RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy12064
         (148 letters)



>d1wfja_ b.7.1.2 (A:) C2 domain protein At1g63220 {Thale cress
           (Arabidopsis thaliana) [TaxId: 3702]}
          Length = 136

 Score = 28.9 bits (64), Expect = 0.13
 Identities = 17/115 (14%), Positives = 35/115 (30%), Gaps = 6/115 (5%)

Query: 28  GNGLKKTYLDKSPELASLRYALSLYTQTTDALIKTFVQSQCNEGRDLIGNEEQLEFFELH 87
             GL+      + +   ++       Q ++         + NE      +E   E     
Sbjct: 19  AKGLEDADFLNNMD-PYVQLTCRTQDQKSNVAEGMGTTPEWNETFIFTVSEGTTEL---K 74

Query: 88  ICVKDYCFARDDRLVGVAVLQLKDIVEQVKHQICVKDYCFARDDRLVGVAVLQLK 142
             + D     +D  VG A + L+ +  +         Y   +D+   G   + L 
Sbjct: 75  AKIFDKDVGTEDDAVGEATIPLEPVFVEGSIPP--TAYNVVKDEEYKGEIWVALS 127



 Score = 26.2 bits (57), Expect = 1.2
 Identities = 6/30 (20%), Positives = 13/30 (43%)

Query: 119 QICVKDYCFARDDRLVGVAVLQLKDIVEQK 148
           +  + D     +D  VG A + L+ +  + 
Sbjct: 74  KAKIFDKDVGTEDDAVGEATIPLEPVFVEG 103


>d2nq3a1 b.7.1.1 (A:13-145) E3 ubiquitin-protein ligase Itchy {Human
           (Homo sapiens) [TaxId: 9606]}
          Length = 133

 Score = 25.1 bits (54), Expect = 3.0
 Identities = 7/36 (19%), Positives = 15/36 (41%)

Query: 112 IVEQVKHQICVKDYCFARDDRLVGVAVLQLKDIVEQ 147
           +    K    V  +   + D L+G A L + + ++ 
Sbjct: 61  VTPVSKLHFRVWSHQTLKSDVLLGTAALDIYETLKS 96



 Score = 25.1 bits (54), Expect = 3.2
 Identities = 8/43 (18%), Positives = 18/43 (41%)

Query: 83  FFELHICVKDYCFARDDRLVGVAVLQLKDIVEQVKHQICVKDY 125
             +LH  V  +   + D L+G A L + + ++    ++     
Sbjct: 64  VSKLHFRVWSHQTLKSDVLLGTAALDIYETLKSNNMKLEEVVV 106


>d2gdma_ a.1.1.2 (A:) Leghemoglobin {Yellow lupin (Lupinus luteus)
          [TaxId: 3873]}
          Length = 153

 Score = 24.3 bits (52), Expect = 5.7
 Identities = 7/39 (17%), Positives = 15/39 (38%)

Query: 4  SLSPKQCALLDASLDSIKNYFHAAGNGLKKTYLDKSPEL 42
          +L+  Q AL+ +S +          +      L+ +P  
Sbjct: 2  ALTESQAALVKSSWEEFNANIPKHTHRFFILVLEIAPAA 40


>d1fsla_ a.1.1.2 (A:) Leghemoglobin {Soybean (Glycine max),
          isoform A [TaxId: 3847]}
          Length = 143

 Score = 23.9 bits (51), Expect = 8.0
 Identities = 10/42 (23%), Positives = 19/42 (45%)

Query: 4  SLSPKQCALLDASLDSIKNYFHAAGNGLKKTYLDKSPELASL 45
          + + KQ AL+ +S ++ K            + L+K+P    L
Sbjct: 2  AFTEKQDALVSSSFEAFKANIPQYSVVFYTSILEKAPAAKDL 43


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.322    0.137    0.395 

Gapped
Lambda     K      H
   0.267   0.0506    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 517,213
Number of extensions: 21619
Number of successful extensions: 55
Number of sequences better than 10.0: 1
Number of HSP's gapped: 55
Number of HSP's successfully gapped: 9
Length of query: 148
Length of database: 2,407,596
Length adjustment: 77
Effective length of query: 71
Effective length of database: 1,350,386
Effective search space: 95877406
Effective search space used: 95877406
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 49 (23.2 bits)