 Immunoglobulin (Ig) domain of cytotoxic T lymphocyte-associated antigen 4 (CTLA-4). IgV_CTLA-4: domain similar to the variable(v)-type immunoglobulin (Ig) domain found in cytotoxic T lymphocyte-associated antigen 4 (CTLA-4). CTLA-4 is involved in the regulation of T cell response, acting as an inhibitor of intracellular signalling. CTLA-4 is similar to CD28, a T cell co-receptor protein that recognizes the B7 proteins (CD80 and CD86). CD28 binding of the B7 proteins occurs after the presentation of antigen to the T cell receptor (TCR) via the peptide-MHC complex on the surface of an antigen presenting cell (APC). CTLA-4 also binds the B7 molecules with a higher affinity than does CD28. The B7/CTLA-4 interaction generates inhibitory signals down-regulating the response, and may prevent T cell activation by weak TCR signals. CD28 and CTLA-4 then elicit opposing signals in the regulation of T cell responsiveness and homeostasis. T cell activation leads to increased
Probab=97.19 E-value=0.0015 Score=49.38 Aligned_cols=61 Identities=16% Similarity=0.179 Sum_probs=42.9
Q ss_pred CCCCceEEEEeeeCCCCC---CeeEEEe--CCE-Ec------------cCCCcEEEccCC-----cEEEccCCCCCCEEE
Q psy12061 2 AGEGGNVTIFCNPEAAPK---PKFVWKK--DGN-II------------GSGGRRKIFENG-----NLLISPVSRDDSGIY 58 (626)
Q Consensus 2 ~~~G~~~~l~C~~~g~p~---p~i~W~~--~~~-~i------------~~~~~~~~~~~g-----~L~i~~v~~~d~G~Y 58 (626)
+..|+.++|.|.++|.-. -.+.|.| +|. +. ...+|..+..+. +|.|.+++.+|++.|
T Consensus 10 v~p~~sv~LsC~~sg~~~s~e~~~~wvRq~pg~lE~c~~~~~~g~~~~~~~~r~tcs~~~s~ntv~L~l~~L~a~DTa~Y 89 (115)
T cd05721 10 ASSNGAASLVCEYTYNGFSKEFRASLLKGADSAVEVCAVTGNMSNQLQTSLDGFNCDGTLGNEQVNFTLQNLRANQTDIY 89 (115)
T ss_pred EcCCCCEEEEEEecCCccccEEEEEEEEeCCCCcEEEEEEeCCCccccccCCCeEEeEeCCCCEEEEEEcCCCHHHCeEE
Confidence 578999999999988633 3689998 331 11 012333333222 599999999999999
Q ss_pred EEEE
Q psy12061 59 SCTA 62 (626)
Q Consensus 59 ~C~a 62 (626)
.|..
T Consensus 90 ~Ca~ 93 (115)
T cd05721 90 FCKI 93 (115)
T ss_pred EEEe
Confidence 9986
No 373
>cd05769 IgC_TCR_beta T cell receptor (TCR) beta chain constant immunoglobulin domain. IgC_TCR_beta: Constant domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the beta chain. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The antigen binding site is formed by the variable domains of the alpha and beta chains, located at the N-terminus of each chain. Alpha/beta TCRs recognize antigens differently from gamma/delta TCRs.
Probab=97.18 E-value=0.002 Score=49.76 Aligned_cols=66 Identities=21% Similarity=0.419 Sum_probs=44.2
Q ss_pred CCceEEEEeeeCCC-CCC-eeEEEeCCEEccCCCc---EEEccC-C------cEEEccCCCCC-CEEEEEEEEcCCCCc
Q psy12061 4 EGGNVTIFCNPEAA-PKP-KFVWKKDGNIIGSGGR---RKIFEN-G------NLLISPVSRDD-SGIYSCTATNVHGMD 69 (626)
Q Consensus 4 ~G~~~~l~C~~~g~-p~p-~i~W~~~~~~i~~~~~---~~~~~~-g------~L~i~~v~~~d-~G~Y~C~a~n~~g~~ 69 (626)
+++.++|.|.+.|. |.. +|+|+|||..+..+.. .....+ | .|.|..-...| ...|.|.+.......
T Consensus 17 ~~~~~tL~Cla~gFyP~~I~V~W~kng~~l~~g~~~~~~~~~~~~gTYs~~S~L~v~~~~w~~~~~~ytC~V~H~g~~~ 95 (115)
T cd05769 17 NKRKATLVCLATGFYPDHVSLSWKVNGKEVTDGVATDPQALRENTSTYSISSRLRVSATEWFNPRNTFTCIVQFYGGTD 95 (115)
T ss_pred cCCCcEEEEEEEeEeCCCcEEEEEECCEECCCCcccccceecCCCCeEEEEEEEEEChHHhccCCCeEEEEEEEeCCcc
Confidence 46779999999996 664 9999999999864321 122222 3 36666544434 568999998664443
No 374
>KOG1480|consensus
Probab=97.16 E-value=0.0002 Score=71.19 Aligned_cols=78 Identities=29% Similarity=0.472 Sum_probs=64.6
Q ss_pred CCCCceEEEEeee-CCCCCCeeEEEeCCEEccCCCcEEEccCCcEEEccCCCCCCEEEEEEEEcCCCCcee-eEEEEEEe
Q psy12061 2 AGEGGNVTIFCNP-EAAPKPKFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTATNVHGMDES-KGRLIVLH 79 (626)
Q Consensus 2 ~~~G~~~~l~C~~-~g~p~p~i~W~~~~~~i~~~~~~~~~~~g~L~i~~v~~~d~G~Y~C~a~n~~g~~~~-~~~l~v~~ 79 (626)
|.++..++|.|.. .+.|...++|+|++..++.+.......++.|+|..+.+.|.|+|+|+|.|..+.... .+.+.|+.
T Consensus 141 V~~~s~~~l~cr~pe~~paae~~w~k~e~~~~pd~n~~~~~d~~li~~~arlsd~~nytc~a~ni~~~r~~~~~~v~vyv 220 (909)
T KOG1480|consen 141 VQEETTLQLPCRPPEGDPKAEVEWLKNEVVIDPDANVIRASDHNLIISQARLSDSGNYTCEATNIVAKRKSDPATVQVYV 220 (909)
T ss_pred ecccccccccccCcccchhhhhhccccCCCCCccccchhhhcCCccccchhhhhcccceeeeehhhccccccceEEEEEE
Confidence 4567788888886 778999999999999999877777788899999999999999999999998887443 34555543
No 375
>cd07696 IgC_CH3 CH3 domain (third constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH3: The third immunoglobulin constant domain (IgC) of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=97.15 E-value=0.0016 Score=48.59 Aligned_cols=38 Identities=16% Similarity=0.264 Sum_probs=30.3
Q ss_pred CCCceEEecCCcEEEEEEeccc-CCcceeEEEeeCCEEe
Q psy12061 87 LPPKITIAAHRNLQLRCSAHTE-ELLDVAYIWTHNGVRI 124 (626)
Q Consensus 87 ~~~~~~v~~g~~~~l~C~~~~~-p~p~~~i~W~~~~~~~ 124 (626)
+|....+..|+.++|.|.+.+- -++.+.++|+||+...
T Consensus 5 pPs~~~l~~~~~~tLtC~v~gf~yP~~i~v~W~r~~~~~ 43 (96)
T cd07696 5 PPSPKQLLLTKSVKLTCLVTNLTSPEGVNVTWTRGSGEP 43 (96)
T ss_pred CcCHHHhccCCCeEEEEEEeCCCCCCCcEEEEEECCeEe
Confidence 4455556779999999999998 5668999999997543
No 376
>cd04986 IgC_CH2 CH2 domain (second constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH2: The second immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=97.14 E-value=0.0011 Score=49.29 Aligned_cols=43 Identities=21% Similarity=0.323 Sum_probs=31.6
Q ss_pred CceeeeCCCceEEecCCcEEEEEEecccC-CcceeEEEeeCCEE
Q psy12061 81 PSYYEQLPPKITIAAHRNLQLRCSAHTEE-LLDVAYIWTHNGVR 123 (626)
Q Consensus 81 p~~~~~~~~~~~v~~g~~~~l~C~~~~~p-~p~~~i~W~~~~~~ 123 (626)
|.....+|.......+..++|.|.+.+-- +..+.+.|.++|..
T Consensus 4 PsV~l~pPs~e~l~~~~~atLtClV~~f~~P~~i~V~W~~~g~~ 47 (99)
T cd04986 4 PSLSLQRPALEDLLLGSSASLTCTLSGLRDPEGAVFTWTPSGGK 47 (99)
T ss_pred CEEEEECcChHHhCcCCccEEEEEEeccCCCCCeEEEEEECCcc
Confidence 33434445555566789999999999944 45689999999876
No 377
>cd05770 IgC_beta2m Class I major histocompatibility complex (MHC) beta2-microglobulin. IgC_beta2m: Immunoglobulin-like domain in beta2-Microglobulin (beta2m). Beta2m is the non-covalently bound light chain of the human class I major histocompatibility complex (MHC-I). Beta2m is structured as a beta-sandwich domain composed of two facing beta-sheets (four stranded and three stranded), that is typical of the C-type immunoglobulin superfamily. This structure is stabilized by an intramolecular disulfide bridge connecting two Cys residues in the facing beta -sheets. In vivo, MHC-I continuously exposes beta2m on the cell surface, where it may be released to plasmatic fluids, transported to the kidneys, degraded and then excreted.
Probab=97.14 E-value=0.0014 Score=48.42 Aligned_cols=67 Identities=16% Similarity=0.148 Sum_probs=44.4
Q ss_pred ecCCcEEEEEEecccCCcceeEEEeeCCEEeccccCCccCCCeeEecCCeEEEe---ecCCCCCEeEEEEEEeC
Q psy12061 94 AAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEIT---NASFADAGEYECVVKST 164 (626)
Q Consensus 94 ~~g~~~~l~C~~~~~p~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~---~~~~~d~g~Y~C~a~n~ 164 (626)
..|...+|.|.+.+--++.|.++|+|||..+. ... . ..-....++++++. .+...+...|.|.+...
T Consensus 13 ~~g~~~~L~C~a~gFyP~~i~v~W~~dg~~~~-~~~-~--~~~~p~~d~tyq~~s~l~~~~~~~~~ysC~V~H~ 82 (93)
T cd05770 13 ENGKPNVLNCYVTGFHPPDIEIRLLKNGVKIP-KVE-Q--SDLSFSKDWTFYLLKSTEFTPTKGDEYACRVRHN 82 (93)
T ss_pred cCCCceEEEEEEEEEeCCCCEEEEEECCEECC-CcE-E--CcEEECCCCCEEEEEEEEECCCCCCeEEEEEEEC
Confidence 34677899999999666779999999999986 311 0 11122233444432 34566777899998764
No 378
>cd05767 IgC_MHC_II_alpha Class II major histocompatibility complex (MHC) alpha chain immunoglobulin domain. IgC_MHC_II_alpha: Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class II alpha chain. MHC class II molecules play a key role in the initiation of the antigen-specific immune reponse. In both humans and in mice these molecules have been shown to be expressed constitutively on the cell surface of professional antigen-presenting cells (APCs), for example on B-lymphocytes, monocytes, and macrophages. The expression of these molecules has been shown to be induced in nonprofessional APCs such as keratinocyctes, and they are expressed on the surface of activated human T cells and on T cells from other species. The MHC II molecules present antigenic peptides to CD4(+) T-lymphocytes. These peptides derive mostly from protelytic processing via the endocytic pathway, of antigens internalized by the APC. These peptides bind to the MHC class II molecules in the endosom
Probab=97.08 E-value=0.002 Score=47.74 Aligned_cols=66 Identities=17% Similarity=0.161 Sum_probs=40.0
Q ss_pred cCCcEEEEEEecccCCcceeEEEeeCCEEeccccC----CccCCCeeEecCCeEEEeecCCCCCEeEEEEEEeC
Q psy12061 95 AHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDL----NELETPNINIDGGLLEITNASFADAGEYECVVKST 164 (626)
Q Consensus 95 ~g~~~~l~C~~~~~p~p~~~i~W~~~~~~~~~~~~----~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~a~n~ 164 (626)
.|+..+|.|.+.|--+..|+++|.+||..+..... ....+..+.. ...|.+. ..+...|+|.+...
T Consensus 14 ~~~~~tL~C~a~gFyP~~I~v~W~~~g~~~~~~~~~~~~~~~~Dgty~~-~s~L~v~---~~~~~~ytC~V~H~ 83 (94)
T cd05767 14 LGEPNTLICFVDNFFPPVLNVTWLKNGVPVTDGVSETRYYPRQDLSFQK-FSYLNFT---PEEGDIYSCIVEHW 83 (94)
T ss_pred CCCCeEEEEEEEEEECCcCEEEEEECCeEccCceEEeeeEeCCCCcEEE-EEEEEEE---CCCCCeEEEEEEeC
Confidence 46668999999995556789999999998754210 0000111111 1233333 34556899988754
No 379
>cd05719 Ig2_PVR_like Second immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins. Ig2_PVR_like: domain similar to the second immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), these result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus
Probab=97.06 E-value=0.0025 Score=47.46 Aligned_cols=62 Identities=13% Similarity=0.203 Sum_probs=39.5
Q ss_pred ceEEEEeee-CCCCCCeeEEEeCCEEccCCCcEEEccCC------cEEEccCCCCCCEEEEEEEEcCCCC
Q psy12061 6 GNVTIFCNP-EAAPKPKFVWKKDGNIIGSGGRRKIFENG------NLLISPVSRDDSGIYSCTATNVHGM 68 (626)
Q Consensus 6 ~~~~l~C~~-~g~p~p~i~W~~~~~~i~~~~~~~~~~~g------~L~i~~v~~~d~G~Y~C~a~n~~g~ 68 (626)
....+.|.+ .|.|+++|+|+++.... .........+| .|.+.....+|...|+|.|.+....
T Consensus 16 ~~~va~C~s~~gkP~a~ItW~~~~~~~-~~~~~~~~~~g~~tv~S~l~~~p~~~d~G~~~tC~v~h~~l~ 84 (95)
T cd05719 16 PVTVATCVSANGKPPATISWETTLGGE-AETQSKENPNGTVTVTSEYRLVPSREANGKELTCVVSHPTLQ 84 (95)
T ss_pred ccEEEEEECCCCcCCCEEEEEeCCCCc-ceeEeecCCCCCEEEEEEEEEecCHHHCCCEEEEEEeCcccC
Confidence 567889999 56799999999972111 01111222333 3666555555666899999987544
No 380
>PHA02914 Immunoglobulin-like domain protein; Provisional
Probab=97.05 E-value=0.059 Score=49.77 Aligned_cols=124 Identities=15% Similarity=0.247 Sum_probs=73.5
Q ss_pred eEEecCCcEEEEEEecccCCcc-eeEEEeeCCEEeccc------------cCCccCCC--------eeEecCCeEEEeec
Q psy12061 91 ITIAAHRNLQLRCSAHTEELLD-VAYIWTHNGVRIGNM------------DLNELETP--------NINIDGGLLEITNA 149 (626)
Q Consensus 91 ~~v~~g~~~~l~C~~~~~p~p~-~~i~W~~~~~~~~~~------------~~~~~~~~--------~~~~~~~~l~i~~~ 149 (626)
+.+..|..+.|.|....-..-. -.+.|.--|-++.+. +.-....- ...+-.++|+|.++
T Consensus 274 ~~~~~g~~v~~~c~~s~~~~e~i~~~~w~~t~~~~~~~~g~~~~~~~v~~~~~~~~~~~i~~~~~~s~dlk~STLTIkka 353 (500)
T PHA02914 274 VMLEVGKRVDIECFFSMCGNENISNAKWIDTGFEIGPLIGTVKSKDIVEGDFAEDDDFMISAHANYSDDLKNSTLTIKKA 353 (500)
T ss_pred eEeccCcEEEEEEEEeecCCcccccceEEecCCcccceeEEEEecceeecccccCCceEEEEecccccchhhceEEeeeE
Confidence 4666799999999988622211 235798766665421 00000001 11123468999999
Q ss_pred CCCCCEeEEEEEEeCCCceEEEEEEEEeCCCCCCCceEEEEEeccceEEEEecCCCCCCcccEEEEEEee-cCCCCceEe
Q psy12061 150 SFADAGEYECVVKSTVGKISTKTTVIVEGPPGLPGGVQVVEVHKTSATIQWTDGATNGRPITHYKIIART-NWNSTWFNV 228 (626)
Q Consensus 150 ~~~d~g~Y~C~a~n~~g~~~~~~~l~v~~~P~~p~~~~~~~~~~~~~~l~W~~~~~~~~~~~~y~v~~~~-~~~~~w~~~ 228 (626)
.-+..|=|.|.|....-.....--|. -.+++-+.|..-.++...+.-|..++.. .....|...
T Consensus 354 ~I~N~GCY~~~a~~g~~~~ec~~Cl~----------------V~d~V~f~W~~e~~n~T~V~Cyv~sy~~kp~si~wkvn 417 (500)
T PHA02914 354 HINNAGCYEAQAFMGKFKEECRHCFK----------------VADHVFFKWNTEGDNETKVACYAAQYDMQPFSILWKSN 417 (500)
T ss_pred EEEcCCceEEEEecCcchhhhhhheE----------------eccEEEEEEEeccCceEEEEEEEEecccCCceeEEEEc
Confidence 99999999999976533322222222 2457888998554555566677777633 334566654
Q ss_pred ec
Q psy12061 229 SE 230 (626)
Q Consensus 229 ~~ 230 (626)
+.
T Consensus 418 GV 419 (500)
T PHA02914 418 GV 419 (500)
T ss_pred cE
Confidence 33
No 381
>cd07697 IgC_TCR_gamma T cell receptor (TCR) gamma chain constant immunoglobulin domain. IgC_TCR_gamma; immunoglobulin (Ig) constant (C) domain of the gamma chain of gamma-delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha-beta TCRs but a small subset contain gamma-delta TCRs. Alpha-beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma-delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma-delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds.
Probab=97.05 E-value=0.0025 Score=47.36 Aligned_cols=59 Identities=19% Similarity=0.259 Sum_probs=37.2
Q ss_pred CceEEEEeeeCCC-CCC-eeEEEeCCEEccCCCc--EEEccCC------cEEEccCCCCCCEEEEEEEEcC
Q psy12061 5 GGNVTIFCNPEAA-PKP-KFVWKKDGNIIGSGGR--RKIFENG------NLLISPVSRDDSGIYSCTATNV 65 (626)
Q Consensus 5 G~~~~l~C~~~g~-p~p-~i~W~~~~~~i~~~~~--~~~~~~g------~L~i~~v~~~d~G~Y~C~a~n~ 65 (626)
++.++|.|.+.|. |.. +++|+|||..+..+.. ..+..++ .|.|..-. ....|+|.+...
T Consensus 16 ~~~~tL~C~a~gFyP~~I~v~W~kng~~~~~~~~~~~~~~~~dty~~~S~L~vt~~~--~~~~ysC~V~H~ 84 (96)
T cd07697 16 QGQGIYLCLLENFFPDVIQVHWREGNSPSILGSQKSEKDKDNDVYSTTSWLTVTKDS--LGKKFRCIYKHE 84 (96)
T ss_pred CCCEEEEEEEEEEeCCCeEEEEEECCEECcCCeEeccEecCCCEEEEEEEEEECchh--CCCeEEEEEEEC
Confidence 5679999999995 654 8999999998754311 0111122 25444322 233599999863
No 382
>PF07654 C1-set: Immunoglobulin C1-set domain; InterPro: IPR003597 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents C1-set domains, which are classical Ig-like domains resembling the antibody constant domain. C1-set domains are found almost exclusively in molecules involved in the immune system, such as in immunoglobulin light and heavy chains, in the major histocompatibility complex (MHC) class I and II complex molecules [, ], and in various T-cell receptors.; PDB: 3BVN_D 3BXN_A 3PWV_E 3L9R_F 2XFX_B 1BMG_A 1K8I_A 3M1B_G 3M17_C 1EXU_A ....
Probab=96.98 E-value=0.0012 Score=48.08 Aligned_cols=66 Identities=21% Similarity=0.314 Sum_probs=44.1
Q ss_pred cCCcEEEEEEecccCCcceeEEEeeCCEEeccccCCccCCCeeEecCC------eEEEeecCCCCCEeEEEEEEeCCC
Q psy12061 95 AHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGG------LLEITNASFADAGEYECVVKSTVG 166 (626)
Q Consensus 95 ~g~~~~l~C~~~~~p~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~------~l~i~~~~~~d~g~Y~C~a~n~~g 166 (626)
.++.++|.|.+.+--+..|+|.|++||..+....... ......++ .|.+. ..+...|+|.+.....
T Consensus 7 ~~~~~~L~C~v~~f~P~~i~v~W~~~~~~~~~~~~~~---~~~~~~dgty~~~s~l~v~---~~~~~~ysC~V~H~~l 78 (83)
T PF07654_consen 7 LGGSVTLTCLVSGFYPKDITVTWLKNGKEVTEGVETT---PPPPNSDGTYSVTSSLTVT---WNSGDEYSCRVTHESL 78 (83)
T ss_dssp STSEEEEEEEEEEEBSSTEEEEEEETTEEETTTEEEE---EEEEETTSEEEEEEEEEEE---TTTTGGEEEEEEETTS
T ss_pred CCCCEEEEEEEEEEECCCcEEEEEeccceeeeeeeec---ccccccccceeeeEEEEec---CCCCCEEEEEEEECCC
Confidence 3899999999999666789999999999986542100 01101222 34444 4556689999986644
No 383
>KOG1480|consensus
Probab=96.94 E-value=0.00025 Score=70.52 Aligned_cols=158 Identities=21% Similarity=0.280 Sum_probs=95.3
Q ss_pred CCCCCceEEEEeeeCCCCCC----eeEEEeCCEEc---cCC---CcEEEccCCcEEEccCCCC-----CCEEEEEEEEcC
Q psy12061 1 YAGEGGNVTIFCNPEAAPKP----KFVWKKDGNII---GSG---GRRKIFENGNLLISPVSRD-----DSGIYSCTATNV 65 (626)
Q Consensus 1 ~~~~G~~~~l~C~~~g~p~p----~i~W~~~~~~i---~~~---~~~~~~~~g~L~i~~v~~~-----d~G~Y~C~a~n~ 65 (626)
|++.|..+.|.|.+...+.. .=.|..+.+.+ ..+ ++.... -.+.|..-+-+ +.-.-+|.|...
T Consensus 35 yii~~~p~~l~c~a~~a~~i~~kc~~~wv~~~~~~~~~~~d~tsg~~~~~--~si~Isr~~v~~~~~~~d~~cQc~a~~~ 112 (909)
T KOG1480|consen 35 YIIKNKPLRLQCKANPATQIRFKCNSEWVHQSRHEKLEGTDETSGLGVRE--VSIDISRQQVETSGGPEDYWCQCVAWSD 112 (909)
T ss_pred ceecCCCccceecCCcccccccccChhhhcCccceeeeccCcccceeEEe--eeeeeehhhhhcccCccceeeeeeeecC
Confidence 67889999999998655332 23344332211 110 111110 11333322222 333457788877
Q ss_pred CCCceee-EEEEEEeCCceeeeCCCceEEecCCcEEEEEEecc-cCCcceeEEEeeCCEEeccccCCccCCCeeEecCCe
Q psy12061 66 HGMDESK-GRLIVLHGPSYYEQLPPKITIAAHRNLQLRCSAHT-EELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGL 143 (626)
Q Consensus 66 ~g~~~~~-~~l~v~~~p~~~~~~~~~~~v~~g~~~~l~C~~~~-~p~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~ 143 (626)
.|...+. +.+.+.+.-....+.|....|..+....+.|...- .|. ..++|++++..+.... +-+......
T Consensus 113 ~g~~~s~~a~vr~ay~rk~f~~~p~~q~V~~~s~~~l~cr~pe~~pa--ae~~w~k~e~~~~pd~------n~~~~~d~~ 184 (909)
T KOG1480|consen 113 DGTVKSRKATVRIAYLRKHFEQSPVGQEVQEETTLQLPCRPPEGDPK--AEVEWLKNEVVIDPDA------NVIRASDHN 184 (909)
T ss_pred CCcchhhhHHHHHHHHHHhhccChhhheecccccccccccCcccchh--hhhhccccCCCCCccc------cchhhhcCC
Confidence 7743222 11111112223344567778899999999998653 433 4568999999887732 445557789
Q ss_pred EEEeecCCCCCEeEEEEEEeCCCce
Q psy12061 144 LEITNASFADAGEYECVVKSTVGKI 168 (626)
Q Consensus 144 l~i~~~~~~d~g~Y~C~a~n~~g~~ 168 (626)
|.+..+...|.|+|+|+|.|..+..
T Consensus 185 li~~~arlsd~~nytc~a~ni~~~r 209 (909)
T KOG1480|consen 185 LIISQARLSDSGNYTCEATNIVAKR 209 (909)
T ss_pred ccccchhhhhcccceeeeehhhccc
Confidence 9999999999999999999877753
No 384
>smart00406 IGv Immunoglobulin V-Type.
Probab=96.90 E-value=0.0012 Score=47.94 Aligned_cols=63 Identities=21% Similarity=0.364 Sum_probs=38.5
Q ss_pred cEEEEEEecccCCcceeEEEeeCCE--E---eccc-----cCCc-cCCCeeEec------CCeEEEeecCCCCCEeEEEE
Q psy12061 98 NLQLRCSAHTEELLDVAYIWTHNGV--R---IGNM-----DLNE-LETPNINID------GGLLEITNASFADAGEYECV 160 (626)
Q Consensus 98 ~~~l~C~~~~~p~p~~~i~W~~~~~--~---~~~~-----~~~~-~~~~~~~~~------~~~l~i~~~~~~d~g~Y~C~ 160 (626)
+++|.|.+.....+...+.|++... . +... .... ....|+... ...|+|.+++.+|+|.|.|.
T Consensus 1 ~v~l~C~~~~~~~~~~~v~W~~~~~~~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~ 80 (81)
T smart00406 1 SVTLSCKASGFTFSSYYVSWVRQPPGKGLEWLGYIGSSGSTYYQQSYKGRVTISKDTSKNDVSLTISNLRVEDTGTYYCA 80 (81)
T ss_pred CEEEEEEEeccccceeEEEEEEeCCCCCeEEEEEEcCCCcEEECcccCCcEEEEecCcCCEEEEEEcCCCHHHCEEEEEc
Confidence 4789999887665434678987432 1 1100 0000 112344321 24699999999999999996
No 385
>cd07691 Ig_CD3_gamma_delta Immunoglobulin (Ig)-like domain of CD3 gamma and delta chains. Ig_CD3_gamma_delta; immunoglobulin (Ig)-like domain of CD3 gamma and delta chains. CD3 is a T cell surface receptor that is associated with alpha/beta T cell receptors (TCRs). The CD3 complex consists of one gamma, one delta, two epsilon, and two zeta chains. The CD3 subunits form heterodimers as gamma/epsilon, delta/epsilon, and zeta/zeta. The gamma, delta, and epsilon chains each contain an extracellular Ig domain, whereas the extracellular domains of the zeta chains are very small and have unknown structure. The CD3 domain participates in intracellular signalling once the TCR has bound an MHC/antigen complex.
Probab=96.90 E-value=0.0023 Score=42.72 Aligned_cols=51 Identities=20% Similarity=0.450 Sum_probs=37.8
Q ss_pred ecCCcEEEEEEecccCCcceeEEEeeCCEEeccccCCccCCCeeEecCCeEEEeecCCCCCEeEEEEEEe
Q psy12061 94 AAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEITNASFADAGEYECVVKS 163 (626)
Q Consensus 94 ~~g~~~~l~C~~~~~p~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~a~n 163 (626)
...+.|.|.|... -+|.|++ |..+... .+..|.+-+......|.|+|.+.+
T Consensus 4 e~~~~V~L~C~~~------tsi~W~k-G~~~~~~------------~~~tlnLGs~~~DPRG~Y~C~~s~ 54 (69)
T cd07691 4 ESEGKVFLKCNGA------TNITWKK-GKEILEV------------SNTLLDLGSRINDPRGTYSCKESE 54 (69)
T ss_pred ecCceEEEEecCC------CcEEEec-Ccccccc------------cccEEeccCcccCCCcceEecCcc
Confidence 3456799999652 1468999 6665432 256788888888999999998876
No 386
>PHA03271 envelope glycoprotein C; Provisional
Probab=96.89 E-value=0.11 Score=48.55 Aligned_cols=81 Identities=16% Similarity=0.142 Sum_probs=56.2
Q ss_pred cEEEccCCCCCCEEEEEEEEcCCCCc--eeeEEEEEEe-CCceeeeCCCceEEecCCcEEEEEEecc-cCCcceeEEEee
Q psy12061 44 NLLISPVSRDDSGIYSCTATNVHGMD--ESKGRLIVLH-GPSYYEQLPPKITIAAHRNLQLRCSAHT-EELLDVAYIWTH 119 (626)
Q Consensus 44 ~L~i~~v~~~d~G~Y~C~a~n~~g~~--~~~~~l~v~~-~p~~~~~~~~~~~v~~g~~~~l~C~~~~-~p~p~~~i~W~~ 119 (626)
.|.|.+|...|+|.|+-...+..... .....+.+.+ +|.+...++ -+..|+...-.|.+.. .|+-.+.+.|++
T Consensus 208 ~v~I~svD~~t~Gy~~v~~~d~~N~~i~e~~~~~~v~~RPPsVsV~a~---PVL~Ge~YkAtC~vAnYYPP~SvrlrWf~ 284 (490)
T PHA03271 208 GVEIRNVDYADNGYIQVIMRDPFNRPLLDKHIYIRVCQRPASVDVLAP---PVLSGENYKASCIVRHFYPPGSVYVSWRQ 284 (490)
T ss_pred eEEEEEeecccceEEEEEecCCCCCccccceEEEEEEecCCCccccCC---ccccCCCceEEEEeeeecCCCceEEEEEe
Confidence 49999999999997765555544442 2334444444 443433322 3788999999999987 455568899999
Q ss_pred CCEEeccc
Q psy12061 120 NGVRIGNM 127 (626)
Q Consensus 120 ~~~~~~~~ 127 (626)
||.++...
T Consensus 285 nG~~V~~~ 292 (490)
T PHA03271 285 NGNIATPR 292 (490)
T ss_pred CCccccCc
Confidence 99998654
No 387
>cd07689 Ig2_VCAM-1 Second immunoglobulin (Ig)-like domain of vascular endothelial cell adhesion molecule-1 (VCAM-1, CD106) and intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins. Ig2_ VCAM-1_like: domain similar to the second immunoglobulin (Ig)-like domain of vascular endothelial cell adhesion molecule-1 (VCAM-1, CD106). During the inflammation process, these molecules recruit leukocytes onto the vascular endothelium before extravasation to the injured tissues. The interaction of VCAM-1 binding to the beta1 integrin very late antigen (VLA-4) expressed by lymphocytes and monocytes mediates the adhesion of leucocytes to blood vessel walls, and regulates migration across the endothelium. During metastasis, some circulating cancer cells extravasate to a secondary site by a similar process. VCAM-1 may be involved in organ targeted tumor metastasis and may also act as host receptors for viruses and parasites. VCAM-1 contains seven Ig domains.
Probab=96.88 E-value=0.0065 Score=44.53 Aligned_cols=72 Identities=10% Similarity=0.128 Sum_probs=45.0
Q ss_pred EecCCcEEEEEEeccc-CCcceeEEEeeCCEEeccccCCccCCCee-EecCCeEEEeecCCCCCE-eEEEEEEeCC
Q psy12061 93 IAAHRNLQLRCSAHTE-ELLDVAYIWTHNGVRIGNMDLNELETPNI-NIDGGLLEITNASFADAG-EYECVVKSTV 165 (626)
Q Consensus 93 v~~g~~~~l~C~~~~~-p~p~~~i~W~~~~~~~~~~~~~~~~~~~~-~~~~~~l~i~~~~~~d~g-~Y~C~a~n~~ 165 (626)
+.+|..+++.|.+.+. |...+++.|++....+....+.......- ......+.+.. +++|.| .|.|.|.-..
T Consensus 12 l~~G~~vtv~C~v~~v~P~~~l~v~LlkG~~~l~~~~f~~~~~~ks~~~~~~~vtftp-treD~g~~fsC~A~L~l 86 (99)
T cd07689 12 LEEGKPVTVKCEVPDVYPFDRLEIELLKGETLLPSKSFLEDMDKKSLETKSLEVTFTP-TIEDIGKVLVCRAKLHI 86 (99)
T ss_pred ccCCceEEEEEEecCcccCCceEEEEecCcceecccccccccccCCCCCcceeEEEec-chhhCCcEEEEEEEEee
Confidence 5899999999999874 44357889999877776543211100000 01223555555 467766 9999997443
No 388
>cd04985 IgC_CH1 CH1 domain (first constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH1: The first immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fab antigen-binding fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=96.86 E-value=0.0034 Score=46.75 Aligned_cols=42 Identities=17% Similarity=0.326 Sum_probs=30.3
Q ss_pred CceeeeCCCceEEecCCcEEEEEEecccCCcceeEEEeeCCEE
Q psy12061 81 PSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVR 123 (626)
Q Consensus 81 p~~~~~~~~~~~v~~g~~~~l~C~~~~~p~p~~~i~W~~~~~~ 123 (626)
|.++..+|.... ..++.++|.|.+.+--+..++++|+|||..
T Consensus 2 P~v~~l~~~~~~-~~~~~~~L~C~a~gFyP~~i~vtW~k~g~~ 43 (95)
T cd04985 2 PTVFPLVPCCSS-SSSDSVTLGCLATGFLPEPVTFTWNSGSNS 43 (95)
T ss_pred CeEEEeCCCccc-cCCCcEEEEEEEeeEECCCcEEEEeECCEE
Confidence 444444443333 256779999999996556799999999998
No 389
>PF08204 V-set_CD47: CD47 immunoglobulin-like domain; InterPro: IPR013270 This family represents the CD47 leukocyte antigen V-set like Ig domain [, ].; PDB: 2VSC_B 2JJS_D 2JJT_C.
Probab=96.85 E-value=0.0017 Score=50.45 Aligned_cols=76 Identities=21% Similarity=0.289 Sum_probs=46.3
Q ss_pred CCCCCceEEEEeeeCCC-----CCCeeEEEeCCEEcc--CC-CcEEE-----------ccCC--cEEEccCCCCCCEEEE
Q psy12061 1 YAGEGGNVTIFCNPEAA-----PKPKFVWKKDGNIIG--SG-GRRKI-----------FENG--NLLISPVSRDDSGIYS 59 (626)
Q Consensus 1 ~~~~G~~~~l~C~~~g~-----p~p~i~W~~~~~~i~--~~-~~~~~-----------~~~g--~L~i~~v~~~d~G~Y~ 59 (626)
|..-+++|.|.|.+... +.-.|+|.++|+.|- .+ ..... +..| +|.+...+.- .|.|+
T Consensus 23 ~t~CN~tV~IPC~v~n~~~~ni~~m~VkWk~~~~~If~~dg~~~~~~~~~f~sa~i~~l~kG~aSL~~~~~~a~-~GnYT 101 (130)
T PF08204_consen 23 YTVCNDTVVIPCFVNNLEANNISEMYVKWKFKNKDIFIFDGTNNKSTSDNFPSAKISELLKGNASLKMDKSDAV-EGNYT 101 (130)
T ss_dssp E-TT-SEEEE--BBSS---SSGGGEEEEEEETTEEEEEEETTTTEEEEGGGTT-BEGGGGGTB--EEEEHHHHH--EEEE
T ss_pred EEecCCCEEEEeEeccccccccceEEEEEEECCeEEEEEcCccceecccCccccchhHhhCCCEEEEEcchhcc-ccceE
Confidence 34567899999999763 234699999999873 11 11111 1123 4777775554 89999
Q ss_pred EEEEcCCCCceeeEEEEE
Q psy12061 60 CTATNVHGMDESKGRLIV 77 (626)
Q Consensus 60 C~a~n~~g~~~~~~~l~v 77 (626)
|.+.....+......|..
T Consensus 102 CeVt~~~~ege~~i~Lk~ 119 (130)
T PF08204_consen 102 CEVTELSREGETTIELKY 119 (130)
T ss_dssp EEEEETTEEEEEEEEEEE
T ss_pred EEEEecCCCceEEEEEEE
Confidence 999987776666666655
No 390
>PHA03273 envelope glycoprotein C; Provisional
Probab=96.84 E-value=0.12 Score=49.15 Aligned_cols=154 Identities=18% Similarity=0.299 Sum_probs=81.9
Q ss_pred CCCCceEEEEeeeCCC-CCC--eeEEEeCCEEccC-C---CcEEEccCC------cEEEccCCC-CCCEEEEEEEEc-CC
Q psy12061 2 AGEGGNVTIFCNPEAA-PKP--KFVWKKDGNIIGS-G---GRRKIFENG------NLLISPVSR-DDSGIYSCTATN-VH 66 (626)
Q Consensus 2 ~~~G~~~~l~C~~~g~-p~p--~i~W~~~~~~i~~-~---~~~~~~~~g------~L~i~~v~~-~d~G~Y~C~a~n-~~ 66 (626)
|-+|+...-.|.+... |+- .+.|++||.++.. . +......+| +|.+..... +..=..+|.+.= ..
T Consensus 247 vL~Ge~y~A~C~aa~YYPp~Sv~~rWf~dg~~V~~~~~~~~~~~~~~~gl~T~vStlt~~~~~~~~~PP~lrC~v~W~rd 326 (486)
T PHA03273 247 SLKGENYRAVCVVASYFPHSSVKLRWYKNAKEVDFTKYVTNASSVWVDGLITRISTLSIPVDPDEEYTPSLRCSIEWYRD 326 (486)
T ss_pred cccCCCceEEEEeeeecCCCceEEEEEeCCeeccccccceeeEEEecCCceEEEEEEeccCcccCCCCCCceEEEEEccC
Confidence 4589999999999775 442 8999999999973 2 223333344 244444322 233368998873 33
Q ss_pred CCceeeEEEEEEeCCceeeeCCCceEEecCCcEEEEEEecccCCcceeEEEeeCCE-EeccccCCccCCCeeEecCCeEE
Q psy12061 67 GMDESKGRLIVLHGPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGV-RIGNMDLNELETPNINIDGGLLE 145 (626)
Q Consensus 67 g~~~~~~~l~v~~~p~~~~~~~~~~~v~~g~~~~l~C~~~~~p~p~~~i~W~~~~~-~~~~~~~~~~~~~~~~~~~~~l~ 145 (626)
+...+. +.-...|.....|.-.+....| ...|++...|.-.+.+.|..++. +..... ....+-.....+...
T Consensus 327 ~vS~~R--fsAt~~P~Vy~~P~Is~~F~~G---~AVCtA~CVP~egV~l~W~v~D~~p~a~~~--~~~tG~C~~~PglvN 399 (486)
T PHA03273 327 EVSFAR--IAKAGTPSVFVAPTVSVTVEDG---DAVCTAKCVPSTGVFVSWSVNDHLPGVPSQ--DMTTGVCSSHPGLVN 399 (486)
T ss_pred Ccceee--ccccccCccccCCeEEEEEeCC---EEEEecccccCCCeeEEEEccCCCCCCccc--ccccccCCCCCCcee
Confidence 322222 1111223222211112223333 45688888886568899986652 211110 001111222334566
Q ss_pred Eee---cCCCCCE--eEEEEEEe
Q psy12061 146 ITN---ASFADAG--EYECVVKS 163 (626)
Q Consensus 146 i~~---~~~~d~g--~Y~C~a~n 163 (626)
|++ +...| | .|+|.+..
T Consensus 400 lrS~~pls~~d-gp~eYTCrl~G 421 (486)
T PHA03273 400 MQSRRPLSEEN-GEREYSCIIEG 421 (486)
T ss_pred eeccccccccC-CceeEEEEEee
Confidence 666 33333 5 89998864
No 391
>cd07704 Ig2_Nectin-3-4_like Second immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3), nectin-4 (poliovirus receptor related protein 4) and similar proteins. Ig2_Nectin-3-4_like: domain similar to the second immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3) and nectin-4 (poliovirus receptor related protein 4). Nectin-3 and nectin-4 belong to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectin-2 and nectin-3 localize at Sertoli-spermatid junctions where they form heterophilic trans-interactions between the cells that are essential for the formation and maintenance of the junctions and for spermatid development. Nect
Probab=96.83 E-value=0.0043 Score=45.83 Aligned_cols=65 Identities=15% Similarity=0.322 Sum_probs=42.4
Q ss_pred CCCCceEEE-Eeee-CCCCCCeeEEEeCCEEccCCCcEEEccCC------cEEEccCCCCCCEEEEEEEEcCCC
Q psy12061 2 AGEGGNVTI-FCNP-EAAPKPKFVWKKDGNIIGSGGRRKIFENG------NLLISPVSRDDSGIYSCTATNVHG 67 (626)
Q Consensus 2 ~~~G~~~~l-~C~~-~g~p~p~i~W~~~~~~i~~~~~~~~~~~g------~L~i~~v~~~d~G~Y~C~a~n~~g 67 (626)
+.+|+.+.+ .|.+ .|.|+++|+|+.+..... ........+| .|.+..-..+|.-.+.|.+....-
T Consensus 13 ~~~g~~~~vA~C~sa~gkPaa~IsW~~~~~G~~-~~~~~~~~ngT~TV~S~~~l~p~r~d~G~~vtC~V~H~al 85 (97)
T cd07704 13 IDGGNGTTLAACCAAEGRPAADVTWETNVYGTS-ESHSQEHPNGTTTVTSEYIWVPSRHANGHPLTCVVSHPAL 85 (97)
T ss_pred eecCcceeEEEEEccCCccCCEeEEeCCCCCcc-ceeeecCCCCCEEEEEEEEEEeCHHHCCcEEEEEEeCccc
Confidence 357888888 8887 556999999998743321 1222223344 366654555677789999987643
No 392
>PHA03273 envelope glycoprotein C; Provisional
Probab=96.81 E-value=0.028 Score=53.21 Aligned_cols=78 Identities=17% Similarity=0.216 Sum_probs=61.1
Q ss_pred EEEccCCCCCCEEEEEEEEcCCCCceeeEEEEE--EeCCceeeeCCCceEEecCCcEEEEEEecc-cCCcceeEEEeeCC
Q psy12061 45 LLISPVSRDDSGIYSCTATNVHGMDESKGRLIV--LHGPSYYEQLPPKITIAAHRNLQLRCSAHT-EELLDVAYIWTHNG 121 (626)
Q Consensus 45 L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~v--~~~p~~~~~~~~~~~v~~g~~~~l~C~~~~-~p~p~~~i~W~~~~ 121 (626)
|.|..+...++|.|.=...+..+.......+.| +.+|.+...++ -+..|+...-.|.+.. .|.-.+.+.|++||
T Consensus 200 LtI~sltaaTeGvYtWr~~~~n~t~~~~~~VtV~~yr~Psvsv~~~---PvL~Ge~y~A~C~aa~YYPp~Sv~~rWf~dg 276 (486)
T PHA03273 200 LTIKSVDWRTAGVYVWSLYAKNGTLVNSTSVTVSTYNAPLVDLSVH---PSLKGENYRAVCVVASYFPHSSVKLRWYKNA 276 (486)
T ss_pred eEEEecchhhceEEEEEEecCCCceeeeeEEEEEEecCCcccccCC---ccccCCCceEEEEeeeecCCCceEEEEEeCC
Confidence 999999999999999777666666555555555 66777644333 4789999999999887 45556889999999
Q ss_pred EEec
Q psy12061 122 VRIG 125 (626)
Q Consensus 122 ~~~~ 125 (626)
.++.
T Consensus 277 ~~V~ 280 (486)
T PHA03273 277 KEVD 280 (486)
T ss_pred eecc
Confidence 9998
No 393
>PF08205 C2-set_2: CD80-like C2-set immunoglobulin domain ; InterPro: IPR013162 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the C2-set type domains found in the T-cell antigen CD80, as well as in related proteins. CD80 (B7-1) is a glycoprotein expressed on antigen-presenting cells []. The shared ligands on CD80 and CD86 (B7-2) deliver the co-stimulatory signal through CD28 and CTLA-4 on T-cells, where CD28 augments the T-cell response and CTLA-4 attenuates it [].; PDB: 3S58_A 3O3U_N 3CJJ_A 3S59_A 2PF6_B 2PET_A 3ALP_A 3SKU_D 3U83_A 3U82_B ....
Probab=96.79 E-value=0.0043 Score=45.97 Aligned_cols=71 Identities=11% Similarity=0.118 Sum_probs=43.2
Q ss_pred CCcEEEEEEecc-cCCcceeEEEeeCCEEecccc--CCccCCCeeEecCCeEEEeecCCCCCEeEEEEEEeCCCce
Q psy12061 96 HRNLQLRCSAHT-EELLDVAYIWTHNGVRIGNMD--LNELETPNINIDGGLLEITNASFADAGEYECVVKSTVGKI 168 (626)
Q Consensus 96 g~~~~l~C~~~~-~p~p~~~i~W~~~~~~~~~~~--~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~a~n~~g~~ 168 (626)
|+.+.|.|.+.+ .|.| .|+|+.++..+.... .............+.|.+..-...+...++|.|.+..-..
T Consensus 14 ~~~~~~~C~s~~~~P~~--~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~S~l~~~~~~~~~~~~~~C~~~~~~~~~ 87 (89)
T PF08205_consen 14 GEEVTLTCSSSGGYPPP--QITWYLDGGPVVASNTTQSSSPDNGLFTVSSTLTLTPTREDHGKTLTCRASHPALSQ 87 (89)
T ss_dssp TEEEEEEEEEEEEBS-E--EEEEEETTCEECEEEEEEEEETTTTTEEEEEEEEEETTGGGTTEEEEEEEEETTCCE
T ss_pred ceEEEEEEEeCCeECCe--EEEEEECCCceeeeeeeeeeccCCCcceEEEEEEEEcChHHCCeEEEEEEECCccCC
Confidence 789999997665 5544 669999998882111 0000111111123466666555556779999999876543
No 394
>PF07354 Sp38: Zona-pellucida-binding protein (Sp38); InterPro: IPR010857 This family contains a number of zona-pellucida-binding proteins that seem to be restricted to mammals. These are sperm proteins that bind to the 90 kDa family of zona pellucida glycoproteins in a calcium-dependent manner []. These represent some of the specific molecules that mediate the first steps of gamete interaction, allowing fertilisation to occur [].; GO: 0007339 binding of sperm to zona pellucida, 0005576 extracellular region
Probab=96.78 E-value=0.0019 Score=56.03 Aligned_cols=48 Identities=25% Similarity=0.557 Sum_probs=42.9
Q ss_pred CCCeeEEEe-CCEEccCCCcEEEccCCcEEEccCCCCCCEEEEEEEEcC
Q psy12061 18 PKPKFVWKK-DGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTATNV 65 (626)
Q Consensus 18 p~p~i~W~~-~~~~i~~~~~~~~~~~g~L~i~~v~~~d~G~Y~C~a~n~ 65 (626)
..|.+.|.. +|+.|..++++.+...|.|.|.+...+++|.|+|..+-.
T Consensus 11 iDP~y~W~GP~g~~l~gn~~~nIT~TG~L~~~~F~esmSG~YTCtLsYk 59 (271)
T PF07354_consen 11 IDPTYLWTGPNGKPLSGNSYVNITETGKLMFKNFQESMSGSYTCTLSYK 59 (271)
T ss_pred CCCceEEECCCCcccCCCCeEEEccCceEEeeccccccCCceEEEEEEE
Confidence 578999998 677888788999999999999999999999999998743
No 395
>PHA03269 envelope glycoprotein C; Provisional
Probab=96.77 E-value=0.034 Score=52.82 Aligned_cols=80 Identities=16% Similarity=0.173 Sum_probs=59.9
Q ss_pred cEEEccCCCCCCEEEEEEEEcCC-CC--ceeeEEEEEEeCCceeeeCCCceEEecCCcEEEEEEecc-cCCcceeEEEee
Q psy12061 44 NLLISPVSRDDSGIYSCTATNVH-GM--DESKGRLIVLHGPSYYEQLPPKITIAAHRNLQLRCSAHT-EELLDVAYIWTH 119 (626)
Q Consensus 44 ~L~i~~v~~~d~G~Y~C~a~n~~-g~--~~~~~~l~v~~~p~~~~~~~~~~~v~~g~~~~l~C~~~~-~p~p~~~i~W~~ 119 (626)
.|.|.++...++|.|.=+..+.. +. ......+.++..|.+...++ -+..|+...-.|.+.. .|.-.+.+.|++
T Consensus 290 pL~I~sltaATeGvY~Wrv~~~~n~t~~~~~~VtV~~yr~PsVsV~p~---PVL~Ge~YkAtC~vA~YYPp~SvrlrWf~ 366 (566)
T PHA03269 290 SLHILSLDASTEGTYIWRVIHTANKNVINEHHITVMSYKRPNITVIGD---PVLLGNPYAAYCKVNKYYPPHSVIVKWTS 366 (566)
T ss_pred ceEEeecccccCceEEEEEecCCCCceeeeeEEEEEEecCCCccccCC---ccccCCCceEEEEeeeecCCCceEEEEEe
Confidence 39999999999999987765432 33 33445666667776544332 4789999999999987 455568899999
Q ss_pred CCEEecc
Q psy12061 120 NGVRIGN 126 (626)
Q Consensus 120 ~~~~~~~ 126 (626)
||..+..
T Consensus 367 ng~~V~~ 373 (566)
T PHA03269 367 NFGNIGK 373 (566)
T ss_pred CCcccCc
Confidence 9999875
No 396
>PHA03270 envelope glycoprotein C; Provisional
Probab=96.76 E-value=0.055 Score=50.77 Aligned_cols=79 Identities=15% Similarity=0.192 Sum_probs=61.1
Q ss_pred EEEccCCCCCCEEEEEEEEcCCCCcee--eEEEEEEeCCceeeeCCCceEEecCCcEEEEEEecc-cCCcceeEEEeeCC
Q psy12061 45 LLISPVSRDDSGIYSCTATNVHGMDES--KGRLIVLHGPSYYEQLPPKITIAAHRNLQLRCSAHT-EELLDVAYIWTHNG 121 (626)
Q Consensus 45 L~i~~v~~~d~G~Y~C~a~n~~g~~~~--~~~l~v~~~p~~~~~~~~~~~v~~g~~~~l~C~~~~-~p~p~~~i~W~~~~ 121 (626)
|.|..++...+|.|.=..-+..+.... ...+..+.+|.+...++ -+..|+...-.|.+.. .|.-.+.+.|++||
T Consensus 184 L~I~slt~aTeGvY~Wr~~~~~~~~~~~~~VtV~~yr~Psvsv~~~---PvL~Ge~Y~AtC~va~YYPp~Sv~lrWf~ng 260 (466)
T PHA03270 184 LVIQELTLATQGMYYWARGPADRPHRYGTWTRVRMFRRPSLSIRPH---AVLEGEPFGATCVAANYYPGDRAAFRWFEGG 260 (466)
T ss_pred EEEEEcccccceEEEEEEecCCCceeeeeEEEEEEecCCcccccCC---ccccCCCceEEEEeeeecCCCceEEEEEeCC
Confidence 999999999999999998776665443 34555566777644433 4678999999999887 45456789999999
Q ss_pred EEecc
Q psy12061 122 VRIGN 126 (626)
Q Consensus 122 ~~~~~ 126 (626)
.++..
T Consensus 261 ~~V~~ 265 (466)
T PHA03270 261 DEVFA 265 (466)
T ss_pred ccccC
Confidence 99864
No 397
>cd07703 Ig2_Nectin-2_like Second immunoglobulin (Ig) domain of nectin-2 (also known as poliovirus receptor related protein 2 or CD112) and similar proteins. Ig2_Nectin-2_like: domain similar to the second immunoglobulin (Ig) domain of nectin-2 (also known as poliovirus receptor related protein 2 or CD112). Nectin-2 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectin-2 and nectin-3 localize at Sertoli-spermatid junctions where they form heterophilic trans-interactions between the cells that are essential for the formation and maintenance of the junctions and for spermatid development.
Probab=96.76 E-value=0.0061 Score=45.20 Aligned_cols=62 Identities=11% Similarity=0.168 Sum_probs=39.2
Q ss_pred ceEEEEeeeC-CCCCCeeEEEeCCEEccCCCcEEEccCC------cEEEccCCCCCCEEEEEEEEcCCCC
Q psy12061 6 GNVTIFCNPE-AAPKPKFVWKKDGNIIGSGGRRKIFENG------NLLISPVSRDDSGIYSCTATNVHGM 68 (626)
Q Consensus 6 ~~~~l~C~~~-g~p~p~i~W~~~~~~i~~~~~~~~~~~g------~L~i~~v~~~d~G~Y~C~a~n~~g~ 68 (626)
..+.+.|.+. |.|+++|+|+++..... ........+| .|.+..-..+|...|+|.|.+....
T Consensus 16 ~~~va~C~s~~gkPaa~IsW~~~~~g~~-~~~~~~~~~gt~tv~S~l~~~P~~~d~Gk~ltC~v~h~al~ 84 (95)
T cd07703 16 PVPVAKCVSANGRPPARISWSSTLGGNA-NTTSKENGDGTVTVTSEYSLVPTPEANGKEVTCKVEHETLQ 84 (95)
T ss_pred ccEEEEEEcCCCCCCcEEEEEcCCCCCe-eEEEEeCCCCCEEEEEEEEEecCHHHCCCEEEEEEeCcccC
Confidence 5678999885 66999999999822110 1111122233 3666544556666899999987543
No 398
>PF01108 Tissue_fac: Tissue factor; PDB: 3OG4_B 3OG6_B 1FYH_E 1FG9_D 1JRH_I 3DGC_R 3DLQ_R 1LQS_R 1Y6M_R 1J7V_R ....
Probab=96.72 E-value=0.01 Score=45.63 Aligned_cols=81 Identities=17% Similarity=0.276 Sum_probs=56.5
Q ss_pred CCCceeEeecCCcCeEEEEEeeCCCCCcccCcceEEEEEEecCCCcceeeeeeeecceeeEEEEeCCC--cceeEEEEEE
Q psy12061 289 QAPSRIGGGGGKIGDLSISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETLKEYGNVGIAVVRIPSE--FYYTEYEVKV 366 (626)
Q Consensus 289 ~~p~~~~~~~~~~~~v~l~W~~~~~~~~~~~~~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L--~p~~~Y~~~v 366 (626)
.+|.++++.... -...|.|++.+ .......|.|+|+..+...|....... +.....+.++.. .+...|.+||
T Consensus 23 p~P~nv~~~s~n-f~~iL~W~~~~---~~~~~~~ytVq~~~~~~~~W~~v~~C~--~i~~~~Cdlt~~~~~~~~~Y~~rV 96 (107)
T PF01108_consen 23 PAPQNVTVDSVN-FKHILRWDPGP---GSPPNVTYTVQYKKYGSSSWKDVPGCQ--NITETSCDLTDETSDPSESYYARV 96 (107)
T ss_dssp SSCEEEEEEEET-TEEEEEEEEST---TSSSTEEEEEEEEESSTSCEEEECCEE--EESSSEEECTTCCTTTTSEEEEEE
T ss_pred CCCCeeEEEEEC-CceEEEeCCCC---CCCCCeEEEEEEEecCCcceeecccee--cccccceeCcchhhcCcCCEEEEE
Confidence 588899987653 56899999832 234567899999977788888763221 223345556553 3678999999
Q ss_pred EEecCCCCC
Q psy12061 367 QAINDVGPG 375 (626)
Q Consensus 367 ~a~n~~g~~ 375 (626)
+|......|
T Consensus 97 ~A~~~~~~S 105 (107)
T PF01108_consen 97 RAEVGNQTS 105 (107)
T ss_dssp EEEETTEEE
T ss_pred EEEeCCccC
Confidence 999765544
No 399
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=96.72 E-value=2.2 Score=51.23 Aligned_cols=160 Identities=16% Similarity=0.097 Sum_probs=94.3
Q ss_pred CCCCceEEEEeeeCCCCCCeeEEEeCC-EEccCCCcEEEccCCcEEEccCCCCCCEEEEEEEEcCCCCceeeEEEEEEeC
Q psy12061 2 AGEGGNVTIFCNPEAAPKPKFVWKKDG-NIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTATNVHGMDESKGRLIVLHG 80 (626)
Q Consensus 2 ~~~G~~~~l~C~~~g~p~p~i~W~~~~-~~i~~~~~~~~~~~g~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~ 80 (626)
+..|+.++|.+.+...+...+.|..++ .+.. ...+......-..-..-...-.|.|..+.......+.|..+
T Consensus 1879 ~~~n~~v~fsa~l~~GS~Vtf~w~fGdgs~~~-------~t~~~t~~HsY~~~G~Y~VtV~A~N~Vs~~~a~~~V~Vle~ 1951 (2740)
T TIGR00864 1879 AAIGEKVEFQILLAAGSAVNFRLQIGGAAPEV-------LQPGPRFSHSFPRVDDHMVNLRAKNEVSCAQANLHIEVLEA 1951 (2740)
T ss_pred ccCCCEEEEEEEecCCCceEEEEEeCCCCcee-------ecCCCeEEeecCCCCcEEEEEEEEeccceeeeeEEEEEEEe
Confidence 457999999999877778899999864 2221 11221111212223344446678888888777777777655
Q ss_pred CceeeeCCCce-EEecCCcEEEEEEecccCCcceeEEEeeCCEEeccccCCccCCCeeEecCCeEEEeecCCCCCEeEEE
Q psy12061 81 PSYYEQLPPKI-TIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEITNASFADAGEYEC 159 (626)
Q Consensus 81 p~~~~~~~~~~-~v~~g~~~~l~C~~~~~p~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C 159 (626)
=.-+....... .+..|+..+|.-.+....+ +.+.|+.+-..+.... .+...+...... ....|.|..
T Consensus 1952 V~gL~I~~~c~~~~~~g~~~tF~A~v~~g~~--V~f~W~f~~~~~~g~~-------~~~~~G~~vty~---~~~~G~~~I 2019 (2740)
T TIGR00864 1952 VRGLQIPDCCAAGIATGEEKNFTANVQRGKP--VAFAWTFDLHHLHGDS-------LVIHMGKDVSYT---AEAAGLLEI 2019 (2740)
T ss_pred ccceEecCCcccceecCceEEEEEEEecCCc--eEEEEEeeecccCCCc-------ceeecCCceEEc---cCCCcEEEE
Confidence 23333222212 2688999999999865543 6789986543333221 111111122221 246787776
Q ss_pred E--EEeCCCceEEEEEEEEeCCC
Q psy12061 160 V--VKSTVGKISTKTTVIVEGPP 180 (626)
Q Consensus 160 ~--a~n~~g~~~~~~~l~v~~~P 180 (626)
. |.|..|..+....+.|+.+.
T Consensus 2020 ~v~A~N~l~s~n~t~~i~VQ~~i 2042 (2740)
T TIGR00864 2020 QLGAFNALGAENITLQLEAQDAL 2042 (2740)
T ss_pred EEEEEcccCcccccEEEEEEehe
Confidence 5 56888887777777777554
No 400
>PHA03271 envelope glycoprotein C; Provisional
Probab=96.70 E-value=0.15 Score=47.62 Aligned_cols=156 Identities=15% Similarity=0.187 Sum_probs=82.3
Q ss_pred CCCCceEEEEeeeCCC-CCC--eeEEEeCCEEccCCCcEEE---cc---CC-----cEEEccCCCCCCEEEEEEEEcCCC
Q psy12061 2 AGEGGNVTIFCNPEAA-PKP--KFVWKKDGNIIGSGGRRKI---FE---NG-----NLLISPVSRDDSGIYSCTATNVHG 67 (626)
Q Consensus 2 ~~~G~~~~l~C~~~g~-p~p--~i~W~~~~~~i~~~~~~~~---~~---~g-----~L~i~~v~~~d~G~Y~C~a~n~~g 67 (626)
+-+|+...-.|.+... |+- .+.|++||.++.......- .. +| +|.+.+...+..=..+|.+.=..+
T Consensus 257 VL~Ge~YkAtC~vAnYYPP~SvrlrWf~nG~~V~~~~~rdt~~~w~d~~~g~S~VSTltl~a~~~~~PPsLRCeV~W~rd 336 (490)
T PHA03271 257 VLSGENYKASCIVRHFYPPGSVYVSWRQNGNIATPRKDRDGSFWWFESGRGATLVSTITLGNSGIDPPPKISCLVAWKQG 336 (490)
T ss_pred cccCCCceEEEEeeeecCCCceEEEEEeCCccccCccccceeEEEecCCCceeEEEEEEcccccCCCCCCceEEEEEccC
Confidence 4579999999999776 443 8999999999864321111 11 12 244443322233378998874333
Q ss_pred CceeeEEEEEEeCCceeeeCCCceEEecCCcEEEEEEecccCCcceeEEEeeCCEEeccccCCccCCCeeEecCCeEEEe
Q psy12061 68 MDESKGRLIVLHGPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEIT 147 (626)
Q Consensus 68 ~~~~~~~l~v~~~p~~~~~~~~~~~v~~g~~~~l~C~~~~~p~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~ 147 (626)
...... .-...|.....|.-.+....| ...|++...|. .+.+.|..++.............+-.....+...|+
T Consensus 337 ~v~s~r--nAaatP~VY~~P~ISv~FedG---~AVCtA~CVP~-gV~lrWlVgD~p~pn~t~d~~itGvC~erPGlVNLr 410 (490)
T PHA03271 337 DMISTT--NATAIPTVYHHPRISLAFKDG---YAICTIECVPS-GITVRWLVHDEPQPNTTYDTVVTGLCRTIDRHRNLI 410 (490)
T ss_pred Cceeee--ecccCCccccCCeEEEEEeCC---EEEEeccccCC-CcEEEEEecCCCCCCcccccccccccCCCCCceeee
Confidence 222221 222333333322222333334 35688888885 689999976655432210000011111223455565
Q ss_pred e-cCCCCC---EeEEEEEEe
Q psy12061 148 N-ASFADA---GEYECVVKS 163 (626)
Q Consensus 148 ~-~~~~d~---g~Y~C~a~n 163 (626)
+ ...+|. -.|+|++..
T Consensus 411 S~lPlSd~dgpveYTCrL~G 430 (490)
T PHA03271 411 SRIPVQDNWQKTKYTCRLIG 430 (490)
T ss_pred ccCCchhcCCceeEEEEEee
Confidence 5 333433 489998864
No 401
>cd04985 IgC_CH1 CH1 domain (first constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH1: The first immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fab antigen-binding fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=96.63 E-value=0.0068 Score=45.15 Aligned_cols=60 Identities=22% Similarity=0.478 Sum_probs=38.1
Q ss_pred CceEEEEeeeCCC-CCC-eeEEEeCCEEccCCCc--EEEcc-CCc------EEEccCCCCCCEEEEEEEEcC
Q psy12061 5 GGNVTIFCNPEAA-PKP-KFVWKKDGNIIGSGGR--RKIFE-NGN------LLISPVSRDDSGIYSCTATNV 65 (626)
Q Consensus 5 G~~~~l~C~~~g~-p~p-~i~W~~~~~~i~~~~~--~~~~~-~g~------L~i~~v~~~d~G~Y~C~a~n~ 65 (626)
++.++|.|.+.|. |.. +|+|+|||.. ..+-. -.+.. +|+ |.|..-.......|.|.+...
T Consensus 16 ~~~~~L~C~a~gFyP~~i~vtW~k~g~~-~~~~~~~~~~~~~dgty~~~s~L~v~~~~w~~~~~ytC~V~H~ 86 (95)
T cd04985 16 SDSVTLGCLATGFLPEPVTFTWNSGSNS-TSGVKTYPAVLQSGGLYTASSQLTVPASEWKGKESFYCKVEHP 86 (95)
T ss_pred CCcEEEEEEEeeEECCCcEEEEeECCEE-CCCcEECCCEeCCCCCEEEEEEEEEeHHHcCCCCcEEEEEEeC
Confidence 5679999999996 554 8999999998 32210 01222 443 444433222356799999765
No 402
>KOG4597|consensus
Probab=96.62 E-value=0.0022 Score=60.13 Aligned_cols=79 Identities=13% Similarity=0.184 Sum_probs=61.8
Q ss_pred CCCCCceEEEEeeeCCCCCCeeEEEe---CCEEccCC-----CcEEEccCCcEEEccCCCCCCEEEEEEEEcCCCCceee
Q psy12061 1 YAGEGGNVTIFCNPEAAPKPKFVWKK---DGNIIGSG-----GRRKIFENGNLLISPVSRDDSGIYSCTATNVHGMDESK 72 (626)
Q Consensus 1 ~~~~G~~~~l~C~~~g~p~p~i~W~~---~~~~i~~~-----~~~~~~~~g~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~ 72 (626)
|+-.|+++.++|-+.|.|.+.|.|.+ |+..+... ++..+.+-..|.|-+....|+|.|+|.|.|..|-....
T Consensus 207 ~vg~wetcS~tCg~~G~q~r~V~c~qv~anr~~vv~~~nq~~e~p~vtstcql~ic~ewq~~a~w~tCs~rcg~g~~~rd 286 (560)
T KOG4597|consen 207 FVGDWETCSSTCGVQGRQYRVVTCEQVFANRENVVMRPNQTVENPVVTSTCQLVICNEWQADAGWYTCSARCGAGFLRRD 286 (560)
T ss_pred hcccchhhcccccccCCcCceeeeehhhccccceeecCccccCCcceeeeeeEEEcchhhcCCCceeeccccccceeecc
Confidence 46789999999999999999999997 43333211 33333444579999999999999999999999998888
Q ss_pred EEEEEEe
Q psy12061 73 GRLIVLH 79 (626)
Q Consensus 73 ~~l~v~~ 79 (626)
+.+.+..
T Consensus 287 v~c~s~~ 293 (560)
T KOG4597|consen 287 VPCSSVK 293 (560)
T ss_pred ceeeeec
Confidence 7666644
No 403
>cd07689 Ig2_VCAM-1 Second immunoglobulin (Ig)-like domain of vascular endothelial cell adhesion molecule-1 (VCAM-1, CD106) and intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins. Ig2_ VCAM-1_like: domain similar to the second immunoglobulin (Ig)-like domain of vascular endothelial cell adhesion molecule-1 (VCAM-1, CD106). During the inflammation process, these molecules recruit leukocytes onto the vascular endothelium before extravasation to the injured tissues. The interaction of VCAM-1 binding to the beta1 integrin very late antigen (VLA-4) expressed by lymphocytes and monocytes mediates the adhesion of leucocytes to blood vessel walls, and regulates migration across the endothelium. During metastasis, some circulating cancer cells extravasate to a secondary site by a similar process. VCAM-1 may be involved in organ targeted tumor metastasis and may also act as host receptors for viruses and parasites. VCAM-1 contains seven Ig domains.
Probab=96.61 E-value=0.0086 Score=43.91 Aligned_cols=65 Identities=20% Similarity=0.237 Sum_probs=42.8
Q ss_pred CCCCceEEEEeeeCCC-CC--CeeEEEeCCEEccCCCcEEE------ccC-CcEEEccCCCCCCE-EEEEEEEcCCC
Q psy12061 2 AGEGGNVTIFCNPEAA-PK--PKFVWKKDGNIIGSGGRRKI------FEN-GNLLISPVSRDDSG-IYSCTATNVHG 67 (626)
Q Consensus 2 ~~~G~~~~l~C~~~g~-p~--p~i~W~~~~~~i~~~~~~~~------~~~-g~L~i~~v~~~d~G-~Y~C~a~n~~g 67 (626)
..+|+.+++.|.+.+. |. .+|.|+|+...+.+..-... ... -.+.|.- +.+|.| .|.|.|.-..+
T Consensus 12 l~~G~~vtv~C~v~~v~P~~~l~v~LlkG~~~l~~~~f~~~~~~ks~~~~~~~vtftp-treD~g~~fsC~A~L~l~ 87 (99)
T cd07689 12 LEEGKPVTVKCEVPDVYPFDRLEIELLKGETLLPSKSFLEDMDKKSLETKSLEVTFTP-TIEDIGKVLVCRAKLHID 87 (99)
T ss_pred ccCCceEEEEEEecCcccCCceEEEEecCcceecccccccccccCCCCCcceeEEEec-chhhCCcEEEEEEEEeec
Confidence 4789999999999765 55 58999998877753321110 001 1366665 466666 89999985543
No 404
>cd05721 IgV_CTLA-4 Immunoglobulin (Ig) domain of cytotoxic T lymphocyte-associated antigen 4 (CTLA-4). IgV_CTLA-4: domain similar to the variable(v)-type immunoglobulin (Ig) domain found in cytotoxic T lymphocyte-associated antigen 4 (CTLA-4). CTLA-4 is involved in the regulation of T cell response, acting as an inhibitor of intracellular signalling. CTLA-4 is similar to CD28, a T cell co-receptor protein that recognizes the B7 proteins (CD80 and CD86). CD28 binding of the B7 proteins occurs after the presentation of antigen to the T cell receptor (TCR) via the peptide-MHC complex on the surface of an antigen presenting cell (APC). CTLA-4 also binds the B7 molecules with a higher affinity than does CD28. The B7/CTLA-4 interaction generates inhibitory signals down-regulating the response, and may prevent T cell activation by weak TCR signals. CD28 and CTLA-4 then elicit opposing signals in the regulation of T cell responsiveness and homeostasis. T cell activation leads to increased
Probab=96.60 E-value=0.01 Score=45.04 Aligned_cols=74 Identities=8% Similarity=0.084 Sum_probs=47.7
Q ss_pred CCceEEecCCcEEEEEEecccCCcc-eeEEEeeCCE-Eeccc-------cCCccCCCeeEe------cCCeEEEeecCCC
Q psy12061 88 PPKITIAAHRNLQLRCSAHTEELLD-VAYIWTHNGV-RIGNM-------DLNELETPNINI------DGGLLEITNASFA 152 (626)
Q Consensus 88 ~~~~~v~~g~~~~l~C~~~~~p~p~-~~i~W~~~~~-~~~~~-------~~~~~~~~~~~~------~~~~l~i~~~~~~ 152 (626)
+....+..|..++|.|.+.+..... ..+.|.|... .+..- ........++.. +.-.|.|.+++.+
T Consensus 5 ~~~~lv~p~~sv~LsC~~sg~~~s~e~~~~wvRq~pg~lE~c~~~~~~g~~~~~~~~r~tcs~~~s~ntv~L~l~~L~a~ 84 (115)
T cd05721 5 QSPVLASSNGAASLVCEYTYNGFSKEFRASLLKGADSAVEVCAVTGNMSNQLQTSLDGFNCDGTLGNEQVNFTLQNLRAN 84 (115)
T ss_pred cCCeEEcCCCCEEEEEEecCCccccEEEEEEEEeCCCCcEEEEEEeCCCccccccCCCeEEeEeCCCCEEEEEEcCCCHH
Confidence 3456678899999999998876666 7789997321 21110 011011222221 1227999999999
Q ss_pred CCEeEEEEE
Q psy12061 153 DAGEYECVV 161 (626)
Q Consensus 153 d~g~Y~C~a 161 (626)
|++.|.|..
T Consensus 85 DTa~Y~Ca~ 93 (115)
T cd05721 85 QTDIYFCKI 93 (115)
T ss_pred HCeEEEEEe
Confidence 999999964
No 405
>PF08204 V-set_CD47: CD47 immunoglobulin-like domain; InterPro: IPR013270 This family represents the CD47 leukocyte antigen V-set like Ig domain [, ].; PDB: 2VSC_B 2JJS_D 2JJT_C.
Probab=96.53 E-value=0.0045 Score=48.13 Aligned_cols=83 Identities=13% Similarity=0.229 Sum_probs=49.8
Q ss_pred ecCCcEEEEEEecc---cCCcceeEEEeeCCEEeccccCCcc-------CCCee---EecCCeEEEeecCCCCCEeEEEE
Q psy12061 94 AAHRNLQLRCSAHT---EELLDVAYIWTHNGVRIGNMDLNEL-------ETPNI---NIDGGLLEITNASFADAGEYECV 160 (626)
Q Consensus 94 ~~g~~~~l~C~~~~---~p~p~~~i~W~~~~~~~~~~~~~~~-------~~~~~---~~~~~~l~i~~~~~~d~g~Y~C~ 160 (626)
.=.+++.|.|.+.. ...+.+.|.|.++|..+-..+-... .+..+ .-++-+|.+...+.- .|+|+|.
T Consensus 25 ~CN~tV~IPC~v~n~~~~ni~~m~VkWk~~~~~If~~dg~~~~~~~~~f~sa~i~~l~kG~aSL~~~~~~a~-~GnYTCe 103 (130)
T PF08204_consen 25 VCNDTVVIPCFVNNLEANNISEMYVKWKFKNKDIFIFDGTNNKSTSDNFPSAKISELLKGNASLKMDKSDAV-EGNYTCE 103 (130)
T ss_dssp TT-SEEEE--BBSS---SSGGGEEEEEEETTEEEEEEETTTTEEEEGGGTT-BEGGGGGTB--EEEEHHHHH--EEEEEE
T ss_pred ecCCCEEEEeEeccccccccceEEEEEEECCeEEEEEcCccceecccCccccchhHhhCCCEEEEEcchhcc-ccceEEE
Confidence 45689999999976 3445678999999988753310000 00000 012335888775444 8999999
Q ss_pred EEeCCCceEEEEEEEEe
Q psy12061 161 VKSTVGKISTKTTVIVE 177 (626)
Q Consensus 161 a~n~~g~~~~~~~l~v~ 177 (626)
+.......+..+.|...
T Consensus 104 Vt~~~~ege~~i~Lk~~ 120 (130)
T PF08204_consen 104 VTELSREGETTIELKYR 120 (130)
T ss_dssp EEETTEEEEEEEEEEE-
T ss_pred EEecCCCceEEEEEEEE
Confidence 99888888888887753
No 406
>PF01108 Tissue_fac: Tissue factor; PDB: 3OG4_B 3OG6_B 1FYH_E 1FG9_D 1JRH_I 3DGC_R 3DLQ_R 1LQS_R 1Y6M_R 1J7V_R ....
Probab=96.51 E-value=0.013 Score=45.08 Aligned_cols=82 Identities=17% Similarity=0.211 Sum_probs=52.5
Q ss_pred CCCceEEEeeeCCCEEEEEEeecCCCCCCCceeeEEEEEEEeccCCccccceeeecCccceEEecCCC--CCceEEEEEE
Q psy12061 495 KPPSAVHIKGINPTTVHVTWRYVSPSFEEEPIIGYKVRVWEVDQDMSRANDTIIPVGNTLDADIVDLS--PGKRYHMRVL 572 (626)
Q Consensus 495 ~~p~~l~~~~~~~~~~~l~W~~~~~~~~~~~i~~Y~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~--p~~~Y~~~V~ 572 (626)
.+|.++++...+ ....|.|++ +. ....-..|.|+|+......+.... .-.+-..+.+.++... +...|.+||+
T Consensus 23 p~P~nv~~~s~n-f~~iL~W~~--~~-~~~~~~~ytVq~~~~~~~~W~~v~-~C~~i~~~~Cdlt~~~~~~~~~Y~~rV~ 97 (107)
T PF01108_consen 23 PAPQNVTVDSVN-FKHILRWDP--GP-GSPPNVTYTVQYKKYGSSSWKDVP-GCQNITETSCDLTDETSDPSESYYARVR 97 (107)
T ss_dssp SSCEEEEEEEET-TEEEEEEEE--ST-TSSSTEEEEEEEEESSTSCEEEEC-CEEEESSSEEECTTCCTTTTSEEEEEEE
T ss_pred CCCCeeEEEEEC-CceEEEeCC--CC-CCCCCeEEEEEEEecCCcceeecc-ceecccccceeCcchhhcCcCCEEEEEE
Confidence 478999988765 569999995 22 223445799999833333211110 0233355778887644 6889999999
Q ss_pred EEecCCCCC
Q psy12061 573 AFSNGGDGR 581 (626)
Q Consensus 573 a~~~~G~g~ 581 (626)
|......|+
T Consensus 98 A~~~~~~S~ 106 (107)
T PF01108_consen 98 AEVGNQTSD 106 (107)
T ss_dssp EEETTEEEE
T ss_pred EEeCCccCC
Confidence 998765443
No 407
>KOG4806|consensus
Probab=96.51 E-value=0.35 Score=44.05 Aligned_cols=123 Identities=20% Similarity=0.289 Sum_probs=70.0
Q ss_pred EEEeCCccCceEEEEEEEeeCCCCCCCCccEEEeec---CCCCCCCCceEEEeee--CCCEEEEEEeecCCCCCCCceee
Q psy12061 454 ALIVGLQPDTKYYVKVMAYNNAGEGPESERYLERTY---RKAPQKPPSAVHIKGI--NPTTVHVTWRYVSPSFEEEPIIG 528 (626)
Q Consensus 454 ~~i~~L~p~t~Y~v~V~a~~~~g~s~~s~~~~~~t~---~~~p~~~p~~l~~~~~--~~~~~~l~W~~~~~~~~~~~i~~ 528 (626)
+.-..+.++..|..+++..|.... +..-.+...|. .+.|. .|.+-++..+ ..+++++.|.. .++ ..+ .
T Consensus 286 ~~Qfvv~~~~~~~~rf~~~ndde~-~~~v~V~aSt~~t~~~~P~-LP~dTtVk~v~r~CSsAtIaW~g-s~d---~~~-k 358 (454)
T KOG4806|consen 286 IRQFVVLPGERYLMRFEPSNDDEA-LQKVMVAASTEATFRDLPE-LPQDTTVKNVRRRCSSATIAWNG-SPD---EEL-K 358 (454)
T ss_pred eeEEEecCCCceEEEEEecCCchh-hheeEeeeecccccCcCCC-CCCCceEeeeccccchheeeecc-Ccc---hhe-e
Confidence 334567788999999999886532 21111222222 22343 6777776655 67899999994 222 122 4
Q ss_pred EEEEEEEeccCCc---------cc------c-----------ceeeecCccceEEecCCCCCceEEEEEEEEecCCCCCC
Q psy12061 529 YKVRVWEVDQDMS---------RA------N-----------DTIIPVGNTLDADIVDLSPGKRYHMRVLAFSNGGDGRM 582 (626)
Q Consensus 529 Y~i~~~~~~~~~~---------~~------~-----------~~~~~~~~~~~~~l~~L~p~~~Y~~~V~a~~~~G~g~~ 582 (626)
|=|+.+...+... .. . .......+...-+|.||.||..|.+.|.|.-..|..-+
T Consensus 359 yCIy~~~~~~~e~~v~~~~N~C~g~~~~~~s~~v~c~y~hs~~~q~~~~~i~teTI~gL~PgssYlldv~a~~~~g~~lp 438 (454)
T KOG4806|consen 359 YCIYVFNLPQRERSVVDFTNYCMGFVPKRVSQYVYCEYMHSRERQQSPDNIETETILGLMPGSSYLLDVTANLSMGKPLP 438 (454)
T ss_pred EEEEEecccchhhhhhhhhccccCccccceeEEEeEEEecChhhhcchhhhhhhhhcccccCceEEEEEEEcccCCcccc
Confidence 6664433322100 00 0 00011123344568899999999999999888765543
Q ss_pred C
Q psy12061 583 S 583 (626)
Q Consensus 583 s 583 (626)
-
T Consensus 439 y 439 (454)
T KOG4806|consen 439 Y 439 (454)
T ss_pred c
Confidence 3
No 408
>PHA02633 hypothetical protein; Provisional
Probab=96.50 E-value=0.0084 Score=38.98 Aligned_cols=39 Identities=33% Similarity=0.379 Sum_probs=32.8
Q ss_pred CCcEEEccCCCCCCEEEEEEEEcCCCCceeeEEEEEEeC
Q psy12061 42 NGNLLISPVSRDDSGIYSCTATNVHGMDESKGRLIVLHG 80 (626)
Q Consensus 42 ~g~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~ 80 (626)
+.+|-|-++..+|+|.|.|+..|..-....++.|.|...
T Consensus 17 ~~nLwilpa~~sDSGiYiC~~rn~t~c~~~si~l~V~~~ 55 (63)
T PHA02633 17 CNNMLILNPTQSDSGIYMCITKNETYSDMMKFDLCICLR 55 (63)
T ss_pred cccEEEeccccccCcEEEEEEcCCCeeEEEEEEEEEeec
Confidence 446999999999999999999988777777888888553
No 409
>PHA03270 envelope glycoprotein C; Provisional
Probab=96.37 E-value=0.17 Score=47.66 Aligned_cols=115 Identities=18% Similarity=0.262 Sum_probs=67.6
Q ss_pred CCCCceEEEEeeeCCC-CCC--eeEEEeCCEEccCC----CcEEEccCCcEEEccCCCCCCE------EEEEEEEc-CCC
Q psy12061 2 AGEGGNVTIFCNPEAA-PKP--KFVWKKDGNIIGSG----GRRKIFENGNLLISPVSRDDSG------IYSCTATN-VHG 67 (626)
Q Consensus 2 ~~~G~~~~l~C~~~g~-p~p--~i~W~~~~~~i~~~----~~~~~~~~g~L~i~~v~~~d~G------~Y~C~a~n-~~g 67 (626)
+-+|+...-.|.+... |+- .+.|++||.++..- .......+|-..+..++.++.+ ..+|.+.= ..+
T Consensus 231 vL~Ge~Y~AtC~va~YYPp~Sv~lrWf~ng~~V~~~~~i~~~~~~~~dGfs~vStvtsea~~~~~~PPsLrC~v~W~rd~ 310 (466)
T PHA03270 231 VLEGEPFGATCVAANYYPGDRAAFRWFEGGDEVFAPERVRTRVDAQRDGFSATSTLTSEARAGLAPPRNLTCEFTWHRDS 310 (466)
T ss_pred cccCCCceEEEEeeeecCCCceEEEEEeCCccccCcceeeeeeEecCCCeeEEEEEeccccccCCCCCCceEEEEEccCC
Confidence 4579999999999775 443 89999999998642 2223334552333334444332 67998873 333
Q ss_pred Cceee----EEEEEEeCCceeeeCCCceEEecCCcEEEEEEecccCCcceeEEEeeCCEEecc
Q psy12061 68 MDESK----GRLIVLHGPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGN 126 (626)
Q Consensus 68 ~~~~~----~~l~v~~~p~~~~~~~~~~~v~~g~~~~l~C~~~~~p~p~~~i~W~~~~~~~~~ 126 (626)
...+. +.-.|+.+|.+ ++....| ...|++...|. .+.+.|..++.....
T Consensus 311 vS~sR~nAa~~P~VY~~P~I------sv~F~dG---~AVCtA~CVPe-gV~l~W~V~D~~~pa 363 (466)
T PHA03270 311 VSFSRRNATGAPTVLPRPTI------EMEFGGD---EAVCTAACVPE-GVTLAWLLGADPAPA 363 (466)
T ss_pred ccceeecccccCccccCCeE------EEEEeCC---EEEEeccccCC-CCEEEEEecCCCCCC
Confidence 22222 22233333322 2223333 35688888886 689999977665543
No 410
>PF09067 EpoR_lig-bind: Erythropoietin receptor, ligand binding; InterPro: IPR015152 Members of this entry include the growth hormone and erythropoietin receptors. The latter interacts with erythropoietin (EPO), with subsequent initiation of the downstream chain of events associated with binding of EPO to the receptor, including EPO-induced erythroblast proliferation and differentiation through induction of the JAK2/STAT5 signalling cascade. The domain adopts a secondary structure composed of a short amino-terminal helix, followed by two beta-sandwich regions []. ; PDB: 3NCB_B 3NCF_B 3NCE_B 3N0P_B 3NCC_B 1BP3_B 3N06_B 3MZG_B 3D48_R 1F6F_C ....
Probab=96.09 E-value=0.061 Score=40.59 Aligned_cols=84 Identities=19% Similarity=0.382 Sum_probs=57.4
Q ss_pred CCCCCceeEeecCCcCeEEEEEeeCCCCCcccCcceEEEEEEecCCCcceeeeeeeecceee-----EEEEeCCCcceeE
Q psy12061 287 PYQAPSRIGGGGGKIGDLSISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETLKEYGNVGI-----AVVRIPSEFYYTE 361 (626)
Q Consensus 287 p~~~p~~~~~~~~~~~~v~l~W~~~~~~~~~~~~~~y~i~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~L~p~~~ 361 (626)
|+..|.++.........+++.|++ ....+.+ ..|.+.|...+ ..|+............ ..+...+..-.+.
T Consensus 7 ~p~~P~~~~C~S~~~etftC~W~~--g~~~~l~-~~y~L~Y~~~~-~~~~eCp~~~~~~~ns~~~~~C~F~~~~t~lf~~ 82 (104)
T PF09067_consen 7 PPEKPENLKCFSREMETFTCFWEP--GSEGNLP-TNYTLFYKKEG-EEWKECPDYSTSGPNSTVRHICYFPKSDTSLFVP 82 (104)
T ss_dssp HCCCCEEEEEEBSSSS-EEEEEEE--ESSSTST-CEEEEEEEETT-SEEEEESESSTTETTEEEEEEEEE-CCGCSSSSE
T ss_pred CCCCCccCccCCCCCCcEEEEeeC--CCCCCCC-CcEEEEEEeCC-CCCccCCCeEecCCCCceeEEEEcCCCCeEEEEE
Confidence 446788899888888999999998 4444433 34999999887 6666654432221122 3344445666899
Q ss_pred EEEEEEEecCCCC
Q psy12061 362 YEVKVQAINDVGP 374 (626)
Q Consensus 362 Y~~~v~a~n~~g~ 374 (626)
|.++|.|.|..|.
T Consensus 83 y~i~V~a~~~~~~ 95 (104)
T PF09067_consen 83 YCIQVEATNALGS 95 (104)
T ss_dssp EEEEEEEEETTEE
T ss_pred EEEEEEeccCCCc
Confidence 9999999998775
No 411
>KOG4228|consensus
Probab=96.09 E-value=0.022 Score=60.27 Aligned_cols=224 Identities=15% Similarity=0.140 Sum_probs=136.7
Q ss_pred eeEeecCCcCeEEEEEeeCCCCCcccCcceEEEEEEecCCCcceeeeeeeecceeeEEEEeCCCcceeEEEEEEEEecCC
Q psy12061 293 RIGGGGGKIGDLSISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETLKEYGNVGIAVVRIPSEFYYTEYEVKVQAINDV 372 (626)
Q Consensus 293 ~~~~~~~~~~~v~l~W~~~~~~~~~~~~~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~p~~~Y~~~v~a~n~~ 372 (626)
...+......++...|..... ....|.+.++..... +...... ....+....+.+...|.+ .+.|..
T Consensus 30 ~~~vt~~~~~~~~~~~~~~~t-----~~~~y~v~~~~~~s~-~~~~~~~-----~~~~~s~~~~~~~~~~~~--~evnt~ 96 (1087)
T KOG4228|consen 30 TPNVTGSTATSWVQAELLGST-----WPNYYQVIFKALSSG-YGYIDVD-----LTTRLSYPCLSPPSFLEL--VEVNTI 96 (1087)
T ss_pred CcccccccccceeehhhccCC-----ChhhhheeeeEeccC-cceeecc-----ceeecccCCCCCcchhhh--hhcccc
Confidence 344445566778888887332 345567766655433 3322221 222345566666666666 888888
Q ss_pred CCCCCCccEEEEccCCCCCCCCCceEEEeeecceEEEEeeeccccccccceeeEEEEEEEEecCCCccceEEEEecCccc
Q psy12061 373 GPGPESEVVTIFSAEDMPQVAPQGVFSRGFNSTAINVTWNPIELIRENIRGRLIGHRIKYWKEDNPEETAVYYLSRTTRN 452 (626)
Q Consensus 373 g~~~~s~~~~~~t~~~~p~~~p~~~~~~~~~~~si~l~W~~~~~~~~~~~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~ 452 (626)
|.+..+.+..-++.+..+...+..............++|..+....
T Consensus 97 ~~a~~~~~~~~rt~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~---------------------------------- 142 (1087)
T KOG4228|consen 97 GRAPFQCPVAPRTGEQATLSLQRDVQALMLSAATAHVNWRRFSATV---------------------------------- 142 (1087)
T ss_pred cccccccccCCccccccccccccchhhhhhhhhhhccCcccccccc----------------------------------
Confidence 8888877776666666555455555554455555666666543110
Q ss_pred eEEEeCCccCceEEEEEEEeeCCCCCCCCccEEEeecCCCCCCCCceEEEeeeCCCEEEEEEeecCCCCCCCceeeEEEE
Q psy12061 453 WALIVGLQPDTKYYVKVMAYNNAGEGPESERYLERTYRKAPQKPPSAVHIKGINPTTVHVTWRYVSPSFEEEPIIGYKVR 532 (626)
Q Consensus 453 ~~~i~~L~p~t~Y~v~V~a~~~~g~s~~s~~~~~~t~~~~p~~~p~~l~~~~~~~~~~~l~W~~~~~~~~~~~i~~Y~i~ 532 (626)
.+.+....|.++.+..+.+.|.+..|..++ ......+++++|.++ ....+..|.+.
T Consensus 143 ---------------~~~~~~~~~~~~~~t~i~i~~~~~~p~~~~-----~~~~~~~it~~w~~~----~~~~~~~ykl~ 198 (1087)
T KOG4228|consen 143 ---------------GPLAIASPGLGPPSTYIQITTNANSPIQPG-----EEEEYTTITGSWSPP----HAVSLDTYKLL 198 (1087)
T ss_pred ---------------cccccCCcccCCCCceEEEeccCCCCCCCC-----cceEEEEEEecCCCC----Ccccchhhhhh
Confidence 066666667776677777888888777554 445667899999842 34566778886
Q ss_pred EEEeccCCccccceeeecCccceEEecCCCCCceEEEEEEEEecCCCCCCCCCcEEEee
Q psy12061 533 VWEVDQDMSRANDTIIPVGNTLDADIVDLSPGKRYHMRVLAFSNGGDGRMSSPAITFQM 591 (626)
Q Consensus 533 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~p~~~Y~~~V~a~~~~G~g~~s~~~~~~~~ 591 (626)
+...+.. ................++.|-..|.++..+....+.+.....+...+.
T Consensus 199 ~~~~d~~----~~~~v~~~~~~~~~t~~~~~~~~~~~~~ae~~~~~~~~~~a~i~~r~~ 253 (1087)
T KOG4228|consen 199 HLDPDTG----YEISVTLTPPGSGGTGDLGPPSISRFKCAEPDRGPLGSSTAEIEARQL 253 (1087)
T ss_pred hcCCccc----ceeeeeccCCCCCcccCCCCcccccccccCccccccCCCCcceEEEeh
Confidence 5544332 222223334445556688888899999988888777765533333333
No 412
>PHA02633 hypothetical protein; Provisional
Probab=96.05 E-value=0.02 Score=37.31 Aligned_cols=39 Identities=21% Similarity=0.226 Sum_probs=31.9
Q ss_pred cCCeEEEeecCCCCCEeEEEEEEeCCCceEEEEEEEEeC
Q psy12061 140 DGGLLEITNASFADAGEYECVVKSTVGKISTKTTVIVEG 178 (626)
Q Consensus 140 ~~~~l~i~~~~~~d~g~Y~C~a~n~~g~~~~~~~l~v~~ 178 (626)
....|.|.++..+|+|.|.|...|..--...++.|.|..
T Consensus 16 ~~~nLwilpa~~sDSGiYiC~~rn~t~c~~~si~l~V~~ 54 (63)
T PHA02633 16 NCNNMLILNPTQSDSGIYMCITKNETYSDMMKFDLCICL 54 (63)
T ss_pred ccccEEEeccccccCcEEEEEEcCCCeeEEEEEEEEEee
Confidence 556899999999999999999998766666677777654
No 413
>cd04986 IgC_CH2 CH2 domain (second constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH2: The second immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=96.05 E-value=0.017 Score=43.04 Aligned_cols=62 Identities=18% Similarity=0.331 Sum_probs=37.5
Q ss_pred CCceEEEEeeeCCC--CC-CeeEEEeCCEEccCC-CcEEEccCCc------EEEccCCCCCCEEEEEEEEcCC
Q psy12061 4 EGGNVTIFCNPEAA--PK-PKFVWKKDGNIIGSG-GRRKIFENGN------LLISPVSRDDSGIYSCTATNVH 66 (626)
Q Consensus 4 ~G~~~~l~C~~~g~--p~-p~i~W~~~~~~i~~~-~~~~~~~~g~------L~i~~v~~~d~G~Y~C~a~n~~ 66 (626)
.++.++|.|.+.|. |. ..|.|.+||.. ... .......+|+ |.|..-...-...|+|.+....
T Consensus 18 ~~~~atLtClV~~f~~P~~i~V~W~~~g~~-~~~~t~~~~~~dgTys~~S~L~v~~~~W~~g~~ytC~V~H~~ 89 (99)
T cd04986 18 LGSSASLTCTLSGLRDPEGAVFTWTPSGGK-EAVQTSAESDQCGCYSVSSVLPGCAEEWNKGEPFACTVTHPE 89 (99)
T ss_pred cCCccEEEEEEeccCCCCCeEEEEEECCcc-CcEEcCcccCCCCCEEEEEEEEeCHHHhcCCCeEEEEEECCC
Confidence 46789999999984 54 39999999875 211 1111122443 5544222233346999997653
No 414
>PHA03269 envelope glycoprotein C; Provisional
Probab=95.82 E-value=0.21 Score=47.73 Aligned_cols=151 Identities=19% Similarity=0.218 Sum_probs=81.9
Q ss_pred CCCCceEEEEeeeCCC-CCC--eeEEEeCCEEccCC---CcEEEccCCc------EEEccCCCCC--CEEEEEEEE-cCC
Q psy12061 2 AGEGGNVTIFCNPEAA-PKP--KFVWKKDGNIIGSG---GRRKIFENGN------LLISPVSRDD--SGIYSCTAT-NVH 66 (626)
Q Consensus 2 ~~~G~~~~l~C~~~g~-p~p--~i~W~~~~~~i~~~---~~~~~~~~g~------L~i~~v~~~d--~G~Y~C~a~-n~~ 66 (626)
|-+|+...-.|.+... |+- .+.|++||.+|... .......+|. |.+......| -=..+|.+. ...
T Consensus 339 VL~Ge~YkAtC~vA~YYPp~SvrlrWf~ng~~V~~~~it~t~~~~~dGlFSrVSTLtlp~~~~~d~~PPsLrCeV~W~RD 418 (566)
T PHA03269 339 VLLGNPYAAYCKVNKYYPPHSVIVKWTSNFGNIGKNFITDAIKENADGLFSSVSALHIPAQKNADYPPPAIQCNVLWIRD 418 (566)
T ss_pred cccCCCceEEEEeeeecCCCceEEEEEeCCcccCccccccceeecCCCceEEEEEEeccCccccCCCCCCceEEEEEccC
Confidence 4589999999999775 443 89999999999742 2223344552 3332211111 234599887 333
Q ss_pred CCceee----EEEEEEeCCceeeeCCCceEEecCCcEEEEEEecccCCcceeEEEeeCCEEeccccCCccCCCeeEecCC
Q psy12061 67 GMDESK----GRLIVLHGPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGG 142 (626)
Q Consensus 67 g~~~~~----~~l~v~~~p~~~~~~~~~~~v~~g~~~~l~C~~~~~p~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~ 142 (626)
+..... +.-.|+..|.+ ++....| ...|++...|.-.+.+.|..++......+. ...+-.....+
T Consensus 419 sVS~tRfnAaatP~VY~~PtI------Sm~FedG---~AVCtA~CVP~~~V~l~WlVgD~p~~~~~t--~itG~C~ehPG 487 (566)
T PHA03269 419 GVSHMKYSAAVTPDVYPFPNV------SIEIIDG---HIVCLAKCVPRGVVHFNWWINDIPIEHENS--EILGVCDNNKR 487 (566)
T ss_pred CchheecccccCCccccCCeE------EEEEeCC---EEEEecccccCCCceEEEEecCCCCCCccc--eeeccCCCCCC
Confidence 332222 22233333322 2233333 456888888876678999977666433211 00111112334
Q ss_pred eEEEee---cCCCC-CEeEEEEEEe
Q psy12061 143 LLEITN---ASFAD-AGEYECVVKS 163 (626)
Q Consensus 143 ~l~i~~---~~~~d-~g~Y~C~a~n 163 (626)
...|++ +...| --.|+|++..
T Consensus 488 LVNLRS~~pLS~~dgpveYTCrL~G 512 (566)
T PHA03269 488 FVNLQSSCDTSELDGPITYSCHLDG 512 (566)
T ss_pred ceeecccccccccCCceeEEEEEee
Confidence 556666 33333 2489998753
No 415
>PF02124 Marek_A: Marek's disease glycoprotein A; InterPro: IPR001038 Equid herpesvirus 1 (Equine herpesvirus 1, EHV-1) glycoprotein 13 (EHV-1 gp13) has the characteristic features of a membrane-spanning protein: an N-terminal signal sequence; a hydrophobic membrane anchor region; a charged C-terminal cytoplasmic tail; and an exterior domain with nine potential N-glycosylation sites []. EHV-1 gp13 is the structural homologue of the gC-like glycoproteins of the Human herpesvirus 1 (HHV-1) and Human herpesvirus 2 (HHV-2) (gC-1 and gC-2 respectively), Pseudorabies virus (strain Indiana-Funkhauser/Becker) (PRV) (gIII) and Human herpesvirus 3 (HHV-3) (gp66). Secretory glycoprotein GP57-65 precursor (glycoprotein A - GA) is similar to Herpesvirus glycoprotein C, and belongs to the immunoglobulin gene superfamily [, ]. GA is thought to play an immunoevasive role in the pathogenesis of Marek's disease. It is a candidate for causing the early-stage immunosuppression that occurs after MDHV infection.
Probab=95.75 E-value=1.1 Score=38.41 Aligned_cols=137 Identities=19% Similarity=0.305 Sum_probs=72.1
Q ss_pred eeEEEeCCEEccCC---CcEEEccCC------cEEEccC-CCCCCEEEEEEEEcCCCC-ceeeEEEEEEeCCceeeeCCC
Q psy12061 21 KFVWKKDGNIIGSG---GRRKIFENG------NLLISPV-SRDDSGIYSCTATNVHGM-DESKGRLIVLHGPSYYEQLPP 89 (626)
Q Consensus 21 ~i~W~~~~~~i~~~---~~~~~~~~g------~L~i~~v-~~~d~G~Y~C~a~n~~g~-~~~~~~l~v~~~p~~~~~~~~ 89 (626)
.+.|++||.++... .+.+...+| +|.+... ..+..=..+|.+.=.... ..... .-...|.... +.
T Consensus 8 ~~~Wf~dg~~v~~~~~~~~~~~~~~G~~s~vStl~~~~~~~~~~pp~i~C~v~W~r~~v~~~r~--~a~~~P~Vy~--~P 83 (211)
T PF02124_consen 8 RFRWFEDGNPVEPRFIRDSSQVWSDGLFSRVSTLTLPGNSADSPPPSIRCQVTWYRDSVSETRF--NATATPSVYP--KP 83 (211)
T ss_pred EEEEEECCEeCCccceeeEEEEecCCcEEEEEEEEecCCCCCCCCCcceEEEEEccCCCeeeEe--ecccccceec--CC
Confidence 78999999988743 333444455 3666322 223445689988733332 22222 1112333332 22
Q ss_pred ceEEecCCcEEEEEEecccCCcceeEEEeeCCEEeccccCCccCCCeeEecCCeEEEeecCC--CCCE--eEEEEEEe
Q psy12061 90 KITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEITNASF--ADAG--EYECVVKS 163 (626)
Q Consensus 90 ~~~v~~g~~~~l~C~~~~~p~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~--~d~g--~Y~C~a~n 163 (626)
.+++.- ..-...|.+...|...+.+.|..++....... .....+-.....+...|.+... ...| +|+|.+..
T Consensus 84 ~vsv~F-~~g~AVC~A~CVP~~~v~l~W~v~d~~~~~~~-~~~~~g~C~~~pglvnirs~~pls~~~~~~~YtC~l~G 159 (211)
T PF02124_consen 84 RVSVRF-EDGYAVCTARCVPRGNVTLRWSVGDDPSPAPA-ATEITGVCAEHPGLVNIRSRRPLSDEDGPVEYTCRLIG 159 (211)
T ss_pred EEEEEe-cCCEEEEEcceeeCCCeEEEEEECCccCCCCC-ceeecCcccCCcceeEeecccCCCccCCceeEEEEEee
Confidence 334433 44567899999887778999998776542111 0000111111234455554422 2244 89998864
No 416
>PHA02914 Immunoglobulin-like domain protein; Provisional
Probab=95.67 E-value=0.54 Score=43.81 Aligned_cols=116 Identities=21% Similarity=0.277 Sum_probs=76.4
Q ss_pred CCCceEEEEeeeCC--C-CCCeeEEEeCCEEccC-----------------CCcEEEc---------cCCcEEEccCCCC
Q psy12061 3 GEGGNVTIFCNPEA--A-PKPKFVWKKDGNIIGS-----------------GGRRKIF---------ENGNLLISPVSRD 53 (626)
Q Consensus 3 ~~G~~~~l~C~~~g--~-p~p~i~W~~~~~~i~~-----------------~~~~~~~---------~~g~L~i~~v~~~ 53 (626)
..|.+|.|.|..+- + ...+++|+-.|-++.+ ++.+.+. .+.+|+|.++..+
T Consensus 277 ~~g~~v~~~c~~s~~~~e~i~~~~w~~t~~~~~~~~g~~~~~~~v~~~~~~~~~~~i~~~~~~s~dlk~STLTIkka~I~ 356 (500)
T PHA02914 277 EVGKRVDIECFFSMCGNENISNAKWIDTGFEIGPLIGTVKSKDIVEGDFAEDDDFMISAHANYSDDLKNSTLTIKKAHIN 356 (500)
T ss_pred ccCcEEEEEEEEeecCCcccccceEEecCCcccceeEEEEecceeecccccCCceEEEEecccccchhhceEEeeeEEEE
Confidence 35999999999843 3 4458999987666531 1222221 1347999999999
Q ss_pred CCEEEEEEEEcCCCCceeeEEEEEEeCCceeeeCCCceEE--ecC-CcEEEEEEecccCCcceeEEEeeCCEEeccc
Q psy12061 54 DSGIYSCTATNVHGMDESKGRLIVLHGPSYYEQLPPKITI--AAH-RNLQLRCSAHTEELLDVAYIWTHNGVRIGNM 127 (626)
Q Consensus 54 d~G~Y~C~a~n~~g~~~~~~~l~v~~~p~~~~~~~~~~~v--~~g-~~~~l~C~~~~~p~p~~~i~W~~~~~~~~~~ 127 (626)
.+|=|.|.|..+.-......-|.|.. +-+.. .+| ......|-+.......+++.|..+|......
T Consensus 357 N~GCY~~~a~~g~~~~ec~~Cl~V~d---------~V~f~W~~e~~n~T~V~Cyv~sy~~kp~si~wkvnGV~~~G~ 424 (500)
T PHA02914 357 NAGCYEAQAFMGKFKEECRHCFKVAD---------HVFFKWNTEGDNETKVACYAAQYDMQPFSILWKSNGVSFGGE 424 (500)
T ss_pred cCCceEEEEecCcchhhhhhheEecc---------EEEEEEEeccCceEEEEEEEEecccCCceeEEEEccEEecCe
Confidence 99999999987766566666666521 11111 133 3455677766653333578999999888654
No 417
>PHA03042 CD47-like protein; Provisional
Probab=95.39 E-value=0.051 Score=47.63 Aligned_cols=71 Identities=20% Similarity=0.265 Sum_probs=47.1
Q ss_pred CCCceEEEEeeeCCC-----CCCeeEEEeCCEEccCCCcEEEccCCcEEEccCCCCCCEEEEEEEEcCCCCceeeEEEEE
Q psy12061 3 GEGGNVTIFCNPEAA-----PKPKFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTATNVHGMDESKGRLIV 77 (626)
Q Consensus 3 ~~G~~~~l~C~~~g~-----p~p~i~W~~~~~~i~~~~~~~~~~~g~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~v 77 (626)
.-.+++.+.|.++.- -.-.+.|+.|+..+-..+.. +..+|.+.... .=.|+|+|.|.+.+.+......|.-
T Consensus 29 ~CN~TV~IpC~v~n~~~~ni~~~~V~Wkf~~~~If~~n~t---n~aSL~~~f~~-~l~GNYTCEv~~l~n~gk~~IeLk~ 104 (286)
T PHA03042 29 TCNKTIVIVCNLNLLIYYNISNIHINWKFNNKVIFKKNNT---NTSSLKFNFSK-NLSGNYTCEAINKFNKIKNTIELQY 104 (286)
T ss_pred ecCceEEEEeecCChhhcCccceEEEEEeCCeeEEEecCC---cceEEEEeccc-cCCCceeEEEeecccCccEEEEEEE
Confidence 457899999999652 24479999999877432221 11346665433 4489999999987666555555544
No 418
>PF06328 Lep_receptor_Ig: Ig-like C2-type domain; InterPro: IPR010457 This entry represents a ligand-binding domain that displays similarity to C2-set immunoglobulin domains (antibody constant domain 2) []. The two cysteine residues form a disulphide bridge.; PDB: 3L5H_A 1P9M_A 1I1R_A 2D9Q_B.
Probab=95.23 E-value=0.078 Score=38.70 Aligned_cols=60 Identities=20% Similarity=0.503 Sum_probs=44.5
Q ss_pred CCCCceEEEEeeeCCC-----CCCeeEEEeCCEEccCCCcEEEccCC--cEEEccCCCCCCEEEEEEE
Q psy12061 2 AGEGGNVTIFCNPEAA-----PKPKFVWKKDGNIIGSGGRRKIFENG--NLLISPVSRDDSGIYSCTA 62 (626)
Q Consensus 2 ~~~G~~~~l~C~~~g~-----p~p~i~W~~~~~~i~~~~~~~~~~~g--~L~i~~v~~~d~G~Y~C~a 62 (626)
+..|+.++..|..... ....|.|+.|+..| +.+++..+.++ +++|.+.+...+-.|.|.-
T Consensus 15 v~lGS~vtasC~l~~~c~~~~~a~~I~Wkln~~~i-P~~qy~~in~~~SsVT~~~~~~~~~~L~cC~l 81 (89)
T PF06328_consen 15 VSLGSNVTASCVLKQNCSHSVNASQIVWKLNGEKI-PGSQYRVINDTVSSVTLPNLNPTGATLFCCKL 81 (89)
T ss_dssp EETTS-EEEEEEE-CCCHCT-STTCEEEECSSCES-TCGCEEEESTTEEEEEESS--SSEEEEEEEEE
T ss_pred EeCCCCEEEEEEEECCCCCCcccceEEEEECCEEC-ChhHcceeCCeEEEEEEccCCCCCceEEEEEE
Confidence 4679999999999543 45699999999955 66788888777 5788888777777888875
No 419
>PHA02982 hypothetical protein; Provisional
Probab=95.04 E-value=0.48 Score=39.81 Aligned_cols=115 Identities=13% Similarity=0.267 Sum_probs=69.7
Q ss_pred CCCceEEEEeeeCCC-CCCeeEEEeCCE-EccC------------------CCcEEEcc---CCcEEEccCCCCCCEEEE
Q psy12061 3 GEGGNVTIFCNPEAA-PKPKFVWKKDGN-IIGS------------------GGRRKIFE---NGNLLISPVSRDDSGIYS 59 (626)
Q Consensus 3 ~~G~~~~l~C~~~g~-p~p~i~W~~~~~-~i~~------------------~~~~~~~~---~g~L~i~~v~~~d~G~Y~ 59 (626)
..|+.|.|+|..... -.....|++++. -+.+ ...+.+.- ..+|+|.++..+..|=|+
T Consensus 37 ~vd~~V~L~C~~~~~~~i~~~~W~~~~~~~la~~~~~~~~iN~~~y~~~~~kd~y~~sv~g~~STLTIkk~~i~N~GCYt 116 (251)
T PHA02982 37 TVDQEVKLQCLFKDADEISRAMWKGDAGFMLAQEANGGTGINAFNYVPGPYKDKYALSVSGNSSTFTMKKPDPQNLGCFT 116 (251)
T ss_pred cCCCcEEEEecCCCcchhhhheeeCCCCeEEEeeecCcceeccccccCCccceeEEEEEeccceeEEeccCCcccCCceE
Confidence 468999999996433 334889998442 2220 01122222 236999999999999999
Q ss_pred EEEEcCCCC-ceeeEEEEEEeCCceeeeCCCceEEecC-CcEEEEEEecccCCcceeEEEeeCCEEecc
Q psy12061 60 CTATNVHGM-DESKGRLIVLHGPSYYEQLPPKITIAAH-RNLQLRCSAHTEELLDVAYIWTHNGVRIGN 126 (626)
Q Consensus 60 C~a~n~~g~-~~~~~~l~v~~~p~~~~~~~~~~~v~~g-~~~~l~C~~~~~p~p~~~i~W~~~~~~~~~ 126 (626)
|.|....+. .....-|.|.....++ ...++ ....+.|-+-....+-+ .|..+|.....
T Consensus 117 c~~ks~~~k~E~c~kCl~V~~~~V~~-------~W~e~nNeT~V~CyVgS~~~dvp--~W~V~GVvttG 176 (251)
T PHA02982 117 CEAKDAEGKEETCEKCLEIQKEDILY-------VVEEHNNETIITCFVGSKHGDVP--RFIVAGIVTTG 176 (251)
T ss_pred EEEecCCCchheeheeeeEecceEEE-------EEEecCCeEEEEEEEEeccCCCc--cEEEeeEEecC
Confidence 999986654 3335556552222111 22333 34566777665443322 79999886543
No 420
>PF09067 EpoR_lig-bind: Erythropoietin receptor, ligand binding; InterPro: IPR015152 Members of this entry include the growth hormone and erythropoietin receptors. The latter interacts with erythropoietin (EPO), with subsequent initiation of the downstream chain of events associated with binding of EPO to the receptor, including EPO-induced erythroblast proliferation and differentiation through induction of the JAK2/STAT5 signalling cascade. The domain adopts a secondary structure composed of a short amino-terminal helix, followed by two beta-sandwich regions []. ; PDB: 3NCB_B 3NCF_B 3NCE_B 3N0P_B 3NCC_B 1BP3_B 3N06_B 3MZG_B 3D48_R 1F6F_C ....
Probab=94.89 E-value=0.12 Score=38.96 Aligned_cols=84 Identities=18% Similarity=0.130 Sum_probs=53.5
Q ss_pred CCCCCceEEEeeeCCCEEEEEEeecCCCCCCCceeeEEEEEEEeccCCccccceeeecCcc-----ceEEecCCCCCceE
Q psy12061 493 PQKPPSAVHIKGINPTTVHVTWRYVSPSFEEEPIIGYKVRVWEVDQDMSRANDTIIPVGNT-----LDADIVDLSPGKRY 567 (626)
Q Consensus 493 p~~~p~~l~~~~~~~~~~~l~W~~~~~~~~~~~i~~Y~i~~~~~~~~~~~~~~~~~~~~~~-----~~~~l~~L~p~~~Y 567 (626)
|++-|.++.....+...++--|+ +.+..+.. +.|.+.|...+....+.........+. ..|.-.+..-...|
T Consensus 7 ~p~~P~~~~C~S~~~etftC~W~--~g~~~~l~-~~y~L~Y~~~~~~~~eCp~~~~~~~ns~~~~~C~F~~~~t~lf~~y 83 (104)
T PF09067_consen 7 PPEKPENLKCFSREMETFTCFWE--PGSEGNLP-TNYTLFYKKEGEEWKECPDYSTSGPNSTVRHICYFPKSDTSLFVPY 83 (104)
T ss_dssp HCCCCEEEEEEBSSSS-EEEEEE--EESSSTST-CEEEEEEEETTSEEEEESESSTTETTEEEEEEEEE-CCGCSSSSEE
T ss_pred CCCCCccCccCCCCCCcEEEEee--CCCCCCCC-CcEEEEEEeCCCCCccCCCeEecCCCCceeEEEEcCCCCeEEEEEE
Confidence 45678899999889999999999 44444433 339998887652211111111112222 33444578888999
Q ss_pred EEEEEEEecCCC
Q psy12061 568 HMRVLAFSNGGD 579 (626)
Q Consensus 568 ~~~V~a~~~~G~ 579 (626)
.++|.|.|..|.
T Consensus 84 ~i~V~a~~~~~~ 95 (104)
T PF09067_consen 84 CIQVEATNALGS 95 (104)
T ss_dssp EEEEEEEETTEE
T ss_pred EEEEEeccCCCc
Confidence 999999998763
No 421
>PHA02982 hypothetical protein; Provisional
Probab=94.89 E-value=0.4 Score=40.24 Aligned_cols=123 Identities=13% Similarity=0.278 Sum_probs=74.9
Q ss_pred ceEEecCCcEEEEEEecccCCcceeEEEeeC-CEEeccc-----cCCcc--------CC--CeeEecCCeEEEeecCCCC
Q psy12061 90 KITIAAHRNLQLRCSAHTEELLDVAYIWTHN-GVRIGNM-----DLNEL--------ET--PNINIDGGLLEITNASFAD 153 (626)
Q Consensus 90 ~~~v~~g~~~~l~C~~~~~p~p~~~i~W~~~-~~~~~~~-----~~~~~--------~~--~~~~~~~~~l~i~~~~~~d 153 (626)
++....++.+.|.|.......- .+..|+++ +..+... .++.. .- ..+....++|+|.++..+.
T Consensus 33 dv~a~vd~~V~L~C~~~~~~~i-~~~~W~~~~~~~la~~~~~~~~iN~~~y~~~~~kd~y~~sv~g~~STLTIkk~~i~N 111 (251)
T PHA02982 33 DVNATVDQEVKLQCLFKDADEI-SRAMWKGDAGFMLAQEANGGTGINAFNYVPGPYKDKYALSVSGNSSTFTMKKPDPQN 111 (251)
T ss_pred hhhccCCCcEEEEecCCCcchh-hhheeeCCCCeEEEeeecCcceeccccccCCccceeEEEEEeccceeEEeccCCccc
Confidence 4566789999999995544332 35689974 4444411 11110 00 1122356799999999999
Q ss_pred CEeEEEEEEeCCCceEEEEEEEEeCCCCCCCceEEEEEeccceEEEEecCCCCCCcccEEEEEEeecCCCCceEee
Q psy12061 154 AGEYECVVKSTVGKISTKTTVIVEGPPGLPGGVQVVEVHKTSATIQWTDGATNGRPITHYKIIARTNWNSTWFNVS 229 (626)
Q Consensus 154 ~g~Y~C~a~n~~g~~~~~~~l~v~~~P~~p~~~~~~~~~~~~~~l~W~~~~~~~~~~~~y~v~~~~~~~~~w~~~~ 229 (626)
.|=|+|.+....+..+.- -+|..+..+.+.+.|.. .++...+.-|..++..+ -..|...+
T Consensus 112 ~GCYtc~~ks~~~k~E~c--------------~kCl~V~~~~V~~~W~e-~nNeT~V~CyVgS~~~d-vp~W~V~G 171 (251)
T PHA02982 112 LGCFTCEAKDAEGKEETC--------------EKCLEIQKEDILYVVEE-HNNETIITCFVGSKHGD-VPRFIVAG 171 (251)
T ss_pred CCceEEEEecCCCchhee--------------heeeeEecceEEEEEEe-cCCeEEEEEEEEeccCC-CccEEEee
Confidence 999999998876654321 12445556788999995 34445555555554433 13565543
No 422
>PF03921 ICAM_N: Intercellular adhesion molecule (ICAM), N-terminal domain; InterPro: IPR013768 Intercellular adhesion molecules (ICAMs) and vascular cell adhesion molecule-1 (VCAM-1) are part of the immunoglobulin superfamily. They are important in inflammation, immune responses and in intracellular signalling events []. The ICAM family consists of five members, designated ICAM-1 to ICAM-5. They are known to bind to leucocyte integrins CD11/CD18 during inflammation and in immune responses. In addition, ICAMs may exist in soluble forms in human plasma, due to activation and proteolysis mechanisms at cell surfaces. ICAM-1 (CD54) contains five Ig-like domains. It is expressed on leucocytes, endothelial and epithelial cells, and is upregulated in response to bacterial invasion. The protein is a ligand for lymphocyte-function associated (LFA) antigens and also a receptor for CD11a,b/CD18, fibrinogen, human rhinovirus and Plasmodium falciparum-infected erythrocytes. ICAM-1 binding sites for CD11a/CD18 and its other binding partners are located in the first domain and are overlapping. ICAM-1 domain 2 seems to play an important role in maintaining the conformation of domain 1 and particularly the structural integrity of the LFA-1 ligand-binding site []. The 3-dimensional atomic structure of the tandem N-terminal Ig-like domains (D1 and D2) of ICAM-1 has been determined to 2.2A resolution and fitted into a cryoelectron microscopy reconstruction of a rhinovirus-ICAM-1 complex []. Extensive charge interactions between ICAM-1 and human rhinovirusesare largely conserved in major and minor receptor groups of rhinoviruses. The interaction of ICAMs with LFA-1 is mediated by a divalent cation bound to the insertion (I)-domain on the alpha chain of LFA-1 and the carboxyl group of a conserved glutamic acid residue on ICAMs. ICAM-2 (CD102) has two Ig-like domains. It is expressed on endothelial cells, leucocytes and platelets, and binds to CD11a'b/CD18. The protein is refractory to proinflammatory cytokines, and plays an important role in the adhesion of leucocytes to the uninduced endothelium []. ICAM-3 (CD50) contains five Ig-like domains and binds to leucocyte integrins CD11a'd/CD18. The protein plays an important role in the immune response and perhaps in signal transduction []. ICAM-4 (LW blood group Ag) is red blood cell (RBC) specific and binds to CD11a'b/CD18. It is associated with the RBC Rh antigens and could be important in retaining immature red cells in the bone marrow, or in the uptake of senescent cells into the spleen []. ICAM-5 (telencephalin) has nine Ig-like domains and is confined to the telencephalon of the brain. The role of this CD11a/CD18 binding molecule is not yet known []. VCAM-1 was first described as a cytokine-inducible endothelial adhesion molecule. It can bind to leucocyte integrin VL-4 (very late antigen-4) to recruit leucocytes to sites of inflammation []. The predominant form of VCAM-1 in vivo has an N-terminal extracellular region comprising seven Ig-like domains []. A conserved integrin-binding motif has been identified in domains 1 and 4, variants of which are present in the N-terminal domain of all members of the integrin-binding subgroup of the immunoglobulin superfamily. The structure of a VLA-4-binding fragment comprising the first two domains of VCAM-1 has been determined to 1.8A resolution. The integrin-binding motif is exposed and forms the N-terminal region of the loop between beta-strands C and D of domain 1 []. VCAM-1 domains 1 and 2 are structurally similar to ICAM-1 and ICAM-2 []. This entry represents the N-terminal domain of ICAM proteins such as ICAM-2, ICAM-3 and ICAM-4.; PDB: 3BN3_B 1T0P_B 1ZXQ_A 3TCX_A 1MQ8_A 1Z7Z_I 1IC1_A 1IAM_A.
Probab=94.68 E-value=0.38 Score=35.03 Aligned_cols=80 Identities=13% Similarity=0.198 Sum_probs=52.2
Q ss_pred CCCceEEecCCcEEEEEEecccCCcceeEEEeeC--CEEeccccCCccCCCeeEecCCeEEEeecCCCCCEeEEEEEEeC
Q psy12061 87 LPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHN--GVRIGNMDLNELETPNINIDGGLLEITNASFADAGEYECVVKST 164 (626)
Q Consensus 87 ~~~~~~v~~g~~~~l~C~~~~~p~p~~~i~W~~~--~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~a~n~ 164 (626)
-|+...|..|+++.+.|...... |. .+-|... ...+... .....+.|.+++. | ..-.|.+.-.
T Consensus 9 ~P~~~vV~~G~Sv~VNCStsC~~-p~-~~GLET~L~k~~~~~g-----------~~W~~f~LsnV~~-d-s~~~C~~~C~ 73 (91)
T PF03921_consen 9 SPEEPVVPPGGSVWVNCSTSCPQ-PE-KIGLETSLSKTELDSG-----------PQWKAFQLSNVTE-D-SSPLCFFNCS 73 (91)
T ss_dssp ESSEEEEETTEEEEEEEEESSSS--S-EEEEESSSEEEEEEEE-----------TTEEEEEEEEE-S-C-EEEEEEEEET
T ss_pred ECCccEECCCCCEEEEEcCCCCC-CC-cceEEEecCCcccCCC-----------CcEEEEEEEcccc-C-CeEEEEEEcC
Confidence 57788999999999999986543 32 2344432 2222111 1234788899975 4 6788999877
Q ss_pred CCceEEEEEEEEeCCCC
Q psy12061 165 VGKISTKTTVIVEGPPG 181 (626)
Q Consensus 165 ~g~~~~~~~l~v~~~P~ 181 (626)
..+..+++.|+|+.+|.
T Consensus 74 g~Q~~~~~~ItVY~~Pe 90 (91)
T PF03921_consen 74 GEQSSASANITVYKPPE 90 (91)
T ss_dssp TEEEEEEEEEEEEB--S
T ss_pred CeEEEeEEeeEEeCCCC
Confidence 66778899999998874
No 423
>PF11465 Receptor_2B4: Natural killer cell receptor 2B4; InterPro: IPR024303 2B4 is a transmembrane receptor which is expressed primarily on natural killer (NK) cells. It plays a role in activating NK-mediated cytotoxicity through its interaction with CD48 on target cells in a subset of CD8 T cells []. The structure of 2B4 consists of an immunoglobulin variable domain fold and contains two beta-sheets. One of the beta-sheets, the six-stranded sheet, contains structural features that may have a role in ligand recognition and receptor function []. This entry represents the 2B4 immunoglobulin domain.; GO: 0005488 binding; PDB: 2PTU_D 2PTT_B 1Z2K_A.
Probab=94.65 E-value=0.15 Score=37.78 Aligned_cols=36 Identities=33% Similarity=0.359 Sum_probs=27.5
Q ss_pred CCcEEEccCCCCCCEEEEEEEEcCCCCce-eeEEEEE
Q psy12061 42 NGNLLISPVSRDDSGIYSCTATNVHGMDE-SKGRLIV 77 (626)
Q Consensus 42 ~g~L~i~~v~~~d~G~Y~C~a~n~~g~~~-~~~~l~v 77 (626)
+-+|.|..++..|+|.|...+.+..|... ..+.+.|
T Consensus 70 nlaLlIkaAq~qDSG~Y~LEvT~~sG~V~~~~FqVsV 106 (108)
T PF11465_consen 70 NLALLIKAAQPQDSGLYCLEVTNESGKVCTKNFQVSV 106 (108)
T ss_dssp TTEEEESS-SGGG-EEEEEEEEETTSCEEEEEEEEEE
T ss_pred CceEEEeecCcccCceEEEEEEcCCCcEEEEEEEEEe
Confidence 45799999999999999999999988853 3355555
No 424
>PHA03042 CD47-like protein; Provisional
Probab=94.33 E-value=0.26 Score=43.41 Aligned_cols=71 Identities=14% Similarity=0.291 Sum_probs=48.5
Q ss_pred cCCcEEEEEEeccc---CCcceeEEEeeCCEEeccccCCccCCCeeEecCCeEEEeecCCCCCEeEEEEEEeCCCceEEE
Q psy12061 95 AHRNLQLRCSAHTE---ELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEITNASFADAGEYECVVKSTVGKISTK 171 (626)
Q Consensus 95 ~g~~~~l~C~~~~~---p~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~a~n~~g~~~~~ 171 (626)
=.+++.+.|.+..- ...++.+.|+.|++.+-..+ +. +..+|.+... ..-.|+|+|.|.+........
T Consensus 30 CN~TV~IpC~v~n~~~~ni~~~~V~Wkf~~~~If~~n------~t---n~aSL~~~f~-~~l~GNYTCEv~~l~n~gk~~ 99 (286)
T PHA03042 30 CNKTIVIVCNLNLLIYYNISNIHINWKFNNKVIFKKN------NT---NTSSLKFNFS-KNLSGNYTCEAINKFNKIKNT 99 (286)
T ss_pred cCceEEEEeecCChhhcCccceEEEEEeCCeeEEEec------CC---cceEEEEecc-ccCCCceeEEEeecccCccEE
Confidence 46899999998763 12346789999999886542 11 3345666553 345899999998876666666
Q ss_pred EEEE
Q psy12061 172 TTVI 175 (626)
Q Consensus 172 ~~l~ 175 (626)
++|.
T Consensus 100 IeLk 103 (286)
T PHA03042 100 IELQ 103 (286)
T ss_pred EEEE
Confidence 6655
No 425
>PHA03282 envelope glycoprotein E; Provisional
Probab=94.26 E-value=2.5 Score=40.58 Aligned_cols=28 Identities=25% Similarity=0.476 Sum_probs=23.1
Q ss_pred cCCcEEEccCCCCCCEEEEEEEEcCCCC
Q psy12061 41 ENGNLLISPVSRDDSGIYSCTATNVHGM 68 (626)
Q Consensus 41 ~~g~L~i~~v~~~d~G~Y~C~a~n~~g~ 68 (626)
.|++|.|.+++.+|+|.|...+......
T Consensus 122 ~n~tl~l~~a~~~DsG~Y~L~~~~~~~~ 149 (540)
T PHA03282 122 VNGTLVLREARETDSGMYVLSVSRAPNS 149 (540)
T ss_pred ecceEEEeeccccCCceEEEEecCCCCc
Confidence 4788999999999999999997544333
No 426
>cd05719 Ig2_PVR_like Second immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins. Ig2_PVR_like: domain similar to the second immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), these result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus
Probab=94.18 E-value=0.19 Score=37.47 Aligned_cols=69 Identities=12% Similarity=0.070 Sum_probs=37.5
Q ss_pred CCcEEEEEEec-ccCCcceeEEEeeCCEEeccccCCccCCCeeEecCCeEEEeecCCCCCEeEEEEEEeCCCc
Q psy12061 96 HRNLQLRCSAH-TEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEITNASFADAGEYECVVKSTVGK 167 (626)
Q Consensus 96 g~~~~l~C~~~-~~p~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~a~n~~g~ 167 (626)
.....+.|.+. +.|.+ +|+|+++............ ......-.+.|.+......|.-.|+|++.+..-.
T Consensus 15 ~~~~va~C~s~~gkP~a--~ItW~~~~~~~~~~~~~~~-~~g~~tv~S~l~~~p~~~d~G~~~tC~v~h~~l~ 84 (95)
T cd05719 15 EPVTVATCVSANGKPPA--TISWETTLGGEAETQSKEN-PNGTVTVTSEYRLVPSREANGKELTCVVSHPTLQ 84 (95)
T ss_pred CccEEEEEECCCCcCCC--EEEEEeCCCCcceeEeecC-CCCCEEEEEEEEEecCHHHCCCEEEEEEeCcccC
Confidence 34678899985 56655 5699997111110000000 0111112345666555555566999999887643
No 427
>cd07704 Ig2_Nectin-3-4_like Second immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3), nectin-4 (poliovirus receptor related protein 4) and similar proteins. Ig2_Nectin-3-4_like: domain similar to the second immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3) and nectin-4 (poliovirus receptor related protein 4). Nectin-3 and nectin-4 belong to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectin-2 and nectin-3 localize at Sertoli-spermatid junctions where they form heterophilic trans-interactions between the cells that are essential for the formation and maintenance of the junctions and for spermatid development. Nect
Probab=94.03 E-value=0.39 Score=35.64 Aligned_cols=74 Identities=16% Similarity=0.199 Sum_probs=42.8
Q ss_pred CceEEecCCcEEE-EEEecc-cCCcceeEEEeeCCEEeccccCCccCCCeeEecCCeEEEeecCCCCCEeEEEEEEeCC
Q psy12061 89 PKITIAAHRNLQL-RCSAHT-EELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEITNASFADAGEYECVVKSTV 165 (626)
Q Consensus 89 ~~~~v~~g~~~~l-~C~~~~-~p~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~a~n~~ 165 (626)
....+..|+.+.+ .|.+.+ .|.+ .|.|+.+.............++ ...-.+.|.+......|.-.++|.+....
T Consensus 9 ~~~~~~~g~~~~vA~C~sa~gkPaa--~IsW~~~~~G~~~~~~~~~~ng-T~TV~S~~~l~p~r~d~G~~vtC~V~H~a 84 (97)
T cd07704 9 PSLLIDGGNGTTLAACCAAEGRPAA--DVTWETNVYGTSESHSQEHPNG-TTTVTSEYIWVPSRHANGHPLTCVVSHPA 84 (97)
T ss_pred CeeEeecCcceeEEEEEccCCccCC--EeEEeCCCCCccceeeecCCCC-CEEEEEEEEEEeCHHHCCcEEEEEEeCcc
Confidence 4456788999999 888765 4444 6699987332221100000111 22233456665555566779999998653
No 428
>PF11465 Receptor_2B4: Natural killer cell receptor 2B4; InterPro: IPR024303 2B4 is a transmembrane receptor which is expressed primarily on natural killer (NK) cells. It plays a role in activating NK-mediated cytotoxicity through its interaction with CD48 on target cells in a subset of CD8 T cells []. The structure of 2B4 consists of an immunoglobulin variable domain fold and contains two beta-sheets. One of the beta-sheets, the six-stranded sheet, contains structural features that may have a role in ligand recognition and receptor function []. This entry represents the 2B4 immunoglobulin domain.; GO: 0005488 binding; PDB: 2PTU_D 2PTT_B 1Z2K_A.
Probab=93.92 E-value=0.51 Score=35.07 Aligned_cols=68 Identities=18% Similarity=0.168 Sum_probs=43.2
Q ss_pred EEEEEEecccCCccee--EEEeeCCEEeccccCCccCCCeeEecCCeEEEeecCCCCCEeEEEEEEeCCCce
Q psy12061 99 LQLRCSAHTEELLDVA--YIWTHNGVRIGNMDLNELETPNINIDGGLLEITNASFADAGEYECVVKSTVGKI 168 (626)
Q Consensus 99 ~~l~C~~~~~p~p~~~--i~W~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~a~n~~g~~ 168 (626)
..+.+...-...+... ++|..+........ ..+.-.+...+-.|.|..++..|+|.|...+.+..|..
T Consensus 28 ~sv~WK~~l~s~~~~~~IltW~n~~~~~~~~~--~n~r~~F~~enlaLlIkaAq~qDSG~Y~LEvT~~sG~V 97 (108)
T PF11465_consen 28 YSVQWKMQLPSQKKFEVILTWKNDSTPSYNSS--FNNRFNFTSENLALLIKAAQPQDSGLYCLEVTNESGKV 97 (108)
T ss_dssp EEEEEEEEETSSSEEE-EEEEETTEEEESSTT--HHHHEEEETTTTEEEESS-SGGG-EEEEEEEEETTSCE
T ss_pred EEEEEEEEcccCCceEEEEEEcCCCccccccc--ccceEeeeccCceEEEeecCcccCceEEEEEEcCCCcE
Confidence 3466655543333333 56776665554321 11123344578899999999999999999999999986
No 429
>KOG1026|consensus
Probab=93.77 E-value=0.14 Score=52.96 Aligned_cols=157 Identities=16% Similarity=0.180 Sum_probs=97.3
Q ss_pred CCCCceEEEEeeeCCCCCCeeEEEeCCEEccCCCcE-EEccCCcEEEccCCCCCCEEEEEEEEcCCCCceeeEEEEEEeC
Q psy12061 2 AGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRR-KIFENGNLLISPVSRDDSGIYSCTATNVHGMDESKGRLIVLHG 80 (626)
Q Consensus 2 ~~~G~~~~l~C~~~g~p~p~i~W~~~~~~i~~~~~~-~~~~~g~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~ 80 (626)
+..|..+++.|.+.+.|-|.+.|+.++......... .+..+-...+.+ +.|.+.|..|.....+.+.+..+
T Consensus 204 v~~~~~~~~~c~~~~~~vp~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~--------~~c~~E~~~~~~~~~v~~~~~~p 275 (774)
T KOG1026|consen 204 VEEGSSITLKCSQAGIPVPCHYWFPNCLASSNTNQTSSLCRSECEVLEN--------DLCIAENAVARSNPSILLVVDLP 275 (774)
T ss_pred hcccchheeeeecccCCCcceeeecccccccCCCcccccccccceeeec--------hhhHHHHhhhhcCceeeeEEecc
Confidence 567899999999999999999999987766542211 111111222222 89999999999888888877665
Q ss_pred CceeeeC-CCceEEecCCcEEEEEEec---ccCCcceeEEEeeCCEEeccccCCccCCCeeEecC--CeEEEeecCCCCC
Q psy12061 81 PSYYEQL-PPKITIAAHRNLQLRCSAH---TEELLDVAYIWTHNGVRIGNMDLNELETPNINIDG--GLLEITNASFADA 154 (626)
Q Consensus 81 p~~~~~~-~~~~~v~~g~~~~l~C~~~---~~p~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~--~~l~i~~~~~~d~ 154 (626)
+...... +.+. .=.|... ++|.+ ..+|..++..+...+.. ...... .-+.....+-.+.
T Consensus 276 ~~~~~~~~~~~~--------~~~C~~~~~~~~~~~--~~~~~~~~~~~~~~g~~-----~~t~s~~~~C~~~~~~~h~~~ 340 (774)
T KOG1026|consen 276 KAEVLLCSPLSD--------HHNCIPIGITANPGP--ALHWCYNGSGLNYRGTV-----CVTKSGKEQCLPWNDPPHSHN 340 (774)
T ss_pred cccccCCCCccc--------cCceeeeeccCCCCC--ceeeeecCccceEeccc-----ccccccCcCCcccCcCccccc
Confidence 4433211 1111 2223322 34444 33798887776543211 111111 3333334456788
Q ss_pred EeEEEEEEeCCCceEEEEEEEEeCCCC
Q psy12061 155 GEYECVVKSTVGKISTKTTVIVEGPPG 181 (626)
Q Consensus 155 g~Y~C~a~n~~g~~~~~~~l~v~~~P~ 181 (626)
|.|.|++.+..|.........+...|.
T Consensus 341 ~~~~~~~e~~~g~~~~r~~g~~~~~P~ 367 (774)
T KOG1026|consen 341 GNYTLFPELPGGKNYCRNPGGFMSRPW 367 (774)
T ss_pred CcceeeecccCccccccCcCccccCCC
Confidence 999999999999887777666666663
No 430
>KOG4806|consensus
Probab=93.77 E-value=1.5 Score=40.26 Aligned_cols=124 Identities=19% Similarity=0.240 Sum_probs=69.7
Q ss_pred CcceeEEEEEEEEecCCCCCCCCccEEEE---ccCCCCCCCCCceEEEee--ecceEEEEeeeccccccccceeeEEEEE
Q psy12061 356 EFYYTEYEVKVQAINDVGPGPESEVVTIF---SAEDMPQVAPQGVFSRGF--NSTAINVTWNPIELIRENIRGRLIGHRI 430 (626)
Q Consensus 356 L~p~~~Y~~~v~a~n~~g~~~~s~~~~~~---t~~~~p~~~p~~~~~~~~--~~~si~l~W~~~~~~~~~~~~~i~~Y~v 430 (626)
+.++..|.++++..|....- ....+... |..+.|. -|++.++..+ +.++.+|.|.-..+.. ..|.|
T Consensus 291 v~~~~~~~~rf~~~ndde~~-~~v~V~aSt~~t~~~~P~-LP~dTtVk~v~r~CSsAtIaW~gs~d~~-------~kyCI 361 (454)
T KOG4806|consen 291 VLPGERYLMRFEPSNDDEAL-QKVMVAASTEATFRDLPE-LPQDTTVKNVRRRCSSATIAWNGSPDEE-------LKYCI 361 (454)
T ss_pred ecCCCceEEEEEecCCchhh-heeEeeeecccccCcCCC-CCCCceEeeeccccchheeeeccCcchh-------eeEEE
Confidence 45778899999988865421 11111122 2234555 6777766654 5678999998655431 24666
Q ss_pred EEEecCCCcc------------------ceE---EEEe------cCccceEEEeCCccCceEEEEEEEeeCCCCCCCCcc
Q psy12061 431 KYWKEDNPEE------------------TAV---YYLS------RTTRNWALIVGLQPDTKYYVKVMAYNNAGEGPESER 483 (626)
Q Consensus 431 ~~~~~~~~~~------------------~~~---~~~~------~~~~~~~~i~~L~p~t~Y~v~V~a~~~~g~s~~s~~ 483 (626)
+.......+. ... +... ..+-..-+|.+|.|+..|.+-|.|.-..|..-+-..
T Consensus 362 y~~~~~~~e~~v~~~~N~C~g~~~~~~s~~v~c~y~hs~~~q~~~~~i~teTI~gL~PgssYlldv~a~~~~g~~lpyqa 441 (454)
T KOG4806|consen 362 YVFNLPQRERSVVDFTNYCMGFVPKRVSQYVYCEYMHSRERQQSPDNIETETILGLMPGSSYLLDVTANLSMGKPLPYQA 441 (454)
T ss_pred EEecccchhhhhhhhhccccCccccceeEEEeEEEecChhhhcchhhhhhhhhcccccCceEEEEEEEcccCCcccccee
Confidence 6544332110 000 0111 001123468899999999999999887776443333
Q ss_pred EEEee
Q psy12061 484 YLERT 488 (626)
Q Consensus 484 ~~~~t 488 (626)
+.+.|
T Consensus 442 ~~v~t 446 (454)
T KOG4806|consen 442 LTVHT 446 (454)
T ss_pred EEEEe
Confidence 44443
No 431
>COG4733 Phage-related protein, tail component [Function unknown]
Probab=93.67 E-value=0.91 Score=46.96 Aligned_cols=130 Identities=17% Similarity=0.137 Sum_probs=69.0
Q ss_pred ecCccceEEEeCCccCceEEEEEEEeeCCCCC-CCCccEEEeec-CCCCCCCCceEEEeeeCCCEEEEEEeecCCCCCCC
Q psy12061 447 SRTTRNWALIVGLQPDTKYYVKVMAYNNAGEG-PESERYLERTY-RKAPQKPPSAVHIKGINPTTVHVTWRYVSPSFEEE 524 (626)
Q Consensus 447 ~~~~~~~~~i~~L~p~t~Y~v~V~a~~~~g~s-~~s~~~~~~t~-~~~p~~~p~~l~~~~~~~~~~~l~W~~~~~~~~~~ 524 (626)
.......+.+.+|-+ ..|.++|+|.|..|.. ++.....|... ...|+..+..+...... -.+.|.|- .|. ..-
T Consensus 655 ~rt~~~~~~~~gi~~-GqY~i~VrAiN~~g~~~~~a~s~~f~i~g~~~Ppp~~~t~~a~~it-~~~~l~v~--dPt-~~~ 729 (952)
T COG4733 655 PRTSAAGFDVEGIPA-GQYAIRVRAINVFEPNSPDATAYEFALNGKKVPPPKAMIYDAVIIT-LVIRLVVG--DPT-GAV 729 (952)
T ss_pred ccccccceeecCcCc-cceEEEEEEeeccCCCCCCcceeEEEecCCCCCCCcccccceEEEE-eeeeEEEe--cCC-cce
Confidence 344455688999988 6999999999998864 33324444333 23333333333333222 35677887 332 222
Q ss_pred ceeeEEEEEEEeccCCccccceeeecCccceEEecCCCCCceEEEEEEEEecCCCCCCC
Q psy12061 525 PIIGYKVRVWEVDQDMSRANDTIIPVGNTLDADIVDLSPGKRYHMRVLAFSNGGDGRMS 583 (626)
Q Consensus 525 ~i~~Y~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~p~~~Y~~~V~a~~~~G~g~~s 583 (626)
.+..=.+++ ....+.... ....-........-.+|++|..|.|+++++|..|...+-
T Consensus 730 d~~~sei~~-s~~~d~~~~-Ar~LG~~~~~~~~~~~i~~g~~~~F~~R~Vn~vG~~~~~ 786 (952)
T COG4733 730 DITSTEIRS-AVIADGNFQ-ARSLGNLNYPGLFSVGIQAGLTFWFRNRNVDLVGNNDKW 786 (952)
T ss_pred EEeeeeeee-eccccchhH-HhhhhccccccccccCcCCCceEEEEeeecccccccccc
Confidence 222222221 111111110 001111111111115999999999999999999976644
No 432
>cd07703 Ig2_Nectin-2_like Second immunoglobulin (Ig) domain of nectin-2 (also known as poliovirus receptor related protein 2 or CD112) and similar proteins. Ig2_Nectin-2_like: domain similar to the second immunoglobulin (Ig) domain of nectin-2 (also known as poliovirus receptor related protein 2 or CD112). Nectin-2 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectin-2 and nectin-3 localize at Sertoli-spermatid junctions where they form heterophilic trans-interactions between the cells that are essential for the formation and maintenance of the junctions and for spermatid development.
Probab=93.57 E-value=0.27 Score=36.51 Aligned_cols=71 Identities=10% Similarity=0.040 Sum_probs=38.2
Q ss_pred CcEEEEEEecc-cCCcceeEEEeeCCEEeccccCCccCCCeeEecCCeEEEeecCCCCCEeEEEEEEeCCCceEE
Q psy12061 97 RNLQLRCSAHT-EELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEITNASFADAGEYECVVKSTVGKIST 170 (626)
Q Consensus 97 ~~~~l~C~~~~-~p~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~a~n~~g~~~~ 170 (626)
....+.|.+.+ .|.+ .|+|+++......... .........-.+.|.+......|.-.|+|++.+..-....
T Consensus 16 ~~~va~C~s~~gkPaa--~IsW~~~~~g~~~~~~-~~~~~gt~tv~S~l~~~P~~~d~Gk~ltC~v~h~al~~~~ 87 (95)
T cd07703 16 PVPVAKCVSANGRPPA--RISWSSTLGGNANTTS-KENGDGTVTVTSEYSLVPTPEANGKEVTCKVEHETLQEPQ 87 (95)
T ss_pred ccEEEEEEcCCCCCCc--EEEEEcCCCCCeeEEE-EeCCCCCEEEEEEEEEecCHHHCCCEEEEEEeCcccCCCe
Confidence 46889998775 5544 6699997221111000 0000111112235666555555666999999987644333
No 433
>PF06328 Lep_receptor_Ig: Ig-like C2-type domain; InterPro: IPR010457 This entry represents a ligand-binding domain that displays similarity to C2-set immunoglobulin domains (antibody constant domain 2) []. The two cysteine residues form a disulphide bridge.; PDB: 3L5H_A 1P9M_A 1I1R_A 2D9Q_B.
Probab=93.57 E-value=1.2 Score=32.51 Aligned_cols=66 Identities=18% Similarity=0.301 Sum_probs=40.7
Q ss_pred CCceEEecCCcEEEEEEecccCC---cceeEEEeeCCEEeccccCCccCCCeeEecCC--eEEEeecCCCCCEeEEEE
Q psy12061 88 PPKITIAAHRNLQLRCSAHTEEL---LDVAYIWTHNGVRIGNMDLNELETPNINIDGG--LLEITNASFADAGEYECV 160 (626)
Q Consensus 88 ~~~~~v~~g~~~~l~C~~~~~p~---p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~--~l~i~~~~~~d~g~Y~C~ 160 (626)
|+...+..|+++++.|....... ..-.|.|+.|+..+..+ ....++++ .+++.++....+-.|-|.
T Consensus 10 p~~pvv~lGS~vtasC~l~~~c~~~~~a~~I~Wkln~~~iP~~-------qy~~in~~~SsVT~~~~~~~~~~L~cC~ 80 (89)
T PF06328_consen 10 PPSPVVSLGSNVTASCVLKQNCSHSVNASQIVWKLNGEKIPGS-------QYRVINDTVSSVTLPNLNPTGATLFCCK 80 (89)
T ss_dssp CSSSEEETTS-EEEEEEE-CCCHCT-STTCEEEECSSCESTCG-------CEEEESTTEEEEEESS--SSEEEEEEEE
T ss_pred cCCCEEeCCCCEEEEEEEECCCCCCcccceEEEEECCEECChh-------HcceeCCeEEEEEEccCCCCCceEEEEE
Confidence 45567899999999999986533 33467999999977664 33334444 455555544444466665
No 434
>PF07495 Y_Y_Y: Y_Y_Y domain; InterPro: IPR011123 This region is mostly found at the end of the beta propellers (IPR011110 from INTERPRO) in a family of two component regulators. However they are also found tandemly repeated in Q891H4 from SWISSPROT without other signal conduction domains being present. It is named after the conserved tyrosines found in the alignment. The exact function is not known.; PDB: 3V9F_D 3VA6_B 3OTT_B 4A2M_D 4A2L_B.
Probab=93.43 E-value=0.51 Score=32.31 Aligned_cols=28 Identities=32% Similarity=0.491 Sum_probs=21.0
Q ss_pred eEEecCCCCCceEEEEEEEEecCCCCCCC
Q psy12061 555 DADIVDLSPGKRYHMRVLAFSNGGDGRMS 583 (626)
Q Consensus 555 ~~~l~~L~p~~~Y~~~V~a~~~~G~g~~s 583 (626)
.+.+.+|.||+ |.|.|+|.+..|.....
T Consensus 30 ~~~~~~L~~G~-Y~l~V~a~~~~~~~~~~ 57 (66)
T PF07495_consen 30 SISYTNLPPGK-YTLEVRAKDNNGKWSSD 57 (66)
T ss_dssp EEEEES--SEE-EEEEEEEEETTS-B-SS
T ss_pred EEEEEeCCCEE-EEEEEEEECCCCCcCcc
Confidence 89999999997 99999999998765544
No 435
>COG4733 Phage-related protein, tail component [Function unknown]
Probab=92.97 E-value=1.4 Score=45.68 Aligned_cols=124 Identities=12% Similarity=0.037 Sum_probs=62.5
Q ss_pred eeEEEEeeccCCceEEEEEEEecCCccCCCCCCCCccc-CCCCCCCCCCceeEeecCCcCeEEEEEeeCCCCCcccCcce
Q psy12061 244 KEASIENVLVPWSTYEFKVIAGNELGYGEPSSPSPQYN-TPADKPYQAPSRIGGGGGKIGDLSISWEPLPREKQNAPNIY 322 (626)
Q Consensus 244 ~~~~i~~~l~~~~~y~~~v~a~n~~g~~~~s~~~~~~~-~~~~~p~~~p~~~~~~~~~~~~v~l~W~~~~~~~~~~~~~~ 322 (626)
..+.+.+ +.+ ..|..+|+|.|..|.......+..+. ..+..|+..+..+...... -.+.+.|-- |. ....+..
T Consensus 660 ~~~~~~g-i~~-GqY~i~VrAiN~~g~~~~~a~s~~f~i~g~~~Ppp~~~t~~a~~it-~~~~l~v~d--Pt-~~~d~~~ 733 (952)
T COG4733 660 AGFDVEG-IPA-GQYAIRVRAINVFEPNSPDATAYEFALNGKKVPPPKAMIYDAVIIT-LVIRLVVGD--PT-GAVDITS 733 (952)
T ss_pred cceeecC-cCc-cceEEEEEEeeccCCCCCCcceeEEEecCCCCCCCcccccceEEEE-eeeeEEEec--CC-cceEEee
Confidence 3455655 666 78999999999998665444222222 2333343333333332221 345566654 21 1111222
Q ss_pred EEEEEEecCCCcceeeeeeeecceeeEEEEeCCCcceeEEEEEEEEecCCCCCC
Q psy12061 323 YKIFWRKKNDTEFQSETLKEYGNVGIAVVRIPSEFYYTEYEVKVQAINDVGPGP 376 (626)
Q Consensus 323 y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~p~~~Y~~~v~a~n~~g~~~ 376 (626)
-.+++....+...... ...+.......-.+|.++..|.|+++++|..|...
T Consensus 734 sei~~s~~~d~~~~Ar---~LG~~~~~~~~~~~i~~g~~~~F~~R~Vn~vG~~~ 784 (952)
T COG4733 734 TEIRSAVIADGNFQAR---SLGNLNYPGLFSVGIQAGLTFWFRNRNVDLVGNND 784 (952)
T ss_pred eeeeeeccccchhHHh---hhhccccccccccCcCCCceEEEEeeecccccccc
Confidence 2222222222211100 01111111122257999999999999999999754
No 436
>PF09240 IL6Ra-bind: Interleukin-6 receptor alpha chain, binding; InterPro: IPR015321 Members of this entry adopt a structure consisting of an immunoglobulin-like beta-sandwich, with seven strands in two beta-sheets, in a Greek-key topology. They are required for binding to the cytokine Interleukin-6 []. ; PDB: 1N26_A 1P9M_C 3LB6_C 1PVH_A 3L5H_A 1BQU_A 1I1R_A 3QT2_B 3BPN_C 3BPO_C ....
Probab=92.72 E-value=2.4 Score=31.93 Aligned_cols=83 Identities=16% Similarity=0.152 Sum_probs=53.6
Q ss_pred CceEEEeeeCCCEEEEEEeecCCCCCCCceeeEEEEEEEeccCCccccceeeec-CccceEEecCCCC----CceEEEEE
Q psy12061 497 PSAVHIKGINPTTVHVTWRYVSPSFEEEPIIGYKVRVWEVDQDMSRANDTIIPV-GNTLDADIVDLSP----GKRYHMRV 571 (626)
Q Consensus 497 p~~l~~~~~~~~~~~l~W~~~~~~~~~~~i~~Y~i~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~L~p----~~~Y~~~V 571 (626)
|++|+....+...+.-+|.+ -.... .-+.|.++|+................ +......+..... ...|.|.|
T Consensus 2 ~~nlsC~~~~~~~m~CtW~~--g~~~~-~~t~y~L~~~~~~~~~~~eC~~y~~~~~~~~gC~~~~~~~~~~~~~~~~v~V 78 (99)
T PF09240_consen 2 PQNLSCFIYNLEYMNCTWEP--GKEAP-PDTQYTLYYWYSPLEEEKECPHYSKDSGTRIGCQFPVSEIDSSEFSQYNVCV 78 (99)
T ss_dssp -EEEEEEEETTTEEEEEEEC--CTTCS-TTEEEEEEEEETTSSSEEEESEEEESTSSEEEEEEESCTT-TTTTSEEEEEE
T ss_pred CeeCEEEEECCEEEEEEECC--CCCCC-CcccEEEEEEcCCCCccccCCCccccCCceeEEEecCCCccccccceEEEEE
Confidence 67899888899999999983 22222 33579999888664322222222222 3456666666555 24799999
Q ss_pred EEEecCCCCCC
Q psy12061 572 LAFSNGGDGRM 582 (626)
Q Consensus 572 ~a~~~~G~g~~ 582 (626)
.+.+..|.-..
T Consensus 79 ~~ss~~~~i~~ 89 (99)
T PF09240_consen 79 NGSSSAGSIRS 89 (99)
T ss_dssp EEEETTEEEEC
T ss_pred EeccCCCccCC
Confidence 99998775543
No 437
>KOG4597|consensus
Probab=92.67 E-value=0.16 Score=48.27 Aligned_cols=86 Identities=16% Similarity=0.180 Sum_probs=61.6
Q ss_pred CCceEEecCCcEEEEEEecccCCcceeEEEee---CCEEeccccCCccCCCeeEecCCeEEEeecCCCCCEeEEEEEEeC
Q psy12061 88 PPKITIAAHRNLQLRCSAHTEELLDVAYIWTH---NGVRIGNMDLNELETPNINIDGGLLEITNASFADAGEYECVVKST 164 (626)
Q Consensus 88 ~~~~~v~~g~~~~l~C~~~~~p~p~~~i~W~~---~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~a~n~ 164 (626)
|....+..|++.++.|-+.|.+.+.| +|.+ |+..+....-.+. ..-...+...|.|-+....|+|.|+|.+.|.
T Consensus 203 pa~w~vg~wetcS~tCg~~G~q~r~V--~c~qv~anr~~vv~~~nq~~-e~p~vtstcql~ic~ewq~~a~w~tCs~rcg 279 (560)
T KOG4597|consen 203 PAEWFVGDWETCSSTCGVQGRQYRVV--TCEQVFANRENVVMRPNQTV-ENPVVTSTCQLVICNEWQADAGWYTCSARCG 279 (560)
T ss_pred cchhhcccchhhcccccccCCcCcee--eeehhhccccceeecCcccc-CCcceeeeeeEEEcchhhcCCCceeeccccc
Confidence 34557788999999999999998755 8875 4433322111111 1122236678999999999999999999999
Q ss_pred CCceEEEEEEEE
Q psy12061 165 VGKISTKTTVIV 176 (626)
Q Consensus 165 ~g~~~~~~~l~v 176 (626)
.|.....+.+.+
T Consensus 280 ~g~~~rdv~c~s 291 (560)
T KOG4597|consen 280 AGFLRRDVPCSS 291 (560)
T ss_pred cceeeccceeee
Confidence 998877776654
No 438
>PLN02533 probable purple acid phosphatase
Probab=92.54 E-value=0.96 Score=44.86 Aligned_cols=87 Identities=22% Similarity=0.291 Sum_probs=49.9
Q ss_pred CCCCCceEEEeeeCCCEEEEEEeecCCCCCCCceeeEEEEEEEeccCCcc-ccce-e-------eecCccceEEecCCCC
Q psy12061 493 PQKPPSAVHIKGINPTTVHVTWRYVSPSFEEEPIIGYKVRVWEVDQDMSR-ANDT-I-------IPVGNTLDADIVDLSP 563 (626)
Q Consensus 493 p~~~p~~l~~~~~~~~~~~l~W~~~~~~~~~~~i~~Y~i~~~~~~~~~~~-~~~~-~-------~~~~~~~~~~l~~L~p 563 (626)
.+..|+.+++...+.+++.|+|. ...... .. |+|-........ .... . ...+....+.|.+|+|
T Consensus 40 ~~~~P~qvhls~~~~~~m~V~W~--T~~~~~-~~----V~yG~~~~~l~~~a~g~~~~~~~~~~~~~g~iH~v~l~~L~p 112 (427)
T PLN02533 40 DPTHPDQVHISLVGPDKMRISWI--TQDSIP-PS----VVYGTVSGKYEGSANGTSSSYHYLLIYRSGQINDVVIGPLKP 112 (427)
T ss_pred CCCCCceEEEEEcCCCeEEEEEE--CCCCCC-CE----EEEecCCCCCcceEEEEEEEEeccccccCCeEEEEEeCCCCC
Confidence 34468899988778999999999 333222 22 333221111000 0000 0 0112335678999999
Q ss_pred CceEEEEEEEEecCCCCCCCCCcEEEeecc
Q psy12061 564 GKRYHMRVLAFSNGGDGRMSSPAITFQMGE 593 (626)
Q Consensus 564 ~~~Y~~~V~a~~~~G~g~~s~~~~~~~~~~ 593 (626)
++.|.++|- ....| +...|++.+
T Consensus 113 ~T~Y~Yrvg------~~~~s-~~~~F~T~p 135 (427)
T PLN02533 113 NTVYYYKCG------GPSST-QEFSFRTPP 135 (427)
T ss_pred CCEEEEEEC------CCCCc-cceEEECCC
Confidence 999999983 12223 556787764
No 439
>PHA03052 Hypothetical protein; Provisional
Probab=91.98 E-value=0.38 Score=32.02 Aligned_cols=30 Identities=23% Similarity=0.501 Sum_probs=24.8
Q ss_pred CCCCceEEEEeee---CCCCCCeeEEEeCCEEc
Q psy12061 2 AGEGGNVTIFCNP---EAAPKPKFVWKKDGNII 31 (626)
Q Consensus 2 ~~~G~~~~l~C~~---~g~p~p~i~W~~~~~~i 31 (626)
+.-|+.++|.|.| .|...+.|.|.-|+..+
T Consensus 9 ~slGs~ltI~Ckv~lg~g~~~a~V~W~~N~~~~ 41 (69)
T PHA03052 9 TSLGSNLTITCKVSLRPPTTDADVFWISNGMYY 41 (69)
T ss_pred EEccCCceEeEEEEecCCCcceEEEEEeCCcEE
Confidence 4569999999998 34456799999999988
No 440
>TIGR00868 hCaCC calcium-activated chloride channel protein 1. distributions. found a row in 1A13.INFO that was not parsed out
Probab=91.42 E-value=24 Score=38.30 Aligned_cols=88 Identities=13% Similarity=0.184 Sum_probs=50.3
Q ss_pred CCCCCceEEEeeeCCCEEEEEEeecCCCC--CCCceeeEEEEEEEeccCCccccce-e---------eecCcc--ceEEe
Q psy12061 493 PQKPPSAVHIKGINPTTVHVTWRYVSPSF--EEEPIIGYKVRVWEVDQDMSRANDT-I---------IPVGNT--LDADI 558 (626)
Q Consensus 493 p~~~p~~l~~~~~~~~~~~l~W~~~~~~~--~~~~i~~Y~i~~~~~~~~~~~~~~~-~---------~~~~~~--~~~~l 558 (626)
||..-.+|.+. .....|.|+|+ .|.+ ..|....|.|+|...-.+....... . ...++. ..+..
T Consensus 755 PP~rItDL~~~-~~~~~v~LsWT--APG~d~D~G~a~~y~ir~s~~~~~l~~~f~~a~~vn~~~~~P~~ags~e~~~f~~ 831 (863)
T TIGR00868 755 PPSKITDLEAG-FQGDNIILTWT--APGDVLDHGRADRYIIRISTSILDLRDDFNDATQVNTTDLIPKEANSKEVFVFKP 831 (863)
T ss_pred CCccceeeEEe-ecCCEEEEEee--CCCccCCCCccceEEEEecCCHHHHHhhhccccccccCCcCCCCCCceeEEEEeC
Confidence 33334455553 45566999999 5554 7889999999875432221000000 0 011222 23344
Q ss_pred cCC--CCCceEEEEEEEEecCCC-CCCC
Q psy12061 559 VDL--SPGKRYHMRVLAFSNGGD-GRMS 583 (626)
Q Consensus 559 ~~L--~p~~~Y~~~V~a~~~~G~-g~~s 583 (626)
.+. ..++.|.|-|+|++..|. |+.|
T Consensus 832 ~~~~~~~~~~~~~ai~a~d~~~~~s~~s 859 (863)
T TIGR00868 832 EGIPIENGTDLFIAVQAIDKANLTSEVS 859 (863)
T ss_pred CcccccCCeEEEEEEEEEcccccccccc
Confidence 443 367889999999999873 4444
No 441
>PF05790 C2-set: Immunoglobulin C2-set domain; InterPro: IPR008424 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents C2-set domains, which are Ig-like domains resembling the antibody constant domain. C2-set domains are found primarily in the mammalian T-cell surface antigens CD2 (Cluster of Differentiation 2), CD4 and CD80, as well as in vascular (VCAM) and intercellular (ICAM) cell adhesion molecules. CD2 mediates T-cell adhesion via its ectodomain, and signal transduction utilising its 117-amino acid cytoplasmic tail []. CD2 displays structural and functional similarities with African swine fever virus (ASFV) LMW8-DR, a protein that is involved in cell-cell adhesion and immune response modulation, suggesting a possible role in the pathogenesis of ASFV infection []. CD4 is the primary receptor for HIV-1. CD4 has four immunoglobulin-like domains in its extracellular region that share the same structure, but can differ in sequence. Certain extracellular domains may be involved in dimerisation [].; GO: 0007155 cell adhesion, 0016021 integral to membrane; PDB: 1CID_A 1CDU_A 1WIQ_B 2NY4_B 2NY2_B 1WIP_B 1WIO_A 3S4S_G 1CDY_A 3S5L_G ....
Probab=91.28 E-value=0.96 Score=32.25 Aligned_cols=63 Identities=24% Similarity=0.273 Sum_probs=38.5
Q ss_pred EEEEeeeCCCC-------CCeeEEEeCCEEccCCCcEEEccCCcEEEccCCCCCCEEEEEEE-EcCCCCceeeEEEEE
Q psy12061 8 VTIFCNPEAAP-------KPKFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTA-TNVHGMDESKGRLIV 77 (626)
Q Consensus 8 ~~l~C~~~g~p-------~p~i~W~~~~~~i~~~~~~~~~~~g~L~i~~v~~~d~G~Y~C~a-~n~~g~~~~~~~l~v 77 (626)
-.|.|...+-- .+.+.|+-.+..+. .....+........|+|...|.| .+..-.......|.|
T Consensus 8 ~~l~~e~L~~tl~~~~~~~~~~~l~~~~~k~~-------~~~~~~~~~~~~~~d~G~w~C~a~~~~~k~~~s~~~i~v 78 (80)
T PF05790_consen 8 NVLPCEVLELTLEKPPGMKPSLFLENPGKKSL-------ETKKLVSTFTPTTEDSGTWVCTASDNEPKERESKIEILV 78 (80)
T ss_dssp CEEEEEEESECEEETTTECEEEEEECSSCEEE-------EESSEEEEESBTCGGSEEEEEEEEECTTEEEEEEEEEEE
T ss_pred CEeeeeeEEEEEcCCCCCChhheeeccCcccc-------ccceEEEEecCCCCCCEEEEEEEcCCceEEEEEEEEEEc
Confidence 35777774433 45788886654332 12233566777889999999999 444333444455544
No 442
>PHA03283 envelope glycoprotein E; Provisional
Probab=91.05 E-value=9.6 Score=37.61 Aligned_cols=76 Identities=16% Similarity=0.184 Sum_probs=50.3
Q ss_pred cEEEccCCCCCCEEEEEEEEcCCCCceeeEEEEEEeCCceee--------eCC------------CceEEecCCcEEEEE
Q psy12061 44 NLLISPVSRDDSGIYSCTATNVHGMDESKGRLIVLHGPSYYE--------QLP------------PKITIAAHRNLQLRC 103 (626)
Q Consensus 44 ~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~p~~~~--------~~~------------~~~~v~~g~~~~l~C 103 (626)
.|.|.+++.+++|.|.-...+..+.....+.|.|..++.... ..| ....-.+||++.+.-
T Consensus 135 ~l~I~~at~~~aGVYtly~r~d~~~~~~vflvtVk~~~~~~~~~Pp~~~pv~P~~h~a~f~v~nYhS~vf~~GDtf~lsi 214 (542)
T PHA03283 135 VLQIQRATPNIAGVYTLHVSSDGMMKHSVFFVTVKKPPKQPQTPPAPLVPQVPARHHTDFHVRGYHSRVYSPGDSFDLSV 214 (542)
T ss_pred eeEEEecccccCeEEEEEecCCCceEEEEEEEEecCCCcCCCCCCCCccccCCccCCceEEEecceeEEecCCCceeEeE
Confidence 499999999999999999998777555556677755221111 111 233556899988876
Q ss_pred EecccC---CcceeEEEee
Q psy12061 104 SAHTEE---LLDVAYIWTH 119 (626)
Q Consensus 104 ~~~~~p---~p~~~i~W~~ 119 (626)
...... .-.++|.|+.
T Consensus 215 ~l~s~~~d~~fs~~i~Wyy 233 (542)
T PHA03283 215 HLESDIGDPSFSATIDWYY 233 (542)
T ss_pred EEeeccCCCCceEEEEEEE
Confidence 655432 2246788885
No 443
>PHA02865 MHC-like TNF binding protein; Provisional
Probab=90.94 E-value=0.44 Score=44.16 Aligned_cols=21 Identities=29% Similarity=0.705 Sum_probs=18.1
Q ss_pred eEEEEeeeCCC-CCC-eeEEEeC
Q psy12061 7 NVTIFCNPEAA-PKP-KFVWKKD 27 (626)
Q Consensus 7 ~~~l~C~~~g~-p~p-~i~W~~~ 27 (626)
.++|.|.|.|. |.. .++|.||
T Consensus 216 ~~tL~C~A~GFYP~~I~v~W~kd 238 (338)
T PHA02865 216 NTTLFCTFDSHYPSSVAAKWYNS 238 (338)
T ss_pred CceEEEEEEeEeCCccEEEEEec
Confidence 57999999997 554 8999999
No 444
>PF07354 Sp38: Zona-pellucida-binding protein (Sp38); InterPro: IPR010857 This family contains a number of zona-pellucida-binding proteins that seem to be restricted to mammals. These are sperm proteins that bind to the 90 kDa family of zona pellucida glycoproteins in a calcium-dependent manner []. These represent some of the specific molecules that mediate the first steps of gamete interaction, allowing fertilisation to occur [].; GO: 0007339 binding of sperm to zona pellucida, 0005576 extracellular region
Probab=90.91 E-value=0.39 Score=42.27 Aligned_cols=44 Identities=27% Similarity=0.541 Sum_probs=33.2
Q ss_pred eeEEEeeC-CEEeccccCCccCCCeeEe-cCCeEEEeecCCCCCEeEEEEEEe
Q psy12061 113 VAYIWTHN-GVRIGNMDLNELETPNINI-DGGLLEITNASFADAGEYECVVKS 163 (626)
Q Consensus 113 ~~i~W~~~-~~~~~~~~~~~~~~~~~~~-~~~~l~i~~~~~~d~g~Y~C~a~n 163 (626)
..+.|... |..+... .++.+ .+|.|.+.+.+..++|.|+|..+-
T Consensus 13 P~y~W~GP~g~~l~gn-------~~~nIT~TG~L~~~~F~esmSG~YTCtLsY 58 (271)
T PF07354_consen 13 PTYLWTGPNGKPLSGN-------SYVNITETGKLMFKNFQESMSGSYTCTLSY 58 (271)
T ss_pred CceEEECCCCcccCCC-------CeEEEccCceEEeeccccccCCceEEEEEE
Confidence 36789974 5555543 44443 778999999999999999998753
No 445
>PHA03052 Hypothetical protein; Provisional
Probab=90.85 E-value=2.2 Score=28.56 Aligned_cols=40 Identities=23% Similarity=0.410 Sum_probs=31.1
Q ss_pred CCceEEecCCcEEEEEEecc-cCCcceeEEEeeCCEEeccc
Q psy12061 88 PPKITIAAHRNLQLRCSAHT-EELLDVAYIWTHNGVRIGNM 127 (626)
Q Consensus 88 ~~~~~v~~g~~~~l~C~~~~-~p~p~~~i~W~~~~~~~~~~ 127 (626)
|..+.+..|..++|.|.+.- .+.....+.|.-|+..+...
T Consensus 4 P~~i~~slGs~ltI~Ckv~lg~g~~~a~V~W~~N~~~~e~~ 44 (69)
T PHA03052 4 PEGIVTSLGSNLTITCKVSLRPPTTDADVFWISNGMYYEED 44 (69)
T ss_pred CccEEEEccCCceEeEEEEecCCCcceEEEEEeCCcEEecc
Confidence 46778899999999999874 44445567899999998443
No 446
>PLN02533 probable purple acid phosphatase
Probab=90.07 E-value=6.8 Score=38.99 Aligned_cols=88 Identities=14% Similarity=0.034 Sum_probs=51.5
Q ss_pred CCCCCceeEeecCCcCeEEEEEeeCCCCCcccCcceEEEEEEecCCCcceeeeee--e------ecceeeEEEEeCCCcc
Q psy12061 287 PYQAPSRIGGGGGKIGDLSISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETLK--E------YGNVGIAVVRIPSEFY 358 (626)
Q Consensus 287 p~~~p~~~~~~~~~~~~v~l~W~~~~~~~~~~~~~~y~i~~~~~~~~~~~~~~~~--~------~~~~~~~~~~~~~L~p 358 (626)
.+..|..+.+.-.+.+++.|+|.... .. . -.|+|....+.-.....-. . ........+.|++|+|
T Consensus 40 ~~~~P~qvhls~~~~~~m~V~W~T~~--~~-~----~~V~yG~~~~~l~~~a~g~~~~~~~~~~~~~g~iH~v~l~~L~p 112 (427)
T PLN02533 40 DPTHPDQVHISLVGPDKMRISWITQD--SI-P----PSVVYGTVSGKYEGSANGTSSSYHYLLIYRSGQINDVVIGPLKP 112 (427)
T ss_pred CCCCCceEEEEEcCCCeEEEEEECCC--CC-C----CEEEEecCCCCCcceEEEEEEEEeccccccCCeEEEEEeCCCCC
Confidence 34567788877767889999999732 11 1 1466655432211111100 0 0111234567999999
Q ss_pred eeEEEEEEEEecCCCCCCCCccEEEEccC
Q psy12061 359 YTEYEVKVQAINDVGPGPESEVVTIFSAE 387 (626)
Q Consensus 359 ~~~Y~~~v~a~n~~g~~~~s~~~~~~t~~ 387 (626)
++.|.|+|-. ...+....++|.+
T Consensus 113 ~T~Y~Yrvg~------~~~s~~~~F~T~p 135 (427)
T PLN02533 113 NTVYYYKCGG------PSSTQEFSFRTPP 135 (427)
T ss_pred CCEEEEEECC------CCCccceEEECCC
Confidence 9999999931 1235667777754
No 447
>PF09240 IL6Ra-bind: Interleukin-6 receptor alpha chain, binding; InterPro: IPR015321 Members of this entry adopt a structure consisting of an immunoglobulin-like beta-sandwich, with seven strands in two beta-sheets, in a Greek-key topology. They are required for binding to the cytokine Interleukin-6 []. ; PDB: 1N26_A 1P9M_C 3LB6_C 1PVH_A 3L5H_A 1BQU_A 1I1R_A 3QT2_B 3BPN_C 3BPO_C ....
Probab=89.44 E-value=6.1 Score=29.74 Aligned_cols=80 Identities=24% Similarity=0.230 Sum_probs=51.5
Q ss_pred CCCceEEEeeecceEEEEeeeccccccccceeeEEEEEEEEecCCCccce-EEEE-ecCccceEEEeCCcc----CceEE
Q psy12061 393 APQGVFSRGFNSTAINVTWNPIELIRENIRGRLIGHRIKYWKEDNPEETA-VYYL-SRTTRNWALIVGLQP----DTKYY 466 (626)
Q Consensus 393 ~p~~~~~~~~~~~si~l~W~~~~~~~~~~~~~i~~Y~v~~~~~~~~~~~~-~~~~-~~~~~~~~~i~~L~p----~t~Y~ 466 (626)
+|+++.....+...+..+|++...... -..|.++||......... .... ..+......+..... ...|.
T Consensus 1 ~~~nlsC~~~~~~~m~CtW~~g~~~~~-----~t~y~L~~~~~~~~~~~eC~~y~~~~~~~~gC~~~~~~~~~~~~~~~~ 75 (99)
T PF09240_consen 1 KPQNLSCFIYNLEYMNCTWEPGKEAPP-----DTQYTLYYWYSPLEEEKECPHYSKDSGTRIGCQFPVSEIDSSEFSQYN 75 (99)
T ss_dssp S-EEEEEEEETTTEEEEEEECCTTCST-----TEEEEEEEEETTSSSEEEESEEEESTSSEEEEEEESCTT-TTTTSEEE
T ss_pred CCeeCEEEEECCEEEEEEECCCCCCCC-----cccEEEEEEcCCCCccccCCCccccCCceeEEEecCCCccccccceEE
Confidence 367899988899999999987543322 247999998876443222 1222 222344455655555 34799
Q ss_pred EEEEEeeCCCC
Q psy12061 467 VKVMAYNNAGE 477 (626)
Q Consensus 467 v~V~a~~~~g~ 477 (626)
|.|.+.+..|.
T Consensus 76 v~V~~ss~~~~ 86 (99)
T PF09240_consen 76 VCVNGSSSAGS 86 (99)
T ss_dssp EEEEEEETTEE
T ss_pred EEEEeccCCCc
Confidence 99999888765
No 448
>PF02010 REJ: REJ domain; InterPro: IPR002859 The REJ (Receptor for Egg Jelly) domain is found in PKD1 P98161 from SWISSPROT and the sperm receptor for egg jelly Q26627 from SWISSPROT. The exact function of this domain is unknown. The domain is 600 amino acids long so is probably composed of multiple structural domains. There are six completely conserved cysteine residues that may form disulphide bridges. This region contains tandem PKD-like domains. Sequence similarity between a region of the autosomal dominant polycystic kidney disease (ADPKD) protein, polycystin-1 and a sea urchin sperm glycoprotein involved in fertilization, the receptor for egg jelly (suREJ) has been known for some time. The suREJ protein binds the glycoprotein coat of the egg (egg jelly), triggering the acrosome reaction, which transforms the sperm into a fusogenic cell. The sequence similarity and expression pattern suggests that the predicted human PKDREJ protein is a mammalian equivalent of the suREJ protein and therefore may have a central role in human fertilization [].; PDB: 2E7M_A 2YRL_A.
Probab=88.21 E-value=0.73 Score=46.48 Aligned_cols=167 Identities=15% Similarity=0.131 Sum_probs=25.2
Q ss_pred eEEEEeeeCCCCCCeeEEEeCCEEccCCCcEE----EccCCcEEEccCCC-CCCEEEEEEEE-cCCCC--ceeeEEEEEE
Q psy12061 7 NVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRK----IFENGNLLISPVSR-DDSGIYSCTAT-NVHGM--DESKGRLIVL 78 (626)
Q Consensus 7 ~~~l~C~~~g~p~p~i~W~~~~~~i~~~~~~~----~~~~g~L~i~~v~~-~d~G~Y~C~a~-n~~g~--~~~~~~l~v~ 78 (626)
.+.|.|... -...+.|.....+.. .... ......|.|+.-.+ .-...|...+. ..... ......+.|.
T Consensus 2 ~~~~~C~~~--~~~~y~W~~~~~~~~--~~~~~~~~~~~~~~l~ip~~~L~~G~y~~~~~Vt~~~~~~~~~~~~~~v~V~ 77 (440)
T PF02010_consen 2 HVSLNCNDA--STVTYNWTVFSGPSN--SIVQDMDNSSNTPQLTIPPYTLPPGDYTFTLTVTASSNPGLSSTDSVTVTVE 77 (440)
T ss_dssp ----------------BEEEEES-TT---EEESTTT--SSSECEEECES--SCEEEEEEEEE--BCTTEEEEEEEEEEEE
T ss_pred Ccccccccc--cceEEEEEEEecCCc--CccccccccCCceEEEeCcccCCCCCEEEEEEEEEECCCCceEEEEEEEEEe
Confidence 467899332 245889996322210 1111 11224588888766 33456777777 22222 3334566665
Q ss_pred eCCceeeeC-CCceEEecCCcEEEEEEecccCCc-----ceeEEEeeCCEEecccc-CCccCCCeeEecCCeEEEee--c
Q psy12061 79 HGPSYYEQL-PPKITIAAHRNLQLRCSAHTEELL-----DVAYIWTHNGVRIGNMD-LNELETPNINIDGGLLEITN--A 149 (626)
Q Consensus 79 ~~p~~~~~~-~~~~~v~~g~~~~l~C~~~~~p~p-----~~~i~W~~~~~~~~~~~-~~~~~~~~~~~~~~~l~i~~--~ 149 (626)
..|...... .....+..++++.|.....-+|.- .+++.|......-.... ...............|.|.. +
T Consensus 78 ~s~l~~~I~gG~~~~~~~~~~i~ldgs~S~Dpd~~~~~~~l~y~W~C~~~~~~~~C~~~~~~~~~~~~~~~~l~i~~~~l 157 (440)
T PF02010_consen 78 PSPLVAVIKGGSSRTVGYNSDITLDGSQSYDPDGPPGDSGLTYSWSCTDLSSNSACSTPSTNITLLNSSSSSLTIPASTL 157 (440)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred eccceeEEcCCccceeecCceEEEeeEEEecccccccCCceEEEEEEeCCceeccccccccccccCCCCCEEEEEEhHHc
Confidence 544332221 122334445678888766555532 36788986543332000 00000011223455677743 3
Q ss_pred CCCCCEeEEEEEEeCCC-ceEEEEEEEEe
Q psy12061 150 SFADAGEYECVVKSTVG-KISTKTTVIVE 177 (626)
Q Consensus 150 ~~~d~g~Y~C~a~n~~g-~~~~~~~l~v~ 177 (626)
.....+.++..+....+ ..+....+.+.
T Consensus 158 ~~~~~y~f~ltv~k~~r~s~s~~~~v~v~ 186 (440)
T PF02010_consen 158 SPGSTYTFTLTVSKGSRSSSSASQTVTVV 186 (440)
T ss_dssp -----------------------------
T ss_pred CCCceEEEEEEEEeCCCCceeeEEEEEec
Confidence 33444445555554444 33444444443
No 449
>PF06832 BiPBP_C: Penicillin-Binding Protein C-terminus Family; InterPro: IPR009647 This conserved region of approximately 90 residues is found in a sub-group of bacterial Penicillin-Binding Proteins (PBPs). A variable length loop region separates this region from the transpeptidase unit (IPR001460 from INTERPRO). It is predicted to be a beta fold.
Probab=87.85 E-value=3.6 Score=30.22 Aligned_cols=56 Identities=18% Similarity=0.306 Sum_probs=37.3
Q ss_pred eEEEEeeeCCCCCCeeEEEeCCEEccCCCcEEEccCCcEEEccCCCCCCEEEEEEEEcCCCCcee
Q psy12061 7 NVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTATNVHGMDES 71 (626)
Q Consensus 7 ~~~l~C~~~g~p~p~i~W~~~~~~i~~~~~~~~~~~g~L~i~~v~~~d~G~Y~C~a~n~~g~~~~ 71 (626)
...|.+.+.+. .+.+.|+.||..+..... ...+. ......|.|+..+.+..|...+
T Consensus 31 ~~~l~l~a~~~-~~~~~W~vdg~~~g~~~~-----~~~~~---~~~~~~G~h~l~vvD~~G~~~~ 86 (89)
T PF06832_consen 31 RQPLVLKAAGG-RGPVYWFVDGEPLGTTQP-----GHQLF---WQPDRPGEHTLTVVDAQGRSAS 86 (89)
T ss_pred cceEEEEEeCC-CCcEEEEECCEEcccCCC-----CCeEE---eCCCCCeeEEEEEEcCCCCEEE
Confidence 45555666555 459999999999942211 11122 3457889999999988887544
No 450
>PF03921 ICAM_N: Intercellular adhesion molecule (ICAM), N-terminal domain; InterPro: IPR013768 Intercellular adhesion molecules (ICAMs) and vascular cell adhesion molecule-1 (VCAM-1) are part of the immunoglobulin superfamily. They are important in inflammation, immune responses and in intracellular signalling events []. The ICAM family consists of five members, designated ICAM-1 to ICAM-5. They are known to bind to leucocyte integrins CD11/CD18 during inflammation and in immune responses. In addition, ICAMs may exist in soluble forms in human plasma, due to activation and proteolysis mechanisms at cell surfaces. ICAM-1 (CD54) contains five Ig-like domains. It is expressed on leucocytes, endothelial and epithelial cells, and is upregulated in response to bacterial invasion. The protein is a ligand for lymphocyte-function associated (LFA) antigens and also a receptor for CD11a,b/CD18, fibrinogen, human rhinovirus and Plasmodium falciparum-infected erythrocytes. ICAM-1 binding sites for CD11a/CD18 and its other binding partners are located in the first domain and are overlapping. ICAM-1 domain 2 seems to play an important role in maintaining the conformation of domain 1 and particularly the structural integrity of the LFA-1 ligand-binding site []. The 3-dimensional atomic structure of the tandem N-terminal Ig-like domains (D1 and D2) of ICAM-1 has been determined to 2.2A resolution and fitted into a cryoelectron microscopy reconstruction of a rhinovirus-ICAM-1 complex []. Extensive charge interactions between ICAM-1 and human rhinovirusesare largely conserved in major and minor receptor groups of rhinoviruses. The interaction of ICAMs with LFA-1 is mediated by a divalent cation bound to the insertion (I)-domain on the alpha chain of LFA-1 and the carboxyl group of a conserved glutamic acid residue on ICAMs. ICAM-2 (CD102) has two Ig-like domains. It is expressed on endothelial cells, leucocytes and platelets, and binds to CD11a'b/CD18. The protein is refractory to proinflammatory cytokines, and plays an important role in the adhesion of leucocytes to the uninduced endothelium []. ICAM-3 (CD50) contains five Ig-like domains and binds to leucocyte integrins CD11a'd/CD18. The protein plays an important role in the immune response and perhaps in signal transduction []. ICAM-4 (LW blood group Ag) is red blood cell (RBC) specific and binds to CD11a'b/CD18. It is associated with the RBC Rh antigens and could be important in retaining immature red cells in the bone marrow, or in the uptake of senescent cells into the spleen []. ICAM-5 (telencephalin) has nine Ig-like domains and is confined to the telencephalon of the brain. The role of this CD11a/CD18 binding molecule is not yet known []. VCAM-1 was first described as a cytokine-inducible endothelial adhesion molecule. It can bind to leucocyte integrin VL-4 (very late antigen-4) to recruit leucocytes to sites of inflammation []. The predominant form of VCAM-1 in vivo has an N-terminal extracellular region comprising seven Ig-like domains []. A conserved integrin-binding motif has been identified in domains 1 and 4, variants of which are present in the N-terminal domain of all members of the integrin-binding subgroup of the immunoglobulin superfamily. The structure of a VLA-4-binding fragment comprising the first two domains of VCAM-1 has been determined to 1.8A resolution. The integrin-binding motif is exposed and forms the N-terminal region of the loop between beta-strands C and D of domain 1 []. VCAM-1 domains 1 and 2 are structurally similar to ICAM-1 and ICAM-2 []. This entry represents the N-terminal domain of ICAM proteins such as ICAM-2, ICAM-3 and ICAM-4.; PDB: 3BN3_B 1T0P_B 1ZXQ_A 3TCX_A 1MQ8_A 1Z7Z_I 1IC1_A 1IAM_A.
Probab=86.86 E-value=4.7 Score=29.51 Aligned_cols=73 Identities=22% Similarity=0.358 Sum_probs=43.5
Q ss_pred CCCCceEEEEeeeCCCCCC-eeEEEeC--CEEccCCCcEEEccCCcEEEccCCCCCCEEEEEEEEcCCCCceeeEEEEEE
Q psy12061 2 AGEGGNVTIFCNPEAAPKP-KFVWKKD--GNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTATNVHGMDESKGRLIVL 78 (626)
Q Consensus 2 ~~~G~~~~l~C~~~g~p~p-~i~W~~~--~~~i~~~~~~~~~~~g~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~v~ 78 (626)
|..|+.+.++|..+= |.| .+-|.-. ...+..+.... ...+.+|+. | ..-.|.+.-......+++.|.|+
T Consensus 15 V~~G~Sv~VNCStsC-~~p~~~GLET~L~k~~~~~g~~W~-----~f~LsnV~~-d-s~~~C~~~C~g~Q~~~~~~ItVY 86 (91)
T PF03921_consen 15 VPPGGSVWVNCSTSC-PQPEKIGLETSLSKTELDSGPQWK-----AFQLSNVTE-D-SSPLCFFNCSGEQSSASANITVY 86 (91)
T ss_dssp EETTEEEEEEEEESS-SS-SEEEEESSSEEEEEEEETTEE-----EEEEEEE-S-C-EEEEEEEEETTEEEEEEEEEEEE
T ss_pred ECCCCCEEEEEcCCC-CCCCcceEEEecCCcccCCCCcEE-----EEEEEcccc-C-CeEEEEEEcCCeEEEeEEeeEEe
Confidence 568999999999853 334 4455431 11221111111 366788886 4 56789998764456778899998
Q ss_pred eCCc
Q psy12061 79 HGPS 82 (626)
Q Consensus 79 ~~p~ 82 (626)
.+|.
T Consensus 87 ~~Pe 90 (91)
T PF03921_consen 87 KPPE 90 (91)
T ss_dssp B--S
T ss_pred CCCC
Confidence 8774
No 451
>PF02480 Herpes_gE: Alphaherpesvirus glycoprotein E; InterPro: IPR003404 Glycoprotein E (gE) of Alphaherpesvirus forms a complex with glycoprotein I (gI), functioning as an immunoglobulin G (IgG) Fc binding protein. gE is involved in virus spread but is not essential for propagation [].; GO: 0016020 membrane; PDB: 2GJ7_F 2GIY_B.
Probab=85.56 E-value=2 Score=42.43 Aligned_cols=79 Identities=16% Similarity=0.166 Sum_probs=14.7
Q ss_pred CCcEEEccCCCCCCEEEEEEEEcCCCCceee-EEEEEEeCCce-------------------eeeCCCceEEecCCcEEE
Q psy12061 42 NGNLLISPVSRDDSGIYSCTATNVHGMDESK-GRLIVLHGPSY-------------------YEQLPPKITIAAHRNLQL 101 (626)
Q Consensus 42 ~g~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~-~~l~v~~~p~~-------------------~~~~~~~~~v~~g~~~~l 101 (626)
.|.|.|.+++.+|+|.|.-...+..+..... ..|.|..+... ....+....-..|+++.+
T Consensus 88 ~~~l~i~~a~~~~~GvY~l~~~~~~~~~~~~~~~v~v~~~~~~~~~p~p~~p~~p~~~~~~~~~~~~~s~vf~~Gdtf~~ 167 (439)
T PF02480_consen 88 KGGLSILNATEQDSGVYTLYVRNDSGWAHQSVVFVTVKGPAPDPRTPPPHHPIVPHRHGATFHLKNYHSHVFSPGDTFHL 167 (439)
T ss_dssp ----------------------------------------------------------SEEEEEE--SEEE--TT--EE-
T ss_pred CCceEEeccccccCeeEEEEecCCCCceEEEEEEEEEcCCCcCCCCCCCCCCCCCcccccEEEEeccceEEecCCCcEEE
Confidence 4569999999999999999999877765443 45555441111 111124456678998877
Q ss_pred EEEeccc----CCcceeEEEeeC
Q psy12061 102 RCSAHTE----ELLDVAYIWTHN 120 (626)
Q Consensus 102 ~C~~~~~----p~p~~~i~W~~~ 120 (626)
.-..... ++=.++|.|+.-
T Consensus 168 ~v~l~~~~~d~~~f~~~i~W~~~ 190 (439)
T PF02480_consen 168 SVHLQSEAHDDPPFSLEIDWYYM 190 (439)
T ss_dssp --EEEEEESSS--EEEEEEEEEE
T ss_pred eEEEEeccCCCCCeeEEEEEEEe
Confidence 7665432 222567889863
No 452
>PF14292 SusE: SusE outer membrane protein
Probab=84.71 E-value=14 Score=29.12 Aligned_cols=74 Identities=14% Similarity=0.263 Sum_probs=41.8
Q ss_pred eEEEeeeCCCEEEEEEeecCCCCCCC-ceeeEEEEEEEeccCCccccceeeecCccceEEec-----------CCCCCce
Q psy12061 499 AVHIKGINPTTVHVTWRYVSPSFEEE-PIIGYKVRVWEVDQDMSRANDTIIPVGNTLDADIV-----------DLSPGKR 566 (626)
Q Consensus 499 ~l~~~~~~~~~~~l~W~~~~~~~~~~-~i~~Y~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~-----------~L~p~~~ 566 (626)
.+.........++++|+ ++..+.. -...|.|++...+.++.............++..+. |+.||..
T Consensus 36 ~i~L~~~~~~a~tftW~--~~~~~~~~a~v~Y~lq~~~~~~~F~~~~~~~~~~~~~~s~~~t~~eLN~~l~~~g~~~~~~ 113 (122)
T PF14292_consen 36 SIVLDEASDNAVTFTWT--AADYGGPDAPVTYTLQFDKKGNDFSSPVEIVTTDNGSTSVSITVKELNSILLKLGLEPGEA 113 (122)
T ss_pred eEEecccCCceEEEEEE--CCccCCCCCceEEEEEEeccCCCccCcEEEEeecCcceeEEecHHHHHHHHHHcCCCCCce
Confidence 34344345678999999 5554443 45579998766554433222211111113334433 6788888
Q ss_pred EEEEEEEE
Q psy12061 567 YHMRVLAF 574 (626)
Q Consensus 567 Y~~~V~a~ 574 (626)
..+.+|..
T Consensus 114 ~~l~~rV~ 121 (122)
T PF14292_consen 114 GTLYWRVK 121 (122)
T ss_pred EEEEEEEE
Confidence 88777753
No 453
>PHA02865 MHC-like TNF binding protein; Provisional
Probab=83.56 E-value=5.2 Score=37.40 Aligned_cols=23 Identities=26% Similarity=0.372 Sum_probs=20.5
Q ss_pred cEEEEEEecccCCcceeEEEeeC
Q psy12061 98 NLQLRCSAHTEELLDVAYIWTHN 120 (626)
Q Consensus 98 ~~~l~C~~~~~p~p~~~i~W~~~ 120 (626)
.++|.|.|.|-=+..|.+.|.||
T Consensus 216 ~~tL~C~A~GFYP~~I~v~W~kd 238 (338)
T PHA02865 216 NTTLFCTFDSHYPSSVAAKWYNS 238 (338)
T ss_pred CceEEEEEEeEeCCccEEEEEec
Confidence 57999999996667899999999
No 454
>PF05790 C2-set: Immunoglobulin C2-set domain; InterPro: IPR008424 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents C2-set domains, which are Ig-like domains resembling the antibody constant domain. C2-set domains are found primarily in the mammalian T-cell surface antigens CD2 (Cluster of Differentiation 2), CD4 and CD80, as well as in vascular (VCAM) and intercellular (ICAM) cell adhesion molecules. CD2 mediates T-cell adhesion via its ectodomain, and signal transduction utilising its 117-amino acid cytoplasmic tail []. CD2 displays structural and functional similarities with African swine fever virus (ASFV) LMW8-DR, a protein that is involved in cell-cell adhesion and immune response modulation, suggesting a possible role in the pathogenesis of ASFV infection []. CD4 is the primary receptor for HIV-1. CD4 has four immunoglobulin-like domains in its extracellular region that share the same structure, but can differ in sequence. Certain extracellular domains may be involved in dimerisation [].; GO: 0007155 cell adhesion, 0016021 integral to membrane; PDB: 1CID_A 1CDU_A 1WIQ_B 2NY4_B 2NY2_B 1WIP_B 1WIO_A 3S4S_G 1CDY_A 3S5L_G ....
Probab=83.24 E-value=11 Score=27.02 Aligned_cols=37 Identities=16% Similarity=0.343 Sum_probs=26.4
Q ss_pred cCCeEEEeecCCCCCEeEEEEE-EeCCCceEEEEEEEE
Q psy12061 140 DGGLLEITNASFADAGEYECVV-KSTVGKISTKTTVIV 176 (626)
Q Consensus 140 ~~~~l~i~~~~~~d~g~Y~C~a-~n~~g~~~~~~~l~v 176 (626)
....+.......+|+|...|.| .+..-..+....|.+
T Consensus 41 ~~~~~~~~~~~~~d~G~w~C~a~~~~~k~~~s~~~i~v 78 (80)
T PF05790_consen 41 TKKLVSTFTPTTEDSGTWVCTASDNEPKERESKIEILV 78 (80)
T ss_dssp ESSEEEEESBTCGGSEEEEEEEEECTTEEEEEEEEEEE
T ss_pred cceEEEEecCCCCCCEEEEEEEcCCceEEEEEEEEEEc
Confidence 4456777888899999999999 555445555555554
No 455
>PHA03189 UL14 tegument protein; Provisional
Probab=81.94 E-value=15 Score=33.39 Aligned_cols=82 Identities=20% Similarity=0.314 Sum_probs=46.9
Q ss_pred CCCceEEecCCcEEEEEEecccCCcceeEE-----Ee----------eCCEEeccccCCccCCCeeEecC----CeEEEe
Q psy12061 87 LPPKITIAAHRNLQLRCSAHTEELLDVAYI-----WT----------HNGVRIGNMDLNELETPNINIDG----GLLEIT 147 (626)
Q Consensus 87 ~~~~~~v~~g~~~~l~C~~~~~p~p~~~i~-----W~----------~~~~~~~~~~~~~~~~~~~~~~~----~~l~i~ 147 (626)
+|..+.+..|+.+++.|.+....=|.+.|. |. ..|..+.+.-.+++...+.+..+ ..|+++
T Consensus 58 spAP~l~pyGdrvtVpC~fp~H~WPevsIrarfCys~e~s~eLv~da~~G~~l~ndl~~~L~~~~W~Fedlg~aq~ltLt 137 (348)
T PHA03189 58 SPAPLLVPYGDRVTVPCTFPTHDWPEVSIRARFCYSPERSRELVVDADSGGELHNDLTYRLPEASWKFEDLGAAQRLTLT 137 (348)
T ss_pred CCCccccCCCceeeeeeeecCCCCceeeEEEEEeeccccceEEEEEcccCCEeccccceecccceeeeecccceeEEEEE
Confidence 356677889999999999877655544432 21 12333333222233333333322 123332
Q ss_pred -ecCCCCCEeEEEEEEeCCCce
Q psy12061 148 -NASFADAGEYECVVKSTVGKI 168 (626)
Q Consensus 148 -~~~~~d~g~Y~C~a~n~~g~~ 168 (626)
++..+.+|.|.|...|.....
T Consensus 138 F~v~t~taG~Y~CvLrN~tHgl 159 (348)
T PHA03189 138 FRVSTSTAGMYECVLRNETHGL 159 (348)
T ss_pred EEEEecccceEEEEecccccee
Confidence 445678999999999865443
No 456
>KOG1225|consensus
Probab=81.08 E-value=5.9 Score=39.82 Aligned_cols=155 Identities=17% Similarity=0.156 Sum_probs=90.1
Q ss_pred CCceEEEeeecceEEEEeeeccccccccceeeEEEEEEEEecCCCccceEEEEecCccceEEEeCCccCceEEEEEEEee
Q psy12061 394 PQGVFSRGFNSTAINVTWNPIELIRENIRGRLIGHRIKYWKEDNPEETAVYYLSRTTRNWALIVGLQPDTKYYVKVMAYN 473 (626)
Q Consensus 394 p~~~~~~~~~~~si~l~W~~~~~~~~~~~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~v~V~a~~ 473 (626)
|..+....-+..++-+.|... .....|...|.......... ..........+.+..|+|++.|.++++++-
T Consensus 369 ~~~~~~~~cs~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~-~~r~~~~~~~~~~~~~~~g~~~~~~~~~v~ 439 (525)
T KOG1225|consen 369 PSLLLITECSPPSLCIAGVGR--------RRVTHCAGTYCPLGESGGDL-QGRVPGDANSVDIQGLEPGDEYNCSVNTVA 439 (525)
T ss_pred chhhcccccCCCceeeccccc--------cccccccccccccccCCCcc-ceeeccceeeeeeeeecCCcceeeehhhhh
Confidence 334444445566777777721 11334444443333222222 233345556688999999999999999875
Q ss_pred CC-CCCCCCccEEEeecCCCCCCCCceEEEeeeCCCEEEEEEeecCCCCCCCceeeEEEEEEEeccCCccccceeeecCc
Q psy12061 474 NA-GEGPESERYLERTYRKAPQKPPSAVHIKGINPTTVHVTWRYVSPSFEEEPIIGYKVRVWEVDQDMSRANDTIIPVGN 552 (626)
Q Consensus 474 ~~-g~s~~s~~~~~~t~~~~p~~~p~~l~~~~~~~~~~~l~W~~~~~~~~~~~i~~Y~i~~~~~~~~~~~~~~~~~~~~~ 552 (626)
.. |..+.... ..+... .+..+.+.....+++.+.|. .|.. ...++.+.+ ......- .........
T Consensus 440 ~~~~~~~~~~~--~~~~~~----~~g~~~v~~~~~~s~e~~g~--~~s~---~~~~~~~~~-~~~~~~~--~~~~~~~~~ 505 (525)
T KOG1225|consen 440 ANIGSLPKDKS--ETTVLC----WNGGLCVDGETESSLEVGGP--CPSS---GTCGWEVRC-GPCGNDG--GVNAEPPPE 505 (525)
T ss_pred hhhccCCcccc--cceEee----cCCceeeeeeeeccccccCC--CCCc---cccceEEEe-eecCccc--ccccCCCCC
Confidence 43 33333322 222222 35577788888899999998 3432 234577766 2222211 111222336
Q ss_pred cceEEecCCCCCceEEEEE
Q psy12061 553 TLDADIVDLSPGKRYHMRV 571 (626)
Q Consensus 553 ~~~~~l~~L~p~~~Y~~~V 571 (626)
.+.+...+|.|++.|.+.+
T Consensus 506 ~~~~~~~~l~~c~~~~~~~ 524 (525)
T KOG1225|consen 506 CTSYDRTGLGPCTEYEVSV 524 (525)
T ss_pred CCCCCccCcccccceeccc
Confidence 6788899999999998765
No 457
>KOG1948|consensus
Probab=79.24 E-value=96 Score=33.30 Aligned_cols=21 Identities=43% Similarity=0.596 Sum_probs=19.3
Q ss_pred ceEEEeCCccCceEEEEEEEe
Q psy12061 452 NWALIVGLQPDTKYYVKVMAY 472 (626)
Q Consensus 452 ~~~~i~~L~p~t~Y~v~V~a~ 472 (626)
-.|.|.+|.|++.|.++|.+.
T Consensus 946 G~yRiRGL~Pdc~Y~V~vk~~ 966 (1165)
T KOG1948|consen 946 GTYRIRGLLPDCEYQVHVKSY 966 (1165)
T ss_pred CcEEEeccCCCceEEEEEeec
Confidence 459999999999999999987
No 458
>PF07495 Y_Y_Y: Y_Y_Y domain; InterPro: IPR011123 This region is mostly found at the end of the beta propellers (IPR011110 from INTERPRO) in a family of two component regulators. However they are also found tandemly repeated in Q891H4 from SWISSPROT without other signal conduction domains being present. It is named after the conserved tyrosines found in the alignment. The exact function is not known.; PDB: 3V9F_D 3VA6_B 3OTT_B 4A2M_D 4A2L_B.
Probab=78.36 E-value=7.8 Score=26.29 Aligned_cols=26 Identities=31% Similarity=0.373 Sum_probs=19.6
Q ss_pred eEEEeCCccCceEEEEEEEeeCCCCCC
Q psy12061 453 WALIVGLQPDTKYYVKVMAYNNAGEGP 479 (626)
Q Consensus 453 ~~~i~~L~p~t~Y~v~V~a~~~~g~s~ 479 (626)
.+.+.+|.|| .|.|.|+|.+..|...
T Consensus 30 ~~~~~~L~~G-~Y~l~V~a~~~~~~~~ 55 (66)
T PF07495_consen 30 SISYTNLPPG-KYTLEVRAKDNNGKWS 55 (66)
T ss_dssp EEEEES--SE-EEEEEEEEEETTS-B-
T ss_pred EEEEEeCCCE-EEEEEEEEECCCCCcC
Confidence 6889999987 8999999999887643
No 459
>PHA03189 UL14 tegument protein; Provisional
Probab=77.30 E-value=14 Score=33.60 Aligned_cols=65 Identities=22% Similarity=0.318 Sum_probs=37.7
Q ss_pred CCCCceEEEEeeeCC--CCCCeeEEEe---------------CCEEccCCCcEEE-------ccCC-----cEEEccCCC
Q psy12061 2 AGEGGNVTIFCNPEA--APKPKFVWKK---------------DGNIIGSGGRRKI-------FENG-----NLLISPVSR 52 (626)
Q Consensus 2 ~~~G~~~~l~C~~~g--~p~p~i~W~~---------------~~~~i~~~~~~~~-------~~~g-----~L~i~~v~~ 52 (626)
+-+|+.+++.|.+.. .|...|.=.. .|..+.++-.+++ .+.| +|.|. +..
T Consensus 64 ~pyGdrvtVpC~fp~H~WPevsIrarfCys~e~s~eLv~da~~G~~l~ndl~~~L~~~~W~Fedlg~aq~ltLtF~-v~t 142 (348)
T PHA03189 64 VPYGDRVTVPCTFPTHDWPEVSIRARFCYSPERSRELVVDADSGGELHNDLTYRLPEASWKFEDLGAAQRLTLTFR-VST 142 (348)
T ss_pred cCCCceeeeeeeecCCCCceeeEEEEEeeccccceEEEEEcccCCEeccccceecccceeeeecccceeEEEEEEE-EEe
Confidence 457999999999844 3665443221 2223322222222 1112 46555 556
Q ss_pred CCCEEEEEEEEcCCC
Q psy12061 53 DDSGIYSCTATNVHG 67 (626)
Q Consensus 53 ~d~G~Y~C~a~n~~g 67 (626)
+-+|.|.|+..|...
T Consensus 143 ~taG~Y~CvLrN~tH 157 (348)
T PHA03189 143 STAGMYECVLRNETH 157 (348)
T ss_pred cccceEEEEeccccc
Confidence 789999999988643
No 460
>PHA03112 IL-18 binding protein; Provisional
Probab=76.13 E-value=5.8 Score=31.53 Aligned_cols=69 Identities=16% Similarity=0.278 Sum_probs=42.6
Q ss_pred CCCceEEEEeeeCCC-CC-CeeEEEeCC-EEcc-------------CCCcEEEccCC---cEEEccCCCC-CCEEEEEEE
Q psy12061 3 GEGGNVTIFCNPEAA-PK-PKFVWKKDG-NIIG-------------SGGRRKIFENG---NLLISPVSRD-DSGIYSCTA 62 (626)
Q Consensus 3 ~~G~~~~l~C~~~g~-p~-p~i~W~~~~-~~i~-------------~~~~~~~~~~g---~L~i~~v~~~-d~G~Y~C~a 62 (626)
++|+++.|+|.+-+. |. .-+.|.+++ .... .+.+..-..++ .|.+.+++.+ +.-..+|+.
T Consensus 36 k~~~~vvL~C~gcs~fp~fS~lYWl~gn~~s~~d~~~~~hy~e~~~~~~~~~~~~~~~~~~l~l~~vt~~~~~T~~TCVL 115 (141)
T PHA03112 36 KETEKVVLECRGCSYFPKFSYVYWLIGNNKSDVDQKPIEHYGEGIYESEKPRTCDNEPRTDLIVYNVTDEMKFTKLTCVL 115 (141)
T ss_pred CCCCEEEEEEECccCCCCceEEEEEcCCCccchhccccccccccccCCccccccCCcceeEEEEEecCCcceecceEEEE
Confidence 689999999999865 54 479999765 2211 01111111111 4777888854 444899998
Q ss_pred EcCCCCcee
Q psy12061 63 TNVHGMDES 71 (626)
Q Consensus 63 ~n~~g~~~~ 71 (626)
....|....
T Consensus 116 ~D~~~~~k~ 124 (141)
T PHA03112 116 MDLDGPIKK 124 (141)
T ss_pred ecCCchhhH
Confidence 877665443
No 461
>KOG1026|consensus
Probab=75.72 E-value=0.99 Score=46.99 Aligned_cols=161 Identities=17% Similarity=0.199 Sum_probs=98.5
Q ss_pred CCceEEEEeeeCCCCCCeeEEEeCCEEccCCCc----EEEccCCcEEEccCCCCCCEEEEEEEEcCCCCceeeEEEEEEe
Q psy12061 4 EGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGR----RKIFENGNLLISPVSRDDSGIYSCTATNVHGMDESKGRLIVLH 79 (626)
Q Consensus 4 ~G~~~~l~C~~~g~p~p~i~W~~~~~~i~~~~~----~~~~~~g~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~ 79 (626)
.|+...+.|.+.+.+...+.|.++..++...-+ .....+..|.+.+....+.|.+.|.+.+..-.......+.+..
T Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~l~~~~~ 145 (774)
T KOG1026|consen 66 FIENGQLLCIVSGNDVENYTGLRNLTIVVSGLRFSQPRAFHYNSRLRRDNLSTNDTGVLGSLSTNGFETLSLTELSLVGN 145 (774)
T ss_pred HHhhhhhcccccCCCcccchhhhccCcccchhheecccceeccccccccccchhhhccccccccccccccccchhhhccC
Confidence 467778899999987779999998776643211 1111223477777777788888888877644433322222211
Q ss_pred CCcee---------------------------------------------eeCCCceEEecCCcEEEEEEecccCCccee
Q psy12061 80 GPSYY---------------------------------------------EQLPPKITIAAHRNLQLRCSAHTEELLDVA 114 (626)
Q Consensus 80 ~p~~~---------------------------------------------~~~~~~~~v~~g~~~~l~C~~~~~p~p~~~ 114 (626)
++... .....+..+..|.++++.|...+.|.|.+
T Consensus 146 ~~~~~~~~~~~~~~~e~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~c~~~~~~vp~~- 224 (774)
T KOG1026|consen 146 PFTCSCSIRWLDRYREDGFCVPYRGLACLNFLSNGTVANESIQLCGEIENRIRAANLTVEEGSSITLKCSQAGIPVPCH- 224 (774)
T ss_pred CCCcchhhhHHhhhcccCCCCCchhhHHHhhcCCceehhhhhhhhcchhhhhhhhhhhhcccchheeeeecccCCCcce-
Confidence 11000 00012357788999999999999998854
Q ss_pred EEEeeCCEEeccccCCccCCCeeEecCCeEEEeecCCCCCEeEEEEEEeCCCceEEEEEEEEeCC
Q psy12061 115 YIWTHNGVRIGNMDLNELETPNINIDGGLLEITNASFADAGEYECVVKSTVGKISTKTTVIVEGP 179 (626)
Q Consensus 115 i~W~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~a~n~~g~~~~~~~l~v~~~ 179 (626)
.|..+.......... .... .+-...+.+ +.|.+.|..|.....+.+.+..+
T Consensus 225 -~~~~~~~~~~~~~~~----~~~c-~~~~~~~~~--------~~c~~E~~~~~~~~~v~~~~~~p 275 (774)
T KOG1026|consen 225 -YWFPNCLASSNTNQT----SSLC-RSECEVLEN--------DLCIAENAVARSNPSILLVVDLP 275 (774)
T ss_pred -eeecccccccCCCcc----cccc-cccceeeec--------hhhHHHHhhhhcCceeeeEEecc
Confidence 899887776543210 0000 111111111 89999999998887777776655
No 462
>PHA03240 envelope glycoprotein M; Provisional
Probab=74.40 E-value=5.3 Score=33.82 Aligned_cols=60 Identities=23% Similarity=0.343 Sum_probs=36.8
Q ss_pred CCCCceEEEEeeeCCCCCCeeEEEe--------CC---EEcc---C--CCcE-------------EEccCCcEEEccCCC
Q psy12061 2 AGEGGNVTIFCNPEAAPKPKFVWKK--------DG---NIIG---S--GGRR-------------KIFENGNLLISPVSR 52 (626)
Q Consensus 2 ~~~G~~~~l~C~~~g~p~p~i~W~~--------~~---~~i~---~--~~~~-------------~~~~~g~L~i~~v~~ 52 (626)
+.+|+.|+|.-.---.|.-.+.|++ +| .+|- . .+|. ..-.+.+|.|.+|+.
T Consensus 35 ~r~G~nVTLga~~~lhpgq~v~Wy~~~c~~~~G~G~~~~plC~Ytppk~~r~ktl~~t~~nt~i~y~C~NstL~i~~vn~ 114 (258)
T PHA03240 35 TREGDPLLLGGGHGLGAGQKAHWYKHKCDGITGNGDKLHPICTYDPPKNGKGKTLDESAENSFILYECHNSTLIIAHLNL 114 (258)
T ss_pred cccCCceeeCCcccCCCCCEEEEEeeecccccCCCCCCceeEEecCCccccccccccccCCCceEEEeccceEEEEEEee
Confidence 4688999986443223555899998 11 2221 0 1111 112356799999999
Q ss_pred CCCEEEEEE
Q psy12061 53 DDSGIYSCT 61 (626)
Q Consensus 53 ~d~G~Y~C~ 61 (626)
+|+|.|.-.
T Consensus 115 sd~~nYcr~ 123 (258)
T PHA03240 115 SDAGEYCRK 123 (258)
T ss_pred cCcchhhhc
Confidence 999999433
No 463
>PF06832 BiPBP_C: Penicillin-Binding Protein C-terminus Family; InterPro: IPR009647 This conserved region of approximately 90 residues is found in a sub-group of bacterial Penicillin-Binding Proteins (PBPs). A variable length loop region separates this region from the transpeptidase unit (IPR001460 from INTERPRO). It is predicted to be a beta fold.
Probab=73.98 E-value=32 Score=25.16 Aligned_cols=56 Identities=20% Similarity=0.182 Sum_probs=35.6
Q ss_pred cEEEEEEecccCCcceeEEEeeCCEEeccccCCccCCCeeEecCCeEEEeecCCCCCEeEEEEEEeCCCceEE
Q psy12061 98 NLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEITNASFADAGEYECVVKSTVGKIST 170 (626)
Q Consensus 98 ~~~l~C~~~~~p~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~a~n~~g~~~~ 170 (626)
.-.|.+.+.+. .. .+.|+.||..+.... ....+. +.....|.|+..+.+..|....
T Consensus 31 ~~~l~l~a~~~-~~--~~~W~vdg~~~g~~~-----------~~~~~~---~~~~~~G~h~l~vvD~~G~~~~ 86 (89)
T PF06832_consen 31 RQPLVLKAAGG-RG--PVYWFVDGEPLGTTQ-----------PGHQLF---WQPDRPGEHTLTVVDAQGRSAS 86 (89)
T ss_pred cceEEEEEeCC-CC--cEEEEECCEEcccCC-----------CCCeEE---eCCCCCeeEEEEEEcCCCCEEE
Confidence 44445555554 22 458999999994332 122333 2336789999999998887654
No 464
>TIGR00868 hCaCC calcium-activated chloride channel protein 1. distributions. found a row in 1A13.INFO that was not parsed out
Probab=70.57 E-value=1.7e+02 Score=32.16 Aligned_cols=88 Identities=17% Similarity=0.152 Sum_probs=52.1
Q ss_pred CCceeEeecCCcCeEEEEEeeCCCCCcccCcceEEEEEEecC---CCcceeee------e-e-eecceeeEEEEeCCC--
Q psy12061 290 APSRIGGGGGKIGDLSISWEPLPREKQNAPNIYYKIFWRKKN---DTEFQSET------L-K-EYGNVGIAVVRIPSE-- 356 (626)
Q Consensus 290 ~p~~~~~~~~~~~~v~l~W~~~~~~~~~~~~~~y~i~~~~~~---~~~~~~~~------~-~-~~~~~~~~~~~~~~L-- 356 (626)
.-.+|.+.. ....|.|+|+.|..+...+....|.|.+...- ...+.... + + ..+......+...+.
T Consensus 758 rItDL~~~~-~~~~v~LsWTAPG~d~D~G~a~~y~ir~s~~~~~l~~~f~~a~~vn~~~~~P~~ags~e~~~f~~~~~~~ 836 (863)
T TIGR00868 758 KITDLEAGF-QGDNIILTWTAPGDVLDHGRADRYIIRISTSILDLRDDFNDATQVNTTDLIPKEANSKEVFVFKPEGIPI 836 (863)
T ss_pred cceeeEEee-cCCEEEEEeeCCCccCCCCccceEEEEecCCHHHHHhhhccccccccCCcCCCCCCceeEEEEeCCcccc
Confidence 334565533 34569999999665557788889999886542 11111110 0 1 112223444555553
Q ss_pred cceeEEEEEEEEecCCC-CCCCC
Q psy12061 357 FYYTEYEVKVQAINDVG-PGPES 378 (626)
Q Consensus 357 ~p~~~Y~~~v~a~n~~g-~~~~s 378 (626)
+.++.|.|-++|++..| .|..|
T Consensus 837 ~~~~~~~~ai~a~d~~~~~s~~s 859 (863)
T TIGR00868 837 ENGTDLFIAVQAIDKANLTSEVS 859 (863)
T ss_pred cCCeEEEEEEEEEcccccccccc
Confidence 35788999999999887 34434
No 465
>PF02440 Adeno_E3_CR1: Adenovirus E3 region protein CR1; InterPro: IPR003471 Early region 3 (E3) of human adenoviruses (Ads) codes for proteins that appear to control viral interactions with the host []. This region called CR1 (conserved region 1) [] is found three times in Human adenovirus 19 (a subgroup D virus) 49 Kd protein in the E3 region. CR1 is also found in the 20.1 Kd protein of subgroup B adenoviruses. The function of this 80 amino acid region is unknown. This region is probably a divergent immunoglobulin domain.
Probab=65.23 E-value=13 Score=24.91 Aligned_cols=51 Identities=27% Similarity=0.453 Sum_probs=28.2
Q ss_pred CCCCceEEEEeeeCCCCCCeeEEEe---C--CEEccCCCcEE------EccCCcEEEccCCCCCCE
Q psy12061 2 AGEGGNVTIFCNPEAAPKPKFVWKK---D--GNIIGSGGRRK------IFENGNLLISPVSRDDSG 56 (626)
Q Consensus 2 ~~~G~~~~l~C~~~g~p~p~i~W~~---~--~~~i~~~~~~~------~~~~g~L~i~~v~~~d~G 56 (626)
|..|++++|. |-|...|.|+| + ...+-...... .-.+-+|+|-+|+..++|
T Consensus 2 v~~G~N~TL~----Gp~~~~V~Wy~~~~~~~~~~lC~g~~~~~~~l~~tCn~qNLTLinVt~~~~G 63 (63)
T PF02440_consen 2 VTVGSNVTLV----GPPDGPVTWYKFHSDGDFKKLCNGNKTKHPELNHTCNGQNLTLINVTKTYNG 63 (63)
T ss_pred EeEcCcEEEe----CCCCCceEEEEecCCCCccccCCCCCccccceEeEecCCeEEEEEecccccC
Confidence 5578888874 44545799994 2 23343222221 112335777777776654
No 466
>PF07353 Uroplakin_II: Uroplakin II; InterPro: IPR009952 This family contains uroplakin II, which is approximately 180 residues long and seems to be restricted to mammals. Uroplakin II is an integral membrane protein, and is one of the components of the apical plaques of mammalian urothelium formed by the asymmetric unit membrane - this is believed to play a role in strengthening the urothelial apical surface to prevent the cells from rupturing during bladder distension [].; GO: 0016044 cellular membrane organization, 0030176 integral to endoplasmic reticulum membrane
Probab=65.09 E-value=3.6 Score=32.93 Aligned_cols=39 Identities=21% Similarity=0.289 Sum_probs=26.4
Q ss_pred ccceEEecCCCCCceEEEEEEEEecCCCCCCCCCcEEEeec
Q psy12061 552 NTLDADIVDLSPGKRYHMRVLAFSNGGDGRMSSPAITFQMG 592 (626)
Q Consensus 552 ~~~~~~l~~L~p~~~Y~~~V~a~~~~G~g~~s~~~~~~~~~ 592 (626)
.-..|.+.+|.||+.|+|+-...+. .+..|+..+...+.
T Consensus 100 rlsaYqVtNL~pGTkY~isY~Vtkg--tstESS~~i~msT~ 138 (184)
T PF07353_consen 100 RLSAYQVTNLQPGTKYYISYLVTKG--TSTESSNEIPMSTL 138 (184)
T ss_pred cceeEEeeccCCCcEEEEEEEEecC--ccceecceeccccc
Confidence 4456899999999999998877655 33334444444433
No 467
>PF13750 Big_3_3: Bacterial Ig-like domain (group 3)
Probab=64.51 E-value=83 Score=26.21 Aligned_cols=33 Identities=21% Similarity=0.350 Sum_probs=25.1
Q ss_pred ecCCCCCceEEEEEEEEecCCCCCCCCCcEEEeec
Q psy12061 558 IVDLSPGKRYHMRVLAFSNGGDGRMSSPAITFQMG 592 (626)
Q Consensus 558 l~~L~p~~~Y~~~V~a~~~~G~g~~s~~~~~~~~~ 592 (626)
+..|+++..|.+.|.|.+.+|.-.. ..+.|.-.
T Consensus 116 fpsle~~~~YtLtV~a~D~aGN~~~--~si~F~y~ 148 (158)
T PF13750_consen 116 FPSLEADDSYTLTVSATDKAGNQST--KSISFSYM 148 (158)
T ss_pred cCCcCCCCeEEEEEEEEecCCCEEE--EEEEEEEe
Confidence 3578899999999999999886542 33556554
No 468
>PF00801 PKD: PKD domain; InterPro: IPR000601 The PKD (Polycystic Kidney Disease) domain was first identified in the Polycystic Kidney Disease protein, polycystin-1 (PDK1 gene), and contains an Ig-like fold consisting of a beta-sandwich of seven strands in two sheets with a Greek key topology, although some members have additional strands []. Polycystin-1 is a large cell-surface glycoprotein involved in adhesive protein-protein and protein-carbohydrate interactions; however it is not clear if the PKD domain mediates any of these interactions. PKD domains are also found in other proteins, usually in the extracellular parts of proteins involved in interactions with other proteins. For example, domains with a PKD-type fold are found in archaeal surface layer proteins that protect the cell from extreme environments [], and in the human VPS10 domain-containing receptor SorCS2 [].; PDB: 1B4R_A 2KZW_A 2C4X_A 2C26_A 2Y72_B 3JQU_A 3JS7_B 1WGO_A 1L0Q_A.
Probab=63.90 E-value=24 Score=24.20 Aligned_cols=56 Identities=20% Similarity=0.360 Sum_probs=33.1
Q ss_pred CCCCceEEEEeeeCCCCCCeeEEEeCC-EEccCCCcEEEccCCcEEEccCCCCCCEEEEE--EEEcCCCC
Q psy12061 2 AGEGGNVTIFCNPEAAPKPKFVWKKDG-NIIGSGGRRKIFENGNLLISPVSRDDSGIYSC--TATNVHGM 68 (626)
Q Consensus 2 ~~~G~~~~l~C~~~g~p~p~i~W~~~~-~~i~~~~~~~~~~~g~L~i~~v~~~d~G~Y~C--~a~n~~g~ 68 (626)
+..|+.++|...........+.|..++ .....+ .+.. ......|.|.- .|.|..|.
T Consensus 8 ~~~g~~v~f~~~~~~g~~~~y~W~fgd~~~~~~~--------~~~t---~ty~~~G~y~V~ltv~n~~g~ 66 (69)
T PF00801_consen 8 VPTGQPVTFTASSSDGSPVTYSWDFGDNGTVSTG--------SSVT---HTYSSPGTYTVTLTVTNGVGS 66 (69)
T ss_dssp EBTTSEEEEEETTTTSSECEEEEE-SSESEEECS--------SEEE---EEESSSEEEEEEEEEEETTSE
T ss_pred EcCCCEEEEEEEccCCCCeEEEEEECCCCccccC--------CCEE---EEcCCCeEEEEEEEEEECCCC
Confidence 567999999999933334599999988 211111 1111 23445888865 45566554
No 469
>PF13754 Big_3_4: Bacterial Ig-like domain (group 3)
Probab=62.14 E-value=32 Score=22.28 Aligned_cols=33 Identities=24% Similarity=0.257 Sum_probs=23.0
Q ss_pred EEEeCCccCceEEEEEEEeeCCCCCCCCccEEEe
Q psy12061 454 ALIVGLQPDTKYYVKVMAYNNAGEGPESERYLER 487 (626)
Q Consensus 454 ~~i~~L~p~t~Y~v~V~a~~~~g~s~~s~~~~~~ 487 (626)
+.+..+ ....|.++|+|.+.+|.........|.
T Consensus 16 ~t~~~~-~dG~y~itv~a~D~AGN~s~~~~~~~t 48 (54)
T PF13754_consen 16 FTVPAL-ADGTYTITVTATDAAGNTSTSSSVTFT 48 (54)
T ss_pred EeCCCC-CCccEEEEEEEEeCCCCCCCccceeEE
Confidence 445555 677999999999999986544333333
No 470
>cd05890 Ig2_Nectin-1_like Second immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111) and similar proteins. Ig2_Nectin-1_like: domain similar to the second immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111). Nectin-1 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectins also heterophilically trans-interact with other CAMs such as nectin-like molecules (necls); nectin-1 for example, has been shown to trans-interact with necl-1. Nectins also interact with various other proteins, including the actin filament (F-actin)-binding protein, afadin. Mutation in the human nectin-1 gene is associ
Probab=59.40 E-value=43 Score=24.69 Aligned_cols=56 Identities=14% Similarity=0.281 Sum_probs=33.3
Q ss_pred eEEEEee-eCCCCCCeeEEEe--CCEEccCCCcEEEccCCc------EEEccCCCCCCEEEEEEEEcC
Q psy12061 7 NVTIFCN-PEAAPKPKFVWKK--DGNIIGSGGRRKIFENGN------LLISPVSRDDSGIYSCTATNV 65 (626)
Q Consensus 7 ~~~l~C~-~~g~p~p~i~W~~--~~~~i~~~~~~~~~~~g~------L~i~~v~~~d~G~Y~C~a~n~ 65 (626)
.+.-.|. +.|.|++.|+|.- +|.. ..+..-..+|+ +.+-.....|.-.-+|++.-.
T Consensus 22 v~VA~CiSa~GrPpa~ItW~t~l~G~~---etq~~~~~~GT~TV~S~y~lVPs~~~~gk~lTCvV~h~ 86 (98)
T cd05890 22 MLVATCVSANGKPPSVVRWDTRLKGEA---EFQEIRNQNGTVTVISRYRLVPSREAHKQKLTCIVNYR 86 (98)
T ss_pred EEEEEEEcCCCcCCcEeEEEccCCCce---eeeeeCCCCCCEEEEEEEEEeECHHHcCCEeEEEEEec
Confidence 4455798 5788999999995 3332 11111122342 333334556777899999765
No 471
>KOG0200|consensus
Probab=59.24 E-value=39 Score=35.75 Aligned_cols=125 Identities=22% Similarity=0.186 Sum_probs=67.2
Q ss_pred cCCcEEEccCCCCCCEEEEEEEEcCCCCceeeEEEE--EEeCCceeeeCCCceEEecCCcEEEEEEecccCCcceeEEEe
Q psy12061 41 ENGNLLISPVSRDDSGIYSCTATNVHGMDESKGRLI--VLHGPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWT 118 (626)
Q Consensus 41 ~~g~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~--v~~~p~~~~~~~~~~~v~~g~~~~l~C~~~~~p~p~~~i~W~ 118 (626)
..+.+.+..+...|.|.|+|.+.| . .....+. +...+......+....+..+....+.+ ..+.+ .+.|.
T Consensus 11 ~~~~~~~~~~~~~~~~~y~~~~~~--~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~--~~~~~ 81 (609)
T KOG0200|consen 11 NHWFLIIDSVVPGDKGFYTCLVSN--I--NLIISLDDIVIHRPILLAGENANPNTVVTVGVPLAF---SIPQP--FIKWG 81 (609)
T ss_pred ccceEEEEEEEecCCccEEEEEec--C--ceeeEeecccCcccccccCCCCCcceeecccceeee---ecCCC--cceee
Confidence 455788999999999999999999 1 1111111 111122333345555666677777622 22222 33676
Q ss_pred eCCEEec---cccCCc---------cCCCeeEecCCeEEEeecCCCCCEeEEEEEEeCCCceEEEEEE
Q psy12061 119 HNGVRIG---NMDLNE---------LETPNINIDGGLLEITNASFADAGEYECVVKSTVGKISTKTTV 174 (626)
Q Consensus 119 ~~~~~~~---~~~~~~---------~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~a~n~~g~~~~~~~l 174 (626)
+...... ...... ............+.+.++...+.+.|.|...+..+.......+
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (609)
T KOG0200|consen 82 TNLEIECEDGLFEYKTKKTLSFVEIEYNRLVDGTFESGLIYNVSLTEAGEYLCWTGRTVGDGPNKAFL 149 (609)
T ss_pred eeecccccccCcchhheeeeeeeeccccccccCceEeeeeeccChhhcceeeccCCCcccccccceEE
Confidence 6543211 000000 0000001233468889999999999999887644443333333
No 472
>KOG1948|consensus
Probab=58.69 E-value=2.7e+02 Score=30.22 Aligned_cols=22 Identities=27% Similarity=0.342 Sum_probs=19.3
Q ss_pred EEEEeCCCcceeEEEEEEEEec
Q psy12061 349 AVVRIPSEFYYTEYEVKVQAIN 370 (626)
Q Consensus 349 ~~~~~~~L~p~~~Y~~~v~a~n 370 (626)
-.+.+.+|.|++.|++++.+.-
T Consensus 946 G~yRiRGL~Pdc~Y~V~vk~~~ 967 (1165)
T KOG1948|consen 946 GTYRIRGLLPDCEYQVHVKSYA 967 (1165)
T ss_pred CcEEEeccCCCceEEEEEeecc
Confidence 3578999999999999999884
No 473
>PF10342 GPI-anchored: Ser-Thr-rich glycosyl-phosphatidyl-inositol-anchored membrane family; InterPro: IPR018466 This entry represents glycoproteins involved in cell wall (1-->6)-beta-glucan assembly. In yeast a null mutation leads to severe growth defects, aberrant multi-budded morphology, and mating defects [, ]. The entry includes DRMIP and Hesp-379, which are involved in both fruiting body formation and in host attack respectively. Hesp-379 is a haustorially expressed secreted protein; the haustorium being the small sucker that penetrates host tissue [].
Probab=56.81 E-value=48 Score=24.31 Aligned_cols=62 Identities=15% Similarity=0.225 Sum_probs=35.8
Q ss_pred CCCEEEEEEeecCCCCCCCceeeEEEEEEEeccCCccccceeeec----CccceEEe-cCCCCCceEEEEEE
Q psy12061 506 NPTTVHVTWRYVSPSFEEEPIIGYKVRVWEVDQDMSRANDTIIPV----GNTLDADI-VDLSPGKRYHMRVL 572 (626)
Q Consensus 506 ~~~~~~l~W~~~~~~~~~~~i~~Y~i~~~~~~~~~~~~~~~~~~~----~~~~~~~l-~~L~p~~~Y~~~V~ 572 (626)
....+.|+|+. .. .....|.|.++............+... .....+.+ .+|.++..|.|++.
T Consensus 11 ~g~~~~I~W~~--~~---~~~~~~~I~L~~g~~~~~~~~~~ia~~v~~~~gs~~~~~p~~l~~~~~Y~i~~~ 77 (93)
T PF10342_consen 11 AGQPITITWTS--DG---TDPGNVTIYLCNGNNTNLNFVQTIASNVSNSDGSYTWTIPSDLPSGGDYFIQIV 77 (93)
T ss_pred CCCcEEEEEeC--CC---CCCcEEEEEEEcCCCCCcceeEEEEecccCCCCEEEEEcCCCCCCCCcEEEEEE
Confidence 34679999993 22 122567887766655221112222111 13445555 56999999999888
No 474
>PF09423 PhoD: PhoD-like phosphatase; InterPro: IPR018946 This entry contains a number of putative proteins as well as Alkaline phosphatase D which catalyses the reaction: A phosphate monoester + H(2)O = an alcohol + phosphate ; PDB: 2YEQ_B.
Probab=56.15 E-value=89 Score=31.66 Aligned_cols=52 Identities=17% Similarity=0.019 Sum_probs=22.8
Q ss_pred eEEEEeCCCcceeEEEEEEEEecCCCCCCCCccEEEEccCCCCCCCCCceEEEeeecc
Q psy12061 348 IAVVRIPSEFYYTEYEVKVQAINDVGPGPESEVVTIFSAEDMPQVAPQGVFSRGFNST 405 (626)
Q Consensus 348 ~~~~~~~~L~p~~~Y~~~v~a~n~~g~~~~s~~~~~~t~~~~p~~~p~~~~~~~~~~~ 405 (626)
...+.+++|+|++.|.|++..... +..+..-.++|. |...+..+++...+..
T Consensus 63 t~~v~v~gL~p~t~Y~Y~~~~~~~---~~~s~~g~~rT~---p~~~~~~~r~a~~SC~ 114 (453)
T PF09423_consen 63 TVKVDVTGLQPGTRYYYRFVVDGG---GQTSPVGRFRTA---PDGDPDPFRFAFGSCQ 114 (453)
T ss_dssp EEEEEE-S--TT-EEEEEEEE--T---TEE---EEEE-----TT-----EEEEEE---
T ss_pred EeecccCCCCCCceEEEEEEEecC---CCCCCceEEEcC---CCCCCCceEEEEECCC
Confidence 456789999999999999999322 233555567775 4333444655544443
No 475
>PF09191 CD4-extracel: CD4, extracellular; InterPro: IPR015274 This domain adopts an immunoglobulin-like beta-sandwich with seven strands in 2 beta sheets, in a Greek key topology. It is predominantly found in the extracellular portion of CD4 proteins, where it enables interaction with major histocompatibility complex class II antigens []. ; PDB: 1WIQ_B 1WIP_B 1WIO_A 3T0E_E 1CID_A.
Probab=55.60 E-value=82 Score=23.50 Aligned_cols=77 Identities=18% Similarity=0.201 Sum_probs=38.4
Q ss_pred CCCCCceEEEEeeeCCC---CCCeeEEEeCCEE----------------cc---CCCcEEEccCC--cEEEccCCCCCCE
Q psy12061 1 YAGEGGNVTIFCNPEAA---PKPKFVWKKDGNI----------------IG---SGGRRKIFENG--NLLISPVSRDDSG 56 (626)
Q Consensus 1 ~~~~G~~~~l~C~~~g~---p~p~i~W~~~~~~----------------i~---~~~~~~~~~~g--~L~i~~v~~~d~G 56 (626)
|..+|+.+.|.....=. -.-+..|.-+|.. +. .+-+..+...- +|++..+.+.++|
T Consensus 8 YkkeGe~vefSFPL~f~dE~L~GEL~WqaegasS~q~WitFsl~n~kvsv~~~~~~~Klqm~e~lPL~ltL~q~l~q~AG 87 (108)
T PF09191_consen 8 YKKEGEQVEFSFPLNFEDENLSGELRWQAEGASSSQSWITFSLKNKKVSVQKVTQDPKLQMKEKLPLTLTLPQALPQYAG 87 (108)
T ss_dssp EEETCS-EEEE-----SS-SCEEEEEEEESSSSSS--EEEEEEETTEEEEECEETSST-EE-SCTT-EEEESSB-GGG-E
T ss_pred eeccCcEEEEecccccCccccceEEEEEecCCCCCCCcEEEEEeCCeEEEeecCCCcccccccCCceEEEccccChhhcC
Confidence 67788888887664211 1125566544432 11 12222222111 5889999999998
Q ss_pred EEEEEEEcCCCCceeeEEEEE
Q psy12061 57 IYSCTATNVHGMDESKGRLIV 77 (626)
Q Consensus 57 ~Y~C~a~n~~g~~~~~~~l~v 77 (626)
.=.....-..|.......|.|
T Consensus 88 SGnltL~L~~G~L~QeVnLVV 108 (108)
T PF09191_consen 88 SGNLTLTLDKGKLHQEVNLVV 108 (108)
T ss_dssp EEEEEEEBTTSEEEEEEEEEE
T ss_pred CceEEEEecCCcEeeEEEeeC
Confidence 777777666666555555543
No 476
>smart00089 PKD Repeats in polycystic kidney disease 1 (PKD1) and other proteins. Polycystic kidney disease 1 protein contains 14 repeats, present elsewhere such as in microbial collagenases.
Probab=54.21 E-value=74 Score=22.35 Aligned_cols=63 Identities=19% Similarity=0.350 Sum_probs=36.5
Q ss_pred CCceEEEEeeeCC-CCCCeeEEEeCCEEccCCCcEEEccCCcEEEccCCCCCCEEEEE--EEEcCCCCceeeEEEEE
Q psy12061 4 EGGNVTIFCNPEA-APKPKFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSC--TATNVHGMDESKGRLIV 77 (626)
Q Consensus 4 ~G~~~~l~C~~~g-~p~p~i~W~~~~~~i~~~~~~~~~~~g~L~i~~v~~~d~G~Y~C--~a~n~~g~~~~~~~l~v 77 (626)
.|+.+.|.+...+ .....+.|..++...... .+. .......|.|.- .+.|..|.......+.|
T Consensus 13 ~~~~v~f~~~~~~~~~~~~~~W~fgdg~~~~~--------~~~---~~~y~~~G~y~v~l~v~n~~g~~~~~~~i~v 78 (79)
T smart00089 13 AGESVTFTATSSDDGSIVSYTWDFGDGTSSTG--------PTV---THTYTKPGTYTVTLTVTNAVGSASATVTVVV 78 (79)
T ss_pred CCCEEEEEEECCCCCCeEEEEEEeCCCCccCC--------CCE---EEEeCCCcEEEEEEEEEcCCCcEEEEEEEEE
Confidence 5889999998876 334588998744322111 111 224457788854 45677774444444443
No 477
>PF15096 G6B: G6B family
Probab=53.89 E-value=15 Score=30.44 Aligned_cols=73 Identities=29% Similarity=0.467 Sum_probs=40.8
Q ss_pred CCCCceEEEEeeeCCCCCCeeEEE----------eCCEEcc---------------CCCcEEEccCCc--EEEccCCCCC
Q psy12061 2 AGEGGNVTIFCNPEAAPKPKFVWK----------KDGNIIG---------------SGGRRKIFENGN--LLISPVSRDD 54 (626)
Q Consensus 2 ~~~G~~~~l~C~~~g~p~p~i~W~----------~~~~~i~---------------~~~~~~~~~~g~--L~i~~v~~~d 54 (626)
.+.|+.|.|.|..-..|. ...|- |+-++|- ..+|.+.+..|. |.+- ++..|
T Consensus 8 GrPGDRVnlSCvGVs~p~-RWaWAPsFPaCkGLskGRRPilWASssgtpTv~p~~pFaGRLR~ld~GIrrLELL-Ls~GD 85 (224)
T PF15096_consen 8 GRPGDRVNLSCVGVSHPI-RWAWAPSFPACKGLSKGRRPILWASSSGTPTVPPLQPFAGRLRSLDPGIRRLELL-LSAGD 85 (224)
T ss_pred CCCCCeeeeeeccCCCcc-eeeeccCCccccccccCCcceEEecCCCCCCCCcccccchhhhccchhHHHHHHH-hhcCC
Confidence 368999999999876643 44443 2222321 123444444441 1111 45689
Q ss_pred CEEEEEEEEcCCCCceeeEEEEEEe
Q psy12061 55 SGIYSCTATNVHGMDESKGRLIVLH 79 (626)
Q Consensus 55 ~G~Y~C~a~n~~g~~~~~~~l~v~~ 79 (626)
+|.|.|.-. .+..+...|.|..
T Consensus 86 SGTFfCkGr---~e~ESRT~LhVLG 107 (224)
T PF15096_consen 86 SGTFFCKGR---QEEESRTVLHVLG 107 (224)
T ss_pred ccceEecCc---ccccceeeeeeec
Confidence 999999932 2344556666643
No 478
>smart00089 PKD Repeats in polycystic kidney disease 1 (PKD1) and other proteins. Polycystic kidney disease 1 protein contains 14 repeats, present elsewhere such as in microbial collagenases.
Probab=53.71 E-value=76 Score=22.31 Aligned_cols=64 Identities=19% Similarity=0.358 Sum_probs=37.6
Q ss_pred cCCcEEEEEEecccCCcceeEEEeeCCEEeccccCCccCCCeeEecCCeEEEeecCCCCCEeEEEEE--EeCCCceEEEE
Q psy12061 95 AHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEITNASFADAGEYECVV--KSTVGKISTKT 172 (626)
Q Consensus 95 ~g~~~~l~C~~~~~p~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~a--~n~~g~~~~~~ 172 (626)
.+.++.|.+...+. ...+.+.|...+...... ... .......|.|+..+ .|..|..+...
T Consensus 13 ~~~~v~f~~~~~~~-~~~~~~~W~fgdg~~~~~--------------~~~---~~~y~~~G~y~v~l~v~n~~g~~~~~~ 74 (79)
T smart00089 13 AGESVTFTATSSDD-GSIVSYTWDFGDGTSSTG--------------PTV---THTYTKPGTYTVTLTVTNAVGSASATV 74 (79)
T ss_pred CCCEEEEEEECCCC-CCeEEEEEEeCCCCccCC--------------CCE---EEEeCCCcEEEEEEEEEcCCCcEEEEE
Confidence 78889999987764 334688997643321110 111 22335677777655 67777555555
Q ss_pred EEEE
Q psy12061 173 TVIV 176 (626)
Q Consensus 173 ~l~v 176 (626)
.+.|
T Consensus 75 ~i~v 78 (79)
T smart00089 75 TVVV 78 (79)
T ss_pred EEEE
Confidence 5554
No 479
>KOG3611|consensus
Probab=52.99 E-value=19 Score=38.36 Aligned_cols=58 Identities=21% Similarity=0.418 Sum_probs=41.7
Q ss_pred eEEEEeeeCCCCCCeeEEEe--CC----EEccCCCcEEEccCCcEEEccCCCCCCEEEEEEEEcC
Q psy12061 7 NVTIFCNPEAAPKPKFVWKK--DG----NIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTATNV 65 (626)
Q Consensus 7 ~~~l~C~~~g~p~p~i~W~~--~~----~~i~~~~~~~~~~~g~L~i~~v~~~d~G~Y~C~a~n~ 65 (626)
...|.|...+.-. .+.|+. .+ .++...++......|-|.+..++..|.|.|.|.+...
T Consensus 571 ~~~l~c~~~~~~a-~~~w~~~~~~~~~~~~~~~~~~~~~~~~G~lll~~~q~~~~G~y~c~~~e~ 634 (737)
T KOG3611|consen 571 SEVLRCVPSSNQA-PVVWYHQSTKDGRKEEVRQRDVVSRTDEGGLVLLSVQKLDGGTYPCYADES 634 (737)
T ss_pred cceeecccccccc-ceeeEeeccCccccceeccCcceeecccCceeEEEEeeccCcccccccccC
Confidence 4678898877544 489983 22 2444455555555676889999999999999999754
No 480
>PHA03286 envelope glycoprotein E; Provisional
Probab=52.22 E-value=2.5e+02 Score=27.79 Aligned_cols=76 Identities=14% Similarity=0.091 Sum_probs=47.2
Q ss_pred cEEEccCCCCCCEEEEEEEEcCCCCceee-EEEEEEe-----CCcee-------------eeCCCceEEecCCcEEEEEE
Q psy12061 44 NLLISPVSRDDSGIYSCTATNVHGMDESK-GRLIVLH-----GPSYY-------------EQLPPKITIAAHRNLQLRCS 104 (626)
Q Consensus 44 ~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~-~~l~v~~-----~p~~~-------------~~~~~~~~v~~g~~~~l~C~ 104 (626)
.|.|.+++..++|.|.-...|..|..... +.|.|.. +|... ........-.+||++.+.-.
T Consensus 128 ~L~I~nAt~qnaGiYtly~rnd~~~~~~~vflVtV~~~~~~r~p~~~~pv~p~~~~~~f~l~ny~S~lF~~GDTF~vSv~ 207 (492)
T PHA03286 128 ELTILNASSQNAGIYIRYSRNGTRTAVMDVLVVWVSGHGRARDPTMNIPITPPSTRVDLSLKNFKAFLYNVGDTVDASVT 207 (492)
T ss_pred ceEEeeccccccceEEEEEcCCCCcEEEEEEEEEEecCCCCCCCCcccCCCCcccceEEEEecccceEecCCCeEEEEEE
Confidence 49999999999999999999887775443 5666632 11111 11123345567888876655
Q ss_pred ecc---cCCcceeEEEee
Q psy12061 105 AHT---EELLDVAYIWTH 119 (626)
Q Consensus 105 ~~~---~p~p~~~i~W~~ 119 (626)
..- ..+=.+++.|+.
T Consensus 208 l~~~~~d~~Fsl~i~W~y 225 (492)
T PHA03286 208 AHLTNWAGAFSLEFRVLF 225 (492)
T ss_pred EeecccCCCceEEEEEEE
Confidence 441 112235567765
No 481
>PF10342 GPI-anchored: Ser-Thr-rich glycosyl-phosphatidyl-inositol-anchored membrane family; InterPro: IPR018466 This entry represents glycoproteins involved in cell wall (1-->6)-beta-glucan assembly. In yeast a null mutation leads to severe growth defects, aberrant multi-budded morphology, and mating defects [, ]. The entry includes DRMIP and Hesp-379, which are involved in both fruiting body formation and in host attack respectively. Hesp-379 is a haustorially expressed secreted protein; the haustorium being the small sucker that penetrates host tissue [].
Probab=51.75 E-value=93 Score=22.75 Aligned_cols=62 Identities=15% Similarity=0.103 Sum_probs=36.7
Q ss_pred CeEEEEEeeCCCCCcccCcceEEEEEEecCCC---cceeeeeeeecceeeEEEEe-CCCcceeEEEEEEEE
Q psy12061 302 GDLSISWEPLPREKQNAPNIYYKIFWRKKNDT---EFQSETLKEYGNVGIAVVRI-PSEFYYTEYEVKVQA 368 (626)
Q Consensus 302 ~~v~l~W~~~~~~~~~~~~~~y~i~~~~~~~~---~~~~~~~~~~~~~~~~~~~~-~~L~p~~~Y~~~v~a 368 (626)
..++|.|+... .....|.|........ .................+++ .+|.++..|.+++..
T Consensus 13 ~~~~I~W~~~~-----~~~~~~~I~L~~g~~~~~~~~~~ia~~v~~~~gs~~~~~p~~l~~~~~Y~i~~~~ 78 (93)
T PF10342_consen 13 QPITITWTSDG-----TDPGNVTIYLCNGNNTNLNFVQTIASNVSNSDGSYTWTIPSDLPSGGDYFIQIVN 78 (93)
T ss_pred CcEEEEEeCCC-----CCCcEEEEEEEcCCCCCcceeEEEEecccCCCCEEEEEcCCCCCCCCcEEEEEEE
Confidence 67999999721 1225678877765531 22222212222225566666 558888889888873
No 482
>KOG1225|consensus
Probab=50.18 E-value=28 Score=35.24 Aligned_cols=107 Identities=18% Similarity=0.081 Sum_probs=67.6
Q ss_pred eEEEEeCCCcceeEEEEEEEEecCC-CCCCCCccEEEEccCCCCCCCCCceEEEeeecceEEEEeeeccccccccceeeE
Q psy12061 348 IAVVRIPSEFYYTEYEVKVQAINDV-GPGPESEVVTIFSAEDMPQVAPQGVFSRGFNSTAINVTWNPIELIRENIRGRLI 426 (626)
Q Consensus 348 ~~~~~~~~L~p~~~Y~~~v~a~n~~-g~~~~s~~~~~~t~~~~p~~~p~~~~~~~~~~~si~l~W~~~~~~~~~~~~~i~ 426 (626)
...+.+..|.|+..|..+++++-.. |..+..... .+... .+..+.+.....+++.+.|..|... ..
T Consensus 417 ~~~~~~~~~~~g~~~~~~~~~v~~~~~~~~~~~~~--~~~~~----~~g~~~v~~~~~~s~e~~g~~~s~~-------~~ 483 (525)
T KOG1225|consen 417 ANSVDIQGLEPGDEYNCSVNTVAANIGSLPKDKSE--TTVLC----WNGGLCVDGETESSLEVGGPCPSSG-------TC 483 (525)
T ss_pred eeeeeeeeecCCcceeeehhhhhhhhccCCccccc--ceEee----cCCceeeeeeeeccccccCCCCCcc-------cc
Confidence 3456678899999999999987443 332222221 22122 4567888889999999999988754 34
Q ss_pred EEEEEEEecCCCccceEEEEecCccceEEEeCCccCceEEEEE
Q psy12061 427 GHRIKYWKEDNPEETAVYYLSRTTRNWALIVGLQPDTKYYVKV 469 (626)
Q Consensus 427 ~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~v~V 469 (626)
++.+.+ .....+.. ...........+...+|.|++.|.+.+
T Consensus 484 ~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~~~l~~c~~~~~~~ 524 (525)
T KOG1225|consen 484 GWEVRC-GPCGNDGG-VNAEPPPECTSYDRTGLGPCTEYEVSV 524 (525)
T ss_pred ceEEEe-eecCcccc-cccCCCCCCCCCCccCcccccceeccc
Confidence 677777 22222111 111122244557889999999998865
No 483
>PF11344 DUF3146: Protein of unknown function (DUF3146); InterPro: IPR021492 This family of proteins with unknown function appear to be restricted to Cyanobacteria.
Probab=50.06 E-value=11 Score=25.84 Aligned_cols=15 Identities=33% Similarity=0.598 Sum_probs=13.4
Q ss_pred CCCCCceEEEEEEEE
Q psy12061 560 DLSPGKRYHMRVLAF 574 (626)
Q Consensus 560 ~L~p~~~Y~~~V~a~ 574 (626)
.|+||..|.|.|+|.
T Consensus 66 ~LEpGgdY~Ftirak 80 (80)
T PF11344_consen 66 QLEPGGDYSFTIRAK 80 (80)
T ss_pred eccCCCceEEEEecC
Confidence 689999999999984
No 484
>PHA03282 envelope glycoprotein E; Provisional
Probab=49.30 E-value=40 Score=32.95 Aligned_cols=43 Identities=21% Similarity=0.319 Sum_probs=31.2
Q ss_pred CeeEecCCeEEEeecCCCCCEeEEEEEEeCCCce--EEEEEEEEe
Q psy12061 135 PNINIDGGLLEITNASFADAGEYECVVKSTVGKI--STKTTVIVE 177 (626)
Q Consensus 135 ~~~~~~~~~l~i~~~~~~d~g~Y~C~a~n~~g~~--~~~~~l~v~ 177 (626)
.|+...+.+|.|.+++.+|+|.|+..+...-... ...+.|.|.
T Consensus 117 ~rvs~~n~tl~l~~a~~~DsG~Y~L~~~~~~~~~~~~~~v~l~V~ 161 (540)
T PHA03282 117 PRVAVVNGTLVLREARETDSGMYVLSVSRAPNSTAARAVVFLVVG 161 (540)
T ss_pred cceeEecceEEEeeccccCCceEEEEecCCCCchhheEEEEEEec
Confidence 6777778899999999999999999875433332 333455554
No 485
>PF13754 Big_3_4: Bacterial Ig-like domain (group 3)
Probab=49.17 E-value=71 Score=20.66 Aligned_cols=28 Identities=21% Similarity=0.290 Sum_probs=21.1
Q ss_pred eEEecCCCCCceEEEEEEEEecCCCCCCC
Q psy12061 555 DADIVDLSPGKRYHMRVLAFSNGGDGRMS 583 (626)
Q Consensus 555 ~~~l~~L~p~~~Y~~~V~a~~~~G~g~~s 583 (626)
++.+..+ ..-.|.|+|.|.+.+|.....
T Consensus 15 s~t~~~~-~dG~y~itv~a~D~AGN~s~~ 42 (54)
T PF13754_consen 15 SFTVPAL-ADGTYTITVTATDAAGNTSTS 42 (54)
T ss_pred EEeCCCC-CCccEEEEEEEEeCCCCCCCc
Confidence 3455555 466799999999999987655
No 486
>PF11141 DUF2914: Protein of unknown function (DUF2914); InterPro: IPR022606 This bacterial family of proteins has no known function.
Probab=48.61 E-value=85 Score=21.42 Aligned_cols=52 Identities=23% Similarity=0.380 Sum_probs=34.0
Q ss_pred eeEEEeCCEEcc------CCCcEEEccCCcEEEccCCCCCCEEEEEEEEcCCCCceeeEEEEE
Q psy12061 21 KFVWKKDGNIIG------SGGRRKIFENGNLLISPVSRDDSGIYSCTATNVHGMDESKGRLIV 77 (626)
Q Consensus 21 ~i~W~~~~~~i~------~~~~~~~~~~g~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~v 77 (626)
...|+++++.+. .++|++.. .-..+.+.+.|..+..+....|.........|
T Consensus 8 ~H~W~~~g~~~~~i~l~i~g~r~Rt~-----S~k~~~~~~~G~WrV~V~~~~G~~l~~~~F~V 65 (66)
T PF11141_consen 8 YHRWYKNGKLVARIPLPISGGRWRTW-----SSKQNFPDQPGDWRVEVVDEDGQVLGSLRFSV 65 (66)
T ss_pred EEEEEECCEEEEEEEEeccCCCEEEE-----EEeecCCCCCcCEEEEEEcCCCCEEEEEEEEE
Confidence 678999999773 12332222 22223447999999999999888666655544
No 487
>PHA03281 envelope glycoprotein E; Provisional
Probab=47.94 E-value=1.3e+02 Score=30.27 Aligned_cols=38 Identities=13% Similarity=0.142 Sum_probs=29.5
Q ss_pred CCcEEEccCCCCCCEEEEEEEEcCCCCcee-eEEEEEEe
Q psy12061 42 NGNLLISPVSRDDSGIYSCTATNVHGMDES-KGRLIVLH 79 (626)
Q Consensus 42 ~g~L~i~~v~~~d~G~Y~C~a~n~~g~~~~-~~~l~v~~ 79 (626)
.+.|.|.+.+..++|.|.-...+..|.... .+.|.|..
T Consensus 297 ~~vL~I~nAT~~naGVYtly~rg~~G~s~~svfLVtVkg 335 (642)
T PHA03281 297 PGVLKFEHMEAHHAGVYIWNLQGSDGENMYATFLVKLKG 335 (642)
T ss_pred CCeeEEEecccccceeEEEEecCCCCcceeEEEEEEecC
Confidence 356999999999999999999877675443 55666654
No 488
>PF11141 DUF2914: Protein of unknown function (DUF2914); InterPro: IPR022606 This bacterial family of proteins has no known function.
Probab=44.22 E-value=1e+02 Score=21.05 Aligned_cols=60 Identities=15% Similarity=0.150 Sum_probs=37.5
Q ss_pred ceeEEEeeCCEEeccccCCccCCCeeEecCCeEEEeecCCCCCEeEEEEEEeCCCceEEEEEEEE
Q psy12061 112 DVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEITNASFADAGEYECVVKSTVGKISTKTTVIV 176 (626)
Q Consensus 112 ~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~a~n~~g~~~~~~~l~v 176 (626)
.+...|+++++.+..-.+.-. ..+.. ...-..+.....|..++.+....|..-....+.|
T Consensus 6 ~v~H~W~~~g~~~~~i~l~i~-g~r~R----t~S~k~~~~~~~G~WrV~V~~~~G~~l~~~~F~V 65 (66)
T PF11141_consen 6 TVYHRWYKNGKLVARIPLPIS-GGRWR----TWSSKQNFPDQPGDWRVEVVDEDGQVLGSLRFSV 65 (66)
T ss_pred EEEEEEEECCEEEEEEEEecc-CCCEE----EEEEeecCCCCCcCEEEEEEcCCCCEEEEEEEEE
Confidence 366789999999864321111 11111 2222334447899999999999998777666654
No 489
>KOG1378|consensus
Probab=44.10 E-value=1.7e+02 Score=29.05 Aligned_cols=36 Identities=28% Similarity=0.358 Sum_probs=25.5
Q ss_pred ccceEEecCCCCCceEEEEEEEEecCCCCCCCCCcEEEeecc
Q psy12061 552 NTLDADIVDLSPGKRYHMRVLAFSNGGDGRMSSPAITFQMGE 593 (626)
Q Consensus 552 ~~~~~~l~~L~p~~~Y~~~V~a~~~~G~g~~s~~~~~~~~~~ 593 (626)
-.....+.+|++++.|.++|-. ...+| +...|.+.+
T Consensus 107 ~ih~~~~~~L~~~t~YyY~~Gs-----~~~wS-~~f~F~t~p 142 (452)
T KOG1378|consen 107 YIHDAVMKNLEPNTRYYYQVGS-----DLKWS-EIFSFKTPP 142 (452)
T ss_pred eEeeeeecCCCCCceEEEEeCC-----CCCcc-cceEeECCC
Confidence 3456778999999999999832 12255 566777765
No 490
>KOG3834|consensus
Probab=37.91 E-value=68 Score=31.13 Aligned_cols=70 Identities=21% Similarity=0.282 Sum_probs=46.9
Q ss_pred eEEEeeecceEEEEeeeccccccccceeeEEEEEEEEecCCCccceEEEEecCccceEEEeCCccCceEEEEE
Q psy12061 397 VFSRGFNSTAINVTWNPIELIRENIRGRLIGHRIKYWKEDNPEETAVYYLSRTTRNWALIVGLQPDTKYYVKV 469 (626)
Q Consensus 397 ~~~~~~~~~si~l~W~~~~~~~~~~~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~v~V 469 (626)
+++.+.....+.+.|-.+. .+..|.+.||.|+++...................-..+-+|.+++.|.+-+
T Consensus 68 ltv~n~kt~~~R~v~I~ps---~~wggqllGvsvrFcsf~~A~~~vwHvl~V~p~SPaalAgl~~~~DYivG~ 137 (462)
T KOG3834|consen 68 LTVYNSKTQEVRIVEIVPS---NNWGGQLLGVSVRFCSFDGAVESVWHVLSVEPNSPAALAGLRPYTDYIVGI 137 (462)
T ss_pred EEEEecccceeEEEEeccc---ccccccccceEEEeccCccchhheeeeeecCCCCHHHhcccccccceEecc
Confidence 3333444446677777665 334577899999998776665544444444444457788999999999876
No 491
>PF02480 Herpes_gE: Alphaherpesvirus glycoprotein E; InterPro: IPR003404 Glycoprotein E (gE) of Alphaherpesvirus forms a complex with glycoprotein I (gI), functioning as an immunoglobulin G (IgG) Fc binding protein. gE is involved in virus spread but is not essential for propagation [].; GO: 0016020 membrane; PDB: 2GJ7_F 2GIY_B.
Probab=37.52 E-value=69 Score=32.02 Aligned_cols=69 Identities=19% Similarity=0.203 Sum_probs=36.2
Q ss_pred CCceEEEEeeeCCCCCCeeEEEeCCEEccCCCcEEEccCC-cEEEccCCCCCCEEEEEEEEcCCCCceeeEEEEE
Q psy12061 4 EGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENG-NLLISPVSRDDSGIYSCTATNVHGMDESKGRLIV 77 (626)
Q Consensus 4 ~G~~~~l~C~~~g~p~p~i~W~~~~~~i~~~~~~~~~~~g-~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~v 77 (626)
.|......|...+.|.-= .....+......+...++ .|+|.++..+++|.|-|++.-. |...+.....+
T Consensus 233 ~~~~~y~~C~~~~~~~~C----~~~~~~~~~~~~~~~~~~~~l~f~~a~~~~sGLYv~V~~~n-ghv~aW~yt~v 302 (439)
T PF02480_consen 233 LASRRYANCSPSGWPRRC----PSTSHIEPVPGLRWASNGVDLQFTNAPESASGLYVFVVYYN-GHVEAWTYTLV 302 (439)
T ss_dssp SEEEEEEEEBTTC-TTTT----EEEEEE---TTEEE-TTSSSEEESS--GGG-EEEEEEEEET-TEEEEEEEEEE
T ss_pred HHHHhhcCCCCCCCcCCC----CchhccCcCccccccCCCcceEecCCCcccCceEEEEEEEC-CeeeeeEEEEE
Confidence 456777888886632210 011112222333443444 5999999999999999999733 55555544444
No 492
>PHA03240 envelope glycoprotein M; Provisional
Probab=37.15 E-value=61 Score=27.83 Aligned_cols=30 Identities=27% Similarity=0.304 Sum_probs=22.1
Q ss_pred ecCCeEEEeecCCCCCEeEEEEEEeCCCce
Q psy12061 139 IDGGLLEITNASFADAGEYECVVKSTVGKI 168 (626)
Q Consensus 139 ~~~~~l~i~~~~~~d~g~Y~C~a~n~~g~~ 168 (626)
-.+++|.|.++..+|.|+|.-.-....|..
T Consensus 102 C~NstL~i~~vn~sd~~nYcr~k~~~~g~~ 131 (258)
T PHA03240 102 CHNSTLIIAHLNLSDAGEYCRKKCPPKGDC 131 (258)
T ss_pred eccceEEEEEEeecCcchhhhccCCCCCCc
Confidence 367899999999999999865544445543
No 493
>PF09423 PhoD: PhoD-like phosphatase; InterPro: IPR018946 This entry contains a number of putative proteins as well as Alkaline phosphatase D which catalyses the reaction: A phosphate monoester + H(2)O = an alcohol + phosphate ; PDB: 2YEQ_B.
Probab=36.82 E-value=60 Score=32.89 Aligned_cols=48 Identities=27% Similarity=0.331 Sum_probs=20.9
Q ss_pred eEEEeCCccCceEEEEEEEeeCCCCCCCCccEEEeecCCCCCCCCceEEEeeeC
Q psy12061 453 WALIVGLQPDTKYYVKVMAYNNAGEGPESERYLERTYRKAPQKPPSAVHIKGIN 506 (626)
Q Consensus 453 ~~~i~~L~p~t~Y~v~V~a~~~~g~s~~s~~~~~~t~~~~p~~~p~~l~~~~~~ 506 (626)
.+.+++|+|++.|.+++.+... +..+..-.++|. |...+..+++...+
T Consensus 65 ~v~v~gL~p~t~Y~Y~~~~~~~---~~~s~~g~~rT~---p~~~~~~~r~a~~S 112 (453)
T PF09423_consen 65 KVDVTGLQPGTRYYYRFVVDGG---GQTSPVGRFRTA---PDGDPDPFRFAFGS 112 (453)
T ss_dssp EEEE-S--TT-EEEEEEEE--T---TEE---EEEE-----TT-----EEEEEE-
T ss_pred ecccCCCCCCceEEEEEEEecC---CCCCCceEEEcC---CCCCCCceEEEEEC
Confidence 4779999999999999998322 233445567777 33333345544333
No 494
>COG5475 Uncharacterized small protein [Function unknown]
Probab=36.79 E-value=1e+02 Score=19.94 Aligned_cols=33 Identities=24% Similarity=0.467 Sum_probs=22.6
Q ss_pred EEccCC-cEEEccCCCCCCEEEEEEEEcCCCCceee
Q psy12061 38 KIFENG-NLLISPVSRDDSGIYSCTATNVHGMDESK 72 (626)
Q Consensus 38 ~~~~~g-~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~ 72 (626)
++..+| .++|...+.+ |.|.|.=-+..|...+.
T Consensus 12 ~lKsGGP~Mtvs~~ss~--Gmy~C~Wf~g~g~~~~~ 45 (60)
T COG5475 12 TLKSGGPRMTVSGYSSD--GMYECRWFDGYGVKREA 45 (60)
T ss_pred EeecCCceEEEeccccC--CeEEEEEecCCCccccc
Confidence 333334 5667666654 99999999998865544
No 495
>PRK14081 triple tyrosine motif-containing protein; Provisional
Probab=36.75 E-value=5.5e+02 Score=27.40 Aligned_cols=325 Identities=14% Similarity=0.017 Sum_probs=0.0
Q ss_pred CceEEEEeeeCCCCCCeeEEEeCCEEccCCCcEEEccCCcEEEccCCCCCCEEEEEEEEcCCCC------ceeeEEEEEE
Q psy12061 5 GGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTATNVHGM------DESKGRLIVL 78 (626)
Q Consensus 5 G~~~~l~C~~~g~p~p~i~W~~~~~~i~~~~~~~~~~~g~L~i~~v~~~d~G~Y~C~a~n~~g~------~~~~~~l~v~ 78 (626)
|+.+.|.+.+.|.-.-.+.+.-+|..+ ....=++-.--+-.++.+|.|.-.+.-.+.. +.......+.
T Consensus 305 g~~I~ika~a~GG~~llYrf~I~G~~~------e~~~Y~~~n~~~w~P~~~G~Y~I~v~VKDk~S~~eyD~~~~v~f~i~ 378 (667)
T PRK14081 305 DTDIELKAVAEGGKELLYRFIIKGKES------EDSGYIRNNIYTWKPKIAGKYSITLWVKDISSKGEYEDKSSIDYTIE 378 (667)
T ss_pred CceEEEEEEecCCCceEEEEEECCcEE------eeccccccceEEEeeCCCceEEEEEEEEcCcCcccccceEEEEEEEc
Q ss_pred eCCceee-----eCCCceEEecCCcEEEEEEecccCCcceeEEEeeCCEEeccccCCccCCCeeEecCCeEEEeecCCCC
Q psy12061 79 HGPSYYE-----QLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEITNASFAD 153 (626)
Q Consensus 79 ~~p~~~~-----~~~~~~~v~~g~~~~l~C~~~~~p~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d 153 (626)
..+.... ..+.......|+++.+.|.+.+.-....++.=.+||..+... .-+.-.--+..+..
T Consensus 379 ~~~~~p~~I~~vl~d~~~~~lvG~~i~i~v~a~gg~~~lY~f~ik~ng~~ve~~------------~Y~~~~~~~f~P~~ 446 (667)
T PRK14081 379 EKSKEPIKIEDVILDKGKHILKGEEIKIRVIAEGGTNLRYSFIIKKDGKEEEKI------------DYGKNNWVNFIPEE 446 (667)
T ss_pred ccCCCCeEEEEEEECCCCceEeCCeEEEEEEecCCCeEEEEEEEEECCEEEEEe------------ecccccEEEEEECC
Q ss_pred CEeEEEEE------EeCCCceEEEEEEEEeCCCCCCCceEEEE-----EeccceEEEEecCCCCCCcccEEEEEEeecCC
Q psy12061 154 AGEYECVV------KSTVGKISTKTTVIVEGPPGLPGGVQVVE-----VHKTSATIQWTDGATNGRPITHYKIIARTNWN 222 (626)
Q Consensus 154 ~g~Y~C~a------~n~~g~~~~~~~l~v~~~P~~p~~~~~~~-----~~~~~~~l~W~~~~~~~~~~~~y~v~~~~~~~ 222 (626)
+|.|+..+ +...=.....+.+.|...+..-.+-.+.. .-...+++.-... ++......|.+.-....
T Consensus 447 ~G~Y~IeV~vKdk~S~~~yD~~k~v~l~V~e~~P~~i~~il~~~~~~~~vg~~i~~~~~~~-~~k~v~y~y~~~~NG~~- 524 (667)
T PRK14081 447 KGNYELEVRVKDKYSDKEYDAHTIVYIKVHEYIPAEIDYILLPVKEYYLVGDDIEIEVIIQ-NTKDVLIKYILKINGHK- 524 (667)
T ss_pred CeeEEEEEEEecccCchhcccceEEEEEEeccCceeeeeEEecccccEEeCCEEEEEEEEe-CCCeEEEEEEEEECCEE-
Q ss_pred CCceEeecceeeeeeeccCCceeEEEEeeccCCceEEEEEEEecCCccCCCCCCCCcccCCCCCCCCCCceeEeecCCcC
Q psy12061 223 STWFNVSEHVIGKEVDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPSPQYNTPADKPYQAPSRIGGGGGKIG 302 (626)
Q Consensus 223 ~~w~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~y~~~v~a~n~~g~~~~s~~~~~~~~~~~~p~~~p~~~~~~~~~~~ 302 (626)
.....|.....+.+. ......|.+-|.|.|.............-.....+.|..-..+........
T Consensus 525 ------------v~~t~Ys~~~~ysf~--P~~~GkY~I~V~aKn~~s~~~~D~~k~v~~~V~e~~pi~nt~~~~~~~~~~ 590 (667)
T PRK14081 525 ------------VEETDYIKNKKYKFI--PKCSGKYTIEVLAKNIKSTEEYDSKKEVKFYVREALPITNTKIKTSKKKFK 590 (667)
T ss_pred ------------EEEeeccccceEEEe--ecCCceEEEEEEEcccccccccccceEEEEEEcCCCCceeeEEEeecceEE
Q ss_pred -eEEEEEeeCCCCCcccCcceEEEEEEecCCCcceeeeeeeecceeeEEEEeCCCcceeEEEEEEEEecCCC
Q psy12061 303 -DLSISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETLKEYGNVGIAVVRIPSEFYYTEYEVKVQAINDVG 373 (626)
Q Consensus 303 -~v~l~W~~~~~~~~~~~~~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~p~~~Y~~~v~a~n~~g 373 (626)
.-.++|.. ...++..+ -|+.+....+ .....+.=.....+++.....| .|.+.|.+....+
T Consensus 591 ~n~~~t~~~--~~~gg~~v-~Yef~v~~~g------~w~~vq~ys~k~~ysf~p~~~g-~Y~ilvl~ks~~~ 652 (667)
T PRK14081 591 CNEEVTFSV--KSEGGKDV-CYEFYIMEKG------EWKLVQKYSRKNYYSFMPFNKG-KYKVLVLCKSYYK 652 (667)
T ss_pred cCCeEEEEE--EccCCCcE-EEEEEEEECC------cEEEEeeccccCceEEEeccCC-cEEEEEEEecccc
No 496
>PF08329 ChitinaseA_N: Chitinase A, N-terminal domain; InterPro: IPR013540 This domain is found in a number of bacterial chitinases and similar viral proteins. It is organised into a fibronectin III module domain-like fold, comprising only beta strands. Its function is not known, but it may be involved in interaction with the enzyme substrate, chitin [, ]. It is separated by a hinge region from the catalytic domain (IPR001223 from INTERPRO); this hinge region is probably mobile, allowing the N-terminal domain to have different relative positions in solution []. ; GO: 0004568 chitinase activity; PDB: 2WLY_A 1EDQ_A 2WM0_A 1X6N_A 1NH6_A 2WK2_A 1EHN_A 2WLZ_A 1EIB_A 1FFR_A ....
Probab=36.61 E-value=2.2e+02 Score=22.81 Aligned_cols=65 Identities=15% Similarity=0.198 Sum_probs=33.0
Q ss_pred eecceEEEEeeeccccccccceeeEEEEEEEEecCCCccceEEEEecCccceEEEeCCccCceEEEEEEEeeCCCCCC
Q psy12061 402 FNSTAINVTWNPIELIRENIRGRLIGHRIKYWKEDNPEETAVYYLSRTTRNWALIVGLQPDTKYYVKVMAYNNAGEGP 479 (626)
Q Consensus 402 ~~~~si~l~W~~~~~~~~~~~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~v~V~a~~~~g~s~ 479 (626)
...-.|.|+|..=.... -..|.|+. . ......-........ .-....+..|.++|..+|..|++.
T Consensus 35 ~~~v~V~VtwN~WsG~~------Gd~~kly~--d----G~~V~tG~~~~~~~a-~~~~~~gG~y~~~VeLCN~~GCS~ 99 (133)
T PF08329_consen 35 NDQVDVSVTWNVWSGTN------GDTAKLYF--D----GVLVWTGPSPQQKSA-TFTVTKGGRYQMQVELCNADGCST 99 (133)
T ss_dssp -SSEEEEEEEE-SSS---------SEEEEEE--T----TEEEEEEE--SEEEE-EEEE-S-EEEEEEEEEEETTEEEE
T ss_pred cCceEEEEEEEEecCCC------CCEEEEEE--C----CEEEEeCCCccCceE-EEEecCCCEEEEEEEEECCCCccc
Confidence 45567889998644221 23677764 1 111111111112223 334467789999999999999754
No 497
>PHA03112 IL-18 binding protein; Provisional
Probab=36.02 E-value=2.3e+02 Score=22.92 Aligned_cols=28 Identities=11% Similarity=0.100 Sum_probs=20.1
Q ss_pred ecCCcEEEEEEecccCCcceeEEEeeCC
Q psy12061 94 AAHRNLQLRCSAHTEELLDVAYIWTHNG 121 (626)
Q Consensus 94 ~~g~~~~l~C~~~~~p~p~~~i~W~~~~ 121 (626)
..++++.|+|.+-+.-+..--+.|.+++
T Consensus 36 k~~~~vvL~C~gcs~fp~fS~lYWl~gn 63 (141)
T PHA03112 36 KETEKVVLECRGCSYFPKFSYVYWLIGN 63 (141)
T ss_pred CCCCEEEEEEECccCCCCceEEEEEcCC
Confidence 4599999999998653333357899654
No 498
>PF01688 Herpes_gI: Alphaherpesvirus glycoprotein I; InterPro: IPR002874 This family consists of glycoprotein I from various members of the alphaherpesvirinae. These include Human herpesvirus 1 (HHV-1), Human herpesvirus 3 (HHV-3) and Suid herpesvirus 1 (Pseudorabies virus). Glycoprotein I (gI) is important during natural infection, mutants lacking gI produce smaller lesions at the site of infection and show reduced neuronal spread []. gI forms a heterodimeric complex with gE; this complex displays Fc receptor activity (binds to the Fc region of immunoglobulin) []. Glycoproteins are also important in the production of virus-neutralizing antibodies and cell mediated immunity []. The alphaherpesviridae have a dsDNA genome and have no RNA stage during viral replication.; GO: 0033643 host cell part
Probab=35.88 E-value=89 Score=25.94 Aligned_cols=33 Identities=30% Similarity=0.186 Sum_probs=25.6
Q ss_pred EEEccCCCCCCEEEEEEEEcCCCCceeeEEEEE
Q psy12061 45 LLISPVSRDDSGIYSCTATNVHGMDESKGRLIV 77 (626)
Q Consensus 45 L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~v 77 (626)
|.|++-+.+|+|.|.-.+.-...+....+.+.+
T Consensus 126 L~i~~p~~~dsG~Y~lRV~l~~~~~~d~F~~~v 158 (161)
T PF01688_consen 126 LRIRNPRPEDSGIYYLRVWLDGANKADVFRLSV 158 (161)
T ss_pred EEeCCCCcccceEEEEEEEECCCCCCcEEEEee
Confidence 999999999999999999876555444444433
No 499
>PHA03283 envelope glycoprotein E; Provisional
Probab=35.67 E-value=1.1e+02 Score=30.79 Aligned_cols=39 Identities=26% Similarity=0.157 Sum_probs=32.2
Q ss_pred cCCeEEEeecCCCCCEeEEEEEEeCCCceEEEEEEEEeC
Q psy12061 140 DGGLLEITNASFADAGEYECVVKSTVGKISTKTTVIVEG 178 (626)
Q Consensus 140 ~~~~l~i~~~~~~d~g~Y~C~a~n~~g~~~~~~~l~v~~ 178 (626)
..+.|+|.+++.+++|.|+--..+..+.......|.|..
T Consensus 132 ~~~~l~I~~at~~~aGVYtly~r~d~~~~~~vflvtVk~ 170 (542)
T PHA03283 132 ERSVLQIQRATPNIAGVYTLHVSSDGMMKHSVFFVTVKK 170 (542)
T ss_pred CCCeeEEEecccccCeEEEEEecCCCceEEEEEEEEecC
Confidence 457899999999999999999998777555666677766
No 500
>PHA02579 7 baseplate wedge subunit; Provisional
Probab=34.02 E-value=2.1e+02 Score=30.36 Aligned_cols=74 Identities=18% Similarity=0.146 Sum_probs=44.7
Q ss_pred CCceEEEeeeCCCEEEEEEeecCCCCCCCceeeEEEEEEEeccCCc------ccccee-eecCccceEEecCCCCCceEE
Q psy12061 496 PPSAVHIKGINPTTVHVTWRYVSPSFEEEPIIGYKVRVWEVDQDMS------RANDTI-IPVGNTLDADIVDLSPGKRYH 568 (626)
Q Consensus 496 ~p~~l~~~~~~~~~~~l~W~~~~~~~~~~~i~~Y~i~~~~~~~~~~------~~~~~~-~~~~~~~~~~l~~L~p~~~Y~ 568 (626)
+...|++..++.+.+.|+|+. . |.--.|.|++........ ...+.. -...+...|.- .|.|.+.|.
T Consensus 7 ~vtslrI~kLsaN~v~l~Wdd--V----G~NFyY~Ve~a~t~~~~g~~ip~~~~~w~nlg~T~~~~wFed-~~~p~t~Yk 79 (1030)
T PHA02579 7 SVTSLRIDKLSANQVYLTWDD--V----GANFYYFVELAETRDADGELIPDDELRWINLGYTANNEWFED-KLQPNTYYK 79 (1030)
T ss_pred cccEEEhhhhccceEEEEeec--c----CCceEEEEEEEeeccCCCccCCCccccceecCcccchhhhhh-ccCCcceEE
Confidence 356788888899999999993 2 333468888765443211 111111 11122233333 499999999
Q ss_pred EEEEEEec
Q psy12061 569 MRVLAFSN 576 (626)
Q Consensus 569 ~~V~a~~~ 576 (626)
+||+..-.
T Consensus 80 ~Rv~~~~q 87 (1030)
T PHA02579 80 FRVAVAAQ 87 (1030)
T ss_pred EEEEeecc
Confidence 99976543
Done!