RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy12066
         (164 letters)



>d1pe9a_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type A
          [TaxId: 556]}
          Length = 361

 Score = 27.4 bits (60), Expect = 0.95
 Identities = 12/48 (25%), Positives = 20/48 (41%), Gaps = 1/48 (2%)

Query: 12 GTISSPWTPGSAAVPPGADTNGSGGDSKHALDVGDLDDDKDLAAADAE 59
            + S  T G A+   G  T G+   S +   V ++ +     +A AE
Sbjct: 7  KALESAPTVGWASQN-GFTTGGAAATSDNIYIVTNISEFTSALSAGAE 53


>d1iioa_ a.39.4.1 (A:) Hypothetical protein MTH865 {Archaeon
          Methanobacterium thermoautotrophicum [TaxId: 145262]}
          Length = 84

 Score = 24.8 bits (54), Expect = 2.3
 Identities = 15/40 (37%), Positives = 18/40 (45%), Gaps = 1/40 (2%)

Query: 23 AAVPPGADTNGSGGDSK-HALDVGDLDDDKDLAAADAEGV 61
          AA+P G DT    GD +  A D G +    D     AE V
Sbjct: 35 AALPNGPDTTCKSGDVELKASDAGQVLTADDFPFKSAEEV 74


>d2cqqa1 a.4.1.3 (A:8-66) DnaJ homolog subfamily C member 1 {Human
          (Homo sapiens) [TaxId: 9606]}
          Length = 59

 Score = 24.0 bits (52), Expect = 2.8
 Identities = 2/18 (11%), Positives = 7/18 (38%)

Query: 62 WSPDIEQSFQEALAIYPP 79
          W+ +       ++  +P 
Sbjct: 4  WTEEDLSQLTRSMVKFPG 21


>d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III,
           N-domain {Escherichia coli [TaxId: 562]}
          Length = 239

 Score = 25.1 bits (54), Expect = 4.7
 Identities = 13/54 (24%), Positives = 23/54 (42%), Gaps = 3/54 (5%)

Query: 37  DSKHALDVGDLDDDKDLAAADAEGVWSPDIEQSFQEALAIYPPCGRRKIILSDE 90
           D+   ++ G   D  ++ AA    V   +  +   + +   P  GR K+ L DE
Sbjct: 73  DNCREIEQGRFVDLIEIDAASRTKV---EDTRDLLDNVQYAPARGRFKVYLIDE 123


>d1o8ba1 c.124.1.4 (A:23-126,A:199-218) D-ribose-5-phosphate
           isomerase (RpiA), catalytic domain {Escherichia coli
           [TaxId: 562]}
          Length = 124

 Score = 24.1 bits (52), Expect = 7.2
 Identities = 4/22 (18%), Positives = 9/22 (40%)

Query: 80  CGRRKIILSDEGKMYETVGTFG 101
              + I ++D  K  + +   G
Sbjct: 87  VAEKFICIADASKQVDILANRG 108


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.315    0.139    0.437 

Gapped
Lambda     K      H
   0.267   0.0497    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 673,334
Number of extensions: 31039
Number of successful extensions: 61
Number of sequences better than 10.0: 1
Number of HSP's gapped: 61
Number of HSP's successfully gapped: 7
Length of query: 164
Length of database: 2,407,596
Length adjustment: 79
Effective length of query: 85
Effective length of database: 1,322,926
Effective search space: 112448710
Effective search space used: 112448710
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 49 (23.2 bits)