RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy12066
         (164 letters)



>2hzd_A Transcriptional enhancer factor TEF-1; DNA-binding,
          helix-turn-helix, gene regulation; NMR {Homo sapiens}
          Length = 82

 Score = 62.7 bits (152), Expect = 5e-14
 Identities = 37/39 (94%), Positives = 38/39 (97%)

Query: 57 DAEGVWSPDIEQSFQEALAIYPPCGRRKIILSDEGKMYE 95
          DAEGVWSPDIEQSFQEAL+IYPPCGRRKIILSDEGKMY 
Sbjct: 4  DAEGVWSPDIEQSFQEALSIYPPCGRRKIILSDEGKMYG 42


>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
           programmed cell death; HET: DTP; 6.90A {Drosophila
           melanogaster} PDB: 3iz8_A*
          Length = 1221

 Score = 31.7 bits (71), Expect = 0.090
 Identities = 23/140 (16%), Positives = 36/140 (25%), Gaps = 64/140 (45%)

Query: 39  KHALDVGDLDDDKDLAAADAEGVWSPDIEQSFQEALAIYPPCGRRKIILSDEGKMYETVG 98
           ++ L V  L +           V +     +F         C   KI+L        T  
Sbjct: 244 ENCLLV--LLN-----------VQNAKAWNAFN------LSC---KILL--------T-- 271

Query: 99  TFGRKKNPTKGGKGAVGGI-----DLMGFLKAQRYEGREL---W-----EELP------- 138
           T  R K  T     A           M        E + L   +     ++LP       
Sbjct: 272 T--RFKQVTDFLSAATTTHISLDHHSMTLTPD---EVKSLLLKYLDCRPQDLPREVLTTN 326

Query: 139 ------VGRAELRGGDVLWE 152
                 +    +R G   W+
Sbjct: 327 PRRLSIIA-ESIRDGLATWD 345


>2bwr_A Psathyrella velutina lectin; N-acetyl-glucosamine; HET: MES; 1.5A
           {Psathyrella velutina} PDB: 2bwm_A* 2c25_A* 2c4d_A*
          Length = 401

 Score = 26.8 bits (59), Expect = 3.5
 Identities = 13/47 (27%), Positives = 17/47 (36%), Gaps = 2/47 (4%)

Query: 18  WTPGSAAVPPGADTNGSGGDSKHALDVGDLDDDK--DLAAADAEGVW 62
           + P  A V       G    S H   V DL  D+  D+      GV+
Sbjct: 205 FQPAQAVVNNFCIGAGGWTISAHPRVVADLTGDRKADILGFGVAGVY 251


>4eef_G F-HB80.4, designed hemagglutinin binding protein; immunoglobulin,
          fusion of virus membrane with membrane, membrane
          fusion, sialic acid, virion; HET: NAG BMA; 2.70A
          {Artificial gene}
          Length = 74

 Score = 24.4 bits (53), Expect = 7.0
 Identities = 4/25 (16%), Positives = 9/25 (36%)

Query: 54 AAADAEGVWSPDIEQSFQEALAIYP 78
          +   +   W      +F+ AL+   
Sbjct: 15 STRGSGRPWKFSENIAFEIALSFTN 39


>4a7k_A Aldos-2-ulose dehydratase; lyase, dehydratase/isomerase, lignin
           degradation, cortalcerone/microthecin forming,
           metalloenzyme; 2.00A {Phanerochaete chrysosporium} PDB:
           4a7y_A* 4a7z_A*
          Length = 900

 Score = 25.7 bits (55), Expect = 8.4
 Identities = 16/84 (19%), Positives = 25/84 (29%), Gaps = 8/84 (9%)

Query: 3   YFPGFGLVTGTISSPWTPGSAAVPPGADTNGSGGDSKHALDVGDLDDD--KDLAAADAEG 60
           Y    G  TG + + WT     +      NG    S H +   D+D D   +        
Sbjct: 302 YTKPAGSPTGIVRAEWT--RHVLDVFGPLNGKHTGSIHQVVCADIDGDGEDEFLV----A 355

Query: 61  VWSPDIEQSFQEALAIYPPCGRRK 84
           +   D     +  +  Y    R  
Sbjct: 356 MMGADPPDFQRTGVWCYKLVDRTN 379


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.315    0.139    0.437 

Gapped
Lambda     K      H
   0.267   0.0610    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,808,572
Number of extensions: 172950
Number of successful extensions: 308
Number of sequences better than 10.0: 1
Number of HSP's gapped: 305
Number of HSP's successfully gapped: 27
Length of query: 164
Length of database: 6,701,793
Length adjustment: 86
Effective length of query: 78
Effective length of database: 4,300,587
Effective search space: 335445786
Effective search space used: 335445786
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 53 (24.4 bits)