RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy12061
(626 letters)
>2v5y_A Receptor-type tyrosine-protein phosphatase MU; membrane, hydrolase,
glycoprotein, receptor protei tyrosine phosphatase, cell
adhesion; HET: NAG; 3.10A {Homo sapiens}
Length = 731
Score = 328 bits (842), Expect = e-103
Identities = 113/662 (17%), Positives = 190/662 (28%), Gaps = 79/662 (11%)
Query: 1 YAGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSC 60
G + ++ P +W G+ + R L IS + +
Sbjct: 87 SNSPPGLLNVYVKVNNGPLGNPIWNISGDPTRTWNR------AELAISTFWPNFYQVIFE 140
Query: 61 TATNVHGMDESKGRLIVLHGPSYYEQL---PPKITIAAHRNLQLRCSAHTEELLDVAYIW 117
T+ H + + VL P + + A + +CSA +
Sbjct: 141 VITSGHQGYLAIDEVKVLGHPCTRTPHFLRIQNVEVNAGQFATFQCSAIGRTVAGD--RL 198
Query: 118 THNGVRIGNMDLNELETPNINIDGGLLEITNASFADAGEYECVVKSTVGK-ISTKTTVIV 176
G+ + + L E++ + + N + DAG+Y C++++ G IS ++V
Sbjct: 199 WLQGIDVRDAPLKEIKVTSSRRFIASFNVVNTTKRDAGKYRCMIRTEGGVGISNYAELVV 258
Query: 177 EGPPGLPGGVQVVEVHKTSATIQWTDGATNG-RPITHYKIIARTNWNSTWFNVSEHVIGK 235
+ PP Q+ V T IQ + NG PI ++ T + +W
Sbjct: 259 KEPPVPIAPPQLASVGATYLWIQLNANSINGDGPIVAREVEYCTA-SGSW---------- 307
Query: 236 EVDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGE-PSSPSPQYNTPADKPYQAPSRI 294
DR + L P + YE V+ G P+ + T P + P ++
Sbjct: 308 -NDRQPVDSTSYKIGHLDPDTEYEISVLLTRPGEGGTGSPGPALRTRTKCADPMRGPRKL 366
Query: 295 GGGGGKIGDLSISWEPLPREKQNAPNIYYKIFWRKK-NDTEFQSETLKEYGNVGIAVVRI 353
K ++I WEP + + + + E E + I
Sbjct: 367 EVVEVKSRQITIRWEPFGYNVTRCHSYNLTVHYCYQVGGQEQVREEVSWDTENSHPQHTI 426
Query: 354 PSEFYYTEYEVKVQAINDVGPGPESEVVTIFSAEDMPQVAPQGVFSRGFNSTAINVTWNP 413
+ YT VK+ +N G S+ + + + ED+P P I + W
Sbjct: 427 TNLSPYTNVSVKLILMNPEGRKE-SQELIVQTDEDLPGAVPTESIQGSTFEEKIFLQWRE 485
Query: 414 IELIRENIRGRLIGHRIKYWKEDNPEETAVYYLSR------TTRNWALIVGLQPDTKYYV 467
G + + I Y + + L GL P T Y
Sbjct: 486 PT----QTYGVITLYEITYKAVSSFDPEIDLSNQSGRVSKLGNETHFLFFGLYPGTTYSF 541
Query: 468 KVMAYNNAGEGPESERYLERTYRKAPQKPPSAVHIKGINPTTVHVTWRYVSPSFEEEPII 527
+ A G GP + T AP P + +N T VT P+
Sbjct: 542 TIRASTAKGFGPPATNQF-TTKISAPSMPAYELETP-LNQTDNTVTVMLKPAHSRGAPVS 599
Query: 528 GYKVRVWEVDQDMSRANDTI---IPVGNTLDAD--------------------------- 557
Y++ V E ++ I PV
Sbjct: 600 VYQIVVEEERPRRTKKTTEILKCYPVPIHFQNASLLNSQYYFAAEFPADSLQAAQPFTIG 659
Query: 558 ---------IVDLSPGKRYHMRVLAFSNGGDGRMSSPAITFQMGEEKEFKSGSPALYSAS 608
L P K Y + A S G P +
Sbjct: 660 DNKTYNGYWNTPLLPYKSYRIYFQAASRANGETKIDCVQVATKGAATPKPVPEPEKQTDH 719
Query: 609 TT 610
T
Sbjct: 720 TV 721
Score = 158 bits (399), Expect = 5e-41
Identities = 82/579 (14%), Positives = 154/579 (26%), Gaps = 95/579 (16%)
Query: 4 EGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFEN------GNLLISPVSRDDSGI 57
G T C+ G + ++I + + ++ D+G
Sbjct: 178 AGQFATFQCSAIGRTVAGDRLWLQGIDVRDAPLKEIKVTSSRRFIASFNVVNTTKRDAGK 237
Query: 58 YSCTATNVHGMDESKGRLIVLHGPSYYEQLPPKITIAAHR--NLQLRCSAHTEELLDVAY 115
Y C G+ S +V+ P PP++ +QL ++ + VA
Sbjct: 238 YRCMIRTEGGVGISNYAELVVKEPPV-PIAPPQLASVGATYLWIQLNANSINGDGPIVAR 296
Query: 116 IWTHNGVRIGNMDLNELETPNINIDGGLLEITNASFADAGEYECVVKSTVGKI------- 168
+ D +++ + I L T V+ + G+
Sbjct: 297 EVEYCTASGSWNDRQPVDSTSYKIGH-LDPDTEYEI-------SVLLTRPGEGGTGSPGP 348
Query: 169 STKTTVIVEGPPGLPGGVQVVEVHKTSATIQWT---DGATNGRPITHYKIIARTNWNSTW 225
+ +T P P ++VVEV TI+W T + +
Sbjct: 349 ALRTRTKCADPMRGPRKLEVVEVKSRQITIRWEPFGYNVTRC-HSYNLTVHYCYQVGGQE 407
Query: 226 FNVSEHVIGKEVDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPSPQYNTPAD 285
E E + +I N L P++ K+I N G S T D
Sbjct: 408 QVREEVSWDTENSHP----QHTITN-LSPYTNVSVKLILMNPEGRK-ESQELIVQ-TDED 460
Query: 286 KPYQAPSRIGGGGGKIGDLSISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETLKEYGN 345
P P+ G + + W + Y+I ++ + + + + + G
Sbjct: 461 LPGAVPTESIQGSTFEEKIFLQWREPT--QTYGVITLYEITYKAVSSFDPEIDLSNQSGR 518
Query: 346 VGIAVVRIPSEFY-------YTEYEVKVQAINDVGPGPESEVVTIFSAEDMPQVAPQGVF 398
V + T Y ++A G GP + + P + +
Sbjct: 519 V---SKLGNETHFLFFGLYPGTTYSFTIRASTAKGFGPPATN-QFTTKISAPSMPAYELE 574
Query: 399 SR-GFNSTAINVTWNPIELIRENIRGRLIGHRIKYWKEDNPEE----------------- 440
+ + V P + + ++I +E
Sbjct: 575 TPLNQTDNTVTVMLKPAH----SRGAPVSVYQIVVEEERPRRTKKTTEILKCYPVPIHFQ 630
Query: 441 -----------TAVYYLSRTTRNWALIVG------------LQPDTKYYVKVMAYNNAGE 477
A + +G L P Y + A + A
Sbjct: 631 NASLLNSQYYFAAEFPADSLQAAQPFTIGDNKTYNGYWNTPLLPYKSYRIYFQAASRANG 690
Query: 478 GPESERYLERTYRKAPQKPPSAVHIKGINPTTVHVTWRY 516
+ + T A KP + TV T +
Sbjct: 691 ETKIDCVQVATKGAATPKPVPE--PEKQTDHTVKGTKHH 727
>3l5h_A Interleukin-6 receptor subunit beta; IG-like, FNIII, cell membrane,
disulfide bond, glycoprotein, immunoglobulin domain,
membrane, phosphoprotein; HET: NAG NDG BMA FUC; 3.60A
{Homo sapiens}
Length = 589
Score = 295 bits (756), Expect = 4e-92
Identities = 91/612 (14%), Positives = 181/612 (29%), Gaps = 69/612 (11%)
Query: 5 GGNVTIFC-------NPEAAPKPKFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGI 57
N T C + VWK + I I + + +
Sbjct: 18 HSNFTAVCVLKEKCMDYFHVNANYIVWKTNHFTIPKEQYTIINRTASSVTFTDIASLNIQ 77
Query: 58 YSCTATNVHGMDESKGRLIVLHGPSYYEQLPP------KITIAAHRNLQLRCSAHTEELL 111
+C ++++ + ++ LPP + + ++ E L
Sbjct: 78 LTCNILTFGQLEQNVYGITII------SGLPPEKPKNLSCIVNEGKKMRCEWDGGRETHL 131
Query: 112 DVAYIWTHNGVRIGNMDLNELETPNIN--IDGGLLEITNASFADAGEYECVVKSTVGKIS 169
+ + D + +D + N E ++ +GK++
Sbjct: 132 ETNFTLKSEWATHKFADCKAKRDTPTSCTVDYSTVYFVN------IEVWVEAENALGKVT 185
Query: 170 TKTTVI---VEGPPGLPGGVQV--VEVHKTSATIQWTDGATNGRPITHYKIIARTNWNST 224
+ + P P + V E + + WT+ + I Y I RT ST
Sbjct: 186 SDHINFDPVYKVKPNPPHNLSVINSEELSSILKLTWTNPSIKSVIILKYNIQYRTKDAST 245
Query: 225 WFNVSEHVIGKEVDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPSPQYN--T 282
W + +T +++ L P++ Y F++ E G G S S + + T
Sbjct: 246 WSQIPPEDTASTRSSFT------VQD-LKPFTEYVFRIRCMKEDGKGYWSDWSEEASGIT 298
Query: 283 PADKPYQA----PSRIGGGGGKIGDLSISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSE 338
D+P +A + + W+ LP + N + Y++ + + Q+
Sbjct: 299 YEDRPSKAPSFWYKIDPSHTQGYRTVQLVWKTLPPFEANGKILDYEVTLT-RWKSHLQNY 357
Query: 339 TLKEYGNVGIAVVRIPSEFYYTEYEVKVQAINDVGPGPESEVVTIFSAEDMPQVAPQGVF 398
T+ V + Y + N VG + + A D P
Sbjct: 358 TVNAT----KLTVNLT----NDRYLATLTVRNLVGKSDAAVLTI--PACDFQATHPVMDL 407
Query: 399 SRGFNSTAINVTWNPIELIRENIRGRLIGHRIKYWKEDNPEETAVYYLSRTTRNWALIVG 458
+ V W RE+++ ++ + K + T L
Sbjct: 408 KAFPKDNMLWVEWTT---PRESVKKYILEWCVLSDKAPCITD--WQQEDGTVHRTYLRGN 462
Query: 459 LQPDTKYYVKVMAYNNAGEGPESERYLERTYRKAPQKPPSAVHIKGINPTTVHVTWRYVS 518
L Y + V G G + P K P+ V K + + W +
Sbjct: 463 LAESKCYLITVTPVYADGPGSPESIK-AYLKQAPPSKGPT-VRTKKVGKNEAVLEWDQLP 520
Query: 519 PSFEEEPIIGYKVRVWEVDQDMSRANDTIIPVGNTLDADIVDLSPGKRYHMRVLAFSNGG 578
+ I Y + + + + + + + L+ Y +R+ A+++ G
Sbjct: 521 VDVQNGFIRNYTIFYRTIIGN----ETAVNVDSSHTEYTLSSLTSDTLYMVRMAAYTDEG 576
Query: 579 DGRMSSPAITFQ 590
P TF
Sbjct: 577 GK--DGPEFTFT 586
Score = 97.0 bits (241), Expect = 3e-21
Identities = 38/295 (12%), Positives = 73/295 (24%), Gaps = 22/295 (7%)
Query: 305 SISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETLKEYGNVGIAVVRIPSEFYYTEYEV 364
+ + + NA I +K N E +V +
Sbjct: 26 VLKEKCMDYFHVNANYIVWK-----TNHFTIPKEQYTIINRTASSVTFTDIASLNIQLTC 80
Query: 365 KVQAINDVGPGPESEVVTIFSAEDMPQVAPQGVFSRGFNSTAINVTWNPIELIRENIRGR 424
+ + + +P P+ + + W+
Sbjct: 81 NILTFGQLEQNVYGITII----SGLPPEKPKNLSCIVNEGKKMRCEWDG-----GRETHL 131
Query: 425 LIGHRIKYWKEDNPEETAVYYLSRTTRNWALIVGLQPDTKYYVKVMAYNNAGEGPESERY 484
+K + T + + V V A N G+ S+
Sbjct: 132 ETNFTLKSEWATHKFADCKAK-RDTPTSCTVDYSTVYFVNIEVWVEAENALGKV-TSDHI 189
Query: 485 LERTYRKAPQKPPSAVHIKGIN--PTTVHVTWRYVSPSFEEEPIIGYKVRVWEVDQDMSR 542
K PP + + + + +TW +PS + I+ Y ++ D
Sbjct: 190 NFDPVYKVKPNPPHNLSVINSEELSSILKLTWT--NPSIKSVIILKYNIQYRTKDASTWS 247
Query: 543 ANDTIIPVGNTLDADIVDLSPGKRYHMRVLAFSNGGDGRMS--SPAITFQMGEEK 595
+ DL P Y R+ G G S S + E++
Sbjct: 248 QIPPEDTASTRSSFTVQDLKPFTEYVFRIRCMKEDGKGYWSDWSEEASGITYEDR 302
>2jll_A NCAM2, neural cell adhesion molecule 2; immunoglobulin domain,
immunoglobulin superfamily, transmembrane,
phosphoprotein, membrane, glycoprotein; HET: NAG; 2.30A
{Homo sapiens} PDB: 2xyc_A* 2jlk_A* 2doc_A
Length = 389
Score = 277 bits (711), Expect = 6e-88
Identities = 84/401 (20%), Positives = 154/401 (38%), Gaps = 36/401 (8%)
Query: 2 AGEGGNVTIFCNPEAAPKPKFVWKKDGNII-------GSGGRRKIFE---NGNLLISPVS 51
E G VT+ C+ E P P+ WK+ + GR ++ + +L I V
Sbjct: 12 TYENGQVTLVCDAEGEPIPEITWKRAVDGFTFTEGDKSLDGRIEVKGQHGSSSLHIKDVK 71
Query: 52 RDDSGIYSCTATNVHGMDESKGRLIVLHGPSYYEQLPPKITIAAHRNLQLRCSAHTEELL 111
DSG Y C A + G + L + + P + + + C +
Sbjct: 72 LSDSGRYDCEAASRIGGHQKSMYLDIEYAPKF-ISNQTIYYSWEGNPINISCDVKSNPPA 130
Query: 112 DVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEITNASFADAGEYECVVKSTVGKISTK 171
+ W + + + + L+T + +LEI S D G Y C + +G +
Sbjct: 131 SI--HWRRDKLVLPAKNTTNLKTYSTG-RKMILEIAPTSDNDFGRYNCTATNHIGTRFQE 187
Query: 172 TTVIVEGPPGLPGGVQVVEVHKTSATIQWTD-GATNGRPITHYKIIARTNWNSTWFNVSE 230
+ + P P GV+++E+ +T+A + + + G PI HY++ + + W V
Sbjct: 188 YILALADVPSSPYGVKIIELSQTTAKVSFNKPDSHGGVPIHHYQVDVKEVASEIWKIVRS 247
Query: 231 HVIGKEVDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPSPQYNTPADKPYQA 290
H + + N L P +TYE +V A N G G+ S P +P +
Sbjct: 248 HG---------VQTMVVLNN-LEPNTTYEIRVAAVNGKGQGDYSKIEIFQTLPVREP--S 295
Query: 291 PSRIGGGGGKIGDLSISWEPLPREKQNAPNIYYKIFWRKKN-DTEFQSETLKEYGNVGIA 349
P I G +S ++ AP + Y + +R K+ + ++ + ++
Sbjct: 296 PPSIHGQPSSGKSFKLSIT--KQDDGGAPILEYIVKYRSKDKEDQWLEKKVQ----GNKD 349
Query: 350 VVRIPSEFYYTEYEVKVQAINDVGPGPESEVVTIFSAEDMP 390
+ + + YEV++ A N +G + FS P
Sbjct: 350 HIILEHLQWTMGYEVQITAANRLGYSEPTV--YEFSMPPKP 388
Score = 131 bits (330), Expect = 2e-33
Identities = 63/436 (14%), Positives = 138/436 (31%), Gaps = 81/436 (18%)
Query: 88 PPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINI----DGGL 143
T + + L C A E + ++ W + ++ I +
Sbjct: 7 LKNETTYENGQVTLVCDAEGEPIPEI--TWKRAVDGFTFTEGDKSLDGRIEVKGQHGSSS 64
Query: 144 LEITNASFADAGEYECVVKSTVGKISTKTTVIVEGPPGLPGGVQVVEV------------ 191
L I + +D+G Y+C S +G + +E P +
Sbjct: 65 LHIKDVKLSDSGRYDCEAASRIGGHQKSMYLDIEYAPKFISNQTIYYSWEGNPINISCDV 124
Query: 192 -HKTSATIQWTDGATNGRPIT---HYKIIARTNWNSTWFNVSEHVIGKEVDRYTGRKEAS 247
A+I W + + + + I D GR
Sbjct: 125 KSNPPASIHWR---RDKLVLPAKNTTNLKTYSTGRKMIL-----EIAPTSDNDFGR---- 172
Query: 248 IENVLVPWSTYEFKVIAGNELGYGEPSSPSPQYNTPADKPYQAPSRIGGGGGKIGDLS-- 305
+ A N +G + AD P +P + KI +LS
Sbjct: 173 ------------YNCTATNHIG----TRFQEYILALADVP-SSPYGV-----KIIELSQT 210
Query: 306 ---ISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETLKEYGNVGIAVVR--IPSEFYYT 360
+S+ P P +Y++ ++ ++ ++ +G + V+ P T
Sbjct: 211 TAKVSFNK-PDSHGGVPIHHYQVDVKEVASEIWK--IVRSHGVQTMVVLNNLEP----NT 263
Query: 361 EYEVKVQAINDVGPGPESEVVTIFSAEDMPQVAPQGVFSRGFNSTAINVTWNPIELIREN 420
YE++V A+N G G S++ + +P + + + + ++ +++
Sbjct: 264 TYEIRVAAVNGKGQGDYSKIEIFQTLPVREP-SPPSIHGQPSSGKSFKLSITK----QDD 318
Query: 421 IRGRLIGHRIKYWKEDNPEETAVYYLSRTTRNWALIVGLQPDTKYYVKVMAYNNAGEGPE 480
++ + + ++ + E+ + + ++ ++ LQ Y V++ A N G
Sbjct: 319 GGAPILEYIV-KYRSKDKEDQWLEKKVQGNKDHIILEHLQWTMGYEVQITAANRLGYSEP 377
Query: 481 SERYLERTYRKAPQKP 496
+ P KP
Sbjct: 378 TV-----YEFSMPPKP 388
Score = 116 bits (291), Expect = 3e-28
Identities = 59/298 (19%), Positives = 101/298 (33%), Gaps = 48/298 (16%)
Query: 1 YAGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFE-----NGNLLISPVSRDDS 55
Y+ EG + I C+ ++ P W++D ++ + + L I+P S +D
Sbjct: 111 YSWEGNPINISCDVKSNPPASIHWRRDKLVLPAKNTTNLKTYSTGRKMILEIAPTSDNDF 170
Query: 56 GIYSCTATNVHGMDESKGRLIVLHGPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAY 115
G Y+CTATN G + L + PS P ++ ++ V+
Sbjct: 171 GRYNCTATNHIGTRFQEYILALADVPS-----SPY---------GVKIIELSQTTAKVS- 215
Query: 116 IWT----HNGVRIGN-------MDLNELETPNINIDGGLLEITNASFADAGEYECVVKST 164
+ H GV I + + + + ++ + N E +
Sbjct: 216 -FNKPDSHGGVPIHHYQVDVKEVASEIWKIVRSHGVQTMVVLNNLEPNTTYEIRVAAVNG 274
Query: 165 VG-----KISTKTTVIVEGPPGLPGGVQVVEVHKTSATIQWTDGATNGRPITHYKIIART 219
G KI T+ V P P + S + T G PI Y + R+
Sbjct: 275 KGQGDYSKIEIFQTLPVR-EPS-PPSIHGQPSSGKSFKLSITKQDDGGAPILEYIVKYRS 332
Query: 220 NWNSTWFNVSEHVIGKEVDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPS 277
+ E + D +E+ L YE ++ A N LGY EP+
Sbjct: 333 KDKEDQWL--EKKVQGNKDHII------LEH-LQWTMGYEVQITAANRLGYSEPTVYE 381
Score = 90.6 bits (225), Expect = 9e-20
Identities = 47/272 (17%), Positives = 99/272 (36%), Gaps = 26/272 (9%)
Query: 324 KIFWRKKNDTEFQSET---LKEYGNVGIAVVRIPS--EFYYTEYEVKVQAINDVGPGPES 378
I WR+ + ++ LK Y ++ I + + Y A N +G
Sbjct: 131 SIHWRR-DKLVLPAKNTTNLKTYSTGRKMILEIAPTSDNDFGRY--NCTATNHIG---TR 184
Query: 379 EVVTIFSAEDMPQVAPQGVFSRGFNSTAINVTWNPIELIRENIRGRLIGHRIKYWKEDNP 438
I + D+P +P GV + T V++N + + + +++ + +
Sbjct: 185 FQEYILALADVPS-SPYGVKIIELSQTTAKVSFNKPD---SHGGVPIHHYQVDVKEVASE 240
Query: 439 EETAVYYLSRTTRNWALIVGLQPDTKYYVKVMAYNNAGEGPESERYLERTYRKAPQKPPS 498
V T ++ L+P+T Y ++V A N G+G S+ ++ P + PS
Sbjct: 241 IWKIVRSHGVQTM--VVLNNLEPNTTYEIRVAAVNGKGQGDYSK---IEIFQTLPVREPS 295
Query: 499 A--VHIKGINPTTVHVTWRYVSPSFEEEPIIGYKVRVWEVDQDMSRANDTIIPVGNTLDA 556
+H + + + ++ PI+ Y V+ D++ + GN
Sbjct: 296 PPSIHGQPSSGKSFKLSIT--KQDDGGAPILEYIVKYRSKDKEDQWLEKKV--QGNKDHI 351
Query: 557 DIVDLSPGKRYHMRVLAFSNGGDGRMSSPAIT 588
+ L Y +++ A + G + +
Sbjct: 352 ILEHLQWTMGYEVQITAANRLGYSEPTVYEFS 383
Score = 54.4 bits (131), Expect = 5e-08
Identities = 25/101 (24%), Positives = 40/101 (39%), Gaps = 6/101 (5%)
Query: 496 PPSAVHIKGINPTTVHVTWRYVSPSFE-EEPIIGYKVRVWEVDQDMSRANDTIIPVGNTL 554
P V I ++ TT V++ P PI Y+V V EV ++ + + G
Sbjct: 198 SPYGVKIIELSQTTAKVSFN--KPDSHGGVPIHHYQVDVKEVASEIWKIVRS---HGVQT 252
Query: 555 DADIVDLSPGKRYHMRVLAFSNGGDGRMSSPAITFQMGEEK 595
+ +L P Y +RV A + G G S I + +
Sbjct: 253 MVVLNNLEPNTTYEIRVAAVNGKGQGDYSKIEIFQTLPVRE 293
>1zlg_A Anosmin 1; insulin-like growth factor receptor Cys-rich fold, WHEY
acidic protein fold, fibronectin type III fold, hormone-
growth factor complex; NMR {Homo sapiens}
Length = 680
Score = 224 bits (572), Expect = 7e-65
Identities = 77/502 (15%), Positives = 150/502 (29%), Gaps = 73/502 (14%)
Query: 153 DAGEYECVVKSTVGKISTKTTVIVEGPPGLPGGVQVVEVHKTSATIQWTDGATNGRPITH 212
+G +C T+ P ++ E+ ++W+
Sbjct: 134 CSGVKKCCSNGCGHTCQVPKTLYKGVPLKPRKELRFTELQSGQLEVKWSSKFNISIEPVI 193
Query: 213 YKIIARTNWNSTWFNVSEHVIGKEVDRYTG-RKEASIENVLVPWSTYEFKVIAGNELGYG 271
Y + R N+ SE + + + + P Y+F+V A N G
Sbjct: 194 YVVQRRWNYGIHP---SEDDATHWQTVAQTTDERVQLTD-IRPSRWYQFRVAAVNVHGTR 249
Query: 272 EPSSPSPQYNTPAD-KPYQAPSRIGGGGGKIG-----DLSISWEPLPREKQNAPNIYYKI 325
++PS + + D AP+ + + ++I W+ E+ + P +YK+
Sbjct: 250 GFTAPSKHFRSSKDPSAPPAPANLRLANSTVNSDGSVTVTIVWDLP--EEPDIPVHHYKV 307
Query: 326 FWRKK-NDTEFQSETLKEYGNVGIAV--VRIPSEFYYTEYEVKVQAINDVGPGP-ESEVV 381
FW + K V + +Y V++QAI G +S V
Sbjct: 308 FWSWMVSSKSLVPTKKKRRKTTDGFQNSVILEKLQPDCDYVVELQAITYWGQTRLKSAKV 367
Query: 382 TIFSAEDMPQVAPQGVFSRGFNSTAINVTWNPIELIRENIRGR----------------- 424
++ + + + + R G
Sbjct: 368 SLHFTSTHATNNKEQLVKTRKGGIQTQLPFQRRRPTRPLEVGAPFYQDGQLQVKVYWKKT 427
Query: 425 ----LIGHRIKYWKED---NPEETAVYYLSRTTRNWALIVGLQPDTKYYVKVMAYNNAGE 477
+ + ++++ E N + T N+ ++ L KY V V
Sbjct: 428 EDPTVNRYHVRWFPEACAHNRTTGSEASSGMTHENYIILQDLSFSCKYKVTVQPIRPKSH 487
Query: 478 GPESERYL----------------------ERTYRKAPQKP--PSAVHIKGINPTTVHVT 513
+ K KP SA I T H +
Sbjct: 488 SKAEAVFFTTPPCSALKGKSHKPIGCLGEAGHVLSKVLAKPENLSASFIVQDVNITGHFS 547
Query: 514 WRYVSPSFEEEPIIGYKVRVWEVDQ--DMSRANDTIIPVGNTLDAD-----IVDLSPGKR 566
W+ ++ + +P+ G++V EV + ++II L +D + +L P
Sbjct: 548 WK-MAKANLYQPMTGFQVTWAEVTTESRQNSLPNSIISQSQILPSDHYVLTVPNLRPSTL 606
Query: 567 YHMRVLAFSNGGDGRMSSPAIT 588
Y + V + GG+G +
Sbjct: 607 YRLEVQVLTPGGEGPATIKTFR 628
Score = 122 bits (307), Expect = 2e-29
Identities = 51/383 (13%), Positives = 101/383 (26%), Gaps = 65/383 (16%)
Query: 270 YGEPSSPSPQYNTPADKPYQAPSRIGGGGGKIGDLSISWEPLPREKQNAPNIYYKIFWRK 329
G + P + + + G L + W + + + Y + R
Sbjct: 143 NGCGHTCQVPKTLYKGVPLKPRKELRFTELQSGQLEVKWSS--KFNISIEPVIYVVQRRW 200
Query: 330 KNDTEFQSETLKEYGNVGIAVVRIPSEFY-------YTEYEVKVQAINDVGPGPESEVVT 382
+ + V + E Y+ +V A+N G +
Sbjct: 201 NYGIHPSEDDATHW----QTVAQTTDERVQLTDIRPSRWYQFRVAAVNVHGTRGFTAPSK 256
Query: 383 IFSAEDMPQVAPQGVFSRGFNSTA-------INVTWNPIELIRENIRGRLIGHRIKYWKE 435
F + P P R NST + + W+ E + + +W
Sbjct: 257 HFRSSKDPSAPPAPANLRLANSTVNSDGSVTVTIVWDLPEEPDIPVHHYKV-----FWSW 311
Query: 436 DNPEETAVYYLSRTTR------NWALIVGLQPDTKYYVKVMAYNNAGEGPESERYLERTY 489
++ V + + N ++ LQPD Y V++ A G+ + +
Sbjct: 312 MVSSKSLVPTKKKRRKTTDGFQNSVILEKLQPDCDYVVELQAITYWGQTRLKSAKVSLHF 371
Query: 490 RKAPQKPPSAVHIK----------------------------GINPTTVHVTWRYVSPSF 521
+K V V W
Sbjct: 372 TSTHATNNKEQLVKTRKGGIQTQLPFQRRRPTRPLEVGAPFYQDGQLQVKVYW----KKT 427
Query: 522 EEEPIIGYKVRVWEV--DQDMSRANDTIIPVGNTLDADIVDLSPGKRYHMRVLAFSNGGD 579
E+ + Y VR + + + ++ + + + DLS +Y + V
Sbjct: 428 EDPTVNRYHVRWFPEACAHNRTTGSEASSGMTHENYIILQDLSFSCKYKVTVQPIRPKSH 487
Query: 580 GRMSSPAITFQMGEEKEFKSGSP 602
+ + T + KS P
Sbjct: 488 SKAEAVFFTTPPCSALKGKSHKP 510
Score = 107 bits (268), Expect = 1e-24
Identities = 38/253 (15%), Positives = 79/253 (31%), Gaps = 14/253 (5%)
Query: 378 SEVVTIFSAEDMPQVAPQGVFSRGFNSTAINVTWNPIELIRENIRGRLIGHRIKYWKEDN 437
+ V + +P + + S + V W+ I ++ R Y +
Sbjct: 148 TCQVPKTLYKGVPLKPRKELRFTELQSGQLEVKWSSKFNISIEPVIYVVQRRWNYGIHPS 207
Query: 438 PEETAVYY-LSRTTRNWALIVGLQPDTKYYVKVMAYNNAGEGPESERYLERTYRKAPQKP 496
++ + +++TT + ++P Y +V A N G + K P P
Sbjct: 208 EDDATHWQTVAQTTDERVQLTDIRPSRWYQFRVAAVNVHGTRGFTAPSKHFRSSKDPSAP 267
Query: 497 PSAVHIKGIN-------PTTVHVTWRYVSPSFEEEPIIGYKVRVWEVDQDMSRANDTIIP 549
P+ +++ N TV + W P + P+ YKV + S
Sbjct: 268 PAPANLRLANSTVNSDGSVTVTIVWD--LPEEPDIPVHHYKVFWSWMVSSKSLVPTKKKR 325
Query: 550 V----GNTLDADIVDLSPGKRYHMRVLAFSNGGDGRMSSPAITFQMGEEKEFKSGSPALY 605
G + L P Y + + A + G R+ S ++ + +
Sbjct: 326 RKTTDGFQNSVILEKLQPDCDYVVELQAITYWGQTRLKSAKVSLHFTSTHATNNKEQLVK 385
Query: 606 SASTTLLLVMSST 618
+ + +
Sbjct: 386 TRKGGIQTQLPFQ 398
Score = 60.0 bits (144), Expect = 1e-09
Identities = 25/145 (17%), Positives = 51/145 (35%), Gaps = 6/145 (4%)
Query: 481 SERYLERTYRKAPQKPPSAVHIKGINPTTVHVTWRYVSPSFEEEPIIGYKVRV---WEVD 537
+ + + Y+ P KP + + + V W S + Y V+ + +
Sbjct: 148 TCQVPKTLYKGVPLKPRKELRFTELQSGQLEVKWS--SKFNISIEPVIYVVQRRWNYGIH 205
Query: 538 QDMSRAND-TIIPVGNTLDADIVDLSPGKRYHMRVLAFSNGGDGRMSSPAITFQMGEEKE 596
A + + D+ P + Y RV A + G ++P+ F+ ++
Sbjct: 206 PSEDDATHWQTVAQTTDERVQLTDIRPSRWYQFRVAAVNVHGTRGFTAPSKHFRSSKDPS 265
Query: 597 FKSGSPALYSASTTLLLVMSSTLYI 621
L A++T+ S T+ I
Sbjct: 266 APPAPANLRLANSTVNSDGSVTVTI 290
>2nzi_A Titin; IG-domain, FNIII-domain, transferase; 2.90A {Homo sapiens}
Length = 305
Score = 204 bits (520), Expect = 6e-61
Identities = 69/297 (23%), Positives = 107/297 (36%), Gaps = 27/297 (9%)
Query: 2 AGEGGNVTIFCNPEAAPKPKFVWKKDGN-IIGSGGRRKIFE----NGNLLISPVSRDDSG 56
N T+ C PKP W + G II G + +I E L+I+ V+ DD+
Sbjct: 16 VRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGGYHQLIIASVTDDDAT 75
Query: 57 IYSCTATNVHGMDESKGRLIV-----LHGPSYYEQLPPKITIAAHRNLQLRCSAHTEELL 111
+Y ATN G L V +H P E + + ++ +
Sbjct: 76 VYQVRATNQGGSVSGTASLEVEVPAKIHLPKTLEG-MGAVHALRGEVVSIKIPFSGKPDP 134
Query: 112 DVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEITNASFADAGEYECVVKSTVGKISTK 171
+ W I + + L+ DAG Y K+ G
Sbjct: 135 VI--TWQKGQDLI--DNNGHYQVIVTRSFTSLVFPNGVERKDAGFYVVCAKNRFGIDQKT 190
Query: 172 TTVIVEGPPGLPGGVQVVEVHKTSATIQWTD-GATNGRPITHYKIIARTNWNSTWFNVSE 230
+ V P P GV+V +V + S + WT+ + G IT+Y + W V +
Sbjct: 191 VELDVADVPDPPRGVKVSDVSRDSVNLTWTEPASDGGSKITNYIVEKCATTAERWLRVGQ 250
Query: 231 HVIGKEVDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPSPQYNTPADKP 287
++ N L ++Y+F+VIA N+ G +PS PS T DK
Sbjct: 251 ----------ARETRYTVIN-LFGKTSYQFRVIAENKFGLSKPSEPSEPTITKEDKT 296
Score = 72.9 bits (179), Expect = 4e-14
Identities = 56/343 (16%), Positives = 89/343 (25%), Gaps = 86/343 (25%)
Query: 86 QLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLE 145
+ + + N L C W G I L L
Sbjct: 9 EELRNLNVRYQSNATLVCKV--TGHPKPIVKWYRQGKEIIADGLKYRIQEFKG-GYHQLI 65
Query: 146 ITNASFADAGEYECVVKSTVGKISTKTTVIVEGPPGL--------PGGVQVVE------- 190
I + + DA Y+ + G +S ++ VE P + G V +
Sbjct: 66 IASVTDDDATVYQVRATNQGGSVSGTASLEVEVPAKIHLPKTLEGMGAVHALRGEVVSIK 125
Query: 191 ---VHKTSATIQWTDGATNGRPIT---HYKIIARTNWNSTWFNVSEHVIGKEVDRY-TGR 243
K I W I HY++I ++ S V V+R G
Sbjct: 126 IPFSGKPDPVITWQ---KGQDLIDNNGHYQVIVTRSFTSL-------VFPNGVERKDAGF 175
Query: 244 KEASIENVLVPWSTYEFKVIAGNELGYGEPSSPSPQYNTPADKPYQAPSRIGGGGGKIGD 303
+ V A N G + + AD P P + K+ D
Sbjct: 176 ----------------YVVCAKNRFGIDQKTV----ELDVADVP-DPPRGV-----KVSD 209
Query: 304 LS-----ISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETLKEYGNVGIAVVRIPSEFY 358
+S ++W P + Y + + V + Y
Sbjct: 210 VSRDSVNLTWTE-PASDGGSKITNYIVEKCATTAERWL------------RVGQARETRY 256
Query: 359 -------YTEYEVKVQAINDVGPGPESEVVTIFSAEDMPQVAP 394
T Y+ +V A N G SE ++ A
Sbjct: 257 TVINLFGKTSYQFRVIAENKFGLSKPSEPSEPTITKEDKTRAM 299
Score = 52.5 bits (126), Expect = 2e-07
Identities = 26/130 (20%), Positives = 46/130 (35%), Gaps = 11/130 (8%)
Query: 468 KVMAYNNAGEGPESERYLERTYRKAPQKPPSAVHIKGINPTTVHVTWRYVSPSFE-EEPI 526
V A N G ++ +E P PP V + ++ +V++TW P+ + I
Sbjct: 177 VVCAKNRFGI---DQKTVELDVADVPD-PPRGVKVSDVSRDSVNLTWT--EPASDGGSKI 230
Query: 527 IGYKVRVWEVDQDMSRANDTIIPVGNTLDADIVDLSPGKRYHMRVLAFSNGGDGRMSSPA 586
Y V + +++L Y RV+A + G + S P+
Sbjct: 231 TNYIVEKCATTAERWLRVGQA----RETRYTVINLFGKTSYQFRVIAENKFGLSKPSEPS 286
Query: 587 ITFQMGEEKE 596
E+K
Sbjct: 287 EPTITKEDKT 296
Score = 37.8 bits (88), Expect = 0.008
Identities = 23/141 (16%), Positives = 44/141 (31%), Gaps = 19/141 (13%)
Query: 365 KVQAINDVGPGPESEVVTIFSAEDMPQVAPQGVFSRGFNSTAINVTWNPIELIRENIRGR 424
V A N G + D+P P+GV + ++N+TW + +
Sbjct: 177 VVCAKNRFG---IDQKTVELDVADVPD-PPRGVKVSDVSRDSVNLTWTEP---ASDGGSK 229
Query: 425 LIGHRIKYWKEDNPEETAVYYLSRTTRNWALIVGLQPDTKYYVKVMAYNNAGEG---PES 481
+ + ++ V + ++ L T Y +V+A N G S
Sbjct: 230 ITNYIVEKCATTAERWLRV---GQARETRYTVINLFGKTSYQFRVIAENKFGLSKPSEPS 286
Query: 482 ERYLERTYRKAPQKPPSAVHI 502
E + A++
Sbjct: 287 EPT------ITKEDKTRAMNY 301
>1cfb_A Drosophila neuroglian; neural adhesion molecule; HET: NAG; 2.00A
{Drosophila melanogaster} SCOP: b.1.2.1 b.1.2.1
Length = 205
Score = 183 bits (467), Expect = 1e-54
Identities = 61/217 (28%), Positives = 96/217 (44%), Gaps = 16/217 (7%)
Query: 175 IVEGPPGLPGGVQVVEVHKTSATIQWTDGATNGRPITHYKIIARTNWNS-TWFNVSEHVI 233
IV+ P P + A I W N PI HY I T++ +W E V
Sbjct: 1 IVQDVPNAPKLT-GITCQADKAEIHWEQQGDNRSPILHYTIQFNTSFTPASWDAAYEKVP 59
Query: 234 GKEVDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPSPQYNTPADKPYQAPSR 293
+ + PW+ Y F+VIA N++G PS+ S T D P++ P
Sbjct: 60 NTDSSFVVQ---------MSPWANYTFRVIAFNKIGASPPSAHSDSCTTQPDVPFKNPDN 110
Query: 294 IGGGGGKIGDLSISWEPLPREKQNAPNIYYKIFWRKKN-DTEFQSETLKEYGNVGIAVVR 352
+ G G + +L ISW P+P + NAPN +Y + W++ +++ + + +
Sbjct: 111 VVGQGTEPNNLVISWTPMPEIEHNAPNFHYYVSWKRDIPAAAWENNNIF---DWRQNNIV 167
Query: 353 IPSEFYYTEYEVKVQAINDVGPGPES-EVVTIFSAED 388
I + + +Y +KV AIND G + E V +S ED
Sbjct: 168 IADQPTFVKYLIKVVAINDRGESNVAAEEVVGYSGED 204
Score = 107 bits (268), Expect = 1e-26
Identities = 33/181 (18%), Positives = 63/181 (34%), Gaps = 11/181 (6%)
Query: 305 SISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETLKEYGNVGIAVVR--IPSEFYYTEY 362
I WE + +P ++Y I + ++ N + V P + Y
Sbjct: 22 EIHWEQ--QGDNRSPILHYTIQFNTSFTPASWDAAYEKVPNTDSSFVVQMSP----WANY 75
Query: 363 EVKVQAINDVGPGPESEVVTIFSA-EDMPQVAPQGVFSRGFNSTAINVTWNPIELIRENI 421
+V A N +G P S + D+P P V +G + ++W P+
Sbjct: 76 TFRVIAFNKIGASPPSAHSDSCTTQPDVPFKNPDNVVGQGTEPNNLVISWTPMP--EIEH 133
Query: 422 RGRLIGHRIKYWKEDNPEETAVYYLSRTTRNWALIVGLQPDTKYYVKVMAYNNAGEGPES 481
+ + + ++ + +N +I KY +KV+A N+ GE +
Sbjct: 134 NAPNFHYYVSWKRDIPAAAWENNNIFDWRQNNIVIADQPTFVKYLIKVVAINDRGESNVA 193
Query: 482 E 482
Sbjct: 194 A 194
Score = 103 bits (258), Expect = 2e-25
Identities = 36/196 (18%), Positives = 75/196 (38%), Gaps = 10/196 (5%)
Query: 403 NSTAINVTWNPIELIRENIRGRLIGHRIKYWKEDNPEETAVYYLSRTTRNWALIVGLQPD 462
+ + W + + R ++ + I++ P Y + + +V + P
Sbjct: 17 QADKAEIHWEQ----QGDNRSPILHYTIQFNTSFTPASWDAAYEKVPNTDSSFVVQMSPW 72
Query: 463 TKYYVKVMAYNNAGEGP---ESERYLERTYRKAPQKPPSAVHIKGINPTTVHVTWRYVSP 519
Y +V+A+N G P S+ T P K P V +G P + ++W +
Sbjct: 73 ANYTFRVIAFNKIGASPPSAHSDSC--TTQPDVPFKNPDNVVGQGTEPNNLVISWTPMPE 130
Query: 520 SFEEEPIIGYKVRVWEVDQDMSRANDTIIPVGNTLDADIVDLSPGKRYHMRVLAFSNGGD 579
P Y V W+ D + + I + I D +Y ++V+A ++ G+
Sbjct: 131 IEHNAPNFHYYVS-WKRDIPAAAWENNNIFDWRQNNIVIADQPTFVKYLIKVVAINDRGE 189
Query: 580 GRMSSPAITFQMGEEK 595
+++ + GE++
Sbjct: 190 SNVAAEEVVGYSGEDR 205
Score = 58.6 bits (142), Expect = 6e-10
Identities = 17/112 (15%), Positives = 36/112 (32%), Gaps = 10/112 (8%)
Query: 177 EGPPGLPGGVQVVEVHKTSATIQWT--DGATNGRPITHYKIIARTNWNSTWFNVSEHVIG 234
+ P P V + I WT + P HY + + + + + + +
Sbjct: 102 DVPFKNPDNVVGQGTEPNNLVISWTPMPEIEHNAPNFHYYVSWKRDIPAAAWENNN-IFD 160
Query: 235 KEVDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPSPQYNTPADK 286
+ I + + Y KV+A N+ G ++ + D+
Sbjct: 161 WRQNNIV------IAD-QPTFVKYLIKVVAINDRGESNVAAEEVVGYSGEDR 205
>1fnf_A Fibronectin; RGD, extracellular matrix, cell adhesion protein;
2.00A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 b.1.2.1
b.1.2.1 PDB: 1mfn_A 2mfn_A 2ck2_A
Length = 368
Score = 173 bits (441), Expect = 6e-49
Identities = 72/413 (17%), Positives = 131/413 (31%), Gaps = 53/413 (12%)
Query: 179 PPGLPGGVQVVEV-HKTSATIQWTDGATNGRPITHYKIIARTNWNSTWFNVSEHVIGKEV 237
P P + + T+ W IT Y+I ++ E V +
Sbjct: 1 PLSPPTNLHLEANPDTGVLTVSWERS--TTPDITGYRITTTPTNGQQGNSLEEVVHADQ- 57
Query: 238 DRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPSPQYNTPADKPYQAPSRIGGG 297
+ +N L P Y V + P S + P P+ +
Sbjct: 58 ------SSCTFDN-LSPGLEYNVSVYTVKDDKESVPISDTIIPAVPP------PTDLRFT 104
Query: 298 GGKIGDLSISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETLKEYGNVGIAVVR--IPS 355
+ ++W P P + + + + + E +E + V+ +P
Sbjct: 105 NIGPDTMRVTWAPPP----SIDLTNFLVRYSPVKNEEDVAELSIS-PSDNAVVLTNLLP- 158
Query: 356 EFYYTEYEVKVQAINDVGPGPESEVVTIFSAEDMPQVAPQGVFSRGFNSTAINVTWNPIE 415
TEY V V ++ + +P G+ + + V W
Sbjct: 159 ---GTEYVVSVSSVYEQHESTPLRGRQ-----KTGLDSPTGIDFSDITANSFTVHWIAP- 209
Query: 416 LIRENIRGRLIGHRIKYWKEDNPEETAVYYLSRTTRNWALIVGLQPDTKYYVKVMAYNNA 475
R + G+RI++ E + +RN + L P T+Y V ++A N
Sbjct: 210 ------RATITGYRIRHHPEHFSGRPREDRVP-HSRNSITLTNLTPGTEYVVSIVALNGR 262
Query: 476 GEGPESERYLERTYRKAPQKPPSAVHIKGINPTTVHVTWRYVSPSFEEEPIIGYKVRVWE 535
E P + P + + PT++ ++W + + Y++ E
Sbjct: 263 EESPLLI-----GQQSTVSDVPRDLEVVAATPTSLLISWDAPAV-----TVRYYRITYGE 312
Query: 536 VDQDMSRANDTIIPVGNTLDADIVDLSPGKRYHMRVLAFSNGGDGRMSSPAIT 588
+ T+ G+ A I L PG Y + V A + GD SS I+
Sbjct: 313 TGGNSPVQEFTV--PGSKSTATISGLKPGVDYTITVYAVTGRGDSPASSKPIS 363
Score = 124 bits (313), Expect = 2e-31
Identities = 51/338 (15%), Positives = 101/338 (29%), Gaps = 43/338 (12%)
Query: 156 EYECVVKS-TVGKISTKTTVIVEGPPGLPGGVQVVEVHKTSATIQWTDGATNGRPITHYK 214
EY V + K S + + P ++ + + + W +T++
Sbjct: 70 EYNVSVYTVKDDKESVPISDTIIPAVPPPTDLRFTNIGPDTMRVTWA--PPPSIDLTNFL 127
Query: 215 IIARTNWNSTWFNVSEHVIGKEVDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPS 274
+ N E+ + N L+P + Y V + E P
Sbjct: 128 VRYSPVKNEEDV--------AELSISPSDNAVVLTN-LLPGTEYVVSVSSVYEQHESTPL 178
Query: 275 SPSPQYNTPADKPYQAPSRIGGGGGKIGDLSISWEPLPREKQNAPNIYYKIFWRKKNDTE 334
+P+ I ++ W A Y+I ++ +
Sbjct: 179 R------GRQKTGLDSPTGIDFSDITANSFTVHWIAP-----RATITGYRIRHHPEHFSG 227
Query: 335 FQSETLKEYGNVGIAVVR--IPSEFYYTEYEVKVQAINDVGPGPESEVVTIFSAEDMPQV 392
E + + P TEY V + A+N P +
Sbjct: 228 RPREDRVP-HSRNSITLTNLTP----GTEYVVSIVALNGREESPLLIG----QQSTVSD- 277
Query: 393 APQGVFSRGFNSTAINVTWNPIELIRENIRGRLIGHRIKYWKEDNPEETAVYYLSRTTRN 452
P+ + T++ ++W+ + +RI Y + + + +++
Sbjct: 278 VPRDLEVVAATPTSLLISWDAPA-------VTVRYYRITYGETGGNSPVQEFTVP-GSKS 329
Query: 453 WALIVGLQPDTKYYVKVMAYNNAGEGPESERYLERTYR 490
A I GL+P Y + V A G+ P S + + YR
Sbjct: 330 TATISGLKPGVDYTITVYAVTGRGDSPASSKPISINYR 367
>3p4l_A Neogenin; iron homeostasis, hemojuvelin receptor, FNIII domain,
fibron type III, cell adhesion; 1.80A {Homo sapiens}
PDB: 1x5k_A
Length = 211
Score = 164 bits (418), Expect = 2e-47
Identities = 50/208 (24%), Positives = 78/208 (37%), Gaps = 7/208 (3%)
Query: 388 DMPQVAPQGVFSRGFNSTAINVTWNPIELIRENIRGRLIGHRIKYWKEDNPEETAVYYLS 447
D+P + P GV + + I +TW L + + + WK + P T +
Sbjct: 2 DLPMMPPVGVQASILSHDTIRITWADNSLPKHQKITDSRYYTV-RWKTNIPANTKYKNAN 60
Query: 448 RTTRNWALIVGLQPDTKYYVKVMAYNNAGEGPESERYLERTYRKAPQKPPSAVHIKG--I 505
T L+ GL+P+T Y VM S T+ P PP V +
Sbjct: 61 -ATTLSYLVTGLKPNTLYEFSVMVTKGRRSSTWSMTAHGTTFELVPTSPPKDVTVVSKEG 119
Query: 506 NPTTVHVTWRYVSPSFEEEPIIGYKVRVWEVDQDMSRANDTIIPVGNTLDADIVDLSPGK 565
P T+ V W+ PS I GY + VGN L I +L+
Sbjct: 120 KPKTIIVNWQ--PPSEANGKITGYIIYYSTDVNAEIHDWVIEPVVGNRLTHQIQELTLDT 177
Query: 566 RYHMRVLAFSNGGDGRMSSPAITFQMGE 593
Y+ ++ A ++ G G MS + F+ +
Sbjct: 178 PYYFKIQARNSKGMGPMSEA-VQFRTPK 204
Score = 141 bits (357), Expect = 6e-39
Identities = 51/223 (22%), Positives = 74/223 (33%), Gaps = 17/223 (7%)
Query: 284 ADKPYQAPSRIGGGGGKIGDLSISWEP--LPREKQNAPNIYYKIFWRKKNDTEFQSETLK 341
AD P P + + I+W LP+ ++ + YY + W+ + +
Sbjct: 1 ADLPMMPPVGVQASILSHDTIRITWADNSLPKHQKITDSRYYTVRWKTNIPANTKYKNA- 59
Query: 342 EYGNVGIAVVRIPSEFYYTEYEVKVQAINDVGPGPESEVVTIFSAEDMPQVAPQG--VFS 399
N + T YE V S + E +P P+ V S
Sbjct: 60 ---NATTLSYLVTGLKPNTLYEFSVMVTKGRRSSTWSMTAHGTTFELVPTSPPKDVTVVS 116
Query: 400 RGFNSTAINVTWNPIELIRENIRGRLIGHRIKYWKEDNPEETAVYYLSRT-TRNWALIVG 458
+ I V W P G++ G+ I Y + N E R I
Sbjct: 117 KEGKPKTIIVNWQPP----SEANGKITGYIIYYSTDVNAEIHDWVIEPVVGNRLTHQIQE 172
Query: 459 LQPDTKYYVKVMAYNNAGEGPESERYLERTYRKAPQKPPSAVH 501
L DT YY K+ A N+ G GP SE RT P+ H
Sbjct: 173 LTLDTPYYFKIQARNSKGMGPMSEAVQFRT----PKAHHHHHH 211
Score = 106 bits (266), Expect = 2e-26
Identities = 40/217 (18%), Positives = 66/217 (30%), Gaps = 16/217 (7%)
Query: 179 PPGLPGGVQVVEVHKTSATIQWTDGATNGR----PITHYKIIARTNWNSTWFNVSEHVIG 234
P P GVQ + + I W D + +Y + +TN + + +
Sbjct: 4 PMMPPVGVQASILSHDTIRITWADNSLPKHQKITDSRYYTVRWKTNIPANTKYKNAN--- 60
Query: 235 KEVDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPSPQYNTPADKPYQAPSRI 294
+ L P + YEF V+ S + T P P +
Sbjct: 61 ------ATTLSYLVTG-LKPNTLYEFSVMVTKGRRSSTWSMTAHGT-TFELVPTSPPKDV 112
Query: 295 GGGGGKIGDLSISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETLKEYGNVGIAVVRIP 354
+ +I P + N Y I++ + E ++ +I
Sbjct: 113 TVVSKEGKPKTIIVNWQPPSEANGKITGYIIYYSTDVNAEIHDWVIEPVVG-NRLTHQIQ 171
Query: 355 SEFYYTEYEVKVQAINDVGPGPESEVVTIFSAEDMPQ 391
T Y K+QA N G GP SE V + +
Sbjct: 172 ELTLDTPYYFKIQARNSKGMGPMSEAVQFRTPKAHHH 208
Score = 52.1 bits (125), Expect = 9e-08
Identities = 22/103 (21%), Positives = 33/103 (32%), Gaps = 10/103 (9%)
Query: 177 EGPPGLPG---GVQVVEVHKTSATIQWTDGATNGRPITHYKIIARTNWNSTWFNVSEHVI 233
E P P V E + + W + IT Y I T+ N+ + +
Sbjct: 102 ELVPTSPPKDVTVVSKEGKPKTIIVNWQPPSEANGKITGYIIYYSTDVNAEIHDWVIEPV 161
Query: 234 GKEVDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSP 276
+ I+ L + Y FK+ A N G G S
Sbjct: 162 VGNRLTHQ------IQE-LTLDTPYYFKIQARNSKGMGPMSEA 197
>3f7q_A Integrin beta-4, GP150; hemidesmosome, cell adhesion, carcinoma,
epidermolysis bullosa, alternative splicing, disease
mutation, glycoprotein; HET: 1PE PG4; 1.75A {Homo
sapiens} PDB: 3f7r_A 3f7p_C 1qg3_A
Length = 234
Score = 164 bits (418), Expect = 4e-47
Identities = 48/207 (23%), Positives = 77/207 (37%), Gaps = 15/207 (7%)
Query: 387 EDMPQVAPQGVFSRGFNSTAINVTWNPIELIRENIRGRLIGHRIKYWKEDNPEETAVYYL 446
M APQ ++ S I+ W P G+ +G+R+KYW + + E A
Sbjct: 2 SHMDLGAPQNPNAKAAGSRKIHFNWLPP-------SGKPMGYRVKYWIQGDSESEAHLL- 53
Query: 447 SRTTRNWALIVGLQPDTKYYVKVMAYNNAGEGPESERYLERTYRKAPQKPPSAVHIKGIN 506
+ + L P Y +KV AY GEGP S RT+++ P P + ++
Sbjct: 54 -DSKVPSVELTNLYPYCDYEMKVCAYGAQGEGPYSSLVSCRTHQEVPS-EPGRLAFNVVS 111
Query: 507 PTTVHVTWRYVSPSFEEEPIIGYKVRVWEVDQD---MSRANDTIIPVGNTLDADIVDLSP 563
T ++W P+ I Y+V V+ D + ++ I +L
Sbjct: 112 STVTQLSWA--EPAETNGEITAYEVCYGLVNDDNRPIGPMKKVLVDNPKNRMLLIENLRE 169
Query: 564 GKRYHMRVLAFSNGGDGRMSSPAITFQ 590
+ Y V A + G G I
Sbjct: 170 SQPYRYTVKARNGAGWGPEREAIINLA 196
Score = 138 bits (349), Expect = 2e-37
Identities = 46/243 (18%), Positives = 83/243 (34%), Gaps = 23/243 (9%)
Query: 285 DKPYQAPSRIGGGGGKIGDLSISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETLKEYG 344
AP + +W P + + Y++ + + D+E ++ L
Sbjct: 3 HMDLGAPQNPNAKAAGSRKIHFNWLP-----PSGKPMGYRVKYWIQGDSESEAHLLD--S 55
Query: 345 NVGIAVVR--IPSEFYYTEYEVKVQAINDVGPGPESEVVTIFSAEDMPQVAPQGVFSRGF 402
V + P Y +YE+KV A G GP S +V+ + +++P P +
Sbjct: 56 KVPSVELTNLYP----YCDYEMKVCAYGAQGEGPYSSLVSCRTHQEVPS-EPGRLAFNVV 110
Query: 403 NSTAINVTWNPIELIRENIRGRLIGHRIKYWKEDNPEETAVYYLSRTTRN----WALIVG 458
+ST ++W G + + + Y ++ N LI
Sbjct: 111 SSTVTQLSWAEPA----ETNGEITAYEVCYGLVNDDNRPIGPMKKVLVDNPKNRMLLIEN 166
Query: 459 LQPDTKYYVKVMAYNNAGEGPESERYLERTYRK-APQKPPSAVHIKGINPTTVHVTWRYV 517
L+ Y V A N AG GPE E + + P P I ++ + ++
Sbjct: 167 LRESQPYRYTVKARNGAGWGPEREAIINLATQPKRPMSIPIIPDIPIVDAQSGEDYDSFL 226
Query: 518 SPS 520
S
Sbjct: 227 MYS 229
Score = 95.6 bits (238), Expect = 2e-22
Identities = 44/241 (18%), Positives = 72/241 (29%), Gaps = 30/241 (12%)
Query: 179 PPGLPGGVQVVEVHKTSATIQWTDGATNGRPITHYKIIARTNWNSTWFNVSEHVIGKEVD 238
G P W +G+ Y++ +S +
Sbjct: 5 DLGAPQNPNAKAAGSRKIHFNWL--PPSGK-PMGYRVKYWIQGDSES---------EAHL 52
Query: 239 RYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPSPQYNTPADKPYQAPSRIGGGG 298
+ + N L P+ YE KV A G G SS T + P P R+
Sbjct: 53 LDSKVPSVELTN-LYPYCDYEMKVCAYGAQGEGPYSSLVSCR-THQEVP-SEPGRL---- 105
Query: 299 GKIGDLS-----ISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETLKEYGNVGIAV--V 351
+S +SW P E N Y++ + ND +K+ +
Sbjct: 106 -AFNVVSSTVTQLSWAE-PAE-TNGEITAYEVCYGLVNDDNRPIGPMKKVLVDNPKNRML 162
Query: 352 RIPSEFYYTEYEVKVQAINDVGPGPESE-VVTIFSAEDMPQVAPQGVFSRGFNSTAINVT 410
I + Y V+A N G GPE E ++ + + P P ++ +
Sbjct: 163 LIENLRESQPYRYTVKARNGAGWGPEREAIINLATQPKRPMSIPIIPDIPIVDAQSGEDY 222
Query: 411 W 411
Sbjct: 223 D 223
Score = 63.6 bits (155), Expect = 2e-11
Identities = 25/140 (17%), Positives = 41/140 (29%), Gaps = 6/140 (4%)
Query: 177 EGPPGLPGGVQVVEVHKTSATIQWTDGATNGRPITHYKIIARTNWNSTWFNVSEHVIGKE 236
+ P PG + V T + W + A IT Y++ + + +
Sbjct: 96 QEVPSEPGRLAFNVVSSTVTQLSWAEPAETNGEITAYEVCYGLVNDDNRPIGPMKKVLVD 155
Query: 237 VDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPSPQYNTPADKPYQAPSRIGG 296
+ IEN L Y + V A N G+G T +P P
Sbjct: 156 NPKNR---MLLIEN-LRESQPYRYTVKARNGAGWGPEREAIINLATQPKRPMSIPIIPDI 211
Query: 297 GGGKI--GDLSISWEPLPRE 314
G+ S+ +
Sbjct: 212 PIVDAQSGEDYDSFLMYSDD 231
>2dtg_E Insulin receptor; IR ectodomain, X-RAY crystallography, hormone
receptor/immune system complex; 3.80A {Homo sapiens}
SCOP: b.1.2.1 b.1.2.1 b.1.2.1 c.10.2.5 c.10.2.5 g.3.9.1
PDB: 3loh_E
Length = 897
Score = 174 bits (441), Expect = 4e-46
Identities = 91/631 (14%), Positives = 173/631 (27%), Gaps = 76/631 (12%)
Query: 7 NVTIFCNPEAAPKPKFVWKKDGN-IIGSGGRRKIFEN-----GNLLISPVSRDDSGIYSC 60
+ + C P P PK +G I S + G+L+I+ R + + +
Sbjct: 296 SSNLLCTPCLGPCPKVCHLLEGEKTIDSVTSAQELRGCTVINGSLIINI--RGGNNLAAE 353
Query: 61 TATNVHGMDESKGRLIVLHGPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHN 120
N+ ++E G L + + + L+L E Y
Sbjct: 354 LEANLGLIEEISGYLKIRRSYALVSLSFFR-------KLRLIRGETLEIGNYSFYA---- 402
Query: 121 GVRIGNMDLNELETP---NINIDGGLLEITNASFADAGEYECVV-------KSTVGKIST 170
+ N +L +L N+ I G L E + + I+
Sbjct: 403 ---LDNQNLRQLWDWSKHNLTITQGKLFFHYNPKLCLSEIHKMEEVSGTKGRQERNDIAL 459
Query: 171 KTTVIVEGPPGLPGGVQVVEVHKTSATIQWTDGA-TNGRPITHYKII------------- 216
KT + ++W + R + + +
Sbjct: 460 KTNGDQASCENELLKFSYIRTSFDKILLRWEPYWPPDFRDLLGFMLFYKEAPYQNVTEFD 519
Query: 217 -ARTNWNSTWFNVSEHVIGKEVDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPS- 274
+++W V + D + + L PW+ Y V +
Sbjct: 520 GQDACGSNSWTVVDIDPPLRSNDPKSQNHPGWLMRGLKPWTQYAIFVKTLVTFSDERRTY 579
Query: 275 ---SPSPQYNTPADKPYQAPSRIGGGGGKIGDLSISWEPLPREKQNAPNIYYKIFWRKKN 331
S T A P P + + W+P N +Y +FW ++
Sbjct: 580 GAKSDIIYVQTDATNP-SVPLDPISVSNSSSQIILKWKPP--SDPNGNITHYLVFWERQA 636
Query: 332 DTEFQSETLKEYGNVGIAVVRIPSEFYYTEYEVKVQAINDVGPGPESEVVTIFSAEDMPQ 391
+ E + + ++ + + P+
Sbjct: 637 EDSELFEL---------DYCLKGLKLPSRTWSPPFESEDSQKHNQSEYEDSAGECCSCPK 687
Query: 392 VAPQGVFSRGFNSTAINVTWNP--IELIRENIRGRLIGHRIKYWKEDNPEETAVYYLSRT 449
Q + ++ T+ ++ R N EE +
Sbjct: 688 TDSQ--ILKELEESSFRKTFEDYLHNVVFVPRPSRKRRSLGDVGNAGNNEEHRPFEKV-V 744
Query: 450 TRNWALIVGLQPDTKYYVKVMAYNNAGEGP---ESERYLERT-YRKAPQKPPSAVHIKGI 505
+ +I GL+ T Y +++ A N + RT V +
Sbjct: 745 NKESLVISGLRHFTGYRIELQACNQDTPEERCSVAAYVSARTMPEAKADDIVGPVTHEIF 804
Query: 506 NPTTVHVTWRYVSPSFEEEPIIGYKVRVWEVDQDMSRANDTIIPVGNTLDADIVDLSPGK 565
VH+ W+ P I+ Y+V + DT + LSPG
Sbjct: 805 ENNVVHLMWQ--EPKEPNGLIVLYEVSYRRYGDEELHLCDTRKHFALERGCRLRGLSPG- 861
Query: 566 RYHMRVLAFSNGGDGRMSSPAITFQMGEEKE 596
Y +R+ A S G+G + P F + + +
Sbjct: 862 NYSVRIRATSLAGNGSWTEP-TYFYVTDYLD 891
Score = 84.6 bits (208), Expect = 4e-17
Identities = 33/209 (15%), Positives = 74/209 (35%), Gaps = 13/209 (6%)
Query: 188 VVEVHKTSATIQWTDGATNGRPITHYKIIARTNWNSTWFNVSEHVIGKEVDRYTGRKEAS 247
+ E+ ++S + D N + + + N + + ++ ++
Sbjct: 693 LKELEESSFRKTFEDYLHNV--VFVPRPSRKRRSLGDVGNAGNNEEHRPFEKVVNKESLV 750
Query: 248 IENVLVPWSTYEFKVIAGNELGYGEPSSPSPQYN---TPADKPYQAPSRIGGGGGKIGDL 304
I L ++ Y ++ A N+ E S + + P K + + +
Sbjct: 751 ISG-LRHFTGYRIELQACNQDTPEERCSVAAYVSARTMPEAKADDIVGPVTHEIFENNVV 809
Query: 305 SISWEPLPREKQNAPNIYYKIFWRKKNDTEFQS-ETLKEYGNVGIAVVRIPSEFYYTEYE 363
+ W+ P ++ N + Y++ +R+ D E +T K + +R Y
Sbjct: 810 HLMWQE-P-KEPNGLIVLYEVSYRRYGDEELHLCDTRKHFALERGCRLR---GLSPGNYS 864
Query: 364 VKVQAINDVGPGPESEVVTIFSAEDMPQV 392
V+++A + G G +E F D V
Sbjct: 865 VRIRATSLAGNGSWTEPTY-FYVTDYLDV 892
>3t1w_A Four-domain fibronectin fragment; human fibronectin, FN type-III
domain, oncofetal splice VARI extra-domain B, EIIIB,
ED-B, angiogenesis, integrin; 2.40A {Homo sapiens}
Length = 375
Score = 165 bits (420), Expect = 6e-46
Identities = 66/413 (15%), Positives = 124/413 (30%), Gaps = 52/413 (12%)
Query: 179 PPGLPGGVQVVEV-HKTSATIQWTDGATNGRPITHYKIIARTNWNSTWFNVSEHVIGKEV 237
P P + + T+ W + IT Y+I ++ E V +
Sbjct: 2 PLSPPTNLHLEANPDTGVLTVSWE--RSTTPDITGYRITTTPTNGQQGNSLEEVVHADQ- 58
Query: 238 DRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPSPQYNTPADKPYQAPSRIGGG 297
+ +N L P Y V + P S + P + +
Sbjct: 59 ------SSCTFDN-LSPGLEYNVSVYTVKDDKESVPIS----DTIIPEVP--QLTDLSFV 105
Query: 298 GGKIGDLSISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETLKEYGNVGIAVVR--IPS 355
+ + W PL ++ I Y+I + E + +VG V P
Sbjct: 106 DITDSSIGLRWTPLN----SSTIIGYRITVVAAGEGIPIFEDFVD-SSVGYYTVTGLEP- 159
Query: 356 EFYYTEYEVKVQAINDVGPGPESEVVTIFSAEDMPQVAPQGVFSRGFNSTAINVTWNPIE 415
+Y++ V + + G + + P + + VTW P
Sbjct: 160 ---GIDYDISVITLINGGESAPTTLTQQT-----AVPPPTDLRFTNIGPDTMRVTWAPPP 211
Query: 416 LIRENIRGRLIGHRIKYWKEDNPEETAVYYLSRTTRNWALIVGLQPDTKYYVKVMAYNNA 475
L ++Y N E+ A +S + N ++ L P T+Y V V +
Sbjct: 212 ------SIDLTNFLVRYSPVKNEEDVAELSIS-PSDNAVVLTNLLPGTEYVVSVSSVYEQ 264
Query: 476 GEGPESERYLERTYRKAPQKPPSAVHIKGINPTTVHVTWRYVSPSFEEEPIIGYKVRVWE 535
E +K P+ + I + V W I GY++R
Sbjct: 265 HESTPLR-----GRQKTGLDSPTGIDFSDITANSFTVHWIAPRA-----TITGYRIRHHP 314
Query: 536 VDQDMSRANDTIIPVGNTLDADIVDLSPGKRYHMRVLAFSNGGDGRMSSPAIT 588
D + + + +L+PG Y + ++A + + + +
Sbjct: 315 EHFSGRPREDRV--PHSRNSITLTNLTPGTEYVVSIVALNGREESPLLIGQQS 365
Score = 121 bits (306), Expect = 3e-30
Identities = 61/331 (18%), Positives = 108/331 (32%), Gaps = 44/331 (13%)
Query: 156 EYECVVKS-TVGKISTKTTVIVEGPPGLPGGVQVVEVHKTSATIQWTDGATNGRPITHYK 214
EY V + K S + + + V++ +S ++WT N I Y+
Sbjct: 71 EYNVSVYTVKDDKESVPISDTIIPEVPQLTDLSFVDITDSSIGLRWT--PLNSSTIIGYR 128
Query: 215 IIARTNWNSTWFNVSEHVIGKEVDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPS 274
I + E + V YT + L P Y+ VI G P+
Sbjct: 129 ITVVAAGEGIP--IFEDFVDSSVGYYT------VTG-LEPGIDYDISVITLINGGESAPT 179
Query: 275 SPSPQYNTPADKPYQ-APSRIGGGGGKIGDLSISWEPLPREKQNAPNIYYKIFWRKKNDT 333
+ + Q T P + IG + ++W P P + + + + +
Sbjct: 180 TLTQQ--TAVPPPTDLRFTNIGPD-----TMRVTWAPPP----SIDLTNFLVRYSPVKNE 228
Query: 334 EFQSETLKEYGNVGIAVVR--IPSEFYYTEYEVKVQAINDVGPGPESEVVTIFSAEDMPQ 391
E L + V+ +P TEY V V ++ + +
Sbjct: 229 E-DVAELSISPSDNAVVLTNLLP----GTEYVVSVSSVYEQHESTPLRGRQ---KTGLD- 279
Query: 392 VAPQGVFSRGFNSTAINVTWNPIELIRENIRGRLIGHRIKYWKEDNPEETAVYYLSRTTR 451
+P G+ + + V W R + G+RI++ E + +R
Sbjct: 280 -SPTGIDFSDITANSFTVHWIAP-------RATITGYRIRHHPEHFSGRPREDRVP-HSR 330
Query: 452 NWALIVGLQPDTKYYVKVMAYNNAGEGPESE 482
N + L P T+Y V ++A N E P
Sbjct: 331 NSITLTNLTPGTEYVVSIVALNGREESPLLI 361
Score = 96.8 bits (241), Expect = 9e-22
Identities = 32/201 (15%), Positives = 70/201 (34%), Gaps = 18/201 (8%)
Query: 389 MPQVAPQGV-FSRGFNSTAINVTWNPIELIRENIRGRLIGHRIKYWKEDNPEETAVYYLS 447
MP P + ++ + V+W + G+RI + + ++ +
Sbjct: 1 MPLSPPTNLHLEANPDTGVLTVSWERST------TPDITGYRITTTPTNGQQGNSLEEVV 54
Query: 448 RTTRNWALIVGLQPDTKYYVKVMAYNNAGEGPESERYLERTYRKAPQKPPSAVHIKGINP 507
++ L P +Y V V + E + + P + + I
Sbjct: 55 HADQSSCTFDNLSPGLEYNVSVYTVKDDKESVPIS---DTIIPEVP--QLTDLSFVDITD 109
Query: 508 TTVHVTWRYVSPSFEEEPIIGYKVRVWEVDQDMSRANDTIIPVGNTLDADIVDLSPGKRY 567
+++ + W ++ S IIGY++ V + + D + + + L PG Y
Sbjct: 110 SSIGLRWTPLNSS----TIIGYRITVVAAGEGIPIFEDFV--DSSVGYYTVTGLEPGIDY 163
Query: 568 HMRVLAFSNGGDGRMSSPAIT 588
+ V+ NGG+ ++
Sbjct: 164 DISVITLINGGESAPTTLTQQ 184
Score = 77.2 bits (190), Expect = 2e-15
Identities = 35/235 (14%), Positives = 70/235 (29%), Gaps = 38/235 (16%)
Query: 156 EYECVVKS-TVGKISTKTTVIVEGPPGLPGGVQVVEVHKTSATIQWTDGATNGRPITHYK 214
+Y+ V + G S TT+ + P ++ + + + W +T++
Sbjct: 162 DYDISVITLINGGESAPTTLTQQTAVPPPTDLRFTNIGPDTMRVTWA--PPPSIDLTNFL 219
Query: 215 IIARTNWNSTWFNVSEHVIGKEVDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPS 274
+ N V+E I + + N L+P + Y V + E P
Sbjct: 220 VRYSPVKNEED--VAELSISPSDNAVV------LTN-LLPGTEYVVSVSSVYEQHESTPL 270
Query: 275 SPSPQYNTPADKPY------QAPSRIGGGGGKIGDLSISWEPLPREKQNAPNIYYKIFWR 328
+ T D P + ++ W P A Y+I
Sbjct: 271 RGRQK--TGLDSPTGIDFSDITANSF----------TVHWIA-P----RATITGYRIRHH 313
Query: 329 KKNDTEFQSETLKEYGNVGIAVVRIPSEFYYTEYEVKVQAINDVGPGPESEVVTI 383
++ + ++ + + + TEY V + A+N P
Sbjct: 314 PEHFSG---RPREDRVPHSRNSITLTNLTPGTEYVVSIVALNGREESPLLIGQQS 365
>3l5i_A Interleukin-6 receptor subunit beta; cytokine receptor, fibronectin
type III domain, alternative cell membrane, disulfide
bond; 1.90A {Homo sapiens} PDB: 3l5j_A
Length = 290
Score = 159 bits (403), Expect = 2e-44
Identities = 45/286 (15%), Positives = 87/286 (30%), Gaps = 24/286 (8%)
Query: 304 LSISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETLKEYGNVGIAVVRIPSEFYYTEYE 363
+ + W+ LP + N + Y++ + + Q+ T N V + Y
Sbjct: 25 VQLVWKTLPPFEANGKILDYEVTLTR-WKSHLQNYT----VNATKLTVNLT----NDRYL 75
Query: 364 VKVQAINDVGPGPESEVVTIFSAEDMPQVAPQGVFSRGFNSTAINVTWNPIELIRENIRG 423
+ N VG + + A D P + V W RE+++
Sbjct: 76 ATLTVRNLVGKSDAAVLTI--PACDFQATHPVMDLKAFPKDNMLWVEWTTP---RESVKK 130
Query: 424 RLIGHRIKYWKEDNPEETAVYYLSRTTRNWALIVGLQPDTKYYVKVMAYNNAGEGPESER 483
++ + K + T L L Y + V G G
Sbjct: 131 YILEWCVLSDKAPCITDWQQ--EDGTVHRTYLRGNLAESKCYLITVTPVYADGPGSPESI 188
Query: 484 YLERTYRKAPQKPPSAVHIKGINPTTVHVTWRYVSPSFEEEPIIGYKVRVWEVDQDMSRA 543
+ P K P+ V K + + W + + I Y + + + +
Sbjct: 189 KA-YLKQAPPSKGPT-VRTKKVGKNEAVLEWDQLPVDVQNGFIRNYTIFYRTIIGNETAV 246
Query: 544 NDTIIPVGNTLDADIVDLSPGKRYHMRVLAFSNGGDGRMSSPAITF 589
N + + + L+ Y +R+ A+++ G P TF
Sbjct: 247 NVD----SSHTEYTLSSLTSDTLYMVRMAAYTDEGGK--DGPEFTF 286
Score = 153 bits (388), Expect = 3e-42
Identities = 46/309 (14%), Positives = 83/309 (26%), Gaps = 35/309 (11%)
Query: 178 GPPGLPGGVQVVEVHK-TSATIQW--TDGATNGRPITHYKIIARTNWNSTWFNVSEHVIG 234
P + + + W I Y + T W S N + +
Sbjct: 6 KAPSFWYKIDPSHTQGYRTVQLVWKTLPPFEANGKILDY-EVTLTRWKSHLQNYTVN--- 61
Query: 235 KEVDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPSPQYNTPADKPYQAPSRI 294
A+ V + Y + N +G S + D P
Sbjct: 62 -----------ATKLTVNLTNDRYLATLTVRNLVG---KSDAAVLTIPACDFQATHPVMD 107
Query: 295 GGGGGKIGDLSISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETLKEYGNVGIAVVRIP 354
K L + W Y + W +D T + + + +
Sbjct: 108 LKAFPKDNMLWVEWTT-----PRESVKKYILEWCVLSDKA-PCITDWQQEDGTVHRTYLR 161
Query: 355 SEFY-YTEYEVKVQAINDVGPGPESEVVTIFSAEDMPQVAPQGVFSRGFNSTAINVTWNP 413
Y + V + GPG E + + + P P V ++ + W+
Sbjct: 162 GNLAESKCYLITVTPVYADGPGS-PESIKAYLKQAPPSKGPT-VRTKKVGKNEAVLEWDQ 219
Query: 414 IELIRENIRGRLIGHRIKYWKEDNPEETAVYYLSRTTRNWALIVGLQPDTKYYVKVMAYN 473
+ + G + + I Y E ++ + L DT Y V++ AY
Sbjct: 220 LP--VDVQNGFIRNYTIFYRTIIGNETAVNV---DSSHTEYTLSSLTSDTLYMVRMAAYT 274
Query: 474 NAGEGPESE 482
+ G E
Sbjct: 275 DEGGKDGPE 283
Score = 84.9 bits (210), Expect = 2e-18
Identities = 35/213 (16%), Positives = 54/213 (25%), Gaps = 17/213 (7%)
Query: 169 STKTTVIVEGPPGLPGGVQVVEVHKTSATIQWTDGATNGRPITHYKIIARTNWNSTWFNV 228
+ T + P ++WT T + Y + +
Sbjct: 90 AVLTIPACDFQATHPVMDLKAFPKDNMLWVEWT---TPRESVKKYILEWCVLSDKAPCIT 146
Query: 229 SEHVIGKEVDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPSPQYNTPADKPY 288
+ L Y V G G P S P
Sbjct: 147 DWQQEDG------TVHRTYLRGNLAESKCYLITVTPVYADGPGSPESIKAY--LKQAPPS 198
Query: 289 QAPSRIGGGGGKIGDLSISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETLKEYGNVGI 348
+ P+ GK + + W+ LP + QN Y IF+R E +
Sbjct: 199 KGPTVRTKKVGK-NEAVLEWDQLPVDVQNGFIRNYTIFYRTIIGNETAVNV-----DSSH 252
Query: 349 AVVRIPSEFYYTEYEVKVQAINDVGPGPESEVV 381
+ S T Y V++ A D G E
Sbjct: 253 TEYTLSSLTSDTLYMVRMAAYTDEGGKDGPEFT 285
Score = 52.9 bits (127), Expect = 1e-07
Identities = 25/134 (18%), Positives = 46/134 (34%), Gaps = 19/134 (14%)
Query: 156 EYECVV----KSTVGKISTKTTVIVEGPPGLPGGVQVVEVHKTSATIQWTDGATNGR--P 209
Y V G + + + PP V+ +V K A ++W + +
Sbjct: 169 CYLITVTPVYADGPGSPESIKAYLKQAPPSKGPTVRTKKVGKNEAVLEWDQLPVDVQNGF 228
Query: 210 ITHYKIIARTNWNSTWFNVSEHVIGKEVDRYTGRKEASIENVLVPWSTYEFKVIAGNELG 269
I +Y I R V+ VD + E ++ + L + Y ++ A + G
Sbjct: 229 IRNYTIFYR-TIIGNETAVN-------VD--SSHTEYTLSS-LTSDTLYMVRMAAYTDEG 277
Query: 270 YGEPSSPSPQYNTP 283
+ P + TP
Sbjct: 278 GKD--GPEFTFTTP 289
Score = 40.6 bits (95), Expect = 0.001
Identities = 16/101 (15%), Positives = 28/101 (27%), Gaps = 12/101 (11%)
Query: 492 APQKPPSAVHI----KGINPTTVHVTWRYVSPSFEEEPIIGYKVRVWEVDQDMSRANDTI 547
P K PS + TV + W+ + P I+ Y+V + +
Sbjct: 3 RPSKAPSFWYKIDPSHTQGYRTVQLVWKTLPPFEANGKILDYEVTLTRWKSHLQNYTVNA 62
Query: 548 IPVGNTLDADIVDLSPGKRYHMRVLAFSNGGDGRMSSPAIT 588
+ L RY + + G + I
Sbjct: 63 TKLTVNL--------TNDRYLATLTVRNLVGKSDAAVLTIP 95
>2ed9_A Netrin receptor DCC; tumor suppressor protein DCC, colorectal
cancer suppressor, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 124
Score = 140 bits (356), Expect = 7e-40
Identities = 34/125 (27%), Positives = 52/125 (41%), Gaps = 5/125 (4%)
Query: 364 VKVQAINDVGPGPESEVVTIFSAEDMPQVAPQGVFSRGFNSTAINVTWNPIELIRENIRG 423
+ N GPG ++ +T+ + D+P PQ V NS +I V+W P G
Sbjct: 2 SSGSSGNRYGPGVSTDDITVVTLSDVPSAPPQNVSLEVVNSRSIKVSWLPPP--SGTQNG 59
Query: 424 RLIGHRIKYWKEDNPEETAVYYLSRTTRNWALIVGLQPDTKYYVKVMAYNNAGEGPESER 483
+ G++I++ K E W L GL+ ++Y +V A G GP S
Sbjct: 60 FITGYKIRHRKTTRRGEMETL---EPNNLWYLFTGLEKGSQYSFQVSAMTVNGTGPPSNW 116
Query: 484 YLERT 488
Y T
Sbjct: 117 YTAET 121
Score = 100 bits (252), Expect = 1e-25
Identities = 28/127 (22%), Positives = 47/127 (37%), Gaps = 5/127 (3%)
Query: 467 VKVMAYNNAGEGPESERYLERTYRKAPQKPPSAVHIKGINPTTVHVTWRYVSPSFEEEPI 526
+ N G G ++ T P PP V ++ +N ++ V+W + I
Sbjct: 2 SSGSSGNRYGPGVSTDDITVVTLSDVPSAPPQNVSLEVVNSRSIKVSWLPPPSGTQNGFI 61
Query: 527 IGYKVRVWEVDQDMSRANDTIIPVGNTLDADIVDLSPGKRYHMRVLAFSNGGDGRMSSPA 586
GYK+R + + + N L L G +Y +V A + G G S+
Sbjct: 62 TGYKIRHRKTTRR----GEMETLEPNNLWYLFTGLEKGSQYSFQVSAMTVNGTGPPSNW- 116
Query: 587 ITFQMGE 593
T + E
Sbjct: 117 YTAETPE 123
Score = 79.3 bits (196), Expect = 6e-18
Identities = 31/128 (24%), Positives = 44/128 (34%), Gaps = 6/128 (4%)
Query: 261 KVIAGNELGYGEPSSPSPQYNTPADKPYQAPSRIGGGGGKIGDLSISWEPLPREKQNAPN 320
+GN G G + T +D P P + + +SW P P QN
Sbjct: 3 SGSSGNRYGPGVSTDDITVV-TLSDVPSAPPQNVSLEVVNSRSIKVSWLPPPSGTQNGFI 61
Query: 321 IYYKIFWRKKNDTEFQSETLKEYGNVGIAVVRIPSEFYYTEYEVKVQAINDVGPGPESEV 380
YKI RK + ETL ++Y +V A+ G GP S
Sbjct: 62 TGYKIRHRK-TTRRGEMETL----EPNNLWYLFTGLEKGSQYSFQVSAMTVNGTGPPSNW 116
Query: 381 VTIFSAED 388
T + E+
Sbjct: 117 YTAETPEN 124
Score = 44.6 bits (106), Expect = 7e-06
Identities = 26/101 (25%), Positives = 32/101 (31%), Gaps = 15/101 (14%)
Query: 179 PPGLPGGVQVVEVHKTSATIQWT---DGATNGRPITHYKIIARTNWNSTWFNVSEHVIGK 235
P P V + V+ S + W G NG IT YKI R G+
Sbjct: 28 PSAPPQNVSLEVVNSRSIKVSWLPPPSGTQNGF-ITGYKIRHRKTTRR----------GE 76
Query: 236 EVDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSP 276
L S Y F+V A G G PS+
Sbjct: 77 METLEPNNLWYLFTG-LEKGSQYSFQVSAMTVNGTGPPSNW 116
>2edx_A Protein tyrosine phosphatase, receptor type, F; LAR protein,
leukocyte antigen related, structural genomics, NPPSFA;
NMR {Homo sapiens}
Length = 134
Score = 135 bits (342), Expect = 9e-38
Identities = 36/135 (26%), Positives = 53/135 (39%), Gaps = 3/135 (2%)
Query: 373 GPGPESEVVTIFSAEDMPQVAPQGVFSRGFNSTAINVTWNPIELIRENIRGRLIGHRIKY 432
G S + +A+ P PQ V ST + V+W P ++ G + + + Y
Sbjct: 1 GSSGSSGTIEARTAQSTPSAPPQKVMCVSMGSTTVRVSWVPPP--ADSRNGVITQYSVAY 58
Query: 433 WKED-NPEETAVYYLSRTTRNWALIVGLQPDTKYYVKVMAYNNAGEGPESERYLERTYRK 491
D V + +VGL+ T+Y V V A+ + G GPES L RT
Sbjct: 59 EAVDGEDRGRHVVDGISREHSSWDLVGLEKWTEYRVWVRAHTDVGPGPESSPVLVRTDED 118
Query: 492 APQKPPSAVHIKGIN 506
P PP V +
Sbjct: 119 VPSGPPRKVESGPSS 133
Score = 94.4 bits (235), Expect = 4e-23
Identities = 30/119 (25%), Positives = 42/119 (35%), Gaps = 1/119 (0%)
Query: 476 GEGPESERYLERTYRKAPQKPPSAVHIKGINPTTVHVTWRYVSPSFEEEPIIGYKVRVWE 535
G S RT + P PP V + TTV V+W I Y V
Sbjct: 1 GSSGSSGTIEARTAQSTPSAPPQKVMCVSMGSTTVRVSWVPPPADSRNGVITQYSVAYEA 60
Query: 536 VDQDMSRANDTIIPVGNTLDADIVDLSPGKRYHMRVLAFSNGGDGRMSSPAITFQMGEE 594
VD + + D+V L Y + V A ++ G G SSP + + E+
Sbjct: 61 VDGEDRGRHVVDGISREHSSWDLVGLEKWTEYRVWVRAHTDVGPGPESSP-VLVRTDED 118
Score = 76.3 bits (188), Expect = 8e-17
Identities = 31/129 (24%), Positives = 50/129 (38%), Gaps = 2/129 (1%)
Query: 269 GYGEPSSPSPQYNTPADKPYQAPSRIGGGGGKIGDLSISWEPLPREKQNAPNIYYKIFWR 328
G S T P P ++ + +SW P P + +N Y + +
Sbjct: 1 GSSGSSGTIEAR-TAQSTPSAPPQKVMCVSMGSTTVRVSWVPPPADSRNGVITQYSVAYE 59
Query: 329 KKNDTEFQSETLKEYGNVGIAVVRIPSEFYYTEYEVKVQAINDVGPGPESEVVTIFSAED 388
+ + + + + +TEY V V+A DVGPGPES V + + ED
Sbjct: 60 AVDGEDRGRHVVDGISR-EHSSWDLVGLEKWTEYRVWVRAHTDVGPGPESSPVLVRTDED 118
Query: 389 MPQVAPQGV 397
+P P+ V
Sbjct: 119 VPSGPPRKV 127
Score = 47.4 bits (113), Expect = 9e-07
Identities = 27/117 (23%), Positives = 38/117 (32%), Gaps = 12/117 (10%)
Query: 179 PPGLPGGVQVVEVHKTSATIQWT---DGATNGRPITHYKIIARTNWNSTWFNVSEHVIGK 235
P P V V + T+ + W + NG IT Y + I +
Sbjct: 18 PSAPPQKVMCVSMGSTTVRVSWVPPPADSRNGV-ITQYSVAYEAVDGEDRGRHVVDGISR 76
Query: 236 EVDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPSPQYNTPADKPYQAPS 292
E + + L W+ Y V A ++G G SSP T D P P
Sbjct: 77 EHSSWD------LVG-LEKWTEYRVWVRAHTDVGPGPESSPV-LVRTDEDVPSGPPR 125
>1x5h_A Neogenin; RGM binding, fibronectin type III domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
b.1.2.1
Length = 132
Score = 135 bits (341), Expect = 1e-37
Identities = 32/125 (25%), Positives = 51/125 (40%), Gaps = 3/125 (2%)
Query: 373 GPGPESEVVTIFSAEDMPQVAPQGVFSRGFNSTAINVTWNPIELIRENIRGRLIGHRIKY 432
G S V + + D+P APQ + NS +I + W P G++ G++I+Y
Sbjct: 1 GSSGSSGDVAVRTLSDVPSAAPQNLSLEVRNSKSIMIHWQPPA--PATQNGQITGYKIRY 58
Query: 433 WKEDNPEETAVYYLSRTTRNWALIVGLQPDTKYYVKVMAYNNAGEGPESERYLERTYRKA 492
K + L T+ LI GL T+Y +V A G GP ++ T+
Sbjct: 59 RKASRKSDVT-ETLVSGTQLSQLIEGLDRGTEYNFRVAALTINGTGPATDWLSAETFESD 117
Query: 493 PQKPP 497
+
Sbjct: 118 LDETR 122
Score = 89.0 bits (221), Expect = 3e-21
Identities = 26/119 (21%), Positives = 46/119 (38%), Gaps = 3/119 (2%)
Query: 476 GEGPESERYLERTYRKAPQKPPSAVHIKGINPTTVHVTWRYVSPSFEEEPIIGYKVRVWE 535
G S RT P P + ++ N ++ + W+ +P+ + I GYK+R +
Sbjct: 1 GSSGSSGDVAVRTLSDVPSAAPQNLSLEVRNSKSIMIHWQPPAPATQNGQITGYKIRYRK 60
Query: 536 VDQDMSRANDTIIPVGNTLDADIVDLSPGKRYHMRVLAFSNGGDGRMSSPAITFQMGEE 594
+ + G L I L G Y+ RV A + G G + ++ + E
Sbjct: 61 ASRKSDVTETLV--SGTQLSQLIEGLDRGTEYNFRVAALTINGTGPATDW-LSAETFES 116
Score = 67.8 bits (166), Expect = 7e-14
Identities = 30/128 (23%), Positives = 46/128 (35%), Gaps = 8/128 (6%)
Query: 269 GYGEPSSPSPQYNTPADKPYQAPSRIGGGGGKIGDLSISWEPLPREKQNAPNIYYKIFWR 328
G S T +D P AP + + I W+P QN YKI +R
Sbjct: 1 GSSGSSGDVAVR-TLSDVPSAAPQNLSLEVRNSKSIMIHWQPPAPATQNGQITGYKIRYR 59
Query: 329 KKNDTEFQSETLKEYGNVGIAVVR--IPSEFYYTEYEVKVQAINDVGPGPESEVVTIFSA 386
K + +ETL G ++ TEY +V A+ G GP ++ ++ +
Sbjct: 60 KASRKSDVTETLVS-GTQLSQLIEGLDR----GTEYNFRVAALTINGTGPATDWLSAETF 114
Query: 387 EDMPQVAP 394
E
Sbjct: 115 ESDLDETR 122
Score = 45.4 bits (108), Expect = 4e-06
Identities = 24/116 (20%), Positives = 34/116 (29%), Gaps = 14/116 (12%)
Query: 179 PPGLPGGVQVVEVHKTSATIQWT---DGATNGRPITHYKIIARTNWNSTWFNVSEHVIGK 235
P P + + + S I W NG+ IT YKI + S
Sbjct: 18 PSAAPQNLSLEVRNSKSIMIHWQPPAPATQNGQ-ITGYKI--------RYRKASRKSDVT 68
Query: 236 EVDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPSPQYNTPADKPYQAP 291
E + IE L + Y F+V A G G + T +
Sbjct: 69 ETLVSGTQLSQLIEG-LDRGTEYNFRVAALTINGTGPATDWL-SAETFESDLDETR 122
>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL
structural protein; 3.30A {Oryctolagus cuniculus}
Length = 570
Score = 144 bits (364), Expect = 8e-37
Identities = 43/176 (24%), Positives = 72/176 (40%), Gaps = 8/176 (4%)
Query: 4 EGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGN---LLISPVSRDDSGIYSC 60
+G +V + C + P + W KD + SG + KI + I V D G Y C
Sbjct: 398 KGADVHLECELQGTPPFQVSWHKDKRELRSGKKYKIMSENFLTSIHILNVDSADIGEYQC 457
Query: 61 TATNVHGMDESKGRLIVLHGPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHN 120
A+N G D G + + P + ++ I+ +QL+ + E + V W +
Sbjct: 458 KASNDVGSDTCVGSITLKAPPRFVKK-LSDISTVVGEEVQLQATIEGAEPISV--AWFKD 514
Query: 121 GVRIGNMDLNELETPNINIDGGLLEITNASFADAGEYECVVKSTVGKISTKTTVIV 176
I N + + N L+ + A A+AG+Y C +K+ G T+ V
Sbjct: 515 KGEIVRESDNIWISYSEN--IATLQFSRAEPANAGKYTCQIKNEAGTQECFATLSV 568
Score = 138 bits (349), Expect = 7e-35
Identities = 38/227 (16%), Positives = 74/227 (32%), Gaps = 27/227 (11%)
Query: 4 EGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIF---ENGNLLISPVSRDDSGIYSC 60
G V C + + W KDG ++ + L I + G Y+C
Sbjct: 115 LGFPVAFECRINGSEPLQVSWYKDGELLKDDANLQTSFIHNVATLQILQTDQSHVGQYNC 174
Query: 61 TATNVHGMDESKGRLIV--LHGPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWT 118
+A+N G S +L + P +++ P + +A + +C + + W
Sbjct: 175 SASNPLGTASSSAKLTLSEHEVPPFFDLKPVSVDLALGESGTFKCHVTGTAPIKI--TWA 232
Query: 119 HNGVRIGNMDLNELETPNINIDGGLLEITNASFADAGEYECVVKSTVGKISTKTTVIVEG 178
+ I ++ + L + + DAG+Y C + GK S + V+
Sbjct: 233 KDNREIRPGGNYKMTLVE---NTATLTVLKVTKGDAGQYTCYASNVAGKDSCSAQLGVQE 289
Query: 179 PP---GLPGGVQVVEVHKT-----------SATIQWTDGATNGRPIT 211
PP ++V+ + + W + I
Sbjct: 290 PPRFIKKLEPSRIVKQDEHTRYECKIGGSPEIKVLWY---KDETEIQ 333
Score = 134 bits (338), Expect = 2e-33
Identities = 52/231 (22%), Positives = 87/231 (37%), Gaps = 27/231 (11%)
Query: 4 EGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKI---FENGNLLISPVSRDDSGIYSC 60
G + T C+ K W KD I GG K+ L + V++ D+G Y+C
Sbjct: 211 LGESGTFKCHVTGTAPIKITWAKDNREIRPGGNYKMTLVENTATLTVLKVTKGDAGQYTC 270
Query: 61 TATNVHGMDESKGRLIVLHGPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHN 120
A+NV G D +L V P + ++L P + + + C + V +W +
Sbjct: 271 YASNVAGKDSCSAQLGVQEPPRFIKKLEPSRIVKQDEHTRYECKIGGSPEIKV--LWYKD 328
Query: 121 GVRIGNMDLNELETPNINIDGGLLEITNASFADAGEYECVVKSTVGKISTKTTVIVEGPP 180
I + +LE+ N S D+G+Y C + G S+ T++ V+ PP
Sbjct: 329 ETEIQESSKFRMSFVE---SVAVLEMYNLSVEDSGDYTCEAHNAAGSASSSTSLKVKEPP 385
Query: 181 ---GLPGGVQVVE----------VHKTSATIQWTDGATNGRPIT---HYKI 215
P V+ ++ + W + R + YKI
Sbjct: 386 VFRKKPHPVETLKGADVHLECELQGTPPFQVSWH---KDKRELRSGKKYKI 433
Score = 127 bits (322), Expect = 3e-31
Identities = 45/236 (19%), Positives = 79/236 (33%), Gaps = 23/236 (9%)
Query: 2 AGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGR---RKIFENGNLLISPVSRDDSGIY 58
+ + C +P+ K +W KD I + + L + +S +DSG Y
Sbjct: 303 VKQDEHTRYECKIGGSPEIKVLWYKDETEIQESSKFRMSFVESVAVLEMYNLSVEDSGDY 362
Query: 59 SCTATNVHGMDESKGRLIVLHGPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWT 118
+C A N G S L V P + + P + ++ L C V W
Sbjct: 363 TCEAHNAAGSASSSTSLKVKEPPVF-RKKPHPVETLKGADVHLECELQGTPPFQV--SWH 419
Query: 119 HNGVRIGNMDLNELETPNINIDGGLLEITNASFADAGEYECVVKSTVGKISTKTTVIVEG 178
+ + + ++ + + I N AD GEY+C + VG + ++ ++
Sbjct: 420 KDKRELRSGKKYKIMS---ENFLTSIHILNVDSADIGEYQCKASNDVGSDTCVGSITLKA 476
Query: 179 PP-------------GLPGGVQVVEVHKTSATIQWT-DGATNGRPITHYKIIARTN 220
PP G +Q ++ W D R + I N
Sbjct: 477 PPRFVKKLSDISTVVGEEVQLQATIEGAEPISVAWFKDKGEIVRESDNIWISYSEN 532
Score = 121 bits (306), Expect = 2e-29
Identities = 35/185 (18%), Positives = 67/185 (36%), Gaps = 10/185 (5%)
Query: 4 EGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIF---ENGNLLISPVSRDDSGIYSC 60
G +T+ C + P+ + W K+ + S K+ +L+I+ V D G Y+C
Sbjct: 19 IGEPITLQCKVDGTPEIRIAWYKEHTKLRSAPAYKMQFKNNVASLVINKVDHSDVGEYTC 78
Query: 61 TATNVHGMDESKGRLIV--LHGPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWT 118
A N G S L++ P + + + + C + E L V W
Sbjct: 79 KAENSVGAVASSAVLVIKERKLPPSFARKLKDVHETLGFPVAFECRINGSEPLQV--SWY 136
Query: 119 HNGVRIGNMDLNELETPNINIDGGLLEITNASFADAGEYECVVKSTVGKISTKTTVIVEG 178
+G + + + + L+I + G+Y C + +G S+ + +
Sbjct: 137 KDGELL---KDDANLQTSFIHNVATLQILQTDQSHVGQYNCSASNPLGTASSSAKLTLSE 193
Query: 179 PPGLP 183
P
Sbjct: 194 HEVPP 198
Score = 75.6 bits (186), Expect = 2e-14
Identities = 21/79 (26%), Positives = 27/79 (34%), Gaps = 4/79 (5%)
Query: 4 EGGNVTIFCNPEAAPKPKFVWKKDGN-IIGSGGRRKIFENGN---LLISPVSRDDSGIYS 59
G V + E A W KD I+ I + N L S ++G Y+
Sbjct: 491 VGEEVQLQATIEGAEPISVAWFKDKGEIVRESDNIWISYSENIATLQFSRAEPANAGKYT 550
Query: 60 CTATNVHGMDESKGRLIVL 78
C N G E L VL
Sbjct: 551 CQIKNEAGTQECFATLSVL 569
>2ee2_A Contactin-1; neural cell surface protein F3, glycoprotein GP135,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 119
Score = 132 bits (333), Expect = 1e-36
Identities = 38/127 (29%), Positives = 59/127 (46%), Gaps = 8/127 (6%)
Query: 373 GPGPESEVVTIFSAEDMPQVAPQGVFSRGFNSTAINVTWNPIELIRENIRGRLIGHRIKY 432
G S V I SA+D P AP V + +S+ I+V W + + ++I+Y
Sbjct: 1 GSSGSSGVAVINSAQDAPSEAPTEVGVKVLSSSEISVHWEHVL------EKIVESYQIRY 54
Query: 433 WKEDNPEETAVYYLSRTTRNWALIVGLQPDTKYYVKVMAYNNAGEGPESERYLERTYRKA 492
W + EE A + A + L PDT+Y+++V A N+AG GP S+ T + +
Sbjct: 55 WAAHDKEEAANRVQVTSQEYSARLENLLPDTQYFIEVGACNSAGCGPPSDMIEAFTKKAS 114
Query: 493 PQKPPSA 499
P S
Sbjct: 115 G--PSSG 119
Score = 83.2 bits (206), Expect = 2e-19
Identities = 24/110 (21%), Positives = 47/110 (42%), Gaps = 5/110 (4%)
Query: 476 GEGPESERYLERTYRKAPQKPPSAVHIKGINPTTVHVTWRYVSPSFEEEPIIGYKVRVWE 535
G S + + + AP + P+ V +K ++ + + V W +V + + Y++R W
Sbjct: 1 GSSGSSGVAVINSAQDAPSEAPTEVGVKVLSSSEISVHWEHVLE----KIVESYQIRYWA 56
Query: 536 VDQDMSRANDTIIPVGNTLDADIVDLSPGKRYHMRVLAFSNGGDGRMSSP 585
D A + + A + +L P +Y + V A ++ G G S
Sbjct: 57 AH-DKEEAANRVQVTSQEYSARLENLLPDTQYFIEVGACNSAGCGPPSDM 105
Score = 65.5 bits (160), Expect = 3e-13
Identities = 26/124 (20%), Positives = 51/124 (41%), Gaps = 11/124 (8%)
Query: 269 GYGEPSSPSPQYNTPADKPYQAPSRIGGGGGKIGDLSISWEPLPREKQNAPNIYYKIFWR 328
G S + + D P +AP+ +G ++S+ WE + Y+I +
Sbjct: 1 GSSGSSGVAVIN-SAQDAPSEAPTEVGVKVLSSSEISVHWEHVL----EKIVESYQIRYW 55
Query: 329 KKNDTEFQSETLKEYGNVGIAVVR--IPSEFYYTEYEVKVQAINDVGPGPESEVVTIFSA 386
+D E + ++ A + +P T+Y ++V A N G GP S+++ F+
Sbjct: 56 AAHDKEEAANRVQVTSQEYSARLENLLP----DTQYFIEVGACNSAGCGPPSDMIEAFTK 111
Query: 387 EDMP 390
+
Sbjct: 112 KASG 115
Score = 44.3 bits (105), Expect = 8e-06
Identities = 22/98 (22%), Positives = 34/98 (34%), Gaps = 10/98 (10%)
Query: 179 PPGLPGGVQVVEVHKTSATIQWTDGATNGRPITHYKIIARTNWNSTWFNVSEHVIGKEVD 238
P P V V + + ++ W + Y+I W + V
Sbjct: 18 PSEAPTEVGVKVLSSSEISVHWEHVL-EKI-VESYQI-------RYWAAHDKEEAANRVQ 68
Query: 239 RYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSP 276
+ A +EN L+P + Y +V A N G G PS
Sbjct: 69 VTSQEYSARLEN-LLPDTQYFIEVGACNSAGCGPPSDM 105
>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30,
N-terminal eight IG domains...; immunoglobulin domain;
HET: NAG NDG; 4.19A {Drosophila melanogaster}
Length = 816
Score = 144 bits (364), Expect = 3e-36
Identities = 56/287 (19%), Positives = 93/287 (32%), Gaps = 35/287 (12%)
Query: 4 EGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFE--------NGNLLISPVSRDDS 55
G +V + C P P+ W+ DG I + R ++ + L I+ V +D
Sbjct: 443 PGPSVFLKCVAGGNPTPEISWELDGKKIANNDRYQVGQYVTVNGDVVSYLNITSVHANDG 502
Query: 56 GIYSCTATNVHGMDESKGRLIVLHGPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAY 115
G+Y C A + G+ E +L V P Y + K I A L + C + +
Sbjct: 503 GLYKCIAKSKVGVAEHSAKLNVYGLP--YIRQMEKKAIVAGETLIVTCPVAGYPIDSI-- 558
Query: 116 IWTHNGVRIGNMDLNELETPNINI-DGGLLEITNASFA-DAGEYECVVKSTVGKISTKT- 172
+W + + + G L I N D Y CV K+ G + +
Sbjct: 559 VWERDNRAL-------PINRKQKVFPNGTLIIENVERNSDQATYTCVAKNQEGYSARGSL 611
Query: 173 TVIVEGPPGL--PGGVQVVEVHKTSATIQWT-DGATNGRPITHYKIIARTNWNSTWFNVS 229
V V P + + T+ + G I + +
Sbjct: 612 EVQVMVLPRIIPFAFEEGPAQVGQYLTLHCSVPGGDLPLNIDWTL-------DGQAISED 664
Query: 230 EHVIGKEVDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSP 276
+ V R +IE V F A N G+ + ++P
Sbjct: 665 LGITTSRVGRRGS--VLTIEAV-EASHAGNFTCHARNLAGHQQFTTP 708
Score = 136 bits (345), Expect = 6e-34
Identities = 35/183 (19%), Positives = 60/183 (32%), Gaps = 9/183 (4%)
Query: 4 EGGNVTIFCNPEAAPKP-KFVWKKDGNIIGSGGRRKI----FENGNLLISPVSRDDSGIY 58
G +T+ C+ P W DG I L I V +G +
Sbjct: 633 VGQYLTLHCSVPGGDLPLNIDWTLDGQAISEDLGITTSRVGRRGSVLTIEAVEASHAGNF 692
Query: 59 SCTATNVHGMDESKGRLIVLHGPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWT 118
+C A N+ G + L V P + + P A + ++ C A V W
Sbjct: 693 TCHARNLAGHQQFTTPLNVYVPPRWILE-PTDKAFAQGSDAKVECKADGFPKPQV--TWK 749
Query: 119 HNGVRIGNMDLNELETPNINIDGGLLEITNASFADAGEYECVVKSTVGKISTKTT-VIVE 177
+ ++ NI ++ G L + N + G Y C + +G + + V+
Sbjct: 750 KAVGDTPGEYKDLKKSDNIRVEEGTLHVDNIQKTNEGYYLCEAINGIGSGLSAVIMISVQ 809
Query: 178 GPP 180
Sbjct: 810 AHH 812
Score = 132 bits (334), Expect = 2e-32
Identities = 45/213 (21%), Positives = 74/213 (34%), Gaps = 18/213 (8%)
Query: 4 EGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGNLLISPVSRD-DSGIYSCTA 62
G + + C P VW++D + ++K+F NG L+I V R+ D Y+C A
Sbjct: 540 AGETLIVTCPVAGYPIDSIVWERDNRALPINRKQKVFPNGTLIIENVERNSDQATYTCVA 599
Query: 63 TNVHGMDESK-GRLIVLHGPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNG 121
N G + V+ P + + L L CS + L + WT +G
Sbjct: 600 KNQEGYSARGSLEVQVMVLPRIIPFAFEEGPAQVGQYLTLHCSVPGGD-LPLNIDWTLDG 658
Query: 122 VRIGNMDLNELETPNINIDGGLLEITNASFADAGEYECVVKSTVGKISTKTTVIVEGPP- 180
I + + T + G +L I + AG + C ++ G T + V PP
Sbjct: 659 QAI--SEDLGITTSRVGRRGSVLTIEAVEASHAGNFTCHARNLAGHQQFTTPLNVYVPPR 716
Query: 181 --GLPGGVQVVE----------VHKTSATIQWT 201
P + + W
Sbjct: 717 WILEPTDKAFAQGSDAKVECKADGFPKPQVTWK 749
Score = 121 bits (305), Expect = 7e-29
Identities = 50/226 (22%), Positives = 75/226 (33%), Gaps = 28/226 (12%)
Query: 2 AGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCT 61
G C P W KDG IG L I V ++D G+Y C
Sbjct: 355 VDFGRPAVFTCQYTGNPIKTVSWMKDGKAIGHS-------ESVLRIESVKKEDKGMYQCF 407
Query: 62 ATNVHGMDESKGRLIVL--HGPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTH 119
N E+ L + P Q + T+ ++ L+C A ++ W
Sbjct: 408 VRNDRESAEASAELKLGGRFDPPVIRQAFQEETMEPGPSVFLKCVAGGNPTPEI--SWEL 465
Query: 120 NGVRIGNMD-LNELETPNINIDG-GLLEITNASFADAGEYECVVKSTVGKISTKTTVIVE 177
+G +I N D + +N D L IT+ D G Y+C+ KS VG + V
Sbjct: 466 DGKKIANNDRYQVGQYVTVNGDVVSYLNITSVHANDGGLYKCIAKSKVGVAEHSAKLNVY 525
Query: 178 GPPGL--PGGVQVVE----------VHKTSATIQWTDGATNGRPIT 211
G P + +V +I W + R +
Sbjct: 526 GLPYIRQMEKKAIVAGETLIVTCPVAGYPIDSIVWE---RDNRALP 568
Score = 116 bits (292), Expect = 3e-27
Identities = 41/241 (17%), Positives = 65/241 (26%), Gaps = 38/241 (15%)
Query: 4 EGGNVTIFCNPEAA---PKPKFVWKKDGNIIG-----SGGRRKIFENGNLLISPVSR-DD 54
G + I C + W D G+ + +G L I V D
Sbjct: 152 RGNSAVIKCLIPSFVADFVEVVSWHTDEEENYFPGAEYDGKYLVLPSGELHIREVGPEDG 211
Query: 55 SGIYSCTATNVHGMDESKGRLIVL--HGPSYYEQLPPKI--------TIAAHRNLQLRCS 104
Y C + + +P + T + + L C
Sbjct: 212 YKSYQCRTKHRLTGETRLSATKGRLVITEPISSAVPKVVSLAKFDMKTYSGSSTMALLCP 271
Query: 105 AHTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEITNASFADAGEYECVVKST 164
A + W + + G L I +A D+G+Y CVV ++
Sbjct: 272 AQGYPVPVF--RWYKFIEGT-TRKQAVVLNDRVKQVSGTLIIKDAVVEDSGKYLCVVNNS 328
Query: 165 VGKISTKTTVIVEGPPGLPGGVQVVEVHKTS-------------ATIQWTDGATNGRPIT 211
VG S +T + V P V T+ W +G+ I
Sbjct: 329 VGGESVETVLTVTAPLSAKIDPPTQTVDFGRPAVFTCQYTGNPIKTVSWM---KDGKAIG 385
Query: 212 H 212
H
Sbjct: 386 H 386
Score = 100 bits (249), Expect = 4e-22
Identities = 41/206 (19%), Positives = 71/206 (34%), Gaps = 16/206 (7%)
Query: 4 EGGNVTIFCNPEAAPKPKFVW-KKDGNIIGSG-GRRKIFENGNLLISPVSRDD------S 55
I C P P+ +W + DG +G G R+I +G L+ P +D +
Sbjct: 53 NSTGAEIECKASGNPMPEIIWIRSDGTAVGDVPGLRQISSDGKLVFPPFRAEDYRQEVHA 112
Query: 56 GIYSCTATNVHGMDESKGRLIVLHGPSYYEQLPPKITIAAHRNLQLRCSA--HTEELLDV 113
+Y+C A N G S+ + YYE K + + ++C + ++V
Sbjct: 113 QVYACLARNQFGSIISRDVHVRAVVAQYYEADVNKEHVIRGNSAVIKCLIPSFVADFVEV 172
Query: 114 AYIWTHNGVRIGNMDLNELETPNINIDGGLLEITNASFADA-GEYECVVKSTVG---KIS 169
W + + + G L I D Y+C K + ++S
Sbjct: 173 -VSWHTDEEENYFPGAEYDGKYLV-LPSGELHIREVGPEDGYKSYQCRTKHRLTGETRLS 230
Query: 170 TKTTVIVEGPPGLPGGVQVVEVHKTS 195
+V P +VV + K
Sbjct: 231 ATKGRLVITEPISSAVPKVVSLAKFD 256
Score = 79.2 bits (195), Expect = 2e-15
Identities = 19/88 (21%), Positives = 32/88 (36%), Gaps = 6/88 (6%)
Query: 4 EGGNVTIFCNPEAAPKPKFVWKKDGNII------GSGGRRKIFENGNLLISPVSRDDSGI 57
+G + + C + PKP+ WKK E G L + + + + G
Sbjct: 728 QGSDAKVECKADGFPKPQVTWKKAVGDTPGEYKDLKKSDNIRVEEGTLHVDNIQKTNEGY 787
Query: 58 YSCTATNVHGMDESKGRLIVLHGPSYYE 85
Y C A N G S +I + ++
Sbjct: 788 YLCEAINGIGSGLSAVIMISVQAHHHHH 815
Score = 76.9 bits (189), Expect = 8e-15
Identities = 31/265 (11%), Positives = 64/265 (24%), Gaps = 31/265 (11%)
Query: 45 LLISPVSRDDSGIYSCTATNVHGMDE--SKGRLIVLHGPSYYEQLPPKITIAAHRNLQLR 102
+ + +++ A G + GP + ++ +I + ++
Sbjct: 1 MNMPNERLKWLMLFAAVALIACGSQTLAANPPDADQKGPVFLKEPTNRIDFSNSTGAEIE 60
Query: 103 CSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEITNAS------FADAGE 156
C A IW + + ++ G L A
Sbjct: 61 CKASGNP--MPEIIWIRS----DGTAVGDVPGLRQISSDGKLVFPPFRAEDYRQEVHAQV 114
Query: 157 YECVVKSTVGKI-STKTTVIVEGPPGLPGGVQVVEVHK-TSATIQWTDGATNGRPITHYK 214
Y C+ ++ G I S V V V + SA I+ + +
Sbjct: 115 YACLARNQFGSIISRDVHVRAVVAQYYEADVNKEHVIRGNSAVIKCLIPSFVADFVEVV- 173
Query: 215 IIARTNWNSTWFNVSEHVIGKEV---DRYTGRKEAS--IENVLVPWSTYEFKVIAGNELG 269
+W E +Y I V ++ + L
Sbjct: 174 ---------SWHTDEEENYFPGAEYDGKYLVLPSGELHIREVGPEDGYKSYQCRTKHRLT 224
Query: 270 YGEPSSPSPQYNTPADKPYQAPSRI 294
S + + A ++
Sbjct: 225 GETRLSATKGRLVITEPISSAVPKV 249
>2rik_A Titin; I-SET IG fold, poly-IG linear array, structural protein;
1.60A {Oryctolagus cuniculus} PDB: 2rjm_A
Length = 284
Score = 135 bits (342), Expect = 7e-36
Identities = 53/241 (21%), Positives = 91/241 (37%), Gaps = 27/241 (11%)
Query: 2 AGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFE---NGNLLISPVSRDDSGIY 58
G + T C+ K W KD I GG K+ L + V++ D+G Y
Sbjct: 17 LALGESGTFKCHVTGTAPIKITWAKDNREIRPGGNYKMTLVENTATLTVLKVTKGDAGQY 76
Query: 59 SCTATNVHGMDESKGRLIVLHGPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWT 118
+C A+NV G D +L V P + ++L P + + + C + V +W
Sbjct: 77 TCYASNVAGKDSCSAQLGVQEPPRFIKKLEPSRIVKQDEHTRYECKIGGSPEIKV--LWY 134
Query: 119 HNGVRIGNMDLNELETPNINIDGGLLEITNASFADAGEYECVVKSTVGKISTKTTVIVEG 178
+ I + + +LE+ N S D+G+Y C + G S+ T++ V+
Sbjct: 135 KDETEI---QESSKFRMSFVESVAVLEMYNLSVEDSGDYTCEAHNAAGSASSSTSLKVKE 191
Query: 179 PPGL---PGGVQVVE----------VHKTSATIQWTDGATNGRPIT---HYKIIARTNWN 222
PP P V+ ++ + W + R + YKI++
Sbjct: 192 PPVFRKKPHPVETLKGADVHLECELQGTPPFQVSWH---KDKRELRSGKKYKIMSENFLT 248
Query: 223 S 223
S
Sbjct: 249 S 249
Score = 127 bits (321), Expect = 4e-33
Identities = 38/184 (20%), Positives = 67/184 (36%), Gaps = 17/184 (9%)
Query: 2 AGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIF---ENGNLLISPVSRDDSGIY 58
+ + C +P+ K +W KD I + ++ L + +S +DSG Y
Sbjct: 111 VKQDEHTRYECKIGGSPEIKVLWYKDETEIQESSKFRMSFVESVAVLEMYNLSVEDSGDY 170
Query: 59 SCTATNVHGMDESKGRLIVLHGPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWT 118
+C A N G S L V P + ++ P + ++ L C V W
Sbjct: 171 TCEAHNAAGSASSSTSLKVKEPPVFRKK-PHPVETLKGADVHLECELQGTPPFQV--SWH 227
Query: 119 HNGVRIGNMDLNELETPNINI--DGGL--LEITNASFADAGEYECVVKSTVGKISTKTTV 174
+ + I + L + I N AD GEY+C + VG + ++
Sbjct: 228 KDKREL-------RSGKKYKIMSENFLTSIHILNVDSADIGEYQCKASNDVGSYTCVGSI 280
Query: 175 IVEG 178
++
Sbjct: 281 TLKA 284
Score = 87.1 bits (216), Expect = 4e-19
Identities = 21/80 (26%), Positives = 32/80 (40%), Gaps = 3/80 (3%)
Query: 1 YAGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGN---LLISPVSRDDSGI 57
+G +V + C + P + W KD + SG + KI + I V D G
Sbjct: 203 ETLKGADVHLECELQGTPPFQVSWHKDKRELRSGKKYKIMSENFLTSIHILNVDSADIGE 262
Query: 58 YSCTATNVHGMDESKGRLIV 77
Y C A+N G G + +
Sbjct: 263 YQCKASNDVGSYTCVGSITL 282
>3r8q_A Fibronectin; heparin, FNIII, heparin binding, cell adhesion; 2.40A
{Homo sapiens} PDB: 1fnh_A
Length = 290
Score = 134 bits (339), Expect = 1e-35
Identities = 60/320 (18%), Positives = 107/320 (33%), Gaps = 43/320 (13%)
Query: 166 GKISTKTTVIVEGPPGL-PGGVQVVEVHKTSATIQWTDGATNGRPITHYKIIARTNWNST 224
S+ V+ +GP P ++ +V TS + QWT N +T Y++ +
Sbjct: 6 HHHSSGLEVLFQGPAIPAPTDLKFTQVTPTSLSAQWTPP--NV-QLTGYRVRVTPKEKTG 62
Query: 225 WFNVSEHVIGKEVDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPSPQYNTPA 284
KE++ + L+ + YE V A + P+
Sbjct: 63 PM--------KEINLAPDSSSVVVSG-LMVATKYEVSVYALKDTLTSRPAQGVVTTLENV 113
Query: 285 DKPYQAPSRIGGGGGKIGDLSISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETLKEYG 344
P R ++ISW + +++ N T+K
Sbjct: 114 S----PPRRARVTDATETTITISWRT-----KTETITGFQVDAVPANGQTPIQRTIK--P 162
Query: 345 NVGIAVVR--IPSEFYYTEYEVKVQAINDVGPGPESEVVTIFSAEDMPQVAPQGVFSRGF 402
+V + P T+Y++ + +ND + + + AP +
Sbjct: 163 DVRSYTITGLQP----GTDYKIYLYTLNDNARSSPVVIDA---STAID--APSNLRFLAT 213
Query: 403 NSTAINVTWNPIELIRENIRGRLIGHRIKYWKEDNPEETAVYYLSRTTRNWALIVGLQPD 462
++ V+W P R R+ G+ IKY K +P V A I GL+P
Sbjct: 214 TPNSLLVSWQPP-------RARITGYIIKYEKPGSPPREVVPRPRPGVTE-ATITGLEPG 265
Query: 463 TKYYVKVMAYNNAGEGPESE 482
T+Y + V+A N +
Sbjct: 266 TEYTIYVIALKNNQKSEPLI 285
Score = 121 bits (305), Expect = 6e-31
Identities = 51/279 (18%), Positives = 82/279 (29%), Gaps = 36/279 (12%)
Query: 304 LSISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETLKEYGNVGIAVVR--IPSEFYYTE 361
LS W P P N Y++ K T + + + VV + T+
Sbjct: 37 LSAQWTP-P----NVQLTGYRVRVTPKEKTG-PMKEINLAPDSSSVVVSGLMV----ATK 86
Query: 362 YEVKVQAINDVGPGPESEVVTIFSAEDMPQVAPQGVFSRGFNSTAINVTWNPIELIRENI 421
YEV V A+ D ++ V P+ T I ++W
Sbjct: 87 YEVSVYALKDTLTSRPAQGVVTTLENV---SPPRRARVTDATETTITISWRTKT------ 137
Query: 422 RGRLIGHRIKYWKEDNPEETAVYYLSRTTRNWALIVGLQPDTKYYVKVMAYNNAGEGPES 481
+ G ++ + I GLQP T Y + + N+
Sbjct: 138 -ETITGFQVDAVPANGQTPIQRTIKPDVRS--YTITGLQPGTDYKIYLYTLNDNARSSPV 194
Query: 482 ERYLERTYRKAPQKPPSAVHIKGINPTTVHVTWRYVSPSFEEEPIIGYKVRVWEVDQDMS 541
PS + P ++ V+W+ P I GY ++ +
Sbjct: 195 V-----IDASTAIDAPSNLRFLATTPNSLLVSWQ--PP---RARITGYIIKYEKPGSPPR 244
Query: 542 RANDTIIPVGNTLDADIVDLSPGKRYHMRVLAFSNGGDG 580
P +A I L PG Y + V+A N
Sbjct: 245 EV--VPRPRPGVTEATITGLEPGTEYTIYVIALKNNQKS 281
Score = 104 bits (261), Expect = 5e-25
Identities = 36/217 (16%), Positives = 72/217 (33%), Gaps = 23/217 (10%)
Query: 375 GPESEVVTIFSAEDMPQVAPQGVFSRGFNSTAINVTWNPIELIRENIRGRLIGHRIKYWK 434
S + + + AP + T+++ W P +L G+R++
Sbjct: 6 HHHSSGLEV-LFQGPAIPAPTDLKFTQVTPTSLSAQWTPPN-------VQLTGYRVRVTP 57
Query: 435 EDNPEETAVYYLSRTTRNWALIVGLQPDTKYYVKVMAYNNAGEGPESERYLERTYRKAPQ 494
++ L+ + + ++ GL TKY V V A + ++
Sbjct: 58 KEKTGPMKEINLAPDSSS-VVVSGLMVATKYEVSVYALKDTLTSRPAQ---GVVTTLENV 113
Query: 495 KPPSAVHIKGINPTTVHVTWRYVSPSFEEEPIIGYKVRVWEVDQDMSRANDTIIPVGNTL 554
PP + TT+ ++WR + + E I G++V + +
Sbjct: 114 SPPRRARVTDATETTITISWR--TKT---ETITGFQVDAVPANGQTPIQRTI---KPDVR 165
Query: 555 DADIVDLSPGKRYHMRVLAFSNGGDGRMSSPAITFQM 591
I L PG Y + + ++ SSP +
Sbjct: 166 SYTITGLQPGTDYKIYLYTLNDNAR---SSPVVIDAS 199
Score = 76.4 bits (188), Expect = 2e-15
Identities = 44/229 (19%), Positives = 71/229 (31%), Gaps = 32/229 (13%)
Query: 156 EYECVVKST----VGKISTKTTVIVEGPPGLPGGVQVVEVHKTSATIQWTDGATNGRPIT 211
+YE V + + + +E P +V + +T+ TI W IT
Sbjct: 86 KYEVSVYALKDTLTSRPAQGVVTTLENVSP-PRRARVTDATETTITISWR--TKTE-TIT 141
Query: 212 HYKIIARTNWNSTWFNVSEHVIGKEVDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYG 271
+++ A T + I +V YT I L P + Y+ + N+
Sbjct: 142 GFQVDAVPANGQTPI---QRTIKPDVRSYT------ITG-LQPGTDYKIYLYTLNDNARS 191
Query: 272 EPSSPSPQYNTPADKPYQAPSRIGGGGGKIGDLSISWEPLPREKQNAPNIYYKIFWRKKN 331
P T D APS + L +SW+P A Y I + K
Sbjct: 192 SPVVIDAS--TAID----APSNLRFLATTPNSLLVSWQPP-----RARITGYIIKYEKPG 240
Query: 332 DTEFQSETLKEYGNVGIAVVRIPSEFYYTEYEVKVQAINDVGPGPESEV 380
+ G+ I TEY + V A+ +
Sbjct: 241 SPP---REVVPRPRPGVTEATITGLEPGTEYTIYVIALKNNQKSEPLIG 286
>3lpw_A A77-A78 domain from titin; intracellular FNIII-tandem, structural
protein; 1.65A {Homo sapiens}
Length = 197
Score = 131 bits (331), Expect = 2e-35
Identities = 44/218 (20%), Positives = 80/218 (36%), Gaps = 33/218 (15%)
Query: 179 PPGLPGGVQVVEVHKTSATIQWTDGA-TNGRPITHYKIIARTNWNSTWFNVSEHVIGKEV 237
PG P ++V EV KTS T+ W G I +Y + R + + V+ +
Sbjct: 5 TPGPPQDLKVKEVTKTSVTLTWDPPLLDGGSKIKNYIVEKRESTRKAYSTVATNC----- 59
Query: 238 DRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPSPQYNTPADKPYQAPSRIGGG 297
+ ++ L +Y F+V+A NE G G P+ + +++P P +I
Sbjct: 60 ----HKTSWKVDQ-LQEGCSYYFRVLAENEYGIGLPAETAESV-KASERP-LPPGKITLM 112
Query: 298 GGKIGDLSISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETLKEYGNVGIAVVRIPSEF 357
+S+SWE P + + Y + + K ++ + +
Sbjct: 113 DVTRNSVSLSWEK-PEHDGGSRILGYIVEMQTKGSDKWAT------------CATVKVTE 159
Query: 358 Y-------YTEYEVKVQAINDVGPGPESEVVTIFSAED 388
EY +V A N+ G ++ A+D
Sbjct: 160 ATITGLIQGEEYSFRVSAQNEKGISDPRQLSVPVIAKD 197
Score = 95.9 bits (239), Expect = 6e-23
Identities = 30/181 (16%), Positives = 63/181 (34%), Gaps = 16/181 (8%)
Query: 304 LSISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETLKEYGNVGIAVVR--IPSEFYYTE 361
++++W+P P + Y + R+ + T+ + V
Sbjct: 22 VTLTWDP-PLLDGGSKIKNYIVEKRESTRKAYS--TVATNCHKTSWKVDQLQE----GCS 74
Query: 362 YEVKVQAINDVGPGPESEVVTIFSAEDMPQVAPQGVFSRGFNSTAINVTWNPIELIRENI 421
Y +V A N+ G G +E A + P P + +++++W E +
Sbjct: 75 YYFRVLAENEYGIGLPAETAESVKASERPL-PPGKITLMDVTRNSVSLSWEKPE---HDG 130
Query: 422 RGRLIGHRIKYWKEDNPEETAVYYLSRTTRNWALIVGLQPDTKYYVKVMAYNNAGEGPES 481
R++G+ ++ + + + A I GL +Y +V A N G
Sbjct: 131 GSRILGYIVEMQTKGSDKWATCA---TVKVTEATITGLIQGEEYSFRVSAQNEKGISDPR 187
Query: 482 E 482
+
Sbjct: 188 Q 188
Score = 88.2 bits (219), Expect = 3e-20
Identities = 41/201 (20%), Positives = 72/201 (35%), Gaps = 14/201 (6%)
Query: 386 AEDMPQVAPQGVFSRGFNSTAINVTWNPIELIRENIRGRLIGHRIKYWKEDNPEETAVYY 445
A D P PQ + + T++ +TW+P + ++ + ++ + + V
Sbjct: 2 AMDTPG-PPQDLKVKEVTKTSVTLTWDPPL---LDGGSKIKNYIVEKRESTRKAYSTVAT 57
Query: 446 LSRTTRNWALIVGLQPDTKYYVKVMAYNNAGEGPESERYLERTYRKAPQKPPSAVHIKGI 505
T + LQ YY +V+A N G G +E + P PP + + +
Sbjct: 58 NCHKTS--WKVDQLQEGCSYYFRVLAENEYGIGLPAETAESVKASERPL-PPGKITLMDV 114
Query: 506 NPTTVHVTWRYVSPSFEE-EPIIGYKVRVWEVDQDMSRANDTIIPVGNTLDADIVDLSPG 564
+V ++W P + I+GY V + D +A I L G
Sbjct: 115 TRNSVSLSWE--KPEHDGGSRILGYIVEMQTKGSDKW----ATCATVKVTEATITGLIQG 168
Query: 565 KRYHMRVLAFSNGGDGRMSSP 585
+ Y RV A + G
Sbjct: 169 EEYSFRVSAQNEKGISDPRQL 189
Score = 69.3 bits (170), Expect = 8e-14
Identities = 25/107 (23%), Positives = 41/107 (38%), Gaps = 12/107 (11%)
Query: 172 TTVIVEGPPGLPGGVQVVEVHKTSATIQWTD-GATNGRPITHYKIIARTNWNSTWFNVSE 230
+V P PG + +++V + S ++ W G I Y + +T + W +
Sbjct: 95 ESVKASERPLPPGKITLMDVTRNSVSLSWEKPEHDGGSRILGYIVEMQTKGSDKWATCAT 154
Query: 231 HVIGKEVDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPS 277
+V T I L+ Y F+V A NE G +P S
Sbjct: 155 V----KVTEAT------ITG-LIQGEEYSFRVSAQNEKGISDPRQLS 190
Score = 57.0 bits (138), Expect = 2e-09
Identities = 25/101 (24%), Positives = 40/101 (39%), Gaps = 8/101 (7%)
Query: 492 APQKP--PSAVHIKGINPTTVHVTWRYVSPSFEE-EPIIGYKVRVWEVDQDMSRANDTII 548
A P P + +K + T+V +TW P + I Y V E + +A T+
Sbjct: 2 AMDTPGPPQDLKVKEVTKTSVTLTWD--PPLLDGGSKIKNYIV---EKRESTRKAYSTVA 56
Query: 549 PVGNTLDADIVDLSPGKRYHMRVLAFSNGGDGRMSSPAITF 589
+ + L G Y+ RVLA + G G + A +
Sbjct: 57 TNCHKTSWKVDQLQEGCSYYFRVLAENEYGIGLPAETAESV 97
>2va4_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; transmembrane,
phosphorylation, immunoglobulin domain, membrane,
glycoprotein; HET: NAG; 1.9A {Homo sapiens} PDB: 2xy1_A*
Length = 192
Score = 128 bits (322), Expect = 3e-34
Identities = 40/181 (22%), Positives = 68/181 (37%), Gaps = 9/181 (4%)
Query: 2 AGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFE-NGNLLISPVSRDDSGIYSC 60
A G +T C +P+P W ++G +I + + N L + + D G Y C
Sbjct: 16 AERGEEMTFSCRASGSPEPAISWFRNGKLIEENEKYILKGSNTELTVRNIINSDGGPYVC 75
Query: 61 TATNVHGMDESKGRLIVLHGPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHN 120
ATN G DE + L V P + T + + L C A E + ++ W
Sbjct: 76 RATNKAGEDEKQAFLQVFVQPHIIQ--LKNETTYENGQVTLVCDAEGEPIPEI--TWKRA 131
Query: 121 GVRIGNMDLNELETPNINI----DGGLLEITNASFADAGEYECVVKSTVGKISTKTTVIV 176
+ ++ I + L I + +D+G Y+C S +G + +
Sbjct: 132 VDGFTFTEGDKSLDGRIEVKGQHGSSSLHIKDVKLSDSGRYDCEAASRIGGHQKSMYLDI 191
Query: 177 E 177
E
Sbjct: 192 E 192
Score = 56.0 bits (135), Expect = 3e-09
Identities = 19/102 (18%), Positives = 27/102 (26%), Gaps = 17/102 (16%)
Query: 84 YEQLPPKITIAAHRNLQLRCSAH-----TEELLDVAYIWTHNGVRIGNMDLNELETPNIN 138
Q T + C A W NG I E E +
Sbjct: 7 MPQKSFNATAERGEEMTFSCRASGSPEPA-------ISWFRNGKLI-----EENEKYILK 54
Query: 139 IDGGLLEITNASFADAGEYECVVKSTVGKISTKTTVIVEGPP 180
L + N +D G Y C + G+ + + V P
Sbjct: 55 GSNTELTVRNIINSDGGPYVCRATNKAGEDEKQAFLQVFVQP 96
>1uen_A KIAA0343 protein; immunoglobulin-like beta-sandwich fold,
fibronectin type III, NG-CAM related cell adhesion
molecule, structural genomics; NMR {Homo sapiens} SCOP:
b.1.2.1
Length = 125
Score = 124 bits (312), Expect = 1e-33
Identities = 39/128 (30%), Positives = 60/128 (46%), Gaps = 11/128 (8%)
Query: 378 SEVVTIFSAEDMPQVAPQGVFSRGFNSTAINVTWNPIELIRENIRGRLIGHRIKYWKEDN 437
S + S ED+P VAP V NST V W+P+ ++IRG L G+RI YWK +
Sbjct: 2 SSGSSGHSGEDLPMVAPGNVRVNVVNSTLAEVHWDPVP--LKSIRGHLQGYRIYYWKTQS 59
Query: 438 PEETAVYYLSR------TTRNWALIVGLQPDTKYYVKVMAYNNAGEGPESERYLERTYRK 491
+ ++ + ++ ++ GL+P + Y + V N GEGP S + T
Sbjct: 60 SSKRNRRHIEKKILTFQGSKTHGMLPGLEPFSHYTLNVRVVNGKGEGPASPDRVFNT--- 116
Query: 492 APQKPPSA 499
PS+
Sbjct: 117 PEGSGPSS 124
Score = 80.1 bits (198), Expect = 3e-18
Identities = 24/120 (20%), Positives = 36/120 (30%), Gaps = 6/120 (5%)
Query: 481 SERYLERTYRKAPQKPPSAVHIKGINPTTVHVTWRYVSPSFEEEPIIGYKVRVWEVDQDM 540
S + P P V + +N T V W V + GY++ W+
Sbjct: 2 SSGSSGHSGEDLPMVAPGNVRVNVVNSTLAEVHWDPVPLKSIRGHLQGYRIYYWKTQSSS 61
Query: 541 SRANDTIIPV-----GNTLDADIVDLSPGKRYHMRVLAFSNGGDGRMSSPAITFQMGEEK 595
R I G+ + L P Y + V + G+G S F E
Sbjct: 62 KRNRRHIEKKILTFQGSKTHGMLPGLEPFSHYTLNVRVVNGKGEGPASPD-RVFNTPEGS 120
Score = 63.6 bits (155), Expect = 2e-12
Identities = 23/121 (19%), Positives = 44/121 (36%), Gaps = 5/121 (4%)
Query: 274 SSPSPQYNTPADKPYQAPSRIGGGGGKIGDLSISWEPLPREKQNAPNIYYKIFWRKKNDT 333
SS S + + D P AP + + W+P+P + Y+I++ K +
Sbjct: 2 SSGSSGH-SGEDLPMVAPGNVRVNVVNSTLAEVHWDPVPLKSIRGHLQGYRIYYWKTQSS 60
Query: 334 EFQSETLKEYGNVGIAV----VRIPSEFYYTEYEVKVQAINDVGPGPESEVVTIFSAEDM 389
++ E + +P ++ Y + V+ +N G GP S + E
Sbjct: 61 SKRNRRHIEKKILTFQGSKTHGMLPGLEPFSHYTLNVRVVNGKGEGPASPDRVFNTPEGS 120
Query: 390 P 390
Sbjct: 121 G 121
Score = 48.2 bits (115), Expect = 4e-07
Identities = 28/112 (25%), Positives = 42/112 (37%), Gaps = 7/112 (6%)
Query: 179 PPGLPGGVQVVEVHKTSATIQWT---DGATNGRPITHYKIIARTNWNSTWFNVSEHVIGK 235
P PG V+V V+ T A + W + G + Y+I +S+ N H+ K
Sbjct: 14 PMVAPGNVRVNVVNSTLAEVHWDPVPLKSIRGH-LQGYRIYYWKTQSSSKRNR-RHIEKK 71
Query: 236 EVDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPSPQYNTPADKP 287
+ + + L P+S Y V N G G S +NTP
Sbjct: 72 ILTFQGSKTHGMLPG-LEPFSHYTLNVRVVNGKGEGPASPDR-VFNTPEGSG 121
>3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin
superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus
norvegicus}
Length = 403
Score = 131 bits (332), Expect = 2e-33
Identities = 44/181 (24%), Positives = 72/181 (39%), Gaps = 12/181 (6%)
Query: 1 YAGEGGNVTIFCNPEAAPKPKFVWKKDGNII-GSGGRRKIFENGNLLISPVSRDDSGIYS 59
A EG + + C P P F W + +I + + NLLIS V+ DDSG Y+
Sbjct: 232 IAIEGKDAVLECCVSGYPPPSFTWLRGEEVIQLRSKKYSLLGGSNLLISNVTDDDSGTYT 291
Query: 60 CTATNVHGMDESKGRLIVLHGPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTH 119
C T + + L V P ++ P + +++ C+ + + V W
Sbjct: 292 CVVTYKNENISASAELTV-LVPPWFLNHPSNLYAYESMDIEFECAVSGKPVPTV--NWMK 348
Query: 120 NGVRIGNMDLNELETPNINI-DGGLLEITNASFADAGEYECVVKSTVGKISTKTTVIVEG 178
NG + + + I G L I +D G Y+CV ++ G + +IV
Sbjct: 349 NGDVV-------IPSDYFQIVGGSNLRILGVVKSDEGFYQCVAENEAGNAQSSAQLIVPK 401
Query: 179 P 179
P
Sbjct: 402 P 402
Score = 128 bits (324), Expect = 2e-32
Identities = 49/232 (21%), Positives = 73/232 (31%), Gaps = 32/232 (13%)
Query: 2 AGEGGNVTIFCNPEAAPKPKFVWKKDGNIIG---SGGRRKIFENGNLLISPVSRDDSGIY 58
A G V + C P P W+K+ + R + +G L IS + DSG+Y
Sbjct: 133 AFMGDTVLLKCEVIGDPMPTIHWQKNQQDLNPIPGDSRVVVLPSGALQISRLQPGDSGVY 192
Query: 59 SCTATNVHGMDESKG-RLIVLHGPSYYE-----QLPPKITIAAHRNLQLRCSAHTEELLD 112
C+A N + +L P + Q P + ++ L C
Sbjct: 193 RCSARNPASTRTGNEAEVRILSDPGLHRQLYFLQRPSNVIAIEGKDAVLECCVSGYPPPS 252
Query: 113 VAYIWTHNGVRIGNMDLNELETPNINIDGGLLEITNASFADAGEYECVVKSTVGKISTKT 172
W + + G L I+N + D+G Y CVV IS
Sbjct: 253 F--TWLRGEE-----VIQLRSKKYSLLGGSNLLISNVTDDDSGTYTCVVTYKNENISASA 305
Query: 173 TVIVEGPPGL---PGGVQVVE----------VHKTSATIQWTDGATNGRPIT 211
+ V PP P + E K T+ W NG +
Sbjct: 306 ELTVLVPPWFLNHPSNLYAYESMDIEFECAVSGKPVPTVNWM---KNGDVVI 354
Score = 104 bits (262), Expect = 2e-24
Identities = 46/198 (23%), Positives = 83/198 (41%), Gaps = 17/198 (8%)
Query: 4 EGGNVTIFCNPEA-APKPKFVWKKDGNII--GSGGRRKIFENGNLLISPV-----SRDDS 55
GGNV + C+ E+ P WKKDG I+ G R++ NG+LLI + + D
Sbjct: 35 RGGNVLLNCSAESDRGVPVIKWKKDGLILALGMDDRKQQLPNGSLLIQNILHSRHHKPDE 94
Query: 56 GIYSCTAT-NVHGMDESKGRLIVLHGPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVA 114
G+Y C A+ G S+ +++ GP + IT + L+C + + +
Sbjct: 95 GLYQCEASLGDSGSIISRTAKVMVAGPLRFLSQTESITAFMGDTVLLKCEVIGDPMPTIH 154
Query: 115 YIWTHNGVRIGNMDLNELETPNINI-DGGLLEITNASFADAGEYECVVKSTVG-KISTKT 172
W N + + + + + G L+I+ D+G Y C ++ + +
Sbjct: 155 --WQKNQQDLNPIPGD----SRVVVLPSGALQISRLQPGDSGVYRCSARNPASTRTGNEA 208
Query: 173 TVIVEGPPGLPGGVQVVE 190
V + PGL + ++
Sbjct: 209 EVRILSDPGLHRQLYFLQ 226
>2dlh_A Receptor-type tyrosine-protein phosphatase delta; protein-tyrosine
phosphatase delta, R-PTP-delta, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 121
Score = 121 bits (305), Expect = 9e-33
Identities = 34/127 (26%), Positives = 50/127 (39%), Gaps = 7/127 (5%)
Query: 373 GPGPESEVVTIFSAEDMPQVAPQGVFSRGFNSTAINVTWNPIELIRENIRGRLIGHRIKY 432
G S V ++E P AP+ V +R +ST I V W E G++ G+R+ Y
Sbjct: 1 GSSGSSGPVLTQTSEQAPSSAPRDVQARMLSSTTILVQWKEPE----EPNGQIQGYRVYY 56
Query: 433 WKEDNPEETAVYYLSRTTRNWALIVGLQPDTKYYVKVMAYNNAGEGPESERYLERTYRKA 492
+ + I L P Y VKV+A+ + G+GP S T
Sbjct: 57 TMDPTQHVNNWMKHNVADSQITTIGNLVPQKTYSVKVLAFTSIGDGPLSSDIQVIT---Q 113
Query: 493 PQKPPSA 499
PS+
Sbjct: 114 TGSGPSS 120
Score = 87.1 bits (216), Expect = 1e-20
Identities = 34/110 (30%), Positives = 50/110 (45%), Gaps = 3/110 (2%)
Query: 476 GEGPESERYLERTYRKAPQKPPSAVHIKGINPTTVHVTWRYVSPSFEEEPIIGYKVRVWE 535
G S L +T +AP P V + ++ TT+ V W+ P I GY+V
Sbjct: 1 GSSGSSGPVLTQTSEQAPSSAPRDVQARMLSSTTILVQWK--EPEEPNGQIQGYRVYYTM 58
Query: 536 VDQDMSRANDTIIPVGNTLDADIVDLSPGKRYHMRVLAFSNGGDGRMSSP 585
D N V ++ I +L P K Y ++VLAF++ GDG +SS
Sbjct: 59 -DPTQHVNNWMKHNVADSQITTIGNLVPQKTYSVKVLAFTSIGDGPLSSD 107
Score = 60.1 bits (146), Expect = 2e-11
Identities = 23/124 (18%), Positives = 40/124 (32%), Gaps = 9/124 (7%)
Query: 269 GYGEPSSPSPQYNTPADKPYQAPSRIGGGGGKIGDLSISWEPLPREKQNAPNIYYKIFWR 328
G S P T P AP + + + W+ P E+ N Y++++
Sbjct: 1 GSSGSSGPVLTQ-TSEQAPSSAPRDVQARMLSSTTILVQWKE-P-EEPNGQIQGYRVYYT 57
Query: 329 KKNDTEFQSETLKEYGNVGIAVVR--IPSEFYYTEYEVKVQAINDVGPGPESEVVTIFSA 386
+ + I + +P Y VKV A +G GP S + + +
Sbjct: 58 MDPTQHVNNWMKHNVADSQITTIGNLVP----QKTYSVKVLAFTSIGDGPLSSDIQVITQ 113
Query: 387 EDMP 390
Sbjct: 114 TGSG 117
Score = 48.2 bits (115), Expect = 5e-07
Identities = 25/98 (25%), Positives = 37/98 (37%), Gaps = 8/98 (8%)
Query: 179 PPGLPGGVQVVEVHKTSATIQWTDGATNGRPITHYKIIARTNWNSTWFNVSEHVIGKEVD 238
P P VQ + T+ +QW + I Y++ + N +H +
Sbjct: 18 PSSAPRDVQARMLSSTTILVQWKEPEEPNGQIQGYRVYYTMDPTQHVNNWMKHNVADSQ- 76
Query: 239 RYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSP 276
+I N LVP TY KV+A +G G SS
Sbjct: 77 ------ITTIGN-LVPQKTYSVKVLAFTSIGDGPLSSD 107
>3mtr_A N-CAM-1, NCAM-1, neural cell adhesion molecule 1; immunoglobulin
domain, fibronectin type III repeat, CE adhesion; 1.80A
{Homo sapiens}
Length = 215
Score = 123 bits (310), Expect = 2e-32
Identities = 48/228 (21%), Positives = 87/228 (38%), Gaps = 27/228 (11%)
Query: 56 GIYSCTATNVHGMDESKGRLIVLHGPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAY 115
Y+ ++ + R ++ P Q P + + + C +
Sbjct: 1 ATYAAASSAL------VPRGSHMYAPKL--QGPVAVYTWEGNQVNITCEVFAYPSATI-- 50
Query: 116 IWTHNGVRIGNMDLNELETPNINIDGGLLEITNASFADAGEYECVVKSTVGKISTKTTVI 175
W +G + + + + ++ N LE+T S D G Y C + +G+ S + ++
Sbjct: 51 SWFRDGQLLPSSNYSNIKIYN-TPSASYLEVTPDSENDFGNYNCTAVNRIGQESLEFILV 109
Query: 176 VEGPPGLPGGVQVVEVHKTSATIQWTD-GATNGRPITHYKI----IARTNWNSTWFNVSE 230
P P VE + ++A +Q+ + AT G PI YK + W+S W++ E
Sbjct: 110 QADTPSSPSID-QVEPYSSTAQVQFDEPEATGGVPILKYKAEWRAVGEEVWHSKWYDAKE 168
Query: 231 HVIGKEVDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPSP 278
+I L P +TY ++ A N G GE S+ S
Sbjct: 169 AS---------MEGIVTIVG-LKPETTYAVRLAALNGKGLGEISAASE 206
Score = 79.1 bits (195), Expect = 6e-17
Identities = 28/87 (32%), Positives = 40/87 (45%), Gaps = 5/87 (5%)
Query: 1 YAGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGG--RRKIFENGN---LLISPVSRDDS 55
Y EG V I C A P W +DG ++ S KI+ + L ++P S +D
Sbjct: 29 YTWEGNQVNITCEVFAYPSATISWFRDGQLLPSSNYSNIKIYNTPSASYLEVTPDSENDF 88
Query: 56 GIYSCTATNVHGMDESKGRLIVLHGPS 82
G Y+CTA N G + + L+ PS
Sbjct: 89 GNYNCTAVNRIGQESLEFILVQADTPS 115
Score = 48.7 bits (116), Expect = 1e-06
Identities = 20/95 (21%), Positives = 33/95 (34%), Gaps = 5/95 (5%)
Query: 493 PQKPPSAVHIKGINPTTVHVTWRYVSPSFE-EEPIIGYKVRVWEVDQDM-SRANDTIIPV 550
PS ++ +T V + P PI+ YK V +++
Sbjct: 113 TPSSPSIDQVE-PYSSTAQVQFD--EPEATGGVPILKYKAEWRAVGEEVWHSKWYDAKEA 169
Query: 551 GNTLDADIVDLSPGKRYHMRVLAFSNGGDGRMSSP 585
IV L P Y +R+ A + G G +S+
Sbjct: 170 SMEGIVTIVGLKPETTYAVRLAALNGKGLGEISAA 204
Score = 44.8 bits (106), Expect = 3e-05
Identities = 17/78 (21%), Positives = 28/78 (35%), Gaps = 1/78 (1%)
Query: 306 ISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETLKEYGNVGIAVVRIPSEFYYTEYEVK 365
+ ++ P P + YK WR + + S+ +V I T Y V+
Sbjct: 131 VQFDE-PEATGGVPILKYKAEWRAVGEEVWHSKWYDAKEASMEGIVTIVGLKPETTYAVR 189
Query: 366 VQAINDVGPGPESEVVTI 383
+ A+N G G S
Sbjct: 190 LAALNGKGLGEISAASEF 207
Score = 43.7 bits (103), Expect = 6e-05
Identities = 28/166 (16%), Positives = 56/166 (33%), Gaps = 18/166 (10%)
Query: 324 KIFWRKKNDTEFQSET---LKEYGNVGIAVVRIPS--EFYYTEYEVKVQAINDVGPGPES 378
I W + + S +K Y + + + E + Y A+N +G
Sbjct: 49 TISWFR-DGQLLPSSNYSNIKIYNTPSASYLEVTPDSENDFGNY--NCTAVNRIGQESLE 105
Query: 379 EVVTIFSAEDMPQVAPQGVFSRGFNSTAINVTWNPIELIRENIRGRLIGHRIKYWKEDNP 438
++ P + +S V ++ E ++ ++ ++
Sbjct: 106 FILVQADTPSSPSIDQVEPYSST-----AQVQFDEPE---ATGGVPILKYKAEWRAVGEE 157
Query: 439 EETAVYY--LSRTTRNWALIVGLQPDTKYYVKVMAYNNAGEGPESE 482
+ +Y + IVGL+P+T Y V++ A N G G S
Sbjct: 158 VWHSKWYDAKEASMEGIVTIVGLKPETTYAVRLAALNGKGLGEISA 203
>2ibg_A CG9211-PA, GH03927P; IHOG, fibronectin type III, protein binding;
2.20A {Drosophila melanogaster} SCOP: b.1.2.1 b.1.2.1
PDB: 2ibb_A
Length = 214
Score = 122 bits (309), Expect = 3e-32
Identities = 30/211 (14%), Positives = 66/211 (31%), Gaps = 13/211 (6%)
Query: 180 PGLPGGVQVVEVHKTSATIQWTDGATNGRPITHYKIIART-NWNSTWFNVSEHVIGKEVD 238
P V + S ++W +G PI +K+ R W ++++ +
Sbjct: 2 TYPPTPPNVTRLSDESVMLRWMVPRNDGLPIVIFKVQYRMVGKRKNWQTTNDNIPYGKPK 61
Query: 239 RYTGRKEASIENV--LVPWSTYEFKVIAGNELGYGEPSSPSPQYNTPADKPYQ---APSR 293
+ ++ +V L P TY F+++A + S+ S ++ P
Sbjct: 62 WNSELGKSFTASVTDLKPQHTYRFRILAVYSNNDNKESNTSAKFYLQPGAALDPMPVPEL 121
Query: 294 IGGGGGKIGDLSISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETLKEYGNVGIAVVR- 352
+ + + W + Y ++R + + E + +
Sbjct: 122 LEIEEYSETAVVLHWSL-ASDADEHLITGYYAYYRPSSSAGEYFKATIEGAHARSFKIAP 180
Query: 353 -IPSEFYYTEYEVKVQAINDVGPGPESEVVT 382
T YE K+Q+ + S +
Sbjct: 181 LET----ATMYEFKLQSFSAASASEFSALKQ 207
Score = 91.0 bits (226), Expect = 5e-21
Identities = 28/191 (14%), Positives = 57/191 (29%), Gaps = 18/191 (9%)
Query: 305 SISWEPLPREKQNAPNIYYKIFWRKKNDTE-FQSETLKEYGNVGIAVVRIPSEFYY---- 359
+ W PR P + +K+ +R + +Q+ + F
Sbjct: 19 MLRWMV-PRND-GLPIVIFKVQYRMVGKRKNWQTTNDNIPYGKPKWNSELGKSFTASVTD 76
Query: 360 ----TEYEVKVQAINDVGPGPESE----VVTIFSAEDMPQVAPQGVFSRGFNSTAINVTW 411
Y ++ A+ ES A P P+ + ++ TA+ + W
Sbjct: 77 LKPQHTYRFRILAVYSNNDNKESNTSAKFYLQPGAALDPMPVPELLEIEEYSETAVVLHW 136
Query: 412 NPIELIRENIRGRLIGHRIKYWKEDNPEETAVYYLSRTTRNWALIVGLQPDTKYYVKVMA 471
+ + + G+ Y + E + I L+ T Y K+ +
Sbjct: 137 SLAS---DADEHLITGYYAYYRPSSSAGEYFKATIEGAHARSFKIAPLETATMYEFKLQS 193
Query: 472 YNNAGEGPESE 482
++ A S
Sbjct: 194 FSAASASEFSA 204
Score = 88.7 bits (220), Expect = 3e-20
Identities = 34/199 (17%), Positives = 63/199 (31%), Gaps = 21/199 (10%)
Query: 403 NSTAINVTWNPIELIRENIRGRLIGHRIKY--------WKEDN---PEETAVYYLSRTTR 451
+ ++ + W N ++ +++Y W+ N P +
Sbjct: 14 SDESVMLRWMV----PRNDGLPIVIFKVQYRMVGKRKNWQTTNDNIPYGKPKWNSELGKS 69
Query: 452 NWALIVGLQPDTKYYVKVMAYNNAGEGPESE----RYLERTYRKAPQKPPSAVHIKGINP 507
A + L+P Y +++A + + ES YL+ P P + I+ +
Sbjct: 70 FTASVTDLKPQHTYRFRILAVYSNNDNKESNTSAKFYLQPGAALDPMPVPELLEIEEYSE 129
Query: 508 TTVHVTWRYVSPSFEEEPIIGYKVRVWEVDQDMSRANDTIIPVGNTLDADIVDLSPGKRY 567
T V + W S + +E I GY TI I L Y
Sbjct: 130 TAVVLHWSLASDA-DEHLITGYYAYYRPSSSAGEYFKATIEGAHAR-SFKIAPLETATMY 187
Query: 568 HMRVLAFSNGGDGRMSSPA 586
++ +FS S+
Sbjct: 188 EFKLQSFSAASASEFSALK 206
Score = 62.5 bits (152), Expect = 2e-11
Identities = 19/116 (16%), Positives = 40/116 (34%), Gaps = 9/116 (7%)
Query: 163 STVGKISTKTTVIVEGPPGLPGGVQVVEVHKTSATIQWTDGA-TNGRPITHYKIIARTNW 221
S P +P +++ E +T+ + W+ + + IT Y R +
Sbjct: 99 SNTSAKFYLQPGAALDPMPVPELLEIEEYSETAVVLHWSLASDADEHLITGYYAYYRPSS 158
Query: 222 NSTWFNVSEHVIGKEVDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPS 277
++ + + G + I L + YEFK+ + + E S+
Sbjct: 159 SAGEY-FKATIEGAHARSFK------IAP-LETATMYEFKLQSFSAASASEFSALK 206
Score = 56.4 bits (136), Expect = 3e-09
Identities = 25/117 (21%), Positives = 46/117 (39%), Gaps = 12/117 (10%)
Query: 496 PPSAVHIKGINPTTVHVTWRYVSPSFEEEPIIGYKV--RVWEVDQDMSRANDTIIPV--- 550
PP+ ++ ++ +V + W P + PI+ +KV R+ ++ ND I
Sbjct: 4 PPTPPNVTRLSDESVMLRWM--VPRNDGLPIVIFKVQYRMVGKRKNWQTTNDNIPYGKPK 61
Query: 551 -----GNTLDADIVDLSPGKRYHMRVLAFSNGGDGRMSSPAITFQMGEEKEFKSGSP 602
G + A + DL P Y R+LA + D + S+ + F +
Sbjct: 62 WNSELGKSFTASVTDLKPQHTYRFRILAVYSNNDNKESNTSAKFYLQPGAALDPMPV 118
>1uey_A KIAA0343 protein; immunoglobulin-like beta-sandwich fold, NG-CAM
related cell adhesion molecule, fibronectin type III
domain, structural genomics; NMR {Homo sapiens} SCOP:
b.1.2.1
Length = 127
Score = 119 bits (300), Expect = 5e-32
Identities = 34/130 (26%), Positives = 51/130 (39%), Gaps = 8/130 (6%)
Query: 169 STKTTVIVEGPPGLPGGVQVVEVHKTSATIQWTDGATNGRPITHYKIIARTNWNSTWFNV 228
S T V P P +++ + S + WT G N PIT + I +
Sbjct: 6 SGPTPAPVYDVPNPPFDLELTDQLDKSVQLSWTPGDDNNSPITKFIIEYEDAMHKPGLWH 65
Query: 229 SEHVIGKEVDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPSPQYNTPADKPY 288
+G + + N L P+ Y F+V+A N +G PS S QY T A +P
Sbjct: 66 -------HQTEVSGTQTTAQLN-LSPYVNYSFRVMAVNSIGKSLPSEASEQYLTKASEPD 117
Query: 289 QAPSRIGGGG 298
+ P+ G
Sbjct: 118 KNPTSGPSSG 127
Score = 50.8 bits (122), Expect = 6e-08
Identities = 25/135 (18%), Positives = 45/135 (33%), Gaps = 11/135 (8%)
Query: 373 GPGPESEVVTIFSAEDMPQVAPQGVFSRGFNSTAINVTWNPIELIRENIRGRLIGHRIKY 432
G S D+P P + ++ ++W P ++ + I+Y
Sbjct: 1 GSSGSSGPTPA-PVYDVPN-PPFDLELTDQLDKSVQLSWTP----GDDNNSPITKFIIEY 54
Query: 433 WKEDNPEETAVYYLSRTTRNWALIVGLQPDTKYYVKVMAYNNAGEGP---ESERYLERTY 489
+ + + + L P Y +VMA N+ G+ SE+Y T
Sbjct: 55 EDAMHKPGLWHHQTEVSGTQTTAQLNLSPYVNYSFRVMAVNSIGKSLPSEASEQY--LTK 112
Query: 490 RKAPQKPPSAVHIKG 504
P K P++ G
Sbjct: 113 ASEPDKNPTSGPSSG 127
Score = 48.1 bits (115), Expect = 4e-07
Identities = 18/101 (17%), Positives = 36/101 (35%), Gaps = 5/101 (4%)
Query: 496 PPSAVHIKGINPTTVHVTWRYVSPSFEE-EPIIGYKVRVWEVDQDMSRANDTIIPVGNTL 554
PP + + +V ++W +P + PI + + + V T
Sbjct: 19 PPFDLELTDQLDKSVQLSW---TPGDDNNSPITKFIIEYED-AMHKPGLWHHQTEVSGTQ 74
Query: 555 DADIVDLSPGKRYHMRVLAFSNGGDGRMSSPAITFQMGEEK 595
++LSP Y RV+A ++ G S + + +
Sbjct: 75 TTAQLNLSPYVNYSFRVMAVNSIGKSLPSEASEQYLTKASE 115
Score = 46.2 bits (110), Expect = 2e-06
Identities = 29/141 (20%), Positives = 45/141 (31%), Gaps = 22/141 (15%)
Query: 269 GYGEPSSPSPQYNTPADKPYQAPSRIGGGGGKIGDLS-----ISWEPLPREKQNAPNIYY 323
G S P+P D P P + ++ D +SW P + N+P +
Sbjct: 1 GSSGSSGPTPA--PVYDVP-NPPFDL-----ELTDQLDKSVQLSWTP--GDDNNSPITKF 50
Query: 324 KI-FWRKKNDTEFQSETLKEYGNVGIAVVR-IPSEFYYTEYEVKVQAINDVGPGPESEVV 381
I + + + G A + P Y Y +V A+N +G SE
Sbjct: 51 IIEYEDAMHKPGLWHHQTEVSGTQTTAQLNLSP----YVNYSFRVMAVNSIGKSLPSEAS 106
Query: 382 TIFSA-EDMPQVAPQGVFSRG 401
+ P P S G
Sbjct: 107 EQYLTKASEPDKNPTSGPSSG 127
>3grw_A Fibroblast growth factor receptor 3; FGFR3, protein-protein
complex, receptor tyrosine kinas binding, immunoglobulin
domain, kinase, membrane, nucleotid binding; HET: NAG;
2.10A {Homo sapiens}
Length = 241
Score = 122 bits (307), Expect = 1e-31
Identities = 41/211 (19%), Positives = 67/211 (31%), Gaps = 21/211 (9%)
Query: 4 EGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIF----ENGNLLISPVSRDDSGIYS 59
V C P P W K+G R + +L++ V D G Y+
Sbjct: 29 AANTVRFRCPAAGNPTPSISWLKNGREFRGEHRIGGIKLRHQQWSLVMESVVPSDRGNYT 88
Query: 60 CTATNVHGMDESKGRLIVL----HGPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAY 115
C N G L VL H P LP T +++ C +++ +
Sbjct: 89 CVVENKFGSIRQTYTLDVLERSPHRPILQAGLPANQTAVLGSDVEFHCKVYSDAQPHI-- 146
Query: 116 IWTHNGVRIGN---------MDLNELETPNINIDGGLLEITNASFADAGEYECVVKSTVG 166
W + G+ + + + L + N S D GEY C + +G
Sbjct: 147 QWLKHVEVNGSKVGPDGTPYVTVLKSWISESVEADVRLRLANVSERDGGEYLCRATNFIG 206
Query: 167 KISTKTTVIVEGPPGLPGGVQVVEVHKTSAT 197
+ V GP ++VE + +
Sbjct: 207 VAEKAFWLSVHGPRAAEE--ELVEADEAGSV 235
Score = 79.2 bits (195), Expect = 1e-16
Identities = 24/118 (20%), Positives = 37/118 (31%), Gaps = 20/118 (16%)
Query: 4 EGGNVTIFCNPEAAPKPKFVWKKDGNIIGS---------------GGRRKIFENGNLLIS 48
G +V C + +P W K + GS + + L ++
Sbjct: 128 LGSDVEFHCKVYSDAQPHIQWLKHVEVNGSKVGPDGTPYVTVLKSWISESVEADVRLRLA 187
Query: 49 PVSRDDSGIYSCTATNVHGMDESKGRLIVLHGPSYYEQLPPKITIAAHRNLQLRCSAH 106
VS D G Y C ATN G+ E L V + + + A + H
Sbjct: 188 NVSERDGGEYLCRATNFIGVAEKAFWLSVHGPRA-----AEEELVEADEAGSVHHHHH 240
>3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor
protein tyrosine phosphatase; HET: NAG; 2.00A {Mus
musculus} PDB: 3jxa_A*
Length = 384
Score = 125 bits (316), Expect = 1e-31
Identities = 47/176 (26%), Positives = 76/176 (43%), Gaps = 10/176 (5%)
Query: 1 YAGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSC 60
A +G V + C P P +W++ + R+ NG L I ++D+G Y C
Sbjct: 216 PAEKGTTVKLECFALGNPVPTILWRRADGKPIARKARRHKSNGILEIPNFQQEDAGSYEC 275
Query: 61 TATNVHGMDESKGRLIVLHGPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHN 120
A N G + +KG+L + + Q+ I +A ++ C A+ Y W N
Sbjct: 276 VAENSRGKNVAKGQLTF-YAQPNWVQIINDIHVAMEESVFWECKANGRP--KPTYRWLKN 332
Query: 121 GVRIGNMDLNELETPNINIDGGLLEITNASFADAGEYECVVKSTVGKISTKTTVIV 176
G + L I I+ G L IT + +DAG Y+CV ++ G I + + V
Sbjct: 333 GDPL-------LTRDRIQIEQGTLNITIVNLSDAGMYQCVAENKHGVIFSSAELSV 381
Score = 122 bits (308), Expect = 2e-30
Identities = 51/234 (21%), Positives = 80/234 (34%), Gaps = 38/234 (16%)
Query: 4 EGGNVTIFCN-PEAAPKPKFVWKKDGNIIGSGGRR-KIFENGNLLISPVSRDDSGIYSCT 61
G + + C P + + + W + RR E GNL I+ V + D G Y+C
Sbjct: 116 RGQGMVLLCGPPPHSGELSYAWIFNEYPSYQDNRRFVSQETGNLYIAKVEKSDVGNYTCV 175
Query: 62 ATNVHGMDESKGRLIVL----------HGPSYYEQLPPKITIAAHRNLQLRCSAHTEELL 111
TN + G L + P Q P + ++L C A +
Sbjct: 176 VTNTVTNHKVLGPPTPLILRNDGVMGEYEPKIEVQFPETVPAEKGTTVKLECFALGNPVP 235
Query: 112 DVAYIWTH-NGVRIGNMDLNELETPNINIDGGLLEITNASFADAGEYECVVKSTVGKIST 170
+ +W +G I + G+LEI N DAG YECV +++ GK
Sbjct: 236 TI--LWRRADGKPIAR-------KARRHKSNGILEIPNFQQEDAGSYECVAENSRGKNVA 286
Query: 171 KTTVIVEGPPGL--PGGVQVVEVHKT-----------SATIQWTDGATNGRPIT 211
K + P V + ++ T +W NG P+
Sbjct: 287 KGQLTFYAQPNWVQIINDIHVAMEESVFWECKANGRPKPTYRWL---KNGDPLL 337
Score = 114 bits (287), Expect = 1e-27
Identities = 44/201 (21%), Positives = 77/201 (38%), Gaps = 12/201 (5%)
Query: 4 EGGNVTIFCNPEAAPKPKFVWKKDGN-IIGSGGRRKIFENGNLLISPVSRD-DSGIYSCT 61
E V + C + PKP WK +G + R +G+LLI+ ++ D+G Y C
Sbjct: 22 EEKKVKLSCEVKGNPKPHIRWKLNGTDVDIGMDFRYSVVDGSLLINNPNKTQDAGTYQCI 81
Query: 62 ATNVHGMDES-KGRLIVLHGPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHN 120
ATN G S + +L + ++ + +++ + + L C +++Y W N
Sbjct: 82 ATNSFGTIVSREAKLQFAYLENFKTRTRSTVSVRRGQGMVLLCGP-PPHSGELSYAWIFN 140
Query: 121 GVRIGNMDLNELETPNINIDGGLLEITNASFADAGEYECVVKSTVG---KISTKTTVIVE 177
+ + G L I +D G Y CVV +TV + T +I+
Sbjct: 141 EYPSYQDNRRFVSQET-----GNLYIAKVEKSDVGNYTCVVTNTVTNHKVLGPPTPLILR 195
Query: 178 GPPGLPGGVQVVEVHKTSATI 198
+ +EV
Sbjct: 196 NDGVMGEYEPKIEVQFPETVP 216
Score = 83.0 bits (205), Expect = 3e-17
Identities = 26/78 (33%), Positives = 40/78 (51%), Gaps = 1/78 (1%)
Query: 1 YAGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSC 60
+ +V C PKP + W K+G+ + + R +I E G L I+ V+ D+G+Y C
Sbjct: 306 HVAMEESVFWECKANGRPKPTYRWLKNGDPLLTRDRIQI-EQGTLNITIVNLSDAGMYQC 364
Query: 61 TATNVHGMDESKGRLIVL 78
A N HG+ S L V+
Sbjct: 365 VAENKHGVIFSSAELSVI 382
>1va9_A DOWN syndrome cell adhesion molecule like- protein 1B; FNIII
domain, dscaml1 protein, structural genomics; NMR {Homo
sapiens} SCOP: b.1.2.1
Length = 122
Score = 117 bits (295), Expect = 2e-31
Identities = 32/126 (25%), Positives = 50/126 (39%), Gaps = 9/126 (7%)
Query: 377 ESEVVTIFSAEDMPQVAPQGVFSRGFNSTAINVTWNPIELIRENIRGRLIGHRIKYWKED 436
S I + E P P V + S +I VTW + +E G + G++I Y +
Sbjct: 2 SSGSSGISTEEAAPDGPPMDVTLQPVTSQSIQVTWKAPK--KELQNGVIRGYQIGYRENS 59
Query: 437 ---NPEETAVYYLSRTTRNWALIVGLQPDTKYYVKVMAYNNAGEGPESERYLERTYRKAP 493
N + + V + + L+ +Y V V A+N AG GP S T
Sbjct: 60 PGSNGQYSIVEMKATGDSEVYTLDNLKKFAQYGVVVQAFNRAGTGPSSSEINATT----L 115
Query: 494 QKPPSA 499
+ PS+
Sbjct: 116 ESGPSS 121
Score = 77.0 bits (190), Expect = 4e-17
Identities = 26/117 (22%), Positives = 45/117 (38%), Gaps = 3/117 (2%)
Query: 480 ESERYLERTYRKAPQKPPSAVHIKGINPTTVHVTWRYVSPSFEEEPIIGYKVRVWEVDQ- 538
S T AP PP V ++ + ++ VTW+ + I GY++ E
Sbjct: 2 SSGSSGISTEEAAPDGPPMDVTLQPVTSQSIQVTWKAPKKELQNGVIRGYQIGYRENSPG 61
Query: 539 -DMSRANDTIIPVGNTLDADIVDLSPGKRYHMRVLAFSNGGDGRMSSPAITFQMGEE 594
+ + + G++ + +L +Y + V AF+ G G SS I E
Sbjct: 62 SNGQYSIVEMKATGDSEVYTLDNLKKFAQYGVVVQAFNRAGTGPSSSE-INATTLES 117
Score = 70.5 bits (173), Expect = 6e-15
Identities = 28/121 (23%), Positives = 47/121 (38%), Gaps = 1/121 (0%)
Query: 274 SSPSPQYNTPADKPYQAPSRIGGGGGKIGDLSISWEPLPREKQNAPNIYYKIFWRKKNDT 333
SS S +T P P + + ++W+ +E QN Y+I +R+ +
Sbjct: 2 SSGSSGISTEEAAPDGPPMDVTLQPVTSQSIQVTWKAPKKELQNGVIRGYQIGYRENSPG 61
Query: 334 EFQSETLKEYGNVG-IAVVRIPSEFYYTEYEVKVQAINDVGPGPESEVVTIFSAEDMPQV 392
++ E G V + + + +Y V VQA N G GP S + + E P
Sbjct: 62 SNGQYSIVEMKATGDSEVYTLDNLKKFAQYGVVVQAFNRAGTGPSSSEINATTLESGPSS 121
Query: 393 A 393
Sbjct: 122 G 122
Score = 46.6 bits (111), Expect = 2e-06
Identities = 26/101 (25%), Positives = 37/101 (36%), Gaps = 9/101 (8%)
Query: 179 PPGLPGGVQVVEVHKTSATIQWT---DGATNGRPITHYKIIARTNWNSTWFNVSEHVIGK 235
P G P V + V S + W NG I Y+I R N + S
Sbjct: 15 PDGPPMDVTLQPVTSQSIQVTWKAPKKELQNGV-IRGYQIGYRENSPGSNGQYSI----V 69
Query: 236 EVDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSP 276
E+ + +++N L ++ Y V A N G G SS
Sbjct: 70 EMKATGDSEVYTLDN-LKKFAQYGVVVQAFNRAGTGPSSSE 109
>2yd9_A Receptor-type tyrosine-protein phosphatase S; hydrolase; HET: NAG
B3P; 2.60A {Homo sapiens}
Length = 304
Score = 123 bits (309), Expect = 3e-31
Identities = 44/186 (23%), Positives = 67/186 (36%), Gaps = 17/186 (9%)
Query: 4 EGGNVTIFCNPEAAPKPKFVWKKDGNII---GSGGRRKIFENGNLLISPVSRDDSGIYSC 60
T+ C P P+ W KD + S GR K +G L I D G Y C
Sbjct: 122 RTRTATMLCAASGNPDPEITWFKDFLPVDPSASNGRIKQLRSGALQIESSEETDQGKYEC 181
Query: 61 TATNVHGMDESKG---RLIVLHGPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIW 117
ATN G+ S + V + + LP I N+ + C A + V W
Sbjct: 182 VATNSAGVRYSSPANLYVRVQNVAPRFSILPMSHEIMPGGNVNITCVAVGSPMPYV--KW 239
Query: 118 THNGVRIGNMDLNELETPNINIDGGLLEITNASFADAGEYECVVKSTVGKISTKTTVIVE 177
+ ++ + +LE+T+ D+ Y CV S++G I + V+
Sbjct: 240 MQGAEDL-------TPEDDMPVGRNVLELTDVK--DSANYTCVAMSSLGVIEAVAQITVK 290
Query: 178 GPPGLP 183
P
Sbjct: 291 SLPKAG 296
Score = 109 bits (275), Expect = 1e-26
Identities = 43/194 (22%), Positives = 69/194 (35%), Gaps = 17/194 (8%)
Query: 2 AGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIF----ENGNLLISPV-SRDDSG 56
GG + C PKP+ W K G + S I L I P+ + D
Sbjct: 18 GVSGGVASFVCQATGDPKPRVTWNKKGKKVNSQRFETIEFDESAGAVLRIQPLRTPRDEN 77
Query: 57 IYSCTATNVHGMDESKGRLIVLHGPSYYEQLP-----PK-ITIAAHRNLQLRCSAHTEEL 110
+Y C A N G +L VL P P+ + R + C+A
Sbjct: 78 VYECVAQNSVGEITVHAKLTVLREDQLPSGFPNIDMGPQLKVVERTRTATMLCAASGNPD 137
Query: 111 LDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEITNASFADAGEYECVVKSTVG-KIS 169
++ W + + + N + G L+I ++ D G+YECV ++ G + S
Sbjct: 138 PEIT--WFKDFLPVDPSASNGRIKQ---LRSGALQIESSEETDQGKYECVATNSAGVRYS 192
Query: 170 TKTTVIVEGPPGLP 183
+ + V P
Sbjct: 193 SPANLYVRVQNVAP 206
>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker,
immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A
Length = 642
Score = 127 bits (321), Expect = 4e-31
Identities = 37/177 (20%), Positives = 59/177 (33%), Gaps = 17/177 (9%)
Query: 4 EGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTAT 63
+ V C PEA W ++ S + N L + V+R+D+ Y C
Sbjct: 481 DKDAVAFTCEPEAQNTTYLWWVNGQSLPVSPRLQLSNGNRTLTLFNVTRNDARAYVCGIQ 540
Query: 64 NVHGMDESKG-RLIVLHGPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGV 122
N + S L VL+GP PP + + NL L C + + Y W NG+
Sbjct: 541 NSVSANRSDPVTLDVLYGPDTPIISPPDSSYLSGANLNLSCHSASNPS--PQYSWRINGI 598
Query: 123 RIGNMDLNELETPNINIDGGLLEITNASFADAGEYECVVKSTVGKISTKTTVIVEGP 179
+ +L I + + G Y C V + + +
Sbjct: 599 PQQH--------------TQVLFIAKITPNNNGTYACFVSNLATGRNNSIVKSITVS 641
Score = 124 bits (313), Expect = 4e-30
Identities = 44/230 (19%), Positives = 73/230 (31%), Gaps = 37/230 (16%)
Query: 1 YAGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSC 60
Y G N+++ C+ + P ++ W DGNI L IS ++ +SG+Y+C
Sbjct: 392 YYRPGVNLSLSCHAASNPPAQYSWLIDGNIQQHTQE--------LFISNITEKNSGLYTC 443
Query: 61 TATNVHGMDESKGRLIVLHG---PSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIW 117
A N + P + + C + + Y+W
Sbjct: 444 QANNSASGHSRTTVKTITVSAELPKPSISSNNSKPVEDKDAVAFTCEPEAQ---NTTYLW 500
Query: 118 THNGVRIGNMDLNELETPNINIDGGLLEITNASFADAGEYECVVKSTVGKISTKT-TVIV 176
NG + +L N L + N + DA Y C ++++V + T+ V
Sbjct: 501 WVNGQSLPVSPRLQLSNGN-----RTLTLFNVTRNDARAYVCGIQNSVSANRSDPVTLDV 555
Query: 177 EGPP----GLPGGVQVVE----------VHKTSATIQWTDGATNGRPITH 212
P P + S W NG P H
Sbjct: 556 LYGPDTPIISPPDSSYLSGANLNLSCHSASNPSPQYSWR---INGIPQQH 602
Score = 118 bits (298), Expect = 3e-28
Identities = 41/181 (22%), Positives = 62/181 (34%), Gaps = 17/181 (9%)
Query: 4 EGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTAT 63
+ V + C PE W + ++ S + +N L + V+R+D G Y C
Sbjct: 303 DEDAVALTCEPEIQNTTYLWWVNNQSLPVSPRLQLSNDNRTLTLLSVTRNDVGPYECGIQ 362
Query: 64 NVHGMDESKG-RLIVLHGPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGV 122
N +D S L VL+GP P NL L C A + Y W +G
Sbjct: 363 NELSVDHSDPVILNVLYGPDDPTISPSYTYYRPGVNLSLSCHAASNPPAQ--YSWLIDGN 420
Query: 123 RIGNMDLNELETPNINIDGGLLEITNASFADAGEYECVVKSTVGKISTKTTVIVEGPPGL 182
L I+N + ++G Y C ++ S T + L
Sbjct: 421 IQ--------------QHTQELFISNITEKNSGLYTCQANNSASGHSRTTVKTITVSAEL 466
Query: 183 P 183
P
Sbjct: 467 P 467
Score = 114 bits (287), Expect = 8e-27
Identities = 40/230 (17%), Positives = 71/230 (30%), Gaps = 37/230 (16%)
Query: 1 YAGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSC 60
G N+ + C+ + P ++ W +G S L I ++ ++SG Y+C
Sbjct: 214 SYRSGENLNLSCHAASNPPAQYSWFVNGTFQQS--------TQELFIPNITVNNSGSYTC 265
Query: 61 TATNVHGMDESKG--RLIVLHGPSYYEQLPPK-ITIAAHRNLQLRCSAHTEELLDVAYIW 117
A N + V P + + L C + + Y+W
Sbjct: 266 QAHNSDTGLNRTTVTTITVYAEPPKPFITSNNSNPVEDEDAVALTCEPEIQ---NTTYLW 322
Query: 118 THNGVRIGNMDLNELETPNINIDGGLLEITNASFADAGEYECVVKSTVGKISTKT-TVIV 176
N + +L D L + + + D G YEC +++ + + + V
Sbjct: 323 WVNNQSLPVSPRLQLSN-----DNRTLTLLSVTRNDVGPYECGIQNELSVDHSDPVILNV 377
Query: 177 EGPPGLP-----------GGVQVVEVHKTS---ATIQWTDGATNGRPITH 212
P P G + H S A W +G H
Sbjct: 378 LYGPDDPTISPSYTYYRPGVNLSLSCHAASNPPAQYSWL---IDGNIQQH 424
Score = 109 bits (273), Expect = 4e-25
Identities = 42/183 (22%), Positives = 62/183 (33%), Gaps = 19/183 (10%)
Query: 4 EGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTAT 63
+ V C PE W + ++ S + N L + V+R+D+ Y C
Sbjct: 125 DKDAVAFTCEPETQDATYLWWVNNQSLPVSPRLQLSNGNRTLTLFNVTRNDTASYKCETQ 184
Query: 64 NVHGMDESKG-RLIVLHGPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGV 122
N S L VL+GP P + + NL L C A Y W NG
Sbjct: 185 NPVSARRSDSVILNVLYGPDAPTISPLNTSYRSGENLNLSCHA--ASNPPAQYSWFVNGT 242
Query: 123 RIGNMDLNELETPNINIDGGLLEITNASFADAGEYECVVKSTVGKI--STKTTVIVEGPP 180
L I N + ++G Y C ++ + +T TT+ V P
Sbjct: 243 FQ--------------QSTQELFIPNITVNNSGSYTCQAHNSDTGLNRTTVTTITVYAEP 288
Query: 181 GLP 183
P
Sbjct: 289 PKP 291
Score = 105 bits (262), Expect = 8e-24
Identities = 36/199 (18%), Positives = 64/199 (32%), Gaps = 30/199 (15%)
Query: 4 EGGNVTIFCNPEAAPKPKFVWKKDGNIIGSG-------------------GRRKIFENGN 44
EG V + + + W K + G+ GR I+ N +
Sbjct: 13 EGKEVLLLVHNLPQHLFGYSWYKGERVDGNRQIIGYVIGTQQATPGPAYSGREIIYPNAS 72
Query: 45 LLISPVSRDDSGIYSCTATN-VHGMDESKGRLIVLH-GPSYYEQLPPKITIAAHRNLQLR 102
LLI + ++D+G Y+ +E+ G+ V P + +
Sbjct: 73 LLIQNIIQNDTGFYTLHVIKSDLVNEEATGQFRVYPELPKPSISSNNSKPVEDKDAVAFT 132
Query: 103 CSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEITNASFADAGEYECVVK 162
C T+ D Y+W N L ++ L + N + D Y+C +
Sbjct: 133 CEPETQ---DATYLWWVNNQ-----SLPVSPRLQLSNGNRTLTLFNVTRNDTASYKCETQ 184
Query: 163 STVG-KISTKTTVIVEGPP 180
+ V + S + V P
Sbjct: 185 NPVSARRSDSVILNVLYGP 203
>2yd6_A PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sapiens} PDB:
2yd7_A 2yd2_A 2yd3_A 2yd4_A* 2yd8_A* 2yd5_A* 3pxh_A
Length = 212
Score = 119 bits (300), Expect = 5e-31
Identities = 46/190 (24%), Positives = 75/190 (39%), Gaps = 16/190 (8%)
Query: 4 EGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKI-FENGN---LLISPV-SRDDSGIY 58
GG + C P+PK VW K G + + I F++G+ L I P+ + D IY
Sbjct: 20 SGGVASFICQATGDPRPKIVWNKKGKKVSNQRFEVIEFDDGSGSVLRIQPLRTPRDEAIY 79
Query: 59 SCTATNVHGMDESKGRLIVLHGPSYYEQLPPKI-------TIAAHRNLQLRCSAHTEELL 111
C A+N G RL V + P I + R + C+A
Sbjct: 80 ECVASNNVGEISVSTRLTV-LREDQIPRGFPTIDMGPQLKVVERTRTATMLCAASGNPDP 138
Query: 112 DVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEITNASFADAGEYECVVKSTVG-KIST 170
++ W + + + + N + G L+I + +D G+YECV ++ G + S
Sbjct: 139 EI--TWFKDFLPVDTSNNNGRIKQLRSESIGALQIEQSEESDQGKYECVATNSAGTRYSA 196
Query: 171 KTTVIVEGPP 180
+ V G
Sbjct: 197 PANLYVRGTK 206
Score = 75.6 bits (186), Expect = 8e-16
Identities = 21/90 (23%), Positives = 28/90 (31%), Gaps = 7/90 (7%)
Query: 4 EGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFE------NGNLLISPVSRDDSGI 57
T+ C P P+ W KD + + + G L I D G
Sbjct: 122 RTRTATMLCAASGNPDPEITWFKDFLPVDTSNNNGRIKQLRSESIGALQIEQSEESDQGK 181
Query: 58 YSCTATNVHGMDES-KGRLIVLHGPSYYEQ 86
Y C ATN G S L V ++
Sbjct: 182 YECVATNSAGTRYSAPANLYVRGTKHHHHH 211
Score = 51.4 bits (123), Expect = 2e-07
Identities = 20/84 (23%), Positives = 35/84 (41%), Gaps = 3/84 (3%)
Query: 117 WTHNGVRIGNMDLNELETPNINIDGGLLEITNASFA-DAGEYECVVKSTVGKISTKTTVI 175
W G ++ N +E + + G +L I D YECV + VG+IS T +
Sbjct: 40 WNKKGKKVSNQRFEVIEFDDGS--GSVLRIQPLRTPRDEAIYECVASNNVGEISVSTRLT 97
Query: 176 VEGPPGLPGGVQVVEVHKTSATIQ 199
V +P G +++ ++
Sbjct: 98 VLREDQIPRGFPTIDMGPQLKVVE 121
>3ojm_B Fibroblast growth factor receptor 2; beta trefoil motif,
immunoglobulin-like domain, growth facto factor
receptor, extracellular; 2.10A {Homo sapiens} PDB:
1nun_B* 3oj2_C 2fdb_P 1iil_E 1ev2_E 1e0o_B* 1ii4_E
1djs_A 3ojv_C* 1cvs_C 1fq9_C* 1evt_C
Length = 231
Score = 119 bits (300), Expect = 7e-31
Identities = 42/200 (21%), Positives = 75/200 (37%), Gaps = 18/200 (9%)
Query: 4 EGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIF----ENGNLLISPVSRDDSGIYS 59
V C P P W K+G R + ++ +L++ V D G Y+
Sbjct: 33 AANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYT 92
Query: 60 CTATNVHGMDESKGRLIVL----HGPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAY 115
C N +G L V+ H P LP + +++ C +++ +
Sbjct: 93 CVVENEYGSINHTYHLDVVERSRHRPILQAGLPANASTVVGGDVEFVCKVYSDAQPHI-- 150
Query: 116 IWTHNGVRIGNMDLNE-------LETPNINI-DGGLLEITNASFADAGEYECVVKSTVGK 167
W + + G+ + L+ IN + +L + N + ADAGEY C V + +G+
Sbjct: 151 QWIKHVEKNGSKYGPDGLPYLKVLKHSGINSSNAEVLALFNVTEADAGEYICKVSNYIGQ 210
Query: 168 ISTKTTVIVEGPPGLPGGVQ 187
+ + V PG +
Sbjct: 211 ANQSAWLTVLPKQQAPGREK 230
>3lcy_A Titin; A-BAND, IG tandem domains, ATP-binding, calmodulin-BI
cardiomyopathy, disease mutation, disulfide bond,
immunoglo domain, isopeptide bond; 2.50A {Homo sapiens}
Length = 197
Score = 117 bits (296), Expect = 1e-30
Identities = 37/189 (19%), Positives = 66/189 (34%), Gaps = 29/189 (15%)
Query: 4 EGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGN---LLISPVSRDDSGIYSC 60
G + C P P W + G + + K+ +G L + ++D G+Y+C
Sbjct: 21 LGEAAQLSCQIVGRPLPDIKWYRFGKELIQSRKYKMSSDGRTHTLTVMTEEQEDEGVYTC 80
Query: 61 TATNVHGMDESKGRLIVLHGPSYYE--QLPPKITIAAHRNLQLRCSAHTEELLDVAY--- 115
ATN G E+ +L++ P ++ L K A L+L +
Sbjct: 81 IATNEVGEVETSSKLLLQATPQFHPGYPLKEKYYGAVGSTLRLHVMY-------IGRPVP 133
Query: 116 --IWTHNGVRIGNMDLNELETPNINI----DGGLLEITNASF-ADAGEYECVVKSTVGKI 168
W H + + NI I L + N AG+Y+ + + G +
Sbjct: 134 AMTWFHGQKLL-------QNSENITIENTEHYTHLVMKNVQRKTHAGKYKVQLSNVFGTV 186
Query: 169 STKTTVIVE 177
V ++
Sbjct: 187 DAILDVEIQ 195
Score = 80.9 bits (200), Expect = 1e-17
Identities = 14/81 (17%), Positives = 28/81 (34%), Gaps = 4/81 (4%)
Query: 1 YAGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGN---LLISPVSR-DDSG 56
Y G + + P P W ++ + I + L++ V R +G
Sbjct: 114 YGAVGSTLRLHVMYIGRPVPAMTWFHGQKLLQNSENITIENTEHYTHLVMKNVQRKTHAG 173
Query: 57 IYSCTATNVHGMDESKGRLIV 77
Y +NV G ++ + +
Sbjct: 174 KYKVQLSNVFGTVDAILDVEI 194
Score = 55.5 bits (134), Expect = 6e-09
Identities = 18/132 (13%), Positives = 39/132 (29%), Gaps = 33/132 (25%)
Query: 115 YIWTHNGVRIGNMDLNELETPNINI--DGGL--LEITNASFADAGEYECVVKSTVGKIST 170
W G + +++ + DG L + D G Y C+ + VG++ T
Sbjct: 39 IKWYRFGKEL-------IQSRKYKMSSDGRTHTLTVMTEEQEDEGVYTCIATNEVGEVET 91
Query: 171 KTTVIVEGPPGLPGGV-----QVVEVHKT-----------SATIQWTDGATNGRPIT--- 211
+ ++++ P G V T + W + +
Sbjct: 92 SSKLLLQATPQFHPGYPLKEKYYGAVGSTLRLHVMYIGRPVPAMTWFH---GQKLLQNSE 148
Query: 212 HYKIIARTNWNS 223
+ I ++
Sbjct: 149 NITIENTEHYTH 160
>2iep_A Muscle-specific kinase receptor; beta-sandwich, signaling
protein,transferase; 2.21A {Rattus norvegicus}
Length = 192
Score = 117 bits (296), Expect = 1e-30
Identities = 49/181 (27%), Positives = 68/181 (37%), Gaps = 15/181 (8%)
Query: 2 AGEGGNVTIFCNPEAAPKPKFVWKKDGNII-GSGGRRKIFENGNLL-ISPVSRDDSGIYS 59
A T C E+ P+P+ W ++ +I R I ENG LL I V D GIY
Sbjct: 19 ALVEEVATFMCAVESYPQPEISWTRNKILIKLFDTRYSIRENGQLLTILSVEDSDDGIYC 78
Query: 60 CTATNVHGMDESKGRLIVLHGPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTH 119
CTA N G + + + P + I L C+ V W
Sbjct: 79 CTANNGVGGAVESCGALQVKMKPKITRPPINVKIIEGLKAVLPCTTMGNPKPSV--SWIK 136
Query: 120 NGVRIGNMDLNELETPNINI-DGGLLEITNASFADAGEYECVVKSTVGKISTKT---TVI 175
+ E I + + G L I N DAG+Y CV K+++G +K V
Sbjct: 137 GDSAL-------RENSRIAVLESGSLRIHNVQKEDAGQYRCVAKNSLGTAYSKLVKLEVE 189
Query: 176 V 176
V
Sbjct: 190 V 190
Score = 94.0 bits (234), Expect = 3e-22
Identities = 25/78 (32%), Positives = 35/78 (44%), Gaps = 1/78 (1%)
Query: 1 YAGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSC 60
EG + C PKP W K + + R + E+G+L I V ++D+G Y C
Sbjct: 111 KIIEGLKAVLPCTTMGNPKPSVSWIKGDSALRENSRIAVLESGSLRIHNVQKEDAGQYRC 170
Query: 61 TATNVHGMDESKG-RLIV 77
A N G SK +L V
Sbjct: 171 VAKNSLGTAYSKLVKLEV 188
>1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus
gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB:
2om5_A
Length = 382
Score = 122 bits (308), Expect = 2e-30
Identities = 44/178 (24%), Positives = 70/178 (39%), Gaps = 13/178 (7%)
Query: 1 YAGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSC 60
YA G VT+ C P P+ W+K GS + + L I V +D G Y C
Sbjct: 218 YALTGQMVTLECFAFGNPVPQIKWRKLD---GSQTSKWLSSEPLLHIQNVDFEDEGTYEC 274
Query: 61 TATNVHGMDESKGRLIVLHGPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHN 120
A N+ G D +GR+I+ H + + +L+ C A + A W +
Sbjct: 275 EAENIKGRDTYQGRIII-HAQPDWLDVITDTEADIGSDLRWSCVASGKP--RPAVRWLRD 331
Query: 121 GVRIGNMDLNELETPNINIDGGLLEITNASFADAGEYECVVKSTVGKISTKTTVIVEG 178
G + I + GG L + D+G Y+CV ++ G + + V+
Sbjct: 332 GQPLA-------SQNRIEVSGGELRFSKLVLEDSGMYQCVAENKHGTVYASAELTVQA 382
Score = 118 bits (296), Expect = 6e-29
Identities = 47/236 (19%), Positives = 71/236 (30%), Gaps = 42/236 (17%)
Query: 4 EGGNVTIFCN-PEAAPKPKFVWKKDGN---IIGSGGRRKIFENGNLLISPVSRDDSGIYS 59
EG V C+ P P + W + I G R GNL I+ D G YS
Sbjct: 115 EGWGVMFTCSPPPHYPALSYRWLLNEFPNFIPADGRRFVSQTTGNLYIAKTEASDLGNYS 174
Query: 60 CTATNVHGMDESK-----------GRLIVLHGPSYYEQLPPKITIAAHRNLQLRCSAHTE 108
C AT+ + PS + P + + L C A
Sbjct: 175 CFATSHIDFITKSVFSKFSQLSLAAEDARQYAPSIKAKFPADTYALTGQMVTLECFAFGN 234
Query: 109 ELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEITNASFADAGEYECVVKSTVGKI 168
+ + W T LL I N F D G YEC ++ G+
Sbjct: 235 PVPQI--KWRKLDGSQ---------TSKWLSSEPLLHIQNVDFEDEGTYECEAENIKGRD 283
Query: 169 STKTTVIVEGPPGLPGGVQVVEVHKTSA-------------TIQWTDGATNGRPIT 211
+ + +I+ P + E S ++W +G+P+
Sbjct: 284 TYQGRIIIHAQPDWLDVITDTEADIGSDLRWSCVASGKPRPAVRWL---RDGQPLA 336
Score = 106 bits (266), Expect = 6e-25
Identities = 39/178 (21%), Positives = 60/178 (33%), Gaps = 7/178 (3%)
Query: 2 AGEGGNVTIFCNPEAAPKPKFVWKKDGNIIG-SGGRRKIFENGNLLI-SPVSRDDSGIYS 59
VT+ C A P + WK +G + R G+L+I +PV D+G Y
Sbjct: 19 GSAEEKVTLTCRARANPPATYRWKMNGTELKMGPDSRYRLVAGDLVISNPVKAKDAGSYQ 78
Query: 60 CTATNVHGMDES-KGRLIVLHGPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWT 118
C ATN G S + L + + + I + CS ++Y W
Sbjct: 79 CVATNARGTVVSREASLRFGFLQEFSAEERDPVKITEGWGVMFTCSP-PPHYPALSYRWL 137
Query: 119 HNGVRIGNMDLNELETPNINIDGGLLEITNASFADAGEYECVVKSTVGKISTKTTVIV 176
N + ++ G L I +D G Y C S + I+
Sbjct: 138 LNEFPN---FIPADGRRFVSQTTGNLYIAKTEASDLGNYSCFATSHIDFITKSVFSKF 192
>3s97_C Contactin-1; carbonic anhdyrase like immunoglobulin, cell adhesion
comple adhesion; HET: NAG; 2.30A {Homo sapiens}
Length = 201
Score = 117 bits (294), Expect = 2e-30
Identities = 40/189 (21%), Positives = 65/189 (34%), Gaps = 23/189 (12%)
Query: 4 EGGNVTIFCNPEAAPKP--KFVWKKDGNII---GSGGRRKIFENGNLLISPVSRDDSGIY 58
EG + + C+P + W + + R NGNL I+ V D G Y
Sbjct: 22 EGKGMVLLCDPPYHFPDDLSYRWLLNEFPVFITMDKRRFVSQTNGNLYIANVEASDKGNY 81
Query: 59 SCTATNVHGMDESKGRLIVL---------HGPSYYEQLPPKITIAAHRNLQLRCSAHTEE 109
SC ++ + I L P+ + +N+ L C A
Sbjct: 82 SCFVSSPSITKSVFSKFIPLIPIPERTTKPYPADIVVQFKDVYALMGQNVTLECFALGNP 141
Query: 110 LLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEITNASFADAGEYECVVKSTVGKIS 169
+ D+ W + T I+ G +L+I N D G YEC ++ GK
Sbjct: 142 VPDI--RWRKVLEPM-------PSTAEISTSGAVLKIFNIQLEDEGIYECEAENIRGKDK 192
Query: 170 TKTTVIVEG 178
+ + V+
Sbjct: 193 HQARIYVQA 201
Score = 77.2 bits (190), Expect = 2e-16
Identities = 24/77 (31%), Positives = 33/77 (42%), Gaps = 1/77 (1%)
Query: 1 YAGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSC 60
YA G NVT+ C P P W+K + L I + +D GIY C
Sbjct: 124 YALMGQNVTLECFALGNPVPDIRWRKVLEPM-PSTAEISTSGAVLKIFNIQLEDEGIYEC 182
Query: 61 TATNVHGMDESKGRLIV 77
A N+ G D+ + R+ V
Sbjct: 183 EAENIRGKDKHQARIYV 199
>1nbq_A JAM, junctional adhesion molecule 1, PAM-1; reovirus receptor,
tight junction formation, immunoglobulin superfamily,
immune system; 2.90A {Homo sapiens} SCOP: b.1.1.1
b.1.1.4 PDB: 3eoy_G
Length = 209
Score = 117 bits (294), Expect = 2e-30
Identities = 38/191 (19%), Positives = 63/191 (32%), Gaps = 17/191 (8%)
Query: 4 EGGNVTIFCNPEAAPKPKFVWKKDG-----------NIIGSGGRRKIFENGNLLISPVSR 52
E V + C P+ WK D I S R F + V+R
Sbjct: 18 ENNPVKLSCAYSGFSSPRVEWKFDQGDTTRLVCYNNKITASYEDRVTFLPTGITFKSVTR 77
Query: 53 DDSGIYSCTATNVHGMDESKGRLIVL-HGPSYYEQLPPKITIAAHRNLQLRCSAHTEELL 111
+D+G Y+C + G + ++ ++ P + + L CS
Sbjct: 78 EDTGTYTCMVSEEGGNSYGEVKVKLIVLVPPSKPTVNIPSSATIGNRAVLTCSEQDGSPP 137
Query: 112 DVAYIWTHNGVRI----GNMDLNELETPNINIDGGLLEITNASFADAGEYECVVKSTVGK 167
Y W +G+ + + + +N G L S +D GEY C ++ G
Sbjct: 138 -SEYTWFKDGIVMPTNPKSTRAFSNSSYVLNPTTGELVFDPLSASDTGEYSCEARNGYGT 196
Query: 168 ISTKTTVIVEG 178
T V +E
Sbjct: 197 PMTSNAVRMEA 207
Score = 76.5 bits (188), Expect = 4e-16
Identities = 20/87 (22%), Positives = 37/87 (42%), Gaps = 11/87 (12%)
Query: 2 AGEGGNVTIFCN-PEAAPKPKFVWKKDGNIIGSGGRRKIF----------ENGNLLISPV 50
A G + C+ + +P ++ W KDG ++ + + G L+ P+
Sbjct: 119 ATIGNRAVLTCSEQDGSPPSEYTWFKDGIVMPTNPKSTRAFSNSSYVLNPTTGELVFDPL 178
Query: 51 SRDDSGIYSCTATNVHGMDESKGRLIV 77
S D+G YSC A N +G + + +
Sbjct: 179 SASDTGEYSCEARNGYGTPMTSNAVRM 205
>2v44_A NCAM2, neural cell adhesion molecule 2; phosphorylation,
immunoglobulin domain, IG, membrane, homphilic,
glycoprotein, transmembrane; 1.77A {Homo sapiens} PDB:
2xy2_A* 2vaj_A
Length = 189
Score = 116 bits (292), Expect = 3e-30
Identities = 30/180 (16%), Positives = 61/180 (33%), Gaps = 11/180 (6%)
Query: 2 AGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENG---NLLISPVSRDDSGIY 58
G + C P+ + G I S R + + G L I + +D+GIY
Sbjct: 14 LSVGESKFFTCTAIGEPESIDWYNPQGEKIISTQRVVVQKEGVRSRLTIYNANIEDAGIY 73
Query: 59 SCTATNVHGMDESKGRLIVLHGPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWT 118
C AT+ G + ++ ++ + ++ + ++ C + V W
Sbjct: 74 RCQATDAKGQTQEATVVLEIYQKLTFREVVSPQEFKQGEDAEVVCRVSSSPAPAV--SWL 131
Query: 119 HNGVRIGNMDLNELETPNINI-DGGLLEITNASFADAGEYECVVKSTVGKISTKTTVIVE 177
++ + + + L+I N + +D G Y C + +IV
Sbjct: 132 YHNEEV-----TTISDNRFAMLANNNLQILNINKSDEGIYRCEGRVEARGEIDFRDIIVI 186
>3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo
sapiens} PDB: 3p40_A*
Length = 404
Score = 121 bits (306), Expect = 3e-30
Identities = 41/175 (23%), Positives = 65/175 (37%), Gaps = 7/175 (4%)
Query: 2 AGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCT 61
G ++ + C P P W K G + S + N L I+ VS +DSG Y C
Sbjct: 234 VLRGMDLLLECIASGVPTPDIAWYKKGGDLPSDKAKFENFNKALRITNVSEEDSGEYFCL 293
Query: 62 ATNVHGMDESKGRLIVLHGPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNG 121
A+N G + V Y+ P + +A + +L C A+ V W NG
Sbjct: 294 ASNKMGSIRHTISVRV-KAAPYWLDEPKNLILAPGEDGRLVCRANGNPKPTV--QWMVNG 350
Query: 122 VRIGNMDLNELETPNINIDGGLLEITNASFADAGEYECVVKSTVGKISTKTTVIV 176
+ + N PN + G + + + Y+C + G + V V
Sbjct: 351 EPLQSAPPN----PNREVAGDTIIFRDTQISSRAVYQCNTSNEHGYLLANAFVSV 401
Score = 118 bits (296), Expect = 8e-29
Identities = 47/192 (24%), Positives = 66/192 (34%), Gaps = 23/192 (11%)
Query: 4 EGGNVTIFCN-PEAAPKPKFVWKKDGNIIGSGGRR-KIFENGNLLISPVSR-DDSGIYSC 60
EG +T+ CN P P P W + +R NG+L S V D YSC
Sbjct: 130 EGAPLTLQCNPPPGLPSPVIFWMSSSMEPITQDKRVSQGHNGDLYFSNVMLQDMQTDYSC 189
Query: 61 TATNVHGMDESKG---RLIVLHGPSYYEQLPPKI---------TIAAHRNLQLRCSAHTE 108
A + L VL E+ P + + +L L C A
Sbjct: 190 NARFHFTHTIQQKNPFTLKVLTTRGVAERTPSFMYPQGTASSQMVLRGMDLLLECIASGV 249
Query: 109 ELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEITNASFADAGEYECVVKSTVGKI 168
D+ W G + + L ITN S D+GEY C+ + +G I
Sbjct: 250 PTPDI--AWYKKGGDLPSDKAK------FENFNKALRITNVSEEDSGEYFCLASNKMGSI 301
Query: 169 STKTTVIVEGPP 180
+V V+ P
Sbjct: 302 RHTISVRVKAAP 313
Score = 99.2 bits (247), Expect = 2e-22
Identities = 39/192 (20%), Positives = 64/192 (33%), Gaps = 18/192 (9%)
Query: 4 EGGNVTIFCNPEAAPKPKFVWKKDGNII--GSGGRRKIFE-NGNLLISPVS----RDDSG 56
N+ I C + P P F W ++ R + +G L+I S + G
Sbjct: 31 PRDNILIECEAKGNPAPSFHWTRNSRFFNIAKDPRVSMRRRSGTLVIDFRSGGRPEEYEG 90
Query: 57 IYSCTATNVHGMDES-KGRLIVLHGPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAY 115
Y C A N G S + RL V P + ++ + + L L+C+ L
Sbjct: 91 EYQCFARNKFGTALSNRIRLQVSKSPLWPKENLDPVVVQEGAPLTLQCNP-PPGLPSPVI 149
Query: 116 IWTHNGVRIGNMDLNELETPNINIDGGLLEITNASFADA-GEYECVVKSTVG---KISTK 171
W + + D + N G L +N D +Y C + +
Sbjct: 150 FWMSSSMEPITQDKRVSQGHN-----GDLYFSNVMLQDMQTDYSCNARFHFTHTIQQKNP 204
Query: 172 TTVIVEGPPGLP 183
T+ V G+
Sbjct: 205 FTLKVLTTRGVA 216
Score = 81.8 bits (202), Expect = 1e-16
Identities = 14/79 (17%), Positives = 25/79 (31%), Gaps = 2/79 (2%)
Query: 2 AGEGGNVTIFCNPEAAPKPKFVWKKDGNII--GSGGRRKIFENGNLLISPVSRDDSGIYS 59
G + + C PKP W +G + + ++ +Y
Sbjct: 324 LAPGEDGRLVCRANGNPKPTVQWMVNGEPLQSAPPNPNREVAGDTIIFRDTQISSRAVYQ 383
Query: 60 CTATNVHGMDESKGRLIVL 78
C +N HG + + VL
Sbjct: 384 CNTSNEHGYLLANAFVSVL 402
>2wim_A N-CAM 2, NCAM2, neural cell adhesion molecule 2; cell membrane,
transmembrane, immunoglobulin; HET: NDG NAG; 3.00A {Homo
sapiens}
Length = 291
Score = 118 bits (298), Expect = 6e-30
Identities = 35/184 (19%), Positives = 61/184 (33%), Gaps = 16/184 (8%)
Query: 4 EGGNVTIFCNPEAAPKPKFVWKKDGNII--GSGGRRKIFENGNLLISPVSRDDSGIYSCT 61
+G + + C ++P P W + S R + N NL I +++ D GIY C
Sbjct: 112 QGEDAEVVCRVSSSPAPAVSWLYHNEEVTTISDNRFAMLANNNLQILNINKSDEGIYRCE 171
Query: 62 ATN-VHGMDESKGRLIVLHGPSYYEQLPPKITIAAHRN--LQLRCSAHTEELLDVAYIWT 118
G + + +++++ P A R + C A + W
Sbjct: 172 GRVEARGEIDFRDIIVIVNVPPAISMPQKSFNATAERGEEMTFSCRASGSPEPAI--SWF 229
Query: 119 HNGVRIGNMDLNELETPNINI--DGGLLEITNASFADAGEYECVVKSTVGKISTKTTVIV 176
NG I E + L + N +D G Y C + G+ + + V
Sbjct: 230 RNGKLI-------EENEKYILKGSNTELTVRNIINSDGGPYVCRATNKAGEDEKQAFLQV 282
Query: 177 EGPP 180
Sbjct: 283 FVQH 286
Score = 109 bits (275), Expect = 7e-27
Identities = 36/186 (19%), Positives = 67/186 (36%), Gaps = 13/186 (6%)
Query: 1 YAGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGN---LLISPVSRDDSGI 57
G + C P+ + G I S R + + G L I + +D+GI
Sbjct: 15 ELSVGESKFFTCTAIGEPESIDWYNPQGEKIISTQRVVVQKEGVRSRLTIYNANIEDAGI 74
Query: 58 YSCTATNVHGMDES-KGRLIVLHGPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYI 116
Y C AT+ G + L + + ++ + ++ C + V+
Sbjct: 75 YRCQATDAKGQTQEATVVLEIYQKL-TFREVVSPQEFKQGEDAEVVCRVSSSPAPAVS-- 131
Query: 117 WTHNGVRIGNMDLNELETPNINIDGGLLEITNASFADAGEYECVVK-STVGKISTKT-TV 174
W ++ + + + + L+I N + +D G Y C + G+I + V
Sbjct: 132 WLYHNEEVTTIS----DNRFAMLANNNLQILNINKSDEGIYRCEGRVEARGEIDFRDIIV 187
Query: 175 IVEGPP 180
IV PP
Sbjct: 188 IVNVPP 193
Score = 91.4 bits (227), Expect = 1e-20
Identities = 23/91 (25%), Positives = 35/91 (38%), Gaps = 9/91 (9%)
Query: 2 AGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKI-FENGNLLISPVSRDDSGIYSC 60
A G +T C +P+P W ++G +I + + N L + + D G Y C
Sbjct: 206 AERGEEMTFSCRASGSPEPAISWFRNGKLIEENEKYILKGSNTELTVRNIINSDGGPYVC 265
Query: 61 TATNVHGMDESKGRLIVLHGPSYYEQLPPKI 91
ATN G DE + L V +
Sbjct: 266 RATNKAGEDEKQAFLQV--------FVQHHH 288
>1f97_A Junction adhesion molecule; immunoglobulin superfamily,
beta-sandwich fold, cell adhesion; 2.50A {Mus musculus}
SCOP: b.1.1.1 b.1.1.4
Length = 212
Score = 116 bits (291), Expect = 7e-30
Identities = 36/199 (18%), Positives = 66/199 (33%), Gaps = 18/199 (9%)
Query: 4 EGGNVTIFCNPEAAPKPKFVWKK-----------DGNIIGSGGRRKIFENGNLLISPVSR 52
E ++ + C P+ WK + I R F + + S V+R
Sbjct: 15 ENESIKLTCTYSGFSSPRVEWKFVQGSTTALVCYNSQITAPYADRVTFSSSGITFSSVTR 74
Query: 53 DDSGIYSCTATNVHGMDESKGRLIVL-HGPSYYEQLPPKITIAAHRNLQLRCSAHTEELL 111
D+G Y+C + G + + + + P + ++ L CS H
Sbjct: 75 KDNGEYTCMVSEEGGQNYGEVSIHLTVLVPPSKPTISVPSSVTIGNRAVLTCSEHDGSPP 134
Query: 112 DVAYIWTHNGVRIGNMDLNEL-----ETPNINIDGGLLEITNASFADAGEYECVVKSTVG 166
Y W +G+ + D + + I+ G L + D+GEY C ++ G
Sbjct: 135 -SEYSWFKDGISMLTADAKKTRAFMNSSFTIDPKSGDLIFDPVTAFDSGEYYCQAQNGYG 193
Query: 167 KISTKTTVIVEGPPGLPGG 185
++ GG
Sbjct: 194 TAMRSEAAHMDAVELNVGG 212
>3oq3_B IFN-alpha/beta binding protein C12R; mousepox virus, moscow strain,
cytokine decoy RE virus/viral protein, type-1
interferon, soluble A/B-IFNR; HET: EPE; 2.10A
{Ectromelia virus}
Length = 329
Score = 119 bits (298), Expect = 1e-29
Identities = 36/191 (18%), Positives = 62/191 (32%), Gaps = 14/191 (7%)
Query: 1 YAGEGGNVTIFCN-PEAAPKPKFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYS 59
+ + ++C A W K+ + G + NL+I +DSG Y
Sbjct: 139 GTHDKYGIDLYCGILYAKHYNNITWYKNNQELIIDGTKYSQSGQNLIIHNPELEDSGRYD 198
Query: 60 CTATNVHGMDESKGRLIVL--------HGPSYYEQLPPKITIAAHRNLQLRCSAHTEELL 111
C ++ + + L PKI + + C+A + LL
Sbjct: 199 CYVHYDDVRIKNDIVVSRCKILTVIPSQDHRFKLILDPKINVTIGEPANITCTAVSTSLL 258
Query: 112 D--VAYIWTHNGVRIGNMDLNE--LETPNINIDGGLLEITNASFADAGE-YECVVKSTVG 166
V W + I +D + T + I L N + G Y C +
Sbjct: 259 VDDVLIDWENPSGWIIGLDFGVYSILTSSGGITEATLYFENVTEEYIGNTYTCRGHNYYF 318
Query: 167 KISTKTTVIVE 177
+ TTV++E
Sbjct: 319 DKTLTTTVVLE 329
Score = 91.0 bits (225), Expect = 4e-20
Identities = 51/292 (17%), Positives = 81/292 (27%), Gaps = 36/292 (12%)
Query: 1 YAGEGGNVTIFCNPEAAPKPKFV---------WKKDGNIIGSGGRRKIFENGNLLISPVS 51
A G + C P W+K G RR +NG+L I+ +
Sbjct: 40 MAALGEPFSAKCPPIEDSLLSHRYNDKDNVVNWEKIGKTRRPLNRR--VKNGDLWIANYT 97
Query: 52 RDDSG-IYSCTATNVHGMDESKGRLIVLHGPSYYEQLPPKITIAAHRNLQLRCSAHTEEL 110
+DS Y CT T +G + P ++ + L C
Sbjct: 98 SNDSHRRYLCTVTTKNGDCVQGIVRSHIRKPPSCIPETYELGTHDKYGIDLYCGI-LYAK 156
Query: 111 LDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEITNASFADAGEYECVVKSTVGKIST 170
W N + ++ + G L I N D+G Y+C V +I
Sbjct: 157 HYNNITWYKNNQEL------IIDGTKYSQSGQNLIIHNPELEDSGRYDCYVHYDDVRIKN 210
Query: 171 KTTVIVEGPPGLPGGVQVVEVHKTSATIQWTDGATNGRPIT-----HYKIIARTNWNSTW 225
V V + H+ + T G P + + W
Sbjct: 211 DIVVSRCKIL----TVIPSQDHRFKLILDPKINVTIGEPANITCTAVSTSLLVDDVLIDW 266
Query: 226 FNVSEHVIGKEVDRYTGRKEAS--------IENVLVPWSTYEFKVIAGNELG 269
N S +IG + Y+ + ENV + + N
Sbjct: 267 ENPSGWIIGLDFGVYSILTSSGGITEATLYFENVTEEYIGNTYTCRGHNYYF 318
>2v9r_A Roundabout homolog 1; proto-oncogene, differentiation,
phosphorylation, disease MU neuronal development,
immunoglobulin domain, chemotaxis; 2.00A {Homo sapiens}
PDB: 2v9q_A
Length = 212
Score = 115 bits (290), Expect = 1e-29
Identities = 47/192 (24%), Positives = 72/192 (37%), Gaps = 19/192 (9%)
Query: 1 YAGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGG-----RRKIFENGNLLISPV----- 50
+G T+ C E P P W K G + + R + +G+L +
Sbjct: 20 IVSKGEPATLNCKAEGRPTPTIEWYKGGERVETDKDDPRSHRMLLPSGSLFFLRIVHGRK 79
Query: 51 SRDDSGIYSCTATNVHGMDESKG-RLIVLHGPSYYEQLPPKITIAAHRNLQLRCSAHTEE 109
SR D G+Y C A N G S L V + Q P + +A + C
Sbjct: 80 SRPDEGVYVCVARNYLGEAVSHDASLEVAILRDDFRQNPSDVMVAVGEPAVMECQP-PRG 138
Query: 110 LLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEITNASFADAGEYECVVKSTVGKIS 169
+ W +G + + + I I GG L IT +DAG+Y CV + VG+
Sbjct: 139 HPEPTISWKKDGSPL------DDKDERITIRGGKLMITYTRKSDAGKYVCVGTNMVGERE 192
Query: 170 TKT-TVIVEGPP 180
++ + V P
Sbjct: 193 SEVAELTVLERP 204
Score = 93.0 bits (231), Expect = 8e-22
Identities = 28/83 (33%), Positives = 38/83 (45%), Gaps = 2/83 (2%)
Query: 2 AGEGGNVTIFCNP-EAAPKPKFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSC 60
G + C P P+P WKKDG+ + R G L+I+ + D+G Y C
Sbjct: 123 VAVGEPAVMECQPPRGHPEPTISWKKDGSPLDDKDERITIRGGKLMITYTRKSDAGKYVC 182
Query: 61 TATNVHGMDESK-GRLIVLHGPS 82
TN+ G ES+ L VL PS
Sbjct: 183 VGTNMVGERESEVAELTVLERPS 205
>2a38_A Titin; Z1Z2, structural protein; 2.00A {Homo sapiens} PDB: 1ya5_A
2f8v_A
Length = 194
Score = 114 bits (288), Expect = 1e-29
Identities = 43/192 (22%), Positives = 72/192 (37%), Gaps = 30/192 (15%)
Query: 2 AGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKI---FENG--NLLISPVSRDDSG 56
EG T + P P+ W +DG +I + + F +G L I V++ +SG
Sbjct: 17 VLEGSTATFEAHISGFPVPEVSWFRDGQVISTSTLPGVQISFSDGRAKLTIPAVTKANSG 76
Query: 57 IYSCTATNVHGMDESKGRLIVLHGPSYYEQLPPKI-------TIAAHRNLQLRCSAHTEE 109
YS ATN G S L+V + PP T+ ++L+
Sbjct: 77 RYSLKATNGSGQATSTAELLVKAETA-----PPNFVQRLQSMTVRQGSQVRLQVRVTGIP 131
Query: 110 LLDVAYIWTHNGVRIGNMDLNELETPNINI----DGGLLEITNASFADAGEYECVVKSTV 165
V + +G I + + I D L I A D+G Y ++V
Sbjct: 132 TPVV--KFYRDGAEI-------QSSLDFQISQEGDLYSLLIAEAYPEDSGTYSVNATNSV 182
Query: 166 GKISTKTTVIVE 177
G+ ++ ++V+
Sbjct: 183 GRATSTAELLVQ 194
Score = 55.5 bits (134), Expect = 6e-09
Identities = 16/100 (16%), Positives = 33/100 (33%), Gaps = 7/100 (7%)
Query: 86 QLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGL-- 143
Q + + + +V W +G I + L I+ G
Sbjct: 10 QPLQSVVVLEGSTATFEAHISGFPVPEV--SWFRDGQVI---STSTLPGVQISFSDGRAK 64
Query: 144 LEITNASFADAGEYECVVKSTVGKISTKTTVIVEGPPGLP 183
L I + A++G Y + G+ ++ ++V+ P
Sbjct: 65 LTIPAVTKANSGRYSLKATNGSGQATSTAELLVKAETAPP 104
>2v5t_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; phosphorylation,
immunoglobulin domain, membrane, glycoprote adhesion,
transmembrane; HET: NAG; 2.00A {Homo sapiens}
Length = 189
Score = 114 bits (287), Expect = 2e-29
Identities = 35/183 (19%), Positives = 61/183 (33%), Gaps = 22/183 (12%)
Query: 4 EGGNVTIFCNPEAAPKPKFVWKKDGNII--GSGGRRKIFENGNLLISPVSRDDSGIYSCT 61
+G + + C ++P P W + S R + N NL I +++ D GIY C
Sbjct: 16 QGEDAEVVCRVSSSPAPAVSWLYHNEEVTTISDNRFAMLANNNLQILNINKSDEGIYRCE 75
Query: 62 ATN-VHGMDESKGRLIVLHGP--SYYEQLPPKITIAAHRNLQLRCSAH-----TEELLDV 113
G + + +++++ P Q T + C A
Sbjct: 76 GRVEARGEIDFRDIIVIVNVPPAISMPQKSFNATAERGEEMTFSCRASGSPEPA------ 129
Query: 114 AYIWTHNGVRIGNMDLNELETPNINIDGGLLEITNASFADAGEYECVVKSTVGKISTKTT 173
W NG I + L+ L + N +D G Y C + G+ +
Sbjct: 130 -ISWFRNGKLIEENEKYILKG-----SNTELTVRNIINSDGGPYVCRATNKAGEDEKQAF 183
Query: 174 VIV 176
+ V
Sbjct: 184 LQV 186
Score = 92.9 bits (231), Expect = 5e-22
Identities = 23/79 (29%), Positives = 34/79 (43%), Gaps = 1/79 (1%)
Query: 1 YAGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKI-FENGNLLISPVSRDDSGIYS 59
A G +T C +P+P W ++G +I + + N L + + D G Y
Sbjct: 109 TAERGEEMTFSCRASGSPEPAISWFRNGKLIEENEKYILKGSNTELTVRNIINSDGGPYV 168
Query: 60 CTATNVHGMDESKGRLIVL 78
C ATN G DE + L V
Sbjct: 169 CRATNKAGEDEKQAFLQVF 187
Score = 45.5 bits (108), Expect = 1e-05
Identities = 15/103 (14%), Positives = 29/103 (28%), Gaps = 18/103 (17%)
Query: 85 EQLPPKITIAAHRNLQLRCSAH-----TEELLDVAYIWTHNGVRIGNMDLNELETPNINI 139
++ + ++ C W ++ + + N +
Sbjct: 6 REVVSPQEFKQGEDAEVVCRVSSSPAPA-------VSWLYHNEEVTTISDNRFAM----L 54
Query: 140 DGGLLEITNASFADAGEYECVVKSTVGKI--STKTTVIVEGPP 180
L+I N + +D G Y C + VIV PP
Sbjct: 55 ANNNLQILNINKSDEGIYRCEGRVEARGEIDFRDIIVIVNVPP 97
>2dbj_A Proto-oncogene tyrosine-protein kinase MER precursor; C-MER,
receptor tyrosine kinase mertk, FN3 domain, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 124
Score = 111 bits (278), Expect = 4e-29
Identities = 25/127 (19%), Positives = 42/127 (33%), Gaps = 6/127 (4%)
Query: 373 GPGPESEVVTIFSAEDMPQVAPQGV-FSRGFNSTAINVTWNPIELIRENIRGRLIGHRIK 431
G S + + E P VAP V +S +++ W + G L+G+RI
Sbjct: 1 GSSGSSGWILASTTEGAPSVAPLNVTVFLNESSDNVDIRWMKPP--TKQQDGELVGYRIS 58
Query: 432 YWKEDNPEETAVYYLSRTTRNWALIVGLQPDTKYYVKVMAYNNAGEGPESERYLERTYRK 491
+ + + + A I + V++ A G GP S+
Sbjct: 59 HVWQSAGISKELLEEVGQNGSRARISVQVHNATCTVRIAAVTRGGVGPFSDPVKIFI--- 115
Query: 492 APQKPPS 498
PS
Sbjct: 116 PAHSGPS 122
Score = 79.8 bits (197), Expect = 3e-18
Identities = 23/121 (19%), Positives = 40/121 (33%), Gaps = 3/121 (2%)
Query: 476 GEGPESERYLERTYRKAPQKPPSAVHIK-GINPTTVHVTWRYVSPSFEEEPIIGYKVRVW 534
G S L T AP P V + + V + W ++ ++GY++
Sbjct: 1 GSSGSSGWILASTTEGAPSVAPLNVTVFLNESSDNVDIRWMKPPTKQQDGELVGYRISHV 60
Query: 535 EVDQDMSRANDTIIPVGNTLDADIVDLSPGKRYHMRVLAFSNGGDGRMSSPAITFQMGEE 594
+S+ + N A I +R+ A + GG G S P + +
Sbjct: 61 WQSAGISKELLEEVG-QNGSRARISVQVHNATCTVRIAAVTRGGVGPFSDP-VKIFIPAH 118
Query: 595 K 595
Sbjct: 119 S 119
Score = 69.4 bits (170), Expect = 1e-14
Identities = 24/123 (19%), Positives = 42/123 (34%), Gaps = 4/123 (3%)
Query: 269 GYGEPSSPSPQYNTPADKPYQAPSRI-GGGGGKIGDLSISWEPLPREKQNAPNIYYKIFW 327
G S T P AP + ++ I W P ++Q+ + Y+I
Sbjct: 1 GSSGSSGWILAS-TTEGAPSVAPLNVTVFLNESSDNVDIRWMKPPTKQQDGELVGYRISH 59
Query: 328 RKKNDTEFQSETLKEYGNVGIAVVRIPSEFYYTEYEVKVQAINDVGPGPESEVVTIFSAE 387
++ + + N A I + + V++ A+ G GP S+ V IF
Sbjct: 60 VWQSAGISKELLEEVGQNGSRAR--ISVQVHNATCTVRIAAVTRGGVGPFSDPVKIFIPA 117
Query: 388 DMP 390
Sbjct: 118 HSG 120
Score = 45.6 bits (108), Expect = 3e-06
Identities = 22/113 (19%), Positives = 32/113 (28%), Gaps = 14/113 (12%)
Query: 179 PPGLPGGVQVVEVH-KTSATIQWT---DGATNGRPITHYKIIARTNWNSTWFNVSEHVIG 234
P P V V + I+W +G + Y+I + E V
Sbjct: 18 PSVAPLNVTVFLNESSDNVDIRWMKPPTKQQDGE-LVGYRISHVWQSAGISKELLEEVGQ 76
Query: 235 KEVDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPSPQYNTPADKP 287
A I V +T ++ A G G S P + PA
Sbjct: 77 NG-------SRARISV-QVHNATCTVRIAAVTRGGVGPFSDPV-KIFIPAHSG 120
>2y23_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin-
like; 2.50A {Homo sapiens}
Length = 312
Score = 115 bits (288), Expect = 2e-28
Identities = 33/200 (16%), Positives = 63/200 (31%), Gaps = 33/200 (16%)
Query: 4 EGGNVTIFCNPEAA-PKPKFVWKKDGNIIGSGGRRKIFENGN-----LLISPVSRDDSGI 57
E G V + E K + + I G + K+ + N + + + +D G
Sbjct: 121 EKGQVRFWMQAEKLSGNAKVNYIFNEKEIFEGPKYKMHIDRNTGIIEMFMEKLQDEDEGT 180
Query: 58 YSCTATNVHGMDESKGRLIVLHGPSYYEQL-----------------PPKITIAAHRNLQ 100
Y+ + + S L+ ++ + N+
Sbjct: 181 YTFQLQDGKATNHSTVVLVGDVFKKLQKEAEFQRQEWIRKQGPHFVEYLSWEVTGECNVL 240
Query: 101 LRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGL--LEITNASFADAGEYE 158
L+C + +W + I + G+ L IT S DAG YE
Sbjct: 241 LKCKV-ANIKKETHIVWYKDEREI-------SVDEKHDFKDGICTLLITEFSKKDAGIYE 292
Query: 159 CVVKSTVGKISTKTTVIVEG 178
++K GK ++ ++ E
Sbjct: 293 VILKDDRGKDKSRLKLVDEA 312
Score = 98.1 bits (244), Expect = 1e-22
Identities = 31/197 (15%), Positives = 60/197 (30%), Gaps = 19/197 (9%)
Query: 2 AGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGN---LLISPVSRDDSGIY 58
++ C + PK +F W KD R ++ GN + + DD GIY
Sbjct: 15 DDGVISLNFEC-DKMTPKSEFSWSKDYVSTEDSPRLEVESKGNKTKMTFKDLGMDDLGIY 73
Query: 59 SCTATNVHGMDESKGRLIV-LHGPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDV---- 113
SC T+ G+ S L T+ L + + +
Sbjct: 74 SCDVTDTDGIASSYLIDEEELKRLLALSHEHKFPTVPVKSELAVEILEKGQVRFWMQAEK 133
Query: 114 -----AYIWTHNGVRIGNMDLNELETPNINIDGGL--LEITNASFADAGEYECVVKSTVG 166
+ N I ++ +I+ + G+ + + D G Y ++
Sbjct: 134 LSGNAKVNYIFNEKEIFEGPKYKM---HIDRNTGIIEMFMEKLQDEDEGTYTFQLQDGKA 190
Query: 167 KISTKTTVIVEGPPGLP 183
+ ++ + L
Sbjct: 191 TNHSTVVLVGDVFKKLQ 207
>1tdq_A Tenascin-R; extracellular matrix, lecticans, tenascins,
protein-protein interactions, C-type lectin domain;
2.60A {Rattus norvegicus} SCOP: b.1.2.1 b.1.2.1 b.1.2.1
Length = 283
Score = 114 bits (286), Expect = 2e-28
Identities = 39/284 (13%), Positives = 82/284 (28%), Gaps = 39/284 (13%)
Query: 304 LSISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETLKEYGNVGIAVVR--IPSEFYYTE 361
+ W P A + + + T + + V+ P +
Sbjct: 31 AFVEWTPPR-----AKVDFILLKYGLVGGEG-GKTTFRLQPPLSQYSVQALRP----GSR 80
Query: 362 YEVKVQAINDVGPGPESEVVTIFSAEDMPQVAPQGVFSRGFNSTAINVTWNPIELIRENI 421
YEV + A+ S AP+ + +T++++ W+ E
Sbjct: 81 YEVSISAVRGTNESDASSTQFT-----TEIDAPKNLRVGSRTATSLDLEWDNSE------ 129
Query: 422 RGRLIGHRIKYWKEDN-PEETAVYYLSRTTRNWALIVGLQPDTKYYVKVMAYNNAGEGPE 480
+++ Y + + L P T+Y V + A N+ +
Sbjct: 130 -AEAQEYKVVYSTLAGEQYHEVLVPKGIGPTTKTTLTDLVPGTEYGVGISAVMNSKQSIP 188
Query: 481 SERYLERTYRKAPQKPPSAVHIKGINPTTVHVTWRYVSPSFEEEPIIGYKVRVWEVDQDM 540
+ R P + + + T++ + W S PI Y++
Sbjct: 189 ATM----NARTELD-SPRDLMVTASSETSISLIWT--KAS---GPIDHYRITFTPSS--- 235
Query: 541 SRANDTIIPVGNTLDADIVDLSPGKRYHMRVLAFSNGGDGRMSS 584
+ + + + DL PG Y + + A S+
Sbjct: 236 -GISSEVTVPRDRTSYTLTDLEPGAEYIISITAERGRQQSLEST 278
Score = 112 bits (281), Expect = 9e-28
Identities = 50/319 (15%), Positives = 95/319 (29%), Gaps = 48/319 (15%)
Query: 166 GKISTKTTVIVEGPPGLPGGVQVVEVHKTSATIQWTDGATNGRPITHYKIIARTNWNSTW 225
G + V P + V +V T A ++WT + +
Sbjct: 4 GISGGGGGIPV---IDGPTQILVRDVSDTVAFVEWTPPRA---KVDFILLKYGLVGGEGG 57
Query: 226 FNVSEHVIGKEVDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPSPQYNTPAD 285
+ S++ L P S YE + A + SS T D
Sbjct: 58 K--------TTFRLQPPLSQYSVQA-LRPGSRYEVSISAVRGTNESDASSTQFT--TEID 106
Query: 286 KPYQAPSRIGGGGGKIGDLSISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETLKEY-G 344
AP + G L + W+ A YK+ + ++ + + G
Sbjct: 107 ----APKNLRVGSRTATSLDLEWDN-----SEAEAQEYKVVYSTLAGEQYHEVLVPKGIG 157
Query: 345 NVGIAVVR--IPSEFYYTEYEVKVQAINDVGPGPESEVVTIFSAEDMPQVAPQGVFSRGF 402
+ +P TEY V + A+ + + + +A +P+ +
Sbjct: 158 PTTKTTLTDLVP----GTEYGVGISAVMNSKQSIPATM----NARTELD-SPRDLMVTAS 208
Query: 403 NSTAINVTWNPIELIRENIRGRLIGHRIKYWKEDNPEETAVYYLSRTTRNWALIVGLQPD 462
+ T+I++ W G + +RI + R + L+P
Sbjct: 209 SETSISLIWTKAS-------GPIDHYRITFTPSSGISSEVT---VPRDRTSYTLTDLEPG 258
Query: 463 TKYYVKVMAYNNAGEGPES 481
+Y + + A + ES
Sbjct: 259 AEYIISITAERGRQQSLES 277
Score = 101 bits (252), Expect = 6e-24
Identities = 35/192 (18%), Positives = 59/192 (30%), Gaps = 18/192 (9%)
Query: 393 APQGVFSRGFNSTAINVTWNPIELIRENIRGRLIGHRIKYWKEDNPEETAVYYLSRTTRN 452
P + R + T V W P R ++ +KY + L
Sbjct: 17 GPTQILVRDVSDTVAFVEWTPP-------RAKVDFILLKYGLVGGEGGKTTFRLQPPLSQ 69
Query: 453 WALIVGLQPDTKYYVKVMAYNNAGEGPESERYLERTYRKAPQKPPSAVHIKGINPTTVHV 512
+ L+P ++Y V + A E S T P + + T++ +
Sbjct: 70 -YSVQALRPGSRYEVSISAVRGTNESDASS-----TQFTTEIDAPKNLRVGSRTATSLDL 123
Query: 513 TWRYVSPSFEEEPIIGYKVRVWEVDQDMSRANDTIIPVGNTLDADIVDLSPGKRYHMRVL 572
W S E YKV + + +G T + DL PG Y + +
Sbjct: 124 EW---DNS--EAEAQEYKVVYSTLAGEQYHEVLVPKGIGPTTKTTLTDLVPGTEYGVGIS 178
Query: 573 AFSNGGDGRMSS 584
A N ++
Sbjct: 179 AVMNSKQSIPAT 190
Score = 70.2 bits (172), Expect = 2e-13
Identities = 34/232 (14%), Positives = 67/232 (28%), Gaps = 39/232 (16%)
Query: 156 EYECVVKS-TVGKISTKTTVIVEGPPGLPGGVQVVEVHKTSATIQWTDGATNGRPITHYK 214
YE + + S ++ P ++V TS ++W + YK
Sbjct: 80 RYEVSISAVRGTNESDASSTQFTTEIDAPKNLRVGSRTATSLDLEWD--NSEA-EAQEYK 136
Query: 215 IIARTNWNSTWFNVSEHVIGKEVDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPS 274
++ T + V + T + + LVP + Y + A P+
Sbjct: 137 VVYSTLAGEQYHEVLVPKGIGPTTKTT------LTD-LVPGTEYGVGISAVMNSKQSIPA 189
Query: 275 SPSPQYNTPADKPY------QAPSRIGGGGGKIGDLSISWEPLPREKQNAPNIYYKIFWR 328
+ + + T D P + + I S+ W + P +Y+I +
Sbjct: 190 TMNAR--TELDSPRDLMVTASSETSI----------SLIWTKA-----SGPIDHYRITFT 232
Query: 329 KKNDTEFQSETLKEYGNVGIAVVRIPSEFYYTEYEVKVQAINDVGPGPESEV 380
+ + + EY + + A ES V
Sbjct: 233 PSSGISSEVTV-----PRDRTSYTLTDLEPGAEYIISITAERGRQQSLESTV 279
Score = 57.1 bits (138), Expect = 4e-09
Identities = 36/185 (19%), Positives = 65/185 (35%), Gaps = 25/185 (13%)
Query: 100 QLRCSAHTEELLDVAYIWTH-----NGVRIGNMDLNELETPNINIDGGLLEITNASFAD- 153
LR + T LD+ W + ++ L + + + G+ T + D
Sbjct: 110 NLRVGSRTATSLDLE--WDNSEAEAQEYKVVYSTLAGEQYHEVLVPKGIGPTTKTTLTDL 167
Query: 154 -AG-EYECVVKS-TVGKISTKTTVIVEGPPGLPGGVQVVEVHKTSATIQWTDGATNGRPI 210
G EY + + K S T+ P + V +TS ++ WT +G PI
Sbjct: 168 VPGTEYGVGISAVMNSKQSIPATMNARTELDSPRDLMVTASSETSISLIWT--KASG-PI 224
Query: 211 THYKIIARTNWNSTWFNVSEHVIGKEVDRYTGRKEASIENVLVPWSTYEFKVIAGNELGY 270
HY+I + + E + ++ YT + + L P + Y + A
Sbjct: 225 DHYRITFTPSSGISS----EVTVPRDRTSYT------LTD-LEPGAEYIISITAERGRQQ 273
Query: 271 GEPSS 275
S+
Sbjct: 274 SLEST 278
Score = 52.5 bits (126), Expect = 1e-07
Identities = 15/93 (16%), Positives = 31/93 (33%), Gaps = 7/93 (7%)
Query: 496 PPSAVHIKGINPTTVHVTWRYVSPSFEEEPIIGYKVRVWEVDQDMSRANDTIIPVGNTLD 555
P+ + ++ ++ T V W P + ++ V + + +
Sbjct: 17 GPTQILVRDVSDTVAFVEWT--PPR---AKVDFILLKYGLVGGEGGKTTFRL--QPPLSQ 69
Query: 556 ADIVDLSPGKRYHMRVLAFSNGGDGRMSSPAIT 588
+ L PG RY + + A + SS T
Sbjct: 70 YSVQALRPGSRYEVSISAVRGTNESDASSTQFT 102
>2vr9_A Roundabout 1, ROBO; immunoglobulin-like domain, AXON guidance, cell
adhesion, immunoglobulin domain; 3.2A {Drosophila
melanogaster} PDB: 2vra_A*
Length = 217
Score = 111 bits (280), Expect = 3e-28
Identities = 47/197 (23%), Positives = 72/197 (36%), Gaps = 18/197 (9%)
Query: 1 YAGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGG---RRKIFENGNLL----ISPVSRD 53
+ T+ C E P+P W KDG + + R F++G L +
Sbjct: 20 VVKKNEPATLNCKVEGKPEPTIEWFKDGEPVSTNEKKSHRVQFKDGALFFYRTMQGKKEQ 79
Query: 54 DSGIYSCTATNVHGMDES-KGRLIVLHGPSYYEQLPPKITIAAHRNLQLRC---SAHTEE 109
D G Y C A N G S L + + P +A L C E
Sbjct: 80 DGGEYWCVAKNRVGQAVSRHASLQIAVLRDDFRVEPKDTRVAKGETALLECGPPKGIPE- 138
Query: 110 LLDVAYIWTHNGVRI-GNMDLNELETPNINI-DGGLLEITNASFADAGEYECVVKSTVGK 167
IW +GV + ++ + + I DGG L I+N D G Y+C+ ++ VG
Sbjct: 139 ---PTLIWIKDGVPLDDLKAMSFGASSRVRIVDGGNLLISNVEPIDEGNYKCIAQNLVGT 195
Query: 168 I-STKTTVIVEGPPGLP 183
S+ +IV+
Sbjct: 196 RESSYAKLIVQVKAAAH 212
>2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion,
membrane, development protein; HET: NAG; 1.95A
{Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A*
Length = 388
Score = 116 bits (291), Expect = 3e-28
Identities = 37/178 (20%), Positives = 58/178 (32%), Gaps = 21/178 (11%)
Query: 4 EGGNVTIFCNPEAAPKPKFVWKKDGNIIGSG-----GRRKIFENGNLLISPVSRDDSGIY 58
+++ C + P P F W K R +G L+I +DSG Y
Sbjct: 226 VAHTISLLCPAQGFPAPSFRWYKFIEGTTRKQAVVLNDRVKQVSGTLIIKDAVVEDSGKY 285
Query: 59 SCTATNVHGMDESKGRLIVLHGPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWT 118
C N G + + L V P + PP T+ R C + V W
Sbjct: 286 LCVVNNSVGGESVETVLTV-TAPLSAKIDPPTQTVDFGRPAVFTCQYTGNPIKTV--SWM 342
Query: 119 HNGVRIGNMDLNELETPNINIDGGLLEITNASFADAGEYECVVKSTVGKISTKTTVIV 176
+G IG+ +L I + D G Y+C V++ + +
Sbjct: 343 KDGKAIGH-------------SESVLRIESVKKEDKGMYQCFVRNDRESAEASAELKL 387
Score = 110 bits (276), Expect = 3e-26
Identities = 40/243 (16%), Positives = 65/243 (26%), Gaps = 37/243 (15%)
Query: 1 YAGEGGNVTIFCNPEAA---PKPKFVWKKDGNIIG-----SGGRRKIFENGNLLISPVSR 52
+ G + I C + W D G+ + +G L I V
Sbjct: 114 HVIRGNSAVIKCLIPSFVADFVEVVSWHTDEEENYFPGAEYDGKYLVLPSGELHIREVGP 173
Query: 53 DDS-GIYSCTATNVHGMDESKGRLIVL---------HGPSYYEQLPPKITIAAHRNLQLR 102
+D Y C + + P + + + + L
Sbjct: 174 EDGYKSYQCRTKHRLTGETRLSATKGRLVITEPISSSAPRTPALVQKPLELMVAHTISLL 233
Query: 103 CSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEITNASFADAGEYECVVK 162
C A W + + G L I +A D+G+Y CVV
Sbjct: 234 CPAQGFPAPSF--RWYKFIEGT-TRKQAVVLNDRVKQVSGTLIIKDAVVEDSGKYLCVVN 290
Query: 163 STVGKISTKTTVIVEGPPGLPGGVQVVEVHKTSA-------------TIQWTDGATNGRP 209
++VG S +T + V P V T+ W +G+
Sbjct: 291 NSVGGESVETVLTVTAPLSAKIDPPTQTVDFGRPAVFTCQYTGNPIKTVSWM---KDGKA 347
Query: 210 ITH 212
I H
Sbjct: 348 IGH 350
Score = 98.5 bits (245), Expect = 3e-22
Identities = 38/191 (19%), Positives = 66/191 (34%), Gaps = 16/191 (8%)
Query: 4 EGGNVTIFCNPEAAPKPKFVW-KKDGNIIGSG-GRRKIFENGNLLISPVS------RDDS 55
I C P P+ +W + DG +G G R+I +G L+ P +
Sbjct: 18 NSTGAEIECKASGNPMPEIIWIRSDGTAVGDVPGLRQISSDGKLVFPPFRAEDYRQEVHA 77
Query: 56 GIYSCTATNVHGMDESKGRLIVLHGPSYYEQLPPKITIAAHRNLQLRCSA--HTEELLDV 113
+Y+C A N G S+ + YYE K + + ++C + ++V
Sbjct: 78 QVYACLARNQFGSIISRDVHVRAVVAQYYEADVNKEHVIRGNSAVIKCLIPSFVADFVEV 137
Query: 114 AYIWTHNGVRIGNMDLNELETPNINIDGGLLEITNASFADA-GEYECVVKSTVG---KIS 169
W + E + + + G L I D Y+C K + ++S
Sbjct: 138 -VSWHTDEEEN-YFPGAEYDGKYLVLPSGELHIREVGPEDGYKSYQCRTKHRLTGETRLS 195
Query: 170 TKTTVIVEGPP 180
+V P
Sbjct: 196 ATKGRLVITEP 206
Score = 72.3 bits (177), Expect = 9e-14
Identities = 19/77 (24%), Positives = 24/77 (31%), Gaps = 7/77 (9%)
Query: 1 YAGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSC 60
G C P W KDG IG L I V ++D G+Y C
Sbjct: 318 TVDFGRPAVFTCQYTGNPIKTVSWMKDGKAIGH-------SESVLRIESVKKEDKGMYQC 370
Query: 61 TATNVHGMDESKGRLIV 77
N E+ L +
Sbjct: 371 FVRNDRESAEASAELKL 387
Score = 48.4 bits (115), Expect = 4e-06
Identities = 18/120 (15%), Positives = 33/120 (27%), Gaps = 13/120 (10%)
Query: 80 GPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINI 139
GP + ++ +I + ++ C A + IW + + ++
Sbjct: 3 GPVFLKEPTNRIDFSNSTGAEIECKASGNPM--PEIIWIRSDGTA----VGDVPGLRQIS 56
Query: 140 DGGLLEITNAS------FADAGEYECVVKSTVGKI-STKTTVIVEGPPGLPGGVQVVEVH 192
G L A Y C+ ++ G I S V V V
Sbjct: 57 SDGKLVFPPFRAEDYRQEVHAQVYACLARNQFGSIISRDVHVRAVVAQYYEADVNKEHVI 116
>1qz1_A Neural cell adhesion molecule 1, 140 kDa isoform; IG modules, NCAM;
2.00A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4
PDB: 1ie5_A
Length = 291
Score = 113 bits (283), Expect = 5e-28
Identities = 37/183 (20%), Positives = 68/183 (37%), Gaps = 18/183 (9%)
Query: 4 EGGNVTIFCNPEAAPKPKFVWKKDGNII--GSGGRRKIFENGNLLISPVSRDDSGIYSCT 61
EG + I C+ ++ P +WK G + R + N L I + + D G Y C
Sbjct: 114 EGEDAVIVCDVVSSLPPTIIWKHKGRDVILKKDVRFIVLSNNYLQIRGIKKTDEGTYRCE 173
Query: 62 ATNVHGMDESKGRLIV-LHGPSYYEQLPPKITIAAH--RNLQLRCSAHTEELLDVAY--- 115
+ + + + V ++ P + + A+ +++ L C A +
Sbjct: 174 GRILARGEINFKDIQVIVNVPPTVQARQSIVNATANLGQSVTLVCDAD-------GFPEP 226
Query: 116 --IWTHNGVRIGNMDLNELETPNINIDGGLLEITNASFADAGEYECVVKSTVGKISTKTT 173
WT +G I + + E + D L I N D EY C+ ++ G+
Sbjct: 227 TMSWTKDGEPI-ENEEEDDEKHIFSDDSSELTIRNVDKNDEAEYVCIAENKAGEQDASIH 285
Query: 174 VIV 176
+ V
Sbjct: 286 LKV 288
Score = 99.6 bits (248), Expect = 2e-23
Identities = 32/187 (17%), Positives = 49/187 (26%), Gaps = 17/187 (9%)
Query: 4 EGGNVTIFCNPEAAPK-PKFVWKKDGN--IIGSGGRRKIFEN----GNLLISPVSRDDSG 56
G + C K W + + R + N L I + DD+G
Sbjct: 16 VGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDDSSTLTIYNANIDDAG 75
Query: 57 IYSCTATNVHGMDES-KGRLIVLHGPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAY 115
IY C T G + + + P + + C + +
Sbjct: 76 IYKCVVTAEDGTQSEATVNVKIFQKLMFKNA-PTPQEFKEGEDAVIVCDVVSSLPPTII- 133
Query: 116 IWTHNGVRIGNMDLNELETPNINIDGGLLEITNASFADAGEYECVVKSTVGK--ISTKTT 173
W H G + + L+I D G Y C +
Sbjct: 134 -WKHKGRDVILKKDVRFIV----LSNNYLQIRGIKKTDEGTYRCEGRILARGEINFKDIQ 188
Query: 174 VIVEGPP 180
VIV PP
Sbjct: 189 VIVNVPP 195
Score = 82.6 bits (204), Expect = 1e-17
Identities = 23/83 (27%), Positives = 35/83 (42%), Gaps = 5/83 (6%)
Query: 1 YAGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGG-----RRKIFENGNLLISPVSRDDS 55
A G +VT+ C+ + P+P W KDG I + ++ L I V ++D
Sbjct: 207 TANLGQSVTLVCDADGFPEPTMSWTKDGEPIENEEEDDEKHIFSDDSSELTIRNVDKNDE 266
Query: 56 GIYSCTATNVHGMDESKGRLIVL 78
Y C A N G ++ L V
Sbjct: 267 AEYVCIAENKAGEQDASIHLKVF 289
>1rhf_A Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3 family, cellular
adhesion, ligand-independent DIME mutational analysis,
transferase; HET: EPE; 1.96A {Homo sapiens} SCOP:
b.1.1.1 b.1.1.4
Length = 182
Score = 109 bits (275), Expect = 5e-28
Identities = 37/181 (20%), Positives = 71/181 (39%), Gaps = 21/181 (11%)
Query: 4 EGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFE-----NGNLLISPVSRDDSGIY 58
+G V + C+ E +P W KDG ++ + + I G L + V R D+G Y
Sbjct: 16 QGQPVKLNCSVEGMEEPDIQWVKDGAVVQNLDQLYIPVSEQHWIGFLSLKSVERSDAGRY 75
Query: 59 SCTATNVHGMDESKGRLIVLHGPSYYEQLPPKITIAAHRNLQLRCSAH-TEELLDVAYIW 117
C + + S+ + + G ++ P + + + QL C A E + + W
Sbjct: 76 WCQVEDGGETEISQPVWLTVEGVPFFTVEPKDLAVPPNAPFQLSCEAVGPPEPVTIV--W 133
Query: 118 THNGVRIGNMDLNELETPNINIDGGLLEITNASFADAGEYECVVKSTVGKISTKT-TVIV 176
+IG + +L +T + + + C + G S++T TV +
Sbjct: 134 WRGTTKIGGPAPSPS----------VLNVTGVT--QSTMFSCEAHNLKGLASSRTATVHL 181
Query: 177 E 177
+
Sbjct: 182 Q 182
Score = 61.4 bits (149), Expect = 3e-11
Identities = 14/79 (17%), Positives = 27/79 (34%), Gaps = 7/79 (8%)
Query: 2 AGEGGNVTIFCNPEAAPKPKFV-WKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSC 60
+ C P+P + W + IG +++ S ++SC
Sbjct: 110 VPPNAPFQLSCEAVGPPEPVTIVWWRGTTKIGGP------APSPSVLNVTGVTQSTMFSC 163
Query: 61 TATNVHGMDESKGRLIVLH 79
A N+ G+ S+ + L
Sbjct: 164 EAHNLKGLASSRTATVHLQ 182
>1ry7_B FGFR-3, fibroblast growth factor receptor 3; FGF-FGFR complex, beta
trefoil, IG domain, growth factor/growth factor receptor
complex; 3.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4
Length = 334
Score = 114 bits (286), Expect = 5e-28
Identities = 42/195 (21%), Positives = 69/195 (35%), Gaps = 20/195 (10%)
Query: 4 EGGNVTIFCNPEAAPKPKFVWKKDGNIIGS----GGRRKIFENGNLLISPVSRDDSGIYS 59
V C P P W K+G GG + + +L++ V D G Y+
Sbjct: 137 AANTVRFRCPAAGNPTPSISWLKNGREFRGEHRIGGIKLRHQQWSLVMESVVPSDRGNYT 196
Query: 60 CTATNVHGMDESKGRLIVL----HGPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAY 115
C N G L VL H P LP T +++ C +++ +
Sbjct: 197 CVVENKFGSIRQTYTLDVLERSPHRPILQAGLPANQTAVLGSDVEFHCKVYSDAQPHI-- 254
Query: 116 IWTH----NGVRIGN------MDLNELETPNINIDGGLLEITNASFADAGEYECVVKSTV 165
W NG ++G L + + +L + N +F DAGEY C+ +++
Sbjct: 255 QWLKHVEVNGSKVGPDGTPYVTVLKTAGANTTDKELEVLSLHNVTFEDAGEYTCLAGNSI 314
Query: 166 GKISTKTTVIVEGPP 180
G ++V
Sbjct: 315 GFSHHSAWLVVLPAE 329
Score = 104 bits (261), Expect = 9e-25
Identities = 48/259 (18%), Positives = 75/259 (28%), Gaps = 59/259 (22%)
Query: 2 AGEGGNVTIFCNPEAA-PKPKFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSC 60
G G V + C P P VW KDG + R + L + S +DSG YSC
Sbjct: 20 FGSGDAVELSCPPPGGGPMGPTVWVKDGTGLVPSERVLVG-PQRLQVLNASHEDSGAYSC 78
Query: 61 TATNVHGM---------------------DESKGRLIVLHGPSYYEQL---PPKITIAAH 96
+ DE++ + P + + + A
Sbjct: 79 RQRLTQRVLCHFSVRVTDAPSSGDDEDGEDEAEDTGVDTGAPYWTRPERMDKKLLAVPAA 138
Query: 97 RNLQLRCSAH-----TEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEITNASF 151
++ RC A + W NG + + + L + +
Sbjct: 139 NTVRFRCPAAGNPTPS-------ISWLKNGREFRGE--HRIGGIKLRHQQWSLVMESVVP 189
Query: 152 ADAGEYECVVKSTVGKISTKTTVIVEGPPGLPGGVQVVEVHKTSA--------------- 196
+D G Y CVV++ G I T+ V +Q +A
Sbjct: 190 SDRGNYTCVVENKFGSIRQTYTLDVLERSPHRPILQAGLPANQTAVLGSDVEFHCKVYSD 249
Query: 197 ---TIQWT-DGATNGRPIT 211
IQW NG +
Sbjct: 250 AQPHIQWLKHVEVNGSKVG 268
Score = 75.4 bits (185), Expect = 6e-15
Identities = 23/93 (24%), Positives = 33/93 (35%), Gaps = 16/93 (17%)
Query: 2 AGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGS----------------GGRRKIFENGNL 45
A G +V C + +P W K + GS G E L
Sbjct: 234 AVLGSDVEFHCKVYSDAQPHIQWLKHVEVNGSKVGPDGTPYVTVLKTAGANTTDKELEVL 293
Query: 46 LISPVSRDDSGIYSCTATNVHGMDESKGRLIVL 78
+ V+ +D+G Y+C A N G L+VL
Sbjct: 294 SLHNVTFEDAGEYTCLAGNSIGFSHHSAWLVVL 326
Score = 56.5 bits (136), Expect = 8e-09
Identities = 15/101 (14%), Positives = 35/101 (34%), Gaps = 10/101 (9%)
Query: 81 PSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYI-WTHNGVRIGNMDLNELETPNINI 139
P ++ + ++L C + W +G + + + + +
Sbjct: 8 PGPEPGQQEQLVFGSGDAVELSCPP--PGGGPMGPTVWVKDGTGL-------VPSERVLV 58
Query: 140 DGGLLEITNASFADAGEYECVVKSTVGKISTKTTVIVEGPP 180
L++ NAS D+G Y C + T + + + + P
Sbjct: 59 GPQRLQVLNASHEDSGAYSCRQRLTQRVLCHFSVRVTDAPS 99
>2y25_A Myomesin; structural protein, sarcomere, M-BAND,
immunoglobulin-like D; 3.50A {Homo sapiens}
Length = 317
Score = 113 bits (284), Expect = 8e-28
Identities = 36/201 (17%), Positives = 66/201 (32%), Gaps = 22/201 (10%)
Query: 4 EGGNVTIFCNPEAAPK-PKFVWKKDGNIIGSGGRRKIFENGN-LLISPVSRDDSGIYSCT 61
NV + C K VW KD I + + LLI+ S+ D+GIY
Sbjct: 20 GECNVLLKCKVANIKKETHIVWYKDEREISVDEKHDFKDGICTLLITEFSKKDAGIYEVI 79
Query: 62 ATNVHGMDESKGRLIVLHGPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAY------ 115
+ G D+S+ +L+ K + +L+++ +A +L
Sbjct: 80 LKDDRGKDKSRLKLVD-EAFKELMMEVCKKIALSATDLKIQSTAEGIQLYSFVTYYVEDL 138
Query: 116 --IWTHNGVRIGNMDLNELETPNINI----DGGLLEITNASFADAGEYECVVKSTVGKIS 169
W+HNG I + + + L+I + D G+Y +
Sbjct: 139 KVNWSHNGSAI-------RYSDRVKTGVTGEQIWLQINEPTPNDKGKYVMELFDGKTGHQ 191
Query: 170 TKTTVIVEGPPGLPGGVQVVE 190
+ + Q ++
Sbjct: 192 KTVDLSGQAYDEAYAEFQRLK 212
Score = 107 bits (268), Expect = 9e-26
Identities = 39/204 (19%), Positives = 60/204 (29%), Gaps = 37/204 (18%)
Query: 4 EGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGN---LLISPVSRDDSGIYSC 60
G K W +G+ I R K G L I+ + +D G Y
Sbjct: 122 AEGIQLYSFVTYYVEDLKVNWSHNGSAIRYSDRVKTGVTGEQIWLQINEPTPNDKGKYVM 181
Query: 61 TATNVHGMDESKGRLIVL--------------------HGPSYYEQLPPKITIAAHRNLQ 100
+ + L + LP +TI + L
Sbjct: 182 ELFDGKTGHQKTVDLSGQAYDEAYAEFQRLKQAAIAEKNRARVLGGLPDVVTIQEGKALN 241
Query: 101 LRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINI-----DGGLLEITNASFADAG 155
L C+ + +V W N + + N+ I S AD+G
Sbjct: 242 LTCNVWGDPPPEV--SWLKNEKAL-------ASDDHCNLKFEAGRTAYFTINGVSTADSG 292
Query: 156 EYECVVKSTVGKISTKTTVIVEGP 179
+Y VVK+ G ++ TV V P
Sbjct: 293 KYGLVVKNKYGSETSDFTVSVFIP 316
Score = 56.8 bits (137), Expect = 7e-09
Identities = 18/94 (19%), Positives = 36/94 (38%), Gaps = 8/94 (8%)
Query: 88 PPKITIAAHRNLQLRCSAH-TEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEI 146
+ N+ L+C ++ + +W + I + ++ + L I
Sbjct: 13 YLSWEVTGECNVLLKCKVANIKKETHI--VWYKDEREISVDEKHDFKD-----GICTLLI 65
Query: 147 TNASFADAGEYECVVKSTVGKISTKTTVIVEGPP 180
T S DAG YE ++K GK ++ ++ E
Sbjct: 66 TEFSKKDAGIYEVILKDDRGKDKSRLKLVDEAFK 99
>3k0w_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1,
isoform 2; hydrolase, immunoglobulin domain, nucleus,
protease; 2.80A {Homo sapiens}
Length = 218
Score = 110 bits (276), Expect = 1e-27
Identities = 37/205 (18%), Positives = 62/205 (30%), Gaps = 38/205 (18%)
Query: 4 EGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTAT 63
G V + C P ++ W K I +G L+ + V D+G Y C
Sbjct: 32 AGQFVKLCCRATGHPFVQYQWFKMNKEIPNG------NTSELIFNAVHVKDAGFYVCRVN 85
Query: 64 NVHGMDESK-GRLIVLHGPSYYEQL--------------PPKITIAAHRNLQLRCSAHTE 108
N + S+ +L V P +++ P + L L+C A
Sbjct: 86 NNFTFEFSQWSQLDVCDIPESFQRSVDGVSESKLQICVEPTSQKLMPGSTLVLQCVAVGS 145
Query: 109 ELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEITNASFADAGEYECVVKSTVGKI 168
+ Y W N + + + L + G Y C V +
Sbjct: 146 PIPH--YQWFKNELPLTHET------------KKLYMVPYVDLEHQGTYWCHVYNDRDSQ 191
Query: 169 -STKTTVIVEGPPGL--PGGVQVVE 190
S K +I++ L P +
Sbjct: 192 DSKKVEIIIDELNNLGHPDNKEQTT 216
Score = 73.4 bits (180), Expect = 5e-15
Identities = 15/94 (15%), Positives = 31/94 (32%), Gaps = 7/94 (7%)
Query: 4 EGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTAT 63
G + + C +P P + W K+ + ++ ++ V + G Y C
Sbjct: 132 PGSTLVLQCVAVGSPIPHYQWFKNELPLTHETKK------LYMVPYVDLEHQGTYWCHVY 185
Query: 64 NVHGMDESKGRLIVLHGPSYYEQLPPKITIAAHR 97
N +SK I++ + P +
Sbjct: 186 NDRDSQDSKKVEIIIDELNNLGH-PDNKEQTTDQ 218
>3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical
bundle cytokine, hematopoietic cytokine-receptor
complex, cell surface, EXTR complex; 7.80A {Homo
sapiens}
Length = 527
Score = 115 bits (288), Expect = 2e-27
Identities = 34/285 (11%), Positives = 74/285 (25%), Gaps = 36/285 (12%)
Query: 4 EGGNVTIFCNPEAA-PKPKFVWKKDGNIIGSG---------GRRKIFENGNLLISPVSRD 53
G + I C W+ + + G R + +S V+R+
Sbjct: 241 VGEPLWIRCKAVHVNHGFGLTWELENKALEEGNYFEMSTYSTNRTMIRILFAFVSSVARN 300
Query: 54 DSGIYSCTATNVHGMDESKGRLIVLHGPS-YYEQLPPKITIAAHRNLQLRCSAHTEELLD 112
D+G Y+C+++ + ++ I + +
Sbjct: 301 DTGYYTCSSSKHPS---QSALVTIVEKGFINATNSSEDYEIDQYEEFCFSVRFKAYPQIR 357
Query: 113 VAYIWTHNGVRIGNMDLNELETPNINIDGGLLEITNASFADAGEYECVVKSTVGKISTKT 172
WT + +G + GEY ++ + +
Sbjct: 358 C--TWTFSRKSFPC-------EQKGLDNGYSISKFCNHKHQPGEYIFHAENDDAQFTKMF 408
Query: 173 TVIVEGPPGLPGGVQVVEVHKTSATIQWTDGATNGRP---ITHYKIIARTNWNSTWFNVS 229
T+ + P V +++ ++G P T K ++ +
Sbjct: 409 TLNIRRKP-------QVLAEASASQASCF---SDGYPLPSWTWKKCSDKSPNCTEEITEG 458
Query: 230 EHVIGKEVDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPS 274
+ +S N+ + K A N LG +
Sbjct: 459 VWNRKANRKVFGQWVSSSTLNMSEAIKGFLVKCCAYNSLGTSCET 503
Score = 106 bits (266), Expect = 2e-24
Identities = 20/187 (10%), Positives = 43/187 (22%), Gaps = 20/187 (10%)
Query: 2 AGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCT 61
+ +A P+ + W ++ + ++ + G Y
Sbjct: 338 IDQYEEFCFSVRFKAYPQIRCTWTFSRKSFPCE-QKGLDNGYSISKFCNHKHQPGEYIFH 396
Query: 62 ATNVHGMDESKGRLIVLHGPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNG 121
A N L + + P++ A Q C + L W
Sbjct: 397 AENDDAQFTKMFTLNI--------RRKPQVLAEA-SASQASCFSDGYPLPSW--TWKKCS 445
Query: 122 VRIGNMDLNELETPNINI--------DGGLLEITNASFADAGEYECVVKSTVGKISTKTT 173
+ N E + + +C +++G
Sbjct: 446 DKSPNCTEEITEGVWNRKANRKVFGQWVSSSTLNMSEAIKGFLVKCCAYNSLGTSCETIL 505
Query: 174 VIVEGPP 180
+ GP
Sbjct: 506 LNSPGPF 512
Score = 94.4 bits (234), Expect = 2e-20
Identities = 20/236 (8%), Positives = 59/236 (25%), Gaps = 29/236 (12%)
Query: 4 EGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGN--LLISPVSRDDSGIYSCT 61
++T+ +A +W + + + G ++I ++ +G Y
Sbjct: 62 VSASITLQVLVDAPGNISCLWVFKHSSLNCQPHFDLQNRGVVSMVILKMTETQAGEYLLF 121
Query: 62 ATNVHGMDESKGRLIVLHGPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNG 121
+ + + + L L C + + V W
Sbjct: 122 IQSEATNYTILFTVSIRNTL--LYTLRRPYFRKMENQDALVCISESVPEPIV--EWVLCD 177
Query: 122 VRIGNMDLNELETPNINIDGGLLEITNASFADAGEYECVVKSTVGKISTKT-TVIVEGPP 180
+ + E + C ++ +G+ T+ T+ + P
Sbjct: 178 SQG-------ESCKEESPAVVKKEEKVLHELFGTDIRCCARNELGRECTRLFTIDLNQTP 230
Query: 181 GLPGGVQVVEVHKT------------SATIQWTDGATNGRPITHYKIIARTNWNST 224
++V + + W + + + +++
Sbjct: 231 QTTLPQLFLKVGEPLWIRCKAVHVNHGFGLTWE---LENKALEEGNYFEMSTYSTN 283
Score = 72.4 bits (177), Expect = 2e-13
Identities = 18/156 (11%), Positives = 42/156 (26%), Gaps = 11/156 (7%)
Query: 44 NLLISPVSRDDSGIYSCTATNVHGMDESKGRLIVLHGPSYYEQLPPKITIAAHRNLQLRC 103
N + S S Y + + + L + YE + + ++ L+
Sbjct: 16 NHKNNDSSVGKSSSYPMVSESPEDLGC---ALRPQSSGTVYE--AAAVEVDVSASITLQV 70
Query: 104 SAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEITNASFADAGEYECVVKS 163
+ +W + +L+ + + I + AGEY ++S
Sbjct: 71 LVDAPGNISC--LWVFKHSSLNCQPHFDLQNRGV----VSMVILKMTETQAGEYLLFIQS 124
Query: 164 TVGKISTKTTVIVEGPPGLPGGVQVVEVHKTSATIQ 199
+ TV + + +
Sbjct: 125 EATNYTILFTVSIRNTLLYTLRRPYFRKMENQDALV 160
Score = 58.2 bits (140), Expect = 5e-09
Identities = 16/107 (14%), Positives = 25/107 (23%), Gaps = 14/107 (13%)
Query: 4 EGGNVTIFCNPEAAPKPKFVWKK-------DGNIIGSGGRRKIFEN-------GNLLISP 49
E C + P P + WKK I G + + ++
Sbjct: 421 EASASQASCFSDGYPLPSWTWKKCSDKSPNCTEEITEGVWNRKANRKVFGQWVSSSTLNM 480
Query: 50 VSRDDSGIYSCTATNVHGMDESKGRLIVLHGPSYYEQLPPKITIAAH 96
+ C A N G L + + K H
Sbjct: 481 SEAIKGFLVKCCAYNSLGTSCETILLNSPGPFPFIQDGGTKHHHHHH 527
>3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical
bundle cytokine, CY receptor complex, extracellular
complex; HET: NAG; 4.30A {Homo sapiens}
Length = 423
Score = 114 bits (285), Expect = 3e-27
Identities = 20/187 (10%), Positives = 51/187 (27%), Gaps = 21/187 (11%)
Query: 4 EGGNVTIFCNP-EAAPKPKFVWKKDGNIIGSGGRRKI---------FENGNLLISPVSRD 53
G + I C W+ + + G ++ +S V+R+
Sbjct: 241 VGEPLWIRCKAVHVNHGFGLTWELENKALEEGNYFEMSTYSTNRTMIRILFAFVSSVARN 300
Query: 54 DSGIYSCTATNVHGMDESKGRLIVLHGPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDV 113
D+G Y+C+++ + ++ + + + S + +
Sbjct: 301 DTGYYTCSSSKHPS---QSALVTIVE-KGFINATNSSEDYEIDQYEEFCFSVRFKAYPQI 356
Query: 114 AYIWTHNGVRIGNMDLNELETPNINIDGGLLEITNASFADAGEYECVVKSTVGKISTKTT 173
WT + +G + GEY ++ + + T
Sbjct: 357 RCTWTFSRKSFPC-------EQKGLDNGYSISKFCNHKHQPGEYIFHAENDDAQFTKMFT 409
Query: 174 VIVEGPP 180
+ +
Sbjct: 410 LNIRSGT 416
Score = 94.0 bits (233), Expect = 1e-20
Identities = 16/179 (8%), Positives = 46/179 (25%), Gaps = 13/179 (7%)
Query: 4 EGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFEN--GNLLISPVSRDDSGIYSCT 61
++T+ +A +W + + + +++I ++ +G Y
Sbjct: 62 VSASITLQVLVDAPGNISCLWVFKHSSLNCQPHFDLQNRGVVSMVILKMTETQAGEYLLF 121
Query: 62 ATNVHGMDESKGRLIVLHGPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNG 121
+ + + + L L C + + V W
Sbjct: 122 IQSEATNYTILFTVSIRNTL--LYTLRRPYFRKMENQDALVCISESVPEPIV--EWVLCD 177
Query: 122 VRIGNMDLNELETPNINIDGGLLEITNASFADAGEYECVVKSTVGKISTKTTVIVEGPP 180
+ + E + + + C ++ +G+ T+ I
Sbjct: 178 SQG----ESCKEESPAVVKKEEKVLHE---LFGTDIRCCARNELGRECTRLFTIDLNQT 229
Score = 77.0 bits (189), Expect = 4e-15
Identities = 29/227 (12%), Positives = 57/227 (25%), Gaps = 26/227 (11%)
Query: 44 NLLISPVSRDDSGIYSCTATNVHGMDESKGRLIVLHGPSYYEQLPPKITIAAHRNLQLRC 103
N + S S Y + + + L + YE + + ++ L+
Sbjct: 16 NHKNNDSSVGKSSSYPMVSESPEDLG---CALRPQSSGTVYE--AAAVEVDVSASITLQV 70
Query: 104 SAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEITNASFADAGEYECVVKS 163
+ +W + +L+ N + I + AGEY ++S
Sbjct: 71 LVDAPGNISC--LWVFKHSSLNCQPHFDLQ----NRGVVSMVILKMTETQAGEYLLFIQS 124
Query: 164 TVGKISTKTTVIVEGPPGLPGGVQVVEVHKTSATIQWTDGATNGRPITHYKIIARTNWNS 223
+ TV + + + + P
Sbjct: 125 EATNYTILFTVSIRNTLLYTLRRPYFRKMENQDALVCI---SESVPEPIV---------- 171
Query: 224 TWFNVSEHVIGKEVDRYTGRKEASIENVLVPWSTYEFKVIAGNELGY 270
W + + E VL + + A NELG
Sbjct: 172 EWVLCDSQGESCKEESP--AVVKKEEKVLHELFGTDIRCCARNELGR 216
Score = 74.3 bits (182), Expect = 3e-14
Identities = 9/85 (10%), Positives = 22/85 (25%), Gaps = 1/85 (1%)
Query: 2 AGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCT 61
+ +A P+ + W ++ + ++ + G Y
Sbjct: 338 IDQYEEFCFSVRFKAYPQIRCTWTFSRKSF-PCEQKGLDNGYSISKFCNHKHQPGEYIFH 396
Query: 62 ATNVHGMDESKGRLIVLHGPSYYEQ 86
A N L + G ++
Sbjct: 397 AENDDAQFTKMFTLNIRSGTKHHHH 421
>1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A
{Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4
b.1.1.4
Length = 395
Score = 112 bits (282), Expect = 5e-27
Identities = 35/182 (19%), Positives = 60/182 (32%), Gaps = 16/182 (8%)
Query: 1 YAGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKI-----FENGNLLISPVSRDDS 55
A G I+C + P + K+G + +I LL +D
Sbjct: 223 MAKAGDVTMIYCMYGSNPMGYPNYFKNGKDVNGNPEDRITRHNRTSGKRLLFKTTLPEDE 282
Query: 56 GIYSCTATNVHGMDESKG-RLIVLHGPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVA 114
G+Y+C N G + +L V+ P Y ++ I + +++ + C
Sbjct: 283 GVYTCEVDNGVGKPQKHSLKLTVVSAPKYEQKPEKVIVVKQGQDVTIPCKVTGLP--APN 340
Query: 115 YIWTHNGVRIGNMDLNELETPNINIDGGLLEITNASFADAGEYECVVKSTVGKISTKTTV 174
+W+HN + + L I D G Y C + G +T V
Sbjct: 341 VVWSHNAKPLSG--------GRATVTDSGLVIKGVKNGDKGYYGCRATNEHGDKYFETLV 392
Query: 175 IV 176
V
Sbjct: 393 QV 394
Score = 99 bits (249), Expect = 8e-23
Identities = 34/195 (17%), Positives = 50/195 (25%), Gaps = 9/195 (4%)
Query: 2 AGEGGNVTIFCNPEAAPKP-KFVWKKDGNII--GSGGRRKIFENGNLLISPVSRDDSGIY 58
E + C E + K+ WKKDG + G+L+ D G Y
Sbjct: 18 FRENNPTVLECIIEGNDQGVKYSWKKDGKSYNWQEHNAALRKDEGSLVFLRPQASDEGHY 77
Query: 59 SCTATNVHGMDESKGRLIVLHGPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWT 118
C A G+ S+ + T R QL C W
Sbjct: 78 QCFAETPAGVASSRVISFRKTYLIASPAKTHEKTPIEGRPFQLDCVL-PNAYPKPLITWK 136
Query: 119 HNGVRIGNMDLNELETPNINI-DGGLLEITNASFADA---GEYECVVKSTVG-KISTKTT 173
I G L T + D +Y C K+ +
Sbjct: 137 KRLSGADPNADVTDFDRRITAGPDGNLYFTIVTKEDVSDIYKYVCTAKNAAVDEEVVLVE 196
Query: 174 VIVEGPPGLPGGVQV 188
++G G +
Sbjct: 197 YEIKGVTKDNSGYKG 211
>2x1w_L Vascular endothelial growth factor receptor 2; hormone-signaling
protein complex, angiogenesis, glycoprotein, HOST-virus
interaction, membrane; HET: NAG BMA; 2.70A {Homo
sapiens} PDB: 2x1x_R*
Length = 213
Score = 107 bits (269), Expect = 6e-27
Identities = 34/191 (17%), Positives = 60/191 (31%), Gaps = 12/191 (6%)
Query: 1 YAGEGGNVTIFCNPEAAPKPKFVW--KKDGNIIGSGGRRKIFENGN-LLISPVSRDDSGI 57
+ V I C + + G R +++ I +G+
Sbjct: 20 TENKNKTVVIPCLG-SISNLNVSLCARYPEKRFVPDGNRISWDSKKGFTIPSYMISYAGM 78
Query: 58 YSCTATNVHGMDESKGRLIVLHGPSYYE---QLPPKITIAAHRNLQLRCSAHTEELLDVA 114
C A +S ++V+ G Y+ I ++ L L C+A TE + +
Sbjct: 79 VFCEAKINDESYQSIMYIVVVVGYRIYDVVLSPSHGIELSVGEKLVLNCTARTELNVGID 138
Query: 115 YIWTHNGVRIGNM-----DLNELETPNINIDGGLLEITNASFADAGEYECVVKSTVGKIS 169
+ W + + + DL + L I + +D G Y C S +
Sbjct: 139 FNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLSTLTIDGVTRSDQGLYTCAASSGLMTKK 198
Query: 170 TKTTVIVEGPP 180
T V V P
Sbjct: 199 NSTFVRVHEDP 209
Score = 31.7 bits (71), Expect = 0.59
Identities = 6/40 (15%), Positives = 12/40 (30%)
Query: 144 LEITNASFADAGEYECVVKSTVGKISTKTTVIVEGPPGLP 183
I + + AG C K + ++V +
Sbjct: 66 FTIPSYMISYAGMVFCEAKINDESYQSIMYIVVVVGYRIY 105
>2edy_A Receptor-type tyrosine-protein phosphatase F; LAR protein,
leukocyte antigen related, structural genomics, NPPSFA;
NMR {Homo sapiens}
Length = 103
Score = 103 bits (260), Expect = 8e-27
Identities = 28/104 (26%), Positives = 45/104 (43%), Gaps = 6/104 (5%)
Query: 385 SAEDMPQVAPQGVFSRGFNSTAINVTWNPIELIRENIRGRLIGHRIKYWKEDNPEETAVY 444
S P PQ + G ++ + W+P GR+I + + + ++ +E
Sbjct: 3 SGSSGPSGFPQNLHVTGLTTSTTELAWDPPV--LAERNGRIISYTVVFRDINSQQELQN- 59
Query: 445 YLSRTTRNWALIVGLQPDTKYYVKVMAYNNAGEGPESERYLERT 488
TT + GL+PDT Y +KV A+ + G GP S RT
Sbjct: 60 ---ITTDTRFTLTGLKPDTTYDIKVRAWTSKGSGPLSPSIQSRT 100
Score = 73.5 bits (181), Expect = 3e-16
Identities = 21/104 (20%), Positives = 39/104 (37%), Gaps = 6/104 (5%)
Query: 487 RTYRKAPQKPPSAVHIKGINPTTVHVTWRYVSPSFEEEPIIGYKVRVWEVDQDMSRANDT 546
+ P P +H+ G+ +T + W + II Y V +++ N T
Sbjct: 2 SSGSSGPSGFPQNLHVTGLTTSTTELAWDPPVLAERNGRIISYTVVFRDINSQQELQNIT 61
Query: 547 IIPVGNTLDADIVDLSPGKRYHMRVLAFSNGGDGRMSSPAITFQ 590
+ L P Y ++V A+++ G G +S I +
Sbjct: 62 -----TDTRFTLTGLKPDTTYDIKVRAWTSKGSGPLSPS-IQSR 99
Score = 61.2 bits (149), Expect = 6e-12
Identities = 21/104 (20%), Positives = 38/104 (36%), Gaps = 10/104 (9%)
Query: 282 TPADKPYQAPSRIGGGGGKIGDLSISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETLK 341
+ + P P + G ++W+P ++N I Y + +R N + L+
Sbjct: 3 SGSSGPSGFPQNLHVTGLTTSTTELAWDPPVLAERNGRIISYTVVFRDINS----QQELQ 58
Query: 342 EYGNVGIAVVR--IPSEFYYTEYEVKVQAINDVGPGPESEVVTI 383
+ P T Y++KV+A G GP S +
Sbjct: 59 NITTDTRFTLTGLKP----DTTYDIKVRAWTSKGSGPLSPSIQS 98
Score = 48.1 bits (115), Expect = 3e-07
Identities = 23/103 (22%), Positives = 35/103 (33%), Gaps = 16/103 (15%)
Query: 177 EGPPGLPGGVQVVEVHKTSATIQWT---DGATNGRPITHYKIIARTNWNSTWFNVSEHVI 233
GP G P + V + ++ + W NGR I Y ++ R +
Sbjct: 6 SGPSGFPQNLHVTGLTTSTTELAWDPPVLAERNGR-IISYTVVFRDINSQQELQNI---- 60
Query: 234 GKEVDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSP 276
T ++ L P +TY+ KV A G G S
Sbjct: 61 -------TTDTRFTLTG-LKPDTTYDIKVRAWTSKGSGPLSPS 95
>2j8h_A Titin, connectin; cardiomyopathy, nuclear protein,
serine/threonine-protein KI LIMB-girdle muscular
dystrophy, phosphorylation; 1.99A {Homo sapiens} PDB:
2j8o_A 2ill_A
Length = 197
Score = 106 bits (267), Expect = 1e-26
Identities = 38/196 (19%), Positives = 56/196 (28%), Gaps = 35/196 (17%)
Query: 2 AGEGGNVTIFCNPEAAPKPKFVWKKDGN-IIGSGGRRKIFENGN----LLISPVSRDDSG 56
N T+ C PKP W + G II G + +I E L+I+ V+ DD+
Sbjct: 16 VRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGGYHQLIIASVTDDDAT 75
Query: 57 IYSCTATNVHGMDESKGRLIVL-----HGPSYYEQLPPKITIAAHRNLQLRCSAHTEELL 111
+Y ATN G L V H P E + + ++
Sbjct: 76 VYQVRATNQGGSVSGTASLEVEVPAKIHLPKTLEG-MGAVHALRGEVVSIKIPF------ 128
Query: 112 DVAY-----IWTHNGVRIGNMDLNELETPNINI--DGG---LLEITNASFADAGEYECVV 161
W I + + L+ DAG Y
Sbjct: 129 -SGKPDPVITWQKGQDLID-------NNGHYQVIVTRSFTSLVFPNGVERKDAGFYVVCA 180
Query: 162 KSTVGKISTKTTVIVE 177
K+ G + V
Sbjct: 181 KNRFGIDQKTVELDVA 196
Score = 94.4 bits (235), Expect = 2e-22
Identities = 21/81 (25%), Positives = 35/81 (43%), Gaps = 4/81 (4%)
Query: 1 YAGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGN----LLISPVSRDDSG 56
+A G V+I P P W+K ++I + G ++ + + + V R D+G
Sbjct: 115 HALRGEVVSIKIPFSGKPDPVITWQKGQDLIDNNGHYQVIVTRSFTSLVFPNGVERKDAG 174
Query: 57 IYSCTATNVHGMDESKGRLIV 77
Y A N G+D+ L V
Sbjct: 175 FYVVCAKNRFGIDQKTVELDV 195
Score = 52.4 bits (126), Expect = 6e-08
Identities = 22/123 (17%), Positives = 34/123 (27%), Gaps = 25/123 (20%)
Query: 115 YIWTHNGVRIGNMDLNELETPNINIDGGLLEITNASFADAGEYECVVKSTVGKISTKTTV 174
W G I L L I + + DA Y+ + G +S ++
Sbjct: 36 VKWYRQGKEIIADGLKYRIQEFKG-GYHQLIIASVTDDDATVYQVRATNQGGSVSGTASL 94
Query: 175 IVEGPPGLPG-----GVQVVEVHKTS-------------ATIQWTDGATNGRPIT---HY 213
VE P + G+ V + I W I HY
Sbjct: 95 EVEVPAKIHLPKTLEGMGAVHALRGEVVSIKIPFSGKPDPVITWQ---KGQDLIDNNGHY 151
Query: 214 KII 216
++I
Sbjct: 152 QVI 154
>4dkd_C Macrophage colony-stimulating factor 1 receptor; dimeric four-helix
bundle cytokine, receptor tyrosine kinase glycosylation;
HET: NAG BMA; 3.00A {Homo sapiens}
Length = 292
Score = 109 bits (273), Expect = 1e-26
Identities = 33/191 (17%), Positives = 53/191 (27%), Gaps = 16/191 (8%)
Query: 1 YAGEGGNVTIFCNPEA-APKPKFVWKK-DGNIIGSGGRRKIFENGNLLISPVSRDDSGIY 58
E + + C + + G + I S Y
Sbjct: 100 VVFEDQDALLPCLLTDPVLEAGVSLVRVRGRPLMRHTNYSFSPWHGFTIHRAKFIQSQDY 159
Query: 59 SCTATN-VHGMDESKGRLIVLHGPSYYEQLPPKITIAAHR-------NLQLRCSAHTEEL 110
C+A + RL V PP +T+ Q+ CSA + ++
Sbjct: 160 QCSALMGGRKVMSISIRLKVQKVIPG----PPALTLVPAELVRIRGEAAQIVCSASSVDV 215
Query: 111 LDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEITNASFADAGEYECVVKSTVGKIST 170
+ HN ++ ++ L + F AG Y CV + GK ST
Sbjct: 216 -NFDVFLQHNNTKLAIPQQSDFHNNRYQKVL-TLNLDQVDFQHAGNYSCVASNVQGKHST 273
Query: 171 KTTVIVEGPPG 181
V G
Sbjct: 274 SMFFRVVESAG 284
Score = 83.5 bits (206), Expect = 7e-18
Identities = 30/181 (16%), Positives = 55/181 (30%), Gaps = 13/181 (7%)
Query: 4 EGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTAT 63
G VT+ C + + W DG + L + + ++G Y CT
Sbjct: 18 PGATVTLRCVGNGSVE----W--DGPPSPHWTLYSDGSSSILSTNNATFQNTGTYRCTEP 71
Query: 64 NVHGMDESKGRLIVLHGPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVR 123
+ L V + L ++ + ++ L C T+ +L+ R
Sbjct: 72 GDPLGGSAAIHLYVKDPARPWNVLAQEVVVFEDQDALLPCLL-TDPVLEAGVSLVRVRGR 130
Query: 124 IGNMDLNELETPNINIDGGLLEITNASFADAGEYECVVKSTVG-KISTKTTVIVEGPPGL 182
N +P I A F + +Y+C +S + V+
Sbjct: 131 PLMRHTNYSFSPW-----HGFTIHRAKFIQSQDYQCSALMGGRKVMSISIRLKVQKVIPG 185
Query: 183 P 183
P
Sbjct: 186 P 186
>2c5d_C AXL oncogene, tyrosine-protein kinase receptor UFO; signaling
protein/receptor, growth regulation/complex, vitamin
K-dependent protein; HET: NAG; 3.3A {Homo sapiens}
Length = 195
Score = 106 bits (265), Expect = 2e-26
Identities = 38/190 (20%), Positives = 63/190 (33%), Gaps = 24/190 (12%)
Query: 4 EGGNVTIFCNPEA-APKPKFVWKKDGNII------------GSGGRRKIFENGNLLISPV 50
G T+ C + P+ W +DG I+ G + L I+ +
Sbjct: 16 RGLTGTLRCQLQVQGEPPEVHWLRDGQILELADSTQTQVPLGEDEQDDWIVVSQLRITSL 75
Query: 51 SRDDSGIYSCTATNVHGMDESKGRLIVLHGPSYYEQLPPKITIAAHRNLQLRCSAHTEEL 110
D+G Y C H S+ + L G Y+ + P T+AA+ L C A
Sbjct: 76 QLSDTGQYQCLVFLGHQTFVSQPGYVGLEGLPYFLEEPEDRTVAANTPFNLSCQA-QGPP 134
Query: 111 LDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEITNASFADAGEYECVVKSTVGKIST 170
V +W + V L T + L + + + C + G ++
Sbjct: 135 EPVDLLWLQDAV--------PLATAPGHGPQRSLHVPGLN--KTSSFSCEAHNAKGVTTS 184
Query: 171 KTTVIVEGPP 180
+T I P
Sbjct: 185 RTATITVLPQ 194
>2r15_A Myomesin-1; sarcomeric protein, IG-like domains, homodimer,
immunoglobul domain, muscle protein, thick filament,
contractIle protein; 2.24A {Homo sapiens}
Length = 212
Score = 106 bits (266), Expect = 2e-26
Identities = 41/202 (20%), Positives = 64/202 (31%), Gaps = 30/202 (14%)
Query: 2 AGEGGNVTIFCNPEAA-PKPKFVWKKDGNIIGSGGRRKIFENGN---LLISPVSRDDSGI 57
EG + ++ K W +G+ I R K G L I+ + +D G
Sbjct: 16 TAEG--IQLYSFVTYYVEDLKVNWSHNGSAIRYSDRVKTGVTGEQIWLQINEPTPNDKGK 73
Query: 58 YSCTATNVHGMDESKGRLIVL--------------------HGPSYYEQLPPKITIAAHR 97
Y + + L + LP +TI +
Sbjct: 74 YVMELFDGKTGHQKTVDLSGQAYDEAYAEFQRLKQAAIAEKNRARVLGGLPDVVTIQEGK 133
Query: 98 NLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEITNASFADAGEY 157
L L C+ + +V W N + D L+ I S AD+G+Y
Sbjct: 134 ALNLTCNVWGDPPPEV--SWLKNEKALAQTDHCNLK--FEAGRTAYFTINGVSTADSGKY 189
Query: 158 ECVVKSTVGKISTKTTVIVEGP 179
VVK+ G ++ TV V P
Sbjct: 190 GLVVKNKYGSETSDFTVSVFIP 211
Score = 47.6 bits (113), Expect = 3e-06
Identities = 17/110 (15%), Positives = 36/110 (32%), Gaps = 15/110 (13%)
Query: 91 ITIAAHRNLQLRCSAHTEELL--------DVAYIWTHNGVRIGNMDLNELETPNINIDGG 142
+ +L+++ +A +L D+ W+HNG I D + + G
Sbjct: 3 SIALSATDLKIQSTAEGIQLYSFVTYYVEDLKVNWSHNGSAIRYSDRVK-----TGVTGE 57
Query: 143 L--LEITNASFADAGEYECVVKSTVGKISTKTTVIVEGPPGLPGGVQVVE 190
L+I + D G+Y + + + Q ++
Sbjct: 58 QIWLQINEPTPNDKGKYVMELFDGKTGHQKTVDLSGQAYDEAYAEFQRLK 107
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA,
receptor-ligand complex transferase; HET: NAG NDG MAN
BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Length = 347
Score = 109 bits (274), Expect = 2e-26
Identities = 26/183 (14%), Positives = 53/183 (28%), Gaps = 13/183 (7%)
Query: 4 EGGNVTIFCNPEAAPKPKFVWKK-DGNIIGSGGRRKIFENGNLLISPVSR-DDSGIYSCT 61
G +V + C E + W + + + + L ++ V+ + +C
Sbjct: 172 VGDDVLLRCQVEGRGLEQAGWILTELEQSATVMKSGGLPSLGLTLANVTSDLNRKNVTCW 231
Query: 62 ATNVHGMDESKGRLIVLHGPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNG 121
A N G E ++ V + T + + S + + W NG
Sbjct: 232 AENDVGRAEVSVQVNV-----SFPASVQLHTAVEMHHWCIPFSVDGQPAPSLR--WLFNG 284
Query: 122 VRIGNMDL----NELETPNINIDGGLLEITNASFADAGEYECVVKSTVGKISTKTTVIVE 177
+ N + G L + + + G Y + + G+ S
Sbjct: 285 SVLNETSFIFTEFLEPAANETVRHGCLRLNQPTHVNNGNYTLLAANPFGQASASIMAAFM 344
Query: 178 GPP 180
P
Sbjct: 345 DNP 347
>2yd1_A Tyrosine-protein phosphatase LAR; hydrolase; 1.80A {Drosophila
melanogaster} PDB: 3pxj_A
Length = 212
Score = 106 bits (265), Expect = 3e-26
Identities = 47/193 (24%), Positives = 75/193 (38%), Gaps = 22/193 (11%)
Query: 2 AGEGGNVTIFCNPEAAPKPKFVWKKDGN-IIGSGGRRKIFENGN----LLISPV-SRDDS 55
GG + +C P P VW+K+G + G+ R + E L I PV + D
Sbjct: 18 VRVGGVASFYCAARGDPPPSIVWRKNGKKVSGTQSRYTVLEQPGGISILRIEPVRAGRDD 77
Query: 56 GIYSCTATNVHGMDESKG-RLIVLHGPSYYEQLP-----PK-ITIAAHRNLQLRCSAHTE 108
Y C A N G S L + G P P I + + C A
Sbjct: 78 APYECVAENGVGDAVSADATLTIYEGDKTPAGFPVITQGPGTRVIEVGHTVLMTCKAIGN 137
Query: 109 ELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEITNASFADAGEYECVVKSTVGKI 168
++ W N ++ ++ P ++ G L+I N+ D G+YECV ++++G
Sbjct: 138 PTPNI--YWIKNQTKV------DMSNPRYSLKDGFLQIENSREEDQGKYECVAENSMGTE 189
Query: 169 -STKTTVIVEGPP 180
S T + V+
Sbjct: 190 HSKATNLYVKVRR 202
Score = 89.1 bits (221), Expect = 2e-20
Identities = 24/94 (25%), Positives = 33/94 (35%), Gaps = 9/94 (9%)
Query: 4 EGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTAT 63
G V + C P P W K+ + R ++G L I +D G Y C A
Sbjct: 124 VGHTVLMTCKAIGNPTPNIYWIKNQTKVDMSNPRYSLKDGFLQIENSREEDQGKYECVAE 183
Query: 64 NVHGMDESKG-RLIVLHGPSYYEQLPPKITIAAH 96
N G + SK L V ++ T H
Sbjct: 184 NSMGTEHSKATNLYV--------KVRRVGTKHHH 209
>2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor
tyrosine kinase, growth factor cytoki dimerization,
transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A*
Length = 524
Score = 112 bits (280), Expect = 3e-26
Identities = 33/196 (16%), Positives = 63/196 (32%), Gaps = 26/196 (13%)
Query: 4 EGGNVTIFCNPEAAPKP-KFVWKKDGNIIGSGGRRKIFENGN--------LLISPVSRDD 54
EG T+ C + WK++ + + + +G+ L IS +D
Sbjct: 225 EGEEFTVTCTIKDVSSSVYSTWKRENSQTKLQEKYNSWHHGDFNYERQATLTISSARVND 284
Query: 55 SGIYSCTATNVHGMDESKGRLIVLHGP--SYYEQLPPKITIAAHRNLQLRCSAHTEELLD 112
SG++ C A N G L V+ + + + + + N+ L
Sbjct: 285 SGVFMCYANNTFGSANVTTTLEVVDKGFINIFPMINTTVFVNDGENVDLIVEYE------ 338
Query: 113 VAY------IWTHNGVRIGNM--DLNELETPNINIDGGLLEITNASFADAGEYECVVKST 164
A+ W + + D + E + L +T + G Y +V ++
Sbjct: 339 -AFPKPEHQQWIYMNRTFTDKWEDYPKSENESNIRYVSELHLTRLKGTEGGTYTFLVSNS 397
Query: 165 VGKISTKTTVIVEGPP 180
+ V V P
Sbjct: 398 DVNAAIAFNVYVNTKP 413
Score = 103 bits (259), Expect = 1e-23
Identities = 34/199 (17%), Positives = 56/199 (28%), Gaps = 29/199 (14%)
Query: 1 YAGEGGNVTIFCNPEAAPKPKFV-WKKDGNIIGSG--------GRRKIFENGNLLISPVS 51
+ +G NV + EA PKP+ W I L ++ +
Sbjct: 324 FVNDGENVDLIVEYEAFPKPEHQQWIYMNRTFTDKWEDYPKSENESNIRYVSELHLTRLK 383
Query: 52 RDDSGIYSCTATNVHGMDESKGRLIVLHGPSYYEQLPPKI-TIAAHRNLQLRCSAHTEEL 110
+ G Y+ +N + V P+I T N L+C A
Sbjct: 384 GTEGGTYTFLVSNSDVNAAIAFNVYV--------NTKPEILTYDRLVNGMLQCVAAGFPE 435
Query: 111 LDVAYIWTHNGVRIGNMDLNELETPNINIDGGL---------LEITNASFADAGEYECVV 161
+ W + L ++ I +++F G EC
Sbjct: 436 PTID--WYFCPGTEQRCSASVLPVDVQTLNSSGPPFGKLVVQSSIDSSAFKHNGTVECKA 493
Query: 162 KSTVGKISTKTTVIVEGPP 180
+ VGK S +G
Sbjct: 494 YNDVGKTSAYFNFAFKGNN 512
Score = 99.4 bits (247), Expect = 3e-22
Identities = 28/189 (14%), Positives = 49/189 (25%), Gaps = 11/189 (5%)
Query: 1 YAGEGGNVTIFCNPEAAPKPKFVWKK--DGNIIGSGGRRKIFENGNLLISPVSR-DDSGI 57
Y E + + C P+ K G + R ++I V R
Sbjct: 125 YGKEDNDTLVRCPL-TDPEVTNYSLKGCQGKPLPKDLRFIPDPKAGIMIKSVKRAYHRLC 183
Query: 58 YSCTATNVHGMDESKG-RLIVL---HGPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDV 113
C+ S+ L V + + C+ + V
Sbjct: 184 LHCSVDQEGKSVLSEKFILKVRPAFKAVPVVSVSKASYLLREGEEFTVTCTI-KDVSSSV 242
Query: 114 AYIWTHNGVRI--GNMDLNELETPNINIDGGLLEITNASFADAGEYECVVKSTVGKISTK 171
W + + L I++A D+G + C +T G +
Sbjct: 243 YSTWKRENSQTKLQEKYNSWHHGDFNYERQATLTISSARVNDSGVFMCYANNTFGSANVT 302
Query: 172 TTVIVEGPP 180
TT+ V
Sbjct: 303 TTLEVVDKG 311
Score = 64.7 bits (157), Expect = 4e-11
Identities = 18/152 (11%), Positives = 36/152 (23%), Gaps = 26/152 (17%)
Query: 53 DDSGIYSCT----ATNVHGMDESKGRLIVLHGPSYYEQLPPKITIAAHRNLQLRCSAHTE 108
+ + C G + PS + + + ++L C+
Sbjct: 5 RGAWDFLCVLLLLLRVQTGSSQPSVSPGEPSPPSIHPG-KSDLIVRVGDEIRLLCTDPGF 63
Query: 109 ELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEITNASFADAGEYECVVKSTVGKI 168
WT + N + A + G+Y C K +
Sbjct: 64 ------VKWTFEILDETNEN-----------KQNEWITEKAEATNTGKYTCTNKHGLS-- 104
Query: 169 STKTTVIVEGPPGLPGGVQVVEV-HKTSATIQ 199
V V P L + + ++
Sbjct: 105 -NSIYVFVRDPAKLFLVDRSLYGKEDNDTLVR 135
Score = 63.9 bits (155), Expect = 7e-11
Identities = 14/110 (12%), Positives = 23/110 (20%), Gaps = 23/110 (20%)
Query: 4 EGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGN---------------LLIS 48
N + C P+P W + + I
Sbjct: 420 RLVNGMLQCVAAGFPEPTIDWYFCPGTEQRCSASVLPVDVQTLNSSGPPFGKLVVQSSID 479
Query: 49 PVSRDDSGIYSCTATNVHGMDESKGRLIVLHGPSYYEQLPPKITIAAHRN 98
+ +G C A N G + + K I H +
Sbjct: 480 SSAFKHNGTVECKAYNDVGKTSAYFNFAF--------KGNNKEQIHPHHH 521
Score = 63.1 bits (153), Expect = 1e-10
Identities = 21/181 (11%), Positives = 45/181 (24%), Gaps = 20/181 (11%)
Query: 4 EGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTAT 63
G + + C K W + + + + ++G Y+CT
Sbjct: 50 VGDEIRLLCTDPGFVK----WTFEILDETNENK-----QNEWITEKAEATNTGKYTCTNK 100
Query: 64 NVHGMDESKGRLIVLHGPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVR 123
+ S + + P+ + + + +RC E V
Sbjct: 101 H----GLSNSIYVFVRDPAKLFLVDRSLYGKEDNDTLVRCPLTDPE---VTNYSLKGCQG 153
Query: 124 IGNMDLNELETPNINIDGGLLEITNASFADAGEYECVVKSTVG-KISTKTTVIVEGPPGL 182
L + + G++ + C V +S K + V
Sbjct: 154 K---PLPKDLRFIPDPKAGIMIKSVKRAYHRLCLHCSVDQEGKSVLSEKFILKVRPAFKA 210
Query: 183 P 183
Sbjct: 211 V 211
>3rbs_A Myomesin-1; immunoglobulin C-SET domain, contractIle protein; 1.85A
{Homo sapiens}
Length = 207
Score = 105 bits (264), Expect = 3e-26
Identities = 33/200 (16%), Positives = 63/200 (31%), Gaps = 33/200 (16%)
Query: 4 EGGNVTIFCNPEAA-PKPKFVWKKDGNIIGSGGRRKIFENGN-----LLISPVSRDDSGI 57
E G V + E K + + I G + K+ + N + + + +D G
Sbjct: 16 EKGQVRFWMQAEKLSGNAKVNYIFNEKEIFEGPKYKMHIDRNTGIIEMFMEKLQDEDEGT 75
Query: 58 YSCTATNVHGMDESKGRLIVLHGPSYYEQL-----------------PPKITIAAHRNLQ 100
Y+ + + S L+ ++ + N+
Sbjct: 76 YTFQLQDGKATNHSTVVLVGDVFKKLQKEAEFQRQEWIRKQGPHFVEYLSWEVTGECNVL 135
Query: 101 LRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGL--LEITNASFADAGEYE 158
L+C + +W + I + G+ L IT S DAG YE
Sbjct: 136 LKCKV-ANIKKETHIVWYKDEREI-------SVDEKHDFKDGICTLLITEFSKKDAGIYE 187
Query: 159 CVVKSTVGKISTKTTVIVEG 178
++K GK ++ ++ E
Sbjct: 188 VILKDDRGKDKSRLKLVDEA 207
Score = 41.8 bits (98), Expect = 2e-04
Identities = 7/71 (9%), Positives = 20/71 (28%), Gaps = 5/71 (7%)
Query: 115 YIWTHNGVRIGNMDLNELETPNINIDGGL--LEITNASFADAGEYECVVKSTVGKISTKT 172
+ N I ++ + G+ + + D G Y ++ +
Sbjct: 35 VNYIFNEKEIFEGPKYKMHIDR---NTGIIEMFMEKLQDEDEGTYTFQLQDGKATNHSTV 91
Query: 173 TVIVEGPPGLP 183
++ + L
Sbjct: 92 VLVGDVFKKLQ 102
>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain,
vegfr-2, growth factor receptor, VEGF LI
hormone-signaling protein complex, angiogenesis; 3.20A
{Homo sapiens} PDB: 3v6b_R
Length = 772
Score = 112 bits (282), Expect = 3e-26
Identities = 41/236 (17%), Positives = 71/236 (30%), Gaps = 29/236 (12%)
Query: 2 AGEGGNVTIFCNPEAAPKP--KFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYS 59
+ V I C + + + G R I +G+
Sbjct: 140 ENKNKTVVIPCLGSISNLNVSLCARYPEKRFVPDGNRISWDSKKGFTIPSYMISYAGMVF 199
Query: 60 CTATNVHGMDESKGRLIVLHGPSYYEQL---PPKITIAAHRNLQLRCSAHTEELLDVAYI 116
C A +S ++V+ G Y+ + I ++ L L C+A TE + + +
Sbjct: 200 CEAKINDESYQSIMYIVVVVGYRIYDVVLSPSHGIELSVGEKLVLNCTARTELNVGIDFN 259
Query: 117 WTHNGV-----RIGNMDLNELETPNINIDGGLLEITNASFADAGEYECVVKSTVGKISTK 171
W + ++ N DL + L I + +D G Y C S +
Sbjct: 260 WEYPSSKHQHKKLVNRDLKTQSGSEMKKFLSTLTIDGVTRSDQGLYTCAASSGLMTKKNS 319
Query: 172 TTVIVEGPPGLP-----GGVQVVEVHKT-----------SATIQWTDGATNGRPIT 211
T V V P + + V + I+W NG P+
Sbjct: 320 TFVRVHEKPFVAFGSGMESLVEATVGERVRIPAKYLGYPPPEIKWY---KNGIPLE 372
Score = 112 bits (281), Expect = 5e-26
Identities = 30/206 (14%), Positives = 55/206 (26%), Gaps = 33/206 (16%)
Query: 4 EGGNVTIFCNPEAAPKPKFVWKKDGNIIGSG------------------GRRKIFENGN- 44
E +V+++C + + W K G +F N
Sbjct: 563 EQESVSLWCTADRSTFENLTWYKLGPQPLPIHVGELPTPVCKNLDTLWKLNATMFSNSTN 622
Query: 45 ----LLISPVSRDDSGIYSCTATNVHGMDESKGRLIVL---HGPSYYEQLPPKITIAAHR 97
+ + S D G Y C A + + T +
Sbjct: 623 DILIMELKNASLQDQGDYVCLAQDRKTKKRHCVVRQLTVLERVAPTITGNLENQTTSIGE 682
Query: 98 NLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEITNASFADAGEY 157
++++ C+A + +W + + E + L I D G Y
Sbjct: 683 SIEVSCTASGNPPPQI--MWFKDNETL-----VEDSGIVLKDGNRNLTIRRVRKEDEGLY 735
Query: 158 ECVVKSTVGKISTKTTVIVEGPPGLP 183
C S +G + I+EG
Sbjct: 736 TCQACSVLGCAKVEAFFIIEGAQEKT 761
Score = 105 bits (264), Expect = 5e-24
Identities = 37/212 (17%), Positives = 62/212 (29%), Gaps = 35/212 (16%)
Query: 2 AGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCT 61
A G V I P P+ W K+G + S I L I VS D+G Y+
Sbjct: 342 ATVGERVRIPAKYLGYPPPEIKWYKNGIPLES--NHTIKAGHVLTIMEVSERDTGNYTVI 399
Query: 62 ATNVHGMDESKG--RLIVLHGPSYYEQ--LPPKITIAAHRNLQLRCSAH----------- 106
TN ++ L+V P E+ + P + L C+ +
Sbjct: 400 LTNPISKEKQSHVVSLVVYVPPQIGEKSLISPVDSYQYGTTQTLTCTVYAIPPPHHIHWY 459
Query: 107 ---------------TEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGG---LLEITN 148
+ W G + + I+G + +
Sbjct: 460 WQLEEECANEPSQAVSVTNPYPCEEWRSVEDFQGGNKIEVNKNQFALIEGKNKTVSTLVI 519
Query: 149 ASFADAGEYECVVKSTVGKISTKTTVIVEGPP 180
+ + Y+C + VG+ + V P
Sbjct: 520 QAANVSALYKCEAVNKVGRGERVISFHVTRGP 551
Score = 105 bits (262), Expect = 1e-23
Identities = 30/195 (15%), Positives = 60/195 (30%), Gaps = 29/195 (14%)
Query: 4 EGGNVTIFCNPEAAPKPKFVWKKDGN-------------IIGSGGRRKIFENGNLLISPV 50
G + + C + + + G L I V
Sbjct: 238 VGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLSTLTIDGV 297
Query: 51 SRDDSGIYSCTATNVHGMDESKGRLIVLHGPS--YYEQLPPKITIAAHRNLQLRCSAHTE 108
+R D G+Y+C A++ ++ + V P + + + +++
Sbjct: 298 TRSDQGLYTCAASSGLMTKKNSTFVRVHEKPFVAFGSGMESLVEATVGERVRIPAKYLGY 357
Query: 109 ELLDVAYIWTHNGVRIGNMDLNELETPNINI-DGGLLEITNASFADAGEYECVVKSTVGK 167
++ W NG+ + N I G +L I S D G Y ++ + + K
Sbjct: 358 PPPEI--KWYKNGIPL---------ESNHTIKAGHVLTIMEVSERDTGNYTVILTNPISK 406
Query: 168 ISTKTT--VIVEGPP 180
++V PP
Sbjct: 407 EKQSHVVSLVVYVPP 421
Score = 93.3 bits (231), Expect = 6e-20
Identities = 24/189 (12%), Positives = 47/189 (24%), Gaps = 18/189 (9%)
Query: 4 EGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGN----LLISPVSRDDSGIYS 59
+ I C ++W + + +G L I V +D+G Y
Sbjct: 45 ANTTLQITC--RGQRDLDWLWPNNQSGSEQRVEVTECSDGLFCKTLTIPKVIGNDTGAYK 102
Query: 60 CTATNVHGMDESKGRLIVLHGPSY----YEQLPPKITIAAHRNLQLRCSAHTEELLDVAY 115
C + P + IT ++ + + C L
Sbjct: 103 CFYRETDLASVIYVYVQDYRSPFIASVSDQHGVVYITENKNKTVVIPCLGSISNLNVSLC 162
Query: 116 IWTHNGVRIGNMDLNELETPNINIDG-GLLEITNASFADAGEYECVVKSTVGKISTKTTV 174
+ + I+ D I + + AG C K + +
Sbjct: 163 ARYPEKRFV-------PDGNRISWDSKKGFTIPSYMISYAGMVFCEAKINDESYQSIMYI 215
Query: 175 IVEGPPGLP 183
+V +
Sbjct: 216 VVVVGYRIY 224
Score = 81.7 bits (201), Expect = 3e-16
Identities = 22/88 (25%), Positives = 37/88 (42%), Gaps = 2/88 (2%)
Query: 2 AGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKI-FENGNLLISPVSRDDSGIYSC 60
G ++ + C P P+ +W KD + + N NL I V ++D G+Y+C
Sbjct: 678 TSIGESIEVSCTASGNPPPQIMWFKDNETLVEDSGIVLKDGNRNLTIRRVRKEDEGLYTC 737
Query: 61 TATNVHGMDESKGRLIVLHGPSYYEQLP 88
A +V G + + I+ G L
Sbjct: 738 QACSVLGCAKVEAFFII-EGAQEKTNLE 764
Score = 75.6 bits (185), Expect = 2e-14
Identities = 23/130 (17%), Positives = 39/130 (30%), Gaps = 10/130 (7%)
Query: 54 DSGIYSCTATNVHGMDESKGRLIVLHGPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDV 113
++ C T + + L P Q +TI A+ LQ+ C +
Sbjct: 8 AVALWLCVETRAASVGLPS---VSLDLPRLSIQ-KDILTIKANTTLQITCRGQRD----- 58
Query: 114 AYIWTHNGVRIGNMDLNELETPNINIDGGLLEITNASFADAGEYECVVKSTVGKISTKTT 173
W + G+ E+ + + L I D G Y+C + T
Sbjct: 59 -LDWLWPNNQSGSEQRVEVTECSDGLFCKTLTIPKVIGNDTGAYKCFYRETDLASVIYVY 117
Query: 174 VIVEGPPGLP 183
V P +
Sbjct: 118 VQDYRSPFIA 127
>1wis_A KIAA1514 protein; FNIII domain, sidekick-2, structural genomics,
riken structural genomics/proteomics initiative, RSGI,
unknown function; NMR {Homo sapiens} SCOP: b.1.2.1
Length = 124
Score = 102 bits (255), Expect = 6e-26
Identities = 23/119 (19%), Positives = 48/119 (40%), Gaps = 4/119 (3%)
Query: 169 STKTTVIVEGPPGLPGGVQVVEVHKTSATIQWTDGATNGRPITHYKIIARTNWNSTWFNV 228
T ++ + PG P + + + S T+Q+ G I+ + + A+
Sbjct: 7 GTISSGVPPELPGPPTNLGISNIGPRSVTLQFRPGYDGKTSISRWLVEAQVGVVGEG--- 63
Query: 229 SEHVIGKEVDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPSPQYNTPADKP 287
E ++ ++ + + + L P++ Y F++ N +G PS PS + T P
Sbjct: 64 EEWLLIHQLSNEPDARSMEVPD-LNPFTCYSFRMRQVNIVGTSPPSQPSRKIQTLQSGP 121
Score = 55.4 bits (134), Expect = 1e-09
Identities = 22/124 (17%), Positives = 41/124 (33%), Gaps = 8/124 (6%)
Query: 476 GEGPESERYLERTYRKAPQKPPSAVHIKGINPTTVHVTWRYVSPSFE-EEPIIGYKVRVW 534
G S + P PP+ + I I P +V + + P ++ + I + V
Sbjct: 1 GSSGSSGTISSGVPPELPG-PPTNLGISNIGPRSVTLQF---RPGYDGKTSISRWLVEAQ 56
Query: 535 EVDQDMSRANDTIIPV---GNTLDADIVDLSPGKRYHMRVLAFSNGGDGRMSSPAITFQM 591
I + + ++ DL+P Y R+ + G S P+ Q
Sbjct: 57 VGVVGEGEEWLLIHQLSNEPDARSMEVPDLNPFTCYSFRMRQVNIVGTSPPSQPSRKIQT 116
Query: 592 GEEK 595
+
Sbjct: 117 LQSG 120
Score = 52.3 bits (126), Expect = 1e-08
Identities = 19/127 (14%), Positives = 39/127 (30%), Gaps = 3/127 (2%)
Query: 373 GPGPESEVVTIFSAEDMPQVAPQGVFSRGFNSTAINVTWNPIELIRENIRGRLIGHRIKY 432
G S ++ ++P P + ++ + + P + +I L+ ++
Sbjct: 1 GSSGSSGTISSGVPPELPG-PPTNLGISNIGPRSVTLQFRPGYDGKTSISRWLVEAQVGV 59
Query: 433 WKEDNPEETAVYYLSRTTRNWALIVGLQPDTKYYVKVMAYNNAGEGPESERYLERTYRKA 492
E + + L P T Y ++ N G P S+ R +
Sbjct: 60 VGEGEEWLLIHQLSNEPDARSMEVPDLNPFTCYSFRMRQVNIVGTSPPSQ--PSRKIQTL 117
Query: 493 PQKPPSA 499
P S
Sbjct: 118 QSGPSSG 124
Score = 35.0 bits (81), Expect = 0.016
Identities = 17/133 (12%), Positives = 36/133 (27%), Gaps = 24/133 (18%)
Query: 269 GYGEPSSPSPQYNTPADKPYQAPSRIGGGGGKIGDLS-----ISWEPLPREKQNAP---- 319
G S P + P P+ + I ++ + + P
Sbjct: 1 GSSGSSGTI-SSGVPPELP-GPPTNL-----GISNIGPRSVTLQFRP--GYDGKTSISRW 51
Query: 320 NIYYKIFWRKKNDTEFQSETLKEYGNVGIAVVR--IPSEFYYTEYEVKVQAINDVGPGPE 377
+ ++ + + L + V P +T Y +++ +N VG P
Sbjct: 52 LVEAQVGVVGEGEEWLLIHQLSNEPDARSMEVPDLNP----FTCYSFRMRQVNIVGTSPP 107
Query: 378 SEVVTIFSAEDMP 390
S+
Sbjct: 108 SQPSRKIQTLQSG 120
>3ejj_X Macrophage colony-stimulating factor 1 receptor; growth
factor-receptor complex, receptor tyrosine kinase, CY
4-helix bundle, ATP-binding; HET: NAG; 2.40A {Mus
musculus}
Length = 289
Score = 106 bits (266), Expect = 1e-25
Identities = 35/190 (18%), Positives = 51/190 (26%), Gaps = 16/190 (8%)
Query: 1 YAGEGGNVTIFCNPEAA-PKPKFVWKKDG-NIIGSGGRRKIFENGNLLISPVSRDDSGIY 58
EG + C K ++G + +I DS Y
Sbjct: 100 TVVEGQEAVLPCLITDPALKDSVSLMREGGRQVLRKTVYFFSPWRGFIIRKAKVLDSNTY 159
Query: 59 SCTATN-VHGMDESKGRLIVLHGPSYYEQLPPKITIAAHR-------NLQLRCSAHTEEL 110
C + L V PP+I + + Q+ CSA E+
Sbjct: 160 VCKTMVNGRESTSTGIWLKVNRVHPE----PPQIKLEPSKLVRIRGEAAQIVCSATNAEV 215
Query: 111 LDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEITNASFADAGEYECVVKSTVGKIST 170
+ G + LN N L + F DAG Y CV + VG +
Sbjct: 216 GFN--VILKRGDTKLEIPLNSDFQDNYYKKVRALSLNAVDFQDAGIYSCVASNDVGTRTA 273
Query: 171 KTTVIVEGPP 180
V
Sbjct: 274 TMNFQVVESH 283
Score = 91.2 bits (226), Expect = 2e-20
Identities = 30/181 (16%), Positives = 50/181 (27%), Gaps = 13/181 (7%)
Query: 4 EGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTAT 63
G VT+ C + + W + + L + ++G Y CT
Sbjct: 18 PGETVTLRCVSNGSVE----WDGPISPYWTLDPES--PGSTLTTRNATFKNTGTYRCTEL 71
Query: 64 NVHGMDESKGRLIVLHGPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVR 123
+ L V + L ++T+ + L C T+ L + G R
Sbjct: 72 EDPMAGSTTIHLYVKDPAHSWNLLAQEVTVVEGQEAVLPCLI-TDPALKDSVSLMREGGR 130
Query: 124 IGNMDLNELETPNINIDGGLLEITNASFADAGEYECVVK-STVGKISTKTTVIVEGPPGL 182
+P I A D+ Y C + ST + V
Sbjct: 131 QVLRKTVYFFSPW-----RGFIIRKAKVLDSNTYVCKTMVNGRESTSTGIWLKVNRVHPE 185
Query: 183 P 183
P
Sbjct: 186 P 186
>1epf_A NCAM, protein (neural cell adhesion molecule); immunoglobulin fold,
glycoprotein; 1.85A {Rattus norvegicus} SCOP: b.1.1.4
b.1.1.4 PDB: 2ncm_A 3ncm_A
Length = 191
Score = 103 bits (258), Expect = 1e-25
Identities = 29/184 (15%), Positives = 53/184 (28%), Gaps = 19/184 (10%)
Query: 4 EGGNVTIFCNPEAAPKPKFV-WKKDGN--IIGSGGRRKI----FENGNLLISPVSRDDSG 56
G + C K K + W + + R + ++ L I + DD+G
Sbjct: 16 VGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDDSSTLTIYNANIDDAG 75
Query: 57 IYSCTATNVHGMDESKGRLIVLHGPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYI 116
IY C T G + + ++ P + + C + + I
Sbjct: 76 IYKCVVTAEDGTQSEATVNVKIFQKLMFKNAPTPQEFKEGEDAVIVCDVVSSLPPTI--I 133
Query: 117 WTHNGVRIGNMDLNELETPNINI---DGGLLEITNASFADAGEYECVVKSTVGKISTKTT 173
W H G + + ++ L+I D G Y C +
Sbjct: 134 WKHKGRDV-------ILKKDVRFIVLSNNYLQIRGIKKTDEGTYRCEGRILARGEINFKD 186
Query: 174 VIVE 177
+ V
Sbjct: 187 IQVI 190
>3fl7_A Ephrin receptor; ATP-binding, kinase, nucleotide-binding, transfera
phosphorylation, transmembrane, tyrosine-protein kinase,
glycoprotein; HET: NAG; 2.50A {Homo sapiens} PDB:
2x10_A* 2x11_A 3mx0_A* 3mbw_A*
Length = 536
Score = 109 bits (273), Expect = 2e-25
Identities = 50/307 (16%), Positives = 83/307 (27%), Gaps = 31/307 (10%)
Query: 91 ITIAAHRNLQLRCSAHTEELLDVAYIWTHNG----VRIGNMDLNELETPNINIDGGLLEI 146
+ ++ C+ E L+ + G + L
Sbjct: 240 VVPPGGEEPRMHCAVDGEWLVPIGQCLCQAGYEKVEDACQACSPGFFKFEASESPCLECP 299
Query: 147 TNASFADAGEYECVVKSTVGKISTKTTVIVEGPPGLPGGVQVVEVHKTSATIQWTDGA-T 205
+ + G C + + + P ++WT +
Sbjct: 300 EHTLPSPEGATSCECEEGFFRAPQDPASMPCTRPPSAPHYLTAVGMGAKVELRWTPPQDS 359
Query: 206 NGRPITHYKIIARTNW--NSTWFNVSEHVIGKEVDRYTGRKEASIENVLVPWSTYEFKVI 263
GR Y + W + V E R ++ + L P Y F V
Sbjct: 360 GGREDIVYSVTCEQCWPESGECGPCEASVRYSEPPHGLTRTSVTVSD-LEPHMNYTFTVE 418
Query: 264 AGNELGYGEPSSPSPQYNTPADKPYQAPSRIGGGGGKIGDLSISWEPLPREKQNAPNIYY 323
A N + S P ++ G LS+SW P Q + Y
Sbjct: 419 ARNGVSGLVTSRSFRT--ASVSINQTEPPKVRLEGRSTTSLSVSWSIPPP--QQSRVWKY 474
Query: 324 KIFWRKKNDTEFQSETLKEYGNVGIAVVRIPSEFY-------YTEYEVKVQAINDVGPGP 376
++ +RKK D+ + V R T Y V+VQA+ G G
Sbjct: 475 EVTYRKKGDSNSYN------------VRRTEGFSVTLDDLAPDTTYLVQVQALTQEGQGA 522
Query: 377 ESEVVTI 383
S+V
Sbjct: 523 GSKVHEF 529
Score = 107 bits (269), Expect = 6e-25
Identities = 41/270 (15%), Positives = 73/270 (27%), Gaps = 18/270 (6%)
Query: 327 WRKKNDTEFQSETLKEYGNVGIAVVRIPSEFYYTEYEVKVQAINDVGPGPESEVVTIFSA 386
+ K + + E + P+
Sbjct: 273 KVEDACQACSPGFFKFEASESPCLECPEHTLPSPEGATSCECEEGFFRAPQDPASMP--- 329
Query: 387 EDMPQVAPQGVFSRGFNSTAINVTWNPI------ELIRENIRGRLIGHRIKYWKEDNPEE 440
P AP + + + + W P E I ++
Sbjct: 330 CTRPPSAPHYLTAV-GMGAKVELRWTPPQDSGGREDIVYSVTCEQCWPESGECGPCEASV 388
Query: 441 TAVYYLSRTTRNWALIVGLQPDTKYYVKVMAYNNAGEGPESERYLERTYRKAPQKPPSAV 500
TR + L+P Y V A N S + + Q P V
Sbjct: 389 RYSEPPHGLTRTSVTVSDLEPHMNYTFTVEARNGVSGLVTSRSFRTAS-VSINQTEPPKV 447
Query: 501 HIKGINPTTVHVTWRYVSPSFEEEPIIGYKVRVWEVDQDMSRANDTIIPVGNTLDADIVD 560
++G + T++ V+W P ++ + Y+V + N + + D
Sbjct: 448 RLEGRSTTSLSVSWS--IPPPQQSRVWKYEVTYRKKGDS----NSYNVRRTEGFSVTLDD 501
Query: 561 LSPGKRYHMRVLAFSNGGDGRMSSPAITFQ 590
L+P Y ++V A + G G S FQ
Sbjct: 502 LAPDTTYLVQVQALTQEGQGA-GSKVHEFQ 530
Score = 102 bits (256), Expect = 3e-23
Identities = 36/192 (18%), Positives = 67/192 (34%), Gaps = 16/192 (8%)
Query: 304 LSISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETLKEYGNVGIAVVRIPSEFY----- 358
+ + W P P++ +I Y + + + + +
Sbjct: 349 VELRWTP-PQDSGGREDIVYSVTCEQCWPESGECGPCEASVRYSEPPHGLTRTSVTVSDL 407
Query: 359 --YTEYEVKVQAINDVGPGPESEVVTIFSAEDMPQVAPQGVFSRGFNSTAINVTWNPIEL 416
+ Y V+A N V S S P V G ++T+++V+W+
Sbjct: 408 EPHMNYTFTVEARNGVSGLVTSRSFRTASVSINQT-EPPKVRLEGRSTTSLSVSWSIPP- 465
Query: 417 IRENIRGRLIGHRIKYWKEDNPEETAVYYLSRTTRNWALIVGLQPDTKYYVKVMAYNNAG 476
+ R+ + + Y K+ + V RT + L PDT Y V+V A G
Sbjct: 466 -PQQ--SRVWKYEVTYRKKGDSNSYNVR---RTEGFSVTLDDLAPDTTYLVQVQALTQEG 519
Query: 477 EGPESERYLERT 488
+G S+ + +T
Sbjct: 520 QGAGSKVHEFQT 531
Score = 67.1 bits (163), Expect = 7e-12
Identities = 44/313 (14%), Positives = 81/313 (25%), Gaps = 55/313 (17%)
Query: 12 CNPEAAPKPKFVWKKDGNIIGSGGRRK------------------------IFENGNLLI 47
P +P+ DG + G+
Sbjct: 240 VVPPGGEEPRMHCAVDGEWLVPIGQCLCQAGYEKVEDACQACSPGFFKFEASESPCLECP 299
Query: 48 SPVSRDDSGIYSCTATNVHGMDESKGRLIVLHGPSYYEQLPPKITIAAHRNLQLRCS--- 104
G SC + P P A ++
Sbjct: 300 EHTLPSPEGATSCECEEGFFRAPQDPASMPCTRPP----SAPHYLTAVGMGAKVELRWTP 355
Query: 105 -AHTEELLDVAYI--WTHNGVRIGNMDLNELETPNINIDGGLLEITNASFAD---AGEYE 158
+ D+ Y G E GL T+ + +D Y
Sbjct: 356 PQDSGGREDIVYSVTCEQCWPESGECGPCEASVRYSEPPHGLTR-TSVTVSDLEPHMNYT 414
Query: 159 CVVKST--VGKISTKTTVIV---EGPPGLPGGVQVVEVHKTSATIQWTDGATNGRPITHY 213
V++ V + T + P V++ TS ++ W+ + Y
Sbjct: 415 FTVEARNGVSGLVTSRSFRTASVSINQTEPPKVRLEGRSTTSLSVSWSIPPPQQSRVWKY 474
Query: 214 KIIARTNWNSTWFNVSEHVIGKEVDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEP 273
++ R +S +NV T ++++ L P +TY +V A + G G
Sbjct: 475 EVTYRKKGDSNSYNVRR----------TEGFSVTLDD-LAPDTTYLVQVQALTQEGQGAG 523
Query: 274 SSPSPQYNTPADK 286
S ++ T + +
Sbjct: 524 SKVH-EFQTLSPE 535
Score = 54.4 bits (130), Expect = 7e-08
Identities = 22/168 (13%), Positives = 39/168 (23%), Gaps = 15/168 (8%)
Query: 432 YWKEDNPEETAVYYLSRTTRNWALIVGLQPDTKYYVKVMAYNNAGEGP-ESERYLERTYR 490
Y K ++ + + + + + T + EG + +
Sbjct: 271 YEKVEDACQACSPGFFKFEASESPCLECPEHTLPSPEGATSCECEEGFFRAPQDPASMPC 330
Query: 491 KAPQKPPSAVHIKGINPTTVHVTWRYVSPSFEEE--PIIGYKVRVWEVDQDMSRANDTII 548
P P + V + W P + I Y V + +
Sbjct: 331 TRPPSAPHYLTAV-GMGAKVELRWT---PPQDSGGREDIVYSVTCEQCWPESGECGPCEA 386
Query: 549 PV--------GNTLDADIVDLSPGKRYHMRVLAFSNGGDGRMSSPAIT 588
V + DL P Y V A + S T
Sbjct: 387 SVRYSEPPHGLTRTSVTVSDLEPHMNYTFTVEARNGVSGLVTSRSFRT 434
>2vkw_A Neural cell adhesion molecule 1,140 kDa isoform; adhesion receptor;
2.3A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 PDB: 2vkx_A
1lwr_A
Length = 209
Score = 102 bits (257), Expect = 3e-25
Identities = 45/216 (20%), Positives = 74/216 (34%), Gaps = 29/216 (13%)
Query: 175 IVEGPPGLPGGVQVVEVHKTSATIQWTD-GATNGRPITHYKIIARTNWNSTWFNVSEHVI 233
P P + VE + ++A +Q+ + AT G PI YK R W +
Sbjct: 4 AQADTPSSPS-IDQVEPYSSTAQVQFDEPEATGGVPILKYKAEWRAVGEEVWHSKWY--- 59
Query: 234 GKEVDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPSPQYNTPADKPYQAPSR 293
+ + +I L P +TY ++ A N G GE S+ S ++ T + AP
Sbjct: 60 --DAKEASMEGIVTIVG-LKPETTYAVRLAALNGKGLGEISAAS-EFKTQPVREPSAPKL 115
Query: 294 IGGGGGKIGDLSISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETLKEYGNVGIAVVRI 353
G G + ++ +P +Y + +R + +
Sbjct: 116 EGQMGEDGNSIKVNLIKQDD--GGSPIRHYLVRYRALSSEWKPEIR-----------LPS 162
Query: 354 PSEFY-------YTEYEVKVQAINDVGPGPESEVVT 382
S+ EYEV V A N G + V
Sbjct: 163 GSDHVMLKSLDWNAEYEVYVVAENQQGKSKAAHFVF 198
Score = 99.5 bits (248), Expect = 5e-24
Identities = 41/220 (18%), Positives = 74/220 (33%), Gaps = 14/220 (6%)
Query: 282 TPADKPYQAPSRIGGGGGKIGDLSISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETLK 341
AD P +PS + ++ P P + YK WR + + S+
Sbjct: 4 AQADTP-SSPSIDQVEPYS-STAQVQFDE-PEATGGVPILKYKAEWRAVGEEVWHSKWYD 60
Query: 342 EYGNVGIAVVRIPSEFYYTEYEVKVQAINDVGPGPESEVVTIFSAEDMPQVAPQGVFSRG 401
+V I T Y V++ A+N G G S + AP+ G
Sbjct: 61 AKEASMEGIVTIVGLKPETTYAVRLAALNGKGLGEISAASEFKTQPVREPSAPKLEGQMG 120
Query: 402 FNSTAINVTWNPIELIRENIRGRLIGHRIKYWKEDNPEETAVYYLSRTTRNWALIVGLQP 461
+ +I V + IR + ++Y + + + S + ++ L
Sbjct: 121 EDGNSIKVNLIKQDDGGSPIR----HYLVRYRALSSEWKPEIRLPSGSDH--VMLKSLDW 174
Query: 462 DTKYYVKVMAYNNAGEGPESERYLERTYRKAPQKPPSAVH 501
+ +Y V V+A N G+ + ++ RT H
Sbjct: 175 NAEYEVYVVAENQQGKSKAAH-FVFRT----AAAHHHHHH 209
Score = 89.5 bits (222), Expect = 2e-20
Identities = 33/188 (17%), Positives = 61/188 (32%), Gaps = 12/188 (6%)
Query: 404 STAINVTWNPIELIRENIRGRLI-GHRIKYWKEDNPEETAVYYLSRT--TRNWALIVGLQ 460
S+ V ++ E G I ++ ++ + +Y ++ IVGL+
Sbjct: 21 SSTAQVQFDE----PEATGGVPILKYKAEWRAVGEEVWHSKWYDAKEASMEGIVTIVGLK 76
Query: 461 PDTKYYVKVMAYNNAGEGPESERYLERTYRKAPQKPPSAVHIKGINPTTVHVTWRYVSPS 520
P+T Y V++ A N G G S +T P G + ++ V
Sbjct: 77 PETTYAVRLAALNGKGLGEISAASEFKTQPVREPSAPKLEGQMGEDGNSIKVNLI--KQD 134
Query: 521 FEEEPIIGYKVRVWEVDQDMSRANDTIIPVGNTLDADIVDLSPGKRYHMRVLAFSNGGDG 580
PI Y VR + + + + L Y + V+A + G
Sbjct: 135 DGGSPIRHYLVRYRALSSEWKPEIRL---PSGSDHVMLKSLDWNAEYEVYVVAENQQGKS 191
Query: 581 RMSSPAIT 588
+ +
Sbjct: 192 KAAHFVFR 199
Score = 65.2 bits (159), Expect = 3e-12
Identities = 24/122 (19%), Positives = 41/122 (33%), Gaps = 14/122 (11%)
Query: 165 VGKISTKTTVIVEG--PPGLPGGVQVVEVHKTSATIQWTDGATNGRPITHYKIIARTNWN 222
+G+IS + + P P + S + G PI HY + R +
Sbjct: 93 LGEISAASEFKTQPVREPSAPKLEGQMGEDGNSIKVNLIKQDDGGSPIRHYLVRYRAL-S 151
Query: 223 STWFNVSEHVIGKEVDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPSPQYNT 282
S W D +++ L + YE V+A N+ G + + + T
Sbjct: 152 SEWKPEIRLPS--GSDHVM------LKS-LDWNAEYEVYVVAENQQGKSKAAHFVFR--T 200
Query: 283 PA 284
A
Sbjct: 201 AA 202
Score = 51.0 bits (122), Expect = 2e-07
Identities = 24/127 (18%), Positives = 39/127 (30%), Gaps = 6/127 (4%)
Query: 492 APQKPPSAVHIKGINPT--TVHVTWRYVSPSFE-EEPIIGYKVRVWEVDQDM-SRANDTI 547
A PS+ I + P T V + P PI+ YK V +++
Sbjct: 4 AQADTPSSPSIDQVEPYSSTAQVQFD--EPEATGGVPILKYKAEWRAVGEEVWHSKWYDA 61
Query: 548 IPVGNTLDADIVDLSPGKRYHMRVLAFSNGGDGRMSSPAITFQMGEEKEFKSGSPALYSA 607
IV L P Y +R+ A + G G +S+ + +
Sbjct: 62 KEASMEGIVTIVGLKPETTYAVRLAALNGKGLGEISAASEFKTQPVREPSAPKLEGQMGE 121
Query: 608 STTLLLV 614
+ V
Sbjct: 122 DGNSIKV 128
>3r4d_A CEA-related cell adhesion molecule 1, isoform 1/2; immunoglobulin,
beta-sandwich, mceacam1A - immunoglobulin FO spike NTD -
galectin-like beta-sandwich fold; HET: NAG; 3.10A {Mus
musculus} PDB: 1l6z_A*
Length = 208
Score = 102 bits (256), Expect = 3e-25
Identities = 38/213 (17%), Positives = 64/213 (30%), Gaps = 35/213 (16%)
Query: 1 YAGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSG-------------------GRRKIFE 41
E NV + + F W K GR I+
Sbjct: 10 QVAEDNNVLLLVHNLPLALGAFAWYKGNTTAIDKEIARFVPNSNMNFTGQAYSGREIIYS 69
Query: 42 NGNLLISPVSRDDSGIYSCTATNVHGMDESK-GRLIVLHGPSYYEQLPPKITIAAHRNLQ 100
NG+LL ++ D G+Y+ T+ + R V + T+ ++
Sbjct: 70 NGSLLFQMITMKDMGVYTLDMTDENYRRTQATVRFHVHQPVTQPFLQVTNTTVKELDSVT 129
Query: 101 LRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEITNASFADAGEYECV 160
L C ++ W N L E ++ + +L I DAGEY+C
Sbjct: 130 LTCLSNDIG---ANIQWLFNSQS-----LQLTERMTLSQNNSILRIDPIKREDAGEYQCE 181
Query: 161 VKSTVG-KISTKTTVIVEGPPGLPGGVQVVEVH 192
+ + V + S + + P H
Sbjct: 182 ISNPVSVRRSNSIKLDIIFDP------HHHHHH 208
>3o4o_C Interleukin-1 receptor type 2; cytokine-receptor complex,
beta-trefoil, IG-like fold, immun; HET: NAG; 3.30A {Homo
sapiens}
Length = 339
Score = 105 bits (263), Expect = 6e-25
Identities = 48/297 (16%), Positives = 87/297 (29%), Gaps = 34/297 (11%)
Query: 4 EGGNVTIFCNP-------EAAPKPKFVWKKDGNII---GSGGRRKIFENGNLLISPVSRD 53
EG V + C +P+ W K+ + G R ++G L + P ++
Sbjct: 32 EGEPVALRCPQVPYWLWASVSPRINLTWHKNDSARTVPGEEETRMWAQDGALWLLPALQE 91
Query: 54 DSGIYSCTATNVHGMDESKGRLIVLHGPS-YYEQLPPKITIAAHRNLQLRCSAHTEELLD 112
DSG Y CT N D+ L V + + + + L C +E D
Sbjct: 92 DSGTYVCTTRNASYCDKMSIELRVFENTDAFLPFISYPQILTLSTSGVLVCPDLSEFTRD 151
Query: 113 V---AYIWTHNGVRIGNMDLNELETPNINIDGGLLEITNASFADAGEYECVVKSTVGKIS 169
W + + + + L L + + + DAG Y CV+
Sbjct: 152 KTDVKIQWYKDSLLLDKDNEKFLSVRG----TTHLLVHDVALEDAGYYRCVLTFAHEGQQ 207
Query: 170 TKTTVIVE---------GPPGLPGGVQVVEVHK-TSATIQWTDGATNGRP---ITHYKI- 215
T +E P + ++ + + TI G P + +
Sbjct: 208 YNITRSIELRIKKKKEETIPVIISPLKTISASLGSRLTIPCKVFLGTGTPLTTMLWWTAN 267
Query: 216 --IARTNWNSTWFNVSEHVIGKEVDRYTGRKEASIENVLVPWSTYEFKVIAGNELGY 270
+ + E + + V +FK + N L +
Sbjct: 268 DTHIESAYPGGRVTEGPRQEYSENNENYIEVPLIFDPVTREDLHMDFKCVVHNTLSF 324
Score = 100 bits (249), Expect = 3e-23
Identities = 34/198 (17%), Positives = 65/198 (32%), Gaps = 27/198 (13%)
Query: 4 EGGNVTIFCN-----PEAAPKPKFVWKKDGNIIGSGGRRKIFE--NGNLLISPVSRDDSG 56
+ + C K W KD ++ + + +LL+ V+ +D+G
Sbjct: 134 LSTSGVLVCPDLSEFTRDKTDVKIQWYKDSLLLDKDNEKFLSVRGTTHLLVHDVALEDAG 193
Query: 57 IYSCTATNVHGMDESKGRLIV-LHGPSYYEQLPPKI-------TIAAHRNLQLRCSAHTE 108
Y C T H + + L E+ P I + + L + C
Sbjct: 194 YYRCVLTFAHEGQQYNITRSIELRIKKKKEETIPVIISPLKTISASLGSRLTIPCKVFLG 253
Query: 109 ELLDVAYI--WTHNGVRIGNMD----LNELETPNINIDGGL-----LEITNASFADAG-E 156
+ + WT N I + + E + + L + D +
Sbjct: 254 TGTPLTTMLWWTANDTHIESAYPGGRVTEGPRQEYSENNENYIEVPLIFDPVTREDLHMD 313
Query: 157 YECVVKSTVGKISTKTTV 174
++CVV +T+ + +TTV
Sbjct: 314 FKCVVHNTLSFQTLRTTV 331
>2gee_A Hypothetical protein; fibronectin, EIIIB, cancer,
neovascularization, cell adhesion, protein binding,
oncoprotein; 2.01A {Homo sapiens} PDB: 2fnb_A
Length = 203
Score = 101 bits (252), Expect = 1e-24
Identities = 40/213 (18%), Positives = 73/213 (34%), Gaps = 20/213 (9%)
Query: 368 AINDVGPGPESEVVTIFSAEDMPQVAPQGVFSRGFNSTAINVTWNPIELIRENIRGRLIG 427
+ S +V S ++P P + ++I + W P+ +IG
Sbjct: 2 GSSHHHHHHSSGLVPRGSHMEVP--QPTDLSFVDITDSSIGLRWTPLN------SSTIIG 53
Query: 428 HRIKYWKEDNPEETAVYYLSRTTRNWALIVGLQPDTKYYVKVMAYNNAGEGPESERYLER 487
+RI ++ + + + GL+P Y + V N GE +
Sbjct: 54 YRITVVAAGEGIPIFEDFVDSSV-GYYTVTGLEPGIDYDISVYTVKNGGESTPT----TL 108
Query: 488 TYRKAPQKPPSAVHIKGINPTTVHVTWRYVSPSFEEEPIIGYKVRVWEVDQDMSRANDTI 547
T + A PP+ + I P T+ VTW + + VR V + A +I
Sbjct: 109 TQQTAV-PPPTDLRFTNIGPDTMRVTWAPPPSI----DLTNFLVRYSPVKNEEDVAELSI 163
Query: 548 IPVGNTLDADIVDLSPGKRYHMRVLAFSNGGDG 580
+ + +L PG Y + V + +
Sbjct: 164 --SPSDNAVVLTNLLPGTEYVVSVSSVYEQHES 194
Score = 84.1 bits (208), Expect = 8e-19
Identities = 40/222 (18%), Positives = 74/222 (33%), Gaps = 35/222 (15%)
Query: 265 GNELGYGEPSSPSPQYNTPADKPYQAPSRIGGGGGKIGDLS-----ISWEPLPREKQNAP 319
G+ + SS + + P P+ + D++ + W PL ++
Sbjct: 2 GSSHHHHHHSSGLVPRGSHMEVP--QPTDL-----SFVDITDSSIGLRWTPLN----SST 50
Query: 320 NIYYKIFWRKKNDTEFQSETLKEYGNVGIAVVR--IPSEFYYTEYEVKVQAINDVGPGPE 377
I Y+I + E + +VG V P +Y++ V + + G
Sbjct: 51 IIGYRITVVAAGEGIPIFEDFVD-SSVGYYTVTGLEP----GIDYDISVYTVKNGGESTP 105
Query: 378 SEVVTIFSAEDMPQVAPQGVFSRGFNSTAINVTWNPIELIRENIRGRLIGHRIKYWKEDN 437
+ + +P P + + VTW P L ++Y N
Sbjct: 106 TTLTQ---QTAVP--PPTDLRFTNIGPDTMRVTWAPPP------SIDLTNFLVRYSPVKN 154
Query: 438 PEETAVYYLSRTTRNWALIVGLQPDTKYYVKVMAYNNAGEGP 479
E+ A +S + N ++ L P T+Y V V + E
Sbjct: 155 EEDVAELSIS-PSDNAVVLTNLLPGTEYVVSVSSVYEQHEST 195
Score = 72.2 bits (177), Expect = 1e-14
Identities = 34/214 (15%), Positives = 66/214 (30%), Gaps = 28/214 (13%)
Query: 169 STKTTVIVEGPPGLPGGVQVVEVHKTSATIQWTDGATNGRPITHYKIIARTNWNSTWFNV 228
S P + V++ +S ++WT N I Y+I T
Sbjct: 12 SGLVPRGSHMEVPQPTDLSFVDITDSSIGLRWT--PLNSSTIIGYRI--------TVVAA 61
Query: 229 SEHVIGKEVDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPSPQYNTPADKPY 288
E + E + ++ L P Y+ V G P++ + Q T
Sbjct: 62 GEGIPIFEDFVDSSVGYYTVTG-LEPGIDYDISVYTVKNGGESTPTTLTQQ--TAVP--- 115
Query: 289 QAPSRIGGGGGKIGDLSISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETLKEYGNVGI 348
P+ + + ++W P P + + + + + E +E +
Sbjct: 116 -PPTDLRFTNIGPDTMRVTWAPPP----SIDLTNFLVRYSPVKNEEDVAELSIS-PSDNA 169
Query: 349 AVVR--IPSEFYYTEYEVKVQAINDVGPGPESEV 380
V+ +P TEY V V ++ +
Sbjct: 170 VVLTNLLP----GTEYVVSVSSVYEQHESTPLRG 199
Score = 64.5 bits (157), Expect = 4e-12
Identities = 21/119 (17%), Positives = 45/119 (37%), Gaps = 8/119 (6%)
Query: 470 MAYNNAGEGPESERYLERTYRKAPQKPPSAVHIKGINPTTVHVTWRYVSPSFEEEPIIGY 529
M ++ S ++ + P P+ + I +++ + W ++ S IIGY
Sbjct: 1 MGSSHHHHHHSSGLVPRGSHMEVP--QPTDLSFVDITDSSIGLRWTPLNSS----TIIGY 54
Query: 530 KVRVWEVDQDMSRANDTIIPVGNTLDADIVDLSPGKRYHMRVLAFSNGGDGRMSSPAIT 588
++ V + + D + + + L PG Y + V NGG+ ++
Sbjct: 55 RITVVAAGEGIPIFEDFV--DSSVGYYTVTGLEPGIDYDISVYTVKNGGESTPTTLTQQ 111
Score = 56.4 bits (136), Expect = 3e-09
Identities = 21/121 (17%), Positives = 41/121 (33%), Gaps = 12/121 (9%)
Query: 156 EYECVVKS-TVGKISTKTTVIVEGPPGLPGGVQVVEVHKTSATIQWTDGATNGRPITHYK 214
+Y+ V + G ST TT+ + P ++ + + + W +T++
Sbjct: 89 DYDISVYTVKNGGESTPTTLTQQTAVPPPTDLRFTNIGPDTMRVTWAPPP--SIDLTNFL 146
Query: 215 IIARTNWNSTWFNVSEHVIGKEVDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPS 274
+ N V+E I + + N L+P + Y V + E P
Sbjct: 147 VRYSPVKNEED--VAELSISPSDNAVV------LTN-LLPGTEYVVSVSSVYEQHESTPL 197
Query: 275 S 275
Sbjct: 198 R 198
>1x4z_A Biregional cell adhesion molecule-related/DOWN- regulated oncogenes
(CDON)binding...; fibronectin type III, FN3; NMR {Mus
musculus} SCOP: b.1.2.1
Length = 121
Score = 96.7 bits (241), Expect = 4e-24
Identities = 26/120 (21%), Positives = 41/120 (34%), Gaps = 9/120 (7%)
Query: 169 STKTTVIVEGPPGLPGGVQVVEVHKTSATIQWTDGATNGRPITHYKIIARTNWNS-TWFN 227
++ PP P + +TS + W G PI +++ + W
Sbjct: 7 GSQPDHGRLSPPEAPDRPTISTASETSVYVTWIPRGNGGFPIQSFRVEYKKLKKVGDWIL 66
Query: 228 VSEHVIGKEVDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPSPQYNTPADKP 287
+ + I L +Y+F+V A N LG EPS+PS Y P
Sbjct: 67 ATSAIPPSR-------LSVEITG-LEKGISYKFRVRALNMLGESEPSAPSRPYVVSGSGP 118
Score = 54.7 bits (132), Expect = 2e-09
Identities = 27/120 (22%), Positives = 46/120 (38%), Gaps = 5/120 (4%)
Query: 476 GEGPESERYLERTYRKAPQKPPSAVHIKGINPTTVHVTWRYVSPSFE-EEPIIGYKVRVW 534
G S + R +P + P I + T+V+VTW P PI ++V
Sbjct: 1 GSSGSSGSQPDHG-RLSPPEAPDRPTISTASETSVYVTW---IPRGNGGFPIQSFRVEYK 56
Query: 535 EVDQDMSRANDTIIPVGNTLDADIVDLSPGKRYHMRVLAFSNGGDGRMSSPAITFQMGEE 594
++ + T + L +I L G Y RV A + G+ S+P+ + +
Sbjct: 57 KLKKVGDWILATSAIPPSRLSVEITGLEKGISYKFRVRALNMLGESEPSAPSRPYVVSGS 116
Score = 42.7 bits (101), Expect = 4e-05
Identities = 30/128 (23%), Positives = 42/128 (32%), Gaps = 8/128 (6%)
Query: 373 GPGPESEVVTIFSAEDMPQVAPQGVFSRGFNSTAINVTWNPIELIRENIRGRLIGHRIKY 432
G S P+ AP + T++ VTW P R N + R++Y
Sbjct: 1 GSSGSSGSQPDHGRLSPPE-APDRPTISTASETSVYVTWIP----RGNGGFPIQSFRVEY 55
Query: 433 WKEDNPEE-TAVYYLSRTTRNWALIVGLQPDTKYYVKVMAYNNAGEGPESERYLERTYRK 491
K + +R I GL+ Y +V A N GE S R Y
Sbjct: 56 KKLKKVGDWILATSAIPPSRLSVEITGLEKGISYKFRVRALNMLGESEPSA--PSRPYVV 113
Query: 492 APQKPPSA 499
+ P S
Sbjct: 114 SGSGPSSG 121
Score = 35.8 bits (83), Expect = 0.008
Identities = 20/126 (15%), Positives = 39/126 (30%), Gaps = 20/126 (15%)
Query: 273 PSSPSPQYNTPADKPYQAPSRIGGGGGKIGDLS-----ISWEPLPREKQNAPNIYYKIFW 327
SS S + P +AP R I S ++W P P +++ +
Sbjct: 4 GSSGSQPDHGRLSPP-EAPDRP-----TISTASETSVYVTWIPRGNG--GFPIQSFRVEY 55
Query: 328 RKKNDT-EFQSETLKEYGNVGIAVVR--IPSEFYYTEYEVKVQAINDVGPGPESEVVTIF 384
+K ++ T + + Y+ +V+A+N +G S +
Sbjct: 56 KKLKKVGDWILATSAIPPSRLSVEITGLEK----GISYKFRVRALNMLGESEPSAPSRPY 111
Query: 385 SAEDMP 390
Sbjct: 112 VVSGSG 117
>2wv3_A Neuroplastin; igcam, membrane, glycoprotein, cell membrane, cell
adhesion, transmembrane, disulfide bond, alternative
splicing; HET: NAG; 1.95A {Rattus norvegicus}
Length = 190
Score = 99.2 bits (247), Expect = 4e-24
Identities = 35/180 (19%), Positives = 57/180 (31%), Gaps = 11/180 (6%)
Query: 2 AGEGGNVTIFCNPEAAPKPK--FVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYS 59
VT+ CN ++ W K+G + + RK N I+ +DSG Y
Sbjct: 15 RDSLLPVTLQCNLTSSSHTLMYSYWTKNGVELTAT--RKNASNMEYRINKPRAEDSGEYH 72
Query: 60 CTATNVHGMDESKGRLIVLHGPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTH 119
C V ++ + V ++ + C + + +W
Sbjct: 73 CVYHFV-SAPKANATIEV-KAAPDITGHKRSENKNEGQDAMMYCKSVGYPHPEW--MWRK 128
Query: 120 NGVRIGNMDLNELETPNINIDGGL--LEITNASFA-DAGEYECVVKSTVGKISTKTTVIV 176
+ N I L I N D GEYEC +++G S T + V
Sbjct: 129 KENGVFEEISNSSGRFFIINKENYTELNIVNLQITEDPGEYECNATNSIGSASVSTVLRV 188
>2yux_A Myosin-binding protein C, SLOW-type; fibronectin III domain,
structural genomics., NPPSFA; NMR {Homo sapiens}
Length = 120
Score = 96.3 bits (240), Expect = 5e-24
Identities = 32/126 (25%), Positives = 49/126 (38%), Gaps = 13/126 (10%)
Query: 166 GKISTKTTVIVEGPPGLPGGVQVVEVHKTSATIQWTDGATNGR-PITHYKIIARTNWNST 224
G + + PG P V++ +V + + WT +G IT Y I +
Sbjct: 4 GSSGASIDIQIIDRPGPPQIVKIEDVWGENVALTWTPPKDDGNAAITGYTIQKADKKSME 63
Query: 225 WFNVSEHVIGKEVDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPSPQYNTPA 284
WF V EH R A+I LV + Y F+V + N G E ++ + + A
Sbjct: 64 WFTVIEHY---------HRTSATITE-LVIGNEYYFRVFSENMCGLSEDATMTKESAVIA 113
Query: 285 --DKPY 288
K Y
Sbjct: 114 RDGKIY 119
Score = 46.2 bits (110), Expect = 2e-06
Identities = 21/91 (23%), Positives = 36/91 (39%), Gaps = 6/91 (6%)
Query: 496 PPSAVHIKGINPTTVHVTWRYVSPSFE-EEPIIGYKVRVWEVDQDMSRANDTIIPVGNTL 554
PP V I+ + V +TW P + I GY ++ + T+I +
Sbjct: 20 PPQIVKIEDVWGENVALTWT--PPKDDGNAAITGYTIQKADKKSMEWF---TVIEHYHRT 74
Query: 555 DADIVDLSPGKRYHMRVLAFSNGGDGRMSSP 585
A I +L G Y+ RV + + G ++
Sbjct: 75 SATITELVIGNEYYFRVFSENMCGLSEDATM 105
Score = 39.3 bits (92), Expect = 5e-04
Identities = 21/95 (22%), Positives = 36/95 (37%), Gaps = 6/95 (6%)
Query: 388 DMPQVAPQGVFSRGFNSTAINVTWNPIELIRENIRGRLIGHRIKYWKEDNPEETAVYYLS 447
D P PQ V + +TW P + ++ + G+ I+ + + E V
Sbjct: 16 DRPG-PPQIVKIEDVWGENVALTWTPPK---DDGNAAITGYTIQKADKKSMEWFTVIEHY 71
Query: 448 RTTRNWALIVGLQPDTKYYVKVMAYNNAGEGPESE 482
T A I L +YY +V + N G ++
Sbjct: 72 HRTS--ATITELVIGNEYYFRVFSENMCGLSEDAT 104
Score = 32.3 bits (74), Expect = 0.14
Identities = 17/89 (19%), Positives = 35/89 (39%), Gaps = 9/89 (10%)
Query: 304 LSISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETLKEYGNVGIAVVR--IPSEFYYTE 361
++++W P P++ NA Y I K E+ T+ E+ + A + + E
Sbjct: 34 VALTWTP-PKDDGNAAITGYTIQKADKKSMEWF--TVIEHYHRTSATITELVI----GNE 86
Query: 362 YEVKVQAINDVGPGPESEVVTIFSAEDMP 390
Y +V + N G ++ + +
Sbjct: 87 YYFRVFSENMCGLSEDATMTKESAVIARD 115
>2dju_A Receptor-type tyrosine-protein phosphatase F; LAR protein,
leukocyte antigen related, structural genomics, NPPSFA;
NMR {Homo sapiens}
Length = 106
Score = 94.7 bits (236), Expect = 2e-23
Identities = 32/115 (27%), Positives = 41/115 (35%), Gaps = 12/115 (10%)
Query: 176 VEGPPGLPGGVQVVEVHKTSATIQWTDGATNGRPITHYKIIARTNWNSTWFNVSEHVIGK 235
P P + V E TS T+ W G N P+T+Y I R F + V
Sbjct: 4 GSSGPKPPIDLVVTETTATSVTLTWDSG--NSEPVTYYGIQYRAAGTEGPFQEVDGVATT 61
Query: 236 EVDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPSPQYNTPADKPYQA 290
SI L P+S Y F+V+A N +G G PS P
Sbjct: 62 R---------YSIGG-LSPFSEYAFRVLAVNSIGRGPPSEAVRARTGEQSGPSSG 106
Score = 51.5 bits (124), Expect = 2e-08
Identities = 22/94 (23%), Positives = 35/94 (37%), Gaps = 7/94 (7%)
Query: 492 APQKPPSAVHIKGINPTTVHVTWRYVSPSFEEEPIIGYKVRVWEVDQDMSRANDTIIPVG 551
+ KPP + + T+V +TW + P+ Y ++ + +
Sbjct: 6 SGPKPPIDLVVTETTATSVTLTWDSGNSE----PVTYYGIQYRAAGTEGPFQEVDGVA-- 59
Query: 552 NTLDADIVDLSPGKRYHMRVLAFSNGGDGRMSSP 585
T I LSP Y RVLA ++ G G S
Sbjct: 60 -TTRYSIGGLSPFSEYAFRVLAVNSIGRGPPSEA 92
Score = 51.2 bits (123), Expect = 3e-08
Identities = 28/115 (24%), Positives = 44/115 (38%), Gaps = 12/115 (10%)
Query: 385 SAEDMPQVAPQGVFSRGFNSTAINVTWNPIELIRENIRGRLIGHRIKYWKEDNPEETAVY 444
S P+ P + +T++ +TW+ + + I+Y
Sbjct: 3 SGSSGPK-PPIDLVVTETTATSVTLTWDS------GNSEPVTYYGIQYRAAGTEGPFQEV 55
Query: 445 YLSRTTRNWALIVGLQPDTKYYVKVMAYNNAGEGPESERYLERTYRKAPQKPPSA 499
TTR I GL P ++Y +V+A N+ G GP SE R Q PS+
Sbjct: 56 DGVATTR--YSIGGLSPFSEYAFRVLAVNSIGRGPPSE---AVRARTGEQSGPSS 105
Score = 41.5 bits (98), Expect = 7e-05
Identities = 21/92 (22%), Positives = 36/92 (39%), Gaps = 22/92 (23%)
Query: 304 LSISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETLKEYGNVGIAVVRIPSEFY----- 358
++++W+ + P YY I +R E V + + Y
Sbjct: 24 VTLTWDS----GNSEPVTYYGIQYRAAGTEGPFQE-----------VDGVATTRYSIGGL 68
Query: 359 --YTEYEVKVQAINDVGPGPESEVVTIFSAED 388
++EY +V A+N +G GP SE V + E
Sbjct: 69 SPFSEYAFRVLAVNSIGRGPPSEAVRARTGEQ 100
>3rjd_A High affinity immunoglobulin gamma FC receptor I; immune system;
HET: NAG MAN FUC P33; 2.65A {Homo sapiens}
Length = 262
Score = 99.2 bits (247), Expect = 2e-23
Identities = 27/180 (15%), Positives = 52/180 (28%), Gaps = 18/180 (10%)
Query: 4 EGGNVTIFCNPEA-APKPKFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTA 62
EG + + C+ ++ ++G N NL I + +G Y C+
Sbjct: 96 EGEPLALRCHAWKDKLVYNVLYYRNGKAFKFFH-----WNSNLTILKTNISHNGTYHCSG 150
Query: 63 TNVHGMDESKGRLIVLHGPSY-YEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNG 121
H + + V + + L C + G
Sbjct: 151 MGKHRYTSAGISVTVKELFPAPVLNASVTSPLLEGNLVTLSCET--------KLLLQRPG 202
Query: 122 VRIGNMDLNELETPNINIDGGLLEITNASFADAGEYECVVKSTVGKI---STKTTVIVEG 178
+++ +T +I A D+G Y C + G + S + + V G
Sbjct: 203 LQLYFSFYMGSKTLRGRNTSSEYQILTARREDSGLYWCEAATEDGNVLKRSPELELQVLG 262
Score = 90.7 bits (225), Expect = 1e-20
Identities = 33/181 (18%), Positives = 52/181 (28%), Gaps = 24/181 (13%)
Query: 4 EGGNVTIFCNPEAAPKP-KFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTA 62
+ VT+ C P W +G + + I+ S +DSG Y C
Sbjct: 15 QEETVTLHCEVLHLPGSSSTQWFLNGTATQT-------STPSYRITSASVNDSGEYRCQR 67
Query: 63 TNVHGMDESKGRLIVLHGPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGV 122
D +L + G + L LRC A ++L+ ++ NG
Sbjct: 68 GLSGRSDPI--QLEIHRGWLLLQ--VSSRVFTEGEPLALRCHAWKDKLV-YNVLYYRNGK 122
Query: 123 RIGNMDLNELETPNINIDGGLLEITNASFADAGEYECVVKSTVGKISTKTTVIVEGPPGL 182
L I + + G Y C S +V V+
Sbjct: 123 AFKFFH-----------WNSNLTILKTNISHNGTYHCSGMGKHRYTSAGISVTVKELFPA 171
Query: 183 P 183
P
Sbjct: 172 P 172
>1x4y_A Biregional cell adhesion molecule-related/DOWN- regulated oncogenes
(CDON)binding...; fibronectin type III, FN3; NMR {Mus
musculus} SCOP: b.1.2.1
Length = 114
Score = 94.5 bits (235), Expect = 2e-23
Identities = 22/98 (22%), Positives = 37/98 (37%)
Query: 488 TYRKAPQKPPSAVHIKGINPTTVHVTWRYVSPSFEEEPIIGYKVRVWEVDQDMSRANDTI 547
+ P P +N TT+ + W Y+ S PI G+ + D D
Sbjct: 3 SGSSGPVAGPYITFTDAVNETTIMLKWMYIPASNNNTPIHGFYIYYRPTDSDNDSDYKKD 62
Query: 548 IPVGNTLDADIVDLSPGKRYHMRVLAFSNGGDGRMSSP 585
+ G+ I L P Y +++ F+ GG+ S+
Sbjct: 63 MVEGDRYWHSISHLQPETSYDIKMQCFNEGGESEFSNV 100
Score = 93.7 bits (233), Expect = 4e-23
Identities = 32/116 (27%), Positives = 43/116 (37%), Gaps = 5/116 (4%)
Query: 385 SAEDMPQVAPQGVFSRGFNSTAINVTWNPIELIRENIRGRLIGHRIKYWKEDNPEETAVY 444
S P P F+ N T I + W I N + G I Y D+ ++
Sbjct: 3 SGSSGPVAGPYITFTDAVNETTIMLKWMYIP--ASNNNTPIHGFYIYYRPTDSDNDSDYK 60
Query: 445 YLS-RTTRNWALIVGLQPDTKYYVKVMAYNNAGEGPESERYLERTYRKAPQKPPSA 499
R W I LQP+T Y +K+ +N GE S + T KA P S
Sbjct: 61 KDMVEGDRYWHSISHLQPETSYDIKMQCFNEGGESEFSNVMICET--KARSGPSSG 114
Score = 59.8 bits (145), Expect = 3e-11
Identities = 20/102 (19%), Positives = 37/102 (36%), Gaps = 1/102 (0%)
Query: 282 TPADKPYQAPSRIGGGGGKIGDLSISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETLK 341
+ + P P + + W +P N P + I++R D++ S+ K
Sbjct: 3 SGSSGPVAGPYITFTDAVNETTIMLKWMYIPASNNNTPIHGFYIYYRP-TDSDNDSDYKK 61
Query: 342 EYGNVGIAVVRIPSEFYYTEYEVKVQAINDVGPGPESEVVTI 383
+ I T Y++K+Q N+ G S V+
Sbjct: 62 DMVEGDRYWHSISHLQPETSYDIKMQCFNEGGESEFSNVMIC 103
Score = 56.0 bits (135), Expect = 7e-10
Identities = 23/114 (20%), Positives = 43/114 (37%), Gaps = 12/114 (10%)
Query: 177 EGPPGLPGGVQVVEVHKTSATIQWT---DGATNGRPITHYKIIARTNWNSTWFNVSEHVI 233
GP P V++T+ ++W N PI + I R + + + ++
Sbjct: 6 SGPVAGPYITFTDAVNETTIMLKWMYIPASNNNT-PIHGFYIYYRPTDSDNDSDYKKDMV 64
Query: 234 GKEVDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPSPQYNTPADKP 287
+ ++ I + L P ++Y+ K+ NE G E S+ T A
Sbjct: 65 EGDRYWHS------ISH-LQPETSYDIKMQCFNEGGESEFSNVM-ICETKARSG 110
>1nn8_R CD155 antigen, poliovirus receptor; icosahedral virus,
picornavirus, virus/receptor complex; 15.00A {Homo
sapiens} SCOP: i.6.1.1 PDB: 1dgi_R
Length = 302
Score = 98.6 bits (245), Expect = 6e-23
Identities = 28/185 (15%), Positives = 45/185 (24%), Gaps = 19/185 (10%)
Query: 1 YAGEGGNVTIFCN-PEAAPKPKFVWKKDGNIIGSGGRRKIFENGN------LLISPVSRD 53
C P + W D + + + F +G ++ P S+
Sbjct: 128 QLTGEPVPMARCVSTGGRPPAQITWHSDLGGMPNTSQVPGFLSGTVTVTSLWILVPSSQV 187
Query: 54 DSGIYSCTATN--VHGMDESKGRLIVLHGPSYYEQLPPKITIAAHRNLQLRCSAHTEELL 111
D +C + L V + P L C A +
Sbjct: 188 DGKNVTCKVEHESFEKPQLLTVNLTVYYPPEVSISGYDNNWYLGQNEATLTCDARSN-PE 246
Query: 112 DVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEITNASFADAGEYECVVKSTVGKISTK 171
Y W+ + P G L I C V + +G +
Sbjct: 247 PTGYNWSTTMGPL---------PPFAVAQGAQLLIRPVDKPINTTLICNVTNALGARQAE 297
Query: 172 TTVIV 176
TV V
Sbjct: 298 LTVQV 302
Score = 74.0 bits (181), Expect = 1e-14
Identities = 30/206 (14%), Positives = 52/206 (25%), Gaps = 39/206 (18%)
Query: 4 EGGNVTIFCNPEAAPKP-----KFVWKKDGNIIG---------------------SGGRR 37
G +VT+ C + + W + G +
Sbjct: 14 LGDSVTLPCYLQVPNMEVTHVSQLTWARHGESGSMAVFHQTQGPSYSESKRLEFVAARLG 73
Query: 38 KIFENGNLLISPVSRDDSGIYSCTA-TNVHGMDESKGRLIVLHGPSYYEQLPPKITIAAH 96
N +L + + +D G Y+C T G L VL P + K+ +
Sbjct: 74 AELRNASLRMFGLRVEDEGNYTCLFVTFPQGSRSVDIWLRVLAKPQNTAE-VQKVQLTGE 132
Query: 97 RNLQLRCSAHTEELLDVAY-----IWTHNGVRIGNMDLNELETPNINIDGGLLEITNASF 151
RC + W + + N L + +S
Sbjct: 133 PVPMARCVSTG------GRPPAQITWHSDLGGMPNTSQVPGFLSGTVTVTSLWILVPSSQ 186
Query: 152 ADAGEYECVVKSTVGKISTKTTVIVE 177
D C V+ + TV +
Sbjct: 187 VDGKNVTCKVEHESFEKPQLLTVNLT 212
>3n1f_C Cell adhesion molecule-related/DOWN-regulated BY; binding sites,
calcium, cell adhesion molecules, cell cycle cell LINE,
conserved sequence; 1.60A {Homo sapiens} PDB: 3d1m_C
3n1q_C 3n1m_C 3n1g_C 3n1p_C
Length = 102
Score = 92.4 bits (230), Expect = 7e-23
Identities = 21/96 (21%), Positives = 38/96 (39%)
Query: 492 APQKPPSAVHIKGINPTTVHVTWRYVSPSFEEEPIIGYKVRVWEVDQDMSRANDTIIPVG 551
P P + + ++ T + + W Y+ S PI G+ + D D + G
Sbjct: 3 TPITGPHIAYTEAVSDTQIMLKWTYIPSSNNNTPIQGFYIYYRPTDSDNDSDYKRDVVEG 62
Query: 552 NTLDADIVDLSPGKRYHMRVLAFSNGGDGRMSSPAI 587
+ I L P Y +++ F+ GG+ S+ I
Sbjct: 63 SKQWHMIGHLQPETSYDIKMQCFNEGGESEFSNVMI 98
Score = 86.3 bits (214), Expect = 1e-20
Identities = 24/100 (24%), Positives = 40/100 (40%), Gaps = 3/100 (3%)
Query: 390 PQVAPQGVFSRGFNSTAINVTWNPIELIRENIRGRLIGHRIKYWKEDNPEETAVYYLS-R 448
P P ++ + T I + W I N + G I Y D+ ++
Sbjct: 4 PITGPHIAYTEAVSDTQIMLKWTYIPS--SNNNTPIQGFYIYYRPTDSDNDSDYKRDVVE 61
Query: 449 TTRNWALIVGLQPDTKYYVKVMAYNNAGEGPESERYLERT 488
++ W +I LQP+T Y +K+ +N GE S + T
Sbjct: 62 GSKQWHMIGHLQPETSYDIKMQCFNEGGESEFSNVMICET 101
Score = 58.9 bits (143), Expect = 4e-11
Identities = 17/80 (21%), Positives = 33/80 (41%), Gaps = 1/80 (1%)
Query: 304 LSISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETLKEYGNVGIAVVRIPSEFYYTEYE 363
+ + W +P N P + I++R D++ S+ ++ I T Y+
Sbjct: 21 IMLKWTYIPSSNNNTPIQGFYIYYRP-TDSDNDSDYKRDVVEGSKQWHMIGHLQPETSYD 79
Query: 364 VKVQAINDVGPGPESEVVTI 383
+K+Q N+ G S V+
Sbjct: 80 IKMQCFNEGGESEFSNVMIC 99
Score = 51.6 bits (124), Expect = 2e-08
Identities = 22/101 (21%), Positives = 36/101 (35%), Gaps = 11/101 (10%)
Query: 179 PPGLPGGVQVVEVHKTSATIQWT---DGATNGRPITHYKIIARTNWNSTWFNVSEHVIGK 235
P P V T ++WT N PI + I R + + V+
Sbjct: 4 PITGPHIAYTEAVSDTQIMLKWTYIPSSNNNT-PIQGFYIYYRPTDSDNDSDYKRDVVE- 61
Query: 236 EVDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSP 276
++ I + L P ++Y+ K+ NE G E S+
Sbjct: 62 -----GSKQWHMIGH-LQPETSYDIKMQCFNEGGESEFSNV 96
>1wf5_A Sidekick 2 protein; FNIII domain, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: b.1.2.1
Length = 121
Score = 93.2 bits (232), Expect = 7e-23
Identities = 26/126 (20%), Positives = 49/126 (38%), Gaps = 11/126 (8%)
Query: 164 TVGKISTKTTVIVEGPPGLPGG--VQVVEVHKTSATIQWTDGATNGRPITHYKIIARTNW 221
+ G + V P P + V + + + WT P+ Y + N
Sbjct: 2 SSGSSGRSAHLRVRQLPHAPEHPVATLSTVERRAINLTWTKPFDGNSPLIRYILEMSEN- 60
Query: 222 NSTWFNVSEHVIGKEVDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPSPQYN 281
N+ W + V K +++ LVP +Y+F++ A N++G G+ S + + +
Sbjct: 61 NAPWTVLLASVDPKAT-------SVTVKG-LVPARSYQFRLCAVNDVGKGQFSKDTERVS 112
Query: 282 TPADKP 287
P P
Sbjct: 113 LPESGP 118
Score = 49.3 bits (118), Expect = 2e-07
Identities = 19/104 (18%), Positives = 41/104 (39%), Gaps = 8/104 (7%)
Query: 492 APQKPPSAVHIKGINPTTVHVTWRYVSPSFE-EEPIIGYKVRVWEVDQDMSRANDTIIPV 550
AP+ P + + +++TW + F+ P+I Y + + E + + ++
Sbjct: 20 APEHPV--ATLSTVERRAINLTW---TKPFDGNSPLIRYILEMSENNAPWTVLLASV--D 72
Query: 551 GNTLDADIVDLSPGKRYHMRVLAFSNGGDGRMSSPAITFQMGEE 594
+ L P + Y R+ A ++ G G+ S + E
Sbjct: 73 PKATSVTVKGLVPARSYQFRLCAVNDVGKGQFSKDTERVSLPES 116
Score = 42.7 bits (101), Expect = 3e-05
Identities = 22/109 (20%), Positives = 42/109 (38%), Gaps = 10/109 (9%)
Query: 393 APQGVFSRGFN--STAINVTWNPIELIRENIRGRLIGHRIKYWKEDNPEETAVYYLSRTT 450
AP+ + AIN+TW + LI + ++ + + P + +
Sbjct: 20 APEHPVATLSTVERRAINLTWTK----PFDGNSPLIRYILEMSENNAPWTVLLASVD-PK 74
Query: 451 RNWALIVGLQPDTKYYVKVMAYNNAGEGPESERYLERTYRKAPQKPPSA 499
+ GL P Y ++ A N+ G+G S+ + P+ PS+
Sbjct: 75 ATSVTVKGLVPARSYQFRLCAVNDVGKGQFSK---DTERVSLPESGPSS 120
Score = 38.9 bits (91), Expect = 8e-04
Identities = 20/92 (21%), Positives = 38/92 (41%), Gaps = 10/92 (10%)
Query: 304 LSISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETLKEYGNVGIAVVR-IPSEFYYTEY 362
++++W P + N+P I Y + + N + + V +P Y
Sbjct: 36 INLTWTK-PFDG-NSPLIRYILEMSENNAPWTVLLASVDPKATSVTVKGLVP----ARSY 89
Query: 363 EVKVQAINDVGPGPESEVVTIFSAEDMPQVAP 394
+ ++ A+NDVG G S+ S +P+ P
Sbjct: 90 QFRLCAVNDVGKGQFSKDTERVS---LPESGP 118
>1wfn_A Sidekick 2; FN3, cell adhesion, structural genomics, riken
structural genomics/proteomics initiative, RSGI; NMR
{Homo sapiens} SCOP: b.1.2.1
Length = 119
Score = 92.5 bits (230), Expect = 1e-22
Identities = 28/127 (22%), Positives = 47/127 (37%), Gaps = 9/127 (7%)
Query: 373 GPGPESEVVTIFSAEDMPQVAPQGVFSRGFNSTAINVTWNPIELIRENIRGRLIGHRIKY 432
G S + + ED+P + T++ V+W G L G+RI +
Sbjct: 1 GSSGSSGPQLVRTHEDVP-GPVGHLSFSEILDTSLKVSWQE----PGEKNGILTGYRISW 55
Query: 433 WKEDNPEETAVYYLSRTTRNWALIVGLQPDTKYYVKVMAYNNAGEGPESERYLERTYRKA 492
+ + +YL T + + GL T Y ++V A + G+G S
Sbjct: 56 EEYNRTNTRVTHYLPNVTLEY-RVTGLTALTTYTIEVAAMTSKGQGQVSA---STISSGV 111
Query: 493 PQKPPSA 499
P PS+
Sbjct: 112 PPSGPSS 118
Score = 72.9 bits (179), Expect = 9e-16
Identities = 26/115 (22%), Positives = 50/115 (43%), Gaps = 5/115 (4%)
Query: 476 GEGPESERYLERTYRKAPQKPPSAVHIKGINPTTVHVTWRYVSPSFEEEPIIGYKVRVWE 535
G S L RT+ P P + I T++ V+W+ P + + GY++ E
Sbjct: 1 GSSGSSGPQLVRTHEDVP-GPVGHLSFSEILDTSLKVSWQ--EPGEKNGILTGYRISWEE 57
Query: 536 VDQDMSRANDTIIPVGNTLDADIVDLSPGKRYHMRVLAFSNGGDGRMSSPAITFQ 590
++ +R + TL+ + L+ Y + V A ++ G G++S+ I+
Sbjct: 58 YNRTNTRVTHYLPN--VTLEYRVTGLTALTTYTIEVAAMTSKGQGQVSASTISSG 110
Score = 53.2 bits (128), Expect = 7e-09
Identities = 26/112 (23%), Positives = 40/112 (35%), Gaps = 11/112 (9%)
Query: 177 EGPPGLPGGVQVVEVHKTSATIQWTD-GATNGRPITHYKIIARTNWNSTWFNVSEHVIGK 235
E PG G + E+ TS + W + G NG +T Y+I +W +
Sbjct: 15 EDVPGPVGHLSFSEILDTSLKVSWQEPGEKNG-ILTGYRI--------SWEEYNRTNTRV 65
Query: 236 EVDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPSPQYNTPADKP 287
E + L +TY +V A G G+ S+ + P P
Sbjct: 66 THYLPNVTLEYRVTG-LTALTTYTIEVAAMTSKGQGQVSASTISSGVPPSGP 116
Score = 49.0 bits (117), Expect = 2e-07
Identities = 27/127 (21%), Positives = 41/127 (32%), Gaps = 10/127 (7%)
Query: 269 GYGEPSSPSPQYNTPADKPYQAPSRIGGGGGKIGDLSISWEPLPREKQNAPNIYYKIFWR 328
G S P T D P + L +SW+ P ++N Y+I W
Sbjct: 1 GSSGSSGPQLVR-THEDVP-GPVGHLSFSEILDTSLKVSWQE-P-GEKNGILTGYRISWE 56
Query: 329 KKNDTEFQSETLKEYGNVGIAVVRIPSEFYYTEYEVKVQAINDVGPGPESEVVTIFSAED 388
+ N T + Y R+ T Y ++V A+ G G S +
Sbjct: 57 EYNRTN---TRVTHYLPNVTLEYRVTGLTALTTYTIEVAAMTSKGQGQVSASTI---SSG 110
Query: 389 MPQVAPQ 395
+P P
Sbjct: 111 VPPSGPS 117
>3u83_A Poliovirus receptor-related protein 1; nectin-1, hinge region
plasiticity, cell adhesion; HET: PG6; 2.50A {Homo
sapiens} PDB: 3alp_A* 3u82_B 3sku_E* 2l7j_A
Length = 331
Score = 98.7 bits (245), Expect = 1e-22
Identities = 25/191 (13%), Positives = 45/191 (23%), Gaps = 25/191 (13%)
Query: 4 EGGNVTIFCN-PEAAPKPKFVWKKDGNIIG-----SGGRRKIFENGNLLISPVSRDDSGI 57
+ + C P W+ + + P
Sbjct: 149 DDKVLVATCTSANGKPPSVVSWETRLKGEAEYQEIRNPNGTVTVISRYRLVPSREAHQQS 208
Query: 58 YSCTATNVHGMDESKGRLIVLHGPSYYEQLPPKITIAAHRNLQLRCSAHTEELLD----- 112
+C + L V + P + +++L C A D
Sbjct: 209 LACIVNYHMDRFKESLTLNVQYEPEVTIEGFDGNWYLQRMDVKLTCKA------DANPPA 262
Query: 113 VAYIWTHNGVRIGNMDLNELETPNINIDGGLLEITNASFADAGEYECVVKSTVGKISTKT 172
Y WT L + L +++ AG Y C + +G S +
Sbjct: 263 TEYHWTTLN--------GSLPKGVEAQNRTLFFKGPINYSLAGTYICEATNPIGTRSGQV 314
Query: 173 TVIVEGPPGLP 183
V + L
Sbjct: 315 EVNITEAAALE 325
Score = 76.3 bits (187), Expect = 3e-15
Identities = 36/210 (17%), Positives = 66/210 (31%), Gaps = 32/210 (15%)
Query: 1 YAGEGGNVTIFC---NPEAAPKPKFV-WKKDGN----------------IIGSGGRRKIF 40
Y G +V + C NP + K V W+K N ++ R F
Sbjct: 25 YGFIGTDVVLHCSFANPLPSVKITQVTWQKSTNGSKQNVAIYNPSMGVSVLAPYRERVEF 84
Query: 41 -----ENGNLLISPVSRDDSGIYSCTA-TNVHGMDESKGRLIVLHGPSYYEQLPPKITIA 94
+G + +S + +D G+Y C T G ES+ L V+ P+ + + + A
Sbjct: 85 LRPSFTDGTIRLSRLELEDEGVYICEFATFPTGNRESQLNLTVMAKPTNWIEGTQAVLRA 144
Query: 95 AH----RNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEITNAS 150
+ L C++ W + + + +
Sbjct: 145 KKGQDDKVLVATCTSA-NGKPPSVVSWETRLKGEAEYQEIRNPNGTVTV-ISRYRLVPSR 202
Query: 151 FADAGEYECVVKSTVGKISTKTTVIVEGPP 180
A C+V + + T+ V+ P
Sbjct: 203 EAHQQSLACIVNYHMDRFKESLTLNVQYEP 232
Score = 42.8 bits (100), Expect = 2e-04
Identities = 15/123 (12%), Positives = 31/123 (25%), Gaps = 18/123 (14%)
Query: 79 HGPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAY--IWTHNGVRIGNMDLNELETPN 136
PS Q+ + ++ L CS W + +
Sbjct: 12 RDPSQVVQVNDSMYGFIGTDVVLHCSFANPLPSVKITQVTWQKSTNGSKQNVAIYNPSMG 71
Query: 137 INIDG---------------GLLEITNASFADAGEYECVVKST-VGKISTKTTVIVEGPP 180
+++ G + ++ D G Y C + G ++ + V P
Sbjct: 72 VSVLAPYRERVEFLRPSFTDGTIRLSRLELEDEGVYICEFATFPTGNRESQLNLTVMAKP 131
Query: 181 GLP 183
Sbjct: 132 TNW 134
>1wio_A CD4, T-cell surface glycoprotein CD4; immunoglobulin fold,
transmembrane, MHC lipoprotein, polymorphism; 3.90A
{Homo sapiens} SCOP: b.1.1.1 b.1.1.1 b.1.1.3 b.1.1.3
PDB: 1wip_A 1wiq_A 3t0e_E
Length = 363
Score = 98.7 bits (245), Expect = 2e-22
Identities = 28/214 (13%), Positives = 63/214 (29%), Gaps = 23/214 (10%)
Query: 4 EGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTAT 63
+G ++T+ P + + I L +S + DSG ++CT
Sbjct: 110 QGQSLTLTLESPPGSSPSVQCRSPRG-------KNIQGGKTLSVSQLELQDSGTWTCTVL 162
Query: 64 NVHGMDESKGRLIVLHGPSYYEQLPPK---------------ITIAAHRNLQLRCSAHTE 108
E K ++VL + K + L + +
Sbjct: 163 QNQKKVEFKIDIVVLAFQKASSIVYKKEGEQVEFSFPLAFTVEKLTGSGELWWQAERASS 222
Query: 109 ELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGL-LEITNASFADAGEYECVVKSTVGK 167
+ + + V + + + + L L +A +G +++ GK
Sbjct: 223 SKSWITFDLKNKEVSVKRVTQDPKLQMGKKLPLHLTLPQALPQYAGSGNLTLALEAKTGK 282
Query: 168 ISTKTTVIVEGPPGLPGGVQVVEVHKTSATIQWT 201
+ + ++V L + TS + +
Sbjct: 283 LHQEVNLVVMRATQLQKNLTCEVWGPTSPKLMLS 316
Score = 93.3 bits (231), Expect = 1e-20
Identities = 31/210 (14%), Positives = 55/210 (26%), Gaps = 44/210 (20%)
Query: 1 YAGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFE------------------- 41
+G V + C +F WK I G +
Sbjct: 5 LGKKGDTVELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQ 64
Query: 42 -NGNLLISPVSRDDSGIYSCTATNVHGMDESKGRLIVLHGPSYYEQLPPKITIAAHRNLQ 100
N L+I + +DS Y C + + + +L+V + + ++L
Sbjct: 65 GNFPLIIKNLKIEDSDTYICEVED----QKEEVQLLVFGLTA-----NSDTHLLQGQSLT 115
Query: 101 LRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEITNASFADAGEYECV 160
L + V G L ++ D+G + C
Sbjct: 116 LTLESPPGSSPSV--QCRSPR-------------GKNIQGGKTLSVSQLELQDSGTWTCT 160
Query: 161 VKSTVGKISTKTTVIVEGPPGLPGGVQVVE 190
V K+ K ++V V E
Sbjct: 161 VLQNQKKVEFKIDIVVLAFQKASSIVYKKE 190
Score = 63.7 bits (154), Expect = 6e-11
Identities = 17/183 (9%), Positives = 42/183 (22%), Gaps = 38/183 (20%)
Query: 3 GEGGNVTIFCNPEAAPKP--KFVWKKDGNIIGSGGRRKIFE-------NGNLLISPVSRD 53
G + ++ K F K + + + + L +
Sbjct: 208 TGSGELWWQAERASSSKSWITFDLKNKEVSVKRVTQDPKLQMGKKLPLHLTLPQALPQYA 267
Query: 54 DSGIYSCTATNVHGMDESKGRLIVLHGPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDV 113
SG + G + L+V+ L C +
Sbjct: 268 GSGNLTLALEAKTGKLHQEVNLVVMRATQ--------------LQKNLTCEVWGPTSPKL 313
Query: 114 AYIWTHNGVRIGNMDLNELETPNINIDGGLLEITNASFADAGEYECVVKSTVGKISTKTT 173
+ +AG ++C++ + G++ ++
Sbjct: 314 MLSLKLENKEAKV--------------SKREKAVWVLNPEAGMWQCLLSDS-GQVLLESN 358
Query: 174 VIV 176
+ V
Sbjct: 359 IKV 361
>1uem_A KIAA1568 protein; immunoglobulin-like beta-sandwich fold,
fibronectin type III, structural genomics; NMR {Homo
sapiens} SCOP: b.1.2.1
Length = 117
Score = 91.7 bits (228), Expect = 2e-22
Identities = 34/120 (28%), Positives = 48/120 (40%), Gaps = 11/120 (9%)
Query: 169 STKTTVIVEGPPGLPGGVQVVEVHKTSATIQWTDGATNGRPITHYKI-IARTNWNSTWFN 227
S+ + PG P QV +V K S T+ W G P + Y I + +++W
Sbjct: 5 SSGKNYDLSDLPGPPSKPQVTDVTKNSVTLSWQPGTPGTLPASAYIIEAFSQSVSNSWQT 64
Query: 228 VSEHVIGKEVDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPSPQYNTPADKP 287
V+ HV + YT + L P + Y F V A N G +PS S T P
Sbjct: 65 VANHV---KTTLYT------VRG-LRPNTIYLFMVRAINPQGLSDPSPMSDPVRTQDSGP 114
Score = 51.2 bits (123), Expect = 3e-08
Identities = 16/101 (15%), Positives = 32/101 (31%), Gaps = 6/101 (5%)
Query: 496 PPSAVHIKGINPTTVHVTWRYVSPSFEEEPIIGYKVRVWEVDQDMS-RANDTIIPVGNTL 554
PPS + + +V ++W+ + P Y + + S + + T
Sbjct: 18 PPSKPQVTDVTKNSVTLSWQ--PGTPGTLPASAYIIEAFSQSVSNSWQTVANHVK---TT 72
Query: 555 DADIVDLSPGKRYHMRVLAFSNGGDGRMSSPAITFQMGEEK 595
+ L P Y V A + G S + + +
Sbjct: 73 LYTVRGLRPNTIYLFMVRAINPQGLSDPSPMSDPVRTQDSG 113
Score = 40.0 bits (94), Expect = 3e-04
Identities = 23/126 (18%), Positives = 38/126 (30%), Gaps = 10/126 (7%)
Query: 375 GPESEVVTIFSAEDMPQVAPQGVFSRGFNSTAINVTWNPIELIRENIRGRLIGHRIKYWK 434
G + D+P P ++ ++W P + I+ +
Sbjct: 1 GSSGSSGKNYDLSDLPG-PPSKPQVTDVTKNSVTLSWQP----GTPGTLPASAYIIEAFS 55
Query: 435 EDNPEE-TAVYYLSRTTRNWALIVGLQPDTKYYVKVMAYNNAGEGPESERYLERTYRKAP 493
+ V +TT + GL+P+T Y V A N G S + R
Sbjct: 56 QSVSNSWQTVANHVKTTL--YTVRGLRPNTIYLFMVRAINPQGLSDPSP--MSDPVRTQD 111
Query: 494 QKPPSA 499
P S
Sbjct: 112 SGPSSG 117
Score = 38.9 bits (91), Expect = 7e-04
Identities = 25/133 (18%), Positives = 42/133 (31%), Gaps = 33/133 (24%)
Query: 271 GEPSSPSPQYNTPADKPYQAPSRIGGGGGKIGDLS-----ISWEPLPREKQNAPNIYYKI 325
G S Y +D P PS+ ++ D++ +SW+P P Y I
Sbjct: 1 GSSGSSGKNY-DLSDLP-GPPSKP-----QVTDVTKNSVTLSWQPGTPG--TLPASAYII 51
Query: 326 -FWRKKNDTEFQSETLKEYGNVGIAVVRIPSEFY-------YTEYEVKVQAINDVGPGPE 377
+ + +Q+ + + Y T Y V+AIN G
Sbjct: 52 EAFSQSVSNSWQT-----------VANHVKTTLYTVRGLRPNTIYLFMVRAINPQGLSDP 100
Query: 378 SEVVTIFSAEDMP 390
S + +D
Sbjct: 101 SPMSDPVRTQDSG 113
>1wj3_A KIAA1496 protein; beta sandwich, PANG, structural genomics, riken
structural genomics/proteomics initiative, RSGI,
neuropeptide; NMR {Homo sapiens} SCOP: b.1.2.1
Length = 117
Score = 91.1 bits (226), Expect = 3e-22
Identities = 19/110 (17%), Positives = 37/110 (33%), Gaps = 8/110 (7%)
Query: 373 GPGPESEVVTIFSAEDMPQVAPQGVFSRGFNSTAINVTWNPIELIRENIRGRLIGHRIKY 432
G S V + + + P P V T + + W ++ + G+++ Y
Sbjct: 1 GSSGSSGTVNVTTKKTPPSQPPGNV-VWNATDTKVLLNWEQVK--AMENESEVTGYKVFY 57
Query: 433 WKEDNPEETAVYYLSRTTRNWALIVGLQPDTKYYVKVMAYNNAGEGPESE 482
+ T + + L Y ++V A + G+G SE
Sbjct: 58 RTSSQNNVQVL-----NTNKTSAELVLPIKEDYIIEVKATTDGGDGTSSE 102
Score = 87.6 bits (217), Expect = 5e-21
Identities = 27/118 (22%), Positives = 43/118 (36%), Gaps = 7/118 (5%)
Query: 476 GEGPESERYLERTYRKAPQKPPSAVHIKGINPTTVHVTWRYVSPSFEEEPIIGYKVRVWE 535
G S T + P +PP V T V + W V E + GYKV
Sbjct: 1 GSSGSSGTVNVTTKKTPPSQPPGNVVWN-ATDTKVLLNWEQVKAMENESEVTGYKVFYRT 59
Query: 536 VDQDMSRANDTIIPVGNTLDADIVDLSPGKRYHMRVLAFSNGGDGRMSSPAITFQMGE 593
Q+ + +T + + + L + Y + V A ++GGDG S ++
Sbjct: 60 SSQNNVQVLNTN---KTSAE---LVLPIKEDYIIEVKATTDGGDGTSSEQIRIPRITS 111
Score = 64.5 bits (157), Expect = 8e-13
Identities = 24/121 (19%), Positives = 41/121 (33%), Gaps = 11/121 (9%)
Query: 269 GYGEPSSPSPQYNTPADKPYQAPSRIGGGGGKIGDLSISWEPLPREKQNAPNIYYKIFWR 328
G S T P Q P + + ++WE + + + YK+F+R
Sbjct: 1 GSSGSSGTVNVT-TKKTPPSQPPGNVVWNATD-TKVLLNWEQVKAMENESEVTGYKVFYR 58
Query: 329 KKNDTEFQS-ETLKEYGNVGIAVVRIPSEFYYTEYEVKVQAINDVGPGPESEVVTIFSAE 387
+ Q T K + + +Y ++V+A D G G SE + I
Sbjct: 59 TSSQNNVQVLNTNKTSAELVLP--------IKEDYIIEVKATTDGGDGTSSEQIRIPRIT 110
Query: 388 D 388
Sbjct: 111 S 111
Score = 46.4 bits (110), Expect = 2e-06
Identities = 23/114 (20%), Positives = 36/114 (31%), Gaps = 17/114 (14%)
Query: 177 EGPPGLPGGVQVVEVHKTSATIQWT---DGATNGRPITHYKIIARTNWNSTWFNVSEHVI 233
+ PP P G V T + W +T YK+ RT+ + ++ +
Sbjct: 15 KTPPSQPPGNVVWNATDTKVLLNWEQVKAMENES-EVTGYKVFYRTSSQNNVQVLNTN-- 71
Query: 234 GKEVDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPSPQYNTPADKP 287
+ S E VL Y +V A + G G S + P
Sbjct: 72 -----------KTSAELVLPIKEDYIIEVKATTDGGDGTSSEQIRIPRITSSGP 114
>2o26_X MAST/stem cell growth factor receptor; stem cell factor, receptor
tyrosine kinase, class III, recep ligand complex,
cytokine, 4-helix bundle; HET: NAG FUL MAN NDG; 2.50A
{Mus musculus}
Length = 290
Score = 96.3 bits (239), Expect = 4e-22
Identities = 27/187 (14%), Positives = 55/187 (29%), Gaps = 19/187 (10%)
Query: 4 EGGNVTIFCNPEAAPKPKFVWKK-DGNIIGSGGRRKIFENGNLLISPVSR-DDSGIYSCT 61
E + + C ++ + DG + + + I V R C
Sbjct: 105 EDSDALVRCPLTDPQVSQYSLIECDGKSLPTDLTFVPNPKAGITIKNVKRAYHRLCVRCA 164
Query: 62 ATNVHGMDESKG-RLIVLHGPSYYEQLPPKITIAAHR-------NLQLRCSAHTEELLDV 113
A S L V P +++ + C+ + V
Sbjct: 165 AQRDGTWLHSDKFTLKVREAIKA----IPVVSVPETSHLLKKGDTFTVVCTI-KDVSTSV 219
Query: 114 AYIWTHNGVRIGNMDLNELETPNINIDG----GLLEITNASFADAGEYECVVKSTVGKIS 169
+W + ++ + + + L I++A D+G + C +T G +
Sbjct: 220 NSMWLKMNPQPQHIAQVKHNSWHRGDFNYERQETLTISSARVDDSGVFMCYANNTFGSAN 279
Query: 170 TKTTVIV 176
TT+ V
Sbjct: 280 VTTTLKV 286
Score = 64.4 bits (156), Expect = 2e-11
Identities = 21/181 (11%), Positives = 41/181 (22%), Gaps = 19/181 (10%)
Query: 4 EGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTAT 63
G +++ C W + + +G Y+C+ +
Sbjct: 26 AGDTLSLTCIDP----DFVRWTFKTYF----NEMVENKKNEWIQEKAEATRTGTYTCSNS 77
Query: 64 NVHGMDESKGRLIVLHGPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVR 123
N S + V P+ + + + +RC ++
Sbjct: 78 NGLT---SSIYVFVRD-PAKLFLVGLPLFGKEDSDALVRCPLTDPQVSQY--SLI----E 127
Query: 124 IGNMDLNELETPNINIDGGLLEITNASFADAGEYECVVKSTVG-KISTKTTVIVEGPPGL 182
L T N G+ C + S K T+ V
Sbjct: 128 CDGKSLPTDLTFVPNPKAGITIKNVKRAYHRLCVRCAAQRDGTWLHSDKFTLKVREAIKA 187
Query: 183 P 183
Sbjct: 188 I 188
Score = 61.3 bits (148), Expect = 2e-10
Identities = 19/86 (22%), Positives = 27/86 (31%), Gaps = 11/86 (12%)
Query: 4 EGGNVTIFCNPEAAPKP-KFVWKKDGNIIGSGGRRKIF----------ENGNLLISPVSR 52
+G T+ C + +W K + K L IS
Sbjct: 202 KGDTFTVVCTIKDVSTSVNSMWLKMNPQPQHIAQVKHNSWHRGDFNYERQETLTISSARV 261
Query: 53 DDSGIYSCTATNVHGMDESKGRLIVL 78
DDSG++ C A N G L V+
Sbjct: 262 DDSGVFMCYANNTFGSANVTTTLKVV 287
>1x5z_A Receptor-type tyrosine-protein phosphatase delta; fibronectin type
III domain containing protein, structural genomics,
NPPSFA; NMR {Homo sapiens} SCOP: b.1.2.1
Length = 115
Score = 90.5 bits (225), Expect = 5e-22
Identities = 24/127 (18%), Positives = 49/127 (38%), Gaps = 13/127 (10%)
Query: 373 GPGPESEVVTIFSAEDMPQVAPQGVFSRGFNSTAINVTWNPIELIRENIRGRLIGHRIKY 432
G S + + + +P P + + T+I ++W P + + + Y
Sbjct: 1 GSSGSSGDIQVITQTGVPG-QPLNFKAEPESETSILLSWTPPR------SDTIANYELVY 53
Query: 433 WKEDNPEETAVYYLSRTTRNWALIVGLQPDTKYYVKVMAYNNAGEGPESERYLERTYRKA 492
++ EE + T+ + GL+P++ YY ++ A + G G + RT
Sbjct: 54 KDGEHGEEQRITIEPGTS---YRLQGLKPNSLYYFRLAARSPQGLGASTAEISART---M 107
Query: 493 PQKPPSA 499
PS+
Sbjct: 108 QSSGPSS 114
Score = 70.8 bits (174), Expect = 4e-15
Identities = 20/119 (16%), Positives = 41/119 (34%), Gaps = 10/119 (8%)
Query: 476 GEGPESERYLERTYRKAPQKPPSAVHIKGINPTTVHVTWRYVSPSFEEEPIIGYKVRVWE 535
G S T P P + + T++ ++W P + I Y++ +
Sbjct: 1 GSSGSSGDIQVITQTGVPG-QPLNFKAEPESETSILLSWT--PP--RSDTIANYELVYKD 55
Query: 536 VDQDMSRANDTIIPVGNTLDADIVDLSPGKRYHMRVLAFSNGGDGRMSSPAITFQMGEE 594
+ + I + + L P Y+ R+ A S G G ++ I+ + +
Sbjct: 56 GEHG----EEQRITIEPGTSYRLQGLKPNSLYYFRLAARSPQGLGASTAE-ISARTMQS 109
Score = 55.4 bits (134), Expect = 9e-10
Identities = 23/120 (19%), Positives = 45/120 (37%), Gaps = 14/120 (11%)
Query: 169 STKTTVIV-EGPPGLPGGVQVVEVHKTSATIQWTDGATNGRPITHYKIIARTNWNSTWFN 227
S VI G PG P + +TS + WT + I +Y+++ + +
Sbjct: 6 SGDIQVITQTGVPGQPLNFKAEPESETSILLSWTPPR-SD-TIANYELVYKDGEHGEEQR 63
Query: 228 VSEHVIGKEVDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPSPQYNTPADKP 287
++ ++ T ++ L P S Y F++ A + G G ++ + P
Sbjct: 64 IT-------IEPGT---SYRLQG-LKPNSLYYFRLAARSPQGLGASTAEISARTMQSSGP 112
Score = 48.1 bits (115), Expect = 3e-07
Identities = 20/129 (15%), Positives = 39/129 (30%), Gaps = 25/129 (19%)
Query: 269 GYGEPSSPSPQYNTPADKPYQAPSRIGGGGGKIGDLSISWEPLPREKQNAPNIYYKIFWR 328
G S Q T P P + +SW P P ++ Y++ ++
Sbjct: 1 GSSGSSGDI-QVITQTGVP-GQPLNFKAEPESETSILLSWTP-P---RSDTIANYELVYK 54
Query: 329 KKNDTEFQSETLKEYGNVGIAVVRIPSEFY-------YTEYEVKVQAINDVGPGPESEVV 381
E Q T++ P Y + Y ++ A + G G + +
Sbjct: 55 DGEHGEEQRITIE------------PGTSYRLQGLKPNSLYYFRLAARSPQGLGASTAEI 102
Query: 382 TIFSAEDMP 390
+ + +
Sbjct: 103 SARTMQSSG 111
>3lb6_C IL-13, interleukin-13 receptor subunit alpha-2; cytokine, decoy,
decoy receptor, glycoprotein; HET: MLY NAG; 3.05A {Homo
sapiens} PDB: 3lb6_D*
Length = 380
Score = 97.2 bits (241), Expect = 6e-22
Identities = 41/334 (12%), Positives = 94/334 (28%), Gaps = 25/334 (7%)
Query: 299 GKIGDLSISWEPLPR-EKQNAPNIYYKIFWRKKNDTEFQSETLKEYGNVGIAVVRIPSEF 357
G +G L + W+P + + Y++ +R +++ K +
Sbjct: 44 GYLGYLYLQWQPPLSLDHFKECTVEYELKYRNIGSETWKTIITKNLHYKDGFDLN-KGIE 102
Query: 358 YYTEYEVKVQAINDVG-PGPESEVVTIFSAEDMPQVAPQGVFSRGFNSTAINVTWNPIEL 416
+ Q N +E S + +P+ Q + +N + +W P
Sbjct: 103 AXIHTLLPWQCTNGSEVQSSWAETTYWISPQGIPETXVQDMDCVYYNWQYLLCSWKP--- 159
Query: 417 IRENIRGRLIGHRIKYWKE--DNPEETAVYYLSRTTRNWALI--VGLQPDTKYYVKVMAY 472
+ + YW E D+ + Y + + +Y+ V
Sbjct: 160 --GIGVLLDTNYNLFYWYEGLDHALQCVDYIKADGQNIGCRFPYLEASDYKDFYICVNGS 217
Query: 473 NNAGEGPESERYLERTYRKAPQKPPSAVHIKGINPTTVHVTWRYVSPSFEEEPIIGYKVR 532
+ S + PP + + + + W Y++
Sbjct: 218 SENKPIRSSYFTFQ-LQNIVKPLPPVYLTFTRESSCEIKLKWSI-PLGPIPARCFDYEIE 275
Query: 533 VWEVDQDMSRANDTIIPVGNTLDADIVDLSPGKRYHMRVLAFSN---GGDGRMS--SPAI 587
+ E D + A + + ++ V + N DG S S
Sbjct: 276 IREDDTTLVTATV------ENETYTLKTTNETRQLCFVVRSKVNIYCSDDGIWSEWSDKQ 329
Query: 588 TFQMGEEKEFKSGSPALYSASTTLLLVMSSTLYI 621
++ + + L +L++ + L +
Sbjct: 330 CWEGEDLSKKTLLRFWLPFGFILILVIFVTGLLL 363
Score = 54.4 bits (130), Expect = 5e-08
Identities = 19/191 (9%), Positives = 44/191 (23%), Gaps = 17/191 (8%)
Query: 179 PPGLPGGVQVVEVHKTSATIQWTDGATNGRPITHYKIIARTNWNSTWFNVSEHVIGKEVD 238
P + V + W G T+Y + +++
Sbjct: 136 PETXVQDMDCVYYNWQYLLCSWKPGIGVLLD-TNYNLFYWYEGLDHALQCVDYI-----K 189
Query: 239 RYTGRKEASIENV-LVPWSTYEFKVIAGNELGYGEPSSPSPQYNTPADKPYQAPSRIGGG 297
+ + + V +E S + P +
Sbjct: 190 ADGQNIGCRFPYLEASDYKDFYICVNGSSENKPI--RSSYFTFQLQNIVKPLPPVYLTFT 247
Query: 298 GGKIGDLSISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETLKEYGNVGIAVVRIPSEF 357
++ + W P A Y+I R+ + T + E + +
Sbjct: 248 RESSCEIKLKWSI-PLGPIPARCFDYEIEIREDDTTLVTATVENE-------TYTLKTTN 299
Query: 358 YYTEYEVKVQA 368
+ V++
Sbjct: 300 ETRQLCFVVRS 310
>1wfo_A Sidekick 2; FN3, cell adhesion, structural genomics, riken
structural genomics/proteomics initiative, RSGI; NMR
{Homo sapiens} SCOP: b.1.2.1
Length = 130
Score = 90.5 bits (225), Expect = 8e-22
Identities = 25/135 (18%), Positives = 53/135 (39%), Gaps = 8/135 (5%)
Query: 366 VQAINDVGPG-PESEVVTIFSAEDMPQVAPQGVFSRGFNSTAINVTWNPIELIRENIRGR 424
+ +G G P + + +D+P P G+ +T++ + W P G
Sbjct: 3 SGSSGRIGDGSPSHPPILERTLDDVPG-PPMGILFPEVRTTSVRLIWQPPA----APNGI 57
Query: 425 LIGHRIKYWKEDNPEETAVYYLSRTTRNWALIVGLQPDTKYYVKVMAYNNAGEGPESERY 484
++ ++I + TA + + GL+P++ Y ++ A G G +E
Sbjct: 58 ILAYQITHRLNTTTANTATVEVLAPSARQYTATGLKPESVYLFRITAQTRKGWGEAAEAL 117
Query: 485 LERTYRKAPQKPPSA 499
+ T +++ P S
Sbjct: 118 VVTTEKRSG--PSSG 130
Score = 70.1 bits (172), Expect = 1e-14
Identities = 24/118 (20%), Positives = 42/118 (35%), Gaps = 5/118 (4%)
Query: 469 VMAYNNAGEG-PESERYLERTYRKAPQKPPSAVHIKGINPTTVHVTWRYVSPSFEEEPII 527
+ G+G P LERT P PP + + T+V + W+ P+ I+
Sbjct: 3 SGSSGRIGDGSPSHPPILERTLDDVPG-PPMGILFPEVRTTSVRLIWQ--PPAAPNGIIL 59
Query: 528 GYKVRVWEVDQDMSRANDTIIPVGNTLDADIVDLSPGKRYHMRVLAFSNGGDGRMSSP 585
Y++ + A ++ + L P Y R+ A + G G +
Sbjct: 60 AYQITHRLNTTTANTATVEVLA-PSARQYTATGLKPESVYLFRITAQTRKGWGEAAEA 116
Score = 60.1 bits (146), Expect = 3e-11
Identities = 29/111 (26%), Positives = 41/111 (36%), Gaps = 8/111 (7%)
Query: 177 EGPPGLPGGVQVVEVHKTSATIQWTDGATNGRPITHYKIIARTNWNSTWFNVSEHVIGKE 236
+ PG P G+ EV TS + W A I Y+I R N +T + V+
Sbjct: 25 DDVPGPPMGILFPEVRTTSVRLIWQPPAAPNGIILAYQITHRLN-TTTANTATVEVLAPS 83
Query: 237 VDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPSPQYNTPADKP 287
+YT L P S Y F++ A G+GE + P
Sbjct: 84 ARQYT------ATG-LKPESVYLFRITAQTRKGWGEAAEALVVTTEKRSGP 127
Score = 57.8 bits (140), Expect = 2e-10
Identities = 25/138 (18%), Positives = 41/138 (29%), Gaps = 20/138 (14%)
Query: 264 AGNELGYGEPSSPSPQYNTPADKPYQAPSRIGGGGGKIGDLS-----ISWEPLPREKQNA 318
+ +G G PS P T D P P I ++ + W+P P N
Sbjct: 5 SSGRIGDGSPSHPPILERTLDDVP-GPPMGI-----LFPEVRTTSVRLIWQP-P-AAPNG 56
Query: 319 PNIYYKIFWRKKNDTEFQSETLKEYGNVGIAVVR--IPSEFYYTEYEVKVQAINDVGPGP 376
+ Y+I R T + + P + Y ++ A G G
Sbjct: 57 IILAYQITHRLNTTTANTATVEVLAPSARQYTATGLKP----ESVYLFRITAQTRKGWGE 112
Query: 377 ESEVVTIF-SAEDMPQVA 393
+E + + P
Sbjct: 113 AAEALVVTTEKRSGPSSG 130
>1itb_B Type 1 interleukin-1 receptor; immunoglobulin fold, transmembrane,
glycoprotein, signal, complex (immunoglobulin/receptor);
2.50A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB:
1ira_Y* 4dep_B* 1g0y_R
Length = 315
Score = 95.2 bits (236), Expect = 1e-21
Identities = 45/305 (14%), Positives = 74/305 (24%), Gaps = 51/305 (16%)
Query: 1 YAGEGGNVTIF-CNPEAAP-KPKFVWKKDGN---IIGSGGRRKIFENGNLLISPVSRDDS 55
+ + C K W KD + + R L P +DS
Sbjct: 15 LVSSANEIDVRPCPLNPNEHKGTITWYKDDSKTPVSTEQASRIHQHKEKLWFVPAKVEDS 74
Query: 56 GIYSCTATNVHGMDESKGRLIVLHGPS---YYEQLPPKITIAAHRNLQLRCSAHTEELLD 112
G Y C N K + Y Q K + + L C +
Sbjct: 75 GHYYCVVRNSSYCLRIKISAKFVENEPNLCYNAQAIFKQKLPVAGDGGLVCPYMEFFKNE 134
Query: 113 ---VAYI-WTHNGVRIGNMDLNELETPNINIDGGLLEITNASFADAGEYECVVKSTVGKI 168
+ + W + + L+ + + L + N + G Y C T
Sbjct: 135 NNELPKLQWYKDCKPL------LLDNIHFSGVKDRLIVMNVAEKHRGNYTCHASYTYLGK 188
Query: 169 STKTTVIVEG----------PPGLPGGVQVVEVHKTSA-------------TIQWTDGAT 205
T ++E P + + +EV S W
Sbjct: 189 QYPITRVIEFITLEENKPTRPVIVSPANETMEVDLGSQIQLICNVTGQLSDIAYWKW--- 245
Query: 206 NGRPITHYKIIARTNWNSTWFNVSEHVIGKEVDRYTGRKEASIENVLVPWSTYEFKVIAG 265
NG I + + R T +I + + + F A
Sbjct: 246 NGSVI-------DEDDPVLGEDYYSVENPANKRRSTLITVLNISEIESRFYKHPFTCFAK 298
Query: 266 NELGY 270
N G
Sbjct: 299 NTHGI 303
Score = 93.2 bits (231), Expect = 6e-21
Identities = 35/198 (17%), Positives = 58/198 (29%), Gaps = 27/198 (13%)
Query: 4 EGGNVTIFCN------PEAAPKPKFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGI 57
G+ + C E PK W KD + L++ V+ G
Sbjct: 117 VAGDGGLVCPYMEFFKNENNELPKLQWYKDCKPLLLDNIHFSGVKDRLIVMNVAEKHRGN 176
Query: 58 YSCTATNVHGMDE-SKGRLIVLHGPSYYEQLPPKITIAAHR--------NLQLRCSAHTE 108
Y+C A+ + + R+I + P I A+ +QL C+ +
Sbjct: 177 YTCHASYTYLGKQYPITRVIEFITLEENKPTRPVIVSPANETMEVDLGSQIQLICNVTGQ 236
Query: 109 ELLDVAYIWTHNGVRIGNMDLNELE---------TPNINIDGGLLEITNASFAD-AGEYE 158
W NG I D E + +L I+ +
Sbjct: 237 LSDIA--YWKWNGSVIDEDDPVLGEDYYSVENPANKRRSTLITVLNISEIESRFYKHPFT 294
Query: 159 CVVKSTVGKISTKTTVIV 176
C K+T G + +I
Sbjct: 295 CFAKNTHGIDAAYIQLIY 312
>1x5j_A Neogenin; RGM binding, fibronectin type III domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
b.1.2.1
Length = 113
Score = 89.1 bits (221), Expect = 2e-21
Identities = 22/115 (19%), Positives = 37/115 (32%), Gaps = 4/115 (3%)
Query: 385 SAEDMPQVAPQGVFSRGFNSTAINVTWNPIELIRENIRGRLIGHRIKYWKEDNPEETAVY 444
S P + P GV + + I +TW L + + +++
Sbjct: 3 SGSSGPMMPPVGVQASILSHDTIRITWADNSLPKHQKITDSRYYTVRWKTNIPANTKYKN 62
Query: 445 YLSRTTRNWALIVGLQPDTKYYVKVMAYNNAGEGPESERYLERTYRKAPQKPPSA 499
+ T L+ GL+P+T Y VM S T+ + P S
Sbjct: 63 --ANATTLSYLVTGLKPNTLYEFSVMVTKGRRSSTWSMTAHGTTFELSG--PSSG 113
Score = 59.1 bits (143), Expect = 5e-11
Identities = 18/97 (18%), Positives = 28/97 (28%), Gaps = 5/97 (5%)
Query: 492 APQKPPSAVHIKGINPTTVHVTWRY--VSPSFEEEPIIGYKVRVWEVDQDMSRANDTIIP 549
P PP V ++ T+ +TW + + Y VR ++
Sbjct: 7 GPMMPPVGVQASILSHDTIRITWADNSLPKHQKITDSRYYTVRWKTNIPANTK---YKNA 63
Query: 550 VGNTLDADIVDLSPGKRYHMRVLAFSNGGDGRMSSPA 586
TL + L P Y V+ S A
Sbjct: 64 NATTLSYLVTGLKPNTLYEFSVMVTKGRRSSTWSMTA 100
Score = 54.1 bits (130), Expect = 3e-09
Identities = 18/116 (15%), Positives = 33/116 (28%), Gaps = 16/116 (13%)
Query: 282 TPADKPYQAPSRIGGGGGKIGDLS-----ISWE--PLPREKQNAPNIYYKIFWRKKNDTE 334
+ + P P + + LS I+W LP+ ++ + YY + W+
Sbjct: 3 SGSSGPMMPPVGV-----QASILSHDTIRITWADNSLPKHQKITDSRYYTVRWKTNIPAN 57
Query: 335 FQSETLKEYGNVGIAVVRIPSEFYYTEYEVKVQAINDVGPGPESEVVTIFSAEDMP 390
+ + N + T YE V S + E
Sbjct: 58 TKYKNA----NATTLSYLVTGLKPNTLYEFSVMVTKGRRSSTWSMTAHGTTFELSG 109
Score = 51.0 bits (122), Expect = 3e-08
Identities = 20/115 (17%), Positives = 33/115 (28%), Gaps = 15/115 (13%)
Query: 177 EGPPGLPGGVQVVEVHKTSATIQWTDGATNGR----PITHYKIIARTNWNSTWFNVSEHV 232
GP P GVQ + + I W D + +Y + +TN + + +
Sbjct: 6 SGPMMPPVGVQASILSHDTIRITWADNSLPKHQKITDSRYYTVRWKTNIPANTKYKNAN- 64
Query: 233 IGKEVDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPSPQYNTPADKP 287
+ L P + YEF V+ S + T
Sbjct: 65 --------ATTLSYLVTG-LKPNTLYEFSVMVTKGRRSSTWSMTAHGT-TFELSG 109
>3e0g_A Leukemia inhibitory factor receptor; IG domain, cytokine binding
homology region (CHR), cell MEMB disease mutation,
glycoprotein, membrane; HET: NAG MAN FUC; 3.10A {Homo
sapiens}
Length = 483
Score = 96.8 bits (240), Expect = 2e-21
Identities = 67/462 (14%), Positives = 129/462 (27%), Gaps = 56/462 (12%)
Query: 155 GEYECVVKST--VGKISTKTTVIVEGPPGLPGGVQVVEVH----KTSATIQWTDG--ATN 206
G+YE + S G ++K T+ + +P +++++ ++ ++W D
Sbjct: 55 GDYEITINSLHDFGSSTSKFTLNEQNVSLIPDTPEILQLSADFSTSTLYLKWNDRGSVFP 114
Query: 207 GRPITHYKIIARTNWNSTWFNVSEHVIGKEVDRYTGRKEASIENVL-VPWSTYEFKV-IA 264
R ++I + V ++ S + + + + + ++
Sbjct: 115 HRSNVIWEIKVLRKESMEL--VKLVTHQTTLNGKDTLHHWSWASDMPLECAIHFVEIRCY 172
Query: 265 GNELGYGEP---SSPSPQYNTPADKPYQAPSRIGGGGGKIGDLSISWEPLPREKQNAPNI 321
+ L + S SP I D P + +I
Sbjct: 173 IDNLHFSGLEEWSDWSPVKQISW----------------IPDSQTKVFPQDKVILVGSDI 216
Query: 322 ------YYKIFWRKKNDTEFQSETLKEYGNVGIAVVRIPSEFYYTEYEVKVQAINDVGPG 375
K+ T L NV I + I V N G
Sbjct: 217 TFCCVSQEKVLSALIGHTNCPLIHLDG-ENVAIKIRNISVSASSGTNVVFTTEDNIFG-- 273
Query: 376 PESEVVTIFSAEDMPQVAPQGVFSRGFNSTAINVTWNPIELIRENIRGRLIGHRIKYWKE 435
P PQ + + I +WNP + R + +
Sbjct: 274 -------TVIFAGYPPDTPQQLNCETHDLKEIICSWNPGRVTALV-GPRATSYTLVESFS 325
Query: 436 DNPEETAVYYLSRTTRNWALIVGLQPDTKYYVKVMAYNNAGEGPESERYLERTYRKAPQK 495
L L Y + A+N G + L K
Sbjct: 326 GKYVRLKRAEAPTNESYQLLFQMLPNQEIYNFTLNAHNPLGRSQST--ILVNITEKVYPH 383
Query: 496 PPSAVHIKGINPTTVHVTWRYVSPSFEEEPIIGYKVRVWEVDQDMSRANDTIIPV-GNTL 554
P++ +K IN T V ++W P + ++ + + + + N TI V ++
Sbjct: 384 TPTSFKVKDINSTAVKLSWHL--PGNFAKINFLCEIEIKKSNSVQEQRNVTIQGVENSSY 441
Query: 555 DADIVDLSPGKRYHMRVLAFSNGGDGRMS--SPAITFQMGEE 594
+ L+P Y R+ + + S S E
Sbjct: 442 LVALDKLNPYTLYTFRIRCSTETF-WKWSKWSNKKQHLTTEA 482
Score = 65.6 bits (159), Expect = 2e-11
Identities = 32/283 (11%), Positives = 80/283 (28%), Gaps = 30/283 (10%)
Query: 4 EGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTAT 63
G ++T C + + + +I G + N+ +S S + + T
Sbjct: 212 VGSDITFCCVSQEKVLSALIGHTNCPLIHLDGENVAIKIRNISVSASS--GTNVVFTTED 269
Query: 64 NVHGMDESKGRLIVLHGPSYYEQLPPKITIAAHRNLQLRCS------AHTEELLDVAYIW 117
N+ G Y P ++ H ++ CS +Y
Sbjct: 270 NIFGTV---------IFAGYPPDTPQQLNCETHDLKEIICSWNPGRVTALVGPRATSYTL 320
Query: 118 THNGVRIGNMDLNELETPNINIDGGLLEITNASFADAGEYECVVKSTVGKISTKTTVIV- 176
+ + L + + + +G+ + V +
Sbjct: 321 VE---SFSGKYVRLKRAEAPTNESYQLLFQMLPNQEIYNFTLNAHNPLGRSQSTILVNIT 377
Query: 177 -EGPPGLPGGVQVVEVHKTSATIQWTDGATNGRPITHYKIIARTNWNSTWFNVSEHVIGK 235
+ P P +V +++ T+ + W + +I + + +
Sbjct: 378 EKVYPHTPTSFKVKDINSTAVKLSWHLPGNFAKINFLCEIEIKKSNSVQEQRNVT----- 432
Query: 236 EVDRYTGRKEASIENVLVPWSTYEFKVIAGNELGY--GEPSSP 276
+++ L P++ Y F++ E + + S+
Sbjct: 433 IQGVENSSYLVALDK-LNPYTLYTFRIRCSTETFWKWSKWSNK 474
>1x3d_A Fibronectin type-III domain containing protein 3A; structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
b.1.2.1
Length = 118
Score = 88.6 bits (220), Expect = 3e-21
Identities = 25/123 (20%), Positives = 42/123 (34%), Gaps = 12/123 (9%)
Query: 166 GKISTKTTVIVEGPPGLPGGVQVVEVHKTSATIQWTDGATNGRPITHYKIIARTNWNSTW 225
G + + P +P ++ K S T+QW + NG I ++ + +
Sbjct: 4 GSSGAEIFTTLSCEPDIPNPPRIANRTKNSLTLQWKAPSDNGSKIQNFVLEWDEGKGNGE 63
Query: 226 FNVSEHVIGKEVDRYTGR-KEASIENVLVPWSTYEFKVIAGNELGYGEPSSPSPQYNTPA 284
F Y G K+ I L P +F++ A N+ G S Y +
Sbjct: 64 F----------CQCYMGSQKQFKITK-LSPAMGCKFRLSARNDYGTSGFSEEVLYYTSGC 112
Query: 285 DKP 287
P
Sbjct: 113 SGP 115
Score = 56.3 bits (136), Expect = 5e-10
Identities = 22/118 (18%), Positives = 39/118 (33%), Gaps = 6/118 (5%)
Query: 476 GEGPESERYLERTYRKAPQKPPSAVHIKGINPTTVHVTWRYVSPSFEEEPIIGYKVRVWE 535
G S + T P P+ I ++ + W+ +PS I + + E
Sbjct: 1 GSSGSSGAEIFTTLSCEPD-IPNPPRIANRTKNSLTLQWK--APSDNGSKIQNFVL---E 54
Query: 536 VDQDMSRANDTIIPVGNTLDADIVDLSPGKRYHMRVLAFSNGGDGRMSSPAITFQMGE 593
D+ +G+ I LSP R+ A ++ G S + + G
Sbjct: 55 WDEGKGNGEFCQCYMGSQKQFKITKLSPAMGCKFRLSARNDYGTSGFSEEVLYYTSGC 112
Score = 54.7 bits (132), Expect = 2e-09
Identities = 19/127 (14%), Positives = 37/127 (29%), Gaps = 10/127 (7%)
Query: 373 GPGPESEVVTIFSAEDMPQVAPQGVFSRGFNSTAINVTWNPIELIRENIRGRLIGHRIKY 432
G S + P P ++ + W + ++ +++
Sbjct: 1 GSSGSSGAEIFTTLSCEPD-IPNPPRIANRTKNSLTLQWKA----PSDNGSKIQNFVLEW 55
Query: 433 WKEDNPEETAVYYLSRTTRNWALIVGLQPDTKYYVKVMAYNNAGEGPESERYLERTYRKA 492
+ E Y+ + I L P ++ A N+ G SE E Y +
Sbjct: 56 DEGKGNGEFCQCYMGSQKQ--FKITKLSPAMGCKFRLSARNDYGTSGFSE---EVLYYTS 110
Query: 493 PQKPPSA 499
PS+
Sbjct: 111 GCSGPSS 117
Score = 43.2 bits (102), Expect = 2e-05
Identities = 16/134 (11%), Positives = 37/134 (27%), Gaps = 32/134 (23%)
Query: 269 GYGEPSSPSPQYNTPADKPYQAPSRIGGGGGKIGD-----LSISWEPLPREKQNAPNIYY 323
G S T + +P P+ +I + L++ W+ + +
Sbjct: 1 GSSGSSGAEIFT-TLSCEP-DIPNPP-----RIANRTKNSLTLQWKA--PSDNGSKIQNF 51
Query: 324 KIFWRKKNDTEFQSETLKEYGNVGIAVVRIPSEFY-------YTEYEVKVQAINDVGPGP 376
+ W + + + + + ++ A ND G
Sbjct: 52 VLEWDEGKGNGEFCQ-----------CYMGSQKQFKITKLSPAMGCKFRLSARNDYGTSG 100
Query: 377 ESEVVTIFSAEDMP 390
SE V +++
Sbjct: 101 FSEEVLYYTSGCSG 114
>3se4_A Interferon alpha/beta receptor 1; type I interferon signaling
complex, extracellular space, IM system receptor; HET:
NAG; 3.50A {Homo sapiens} PDB: 3se3_A*
Length = 414
Score = 94.7 bits (234), Expect = 7e-21
Identities = 53/419 (12%), Positives = 113/419 (26%), Gaps = 35/419 (8%)
Query: 178 GPPGL--PGGVQVVEVHKTSATIQWTDGATNGRPITHYKIIARTNWNSTWFNVSEHVIGK 235
G L P V+V + + ++W + +T + + W +S
Sbjct: 4 GSKNLKSPQKVEVDII-DDNFILRWNRSDESVGNVT-FSFDYQKTGMDNWIKLSG----- 56
Query: 236 EVDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPSPQYNTPADKPYQAPSR-- 293
T K L + + ++ A E + P
Sbjct: 57 -CQNITSTKCNFSSLKLNVYEEIKLRIRA--EKENTSSWYEVDSFTPFRKAQIGPPEVHL 113
Query: 294 IGGGGGKIGDLSISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETLKEYGNVGIAVVRI 353
+ +S + + + Y + K + + + +
Sbjct: 114 EAEDKAIVIHISPGTKDSVMWALDGLSFTYSLVIWKNSSGVEERIENIYSRHKIYKLS-- 171
Query: 354 PSEFYYTEYEVKVQAINDVG--PGPESEVVTIFSAEDMPQVAPQGVFSRGFNSTAINVTW 411
T Y +KV+A G S V I + + P+ + N + + W
Sbjct: 172 ----PETTYCLKVKAALLTSWKIGVYSPVHCIKTTVENELPPPENIEVSVQNQNYV-LKW 226
Query: 412 NPIELIRENIRGRLIGHRIKYWKEDNPEETAVYYLSRTTRNWA-LIVGLQPDTKYYVKVM 470
+ L + + + + Y ++V
Sbjct: 227 DYTYANMTFQVQWLHAFLKRNPGNHLYKWKQIPDCENVKTTQCVFPQNVFQKGIYLLRVQ 286
Query: 471 AYNNAGEGPESERYLERTYRKAPQKPPSAVHIKGINPTTVHVTWRY----VSPSFEEEPI 526
A + SE T +A PP +I+ ++ + H+ + ++
Sbjct: 287 ASDGNNTSFWSEEIKFDTEIQAFLLPPV-FNIRSLS-DSFHIYIGAPKQSGNTPVIQDYP 344
Query: 527 IGYKVRVWEVDQDMSRANDTIIPVGNTLDADIVDLSPGKRYHMRVLAFSNGGDGRMSSP 585
+ Y++ WE + R D + +L P Y ++ A + SS
Sbjct: 345 LIYEIIFWENTSNAERKIIE-----KKTDVTVPNLKPLTVYCVKARAHTMDEKLNKSSV 398
Score = 86.6 bits (213), Expect = 2e-18
Identities = 45/348 (12%), Positives = 95/348 (27%), Gaps = 30/348 (8%)
Query: 155 GEYECVVKSTVGKIS----TKTTVIVEGPPGLPGGVQVVEVHKTSATIQWTDGATNGRPI 210
E + +++ S + P V + E + I + G +
Sbjct: 76 EEIKLRIRAEKENTSSWYEVDSFTPFRKAQIGPPEVHL-EAEDKAIVIHISPGTKDSVMW 134
Query: 211 THYKI-----IARTNWNSTWFNVSEHVIGKEVDRYTGRKEASIENVLVPWSTYEFKVIAG 265
+ + +S E++ + L P +TY KV A
Sbjct: 135 ALDGLSFTYSLVIWKNSSGVEERIENIYSRHKIYK-----------LSPETTYCLKVKAA 183
Query: 266 NELGYGEPSSPSPQYNTPADKPYQAPSRIGGGGGKIGDLSISWEPLPREKQNAPNIYYKI 325
+ + P + + + W+ +
Sbjct: 184 LLTSWKIGVYSPVHCIKTTVENELPPPENIEVSVQNQNYVLKWDYTYANMTFQVQWLHAF 243
Query: 326 FWRKKNDTEFQSETLKEYGNVGIAVVRIPSEF-YYTEYEVKVQAINDVGPGPESEVVTIF 384
R + ++ + + + NV P Y ++VQA + SE +
Sbjct: 244 LKRNPGNHLYKWKQIPDCENVKTTQCVFPQNVFQKGIYLLRVQASDGNNTSFWSEEIKFD 303
Query: 385 SAEDMPQVAPQGVFSRGFNSTAINVTWNPIELIRENIRGRLIGHRIKYWKEDNPEETAVY 444
+ + P +S I + I+ + + I +W+ + E +
Sbjct: 304 TEIQAFLLPPVFNIRSLSDSFHIYIGAPKQSGNTPVIQDYPLIYEIIFWENTSNAERKII 363
Query: 445 YLSRTTRNWALIVGLQPDTKYYVKVMAYNNAG----EGPESERYLERT 488
+ + L+P T Y VK A+ S+ E+T
Sbjct: 364 ----EKKTDVTVPNLKPLTVYCVKARAHTMDEKLNKSSVFSDAVCEKT 407
>2ny1_B T-cell surface glycoprotein CD4; HIV, GP120, CD4, viral
protein-immune system compl; HET: NAG SUC; 1.99A {Homo
sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 2nxz_B* 2ny0_B*
2nxy_B* 2ny2_B* 2ny3_B* 2ny4_B* 2ny5_C* 2ny6_B* 3jwd_C*
3jwo_C* 1g9m_C* 1g9n_C* 1gc1_C* 1rzj_C* 1rzk_C* 3o2d_A
3cd4_A 3lqa_C* 2b4c_C* 2qad_B* ...
Length = 184
Score = 89.7 bits (222), Expect = 7e-21
Identities = 27/200 (13%), Positives = 48/200 (24%), Gaps = 44/200 (22%)
Query: 1 YAGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFE------------------- 41
+G V + C +F WK I G +
Sbjct: 6 LGKKGDTVELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQ 65
Query: 42 -NGNLLISPVSRDDSGIYSCTATNVHGMDESKGRLIVLHGPSYYEQLPPKITIAAHRNLQ 100
N L+I + +DS Y C + + + + ++L
Sbjct: 66 GNFPLIIKNLKIEDSDTYICEVEDQKEEVQLLVFGLTA---------NSDTHLLQGQSLT 116
Query: 101 LRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEITNASFADAGEYECV 160
L + V G L ++ D+G + C
Sbjct: 117 LTLESPPGSSPSV--QCRSPR-------------GKNIQGGKTLSVSQLELQDSGTWTCT 161
Query: 161 VKSTVGKISTKTTVIVEGPP 180
V K+ K ++V
Sbjct: 162 VLQNQKKVEFKIDIVVLAFQ 181
>3jz7_A MCAR, CAR, coxsackievirus and adenovirus receptor homolog; cell
adhesion molecule, immunoglobuline superfamily,
alternative splicing, cell adhesion; 2.19A {Mus
musculus} PDB: 3mj7_B* 2npl_X
Length = 214
Score = 90.1 bits (223), Expect = 1e-20
Identities = 34/209 (16%), Positives = 60/209 (28%), Gaps = 38/209 (18%)
Query: 2 AGEGGNVTIFC----NPEAAPKPKFVWKKDGNIIGSG---------------------GR 36
+G + C +PE W + GR
Sbjct: 12 KAKGETAYLPCKFTLSPEDQGPLDIEWLISPSDNQIVDQVIILYSGDKIYDNYYPDLKGR 71
Query: 37 RKIFE------NGNLLISPVSRDDSGIYSCTATNVHGMDESKGRLIVLHGPSYYEQLPPK 90
+ ++ ++ + D G Y C G+ K L VL PS +
Sbjct: 72 VHFTSNDVKSGDASINVTNLQLSDIGTYQCKVKKAPGVANKKFLLTVLVKPS-GTRCFVD 130
Query: 91 ITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEITNAS 150
+ + +L+C E L + + W + ++ + NAS
Sbjct: 131 GSEEIGNDFKLKCEP-KEGSLPLQFEWQKLSD-----SQTMPTPWLAEMTSPVISVKNAS 184
Query: 151 FADAGEYECVVKSTVGKISTKTTVIVEGP 179
+G Y C V++ VG + V P
Sbjct: 185 SEYSGTYSCTVQNRVGSDQCMLRLDVVPP 213
Score = 70.1 bits (171), Expect = 7e-14
Identities = 21/81 (25%), Positives = 34/81 (41%), Gaps = 3/81 (3%)
Query: 4 EGGNVTIFCNPEA-APKPKFVWKKDGN-IIGSGGRRKIFENGNLLISPVSRDDSGIYSCT 61
G + + C P+ + +F W+K + + + + S + SG YSCT
Sbjct: 135 IGNDFKLKCEPKEGSLPLQFEWQKLSDSQTMPTPWLAEMTSPVISVKNASSEYSGTYSCT 194
Query: 62 ATNVHGMDESKGRLIVLHGPS 82
N G D+ RL V+ PS
Sbjct: 195 VQNRVGSDQCMLRLDVVP-PS 214
Score = 49.3 bits (117), Expect = 9e-07
Identities = 13/84 (15%), Positives = 26/84 (30%), Gaps = 1/84 (1%)
Query: 131 ELETPNINIDGGLLEITNASFADAGEYECVVKSTVGKISTKTTVIVEGPPGLPGGVQVVE 190
+ ++ + +TN +D G Y+C VK G + K + V P
Sbjct: 73 HFTSNDVKSGDASINVTNLQLSDIGTYQCKVKKAPGVANKKFLLTVLVKPSGTRCFVDGS 132
Query: 191 VHKTSATIQWTDGATNGRPITHYK 214
+ + G ++
Sbjct: 133 EEIGN-DFKLKCEPKEGSLPLQFE 155
>1qr4_A Protein (tenascin); fibronectin type-III, heparin, extracellular
matrix, adhesion, fusion protein, structural protein;
2.55A {Gallus gallus} SCOP: b.1.2.1 b.1.2.1
Length = 186
Score = 88.7 bits (220), Expect = 1e-20
Identities = 23/196 (11%), Positives = 56/196 (28%), Gaps = 23/196 (11%)
Query: 393 APQGVFSRGFNSTAINVTWNPIELIRENIRGRLIGHRIKYWKEDNPEETAVYYLSRTTRN 452
P+ + T +++ W + +R+ Y +
Sbjct: 9 NPKDLEVSDPTETTLSLRWRRPV-------AKFDRYRLTYVSPSGKKNEME---IPVDST 58
Query: 453 WALIVGLQPDTKYYVKVMAYNNAGEGPESERYLERTYRKAPQKPPSAVHIKGINPTTVHV 512
++ GL T+Y + ++A + + P + I + V
Sbjct: 59 SFILRGLDAGTEYTISLVAEKGRHKSKPT----TIKGSTVVG-SPKGISFSDITENSATV 113
Query: 513 TWRYVSPSFEEEPIIGYKVRVWEVDQDMSRANDTIIPVGNTLDADIVDLSPGKRYHMRVL 572
+W + Y+V + + G+ +V L PG Y++ ++
Sbjct: 114 SWTPPRS-----RVDSYRVSYVPITGGTPN---VVTVDGSKTRTKLVKLVPGVDYNVNII 165
Query: 573 AFSNGGDGRMSSPAIT 588
+ + S +
Sbjct: 166 SVKGFEESEPISGILK 181
Score = 70.5 bits (173), Expect = 3e-14
Identities = 29/179 (16%), Positives = 53/179 (29%), Gaps = 24/179 (13%)
Query: 304 LSISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETLKEYGNVGIAVVRIPSEFYYTEYE 363
LS+ W A Y++ + + + + E V + TEY
Sbjct: 23 LSLRWRRPV-----AKFDRYRLTYVSPSGKKNEMEI-----PVDSTSFILRGLDAGTEYT 72
Query: 364 VKVQAINDVGPGPESEVVTIFSAEDMPQVAPQGVFSRGFNSTAINVTWNPIELIRENIRG 423
+ + A + + +P+G+ + V+W P R
Sbjct: 73 ISLVAEKGRHKSKPTTIKGSTVVG-----SPKGISFSDITENSATVSWTP-------PRS 120
Query: 424 RLIGHRIKYWKEDNPEETAVYYLSRTTRNWALIVGLQPDTKYYVKVMAYNNAGEGPESE 482
R+ +R+ Y V TR +V L P Y V +++ E
Sbjct: 121 RVDSYRVSYVPITGGTPNVVTVDGSKTR--TKLVKLVPGVDYNVNIISVKGFEESEPIS 177
Score = 62.5 bits (152), Expect = 2e-11
Identities = 24/207 (11%), Positives = 62/207 (29%), Gaps = 34/207 (16%)
Query: 179 PPGLPGGVQVVEVHKTSATIQWTDGATNGRPITHYKIIARTNWNSTWFNVSEHVIGKEVD 238
P ++V + +T+ +++W Y++ + + E++
Sbjct: 6 DLDNPKDLEVSDPTETTLSLRWRRPVA---KFDRYRLTYVSP-SGKK---------NEME 52
Query: 239 RYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPSPQYNTPADKPYQAPSRIGGGG 298
+ L + Y ++A +P++ T +P I
Sbjct: 53 IPVDSTSFILRG-LDAGTEYTISLVAEKGRHKSKPTTIKGS--TVVG----SPKGISFSD 105
Query: 299 GKIGDLSISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETLKEYGNVGIAVVR--IPSE 356
++SW P + Y++ + T+ G+ + +P
Sbjct: 106 ITENSATVSWTPPR-----SRVDSYRVSYVPITGGTPNVVTVD--GSKTRTKLVKLVP-- 156
Query: 357 FYYTEYEVKVQAINDVGPG-PESEVVT 382
+Y V + ++ P S ++
Sbjct: 157 --GVDYNVNIISVKGFEESEPISGILK 181
Score = 53.6 bits (129), Expect = 2e-08
Identities = 24/123 (19%), Positives = 39/123 (31%), Gaps = 14/123 (11%)
Query: 156 EYECVVKS-TVGKISTKTTVIVEGPPGLPGGVQVVEVHKTSATIQWTDGATNGRPITHYK 214
EY + + S TT+ G P G+ ++ + SAT+ WT + Y+
Sbjct: 70 EYTISLVAEKGRHKSKPTTIKGSTVVGSPKGISFSDITENSATVSWT--PPRS-RVDSYR 126
Query: 215 IIARTNWNSTWFNVSEHVIGKEVDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPS 274
+ T V + + LVP Y +I+ EP
Sbjct: 127 VSYVPITGGTP---------NVVTVDGSKTRTKLVK-LVPGVDYNVNIISVKGFEESEPI 176
Query: 275 SPS 277
S
Sbjct: 177 SGI 179
>1f2q_A High affinity immunoglobulin epsilon receptor ALP subunit;
immunoglobulin fold, glycoprotein, IGE-binding Pro
immune system; HET: NAG MAN; 2.40A {Homo sapiens} SCOP:
b.1.1.4 b.1.1.4 PDB: 1j86_A* 1rpq_A* 2y7q_A* 1f6a_A*
1j88_A* 1j89_A* 1j87_A*
Length = 176
Score = 88.4 bits (219), Expect = 1e-20
Identities = 36/179 (20%), Positives = 60/179 (33%), Gaps = 25/179 (13%)
Query: 4 EGGNVTIFCNPEAAPKP-KFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTA 62
+G NVT+ CN + W +G++ N +L I +DSG Y C
Sbjct: 18 KGENVTLTCNGNNFFEVSSTKWFHNGSLSEE-------TNSSLNIVNAKFEDSGEYKCQH 70
Query: 63 TNVHGMDESKGRLIVLHGPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGV 122
V+ + L V + + + L LRC + I+ +G
Sbjct: 71 QQVNESEPV--YLEVFSDWLLLQ--ASAEVVMEGQPLFLRCHGWRNWDV-YKVIYYKDGE 125
Query: 123 RIGNMDLNELETPNINIDGGLLEITNASFADAGEYECVVKSTVGKISTKT-TVIVEGPP 180
+ + + ITNA+ D+G Y C K ++ + V P
Sbjct: 126 ALKYWY-----------ENHNISITNATVEDSGTYYCTGKVWQLDYESEPLNITVIKAP 173
Score = 40.6 bits (95), Expect = 4e-04
Identities = 22/93 (23%), Positives = 29/93 (31%), Gaps = 16/93 (17%)
Query: 88 PPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEIT 147
PP I N+ L C+ + W HNG L I
Sbjct: 11 PPWNRIFKGENVTLTCNG-NNFFEVSSTKWFHNGSLSEE-------------TNSSLNIV 56
Query: 148 NASFADAGEYECVVKSTVGKISTKTTVIVEGPP 180
NA F D+GEY+C + S + V
Sbjct: 57 NAKFEDSGEYKCQHQQVNE--SEPVYLEVFSDW 87
>1n26_A IL-6 receptor alpha chain; transmembrane, glycoprotein,
immunoglobulin domain, cytokine; HET: NAG BMA MAN NDG;
2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.2.1 b.1.2.1 PDB:
1p9m_C 2arw_A
Length = 325
Score = 91.8 bits (227), Expect = 2e-20
Identities = 52/304 (17%), Positives = 84/304 (27%), Gaps = 28/304 (9%)
Query: 1 YAGEGGNVTIFCN-PEAAPKPKFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYS 59
+ G +VT+ C E W GS R LL+ V DSG YS
Sbjct: 17 TSLPGDSVTLTCPGVEPEDNATVHWVLRKPAAGSHPSRWAGMGRRLLLRSVQLHDSGNYS 76
Query: 60 CTATNVHGMDESKGRLIVLHGPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTH 119
C G L+V P + + N+ + L +
Sbjct: 77 CYRA---GRPAGTVHLLVDVPPEEPQLS--CFRKSPLSNVVCEWGPRSTPSLTTKAVLLV 131
Query: 120 NGVRIGNMDLNELETPNINIDGGLLEITNASFADAGEYE--CVVKSTVGKISTKTTVIV- 176
+ + + D+ Y V S+VG +KT
Sbjct: 132 RKFQNSPAEDFQEPCQYSQESQKFSCQLAVPEGDSSFYIVSMCVASSVGSKFSKTQTFQG 191
Query: 177 -----EGPPGLPGGVQVVEVHKTSATIQWTD--GATNGRPITHYKIIARTNWNSTWFNVS 229
PP V V + ++ W D + +++ R + T+
Sbjct: 192 CGILQPDPPANI-TVTAVARNPRWLSVTWQDPHSWNSSFYRLRFELRYRAERSKTF---- 246
Query: 230 EHVIGKEVDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPSP-QYNTPADKPY 288
+ I + + ++ A E G GE S SP TP +
Sbjct: 247 -----TTWMVKDLQHHCVIHD-AWSGLRHVVQLRAQEEFGQGEWSEWSPEAMGTPWTESR 300
Query: 289 QAPS 292
P+
Sbjct: 301 SPPA 304
Score = 71.4 bits (174), Expect = 1e-13
Identities = 40/279 (14%), Positives = 81/279 (29%), Gaps = 28/279 (10%)
Query: 325 IFWRKKND--TEFQSETLKEYGNVGIAVVRIPSEFYYT---EYEVKVQAINDVGPGPESE 379
+ W + S + + V++ Y+ V PE
Sbjct: 39 VHWVLRKPAAGSHPSRWAGMGRRLLLRSVQLHDSGNYSCYRAGRPAGTVHLLVDVPPEEP 98
Query: 380 VVTIFSAEDMPQVAPQGVFSRGFNSTAINVTWNPIELIRENIRGRLIGHRIKYWKEDNPE 439
++ F + + W P + L+ + + ++ +
Sbjct: 99 QLSCFRKSP---------------LSNVVCEWGPRSTPSLTTKAVLLVRKFQNSPAEDFQ 143
Query: 440 ETAVYYLSRTTRNWALIVGLQPDTKYYVKVMAYNNAGEGPESERYLERTYRKAPQKPPSA 499
E Y + L V + Y V + ++ G S+ + PP+
Sbjct: 144 EPCQYSQESQKFSCQLAVPEGDSSFYIVSMCVASSVGSK-FSKTQTFQGCGILQPDPPAN 202
Query: 500 VHIKGI--NPTTVHVTWRYVSPSFEEEPIIGYKVRVWEVDQDMSRANDTIIPVGNTLDAD 557
+ + + NP + VTW+ + +++R S+ T +
Sbjct: 203 ITVTAVARNPRWLSVTWQDPHSWNSSFYRLRFELRYRAER---SKTFTTWMVKDLQHHCV 259
Query: 558 IVDLSPGKRYHMRVLAFSNGGDGRMS--SPAITFQMGEE 594
I D G R+ +++ A G G S SP E
Sbjct: 260 IHDAWSGLRHVVQLRAQEEFGQGEWSEWSPEAMGTPWTE 298
Score = 68.7 bits (167), Expect = 8e-13
Identities = 31/216 (14%), Positives = 61/216 (28%), Gaps = 11/216 (5%)
Query: 302 GDLSISWEPLPREKQNAPNIYYKIFWRKKND-TEFQSETLKEYGNVGIAVVRIP-SEFYY 359
++ W P + + + +N E E + ++ E
Sbjct: 109 SNVVCEWGPRST--PSLTTKAVLLVRKFQNSPAEDFQEPCQYSQESQKFSCQLAVPEGDS 166
Query: 360 TEYEVKVQAINDVGPGPESEVVTIFSAEDMPQVAPQG--VFSRGFNSTAINVTWNPIELI 417
+ Y V + + VG S+ T + P V + N ++VTW
Sbjct: 167 SFYIVSMCVASSVGSK-FSKTQTFQGCGILQPDPPANITVTAVARNPRWLSVTWQDPHSW 225
Query: 418 RENIRGRLIGHRIKYWKEDNPEETAVYYLSRTTRNWALIVGLQPDTKYYVKVMAYNNAGE 477
+ + ++Y E + T +I ++ V++ A G+
Sbjct: 226 NSS--FYRLRFELRYRAERSKTFTTWMVKDLQHH--CVIHDAWSGLRHVVQLRAQEEFGQ 281
Query: 478 GPESERYLERTYRKAPQKPPSAVHIKGINPTTVHVT 513
G SE E + + P T
Sbjct: 282 GEWSEWSPEAMGTPWTESRSPPAENEVSTPMQALTT 317
>3b5h_A Cervical EMMPRIN, HAB18G/CD147; IG-like domain, cell invasion;
2.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4
Length = 184
Score = 88.2 bits (218), Expect = 2e-20
Identities = 33/179 (18%), Positives = 53/179 (29%), Gaps = 15/179 (8%)
Query: 4 EGGNVTIFCNPEAAPKPK--FVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCT 61
G + + C+ + W K G ++ S D G YSC
Sbjct: 12 LGSKILLTCSLNDSATEVTGHRWLKGGVVLKEDA----LPGQKTEFKVDSDDQWGEYSCV 67
Query: 62 ATNVHGMDESKGRLIVLHGPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNG 121
+ I LHGP + + I L C + + + + W
Sbjct: 68 FLPEPMGTAN----IQLHGPPRVKAVKSSEHINEGETAMLVCKSESVPPV-TDWAWYKIT 122
Query: 122 VRIGNMDLNELE---TPNINIDGGLLEITNASFA-DAGEYECVVKSTVGKISTKTTVIV 176
+N E + + L I N + D G+Y C S+ G T+ V
Sbjct: 123 DSEDKALMNGSESRFFVSSSQGRSELHIENLNMEADPGQYRCNGTSSKGSDQAIITLRV 181
Score = 58.5 bits (141), Expect = 4e-10
Identities = 21/88 (23%), Positives = 33/88 (37%), Gaps = 11/88 (12%)
Query: 1 YAGEGGNVTIFCNPEAAPKP-KFVWKKDGNII------GSGGRRKIFENGN---LLISPV 50
+ EG + C E+ P + W K + GS R + + L I +
Sbjct: 94 HINEGETAMLVCKSESVPPVTDWAWYKITDSEDKALMNGSESRFFVSSSQGRSELHIENL 153
Query: 51 SR-DDSGIYSCTATNVHGMDESKGRLIV 77
+ D G Y C T+ G D++ L V
Sbjct: 154 NMEADPGQYRCNGTSSKGSDQAIITLRV 181
>1vca_A VCAM-D1,2, human vascular cell adhesion molecule-1; immunoglobulin
superfamily, integrin-binding, cell adhesion protein;
1.80A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 PDB: 1ij9_A
1vsc_A
Length = 202
Score = 88.3 bits (218), Expect = 3e-20
Identities = 29/188 (15%), Positives = 57/188 (30%), Gaps = 10/188 (5%)
Query: 2 AGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCT 61
A G +V++ C+ P F W+ + +G L ++PVS + Y CT
Sbjct: 13 AQIGDSVSLTCSTTGCESPFFSWRTQIDSPLNGKVTNEGTTSTLTMNPVSFGNEHSYLCT 72
Query: 62 ATNVHGMDESKGRLIVLHGPSYYEQLPPKITIAAHRNLQLRCSAH-TEELLDVAYIWTHN 120
AT E ++ + + ++ + A + + ++CS +
Sbjct: 73 ATCESRKLEKGIQVEI-YSFPKDPEIHLSGPLEAGKPITVKCSVADVYPFDRLEIDLLKG 131
Query: 121 GVRIGNMDLNELETPNINIDGGLLEITNASFADAG-EYECVVKSTVGK-------ISTKT 172
+ + + E L D G C K + +
Sbjct: 132 DHLMKSQEFLEDADRKSLETKSLEVTFTPVIEDIGKVLVCRAKLHIDEMDSVPTVRQAVK 191
Query: 173 TVIVEGPP 180
+ V P
Sbjct: 192 ELQVYISP 199
Score = 41.3 bits (96), Expect = 4e-04
Identities = 15/96 (15%), Positives = 23/96 (23%), Gaps = 8/96 (8%)
Query: 88 PPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEIT 147
+ ++ L CS E W +D L +
Sbjct: 8 ESRYLAQIGDSVSLTCSTTGCESPFF--SWRTQ------IDSPLNGKVTNEGTTSTLTMN 59
Query: 148 NASFADAGEYECVVKSTVGKISTKTTVIVEGPPGLP 183
SF + Y C K+ V + P P
Sbjct: 60 PVSFGNEHSYLCTATCESRKLEKGIQVEIYSFPKDP 95
>2edj_A Roundabout homolog 2; KIAA1568 protein, beta sandwich, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
Length = 100
Score = 84.8 bits (210), Expect = 4e-20
Identities = 23/76 (30%), Positives = 29/76 (38%), Gaps = 1/76 (1%)
Query: 4 EGGNVTIFCNPEAAPKPKFVWKKDGN-IIGSGGRRKIFENGNLLISPVSRDDSGIYSCTA 62
G + C P P W K+G G R I E G L I + D+G Y+C A
Sbjct: 22 VDGTALLKCKATGDPLPVISWLKEGFTFPGRDPRATIQEQGTLQIKNLRISDTGTYTCVA 81
Query: 63 TNVHGMDESKGRLIVL 78
T+ G L V
Sbjct: 82 TSSSGETSWSAVLDVT 97
Score = 49.3 bits (118), Expect = 1e-07
Identities = 27/101 (26%), Positives = 38/101 (37%), Gaps = 9/101 (8%)
Query: 79 HGPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNIN 138
GP Q P T+A L+C A + L ++ W G P
Sbjct: 6 SGPPIILQGPANQTLAVDGTALLKCKATGDPLPVIS--WLKEGFTF------PGRDPRAT 57
Query: 139 I-DGGLLEITNASFADAGEYECVVKSTVGKISTKTTVIVEG 178
I + G L+I N +D G Y CV S+ G+ S + V
Sbjct: 58 IQEQGTLQIKNLRISDTGTYTCVATSSSGETSWSAVLDVTE 98
>1hnf_A CD2; T lymphocyte adhesion glycoprotein; HET: NAG; 2.50A {Homo
sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1cdb_A 1gya_A*
1qa9_A
Length = 182
Score = 87.2 bits (216), Expect = 4e-20
Identities = 29/193 (15%), Positives = 60/193 (31%), Gaps = 36/193 (18%)
Query: 1 YAGEGGNVT--IFCNPEAAPKPKFVWKKDGN------------IIGSGGRRKIFENGNLL 46
+ G ++ I + W+K + K+F+NG L
Sbjct: 10 WGALGQDINLDIPSFQMSDDIDDIKWEKTSDKKKIAQFRKEKETFKEKDTYKLFKNGTLK 69
Query: 47 ISPVSRDDSGIYSCTATNVHGMDESKGRLIVLHGPSYYEQLP-PKITIAAHRNLQLRCSA 105
I + DD IY + + G + + + E++ PKI+ N L C
Sbjct: 70 IKHLKTDDQDIYKVSIYDTKGKNVLEKIFDL----KIQERVSKPKISWTC-INTTLTCEV 124
Query: 106 HTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEITNASFADAGEYECVVKSTV 165
D +G ++ + ++ + + + +++C + V
Sbjct: 125 --MNGTDPELNLYQDGK-------------HLKLSQRVI-THKWTTSLSAKFKCTAGNKV 168
Query: 166 GKISTKTTVIVEG 178
K S+ V
Sbjct: 169 SKESSVEPVSCPE 181
>2kkq_A Myotilin; unknown function, actin-binding, cell membrane,
cytoplasm, cytoskeleton, disease mutation,
immunoglobulin domain; NMR {Homo sapiens}
Length = 116
Score = 85.1 bits (211), Expect = 5e-20
Identities = 26/95 (27%), Positives = 44/95 (46%), Gaps = 13/95 (13%)
Query: 4 EGGNVTIFCNPEAAPKPKFVWKKDGNII-GSGGRRKIFENGN----LLISPVSRDDSGIY 58
EG +V + C A P PK WK++ ++ + R ++++ LLI V++ D+G Y
Sbjct: 29 EGDSVKLECQISAIPPPKLFWKRNNEMVQFNTDRISLYQDNTGRVTLLIKDVNKKDAGWY 88
Query: 59 SCTATNVHGMDESKGRLIVLHGPSYYEQLPPKITI 93
+ +A N G+ RL V P T+
Sbjct: 89 TVSAVNEAGVTTCNTRLDV--------TARPNQTL 115
Score = 54.7 bits (132), Expect = 2e-09
Identities = 13/65 (20%), Positives = 22/65 (33%), Gaps = 1/65 (1%)
Query: 116 IWTHNGVRIGNMDLNELETPNINIDGGLLEITNASFADAGEYECVVKSTVGKISTKTTVI 175
W N + + + + N L I + + DAG Y + G + T +
Sbjct: 48 FWKRNNEMV-QFNTDRISLYQDNTGRVTLLIKDVNKKDAGWYTVSAVNEAGVTTCNTRLD 106
Query: 176 VEGPP 180
V P
Sbjct: 107 VTARP 111
>3mjg_X Beta-type platelet-derived growth factor receptor; protein-protein
complex, growth factor-receptor complex, TRA hormone
complex; HET: NDG NAG; 2.30A {Homo sapiens}
Length = 289
Score = 89.8 bits (222), Expect = 5e-20
Identities = 26/180 (14%), Positives = 52/180 (28%), Gaps = 13/180 (7%)
Query: 1 YAGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSC 60
+ E +TI C P+ + + + + Y C
Sbjct: 106 FLTEITEITIPCRVTD-PQLVVTLHEKKGDVALPVPY------DHQRGFSGIFEDRSYIC 158
Query: 61 TATNVHGMDESKGRLIVLHGPSYY--EQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWT 118
T +S + S + + N+ L C E+++ WT
Sbjct: 159 KTTIGDREVDSDAYYVYRLQVSSINVSVNAVQTVVRQGENITLMCIVIGNEVVNF--EWT 216
Query: 119 HNGVRIGNM--DLNELETPNINIDGGLLEITNASFADAGEYECVVKSTVGKISTKTTVIV 176
+ G + + + +L I +A D+G Y C V +V + + +
Sbjct: 217 YPRKESGRLVEPVTDFLLDMPYHIRSILHIPSAELEDSGTYTCNVTESVNDHQDEKAINI 276
Score = 65.5 bits (159), Expect = 7e-12
Identities = 27/235 (11%), Positives = 60/235 (25%), Gaps = 44/235 (18%)
Query: 4 EGGNVTIFCNPEAAPKPKFVWKKDGNII--GSGGRRKIFENGNLLISPVSRDDSGIYSCT 61
+ C+ VW++ + + L ++ ++ D+G Y CT
Sbjct: 14 VSSTFVLTCSGS----APVVWERMSQEPPQEMAKAQDGTFSSVLTLTNLTGLDTGEYFCT 69
Query: 62 ATNVHGMDESKGRLIVLHGPSY------YEQLPPKITIAAHRNLQLRCSAHTEELLDVAY 115
+ G++ + + + + P + I + + + C +L
Sbjct: 70 HNDSRGLETDERKRLYIFVPDPTVGFLPNDAEELFIFLTEITEITIPCRVTDPQL---VV 126
Query: 116 IWTHNGVRIGNMDLNELETPNINIDGGLLEITNASFADAGEYECVVKSTVGKI-STKTTV 174
G++ L G + Y C ++ S V
Sbjct: 127 TLHEKK---GDVALPVPYDHQRGFSG---------IFEDRSYICKTTIGDREVDSDAYYV 174
Query: 175 IVEGPPGLPGGVQVVEVH---------------KTSATIQWT-DGATNGRPITHY 213
+ V V+ +WT +GR +
Sbjct: 175 YRLQVSSINVSVNAVQTVVRQGENITLMCIVIGNEVVNFEWTYPRKESGRLVEPV 229
Score = 54.3 bits (130), Expect = 4e-08
Identities = 17/98 (17%), Positives = 29/98 (29%), Gaps = 13/98 (13%)
Query: 89 PKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEITN 148
P++ + L CS +W E+ +L +TN
Sbjct: 8 PELVLNVSSTFVLTCSGSAP------VVWERMSQEP----PQEMAKAQDGTFSSVLTLTN 57
Query: 149 ASFADAGEYECVVKSTVGKISTKTT---VIVEGPPGLP 183
+ D GEY C + G + + + V P
Sbjct: 58 LTGLDTGEYFCTHNDSRGLETDERKRLYIFVPDPTVGF 95
>3ry4_A Low affinity immunoglobulin gamma FC region recep; FC receptor,
CD32, immunoglobulin superfamily, low responder
polymorphism, cell membrane; HET: NAG; 1.50A {Homo
sapiens} PDB: 1fcg_A 3ry5_A 1h9v_A 3d5o_F* 3ry6_C*
2fcb_A
Length = 170
Score = 86.4 bits (214), Expect = 6e-20
Identities = 34/175 (19%), Positives = 58/175 (33%), Gaps = 25/175 (14%)
Query: 4 EGGNVTIFCNPEAAPKP-KFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTA 62
+ +VT+ C +P+ W +GN+I + + +DSG Y+C
Sbjct: 18 QEDSVTLTCQGARSPESDSIQWFHNGNLIPT-------HTQPSYRFKANNNDSGEYTCQT 70
Query: 63 TNVHGMDESKGRLIVLHGPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGV 122
D L VL + P + + LRC + ++ L V + NG
Sbjct: 71 GQTSLSDPV--HLTVLFEWLVLQ--TPHLEFQEGETIMLRCHSWKDKPL-VKVTFFQNGK 125
Query: 123 RIGNMDLNELETPNINIDGGLLEITNASFADAGEYECVVKSTVGKISTKT-TVIV 176
I A+ + +G+Y C S+K T+ V
Sbjct: 126 SQKFSH-----------LDPTFSIPQANHSHSGDYHCTGNIGYTLFSSKPVTITV 169
Score = 63.3 bits (154), Expect = 6e-12
Identities = 14/73 (19%), Positives = 24/73 (32%), Gaps = 6/73 (8%)
Query: 1 YAGEGGNVTIFCNPEA-APKPKFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYS 59
EG + + C+ P K + ++G + I + SG Y
Sbjct: 96 EFQEGETIMLRCHSWKDKPLVKVTFFQNGKSQKFSH-----LDPTFSIPQANHSHSGDYH 150
Query: 60 CTATNVHGMDESK 72
CT + + SK
Sbjct: 151 CTGNIGYTLFSSK 163
Score = 42.1 bits (99), Expect = 1e-04
Identities = 19/93 (20%), Positives = 27/93 (29%), Gaps = 16/93 (17%)
Query: 88 PPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEIT 147
PP I + ++ L C + W HNG I
Sbjct: 11 PPWINVLQEDSVTLTCQG-ARSPESDSIQWFHNGNLIPT-------------HTQPSYRF 56
Query: 148 NASFADAGEYECVVKSTVGKISTKTTVIVEGPP 180
A+ D+GEY C T +S + V
Sbjct: 57 KANNNDSGEYTCQTGQTS--LSDPVHLTVLFEW 87
>2eo9_A Roundabout homolog 1; beta-sandwich, IG-fold, H-ROBO-1, deleted in
U twenty twenty, neurogenesis, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 118
Score = 84.8 bits (210), Expect = 6e-20
Identities = 22/80 (27%), Positives = 32/80 (40%), Gaps = 1/80 (1%)
Query: 4 EGGNVTIFCNPEAAPKPKFVWKKDGNII-GSGGRRKIFENGNLLISPVSRDDSGIYSCTA 62
G + C +P P +W+KDG ++ R K ENG L I D+G Y+C A
Sbjct: 22 VDGTFVLSCVATGSPVPTILWRKDGVLVSTQDSRIKQLENGVLQIRYAKLGDTGRYTCIA 81
Query: 63 TNVHGMDESKGRLIVLHGPS 82
+ G + V
Sbjct: 82 STPSGEATWSAYIEVQEFGV 101
Score = 54.0 bits (130), Expect = 3e-09
Identities = 21/97 (21%), Positives = 37/97 (38%), Gaps = 9/97 (9%)
Query: 85 EQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINI-DGGL 143
Q P T+A L C A + + +W +GV + + I + G+
Sbjct: 12 RQGPVNQTVAVDGTFVLSCVATGSPVPTI--LWRKDGVLV------STQDSRIKQLENGV 63
Query: 144 LEITNASFADAGEYECVVKSTVGKISTKTTVIVEGPP 180
L+I A D G Y C+ + G+ + + V+
Sbjct: 64 LQIRYAKLGDTGRYTCIASTPSGEATWSAYIEVQEFG 100
>1x5g_A Neogenin; RGM binding, fibronectin type III domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
b.1.2.1
Length = 116
Score = 84.3 bits (209), Expect = 9e-20
Identities = 28/127 (22%), Positives = 49/127 (38%), Gaps = 11/127 (8%)
Query: 373 GPGPESEVVTIFSAEDMPQVAPQGVFSRGFNSTAINVTWNPIELIRENIRGRLIGHRIKY 432
G S V +P + + + T+I VTW + G + +++ Y
Sbjct: 1 GSSGSSGRVETQPEVQLPG-PAPNLRAYAASPTSITVTWETPV----SGNGEIQNYKLYY 55
Query: 433 WKEDNPEETAVYYLSRTTRNWALIVGLQPDTKYYVKVMAYNNAGEGPESERYLERTYRKA 492
++ +E V + + I GL+ T+Y +V+AYN G G + RT +
Sbjct: 56 MEKGTDKEQDV----DVSSHSYTINGLKKYTEYSFRVVAYNKHGPGVSTPDVAVRTLSDS 111
Query: 493 PQKPPSA 499
P S
Sbjct: 112 G--PSSG 116
Score = 77.4 bits (191), Expect = 2e-17
Identities = 27/119 (22%), Positives = 45/119 (37%), Gaps = 9/119 (7%)
Query: 476 GEGPESERYLERTYRKAPQKPPSAVHIKGINPTTVHVTWRYVSPSFEEEPIIGYKVRVWE 535
G S R + + P P + +PT++ VTW +P I YK+ E
Sbjct: 1 GSSGSSGRVETQPEVQLPG-PAPNLRAYAASPTSITVTWE--TPVSGNGEIQNYKLYYME 57
Query: 536 VDQDMSRANDTIIPVGNTLDADIVDLSPGKRYHMRVLAFSNGGDGRMSSPAITFQMGEE 594
D + D ++ I L Y RV+A++ G G S+P + + +
Sbjct: 58 KGTDKEQDVDV-----SSHSYTINGLKKYTEYSFRVVAYNKHGPGV-STPDVAVRTLSD 110
Score = 64.7 bits (158), Expect = 6e-13
Identities = 19/100 (19%), Positives = 33/100 (33%), Gaps = 12/100 (12%)
Query: 177 EGPPGLPGGVQVVEVHKTSATIQWTDGATNGRPITHYKIIARTNWNSTWFNVSEHVIGKE 236
PG ++ TS T+ W + I +YK+ +V
Sbjct: 15 VQLPGPAPNLRAYAASPTSITVTWETPVSGNGEIQNYKLYYMEKGTDKEQDVD------- 67
Query: 237 VDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSP 276
+I L ++ Y F+V+A N+ G G +
Sbjct: 68 ----VSSHSYTING-LKKYTEYSFRVVAYNKHGPGVSTPD 102
Score = 48.5 bits (116), Expect = 3e-07
Identities = 23/94 (24%), Positives = 37/94 (39%), Gaps = 22/94 (23%)
Query: 304 LSISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETLKEYGNVGIAVVRIPSEFY----- 358
++++WE P N YK+++ +K + Q V + S Y
Sbjct: 34 ITVTWET-P-VSGNGEIQNYKLYYMEKGTDKEQD-------------VDVSSHSYTINGL 78
Query: 359 --YTEYEVKVQAINDVGPGPESEVVTIFSAEDMP 390
YTEY +V A N GPG + V + + D
Sbjct: 79 KKYTEYSFRVVAYNKHGPGVSTPDVAVRTLSDSG 112
>1hng_A CD2; T lymphocyte adhesion glycoprotein; 2.80A {Rattus rattus}
SCOP: b.1.1.1 b.1.1.3
Length = 176
Score = 85.8 bits (212), Expect = 1e-19
Identities = 30/186 (16%), Positives = 55/186 (29%), Gaps = 32/186 (17%)
Query: 1 YAGEGGNVT--IFCNPEAAPKPKFVWKKDGNIIGS----------GGRRKIFENGNLLIS 48
+ G + I + W++ ++ G +I NG+L I
Sbjct: 7 WGALGHGINLNIPNFQMTDDIDEVRWERGSTLVAEFKRKMKPFLKSGAFEILANGDLKIK 66
Query: 49 PVSRDDSGIYSCTATNVHGMDESKGRLIVLHGPSYYEQLPPKITIAAHRNLQLRCSAHTE 108
++RDDSG Y+ T + +G L + E + + N L C
Sbjct: 67 NLTRDDSGTYNVTVYSTNGTRILNKALDL----RILEMVSKPMIYWECSNATLTCEV--L 120
Query: 109 ELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEITNASFADAGEYECVVKSTVGKI 168
E DV + ++ + N ++C + V +
Sbjct: 121 EGTDVELKLYQGKEHLRSLRQKTMSYQWTN--------------LRAPFKCKAVNRVSQE 166
Query: 169 STKTTV 174
S V
Sbjct: 167 SEMEVV 172
Score = 45.3 bits (107), Expect = 1e-05
Identities = 23/143 (16%), Positives = 44/143 (30%), Gaps = 19/143 (13%)
Query: 98 NLQLRCSAHTEELLDVAYIWTHNGVRI-----GNMDLNELETPNINIDGGLLEITNASFA 152
NL + T+++ +V W + + I +G L I N +
Sbjct: 15 NLNIPNFQMTDDIDEV--RWERGSTLVAEFKRKMKPFLKSGAFEILANGDLK-IKNLTRD 71
Query: 153 DAGEYECVVKSTVGKISTKTTVIVEGPPGLPGGVQVVE----------VHKTSATIQWTD 202
D+G Y V ST G + + + + E + T ++
Sbjct: 72 DSGTYNVTVYSTNGTRILNKALDLRILEMVSKPMIYWECSNATLTCEVLEGTDVELKLYQ 131
Query: 203 GATNGRPITHYKI-IARTNWNST 224
G + R + + TN +
Sbjct: 132 GKEHLRSLRQKTMSYQWTNLRAP 154
>3puc_A Titin; I-SET IG-like domain, M-BAND, transferase; 0.96A {Homo
sapiens}
Length = 99
Score = 83.1 bits (206), Expect = 1e-19
Identities = 23/77 (29%), Positives = 32/77 (41%), Gaps = 3/77 (3%)
Query: 4 EGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGN---LLISPVSRDDSGIYSC 60
P+P +W KDG I GG+ K+ E+ L I DSG+Y+C
Sbjct: 20 SDSVAKFAVKATGEPRPTAIWTKDGKAITQGGKYKLSEDKGGFFLEIHKTDTSDSGLYTC 79
Query: 61 TATNVHGMDESKGRLIV 77
T N G S +L +
Sbjct: 80 TVKNSAGSVSSSCKLTI 96
Score = 50.4 bits (121), Expect = 4e-08
Identities = 18/67 (26%), Positives = 30/67 (44%), Gaps = 11/67 (16%)
Query: 116 IWTHNGVRIGNMDLNELETPNINI--DGGL--LEITNASFADAGEYECVVKSTVGKISTK 171
IWT +G I + + D G LEI +D+G Y C VK++ G +S+
Sbjct: 39 IWTKDGKAIT-------QGGKYKLSEDKGGFFLEIHKTDTSDSGLYTCTVKNSAGSVSSS 91
Query: 172 TTVIVEG 178
+ ++
Sbjct: 92 CKLTIKA 98
>3irg_B Obscurin-like protein 1; IG-like, titin, OBSL1, complex,
alternative splicing, ATP-binding, calcium,
calmodulin-binding, cardiomyopathy; 1.30A {Homo sapiens}
PDB: 3knb_B 2wp3_O* 2wwm_C 2wwk_O
Length = 107
Score = 83.2 bits (206), Expect = 1e-19
Identities = 22/81 (27%), Positives = 33/81 (40%), Gaps = 3/81 (3%)
Query: 4 EGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGN---LLISPVSRDDSGIYSC 60
G + C P P VW+K G + + R +G LL++ D+G+Y C
Sbjct: 27 SGAEAELKCVVLGEPPPVVVWEKGGQQLAASERLSFPADGAEHGLLLTAALPTDAGVYVC 86
Query: 61 TATNVHGMDESKGRLIVLHGP 81
A N G + + VL P
Sbjct: 87 RARNAAGEAYAAAAVTVLEPP 107
Score = 53.9 bits (130), Expect = 2e-09
Identities = 22/99 (22%), Positives = 38/99 (38%), Gaps = 13/99 (13%)
Query: 86 QLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINI--DGGL 143
+ P + + + +L+C E V +W G ++ + ++ DG
Sbjct: 18 RFPRPVRVVSGAEAELKCVVLGEPPPVV--VWEKGGQQLA-------ASERLSFPADGAE 68
Query: 144 --LEITNASFADAGEYECVVKSTVGKISTKTTVIVEGPP 180
L +T A DAG Y C ++ G+ V V PP
Sbjct: 69 HGLLLTAALPTDAGVYVCRARNAAGEAYAAAAVTVLEPP 107
>2ic2_A CG9211-PA, GH03927P; IHOG, hedgehog, fibronectin type III, protein
binding; HET: MSE; 1.30A {Drosophila melanogaster} SCOP:
b.1.2.1
Length = 115
Score = 82.7 bits (204), Expect = 3e-19
Identities = 22/110 (20%), Positives = 41/110 (37%), Gaps = 5/110 (4%)
Query: 178 GPPGLPGGVQVVEVHKTSATIQWTDGATNGRPITHYKIIAR-TNWNSTWFNVSEHV---I 233
G P V + S ++W +G PI +K+ R W ++++
Sbjct: 1 GSTYPPTPPNVTRLSDESVMLRWMVPRNDGLPIVIFKVQYRMVGKRKNWQTTNDNIPYGK 60
Query: 234 GKEVDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPSPQYNTP 283
K AS+ + L P TY F+++A + S+ S ++
Sbjct: 61 PKWNSELGKSFTASVTD-LKPQHTYRFRILAVYSNNDNKESNTSAKFYLQ 109
Score = 64.6 bits (157), Expect = 7e-13
Identities = 25/110 (22%), Positives = 47/110 (42%), Gaps = 12/110 (10%)
Query: 492 APQKPPSAVHIKGINPTTVHVTWRYVSPSFEEEPIIGYKV--RVWEVDQDMSRANDTIIP 549
PP+ ++ ++ +V + W P + PI+ +KV R+ ++ ND I
Sbjct: 1 GSTYPPTPPNVTRLSDESVMLRWM--VPRNDGLPIVIFKVQYRMVGKRKNWQTTNDNIPY 58
Query: 550 --------VGNTLDADIVDLSPGKRYHMRVLAFSNGGDGRMSSPAITFQM 591
+G + A + DL P Y R+LA + D + S+ + F +
Sbjct: 59 GKPKWNSELGKSFTASVTDLKPQHTYRFRILAVYSNNDNKESNTSAKFYL 108
Score = 41.1 bits (96), Expect = 1e-04
Identities = 13/101 (12%), Positives = 33/101 (32%), Gaps = 15/101 (14%)
Query: 393 APQGVFSRGFNSTAINVTWNPIELIRENIRGRLIGHRIKY--------WK---EDNPEET 441
P + ++ + W N ++ +++Y W+ ++ P
Sbjct: 5 PPTPPNVTRLSDESVMLRWMV----PRNDGLPIVIFKVQYRMVGKRKNWQTTNDNIPYGK 60
Query: 442 AVYYLSRTTRNWALIVGLQPDTKYYVKVMAYNNAGEGPESE 482
+ A + L+P Y +++A + + ES
Sbjct: 61 PKWNSELGKSFTASVTDLKPQHTYRFRILAVYSNNDNKESN 101
Score = 37.6 bits (87), Expect = 0.002
Identities = 9/90 (10%), Positives = 21/90 (23%), Gaps = 14/90 (15%)
Query: 306 ISWEPLPREKQNAPNIYYKIFWRKKND-TEFQSETLKEYGNVGIAVVRIPSEFYY----- 359
+ W P + +K+ +R +Q+ + F
Sbjct: 21 LRWMV--PRNDGLPIVIFKVQYRMVGKRKNWQTTNDNIPYGKPKWNSELGKSFTASVTDL 78
Query: 360 ---TEYEVKVQAINDVG---PGPESEVVTI 383
Y ++ A+ S +
Sbjct: 79 KPQHTYRFRILAVYSNNDNKESNTSAKFYL 108
>4dep_C Interleukin-1 receptor accessory protein; B-trefoil,
immunoglobulin, immune system, extracellular; HET: NAG;
3.10A {Homo sapiens} PDB: 3o4o_B*
Length = 349
Score = 88.4 bits (218), Expect = 4e-19
Identities = 47/310 (15%), Positives = 82/310 (26%), Gaps = 62/310 (20%)
Query: 4 EGGNVTIFCNPEAAPKPKFVWKKDGN--------IIGSGGRRKIFENGNLLISPVSRDDS 55
+ + + +W R E L P +D+
Sbjct: 32 FEHFLKFNYSTAHSAGLTLIWYWTRQDRDLEEPINFRLPENRISKEKDVLWFRPTLLNDT 91
Query: 56 GIYSCTATNVHGMDESKGRLIVLHGPSYY---EQLPPKITIAAHRNLQLRC---SAHTEE 109
G Y+C N + L V+ S + +LP + ++ C +
Sbjct: 92 GNYTCMLRNTTYCSKVAFPLEVVQKDSCFNSPMKLPVHKLYIEYGIQRITCPNVDGYFPS 151
Query: 110 LLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEITNASFADAGEYECVVKSTV---- 165
+ W +I N N+ +G L A ++ G Y CVV
Sbjct: 152 SVKPTITWYMGCYKIQN-------FNNVIPEGMNLSFLIALISNNGNYTCVVTYPENGRT 204
Query: 166 GKISTKTTVIVEGPP--------GLPGGVQVVEVH-----------------KTSATIQW 200
++ TV V G P P V E + + W
Sbjct: 205 FHLTRTLTVKVVGSPKNAVPPVIHSPNDHVVYEKEPGEELLIPCTVYFSFLMDSRNEVWW 264
Query: 201 TDGATNGRPITHYKIIARTNWNSTWFNVSEHVIGKEVDRYTGRKEASIENVLVPWSTYEF 260
T +G+ I ++E + + T + SI+ V +
Sbjct: 265 TI---DGKKPDDITIDVT---------INESISHSRTEDETRTQILSIKKVTSEDLKRSY 312
Query: 261 KVIAGNELGY 270
A + G
Sbjct: 313 VCHARSAKGE 322
>2edd_A Netrin receptor DCC; tumor suppressor protein DCC, colorectal
cancer suppressor, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 123
Score = 82.2 bits (203), Expect = 5e-19
Identities = 24/127 (18%), Positives = 41/127 (32%), Gaps = 4/127 (3%)
Query: 373 GPGPESEVVTIFSAEDMPQVAPQGVFSRGFNSTAINVTWNPIELIRENIRGRLIGHRIKY 432
G S T P + P GV + A+ V+W + + + + +++
Sbjct: 1 GSSGSSGFPTSVPDLSTPMLPPVGVQAVALTHDAVRVSWADNSVPKNQKTSEVRLYTVRW 60
Query: 433 WKEDNPEETAVYYLSRTTRNWALIVGLQPDTKYYVKVMAYNNAGEGPESERYLERTYRKA 492
+ T+ + GL+P+T Y VM N S TY +
Sbjct: 61 -RTSFSASAKYKSEDTTSLS-YTATGLKPNTMYEFSVMVTKNRRSSTWSMTAHATTYEAS 118
Query: 493 PQKPPSA 499
P S
Sbjct: 119 G--PSSG 123
Score = 56.8 bits (137), Expect = 5e-10
Identities = 21/113 (18%), Positives = 30/113 (26%), Gaps = 5/113 (4%)
Query: 476 GEGPESERYLERTYRKAPQKPPSAVHIKGINPTTVHVTWRYVSPSFEEE--PIIGYKVRV 533
G S P PP V + V V+W S ++ + Y VR
Sbjct: 1 GSSGSSGFPTSVPDLSTPMLPPVGVQAVALTHDAVRVSWADNSVPKNQKTSEVRLYTVRW 60
Query: 534 WEVDQDMSRANDTIIPVGNTLDADIVDLSPGKRYHMRVLAFSNGGDGRMSSPA 586
++ +L L P Y V+ N S A
Sbjct: 61 RTSFSASAK---YKSEDTTSLSYTATGLKPNTMYEFSVMVTKNRRSSTWSMTA 110
Score = 50.6 bits (121), Expect = 6e-08
Identities = 21/123 (17%), Positives = 37/123 (30%), Gaps = 15/123 (12%)
Query: 169 STKTTVIVEGPPGLPGGVQVVEVHKTSATIQWTDGATNGR----PITHYKIIARTNWNST 224
+ + P P GVQ V + + + W D + + Y + RT+++++
Sbjct: 8 FPTSVPDLSTPMLPPVGVQAVALTHDAVRVSWADNSVPKNQKTSEVRLYTVRWRTSFSAS 67
Query: 225 WFNVSEHVIGKEVDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPSPQYNTPA 284
YT L P + YEF V+ S + T
Sbjct: 68 A---KYKSEDTTSLSYT------ATG-LKPNTMYEFSVMVTKNRRSSTWSMTAHAT-TYE 116
Query: 285 DKP 287
Sbjct: 117 ASG 119
Score = 48.3 bits (115), Expect = 4e-07
Identities = 19/126 (15%), Positives = 34/126 (26%), Gaps = 20/126 (15%)
Query: 274 SSPSPQYNTPADKPYQAPSRIGGGGGKIGDLS-----ISWEP--LPREKQNAPNIYYKIF 326
SS P P P + + L+ +SW +P+ ++ + Y +
Sbjct: 5 SSGFPTSVPDLSTPMLPPVGV-----QAVALTHDAVRVSWADNSVPKNQKTSEVRLYTVR 59
Query: 327 WRKKNDTEFQSETLKEYGNVGIAVVR--IPSEFYYTEYEVKVQAINDVGPGPESEVVTIF 384
WR + ++ P T YE V + S
Sbjct: 60 WRTSFSASAKYKSED--TTSLSYTATGLKP----NTMYEFSVMVTKNRRSSTWSMTAHAT 113
Query: 385 SAEDMP 390
+ E
Sbjct: 114 TYEASG 119
>1nct_A Titin; cell adhesion, glycoprotein, transmembrane, repeat, brain,
immunoglobulin fold, alternative splicing, signal,
muscle protein; NMR {Homo sapiens} SCOP: b.1.1.4 PDB:
1ncu_A 1tnm_A 1tnn_A
Length = 106
Score = 81.6 bits (202), Expect = 5e-19
Identities = 19/77 (24%), Positives = 31/77 (40%), Gaps = 3/77 (3%)
Query: 4 EGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGN---LLISPVSRDDSGIYSC 60
EG + C+ + P P W + G ++ + R ++ IS V D G YS
Sbjct: 28 EGESARFSCDTDGEPVPTVTWLRKGQVLSTSARHQVTTTKYKSTFEISSVQASDEGNYSV 87
Query: 61 TATNVHGMDESKGRLIV 77
N G E++ L +
Sbjct: 88 VVENSEGKQEAEFTLTI 104
Score = 53.5 bits (129), Expect = 4e-09
Identities = 19/99 (19%), Positives = 38/99 (38%), Gaps = 12/99 (12%)
Query: 86 QLPPKI-------TIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNIN 138
L +I T+ + + C E + V W G + +++ T
Sbjct: 12 TLAARILTKPRSMTVYEGESARFSCDTDGEPVPTV--TWLRKGQVLSTSARHQVTTTK-- 67
Query: 139 IDGGLLEITNASFADAGEYECVVKSTVGKISTKTTVIVE 177
EI++ +D G Y VV+++ GK + T+ ++
Sbjct: 68 -YKSTFEISSVQASDEGNYSVVVENSEGKQEAEFTLTIQ 105
>3shs_A HOC head outer capsid protein; immunoglobulin-like domain, phage
capsid decorative protein, interaction with bacteria;
1.95A {Enterobacteria phage RB49}
Length = 304
Score = 87.2 bits (215), Expect = 5e-19
Identities = 21/217 (9%), Positives = 54/217 (24%), Gaps = 36/217 (16%)
Query: 4 EGGNVTIFCNPEA-APKPK---FVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYS 59
G T+ P P + W KD + L ++ + +++G Y
Sbjct: 16 AGDGFTLTATVAGDEPLPSNLTYTWTKDDQPHENN-------TATLTVADATSENAGSYK 68
Query: 60 CTATNVHGMDESKGRLIVLHG--PSYYEQLPPKITIAAHRNLQLRCSAHT------EELL 111
T + M + + ++ P +++ +++L + +
Sbjct: 69 VTVQDTDTMTSVESEVFLMEEAELIVNITEPQHFYVSSQTDVELHATVKFSGGKTPADNY 128
Query: 112 DVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEITNASFADAGEYECVVKSTVGKISTK 171
++ Y W+ I + I + G Y V +
Sbjct: 129 ELHYSWSKGEDVIDT--------------TQDITIQEFTADKNGVYTVKVWGESEDSAAS 174
Query: 172 TTVIVEGPP---GLPGGVQVVEVHKTSATIQWTDGAT 205
+ + ++ +
Sbjct: 175 ASTKIMLATMNVDQDVVESKTVALGNEISLNYVVSED 211
Score = 74.5 bits (182), Expect = 1e-14
Identities = 34/210 (16%), Positives = 67/210 (31%), Gaps = 34/210 (16%)
Query: 4 EGGNVTIFCN--------PEAAPKPKFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDS 55
+V + P + + W K ++I + ++ I + D +
Sbjct: 106 SQTDVELHATVKFSGGKTPADNYELHYSWSKGEDVIDT--------TQDITIQEFTADKN 157
Query: 56 GIYSCTATNVHGMDESKGRLIVLHGPSYYEQLPPK-ITIAAHRNLQLRCSAHTEELLD-- 112
G+Y+ + ++ +Q + T+A + L + + D
Sbjct: 158 GVYTVKVWGESEDSAASASTKIMLATMNVDQDVVESKTVALGNEISLNYVVSEDIVGDSS 217
Query: 113 ------VAYIWTHNG------VRIGNMDLNELETPNINIDGGLLEITNASFADAGEYECV 160
+ Y W IG+ LE +I DG L +A++ D ++ CV
Sbjct: 218 GMPNLTIKYNWYLQREGQLSPTLIGSEVGEALEGFSITPDGHLF-KESATYDDTAKFWCV 276
Query: 161 VKSTVGKISTKTTVIVEGPPGLPGGVQVVE 190
K TV V ++VV+
Sbjct: 277 AKLYQQ--IEDETVEVAASTSRKCSMEVVK 304
>1u2h_A APEG-1, aortic preferentially expressed protein 1; structural
genomics, IG-fold I-SET, RGD motif, homophilic
adhesion, arterial smooth muscle cells; 0.96A {Homo
sapiens}
Length = 99
Score = 81.2 bits (201), Expect = 6e-19
Identities = 23/78 (29%), Positives = 34/78 (43%), Gaps = 4/78 (5%)
Query: 4 EGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGN----LLISPVSRDDSGIYS 59
EG +V + + PKP W ++ + RR E L I R D+G Y+
Sbjct: 19 EGQDVIMSIRVQGEPKPVVSWLRNRQPVRPDQRRFAEEAEGGLCRLRILAAERGDAGFYT 78
Query: 60 CTATNVHGMDESKGRLIV 77
C A N +G + + RL V
Sbjct: 79 CKAVNEYGARQCEARLEV 96
Score = 50.7 bits (122), Expect = 3e-08
Identities = 21/102 (20%), Positives = 33/102 (32%), Gaps = 15/102 (14%)
Query: 86 QLPPKI-------TIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNIN 138
+ PP ++ +++ + E V W N + E
Sbjct: 3 KAPPTFKVSLMDQSVREGQDVIMSIRVQGEPKPVV--SWLRNRQPVRPDQRRFAEEA--- 57
Query: 139 IDGGL--LEITNASFADAGEYECVVKSTVGKISTKTTVIVEG 178
+GGL L I A DAG Y C + G + + V G
Sbjct: 58 -EGGLCRLRILAAERGDAGFYTCKAVNEYGARQCEARLEVRG 98
>3sgj_C Human FCG3A receptor; receptor complex, FC receptor, antibody,
immune system; HET: NAG BMA MAN FUC; 2.20A {Homo
sapiens} PDB: 3sgk_C*
Length = 204
Score = 84.2 bits (208), Expect = 8e-19
Identities = 33/182 (18%), Positives = 55/182 (30%), Gaps = 25/182 (13%)
Query: 4 EGGNVTIFCNPEAAPKP-KFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTA 62
E +VT+ C +P+ W + ++I S + + I + DDSG Y C
Sbjct: 21 EKDSVTLKCQGAYSPEDQSTQWFHNESLISS-------QASSYFIDAATVDDSGEYRCQT 73
Query: 63 TNVHGMDESKGRLIVLHGPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGV 122
D +L V G + P+ + LRC + L + NG
Sbjct: 74 QLSTLSDPV--QLEVHIGWLLLQ--APRWVFKEEDPIHLRCHSWKNTAL-HKVTYLQNGK 128
Query: 123 RIGNMDLNELETPNINIDGGLLEITNASFADAGEYECVVK-STVGKISTKTTVIVEGPPG 181
I A+ D+G Y C + S + +
Sbjct: 129 GRKYFH-----------HNSDFYIPKATLKDSGSYFCRGLVGSKNVSSETVQITITQGLA 177
Query: 182 LP 183
+
Sbjct: 178 VS 179
Score = 60.7 bits (147), Expect = 1e-10
Identities = 13/84 (15%), Positives = 26/84 (30%), Gaps = 7/84 (8%)
Query: 1 YAGEGGNVTIFCNPEAAPKP-KFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYS 59
E + + C+ K + ++G N + I + DSG Y
Sbjct: 99 VFKEEDPIHLRCHSWKNTALHKVTYLQNGKGRKYFH-----HNSDFYIPKATLKDSGSYF 153
Query: 60 CTATNVHGMDESKG-RLIVLHGPS 82
C S+ ++ + G +
Sbjct: 154 CRGLVGSKNVSSETVQITITQGLA 177
>2ha1_A Fibronectin; beta sandwich, protein-protein complex, rigid BODY
docking, cell adhesion, structural protein; NMR {Homo
sapiens}
Length = 201
Score = 83.9 bits (207), Expect = 9e-19
Identities = 25/191 (13%), Positives = 62/191 (32%), Gaps = 28/191 (14%)
Query: 404 STAINVTWNPIELIRENIRGRLIGHRIKYWKEDNPEETAVYYLSRTTRNWALIVGLQPDT 463
+ + WN + + + +++ +++ + ++ I GL+P
Sbjct: 15 PNSHPIQWNAPQ------PSHISKYILRWRPKNSVGRWKEATIPGHLNSY-TIKGLKPGV 67
Query: 464 KYYVKVMAYNNAGEGPESERYLERTYRKAPQKP--------------PSAVHIKGINPTT 509
Y ++++ G + T P ++ + I ++
Sbjct: 68 VYEGQLISIQQYGHQEVTRFDFTTTSTSTPVTSNTVTGETTPFSPLVATSESVTEITASS 127
Query: 510 VHVTWRYVSPSFEEEPIIGYKVRVWEVDQDMSRANDTIIPVGNTLDADIVDLSPGKRYHM 569
V+W S + G++V ++ + +I DL PG++Y +
Sbjct: 128 FVVSWVSASD-----TVSGFRVEYELSEEGDEPQYLDL--PSTATSVNIPDLLPGRKYIV 180
Query: 570 RVLAFSNGGDG 580
V S G+
Sbjct: 181 NVYQISEDGEQ 191
Score = 72.0 bits (176), Expect = 1e-14
Identities = 32/193 (16%), Positives = 53/193 (27%), Gaps = 29/193 (15%)
Query: 304 LSISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETLKEYGNVGIAVVRIPSEFYYTEYE 363
I W Q + Y + WR KN E + I YE
Sbjct: 18 HPIQWNAP----QPSHISKYILRWRPKNSVGRWKEATI---PGHLNSYTIKGLKPGVVYE 70
Query: 364 VKVQAINDVGPGPESEVVTIFSAEDMPQ--------------VAPQGVFSRGFNSTAINV 409
++ +I G + ++ P + +++ V
Sbjct: 71 GQLISIQQYGHQEVTRFDFTTTSTSTPVTSNTVTGETTPFSPLVATSESVTEITASSFVV 130
Query: 410 TWNPIELIRENIRGRLIGHRIKYWKEDNPEETAVYYLSRTTRNWALIVGLQPDTKYYVKV 469
+W + G R++Y + +E L T + I L P KY V V
Sbjct: 131 SWVSAS-------DTVSGFRVEYELSEEGDEPQYLDLPSTATS-VNIPDLLPGRKYIVNV 182
Query: 470 MAYNNAGEGPESE 482
+ GE
Sbjct: 183 YQISEDGEQSLIL 195
Score = 60.4 bits (146), Expect = 1e-10
Identities = 34/221 (15%), Positives = 64/221 (28%), Gaps = 38/221 (17%)
Query: 178 GPPGLPGGVQVVEVHKTSATIQWTDGATNGRPITHYKIIARTNWNSTWFNVSEHVIGKEV 237
GP + S IQW A I+ Y + R + E I +
Sbjct: 2 GPV--EVFITETPSQPNSHPIQWN--APQPSHISKYILRWRPKNSVGR--WKEATIPGHL 55
Query: 238 DRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEP----------SSPSPQYNTPADKP 287
+ YT I+ L P YE ++I+ + G+ E S+P +
Sbjct: 56 NSYT------IKG-LKPGVVYEGQLISIQQYGHQEVTRFDFTTTSTSTPVTSNTVTGETT 108
Query: 288 YQAPSRIGG---GGGKIGDLSISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETLKEYG 344
+P +SW +++ + + + + + L
Sbjct: 109 PFSPLVATSESVTEITASSFVVSWVSAS-----DTVSGFRVEYELSEEGD-EPQYLDLPS 162
Query: 345 NVGIAVVR--IPSEFYYTEYEVKVQAINDVGPGPESEVVTI 383
+ +P +Y V V I++ G +
Sbjct: 163 TATSVNIPDLLPG----RKYIVNVYQISEDGEQSLILSTSQ 199
Score = 52.4 bits (125), Expect = 6e-08
Identities = 18/93 (19%), Positives = 31/93 (33%), Gaps = 6/93 (6%)
Query: 496 PPSAVHIKGINPTTVHVTWRYVSPSFEEEPIIGYKVRVWEVDQDMSRANDTIIPVGNTLD 555
+ P + + W PS I Y +R + R + IP G+
Sbjct: 4 VEVFITETPSQPNSHPIQWNAPQPS----HISKYILRWRPKNSV-GRWKEATIP-GHLNS 57
Query: 556 ADIVDLSPGKRYHMRVLAFSNGGDGRMSSPAIT 588
I L PG Y ++++ G ++ T
Sbjct: 58 YTIKGLKPGVVYEGQLISIQQYGHQEVTRFDFT 90
Score = 49.3 bits (117), Expect = 7e-07
Identities = 16/114 (14%), Positives = 31/114 (27%), Gaps = 12/114 (10%)
Query: 162 KSTVGKISTKTTVIVEGPPGLPGGVQVVEVHKTSATIQWTDGATNGRPITHYKIIARTNW 221
ST +T T P + V E+ +S + W ++ +++ +
Sbjct: 94 TSTPVTSNTVTGETTPFSPLVATSESVTEITASSFVVSWVSA---SDTVSGFRVEYELSE 150
Query: 222 NSTWFNVSEHVIGKEVDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSS 275
+ I + L+P Y V +E G
Sbjct: 151 EGDE--PQYLDLPSTATSVN------IPD-LLPGRKYIVNVYQISEDGEQSLIL 195
>2ede_A Netrin receptor DCC; tumor suppressor protein DCC, colorectal
cancer suppressor, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 114
Score = 80.9 bits (200), Expect = 1e-18
Identities = 32/118 (27%), Positives = 50/118 (42%), Gaps = 9/118 (7%)
Query: 385 SAEDMPQVAPQG--VFSRGFNSTAINVTWNPIELIRENIRGRLIGHRIKYWKEDN-PEET 441
S P AP+ V +R A+ V+W P G++ + + Y + N P +
Sbjct: 3 SGSSGPTSAPKDLTVITREGKPRAVIVSWQPPL----EANGKITAYILFYTLDKNIPIDD 58
Query: 442 AVYYLSRTTRNWALIVGLQPDTKYYVKVMAYNNAGEGPESERYLERTYRKAPQKPPSA 499
+ R I+ L DT YY ++ A N+ G GP S+ L RT + + P S
Sbjct: 59 WIMETISGDRLTHQIMDLNLDTMYYFRIQARNSKGVGPLSDPILFRTLKVSG--PSSG 114
Score = 66.3 bits (162), Expect = 1e-13
Identities = 23/109 (21%), Positives = 39/109 (35%), Gaps = 5/109 (4%)
Query: 488 TYRKAPQKPPSAVHIKGI--NPTTVHVTWRYVSPSFEEEPIIGYKVRVWEVDQDMSRAND 545
+ P P + + P V V+W+ P I Y +
Sbjct: 3 SGSSGPTSAPKDLTVITREGKPRAVIVSWQ--PPLEANGKITAYILFYTLDKNIPIDDWI 60
Query: 546 TIIPVGNTLDADIVDLSPGKRYHMRVLAFSNGGDGRMSSPAITFQMGEE 594
G+ L I+DL+ Y+ R+ A ++ G G +S P I F+ +
Sbjct: 61 METISGDRLTHQIMDLNLDTMYYFRIQARNSKGVGPLSDP-ILFRTLKV 108
Score = 57.4 bits (139), Expect = 2e-10
Identities = 23/113 (20%), Positives = 34/113 (30%), Gaps = 10/113 (8%)
Query: 177 EGPPGLPGGVQV--VEVHKTSATIQWTDGATNGRPITHYKIIARTNWNSTWFNVSEHVIG 234
GP P + V E + + W IT Y + + N + I
Sbjct: 6 SGPTSAPKDLTVITREGKPRAVIVSWQPPLEANGKITAYILFYTLDKNIPIDDWIMETIS 65
Query: 235 KEVDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPSPQYNTPADKP 287
R I + L + Y F++ A N G G S P + T
Sbjct: 66 ------GDRLTHQIMD-LNLDTMYYFRIQARNSKGVGPLSDPI-LFRTLKVSG 110
Score = 51.6 bits (124), Expect = 2e-08
Identities = 17/116 (14%), Positives = 39/116 (33%), Gaps = 7/116 (6%)
Query: 281 NTPADKPYQAPSRIGGGGGKIGDLSISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETL 340
++ + P AP + + ++ P + N Y +F+ + +
Sbjct: 2 SSGSSGPTSAPKDLTVITREGKPRAVIVSWQPPLEANGKITAYILFYTLDKNIPIDDWIM 61
Query: 341 KEY-GNVGIAVVR--IPSEFYYTEYEVKVQAINDVGPGPESEVVTIFSAEDMPQVA 393
+ G+ + T Y ++QA N G GP S+ + + + +
Sbjct: 62 ETISGDRLTHQIMDLNL----DTMYYFRIQARNSKGVGPLSDPILFRTLKVSGPSS 113
>1i1r_A GP130, interleukin-6 receptor beta chain; cytokine/receptor
complex, GP130; 2.40A {Homo sapiens} SCOP: b.1.2.1
b.1.2.1 b.1.2.1 PDB: 1p9m_A
Length = 303
Score = 85.6 bits (211), Expect = 2e-18
Identities = 42/296 (14%), Positives = 76/296 (25%), Gaps = 24/296 (8%)
Query: 305 SISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETLKEYGNVGIAVVRIPSEFYYTEYEV 364
+ + + NA I +K N E +V +
Sbjct: 27 VLKEKCMDYFHVNANYIVWK-----TNHFTIPKEQYTIINRTASSVTFTDIASLNIQLTC 81
Query: 365 KVQAINDVGPGPESEVVTIFSAEDMPQVAPQGVFSRGFNSTAINVTWNPIELIRENIRGR 424
+ + V I +P P+ + + W+ GR
Sbjct: 82 NILTFGQLE----QNVYGITIISGLPPEKPKNLSCIVNEGKKMRCEWDG---------GR 128
Query: 425 LIGHRIKY--WKEDNPEETAVYYLSRTTRNW-ALIVGLQPDTKYYVKVMAYNNAGEGPES 481
+ E + A R T + V V A N G+
Sbjct: 129 ETHLETNFTLKSEWATHKFADCKAKRDTPTSCTVDYSTVYFVNIEVWVEAENALGKVTSD 188
Query: 482 ERYLERTYRKAPQKPPSAVHIKGINPTTVHVTWRYVSPSFEEEPIIGYKVRVWEVDQDMS 541
+ Y+ P PP + + + + + +PS + I+ Y ++ D
Sbjct: 189 HINFDPVYKVKPN-PPHNLSVINSEELSSILKLTWTNPSIKSVIILKYNIQYRTKDASTW 247
Query: 542 RANDTIIPVGNTLDADIVDLSPGKRYHMRVLAFSNGGDGRMS--SPAITFQMGEEK 595
+ DL P Y R+ G G S S + E++
Sbjct: 248 SQIPPEDTASTRSSFTVQDLKPFTEYVFRIRCMKEDGKGYWSDWSEEASGITYEDR 303
Score = 84.1 bits (207), Expect = 5e-18
Identities = 43/313 (13%), Positives = 93/313 (29%), Gaps = 31/313 (9%)
Query: 87 LPPKITIAAHRNLQLRCSA-----HTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDG 141
P + H N C + +W N I IN
Sbjct: 10 SPESPVVQLHSNFTAVCVLKEKCMDYFHVNANYIVWKTNHFTIPKEQYTI-----INRTA 64
Query: 142 GLLEITNASFADAGEY-ECVVKSTVGKISTKTTVIVEGPPGLPGGVQVVEVHKTSATIQW 200
+ T+ + + + + + T+I PP P + + +W
Sbjct: 65 SSVTFTDIASLNIQLTCNILTFGQLEQNVYGITIISGLPPEKPKNLSCIVNEGKKMRCEW 124
Query: 201 TDGATNGRPITHYKIIARTNWNSTWFNVSEHVIGKEVDRYTGRKEASIENVLVPWSTYEF 260
G T++ + + + ++ +++ V + E
Sbjct: 125 DGG-RETHLETNFTLKSEWATHKFADCKAKR---------DTPTSCTVDYSTVYFVNIEV 174
Query: 261 KVIAGNELGYGEPSSPS--PQYNTPADKPYQAPSRIGGGGGKIGDLSISWEPLPREKQNA 318
V A N LG + P Y + P+ + L ++W ++
Sbjct: 175 WVEAENALGKVTSDHINFDPVYKVKPNPPHN--LSVINSEELSSILKLTWTNPSI--KSV 230
Query: 319 PNIYYKIFWRKKNDTEFQSETLKEYGNVGIAVVRIPSEFYYTEYEVKVQAINDVGPGP-- 376
+ Y I +R K+ + + ++ + + +TEY +++ + + G G
Sbjct: 231 IILKYNIQYRTKDASTWSQIPPEDT-ASTRSSFTVQDLKPFTEYVFRIRCMKEDGKGYWS 289
Query: 377 -ESEVVTIFSAED 388
SE + + ED
Sbjct: 290 DWSEEASGITYED 302
Score = 75.2 bits (184), Expect = 5e-15
Identities = 45/301 (14%), Positives = 87/301 (28%), Gaps = 33/301 (10%)
Query: 4 EGGNVTIFC-------NPEAAPKPKFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSG 56
N T C + VWK + I I + + +
Sbjct: 18 LHSNFTAVCVLKEKCMDYFHVNANYIVWKTNHFTIPKEQYTIINRTASSVTFTDIASLNI 77
Query: 57 IYSCTATNVH--GMDESKGRLIVLHGPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVA 114
+C + +I P + L + + ++ E L+
Sbjct: 78 QLTCNILTFGQLEQNVYGITIISGLPPEKPKNL--SCIVNEGKKMRCEWDGGRETHLETN 135
Query: 115 YIWT--HNGVRIGNMDLNELETPNINIDGGLLEITNASFADAGEYECVVKSTVGKISTKT 172
+ + + + +D + N ++ +GK+++
Sbjct: 136 FTLKSEWATHKFADCKAKRDTPTSCTVDYSTVYFVNIEV------WVEAENALGKVTSDH 189
Query: 173 TVIVEG---PPGLPGGVQV--VEVHKTSATIQWTDGATNGRPITHYKIIARTNWNSTWFN 227
P P + V E + + WT+ + I Y I RT STW
Sbjct: 190 INFDPVYKVKPNPPHNLSVINSEELSSILKLTWTNPSIKSVIILKYNIQYRTKDASTWSQ 249
Query: 228 VSEHVIGKEVDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPSP--QYNTPAD 285
+ D + R ++++ L P++ Y F++ E G G S S T D
Sbjct: 250 I------PPEDTASTRSSFTVQD-LKPFTEYVFRIRCMKEDGKGYWSDWSEEASGITYED 302
Query: 286 K 286
+
Sbjct: 303 R 303
>3s98_A Interferon alpha/beta receptor 1; human, type I interferons,
receptor chain, ifnar1, fibronect III, type I interferon
receptor chain; HET: NAG; 1.90A {Homo sapiens}
Length = 306
Score = 85.7 bits (211), Expect = 2e-18
Identities = 43/293 (14%), Positives = 93/293 (31%), Gaps = 14/293 (4%)
Query: 306 ISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETLKEYGNVGIAVVRIPSEFYYTEYEVK 365
+ W ++ N+ + ++K + + + Y E +++
Sbjct: 21 LRWNRSD---ESVGNVTFSFDYQKTGMDNWIKLSGCQNITSTKCNFSSLKLNVYEEIKLR 77
Query: 366 VQAINDVGPGPESEVVTIFSAEDMPQVAPQGVFSRGFNSTAINVTWNPIELIRENIRGRL 425
++A + EV + P+ + I+++ + + + G
Sbjct: 78 IRAEKE-NTSSWYEVDSFTPFRKAQIGPPEVHLEAEDKAIVIHISPGTKDSVMWALDGLS 136
Query: 426 IGHRIKYWKEDNPEETAVYYLSRTTRNWALIVGLQPDTKYYVKVMAYNNAG--EGPESER 483
+ + WK + E + + I L P+T Y +KV A G S
Sbjct: 137 FTYSLVIWKNSSGVEERI----ENIYSRHKIYKLSPETTYCLKVKAALLTSWKIGVYSPV 192
Query: 484 YLERTYRKAPQKPPSAVHIKGINPTTVHVTWRYVS--PSFEEEPIIGYKVRVWEVDQDMS 541
+ +T + PP + + N + W Y +F+ + + + R
Sbjct: 193 HCIKTTVENELPPPENIEVSVQN-QNYVLKWDYTYANMTFQVQWLHAFLKRNPGNHLYKW 251
Query: 542 RANDTIIPVGNTLDADIVDLSPGKRYHMRVLAFSNGGDGRMSSPAITFQMGEE 594
+ V T ++ Y +RV A S+G + S I F +
Sbjct: 252 KQIPDCENVKTTQCVFPQNVFQKGIYLLRVQA-SDGNNTSFWSEEIKFDTEIQ 303
Score = 71.5 bits (174), Expect = 1e-13
Identities = 35/308 (11%), Positives = 78/308 (25%), Gaps = 28/308 (9%)
Query: 183 PGGVQVVEVHKTSATIQWTDGATNGRPITHYKIIARTNWNSTWFNVSEHVIGKEVDRYTG 242
P V+V + + ++W + +T + + W +S +
Sbjct: 7 PQKVEVDII-DDNFILRWNRSDESVGNVT-FSFDYQKTGMDNWIKLSGC-------QNIT 57
Query: 243 RKEASIENV-LVPWSTYEFKVIAGNELGYGEPSSPSPQYNTPADKPYQAPSRIGGGGGKI 301
+ + ++ L + + ++ A E + P
Sbjct: 58 STKCNFSSLKLNVYEEIKLRIRA--EKENTSSWYEVDSFTPFRKAQIGPPEVHLEAED-- 113
Query: 302 GDLSISWEP----LPREKQNAPNIYYKIFWRKKNDTEFQSETLKEYGNVGIAVVRIPSEF 357
+ I P + + Y + K + + Y I +
Sbjct: 114 KAIVIHISPGTKDSVMWALDGLSFTYSLVIWKNSSGVEERIENI-YSRHKIYKLS----- 167
Query: 358 YYTEYEVKVQAINDVGP--GPESEVVTIFSAEDMPQVAPQGVFSRGFNSTAINVTWNPIE 415
T Y +KV+A G S V I + + P+ + N + + W+
Sbjct: 168 PETTYCLKVKAALLTSWKIGVYSPVHCIKTTVENELPPPENIEVSVQNQNYV-LKWDYTY 226
Query: 416 LIRENIRGRLIGHRIKYWKEDNPEETAVYYLSRTTRNWA-LIVGLQPDTKYYVKVMAYNN 474
L + + + + Y ++V A +
Sbjct: 227 ANMTFQVQWLHAFLKRNPGNHLYKWKQIPDCENVKTTQCVFPQNVFQKGIYLLRVQASDG 286
Query: 475 AGEGPESE 482
SE
Sbjct: 287 NNTSFWSE 294
>1x5y_A Myosin binding protein C, fast-type; fast MYBP-C, fibronectin type
III domain containing protein, cytoskeleton, muscle
contraction; NMR {Mus musculus} SCOP: b.1.2.1
Length = 111
Score = 80.1 bits (198), Expect = 2e-18
Identities = 20/106 (18%), Positives = 41/106 (38%), Gaps = 10/106 (9%)
Query: 173 TVIVEGPPGLPGGVQVVEVHKTSATIQWTDGATNGR-PITHYKIIARTNWNSTWFNVSEH 231
+ GP P + V +V T+ T++W G I Y + + W ++
Sbjct: 2 SSGSSGPTSAPQHLTVEDVTDTTTTLKWRPPDRIGAGGIDGYLVEYCLEGSEEWVPANKE 61
Query: 232 VIGKEVDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPS 277
+ + +T +++ L + F+V+ N G EP++
Sbjct: 62 PVERC--GFT------VKD-LPTGARILFRVVGVNIAGRSEPATLL 98
Score = 46.2 bits (110), Expect = 1e-06
Identities = 20/100 (20%), Positives = 33/100 (33%), Gaps = 7/100 (7%)
Query: 488 TYRKAPQKPPSAVHIKGINPTTVHVTWRYVSPSFE-EEPIIGYKVRVWEVDQDM-SRAND 545
+ P P + ++ + TT + WR P I GY V + AN
Sbjct: 3 SGSSGPTSAPQHLTVEDVTDTTTTLKWR--PPDRIGAGGIDGYLVEYCLEGSEEWVPANK 60
Query: 546 TIIPVGNTLDADIVDLSPGKRYHMRVLAFSNGGDGRMSSP 585
+ + DL G R RV+ + G ++
Sbjct: 61 EPV---ERCGFTVKDLPTGARILFRVVGVNIAGRSEPATL 97
Score = 40.0 bits (94), Expect = 3e-04
Identities = 19/118 (16%), Positives = 35/118 (29%), Gaps = 19/118 (16%)
Query: 393 APQGVFSRGFNSTAINVTWNPIELIRENIRGRLIGHRIKYWKEDNPEETAVY-YLSRTTR 451
APQ + T + W P + G + G+ ++Y E + E
Sbjct: 11 APQHLTVEDVTDTTTTLKWRPPD---RIGAGGIDGYLVEYCLEGSEEWVPANKEPVERCG 67
Query: 452 NWALIVGLQPDTKYYVKVMAYNNAGEGPESERYLERTYRKAPQKPPSAVHIKGINPTT 509
+ L + +V+ N AG + V I+ P++
Sbjct: 68 --FTVKDLPTGARILFRVVGVNIAGRSEPAT-------------LLQPVTIRESGPSS 110
Score = 33.5 bits (77), Expect = 0.041
Identities = 8/92 (8%), Positives = 23/92 (25%), Gaps = 18/92 (19%)
Query: 304 LSISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETLKEYGNVGIAVVRIPSEFY----- 358
++ W P P Y + + + E+ + +
Sbjct: 25 TTLKWRP-PDRIGAGGIDGYLVEYCLEGSEEWVP----------ANKEPVERCGFTVKDL 73
Query: 359 --YTEYEVKVQAINDVGPGPESEVVTIFSAED 388
+V +N G + ++ + +
Sbjct: 74 PTGARILFRVVGVNIAGRSEPATLLQPVTIRE 105
>3qp3_A Titin; I-SET IG-like, sarcomere, M-BAND, transferase; 2.00A {Homo
sapiens}
Length = 103
Score = 79.6 bits (197), Expect = 2e-18
Identities = 20/83 (24%), Positives = 26/83 (31%), Gaps = 4/83 (4%)
Query: 4 EGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGN---LLISPVSRDDSGIYSC 60
G N N ++ P + W +G + + L I DDSG Y
Sbjct: 22 CGQNTRFILNVQSKPTAEVKWYHNGVELQESSKIHYTNTSGVLTLEILDCHTDDSGTYRA 81
Query: 61 TATNVHGMDESKGRLIVLHGPSY 83
TN G L V G Y
Sbjct: 82 VCTNYKGEASDYATLDV-TGGDY 103
Score = 54.2 bits (131), Expect = 2e-09
Identities = 25/111 (22%), Positives = 44/111 (39%), Gaps = 14/111 (12%)
Query: 73 GRLIVLHGPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNEL 132
G + H P ++ + +N + + ++ +V W HNGV +
Sbjct: 1 GPFTLDHAPRITLRMRS-HRVPCGQNTRFILNVQSKPTAEV--KWYHNGVELQ------- 50
Query: 133 ETPNINI--DGGL--LEITNASFADAGEYECVVKSTVGKISTKTTVIVEGP 179
E+ I+ G+ LEI + D+G Y V + G+ S T+ V G
Sbjct: 51 ESSKIHYTNTSGVLTLEILDCHTDDSGTYRAVCTNYKGEASDYATLDVTGG 101
>2yr3_A Myosin light chain kinase, smooth muscle; IG domain, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
Length = 99
Score = 79.3 bits (196), Expect = 3e-18
Identities = 18/74 (24%), Positives = 26/74 (35%)
Query: 4 EGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTAT 63
EG + + C+ P P+ W +G I L I +D G Y+C A
Sbjct: 25 EGQDFVLQCSVRGTPVPRITWLLNGQPIQYARSTCEAGVAELHIQDALPEDHGTYTCLAE 84
Query: 64 NVHGMDESKGRLIV 77
N G + V
Sbjct: 85 NALGQVSCSAWVTV 98
Score = 48.5 bits (116), Expect = 2e-07
Identities = 16/62 (25%), Positives = 24/62 (38%), Gaps = 8/62 (12%)
Query: 116 IWTHNGVRIGNMDLNELETPNINIDG-GLLEITNASFADAGEYECVVKSTVGKISTKTTV 174
W NG I + G L I +A D G Y C+ ++ +G++S V
Sbjct: 44 TWLLNGQPIQ-------YARSTCEAGVAELHIQDALPEDHGTYTCLAENALGQVSCSAWV 96
Query: 175 IV 176
V
Sbjct: 97 TV 98
>1fnl_A Low affinity immunoglobulin gamma FC region receptor III-B; beta
sandwich, immunoglobulin-like, immune system receptor;
1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1e4j_A
1e4k_C* 1t83_C* 1t89_C* 3ay4_C*
Length = 175
Score = 81.8 bits (202), Expect = 3e-18
Identities = 32/175 (18%), Positives = 54/175 (30%), Gaps = 25/175 (14%)
Query: 4 EGGNVTIFCNPEAAPKP-KFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTA 62
E +VT+ C +P+ W + ++I S + + I + +DSG Y C
Sbjct: 21 EKDSVTLKCQGAYSPEDNSTQWFHNESLISS-------QASSYFIDAATVNDSGEYRCQT 73
Query: 63 TNVHGMDESKGRLIVLHGPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGV 122
D +L V G + P+ + LRC + L + NG
Sbjct: 74 NLSTLSDPV--QLEVHIGWLLLQ--APRWVFKEEDPIHLRCHSWKNTALH-KVTYLQNGK 128
Query: 123 RIGNMDLNELETPNINIDGGLLEITNASFADAGEYECVVKSTVGKI-STKTTVIV 176
I A+ D+G Y C + S + +
Sbjct: 129 DRKYFH-----------HNSDFHIPKATLKDSGSYFCRGLVGSKNVSSETVNITI 172
Score = 58.3 bits (141), Expect = 4e-10
Identities = 12/73 (16%), Positives = 21/73 (28%), Gaps = 6/73 (8%)
Query: 1 YAGEGGNVTIFCNPEA-APKPKFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYS 59
E + + C+ K + ++G N + I + DSG Y
Sbjct: 99 VFKEEDPIHLRCHSWKNTALHKVTYLQNGKDRKYFH-----HNSDFHIPKATLKDSGSYF 153
Query: 60 CTATNVHGMDESK 72
C S+
Sbjct: 154 CRGLVGSKNVSSE 166
Score = 42.9 bits (101), Expect = 8e-05
Identities = 21/128 (16%), Positives = 40/128 (31%), Gaps = 17/128 (13%)
Query: 88 PPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEIT 147
P ++ ++ L+C D + W HN I + I
Sbjct: 14 PQWYSVLEKDSVTLKCQG-AYSPEDNSTQWFHNESLISS-------------QASSYFID 59
Query: 148 NASFADAGEYECVVKSTVGKISTKTTVIVEGPPGLPGGVQVVEVHKTSATIQ-WTDGATN 206
A+ D+GEY C + S + V L + V + ++ + T
Sbjct: 60 AATVNDSGEYRCQTNLSTL--SDPVQLEVHIGWLLLQAPRWVFKEEDPIHLRCHSWKNTA 117
Query: 207 GRPITHYK 214
+T+ +
Sbjct: 118 LHKVTYLQ 125
>2dm2_A Palladin; beta-sandwich, KIAA0992, actin-associated scaffold,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 110
Score = 78.6 bits (194), Expect = 7e-18
Identities = 27/79 (34%), Positives = 33/79 (41%), Gaps = 5/79 (6%)
Query: 4 EGGNVTIFCNPEAAPKPKFVWKKDGN-IIGSGGRRKIFENGN----LLISPVSRDDSGIY 58
EG VT C PKPK W KDG I I + + L + + DD G Y
Sbjct: 22 EGMPVTFTCRVAGNPKPKIYWFKDGKQISPKSDHYTIQRDLDGTCSLHTTASTLDDDGNY 81
Query: 59 SCTATNVHGMDESKGRLIV 77
+ A N G GRL+V
Sbjct: 82 TIMAANPQGRISCTGRLMV 100
Score = 53.1 bits (128), Expect = 6e-09
Identities = 13/69 (18%), Positives = 25/69 (36%), Gaps = 1/69 (1%)
Query: 116 IWTHNGVRIGNMDLNELETPNINIDGGLLEITNASFADAGEYECVVKSTVGKISTKTTVI 175
W +G +I + + L T ++ D G Y + + G+IS ++
Sbjct: 41 YWFKDGKQI-SPKSDHYTIQRDLDGTCSLHTTASTLDDDGNYTIMAANPQGRISCTGRLM 99
Query: 176 VEGPPGLPG 184
V+ P
Sbjct: 100 VQAVNSGPS 108
>3kvq_A Vascular endothelial growth factor receptor 2; vegfr2,
angiogenesis, ATP-binding, developmental protein,
differentiation, glycoprotein; 2.70A {Homo sapiens}
Length = 108
Score = 78.5 bits (194), Expect = 7e-18
Identities = 21/90 (23%), Positives = 39/90 (43%), Gaps = 9/90 (10%)
Query: 4 EGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFE-NGNLLISPVSRDDSGIYSCTA 62
G ++ + C P P+ +W KD + + + N NL I V ++D G+Y+C A
Sbjct: 24 IGESIEVSCTASGNPPPQIMWFKDNETLVEDSGIVLKDGNRNLTIRRVRKEDEGLYTCQA 83
Query: 63 TNVHGMDESKGRLIVLHGPSYYEQLPPKIT 92
+V G + + I+ + + T
Sbjct: 84 CSVLGCAKVEAFFII--------EGAQEKT 105
Score = 58.9 bits (143), Expect = 6e-11
Identities = 20/105 (19%), Positives = 37/105 (35%), Gaps = 18/105 (17%)
Query: 85 EQLPPKI-------TIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNI 137
E++ P I T + ++++ C+A + +W + + +E I
Sbjct: 7 ERVAPTITGNLENQTTSIGESIEVSCTASGNPPPQI--MWFKDNETL-------VEDSGI 57
Query: 138 NI--DGGLLEITNASFADAGEYECVVKSTVGKISTKTTVIVEGPP 180
+ L I D G Y C S +G + I+EG
Sbjct: 58 VLKDGNRNLTIRRVRKEDEGLYTCQACSVLGCAKVEAFFIIEGAQ 102
>1g1c_A Immunoglobulin-like domain I1 from titin; immunoglobulin domain,
beta-sandwhich, I-SET, structural protein; 2.10A {Homo
sapiens} SCOP: b.1.1.4
Length = 99
Score = 78.1 bits (193), Expect = 8e-18
Identities = 20/80 (25%), Positives = 31/80 (38%), Gaps = 4/80 (5%)
Query: 2 AGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGN----LLISPVSRDDSGI 57
G+G + P P+ W K+G I R + + L+I V+ +DS
Sbjct: 17 VGQGSDAHFRVRVVGKPDPECEWYKNGVKIERSDRIYWYWPEDNVCELVIRDVTGEDSAS 76
Query: 58 YSCTATNVHGMDESKGRLIV 77
A N+ G S L+V
Sbjct: 77 IMVKAINIAGETSSHAFLLV 96
Score = 49.2 bits (118), Expect = 9e-08
Identities = 13/65 (20%), Positives = 25/65 (38%), Gaps = 6/65 (9%)
Query: 116 IWTHNGVRIGNMDLNELETPNINIDGGL--LEITNASFADAGEYECVVKSTVGKISTKTT 173
W NGV+I D P + + L I + + D+ + G+ S+
Sbjct: 38 EWYKNGVKIERSDRIYWYWP----EDNVCELVIRDVTGEDSASIMVKAINIAGETSSHAF 93
Query: 174 VIVEG 178
++V+
Sbjct: 94 LLVQA 98
>1fhg_A Telokin; immunoglobulin fold, beta barrel, contractIle protein;
2.00A {Meleagris gallopavo} SCOP: b.1.1.4 PDB: 1tlk_A
Length = 154
Score = 79.5 bits (196), Expect = 1e-17
Identities = 24/93 (25%), Positives = 33/93 (35%), Gaps = 5/93 (5%)
Query: 4 EGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGN----LLISPVSRDDSGIYS 59
EG C E P P+ +W KD N + +I + L IS V DD Y+
Sbjct: 55 EGSAARFDCKVEGYPDPEVMWFKDDNPVKESRHFQIDYDEEGNCSLTISEVCGDDDAKYT 114
Query: 60 CTATNVHGMDESKGRLIVLHGPSYYEQLPPKIT 92
C A N G L+V + +
Sbjct: 115 CKAVNSLGEATCTAELLV-ETMGKEGEGEGEGE 146
Score = 59.5 bits (144), Expect = 1e-10
Identities = 21/143 (14%), Positives = 49/143 (34%), Gaps = 16/143 (11%)
Query: 47 ISPVS-RDDSGIYSCTATNVHGMDESKGRLIVLHGPSYYEQLPPK-------ITIAAHRN 98
IS +S R SG + N + ++ L + + P + +
Sbjct: 1 ISGMSGRKASGSSPTSPINANKVENEDAFLEEVAEEK--PHVKPYFTKTILDMEVVEGSA 58
Query: 99 LQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGL-LEITNASFADAGEY 157
+ C +V +W + + +++ + +G L I+ D +Y
Sbjct: 59 ARFDCKVEGYPDPEV--MWFKDDNPVKESRHFQIDY---DEEGNCSLTISEVCGDDDAKY 113
Query: 158 ECVVKSTVGKISTKTTVIVEGPP 180
C +++G+ + ++VE
Sbjct: 114 TCKAVNSLGEATCTAELLVETMG 136
>2dm3_A KIAA0992 protein, palladin; beta-sandwich, myopalladin,
actin-associated scaffold, structural genomics, NPPSFA;
NMR {Homo sapiens}
Length = 110
Score = 77.4 bits (191), Expect = 2e-17
Identities = 26/83 (31%), Positives = 36/83 (43%), Gaps = 4/83 (4%)
Query: 4 EGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGN----LLISPVSRDDSGIYS 59
EG + C P P W+ DG + K+ N L+I PV+ D+GIY+
Sbjct: 23 EGKLCRMDCKVSGLPTPDLSWQLDGKPVRPDSAHKMLVRENGVHSLIIEPVTSRDAGIYT 82
Query: 60 CTATNVHGMDESKGRLIVLHGPS 82
C ATN G + L+V S
Sbjct: 83 CIATNRAGQNSFSLELVVAAKES 105
Score = 53.1 bits (128), Expect = 6e-09
Identities = 21/116 (18%), Positives = 37/116 (31%), Gaps = 19/116 (16%)
Query: 80 GPSYYEQLPPKI-------TIAAHRNLQLRCSAH---TEELLDVAYIWTHNGVRIGNMDL 129
G S P T+ + ++ C T +L W +G +
Sbjct: 1 GSSGSSGFRPHFLQAPGDLTVQEGKLCRMDCKVSGLPTPDL-----SWQLDGKPVRP--- 52
Query: 130 NELETPNINIDGG-LLEITNASFADAGEYECVVKSTVGKISTKTTVIVEGPPGLPG 184
+ + +G L I + DAG Y C+ + G+ S ++V P
Sbjct: 53 DSAHKMLVRENGVHSLIIEPVTSRDAGIYTCIATNRAGQNSFSLELVVAAKESGPS 108
>1wit_A Twitchin 18TH IGSF module; immunoglobulin superfamily, I SET,
muscle protein; NMR {Caenorhabditis elegans} SCOP:
b.1.1.4 PDB: 1wiu_A
Length = 93
Score = 76.6 bits (189), Expect = 2e-17
Identities = 16/77 (20%), Positives = 24/77 (31%), Gaps = 3/77 (3%)
Query: 4 EGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGN---LLISPVSRDDSGIYSC 60
G + + AP P W + + + + R DSG Y
Sbjct: 16 AGFTHNLEVDFIGAPDPTATWTVGDSGAALAPELLVDAKSSTTSIFFPSAKRADSGNYKL 75
Query: 61 TATNVHGMDESKGRLIV 77
N G DE+ +IV
Sbjct: 76 KVKNELGEDEAIFEVIV 92
Score = 48.1 bits (115), Expect = 3e-07
Identities = 20/98 (20%), Positives = 31/98 (31%), Gaps = 12/98 (12%)
Query: 87 LPPKI-------TIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINI 139
L PKI I A L WT ++ +
Sbjct: 1 LKPKILTASRKIKIKAGFTHNLEVDFIGAPDPTA--TWTVGDSGAALAPELLVDAKS--- 55
Query: 140 DGGLLEITNASFADAGEYECVVKSTVGKISTKTTVIVE 177
+ +A AD+G Y+ VK+ +G+ VIV+
Sbjct: 56 STTSIFFPSAKRADSGNYKLKVKNELGEDEAIFEVIVQ 93
>2kdg_A Myotilin; immonoglobulin domain, actin-binding, structural
protein, cell membrane, cytoplasm, cytoskeleton,
disease mutation, immunoglobulin domain; NMR {Homo
sapiens}
Length = 100
Score = 76.2 bits (188), Expect = 3e-17
Identities = 20/79 (25%), Positives = 29/79 (36%), Gaps = 4/79 (5%)
Query: 4 EGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGN----LLISPVSRDDSGIYS 59
EG + P P W +G + S K+ + L+ V D+G Y+
Sbjct: 19 EGRFCRMDFKVSGLPAPDVSWYLNGRTVQSDDLHKMIVSEKGLHSLIFEVVRASDAGAYA 78
Query: 60 CTATNVHGMDESKGRLIVL 78
C A N G +L VL
Sbjct: 79 CVAKNRAGEATFTVQLDVL 97
Score = 47.7 bits (114), Expect = 3e-07
Identities = 17/65 (26%), Positives = 28/65 (43%), Gaps = 6/65 (9%)
Query: 116 IWTHNGVRIGNMDLNELETPNINIDGGL--LEITNASFADAGEYECVVKSTVGKISTKTT 173
W NG + + DL+++ + GL L +DAG Y CV K+ G+ +
Sbjct: 38 SWYLNGRTVQSDDLHKMIVS----EKGLHSLIFEVVRASDAGAYACVAKNRAGEATFTVQ 93
Query: 174 VIVEG 178
+ V
Sbjct: 94 LDVLA 98
>1bqu_A Protein (GP130); cytokine receptor, glycoprotein 130, interleukine
6 R beta subunit, signaling protein; 2.00A {Homo
sapiens} SCOP: b.1.2.1 b.1.2.1 PDB: 1pvh_A 1bj8_A
Length = 215
Score = 79.6 bits (196), Expect = 4e-17
Identities = 28/205 (13%), Positives = 53/205 (25%), Gaps = 9/205 (4%)
Query: 393 APQGVFSRGFNSTAINVTWNPIELIRENIRGRLIGHRIKYWKEDNPEETAVYYLSRTTRN 452
P+ + + W+ +K + T
Sbjct: 10 KPKNLSCIVNEGKKMRCEWDG-----GRETHLETNFTLKSEWATHKFADCKAKRDTPTSC 64
Query: 453 WALIVGLQPDTKYYVKVMAYNNAGEGPESERYLERTYRKAPQKPPSAVHIKGINPTTVHV 512
+ V V A N G+ + Y+ P PP + + + +
Sbjct: 65 T-VDYSTVYFVNIEVWVEAENALGKVTSDHINFDPVYKVKPN-PPHNLSVINSEELSSIL 122
Query: 513 TWRYVSPSFEEEPIIGYKVRVWEVDQDMSRANDTIIPVGNTLDADIVDLSPGKRYHMRVL 572
+ +PS + I+ Y ++ D + DL P Y R+
Sbjct: 123 KLTWTNPSIKSVIILKYNIQYRTKDASTWSQIPPEDTASTRSSFTVQDLKPFTEYVFRIR 182
Query: 573 AFSNGGDGRMS--SPAITFQMGEEK 595
G G S S + E++
Sbjct: 183 CMKEDGKGYWSDWSEEASGITYEDR 207
Score = 70.8 bits (173), Expect = 5e-14
Identities = 35/202 (17%), Positives = 68/202 (33%), Gaps = 17/202 (8%)
Query: 303 DLSISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETLKEYGNVGIAVVRIPSEFYYTEY 362
+ W+ ++ + + K + + S Y+
Sbjct: 23 KMRCEWDG---GRETHLETNFTLKSEWATHK---FADCKAKRDTPTSCTVDYSTVYFVNI 76
Query: 363 EVKVQAINDVGPGPESEVVTIFSAEDMPQVAPQG--VFSRGFNSTAINVTWNPIELIREN 420
EV V+A N +G S+ + + P V + S+ + +TW
Sbjct: 77 EVWVEAENALGKV-TSDHINFDPVYKVKPNPPHNLSVINSEELSSILKLTWTN----PSI 131
Query: 421 IRGRLIGHRIKYWKEDNPEETAVYYLS-RTTRNWALIVGLQPDTKYYVKVMAYNNAGEG- 478
++ + I+Y +D + + +TR+ + L+P T+Y ++ G+G
Sbjct: 132 KSVIILKYNIQYRTKDASTWSQIPPEDTASTRSSFTVQDLKPFTEYVFRIRCMKEDGKGY 191
Query: 479 --PESERYLERTYRKAPQKPPS 498
SE TY P K PS
Sbjct: 192 WSDWSEEASGITYEDRPSKEPS 213
Score = 67.3 bits (164), Expect = 6e-13
Identities = 33/222 (14%), Positives = 70/222 (31%), Gaps = 22/222 (9%)
Query: 179 PPGLPGGVQVVEVHKTSATIQWTDGATNGRPITHYKIIARTNWNSTWFNVSEHVIGKEVD 238
PP P + + +W G T++ + + + ++
Sbjct: 7 PPEKPKNLSCIVNEGKKMRCEWDGG-RETHLETNFTLKSEWATHKFADCKAKR------- 58
Query: 239 RYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPSPQYNTPADKPYQAPS---RIG 295
+++ V + E V A N LG + P K P +
Sbjct: 59 --DTPTSCTVDYSTVYFVNIEVWVEAENALG---KVTSDHINFDPVYKVKPNPPHNLSVI 113
Query: 296 GGGGKIGDLSISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETLKEYGNVGIAVVRIPS 355
L ++W ++ + Y I +R K+ + + ++ + +
Sbjct: 114 NSEELSSILKLTWTNPSI--KSVIILKYNIQYRTKDASTWSQIPPEDT-ASTRSSFTVQD 170
Query: 356 EFYYTEYEVKVQAINDVGPG---PESEVVTIFSAEDMPQVAP 394
+TEY +++ + + G G SE + + ED P P
Sbjct: 171 LKPFTEYVFRIRCMKEDGKGYWSDWSEEASGITYEDRPSKEP 212
Score = 55.8 bits (134), Expect = 5e-09
Identities = 32/140 (22%), Positives = 59/140 (42%), Gaps = 14/140 (10%)
Query: 160 VVKSTVGKISTKT---TVIVEGPPGLPGGVQV--VEVHKTSATIQWTDGATNGRPITHYK 214
++ +GK+++ + + P P + V E + + WT+ + I Y
Sbjct: 81 EAENALGKVTSDHINFDPVYKVKPNPPHNLSVINSEELSSILKLTWTNPSIKSVIILKYN 140
Query: 215 IIARTNWNSTWFNVSEHVIGKEVDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPS 274
I RT STW + D + R ++++ L P++ Y F++ E G G S
Sbjct: 141 IQYRTKDASTWSQIPP------EDTASTRSSFTVQD-LKPFTEYVFRIRCMKEDGKGYWS 193
Query: 275 SPSPQYN--TPADKPYQAPS 292
S + + T D+P + PS
Sbjct: 194 DWSEEASGITYEDRPSKEPS 213
>2e3v_A Neural cell adhesion molecule 1, 140 kDa isoform; NCAM, N-CAM 1,
NCAM-120, CD56 antigen, membra protein, glycoprotein,
structural genomics, NPPSFA; HET: PGE BTB; 1.95A {Homo
sapiens}
Length = 122
Score = 76.7 bits (189), Expect = 4e-17
Identities = 36/128 (28%), Positives = 53/128 (41%), Gaps = 17/128 (13%)
Query: 177 EGPPGLPGGVQVVEVHKTSATIQWTD-GATNGRPITHYKIIART----NWNSTWFNVSEH 231
P P + VE + ++A +Q+ + AT G PI YK R W+S W++ E
Sbjct: 5 SSGPSSPS-IDQVEPYSSTAQVQFDEPEATGGVPILKYKAEWRAVGEEVWHSKWYDAKEA 63
Query: 232 VIGKEVDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPSPQYNTPADKPYQAP 291
+ +I L P +TY ++ A N G GE S+ S P +P AP
Sbjct: 64 SM---------EGIVTIVG-LKPETTYAVRLAALNGKGLGEISAASEFKTQPVREP-SAP 112
Query: 292 SRIGGGGG 299
G G
Sbjct: 113 KLEGSGPS 120
Score = 51.7 bits (124), Expect = 2e-08
Identities = 20/105 (19%), Positives = 34/105 (32%), Gaps = 2/105 (1%)
Query: 492 APQKPPSAVHIKGINPTTVHVTWRYVSPSFE-EEPIIGYKVRVWEVD-QDMSRANDTIIP 549
+ PS+ I + P + ++ P PI+ YK V +
Sbjct: 3 SGSSGPSSPSIDQVEPYSSTAQVQFDEPEATGGVPILKYKAEWRAVGEEVWHSKWYDAKE 62
Query: 550 VGNTLDADIVDLSPGKRYHMRVLAFSNGGDGRMSSPAITFQMGEE 594
IV L P Y +R+ A + G G +S+ +
Sbjct: 63 ASMEGIVTIVGLKPETTYAVRLAALNGKGLGEISAASEFKTQPVR 107
Score = 47.5 bits (113), Expect = 7e-07
Identities = 22/114 (19%), Positives = 38/114 (33%), Gaps = 3/114 (2%)
Query: 282 TPADKPYQAPSRIGGGGGKIGDLSISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETLK 341
+ + P +PS + ++ P P + YK WR + + S+
Sbjct: 3 SGSSGP-SSPSIDQVEPYS-STAQVQFDE-PEATGGVPILKYKAEWRAVGEEVWHSKWYD 59
Query: 342 EYGNVGIAVVRIPSEFYYTEYEVKVQAINDVGPGPESEVVTIFSAEDMPQVAPQ 395
+V I T Y V++ A+N G G S + AP+
Sbjct: 60 AKEASMEGIVTIVGLKPETTYAVRLAALNGKGLGEISAASEFKTQPVREPSAPK 113
Score = 45.9 bits (109), Expect = 3e-06
Identities = 24/116 (20%), Positives = 48/116 (41%), Gaps = 24/116 (20%)
Query: 404 STAINVTWN--------PIELIRENIRGRLIGHRIKYWKEDNPEETAVYYLSR--TTRNW 453
S+ V ++ PI + ++ ++ + +Y ++ +
Sbjct: 20 SSTAQVQFDEPEATGGVPI-----------LKYKAEWRAVGEEVWHSKWYDAKEASMEGI 68
Query: 454 ALIVGLQPDTKYYVKVMAYNNAGEGPESERYLERTYRKAPQKPPSAVHIKGINPTT 509
IVGL+P+T Y V++ A N G G S ++ P + PSA ++G P++
Sbjct: 69 VTIVGLKPETTYAVRLAALNGKGLGEISA---ASEFKTQPVREPSAPKLEGSGPSS 121
>2gys_A Cytokine receptor common beta chain; dimer of interlocking chains
of fibronectin-III domains, FOU fibronectin-III domains
PER chain; HET: NAG FUC BMA NDG; 2.70A {Homo sapiens}
SCOP: b.1.2.1 b.1.2.1 b.1.2.1 b.1.2.1 PDB: 1gh7_A*
3cxe_A* 1egj_A* 1c8p_A
Length = 419
Score = 83.1 bits (204), Expect = 4e-17
Identities = 49/329 (14%), Positives = 107/329 (32%), Gaps = 40/329 (12%)
Query: 173 TVIVEGPPGLPGGVQVVEVHKTSATIQWTDGATNGR------PITHYKIIARTNWNSTWF 226
T+ P P +Q+ + + W+ + + ++++ + +S W
Sbjct: 102 TLTQHVQPPEPRDLQISTD-QDHFLLTWSVALGSPQSHWLSPGDLEFEVVYKRLQDS-WE 159
Query: 227 NVSEHVIGKEVDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPSP----QYNT 282
+ + + L+P STY +V G PS
Sbjct: 160 DAAILLSNTSQATLGPEH-------LMPSSTYVARVRTRLAPGSRLSGRPSKWSPEVCWD 212
Query: 283 PADKPYQAPSRIGGGGGKIGDLSISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETLKE 342
P + LS SWE K+ A ++ + +F++ D +E
Sbjct: 213 SQPGDEAQPQNLECFFDGAAVLSCSWEV---RKEVASSVSFGLFYKPSPDAGSAVLLREE 269
Query: 343 YGNVGIAVVRIPSEFYYTEYEVKVQAINDVGPG-------PESEVVTIFSAEDMPQVAPQ 395
+ V+R +T + ++ + G P I S+ ++ P
Sbjct: 270 ECSP---VLREGLGSLHTRHHCQIPVPDPATHGQYIVSVQPRRAEKHIKSSVNIQMAPPS 326
Query: 396 GVFSRGFNSTAINVTWNPIELIRENIRGRLIGHRIKYWKEDNPEETAVYYLSRTTRNWAL 455
++ + + ++ W +++ E+I I+Y K+ + + +
Sbjct: 327 LQVTK--DGDSYSLRWETMKMRYEHID---HTFEIQYRKDTATWKD-SKTETLQNAHSMA 380
Query: 456 IVGLQPDTKYYVKV--MAYNNAGEGPESE 482
+ L+P T+Y+ +V G SE
Sbjct: 381 LPALEPSTRYWARVRVRTSRTGYNGIWSE 409
Score = 76.2 bits (186), Expect = 6e-15
Identities = 47/414 (11%), Positives = 110/414 (26%), Gaps = 36/414 (8%)
Query: 197 TIQWTDGATNGRPITHYKIIARTNWNSTWFNVSEHVIGKEVDRYTGRKEASIENVLVPWS 256
T +W D R + +I R N + VS + ++P
Sbjct: 20 TCRWADTQDAQRL-VNVTLIRRVNEDL-LEPVSCDLSDDMPWSACPHPRCVPRRCVIPCQ 77
Query: 257 TYEFKVIAGNELGYGEPSSPSPQYNTPADKPYQAPSRIGGGGGKIGDLSISWEPLPREKQ 316
++ + P P + + ++W Q
Sbjct: 78 SFVVTDVDYFSFQPDRPLGTRLTVTLTQHVQPPEPRDLQISTDQ-DHFLLTWSVALGSPQ 136
Query: 317 ----NAPNIYYKIFWRKKNDTEFQSETLKEYGNVGIAVVRIPSEFYYTEYEVKVQAINDV 372
+ ++ +++ +++ D+ + L N A + + Y +V+
Sbjct: 137 SHWLSPGDLEFEVVYKRLQDSWEDAAIL--LSNTSQATLGPEHLMPSSTYVARVRTRLAP 194
Query: 373 GPGP---ESEVVTIFSAEDMPQVAPQGVFSRGF--NSTAINVTWNPIELIRENIRGRLIG 427
G S+ + P Q F + ++ +W +
Sbjct: 195 GSRLSGRPSKWSPEVCWDSQPGDEAQPQNLECFFDGAAVLSCSWEV-----RKEVASSVS 249
Query: 428 HRIKYWKEDNPEETAVYYLSRTTRNWALIVGLQPDTKYYVKVMAYNNAGEG-------PE 480
+ Y + V T+++ ++ + A G P
Sbjct: 250 FGLFYKPSPDAGSA-VLLREEECSPVLREGLGSLHTRHHCQIPVPDPATHGQYIVSVQPR 308
Query: 481 SERYLERTYRKAPQKPPSAVHIKGINPTTVHVTWRYVSPSFEEEPIIGYKVRVWEVDQDM 540
++ PPS K + + + W + +E ++++ +
Sbjct: 309 RAEKHIKSSVNIQMAPPSLQVTK--DGDSYSLRWETMKMRYEH-IDHTFEIQYRKDTATW 365
Query: 541 SRANDTIIPVGNTLDADIVDLSPGKRYHMRVLAFSNGGDGRMS----SPAITFQ 590
+ + N + L P RY RV ++ S A ++
Sbjct: 366 KDSK--TETLQNAHSMALPALEPSTRYWARVRVRTSRTGYNGIWSEWSEARSWD 417
Score = 68.5 bits (166), Expect = 2e-12
Identities = 29/291 (9%), Positives = 64/291 (21%), Gaps = 16/291 (5%)
Query: 303 DLSISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETLKEYGNVGIAVVRIPSE---FYY 359
++ W ++ Q N+ + + + R
Sbjct: 18 HITCRWAD-TQDAQRLVNVTLIRRVNEDLLEPVSCDLSDDMPWSACPHPRCVPRRCVIPC 76
Query: 360 TEYEVKVQAINDVGPGPESEVVTIFSAEDMPQVAPQGVFSRGFNSTAINVTWNP--IELI 417
+ V P + Q + +TW+
Sbjct: 77 QSFVVTDVDYFSFQPDRPLGTRLTVTLTQHVQPPEPRDLQISTDQDHFLLTWSVALGSPQ 136
Query: 418 RENIRGRLIGHRIKYWKEDNPEETAVYYLSRTTRNWALIVGLQPDTKYYVKVMAYNNAGE 477
+ + + Y + + E A LS T++ L P + Y +V G
Sbjct: 137 SHWLSPGDLEFEVVYKRLQDSWEDAAILLSNTSQATLGPEHLMPSSTYVARVRTRLAPGS 196
Query: 478 GPESE-----RYLERTYRKAPQKPPSAVHIKGINPTTVHVTWRYVSPSFEEEPIIGYKVR 532
+ + + P + + +W E + + +
Sbjct: 197 RLSGRPSKWSPEVCWDSQPGDEAQPQNLECFFDGAAVLSCSW---EVRKEVASSVSFGLF 253
Query: 533 VWEVDQDMSRANDTIIPVGNTLDADIVDLSPGKRYHMRVLAFSNGGDGRMS 583
S L S R+H ++ G+
Sbjct: 254 YKPSPDAGSAVLLREEECSPVLREG--LGSLHTRHHCQIPVPDPATHGQYI 302
Score = 48.5 bits (114), Expect = 4e-06
Identities = 28/214 (13%), Positives = 55/214 (25%), Gaps = 19/214 (8%)
Query: 390 PQVAPQGVFSRGFNSTAINVTWNPIELIRENIRGRLIGHRIKYWKEDNPEETAVYYLSRT 449
+ Q + ++ I W + RL+ + ++ E LS
Sbjct: 2 ETIPLQTLRCYNDYTSHITCRWADTQD-----AQRLVNVTLIRRVNEDLLEPVSCDLSDD 56
Query: 450 TRN-------WALIVGLQPDTKYYVKVMAYNNAGEGPESERYLERTYRKAPQ-KPPSAVH 501
+ P + V + Y + L T + Q P +
Sbjct: 57 MPWSACPHPRCVPRRCVIPCQSFVVTDVDYFSFQPDRPLGTRLTVTLTQHVQPPEPRDLQ 116
Query: 502 IKGINPTTVHVTWRYVSPSFEEEPI----IGYKVRVWEVDQDMSRANDTIIPVGNTLDAD 557
I + +TW S + + + ++V + A ++ +
Sbjct: 117 IS-TDQDHFLLTWSVALGSPQSHWLSPGDLEFEVVYKRLQDSWEDA-AILLSNTSQATLG 174
Query: 558 IVDLSPGKRYHMRVLAFSNGGDGRMSSPAITFQM 591
L P Y RV G P+
Sbjct: 175 PEHLMPSSTYVARVRTRLAPGSRLSGRPSKWSPE 208
>2bk8_A Connectin, M1, titin heart isoform N2-B; IG domain, M-BAND,
structural protein, muscle, antibo; 1.69A {Homo
sapiens}
Length = 97
Score = 75.8 bits (187), Expect = 5e-17
Identities = 20/78 (25%), Positives = 31/78 (39%), Gaps = 4/78 (5%)
Query: 4 EGGNVTIFCNPEAAPKPKFV-WKKDGNIIGSGGRRKIFENGN---LLISPVSRDDSGIYS 59
EGG+V C E + V W + + + +I L + +++ D G Y
Sbjct: 15 EGGHVKYVCKIENYDQSTQVTWYFGVRQLENSEKYEITYEDGVAILYVKDITKLDDGTYR 74
Query: 60 CTATNVHGMDESKGRLIV 77
C N +G D S L V
Sbjct: 75 CKVVNDYGEDSSYAELFV 92
Score = 51.9 bits (125), Expect = 1e-08
Identities = 14/69 (20%), Positives = 27/69 (39%), Gaps = 11/69 (15%)
Query: 116 IWTHNGVRIGNMDLNELETPNINI--DGGL--LEITNASFADAGEYECVVKSTVGKISTK 171
W ++ N + I + G+ L + + + D G Y C V + G+ S+
Sbjct: 35 TWYFGVRQLEN-------SEKYEITYEDGVAILYVKDITKLDDGTYRCKVVNDYGEDSSY 87
Query: 172 TTVIVEGPP 180
+ V+G
Sbjct: 88 AELFVKGVR 96
>1x5f_A Neogenin; RGM binding, fibronectin type III domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
b.1.2.1
Length = 120
Score = 76.7 bits (189), Expect = 5e-17
Identities = 22/110 (20%), Positives = 38/110 (34%), Gaps = 10/110 (9%)
Query: 169 STKTTVIVEGPPGLPGGVQVVEVHKTSATIQWTDGATNGR-PITHYKIIARTNWNSTWFN 227
P P V V + W A++ Y + +
Sbjct: 7 GEHAPATTGPLPSAPRDVVASLVSTRFIKLTWRTPASDPHGDNLTYSVFYTKEGIARERV 66
Query: 228 VSEHVIGKEVDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPS 277
+ G+ + +I+N L+P + Y F+V+A N+ G GE S+P
Sbjct: 67 ENTSHPGEM--------QVTIQN-LMPATVYIFRVMAQNKHGSGESSAPL 107
Score = 69.4 bits (170), Expect = 1e-14
Identities = 32/127 (25%), Positives = 46/127 (36%), Gaps = 8/127 (6%)
Query: 373 GPGPESEVVTIFSAEDMPQVAPQGVFSRGFNSTAINVTWNPIELIRENIRGRLIGHRIKY 432
G S + +P AP+ V + ++ I +TW + G + + + Y
Sbjct: 1 GSSGSSGEHAPATTGPLPS-APRDVVASLVSTRFIKLTWRTPA---SDPHGDNLTYSVFY 56
Query: 433 WKEDNPEETAVYYLSRTTRNWALIVGLQPDTKYYVKVMAYNNAGEGPESERYLERTYRKA 492
KE E V S I L P T Y +VMA N G G S T
Sbjct: 57 TKEGIARER-VENTSHPGEMQVTIQNLMPATVYIFRVMAQNKHGSGESSAPLRVET---Q 112
Query: 493 PQKPPSA 499
P+ PS+
Sbjct: 113 PESGPSS 119
Score = 60.9 bits (148), Expect = 1e-11
Identities = 27/120 (22%), Positives = 44/120 (36%), Gaps = 7/120 (5%)
Query: 476 GEGPESERYLERTYRKAPQKPPSAVHIKGINPTTVHVTWRYVSPSFE-EEPIIGYKVRVW 534
G S + T P P V ++ + +TWR +P+ + + Y V
Sbjct: 1 GSSGSSGEHAPATTGPLPS-APRDVVASLVSTRFIKLTWR--TPASDPHGDNLTYSVFYT 57
Query: 535 EVDQDMSRANDTIIPVGNTLDADIVDLSPGKRYHMRVLAFSNGGDGRMSSPAITFQMGEE 594
+ R +T P + I +L P Y RV+A + G G SS + + E
Sbjct: 58 KEGIARERVENTSHP--GEMQVTIQNLMPATVYIFRVMAQNKHGSG-ESSAPLRVETQPE 114
Score = 51.6 bits (124), Expect = 3e-08
Identities = 25/125 (20%), Positives = 42/125 (33%), Gaps = 15/125 (12%)
Query: 271 GEPSSPSPQYNTPADKPYQAPSRIGGGGGKIGDLS-----ISWEPLPREKQNAPNIYYKI 325
SS T P AP + +S ++W P + N+ Y +
Sbjct: 2 SSGSSGEHAPATTGPLP-SAPRDV-----VASLVSTRFIKLTWRT-PASDPHGDNLTYSV 54
Query: 326 FWRKKNDTEFQSETLKEYGNVGIAVVRIPSEFYYTEYEVKVQAINDVGPGPESEVVTIFS 385
F+ K+ + E + G V I + T Y +V A N G G S + + +
Sbjct: 55 FYTKEGIARERVENTS---HPGEMQVTIQNLMPATVYIFRVMAQNKHGSGESSAPLRVET 111
Query: 386 AEDMP 390
+
Sbjct: 112 QPESG 116
>2oz4_A Intercellular adhesion molecule 1; IGSF domain, structural
plasticity, cell-surface dimerizatio adhesion; HET: NAG
FUC; 2.70A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 b.1.1.4
PDB: 1p53_A*
Length = 265
Score = 80.5 bits (198), Expect = 6e-17
Identities = 44/181 (24%), Positives = 62/181 (34%), Gaps = 32/181 (17%)
Query: 4 EGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTAT 63
EG VT+ C EA P+ K +G G R LL+ D+ +SC+AT
Sbjct: 112 EGTEVTVKC--EAHPRAK--VTLNGVPAQPLGPR-----AQLLLKATPEDNGRSFSCSAT 162
Query: 64 N-VHGMDESKGR---LIVLHGPS-YYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWT 118
V G K + L VL+GP P T + C A L
Sbjct: 163 LEVAGQLIHKNQTRELRVLYGPRLDERDCPGNWTWPENSQQTPMCQAWGNPL--PELKCL 220
Query: 119 HNGVRIGNMDLNELETPNINIDGGLLEITNASFADAGEYECVVKSTVGKISTKTTVIVEG 178
+G + E + G Y C +ST G+++ + TV V
Sbjct: 221 KDGTFPLP----------------IGESVTVTRDLEGTYLCRARSTQGEVTREVTVNVLS 264
Query: 179 P 179
P
Sbjct: 265 P 265
Score = 49.7 bits (118), Expect = 9e-07
Identities = 23/201 (11%), Positives = 48/201 (23%), Gaps = 32/201 (15%)
Query: 4 EGGNVTIFCNPEA---APKPKFVWKKDGNIIGSGGRR--KIFENGNLLISPVSRDDSGIY 58
T+ C+ + + + + F + + +
Sbjct: 17 VDTQGTVVCSLDGLFPVSEAQVHLALGDQRLNPTVTYGNDSFSAKASVSVTAEDEGTQRL 76
Query: 59 SCTATNVHGMDESKGRLIVLHGPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWT 118
+C + E+ + + P+ L ++ + ++C AH T
Sbjct: 77 TCAVILGNQSQETLQTVTIYSFPAPNVILTK-PEVSEGTEVTVKCEAHPRA------KVT 129
Query: 119 HNGVRIGNMDLNELETPNINIDGGLLEITNASFADAGEYECVVKSTVGKI----STKTTV 174
NGV L + + + C V + +
Sbjct: 130 LNGVPAQ-----------PLGPRAQLLLKATPEDNGRSFSCSATLEVAGQLIHKNQTREL 178
Query: 175 IVEGPPGL-----PGGVQVVE 190
V P L PG E
Sbjct: 179 RVLYGPRLDERDCPGNWTWPE 199
>2kbg_A N-CAM 2, neural cell adhesion molecule 2; fibronectin type III
module, beta-sheet sandwich, cell membrane,
glycoprotein, immunoglobulin domain; NMR {Homo sapiens}
Length = 114
Score = 76.0 bits (187), Expect = 6e-17
Identities = 22/112 (19%), Positives = 36/112 (32%), Gaps = 12/112 (10%)
Query: 176 VEGPPGLPGGVQVVEVHKTSATIQWTDGATNGRPITHYKIIARTNWNSTWFNVSEHVIGK 235
P P + S + T G PI Y + R+ + + +
Sbjct: 5 SMREPSPPS-IHGQPSSGKSFKLSITKQDDGGAPILEYIVKYRSKDKEDQWLEKK--VQG 61
Query: 236 EVDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPSPQYNTPADKP 287
D +E+ L YE ++ A N LGY EP+ ++ P
Sbjct: 62 NKDHII------LEH-LQWTMGYEVQITAANRLGYSEPTVYE--FSMPPKPN 104
Score = 46.4 bits (110), Expect = 2e-06
Identities = 14/108 (12%), Positives = 38/108 (35%), Gaps = 7/108 (6%)
Query: 394 PQGVFSRGFNSTAINVTWNPIELIRENIRGRLIGHRIKYWKEDNPEETAVYYLSRTTRNW 453
P + + + + ++ +++ ++ + +KY +D ++ + +
Sbjct: 11 PPSIHGQPSSGKSFKLSITK----QDDGGAPILEYIVKYRSKDKEDQWLEKKVQGNK-DH 65
Query: 454 ALIVGLQPDTKYYVKVMAYNNAGEGPESERYLERTYRKAPQKPPSAVH 501
++ LQ Y V++ A N G + E + P H
Sbjct: 66 IILEHLQWTMGYEVQITAANRLGYSEPTV--YEFSMPPKPNIIKDHHH 111
Score = 43.7 bits (103), Expect = 1e-05
Identities = 15/100 (15%), Positives = 35/100 (35%), Gaps = 6/100 (6%)
Query: 491 KAPQKPPSA--VHIKGINPTTVHVTWRYVSPSFEEEPIIGYKVRVWEVDQDMSRANDTII 548
+A + PS +H + + + ++ PI+ Y V+ D++ +
Sbjct: 3 EASMREPSPPSIHGQPSSGKSFKLSIT--KQDDGGAPILEYIVKYRSKDKEDQWLEKKV- 59
Query: 549 PVGNTLDADIVDLSPGKRYHMRVLAFSNGGDGRMSSPAIT 588
GN + L Y +++ A + G + +
Sbjct: 60 -QGNKDHIILEHLQWTMGYEVQITAANRLGYSEPTVYEFS 98
Score = 41.4 bits (97), Expect = 1e-04
Identities = 15/91 (16%), Positives = 32/91 (35%), Gaps = 7/91 (7%)
Query: 304 LSISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETLKEYGNVGIAVVRIPSEFYYTEYE 363
+S ++ AP + Y + +R K+ + E + I + + YE
Sbjct: 24 FKLSITK--QDDGGAPILEYIVKYRSKDKEDQWLEKKVQGNKDHIILEHLQW---TMGYE 78
Query: 364 VKVQAINDVGPGPESEVVTIFSAEDMPQVAP 394
V++ A N +G + + P +
Sbjct: 79 VQITAANRLGYSEPTVYEFSMPPK--PNIIK 107
>1x4x_A Fibronectin type-III domain containing protein 3A; FN3,
immunoglobulin-like beta- sandwich fold, KIAA0970,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
b.1.2.1
Length = 106
Score = 75.4 bits (186), Expect = 7e-17
Identities = 24/112 (21%), Positives = 35/112 (31%), Gaps = 15/112 (13%)
Query: 177 EGPPGLPGGVQVVEVHKTSATIQWTDGATNGRPITHYKIIARTNWNSTWFNVSEHVIGKE 236
P QV T A + W +NG +T Y++ +
Sbjct: 5 SSGPDQCKPPQVTCRSATCAQVNWEVPLSNGTDVTEYRLEWGGV-EGSMQIC-------- 55
Query: 237 VDRYTGRK-EASIENVLVPWSTYEFKVIAGNELGYGEPSSPSPQYNTPADKP 287
Y G I+ L P +TY +V A + +G G S TP
Sbjct: 56 ---YCGPGLSYEIKG-LSPATTYYCRVQALSVVGAGPFSEVV-ACVTPPSSG 102
Score = 54.6 bits (132), Expect = 1e-09
Identities = 23/96 (23%), Positives = 32/96 (33%), Gaps = 11/96 (11%)
Query: 404 STAINVTWNPIELIRENIRGRLIGHRIKYWKEDNPEETAVYYLSRTTRNWALIVGLQPDT 463
+T V W + + +R+ W Y + I GL P T
Sbjct: 21 ATCAQVNWEV----PLSNGTDVTEYRL-EWGGVEGSMQICYCGPGLS---YEIKGLSPAT 72
Query: 464 KYYVKVMAYNNAGEGPESERYLERTYRKAPQKPPSA 499
YY +V A + G GP SE P PS+
Sbjct: 73 TYYCRVQALSVVGAGPFSE---VVACVTPPSSGPSS 105
Score = 53.1 bits (128), Expect = 6e-09
Identities = 22/90 (24%), Positives = 30/90 (33%), Gaps = 7/90 (7%)
Query: 496 PPSAVHIKGINPTTVHVTWRYVSPSFEEEPIIGYKVRVWEVDQDMSRANDTIIPVGNTLD 555
+ + T V W P + Y++ V+ M I G L
Sbjct: 10 QCKPPQVTCRSATCAQVNWE--VPLSNGTDVTEYRLEWGGVEGSM-----QICYCGPGLS 62
Query: 556 ADIVDLSPGKRYHMRVLAFSNGGDGRMSSP 585
+I LSP Y+ RV A S G G S
Sbjct: 63 YEIKGLSPATTYYCRVQALSVVGAGPFSEV 92
Score = 42.3 bits (100), Expect = 3e-05
Identities = 21/94 (22%), Positives = 30/94 (31%), Gaps = 22/94 (23%)
Query: 304 LSISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETLKEYGNVGIAVVRIPSEFY----- 358
++WE P Y++ W + Q P Y
Sbjct: 24 AQVNWEV-PLS-NGTDVTEYRLEW-GGVEGSMQI------------CYCGPGLSYEIKGL 68
Query: 359 --YTEYEVKVQAINDVGPGPESEVVTIFSAEDMP 390
T Y +VQA++ VG GP SEVV +
Sbjct: 69 SPATTYYCRVQALSVVGAGPFSEVVACVTPPSSG 102
>2cqv_A MLCK, myosin light chain kinase, smooth muscle and non- muscle
isozymes; IG fold, structural genomics, NPPSFA; NMR
{Homo sapiens} SCOP: b.1.1.4
Length = 114
Score = 75.8 bits (187), Expect = 8e-17
Identities = 17/82 (20%), Positives = 28/82 (34%), Gaps = 3/82 (3%)
Query: 4 EGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGN---LLISPVSRDDSGIYSC 60
G +V +F W K I K+ + N L I ++ G Y+
Sbjct: 21 AGESVELFGKVTGTQPITCTWMKFRKQIQESEHMKVENSENGSKLTILAARQEHCGCYTL 80
Query: 61 TATNVHGMDESKGRLIVLHGPS 82
N G +++ L V+ P
Sbjct: 81 LVENKLGSRQAQVNLTVVDKPD 102
Score = 55.8 bits (135), Expect = 8e-10
Identities = 19/104 (18%), Positives = 37/104 (35%), Gaps = 13/104 (12%)
Query: 86 QLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINI----DG 141
Q P + A +++L + + W +I E+ ++ + +G
Sbjct: 12 QFPEDQKVRAGESVELFGKVTGTQPITC--TWMKFRKQI-------QESEHMKVENSENG 62
Query: 142 GLLEITNASFADAGEYECVVKSTVGKISTKTTVIVEGPPGLPGG 185
L I A G Y +V++ +G + + V P P G
Sbjct: 63 SKLTILAARQEHCGCYTLLVENKLGSRQAQVNLTVVDKPDPPAG 106
>1z7z_I Intercellular adhesion molecule-1; ICAM-1,kilifi,CD54,human
coxsackievirus A21, cryo-electron
microscopy,virus-receptor complex, icosahedral virus;
HET: NAG NDG; 8.00A {Homo sapiens} SCOP: b.1.1.3 b.1.1.3
b.1.1.4 b.1.1.4 b.1.1.4
Length = 450
Score = 81.8 bits (201), Expect = 1e-16
Identities = 35/181 (19%), Positives = 51/181 (28%), Gaps = 32/181 (17%)
Query: 4 EGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTAT 63
EG VT+ C K + LL+ D+ +SC+AT
Sbjct: 297 EGTEVTVKCEAHPRAKVTLNGVPAQ---------PLGPRAQLLLKATPEDNGRSFSCSAT 347
Query: 64 NVHG----MDESKGRLIVLHGPSYYE-QLPPKITIAAHRNLQLRCSAHTEELLDVAYIWT 118
L VL+GP E P T + C A
Sbjct: 348 LEVAGQLIHKNQTRELRVLYGPRLDERDCPGNWTWPENSQQTPMCQAWGN--PLPELKCL 405
Query: 119 HNGVRIGNMDLNELETPNINIDGGLLEITNASFADAGEYECVVKSTVGKISTKTTVIVEG 178
+G + E + G Y C +ST G+++ + TV V
Sbjct: 406 KDG----------------TFPLPIGESVTVTRDLEGTYLCRARSTQGEVTREVTVNVLS 449
Query: 179 P 179
P
Sbjct: 450 P 450
Score = 65.3 bits (158), Expect = 2e-11
Identities = 19/80 (23%), Positives = 24/80 (30%), Gaps = 11/80 (13%)
Query: 2 AGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCT 61
E T C P P+ KDG G V+RD G Y C
Sbjct: 382 WPENSQQTPMCQAWGNPLPELKCLKDGTFPLPIGE----------SVTVTRDLEGTYLCR 431
Query: 62 ATNVHGMDESKGRLIVLHGP 81
A + G + + V P
Sbjct: 432 ARSTQGEVTREVTVNV-LSP 450
Score = 64.9 bits (157), Expect = 3e-11
Identities = 37/303 (12%), Positives = 67/303 (22%), Gaps = 26/303 (8%)
Query: 4 EGGNVTIFCNPEAAPKPKFVWKK---DGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSC 60
GG+V + C+ + ++ G RK++E + + C
Sbjct: 13 RGGSVLVTCSTSCDQPMLLGIETPLPKKELLLPGNNRKVYE-------LSNVQEDSQPMC 65
Query: 61 TATNVHGMDESKGRLIVLHGPSYYEQLPPKITIAAHRNLQLRCSAHTEE-LLDVAYIWTH 119
+ G +K L V P E P +NL LRC ++ +
Sbjct: 66 YSNCPDGQSTAKTFLTVYWTPERVELAPLPSWQPVGKNLTLRCQVEGGAPRANLTVVLLR 125
Query: 120 NGVRIGNMDLNELETPNINIDGGLLEITNASFADAGEYECVVKSTVGKISTKTTVIVEGP 179
+ E + + C + + + P
Sbjct: 126 GEKELKR------EPAVGEPAEVTTTVLVRRDHHGANFSCRTELDLRPQGLELFENTSAP 179
Query: 180 PGLPGGVQVVEVHKTSATIQWTDGATNGRPITHYKIIARTNWNS--TWFNVSEHVIGKEV 237
+Q + T + T + S
Sbjct: 180 Y----QLQTFVLPATPPQLVSPRVLEVDTQGTVVCSLDGLFPVSEAQVHLALGDQRLNPT 235
Query: 238 DRYTGRK---EASIENVLVPWSTYEFKVIAGNELGYGEPSSPSPQYNTPADKPYQAPSRI 294
Y +AS+ T E Y+ PA +
Sbjct: 236 VTYGNDSFSAKASVSVTAEDEGTQRLTCAVILGNQSQETLQTVTIYSFPAPNVILTKPEV 295
Query: 295 GGG 297
G
Sbjct: 296 SEG 298
Score = 63.0 bits (152), Expect = 1e-10
Identities = 27/233 (11%), Positives = 48/233 (20%), Gaps = 29/233 (12%)
Query: 4 EGGNVTIFCNPEA---APKPKFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSC 60
G N+T+ C E V + + + +SC
Sbjct: 100 VGKNLTLRCQVEGGAPRANLTVVLLRGEKELKREPAVGEPAEVTTTVLVRRDHHGANFSC 159
Query: 61 TATNVHGMDESKG--------RLIVLHGPSYYEQLPPKITIAAHRNLQLRCSAHTEELLD 112
+ +L P+ QL + + CS +
Sbjct: 160 RTELDLRPQGLELFENTSAPYQLQTFVLPATPPQLVSPRVLEVDTQGTVVCSLDGLFPVS 219
Query: 113 VAYI-WTHNGVRIGNMDLNELETPNINIDGGLLEITNASFADAGEYECVVKSTVGKISTK 171
A + R+ ++ + A C V T
Sbjct: 220 EAQVHLALGDQRLNPTVTYGNDSFSAKA----SVSVTAEDEGTQRLTCAVILGNQSQETL 275
Query: 172 TTVIVEGPPGLPGGVQVVEVH-------------KTSATIQWTDGATNGRPIT 211
TV + P + EV + T+ G
Sbjct: 276 QTVTIYSFPAPNVILTKPEVSEGTEVTVKCEAHPRAKVTLNGVPAQPLGPRAQ 328
>1gl4_B Basement membrane-specific heparan sulfate proteoglycan core
protein; immunoglobulin-like domain, extracellular
matrix; HET: EPE; 2.0A {Mus musculus} SCOP: b.1.1.4
Length = 98
Score = 74.5 bits (183), Expect = 1e-16
Identities = 25/75 (33%), Positives = 35/75 (46%), Gaps = 3/75 (4%)
Query: 4 EGGNVTIFCNPEA-APKPKFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTA 62
G +VT C ++ +P VW + N G R + NG L I V D+G Y CT
Sbjct: 24 PGADVTFICTAKSKSPAYTLVWTRLHN--GKLPSRAMDFNGILTIRNVQPSDAGTYVCTG 81
Query: 63 TNVHGMDESKGRLIV 77
+N+ MD+ L V
Sbjct: 82 SNMFAMDQGTATLHV 96
Score = 51.0 bits (122), Expect = 3e-08
Identities = 16/90 (17%), Positives = 29/90 (32%), Gaps = 9/90 (10%)
Query: 88 PPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEIT 147
++ ++ C+A ++ +WT N G+L I
Sbjct: 17 QRSQSVRPGADVTFICTAKSKSPA-YTLVWTRLH--------NGKLPSRAMDFNGILTIR 67
Query: 148 NASFADAGEYECVVKSTVGKISTKTTVIVE 177
N +DAG Y C + T+ V+
Sbjct: 68 NVQPSDAGTYVCTGSNMFAMDQGTATLHVQ 97
>1bpv_A Titin, A71, connectin; fibronectin type III; NMR {Homo sapiens}
SCOP: b.1.2.1
Length = 112
Score = 74.7 bits (184), Expect = 2e-16
Identities = 28/101 (27%), Positives = 41/101 (40%), Gaps = 11/101 (10%)
Query: 179 PPGLPGGVQVVEVHKTSATIQWTD-GATNGRPITHYKIIARTNWNSTWFNVSEHVIGKEV 237
P PG + + + + T++W T G IT Y + R N W + I +
Sbjct: 10 PIDPPGKPVPLNITRHTVTLKWAKPEYTGGFKITSYIVEKRDLPNGRWLKANFSNILEN- 68
Query: 238 DRYTGRKEASIENVLVPWSTYEFKVIAGNELG-YGEPSSPS 277
+T + L + YEF+VIA N G PS PS
Sbjct: 69 -EFT------VSG-LTEDAAYEFRVIAKNAAGAISPPSEPS 101
Score = 44.6 bits (106), Expect = 6e-06
Identities = 23/108 (21%), Positives = 38/108 (35%), Gaps = 8/108 (7%)
Query: 492 APQKPPSAVHIKGINPTTVHVTWRYVSPSFE-EEPIIGYKVRVWEVDQDM-SRANDTIIP 549
+P PP I TV + W P + I Y V ++ +AN + I
Sbjct: 9 SPIDPPGKPVPLNITRHTVTLKWA--KPEYTGGFKITSYIVEKRDLPNGRWLKANFSNIL 66
Query: 550 VGNTLDADIVDLSPGKRYHMRVLAF-SNGGDGRMSSPAITFQMGEEKE 596
+ + L+ Y RV+A + G S P+ ++ E
Sbjct: 67 ---ENEFTVSGLTEDAAYEFRVIAKNAAGAISPPSEPSDAITCRDDVE 111
Score = 34.2 bits (79), Expect = 0.029
Identities = 14/91 (15%), Positives = 24/91 (26%), Gaps = 22/91 (24%)
Query: 304 LSISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETLKEYGNVGIAVVRIPSEFY----- 358
+++ W P Y + R + + I +
Sbjct: 27 VTLKWAK-PEYTGGFKITSYIVEKRDLPNGRWLK----------ANFSNILENEFTVSGL 75
Query: 359 --YTEYEVKVQAINDVG----PGPESEVVTI 383
YE +V A N G P S+ +T
Sbjct: 76 TEDAAYEFRVIAKNAAGAISPPSEPSDAITC 106
Score = 32.3 bits (74), Expect = 0.11
Identities = 15/88 (17%), Positives = 26/88 (29%), Gaps = 8/88 (9%)
Query: 393 APQGVFSRGFNSTAINVTWNPIELIRENIRG-RLIGHRIKYWKEDNPE-ETAVYYLSRTT 450
P + + W E G ++ + ++ N A +
Sbjct: 13 PPGKPVPLNITRHTVTLKWAK----PEYTGGFKITSYIVEKRDLPNGRWLKANFSNILEN 68
Query: 451 RNWALIVGLQPDTKYYVKVMAYNNAGEG 478
+ GL D Y +V+A N AG
Sbjct: 69 E--FTVSGLTEDAAYEFRVIAKNAAGAI 94
>2yuw_A Myosin binding protein C, SLOW type; fibronectin III domain, SLOW-
type protein, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 110
Score = 74.7 bits (184), Expect = 2e-16
Identities = 21/102 (20%), Positives = 34/102 (33%), Gaps = 10/102 (9%)
Query: 177 EGPPGLPGGVQVVEVHKTSATIQWTDGATNGR-PITHYKIIARTNWNSTWFNVSEHVIGK 235
P + V V T+ T++W G + Y + W ++ +I K
Sbjct: 5 SSGTSPPTLLTVDSVTDTTVTMRWRPPDHIGAAGLDGYVLEYCFEGTEDWIVANKDLIDK 64
Query: 236 EVDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPS 277
++T I L + +V A N G EP S
Sbjct: 65 T--KFT------ITG-LPTDAKIFVRVKAVNAAGASEPKYYS 97
Score = 47.0 bits (112), Expect = 8e-07
Identities = 19/96 (19%), Positives = 32/96 (33%), Gaps = 7/96 (7%)
Query: 492 APQKPPSAVHIKGINPTTVHVTWRYVSPSFE-EEPIIGYKVRVWEVDQDM-SRANDTIIP 549
+ PP+ + + + TTV + WR P + GY + + AN +I
Sbjct: 6 SGTSPPTLLTVDSVTDTTVTMRWR--PPDHIGAAGLDGYVLEYCFEGTEDWIVANKDLID 63
Query: 550 VGNTLDADIVDLSPGKRYHMRVLAFSNGGDGRMSSP 585
I L + +RV A + G
Sbjct: 64 ---KTKFTITGLPTDAKIFVRVKAVNAAGASEPKYY 96
Score = 43.1 bits (102), Expect = 2e-05
Identities = 25/116 (21%), Positives = 38/116 (32%), Gaps = 8/116 (6%)
Query: 385 SAEDMPQVAPQGVFSRGFNSTAINVTWNPIELIRENIRGRLIGHRIKYWKEDNPE-ETAV 443
S+ P + T + + W P + L G+ ++Y E + A
Sbjct: 2 SSGSSGTSPPTLLTVDSVTDTTVTMRWRPPD---HIGAAGLDGYVLEYCFEGTEDWIVAN 58
Query: 444 YYLSRTTRNWALIVGLQPDTKYYVKVMAYNNAGEGPESERYLERTYRKAPQKPPSA 499
L T+ I GL D K +V+V A N AG + P S
Sbjct: 59 KDLIDKTK--FTITGLPTDAKIFVRVKAVNAAGASEPKY--YSQPILVKESGPSSG 110
Score = 33.9 bits (78), Expect = 0.030
Identities = 12/90 (13%), Positives = 28/90 (31%), Gaps = 21/90 (23%)
Query: 304 LSISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETLKEYGNVGIAVVRIPSEFY----- 358
+++ W P P A Y + + + ++ I +
Sbjct: 24 VTMRWRP-PDHIGAAGLDGYVLEYCFEGTEDWIV----------ANKDLIDKTKFTITGL 72
Query: 359 --YTEYEVKVQAINDVGPGP---ESEVVTI 383
+ V+V+A+N G S+ + +
Sbjct: 73 PTDAKIFVRVKAVNAAGASEPKYYSQPILV 102
>2ed7_A Netrin receptor DCC; tumor suppressor protein DCC, colorectal
cancer suppressor, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 119
Score = 74.8 bits (184), Expect = 2e-16
Identities = 29/127 (22%), Positives = 52/127 (40%), Gaps = 9/127 (7%)
Query: 373 GPGPESEVVTIFSAEDMPQVAPQGVFSRGFNSTAINVTWNPIELIRENIRGRLIGHRIKY 432
G S I S+ +P AP+ V +S + ++W P +G + + +
Sbjct: 1 GSSGSSGKPAIPSSSVLPS-APRDVVPVLVSSRFVRLSWRP----PAEAKGNIQTFTVFF 55
Query: 433 WKEDNPEETAVYYLSRTTRNWALIVGLQPDTKYYVKVMAYNNAGEGPESERYLERTYRKA 492
+E + E A+ + + L+P+ Y +V+AYN G G S+ T
Sbjct: 56 SREGDNRERALNTTQPGSLQ-LTVGNLKPEAMYTFRVVAYNEWGPGESSQPIKVAT---Q 111
Query: 493 PQKPPSA 499
P+ PS+
Sbjct: 112 PESGPSS 118
Score = 74.4 bits (183), Expect = 2e-16
Identities = 25/119 (21%), Positives = 38/119 (31%), Gaps = 9/119 (7%)
Query: 169 STKTTVIVEGPPGLPGGVQVVEVHKTSATIQWTDGATNGRPITHYKIIARTNWNSTWFNV 228
P P V V V + W A I + + ++ +
Sbjct: 7 GKPAIPSSSVLPSAPRDVVPVLVSSRFVRLSWRPPAEAKGNIQTFTVFFSREGDNRERAL 66
Query: 229 SEHVIGKEVDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPSPQYNTPADKP 287
+ G + ++ N L P + Y F+V+A NE G GE S P P P
Sbjct: 67 NTTQPGSL--------QLTVGN-LKPEAMYTFRVVAYNEWGPGESSQPIKVATQPESGP 116
Score = 62.8 bits (153), Expect = 3e-12
Identities = 26/110 (23%), Positives = 43/110 (39%), Gaps = 5/110 (4%)
Query: 476 GEGPESERYLERTYRKAPQKPPSAVHIKGINPTTVHVTWRYVSPSFEEEPIIGYKVRVWE 535
G S + + P P V ++ V ++WR P+ + I + V
Sbjct: 1 GSSGSSGKPAIPSSSVLPS-APRDVVPVLVSSRFVRLSWR--PPAEAKGNIQTFTVFFSR 57
Query: 536 VDQDMSRANDTIIPVGNTLDADIVDLSPGKRYHMRVLAFSNGGDGRMSSP 585
+ RA +T P +L + +L P Y RV+A++ G G S P
Sbjct: 58 EGDNRERALNTTQP--GSLQLTVGNLKPEAMYTFRVVAYNEWGPGESSQP 105
Score = 49.0 bits (117), Expect = 2e-07
Identities = 21/127 (16%), Positives = 44/127 (34%), Gaps = 17/127 (13%)
Query: 269 GYGEPSSPSPQYNTPADKPYQAPSRIGGGGGKIGDLS-----ISWEPLPREKQNAPNIYY 323
G S P + + P AP + +S +SW P + +
Sbjct: 1 GSSGSSGK-PAIPSSSVLP-SAPRDV-----VPVLVSSRFVRLSWRP--PAEAKGNIQTF 51
Query: 324 KIFWRKKNDTEFQSETLKEYGNVGIAVVRIPSEFYYTEYEVKVQAINDVGPGPESEVVTI 383
+F+ ++ D ++ G + + + Y +V A N+ GPG S+ + +
Sbjct: 52 TVFFSREGDNRERALNTT---QPGSLQLTVGNLKPEAMYTFRVVAYNEWGPGESSQPIKV 108
Query: 384 FSAEDMP 390
+ +
Sbjct: 109 ATQPESG 115
>2yrz_A Integrin beta-4; GP150, CD104 antigen, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 118
Score = 74.8 bits (184), Expect = 2e-16
Identities = 23/127 (18%), Positives = 41/127 (32%), Gaps = 9/127 (7%)
Query: 373 GPGPESEVVTIFSAEDMPQVAPQGVFSRGFNSTAINVTWNPIELIRENIRGRLIGHRIKY 432
G S +P P + T++ V+W L G+ ++Y
Sbjct: 1 GSSGSSGSHDSRLTAGVPD-TPTRLVFSALGPTSLRVSWQEPR---CE--RPLQGYSVEY 54
Query: 433 WKEDNPEETAVYYLSRTTRNWALIVGLQPDTKYYVKVMAYNNAGEGPESERYLERTYRKA 492
+ E + + + ++ L P+ Y +V A + G G E E + T
Sbjct: 55 QLLNGGELHRLN-IPNPAQTSVVVEDLLPNHSYVFRVRAQSQEGWGREREGVI--TIESQ 111
Query: 493 PQKPPSA 499
P S
Sbjct: 112 VSGPSSG 118
Score = 71.3 bits (175), Expect = 3e-15
Identities = 31/116 (26%), Positives = 46/116 (39%), Gaps = 8/116 (6%)
Query: 476 GEGPESERYLERTYRKAPQKPPSAVHIKGINPTTVHVTWRYVSPSFEEEPIIGYKVRVWE 535
G S + R P P+ + + PT++ V+W+ E P+ GY V
Sbjct: 1 GSSGSSGSHDSRLTAGVP-DTPTRLVFSALGPTSLRVSWQ---EPRCERPLQGYSVEYQL 56
Query: 536 VD-QDMSRANDTIIPVGNTLDADIVDLSPGKRYHMRVLAFSNGGDGRMSSPAITFQ 590
++ ++ R N IP + DL P Y RV A S G GR IT +
Sbjct: 57 LNGGELHRLN---IPNPAQTSVVVEDLLPNHSYVFRVRAQSQEGWGREREGVITIE 109
Score = 70.1 bits (172), Expect = 7e-15
Identities = 18/122 (14%), Positives = 40/122 (32%), Gaps = 10/122 (8%)
Query: 169 STKTTVIVEGPPGLPGGVQVVEVHKTSATIQWTDGATNGRPITHYKIIARTNWNSTWFNV 228
+ + + G P P + + TS + W + P+ Y + + +
Sbjct: 7 GSHDSRLTAGVPDTPTRLVFSALGPTSLRVSWQEPRCER-PLQGYSVEYQLLNGGELHRL 65
Query: 229 SEHVIGKEVDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPSPQYNTPADKPY 288
+ + +E+ L+P +Y F+V A ++ G+G + P
Sbjct: 66 NIPNPAQT--SVV------VED-LLPNHSYVFRVRAQSQEGWGREREGVITIESQVSGPS 116
Query: 289 QA 290
Sbjct: 117 SG 118
Score = 48.2 bits (115), Expect = 4e-07
Identities = 26/137 (18%), Positives = 40/137 (29%), Gaps = 35/137 (25%)
Query: 273 PSSPSPQYNTPADKPYQAPSRIGGGGGKIGDLS-----ISWEPLPREKQNAPNIYYKIFW 327
SS S A P P+R+ L +SW+ P + P Y + +
Sbjct: 4 GSSGSHDSRLTAGVP-DTPTRL-----VFSALGPTSLRVSWQE-P--RCERPLQGYSVEY 54
Query: 328 RKKNDTEFQSETLKEYGNVGIAVVRIPSEFYYT--------EYEVKVQAINDVGPGPESE 379
+ N E + P++ Y +V+A + G G E E
Sbjct: 55 QLLNGGELHRLN-----------IPNPAQTSVVVEDLLPNHSYVFRVRAQSQEGWGRERE 103
Query: 380 VVTIFSAEDMPQVAPQG 396
V E G
Sbjct: 104 GVIT--IESQVSGPSSG 118
>2v9t_A Roundabout homolog 1; structural protein-receptor complex,
developmental protein, domain, roundabout, chemotaxis,
LRR domain; 1.70A {Homo sapiens}
Length = 117
Score = 74.5 bits (183), Expect = 3e-16
Identities = 24/94 (25%), Positives = 33/94 (35%), Gaps = 11/94 (11%)
Query: 4 EGGNVTIFCNPEAAPKPKFVWKKDGNII-----GSGGRRKIFENGNLLI-----SPVSRD 53
+G T+ C E P P W K G + R + +G+L SR
Sbjct: 23 KGEPATLNCKAEGRPTPTIEWYKGGERVETDKDDPRSHRMLLPSGSLFFLRIVHGRKSRP 82
Query: 54 DSGIYSCTATNVHGMDESKG-RLIVLHGPSYYEQ 86
D G+Y C A N G S L V ++
Sbjct: 83 DEGVYVCVARNYLGEAVSHDASLEVAAAAHHHHH 116
Score = 44.8 bits (106), Expect = 5e-06
Identities = 21/113 (18%), Positives = 34/113 (30%), Gaps = 24/113 (21%)
Query: 85 EQLPPKIT-------IAAHRNLQLRCSAH-----TEELLDVAYIWTHNGVRIGNMDLNEL 132
E PP+I ++ L C A T W G R+ +
Sbjct: 6 EDFPPRIVEHPSDLIVSKGEPATLNCKAEGRPTPT-------IEWYKGGERVETDKDDPR 58
Query: 133 ETPNINIDGGLL----EITNASFADAGEYECVVKSTVGKISTKT-TVIVEGPP 180
+ G L S D G Y CV ++ +G+ + ++ V
Sbjct: 59 SHRMLLPSGSLFFLRIVHGRKSRPDEGVYVCVARNYLGEAVSHDASLEVAAAA 111
>1x5x_A Fibronectin type-III domain containing protein 3A; structural
genomics, KIAA0970, NPPSFA; NMR {Homo sapiens} SCOP:
b.1.2.1
Length = 109
Score = 73.9 bits (182), Expect = 3e-16
Identities = 24/114 (21%), Positives = 39/114 (34%), Gaps = 12/114 (10%)
Query: 176 VEGPPGLPGGVQVVEVHKTSATIQWTDGA-TNGRPITHYKIIARTNWNSTWFNVSEHVIG 234
P +P + + T ++QW+ + T Y + + F
Sbjct: 4 GSSGPSMPASPVLTKAGITWLSLQWSKPSGTPSDEGISYILEMEEETSGYGFKPKYDGED 63
Query: 235 KEVDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPSPQYNTPADKPY 288
YT ++N L + Y+FKVIA N G PS ++ T D
Sbjct: 64 L---AYT------VKN-LRRSTKYKFKVIAYNSEGKSNPSEVV-EFTTCPDSGP 106
Score = 44.6 bits (106), Expect = 6e-06
Identities = 21/107 (19%), Positives = 36/107 (33%), Gaps = 10/107 (9%)
Query: 393 APQGVFSRGFNSTAINVTWNPIELIRENIRG-RLIGHRIKYWKEDNPEETAVYYLSRTTR 451
P T +++ W+ I + ++ +E + Y
Sbjct: 10 MPASPVLTKAGITWLSLQWSK----PSGTPSDEGISYILEMEEETSGYGFKPKYDGEDLA 65
Query: 452 NWALIVGLQPDTKYYVKVMAYNNAGEGPESERYLERTYRKAPQKPPS 498
+ L+ TKY KV+AYN+ G+ SE + P PS
Sbjct: 66 --YTVKNLRRSTKYKFKVIAYNSEGKSNPSE---VVEFTTCPDSGPS 107
Score = 43.1 bits (102), Expect = 2e-05
Identities = 20/110 (18%), Positives = 42/110 (38%), Gaps = 7/110 (6%)
Query: 492 APQKPPSAVHIKGINPTTVHVTWRYVSPSFE-EEPIIGYKVRVWEVDQDMSRANDTIIPV 550
+ P++ + T + + W PS + I Y + E++++ S
Sbjct: 6 SGPSMPASPVLTKAGITWLSLQWS--KPSGTPSDEGISYIL---EMEEETSGYGFKPKYD 60
Query: 551 GNTLDADIVDLSPGKRYHMRVLAFSNGGDGRMSSPAITFQMGEEKEFKSG 600
G L + +L +Y +V+A+++ G S + F + SG
Sbjct: 61 GEDLAYTVKNLRRSTKYKFKVIAYNSEGKSN-PSEVVEFTTCPDSGPSSG 109
Score = 38.5 bits (90), Expect = 7e-04
Identities = 19/94 (20%), Positives = 27/94 (28%), Gaps = 19/94 (20%)
Query: 304 LSISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETLKEYGNVGIAVVRIPSEFY----- 358
LS+ W P + I Y + ++ Y
Sbjct: 24 LSLQWSK-PSGTPSDEGISYILEMEEETSGYGFKP-----------KYDGEDLAYTVKNL 71
Query: 359 --YTEYEVKVQAINDVGPGPESEVVTIFSAEDMP 390
T+Y+ KV A N G SEVV + D
Sbjct: 72 RRSTKYKFKVIAYNSEGKSNPSEVVEFTTCPDSG 105
>3irg_A Titin; IG-like, titin, OBSL1, complex, alternative splicing,
ATP-binding, calcium, calmodulin-binding,
cardiomyopathy; 1.30A {Homo sapiens} PDB: 3knb_A 3q5o_A
2wp3_T* 2wwk_T 2wwm_D 2y9r_T*
Length = 100
Score = 73.5 bits (181), Expect = 3e-16
Identities = 21/79 (26%), Positives = 33/79 (41%), Gaps = 5/79 (6%)
Query: 4 EGGNVTIFCNPEAAPKPKFVWKKDGNII--GSGGRRKIFENGN---LLISPVSRDDSGIY 58
EG +T+ C P P+ W G I GR I + L+I V + D G+Y
Sbjct: 19 EGKVLTVACAFTGEPTPEVTWSCGGRKIHSQEQGRFHIENTDDLTTLIIMDVQKQDGGLY 78
Query: 59 SCTATNVHGMDESKGRLIV 77
+ + N G D + + +
Sbjct: 79 TLSLGNEFGSDSATVNIHI 97
Score = 53.1 bits (128), Expect = 4e-09
Identities = 23/108 (21%), Positives = 38/108 (35%), Gaps = 18/108 (16%)
Query: 80 GPSYYEQLPPKI-------TIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNEL 132
GP +PPKI +I + L + C+ E +V W+ G +I + +
Sbjct: 1 GPG----IPPKIEALPSDISIDEGKVLTVACAFTGEPTPEV--TWSCGGRKIHSQEQGRF 54
Query: 133 ETPNINIDGGL--LEITNASFADAGEYECVVKSTVGKISTKTTVIVEG 178
I L L I + D G Y + + G S + +
Sbjct: 55 H---IENTDDLTTLIIMDVQKQDGGLYTLSLGNEFGSDSATVNIHIRS 99
>3caf_A Fibroblast growth factor receptor 2; FGFR2, D2, ATP-binding,
disease MU ectodermal dysplasia, glycoprotein,
heparin-binding, immuno domain, kinase; 1.96A {Homo
sapiens} PDB: 3cu1_A* 3euu_A 3dar_A 1wvz_A
Length = 100
Score = 73.2 bits (180), Expect = 4e-16
Identities = 18/79 (22%), Positives = 28/79 (35%), Gaps = 4/79 (5%)
Query: 4 EGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFE----NGNLLISPVSRDDSGIYS 59
V C P P W K+G R ++ + +L++ V D G Y+
Sbjct: 22 AANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYT 81
Query: 60 CTATNVHGMDESKGRLIVL 78
C N +G L V+
Sbjct: 82 CVVENEYGSINHTYHLDVV 100
Score = 49.4 bits (118), Expect = 1e-07
Identities = 18/94 (19%), Positives = 30/94 (31%), Gaps = 14/94 (14%)
Query: 88 PPKITIAAHRNLQLRCSAH-----TEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGG 142
+ A ++ RC A T W NG + +
Sbjct: 15 KRLHAVPAANTVKFRCPAGGNPMPT-------MRWLKNGKEFKQEH--RIGGYKVRNQHW 65
Query: 143 LLEITNASFADAGEYECVVKSTVGKISTKTTVIV 176
L + + +D G Y CVV++ G I+ + V
Sbjct: 66 SLIMESVVPSDKGNYTCVVENEYGSINHTYHLDV 99
>2e7h_A Ephrin type-B receptor 4; FN3 domain, tyrosine- protein kinase
receptor HTK, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 109
Score = 73.3 bits (180), Expect = 5e-16
Identities = 25/115 (21%), Positives = 51/115 (44%), Gaps = 9/115 (7%)
Query: 385 SAEDMPQVAPQGVFSRGFNSTAINVTWNPIELIRENIRGRLIGHRIKYWKEDNPEETAVY 444
S P A + + +++++ W G ++ + +KY ++ ++V
Sbjct: 3 SGSSGPP-AVSDIRVTRSSPSSLSLAWAVPR----APSGAVLDYEVKYHEKGAEGPSSVR 57
Query: 445 YLSRTTRNWALIVGLQPDTKYYVKVMAYNNAGEGPESERYLERTYRKAPQKPPSA 499
+L +T+ N A + GL+ Y V+V A + AG GP + + +T PS+
Sbjct: 58 FL-KTSENRAELRGLKRGASYLVQVRARSEAGYGPFGQEHHSQT---QLDSGPSS 108
Score = 60.6 bits (147), Expect = 2e-11
Identities = 18/95 (18%), Positives = 36/95 (37%), Gaps = 5/95 (5%)
Query: 496 PPSAVHIKGINPTTVHVTWRYVSPSFEEEPIIGYKVRVWEVDQDMSRANDTIIPVGNTLD 555
S + + +P+++ + W P ++ Y+V+ E + + + N
Sbjct: 10 AVSDIRVTRSSPSSLSLAWA--VPRAPSGAVLDYEVKYHEKGAEGPSSVRFLKTSENR-- 65
Query: 556 ADIVDLSPGKRYHMRVLAFSNGGDGRMSSPAITFQ 590
A++ L G Y ++V A S G G Q
Sbjct: 66 AELRGLKRGASYLVQVRARSEAGYGPFGQE-HHSQ 99
Score = 57.1 bits (138), Expect = 3e-10
Identities = 17/109 (15%), Positives = 31/109 (28%), Gaps = 10/109 (9%)
Query: 177 EGPPGLPGGVQVVEVHKTSATIQWTDGATNGRPITHYKIIARTNWNSTWFNVSEHVIGKE 236
P ++V +S ++ W + Y++ +
Sbjct: 5 SSGPPAVSDIRVTRSSPSSLSLAWAVPRAPSGAVLDYEV--------KYHEKGAEGPSSV 56
Query: 237 VDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPSPQYNTPAD 285
T A + L ++Y +V A +E GYG T D
Sbjct: 57 RFLKTSENRAELRG-LKRGASYLVQVRARSEAGYGPFGQEH-HSQTQLD 103
Score = 47.8 bits (114), Expect = 4e-07
Identities = 19/109 (17%), Positives = 37/109 (33%), Gaps = 6/109 (5%)
Query: 282 TPADKPYQAPSRIGGGGGKIGDLSISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETLK 341
+ + P A S I LS++W P + + Y++ + +K S
Sbjct: 3 SGSSGP-PAVSDIRVTRSSPSSLSLAWAV-P-RAPSGAVLDYEVKYHEKGAEGPSSVR-- 57
Query: 342 EYGNVGIAVVRIPSEFYYTEYEVKVQAINDVGPGPESEVVTIFSAEDMP 390
+ + Y V+V+A ++ G GP + + D
Sbjct: 58 -FLKTSENRAELRGLKRGASYLVQVRARSEAGYGPFGQEHHSQTQLDSG 105
>1wwb_X Protein (brain derived neurotrophic factor receptor TRKB); TRK
receptor, receptor tyrosine kinase, 3D-domain swapping,
transferase; 2.10A {Homo sapiens} SCOP: b.1.1.4 PDB:
1hcf_X
Length = 103
Score = 72.5 bits (178), Expect = 7e-16
Identities = 17/86 (19%), Positives = 30/86 (34%), Gaps = 8/86 (9%)
Query: 4 EGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKI--------FENGNLLISPVSRDDS 55
+ I + PKP W +G I+ +G L + + ++
Sbjct: 15 SDHHWCIPFTVKGNPKPALQWFYNGAILNESKYICTKIHVTNHTEYHGCLQLDNPTHMNN 74
Query: 56 GIYSCTATNVHGMDESKGRLIVLHGP 81
G Y+ A N +G DE + + P
Sbjct: 75 GDYTLIAKNEYGKDEKQISAHFMGWP 100
Score = 55.1 bits (133), Expect = 1e-09
Identities = 18/102 (17%), Positives = 35/102 (34%), Gaps = 8/102 (7%)
Query: 86 QLPPKIT----IAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDG 141
P IT + + + + + W +NG + + N
Sbjct: 2 HFAPTITFLESPTSDHHWCIPFTVKGNPKPAL--QWFYNGAILNESKYICTKIHVTNHTE 59
Query: 142 --GLLEITNASFADAGEYECVVKSTVGKISTKTTVIVEGPPG 181
G L++ N + + G+Y + K+ GK + + G PG
Sbjct: 60 YHGCLQLDNPTHMNNGDYTLIAKNEYGKDEKQISAHFMGWPG 101
>2ed8_A Netrin receptor DCC; tumor suppressor protein DCC, colorectal
cancer suppressor, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 106
Score = 72.3 bits (178), Expect = 9e-16
Identities = 21/107 (19%), Positives = 42/107 (39%), Gaps = 10/107 (9%)
Query: 393 APQGVFSRGFNSTAINVTWNPIELIRENIRGRLIGHRIKYWKEDNPEETAVYYLSRTTRN 452
+ + + + T+I +TW P G + G+R+ + +E +
Sbjct: 10 PVENLQAVSTSPTSILITWEPPA----YANGPVQGYRLFCTEVSTGKEQNI----EVDGL 61
Query: 453 WALIVGLQPDTKYYVKVMAYNNAGEGPESERYLERTYRKAPQKPPSA 499
+ GL+ T+Y ++ +AYN G G ++ T + P S
Sbjct: 62 SYKLEGLKKFTEYSLRFLAYNRYGPGVSTDDITVVTLSDSG--PSSG 106
Score = 66.1 bits (162), Expect = 1e-13
Identities = 19/90 (21%), Positives = 37/90 (41%), Gaps = 7/90 (7%)
Query: 496 PPSAVHIKGINPTTVHVTWRYVSPSFEEEPIIGYKVRVWEVDQDMSRANDTIIPVGNTLD 555
P + +PT++ +TW P++ P+ GY++ EV + + + L
Sbjct: 10 PVENLQAVSTSPTSILITWE--PPAYANGPVQGYRLFCTEVSTGKEQNIEV-----DGLS 62
Query: 556 ADIVDLSPGKRYHMRVLAFSNGGDGRMSSP 585
+ L Y +R LA++ G G +
Sbjct: 63 YKLEGLKKFTEYSLRFLAYNRYGPGVSTDD 92
Score = 65.4 bits (160), Expect = 3e-13
Identities = 19/101 (18%), Positives = 30/101 (29%), Gaps = 12/101 (11%)
Query: 177 EGPPGLPGGVQVVEVHKTSATIQWTDGATNGRPITHYKIIARTNWNSTWFNVSEHVIGKE 236
PG +Q V TS I W A P+ Y++ N+
Sbjct: 5 SSGPGPVENLQAVSTSPTSILITWEPPAYANGPVQGYRLFCTEVSTGKEQNIE------- 57
Query: 237 VDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPS 277
+E L ++ Y + +A N G G +
Sbjct: 58 ----VDGLSYKLEG-LKKFTEYSLRFLAYNRYGPGVSTDDI 93
Score = 51.5 bits (124), Expect = 2e-08
Identities = 21/94 (22%), Positives = 39/94 (41%), Gaps = 22/94 (23%)
Query: 304 LSISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETLKEYGNVGIAVVRIPSEFY----- 358
+ I+WEP P N P Y++F + + + Q+ + + Y
Sbjct: 24 ILITWEP-P-AYANGPVQGYRLFCTEVSTGKEQN-------------IEVDGLSYKLEGL 68
Query: 359 --YTEYEVKVQAINDVGPGPESEVVTIFSAEDMP 390
+TEY ++ A N GPG ++ +T+ + D
Sbjct: 69 KKFTEYSLRFLAYNRYGPGVSTDDITVVTLSDSG 102
>3mj6_A Junctional adhesion molecule-like; immunoglobulin tandem domain,
cell adhesion, cell junction, glycoprotein,
immunoglobulin domain, membrane; HET: NAG FUC; 2.19A
{Mus musculus} PDB: 3mj7_A* 3mj9_A*
Length = 268
Score = 76.8 bits (188), Expect = 1e-15
Identities = 34/227 (14%), Positives = 65/227 (28%), Gaps = 52/227 (22%)
Query: 2 AGEGGNVTIFC---NPEAAPKPKFVWKKDGNIIGS------------------GGRRKIF 40
G +V + C E + W + + R +
Sbjct: 17 VHVGESVLMGCVVQRTEEKHVDRVDWLFSKDKDDASEYVLFYYSNLSVPTGRFQNRSHLV 76
Query: 41 -----ENGNLLISPVSRDDSGIYSCTATNVHGMDESKGRLIVLHGPSYYEQLPPKITIAA 95
+G+LL+ V + D GIY+C + K + + P P + +
Sbjct: 77 GDTFHNDGSLLLQDVQKADEGIYTCEIRLKNESMVMKKPVELWVLPEE----PRDLRVRV 132
Query: 96 HRNLQLRCSAHTEELLDVAYI-WT---------------HNGVRIGNMDLNELETPNINI 139
Q+RCS + E V + W + +R G +++
Sbjct: 133 GDTTQMRCSIQSTEEKRVTKVNWMFSSGSHTEEETVLSYDSNMRSGKFQSLGRFRNRVDL 192
Query: 140 DG------GLLEITNASFADAGEYECVVKSTVGKISTKTTVIVEGPP 180
G G +++ +D G Y C + + + V
Sbjct: 193 TGDISRNDGSIKLQTVKESDQGIYTCSIYVGKLESRKTIVLHVVQDE 239
Score = 49.1 bits (116), Expect = 2e-06
Identities = 18/121 (14%), Positives = 39/121 (32%), Gaps = 18/121 (14%)
Query: 88 PPKITIAAHRNLQLRCSAHTEELLDVAYI-WTHNGVRIGNMDLNELETPNINIDGGL--- 143
P++ + ++ + C E V + W + + + N+++ G
Sbjct: 12 SPQLRVHVGESVLMGCVVQRTEEKHVDRVDWLFSKDKDDASEYVLFYYSNLSVPTGRFQN 71
Query: 144 --------------LEITNASFADAGEYECVVKSTVGKISTKTTVIVEGPPGLPGGVQVV 189
L + + AD G Y C ++ + K V + P P ++V
Sbjct: 72 RSHLVGDTFHNDGSLLLQDVQKADEGIYTCEIRLKNESMVMKKPVELWVLPEEPRDLRVR 131
Query: 190 E 190
Sbjct: 132 V 132
Score = 48.3 bits (114), Expect = 3e-06
Identities = 11/51 (21%), Positives = 18/51 (35%)
Query: 42 NGNLLISPVSRDDSGIYSCTATNVHGMDESKGRLIVLHGPSYYEQLPPKIT 92
+G++ + V D GIY+C+ L V+ P T
Sbjct: 200 DGSIKLQTVKESDQGIYTCSIYVGKLESRKTIVLHVVQDEFQRTISPTPPT 250
>2cr3_A Basic fibroblast growth factor receptor 1; IG fold, FGFR1,
BFGF-R, structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 99
Score = 72.0 bits (177), Expect = 1e-15
Identities = 15/81 (18%), Positives = 28/81 (34%), Gaps = 2/81 (2%)
Query: 2 AGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCT 61
G + + C W +DG + R +I + + DSG+Y+C
Sbjct: 15 VHPGDLLQLRCRLRDDV-QSINWLRDGVQLAESNRTRI-TGEEVEVQDSVPADSGLYACV 72
Query: 62 ATNVHGMDESKGRLIVLHGPS 82
++ G D + + V
Sbjct: 73 TSSPSGSDTTYFSVNVSDALP 93
Score = 60.5 bits (147), Expect = 1e-11
Identities = 23/93 (24%), Positives = 37/93 (39%), Gaps = 10/93 (10%)
Query: 88 PPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEIT 147
+ LQLRC + + W +GV++ E+ I G +E+
Sbjct: 10 VESFLVHPGDLLQLRCRLRDDVQ---SINWLRDGVQLA-------ESNRTRITGEEVEVQ 59
Query: 148 NASFADAGEYECVVKSTVGKISTKTTVIVEGPP 180
++ AD+G Y CV S G +T +V V
Sbjct: 60 DSVPADSGLYACVTSSPSGSDTTYFSVNVSDAL 92
>2q7n_A Leukemia inhibitory factor receptor; cytokine cell surface receptor
complex LIFR LIF, cytokine RE cytokine complex; HET: NAG
FUC MAN; 4.00A {Mus musculus}
Length = 488
Score = 78.8 bits (193), Expect = 1e-15
Identities = 32/217 (14%), Positives = 62/217 (28%), Gaps = 9/217 (4%)
Query: 377 ESEVVTIFSAEDMPQVAPQGVFSRGFNSTAINVTWNPIELIRENIRGRLIGHRIKYWKED 436
+ +V P PQ + + I +WNP I + R + +
Sbjct: 273 DDDVYGTVVFAGYPPDVPQKLSCETHDLKEIICSWNPGR-ITGLVGPRNTEYTLFESISG 331
Query: 437 NPEETAVYYLSRTTRNWALIVGLQPDTKYYVKVMAYNNAGEGPESERYLERTYRKAPQKP 496
+ + + N G+ + +
Sbjct: 332 KSAVFHRIEGLTNETYRLGVQMHPGQEIHNFTLTGRNPLGQ--AQSAVVINVTERVAPHD 389
Query: 497 PSAVHIKGINPTTVHVTWRYVSPSFEEEPIIGYKVRVWEVDQDMSRANDTIIPV-GNTLD 555
P+++ +K IN T V +W P + + ++ + + + N TI +T
Sbjct: 390 PTSLKVKDINSTVVTFSWY--LPGNFTKINLLCQIEICKANSKKEVRNATIRGAEDSTYH 447
Query: 556 ADIVDLSPGKRYHMRVLAFSNGGDGRMS--SPAITFQ 590
+ L+P Y RV S + S S
Sbjct: 448 VAVDKLNPYTAYTFRVRCSSKTF-WKWSRWSDEKRHL 483
Score = 66.5 bits (161), Expect = 1e-11
Identities = 42/312 (13%), Positives = 80/312 (25%), Gaps = 32/312 (10%)
Query: 71 SKGRLIVLHGPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLN 130
S + I + P + A N+ + C + T+ + + +
Sbjct: 193 SPLKNISWIRNTETNVFPQDKVVLAGSNMTICCMSPTK---------------VLSGQIG 237
Query: 131 ELETPNINIDGGLLEITNASFADAGEYECVVKSTVGKISTKTTVIVEGPPGLPGGVQVVE 190
P I++ G + I + + + T V PP +P +
Sbjct: 238 NTLRPLIHLYGQTVAIHILNIPVSENSGTNIIFITDDDVYGTVVFAGYPPDVPQKLSCET 297
Query: 191 VHKTSATIQWTDGAT---NGRPITHYKIIARTNWNSTWFNVSEHVIGKEVDRYTGRKEAS 247
W G G T Y + + S F ++ T
Sbjct: 298 HDLKEIICSWNPGRITGLVGPRNTEYTLFESISGKSAVF--------HRIEGLTNETYRL 349
Query: 248 IENVLVPWSTYEFKVIAGNELGYGEPSSPSPQYNTPADKPYQAPSRIGGGGGKIGDLSIS 307
+ + F + N LG + + N P+ + ++ S
Sbjct: 350 GVQMHPGQEIHNFTLTGRNPLG---QAQSAVVINVTERVAPHDPTSLKVKDINSTVVTFS 406
Query: 308 WEPLPREKQNAPNIYYKIFWRKKNDTEFQSETLKEYGNVGIAVVRIPSEFYYTEYEVKVQ 367
W N+ +I K N + V + YT Y +V+
Sbjct: 407 WY--LPGNFTKINLLCQIEICKANSKKEVRNATIRGAEDSTYHVAVDKLNPYTAYTFRVR 464
Query: 368 AINDVGPGPESE 379
+ S
Sbjct: 465 CSSK-TFWKWSR 475
Score = 63.8 bits (154), Expect = 8e-11
Identities = 34/278 (12%), Positives = 74/278 (26%), Gaps = 22/278 (7%)
Query: 207 GRPITHYKIIARTNWNSTWFNVSEHVIGKEVDRYTGRKEASIENVLVPWSTYEFKVIAGN 266
G +T + + N +I G+ A + +I
Sbjct: 218 GSNMTICCMSPTKVLSGQIGNTLRPLI-----HLYGQTVAIHILNIPVSENSGTNIIFIT 272
Query: 267 ELGYGEPSSPSPQYNTPADKPYQAPSRIGGGGGKIGDLSISWEPLPREKQNAPNIYYKIF 326
+ A P P ++ + ++ SW P R +
Sbjct: 273 DDDVYGTV-------VFAGYPPDVPQKLSCETHDLKEIICSWNP-GRITGLVGPRNTEYT 324
Query: 327 WRKKNDTEFQSETLKEYGNVGIAVVRIPSEFYYTEYEVKVQAINDVGPGPESEVVTIFSA 386
+ + E + + + + N +G + V+ +
Sbjct: 325 LFESISGKSAVFHRIEGLTNETYRLGVQMHPGQEIHNFTLTGRNPLGQAQSAVVINVT-- 382
Query: 387 EDMPQVAPQGVFSRGFNSTAINVTWNPIELIRENIRGRLIGHRIKYWKEDNPEETAVYYL 446
E + P + + NST + +W N + +I+ K ++ +E +
Sbjct: 383 ERVAPHDPTSLKVKDINSTVVTFSWYL----PGNFTKINLLCQIEICKANSKKEVRNATI 438
Query: 447 S--RTTRNWALIVGLQPDTKYYVKVMAYNNAGEGPESE 482
+ + L P T Y +V + S
Sbjct: 439 RGAEDSTYHVAVDKLNPYTAYTFRVRCSSK-TFWKWSR 475
Score = 47.3 bits (111), Expect = 1e-05
Identities = 39/285 (13%), Positives = 84/285 (29%), Gaps = 33/285 (11%)
Query: 4 EGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTAT 63
G N+TI C + +I G+ N+ +S S + I T
Sbjct: 217 AGSNMTICCMSPTKVLSGQIGNTLRPLIHLYGQTVAIHILNIPVSENS--GTNIIFITDD 274
Query: 64 NVHGMDESKGRLIVLHGPSYYEQLPPKITIAAHRNLQLRCS------AHTEELLDVAYIW 117
+V+G G Y +P K++ H ++ CS + Y
Sbjct: 275 DVYGTVVFAG---------YPPDVPQKLSCETHDLKEIICSWNPGRITGLVGPRNTEYTL 325
Query: 118 THNGVRIGNMDLNELETPNINIDGGLLEITNASFADAGEYECVVKSTVGKISTKTTV--- 174
+ + N L + + + ++ +G+ + +
Sbjct: 326 FESISGKSAVFHRIEGLTNETYR---LGVQMHPGQEIHNFTLTGRNPLGQAQSAVVINVT 382
Query: 175 -IVEGPPGLPGGVQVVEVHKTSATIQWTDGATNGRPITHYKIIARTNWNSTWFNVSEHVI 233
V P ++V +++ T T W + +I + +
Sbjct: 383 ERVAPHD--PTSLKVKDINSTVVTFSWYLPGNFTKINLLCQIEICKANSKKEVRNATI-- 438
Query: 234 GKEVDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPSP 278
+++ L P++ Y F+V ++ + + S S
Sbjct: 439 ---RGAEDSTYHVAVDK-LNPYTAYTFRVRCSSK-TFWKWSRWSD 478
Score = 36.5 bits (83), Expect = 0.026
Identities = 35/428 (8%), Positives = 97/428 (22%), Gaps = 66/428 (15%)
Query: 180 PGLPGGVQVVEVHKTSATIQWTDGATNGRPITHYKIIARTNWNSTWFNVSEHVIGKEVDR 239
++ + W P T I + ++S
Sbjct: 4 DDDDKDLKCTTNNMRVWDCTWPAPLGVS-PGTVKDICIKDRFHSCH-------------- 48
Query: 240 YTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPSPQYNTPADKPYQAPSRIG-GGG 298
+ +++ + +E + N + P + P +
Sbjct: 49 --PLETTNVKIPALSPGDHEVTINYLNGFQSKFTLNEKDVSLIP-----ETPEILDLSAD 101
Query: 299 GKIGDLSISWEPLPREKQNAPNIYYKIFWRKKNDT-----EFQSETLKEYGNVGIAVVRI 353
L + W + N ++I + T + L V
Sbjct: 102 FFTSSLLLKWNDRGSALPHPSNATWEIKVLQNPRTEPVALVLLNTMLSGKDTVQHWNWTS 161
Query: 354 PSEFYYTEYEVKVQAINDVGPGPESEVVTIFSAEDMPQVAPQG---------VFSRGFNS 404
+ V ++ D + + +S V G N
Sbjct: 162 DLPLQCATHSVSIRWHIDSPHFSGYKEWSDWSPLKNISWIRNTETNVFPQDKVVLAGSNM 221
Query: 405 TAINVTWNPIELIRENIRGRLIGHRIKYWKEDNPEETAVYYLSRTTRNWALIVGLQPDTK 464
T + + IG+ ++ + A++ L+ ++
Sbjct: 222 TICCM-------SPTKVLSGQIGNTLRPLIHLYGQTVAIHILNIPV------------SE 262
Query: 465 YYVKVMAYNNAGEGPESERYLERTYRKAPQKPPSAVHIKGINPTTVHVTWRYVSPSFEEE 524
+ + + + Y + P P + + + + +W +
Sbjct: 263 NSGTNIIFIT-----DDDVYGTVVFAGYPPDVPQKLSCETHDLKEIICSWNPGRITGLVG 317
Query: 525 P-IIGYKVRVWEVDQDMSRANDTIIPVGNTLDADIVDLSPGKRYHMRVLAFSNGGDGRMS 583
P Y + + + + + ++ + + G +
Sbjct: 318 PRNTEYTLFESISGKSAVFHRIEGLTNETY-RLGVQMHPGQEIHNFTLTGRNPLG---QA 373
Query: 584 SPAITFQM 591
A+ +
Sbjct: 374 QSAVVINV 381
>1sy6_A T-cell surface glycoprotein CD3 gamma/epsilon chain; CD3 epsilon,
OKT3 FAB, signaling protein/antibiotic complex; 2.10A
{Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 2atp_E*
Length = 204
Score = 74.9 bits (183), Expect = 1e-15
Identities = 36/198 (18%), Positives = 59/198 (29%), Gaps = 44/198 (22%)
Query: 4 EGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTAT 63
E G+V + C+ A W KDG +IG K + ++D G+Y C +
Sbjct: 17 EDGSVLLTCD---AEAKNITWFKDGKMIGFLTEDKKK----WNLGSNAKDPRGMYQCKGS 69
Query: 64 NVHGM------------DESKGRLIVLHGPS---------------YYEQLPPKITIAAH 96
D K Q P K++I+
Sbjct: 70 QNKSKPLQVYYRMGSADDAKKDAAKKDDAKKDDAKKDGSDGNEEMGGITQTPYKVSISGT 129
Query: 97 RNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEITNASFA-DAG 155
+ L C + +W HN I + + NI D L + S +G
Sbjct: 130 T-VILTCPQYPGS----EILWQHNDKNI----GGDEDDKNIGSDEDHLSLKEFSELEQSG 180
Query: 156 EYECVVKSTVGKISTKTT 173
Y C + + + +
Sbjct: 181 YYVCYPRGSKPEDANFYL 198
Score = 31.8 bits (71), Expect = 0.46
Identities = 15/96 (15%), Positives = 25/96 (26%), Gaps = 10/96 (10%)
Query: 117 WTHNGVRIGNMDLNELETPNINIDGGLLEITNASFADAGEYECVVKSTVGKISTKTTVIV 176
W +G IG + D + + + G Y+C K +
Sbjct: 34 WFKDGKMIGF----------LTEDKKKWNLGSNAKDPRGMYQCKGSQNKSKPLQVYYRMG 83
Query: 177 EGPPGLPGGVQVVEVHKTSATIQWTDGATNGRPITH 212
+ + K A +DG IT
Sbjct: 84 SADDAKKDAAKKDDAKKDDAKKDGSDGNEEMGGITQ 119
>2haz_A N-CAM 1, neural cell adhesion molecule 1; fibronectin type III
repeat, FN1, beta sandwich; 1.70A {Homo sapiens} SCOP:
b.1.2.1
Length = 105
Score = 72.0 bits (177), Expect = 1e-15
Identities = 31/111 (27%), Positives = 47/111 (42%), Gaps = 19/111 (17%)
Query: 178 GPPGLPGGVQVVEVHKTSATIQWTD-GATNGRPITHYKIIART----NWNSTWFNVSEHV 232
P + VE + ++A +Q+ + AT G PI YK R W+S W++ E
Sbjct: 8 SSPSID----QVEPYSSTAQVQFDEPEATGGVPILKYKAEWRAVGEEVWHSKWYDAKEAS 63
Query: 233 IGKEVDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPSPQYNTP 283
+ V +I L P +TY ++ A N G GE S+ S P
Sbjct: 64 MEGIV---------TIVG-LKPETTYAVRLAALNGKGLGEISAASEFKTQP 104
Score = 47.8 bits (114), Expect = 4e-07
Identities = 21/102 (20%), Positives = 34/102 (33%), Gaps = 3/102 (2%)
Query: 282 TPADKPYQAPSRIGGGGGKIGDLSISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETLK 341
+ D P +PS + ++ P P + YK WR + + S+
Sbjct: 2 SHMDTP-SSPSIDQVEPYS-STAQVQFDE-PEATGGVPILKYKAEWRAVGEEVWHSKWYD 58
Query: 342 EYGNVGIAVVRIPSEFYYTEYEVKVQAINDVGPGPESEVVTI 383
+V I T Y V++ A+N G G S
Sbjct: 59 AKEASMEGIVTIVGLKPETTYAVRLAALNGKGLGEISAASEF 100
Score = 46.6 bits (111), Expect = 1e-06
Identities = 20/92 (21%), Positives = 32/92 (34%), Gaps = 5/92 (5%)
Query: 496 PPSAVHIKGINPTTVHVTWRYVSPSFE-EEPIIGYKVRVWEV-DQDMSRANDTIIPVGNT 553
PS ++ +T V + P PI+ YK V ++
Sbjct: 9 SPSIDQVE-PYSSTAQVQFD--EPEATGGVPILKYKAEWRAVGEEVWHSKWYDAKEASME 65
Query: 554 LDADIVDLSPGKRYHMRVLAFSNGGDGRMSSP 585
IV L P Y +R+ A + G G +S+
Sbjct: 66 GIVTIVGLKPETTYAVRLAALNGKGLGEISAA 97
Score = 39.7 bits (93), Expect = 3e-04
Identities = 19/82 (23%), Positives = 34/82 (41%), Gaps = 7/82 (8%)
Query: 404 STAINVTWNPIELIRENIRGRLI-GHRIKYWKEDNPEETAVYYLSRT--TRNWALIVGLQ 460
S+ V ++ E G I ++ ++ + +Y ++ IVGL+
Sbjct: 19 SSTAQVQFDEPE----ATGGVPILKYKAEWRAVGEEVWHSKWYDAKEASMEGIVTIVGLK 74
Query: 461 PDTKYYVKVMAYNNAGEGPESE 482
P+T Y V++ A N G G S
Sbjct: 75 PETTYAVRLAALNGKGLGEISA 96
>2crz_A Fibronectin type-III domain containing protein 3A; structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
b.1.2.1
Length = 110
Score = 71.6 bits (176), Expect = 2e-15
Identities = 25/114 (21%), Positives = 41/114 (35%), Gaps = 15/114 (13%)
Query: 177 EGPPGLPGGVQVV-EVHKTSATIQWTDGA-TNGRPITHYKIIARTNWNSTWFNVSEHVIG 234
GPPG ++ ++W G PI+ Y + V
Sbjct: 6 SGPPGPCLPPRLQGRPKAKEIQLRWGPPLVDGGSPISCYSVEMSPIEKDEPREV------ 59
Query: 235 KEVDRYTGRK-EASIENVLVPWSTYEFKVIAGNELGYGEPSSPSPQYNTPADKP 287
Y G + E ++ + L+P TY F++ A N++G+G S P P
Sbjct: 60 -----YQGSEVECTVSS-LLPGKTYSFRLRAANKMGFGPFSEKCDITTAPGSGP 107
Score = 46.6 bits (111), Expect = 1e-06
Identities = 21/101 (20%), Positives = 38/101 (37%), Gaps = 8/101 (7%)
Query: 487 RTYRKAPQKPPSAVHIKG-INPTTVHVTWRYVSPSFEEE-PIIGYKVRVWEVDQDMSRAN 544
+ P P ++G + + W P + PI Y V + +++D
Sbjct: 2 SSGSSGPPGPCLPPRLQGRPKAKEIQLRWG--PPLVDGGSPISCYSVEMSPIEKDEP--- 56
Query: 545 DTIIPVGNTLDADIVDLSPGKRYHMRVLAFSNGGDGRMSSP 585
+ G+ ++ + L PGK Y R+ A + G G S
Sbjct: 57 -REVYQGSEVECTVSSLLPGKTYSFRLRAANKMGFGPFSEK 96
Score = 44.3 bits (105), Expect = 7e-06
Identities = 23/97 (23%), Positives = 34/97 (35%), Gaps = 11/97 (11%)
Query: 404 STAINVTWNPIELIRENIRGRLI-GHRIKYWKEDNPEETAVYYLSRTTRNWALIVGLQPD 462
+ I + W P G I + ++ + E VY S + L P
Sbjct: 23 AKEIQLRWGP----PLVDGGSPISCYSVEMSPIEKDEPREVYQGSEVE---CTVSSLLPG 75
Query: 463 TKYYVKVMAYNNAGEGPESERYLERTYRKAPQKPPSA 499
Y ++ A N G GP SE + AP PS+
Sbjct: 76 KTYSFRLRAANKMGFGPFSE---KCDITTAPGSGPSS 109
Score = 42.7 bits (101), Expect = 2e-05
Identities = 17/94 (18%), Positives = 28/94 (29%), Gaps = 20/94 (21%)
Query: 304 LSISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETLKEYGNVGIAVVRIPSEFY----- 358
+ + W P P +P Y + E + V +
Sbjct: 26 IQLRWGP-PLVDGGSPISCYSVEMSPIEKDEPR------------EVYQGSEVECTVSSL 72
Query: 359 --YTEYEVKVQAINDVGPGPESEVVTIFSAEDMP 390
Y +++A N +G GP SE I +A
Sbjct: 73 LPGKTYSFRLRAANKMGFGPFSEKCDITTAPGSG 106
>1ccz_A Protein (CD58); LFA-3, glycoprotein; HET: NAG; 1.80A {Homo sapiens}
SCOP: b.1.1.1 b.1.1.3 PDB: 1ci5_A 1qa9_B
Length = 171
Score = 72.7 bits (178), Expect = 3e-15
Identities = 33/187 (17%), Positives = 51/187 (27%), Gaps = 38/187 (20%)
Query: 1 YAGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGS-------------GGRRKIFENGNLLI 47
Y GNVT P P + +WKK + + +G+L I
Sbjct: 6 YGVVYGNVTFHV-PSNVPLKEVLWKKQKDKVAELENSEFRAFSSFKNRVYLDTVSGSLTI 64
Query: 48 SPVSRDDSGIYSCTATNVHGMDESKGRLIVLHGPSYYEQLPPKITIAAHRNLQLRCSAHT 107
++ D Y + N+ K L VL S P I N L C
Sbjct: 65 YNLTSSDEDEYEMESPNITD--TMKFFLYVLEMVS-----KPMIYWECS-NATLTCEV-- 114
Query: 108 EELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEITNASFADAGEYECVVKSTVGK 167
E DV + + ++ ++C + V +
Sbjct: 115 LEGTDVELKLYQGKEHLRS--------------LRQKTMSYQWTNLRAPFKCKAVNRVSQ 160
Query: 168 ISTKTTV 174
S V
Sbjct: 161 ESEMEVV 167
Score = 38.8 bits (90), Expect = 0.002
Identities = 11/68 (16%), Positives = 25/68 (36%), Gaps = 7/68 (10%)
Query: 116 IWTHNGVRIGNMDLNELETPN-------INIDGGLLEITNASFADAGEYECVVKSTVGKI 168
+W ++ ++ +E + ++ G L I N + +D EYE + +
Sbjct: 27 LWKKQKDKVAELENSEFRAFSSFKNRVYLDTVSGSLTIYNLTSSDEDEYEMESPNITDTM 86
Query: 169 STKTTVIV 176
V+
Sbjct: 87 KFFLYVLE 94
>3v6o_A Leptin receptor; receptor-antibody complex, cytokine receptor,
antibody FAB F immunoglobulin fold; HET: NAG; 1.95A
{Homo sapiens}
Length = 206
Score = 73.6 bits (180), Expect = 4e-15
Identities = 22/193 (11%), Positives = 56/193 (29%), Gaps = 17/193 (8%)
Query: 299 GKIGDLSISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETLKEYG--------NVGIAV 350
G + ++ W Q+ ++ + + + ++ + G
Sbjct: 13 GYLTKMTCRWSTSTI--QSLAESTLQLRYHRSSLYCSDIPSIHPISEPKDCYLQSDGFYE 70
Query: 351 VRIPSEFYYTEYEVKVQAINDVGPGPESEVVTIFSAEDMPQVAPQGV-FSRGFNSTAINV 409
F + Y + ++ + +G +S + + + P V N + +
Sbjct: 71 CIFQPIFLLSGYTMWIRINHSLGSL-DSPPTCVLPDSVVKPLPPSSVKAEITINIGLLKI 129
Query: 410 TWNPIELIRENIRGRLIGHRIKYWKEDNPEETAVYYLSRTTRNWALIVGLQPDTKYYVKV 469
+W N++ +I+Y + +Y + + Y V+V
Sbjct: 130 SWEKPVFPENNLQ-----FQIRYGLSGKEVQWKMYEVYDAKSKSVSLPVPDLCAVYAVQV 184
Query: 470 MAYNNAGEGPESE 482
G G S
Sbjct: 185 RCKRLDGLGYWSN 197
Score = 50.1 bits (119), Expect = 4e-07
Identities = 28/200 (14%), Positives = 59/200 (29%), Gaps = 15/200 (7%)
Query: 398 FSRGFNSTAINVTWNPIELIRENIRG-RLIGHRIKYWKEDNPE-----ETAVYYLSRTTR 451
+ G T + W+ + +L HR + D P E YL
Sbjct: 10 ETDG-YLTKMTCRWSTSTIQSLAESTLQLRYHRSSLYCSDIPSIHPISEPKDCYLQSDGF 68
Query: 452 NWALIVGLQPDTKYYVKVMAYNNAGEGPESERYLERTYRKAPQKPPSAVHIKGI-NPTTV 510
+ + + Y + + ++ G +S PPS+V + N +
Sbjct: 69 YECIFQPIFLLSGYTMWIRINHSLGSL-DSPPTCVLPDSVVKPLPPSSVKAEITINIGLL 127
Query: 511 HVTWRYVSPSFEEEPIIGYKVRVWEVDQDMSRANDTIIPVGNTLDADIVDLSPGKRYHMR 570
++W E + +++R +++ + + + Y ++
Sbjct: 128 KISW---EKPVFPENNLQFQIRYGLSGKEVQWKMYEVYD-AKSKSVSLPVPDLCAVYAVQ 183
Query: 571 VLAFSNGGDGRMS--SPAIT 588
V G G S S
Sbjct: 184 VRCKRLDGLGYWSNWSNPAY 203
Score = 49.7 bits (118), Expect = 5e-07
Identities = 35/191 (18%), Positives = 63/191 (32%), Gaps = 14/191 (7%)
Query: 194 TSATIQWTDGATNGRPITHYKIIARTNWNSTWFNVSEHVIG----KEVDRYTGRKEASIE 249
T T +W+ + ++ R + +S + + + K+ + I
Sbjct: 16 TKMTCRWSTSTIQSLAESTLQL--RYHRSSLYCSDIPSIHPISEPKDCYLQSDGFYECIF 73
Query: 250 NVLVPWSTYEFKVIAGNELGYGEPSSPSPQYNTPADKPYQAPSRI-GGGGGKIGDLSISW 308
+ S Y + + L G SP + PS + IG L ISW
Sbjct: 74 QPIFLLSGYTMWIRINHSL--GSLDSPPTCVLPDSVVKPLPPSSVKAEITINIGLLKISW 131
Query: 309 EPLPREKQNAPNIYYKIFWRKKNDTEFQSETLKEYGNVGIAVVRIPSEFYYTEYEVKVQA 368
E + N+ ++I + E Q + + Y +V +P Y V+V+
Sbjct: 132 EKPVFPEN---NLQFQIRYGLSGK-EVQWKMYEVYDAKSKSVS-LPVPDLCAVYAVQVRC 186
Query: 369 INDVGPGPESE 379
G G S
Sbjct: 187 KRLDGLGYWSN 197
Score = 31.2 bits (70), Expect = 0.76
Identities = 17/123 (13%), Positives = 36/123 (29%), Gaps = 13/123 (10%)
Query: 160 VVKSTVGKISTKTTVIVEG---PPGLPGGVQVVEVHKTSA-TIQWTDGATNGRPITHYKI 215
+ ++G + + T ++ P P V+ I W + ++I
Sbjct: 87 RINHSLGSLDSPPTCVLPDSVVKPLPPSSVKAEITINIGLLKISWEKPVFPENNLQ-FQI 145
Query: 216 IARTNWNSTWFNVSEHVIGKEVDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSS 275
+ + + E V + + V + Y +V G G S+
Sbjct: 146 RYGLSGKEVQWKMYE-VYDAKSKSVSLP-------VPDLCAVYAVQVRCKRLDGLGYWSN 197
Query: 276 PSP 278
S
Sbjct: 198 WSN 200
>2ens_A Advanced glycosylation END product-specific receptor;
beta-sandwich, C2-SET, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 96
Score = 69.7 bits (171), Expect = 5e-15
Identities = 20/74 (27%), Positives = 31/74 (41%), Gaps = 6/74 (8%)
Query: 4 EGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTAT 63
GG VT+ C A P P+ W KDG + + L++ + D G YSC AT
Sbjct: 24 PGGTVTLTCEVPAQPSPQIHWMKDGVPLPLPP------SPVLILPEIGPQDQGTYSCVAT 77
Query: 64 NVHGMDESKGRLIV 77
+ + + +
Sbjct: 78 HSSHGPQESRAVSI 91
Score = 45.9 bits (109), Expect = 2e-06
Identities = 15/94 (15%), Positives = 27/94 (28%), Gaps = 16/94 (17%)
Query: 88 PPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEIT 147
P +A + L C + + W +GV + +L +
Sbjct: 17 PEGGAVAPGGTVTLTCEVPAQPSPQI--HWMKDGVPLPLPP------------SPVLILP 62
Query: 148 NASFADAGEYECVVKSTVGKI--STKTTVIVEGP 179
D G Y CV + S ++ + P
Sbjct: 63 EIGPQDQGTYSCVATHSSHGPQESRAVSISIIEP 96
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG
containing, ligand binding protein,membr protein; HET:
NAG MAN; 2.70A {Homo sapiens}
Length = 477
Score = 76.3 bits (188), Expect = 7e-15
Identities = 23/77 (29%), Positives = 30/77 (38%), Gaps = 3/77 (3%)
Query: 4 EGGNVTIFCNPEAAPKPKFVWKKDGNII---GSGGRRKIFENGNLLISPVSRDDSGIYSC 60
EG V C + P P +W + S GR +F +G L + D+G Y C
Sbjct: 399 EGHTVQFVCRADGDPPPAILWLSPRKHLVSAKSNGRLTVFPDGTLEVRYAQVQDNGTYLC 458
Query: 61 TATNVHGMDESKGRLIV 77
A N G D L V
Sbjct: 459 IAANAGGNDSMPAHLHV 475
Score = 53.2 bits (128), Expect = 1e-07
Identities = 17/97 (17%), Positives = 33/97 (34%), Gaps = 5/97 (5%)
Query: 80 GPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINI 139
++ ++ + +Q C A + + +W + + N T +
Sbjct: 384 RARIRDRKAQQVFVDEGHTVQFVCRADGDPPPAI--LWLSPRKHLVSAKSNGRLTVFPD- 440
Query: 140 DGGLLEITNASFADAGEYECVVKSTVGKISTKTTVIV 176
G LE+ A D G Y C+ + G S + V
Sbjct: 441 --GTLEVRYAQVQDNGTYLCIAANAGGNDSMPAHLHV 475
>2db8_A Tripartite motif protein 9, isoform 2; ring finger protein 91,
TRIM9, KIAA0282, RNF91, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 110
Score = 69.8 bits (171), Expect = 8e-15
Identities = 24/120 (20%), Positives = 41/120 (34%), Gaps = 15/120 (12%)
Query: 169 STKTTVIVEGPPGLPGGVQVVEVHKTSATIQWTDGATNGRPITHYKIIARTNWNSTWFNV 228
S+ ++ V P L ++ H SAT+ W + P Y + + V
Sbjct: 2 SSGSSGPVPATPILQ--LEECCTHNNSATLSWKQPPLSTVPADGYILELDDGNGGQFREV 59
Query: 229 SEHVIGKEVDRYTGRK-EASIENVLVPWSTYEFKVIAGNELGYGEPSSPSPQYNTPADKP 287
Y G++ +++ L STY +V A N+ G S + P
Sbjct: 60 -----------YVGKETMCTVDG-LHFNSTYNARVKAFNKTGVSPYSKTLVLQTSEGSGP 107
Score = 55.9 bits (135), Expect = 6e-10
Identities = 15/96 (15%), Positives = 33/96 (34%), Gaps = 10/96 (10%)
Query: 404 STAINVTWNPIELIRENIRGRLIGHRIKYWKEDNPEETAVYYLSRTTRNWALIVGLQPDT 463
+ + ++W G+ ++ + + VY + GL ++
Sbjct: 24 NNSATLSWKQ----PPLSTVPADGYILELDDGNGGQFREVY---VGKETMCTVDGLHFNS 76
Query: 464 KYYVKVMAYNNAGEGPESERYLERTYRKAPQKPPSA 499
Y +V A+N G P S+ + + PS+
Sbjct: 77 TYNARVKAFNKTGVSPYSK---TLVLQTSEGSGPSS 109
Score = 47.8 bits (114), Expect = 5e-07
Identities = 18/95 (18%), Positives = 32/95 (33%), Gaps = 6/95 (6%)
Query: 492 APQKPPSAVHIKGINPTTVHVTWRYVSPSFEEEPIIGYKVRVWEVDQDMSRANDTIIPVG 551
P P + + + ++W+ P P GY + + + + R + VG
Sbjct: 9 VPATPILQLEECCTHNNSATLSWK--QPPLSTVPADGYILELDDGNGGQFRE----VYVG 62
Query: 552 NTLDADIVDLSPGKRYHMRVLAFSNGGDGRMSSPA 586
+ L Y+ RV AF+ G S
Sbjct: 63 KETMCTVDGLHFNSTYNARVKAFNKTGVSPYSKTL 97
Score = 43.6 bits (103), Expect = 1e-05
Identities = 15/94 (15%), Positives = 29/94 (30%), Gaps = 21/94 (22%)
Query: 304 LSISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETLKEYGNVGIAVVRIPSEFY----- 358
++SW+ P Y + N +F+ V
Sbjct: 27 ATLSWKQ--PPLSTVPADGYILELDDGNGGQFRE------------VYVGKETMCTVDGL 72
Query: 359 --YTEYEVKVQAINDVGPGPESEVVTIFSAEDMP 390
+ Y +V+A N G P S+ + + ++E
Sbjct: 73 HFNSTYNARVKAFNKTGVSPYSKTLVLQTSEGSG 106
>2e7c_A Myosin-binding protein C, fast-type; IG-like domain, fast MYBP-C,
C-protein, skeletal muscle fast-isoform, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 118
Score = 69.7 bits (171), Expect = 1e-14
Identities = 16/78 (20%), Positives = 31/78 (39%), Gaps = 4/78 (5%)
Query: 4 EGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGN---LLISPVSRDDSGIYSC 60
G + + + P+P+ VW K G + R + + + +R DSG Y
Sbjct: 38 VGEQLNLVVPFQGKPRPQVVWTKGGAPL-DTSRVHVRTSDFDTVFFVRQAARSDSGEYEL 96
Query: 61 TATNVHGMDESKGRLIVL 78
+ + D + R+ V+
Sbjct: 97 SVQIENMKDTATIRIRVV 114
Score = 54.3 bits (131), Expect = 2e-09
Identities = 23/108 (21%), Positives = 38/108 (35%), Gaps = 24/108 (22%)
Query: 88 PPKITIAAH----------RNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNI 137
PPKI + H L L + V +WT G L+T +
Sbjct: 21 PPKIRLPRHLRQTYIRKVGEQLNLVVPFQGKPRPQV--VWTKGGA--------PLDTSRV 70
Query: 138 NI----DGGLLEITNASFADAGEYECVVKSTVGKISTKTTVIVEGPPG 181
++ + + A+ +D+GEYE V+ K + + V G
Sbjct: 71 HVRTSDFDTVFFVRQAARSDSGEYELSVQIENMKDTATIRIRVVEKAG 118
>1wwc_A Protein (NT-3 growth factor receptor TRKC); TRK receptor, receptor
tyrosine kinase, 3D-domain swapping, transferase; 1.90A
{Homo sapiens} SCOP: b.1.1.4
Length = 118
Score = 69.5 bits (170), Expect = 1e-14
Identities = 17/94 (18%), Positives = 28/94 (29%), Gaps = 7/94 (7%)
Query: 7 NVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKI-------FENGNLLISPVSRDDSGIYS 59
I P P W +G + + G LL + + ++G Y+
Sbjct: 22 EHCIEFVVRGNPPPTLHWLHNGQPLRESKIIHVEYYQEGEISEGCLLFNKPTHYNNGNYT 81
Query: 60 CTATNVHGMDESKGRLIVLHGPSYYEQLPPKITI 93
A N G L P +++ P I
Sbjct: 82 LIAKNPLGTANQTINGHFLKEPFPVDEVSPTPPI 115
Score = 50.2 bits (120), Expect = 8e-08
Identities = 16/106 (15%), Positives = 28/106 (26%), Gaps = 17/106 (16%)
Query: 86 QLPPKIT----IAAHRNLQLRCSAH-----TEELLDVAYIWTHNGVRIGNMDLNELET-P 135
PP++ + T W HNG + + +E
Sbjct: 6 YYPPRVVSLEEPELRLEHCIEFVVRGNPPPT-------LHWLHNGQPLRESKIIHVEYYQ 58
Query: 136 NINIDGGLLEITNASFADAGEYECVVKSTVGKISTKTTVIVEGPPG 181
I G L + + G Y + K+ +G + P
Sbjct: 59 EGEISEGCLLFNKPTHYNNGNYTLIAKNPLGTANQTINGHFLKEPF 104
>3bpo_C Interleukin-13 receptor alpha-1 chain; IL4, IL13, IL4R, IL13R,
cytokine, glycoprotein, IM response, membrane,
phosphoprotein, secreted; HET: NAG; 3.00A {Homo sapiens}
PDB: 3bpn_C*
Length = 314
Score = 73.8 bits (180), Expect = 2e-14
Identities = 48/310 (15%), Positives = 93/310 (30%), Gaps = 41/310 (13%)
Query: 302 GDLSISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETLKEYGNVGIAVVRIPSEFYYTE 361
+ +W P P + +++Y + K D + ET +
Sbjct: 18 CTVIWTWNP-PEGASSNCSLWYFSHFGDKQDKKIAPETRRSI---------EVPLNERIC 67
Query: 362 YEVKVQAINDVGPGPESEVVTIFSA-EDMPQVAPQGVFSRGFNSTAINVTWNPIELIREN 420
+V Q + P V S E P+ A + N + + +W P
Sbjct: 68 LQVGSQCSTNESEKPSILVEKCISPPEGDPESAVTELQCIWHNLSYMKCSWLP-----GR 122
Query: 421 IRGRLIGHRIKYWKEDNPEETAVYYLSRTTRNWALIVGLQPD-----TKYYVKVMAYNNA 475
+ + YW + + R + + L ++ V++M +NA
Sbjct: 123 NTSPDTNYTLYYWHRSLEKIHQCENIFREGQYFGCSFDLTKVKDSSFEQHSVQIMVKDNA 182
Query: 476 GEGPESERYLERTYRKAPQKPPSAVHIKGINPTTVHVTWRYVSPSFEEEPIIGYKVRVWE 535
G+ S + T R P PP ++ + ++V W +P + Y+V V
Sbjct: 183 GKIKPSFNIVPLTSRVKP-DPPHIKNLS-FHNDDLYVQWE--NPQNFISRCLFYEVEVNN 238
Query: 536 VD----------QDMSRANDTIIPVGNTLDADIVDLSPGKRYHMRVLA----FSNGGDGR 581
+ + V NT + + P +R+ D
Sbjct: 239 SQTETHNVFYVQEAKCENPEFERNVENTSCFMVPGVLPDTLNTVRIRVKTNKLCYEDDKL 298
Query: 582 MS--SPAITF 589
S S ++
Sbjct: 299 WSNWSQEMSI 308
Score = 41.4 bits (96), Expect = 6e-04
Identities = 12/98 (12%), Positives = 22/98 (22%), Gaps = 9/98 (9%)
Query: 493 PQKPPSAVHIKGINPTTVHVTWRYVSPSFEEEPIIGYKVRVWEVDQDMSRANDTIIPVGN 552
Q P + + + N TV TW + Y +
Sbjct: 3 TQPPVTNLSVSVENLCTVIWTWN-PPEGASSNCSLWYFSHFGDKQDKKI--------APE 53
Query: 553 TLDADIVDLSPGKRYHMRVLAFSNGGDGRMSSPAITFQ 590
T + V L+ + +N +
Sbjct: 54 TRRSIEVPLNERICLQVGSQCSTNESEKPSILVEKCIS 91
Score = 30.3 bits (67), Expect = 1.9
Identities = 9/106 (8%), Positives = 29/106 (27%), Gaps = 10/106 (9%)
Query: 161 VKSTVGKISTKTTVIVEGPPGLPGGVQVVEVHKTSATIQWTD-GATNGRPITH---YKII 216
+K + + + V + P + H +QW + R + +
Sbjct: 185 IKPSFNIVPLTSRVKPDPPHIK-----NLSFHNDDLYVQWENPQNFISRCLFYEVEVNNS 239
Query: 217 ARTNWNSTWFNVSEHVIGKEVDRYTGRKEASIENVLVPWSTYEFKV 262
N + ++ + + ++P + ++
Sbjct: 240 QTETHNVFYVQEAKCENPEFERNVENTSCFMVPG-VLPDTLNTVRI 284
>2ckn_A Basic fibroblast growth factor receptor 1; kinase, transferase,
heparin-binding, nucleotide-binding, immunoglobulin
domain, alternatice splicing; NMR {Mus musculus}
Length = 95
Score = 68.3 bits (167), Expect = 2e-14
Identities = 15/76 (19%), Positives = 28/76 (36%), Gaps = 2/76 (2%)
Query: 2 AGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCT 61
G + + C W +DG + R +I + + DSG+Y+C
Sbjct: 21 VHPGDLLQLRCRLRDDV-QSINWLRDGVQLVESNRTRI-TGEEVEVRDSIPADSGLYACV 78
Query: 62 ATNVHGMDESKGRLIV 77
++ G D + + V
Sbjct: 79 TSSPSGSDTTYFSVNV 94
Score = 61.7 bits (150), Expect = 4e-12
Identities = 24/96 (25%), Positives = 39/96 (40%), Gaps = 10/96 (10%)
Query: 81 PSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINID 140
P + + LQLRC + + W +GV++ E+ I
Sbjct: 9 PWGVPVEVESLLVHPGDLLQLRCRLRDDVQ---SINWLRDGVQLV-------ESNRTRIT 58
Query: 141 GGLLEITNASFADAGEYECVVKSTVGKISTKTTVIV 176
G +E+ ++ AD+G Y CV S G +T +V V
Sbjct: 59 GEEVEVRDSIPADSGLYACVTSSPSGSDTTYFSVNV 94
>2fbo_J V1V2;, variable region-containing chitin-binding protein 3;
immunoglobulin, VCBP, V-type, V SET, immune system;
1.85A {Branchiostoma floridae}
Length = 250
Score = 72.6 bits (177), Expect = 2e-14
Identities = 33/237 (13%), Positives = 57/237 (24%), Gaps = 63/237 (26%)
Query: 1 YAGEGGNVTIFCNPEAA---PKPKFVWKKDGNIIGS------------------------ 33
GG V + C+ + A P W K + S
Sbjct: 13 EVHAGGTVELPCSYQLANDTQPPVISWLKGASPDRSTKVFKGNYNWQGEGLGFVESDSYK 72
Query: 34 ------GGRRKIFENGN--LLISPVSRDDSGIYSCTATNVH-----GMDESKGRLIVLHG 80
GR + L ++ V D G Y C G+D L V
Sbjct: 73 ESFGDFLGRASVANLAAPTLRLTHVHPQDGGRYWCQVAQWSIRTEFGLDAKSVVLKVTGH 132
Query: 81 ---PSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNI 137
+ + + + ++ + C +V W N + +
Sbjct: 133 TPSNNVHVSTAEVVQVDEGNDITMTCPCTDCANANVT--WYTGPTFFENYETGTYQPLAN 190
Query: 138 NI------------------DGGLLEITNASFADAGEYECVVKSTVGKISTKTTVIV 176
L I A DAG C + + G++ + +
Sbjct: 191 KNQFGITWFSSEIAGRASFSGARNLVIRAAKITDAGRVWCELATGQGELDADRSSTI 247
Score = 66.1 bits (160), Expect = 3e-12
Identities = 15/102 (14%), Positives = 24/102 (23%), Gaps = 24/102 (23%)
Query: 2 AGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSG------------------------GRR 37
EG ++T+ C W + GR
Sbjct: 148 VDEGNDITMTCPCTDCANANVTWYTGPTFFENYETGTYQPLANKNQFGITWFSSEIAGRA 207
Query: 38 KIFENGNLLISPVSRDDSGIYSCTATNVHGMDESKGRLIVLH 79
NL+I D+G C G ++ +L
Sbjct: 208 SFSGARNLVIRAAKITDAGRVWCELATGQGELDADRSSTILK 249
Score = 36.4 bits (83), Expect = 0.019
Identities = 22/144 (15%), Positives = 41/144 (28%), Gaps = 36/144 (25%)
Query: 85 EQLPPKITIAAHRNLQLRCSAHT--------------------EELLDVAYIWTHNGVRI 124
++ + A ++L CS ++ Y W G+
Sbjct: 6 RTTHTEVEVHAGGTVELPCSYQLANDTQPPVISWLKGASPDRSTKVFKGNYNWQGEGLGF 65
Query: 125 GNMDLNELETPN-------INIDGGLLEITNASFADAGEYECVV-----KSTVGKISTKT 172
D + + N+ L +T+ D G Y C V ++ G +
Sbjct: 66 VESDSYKESFGDFLGRASVANLAAPTLRLTHVHPQDGGRYWCQVAQWSIRTEFGLDAKSV 125
Query: 173 TVIVEG----PPGLPGGVQVVEVH 192
+ V G +VV+V
Sbjct: 126 VLKVTGHTPSNNVHVSTAEVVQVD 149
>2ocw_A Polymeric-immunoglobulin receptor; SC, secretory, antibody,
immunity, immune system; NMR {Homo sapiens} PDB: 3chn_S
3cm9_S 3chn_J 3cm9_J
Length = 585
Score = 75.4 bits (184), Expect = 2e-14
Identities = 32/222 (14%), Positives = 62/222 (27%), Gaps = 25/222 (11%)
Query: 2 AGEGGNVTIFCNPEAAPKPKFVWKKDGNII-GSGGRRKIFENGN-----LLISPVSRDDS 55
C + V G GR + ++I+ + ++D+
Sbjct: 243 PEVANVAKFLCRQSSGENCDVVVNTLGKRAPAFEGRILLNPQDKDGSFSVVITGLRKEDA 302
Query: 56 GIYSCTATNVHGMDESKGRLIVLH---GPSYYEQLPPKITIAAHRNLQLRCSAHTEELLD 112
G Y C A + + E S + P + A ++ + C + +E
Sbjct: 303 GRYLCGAHSDGQLQEGSPIQAWQLFVNEESTIPRSPTVVKGVAGSSVAVLCPYNRKESKS 362
Query: 113 VAYIWTHNGVRIGNMDLNELET---------------PNINIDGGLLEITNASFADAGEY 157
+ Y W +++ + + + DAG Y
Sbjct: 363 IKY-WCLWEGAQNGRCPLLVDSEGWVKAQYEGRLSLLEEPGNGTFTVILNQLTSRDAGFY 421
Query: 158 ECVVKSTVGKISTKTTVIVEGPPGLPGGVQVVEVHKTSATIQ 199
C+ +T I+EG P L V V + +
Sbjct: 422 WCLTNGDTLWRTTVEIKIIEGEPNLKVPGNVTAVLGETLKVP 463
Score = 72.0 bits (175), Expect = 2e-13
Identities = 37/193 (19%), Positives = 58/193 (30%), Gaps = 30/193 (15%)
Query: 2 AGEGGNVTIFCNPEAA--PKPKFVWKKDGNII------------GSGGRRKIFENG---- 43
G VTI C + K K ++K+ G GR ++ G
Sbjct: 124 VDLGRTVTINCPFKTENAQKRKSLYKQIGLYPVLVIDSSGYVNPNYTGRIRLDIQGTGQL 183
Query: 44 --NLLISPVSRDDSGIYSCTATNVHGMDESKGRLIVLHGPSYYEQ--------LPPKITI 93
+++I+ + D+G Y C A + ++ L VL +
Sbjct: 184 LFSVVINQLRLSDAGQYLCQAGDDSNSNKKNADLQVLKPEPELVYEDLRGSVTFHCALGP 243
Query: 94 AAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEITNASFAD 153
+ C + E DV + G R + L P + IT D
Sbjct: 244 EVANVAKFLCRQSSGENCDV--VVNTLGKRAPAFEGRILLNPQDKDGSFSVVITGLRKED 301
Query: 154 AGEYECVVKSTVG 166
AG Y C S
Sbjct: 302 AGRYLCGAHSDGQ 314
Score = 71.6 bits (174), Expect = 3e-13
Identities = 35/226 (15%), Positives = 65/226 (28%), Gaps = 34/226 (15%)
Query: 4 EGGNVTIFCNPEAAPKPKFVW--KKDGNIIGSG---------------GRRKIFENGN-- 44
G +V + C + +G G GR + E
Sbjct: 345 AGSSVAVLCPYNRKESKSIKYWCLWEGAQNGRCPLLVDSEGWVKAQYEGRLSLLEEPGNG 404
Query: 45 ---LLISPVSRDDSGIYSCTATNVHGMDESKGRLIVLHGPSYYEQLPPKITIAAHRNLQL 101
++++ ++ D+G Y C + I + ++P +T L++
Sbjct: 405 TFTVILNQLTSRDAGFYWCLTNGDTLWRTTVE--IKIIEGEPNLKVPGNVTAVLGETLKV 462
Query: 102 RCSAHTEELLDVAY--IWTHNGVRIGNMDLNELETPNINIDGGL----LEITNASFADAG 155
C + Y W + G + +N D L + + AD G
Sbjct: 463 PCHFPCKFSSYEKYWCKWNNTGCQALPSQDEGPSKAFVNCDENSRLVSLTLNLVTRADEG 522
Query: 156 EYECVVKS-TVGKISTKTTVIV-EGPPGLPGGVQVVEVHKTSATIQ 199
Y C VK + V V E V + + +A +
Sbjct: 523 WYWCGVKQGHFYGETAAVYVAVEERKAAGSRDVSLAKA--DAAPDE 566
Score = 65.8 bits (159), Expect = 2e-11
Identities = 38/219 (17%), Positives = 64/219 (29%), Gaps = 35/219 (15%)
Query: 4 EGGNVTIFCNPEAA---PKPKFVWKKDGNIIG--------------SGGRRKIFENGN-- 44
EG +V+I C + W + G G GR +
Sbjct: 14 EGNSVSITCYYPPTSVNRHTRKYWCRQGARGGCITLISSEGYVSSKYAGRANLTNFPENG 73
Query: 45 ---LLISPVSRDDSGIYSCTATNVHGMDESKGRLIVLHGPSYYEQLPPKITIAAHRNLQL 101
+ I+ +S+DDSG Y C S + + T+ R + +
Sbjct: 74 TFVVNIAQLSQDDSGRYKCGLGINSR-GLSFDVSLEVSQGPGLLNDTKVYTVDLGRTVTI 132
Query: 102 RCSAHTEELLDVAYIWTHNGVRIGNM-DLNELETPN------INIDGG-----LLEITNA 149
C TE ++ G+ + D + PN ++I G + I
Sbjct: 133 NCPFKTENAQKRKSLYKQIGLYPVLVIDSSGYVNPNYTGRIRLDIQGTGQLLFSVVINQL 192
Query: 150 SFADAGEYECVVKSTVGKISTKTTVIVEGPPGLPGGVQV 188
+DAG+Y C + V P +
Sbjct: 193 RLSDAGQYLCQAGDDSNSNKKNADLQVLKPEPELVYEDL 231
Score = 48.5 bits (114), Expect = 5e-06
Identities = 17/96 (17%), Positives = 28/96 (29%), Gaps = 15/96 (15%)
Query: 2 AGEGGNVTIFCNPEAA----PKPKFVWKKDGNII------GSGGRRKIFENGN----LLI 47
A G + + C+ K W G G + + L +
Sbjct: 454 AVLGETLKVPCHFPCKFSSYEKYWCKWNNTGCQALPSQDEGPSKAFVNCDENSRLVSLTL 513
Query: 48 SPVSRDDSGIYSCTATNVHGMDES-KGRLIVLHGPS 82
+ V+R D G Y C H E+ + V +
Sbjct: 514 NLVTRADEGWYWCGVKQGHFYGETAAVYVAVEERKA 549
Score = 35.0 bits (79), Expect = 0.082
Identities = 14/71 (19%), Positives = 23/71 (32%)
Query: 143 LLEITNASFADAGEYECVVKSTVGKISTKTTVIVEGPPGLPGGVQVVEVHKTSATIQWTD 202
++ I S D+G Y+C + +S ++ V PGL +V V
Sbjct: 76 VVNIAQLSQDDSGRYKCGLGINSRGLSFDVSLEVSQGPGLLNDTKVYTVDLGRTVTINCP 135
Query: 203 GATNGRPITHY 213
T
Sbjct: 136 FKTENAQKRKS 146
>2djs_A Ephrin type-B receptor 1; tyrosine-protein kinase receptor EPH-2,
NET, HEK6, ELK, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: b.1.2.1
Length = 108
Score = 68.2 bits (167), Expect = 2e-14
Identities = 27/115 (23%), Positives = 49/115 (42%), Gaps = 10/115 (8%)
Query: 385 SAEDMPQVAPQGVFSRGFNSTAINVTWNPIELIRENIRGRLIGHRIKYWKEDNPEETAVY 444
S P + +I ++W E G ++ + I+Y+++++ E +
Sbjct: 3 SGSSGPS-TVPIMHQVSATMRSITLSWPQPE----QPNGIILDYEIRYYEKEHNEFNSS- 56
Query: 445 YLSRTTRNWALIVGLQPDTKYYVKVMAYNNAGEGPESERYLERTYRKAPQKPPSA 499
++R+ N A I GL+P Y V+V A AG G S + +T PS+
Sbjct: 57 -MARSQTNTARIDGLRPGMVYVVQVRARTVAGYGKFSGKMCFQT---LTDSGPSS 107
Score = 60.2 bits (146), Expect = 2e-11
Identities = 21/95 (22%), Positives = 39/95 (41%), Gaps = 6/95 (6%)
Query: 496 PPSAVHIKGINPTTVHVTWRYVSPSFEEEPIIGYKVRVWEVDQDMSRANDTIIPVGNTLD 555
+H ++ ++W P I+ Y++R +E + + ++ T
Sbjct: 10 TVPIMHQVSATMRSITLSWP--QPEQPNGIILDYEIRYYEKEHNEFNSSMA---RSQTNT 64
Query: 556 ADIVDLSPGKRYHMRVLAFSNGGDGRMSSPAITFQ 590
A I L PG Y ++V A + G G+ S + FQ
Sbjct: 65 ARIDGLRPGMVYVVQVRARTVAGYGKFSGK-MCFQ 98
Score = 55.5 bits (134), Expect = 8e-10
Identities = 19/100 (19%), Positives = 30/100 (30%), Gaps = 10/100 (10%)
Query: 177 EGPPGLPGGVQVVEVHKTSATIQWTDGATNGRPITHYKIIARTNWNSTWFNVSEHVIGKE 236
P + V S T+ W I Y+I ++ + +
Sbjct: 5 SSGPSTVPIMHQVSATMRSITLSWPQPEQPNGIILDYEIRYYEKEHNEFNSSM------- 57
Query: 237 VDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSP 276
+ A I+ L P Y +V A GYG+ S
Sbjct: 58 --ARSQTNTARIDG-LRPGMVYVVQVRARTVAGYGKFSGK 94
Score = 47.4 bits (113), Expect = 5e-07
Identities = 21/89 (23%), Positives = 35/89 (39%), Gaps = 10/89 (11%)
Query: 304 LSISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETLKEYGNVGIAVVR--IPSEFYYTE 361
+++SW P E+ N + Y+I + +K EF S + A + P
Sbjct: 24 ITLSWPQ-P-EQPNGIILDYEIRYYEKEHNEFNSSMAR--SQTNTARIDGLRP----GMV 75
Query: 362 YEVKVQAINDVGPGPESEVVTIFSAEDMP 390
Y V+V+A G G S + + D
Sbjct: 76 YVVQVRARTVAGYGKFSGKMCFQTLTDSG 104
>2cr6_A KIAA1556 protein, obscurin; IG-fold, immunoglobulin domain,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 115
Score = 68.6 bits (168), Expect = 3e-14
Identities = 19/90 (21%), Positives = 29/90 (32%), Gaps = 8/90 (8%)
Query: 4 EGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGN----LLISPVSRDDSGIYS 59
EG + T C A W D + + +I L + ++ DSG
Sbjct: 27 EGSSATFRCRISPANYEPVHWFLDKTPLHANELNEIDAQPGGYHVLTLRQLALKDSGTIY 86
Query: 60 CTATNVHGMDESKGRLIVLHGPSYYEQLPP 89
A G + L V PS + + P
Sbjct: 87 FEA----GDQRASAALRVTEKPSVFSRSGP 112
Score = 49.7 bits (119), Expect = 1e-07
Identities = 17/112 (15%), Positives = 32/112 (28%), Gaps = 12/112 (10%)
Query: 71 SKGRLIVLHGPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLN 130
S +V + + + + + RC V W + + +LN
Sbjct: 3 SGSSGLVQGRRVHIIEDLEDVDVQEGSSATFRCRISPANYEPVH--WFLDKTPLHANELN 60
Query: 131 ELETPNINIDGGL--LEITNASFADAGEYECVVKSTVGKISTKTTVIVEGPP 180
E++ GG L + + D+G G + V P
Sbjct: 61 EIDAQ----PGGYHVLTLRQLALKDSGTIYFE----AGDQRASAALRVTEKP 104
>1x5i_A Neogenin; RGM binding, fibronectin type III domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
b.1.2.1
Length = 126
Score = 68.6 bits (168), Expect = 4e-14
Identities = 31/135 (22%), Positives = 49/135 (36%), Gaps = 15/135 (11%)
Query: 370 NDVGPGPESEVVTIFSAEDMPQV-----APQGVFSRGFNSTAINVTWNPIELIRENIRGR 424
+ GP ++ ++ + E P + R T+I V+W P E N
Sbjct: 2 SSGSSGPATDWLSAETFESDLDETRVPEVPSSLHVR-PLVTSIVVSWTPPE----NQNIV 56
Query: 425 LIGHRIKYWKEDNPEETAVYYLSRTTRNWALIVGLQPDTKYYVKVMAYNNAGEGPESERY 484
+ G+ I Y +T + R + I L P + Y + + A+NN GEG Y
Sbjct: 57 VRGYAIGYGIGSPHAQTIK--VDYKQRYY-TIENLDPSSHYVITLKAFNNVGEGIPL--Y 111
Query: 485 LERTYRKAPQKPPSA 499
R P S
Sbjct: 112 ESAVTRPHTSGPSSG 126
Score = 61.3 bits (149), Expect = 1e-11
Identities = 22/120 (18%), Positives = 41/120 (34%), Gaps = 10/120 (8%)
Query: 473 NNAGEGPESERYLERTYRKAP--QKPPSAVHIKGINP--TTVHVTWRYVSPSFEEEPIIG 528
++ GP ++ T+ + P + P T++ V+W P + + G
Sbjct: 2 SSGSSGPATDWLSAETFESDLDETRVPEVPSSLHVRPLVTSIVVSWT--PPENQNIVVRG 59
Query: 529 YKVRVWEVDQDMSRANDTIIPVGNTLDADIVDLSPGKRYHMRVLAFSNGGDGRMSSPAIT 588
Y + TI I +L P Y + + AF+N G+G +
Sbjct: 60 YAIGYGIGSPHA----QTIKVDYKQRYYTIENLDPSSHYVITLKAFNNVGEGIPLYESAV 115
Score = 55.5 bits (134), Expect = 1e-09
Identities = 29/126 (23%), Positives = 42/126 (33%), Gaps = 13/126 (10%)
Query: 163 STVGKISTKTTVIVEG-PPGLPGGVQVVEVHKTSATIQWTDGATNGRPITHYKIIARTNW 221
+ T + + E P +P + V TS + WT + Y I
Sbjct: 10 TDWLSAETFESDLDETRVPEVPSSLHV-RPLVTSIVVSWTPPENQNIVVRGYAI------ 62
Query: 222 NSTWFNVSEHVIGKEVDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPSPQYN 281
+ S H +VD + +IEN L P S Y + A N +G G P S
Sbjct: 63 --GYGIGSPHAQTIKVDYKQ--RYYTIEN-LDPSSHYVITLKAFNNVGEGIPLYESAVTR 117
Query: 282 TPADKP 287
P
Sbjct: 118 PHTSGP 123
Score = 44.8 bits (106), Expect = 8e-06
Identities = 28/138 (20%), Positives = 45/138 (32%), Gaps = 27/138 (19%)
Query: 265 GNELGYGEPSSPSPQYNTPADKPYQ-----APSRIGGGGGKIGDLS----ISWEPLPREK 315
G+ G P++ T + PS + + L +SW P P E
Sbjct: 1 GSSGSSG-PATDWLSAETFESDLDETRVPEVPSSL-----HVRPLVTSIVVSWTP-P-EN 52
Query: 316 QNAPNIYYKIFWRKKNDTEFQSETLKEYGNVGIAVVR--IPSEFYYTEYEVKVQAINDVG 373
QN Y I + + +T+K + P + Y + ++A N+VG
Sbjct: 53 QNIVVRGYAIGYGIGSPHA---QTIKVDYKQRYYTIENLDP----SSHYVITLKAFNNVG 105
Query: 374 PG-PESEVVTIFSAEDMP 390
G P E P
Sbjct: 106 EGIPLYESAVTRPHTSGP 123
>1x5l_A Ephrin type-A receptor 8; FN3 domain, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: b.1.2.1
Length = 111
Score = 67.8 bits (166), Expect = 5e-14
Identities = 28/119 (23%), Positives = 51/119 (42%), Gaps = 9/119 (7%)
Query: 381 VTIFSAEDMPQVAPQGVFSRGFNSTAINVTWNPIELIRENIRGRLIGHRIKYWKEDNPEE 440
+ S + P + T++++ W E + N G ++ + IKY+++D +
Sbjct: 2 SSGSSGQAAPS-QVVVIRQERAGQTSVSLLWQEPE--QPN--GIILEYEIKYYEKDKEMQ 56
Query: 441 TAVYYLSRTTRNWALIVGLQPDTKYYVKVMAYNNAGEGPESERYLERTYRKAPQKPPSA 499
+ Y + A + GL+P T+Y +V A +AG G S+ T P P S
Sbjct: 57 S--YSTLKAVTTRATVSGLKPGTRYVFQVRARTSAGCGRFSQAMEVET--GKPSGPSSG 111
Score = 62.4 bits (152), Expect = 3e-12
Identities = 25/104 (24%), Positives = 46/104 (44%), Gaps = 7/104 (6%)
Query: 487 RTYRKAPQKPPSAVHIKGINPTTVHVTWRYVSPSFEEEPIIGYKVRVWEVDQDMSRANDT 546
+ + AP + + T+V + W+ P I+ Y+++ +E D++M +
Sbjct: 5 SSGQAAPS-QVVVIRQERAGQTSVSLLWQ--EPEQPNGIILEYEIKYYEKDKEMQSYSTL 61
Query: 547 IIPVGNTLDADIVDLSPGKRYHMRVLAFSNGGDGRMSSPAITFQ 590
T A + L PG RY +V A ++ G GR S A+ +
Sbjct: 62 ---KAVTTRATVSGLKPGTRYVFQVRARTSAGCGR-FSQAMEVE 101
Score = 53.1 bits (128), Expect = 6e-09
Identities = 20/101 (19%), Positives = 34/101 (33%), Gaps = 12/101 (11%)
Query: 177 EGPPGLPGGVQVVEVHKTSATIQWTD-GATNGRPITHYKIIARTNWNSTWFNVSEHVIGK 235
+ P ++ +TS ++ W + NG I Y+I + + S
Sbjct: 8 QAAPSQVVVIRQERAGQTSVSLLWQEPEQPNG-IILEYEIKYYEK-DKEMQSYS------ 59
Query: 236 EVDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSP 276
A++ L P + Y F+V A G G S
Sbjct: 60 --TLKAVTTRATVSG-LKPGTRYVFQVRARTSAGCGRFSQA 97
Score = 44.7 bits (106), Expect = 5e-06
Identities = 23/104 (22%), Positives = 38/104 (36%), Gaps = 11/104 (10%)
Query: 282 TPADKPYQAPSRIGGGGGKIGDLSISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETLK 341
+ P I +S+ W+ P E+ N + Y+I + +K+ TLK
Sbjct: 6 SGQAAP-SQVVVIRQERAGQTSVSLLWQE-P-EQPNGIILEYEIKYYEKDKEMQSYSTLK 62
Query: 342 EYGNVGIAVVR--IPSEFYYTEYEVKVQAINDVGPGPESEVVTI 383
A V P T Y +V+A G G S+ + +
Sbjct: 63 --AVTTRATVSGLKP----GTRYVFQVRARTSAGCGRFSQAMEV 100
>2dm7_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} PDB: 2edl_A
2edw_A 2gqh_A 2edt_A 2edq_A 2edr_A
Length = 108
Score = 67.4 bits (165), Expect = 5e-14
Identities = 27/94 (28%), Positives = 38/94 (40%), Gaps = 16/94 (17%)
Query: 2 AGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGN---LLISPVSRDDSGIY 58
A EG T+ C E + WKK + GGR + ++G L I +S D+G Y
Sbjct: 20 ASEGATATLQC--ELSKVAPVEWKKGPETLRDGGRYSLKQDGTRCELQIHDLSVADAGEY 77
Query: 59 SCTATNVHGMDESKGRLIVLHGPSYYEQLPPKIT 92
SC G + + L V LP + T
Sbjct: 78 SCMC----GQERTSATLTV-------RALPARFT 100
Score = 46.2 bits (110), Expect = 1e-06
Identities = 18/68 (26%), Positives = 27/68 (39%), Gaps = 15/68 (22%)
Query: 117 WTHNGVRIGNMDLNELETPNINI--DGGL--LEITNASFADAGEYECVVKSTVGKISTKT 172
W + + ++ DG L+I + S ADAGEY C+ G+ T
Sbjct: 40 WKKGPETLR-------DGGRYSLKQDGTRCELQIHDLSVADAGEYSCM----CGQERTSA 88
Query: 173 TVIVEGPP 180
T+ V P
Sbjct: 89 TLTVRALP 96
>2cry_A KIN of IRRE-like protein 3; IG fold, KIN of irregular chiasm-like
protein 3, nephrin- like 2, structural genomics, NPPSFA;
NMR {Homo sapiens} SCOP: b.1.1.1
Length = 122
Score = 68.0 bits (166), Expect = 6e-14
Identities = 26/88 (29%), Positives = 35/88 (39%), Gaps = 11/88 (12%)
Query: 1 YAGEGGNVTIFCNPEAAPKPKFV-WKKDGNII--GSGGRRKIFENGN-------LLISPV 50
+A G I C + P P + W N++ G+ GR + L IS +
Sbjct: 24 HALHGEKGQIKCFIRSTPPPDRIAWSWKENVLESGTSGRYTVETISTEEGVISTLTISNI 83
Query: 51 SR-DDSGIYSCTATNVHGMDESKGRLIV 77
R D IY+CTA N G D RL
Sbjct: 84 VRADFQTIYNCTAWNSFGSDTEIIRLKE 111
Score = 45.3 bits (107), Expect = 4e-06
Identities = 21/118 (17%), Positives = 36/118 (30%), Gaps = 7/118 (5%)
Query: 67 GMDESKGRLIVLHGPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGN 126
G S G L V P Q++C + D W+ + +
Sbjct: 1 GSSGSSGTLTVNGPPII--SSTQTQHALHGEKGQIKCFIRSTPPPD-RIAWSWKENVLES 57
Query: 127 MDLNELETPNINIDGGL---LEITNASFAD-AGEYECVVKSTVGKISTKTTVIVEGPP 180
I+ + G+ L I+N AD Y C ++ G + + +G
Sbjct: 58 GTSGRYTVETISTEEGVISTLTISNIVRADFQTIYNCTAWNSFGSDTEIIRLKEQGSE 115
>2edb_A Netrin receptor DCC; tumor suppressor protein DCC, colorectal
cancer suppressor, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 116
Score = 67.5 bits (165), Expect = 7e-14
Identities = 29/127 (22%), Positives = 42/127 (33%), Gaps = 11/127 (8%)
Query: 373 GPGPESEVVTIFSAEDMPQVAPQGVFSRGFNSTAINVTWNPIELIRENIRGRLIGHRIKY 432
G S +P P + R + I ++W P N + G+ I Y
Sbjct: 1 GSSGSSGPENDLDESQVPD-QPSSLHVR-PQTNCIIMSWTPPL----NPNIVVRGYIIGY 54
Query: 433 WKEDNPEETAVYYLSRTTRNWALIVGLQPDTKYYVKVMAYNNAGEGPESERYLERTYRKA 492
ET + I L+ + Y + + A+NNAGEG Y T R
Sbjct: 55 GVGSPYAETVRVDSKQRY---YSIERLESSSHYVISLKAFNNAGEGVPL--YESATTRSI 109
Query: 493 PQKPPSA 499
P S
Sbjct: 110 TSGPSSG 116
Score = 57.1 bits (138), Expect = 3e-10
Identities = 20/111 (18%), Positives = 29/111 (26%), Gaps = 12/111 (10%)
Query: 177 EGPPGLPGGVQVVEVHKTSATIQWTDGATNGRPITHYKIIARTNWNSTWFNVSEHVIGKE 236
P P + V + WT + Y I + + +
Sbjct: 15 SQVPDQPSSLHV-RPQTNCIIMSWTPPLNPNIVVRGYII----GYGVGSPYAETVRVDSK 69
Query: 237 VDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPSPQYNTPADKP 287
Y+ IE L S Y + A N G G P S + P
Sbjct: 70 QRYYS------IER-LESSSHYVISLKAFNNAGEGVPLYESATTRSITSGP 113
Score = 52.4 bits (126), Expect = 1e-08
Identities = 18/115 (15%), Positives = 33/115 (28%), Gaps = 12/115 (10%)
Query: 476 GEGPESERYLERTYRKAPQKPPSAVHIKGINP--TTVHVTWRYVSPSFEEEPIIGYKVRV 533
G S + + P + P + ++W P + GY +
Sbjct: 1 GSSGSSGPENDLD----ESQVPDQPSSLHVRPQTNCIIMSWT--PPLNPNIVVRGYIIGY 54
Query: 534 WEVDQDMSRANDTIIPVGNTLDADIVDLSPGKRYHMRVLAFSNGGDGRMSSPAIT 588
+T+ I L Y + + AF+N G+G + T
Sbjct: 55 GVGSPYA----ETVRVDSKQRYYSIERLESSSHYVISLKAFNNAGEGVPLYESAT 105
Score = 40.1 bits (94), Expect = 2e-04
Identities = 25/132 (18%), Positives = 40/132 (30%), Gaps = 23/132 (17%)
Query: 269 GYGEPSSPSPQYNTPADKPYQAPSRIGGGGGKIGDLS----ISWEPLPREKQNAPNIYYK 324
G S P + P PS + + + +SW P P N Y
Sbjct: 1 GSSGSSGPE-NDLDESQVP-DQPSSL-----HVRPQTNCIIMSWTP-PLN-PNIVVRGYI 51
Query: 325 IFWRKKNDTEFQSETLKEYGNVGIAVVR--IPSEFYYTEYEVKVQAINDVGPG-PESEVV 381
I + + ET++ + + Y + ++A N+ G G P E
Sbjct: 52 IGYGVGSPYA---ETVRVDSKQRYYSIERLES----SSHYVISLKAFNNAGEGVPLYESA 104
Query: 382 TIFSAEDMPQVA 393
T S P
Sbjct: 105 TTRSITSGPSSG 116
>1x5a_A Ephrin type-A receptor 1; tyrosine-protein kinase receptor, ESK,
fibronectin type III (FN3) domain, structural genomics,
NPPSFA; NMR {Mus musculus} SCOP: b.1.2.1
Length = 107
Score = 66.7 bits (163), Expect = 9e-14
Identities = 22/109 (20%), Positives = 34/109 (31%), Gaps = 11/109 (10%)
Query: 390 PQVAPQGVFSRGFNSTAINVTWNPIELIRENIRGRLIGHRIKYWKEDNPEETAVYYLSRT 449
++ + + +TW G + + + +D
Sbjct: 9 ESLSGLSLKLVKKEPRQLELTWAGSRP---RNPGGNLSYELHVLNQDEEWH------QMV 59
Query: 450 TRNWALIVGLQPDTKYYVKVMAYNNAGEGPESERYLERTYRKAPQKPPS 498
L+ LQPDT Y V+V G GP S + RT P P S
Sbjct: 60 LEPRVLLTKLQPDTTYIVRVRTLTPLGPGPFSPDHEFRT--SPPSGPSS 106
Score = 52.5 bits (126), Expect = 8e-09
Identities = 19/101 (18%), Positives = 36/101 (35%), Gaps = 13/101 (12%)
Query: 492 APQKPPSAVHIKGINPTTVHVTWRYVSPSFEEEP--IIGYKVRVWEVDQDMSRANDTIIP 549
A ++ + P + +TW + S P + Y++ V D++ +
Sbjct: 8 AESLSGLSLKLVKKEPRQLELTW---AGSRPRNPGGNLSYELHVLNQDEEWHQ------- 57
Query: 550 VGNTLDADIVDLSPGKRYHMRVLAFSNGGDGRMSSPAITFQ 590
+ + L P Y +RV + G G SP F+
Sbjct: 58 MVLEPRVLLTKLQPDTTYIVRVRTLTPLGPGPF-SPDHEFR 97
Score = 44.8 bits (106), Expect = 4e-06
Identities = 15/80 (18%), Positives = 28/80 (35%), Gaps = 9/80 (11%)
Query: 304 LSISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETLKEYGNVGIAVVRIPSEFYYTEYE 363
L ++W N+ Y++ +++ Q + P T Y
Sbjct: 26 LELTWAGSRPRNPG-GNLSYELHVLNQDEEWHQMVLEPRVLLTKLQ----P----DTTYI 76
Query: 364 VKVQAINDVGPGPESEVVTI 383
V+V+ + +GPGP S
Sbjct: 77 VRVRTLTPLGPGPFSPDHEF 96
Score = 40.2 bits (94), Expect = 2e-04
Identities = 19/112 (16%), Positives = 33/112 (29%), Gaps = 17/112 (15%)
Query: 176 VEGPPGLPG-GVQVVEVHKTSATIQWTDGATNGR-PITHYKIIARTNWNSTWFNVSEHVI 233
G L G +++V+ + W Y++
Sbjct: 5 SSGAESLSGLSLKLVKKEPRQLELTWAGSRPRNPGGNLSYELHVLNQ------------- 51
Query: 234 GKEVDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPSPQYNTPAD 285
+E + + L P +TY +V LG G P SP ++ T
Sbjct: 52 DEEWHQMVLEPRVLLTK-LQPDTTYIVRVRTLTPLGPG-PFSPDHEFRTSPP 101
>2yuv_A Myosin-binding protein C, SLOW-type; SLOW-type myosin-binding
protein C, immunoglobulin domain, structural genomics,
NPPSFA; NMR {Homo sapiens} PDB: 2yxm_A
Length = 100
Score = 66.6 bits (163), Expect = 9e-14
Identities = 23/82 (28%), Positives = 30/82 (36%), Gaps = 8/82 (9%)
Query: 4 EGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGN---LLISPVSRDDSGIYSC 60
+GG V A PK + W K+G I + G L I+ D Y
Sbjct: 22 KGGRVRFVVEL-ADPKLEVKWYKNGQEIRPSTKYIFEHKGCQRILFINNCQMTDDSEYYV 80
Query: 61 TATNVHGMDESKGRLIVLHGPS 82
TA G ++ L V GPS
Sbjct: 81 TA----GDEKCSTELFVRSGPS 98
Score = 52.4 bits (126), Expect = 7e-09
Identities = 18/105 (17%), Positives = 27/105 (25%), Gaps = 18/105 (17%)
Query: 80 GPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINI 139
G ++ + L P + ++ + W NG I +
Sbjct: 7 GAAFAKILDPAYQVDKGGRVRFVVELADP---KLEVKWYKNGQEIR-------PSTKYIF 56
Query: 140 --DGGL--LEITNASFADAGEYECVVKSTVGKISTKTTVIVEGPP 180
G L I N D EY G T + V P
Sbjct: 57 EHKGCQRILFINNCQMTDDSEYYVT----AGDEKCSTELFVRSGP 97
>3bfo_A Mucosa-associated lymphoid tissue lymphoma translocation protein
1 (isoform 2); hydrolase, immunoglobulin domain,
nucleus, protease; 1.15A {Homo sapiens}
Length = 91
Score = 65.8 bits (161), Expect = 1e-13
Identities = 14/79 (17%), Positives = 29/79 (36%), Gaps = 6/79 (7%)
Query: 4 EGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTAT 63
G + + C +P P + W K+ + ++ ++ V + G Y C
Sbjct: 17 PGSTLVLQCVAVGSPIPHYQWFKNELPLTHETKKL------YMVPYVDLEHQGTYWCHVY 70
Query: 64 NVHGMDESKGRLIVLHGPS 82
N +SK I++ +
Sbjct: 71 NDRDSQDSKKVEIIIDELN 89
Score = 48.5 bits (116), Expect = 1e-07
Identities = 17/103 (16%), Positives = 29/103 (28%), Gaps = 22/103 (21%)
Query: 88 PPKITI-------AAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINID 140
+I + L L+C A + Y W N + + +
Sbjct: 3 KLQICVEPTSQKLMPGSTLVLQCVAVGSPIPH--YQWFKNELPLTHET------------ 48
Query: 141 GGLLEITNASFADAGEYECVVKSTVGKI-STKTTVIVEGPPGL 182
L + G Y C V + S K +I++ L
Sbjct: 49 KKLYMVPYVDLEHQGTYWCHVYNDRDSQDSKKVEIIIDELNNL 91
>2if7_A SLAM family member 6; NTB-A, homophilic receptor, immune system;
3.00A {Homo sapiens}
Length = 193
Score = 68.9 bits (168), Expect = 1e-13
Identities = 30/191 (15%), Positives = 62/191 (32%), Gaps = 34/191 (17%)
Query: 4 EGGNVTIFCNPEAAPKPKFV-WKKDGNII------------------GSGGRRKIFENGN 44
G +VT+ A K F+ W + + G R ++ +
Sbjct: 12 LGESVTLPLEFPAGEKVNFITWLFNETSLAFIVPHETKSPEIHVTNPKQGKRLNFTQSYS 71
Query: 45 LLISPVSRDDSGIYSCTATNVHGMDESKGRLIVLHGPSYYE-QLPPKITIAAHRNLQLRC 103
L +S + +D+G Y + S L +L + ++ L L C
Sbjct: 72 LQLSNLKMEDTGSYRAQISTKTSAKLSSYTLRILRQLRNIQVTNHSQLFQNMTCELHLTC 131
Query: 104 SAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEITNASFADAGEYECVVKS 163
S + +V++ W G + PN+ + + + +Y C+ ++
Sbjct: 132 SVEDAD-DNVSFRWEALGNTL-------SSQPNLTV------SWDPRISSEQDYTCIAEN 177
Query: 164 TVGKISTKTTV 174
V +S +
Sbjct: 178 AVSNLSFSVSA 188
Score = 35.0 bits (80), Expect = 0.035
Identities = 14/108 (12%), Positives = 34/108 (31%), Gaps = 13/108 (12%)
Query: 88 PPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDG------ 141
P + ++ L E ++ W N + + +E ++P I++
Sbjct: 5 PLMVNGILGESVTLPLEFPAGEKVN-FITWLFNETSLAFIVPHETKSPEIHVTNPKQGKR 63
Query: 142 ------GLLEITNASFADAGEYECVVKSTVGKISTKTTVIVEGPPGLP 183
L+++N D G Y + + + T+ +
Sbjct: 64 LNFTQSYSLQLSNLKMEDTGSYRAQISTKTSAKLSSYTLRILRQLRNI 111
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4
complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB:
3zyo_A* 3zyn_A* 2dl9_A
Length = 452
Score = 72.1 bits (177), Expect = 1e-13
Identities = 22/89 (24%), Positives = 33/89 (37%), Gaps = 10/89 (11%)
Query: 4 EGGNVTIFCNPEAAPKPKFVWKKD-GNIIGS---GGRRKIFENGNLLISPVSRDDSGIYS 59
EG + C P W G ++ R + +G L S V D+G+Y+
Sbjct: 366 EGRMAELKCR--TPPMSSVKWLLPNGTVLSHASRHPRISVLNDGTLNFSHVLLSDTGVYT 423
Query: 60 CTATNVHGMDESKGRLIV----LHGPSYY 84
C TNV G + L V H ++
Sbjct: 424 CMVTNVAGNSNASAYLNVSTAGTHHHHHH 452
Score = 53.2 bits (128), Expect = 1e-07
Identities = 19/97 (19%), Positives = 37/97 (38%), Gaps = 10/97 (10%)
Query: 86 QLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTH-NGVRIGNMDLNELETPNINI-DGGL 143
P + I+ R +L+C + W NG + + + P I++ + G
Sbjct: 357 DAPRDLNISEGRMAELKCRTPPM----SSVKWLLPNGTVLSHASRH----PRISVLNDGT 408
Query: 144 LEITNASFADAGEYECVVKSTVGKISTKTTVIVEGPP 180
L ++ +D G Y C+V + G + + V
Sbjct: 409 LNFSHVLLSDTGVYTCMVTNVAGNSNASAYLNVSTAG 445
>3t04_D Monobody 7C12; engineered binding protein, antibody mimic,
protein-protein SH2 domain, ATP-binding, phosphoprotein;
2.10A {Homo sapiens}
Length = 103
Score = 65.9 bits (161), Expect = 2e-13
Identities = 19/99 (19%), Positives = 37/99 (37%), Gaps = 4/99 (4%)
Query: 492 APQKPPSAVHIKGINPTTVHVTWRYVSPSFEEEPIIGYKVRVWEVDQDMSRANDTIIPVG 551
+ P+ + + PT++ ++W + + + Y++ E D T+ G
Sbjct: 6 SVSSVPTKLEVVDATPTSLKISWD--AYYSSWQNVKYYRITYGETGGDSPVQEFTV--PG 61
Query: 552 NTLDADIVDLSPGKRYHMRVLAFSNGGDGRMSSPAITFQ 590
A I L PG Y + V A+ G + I+
Sbjct: 62 YYSTATISGLKPGVDYTITVYAYDTFFPGYEPNSPISIN 100
Score = 60.5 bits (147), Expect = 1e-11
Identities = 19/104 (18%), Positives = 35/104 (33%), Gaps = 5/104 (4%)
Query: 387 EDMPQVAPQGVFSRGFNSTAINVTWNPIELIRENIRGRLIGHRIKYWKEDNPEETAVYYL 446
P + T++ ++W+ + + +RI Y + + +
Sbjct: 4 GSSVSSVPTKLEVVDATPTSLKISWDAYY----SSWQNVKYYRITYGETGGDSPVQEFTV 59
Query: 447 SRTTRNWALIVGLQPDTKYYVKVMAYNNAGEGPESERYLERTYR 490
A I GL+P Y + V AY+ G E + YR
Sbjct: 60 PGYYST-ATISGLKPGVDYTITVYAYDTFFPGYEPNSPISINYR 102
Score = 56.7 bits (137), Expect = 3e-10
Identities = 22/106 (20%), Positives = 37/106 (34%), Gaps = 11/106 (10%)
Query: 179 PPGLPGGVQVVEVHKTSATIQWTDGATNGRPITHYKIIARTNWNSTWFNVSEHVIGKEVD 238
+P ++VV+ TS I W ++ + + +Y+I T+ +E
Sbjct: 7 VSSVPTKLEVVDATPTSLKISWDAYYSSWQNVKYYRI--------TYGETGGDSPVQEFT 58
Query: 239 RYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSP--SPQYNT 282
A+I L P Y V A + G + S Y T
Sbjct: 59 VPGYYSTATISG-LKPGVDYTITVYAYDTFFPGYEPNSPISINYRT 103
Score = 40.5 bits (95), Expect = 1e-04
Identities = 18/83 (21%), Positives = 29/83 (34%), Gaps = 10/83 (12%)
Query: 304 LSISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETLKEYGNVGIAVVR--IPSEFYYTE 361
L ISW+ YY+I + + E G A + P +
Sbjct: 24 LKISWDAYYSS--WQNVKYYRITYGETGGDSPVQEFTVP-GYYSTATISGLKP----GVD 76
Query: 362 YEVKVQAINDVGPGPE-SEVVTI 383
Y + V A + PG E + ++I
Sbjct: 77 YTITVYAYDTFFPGYEPNSPISI 99
>2dm4_A Sortilin-related receptor; beta-sandwich, sorting protein-related
receptor containing LDLR class A repeats, sorla; NMR
{Homo sapiens}
Length = 108
Score = 65.9 bits (161), Expect = 2e-13
Identities = 24/117 (20%), Positives = 41/117 (35%), Gaps = 13/117 (11%)
Query: 385 SAEDMPQVAPQGVFSRGFN--STAINVTWNPIELIRENIRGRLIGHRIKYWKEDNPEETA 442
S P AP+ + I W P + G + + ++Y + + +
Sbjct: 3 SGSSGPD-APRNLQLSLPREAEGVIVGHWAP----PIHTHGLIREYIVEYSRSGSKMWAS 57
Query: 443 VYYLSRTTRNWALIVGLQPDTKYYVKVMAYNNAGEGPESERYLERTYRKAPQKPPSA 499
R N+ I L +T Y V+V A + G G S+ T + + P S
Sbjct: 58 Q----RAASNFTEIKNLLVNTLYTVRVAAVTSRGIGNWSDSKSITTIKGSG--PSSG 108
Score = 51.3 bits (123), Expect = 3e-08
Identities = 16/102 (15%), Positives = 27/102 (26%), Gaps = 14/102 (13%)
Query: 177 EGPPGLPGGVQVV--EVHKTSATIQWTDGATNGRPITHYKIIARTNWNSTWFNVSEHVIG 234
P P +Q+ + W I Y + + + W +
Sbjct: 5 SSGPDAPRNLQLSLPREAEGVIVGHWAPPIHTHGLIREYIVEYSRSGSKMWASQR----- 59
Query: 235 KEVDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSP 276
I+N L+ + Y +V A G G S
Sbjct: 60 ------AASNFTEIKN-LLVNTLYTVRVAAVTSRGIGNWSDS 94
Score = 50.5 bits (121), Expect = 4e-08
Identities = 17/100 (17%), Positives = 29/100 (29%), Gaps = 8/100 (8%)
Query: 487 RTYRKAPQKPPS-AVHIKGINPTTVHVTWRYVSPSFEEEPIIGYKVRVWEVDQDMSRAND 545
+ P P + + + + W P I Y V M +
Sbjct: 2 SSGSSGPDAPRNLQLSLPREAEGVIVGHWA--PPIHTHGLIREYIVEYSRSGSKMWASQR 59
Query: 546 TIIPVGNTLDADIVDLSPGKRYHMRVLAFSNGGDGRMSSP 585
+ +I +L Y +RV A ++ G G S
Sbjct: 60 A-----ASNFTEIKNLLVNTLYTVRVAAVTSRGIGNWSDS 94
Score = 48.6 bits (116), Expect = 2e-07
Identities = 17/109 (15%), Positives = 35/109 (32%), Gaps = 7/109 (6%)
Query: 282 TPADKPYQAPSRIGGGGGKIGDLSISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETLK 341
+ + P AP + + + I P + Y + + + + S+
Sbjct: 3 SGSSGP-DAPRNLQLSLPREAEGVIVGHWAPPIHTHGLIREYIVEYSRSGSKMWASQRAA 61
Query: 342 EYGNVGIAVVRIPSEFYYTEYEVKVQAINDVGPGPESEVVTIFSAEDMP 390
I + T Y V+V A+ G G S+ +I + +
Sbjct: 62 S------NFTEIKNLLVNTLYTVRVAAVTSRGIGNWSDSKSITTIKGSG 104
>3s35_X Vascular endothelial growth factor receptor 2; antibody, KDR, VEGF
receptor, cancer, immune system-transfer complex; HET:
NAG; 2.20A {Homo sapiens} PDB: 3s36_X 3s37_X
Length = 122
Score = 65.9 bits (160), Expect = 3e-13
Identities = 21/98 (21%), Positives = 34/98 (34%), Gaps = 5/98 (5%)
Query: 88 PPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNM-----DLNELETPNINIDGG 142
I ++ L L C+A TE + + + W + + + DL +
Sbjct: 15 SHGIELSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLS 74
Query: 143 LLEITNASFADAGEYECVVKSTVGKISTKTTVIVEGPP 180
L I + +D G Y C S + T V V P
Sbjct: 75 TLTIDGVTRSDQGLYTCAASSGLMTKKNSTFVRVHEKP 112
Score = 55.5 bits (133), Expect = 1e-09
Identities = 16/91 (17%), Positives = 28/91 (30%), Gaps = 13/91 (14%)
Query: 4 EGGNVTIFCNPEAAPKPK--FVWKKDGNIIGSG-----------GRRKIFENGNLLISPV 50
G + + C F W+ + G L I V
Sbjct: 22 VGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLSTLTIDGV 81
Query: 51 SRDDSGIYSCTATNVHGMDESKGRLIVLHGP 81
+R D G+Y+C A++ ++ + V P
Sbjct: 82 TRSDQGLYTCAASSGLMTKKNSTFVRVHEKP 112
>3qr2_A Basigin; CD147, EMMPRIN, immunoglobulin-like domain, beta sheet,
STRU genomics, berkeley structural genomics center,
BSGC, cell A; 2.30A {Homo sapiens} PDB: 3qqn_A
Length = 137
Score = 66.2 bits (161), Expect = 3e-13
Identities = 16/90 (17%), Positives = 27/90 (30%), Gaps = 16/90 (17%)
Query: 4 EGGNVTIFCNPEAAPKPKFVWKKDGNIIGSG----------------GRRKIFENGNLLI 47
GG+V + C +P P+ W +G + I
Sbjct: 35 VGGSVELHCEAVGSPVPEIQWWFEGQGPNDICSQLWDGARLDRVHIHATYHQHAASTISI 94
Query: 48 SPVSRDDSGIYSCTATNVHGMDESKGRLIV 77
+ +D+G Y C A+N + V
Sbjct: 95 DTLVEEDTGTYECRASNDPDRNHLTRAPRV 124
Score = 44.6 bits (105), Expect = 1e-05
Identities = 13/100 (13%), Positives = 27/100 (27%), Gaps = 14/100 (14%)
Query: 88 PPKITIAAHRNLQLRCSA-----------HTEELLDVAYIWTHNGVRIGNMDLNELETPN 136
P +++L C A + + +G R+ + ++ +
Sbjct: 28 PLSQQRWVGGSVELHCEAVGSPVPEIQWWFEGQGPNDICSQLWDGARLDRVHIHATYHQH 87
Query: 137 INIDGGLLEITNASFADAGEYECVVKSTVGKISTKTTVIV 176
+ I D G YEC + + V
Sbjct: 88 AA---STISIDTLVEEDTGTYECRASNDPDRNHLTRAPRV 124
>2dru_A Chimera of CD48 antigen and T-cell surface antige; CD2 binding
domain of CD48, immune system; HET: NAG; 2.60A {Rattus
norvegicus}
Length = 180
Score = 67.6 bits (165), Expect = 3e-13
Identities = 31/189 (16%), Positives = 50/189 (26%), Gaps = 42/189 (22%)
Query: 4 EGGNVTIFCNPEAAPKPKFV------------WKKDGNIIGSGGRRK-----IFENGNLL 46
G NVT+ + + + +G K NG L
Sbjct: 13 TGSNVTLTILKHPLASYQRLTWLHTTNQKILEYFPNGKKTVFESVFKDRVDLDKTNGALR 72
Query: 47 ISPVSRDDSGIYSCTATNVHGMDESKGRLIVLHGPSYYEQLP-PKITIAAHRNLQLRCSA 105
I VS++D G Y + D+ K + V YE + P I N L C
Sbjct: 73 IYNVSKEDRGDYYMRMLH-ETEDQWKITMEV------YEMVSKPMIYWEC-SNATLTCEV 124
Query: 106 HTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEITNASFADAGEYECVVKSTV 165
DV + + ++ ++C + V
Sbjct: 125 LEGT--DVELKLYQGKEHLRS--------------LRQKTMSYQWTNLRAPFKCKAVNRV 168
Query: 166 GKISTKTTV 174
+ S V
Sbjct: 169 SQESEMEVV 177
>2crm_A Fibronectin type-III domain containing protein 3A; structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
b.1.2.1
Length = 120
Score = 65.5 bits (160), Expect = 3e-13
Identities = 21/121 (17%), Positives = 32/121 (26%), Gaps = 12/121 (9%)
Query: 169 STKTTVIVEGPPGLPGGVQVV-EVHKTSATIQWTDGATNGR-PITHYKIIARTNWNSTWF 226
PG+P V ++H S I W NG I Y + N +
Sbjct: 7 GVVEFTTCPDKPGIPVKPSVKGKIHSHSFKITWDPPKDNGGATINKYVVEMAEGSNGNKW 66
Query: 227 NVSEHVIGKEVDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPSPQYNTPADK 286
+ +E + L P Y +V ++ G S
Sbjct: 67 EMIYSGATRE---------HLCDR-LNPGCFYRLRVYCISDGGQSAVSESLLVQTPAVSG 116
Query: 287 P 287
P
Sbjct: 117 P 117
Score = 50.1 bits (120), Expect = 9e-08
Identities = 26/111 (23%), Positives = 38/111 (34%), Gaps = 6/111 (5%)
Query: 476 GEGPESERYLERTYRKAPQKPPSAVHIKGINPTTVHVTWRYVSPSFEE-EPIIGYKVRVW 534
G S T P P I+ + +TW P I Y V
Sbjct: 1 GSSGSSGVVEFTTCPDKPGIPVKPSVKGKIHSHSFKITWD--PPKDNGGATINKYVV--- 55
Query: 535 EVDQDMSRANDTIIPVGNTLDADIVDLSPGKRYHMRVLAFSNGGDGRMSSP 585
E+ + + +I G T + L+PG Y +RV S+GG +S
Sbjct: 56 EMAEGSNGNKWEMIYSGATREHLCDRLNPGCFYRLRVYCISDGGQSAVSES 106
Score = 48.2 bits (115), Expect = 4e-07
Identities = 27/127 (21%), Positives = 48/127 (37%), Gaps = 9/127 (7%)
Query: 373 GPGPESEVVTIFSAEDMPQVAPQG-VFSRGFNSTAINVTWNPIELIRENIRGRLIGHRIK 431
G S VV + D P P +S + +TW+P + +N + + ++
Sbjct: 1 GSSGSSGVVEFTTCPDKPG-IPVKPSVKGKIHSHSFKITWDPPK---DNGGATINKYVVE 56
Query: 432 YWKEDNPEETAVYYLSRTTRNWALIVGLQPDTKYYVKVMAYNNAGEGPESERYLERTYRK 491
+ N + + Y T L L P Y ++V ++ G+ SE L +T
Sbjct: 57 MAEGSNGNKWEMIYSGATRE--HLCDRLNPGCFYRLRVYCISDGGQSAVSESLLVQTPAV 114
Query: 492 APQKPPS 498
+ P S
Sbjct: 115 SG--PSS 119
Score = 39.0 bits (91), Expect = 7e-04
Identities = 25/130 (19%), Positives = 45/130 (34%), Gaps = 25/130 (19%)
Query: 273 PSSPSPQYNTPADKPYQAPSRIGGGGGKIGD-LSISWEPLPREKQNAPNIYYKIFWRKKN 331
SS ++ T DKP P + G I+W+P P++ A Y + + +
Sbjct: 4 GSSGVVEFTTCPDKP-GIPVKPSVKGKIHSHSFKITWDP-PKDNGGATINKYVVEMAEGS 61
Query: 332 DTEFQSETLKEYGNVGIAVVRIPSEFY-------YTEYEVKVQAINDVGPGPESEVVTIF 384
+ GN + + + Y ++V I+D G SE + +
Sbjct: 62 N-----------GNKWEMIYSGATREHLCDRLNPGCFYRLRVYCISDGGQSAVSESLLVQ 110
Query: 385 SAEDMPQVAP 394
P V+
Sbjct: 111 ----TPAVSG 116
>2ch8_A BARF1, P33, 33 kDa early protein; viral protein, immunoglobulin
domain, oncogene; HET: NAG MAN; 2.3A {Epstein-barr
virus}
Length = 201
Score = 67.7 bits (165), Expect = 4e-13
Identities = 31/194 (15%), Positives = 49/194 (25%), Gaps = 33/194 (17%)
Query: 2 AGEGGNVTIFCNPE---AAPKPKFVWKKDGN-----IIGS------------GGRRKIFE 41
A G VT+ P+ + W K G +IG G I
Sbjct: 3 AFLGERVTLTSYWRRVSLGPEIEVSWFKLGPGEEQVLIGRMHHDVIFIEWPFRGFFDIHR 62
Query: 42 NGN---LLISPVSRDDSGIYSCTATNVHGMDESKGRLIVLHGPSYYEQLPPKITIAAHRN 98
+ N L+++ + G Y C + L V P +
Sbjct: 63 SANTFFLVVTAANISHDGNYLCRMKLGETEVTKQEHLSV-VKPLTLSVHSERSQFPDFSV 121
Query: 99 LQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINI--DGGL--LEITNASFADA 154
L + C+ + V W G + DG L +
Sbjct: 122 LTVTCTVNAFPHPHV--QWLMPE---GVEPAPTAANGGVMKEKDGSLSVAVDLSLPKPWH 176
Query: 155 GEYECVVKSTVGKI 168
CV K+ +
Sbjct: 177 LPVTCVGKNDKEEA 190
Score = 59.3 bits (143), Expect = 3e-10
Identities = 11/78 (14%), Positives = 24/78 (30%), Gaps = 7/78 (8%)
Query: 1 YAGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGS----GGRRKIFENGNLLIS---PVSRD 53
+ +T+ C A P P W + + G ++G+L ++ + +
Sbjct: 115 QFPDFSVLTVTCTVNAFPHPHVQWLMPEGVEPAPTAANGGVMKEKDGSLSVAVDLSLPKP 174
Query: 54 DSGIYSCTATNVHGMDES 71
+C N
Sbjct: 175 WHLPVTCVGKNDKEEAHG 192
Score = 44.6 bits (105), Expect = 3e-05
Identities = 9/41 (21%), Positives = 19/41 (46%)
Query: 140 DGGLLEITNASFADAGEYECVVKSTVGKISTKTTVIVEGPP 180
+ L +T A+ + G Y C +K +++ + + V P
Sbjct: 65 NTFFLVVTAANISHDGNYLCRMKLGETEVTKQEHLSVVKPL 105
>1waa_A Titin; metal binding protein, calmodulin-binding, cytoskeleton,
immunoglobulin domain, muscle protein, phosphorylation,
repeat; 1.80A {Homo sapiens} PDB: 1waa_E 1waa_F 1tit_A
1tiu_A 2rq8_A
Length = 93
Score = 64.6 bits (158), Expect = 4e-13
Identities = 16/79 (20%), Positives = 24/79 (30%), Gaps = 8/79 (10%)
Query: 2 AGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGN---LLISPVSRDDSGIY 58
G + P WK G + + +I E+G L++ +G
Sbjct: 17 VFVGETAHFEI-ELSEPDVHGQWKLKGQPLAASPDCEIIEDGKKHILILHNCQLGMTGEV 75
Query: 59 SCTATNVHGMDESKGRLIV 77
S A N S L V
Sbjct: 76 SFQAANTK----SAANLKV 90
Score = 41.5 bits (98), Expect = 4e-05
Identities = 13/70 (18%), Positives = 20/70 (28%), Gaps = 15/70 (21%)
Query: 112 DVAYIWTHNGVRIGNMDLNELETPNINI--DGGL--LEITNASFADAGEYECVVKSTVGK 167
DV W G + +P+ I DG L + N GE
Sbjct: 33 DVHGQWKLKGQPLA-------ASPDCEIIEDGKKHILILHNCQLGMTGEVSFQ----AAN 81
Query: 168 ISTKTTVIVE 177
+ + V+
Sbjct: 82 TKSAANLKVK 91
>3bp6_B Programmed cell death 1 ligand 2; PD-1, PD-L2, complex,
costimulation, glycoprotein, immunoglo domain, membrane,
transmembrane, receptor; 1.60A {Mus musculus} PDB:
3bp5_B 3rnq_B 3bov_A 3rnk_B
Length = 202
Score = 67.4 bits (164), Expect = 5e-13
Identities = 30/198 (15%), Positives = 55/198 (27%), Gaps = 35/198 (17%)
Query: 2 AGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSG------GRRKIFE------NGNLLISP 49
G +V++ C+ + + + R + E I
Sbjct: 14 VDVGSSVSLECDFDRRECTELEGIRASLQKVENDTSLQSERATLLEEQLPLGKALFHIPS 73
Query: 50 VSRDDSGIYSCTATNVHGMDESKGRLIVLHGPSYYEQLPPKITIAAHRN-LQLRCSAH-- 106
V DSG Y C D + + + Y ++ +I +QL C A
Sbjct: 74 VQVRDSGQYRCLVICGAAWDYKY---LTVKVKASYMRIDTRILEVPGTGEVQLTCQARGY 130
Query: 107 -TEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEIT---NASFADAGEYECVVK 162
E+ W + V T +I GL ++T + + C+
Sbjct: 131 PLAEV-----SWQNVSV--------PANTSHIRTPEGLYQVTSVLRLKPQPSRNFSCMFW 177
Query: 163 STVGKISTKTTVIVEGPP 180
+ K T +
Sbjct: 178 NAHMKELTSAIIDPLSRM 195
>3n06_B PRL-R, prolactin receptor; PH dependence, hematopoietic cytokine,
hormone-hormone recep complex; 2.00A {Homo sapiens} PDB:
3mzg_B 3n0p_B 3ncb_B 1bp3_B 3d48_R 3nce_B 3ncc_B 3ncf_B
3ew3_B 3npz_B 1f6f_B 2lfg_A
Length = 210
Score = 67.4 bits (164), Expect = 5e-13
Identities = 44/217 (20%), Positives = 73/217 (33%), Gaps = 17/217 (7%)
Query: 179 PPGLPGGVQVVEVHKTSATIQWTDGATNGRPITHYKIIARTNWNSTWFNVSEHVIGKEVD 238
PPG P + +K + T W G G P T+Y + + +++ G
Sbjct: 3 PPGKPEIFKCRSPNKETFTCWWRPGTDGGLP-TNYSLTYHREGETLMHECPDYITGGPNS 61
Query: 239 RYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPS--PQYNTPADKPYQAPSRIGG 296
+ G++ S+ W TY V A N++G Y D P + +
Sbjct: 62 CHFGKQYTSM------WRTYIMMVNATNQMGSSFSDELYVDVTYIVQPDPPLELAVEVKQ 115
Query: 297 GGGKIGDLSISWEP--LPREKQNAPNIYYKIFWRKKNDTEFQSETLKEYGNVGIAVVRIP 354
+ L I W P L K + Y+I + + E++ + +I
Sbjct: 116 PEDRKPYLWIKWSPPTLIDLKTGWFTLLYEIRLKPEKAAEWEIHFAGQQTE-----FKIL 170
Query: 355 SEFYYTEYEVKVQAINDVGPGPE-SEVVTIFSAEDMP 390
S +Y V+V+ D G S I D
Sbjct: 171 SLHPGQKYLVQVRCKPDHGYWSAWSPATFIQIPSDFT 207
Score = 58.9 bits (142), Expect = 5e-10
Identities = 28/178 (15%), Positives = 53/178 (29%), Gaps = 11/178 (6%)
Query: 303 DLSISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETLKEYGNVGIAVVRIPSEFYYTEY 362
+ W P Y + + ++ +T G + Y
Sbjct: 19 TFTCWWRP---GTDGGLPTNYSLTYHREGETLMHECPDYITGGPNSCHFGKQYTSMWRTY 75
Query: 363 EVKVQAINDVGPGPESEVVTIFSAEDMPQVAPQGVFSR----GFNSTAINVTWNPIELIR 418
+ V A N +G S+ + + + P + + + W+P LI
Sbjct: 76 IMMVNATNQMGSS-FSDELYVDVTYIVQPDPPLELAVEVKQPEDRKPYLWIKWSPPTLID 134
Query: 419 ENIRGRLIGHRIKYWKEDNPEETAVYYLSRTTRNWALIVGLQPDTKYYVKVMAYNNAG 476
+ + I+ E E + +T I+ L P KY V+V + G
Sbjct: 135 LKTGWFTLLYEIRLKPEKAAEWEIHFAGQQTEFK---ILSLHPGQKYLVQVRCKPDHG 189
Score = 56.6 bits (136), Expect = 3e-09
Identities = 37/211 (17%), Positives = 59/211 (27%), Gaps = 12/211 (5%)
Query: 389 MPQVAPQGVFSRGFNSTAINVTWNPIELIRENIRGRLIGHRIKYWKEDNPEETAVYYLSR 448
+P P+ R N W P L E E Y
Sbjct: 2 LPPGKPEIFKCRSPNKETFTCWWRPGTDGGLPTNYSL---TYHREGETLMHECPDYITGG 58
Query: 449 TTRNWALIVGLQPDTKYYVKVMAYNNAGEGPESERYLERTYR---KAPQKPPSAVHIKGI 505
Y + V A N G E Y++ TY P + V
Sbjct: 59 PNSCHFGKQYTSMWRTYIMMVNATNQMGSSFSDELYVDVTYIVQPDPPLELAVEVKQPED 118
Query: 506 NPTTVHVTWRY--VSPSFEEEPIIGYKVRVWEVDQDMSRANDTIIPVGNTLDADIVDLSP 563
+ + W + + Y++R+ I G + I+ L P
Sbjct: 119 RKPYLWIKWSPPTLIDLKTGWFTLLYEIRLKPEKAA----EWEIHFAGQQTEFKILSLHP 174
Query: 564 GKRYHMRVLAFSNGGDGRMSSPAITFQMGEE 594
G++Y ++V + G SPA Q+ +
Sbjct: 175 GQKYLVQVRCKPDHGYWSAWSPATFIQIPSD 205
Score = 35.8 bits (82), Expect = 0.021
Identities = 25/133 (18%), Positives = 40/133 (30%), Gaps = 15/133 (11%)
Query: 161 VKSTVGKISTKTTVIVEGPPGLPGGVQVVEVHKTSATIQWTDGATNGRPITH----YKII 216
S + V + P L V+ E K I+W+ Y+I
Sbjct: 88 SFSDELYVDVTYIVQPDPPLELAVEVKQPEDRKPYLWIKWSPPTLIDLKTGWFTLLYEIR 147
Query: 217 ARTNWNSTWFNVSEHVIGKEVDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSP 276
+ + W E+ + E I + L P Y +V + GY SP
Sbjct: 148 LKPEKAAEW----------EIHFAGQQTEFKILS-LHPGQKYLVQVRCKPDHGYWSAWSP 196
Query: 277 SPQYNTPADKPYQ 289
+ P+D
Sbjct: 197 ATFIQIPSDFTMN 209
>2yuz_A Myosin-binding protein C, SLOW-type; immunoglobulin domain,
SLOW-type myosin-binding protein C, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 100
Score = 64.3 bits (157), Expect = 5e-13
Identities = 18/82 (21%), Positives = 31/82 (37%), Gaps = 7/82 (8%)
Query: 4 EGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGN---LLISPVSRDDSGIYSC 60
G + + C E + W K+G + R K+ + G L+I+ +D G Y
Sbjct: 21 LGKEICLKC--EISENIPGKWTKNGLPVQESDRLKVVQKGRIHKLVIANALTEDEGDYVF 78
Query: 61 TATNVHGMDESKGRLIVLHGPS 82
++ V+ GPS
Sbjct: 79 APDA--YNVTLPAKVHVISGPS 98
Score = 49.6 bits (119), Expect = 8e-08
Identities = 21/105 (20%), Positives = 37/105 (35%), Gaps = 24/105 (22%)
Query: 88 PPKI-------TIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINI- 139
KI T+ + + L+C ++ WT NG+ + E+ + +
Sbjct: 7 GLKILTPLTDQTVNLGKEICLKCEISE----NIPGKWTKNGLPVQ-------ESDRLKVV 55
Query: 140 -DGGL--LEITNASFADAGEYECVVKSTVGKISTKTTVIVEGPPG 181
G + L I NA D G+Y + ++ V V P
Sbjct: 56 QKGRIHKLVIANALTEDEGDYVFAPDA--YNVTLPAKVHVISGPS 98
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein,
neurite growth regulation; HET: NAG BMA; 2.00A {Mus
musculus}
Length = 361
Score = 69.5 bits (170), Expect = 6e-13
Identities = 17/83 (20%), Positives = 27/83 (32%), Gaps = 2/83 (2%)
Query: 2 AGEGGNVTIFCNPEAAPKPKFVWKKDGNII--GSGGRRKIFENGNLLISPVSRDDSGIYS 59
A G +TI C+ + K + NG+L V +D G+Y+
Sbjct: 258 AHLGDTLTIRCDTKQQGMTKVWVSPSNEQVLSQGSNGSVSVRNGDLFFKKVQVEDGGVYT 317
Query: 60 CTATNVHGMDESKGRLIVLHGPS 82
C A + L V +
Sbjct: 318 CYAMGETFNETLSVELKVYNFTL 340
Score = 56.4 bits (136), Expect = 1e-08
Identities = 13/112 (11%), Positives = 27/112 (24%), Gaps = 10/112 (8%)
Query: 88 PPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEIT 147
L +RC + + +W L++ ++++ G L
Sbjct: 253 ESAWEAHLGDTLTIRCDTKQQ---GMTKVWVSPS---NEQVLSQGSNGSVSVRNGDLFFK 306
Query: 148 NASFADAGEYECVVKSTVGKISTKTTVIVEGPPGLPGGVQVVEVHKTSATIQ 199
D G Y C + + V + +A
Sbjct: 307 KVQVEDGGVYTCYAMGETFNETLSVELKVYNFTLHGHH----DTLNAAADPW 354
>1ujt_A KIAA1568 protein; fibronectin type III domain, structural genomics,
riken structural genomics/proteomics initiative, RSGI,
unknown function; NMR {Homo sapiens} SCOP: b.1.2.1
Length = 120
Score = 64.5 bits (157), Expect = 7e-13
Identities = 23/100 (23%), Positives = 38/100 (38%), Gaps = 10/100 (10%)
Query: 403 NSTAINVTWNPIELIRENIRGRLIGHRIKYWKEDNPE---ETAVYYLSRTTRNWALIVGL 459
T + VTW + + G+R+ Y + + T A++V L
Sbjct: 28 TPTTVQVTWTV-----DRQPQFIQGYRVMYRQTSGLQATSSWQNLDAKVPTERSAVLVNL 82
Query: 460 QPDTKYYVKVMAYNNAGEGPESERYLERTYRKAPQKPPSA 499
+ Y +KV Y N +G +SE RT ++ P S
Sbjct: 83 KKGVTYEIKVRPYFNEFQGMDSESKTVRTTEESG--PSSG 120
Score = 56.8 bits (137), Expect = 3e-10
Identities = 24/95 (25%), Positives = 37/95 (38%), Gaps = 6/95 (6%)
Query: 502 IKGINPTTVHVTWRYVSPSFEEEPIIGYKVRVWEVDQDMSRANDTI--IPVGNTLDADIV 559
+ PTTV VTW + I GY+V + + ++ V A +V
Sbjct: 24 PVVLTPTTVQVTWTVDRQP---QFIQGYRVMYRQTSGLQATSSWQNLDAKVPTERSAVLV 80
Query: 560 DLSPGKRYHMRVLAFSNGGDGRMSSPAITFQMGEE 594
+L G Y ++V + N G S T + EE
Sbjct: 81 NLKKGVTYEIKVRPYFNEFQGMDSES-KTVRTTEE 114
Score = 48.7 bits (116), Expect = 3e-07
Identities = 16/93 (17%), Positives = 35/93 (37%), Gaps = 18/93 (19%)
Query: 304 LSISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETLKEYGNVGIAVVRIPSEFY----- 358
+ ++W Q Y++ +R+ + + S ++P+E
Sbjct: 32 VQVTWTVDR---QPQFIQGYRVMYRQTSGLQATSSWQNL-------DAKVPTERSAVLVN 81
Query: 359 ---YTEYEVKVQAINDVGPGPESEVVTIFSAED 388
YE+KV+ + G +SE T+ + E+
Sbjct: 82 LKKGVTYEIKVRPYFNEFQGMDSESKTVRTTEE 114
Score = 36.4 bits (84), Expect = 0.005
Identities = 16/83 (19%), Positives = 27/83 (32%), Gaps = 6/83 (7%)
Query: 194 TSATIQWTDGATNGRPITHYKIIARTNWNSTWFNVSEHVIGKEVDRYTGRKEASIENVLV 253
T+ + WT I Y+++ R ++ + + + A + N L
Sbjct: 30 TTVQVTWTVDRQPQ-FIQGYRVMYRQ---TSGLQATSSWQNLDAKV-PTERSAVLVN-LK 83
Query: 254 PWSTYEFKVIAGNELGYGEPSSP 276
TYE KV G S
Sbjct: 84 KGVTYEIKVRPYFNEFQGMDSES 106
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse;
HET: NAG BMA MAN; 3.25A {Homo sapiens}
Length = 440
Score = 69.4 bits (170), Expect = 1e-12
Identities = 18/91 (19%), Positives = 32/91 (35%), Gaps = 12/91 (13%)
Query: 4 EGGNVTIFCNPEAAPKPKFVWKK-DGNIIGSG---GRRKIFENGNLLISPVSRDDSGIYS 59
EG + C + W +G ++ G R + +G L + V+ D+G+Y+
Sbjct: 355 EGMAAELKCR-ASTSLTSVSWITPNGTVMTHGAYKVRIAVLSDGTLNFTNVTVQDTGMYT 413
Query: 60 CTATNVHGMDESKGRLIVLHGPSYYEQLPPK 90
C +N G + L V
Sbjct: 414 CMVSNSVGNTTASATLNVT-------GTHHH 437
Score = 56.3 bits (136), Expect = 1e-08
Identities = 22/96 (22%), Positives = 37/96 (38%), Gaps = 7/96 (7%)
Query: 86 QLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINI-DGGLL 144
+ P + + +L+C A T + W G + + I + G L
Sbjct: 346 EPPADLNVTEGMAAELKCRASTSL---TSVSWITPN---GTVMTHGAYKVRIAVLSDGTL 399
Query: 145 EITNASFADAGEYECVVKSTVGKISTKTTVIVEGPP 180
TN + D G Y C+V ++VG + T+ V G
Sbjct: 400 NFTNVTVQDTGMYTCMVSNSVGNTTASATLNVTGTH 435
>1v5j_A KIAA1355 protein, RSGI RUH-008; FN3 domain, human cDNA, structural
genomics, riken structural genomics/proteomics
initiative, cell adhesion; NMR {Homo sapiens} SCOP:
b.1.2.1
Length = 108
Score = 63.0 bits (153), Expect = 2e-12
Identities = 18/110 (16%), Positives = 33/110 (30%), Gaps = 9/110 (8%)
Query: 178 GPPGLPGGVQVVEVHKTSATIQWTDGATNGRPITHYKIIARTNWNSTWFNVSEHVIGKEV 237
P V + W + + Y + R + W + V G E
Sbjct: 5 SSGLSPPRGLVAVRTPRGVLLHWDPPELVPKRLDGYVLEGRQG-SQGWEVLDPAVAGTE- 62
Query: 238 DRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPSPQYNTPADKP 287
E + L+ YEF+++A +PS+ + + P
Sbjct: 63 ------TELLVPG-LIKDVLYEFRLVAFAGSFVSDPSNTANVSTSGLSGP 105
Score = 44.5 bits (105), Expect = 7e-06
Identities = 17/95 (17%), Positives = 32/95 (33%), Gaps = 5/95 (5%)
Query: 492 APQKPPSAVHIKGINPTTVHVTWRYVSPSFEEEPIIGYKVRVWEVDQDMSRANDTIIPVG 551
+ PP + P V + W P + + GY + + Q + + G
Sbjct: 6 SGLSPPRGLVAV-RTPRGVLLHW--DPPELVPKRLDGYVLEGRQGSQGWEVLDPAVA--G 60
Query: 552 NTLDADIVDLSPGKRYHMRVLAFSNGGDGRMSSPA 586
+ + L Y R++AF+ S+ A
Sbjct: 61 TETELLVPGLIKDVLYEFRLVAFAGSFVSDPSNTA 95
Score = 36.1 bits (83), Expect = 0.005
Identities = 17/96 (17%), Positives = 35/96 (36%), Gaps = 8/96 (8%)
Query: 404 STAINVTWNPIELIRENIRGRLIGHRIKYWKEDNPEETAVYYLSRTTRNWALIVGLQPDT 463
+ + W+P E + RL G+ ++ + E ++ T L+ GL D
Sbjct: 20 PRGVLLHWDP----PELVPKRLDGYVLEGRQGSQGWEVLDPAVAGTE-TELLVPGLIKDV 74
Query: 464 KYYVKVMAYNNAGEGPESERYLERTYRKAPQKPPSA 499
Y +++A+ + S + PS+
Sbjct: 75 LYEFRLVAFAGSFVSDPSN---TANVSTSGLSGPSS 107
Score = 35.7 bits (82), Expect = 0.007
Identities = 12/85 (14%), Positives = 24/85 (28%), Gaps = 5/85 (5%)
Query: 306 ISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETLKEYGNVGIAVVRIPSEFYYTEYEVK 365
+ W+P E Y + R+ + E L + +P YE +
Sbjct: 25 LHWDP--PELVPKRLDGYVLEGRQGSQ---GWEVLDPAVAGTETELLVPGLIKDVLYEFR 79
Query: 366 VQAINDVGPGPESEVVTIFSAEDMP 390
+ A S + ++
Sbjct: 80 LVAFAGSFVSDPSNTANVSTSGLSG 104
>1he7_A High affinity nerve growth factor receptor; transferase,
TRK-receptor, strand-swapping; 2.0A {Homo sapiens} SCOP:
b.1.1.4 PDB: 1wwa_X 1www_X
Length = 126
Score = 62.7 bits (152), Expect = 4e-12
Identities = 14/93 (15%), Positives = 31/93 (33%), Gaps = 10/93 (10%)
Query: 7 NVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKI----------FENGNLLISPVSRDDSG 56
+ I + + P P W +G+++ +G L ++ + ++G
Sbjct: 17 HWCIPFSVDGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQPTHVNNG 76
Query: 57 IYSCTATNVHGMDESKGRLIVLHGPSYYEQLPP 89
Y+ A N G + + P + P
Sbjct: 77 NYTLLAANPFGQASASIMAAFMDNPFEFNPEDP 109
Score = 54.6 bits (131), Expect = 3e-09
Identities = 12/93 (12%), Positives = 23/93 (24%), Gaps = 7/93 (7%)
Query: 117 WTHNGVRIGNMDLNELE----TPNINIDGGLLEITNASFADAGEYECVVKSTVGKISTKT 172
W NG + E N + G L + + + G Y + + G+ S
Sbjct: 34 WLFNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQPTHVNNGNYTLLAANPFGQASASI 93
Query: 173 TVIVEGPPGLP---GGVQVVEVHKTSATIQWTD 202
P + + +
Sbjct: 94 MAAFMDNPFEFNPEDPIPDTNSTSGDPVEKKDE 126
>2edh_A Obscurin; structural genomics, NPPSFA, national project on P
structural and functional analyses, riken structural
genomics/proteomics initiative; NMR {Homo sapiens}
Length = 113
Score = 62.4 bits (152), Expect = 4e-12
Identities = 20/82 (24%), Positives = 31/82 (37%), Gaps = 9/82 (10%)
Query: 4 EGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGN---LLISPVSRDDSGIYSC 60
EG + C E + W K + G R + ++G L I + +D+G Y C
Sbjct: 33 EGATAVLRC--ELSKMAPVEWWKGHETLRDGDRHSLRQDGARCELQIRGLVAEDAGEYLC 90
Query: 61 TATNVHGMDESKGRLIVLHGPS 82
G + + L V PS
Sbjct: 91 MC----GKERTSAMLTVRAMPS 108
Score = 53.1 bits (128), Expect = 6e-09
Identities = 23/121 (19%), Positives = 33/121 (27%), Gaps = 19/121 (15%)
Query: 67 GMDESKGRLIVLHGPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGN 126
+ L V P + + LRC W +
Sbjct: 5 SSGRTSAMLTVRALPIKFTEGLRNEEATEGATAVLRCELSK----MAPVEWWKGHETL-- 58
Query: 127 MDLNELETPNINI--DGGL--LEITNASFADAGEYECVVKSTVGKISTKTTVIVEGPPGL 182
+ ++ DG L+I DAGEY C+ GK T + V P
Sbjct: 59 -----RDGDRHSLRQDGARCELQIRGLVAEDAGEYLCM----CGKERTSAMLTVRAMPSG 109
Query: 183 P 183
P
Sbjct: 110 P 110
>3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33;
2.40A {Caenorhabditis elegans} PDB: 1koa_A
Length = 573
Score = 67.9 bits (166), Expect = 4e-12
Identities = 25/79 (31%), Positives = 33/79 (41%), Gaps = 3/79 (3%)
Query: 2 AGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGN---LLISPVSRDDSGIY 58
GEG + +C A+ P W KD + + NGN L I+ V DD G Y
Sbjct: 494 VGEGQSANFYCRVIASSPPVVTWHKDDRELKQSVKYMKRYNGNDYGLTINRVKGDDKGEY 553
Query: 59 SCTATNVHGMDESKGRLIV 77
+ A N +G E L V
Sbjct: 554 TVRAKNSYGTKEEIVFLNV 572
Score = 59.8 bits (145), Expect = 1e-09
Identities = 25/125 (20%), Positives = 42/125 (33%), Gaps = 18/125 (14%)
Query: 173 TVIVEGPPGLPGGVQVVEVHKTSATIQWT----DGATNGRPITHYKIIARTNWNSTWFNV 228
V P P + + + + W DG G +T+Y I R +W
Sbjct: 3 MVADVPEPEPPRFPIIENILDEAVILSWKPPALDG---GSLVTNYTIEKREAMGGSWSPC 59
Query: 229 SEHVIGKEVDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPSPQYNTPADKPY 288
++ R + L YEF++IA N+ G +P P+ P D+
Sbjct: 60 AK-----------SRYTYTTIEGLRAGKQYEFRIIAENKHGQSKPCEPTAPVLIPGDERK 108
Query: 289 QAPSR 293
+
Sbjct: 109 RRRGY 113
Score = 46.4 bits (110), Expect = 2e-05
Identities = 19/106 (17%), Positives = 38/106 (35%), Gaps = 11/106 (10%)
Query: 496 PPSAVHIKGINPTTVHVTWRYVSPSFE-EEPIIGYKVRVWEVDQDMSRANDTIIPVGNTL 554
PP I+ I V ++W+ P+ + + Y + E + P +
Sbjct: 12 PPRFPIIENILDEAVILSWK--PPALDGGSLVTNYTIEKREAM------GGSWSPCAKSR 63
Query: 555 D--ADIVDLSPGKRYHMRVLAFSNGGDGRMSSPAITFQMGEEKEFK 598
I L GK+Y R++A + G + P + ++ +
Sbjct: 64 YTYTTIEGLRAGKQYEFRIIAENKHGQSKPCEPTAPVLIPGDERKR 109
Score = 36.4 bits (84), Expect = 0.028
Identities = 11/65 (16%), Positives = 19/65 (29%), Gaps = 11/65 (16%)
Query: 116 IWTHNGVRIGNMDLNELETPNINI--DGGL--LEITNASFADAGEYECVVKSTVGKISTK 171
W + + ++ +G L I D GEY K++ G
Sbjct: 515 TWHKDDREL-------KQSVKYMKRYNGNDYGLTINRVKGDDKGEYTVRAKNSYGTKEEI 567
Query: 172 TTVIV 176
+ V
Sbjct: 568 VFLNV 572
Score = 30.2 bits (68), Expect = 2.3
Identities = 18/139 (12%), Positives = 43/139 (30%), Gaps = 10/139 (7%)
Query: 387 EDMPQVAPQGVFSRGFNSTAINVTWNPIELIRENIRGRLIGHRIKYWKEDNPEETAVYYL 446
P+ P+ A+ ++W P L + + + I+ + +
Sbjct: 7 VPEPE-PPRFPIIENILDEAVILSWKPPAL---DGGSLVTNYTIEKREAMGGSWSPC--- 59
Query: 447 SRTTRNWALIVGLQPDTKYYVKVMAYNNAGEGPESERYLERTYRKAPQKPPSAVHIKGIN 506
+++ + I GL+ +Y +++A N G+ E P ++
Sbjct: 60 AKSRYTYTTIEGLRAGKQYEFRIIAENKHGQSKPCE---PTAPVLIPGDERKRRRGYDVD 116
Query: 507 PTTVHVTWRYVSPSFEEEP 525
V + S +
Sbjct: 117 EQGKIVRGKGTVSSNYDNY 135
>2dku_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
Length = 103
Score = 62.0 bits (151), Expect = 4e-12
Identities = 20/77 (25%), Positives = 33/77 (42%), Gaps = 8/77 (10%)
Query: 4 EGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGN---LLISPVSRDDSGIYSC 60
E G C E P W+K + + G+ + + G L IS + + DS Y+C
Sbjct: 22 EKGTAVFTCKTEH-PAATVTWRKGLLELRASGKHQPSQEGLTLRLTISALEKADSDTYTC 80
Query: 61 TATNVHGMDESKGRLIV 77
G +S+ +L+V
Sbjct: 81 DI----GQAQSRAQLLV 93
Score = 45.8 bits (109), Expect = 2e-06
Identities = 12/72 (16%), Positives = 25/72 (34%), Gaps = 15/72 (20%)
Query: 116 IWTHNGVRIGNMDLNELETPNINI--DGGL--LEITNASFADAGEYECVVKSTVGKISTK 171
W + + + +G L I+ AD+ Y C +G+ ++
Sbjct: 40 TWRKGLLEL-------RASGKHQPSQEGLTLRLTISALEKADSDTYTCD----IGQAQSR 88
Query: 172 TTVIVEGPPGLP 183
++V+G P
Sbjct: 89 AQLLVQGRRSGP 100
>1cd9_B G-CSF-R, protein (G-CSF receptor); class1 cytokine, hematopoietic
receptor, signal transduction cytokine; HET: NAG; 2.80A
{Mus musculus} SCOP: b.1.2.1 b.1.2.1 PDB: 1pgr_B 1cto_A
1gcf_A
Length = 215
Score = 64.8 bits (157), Expect = 4e-12
Identities = 26/189 (13%), Positives = 60/189 (31%), Gaps = 14/189 (7%)
Query: 302 GDLSISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETLKEYGNVGI---AVVRIPSEFY 358
L WEP E + P + +R + D ++Q +T+ + + +
Sbjct: 20 NSLVCQWEP-GPE-THLPTSFILKSFRSRADCQYQGDTIPDCVAKKRQNNCSIPRKNLLL 77
Query: 359 YTEYEVKVQAINDVGPGPESEVVTIFSAEDMP-----QVAPQGVFSRGFNSTAINVTWNP 413
Y + VQA N +G ++ Q G + ++W P
Sbjct: 78 YQYMAIWVQAENMLGSSESPKLCLDPMDVVKLEPPMLQALDIGPDVVSHQPGCLWLSWKP 137
Query: 414 IELIRENIRGRLIGHRIKYWKEDNPEETAVYYLSRTTRNWALIVGLQPDTKYYVKVMAYN 473
+ ++Y + + + ++++ + GL Y +++
Sbjct: 138 ----WKPSEYMEQECELRYQPQLKGANWTLVFHLPSSKDQFELCGLHQAPVYTLQMRCIR 193
Query: 474 NAGEGPESE 482
++ G S
Sbjct: 194 SSLPGFWSP 202
Score = 60.2 bits (145), Expect = 2e-10
Identities = 29/206 (14%), Positives = 58/206 (28%), Gaps = 12/206 (5%)
Query: 179 PPGLPGGVQ-VVEVHKTSATIQWTDGATNGRPITHYKIIARTNWNSTWFNVSEHVIGKEV 237
PP P + ++ + S QW G P + R+ + + + +
Sbjct: 4 PPASPSNLSCLMHLTTNSLVCQWEPGPETHLPTSFILKSFRSRADCQYQGDTIPDCVAKK 63
Query: 238 DRYTGRKEASIENVLVPWSTYEFKVIAGNELGYG--EPSSPSPQYNTPADKPY--QAPSR 293
+ L+ + V A N LG P + P
Sbjct: 64 RQNNCSIPRKN---LLLYQYMAIWVQAENMLGSSESPKLCLDPMDVVKLEPPMLQALDIG 120
Query: 294 IGGGGGKIGDLSISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETLKEYGNVGIAVVRI 353
+ G L +SW+P ++ ++ + + TL + +
Sbjct: 121 PDVVSHQPGCLWLSWKPWKP--SEYMEQECELRYQPQLKGA--NWTLVFHLPSSKDQFEL 176
Query: 354 PSEFYYTEYEVKVQAINDVGPGPESE 379
Y ++++ I PG S
Sbjct: 177 CGLHQAPVYTLQMRCIRSSLPGFWSP 202
Score = 56.4 bits (135), Expect = 4e-09
Identities = 26/216 (12%), Positives = 59/216 (27%), Gaps = 14/216 (6%)
Query: 389 MPQVAPQGV-FSRGFNSTAINVTWNPIELIRENIRGRLIGHRIKYWKEDNPEETAVYYLS 447
P +P + + ++ W P L R + + +
Sbjct: 3 YPPASPSNLSCLMHLTTNSLVCQWEPGPETHLPTSFILKSFRSRADCQYQGDTIPDCVAK 62
Query: 448 RTTRN-WALIVGLQPDTKYYVKVMAYNNAGEGPESERYLERTYRKAPQKPPSAVHIK--- 503
+ N L + V A N G + L+ + PP +
Sbjct: 63 KRQNNCSIPRKNLLLYQYMAIWVQAENMLGSSESPKLCLDPMDVVKLE-PPMLQALDIGP 121
Query: 504 ---GINPTTVHVTWRYVSPSFEEEPIIGYKVRVWEVDQDMSRANDTIIPVGNTLDADIVD 560
P + ++W+ E ++R + + +P + ++
Sbjct: 122 DVVSHQPGCLWLSWKP--WKPSEYMEQECELRYQPQLKGANWTLVFHLP-SSKDQFELCG 178
Query: 561 LSPGKRYHMRVLAFSNGGDGRMS--SPAITFQMGEE 594
L Y +++ + G S SP + + +
Sbjct: 179 LHQAPVYTLQMRCIRSSLPGFWSPWSPGLQLRPTMK 214
Score = 42.1 bits (98), Expect = 2e-04
Identities = 12/99 (12%), Positives = 25/99 (25%), Gaps = 8/99 (8%)
Query: 180 PGLPGGVQVVEVHKTSATIQWTDGATNGRPITHYKIIARTNWNSTWFNVSEHVIGKEVDR 239
L G VV + W + ++ + + + H+
Sbjct: 115 QALDIGPDVVSHQPGCLWLSWKPWKPSEYMEQECELRYQPQLKGANWTLVFHLPSS---- 170
Query: 240 YTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPSP 278
+ + + L Y ++ G S SP
Sbjct: 171 ---KDQFELCG-LHQAPVYTLQMRCIRSSLPGFWSPWSP 205
>2eny_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 104
Score = 61.6 bits (150), Expect = 5e-12
Identities = 17/78 (21%), Positives = 29/78 (37%), Gaps = 8/78 (10%)
Query: 4 EGGNVTIFCN-PEAAPKPKFVWKKDGNIIGSGGRRKIFENGN---LLISPVSRDDSGIYS 59
EG + + C + +W G +GS R + G L++ + D+G
Sbjct: 22 EGESCSFECVLSHESASDPAMWTVGGKTVGSSSRFQATRQGRKYILVVREAAPSDAGEVV 81
Query: 60 CTATNVHGMDESKGRLIV 77
+ + SK LIV
Sbjct: 82 FSVRGL----TSKASLIV 95
Score = 47.4 bits (113), Expect = 5e-07
Identities = 19/99 (19%), Positives = 34/99 (34%), Gaps = 16/99 (16%)
Query: 91 ITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINI--DGGL--LEI 146
+ + + C + E +WT G +G + G L +
Sbjct: 18 MEVLEGESCSFECVL-SHESASDPAMWTVGGKTVG-------SSSRFQATRQGRKYILVV 69
Query: 147 TNASFADAGEYECVVKSTVGKISTKTTVIVEGPPGLPGG 185
A+ +DAGE V +++K ++IV G G
Sbjct: 70 REAAPSDAGEVVFS----VRGLTSKASLIVRERSGPSSG 104
>2eo1_A OBSCN protein, cDNA FLJ14124 FIS, clone mamma1002498;
beta-sandwich, IG-fold, structural genomics, NPPSFA;
NMR {Homo sapiens}
Length = 102
Score = 60.9 bits (148), Expect = 8e-12
Identities = 20/79 (25%), Positives = 34/79 (43%), Gaps = 8/79 (10%)
Query: 2 AGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGN---LLISPVSRDDSGIY 58
A G + T+ C A + + W KDG + S + ++ G L++ + ++G Y
Sbjct: 23 AEAGASATLSCEV-AQAQTEVTWYKDGKKLSSSSKVRVEAVGCTRRLVVQQAGQAEAGEY 81
Query: 59 SCTATNVHGMDESKGRLIV 77
SC A + RL V
Sbjct: 82 SCEAGG----QQLSFRLQV 96
Score = 47.4 bits (113), Expect = 4e-07
Identities = 21/116 (18%), Positives = 39/116 (33%), Gaps = 22/116 (18%)
Query: 67 GMDESKGRLIVLHGPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGN 126
G S G+++ + + + A + L C + +V W +G ++
Sbjct: 1 GSSGSSGKVVFAKEQPAHRE----VQAEAGASATLSCEV-AQAQTEV--TWYKDGKKLS- 52
Query: 127 MDLNELETPNINI--DGGL--LEITNASFADAGEYECVVKSTVGKISTKTTVIVEG 178
+ + + G L + A A+AGEY C G + V G
Sbjct: 53 ------SSSKVRVEAVGCTRRLVVQQAGQAEAGEYSCE----AGGQQLSFRLQVAG 98
>2dn7_A Receptor-type tyrosine-protein phosphatase F; LAR protein,
leukocyte antigen related, structural genomics, NPPSFA;
NMR {Homo sapiens} SCOP: b.1.2.1
Length = 107
Score = 60.9 bits (148), Expect = 1e-11
Identities = 21/111 (18%), Positives = 37/111 (33%), Gaps = 13/111 (11%)
Query: 177 EGPPGLPGGVQVVEVHKTSATIQWTDGATNGRPITHYKIIARTNWNSTWFNVSEHVIGKE 236
PG + + +A +QW + Y++ + + GK+
Sbjct: 5 SSGPG-RPTMMISTTAMNTALLQWHPPKELPGELLGYRLQYCRADEARPNTID---FGKD 60
Query: 237 VDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPSPQYNTPADKP 287
+T + L +TY F++ A N G GE + TP D
Sbjct: 61 DQHFT------VTG-LHKGTTYIFRLAAKNRAGLGEEFEKEIR--TPEDLS 102
Score = 52.0 bits (125), Expect = 1e-08
Identities = 23/95 (24%), Positives = 39/95 (41%), Gaps = 8/95 (8%)
Query: 404 STAINVTWNPIELIRENIRGRLIGHRIKYWKEDNPEETAVYYLSRTTRNWALIVGLQPDT 463
+ W+P + + G L+G+R++Y + D + + + GL T
Sbjct: 20 MNTALLQWHP----PKELPGELLGYRLQYCRADEARPNTIDFGKDDQH--FTVTGLHKGT 73
Query: 464 KYYVKVMAYNNAGEGPESERYLERTYRKAPQKPPS 498
Y ++ A N AG G E E+ + RT P S
Sbjct: 74 TYIFRLAAKNRAGLGEEFEKEI-RTPEDLS-GPSS 106
Score = 48.9 bits (117), Expect = 1e-07
Identities = 19/101 (18%), Positives = 33/101 (32%), Gaps = 7/101 (6%)
Query: 488 TYRKAPQKPPSAVHIKGINPTTVHVTWRYVSPSFEEEPIIGYKVRVWEVDQDMSRANDTI 547
+ P +P + I T + W P ++GY+++ D+ TI
Sbjct: 3 SGSSGPGRPT--MMISTTAMNTALLQWH--PPKELPGELLGYRLQYCRADEARPN---TI 55
Query: 548 IPVGNTLDADIVDLSPGKRYHMRVLAFSNGGDGRMSSPAIT 588
+ + L G Y R+ A + G G I
Sbjct: 56 DFGKDDQHFTVTGLHKGTTYIFRLAAKNRAGLGEEFEKEIR 96
Score = 39.7 bits (93), Expect = 3e-04
Identities = 16/87 (18%), Positives = 32/87 (36%), Gaps = 7/87 (8%)
Query: 304 LSISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETLKEYGNVGIAVVRIPSEFYYTEYE 363
+ W P P+E + Y++ + + ++ + + + T Y
Sbjct: 23 ALLQWHP-PKE-LPGELLGYRLQYCRADEARPNTIDFGKDDQH----FTVTGLHKGTTYI 76
Query: 364 VKVQAINDVGPGPESEVVTIFSAEDMP 390
++ A N G G E E I + ED+
Sbjct: 77 FRLAAKNRAGLGEEFE-KEIRTPEDLS 102
>2d9q_B Granulocyte colony-stimulating factor receptor; cytokine,
ligand-receptor complex, signaling protein-cytokin; HET:
NAG; 2.80A {Homo sapiens} SCOP: b.1.1.3 b.1.2.1 b.1.2.1
Length = 313
Score = 65.3 bits (158), Expect = 1e-11
Identities = 26/204 (12%), Positives = 61/204 (29%), Gaps = 16/204 (7%)
Query: 303 DLSISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETLKEY---GNVGIAVVRIPSEFYY 359
L WEP P + P + ++ + + + Q +++ + + Y
Sbjct: 115 SLICQWEPGPE--THLPTSFTLKSFKSRGNCQTQGDSILDCVPKDGQSHCSIPRKHLLLY 172
Query: 360 TEYEVKVQAINDVGPGPESEVVTIFSAEDMPQVAPQGVF------SRGFNSTAINVTWNP 413
+ VQA N +G S + + + + P + + + ++W P
Sbjct: 173 QNMGIWVQAENALGTS-MSPQLCLDPMDVVKLEPPMLRTMDPSPEAAPPQAGCLQLSWEP 231
Query: 414 IELIRENIRGRLIGHRIKYWKEDNPEETAVYYLSRTTRNWALIVGLQPDTKYYVKVMAYN 473
+ +++ + A+ + GL P T Y +++
Sbjct: 232 ----WQPGLHINQKCELRHKPQRGEASWALVGPLPLEALQYELCGLLPATAYTLQIRCIR 287
Query: 474 NAGEGPESERYLERTYRKAPQKPP 497
G S+ R +
Sbjct: 288 WPLPGHWSDWSPSLELRTTERAAA 311
Score = 64.6 bits (156), Expect = 2e-11
Identities = 31/306 (10%), Positives = 79/306 (25%), Gaps = 31/306 (10%)
Query: 4 EGGNVTIFC-----NPEAAPKPKFVWKKDGNIIGSGGRRKIFENG---NLLISPVSRDDS 55
G +T C P+P+ +W+ + G ++++ + + + ++ +
Sbjct: 14 LGDPITASCIIKQNCSHLDPEPQILWRLGAELQPGGRQQRLSDGTQESIITLPHLNHTQA 73
Query: 56 GIYSCTATNVHGMDESKGRLIVLHGPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAY 115
SC+ + + + P + +L + E L ++
Sbjct: 74 F-LSCSLNWGNSLQILDQVELRAGYPPAIPHNLSCLMNLTTSSLICQWEPGPETHLPTSF 132
Query: 116 IWTHNGVRIGNMDLNELETPNINIDGGL---LEITNASFADAGEYECVVKSTVGKIS--- 169
R + + DG + + ++ +G
Sbjct: 133 TLKSFKSRGNCQTQGDSILDCVPKDGQSHCSIPRKHLLLYQNMGIWVQAENALGTSMSPQ 192
Query: 170 ---TKTTVIVEGPPGLPGGVQVVEVHK---TSATIQWTDGATNGRPITHYKIIARTNWNS 223
V+ PP L E + W ++ +
Sbjct: 193 LCLDPMDVVKLEPPMLRTMDPSPEAAPPQAGCLQLSWEPWQPGLHINQKCELRHKPQRGE 252
Query: 224 TWFNVSEHVIGKEVDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPSPQYN-- 281
+ + + + + + + L+P + Y ++ G S SP
Sbjct: 253 ASWALVGPLPLEAL-------QYELCG-LLPATAYTLQIRCIRWPLPGHWSDWSPSLELR 304
Query: 282 TPADKP 287
T
Sbjct: 305 TTERAA 310
Score = 62.6 bits (151), Expect = 9e-11
Identities = 23/201 (11%), Positives = 50/201 (24%), Gaps = 11/201 (5%)
Query: 403 NSTAINVTWNPIELIRENIRGRLI-GHRIKYWKEDNPEETAVYYLSRTTRNWALIVGLQP 461
++++ W P L + + L
Sbjct: 112 TTSSLICQWEPGPETHLPTSFTLKSFKSRGNCQTQGDSILDCVPKDGQSHCSIPRKHLLL 171
Query: 462 DTKYYVKVMAYNNAGEGPESERYLERTYRKAPQKP-----PSAVHIKGINPTTVHVTWRY 516
+ V A N G + L+ + P + + ++W
Sbjct: 172 YQNMGIWVQAENALGTSMSPQLCLDPMDVVKLEPPMLRTMDPSPEAAPPQAGCLQLSWE- 230
Query: 517 VSPSFEEEPIIGYKVRVWEVDQDMSRANDTIIPVGNTLDADIVDLSPGKRYHMRVLAFSN 576
++R + S A +P+ ++ L P Y +++
Sbjct: 231 -PWQPGLHINQKCELRHKPQRGEASWALVGPLPLEAL-QYELCGLLPATAYTLQIRCIRW 288
Query: 577 GGDGRMS--SPAITFQMGEEK 595
G S SP++ + E
Sbjct: 289 PLPGHWSDWSPSLELRTTERA 309
>1p6f_A NKP46, natural cytotoxicity triggering receptor 1; natural
cytotoxicity receptor, NK cell receptor, immunoglobulin
fold, immune system; 2.20A {Homo sapiens} SCOP: b.1.1.4
b.1.1.4
Length = 242
Score = 64.2 bits (156), Expect = 1e-11
Identities = 23/163 (14%), Positives = 46/163 (28%), Gaps = 20/163 (12%)
Query: 4 EGGNVTIFC--NPEAAPKPKFVWKKDGNIIGSGGRRKIFENG--NLLISPVSRDDSGIYS 59
+ VTI C N A ++ +G++ + I ++ +G YS
Sbjct: 20 KEKQVTICCQGNYGAV---EYQLHFEGSLFAVDRPKPPERINKVKFYIPDMNSRMAGQYS 76
Query: 60 CTATNVHGMDESKGRLIVLHGPSYYE---QLPPKITIAAHRNLQLRCSAHTEELLDVAYI 116
C E L ++ Y + P + + + C T ++
Sbjct: 77 CIYRVGELWSEPSNLLDLVVTEMYDTPTLSVHPGPEVISGEKVTFYCRLDTA---TSMFL 133
Query: 117 WTHNGVRIGNMDLNELETPNINIDGGLLEITNASFADAGEYEC 159
G + ++ + + A G Y C
Sbjct: 134 LLKEG------RSSHVQRGY-GKVQAEFPLGPVTTAHRGTYRC 169
Score = 43.0 bits (101), Expect = 1e-04
Identities = 12/60 (20%), Positives = 20/60 (33%), Gaps = 2/60 (3%)
Query: 5 GGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTATN 64
G VT +C + F+ K+G + + PV+ G Y C +
Sbjct: 116 GEKVTFYCRLDT-ATSMFLLLKEGRSSHVQRGYGKVQ-AEFPLGPVTTAHRGTYRCFGSY 173
Score = 31.4 bits (71), Expect = 0.69
Identities = 19/109 (17%), Positives = 35/109 (32%), Gaps = 17/109 (15%)
Query: 85 EQLPPKITIAAH--------RNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPN 136
+Q PK I A + + + C + V Y G ++ + P
Sbjct: 2 QQTLPKPFIWAEPHFMVPKEKQVTICCQGNYG---AVEYQLHFEG----SLFAVDRPKPP 54
Query: 137 INIDGGLLEITNASFADAGEYECVVKSTVGKI--STKTTVIVEGPPGLP 183
I+ I + + AG+Y C+ + S ++V P
Sbjct: 55 ERINKVKFYIPDMNSRMAGQYSCIYRVGELWSEPSNLLDLVVTEMYDTP 103
>3qht_C Monobody YSMB-1; fibronectin type III, yeast small ubiquitin-like
modifier, S NOVO protein; 2.40A {Artificial gene}
Length = 97
Score = 60.1 bits (146), Expect = 1e-11
Identities = 18/98 (18%), Positives = 34/98 (34%), Gaps = 8/98 (8%)
Query: 393 APQGVFSRGFNSTAINVTWNPIELIRENIRGRLIGHRIKYWKEDNPEETAVYYLSRTTRN 452
P + T++ ++W+ + +RI Y + + + ++
Sbjct: 7 VPTKLEVVAATPTSLLISWDASS-------SSVSYYRITYGETGGNSPVQEFTVPGSSST 59
Query: 453 WALIVGLQPDTKYYVKVMAYNNAGEGPESERYLERTYR 490
A I GL P Y + V AY + + S YR
Sbjct: 60 -ATISGLSPGVDYTITVYAYYSYYDLYYSYSPSSINYR 96
Score = 57.0 bits (138), Expect = 2e-10
Identities = 20/95 (21%), Positives = 38/95 (40%), Gaps = 7/95 (7%)
Query: 496 PPSAVHIKGINPTTVHVTWRYVSPSFEEEPIIGYKVRVWEVDQDMSRANDTIIPVGNTLD 555
P+ + + PT++ ++W S + Y++ E + T+ G++
Sbjct: 7 VPTKLEVVAATPTSLLISW---DAS--SSSVSYYRITYGETGGNSPVQEFTV--PGSSST 59
Query: 556 ADIVDLSPGKRYHMRVLAFSNGGDGRMSSPAITFQ 590
A I LSPG Y + V A+ + D S +
Sbjct: 60 ATISGLSPGVDYTITVYAYYSYYDLYYSYSPSSIN 94
Score = 50.5 bits (121), Expect = 3e-08
Identities = 20/98 (20%), Positives = 33/98 (33%), Gaps = 12/98 (12%)
Query: 179 PPGLPGGVQVVEVHKTSATIQWTDGATNGRPITHYKIIARTNWNSTWFNVSEHVIGKEVD 238
+P ++VV TS I W A++ +++Y+I T+ + +E
Sbjct: 4 VSSVPTKLEVVAATPTSLLISWD--ASSS-SVSYYRI--------TYGETGGNSPVQEFT 52
Query: 239 RYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSP 276
A+I L P Y V A S
Sbjct: 53 VPGSSSTATISG-LSPGVDYTITVYAYYSYYDLYYSYS 89
Score = 34.7 bits (80), Expect = 0.011
Identities = 14/83 (16%), Positives = 25/83 (30%), Gaps = 13/83 (15%)
Query: 304 LSISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETLKEYGNVGIAVVR--IPSEFYYTE 361
L ISW+ + YY+I + + + G+ A + P +
Sbjct: 21 LLISWDASS-----SSVSYYRITYGETGGNS-PVQEFTVPGSSSTATISGLSP----GVD 70
Query: 362 YEVKVQAINDVGPGPE-SEVVTI 383
Y + V A +I
Sbjct: 71 YTITVYAYYSYYDLYYSYSPSSI 93
>2k1m_A Myosin-binding protein C, cardiac-type; IG-I domain, cardiac
muscle, hypertrophic cardiomyopathy, actin-binding,
cell adhesion, disease mutation; NMR {Homo sapiens}
Length = 95
Score = 60.0 bits (146), Expect = 2e-11
Identities = 16/79 (20%), Positives = 25/79 (31%), Gaps = 8/79 (10%)
Query: 2 AGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGN---LLISPVSRDDSGIY 58
G K W++ G+ I + + + G L + V D G Y
Sbjct: 20 VAAGSPAVFEAET-ERAGVKVRWQRGGSDISASNKYGLATEGTRHTLTVREVGPADQGSY 78
Query: 59 SCTATNVHGMDESKGRLIV 77
+ A G + K L V
Sbjct: 79 AVIA----GSSKVKFDLKV 93
Score = 42.7 bits (101), Expect = 2e-05
Identities = 17/101 (16%), Positives = 27/101 (26%), Gaps = 18/101 (17%)
Query: 81 PSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINI- 139
S + + P + +AA V W G I + +
Sbjct: 8 VSAFSKKPRSVEVAAGSPAVFEAETERA---GVKVRWQRGGSDIS-------ASNKYGLA 57
Query: 140 -DGGL--LEITNASFADAGEYECVVKSTVGKISTKTTVIVE 177
+G L + AD G Y + G K + V
Sbjct: 58 TEGTRHTLTVREVGPADQGSYAVI----AGSSKVKFDLKVI 94
>3vh8_G Killer cell immunoglobulin-like receptor 3DL1; immunoglobulin fold,
natural killer cell receptor, immune SY; HET: NAG; 1.80A
{Homo sapiens} PDB: 1im9_D
Length = 316
Score = 64.9 bits (158), Expect = 2e-11
Identities = 32/162 (19%), Positives = 58/162 (35%), Gaps = 13/162 (8%)
Query: 4 EGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTAT 63
GG+VT+ C+ F+ K+ I +IF+ + +SPV+ +G Y+C +
Sbjct: 37 RGGHVTLRCHYRH-RFNNFMLYKEDRIHIPIFHGRIFQE-SFNMSPVTTAHAGNYTCRGS 94
Query: 64 NVHGMDE----SKGRLIVLHGPSYYEQL--PPKITIAAHRNLQLRCSAHTEELLDVAYIW 117
+ H S +I++ G L P + + + L+C + +
Sbjct: 95 HPHSPTGWSAPSNPVVIMVTGNHRKPSLLAHPGPLVKSGERVILQCWSDIM---FEHFFL 151
Query: 118 THNGVRIGNMDLNELETPNINIDGGLLEITNASFADAGEYEC 159
G+ L ++ I A AG Y C
Sbjct: 152 HKEGISKDPSRLVGQIHDGVS--KANFSIGPMMLALAGTYRC 191
Score = 58.0 bits (140), Expect = 3e-09
Identities = 32/167 (19%), Positives = 47/167 (28%), Gaps = 18/167 (10%)
Query: 4 EGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENG----NLLISPVSRDDSGIYS 59
G V + C + F K+G +G N I P+ +G Y
Sbjct: 132 SGERVILQCWSDIMF-EHFFLHKEGISKDPSRLVGQIHDGVSKANFSIGPMMLALAGTYR 190
Query: 60 CTATNVHGMDE----SKGRLIVLHGPSYYEQL--PPKITIAAHRNLQLRCSAHTEELLDV 113
C + H + S IV+ GP L P + A ++ L CS+
Sbjct: 191 CYGSVTHTPYQLSAPSDPLDIVVTGPYEKPSLSAQPGPKVQAGESVTLSCSSR---SSYD 247
Query: 114 AYIWTHNGVRIGNMDLNELETPNINIDGGLLEITNASFADAGEYECV 160
Y + R G L + G Y C
Sbjct: 248 MYHLS----REGGAHERRLPAVRKVNRTFQADFPLGPATHGGTYRCF 290
Score = 33.7 bits (77), Expect = 0.14
Identities = 10/66 (15%), Positives = 18/66 (27%), Gaps = 3/66 (4%)
Query: 4 EGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGN--LLISPVSRDDSGIYSCT 61
G +VT+ C+ + + ++G N G Y C
Sbjct: 232 AGESVTLSCSSRS-SYDMYHLSREGGAHERRLPAVRKVNRTFQADFPLGPATHGGTYRCF 290
Query: 62 ATNVHG 67
+ H
Sbjct: 291 GSFRHS 296
>1wfu_A Unnamed protein product; FN3 domain, similar to 1700007B22RIK
protein, structural genomics, riken structural
genomics/proteomics initiative, RSGI; NMR {Mus musculus}
SCOP: b.1.2.1
Length = 120
Score = 60.4 bits (146), Expect = 2e-11
Identities = 19/124 (15%), Positives = 32/124 (25%), Gaps = 16/124 (12%)
Query: 169 STKTTVIVEGPPGLPGGVQVVEVHKTSATIQWTDGATNGRP-----ITHYKIIARTNWNS 223
S+ P P V +V S + W R + I
Sbjct: 5 SSGMEPHKVVPLSKPHPPVVGKVTHHSIELYWDLEQKEKRQGPQEQWLRFSIEEEDPKMH 64
Query: 224 TWFNVSEHVIGKEVDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPSPQYNTP 283
++ + +E L P + Y+F++ + G E S T
Sbjct: 65 SYGVIYTGY----------ATRHVVEG-LEPRTLYKFRLKVTSPSGEYEYSPVVSVATTR 113
Query: 284 ADKP 287
P
Sbjct: 114 ESGP 117
Score = 46.9 bits (111), Expect = 1e-06
Identities = 20/128 (15%), Positives = 41/128 (32%), Gaps = 9/128 (7%)
Query: 373 GPGPESEVVTIFSAEDMPQVAPQGVFSRGFNSTAINVTWNPIELIRENIRGRLIGHRIKY 432
G S + + +P P +I + W+ + + R +++
Sbjct: 1 GSSGSSGMEPH---KVVPLSKPHPPVVGKVTHHSIELYWDLEQ---KEKRQGPQEQWLRF 54
Query: 433 WKEDNPEETAVYY-LSRTTRNWALIVGLQPDTKYYVKVMAYNNAGEGPESERYLERTYRK 491
E+ + Y + ++ GL+P T Y ++ + +GE S T
Sbjct: 55 SIEEEDPKMHSYGVIYTGYATRHVVEGLEPRTLYKFRLKVTSPSGEYEYSPVVSVAT--T 112
Query: 492 APQKPPSA 499
P S
Sbjct: 113 RESGPSSG 120
Score = 45.7 bits (108), Expect = 3e-06
Identities = 18/113 (15%), Positives = 37/113 (32%), Gaps = 2/113 (1%)
Query: 488 TYRKAPQKPPSAVHIKGINPTTVHVTWRYVSPSFEEEPIIGYKVRVWEVDQDMSRANDTI 547
++ P P + + ++ + W + + +R ++D + +
Sbjct: 10 PHKVVPLSKPHPPVVGKVTHHSIELYWDL-EQKEKRQGPQEQWLRFSIEEEDPKMHSYGV 68
Query: 548 IPVGNTLDADIVDLSPGKRYHMRVLAFSNGGDGRMSSPAITFQMGEEKEFKSG 600
I G + L P Y R+ S G+ SP ++ E SG
Sbjct: 69 IYTGYATRHVVEGLEPRTLYKFRLKVTSPSGEYE-YSPVVSVATTRESGPSSG 120
Score = 39.9 bits (93), Expect = 3e-04
Identities = 27/124 (21%), Positives = 45/124 (36%), Gaps = 10/124 (8%)
Query: 269 GYGEPSSPSPQYNTPADKPYQAPSRIGGGGGKIGDLSI--SWEPLPREKQNAPNIYYKIF 326
G S P P KP P GK+ SI W+ +EK+ P + F
Sbjct: 1 GSSGSSGMEPHKVVPLSKP-HPPV-----VGKVTHHSIELYWDLEQKEKRQGPQEQWLRF 54
Query: 327 WRKKNDTEFQSETLKEYGNVGIAVVRIPSEFYYTEYEVKVQAINDVGPGPESEVVTIFSA 386
++ D + S + G VV T Y+ +++ + G S VV++ +
Sbjct: 55 SIEEEDPKMHSYGVIYTGYATRHVVEGLEPR--TLYKFRLKVTSPSGEYEYSPVVSVATT 112
Query: 387 EDMP 390
+
Sbjct: 113 RESG 116
>2cpc_A KIAA0657 protein; immunoglobulin domain, IG domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 113
Score = 59.8 bits (145), Expect = 3e-11
Identities = 18/94 (19%), Positives = 32/94 (34%), Gaps = 15/94 (15%)
Query: 2 AGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGN---LLISPVSRDDSGIY 58
A V + C P + W KDG + + + L++ V +DSG Y
Sbjct: 25 AVRLERVVLTCEL-CRPWAEVRWTKDGEEVVESPALLLQKEDTVRRLVLPAVQLEDSGEY 83
Query: 59 SCTATNVHGMDESKGRLIVLHGPSYYEQLPPKIT 92
C + + + + V + P +I
Sbjct: 84 LCEIDD----ESASFTVTV-------TEPPVRII 106
Score = 46.3 bits (110), Expect = 2e-06
Identities = 20/94 (21%), Positives = 33/94 (35%), Gaps = 18/94 (19%)
Query: 91 ITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINI--DGGL--LEI 146
+ + L C +V WT +G + E+P + + + + L +
Sbjct: 23 VAAVRLERVVLTCEL-CRPWAEV--RWTKDGEEVV-------ESPALLLQKEDTVRRLVL 72
Query: 147 TNASFADAGEYECVVKSTVGKISTKTTVIVEGPP 180
D+GEY C + S TV V PP
Sbjct: 73 PAVQLEDSGEYLCE----IDDESASFTVTVTEPP 102
>3qt2_A Interleukin-5 receptor subunit alpha; cytokine type I receptor
fold, fibronectin type III modules, helical bundle,
cytokine, ligand-receptor complex; HET: BGC; 2.55A {Homo
sapiens}
Length = 317
Score = 63.7 bits (154), Expect = 4e-11
Identities = 35/305 (11%), Positives = 81/305 (26%), Gaps = 34/305 (11%)
Query: 302 GDLSISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETLKEYGNVGIAVVRIPSEFYYTE 361
+ + W+P P ++Q N+ Y++ + ++++ + +
Sbjct: 26 AQVLLQWKPNPDQEQRNVNLEYQVKINAPKEDDYETRITESK--------AVTILHMGFS 77
Query: 362 YEVKVQAINDVGPGPESEV-VTIFSAEDMPQVAPQ-----------GVFSRGFNSTAINV 409
V+ ND S + + P + +++
Sbjct: 78 ASVRTILQNDHSLLASSWASAELHAPPGSPGTSIVNLTCTTNTTEDNYSRLRSYQVSLHC 137
Query: 410 TWNPIELIRENIRGRLIGHRIKYWKEDNPEETAVYYLSRTTRNWALIVGLQPDTKYYVKV 469
TW E+ + L + +E + + + V V
Sbjct: 138 TWMVGTDAPEDTQYFLYYRYGSWTEECQEYSMDTLGRNIACWFPRTFILSKGRDWLAVLV 197
Query: 470 MAYNNAGEGPESERYLERTYRKAPQKPPSAVHIKGINPTTVHVTWRYVSPSFEEEPIIGY 529
+ ++ PP V + I T + + W S Y
Sbjct: 198 NGSSKHSAIRPFDQLFALHAIDQI-NPPLNVTAE-IEGTRMSIQWEK-PVSAFPIHCFDY 254
Query: 530 KVRVWEVDQDMSRANDTIIPVGNTLDADIVDLSPGKRYHMRV---LAFSNGGDGRMS--S 584
+V++ + +A I + +Y ++V ++ G S S
Sbjct: 255 EVKIHNTRNGYLQI------EKLMTNAFISIIDDLSKYDVQVRAAVSSMCREAGLWSEWS 308
Query: 585 PAITF 589
I
Sbjct: 309 QPIYV 313
Score = 37.6 bits (86), Expect = 0.010
Identities = 14/88 (15%), Positives = 27/88 (30%), Gaps = 7/88 (7%)
Query: 496 PPSAVHIKGINPTTVHVTWRYVSPSFEEEPIIGYKVRVWEVDQDMSRANDTIIPVGNTLD 555
PP IK V + W+ + + Y+V++ +D T
Sbjct: 14 PPVNFTIKVTGLAQVLLQWKPNPDQEQRNVNLEYQVKINAPKEDDYE-------TRITES 66
Query: 556 ADIVDLSPGKRYHMRVLAFSNGGDGRMS 583
+ L G +R + ++ S
Sbjct: 67 KAVTILHMGFSASVRTILQNDHSLLASS 94
>1gxe_A Myosin binding protein C, cardiac-type; cytoskeleton, muscle, IGI,
thick filament, immunoglobulin domain; NMR {Homo
sapiens} SCOP: b.1.1.4
Length = 139
Score = 60.1 bits (145), Expect = 4e-11
Identities = 15/107 (14%), Positives = 32/107 (29%), Gaps = 32/107 (29%)
Query: 4 EGGNVTIFCNPEAAPKPKFVWKKDG-----------------------------NIIGSG 34
G + + P P +W+K + +
Sbjct: 32 AGNKLRLDVPISGDPAPTVIWQKAITQGNKAPARPAPDAPEDTGDSDEWVFDKKLLCETE 91
Query: 35 GRRKIFENGN---LLISPVSRDDSGIYSCTATNVHGMDESKGRLIVL 78
GR ++ + + ++D G+Y+ T N G D+ + V+
Sbjct: 92 GRVRVETTKDRSIFTVEGAEKEDEGVYTVTVKNPVGEDQVNLTVKVI 138
Score = 42.0 bits (98), Expect = 8e-05
Identities = 17/92 (18%), Positives = 29/92 (31%), Gaps = 4/92 (4%)
Query: 89 PKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINI----DGGLL 144
P T+ + + A D + + + L + + D +
Sbjct: 46 PAPTVIWQKAITQGNKAPARPAPDAPEDTGDSDEWVFDKKLLCETEGRVRVETTKDRSIF 105
Query: 145 EITNASFADAGEYECVVKSTVGKISTKTTVIV 176
+ A D G Y VK+ VG+ TV V
Sbjct: 106 TVEGAEKEDEGVYTVTVKNPVGEDQVNLTVKV 137
>1pd6_A Cardiac MYBP-C;, myosin-binding protein C, cardiac-type, domain C2;
IG domain, structural protein; NMR {Homo sapiens} SCOP:
b.1.1.4
Length = 104
Score = 59.3 bits (144), Expect = 4e-11
Identities = 18/78 (23%), Positives = 26/78 (33%), Gaps = 9/78 (11%)
Query: 4 EGGNVTIFCNPEAAPKPKFVWKKDGN-IIGSGGRRKIFENGN---LLISPVSRDDSGIYS 59
+G + + A + W K+G I SG + G L IS S D Y
Sbjct: 30 KGHKIRLTVE-LADHDAEVKWLKNGQEIQMSGSKYIFESIGAKRTLTISQCSLADDAAYQ 88
Query: 60 CTATNVHGMDESKGRLIV 77
C ++ L V
Sbjct: 89 CVVGG----EKCSTELFV 102
Score = 48.5 bits (116), Expect = 2e-07
Identities = 21/112 (18%), Positives = 38/112 (33%), Gaps = 17/112 (15%)
Query: 70 ESKGRLIVLHGPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDL 129
+ ++ ++L P ++ ++L + +V W NG I
Sbjct: 5 HHHSSMDEKKSTAFQKKLEPAYQVSKGHKIRLTVEL-ADHDAEV--KWLKNGQEI----- 56
Query: 130 NELETPNINI--DGGL--LEITNASFADAGEYECVVKSTVGKISTKTTVIVE 177
++ G L I+ S AD Y+CV VG T + V+
Sbjct: 57 -QMSGSKYIFESIGAKRTLTISQCSLADDAAYQCV----VGGEKCSTELFVK 103
>1wk0_A KIAA0970 protein; fibronectin type III domain, structural genomics,
riken structural genomics/proteomics initiative, RSGI,
unknown function; NMR {Homo sapiens} SCOP: b.1.2.1
Length = 137
Score = 59.6 bits (144), Expect = 6e-11
Identities = 26/141 (18%), Positives = 41/141 (29%), Gaps = 12/141 (8%)
Query: 476 GEGPESERYLERTYRKAPQKPPSAVHIKGINPTTVHVTWR-------YVSPSFEEEPIIG 528
G S + + I TV +TW + + G
Sbjct: 1 GSSGSSGDEETKAFEALLS-NIVKPVASDIQARTVVLTWSPPSSLINGETDESSVPELYG 59
Query: 529 YKVRVWEVDQDMSRANDTIIPVGNTLDADIVDLSPGKRYHMRVLAFSNGGDGRMSSPAIT 588
Y+V + +D + VG + + DL P YH +V A N G S
Sbjct: 60 YEVLISSTGKD---GKYKSVYVGEETNITLNDLKPAMDYHAKVQAEYNSIKGTPSEA-EI 115
Query: 589 FQMGEEKEFKSGSPALYSAST 609
F + P + S+
Sbjct: 116 FTTLSCEPDIPNPPRISGPSS 136
Score = 54.6 bits (131), Expect = 4e-09
Identities = 22/141 (15%), Positives = 44/141 (31%), Gaps = 21/141 (14%)
Query: 166 GKISTKTTVIVEGPPGLPGGVQVVEVHKTSATIQWT---------DGATNGRPITHYKII 216
G + T E ++ + + W+ ++ + Y+++
Sbjct: 4 GSSGDEETKAFEALLSNIVKPVASDIQARTVVLTWSPPSSLINGETDESSVPELYGYEVL 63
Query: 217 ARTNWNSTWFNVSEHVIGKEVDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSP 276
+ + +G+E ++ + L P Y KV A G PS
Sbjct: 64 ISSTGKDGKY--KSVYVGEET-------NITLND-LKPAMDYHAKVQAEYNSIKGTPSEA 113
Query: 277 SPQYNTPADKP-YQAPSRIGG 296
+ T + +P P RI G
Sbjct: 114 E-IFTTLSCEPDIPNPPRISG 133
Score = 54.2 bits (130), Expect = 5e-09
Identities = 19/128 (14%), Positives = 39/128 (30%), Gaps = 4/128 (3%)
Query: 373 GPGPESEVVTIFSAEDMPQVAPQGVFSRGFNSTAINVTWNPIELIRENIRGRLIGHRIKY 432
G S + E + + + + +TW+P + +
Sbjct: 1 GSSGSSGDEETKAFEALLS-NIVKPVASDIQARTVVLTWSPPSSLINGETDESSVPELYG 59
Query: 433 WK---EDNPEETAVYYLSRTTRNWALIVGLQPDTKYYVKVMAYNNAGEGPESERYLERTY 489
++ ++ + + L+P Y+ KV A N+ +G SE + T
Sbjct: 60 YEVLISSTGKDGKYKSVYVGEETNITLNDLKPAMDYHAKVQAEYNSIKGTPSEAEIFTTL 119
Query: 490 RKAPQKPP 497
P P
Sbjct: 120 SCEPDIPN 127
Score = 36.9 bits (85), Expect = 0.004
Identities = 16/98 (16%), Positives = 27/98 (27%), Gaps = 14/98 (14%)
Query: 304 LSISWEP-------LPREKQNAPNIYYKIFWRKKNDTEFQSETLKEYGNVGIAVVRIPSE 356
+ ++W P E Y++ K + +
Sbjct: 34 VVLTWSPPSSLINGETDESSVPELYGYEVLISSTGK----DGKYKSVYVGEETNITLNDL 89
Query: 357 FYYTEYEVKVQAINDVGPGPESEVV---TIFSAEDMPQ 391
+Y KVQA + G SE T+ D+P
Sbjct: 90 KPAMDYHAKVQAEYNSIKGTPSEAEIFTTLSCEPDIPN 127
>3cx2_A Myosin-binding protein C, cardiac-type; protonation states,
actin-binding, cardiomyopathy, cell adhesion, disease
mutation, immunoglobulin domain; 1.30A {Homo sapiens}
PDB: 2v6h_A 2avg_A
Length = 108
Score = 58.5 bits (141), Expect = 7e-11
Identities = 17/89 (19%), Positives = 28/89 (31%), Gaps = 15/89 (16%)
Query: 4 EGGNVTIFCNPEAAP---KPKFVWKKDGNI---IGSGGRRKIFENGN---------LLIS 48
GG++T A P W K + G ++ ++ + L I+
Sbjct: 18 VGGSITFSARVAGASLLKPPVVKWFKGKWVDLSSKVGQHLQLHDSYDRASKVYLFELHIT 77
Query: 49 PVSRDDSGIYSCTATNVHGMDESKGRLIV 77
+G Y C + D S L V
Sbjct: 78 DAQPAFTGSYRCEVSTKDKFDCSNFNLTV 106
Score = 44.6 bits (105), Expect = 6e-06
Identities = 15/96 (15%), Positives = 28/96 (29%), Gaps = 7/96 (7%)
Query: 88 PPKITIAAHRNLQLRCSAHTEELLDVAYI-WTHNGVRI------GNMDLNELETPNINID 140
P + ++ LL + W ++ L++ +
Sbjct: 11 PQDGEVTVGGSITFSARVAGASLLKPPVVKWFKGKWVDLSSKVGQHLQLHDSYDRASKVY 70
Query: 141 GGLLEITNASFADAGEYECVVKSTVGKISTKTTVIV 176
L IT+A A G Y C V + + + V
Sbjct: 71 LFELHITDAQPAFTGSYRCEVSTKDKFDCSNFNLTV 106
>1uct_A Immunoglobulin alpha FC receptor; beta stands, immune system; 2.10A
{Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1ovz_A*
1ow0_C*
Length = 218
Score = 61.0 bits (148), Expect = 9e-11
Identities = 24/162 (14%), Positives = 49/162 (30%), Gaps = 15/162 (9%)
Query: 4 EGGNVTIFCN-PEAAPKPKFVWKKDGNIIGSGGRRKIFE--NGNLLISPVSRDDSGIYSC 60
G+V I C A + + K+ G R K + + +I + + +G Y C
Sbjct: 22 LDGSVKIQCQAIREAYLTQLMIIKNSTYREIGRRLKFWNETDPEFVIDHMDANKAGRYQC 81
Query: 61 TATNVHGMDESKGRLIVLHGPSYYE---QLPPKITIAAHRNLQLRCSAHTEELLDVAYIW 117
H L ++ Y + + + N+ L C + + +
Sbjct: 82 QYRIGHYRFRYSDTLELVVTGLYGKPFLSADRGLVLMPGENISLTC--SSAHIPFDRFSL 139
Query: 118 THNGVRIGNMDLNELETPNINIDGGLLEITNASFADAGEYEC 159
G +L+ + + + +G Y C
Sbjct: 140 AKEG------ELSLPQHQSGE-HPANFSLGPVDLNVSGIYRC 174
Score = 48.7 bits (116), Expect = 1e-06
Identities = 15/64 (23%), Positives = 25/64 (39%), Gaps = 1/64 (1%)
Query: 4 EGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTAT 63
G N+++ C+ P +F K+G + + N + PV + SGIY C
Sbjct: 119 PGENISLTCSSAHIPFDRFSLAKEGELSLPQHQSGEH-PANFSLGPVDLNVSGIYRCYGW 177
Query: 64 NVHG 67
Sbjct: 178 YNRS 181
Score = 28.7 bits (64), Expect = 4.5
Identities = 20/105 (19%), Positives = 34/105 (32%), Gaps = 15/105 (14%)
Query: 89 PKITIAAH--------RNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINID 140
P I+A +++++C A E L I ++ R N
Sbjct: 8 PMPFISAKSSPVIPLDGSVKIQCQAIREAYLTQLMIIKNSTYREIGR-----RLKFWNET 62
Query: 141 GGLLEITNASFADAGEYECVVKSTVG--KISTKTTVIVEGPPGLP 183
I + AG Y+C + + S ++V G G P
Sbjct: 63 DPEFVIDHMDANKAGRYQCQYRIGHYRFRYSDTLELVVTGLYGKP 107
>2d3v_A Leukocyte immunoglobulin-like receptor subfamily A member 5 isoform
1; immunoglobulin-like fold, immune system; 1.85A {Homo
sapiens}
Length = 196
Score = 60.3 bits (146), Expect = 1e-10
Identities = 29/163 (17%), Positives = 55/163 (33%), Gaps = 14/163 (8%)
Query: 4 EGGNVTIFC--NPEAAPKPKFVWKKDGNIIGSGGRRKIFENG--NLLISPVSRDDSGIYS 59
G +VTI C EA ++ K+G+ + + I ++ +G Y
Sbjct: 18 RGNSVTIRCQGTLEAQ---EYRLVKEGSPEPWDTQNPLEPKNKARFSIPSMTEHHAGRYR 74
Query: 60 CTATNVHGMDESKGRLIVLHGPSYYE---QLPPKITIAAHRNLQLRCSAHTEELLDVAYI 116
C + G E L ++ Y + P + + N+ L+C + +I
Sbjct: 75 CYYYSPAGWSEPSDPLELVVTGFYNKPTLSALPSPVVTSGENVTLQCGSRLR---FDRFI 131
Query: 117 WTHNGVRIGNMDLNELETPNINIDGGLLEITNASFADAGEYEC 159
T G + L+ TP+ L + + + C
Sbjct: 132 LTEEGDHKLSWTLDSQLTPS-GQFQALFPVGPVTPSHRWMLRC 173
Score = 42.9 bits (101), Expect = 9e-05
Identities = 12/68 (17%), Positives = 22/68 (32%), Gaps = 6/68 (8%)
Query: 5 GGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENG-----NLLISPVSRDDSGIYS 59
G NVT+ C +F+ ++G+ S + PV+ +
Sbjct: 114 GENVTLQCGSRLRF-DRFILTEEGDHKLSWTLDSQLTPSGQFQALFPVGPVTPSHRWMLR 172
Query: 60 CTATNVHG 67
C + H
Sbjct: 173 CYGSRRHI 180
Score = 29.5 bits (66), Expect = 2.6
Identities = 16/86 (18%), Positives = 27/86 (31%), Gaps = 15/86 (17%)
Query: 89 PKITIAAH--------RNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINID 140
K T+ A ++ +RC E Y G + + + + P +
Sbjct: 4 SKATLWAEPGSVISRGNSVTIRCQGTLE---AQEYRLVKEG----SPEPWDTQNPLEPKN 56
Query: 141 GGLLEITNASFADAGEYECVVKSTVG 166
I + + AG Y C S G
Sbjct: 57 KARFSIPSMTEHHAGRYRCYYYSPAG 82
>2ee3_A Collagen alpha-1(XX) chain; KIAA1510, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 108
Score = 57.8 bits (140), Expect = 1e-10
Identities = 17/110 (15%), Positives = 29/110 (26%), Gaps = 9/110 (8%)
Query: 390 PQVAPQGVFSRGFNSTAINVTWNPIELIRENIRGRLIGHRIKYWKEDNPEETAVYYLSRT 449
P+ + + A V W + R+ Y +
Sbjct: 7 GLAPPRHLGFSDVSHDAARVFWEGAP-------RPVRLVRVTYVSSEGGHSGQTEAPGNA 59
Query: 450 TRNWALIVGLQPDTKYYVKVMAYNNAGEGPESERYLERTYRKAPQKPPSA 499
T A++ L T Y V+V G + +P PS+
Sbjct: 60 TS--AMLGPLSSSTTYTVRVTCLYPGGGSSTLTGRVTTKKAPSPSSGPSS 107
Score = 55.5 bits (134), Expect = 9e-10
Identities = 18/97 (18%), Positives = 30/97 (30%), Gaps = 8/97 (8%)
Query: 492 APQKPPSAVHIKGINPTTVHVTWRYVSPSFEEEPIIGYKVRVWEVDQDMSRANDTIIPVG 551
+ PP + ++ V W + P+ +V + S G
Sbjct: 6 SGLAPPRHLGFSDVSHDAARVFW---EGA--PRPVRLVRVTYVSSEGGHSG---QTEAPG 57
Query: 552 NTLDADIVDLSPGKRYHMRVLAFSNGGDGRMSSPAIT 588
N A + LS Y +RV GG + +T
Sbjct: 58 NATSAMLGPLSSSTTYTVRVTCLYPGGGSSTLTGRVT 94
Score = 53.2 bits (128), Expect = 5e-09
Identities = 17/114 (14%), Positives = 30/114 (26%), Gaps = 14/114 (12%)
Query: 179 PPGLPGGVQVVEVHKTSATIQWTDGATNGRPITHYKIIARTNWNSTWFNVSEHVIGKEVD 238
P + +V +A + W RP+ ++ ++ E
Sbjct: 7 GLAPPRHLGFSDVSHDAARVFWEGAP---RPVRLVRVTYVSSEGGHSGQT-------EAP 56
Query: 239 RYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPSPQYNTPADKPYQAPS 292
A + L +TY +V G + A P PS
Sbjct: 57 G--NATSAMLGP-LSSSTTYTVRVTCLYPGGGSSTLTGRVT-TKKAPSPSSGPS 106
Score = 36.2 bits (84), Expect = 0.004
Identities = 14/93 (15%), Positives = 22/93 (23%), Gaps = 13/93 (13%)
Query: 304 LSISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETLKEYGNVGIAVVR--IPSEFYYTE 361
+ WE P P ++ + GN A++ T
Sbjct: 24 ARVFWEGAP-----RPVRLVRVTYVSSEGGHSGQTEAP--GNATSAMLGPLSS----STT 72
Query: 362 YEVKVQAINDVGPGPESEVVTIFSAEDMPQVAP 394
Y V+V + G P P
Sbjct: 73 YTVRVTCLYPGGGSSTLTGRVTTKKAPSPSSGP 105
>2dlt_A Myosin binding protein C, fast-type; IG-like domain, mybpc2,
structural genomics, NPPSFA; NMR {Mus musculus}
Length = 106
Score = 57.8 bits (140), Expect = 1e-10
Identities = 17/79 (21%), Positives = 24/79 (30%), Gaps = 8/79 (10%)
Query: 4 EGGNVTIFCNPEAA-PKPKFVWKKDGNIIGSGGRRKIFENGN---LLISPVSRDDSGIYS 59
C E + K W K+G + R I G L+I V +D G Y+
Sbjct: 22 AAEQAVFKC--EVSDEKVTGKWYKNGVEVRPSKRITISHVGRFHKLVIDDVRPEDEGDYT 79
Query: 60 CTATNVHGMDESKGRLIVL 78
+L L
Sbjct: 80 FVPDGYAL--SLSAKLNFL 96
Score = 43.5 bits (103), Expect = 1e-05
Identities = 20/99 (20%), Positives = 30/99 (30%), Gaps = 21/99 (21%)
Query: 88 PPKI-------TIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINI- 139
++ T+ A +C E V W NGV + + I I
Sbjct: 8 QLEVLQDIADLTVKAAEQAVFKCEVSDE---KVTGKWYKNGVEVR-------PSKRITIS 57
Query: 140 -DGGL--LEITNASFADAGEYECVVKSTVGKISTKTTVI 175
G L I + D G+Y V +S K +
Sbjct: 58 HVGRFHKLVIDDVRPEDEGDYTFVPDGYALSLSAKLNFL 96
>3b83_A Ten-D3; beta sheet, computational redesigned protein, alternative
splicing, cell adhesion, coiled coil, EGF-like domain,
extracellular matrix; 2.40A {Homo sapiens}
Length = 100
Score = 57.4 bits (139), Expect = 2e-10
Identities = 21/93 (22%), Positives = 32/93 (34%), Gaps = 7/93 (7%)
Query: 496 PPSAVHIKGINPTTVHVTWRYVSPSFEEEPIIGYKVRVWEVDQDMSRANDTIIPVGNTLD 555
PP + + I TT VTW P PI G V + T+ +
Sbjct: 4 PPFNIKVTNITLTTAVVTW---QPP--ILPIEGILVTFGRKNDPSDET--TVDLTSSITS 56
Query: 556 ADIVDLSPGKRYHMRVLAFSNGGDGRMSSPAIT 588
+ +L P Y +R++A + S T
Sbjct: 57 LTLTNLEPNTTYEIRIVARNGQQYSPPVSTTFT 89
Score = 56.2 bits (136), Expect = 4e-10
Identities = 16/90 (17%), Positives = 34/90 (37%), Gaps = 8/90 (8%)
Query: 393 APQGVFSRGFNSTAINVTWNPIELIRENIRGRLIGHRIKYWKEDNPEETAVYYLSRTTRN 452
P + T VTW P + G + + ++++P + L+ +
Sbjct: 4 PPFNIKVTNITLTTAVVTWQPPI-------LPIEGILVTFGRKNDPSDETTVDLTSSIT- 55
Query: 453 WALIVGLQPDTKYYVKVMAYNNAGEGPESE 482
+ L+P+T Y ++++A N P
Sbjct: 56 SLTLTNLEPNTTYEIRIVARNGQQYSPPVS 85
Score = 55.9 bits (135), Expect = 5e-10
Identities = 19/95 (20%), Positives = 36/95 (37%), Gaps = 12/95 (12%)
Query: 183 PGGVQVVEVHKTSATIQWTDGATNGRPITHYKIIARTNWNSTWFNVSEHVIGKEVDRYTG 242
P ++V + T+A + W PI + + + + + + T
Sbjct: 5 PFNIKVTNITLTTAVVTWQPPIL---PIEGILVTFGRKNDPSDETTVD--LTSSITSLT- 58
Query: 243 RKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPS 277
+ N L P +TYE +++A N Y P S +
Sbjct: 59 -----LTN-LEPNTTYEIRIVARNGQQYSPPVSTT 87
Score = 32.4 bits (74), Expect = 0.079
Identities = 15/80 (18%), Positives = 28/80 (35%), Gaps = 12/80 (15%)
Query: 304 LSISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETLKEYGNVGIAVVR--IPSEFYYTE 361
++W+P P P + + +KND T+ ++ + P T
Sbjct: 18 AVVTWQP-PI----LPIEGILVTFGRKNDPS-DETTVDLTSSITSLTLTNLEP----NTT 67
Query: 362 YEVKVQAINDVGPGPESEVV 381
YE+++ A N P
Sbjct: 68 YEIRIVARNGQQYSPPVSTT 87
>1mq8_A ICAM-1, intercellular adhesion molecule-1, CD54 antigen; IG
superfamily, rossmann fold, metal mediated protein
interf immune system; HET: NAG; 3.30A {Homo sapiens}
SCOP: b.1.1.3 b.1.1.4
Length = 291
Score = 61.4 bits (148), Expect = 2e-10
Identities = 24/194 (12%), Positives = 45/194 (23%), Gaps = 24/194 (12%)
Query: 4 EGGNVTIFC---NPEAAPKPKFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSC 60
G N+T+ C V + + + +SC
Sbjct: 100 VGKNLTLRCQVEGGAPRANLTVVLLRGEKELKREPAVGEPAEVTTTVLVRRDHHGANFSC 159
Query: 61 TATNVHGMDESKG--------RLIVLHGPSYYEQLPPKITIAAHRNLQLRCSAHTEELLD 112
+ +L P+ QL + + CS +
Sbjct: 160 RTELDLRPQGLELFENTSAPYQLQTFVLPATPPQLVSPRVLEVDTQGTVVCSLDGLFPVS 219
Query: 113 VAYIWTHNGVRIGNMDLNELETPNINIDGGLLEIT---NASFADAGEYECVVKSTVGKIS 169
A + G ++ P + + + D G +G S
Sbjct: 220 EAQVHLALG--------DQRLNPTVTYGNDSFSAKASVSVTAEDEGTQRLTCAVILGNQS 271
Query: 170 TKT--TVIVEGPPG 181
+T TV + P
Sbjct: 272 QETLQTVTIYSFPA 285
Score = 29.8 bits (66), Expect = 2.2
Identities = 10/96 (10%), Positives = 30/96 (31%), Gaps = 12/96 (12%)
Query: 88 PPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEIT 147
P K+ + ++ + CS + + ++ ++ + +
Sbjct: 6 PSKVILPRGGSVLVTCST------------SCDQPKLLGIETPLPKKELLLPGNNRKVYE 53
Query: 148 NASFADAGEYECVVKSTVGKISTKTTVIVEGPPGLP 183
++ + + C G+ + KT + V P
Sbjct: 54 LSNVQEDSQPMCYSNCPDGQSTAKTFLTVYWTPERV 89
>2dav_A SLOW MYBP-C, myosin-binding protein C, SLOW-type; IG domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
b.1.1.4
Length = 126
Score = 58.1 bits (140), Expect = 2e-10
Identities = 17/94 (18%), Positives = 27/94 (28%), Gaps = 15/94 (15%)
Query: 4 EGGNVTIFCNPEAAP---KPKFVWKKDGNI---IGSGGRRKIFENGN---------LLIS 48
G ++T +A KP W K + +G ++ E + I
Sbjct: 21 VGEDITFIAKVKAEDLLRKPTIKWFKGKWMDLASKAGKHLQLKETFERHSRVYTFEMQII 80
Query: 49 PVSRDDSGIYSCTATNVHGMDESKGRLIVLHGPS 82
+ +G Y C T D L V
Sbjct: 81 KAKDNFAGNYRCEVTYKDKFDSCSFDLEVHESTG 114
Score = 49.2 bits (117), Expect = 2e-07
Identities = 19/107 (17%), Positives = 31/107 (28%), Gaps = 7/107 (6%)
Query: 88 PPKITIAAHRNLQLRCSAHTEELLDVAYI-WTHNGVRI------GNMDLNELETPNINID 140
P T+ ++ E+LL I W ++ L E + +
Sbjct: 14 PQGGTVKVGEDITFIAKVKAEDLLRKPTIKWFKGKWMDLASKAGKHLQLKETFERHSRVY 73
Query: 141 GGLLEITNASFADAGEYECVVKSTVGKISTKTTVIVEGPPGLPGGVQ 187
++I A AG Y C V S + V G +
Sbjct: 74 TFEMQIIKAKDNFAGNYRCEVTYKDKFDSCSFDLEVHESTGTTPNID 120
>3p2t_A Leukocyte immunoglobulin-like receptor subfamily 4; LILR, IG,
inhibitory receptor, disulfide, immune system; 1.70A
{Homo sapiens}
Length = 196
Score = 59.8 bits (145), Expect = 2e-10
Identities = 21/161 (13%), Positives = 51/161 (31%), Gaps = 11/161 (6%)
Query: 4 EGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFE--NGNLLISPVSRDDSGIYSCT 61
G +VTI+C ++ K+ + + + I ++ D +G Y C
Sbjct: 18 WGNSVTIWCQG-TLEAREYRLDKEESPAPWDRQNPLEPKNKARFSIPSMTEDYAGRYRCY 76
Query: 62 ATNVHGMDESKGRLIVLHGPSYYE---QLPPKITIAAHRNLQLRCSAHTEELLDVAYIWT 118
+ G + L ++ +Y + P + + +++ L C + + ++
Sbjct: 77 YRSPVGWSQPSDPLELVMTGAYSKPTLSALPSPLVTSGKSVTLLCQSRSP---MDTFLLC 133
Query: 119 HNGVRIGNMDLNELETPNINIDGGLLEITNASFADAGEYEC 159
+ L ++ + G Y C
Sbjct: 134 KERAAHPLLCLR--SEHGAQQHQAEFPMSPVTSVHGGTYRC 172
Score = 46.0 bits (109), Expect = 8e-06
Identities = 14/67 (20%), Positives = 24/67 (35%), Gaps = 5/67 (7%)
Query: 4 EGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENG----NLLISPVSRDDSGIYS 59
G +VT+ C + P F+ K+ R +SPV+ G Y
Sbjct: 113 SGKSVTLLCQSRS-PMDTFLLCKERAAHPLLCLRSEHGAQQHQAEFPMSPVTSVHGGTYR 171
Query: 60 CTATNVH 66
C +++
Sbjct: 172 CFSSHGF 178
Score = 30.6 bits (69), Expect = 1.2
Identities = 19/105 (18%), Positives = 34/105 (32%), Gaps = 17/105 (16%)
Query: 89 PKITIAAH--------RNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINID 140
PK T+ A ++ + C E Y + + + P +
Sbjct: 4 PKPTLWAEPGSVISWGNSVTIWCQGTLE---AREYRLDKEE----SPAPWDRQNPLEPKN 56
Query: 141 GGLLEITNASFADAGEYECVVKSTVG--KISTKTTVIVEGPPGLP 183
I + + AG Y C +S VG + S +++ G P
Sbjct: 57 KARFSIPSMTEDYAGRYRCYYRSPVGWSQPSDPLELVMTGAYSKP 101
>3k2m_C Monobody HA4; engineered binding protein, antibody mimic,
protein-protein SH2 domain, ATP-binding, phosphoprotein;
1.75A {Homo sapiens} PDB: 3uyo_D 1ttf_A 1ttg_A 3rzw_A
1fna_A
Length = 101
Score = 57.1 bits (138), Expect = 2e-10
Identities = 22/100 (22%), Positives = 33/100 (33%), Gaps = 10/100 (10%)
Query: 179 PPGLPGGVQVVEVHKTSATIQWTDGATNGRPITHYKIIARTNWNSTWFNVSEHVIGKEVD 238
+P ++VV TS I W ++ + +Y+I ++ V E +
Sbjct: 4 VSSVPTKLEVVAATPTSLLISWDAPMSSS-SVYYYRITYGETGGNSP--VQEFTVPYSSS 60
Query: 239 RYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPSP 278
T I L P Y V A E G SP
Sbjct: 61 TAT------ISG-LSPGVDYTITVYAWGEDSAGYMFMYSP 93
Score = 57.1 bits (138), Expect = 2e-10
Identities = 15/90 (16%), Positives = 30/90 (33%), Gaps = 6/90 (6%)
Query: 393 APQGVFSRGFNSTAINVTWNPIELIRENIRGRLIGHRIKYWKEDNPEETAVYYLSRTTRN 452
P + T++ ++W+ + +RI Y + + + ++
Sbjct: 7 VPTKLEVVAATPTSLLISWDA-----PMSSSSVYYYRITYGETGGNSPVQEFTVPYSSST 61
Query: 453 WALIVGLQPDTKYYVKVMAYNNAGEGPESE 482
A I GL P Y + V A+ G
Sbjct: 62 -ATISGLSPGVDYTITVYAWGEDSAGYMFM 90
Score = 55.5 bits (134), Expect = 7e-10
Identities = 18/96 (18%), Positives = 35/96 (36%), Gaps = 6/96 (6%)
Query: 496 PPSAVHIKGINPTTVHVTWRYVSPSFEEEPIIGYKVRVWEVDQDMSRANDTIIPVGNTLD 555
P+ + + PT++ ++W + Y++ E + T+ ++
Sbjct: 7 VPTKLEVVAATPTSLLISW---DAPMSSSSVYYYRITYGETGGNSPVQEFTV--PYSSST 61
Query: 556 ADIVDLSPGKRYHMRVLAFSNGGDG-RMSSPAITFQ 590
A I LSPG Y + V A+ G I+
Sbjct: 62 ATISGLSPGVDYTITVYAWGEDSAGYMFMYSPISIN 97
Score = 37.8 bits (88), Expect = 0.001
Identities = 15/82 (18%), Positives = 26/82 (31%), Gaps = 10/82 (12%)
Query: 304 LSISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETLKEYGNVGIAVVR--IPSEFYYTE 361
L ISW+ ++ YY+I + + E + A + P +
Sbjct: 21 LLISWDA---PMSSSSVYYYRITYGETGGNSPVQEFTVP-YSSSTATISGLSP----GVD 72
Query: 362 YEVKVQAINDVGPGPESEVVTI 383
Y + V A + G I
Sbjct: 73 YTITVYAWGEDSAGYMFMYSPI 94
>2e6p_A Obscurin-like protein 1; IG-like domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 104
Score = 56.6 bits (137), Expect = 3e-10
Identities = 13/79 (16%), Positives = 23/79 (29%), Gaps = 8/79 (10%)
Query: 2 AGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGN---LLISPVSRDDSGIY 58
V + C + W KDG + + +G L++ DSG +
Sbjct: 22 FTTSERVVLTCEL-SRVDFPATWYKDGQKVEESELLVVKMDGRKHRLILPEAKVQDSGEF 80
Query: 59 SCTATNVHGMDESKGRLIV 77
C + + V
Sbjct: 81 ECRTEG----VSAFFGVTV 95
Score = 48.2 bits (115), Expect = 3e-07
Identities = 22/99 (22%), Positives = 35/99 (35%), Gaps = 18/99 (18%)
Query: 91 ITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINI--DGGL--LEI 146
+T + L C D W +G ++ E+ + + DG L +
Sbjct: 20 LTFTTSERVVLTCELSRV---DFPATWYKDGQKV-------EESELLVVKMDGRKHRLIL 69
Query: 147 TNASFADAGEYECVVKSTVGKISTKTTVIVEGPPGLPGG 185
A D+GE+EC +S V V+ P G G
Sbjct: 70 PEAKVQDSGEFECR----TEGVSAFFGVTVQDPSGPSSG 104
>2rb8_A Tenascin; beta sheet,loop design, alternative splicing, cell
adhesion, coiled coil, EGF-like domain, extracellular
matrix, glycoprotein; 1.45A {Homo sapiens} PDB: 2rbl_A
1ten_A
Length = 104
Score = 56.6 bits (137), Expect = 3e-10
Identities = 20/105 (19%), Positives = 36/105 (34%), Gaps = 9/105 (8%)
Query: 393 APQGVFSRGFNSTAINVTWNPIELIRENIRGRLIGHRIKYWKEDNPEETAVYYLSRTTRN 452
AP + + T +TW P + G + Y +D P + L+
Sbjct: 5 APSQIEVKDVTDTTALITWMPP-------SQPVDGFELTYGIKDVPGDRTTIDLTEDENQ 57
Query: 453 WALIVGLQPDTKYYVKVMAYNNAGEGPESERYLERTYRKAPQKPP 497
I L+PDT+Y V +++ ++ T A +
Sbjct: 58 -YSIGNLKPDTEYEVSLISRRGDMSSNPAKETF-TTGLAAALEHH 100
Score = 53.9 bits (130), Expect = 3e-09
Identities = 19/93 (20%), Positives = 35/93 (37%), Gaps = 7/93 (7%)
Query: 496 PPSAVHIKGINPTTVHVTWRYVSPSFEEEPIIGYKVRVWEVDQDMSRANDTIIPVGNTLD 555
PS + +K + TT +TW P +P+ G+++ D R TI +
Sbjct: 5 APSQIEVKDVTDTTALITW---MPP--SQPVDGFELTYGIKDVPGDRT--TIDLTEDENQ 57
Query: 556 ADIVDLSPGKRYHMRVLAFSNGGDGRMSSPAIT 588
I +L P Y + +++ + T
Sbjct: 58 YSIGNLKPDTEYEVSLISRRGDMSSNPAKETFT 90
Score = 49.7 bits (119), Expect = 7e-08
Identities = 19/105 (18%), Positives = 36/105 (34%), Gaps = 14/105 (13%)
Query: 183 PGGVQVVEVHKTSATIQWTDGATNGRPITHYKIIARTNWNSTWFNVSEHVIGKEVDRYTG 242
P ++V +V T+A I W + P+ +++ +D
Sbjct: 6 PSQIEVKDVTDTTALITWM--PPSQ-PVDGFELTYGIKDVPGDR--------TTIDLTED 54
Query: 243 RKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPSPQYNTPADKP 287
+ SI N L P + YE +I+ P+ + + T
Sbjct: 55 ENQYSIGN-LKPDTEYEVSLISRRGDMSSNPAKET--FTTGLAAA 96
Score = 28.9 bits (65), Expect = 1.6
Identities = 16/82 (19%), Positives = 28/82 (34%), Gaps = 13/82 (15%)
Query: 304 LSISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETLKEYGNVGIAVVR--IPSEFYYTE 361
I+W P P + P +++ + K+ T+ + + P TE
Sbjct: 19 ALITWMP-P----SQPVDGFELTYGIKDVPG-DRTTIDLTEDENQYSIGNLKP----DTE 68
Query: 362 YEVKVQAINDVGPG-PESEVVT 382
YEV + + P E T
Sbjct: 69 YEVSLISRRGDMSSNPAKETFT 90
>4doh_R Interleukin-20 receptor subunit alpha; IL10 family cytokine
receptor complex, alpha helical cytokin beta sandwhich
receptor fold, signaling complex; HET: NAG; 2.80A {Homo
sapiens}
Length = 221
Score = 59.9 bits (144), Expect = 3e-10
Identities = 27/188 (14%), Positives = 63/188 (33%), Gaps = 7/188 (3%)
Query: 306 ISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETLKEYGNVGIAVVRIPSEFYYTEYEVK 365
+ W P + Y + + ++ +++ N + + Y +Y +
Sbjct: 26 LQWTPPE--GLQGVKVTYTVQYFIYGQKKWLNKSECRNINRTYCDLSAETSDYEHQYYAR 83
Query: 366 VQAINDVGPGPESEVVTIFSAEDMPQVAPQGVFSRGFNSTAINVTWNPIELIREN---IR 422
V+AI +E + + P+ + S ++ +T +
Sbjct: 84 VRAIWGTKCSKWAESGRFYPFLETQIGPPEVALTTDEKSISVVLTAPEKWKRNPEDLPVS 143
Query: 423 GRLIGHRIKYWKEDNPEETAVYYLSRTTRNWALIVGLQPDTKYYVKVMAYNNA--GEGPE 480
+ I +KY ++ + T + ++ L+P+T Y V V ++
Sbjct: 144 MQQIYSNLKYNVSVLNTKSNRTWSQCVTNHTLVLTWLEPNTLYCVHVESFVPGPPRRAQP 203
Query: 481 SERYLERT 488
SE+ RT
Sbjct: 204 SEKQCART 211
Score = 49.5 bits (117), Expect = 7e-07
Identities = 29/225 (12%), Positives = 56/225 (24%), Gaps = 27/225 (12%)
Query: 176 VEGPPGLPGGVQVVEVHKTSATIQWTDGATNGRPITHYKIIARTNWNSTWFNVSEHVIGK 235
V G P + + ++ +QWT Y + W N SE
Sbjct: 5 VSGGLPKPANITFLSIN-MKNVLQWTPPEGLQGVKVTYTVQYFIYGQKKWLNKSEC---- 59
Query: 236 EVDRYTGRKEASI-ENVLVPWSTYEFKVIAGNELGYGEPSSPSPQYNTPADKPYQAPSRI 294
R R + Y +V A + S ++ + P
Sbjct: 60 ---RNINRTYCDLSAETSDYEHQYYARVRAIWGTKCS-KWAESGRFYPFLETQIGPPEVA 115
Query: 295 GGGGGKIGDLSISWEPLPREKQNA---------PNIYYKIFWRKKNDTEFQSETLKEYGN 345
K + ++ + N+ Y + S+ + +
Sbjct: 116 LTTDEKSISVVLTAPEKWKRNPEDLPVSMQQIYSNLKYNVSVLNTKSNRTWSQCVTNH-- 173
Query: 346 VGIAVVRIPSEFYYTEYEVKVQAINDV--GPGPESEVVTIFSAED 388
+ + T Y V V++ SE + +D
Sbjct: 174 ----TLVLTWLEPNTLYCVHVESFVPGPPRRAQPSEKQCARTLKD 214
Score = 46.8 bits (110), Expect = 6e-06
Identities = 28/201 (13%), Positives = 58/201 (28%), Gaps = 25/201 (12%)
Query: 393 APQGV--FSRGFNSTAINVTWNPIELIRENIRGRLIGHRIKYWKEDNPEETAVYYLSRTT 450
P + S + + W P E ++G + + ++Y+ +
Sbjct: 11 KPANITFLSINMKNV---LQWTPPE----GLQGVKVTYTVQYFIYGQKKWLNKSECRNIN 63
Query: 451 RNWALI--VGLQPDTKYYVKVMAYNNAGEGPESERYLERTYRKAPQKPPS--------AV 500
R + + + +YY +V A +E + + PP ++
Sbjct: 64 RTYCDLSAETSDYEHQYYARVRAIWGTKCSKWAESGRFYPFLETQIGPPEVALTTDEKSI 123
Query: 501 HIKGINPTTVHVTWRYVSPSFEE-EPIIGYKVRVWEVDQDMSRANDTIIPVGNTLDADIV 559
+ P + S ++ + Y V V + V N +
Sbjct: 124 SVVLTAPEKWKRNPEDLPVSMQQIYSNLKYNVSVLNTKSN----RTWSQCVTNH-TLVLT 178
Query: 560 DLSPGKRYHMRVLAFSNGGDG 580
L P Y + V +F G
Sbjct: 179 WLEPNTLYCVHVESFVPGPPR 199
>1oll_A NK receptor; immune system/receptor, NK cell triggering receptor,
immune system, IG domain, cytotoxicity, C2-type IG-like
domains; 1.93A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4
Length = 188
Score = 59.1 bits (143), Expect = 3e-10
Identities = 24/163 (14%), Positives = 46/163 (28%), Gaps = 20/163 (12%)
Query: 4 EGGNVTIFC--NPEAAPKPKFVWKKDGNIIGSGGRRKIFEN--GNLLISPVSRDDSGIYS 59
+ VTI C N A ++ +G++ + I ++ +G YS
Sbjct: 17 KEKQVTICCQGNYGAV---EYQLHFEGSLFAVDRPKPPERINKVKFYIPDMNSRMAGQYS 73
Query: 60 CTATNVHGMDE-SKGRLIVLHGPSYYEQL--PPKITIAAHRNLQLRCSAHTEELLDVAYI 116
C E S +V+ L P + + + C T ++
Sbjct: 74 CIYRVGELWSEPSNLLDLVVTEMYDTPTLSVHPGPEVISGEKVTFYCRLDTA---TSMFL 130
Query: 117 WTHNGVRIGNMDLNELETPNINIDGGLLEITNASFADAGEYEC 159
G + ++ + + A G Y C
Sbjct: 131 LLKEG------RSSHVQRGY-GKVQAEFPLGPVTTAHRGTYRC 166
Score = 41.7 bits (98), Expect = 2e-04
Identities = 13/60 (21%), Positives = 21/60 (35%), Gaps = 2/60 (3%)
Query: 5 GGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTATN 64
G VT +C + A F+ K+G + + PV+ G Y C +
Sbjct: 113 GEKVTFYCRLDTAT-SMFLLLKEGRSSHVQRGYGKVQ-AEFPLGPVTTAHRGTYRCFGSY 170
Score = 30.6 bits (69), Expect = 1.0
Identities = 15/86 (17%), Positives = 24/86 (27%), Gaps = 15/86 (17%)
Query: 89 PKITIAAH--------RNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINID 140
PK I A + + + C + V Y G E N
Sbjct: 3 PKPFIWAEPHFMVPKEKQVTICCQGNYG---AVEYQLHFEGSLFAVDRPKPPERINKVK- 58
Query: 141 GGLLEITNASFADAGEYECVVKSTVG 166
I + + AG+Y C+ +
Sbjct: 59 ---FYIPDMNSRMAGQYSCIYRVGEL 81
>3lqm_A Interleukin-10 receptor subunit beta; IL-10R2, common chain,
cytokine, IL-10, IL-22, IL- 28, IL-29, disulfide bond,
glycoprotein, membrane; 2.14A {Homo sapiens}
Length = 201
Score = 59.0 bits (142), Expect = 4e-10
Identities = 30/187 (16%), Positives = 59/187 (31%), Gaps = 16/187 (8%)
Query: 306 ISWEPLPREKQNAP-NIYYKIFWRKKNDTEFQSETLKEYGNVGIAVVRIPSEFYYTEYEV 364
+ WE K Y + ++ + T S Y ++ +
Sbjct: 19 LQWESPAFAKGQLTFTAQYLSYRIFQDKCMQTTLT----------ECDFSSLSKYGDHTL 68
Query: 365 KVQAINDVGPGPESEVVTIFSAEDMPQVAPQGV-FSRGFNSTAINVTWNPIELIRENIRG 423
+V+A + FS D + P G+ + + IE E
Sbjct: 69 RVRAEFADEHSDWVQ--ITFSPVDDTIIGPPGMQVEVLADCLHMRFLAPKIENEYETWTM 126
Query: 424 RLIGHRIKYWKEDNPEETAVYYLSRTTRNWALIVGLQPDTKYYVKVMAYNNA--GEGPES 481
+ + + Y + + T + ++ ++ L+P T Y V+V + G S
Sbjct: 127 KNVYNSWTYNVQYWKQGTDEKFQITPQYDFEVLRNLEPWTTYCVQVRGFLPDRNKAGEWS 186
Query: 482 ERYLERT 488
E E+T
Sbjct: 187 EPVCEQT 193
Score = 42.8 bits (100), Expect = 1e-04
Identities = 33/218 (15%), Positives = 64/218 (29%), Gaps = 38/218 (17%)
Query: 183 PGGVQVVEVHKTSATIQWTDGATNGRPITHYKIIARTNWNSTWFNVSEHVIGKEVDRYTG 242
P V++ V+ +QW A +T + + ++ T
Sbjct: 5 PENVRMNSVN-FKNILQWESPAFAKGQLT-FTAQYLSYRI-----------FQDKCMQTT 51
Query: 243 RKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPSPQYNTPADKPYQAPSRIGGGGGKIG 302
E + L + + +V A E S +P D P +
Sbjct: 52 LTECDFSS-LSKYGDHTLRVRAEFA---DEHSDWVQITFSPVDDTIIGPPGMQVEVLA-D 106
Query: 303 DLSISWEPLPREKQNAPNI----------YYKIFWRKKNDTEFQSETLKEYGNVGIAVVR 352
L + + P+ + Y +W++ D +FQ ++
Sbjct: 107 CLHMRFLA-PKIENEYETWTMKNVYNSWTYNVQYWKQGTDEKFQITPQYDF-------EV 158
Query: 353 IPSEFYYTEYEVKVQAINDV--GPGPESEVVTIFSAED 388
+ + +T Y V+V+ G SE V + D
Sbjct: 159 LRNLEPWTTYCVQVRGFLPDRNKAGEWSEPVCEQTTHD 196
>3g9v_A Interleukin 22 receptor, alpha 2; cytokine, cytokine receptor,
receptor, glycoprotein, polymorphism, secreted,
cytokine/cytokine receptor complex; 2.76A {Homo sapiens}
Length = 211
Score = 58.6 bits (141), Expect = 5e-10
Identities = 23/185 (12%), Positives = 50/185 (27%), Gaps = 13/185 (7%)
Query: 306 ISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETLKEYGNVGIAVVRIPSEFYYTEYEVK 365
+ W+P N + Y + ++ +++++ + + Y +
Sbjct: 25 LQWQPGRALTGN--SSVYFVQYKIYGQRQWKNKEDCWGTQELSCDLTSETSDIQEPYYGR 82
Query: 366 VQAINDVGPGPESEVVTIFSAEDMPQVAPQGVFSRGFNSTAINVTWNPIELIRENIRGRL 425
V+A + S + P ++ S + + + + +
Sbjct: 83 VRAASAGSYSEWSMTPRFTPWWETKIDPPVMNITQVNGSLLVILHAPNLPYRYQKEKNVS 142
Query: 426 IGH------RIKYWKEDNPEETAVYYLSRTTRNWALIVGLQPDTKYYVKVMAYNNA--GE 477
I R+ +E VY I L P + Y V Y
Sbjct: 143 IEDYYELLYRVFIINNSLEKEQKVY---EGAHRAVEIEALTPHSSYCVVAEIYQPMLDRR 199
Query: 478 GPESE 482
SE
Sbjct: 200 SQRSE 204
Score = 49.4 bits (117), Expect = 7e-07
Identities = 29/200 (14%), Positives = 57/200 (28%), Gaps = 23/200 (11%)
Query: 393 APQGV--FSRGFNSTAINVTWNPIELIRENIRGRLIGHRIKYWKEDNPEETAVYYLSRTT 450
PQ V SR F++ + W P + G + ++Y + T
Sbjct: 10 KPQRVQFQSRNFHNI---LQWQPGR----ALTGNSSVYFVQYKIYGQRQWKNKEDCWGTQ 62
Query: 451 RNWALI--VGLQPDTKYYVKVMAYNNAGEGPESERYLERTYRKAPQKPPSAVHIKGINPT 508
+ YY +V A + S + + PP +
Sbjct: 63 ELSCDLTSETSDIQEPYYGRVRAASAGSYSEWSMTPRFTPWWETKIDPPVMNITQVNGSL 122
Query: 509 TVHVTW--------RYVSPSFEEEPIIGYKVRVWEVDQDMSRANDTIIPVGNTLDADIVD 560
V + + + S E+ + Y+V + + + + G +I
Sbjct: 123 LVILHAPNLPYRYQKEKNVSIEDYYELLYRVFIINNSLE----KEQKVYEGAHRAVEIEA 178
Query: 561 LSPGKRYHMRVLAFSNGGDG 580
L+P Y + + D
Sbjct: 179 LTPHSSYCVVAEIYQPMLDR 198
Score = 49.0 bits (116), Expect = 1e-06
Identities = 30/223 (13%), Positives = 60/223 (26%), Gaps = 35/223 (15%)
Query: 177 EGPPGLPGGVQVVEVHKTSATIQWTDGATNGRPITHYKIIARTNWNSTWFNVSEHVIGKE 236
P VQ + +QW G + Y + + W N +
Sbjct: 5 THESLKPQRVQFQSRN-FHNILQWQPGRALTGNSSVYFVQYKIYGQRQWKNKEDCW---- 59
Query: 237 VDRYTGRKEASIENV-LVPWSTYEFKVIA---GNELGYGEPSSPSPQYNTPADKPYQAPS 292
T + + Y +V A G+ + +P + T D P +
Sbjct: 60 ---GTQELSCDLTSETSDIQEPYYGRVRAASAGSYSEWSMTPRFTPWWETKIDPPVMNIT 116
Query: 293 RIGGGGGKIGDLSISWEPLPREKQNAP----------NIYYKIFWRKKNDTEFQSETLKE 342
++ G L + + + Y++F N E + + +
Sbjct: 117 QVN------GSLLVILHAPNLPYRYQKEKNVSIEDYYELLYRVFII-NNSLEKEQKVYEG 169
Query: 343 YGNVGIAVVRIPSEFYYTEYEVKVQAINDV--GPGPESEVVTI 383
V I + ++ Y V + + SE +
Sbjct: 170 AHR----AVEIEALTPHSSYCVVAEIYQPMLDRRSQRSEERCV 208
>2erj_C Cytokine receptor common gamma chain; immune system-cytok complex;
HET: NAG FUC BMA; 3.00A {Homo sapiens} SCOP: b.1.2.1
b.1.2.1
Length = 247
Score = 59.4 bits (143), Expect = 5e-10
Identities = 30/243 (12%), Positives = 62/243 (25%), Gaps = 17/243 (6%)
Query: 359 YTEYEVKVQAINDVGPGPESEVVTIFSAEDMPQVAPQGVFSRGFNSTAINVTWNPIELIR 418
+ D + + + V FN +N TW
Sbjct: 6 LNTTILTPNGNEDTTAD-FFLTTMPTDSLSVSTLPLPEVQCFVFNVEYMNCTWQSSSE-- 62
Query: 419 ENIRGRLIGHRIKYWKEDNPEETAVYYLSRTTRNWALIVGLQPDTKYYVKVMAYNNAGEG 478
+ + K D ++ + Y S + + + V +
Sbjct: 63 PQPTNLTLHYWYKNSDNDKVQKCSHYLFSEEITSGCQLQKKEIHLYQTFVVQLQDPREPR 122
Query: 479 PESERYLERTYRKAPQKPPSAVHIKGINPTTVHVTWRYVSPSFEEEPIIGYKVRVWEVDQ 538
++ + L+ P P + + ++ + + + W + + + V+
Sbjct: 123 RQATQMLKLQNLVIP-WAPENLTLHKLSESQLELNWNNRFLNH----CLEHLVQYRTDWD 177
Query: 539 DMSRANDTIIPVGNTLDADIVDLSPGKRYHMRV---LAFSNGGDGRMS--SPAITFQMGE 593
T V + + KRY RV G S S I +
Sbjct: 178 HSW----TEQSVDYRHKFSLPSVDGQKRYTFRVRSRFNPLCGSAQHWSEWSHPIHWGSNT 233
Query: 594 EKE 596
KE
Sbjct: 234 SKE 236
Score = 36.3 bits (83), Expect = 0.021
Identities = 29/253 (11%), Positives = 69/253 (27%), Gaps = 35/253 (13%)
Query: 142 GLLEITNAS-FADAGEYECVVKSTVGKISTKTTVIVEGPPGLPGGVQVVEVHKTSATIQW 200
G+L + N + G + + ++T T + VQ + W
Sbjct: 1 GMLSLLNTTILTPNGNEDT---TADFFLTTMPTDSLSVSTLPLPEVQCFVFNVEYMNCTW 57
Query: 201 TDG-ATNGRPITHYKIIARTNWNSTWFNVSEHVIGKEVDRYTGRKEASIE---NVLVPWS 256
+T + W+ S++ ++ Y +E +
Sbjct: 58 QSSSEPQPTNLTLH----------YWYKNSDNDKVQKCSHYLFSEEITSGCQLQKKEIHL 107
Query: 257 TYEFKVIAGNELGYGEPSSPSPQYNTPADKPYQAPSRIGGGGGKIGDLSISWEPLPREKQ 316
F V + ++ + P AP + L ++W +
Sbjct: 108 YQTFVVQLQDPREPRRQATQMLKL-QNLVIP-WAPENLTLHKLSESQLELNWNN----RF 161
Query: 317 NAPNIYYKIFWRKKNDTEFQSETLKEYGNVGIAVVRIPSEFYYTEYEVKVQAINDVGPGP 376
+ + + +R D + +++ +PS Y +V++ + G
Sbjct: 162 LNHCLEHLVQYRTDWDHSWTEQSVD-----YRHKFSLPSVDGQKRYTFRVRSRFNPLCGS 216
Query: 377 E------SEVVTI 383
S +
Sbjct: 217 AQHWSEWSHPIHW 229
>2edf_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 103
Score = 55.8 bits (135), Expect = 6e-10
Identities = 20/77 (25%), Positives = 28/77 (36%), Gaps = 8/77 (10%)
Query: 4 EGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGN---LLISPVSRDDSGIYSC 60
G +V + C A P W KD I + + G L+I S D+G Y+C
Sbjct: 22 PGEDVELRCELSRAGTP-VHWLKDRKAIRKSQKYDVVCEGTMAMLVIRGASLKDAGEYTC 80
Query: 61 TATNVHGMDESKGRLIV 77
+S L V
Sbjct: 81 EVEA----SKSTASLHV 93
Score = 44.2 bits (105), Expect = 7e-06
Identities = 24/107 (22%), Positives = 42/107 (39%), Gaps = 25/107 (23%)
Query: 88 PPKIT-------IAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINI- 139
P I +A +++LRC + V W + I ++ ++
Sbjct: 8 PAAIIKPLEDQWVAPGEDVELRCEL-SRAGTPV--HWLKDRKAI-------RKSQKYDVV 57
Query: 140 -DGGL--LEITNASFADAGEYECVVKSTVGKISTKTTVIVEGPPGLP 183
+G + L I AS DAGEY C V+++ + ++ VE P
Sbjct: 58 CEGTMAMLVIRGASLKDAGEYTCEVEAS----KSTASLHVEEKASGP 100
>2edk_A Myosin-binding protein C, fast-type; IG fold, fast MYBP-C,
C-protein, skeletal muscle fast- isoform, MYBPCF,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 101
Score = 55.4 bits (134), Expect = 6e-10
Identities = 17/82 (20%), Positives = 31/82 (37%), Gaps = 14/82 (17%)
Query: 4 EGGNVTIFCNPEAA-PKPKFVWKKDGNII----GSGGRRKIFENGN---LLISPVSRDDS 55
G V + E + + +W K+G + R + ++G L+ S V ++D
Sbjct: 22 VGDRVEMAV--EVSEEGAQVMWMKNGVELTREDSFKARYRFKKDGKRHILIFSDVVQEDR 79
Query: 56 GIYSCTATNVHGMDESKGRLIV 77
G Y + + LIV
Sbjct: 80 GRYQVITNG----GQCEAELIV 97
Score = 45.4 bits (108), Expect = 2e-06
Identities = 17/104 (16%), Positives = 30/104 (28%), Gaps = 17/104 (16%)
Query: 85 EQLPPKI-------TIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNI 137
P I + +++ E +W NGV + D +
Sbjct: 5 SSGPVLIVTPLEDQQVFVGDRVEMAVEVSEE---GAQVMWMKNGVELTREDSFKARY-RF 60
Query: 138 NIDGGL--LEITNASFADAGEYECVVKSTVGKISTKTTVIVEGP 179
DG L ++ D G Y+ + + +IVE
Sbjct: 61 KKDGKRHILIFSDVVQEDRGRYQVI----TNGGQCEAELIVEEK 100
>2ocf_D Fibronectin; estrogen receptor, LBD, monobody, estradiol,
hormone-growth complex; HET: CME EST; 2.95A {Homo
sapiens}
Length = 121
Score = 56.1 bits (135), Expect = 8e-10
Identities = 20/125 (16%), Positives = 44/125 (35%), Gaps = 12/125 (9%)
Query: 464 KYYVKVMAYNNAGEGPESERYLERTYRKAPQKPPSAVHIKGINPTTVHVTWRYVSPSFEE 523
++ Y + + E+ ++ + P+ + + PT++ ++W
Sbjct: 4 HHHHHSSDYKDDDDKGENL-----YFQGSVSDVPTKLEVVAATPTSLLISW---DAP--A 53
Query: 524 EPIIGYKVRVWEVDQDMSRANDTIIPVGNTLDADIVDLSPGKRYHMRVLAFSNGGDGRMS 583
+ Y++ E + T+ G+ A I L PG Y + V A +
Sbjct: 54 VTVRYYRITYGETGGNSPVQEFTV--PGSKSTATISGLKPGVDYTITVYAVTGLRLMLAG 111
Query: 584 SPAIT 588
S I+
Sbjct: 112 SKPIS 116
Score = 53.7 bits (129), Expect = 5e-09
Identities = 18/130 (13%), Positives = 37/130 (28%), Gaps = 13/130 (10%)
Query: 361 EYEVKVQAINDVGPGPESEVVTIFSAEDMPQVAPQGVFSRGFNSTAINVTWNPIELIREN 420
+ D E+ + P + T++ ++W+
Sbjct: 4 HHHHHSSDYKDDDDKGEN-----LYFQGSVSDVPTKLEVVAATPTSLLISWDAPA----- 53
Query: 421 IRGRLIGHRIKYWKEDNPEETAVYYLSRTTRNWALIVGLQPDTKYYVKVMAYNNAGEGPE 480
+ +RI Y + + + + A I GL+P Y + V A
Sbjct: 54 --VTVRYYRITYGETGGNSPVQEFTVPGSKST-ATISGLKPGVDYTITVYAVTGLRLMLA 110
Query: 481 SERYLERTYR 490
+ + YR
Sbjct: 111 GSKPISINYR 120
Score = 53.4 bits (128), Expect = 6e-09
Identities = 21/109 (19%), Positives = 31/109 (28%), Gaps = 12/109 (11%)
Query: 169 STKTTVIVEGPPGLPGGVQVVEVHKTSATIQWTDGATNGRPITHYKIIARTNWNSTWFNV 228
+ +P ++VV TS I W A + +Y+I ++ V
Sbjct: 18 KGENLYFQGSVSDVPTKLEVVAATPTSLLISWDAPAV---TVRYYRITYGETGGNSP--V 72
Query: 229 SEHVIGKEVDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPS 277
E + T I L P Y V A L S
Sbjct: 73 QEFTVPGSKSTAT------ISG-LKPGVDYTITVYAVTGLRLMLAGSKP 114
Score = 31.4 bits (71), Expect = 0.33
Identities = 16/83 (19%), Positives = 29/83 (34%), Gaps = 13/83 (15%)
Query: 304 LSISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETLKEYGNVGIAVVR--IPSEFYYTE 361
L ISW+ YY+I + + E G+ A + P +
Sbjct: 45 LLISWDAPA-----VTVRYYRITYGETGGNSPVQE-FTVPGSKSTATISGLKP----GVD 94
Query: 362 YEVKVQAINDVGPG-PESEVVTI 383
Y + V A+ + S+ ++I
Sbjct: 95 YTITVYAVTGLRLMLAGSKPISI 117
>3sbw_C Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-H1, programmed
death-1 ligand 1, complex, costimulatory, immune system;
2.28A {Homo sapiens} PDB: 3fn3_A 3bis_A 3bik_A
Length = 222
Score = 58.1 bits (140), Expect = 1e-09
Identities = 33/208 (15%), Positives = 62/208 (29%), Gaps = 36/208 (17%)
Query: 2 AGEGGNVTIFC----NPEAAPKP-KFVWKKDGNIIGS---------------GGRRKIFE 41
G N+TI C + W+ + I R ++ +
Sbjct: 13 VEYGSNMTIECKFPVEKQLDLAALIVYWEMEDKNIIQFVHGEEDLKVQHSSYRQRARLLK 72
Query: 42 ------NGNLLISPVSRDDSGIYSCTATNVHGMDESKGRLIVLHGPSYYEQLPPKITIAA 95
N L I+ V D+G+Y C + G D + + V P +
Sbjct: 73 DQLSLGNAALQITDVKLQDAGVYRCMISY-GGADYKRITVKVNA-PYNKINQRILVVDPV 130
Query: 96 HRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEIT---NASFA 152
+L C A +V IWT + + + T N + L +T +
Sbjct: 131 TSEHELTCQAEGYPKAEV--IWTSSD---HQVLSGKTTTTNSKREEKLFNVTSTLRINTT 185
Query: 153 DAGEYECVVKSTVGKISTKTTVIVEGPP 180
+ C + + + +++ P
Sbjct: 186 TNEIFYCTFRRLDPEENHTAELVIPELP 213
Score = 50.0 bits (119), Expect = 5e-07
Identities = 14/95 (14%), Positives = 30/95 (31%), Gaps = 8/95 (8%)
Query: 4 EGGNVTIFCNPEAAPKPKFVWKK-DGNIIGSGGRRKIFENGNLLIS-----PVSRDDSGI 57
+ C E PK + +W D ++ + L + ++ + I
Sbjct: 130 VTSEHELTCQAEGYPKAEVIWTSSDHQVLSGKTTTTNSKREEKLFNVTSTLRINTTTNEI 189
Query: 58 YSCTATNVHGMDESKGRLIVLHGPSYYEQLPPKIT 92
+ CT + + L++ P P + T
Sbjct: 190 FYCTFRRLDPEENHTAELVIPELPL--AHPPNERT 222
Score = 40.4 bits (94), Expect = 8e-04
Identities = 33/178 (18%), Positives = 56/178 (31%), Gaps = 35/178 (19%)
Query: 88 PPK-ITIAAHRNLQLRCS---AHTEELLDVAYIWTHNGVRI-----GNMDLNE------- 131
P + N+ + C +L + W I G DL
Sbjct: 7 PKDLYVVEYGSNMTIECKFPVEKQLDLAALIVYWEMEDKNIIQFVHGEEDLKVQHSSYRQ 66
Query: 132 ---LETPNINIDGGLLEITNASFADAGEYECVVKSTVGKISTKTTVIVEGPPGLPGGVQV 188
L +++ L+IT+ DAG Y C++ S G + TV V P +
Sbjct: 67 RARLLKDQLSLGNAALQITDVKLQDAGVYRCMI-SYGGADYKRITVKVNAPYNKINQRIL 125
Query: 189 VEVHKTS-------------ATIQWTDGATNGRPITHYKIIARTNWNSTWFNVSEHVI 233
V TS A + WT ++ + ++ + FNV+ +
Sbjct: 126 VVDPVTSEHELTCQAEGYPKAEVIWTS--SDHQVLSGKTTTTNSKREEKLFNVTSTLR 181
>1x44_A Myosin-binding protein C, SLOW-type; IG-like domain, SLOW-
type/skeletal muscle SLOW-isoform, structural genomics,
NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4
Length = 103
Score = 54.6 bits (132), Expect = 1e-09
Identities = 20/79 (25%), Positives = 30/79 (37%), Gaps = 10/79 (12%)
Query: 4 EGGNVTIFCNPEAAPKPKFVWKKDGNIIGSG--GRRKIFENGN---LLISPVSRDDSGIY 58
G V + C + W K+G I G R +I G L+I ++ D+ Y
Sbjct: 21 CGERVELECEV-SEDDANVKWFKNGEEIIPGPKSRYRIRVEGKKHILIIEGATKADAAEY 79
Query: 59 SCTATNVHGMDESKGRLIV 77
S T +S +L V
Sbjct: 80 SVMTTG----GQSSAKLSV 94
Score = 44.2 bits (105), Expect = 6e-06
Identities = 17/71 (23%), Positives = 25/71 (35%), Gaps = 9/71 (12%)
Query: 117 WTHNGVRIGNMDLNELETPNINIDGGL--LEITNASFADAGEYECVVKSTVGKISTKTTV 174
W NG I + I ++G L I A+ ADA EY + + +
Sbjct: 40 WFKNGEEIIPGPKSRYR---IRVEGKKHILIIEGATKADAAEYSVM----TTGGQSSAKL 92
Query: 175 IVEGPPGLPGG 185
V+ G G
Sbjct: 93 SVDLKSGPSSG 103
>2e7b_A Obscurin; IG-like domain, structural genomics, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens} PDB: 2yz8_A
Length = 103
Score = 54.6 bits (132), Expect = 1e-09
Identities = 22/84 (26%), Positives = 34/84 (40%), Gaps = 8/84 (9%)
Query: 2 AGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGN---LLISPVSRDDSGIY 58
EGG T+ C + P W N++ G + + + G L++ + DSG Y
Sbjct: 20 VLEGGAATLRCVLSSVAAP-VKWCYGNNVLRPGDKYSLRQEGAMLELVVRNLRPQDSGRY 78
Query: 59 SCTATNVHGMDESKGRLIVLHGPS 82
SC+ G + L V PS
Sbjct: 79 SCSF----GDQTTSATLTVTALPS 98
Score = 46.9 bits (112), Expect = 6e-07
Identities = 14/72 (19%), Positives = 24/72 (33%), Gaps = 15/72 (20%)
Query: 116 IWTHNGVRIGNMDLNELETPNINI--DGGL--LEITNASFADAGEYECVVKSTVGKISTK 171
W + + ++ +G + L + N D+G Y C G +T
Sbjct: 40 KWCYGNNVL-------RPGDKYSLRQEGAMLELVVRNLRPQDSGRYSCS----FGDQTTS 88
Query: 172 TTVIVEGPPGLP 183
T+ V P P
Sbjct: 89 ATLTVTALPSGP 100
>2dmk_A Midline 2 isoform 2; midline defect 2, tripartite motif protein 1,
midin-2, ring finger protein 60, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 127
Score = 55.3 bits (133), Expect = 2e-09
Identities = 17/116 (14%), Positives = 37/116 (31%), Gaps = 8/116 (6%)
Query: 178 GPPGLPGGVQVVEVHKTSATIQWTDGATNGRPITHYKIIARTNWNSTWFNVSEHVIGKEV 237
PP + ++ + T+ W + I+ Y++ F + + +
Sbjct: 17 NPPSIR--EELCTASHDTITVHWISD--DEFSISSYELQYTIFTGQANFISLYNSVDSWM 72
Query: 238 DRYTGRK-EASIENVLVPWSTYEFKVIAGNELGYGEPSSPSPQYNTPADKPYQAPS 292
++ ++ L + Y F V A N+ G + T + PS
Sbjct: 73 IVPNIKQNHYTVHG-LQSGTRYIFIVKAINQAGSRNSEPTRLK--TNSQPFKSGPS 125
Score = 45.7 bits (108), Expect = 3e-06
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 22/136 (16%)
Query: 374 PGPESEVVTIFSAEDMPQVAPQGVFSRGFNSTAINVTWNP----------IELIRENIRG 423
G E + +A + P + + + + I V W ++ +
Sbjct: 3 SGSSGEGLDYLTAPNPPSIREELCTA---SHDTITVHWISDDEFSISSYELQYTIFTGQA 59
Query: 424 RLIGHRIKYWKEDNPEETAVYYLSRTTRNWALIVGLQPDTKYYVKVMAYNNAGEGPESER 483
+ + + +N + GLQ T+Y V A N AG SE
Sbjct: 60 N--------FISLYNSVDSWMIVPNIKQNHYTVHGLQSGTRYIFIVKAINQAG-SRNSEP 110
Query: 484 YLERTYRKAPQKPPSA 499
+T + + PS+
Sbjct: 111 TRLKTNSQPFKSGPSS 126
Score = 43.0 bits (101), Expect = 3e-05
Identities = 24/118 (20%), Positives = 35/118 (29%), Gaps = 14/118 (11%)
Query: 476 GEGPESERYLERTYRKAPQKPPSAVHIKGINPTTVHVTWRYVSPSFEEEPIIGYKV---- 531
G S L Y AP P + + T+ V W I Y++
Sbjct: 1 GSSGSSGEGL--DYLTAPNPPSIREELCTASHDTITVHWISDDEF----SISSYELQYTI 54
Query: 532 ---RVWEVDQDMSRANDTIIPVGNTLDADIVDLSPGKRYHMRVLAFSNGGDGRMSSPA 586
+ + S + I+P + L G RY V A + G S P
Sbjct: 55 FTGQANFISLYNSVDSWMIVPNIKQNHYTVHGLQSGTRYIFIVKAINQAGSRN-SEPT 111
Score = 33.0 bits (75), Expect = 0.082
Identities = 15/98 (15%), Positives = 27/98 (27%), Gaps = 13/98 (13%)
Query: 304 LSISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETLKEYGNVGIAVVRIPSEFY----- 358
+++ W Y++ + + + V I Y
Sbjct: 33 ITVHWIS----DDEFSISSYELQYTIFTGQANFISLYNSVDSW-MIVPNIKQNHYTVHGL 87
Query: 359 --YTEYEVKVQAINDVGPGPESEVVTIFSAEDMPQVAP 394
T Y V+AIN G SE + + + P
Sbjct: 88 QSGTRYIFIVKAINQAG-SRNSEPTRLKTNSQPFKSGP 124
>1eer_B Epobp, erythropoietin receptor; signal transduction, hematopoietic
cytokine, cytokine receptor class 1, complex
(cytokine/receptor); 1.90A {Homo sapiens} SCOP: b.1.2.1
b.1.2.1 PDB: 1cn4_A 2jix_B 1eba_A* 1ern_A 1ebp_A
Length = 227
Score = 57.0 bits (137), Expect = 2e-09
Identities = 28/187 (14%), Positives = 51/187 (27%), Gaps = 17/187 (9%)
Query: 303 DLSISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSE--TLKEYGNVGIAVVRIPSEFY-- 358
DL WE Y ++ +++ +P+
Sbjct: 36 DLVCFWEE--AASAGVGPGQYSFSYQLEDEPWKLCRLHQAPTARGAVRFWCSLPTADTSS 93
Query: 359 YTEYEVKVQAINDVGPGPESEVVTIFSAEDMPQVAPQGV-FSRGFNSTAINVTWNPIELI 417
+ E++V A + G I E + AP G+ S + + W P
Sbjct: 94 FVPLELRVTAAS----GAPRYHRVIHINEVVLLDAPVGLVARLADESGHVVLRWLPP--- 146
Query: 418 RENIRGRLIGHRIKYWKEDNPEETAVYYLSRTTRNWALIVGLQPDTKYYVKV--MAYNNA 475
E I + + + R ++ L+ T+Y V +
Sbjct: 147 PETPMTSHIRYEVDVSAGQGAGSVQRVEIL-EGRTECVLSNLRGRTRYTFAVRARMAEPS 205
Query: 476 GEGPESE 482
G SE
Sbjct: 206 FGGFWSE 212
Score = 53.2 bits (127), Expect = 5e-08
Identities = 31/230 (13%), Positives = 56/230 (24%), Gaps = 24/230 (10%)
Query: 373 GPGPESEVVTIFSAEDMPQVAPQGV--FSRGFNSTAINVTWNPIELIRENIRGRLIGHRI 430
P P + A + P+ + F+ + W + +
Sbjct: 3 FPPPNPDPKFESKAALLAARGPEELLCFTERLED--LVCFWEE----AASAGVGPGQYSF 56
Query: 431 KYWKEDNPEETA----VYYLSRTTRNWALI--VGLQPDTKYYVKVMAYNNAGEGPESERY 484
Y ED P + R W + ++V A + A R
Sbjct: 57 SYQLEDEPWKLCRLHQAPTARGAVRFWCSLPTADTSSFVPLELRVTAASGAPR---YHRV 113
Query: 485 LERTYRKAPQKPPSAVHIKGINPTTVHVTWRYVSPSFEEEPIIGYKVRVWEVDQDMSRAN 544
+ P V V + W P I Y+V V + +
Sbjct: 114 IHINEVVLLDAPVGLVARLADESGHVVLRWLP-PPETPMTSHIRYEVDVSAGQG--AGSV 170
Query: 545 DTIIPVGNTLDADIVDLSPGKRYHMRVLAFSNGGDGRMS----SPAITFQ 590
+ + + + +L RY V A S ++
Sbjct: 171 QRVEILEGRTECVLSNLRGRTRYTFAVRARMAEPSFGGFWSEWSEPVSLL 220
Score = 50.1 bits (119), Expect = 6e-07
Identities = 27/218 (12%), Positives = 54/218 (24%), Gaps = 17/218 (7%)
Query: 179 PPGLPGGVQVVEVHKTSATIQWTDGATNGRPITHYKII-ARTNWNSTWFNVSEHVIGKEV 237
P + W + A+ G Y + + + +
Sbjct: 20 AARGPEELLCFTERLEDLVCFWEEAASAGVGPGQYSFSYQLEDEPWKLCRLHQAPTARGA 79
Query: 238 DRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPSPQYNTPADKPYQAPSRIGGG 297
R+ + + E +V A + G P + +
Sbjct: 80 VRFWCSLPTA---DTSSFVPLELRVTAAS----GAPRYHRVIHINEVVLLDAPVGLVARL 132
Query: 298 GGKIGDLSISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETLKEYGNVGIAVVRIPSEF 357
+ G + + W P P E +I Y++ G + +
Sbjct: 133 ADESGHVVLRWLP-PPETPMTSHIRYEVDVSAGQGAGSVQRVEILEGRT---ECVLSNLR 188
Query: 358 YYTEYEVKVQAINDVGP-----GPESEVVTIFSAEDMP 390
T Y V+A SE V++ + D+
Sbjct: 189 GRTRYTFAVRARMAEPSFGGFWSEWSEPVSLLTPSDLD 226
>1j8k_A Fibronectin; EDA, TYPEIII domain, protein binding; NMR {Homo
sapiens} SCOP: b.1.2.1
Length = 94
Score = 52.8 bits (127), Expect = 5e-09
Identities = 16/93 (17%), Positives = 32/93 (34%), Gaps = 10/93 (10%)
Query: 496 PPSAVHIKGINPTTVHVTWRYVSPSFEEEPIIGYKVRVWEVDQDMSRANDTIIPVGNTLD 555
P + ++ ++ + W + Y+V + + P G
Sbjct: 4 RPKGLAFTDVDVDSIKIAWESPQG-----QVSRYRVTYSSPEDGIHEL--FPAPDGEEDT 56
Query: 556 ADIVDLSPGKRYHMRVLAFSNGGDGRMSSPAIT 588
A++ L PG Y + V+A + + S P I
Sbjct: 57 AELQGLRPGSEYTVSVVALHDDME---SQPLIG 86
Score = 52.0 bits (125), Expect = 8e-09
Identities = 16/87 (18%), Positives = 35/87 (40%), Gaps = 8/87 (9%)
Query: 393 APQGVFSRGFNSTAINVTWNPIELIRENIRGRLIGHRIKYWKEDNPEETAVYYLSRTTRN 452
P+G+ + +I + W + G++ +R+ Y ++
Sbjct: 4 RPKGLAFTDVDVDSIKIAWESPQ-------GQVSRYRVTYSSPEDGIHELFPAPDGEEDT 56
Query: 453 WALIVGLQPDTKYYVKVMAYNNAGEGP 479
A + GL+P ++Y V V+A ++ E
Sbjct: 57 -AELQGLRPGSEYTVSVVALHDDMESQ 82
Score = 47.0 bits (112), Expect = 6e-07
Identities = 17/93 (18%), Positives = 32/93 (34%), Gaps = 12/93 (12%)
Query: 183 PGGVQVVEVHKTSATIQWTDGATNGRPITHYKIIARTNWNSTWFNVSEHVIGKEVDRYTG 242
P G+ +V S I W + G ++ Y++ + + E D
Sbjct: 5 PKGLAFTDVDVDSIKIAWE--SPQG-QVSRYRVTYSSPEDGIH--ELFPAPDGEEDTAE- 58
Query: 243 RKEASIENVLVPWSTYEFKVIAGNELGYGEPSS 275
++ L P S Y V+A ++ +P
Sbjct: 59 -----LQG-LRPGSEYTVSVVALHDDMESQPLI 85
Score = 31.2 bits (71), Expect = 0.19
Identities = 18/89 (20%), Positives = 34/89 (38%), Gaps = 15/89 (16%)
Query: 304 LSISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETLKEYGNVGIAVVR--IPSEFYYTE 361
+ I+WE P Y++ + D + + G A ++ P +E
Sbjct: 18 IKIAWES-P----QGQVSRYRVTYSSPEDGIHELFPAPD-GEEDTAELQGLRP----GSE 67
Query: 362 YEVKVQAINDVGPGPESEVVTIFSAEDMP 390
Y V V A++D ES+ + + +P
Sbjct: 68 YTVSVVALHDDM---ESQPLIGTQSTAIP 93
>2cum_A Tenascin-X; hexabrachion-like, fibronectin type III domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
b.1.2.1
Length = 105
Score = 52.8 bits (127), Expect = 7e-09
Identities = 17/93 (18%), Positives = 27/93 (29%), Gaps = 9/93 (9%)
Query: 496 PPSAVHIKGINPTTVHVTWRYVSPSFEEEPIIGYKVRVWEVDQDMSRANDTIIPVGNTLD 555
P + K + P T +TW GY + I+ G
Sbjct: 10 APRDLEAKEVTPRTALLTWTEPPV-----RPAGYLLSFHTPGGQTQ----EILLPGGITS 60
Query: 556 ADIVDLSPGKRYHMRVLAFSNGGDGRMSSPAIT 588
++ L P Y+ R+ A S + T
Sbjct: 61 HQLLGLFPSTSYNARLQAMWGQSLLPPVSTSFT 93
Score = 48.2 bits (115), Expect = 3e-07
Identities = 14/90 (15%), Positives = 29/90 (32%), Gaps = 10/90 (11%)
Query: 393 APQGVFSRGFNSTAINVTWNPIELIRENIRGRLIGHRIKYWKEDNPEETAVYYLSRTTRN 452
AP+ + ++ +TW R G+ + + + + T+
Sbjct: 10 APRDLEAKEVTPRTALLTWTEP-------PVRPAGYLLSFHTPGGQTQEILLPGGITS-- 60
Query: 453 WALIVGLQPDTKYYVKVMAYNNAGEGPESE 482
++GL P T Y ++ A P
Sbjct: 61 -HQLLGLFPSTSYNARLQAMWGQSLLPPVS 89
Score = 45.5 bits (108), Expect = 2e-06
Identities = 17/95 (17%), Positives = 32/95 (33%), Gaps = 14/95 (14%)
Query: 183 PGGVQVVEVHKTSATIQWTDGATNGRPITHYKIIARTNWNSTWFNVSEHVIGKEVDRYTG 242
P ++ EV +A + WT+ Y + T T E ++ + +
Sbjct: 11 PRDLEAKEVTPRTALLTWTEPPV---RPAGYLLSFHTPGGQTQ----EILLPGGITSHQ- 62
Query: 243 RKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPS 277
+ L P ++Y ++ A P S S
Sbjct: 63 -----LLG-LFPSTSYNARLQAMWGQSLLPPVSTS 91
Score = 28.6 bits (64), Expect = 2.3
Identities = 8/37 (21%), Positives = 13/37 (35%), Gaps = 2/37 (5%)
Query: 359 YTEYEVKVQAINDVGPGPESEVVTIFSAEDMPQVAPQ 395
T Y ++QA+ P T F+ + P
Sbjct: 69 STSYNARLQAMWGQSLLPPVS--TSFTTGGLRISGPS 103
>2b5i_C Cytokine receptor common gamma chain; four-helix bundle,
fibronectin domain, cytokine-cytokine REC complex; HET:
NAG; 2.30A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 PDB:
3bpl_C* 3qb7_C* 3qaz_C*
Length = 199
Score = 55.1 bits (132), Expect = 8e-09
Identities = 18/167 (10%), Positives = 58/167 (34%), Gaps = 12/167 (7%)
Query: 303 DLSISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETLKEYGNVGIAVVRIPSEFYYTEY 362
++ +W+ + N+ +++ ++ + Q + + + ++ + +
Sbjct: 14 YMNCTWQS--SSEPQPTNLTLHYWYKNSDNDKVQKCSHYLFSEEITSGCQLQKKEIHLYQ 71
Query: 363 EVKVQAINDVGPGPESEVVTIFSAEDMPQVAPQGVFSRGFNSTAINVTWNPIELIRENIR 422
VQ + P ++ + +P AP+ + + + + + WN
Sbjct: 72 TFVVQLQDPREPRRQATQMLKLQNLVIPW-APENLTLHKLSESQLELNWNN------RFL 124
Query: 423 GRLIGHRIKYWKEDNPEETAVYYLSRTTRNWALIVGLQPDTKYYVKV 469
+ H ++Y + + T S R+ + + +Y +V
Sbjct: 125 NHCLEHLVQYRTDWDHSWTEQ---SVDYRHKFSLPSVDGQKRYTFRV 168
Score = 55.1 bits (132), Expect = 8e-09
Identities = 28/200 (14%), Positives = 56/200 (28%), Gaps = 16/200 (8%)
Query: 402 FNSTAINVTWNPIELIRENIRGRLIGHRIKYWKEDNPEETAVYYLSRTTRNWALIVGLQP 461
FN +N TW + + K D ++ + Y S + + +
Sbjct: 10 FNVEYMNCTWQSSSE--PQPTNLTLHYWYKNSDNDKVQKCSHYLFSEEITSGCQLQKKEI 67
Query: 462 DTKYYVKVMAYNNAGEGPESERYLERTYRKAPQKPPSAVHIKGINPTTVHVTWRYVSPSF 521
V + ++ + L+ P P + + ++ + + + W +
Sbjct: 68 HLYQTFVVQLQDPREPRRQATQMLKLQNLVIP-WAPENLTLHKLSESQLELNWNNRFLNH 126
Query: 522 EEEPIIGYKVRVWEVDQDMSRANDTIIPVGNTLDADIVDLSPGKRYHMRV---LAFSNGG 578
+ + V+ T V + + KRY RV G
Sbjct: 127 ----CLEHLVQYRTDWDHSW----TEQSVDYRHKFSLPSVDGQKRYTFRVRSRFNPLCGS 178
Query: 579 DGRMS--SPAITFQMGEEKE 596
S S I + KE
Sbjct: 179 AQHWSEWSHPIHWGSNTSKE 198
Score = 31.3 bits (70), Expect = 0.68
Identities = 16/120 (13%), Positives = 39/120 (32%), Gaps = 16/120 (13%)
Query: 161 VKSTVGKISTKTTVIVEGP---PGLPGGVQVVEVHKTSATIQWTDGATNGRPITHYKIIA 217
++ T ++ P P + + ++ ++ + W + + +
Sbjct: 77 LQDPREPRRQATQMLKLQNLVIPWAPENLTLHKLSESQLELNWNN--RFLNHCLEHLVQY 134
Query: 218 RTNWNSTWFNVSEHVIGKEVDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPS 277
RT+W+ +W S R + S+ + + Y F+V + G S
Sbjct: 135 RTDWDHSWTEQSV----------DYRHKFSLPS-VDGQKRYTFRVRSRFNPLCGSAQHWS 183
>4doh_B Interleukin-20 receptor subunit beta; IL10 family cytokine receptor
complex, alpha helical cytokin beta sandwhich receptor
fold, signaling complex; HET: NAG; 2.80A {Homo sapiens}
Length = 206
Score = 55.1 bits (132), Expect = 9e-09
Identities = 21/187 (11%), Positives = 51/187 (27%), Gaps = 16/187 (8%)
Query: 306 ISWEPLPREKQNAP-NIYYKIFWRKKNDTEFQSETLKEYGNVGIAVVRIPSEF-YYTEYE 363
+ W P+ + ++ Y+ + + T + + Y
Sbjct: 24 LMWSPVIAPGETVYYSVEYQGEY-ESLYTSHIWIPSSWCSLTEGPECDVTDDITATVPYN 82
Query: 364 VKVQAINDVGPGPESEVVTIFSAEDMPQVAPQGVFSRGFNSTAINVTWNPIELIRENIRG 423
++V+A S + + G+ + + + + G
Sbjct: 83 LRVRATLGSQTSAWSILKH-PFNRQSTILTRPGMEITK-DGFHLVIELEDL--------G 132
Query: 424 RLIGHRIKYWKEDNPEETAVYYLSRTTRNWALIVGLQPDTKYYVKVMAYNNA--GEGPES 481
+ YW+ + E V + R+ + ++P Y VK + A S
Sbjct: 133 PQFEFLVAYWRREPGAEEHVKMV-RSGGIPVHLETMEPGAAYCVKAQTFVKAIGRYSAFS 191
Query: 482 ERYLERT 488
+
Sbjct: 192 QTECVEV 198
Score = 50.8 bits (121), Expect = 2e-07
Identities = 30/208 (14%), Positives = 60/208 (28%), Gaps = 18/208 (8%)
Query: 183 PGGVQVVEVHKTSATIQWTDGATNGRPITHYKIIARTNWNSTWFNVSEHVIGKEVDRYTG 242
P + V+ + + W+ G +Y + + + S + S I T
Sbjct: 10 PQQLSVLSTN-MKHLLMWSPVIAPG-ETVYYSVEYQGEYESLY--TSHIWIPSSWCSLTE 65
Query: 243 RKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPSPQYNTPADKPYQAPSRIGGGGGKIG 302
E + + + Y +V A S +N + + I G +
Sbjct: 66 GPECDVTDDITATVPYNLRVRATLGSQTSAWSILKHPFNRQSTILTRPGMEITKDGFHL- 124
Query: 303 DLSISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETLKEYGNVGIAVVRIPSEFYYTEY 362
I E L + +WR++ E + ++ G V + + Y
Sbjct: 125 --VIELEDLG-----PQFEFLVAYWRREPGAEEHVKMVRSGGI----PVHLETMEPGAAY 173
Query: 363 EVKVQAINDV--GPGPESEVVTIFSAED 388
VK Q S+ + +
Sbjct: 174 CVKAQTFVKAIGRYSAFSQTECVEVQGE 201
Score = 49.3 bits (117), Expect = 7e-07
Identities = 26/194 (13%), Positives = 53/194 (27%), Gaps = 22/194 (11%)
Query: 393 APQGVFSRGFNSTAINVTWNPIELIRENIRGRLIGHRIKYWKEDNPEETA-----VYYLS 447
APQ + N + + W+P+ E + + ++Y E T+ + S
Sbjct: 9 APQQLSVLSTNMKHL-LMWSPVIAPGETV-----YYSVEYQGEYESLYTSHIWIPSSWCS 62
Query: 448 RTTRNW-ALIVGLQPDTKYYVKVMAYNNAGEGPESERYLERTYRKAPQKPPSAVHIKGIN 506
T + + Y ++V A + S + P I
Sbjct: 63 LTEGPECDVTDDITATVPYNLRVRATLGSQTSAWSILKHPFNRQSTILTRPG----MEIT 118
Query: 507 PTTVHVTWRYVSPSFEEEPIIGYKVRVWEVDQDMSRANDTIIPVGNTLDADIVDLSPGKR 566
H+ P + V W ++ + + + + PG
Sbjct: 119 KDGFHLVIELEDL----GPQFEFLVAYWR--REPGAEEHVKMVRSGGIPVHLETMEPGAA 172
Query: 567 YHMRVLAFSNGGDG 580
Y ++ F
Sbjct: 173 YCVKAQTFVKAIGR 186
>2ekj_A Collagen alpha-1(XX) chain; KIAA1510, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 105
Score = 52.1 bits (125), Expect = 1e-08
Identities = 15/99 (15%), Positives = 24/99 (24%), Gaps = 12/99 (12%)
Query: 177 EGPPGLPGGVQVVEVHKTSATIQWTDGATNGRPITHYKIIARTNWNSTWFNVSEHVIGKE 236
P + + S + WT G + HY + +
Sbjct: 5 SSGRSPPSNLALASETPDSLQVSWT--PPLG-RVLHYWLTYAPASGLGP--EKSVSVPGA 59
Query: 237 VDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSS 275
T + + L + Y V A G E S
Sbjct: 60 RSHVT------LPD-LQAATKYRVLVSAIYAAGRSEAVS 91
Score = 51.7 bits (124), Expect = 1e-08
Identities = 21/107 (19%), Positives = 34/107 (31%), Gaps = 12/107 (11%)
Query: 393 APQGVFSRGFNSTAINVTWNPIELIRENIRGRLIGHRIKYWKEDNPEETAVYYLSRTTRN 452
P + ++ V+W P GR++ + + Y + +
Sbjct: 10 PPSNLALASETPDSLQVSWTPPL-------GRVLHYWLTYAPASGLGPEKSVSVPGARSH 62
Query: 453 WALIVGLQPDTKYYVKVMAYNNAGEGPESERYLERTYRKAPQKPPSA 499
+ LQ TKY V V A AG T + A PS+
Sbjct: 63 -VTLPDLQAATKYRVLVSAIYAAGRSEAV----SATGQTACPSGPSS 104
Score = 50.5 bits (121), Expect = 4e-08
Identities = 17/93 (18%), Positives = 32/93 (34%), Gaps = 7/93 (7%)
Query: 492 APQKPPSAVHIKGINPTTVHVTWRYVSPSFEEEPIIGYKVRVWEVDQDMSRANDTIIPVG 551
+ + PPS + + P ++ V+W +P ++ Y + +P G
Sbjct: 6 SGRSPPSNLALASETPDSLQVSW---TPP--LGRVLHYWLTYAPASGL-GPEKSVSVP-G 58
Query: 552 NTLDADIVDLSPGKRYHMRVLAFSNGGDGRMSS 584
+ DL +Y + V A G S
Sbjct: 59 ARSHVTLPDLQAATKYRVLVSAIYAAGRSEAVS 91
Score = 34.7 bits (80), Expect = 0.015
Identities = 14/90 (15%), Positives = 26/90 (28%), Gaps = 12/90 (13%)
Query: 304 LSISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETLKEYGNVGIAVVR--IPSEFYYTE 361
L +SW P ++Y + + + +++ G + T+
Sbjct: 24 LQVSWTP-----PLGRVLHYWLTYAPASGLG-PEKSVSVPGARSHVTLPDLQA----ATK 73
Query: 362 YEVKVQAINDVGPGPESEVVTIFSAEDMPQ 391
Y V V AI G + P
Sbjct: 74 YRVLVSAIYAAGRSEAVSATGQTACPSGPS 103
>2gi7_A GPVI protein; IG-like domains, blood clotting, cell adhesion; 2.40A
{Homo sapiens}
Length = 184
Score = 54.0 bits (130), Expect = 1e-08
Identities = 23/159 (14%), Positives = 47/159 (29%), Gaps = 21/159 (13%)
Query: 4 EGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTAT 63
VT+ C + +K + + + L I + R +G Y C+
Sbjct: 21 LEKPVTLRCQGPP-GVDLYRLEKLSS-------SRYQDQAVLFIPAMKRSLAGRYRCSYQ 72
Query: 64 NVHGMDESKGRLIVLHGPSYYE---QLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHN 120
N +L ++ + + P +++ ++ L+C +
Sbjct: 73 NGSLWSLPSDQLELVATGVFAKPSLSAQPGPAVSSGGDVTLQCQTRYG---FDQFALYKE 129
Query: 121 GVRIGNMDLNELETPNINIDGGLLEITNASFADAGEYEC 159
G D + P I + A +G Y C
Sbjct: 130 G------DPAPYKNPE-RWYRASFPIITVTAAHSGTYRC 161
Score = 44.0 bits (104), Expect = 3e-05
Identities = 14/64 (21%), Positives = 25/64 (39%), Gaps = 2/64 (3%)
Query: 4 EGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTAT 63
GG+VT+ C +F K+G+ + + + I V+ SG Y C +
Sbjct: 107 SGGDVTLQCQTRY-GFDQFALYKEGDPAPYKNPERWYR-ASFPIITVTAAHSGTYRCYSF 164
Query: 64 NVHG 67
+
Sbjct: 165 SSRD 168
>3teu_A Fibcon; FN3 domain, fibronectin TPYE III domain, consensus design,
S de novo protein; HET: DIO; 1.00A {Synthetic}
Length = 98
Score = 51.7 bits (124), Expect = 1e-08
Identities = 23/90 (25%), Positives = 35/90 (38%), Gaps = 8/90 (8%)
Query: 393 APQGVFSRGFNSTAINVTWNPIELIRENIRGRLIGHRIKYWKEDNPEETAVYYLSRTTRN 452
AP + T+I V+W P + G+RI Y + P E + ++ +
Sbjct: 4 APTDLQVTNVTDTSITVSWTPP-------SATITGYRITYTPSNGPGEPKELTVPPSSTS 56
Query: 453 WALIVGLQPDTKYYVKVMAYNNAGEGPESE 482
I GL P +Y V V A + E P
Sbjct: 57 -VTITGLTPGVEYVVSVYALKDNQESPPLV 85
Score = 50.5 bits (121), Expect = 4e-08
Identities = 22/95 (23%), Positives = 30/95 (31%), Gaps = 12/95 (12%)
Query: 183 PGGVQVVEVHKTSATIQWTDGATNGRPITHYKIIARTNWNSTWFNVSEHVIGKEVDRYTG 242
P +QV V TS T+ WT + IT Y+I + E + T
Sbjct: 5 PTDLQVTNVTDTSITVSWT--PPSA-TITGYRITYTPSNGPGE--PKELTVPPSSTSVT- 58
Query: 243 RKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPS 277
I L P Y V A + P +
Sbjct: 59 -----ITG-LTPGVEYVVSVYALKDNQESPPLVGT 87
Score = 48.2 bits (115), Expect = 2e-07
Identities = 17/93 (18%), Positives = 36/93 (38%), Gaps = 7/93 (7%)
Query: 496 PPSAVHIKGINPTTVHVTWRYVSPSFEEEPIIGYKVRVWEVDQDMSRANDTIIPVGNTLD 555
P+ + + + T++ V+W +P I GY++ + + +P ++
Sbjct: 4 APTDLQVTNVTDTSITVSW---TPP--SATITGYRITYTPSNGP-GEPKELTVP-PSSTS 56
Query: 556 ADIVDLSPGKRYHMRVLAFSNGGDGRMSSPAIT 588
I L+PG Y + V A + + T
Sbjct: 57 VTITGLTPGVEYVVSVYALKDNQESPPLVGTQT 89
Score = 30.9 bits (70), Expect = 0.26
Identities = 16/79 (20%), Positives = 27/79 (34%), Gaps = 12/79 (15%)
Query: 304 LSISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETLKEYGNVGIAVVR--IPSEFYYTE 361
+++SW P +A Y+I + N + + L + + P E
Sbjct: 18 ITVSWTP-----PSATITGYRITYTPSNGPG-EPKELTVPPSSTSVTITGLTP----GVE 67
Query: 362 YEVKVQAINDVGPGPESEV 380
Y V V A+ D P
Sbjct: 68 YVVSVYALKDNQESPPLVG 86
>3so5_A LIG-3, leucine-rich repeats and immunoglobulin-like DOMA protein 3;
structural genomics, joint center for struct genomics,
JCSG; HET: MLY MSE; 1.70A {Mus musculus}
Length = 112
Score = 51.2 bits (122), Expect = 3e-08
Identities = 16/87 (18%), Positives = 27/87 (31%), Gaps = 14/87 (16%)
Query: 5 GGNVTIFCNPEAAPKP--KFVWKKDGNII-----------GSGGRRKIFENGNLLISPVS 51
G +V+ C+ ++ F W D + + G + L + V
Sbjct: 25 GSDVSFTCSAASSSDSPMTFAWXXDNEALQDAEMENYAHLRAQGGELMEYTTILRLRNVE 84
Query: 52 RDDSGIYSCTATNVHGMDESKG-RLIV 77
G Y C +N G S L +
Sbjct: 85 FTSEGXYQCVISNHFGSSYSVXAXLTI 111
Score = 49.7 bits (118), Expect = 9e-08
Identities = 14/95 (14%), Positives = 34/95 (35%), Gaps = 6/95 (6%)
Query: 88 PPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLN-----ELETPNINIDGG 142
P + ++ CSA + + + W + + + ++ + +
Sbjct: 17 PETQSAIXGSDVSFTCSAASSSDSPMTFAWXXDNEALQDAEMENYAHLRAQGGELMEYTT 76
Query: 143 LLEITNASFADAGEYECVVKSTVGKI-STKTTVIV 176
+L + N F G Y+CV+ + G S + +
Sbjct: 77 ILRLRNVEFTSEGXYQCVISNHFGSSYSVXAXLTI 111
>1b6u_A KIR2DL3, P58 killer cell inhibitory receptor; natural killer cell,
HLA, major histocompatibility complex class I (MHC class
I); 3.00A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4
Length = 257
Score = 54.2 bits (130), Expect = 3e-08
Identities = 29/168 (17%), Positives = 49/168 (29%), Gaps = 22/168 (13%)
Query: 4 EGGNVTIFC--NPEAAPKPKFVWKKDGNIIGSGGRRKIFENG----NLLISPVSRDDSGI 57
V + C + F+ ++G + +G N I P+ +D +G
Sbjct: 20 SEETVILQCWSDVRFQ---HFLLHREGKFKDTLHLIGEHHDGVSKANFSIGPMMQDLAGT 76
Query: 58 YSCTATNVHGMDE----SKGRLIVLHGPSYYEQL--PPKITIAAHRNLQLRCSAHTEELL 111
Y C + H + S IV+ G L P T+ A ++ L CS+ +
Sbjct: 77 YRCYGSVTHSPYQLSAPSDPLDIVITGLYEKPSLSAQPGPTVLAGESVTLSCSSRSS--- 133
Query: 112 DVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEITNASFADAGEYEC 159
Y + G + G Y C
Sbjct: 134 YDMYHLSREGEAHERRFSA----GPKVNGTFQADFPLGPATHGGTYRC 177
Score = 41.1 bits (96), Expect = 6e-04
Identities = 18/113 (15%), Positives = 33/113 (29%), Gaps = 12/113 (10%)
Query: 4 EGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENG----NLLISPVSRDDSGIYS 59
G +VT+ C+ + + ++G NG + + P + G Y
Sbjct: 120 AGESVTLSCSSRS-SYDMYHLSREGEAHERRFSAGPKVNGTFQADFPLGPAT--HGGTYR 176
Query: 60 CTATNVHGMDESKGR-----LIVLHGPSYYEQLPPKITIAAHRNLQLRCSAHT 107
C + E + V PS P + + L +A
Sbjct: 177 CFGSFRDSPYEWSNSSDPLLVSVTGNPSNSWPSPTEPSSETGNPRHLHAAAEQ 229
>3m45_A Cell adhesion molecule 2; IG fold, dimer, disulfide bond,
glycoprotein, immunoglobulin membrane, transmembrane;
HET: NAG; 2.21A {Mus musculus}
Length = 108
Score = 51.0 bits (122), Expect = 4e-08
Identities = 19/90 (21%), Positives = 29/90 (32%), Gaps = 13/90 (14%)
Query: 4 EGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENG------------NLLISPVS 51
EGG + C + W +K + ++ +S VS
Sbjct: 20 EGGTAILTCRVDQNDNTSLQWSNPAQQTLYFDDKKALRDNRIELVRASWHELSISVSDVS 79
Query: 52 RDDSGIYSCTATNVHGMDESKGRLIVLHGP 81
D G Y+C+ + SK L VL P
Sbjct: 80 LSDEGQYTCSL-FTMPVKTSKAYLTVLGVP 108
Score = 45.6 bits (108), Expect = 3e-06
Identities = 18/109 (16%), Positives = 39/109 (35%), Gaps = 9/109 (8%)
Query: 78 LHGPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPN- 136
+ G L +T+ L C + + W++ + D + N
Sbjct: 3 VKGSQGQFPLTQNVTVVEGGTAILTCRVDQNDNTSLQ--WSNPAQQTLYFDDKKALRDNR 60
Query: 137 ---INIDGG--LLEITNASFADAGEYECVVKSTVGKISTKTTVIVEGPP 180
+ + +++ S +D G+Y C + T+ ++K + V G P
Sbjct: 61 IELVRASWHELSISVSDVSLSDEGQYTCSL-FTMPVKTSKAYLTVLGVP 108
>2dkm_A Collagen alpha-1(XX) chain; FN3 domain, KIAA1510, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 104
Score = 50.6 bits (121), Expect = 4e-08
Identities = 19/110 (17%), Positives = 32/110 (29%), Gaps = 10/110 (9%)
Query: 385 SAEDMPQVAPQGVFSRGFNSTAINVTWNPIELIRENIRGRLIGHRIKYWKEDNPEETAVY 444
S P P+ + +++TW P + ++ E
Sbjct: 3 SGSSGPLPPPRALTLAAVTPRTVHLTWQPSAGAT--------HYLVRCSPASPKGEEEER 54
Query: 445 YLSRTTRNWALIVGLQPDTKYYVKVMAYNNAGEGPESERYLERTYRKAPQ 494
+ R L+ GL+P Y V V + E+ RT P
Sbjct: 55 EVQ-VGRPEVLLDGLEPGRDYEVSVQSLRGPEGS-EARGIRARTPTSGPS 102
Score = 50.6 bits (121), Expect = 4e-08
Identities = 20/93 (21%), Positives = 32/93 (34%), Gaps = 8/93 (8%)
Query: 492 APQKPPSAVHIKGINPTTVHVTWRYVSPSFEEEPIIGYKVRVWEVDQDMSRANDTIIPVG 551
P PP A+ + + P TVH+TW+ Y VR + + VG
Sbjct: 7 GPLPPPRALTLAAVTPRTVHLTWQ------PSAGATHYLVRCSPASPK-GEEEEREVQVG 59
Query: 552 NTLDADIVDLSPGKRYHMRVLAFSNGGDGRMSS 584
+ + L PG+ Y + V +
Sbjct: 60 RP-EVLLDGLEPGRDYEVSVQSLRGPEGSEARG 91
Score = 47.1 bits (112), Expect = 6e-07
Identities = 22/119 (18%), Positives = 36/119 (30%), Gaps = 19/119 (15%)
Query: 169 STKTTVIVEGPPGLPGGVQVVEVHKTSATIQWTDGATNGRPITHYKIIARTNWNSTWFNV 228
S+ ++ P P + + V + + W THY +
Sbjct: 2 SSGSSG----PLPPPRALTLAAVTPRTVHLTWQ----PSAGATHYLV--------RCSPA 45
Query: 229 SEHVIGKEVDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPSPQYNTPADKP 287
S +E + GR E ++ L P YE V + E + TP P
Sbjct: 46 SPKGEEEEREVQVGRPEVLLDG-LEPGRDYEVSVQSLRGPEGSEARGIRAR--TPTSGP 101
Score = 27.5 bits (61), Expect = 4.7
Identities = 11/81 (13%), Positives = 27/81 (33%), Gaps = 13/81 (16%)
Query: 304 LSISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETLKEYGNVGIAVVR--IPSEFYYTE 361
+ ++W+P +A +Y + + + E + ++ P +
Sbjct: 25 VHLTWQP------SAGATHYLVRCSPASPKG-EEEEREVQVGRPEVLLDGLEP----GRD 73
Query: 362 YEVKVQAINDVGPGPESEVVT 382
YEV VQ++ +
Sbjct: 74 YEVSVQSLRGPEGSEARGIRA 94
>1gsm_A Madcam-1, mucosal addressin cell adhesion molecule-1; cell adhesion
protein, immunoglobulin fold, I-SET fold, cell adhesion
glycoprotein; 1.9A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4
PDB: 1bqs_A*
Length = 210
Score = 53.0 bits (126), Expect = 4e-08
Identities = 17/106 (16%), Positives = 32/106 (30%), Gaps = 6/106 (5%)
Query: 2 AGEGGNVTIFCNPE-AAPKPKFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSC 60
G + + C A W+ +G+ L + S +G C
Sbjct: 19 VALGASRQLTCRLACADRGASVQWRGLDTSLGAVQSDT--GRSVLTVRNASLSAAGTRVC 76
Query: 61 TATNVHGMDESKGRLIVLHGPSYYEQLPPKITIAAHRNLQLRCSAH 106
+ + +L+V P QL + ++ C+AH
Sbjct: 77 VGSCGGRTFQHTVQLLVYAFP---NQLTVSPAALVPGDPEVACTAH 119
Score = 38.3 bits (88), Expect = 0.003
Identities = 22/126 (17%), Positives = 37/126 (29%), Gaps = 12/126 (9%)
Query: 85 EQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLL 144
E P + +A + QL C + W +G + + +L
Sbjct: 11 EPPEPVVAVALGASRQLTCRL-ACADRGASVQWRGLDTSLGAVQSDT--------GRSVL 61
Query: 145 EITNASFADAGEYECVVKSTVGKISTKTTVIVEGPPGLPGGVQVVEVHKTSATIQWTDGA 204
+ NAS + AG CV ++V P V + + T A
Sbjct: 62 TVRNASLSAAGTRVCVGSCGGRTFQHTVQLLVYAFPNQL-TVSPAALVPGDPEVACT--A 118
Query: 205 TNGRPI 210
P+
Sbjct: 119 HKVTPV 124
>2cuh_A Tenascin-X; fibronectin type III domain, extracellular matrix,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
b.1.2.1
Length = 115
Score = 50.9 bits (122), Expect = 4e-08
Identities = 14/93 (15%), Positives = 26/93 (27%), Gaps = 9/93 (9%)
Query: 496 PPSAVHIKGINPTTVHVTWRYVSPSFEEEPIIGYKVRVWEVDQDMSRANDTIIPVGNTLD 555
P+ + + + W P + P+ Y ++V G+ +D
Sbjct: 10 GPTQLRALNLTEGFAVLHW---KPP--QNPVDTYDIQVTAPGAP----PLQAETPGSAVD 60
Query: 556 ADIVDLSPGKRYHMRVLAFSNGGDGRMSSPAIT 588
+ DL Y V +S T
Sbjct: 61 YPLHDLVLHTNYTATVRGLRGPNLTSPASITFT 93
Score = 47.8 bits (114), Expect = 5e-07
Identities = 14/118 (11%), Positives = 27/118 (22%), Gaps = 15/118 (12%)
Query: 393 APQGVFSRGFNSTAINVTWNPIELIRENIRGRLIGHRIKYWKEDNPEETAVYYLSRTTRN 452
P + + + W P + + + I+ P A S
Sbjct: 10 GPTQLRALNLTEGFAVLHWKPP-------QNPVDTYDIQVTAPGAPPLQAETPGSAVD-- 60
Query: 453 WALIVGLQPDTKYYVKVMAYNNAGEGPESERYLERTYRKAPQKPPSAVHIKGINPTTV 510
+ L T Y V + + P + K + P+
Sbjct: 61 -YPLHDLVLHTNYTATVRGLRGPNLTSPAS-----ITFTTGLEAPRDLEAKEVTPSGP 112
Score = 45.9 bits (109), Expect = 2e-06
Identities = 16/109 (14%), Positives = 31/109 (28%), Gaps = 16/109 (14%)
Query: 179 PPGLPGGVQVVEVHKTSATIQWTDGATNGRPITHYKIIARTNWNSTWFNVSEHVIGKEVD 238
P P ++ + + + A + W P+ Y I +
Sbjct: 7 GPDGPTQLRALNLTEGFAVLHWKPPQN---PVDTYDIQVTAPGAPPL----QAETPGSAV 59
Query: 239 RYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPSPQYNTPADKP 287
Y + + LV + Y V P+S + + T + P
Sbjct: 60 DYP------LHD-LVLHTNYTATVRGLRGPNLTSPASIT--FTTGLEAP 99
Score = 28.9 bits (65), Expect = 2.0
Identities = 17/109 (15%), Positives = 30/109 (27%), Gaps = 26/109 (23%)
Query: 304 LSISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETLKEYGNVGIAVVR--IPSEFYYTE 361
+ W+P P Y I Q+ET G+ + + T
Sbjct: 24 AVLHWKP-----PQNPVDTYDIQVTAPGAPPLQAET---PGSAVDYPLHDLVLH----TN 71
Query: 362 YEVKVQAINDVGPGPESEVVTIFSAEDMPQVAPQGVFSRGFNSTAINVT 410
Y V+ + +T + + P+ + A VT
Sbjct: 72 YTATVRGLRGPNLTS-PASITFTTGLEAPR-----------DLEAKEVT 108
>1ugn_A LIR1, leukocyte immunoglobulin-like receptor 1; immunoglobulin-like
folds, immune system; 1.80A {Homo sapiens} SCOP: b.1.1.4
b.1.1.4 PDB: 3d2u_D* 1g0x_A 1p7q_D 1ufu_A 1vdg_A 2gw5_A
2dyp_D 2otp_A 3q2c_A
Length = 198
Score = 52.1 bits (125), Expect = 7e-08
Identities = 26/165 (15%), Positives = 52/165 (31%), Gaps = 15/165 (9%)
Query: 4 EGGNVTIFC--NPEAAPKPKFVWKKDGNIIGSGGRR--KIFENGNLLISPVSRDDSGIYS 59
+G VT+ C E ++ ++ R ++ + G I ++ + +G Y
Sbjct: 18 QGSPVTLRCQGGQETQ---EYRLYREKKTAPWITRIPQELVKKGQFPIPSITWEHTGRYR 74
Query: 60 CTATNVHGM--DESKGRLIVLHGPSYYEQL--PPKITIAAHRNLQLRCSAHTEELLDVAY 115
C + + S +V+ G L P + + N+ L+C + +
Sbjct: 75 CYYGSDTAGRSESSDPLELVVTGAYIKPTLSAQPSPVVNSGGNVTLQCDSQVA---FDGF 131
Query: 116 IWTHNGVRIGNMDLNELETPNINIDGGLLEITNASFADAGEYECV 160
I G LN + + S + Y C
Sbjct: 132 ILCKEGEDEHPQCLNSQPHAR-GSSRAIFSVGPVSPSRRWWYRCY 175
Score = 42.1 bits (99), Expect = 1e-04
Identities = 15/68 (22%), Positives = 22/68 (32%), Gaps = 6/68 (8%)
Query: 4 EGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENG-----NLLISPVSRDDSGIY 58
GGNVT+ C+ F+ K+G + PVS Y
Sbjct: 114 SGGNVTLQCD-SQVAFDGFILCKEGEDEHPQCLNSQPHARGSSRAIFSVGPVSPSRRWWY 172
Query: 59 SCTATNVH 66
C A + +
Sbjct: 173 RCYAYDSN 180
Score = 30.2 bits (68), Expect = 1.4
Identities = 16/89 (17%), Positives = 22/89 (24%), Gaps = 15/89 (16%)
Query: 89 PKITIAAH--------RNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINID 140
PK T+ A + LRC E Y + E
Sbjct: 4 PKPTLWAEPGSVITQGSPVTLRCQGGQE---TQEYRLYREKKTAPWITRIPQELVKKGQ- 59
Query: 141 GGLLEITNASFADAGEYECVVKSTVGKIS 169
I + ++ G Y C S S
Sbjct: 60 ---FPIPSITWEHTGRYRCYYGSDTAGRS 85
>3qwq_B Adnectin; cell surface receptor, tyrosine kinase, glycoprotein,
adnect antitumor, drug, engineered binding protein; HET:
NAG BMA MAN FUC; 2.75A {Homo sapiens} PDB: 3qwr_D*
Length = 114
Score = 49.9 bits (119), Expect = 8e-08
Identities = 15/96 (15%), Positives = 31/96 (32%), Gaps = 8/96 (8%)
Query: 393 APQGVFSRGFNSTAINVTWNPIELIRENIRGRLIGHRIKYWKEDNPEETAVYYLSRTTRN 452
P+ + T++ ++W+ G +RI Y + + +
Sbjct: 6 VPRDLEVVAATPTSLLISWDSGR-------GSYQYYRITYGETGGNSPVQEFTVPGPVHT 58
Query: 453 WALIVGLQPDTKYYVKVMAYNNAGEGPESERYLERT 488
A I GL+P Y + V A + + +
Sbjct: 59 -ATISGLKPGVDYTITVYAVTDHKPHADGPHTYHES 93
Score = 47.6 bits (113), Expect = 5e-07
Identities = 17/92 (18%), Positives = 31/92 (33%), Gaps = 7/92 (7%)
Query: 496 PPSAVHIKGINPTTVHVTWRYVSPSFEEEPIIGYKVRVWEVDQDMSRANDTIIPVGNTLD 555
P + + PT++ ++W Y++ E + S + +P G
Sbjct: 6 VPRDLEVVAATPTSLLISW---DSG--RGSYQYYRITYGETGGN-SPVQEFTVP-GPVHT 58
Query: 556 ADIVDLSPGKRYHMRVLAFSNGGDGRMSSPAI 587
A I L PG Y + V A ++
Sbjct: 59 ATISGLKPGVDYTITVYAVTDHKPHADGPHTY 90
Score = 44.9 bits (106), Expect = 6e-06
Identities = 27/119 (22%), Positives = 37/119 (31%), Gaps = 19/119 (15%)
Query: 178 GPPGLPGGVQVVEVHKTSATIQWTDGATNGRPITHYKIIARTNWNSTWFNVSEHVIGKEV 237
G +P ++VV TS I W G +Y+I ++ V E + V
Sbjct: 2 GVSDVPRDLEVVAATPTSLLISWDSGRG---SYQYYRITYGETGGNSP--VQEFTVPGPV 56
Query: 238 DRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPSPQ-------YNTPADKPYQ 289
T I L P Y V A + + Y T DKP Q
Sbjct: 57 HTAT------ISG-LKPGVDYTITVYAVTDHKPHADGPHTYHESPISINYRTEIDKPSQ 108
Score = 28.7 bits (64), Expect = 2.4
Identities = 17/78 (21%), Positives = 26/78 (33%), Gaps = 12/78 (15%)
Query: 304 LSISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETLKEYGNVGIAVVR--IPSEFYYTE 361
L ISW+ YY+I + + E G V A + P +
Sbjct: 20 LLISWDS-----GRGSYQYYRITYGETGGNSPVQE-FTVPGPVHTATISGLKP----GVD 69
Query: 362 YEVKVQAINDVGPGPESE 379
Y + V A+ D P +
Sbjct: 70 YTITVYAVTDHKPHADGP 87
>1axi_B HGHBP, growth hormone receptor; complex (hormone-receptor), complex
(hormone-receptor) compl; 2.10A {Homo sapiens} SCOP:
b.1.2.1 b.1.2.1 PDB: 1a22_B 1kf9_B 1hwg_B 1hwh_B 3hhr_B
2aew_A
Length = 236
Score = 52.1 bits (124), Expect = 1e-07
Identities = 25/200 (12%), Positives = 56/200 (28%), Gaps = 10/200 (5%)
Query: 172 TTVIVEGPPGLPGGVQVVEVHKTSATIQWTDGATNGRPITHYKIIARTNWNSTWFNVSEH 231
+ G P + + + + WTD +G + ++
Sbjct: 22 NPGLKTNSSGEPKFTKCRSPERETFSCHWTDEVHHGTKNEGPIQLFY--TRRNTQEWTQE 79
Query: 232 VIGKEVDRYTGRKEASI-ENVLVPWSTYEFKVIAGNELGYGEPSSPSPQYNTPADKPYQA 290
G + Y K+ + + S
Sbjct: 80 WKECPDYVSAGENSCYFNSSFTSIAIPYCIKLTSNGGTVDEKCFSVDEIVQPDPPIALNW 139
Query: 291 PSRIGGGGGKIGDLSISWEP--LPREKQNAPNIYYKIFWRKKNDTEFQSETLKEYGNVGI 348
G D+ + WE ++ + Y++ +++ N+T++ K +
Sbjct: 140 TLLNVSLTGIHADIQVRWEAPRNADIQKGWMVLEYELQYKEVNETKW-----KMMDPILT 194
Query: 349 AVVRIPSEFYYTEYEVKVQA 368
V + S EYEV+V++
Sbjct: 195 TSVPVYSLKVDKEYEVRVRS 214
Score = 52.1 bits (124), Expect = 1e-07
Identities = 23/176 (13%), Positives = 54/176 (30%), Gaps = 15/176 (8%)
Query: 302 GDLSISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETLK--EYGNVGIAVVRIPSEF-- 357
S W ++F+ ++N E+ E + +Y + G S F
Sbjct: 44 ETFSCHWTD-EVHHGTKNEGPIQLFYTRRNTQEWTQEWKECPDYVSAGENSCYFNSSFTS 102
Query: 358 YYTEYEVKVQAINDVGPGPESEVVTIFSAEDMPQVAPQGV----FSRGFNSTAINVTWNP 413
Y +K+ + + + ++ S I V W
Sbjct: 103 IAIPYCIKLTSNGGTV---DEKCFSVDEIVQPDPPIALNWTLLNVSLTGIHADIQVRWEA 159
Query: 414 IELIRENIRGRLIGHRIKYWKEDNPEETAVYYLSRTTRNWALIVGLQPDTKYYVKV 469
++ + ++Y + + + + + T+ + L+ D +Y V+V
Sbjct: 160 PRNADIQKGWMVLEYELQYKEVNETKWKMMDPILTTSVP---VYSLKVDKEYEVRV 212
Score = 45.2 bits (106), Expect = 2e-05
Identities = 26/231 (11%), Positives = 61/231 (26%), Gaps = 15/231 (6%)
Query: 372 VGPGPESEVVTIFSAEDMPQVAPQGVFSRGFNSTAINVTWNPIELIRENIRGRL-IGHRI 430
+ P S + P+ R + W G + + +
Sbjct: 11 LSRAPWSLQSVNPGLKTNSSGEPKFTKCRSPERETFSCHWTDEVHHGTKNEGPIQLFYTR 70
Query: 431 KYWKEDNPEETAVYYLSRTTRNWALI--VGLQPDTKYYVKVMAYNNAGEGPESERYLERT 488
+ +E E N Y +K+ + + + E
Sbjct: 71 RNTQEWTQEWKECPDYVSAGENSCYFNSSFTSIAIPYCIKLTSNGGTVD-EKCFSVDEIV 129
Query: 489 YRKAPQKPPSAVHIKGINPTTVHVTWRYVSPSFEEEP----IIGYKVRVWEVDQDMSRAN 544
P + + + R+ +P + ++ Y+++ EV++
Sbjct: 130 QPDPPIALNWTLLNVSLTGIHADIQVRWEAPRNADIQKGWMVLEYELQYKEVNET----K 185
Query: 545 DTIIPVGNTLDADIVDLSPGKRYHMRVLAFSNGGDGRMS--SPAITFQMGE 593
++ T + L K Y +RV + G S + + +
Sbjct: 186 WKMMDPILTTSVPVYSLKVDKEYEVRVRSKQRNS-GNYGEFSEVLYVTLPQ 235
>3tes_A Tencon; fibronectin type III domain, FN3, consensus design, de
novo; 2.50A {Synthetic}
Length = 98
Score = 48.6 bits (116), Expect = 2e-07
Identities = 13/90 (14%), Positives = 30/90 (33%), Gaps = 8/90 (8%)
Query: 393 APQGVFSRGFNSTAINVTWNPIELIRENIRGRLIGHRIKYWKEDNPEETAVYYLSRTTRN 452
AP+ + ++ ++W + I+Y + + E + + R+
Sbjct: 4 APKNLVVSEVTEDSLRLSWTAPD-------AAFDSFMIQYQESEKVGEAINLTVPGSERS 56
Query: 453 WALIVGLQPDTKYYVKVMAYNNAGEGPESE 482
+ GL+P T+Y V +
Sbjct: 57 -YDLTGLKPGTEYTVSIYGVKGGHRSNPLS 85
Score = 48.2 bits (115), Expect = 3e-07
Identities = 13/89 (14%), Positives = 30/89 (33%), Gaps = 7/89 (7%)
Query: 496 PPSAVHIKGINPTTVHVTWRYVSPSFEEEPIIGYKVRVWEVDQDMSRANDTIIPVGNTLD 555
P + + + ++ ++W + ++ E ++ N T+ G+
Sbjct: 4 APKNLVVSEVTEDSLRLSWTAPD-----AAFDSFMIQYQESEKVGEAINLTV--PGSERS 56
Query: 556 ADIVDLSPGKRYHMRVLAFSNGGDGRMSS 584
D+ L PG Y + + G S
Sbjct: 57 YDLTGLKPGTEYTVSIYGVKGGHRSNPLS 85
Score = 45.1 bits (107), Expect = 3e-06
Identities = 15/93 (16%), Positives = 26/93 (27%), Gaps = 12/93 (12%)
Query: 183 PGGVQVVEVHKTSATIQWTDGATNGRPITHYKIIARTNWNSTWFNVSEHVIGKEVDRYTG 242
P + V EV + S + WT A + + I + + + Y
Sbjct: 5 PKNLVVSEVTEDSLRLSWT--APDA-AFDSFMIQYQESEKVGE--AINLTVPGSERSYD- 58
Query: 243 RKEASIENVLVPWSTYEFKVIAGNELGYGEPSS 275
+ L P + Y + P S
Sbjct: 59 -----LTG-LKPGTEYTVSIYGVKGGHRSNPLS 85
Score = 28.2 bits (63), Expect = 2.7
Identities = 12/80 (15%), Positives = 24/80 (30%), Gaps = 12/80 (15%)
Query: 304 LSISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETLKEYGNVGIAVVR--IPSEFYYTE 361
L +SW +A + I +++ ++ L G+ + P TE
Sbjct: 18 LRLSWTA-----PDAAFDSFMIQYQESEKVG-EAINLTVPGSERSYDLTGLKP----GTE 67
Query: 362 YEVKVQAINDVGPGPESEVV 381
Y V + +
Sbjct: 68 YTVSIYGVKGGHRSNPLSAE 87
>3rbg_A Cytotoxic and regulatory T-cell molecule; IGV, crtam, structural
genomics, PSI-biology, NEW YORK struc genomics research
consortium, nysgrc; 2.30A {Homo sapiens}
Length = 124
Score = 48.8 bits (116), Expect = 3e-07
Identities = 15/91 (16%), Positives = 28/91 (30%), Gaps = 13/91 (14%)
Query: 4 EGGNVTIFCNPEAAPKPKFVW-KKDGNIIGSGGRRKI-----------FENGNLLISPVS 51
EG +T+ C W G I + ++ + V+
Sbjct: 15 EGQTLTLKCVTSLRKNSSLQWLTPSGFTIFLNEYPVLKNSKYQLLHHSANQLSITVPNVT 74
Query: 52 RDDSGIYSCTATNVHGMDESKGRLIVLHGPS 82
D G+Y C + + + ++IVL
Sbjct: 75 LQDEGVYKCLHYS-DSVSTKEVKVIVLATMK 104
Score = 46.9 bits (111), Expect = 1e-06
Identities = 20/133 (15%), Positives = 44/133 (33%), Gaps = 23/133 (17%)
Query: 86 QLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINI-----D 140
IT+ + L L+C + + ++ T +G I + L+ + +
Sbjct: 6 NHTETITVEEGQTLTLKCVTSLRKNSSLQWL-TPSGFTIFLNEYPVLKNSKYQLLHHSAN 64
Query: 141 GGLLEITNASFADAGEYECVVKSTVGKISTKTTVIVEGPPGLPGGVQVVEVHKTSATIQW 200
+ + N + D G Y+C+ + + + VIV
Sbjct: 65 QLSITVPNVTLQDEGVYKCLH-YSDSVSTKEVKVIVLATMKGEF---------------- 107
Query: 201 TDGATNGRPITHY 213
++ RP+ H+
Sbjct: 108 CRYPSHWRPLEHH 120
>1nkr_A P58-CL42 KIR; inhibitory receptor, natural killer cells,
immunological receptors, immunoglobulin fold; 1.70A
{Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1m4k_A 1efx_D
2dli_A 2dl2_A 3h8n_A
Length = 201
Score = 49.9 bits (119), Expect = 4e-07
Identities = 33/168 (19%), Positives = 55/168 (32%), Gaps = 22/168 (13%)
Query: 4 EGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENG----NLLISPVSRDDSGIYS 59
V + C + F+ ++G + +G N IS +++D +G Y
Sbjct: 21 SEETVILQCWSDV-MFEHFLLHREGMFNDTLRLIGEHHDGVSKANFSISRMTQDLAGTYR 79
Query: 60 CTATNVHGMDE----SKGRLIVLHGPSYYEQL--PPKITIAAHRNLQLRCSAHTEELLDV 113
C + H + S IV+ G L P T+ A N+ L CS+ +
Sbjct: 80 CYGSVTHSPYQVSAPSDPLDIVIIGLYEKPSLSAQPGPTVLAGENVTLSCSSRSS---YD 136
Query: 114 AYIWTHNGVRIGNMDLNELETPNINIDGGL--LEITNASFADAGEYEC 159
Y + G + +E P G + G Y C
Sbjct: 137 MYHLSREG------EAHERRLPAGPKVNGTFQADFPLGPATHGGTYRC 178
>2h41_A Fibronectin; beta sandwich, cell adhesion, structural protein; NMR
{Homo sapiens} PDB: 2h45_A
Length = 95
Score = 47.5 bits (113), Expect = 4e-07
Identities = 20/101 (19%), Positives = 32/101 (31%), Gaps = 9/101 (8%)
Query: 388 DMPQVAPQGVFSRGFNSTAINVTWNPIELIRENIRGRLIGHRIKYWKEDNPEETAVYYLS 447
VA + +++ V+W + G R++Y + +E L
Sbjct: 4 GSHLVATSESVT-EITASSFVVSWVSAS-------DTVSGFRVEYELSEEGDEPQYLDLP 55
Query: 448 RTTRNWALIVGLQPDTKYYVKVMAYNNAGEGPESERYLERT 488
T I L P KY V V + GE + T
Sbjct: 56 STA-TSVNIPDLLPGRKYIVNVYQISEDGEQSLILSTSQTT 95
Score = 47.1 bits (112), Expect = 6e-07
Identities = 18/93 (19%), Positives = 39/93 (41%), Gaps = 10/93 (10%)
Query: 496 PPSAVHIKGINPTTVHVTWRYVSPSFEEEPIIGYKVRVWEVDQDMSRANDTIIPVGNTLD 555
++ + I ++ V+W VS S + + G++V ++ + +
Sbjct: 8 VATSESVTEITASSFVVSW--VSAS---DTVSGFRVEYELSEEGDEPQYLDLPSTATS-- 60
Query: 556 ADIVDLSPGKRYHMRVLAFSNGGDGRMSSPAIT 588
+I DL PG++Y + V S G+ S ++
Sbjct: 61 VNIPDLLPGRKYIVNVYQISEDGE---QSLILS 90
Score = 46.0 bits (109), Expect = 1e-06
Identities = 13/103 (12%), Positives = 29/103 (28%), Gaps = 14/103 (13%)
Query: 178 GPPGLPGGVQVVEVHKTSATIQWTDGATNGRPITHYKI-IARTNWNSTWFNVSEHVIGKE 236
G + V E+ +S + W + ++ +++ + +
Sbjct: 4 GSHLVATSESVTEITASSFVVSWVSAS---DTVSGFRVEYELSEEGDEP---QYLDLPST 57
Query: 237 VDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPSPQ 279
I + L+P Y V +E G + Q
Sbjct: 58 ATSVN------IPD-LLPGRKYIVNVYQISEDGEQSLILSTSQ 93
>1z9m_A GAPA225; nectin-like, IG-like domain, V domain, cell adhesion;
2.40A {Homo sapiens}
Length = 145
Score = 48.6 bits (115), Expect = 5e-07
Identities = 19/100 (19%), Positives = 32/100 (32%), Gaps = 18/100 (18%)
Query: 4 EGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENG------------NLLISPVS 51
GG V + C + W G ++ + ++ IS V+
Sbjct: 52 AGGTVVLKCQVKDHEDSSLQWSNPAQQTLYFGEKRALRDNRIQLVTSTPHELSISISNVA 111
Query: 52 RDDSGIYSCTATNVHGMDESKGRLIVLHGPSYYEQLPPKI 91
D G Y+C+ + +K + VL P P I
Sbjct: 112 LADEGEYTCSI-FTMPVRTAKSLVTVLGIPQ-----KPII 145
Score = 45.2 bits (106), Expect = 8e-06
Identities = 25/130 (19%), Positives = 49/130 (37%), Gaps = 9/130 (6%)
Query: 60 CTATNVHGMDESKGRLIVLHGPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTH 119
+ ++ D+ K + + T+ A + L+C ++ D + W++
Sbjct: 17 MDSPDLGTDDDDKAMADINLSQDDSQPWTSDETVVAGGTVVLKC--QVKDHEDSSLQWSN 74
Query: 120 NGVRI-GNMDLNELETPNINIDGG-----LLEITNASFADAGEYECVVKSTVGKISTKTT 173
+ + L I + + I+N + AD GEY C + T+ + K+
Sbjct: 75 PAQQTLYFGEKRALRDNRIQLVTSTPHELSISISNVALADEGEYTCSI-FTMPVRTAKSL 133
Query: 174 VIVEGPPGLP 183
V V G P P
Sbjct: 134 VTVLGIPQKP 143
>1iar_B Protein (interleukin-4 receptor alpha chain); cytokine
receptor,interleukin-4, cytokine/receptor complex; 2.30A
{Homo sapiens} SCOP: b.1.2.1 b.1.2.1 PDB: 3bpl_B*
3bpn_B* 3bpo_B*
Length = 207
Score = 49.6 bits (118), Expect = 6e-07
Identities = 25/170 (14%), Positives = 48/170 (28%), Gaps = 12/170 (7%)
Query: 428 HRIKYWKEDNPEETAVYYLSRTTRN---WALIVG-LQPDTKYYVKVMAYNNAGEGPESER 483
R+ Y E L++ + Y + + A
Sbjct: 33 LRLLYQLVFLLSEAHTCIPENNGGAGCVCHLLMDDVVSADNYTLDLWAGQQLLW---KGS 89
Query: 484 YLERTYRKAPQKPPSAVHIKGINPTTVHVTWRY-VSPSFEEEPIIGYKVRVWEVDQDMSR 542
+ + K P + + T+ +TW P + Y V +W +
Sbjct: 90 FKPSEHVKPR--APGNLTVHTNVSDTLLLTWSNPYPPDNYLYNHLTYAVNIWSENDPADF 147
Query: 543 ANDTIIPVGNTLDADIVDLSPGKRYHMRVLAFSNGGDGRMS--SPAITFQ 590
+ + +L L G Y RV A++ + S SP+ +
Sbjct: 148 RIYNVTYLEPSLRIAASTLKSGISYRARVRAWAQAYNTTWSEWSPSTKWH 197
Score = 43.5 bits (102), Expect = 6e-05
Identities = 25/144 (17%), Positives = 46/144 (31%), Gaps = 13/144 (9%)
Query: 252 LVPWSTYEFKVIAGNELGYGEPSSPSPQYNTPADKPYQAPSRIGGGGGKIGDLSISWE-P 310
+V Y + AG +L + PS KP +AP + L ++W P
Sbjct: 68 VVSADNYTLDLWAGQQLLWKGSFKPSEHV-----KP-RAPGNLTVHTNVSDTLLLTWSNP 121
Query: 311 LPREKQNAPNIYYKIFWRKKNDTEFQSETLKEYGNVGIAVVRIPSEFY-YTEYEVKVQAI 369
P + ++ Y + +ND + + ++ S Y +V+A
Sbjct: 122 YPPDNYLYNHLTYAVNIWSENDPA--DFRIYNVTYLEPSLRIAASTLKSGISYRARVRAW 179
Query: 370 NDVGPGPESE---VVTIFSAEDMP 390
SE ++ P
Sbjct: 180 AQAYNTTWSEWSPSTKWHNSYREP 203
>2pet_A Lutheran blood group glycoprotein; immunoglobulin superfamily.,
cell adhesion; 1.70A {Homo sapiens} PDB: 2pf6_A
Length = 231
Score = 49.8 bits (118), Expect = 7e-07
Identities = 26/205 (12%), Positives = 47/205 (22%), Gaps = 49/205 (23%)
Query: 4 EGGNVTIFCNPEAAPKPKFV-WKKDG-----------------------NIIGSGGRRKI 39
G +V + C P + W + G ++
Sbjct: 14 RGKSVILDCTPTGTHDHYMLEWFLTDRSGARPRLASAEMQGSELQVTMHDTRGRSPPYQL 73
Query: 40 FENGNLLISPVSRDDSGIYSCTA-TNVHGMDESKGRLIVLHGPSY---YEQLPPKITIAA 95
G L+++ D Y C G E+ RL V P +
Sbjct: 74 DSQGRLVLAEAQVGDERDYVCVVRAGAAGTAEATARLNVFAKPEATEVSPNKGTLSVMED 133
Query: 96 HRNLQLRCSAHTEELLDVAY-----IWTHNGVRIGN----MDLNELETPNINIDGGL--- 143
C++ W NG R+ + + + GL
Sbjct: 134 SAQEIATCNSRN------GNPAPKITWYRNGQRLEVPVEMNPEGYMTSRTVREASGLLSL 187
Query: 144 ---LEITNASFADAGEYECVVKSTV 165
L + + C ++
Sbjct: 188 TSTLYLRLRKDDRDASFHCAAHYSL 212
Score = 39.4 bits (91), Expect = 0.002
Identities = 25/144 (17%), Positives = 48/144 (33%), Gaps = 20/144 (13%)
Query: 86 QLPPKITIAAHRNLQLRCSA-HTEELLDVAYIWTHNGVRIGNMDLNELETPNINI----- 139
+PP + + +++ L C+ T + + + T + E++ + +
Sbjct: 5 SVPPLVEVMRGKSVILDCTPTGTHDHYMLEWFLTDRSGARPRLASAEMQGSELQVTMHDT 64
Query: 140 ----------DGGLLEITNASFADAGEYECVVKST-VGKISTKTTVIVEGPPGLP---GG 185
G L + A D +Y CVV++ G + V P
Sbjct: 65 RGRSPPYQLDSQGRLVLAEAQVGDERDYVCVVRAGAAGTAEATARLNVFAKPEATEVSPN 124
Query: 186 VQVVEVHKTSATIQWTDGATNGRP 209
+ V + SA T + NG P
Sbjct: 125 KGTLSVMEDSAQEIATCNSRNGNP 148
>2b5i_B Interleukin-2 receptor beta chain; four-helix bundle, fibronectin
domain, cytokine-cytokine REC complex; HET: NAG; 2.30A
{Homo sapiens} SCOP: b.1.2.1 b.1.2.1 PDB: 3qaz_B*
2erj_B*
Length = 214
Score = 49.4 bits (117), Expect = 7e-07
Identities = 26/200 (13%), Positives = 62/200 (31%), Gaps = 19/200 (9%)
Query: 402 FNSTAINVTWNPIELIRENIRGRLIGHRIKYW--KEDNPEETAVYYLSRTTRNWALIVGL 459
+ I+ W+ + ++ W + + + +S+ + LI+G
Sbjct: 13 NSRAQISCVWSQDGA------LQDTSCQVHAWPDRRRWQQTCELLPVSQASWACNLILG- 65
Query: 460 QPDTKYYVKVMAYN---NAGEGPESERYLERTYRKAPQ---KPPSAVHIKGINPTTVHVT 513
PD++ V EG + ++ P ++ + + +++
Sbjct: 66 APDSQKLTTVDIVTLRVLCREGVRWRVMAIQDFKPFENLRLMAPISLQVVHVETHRCNIS 125
Query: 514 WRYVSPSFEEEPIIGYKVRVWEVDQDMSRANDTIIPVGNTLDADIVDLSPGKRYHMRVLA 573
W S E + ++ R A + + L+P +Y +V
Sbjct: 126 WEISQASHYFERHLEFEARTLSPGHTWEEAPLLTLKQKQE-WICLETLTPDTQYEFQVRV 184
Query: 574 FSNGGD-GRMS--SPAITFQ 590
G+ S S + F+
Sbjct: 185 KPLQGEFTTWSPWSQPLAFR 204
Score = 47.5 bits (112), Expect = 4e-06
Identities = 24/173 (13%), Positives = 54/173 (31%), Gaps = 3/173 (1%)
Query: 307 SWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETLKEYGNVGIAVVRIPSEFYYTEYEVKV 366
W + + ++ R+ T + + + S+ T V +
Sbjct: 21 VWSQDGALQDTSCQVHAWPDRRRWQQTCELLPVSQASWACNLILGAPDSQKLTTVDIVTL 80
Query: 367 QAINDVGPGPESEVVTIFSAEDMPQ-VAPQGVFSRGFNSTAINVTWNPIELIRENIRGRL 425
+ + G + F + + +AP + + N++W + + R
Sbjct: 81 RVLCREGVRWRVMAIQDFKPFENLRLMAPISLQVVHVETHRCNISWEISQAS--HYFERH 138
Query: 426 IGHRIKYWKEDNPEETAVYYLSRTTRNWALIVGLQPDTKYYVKVMAYNNAGEG 478
+ + + E A + + W + L PDT+Y +V GE
Sbjct: 139 LEFEARTLSPGHTWEEAPLLTLKQKQEWICLETLTPDTQYEFQVRVKPLQGEF 191
Score = 34.4 bits (78), Expect = 0.068
Identities = 23/95 (24%), Positives = 33/95 (34%), Gaps = 8/95 (8%)
Query: 183 PGGVQVVEVHKTSATIQWTDGATNGRPITHYKIIART-NWNSTWFNVSEHVIGKEVDRYT 241
P +QVV V I W + H + ART + TW +
Sbjct: 109 PISLQVVHVETHRCNISWEISQASHYFERHLEFEARTLSPGHTWEEA------PLLTLKQ 162
Query: 242 GRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSP 276
++ +E L P + YEF+V G SP
Sbjct: 163 KQEWICLET-LTPDTQYEFQVRVKPLQGEFTTWSP 196
>1jbj_A CD3 epsilon and gamma ectodomain fragment complex; beta-sheet,
C2-SET immunoglobulin superfamily, H-bonded G strand
PAIR, single-chain; NMR {Mus musculus} SCOP: b.1.1.4
b.1.1.4 PDB: 1xmw_A
Length = 186
Score = 48.3 bits (114), Expect = 1e-06
Identities = 26/189 (13%), Positives = 51/189 (26%), Gaps = 48/189 (25%)
Query: 5 GGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGNLLISPVSR-DDSGIYSCTAT 63
G +V + C + W+K+G + + +L++ S +DSG Y C
Sbjct: 14 GTSVELTCPLD--SDENLKWEKNGQELPQKHDK------HLVLQDFSEVEDSGYYVCYTP 65
Query: 64 N------------VHGMDESKGRLIVL-------HGPSYYEQLPPKITIAAHRN-----L 99
V D++K + K + + +
Sbjct: 66 ASNKNTYLYLKARVGSADDAKKDAAKKDDAKKDDAKKDGSQTNKAKNLVQVDGSRGDGSV 125
Query: 100 QLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEITNASFADAGEYEC 159
L C + W +G I ++ + + N + G Y+C
Sbjct: 126 LLTCGLTDKT-----IKWLKDGSIISPLNATKNT----------WNLGNNAKDPRGTYQC 170
Query: 160 VVKSTVGKI 168
Sbjct: 171 QGAKETSNP 179
Score = 44.1 bits (103), Expect = 3e-05
Identities = 14/61 (22%), Positives = 20/61 (32%), Gaps = 7/61 (11%)
Query: 4 EGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTAT 63
G+V + C W KDG+II K + ++D G Y C
Sbjct: 121 GDGSVLLTCG---LTDKTIKWLKDGSIISPLNATK----NTWNLGNNAKDPRGTYQCQGA 173
Query: 64 N 64
Sbjct: 174 K 174
>3d85_D IL-12B, interleukin-12 subunit P40, cytotoxic lymphocyte; FAB,
immune system/cytokine complex; 1.90A {Homo sapiens}
SCOP: b.1.1.4 b.1.2.1 b.1.2.1 PDB: 3d87_B* 3duh_A*
1f42_A* 1f45_A* 3hmx_A* 3qwr_A*
Length = 306
Score = 49.0 bits (115), Expect = 2e-06
Identities = 33/301 (10%), Positives = 72/301 (23%), Gaps = 52/301 (17%)
Query: 4 EGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGN-LLISPVSRDDSGIYSCTA 62
G V + C + + W D ++ +G L I D+G Y+C
Sbjct: 20 PGEMVVLTC--DTPEEDGITWTLDQ-------SSEVLGSGKTLTIQVKEFGDAGQYTCHK 70
Query: 63 TN-----VHGMDESKGRLIVLHGPSYYEQLPPKIT----IAAHRNLQLRCSAHTEELLDV 113
+ K I ++ P T A + + + C T D+
Sbjct: 71 GGEVLSHSLLLLHKKEDGIWSTDILKDQKEPKNKTFLRCEAKNYSGRFTCWWLTTISTDL 130
Query: 114 AYIWT----HNGVRIGNMDLNELETPNINIDGGLLEITNASFADAGE----------YEC 159
+ + + L + D E + D+
Sbjct: 131 TFSVKSSRGSSDPQGVTCGAATLSAERVRGDNKEYEYSVECQEDSACPAAEESLPIEVMV 190
Query: 160 VVKSTVGKISTKTTVIVE--GPPGLPGGVQVVEVHKTSA-TIQWTDGATNGRPITHYKI- 215
+ ++ + P P +Q+ + + + W T P +++ +
Sbjct: 191 DAVHKLKYEQYTSSFFIRDIIKPDPPKNLQLKPLKNSRQVEVSWEYPDTWSTPHSYFSLT 250
Query: 216 --IARTNWNSTWFNVSEHVIGKEVDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEP 273
+ + ++ V A +
Sbjct: 251 FCVQVQGKSKREKKDRVFTDKTSAT-------------VICRKNASISVRAQDRYYSSSW 297
Query: 274 S 274
S
Sbjct: 298 S 298
Score = 41.6 bits (96), Expect = 4e-04
Identities = 16/126 (12%), Positives = 34/126 (26%), Gaps = 7/126 (5%)
Query: 357 FYYTEYEVKVQAINDVGPGPESEVVTIFSAEDMPQVAPQGVFSRGFNSTAINVTWNPIEL 416
EV V A++ + + I P NS + V+W +
Sbjct: 181 EESLPIEVMVDAVHKLKYEQYTSSFFIRDI-IKPDPPKNLQLKPLKNSRQVEVSWEYPDT 239
Query: 417 IRENIRGRLIGHRIKYWKEDNPEETAVYYLSRTTRNWALIVGLQPDTKYYVKVMAYNNAG 476
+ ++ + E+ + +T+ + + V A +
Sbjct: 240 WSTPHSYFSLTFCVQVQGKSKREKKDRVFTDKTS------ATVICRKNASISVRAQDRYY 293
Query: 477 EGPESE 482
SE
Sbjct: 294 SSSWSE 299
Score = 29.3 bits (64), Expect = 4.3
Identities = 21/123 (17%), Positives = 32/123 (26%), Gaps = 16/123 (13%)
Query: 463 TKYYVKVMAYNNAGEGPESERYLERTYRKAPQKPPSAVHIKGI-NPTTVHVTWRYVSPSF 521
V V A + E PP + +K + N V V+W Y P
Sbjct: 184 LPIEVMVDAVHKLK--YEQYTSSFFIRDIIKPDPPKNLQLKPLKNSRQVEVSWEY--PDT 239
Query: 522 EEEP----IIGYKVRVWEVDQDMSRANDTIIPVGNTLDADIVDLSPGKRYHMRVLAFSNG 577
P + + V+V R + T + K + V A
Sbjct: 240 WSTPHSYFSLTFCVQVQGKS---KREKKDRVFTDKT----SATVICRKNASISVRAQDRY 292
Query: 578 GDG 580
Sbjct: 293 YSS 295
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 49.9 bits (118), Expect = 3e-06
Identities = 54/360 (15%), Positives = 102/360 (28%), Gaps = 123/360 (34%)
Query: 254 PWSTYEFKVIAGNELGYGEP-------SSPSPQYNTPADKPYQA---------PSRI--- 294
P T E + + Y E + +YN +PY P++
Sbjct: 97 PIKT-EQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLI 155
Query: 295 -GGGG-GKIGDLSISW---EPLPREKQNAPNIYYKIFW---RKKNDTEFQSETLKE-YGN 345
G G GK +W + + + +KIFW + N E E L++
Sbjct: 156 DGVLGSGK------TWVALDVC-LSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQ 208
Query: 346 VGIAVVRIPSEFYYTEYEVKVQAINDVGPGPESEVVTIFSAEDMPQVAPQGVFSRGFNST 405
+ + I+ + ++E+ + ++ N
Sbjct: 209 IDPNWTSRSDHSSNIKLR-----IHSI----QAELRRLLKSKPYE------------NCL 247
Query: 406 AI--NVTWNPIELIRE-NIRGR-LIGHRIKYWKEDNPEETAVYYLSRTTRNWALIVGLQP 461
+ NV N + N+ + L+ TTR + L
Sbjct: 248 LVLLNV-QNA-KAWNAFNLSCKILL----------------------TTRFKQVTDFLSA 283
Query: 462 DTKYYVKVMAYNNAGEGPESERYLERTYRKAPQK-PPSAVHIKGINPTTVHVTWRYVSPS 520
T ++ + ++ E + L + PQ P NP R +S
Sbjct: 284 ATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREV---LTTNP-------RRLS-- 331
Query: 521 FEEEPIIGYKVRV----WE----VDQDMSRANDTIIPVGNTLDADIVDLSPG---KRYHM 569
II +R W+ V+ D + +++ + L P K +
Sbjct: 332 -----IIAESIRDGLATWDNWKHVNCD---------KLTTIIESSLNVLEPAEYRKMFDR 377
Score = 32.1 bits (72), Expect = 0.61
Identities = 21/149 (14%), Positives = 44/149 (29%), Gaps = 28/149 (18%)
Query: 358 YYTEYEVKVQAI--NDVGPGPESEVVTIFSAEDMPQVAPQGVFSRGFNSTAINVTWNPIE 415
++ ++E D+ E V F +D+ P+ + S I+
Sbjct: 5 HHMDFETGEHQYQYKDILSVFEDAFVDNFDCKDVQD-MPKSILS----KEEID------H 53
Query: 416 LIRENIRGRLIGHRIKYWK-EDNPEETAVYYLSRTTRNWALIVGLQPDTKYYVKVMAYNN 474
+I + + G +W EE ++ L+ + K+ + +
Sbjct: 54 IIMS--KDAVSGTLRLFWTLLSKQEEMVQKFVEE---------VLRINYKFLMSPIKTEQ 102
Query: 475 AGEGPESERYLE---RTYRKAPQKPPSAV 500
+ Y+E R Y V
Sbjct: 103 RQPSMMTRMYIEQRDRLYNDNQVFAKYNV 131
Score = 30.2 bits (67), Expect = 2.4
Identities = 15/84 (17%), Positives = 34/84 (40%), Gaps = 9/84 (10%)
Query: 71 SKGRLIVLHGPSYYEQLPPKITIAAHRNL----QLRCSAHTEELLDVA---YIWTHNGVR 123
K I + ++ + A HR++ + + +++L+ Y ++H G
Sbjct: 421 PKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHH 480
Query: 124 IGNMDLNELET--PNINIDGGLLE 145
+ N++ E T + +D LE
Sbjct: 481 LKNIEHPERMTLFRMVFLDFRFLE 504
>3nvq_A Semaphorin-7A; beta-propeller, signaling, signaling protein-protein
binding; HET: NAG NDG; 2.40A {Homo sapiens}
Length = 590
Score = 49.2 bits (116), Expect = 3e-06
Identities = 12/58 (20%), Positives = 19/58 (32%), Gaps = 1/58 (1%)
Query: 6 GNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTAT 63
+ C E+ + W+ N+ S N L I ++ G Y C A
Sbjct: 516 SRYYLSCPMES-RHATYSWRHKENVEQSCEPGHQSPNCILFIENLTAQQYGHYFCEAQ 572
Score = 35.4 bits (80), Expect = 0.062
Identities = 16/101 (15%), Positives = 32/101 (31%), Gaps = 10/101 (9%)
Query: 79 HGPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNIN 138
P + K+++A + L C + Y W H + + P
Sbjct: 498 PNPKPDKAPLQKVSLAPNSRYYLSCPMES---RHATYSWRHKENVEQSCE------PGHQ 548
Query: 139 IDGGLLEITNASFADAGEYECV-VKSTVGKISTKTTVIVEG 178
+L I N + G Y C + + + + ++ E
Sbjct: 549 SPNCILFIENLTAQQYGHYFCEAQEGSYFREAQHWQLLPED 589
>1dr9_A B7-1 (CD80), T lymphocyte activation antigen; IG superfamily,
immune system; HET: NAG; 3.00A {Homo sapiens} SCOP:
b.1.1.1 b.1.1.3 PDB: 1i8l_A*
Length = 201
Score = 47.3 bits (112), Expect = 3e-06
Identities = 26/203 (12%), Positives = 57/203 (28%), Gaps = 41/203 (20%)
Query: 2 AGEGGNVTIFC----NPEAAPKPKFVWKKDGNII---GSG---------GRRKIFENGN- 44
T+ C + E + + W+K+ ++ SG R N
Sbjct: 6 KEVKEVATLSCGHNVSVEELAQTRIYWQKEKKMVLTMMSGDMNIWPEYKNRTIFDITNNL 65
Query: 45 -LLISPVSRDDSGIYSCTATNVHGMDESKGRLIVLHGPSYYEQLPPKITIAAHR---NLQ 100
++I + D G Y C + L + + P I+ +
Sbjct: 66 SIVILALRPSDEGTYECVVLKYEKDAFKREHLAEVTLSVKADFPTPSISDFEIPTSNIRR 125
Query: 101 LRCSAH------TEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEIT---NASF 151
+ CS W NG + T + + + L ++ + +
Sbjct: 126 IICSTSGGFPEPH-------LSWLENGEEL----NAINTTVSQDPETELYAVSSKLDFNM 174
Query: 152 ADAGEYECVVKSTVGKISTKTTV 174
+ C++K +++
Sbjct: 175 TTNHSFMCLIKYGHLRVNQTFNW 197
Score = 36.9 bits (85), Expect = 0.011
Identities = 17/105 (16%), Positives = 34/105 (32%), Gaps = 23/105 (21%)
Query: 144 LEITNASFADAGEYECVV-----KSTVGKISTKTTVIVEGPPGLPGGVQVVEVHKTS--- 195
+ I +D G YECVV + + + T+ V+ P + E+ ++
Sbjct: 67 IVILALRPSDEGTYECVVLKYEKDAFKREHLAEVTLSVKADFPTP-SISDFEIPTSNIRR 125
Query: 196 -----------ATIQWTDGATNGRPITHYKIIARTNWNSTWFNVS 229
+ W + NG + + + + VS
Sbjct: 126 IICSTSGGFPEPHLSWLE---NGEELNAINTTVSQDPETELYAVS 167
>2zg1_A Sialic acid-binding IG-like lectin 5; siglec-5 inhibitory receptor,
two-domain structure, V-SET, C2-SET, IG-like domain,
6'-sialyllactose complex; HET: SIA; 2.70A {Homo sapiens}
PDB: 2zg3_A* 2zg2_A
Length = 214
Score = 47.1 bits (111), Expect = 4e-06
Identities = 33/207 (15%), Positives = 62/207 (29%), Gaps = 43/207 (20%)
Query: 4 EGGNVTIFC-------NPEAAPKPKFVWKKDGNIIGSG-----------------GRRKI 39
EG V + C + ++P W +DG I GR ++
Sbjct: 14 EGLCVLVPCSFSYPWRSWYSSPPLYVYWFRDGEIPYYAEVVATNNPDRRVKPETQGRFRL 73
Query: 40 F-----ENGNLLISPVSRDDSGIYSC---TATNVHGMDESKGRLIVLHGPSYYEQLPPKI 91
+N +L I +D+G Y +V + + + +
Sbjct: 74 LGDVQKKNCSLSIGDARMEDTGSYFFRVERGRDVKYSYQQNKLNLEVTALIEKPDIHFLE 133
Query: 92 TIAAHRNLQLRCSAHT--EELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEITNA 149
+ + R +L CS E + + WT N + L +T
Sbjct: 134 PLESGRPTRLSCSLPGSCEAGPPLTFSWTGNALS---------PLDPETTRSSELTLTPR 184
Query: 150 SFADAGEYECVVKSTVGKISTKTTVIV 176
C +K +++T+ TV +
Sbjct: 185 PEDHGTNLTCQMKRQGAQVTTERTVQL 211
>2edo_A CD48 antigen; beta-sandwich, IG-fold, B-lymphocyte activation
marker blast-1, BCM1 surface antigen, leukocyte antigen
MEM-102, TCT.1; NMR {Homo sapiens}
Length = 121
Score = 44.9 bits (106), Expect = 6e-06
Identities = 24/111 (21%), Positives = 37/111 (33%), Gaps = 24/111 (21%)
Query: 1 YAGEGGNVTIFCN-PEAAPKPKFVWKKDGN---IIGSGGRRKIFE------------NGN 44
G NVT+ + + W + + + K FE +G
Sbjct: 15 TVVSGSNVTLNISESLPENYKQLTWFYTFDQKIVEWDSRKSKYFESKFKGRVRLDPQSGA 74
Query: 45 LLISPVSRDDSGIYSCTATNVHG-MDESKGRLIVLHGPSYYEQLP-PKITI 93
L IS V ++D+ Y G E K +L V + +P P I I
Sbjct: 75 LYISKVQKEDNSTYIMRVLKKTGNEQEWKIKLQV------LDPVPKPVIKI 119
Score = 36.4 bits (84), Expect = 0.006
Identities = 21/115 (18%), Positives = 33/115 (28%), Gaps = 12/115 (10%)
Query: 79 HGPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNG-VRIGNMDLNELETPN- 136
G S L +T+ + N+ L S E W + +I D + +
Sbjct: 3 SGSSGQGHLVH-MTVVSGSNVTLNISESLPENYK-QLTWFYTFDQKIVEWDSRKSKYFES 60
Query: 137 -------INIDGGLLEITNASFADAGEYECVVKSTVGKISTKT-TVIVEGPPGLP 183
++ G L I+ D Y V G + V P P
Sbjct: 61 KFKGRVRLDPQSGALYISKVQKEDNSTYIMRVLKKTGNEQEWKIKLQVLDPVPKP 115
>1xiw_A T-cell surface glycoprotein CD3 epsilon chain; CD3-epsilon,
CD3-delta, UCHT1-SCFV, immunoglobulin fold,
antibody-antigen complex; 1.90A {Homo sapiens} SCOP:
b.1.1.4
Length = 105
Score = 44.0 bits (103), Expect = 9e-06
Identities = 14/70 (20%), Positives = 25/70 (35%), Gaps = 5/70 (7%)
Query: 5 GGNVTIFCNPEAAPKPKFVWKKDGNIIGS--GGRRKIFENGNLLISPVSR-DDSGIYSCT 61
G V + C P + +W+ + IG + + +L + S + SG Y C
Sbjct: 21 GTTVILTCPQY--PGSEILWQHNDKNIGGDEDDKNIGSDEDHLSLKEFSELEQSGYYVCY 78
Query: 62 ATNVHGMDES 71
D +
Sbjct: 79 PRGSKPEDAN 88
Score = 30.5 bits (68), Expect = 0.52
Identities = 19/87 (21%), Positives = 34/87 (39%), Gaps = 10/87 (11%)
Query: 85 EQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLL 144
Q P K++I+ + L C + + +W HN IG + + NI D L
Sbjct: 11 TQTPYKVSISG-TTVILTCPQYPGSEI----LWQHNDKNIGGDE----DDKNIGSDEDHL 61
Query: 145 EITNAS-FADAGEYECVVKSTVGKIST 170
+ S +G Y C + + + +
Sbjct: 62 SLKEFSELEQSGYYVCYPRGSKPEDAN 88
>1olz_A Semaphorin 4D; developmental protein, CD100, beta-propeller, PSI
domain, IG-like domain, extracellular receptor,
neurogenesis; 2.0A {Homo sapiens} SCOP: b.1.1.4
b.69.12.1 g.16.2.1 PDB: 3ol2_A*
Length = 663
Score = 47.5 bits (111), Expect = 1e-05
Identities = 16/78 (20%), Positives = 32/78 (41%), Gaps = 4/78 (5%)
Query: 18 PKPKFVWKKDGN-IIGSGGRRKIFENGNLLISPVSRDDSGIYSCTATNVHGMDESKGRLI 76
+ WK + + + NLLI +S DSG+Y C + +++ +++
Sbjct: 560 NLARVFWKFQNGVLKAESPKYGLMGRKNLLIFNLSEGDSGVYQCLSEE-RVKNKTVFQVV 618
Query: 77 VLHGPSYYEQLPPKITIA 94
H ++ PK +A
Sbjct: 619 AKHVLE--VKVVPKPVVA 634
Score = 38.6 bits (88), Expect = 0.006
Identities = 20/108 (18%), Positives = 33/108 (30%), Gaps = 13/108 (12%)
Query: 96 HRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEITNASFADAG 155
+L+CS + W + LL I N S D+G
Sbjct: 548 GGTAELKCSQKSNL---ARVFWKFQNGVLKAESPKYGLMG----RKNLL-IFNLSEGDSG 599
Query: 156 EYECV-----VKSTVGKISTKTTVIVEGPPGLPGGVQVVEVHKTSATI 198
Y+C+ TV ++ K + V+ P + V + I
Sbjct: 600 VYQCLSEERVKNKTVFQVVAKHVLEVKVVPKPVVAPTLSVVQTEGSRI 647
>2edn_A Myosin-binding protein C, fast-type; beta-sandwich, IG-fold, fast
MYBP-C, C-protein, skeletal muscle fast isoform,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 118
Score = 43.6 bits (102), Expect = 1e-05
Identities = 18/89 (20%), Positives = 23/89 (25%), Gaps = 15/89 (16%)
Query: 4 EGGNVTIFCNPEAAP---KPKFVWKKDGNI---IGSGGRRKIFENGN---------LLIS 48
G + + KP W K + SG R E+ N L I
Sbjct: 26 TGKDAVVVAKVNGKELPDKPTIKWFKGKWLELGSKSGARFSFKESHNSASNVYTVELHIG 85
Query: 49 PVSRDDSGIYSCTATNVHGMDESKGRLIV 77
V D G Y D + V
Sbjct: 86 KVVLGDRGYYRLEVKAKDTCDSCGFNIDV 114
Score = 42.1 bits (98), Expect = 6e-05
Identities = 21/99 (21%), Positives = 33/99 (33%), Gaps = 7/99 (7%)
Query: 88 PPKITIAAHRNLQLRCSAHTEELLDVAYI------WTHNGVRIG-NMDLNELETPNINID 140
P +++ ++ + + +EL D I W G + G E N+
Sbjct: 19 PDSVSVETGKDAVVVAKVNGKELPDKPTIKWFKGKWLELGSKSGARFSFKESHNSASNVY 78
Query: 141 GGLLEITNASFADAGEYECVVKSTVGKISTKTTVIVEGP 179
L I D G Y VK+ S + VE P
Sbjct: 79 TVELHIGKVVLGDRGYYRLEVKAKDTCDSCGFNIDVEAP 117
>3q0h_A T cell immunoreceptor with IG and ITIM domains; immune receptor,
adhesion, structural genomics, NEW YORK STR genomics
research consortium, nysgrc; 1.70A {Homo sapiens} PDB:
3rq3_A 3udw_A* 3ucr_A
Length = 117
Score = 43.8 bits (103), Expect = 2e-05
Identities = 16/98 (16%), Positives = 32/98 (32%), Gaps = 16/98 (16%)
Query: 1 YAGEGGNVTIFCNPEAAPKPKFV--WKKDGNIIGS-------------GGRRKIFENGNL 45
A +GG++ + C+ + W++ ++ R L
Sbjct: 14 SAEKGGSIILQCHLSSTTAQVTQVNWEQQDQLLAICNADLGWHISPSFKDRVAPGPGLGL 73
Query: 46 LISPVSRDDSGIYSCT-ATNVHGMDESKGRLIVLHGPS 82
+ ++ +D+G Y C T G + L VL
Sbjct: 74 TLQSLTVNDTGEYFCIYHTYPDGTYTGRIFLEVLESSV 111
Score = 37.2 bits (86), Expect = 0.002
Identities = 14/103 (13%), Positives = 32/103 (31%), Gaps = 8/103 (7%)
Query: 86 QLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIG------NMDLNELETPNINI 139
+ I+ ++ L+C + W + ++ +
Sbjct: 8 ETTGNISAEKGGSIILQCHLSSTTAQVTQVNWEQQDQLLAICNADLGWHISPSFKDRVAP 67
Query: 140 DGGL-LEITNASFADAGEYECVVKS-TVGKISTKTTVIVEGPP 180
GL L + + + D GEY C+ + G + + + V
Sbjct: 68 GPGLGLTLQSLTVNDTGEYFCIYHTYPDGTYTGRIFLEVLESS 110
>2cui_A Tenascin-X; fibronectin type III domain, extracellular matirx,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
b.1.2.1
Length = 112
Score = 43.0 bits (101), Expect = 2e-05
Identities = 12/99 (12%), Positives = 27/99 (27%), Gaps = 4/99 (4%)
Query: 177 EGPPGLPGGVQVVEVHKTSATIQWTDGATNGRPITHYKIIARTNWNSTWFNVSEHVIGKE 236
G + V +V +S + W + + ST ++ +E
Sbjct: 6 SGSRPRLSQLSVTDVTTSSLRLNWEAPPG---AFDSFLLRFGVPSPSTLEPHPRPLLQRE 62
Query: 237 VDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSS 275
+ R A + + L + Y + +
Sbjct: 63 LMVPGTRHSAVLRD-LRSGTLYSLTLYGLRGPHKADSIQ 100
Score = 36.5 bits (84), Expect = 0.004
Identities = 10/91 (10%), Positives = 26/91 (28%), Gaps = 11/91 (12%)
Query: 496 PPSAVHIKGINPTTVHVTWRYVSPSFEEEPIIGYKVRVWEVDQDMSRANDTIIPV----- 550
S + + + +++ + W +F+ + +R + +
Sbjct: 11 RLSQLSVTDVTTSSLRLNWEAPPGAFD-----SFLLRFGVPSPSTLEPHPRPLLQRELMV 65
Query: 551 -GNTLDADIVDLSPGKRYHMRVLAFSNGGDG 580
G A + DL G Y + +
Sbjct: 66 PGTRHSAVLRDLRSGTLYSLTLYGLRGPHKA 96
Score = 36.1 bits (83), Expect = 0.006
Identities = 8/76 (10%), Positives = 24/76 (31%)
Query: 404 STAINVTWNPIELIRENIRGRLIGHRIKYWKEDNPEETAVYYLSRTTRNWALIVGLQPDT 463
++++ + W ++ R + + TR+ A++ L+ T
Sbjct: 22 TSSLRLNWEAPPGAFDSFLLRFGVPSPSTLEPHPRPLLQRELMVPGTRHSAVLRDLRSGT 81
Query: 464 KYYVKVMAYNNAGEGP 479
Y + + +
Sbjct: 82 LYSLTLYGLRGPHKAD 97
>4f80_A Butyrophilin subfamily 3 member A1; B7 superfamily, CD277, immune
system; 1.94A {Homo sapiens} PDB: 4f9l_A* 4f9p_A 4f8t_A
4f8q_A
Length = 226
Score = 44.7 bits (105), Expect = 3e-05
Identities = 22/143 (15%), Positives = 48/143 (33%), Gaps = 15/143 (10%)
Query: 42 NGNLLISPVSRDDSGIYSCTATNVHGMDESKGRLIVLHGPSYYEQLPPKITIAAHR--NL 99
L I V+ DSG Y C + +++ L V S + + ++ +
Sbjct: 82 KAALRIHNVTASDSGKYLCYFQDGDFYEKALVELKVAALGS-----DLHVDVKGYKDGGI 136
Query: 100 QLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEIT---NASFADAGE 156
L C + W++N + +E P + GL + +
Sbjct: 137 HLECRST-GWYPQPQIQWSNNKGEN----IPTVEAPVVADGVGLYAVAASVIMRGSSGEG 191
Query: 157 YECVVKSTVGKISTKTTVIVEGP 179
C ++S++ + ++ + P
Sbjct: 192 VSCTIRSSLLGLEKTASISIADP 214
Score = 35.8 bits (82), Expect = 0.022
Identities = 16/102 (15%), Positives = 28/102 (27%), Gaps = 15/102 (14%)
Query: 144 LEITNASFADAGEYECVVKSTVGKISTKTTVIVEGPPGLPGGVQVVEVHKT--------- 194
L I N + +D+G+Y C + + V
Sbjct: 85 LRIHNVTASDSGKYLCYFQDGDFYEKALVELKVAALGSDLHVDVKGYKDGGIHLECRSTG 144
Query: 195 ---SATIQWTDGATNGRPITHYKIIARTNWNSTWFNVSEHVI 233
IQW++ G I + + + V+ VI
Sbjct: 145 WYPQPQIQWSNN--KGENIPTVEAPVVADGVGL-YAVAASVI 183
>3eow_R Poliovirus receptor; immunoglobulin super family, alternative
splicing, cell adhesion, cell membrane, glycoprotein,
HOST-virus interaction; 3.50A {Homo sapiens} PDB: 3uro_R
3epc_R* 3epd_R* 3epf_R*
Length = 221
Score = 43.9 bits (103), Expect = 6e-05
Identities = 31/218 (14%), Positives = 57/218 (26%), Gaps = 51/218 (23%)
Query: 2 AGEGGNVTIFCNPEAAPKP-----KFVWKKDGN-----IIGSGGRRKIFE---------- 41
G +VT+ C + + W + G + E
Sbjct: 11 GFLGDSVTLPCYLQVPNMEVTHVSQLTWARHGESGSMAVFHQTQGPSYSESKRLEFVAAR 70
Query: 42 ------NGNLLISPVSRDDSGIYSCT-ATNVHGMDESKGRLIVLHGPSYYEQLPPKITIA 94
+ +L + + +D G Y+C T G L VL P + K+ +
Sbjct: 71 LGAELRDASLRMFGLRVEDEGSYTCLFVTFPQGSRSVDIWLRVLAKPQNTAE-VQKVQLT 129
Query: 95 AHRNLQLRCSAHTEELLDVAY-----IWTHNGVRIGNMDLNELETPNINIDG-----GLL 144
RC + W + + + + G L
Sbjct: 130 GEPVPMARCVSTG------GRPPAQITWHSDLGGM-----PQTSQVPGFLSGTVTVTSLW 178
Query: 145 EITNASFADAGEYECVVK--STVGKISTKTTVIVEGPP 180
+ +S D + C V+ S ++ V P
Sbjct: 179 ILVPSSQVDGKQVTCKVEHESFEKPQLLTVSLTVYYPH 216
>3tgx_A Interleukin-21 receptor; class I cytokine, class I cytokine
receptor, sugarbridge, fibronectine domain, signaling,
cytokine-cytokine receptor; HET: MAN FUL NAG BMA FUC;
2.80A {Homo sapiens}
Length = 219
Score = 43.6 bits (102), Expect = 7e-05
Identities = 26/207 (12%), Positives = 61/207 (29%), Gaps = 16/207 (7%)
Query: 307 SWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETLKEYGNVGIAVVR--IPSEFYYTEYEV 364
E + + ++ + + D + N A + + +
Sbjct: 17 ILEM-WNLHPSTLTLTWQDQYEELKDEATSCSLHRSAHNATHATYTCHMDVFHFMADDIF 75
Query: 365 KVQAINDVGPGPESEVVTIFSAEDMPQVAPQGVFSRGFNSTAINVTWN-PIELIRENIRG 423
VQ + G E + AE + P V S ++W E +
Sbjct: 76 SVQITDQSG-QYSQECGSFLLAESIKPAPPFDV--TVTFSGQYQISWRSDYEDPAFYMLK 132
Query: 424 RLIGHRIKYWKEDNPEETAVYYL---SRTTRNWALIVGLQPDTKYYVKVMAYNNAGEGPE 480
+ + ++Y +P + + L + + D+ Y ++V A G +
Sbjct: 133 GKLQYELQYRNRGDPWAVSPRRKLISVDSRSVSLLPLEFRKDSSYELQVRAGPMPGSSYQ 192
Query: 481 ------SERYLERTYRKAPQKPPSAVH 501
S+ + +T + ++ H
Sbjct: 193 GTWSEWSDPVIFQTQSEELKEHHHHHH 219
Score = 38.6 bits (89), Expect = 0.003
Identities = 23/206 (11%), Positives = 52/206 (25%), Gaps = 18/206 (8%)
Query: 403 NSTAINVTWNPIELIRENIRGRLIGHRIKYWKEDNPEETAVYYLSRTTRNWALIVGLQPD 462
+ L + +D +++ + + +
Sbjct: 10 YLQTVICILEMWNLHPSTLTLTW--QDQYEELKDEATSCSLHRSAHNATHATYTCHMDVF 67
Query: 463 ---TKYYVKVMAYNNAGEGPESERYLERTYRKAPQKPPSAVHIKGINPTTVHVTWRYVSP 519
V + +G+ + P PP V + ++WR
Sbjct: 68 HFMADDIFSVQITDQSGQYSQECGSFLLAESIKP-APPFDVTVT--FSGQYQISWRSDYE 124
Query: 520 SFEEEPIIG---YKVRVWEV-DQDMSRANDTIIPV-GNTLDADIVDLSPGKRYHMRVLAF 574
+ G Y+++ D +I V ++ ++ Y ++V A
Sbjct: 125 DPAFYMLKGKLQYELQYRNRGDPWAVSPRRKLISVDSRSVSLLPLEFRKDSSYELQVRAG 184
Query: 575 SNGGDGRMS-----SPAITFQMGEEK 595
G S + FQ E+
Sbjct: 185 PMPGSSYQGTWSEWSDPVIFQTQSEE 210
>2vsd_A CHIR AB1; immune system receptor, FC receptor; HET: NAG NDG MAN;
1.82A {Gallus gallus}
Length = 105
Score = 39.3 bits (92), Expect = 4e-04
Identities = 11/59 (18%), Positives = 22/59 (37%), Gaps = 5/59 (8%)
Query: 4 EGGNVTIFCNPEAAPKP--KFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSC 60
G VT+ C+ P+ +G + + K + + + +D+G Y C
Sbjct: 18 LGDTVTLRCH---LPRMAAWVQLWLNGTLRFDKEKDKEQDAAEFSFAVTNLEDAGTYQC 73
Score = 28.1 bits (63), Expect = 3.4
Identities = 16/82 (19%), Positives = 24/82 (29%), Gaps = 16/82 (19%)
Query: 85 EQLP-------PKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNI 137
+QLP P ++ + LRC NG L + +
Sbjct: 1 QQLPQPSLSLHPSQGVSLGDTVTLRCHLPRM---AAWVQLWLNG------TLRFDKEKDK 51
Query: 138 NIDGGLLEITNASFADAGEYEC 159
D + DAG Y+C
Sbjct: 52 EQDAAEFSFAVTNLEDAGTYQC 73
>1y6k_R Interleukin-10 receptor alpha chain; helix bundle, receptor
complex, immune system; 2.52A {Homo sapiens} SCOP:
b.1.2.1 b.1.2.1 PDB: 1j7v_R* 1lqs_R 1y6m_R 1y6n_R
Length = 214
Score = 41.3 bits (96), Expect = 4e-04
Identities = 18/171 (10%), Positives = 47/171 (27%), Gaps = 11/171 (6%)
Query: 307 SWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETLKEYGNVGIAVVRIPSEFYYTEYEVKV 366
W P+P+ + + Y++ + + S + ++ Y +V
Sbjct: 23 HWTPIPQ---QSESTCYEVALLRYGIESWNSISQCSQTLSYDLTAVTLDLYHSNGYRARV 79
Query: 367 QAINDVGPGPESEVVTIFSAEDMPQVAPQGVFSRGFNSTAINVTW-----NPIELIRENI 421
+A++ + T FS +++ + P + E+I
Sbjct: 80 RAVDGSRHSQWTVTNTRFSVDEVTLTVGSVNLEIHNGFILGKIQLPRPKMAPAQDTYESI 139
Query: 422 RGRLIGHRIKYWKEDNPEETAVYYLSRTTRNWALIVGLQPDTKYYVKVMAY 472
+ I K + ++ ++ V+V
Sbjct: 140 FSHFREYEIAIRKVPGQFTFTH---KKVKHEQFSLLTSGEVGEFCVQVKPS 187
Score = 35.1 bits (80), Expect = 0.044
Identities = 23/195 (11%), Positives = 56/195 (28%), Gaps = 24/195 (12%)
Query: 197 TIQWTDGATNGRPITHYKIIARTNWNSTWFNVSEHVIGKEVDRYTGRKEASIENVLVPWS 256
+ WT T Y++ +W ++S+ D ++ L +
Sbjct: 21 ILHWTPIPQQSES-TCYEVALLRYGIESWNSISQCSQTLSYDL------TAVTLDLYHSN 73
Query: 257 TYEFKVIA---GNELGYGEPSSPSPQYNTPADKPYQAPSRIGGGGGKIGDLSISWEPLPR 313
Y +V A + ++ + + G +G + + +
Sbjct: 74 GYRARVRAVDGSRHSQWTVTNTRFSVDEVTLTVG--SVNLEIHNGFILGKIQLPRPKMAP 131
Query: 314 EKQNAPNIY-----YKIFWRKKNDTEFQSETLKEYGNVGIAVVRIPSEFYYTEYEVKVQA 368
+ +I+ Y+I RK + ++ + E+ V+V+
Sbjct: 132 AQDTYESIFSHFREYEIAIRKVPGQFTFTHKKVKHEQFSLLTSG-----EVGEFCVQVKP 186
Query: 369 I--NDVGPGPESEVV 381
+ G S+
Sbjct: 187 SVASRSNKGMWSKEE 201
Score = 30.5 bits (68), Expect = 1.3
Identities = 11/119 (9%), Positives = 29/119 (24%), Gaps = 3/119 (2%)
Query: 459 LQPDTKYYVKVMAYNNAGEGPESERYLERTYRKAPQKPPSAVHIKGINPTTVHVTW--RY 516
L Y +V A + + + + + S +
Sbjct: 69 LYHSNGYRARVRAVDGSRHSQWTVTNTRFSVDEVTLTVGSVNLEIHNGFILGKIQLPRPK 128
Query: 517 VSPSFEEEPIIGYKVRVWEVDQDMSRANDTIIP-VGNTLDADIVDLSPGKRYHMRVLAF 574
++P+ + I R +E+ T ++ + ++V
Sbjct: 129 MAPAQDTYESIFSHFREYEIAIRKVPGQFTFTHKKVKHEQFSLLTSGEVGEFCVQVKPS 187
>3up1_A Interleukin-7 receptor subunit alpha; cytokine receptor,
fibronectin type 3 fold, membrane and SOL glycosylation,
immune system; HET: NAG FUC NGA; 2.15A {Homo sapiens}
PDB: 3di3_B* 3di2_B*
Length = 223
Score = 41.3 bits (96), Expect = 5e-04
Identities = 20/139 (14%), Positives = 41/139 (29%), Gaps = 7/139 (5%)
Query: 462 DTKYYVKVMAYNNAGEGPESERYLERTYRKAPQKPPSAVHIKGINPT-TVHVTWRYVSPS 520
K GE + + ++ T P + P + + VT+
Sbjct: 82 KFLLIGKSNICVKVGEKSLTCKKIDLTTIVKP-EAPFDLSVVYREGANDFVVTFNTSHLQ 140
Query: 521 FEEEPIIGYKVRVWEVDQDMSRANDTIIPVGNTLDADIVDLSPGKRYHMRVLAFSN-GGD 579
+ ++ + V + + + L L P Y ++V + +
Sbjct: 141 KKYVKVLMHDVAYRQEKDENKWT--HVNLSSTKLTLLQRKLQPAAMYEIKVRSIPDHYFK 198
Query: 580 GRMS--SPAITFQMGEEKE 596
G S SP+ F+ E
Sbjct: 199 GFWSEWSPSYYFRTPEINN 217
Score = 38.6 bits (89), Expect = 0.003
Identities = 30/186 (16%), Positives = 61/186 (32%), Gaps = 18/186 (9%)
Query: 299 GKIGDLSISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETLKEYGNVGIAVVRIPSEFY 358
G L+ ++E N + + + + + I ++ +
Sbjct: 34 GSQHSLTCAFEDPDVNTTN----LEFEICGALVEVKCLNFRKLQE------IYFIETKKF 83
Query: 359 YTEYEVKVQAINDVGPGPESEVVTIFSAEDMPQVAPQGV-FSRGFNSTAINVTWNPIELI 417
+ + VG I + AP + + VT+N L
Sbjct: 84 LLIGKSNIC--VKVG-EKSLTCKKIDLTTIVKPEAPFDLSVVYREGANDFVVTFNTSHL- 139
Query: 418 RENIRGRLIGHRIKYWKEDNPEETAVYYLSRTTRNWALIVGLQPDTKYYVKV-MAYNNAG 476
+ +++ H + Y +E + + LS +T+ L LQP Y +KV ++
Sbjct: 140 -QKKYVKVLMHDVAYRQEKDENKWTHVNLS-STKLTLLQRKLQPAAMYEIKVRSIPDHYF 197
Query: 477 EGPESE 482
+G SE
Sbjct: 198 KGFWSE 203
>4esk_A LAIR-1, mlair1, leukocyte-associated immunoglobulin-like
receptor; IG-like domain, domain swapping, collagen
receptor, structural genomics; 1.76A {Mus musculus}
Length = 102
Score = 38.9 bits (91), Expect = 5e-04
Identities = 14/58 (24%), Positives = 21/58 (36%), Gaps = 2/58 (3%)
Query: 5 GGNVTIFC--NPEAAPKPKFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSC 60
G VT+ C + + +KDG+ I PV+ +G YSC
Sbjct: 23 GTFVTVVCSYSDKHDLYNMVRLEKDGSTFMEKSTEPYKTEDEFEIGPVNETITGHYSC 80
>3dlq_R Interleukin-22 receptor subunit alpha-1; cytokine-receptor complex,
fibronectin-III, cytokine, glycoprotein, polymorphism,
secreted, membrane; 1.90A {Homo sapiens} PDB: 3dgc_R*
Length = 211
Score = 40.8 bits (95), Expect = 5e-04
Identities = 16/124 (12%), Positives = 32/124 (25%), Gaps = 16/124 (12%)
Query: 358 YYTEYEVKVQAINDVGPGPESEVVTIFSAEDMPQVAPQGVFSRGFNSTAINVTWNPIELI 417
Y +V A++ G S + + P V + I + +P
Sbjct: 71 LTELYYARVTAVSAGGRSATKMTDRFSSLQHT-TLKPPDVTCISKVRS-IQMIVHPTPTP 128
Query: 418 RENIRGRLIGHR---------IKYWKEDNPEETAVYYLSRTTRNWALIVGLQPDTKYYVK 468
G + ++ + + GL PDT++
Sbjct: 129 IRAGDGHRLTLEDIFHDLFYHLELQVNRTYQMH-----LGGKQREYEFFGLTPDTEFLGT 183
Query: 469 VMAY 472
+M
Sbjct: 184 IMIL 187
Score = 38.5 bits (89), Expect = 0.003
Identities = 26/193 (13%), Positives = 53/193 (27%), Gaps = 15/193 (7%)
Query: 390 PQVAPQGV--FSRGFNSTAINVTWNPIELIRENIRGRLIGHRIKYWKEDNPEETAVYYLS 447
P Q V S F + +TW+ + + I+Y + A
Sbjct: 4 PSDLLQHVKFQSSNFENI---LTWDSGPEGTPDTV-----YSIEYKTYGERDWVAKKGCQ 55
Query: 448 RTTRNWA--LIVGLQPDTKYYVKVMAYNNAGEGPESERYLERTYRKAPQKPPSAVHIKGI 505
R TR + YY +V A + G + + KPP I +
Sbjct: 56 RITRKSCNLTVETGNLTELYYARVTAVSAGGRSATKMTDRFSSLQHTTLKPPDVTCISKV 115
Query: 506 NPTTVHVTWRYVSPSFEEEPIIGYKVRVWEVD---QDMSRANDTIIPVGNTLDADIVDLS 562
+ V + + + ++ + + G + + L+
Sbjct: 116 RSIQMIVHPTPTPIRAGDGHRLTLEDIFHDLFYHLELQVNRTYQMHLGGKQREYEFFGLT 175
Query: 563 PGKRYHMRVLAFS 575
P + ++
Sbjct: 176 PDTEFLGTIMILV 188
>4ety_A LAIR-1, mlair1, leukocyte-associated immunoglobulin-like receptor;
IG-like domain, extra celluar domain, domain swappin
nysgrc, structural genomics; 1.90A {Mus musculus}
Length = 118
Score = 38.6 bits (90), Expect = 8e-04
Identities = 18/91 (19%), Positives = 30/91 (32%), Gaps = 3/91 (3%)
Query: 5 GGNVTIFC--NPEAAPKPKFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTA 62
G VT+ C + + +KDG+ I PV+ +G YSC
Sbjct: 23 GTFVTVVCSYSDKHDLYNMVRLEKDGSTFMEKSTEPYKTEDEFEIGPVNETITGHYSCIY 82
Query: 63 TNVHGMDESKGRL-IVLHGPSYYEQLPPKIT 92
+ E L + + + + P T
Sbjct: 83 SKGITWSERSKTLELKVIKENVIQTPAPGPT 113
>3mpc_A FN3-like protein; fibronectin, FN(III), unknown function; 1.60A
{Clostridium thermocellum}
Length = 103
Score = 38.2 bits (89), Expect = 0.001
Identities = 19/90 (21%), Positives = 29/90 (32%), Gaps = 11/90 (12%)
Query: 393 APQGV-FSRGFNSTAINVTWNPIELIRENIRGRLIGHRIKYWKEDNPEETAVYYLSRTTR 451
P G+ + N+TWN + +K + T + + T
Sbjct: 7 FPTGLSAVLDSSGNTANLTWNAAP--------GANSYNVKRSTKSGGPYTTIA--TNITS 56
Query: 452 NWALIVGLQPDTKYYVKVMAYNNAGEGPES 481
G+ TKYY V A +N E S
Sbjct: 57 TNYTDTGVATGTKYYYVVSAVSNGVETLNS 86
Score = 31.6 bits (72), Expect = 0.16
Identities = 16/99 (16%), Positives = 32/99 (32%), Gaps = 13/99 (13%)
Query: 179 PPGLPGGVQVVEVHKTSATIQWTDGATNGRPITHYKIIARTNWNSTWFNVSEHVIGKEVD 238
P P G+ V + + T T A G Y + T + ++ ++
Sbjct: 4 APAFPTGLSAV-LDSSGNTANLTWNAAPG--ANSYNVKRSTKSGGPYTTIATNITS---T 57
Query: 239 RYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPS 277
YT + + + Y + V A + S+ +
Sbjct: 58 NYT-------DTGVATGTKYYYVVSAVSNGVETLNSAEA 89
>2csp_A RIM-BP2, RIM binding protein 2; FN3 domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1
Length = 130
Score = 38.6 bits (89), Expect = 0.001
Identities = 20/129 (15%), Positives = 37/129 (28%), Gaps = 11/129 (8%)
Query: 271 GEPSSPSPQYNTPADKPYQAPSRIG-GGGGKIGDLSISWEPLPREKQNAPN----IYYKI 325
G S +++T P P + G + +SW P N Y +
Sbjct: 1 GSSGSSGVEFSTLPAGPPAPPQDVTVQAGVTPATIRVSWRPPVLTPTGLSNGANVTGYGV 60
Query: 326 FWRKKNDTEFQSETLKEYGNVGIAVVRIPSEFYYTEYEVKVQAINDVGPGPESEVVTIFS 385
+ + + E T V + V V+ ++ G +S V +
Sbjct: 61 YAKGQRVAEVIFPTA------DSTAVELVRLRSLEAKGVTVRTLSAQGESVDSAVAAVPP 114
Query: 386 AEDMPQVAP 394
+P
Sbjct: 115 ELLVPPTPH 123
Score = 37.0 bits (85), Expect = 0.004
Identities = 23/125 (18%), Positives = 36/125 (28%), Gaps = 7/125 (5%)
Query: 377 ESEVVTIFSAEDMPQVAPQGV-FSRGFNSTAINVTWNPIELIRENI--RGRLIGHRIKYW 433
S V + P PQ V G I V+W P L + + G+ +
Sbjct: 4 GSSGVEFSTLPAGPPAPPQDVTVQAGVTPATIRVSWRPPVLTPTGLSNGANVTGYGVYA- 62
Query: 434 KEDNPEETAVYYLSRTTRNWALIVGLQPDTKYYVKVMAYNNAGEGPESERYLERTYRKAP 493
V + + + +V L+ V V + GE +S P
Sbjct: 63 --KGQRVAEVIFPTADSTAV-ELVRLRSLEAKGVTVRTLSAQGESVDSAVAAVPPELLVP 119
Query: 494 QKPPS 498
P
Sbjct: 120 PTPHP 124
>2e6q_A Obscurin-like protein 1; IG-like domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 112
Score = 38.0 bits (88), Expect = 0.001
Identities = 11/76 (14%), Positives = 20/76 (26%), Gaps = 10/76 (13%)
Query: 117 WTHNGVRIGNMDLNELETPN-----INIDGGL--LEITNASFADAGEYECVVKSTVGKIS 169
W NG + + + P I G L + D+G +
Sbjct: 40 WFLNGEELKSNEPEGQVEPGALRYRIEQKGLQHRLILHAVKHQDSGALVGFS---CPGVQ 96
Query: 170 TKTTVIVEGPPGLPGG 185
+ ++ G G
Sbjct: 97 DSAALTIQESSGPSSG 112
>3og6_B Interleukin 28 receptor, alpha (interferon, lambd receptor);
helical bundle, fibronectin type III domain,
beta-sandwich, signaling, membrane; HET: BMA NAG; 2.10A
{Homo sapiens} PDB: 3og4_B*
Length = 226
Score = 39.7 bits (92), Expect = 0.001
Identities = 31/225 (13%), Positives = 68/225 (30%), Gaps = 20/225 (8%)
Query: 393 APQGV--FSRGFNSTAINVTWNPIELIRENIRGRLIGHRIKYWKEDNPEE-TAVYYLSRT 449
PQ V S+ F+ +TW P +++ + + Y V + T
Sbjct: 8 PPQNVTLLSQNFSVY---LTWLPGLGNPQDVT-----YFVAYQSSPTRRRWREVEECAGT 59
Query: 450 TR---NWALIVGLQPDTKYYVKVMAYNNAGEGPESERYLERTYRKAPQKPPSAVHIKGIN 506
+ + K+ +V + + + P E + PP + +
Sbjct: 60 KELLCSMMCLKKQDLYNKFKGRVRTVSPSSKSPWVESEYLDYLFEVEPAPPV-LVLTQTE 118
Query: 507 PTTVHVTWRYVSPSFEEEPIIGYKVRVWEVDQDMSRANDTIIPVGNTLDADIVDLSPGKR 566
+ Y P + Y+V W+ ++ + P G + + + +
Sbjct: 119 -EILSANATYQLPPCMPPLDLKYEVAFWKEGAG-NKTLFPVTPHGQPVQITL-QPAASEH 175
Query: 567 YHMRVLAFSNGGDGRMS--SPAITFQMGEEKEFKSGSPALYSAST 609
+ + + S S F + + SGS S ++
Sbjct: 176 HCLSARTIYTFSVPKYSKFSKPTCFLLEVPEANASGSSGGSSGTS 220
Score = 28.5 bits (63), Expect = 5.3
Identities = 10/78 (12%), Positives = 22/78 (28%), Gaps = 3/78 (3%)
Query: 302 GDLSISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETLKEYGNVGIAVVRIPSEFYYTE 361
LS + ++ Y++ + K+ +TL G V
Sbjct: 119 EILSANATYQLPPCMPPLDLKYEVAFWKEGAGN---KTLFPVTPHGQPVQITLQPAASEH 175
Query: 362 YEVKVQAINDVGPGPESE 379
+ + + I S+
Sbjct: 176 HCLSARTIYTFSVPKYSK 193
>3udw_C Poliovirus receptor; PVR tigit IGSF signal transduction immunology,
IGSF, cell SU receptor signalling, glycosylation,
membrane protein; HET: NAG; 2.90A {Homo sapiens}
Length = 118
Score = 36.7 bits (85), Expect = 0.003
Identities = 10/38 (26%), Positives = 12/38 (31%), Gaps = 1/38 (2%)
Query: 144 LEITNASFADAGEYEC-VVKSTVGKISTKTTVIVEGPP 180
L + D G Y C V G S + V P
Sbjct: 81 LRMFGLRVEDEGNYTCLFVTFPQGSRSVDIWLRVLAKP 118
Score = 36.3 bits (84), Expect = 0.005
Identities = 20/101 (19%), Positives = 30/101 (29%), Gaps = 27/101 (26%)
Query: 5 GGNVTIFC-----NPEAAPKPKFVWKKD-------------GNIIGSGGRRKI------- 39
G +VT+ C N E + W + G R +
Sbjct: 15 GDSVTLPCYLQVPNMEVTHVSQLTWARHGESGSMAVFHQTQGPSYSESKRLEFVAARLGA 74
Query: 40 -FENGNLLISPVSRDDSGIYSC-TATNVHGMDESKGRLIVL 78
N +L + + +D G Y+C T G L VL
Sbjct: 75 ELRNASLRMFGLRVEDEGNYTCLFVTFPQGSRSVDIWLRVL 115
>1k85_A Chitinase A1; fibronectin type III domain, chitin binding domain,
carbohydrase, horizontal gene transfer, hydrolase; NMR
{Bacillus circulans} SCOP: b.1.2.1
Length = 88
Score = 36.1 bits (84), Expect = 0.004
Identities = 17/98 (17%), Positives = 33/98 (33%), Gaps = 14/98 (14%)
Query: 492 APQKPPSAVHIKGINPTTVHVTWRYVSPSFEEEPIIGYKVRVWEVDQDMSRANDTIIPVG 551
AP P+ + +++ ++W + S + + GY V +
Sbjct: 3 APT-APTNLASTAQTTSSITLSW---TASTDNVGVTGYDVYN----------GTALATTV 48
Query: 552 NTLDADIVDLSPGKRYHMRVLAFSNGGDGRMSSPAITF 589
A I L+ Y V A G+ +S A++
Sbjct: 49 TGTTATISGLAADTSYTFTVKAKDAAGNVSAASNAVSV 86
Score = 35.3 bits (82), Expect = 0.007
Identities = 20/105 (19%), Positives = 33/105 (31%), Gaps = 28/105 (26%)
Query: 179 PPGLPGGVQVVEVHKTSATIQWTDGATNGRPITHYKI----IARTNWNSTWFNVSEHVIG 234
P P + +S T+ WT +T+ +T Y + T T +
Sbjct: 3 APTAPTNLASTAQTTSSITLSWT-ASTDNVGVTGYDVYNGTALATTVTGTTATI------ 55
Query: 235 KEVDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPSPQ 279
+G L ++Y F V A + G S+ S
Sbjct: 56 ------SG---------LAADTSYTFTVKAKD--AAGNVSAASNA 83
Score = 34.9 bits (81), Expect = 0.008
Identities = 22/90 (24%), Positives = 30/90 (33%), Gaps = 26/90 (28%)
Query: 393 APQGVFSRGFNSTAINVTWNPIELIRENIRGRLIGHRIKYWKEDNPEETA--VY----YL 446
AP + S +++I ++W DN T VY
Sbjct: 6 APTNLASTAQTTSSITLSWTAST--------------------DNVGVTGYDVYNGTALA 45
Query: 447 SRTTRNWALIVGLQPDTKYYVKVMAYNNAG 476
+ T A I GL DT Y V A + AG
Sbjct: 46 TTVTGTTATISGLAADTSYTFTVKAKDAAG 75
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 39.3 bits (91), Expect = 0.005
Identities = 86/571 (15%), Positives = 145/571 (25%), Gaps = 237/571 (41%)
Query: 40 FENGNLLISPVSRDDSGIYSCTAT---NVHGMDESKGRLIVLHGPSYYEQLPPKITIAAH 96
FEN L +D I++ A LI +Y I A
Sbjct: 91 FENCYL-----EGND--IHALAAKLLQENDTTLVKTKELIK----NYITAR-----IMAK 134
Query: 97 RNLQLRCSAHTEELLDVAYIWTHNGVRI-------GNMD--LNELETPNINIDGGLLEIT 147
R L ++ GN D EL L +
Sbjct: 135 RPFD---KKSNSALFRAV---GEGNAQLVAIFGGQGNTDDYFEELRD--------LYQT- 179
Query: 148 NASFADAGEYECVVKSTVGKISTKTTVIVEGPPG----LPGGVQVVEVHKTSATIQWTDG 203
Y +V + + + ++ G+ + ++W +
Sbjct: 180 ---------YHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNI---------LEWLEN 221
Query: 204 ATNGRPITHYKIIARTNWNSTWFNVSEHVIGKEVDRYTGRKEASIENVLVPWSTYEFKVI 263
+N P Y + +S +IG ++ + Y V+
Sbjct: 222 PSN-TPDKDYLLSIP---------ISCPLIG-----------------VIQLAHY---VV 251
Query: 264 AGNELGYGEPSSPSPQYNTPADKPYQAPSRIGGGGGKIGDL--------SISWEPLPREK 315
LG+ TP + S + G G L + SWE
Sbjct: 252 TAKLLGF-----------TPG----ELRSYLKGATGHSQGLVTAVAIAETDSWESF---F 293
Query: 316 QNAPNIYYKIFWRKKNDTEFQSETLKEYGNVGIAVVRIPSEFYYTEYEVKVQAINDVGPG 375
+ +F+ + Y N + PS ++ + G
Sbjct: 294 VSVRKAITVLFF-------IGVRCYEAYPNTSLP----PSI---------LEDSLENNEG 333
Query: 376 PESEVVTIFSAEDMPQVAPQGVFSRGFNSTAINVTWNPIELIRENIRGRLIGHRIKYWKE 435
S P ++ I Y +
Sbjct: 334 VPS-----------PMLS---------------------------ISNLTQEQVQDYVNK 355
Query: 436 DN---PEETAVY-YLSRTTRNWALIVGLQPDTKYYVKVMAYNNAGEGPESERYLERTYRK 491
N P V L +N L+V +G P+S L T RK
Sbjct: 356 TNSHLPAGKQVEISLVNGAKN--LVV-----------------SGP-PQSLYGLNLTLRK 395
Query: 492 --AP------QKPPSAVHIKGIN---PTTV--HVTWRYVSPSFEEEPIIGYKVRVWEVDQ 538
AP + P S +K N P H + P+ + +++
Sbjct: 396 AKAPSGLDQSRIPFSERKLKFSNRFLPVASPFHSH--LLVPASDL------------INK 441
Query: 539 DMSRANDTI------IPVGNTLD-ADIVDLS 562
D+ + N + IPV +T D +D+ LS
Sbjct: 442 DLVKNNVSFNAKDIQIPVYDTFDGSDLRVLS 472
Score = 36.2 bits (83), Expect = 0.043
Identities = 86/478 (17%), Positives = 138/478 (28%), Gaps = 188/478 (39%)
Query: 237 VDRYTGR----KEASIE-NVLVPWSTY--------EFKVI--------AGNELGYGEPSS 275
+D Y+ R S+E +LVP +++ +F I A ++ EP++
Sbjct: 1 MDAYSTRPLTLSHGSLEHVLLVPTASFFIASQLQEQFNKILPEPTEGFAADD----EPTT 56
Query: 276 PSP------QYNTPADKPYQAPSRIGG-------------GGGKI----GDLSISWEPLP 312
P+ Y + +P + G I L +
Sbjct: 57 PAELVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDTTL 116
Query: 313 REKQNAPNIYYK--IFWRKKNDTEFQSETLK--EYGNVGIAVVRIPSEF--------Y-- 358
+ + Y I ++ D + S + GN + + F Y
Sbjct: 117 VKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAI-----FGGQGNTDDYFE 171
Query: 359 -----YTEYEVKVQA-INDVGPGPESEVVTIFSAEDMPQVAPQGVFSRGFNSTAINVTWN 412
Y Y V V I + T AE VF++G N
Sbjct: 172 ELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEK--------VFTQGLN--------- 214
Query: 413 PIELIRENIRGRLIGHRIKYWKEDNPEET-AVYYLSRTTRNWALIVGLQPDTKYYV--KV 469
I W E NP T YL + LI +Q Y V K+
Sbjct: 215 -----------------ILEWLE-NPSNTPDKDYLLSIPISCPLIGVIQL-AHYVVTAKL 255
Query: 470 MAYNNAGEGPESERYLERTYRKAPQKPPSAVHIKGINPTTVHV----TWRYVSPSFEEEP 525
+ + P R + + H +G+ T V + +W SF
Sbjct: 256 LGFT-----PGELRSYLKG---------ATGHSQGL-VTAVAIAETDSW----ESFFVSV 296
Query: 526 I--------IGYKVRVWE----------VDQDMSRANDTIIP------VGNTLDA--DIV 559
IG VR +E + +D S N+ +P T + D V
Sbjct: 297 RKAITVLFFIG--VRCYEAYPNTSLPPSILED-SLENNEGVPSPMLSISNLTQEQVQDYV 353
Query: 560 D-----LSPGKRYHMRVLAFSNGGDGRMSSPAITFQMGEEKEFKSGSP-ALYSASTTL 611
+ L GK+ ++ NG + SG P +LY + TL
Sbjct: 354 NKTNSHLPAGKQVE---ISLVNGAK--------NLVV-------SGPPQSLYGLNLTL 393
Score = 33.5 bits (76), Expect = 0.27
Identities = 32/226 (14%), Positives = 57/226 (25%), Gaps = 90/226 (39%)
Query: 13 NPEAAPKPKFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYS----CTATNVHGM 68
NP P + LL P+S G+ + G
Sbjct: 221 NPSNTPDKDY----------------------LLSIPISCPLIGVIQLAHYVVTAKLLGF 258
Query: 69 ------DESKGRLIVLHG-------------PSYYEQLPPKITIAAHRNLQLRC----SA 105
KG G S++ + IT+ + +RC
Sbjct: 259 TPGELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFF--IGVRCYEAYPN 316
Query: 106 HTEELLDVAYIWTHN--------GVRIGNMDLNELETPNINIDGGLLEITNASFADAGEY 157
+ + +N + N+ +++ + TN+ +
Sbjct: 317 TSLPPSILEDSLENNEGVPSPMLSIS--NLTQEQVQD--------YVNKTNSHLPAGKQV 366
Query: 158 ECVVKSTVGKIS---TKTTVIVEGPP----GLPGGVQVVEVHKTSA 196
E IS ++V GPP GL + + K A
Sbjct: 367 E---------ISLVNGAKNLVVSGPPQSLYGL-----NLTLRKAKA 398
Score = 31.2 bits (70), Expect = 1.3
Identities = 44/241 (18%), Positives = 72/241 (29%), Gaps = 88/241 (36%)
Query: 13 NPEAAPKPKFVWKK-DG-----------NII------------GSGGRRKIFEN------ 42
+AA + VW + D +I+ G G+R I EN
Sbjct: 1638 TSKAA---QDVWNRADNHFKDTYGFSILDIVINNPVNLTIHFGGEKGKR-IRENYSAMIF 1693
Query: 43 -----GNLLISPVSRD-DSGIYSCTATNVHGMDESKGRL---------IVLHGPSYYEQL 87
G L + ++ + S T KG L + L + +E L
Sbjct: 1694 ETIVDGKLKTEKIFKEINEHSTSYT------FRSEKGLLSATQFTQPALTLMEKAAFEDL 1747
Query: 88 ------PPKITIAAHRNL----QLRCSA---HTEELLDVAYIWTHNGVRIGNMDLNELE- 133
P T A H +L L A E L++V + R G +
Sbjct: 1748 KSKGLIPADATFAGH-SLGEYAALASLADVMSIESLVEVVFY------R-GMTMQVAVPR 1799
Query: 134 TPNINIDGGLLEITNASFADAGEYECVVKSTVGKISTKTTVIVE-----GPPGLPGGVQV 188
+ G++ I A + E ++ V ++ +T +VE Q
Sbjct: 1800 DELGRSNYGMIAINPGRVAASFSQE-ALQYVVERVGKRTGWLVEIVNYNVE-----NQQY 1853
Query: 189 V 189
V
Sbjct: 1854 V 1854
>3kgr_A LAIR-1, hlair1, leukocyte-associated immunoglobulin-like
receptor; IG-like domain, cell membrane, glycoprotein;
1.80A {Homo sapiens} PDB: 3rp1_A
Length = 106
Score = 35.8 bits (83), Expect = 0.006
Identities = 11/63 (17%), Positives = 19/63 (30%), Gaps = 10/63 (15%)
Query: 5 GGNVTIFC--NPEAAPKPKFVWKKDGNIIGSGGRRKIFENG-----NLLISPVSRDDSGI 57
G +VT C F +++ + + I VS ++G
Sbjct: 23 GSHVTFVCRGPVGVQ---TFRLERESRSTYNDTEDVSQASPSESEARFRIDSVSEGNAGP 79
Query: 58 YSC 60
Y C
Sbjct: 80 YRC 82
Score = 28.1 bits (63), Expect = 2.9
Identities = 13/83 (15%), Positives = 26/83 (31%), Gaps = 12/83 (14%)
Query: 85 EQLPPKITIAAH--------RNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPN 136
E+ P+ +I+A ++ C + R D ++ +
Sbjct: 4 EEDLPRPSISAEPGTVIPLGSHVTFVCRGPVG---VQTFRLERES-RSTYNDTEDVSQAS 59
Query: 137 INIDGGLLEITNASFADAGEYEC 159
+ I + S +AG Y C
Sbjct: 60 PSESEARFRIDSVSEGNAGPYRC 82
>1pko_A Myelin oligodendrocyte glycoprotein; IGV-domain, immune system;
1.45A {Rattus norvegicus} SCOP: b.1.1.1 PDB: 1pkq_E
3csp_A 1py9_A
Length = 139
Score = 36.1 bits (83), Expect = 0.008
Identities = 11/37 (29%), Positives = 15/37 (40%)
Query: 144 LEITNASFADAGEYECVVKSTVGKISTKTTVIVEGPP 180
L I N F+D G Y C + + + VE P
Sbjct: 87 LRIQNVRFSDEGGYTCFFRDHSYQEEAAVELKVEDPF 123
Score = 27.2 bits (60), Expect = 8.4
Identities = 10/33 (30%), Positives = 14/33 (42%)
Query: 45 LLISPVSRDDSGIYSCTATNVHGMDESKGRLIV 77
L I V D G Y+C + +E+ L V
Sbjct: 87 LRIQNVRFSDEGGYTCFFRDHSYQEEAAVELKV 119
>1eaj_A Coxsackie virus and adenovirus receptor; virus/viral protein
receptor, immunoglobulin V domain fold, symmetric dimer;
1.35A {Homo sapiens} SCOP: b.1.1.1 PDB: 1f5w_A 2j12_B
2j1k_A 2wbw_B* 2w9l_A* 1rsf_A 1jew_R 1kac_B 1p69_B
1p6a_B
Length = 126
Score = 35.6 bits (82), Expect = 0.012
Identities = 9/37 (24%), Positives = 17/37 (45%)
Query: 42 NGNLLISPVSRDDSGIYSCTATNVHGMDESKGRLIVL 78
+ ++ ++ + D G Y C G+ K L+VL
Sbjct: 88 DASINVTNLQLSDIGTYQCKVKKAPGVANKKIHLVVL 124
Score = 34.5 bits (79), Expect = 0.023
Identities = 11/33 (33%), Positives = 18/33 (54%)
Query: 144 LEITNASFADAGEYECVVKSTVGKISTKTTVIV 176
+ +TN +D G Y+C VK G + K ++V
Sbjct: 91 INVTNLQLSDIGTYQCKVKKAPGVANKKIHLVV 123
>1uc6_A CNTF receptor, ciliary neurotrophic factor receptor alpha;
cytokine, leukemia inhibitory factor, cytokine receptor;
NMR {Homo sapiens} SCOP: b.1.2.1
Length = 109
Score = 35.0 bits (80), Expect = 0.013
Identities = 12/72 (16%), Positives = 23/72 (31%), Gaps = 4/72 (5%)
Query: 403 NSTAINVTWNPIELIRENIRGRLIGHRIKYWKEDNPEETAVYYLSRTTRNWALIVGLQPD 462
N + VTW + + ++Y + V + T I
Sbjct: 22 NPRRLEVTWQTPSTW-PDPESFPLKFFLRYRPLILDQWQHVELSNGT---AHTITDAYAG 77
Query: 463 TKYYVKVMAYNN 474
+Y ++V A +N
Sbjct: 78 KEYIIQVAAKDN 89
>2w1n_A O-GLCNACASE NAGJ; hexosaminidase, glycoside hydrolase, fibronectin
type-III, beta-N-acetylglucosaminidase, cohesin,
hydrolase; 1.80A {Clostridium perfringens}
Length = 238
Score = 35.7 bits (81), Expect = 0.028
Identities = 38/262 (14%), Positives = 71/262 (27%), Gaps = 44/262 (16%)
Query: 231 HVIGKEVDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPSPQYNTPADKPYQA 290
H KE TG + E V + + Y
Sbjct: 3 HGKLKEAAEVTGSVSLEALEEVQVGENIEVGVGIDELVNAEAFAYDFTLNYDENAFEYVE 62
Query: 291 PSRIGG----------GGGKIGDLSISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETL 340
G G ++ S++ EPLP ++ A ++E
Sbjct: 63 AISDDGVFVNAKKIEDGKVRVLVSSLTGEPLPAKEVLA-------------KVVLRAEAK 109
Query: 341 KEYGNVGIAVVRIPSEFYYTEYEVKVQAINDVGPGPESEVVTIFSAEDMPQVAPQGVFSR 400
E N+ + + ++ ++ + ++ ++ + +
Sbjct: 110 TEGSNLSVTNSSVGDGEGLVH---------EIAGTEKTVNIIEGTSPEIVVNPVRDFKAS 160
Query: 401 GFNSTAINVTWNPIELIRENIRGRLIGHRIKYWKEDNPEETAVYYLSRTTRNWALIVGLQ 460
N + VTW E E + G ++ K E +ET+ L
Sbjct: 161 EINKKNVTVTWTEPETT-EGLEGYILYKDGKKVAEIGKDETSYT-----------FKKLN 208
Query: 461 PDTKYYVKVMAYNNAGEGPESE 482
T Y K+ A + GE E
Sbjct: 209 RHTIYNFKIAAKYSNGEVSSKE 230
Score = 33.8 bits (76), Expect = 0.12
Identities = 33/244 (13%), Positives = 63/244 (25%), Gaps = 25/244 (10%)
Query: 345 NVGIAVVRIPSE-FYYTEYEVKVQAINDVGPGPESEVVTI-FSAEDMPQVAPQGVFSRGF 402
G + E EV V V + T+ + V
Sbjct: 12 VTGSVSLEALEEVQVGENIEVGVGIDELVNAEAFAYDFTLNYDENAFEYVEAI------- 64
Query: 403 NSTAINVTWNPIELIRENIRGRLIGHRIKYWKEDNPEETAVYYLSRTTRNWALIVGLQPD 462
+ + V IE + + + KE + N ++ D
Sbjct: 65 SDDGVFVNAKKIEDGKVRVLVSSLTGEPLPAKEVLAKVVLRAEAKTEGSNLSVTNSSVGD 124
Query: 463 TKYYVKVMAYNNAGEGPESERYLERTYRKAPQKPPSAVHIKGINPTTVHVTWRYVSPSFE 522
+ V ++ +E T + P IN V VTW +
Sbjct: 125 GEGLVH-----EIAGTEKTVNIIEGTSPEIVVNPVRDFKASEINKKNVTVTW---TEPET 176
Query: 523 EEPIIGYKVRVWEVDQDMSRANDTIIPVGNTLDADIVDLSPGKRYHMRVLAFSNGGDGRM 582
E + GY + +D + + + L+ Y+ ++ A + G+
Sbjct: 177 TEGLEGY-----ILYKDGKKVAEI---GKDETSYTFKKLNRHTIYNFKIAAKYSNGEVSS 228
Query: 583 SSPA 586
Sbjct: 229 KESL 232
>1a64_A CD2; domain swapping, hinge loop, oligomer evolution; 2.00A
{Rattus norvegicus} SCOP: b.1.1.1 PDB: 1a7b_A 1cdc_B
1a6p_A 1t6w_A
Length = 97
Score = 33.5 bits (76), Expect = 0.031
Identities = 19/74 (25%), Positives = 32/74 (43%), Gaps = 8/74 (10%)
Query: 3 GEGGNVTIFCNPEAAPKPKFVWKKDGNIIGS--------GGRRKIFENGNLLISPVSRDD 54
G G N+ I + W++ ++ G +I NG+L I ++RDD
Sbjct: 11 GHGINLNIPNFQMTDDIDEVRWERGSTLVAEFKRKPFLKSGAFEILANGDLKIKNLTRDD 70
Query: 55 SGIYSCTATNVHGM 68
SG Y+ T + +G
Sbjct: 71 SGTYNVTVYSTNGT 84
>3pv7_A B7-H6, IG-like domain-containing protein
DKFZP686O24166/DKFZP686I21167; NK cell receptor,
receptor-ligand complex, immune system; HET: NAG; 2.00A
{Homo sapiens} PDB: 3pv6_A*
Length = 248
Score = 35.4 bits (81), Expect = 0.038
Identities = 11/37 (29%), Positives = 14/37 (37%)
Query: 144 LEITNASFADAGEYECVVKSTVGKISTKTTVIVEGPP 180
L + +AGEY C V T K + V P
Sbjct: 84 LRLPGIQLEEAGEYRCEVVVTPLKAQGTVQLEVVASP 120
Score = 34.3 bits (78), Expect = 0.090
Identities = 20/150 (13%), Positives = 49/150 (32%), Gaps = 13/150 (8%)
Query: 42 NGNLLISPVSRDDSGIYSCTATNVHGMDESKGRLIVLHGPSYYEQLPPKITIAAHRNLQL 101
+ +L + + +++G Y C + +L V+ P+ L ++ + + +
Sbjct: 81 DASLRLPGIQLEEAGEYRCEVVVTPLKAQGTVQLEVVASPA-SRLLLDQVGMKENEDK-Y 138
Query: 102 RCSAHTEELLDVAYIWTHNGVRIGNMDLN----ELETPNINIDG-----GLLEITNASFA 152
C + + W + + N+DG L++ ++
Sbjct: 139 MCESSGFYPEAINITWEKQTQKFPHPIEISEDVITGPTIKNMDGTFNVTSCLKLNSSQED 198
Query: 153 DAGEYECVV--KSTVGKISTKTTVIVEGPP 180
Y+CVV S + + T+
Sbjct: 199 PGTVYQCVVRHASLHTPLRSNFTLTAARHS 228
>2dle_A Receptor-type tyrosine-protein phosphatase ETA; protein-tyrosine
phosphatase ETA, R-PTP-ETA, HPTP ETA, protein-tyrosine
phosphatase receptor type J; NMR {Homo sapiens}
Length = 104
Score = 33.5 bits (76), Expect = 0.045
Identities = 14/86 (16%), Positives = 28/86 (32%), Gaps = 9/86 (10%)
Query: 495 KPPSAVHIKGINPTTVHVTWRYVSPSFEEEPIIGYKVRVWEVDQDMSRANDTIIPVGNTL 554
V I+ T++ + W + E Y ++ V + +N + +
Sbjct: 9 IQVFDVTAVNISATSLTLIW----KVSDNESSSNYTYKI-HVAGETDSSNLNV----SEP 59
Query: 555 DADIVDLSPGKRYHMRVLAFSNGGDG 580
A I L Y++ V +G
Sbjct: 60 RAVIPGLRSSTFYNITVCPVLGDIEG 85
Score = 30.0 bits (67), Expect = 0.73
Identities = 15/77 (19%), Positives = 28/77 (36%), Gaps = 10/77 (12%)
Query: 403 NSTAINVTWNPIELIRENIRGRLIGHRIKYWKEDNPEETAVYYLSRTTRNWALIVGLQPD 462
++T++ + W +N ++I E + V + A+I GL+
Sbjct: 20 SATSLTLIWKV----SDNESSSNYTYKIHVAGETDSSNLNV------SEPRAVIPGLRSS 69
Query: 463 TKYYVKVMAYNNAGEGP 479
T Y + V EG
Sbjct: 70 TFYNITVCPVLGDIEGT 86
Score = 27.3 bits (60), Expect = 6.0
Identities = 17/97 (17%), Positives = 24/97 (24%), Gaps = 16/97 (16%)
Query: 180 PGLPGGVQVVEVHKTSATIQWTDGATNGRPITHYKIIARTNWNSTWFNVSEHVIGKEVDR 239
V V + TS T+ W N +S+ + HV G+
Sbjct: 8 AIQVFDVTAVNISATSLTLIWK---------------VSDNESSSNYTYKIHVAGETDSS 52
Query: 240 YTGRKEASIE-NVLVPWSTYEFKVIAGNELGYGEPSS 275
E L + Y V G P
Sbjct: 53 NLNVSEPRAVIPGLRSSTFYNITVCPVLGDIEGTPGF 89
>2gy5_A Angiopoietin-1 receptor; ligand-binding domain, transferase; HET:
NAG NDG; 2.90A {Homo sapiens} PDB: 2gy7_B*
Length = 423
Score = 35.5 bits (81), Expect = 0.047
Identities = 18/110 (16%), Positives = 32/110 (29%), Gaps = 12/110 (10%)
Query: 53 DDSGIYSCTATNVHGMDESKGRLIVLHGPSYYEQLPPKITIAAHRNLQLRCSAHTEELLD 112
+G Y C R+ + LP +T+ + + S + +
Sbjct: 73 KINGAYFCEGRV----RGEAIRIRTMKMRQQASFLPATLTMTVDKGDNVNISFKKVLIKE 128
Query: 113 VAYIWTHNGVRIGNMDLNELETPNINIDGGL-LEITNASFADAGEYECVV 161
+ NG I P + L + + +A DAG Y
Sbjct: 129 EDAVIYKNGSFI-------HSVPRHEVPDILEVHLPHAQPQDAGVYSARY 171
Score = 34.3 bits (78), Expect = 0.11
Identities = 11/61 (18%), Positives = 21/61 (34%), Gaps = 4/61 (6%)
Query: 120 NGVRIGNMDLNELETPNINIDGGLLEITNASFADAGEYECVVKSTVGKISTKTTVIVEGP 179
+G + D N + + I D+G + C V + G + + V+
Sbjct: 367 DGTVLHPKDFNH----TDHFSVAIFTIHRILPPDSGVWVCSVNTVAGMVEKPFNISVKVL 422
Query: 180 P 180
P
Sbjct: 423 P 423
Score = 30.8 bits (69), Expect = 1.4
Identities = 18/80 (22%), Positives = 31/80 (38%)
Query: 5 GGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTATN 64
G NV I + V K+G+ I S R ++ + + + D+G+YS
Sbjct: 114 GDNVNISFKKVLIKEEDAVIYKNGSFIHSVPRHEVPDILEVHLPHAQPQDAGVYSARYIG 173
Query: 65 VHGMDESKGRLIVLHGPSYY 84
+ + RLIV +
Sbjct: 174 GNLFTSAFTRLIVRRCEAQK 193
Score = 30.8 bits (69), Expect = 1.5
Identities = 10/31 (32%), Positives = 15/31 (48%)
Query: 47 ISPVSRDDSGIYSCTATNVHGMDESKGRLIV 77
I + DSG++ C+ V GM E + V
Sbjct: 389 IHRILPPDSGVWVCSVNTVAGMVEKPFNISV 419
>2qsq_A Carcinoembryonic antigen-related cell adhesion MO; glycoprotein,
GPI-anchor, immunoglobulin DOMA lipoprotein, membrane;
1.95A {Homo sapiens} PDB: 2qst_A 2ver_N* 2gk2_A
Length = 111
Score = 33.4 bits (76), Expect = 0.053
Identities = 13/45 (28%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
Query: 34 GGRRKIFENGNLLISPVSRDDSGIYSCTATNVH-GMDESKGRLIV 77
GR I+ N +LLI + ++D+G Y+ +E+ G+ V
Sbjct: 63 SGREIIYPNASLLIQNIIQNDAGFYTLHVIKSDLVNEEATGQFRV 107
>2aw2_A B and T lymphocyte attenuator; IGI domain, IGG domain, TNFRSF,
protein-protein complex, IMM system; HET: NAG FUL; 2.80A
{Homo sapiens} SCOP: b.1.1.1
Length = 120
Score = 33.3 bits (75), Expect = 0.063
Identities = 15/68 (22%), Positives = 25/68 (36%), Gaps = 8/68 (11%)
Query: 17 APKPKFVWKK--DGNIIGSGGRRKIFENGN------LLISPVSRDDSGIYSCTATNVHGM 68
A +P W K + R+ ++ L PV +D+G Y C+A +
Sbjct: 39 ANRPHVTWCKLNGTTCVKLEDRQTSWKEEKNISFFILHFEPVLPNDNGSYRCSANFQSNL 98
Query: 69 DESKGRLI 76
ES +
Sbjct: 99 IESHSTTL 106
>3bn3_B ICAM-5, intercellular adhesion molecule 5, telencephalin; I domain,
integrin, allosteric mobility, cell adhesi immune
system; HET: NAG; 2.10A {Homo sapiens}
Length = 196
Score = 34.3 bits (78), Expect = 0.076
Identities = 7/96 (7%), Positives = 20/96 (20%), Gaps = 12/96 (12%)
Query: 88 PPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEIT 147
P + +L L CS + + + ++
Sbjct: 9 PRVAFVERGGSLWLNCSTNCPRPERGGLETSLRRNGTQR-----------GLRWLARQLV 57
Query: 148 NASFADAGEYECVVKSTVGKISTKTTVIVEGPPGLP 183
+ + C + + + + P
Sbjct: 58 DIR-EPETQPVCFFRCARRTLQARGLIRTFQRPDRV 92
Score = 31.6 bits (71), Expect = 0.58
Identities = 8/69 (11%), Positives = 13/69 (18%), Gaps = 8/69 (11%)
Query: 4 EGGNVTIFC---NPEAAPKPKFVWKKDGNIIGSGGRRKIFENGN-----LLISPVSRDDS 55
G N T+ C + + + D
Sbjct: 103 VGENFTLSCRVPGAGPRASLTLTLLRGAQELIRRSFAGEPPRARGAVLTATVLARREDHG 162
Query: 56 GIYSCTATN 64
+SC A
Sbjct: 163 ANFSCRAEL 171
>2ptt_A CD48 antigen; CD244, CD48, NK cell receptor, X-RAY, immune system;
1.63A {Mus musculus} PDB: 2ptv_A
Length = 110
Score = 32.1 bits (73), Expect = 0.12
Identities = 22/92 (23%), Positives = 29/92 (31%), Gaps = 18/92 (19%)
Query: 4 EGGNVTIFCN-PEAAPKPKFVWKKDGN----IIGSGGRRKIF------------ENGNLL 46
G NVT+ + P + W N + IF NG L
Sbjct: 17 TGSNVTLKIHKDPLGPYRRITWLHTKNQKILEYNYNSTKTIFESEFKGRVYLEENNGALH 76
Query: 47 ISPVSRDDSGIYSCTATNVHGMDESKGRLIVL 78
IS V ++D G Y +E K L V
Sbjct: 77 ISNVRKEDKGTYYMR-VLRETENELKITLEVF 107
Score = 27.9 bits (62), Expect = 4.3
Identities = 21/101 (20%), Positives = 30/101 (29%), Gaps = 12/101 (11%)
Query: 89 PKITIAAHRNLQLRCSAHTEELLDVAYIWTHN-GVRIGNMDLNELETPN---------IN 138
P I N+ L+ W H +I + N +T +
Sbjct: 11 PDINAYTGSNVTLKIHKDPLGPYRR-ITWLHTKNQKILEYNYNSTKTIFESEFKGRVYLE 69
Query: 139 IDGGLLEITNASFADAGEYECVVKSTVGKISTKTTVIVEGP 179
+ G L I+N D G Y V K T+ V P
Sbjct: 70 ENNGALHISNVRKEDKGTYYMRVLRETEN-ELKITLEVFDP 109
>3bik_B Programmed cell death protein 1; CO-stimulation, receptor-ligand
complex, immunoglobulin-like sandwich, T cell, B cell,
programmed death; 2.65A {Mus musculus} SCOP: b.1.1.1
Length = 134
Score = 32.1 bits (73), Expect = 0.17
Identities = 19/84 (22%), Positives = 30/84 (35%), Gaps = 21/84 (25%)
Query: 4 EGGNVTIFCN----------------PEAAPKPKFVWKKDGNIIGSGGRRKIFENGN--- 44
EG N T C+ P + + + + R +I + N
Sbjct: 23 EGANATFTCSLSNWSEDLMLNWNRLSPSNQTEKQAAFSNGLSQPVQDARFQIIQLPNRHD 82
Query: 45 --LLISPVSRDDSGIYSCTATNVH 66
+ I R+DSGIY C A ++H
Sbjct: 83 FHMNILDTRRNDSGIYLCGAISLH 106
>1ncn_A T lymphocyte activation antigen CD86; IG V, beta strands, immune
system; 2.70A {Homo sapiens} SCOP: b.1.1.1 PDB: 1i85_A
Length = 110
Score = 31.4 bits (71), Expect = 0.23
Identities = 6/21 (28%), Positives = 10/21 (47%)
Query: 144 LEITNASFADAGEYECVVKST 164
L + N D G Y+C++
Sbjct: 71 LRLHNLQIKDKGLYQCIIHHK 91
Score = 27.9 bits (62), Expect = 4.5
Identities = 5/20 (25%), Positives = 10/20 (50%)
Query: 41 ENGNLLISPVSRDDSGIYSC 60
++ L + + D G+Y C
Sbjct: 67 DSWTLRLHNLQIKDKGLYQC 86
>3noi_A Natural cytotoxicity triggering receptor 3; immune system, innate
immunity, immunoglobulin-like I2 type natural killer
cell activation; HET: 1PG; 1.84A {Homo sapiens} PDB:
3pv6_B*
Length = 120
Score = 31.5 bits (71), Expect = 0.29
Identities = 18/102 (17%), Positives = 28/102 (27%), Gaps = 33/102 (32%)
Query: 4 EGGNVTIFCN----PEAAPKPKFVWKKDGNIIGSGGRRKIFENGN--------------- 44
EG + + C+ W +D +++
Sbjct: 21 EGSSAFLPCSFNASQGRLAIGSVTWFRDE----VVPGKEVRNGTPEFRGRLAPLASSRFL 76
Query: 45 ------LLISPVSRDDSGIYSCTATNVHGMDESKG---RLIV 77
L I V D+ IY C V G+ G RL+V
Sbjct: 77 HDHQAELHIRDVRGHDASIYVC-RVEVLGLGVGTGNGTRLVV 117
>3bp6_A Programmed cell death protein 1; PD-1, PD-L2, complex,
costimulation, glycoprotein, immunoglo domain,
membrane, transmembrane, receptor; 1.60A {Mus musculus}
PDB: 3rnk_A 3sbw_A 3bp5_A 1npu_A 3rnq_A
Length = 117
Score = 31.2 bits (71), Expect = 0.35
Identities = 18/84 (21%), Positives = 30/84 (35%), Gaps = 21/84 (25%)
Query: 4 EGGNVTIFCN----------------PEAAPKPKFVWKKDGNIIGSGGRRKIFENG---- 43
EG N T C+ P + + + + R +I +
Sbjct: 13 EGANATFTCSLSNWSEDLMLNWNRLSPSNQTEKQAAFSNGLSQPVQDARFQIIQLPNRHD 72
Query: 44 -NLLISPVSRDDSGIYSCTATNVH 66
++ I R+DSGIY C A ++H
Sbjct: 73 FHMNILDTRRNDSGIYLCGAISLH 96
>3r0n_A Poliovirus receptor-related protein 2; IG-domain, cell-adhesion
molecule, virus entry receptor, STR genomics,
PSI-biology; 1.30A {Homo sapiens}
Length = 128
Score = 31.1 bits (70), Expect = 0.41
Identities = 8/34 (23%), Positives = 12/34 (35%), Gaps = 1/34 (2%)
Query: 144 LEITNASFADAGEYEC-VVKSTVGKISTKTTVIV 176
L + + D G Y C G + T + V
Sbjct: 95 LALHGLTVEDEGNYTCEFATFPKGSVRGMTWLRV 128
Score = 29.2 bits (65), Expect = 1.8
Identities = 10/47 (21%), Positives = 17/47 (36%), Gaps = 1/47 (2%)
Query: 32 GSGGRRKIFENGNLLISPVSRDDSGIYSCT-ATNVHGMDESKGRLIV 77
++ L + ++ +D G Y+C AT G L V
Sbjct: 82 TGQDTEAELQDATLALHGLTVEDEGNYTCEFATFPKGSVRGMTWLRV 128
>2oyp_A Hepatitis A virus cellular receptor 2; TIM-3, T-cell
immunoglobulin mucin, signaling protein; 1.95A {Mus
musculus} PDB: 3kaa_A*
Length = 109
Score = 30.7 bits (69), Expect = 0.41
Identities = 14/82 (17%), Positives = 21/82 (25%), Gaps = 25/82 (30%)
Query: 4 EGGNVTIFCN---PEAAPKPKFVWKKDGNIIGSGGRRKIFENGN---------------- 44
G N + C+ P + W K + +
Sbjct: 8 VGKNAYLPCSYTLPTSGTLVPMCWGKGFCPWSQCTNELLRTDERNVTYQKSSRYQLKGDL 67
Query: 45 ------LLISPVSRDDSGIYSC 60
L+I V+ DD G Y C
Sbjct: 68 NKGDVSLIIKNVTLDDHGTYCC 89
Score = 28.4 bits (63), Expect = 2.6
Identities = 7/19 (36%), Positives = 10/19 (52%)
Query: 144 LEITNASFADAGEYECVVK 162
L I N + D G Y C ++
Sbjct: 74 LIIKNVTLDDHGTYCCRIQ 92
>1neu_A Myelin P0 protein; structural protein, glycoprotein, transmembrane,
phosphorylation, immunoglobulin fold, signal; 1.90A
{Rattus norvegicus} SCOP: b.1.1.1
Length = 124
Score = 31.1 bits (70), Expect = 0.41
Identities = 11/40 (27%), Positives = 21/40 (52%), Gaps = 3/40 (7%)
Query: 144 LEITNASFADAGEYECVVKST--VGKISTKTTVIV-EGPP 180
+ I N ++D G + C VK+ + +++ T+ V E P
Sbjct: 83 IVIHNLDYSDNGTFTCDVKNPPDIVGKTSQVTLYVFEKVP 122
Score = 29.6 bits (66), Expect = 1.4
Identities = 8/42 (19%), Positives = 17/42 (40%), Gaps = 2/42 (4%)
Query: 42 NGNLLISPVSRDDSGIYSCTATNVHGMDESKG--RLIVLHGP 81
+G+++I + D+G ++C N + L V
Sbjct: 80 DGSIVIHNLDYSDNGTFTCDVKNPPDIVGKTSQVTLYVFEKV 121
>2pnd_A V-SET and immunoglobulin domain containing 4; complement
receptor, IG-like domain, immune system; 1.00A {Mus
musculus} PDB: 2icc_A 2ice_S* 2icf_S*
Length = 119
Score = 30.7 bits (69), Expect = 0.42
Identities = 16/88 (18%), Positives = 25/88 (28%), Gaps = 24/88 (27%)
Query: 1 YAGEGGNVTIFC--NPEAAPKPKFV-WKKDGN-------IIGSGGRRKIFE--------- 41
G+V I C +P + V W + S G
Sbjct: 12 TGTWKGDVKIQCIYDPLRGYRQVLVKWLVRHGSDSVTIFLRDSTGDHIQQAKYRGRLKVS 71
Query: 42 -----NGNLLISPVSRDDSGIYSCTATN 64
+ +L I+ + DD Y+C T
Sbjct: 72 HKVPGDVSLQINTLQMDDRNHYTCEVTW 99
>2wqr_A IG epsilon chain C region; immune system, immunoglobulin domain,
glycoprotein; HET: NAG BMA MAN PG4; 1.90A {Homo sapiens}
PDB: 2y7q_B* 1o0v_A* 3h9y_A* 3h9z_A* 3ha0_A* 1fp5_A
1f6a_B 1g84_A
Length = 323
Score = 32.0 bits (72), Expect = 0.61
Identities = 26/202 (12%), Positives = 48/202 (23%), Gaps = 29/202 (14%)
Query: 5 GGNVTIFC-----NPEAAPKPKFVWKKDGNIIGSGGR--RKIFENGN------LLISPVS 51
+ + C P + W +DG ++ E L +S
Sbjct: 24 PPTIQLLCLVSGYTPGTI---QITWLEDGQVMDVDLSTASTTQEGELASTQSELTLSQKH 80
Query: 52 RDDSGIYSCTAT---NVHGMDESKGRLIVLHGPSYYEQLPPKITIAAHRNLQLRCSAH-- 106
Y+C T + K G S Y P + ++ + C
Sbjct: 81 WLSDRTYTCQVTYQGHTFEDSTKKCADSNPRGVSAYLSRPSPFDLFIRKSPTITCLVVDL 140
Query: 107 TEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGG-----LLEITNASFADAGEYECVV 161
V W+ G + +G L + + + Y+C V
Sbjct: 141 APSKGTVQLTWSRAS---GKPVNHSTRKEEKQRNGTLTVTSTLPVGTRDWIEGETYQCRV 197
Query: 162 KSTVGKISTKTTVIVEGPPGLP 183
+ + P
Sbjct: 198 THPHLPRALMRSTTKTSGPRAA 219
>3cxe_C Granulocyte-macrophage colony-stimulating factor subunit alpha;
GM-CSF, receptor complex, dodecamer, disease mutation,
glyco membrane; HET: NAG BMA; 3.30A {Homo sapiens}
Length = 120
Score = 30.4 bits (68), Expect = 0.67
Identities = 12/66 (18%), Positives = 24/66 (36%), Gaps = 1/66 (1%)
Query: 304 LSISWE-PLPREKQNAPNIYYKIFWRKKNDTEFQSETLKEYGNVGIAVVRIPSEFYYTEY 362
+ W+ P +K + + Y++ +KN L PS ++
Sbjct: 33 CLVRWKQPRTYQKLSYLDFQYQLDVHRKNTQPGTENLLINVSGDLENRYNFPSSEPRAKH 92
Query: 363 EVKVQA 368
VK++A
Sbjct: 93 SVKIRA 98
Score = 29.3 bits (65), Expect = 1.6
Identities = 12/72 (16%), Positives = 25/72 (34%), Gaps = 3/72 (4%)
Query: 402 FNSTAINVTWNPIELIRENIRGRLIGHRIKYWKEDNPEETAVYY--LSRTTRNWALIVGL 459
N+T V W + + +++ +++ T +S N
Sbjct: 28 CNTTHCLVRWKQ-PRTYQKLSYLDFQYQLDVHRKNTQPGTENLLINVSGDLENRYNFPSS 86
Query: 460 QPDTKYYVKVMA 471
+P K+ VK+ A
Sbjct: 87 EPRAKHSVKIRA 98
>2qfp_A Purple acid phosphatase; binuclear, Fe-Zn, hydrolase; HET: NAG NDG;
2.20A {Phaseolus vulgaris} SCOP: b.1.12.1 d.159.1.1 PDB:
2qfr_A* 1kbp_A* 3kbp_A* 4kbp_A*
Length = 424
Score = 31.6 bits (71), Expect = 0.70
Identities = 29/182 (15%), Positives = 54/182 (29%), Gaps = 41/182 (22%)
Query: 387 EDMPQVAPQGVFSRGFN-------------STAINVTWNPIELIRENIRGRLIGHRIKYW 433
DMP + G+N A+ ++W ++ + ++YW
Sbjct: 1 RDMPLDSDVFRVPPGYNAPQQVHITQGDLVGRAMIISWVTMDEPGSSA--------VRYW 52
Query: 434 KEDNPEETAVYYLSRTTR---------NWALIVGLQPDTKYYVKVMAYNNAGEGPESERY 484
E N + T R + I L+ +TKYY +V G + R+
Sbjct: 53 SEKNGRKRIAKGKMSTYRFFNYSSGFIHHTTIRKLKYNTKYYYEV------GLRNTTRRF 106
Query: 485 LERTYRKAPQKPPSAVHIKGINPTTVHVTWRYVSPSFEEEPIIGYKVRVWEVDQDMSRAN 544
T + P + G + + + K + D+S A+
Sbjct: 107 SFITPPQTGLDVPYTFGLIGDLGQSFDSNT-----TLSHYELSPKKGQTVLFVGDLSYAD 161
Query: 545 DT 546
Sbjct: 162 RY 163
>1wft_A 1700129L13RIK protein; FN3 domain, similar to HOST cell factor 2,
structural genomics, riken structural
genomics/proteomics initiative, RSGI; NMR {Mus musculus}
SCOP: b.1.2.1
Length = 123
Score = 30.3 bits (67), Expect = 0.79
Identities = 21/121 (17%), Positives = 34/121 (28%), Gaps = 12/121 (9%)
Query: 180 PGLPGGVQVVEVHKT--SATIQWTDGATNGRPITHYKI---IARTNWNSTWFNVSEHVIG 234
PG V + K + W + I Y I + I
Sbjct: 5 SSGPGAPSTVRISKNVDGIHLSWEPPTSPSGNILEYSAYLAIRTAQMQDNPSQLVFMRIY 64
Query: 235 KEVDRYTGRKEASIENVLVPWST---YEFKVIAGNELGYGEPSSPSPQYNTPADKPYQAP 291
+ + N + +++ F++ A NE GYG P+ Q P
Sbjct: 65 CGLKTSCTVTAGQLANAHIDYTSRPAIVFRISAKNEKGYG----PATQIRWLQGNSKSGP 120
Query: 292 S 292
S
Sbjct: 121 S 121
>2wng_A Tyrosine-protein phosphatase non-receptor type substrate 1; signal
regulatory protein alpha, immunoglobulin superfamily,
phosphoprotein; HET: NAG; 2.49A {Homo sapiens}
Length = 327
Score = 31.4 bits (71), Expect = 0.81
Identities = 23/151 (15%), Positives = 41/151 (27%), Gaps = 15/151 (9%)
Query: 45 LLISPVSRDDSGIYSCTA-----TNVHGMDESKGRLIVLHGPSYYEQLPPKITIAAHRNL 99
+ IS ++ D+G Y C + + L V PS P +
Sbjct: 76 ISISNITPADAGTYYCVKFRKGSPDTEFKSGAGTELSVRAKPSAPVVSGPAARATPQHTV 135
Query: 100 QLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGG-----LLEITNASFADA 154
C +H D+ W NG + + + + ++
Sbjct: 136 SFTCESHGFSPRDITLKWFKNGNELSD---FQTNVDPVGESVSYSIHSTAKVVLTREDVH 192
Query: 155 GEYECVV--KSTVGKISTKTTVIVEGPPGLP 183
+ C V + G T + E P
Sbjct: 193 SQVICEVAHVTLQGDPLRGTANLSETIRVPP 223
>2or8_A Hepatitis A virus cellular receptor 1 homolog; beta barrel,
immunoglobulin fold, IGV domain, TIM, immune system;
2.50A {Mus musculus}
Length = 116
Score = 29.9 bits (67), Expect = 0.88
Identities = 11/37 (29%), Positives = 17/37 (45%)
Query: 144 LEITNASFADAGEYECVVKSTVGKISTKTTVIVEGPP 180
L I N+ +D+G Y C V+ K T ++ P
Sbjct: 75 LTIENSVESDSGLYCCRVEIPGWFNDQKVTFSLQVKP 111
Score = 28.7 bits (64), Expect = 2.0
Identities = 16/80 (20%), Positives = 23/80 (28%), Gaps = 23/80 (28%)
Query: 4 EGGNVTIFCNPEAAPKPKFV-WKKDG--------NIIGSGGRRKIF------------EN 42
G VT+ C W + +I + G R +
Sbjct: 11 VGHPVTLPCTYSTYRGITTTCWGRGQCPSSACQNTLIWTNGHRVTYQKSSRYNLKGHISE 70
Query: 43 GN--LLISPVSRDDSGIYSC 60
G+ L I DSG+Y C
Sbjct: 71 GDVSLTIENSVESDSGLYCC 90
>1iam_A ICAM-1, CD54, intercellular adhesion molecule-1; rhinovirus
receptor, cell adhesion, integrin ligand, glycopr LFA-1
ligand, immunoglobulin fold; HET: NAG; 2.10A {Homo
sapiens} SCOP: b.1.1.3 b.1.1.4 PDB: 1ic1_A* 1d3l_A
1d3e_I 1d3i_I 3tcx_A
Length = 185
Score = 30.5 bits (68), Expect = 1.1
Identities = 6/64 (9%), Positives = 13/64 (20%), Gaps = 3/64 (4%)
Query: 4 EGGNVTIFC---NPEAAPKPKFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSC 60
G +T+ C + V + + + +SC
Sbjct: 100 VGKQLTLRCQVEGGAPRAQLTVVLLRGEKELKREPAVGEPAEVTTTVLVRRDHHGAQFSC 159
Query: 61 TATN 64
Sbjct: 160 RTEL 163
>1xau_A B- and T-lymphocyte attenuator; IG domain, beta sandwich,
structural genomics, PSI, protein structure initiative;
1.80A {Mus musculus} SCOP: b.1.1.4
Length = 122
Score = 29.8 bits (66), Expect = 1.2
Identities = 15/71 (21%), Positives = 23/71 (32%), Gaps = 11/71 (15%)
Query: 17 APKPKFVWKK----DGNIIGSGGRRKIF--ENGN-----LLISPVSRDDSGIYSCTATNV 65
+P W K + G + EN + L P+ D+G YSC+
Sbjct: 42 VHRPNVTWCKHNGTIWVPLEVGPQLYTSWEENRSVPVFVLHFKPIHLSDNGSYSCSTNFN 101
Query: 66 HGMDESKGRLI 76
+ S I
Sbjct: 102 SQVINSHSVTI 112
>2hft_A Human tissue factor; coagulation factor; 1.69A {Homo sapiens} SCOP:
b.1.2.1 b.1.2.1 PDB: 1jps_T 1ahw_C 1boy_A 1tfh_A 1wtg_T*
1wss_T* 1wqv_T* 1wun_T* 1wv7_T* 2zp0_T* 2zwl_T* 2zzu_T*
1z6j_T* 2aei_T* 2flb_T* 2b7d_T* 2f9b_T* 1o5d_T* 2flr_T*
1w0y_T* ...
Length = 218
Score = 30.5 bits (68), Expect = 1.3
Identities = 21/133 (15%), Positives = 39/133 (29%), Gaps = 18/133 (13%)
Query: 358 YYTEYEVKVQAI-------NDVGPGPESEVVTIFSAEDMPQVAPQGVFSRGFNSTAINVT 410
Y +V + P E F+ + + S T +NVT
Sbjct: 67 VKQTYLARVFSYPAGNVESTGSAGEPLYENSPEFTPYLETNLGQPTIQSFEQVGTKVNVT 126
Query: 411 ---------WNPIELIRENIRGRLIGHRIKYWKEDNPEETAVYYLSR--TTRNWALIVGL 459
N L ++ G+ + + + YWK + E+ + T ++ +
Sbjct: 127 VEDERTLVRRNNTFLSLRDVFGKDLIYTLYYWKSSSQEKGEFRSGKKTAKTNTNEFLIDV 186
Query: 460 QPDTKYYVKVMAY 472
Y V A
Sbjct: 187 DKGENYCFSVQAV 199
>1qfo_A Protein (sialoadhesin); immunoglobulin superfamily, carbohydrate
binding, immune system; HET: SIA GAL GLC; 1.85A {Mus
musculus} SCOP: b.1.1.1 PDB: 1od7_A* 1oda_A* 1od9_A*
1qfp_A 2bve_A* 1url_A*
Length = 119
Score = 29.4 bits (66), Expect = 1.4
Identities = 17/86 (19%), Positives = 28/86 (32%), Gaps = 26/86 (30%)
Query: 1 YAGEGGNVTIFCN---PEAAPKPKFV---WKKDGN-----IIGSGGRRKIFE-------- 41
G + I C P P + W D + +I SG + + +
Sbjct: 11 QGLSGSCLLIPCIFSYPADVPVSNGITAIWYYDYSGKRQVVIHSGDPKLVDKRFRGRAEL 70
Query: 42 -------NGNLLISPVSRDDSGIYSC 60
NLL+ + +DSG Y+
Sbjct: 71 MGNMDHKVCNLLLKDLKPEDSGTYNF 96
>3mbe_C I-AG7; T cell receptor, histocompatability antigen, MHC class II, I
immune system; HET: NAG; 2.89A {Mus musculus}
Length = 229
Score = 30.4 bits (68), Expect = 1.4
Identities = 20/112 (17%), Positives = 35/112 (31%), Gaps = 25/112 (22%)
Query: 4 EGGNVTIFCNPEAA------------PKPKFVWKKDGNIIGSGGRRKIFENGN----LLI 47
EG + + CN + ++ +G + F + L I
Sbjct: 15 EGADSGLRCNFSTTMKSVQWFQQNHRGRLITLFYLAQGTKENGRLKSTFNSKERYSTLHI 74
Query: 48 SPVSRDDSGIYSCTATNVHGMDE---SKG-RLIVL-----HGPSYYEQLPPK 90
+DSG Y C A + ++ G L V P+ Y+ P+
Sbjct: 75 KDAQLEDSGTYFCAAEDGGSGNKLIFGTGTLLSVKPNIQNPEPAVYQLKDPR 126
>2nms_A CMRF35-like-molecule 1; IG-superfamily, IG-V, NKP44-like, myeloid
IG-like receptor, inhibitory receptor, myelo-monocytic
cells; 2.60A {Homo sapiens}
Length = 124
Score = 29.5 bits (66), Expect = 1.4
Identities = 13/100 (13%), Positives = 32/100 (32%), Gaps = 22/100 (22%)
Query: 4 EGGNVTIFC--NPEAAPKPKF-----VWKKDGNIIGSGGRRKIFENG------------- 43
E G++T+ C K+ +W+ ++ + G + +
Sbjct: 16 ERGSLTVQCVYRSGWETYLKWWCRGAIWRDCKILVKTSGSEQEVKRDRVSIKDNQKNRTF 75
Query: 44 NLLISPVSRDDSGIYSCTATNVHGMDESKG-RLIVLHGPS 82
+ + + + D+ Y C G D ++ + P
Sbjct: 76 TVTMEDLMKTDADTYWC-GIEKTGNDLGVTVQVTIDPAPV 114
Score = 28.0 bits (62), Expect = 4.5
Identities = 7/40 (17%), Positives = 15/40 (37%)
Query: 144 LEITNASFADAGEYECVVKSTVGKISTKTTVIVEGPPGLP 183
+ + + DA Y C ++ T + V ++ P
Sbjct: 77 VTMEDLMKTDADTYWCGIEKTGNDLGVTVQVTIDPAPVTQ 116
>1zxq_A ICAM-2, intercellular adhesion molecule-2; immunoglobulin fold,
cell adhesion, glycoprotein, transmembr; HET: NAG; 2.20A
{Homo sapiens} SCOP: b.1.1.3 b.1.1.4
Length = 192
Score = 30.1 bits (67), Expect = 1.5
Identities = 15/167 (8%), Positives = 41/167 (24%), Gaps = 21/167 (12%)
Query: 88 PPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEIT 147
P K+ + +L++ CS + + N + +
Sbjct: 9 PKKLAVEPKGSLEVNCSTTCNQPEVGGLETSLNKILLDE-------------QAQWKHYL 55
Query: 148 NASFADAGEYECVVKSTVGKISTKTTVIVEGPPGLPGGVQVVEVHKTSATIQWTDGATNG 207
++ + +C + + S + V V PP + +
Sbjct: 56 VSNISHDTVLQCHFTCSGKQESMNSNVSVYQPPRQVILTLQPTLVAVGKSFTIECRVPTV 115
Query: 208 RPITHYKIIARTNWNSTWFNVSEHVIGKEVDRYTGRKEASIENVLVP 254
P+ + F +E + + + + +
Sbjct: 116 EPLDSLTL--------FLFRGNETLHYETFGKAAPAPQEATATFNST 154
Score = 28.6 bits (63), Expect = 5.1
Identities = 13/69 (18%), Positives = 18/69 (26%), Gaps = 8/69 (11%)
Query: 4 EGGNVTIFCN-PEAAPKPK--FVWKKDGNIIGS----GGRRKIFENGNLLISPVSRDDSG 56
G + TI C P P + + E S R+D
Sbjct: 102 VGKSFTIECRVPTVEPLDSLTLFLFRGNETLHYETFGKAAPAPQEATATFNSTADREDGH 161
Query: 57 -IYSCTATN 64
+SC A
Sbjct: 162 RNFSCLAVL 170
>3bia_X T-cell immunoglobulin and mucin domain- containing protein 4;
beta barrel, immunoglobulin fold, IGV domain, TIM,
glycoprotein; HET: TLA; 2.20A {Mus musculus} PDB:
3bi9_X* 3bib_X*
Length = 116
Score = 29.2 bits (65), Expect = 1.7
Identities = 19/81 (23%), Positives = 29/81 (35%), Gaps = 24/81 (29%)
Query: 4 EGGNVTIFCN--PEAAPKPKFVWKKDGN--------IIGSGGRRKIF------------E 41
G VT+ C+ + + W K ++ + G R I +
Sbjct: 10 LGQPVTLPCHYLSWSQSRNSMCWGKGSCPNSKCNAELLRTDGTRIISRKSTKYTLLGKVQ 69
Query: 42 NGN--LLISPVSRDDSGIYSC 60
G L IS +R DSG+Y C
Sbjct: 70 FGEVSLTISNTNRGDSGVYCC 90
Score = 27.2 bits (60), Expect = 6.8
Identities = 7/19 (36%), Positives = 12/19 (63%)
Query: 144 LEITNASFADAGEYECVVK 162
L I+N + D+G Y C ++
Sbjct: 75 LTISNTNRGDSGVYCCRIE 93
>2eys_A NKT15; natural killer T cell receptor, immune system; 2.21A {Homo
sapiens} PDB: 2eyr_A 2eyt_A 3huj_E* 3tyf_A 3tzv_A*
3sdx_E* 2po6_C* 2cde_A 3to4_C*
Length = 210
Score = 30.0 bits (67), Expect = 1.8
Identities = 25/184 (13%), Positives = 51/184 (27%), Gaps = 31/184 (16%)
Query: 4 EGGNVTIFCNPEAAPKPKFVW---------------------KKDGNIIGSGGRRKIFEN 42
EG N T+ CN +P W K +G + +
Sbjct: 17 EGKNCTLQCNYTVSPFSNLRWYKQDTGRGPVSLTIMTFSENTKSNGRY--TATLDADTKQ 74
Query: 43 GNLLISPVSRDDSGIYSCTATNVHGMDESKGRLIVLHGPSYYEQLPPKITIAAHRNLQLR 102
+L I+ DS Y C ++ + G + P I QLR
Sbjct: 75 SSLHITASQLSDSASYICVVSDRGSTLGR-----LYFGRGTQLTVWPDIQNPDPAVYQLR 129
Query: 103 CSAHTEELLDVA---YIWTHNGVRIGNMDLNELETPNINIDGGLLEITNASFADAGEYEC 159
S +++ + + T+ + + + ++++ ++ C
Sbjct: 130 DSKSSDKSVCLFTDFDSQTNVSQSKDSDVYITDKCVLDMRSMDFKSNSAVAWSNKSDFAC 189
Query: 160 VVKS 163
Sbjct: 190 ANAF 193
>2qbw_A PDZ-fibronectin fusion protein; fibronectin PDZ, unknown function;
1.80A {Homo sapiens} PDB: 3ch8_A
Length = 195
Score = 29.9 bits (66), Expect = 1.9
Identities = 23/138 (16%), Positives = 46/138 (33%), Gaps = 8/138 (5%)
Query: 450 TRNWALIVGLQPDTKYYVKVMAYNNAGEGPESERYLER-TYRKAPQKPPSAVHIKGINPT 508
A+ + + ++ G E +E+ P+ + + PT
Sbjct: 59 EHGQAVSLLKTFQNTVELIIVREVGNGAKQEIRVRVEKDGGSGGVSSVPTNLEVVAATPT 118
Query: 509 TVHVTWRYVSPSFEEEPIIGYKVRVWEVDQDMSRANDTIIPVGNTLDADIVDLSPGKRYH 568
++ ++W + Y++ E + T+ +T A I L PG Y
Sbjct: 119 SLLISWDASY-----YGVSYYRITYGETGGNSPVQEFTVPYSSST--ATISGLKPGVDYT 171
Query: 569 MRVLAFSNGGDGRMSSPA 586
+ V A+S+ SP
Sbjct: 172 ITVYAYSDYYGSHHYSPI 189
>2or7_A T-cell immunoglobulin and mucin domain- containing protein 2; beta
barrel, immunoglobulin fold, IGV domain, TIM, immune
system; 1.50A {Mus musculus}
Length = 115
Score = 28.8 bits (64), Expect = 2.3
Identities = 17/98 (17%), Positives = 20/98 (20%), Gaps = 24/98 (24%)
Query: 4 EGGNVTIFC--NPEAAPKPKFVWKKDGNIIGSGGRRKIFENGN----------------- 44
G VT+ C + W R I+ NG
Sbjct: 11 AGHPVTLPCIYSTHLGGIVPMCWGLGECRHSYCIRSLIWTNGYTVTHQRNSRYQLKGNIS 70
Query: 45 -----LLISPVSRDDSGIYSCTATNVHGMDESKGRLIV 77
L I D G Y C L V
Sbjct: 71 EGNVSLTIENTVVGDGGPYCCVVEIPGAFHFVDYMLEV 108
Score = 28.0 bits (62), Expect = 3.8
Identities = 18/106 (16%), Positives = 26/106 (24%), Gaps = 16/106 (15%)
Query: 88 PPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMD----------LNELETPNI 137
+ A + L C T V W R +
Sbjct: 4 HTAVQGLAGHPVTLPCIYSTHLGGIVPMCWGLGECRHSYCIRSLIWTNGYTVTHQRNSRY 63
Query: 138 NIDGGL------LEITNASFADAGEYECVVKSTVGKISTKTTVIVE 177
+ G + L I N D G Y CVV+ + V+
Sbjct: 64 QLKGNISEGNVSLTIENTVVGDGGPYCCVVEIPGAFHFVDYMLEVK 109
>1xiw_B T-cell surface glycoprotein CD3 delta chain; CD3-epsilon,
CD3-delta, UCHT1-SCFV, immunoglobulin fold,
antibody-antigen complex; 1.90A {Homo sapiens} SCOP:
b.1.1.4
Length = 79
Score = 28.0 bits (62), Expect = 2.3
Identities = 11/61 (18%), Positives = 17/61 (27%), Gaps = 12/61 (19%)
Query: 4 EGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTAT 63
V + CN W + ++ +L D GIY C T
Sbjct: 8 LEDRVFVNCNTS------ITWVEGTVGTLLSDITRL----DL--GKRILDPRGIYRCNGT 55
Query: 64 N 64
+
Sbjct: 56 D 56
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 29.1 bits (64), Expect = 2.5
Identities = 7/29 (24%), Positives = 14/29 (48%), Gaps = 2/29 (6%)
Query: 593 EEKEFK--SGSPALYSASTTLLLVMSSTL 619
E++ K S LY+ + L + +T+
Sbjct: 18 EKQALKKLQASLKLYADDSAPALAIKATM 46
>2ptt_B Natural killer cell receptor 2B4; CD244, CD48, NK cell receptor,
X-RAY, immune system; 1.63A {Mus musculus} PDB: 2ptu_A
1z2k_A
Length = 112
Score = 28.6 bits (63), Expect = 2.7
Identities = 13/59 (22%), Positives = 25/59 (42%), Gaps = 2/59 (3%)
Query: 117 WTHNGVRIGNMDLNELETPNINIDGGLLEITNASFADAGEYECVVKSTVGKISTKTTVI 175
W ++G N+ ++ + L I +A D+G Y + +T GK+ K +
Sbjct: 52 WYNDGPSWSNVSFSD--IYGFDYGDFALSIKSAKLQDSGHYLLEITNTGGKVCNKNFQL 108
>2pkd_A SLAM family member 5; signaling lymphocyte activation molecule,
IGV, immunoglobulin variable, IGC, immunoglobulin
constant, signaling protein; 2.04A {Homo sapiens}
Length = 111
Score = 28.0 bits (62), Expect = 3.4
Identities = 9/76 (11%), Positives = 23/76 (30%), Gaps = 15/76 (19%)
Query: 116 IWTHNGVRIGNMDLNELETPNINI-------------DGGLLEITNASFADAGEYECVV- 161
WT + P + + L I++ DAG+Y+ +
Sbjct: 33 AWTSKTSVAYVTPGDSETAPVVTVTHRNYYERIHALGPNYNLVISDLRMEDAGDYKADIN 92
Query: 162 -KSTVGKISTKTTVIV 176
++ + + + +
Sbjct: 93 TQADPYTTTKRYNLQI 108
>3kg5_A B-cell antigen receptor complex-associated protei chain; CD79B,
IG-beta, BCR, immunoglobulin domain, protein binding;
3.20A {Homo sapiens}
Length = 134
Score = 28.1 bits (63), Expect = 4.2
Identities = 17/99 (17%), Positives = 32/99 (32%), Gaps = 30/99 (30%)
Query: 5 GGNVTIFC---------------NPEAAPKPKFVWKKDGNIIGSGGRRKIFENGN---LL 46
G V + C + P+ + + G + S N + L
Sbjct: 33 GFTVKMHCYMNSASGNVSWLWKQEMDENPQQ--LKLEKGRMEESQ-------NESLATLT 83
Query: 47 ISPVSRDDSGIYSCTATNVHGMDESKG---RLIVLHGPS 82
I + +D+GIY C + + +G L V+ +
Sbjct: 84 IQGIRFEDNGIYFCQQKCNNTSEVYQGCGTELRVMGFST 122
>3vld_A DNA mismatch repair protein HSM3; heat repeat, RPT1, chaperone;
HET: DNA; 2.05A {Saccharomyces cerevisiae} PDB: 3vle_A*
3vlf_A* 4a3v_A* 4a3t_A*
Length = 500
Score = 29.4 bits (65), Expect = 4.3
Identities = 12/87 (13%), Positives = 27/87 (31%), Gaps = 12/87 (13%)
Query: 502 IKGINPTTVHVTWRYVSPSF----------EEEPIIG--YKVRVWEVDQDMSRANDTIIP 549
+ I + R+V E P + + ++ ++SR +
Sbjct: 265 LLEIRNQDKYWALRHVKKILPVFAQLFEDTENYPDVRAFSTNCLLQLFAEVSRIEEDEYS 324
Query: 550 VGNTLDADIVDLSPGKRYHMRVLAFSN 576
+ T+D D + + + L N
Sbjct: 325 LFKTMDKDSLKIGSEAKLITEWLELIN 351
>1h5b_A Murine T cell receptor (TCR) valpha domain; immune response,
immunoglobulin fold; 1.85A {Mus musculus} SCOP: b.1.1.1
PDB: 1h5b_C 1h5b_B
Length = 113
Score = 27.6 bits (62), Expect = 4.4
Identities = 18/96 (18%), Positives = 30/96 (31%), Gaps = 21/96 (21%)
Query: 4 EGGNVTIFCNPEAAP------------KPKFVWKKDGNIIGSGGRRKIFENGN-----LL 46
EG + + CN ++ +G + F++ L
Sbjct: 15 EGTDSALRCNFTTTMRSVQWFRQNSRGSLISLFYLASGTKENGRLKSAFDSERARYSTLH 74
Query: 47 ISPVSRDDSGIYSCTATNVHGMDE---SKG-RLIVL 78
I +DSG Y C A G + G +L V+
Sbjct: 75 IRDAQLEDSGTYFCAAEASSGSWQLIFGSGTQLTVM 110
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide-
binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Length = 207
Score = 28.6 bits (65), Expect = 4.7
Identities = 11/15 (73%), Positives = 11/15 (73%)
Query: 68 MDESKGRLIVLHGPS 82
MD KG LIVL GPS
Sbjct: 1 MDNEKGLLIVLSGPS 15
>3to4_D NKT vbeta2 (mouse variable domain, human constant; mouse CD1D,
mouse NKT, immune system; HET: AGH NAG; 3.10A {Homo
sapiens}
Length = 253
Score = 28.7 bits (64), Expect = 5.2
Identities = 15/115 (13%), Positives = 31/115 (26%), Gaps = 28/115 (24%)
Query: 5 GGNVTIFCN---------------PEAAPKPKFVWKKDGNIIGSG--GRRKIFENGN--- 44
G V + C + + F + G+ G +
Sbjct: 16 GQAVNLRCILKNSQYPWMSWYQQDLQKQLQWLFTLRSPGDKEVKSLPGADYLATRVTDTE 75
Query: 45 LLISPVSRDDSGIYSCTATNVHGMDESKG------RLIVLHGPSYYEQLPPKITI 93
L + + CT++ H + + +L VL PP++ +
Sbjct: 76 LRLQVANMSQGRTLYCTSSADHWTNTGQLYFGEGSKLTVLEDLK--NVFPPEVAV 128
>1ypz_E T cell receptor delta, beta-2-microglobulin; H2-T22 protein, T cell
receptor delta, immune system; HET: NAG MAN FUC; 3.40A
{Mus musculus} SCOP: b.1.1.1 b.1.1.2
Length = 207
Score = 28.4 bits (63), Expect = 5.7
Identities = 26/197 (13%), Positives = 53/197 (26%), Gaps = 35/197 (17%)
Query: 4 EGGNVTIFCN--------------PEAAPKPKFVWKKDGNIIGSGGRRKIFENGN----- 44
EG + + CN + ++ +G + F++
Sbjct: 15 EGTDSALRCNFTTTMRSVQWFRQNSRGSLI--SLFYLASGTKENGRLKSAFDSKERRYST 72
Query: 45 LLISPVSRDDSGIYSCTATNVHGMDESKG--RLIVLHGPSYYEQLPPKITIAAHRNLQLR 102
L I +DSG Y C A H + + +V + P A ++
Sbjct: 73 LHIRDAQLEDSGTYFCAADTWHISEGYELGTDKLVFGQGTQVTVEPKSQPPAKPSVFIMK 132
Query: 103 CSAHTEELL------DVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEITNASFADAGE 156
+ L+ +V + + I+ G + + D+
Sbjct: 133 NGTNVACLVKDFYPKEVTISLRSSKKIV-----EFDPAIVISPSGKYSAVKLGQYGDSNS 187
Query: 157 YECVVKSTVGKISTKTT 173
C V+ + T
Sbjct: 188 VTCSVQHN-SETVHSTD 203
>3c6l_A TCR 2W20 alpha chain; TCR-PMHC complex; 3.40A {Mus musculus} SCOP:
b.1.1.1 b.1.1.2
Length = 185
Score = 27.9 bits (62), Expect = 7.0
Identities = 23/111 (20%), Positives = 34/111 (30%), Gaps = 24/111 (21%)
Query: 4 EGGNVTIFCNPEAAPKPKFVW--------------KKDGNIIGSGGRRKIFENGN----- 44
EG + C+ E + F W + + GR IF N
Sbjct: 14 EGETAILNCSYEDSTFDYFPWYHQFPGESPALLIAIRPVSNKKEDGRFTIFFNKREKKFS 73
Query: 45 LLISPVSRDDSGIYSCTATNVH-----GMDESKGRLIVLHGPSYYEQLPPK 90
L I+ DS Y C A++ G I P+ Y+ P+
Sbjct: 74 LHIADSQPGDSATYFCAASDNRIFFGDGTQLVVKPNIQNPEPAVYQLKDPR 124
>1i1c_A IGG2A, IG gamma-2A chain C region; FC, immune system; HET: NAG FUL
BMA MAN FUC; 2.70A {Rattus norvegicus} SCOP: b.1.1.2
b.1.1.2 PDB: 1i1a_D*
Length = 239
Score = 28.4 bits (63), Expect = 7.2
Identities = 25/186 (13%), Positives = 50/186 (26%), Gaps = 37/186 (19%)
Query: 3 GEGGNVTIFCN----PEAAPKPKFVWKKDGNIIGSG--GRRKIFENGN------LLISPV 50
G G + C + P+ +F W D + + + N L I
Sbjct: 30 GGGLTPKVTCVVVDISQNDPEVRFSWFIDDVEVHTAQTHAPEKQSNSTLRSVSELPIVER 89
Query: 51 SRDDSGIYSCTATNVHGMDESKGRLIVLHGPSYYEQ----LPPKITIAAHRNLQLRCSAH 106
+ + C + + I + + P + + C
Sbjct: 90 DWLNGKTFKCKVNS-GAFPAPIEKSISKPEGTPRGPQVYTMAPPKEEMTQSQVSITC--- 145
Query: 107 TEELL------DVAYIWTHNGVRIGNMDLNELETPNINIDG-----GLLEITNASFADAG 155
++ D+ W NG N + P ++ DG L + ++
Sbjct: 146 ---MVKGFYPPDIYTEWKMNGQPQENY---KNTPPTMDTDGSYFLYSKLNVKKETWQQGN 199
Query: 156 EYECVV 161
+ C V
Sbjct: 200 TFTCSV 205
>1xed_A Polymeric-immunoglobulin receptor; IG-like fold, immune system;
1.90A {Homo sapiens} SCOP: b.1.1.1
Length = 117
Score = 27.2 bits (60), Expect = 7.5
Identities = 20/99 (20%), Positives = 28/99 (28%), Gaps = 22/99 (22%)
Query: 4 EGGNVTIFCNPEAAPKPKFV---------WKKDGNIIGSGGRRKIFENG----------- 43
EG +V+I C + +I S G G
Sbjct: 14 EGNSVSITCYYPPTSVNRHTRKYWCRQGARGGCITLISSEGYVSSKYAGRANLTNFPENG 73
Query: 44 --NLLISPVSRDDSGIYSCTATNVHGMDESKGRLIVLHG 80
+ I+ +S+DDSG Y C L VL
Sbjct: 74 TFVVNIAQLSQDDSGRYKCGLGINSRGLSFDVSLEVLEH 112
Score = 26.8 bits (59), Expect = 9.9
Identities = 8/42 (19%), Positives = 16/42 (38%), Gaps = 2/42 (4%)
Query: 143 LLEITNASFADAGEYECVVKSTVGKISTKTTVIVEGPPGLPG 184
++ I S D+G Y+C + +S ++ V
Sbjct: 76 VVNIAQLSQDDSGRYKCGLGINSRGLSFDVSLEVL--EHHHH 115
>1iga_A IGA1; immunoglobulin; NMR {Homo sapiens} PDB: 2esg_A 2qtj_A 3chn_A
1r70_B 3cm9_A
Length = 475
Score = 28.4 bits (63), Expect = 7.5
Identities = 27/189 (14%), Positives = 47/189 (24%), Gaps = 21/189 (11%)
Query: 18 PKPKFVWKKDGNIIGSGGRRKIFENGN------LLISPVSRDDSGIYSCTATNVHG---M 68
F W G + G L + ++CTA +
Sbjct: 278 SGVTFTWTPSSGKSAVQGPPERDLCGCYSVSSVLPGCAEPWNHGKTFTCTAAYPESKTPL 337
Query: 69 DESKGRLIVLHGPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMD 128
+ + P + PP +A + + L C A DV W +
Sbjct: 338 TATLSKSGNTFRPEVHLLPPPSEELALNELVTLTCLARGFSPKDVLVRWLQGSQEL--PR 395
Query: 129 LNELETPNINIDG---------GLLEITNASFADAGEYECVVKSTVGKISTKTTVIVEGP 179
L + +L + + + C+V T ++
Sbjct: 396 EKYLTWASRQEPSQGTTTFAVTSILRVAAEDWKKGDTFSCMVGHE-ALPLAFTQKTIDRL 454
Query: 180 PGLPGGVQV 188
G P V V
Sbjct: 455 AGKPTHVNV 463
>1zox_A CLM-1; IG-superfamily, IG-V, NKP44-like, myeloid IG-like receptor,
structural genomics, PSI, protein structure initiative;
2.10A {Mus musculus}
Length = 113
Score = 27.0 bits (60), Expect = 7.7
Identities = 9/37 (24%), Positives = 15/37 (40%)
Query: 144 LEITNASFADAGEYECVVKSTVGKISTKTTVIVEGPP 180
+ + + +DAG Y C + K TV + P
Sbjct: 76 VTMEDLRMSDAGIYWCGITKGGLDPMFKVTVNIGPVP 112
>1hkf_A NKP44, NK cell activating receptor; natural cytotoxicity receptor,
immunoglobulin domain; 2.2A {Homo sapiens} SCOP: b.1.1.1
Length = 122
Score = 27.3 bits (60), Expect = 7.9
Identities = 14/78 (17%), Positives = 26/78 (33%), Gaps = 21/78 (26%)
Query: 4 EGGNVTIFC--NPEAAPKPKFVWKKDG------NIIGSGGRRKIFENG------------ 43
G +T+ C P + K W K+ ++ S R +
Sbjct: 24 AGQTLTVRCQYPPTGSLYEKKGWCKEASALVCIRLVTSSKPRTMAWTSRFTIWDDPDAGF 83
Query: 44 -NLLISPVSRDDSGIYSC 60
+ ++ + +DSG Y C
Sbjct: 84 FTVTMTDLREEDSGHYWC 101
>1nko_A Sialic acid binding IG-like lectin 7; immunoglobulin, siglec7,
immune system; 1.45A {Homo sapiens} SCOP: b.1.1.1 PDB:
2g5r_A* 1o7v_A* 2df3_A* 1o7s_A* 2hrl_A*
Length = 132
Score = 27.2 bits (60), Expect = 9.2
Identities = 16/93 (17%), Positives = 23/93 (24%), Gaps = 29/93 (31%)
Query: 1 YAGEGGNVTIFCN---PEAAPKP----KFVWKKDGNIIGSG-----------------GR 36
EG V + C+ P + W + GN I R
Sbjct: 17 TVQEGMCVHVRCSFSYPVDSDTDSDPVHGYWFRAGNDISWKAPVATNNPAWAVQEETRDR 76
Query: 37 RKIF-----ENGNLLISPVSRDDSGIYSCTATN 64
+ +N L I D+G Y
Sbjct: 77 FHLLGDPQTKNCTLSIRDARMSDAGRYFFRMEK 109
>2h6o_A Major outer envelope glycoprotein GP350; viral protein; HET: NAG
MAN BMA NDG GAL FUC; 3.50A {Human herpesvirus 4}
Length = 470
Score = 28.0 bits (61), Expect = 10.0
Identities = 21/117 (17%), Positives = 37/117 (31%), Gaps = 9/117 (7%)
Query: 218 RTNWNSTWFNVSEHVIGKEVDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPS 277
T T + S + + V R+ G ++L + + +G + S
Sbjct: 252 ATPIPGTGYAYSLRLTPRPVSRFLGN-----NSILYVFYSGNGPKASGGDYCIQSNIVFS 306
Query: 278 PQYNTPADKPYQAPSRIGGGGGKIGDLSISWEPLPREKQNAPNIYYKIFWRKKNDTE 334
+ D P G + + E N+PN+ FW N+TE
Sbjct: 307 DEIPASQDMPTNTTDITYVGDNATYSVPMV----TSEDANSPNVTVTAFWAWPNNTE 359
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.315 0.134 0.407
Gapped
Lambda K H
0.267 0.0526 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 9,990,792
Number of extensions: 631684
Number of successful extensions: 3407
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2099
Number of HSP's successfully gapped: 1012
Length of query: 626
Length of database: 6,701,793
Length adjustment: 99
Effective length of query: 527
Effective length of database: 3,937,614
Effective search space: 2075122578
Effective search space used: 2075122578
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 60 (27.4 bits)