Query psy12066
Match_columns 164
No_of_seqs 78 out of 80
Neff 2.1
Searched_HMMs 29240
Date Fri Aug 16 17:48:32 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy12066.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/12066hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2hzd_A Transcriptional enhance 100.0 2.8E-33 9.7E-38 202.8 2.2 71 55-126 2-74 (82)
2 4eef_G F-HB80.4, designed hema 88.9 0.23 8E-06 35.3 2.4 38 56-105 17-54 (74)
3 1wgx_A KIAA1903 protein; MYB D 86.8 0.63 2.2E-05 32.4 3.6 24 57-80 6-29 (73)
4 2cqr_A RSGI RUH-043, DNAJ homo 76.1 5.1 0.00017 27.3 4.9 37 57-105 16-52 (73)
5 2cqq_A RSGI RUH-037, DNAJ homo 75.6 3.1 0.00011 28.2 3.7 35 58-104 7-41 (72)
6 3bee_A Putative YFRE protein; 68.2 3.8 0.00013 27.2 2.8 31 57-87 19-49 (93)
7 2yqk_A Arginine-glutamic acid 67.9 4.9 0.00017 26.2 3.2 23 58-80 8-30 (63)
8 2cjj_A Radialis; plant develop 67.6 4.9 0.00017 28.6 3.4 36 58-105 7-42 (93)
9 2crg_A Metastasis associated p 64.3 7.8 0.00027 25.8 3.7 25 56-80 5-29 (70)
10 2eqr_A N-COR1, N-COR, nuclear 62.2 12 0.00042 23.9 4.3 25 55-79 8-32 (61)
11 3vxv_A Methyl-CPG-binding doma 60.7 6.7 0.00023 26.7 2.9 45 78-126 6-51 (69)
12 1irz_A ARR10-B; helix-turn-hel 60.6 5 0.00017 27.3 2.3 22 56-77 4-25 (64)
13 4a69_C Nuclear receptor corepr 48.6 15 0.0005 25.8 3.1 24 57-80 41-64 (94)
14 3l3u_A POL polyprotein; DNA in 44.2 22 0.00075 24.2 3.4 35 64-103 46-80 (163)
15 3gt2_A Putative uncharacterize 32.8 21 0.00072 25.9 1.9 26 138-163 84-114 (142)
16 1c6v_A Protein (SIV integrase) 32.6 36 0.0012 22.5 2.9 29 63-95 45-73 (164)
17 1cxq_A Avian sarcoma virus int 32.6 27 0.00092 23.9 2.4 29 64-95 52-80 (162)
18 2k1g_A Lipoprotein SPR; soluti 30.8 26 0.0009 25.8 2.2 26 138-163 62-93 (135)
19 4e4j_A Arginine deiminase; L-a 30.7 28 0.00096 29.4 2.6 36 127-162 220-255 (433)
20 3ne0_A Resuscitation promoting 30.2 23 0.00079 28.3 1.9 26 138-163 153-183 (214)
21 3kks_A Integrase, IN; beta-str 29.8 27 0.00092 22.9 1.9 37 63-104 38-74 (152)
22 2i3e_A G-rich; rich protein, C 27.7 25 0.00086 29.4 1.8 33 116-164 168-202 (222)
23 4b4y_A Neuroglobin; transport 25.8 42 0.0014 23.8 2.5 18 60-77 131-148 (154)
24 2jyx_A Lipoprotein SPR; soluti 23.4 41 0.0014 24.1 2.0 26 138-163 62-93 (136)
25 1tu9_A Hypothetical protein PA 23.3 43 0.0015 23.0 2.1 18 60-77 107-124 (134)
26 1bin_A Leghemoglobin A; heme, 23.3 44 0.0015 22.7 2.1 17 61-77 120-136 (143)
27 3ubc_A Hemoglobin-like flavopr 23.1 43 0.0015 22.8 2.0 17 61-77 109-125 (131)
28 1ssz_A Pulmonary surfactant-as 23.0 27 0.00092 21.7 0.8 12 72-83 10-21 (34)
29 3pbi_A Invasion protein; pepti 22.1 47 0.0016 26.4 2.3 25 139-163 154-183 (214)
30 2ci1_A NG, NG-dimethylarginine 21.7 37 0.0013 26.4 1.6 41 117-162 96-136 (275)
31 1ub1_A MECP2, attachment regio 21.7 43 0.0015 25.7 2.0 44 79-126 39-83 (133)
32 2r80_A Hemoglobin subunit alph 21.5 48 0.0017 23.3 2.1 18 60-77 115-132 (141)
33 1cg5_B Protein (hemoglobin); o 20.8 51 0.0017 23.6 2.1 17 61-77 116-132 (141)
34 2hbw_A NLP/P60 protein; NLP/P6 20.6 52 0.0018 26.2 2.3 25 139-163 156-186 (235)
No 1
>2hzd_A Transcriptional enhancer factor TEF-1; DNA-binding, helix-turn-helix, gene regulation; NMR {Homo sapiens}
Probab=99.97 E-value=2.8e-33 Score=202.83 Aligned_cols=71 Identities=58% Similarity=0.878 Sum_probs=66.3
Q ss_pred cCCCCCCCChhHHHHHHHHHHhcCCCCcceeeeCCCCcccccchhhhhccccccCCCccccc--chhhhHHHhh
Q psy12066 55 AADAEGVWSPDIEQSFQEALAIYPPCGRRKIILSDEGKMYETVGTFGRKKNPTKGGKGAVGG--IDLMGFLKAQ 126 (164)
Q Consensus 55 ~~d~e~VWs~DIEqAF~EALaIyPp~GRrKIiLSdeGK~yGRNELIa~YI~~~tgGK~R~~~--~~l~~~lK~~ 126 (164)
++|.++|||||||+||+|||+||||||||||+||++||+||||||||+||+.+ +||.|+++ ++|+|+||+.
T Consensus 2 d~~~e~vW~~~lE~aF~eaL~~yp~~g~~k~~ls~~gk~~gRNelIs~yI~~~-tGk~RtrKQVSShiQvlk~~ 74 (82)
T 2hzd_A 2 DNDAEGVWSPDIEQSFQEALSIYPPCGRRKIILSDEGKMYGRNELIARYIKLR-TGKTRTRKQVSSHIQVLARR 74 (82)
T ss_dssp CGGGSCCSCHHHHHHHHHHHHHSCSSSCCCCCHHHHCCCCCTHHHHHHHHHHH-HSCCCCSHHHHHHHHHHHHH
T ss_pred CCCcCCcCCHHHHHHHHHHHHHcCCCCccceeecccccccchhHHHHHHHHHH-HcccCCccchhHHHHHHHHH
Confidence 56889999999999999999999999999999999999999999999999965 58999988 7899999965
No 2
>4eef_G F-HB80.4, designed hemagglutinin binding protein; immunoglobulin, fusion of virus membrane with membrane, membrane fusion, sialic acid, virion; HET: NAG BMA; 2.70A {Artificial gene}
Probab=88.87 E-value=0.23 Score=35.34 Aligned_cols=38 Identities=13% Similarity=0.113 Sum_probs=27.5
Q ss_pred CCCCCCCChhHHHHHHHHHHhcCCCCcceeeeCCCCcccccchhhhhccc
Q psy12066 56 ADAEGVWSPDIEQSFQEALAIYPPCGRRKIILSDEGKMYETVGTFGRKKN 105 (164)
Q Consensus 56 ~d~e~VWs~DIEqAF~EALaIyPp~GRrKIiLSdeGK~yGRNELIa~YI~ 105 (164)
......|+.+=..+|++||++||+.- ++ |=+.||.+|-
T Consensus 17 ~~ss~~WT~eE~K~FE~ALa~yp~~t------pd------RWekIA~~Vp 54 (74)
T 4eef_G 17 RGSGRPWKFSENIAFEIALSFTNKDT------PD------RWKKVAQYVK 54 (74)
T ss_dssp -----CCCTTHHHHHHHHTSSSCSSC------CS------SSTTTGGGSC
T ss_pred CCCCCCCCHHHHHHHHHHHHHCCCCC------Cc------HHHHHHHHcC
Confidence 34467899999999999999999764 22 5678888875
No 3
>1wgx_A KIAA1903 protein; MYB DNA-binding domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=86.81 E-value=0.63 Score=32.40 Aligned_cols=24 Identities=21% Similarity=0.335 Sum_probs=20.6
Q ss_pred CCCCCCChhHHHHHHHHHHhcCCC
Q psy12066 57 DAEGVWSPDIEQSFQEALAIYPPC 80 (164)
Q Consensus 57 d~e~VWs~DIEqAF~EALaIyPp~ 80 (164)
..+..|+.+=+.+|++||++||+.
T Consensus 6 ~~~~~WT~eE~k~fe~ALa~~~~~ 29 (73)
T 1wgx_A 6 SGDKEWNEKELQKLHCAFASLPKH 29 (73)
T ss_dssp CSSSCCCHHHHHHHHHHHHHSCSS
T ss_pred CCCCCCCHHHHHHHHHHHHHCCCC
Confidence 344679999999999999999975
No 4
>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=76.07 E-value=5.1 Score=27.30 Aligned_cols=37 Identities=22% Similarity=0.329 Sum_probs=27.8
Q ss_pred CCCCCCChhHHHHHHHHHHhcCCCCcceeeeCCCCcccccchhhhhccc
Q psy12066 57 DAEGVWSPDIEQSFQEALAIYPPCGRRKIILSDEGKMYETVGTFGRKKN 105 (164)
Q Consensus 57 d~e~VWs~DIEqAF~EALaIyPp~GRrKIiLSdeGK~yGRNELIa~YI~ 105 (164)
-..+.|+++=+..|.+||+.||+..-. |=+.||.+|-
T Consensus 16 ~~~~~WT~eEd~~L~~al~~~g~~~~~------------rW~~IA~~vp 52 (73)
T 2cqr_A 16 SAEEPWTQNQQKLLELALQQYPRGSSD------------CWDKIARCVP 52 (73)
T ss_dssp CSSCCCCHHHHHHHHHHHHHSCSSSHH------------HHHHHGGGCS
T ss_pred cCCCCCCHHHHHHHHHHHHHcCCCCCc------------hHHHHHHHcC
Confidence 355679999999999999999964222 3356888774
No 5
>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=75.63 E-value=3.1 Score=28.25 Aligned_cols=35 Identities=6% Similarity=0.164 Sum_probs=28.1
Q ss_pred CCCCCChhHHHHHHHHHHhcCCCCcceeeeCCCCcccccchhhhhcc
Q psy12066 58 AEGVWSPDIEQSFQEALAIYPPCGRRKIILSDEGKMYETVGTFGRKK 104 (164)
Q Consensus 58 ~e~VWs~DIEqAF~EALaIyPp~GRrKIiLSdeGK~yGRNELIa~YI 104 (164)
....|+.+=.+.|++||++||+--- .|=+.||.|+
T Consensus 7 ~~~~WT~eE~k~fe~al~~~p~~t~------------~RW~~IA~~l 41 (72)
T 2cqq_A 7 GAPEWTEEDLSQLTRSMVKFPGGTP------------GRWEKIAHEL 41 (72)
T ss_dssp CCCCCCHHHHHHHHHHHHHSCTTCT------------THHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHCCCCCC------------cHHHHHHHHh
Confidence 3567999999999999999996421 2568899996
No 6
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=68.17 E-value=3.8 Score=27.17 Aligned_cols=31 Identities=10% Similarity=0.128 Sum_probs=27.3
Q ss_pred CCCCCCChhHHHHHHHHHHhcCCCCcceeee
Q psy12066 57 DAEGVWSPDIEQSFQEALAIYPPCGRRKIIL 87 (164)
Q Consensus 57 d~e~VWs~DIEqAF~EALaIyPp~GRrKIiL 87 (164)
.+++..+++..+.|++||++-|.|-|--+.|
T Consensus 19 ~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~l 49 (93)
T 3bee_A 19 LHKQAMTDEVSLLLEQALQLEPYNEAALSLI 49 (93)
T ss_dssp TTTTCCCHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred hcCCCCCHHHHHHHHHHHHHCcCCHHHHHHH
Confidence 3456789999999999999999999988866
No 7
>2yqk_A Arginine-glutamic acid dipeptide repeats protein; structure genomics, SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=67.92 E-value=4.9 Score=26.19 Aligned_cols=23 Identities=26% Similarity=0.447 Sum_probs=20.6
Q ss_pred CCCCCChhHHHHHHHHHHhcCCC
Q psy12066 58 AEGVWSPDIEQSFQEALAIYPPC 80 (164)
Q Consensus 58 ~e~VWs~DIEqAF~EALaIyPp~ 80 (164)
.+..|+++=...|++||+.|++.
T Consensus 8 ~~~~WT~eE~~~Fe~~l~~yGKd 30 (63)
T 2yqk_A 8 IEKCWTEDEVKRFVKGLRQYGKN 30 (63)
T ss_dssp CCCSCCHHHHHHHHHHHHHTCSC
T ss_pred CCCCcCHHHHHHHHHHHHHhCcc
Confidence 45789999999999999999986
No 8
>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3
Probab=67.59 E-value=4.9 Score=28.59 Aligned_cols=36 Identities=22% Similarity=0.370 Sum_probs=27.4
Q ss_pred CCCCCChhHHHHHHHHHHhcCCCCcceeeeCCCCcccccchhhhhccc
Q psy12066 58 AEGVWSPDIEQSFQEALAIYPPCGRRKIILSDEGKMYETVGTFGRKKN 105 (164)
Q Consensus 58 ~e~VWs~DIEqAF~EALaIyPp~GRrKIiLSdeGK~yGRNELIa~YI~ 105 (164)
..+.|+++=+..|.+||+.||+..-. |=+.||.++-
T Consensus 7 ~~~~WT~eEd~~L~~al~~~~~~~~~------------rW~~IA~~vp 42 (93)
T 2cjj_A 7 SGRPWSAKENKAFERALAVYDKDTPD------------RWANVARAVE 42 (93)
T ss_dssp -CCSCCHHHHHHHHHHHHHSCTTCTT------------HHHHHHHHST
T ss_pred CCCCCCHHHHHHHHHHHHHcCCCCCc------------hHHHHHHHcC
Confidence 35679999999999999999865322 3467888874
No 9
>2crg_A Metastasis associated protein MTA3; transcription factor, helix turn helix, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.3
Probab=64.34 E-value=7.8 Score=25.82 Aligned_cols=25 Identities=28% Similarity=0.353 Sum_probs=21.7
Q ss_pred CCCCCCCChhHHHHHHHHHHhcCCC
Q psy12066 56 ADAEGVWSPDIEQSFQEALAIYPPC 80 (164)
Q Consensus 56 ~d~e~VWs~DIEqAF~EALaIyPp~ 80 (164)
.+.-+.|+++=...|++||+.|++.
T Consensus 5 r~~~~~WT~eE~~~Fe~~l~~yGKd 29 (70)
T 2crg_A 5 SSGMEEWSASEACLFEEALEKYGKD 29 (70)
T ss_dssp CCSSCCCCHHHHHHHHHHHHHTCSC
T ss_pred ccCCCCCCHHHHHHHHHHHHHhCcc
Confidence 3566789999999999999999885
No 10
>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=62.16 E-value=12 Score=23.86 Aligned_cols=25 Identities=16% Similarity=0.377 Sum_probs=21.1
Q ss_pred cCCCCCCCChhHHHHHHHHHHhcCC
Q psy12066 55 AADAEGVWSPDIEQSFQEALAIYPP 79 (164)
Q Consensus 55 ~~d~e~VWs~DIEqAF~EALaIyPp 79 (164)
..+.-+.|+++=...|.+||+.||+
T Consensus 8 ~r~~~~~WT~eE~~~F~~~~~~~gk 32 (61)
T 2eqr_A 8 DRQFMNVWTDHEKEIFKDKFIQHPK 32 (61)
T ss_dssp CCSCCCSCCHHHHHHHHHHHHHSTT
T ss_pred ccccCCCCCHHHHHHHHHHHHHhCC
Confidence 3455678999999999999999974
No 11
>3vxv_A Methyl-CPG-binding domain protein 4; methyl CPG binding domain, protein-DNA complex, versatIle BA recognition, hydrolase-DNA complex; HET: DNA 5CM; 2.00A {Mus musculus} PDB: 3vxx_A* 3vyb_A* 3vyq_A*
Probab=60.70 E-value=6.7 Score=26.68 Aligned_cols=45 Identities=20% Similarity=0.212 Sum_probs=32.9
Q ss_pred CCCC-cceeeeCCCCcccccchhhhhccccccCCCcccccchhhhHHHhh
Q psy12066 78 PPCG-RRKIILSDEGKMYETVGTFGRKKNPTKGGKGAVGGIDLMGFLKAQ 126 (164)
Q Consensus 78 Pp~G-RrKIiLSdeGK~yGRNELIa~YI~~~tgGK~R~~~~~l~~~lK~~ 126 (164)
.|+| +|.+++-..|+.+|+-.. |.+ --.||+-+++.+|..||+.+
T Consensus 6 lp~GW~R~~~~R~~G~s~gk~Dv---yY~-sP~Gkk~RSk~ev~~yL~~~ 51 (69)
T 3vxv_A 6 VPCGWERVVKQRLSGKTAGKFDV---YFI-SPQGLKFRSKRSLANYLLKN 51 (69)
T ss_dssp SCTTCEEEEEECCSSTTTTCEEE---EEE-CTTSCEECSHHHHHHHHHHH
T ss_pred CCCCCEEEEEEeccCCCCCcceE---EEE-cCCCCEeeCHHHHHHHHHhC
Confidence 4677 777777667888887732 333 34588888888999999976
No 12
>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11
Probab=60.57 E-value=5 Score=27.34 Aligned_cols=22 Identities=14% Similarity=0.421 Sum_probs=18.6
Q ss_pred CCCCCCCChhHHHHHHHHHHhc
Q psy12066 56 ADAEGVWSPDIEQSFQEALAIY 77 (164)
Q Consensus 56 ~d~e~VWs~DIEqAF~EALaIy 77 (164)
....-+|++|+.+.|.+|+...
T Consensus 4 ~k~r~~WT~elH~~Fv~Av~~L 25 (64)
T 1irz_A 4 KKPRVLWTHELHNKFLAAVDHL 25 (64)
T ss_dssp CCSSCSSCHHHHHHHHHHHHHH
T ss_pred CCCCCcCCHHHHHHHHHHHHHh
Confidence 3456689999999999999865
No 13
>4a69_C Nuclear receptor corepressor 2; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens} PDB: 1xc5_A
Probab=48.60 E-value=15 Score=25.82 Aligned_cols=24 Identities=21% Similarity=0.468 Sum_probs=21.0
Q ss_pred CCCCCCChhHHHHHHHHHHhcCCC
Q psy12066 57 DAEGVWSPDIEQSFQEALAIYPPC 80 (164)
Q Consensus 57 d~e~VWs~DIEqAF~EALaIyPp~ 80 (164)
+.-+.|+++=...|.+||..||++
T Consensus 41 ~~~~~WT~eE~~~F~~~~~~~gK~ 64 (94)
T 4a69_C 41 QVMNMWSEQEKETFREKFMQHPKN 64 (94)
T ss_dssp HHTCCCCHHHHHHHHHHHHHSTTC
T ss_pred CCCCCCCHHHHHHHHHHHHHcCCC
Confidence 556889999999999999999764
No 14
>3l3u_A POL polyprotein; DNA integration, AIDS, integrase, endonuclease, polynucleotidyl transferase, DNA binding, viral protein; 1.40A {Human immunodeficiency virus 1} PDB: 3ao1_A 3l3v_A* 3ovn_A* 3ao2_A* 3ao3_A* 3ao4_A* 3ao5_A* 2itg_A 1biz_A 1biu_A 1b9d_A 4dmn_A* 2b4j_A 1itg_A 1b92_A 1bl3_A 1bi4_A 1bis_A 1b9f_A 1bi4_B ...
Probab=44.15 E-value=22 Score=24.16 Aligned_cols=35 Identities=14% Similarity=0.225 Sum_probs=26.0
Q ss_pred hhHHHHHHHHHHhcCCCCcceeeeCCCCcccccchhhhhc
Q psy12066 64 PDIEQSFQEALAIYPPCGRRKIILSDEGKMYETVGTFGRK 103 (164)
Q Consensus 64 ~DIEqAF~EALaIyPp~GRrKIiLSdeGK~yGRNELIa~Y 103 (164)
..+-.++.+++.-+|+ +++.||.|.-|- +..+.++
T Consensus 46 ~~~~~~l~~~~~~~~~----~~i~sD~G~~f~-s~~~~~~ 80 (163)
T 3l3u_A 46 QETAYFLLKLAGRWPV----KTVHTDNGSNFT-STTVKAA 80 (163)
T ss_dssp HHHHHHHHHHHHHSCC----CEEEECCCGGGG-SHHHHHH
T ss_pred HHHHHHHHHHHHHcCC----cEEeecChHhhh-hHHHHHH
Confidence 4677888888888875 789999999884 4444444
No 15
>3gt2_A Putative uncharacterized protein; P60 domain, antigen, unknown function; HET: EDO; 1.75A {Mycobacterium avium subsp}
Probab=32.80 E-value=21 Score=25.88 Aligned_cols=26 Identities=31% Similarity=0.590 Sum_probs=20.7
Q ss_pred cccceeecCcceeee-----ceEEEEeccCC
Q psy12066 138 PVGRAELRGGDVLWE-----GEVVMYLGKGR 163 (164)
Q Consensus 138 ~~~~~~~~~~~~~~~-----~~~~~~~~~~~ 163 (164)
.|-+.+++-||+++- +-|-||+|.|+
T Consensus 84 ~v~~~~~~pGDlvff~~~~~~HVgIy~G~g~ 114 (142)
T 3gt2_A 84 KILPQQARKGDLIFYGPEGTQSVAMYLGNNQ 114 (142)
T ss_dssp EECGGGCCTTCEEEESGGGCSEEEEEEETTE
T ss_pred eechhhCCCCCEEEeCCCCCCEEEEEecCCE
Confidence 445678999998865 48999999885
No 16
>1c6v_A Protein (SIV integrase); DNA integration, DNA binding protein; 3.00A {Simian immunodeficiency virus} SCOP: c.55.3.2
Probab=32.63 E-value=36 Score=22.55 Aligned_cols=29 Identities=10% Similarity=0.195 Sum_probs=22.2
Q ss_pred ChhHHHHHHHHHHhcCCCCcceeeeCCCCcccc
Q psy12066 63 SPDIEQSFQEALAIYPPCGRRKIILSDEGKMYE 95 (164)
Q Consensus 63 s~DIEqAF~EALaIyPp~GRrKIiLSdeGK~yG 95 (164)
+.++-.++.+++.-+|+ +++.||+|+-|-
T Consensus 45 ~~~~~~~~~~~~~~~~~----~~i~sDnG~~f~ 73 (164)
T 1c6v_A 45 GRQTALFLLKLAGRWPI----THLHTDNGANFA 73 (164)
T ss_dssp HHHHHHHHHHHHTTSCC----CEEECCCCSSTT
T ss_pred hHHHHHHHHHHHHhcCC----CEEEeCCchhhh
Confidence 35677777787777763 788999999884
No 17
>1cxq_A Avian sarcoma virus integrase; mixed beta-sheet surrounded by alpha-helices, transferase; HET: EPE; 1.02A {Avian sarcoma virus} SCOP: c.55.3.2 PDB: 1cxu_A* 1czb_A* 1cz9_A* 1asu_A* 1asw_A* 1asv_A 1a5v_A* 1a5w_A* 1a5x_A* 1vsf_A* 1vse_A* 3o4n_A* 1vsm_A 3o4q_A* 1vsd_A* 1vsh_A* 1vsi_A* 1vsj_A* 1vsk_A 1vsl_A
Probab=32.63 E-value=27 Score=23.95 Aligned_cols=29 Identities=24% Similarity=0.440 Sum_probs=22.8
Q ss_pred hhHHHHHHHHHHhcCCCCcceeeeCCCCcccc
Q psy12066 64 PDIEQSFQEALAIYPPCGRRKIILSDEGKMYE 95 (164)
Q Consensus 64 ~DIEqAF~EALaIyPp~GRrKIiLSdeGK~yG 95 (164)
..+.++|.++++.++ .-+++.||.|+-|-
T Consensus 52 ~~v~~~l~~~~~~~g---~p~~i~sDnG~~f~ 80 (162)
T 1cxq_A 52 VAAQHHWATAIAVLG---RPKAIKTDNGSCFT 80 (162)
T ss_dssp HHHHHHHHHHHHHHC---CCSEEECCSCHHHH
T ss_pred HHHHHHHHHHHHHHC---CCeEEEeCCchhhh
Confidence 567788999988774 34689999999883
No 18
>2k1g_A Lipoprotein SPR; solution structure, bacterial lipoprotein, cysteine PEPT NPLC/P60 family, construct optimized, membrane, palmitate; NMR {Escherichia coli}
Probab=30.80 E-value=26 Score=25.85 Aligned_cols=26 Identities=35% Similarity=0.779 Sum_probs=20.3
Q ss_pred cccceeecCccee-eec-----eEEEEeccCC
Q psy12066 138 PVGRAELRGGDVL-WEG-----EVVMYLGKGR 163 (164)
Q Consensus 138 ~~~~~~~~~~~~~-~~~-----~~~~~~~~~~ 163 (164)
+|.+.+|+-||++ |.+ -|-||+|.|+
T Consensus 62 ~V~~~~l~pGDLvFf~~~~~~~HVGIyiG~g~ 93 (135)
T 2k1g_A 62 SVSRSNLRTGDLVLFRAGSTGRHVGIYIGNNQ 93 (135)
T ss_dssp EECGGGCCTTEEEEEEETTTEEEEEEEEETTE
T ss_pred EecHHHccCCcEEEECCCCCCeEEEEEecCCE
Confidence 4567899999976 544 5899999885
No 19
>4e4j_A Arginine deiminase; L-arginine, L-citrulline, NH3, hydrolase; 2.30A {Mycoplasma penetrans}
Probab=30.72 E-value=28 Score=29.38 Aligned_cols=36 Identities=14% Similarity=0.407 Sum_probs=24.4
Q ss_pred hcccccccccccccceeecCcceeeeceEEEEeccC
Q psy12066 127 RYEGRELWEELPVGRAELRGGDVLWEGEVVMYLGKG 162 (164)
Q Consensus 127 r~e~~~~W~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (164)
++.+.+.|-...-..+-+.||||++-|+-+.|.|-|
T Consensus 220 ~~~~~~~~~~~~~~~~~lEGGDvl~l~~~~l~iG~s 255 (433)
T 4e4j_A 220 KYKNTPRYFDIVGNNGTIEGGDIFIYNSKTLVIGNS 255 (433)
T ss_dssp TTTTCCEEECSSSSCSCCCGGGEEECSSSEEEEEES
T ss_pred hhcCCceEEeccCCCceEecceEEEECCCEEEEEec
Confidence 444555555555556789999999988766666643
No 20
>3ne0_A Resuscitation promoting factor interacting protei; cell WALL, peptidoglycan, hydrolase; 1.00A {Mycobacterium tuberculosis} PDB: 3pbc_A 3s0q_A 2xiv_A*
Probab=30.20 E-value=23 Score=28.30 Aligned_cols=26 Identities=35% Similarity=0.782 Sum_probs=21.0
Q ss_pred cccceeecCcceeee-----ceEEEEeccCC
Q psy12066 138 PVGRAELRGGDVLWE-----GEVVMYLGKGR 163 (164)
Q Consensus 138 ~~~~~~~~~~~~~~~-----~~~~~~~~~~~ 163 (164)
.|-+.+++-||+++- +.|.||+|.|+
T Consensus 153 ~V~~~~lqpGDLvFf~~g~~~HVgIYlG~g~ 183 (214)
T 3ne0_A 153 KIPSSQMRRGDVIFYGPNGSQHVTIYLGNGQ 183 (214)
T ss_dssp EEEGGGCCTTCEEEESGGGCSEEEEEEETTE
T ss_pred eechhhCCCCCEEEecCCCCCEEEEEeCCCE
Confidence 355678999999875 58999999885
No 21
>3kks_A Integrase, IN; beta-strands flanked by alpha-helices, DNA binding protein; 2.20A {Bovine immunodeficiency virus} PDB: 3kkr_A
Probab=29.77 E-value=27 Score=22.95 Aligned_cols=37 Identities=11% Similarity=0.145 Sum_probs=26.8
Q ss_pred ChhHHHHHHHHHHhcCCCCcceeeeCCCCcccccchhhhhcc
Q psy12066 63 SPDIEQSFQEALAIYPPCGRRKIILSDEGKMYETVGTFGRKK 104 (164)
Q Consensus 63 s~DIEqAF~EALaIyPp~GRrKIiLSdeGK~yGRNELIa~YI 104 (164)
+.++-++|.+++..++ -+++.||.|+-|- ++.+..+.
T Consensus 38 ~~~~~~~l~~~~~~~g----p~~i~sDnG~~f~-s~~~~~~~ 74 (152)
T 3kks_A 38 ALQVALCILQLIQRYT----VLHLHSDNGPCFT-AHRIENLC 74 (152)
T ss_dssp HHHHHHHHHHHHHHSC----CSEEEECSCHHHH-SHHHHHHH
T ss_pred HHHHHHHHHHHHHHhC----CcEEecCCchHhh-HHHHHHHH
Confidence 4577888888888876 5788999999884 44444443
No 22
>2i3e_A G-rich; rich protein, CNP, 2',3'-cyclic-nucleotide 3'- phosphodiesterase, nerve regeneration, hydrolase; NMR {Carassius auratus}
Probab=27.71 E-value=25 Score=29.40 Aligned_cols=33 Identities=42% Similarity=0.858 Sum_probs=21.6
Q ss_pred cchhhhHHHhh--hcccccccccccccceeecCcceeeeceEEEEeccCCC
Q psy12066 116 GIDLMGFLKAQ--RYEGRELWEELPVGRAELRGGDVLWEGEVVMYLGKGRW 164 (164)
Q Consensus 116 ~~~l~~~lK~~--r~e~~~~W~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (164)
+++|+.+|+-+ .-+|... |+.+| -+-|+|+|||
T Consensus 168 GlDLleil~~e~~G~~Ge~V---------e~~~G-------~l~~~g~GrW 202 (222)
T 2i3e_A 168 GLDLLEILALQKEGKEGTQV---------EMDLG-------TLTYLSEGRW 202 (222)
T ss_dssp HHHHHHHHHHHHTTCCCEEE---------ECSSE-------EEEECSSCCE
T ss_pred chhHHHHHHHHhcCCCCceE---------EEcCc-------eEEEecCceE
Confidence 48999999865 3334322 33333 2789999998
No 23
>4b4y_A Neuroglobin; transport protein, nervous system evolution, globin evolutio cnidarian, metazoan; HET: HEM; 2.30A {Symsagittifera roscoffensis}
Probab=25.81 E-value=42 Score=23.84 Aligned_cols=18 Identities=22% Similarity=0.532 Sum_probs=15.5
Q ss_pred CCCChhHHHHHHHHHHhc
Q psy12066 60 GVWSPDIEQSFQEALAIY 77 (164)
Q Consensus 60 ~VWs~DIEqAF~EALaIy 77 (164)
+.|++++++|+.+++..+
T Consensus 131 ~~~t~e~~~AW~~~~~~v 148 (154)
T 4b4y_A 131 AKWSEEKKEAWLKAYGII 148 (154)
T ss_dssp TTCCHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHH
Confidence 569999999999998753
No 24
>2jyx_A Lipoprotein SPR; solution structure, construct optimized, membrane, palmitate, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli K12} PDB: 2k1g_A
Probab=23.36 E-value=41 Score=24.14 Aligned_cols=26 Identities=35% Similarity=0.670 Sum_probs=19.8
Q ss_pred cccceeecCcceeee-c-----eEEEEeccCC
Q psy12066 138 PVGRAELRGGDVLWE-G-----EVVMYLGKGR 163 (164)
Q Consensus 138 ~~~~~~~~~~~~~~~-~-----~~~~~~~~~~ 163 (164)
.|.+.+++-||+++- . -|-+|+|.|+
T Consensus 62 ~v~~~~l~pGDLvff~~~~~~~HVgIy~G~g~ 93 (136)
T 2jyx_A 62 SVSRSNLRTGDLVLFRAGSTGRHVGIYIGNNQ 93 (136)
T ss_dssp ECCTTTCCTTEEEEEECSSSSEEEEEEEETTE
T ss_pred EcchHhCCCCCEEEECCCCCCCEEEEEEcCCE
Confidence 345678999998763 2 7899999885
No 25
>1tu9_A Hypothetical protein PA3967; structural genomics, heme, hemoglobin, pseudomonas aeruginos PSI, protein structure initiative; HET: HEM; 1.20A {Pseudomonas aeruginosa} SCOP: a.1.1.2
Probab=23.33 E-value=43 Score=22.97 Aligned_cols=18 Identities=0% Similarity=0.099 Sum_probs=15.4
Q ss_pred CCCChhHHHHHHHHHHhc
Q psy12066 60 GVWSPDIEQSFQEALAIY 77 (164)
Q Consensus 60 ~VWs~DIEqAF~EALaIy 77 (164)
.-|++++++|..+++..+
T Consensus 107 ~~~t~e~~~AW~~~~~~~ 124 (134)
T 1tu9_A 107 RDCDAETRDAWRDVMGRG 124 (134)
T ss_dssp TTCCHHHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHH
Confidence 369999999999998754
No 26
>1bin_A Leghemoglobin A; heme, nitrogen fixation, multigene family, oxygen transport; HET: HEM; 2.20A {Glycine max} SCOP: a.1.1.2 PDB: 1fsl_A*
Probab=23.27 E-value=44 Score=22.71 Aligned_cols=17 Identities=18% Similarity=0.493 Sum_probs=14.7
Q ss_pred CCChhHHHHHHHHHHhc
Q psy12066 61 VWSPDIEQSFQEALAIY 77 (164)
Q Consensus 61 VWs~DIEqAF~EALaIy 77 (164)
-|++++++|+.+++..+
T Consensus 120 ~~t~e~~~AW~~~~~~i 136 (143)
T 1bin_A 120 KWSDELSRAWEVAYDEL 136 (143)
T ss_dssp GCCHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHH
Confidence 59999999999998753
No 27
>3ubc_A Hemoglobin-like flavoprotein; oxygen-bound, autoxidation, nanotemplate, langmuir-blodgett, films, oxygen transport; HET: HEM; 1.65A {Methylacidiphilum infernorum V4} PDB: 3ubv_A* 3s1i_A* 3s1j_A*
Probab=23.10 E-value=43 Score=22.80 Aligned_cols=17 Identities=6% Similarity=0.247 Sum_probs=14.5
Q ss_pred CCChhHHHHHHHHHHhc
Q psy12066 61 VWSPDIEQSFQEALAIY 77 (164)
Q Consensus 61 VWs~DIEqAF~EALaIy 77 (164)
-|++++++|+.+++..+
T Consensus 109 ~~t~e~~~AW~~~~~~v 125 (131)
T 3ubc_A 109 GFTEEAKAAWTKVYGIA 125 (131)
T ss_dssp GSCHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHH
Confidence 39999999999998753
No 28
>1ssz_A Pulmonary surfactant-associated protein B; LUNG surfactant protein, saposin, surface active protein; NMR {Synthetic}
Probab=23.01 E-value=27 Score=21.70 Aligned_cols=12 Identities=33% Similarity=0.468 Sum_probs=8.9
Q ss_pred HHHHhcCCCCcc
Q psy12066 72 EALAIYPPCGRR 83 (164)
Q Consensus 72 EALaIyPp~GRr 83 (164)
..-+.||+|||-
T Consensus 10 riqa~ipk~grm 21 (34)
T 1ssz_A 10 RIQAMIPKGGRM 21 (34)
T ss_dssp HHHHHCSSSCCC
T ss_pred HHHHHccccchh
Confidence 345789999983
No 29
>3pbi_A Invasion protein; peptidoglycan hydrolase, extracellular, invasion related Pro cell WALL, NLPC-like module, hydrolase; 1.60A {Mycobacterium tuberculosis} PDB: 3i86_A
Probab=22.13 E-value=47 Score=26.40 Aligned_cols=25 Identities=40% Similarity=0.761 Sum_probs=20.2
Q ss_pred ccceeecCcceeee-----ceEEEEeccCC
Q psy12066 139 VGRAELRGGDVLWE-----GEVVMYLGKGR 163 (164)
Q Consensus 139 ~~~~~~~~~~~~~~-----~~~~~~~~~~~ 163 (164)
|-..+++-||+++- ..|-||+|.|+
T Consensus 154 V~~~~lqpGDLVff~~g~~~HVgIYlG~g~ 183 (214)
T 3pbi_A 154 VPPAEAKRGDLIFYGPGGGQHVTLYLGNGQ 183 (214)
T ss_dssp ECGGGCCTTCEEEESGGGCSEEEEEEETTE
T ss_pred echhhCCCCCEEEecCCCCCEEEEEecCCE
Confidence 45678999998864 58999999885
No 30
>2ci1_A NG, NG-dimethylarginine dimethylaminohydrolase 1; NOS regulation, S-nitrosylation, zinc, MMA, ADMA, acetylation, metal-binding; HET: KOR K1R CIT; 1.08A {Bos taurus} PDB: 2c6z_A* 2ci3_A 2ci4_A 2ci5_A* 2ci6_A 2ci7_A 2jaj_A* 2jai_A*
Probab=21.70 E-value=37 Score=26.41 Aligned_cols=41 Identities=27% Similarity=0.414 Sum_probs=25.1
Q ss_pred chhhhHHHhhhcccccccccccccceeecCcceeeeceEEEEeccC
Q psy12066 117 IDLMGFLKAQRYEGRELWEELPVGRAELRGGDVLWEGEVVMYLGKG 162 (164)
Q Consensus 117 ~~l~~~lK~~r~e~~~~W~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (164)
..+..+++... -+.|. .+-...-+.||||++.|+ .++.|.+
T Consensus 96 ~~~~~~~~~~g---~~~~~-~~~~~~~lEGGdv~~~g~-~~~vg~s 136 (275)
T 2ci1_A 96 DMMKEALEKLQ---LNIVE-MKDENATLDGGDVLFTGR-EFFVGLS 136 (275)
T ss_dssp HHHHHHHHHTT---CEEEE-CCCTTCCCCGGGEEECSS-EEEEEES
T ss_pred HHHHHHHHHcC---CCEEE-ecCCCceEccccEEEECC-EEEEEec
Confidence 44555666432 23343 122235699999999999 6777765
No 31
>1ub1_A MECP2, attachment region binding protein; chicken methyl-CPG-binding protein 2 (cmecp2), MAR-binding protein (ARBP), spectroscopy; NMR {Gallus gallus} SCOP: d.10.1.3
Probab=21.68 E-value=43 Score=25.74 Aligned_cols=44 Identities=18% Similarity=0.296 Sum_probs=31.1
Q ss_pred CCC-cceeeeCCCCcccccchhhhhccccccCCCcccccchhhhHHHhh
Q psy12066 79 PCG-RRKIILSDEGKMYETVGTFGRKKNPTKGGKGAVGGIDLMGFLKAQ 126 (164)
Q Consensus 79 p~G-RrKIiLSdeGK~yGRNELIa~YI~~~tgGK~R~~~~~l~~~lK~~ 126 (164)
|+| .|.+++-..|+.+|+.+. |.+ --+||.-+++.+|..||+.+
T Consensus 39 P~GWkRe~~~RksG~Sagk~DV---YY~-SP~GKkfRSk~Ev~ryL~~~ 83 (133)
T 1ub1_A 39 PEGWTRKLKQRKSGRSAGKYDV---YLI-NPQGKAFRSKVELIAYFEKV 83 (133)
T ss_dssp TTBCEEEEEECCCSSSCCSEEE---EEE-CTTSCEESSHHHHHHHHTTS
T ss_pred CCCCEEEEEEecCCCCCCceeE---EEE-CCCCCeeeCHHHHHHHHHHC
Confidence 344 566667667888887443 333 34588888889999999876
No 32
>2r80_A Hemoglobin subunit alpha-A; oxygen tranport/storage, heme, iron, metal-binding, oxygen transport, transport, oxygen binding; HET: HEM; 1.44A {Columba livia} PDB: 3mju_A* 3dhr_A* 3mjp_A* 1faw_A* 3eok_A* 3k8b_A* 2qmb_A* 3fs4_A* 3a59_A* 1a4f_A* 1hv4_A* 2zfb_A* 1c40_A* 3at5_A* 3at6_A*
Probab=21.55 E-value=48 Score=23.30 Aligned_cols=18 Identities=11% Similarity=0.359 Sum_probs=15.4
Q ss_pred CCCChhHHHHHHHHHHhc
Q psy12066 60 GVWSPDIEQSFQEALAIY 77 (164)
Q Consensus 60 ~VWs~DIEqAF~EALaIy 77 (164)
+-|++++++|+.+++..+
T Consensus 115 ~~~t~e~~~AW~~~~~~v 132 (141)
T 2r80_A 115 SLLTPEVHASLDKFVLAV 132 (141)
T ss_dssp TTCCHHHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHH
Confidence 359999999999999764
No 33
>1cg5_B Protein (hemoglobin); oxygen transport; HET: HEM; 1.60A {Dasyatis akajei} SCOP: a.1.1.2 PDB: 1cg8_B*
Probab=20.77 E-value=51 Score=23.56 Aligned_cols=17 Identities=6% Similarity=0.161 Sum_probs=14.9
Q ss_pred CCChhHHHHHHHHHHhc
Q psy12066 61 VWSPDIEQSFQEALAIY 77 (164)
Q Consensus 61 VWs~DIEqAF~EALaIy 77 (164)
-|+|++++|+.+++..+
T Consensus 116 ~~t~e~~~AW~k~~~~v 132 (141)
T 1cg5_B 116 TFRPKEHAAAYKFFRLV 132 (141)
T ss_dssp GCCHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHH
Confidence 49999999999998764
No 34
>2hbw_A NLP/P60 protein; NLP/P60 family protein, structural genomics, joint center FO structural genomics, JCSG, protein structure initiative; HET: UNL; 1.05A {Anabaena variabilis} PDB: 2evr_A 2fg0_A
Probab=20.65 E-value=52 Score=26.18 Aligned_cols=25 Identities=36% Similarity=0.598 Sum_probs=19.9
Q ss_pred ccceeecCcceeee------ceEEEEeccCC
Q psy12066 139 VGRAELRGGDVLWE------GEVVMYLGKGR 163 (164)
Q Consensus 139 ~~~~~~~~~~~~~~------~~~~~~~~~~~ 163 (164)
|...+|+-||+++- +-|-||+|.|+
T Consensus 156 v~~~~l~pGDLvff~~~~~~~HVgIy~G~g~ 186 (235)
T 2hbw_A 156 ITIDELAPGDLVFFGTPVKATHVGLYLGDGC 186 (235)
T ss_dssp ECGGGCCTTCEEEEECSSCEEEEEEEEETTE
T ss_pred ccHhhCCCCCEEEECCCCCCCEEEEEeCCCE
Confidence 44578999998754 68999999885
Done!