BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy12066
         (164 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2HZD|A Chain A, Nmr Structure Of The Dna-Binding Tea Domain And Insights
           Into Tef-1 Function
          Length = 82

 Score = 81.3 bits (199), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 40/72 (55%), Positives = 50/72 (69%), Gaps = 4/72 (5%)

Query: 59  EGVWSPDIEQSFQEALAIYPPCGRRKIILSDEGKMY---ETVGTFGRKKN-PTKGGKGAV 114
           EGVWSPDIEQSFQEAL+IYPPCGRRKIILSDEGKMY   E +  + + +   T+  K   
Sbjct: 6   EGVWSPDIEQSFQEALSIYPPCGRRKIILSDEGKMYGRNELIARYIKLRTGKTRTRKQVS 65

Query: 115 GGIDLMGFLKAQ 126
             I ++   K++
Sbjct: 66  SHIQVLARRKSR 77


>pdb|1Y82|A Chain A, Conserved Hypothetical Protein Pfu-367848-001 From
           Pyrococcus Furiosus
 pdb|1Y82|B Chain B, Conserved Hypothetical Protein Pfu-367848-001 From
           Pyrococcus Furiosus
 pdb|1Y82|C Chain C, Conserved Hypothetical Protein Pfu-367848-001 From
           Pyrococcus Furiosus
 pdb|1Y82|D Chain D, Conserved Hypothetical Protein Pfu-367848-001 From
           Pyrococcus Furiosus
          Length = 157

 Score = 28.1 bits (61), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 15/43 (34%), Positives = 21/43 (48%), Gaps = 4/43 (9%)

Query: 64  PDIEQSFQEALAIYPPCGRRKIILSDEGKMYETVGTFGRKKNP 106
           PDIE     A AIY     + ++++D+ K YE    FG    P
Sbjct: 102 PDIEDVLTAATAIYT----KSLLITDDSKRYEPXRRFGLDTXP 140


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.315    0.140    0.447 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,505,161
Number of Sequences: 62578
Number of extensions: 216812
Number of successful extensions: 275
Number of sequences better than 100.0: 4
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 273
Number of HSP's gapped (non-prelim): 4
length of query: 164
length of database: 14,973,337
effective HSP length: 91
effective length of query: 73
effective length of database: 9,278,739
effective search space: 677347947
effective search space used: 677347947
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 47 (22.7 bits)